sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-2H-A9GF-01 10 100992245 100992245 G T HPSE2 Missense_Mutation p.T103N 0.31 deleterious(0) benign(0.157) TCGA-2H-A9GF-01 10 103315119 103315119 A G BTRC 3'UTR 0.39 TCGA-2H-A9GF-01 10 106976760 106976760 T C SORCS3 Missense_Mutation p.F872L 0.29 tolerated(1) benign(0.006) TCGA-2H-A9GF-01 10 118187517 118187517 C A PNLIPRP3 5'UTR 0.34 TCGA-2H-A9GF-01 10 135373623 135373623 C A SYCE1 Missense_Mutation p.L36F 0.27 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GF-01 10 27459837 27459837 G C MASTL Missense_Mutation p.R650T 0.20 tolerated(0.07) benign(0.009) TCGA-2H-A9GF-01 10 50530731 50530731 C T C10orf71 Silent p.S47S 0.33 TCGA-2H-A9GF-01 10 75867026 75867026 C T VCL Silent p.L825L 0.25 TCGA-2H-A9GF-01 10 76990958 76990958 C A VDAC2 3'UTR 0.22 TCGA-2H-A9GF-01 10 76990976 76990976 G A VDAC2 3'UTR 0.28 TCGA-2H-A9GF-01 10 88810989 88810989 G C GLUD1 3'UTR 0.43 TCGA-2H-A9GF-01 10 89419750 89419750 C T PAPSS2 Silent p.I4I 0.40 TCGA-2H-A9GF-01 11 100996845 100996845 G T PGR Nonsense_Mutation p.S561* 0.54 TCGA-2H-A9GF-01 11 106558447 106558447 G A GUCY1A2 Missense_Mutation p.P707L 0.18 deleterious(0) probably_damaging(0.987) TCGA-2H-A9GF-01 11 1085959 1085959 C T MUC2 Silent p.D933D 0.37 TCGA-2H-A9GF-01 11 111851550 111851550 G A DIXDC1 Missense_Mutation p.A249T 0.27 tolerated(0.51) benign(0.001) TCGA-2H-A9GF-01 11 116631632 116631632 G A BUD13 Missense_Mutation p.S358F 0.25 deleterious(0.03) possibly_damaging(0.497) TCGA-2H-A9GF-01 11 117651360 117651360 G A DSCAML1 Missense_Mutation p.P131L 0.21 deleterious(0) probably_damaging(1) TCGA-2H-A9GF-01 11 134253580 134253580 G A B3GAT1 Silent p.F205F 0.32 TCGA-2H-A9GF-01 11 17741321 17741321 C T MYOD1 5'UTR 0.24 TCGA-2H-A9GF-01 11 22400806 22400806 A T SLC17A6 3'UTR 0.17 TCGA-2H-A9GF-01 11 45246527 45246527 C T PRDM11 3'UTR 0.56 TCGA-2H-A9GF-01 11 49831435 49831435 A C RP11-707M1.1 RNA 0.19 TCGA-2H-A9GF-01 11 55541046 55541046 T G OR5D13 Missense_Mutation p.L45V 0.62 tolerated(0.06) benign(0.144) TCGA-2H-A9GF-01 11 55606456 55606456 T G OR5D16 Missense_Mutation p.S77A 0.54 deleterious(0.01) possibly_damaging(0.606) TCGA-2H-A9GF-01 11 55681968 55681968 A G OR5W2 Missense_Mutation p.F31L 0.58 deleterious(0.05) benign(0.142) TCGA-2H-A9GF-01 11 55999758 55999758 T G OR5T2 Missense_Mutation p.S302R 0.27 deleterious(0.01) possibly_damaging(0.548) TCGA-2H-A9GF-01 11 6048564 6048564 A C OR56A1 Missense_Mutation p.V124G 0.28 deleterious(0) benign(0.002) TCGA-2H-A9GF-01 11 62284501 62284501 C T AHNAK Silent p.T5796T 0.28 TCGA-2H-A9GF-01 11 62299944 62299944 G A AHNAK Missense_Mutation p.H649Y 0.28 possibly_damaging(0.491) TCGA-2H-A9GF-01 11 63670599 63670599 G A MARK2 Missense_Mutation p.G495S 0.20 tolerated(0.41) benign(0.148) TCGA-2H-A9GF-01 11 6478611 6478611 G A TRIM3 Missense_Mutation p.A204V 0.50 tolerated(0.05) benign(0.124) TCGA-2H-A9GF-01 11 6578477 6578477 C T DNHD1 Missense_Mutation p.A2651V 0.41 probably_damaging(0.998) TCGA-2H-A9GF-01 11 6632681 6632681 G A TAF10 Silent p.I130I 0.59 TCGA-2H-A9GF-01 11 67232038 67232038 C T TMEM134 3'UTR 0.51 TCGA-2H-A9GF-01 11 82935967 82935967 G A ANKRD42 Silent p.T191T 0.17 TCGA-2H-A9GF-01 11 83641482 83641482 T C DLG2 Missense_Mutation p.K462R 0.52 tolerated(0.38) probably_damaging(0.979) TCGA-2H-A9GF-01 12 100566933 100566933 G C RP11-175P13.3 3'Flank 0.78 TCGA-2H-A9GF-01 12 101779775 101779775 G A UTP20 Silent p.K2744K 0.39 TCGA-2H-A9GF-01 12 104131498 104131498 T C STAB2 Silent p.C1879C 0.16 TCGA-2H-A9GF-01 12 108686358 108686358 A C CMKLR1 Missense_Mutation p.F128V 0.24 deleterious(0) possibly_damaging(0.864) TCGA-2H-A9GF-01 12 109959339 109959339 G C UBE3B Missense_Mutation p.G783R 0.08 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 12 111776207 111776207 G A CUX2 Missense_Mutation p.R1105H 0.13 deleterious(0) probably_damaging(0.983) TCGA-2H-A9GF-01 12 114793830 114793830 C A TBX5 Missense_Mutation p.R355L 0.39 tolerated(0.06) possibly_damaging(0.821) TCGA-2H-A9GF-01 12 120222019 120222019 A C CIT Intron 0.43 TCGA-2H-A9GF-01 12 123463398 123463398 C T OGFOD2 Silent p.G150G 0.33 TCGA-2H-A9GF-01 12 124104544 124104546 CTT - DDX55 In_Frame_Del p.L555del 0.21 TCGA-2H-A9GF-01 12 130884319 130884319 A C RIMBP2 Missense_Mutation p.F1013V 0.23 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GF-01 12 15067707 15067707 G A ERP27 Missense_Mutation p.R262C 0.48 tolerated(0.05) benign(0.28) TCGA-2H-A9GF-01 12 27916116 27916116 T C MANSC4 Missense_Mutation p.K193R 0.65 tolerated(0.48) benign(0.009) TCGA-2H-A9GF-01 12 40646757 40646757 T G LRRK2 Silent p.S409S 0.16 TCGA-2H-A9GF-01 12 45269600 45269600 G T NELL2 Missense_Mutation p.A68E 0.54 tolerated(0.06) benign(0.036) TCGA-2H-A9GF-01 12 4919747 4919747 C T KCNA6 Silent p.S180S 0.54 TCGA-2H-A9GF-01 12 53346032 53346033 - C KRT18 Frame_Shift_Ins p.Q361Pfs*4 0.37 TCGA-2H-A9GF-01 12 58159087 58159087 T G CYP27B1 Silent p.G194G 0.27 TCGA-2H-A9GF-01 12 66696520 66696520 A T HELB Missense_Mutation p.E46V 0.19 deleterious(0) probably_damaging(1) TCGA-2H-A9GF-01 12 6787531 6787531 C T ZNF384 Missense_Mutation p.A150T 0.69 tolerated(0.12) benign(0.145) TCGA-2H-A9GF-01 12 6858118 6858118 C T MLF2 Missense_Mutation p.R197Q 0.32 tolerated(1) benign(0.007) TCGA-2H-A9GF-01 12 6926358 6926358 C T CD4 Silent p.L340L 0.40 TCGA-2H-A9GF-01 12 9303324 9303324 T G PZP Missense_Mutation p.S1434R 0.56 tolerated(0.05) possibly_damaging(0.736) TCGA-2H-A9GF-01 13 100861648 100861648 G A PCCA Silent p.K177K 0.42 TCGA-2H-A9GF-01 13 41130697 41130697 A G FOXO1 3'UTR 0.08 TCGA-2H-A9GF-01 13 66879019 66879019 A C PCDH9 Missense_Mutation p.F1161C 0.32 deleterious(0) possibly_damaging(0.846) TCGA-2H-A9GF-01 13 72012529 72012529 C G DACH1 3'UTR 0.57 TCGA-2H-A9GF-01 14 101349575 101349575 G A RTL1 Silent p.D517D 0.17 TCGA-2H-A9GF-01 14 102467317 102467317 G A DYNC1H1 Silent p.L1367L 0.28 TCGA-2H-A9GF-01 14 22675947 22675947 G A TRAV34 Missense_Mutation p.E87K 0.22 tolerated(0.12) benign(0.058) TCGA-2H-A9GF-01 14 26917799 26917799 A C NOVA1 Missense_Mutation p.V297G 0.21 deleterious(0.03) unknown(0) TCGA-2H-A9GF-01 14 30100001 30100001 A C PRKD1 Missense_Mutation p.L540R 0.14 deleterious(0) probably_damaging(0.995) TCGA-2H-A9GF-01 14 42357119 42357119 G C LRFN5 Missense_Mutation p.A431P 0.19 deleterious(0.02) possibly_damaging(0.853) TCGA-2H-A9GF-01 14 45431554 45431554 A G FAM179B 5'UTR 0.21 TCGA-2H-A9GF-01 14 50941819 50941819 T G MAP4K5 Missense_Mutation p.K173T 0.18 deleterious(0.01) possibly_damaging(0.729) TCGA-2H-A9GF-01 14 72055443 72055443 G C SIPA1L1 Missense_Mutation p.R285P 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-2H-A9GF-01 14 76525022 76525022 G A IFT43 Intron 0.13 TCGA-2H-A9GF-01 14 86091697 86091697 A G FLRT2 3'UTR 0.16 TCGA-2H-A9GF-01 14 88792873 88792873 C T KCNK10 5'Flank 0.36 TCGA-2H-A9GF-01 15 23812089 23812089 T G MKRN3 Missense_Mutation p.L387R 0.27 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GF-01 15 24921692 24921692 G C NPAP1 Missense_Mutation p.Q226H 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-2H-A9GF-01 15 25223032 25223032 C A SNRPN Silent p.P176P 0.21 TCGA-2H-A9GF-01 15 26789890 26789890 C T GABRB3 3'UTR 0.45 TCGA-2H-A9GF-01 15 28493812 28493812 C G HERC2 Missense_Mutation p.E1041Q 0.15 benign(0.109) TCGA-2H-A9GF-01 15 44828926 44828926 G T EIF3J 5'Flank 0.70 TCGA-2H-A9GF-01 15 48054432 48054432 T G SEMA6D Missense_Mutation p.L192V 0.66 deleterious(0.02) benign(0.309) TCGA-2H-A9GF-01 15 54685372 54685372 C A UNC13C Missense_Mutation p.L1614M 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.73) TCGA-2H-A9GF-01 15 64977918 64977918 C T ZNF609 3'UTR 0.37 TCGA-2H-A9GF-01 15 83349264 83349264 C T AP3B2 Missense_Mutation p.V339I 0.42 tolerated(1) benign(0.008) TCGA-2H-A9GF-01 15 84245418 84245418 C T SH3GL3 Silent p.V183V 0.41 TCGA-2H-A9GF-01 15 89174176 89174176 G A AEN 3'UTR 0.58 TCGA-2H-A9GF-01 15 90208853 90208853 C G PLIN1 Silent p.L510L 0.69 TCGA-2H-A9GF-01 16 11000762 11000762 C T CIITA Silent p.S471S 0.30 TCGA-2H-A9GF-01 16 20371903 20371903 T C PDILT Missense_Mutation p.E498G 0.12 deleterious(0) possibly_damaging(0.906) TCGA-2H-A9GF-01 16 2813939 2813939 G A SRRM2 Missense_Mutation p.R1137K 0.21 unknown(0) TCGA-2H-A9GF-01 16 30731618 30731618 C T SRCAP Missense_Mutation p.P985S 0.17 unknown(0) TCGA-2H-A9GF-01 16 4747105 4747105 C T ANKS3 Missense_Mutation p.G632E 0.29 deleterious_low_confidence(0.02) benign(0.194) TCGA-2H-A9GF-01 16 53272290 53272290 G A CHD9 Missense_Mutation p.G890D 0.25 probably_damaging(0.991) TCGA-2H-A9GF-01 16 67866432 67866432 G A CENPT Missense_Mutation p.L43F 0.49 tolerated(0.21) benign(0.008) TCGA-2H-A9GF-01 16 68014007 68014007 G A DPEP3 Missense_Mutation p.L118F 0.28 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GF-01 16 71790060 71790060 C G AP1G1 Missense_Mutation p.R367P 0.21 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GF-01 16 78005824 78005824 T A VAT1L Silent p.T385T 0.22 TCGA-2H-A9GF-01 16 81293400 81293401 AT - BCMO1 Frame_Shift_Del p.S107Qfs*52 0.18 TCGA-2H-A9GF-01 16 83250962 83250962 G A CDH13 Missense_Mutation p.D213N 0.52 deleterious(0.04) benign(0.251) TCGA-2H-A9GF-01 16 87445479 87445479 G A ZCCHC14 Missense_Mutation p.P813S 0.22 deleterious(0.01) unknown(0) TCGA-2H-A9GF-01 16 88503805 88503805 C A ZNF469 Silent p.P3281P 0.33 TCGA-2H-A9GF-01 16 88876151 88876151 C T APRT Silent p.E166E 0.23 TCGA-2H-A9GF-01 16 89347639 89347639 G T ANKRD11 Missense_Mutation p.L1771I 0.25 benign(0.008) TCGA-2H-A9GF-01 17 10204947 10204947 G T MYH13 Missense_Mutation p.A1914E 0.69 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 17 10398269 10398269 C A MYH1 Missense_Mutation p.Q1815H 0.31 deleterious(0.04) benign(0.05) TCGA-2H-A9GF-01 17 10609815 10609815 G A ADPRM Nonsense_Mutation p.W221* 0.69 TCGA-2H-A9GF-01 17 21320009 21320009 G A KCNJ12 3'UTR 0.16 TCGA-2H-A9GF-01 17 27959030 27959030 T G SSH2 Missense_Mutation p.E1034A 0.46 deleterious_low_confidence(0.03) benign(0.003) TCGA-2H-A9GF-01 17 31091907 31091907 C T MYO1D Missense_Mutation p.A342T 0.33 deleterious(0) probably_damaging(0.992) TCGA-2H-A9GF-01 17 31618627 31618627 C T ASIC2 Silent p.P169P 0.23 TCGA-2H-A9GF-01 17 31619013 31619013 C T ASIC2 Missense_Mutation p.G41S 0.28 tolerated_low_confidence(0.79) unknown(0) TCGA-2H-A9GF-01 17 35300239 35300239 C T LHX1 Silent p.T344T 0.31 TCGA-2H-A9GF-01 17 36288208 36288208 G A TBC1D3F Silent p.A98A 0.14 TCGA-2H-A9GF-01 17 36667351 36667351 G A ARHGAP23 3'UTR 0.49 TCGA-2H-A9GF-01 17 38992522 38992523 TT - TMEM99 3'UTR 0.13 TCGA-2H-A9GF-01 17 41276051 41276051 G A BRCA1 Silent p.I21I 0.16 TCGA-2H-A9GF-01 17 41376426 41376426 C T TMEM106A 3'Flank 0.05 TCGA-2H-A9GF-01 17 42829294 42829294 G A DBF4B 3'UTR 0.20 TCGA-2H-A9GF-01 17 53016302 53016302 T G TOM1L1 Missense_Mutation p.S351A 0.21 tolerated(0.28) benign(0.001) TCGA-2H-A9GF-01 17 59533902 59533902 G A TBX4 Silent p.P17P 0.38 TCGA-2H-A9GF-01 17 68173739 68173740 - TCTGA KCNJ2 3'UTR 0.28 TCGA-2H-A9GF-01 17 6899505 6899505 G A ALOX12 Silent p.Q23Q 0.46 TCGA-2H-A9GF-01 17 72923757 72923757 C A OTOP2 Intron 0.26 TCGA-2H-A9GF-01 17 74625767 74625767 T A ST6GALNAC1 Missense_Mutation p.E53V 0.24 benign(0.002) TCGA-2H-A9GF-01 17 7578384 7578401 GCAGCGCTCATGGTGGGG - TP53 In_Frame_Del p.P177_C182del 0.50 TCGA-2H-A9GF-01 17 76212769 76212769 C G BIRC5 Silent p.S105S 0.15 TCGA-2H-A9GF-01 17 79207238 79207238 G A ENTHD2 Missense_Mutation p.R174C 0.29 tolerated(0.09) benign(0.001) TCGA-2H-A9GF-01 17 9808302 9808302 C T RCVRN Missense_Mutation p.A66T 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GF-01 18 12356720 12356720 C T AFG3L2 Silent p.E379E 0.43 TCGA-2H-A9GF-01 18 347218 347218 G A COLEC12 Missense_Mutation p.T135M 0.26 tolerated(0.24) benign(0.037) TCGA-2H-A9GF-01 18 5445237 5445237 A G EPB41L3 Missense_Mutation p.S130P 0.24 deleterious(0) probably_damaging(0.921) TCGA-2H-A9GF-01 18 6215771 6215771 A C L3MBTL4 Missense_Mutation p.V283G 0.39 deleterious(0) probably_damaging(0.977) TCGA-2H-A9GF-01 18 6950864 6950864 G A LAMA1 Missense_Mutation p.R2772C 0.50 tolerated(0.17) possibly_damaging(0.826) TCGA-2H-A9GF-01 19 10400795 10400795 C T ICAM5 Missense_Mutation p.L26F 0.36 tolerated_low_confidence(0.1) benign(0.007) TCGA-2H-A9GF-01 19 10943821 10943821 G A TMED1 Silent p.F178F 0.42 TCGA-2H-A9GF-01 19 12691933 12691933 G A ZNF490 Missense_Mutation p.T319M 0.40 deleterious(0.01) benign(0.133) TCGA-2H-A9GF-01 19 12984812 12984812 G A MAST1 Missense_Mutation p.A1281T 0.31 tolerated_low_confidence(0.19) benign(0.129) TCGA-2H-A9GF-01 19 14203873 14203874 - A PRKACA 3'UTR 0.26 TCGA-2H-A9GF-01 19 16146784 16146784 G A LINC00905 RNA 0.47 TCGA-2H-A9GF-01 19 18885765 18885765 C T CRTC1 Missense_Mutation p.A510V 0.29 tolerated(0.13) benign(0.135) TCGA-2H-A9GF-01 19 18967049 18967049 G A UPF1 Silent p.S588S 0.64 TCGA-2H-A9GF-01 19 19609470 19609470 C G GATAD2A Missense_Mutation p.N381K 0.15 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 19 22155989 22155989 T C ZNF208 Missense_Mutation p.K616R 0.30 deleterious(0.02) possibly_damaging(0.687) TCGA-2H-A9GF-01 19 22784354 22784354 A C AC011467.1 5'Flank 0.19 TCGA-2H-A9GF-01 19 2833992 2833992 C T ZNF554 Silent p.S253S 0.43 TCGA-2H-A9GF-01 19 33078100 33078100 G A PDCD5 Intron 0.24 TCGA-2H-A9GF-01 19 33309051 33309052 - G TDRD12 Frame_Shift_Ins p.Q1127Afs*18 0.22 TCGA-2H-A9GF-01 19 35512627 35512627 C G GRAMD1A Missense_Mutation p.L538V 0.36 tolerated(0.19) benign(0.078) TCGA-2H-A9GF-01 19 3624063 3624063 C T CACTIN Missense_Mutation p.D89N 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-2H-A9GF-01 19 37643680 37643680 C A ZNF585A Missense_Mutation p.R319I 0.34 deleterious(0.01) probably_damaging(1) TCGA-2H-A9GF-01 19 37945911 37945911 G A ZNF569 Intron 0.57 TCGA-2H-A9GF-01 19 37975066 37975066 A G ZNF570 Missense_Mutation p.K181R 0.45 deleterious(0.03) benign(0) TCGA-2H-A9GF-01 19 39694595 39694595 C T SYCN Silent p.T100T 0.33 TCGA-2H-A9GF-01 19 40761157 40761157 G A AKT2 Silent p.T65T 0.24 TCGA-2H-A9GF-01 19 41021258 41021258 C T SPTBN4 Missense_Mutation p.R936C 0.27 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GF-01 19 41060159 41060159 G A SPTBN4 Missense_Mutation p.R1594Q 0.50 tolerated(0.6) benign(0.151) TCGA-2H-A9GF-01 19 42931357 42931357 C T LIPE 5'UTR 0.18 TCGA-2H-A9GF-01 19 50002780 50002781 - CG RPS11 Frame_Shift_Ins p.G123Afs*13 0.27 TCGA-2H-A9GF-01 19 54409689 54409689 C T PRKCG Missense_Mutation p.P628L 0.38 deleterious(0) benign(0.043) TCGA-2H-A9GF-01 19 54466318 54466318 C - CACNG8 5'UTR 0.47 TCGA-2H-A9GF-01 19 548656 548656 G A GZMM Silent p.E109E 0.45 TCGA-2H-A9GF-01 19 58005060 58005060 T G ZNF419 Missense_Mutation p.F380V 0.26 tolerated(0.6) possibly_damaging(0.777) TCGA-2H-A9GF-01 19 58596076 58596076 G A ZSCAN18 Silent p.P559P 0.21 TCGA-2H-A9GF-01 19 58989057 58989057 G T ZNF446 Missense_Mutation p.E132D 0.40 tolerated(0.09) benign(0.067) TCGA-2H-A9GF-01 19 7125392 7125392 C T INSR Missense_Mutation p.V1054M 0.41 deleterious(0.02) probably_damaging(0.998) TCGA-2H-A9GF-01 19 9066597 9066597 G T MUC16 Missense_Mutation p.T6950N 0.36 unknown(0) TCGA-2H-A9GF-01 19 9076366 9076366 T G MUC16 Missense_Mutation p.S3694R 0.31 unknown(0) TCGA-2H-A9GF-01 19 9082408 9082408 C T MUC16 Missense_Mutation p.R3136K 0.28 unknown(0) TCGA-2H-A9GF-01 1 101004651 101004651 C A GPR88 Silent p.I43I 0.15 TCGA-2H-A9GF-01 1 103342116 103342116 C T COL11A1 3'UTR 0.16 TCGA-2H-A9GF-01 1 152084220 152084220 G A TCHH Silent p.L491L 0.22 TCGA-2H-A9GF-01 1 156130754 156130754 G T SEMA4A Missense_Mutation p.E248D 0.23 tolerated(0.25) benign(0.057) TCGA-2H-A9GF-01 1 158324252 158324252 C G CD1E Missense_Mutation p.H48Q 0.50 tolerated(0.29) benign(0.002) TCGA-2H-A9GF-01 1 159162426 159162426 C T CADM3 Silent p.S130S 0.43 TCGA-2H-A9GF-01 1 171753185 171753185 C T METTL13 Silent p.G153G 0.20 TCGA-2H-A9GF-01 1 175375752 175375752 C A TNR Silent p.L33L 0.23 TCGA-2H-A9GF-01 1 178855160 178855160 G A RALGPS2 Missense_Mutation p.G366E 0.21 tolerated(0.77) benign(0.231) TCGA-2H-A9GF-01 1 180240745 180240745 C T LHX4 Intron 0.40 TCGA-2H-A9GF-01 1 186331970 186331972 TCT - TPR In_Frame_Del p.E232del 0.26 TCGA-2H-A9GF-01 1 210416287 210416287 C T SERTAD4 3'UTR 0.29 TCGA-2H-A9GF-01 1 223958169 223958169 C T CAPN2 Silent p.D615D 0.16 TCGA-2H-A9GF-01 1 248616437 248616437 C A OR2T2 Missense_Mutation p.F113L 0.10 tolerated(0.15) benign(0.066) TCGA-2H-A9GF-01 1 248737812 248737812 C - OR2T34 Frame_Shift_Del p.V83Cfs*28 0.14 TCGA-2H-A9GF-01 1 27057972 27057972 C A ARID1A Nonsense_Mutation p.Y560* 0.20 TCGA-2H-A9GF-01 1 34663145 34663145 G A C1orf94 Missense_Mutation p.A214T 0.58 tolerated(0.09) benign(0.036) TCGA-2H-A9GF-01 1 35657099 35657099 C T SFPQ Missense_Mutation p.R287K 0.19 tolerated(0.9) benign(0.014) TCGA-2H-A9GF-01 1 36291296 36291296 C T AGO4 Missense_Mutation p.R169C 0.28 deleterious(0) benign(0.426) TCGA-2H-A9GF-01 1 44137514 44137514 G A KDM4A Missense_Mutation p.A568T 0.28 tolerated(0.85) benign(0) TCGA-2H-A9GF-01 1 49052820 49052820 G A AGBL4 Missense_Mutation p.R375W 0.29 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GF-01 1 65858361 65858361 G A DNAJC6 Silent p.A572A 0.24 TCGA-2H-A9GF-01 1 78429758 78429760 GAA - FUBP1 In_Frame_Del p.L343del 0.35 TCGA-2H-A9GF-01 1 82456740 82456740 G T LPHN2 Missense_Mutation p.D1375Y 0.61 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-2H-A9GF-01 1 91781372 91781372 G A HFM1 Missense_Mutation p.T1047M 0.41 tolerated(1) benign(0.001) TCGA-2H-A9GF-01 20 1285832 1285832 C T SNPH Missense_Mutation p.R207C 0.22 deleterious(0) probably_damaging(0.988) TCGA-2H-A9GF-01 20 14306834 14306834 C A FLRT3 Missense_Mutation p.W440L 0.38 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 20 21367540 21367540 C T XRN2 Missense_Mutation p.R895W 0.08 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-2H-A9GF-01 20 32346608 32346608 C T ZNF341 Nonsense_Mutation p.R335* 0.19 TCGA-2H-A9GF-01 20 39985706 39985706 C A LPIN3 Silent p.A610A 0.16 TCGA-2H-A9GF-01 20 4202294 4202294 G A ADRA1D Missense_Mutation p.A532V 0.33 deleterious_low_confidence(0.03) benign(0.038) TCGA-2H-A9GF-01 20 48698320 48698320 G A UBE2V1 3'UTR 0.42 TCGA-2H-A9GF-01 20 52193535 52193535 C T ZNF217 Missense_Mutation p.A590T 0.27 tolerated(0.76) benign(0.003) TCGA-2H-A9GF-01 20 55027468 55027468 G A CASS4 Silent p.S412S 0.53 TCGA-2H-A9GF-01 20 55093338 55093338 G A RTFDC1 3'UTR 0.30 TCGA-2H-A9GF-01 20 56227338 56227338 G A PMEPA1 Missense_Mutation p.S212L 0.30 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GF-01 20 57036333 57036333 G A APCDD1L Missense_Mutation p.T340M 0.41 tolerated(0.18) benign(0.053) TCGA-2H-A9GF-01 20 62737688 62737688 G A NPBWR2 Missense_Mutation p.A166V 0.45 tolerated(1) benign(0.003) TCGA-2H-A9GF-01 21 44283655 44283655 C T WDR4 Silent p.K116K 0.22 TCGA-2H-A9GF-01 22 18613629 18613629 C T TUBA8 Missense_Mutation p.P359L 0.26 deleterious_low_confidence(0) benign(0.093) TCGA-2H-A9GF-01 22 19121854 19121854 T C DGCR14 Missense_Mutation p.K429R 0.08 tolerated(0.3) probably_damaging(0.989) TCGA-2H-A9GF-01 22 20759771 20759771 G C ZNF74 Missense_Mutation p.G150R 0.39 tolerated(0.47) benign(0.016) TCGA-2H-A9GF-01 22 21804160 21804160 G A HIC2 3'UTR 0.30 TCGA-2H-A9GF-01 22 37603090 37603090 G A SSTR3 Silent p.S251S 0.57 TCGA-2H-A9GF-01 22 41547895 41547895 G A EP300 Missense_Mutation p.S959N 0.28 possibly_damaging(0.884) TCGA-2H-A9GF-01 2 100046332 100046332 G A REV1 Missense_Mutation p.A506V 0.17 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 2 102964474 102964474 T C IL1RL1 Missense_Mutation p.V347A 0.52 tolerated(0.15) benign(0.009) TCGA-2H-A9GF-01 2 113089797 113089797 C A ZC3H6 Missense_Mutation p.P1101Q 0.38 tolerated(0.2) benign(0.372) TCGA-2H-A9GF-01 2 130831566 130831566 G T POTEF 3'UTR 0.23 TCGA-2H-A9GF-01 2 136033263 136033264 - C ZRANB3 Frame_Shift_Ins p.A345Cfs*18 0.16 TCGA-2H-A9GF-01 2 141272290 141272290 G A LRP1B Missense_Mutation p.S2734F 0.26 possibly_damaging(0.788) TCGA-2H-A9GF-01 2 141747211 141747211 G A LRP1B Missense_Mutation p.P887L 0.20 probably_damaging(0.987) TCGA-2H-A9GF-01 2 148687942 148687942 A T ACVR2A 3'UTR 0.30 TCGA-2H-A9GF-01 2 149829945 149829945 G A KIF5C Missense_Mutation p.V405I 0.10 tolerated(0.81) benign(0.001) TCGA-2H-A9GF-01 2 160032893 160032893 T - TANC1 Frame_Shift_Del p.L590* 0.35 TCGA-2H-A9GF-01 2 164464755 164464755 G T FIGN 3'UTR 0.43 TCGA-2H-A9GF-01 2 164466996 164466996 G T FIGN Missense_Mutation p.A449E 0.23 deleterious(0.05) benign(0.051) TCGA-2H-A9GF-01 2 165578947 165578947 T C COBLL1 Silent p.K249K 0.33 TCGA-2H-A9GF-01 2 166198961 166198961 T G SCN2A Silent p.V848V 0.21 TCGA-2H-A9GF-01 2 166231459 166231459 C A SCN2A Missense_Mutation p.L1413M 0.17 deleterious(0) probably_damaging(1) TCGA-2H-A9GF-01 2 179469737 179469737 C T TTN Missense_Mutation p.R18056Q 0.33 TCGA-2H-A9GF-01 2 198949685 198949685 G T PLCL1 Missense_Mutation p.A482S 0.37 tolerated(0.48) benign(0.137) TCGA-2H-A9GF-01 2 204048019 204048019 C G NBEAL1 Missense_Mutation p.L2176V 0.50 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 2 204299922 204299922 A C ABI2 3'Flank 0.36 TCGA-2H-A9GF-01 2 220078017 220078017 C T ABCB6 Missense_Mutation p.R584H 0.26 tolerated(0.6) benign(0) TCGA-2H-A9GF-01 2 233347591 233347591 T G ECEL1 Missense_Mutation p.K552T 0.21 tolerated(0.07) benign(0.343) TCGA-2H-A9GF-01 2 238280852 238280852 G A COL6A3 Missense_Mutation p.R1270W 0.29 probably_damaging(1) TCGA-2H-A9GF-01 2 242758459 242758459 G A NEU4 3'UTR 0.24 TCGA-2H-A9GF-01 2 27454356 27454356 C T CAD Missense_Mutation p.R770C 0.26 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GF-01 2 33736895 33736895 G A RASGRP3 5'UTR 0.34 TCGA-2H-A9GF-01 2 40656990 40656990 G T SLC8A1 Missense_Mutation p.S144Y 0.23 deleterious(0) probably_damaging(1) TCGA-2H-A9GF-01 2 42508091 42508091 G C EML4 Missense_Mutation p.E257Q 0.17 tolerated(0.21) possibly_damaging(0.461) TCGA-2H-A9GF-01 2 55471307 55471307 C G MTIF2 Missense_Mutation p.G390A 0.53 deleterious(0) probably_damaging(1) TCGA-2H-A9GF-01 2 55912086 55912086 C T PNPT1 Missense_Mutation p.R132Q 0.47 deleterious(0) probably_damaging(1) TCGA-2H-A9GF-01 2 5838192 5838192 T C SOX11 3'UTR 0.21 TCGA-2H-A9GF-01 2 74275330 74275330 G A TET3 Silent p.S627S 0.22 TCGA-2H-A9GF-01 2 75425905 75425905 T C TACR1 Silent p.V52V 0.08 TCGA-2H-A9GF-01 2 80531434 80531434 T C LRRTM1 5'UTR 0.30 TCGA-2H-A9GF-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.20 TCGA-2H-A9GF-01 2 88828813 88828813 G A TEX37 Missense_Mutation p.D122N 0.09 tolerated_low_confidence(0.11) probably_damaging(0.95) TCGA-2H-A9GF-01 2 89384775 89384775 C T IGKV3-15 Silent p.R81R 0.51 TCGA-2H-A9GF-01 2 95770416 95770416 C T MRPS5 Silent p.L244L 0.27 TCGA-2H-A9GF-01 3 113438891 113438891 A C NAA50 3'UTR 0.18 TCGA-2H-A9GF-01 3 119361392 119361392 G A POPDC2 Silent p.L342L 0.12 TCGA-2H-A9GF-01 3 120121725 120121725 C A FSTL1 Missense_Mutation p.E245D 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-2H-A9GF-01 3 134079102 134079102 G A AMOTL2 Missense_Mutation p.R577C 0.21 tolerated(0.36) benign(0.008) TCGA-2H-A9GF-01 3 134322603 134322603 G A KY Missense_Mutation p.H602Y 0.31 tolerated(0.07) benign(0.405) TCGA-2H-A9GF-01 3 134369828 134369828 C T KY 5'UTR 0.23 TCGA-2H-A9GF-01 3 134825426 134825426 T C EPHB1 Silent p.P314P 0.29 TCGA-2H-A9GF-01 3 134851749 134851749 C T EPHB1 Silent p.G385G 0.54 TCGA-2H-A9GF-01 3 135721110 135721110 A G PPP2R3A Missense_Mutation p.K257R 0.19 tolerated_low_confidence(0.09) probably_damaging(0.98) TCGA-2H-A9GF-01 3 137484171 137484171 G T SOX14 Missense_Mutation p.C182F 0.25 deleterious(0.01) benign(0.032) TCGA-2H-A9GF-01 3 137981408 137981408 T C NME9 Missense_Mutation p.R256G 0.54 tolerated_low_confidence(0.17) benign(0.002) TCGA-2H-A9GF-01 3 142778690 142778690 C T U2SURP 3'UTR 0.20 TCGA-2H-A9GF-01 3 148876470 148876470 C T HPS3 Missense_Mutation p.S570F 0.28 tolerated(0.7) benign(0.325) TCGA-2H-A9GF-01 3 158300474 158300474 G T MLF1 5'UTR 0.21 TCGA-2H-A9GF-01 3 164905923 164905923 A T SLITRK3 Missense_Mutation p.F899Y 0.19 deleterious_low_confidence(0.03) benign(0.294) TCGA-2H-A9GF-01 3 179605521 179605521 C A PEX5L Missense_Mutation p.D84Y 0.27 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2H-A9GF-01 3 183952435 183952435 C T VWA5B2 Silent p.H279H 0.29 TCGA-2H-A9GF-01 3 3084090 3084090 G T CNTN4 Missense_Mutation p.R832L 0.25 deleterious(0) benign(0.013) TCGA-2H-A9GF-01 3 36526484 36526484 C T STAC Missense_Mutation p.R169C 0.28 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 3 36898232 36898232 C T TRANK1 Missense_Mutation p.R950H 0.26 deleterious(0.05) probably_damaging(0.972) TCGA-2H-A9GF-01 3 46417157 46417157 G - CCR5 3'UTR 0.20 TCGA-2H-A9GF-01 3 4744601 4744601 G A ITPR1 Missense_Mutation p.V1527M 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-2H-A9GF-01 3 48465462 48465462 G A PLXNB1 Missense_Mutation p.R187W 0.63 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 3 49331951 49331951 G T USP4 Missense_Mutation p.P591Q 0.25 tolerated(0.78) benign(0.004) TCGA-2H-A9GF-01 3 49941105 49941111 GGCTGGG - MST1R 5'Flank 0.50 TCGA-2H-A9GF-01 3 51395429 51395429 A C DOCK3 Missense_Mutation p.K1602T 0.11 deleterious(0.02) possibly_damaging(0.848) TCGA-2H-A9GF-01 3 69025952 69025952 G T EOGT 3'UTR 0.35 TCGA-2H-A9GF-01 3 74411155 74411155 T G CNTN3 Missense_Mutation p.K417T 0.44 tolerated(0.06) benign(0.012) TCGA-2H-A9GF-01 3 7456715 7456715 G A GRM7 Missense_Mutation p.D347N 0.18 tolerated(0.09) probably_damaging(0.997) TCGA-2H-A9GF-01 3 7735349 7735349 G A GRM7 Intron 0.29 TCGA-2H-A9GF-01 3 77595601 77595601 A G ROBO2 Silent p.K365K 0.16 TCGA-2H-A9GF-01 3 78680429 78680429 T A ROBO1 Nonsense_Mutation p.R1170* 0.18 TCGA-2H-A9GF-01 3 9438264 9438264 C G SETD5 5'Flank 0.23 TCGA-2H-A9GF-01 3 98002325 98002325 T C OR5H2 Silent p.S198S 0.29 TCGA-2H-A9GF-01 4 109674133 109674133 C G ETNPPL Missense_Mutation p.R179T 0.37 tolerated(0.08) possibly_damaging(0.903) TCGA-2H-A9GF-01 4 113567590 113567590 A G LARP7 Missense_Mutation p.S103G 0.32 tolerated(0.09) benign(0.099) TCGA-2H-A9GF-01 4 114158193 114158193 G A ANK2 Silent p.A178A 0.45 TCGA-2H-A9GF-01 4 114199051 114199051 T G ANK2 Missense_Mutation p.L581R 0.29 probably_damaging(1) TCGA-2H-A9GF-01 4 118005607 118005607 A C TRAM1L1 Missense_Mutation p.L315V 0.30 deleterious(0) possibly_damaging(0.507) TCGA-2H-A9GF-01 4 119026255 119026255 A G NDST3 Missense_Mutation p.H355R 0.21 tolerated(0.19) benign(0.336) TCGA-2H-A9GF-01 4 126328257 126328257 C A FAT4 Missense_Mutation p.P1844T 0.30 benign(0.101) TCGA-2H-A9GF-01 4 13571558 13571558 A G BOD1L1 3'UTR 0.29 TCGA-2H-A9GF-01 4 138449720 138449720 A C PCDH18 Missense_Mutation p.D884E 0.15 deleterious(0.01) probably_damaging(0.94) TCGA-2H-A9GF-01 4 156632138 156632138 C T GUCY1A3 Missense_Mutation p.S274L 0.33 deleterious(0.03) benign(0.291) TCGA-2H-A9GF-01 4 158064985 158064985 T G GLRB Missense_Mutation p.F260V 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-2H-A9GF-01 4 165878787 165878787 A T FAM218A 3'UTR 0.15 TCGA-2H-A9GF-01 4 174459693 174459693 C T HAND2-AS1 RNA 0.56 TCGA-2H-A9GF-01 4 177608398 177608398 G T VEGFC Missense_Mutation p.T363K 0.21 tolerated(0.37) benign(0.397) TCGA-2H-A9GF-01 4 188924613 188924613 G A ZFP42 Missense_Mutation p.V218I 0.27 tolerated(0.09) benign(0.002) TCGA-2H-A9GF-01 4 26750061 26750061 C A TBC1D19 Silent p.R450R 0.35 TCGA-2H-A9GF-01 4 62936530 62936530 C T LPHN3 Silent p.R1438R 0.86 TCGA-2H-A9GF-01 4 70361097 70361097 G A UGT2B4 Silent p.A161A 0.35 TCGA-2H-A9GF-01 4 82074836 82074836 C T PRKG2 Missense_Mutation p.E318K 0.32 deleterious(0.03) probably_damaging(1) TCGA-2H-A9GF-01 4 8228843 8228843 C T SH3TC1 Silent p.D474D 0.67 TCGA-2H-A9GF-01 5 110459844 110459844 A C WDR36 Silent p.S825S 0.16 TCGA-2H-A9GF-01 5 118824941 118824941 G A HSD17B4 Missense_Mutation p.C251Y 0.16 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GF-01 5 119800333 119800333 T C PRR16 5'UTR 0.16 TCGA-2H-A9GF-01 5 127654614 127654614 G A FBN2 Silent p.C1517C 0.47 TCGA-2H-A9GF-01 5 131811657 131811657 A G AC116366.6 5'Flank 0.29 TCGA-2H-A9GF-01 5 132534840 132534840 C T FSTL4 Missense_Mutation p.E826K 0.67 deleterious(0) possibly_damaging(0.858) TCGA-2H-A9GF-01 5 134871540 134871540 G A NEUROG1 5'UTR 0.56 TCGA-2H-A9GF-01 5 137727488 137727488 G A KDM3B Missense_Mutation p.G723S 0.70 tolerated_low_confidence(0.59) benign(0.021) TCGA-2H-A9GF-01 5 140740924 140740924 G A PCDHGB2 Missense_Mutation p.G408S 0.50 tolerated(0.27) possibly_damaging(0.647) TCGA-2H-A9GF-01 5 140812168 140812168 G T PCDHGA12 Silent p.P614P 0.22 TCGA-2H-A9GF-01 5 145608578 145608578 C T RBM27 Missense_Mutation p.R125C 0.22 deleterious(0.01) possibly_damaging(0.8) TCGA-2H-A9GF-01 5 147715135 147715135 C T SPINK9 5'UTR 0.47 TCGA-2H-A9GF-01 5 149323840 149323840 C T PDE6A Missense_Mutation p.V133I 0.24 tolerated(0.08) probably_damaging(0.982) TCGA-2H-A9GF-01 5 156649893 156649893 A C ITK Missense_Mutation p.E172D 0.30 tolerated(0.51) benign(0.002) TCGA-2H-A9GF-01 5 158634791 158634791 C T RNF145 Intron 0.49 TCGA-2H-A9GF-01 5 175111043 175111043 A C HRH2 Missense_Mutation p.L269F 0.32 tolerated(0.6) benign(0.008) TCGA-2H-A9GF-01 5 176295959 176295959 G A UNC5A Missense_Mutation p.V239I 0.37 tolerated(0.06) probably_damaging(0.947) TCGA-2H-A9GF-01 5 178416028 178416028 G A GRM6 Missense_Mutation p.A421V 0.15 tolerated(0.06) benign(0.009) TCGA-2H-A9GF-01 5 178580493 178580493 G A ADAMTS2 Missense_Mutation p.A505V 0.50 deleterious(0.02) possibly_damaging(0.754) TCGA-2H-A9GF-01 5 32711734 32711734 C T NPR3 5'UTR 0.88 TCGA-2H-A9GF-01 5 40764855 40764855 T G PRKAA1 Missense_Mutation p.K451T 0.29 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GF-01 5 63256866 63256866 G A HTR1A Silent p.R227R 0.30 TCGA-2H-A9GF-01 5 64981212 64981212 C T SGTB Silent p.K154K 0.37 TCGA-2H-A9GF-01 5 70860608 70860608 G A BDP1 Missense_Mutation p.E2591K 0.23 deleterious(0.03) possibly_damaging(0.724) TCGA-2H-A9GF-01 5 83356228 83356228 G A EDIL3 Missense_Mutation p.T343M 0.25 deleterious(0.04) probably_damaging(0.996) TCGA-2H-A9GF-01 6 119215407 119215407 T A ASF1A 5'UTR 0.70 TCGA-2H-A9GF-01 6 119228739 119228739 C T ASF1A Missense_Mutation p.S192L 0.42 tolerated(0.14) benign(0.02) TCGA-2H-A9GF-01 6 119281281 119281281 T A FAM184A Missense_Mutation p.Y1137F 0.29 deleterious(0.01) benign(0.113) TCGA-2H-A9GF-01 6 13287429 13287429 T A TBC1D7 Intron 0.15 TCGA-2H-A9GF-01 6 146755848 146755848 C T GRM1 Silent p.S1167S 0.38 TCGA-2H-A9GF-01 6 152469273 152469273 G T SYNE1 Missense_Mutation p.L8295M 0.42 probably_damaging(0.909) TCGA-2H-A9GF-01 6 159659685 159659685 C T FNDC1 Nonsense_Mutation p.R1390* 0.41 TCGA-2H-A9GF-01 6 22570420 22570420 G A HDGFL1 Missense_Mutation p.A206T 0.50 tolerated_low_confidence(1) benign(0.002) TCGA-2H-A9GF-01 6 26056594 26056594 C G HIST1H1C Missense_Mutation p.K21N 0.14 tolerated(0.08) benign(0.403) TCGA-2H-A9GF-01 6 26413495 26413495 G A BTN3A1 Missense_Mutation p.D373N 0.21 deleterious(0.03) benign(0.109) TCGA-2H-A9GF-01 6 2784625 2784625 G A WRNIP1 Missense_Mutation p.M570I 0.56 deleterious(0) possibly_damaging(0.771) TCGA-2H-A9GF-01 6 28403283 28403283 C T ZSCAN23 Silent p.E170E 0.21 TCGA-2H-A9GF-01 6 30570393 30570393 G A PPP1R10 Missense_Mutation p.P678L 0.25 deleterious_low_confidence(0.01) unknown(0) TCGA-2H-A9GF-01 6 32847624 32847624 G A PPP1R2P1 5'Flank 0.62 TCGA-2H-A9GF-01 6 35911951 35911951 C T SLC26A8 Missense_Mutation p.R880Q 0.60 tolerated_low_confidence(0.64) benign(0) TCGA-2H-A9GF-01 6 41903057 41903057 C T CCND3 3'UTR 0.34 TCGA-2H-A9GF-01 6 43251696 43251696 T A TTBK1 Missense_Mutation p.L1073Q 0.17 possibly_damaging(0.483) TCGA-2H-A9GF-01 6 53747766 53747766 T C LRRC1 Silent p.N146N 0.23 TCGA-2H-A9GF-01 6 57512588 57512588 A C PRIM2 3'UTR 0.13 TCGA-2H-A9GF-01 6 65301179 65301179 C T EYS Silent p.Q1527Q 0.22 TCGA-2H-A9GF-01 6 65301203 65301203 T G EYS Missense_Mutation p.K1519N 0.25 tolerated(0.07) benign(0.017) TCGA-2H-A9GF-01 6 66205147 66205147 A C EYS Missense_Mutation p.F53V 0.09 deleterious_low_confidence(0.02) benign(0.021) TCGA-2H-A9GF-01 6 70639314 70639314 C A COL19A1 Intron 0.36 TCGA-2H-A9GF-01 6 72889338 72889338 T C RIMS1 Missense_Mutation p.W178R 0.48 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GF-01 6 72889607 72889607 T C RIMS1 Silent p.P267P 0.47 TCGA-2H-A9GF-01 6 72922921 72922921 T G RIMS1 Intron 0.43 TCGA-2H-A9GF-01 6 73043483 73043483 A C RIMS1 Missense_Mutation p.K1437N 0.50 deleterious(0) benign(0.16) TCGA-2H-A9GF-01 7 110303712 110303712 T C IMMP2L Silent p.K158K 0.23 TCGA-2H-A9GF-01 7 111423942 111423942 A G DOCK4 Silent p.T1156T 0.42 TCGA-2H-A9GF-01 7 11485918 11485918 G A THSD7A Missense_Mutation p.S945F 0.29 deleterious(0.01) benign(0.342) TCGA-2H-A9GF-01 7 121753715 121753715 T A AASS Missense_Mutation p.E368V 0.67 deleterious(0) possibly_damaging(0.673) TCGA-2H-A9GF-01 7 12271644 12271644 T G TMEM106B 3'UTR 0.28 TCGA-2H-A9GF-01 7 128582203 128582203 C T IRF5 Missense_Mutation p.A23V 0.36 deleterious(0.01) possibly_damaging(0.761) TCGA-2H-A9GF-01 7 130037004 130037004 G A CEP41 3'UTR 0.77 TCGA-2H-A9GF-01 7 1582497 1582500 TTAT - MAFK 3'UTR 0.15 TCGA-2H-A9GF-01 7 19184648 19184648 C T FERD3L Missense_Mutation p.R113Q 0.36 deleterious(0) probably_damaging(1) TCGA-2H-A9GF-01 7 21583015 21583015 G A DNAH11 Missense_Mutation p.R51Q 0.10 benign(0.007) TCGA-2H-A9GF-01 7 21598459 21598459 T C DNAH11 Missense_Mutation p.S179P 0.24 possibly_damaging(0.5) TCGA-2H-A9GF-01 7 25163243 25163243 G A CYCS 3'UTR 0.20 TCGA-2H-A9GF-01 7 26240349 26240349 C G HNRNPA2B1 5'UTR 0.20 TCGA-2H-A9GF-01 7 30915161 30915161 G A FAM188B Missense_Mutation p.D621N 0.23 tolerated(0.21) possibly_damaging(0.55) TCGA-2H-A9GF-01 7 32110146 32110146 G A PDE1C Intron 0.40 TCGA-2H-A9GF-01 7 38468649 38468649 T G AMPH Intron 0.12 TCGA-2H-A9GF-01 7 4153768 4153768 G A SDK1 Missense_Mutation p.V1229I 0.32 tolerated(1) benign(0.006) TCGA-2H-A9GF-01 7 4153770 4153770 C T SDK1 Silent p.V1229V 0.11 TCGA-2H-A9GF-01 7 41728816 41728816 G A INHBA 3'UTR 0.20 TCGA-2H-A9GF-01 7 42004322 42004322 A G GLI3 Missense_Mutation p.F1450S 0.31 deleterious(0.01) possibly_damaging(0.827) TCGA-2H-A9GF-01 7 43594218 43594218 G A HECW1 Missense_Mutation p.R1513H 0.10 deleterious(0.02) possibly_damaging(0.577) TCGA-2H-A9GF-01 7 48321028 48321028 C T ABCA13 Missense_Mutation p.R2939C 0.57 possibly_damaging(0.794) TCGA-2H-A9GF-01 7 50658075 50658075 G A GRB10 3'UTR 0.40 TCGA-2H-A9GF-01 7 6456123 6456123 G C DAGLB Intron 0.31 TCGA-2H-A9GF-01 7 8126463 8126463 C T GLCCI1 3'UTR 0.21 TCGA-2H-A9GF-01 7 82544559 82544559 T - PCLO Frame_Shift_Del p.N4248Ifs*20 0.31 TCGA-2H-A9GF-01 7 94052362 94052362 G A COL1A2 Missense_Mutation p.E833K 0.29 unknown(0) TCGA-2H-A9GF-01 7 97922708 97922708 C T BAIAP2L1 3'UTR 0.73 TCGA-2H-A9GF-01 8 106814592 106814592 T C ZFPM2 Missense_Mutation p.L761P 0.31 tolerated(0.35) probably_damaging(0.999) TCGA-2H-A9GF-01 8 114111053 114111053 A C CSMD3 Missense_Mutation p.F283L 0.24 deleterious(0.03) possibly_damaging(0.491) TCGA-2H-A9GF-01 8 118188462 118188462 A G SLC30A8 3'Flank 0.19 TCGA-2H-A9GF-01 8 121561073 121561073 A T SNTB1 Missense_Mutation p.L421H 0.15 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GF-01 8 128751156 128751156 C T MYC Silent p.F231F 0.50 TCGA-2H-A9GF-01 8 144652708 144652708 C T MROH6 Silent p.P280P 0.30 TCGA-2H-A9GF-01 8 28574637 28574637 G A EXTL3 Missense_Mutation p.R354K 0.20 tolerated(0.96) benign(0.002) TCGA-2H-A9GF-01 8 30694695 30694695 A G TEX15 Silent p.F2652F 0.11 TCGA-2H-A9GF-01 8 48773481 48773481 C T PRKDC Missense_Mutation p.E2012K 0.30 benign(0.07) TCGA-2H-A9GF-01 8 48773490 48773490 C G PRKDC Missense_Mutation p.E2009Q 0.34 possibly_damaging(0.756) TCGA-2H-A9GF-01 8 92378943 92378943 A G SLC26A7 Missense_Mutation p.K542E 0.30 tolerated(0.07) possibly_damaging(0.742) TCGA-2H-A9GF-01 9 102626760 102626760 T - NR4A3 3'UTR 0.27 TCGA-2H-A9GF-01 9 107379982 107379982 G A OR13C9 Silent p.F168F 0.21 TCGA-2H-A9GF-01 9 110093951 110093951 T A RAD23B 3'UTR 0.40 TCGA-2H-A9GF-01 9 114803746 114803746 C T SUSD1 3'UTR 0.09 TCGA-2H-A9GF-01 9 115024805 115024805 A G PTBP3 Silent p.N176N 0.30 TCGA-2H-A9GF-01 9 139943641 139943641 G A ENTPD2 Intron 0.38 TCGA-2H-A9GF-01 9 140728899 140728899 C T EHMT1 Silent p.F1213F 0.28 TCGA-2H-A9GF-01 9 19516401 19516401 C T SLC24A2 Splice_Site p.X579_splice 0.33 TCGA-2H-A9GF-01 9 2115870 2115870 G C SMARCA2 Missense_Mutation p.V1169L 0.41 benign(0.097) TCGA-2H-A9GF-01 9 32631536 32631536 G T TAF1L Missense_Mutation p.L1348I 0.59 tolerated(0.06) probably_damaging(0.998) TCGA-2H-A9GF-01 9 73399029 73399029 T C TRPM3 Silent p.E380E 0.33 TCGA-2H-A9GF-01 9 75520871 75520871 T C ALDH1A1 Intron 0.43 TCGA-2H-A9GF-01 9 8341195 8341195 C T PTPRD Missense_Mutation p.R1674H 0.62 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GF-01 9 84533064 84533064 A G SPATA31D5P RNA 0.33 TCGA-2H-A9GF-01 9 847138 847138 C T DMRT1 Missense_Mutation p.A178V 0.29 tolerated(0.41) benign(0.02) TCGA-2H-A9GF-01 9 91994331 91994331 G A SEMA4D Missense_Mutation p.S626L 0.38 deleterious(0.01) possibly_damaging(0.875) TCGA-2H-A9GF-01 X 101909622 101909622 C G GPRASP1 Missense_Mutation p.P261A 0.40 tolerated(0.25) benign(0.01) TCGA-2H-A9GF-01 X 110496350 110496350 C G CAPN6 Missense_Mutation p.W131S 0.11 deleterious(0) probably_damaging(0.942) TCGA-2H-A9GF-01 X 113865309 113865309 A G HTR2C Intron 0.73 TCGA-2H-A9GF-01 X 125299490 125299490 C T DCAF12L2 Missense_Mutation p.E140K 0.44 tolerated(0.62) benign(0.001) TCGA-2H-A9GF-01 X 139585657 139585657 G A SOX3 3'UTR 0.71 TCGA-2H-A9GF-01 X 147084798 147084798 G A FMR1NB Missense_Mutation p.D119N 0.35 tolerated(0.49) possibly_damaging(0.728) TCGA-2H-A9GF-01 X 148037969 148037969 G T AFF2 Silent p.L798L 0.50 TCGA-2H-A9GF-01 X 149919522 149919522 G A MTMR1 Intron 0.67 TCGA-2H-A9GF-01 X 153421840 153421840 G A OPN1LW Silent p.V272V 0.47 TCGA-2H-A9GF-01 X 154158885 154158885 T - F8 Frame_Shift_Del p.V1061* 0.33 TCGA-2H-A9GF-01 X 34149725 34149725 C T FAM47A Missense_Mutation p.R224H 0.81 tolerated(0.32) probably_damaging(0.989) TCGA-2H-A9GF-01 X 39934109 39934110 - T BCOR Frame_Shift_Ins p.E164Rfs*22 0.49 TCGA-2H-A9GF-01 X 40510961 40510961 A T MED14 3'UTR 0.76 TCGA-2H-A9GF-01 X 41519766 41519766 C T CASK Missense_Mutation p.V253I 0.78 tolerated(0.48) benign(0.023) TCGA-2H-A9GF-01 X 53562355 53562355 C T HUWE1 Missense_Mutation p.M4213I 0.81 unknown(0) TCGA-2H-A9GF-01 X 88008520 88008520 T C CPXCR1 Silent p.S35S 0.87 TCGA-2H-A9GF-01 X 96354739 96354739 C T DIAPH2 Missense_Mutation p.A765V 0.85 deleterious(0.02) probably_damaging(0.975) TCGA-2H-A9GH-01 10 112838072 112838072 G A ADRA2A Silent p.L106L 0.58 TCGA-2H-A9GH-01 10 135165925 135165925 A G PRAP1 Missense_Mutation p.H146R 0.60 deleterious(0) probably_damaging(0.978) TCGA-2H-A9GH-01 10 61833950 61833950 T C ANK3 Missense_Mutation p.H2230R 0.46 benign(0) TCGA-2H-A9GH-01 10 6520982 6520982 G A PRKCQ Missense_Mutation p.T442M 0.43 deleterious(0) probably_damaging(0.989) TCGA-2H-A9GH-01 10 91528501 91528501 A G KIF20B Missense_Mutation p.I1660V 0.32 tolerated(0.17) benign(0.003) TCGA-2H-A9GH-01 10 95552621 95552621 C T LGI1 Missense_Mutation p.R209C 0.24 deleterious(0.01) possibly_damaging(0.772) TCGA-2H-A9GH-01 10 96998406 96998406 T C PDLIM1 Missense_Mutation p.K241R 0.44 tolerated(0.26) benign(0.049) TCGA-2H-A9GH-01 11 1025814 1025814 G A MUC6 Silent p.I930I 0.34 TCGA-2H-A9GH-01 11 103908168 103908168 G T DDI1 Silent p.L206L 0.30 TCGA-2H-A9GH-01 11 105483060 105483060 T G GRIA4 Missense_Mutation p.F49C 0.15 tolerated(0.18) probably_damaging(0.92) TCGA-2H-A9GH-01 11 117100474 117100474 G A PCSK7 Silent p.F29F 0.36 TCGA-2H-A9GH-01 11 134244996 134244996 C T GLB1L2 3'UTR 0.17 TCGA-2H-A9GH-01 11 5153614 5153614 A C OR52A5 Missense_Mutation p.F87V 0.44 deleterious(0.01) possibly_damaging(0.45) TCGA-2H-A9GH-01 11 56058355 56058355 A C OR8H1 Missense_Mutation p.F62V 0.26 deleterious(0) probably_damaging(0.95) TCGA-2H-A9GH-01 11 56431942 56431942 A G OR5AR1 Missense_Mutation p.R261G 0.13 deleterious(0) possibly_damaging(0.681) TCGA-2H-A9GH-01 11 57382017 57382017 C A SERPING1 Missense_Mutation p.P489H 0.51 deleterious(0) probably_damaging(1) TCGA-2H-A9GH-01 11 57464282 57464282 G T ZDHHC5 Missense_Mutation p.K353N 0.48 deleterious(0) possibly_damaging(0.893) TCGA-2H-A9GH-01 11 62606983 62606983 C T WDR74 Silent p.L20L 0.30 TCGA-2H-A9GH-01 12 108045467 108045467 A C BTBD11 Missense_Mutation p.K1003T 0.68 tolerated(0.44) probably_damaging(0.957) TCGA-2H-A9GH-01 12 44915837 44915837 A C NELL2 Silent p.T757T 0.17 TCGA-2H-A9GH-01 12 56431851 56431851 C T IKZF4 3'UTR 0.12 TCGA-2H-A9GH-01 12 8800754 8800754 C T MFAP5 Missense_Mutation p.R152H 0.48 deleterious(0) probably_damaging(0.912) TCGA-2H-A9GH-01 12 97038026 97038026 A C C12orf55 Missense_Mutation p.S1463R 0.21 tolerated(0.26) benign(0.258) TCGA-2H-A9GH-01 12 97038039 97038039 G C C12orf55 Missense_Mutation p.R1467T 0.30 deleterious(0) benign(0.36) TCGA-2H-A9GH-01 13 20633622 20633622 A T ZMYM2 Missense_Mutation p.I887F 0.67 deleterious(0) benign(0.212) TCGA-2H-A9GH-01 13 39587469 39587469 G A PROSER1 Silent p.G640G 0.62 TCGA-2H-A9GH-01 14 101507721 101507721 C T MIR300 RNA 0.53 TCGA-2H-A9GH-01 14 102029144 102029144 G T DIO3 3'UTR 0.22 TCGA-2H-A9GH-01 14 102461351 102461351 A G DYNC1H1 Missense_Mutation p.D1121G 0.06 probably_damaging(0.996) TCGA-2H-A9GH-01 14 106621979 106621979 A G IGHV3-16 Missense_Mutation p.I89T 0.20 deleterious_low_confidence(0.03) possibly_damaging(0.533) TCGA-2H-A9GH-01 14 20404047 20404047 T C OR4K1 Silent p.S74S 0.49 TCGA-2H-A9GH-01 14 24702536 24702536 C T GMPR2 Missense_Mutation p.S44F 0.29 deleterious(0) possibly_damaging(0.864) TCGA-2H-A9GH-01 14 45642264 45642264 G A FANCM Missense_Mutation p.E723K 0.27 deleterious(0.05) benign(0.009) TCGA-2H-A9GH-01 14 70238180 70238180 C T SRSF5 3'UTR 0.19 TCGA-2H-A9GH-01 14 73974888 73974888 C T HEATR4 Missense_Mutation p.D611N 0.30 tolerated(0.39) benign(0.051) TCGA-2H-A9GH-01 14 94008860 94008860 C A UNC79 Silent p.R348R 0.57 TCGA-2H-A9GH-01 15 48734034 48734034 T C FBN1 Missense_Mutation p.E2016G 0.21 probably_damaging(0.999) TCGA-2H-A9GH-01 15 50152608 50152608 C A ATP8B4 Missense_Mutation p.R1121L 0.41 tolerated(0.06) possibly_damaging(0.676) TCGA-2H-A9GH-01 15 54586259 54586259 T G UNC13C Missense_Mutation p.L1329V 0.22 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-2H-A9GH-01 15 74427834 74427834 T A ISLR2 3'UTR 0.32 TCGA-2H-A9GH-01 15 90170626 90170626 C T TICRR 3'UTR 0.39 TCGA-2H-A9GH-01 16 11855856 11855856 A G ZC3H7A Missense_Mutation p.I708T 0.55 deleterious(0) possibly_damaging(0.517) TCGA-2H-A9GH-01 16 29825015 29825015 G C PRRT2 Missense_Mutation p.A214P 0.54 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2H-A9GH-01 16 30734421 30734421 C G SRCAP Missense_Mutation p.P1344A 0.18 possibly_damaging(0.539) TCGA-2H-A9GH-01 16 732326 732326 G A STUB1 Intron 0.20 TCGA-2H-A9GH-01 17 27941267 27941267 T C ANKRD13B 3'UTR 0.65 TCGA-2H-A9GH-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.78 deleterious(0.05) benign(0.006) TCGA-2H-A9GH-01 17 39240822 39240822 C T KRTAP4-7 Missense_Mutation p.R122C 0.87 deleterious(0.02) unknown(0) TCGA-2H-A9GH-01 17 39296226 39296226 G A KRTAP4-6 Missense_Mutation p.R172C 0.26 deleterious(0.02) unknown(0) TCGA-2H-A9GH-01 17 4872598 4872598 A G CAMTA2 Missense_Mutation p.I1129T 0.10 deleterious(0.04) probably_damaging(0.992) TCGA-2H-A9GH-01 17 57079002 57079002 C A TRIM37 Silent p.G923G 0.77 TCGA-2H-A9GH-01 17 62130146 62130146 C T ERN1 Silent p.E749E 0.70 TCGA-2H-A9GH-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.77 TCGA-2H-A9GH-01 17 8371098 8371098 T C NDEL1 3'UTR 0.82 TCGA-2H-A9GH-01 17 9791263 9791263 C T GLP2R Silent p.A433A 0.08 TCGA-2H-A9GH-01 18 10671605 10671605 T C PIEZO2 Silent p.E2726E 0.49 TCGA-2H-A9GH-01 18 44555352 44555352 A G TCEB3C Missense_Mutation p.F288L 0.07 tolerated(1) benign(0.025) TCGA-2H-A9GH-01 18 44561163 44561163 G C TCEB3B Missense_Mutation p.P158R 0.57 tolerated(0.51) benign(0.003) TCGA-2H-A9GH-01 18 66678251 66678251 C G CCDC102B Missense_Mutation p.N448K 0.58 deleterious(0.04) benign(0.356) TCGA-2H-A9GH-01 18 6927513 6927513 G A LINC00668 RNA 0.55 TCGA-2H-A9GH-01 18 8784425 8784425 C G SOGA2 Missense_Mutation p.P439A 0.29 tolerated(0.76) benign(0.025) TCGA-2H-A9GH-01 19 37369641 37369641 A C ZNF345 3'UTR 0.25 TCGA-2H-A9GH-01 19 40276679 40276679 G T LEUTX Missense_Mutation p.K137N 0.64 deleterious(0.02) benign(0.072) TCGA-2H-A9GH-01 19 41008781 41008781 G C SPTBN4 Missense_Mutation p.D435H 0.18 deleterious(0) possibly_damaging(0.818) TCGA-2H-A9GH-01 19 50412739 50412739 G T NUP62 Missense_Mutation p.A109E 0.53 tolerated(0.11) possibly_damaging(0.462) TCGA-2H-A9GH-01 19 57022888 57022888 T G ZNF471 Intron 0.28 TCGA-2H-A9GH-01 19 6981138 6981138 G A EMR4P RNA 0.19 TCGA-2H-A9GH-01 19 8808742 8808742 C T ACTL9 Missense_Mutation p.V104M 0.78 tolerated(0.21) benign(0.01) TCGA-2H-A9GH-01 19 9083708 9083708 T G MUC16 Missense_Mutation p.S2703R 0.35 unknown(0) TCGA-2H-A9GH-01 1 152280800 152280800 T C FLG Missense_Mutation p.S2188G 0.28 benign(0.153) TCGA-2H-A9GH-01 1 152692541 152692541 C A C1orf68 Missense_Mutation p.P182T 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2H-A9GH-01 1 157514222 157514222 C T FCRL5 Missense_Mutation p.R225Q 0.41 tolerated(1) benign(0.002) TCGA-2H-A9GH-01 1 158549447 158549447 T G OR10X1 Silent p.A81A 0.41 TCGA-2H-A9GH-01 1 16343677 16343677 G C HSPB7 Missense_Mutation p.I75M 0.14 deleterious(0) probably_damaging(0.972) TCGA-2H-A9GH-01 1 167815044 167815044 C T ADCY10 Missense_Mutation p.E922K 0.25 tolerated(0.4) benign(0.012) TCGA-2H-A9GH-01 1 169768031 169768031 G C C1orf112 5'UTR 0.19 TCGA-2H-A9GH-01 1 196659305 196659305 A G CFH Silent p.K424K 0.56 TCGA-2H-A9GH-01 1 196758894 196758894 T G CFHR3 Intron 0.82 TCGA-2H-A9GH-01 1 225270265 225270265 G A DNAH14 Missense_Mutation p.D129N 0.32 tolerated(0.59) benign(0.021) TCGA-2H-A9GH-01 1 229771578 229771578 G A URB2 Silent p.P406P 0.27 TCGA-2H-A9GH-01 1 233749941 233749941 C T KCNK1 Silent p.S8S 0.27 TCGA-2H-A9GH-01 1 23689057 23689057 G A ZNF436 Missense_Mutation p.T273M 0.35 deleterious(0) probably_damaging(0.955) TCGA-2H-A9GH-01 1 246810502 246810502 G A CNST Silent p.L333L 0.49 TCGA-2H-A9GH-01 1 27425649 27425649 T C SLC9A1 3'UTR 0.38 TCGA-2H-A9GH-01 1 55569688 55569688 C G USP24 Missense_Mutation p.S1629T 0.29 tolerated(0.2) benign(0.035) TCGA-2H-A9GH-01 1 6324504 6324504 G A ACOT7 3'UTR 0.35 TCGA-2H-A9GH-01 1 65690447 65690447 G A AK4 Missense_Mutation p.V151I 0.25 tolerated(0.66) benign(0.001) TCGA-2H-A9GH-01 1 87108268 87108268 T A RP4-651E10.4 Intron 0.43 TCGA-2H-A9GH-01 20 2384435 2384435 C T TGM6 Silent p.R434R 0.26 TCGA-2H-A9GH-01 20 30512818 30512818 A G TTLL9 Missense_Mutation p.K224R 0.42 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GH-01 20 31671358 31671358 C T BPIFB4 Nonsense_Mutation p.R119* 0.25 TCGA-2H-A9GH-01 20 36869132 36869132 G - KIAA1755 Frame_Shift_Del p.T468Lfs*9 0.27 TCGA-2H-A9GH-01 20 44047496 44047496 G T PIGT Missense_Mutation p.D124Y 0.41 deleterious(0) probably_damaging(0.992) TCGA-2H-A9GH-01 20 62038490 62038490 G T KCNQ2 Missense_Mutation p.P709H 0.26 deleterious(0.01) benign(0.002) TCGA-2H-A9GH-01 21 28210407 28210407 A G ADAMTS1 Silent p.L799L 0.10 TCGA-2H-A9GH-01 21 38537977 38537977 C A TTC3 Missense_Mutation p.P1154H 0.28 tolerated(0.1) benign(0.195) TCGA-2H-A9GH-01 21 47406477 47406477 G T COL6A1 Missense_Mutation p.V156L 0.26 deleterious(0.04) unknown(0) TCGA-2H-A9GH-01 21 47635094 47635094 C G LSS Silent p.P337P 0.52 TCGA-2H-A9GH-01 22 42606752 42606752 C T TCF20 Silent p.T1520T 0.28 TCGA-2H-A9GH-01 2 125285014 125285014 C A CNTNAP5 Missense_Mutation p.L543M 0.18 tolerated(0.67) probably_damaging(0.995) TCGA-2H-A9GH-01 2 179988496 179988496 C A SESTD1 Nonsense_Mutation p.G410* 0.50 TCGA-2H-A9GH-01 2 183621088 183621088 C T DNAJC10 Silent p.N567N 0.13 TCGA-2H-A9GH-01 2 21224397 21224397 C T APOB 3'UTR 0.15 TCGA-2H-A9GH-01 2 227872864 227872864 C T COL4A4 Missense_Mutation p.R1560H 0.40 unknown(0) TCGA-2H-A9GH-01 2 228750092 228750092 T C DAW1 Silent p.H22H 0.17 TCGA-2H-A9GH-01 2 234627801 234627801 G C UGT1A4 Missense_Mutation p.R112T 0.17 tolerated(0.44) benign(0.005) TCGA-2H-A9GH-01 2 25463510 25463510 G A DNMT3A Silent p.Y724Y 0.12 TCGA-2H-A9GH-01 2 48742317 48742317 G A PPP1R21 3'UTR 0.67 TCGA-2H-A9GH-01 2 48809570 48809570 C T STON1-GTF2A1L Nonsense_Mutation p.R600* 0.51 TCGA-2H-A9GH-01 2 84897535 84897535 T C DNAH6 Silent p.T2130T 0.36 TCGA-2H-A9GH-01 3 100541483 100541483 C T ABI3BP Intron 0.31 TCGA-2H-A9GH-01 3 111719776 111719776 C T TAGLN3 Missense_Mutation p.T113M 0.24 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GH-01 3 122564698 122564698 A T DIRC2 Missense_Mutation p.T308S 0.37 tolerated(0.39) benign(0.032) TCGA-2H-A9GH-01 3 125286305 125286305 G A OSBPL11 Silent p.C267C 0.25 TCGA-2H-A9GH-01 3 130113738 130113738 C A COL6A5 Missense_Mutation p.H1000N 0.24 tolerated(0.83) benign(0) TCGA-2H-A9GH-01 3 137780897 137780897 A G DZIP1L 3'UTR 0.31 TCGA-2H-A9GH-01 3 158367801 158367801 C T GFM1 Intron 0.40 TCGA-2H-A9GH-01 3 170875251 170875251 C T TNIK Missense_Mutation p.E407K 0.16 deleterious(0.01) unknown(0) TCGA-2H-A9GH-01 3 193156843 193156843 C A ATP13A4 Missense_Mutation p.G844V 0.36 deleterious(0) probably_damaging(1) TCGA-2H-A9GH-01 3 47618986 47618986 A T CSPG5 Missense_Mutation p.L177Q 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2H-A9GH-01 3 51433513 51433513 G A VPRBP 3'UTR 0.27 TCGA-2H-A9GH-01 3 55717849 55717849 T G ERC2 3'UTR 0.17 TCGA-2H-A9GH-01 3 58108914 58108914 G T FLNB Missense_Mutation p.G1074V 0.50 deleterious(0.02) probably_damaging(1) TCGA-2H-A9GH-01 3 88039959 88039959 G T HTR1F Missense_Mutation p.M20I 0.36 tolerated(0.27) benign(0.001) TCGA-2H-A9GH-01 3 89448604 89448604 A G EPHA3 Missense_Mutation p.K523R 0.08 tolerated(0.39) benign(0.118) TCGA-2H-A9GH-01 4 100232043 100232043 C T ADH1B Missense_Mutation p.G328S 0.56 tolerated(1) benign(0) TCGA-2H-A9GH-01 4 169086462 169086462 C G ANXA10 Silent p.L155L 0.75 TCGA-2H-A9GH-01 4 177608420 177608420 C T VEGFC Missense_Mutation p.G356R 0.70 tolerated(0.25) benign(0.413) TCGA-2H-A9GH-01 4 47596318 47596318 T C CORIN 3'UTR 0.45 TCGA-2H-A9GH-01 4 55139789 55139789 G A PDGFRA Missense_Mutation p.V484M 0.63 tolerated(0.06) benign(0.014) TCGA-2H-A9GH-01 4 7780445 7780445 G A AFAP1 Intron 0.34 TCGA-2H-A9GH-01 4 85696071 85696071 A C WDFY3 Silent p.T1552T 0.58 TCGA-2H-A9GH-01 5 112399790 112399790 C A MCC Missense_Mutation p.A702S 0.33 tolerated(0.34) probably_damaging(0.993) TCGA-2H-A9GH-01 5 118506593 118506595 TTC - DMXL1 In_Frame_Del p.L2037del 0.20 TCGA-2H-A9GH-01 5 140221088 140221088 C T PCDHA8 Missense_Mutation p.P61L 0.48 deleterious_low_confidence(0) possibly_damaging(0.535) TCGA-2H-A9GH-01 5 140257282 140257282 C G PCDHA12 Missense_Mutation p.S742C 0.43 deleterious_low_confidence(0) benign(0.345) TCGA-2H-A9GH-01 5 140741034 140741034 C T PCDHGB2 Silent p.D444D 0.21 TCGA-2H-A9GH-01 5 161300175 161300175 A G GABRA1 Missense_Mutation p.K103R 0.09 tolerated(0.33) probably_damaging(0.989) TCGA-2H-A9GH-01 5 40691994 40691994 G A PTGER4 Nonsense_Mutation p.W327* 0.25 TCGA-2H-A9GH-01 5 40853005 40853005 A G CARD6 Missense_Mutation p.Q524R 0.15 tolerated(0.14) probably_damaging(0.922) TCGA-2H-A9GH-01 5 67594572 67594572 A G PIK3R1 3'UTR 0.31 TCGA-2H-A9GH-01 5 68805284 68805284 G A OCLN Missense_Mutation p.G123S 0.41 tolerated(0.11) probably_damaging(0.917) TCGA-2H-A9GH-01 5 9108359 9108359 A T SEMA5A Missense_Mutation p.W656R 0.08 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GH-01 6 161538151 161538151 C T MAP3K4 3'UTR 0.44 TCGA-2H-A9GH-01 6 31617061 31617061 G A BAG6 Missense_Mutation p.S113F 0.18 deleterious(0.03) benign(0.166) TCGA-2H-A9GH-01 6 46656366 46656366 C T TDRD6 Silent p.H167H 0.64 TCGA-2H-A9GH-01 6 72011406 72011406 A C OGFRL1 Missense_Mutation p.N337T 0.21 tolerated(0.18) benign(0.006) TCGA-2H-A9GH-01 6 96997405 96997405 C G UFL1 Missense_Mutation p.N546K 0.45 tolerated(0.27) benign(0.206) TCGA-2H-A9GH-01 6 97338905 97338905 T C NDUFAF4 3'UTR 0.41 TCGA-2H-A9GH-01 6 9933106 9933106 T C OFCC1 Silent p.A51A 0.35 TCGA-2H-A9GH-01 7 100173586 100173586 C T LRCH4 Missense_Mutation p.E562K 0.22 tolerated(0.09) probably_damaging(0.998) TCGA-2H-A9GH-01 7 108205425 108205425 G C THAP5 Missense_Mutation p.T133R 0.13 tolerated(0.16) benign(0.231) TCGA-2H-A9GH-01 7 11501765 11501765 A G THSD7A Missense_Mutation p.S792P 0.23 deleterious(0.03) benign(0.319) TCGA-2H-A9GH-01 7 149561418 149561418 C A ZNF862 3'UTR 0.74 TCGA-2H-A9GH-01 7 21856201 21856201 C T DNAH11 Silent p.A3490A 0.16 TCGA-2H-A9GH-01 7 24789377 24789377 G A DFNA5 Missense_Mutation p.T6I 0.20 deleterious(0) probably_damaging(1) TCGA-2H-A9GH-01 7 30197628 30197628 T G MTURN 3'UTR 0.22 TCGA-2H-A9GH-01 7 4119167 4119167 C T SDK1 Missense_Mutation p.P1092L 0.24 deleterious(0) possibly_damaging(0.816) TCGA-2H-A9GH-01 7 77269132 77269132 G - PTPN12 3'UTR 0.11 TCGA-2H-A9GH-01 7 86547820 86547820 C T KIAA1324L Missense_Mutation p.G511R 0.25 deleterious(0) possibly_damaging(0.9) TCGA-2H-A9GH-01 7 86988675 86988675 G A CROT Intron 0.28 TCGA-2H-A9GH-01 7 92762366 92762366 T G SAMD9L Missense_Mutation p.K973N 0.15 tolerated(0.49) benign(0.008) TCGA-2H-A9GH-01 7 99801705 99801705 G A STAG3 Missense_Mutation p.R921Q 0.19 deleterious(0) possibly_damaging(0.541) TCGA-2H-A9GH-01 8 105236014 105236014 A T RIMS2 Intron 0.25 TCGA-2H-A9GH-01 8 113347645 113347645 C G CSMD3 Missense_Mutation p.E2360Q 0.15 deleterious(0.02) probably_damaging(0.978) TCGA-2H-A9GH-01 8 25715895 25715895 A C EBF2 Missense_Mutation p.L490V 0.54 deleterious_low_confidence(0.02) probably_damaging(0.931) TCGA-2H-A9GH-01 8 75757681 75757681 G T PI15 Missense_Mutation p.W197L 0.48 deleterious(0) benign(0.341) TCGA-2H-A9GH-01 8 99466921 99466921 C T STK3 3'Flank 0.36 TCGA-2H-A9GH-01 9 124091567 124091567 G C GSN Missense_Mutation p.V698L 0.61 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GH-01 9 136215087 136215087 C T RPL7A 5'UTR 0.24 TCGA-2H-A9GH-01 X 106039546 106039547 AG - RNF128 3'UTR 0.40 TCGA-2H-A9GH-01 X 125298805 125298805 C A DCAF12L2 Missense_Mutation p.G368V 0.87 deleterious(0.03) possibly_damaging(0.45) TCGA-2H-A9GH-01 X 148074767 148074767 T G AFF2 3'UTR 0.78 TCGA-2H-A9GH-01 X 2406811 2406811 G A ZBED1 Silent p.N650N 0.75 TCGA-2H-A9GH-01 X 3002339 3002339 A T ARSF Silent p.P154P 0.14 TCGA-2H-A9GH-01 X 55041310 55041310 C T ALAS2 Missense_Mutation p.R436Q 0.66 tolerated(0.29) benign(0.014) TCGA-2H-A9GH-01 X 79700106 79700106 T G FAM46D 3'UTR 0.13 TCGA-2H-A9GH-01 X 83128496 83128496 T G CYLC1 Missense_Mutation p.N260K 0.11 tolerated(0.42) benign(0.096) TCGA-2H-A9GI-01 10 106907421 106907421 T C SORCS3 Missense_Mutation p.V450A 0.25 deleterious(0.03) probably_damaging(0.965) TCGA-2H-A9GI-01 10 117059700 117059700 T C ATRNL1 Silent p.L858L 0.28 TCGA-2H-A9GI-01 10 119308448 119308448 T G EMX2 3'UTR 0.42 TCGA-2H-A9GI-01 10 124358439 124358439 T C DMBT1 Missense_Mutation p.C1036R 0.39 deleterious(0) unknown(0) TCGA-2H-A9GI-01 10 132891331 132891331 G A TCERG1L 3'UTR 0.32 TCGA-2H-A9GI-01 10 42832819 42832819 G A RP11-313J2.1 RNA 0.67 TCGA-2H-A9GI-01 11 103092764 103092764 T G DYNC2H1 Missense_Mutation p.L3038R 0.44 probably_damaging(0.999) TCGA-2H-A9GI-01 11 111414699 111414699 A G LAYN Missense_Mutation p.Y54C 0.22 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 11 112126167 112126167 G T PLET1 Silent p.V110V 0.21 TCGA-2H-A9GI-01 11 115046750 115046750 A G CADM1 3'UTR 0.12 TCGA-2H-A9GI-01 11 21592442 21592442 A G NELL1 Missense_Mutation p.S705G 0.24 deleterious(0) possibly_damaging(0.898) TCGA-2H-A9GI-01 11 30439101 30439101 C T MPPED2 Missense_Mutation p.G206S 0.30 tolerated(0.16) benign(0.257) TCGA-2H-A9GI-01 11 30926625 30926625 T G DCDC1 Missense_Mutation p.Q1397H 0.58 tolerated(0.14) benign(0.387) TCGA-2H-A9GI-01 11 4790663 4790663 A C OR51F1 Missense_Mutation p.L162R 0.24 tolerated(0.12) probably_damaging(0.928) TCGA-2H-A9GI-01 11 48346846 48346846 T C OR4C3 Silent p.S118S 0.17 TCGA-2H-A9GI-01 11 49168407 49168407 T G FOLH1 Missense_Mutation p.K718N 0.22 tolerated(0.06) possibly_damaging(0.541) TCGA-2H-A9GI-01 11 55322171 55322171 T G OR4C15 Missense_Mutation p.I130S 0.20 tolerated_low_confidence(0.18) possibly_damaging(0.624) TCGA-2H-A9GI-01 11 55406320 55406320 T C OR4P4 Missense_Mutation p.F163L 0.30 tolerated(0.66) benign(0.013) TCGA-2H-A9GI-01 11 55418427 55418427 T C OR4S2 Silent p.S16S 0.74 TCGA-2H-A9GI-01 11 55595355 55595355 A C OR5L2 Missense_Mutation p.I221L 0.20 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GI-01 11 55703776 55703776 A G OR5I1 Missense_Mutation p.L34P 0.29 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GI-01 11 55905031 55905031 A C OR8J3 Missense_Mutation p.L55R 0.25 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GI-01 11 55999981 55999981 A G OR5T2 Silent p.S227S 0.39 TCGA-2H-A9GI-01 11 56020014 56020014 C A OR5T3 Silent p.V113V 0.25 TCGA-2H-A9GI-01 11 5626645 5626645 C T TRIM6 Missense_Mutation p.R228W 0.58 deleterious(0) benign(0.349) TCGA-2H-A9GI-01 11 63885044 63885044 C T FLRT1 Silent p.G435G 0.84 TCGA-2H-A9GI-01 11 64415728 64415728 G A NRXN2 Silent p.C1122C 0.25 TCGA-2H-A9GI-01 11 65389815 65389815 G A PCNXL3 Missense_Mutation p.A779T 0.33 tolerated(1) benign(0.052) TCGA-2H-A9GI-01 11 71817232 71817232 T G LRTOMT Missense_Mutation p.L112V 0.37 tolerated(0.11) probably_damaging(0.994) TCGA-2H-A9GI-01 11 76834840 76834840 A G CAPN5 Missense_Mutation p.N616S 0.44 tolerated(0.2) benign(0) TCGA-2H-A9GI-01 11 8248574 8248574 G A LMO1 Missense_Mutation p.R105W 0.25 deleterious(0) probably_damaging(0.958) TCGA-2H-A9GI-01 11 92531706 92531706 A T FAT3 Missense_Mutation p.T1843S 0.27 benign(0.347) TCGA-2H-A9GI-01 11 92600351 92600351 A G FAT3 Missense_Mutation p.S4035G 0.22 benign(0.028) TCGA-2H-A9GI-01 12 10342846 10342846 C A TMEM52B 3'UTR 0.35 TCGA-2H-A9GI-01 12 120589038 120589038 C A GCN1L1 Missense_Mutation p.G1407V 0.62 probably_damaging(1) TCGA-2H-A9GI-01 12 22199237 22199237 G A CMAS 5'UTR 0.27 TCGA-2H-A9GI-01 12 31242027 31242027 A T DDX11 Missense_Mutation p.E245V 0.23 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 12 40645048 40645048 T G LRRK2 Missense_Mutation p.L325V 0.16 tolerated(0.29) possibly_damaging(0.853) TCGA-2H-A9GI-01 12 49176989 49176989 C T ADCY6 Missense_Mutation p.G77S 0.25 tolerated(0.25) benign(0.007) TCGA-2H-A9GI-01 12 56557548 56557551 GTCT - SMARCC2 Splice_Site p.X1190_splice 0.38 TCGA-2H-A9GI-01 12 57587720 57587720 G A LRP1 Missense_Mutation p.G2615R 0.29 probably_damaging(0.951) TCGA-2H-A9GI-01 12 72388269 72388269 A C TPH2 Missense_Mutation p.K331T 0.36 tolerated(0.24) benign(0.287) TCGA-2H-A9GI-01 12 8927763 8927763 T C RIMKLB 3'UTR 0.28 TCGA-2H-A9GI-01 13 115067491 115067491 G A UPF3A Silent p.L431L 0.15 TCGA-2H-A9GI-01 13 19751310 19751310 G T TUBA3C Silent p.T271T 0.65 TCGA-2H-A9GI-01 13 23912160 23912160 A C SACS Missense_Mutation p.V1952G 0.60 possibly_damaging(0.541) TCGA-2H-A9GI-01 13 34013856 34013856 G C RP11-141M1.3 RNA 0.17 TCGA-2H-A9GI-01 13 36347572 36347572 T A DCLK1 3'UTR 0.36 TCGA-2H-A9GI-01 13 38137308 38137308 T A POSTN 3'UTR 0.15 TCGA-2H-A9GI-01 13 51594609 51594609 T G GUCY1B2 RNA 0.17 TCGA-2H-A9GI-01 13 67799672 67799672 G C PCDH9 Silent p.L967L 0.16 TCGA-2H-A9GI-01 14 101442866 101442866 G A SNORD114-19 RNA 0.50 TCGA-2H-A9GI-01 14 105270546 105270546 A G ZBTB42 3'UTR 0.14 TCGA-2H-A9GI-01 14 107095547 107095547 C A IGHV4-61 Missense_Mutation p.W5C 0.15 deleterious_low_confidence(0.05) probably_damaging(0.939) TCGA-2H-A9GI-01 14 107095548 107095548 C T IGHV4-61 Nonsense_Mutation p.W5* 0.14 TCGA-2H-A9GI-01 14 19378218 19378218 A T OR11H12 Nonsense_Mutation p.R209* 0.25 TCGA-2H-A9GI-01 14 23863430 23863430 G A MYH6 Silent p.S844S 0.25 TCGA-2H-A9GI-01 14 23890230 23890230 G A MYH7 Silent p.N1091N 0.56 TCGA-2H-A9GI-01 14 61179412 61179412 C T SIX4 3'UTR 0.15 TCGA-2H-A9GI-01 14 67843302 67843302 A T EIF2S1 Silent p.A156A 0.23 TCGA-2H-A9GI-01 14 72206004 72206004 G A SIPA1L1 3'UTR 0.10 TCGA-2H-A9GI-01 14 73006768 73006768 G A RGS6 Missense_Mutation p.R463H 0.50 tolerated(0.19) benign(0.005) TCGA-2H-A9GI-01 14 91360833 91360833 T C RPS6KA5 Missense_Mutation p.Y523C 0.23 tolerated(0.08) possibly_damaging(0.704) TCGA-2H-A9GI-01 15 23686609 23686609 C T GOLGA6L2 Missense_Mutation p.R338Q 0.23 benign(0.417) TCGA-2H-A9GI-01 15 24926238 24926238 T G NPAP1 3'UTR 0.15 TCGA-2H-A9GI-01 15 25959376 25959376 A C ATP10A Missense_Mutation p.F597V 0.22 tolerated(0.5) benign(0.102) TCGA-2H-A9GI-01 15 26790631 26790631 T C GABRB3 3'UTR 0.31 TCGA-2H-A9GI-01 15 33895328 33895328 C T RYR3 Missense_Mutation p.R643W 0.35 probably_damaging(0.999) TCGA-2H-A9GI-01 15 42192879 42192879 G A EHD4 Silent p.P530P 0.54 TCGA-2H-A9GI-01 15 43498658 43498658 C T EPB42 Silent p.T526T 0.09 TCGA-2H-A9GI-01 15 48495219 48495219 T C CTXN2 3'UTR 0.33 TCGA-2H-A9GI-01 15 69080148 69080148 G A ANP32A Silent p.T55T 0.17 TCGA-2H-A9GI-01 15 75705182 75705182 A G SIN3A Silent p.H226H 0.17 TCGA-2H-A9GI-01 15 75942122 75942122 C T SNX33 Missense_Mutation p.P227S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GI-01 15 81243701 81243702 AG TGGTA KIAA1199 3'UTR 0.14 TCGA-2H-A9GI-01 15 83806997 83806997 T C HDGFRP3 3'UTR 0.17 TCGA-2H-A9GI-01 15 85401174 85401174 C T ALPK3 Missense_Mutation p.L1271F 0.13 deleterious_low_confidence(0.02) benign(0.267) TCGA-2H-A9GI-01 16 2031151 2031151 C A NOXO1 Silent p.V10V 0.20 TCGA-2H-A9GI-01 16 20451237 20451237 G T ACSM5 Missense_Mutation p.R551M 0.20 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GI-01 16 23767039 23767039 A C CHP2 Missense_Mutation p.K42T 0.22 tolerated(0.48) benign(0.043) TCGA-2H-A9GI-01 16 24226461 24226461 C A PRKCB 3'UTR 0.27 TCGA-2H-A9GI-01 16 31408920 31408920 G A ITGAD Missense_Mutation p.R82H 0.26 deleterious(0.03) benign(0.001) TCGA-2H-A9GI-01 16 55733505 55733505 G A SLC6A2 Missense_Mutation p.G510E 0.23 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GI-01 16 55860155 55860155 G A CES1 Nonsense_Mutation p.R105* 0.17 TCGA-2H-A9GI-01 16 68104087 68104087 C G DUS2 Missense_Mutation p.A202G 0.16 deleterious(0.03) possibly_damaging(0.83) TCGA-2H-A9GI-01 16 71186629 71186629 C A HYDIN Silent p.L258L 0.82 TCGA-2H-A9GI-01 16 77918635 77918635 T G VAT1L Missense_Mutation p.L338R 0.24 deleterious(0) probably_damaging(0.987) TCGA-2H-A9GI-01 16 88945691 88945691 T G CBFA2T3 Missense_Mutation p.E550A 0.15 deleterious(0.04) possibly_damaging(0.776) TCGA-2H-A9GI-01 17 18082098 18082098 C T MYO15A Missense_Mutation p.R3503C 0.32 unknown(0) TCGA-2H-A9GI-01 17 34074129 34074129 G A GAS2L2 Nonsense_Mutation p.R331* 0.30 TCGA-2H-A9GI-01 17 37667841 37667841 G T CDK12 Missense_Mutation p.G909V 0.92 probably_damaging(1) TCGA-2H-A9GI-01 17 39879581 39879581 G A HAP1 3'UTR 0.11 TCGA-2H-A9GI-01 17 39879813 39879813 G A HAP1 3'UTR 0.12 TCGA-2H-A9GI-01 17 39879865 39879865 G C HAP1 3'UTR 0.10 TCGA-2H-A9GI-01 17 39879902 39879902 G A HAP1 3'UTR 0.10 TCGA-2H-A9GI-01 17 39911756 39911756 C A JUP 3'UTR 0.16 TCGA-2H-A9GI-01 17 40818933 40818933 C T TUBG2 3'UTR 0.31 TCGA-2H-A9GI-01 17 43333096 43333096 C T SPATA32 Silent p.A151A 0.23 TCGA-2H-A9GI-01 17 51900497 51900497 C T KIF2B Nonsense_Mutation p.Q35* 0.60 TCGA-2H-A9GI-01 17 51900805 51900805 C A KIF2B Missense_Mutation p.S137R 0.23 tolerated(0.06) possibly_damaging(0.779) TCGA-2H-A9GI-01 17 51901908 51901908 A G KIF2B Missense_Mutation p.D505G 0.32 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 17 5389414 5389414 G C DERL2 Missense_Mutation p.A23G 0.15 tolerated(0.16) benign(0.042) TCGA-2H-A9GI-01 17 58740749 58740749 C T PPM1D Nonsense_Mutation p.R552* 0.62 TCGA-2H-A9GI-01 17 649797 649797 T G GEMIN4 Missense_Mutation p.N496H 0.19 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 17 7322111 7322111 C T NLGN2 3'UTR 0.78 TCGA-2H-A9GI-01 18 24496546 24496546 A C CHST9 Missense_Mutation p.L337V 0.39 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GI-01 18 31599532 31599532 T C NOL4 Missense_Mutation p.E269G 0.38 tolerated(0.38) probably_damaging(0.997) TCGA-2H-A9GI-01 18 6995391 6995391 C T LAMA1 Missense_Mutation p.G1621S 0.39 tolerated(0.91) benign(0.014) TCGA-2H-A9GI-01 18 7010314 7010314 T G LAMA1 Missense_Mutation p.N1253T 0.48 tolerated(0.61) possibly_damaging(0.904) TCGA-2H-A9GI-01 18 70502512 70502512 A C NETO1 Intron 0.35 TCGA-2H-A9GI-01 19 10394884 10394884 G A ICAM1 Silent p.S271S 0.50 TCGA-2H-A9GI-01 19 11918536 11918536 G T ZNF491 3'UTR 0.35 TCGA-2H-A9GI-01 19 19613278 19613278 G A GATAD2A Missense_Mutation p.V572M 0.44 tolerated(0.25) benign(0.007) TCGA-2H-A9GI-01 19 20308762 20308762 T C ZNF486 Missense_Mutation p.Y415H 0.36 deleterious(0.01) possibly_damaging(0.69) TCGA-2H-A9GI-01 19 23329754 23329754 T C ZNF730 3'UTR 0.42 TCGA-2H-A9GI-01 19 23927700 23927700 T G ZNF681 Silent p.R218R 0.34 TCGA-2H-A9GI-01 19 33791297 33791322 ATCGGCTGATAAAGCAAAATATTTGG - CEBPA 3'UTR 0.24 TCGA-2H-A9GI-01 19 36122048 36122048 C G RBM42 Missense_Mutation p.Q97E 0.19 deleterious(0) possibly_damaging(0.751) TCGA-2H-A9GI-01 19 38126486 38126486 A C ZFP30 Missense_Mutation p.L319R 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GI-01 19 38315139 38315139 A C AC016582.2 RNA 0.32 TCGA-2H-A9GI-01 19 39899350 39899350 G A ZFP36 3'UTR 0.58 TCGA-2H-A9GI-01 19 51009321 51009321 G A JOSD2 3'UTR 0.28 TCGA-2H-A9GI-01 19 57641680 57641680 A C USP29 Missense_Mutation p.K546T 0.34 deleterious(0.01) probably_damaging(0.951) TCGA-2H-A9GI-01 19 7706941 7706941 G A STXBP2 Silent p.Q200Q 0.49 TCGA-2H-A9GI-01 19 9049753 9049753 A G MUC16 Silent p.S10626S 0.36 TCGA-2H-A9GI-01 19 9075786 9075786 T G MUC16 Missense_Mutation p.N3887T 0.38 unknown(0) TCGA-2H-A9GI-01 19 9213844 9213844 C T OR7G2 Missense_Mutation p.V47I 0.35 tolerated(0.17) benign(0.006) TCGA-2H-A9GI-01 1 138535 138535 A G AL627309.1 Silent p.L259L 0.37 TCGA-2H-A9GI-01 1 159409982 159409982 T G OR10J1 Missense_Mutation p.V145G 0.22 deleterious(0) benign(0.388) TCGA-2H-A9GI-01 1 17322367 17322368 - GCCA ATP13A2 Intron 0.18 TCGA-2H-A9GI-01 1 201374574 201374574 C T TNNI1 3'UTR 0.25 TCGA-2H-A9GI-01 1 213162230 213162230 T G VASH2 3'UTR 0.12 TCGA-2H-A9GI-01 1 225328714 225328714 A G DNAH14 Missense_Mutation p.E578G 0.14 deleterious(0.02) benign(0.273) TCGA-2H-A9GI-01 1 240601495 240601495 T G FMN2 Missense_Mutation p.L1682R 0.46 benign(0.035) TCGA-2H-A9GI-01 1 248458213 248458213 A C OR2T12 Missense_Mutation p.V223G 0.28 deleterious(0) probably_damaging(0.958) TCGA-2H-A9GI-01 1 44137265 44137265 G A KDM4A Missense_Mutation p.A485T 0.52 tolerated(0.3) probably_damaging(0.956) TCGA-2H-A9GI-01 1 8072486 8072486 C A ERRFI1 3'UTR 0.38 TCGA-2H-A9GI-01 20 23028837 23028837 G T THBD Missense_Mutation p.D435E 0.20 tolerated(1) benign(0.001) TCGA-2H-A9GI-01 20 23728462 23728462 T C CST1 Silent p.Q139Q 0.33 TCGA-2H-A9GI-01 20 3063287 3063287 C T AVP Missense_Mutation p.D162N 0.29 tolerated_low_confidence(0.31) benign(0.011) TCGA-2H-A9GI-01 20 44469672 44469672 G A SNX21 Missense_Mutation p.R281H 0.15 tolerated(0.77) benign(0.008) TCGA-2H-A9GI-01 20 44642095 44642095 C T MMP9 Missense_Mutation p.P511L 0.60 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GI-01 20 44669342 44669342 C G SLC12A5 Intron 0.22 TCGA-2H-A9GI-01 20 57251268 57251268 G A STX16 Missense_Mutation p.R300Q 0.44 deleterious(0.02) benign(0.023) TCGA-2H-A9GI-01 20 57289051 57289051 A G NPEPL1 Missense_Mutation p.R402G 0.49 deleterious(0) possibly_damaging(0.451) TCGA-2H-A9GI-01 20 60427897 60427897 C G CDH4 Missense_Mutation p.R274G 0.09 deleterious(0) probably_damaging(0.986) TCGA-2H-A9GI-01 20 60427900 60427900 C T CDH4 Missense_Mutation p.P275S 0.10 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 20 60427902 60427902 T C CDH4 Silent p.P275P 0.08 TCGA-2H-A9GI-01 20 61981091 61981091 G A CHRNA4 Silent p.L558L 0.04 TCGA-2H-A9GI-01 21 10862898 10862898 A T IGHV1OR21-1 Missense_Mutation p.E65V 0.21 deleterious(0.01) possibly_damaging(0.748) TCGA-2H-A9GI-01 21 15659985 15659985 A C ABCC13 RNA 0.44 TCGA-2H-A9GI-01 21 27107147 27107147 G T GABPA 5'UTR 0.50 TCGA-2H-A9GI-01 21 28208964 28208964 T G ADAMTS1 3'UTR 0.14 TCGA-2H-A9GI-01 21 34400325 34400325 G T OLIG2 3'UTR 0.30 TCGA-2H-A9GI-01 21 40800302 40800302 G A LCA5L Missense_Mutation p.R40W 0.28 tolerated(0.06) benign(0.023) TCGA-2H-A9GI-01 22 18310414 18310414 G A MICAL3 Silent p.S1063S 0.27 TCGA-2H-A9GI-01 22 26688607 26688607 G A SEZ6L Silent p.K110K 0.32 TCGA-2H-A9GI-01 22 29884949 29884949 C A NEFH Missense_Mutation p.S440R 0.40 tolerated(0.07) unknown(0) TCGA-2H-A9GI-01 22 32889259 32889259 G A FBXO7 Missense_Mutation p.D379N 0.33 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GI-01 22 38151139 38151139 G A TRIOBP Missense_Mutation p.R1840H 0.44 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GI-01 22 50942069 50942069 C T LMF2 Nonsense_Mutation p.W625* 0.29 TCGA-2H-A9GI-01 2 101654942 101654942 G T TBC1D8 Missense_Mutation p.T404N 0.57 tolerated(0.7) benign(0.001) TCGA-2H-A9GI-01 2 107040934 107040934 T G RGPD3 Missense_Mutation p.K1163N 0.18 deleterious(0) benign(0.359) TCGA-2H-A9GI-01 2 120194560 120194560 C T TMEM37 Silent p.V39V 0.27 TCGA-2H-A9GI-01 2 1271173 1271173 T C SNTG2 Silent p.L372L 0.17 TCGA-2H-A9GI-01 2 128699134 128699134 G C SAP130 3'UTR 0.11 TCGA-2H-A9GI-01 2 136567304 136567304 A C LCT Silent p.T871T 0.16 TCGA-2H-A9GI-01 2 141092037 141092037 A C LRP1B Missense_Mutation p.L4070V 0.17 possibly_damaging(0.694) TCGA-2H-A9GI-01 2 141232707 141232707 C T LRP1B Missense_Mutation p.V3209I 0.22 benign(0.097) TCGA-2H-A9GI-01 2 141250214 141250214 A C LRP1B Missense_Mutation p.I3028S 0.20 benign(0.227) TCGA-2H-A9GI-01 2 152362681 152362681 G A NEB Missense_Mutation p.S7883L 0.23 benign(0.166) TCGA-2H-A9GI-01 2 15358907 15358907 G A NBAS Missense_Mutation p.P2141L 0.20 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GI-01 2 165944973 165944973 C A SCN3A 3'UTR 0.34 TCGA-2H-A9GI-01 2 179402367 179402367 G A TTN Silent p.L33189L 0.29 TCGA-2H-A9GI-01 2 179412266 179412266 C T TTN Missense_Mutation p.V31363I 0.25 TCGA-2H-A9GI-01 2 179429645 179429645 C A TTN Nonsense_Mutation p.E27072* 0.21 TCGA-2H-A9GI-01 2 179472775 179472775 T G TTN Missense_Mutation p.D17580A 0.26 TCGA-2H-A9GI-01 2 179548772 179548772 T G TTN Missense_Mutation p.K10920N 0.20 TCGA-2H-A9GI-01 2 179614061 179614061 G T TTN Intron 0.23 TCGA-2H-A9GI-01 2 185803925 185803925 A C ZNF804A 3'UTR 0.35 TCGA-2H-A9GI-01 2 19552116 19552117 - GAAT OSR1 Frame_Shift_Ins p.C241Ifs*38 0.15 TCGA-2H-A9GI-01 2 197700510 197700510 T C PGAP1 3'UTR 0.38 TCGA-2H-A9GI-01 2 210704160 210704160 A C UNC80 Silent p.R1086R 0.26 TCGA-2H-A9GI-01 2 218925186 218925186 T A CXCR2P1 RNA 0.25 TCGA-2H-A9GI-01 2 219227598 219227598 C T C2orf62 Silent p.T201T 0.20 TCGA-2H-A9GI-01 2 231684959 231684959 G A CAB39 3'UTR 0.50 TCGA-2H-A9GI-01 2 233404837 233404837 C T CHRNG Missense_Mutation p.S64F 0.30 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GI-01 2 26502881 26502881 A G HADHB Silent p.K277K 0.29 TCGA-2H-A9GI-01 2 29451833 29451833 T C ALK Missense_Mutation p.K911R 0.22 tolerated(0.11) probably_damaging(0.995) TCGA-2H-A9GI-01 2 31457626 31457626 T C EHD3 Missense_Mutation p.S47P 0.24 deleterious(0) probably_damaging(0.984) TCGA-2H-A9GI-01 2 31598302 31598302 A C XDH Missense_Mutation p.F516V 0.17 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 2 68607874 68607874 C T PLEK Missense_Mutation p.T73M 0.20 deleterious(0.04) possibly_damaging(0.779) TCGA-2H-A9GI-01 2 80646693 80646693 A G CTNNA2 Silent p.Q419Q 0.26 TCGA-2H-A9GI-01 2 85553696 85553696 C A TGOLN2 Missense_Mutation p.A387S 0.39 deleterious(0) possibly_damaging(0.866) TCGA-2H-A9GI-01 2 89104066 89104066 T G ANKRD36BP2 RNA 0.21 TCGA-2H-A9GI-01 2 89266048 89266048 C T IGKV1-6 Silent p.Q28Q 0.26 TCGA-2H-A9GI-01 2 90077801 90077801 T A IGKV3D-20 Missense_Mutation p.F9I 0.73 tolerated(0.41) benign(0.23) TCGA-2H-A9GI-01 2 9583646 9583646 C G CPSF3 Missense_Mutation p.H366Q 0.21 tolerated(0.88) benign(0.002) TCGA-2H-A9GI-01 2 9695818 9695818 A C ADAM17 5'UTR 0.22 TCGA-2H-A9GI-01 3 100039744 100039744 A C TBC1D23 Missense_Mutation p.K649N 0.19 deleterious(0.01) benign(0.345) TCGA-2H-A9GI-01 3 10127509 10127509 C G FANCD2 Missense_Mutation p.Q1080E 0.40 tolerated(0.13) benign(0.012) TCGA-2H-A9GI-01 3 114057910 114057910 T G ZBTB20 Missense_Mutation p.K723T 0.19 tolerated_low_confidence(0.06) probably_damaging(0.982) TCGA-2H-A9GI-01 3 124632422 124632423 - CTCT MUC13 Frame_Shift_Ins p.S356Rfs*14 0.20 TCGA-2H-A9GI-01 3 130188262 130188262 A C COL6A5 Missense_Mutation p.T2472P 0.29 deleterious(0) possibly_damaging(0.616) TCGA-2H-A9GI-01 3 13429848 13429848 G A NUP210 Silent p.T213T 0.38 TCGA-2H-A9GI-01 3 147657892 147657892 A G RP11-71N10.1 RNA 0.25 TCGA-2H-A9GI-01 3 152553640 152553640 G A P2RY1 Silent p.S23S 0.62 TCGA-2H-A9GI-01 3 152881346 152881346 C T RAP2B 3'UTR 0.24 TCGA-2H-A9GI-01 3 15765924 15765924 T C ANKRD28 Missense_Mutation p.S220G 0.36 tolerated(0.13) benign(0.044) TCGA-2H-A9GI-01 3 16419421 16419421 C T RFTN1 Silent p.V210V 0.20 TCGA-2H-A9GI-01 3 182584151 182584151 G A ATP11B Nonsense_Mutation p.W513* 0.64 TCGA-2H-A9GI-01 3 184005669 184005669 C T ECE2 Silent p.D554D 0.31 TCGA-2H-A9GI-01 3 195509608 195509608 G A MUC4 Missense_Mutation p.T2948I 0.28 benign(0.001) TCGA-2H-A9GI-01 3 28380096 28380096 C T AZI2 Missense_Mutation p.R76Q 0.24 tolerated(0.21) benign(0.003) TCGA-2H-A9GI-01 3 31203216 31203216 C T hsa-mir-466 RNA 0.17 TCGA-2H-A9GI-01 3 38783782 38783782 G A SCN10A Silent p.I702I 0.27 TCGA-2H-A9GI-01 3 39229334 39229334 G A XIRP1 Missense_Mutation p.R535W 0.22 deleterious(0) probably_damaging(0.981) TCGA-2H-A9GI-01 3 48690521 48690521 C T CELSR3 Missense_Mutation p.D1850N 0.31 tolerated(0.27) probably_damaging(1) TCGA-2H-A9GI-01 3 50401381 50401381 G A CACNA2D2 3'Flank 0.29 TCGA-2H-A9GI-01 3 55543118 55543118 T G ERC2 3'UTR 0.29 TCGA-2H-A9GI-01 3 62359009 62359009 G C FEZF2 5'UTR 0.35 TCGA-2H-A9GI-01 3 62384995 62384995 G T CADPS 3'UTR 0.19 TCGA-2H-A9GI-01 3 64599178 64599178 A C ADAMTS9 Missense_Mutation p.V1066G 0.38 deleterious(0.01) probably_damaging(0.997) TCGA-2H-A9GI-01 3 98475373 98475373 T C ST3GAL6 5'UTR 0.29 TCGA-2H-A9GI-01 4 118975271 118975271 A G NDST3 Missense_Mutation p.K69R 0.28 tolerated(0.26) benign(0.002) TCGA-2H-A9GI-01 4 126411358 126411358 A G FAT4 Missense_Mutation p.T4461A 0.43 benign(0.08) TCGA-2H-A9GI-01 4 16504699 16504699 C T LDB2 Intron 0.38 TCGA-2H-A9GI-01 4 166418827 166418827 T G CPE 3'UTR 0.36 TCGA-2H-A9GI-01 4 20569203 20569203 T C SLIT2 Silent p.T971T 0.33 TCGA-2H-A9GI-01 4 3418674 3418674 G A RGS12 Missense_Mutation p.R821H 0.28 deleterious(0) probably_damaging(0.95) TCGA-2H-A9GI-01 4 37440633 37440644 TTCCTACTATTG - KIAA1239 In_Frame_Del p.P307_V310del 0.35 TCGA-2H-A9GI-01 4 41746680 41746680 C T PHOX2B 3'UTR 0.33 TCGA-2H-A9GI-01 4 46043126 46043126 G T GABRG1 Missense_Mutation p.S426Y 0.28 deleterious(0.01) possibly_damaging(0.822) TCGA-2H-A9GI-01 4 6588829 6588829 G A MAN2B2 Silent p.A166A 0.24 TCGA-2H-A9GI-01 4 69100186 69100186 A G TMPRSS11B Missense_Mutation p.L155P 0.20 deleterious(0) possibly_damaging(0.819) TCGA-2H-A9GI-01 4 73147079 73147079 A C ADAMTS3 3'UTR 0.38 TCGA-2H-A9GI-01 4 80246474 80246474 A C NAA11 Silent p.S186S 0.32 TCGA-2H-A9GI-01 5 139422014 139422015 - G NRG2 Frame_Shift_Ins p.L214Pfs*19 0.34 TCGA-2H-A9GI-01 5 140615746 140615746 G A PCDHB18 RNA 0.32 TCGA-2H-A9GI-01 5 161117260 161117260 T G GABRA6 Missense_Mutation p.F243V 0.35 deleterious(0.03) probably_damaging(0.985) TCGA-2H-A9GI-01 5 172562325 172562325 C T CREBRF 3'UTR 0.30 TCGA-2H-A9GI-01 5 174151613 174151613 C T MSX2 5'UTR 0.29 TCGA-2H-A9GI-01 5 19721575 19721575 C T CDH18 Missense_Mutation p.G175D 0.17 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GI-01 5 31318054 31318054 C A CDH6 Intron 0.31 TCGA-2H-A9GI-01 5 3600784 3600784 G T IRX1 Silent p.P458P 0.47 TCGA-2H-A9GI-01 5 36608463 36608463 C T SLC1A3 5'UTR 0.26 TCGA-2H-A9GI-01 5 58269856 58269857 - T PDE4D 3'UTR 0.43 TCGA-2H-A9GI-01 5 80762872 80762872 A T SSBP2 Intron 0.32 TCGA-2H-A9GI-01 5 90041004 90041004 A C GPR98 Missense_Mutation p.N3564T 0.31 possibly_damaging(0.727) TCGA-2H-A9GI-01 5 93800647 93800647 C T KIAA0825 Missense_Mutation p.E664K 0.37 deleterious(0.03) probably_damaging(0.972) TCGA-2H-A9GI-01 6 102134068 102134068 T G GRIK2 Missense_Mutation p.L264R 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-2H-A9GI-01 6 117632255 117632255 A C ROS1 Missense_Mutation p.V2054G 0.09 tolerated(0.14) benign(0.345) TCGA-2H-A9GI-01 6 127652116 127652116 G C ECHDC1 Missense_Mutation p.Q26E 0.12 deleterious_low_confidence(0.02) benign(0.103) TCGA-2H-A9GI-01 6 128321471 128321471 T A PTPRK Intron 0.25 TCGA-2H-A9GI-01 6 128321472 128321472 C T PTPRK Intron 0.23 TCGA-2H-A9GI-01 6 144033170 144033170 G - PHACTR2 Frame_Shift_Del p.A22Lfs*3 0.16 TCGA-2H-A9GI-01 6 146720714 146720714 C T GRM1 Missense_Mutation p.R847C 0.22 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 6 152765647 152765647 C T SYNE1 Missense_Mutation p.E1246K 0.36 benign(0.027) TCGA-2H-A9GI-01 6 22287671 22287671 T C PRL Missense_Mutation p.K215R 0.17 deleterious(0.03) probably_damaging(0.989) TCGA-2H-A9GI-01 6 24433598 24433598 G T GPLD1 Missense_Mutation p.S793Y 0.55 deleterious(0.03) possibly_damaging(0.907) TCGA-2H-A9GI-01 6 24780905 24780905 A G GMNN Silent p.P22P 0.10 TCGA-2H-A9GI-01 6 27834947 27834947 G A HIST1H1B Missense_Mutation p.P121S 0.20 tolerated(0.3) unknown(0) TCGA-2H-A9GI-01 6 29054257 29054257 A C OR2B3 Missense_Mutation p.Y257D 0.54 deleterious(0.01) possibly_damaging(0.876) TCGA-2H-A9GI-01 6 33380096 33380097 - T PHF1 Frame_Shift_Ins p.S20Ffs*24 0.12 TCGA-2H-A9GI-01 6 34003813 34003813 G A GRM4 Missense_Mutation p.R692C 0.36 deleterious(0) probably_damaging(0.94) TCGA-2H-A9GI-01 6 53516583 53516583 C T KLHL31 Nonsense_Mutation p.W573* 0.67 TCGA-2H-A9GI-01 6 7585192 7585192 G A DSP Missense_Mutation p.G2566D 0.18 probably_damaging(1) TCGA-2H-A9GI-01 7 117358157 117358157 T C CTTNBP2 Missense_Mutation p.D1554G 0.38 deleterious(0.04) benign(0.371) TCGA-2H-A9GI-01 7 138279284 138279285 - A SVOPL 3'Flank 0.24 TCGA-2H-A9GI-01 7 143140667 143140667 C T TAS2R60 Missense_Mutation p.A41V 0.46 tolerated(0.84) benign(0.015) TCGA-2H-A9GI-01 7 150163774 150163774 G C GIMAP8 5'UTR 0.12 TCGA-2H-A9GI-01 7 35244122 35244122 T G TBX20 Missense_Mutation p.E321D 0.52 tolerated(0.47) benign(0) TCGA-2H-A9GI-01 7 37924817 37924817 A C NME8 Silent p.R404R 0.21 TCGA-2H-A9GI-01 7 42004239 42004239 C T GLI3 Missense_Mutation p.E1478K 0.38 tolerated(0.15) benign(0.063) TCGA-2H-A9GI-01 7 6196639 6196639 G A USP42 Missense_Mutation p.R1299Q 0.33 tolerated(0.06) benign(0.018) TCGA-2H-A9GI-01 7 76240862 76240862 T A POMZP3 Nonsense_Mutation p.K162* 0.29 TCGA-2H-A9GI-01 7 82584392 82584392 A C PCLO Silent p.S1959S 0.36 TCGA-2H-A9GI-01 8 104924382 104924382 A G RIMS2 Silent p.G598G 0.33 TCGA-2H-A9GI-01 8 105235954 105235954 G T RIMS2 Intron 0.29 TCGA-2H-A9GI-01 8 106813335 106813335 A C ZFPM2 Missense_Mutation p.Y342S 0.16 tolerated(0.17) possibly_damaging(0.894) TCGA-2H-A9GI-01 8 116426999 116426999 T G TRPS1 Missense_Mutation p.Q1046P 0.22 tolerated_low_confidence(0.71) possibly_damaging(0.635) TCGA-2H-A9GI-01 8 12957567 12957567 G A DLC1 Missense_Mutation p.T760M 0.20 deleterious(0.02) probably_damaging(0.953) TCGA-2H-A9GI-01 8 134251058 134251058 G A NDRG1 3'UTR 0.21 TCGA-2H-A9GI-01 8 136619224 136619224 T C KHDRBS3 Silent p.A278A 0.43 TCGA-2H-A9GI-01 8 139143752 139143752 C T FAM135B 3'UTR 0.58 TCGA-2H-A9GI-01 8 145979173 145979174 - A ZNF251 Frame_Shift_Ins p.V58Cfs*3 0.12 TCGA-2H-A9GI-01 8 2046716 2046716 C A MYOM2 Nonsense_Mutation p.Y781* 0.51 TCGA-2H-A9GI-01 8 25360941 25360942 - ATCTTTAT CDCA2 Frame_Shift_Ins p.G579Lfs*27 0.14 TCGA-2H-A9GI-01 8 2813255 2813255 C T CSMD1 Missense_Mutation p.A3284T 0.26 benign(0.024) TCGA-2H-A9GI-01 8 32617883 32617883 A G NRG1 Silent p.R414R 0.46 TCGA-2H-A9GI-01 8 57224771 57224771 C G SDR16C5 Missense_Mutation p.C137S 0.60 tolerated(0.4) possibly_damaging(0.515) TCGA-2H-A9GI-01 8 68930087 68930087 T C PREX2 Silent p.L50L 0.25 TCGA-2H-A9GI-01 8 77617713 77617713 A G ZFHX4 Missense_Mutation p.S464G 0.18 benign(0.294) TCGA-2H-A9GI-01 8 85774617 85774617 G A RALYL Missense_Mutation p.R180H 0.17 deleterious(0.04) benign(0.428) TCGA-2H-A9GI-01 8 86393469 86393469 A G CA2 3'UTR 0.38 TCGA-2H-A9GI-01 8 88885764 88885764 A G DCAF4L2 Missense_Mutation p.F146L 0.18 tolerated(1) benign(0.001) TCGA-2H-A9GI-01 9 102691114 102691114 C T STX17 Missense_Mutation p.R60C 0.43 deleterious(0) probably_damaging(0.987) TCGA-2H-A9GI-01 9 103035315 103035315 C A INVS Missense_Mutation p.L581I 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-2H-A9GI-01 9 117826297 117826297 C A TNC Missense_Mutation p.A1180S 0.17 tolerated(1) benign(0.086) TCGA-2H-A9GI-01 9 121930039 121930039 A C BRINP1 Missense_Mutation p.F537V 0.21 tolerated(0.28) benign(0.027) TCGA-2H-A9GI-01 9 121930218 121930218 A C BRINP1 Missense_Mutation p.F477C 0.52 deleterious(0) benign(0.439) TCGA-2H-A9GI-01 9 140773593 140773593 G A CACNA1B Silent p.T124T 0.27 TCGA-2H-A9GI-01 9 39171488 39171488 G C CNTNAP3 Missense_Mutation p.A404G 0.15 tolerated(0.36) benign(0.104) TCGA-2H-A9GI-01 X 110544065 110544065 A G DCX 3'UTR 0.41 TCGA-2H-A9GI-01 X 113865309 113865309 A G HTR2C Intron 0.46 TCGA-2H-A9GI-01 X 134992321 134992321 G A SAGE1 Missense_Mutation p.R619K 0.39 deleterious(0) probably_damaging(0.937) TCGA-2H-A9GI-01 X 140985396 140985396 T G MAGEC3 Intron 0.44 TCGA-2H-A9GI-01 X 142718596 142718596 T G SLITRK4 Missense_Mutation p.K110T 0.45 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GI-01 X 2773102 2773102 G A GYG2 Silent p.P162P 0.62 TCGA-2H-A9GI-01 X 73062940 73062940 A C XIST RNA 0.22 TCGA-2H-A9GI-01 X 75650295 75650295 A G MAGEE1 Missense_Mutation p.R658G 0.29 deleterious(0) probably_damaging(1) TCGA-2H-A9GI-01 X 77912333 77912333 T A ZCCHC5 3'UTR 0.78 TCGA-2H-A9GI-01 X 99546976 99546976 A C PCDH19 3'UTR 0.62 TCGA-2H-A9GI-01 Y 16936229 16936229 T A NLGN4Y Missense_Mutation p.L263M 0.56 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GJ-01 10 129676619 129676619 C G CLRN3 Missense_Mutation p.E159Q 0.44 tolerated(0.15) benign(0.042) TCGA-2H-A9GJ-01 10 133786618 133786618 G A BNIP3 Missense_Mutation p.P68S 0.29 deleterious(0.04) possibly_damaging(0.893) TCGA-2H-A9GJ-01 10 17646033 17646033 C G PTPLA Missense_Mutation p.A91P 0.20 tolerated(0.1) benign(0.016) TCGA-2H-A9GJ-01 10 33018340 33018340 G T C10ORF68 Nonsense_Mutation p.E261* 0.23 TCGA-2H-A9GJ-01 10 68138918 68138918 G A CTNNA3 Missense_Mutation p.T575I 0.20 tolerated(0.05) unknown(0) TCGA-2H-A9GJ-01 11 103908640 103908640 G T DDI1 Nonsense_Mutation p.G364* 0.51 TCGA-2H-A9GJ-01 11 111749915 111749915 C - FDXACB1 5'Flank 0.33 TCGA-2H-A9GJ-01 11 20177891 20177891 G A DBX1 Missense_Mutation p.R340W 0.33 deleterious(0) possibly_damaging(0.899) TCGA-2H-A9GJ-01 11 5809305 5809305 A T OR52N1 Missense_Mutation p.C248S 0.71 tolerated(0.11) benign(0.032) TCGA-2H-A9GJ-01 11 67174340 67174340 C T TBC1D10C Missense_Mutation p.R231W 0.07 deleterious(0) probably_damaging(0.981) TCGA-2H-A9GJ-01 11 70803610 70803610 G A SHANK2 Missense_Mutation p.P257L 0.45 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GJ-01 12 104519904 104519904 A C NFYB Silent p.P73P 0.33 TCGA-2H-A9GJ-01 12 40917019 40917019 G T MUC19 Intron 0.56 TCGA-2H-A9GJ-01 12 45173759 45173759 G T NELL2 Missense_Mutation p.H178N 0.75 deleterious(0) possibly_damaging(0.749) TCGA-2H-A9GJ-01 12 45173789 45173789 T A NELL2 Missense_Mutation p.S168C 0.32 deleterious(0) probably_damaging(0.963) TCGA-2H-A9GJ-01 12 52642618 52642618 C T KRT7 3'UTR 0.27 TCGA-2H-A9GJ-01 12 6635321 6635321 C T NCAPD2 Silent p.A812A 0.78 TCGA-2H-A9GJ-01 12 70150282 70150282 G C RAB3IP Missense_Mutation p.E133Q 0.46 deleterious_low_confidence(0.02) benign(0.04) TCGA-2H-A9GJ-01 12 73046867 73046867 C T TRHDE Missense_Mutation p.A927V 0.23 deleterious(0.01) possibly_damaging(0.782) TCGA-2H-A9GJ-01 13 103459544 103459544 G C BIVM 5'UTR 0.22 TCGA-2H-A9GJ-01 13 25453361 25453361 G A RNF17 Missense_Mutation p.D1604N 0.33 deleterious(0) benign(0.001) TCGA-2H-A9GJ-01 14 105242111 105242111 T C AKT1 Missense_Mutation p.T105A 0.37 tolerated(0.97) benign(0.002) TCGA-2H-A9GJ-01 14 106950481 106950481 A C LINC00221 RNA 0.33 TCGA-2H-A9GJ-01 14 24423052 24423052 A T DHRS4 Missense_Mutation p.M19L 0.05 tolerated(0.27) benign(0.001) TCGA-2H-A9GJ-01 14 24423088 24423088 G A DHRS4 Missense_Mutation p.A31T 0.11 tolerated(0.19) benign(0.001) TCGA-2H-A9GJ-01 14 29237611 29237611 A G FOXG1 Missense_Mutation p.T376A 0.34 tolerated(0.1) benign(0.009) TCGA-2H-A9GJ-01 14 38208059 38208059 A G TTC6 Missense_Mutation p.I688V 0.31 tolerated(0.09) benign(0.004) TCGA-2H-A9GJ-01 14 59835509 59835509 C T DAAM1 Missense_Mutation p.R1057C 0.45 deleterious(0) probably_damaging(0.995) TCGA-2H-A9GJ-01 14 64938709 64938710 - C AKAP5 3'UTR 0.33 TCGA-2H-A9GJ-01 14 93650312 93650312 G A MOAP1 Silent p.I92I 0.38 TCGA-2H-A9GJ-01 15 29346720 29346720 C A APBA2 Silent p.R211R 0.21 TCGA-2H-A9GJ-01 15 41289774 41289774 T G INO80 Missense_Mutation p.S1175R 0.37 deleterious(0) probably_damaging(1) TCGA-2H-A9GJ-01 15 48494429 48494429 G T CTXN2 3'UTR 0.30 TCGA-2H-A9GJ-01 15 49293250 49293250 G A SECISBP2L Missense_Mutation p.T691I 0.42 deleterious(0.02) probably_damaging(0.999) TCGA-2H-A9GJ-01 15 56032808 56032808 C T PRTG Missense_Mutation p.V57I 0.09 tolerated(0.31) benign(0.021) TCGA-2H-A9GJ-01 15 57578620 57578623 CAAT - TCF12 3'UTR 0.66 TCGA-2H-A9GJ-01 15 57579937 57579937 A G TCF12 3'UTR 0.28 TCGA-2H-A9GJ-01 15 63063221 63063221 C A TLN2 Missense_Mutation p.S1752Y 0.15 deleterious(0) probably_damaging(0.971) TCGA-2H-A9GJ-01 15 75759599 75759601 AAT - PTPN9 3'UTR 0.39 TCGA-2H-A9GJ-01 15 79082078 79082078 G T ADAMTS7 Missense_Mutation p.D377E 0.45 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GJ-01 15 90610668 90610668 G A ZNF710 Missense_Mutation p.R100Q 0.35 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-2H-A9GJ-01 16 20548600 20548600 C T ACSM2B Missense_Mutation p.G572R 0.25 tolerated(0.24) benign(0.012) TCGA-2H-A9GJ-01 16 3085278 3085278 G A CCDC64B Nonsense_Mutation p.R74* 0.82 TCGA-2H-A9GJ-01 16 53504680 53504680 G A RBL2 Missense_Mutation p.R850H 0.31 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GJ-01 16 74943477 74943477 C T WDR59 Missense_Mutation p.V522M 0.65 deleterious(0.03) possibly_damaging(0.781) TCGA-2H-A9GJ-01 16 85009325 85009334 GCACACACGC - ZDHHC7 3'Flank 0.33 TCGA-2H-A9GJ-01 16 89334199 89334199 C - ANKRD11 3'UTR 0.12 TCGA-2H-A9GJ-01 17 38421089 38421089 C T WIPF2 Nonsense_Mutation p.R221* 0.29 TCGA-2H-A9GJ-01 17 47374979 47374979 C G ZNF652 3'UTR 0.25 TCGA-2H-A9GJ-01 17 47375058 47375058 C A ZNF652 3'UTR 0.20 TCGA-2H-A9GJ-01 17 47375199 47375199 C G ZNF652 3'UTR 0.12 TCGA-2H-A9GJ-01 17 6915916 6915916 C T RNASEK Missense_Mutation p.L11F 0.50 tolerated_low_confidence(0.07) benign(0.046) TCGA-2H-A9GJ-01 17 7578517 7578517 G A TP53 Missense_Mutation p.A138V 0.75 deleterious(0.03) possibly_damaging(0.644) TCGA-2H-A9GJ-01 18 2554995 2554995 C T METTL4 Missense_Mutation p.E168K 0.27 deleterious(0.04) benign(0.056) TCGA-2H-A9GJ-01 19 11132405 11132405 G A SMARCA4 Missense_Mutation p.R874H 0.11 probably_damaging(0.986) TCGA-2H-A9GJ-01 19 17346329 17346329 C T NR2F6 Missense_Mutation p.A307T 0.44 deleterious(0) possibly_damaging(0.845) TCGA-2H-A9GJ-01 19 30935725 30935725 C A ZNF536 Missense_Mutation p.S419Y 0.06 deleterious(0.01) possibly_damaging(0.486) TCGA-2H-A9GJ-01 19 38385506 38385506 G A WDR87 Silent p.F240F 0.05 TCGA-2H-A9GJ-01 19 38609988 38609988 C T SIPA1L3 Silent p.P778P 0.13 TCGA-2H-A9GJ-01 19 39226939 39226939 G A CAPN12 Missense_Mutation p.S465F 0.32 tolerated(0.06) possibly_damaging(0.58) TCGA-2H-A9GJ-01 19 40580101 40580101 C T ZNF780A 3'UTR 0.28 TCGA-2H-A9GJ-01 19 44891312 44891312 T C ZNF285 Silent p.V365V 0.28 TCGA-2H-A9GJ-01 19 45976489 45976489 G A FOSB 3'UTR 0.18 TCGA-2H-A9GJ-01 19 49183544 49183544 C T RN7SL345P 5'Flank 0.28 TCGA-2H-A9GJ-01 19 50464118 50464118 T C SIGLEC11 Missense_Mutation p.I51V 0.19 tolerated(0.63) benign(0.002) TCGA-2H-A9GJ-01 19 53473813 53473813 G A ZNF702P RNA 0.06 TCGA-2H-A9GJ-01 19 58982373 58982373 G A ZNF324 Missense_Mutation p.V172I 0.06 tolerated(0.2) benign(0) TCGA-2H-A9GJ-01 19 7914023 7914023 G A EVI5L Missense_Mutation p.V182I 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-2H-A9GJ-01 19 8564218 8564218 C T PRAM1 Silent p.P158P 0.44 TCGA-2H-A9GJ-01 19 9049462 9049462 A G MUC16 Silent p.A10723A 0.40 TCGA-2H-A9GJ-01 1 114443011 114443011 A T AP4B1 Missense_Mutation p.L210Q 0.12 deleterious(0.03) probably_damaging(0.992) TCGA-2H-A9GJ-01 1 152188168 152188168 T A HRNR Silent p.P1979P 0.06 TCGA-2H-A9GJ-01 1 152278979 152278979 C T FLG Missense_Mutation p.G2795R 0.23 possibly_damaging(0.584) TCGA-2H-A9GJ-01 1 152749064 152749064 G A LCE1F Missense_Mutation p.G73S 0.04 deleterious_low_confidence(0) unknown(0) TCGA-2H-A9GJ-01 1 154988714 154988714 C - ZBTB7B Frame_Shift_Del p.H426Tfs*107 0.24 TCGA-2H-A9GJ-01 1 158617433 158617433 T C SPTA1 Silent p.K1264K 0.24 TCGA-2H-A9GJ-01 1 160718031 160718031 G A SLAMF7 Missense_Mutation p.G35R 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-2H-A9GJ-01 1 17735381 17735381 A G RCC2 3'UTR 0.15 TCGA-2H-A9GJ-01 1 200818158 200818158 G C CAMSAP2 Missense_Mutation p.R754T 0.61 deleterious(0.01) possibly_damaging(0.777) TCGA-2H-A9GJ-01 1 217793695 217793695 C G GPATCH2 Missense_Mutation p.R68T 0.45 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GJ-01 1 225539568 225539568 C A DNAH14 Missense_Mutation p.T2943K 0.41 tolerated_low_confidence(0.14) benign(0) TCGA-2H-A9GJ-01 1 228467602 228467602 C T OBSCN Missense_Mutation p.R2922W 0.47 probably_damaging(0.975) TCGA-2H-A9GJ-01 1 29070268 29070268 G A YTHDF2 Missense_Mutation p.D496N 0.28 tolerated(0.06) benign(0.275) TCGA-2H-A9GJ-01 1 40362389 40362389 C A MYCL 3'UTR 0.38 TCGA-2H-A9GJ-01 1 86909573 86909573 A G CLCA2 Missense_Mutation p.Q531R 0.43 tolerated(0.28) possibly_damaging(0.872) TCGA-2H-A9GJ-01 1 89849781 89849781 A C GBP6 Missense_Mutation p.K533T 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-2H-A9GJ-01 1 9787316 9787316 C T PIK3CD 3'UTR 0.07 TCGA-2H-A9GJ-01 20 21686334 21686334 G A PAX1 5'UTR 0.46 TCGA-2H-A9GJ-01 20 3129047 3129047 T C FASTKD5 Missense_Mutation p.M224V 0.18 tolerated(0.18) benign(0.002) TCGA-2H-A9GJ-01 20 4706814 4706814 A C PRND 3'UTR 0.30 TCGA-2H-A9GJ-01 20 57564664 57564664 A C NELFCD Missense_Mutation p.E227A 0.19 deleterious(0.03) benign(0.011) TCGA-2H-A9GJ-01 20 5958593 5958593 A C MCM8 Silent p.V489V 0.38 TCGA-2H-A9GJ-01 20 62642820 62642820 C A PRPF6 Silent p.A496A 0.33 TCGA-2H-A9GJ-01 21 27012004 27012004 C T JAM2 5'UTR 0.50 TCGA-2H-A9GJ-01 21 27253706 27253706 A C APP 3'UTR 0.40 TCGA-2H-A9GJ-01 21 27423456 27423456 G A APP Silent p.C174C 0.47 TCGA-2H-A9GJ-01 22 24836614 24836614 G A ADORA2A Silent p.S132S 0.31 TCGA-2H-A9GJ-01 22 26937050 26937050 G A TPST2 Missense_Mutation p.R183W 0.56 deleterious(0) probably_damaging(1) TCGA-2H-A9GJ-01 22 29190757 29190757 A C XBP1 3'UTR 0.39 TCGA-2H-A9GJ-01 22 31654300 31654300 T C LIMK2 Missense_Mutation p.L26P 0.42 deleterious(0) probably_damaging(1) TCGA-2H-A9GJ-01 2 100210284 100210284 C T AFF3 Silent p.A638A 0.26 TCGA-2H-A9GJ-01 2 135744302 135744302 T C MAP3K19 Missense_Mutation p.T714A 0.58 tolerated(0.34) benign(0.004) TCGA-2H-A9GJ-01 2 155566213 155566214 - CTCACAA KCNJ3 Frame_Shift_Ins p.I270Tfs*15 0.14 TCGA-2H-A9GJ-01 2 160637480 160637480 C T LY75-CD302 Missense_Mutation p.E1711K 0.26 tolerated(0.18) benign(0.39) TCGA-2H-A9GJ-01 2 220413847 220413847 G A TMEM198 Intron 0.42 TCGA-2H-A9GJ-01 2 227661909 227661909 C G IRS1 Missense_Mutation p.D516H 0.24 deleterious(0) probably_damaging(0.972) TCGA-2H-A9GJ-01 2 2328165 2328165 C A MYT1L Intron 0.38 TCGA-2H-A9GJ-01 2 233407776 233407779 CTTC - CHRNG Frame_Shift_Del p.A267Rfs*42 0.33 TCGA-2H-A9GJ-01 2 68691329 68691329 T - FBXO48 3'UTR 0.34 TCGA-2H-A9GJ-01 2 70680449 70680449 C T TGFA Missense_Mutation p.V126I 0.38 tolerated(0.68) benign(0) TCGA-2H-A9GJ-01 2 88056311 88056312 TT - RGPD2 3'UTR 0.19 TCGA-2H-A9GJ-01 2 8919862 8919864 ACC - KIDINS220 In_Frame_Del p.V771del 0.18 TCGA-2H-A9GJ-01 2 90078037 90078037 C T IGKV3D-20 Missense_Mutation p.T25M 0.25 deleterious(0.01) possibly_damaging(0.588) TCGA-2H-A9GJ-01 3 110837677 110837677 C T PVRL3 Missense_Mutation p.T226M 0.38 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GJ-01 3 124439141 124439141 C A RP11-71H17.7 5'Flank 0.10 TCGA-2H-A9GJ-01 3 124906105 124906105 G A SLC12A8 Silent p.I122I 0.10 TCGA-2H-A9GJ-01 3 129547039 129547039 C T TMCC1 Silent p.R61R 0.46 TCGA-2H-A9GJ-01 3 134075997 134075997 C T AMOTL2 3'UTR 0.16 TCGA-2H-A9GJ-01 3 77147383 77147383 C T ROBO2 Missense_Mutation p.R110C 0.43 deleterious(0) unknown(0) TCGA-2H-A9GJ-01 3 78647017 78647017 A G ROBO1 3'UTR 0.37 TCGA-2H-A9GJ-01 3 96706669 96706669 C T EPHA6 Missense_Mutation p.P316S 0.27 tolerated(0.27) possibly_damaging(0.801) TCGA-2H-A9GJ-01 4 100544018 100544018 A G MTTP 3'UTR 0.37 TCGA-2H-A9GJ-01 4 125631668 125631668 A T ANKRD50 5'UTR 0.10 TCGA-2H-A9GJ-01 4 186380990 186380990 C T CCDC110 Missense_Mutation p.E251K 0.45 deleterious(0.01) probably_damaging(0.944) TCGA-2H-A9GJ-01 4 71895155 71895155 G A DCK 3'UTR 0.34 TCGA-2H-A9GJ-01 5 131726389 131726389 A G SLC22A5 Missense_Mutation p.I354V 0.41 tolerated(0.27) benign(0.034) TCGA-2H-A9GJ-01 5 151784743 151784743 A G NMUR2 5'UTR 0.36 TCGA-2H-A9GJ-01 5 167841531 167841531 C T WWC1 Missense_Mutation p.R374W 0.41 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GJ-01 5 167919693 167919693 T A RARS Silent p.T70T 0.29 TCGA-2H-A9GJ-01 5 176025587 176025587 C T GPRIN1 Missense_Mutation p.D417N 0.21 tolerated(0.18) benign(0.085) TCGA-2H-A9GJ-01 5 44812022 44812022 G T MRPS30 Silent p.V251V 0.59 TCGA-2H-A9GJ-01 5 54639246 54639246 G A SKIV2L2 Missense_Mutation p.R290Q 0.69 tolerated(0.27) probably_damaging(0.943) TCGA-2H-A9GJ-01 5 82841391 82841391 G T VCAN Nonsense_Mutation p.G3101* 0.36 TCGA-2H-A9GJ-01 6 117609610 117609610 G C ROS1 3'UTR 0.41 TCGA-2H-A9GJ-01 6 131926512 131926512 G C MED23 Missense_Mutation p.A494G 0.36 tolerated(0.4) benign(0.158) TCGA-2H-A9GJ-01 6 134308784 134308784 G A TBPL1 3'UTR 0.20 TCGA-2H-A9GJ-01 6 155054833 155054833 C T SCAF8 5'UTR 0.33 TCGA-2H-A9GJ-01 6 31783357 31783357 C T HSPA1L 5'Flank 0.76 TCGA-2H-A9GJ-01 6 33385901 33385901 C T CUTA Nonsense_Mutation p.W21* 0.06 TCGA-2H-A9GJ-01 6 49519288 49519288 T C C6orf141 3'UTR 0.13 TCGA-2H-A9GJ-01 6 56322986 56322986 A T DST 3'UTR 0.82 TCGA-2H-A9GJ-01 6 70098843 70098843 G A BAI3 3'UTR 0.27 TCGA-2H-A9GJ-01 6 7290165 7290165 C T SSR1 Splice_Site p.X265_splice 0.73 TCGA-2H-A9GJ-01 6 84936126 84936126 A G KIAA1009 5'UTR 0.33 TCGA-2H-A9GJ-01 6 88372778 88372778 T C ORC3 Silent p.A584A 0.39 TCGA-2H-A9GJ-01 7 100350074 100350074 C T ZAN Silent p.I782I 0.19 TCGA-2H-A9GJ-01 7 128496898 128496898 G C FLNC Missense_Mutation p.R2495P 0.27 deleterious(0.02) probably_damaging(0.997) TCGA-2H-A9GJ-01 7 142572851 142572851 T C TRPV6 Missense_Mutation p.I397V 0.84 tolerated(1) benign(0.001) TCGA-2H-A9GJ-01 7 142997499 142997501 CTT - CASP2 Intron 0.43 TCGA-2H-A9GJ-01 7 156432547 156432547 G A C7orf13 3'UTR 0.32 TCGA-2H-A9GJ-01 7 4050653 4050653 C T SDK1 Silent p.T729T 0.28 TCGA-2H-A9GJ-01 7 56604572 56604572 A G RP11-760D2.5 RNA 0.21 TCGA-2H-A9GJ-01 7 91631632 91631632 G A AKAP9 Missense_Mutation p.E801K 0.30 probably_damaging(0.997) TCGA-2H-A9GJ-01 7 99084263 99084263 C T ZNF789 Missense_Mutation p.P144S 0.50 tolerated(0.15) possibly_damaging(0.706) TCGA-2H-A9GJ-01 8 101931671 101931671 C - YWHAZ 3'UTR 0.12 TCGA-2H-A9GJ-01 8 105361517 105361517 A T DCSTAMP Missense_Mutation p.Y246F 0.47 tolerated(0.18) benign(0.341) TCGA-2H-A9GJ-01 8 145113931 145113931 G A OPLAH Missense_Mutation p.R139C 0.26 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GJ-01 8 17419458 17419458 C T SLC7A2 Missense_Mutation p.L544F 0.37 deleterious(0.04) benign(0.044) TCGA-2H-A9GJ-01 8 38021064 38021069 TAAAAA - LSM1 3'UTR 0.20 TCGA-2H-A9GJ-01 8 399993 399993 T A FBXO25 Missense_Mutation p.L129M 0.37 deleterious(0.02) probably_damaging(0.967) TCGA-2H-A9GJ-01 8 59060733 59060734 - G FAM110B 3'UTR 0.11 TCGA-2H-A9GJ-01 8 59060734 59060734 T G FAM110B 3'UTR 0.20 TCGA-2H-A9GJ-01 8 72111459 72111459 G A EYA1 3'UTR 0.23 TCGA-2H-A9GJ-01 8 75737481 75737481 C G PI15 5'UTR 0.13 TCGA-2H-A9GJ-01 9 104123681 104123681 T A BAAT 3'UTR 0.26 TCGA-2H-A9GJ-01 9 66554691 66554691 T A RP11-262H14.4 RNA 0.15 TCGA-2H-A9GJ-01 9 96010093 96010093 C T WNK2 Missense_Mutation p.P604L 0.32 unknown(0) TCGA-2H-A9GJ-01 X 105451905 105451905 A - MUM1L1 3'UTR 0.43 TCGA-2H-A9GJ-01 X 105452271 105452271 A C MUM1L1 3'UTR 0.80 TCGA-2H-A9GJ-01 X 106466059 106466059 C T PIH1D3 Silent p.C139C 0.80 TCGA-2H-A9GJ-01 X 134303613 134303613 C A CT55 Missense_Mutation p.D62Y 0.85 deleterious(0) probably_damaging(0.973) TCGA-2H-A9GJ-01 X 65244939 65244939 T G VSIG4 Missense_Mutation p.I290L 0.64 deleterious(0.01) possibly_damaging(0.591) TCGA-2H-A9GJ-01 X 9862635 9862635 G T SHROOM2 Silent p.T229T 0.18 TCGA-2H-A9GK-01 10 117059709 117059709 A T ATRNL1 Missense_Mutation p.N861Y 0.21 tolerated(0.07) possibly_damaging(0.595) TCGA-2H-A9GK-01 10 117075097 117075097 A C ATRNL1 Missense_Mutation p.D963A 0.12 deleterious(0) probably_damaging(1) TCGA-2H-A9GK-01 10 118236283 118236283 A C PNLIPRP3 Missense_Mutation p.K431T 0.29 tolerated(0.2) benign(0.05) TCGA-2H-A9GK-01 10 1313258 1313258 C T ADARB2 Missense_Mutation p.A362T 0.19 deleterious(0) possibly_damaging(0.867) TCGA-2H-A9GK-01 10 16960677 16960677 C G CUBN Missense_Mutation p.R2315T 0.13 deleterious(0) probably_damaging(0.967) TCGA-2H-A9GK-01 10 28971215 28971215 A G BAMBI Missense_Mutation p.E223G 0.27 deleterious_low_confidence(0.01) possibly_damaging(0.662) TCGA-2H-A9GK-01 10 47701173 47701173 C T ANTXRL Silent p.C583C 0.09 TCGA-2H-A9GK-01 10 56367692 56367692 T A PCDH15 Intron 0.24 TCGA-2H-A9GK-01 10 60573843 60573843 A C BICC1 Intron 0.20 TCGA-2H-A9GK-01 10 6557012 6557012 C T PRKCQ Missense_Mutation p.C29Y 0.18 deleterious(0) benign(0.168) TCGA-2H-A9GK-01 10 70694639 70694639 G C DDX50 Missense_Mutation p.E496Q 0.06 tolerated(0.18) possibly_damaging(0.574) TCGA-2H-A9GK-01 10 7841141 7841142 AG - ATP5C1 Frame_Shift_Del p.G139Hfs*4 0.15 TCGA-2H-A9GK-01 10 99006069 99006069 G A ARHGAP19 Missense_Mutation p.A318V 0.26 tolerated(0.39) benign(0.426) TCGA-2H-A9GK-01 10 99677288 99677288 C A CRTAC1 Silent p.V228V 0.15 TCGA-2H-A9GK-01 11 105483135 105483135 C T GRIA4 Missense_Mutation p.A74V 0.11 deleterious(0.02) benign(0.014) TCGA-2H-A9GK-01 11 124954182 124954182 T A SLC37A2 Silent p.T364T 0.18 TCGA-2H-A9GK-01 11 132206471 132206471 T A NTM 3'Flank 0.28 TCGA-2H-A9GK-01 11 30032010 30032010 T G KCNA4 3'UTR 0.16 TCGA-2H-A9GK-01 11 4842644 4842644 G C OR51F2 Missense_Mutation p.C10S 0.19 tolerated_low_confidence(0.8) benign(0) TCGA-2H-A9GK-01 11 5263438 5263438 A C CTD-2643I7.1 3'Flank 0.36 TCGA-2H-A9GK-01 11 55110764 55110764 T G OR4A16 Missense_Mutation p.L30V 0.20 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-2H-A9GK-01 11 5566396 5566396 A G OR52H1 Missense_Mutation p.S120P 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-2H-A9GK-01 11 55861094 55861094 T C OR8I2 Missense_Mutation p.F104S 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-2H-A9GK-01 11 60170472 60170472 G C MS4A14 Missense_Mutation p.D136H 0.16 tolerated(1) benign(0.003) TCGA-2H-A9GK-01 11 61048557 61048557 A G VWCE Missense_Mutation p.V313A 0.22 tolerated(0.15) benign(0.006) TCGA-2H-A9GK-01 11 62752130 62752130 C T SLC22A6 Silent p.G11G 0.24 TCGA-2H-A9GK-01 11 6478090 6478090 C T TRIM3 Missense_Mutation p.R289Q 0.20 tolerated(1) benign(0.005) TCGA-2H-A9GK-01 11 66241227 66241227 G A PELI3 Missense_Mutation p.R224Q 0.16 tolerated(0.78) possibly_damaging(0.673) TCGA-2H-A9GK-01 11 6647158 6647158 C A DCHS1 Nonsense_Mutation p.E2242* 0.15 TCGA-2H-A9GK-01 11 6977060 6977060 G T ZNF215 Missense_Mutation p.L284F 0.17 tolerated(0.08) probably_damaging(0.997) TCGA-2H-A9GK-01 11 89133398 89133398 T C NOX4 Silent p.K332K 0.17 TCGA-2H-A9GK-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.15 tolerated(0.19) benign(0.01) TCGA-2H-A9GK-01 11 92600247 92600247 A C FAT3 Missense_Mutation p.N4000T 0.30 benign(0.326) TCGA-2H-A9GK-01 12 101560435 101560435 A G SLC5A8 Missense_Mutation p.W455R 0.12 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GK-01 12 103237424 103237424 C G PAH Missense_Mutation p.R400T 0.17 deleterious(0.02) benign(0.022) TCGA-2H-A9GK-01 12 108096757 108096757 G C PWP1 Missense_Mutation p.W284C 0.19 deleterious(0) probably_damaging(1) TCGA-2H-A9GK-01 12 110463586 110463586 C T ANKRD13A Missense_Mutation p.R281C 0.12 deleterious(0) probably_damaging(1) TCGA-2H-A9GK-01 12 133306451 133306451 C G ANKLE2 Missense_Mutation p.R766T 0.13 tolerated(0.26) benign(0.164) TCGA-2H-A9GK-01 12 32135930 32135930 A G KIAA1551 Missense_Mutation p.K681E 0.26 deleterious(0) probably_damaging(0.992) TCGA-2H-A9GK-01 12 42729775 42729775 G - PPHLN1 Frame_Shift_Del p.S24Mfs*7 0.19 TCGA-2H-A9GK-01 12 45171055 45171055 A C NELL2 Missense_Mutation p.F267V 0.14 tolerated(0.08) benign(0.118) TCGA-2H-A9GK-01 12 4736754 4736754 G A AKAP3 Silent p.P438P 0.30 TCGA-2H-A9GK-01 12 56558198 56558198 T C SMARCC2 Missense_Mutation p.M1153V 0.26 tolerated_low_confidence(0.47) unknown(0) TCGA-2H-A9GK-01 12 74679644 74679644 A G RP11-81H3.2 RNA 0.08 TCGA-2H-A9GK-01 12 74934088 74934088 G T ATXN7L3B 3'UTR 0.42 TCGA-2H-A9GK-01 12 78392127 78392127 C A NAV3 Missense_Mutation p.P251T 0.21 deleterious(0) probably_damaging(0.951) TCGA-2H-A9GK-01 12 78604931 78604931 T G NAV3 3'Flank 0.11 TCGA-2H-A9GK-01 12 78605090 78605090 A G NAV3 3'Flank 0.21 TCGA-2H-A9GK-01 12 78606036 78606036 C A NAV3 3'Flank 0.18 TCGA-2H-A9GK-01 12 85517861 85517861 T C LRRIQ1 Silent p.L1191L 0.21 TCGA-2H-A9GK-01 12 8628756 8628756 T C CLEC6A Silent p.S135S 0.23 TCGA-2H-A9GK-01 12 9268504 9268504 C G A2M 5'UTR 0.21 TCGA-2H-A9GK-01 13 101762982 101762982 A C NALCN Silent p.T784T 0.18 TCGA-2H-A9GK-01 13 33679283 33679283 A G STARD13 3'UTR 0.28 TCGA-2H-A9GK-01 13 48835715 48835715 C T ITM2B 3'UTR 0.24 TCGA-2H-A9GK-01 13 58299065 58299065 A G PCDH17 Silent p.P1039P 0.35 TCGA-2H-A9GK-01 14 33291901 33291901 C G AKAP6 Missense_Mutation p.L1628V 0.26 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GK-01 14 36777397 36777397 T A MBIP Splice_Site p.X264_splice 0.26 TCGA-2H-A9GK-01 14 44974292 44974292 T G FSCB Missense_Mutation p.E633D 0.08 tolerated(0.08) unknown(0) TCGA-2H-A9GK-01 14 65000169 65000169 T G RP11-973N13.4 Intron 0.23 TCGA-2H-A9GK-01 14 77908903 77908903 C T VIPAS39 Missense_Mutation p.R245K 0.34 tolerated(0.81) benign(0.008) TCGA-2H-A9GK-01 15 25220075 25220075 A C SNRPN Intron 0.20 TCGA-2H-A9GK-01 15 27184643 27184643 T C GABRA5 Intron 0.50 TCGA-2H-A9GK-01 15 29992657 29992658 - A TJP1 3'UTR 0.26 TCGA-2H-A9GK-01 15 63004277 63004277 G C TLN2 Splice_Site p.X878_splice 0.31 TCGA-2H-A9GK-01 15 65347312 65347312 G A RASL12 Silent p.T242T 0.42 TCGA-2H-A9GK-01 15 74623044 74623044 G C CCDC33 Missense_Mutation p.M499I 0.18 tolerated(0.12) benign(0.007) TCGA-2H-A9GK-01 15 82335721 82335721 G C MEX3B Missense_Mutation p.S497C 0.25 tolerated(0.07) possibly_damaging(0.892) TCGA-2H-A9GK-01 15 93586635 93586635 C G RGMA 3'Flank 0.31 TCGA-2H-A9GK-01 16 1584218 1584218 G A TMEM204 5'UTR 0.20 TCGA-2H-A9GK-01 16 20480934 20480934 C T ACSM2A Silent p.V163V 0.31 TCGA-2H-A9GK-01 16 29124405 29124405 C G RP11-426C22.5 5'Flank 0.16 TCGA-2H-A9GK-01 16 69733225 69733225 A G NFAT5 3'UTR 0.18 TCGA-2H-A9GK-01 16 71763759 71763759 C G AP1G1 3'Flank 0.20 TCGA-2H-A9GK-01 16 71885137 71885137 A T ATXN1L Missense_Mutation p.E498D 0.25 deleterious(0) probably_damaging(0.948) TCGA-2H-A9GK-01 17 15644474 15644474 C A TBC1D26 Silent p.A195A 0.16 TCGA-2H-A9GK-01 17 17106253 17106253 C T PLD6 Missense_Mutation p.R196Q 0.20 tolerated(0.29) benign(0.069) TCGA-2H-A9GK-01 17 22024357 22024357 A C MTRNR2L1 3'Flank 0.19 TCGA-2H-A9GK-01 17 32646540 32646540 T G CCL8 Missense_Mutation p.L7R 0.21 deleterious(0) possibly_damaging(0.87) TCGA-2H-A9GK-01 17 42964094 42964094 C T EFTUD2 Missense_Mutation p.D44N 0.20 tolerated(0.41) benign(0.019) TCGA-2H-A9GK-01 17 46685137 46685137 G A HOXB7 3'UTR 0.17 TCGA-2H-A9GK-01 17 5032308 5032308 G A USP6 5'UTR 0.40 TCGA-2H-A9GK-01 17 59974886 59974886 G A INTS2 Missense_Mutation p.H488Y 0.21 deleterious(0) possibly_damaging(0.816) TCGA-2H-A9GK-01 17 61883937 61883937 C T DDX42 Missense_Mutation p.H257Y 0.18 deleterious(0.02) possibly_damaging(0.828) TCGA-2H-A9GK-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.25 TCGA-2H-A9GK-01 17 78865547 78865547 G T RPTOR Missense_Mutation p.V671L 0.20 deleterious(0.04) benign(0.115) TCGA-2H-A9GK-01 18 28934607 28934607 G A DSG1 Silent p.S816S 0.37 TCGA-2H-A9GK-01 18 31318535 31318535 T C ASXL3 Silent p.T389T 0.30 TCGA-2H-A9GK-01 18 6882152 6882152 T C ARHGAP28 Missense_Mutation p.L277P 0.28 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GK-01 18 6914908 6914908 A G ARHGAP28 3'UTR 0.22 TCGA-2H-A9GK-01 19 11018787 11018787 G A CARM1 Missense_Mutation p.R140Q 0.19 deleterious(0.03) probably_damaging(0.949) TCGA-2H-A9GK-01 19 1383710 1383710 C T NDUFS7 5'UTR 0.38 TCGA-2H-A9GK-01 19 15838920 15838920 C G OR10H2 Missense_Mutation p.L23V 0.31 tolerated(0.19) benign(0.011) TCGA-2H-A9GK-01 19 16982133 16982133 C G SIN3B Missense_Mutation p.T871S 0.29 tolerated(0.37) benign(0.041) TCGA-2H-A9GK-01 19 20229823 20229823 A G ZNF90 Missense_Mutation p.D487G 0.10 tolerated(1) benign(0.002) TCGA-2H-A9GK-01 19 20236041 20236041 T C CTC-260E6.2 RNA 0.13 TCGA-2H-A9GK-01 19 22155412 22155412 T C ZNF208 Silent p.E808E 0.19 TCGA-2H-A9GK-01 19 22271914 22271914 T G ZNF257 Silent p.T454T 0.11 TCGA-2H-A9GK-01 19 23328686 23328686 A G ZNF730 Silent p.G280G 0.19 TCGA-2H-A9GK-01 19 23926372 23926372 A G ZNF681 3'UTR 0.22 TCGA-2H-A9GK-01 19 3624103 3624103 C T CACTIN Silent p.P75P 0.29 TCGA-2H-A9GK-01 19 36322231 36322231 C G NPHS1 Missense_Mutation p.Q1118H 0.20 deleterious(0.04) benign(0.01) TCGA-2H-A9GK-01 19 37370458 37370458 T A ZNF345 3'UTR 0.35 TCGA-2H-A9GK-01 19 37643365 37643365 G C ZNF585A Nonsense_Mutation p.S424* 0.34 TCGA-2H-A9GK-01 19 37975773 37975773 C T ZNF570 Nonsense_Mutation p.Q417* 0.11 TCGA-2H-A9GK-01 19 38033286 38033286 A C ZNF793 3'UTR 0.09 TCGA-2H-A9GK-01 19 38160930 38160930 C T ZNF781 Silent p.K40K 0.12 TCGA-2H-A9GK-01 19 41765522 41765522 C T AXL Missense_Mutation p.R800W 0.11 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GK-01 19 45716562 45716562 G C EXOC3L2 Missense_Mutation p.A332G 0.11 tolerated(0.06) possibly_damaging(0.612) TCGA-2H-A9GK-01 19 46128025 46128025 C T EML2 Missense_Mutation p.D466N 0.24 deleterious(0.03) benign(0.115) TCGA-2H-A9GK-01 19 50385558 50385558 C G TBC1D17 Missense_Mutation p.F233L 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-2H-A9GK-01 19 51837087 51837087 G C VSIG10L Silent p.L844L 0.31 TCGA-2H-A9GK-01 19 53741686 53741686 T G ZNF677 Missense_Mutation p.E98D 0.41 tolerated(0.15) benign(0.002) TCGA-2H-A9GK-01 19 56981367 56981367 T G ZNF667 Intron 0.30 TCGA-2H-A9GK-01 19 58491553 58491553 T C ZNF606 Missense_Mutation p.I165M 0.12 deleterious(0.04) benign(0.166) TCGA-2H-A9GK-01 1 107601368 107601368 T G PRMT6 3'UTR 0.20 TCGA-2H-A9GK-01 1 113231692 113231692 G A MOV10 Silent p.R91R 0.17 TCGA-2H-A9GK-01 1 12884676 12884676 T G PRAMEF11 3'UTR 0.25 TCGA-2H-A9GK-01 1 142620697 142620697 T G RP11-417J8.6 RNA 0.25 TCGA-2H-A9GK-01 1 152192299 152192299 A T HRNR Silent p.S602S 0.35 TCGA-2H-A9GK-01 1 152283719 152283719 T G FLG Missense_Mutation p.S1215R 0.11 benign(0.307) TCGA-2H-A9GK-01 1 152382640 152382640 G A CRNN Silent p.S306S 0.35 TCGA-2H-A9GK-01 1 152637044 152637044 A C LCE2D 3'UTR 0.11 TCGA-2H-A9GK-01 1 158549657 158549657 T G OR10X1 Missense_Mutation p.Q11H 0.24 tolerated(0.54) benign(0.001) TCGA-2H-A9GK-01 1 158584081 158584081 C T SPTA1 Silent p.V2268V 0.16 TCGA-2H-A9GK-01 1 158815416 158815416 A C MNDA Silent p.R204R 0.34 TCGA-2H-A9GK-01 1 170705626 170705626 A C PRRX1 3'UTR 0.34 TCGA-2H-A9GK-01 1 170928680 170928680 C A MROH9 Missense_Mutation p.P77Q 0.19 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GK-01 1 175092723 175092723 C T TNN Silent p.G946G 0.39 TCGA-2H-A9GK-01 1 197091057 197091057 G C ASPM Silent p.L1286L 0.31 TCGA-2H-A9GK-01 1 197313525 197313525 G T CRB1 Missense_Mutation p.G256V 0.38 deleterious(0) probably_damaging(1) TCGA-2H-A9GK-01 1 204426964 204426964 G T PIK3C2B Silent p.S535S 0.36 TCGA-2H-A9GK-01 1 207737337 207737337 C G CR1 Missense_Mutation p.R1239G 0.45 tolerated(0.06) benign(0.125) TCGA-2H-A9GK-01 1 22188551 22188551 C T HSPG2 Missense_Mutation p.G1600R 0.24 probably_damaging(1) TCGA-2H-A9GK-01 1 228505712 228505712 C A OBSCN Missense_Mutation p.H5614N 0.42 benign(0.232) TCGA-2H-A9GK-01 1 241753511 241753511 T G KMO Silent p.T402T 0.60 TCGA-2H-A9GK-01 1 244640841 244640841 A G C1orf101 Splice_Site p.X39_splice 0.08 TCGA-2H-A9GK-01 1 248039702 248039702 T C TRIM58 Silent p.L458L 0.44 TCGA-2H-A9GK-01 1 248201876 248201876 T C OR2L2 Missense_Mutation p.F103L 0.41 deleterious(0) possibly_damaging(0.686) TCGA-2H-A9GK-01 1 35223171 35223171 G A GJB5 Silent p.Q80Q 0.11 TCGA-2H-A9GK-01 1 46494458 46494458 T G MAST2 Missense_Mutation p.Y691D 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-2H-A9GK-01 1 66384385 66384385 T C PDE4B Silent p.L50L 0.11 TCGA-2H-A9GK-01 1 66798111 66798111 C T PDE4B Intron 0.28 TCGA-2H-A9GK-01 1 82456713 82456713 T C LPHN2 Missense_Mutation p.C1366R 0.14 deleterious_low_confidence(0) benign(0.056) TCGA-2H-A9GK-01 1 97270350 97270350 T C PTBP2 Intron 0.10 TCGA-2H-A9GK-01 1 99772254 99772254 T G LPPR4 Silent p.T660T 0.28 TCGA-2H-A9GK-01 20 1629814 1629814 C T SIRPG Missense_Mutation p.R105H 0.23 tolerated(0.08) benign(0.082) TCGA-2H-A9GK-01 20 16730646 16730646 T C OTOR Silent p.V118V 0.30 TCGA-2H-A9GK-01 20 23545571 23545571 T G CST9L 3'UTR 0.20 TCGA-2H-A9GK-01 20 34571994 34571994 C T CNBD2 Silent p.D166D 0.25 TCGA-2H-A9GK-01 20 3673775 3673775 G A SIGLEC1 Missense_Mutation p.A1171V 0.22 tolerated(0.05) possibly_damaging(0.768) TCGA-2H-A9GK-01 20 39798809 39798809 C T PLCG1 Missense_Mutation p.S903L 0.20 tolerated(0.12) benign(0.048) TCGA-2H-A9GK-01 20 47570297 47570297 G A ARFGEF2 Missense_Mutation p.A270T 0.23 tolerated(0.72) benign(0) TCGA-2H-A9GK-01 20 55027698 55027698 C T CASS4 Missense_Mutation p.S489F 0.09 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GK-01 21 14982728 14982728 A C POTED Missense_Mutation p.K60T 0.47 deleterious_low_confidence(0) possibly_damaging(0.678) TCGA-2H-A9GK-01 21 31538834 31538834 A G CLDN17 Silent p.A34A 0.28 TCGA-2H-A9GK-01 21 31661811 31661811 A C KRTAP25-1 5'UTR 0.27 TCGA-2H-A9GK-01 21 32585673 32585673 T C TIAM1 Intron 0.32 TCGA-2H-A9GK-01 21 42748941 42748941 C T MX2 Silent p.F36F 0.43 TCGA-2H-A9GK-01 21 47734720 47734720 G C C21orf58 Silent p.A173A 0.33 TCGA-2H-A9GK-01 21 47819540 47819540 G A PCNT Missense_Mutation p.D1541N 0.39 possibly_damaging(0.811) TCGA-2H-A9GK-01 22 24483514 24483514 G A CABIN1 Missense_Mutation p.V1125I 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-2H-A9GK-01 22 40721244 40721244 G C TNRC6B 3'UTR 0.14 TCGA-2H-A9GK-01 22 44891152 44891152 T G LDOC1L 3'UTR 0.12 TCGA-2H-A9GK-01 2 141214096 141214096 A G LRP1B Silent p.T3297T 0.43 TCGA-2H-A9GK-01 2 176948500 176948500 A G EVX2 Missense_Mutation p.M2T 0.42 deleterious_low_confidence(0) possibly_damaging(0.803) TCGA-2H-A9GK-01 2 179185014 179185014 A C OSBPL6 Intron 0.41 TCGA-2H-A9GK-01 2 224462806 224462806 A C SCG2 Missense_Mutation p.L399V 0.45 tolerated(0.36) benign(0.006) TCGA-2H-A9GK-01 2 66796037 66796037 G C MEIS1 Intron 0.43 TCGA-2H-A9GK-01 2 74274419 74274419 C T TET3 Missense_Mutation p.P324S 0.54 deleterious(0) possibly_damaging(0.873) TCGA-2H-A9GK-01 2 90212216 90212216 T G IGKV3D-11 Missense_Mutation p.F103C 0.43 tolerated(0.18) benign(0.018) TCGA-2H-A9GK-01 2 98319210 98319210 T A LINC01125 RNA 0.64 TCGA-2H-A9GK-01 2 99226273 99226273 G C UNC50 Missense_Mutation p.L17F 0.17 tolerated(0.07) benign(0.216) TCGA-2H-A9GK-01 3 105086285 105086285 G A ALCAM Silent p.L11L 0.18 TCGA-2H-A9GK-01 3 122133874 122133874 C T WDR5B Missense_Mutation p.D168N 0.29 deleterious(0) possibly_damaging(0.635) TCGA-2H-A9GK-01 3 125876244 125876244 T C ALDH1L1 Missense_Mutation p.D167G 0.22 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-2H-A9GK-01 3 128840397 128840397 G A RAB43 5'UTR 0.53 TCGA-2H-A9GK-01 3 130367915 130367915 A G COL6A6 Missense_Mutation p.K1748E 0.20 deleterious(0.01) benign(0.002) TCGA-2H-A9GK-01 3 134978451 134978451 A C EPHB1 3'UTR 0.23 TCGA-2H-A9GK-01 3 140281027 140281027 T G CLSTN2 Missense_Mutation p.C697G 0.40 deleterious(0) probably_damaging(1) TCGA-2H-A9GK-01 3 147128856 147128856 A C ZIC1 Missense_Mutation p.L319F 0.24 deleterious(0) probably_damaging(1) TCGA-2H-A9GK-01 3 165491101 165491101 T A BCHE 3'UTR 0.21 TCGA-2H-A9GK-01 3 174000250 174000250 T A NLGN1 3'UTR 0.25 TCGA-2H-A9GK-01 3 20043253 20043253 G A PP2D1 Missense_Mutation p.S120F 0.12 tolerated(0.19) benign(0.014) TCGA-2H-A9GK-01 3 3030058 3030058 G A CNTN4 Missense_Mutation p.R463K 0.13 tolerated(0.49) benign(0.04) TCGA-2H-A9GK-01 3 47165487 47165487 G A SETD2 Silent p.A213A 0.27 TCGA-2H-A9GK-01 3 47747971 47747971 C T SMARCC1 Missense_Mutation p.R323Q 0.08 tolerated(0.13) benign(0.011) TCGA-2H-A9GK-01 3 48619360 48619360 C T COL7A1 Missense_Mutation p.G1551E 0.11 unknown(0) TCGA-2H-A9GK-01 3 49405962 49405962 T C RHOA Missense_Mutation p.D59G 0.08 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GK-01 4 113825618 113825618 A G ANK2 5'UTR 0.16 TCGA-2H-A9GK-01 4 114274919 114274919 A G ANK2 Silent p.K1715K 0.67 TCGA-2H-A9GK-01 4 123542066 123542066 C T IL21 Missense_Mutation p.R34H 0.17 tolerated(0.11) benign(0.173) TCGA-2H-A9GK-01 4 139964386 139964386 G A CCRN4L Missense_Mutation p.V117I 0.08 tolerated(0.22) benign(0.004) TCGA-2H-A9GK-01 4 141560556 141560556 C G TBC1D9 Missense_Mutation p.L788F 0.35 deleterious(0.05) benign(0.221) TCGA-2H-A9GK-01 4 158041814 158041814 G T GLRB Missense_Mutation p.G77C 0.16 deleterious(0.02) possibly_damaging(0.77) TCGA-2H-A9GK-01 4 16504190 16504190 T G LDB2 3'UTR 0.12 TCGA-2H-A9GK-01 4 175898111 175898111 T G ADAM29 Missense_Mutation p.F479V 0.32 tolerated(1) benign(0) TCGA-2H-A9GK-01 4 183267985 183267985 G T TENM3 Silent p.G138G 0.16 TCGA-2H-A9GK-01 4 183594180 183594180 A C TENM3 Missense_Mutation p.Q378H 0.40 tolerated(0.55) benign(0.216) TCGA-2H-A9GK-01 4 187206815 187206815 G A F11 Missense_Mutation p.R443H 0.32 tolerated(0.12) benign(0.308) TCGA-2H-A9GK-01 4 189018310 189018310 T G TRIML2 Missense_Mutation p.K167T 0.43 deleterious(0.02) benign(0.035) TCGA-2H-A9GK-01 4 20618698 20618698 A G SLIT2 Missense_Mutation p.K1338R 0.12 tolerated(0.31) benign(0.004) TCGA-2H-A9GK-01 4 20985516 20985516 C T KCNIP4 Intron 0.12 TCGA-2H-A9GK-01 4 23794082 23794086 TTATC AAAT PPARGC1A 3'UTR 0.18 TCGA-2H-A9GK-01 4 42895333 42895333 G A GRXCR1 Missense_Mutation p.R17Q 0.10 deleterious(0.01) probably_damaging(0.996) TCGA-2H-A9GK-01 4 46314669 46314669 G C GABRA2 Missense_Mutation p.P107R 0.15 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GK-01 4 5500937 5500937 T G STK32B 3'UTR 0.38 TCGA-2H-A9GK-01 4 79461755 79461755 G A FRAS1 Missense_Mutation p.R3839Q 0.24 probably_damaging(0.947) TCGA-2H-A9GK-01 4 88235037 88235037 G C HSD17B13 Missense_Mutation p.I211M 0.19 deleterious(0) possibly_damaging(0.863) TCGA-2H-A9GK-01 5 110413367 110413367 C A TSLP 3'Flank 0.38 TCGA-2H-A9GK-01 5 127671703 127671703 G A FBN2 Missense_Mutation p.T1234M 0.39 deleterious(0.01) probably_damaging(0.967) TCGA-2H-A9GK-01 5 128864278 128864278 A C ADAMTS19 Missense_Mutation p.E406D 0.32 deleterious(0.03) possibly_damaging(0.853) TCGA-2H-A9GK-01 5 140250534 140250534 G A PCDHA11 Missense_Mutation p.G616S 0.17 tolerated_low_confidence(0.21) benign(0.006) TCGA-2H-A9GK-01 5 140553230 140553230 G A PCDHB7 Missense_Mutation p.G272R 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-2H-A9GK-01 5 140581786 140581786 A G PCDHB11 3'UTR 0.12 TCGA-2H-A9GK-01 5 1432626 1432626 C T SLC6A3 Silent p.S202S 0.26 TCGA-2H-A9GK-01 5 143854168 143854168 A G KCTD16 3'UTR 0.39 TCGA-2H-A9GK-01 5 153026562 153026562 T G GRIA1 Missense_Mutation p.S109A 0.31 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GK-01 5 172571581 172571581 C G BNIP1 Missense_Mutation p.I11M 0.08 deleterious(0.03) benign(0.085) TCGA-2H-A9GK-01 5 175110525 175110525 C T HRH2 Silent p.L97L 0.21 TCGA-2H-A9GK-01 5 1880924 1880924 A C IRX4 Missense_Mutation p.S108A 0.25 tolerated(0.63) benign(0.001) TCGA-2H-A9GK-01 5 21783471 21783471 T G CDH12 Missense_Mutation p.K463N 0.18 deleterious(0) benign(0.112) TCGA-2H-A9GK-01 5 40999877 40999877 T G MROH2B Missense_Mutation p.K1496T 0.19 deleterious(0.03) benign(0.039) TCGA-2H-A9GK-01 5 45261604 45261604 A G HCN1 3'UTR 0.18 TCGA-2H-A9GK-01 5 73109365 73109365 C G ARHGEF28 Intron 0.31 TCGA-2H-A9GK-01 5 94957074 94957074 G C GPR150 Missense_Mutation p.Q365H 0.18 tolerated(0.09) benign(0.041) TCGA-2H-A9GK-01 5 9630321 9630321 T G TAS2R1 5'UTR 0.13 TCGA-2H-A9GK-01 6 116758015 116758015 C T DSE Missense_Mutation p.A795V 0.19 deleterious_low_confidence(0) possibly_damaging(0.783) TCGA-2H-A9GK-01 6 147014047 147014047 G C ADGB Missense_Mutation p.E525Q 0.42 tolerated(0.13) benign(0.174) TCGA-2H-A9GK-01 6 168227147 168227147 A G MLLT4 5'Flank 0.09 TCGA-2H-A9GK-01 6 19840519 19840519 A G ID4 3'UTR 0.36 TCGA-2H-A9GK-01 6 26027344 26027344 C T HIST1H4B Missense_Mutation p.R46Q 0.11 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-2H-A9GK-01 6 32159117 32159117 A T GPSM3 3'UTR 0.28 TCGA-2H-A9GK-01 6 43168191 43168191 C T CUL9 Silent p.I1134I 0.11 TCGA-2H-A9GK-01 6 43593283 43593283 A G GTPBP2 Silent p.R174R 0.09 TCGA-2H-A9GK-01 6 56471114 56471114 T A DST Intron 0.17 TCGA-2H-A9GK-01 6 56483314 56483314 G A DST Intron 0.08 TCGA-2H-A9GK-01 6 57467108 57467108 G A PRIM2 3'UTR 0.14 TCGA-2H-A9GK-01 6 62390861 62390861 A C KHDRBS2 3'UTR 0.17 TCGA-2H-A9GK-01 6 65300762 65300762 T A EYS Missense_Mutation p.L1666F 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.5) TCGA-2H-A9GK-01 6 72922741 72922741 T C RIMS1 Intron 0.16 TCGA-2H-A9GK-01 6 88852643 88852643 A C CNR1 3'UTR 0.17 TCGA-2H-A9GK-01 6 99285314 99285317 ACAT TACATA POU3F2 3'UTR 0.11 TCGA-2H-A9GK-01 7 100224466 100224466 C T TFR2 Missense_Mutation p.E686K 0.51 tolerated(0.14) possibly_damaging(0.773) TCGA-2H-A9GK-01 7 108524266 108524266 A G C7orf66 Missense_Mutation p.L49P 0.21 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-2H-A9GK-01 7 110603023 110603023 T G IMMP2L Intron 0.31 TCGA-2H-A9GK-01 7 116199131 116199131 C A CAV1 Silent p.I109I 0.09 TCGA-2H-A9GK-01 7 12401077 12401077 A C VWDE Missense_Mutation p.V990G 0.10 deleterious(0) possibly_damaging(0.813) TCGA-2H-A9GK-01 7 131853090 131853090 T C PLXNA4 Missense_Mutation p.K1420R 0.39 tolerated(0.24) possibly_damaging(0.583) TCGA-2H-A9GK-01 7 136700570 136700570 T C CHRM2 Missense_Mutation p.S320P 0.17 tolerated(0.14) possibly_damaging(0.653) TCGA-2H-A9GK-01 7 19156473 19156473 A C TWIST1 Missense_Mutation p.F158V 0.15 deleterious(0) probably_damaging(1) TCGA-2H-A9GK-01 7 20825623 20825623 A C SP8 Intron 0.25 TCGA-2H-A9GK-01 7 3681696 3681696 T G SDK1 Silent p.T224T 0.15 TCGA-2H-A9GK-01 7 37916485 37916485 A T NME8 Missense_Mutation p.E290D 0.22 tolerated(0.07) probably_damaging(0.926) TCGA-2H-A9GK-01 7 38402533 38402533 A C TRGV2 Missense_Mutation p.L96V 0.17 tolerated(0.47) benign(0.146) TCGA-2H-A9GK-01 7 38725720 38725720 C A FAM183B 5'UTR 0.23 TCGA-2H-A9GK-01 7 45725592 45725592 A T ADCY1 Missense_Mutation p.K702M 0.23 tolerated(0.07) benign(0.163) TCGA-2H-A9GK-01 7 45953263 45953263 A C IGFBP3 3'Flank 0.38 TCGA-2H-A9GK-01 7 48506610 48506610 A G ABCA13 Silent p.Q4291Q 0.27 TCGA-2H-A9GK-01 7 63538205 63538205 G T ZNF727 Nonsense_Mutation p.E260* 0.34 TCGA-2H-A9GK-01 7 87046712 87046712 A C ABCB4 Missense_Mutation p.I866M 0.18 deleterious(0.01) possibly_damaging(0.675) TCGA-2H-A9GK-01 7 90837591 90837591 G A CDK14 3'UTR 0.08 TCGA-2H-A9GK-01 8 104898169 104898169 T C RIMS2 Silent p.L448L 0.24 TCGA-2H-A9GK-01 8 108297012 108297012 T C ANGPT1 Missense_Mutation p.Q368R 0.34 tolerated(0.6) benign(0.011) TCGA-2H-A9GK-01 8 11295948 11295948 A T C8orf12 Missense_Mutation p.D71V 0.18 deleterious_low_confidence(0.03) benign(0.043) TCGA-2H-A9GK-01 8 113662429 113662429 T C CSMD3 Missense_Mutation p.K1052E 0.30 tolerated(0.16) possibly_damaging(0.812) TCGA-2H-A9GK-01 8 114111188 114111188 T A CSMD3 Missense_Mutation p.E238D 0.11 tolerated(0.44) benign(0.321) TCGA-2H-A9GK-01 8 124261277 124261277 C G ZHX1 3'UTR 0.46 TCGA-2H-A9GK-01 8 12881271 12881271 T - KIAA1456 3'UTR 0.20 TCGA-2H-A9GK-01 8 139668162 139668162 C A COL22A1 Missense_Mutation p.G1104V 0.08 unknown(0) TCGA-2H-A9GK-01 8 139833602 139833602 C A COL22A1 Missense_Mutation p.G341V 0.20 unknown(0) TCGA-2H-A9GK-01 8 1497663 1497663 C T DLGAP2 Silent p.D268D 0.12 TCGA-2H-A9GK-01 8 25276973 25276973 T C GNRH1 Missense_Mutation p.S81G 0.12 deleterious(0.03) benign(0.037) TCGA-2H-A9GK-01 8 29023209 29023209 C T KIF13B Silent p.E413E 0.12 TCGA-2H-A9GK-01 8 32463089 32463089 A C NRG1 Missense_Mutation p.E96D 0.24 deleterious(0) possibly_damaging(0.57) TCGA-2H-A9GK-01 8 35608143 35608143 T A UNC5D Missense_Mutation p.L660H 0.11 tolerated(0.11) probably_damaging(0.999) TCGA-2H-A9GK-01 8 55372815 55372815 C G SOX17 3'UTR 0.24 TCGA-2H-A9GK-01 8 67576954 67576954 G T VCPIP1 Missense_Mutation p.S747Y 0.33 deleterious(0) possibly_damaging(0.635) TCGA-2H-A9GK-01 8 69730808 69730808 A C C8orf34 3'Flank 0.21 TCGA-2H-A9GK-01 8 72754825 72754825 C T MSC 3'UTR 0.25 TCGA-2H-A9GK-01 8 72755778 72755778 C G RP11-383H13.1 Missense_Mutation p.P48A 0.13 unknown(0) TCGA-2H-A9GK-01 8 75147746 75147746 A C JPH1 3'UTR 0.25 TCGA-2H-A9GK-01 8 85096594 85096594 A C RALYL 5'Flank 0.16 TCGA-2H-A9GK-01 8 91893332 91893332 C T NECAB1 Silent p.L111L 0.12 TCGA-2H-A9GK-01 8 94746364 94746364 G A RBM12B Missense_Mutation p.P759S 0.17 tolerated_low_confidence(0.61) benign(0.004) TCGA-2H-A9GK-01 9 108234233 108234233 T A FSD1L Missense_Mutation p.L130I 0.25 tolerated(0.48) probably_damaging(0.996) TCGA-2H-A9GK-01 9 119460513 119460513 G A TRIM32 Silent p.Q164Q 0.19 TCGA-2H-A9GK-01 9 122004356 122004356 T A BRINP1 Missense_Mutation p.H183L 0.14 deleterious(0) probably_damaging(0.954) TCGA-2H-A9GK-01 9 124062340 124062340 C T GSN Intron 0.17 TCGA-2H-A9GK-01 9 132995741 132995741 G A NCS1 3'UTR 0.33 TCGA-2H-A9GK-01 9 137715273 137715273 C A COL5A1 Silent p.G1552G 0.14 TCGA-2H-A9GK-01 9 26842097 26842097 C A CAAP1 3'UTR 0.14 TCGA-2H-A9GK-01 9 32635065 32635065 T G TAF1L Missense_Mutation p.Q171H 0.21 tolerated_low_confidence(0.1) benign(0.221) TCGA-2H-A9GK-01 9 34657096 34657096 G A IL11RA Nonsense_Mutation p.W132* 0.10 TCGA-2H-A9GK-01 9 37515946 37515946 C T FBXO10 Missense_Mutation p.R884Q 0.22 tolerated(0.21) benign(0.002) TCGA-2H-A9GK-01 9 73376527 73376527 T C TRPM3 Missense_Mutation p.K421R 0.37 tolerated(0.15) benign(0.228) TCGA-2H-A9GK-01 9 96051729 96051729 G A WNK2 Missense_Mutation p.V1602M 0.11 unknown(0) TCGA-2H-A9GK-01 X 101770005 101770005 A C TMSB15A Silent p.L29L 0.34 TCGA-2H-A9GK-01 X 104464871 104464871 T C TEX13A Missense_Mutation p.S71G 0.53 tolerated(0.29) benign(0.003) TCGA-2H-A9GK-01 X 144911335 144911335 A C TMEM257 3'UTR 0.51 TCGA-2H-A9GK-01 X 146341198 146341198 A G MIR509-3 RNA 0.17 TCGA-2H-A9GK-01 X 150791459 150791459 T G PASD1 Missense_Mutation p.F157V 0.35 tolerated(0.5) benign(0.006) TCGA-2H-A9GK-01 X 151303610 151303610 C A MAGEA10 Silent p.L161L 0.20 TCGA-2H-A9GK-01 X 152097180 152097180 G T ZNF185 Missense_Mutation p.V297L 0.49 tolerated(0.24) benign(0.003) TCGA-2H-A9GK-01 X 153073805 153073805 G T PDZD4 Intron 0.58 TCGA-2H-A9GK-01 X 155008751 155008751 G C SPRY3 3'UTR 0.17 TCGA-2H-A9GK-01 X 205431 205431 C T PLCXD1 Silent p.N53N 0.34 TCGA-2H-A9GK-01 X 36337395 36337395 A G CXorf30 Missense_Mutation p.R252G 0.38 tolerated(0.08) benign(0.225) TCGA-2H-A9GK-01 X 43571184 43571184 C T MAOA Silent p.Y124Y 0.43 TCGA-2H-A9GK-01 X 53565335 53565335 C T HUWE1 Missense_Mutation p.D3987N 0.14 unknown(0) TCGA-2H-A9GK-01 X 72297457 72297457 G A PABPC1L2A 3'UTR 0.44 TCGA-2H-A9GK-01 X 75004857 75004857 G C MAGEE2 Missense_Mutation p.H10Q 0.45 tolerated_low_confidence(0.7) benign(0.001) TCGA-2H-A9GK-01 X 83129284 83129284 A C CYLC1 Missense_Mutation p.E523A 0.36 tolerated(0.22) benign(0.403) TCGA-2H-A9GL-01 10 100157138 100157140 TCA - PYROXD2 In_Frame_Del p.M196del 0.28 TCGA-2H-A9GL-01 10 118236172 118236172 T G PNLIPRP3 Missense_Mutation p.L394R 0.32 deleterious(0) probably_damaging(0.953) TCGA-2H-A9GL-01 10 118460528 118460528 G A HSPA12A Missense_Mutation p.H123Y 0.28 deleterious(0.02) possibly_damaging(0.694) TCGA-2H-A9GL-01 10 118681020 118681020 T A KIAA1598 Missense_Mutation p.M374L 0.17 tolerated(0.37) benign(0.057) TCGA-2H-A9GL-01 10 125528145 125528145 T C CPXM2 Missense_Mutation p.E399G 0.39 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 10 129866416 129866416 G T PTPRE Missense_Mutation p.R291S 0.36 deleterious(0) possibly_damaging(0.783) TCGA-2H-A9GL-01 10 133955458 133955458 G C JAKMIP3 Missense_Mutation p.R503P 0.14 deleterious(0.03) probably_damaging(0.986) TCGA-2H-A9GL-01 10 18250769 18250769 A T SLC39A12 Missense_Mutation p.Y174F 0.50 deleterious(0.01) possibly_damaging(0.501) TCGA-2H-A9GL-01 10 18289737 18289737 A T SLC39A12 Missense_Mutation p.E581V 0.63 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 10 53459344 53459344 T C CSTF2T 5'UTR 0.21 TCGA-2H-A9GL-01 10 55582963 55582963 T C PCDH15 Missense_Mutation p.K1510R 0.38 tolerated_low_confidence(0.14) benign(0.022) TCGA-2H-A9GL-01 10 55755405 55755405 T C PCDH15 Intron 0.39 TCGA-2H-A9GL-01 10 55973754 55973754 A G PCDH15 Missense_Mutation p.L347P 0.44 deleterious(0) probably_damaging(0.984) TCGA-2H-A9GL-01 10 70696800 70696800 C T DDX50 Silent p.H568H 0.31 TCGA-2H-A9GL-01 10 79566671 79566671 C A DLG5 Silent p.R1604R 0.25 TCGA-2H-A9GL-01 10 855709 855709 C T LARP4B 3'UTR 0.56 TCGA-2H-A9GL-01 10 90528548 90528548 G C LIPN Splice_Site p.X179_splice 0.36 TCGA-2H-A9GL-01 10 99330311 99330311 G A UBTD1 3'UTR 0.42 TCGA-2H-A9GL-01 11 1016198 1016200 AGA - MUC6 In_Frame_Del p.S2201del 0.40 TCGA-2H-A9GL-01 11 114577404 114577404 T C NXPE2 Silent p.L478L 0.10 TCGA-2H-A9GL-01 11 115061610 115061610 G C CADM1 Intron 0.57 TCGA-2H-A9GL-01 11 118889449 118889449 C A TRAPPC4 5'UTR 0.21 TCGA-2H-A9GL-01 11 121986690 121986690 A T BLID 5'UTR 0.32 TCGA-2H-A9GL-01 11 123489864 123489864 A G GRAMD1B Missense_Mutation p.K687E 0.20 deleterious(0.02) benign(0.342) TCGA-2H-A9GL-01 11 126873697 126873697 A C KIRREL3 5'Flank 0.16 TCGA-2H-A9GL-01 11 32460672 32460672 C G WT1 5'Flank 0.17 TCGA-2H-A9GL-01 11 33565560 33565560 A C KIAA1549L Missense_Mutation p.E520D 0.37 tolerated_low_confidence(0.09) benign(0.159) TCGA-2H-A9GL-01 11 36615296 36615296 G T RAG2 Silent p.S141S 0.40 TCGA-2H-A9GL-01 11 40137493 40137493 A C LRRC4C Missense_Mutation p.I117S 0.20 tolerated(0.12) benign(0.237) TCGA-2H-A9GL-01 11 4790663 4790663 A C OR51F1 Missense_Mutation p.L162R 0.21 tolerated(0.12) probably_damaging(0.928) TCGA-2H-A9GL-01 11 5274579 5274579 G C HBG2 Silent p.T124T 0.41 TCGA-2H-A9GL-01 11 55340225 55340225 A G OR4C16 Missense_Mutation p.S208G 0.34 tolerated(0.1) benign(0.075) TCGA-2H-A9GL-01 11 55873364 55873364 T G OR8H2 Missense_Mutation p.I282M 0.37 deleterious(0.01) probably_damaging(0.973) TCGA-2H-A9GL-01 11 62434850 62434850 C T METTL12 3'UTR 0.21 TCGA-2H-A9GL-01 11 65267814 65267814 G A MALAT1 RNA 0.40 TCGA-2H-A9GL-01 11 76371138 76371138 C T LRRC32 Missense_Mutation p.G500D 0.25 deleterious(0.01) possibly_damaging(0.607) TCGA-2H-A9GL-01 11 84245625 84245625 A C DLG2 Missense_Mutation p.I169M 0.42 deleterious(0) possibly_damaging(0.483) TCGA-2H-A9GL-01 11 88583156 88583156 A C GRM5 Missense_Mutation p.F277V 0.41 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 11 92498156 92498156 T G FAT3 Missense_Mutation p.F1366V 0.46 benign(0.313) TCGA-2H-A9GL-01 11 94801686 94801686 A G SRSF8 3'UTR 0.35 TCGA-2H-A9GL-01 11 96126195 96126195 T A JRKL 3'UTR 0.12 TCGA-2H-A9GL-01 12 120750388 120750388 G A SIRT4 Silent p.E209E 0.24 TCGA-2H-A9GL-01 12 20876179 20876179 T G SLCO1C1 Missense_Mutation p.F393V 0.57 deleterious(0.01) possibly_damaging(0.7) TCGA-2H-A9GL-01 12 21971136 21971136 C A ABCC9 Missense_Mutation p.S1240I 0.16 tolerated(0.41) benign(0.001) TCGA-2H-A9GL-01 12 27944734 27944734 T G KLHL42 Missense_Mutation p.D322E 0.09 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GL-01 12 31632565 31632565 T G DENND5B Missense_Mutation p.T288P 0.11 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GL-01 12 40114586 40114586 T C C12orf40 Intron 0.20 TCGA-2H-A9GL-01 12 49359305 49359305 G C WNT10B 3'UTR 0.38 TCGA-2H-A9GL-01 12 49445150 49445150 G C KMT2D Silent p.P772P 0.50 TCGA-2H-A9GL-01 12 52865858 52865858 G C KRT6C Silent p.L249L 0.54 TCGA-2H-A9GL-01 12 53162437 53162437 G A KRT76 3'UTR 0.11 TCGA-2H-A9GL-01 12 53454737 53454737 C G TENC1 Missense_Mutation p.P1026R 0.07 tolerated(0.07) possibly_damaging(0.867) TCGA-2H-A9GL-01 12 85517961 85517961 A T LRRIQ1 Missense_Mutation p.K1224M 0.27 deleterious(0.01) possibly_damaging(0.789) TCGA-2H-A9GL-01 12 89745661 89745661 C T DUSP6 Silent p.S52S 0.15 TCGA-2H-A9GL-01 12 9004924 9004924 T C A2ML1 Missense_Mutation p.V861A 0.22 tolerated(0.31) benign(0.003) TCGA-2H-A9GL-01 13 106142176 106142176 G T DAOA Intron 0.45 TCGA-2H-A9GL-01 13 107822984 107822984 C T FAM155A Missense_Mutation p.C413Y 0.16 deleterious(0.03) possibly_damaging(0.714) TCGA-2H-A9GL-01 13 23853606 23853606 T G SGCG Missense_Mutation p.L165R 0.32 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 13 24995335 24995335 G A PARP4 Silent p.A1699A 0.38 TCGA-2H-A9GL-01 13 30782544 30782544 G A KATNAL1 3'UTR 0.18 TCGA-2H-A9GL-01 13 33700340 33700340 C A STARD13 Missense_Mutation p.D654Y 0.36 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 13 36347334 36347334 T C DCLK1 3'UTR 0.29 TCGA-2H-A9GL-01 13 36521533 36521533 T G DCLK1 Missense_Mutation p.K262T 0.08 deleterious(0) unknown(0) TCGA-2H-A9GL-01 13 37011833 37011833 T A CCNA1 Missense_Mutation p.L122H 0.52 deleterious(0.04) possibly_damaging(0.778) TCGA-2H-A9GL-01 13 38154722 38154722 T G POSTN Missense_Mutation p.K502T 0.42 tolerated(0.19) benign(0.001) TCGA-2H-A9GL-01 13 73650497 73650498 - T KLF5 3'UTR 0.32 TCGA-2H-A9GL-01 13 84455809 84455809 C A SLITRK1 5'UTR 0.40 TCGA-2H-A9GL-01 13 88329367 88329367 A G SLITRK5 Missense_Mutation p.K575R 0.78 deleterious(0.04) possibly_damaging(0.842) TCGA-2H-A9GL-01 13 94482410 94482410 T G GPC6 Missense_Mutation p.F108C 0.35 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GL-01 14 102028653 102028653 G A DIO3 Missense_Mutation p.G274S 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GL-01 14 105268139 105268139 A T ZBTB42 Missense_Mutation p.H202L 0.12 tolerated(0.21) benign(0.001) TCGA-2H-A9GL-01 14 105408695 105408695 T C AHNAK2 Missense_Mutation p.K4365E 0.04 probably_damaging(0.922) TCGA-2H-A9GL-01 14 105408717 105408717 G T AHNAK2 Silent p.V4357V 0.48 TCGA-2H-A9GL-01 14 105409103 105409103 C A AHNAK2 Missense_Mutation p.V4229L 0.15 probably_damaging(0.97) TCGA-2H-A9GL-01 14 105409629 105409629 C G AHNAK2 Missense_Mutation p.K4053N 0.24 probably_damaging(0.994) TCGA-2H-A9GL-01 14 23886717 23886717 C T MYH7 Missense_Mutation p.D1450N 0.36 deleterious(0.04) possibly_damaging(0.86) TCGA-2H-A9GL-01 14 24045177 24045177 G A JPH4 Missense_Mutation p.R290W 0.36 deleterious(0.01) probably_damaging(0.958) TCGA-2H-A9GL-01 14 52196781 52196781 A C FRMD6 3'Flank 0.44 TCGA-2H-A9GL-01 14 57696600 57696600 C T EXOC5 Splice_Site p.X383_splice 0.15 TCGA-2H-A9GL-01 14 79746672 79746672 G A NRXN3 Intron 0.29 TCGA-2H-A9GL-01 14 80669192 80669192 A C DIO2 Missense_Mutation p.I257R 0.53 tolerated(0.15) benign(0.019) TCGA-2H-A9GL-01 14 86090619 86090619 A G FLRT2 3'UTR 0.39 TCGA-2H-A9GL-01 14 86091771 86091771 T G FLRT2 3'UTR 0.33 TCGA-2H-A9GL-01 14 89629287 89629287 C T FOXN3 Missense_Mutation p.R315Q 0.59 tolerated(0.27) possibly_damaging(0.709) TCGA-2H-A9GL-01 15 23412175 23412175 A C RP11-467N20.5 Silent p.T94T 0.71 TCGA-2H-A9GL-01 15 24922810 24922810 C A NPAP1 Missense_Mutation p.S599Y 0.29 deleterious(0.01) probably_damaging(0.967) TCGA-2H-A9GL-01 15 26789048 26789048 G A GABRB3 3'UTR 0.83 TCGA-2H-A9GL-01 15 35529586 35529586 A G ANP32AP1 RNA 0.84 TCGA-2H-A9GL-01 15 66995607 66995607 C - SMAD6 Frame_Shift_Del p.K5Nfs*59 0.46 TCGA-2H-A9GL-01 15 67479750 67479750 G T SMAD3 Missense_Mutation p.A353S 0.26 tolerated(0.71) benign(0.002) TCGA-2H-A9GL-01 15 68061972 68061972 G A MAP2K5 Silent p.S389S 0.23 TCGA-2H-A9GL-01 15 83424704 83424704 C T FSD2 3'UTR 0.20 TCGA-2H-A9GL-01 15 89070882 89070882 G A DET1 Nonsense_Mutation p.Q418* 0.29 TCGA-2H-A9GL-01 16 5135190 5135190 G C FAM86A 3'UTR 0.19 TCGA-2H-A9GL-01 16 70187460 70187460 G C PDPR Missense_Mutation p.R740P 0.08 deleterious(0.01) possibly_damaging(0.859) TCGA-2H-A9GL-01 17 16638500 16638500 T C CCDC144A Missense_Mutation p.L972P 0.58 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GL-01 17 33353417 33353417 A G RFFL Silent p.A52A 0.13 TCGA-2H-A9GL-01 17 42266601 42266601 C T TMUB2 Missense_Mutation p.H83Y 0.11 tolerated(0.18) possibly_damaging(0.899) TCGA-2H-A9GL-01 17 42474987 42474987 G C GPATCH8 Missense_Mutation p.H1486Q 0.57 deleterious(0.03) unknown(0) TCGA-2H-A9GL-01 17 59147352 59147352 C T BCAS3 Intron 0.19 TCGA-2H-A9GL-01 17 60879042 60879042 G A MARCH10 Missense_Mutation p.R19W 0.19 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GL-01 17 72537567 72537567 A C CD300C 3'UTR 0.42 TCGA-2H-A9GL-01 17 7577511 7577512 - G TP53 Frame_Shift_Ins p.L257Pfs*7 0.41 TCGA-2H-A9GL-01 17 80708330 80708330 T C FN3K Missense_Mutation p.V210A 0.36 tolerated(0.1) benign(0.091) TCGA-2H-A9GL-01 17 9837516 9837516 G A GAS7 Silent p.D284D 0.38 TCGA-2H-A9GL-01 18 19996550 19996550 T A CTAGE1 Nonsense_Mutation p.K409* 0.27 TCGA-2H-A9GL-01 18 31319382 31319382 T C ASXL3 Missense_Mutation p.F672L 0.82 benign(0) TCGA-2H-A9GL-01 18 35145420 35145420 G A CELF4 Missense_Mutation p.P62L 0.08 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 18 42281628 42281628 A G SETBP1 Missense_Mutation p.K106R 0.08 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GL-01 18 55033642 55033642 T C ST8SIA3 3'UTR 0.09 TCGA-2H-A9GL-01 18 58039408 58039408 A C MC4R Missense_Mutation p.L59V 0.88 tolerated(0.15) probably_damaging(0.978) TCGA-2H-A9GL-01 19 11796889 11796889 C T ZNF833P RNA 0.71 TCGA-2H-A9GL-01 19 12186947 12186947 G C ZNF844 Missense_Mutation p.E338Q 0.11 tolerated(0.05) probably_damaging(0.913) TCGA-2H-A9GL-01 19 19656652 19656652 G A CILP2 Missense_Mutation p.V1100I 0.86 tolerated(0.15) benign(0.007) TCGA-2H-A9GL-01 19 23328839 23328839 A C ZNF730 Missense_Mutation p.K331N 0.87 deleterious(0.03) probably_damaging(0.987) TCGA-2H-A9GL-01 19 2807532 2807532 C A THOP1 Missense_Mutation p.P327T 0.09 tolerated(0.38) benign(0.001) TCGA-2H-A9GL-01 19 35258288 35258288 G T ZNF599 Silent p.I58I 0.33 TCGA-2H-A9GL-01 19 37676375 37676375 T C ZNF585B Silent p.K688K 0.83 TCGA-2H-A9GL-01 19 42593685 42593685 C G POU2F2 3'Flank 0.10 TCGA-2H-A9GL-01 19 47193865 47193884 TGGCCACTTCATTCCGGAGC - PRKD2 Frame_Shift_Del p.Q594Hfs*21 0.16 TCGA-2H-A9GL-01 19 47231922 47231922 G A STRN4 Missense_Mutation p.A331V 0.20 tolerated(0.07) benign(0.033) TCGA-2H-A9GL-01 19 50657898 50657898 A G IZUMO2 Silent p.S194S 0.19 TCGA-2H-A9GL-01 19 53210059 53210059 T G ZNF611 Missense_Mutation p.E83D 0.78 tolerated(0.06) probably_damaging(0.97) TCGA-2H-A9GL-01 19 53884868 53884868 C T ZNF525 Missense_Mutation p.R346C 0.45 deleterious(0) possibly_damaging(0.653) TCGA-2H-A9GL-01 19 54080368 54080368 A C ZNF331 Missense_Mutation p.K185T 0.86 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GL-01 19 55450465 55450465 G A NLRP7 Silent p.C574C 0.15 TCGA-2H-A9GL-01 19 677855 677855 T A FSTL3 Missense_Mutation p.V56D 0.73 deleterious(0) probably_damaging(0.981) TCGA-2H-A9GL-01 19 7697660 7697660 G T PCP2 Missense_Mutation p.D36E 0.19 tolerated(0.15) possibly_damaging(0.509) TCGA-2H-A9GL-01 19 7806043 7806043 G T CD209 3'UTR 0.79 TCGA-2H-A9GL-01 19 8587572 8587572 G A MYO1F Missense_Mutation p.P999L 0.80 tolerated(0.11) benign(0.002) TCGA-2H-A9GL-01 19 9085978 9085978 A C MUC16 Missense_Mutation p.V1946G 0.75 unknown(0) TCGA-2H-A9GL-01 19 9086331 9086331 T A MUC16 Silent p.T1828T 0.10 TCGA-2H-A9GL-01 19 9721259 9721259 T C ZNF561 Missense_Mutation p.S360G 0.83 deleterious(0) benign(0.111) TCGA-2H-A9GL-01 19 9763995 9763995 T G ZNF562 Missense_Mutation p.N304T 0.24 tolerated(0.98) benign(0.369) TCGA-2H-A9GL-01 1 107600103 107600103 C T PRMT6 Silent p.L256L 0.33 TCGA-2H-A9GL-01 1 108926114 108926114 A C NBPF6 Intron 0.51 TCGA-2H-A9GL-01 1 150938729 150938729 T C CERS2 Silent p.T346T 0.16 TCGA-2H-A9GL-01 1 156047381 156047381 G A MEX3A Missense_Mutation p.R183W 0.29 deleterious(0) probably_damaging(0.98) TCGA-2H-A9GL-01 1 158549548 158549548 A G OR10X1 Missense_Mutation p.F48L 0.40 tolerated(1) benign(0.008) TCGA-2H-A9GL-01 1 158583608 158583608 A G SPTA1 Missense_Mutation p.S2298P 0.46 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GL-01 1 159171924 159171924 C A CADM3 3'Flank 0.44 TCGA-2H-A9GL-01 1 16382972 16382972 G A CLCNKB Missense_Mutation p.G662D 0.20 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GL-01 1 17085018 17085018 A C MST1L RNA 0.06 TCGA-2H-A9GL-01 1 175067705 175067705 A G TNN Missense_Mutation p.K698R 0.61 tolerated(0.48) benign(0.03) TCGA-2H-A9GL-01 1 177249999 177249999 C G BRINP2 Missense_Mutation p.L563V 0.61 tolerated(0.26) probably_damaging(0.991) TCGA-2H-A9GL-01 1 1922389 1922389 C G C1orf222 Missense_Mutation p.D3H 0.11 deleterious(0) unknown(0) TCGA-2H-A9GL-01 1 196250003 196250003 A G KCNT2 Missense_Mutation p.L966P 0.58 tolerated(0.07) probably_damaging(0.972) TCGA-2H-A9GL-01 1 196643018 196643018 T A CFH Silent p.P92P 0.26 TCGA-2H-A9GL-01 1 207143612 207143612 G A FCAMR 5'UTR 0.20 TCGA-2H-A9GL-01 1 211546148 211546148 A G TRAF5 3'UTR 0.36 TCGA-2H-A9GL-01 1 225156468 225156468 A G DNAH14 Missense_Mutation p.N220S 0.38 tolerated(0.18) benign(0.013) TCGA-2H-A9GL-01 1 228487826 228487826 C T OBSCN Missense_Mutation p.S4573L 0.12 probably_damaging(0.993) TCGA-2H-A9GL-01 1 232551284 232551284 C A SIPA1L2 Missense_Mutation p.G1573V 0.17 deleterious(0) probably_damaging(0.918) TCGA-2H-A9GL-01 1 233397060 233397060 G T PCNXL2 Nonsense_Mutation p.S163* 0.20 TCGA-2H-A9GL-01 1 236433178 236433178 G C ERO1LB Nonsense_Mutation p.Y73* 0.14 TCGA-2H-A9GL-01 1 236719125 236719125 A C HEATR1 Missense_Mutation p.F1877V 0.32 deleterious(0) possibly_damaging(0.61) TCGA-2H-A9GL-01 1 236906263 236906263 A C ACTN2 Missense_Mutation p.E392A 0.41 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GL-01 1 237659920 237659920 A C RYR2 Missense_Mutation p.T691P 0.37 probably_damaging(0.925) TCGA-2H-A9GL-01 1 247265093 247265093 C A ZNF669 Missense_Mutation p.G130V 0.30 deleterious(0) probably_damaging(0.929) TCGA-2H-A9GL-01 1 248436926 248436926 A C OR2T33 Missense_Mutation p.L64R 0.25 deleterious(0) probably_damaging(0.953) TCGA-2H-A9GL-01 1 32207476 32207476 C G BAI2 Missense_Mutation p.A504P 0.20 deleterious(0.02) probably_damaging(0.935) TCGA-2H-A9GL-01 1 34666611 34666611 A C C1orf94 Missense_Mutation p.E416D 0.71 tolerated(0.49) benign(0.078) TCGA-2H-A9GL-01 1 37267513 37267513 C T GRIK3 Missense_Mutation p.R900H 0.63 deleterious_low_confidence(0) possibly_damaging(0.72) TCGA-2H-A9GL-01 1 38265722 38265722 G C MANEAL Missense_Mutation p.W407C 0.25 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GL-01 1 39991161 39991161 G C BMP8A Intron 0.24 TCGA-2H-A9GL-01 1 43610876 43610876 T C FAM183A 5'Flank 0.24 TCGA-2H-A9GL-01 1 45221617 45221617 T C KIF2C Missense_Mutation p.I259T 0.10 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GL-01 1 53554562 53554573 TCCCGGGCAAAA - SLC1A7 In_Frame_Del p.F481_D484del 0.11 TCGA-2H-A9GL-01 1 62677192 62677192 A G L1TD1 3'UTR 0.75 TCGA-2H-A9GL-01 1 65332731 65332731 A G JAK1 Missense_Mutation p.Y270H 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GL-01 1 67816572 67816572 C G IL12RB2 Missense_Mutation p.A353G 0.12 deleterious(0) probably_damaging(0.977) TCGA-2H-A9GL-01 1 75037276 75037276 T C C1orf173 Missense_Mutation p.N1373S 0.16 deleterious(0.04) benign(0.291) TCGA-2H-A9GL-01 1 75038064 75038064 T A C1orf173 Missense_Mutation p.R1110S 0.54 tolerated(0.09) benign(0.019) TCGA-2H-A9GL-01 1 79387436 79387436 C T ELTD1 Nonsense_Mutation p.W373* 0.55 TCGA-2H-A9GL-01 1 79404882 79404882 A C ELTD1 Silent p.T129T 0.52 TCGA-2H-A9GL-01 20 23856593 23856593 A G CST5 3'UTR 0.21 TCGA-2H-A9GL-01 20 24565587 24565587 C T SYNDIG1 Silent p.C192C 0.29 TCGA-2H-A9GL-01 20 3005237 3005237 C T PTPRA Silent p.T528T 0.11 TCGA-2H-A9GL-01 20 30432968 30432968 G A FOXS1 Silent p.P126P 0.16 TCGA-2H-A9GL-01 20 30720890 30720898 GCCTATCAA CAC TM9SF4 In_Frame_Del p.P31_N33delinsT 0.19 TCGA-2H-A9GL-01 20 33329232 33329232 C T NCOA6 Missense_Mutation p.A1610T 0.46 benign(0.089) TCGA-2H-A9GL-01 20 33862215 33862215 C T MMP24 Missense_Mutation p.R581W 0.31 deleterious(0.01) possibly_damaging(0.825) TCGA-2H-A9GL-01 20 34022031 34022031 C T GDF5 Silent p.K394K 0.21 TCGA-2H-A9GL-01 20 40702049 40702049 T G PTPRT 3'UTR 0.24 TCGA-2H-A9GL-01 20 40702153 40702153 T C PTPRT 3'UTR 0.22 TCGA-2H-A9GL-01 20 44144216 44144216 C G SPINT3 Silent p.L11L 0.17 TCGA-2H-A9GL-01 20 45354893 45354893 A C SLC2A10 Silent p.A406A 0.06 TCGA-2H-A9GL-01 20 4833918 4833918 A T SLC23A2 3'UTR 0.20 TCGA-2H-A9GL-01 20 60888740 60888740 C T LAMA5 Missense_Mutation p.V2875I 0.36 benign(0.13) TCGA-2H-A9GL-01 20 62365093 62365093 T C ZGPAT Splice_Site p.X291_splice 0.15 TCGA-2H-A9GL-01 20 62571550 62571550 G A UCKL1 Missense_Mutation p.A507V 0.11 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GL-01 20 8782721 8782724 TTCT - PLCB1 Intron 0.12 TCGA-2H-A9GL-01 21 31655245 31655245 A G KRTAP24-1 Silent p.P2P 0.27 TCGA-2H-A9GL-01 22 18846026 18846026 C A BCRP7 RNA 0.07 TCGA-2H-A9GL-01 22 28395242 28395242 A C TTC28 Missense_Mutation p.L1469V 0.33 tolerated(0.55) benign(0.004) TCGA-2H-A9GL-01 22 47108089 47108089 C A CERK Missense_Mutation p.A161S 0.12 deleterious(0) probably_damaging(0.992) TCGA-2H-A9GL-01 22 50927478 50927478 G A MIOX Missense_Mutation p.V140I 0.25 deleterious(0) possibly_damaging(0.866) TCGA-2H-A9GL-01 2 113998955 113998955 C A PAX8 Intron 0.20 TCGA-2H-A9GL-01 2 149247238 149247238 A C MBD5 Missense_Mutation p.Q1113P 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-2H-A9GL-01 2 149633291 149633291 C T KIF5C Silent p.G35G 0.28 TCGA-2H-A9GL-01 2 172950324 172950333 CCTTCCTGTC - DLX1 5'UTR 0.23 TCGA-2H-A9GL-01 2 172954082 172954082 G A DLX1 3'UTR 0.21 TCGA-2H-A9GL-01 2 179433705 179433705 A C TTN Missense_Mutation p.S25718R 0.26 TCGA-2H-A9GL-01 2 179434236 179434236 T G TTN Missense_Mutation p.E25541D 0.54 TCGA-2H-A9GL-01 2 20147936 20147936 T A WDR35 Missense_Mutation p.I516L 0.38 tolerated(1) benign(0.002) TCGA-2H-A9GL-01 2 202254099 202254099 G A TRAK2 Missense_Mutation p.P441S 0.11 tolerated(0.31) probably_damaging(0.983) TCGA-2H-A9GL-01 2 207169788 207169789 - C ZDBF2 Frame_Shift_Ins p.V182Sfs*4 0.35 TCGA-2H-A9GL-01 2 207530608 207530608 T G DYTN Silent p.R376R 0.07 TCGA-2H-A9GL-01 2 210595014 210595014 C T MAP2 Nonsense_Mutation p.R1793* 0.49 TCGA-2H-A9GL-01 2 211302544 211302544 A G LANCL1 Missense_Mutation p.V248A 0.28 deleterious(0.04) possibly_damaging(0.757) TCGA-2H-A9GL-01 2 211525224 211525224 T A CPS1 Missense_Mutation p.L1264M 0.29 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 2 212242981 212242981 G A ERBB4 3'UTR 0.47 TCGA-2H-A9GL-01 2 212242982 212242982 C A ERBB4 3'UTR 0.47 TCGA-2H-A9GL-01 2 213867409 213867409 T G IKZF2 3'UTR 0.09 TCGA-2H-A9GL-01 2 222284094 222284094 A G EPHA4 3'UTR 0.17 TCGA-2H-A9GL-01 2 238725989 238725990 - T RBM44 Frame_Shift_Ins p.N147* 0.58 TCGA-2H-A9GL-01 2 24046176 24046176 G A ATAD2B Nonsense_Mutation p.Q695* 0.12 TCGA-2H-A9GL-01 2 24239739 24239739 C T MFSD2B Silent p.I124I 0.36 TCGA-2H-A9GL-01 2 40342680 40342680 A G SLC8A1 Missense_Mutation p.F879L 0.31 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 2 80531345 80531345 G A LRRTM1 5'UTR 0.43 TCGA-2H-A9GL-01 2 87001986 87001986 A C RMND5A 3'UTR 0.49 TCGA-2H-A9GL-01 2 89265990 89265990 T G IGKV1-6 Missense_Mutation p.S48R 0.54 deleterious(0.01) benign(0.414) TCGA-2H-A9GL-01 3 100523655 100523655 T G ABI3BP Missense_Mutation p.E576D 0.55 tolerated(0.39) benign(0.021) TCGA-2H-A9GL-01 3 111603396 111603396 C A PHLDB2 Missense_Mutation p.H158N 0.43 deleterious(0.03) benign(0.011) TCGA-2H-A9GL-01 3 111842603 111842603 G C GCSAM Missense_Mutation p.T81S 0.25 tolerated(1) benign(0.344) TCGA-2H-A9GL-01 3 122146408 122146408 C T KPNA1 Missense_Mutation p.C469Y 0.39 deleterious(0.03) possibly_damaging(0.735) TCGA-2H-A9GL-01 3 126260888 126260888 C T CHST13 Missense_Mutation p.R165C 0.22 deleterious(0) probably_damaging(0.988) TCGA-2H-A9GL-01 3 133377885 133377885 C A TOPBP1 Missense_Mutation p.G65V 0.21 deleterious(0) probably_damaging(0.967) TCGA-2H-A9GL-01 3 147132008 147132008 T G ZIC1 3'UTR 0.33 TCGA-2H-A9GL-01 3 164735779 164735779 A C SI Missense_Mutation p.L1167V 0.45 deleterious(0) possibly_damaging(0.452) TCGA-2H-A9GL-01 3 171904580 171904580 T C FNDC3B Intron 0.60 TCGA-2H-A9GL-01 3 182662556 182662556 G A DCUN1D1 3'UTR 0.55 TCGA-2H-A9GL-01 3 183689562 183689562 T A ABCC5 Missense_Mutation p.K517I 0.38 tolerated(0.08) benign(0.017) TCGA-2H-A9GL-01 3 183896816 183896816 C G AP2M1 Silent p.L82L 0.24 TCGA-2H-A9GL-01 3 195934293 195934293 C T ZDHHC19 Silent p.S221S 0.09 TCGA-2H-A9GL-01 3 3098196 3098206 TTTTATAGAAT - CNTN4 3'UTR 0.40 TCGA-2H-A9GL-01 3 3139642 3139642 C A IL5RA Silent p.G207G 0.20 TCGA-2H-A9GL-01 3 33584956 33584956 T A CLASP2 Missense_Mutation p.T1133S 0.42 tolerated(0.07) possibly_damaging(0.733) TCGA-2H-A9GL-01 3 52818319 52818319 G A ITIH1 Silent p.T411T 0.56 TCGA-2H-A9GL-01 3 55543067 55543067 A G ERC2 3'UTR 0.40 TCGA-2H-A9GL-01 3 55922476 55922476 C T ERC2 Silent p.A835A 0.30 TCGA-2H-A9GL-01 3 77695786 77695786 G A ROBO2 3'UTR 0.20 TCGA-2H-A9GL-01 3 9482266 9482266 G A SETD5 Missense_Mutation p.A232T 0.29 tolerated(0.06) benign(0.215) TCGA-2H-A9GL-01 3 97806246 97806246 C A OR5AC2 Missense_Mutation p.T77N 0.16 deleterious(0.01) benign(0.284) TCGA-2H-A9GL-01 3 9948053 9948053 C G IL17RE Missense_Mutation p.Q92E 0.27 tolerated(0.06) benign(0.004) TCGA-2H-A9GL-01 4 122782808 122782808 C T BBS7 Silent p.P64P 0.71 TCGA-2H-A9GL-01 4 140811438 140811438 G T MAML3 Silent p.P384P 0.30 TCGA-2H-A9GL-01 4 174216555 174216555 A C GALNT7 Missense_Mutation p.K255Q 0.26 deleterious(0.03) benign(0.261) TCGA-2H-A9GL-01 4 48996726 48996726 C A CWH43 Missense_Mutation p.A201D 0.78 deleterious(0) probably_damaging(0.989) TCGA-2H-A9GL-01 4 62813834 62813834 T C LPHN3 Missense_Mutation p.F814S 0.76 tolerated(0.07) probably_damaging(1) TCGA-2H-A9GL-01 4 68919202 68919202 T C TMPRSS11F 3'UTR 0.74 TCGA-2H-A9GL-01 4 737326 737326 G A PCGF3 Silent p.K109K 0.83 TCGA-2H-A9GL-01 4 98480236 98480236 A G STPG2 Silent p.I451I 0.32 TCGA-2H-A9GL-01 5 101572693 101572693 A C SLCO4C1 Missense_Mutation p.F682V 0.71 deleterious(0) possibly_damaging(0.719) TCGA-2H-A9GL-01 5 137426987 137426987 T G WNT8A 3'UTR 0.16 TCGA-2H-A9GL-01 5 140236574 140236574 C G PCDHA10 Missense_Mutation p.T314S 0.15 tolerated_low_confidence(0.53) benign(0.012) TCGA-2H-A9GL-01 5 149900889 149900889 A T NDST1 Missense_Mutation p.I25F 0.90 tolerated_low_confidence(0.1) benign(0.112) TCGA-2H-A9GL-01 5 156186505 156186505 C G SGCD 3'UTR 0.19 TCGA-2H-A9GL-01 5 174870234 174870234 G T DRD1 5'UTR 0.74 TCGA-2H-A9GL-01 5 180035200 180035200 A G FLT4 Intron 0.27 TCGA-2H-A9GL-01 5 35876525 35876525 T G IL7R Silent p.T439T 0.21 TCGA-2H-A9GL-01 5 36104040 36104048 TTGACACTT - LMBRD2 3'UTR 0.26 TCGA-2H-A9GL-01 5 37020917 37020917 A T NIPBL Missense_Mutation p.I1756F 0.10 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GL-01 5 37381711 37381711 A T WDR70 Missense_Mutation p.K33N 0.10 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 5 40767767 40767767 T C PRKAA1 Missense_Mutation p.I223V 0.12 tolerated(1) benign(0.327) TCGA-2H-A9GL-01 5 52385789 52385789 T G ITGA2 Missense_Mutation p.I1121R 0.08 deleterious(0) probably_damaging(0.91) TCGA-2H-A9GL-01 5 72386032 72386032 T G FCHO2 3'UTR 0.05 TCGA-2H-A9GL-01 6 128643411 128643411 T G PTPRK Missense_Mutation p.K90Q 0.11 tolerated(0.12) benign(0.161) TCGA-2H-A9GL-01 6 136581831 136581831 G C BCLAF1 3'UTR 0.39 TCGA-2H-A9GL-01 6 152631081 152631081 C A SYNE1 Silent p.R5697R 0.60 TCGA-2H-A9GL-01 6 152738095 152738095 T C SYNE1 Missense_Mutation p.H1826R 0.18 benign(0.101) TCGA-2H-A9GL-01 6 165713939 165713939 A G C6orf118 Missense_Mutation p.F264L 0.18 tolerated(0.35) benign(0.047) TCGA-2H-A9GL-01 6 21597762 21597762 T C SOX4 3'UTR 0.25 TCGA-2H-A9GL-01 6 22290493 22290493 T C PRL Silent p.Q134Q 0.30 TCGA-2H-A9GL-01 6 2890433 2890433 G C SERPINB9 Missense_Mutation p.N365K 0.30 tolerated(0.53) benign(0.33) TCGA-2H-A9GL-01 6 33541885 33541885 G A BAK1 Nonsense_Mutation p.Q153* 0.55 TCGA-2H-A9GL-01 6 39054624 39054624 G A GLP1R 3'UTR 0.22 TCGA-2H-A9GL-01 6 47846773 47846773 T C PTCHD4 Missense_Mutation p.I603V 0.21 tolerated(0.54) possibly_damaging(0.833) TCGA-2H-A9GL-01 6 55620351 55620351 G A BMP5 Missense_Mutation p.R449C 0.05 deleterious(0) probably_damaging(0.977) TCGA-2H-A9GL-01 6 57244771 57244771 T C PRIM2 Silent p.L178L 0.10 TCGA-2H-A9GL-01 6 64423644 64423644 T G PHF3 3'UTR 0.36 TCGA-2H-A9GL-01 6 87725488 87725488 G A HTR1E Missense_Mutation p.V146I 0.30 deleterious(0.03) probably_damaging(0.958) TCGA-2H-A9GL-01 6 88854515 88854515 G A CNR1 Missense_Mutation p.A160V 0.14 deleterious(0) probably_damaging(1) TCGA-2H-A9GL-01 7 123672074 123672074 G T TMEM229A Silent p.L328L 0.58 TCGA-2H-A9GL-01 7 134701889 134701889 G C AGBL3 Missense_Mutation p.V133L 0.09 tolerated(0.05) benign(0.161) TCGA-2H-A9GL-01 7 138341216 138341216 C T SVOPL Missense_Mutation p.G171S 0.22 deleterious(0.04) possibly_damaging(0.85) TCGA-2H-A9GL-01 7 143657084 143657084 T C OR2F1 Silent p.T7T 0.13 TCGA-2H-A9GL-01 7 151843811 151843811 T A KMT2C Missense_Mutation p.D4635V 0.22 probably_damaging(0.949) TCGA-2H-A9GL-01 7 20180560 20180560 G A MACC1 3'UTR 0.38 TCGA-2H-A9GL-01 7 27191291 27191300 GGCTGAATTA - HOXA7 3'Flank 0.24 TCGA-2H-A9GL-01 7 33644812 33644812 T G BBS9 Missense_Mutation p.S880A 0.38 tolerated_low_confidence(0.4) benign(0.001) TCGA-2H-A9GL-01 7 38389152 38389152 C A TRGV5 Missense_Mutation p.W53L 0.30 tolerated(0.12) probably_damaging(0.973) TCGA-2H-A9GL-01 7 4169634 4169634 A G SDK1 Missense_Mutation p.K1345R 0.44 deleterious(0) possibly_damaging(0.895) TCGA-2H-A9GL-01 7 50344469 50344469 T C IKZF1 5'Flank 0.33 TCGA-2H-A9GL-01 7 56067789 56067789 C T GBAS 3'UTR 0.52 TCGA-2H-A9GL-01 7 64438174 64438174 T G ZNF117 3'UTR 0.28 TCGA-2H-A9GL-01 7 72657293 72657293 T C GTF2IRD2P1 RNA 0.25 TCGA-2H-A9GL-01 7 82580660 82580660 A G PCLO Silent p.L3082L 0.09 TCGA-2H-A9GL-01 7 86824792 86824792 T G DMTF1 3'UTR 0.20 TCGA-2H-A9GL-01 7 87160797 87160797 A G ABCB1 Missense_Mutation p.L833P 0.22 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GL-01 8 105025817 105025817 A G RIMS2 Silent p.G1064G 0.56 TCGA-2H-A9GL-01 8 10755427 10755427 C G XKR6 3'UTR 0.33 TCGA-2H-A9GL-01 8 110980794 110980794 A G KCNV1 Silent p.C342C 0.25 TCGA-2H-A9GL-01 8 1497822 1497822 C T DLGAP2 Silent p.P321P 0.35 TCGA-2H-A9GL-01 8 15480646 15480646 T C TUSC3 Missense_Mutation p.F66L 0.05 tolerated(0.23) benign(0.007) TCGA-2H-A9GL-01 8 3009021 3009021 T C CSMD1 Missense_Mutation p.T1977A 0.43 benign(0.197) TCGA-2H-A9GL-01 8 32611911 32611911 A C NRG1 Missense_Mutation p.K246T 0.47 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GL-01 8 68934344 68934346 ACA CC PREX2 Frame_Shift_Del p.N137Tfs*3 0.29 TCGA-2H-A9GL-01 8 72987746 72987746 A T TRPA1 5'UTR 0.26 TCGA-2H-A9GL-01 8 95704982 95704982 C G ESRP1 Missense_Mutation p.T633R 0.11 tolerated(0.05) benign(0.004) TCGA-2H-A9GL-01 9 102628296 102628296 C G NR4A3 3'UTR 0.16 TCGA-2H-A9GL-01 9 119568025 119568025 T C ASTN2 Missense_Mutation p.K710R 0.79 deleterious(0.01) unknown(0) TCGA-2H-A9GL-01 9 132375866 132375866 G A C9orf50 Silent p.S297S 0.21 TCGA-2H-A9GL-01 9 13431273 13431273 G A RP11-536O18.2 RNA 0.12 TCGA-2H-A9GL-01 9 137623929 137623929 C T COL5A1 Missense_Mutation p.R449W 0.12 probably_damaging(0.984) TCGA-2H-A9GL-01 9 35107913 35107913 T C FAM214B Missense_Mutation p.H120R 0.05 deleterious(0.03) probably_damaging(0.989) TCGA-2H-A9GL-01 9 732675 732675 T G KANK1 Intron 0.39 TCGA-2H-A9GL-01 9 96080159 96080159 C T WNK2 Silent p.G2248G 0.96 TCGA-2H-A9GL-01 9 98774580 98774580 G A ERCC6L2 Missense_Mutation p.A222T 0.26 tolerated(0.09) benign(0.432) TCGA-2H-A9GL-01 X 101381791 101381791 G T TCEAL2 5'UTR 0.74 TCGA-2H-A9GL-01 X 114426914 114426914 T G RBMXL3 Missense_Mutation p.S970R 0.24 tolerated_low_confidence(0.09) benign(0.307) TCGA-2H-A9GL-01 X 125685850 125685850 T C DCAF12L1 Missense_Mutation p.R248G 0.90 tolerated(0.27) benign(0.044) TCGA-2H-A9GL-01 X 129191438 129191438 T - BCORL1 3'UTR 0.25 TCGA-2H-A9GL-01 X 131212756 131212756 T A FRMD7 Missense_Mutation p.N430I 0.71 deleterious(0.01) benign(0.015) TCGA-2H-A9GL-01 X 13338067 13338067 G A ATXN3L 5'UTR 0.63 TCGA-2H-A9GL-01 X 149638884 149638884 C A MAMLD1 Missense_Mutation p.H322N 0.71 deleterious(0.02) probably_damaging(0.994) TCGA-2H-A9GL-01 X 150780178 150780178 A G PASD1 Missense_Mutation p.I54V 0.14 deleterious(0) possibly_damaging(0.847) TCGA-2H-A9GL-01 X 150842603 150842603 A C PASD1 Missense_Mutation p.N707T 0.96 deleterious(0.01) possibly_damaging(0.607) TCGA-2H-A9GL-01 X 37029016 37029016 C T FAM47C Missense_Mutation p.R845C 0.70 tolerated(0.13) benign(0.01) TCGA-2H-A9GL-01 X 47044965 47044965 G T RBM10 Missense_Mutation p.C764F 0.47 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GL-01 X 5827149 5827149 A G NLGN4X Missense_Mutation p.S253P 0.12 deleterious(0.02) probably_damaging(0.992) TCGA-2H-A9GL-01 X 79699770 79699770 C G FAM46D 3'UTR 0.57 TCGA-2H-A9GM-01 10 100159885 100159885 C T PYROXD2 Missense_Mutation p.A149T 0.17 deleterious(0) benign(0.165) TCGA-2H-A9GM-01 10 112572140 112572140 C T RBM20 Missense_Mutation p.P662L 0.24 tolerated(0.25) benign(0.007) TCGA-2H-A9GM-01 10 117853231 117853231 T C GFRA1 Missense_Mutation p.K333E 0.32 deleterious(0.04) benign(0.018) TCGA-2H-A9GM-01 10 134738356 134738356 G A TTC40 Missense_Mutation p.A367V 0.31 tolerated(0.73) benign(0.016) TCGA-2H-A9GM-01 10 16562539 16562539 G A C1QL3 Missense_Mutation p.H176Y 0.12 deleterious(0) probably_damaging(0.988) TCGA-2H-A9GM-01 10 21071922 21071922 G C NEBL 3'UTR 0.17 TCGA-2H-A9GM-01 10 43881370 43881370 T C HNRNPF 3'UTR 0.33 TCGA-2H-A9GM-01 10 75567398 75567398 G A NDST2 Missense_Mutation p.P250L 0.16 tolerated(0.64) benign(0.003) TCGA-2H-A9GM-01 10 8116272 8116272 T G GATA3 3'UTR 0.17 TCGA-2H-A9GM-01 11 1017612 1017612 G C MUC6 Missense_Mutation p.T1730S 0.42 unknown(0) TCGA-2H-A9GM-01 11 124946707 124946707 G T SLC37A2 Missense_Mutation p.M38I 0.55 tolerated(0.07) benign(0.281) TCGA-2H-A9GM-01 11 1256435 1256435 C T MUC5B Silent p.C917C 0.69 TCGA-2H-A9GM-01 11 30432248 30432248 A - MPPED2 3'UTR 0.43 TCGA-2H-A9GM-01 11 5173189 5173189 G T OR52A1 Silent p.I137I 0.71 TCGA-2H-A9GM-01 11 56230198 56230198 C T OR5M9 Missense_Mutation p.R227H 0.69 tolerated(0.4) benign(0.005) TCGA-2H-A9GM-01 11 92531188 92531188 A C FAT3 Missense_Mutation p.K1670T 0.62 possibly_damaging(0.529) TCGA-2H-A9GM-01 11 92534875 92534875 G T FAT3 Missense_Mutation p.G2899V 0.23 probably_damaging(0.996) TCGA-2H-A9GM-01 12 129181847 129181847 T G TMEM132C Missense_Mutation p.L670V 0.13 deleterious(0.01) probably_damaging(0.927) TCGA-2H-A9GM-01 12 20874909 20874909 A G SLCO1C1 Missense_Mutation p.K316R 0.15 tolerated(0.25) benign(0.008) TCGA-2H-A9GM-01 12 48920224 48920224 G C OR8S1 Missense_Mutation p.L270F 0.12 deleterious(0.03) benign(0.208) TCGA-2H-A9GM-01 12 52080158 52080158 T C SCN8A Silent p.F134F 0.07 TCGA-2H-A9GM-01 12 68642497 68642497 A - IL22 3'UTR 0.46 TCGA-2H-A9GM-01 12 7045860 7045860 C T ATN1 Missense_Mutation p.S477L 0.20 benign(0) TCGA-2H-A9GM-01 12 81648634 81648634 A G ACSS3 Splice_Site p.X666_splice 0.08 TCGA-2H-A9GM-01 13 108518848 108518848 C T FAM155A Missense_Mutation p.E33K 0.06 deleterious(0) probably_damaging(0.992) TCGA-2H-A9GM-01 13 21557846 21557846 T C LATS2 Missense_Mutation p.M667V 0.24 deleterious(0.01) probably_damaging(0.958) TCGA-2H-A9GM-01 13 32735315 32735315 A T FRY Missense_Mutation p.T607S 0.07 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GM-01 13 36805294 36805295 AA C CCDC169 Intron 0.36 TCGA-2H-A9GM-01 13 36909223 36909223 G A SPG20 Nonsense_Mutation p.R249* 0.35 TCGA-2H-A9GM-01 13 42263545 42263545 A T VWA8 Missense_Mutation p.I1359N 0.31 deleterious(0) possibly_damaging(0.498) TCGA-2H-A9GM-01 13 47409764 47409764 C A HTR2A Missense_Mutation p.M208I 0.35 tolerated(0.53) possibly_damaging(0.84) TCGA-2H-A9GM-01 13 52606822 52606822 A G UTP14C 3'UTR 0.18 TCGA-2H-A9GM-01 13 61986458 61986458 T C PCDH20 Missense_Mutation p.T592A 0.38 deleterious(0.04) possibly_damaging(0.728) TCGA-2H-A9GM-01 14 22555044 22555044 C T TRAV23DV6 Missense_Mutation p.A57V 0.79 tolerated(0.07) benign(0.053) TCGA-2H-A9GM-01 14 53244804 53244804 T C GNPNAT1 3'UTR 0.71 TCGA-2H-A9GM-01 14 90429605 90429605 C T TDP1 Silent p.S49S 0.66 TCGA-2H-A9GM-01 15 24925931 24925931 A G NPAP1 3'UTR 0.48 TCGA-2H-A9GM-01 15 26793097 26793097 G T GABRB3 Missense_Mutation p.P422Q 0.61 tolerated(0.51) benign(0.003) TCGA-2H-A9GM-01 15 63088482 63088482 G A TLN2 Missense_Mutation p.A2014T 0.09 deleterious(0.03) benign(0.084) TCGA-2H-A9GM-01 15 86122396 86122396 A G AKAP13 Missense_Mutation p.D366G 0.34 tolerated(0.15) benign(0.306) TCGA-2H-A9GM-01 16 1129612 1129612 C T SSTR5 Silent p.R248R 0.65 TCGA-2H-A9GM-01 16 64982611 64982611 A C CDH11 Intron 0.44 TCGA-2H-A9GM-01 16 66655898 66655898 G A CMTM4 Intron 0.28 TCGA-2H-A9GM-01 17 46005569 46005569 C T SP2 3'UTR 0.42 TCGA-2H-A9GM-01 17 48540593 48540593 G A ACSF2 Missense_Mutation p.R290H 0.19 tolerated(0.17) probably_damaging(1) TCGA-2H-A9GM-01 17 73232775 73232775 A G GGA3 3'UTR 0.11 TCGA-2H-A9GM-01 17 7578401 7578402 - GCA TP53 In_Frame_Ins p.C176dup 0.70 TCGA-2H-A9GM-01 17 7907460 7907460 C T GUCY2D Missense_Mutation p.L338F 0.71 deleterious(0.02) probably_damaging(0.964) TCGA-2H-A9GM-01 18 25568592 25568598 ATTTTTA TTTTTT CDH2 Frame_Shift_Del p.L544Qfs*6 0.38 TCGA-2H-A9GM-01 18 39570425 39570425 T G PIK3C3 Missense_Mutation p.S207R 0.85 tolerated(0.9) benign(0.001) TCGA-2H-A9GM-01 18 5433926 5433926 A G EPB41L3 Missense_Mutation p.V267A 0.25 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GM-01 18 74607162 74607162 C T ZNF236 Silent p.I535I 0.11 TCGA-2H-A9GM-01 19 11034066 11034066 C T YIPF2 Silent p.S284S 0.09 TCGA-2H-A9GM-01 19 21992508 21992508 T G ZNF43 Missense_Mutation p.N111H 0.53 deleterious(0.04) probably_damaging(0.984) TCGA-2H-A9GM-01 19 23927993 23927993 C A ZNF681 Missense_Mutation p.C120F 0.27 tolerated(0.05) possibly_damaging(0.831) TCGA-2H-A9GM-01 19 37314262 37314262 C A ZNF790 Nonsense_Mutation p.E52* 0.21 TCGA-2H-A9GM-01 19 39881593 39881593 C T PAF1 5'UTR 0.14 TCGA-2H-A9GM-01 19 40904377 40904377 C A PRX Intron 0.13 TCGA-2H-A9GM-01 19 44570564 44570564 C A ZNF223 Missense_Mutation p.Q195K 0.51 deleterious(0.03) possibly_damaging(0.789) TCGA-2H-A9GM-01 19 55106867 55106867 G T LILRA1 Missense_Mutation p.G221C 0.53 deleterious(0) probably_damaging(1) TCGA-2H-A9GM-01 19 55147451 55147451 C T AC009892.10 Missense_Mutation p.R41Q 0.62 unknown(0) TCGA-2H-A9GM-01 19 55295113 55295113 G A KIR2DL1 Missense_Mutation p.E299K 0.10 deleterious(0) probably_damaging(0.965) TCGA-2H-A9GM-01 19 56132337 56132337 G A ZNF784 3'UTR 0.25 TCGA-2H-A9GM-01 19 57325627 57325627 C A PEG3 Missense_Mutation p.A1395S 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-2H-A9GM-01 19 6694472 6694472 G A C3 Missense_Mutation p.R1042W 0.23 deleterious(0) probably_damaging(1) TCGA-2H-A9GM-01 19 9066962 9066962 A G MUC16 Silent p.P6828P 0.31 TCGA-2H-A9GM-01 1 1459346 1459346 T G ATAD3A Splice_Site p.X411_splice 0.42 TCGA-2H-A9GM-01 1 146466341 146466341 A G NBPF12 3'UTR 0.14 TCGA-2H-A9GM-01 1 153723688 153723688 C A INTS3 Missense_Mutation p.D234E 0.26 tolerated(0.38) benign(0.004) TCGA-2H-A9GM-01 1 156213678 156213679 CT - PAQR6 Frame_Shift_Del p.E345Dfs*49 0.42 TCGA-2H-A9GM-01 1 176903418 176903418 C T ASTN1 Silent p.A847A 0.46 TCGA-2H-A9GM-01 1 176918382 176918382 G T ASTN1 Missense_Mutation p.L665I 0.22 deleterious(0.01) possibly_damaging(0.727) TCGA-2H-A9GM-01 1 19505602 19505602 T C UBR4 Missense_Mutation p.H766R 0.12 benign(0.027) TCGA-2H-A9GM-01 1 203134918 203134918 C T ADORA1 Missense_Mutation p.R291C 0.67 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GM-01 1 228476017 228476017 C T OBSCN Missense_Mutation p.T3785I 0.10 possibly_damaging(0.86) TCGA-2H-A9GM-01 1 236144956 236144956 G A NID1 Missense_Mutation p.T1061I 0.32 deleterious(0) possibly_damaging(0.883) TCGA-2H-A9GM-01 1 27678010 27678010 C T SYTL1 Missense_Mutation p.P436L 0.09 deleterious(0) probably_damaging(0.995) TCGA-2H-A9GM-01 1 28864449 28864449 G A RCC1 Missense_Mutation p.R430H 0.09 tolerated(0.06) benign(0.018) TCGA-2H-A9GM-01 1 52253843 52253843 C T OSBPL9 3'UTR 0.12 TCGA-2H-A9GM-01 1 77515986 77515986 A G ST6GALNAC5 Missense_Mutation p.T239A 0.08 benign(0.026) TCGA-2H-A9GM-01 1 82416057 82416057 T G LPHN2 Missense_Mutation p.I461M 0.48 tolerated(0.15) benign(0.058) TCGA-2H-A9GM-01 1 91967309 91967309 A G CDC7 Silent p.P12P 0.13 TCGA-2H-A9GM-01 20 17474638 17474638 T C BFSP1 3'UTR 0.05 TCGA-2H-A9GM-01 20 35929643 35929643 G A MANBAL 5'UTR 0.38 TCGA-2H-A9GM-01 20 55803475 55803475 C G BMP7 Missense_Mutation p.E141Q 0.28 deleterious(0.04) probably_damaging(0.91) TCGA-2H-A9GM-01 20 61943892 61943892 G T COL20A1 Missense_Mutation p.V642L 0.52 tolerated(0.38) benign(0.032) TCGA-2H-A9GM-01 2 108487194 108487194 G T RGPD4 Nonsense_Mutation p.E912* 0.29 TCGA-2H-A9GM-01 2 108488228 108488228 A C RGPD4 Missense_Mutation p.E1256D 0.35 deleterious(0.04) benign(0.074) TCGA-2H-A9GM-01 2 140990116 140990116 A C LRP1B 3'UTR 0.38 TCGA-2H-A9GM-01 2 145145936 145145936 G A ZEB2 3'UTR 0.28 TCGA-2H-A9GM-01 2 167334116 167334116 C A SCN7A Nonsense_Mutation p.E31* 0.14 TCGA-2H-A9GM-01 2 170094672 170094672 G A LRP2 Missense_Mutation p.R1479C 0.27 benign(0.117) TCGA-2H-A9GM-01 2 186672616 186672616 C A FSIP2 Missense_Mutation p.P6284T 0.07 probably_damaging(0.962) TCGA-2H-A9GM-01 2 196765009 196765009 C A DNAH7 Silent p.L1515L 0.39 TCGA-2H-A9GM-01 2 198571905 198571905 G T MARS2 Silent p.R592R 0.33 TCGA-2H-A9GM-01 2 202003000 202003000 C A CFLAR Intron 0.11 TCGA-2H-A9GM-01 2 220088693 220088693 G A ATG9A Silent p.R439R 0.31 TCGA-2H-A9GM-01 2 220501511 220501511 G A SLC4A3 Missense_Mutation p.R844H 0.26 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GM-01 2 242312706 242312706 G T FARP2 Splice_Site p.X61_splice 0.66 TCGA-2H-A9GM-01 2 29222063 29222063 G T FAM179A Missense_Mutation p.E52D 0.13 tolerated(0.61) benign(0.048) TCGA-2H-A9GM-01 2 55776095 55776095 T G SMEK2 3'UTR 0.31 TCGA-2H-A9GM-01 2 74327581 74327581 G A TET3 Silent p.P1087P 0.29 TCGA-2H-A9GM-01 2 75720457 75720457 G T EVA1A Missense_Mutation p.Q122K 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-2H-A9GM-01 3 122606273 122606273 T C RP11-67L2.2 RNA 0.57 TCGA-2H-A9GM-01 3 125286337 125286337 G C OSBPL11 Missense_Mutation p.L257V 0.14 deleterious(0.01) benign(0.166) TCGA-2H-A9GM-01 3 138724343 138724343 C T PRR23A Silent p.P256P 0.10 TCGA-2H-A9GM-01 3 152555685 152555685 C T P2RY1 3'UTR 0.51 TCGA-2H-A9GM-01 3 183273223 183273223 A T KLHL6 Missense_Mutation p.D73E 0.48 deleterious(0) probably_damaging(1) TCGA-2H-A9GM-01 3 186503674 186503674 C T EIF4A2 Silent p.I117I 0.08 TCGA-2H-A9GM-01 3 20153121 20153121 C T KAT2B Silent p.C295C 0.13 TCGA-2H-A9GM-01 3 55502679 55502680 TA - WNT5A 3'UTR 0.25 TCGA-2H-A9GM-01 3 56330140 56330140 C T ERC2 Silent p.E327E 0.41 TCGA-2H-A9GM-01 3 74411155 74411155 T G CNTN3 Missense_Mutation p.K417T 0.60 tolerated(0.06) benign(0.012) TCGA-2H-A9GM-01 3 86989983 86989983 A C VGLL3 3'UTR 0.47 TCGA-2H-A9GM-01 4 118005428 118005428 C A TRAM1L1 3'UTR 0.14 TCGA-2H-A9GM-01 4 134071475 134071475 G C PCDH10 Missense_Mutation p.R60S 0.08 tolerated(0.07) probably_damaging(0.998) TCGA-2H-A9GM-01 4 13606489 13606489 G A BOD1L1 Nonsense_Mutation p.Q679* 0.30 TCGA-2H-A9GM-01 4 24801870 24801870 C T SOD3 3'UTR 0.54 TCGA-2H-A9GM-01 4 41984854 41984854 C T DCAF4L1 Missense_Mutation p.L349F 0.70 deleterious(0) probably_damaging(0.992) TCGA-2H-A9GM-01 4 41984856 41984856 C T DCAF4L1 Silent p.L349L 0.69 TCGA-2H-A9GM-01 4 6293076 6293076 G A WFS1 Missense_Mutation p.G205S 0.29 tolerated(0.48) probably_damaging(0.918) TCGA-2H-A9GM-01 4 66280141 66280141 C T EPHA5 Silent p.T516T 0.71 TCGA-2H-A9GM-01 4 74321406 74321406 C T AFP 3'UTR 0.14 TCGA-2H-A9GM-01 5 120022198 120022198 C A PRR16 Missense_Mutation p.P214T 0.21 deleterious_low_confidence(0.05) benign(0.088) TCGA-2H-A9GM-01 5 137454539 137454539 C T NME5 Missense_Mutation p.E175K 0.54 tolerated(0.34) benign(0.021) TCGA-2H-A9GM-01 5 140558518 140558518 A C PCDHB8 Missense_Mutation p.E301D 0.21 tolerated_low_confidence(0.13) benign(0.02) TCGA-2H-A9GM-01 5 140725370 140725370 G A PCDHGA3 Silent p.K590K 0.42 TCGA-2H-A9GM-01 5 150900870 150900870 G A FAT2 Missense_Mutation p.R3762W 0.68 possibly_damaging(0.895) TCGA-2H-A9GM-01 5 178987059 178987059 A T RUFY1 Missense_Mutation p.N115I 0.67 deleterious(0) benign(0.415) TCGA-2H-A9GM-01 5 26988340 26988340 C A CDH9 Missense_Mutation p.S34I 0.18 tolerated(0.06) benign(0.005) TCGA-2H-A9GM-01 5 72377780 72377780 G A FCHO2 Silent p.T717T 0.53 TCGA-2H-A9GM-01 5 76924672 76924672 C T OTP 3'UTR 0.45 TCGA-2H-A9GM-01 6 110429852 110429852 A C WASF1 Missense_Mutation p.F101V 0.20 deleterious(0) unknown(0) TCGA-2H-A9GM-01 6 112441533 112441534 - T LAMA4 Frame_Shift_Ins p.L1540Tfs*4 0.09 TCGA-2H-A9GM-01 6 118636486 118636486 G T SLC35F1 3'UTR 0.27 TCGA-2H-A9GM-01 6 165827032 165827032 T A PDE10A Missense_Mutation p.K412I 0.17 deleterious(0) probably_damaging(0.989) TCGA-2H-A9GM-01 6 29716711 29716711 G A XXbac-BPG170G13.32 3'Flank 0.58 TCGA-2H-A9GM-01 6 44224561 44224561 C G SLC35B2 Missense_Mutation p.E22D 0.11 tolerated(0.36) benign(0) TCGA-2H-A9GM-01 6 51524568 51524568 A C PKHD1 Silent p.T3452T 0.41 TCGA-2H-A9GM-01 6 57467188 57467188 A C PRIM2 3'UTR 0.13 TCGA-2H-A9GM-01 6 7230280 7230280 C T RREB1 Nonsense_Mutation p.Q650* 0.60 TCGA-2H-A9GM-01 6 93952206 93952206 T A EPHA7 3'UTR 0.26 TCGA-2H-A9GM-01 6 99729193 99729193 C A FAXC Silent p.L359L 0.15 TCGA-2H-A9GM-01 7 114619635 114619635 A G MDFIC Missense_Mutation p.N207D 0.27 deleterious(0.03) benign(0.023) TCGA-2H-A9GM-01 7 127010799 127010799 A C ZNF800 3'UTR 0.07 TCGA-2H-A9GM-01 7 129125630 129125630 C T STRIP2 Missense_Mutation p.S822L 0.41 deleterious(0.02) possibly_damaging(0.489) TCGA-2H-A9GM-01 7 136912412 136912413 AA - PTN 3'UTR 0.16 TCGA-2H-A9GM-01 7 48259060 48259060 A G ABCA13 Missense_Mutation p.K133E 0.15 benign(0.007) TCGA-2H-A9GM-01 7 84628715 84628715 T G SEMA3D 3'UTR 0.19 TCGA-2H-A9GM-01 7 84629130 84629130 T G SEMA3D Missense_Mutation p.S654R 0.22 tolerated(1) possibly_damaging(0.568) TCGA-2H-A9GM-01 7 86416181 86416181 A T GRM3 Missense_Mutation p.K358M 0.15 tolerated(0.06) probably_damaging(0.915) TCGA-2H-A9GM-01 8 106813368 106813368 A T ZFPM2 Missense_Mutation p.H353L 0.07 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GM-01 8 37997157 37997157 A T ASH2L 3'UTR 0.54 TCGA-2H-A9GM-01 8 39496015 39496015 A G ADAM18 Missense_Mutation p.T287A 0.40 tolerated(0.07) benign(0.284) TCGA-2H-A9GM-01 8 77618065 77618065 A G ZFHX4 Missense_Mutation p.D581G 0.32 benign(0.009) TCGA-2H-A9GM-01 8 87242065 87242065 G T SLC7A13 Missense_Mutation p.L148M 0.28 deleterious(0.03) possibly_damaging(0.795) TCGA-2H-A9GM-01 8 88886202 88886202 C T DCAF4L2 5'UTR 0.25 TCGA-2H-A9GM-01 8 92090640 92090640 T C OTUD6B Silent p.I154I 0.50 TCGA-2H-A9GM-01 8 93029721 93029721 C A RUNX1T1 Intron 0.37 TCGA-2H-A9GM-01 8 95892948 95892948 T G CCNE2 3'UTR 0.26 TCGA-2H-A9GM-01 9 101913009 101913009 T G TGFBR1 3'UTR 0.66 TCGA-2H-A9GM-01 9 130509456 130509456 C T SH2D3C Missense_Mutation p.E412K 0.72 tolerated(0.23) possibly_damaging(0.707) TCGA-2H-A9GM-01 9 138830109 138830109 G A UBAC1 Missense_Mutation p.P354L 0.14 deleterious(0) probably_damaging(1) TCGA-2H-A9GM-01 9 40702724 40702724 C T SPATA31A3 Silent p.G127G 0.24 TCGA-2H-A9GM-01 9 84608583 84608583 A G SPATA31D1 Silent p.R1066R 0.83 TCGA-2H-A9GM-01 9 90321181 90321181 C T DAPK1 Silent p.T1065T 0.24 TCGA-2H-A9GM-01 X 106046078 106046078 T G TBC1D8B 5'UTR 0.74 TCGA-2H-A9GM-01 X 151128132 151128132 A C GABRE Intron 0.56 TCGA-2H-A9GM-01 X 18767935 18767935 C T PPEF1 Silent p.S87S 0.31 TCGA-2H-A9GM-01 X 20159766 20159766 G A EIF1AX 5'UTR 0.61 TCGA-2H-A9GM-01 X 32472939 32472939 C T DMD Missense_Mutation p.R1148K 0.78 probably_damaging(0.937) TCGA-2H-A9GM-01 X 36122690 36122690 A G CHDC2 Silent p.K309K 0.71 TCGA-2H-A9GM-01 X 50377488 50377488 C A SHROOM4 Missense_Mutation p.A529S 0.29 tolerated(0.36) benign(0.007) TCGA-2H-A9GM-01 X 77912710 77912710 T G ZCCHC5 Missense_Mutation p.K403T 0.56 tolerated(0.22) benign(0.002) TCGA-2H-A9GN-01 10 12391792 12391792 G A CAMK1D 5'UTR 0.59 TCGA-2H-A9GN-01 10 55973754 55973754 A C PCDH15 Missense_Mutation p.L347R 0.56 deleterious(0) probably_damaging(0.977) TCGA-2H-A9GN-01 10 63169897 63169897 C T TMEM26 3'UTR 0.24 TCGA-2H-A9GN-01 10 76735386 76735386 A C KAT6B Missense_Mutation p.T431P 0.21 probably_damaging(0.997) TCGA-2H-A9GN-01 11 100847134 100847134 T C ARHGAP42 Silent p.S734S 0.22 TCGA-2H-A9GN-01 11 113803807 113803807 C T HTR3B Nonsense_Mutation p.Q230* 0.21 TCGA-2H-A9GN-01 11 116703493 116703493 G A APOC3 Missense_Mutation p.D65N 0.26 tolerated(0.22) possibly_damaging(0.825) TCGA-2H-A9GN-01 11 123513207 123513207 T A SCN3B Missense_Mutation p.H131L 0.42 tolerated(0.06) benign(0.294) TCGA-2H-A9GN-01 11 1263020 1263020 C T MUC5B Missense_Mutation p.P1637L 0.57 unknown(0) TCGA-2H-A9GN-01 11 1269837 1269837 C T MUC5B Silent p.V3909V 0.38 TCGA-2H-A9GN-01 11 132527063 132527063 C G OPCML Missense_Mutation p.V107L 0.21 tolerated(0.06) benign(0.042) TCGA-2H-A9GN-01 11 22384351 22384351 C A SLC17A6 Missense_Mutation p.S243Y 0.31 deleterious(0.01) benign(0.14) TCGA-2H-A9GN-01 11 22384363 22384363 A G SLC17A6 Missense_Mutation p.Y247C 0.31 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GN-01 11 2436661 2436661 C G TRPM5 Missense_Mutation p.S390T 0.25 deleterious(0) benign(0.234) TCGA-2H-A9GN-01 11 62677888 62677888 C T CHRM1 Missense_Mutation p.E229K 0.52 tolerated(0.76) benign(0.061) TCGA-2H-A9GN-01 11 6497465 6497465 G A ARFIP2 3'UTR 0.38 TCGA-2H-A9GN-01 11 65620889 65620889 C A SNX32 3'UTR 0.57 TCGA-2H-A9GN-01 11 65824803 65824803 G A SF3B2 Missense_Mutation p.R245Q 0.40 tolerated_low_confidence(0.4) benign(0.022) TCGA-2H-A9GN-01 11 66413571 66413571 C T RBM14-RBM4 3'UTR 0.45 TCGA-2H-A9GN-01 11 67024132 67024132 C T KDM2A 3'UTR 0.29 TCGA-2H-A9GN-01 11 73007861 73007861 C T P2RY6 Missense_Mutation p.R100C 0.41 deleterious(0) probably_damaging(0.976) TCGA-2H-A9GN-01 12 11150474 11150474 T C TAS2R20 Translation_Start_Site p.M1? 0.44 deleterious(0) benign(0.361) TCGA-2H-A9GN-01 12 118517313 118517313 C T VSIG10 Missense_Mutation p.D255N 0.34 tolerated(0.47) benign(0.004) TCGA-2H-A9GN-01 12 118517327 118517327 C T VSIG10 Missense_Mutation p.G250E 0.38 deleterious(0) probably_damaging(1) TCGA-2H-A9GN-01 12 5022603 5022603 C T KCNA1 3'UTR 0.50 TCGA-2H-A9GN-01 12 5153505 5153505 G A KCNA5 Silent p.V64V 0.45 TCGA-2H-A9GN-01 12 51818768 51818768 C T SLC4A8 5'UTR 0.23 TCGA-2H-A9GN-01 12 53874929 53874929 T G MAP3K12 3'UTR 0.30 TCGA-2H-A9GN-01 12 56428656 56428656 C T IKZF4 Silent p.P433P 0.40 TCGA-2H-A9GN-01 12 6575561 6575561 G T VAMP1 Intron 0.26 TCGA-2H-A9GN-01 12 66703967 66703968 - CACACAG HELB Frame_Shift_Ins p.D423Hfs*6 0.33 TCGA-2H-A9GN-01 12 6981290 6981290 T A SPSB2 Intron 0.53 TCGA-2H-A9GN-01 12 7044758 7044758 G A ATN1 Missense_Mutation p.G110R 0.20 probably_damaging(0.998) TCGA-2H-A9GN-01 12 82796879 82796879 T A METTL25 Missense_Mutation p.L417I 0.27 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GN-01 12 96379931 96379931 A G HAL Silent p.H353H 0.33 TCGA-2H-A9GN-01 13 100511232 100511232 C G CLYBL Missense_Mutation p.L123V 0.70 tolerated(0.4) benign(0.009) TCGA-2H-A9GN-01 13 39264040 39264040 C T FREM2 Silent p.H853H 0.34 TCGA-2H-A9GN-01 14 102676559 102676559 A C WDR20 3'Flank 0.79 TCGA-2H-A9GN-01 14 105409712 105409712 C G AHNAK2 Missense_Mutation p.E4026Q 0.43 benign(0.343) TCGA-2H-A9GN-01 14 105639420 105639420 C T NUDT14 Missense_Mutation p.G203S 0.83 tolerated(0.12) benign(0.411) TCGA-2H-A9GN-01 14 45669311 45669311 T A FANCM 3'UTR 0.33 TCGA-2H-A9GN-01 15 20658926 20658926 C T HERC2P3 RNA 0.18 TCGA-2H-A9GN-01 15 34655019 34655019 G A LPCAT4 Silent p.L255L 0.31 TCGA-2H-A9GN-01 15 34656266 34656266 G C LPCAT4 Missense_Mutation p.F200L 0.36 tolerated(0.31) probably_damaging(0.914) TCGA-2H-A9GN-01 15 35045307 35045307 A G GJD2 Missense_Mutation p.F113S 0.42 tolerated(0.35) benign(0.055) TCGA-2H-A9GN-01 15 40648331 40648331 G C PHGR1 Missense_Mutation p.G26R 0.11 unknown(0) TCGA-2H-A9GN-01 15 42835002 42835002 T C LRRC57 3'UTR 0.44 TCGA-2H-A9GN-01 15 44751267 44751267 C T CTDSPL2 Missense_Mutation p.R19C 0.18 tolerated_low_confidence(0.1) benign(0.025) TCGA-2H-A9GN-01 15 45983235 45983236 CT - SQRDL 3'UTR 0.32 TCGA-2H-A9GN-01 15 55971641 55971641 G C PRTG Missense_Mutation p.P326A 0.53 tolerated(0.2) benign(0.126) TCGA-2H-A9GN-01 15 65864687 65864687 T C PTPLAD1 Missense_Mutation p.L332P 0.33 deleterious(0.02) probably_damaging(1) TCGA-2H-A9GN-01 16 5105319 5105319 A C C16orf89 Missense_Mutation p.F266V 0.26 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GN-01 16 51174681 51174681 G T SALL1 Missense_Mutation p.N484K 0.81 deleterious(0) probably_damaging(0.984) TCGA-2H-A9GN-01 16 7761911 7761911 C T RBFOX1 3'UTR 0.62 TCGA-2H-A9GN-01 16 88666204 88666204 A T ZC3H18 Missense_Mutation p.L312F 0.21 deleterious_low_confidence(0) unknown(0) TCGA-2H-A9GN-01 17 10728672 10728672 C A PIRT Silent p.L97L 0.47 TCGA-2H-A9GN-01 17 39221750 39221750 C T KRTAP2-4 Silent p.P116P 0.75 TCGA-2H-A9GN-01 17 40854483 40854483 C T EZH1 3'UTR 0.64 TCGA-2H-A9GN-01 17 46214524 46214525 - AAAC SKAP1 Intron 0.34 TCGA-2H-A9GN-01 17 7578222 7578223 TC - TP53 Frame_Shift_Del p.R209Kfs*6 0.44 TCGA-2H-A9GN-01 18 48591919 48591919 G A SMAD4 Missense_Mutation p.R361H 0.75 deleterious(0.03) probably_damaging(1) TCGA-2H-A9GN-01 19 12187160 12187160 A G ZNF844 Missense_Mutation p.I409V 0.33 tolerated(0.35) benign(0.007) TCGA-2H-A9GN-01 19 12224158 12224158 G A ZNF788 Missense_Mutation p.R599H 0.64 deleterious(0.03) benign(0) TCGA-2H-A9GN-01 19 12841554 12841554 G A C19orf43 3'UTR 0.40 TCGA-2H-A9GN-01 19 14160008 14160008 C T IL27RA Silent p.A428A 0.26 TCGA-2H-A9GN-01 19 38877720 38877720 A G GGN Missense_Mutation p.M61T 0.31 deleterious_low_confidence(0) unknown(0) TCGA-2H-A9GN-01 19 38946168 38946168 C T RYR1 Missense_Mutation p.R552W 0.16 possibly_damaging(0.88) TCGA-2H-A9GN-01 19 46417601 46417601 G A NANOS2 Silent p.N117N 0.64 TCGA-2H-A9GN-01 19 50885724 50885724 C G NR1H2 Silent p.R416R 0.32 TCGA-2H-A9GN-01 19 51022077 51022077 G A LRRC4B Missense_Mutation p.T298M 0.41 deleterious(0.01) possibly_damaging(0.601) TCGA-2H-A9GN-01 19 52919153 52919153 G T ZNF528 Nonsense_Mutation p.E350* 0.20 TCGA-2H-A9GN-01 19 54312916 54312916 T A NLRP12 Missense_Mutation p.Y666F 0.40 tolerated(0.65) benign(0.006) TCGA-2H-A9GN-01 19 57174972 57174972 C T ZNF835 Missense_Mutation p.R532H 0.48 tolerated_low_confidence(0.22) benign(0) TCGA-2H-A9GN-01 19 58757716 58757716 G A ZNF544 Nonsense_Mutation p.W28* 0.31 TCGA-2H-A9GN-01 1 10035755 10035755 C G NMNAT1 Missense_Mutation p.T74S 0.25 deleterious(0.03) possibly_damaging(0.741) TCGA-2H-A9GN-01 1 1139264 1139264 G A TNFRSF18 Missense_Mutation p.R159W 0.17 tolerated_low_confidence(0.17) benign(0) TCGA-2H-A9GN-01 1 13716931 13716931 A C PRAMEF17 Silent p.R140R 0.27 TCGA-2H-A9GN-01 1 152882812 152882812 A G IVL Missense_Mutation p.E180G 0.27 deleterious(0.01) unknown(0) TCGA-2H-A9GN-01 1 155260412 155260412 C T PKLR Missense_Mutation p.R559Q 0.20 tolerated(0.09) benign(0.016) TCGA-2H-A9GN-01 1 161137901 161137901 G A PPOX Missense_Mutation p.R152H 0.14 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GN-01 1 170707302 170707302 A C PRRX1 3'UTR 0.12 TCGA-2H-A9GN-01 1 176659680 176659680 G A PAPPA2 Intron 0.39 TCGA-2H-A9GN-01 1 19499498 19499498 C T UBR4 Silent p.A1127A 0.15 TCGA-2H-A9GN-01 1 203316579 203316579 G A FMOD Missense_Mutation p.R274W 0.09 deleterious(0) probably_damaging(1) TCGA-2H-A9GN-01 1 205890954 205890954 G C SLC26A9 Missense_Mutation p.Q599E 0.14 tolerated(0.39) benign(0.247) TCGA-2H-A9GN-01 1 247109044 247109044 G A ZNF695 3'UTR 0.18 TCGA-2H-A9GN-01 1 35452920 35452920 G C ZMYM6 Missense_Mutation p.Q1255E 0.07 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-2H-A9GN-01 1 41087889 41087889 C G RIMS3 3'UTR 0.64 TCGA-2H-A9GN-01 1 74819805 74819805 A G FPGT-TNNI3K Missense_Mutation p.Y504C 0.24 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GN-01 1 7829726 7829726 T C CAMTA1 3'UTR 0.31 TCGA-2H-A9GN-01 20 1615969 1615969 C T SIRPG Missense_Mutation p.R342H 0.40 tolerated(0.11) benign(0.001) TCGA-2H-A9GN-01 20 31575539 31575539 T C SUN5 Missense_Mutation p.H219R 0.37 tolerated(0.12) benign(0.372) TCGA-2H-A9GN-01 20 31825905 31825905 G C BPIFA1 Missense_Mutation p.E69Q 0.32 tolerated(0.17) benign(0.124) TCGA-2H-A9GN-01 20 33440292 33440292 C T GGT7 Missense_Mutation p.A457T 0.14 tolerated(0.4) benign(0.002) TCGA-2H-A9GN-01 20 47351176 47351176 G C PREX1 Missense_Mutation p.F142L 0.42 deleterious(0.04) probably_damaging(0.999) TCGA-2H-A9GN-01 20 4776546 4776546 G A RASSF2 Silent p.L68L 0.27 TCGA-2H-A9GN-01 20 53205284 53205284 C T DOK5 Silent p.I116I 0.45 TCGA-2H-A9GN-01 20 57569723 57569723 G T NELFCD Missense_Mutation p.V598L 0.40 deleterious_low_confidence(0.05) benign(0.007) TCGA-2H-A9GN-01 20 62839660 62839660 G T MYT1 Missense_Mutation p.D371Y 0.29 probably_damaging(0.982) TCGA-2H-A9GN-01 21 32253808 32253808 G A KRTAP11-1 Silent p.S12S 0.26 TCGA-2H-A9GN-01 22 17083058 17083058 G A TPTEP1 RNA 0.27 TCGA-2H-A9GN-01 22 24313714 24313714 G T DDT 3'UTR 0.55 TCGA-2H-A9GN-01 22 36685195 36685195 A C MYH9 Missense_Mutation p.L1498R 0.68 benign(0.063) TCGA-2H-A9GN-01 2 114475412 114475412 G C SLC35F5 Missense_Mutation p.S504R 0.41 tolerated(0.34) benign(0.002) TCGA-2H-A9GN-01 2 121107294 121107294 C T INHBB Silent p.N356N 0.44 TCGA-2H-A9GN-01 2 131097207 131097207 C G CCDC115 Intron 0.58 TCGA-2H-A9GN-01 2 132021884 132021884 C T POTEE Silent p.N952N 0.21 TCGA-2H-A9GN-01 2 132290352 132290352 G C CCDC74A Missense_Mutation p.E292Q 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-2H-A9GN-01 2 145146086 145146086 T A ZEB2 3'UTR 0.45 TCGA-2H-A9GN-01 2 160176310 160176315 GAAAAC - BAZ2B 3'UTR 0.26 TCGA-2H-A9GN-01 2 166245328 166245328 T C SCN2A Missense_Mutation p.M1671T 0.36 deleterious(0.01) possibly_damaging(0.637) TCGA-2H-A9GN-01 2 177017864 177017864 G - HOXD4 3'UTR 0.44 TCGA-2H-A9GN-01 2 204737982 204737982 C G CTLA4 3'UTR 0.28 TCGA-2H-A9GN-01 2 211085455 211085455 C T ACADL Missense_Mutation p.R50Q 0.82 deleterious(0.01) probably_damaging(0.995) TCGA-2H-A9GN-01 2 216974039 216974039 C G XRCC5 5'UTR 0.34 TCGA-2H-A9GN-01 2 219000352 219000352 C A CXCR2 Silent p.L276L 0.13 TCGA-2H-A9GN-01 2 220094504 220094504 C G ANKZF1 5'UTR 0.46 TCGA-2H-A9GN-01 2 231657972 231657972 A G CAB39 Silent p.R108R 0.22 TCGA-2H-A9GN-01 2 241725750 241725750 A C KIF1A Splice_Site p.X203_splice 0.08 TCGA-2H-A9GN-01 2 24974968 24974968 C T NCOA1 Missense_Mutation p.S1275F 0.39 tolerated(0.24) possibly_damaging(0.656) TCGA-2H-A9GN-01 2 26703132 26703132 C T OTOF Silent p.L617L 0.10 TCGA-2H-A9GN-01 2 33482427 33482427 C G LTBP1 Missense_Mutation p.H748Q 0.51 tolerated(0.14) benign(0.01) TCGA-2H-A9GN-01 2 42285285 42285285 C G PKDCC 3'UTR 0.21 TCGA-2H-A9GN-01 2 55199859 55199859 A G RTN4 3'UTR 0.95 TCGA-2H-A9GN-01 2 5836560 5836560 G C SOX11 3'UTR 0.44 TCGA-2H-A9GN-01 2 88991444 88991444 C T RPIA Silent p.S76S 0.79 TCGA-2H-A9GN-01 3 111298030 111298031 AG - CD96 Frame_Shift_Del p.R250Sfs*4 0.28 TCGA-2H-A9GN-01 3 113619948 113619948 A T GRAMD1C Missense_Mutation p.E204V 0.25 deleterious(0) possibly_damaging(0.779) TCGA-2H-A9GN-01 3 122632261 122632261 G A SEMA5B Missense_Mutation p.T818M 0.38 tolerated(0.16) possibly_damaging(0.799) TCGA-2H-A9GN-01 3 13368884 13368884 C T NUP210 Missense_Mutation p.R1447H 0.08 tolerated(0.06) possibly_damaging(0.523) TCGA-2H-A9GN-01 3 138189772 138189772 C T ESYT3 Silent p.C548C 0.22 TCGA-2H-A9GN-01 3 158289179 158289179 A G MLF1 Intron 0.08 TCGA-2H-A9GN-01 3 173999962 173999962 A G NLGN1 3'UTR 0.29 TCGA-2H-A9GN-01 3 184032427 184032427 G A EIF4G1 5'Flank 0.24 TCGA-2H-A9GN-01 3 21792515 21792515 C T ZNF385D 5'UTR 0.82 TCGA-2H-A9GN-01 3 47467561 47467561 T A SCAP Missense_Mutation p.E279V 0.67 deleterious(0.01) benign(0.36) TCGA-2H-A9GN-01 4 121957188 121957188 C G NDNF 3'UTR 0.80 TCGA-2H-A9GN-01 4 134072935 134072935 A T PCDH10 Missense_Mutation p.D547V 0.40 deleterious(0) probably_damaging(0.97) TCGA-2H-A9GN-01 4 153332739 153332739 G A FBXW7 Nonsense_Mutation p.Q73* 0.71 TCGA-2H-A9GN-01 4 24802128 24802128 G C SOD3 3'UTR 0.65 TCGA-2H-A9GN-01 4 24802144 24802144 C T SOD3 3'UTR 0.69 TCGA-2H-A9GN-01 4 25783966 25783968 CTT - SEL1L3 In_Frame_Del p.K785del 0.72 TCGA-2H-A9GN-01 4 57842621 57842621 G T NOA1 Silent p.I377I 0.58 TCGA-2H-A9GN-01 4 71255819 71255819 T G SMR3B 3'UTR 0.74 TCGA-2H-A9GN-01 4 87718046 87718046 G A PTPN13 Missense_Mutation p.C2127Y 0.70 tolerated(0.57) benign(0.005) TCGA-2H-A9GN-01 5 118482976 118482976 G A DMXL1 Missense_Mutation p.V908I 0.25 tolerated(0.2) benign(0.001) TCGA-2H-A9GN-01 5 149676934 149676934 C - ARSI Frame_Shift_Del p.G518Vfs*47 0.17 TCGA-2H-A9GN-01 5 157182878 157182878 C G LSM11 3'UTR 0.22 TCGA-2H-A9GN-01 6 105177430 105177430 C T HACE1 3'UTR 0.54 TCGA-2H-A9GN-01 6 163990181 163990181 T C QKI Intron 0.33 TCGA-2H-A9GN-01 6 163990183 163990183 A T QKI Intron 0.33 TCGA-2H-A9GN-01 6 25488781 25488781 T G LRRC16A Missense_Mutation p.S345A 0.37 deleterious(0.02) probably_damaging(0.995) TCGA-2H-A9GN-01 6 2667864 2667864 T A MYLK4 3'UTR 0.24 TCGA-2H-A9GN-01 6 30594688 30594688 C A ATAT1 5'UTR 0.23 TCGA-2H-A9GN-01 6 33037071 33037071 G C HLA-DPA1 Missense_Mutation p.P118R 0.24 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GN-01 6 42689525 42689525 C T PRPH2 Missense_Mutation p.R183H 0.62 deleterious(0) possibly_damaging(0.572) TCGA-2H-A9GN-01 6 55266767 55266767 T A GFRAL 3'UTR 0.62 TCGA-2H-A9GN-01 6 56374518 56374518 A G DST Silent p.L3689L 0.30 TCGA-2H-A9GN-01 6 70970365 70970365 C T COL9A1 Missense_Mutation p.E482K 0.35 possibly_damaging(0.634) TCGA-2H-A9GN-01 7 107569652 107569652 T G LAMB1 Splice_Site p.X1582_splice 0.75 TCGA-2H-A9GN-01 7 126173499 126173499 A T GRM8 Missense_Mutation p.I646N 0.61 tolerated(0.22) benign(0.131) TCGA-2H-A9GN-01 7 128845505 128845505 T C SMO Missense_Mutation p.F268L 0.82 deleterious(0.03) possibly_damaging(0.46) TCGA-2H-A9GN-01 7 1536943 1536943 G A INTS1 Missense_Mutation p.A478V 0.29 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GN-01 7 38765796 38765796 A T VPS41 3'UTR 0.42 TCGA-2H-A9GN-01 7 40027419 40027419 A C CDK13 Missense_Mutation p.K478T 0.35 deleterious(0.01) unknown(0) TCGA-2H-A9GN-01 7 4824612 4824612 G A AP5Z1 Silent p.P288P 0.31 TCGA-2H-A9GN-01 7 92970741 92970741 A C CCDC132 Missense_Mutation p.E687D 0.17 tolerated(0.22) benign(0.002) TCGA-2H-A9GN-01 7 93623235 93623235 T A BET1 3'UTR 0.11 TCGA-2H-A9GN-01 8 124826404 124826404 A G FAM91A1 3'UTR 0.34 TCGA-2H-A9GN-01 8 12880146 12880146 T G KIAA1456 3'UTR 0.38 TCGA-2H-A9GN-01 8 136533590 136533590 T G KHDRBS3 Missense_Mutation p.F67V 0.21 deleterious(0) probably_damaging(0.969) TCGA-2H-A9GN-01 8 145662361 145662361 C - TONSL Intron 0.17 TCGA-2H-A9GN-01 8 54906287 54906287 G A TCEA1 Silent p.D87D 0.35 TCGA-2H-A9GN-01 8 55372131 55372131 T G SOX17 Missense_Mutation p.L274R 0.56 tolerated(0.36) probably_damaging(0.995) TCGA-2H-A9GN-01 8 55540273 55540273 T G RP1 Missense_Mutation p.S1277R 0.36 tolerated(0.14) benign(0.01) TCGA-2H-A9GN-01 8 58196770 58196770 T C LINC00588 RNA 0.41 TCGA-2H-A9GN-01 8 71520334 71520335 - AGAC TRAM1 Frame_Shift_Ins p.F34Cfs*9 0.35 TCGA-2H-A9GN-01 9 131767801 131767801 C T NUP188 Silent p.L1577L 0.12 TCGA-2H-A9GN-01 9 136290691 136290691 C T ADAMTS13 Missense_Mutation p.R125W 0.52 deleterious(0.02) benign(0.348) TCGA-2H-A9GN-01 9 139397714 139397714 G A NOTCH1 Missense_Mutation p.A1696V 0.15 tolerated(0.07) possibly_damaging(0.61) TCGA-2H-A9GN-01 9 140074823 140074823 G A ANAPC2 Missense_Mutation p.S567F 0.15 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GN-01 9 140287583 140287583 G - EXD3 Intron 0.13 TCGA-2H-A9GN-01 9 71766657 71766657 A G TJP2 5'UTR 0.27 TCGA-2H-A9GN-01 9 86905095 86905095 C T SLC28A3 Missense_Mutation p.V375M 0.42 deleterious(0.01) probably_damaging(0.972) TCGA-2H-A9GN-01 X 118786960 118786960 A T SEPT6 Missense_Mutation p.Y129N 0.90 deleterious(0) probably_damaging(0.946) TCGA-2H-A9GN-01 X 135430821 135430821 T G GPR112 Silent p.T1652T 0.39 TCGA-2H-A9GN-01 X 21534649 21534649 C G CNKSR2 Missense_Mutation p.P286R 0.78 deleterious(0) probably_damaging(0.947) TCGA-2H-A9GN-01 X 37545352 37545352 G A XK Silent p.L46L 0.87 TCGA-2H-A9GN-01 X 37705577 37705577 A G DYNLT3 Missense_Mutation p.V22A 0.93 tolerated(0.12) benign(0.187) TCGA-2H-A9GN-01 X 54982677 54982677 C T PFKFB1 Missense_Mutation p.D183N 0.79 benign(0.019) TCGA-2H-A9GN-01 X 62857721 62857722 TC - ARHGEF9 3'UTR 0.23 TCGA-2H-A9GN-01 X 6452477 6452477 T G VCX3A Missense_Mutation p.K21T 0.89 deleterious_low_confidence(0) unknown(0) TCGA-2H-A9GO-01 10 11372391 11372391 T G CELF2 Intron 0.22 TCGA-2H-A9GO-01 10 129207590 129207590 C T DOCK1 Silent p.F1405F 0.09 TCGA-2H-A9GO-01 10 14572365 14572365 C T FAM107B Missense_Mutation p.D207N 0.24 tolerated(0.13) probably_damaging(0.937) TCGA-2H-A9GO-01 10 14974898 14974898 G C DCLRE1C Silent p.L245L 0.28 TCGA-2H-A9GO-01 10 16980995 16980995 T G CUBN Missense_Mutation p.E1900D 0.25 deleterious(0.03) probably_damaging(0.996) TCGA-2H-A9GO-01 10 26825011 26825011 C A APBB1IP Missense_Mutation p.F303L 0.33 deleterious(0) probably_damaging(0.989) TCGA-2H-A9GO-01 10 46113654 46113654 T G ZFAND4 Missense_Mutation p.K661T 0.69 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GO-01 10 61444055 61444055 G A SLC16A9 5'UTR 0.29 TCGA-2H-A9GO-01 10 64403613 64403613 C G ZNF365 Intron 0.29 TCGA-2H-A9GO-01 10 98741294 98741294 C G C10orf12 Missense_Mutation p.N49K 0.41 deleterious(0.01) benign(0.353) TCGA-2H-A9GO-01 11 121476267 121476267 G A SORL1 Silent p.R1645R 0.50 TCGA-2H-A9GO-01 11 123900543 123900543 T C OR10G8 Missense_Mutation p.S72P 0.38 tolerated(0.21) probably_damaging(0.999) TCGA-2H-A9GO-01 11 128844131 128844131 T G ARHGAP32 Missense_Mutation p.E973D 0.46 tolerated_low_confidence(0.07) benign(0.002) TCGA-2H-A9GO-01 11 18158959 18158959 G A MRGPRX3 Silent p.A70A 0.64 TCGA-2H-A9GO-01 11 20652269 20652269 C A SLC6A5 Missense_Mutation p.A511D 0.09 deleterious(0.01) possibly_damaging(0.889) TCGA-2H-A9GO-01 11 33370811 33370811 T C HIPK3 Missense_Mutation p.S929P 0.05 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GO-01 11 36599128 36599128 T G RAG1 3'UTR 0.50 TCGA-2H-A9GO-01 11 46401935 46401935 G C DGKZ 3'UTR 0.11 TCGA-2H-A9GO-01 11 47364637 47364637 G A MYBPC3 Missense_Mutation p.A429V 0.55 deleterious(0.04) benign(0.323) TCGA-2H-A9GO-01 11 7335091 7335091 A G SYT9 Silent p.Q321Q 0.59 TCGA-2H-A9GO-01 11 99715909 99715909 A C CNTN5 Missense_Mutation p.E164D 0.40 tolerated(0.06) possibly_damaging(0.567) TCGA-2H-A9GO-01 12 10978034 10978034 G A TAS2R10 Silent p.L279L 0.43 TCGA-2H-A9GO-01 12 113806984 113806984 C T PLBD2 Silent p.A118A 0.58 TCGA-2H-A9GO-01 12 126138656 126138656 G A TMEM132B Silent p.P879P 0.15 TCGA-2H-A9GO-01 12 131488770 131488770 C T GPR133 Missense_Mutation p.S395F 0.33 tolerated(0.71) benign(0.003) TCGA-2H-A9GO-01 12 40922066 40922066 T G MUC19 Intron 0.32 TCGA-2H-A9GO-01 12 40925057 40925057 A G MUC19 Intron 0.42 TCGA-2H-A9GO-01 12 40940947 40940947 T C MUC19 3'UTR 0.33 TCGA-2H-A9GO-01 12 41968185 41968185 T G PDZRN4 3'Flank 0.46 TCGA-2H-A9GO-01 12 47471279 47471279 T C AMIGO2 Missense_Mutation p.K503E 0.22 tolerated(0.06) probably_damaging(0.997) TCGA-2H-A9GO-01 12 52845660 52845660 T C KRT6B Missense_Mutation p.K68R 0.09 tolerated(0.21) unknown(0) TCGA-2H-A9GO-01 12 53567224 53567224 C A CSAD Missense_Mutation p.A38S 0.15 tolerated(0.74) benign(0.043) TCGA-2H-A9GO-01 12 73012730 73012730 A C TRHDE Missense_Mutation p.K749T 0.09 tolerated(0.92) benign(0.003) TCGA-2H-A9GO-01 12 79611436 79611436 A C SYT1 Missense_Mutation p.K46T 0.48 tolerated(0.07) possibly_damaging(0.597) TCGA-2H-A9GO-01 12 80729902 80729902 C T OTOGL Missense_Mutation p.P1519S 0.10 deleterious(0.02) probably_damaging(1) TCGA-2H-A9GO-01 12 81671098 81671098 T C PPFIA2 Missense_Mutation p.K1103R 0.17 tolerated(0.35) benign(0.013) TCGA-2H-A9GO-01 13 111372025 111372025 C T ING1 Nonsense_Mutation p.R339* 0.50 TCGA-2H-A9GO-01 13 45149652 45149652 C T TSC22D1 Missense_Mutation p.G187R 0.29 deleterious(0) probably_damaging(1) TCGA-2H-A9GO-01 13 50207531 50207531 A G ARL11 3'UTR 0.37 TCGA-2H-A9GO-01 13 51568781 51568781 C T GUCY1B2 RNA 0.16 TCGA-2H-A9GO-01 13 67802465 67802465 T G PCDH9 Missense_Mutation p.E36D 0.32 tolerated(0.24) probably_damaging(0.999) TCGA-2H-A9GO-01 13 90883441 90883441 A C MIR622 RNA 0.25 TCGA-2H-A9GO-01 14 106320780 106320780 G A IGHM Missense_Mutation p.R344W 0.43 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GO-01 14 58583052 58583052 C A C14orf37 Intron 0.32 TCGA-2H-A9GO-01 14 86092223 86092223 T C FLRT2 3'UTR 0.43 TCGA-2H-A9GO-01 15 102359250 102359250 C G OR4F15 Nonsense_Mutation p.Y287* 0.18 TCGA-2H-A9GO-01 15 25315620 25315620 G A SNORD116-8 RNA 0.17 TCGA-2H-A9GO-01 15 33927904 33927904 T C RYR3 Missense_Mutation p.F1089L 0.17 probably_damaging(0.998) TCGA-2H-A9GO-01 15 90125917 90125917 T G TICRR Missense_Mutation p.L219V 0.33 deleterious(0.04) benign(0.127) TCGA-2H-A9GO-01 16 20360416 20360416 G T UMOD Nonsense_Mutation p.C69* 0.21 TCGA-2H-A9GO-01 16 2052579 2052579 C T ZNF598 Missense_Mutation p.R207H 0.24 probably_damaging(1) TCGA-2H-A9GO-01 16 5289852 5289854 TCC - RP11-420N3.2 RNA 0.33 TCGA-2H-A9GO-01 17 12044909 12044909 A T MAP2K4 3'UTR 0.33 TCGA-2H-A9GO-01 17 15943760 15943760 G T NCOR1 Missense_Mutation p.T2243K 0.26 benign(0.12) TCGA-2H-A9GO-01 17 39240715 39240715 G A KRTAP4-7 Missense_Mutation p.R86H 0.18 deleterious(0.02) unknown(0) TCGA-2H-A9GO-01 17 42164017 42164017 C T HDAC5 Missense_Mutation p.R659H 0.10 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GO-01 17 5076646 5076646 A C USP6 3'UTR 0.55 TCGA-2H-A9GO-01 17 7579350 7579350 A C TP53 Missense_Mutation p.F113V 0.57 deleterious(0) probably_damaging(1) TCGA-2H-A9GO-01 17 7721353 7721353 C T DNAH2 Silent p.N3442N 0.21 TCGA-2H-A9GO-01 17 79077394 79077394 G A BAIAP2 Silent p.Q245Q 0.39 TCGA-2H-A9GO-01 17 9745841 9745841 T G GLP2R Missense_Mutation p.L138V 0.22 deleterious(0.04) possibly_damaging(0.859) TCGA-2H-A9GO-01 18 25531766 25531766 T C CDH2 3'UTR 0.19 TCGA-2H-A9GO-01 18 72020590 72020590 C T C18orf63 Missense_Mutation p.S363L 0.11 deleterious(0.04) probably_damaging(0.911) TCGA-2H-A9GO-01 19 11231050 11231050 G A LDLR Silent p.V664V 0.20 TCGA-2H-A9GO-01 19 18779956 18779956 G A KLHL26 Silent p.T583T 0.25 TCGA-2H-A9GO-01 19 2111747 2111747 C T AP3D1 Silent p.Q956Q 0.22 TCGA-2H-A9GO-01 19 21606380 21606380 A C ZNF493 Missense_Mutation p.T307P 0.27 tolerated(0.25) possibly_damaging(0.844) TCGA-2H-A9GO-01 19 22952779 22952779 A G ZNF99 Intron 0.17 TCGA-2H-A9GO-01 19 37369058 37369058 T G ZNF345 Silent p.T442T 0.30 TCGA-2H-A9GO-01 19 38901801 38901801 G A RASGRP4 Silent p.P602P 0.17 TCGA-2H-A9GO-01 19 41399821 41399821 G T CYP2G1P RNA 0.24 TCGA-2H-A9GO-01 19 49490517 49490517 C T GYS1 Silent p.P142P 0.43 TCGA-2H-A9GO-01 19 53794015 53794015 C T BIRC8 5'UTR 0.07 TCGA-2H-A9GO-01 19 55994931 55994931 G C ZNF628 Missense_Mutation p.G791R 0.09 tolerated(0.06) unknown(0) TCGA-2H-A9GO-01 19 56424494 56424494 G A NLRP13 Missense_Mutation p.T230M 0.38 deleterious(0) probably_damaging(1) TCGA-2H-A9GO-01 19 56935115 56935115 A G ZNF583 Missense_Mutation p.H363R 0.14 tolerated(0.46) possibly_damaging(0.861) TCGA-2H-A9GO-01 19 57066422 57066422 T G ZFP28 Silent p.P756P 0.14 TCGA-2H-A9GO-01 19 6147599 6147599 C T ACSBG2 Silent p.L70L 0.09 TCGA-2H-A9GO-01 19 885801 885801 A G MED16 Missense_Mutation p.L283P 0.10 deleterious(0.01) probably_damaging(0.928) TCGA-2H-A9GO-01 1 12885133 12885133 T C PRAMEF11 Silent p.Q326Q 0.23 TCGA-2H-A9GO-01 1 153916619 153916619 C T DENND4B Missense_Mutation p.E78K 0.14 deleterious(0.03) probably_damaging(0.914) TCGA-2H-A9GO-01 1 155584306 155584306 G A MSTO1 3'UTR 0.26 TCGA-2H-A9GO-01 1 158631199 158631199 C G SPTA1 Missense_Mutation p.G822A 0.13 deleterious(0.04) probably_damaging(1) TCGA-2H-A9GO-01 1 158645985 158645985 T C SPTA1 Missense_Mutation p.E353G 0.38 tolerated(0.07) benign(0.013) TCGA-2H-A9GO-01 1 186007987 186007987 C G HMCN1 Missense_Mutation p.L1960V 0.07 benign(0.048) TCGA-2H-A9GO-01 1 196250003 196250003 A C KCNT2 Missense_Mutation p.L966R 0.21 tolerated(0.13) probably_damaging(0.972) TCGA-2H-A9GO-01 1 233275510 233275510 G A PCNXL2 Silent p.A1203A 0.57 TCGA-2H-A9GO-01 1 247902410 247902410 A C OR14K1 Missense_Mutation p.N165T 0.45 tolerated(0.23) benign(0.018) TCGA-2H-A9GO-01 1 27633122 27633122 C - WDTC1 3'UTR 0.55 TCGA-2H-A9GO-01 1 27677651 27677651 C T SYTL1 Intron 0.20 TCGA-2H-A9GO-01 1 33794743 33794743 G A PHC2 Missense_Mutation p.T717I 0.16 tolerated(0.3) benign(0.004) TCGA-2H-A9GO-01 1 37356630 37356630 T G GRIK3 Silent p.R61R 0.35 TCGA-2H-A9GO-01 1 53692677 53692677 C A MAGOH 3'UTR 0.40 TCGA-2H-A9GO-01 1 6527943 6527943 G C PLEKHG5 Missense_Mutation p.L1064V 0.46 deleterious_low_confidence(0.04) probably_damaging(0.953) TCGA-2H-A9GO-01 1 79005254 79005254 T G PTGFR 3'UTR 0.24 TCGA-2H-A9GO-01 1 87120149 87120149 A G RP4-651E10.4 Intron 0.08 TCGA-2H-A9GO-01 20 20079415 20079415 C T C20orf26 Silent p.D272D 0.37 TCGA-2H-A9GO-01 20 33000369 33000369 G C ITCH Missense_Mutation p.Q87H 0.21 tolerated(1) benign(0.063) TCGA-2H-A9GO-01 20 34116711 34116711 G C C20orf173 Intron 0.45 TCGA-2H-A9GO-01 21 31692195 31692195 T C KRTAP26-1 Silent p.T53T 0.34 TCGA-2H-A9GO-01 22 37480411 37480411 A C TMPRSS6 Missense_Mutation p.F383V 0.19 deleterious(0) probably_damaging(0.971) TCGA-2H-A9GO-01 2 109271462 109271462 G A LIMS1 5'Flank 0.24 TCGA-2H-A9GO-01 2 110065908 110065908 A C SH3RF3 Missense_Mutation p.N704T 0.41 tolerated(0.2) benign(0.118) TCGA-2H-A9GO-01 2 11053168 11053168 G A KCNF1 Missense_Mutation p.E206K 0.14 tolerated(0.07) possibly_damaging(0.558) TCGA-2H-A9GO-01 2 138434452 138434452 A G THSD7B 3'UTR 0.25 TCGA-2H-A9GO-01 2 141607790 141607790 T A LRP1B Missense_Mutation p.D1607V 0.19 possibly_damaging(0.804) TCGA-2H-A9GO-01 2 149241395 149241395 G T MBD5 Intron 0.25 TCGA-2H-A9GO-01 2 160289805 160289805 T G BAZ2B Missense_Mutation p.I455L 0.26 benign(0.031) TCGA-2H-A9GO-01 2 1658253 1658253 G A PXDN Missense_Mutation p.P622L 0.36 tolerated(0.21) benign(0.279) TCGA-2H-A9GO-01 2 179469607 179469607 C T TTN Missense_Mutation p.R18070K 0.31 TCGA-2H-A9GO-01 2 186673392 186673392 A G FSIP2 Silent p.K6542K 0.19 TCGA-2H-A9GO-01 2 196723220 196723220 G A DNAH7 Missense_Mutation p.A2682V 0.26 deleterious(0) probably_damaging(1) TCGA-2H-A9GO-01 2 215848404 215848404 C T ABCA12 Nonsense_Mutation p.W1450* 0.56 TCGA-2H-A9GO-01 2 24443832 24443832 G T ITSN2 Missense_Mutation p.D1227E 0.30 deleterious(0.04) unknown(0) TCGA-2H-A9GO-01 2 32695336 32695336 C T BIRC6 Nonsense_Mutation p.Q2150* 0.08 TCGA-2H-A9GO-01 2 96578003 96578003 G A ANKRD36C Missense_Mutation p.T30I 0.32 tolerated(0.18) benign(0.001) TCGA-2H-A9GO-01 3 10108990 10108990 A C FANCD2 Missense_Mutation p.K828T 0.39 tolerated(0.09) benign(0.166) TCGA-2H-A9GO-01 3 11596333 11596333 G C ATG7 3'UTR 0.26 TCGA-2H-A9GO-01 3 122449431 122449432 AG - PARP14 3'UTR 0.31 TCGA-2H-A9GO-01 3 146309619 146309619 T G PLSCR5 Missense_Mutation p.K168T 0.20 tolerated(1) benign(0.086) TCGA-2H-A9GO-01 3 152132832 152132832 A C MBNL1 Missense_Mutation p.M93L 0.29 tolerated(0.17) probably_damaging(0.924) TCGA-2H-A9GO-01 3 164758861 164758862 - A SI Frame_Shift_Ins p.G676Wfs*8 0.17 TCGA-2H-A9GO-01 3 167023731 167023731 A G ZBBX Silent p.T475T 0.30 TCGA-2H-A9GO-01 3 172428853 172428853 C A NCEH1 Silent p.G6G 0.29 TCGA-2H-A9GO-01 3 43121490 43121490 G A POMGNT2 Silent p.V478V 0.41 TCGA-2H-A9GO-01 3 47284565 47284565 G A KIF9 Missense_Mutation p.P562L 0.39 tolerated(0.15) benign(0.003) TCGA-2H-A9GO-01 3 48623646 48623646 G A COL7A1 Missense_Mutation p.A1195V 0.12 unknown(0) TCGA-2H-A9GO-01 3 57125309 57125309 C G IL17RD 3'UTR 0.33 TCGA-2H-A9GO-01 3 97887982 97887982 T G OR5H15 Missense_Mutation p.L147V 0.24 tolerated(0.78) benign(0.213) TCGA-2H-A9GO-01 3 9848470 9848470 A G ARPC4 3'Flank 0.18 TCGA-2H-A9GO-01 4 106157180 106157180 T G TET2 Missense_Mutation p.L694R 0.27 deleterious(0.01) possibly_damaging(0.736) TCGA-2H-A9GO-01 4 138451482 138451482 T G PCDH18 Missense_Mutation p.E587D 0.33 tolerated(0.28) benign(0.005) TCGA-2H-A9GO-01 4 15069772 15069772 T G CPEB2 3'UTR 0.46 TCGA-2H-A9GO-01 4 20544250 20544250 G T SLIT2 Splice_Site p.X759_splice 0.38 TCGA-2H-A9GO-01 4 48422217 48422217 G A SLAIN2 Missense_Mutation p.S479N 0.07 tolerated(0.09) benign(0.006) TCGA-2H-A9GO-01 4 66189754 66189754 T A EPHA5 3'UTR 0.19 TCGA-2H-A9GO-01 4 66467875 66467875 A C EPHA5 Missense_Mutation p.F132V 0.45 deleterious(0) probably_damaging(0.985) TCGA-2H-A9GO-01 4 72994561 72994561 T G NPFFR2 Missense_Mutation p.L187V 0.27 tolerated(0.18) probably_damaging(0.982) TCGA-2H-A9GO-01 4 81978194 81978194 C G BMP3 3'UTR 0.11 TCGA-2H-A9GO-01 5 11732320 11732320 G A CTNND2 Silent p.G34G 0.09 TCGA-2H-A9GO-01 5 127614390 127614390 G A FBN2 Missense_Mutation p.P2428S 0.32 deleterious(0.02) possibly_damaging(0.734) TCGA-2H-A9GO-01 5 13776619 13776619 T C DNAH5 Missense_Mutation p.K3101R 0.33 possibly_damaging(0.621) TCGA-2H-A9GO-01 5 140221171 140221171 C T PCDHA8 Missense_Mutation p.R89W 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.819) TCGA-2H-A9GO-01 5 140255345 140255345 C T PCDHA12 Silent p.C96C 0.18 TCGA-2H-A9GO-01 5 140562569 140562569 C T PCDHB16 Silent p.N145N 0.44 TCGA-2H-A9GO-01 5 141974991 141974991 G A FGF1 Missense_Mutation p.T111I 0.27 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GO-01 5 153434532 153434532 G A MFAP3 3'UTR 0.14 TCGA-2H-A9GO-01 5 161325375 161325375 T G GABRA1 3'UTR 0.29 TCGA-2H-A9GO-01 5 180058729 180058729 C T FLT4 Silent p.E36E 0.12 TCGA-2H-A9GO-01 5 32789565 32789565 T C AC026703.1 Silent p.L20L 0.25 TCGA-2H-A9GO-01 5 41042283 41042283 T G MROH2B Missense_Mutation p.T622P 0.61 deleterious(0) probably_damaging(0.975) TCGA-2H-A9GO-01 5 5242181 5242181 A C ADAMTS16 Silent p.R847R 0.21 TCGA-2H-A9GO-01 5 82808152 82808152 C T VCAN Missense_Mutation p.R327C 0.24 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GO-01 5 85913914 85913914 C T COX7C Silent p.V14V 0.12 TCGA-2H-A9GO-01 6 110948026 110948026 T G CDK19 Missense_Mutation p.R271S 0.07 tolerated(0.24) benign(0.217) TCGA-2H-A9GO-01 6 117246753 117246753 C A RFX6 Missense_Mutation p.Q606K 0.10 tolerated_low_confidence(0.07) benign(0.04) TCGA-2H-A9GO-01 6 129635907 129635907 C T LAMA2 Silent p.T1173T 0.09 TCGA-2H-A9GO-01 6 152702457 152702457 C T SYNE1 Missense_Mutation p.S2898N 0.25 benign(0.002) TCGA-2H-A9GO-01 6 158438282 158438282 G A SYNJ2 Silent p.T58T 0.19 TCGA-2H-A9GO-01 6 26234761 26234761 C G HIST1H1D Missense_Mutation p.G134A 0.10 tolerated(0.28) unknown(0) TCGA-2H-A9GO-01 6 26413697 26413697 A C BTN3A1 Missense_Mutation p.K440T 0.21 tolerated(0.14) benign(0.076) TCGA-2H-A9GO-01 6 31601702 31601702 G A PRRC2A Missense_Mutation p.G1552E 0.08 unknown(0) TCGA-2H-A9GO-01 6 39846264 39846264 C T DAAM2 Missense_Mutation p.T482M 0.43 tolerated(0.12) possibly_damaging(0.694) TCGA-2H-A9GO-01 6 42980731 42980731 C T MEA1 Silent p.E113E 0.15 TCGA-2H-A9GO-01 6 45515640 45515640 T G RUNX2 3'UTR 0.17 TCGA-2H-A9GO-01 6 6320890 6320890 G A F13A1 5'UTR 0.16 TCGA-2H-A9GO-01 6 66094313 66094313 T G EYS Missense_Mutation p.E422A 0.40 tolerated(0.27) benign(0.034) TCGA-2H-A9GO-01 6 73108708 73108708 A G RIMS1 Missense_Mutation p.K1591R 0.13 tolerated(0.15) benign(0.281) TCGA-2H-A9GO-01 7 141883081 141883081 G A RP11-1220K2.2 Missense_Mutation p.G1278S 0.16 probably_damaging(0.997) TCGA-2H-A9GO-01 7 142423519 142423519 G A TRBV27 Missense_Mutation p.G59R 0.39 TCGA-2H-A9GO-01 7 148801692 148801692 C T ZNF425 Missense_Mutation p.R424H 0.27 tolerated(0.19) benign(0.315) TCGA-2H-A9GO-01 7 148950858 148950858 C A ZNF212 Missense_Mutation p.S280R 0.17 tolerated(0.41) benign(0.003) TCGA-2H-A9GO-01 7 22983441 22983441 C T FAM126A 3'UTR 0.08 TCGA-2H-A9GO-01 7 2579269 2579269 G A BRAT1 Silent p.F502F 0.07 TCGA-2H-A9GO-01 7 31732111 31732111 A T PPP1R17 Missense_Mutation p.K19M 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.468) TCGA-2H-A9GO-01 7 37354505 37354505 T C ELMO1 Silent p.E47E 0.08 TCGA-2H-A9GO-01 7 5103739 5103739 G A RBAK Missense_Mutation p.A218T 0.38 tolerated(0.57) benign(0.005) TCGA-2H-A9GO-01 7 57529385 57529385 A C ZNF716 Missense_Mutation p.K406N 0.16 deleterious(0.02) possibly_damaging(0.543) TCGA-2H-A9GO-01 7 88963087 88963087 A T ZNF804B Missense_Mutation p.K264M 0.75 tolerated(0.32) benign(0.043) TCGA-2H-A9GO-01 7 90837159 90837159 A C CDK14 3'UTR 0.55 TCGA-2H-A9GO-01 8 124221886 124221886 C T FAM83A 3'UTR 0.32 TCGA-2H-A9GO-01 8 133931746 133931746 G A TG Missense_Mutation p.A1502T 0.26 tolerated(0.63) benign(0.018) TCGA-2H-A9GO-01 8 134030169 134030169 C - TG Frame_Shift_Del p.L2238Wfs*12 0.10 TCGA-2H-A9GO-01 8 38135883 38135883 T A WHSC1L1 Nonsense_Mutation p.R1270* 0.12 TCGA-2H-A9GO-01 8 41788365 41788365 G A KAT6A 3'UTR 0.22 TCGA-2H-A9GO-01 8 48751732 48751733 - A PRKDC Frame_Shift_Ins p.L2509Ffs*4 0.22 TCGA-2H-A9GO-01 8 52320734 52320734 G C PXDNL Missense_Mutation p.I1150M 0.50 deleterious(0.04) probably_damaging(0.954) TCGA-2H-A9GO-01 8 6357421 6357421 G A MCPH1 Missense_Mutation p.E729K 0.27 deleterious(0) probably_damaging(0.988) TCGA-2H-A9GO-01 8 70517099 70517099 A G SULF1 Missense_Mutation p.K437E 0.25 deleterious(0) probably_damaging(0.989) TCGA-2H-A9GO-01 8 70980758 70980758 G T PRDM14 Missense_Mutation p.S237Y 0.27 deleterious(0.01) possibly_damaging(0.603) TCGA-2H-A9GO-01 8 70981796 70981796 C T PRDM14 Silent p.P100P 0.22 TCGA-2H-A9GO-01 9 101908876 101908876 C G TGFBR1 Missense_Mutation p.R414G 0.14 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GO-01 9 120476670 120476670 A C TLR4 Missense_Mutation p.Q755P 0.23 deleterious(0) probably_damaging(1) TCGA-2H-A9GO-01 9 125437661 125437661 T G OR1L3 Missense_Mutation p.F85V 0.37 tolerated(0.51) possibly_damaging(0.578) TCGA-2H-A9GO-01 9 131030440 131030440 C G GOLGA2 Splice_Site p.X105_splice 0.19 TCGA-2H-A9GO-01 9 133309192 133309192 C T HMCN2 3'UTR 0.20 TCGA-2H-A9GO-01 9 136298771 136298771 G A ADAMTS13 Missense_Mutation p.G419R 0.28 deleterious(0) probably_damaging(1) TCGA-2H-A9GO-01 9 138011965 138011965 G A OLFM1 Missense_Mutation p.G449S 0.45 tolerated(0.13) probably_damaging(0.983) TCGA-2H-A9GO-01 9 18777699 18777699 C T ADAMTSL1 Nonsense_Mutation p.R1158* 0.44 TCGA-2H-A9GO-01 9 72962954 72962954 G A SMC5 Silent p.E963E 0.27 TCGA-2H-A9GO-01 9 74842874 74842874 G A GDA Missense_Mutation p.G280S 0.18 tolerated(0.47) probably_damaging(0.967) TCGA-2H-A9GO-01 X 107413219 107413219 C A COL4A6 Missense_Mutation p.G1175V 0.63 probably_damaging(1) TCGA-2H-A9GO-01 X 118724446 118724446 T C NKRF Silent p.P329P 0.13 TCGA-2H-A9GO-01 X 135591328 135591330 CTT - HTATSF1 In_Frame_Del p.L306del 0.40 TCGA-2H-A9GO-01 X 139587001 139587001 T A SOX3 Silent p.A75A 0.70 TCGA-2H-A9GO-01 X 142716039 142716039 A C SLITRK4 3'UTR 0.46 TCGA-2H-A9GO-01 X 142803808 142803808 G T SPANXN2 5'UTR 0.57 TCGA-2H-A9GO-01 X 1508156 1508156 G A SLC25A6 Silent p.F192F 0.50 TCGA-2H-A9GO-01 X 24006110 24006110 C G KLHL15 Missense_Mutation p.K581N 0.58 tolerated(0.09) probably_damaging(0.966) TCGA-2H-A9GO-01 X 30254368 30254368 C T MAGEB3 Silent p.D109D 0.66 TCGA-2H-A9GO-01 X 51150037 51150037 G A CXorf67 Missense_Mutation p.G57S 0.81 tolerated(0.08) benign(0.008) TCGA-2H-A9GO-01 X 71933721 71933721 C T PHKA1 Missense_Mutation p.S3N 0.10 tolerated(0.06) benign(0.117) TCGA-2H-A9GO-01 X 83362682 83362682 G A RPS6KA6 Missense_Mutation p.P354S 0.61 tolerated(0.09) benign(0.098) TCGA-2H-A9GO-01 X 8434032 8434032 G A VCX3B Missense_Mutation p.E117K 0.45 tolerated(0.07) unknown(0) TCGA-2H-A9GQ-01 10 103291061 103291061 C T BTRC Missense_Mutation p.L271F 0.15 deleterious(0.01) possibly_damaging(0.795) TCGA-2H-A9GQ-01 10 118351287 118351287 A G PNLIPRP1 Silent p.K18K 0.57 TCGA-2H-A9GQ-01 10 131635709 131635709 G T EBF3 3'UTR 0.29 TCGA-2H-A9GQ-01 10 133761153 133761153 G T PPP2R2D Missense_Mutation p.V283L 0.71 tolerated(0.76) benign(0.02) TCGA-2H-A9GQ-01 10 15760810 15760810 C T ITGA8 Missense_Mutation p.A100T 0.27 tolerated(0.12) benign(0.251) TCGA-2H-A9GQ-01 10 50186419 50186419 T C WDFY4 Silent p.A3119A 0.10 TCGA-2H-A9GQ-01 10 54054096 54054096 A C PRKG1 3'UTR 0.31 TCGA-2H-A9GQ-01 10 75530546 75530546 G A SEC24C Missense_Mutation p.R1045Q 0.15 deleterious(0.04) possibly_damaging(0.761) TCGA-2H-A9GQ-01 11 1016373 1016376 GAAG - MUC6 Frame_Shift_Del p.S2142Ffs*33 0.29 TCGA-2H-A9GQ-01 11 1031203 1031203 G A MUC6 Silent p.D180D 0.42 TCGA-2H-A9GQ-01 11 104904982 104904982 A C CASP1 Missense_Mutation p.I76S 0.53 deleterious(0) probably_damaging(0.966) TCGA-2H-A9GQ-01 11 123894086 123894086 T G OR10G9 Missense_Mutation p.L123V 0.16 tolerated(0.74) benign(0.144) TCGA-2H-A9GQ-01 11 12695979 12695979 T G TEAD1 5'UTR 0.45 TCGA-2H-A9GQ-01 11 128331322 128331322 C A ETS1 3'UTR 0.54 TCGA-2H-A9GQ-01 11 134179592 134179592 C G GLB1L3 Missense_Mutation p.T345S 0.62 tolerated(0.06) probably_damaging(0.979) TCGA-2H-A9GQ-01 11 15994143 15994143 A C SOX6 3'UTR 0.39 TCGA-2H-A9GQ-01 11 17483280 17483280 C T ABCC8 Silent p.L224L 0.31 TCGA-2H-A9GQ-01 11 1902780 1902780 G A LSP1 Missense_Mutation p.G232R 0.52 tolerated_low_confidence(0.07) benign(0.018) TCGA-2H-A9GQ-01 11 218900 218900 C G SIRT3 Missense_Mutation p.E371Q 0.24 tolerated(0.45) benign(0.009) TCGA-2H-A9GQ-01 11 2407784 2407784 G T CD81 Intron 0.14 TCGA-2H-A9GQ-01 11 46760903 46760904 AT - F2 Frame_Shift_Del p.H605Rfs*13 0.33 TCGA-2H-A9GQ-01 11 57085349 57085349 G A TNKS1BP1 Silent p.S247S 0.57 TCGA-2H-A9GQ-01 11 57449977 57449977 G T ZDHHC5 Missense_Mutation p.S63I 0.27 deleterious(0.01) probably_damaging(0.96) TCGA-2H-A9GQ-01 11 61541625 61541625 C T MYRF Silent p.H434H 0.24 TCGA-2H-A9GQ-01 11 64678099 64678099 G A ATG2A Missense_Mutation p.R566C 0.31 deleterious(0) possibly_damaging(0.88) TCGA-2H-A9GQ-01 11 73715552 73715552 A C UCP3 Missense_Mutation p.L207R 0.58 deleterious(0) probably_damaging(0.983) TCGA-2H-A9GQ-01 11 79113144 79113144 G A TENM4 Intron 0.19 TCGA-2H-A9GQ-01 11 89935704 89935704 G A CHORDC1 Nonsense_Mutation p.R290* 0.25 TCGA-2H-A9GQ-01 11 92703096 92703096 C T MTNR1B Missense_Mutation p.R69C 0.24 deleterious(0) probably_damaging(0.932) TCGA-2H-A9GQ-01 11 95712164 95712164 T C MAML2 Missense_Mutation p.D1140G 0.26 unknown(0) TCGA-2H-A9GQ-01 12 111296453 111296453 A G CCDC63 Silent p.K81K 0.87 TCGA-2H-A9GQ-01 12 18552745 18552745 C G PIK3C2G Missense_Mutation p.S719C 0.36 tolerated(0.08) probably_damaging(0.948) TCGA-2H-A9GQ-01 12 54424123 54424123 T C HOXC6 3'UTR 0.88 TCGA-2H-A9GQ-01 12 56524830 56524830 C A ESYT1 Missense_Mutation p.R192S 0.55 deleterious(0) possibly_damaging(0.525) TCGA-2H-A9GQ-01 12 58017820 58017820 G A SLC26A10 Missense_Mutation p.R389H 0.83 deleterious(0.01) probably_damaging(1) TCGA-2H-A9GQ-01 12 69084420 69084420 C G NUP107 Missense_Mutation p.T66R 0.31 tolerated_low_confidence(0.72) benign(0.013) TCGA-2H-A9GQ-01 12 7273293 7273293 G A RBP5 3'Flank 0.29 TCGA-2H-A9GQ-01 12 78400991 78400991 A C NAV3 Missense_Mutation p.K558T 0.89 deleterious(0.01) probably_damaging(0.921) TCGA-2H-A9GQ-01 12 81655762 81655762 C T PPFIA2 Silent p.%3D 0.28 TCGA-2H-A9GQ-01 13 24798141 24798141 T A SPATA13 Missense_Mutation p.H358Q 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-2H-A9GQ-01 13 32841495 32841495 A T FRY Missense_Mutation p.K2712M 0.46 deleterious(0) benign(0.372) TCGA-2H-A9GQ-01 13 37678734 37678734 C T CSNK1A1L Silent p.P220P 0.70 TCGA-2H-A9GQ-01 13 50034315 50034315 A T SETDB2 Missense_Mutation p.N30I 0.45 deleterious(0) possibly_damaging(0.757) TCGA-2H-A9GQ-01 13 58299185 58299185 G T PCDH17 Silent p.L1079L 0.29 TCGA-2H-A9GQ-01 13 86367707 86367707 C T SLITRK6 3'UTR 0.28 TCGA-2H-A9GQ-01 13 88331522 88331522 G A SLITRK5 3'UTR 0.43 TCGA-2H-A9GQ-01 14 103931996 103931996 A T MARK3 Missense_Mutation p.S215C 0.45 deleterious(0) probably_damaging(1) TCGA-2H-A9GQ-01 14 20215952 20215952 C A OR4Q3 Missense_Mutation p.D122E 0.38 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GQ-01 14 23306080 23306080 C A MMP14 Silent p.L18L 0.50 TCGA-2H-A9GQ-01 14 23441697 23441697 C T AJUBA 3'UTR 0.39 TCGA-2H-A9GQ-01 14 37992724 37992724 G C MIPOL1 Intron 0.41 TCGA-2H-A9GQ-01 14 81557442 81557442 T C TSHR Missense_Mutation p.F141S 0.33 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GQ-01 15 23098846 23098846 C T RP11-566K19.6 RNA 0.19 TCGA-2H-A9GQ-01 15 25432690 25432690 T G SNORD115-10 RNA 0.53 TCGA-2H-A9GQ-01 15 25436571 25436571 G T SNORD115-12 RNA 0.57 TCGA-2H-A9GQ-01 15 26789558 26789558 A G GABRB3 3'UTR 0.31 TCGA-2H-A9GQ-01 15 42867918 42867918 C T STARD9 Missense_Mutation p.A2V 0.31 probably_damaging(0.96) TCGA-2H-A9GQ-01 15 50578203 50578203 A - GABPB1 Intron 0.26 TCGA-2H-A9GQ-01 15 59931165 59931165 G C GTF2A2 3'UTR 0.79 TCGA-2H-A9GQ-01 15 74177204 74177204 C T TBC1D21 Silent p.L150L 0.36 TCGA-2H-A9GQ-01 15 83478456 83478456 T G WHAMM 5'UTR 0.31 TCGA-2H-A9GQ-01 15 89398111 89398111 C T ACAN Silent p.G765G 0.49 TCGA-2H-A9GQ-01 15 90328136 90328136 A T ANPEP 3'UTR 0.54 TCGA-2H-A9GQ-01 15 90772747 90772747 C A SEMA4B 3'UTR 0.59 TCGA-2H-A9GQ-01 15 98504124 98504124 G - ARRDC4 Frame_Shift_Del p.G12Vfs*6 0.17 TCGA-2H-A9GQ-01 16 22261980 22261980 C T EEF2K Silent p.F138F 0.23 TCGA-2H-A9GQ-01 16 24227095 24227095 G C PRKCB 3'UTR 0.22 TCGA-2H-A9GQ-01 16 30749528 30749529 CG - SRCAP Frame_Shift_Del p.R2723Hfs*4 0.10 TCGA-2H-A9GQ-01 16 46956203 46956203 A - GPT2 Frame_Shift_Del p.I363Sfs*6 0.24 TCGA-2H-A9GQ-01 16 48337147 48337147 G A LONP2 Missense_Mutation p.A576T 0.31 deleterious(0.01) possibly_damaging(0.624) TCGA-2H-A9GQ-01 16 50827509 50827509 A C CYLD Missense_Mutation p.E801D 0.27 tolerated(0.27) possibly_damaging(0.462) TCGA-2H-A9GQ-01 16 53337639 53337639 G A CHD9 Silent p.V1907V 0.28 TCGA-2H-A9GQ-01 16 57394440 57394440 G A CCL22 Nonsense_Mutation p.W55* 0.60 TCGA-2H-A9GQ-01 16 57691341 57691341 C T GPR56 Silent p.Y408Y 0.42 TCGA-2H-A9GQ-01 16 89972677 89972677 C T TCF25 Silent p.V568V 0.13 TCGA-2H-A9GQ-01 17 36926006 36926006 T A PIP4K2B Missense_Mutation p.T397S 0.45 tolerated(0.07) possibly_damaging(0.865) TCGA-2H-A9GQ-01 17 38253456 38253456 C A NR1D1 Missense_Mutation p.D78Y 0.10 deleterious(0.01) possibly_damaging(0.665) TCGA-2H-A9GQ-01 17 73627067 73627067 T C RECQL5 Silent p.E524E 0.91 TCGA-2H-A9GQ-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.74 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GQ-01 17 79205688 79205688 G A ENTHD2 Silent p.S220S 0.07 TCGA-2H-A9GQ-01 18 14764088 14764088 T C ANKRD30B Silent p.N408N 0.31 TCGA-2H-A9GQ-01 18 31325003 31325003 C A ASXL3 Missense_Mutation p.P1731T 0.37 benign(0.019) TCGA-2H-A9GQ-01 18 34824116 34824125 TCCTTTTTTA CCTTTTTTAT CELF4 3'UTR 0.19 TCGA-2H-A9GQ-01 18 67563060 67563060 C T CD226 Missense_Mutation p.G202R 0.45 tolerated(0.08) probably_damaging(0.984) TCGA-2H-A9GQ-01 18 70532913 70532913 T G NETO1 Intron 0.32 TCGA-2H-A9GQ-01 19 38702417 38702417 C A DPF1 3'UTR 0.32 TCGA-2H-A9GQ-01 19 43359736 43359736 G A PSG10P RNA 0.21 TCGA-2H-A9GQ-01 19 4676632 4676632 C T DPP9 Missense_Mutation p.E875K 0.90 deleterious(0.01) probably_damaging(0.996) TCGA-2H-A9GQ-01 19 49963104 49963104 G T ALDH16A1 Missense_Mutation p.M166I 0.87 tolerated(0.2) benign(0.042) TCGA-2H-A9GQ-01 19 58353430 58353430 A G ZNF587B Intron 0.79 TCGA-2H-A9GQ-01 19 58384289 58384289 A G ZNF814 Silent p.T823T 0.42 TCGA-2H-A9GQ-01 19 8468391 8468391 C T RAB11B Silent p.P202P 0.81 TCGA-2H-A9GQ-01 1 120165820 120165820 G A ZNF697 Silent p.G382G 0.82 TCGA-2H-A9GQ-01 1 145290438 145290438 C T NOTCH2NL 3'Flank 0.07 TCGA-2H-A9GQ-01 1 152285666 152285666 T G FLG Missense_Mutation p.S566R 0.25 probably_damaging(0.987) TCGA-2H-A9GQ-01 1 167400709 167400709 T C CD247 3'UTR 0.12 TCGA-2H-A9GQ-01 1 171482243 171482243 T C PRRC2C Silent p.P72P 0.24 TCGA-2H-A9GQ-01 1 204183072 204183072 G A GOLT1A 5'UTR 0.61 TCGA-2H-A9GQ-01 1 204971813 204971813 C G NFASC Missense_Mutation p.R1076G 0.31 tolerated(0.05) unknown(0) TCGA-2H-A9GQ-01 1 21299476 21299504 AGTAATAAAAATCTCTTACAGTTTTTTTC GTAATAAAAATCTCTTACAGTTTTTT EIF4G3 Splice_Site p.X145_splice 0.18 TCGA-2H-A9GQ-01 1 21299503 21299504 TC - EIF4G3 Frame_Shift_Del p.K147Nfs*12 0.37 TCGA-2H-A9GQ-01 1 216677903 216677903 G T ESRRG 3'UTR 0.49 TCGA-2H-A9GQ-01 1 23857257 23857257 G A E2F2 Missense_Mutation p.S10L 0.12 deleterious_low_confidence(0) benign(0.036) TCGA-2H-A9GQ-01 1 243667872 243667872 G T AKT3 3'UTR 0.64 TCGA-2H-A9GQ-01 1 247040319 247040319 T C AHCTF1 Missense_Mutation p.H966R 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GQ-01 1 40146740 40146740 A T HPCAL4 3'UTR 0.50 TCGA-2H-A9GQ-01 1 46165855 46165855 C T IPP Nonsense_Mutation p.W513* 0.55 TCGA-2H-A9GQ-01 1 54605291 54605291 G A CDCP2 Missense_Mutation p.H418Y 0.57 tolerated_low_confidence(0.25) unknown(0) TCGA-2H-A9GQ-01 1 60377901 60377901 C G CYP2J2 Missense_Mutation p.K152N 0.22 deleterious(0.01) probably_damaging(0.986) TCGA-2H-A9GQ-01 1 78200089 78200089 A C USP33 Missense_Mutation p.L187W 0.59 deleterious(0) probably_damaging(1) TCGA-2H-A9GQ-01 1 9777670 9777670 G T PIK3CD Missense_Mutation p.D336Y 0.69 deleterious(0) possibly_damaging(0.854) TCGA-2H-A9GQ-01 1 9780907 9780907 G A PIK3CD Silent p.P543P 0.37 TCGA-2H-A9GQ-01 1 98510870 98510870 G A MIR137HG Intron 0.72 TCGA-2H-A9GQ-01 20 1146974 1146974 T A PSMF1 3'UTR 0.23 TCGA-2H-A9GQ-01 20 31601666 31601666 C A BPIFB2 Missense_Mutation p.T120N 0.42 deleterious(0.02) possibly_damaging(0.447) TCGA-2H-A9GQ-01 20 35422823 35422823 T C SOGA1 Missense_Mutation p.D1221G 0.43 deleterious(0.02) probably_damaging(0.937) TCGA-2H-A9GQ-01 20 35724277 35724277 C A RBL1 Nonsense_Mutation p.E19* 0.46 TCGA-2H-A9GQ-01 20 50140171 50140171 C T NFATC2 Silent p.P203P 0.50 TCGA-2H-A9GQ-01 20 60908513 60908513 C T LAMA5 Missense_Mutation p.A1016T 0.47 benign(0.391) TCGA-2H-A9GQ-01 20 643343 643343 A T SCRT2 3'UTR 0.29 TCGA-2H-A9GQ-01 20 853726 853726 G A ANGPT4 Silent p.N463N 0.31 TCGA-2H-A9GQ-01 20 9434087 9434087 G C PLCB4 Missense_Mutation p.E980Q 0.62 tolerated(0.14) probably_damaging(0.928) TCGA-2H-A9GQ-01 21 10862950 10862950 G T IGHV1OR21-1 Missense_Mutation p.K82N 0.50 tolerated(0.08) benign(0.065) TCGA-2H-A9GQ-01 21 31691845 31691845 G C KRTAP26-1 Missense_Mutation p.A170G 0.82 tolerated(0.28) benign(0.252) TCGA-2H-A9GQ-01 21 34400681 34400681 C T OLIG2 3'UTR 0.08 TCGA-2H-A9GQ-01 21 45178560 45178560 C T PDXK 3'UTR 0.24 TCGA-2H-A9GQ-01 22 16266948 16266948 C T POTEH Missense_Mutation p.E501K 0.15 tolerated(0.21) benign(0.115) TCGA-2H-A9GQ-01 22 30374971 30374971 G C MTMR3 Missense_Mutation p.R47P 0.10 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GQ-01 22 37491611 37491611 G T TMPRSS6 Missense_Mutation p.A213D 0.25 tolerated(0.57) benign(0.017) TCGA-2H-A9GQ-01 22 41755910 41755910 C T ZC3H7B 3'UTR 0.77 TCGA-2H-A9GQ-01 2 139322275 139322275 T A SPOPL Intron 0.27 TCGA-2H-A9GQ-01 2 168105148 168105148 A T XIRP2 Missense_Mutation p.T2416S 0.37 benign(0.001) TCGA-2H-A9GQ-01 2 170940021 170940021 C T UBR3 3'UTR 0.64 TCGA-2H-A9GQ-01 2 180307348 180307348 A G ZNF385B 3'UTR 0.21 TCGA-2H-A9GQ-01 2 189870168 189870168 T A COL3A1 Silent p.G1008G 0.11 TCGA-2H-A9GQ-01 2 191077701 191077701 C T HIBCH Missense_Mutation p.R331Q 0.58 deleterious(0.01) possibly_damaging(0.684) TCGA-2H-A9GQ-01 2 192711698 192711698 C G SDPR 5'UTR 0.61 TCGA-2H-A9GQ-01 2 197002222 197002222 G C STK17B Missense_Mutation p.F356L 0.65 deleterious(0.02) probably_damaging(0.97) TCGA-2H-A9GQ-01 2 219747123 219747123 T C WNT10A Silent p.Y118Y 0.67 TCGA-2H-A9GQ-01 2 223085050 223085050 C T PAX3 Missense_Mutation p.V328I 0.62 deleterious(0.01) possibly_damaging(0.803) TCGA-2H-A9GQ-01 2 225672674 225672674 T C DOCK10 Missense_Mutation p.K1180R 0.37 tolerated(0.28) benign(0.049) TCGA-2H-A9GQ-01 2 234601834 234601834 G A UGT1A6 Missense_Mutation p.E62K 0.24 deleterious(0.03) benign(0.143) TCGA-2H-A9GQ-01 2 242089933 242089933 G A PPP1R7 Missense_Mutation p.G8E 0.46 tolerated_low_confidence(0.43) benign(0.293) TCGA-2H-A9GQ-01 2 26536332 26536332 C T GPR113 Silent p.R462R 0.49 TCGA-2H-A9GQ-01 2 32640482 32640482 C T BIRC6 Missense_Mutation p.S708F 0.26 possibly_damaging(0.641) TCGA-2H-A9GQ-01 2 33953082 33953082 C G AC009499.1 Intron 0.15 TCGA-2H-A9GQ-01 2 51255171 51255171 G T NRXN1 Missense_Mutation p.L81M 0.29 deleterious(0.01) probably_damaging(1) TCGA-2H-A9GQ-01 2 54483354 54483354 C T TSPYL6 5'UTR 0.26 TCGA-2H-A9GQ-01 2 61510280 61510280 C G USP34 Missense_Mutation p.E1666D 0.56 tolerated(0.13) benign(0.365) TCGA-2H-A9GQ-01 2 61575959 61575959 C T USP34 Missense_Mutation p.D536N 0.70 deleterious_low_confidence(0.02) probably_damaging(0.98) TCGA-2H-A9GQ-01 2 67631408 67631408 C G ETAA1 Missense_Mutation p.Q532E 0.44 deleterious(0.02) possibly_damaging(0.544) TCGA-2H-A9GQ-01 2 99977778 99977778 T C EIF5B Silent p.D138D 0.28 TCGA-2H-A9GQ-01 3 122152584 122152584 C A KPNA1 Missense_Mutation p.A392S 0.38 tolerated(0.06) possibly_damaging(0.696) TCGA-2H-A9GQ-01 3 124950598 124950598 T C ZNF148 3'UTR 0.39 TCGA-2H-A9GQ-01 3 124952122 124952122 T A ZNF148 Missense_Mutation p.N483I 0.33 deleterious(0) benign(0.243) TCGA-2H-A9GQ-01 3 134079164 134079164 T C AMOTL2 Missense_Mutation p.E556G 0.38 deleterious(0.03) probably_damaging(0.999) TCGA-2H-A9GQ-01 3 138191618 138191618 C A ESYT3 Silent p.P718P 0.40 TCGA-2H-A9GQ-01 3 186387733 186387733 G C HRG Missense_Mutation p.G103R 0.43 deleterious(0.02) probably_damaging(0.989) TCGA-2H-A9GQ-01 3 30664745 30664745 C T TGFBR2 Missense_Mutation p.T50I 0.36 tolerated_low_confidence(0.09) benign(0) TCGA-2H-A9GQ-01 3 35750536 35750536 G C ARPP21 Intron 0.36 TCGA-2H-A9GQ-01 3 38168072 38168072 C T ACAA1 Missense_Mutation p.R249H 0.41 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GQ-01 3 48697431 48697431 G A CELSR3 Silent p.V879V 0.10 TCGA-2H-A9GQ-01 3 49162887 49162887 C T LAMB2 Missense_Mutation p.S840N 0.15 tolerated(0.37) benign(0.053) TCGA-2H-A9GQ-01 3 57124043 57124043 C G IL17RD 3'UTR 0.44 TCGA-2H-A9GQ-01 4 104097163 104097163 G C CENPE Missense_Mutation p.T478R 0.38 benign(0.372) TCGA-2H-A9GQ-01 4 125593618 125593618 G T ANKRD50 Missense_Mutation p.H272N 0.44 tolerated(0.33) benign(0.006) TCGA-2H-A9GQ-01 4 141580817 141580817 C T TBC1D9 Missense_Mutation p.E616K 0.38 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GQ-01 4 177604704 177604704 C T VEGFC 3'UTR 0.34 TCGA-2H-A9GQ-01 4 2956223 2956223 G A NOP14 Silent p.G180G 0.86 TCGA-2H-A9GQ-01 4 3030968 3030968 C T GRK4 Silent p.P367P 0.86 TCGA-2H-A9GQ-01 4 38797931 38797931 C T TLR1 3'UTR 0.45 TCGA-2H-A9GQ-01 4 57180699 57180699 G A KIAA1211 Missense_Mutation p.R344Q 0.40 tolerated(0.95) unknown(0) TCGA-2H-A9GQ-01 4 6885168 6885168 T A KIAA0232 3'UTR 0.44 TCGA-2H-A9GQ-01 4 73147108 73147108 T G ADAMTS3 3'UTR 0.52 TCGA-2H-A9GQ-01 4 80329142 80329142 C T GK2 Silent p.T71T 0.38 TCGA-2H-A9GQ-01 4 8605848 8605848 G A CPZ Silent p.G214G 0.65 TCGA-2H-A9GQ-01 5 122435415 122435415 G A PRDM6 Missense_Mutation p.R220H 0.09 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GQ-01 5 140182192 140182192 G A PCDHA3 Silent p.P470P 0.38 TCGA-2H-A9GQ-01 5 140856511 140856511 C T PCDHGC3 Silent p.N276N 0.32 TCGA-2H-A9GQ-01 5 147012329 147012329 C G JAKMIP2 Missense_Mutation p.E564Q 0.37 tolerated(0.08) benign(0.282) TCGA-2H-A9GQ-01 5 148407322 148407322 C T SH3TC2 Missense_Mutation p.R658H 0.42 tolerated(0.34) benign(0.332) TCGA-2H-A9GQ-01 5 24487316 24487316 C T CDH10 3'UTR 0.19 TCGA-2H-A9GQ-01 5 32791304 32791304 T G NPR3 3'UTR 0.25 TCGA-2H-A9GQ-01 5 34020796 34020796 C A C1QTNF3 Missense_Mutation p.K284N 0.20 tolerated(0.09) possibly_damaging(0.867) TCGA-2H-A9GQ-01 5 82816505 82816505 A C VCAN Missense_Mutation p.S794R 0.25 deleterious(0.03) benign(0.003) TCGA-2H-A9GQ-01 5 86564473 86564474 - C RASA1 Frame_Shift_Ins p.E70Rfs*42 0.35 TCGA-2H-A9GQ-01 5 88018583 88018583 A T MEF2C Silent p.P430P 0.41 TCGA-2H-A9GQ-01 5 9629139 9629139 C A TAS2R1 3'UTR 0.41 TCGA-2H-A9GQ-01 6 10697578 10697578 T G PAK1IP1 Missense_Mutation p.F36V 0.45 deleterious(0) probably_damaging(1) TCGA-2H-A9GQ-01 6 11104020 11104020 G C ERVFRD-1 Silent p.T508T 0.19 TCGA-2H-A9GQ-01 6 119137014 119137014 G A MCM9 Missense_Mutation p.S802L 0.19 deleterious_low_confidence(0.04) benign(0.009) TCGA-2H-A9GQ-01 6 138657565 138657565 G A KIAA1244 Missense_Mutation p.R2159H 0.53 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GQ-01 6 148870543 148870550 GTGCGTGC - SASH1 3'UTR 0.52 TCGA-2H-A9GQ-01 6 152746668 152746668 T C SYNE1 Silent p.E1705E 0.55 TCGA-2H-A9GQ-01 6 152751730 152751730 A C SYNE1 Missense_Mutation p.L1526V 0.17 possibly_damaging(0.556) TCGA-2H-A9GQ-01 6 159458021 159458021 G A TAGAP Missense_Mutation p.A345V 0.59 tolerated(0.12) benign(0.026) TCGA-2H-A9GQ-01 6 26205150 26205150 G C HIST1H4E Missense_Mutation p.R93T 0.21 deleterious(0) probably_damaging(0.992) TCGA-2H-A9GQ-01 6 30140253 30140253 C T TRIM15 3'UTR 0.27 TCGA-2H-A9GQ-01 6 32948937 32948938 - T BRD2 3'UTR 0.37 TCGA-2H-A9GQ-01 6 33170809 33170809 G A SLC39A7 Missense_Mutation p.V355I 0.22 tolerated(1) possibly_damaging(0.665) TCGA-2H-A9GQ-01 6 35763554 35763554 G A CLPS Missense_Mutation p.A54V 0.06 deleterious(0.01) probably_damaging(0.957) TCGA-2H-A9GQ-01 6 43254918 43254918 C T TTBK1 3'UTR 0.52 TCGA-2H-A9GQ-01 6 52550924 52550924 G A TMEM14A 3'UTR 0.42 TCGA-2H-A9GQ-01 6 96651269 96651269 A T FUT9 Missense_Mutation p.T80S 0.35 tolerated(0.57) benign(0.001) TCGA-2H-A9GQ-01 7 136555859 136555859 A C CHRM2 Intron 0.54 TCGA-2H-A9GQ-01 7 64169144 64169144 G A ZNF107 3'UTR 0.27 TCGA-2H-A9GQ-01 8 120795685 120795685 T G TAF2 Missense_Mutation p.D683A 0.25 deleterious(0) possibly_damaging(0.688) TCGA-2H-A9GQ-01 8 1497705 1497705 C T DLGAP2 Silent p.D282D 0.21 TCGA-2H-A9GQ-01 8 2813198 2813198 G - CSMD1 Frame_Shift_Del p.H3303Ifs*19 0.40 TCGA-2H-A9GQ-01 8 38239501 38239548 GGCCGGCACTGAGGAGGGCCACGGCCGGGCCGGGCCGGGCGTGCTGCG AGAGGAAGA WHSC1L1 5'UTR 0.30 TCGA-2H-A9GQ-01 8 48866998 48866998 C T PRKDC Silent p.Q136Q 0.37 TCGA-2H-A9GQ-01 8 56879419 56879419 G A LYN Silent p.E312E 0.11 TCGA-2H-A9GQ-01 9 128088742 128088742 C T GAPVD1 Missense_Mutation p.R636C 0.45 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GQ-01 9 140007435 140007435 G A DPP7 Silent p.F280F 0.18 TCGA-2H-A9GQ-01 9 18474177 18474177 G C ADAMTSL1 5'UTR 0.45 TCGA-2H-A9GQ-01 9 21970894 21970901 TCCTCACC - CDKN2A Splice_Site p.X153_splice 0.60 TCGA-2H-A9GQ-01 9 25678449 25678449 G C TUSC1 5'UTR 0.40 TCGA-2H-A9GQ-01 9 32629963 32629963 C T TAF1L 3'UTR 0.39 TCGA-2H-A9GQ-01 9 3266289 3266289 G A RFX3 Silent p.A458A 0.63 TCGA-2H-A9GQ-01 9 74061672 74061672 C T TRPM3 Missense_Mutation p.R27H 0.56 tolerated_low_confidence(0.2) benign(0.108) TCGA-2H-A9GQ-01 9 84608189 84608189 T C SPATA31D1 Missense_Mutation p.L935P 0.54 tolerated(0.23) benign(0.004) TCGA-2H-A9GQ-01 9 94499701 94499701 C T ROR2 Missense_Mutation p.M198I 0.68 tolerated(0.08) benign(0.243) TCGA-2H-A9GQ-01 9 97063005 97063005 C T ZNF169 Missense_Mutation p.L389F 0.16 deleterious(0.04) probably_damaging(0.988) TCGA-2H-A9GQ-01 9 97082712 97082712 C T NUTM2F Silent p.A382A 0.55 TCGA-2H-A9GQ-01 X 129629016 129629016 A G RP1-274L7.1 Intron 0.82 TCGA-2H-A9GQ-01 X 1407659 1407659 G A CSF2RA Silent p.E117E 0.82 TCGA-2H-A9GQ-01 X 152835148 152835148 G A ATP2B3 Intron 0.90 TCGA-2H-A9GQ-01 X 23722811 23722811 C T ACOT9 Missense_Mutation p.E420K 0.95 deleterious(0) possibly_damaging(0.587) TCGA-2H-A9GQ-01 X 30327395 30327395 G A NR0B1 Missense_Mutation p.A29V 0.82 tolerated_low_confidence(0.09) benign(0.062) TCGA-2H-A9GQ-01 X 36385232 36385232 A G CXorf30 Missense_Mutation p.S505G 0.83 tolerated(0.07) benign(0.311) TCGA-2H-A9GQ-01 X 55479335 55479335 C T MAGEH1 Silent p.V176V 0.40 TCGA-2H-A9GR-01 10 104126909 104126909 T C GBF1 Missense_Mutation p.L833P 0.10 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 10 106209896 106209896 T C CCDC147 Missense_Mutation p.L815P 0.19 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GR-01 10 107024568 107024568 A G SORCS3 3'UTR 0.30 TCGA-2H-A9GR-01 10 122216841 122216841 C T PPAPDC1A Silent p.I8I 0.09 TCGA-2H-A9GR-01 10 122668314 122668314 G A WDR11 3'UTR 0.07 TCGA-2H-A9GR-01 10 122668424 122668428 GAAAG CAAAAA WDR11 3'UTR 0.18 TCGA-2H-A9GR-01 10 124755553 124755553 G T IKZF5 Missense_Mutation p.S91R 0.24 deleterious(0.04) benign(0.245) TCGA-2H-A9GR-01 10 125506303 125506303 G A CPXM2 Nonsense_Mutation p.Q750* 0.17 TCGA-2H-A9GR-01 10 12866507 12866507 G A CAMK1D Missense_Mutation p.V293I 0.14 tolerated(0.14) benign(0.102) TCGA-2H-A9GR-01 10 135103368 135103368 C T TUBGCP2 Silent p.P468P 0.14 TCGA-2H-A9GR-01 10 15098958 15098958 T C OLAH Missense_Mutation p.L100P 0.14 tolerated_low_confidence(0.05) benign(0.266) TCGA-2H-A9GR-01 10 21076223 21076223 C T NEBL Missense_Mutation p.G926R 0.12 tolerated(0.17) probably_damaging(0.98) TCGA-2H-A9GR-01 10 42831838 42831838 T G RP11-313J2.1 RNA 0.32 TCGA-2H-A9GR-01 10 50034854 50034854 T C WDFY4 Missense_Mutation p.F2041L 0.13 tolerated(0.22) benign(0.025) TCGA-2H-A9GR-01 10 50121941 50121941 T G LRRC18 Missense_Mutation p.K87T 0.34 tolerated(0.14) benign(0.044) TCGA-2H-A9GR-01 10 51087723 51087723 T G PARG Missense_Mutation p.N177H 0.10 tolerated(0.11) probably_damaging(0.985) TCGA-2H-A9GR-01 10 51465015 51465015 C A AGAP7 Missense_Mutation p.G481C 0.19 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 10 55581039 55581039 A C PCDH15 3'UTR 0.32 TCGA-2H-A9GR-01 10 60566769 60566769 T G BICC1 Missense_Mutation p.L743V 0.32 tolerated(0.6) possibly_damaging(0.497) TCGA-2H-A9GR-01 10 61829130 61829130 C A ANK3 Nonsense_Mutation p.G3837* 0.07 TCGA-2H-A9GR-01 10 63170312 63170312 T G TMEM26 Missense_Mutation p.K292T 0.33 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 10 78704539 78704539 T G KCNMA1 Missense_Mutation p.N948T 0.11 tolerated(0.32) benign(0.098) TCGA-2H-A9GR-01 10 8116499 8116500 - C GATA3 3'UTR 0.35 TCGA-2H-A9GR-01 10 88729791 88729791 C T ADIRF Intron 0.20 TCGA-2H-A9GR-01 10 99344568 99344568 G A PI4K2A Silent p.A36A 0.15 TCGA-2H-A9GR-01 10 99696050 99696050 G A CRTAC1 Missense_Mutation p.R100C 0.19 deleterious(0.04) probably_damaging(0.91) TCGA-2H-A9GR-01 11 103908222 103908222 A T DDI1 Missense_Mutation p.E224D 0.29 tolerated(0.19) benign(0.105) TCGA-2H-A9GR-01 11 105851829 105851829 T C GRIA4 3'UTR 0.21 TCGA-2H-A9GR-01 11 107673867 107673867 C T SLC35F2 Missense_Mutation p.A267T 0.08 tolerated(0.12) benign(0.215) TCGA-2H-A9GR-01 11 122650316 122650316 T G UBASH3B Missense_Mutation p.F172V 0.17 deleterious(0.01) possibly_damaging(0.637) TCGA-2H-A9GR-01 11 132290138 132290138 A T OPCML Silent p.A329A 0.30 TCGA-2H-A9GR-01 11 20940867 20940867 A C NELL1 Missense_Mutation p.K249T 0.17 deleterious(0) probably_damaging(0.986) TCGA-2H-A9GR-01 11 212445 212445 C T RIC8A Silent p.P333P 0.27 TCGA-2H-A9GR-01 11 36598621 36598621 T - RAG1 3'UTR 0.11 TCGA-2H-A9GR-01 11 43513624 43513624 G A TTC17 Missense_Mutation p.D1069N 0.10 deleterious(0.01) benign(0.047) TCGA-2H-A9GR-01 11 43877504 43877504 A C HSD17B12 3'UTR 0.23 TCGA-2H-A9GR-01 11 4510952 4510952 C A OR52K1 Silent p.V274V 0.18 TCGA-2H-A9GR-01 11 49192783 49192783 T G FOLH1 Missense_Mutation p.E424D 0.19 deleterious(0) possibly_damaging(0.885) TCGA-2H-A9GR-01 11 4945125 4945125 T G OR51G1 Missense_Mutation p.S149R 0.41 deleterious(0.01) benign(0.319) TCGA-2H-A9GR-01 11 50003726 50003726 A T OR4C12 Silent p.I104I 0.11 TCGA-2H-A9GR-01 11 5153403 5153403 A G OR52A5 Missense_Mutation p.L157P 0.16 deleterious(0) probably_damaging(0.982) TCGA-2H-A9GR-01 11 55340513 55340513 T G OR4C16 Missense_Mutation p.L304V 0.17 tolerated(0.68) benign(0.008) TCGA-2H-A9GR-01 11 55563498 55563498 T G OR5D14 Missense_Mutation p.F156C 0.24 deleterious(0.02) possibly_damaging(0.84) TCGA-2H-A9GR-01 11 55579377 55579377 T G OR5L1 Silent p.A145A 0.30 TCGA-2H-A9GR-01 11 6048648 6048648 A C OR56A1 Missense_Mutation p.L96R 0.31 tolerated(0.34) benign(0.004) TCGA-2H-A9GR-01 11 64428468 64428468 C T NRXN2 Missense_Mutation p.A648T 0.07 deleterious(0.02) benign(0.038) TCGA-2H-A9GR-01 11 64707232 64707232 C T C11orf85 Missense_Mutation p.S185N 0.32 tolerated_low_confidence(0.12) benign(0.188) TCGA-2H-A9GR-01 11 6578354 6578354 C T DNHD1 Missense_Mutation p.S2610F 0.29 possibly_damaging(0.569) TCGA-2H-A9GR-01 11 6736880 6736880 T C GVINP1 RNA 0.16 TCGA-2H-A9GR-01 11 83170055 83170055 A G DLG2 3'UTR 0.14 TCGA-2H-A9GR-01 11 88924562 88924562 T G TYR Missense_Mutation p.F338V 0.17 tolerated(0.54) possibly_damaging(0.527) TCGA-2H-A9GR-01 11 92534684 92534684 A G FAT3 Silent p.Q2835Q 0.29 TCGA-2H-A9GR-01 11 93844876 93844876 A G HEPHL1 Missense_Mutation p.Q1099R 0.12 tolerated(0.22) benign(0.021) TCGA-2H-A9GR-01 12 10194075 10194075 A G CLEC9A 5'UTR 0.16 TCGA-2H-A9GR-01 12 10280446 10280446 T A CLEC7A Splice_Site p.X35_splice 0.43 TCGA-2H-A9GR-01 12 104098353 104098353 C T STAB2 Silent p.C1287C 0.16 TCGA-2H-A9GR-01 12 109181748 109181748 C T SSH1 3'UTR 0.14 TCGA-2H-A9GR-01 12 109865375 109865375 G A MYO1H Missense_Mutation p.E629K 0.09 deleterious(0.03) possibly_damaging(0.729) TCGA-2H-A9GR-01 12 113770677 113770677 C T SLC8B1 Missense_Mutation p.G3S 0.11 tolerated_low_confidence(0.58) benign(0.004) TCGA-2H-A9GR-01 12 121706470 121706470 T G CAMKK2 Missense_Mutation p.K199T 0.12 tolerated(0.08) benign(0.043) TCGA-2H-A9GR-01 12 130882939 130882939 G T RIMBP2 3'UTR 0.46 TCGA-2H-A9GR-01 12 21011399 21011399 A C LST3 Missense_Mutation p.S85R 0.38 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GR-01 12 21172304 21172304 T G SLCO1B7 Missense_Mutation p.F70V 0.22 deleterious(0) possibly_damaging(0.852) TCGA-2H-A9GR-01 12 39994435 39994435 C T ABCD2 Nonsense_Mutation p.W528* 0.12 TCGA-2H-A9GR-01 12 40672053 40672053 T C LRRK2 Missense_Mutation p.L744S 0.21 deleterious(0.02) probably_damaging(0.999) TCGA-2H-A9GR-01 12 41327548 41327548 A - CNTN1 Frame_Shift_Del p.T285Lfs*18 0.13 TCGA-2H-A9GR-01 12 48437432 48437435 GAAA - SENP1 3'UTR 0.14 TCGA-2H-A9GR-01 12 53069104 53069104 C T KRT1 Missense_Mutation p.G603D 0.20 tolerated_low_confidence(0.1) unknown(0) TCGA-2H-A9GR-01 12 55026095 55026095 C T LACRT Silent p.Q61Q 0.19 TCGA-2H-A9GR-01 12 55688195 55688195 C T OR6C6 Silent p.L274L 0.12 TCGA-2H-A9GR-01 12 57113631 57113631 C T NACA Silent p.P561P 0.28 TCGA-2H-A9GR-01 12 57587708 57587708 C T LRP1 Missense_Mutation p.R2611C 0.12 possibly_damaging(0.567) TCGA-2H-A9GR-01 12 72164387 72164387 G C RAB21 Missense_Mutation p.E79Q 0.27 deleterious(0.04) possibly_damaging(0.897) TCGA-2H-A9GR-01 12 72680620 72680620 A C TRHDE Missense_Mutation p.E313D 0.30 tolerated(0.42) probably_damaging(0.935) TCGA-2H-A9GR-01 12 73058144 73058144 G A TRHDE 3'UTR 0.15 TCGA-2H-A9GR-01 12 80772775 80772775 T G OTOGL 3'UTR 0.21 TCGA-2H-A9GR-01 12 81545617 81545617 C G ACSS3 Intron 0.20 TCGA-2H-A9GR-01 12 85459153 85459153 C A LRRIQ1 Missense_Mutation p.S835R 0.32 deleterious(0) possibly_damaging(0.878) TCGA-2H-A9GR-01 12 9394644 9394644 C T LINC00987 RNA 0.12 TCGA-2H-A9GR-01 12 96350667 96350667 G A AMDHD1 Missense_Mutation p.V172M 0.14 deleterious(0) probably_damaging(0.995) TCGA-2H-A9GR-01 13 101763024 101763024 T G NALCN Silent p.G770G 0.37 TCGA-2H-A9GR-01 13 101997673 101997673 A C NALCN Missense_Mutation p.L248R 0.30 deleterious(0) probably_damaging(0.997) TCGA-2H-A9GR-01 13 106142220 106142220 C A DAOA Intron 0.07 TCGA-2H-A9GR-01 13 28880827 28880827 G A FLT1 Missense_Mutation p.S1268L 0.45 tolerated(0.12) benign(0.003) TCGA-2H-A9GR-01 13 38158981 38158981 T C POSTN Missense_Mutation p.N327S 0.40 tolerated(1) benign(0.021) TCGA-2H-A9GR-01 13 67205467 67205467 T C PCDH9 Missense_Mutation p.E1072G 0.15 deleterious(0) benign(0.017) TCGA-2H-A9GR-01 13 70456449 70456449 A T KLHL1 Missense_Mutation p.L398H 0.24 deleterious(0) probably_damaging(0.986) TCGA-2H-A9GR-01 13 72014341 72014341 C T DACH1 3'UTR 0.20 TCGA-2H-A9GR-01 14 104152014 104152014 C T KLC1 Intron 0.19 TCGA-2H-A9GR-01 14 106090953 106090953 C T IGHG4 Missense_Mutation p.G282S 0.12 tolerated(0.16) probably_damaging(0.931) TCGA-2H-A9GR-01 14 19378261 19378261 T G OR11H12 Missense_Mutation p.F223C 0.15 deleterious(0) probably_damaging(0.964) TCGA-2H-A9GR-01 14 24109023 24109023 C T DHRS2 Silent p.G113G 0.17 TCGA-2H-A9GR-01 14 24641929 24641929 G T REC8 Missense_Mutation p.A22S 0.16 deleterious(0) probably_damaging(0.969) TCGA-2H-A9GR-01 14 26916560 26916560 A G NOVA1 3'UTR 0.17 TCGA-2H-A9GR-01 14 30045980 30045980 T G PRKD1 3'UTR 0.23 TCGA-2H-A9GR-01 14 39652171 39652181 TTAACTTTCTG A PNN 3'UTR 0.11 TCGA-2H-A9GR-01 14 47310709 47310709 T G MDGA2 3'UTR 0.12 TCGA-2H-A9GR-01 14 47351346 47351346 A C MDGA2 Missense_Mutation p.L773V 0.32 tolerated(0.08) probably_damaging(0.997) TCGA-2H-A9GR-01 14 51489642 51489642 C A TRIM9 Missense_Mutation p.A318S 0.09 tolerated(0.06) benign(0.254) TCGA-2H-A9GR-01 14 76669084 76669084 C A GPATCH2L 3'UTR 0.09 TCGA-2H-A9GR-01 15 22332690 22332690 T C RP11-69H14.6 RNA 0.10 TCGA-2H-A9GR-01 15 22332761 22332761 T G RP11-69H14.6 RNA 0.37 TCGA-2H-A9GR-01 15 23114224 23114224 C T RP11-566K19.6 RNA 0.06 TCGA-2H-A9GR-01 15 23931491 23931491 A G NDN Missense_Mutation p.S292P 0.11 deleterious(0.03) possibly_damaging(0.697) TCGA-2H-A9GR-01 15 25219561 25219561 A C SNRPN 5'UTR 0.30 TCGA-2H-A9GR-01 15 25223584 25223584 G C SNRPN Missense_Mutation p.R239T 0.20 deleterious_low_confidence(0) unknown(0) TCGA-2H-A9GR-01 15 25427611 25427611 C T SNORD115-6 3'Flank 0.07 TCGA-2H-A9GR-01 15 25430680 25430680 T G SNORD115-10 5'Flank 0.33 TCGA-2H-A9GR-01 15 25438367 25438367 A G SNORD115-11 3'Flank 0.09 TCGA-2H-A9GR-01 15 25616050 25616050 G A UBE3A Missense_Mutation p.P427L 0.23 tolerated(0.08) benign(0.049) TCGA-2H-A9GR-01 15 33922209 33922209 G A RYR3 Silent p.K916K 0.14 TCGA-2H-A9GR-01 15 34102717 34102717 G A RYR3 Missense_Mutation p.R3355Q 0.20 possibly_damaging(0.82) TCGA-2H-A9GR-01 15 41247939 41247939 C G CHAC1 Missense_Mutation p.F254L 0.25 tolerated(0.42) benign(0.002) TCGA-2H-A9GR-01 15 48063701 48063701 T G SEMA6D Missense_Mutation p.L981V 0.12 tolerated(0.89) benign(0.001) TCGA-2H-A9GR-01 15 48784701 48784701 A T FBN1 Nonsense_Mutation p.C937* 0.12 TCGA-2H-A9GR-01 15 54003588 54003588 T C WDR72 Missense_Mutation p.R268G 0.15 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 15 54838937 54838937 A C UNC13C Missense_Mutation p.K1905T 0.34 tolerated_low_confidence(0.27) possibly_damaging(0.903) TCGA-2H-A9GR-01 15 91454615 91454615 G A MAN2A2 Silent p.R648R 0.09 TCGA-2H-A9GR-01 15 93588441 93588441 G A RGMA Silent p.F388F 0.07 TCGA-2H-A9GR-01 16 1547508 1547508 G C TELO2 Missense_Mutation p.G277R 0.12 tolerated(0.18) benign(0.029) TCGA-2H-A9GR-01 16 21716385 21716385 C T OTOA Intron 0.12 TCGA-2H-A9GR-01 16 23079306 23079306 A G USP31 3'UTR 0.09 TCGA-2H-A9GR-01 16 2336804 2336804 C T ABCA3 Missense_Mutation p.V1057M 0.15 deleterious(0) benign(0.094) TCGA-2H-A9GR-01 16 277374 277374 C G LUC7L Intron 0.08 TCGA-2H-A9GR-01 16 29678505 29678505 A C SPN 3'UTR 0.16 TCGA-2H-A9GR-01 16 32890751 32890751 C T SLC6A10P Splice_Site 0.07 TCGA-2H-A9GR-01 16 34739612 34739612 C A RP11-80F22.15 RNA 0.08 TCGA-2H-A9GR-01 16 51173021 51173021 A C SALL1 Missense_Mutation p.F1038V 0.09 tolerated(0.07) probably_damaging(0.909) TCGA-2H-A9GR-01 16 65026864 65026864 G A CDH11 Silent p.Y199Y 0.27 TCGA-2H-A9GR-01 16 67329211 67329211 A G KCTD19 Missense_Mutation p.L449P 0.14 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 16 69349993 69349993 C T VPS4A Missense_Mutation p.A35V 0.18 deleterious(0) possibly_damaging(0.532) TCGA-2H-A9GR-01 16 73127474 73127474 C A HCCAT5 RNA 0.19 TCGA-2H-A9GR-01 16 76486645 76486645 T G CNTNAP4 Missense_Mutation p.L365V 0.39 tolerated(0.46) benign(0.004) TCGA-2H-A9GR-01 16 88941359 88941359 C T CBFA2T3 3'UTR 0.08 TCGA-2H-A9GR-01 16 9858168 9858168 T G GRIN2A Missense_Mutation p.K1078T 0.34 deleterious(0.02) probably_damaging(0.984) TCGA-2H-A9GR-01 17 1641847 1641847 T C WDR81 3'UTR 0.25 TCGA-2H-A9GR-01 17 26727149 26727149 G T SARM1 3'UTR 0.15 TCGA-2H-A9GR-01 17 31350878 31350878 C T ASIC2 Splice_Site p.X450_splice 0.27 TCGA-2H-A9GR-01 17 36688660 36688660 A T SRCIN1 3'UTR 0.24 TCGA-2H-A9GR-01 17 38784646 38784646 A G SMARCE1 3'UTR 0.07 TCGA-2H-A9GR-01 17 38904489 38904489 G A KRT25 3'UTR 0.07 TCGA-2H-A9GR-01 17 39155687 39155687 A C KRTAP3-2 3'UTR 0.25 TCGA-2H-A9GR-01 17 46690526 46690526 G A HOXB8 3'UTR 0.12 TCGA-2H-A9GR-01 17 50212244 50212244 T C CA10 Intron 0.15 TCGA-2H-A9GR-01 17 51902473 51902473 T G KIF2B 3'UTR 0.32 TCGA-2H-A9GR-01 17 55027375 55027375 G A COIL Missense_Mutation p.R410W 0.07 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 17 56393449 56393449 A C BZRAP1 Missense_Mutation p.L678R 0.14 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 17 68130532 68130532 A G KCNJ16 3'UTR 0.21 TCGA-2H-A9GR-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.40 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GR-01 17 80895742 80895742 T G TBCD Intron 0.28 TCGA-2H-A9GR-01 18 11852337 11852337 G A CHMP1B 3'UTR 0.23 TCGA-2H-A9GR-01 18 11852338 11852338 C T CHMP1B 3'UTR 0.23 TCGA-2H-A9GR-01 18 13426021 13426021 G A LDLRAD4 Intron 0.12 TCGA-2H-A9GR-01 18 31323952 31323952 A G ASXL3 Silent p.E1380E 0.26 TCGA-2H-A9GR-01 18 34824834 34824834 A C CELF4 3'UTR 0.21 TCGA-2H-A9GR-01 18 58039107 58039107 T G MC4R Missense_Mutation p.N159T 0.40 deleterious(0.03) benign(0.005) TCGA-2H-A9GR-01 18 6171934 6171934 A C L3MBTL4 Missense_Mutation p.F330C 0.34 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 18 6914869 6914869 T G ARHGAP28 3'UTR 0.37 TCGA-2H-A9GR-01 18 6983112 6983112 T G LAMA1 Missense_Mutation p.T1928P 0.09 tolerated(0.08) benign(0.106) TCGA-2H-A9GR-01 18 7010267 7010267 C G LAMA1 Missense_Mutation p.V1269L 0.05 tolerated(0.1) benign(0.259) TCGA-2H-A9GR-01 18 7038890 7038890 T G LAMA1 Missense_Mutation p.E494D 0.61 tolerated(0.08) benign(0.03) TCGA-2H-A9GR-01 18 70451035 70451035 T G NETO1 Missense_Mutation p.K249T 0.42 tolerated(0.07) benign(0.304) TCGA-2H-A9GR-01 18 70526302 70526302 T G NETO1 Silent p.P76P 0.24 TCGA-2H-A9GR-01 18 72775418 72775418 C T ZNF407 Missense_Mutation p.T1914M 0.11 deleterious(0) possibly_damaging(0.549) TCGA-2H-A9GR-01 18 72776180 72776180 C T ZNF407 Missense_Mutation p.T2168M 0.17 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GR-01 18 76753580 76753580 T G SALL3 Missense_Mutation p.L530R 0.29 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GR-01 18 77097384 77097384 G A ATP9B Missense_Mutation p.V740M 0.31 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 18 77805976 77805976 C T RBFA Missense_Mutation p.R285C 0.22 tolerated(0.21) benign(0.002) TCGA-2H-A9GR-01 19 11891521 11891521 C G ZNF441 Missense_Mutation p.S294R 0.17 deleterious(0.05) possibly_damaging(0.637) TCGA-2H-A9GR-01 19 14139096 14139096 C T RLN3 Missense_Mutation p.A27V 0.15 tolerated(0.13) benign(0.045) TCGA-2H-A9GR-01 19 1506761 1506761 G A ADAMTSL5 Missense_Mutation p.A340V 0.23 tolerated(0.26) benign(0.011) TCGA-2H-A9GR-01 19 15990622 15990622 G A CYP4F2 Missense_Mutation p.H401Y 0.08 tolerated(1) benign(0) TCGA-2H-A9GR-01 19 18507851 18507851 G T LRRC25 5'UTR 0.31 TCGA-2H-A9GR-01 19 1853859 1853859 C A KLF16 3'UTR 0.20 TCGA-2H-A9GR-01 19 19745634 19745634 G C GMIP Missense_Mutation p.D618E 0.25 deleterious(0.03) probably_damaging(1) TCGA-2H-A9GR-01 19 21608808 21608808 G A ZNF493 3'UTR 0.08 TCGA-2H-A9GR-01 19 21719663 21719663 T G ZNF429 Missense_Mutation p.S270A 0.34 tolerated(0.07) possibly_damaging(0.904) TCGA-2H-A9GR-01 19 22585671 22585671 T G ZNF98 Missense_Mutation p.K58T 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-2H-A9GR-01 19 22786049 22786049 C T AC011467.1 3'Flank 0.11 TCGA-2H-A9GR-01 19 22848044 22848044 A C ZNF492 Silent p.R525R 0.16 TCGA-2H-A9GR-01 19 35550814 35550814 G A HPN Silent p.A109A 0.09 TCGA-2H-A9GR-01 19 36046578 36046578 T G ATP4A Missense_Mutation p.K669T 0.18 deleterious(0.04) benign(0.001) TCGA-2H-A9GR-01 19 36592164 36592164 C T WDR62 Silent p.G972G 0.14 TCGA-2H-A9GR-01 19 37118522 37118522 G A ZNF382 3'UTR 0.23 TCGA-2H-A9GR-01 19 37370455 37370455 A C ZNF345 3'UTR 0.41 TCGA-2H-A9GR-01 19 3819165 3819165 C T ZFR2 Silent p.T603T 0.30 TCGA-2H-A9GR-01 19 40742171 40742171 G A AKT2 Missense_Mutation p.A318V 0.17 deleterious(0.02) probably_damaging(1) TCGA-2H-A9GR-01 19 41597814 41597814 G A CYP2A13 Splice_Site p.X277_splice 0.09 TCGA-2H-A9GR-01 19 4175147 4175147 T A SIRT6 Missense_Mutation p.N206Y 0.26 deleterious(0.04) benign(0.408) TCGA-2H-A9GR-01 19 44056236 44056236 G A XRCC1 Nonsense_Mutation p.R339* 0.22 TCGA-2H-A9GR-01 19 44302744 44302744 G A LYPD5 Missense_Mutation p.P127L 0.13 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 19 4511303 4511303 A G PLIN4 Missense_Mutation p.V876A 0.23 tolerated(0.16) possibly_damaging(0.762) TCGA-2H-A9GR-01 19 52219540 52219540 T C HAS1 Missense_Mutation p.N344D 0.16 deleterious(0.01) probably_damaging(0.923) TCGA-2H-A9GR-01 19 5265039 5265039 C T PTPRS Missense_Mutation p.R183H 0.08 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 19 52716315 52716315 A C PPP2R1A Missense_Mutation p.E253D 0.24 tolerated(0.18) benign(0.001) TCGA-2H-A9GR-01 19 55790856 55790856 G A HSPBP1 Missense_Mutation p.P41S 0.12 tolerated(0.39) benign(0.146) TCGA-2H-A9GR-01 19 56952705 56952705 T G ZNF667 Missense_Mutation p.K553N 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-2H-A9GR-01 19 57324390 57324390 A T PEG3 3'UTR 0.41 TCGA-2H-A9GR-01 19 57325574 57325574 T C PEG3 Silent p.E1412E 0.18 TCGA-2H-A9GR-01 19 57327776 57327776 A C PEG3 Silent p.T678T 0.36 TCGA-2H-A9GR-01 19 57641680 57641680 A C USP29 Missense_Mutation p.K546T 0.26 deleterious(0.01) probably_damaging(0.951) TCGA-2H-A9GR-01 19 58446594 58446594 G A ZNF418 5'UTR 0.08 TCGA-2H-A9GR-01 19 6712611 6712611 G A C3 Missense_Mutation p.R343C 0.22 tolerated(0.06) possibly_damaging(0.772) TCGA-2H-A9GR-01 19 747464 747464 G A PALM 3'UTR 0.37 TCGA-2H-A9GR-01 19 7795643 7795643 C T CLEC4G Missense_Mutation p.R129H 0.28 tolerated(0.11) benign(0.006) TCGA-2H-A9GR-01 19 8467047 8467047 G A RAB11B Nonsense_Mutation p.W105* 0.18 TCGA-2H-A9GR-01 19 9068270 9068270 A G MUC16 Silent p.T6392T 0.36 TCGA-2H-A9GR-01 19 9324982 9324982 A C OR7D4 Missense_Mutation p.F178V 0.31 deleterious(0.02) possibly_damaging(0.536) TCGA-2H-A9GR-01 1 102302454 102302454 A C OLFM3 Missense_Mutation p.L66R 0.11 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 1 109391542 109391542 T C AKNAD1 Missense_Mutation p.K392E 0.19 tolerated(0.06) possibly_damaging(0.677) TCGA-2H-A9GR-01 1 109486176 109486176 C T CLCC1 Missense_Mutation p.R208H 0.36 tolerated(0.69) benign(0.104) TCGA-2H-A9GR-01 1 11177065 11177065 C T MTOR Missense_Mutation p.D2338N 0.37 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GR-01 1 11596444 11596444 G A PTCHD2 Missense_Mutation p.V1294I 0.15 tolerated(0.15) benign(0.391) TCGA-2H-A9GR-01 1 12009874 12009874 G A PLOD1 Silent p.S71S 0.14 TCGA-2H-A9GR-01 1 12918909 12918909 G A PRAMEF2 Silent p.Q15Q 0.27 TCGA-2H-A9GR-01 1 142713417 142713417 T G RP11-417J8.6 RNA 0.28 TCGA-2H-A9GR-01 1 152280795 152280795 T G FLG Silent p.A2189A 0.30 TCGA-2H-A9GR-01 1 152551969 152551969 A C LCE3D 3'UTR 0.26 TCGA-2H-A9GR-01 1 152883590 152883590 A C IVL Missense_Mutation p.Q439H 0.25 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GR-01 1 152976284 152976284 A T SPRR3 3'UTR 0.11 TCGA-2H-A9GR-01 1 15627918 15627918 T C FHAD1 5'Flank 0.20 TCGA-2H-A9GR-01 1 157667003 157667003 A G FCRL3 Silent p.S257S 0.30 TCGA-2H-A9GR-01 1 158576613 158576613 C A OR10Z1 Missense_Mutation p.P129T 0.09 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GR-01 1 159176207 159176207 T G DARC Silent p.S328S 0.29 TCGA-2H-A9GR-01 1 159505541 159505541 A C OR10J5 Missense_Mutation p.I86S 0.35 deleterious(0) benign(0.097) TCGA-2H-A9GR-01 1 166974517 166974517 T G MAEL Missense_Mutation p.L243R 0.40 tolerated(0.17) benign(0.05) TCGA-2H-A9GR-01 1 176564118 176564118 T G PAPPA2 Missense_Mutation p.F460V 0.24 deleterious(0) probably_damaging(0.928) TCGA-2H-A9GR-01 1 183896607 183896607 G T RGL1 3'UTR 0.15 TCGA-2H-A9GR-01 1 185069716 185069716 C G RNF2 3'UTR 0.19 TCGA-2H-A9GR-01 1 196451484 196451484 T G KCNT2 Missense_Mutation p.S101R 0.37 tolerated(0.16) probably_damaging(0.981) TCGA-2H-A9GR-01 1 196965228 196965228 T C CFHR5 Silent p.H289H 0.39 TCGA-2H-A9GR-01 1 204425171 204425171 C T PIK3C2B Missense_Mutation p.V586M 0.15 tolerated(0.25) benign(0.028) TCGA-2H-A9GR-01 1 204955041 204955041 T G NFASC Intron 0.27 TCGA-2H-A9GR-01 1 204985730 204985730 A C NFASC 3'UTR 0.33 TCGA-2H-A9GR-01 1 204987647 204987647 A G NFASC 3'UTR 0.23 TCGA-2H-A9GR-01 1 207039974 207039974 G A IL20 Missense_Mutation p.R124Q 0.12 tolerated(0.24) benign(0.131) TCGA-2H-A9GR-01 1 215409122 215409122 G T KCNK2 3'UTR 0.21 TCGA-2H-A9GR-01 1 220754431 220754431 A C MARK1 Missense_Mutation p.T94P 0.22 deleterious(0) possibly_damaging(0.782) TCGA-2H-A9GR-01 1 228482614 228482614 G C OBSCN Silent p.G4272G 0.11 TCGA-2H-A9GR-01 1 236390006 236390006 A C ERO1LB Missense_Mutation p.L249R 0.19 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 1 237604648 237604648 A G RYR2 Silent p.E345E 0.43 TCGA-2H-A9GR-01 1 240458167 240458167 A G FMN2 Missense_Mutation p.Q1400R 0.16 probably_damaging(0.927) TCGA-2H-A9GR-01 1 241761155 241761155 T C OPN3 Missense_Mutation p.N280D 0.17 tolerated(0.48) benign(0.281) TCGA-2H-A9GR-01 1 247486494 247486494 G A ZNF496 Missense_Mutation p.R205W 0.23 deleterious(0.03) probably_damaging(0.924) TCGA-2H-A9GR-01 1 248457939 248457939 A G OR2T12 Silent p.N314N 0.14 TCGA-2H-A9GR-01 1 27100324 27100324 C T ARID1A Nonsense_Mutation p.Q1346* 0.19 TCGA-2H-A9GR-01 1 29018137 29018137 T G GMEB1 Silent p.A94A 0.31 TCGA-2H-A9GR-01 1 34042990 34042990 G A CSMD2 Silent p.N2496N 0.10 TCGA-2H-A9GR-01 1 3784594 3784594 C T DFFB Missense_Mutation p.R163W 0.15 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GR-01 1 40782877 40782877 G A COL9A2 5'UTR 0.15 TCGA-2H-A9GR-01 1 41283924 41283924 G A KCNQ4 Missense_Mutation p.G165D 0.20 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 1 50572048 50572048 A C ELAVL4 Silent p.R15R 0.16 TCGA-2H-A9GR-01 1 67793957 67793957 T A IL12RB2 Missense_Mutation p.I185N 0.15 deleterious(0.01) probably_damaging(0.968) TCGA-2H-A9GR-01 1 71869368 71869368 T A NEGR1 3'UTR 0.37 TCGA-2H-A9GR-01 1 7811262 7811262 G A CAMTA1 Missense_Mutation p.A1565T 0.23 deleterious(0) probably_damaging(0.995) TCGA-2H-A9GR-01 1 82416109 82416109 T C LPHN2 Missense_Mutation p.W479R 0.10 deleterious(0.03) benign(0.261) TCGA-2H-A9GR-01 20 1961103 1961103 A C PDYN Missense_Mutation p.L211V 0.31 deleterious(0.01) possibly_damaging(0.878) TCGA-2H-A9GR-01 20 20484080 20484080 G A RALGAPA2 Missense_Mutation p.P1708L 0.24 deleterious(0) probably_damaging(0.986) TCGA-2H-A9GR-01 20 3128913 3128913 A T FASTKD5 Nonsense_Mutation p.Y268* 0.39 TCGA-2H-A9GR-01 20 39316865 39316865 T C MAFB Missense_Mutation p.D209G 0.21 tolerated(0.08) probably_damaging(0.992) TCGA-2H-A9GR-01 20 40944511 40944511 A C PTPRT Missense_Mutation p.F664C 0.29 deleterious(0) benign(0.43) TCGA-2H-A9GR-01 20 40944563 40944563 A G PTPRT Missense_Mutation p.S647P 0.28 tolerated(1) benign(0.003) TCGA-2H-A9GR-01 20 44978738 44978738 G A SLC35C2 3'UTR 0.20 TCGA-2H-A9GR-01 20 46267885 46267885 A G NCOA3 Silent p.Q882Q 0.05 TCGA-2H-A9GR-01 20 57251994 57251994 C T STX16 3'UTR 0.06 TCGA-2H-A9GR-01 20 57767078 57767078 G A ZNF831 Missense_Mutation p.R335Q 0.19 tolerated(0.37) benign(0.067) TCGA-2H-A9GR-01 20 62326237 62326237 G T RTEL1 Missense_Mutation p.A1109S 0.42 tolerated(0.21) benign(0.089) TCGA-2H-A9GR-01 20 941070 941070 C T RSPO4 Missense_Mutation p.R212H 0.36 deleterious(0) probably_damaging(0.923) TCGA-2H-A9GR-01 21 14417502 14417502 T A RNU6-614P 5'Flank 0.09 TCGA-2H-A9GR-01 21 15399751 15399751 C T AP001347.6 RNA 0.19 TCGA-2H-A9GR-01 21 15872860 15872860 A C SAMSN1 Missense_Mutation p.I321S 0.19 deleterious(0) possibly_damaging(0.886) TCGA-2H-A9GR-01 21 26802219 26802219 T G LINC00158 RNA 0.29 TCGA-2H-A9GR-01 21 28214671 28214671 A G ADAMTS1 Missense_Mutation p.L355P 0.27 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 21 33372121 33372121 A C HUNK 3'UTR 0.13 TCGA-2H-A9GR-01 21 38139568 38139568 C T HLCS Silent p.P490P 0.11 TCGA-2H-A9GR-01 21 40551881 40551881 G T PSMG1 Missense_Mutation p.A142E 0.14 deleterious(0) probably_damaging(0.966) TCGA-2H-A9GR-01 21 43327823 43327823 C T C2CD2 Silent p.T363T 0.12 TCGA-2H-A9GR-01 21 45565332 45565332 G T C21orf33 3'UTR 0.15 TCGA-2H-A9GR-01 21 47412126 47412126 G A COL6A1 Missense_Mutation p.D411N 0.08 tolerated(0.12) unknown(0) TCGA-2H-A9GR-01 22 31330171 31330171 G A MORC2 Missense_Mutation p.P672L 0.33 tolerated_low_confidence(0.27) benign(0) TCGA-2H-A9GR-01 22 32795674 32795674 C A RTCB Missense_Mutation p.K190N 0.16 tolerated(0.35) probably_damaging(0.925) TCGA-2H-A9GR-01 22 37458751 37458751 C T KCTD17 3'UTR 0.38 TCGA-2H-A9GR-01 2 100016281 100016281 C T EIF5B 3'UTR 0.19 TCGA-2H-A9GR-01 2 102460651 102460651 C T MAP4K4 Missense_Mutation p.R371W 0.32 deleterious_low_confidence(0) unknown(0) TCGA-2H-A9GR-01 2 105859576 105859576 G A GPR45 3'UTR 0.25 TCGA-2H-A9GR-01 2 116601842 116601842 T G DPP10 3'Flank 0.27 TCGA-2H-A9GR-01 2 120704130 120704130 C T PTPN4 Nonsense_Mutation p.R546* 0.35 TCGA-2H-A9GR-01 2 141004675 141004675 T C LRP1B Missense_Mutation p.K4435R 0.40 benign(0.292) TCGA-2H-A9GR-01 2 141031998 141031998 A C LRP1B Missense_Mutation p.F4379L 0.32 benign(0) TCGA-2H-A9GR-01 2 141459350 141459350 T A LRP1B Nonsense_Mutation p.R2123* 0.33 TCGA-2H-A9GR-01 2 141812823 141812823 T G LRP1B Missense_Mutation p.S472R 0.41 possibly_damaging(0.485) TCGA-2H-A9GR-01 2 151325050 151325050 G A RND3 3'UTR 0.10 TCGA-2H-A9GR-01 2 160663488 160663488 A T LY75-CD302 Silent p.P1662P 0.13 TCGA-2H-A9GR-01 2 161051888 161051888 G T ITGB6 Missense_Mutation p.N195K 0.14 deleterious(0) possibly_damaging(0.907) TCGA-2H-A9GR-01 2 162267813 162267813 G A PSMD14 Missense_Mutation p.D279N 0.08 tolerated(0.15) possibly_damaging(0.651) TCGA-2H-A9GR-01 2 164467533 164467533 G A FIGN Missense_Mutation p.P270L 0.08 tolerated(0.14) probably_damaging(0.913) TCGA-2H-A9GR-01 2 167159806 167159806 T G SCN9A Missense_Mutation p.K232T 0.14 deleterious(0) probably_damaging(0.995) TCGA-2H-A9GR-01 2 168115371 168115371 C G XIRP2 3'UTR 0.13 TCGA-2H-A9GR-01 2 170753079 170753079 T A UBR3 Missense_Mutation p.S433R 0.11 deleterious(0) probably_damaging(0.985) TCGA-2H-A9GR-01 2 175711878 175711878 A G CHN1 Intron 0.09 TCGA-2H-A9GR-01 2 178977213 178977213 A T RBM45 5'UTR 0.12 TCGA-2H-A9GR-01 2 179506042 179506042 A C TTN Missense_Mutation p.V13520G 0.26 TCGA-2H-A9GR-01 2 179528404 179528404 T C TTN Missense_Mutation p.K12161R 0.25 TCGA-2H-A9GR-01 2 179614100 179614100 T C TTN Intron 0.10 TCGA-2H-A9GR-01 2 1926975 1926975 T G MYT1L Missense_Mutation p.N189T 0.14 tolerated(0.15) probably_damaging(0.997) TCGA-2H-A9GR-01 2 200136460 200136460 G T SATB2 3'UTR 0.28 TCGA-2H-A9GR-01 2 200213845 200213845 C T SATB2 Missense_Mutation p.R251H 0.06 tolerated(0.09) benign(0.03) TCGA-2H-A9GR-01 2 209190314 209190314 A G PIKFYVE Missense_Mutation p.S927G 0.14 tolerated_low_confidence(0.35) benign(0) TCGA-2H-A9GR-01 2 210808234 210808234 T C UNC80 Missense_Mutation p.F2283S 0.50 possibly_damaging(0.744) TCGA-2H-A9GR-01 2 212242740 212242740 G C ERBB4 3'UTR 0.09 TCGA-2H-A9GR-01 2 212243483 212243483 G T ERBB4 3'UTR 0.14 TCGA-2H-A9GR-01 2 218712300 218712300 T C TNS1 Silent p.S855S 0.25 TCGA-2H-A9GR-01 2 223158747 223158747 G A PAX3 Intron 0.17 TCGA-2H-A9GR-01 2 223919105 223919105 G A KCNE4 3'UTR 0.09 TCGA-2H-A9GR-01 2 230664051 230664051 T C TRIP12 Silent p.P1010P 0.15 TCGA-2H-A9GR-01 2 230900844 230900844 A C SLC16A14 3'UTR 0.14 TCGA-2H-A9GR-01 2 233410318 233410318 G A CHRNG Silent p.S482S 0.12 TCGA-2H-A9GR-01 2 234622057 234622057 C T UGT1A5 Silent p.H140H 0.12 TCGA-2H-A9GR-01 2 238277275 238277275 T C COL6A3 Missense_Mutation p.N1611D 0.23 benign(0.191) TCGA-2H-A9GR-01 2 26683806 26683806 G A OTOF Missense_Mutation p.P1876S 0.25 tolerated(0.14) possibly_damaging(0.839) TCGA-2H-A9GR-01 2 40657254 40657254 T G SLC8A1 Missense_Mutation p.K56T 0.31 tolerated(0.29) benign(0.032) TCGA-2H-A9GR-01 2 55155514 55155514 T C EML6 Missense_Mutation p.L1247P 0.10 deleterious(0.04) benign(0.239) TCGA-2H-A9GR-01 2 56420200 56420200 A G CCDC85A Missense_Mutation p.S289G 0.18 tolerated_low_confidence(0.15) benign(0.006) TCGA-2H-A9GR-01 2 5833994 5833994 C T SOX11 Silent p.L381L 0.21 TCGA-2H-A9GR-01 2 5839322 5839322 T G SOX11 3'UTR 0.35 TCGA-2H-A9GR-01 2 60686343 60686343 A C BCL11A 3'UTR 0.29 TCGA-2H-A9GR-01 2 65540839 65540839 A T SPRED2 Nonsense_Mutation p.Y351* 0.13 TCGA-2H-A9GR-01 2 66691293 66691293 C A MEIS1 Missense_Mutation p.T228N 0.19 deleterious(0.03) probably_damaging(0.951) TCGA-2H-A9GR-01 2 72359392 72359392 C T CYP26B1 Silent p.L501L 0.13 TCGA-2H-A9GR-01 2 73836724 73836724 A C ALMS1 Missense_Mutation p.K4163N 0.24 probably_damaging(0.999) TCGA-2H-A9GR-01 2 74058030 74058030 G A STAMBP Missense_Mutation p.R16K 0.28 tolerated(0.08) probably_damaging(0.96) TCGA-2H-A9GR-01 2 97652055 97652055 C T FAM178B 5'UTR 0.09 TCGA-2H-A9GR-01 2 99636828 99636828 C G TSGA10 Missense_Mutation p.E578Q 0.24 deleterious(0.02) probably_damaging(0.993) TCGA-2H-A9GR-01 3 130103862 130103862 A C COL6A5 Silent p.R506R 0.38 TCGA-2H-A9GR-01 3 1367550 1367550 A T CNTN6 Missense_Mutation p.D333V 0.09 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 3 147104282 147104282 A C ZIC4 3'UTR 0.17 TCGA-2H-A9GR-01 3 151160934 151160934 A C IGSF10 Missense_Mutation p.M1934R 0.16 deleterious(0) benign(0.266) TCGA-2H-A9GR-01 3 154898690 154898690 T G MME 3'UTR 0.31 TCGA-2H-A9GR-01 3 16237303 16237303 A C GALNT15 Silent p.T192T 0.37 TCGA-2H-A9GR-01 3 165547720 165547720 C A BCHE Missense_Mutation p.D368Y 0.28 deleterious(0) probably_damaging(0.976) TCGA-2H-A9GR-01 3 165548322 165548322 A C BCHE Missense_Mutation p.V167G 0.15 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 3 173996816 173996816 T G NLGN1 Missense_Mutation p.L342R 0.23 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 3 195509080 195509080 G C MUC4 Missense_Mutation p.T3124S 0.29 probably_damaging(0.945) TCGA-2H-A9GR-01 3 196730925 196730925 C A MFI2 Missense_Mutation p.D662Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 3 42740347 42740347 G T HHATL Silent p.G112G 0.21 TCGA-2H-A9GR-01 3 47894246 47894246 C T MAP4 3'UTR 0.21 TCGA-2H-A9GR-01 3 50816175 50816175 T C DOCK3 Missense_Mutation p.L36P 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-2H-A9GR-01 3 5221447 5221447 T G ARL8B 3'UTR 0.32 TCGA-2H-A9GR-01 3 54930780 54930780 T G CACNA2D3 Missense_Mutation p.F751V 0.19 deleterious(0) benign(0.214) TCGA-2H-A9GR-01 3 64005037 64005037 G A PSMD6 Silent p.L144L 0.12 TCGA-2H-A9GR-01 3 77626728 77626728 C G ROBO2 Missense_Mutation p.P780R 0.15 deleterious(0.01) probably_damaging(0.942) TCGA-2H-A9GR-01 3 78646864 78646864 T A ROBO1 3'UTR 0.10 TCGA-2H-A9GR-01 3 78685023 78685023 G A ROBO1 Silent p.S1091S 0.28 TCGA-2H-A9GR-01 3 81586214 81586214 A C GBE1 Missense_Mutation p.F551V 0.10 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 3 88039930 88039930 T G HTR1F Missense_Mutation p.L11V 0.21 tolerated(0.53) benign(0.003) TCGA-2H-A9GR-01 3 89448604 89448604 A G EPHA3 Missense_Mutation p.K523R 0.15 tolerated(0.39) benign(0.118) TCGA-2H-A9GR-01 4 108935634 108935634 C A HADH Missense_Mutation p.S103R 0.23 tolerated(0.06) benign(0.044) TCGA-2H-A9GR-01 4 110904673 110904673 C A EGF Missense_Mutation p.L823I 0.09 deleterious(0.03) possibly_damaging(0.844) TCGA-2H-A9GR-01 4 11401402 11401402 C T HS3ST1 Silent p.L76L 0.21 TCGA-2H-A9GR-01 4 118005055 118005055 T G TRAM1L1 3'UTR 0.16 TCGA-2H-A9GR-01 4 119229606 119229606 C T PRSS12 Missense_Mutation p.R539H 0.11 deleterious(0) probably_damaging(0.998) TCGA-2H-A9GR-01 4 147562402 147562402 T G POU4F2 3'UTR 0.13 TCGA-2H-A9GR-01 4 155254028 155254028 A C DCHS2 Missense_Mutation p.L612R 0.29 tolerated(0.31) benign(0.019) TCGA-2H-A9GR-01 4 155487151 155487151 G A FGB Silent p.L102L 0.15 TCGA-2H-A9GR-01 4 165891144 165891144 A T TRIM61 Missense_Mutation p.V4D 0.12 tolerated(0.19) benign(0.124) TCGA-2H-A9GR-01 4 21305474 21305474 A C KCNIP4 Intron 0.12 TCGA-2H-A9GR-01 4 3589772 3589772 T C LINC00955 Missense_Mutation p.L47P 0.13 tolerated_low_confidence(0.1) possibly_damaging(0.887) TCGA-2H-A9GR-01 4 4421742 4421742 T C STX18 3'UTR 0.10 TCGA-2H-A9GR-01 4 55595599 55595599 C G KIT Missense_Mutation p.H697D 0.20 tolerated(0.59) benign(0.102) TCGA-2H-A9GR-01 4 57839424 57839424 C T NOA1 Missense_Mutation p.D469N 0.07 tolerated(0.08) benign(0.432) TCGA-2H-A9GR-01 4 5837646 5837646 T C CRMP1 Missense_Mutation p.K540R 0.13 deleterious(0.05) benign(0.02) TCGA-2H-A9GR-01 4 87693997 87693997 T G PTPN13 Silent p.A1750A 0.28 TCGA-2H-A9GR-01 4 90857433 90857433 A C MMRN1 Missense_Mutation p.K868Q 0.23 tolerated(0.05) possibly_damaging(0.801) TCGA-2H-A9GR-01 4 91234154 91234154 A G CCSER1 Missense_Mutation p.R489G 0.36 deleterious(0.03) probably_damaging(0.997) TCGA-2H-A9GR-01 4 95200104 95200104 T C SMARCAD1 Missense_Mutation p.V776A 0.12 tolerated(0.17) benign(0.098) TCGA-2H-A9GR-01 5 101816047 101816047 A C SLCO6A1 Missense_Mutation p.S150R 0.15 deleterious(0) probably_damaging(0.98) TCGA-2H-A9GR-01 5 129520837 129520837 A G CHSY3 Missense_Mutation p.S668G 0.33 tolerated(0.4) benign(0.063) TCGA-2H-A9GR-01 5 134910319 134910319 T C CXCL14 Missense_Mutation p.K88R 0.14 tolerated(0.11) possibly_damaging(0.874) TCGA-2H-A9GR-01 5 140555303 140555303 A C PCDHB7 3'UTR 0.19 TCGA-2H-A9GR-01 5 143853371 143853371 G A KCTD16 Silent p.T327T 0.22 TCGA-2H-A9GR-01 5 145610441 145610441 C T RBM27 Nonsense_Mutation p.R271* 0.26 TCGA-2H-A9GR-01 5 147021269 147021269 A G JAKMIP2 Splice_Site p.X427_splice 0.09 TCGA-2H-A9GR-01 5 170722912 170722912 A C RANBP17 Missense_Mutation p.S1022R 0.25 tolerated(0.35) benign(0.08) TCGA-2H-A9GR-01 5 178554969 178554969 A G ADAMTS2 Missense_Mutation p.C870R 0.14 deleterious(0) probably_damaging(0.967) TCGA-2H-A9GR-01 5 22143063 22143063 A C CDH12 Intron 0.13 TCGA-2H-A9GR-01 5 2751738 2751738 G A IRX2 5'UTR 0.33 TCGA-2H-A9GR-01 5 35800171 35800171 A G SPEF2 Silent p.G1644G 0.51 TCGA-2H-A9GR-01 5 5319324 5319324 C T ADAMTS16 3'UTR 0.42 TCGA-2H-A9GR-01 5 54403673 54403673 G T GZMA Missense_Mutation p.E89D 0.17 tolerated(0.05) possibly_damaging(0.685) TCGA-2H-A9GR-01 5 5464761 5464761 A G KIAA0947 Missense_Mutation p.N1772D 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-2H-A9GR-01 5 54696074 54696074 G A SKIV2L2 Missense_Mutation p.R769H 0.05 deleterious(0) probably_damaging(0.991) TCGA-2H-A9GR-01 5 78746889 78746889 T G HOMER1 Missense_Mutation p.K73T 0.25 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 5 80553652 80553652 C T CKMT2 Nonsense_Mutation p.R286* 0.12 TCGA-2H-A9GR-01 5 82837805 82837805 A T VCAN Missense_Mutation p.S2995C 0.31 deleterious(0.02) possibly_damaging(0.827) TCGA-2H-A9GR-01 5 9190519 9190519 T G SEMA5A Missense_Mutation p.K378T 0.20 deleterious(0) possibly_damaging(0.84) TCGA-2H-A9GR-01 6 100390836 100390836 G A MCHR2 Silent p.D192D 0.12 TCGA-2H-A9GR-01 6 100838294 100838294 T G SIM1 Missense_Mutation p.Q748H 0.36 deleterious_low_confidence(0.02) possibly_damaging(0.556) TCGA-2H-A9GR-01 6 117237390 117237390 G T RFX6 Missense_Mutation p.W295C 0.15 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 6 134312398 134312400 TTC - SLC2A12 In_Frame_Del p.E583del 0.41 TCGA-2H-A9GR-01 6 144508927 144508927 T C STX11 3'UTR 0.11 TCGA-2H-A9GR-01 6 152542686 152542686 T G SYNE1 Missense_Mutation p.Q7177H 0.41 benign(0.046) TCGA-2H-A9GR-01 6 160963809 160963809 T C LPA Silent p.Q1810Q 0.12 TCGA-2H-A9GR-01 6 162683700 162683700 T G PARK2 Missense_Mutation p.N90T 0.23 tolerated(0.52) benign(0.001) TCGA-2H-A9GR-01 6 170873672 170873672 C A TBP Missense_Mutation p.D179E 0.44 deleterious(0.02) benign(0.055) TCGA-2H-A9GR-01 6 27279045 27279045 A T POM121L2 Missense_Mutation p.V302E 0.39 tolerated(0.29) benign(0.011) TCGA-2H-A9GR-01 6 31628132 31628132 G A C6orf47 5'UTR 0.26 TCGA-2H-A9GR-01 6 350907 350907 T G DUSP22 3'UTR 0.17 TCGA-2H-A9GR-01 6 41908691 41908691 C G CCND3 Intron 0.20 TCGA-2H-A9GR-01 6 54214543 54214543 T C TINAG Missense_Mutation p.F310S 0.23 tolerated(0.65) benign(0.068) TCGA-2H-A9GR-01 6 64289213 64289213 A C PTP4A1 Missense_Mutation p.E127D 0.11 tolerated(0.07) benign(0.007) TCGA-2H-A9GR-01 6 65301485 65301485 A C EYS Silent p.T1425T 0.13 TCGA-2H-A9GR-01 6 69347419 69347419 A C BAI3 5'UTR 0.31 TCGA-2H-A9GR-01 6 69728321 69728321 A C BAI3 Missense_Mutation p.E679D 0.24 deleterious(0) possibly_damaging(0.492) TCGA-2H-A9GR-01 6 70423564 70423564 T G LMBRD1 Missense_Mutation p.K296N 0.16 deleterious(0) probably_damaging(0.983) TCGA-2H-A9GR-01 6 73108705 73108705 A G RIMS1 Missense_Mutation p.K1590R 0.11 deleterious(0) possibly_damaging(0.823) TCGA-2H-A9GR-01 6 75841699 75841699 C T COL12A1 Missense_Mutation p.R1965H 0.28 probably_damaging(0.97) TCGA-2H-A9GR-01 6 76023058 76023058 T G FILIP1 Missense_Mutation p.E830D 0.15 tolerated(0.07) probably_damaging(0.996) TCGA-2H-A9GR-01 6 88854922 88854922 G A CNR1 Silent p.G24G 0.09 TCGA-2H-A9GR-01 6 91246095 91246095 G A MAP3K7 Silent p.S439S 0.07 TCGA-2H-A9GR-01 6 97533159 97533159 T G KLHL32 Missense_Mutation p.L190R 0.31 deleterious(0) probably_damaging(0.919) TCGA-2H-A9GR-01 7 100183598 100183598 C T LRCH4 Silent p.V42V 0.11 TCGA-2H-A9GR-01 7 102604101 102604101 G T FBXL13 Silent p.S201S 0.16 TCGA-2H-A9GR-01 7 107696447 107696447 C A LAMB4 Missense_Mutation p.D1129Y 0.19 deleterious(0) probably_damaging(0.937) TCGA-2H-A9GR-01 7 110764718 110764718 G T LRRN3 Missense_Mutation p.M630I 0.18 tolerated(0.63) benign(0) TCGA-2H-A9GR-01 7 111644111 111644111 T G DOCK4 Missense_Mutation p.K38T 0.35 tolerated(0.21) probably_damaging(0.986) TCGA-2H-A9GR-01 7 124386619 124386619 C T GPR37 Missense_Mutation p.R601H 0.10 deleterious(0) benign(0.363) TCGA-2H-A9GR-01 7 128493010 128493010 C T FLNC Missense_Mutation p.R2045W 0.19 deleterious(0) probably_damaging(0.975) TCGA-2H-A9GR-01 7 132174198 132174198 G T PLXNA4 Missense_Mutation p.D408E 0.15 tolerated(0.31) probably_damaging(0.936) TCGA-2H-A9GR-01 7 136700565 136700565 A G CHRM2 Missense_Mutation p.E318G 0.33 tolerated(0.33) benign(0.004) TCGA-2H-A9GR-01 7 136701407 136701407 G A CHRM2 3'UTR 0.33 TCGA-2H-A9GR-01 7 136849088 136849088 T C hsa-mir-490 Intron 0.26 TCGA-2H-A9GR-01 7 137237262 137237262 A C DGKI Missense_Mutation p.V667G 0.26 deleterious(0) possibly_damaging(0.902) TCGA-2H-A9GR-01 7 13933389 13933389 T A ETV1 3'UTR 0.25 TCGA-2H-A9GR-01 7 142567600 142567600 C A EPHB6 Missense_Mutation p.P830T 0.19 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 7 152549293 152549293 C T ACTR3B Missense_Mutation p.A345V 0.08 tolerated(0.18) benign(0.038) TCGA-2H-A9GR-01 7 156803027 156803027 A G MNX1 Silent p.N6N 0.13 TCGA-2H-A9GR-01 7 157046813 157046813 A G UBE3C Missense_Mutation p.M954V 0.09 deleterious(0) benign(0.261) TCGA-2H-A9GR-01 7 19184940 19184940 A C FERD3L Missense_Mutation p.F16V 0.06 deleterious(0) possibly_damaging(0.713) TCGA-2H-A9GR-01 7 19184962 19184962 G A FERD3L Silent p.C8C 0.07 TCGA-2H-A9GR-01 7 2485937 2485937 G A AC004840.9 RNA 0.19 TCGA-2H-A9GR-01 7 2703289 2703289 G A TTYH3 3'UTR 0.16 TCGA-2H-A9GR-01 7 31016045 31016045 C T GHRHR Missense_Mutation p.R326C 0.19 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GR-01 7 33313529 33313529 T G BBS9 Missense_Mutation p.L326R 0.48 deleterious(0) probably_damaging(0.994) TCGA-2H-A9GR-01 7 37251073 37251073 T C ELMO1 Missense_Mutation p.E335G 0.44 deleterious(0.01) possibly_damaging(0.889) TCGA-2H-A9GR-01 7 50121488 50121488 C T ZPBP Silent p.A72A 0.16 TCGA-2H-A9GR-01 7 5336639 5336639 C T SLC29A4 Missense_Mutation p.T231M 0.10 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GR-01 7 5410841 5410841 G A TNRC18 Silent p.P1128P 0.15 TCGA-2H-A9GR-01 7 56149352 56149352 G A PHKG1 Missense_Mutation p.R329W 0.10 tolerated(0.15) probably_damaging(1) TCGA-2H-A9GR-01 7 56550831 56550831 A G RP11-760D2.1 RNA 0.14 TCGA-2H-A9GR-01 7 63727240 63727240 G T ZNF679 Missense_Mutation p.C410F 0.21 deleterious(0.01) possibly_damaging(0.687) TCGA-2H-A9GR-01 7 65843727 65843727 A C LINC00174 RNA 0.42 TCGA-2H-A9GR-01 7 6639485 6639485 G A C7orf26 Silent p.L202L 0.06 TCGA-2H-A9GR-01 7 70800605 70800605 T C WBSCR17 Missense_Mutation p.L103P 0.22 deleterious(0) probably_damaging(0.993) TCGA-2H-A9GR-01 7 71175905 71175905 T G WBSCR17 Missense_Mutation p.F554V 0.39 deleterious(0) probably_damaging(0.982) TCGA-2H-A9GR-01 7 75508366 75508366 C A RHBDD2 5'UTR 0.55 TCGA-2H-A9GR-01 7 82581892 82581892 C A PCLO Nonsense_Mutation p.E2793* 0.43 TCGA-2H-A9GR-01 7 82585678 82585678 T G PCLO Missense_Mutation p.T1531P 0.22 unknown(0) TCGA-2H-A9GR-01 7 89859343 89859343 T C STEAP2 Missense_Mutation p.F393S 0.15 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 7 94285890 94285890 G A PEG10 Intron 0.13 TCGA-2H-A9GR-01 7 96653921 96653921 A C DLX5 Missense_Mutation p.F5L 0.20 tolerated(0.07) benign(0.425) TCGA-2H-A9GR-01 8 105263839 105263839 T C RIMS2 Missense_Mutation p.W1281R 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-2H-A9GR-01 8 107763096 107763096 C - OXR1 Frame_Shift_Del p.T851Sfs*26 0.31 TCGA-2H-A9GR-01 8 110394765 110394765 A G PKHD1L1 Missense_Mutation p.K128E 0.09 tolerated(0.48) benign(0.122) TCGA-2H-A9GR-01 8 113585825 113585825 C T CSMD3 Missense_Mutation p.R1316H 0.07 tolerated(0.23) probably_damaging(0.947) TCGA-2H-A9GR-01 8 124357205 124357205 T C ATAD2 Silent p.T879T 0.12 TCGA-2H-A9GR-01 8 125568580 125568580 G A MTSS1 Nonsense_Mutation p.R433* 0.07 TCGA-2H-A9GR-01 8 133584647 133584647 T G LRRC6 Missense_Mutation p.K436N 0.25 tolerated(0.13) benign(0.009) TCGA-2H-A9GR-01 8 133948049 133948049 C A TG Missense_Mutation p.R1661S 0.12 tolerated(1) benign(0.005) TCGA-2H-A9GR-01 8 133978821 133978821 T C TG Silent p.L1855L 0.12 TCGA-2H-A9GR-01 8 134042140 134042140 C T TG Nonsense_Mutation p.R2371* 0.14 TCGA-2H-A9GR-01 8 13947803 13947803 A T SGCZ 3'UTR 0.30 TCGA-2H-A9GR-01 8 143927913 143927913 A C GML Missense_Mutation p.K95T 0.15 tolerated(0.17) benign(0.255) TCGA-2H-A9GR-01 8 144994186 144994186 T C PLEC Missense_Mutation p.Q3405R 0.41 benign(0.008) TCGA-2H-A9GR-01 8 145745836 145745836 C T LRRC14 Missense_Mutation p.R182W 0.27 deleterious(0.05) probably_damaging(0.939) TCGA-2H-A9GR-01 8 1900950 1900950 G A ARHGEF10 Silent p.V1159V 0.06 TCGA-2H-A9GR-01 8 21608241 21608241 C T GFRA2 Missense_Mutation p.R218H 0.09 tolerated(0.09) probably_damaging(0.973) TCGA-2H-A9GR-01 8 27779320 27779320 G A SCARA5 Silent p.R228R 0.22 TCGA-2H-A9GR-01 8 39840171 39840171 G A IDO2 Missense_Mutation p.V119I 0.11 tolerated(0.22) benign(0.072) TCGA-2H-A9GR-01 8 51503460 51503460 T G SNTG1 Missense_Mutation p.F278V 0.13 tolerated(0.38) benign(0.041) TCGA-2H-A9GR-01 8 55540671 55540671 T G RP1 Missense_Mutation p.L1410R 0.09 tolerated(0.44) possibly_damaging(0.453) TCGA-2H-A9GR-01 8 70512986 70512986 A C SULF1 Silent p.R295R 0.27 TCGA-2H-A9GR-01 8 72964838 72964838 T C TRPA1 Missense_Mutation p.K603E 0.21 tolerated(0.71) benign(0.004) TCGA-2H-A9GR-01 8 89051050 89051050 T G MMP16 3'UTR 0.18 TCGA-2H-A9GR-01 9 100052889 100052889 C A CCDC180 5'UTR 0.29 TCGA-2H-A9GR-01 9 105767725 105767725 A C CYLC2 Missense_Mutation p.K271T 0.19 tolerated(0.1) unknown(0) TCGA-2H-A9GR-01 9 107456835 107456835 T G OR13D1 Missense_Mutation p.F45V 0.16 tolerated(0.8) benign(0.175) TCGA-2H-A9GR-01 9 116814422 116814422 G A ZNF618 3'UTR 0.13 TCGA-2H-A9GR-01 9 117848461 117848461 C T TNC Missense_Mutation p.V517I 0.20 tolerated(0.4) benign(0.009) TCGA-2H-A9GR-01 9 118997725 118997725 C T PAPPA Silent p.G847G 0.09 TCGA-2H-A9GR-01 9 120176829 120176829 G A ASTN2 Missense_Mutation p.R130C 0.18 deleterious_low_confidence(0) unknown(0) TCGA-2H-A9GR-01 9 125154752 125154752 G A PTGS1 Missense_Mutation p.V577I 0.15 tolerated(0.17) probably_damaging(0.998) TCGA-2H-A9GR-01 9 125273131 125273131 C T OR1J2 Silent p.L17L 0.21 TCGA-2H-A9GR-01 9 131898826 131898826 G A PPP2R4 Missense_Mutation p.D213N 0.22 deleterious(0) possibly_damaging(0.735) TCGA-2H-A9GR-01 9 139874722 139874722 T C PTGDS Missense_Mutation p.F179S 0.06 deleterious(0) probably_damaging(0.93) TCGA-2H-A9GR-01 9 14869114 14869114 A C FREM1 5'UTR 0.53 TCGA-2H-A9GR-01 9 16435643 16435643 A C BNC2 Missense_Mutation p.L850R 0.40 deleterious(0) probably_damaging(0.996) TCGA-2H-A9GR-01 9 20789347 20789347 C G FOCAD Intron 0.10 TCGA-2H-A9GR-01 9 39360840 39360840 A C SPATA31A1 Missense_Mutation p.Q1026H 0.21 deleterious(0.02) possibly_damaging(0.601) TCGA-2H-A9GR-01 9 730245 730245 T C KANK1 Missense_Mutation p.Y965H 0.06 tolerated(0.45) benign(0.003) TCGA-2H-A9GR-01 9 74586497 74586497 T C C9orf85 Missense_Mutation p.C96R 0.17 deleterious(0) probably_damaging(1) TCGA-2H-A9GR-01 9 8317165 8317165 A C PTPRD 3'UTR 0.41 TCGA-2H-A9GR-01 9 84547525 84547525 A G RP11-383M4.6 Intron 0.10 TCGA-2H-A9GR-01 X 101093213 101093213 T C NXF5 Silent p.G273G 0.60 TCGA-2H-A9GR-01 X 101382465 101382465 T G TCEAL2 Silent p.T221T 0.39 TCGA-2H-A9GR-01 X 111700442 111700442 T C ZCCHC16 3'UTR 0.47 TCGA-2H-A9GR-01 X 140984237 140984237 T A MAGEC3 Intron 0.62 TCGA-2H-A9GR-01 X 144905921 144905921 T G SLITRK2 Missense_Mutation p.L660V 0.76 tolerated(0.33) benign(0.003) TCGA-2H-A9GR-01 X 146271286 146271286 T G MIR513C RNA 0.54 TCGA-2H-A9GR-01 X 16887758 16887758 C T RBBP7 Missense_Mutation p.A3T 0.22 unknown(0) TCGA-2H-A9GR-01 X 35820811 35820811 T C MAGEB16 Silent p.F166F 0.53 TCGA-2H-A9GR-01 X 70147798 70147798 G A SLC7A3 Missense_Mutation p.A298V 0.22 tolerated(0.23) benign(0.129) TCGA-2H-A9GR-01 X 73040638 73040638 G C XIST RNA 0.06 TCGA-2H-A9GR-01 X 73963953 73963953 A C KIAA2022 Missense_Mutation p.L147V 0.71 deleterious(0) probably_damaging(0.999) TCGA-2H-A9GR-01 X 78012111 78012111 T G LPAR4 3'UTR 0.66 TCGA-2H-A9GR-01 X 80371811 80371811 T G HMGN5 Missense_Mutation p.E53D 0.28 tolerated(0.12) possibly_damaging(0.458) TCGA-2H-A9GR-01 X 90691807 90691807 C T PABPC5 3'UTR 0.09 TCGA-2H-A9GR-01 X 91874304 91874304 A C PCDH11X 3'UTR 0.67 TCGA-IC-A6RE-01 10 104814134 104814134 A G CNNM2 Missense_Mutation p.D605G 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-IC-A6RE-01 10 106960907 106960907 A C SORCS3 Missense_Mutation p.K719N 0.12 deleterious(0) benign(0.368) TCGA-IC-A6RE-01 10 118628208 118628208 A T ENO4 Missense_Mutation p.K71N 0.19 tolerated(0.07) possibly_damaging(0.607) TCGA-IC-A6RE-01 10 120933985 120933985 G A PRDX3 Missense_Mutation p.L97F 0.06 tolerated(0.31) probably_damaging(0.999) TCGA-IC-A6RE-01 10 121557109 121557109 C A INPP5F Missense_Mutation p.S335R 0.34 tolerated(0.07) benign(0.344) TCGA-IC-A6RE-01 10 122660587 122660587 A T WDR11 Missense_Mutation p.Q888H 0.27 deleterious(0.02) possibly_damaging(0.763) TCGA-IC-A6RE-01 10 123846540 123846540 T G TACC2 Missense_Mutation p.L1509V 0.20 benign(0.059) TCGA-IC-A6RE-01 10 124390531 124390531 G A DMBT1 Missense_Mutation p.R1898H 0.27 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 10 125767785 125767785 G C CHST15 3'UTR 0.25 TCGA-IC-A6RE-01 10 17171223 17171223 T G CUBN Missense_Mutation p.N50T 0.24 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RE-01 10 26462760 26462760 A - MYO3A Frame_Shift_Del p.M1192* 0.36 TCGA-IC-A6RE-01 10 26800761 26800761 A G APBB1IP Missense_Mutation p.N206S 0.26 tolerated(0.16) benign(0.444) TCGA-IC-A6RE-01 10 27538132 27538132 T G RP11-85G18.6 Intron 0.07 TCGA-IC-A6RE-01 10 32833185 32833185 C T CCDC7 Missense_Mutation p.P364S 0.07 tolerated(0.32) benign(0.001) TCGA-IC-A6RE-01 10 34601286 34601286 C T PARD3 Intron 0.12 TCGA-IC-A6RE-01 10 49935692 49935692 A T WDFY4 Missense_Mutation p.K320I 0.24 deleterious(0.01) probably_damaging(0.933) TCGA-IC-A6RE-01 10 55582821 55582821 T C PCDH15 Silent p.K1557K 0.37 TCGA-IC-A6RE-01 10 55955475 55955475 T G PCDH15 Silent p.R425R 0.37 TCGA-IC-A6RE-01 10 61830372 61830372 C T ANK3 Missense_Mutation p.E3423K 0.09 probably_damaging(0.956) TCGA-IC-A6RE-01 10 62630127 62630127 C T RHOBTB1 3'UTR 0.22 TCGA-IC-A6RE-01 10 6275709 6275709 T C PFKFB3 3'UTR 0.36 TCGA-IC-A6RE-01 10 64239791 64239791 T G ZNF365 Intron 0.43 TCGA-IC-A6RE-01 10 70446324 70446324 G C TET1 Missense_Mutation p.G1755A 0.19 tolerated(0.13) probably_damaging(0.917) TCGA-IC-A6RE-01 10 70446325 70446325 A G TET1 Silent p.G1755G 0.19 TCGA-IC-A6RE-01 10 70450805 70450805 C T TET1 Missense_Mutation p.T1882M 0.48 deleterious(0) probably_damaging(0.94) TCGA-IC-A6RE-01 10 72517717 72517717 G C ADAMTS14 Splice_Site p.X983_splice 0.11 TCGA-IC-A6RE-01 10 88717281 88717281 C T MMRN2 Silent p.L6L 0.19 TCGA-IC-A6RE-01 10 99225902 99225902 A T MMS19 Missense_Mutation p.L507Q 0.27 deleterious(0.01) benign(0.299) TCGA-IC-A6RE-01 10 99341131 99341131 T A ANKRD2 Missense_Mutation p.L232H 0.25 tolerated(0.08) probably_damaging(0.997) TCGA-IC-A6RE-01 11 103041643 103041643 T C DYNC2H1 Missense_Mutation p.I1727T 0.18 probably_damaging(1) TCGA-IC-A6RE-01 11 103044834 103044834 A C DYNC2H1 Missense_Mutation p.K1870T 0.20 probably_damaging(0.999) TCGA-IC-A6RE-01 11 103092848 103092848 T G DYNC2H1 Missense_Mutation p.L3066R 0.27 probably_damaging(0.988) TCGA-IC-A6RE-01 11 105782775 105782775 A T GRIA4 Intron 0.31 TCGA-IC-A6RE-01 11 105795332 105795332 T G GRIA4 Missense_Mutation p.L562V 0.22 deleterious(0) probably_damaging(0.975) TCGA-IC-A6RE-01 11 108170452 108170452 A C ATM Missense_Mutation p.S1673R 0.07 tolerated(0.37) benign(0.003) TCGA-IC-A6RE-01 11 110485314 110485314 A G ARHGAP20 Missense_Mutation p.F201L 0.10 tolerated(0.17) possibly_damaging(0.779) TCGA-IC-A6RE-01 11 118922539 118922539 G A HYOU1 Missense_Mutation p.P444S 0.38 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 11 119146741 119146741 C G CBL Missense_Mutation p.Q302E 0.08 deleterious(0.01) possibly_damaging(0.902) TCGA-IC-A6RE-01 11 124761567 124761567 C T ROBO4 Missense_Mutation p.R560H 0.10 tolerated(0.26) benign(0.011) TCGA-IC-A6RE-01 11 125482887 125482887 G T STT3A Missense_Mutation p.A457S 0.17 tolerated(0.47) benign(0.052) TCGA-IC-A6RE-01 11 1274134 1274134 C T MUC5B Silent p.V5047V 0.33 TCGA-IC-A6RE-01 11 134094912 134094912 G C VPS26B 5'UTR 0.43 TCGA-IC-A6RE-01 11 18637267 18637267 T A SPTY2D1 Missense_Mutation p.E185V 0.16 deleterious(0) benign(0.403) TCGA-IC-A6RE-01 11 20005691 20005691 T G NAV2 Missense_Mutation p.L912R 0.31 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RE-01 11 22400175 22400175 T C SLC17A6 3'UTR 0.11 TCGA-IC-A6RE-01 11 27018399 27018399 T G FIBIN 3'UTR 0.04 TCGA-IC-A6RE-01 11 30915886 30915886 T A DCDC1 Missense_Mutation p.K1601M 0.19 deleterious(0.03) possibly_damaging(0.891) TCGA-IC-A6RE-01 11 30915917 30915917 C A DCDC1 Missense_Mutation p.A1591S 0.16 tolerated(0.19) possibly_damaging(0.567) TCGA-IC-A6RE-01 11 3744539 3744539 T C NUP98 Missense_Mutation p.N665S 0.15 tolerated(0.72) benign(0.002) TCGA-IC-A6RE-01 11 4510950 4510950 G T OR52K1 Missense_Mutation p.V274F 0.30 tolerated(0.53) possibly_damaging(0.853) TCGA-IC-A6RE-01 11 45204671 45204671 G T PRDM11 Missense_Mutation p.W161C 0.44 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 11 46724278 46724278 G C ZNF408 Missense_Mutation p.D119H 0.13 deleterious(0.01) possibly_damaging(0.87) TCGA-IC-A6RE-01 11 47269238 47269238 C T ACP2 Missense_Mutation p.R84Q 0.13 deleterious(0.01) probably_damaging(0.983) TCGA-IC-A6RE-01 11 47364601 47364601 T C MYBPC3 Missense_Mutation p.E441G 0.21 deleterious(0) possibly_damaging(0.861) TCGA-IC-A6RE-01 11 49227684 49227684 A G FOLH1 Silent p.T53T 0.28 TCGA-IC-A6RE-01 11 5537370 5537370 T G UBQLNL Missense_Mutation p.K101T 0.32 deleterious(0) probably_damaging(0.939) TCGA-IC-A6RE-01 11 55418905 55418905 T A OR4S2 Missense_Mutation p.F176I 0.21 tolerated(0.06) probably_damaging(0.999) TCGA-IC-A6RE-01 11 55890329 55890329 G C OR8H3 Missense_Mutation p.V161L 0.11 tolerated(1) benign(0.004) TCGA-IC-A6RE-01 11 56128335 56128335 A C OR8J1 Missense_Mutation p.T205P 0.21 deleterious(0.01) possibly_damaging(0.877) TCGA-IC-A6RE-01 11 59224556 59224556 A G OR4D6 Silent p.G41G 0.09 TCGA-IC-A6RE-01 11 60183454 60183454 A C MS4A14 Missense_Mutation p.K371T 0.11 tolerated(0.51) benign(0.005) TCGA-IC-A6RE-01 11 60482559 60482559 C T MS4A8 Silent p.C200C 0.19 TCGA-IC-A6RE-01 11 61896307 61896307 G A INCENP Missense_Mutation p.R69K 0.20 tolerated(0.58) unknown(0) TCGA-IC-A6RE-01 11 6243800 6243800 C A FAM160A2 Nonsense_Mutation p.E355* 0.20 TCGA-IC-A6RE-01 11 65043451 65043451 C T POLA2 Missense_Mutation p.P148L 0.17 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RE-01 11 65123463 65123463 G A TIGD3 Missense_Mutation p.G62S 0.21 deleterious(0.03) possibly_damaging(0.806) TCGA-IC-A6RE-01 11 6642704 6642704 A T DCHS1 3'UTR 0.14 TCGA-IC-A6RE-01 11 74632295 74632295 A C XRRA1 Missense_Mutation p.L199R 0.33 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 11 85396707 85396707 T G CCDC89 Missense_Mutation p.K156T 0.19 tolerated(0.05) possibly_damaging(0.471) TCGA-IC-A6RE-01 11 92570848 92570848 T G FAT3 Missense_Mutation p.L3415R 0.13 benign(0.311) TCGA-IC-A6RE-01 11 94732185 94732185 A C KDM4D 3'UTR 0.19 TCGA-IC-A6RE-01 12 10010204 10010204 G T CLEC2B Missense_Mutation p.P36T 0.21 deleterious(0) probably_damaging(0.973) TCGA-IC-A6RE-01 12 106898014 106898014 T C POLR3B Missense_Mutation p.L1085P 0.27 deleterious(0) probably_damaging(0.971) TCGA-IC-A6RE-01 12 11214685 11214685 T G TAS2R46 Missense_Mutation p.E70A 0.33 tolerated(0.05) benign(0.004) TCGA-IC-A6RE-01 12 112672926 112672926 T C HECTD4 Missense_Mutation p.K1811R 0.11 possibly_damaging(0.84) TCGA-IC-A6RE-01 12 11286090 11286090 A T TAS2R30 Missense_Mutation p.F252I 0.24 tolerated(0.39) benign(0.283) TCGA-IC-A6RE-01 12 11461347 11461347 T G PRB4 Missense_Mutation p.E190D 0.21 tolerated_low_confidence(0.39) unknown(0) TCGA-IC-A6RE-01 12 114836398 114836398 G C TBX5 Missense_Mutation p.H164D 0.11 deleterious(0.05) probably_damaging(0.982) TCGA-IC-A6RE-01 12 118462695 118462695 T C RFC5 Missense_Mutation p.I154T 0.11 deleterious(0) probably_damaging(0.994) TCGA-IC-A6RE-01 12 121104685 121104685 C G CABP1 Silent p.V365V 0.33 TCGA-IC-A6RE-01 12 121222277 121222277 C A SPPL3 Missense_Mutation p.V104F 0.18 deleterious(0) benign(0.156) TCGA-IC-A6RE-01 12 124235717 124235717 G C ATP6V0A2 Missense_Mutation p.G666R 0.15 tolerated(0.16) probably_damaging(1) TCGA-IC-A6RE-01 12 130833811 130833811 T C PIWIL1 Silent p.T254T 0.36 TCGA-IC-A6RE-01 12 133151044 133151044 C T FBRSL1 Missense_Mutation p.A575V 0.18 tolerated(0.37) benign(0.066) TCGA-IC-A6RE-01 12 21007980 21007980 T A LST3 Missense_Mutation p.S35T 0.26 deleterious(0.04) benign(0.264) TCGA-IC-A6RE-01 12 23687309 23687309 A C SOX5 Silent p.T712T 0.32 TCGA-IC-A6RE-01 12 26384029 26384029 G A SSPN 3'UTR 0.34 TCGA-IC-A6RE-01 12 40925872 40925872 A G MUC19 Intron 0.20 TCGA-IC-A6RE-01 12 4736863 4736863 T G AKAP3 Missense_Mutation p.E402A 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-IC-A6RE-01 12 51138500 51138500 G A DIP2B Missense_Mutation p.V1537M 0.35 deleterious(0.01) probably_damaging(0.991) TCGA-IC-A6RE-01 12 52756165 52756165 C A KRT85 Missense_Mutation p.G390C 0.12 tolerated(0.05) possibly_damaging(0.552) TCGA-IC-A6RE-01 12 52777380 52777380 T A KRT84 Missense_Mutation p.K250M 0.14 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 12 53162830 53162830 C A KRT76 Silent p.G528G 0.10 TCGA-IC-A6RE-01 12 53202111 53202111 C T KRT4 Silent p.R364R 0.11 TCGA-IC-A6RE-01 12 54910699 54910699 C T NCKAP1L Missense_Mutation p.R340W 0.27 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RE-01 12 55357537 55357537 A G TESPA1 Missense_Mutation p.L215P 0.07 deleterious(0.03) probably_damaging(1) TCGA-IC-A6RE-01 12 55420233 55420233 A C NEUROD4 Missense_Mutation p.T4P 0.26 tolerated(0.49) benign(0) TCGA-IC-A6RE-01 12 57920760 57920760 T G MBD6 Missense_Mutation p.L611R 0.13 deleterious_low_confidence(0) unknown(0) TCGA-IC-A6RE-01 12 6058967 6058967 A G VWF Silent p.D2746D 0.30 TCGA-IC-A6RE-01 12 63544255 63544255 T G AVPR1A Missense_Mutation p.D121A 0.10 deleterious(0) probably_damaging(0.934) TCGA-IC-A6RE-01 12 6438227 6438227 A G TNFRSF1A 3'UTR 0.25 TCGA-IC-A6RE-01 12 73056836 73056836 A T TRHDE Missense_Mutation p.K979M 0.19 tolerated(0.05) probably_damaging(0.961) TCGA-IC-A6RE-01 12 73057074 73057074 T G TRHDE 3'UTR 0.29 TCGA-IC-A6RE-01 12 8072579 8072579 A C SLC2A3 3'UTR 0.42 TCGA-IC-A6RE-01 12 85267002 85267002 T G SLC6A15 Missense_Mutation p.K325Q 0.06 tolerated(0.12) probably_damaging(0.989) TCGA-IC-A6RE-01 12 85638763 85638763 T G LRRIQ1 3'UTR 0.33 TCGA-IC-A6RE-01 12 88590125 88590125 G A TMTC3 3'UTR 0.08 TCGA-IC-A6RE-01 12 91502123 91502123 A C LUM Missense_Mutation p.L212V 0.15 deleterious(0.04) possibly_damaging(0.685) TCGA-IC-A6RE-01 12 96367994 96367994 T G HAL 3'UTR 0.29 TCGA-IC-A6RE-01 12 977760 977760 T C WNK1 Intron 0.21 TCGA-IC-A6RE-01 13 107822313 107822323 TGTTGTTTTCT GTTGTTTTC FAM155A 3'UTR 0.09 TCGA-IC-A6RE-01 13 107822428 107822428 A G FAM155A 3'UTR 0.12 TCGA-IC-A6RE-01 13 112724270 112724270 C T SOX1 3'UTR 0.23 TCGA-IC-A6RE-01 13 19751618 19751618 A C TUBA3C Missense_Mutation p.F169V 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.852) TCGA-IC-A6RE-01 13 23939354 23939354 A C SACS Silent p.T136T 0.41 TCGA-IC-A6RE-01 13 25263409 25263409 G A ATP12A Missense_Mutation p.G148S 0.15 deleterious(0.03) benign(0.256) TCGA-IC-A6RE-01 13 25419157 25419157 T G RNF17 Missense_Mutation p.L1014R 0.20 deleterious(0) probably_damaging(0.995) TCGA-IC-A6RE-01 13 25822854 25822854 T C MTMR6 3'UTR 0.10 TCGA-IC-A6RE-01 13 28840936 28840936 A C PAN3 Missense_Mutation p.N499T 0.14 tolerated(0.37) benign(0.042) TCGA-IC-A6RE-01 13 33679421 33679421 C T STARD13 3'UTR 0.35 TCGA-IC-A6RE-01 13 37006178 37006178 C T CCNA1 5'Flank 0.21 TCGA-IC-A6RE-01 13 37270304 37270304 A T SERTM1 3'UTR 0.12 TCGA-IC-A6RE-01 13 41949637 41949637 C T NAA16 Missense_Mutation p.P832S 0.07 deleterious(0) probably_damaging(0.963) TCGA-IC-A6RE-01 13 52607353 52607353 A C UTP14C 3'UTR 0.27 TCGA-IC-A6RE-01 13 61986873 61986873 A C PCDH20 Missense_Mutation p.F453L 0.12 tolerated(1) benign(0.109) TCGA-IC-A6RE-01 13 99970286 99970286 C G UBAC2 Missense_Mutation p.S175C 0.38 deleterious(0) probably_damaging(0.94) TCGA-IC-A6RE-01 14 105722547 105722547 G C BRF1 Intron 0.16 TCGA-IC-A6RE-01 14 106391002 106391002 T C KIAA0125 3'Flank 0.07 TCGA-IC-A6RE-01 14 19571402 19571402 A G POTEG Missense_Mutation p.E394G 0.08 deleterious(0.03) benign(0.003) TCGA-IC-A6RE-01 14 23390008 23390008 C T PRMT5 3'UTR 0.26 TCGA-IC-A6RE-01 14 23885406 23885406 T G MYH7 Missense_Mutation p.K1587T 0.36 deleterious(0.02) probably_damaging(0.987) TCGA-IC-A6RE-01 14 29237018 29237018 A C FOXG1 Missense_Mutation p.K178T 0.33 deleterious(0.01) unknown(0) TCGA-IC-A6RE-01 14 30105588 30105588 T G PRKD1 Missense_Mutation p.Q366H 0.13 tolerated(0.13) benign(0.001) TCGA-IC-A6RE-01 14 44974872 44974872 A C FSCB Missense_Mutation p.L440R 0.24 deleterious(0.03) benign(0.354) TCGA-IC-A6RE-01 14 45628400 45628400 C T FANCM Nonsense_Mutation p.Q500* 0.21 TCGA-IC-A6RE-01 14 55510261 55510261 C G SOCS4 Missense_Mutation p.Q168E 0.40 tolerated(1) benign(0) TCGA-IC-A6RE-01 14 71413732 71413732 T G PCNX Missense_Mutation p.L85R 0.08 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 14 74206049 74206049 G A ELMSAN1 Silent p.F221F 0.11 TCGA-IC-A6RE-01 14 74371668 74371668 G A ZNF410 Silent p.R282R 0.29 TCGA-IC-A6RE-01 14 77950679 77950679 T G ISM2 Missense_Mutation p.N205T 0.06 deleterious(0) unknown(0) TCGA-IC-A6RE-01 14 88946419 88946419 C G PTPN21 Missense_Mutation p.E452D 0.15 tolerated(0.18) probably_damaging(0.992) TCGA-IC-A6RE-01 14 93704137 93704137 A T BTBD7 3'UTR 0.08 TCGA-IC-A6RE-01 14 96152775 96152775 C T TCL1B 5'UTR 0.14 TCGA-IC-A6RE-01 14 99640661 99640661 T A BCL11B Nonsense_Mutation p.K838* 0.38 TCGA-IC-A6RE-01 15 22945048 22945048 G T CYFIP1 Silent p.T373T 0.17 TCGA-IC-A6RE-01 15 23889690 23889690 T C MAGEL2 Missense_Mutation p.N464S 0.27 tolerated(0.54) benign(0.001) TCGA-IC-A6RE-01 15 25351694 25351694 A G SNORD116-29 RNA 0.20 TCGA-IC-A6RE-01 15 26812796 26812796 A T GABRB3 Missense_Mutation p.L256Q 0.16 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 15 27184685 27184685 G T GABRA5 Intron 0.30 TCGA-IC-A6RE-01 15 29415829 29415829 A G FAM189A1 Missense_Mutation p.C445R 0.23 tolerated(0.07) benign(0.042) TCGA-IC-A6RE-01 15 30065440 30065440 G C TJP1 Missense_Mutation p.L69V 0.17 deleterious(0) probably_damaging(0.986) TCGA-IC-A6RE-01 15 34110884 34110884 A G RYR3 Missense_Mutation p.S3569G 0.10 possibly_damaging(0.573) TCGA-IC-A6RE-01 15 39544511 39544511 A G C15orf54 Missense_Mutation p.T59A 0.13 tolerated_low_confidence(0.1) benign(0.004) TCGA-IC-A6RE-01 15 41771390 41771390 G C RTF1 Missense_Mutation p.M636I 0.11 tolerated(0.46) benign(0.007) TCGA-IC-A6RE-01 15 42264525 42264525 G A EHD4 Silent p.A56A 0.11 TCGA-IC-A6RE-01 15 43212971 43212971 T A TTBK2 5'Flank 0.14 TCGA-IC-A6RE-01 15 59799504 59799504 T G FAM81A Missense_Mutation p.L169R 0.11 tolerated(0.05) benign(0.153) TCGA-IC-A6RE-01 15 64005604 64005604 G A HERC1 Nonsense_Mutation p.Q1471* 0.20 TCGA-IC-A6RE-01 15 65255856 65255856 G A SPG21 3'UTR 0.16 TCGA-IC-A6RE-01 15 68582040 68582040 A G FEM1B Missense_Mutation p.N115S 0.30 deleterious(0) probably_damaging(0.996) TCGA-IC-A6RE-01 15 69692375 69692375 G A PAQR5 Missense_Mutation p.M224I 0.17 tolerated(0.4) benign(0.02) TCGA-IC-A6RE-01 15 72040778 72040778 G A THSD4 Missense_Mutation p.V754M 0.09 tolerated(0.06) possibly_damaging(0.59) TCGA-IC-A6RE-01 15 73566202 73566202 G A NEO1 Missense_Mutation p.V1006I 0.22 tolerated(0.12) probably_damaging(0.993) TCGA-IC-A6RE-01 15 73580673 73580673 T A NEO1 Missense_Mutation p.S1144T 0.19 deleterious(0.03) probably_damaging(0.935) TCGA-IC-A6RE-01 15 74467812 74467812 C A ISLR Missense_Mutation p.Q205K 0.23 tolerated(0.76) benign(0.292) TCGA-IC-A6RE-01 15 78317636 78317636 G A TBC1D2B Silent p.L351L 0.11 TCGA-IC-A6RE-01 15 79221834 79221834 C A CTSH Missense_Mutation p.G184C 0.20 deleterious(0.03) probably_damaging(1) TCGA-IC-A6RE-01 15 83826671 83826671 T G HDGFRP3 Missense_Mutation p.K95T 0.16 tolerated(0.09) benign(0.194) TCGA-IC-A6RE-01 15 85259361 85259361 C A SEC11A 5'UTR 0.21 TCGA-IC-A6RE-01 15 85400659 85400659 T C ALPK3 Missense_Mutation p.F1099S 0.31 deleterious_low_confidence(0.05) benign(0.164) TCGA-IC-A6RE-01 15 94304129 94304129 A C CTD-3049M7.1 RNA 0.13 TCGA-IC-A6RE-01 16 10721434 10721434 C T TEKT5 3'UTR 0.36 TCGA-IC-A6RE-01 16 20360192 20360192 T C UMOD Missense_Mutation p.D144G 0.08 deleterious(0.02) possibly_damaging(0.905) TCGA-IC-A6RE-01 16 20566633 20566633 T G ACSM2B Missense_Mutation p.E185A 0.23 tolerated(0.05) benign(0.049) TCGA-IC-A6RE-01 16 23768870 23768870 T G CHP2 Missense_Mutation p.V186G 0.23 deleterious(0) possibly_damaging(0.643) TCGA-IC-A6RE-01 16 2817411 2817411 T G SRRM2 Silent p.A2294A 0.46 TCGA-IC-A6RE-01 16 30545589 30545589 T A ZNF747 Nonsense_Mutation p.R138* 0.11 TCGA-IC-A6RE-01 16 30545590 30545590 C A AC002310.13 Nonsense_Mutation p.E80* 0.11 TCGA-IC-A6RE-01 16 3197439 3197439 C A CASP16 Missense_Mutation p.Q34K 0.50 tolerated(0.08) benign(0.048) TCGA-IC-A6RE-01 16 4412009 4412009 C T CORO7 Missense_Mutation p.G519R 0.38 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 16 53635631 53635631 T G RPGRIP1L 3'UTR 0.12 TCGA-IC-A6RE-01 16 55364315 55364315 G A IRX6 3'UTR 0.33 TCGA-IC-A6RE-01 16 65005896 65005896 A C CDH11 Missense_Mutation p.F488V 0.08 deleterious(0.05) benign(0.112) TCGA-IC-A6RE-01 16 67203850 67203850 G A NOL3 5'Flank 0.13 TCGA-IC-A6RE-01 16 67763629 67763629 G C RANBP10 Missense_Mutation p.S367R 0.06 tolerated(0.54) benign(0.308) TCGA-IC-A6RE-01 16 70993683 70993683 T G HYDIN Missense_Mutation p.E2003D 0.21 probably_damaging(0.953) TCGA-IC-A6RE-01 16 72046075 72046075 G A DHODH Missense_Mutation p.D50N 0.09 tolerated(0.13) benign(0.003) TCGA-IC-A6RE-01 16 74670448 74670448 T C RFWD3 Missense_Mutation p.S408G 0.23 tolerated(0.63) benign(0) TCGA-IC-A6RE-01 16 75263768 75263768 C T BCAR1 Missense_Mutation p.E798K 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-IC-A6RE-01 16 77353779 77353779 C T ADAMTS18 Silent p.A833A 0.32 TCGA-IC-A6RE-01 16 81194389 81194389 C T PKD1L2 RNA 0.08 TCGA-IC-A6RE-01 16 84228661 84228661 T A ADAD2 Intron 0.16 TCGA-IC-A6RE-01 17 10399820 10399820 T G MYH1 Missense_Mutation p.E1568A 0.17 deleterious(0) possibly_damaging(0.486) TCGA-IC-A6RE-01 17 11511558 11511558 T A DNAH9 Missense_Mutation p.L177H 0.17 possibly_damaging(0.566) TCGA-IC-A6RE-01 17 1326483 1326483 C T CRK 3'UTR 0.17 TCGA-IC-A6RE-01 17 16216893 16216893 C T PIGL Silent p.G153G 0.46 TCGA-IC-A6RE-01 17 22024359 22024359 T G MTRNR2L1 3'Flank 0.12 TCGA-IC-A6RE-01 17 2276309 2276309 C T SGSM2 Silent p.R617R 0.14 TCGA-IC-A6RE-01 17 26667392 26667392 G C TNFAIP1 Missense_Mutation p.R88P 0.20 deleterious(0) probably_damaging(0.997) TCGA-IC-A6RE-01 17 27071173 27071173 C G TRAF4 Missense_Mutation p.R15G 0.29 deleterious(0.01) benign(0.268) TCGA-IC-A6RE-01 17 27898728 27898728 G A TP53I13 Silent p.T101T 0.24 TCGA-IC-A6RE-01 17 32685466 32685466 A G CCL13 3'UTR 0.49 TCGA-IC-A6RE-01 17 33592830 33592830 G C SLFN5 Missense_Mutation p.A867P 0.12 tolerated(0.14) possibly_damaging(0.462) TCGA-IC-A6RE-01 17 3397735 3397735 C A ASPA Silent p.I242I 0.12 TCGA-IC-A6RE-01 17 36623420 36623420 G T ARHGAP23 Missense_Mutation p.R499L 0.20 deleterious(0) possibly_damaging(0.83) TCGA-IC-A6RE-01 17 37186234 37186234 C T CTD-2206N4.2 5'Flank 0.06 TCGA-IC-A6RE-01 17 37657541 37657541 T A CDK12 Missense_Mutation p.L820I 0.12 possibly_damaging(0.856) TCGA-IC-A6RE-01 17 38328302 38328302 C G CASC3 3'UTR 0.03 TCGA-IC-A6RE-01 17 38520359 38520359 G A CTD-2267D19.3 3'UTR 0.69 TCGA-IC-A6RE-01 17 38859476 38859476 T G KRT24 Missense_Mutation p.K157T 0.08 deleterious(0) probably_damaging(0.984) TCGA-IC-A6RE-01 17 38928284 38928284 A C KRT26 Missense_Mutation p.F28V 0.09 deleterious(0.04) benign(0.062) TCGA-IC-A6RE-01 17 38938665 38938665 T G KRT27 Silent p.G27G 0.08 TCGA-IC-A6RE-01 17 38991795 38991795 T G TMEM99 3'UTR 0.12 TCGA-IC-A6RE-01 17 43515252 43515252 T C PLEKHM1 Missense_Mutation p.K1048R 0.06 tolerated(0.31) benign(0.09) TCGA-IC-A6RE-01 17 4578413 4578413 C T PELP1 Missense_Mutation p.G412D 0.07 probably_damaging(0.972) TCGA-IC-A6RE-01 17 46622245 46622245 C T HOXB2 Missense_Mutation p.G10E 0.18 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 17 57344462 57344462 T G GDPD1 Missense_Mutation p.F213V 0.21 deleterious(0) benign(0.297) TCGA-IC-A6RE-01 17 59152324 59152324 T G BCAS3 Silent p.S706S 0.07 TCGA-IC-A6RE-01 17 67125826 67125826 T C ABCA6 Missense_Mutation p.I286M 0.14 tolerated(0.08) probably_damaging(0.991) TCGA-IC-A6RE-01 17 7077250 7077250 G A ASGR1 Intron 0.16 TCGA-IC-A6RE-01 17 73164401 73164401 C G SUMO2 3'UTR 0.25 TCGA-IC-A6RE-01 17 73279593 73279593 A G SLC25A19 Missense_Mutation p.C124R 0.19 deleterious(0) probably_damaging(0.969) TCGA-IC-A6RE-01 17 7369677 7369677 G A ZBTB4 Silent p.L148L 0.21 TCGA-IC-A6RE-01 17 7495988 7495988 T A MPDU1 3'Flank 0.40 TCGA-IC-A6RE-01 17 7577099 7577099 C T TP53 Missense_Mutation p.R280K 0.72 deleterious(0.04) possibly_damaging(0.83) TCGA-IC-A6RE-01 18 21116666 21116666 G A NPC1 Silent p.N1072N 0.26 TCGA-IC-A6RE-01 18 44585961 44585961 A C KATNAL2 Missense_Mutation p.N90T 0.10 tolerated(0.13) benign(0.017) TCGA-IC-A6RE-01 18 51025732 51025732 T A DCC Silent p.S1321S 0.32 TCGA-IC-A6RE-01 18 52890751 52890751 G A TCF4 3'Flank 0.16 TCGA-IC-A6RE-01 18 6171845 6171845 G A L3MBTL4 Missense_Mutation p.P360S 0.33 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 18 65177012 65177012 A T DSEL 3'UTR 0.44 TCGA-IC-A6RE-01 18 6882152 6882152 T G ARHGAP28 Missense_Mutation p.L277R 0.36 deleterious(0) probably_damaging(0.997) TCGA-IC-A6RE-01 18 6966263 6966263 G A LAMA1 Silent p.D2311D 0.29 TCGA-IC-A6RE-01 18 6985297 6985297 G C LAMA1 Missense_Mutation p.L1867V 0.09 tolerated(0.08) benign(0.126) TCGA-IC-A6RE-01 18 71740727 71740727 T A FBXO15 Missense_Mutation p.K501I 0.54 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 18 7231776 7231776 T A LRRC30 Missense_Mutation p.F214I 0.34 tolerated(0.06) benign(0.303) TCGA-IC-A6RE-01 18 73000872 73000872 G C TSHZ1 3'UTR 0.13 TCGA-IC-A6RE-01 19 10154379 10154379 A G C3P1 RNA 0.08 TCGA-IC-A6RE-01 19 11144051 11144051 A C SMARCA4 Missense_Mutation p.E1211A 0.09 benign(0.297) TCGA-IC-A6RE-01 19 1268365 1268365 G A CIRBP Intron 0.05 TCGA-IC-A6RE-01 19 14752277 14752277 A T EMR3 Missense_Mutation p.L401Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-IC-A6RE-01 19 15586453 15586453 A G PGLYRP2 Missense_Mutation p.L343P 0.29 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 19 15648359 15648359 G A CYP4F22 Silent p.L145L 0.09 TCGA-IC-A6RE-01 19 17942140 17942140 T G JAK3 Missense_Mutation p.S959R 0.08 tolerated(0.06) probably_damaging(0.918) TCGA-IC-A6RE-01 19 20607676 20607676 C T ZNF826P RNA 0.15 TCGA-IC-A6RE-01 19 21132738 21132738 A C ZNF85 Missense_Mutation p.K473T 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-IC-A6RE-01 19 22951136 22951136 T G ZNF99 Missense_Mutation p.K66T 0.39 tolerated(0.06) possibly_damaging(0.824) TCGA-IC-A6RE-01 19 23928012 23928012 T G ZNF681 Missense_Mutation p.S114R 0.48 tolerated(1) benign(0.012) TCGA-IC-A6RE-01 19 36674142 36674142 C A ZNF565 Missense_Mutation p.Q242H 0.29 tolerated(0.07) benign(0.008) TCGA-IC-A6RE-01 19 37960418 37960418 A C ZNF570 5'UTR 0.38 TCGA-IC-A6RE-01 19 38104226 38104226 A C ZNF540 3'UTR 0.59 TCGA-IC-A6RE-01 19 38378044 38378044 T C WDR87 Silent p.R2050R 0.08 TCGA-IC-A6RE-01 19 38794901 38794901 C G C19orf33 5'UTR 0.15 TCGA-IC-A6RE-01 19 39976910 39976910 C A TIMM50 Silent p.I295I 0.28 TCGA-IC-A6RE-01 19 40357618 40357618 C T FCGBP Missense_Mutation p.R5232H 0.09 benign(0.034) TCGA-IC-A6RE-01 19 41903735 41903735 G T BCKDHA Translation_Start_Site p.M1? 0.16 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-IC-A6RE-01 19 43430787 43430787 G C PSG7 Missense_Mutation p.P264R 0.22 deleterious(0.01) probably_damaging(0.995) TCGA-IC-A6RE-01 19 44099419 44099419 G A IRGQ Silent p.I24I 0.30 TCGA-IC-A6RE-01 19 44661688 44661688 A C ZNF234 Missense_Mutation p.T507P 0.26 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 19 45532204 45532204 C A RELB Nonsense_Mutation p.C315* 0.24 TCGA-IC-A6RE-01 19 45988721 45988721 A G RTN2 3'UTR 0.13 TCGA-IC-A6RE-01 19 47725010 47725010 A G BBC3 Missense_Mutation p.L245P 0.10 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-IC-A6RE-01 19 49994080 49994080 C T RPL13A Missense_Mutation p.R101C 0.26 deleterious(0.01) benign(0.075) TCGA-IC-A6RE-01 19 50093249 50093249 C T PRRG2 Missense_Mutation p.T177I 0.21 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RE-01 19 50342059 50342059 A G MED25 3'Flank 0.09 TCGA-IC-A6RE-01 19 51358197 51358197 G C KLK3 5'UTR 0.26 TCGA-IC-A6RE-01 19 52505106 52505106 A G ZNF615 Silent p.T66T 0.07 TCGA-IC-A6RE-01 19 52620093 52620093 A G ZNF616 Silent p.D108D 0.18 TCGA-IC-A6RE-01 19 52887662 52887662 T C ZNF880 Missense_Mutation p.F277L 0.10 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 19 53269900 53269900 T A ZNF600 Missense_Mutation p.K370M 0.09 tolerated(0.35) benign(0.072) TCGA-IC-A6RE-01 19 53611625 53611625 C T ZNF415 3'UTR 0.14 TCGA-IC-A6RE-01 19 53994412 53994412 G C ZNF813 Missense_Mutation p.S309T 0.14 tolerated(0.25) benign(0.012) TCGA-IC-A6RE-01 19 54259997 54259997 T C MIR516A1 RNA 0.34 TCGA-IC-A6RE-01 19 55738621 55738621 C G TMEM86B Missense_Mutation p.M203I 0.55 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 19 56888972 56888972 C A AC006116.24 5'Flank 0.56 TCGA-IC-A6RE-01 19 59022820 59022820 C A SLC27A5 Missense_Mutation p.S168I 0.09 tolerated(0.17) benign(0.014) TCGA-IC-A6RE-01 19 7979057 7979057 T C MAP2K7 3'UTR 0.19 TCGA-IC-A6RE-01 19 8841919 8841919 T G OR2Z1 Missense_Mutation p.F177V 0.52 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 19 9046663 9046663 T C MUC16 Silent p.P11656P 0.09 TCGA-IC-A6RE-01 19 9073947 9073947 C - MUC16 Frame_Shift_Del p.S4500Tfs*5 0.13 TCGA-IC-A6RE-01 19 9075129 9075129 C G MUC16 Missense_Mutation p.S4106T 0.20 unknown(0) TCGA-IC-A6RE-01 19 9083064 9083064 A C MUC16 Missense_Mutation p.I2917M 0.11 unknown(0) TCGA-IC-A6RE-01 1 109813595 109813597 CTG - CELSR2 In_Frame_Del p.C2511del 0.25 TCGA-IC-A6RE-01 1 110128893 110128893 G A GNAI3 Missense_Mutation p.E216K 0.10 deleterious(0) possibly_damaging(0.891) TCGA-IC-A6RE-01 1 110656051 110656051 T C UBL4B 3'UTR 0.23 TCGA-IC-A6RE-01 1 111442367 111442367 T A CD53 3'UTR 0.20 TCGA-IC-A6RE-01 1 112281959 112281959 C A FAM212B 5'UTR 0.29 TCGA-IC-A6RE-01 1 116234365 116234365 T A VANGL1 3'UTR 0.19 TCGA-IC-A6RE-01 1 118169234 118169234 C T FAM46C 3'UTR 0.11 TCGA-IC-A6RE-01 1 12567015 12567015 A T VPS13D Missense_Mutation p.E4301D 0.22 probably_damaging(0.953) TCGA-IC-A6RE-01 1 12855998 12855998 T A PRAMEF1 Missense_Mutation p.N426K 0.09 tolerated(0.29) benign(0.014) TCGA-IC-A6RE-01 1 13001286 13001286 T G PRAMEF6 Missense_Mutation p.T133P 0.10 tolerated(0.28) benign(0.004) TCGA-IC-A6RE-01 1 13001306 13001306 A C PRAMEF6 Missense_Mutation p.L126R 0.12 tolerated(0.41) possibly_damaging(0.533) TCGA-IC-A6RE-01 1 145415834 145415834 G A HFE2 Missense_Mutation p.R218Q 0.39 deleterious(0.03) benign(0.017) TCGA-IC-A6RE-01 1 150691959 150691959 C G HORMAD1 Missense_Mutation p.R8T 0.33 deleterious(0) possibly_damaging(0.694) TCGA-IC-A6RE-01 1 151314548 151314548 G A RFX5 3'UTR 0.17 TCGA-IC-A6RE-01 1 152283719 152283719 T G FLG Missense_Mutation p.S1215R 0.16 benign(0.307) TCGA-IC-A6RE-01 1 152286751 152286751 A C FLG Missense_Mutation p.L204R 0.20 benign(0.242) TCGA-IC-A6RE-01 1 152329678 152329678 T C FLG2 Missense_Mutation p.D195G 0.13 unknown(0) TCGA-IC-A6RE-01 1 153913489 153913489 C T DENND4B Missense_Mutation p.G406D 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-IC-A6RE-01 1 154321981 154321981 C T ATP8B2 3'UTR 0.16 TCGA-IC-A6RE-01 1 154521269 154521269 C A UBE2Q1 3'UTR 0.18 TCGA-IC-A6RE-01 1 154987372 154987372 C T ZBTB7B Missense_Mutation p.T113M 0.15 tolerated_low_confidence(0.14) benign(0.003) TCGA-IC-A6RE-01 1 155448920 155448920 T C ASH1L Silent p.K1247K 0.48 TCGA-IC-A6RE-01 1 158617477 158617477 T C SPTA1 Missense_Mutation p.S1250G 0.46 deleterious(0.04) benign(0.174) TCGA-IC-A6RE-01 1 159284376 159284376 T C OR10J3 Missense_Mutation p.K25R 0.16 tolerated(0.66) benign(0.002) TCGA-IC-A6RE-01 1 170708458 170708458 T G PRRX1 3'UTR 0.25 TCGA-IC-A6RE-01 1 171519354 171519354 G T PRRC2C Missense_Mutation p.R1699L 0.19 unknown(0) TCGA-IC-A6RE-01 1 179380295 179380295 A C AXDND1 Missense_Mutation p.Y375S 0.31 deleterious(0) probably_damaging(0.961) TCGA-IC-A6RE-01 1 180059910 180059910 G C CEP350 Missense_Mutation p.E2163Q 0.07 benign(0.082) TCGA-IC-A6RE-01 1 185988735 185988735 G A HMCN1 Missense_Mutation p.A1845T 0.42 benign(0.004) TCGA-IC-A6RE-01 1 186083996 186083996 T C HMCN1 Silent p.H3774H 0.05 TCGA-IC-A6RE-01 1 196758949 196758949 C T CFHR3 Intron 0.43 TCGA-IC-A6RE-01 1 197065138 197065138 C T ASPM Missense_Mutation p.E2993K 0.14 tolerated(0.24) benign(0.009) TCGA-IC-A6RE-01 1 201869082 201869082 C T LMOD1 Silent p.E353E 0.44 TCGA-IC-A6RE-01 1 207790008 207790008 T G CR1 Silent p.S2250S 0.04 TCGA-IC-A6RE-01 1 216074201 216074201 G T USH2A Silent p.T2449T 0.32 TCGA-IC-A6RE-01 1 216373122 216373122 C G USH2A Missense_Mutation p.V1220L 0.12 benign(0.086) TCGA-IC-A6RE-01 1 218614815 218614815 G C TGFB2 3'UTR 0.08 TCGA-IC-A6RE-01 1 220953534 220953534 A G MARC2 Silent p.P279P 0.06 TCGA-IC-A6RE-01 1 223816399 223816399 A T CAPN8 Missense_Mutation p.F131I 0.09 benign(0.36) TCGA-IC-A6RE-01 1 225569205 225569206 GA - DNAH14 Frame_Shift_Del p.E3225Dfs*12 0.15 TCGA-IC-A6RE-01 1 227178856 227178856 G A CDC42BPA 3'UTR 0.17 TCGA-IC-A6RE-01 1 231124166 231124166 T G ARV1 Missense_Mutation p.L92R 0.17 deleterious(0) probably_damaging(0.988) TCGA-IC-A6RE-01 1 232650209 232650209 G A SIPA1L2 Nonsense_Mutation p.R293* 0.19 TCGA-IC-A6RE-01 1 237794767 237794767 C A RYR2 Missense_Mutation p.L2161I 0.31 probably_damaging(0.999) TCGA-IC-A6RE-01 1 24408602 24408602 G - MYOM3 Frame_Shift_Del p.K724Sfs*138 0.10 TCGA-IC-A6RE-01 1 246939869 246939869 A G RP11-439E19.10 3'Flank 0.15 TCGA-IC-A6RE-01 1 248344067 248344067 A G OR2M2 Missense_Mutation p.I260M 0.15 tolerated(1) benign(0.005) TCGA-IC-A6RE-01 1 248525601 248525601 T A OR2T4 Missense_Mutation p.L240H 0.42 deleterious(0) probably_damaging(0.996) TCGA-IC-A6RE-01 1 28802646 28802646 A C PHACTR4 Missense_Mutation p.Q493H 0.12 tolerated(0.07) benign(0.044) TCGA-IC-A6RE-01 1 34011676 34011676 C G CSMD2 Missense_Mutation p.A2877P 0.25 tolerated(0.8) benign(0.013) TCGA-IC-A6RE-01 1 34166250 34166250 G A CSMD2 Silent p.S1160S 0.08 TCGA-IC-A6RE-01 1 34663141 34663141 T A C1orf94 Nonsense_Mutation p.C212* 0.24 TCGA-IC-A6RE-01 1 36521652 36521652 T - AGO3 3'UTR 0.15 TCGA-IC-A6RE-01 1 42644487 42644487 C T FOXJ3 3'UTR 0.07 TCGA-IC-A6RE-01 1 4772429 4772429 T G AJAP1 Missense_Mutation p.F167V 0.22 deleterious(0.04) possibly_damaging(0.859) TCGA-IC-A6RE-01 1 51001111 51001111 T A FAF1 Missense_Mutation p.E475V 0.35 deleterious(0) probably_damaging(0.986) TCGA-IC-A6RE-01 1 53904718 53904718 A C SLC25A3P1 RNA 0.44 TCGA-IC-A6RE-01 1 67185003 67185003 A G SGIP1 Missense_Mutation p.T553A 0.26 deleterious(0) benign(0.018) TCGA-IC-A6RE-01 1 67519675 67519675 G A SLC35D1 Nonsense_Mutation p.Q8* 0.14 TCGA-IC-A6RE-01 1 74671035 74671035 T G FPGT Missense_Mutation p.I435S 0.08 deleterious(0) probably_damaging(0.983) TCGA-IC-A6RE-01 1 76288110 76288110 T C MSH4 Missense_Mutation p.F336L 0.09 tolerated(0.23) benign(0.107) TCGA-IC-A6RE-01 1 76378616 76378616 G T MSH4 3'UTR 0.14 TCGA-IC-A6RE-01 1 8414696 8414696 T A RERE 3'UTR 0.24 TCGA-IC-A6RE-01 1 84702956 84702956 A C PRKACB 3'UTR 0.13 TCGA-IC-A6RE-01 1 91816414 91816414 A C HFM1 Missense_Mutation p.L696R 0.12 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 1 92642532 92642532 T C KIAA1107 Silent p.N156N 0.06 TCGA-IC-A6RE-01 1 92730170 92730170 A T GLMN Missense_Mutation p.S414T 0.16 deleterious(0.01) benign(0.438) TCGA-IC-A6RE-01 1 95286603 95286603 G A SLC44A3 Nonsense_Mutation p.W42* 0.33 TCGA-IC-A6RE-01 1 99771718 99771718 A G LPPR4 Missense_Mutation p.S482G 0.33 tolerated(0.19) possibly_damaging(0.559) TCGA-IC-A6RE-01 20 17207905 17207905 G A PCSK2 5'UTR 0.30 TCGA-IC-A6RE-01 20 18296340 18296340 A T ZNF133 Missense_Mutation p.K281M 0.08 deleterious(0.01) probably_damaging(0.982) TCGA-IC-A6RE-01 20 20020401 20020401 T G CRNKL1 Missense_Mutation p.K627T 0.06 tolerated(0.39) benign(0.008) TCGA-IC-A6RE-01 20 30053340 30053340 G A DEFB124 Missense_Mutation p.P62L 0.11 deleterious_low_confidence(0) benign(0.276) TCGA-IC-A6RE-01 20 36869850 36869850 A T KIAA1755 Missense_Mutation p.L228H 0.44 tolerated(0.55) possibly_damaging(0.827) TCGA-IC-A6RE-01 20 377156 377156 C T TRIB3 Missense_Mutation p.P300L 0.29 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 20 42908073 42908073 G A GDAP1L1 3'UTR 0.17 TCGA-IC-A6RE-01 20 44685162 44685162 T A SLC12A5 Silent p.P1046P 0.39 TCGA-IC-A6RE-01 20 44687008 44687008 C T SLC12A5 3'Flank 0.12 TCGA-IC-A6RE-01 20 45130013 45130013 A G ZNF334 Silent p.P655P 0.04 TCGA-IC-A6RE-01 20 60711998 60711998 T C PSMA7 Missense_Mutation p.N221S 0.53 tolerated(0.96) benign(0) TCGA-IC-A6RE-01 20 61445142 61445142 A G OGFR 3'UTR 0.29 TCGA-IC-A6RE-01 20 8630090 8630090 T G PLCB1 Silent p.S196S 0.07 TCGA-IC-A6RE-01 20 8678367 8678367 G T PLCB1 Silent p.R368R 0.14 TCGA-IC-A6RE-01 20 8864456 8864456 T G PLCB1 3'UTR 0.19 TCGA-IC-A6RE-01 21 15517060 15517060 G C LIPI Missense_Mutation p.D414E 0.05 deleterious(0.01) probably_damaging(0.93) TCGA-IC-A6RE-01 21 19168961 19168963 TCT - C21orf91 In_Frame_Del p.E201del 0.30 TCGA-IC-A6RE-01 21 20058469 20058469 T G MIR548X RNA 0.30 TCGA-IC-A6RE-01 21 27347420 27347420 T C APP Missense_Mutation p.E474G 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-IC-A6RE-01 21 31965360 31965360 T G KRTAP6-3 3'UTR 0.18 TCGA-IC-A6RE-01 21 32015193 32015193 T C KRTAP20-3 5'UTR 0.31 TCGA-IC-A6RE-01 21 32503209 32503209 A C TIAM1 Missense_Mutation p.L1314R 0.43 deleterious(0) benign(0.229) TCGA-IC-A6RE-01 21 35195800 35195800 C T ITSN1 Missense_Mutation p.A1009V 0.41 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 21 35229051 35229051 T A ITSN1 Missense_Mutation p.L1225I 0.07 deleterious(0.01) probably_damaging(0.966) TCGA-IC-A6RE-01 21 45539308 45539308 C G PWP2 Silent p.S364S 0.30 TCGA-IC-A6RE-01 21 47783564 47783564 G C PCNT Missense_Mutation p.R775T 0.06 possibly_damaging(0.587) TCGA-IC-A6RE-01 22 16449036 16449036 C T OR11H1 Missense_Mutation p.G257R 0.06 deleterious(0.02) probably_damaging(0.989) TCGA-IC-A6RE-01 22 20640900 20640900 G A AC011718.2 Intron 0.09 TCGA-IC-A6RE-01 22 21346611 21346611 G C LZTR1 Missense_Mutation p.D368H 0.11 deleterious_low_confidence(0) benign(0.123) TCGA-IC-A6RE-01 22 21800741 21800741 G T HIC2 Silent p.T519T 0.20 TCGA-IC-A6RE-01 22 24036564 24036564 G T RGL4 Missense_Mutation p.V315L 0.17 tolerated(1) benign(0.023) TCGA-IC-A6RE-01 22 31218568 31218568 C G OSBP2 Intron 0.43 TCGA-IC-A6RE-01 22 31722489 31722489 A C PATZ1 3'UTR 0.34 TCGA-IC-A6RE-01 22 32841868 32841868 G C BPIFC Missense_Mutation p.Q164E 0.34 tolerated(0.08) possibly_damaging(0.77) TCGA-IC-A6RE-01 22 37602865 37602865 C A SSTR3 Missense_Mutation p.R326S 0.06 deleterious(0.01) probably_damaging(0.919) TCGA-IC-A6RE-01 22 38061577 38061577 C T PDXP Missense_Mutation p.A197V 0.08 tolerated(1) benign(0.001) TCGA-IC-A6RE-01 22 38914953 38914953 T A DMC1 3'Flank 0.34 TCGA-IC-A6RE-01 22 41940092 41940092 A C POLR3H Missense_Mutation p.V5G 0.08 deleterious(0) benign(0.028) TCGA-IC-A6RE-01 22 41940093 41940093 C A POLR3H Missense_Mutation p.V5L 0.08 deleterious(0.04) benign(0.001) TCGA-IC-A6RE-01 22 42180705 42180705 C A MEI1 Missense_Mutation p.A1088D 0.16 tolerated(0.14) benign(0.007) TCGA-IC-A6RE-01 22 43950774 43950774 C T EFCAB6 Missense_Mutation p.R1208H 0.44 tolerated(1) benign(0.001) TCGA-IC-A6RE-01 22 44364657 44364657 G A SAMM50 Missense_Mutation p.G94E 0.29 deleterious(0.05) probably_damaging(0.99) TCGA-IC-A6RE-01 22 46656636 46656636 A G PKDREJ Missense_Mutation p.Y862H 0.06 tolerated(0.3) benign(0.025) TCGA-IC-A6RE-01 2 102959851 102959851 G A IL1RL1 Missense_Mutation p.V316I 0.18 tolerated(0.64) benign(0.001) TCGA-IC-A6RE-01 2 107004042 107004042 A G PLGLA RNA 0.16 TCGA-IC-A6RE-01 2 116510750 116510750 A C DPP10 Missense_Mutation p.R321S 0.52 tolerated(0.19) benign(0.065) TCGA-IC-A6RE-01 2 116593762 116593762 C G DPP10 Missense_Mutation p.I664M 0.07 tolerated(0.53) benign(0.035) TCGA-IC-A6RE-01 2 118693100 118693100 C A CCDC93 Missense_Mutation p.V567L 0.17 deleterious(0.05) possibly_damaging(0.62) TCGA-IC-A6RE-01 2 130900418 130900418 G A CCDC74B Intron 0.16 TCGA-IC-A6RE-01 2 141986843 141986843 T C LRP1B Silent p.R253R 0.32 TCGA-IC-A6RE-01 2 142012179 142012179 A G LRP1B Silent p.C125C 0.20 TCGA-IC-A6RE-01 2 149544012 149544040 AAGGCAACACTCTGTGGATCACAGAGTGT - EPC2 3'UTR 0.68 TCGA-IC-A6RE-01 2 15615819 15615819 T A NBAS Missense_Mutation p.S445C 0.21 deleterious(0.03) possibly_damaging(0.695) TCGA-IC-A6RE-01 2 159537122 159537122 T C PKP4 Missense_Mutation p.F1171S 0.15 deleterious(0) probably_damaging(0.939) TCGA-IC-A6RE-01 2 163374290 163374290 C A KCNH7 Missense_Mutation p.G281V 0.12 deleterious(0.02) benign(0.271) TCGA-IC-A6RE-01 2 164467610 164467610 A C FIGN Missense_Mutation p.S244R 0.34 tolerated(0.6) benign(0.044) TCGA-IC-A6RE-01 2 166781103 166781103 A G TTC21B Missense_Mutation p.L491P 0.09 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RE-01 2 169707381 169707381 C G NOSTRIN Silent p.V222V 0.13 TCGA-IC-A6RE-01 2 169984893 169984893 A G LRP2 3'UTR 0.29 TCGA-IC-A6RE-01 2 179259041 179259041 T G OSBPL6 Missense_Mutation p.F884V 0.14 deleterious(0.03) benign(0.014) TCGA-IC-A6RE-01 2 179439225 179439225 T G TTN Missense_Mutation p.K23878N 0.13 TCGA-IC-A6RE-01 2 179606379 179606379 T - TTN Frame_Shift_Del p.T3861Pfs*17 0.36 TCGA-IC-A6RE-01 2 18112861 18112861 C A KCNS3 Missense_Mutation p.L196M 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-IC-A6RE-01 2 183960176 183960176 T C DUSP19 Silent p.V148V 0.08 TCGA-IC-A6RE-01 2 187694604 187694604 T G ZSWIM2 Missense_Mutation p.Q315H 0.08 tolerated(0.07) benign(0.025) TCGA-IC-A6RE-01 2 188209859 188209859 A C CALCRL 3'UTR 0.13 TCGA-IC-A6RE-01 2 196801481 196801481 T A DNAH7 Missense_Mutation p.R1038S 0.14 tolerated(0.13) benign(0.005) TCGA-IC-A6RE-01 2 198650890 198650890 C T BOLL 5'UTR 0.27 TCGA-IC-A6RE-01 2 201688556 201688556 A G BZW1 3'Flank 0.28 TCGA-IC-A6RE-01 2 204293133 204293133 A G ABI2 3'UTR 0.06 TCGA-IC-A6RE-01 2 208632693 208632693 G A FZD5 Silent p.F257F 0.11 TCGA-IC-A6RE-01 2 208841894 208841894 T C PLEKHM3 Missense_Mutation p.T343A 0.18 tolerated(0.57) benign(0) TCGA-IC-A6RE-01 2 212566835 212566835 G T ERBB4 Missense_Mutation p.S449Y 0.19 deleterious(0) probably_damaging(0.992) TCGA-IC-A6RE-01 2 219557002 219557002 T C STK36 Missense_Mutation p.V634A 0.18 tolerated(0.65) benign(0.024) TCGA-IC-A6RE-01 2 220355177 220355177 C T SPEG Nonsense_Mutation p.R2990* 0.62 TCGA-IC-A6RE-01 2 223920189 223920189 A C KCNE4 3'UTR 0.56 TCGA-IC-A6RE-01 2 228860248 228860248 G C SPHKAP Silent p.L1537L 0.29 TCGA-IC-A6RE-01 2 231775283 231775283 A G GPR55 Missense_Mutation p.L132P 0.28 tolerated(0.09) probably_damaging(0.981) TCGA-IC-A6RE-01 2 242186238 242186238 T A HDLBP Missense_Mutation p.I627F 0.25 deleterious(0) benign(0.362) TCGA-IC-A6RE-01 2 25367891 25367891 G C EFR3B Missense_Mutation p.E705Q 0.11 tolerated(0.41) possibly_damaging(0.782) TCGA-IC-A6RE-01 2 25377167 25377167 C T EFR3B Silent p.I804I 0.14 TCGA-IC-A6RE-01 2 37295884 37295884 C A HEATR5B Missense_Mutation p.A373S 0.21 tolerated(0.06) possibly_damaging(0.828) TCGA-IC-A6RE-01 2 47314215 47314215 G C C2orf61 Missense_Mutation p.P227A 0.10 tolerated(0.29) benign(0.003) TCGA-IC-A6RE-01 2 50779946 50779946 G C NRXN1 Missense_Mutation p.P553R 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-IC-A6RE-01 2 54091583 54091583 C A PSME4 3'UTR 0.12 TCGA-IC-A6RE-01 2 61149587 61149587 C T REL Nonsense_Mutation p.Q593* 0.10 TCGA-IC-A6RE-01 2 64796810 64796810 A G AFTPH Silent p.G756G 0.06 TCGA-IC-A6RE-01 2 69093425 69093425 C A BMP10 Missense_Mutation p.D205Y 0.16 deleterious(0.03) benign(0.315) TCGA-IC-A6RE-01 2 73435556 73435556 C A NOTO Silent p.L137L 0.20 TCGA-IC-A6RE-01 2 75745265 75745265 A G EVA1A Translation_Start_Site p.M1? 0.50 deleterious_low_confidence(0.01) benign(0.402) TCGA-IC-A6RE-01 3 101090887 101090887 C T SENP7 Missense_Mutation p.G254D 0.16 tolerated(0.71) benign(0.004) TCGA-IC-A6RE-01 3 108626976 108626976 A C GUCA1C Missense_Mutation p.F175V 0.40 deleterious(0.01) benign(0.065) TCGA-IC-A6RE-01 3 111988862 111988862 T G SLC9C1 Missense_Mutation p.S226R 0.10 tolerated(0.13) possibly_damaging(0.839) TCGA-IC-A6RE-01 3 112642468 112642468 C G CD200R1 3'UTR 0.12 TCGA-IC-A6RE-01 3 113015696 113015696 T G WDR52 Missense_Mutation p.K1705T 0.23 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 3 113665196 113665196 T G GRAMD1C 3'UTR 0.21 TCGA-IC-A6RE-01 3 121179011 121179011 A C POLQ Silent p.R2346R 0.17 TCGA-IC-A6RE-01 3 130114047 130114047 A C COL6A5 Silent p.R1103R 0.12 TCGA-IC-A6RE-01 3 130114055 130114055 T A COL6A5 Silent p.A1105A 0.16 TCGA-IC-A6RE-01 3 130300658 130300658 T A COL6A6 Missense_Mutation p.D1267E 0.18 tolerated(1) benign(0.178) TCGA-IC-A6RE-01 3 13363225 13363225 A C NUP210 Missense_Mutation p.F1676V 0.26 tolerated(0.53) benign(0.003) TCGA-IC-A6RE-01 3 134911630 134911630 T G EPHB1 Missense_Mutation p.F699V 0.08 deleterious(0) probably_damaging(0.985) TCGA-IC-A6RE-01 3 141011698 141011698 A G ACPL2 Missense_Mutation p.E365G 0.31 tolerated(0.18) benign(0.014) TCGA-IC-A6RE-01 3 14530733 14530733 T - SLC6A6 3'UTR 0.19 TCGA-IC-A6RE-01 3 148897347 148897347 A C CP Missense_Mutation p.V886G 0.14 deleterious(0.01) probably_damaging(0.995) TCGA-IC-A6RE-01 3 150262197 150262197 T G SERP1 3'UTR 0.15 TCGA-IC-A6RE-01 3 151165478 151165478 T G IGSF10 Missense_Mutation p.K764T 0.13 deleterious(0) probably_damaging(0.933) TCGA-IC-A6RE-01 3 15219144 15219144 T G COL6A4P1 RNA 0.12 TCGA-IC-A6RE-01 3 155545733 155545733 T G SLC33A1 3'UTR 0.05 TCGA-IC-A6RE-01 3 15643304 15643304 C A BTD 5'UTR 0.15 TCGA-IC-A6RE-01 3 158288991 158288991 C T MLF1 5'Flank 0.11 TCGA-IC-A6RE-01 3 169824725 169824725 T G PHC3 Missense_Mutation p.E788A 0.05 deleterious(0.02) benign(0.364) TCGA-IC-A6RE-01 3 172350631 172350631 A G NCEH1 3'UTR 0.29 TCGA-IC-A6RE-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.10 deleterious(0.02) probably_damaging(0.959) TCGA-IC-A6RE-01 3 183097179 183097179 C T MCF2L2 Missense_Mutation p.A61T 0.29 deleterious(0.03) possibly_damaging(0.703) TCGA-IC-A6RE-01 3 183957262 183957262 C A VWA5B2 Silent p.G761G 0.55 TCGA-IC-A6RE-01 3 184056194 184056194 G A FAM131A Nonsense_Mutation p.W36* 0.08 TCGA-IC-A6RE-01 3 195063340 195063340 C - ACAP2 Frame_Shift_Del p.V130Sfs*9 0.17 TCGA-IC-A6RE-01 3 195594074 195594074 C A TNK2 Intron 0.23 TCGA-IC-A6RE-01 3 196753571 196753571 C T MFI2 Silent p.E88E 0.29 TCGA-IC-A6RE-01 3 20019889 20019889 G A RAB5A Missense_Mutation p.A176T 0.34 tolerated(0.1) possibly_damaging(0.474) TCGA-IC-A6RE-01 3 27418109 27418109 G A SLC4A7 3'UTR 0.20 TCGA-IC-A6RE-01 3 37458154 37458154 G C C3orf35 5'UTR 0.09 TCGA-IC-A6RE-01 3 38591997 38591997 A C SCN5A Missense_Mutation p.F1956V 0.41 tolerated(0.18) benign(0.236) TCGA-IC-A6RE-01 3 38913761 38913761 A G SCN11A Silent p.L1140L 0.18 TCGA-IC-A6RE-01 3 42916054 42916054 A G CYP8B1 Missense_Mutation p.F419L 0.16 deleterious(0) probably_damaging(0.997) TCGA-IC-A6RE-01 3 42956638 42956638 A G ZNF662 Missense_Mutation p.K384R 0.41 tolerated(0.06) benign(0.111) TCGA-IC-A6RE-01 3 46307746 46307746 A T CCR3 3'UTR 0.14 TCGA-IC-A6RE-01 3 46727899 46727899 C T ALS2CL Missense_Mutation p.A189T 0.40 tolerated(0.12) benign(0.013) TCGA-IC-A6RE-01 3 4704812 4704812 A G ITPR1 Silent p.Q477Q 0.08 TCGA-IC-A6RE-01 3 47287002 47287002 C T KIF9 Splice_Site p.X430_splice 0.11 TCGA-IC-A6RE-01 3 47452795 47452795 G C PTPN23 Missense_Mutation p.E1169D 0.28 benign(0.336) TCGA-IC-A6RE-01 3 49757186 49757186 G A AMIGO3 5'UTR 0.10 TCGA-IC-A6RE-01 3 50264518 50264518 T A GNAI2 5'UTR 0.21 TCGA-IC-A6RE-01 3 51112836 51112836 T A DOCK3 Missense_Mutation p.S172T 0.32 deleterious(0) benign(0.08) TCGA-IC-A6RE-01 3 51624572 51624572 G A RAD54L2 Missense_Mutation p.D46N 0.08 tolerated_low_confidence(1) unknown(0) TCGA-IC-A6RE-01 3 51624573 51624573 A T RAD54L2 Missense_Mutation p.D46V 0.08 tolerated_low_confidence(0.13) unknown(0) TCGA-IC-A6RE-01 3 52005657 52005657 G A ABHD14A 5'Flank 0.34 TCGA-IC-A6RE-01 3 5220797 5220797 G C ARL8B 3'UTR 0.09 TCGA-IC-A6RE-01 3 52581768 52581768 G T PBRM1 3'Flank 0.13 TCGA-IC-A6RE-01 3 52581769 52581769 T A PBRM1 3'Flank 0.11 TCGA-IC-A6RE-01 3 54952519 54952519 T G LRTM1 Missense_Mutation p.E335D 0.27 tolerated(0.22) benign(0.014) TCGA-IC-A6RE-01 3 58279350 58279350 A C ABHD6 Missense_Mutation p.K291T 0.15 tolerated(0.29) benign(0.02) TCGA-IC-A6RE-01 3 59999794 59999794 T C FHIT Missense_Mutation p.Q63R 0.12 deleterious(0.05) benign(0.221) TCGA-IC-A6RE-01 3 66434524 66434524 G A LRIG1 Silent p.D654D 0.18 TCGA-IC-A6RE-01 3 73673724 73673724 C T PDZRN3 Missense_Mutation p.A85T 0.31 tolerated(0.27) benign(0.089) TCGA-IC-A6RE-01 3 88041360 88041360 C A HTR1F 3'UTR 0.10 TCGA-IC-A6RE-01 3 88191630 88191630 C T ZNF654 3'UTR 0.20 TCGA-IC-A6RE-01 3 98490000 98490000 A G ST3GAL6 Intron 0.08 TCGA-IC-A6RE-01 4 106588326 106588326 T G ARHGEF38 Missense_Mutation p.L577R 0.13 deleterious(0) probably_damaging(0.982) TCGA-IC-A6RE-01 4 106600667 106600667 C G ARHGEF38 3'UTR 0.17 TCGA-IC-A6RE-01 4 114424089 114424089 T C CAMK2D Intron 0.28 TCGA-IC-A6RE-01 4 119036076 119036076 T C NDST3 Silent p.S395S 0.22 TCGA-IC-A6RE-01 4 119461452 119461452 A C CEP170P1 RNA 0.08 TCGA-IC-A6RE-01 4 123188104 123188104 G A KIAA1109 Missense_Mutation p.R2495K 0.28 benign(0.005) TCGA-IC-A6RE-01 4 123665939 123665939 A C BBS12 3'UTR 0.21 TCGA-IC-A6RE-01 4 128886250 128886250 G C MFSD8 Silent p.L13L 0.07 TCGA-IC-A6RE-01 4 129191662 129191662 T C PGRMC2 3'UTR 0.11 TCGA-IC-A6RE-01 4 13544075 13544075 C T NKX3-2 Missense_Mutation p.G182S 0.40 tolerated(0.73) benign(0.004) TCGA-IC-A6RE-01 4 13605188 13605188 T A BOD1L1 Silent p.T1112T 0.29 TCGA-IC-A6RE-01 4 139153457 139153457 C T SLC7A11 Missense_Mutation p.E162K 0.20 tolerated(0.91) benign(0.012) TCGA-IC-A6RE-01 4 141583207 141583207 T A TBC1D9 Missense_Mutation p.K548M 0.09 deleterious(0.02) probably_damaging(0.959) TCGA-IC-A6RE-01 4 144481247 144481247 A G SMARCA5 3'Flank 0.15 TCGA-IC-A6RE-01 4 148406992 148406992 A G EDNRA Silent p.Q53Q 0.27 TCGA-IC-A6RE-01 4 148464965 148464965 G T EDNRA 3'UTR 0.25 TCGA-IC-A6RE-01 4 148575339 148575339 C G PRMT10 Missense_Mutation p.G570A 0.17 tolerated(0.55) benign(0.001) TCGA-IC-A6RE-01 4 155460362 155460362 C A PLRG1 Missense_Mutation p.S349I 0.34 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 4 158091619 158091619 T C GLRB Silent p.S411S 0.07 TCGA-IC-A6RE-01 4 158286902 158286902 T - GRIA2 3'UTR 0.12 TCGA-IC-A6RE-01 4 162697055 162697055 A G FSTL5 Missense_Mutation p.L194P 0.37 tolerated(0.2) benign(0.203) TCGA-IC-A6RE-01 4 187541074 187541074 G C FAT1 Missense_Mutation p.D2222E 0.20 probably_damaging(0.957) TCGA-IC-A6RE-01 4 188924157 188924157 G C ZFP42 Missense_Mutation p.D66H 0.15 deleterious(0) possibly_damaging(0.879) TCGA-IC-A6RE-01 4 2498812 2498812 T G RNF4 Missense_Mutation p.S30A 0.06 tolerated(1) benign(0) TCGA-IC-A6RE-01 4 41652620 41652620 C T LIMCH1 Missense_Mutation p.L626F 0.25 tolerated(0.05) possibly_damaging(0.713) TCGA-IC-A6RE-01 4 4422615 4422615 C A STX18 Missense_Mutation p.K296N 0.16 deleterious(0) possibly_damaging(0.709) TCGA-IC-A6RE-01 4 46042448 46042448 A C GABRG1 3'UTR 0.28 TCGA-IC-A6RE-01 4 53470744 53470744 G A USP46 Silent p.F215F 0.28 TCGA-IC-A6RE-01 4 68688047 68688047 T C TMPRSS11D 3'UTR 0.22 TCGA-IC-A6RE-01 4 71255890 71255890 G T SMR3B 3'UTR 0.20 TCGA-IC-A6RE-01 4 76572306 76572306 G A G3BP2 Missense_Mutation p.R322C 0.33 deleterious(0) probably_damaging(0.987) TCGA-IC-A6RE-01 4 77652020 77652020 C T SHROOM3 Silent p.P173P 0.17 TCGA-IC-A6RE-01 4 82348727 82348727 G C RASGEF1B 3'UTR 0.15 TCGA-IC-A6RE-01 4 83279935 83279935 C T HNRNPD Silent p.V166V 0.07 TCGA-IC-A6RE-01 4 88731763 88731763 T G IBSP Silent p.T84T 0.30 TCGA-IC-A6RE-01 4 94343959 94343959 G A GRID2 Missense_Mutation p.G462D 0.22 deleterious(0.03) possibly_damaging(0.659) TCGA-IC-A6RE-01 4 96075696 96075696 C G BMPR1B Intron 0.21 TCGA-IC-A6RE-01 5 107703648 107703648 A - FBXL17 Frame_Shift_Del p.S334Pfs*24 0.16 TCGA-IC-A6RE-01 5 111496432 111496432 T C EPB41L4A 3'Flank 0.40 TCGA-IC-A6RE-01 5 111500608 111500608 A T EPB41L4A 3'UTR 0.28 TCGA-IC-A6RE-01 5 112174004 112174004 A C APC Missense_Mutation p.S905R 0.21 benign(0.268) TCGA-IC-A6RE-01 5 120021871 120021871 A C PRR16 Silent p.R105R 0.38 TCGA-IC-A6RE-01 5 126993548 126993548 A C CTXN3 3'UTR 0.08 TCGA-IC-A6RE-01 5 129520423 129520423 A - CHSY3 Frame_Shift_Del p.N530Tfs*24 0.24 TCGA-IC-A6RE-01 5 132223538 132223538 T G AFF4 Missense_Mutation p.K978T 0.24 deleterious(0) probably_damaging(0.988) TCGA-IC-A6RE-01 5 135692654 135692654 G A TRPC7 Missense_Mutation p.P141L 0.50 deleterious(0) benign(0.082) TCGA-IC-A6RE-01 5 137593388 137593388 G A GFRA3 Missense_Mutation p.P242L 0.30 deleterious(0.04) probably_damaging(0.96) TCGA-IC-A6RE-01 5 13769199 13769199 T G DNAH5 Missense_Mutation p.K3256T 0.10 benign(0.011) TCGA-IC-A6RE-01 5 137727387 137727387 A C KDM3B Missense_Mutation p.K689T 0.22 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-IC-A6RE-01 5 140264110 140264110 C G PCDHA13 Missense_Mutation p.Q753E 0.35 tolerated_low_confidence(0.07) benign(0.003) TCGA-IC-A6RE-01 5 140559227 140559227 G A PCDHB8 Missense_Mutation p.G538S 0.15 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-IC-A6RE-01 5 140581066 140581066 C T PCDHB11 Silent p.T573T 0.17 TCGA-IC-A6RE-01 5 145719175 145719175 C T POU4F3 Missense_Mutation p.A62V 0.30 deleterious(0.03) benign(0.059) TCGA-IC-A6RE-01 5 148207777 148207778 - T ADRB2 3'UTR 0.30 TCGA-IC-A6RE-01 5 149827198 149827198 G C RPS14 Missense_Mutation p.I33M 0.07 deleterious(0) probably_damaging(0.98) TCGA-IC-A6RE-01 5 149933675 149933675 C T NDST1 3'UTR 0.22 TCGA-IC-A6RE-01 5 150088667 150088667 C G DCTN4 3'Flank 0.06 TCGA-IC-A6RE-01 5 159682680 159682680 C T CCNJL Missense_Mutation p.A255T 0.35 deleterious(0.02) probably_damaging(0.967) TCGA-IC-A6RE-01 5 161300296 161300296 C A GABRA1 Missense_Mutation p.N143K 0.24 deleterious(0.03) benign(0.019) TCGA-IC-A6RE-01 5 168119626 168119626 C A SLIT3 Silent p.L1054L 0.38 TCGA-IC-A6RE-01 5 170738820 170738820 G A TLX3 3'UTR 0.21 TCGA-IC-A6RE-01 5 175813851 175813851 A T NOP16 Nonsense_Mutation p.Y92* 0.30 TCGA-IC-A6RE-01 5 175954949 175954949 G A RNF44 3'UTR 0.20 TCGA-IC-A6RE-01 5 31983269 31983269 C A PDZD2 Missense_Mutation p.A162D 0.19 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 5 34839360 34839360 C A TTC23L 5'UTR 0.21 TCGA-IC-A6RE-01 5 35910602 35910602 A C CAPSL Missense_Mutation p.F61V 0.08 tolerated(0.41) benign(0.012) TCGA-IC-A6RE-01 5 36051985 36051985 T A UGT3A2 Missense_Mutation p.T100S 0.16 tolerated(0.43) benign(0.016) TCGA-IC-A6RE-01 5 38510727 38510735 ACTTTTTCT CCTTTTCC LIFR Frame_Shift_Del p.V277Gfs*5 0.12 TCGA-IC-A6RE-01 5 50093060 50093060 T G PARP8 Missense_Mutation p.M523R 0.15 deleterious(0) probably_damaging(0.961) TCGA-IC-A6RE-01 5 60839555 60839555 C T ZSWIM6 Missense_Mutation p.A1020V 0.33 deleterious(0.03) probably_damaging(0.996) TCGA-IC-A6RE-01 5 6312630 6312630 C T CTD-2324F15.2 RNA 0.14 TCGA-IC-A6RE-01 5 644475 644475 T C CEP72 Missense_Mutation p.L534S 0.09 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 5 64447710 64447710 G C ADAMTS6 Missense_Mutation p.R1103G 0.16 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 5 68849595 68849595 A T OCLN 3'UTR 0.10 TCGA-IC-A6RE-01 5 74065074 74065074 A G NSA2 Missense_Mutation p.K76R 0.17 tolerated(0.12) possibly_damaging(0.787) TCGA-IC-A6RE-01 5 88016551 88016551 T G MEF2C 3'UTR 0.26 TCGA-IC-A6RE-01 5 89948262 89948262 T G GPR98 Silent p.T1172T 0.31 TCGA-IC-A6RE-01 5 96430719 96430719 A G LIX1 Silent p.S194S 0.19 TCGA-IC-A6RE-01 6 106556874 106556874 A C PRDM1 3'UTR 0.07 TCGA-IC-A6RE-01 6 107955088 107955088 C T SOBP Missense_Mutation p.T347M 0.27 deleterious(0) probably_damaging(0.997) TCGA-IC-A6RE-01 6 118786715 118786715 A C CEP85L Silent p.A760A 0.34 TCGA-IC-A6RE-01 6 126332443 126332443 A C TRMT11 Missense_Mutation p.N269H 0.13 deleterious(0) probably_damaging(0.984) TCGA-IC-A6RE-01 6 129475657 129475657 T G LAMA2 Missense_Mutation p.N345K 0.08 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RE-01 6 132618392 132618392 C A MOXD1 Missense_Mutation p.C581F 0.10 deleterious(0) probably_damaging(0.962) TCGA-IC-A6RE-01 6 133135743 133135743 G A RPS12 5'UTR 0.47 TCGA-IC-A6RE-01 6 136599656 136599656 A G BCLAF1 Silent p.S121S 0.20 TCGA-IC-A6RE-01 6 139561657 139561657 T G TXLNB 3'UTR 0.40 TCGA-IC-A6RE-01 6 158510932 158510932 C T SYNJ2 Missense_Mutation p.A1173V 0.10 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-IC-A6RE-01 6 158923470 158923470 G A TULP4 Silent p.L925L 0.42 TCGA-IC-A6RE-01 6 159660639 159660639 A C FNDC1 Missense_Mutation p.K1424T 0.07 deleterious(0) unknown(0) TCGA-IC-A6RE-01 6 163990138 163990138 T G QKI Intron 0.41 TCGA-IC-A6RE-01 6 163990189 163990189 T G QKI Intron 0.07 TCGA-IC-A6RE-01 6 163991126 163991126 T C QKI Intron 0.24 TCGA-IC-A6RE-01 6 170176094 170176094 G A ERMARD Missense_Mutation p.E485K 0.40 deleterious(0.05) possibly_damaging(0.606) TCGA-IC-A6RE-01 6 22287572 22287572 G A PRL 3'UTR 0.33 TCGA-IC-A6RE-01 6 24839446 24839446 T C FAM65B Missense_Mutation p.S659G 0.34 deleterious(0.03) possibly_damaging(0.752) TCGA-IC-A6RE-01 6 26273373 26273373 C G HIST1H2BI Missense_Mutation p.S57C 0.24 deleterious_low_confidence(0.04) probably_damaging(0.985) TCGA-IC-A6RE-01 6 28269577 28269577 C G PGBD1 Missense_Mutation p.T649R 0.06 deleterious(0) benign(0.444) TCGA-IC-A6RE-01 6 28540334 28540334 A C SCAND3 Missense_Mutation p.I1111S 0.10 tolerated(0.14) benign(0.147) TCGA-IC-A6RE-01 6 29080488 29080488 G A OR2J3 Missense_Mutation p.G274D 0.13 deleterious(0.03) benign(0.105) TCGA-IC-A6RE-01 6 32713088 32713088 A C HLA-DQA2 Missense_Mutation p.S79R 0.08 tolerated(0.2) benign(0.018) TCGA-IC-A6RE-01 6 41487171 41487171 C G RP11-328M4.3 RNA 0.13 TCGA-IC-A6RE-01 6 42237087 42237087 C G TRERF1 Missense_Mutation p.R81T 0.09 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-IC-A6RE-01 6 47199615 47199615 C A TNFRSF21 3'UTR 0.09 TCGA-IC-A6RE-01 6 49698876 49698876 T A CRISP3 Missense_Mutation p.T227S 0.09 deleterious(0.04) benign(0.01) TCGA-IC-A6RE-01 6 49986804 49986804 G A DEFB110 Silent p.D30D 0.44 TCGA-IC-A6RE-01 6 52271073 52271073 G A PAQR8 3'UTR 0.35 TCGA-IC-A6RE-01 6 56437847 56437847 T C DST Missense_Mutation p.I1795V 0.42 benign(0.101) TCGA-IC-A6RE-01 6 75858098 75858098 T C COL12A1 Silent p.P1421P 0.10 TCGA-IC-A6RE-01 6 7605703 7605703 G A SNRNP48 Missense_Mutation p.E264K 0.10 tolerated(0.17) benign(0.159) TCGA-IC-A6RE-01 6 99282803 99282803 C A POU3F2 Silent p.I18I 0.71 TCGA-IC-A6RE-01 7 100490202 100490202 G A ACHE Missense_Mutation p.H436Y 0.06 tolerated(1) possibly_damaging(0.593) TCGA-IC-A6RE-01 7 102147216 102147216 G A RASA4B Silent p.G118G 0.22 TCGA-IC-A6RE-01 7 102246379 102246379 G A RASA4 Silent p.G118G 0.16 TCGA-IC-A6RE-01 7 107696117 107696117 C G LAMB4 Missense_Mutation p.G1239R 0.22 tolerated(0.31) benign(0.1) TCGA-IC-A6RE-01 7 116422132 116422132 T C MET Silent p.L1223L 0.06 TCGA-IC-A6RE-01 7 117305556 117305556 G T CFTR Missense_Mutation p.D1394Y 0.16 deleterious(0.02) benign(0.243) TCGA-IC-A6RE-01 7 147675066 147675066 C T CNTNAP2 Missense_Mutation p.R790C 0.36 deleterious(0.02) possibly_damaging(0.836) TCGA-IC-A6RE-01 7 14797303 14797303 G A DGKB Missense_Mutation p.L42F 0.06 tolerated(0.08) possibly_damaging(0.836) TCGA-IC-A6RE-01 7 155301718 155301718 C T CNPY1 Silent p.K5K 0.52 TCGA-IC-A6RE-01 7 21892172 21892172 G C DNAH11 Missense_Mutation p.G3669R 0.05 benign(0.331) TCGA-IC-A6RE-01 7 23213926 23213926 T A KLHL7 3'UTR 0.09 TCGA-IC-A6RE-01 7 28860556 28860556 T G CREB5 3'UTR 0.43 TCGA-IC-A6RE-01 7 28865297 28865297 T G CREB5 3'UTR 0.11 TCGA-IC-A6RE-01 7 29606391 29606391 G A PRR15 3'UTR 0.06 TCGA-IC-A6RE-01 7 29980356 29980356 A G SCRN1 Silent p.S247S 0.04 TCGA-IC-A6RE-01 7 34994389 34994389 A C DPY19L1 Missense_Mutation p.V341G 0.08 deleterious(0) possibly_damaging(0.493) TCGA-IC-A6RE-01 7 36373542 36373542 C A KIAA0895 Missense_Mutation p.R410M 0.10 deleterious(0) possibly_damaging(0.722) TCGA-IC-A6RE-01 7 36455377 36455377 G A ANLN Missense_Mutation p.C469Y 0.26 deleterious(0.02) possibly_damaging(0.823) TCGA-IC-A6RE-01 7 37890011 37890011 A T NME8 Missense_Mutation p.E22V 0.32 deleterious(0.03) possibly_damaging(0.888) TCGA-IC-A6RE-01 7 44147429 44147429 A G AEBP1 Missense_Mutation p.K254R 0.07 deleterious_low_confidence(0.03) benign(0.004) TCGA-IC-A6RE-01 7 44156030 44156030 C T POLD2 Missense_Mutation p.S287N 0.30 deleterious(0.03) possibly_damaging(0.864) TCGA-IC-A6RE-01 7 45761661 45761661 T G ADCY1 3'UTR 0.17 TCGA-IC-A6RE-01 7 64168006 64168006 T G ZNF107 Missense_Mutation p.C442G 0.06 deleterious(0) probably_damaging(1) TCGA-IC-A6RE-01 7 64437292 64437292 T A ZNF117 3'UTR 0.14 TCGA-IC-A6RE-01 7 64452676 64452676 A C ERV3-1 Silent p.T243T 0.29 TCGA-IC-A6RE-01 7 81207855 81207855 T C AC010091.1 RNA 0.32 TCGA-IC-A6RE-01 7 82545247 82545247 T C PCLO Missense_Mutation p.S4019G 0.36 unknown(0) TCGA-IC-A6RE-01 7 82585562 82585562 A C PCLO Silent p.A1569A 0.29 TCGA-IC-A6RE-01 7 87280172 87280172 T C RUNDC3B Missense_Mutation p.F53L 0.23 tolerated(0.65) benign(0.008) TCGA-IC-A6RE-01 7 88964359 88964359 T C ZNF804B Missense_Mutation p.V688A 0.36 tolerated(0.52) benign(0.004) TCGA-IC-A6RE-01 7 91842564 91842564 G A KRIT1 Missense_Mutation p.P657L 0.05 tolerated(0.19) benign(0.021) TCGA-IC-A6RE-01 7 92764515 92764515 T G SAMD9L Missense_Mutation p.K257T 0.04 deleterious(0.04) possibly_damaging(0.584) TCGA-IC-A6RE-01 7 98258681 98258681 C G NPTX2 3'UTR 0.09 TCGA-IC-A6RE-01 7 99778291 99778291 G A STAG3 Missense_Mutation p.E38K 0.04 tolerated_low_confidence(0.17) benign(0.002) TCGA-IC-A6RE-01 7 99795409 99795409 A G STAG3 Silent p.E358E 0.05 TCGA-IC-A6RE-01 7 99955814 99955814 C T PILRB Intron 0.04 TCGA-IC-A6RE-01 8 105361786 105361786 G A DCSTAMP Missense_Mutation p.V336I 0.11 tolerated(0.46) possibly_damaging(0.588) TCGA-IC-A6RE-01 8 105509676 105509676 A C LRP12 Silent p.T368T 0.66 TCGA-IC-A6RE-01 8 106814840 106814840 A G ZFPM2 Missense_Mutation p.T844A 0.65 tolerated(0.64) benign(0) TCGA-IC-A6RE-01 8 109094778 109094778 T C RSPO2 Missense_Mutation p.K30R 0.08 tolerated(0.67) benign(0.003) TCGA-IC-A6RE-01 8 114448977 114448977 T G CSMD3 Missense_Mutation p.K36T 0.14 deleterious_low_confidence(0.02) benign(0) TCGA-IC-A6RE-01 8 116424490 116424490 T C TRPS1 3'UTR 0.71 TCGA-IC-A6RE-01 8 116426736 116426736 C T TRPS1 Missense_Mutation p.V1134I 0.58 tolerated_low_confidence(0.11) benign(0.014) TCGA-IC-A6RE-01 8 121301870 121301870 T G COL14A1 Silent p.T1367T 0.06 TCGA-IC-A6RE-01 8 124333404 124333404 T C ATAD2 Silent p.Q1381Q 0.08 TCGA-IC-A6RE-01 8 125989136 125989136 C A ZNF572 Missense_Mutation p.T209N 0.22 deleterious(0.04) probably_damaging(0.958) TCGA-IC-A6RE-01 8 133192504 133192504 A G KCNQ3 Missense_Mutation p.L226P 0.11 deleterious(0) probably_damaging(0.997) TCGA-IC-A6RE-01 8 134050624 134050624 C G SLA 3'UTR 0.13 TCGA-IC-A6RE-01 8 142222452 142222452 G C SLC45A4 Missense_Mutation p.I664M 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-IC-A6RE-01 8 144399936 144399936 G A TOP1MT Silent p.N429N 0.64 TCGA-IC-A6RE-01 8 144654593 144654593 G A MROH6 Nonsense_Mutation p.Q98* 0.56 TCGA-IC-A6RE-01 8 144942164 144942164 C T EPPK1 Missense_Mutation p.G1753D 0.10 probably_damaging(0.997) TCGA-IC-A6RE-01 8 145059731 145059731 C T PARP10 Silent p.A174A 0.12 TCGA-IC-A6RE-01 8 145139755 145139755 T C GPAA1 Silent p.L381L 0.38 TCGA-IC-A6RE-01 8 18387095 18387095 C G PSD3 3'UTR 0.12 TCGA-IC-A6RE-01 8 19362935 19362935 G T CSGALNACT1 Silent p.V137V 0.70 TCGA-IC-A6RE-01 8 39362957 39362957 C T ADAM3A Intron 0.16 TCGA-IC-A6RE-01 8 42207570 42207570 G A POLB Missense_Mutation p.V103I 0.35 tolerated(0.51) benign(0.154) TCGA-IC-A6RE-01 8 48882478 48882478 T G MCM4 Missense_Mutation p.L432R 0.11 tolerated(0.62) benign(0.001) TCGA-IC-A6RE-01 8 53570013 53570013 A C RB1CC1 Silent p.T792T 0.43 TCGA-IC-A6RE-01 8 68993022 68993022 C T PREX2 Silent p.D609D 0.29 TCGA-IC-A6RE-01 8 69243593 69243593 G A RP11-664D7.4 Missense_Mutation p.L44F 0.06 possibly_damaging(0.773) TCGA-IC-A6RE-01 8 72234487 72234487 A G EYA1 Silent p.S73S 0.66 TCGA-IC-A6RE-01 8 72964920 72964920 G C TRPA1 Silent p.V575V 0.24 TCGA-IC-A6RE-01 8 74209587 74209587 T C RDH10 Missense_Mutation p.S150P 0.10 deleterious(0.01) probably_damaging(0.94) TCGA-IC-A6RE-01 8 89053107 89053107 G T MMP16 3'UTR 0.13 TCGA-IC-A6RE-01 8 9760910 9760910 T G LINC00599 5'Flank 0.18 TCGA-IC-A6RE-01 8 99205159 99205159 A T NIPAL2 3'UTR 0.11 TCGA-IC-A6RE-01 9 100234625 100234625 T C TDRD7 Silent p.L598L 0.21 TCGA-IC-A6RE-01 9 102627985 102627986 - A NR4A3 3'UTR 0.15 TCGA-IC-A6RE-01 9 104314938 104314938 A T RNF20 Nonsense_Mutation p.K602* 0.18 TCGA-IC-A6RE-01 9 111625588 111625588 A T ACTL7A Missense_Mutation p.K329M 0.10 deleterious(0) probably_damaging(0.913) TCGA-IC-A6RE-01 9 112932498 112932498 A C PALM2-AKAP2 3'UTR 0.07 TCGA-IC-A6RE-01 9 114090461 114090461 A C OR2K2 Missense_Mutation p.L85V 0.19 deleterious(0.04) benign(0.008) TCGA-IC-A6RE-01 9 117104335 117104335 T A AKNA Missense_Mutation p.Q1276H 0.12 tolerated(0.15) benign(0.002) TCGA-IC-A6RE-01 9 130213659 130213659 G C RPL12 5'UTR 0.13 TCGA-IC-A6RE-01 9 131455203 131455203 G C SET Silent p.L158L 0.15 TCGA-IC-A6RE-01 9 131709253 131709253 A G DOLK Silent p.F110F 0.15 TCGA-IC-A6RE-01 9 131709261 131709261 C G DOLK Missense_Mutation p.E108Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-IC-A6RE-01 9 13219624 13219624 T G MPDZ Missense_Mutation p.E340D 0.38 tolerated(0.27) possibly_damaging(0.899) TCGA-IC-A6RE-01 9 135204547 135204547 T C SETX Missense_Mutation p.E813G 0.54 tolerated_low_confidence(0.16) benign(0.009) TCGA-IC-A6RE-01 9 136662837 136662837 C T VAV2 Missense_Mutation p.V311I 0.30 tolerated(0.16) benign(0.305) TCGA-IC-A6RE-01 9 138011558 138011558 T A OLFM1 Missense_Mutation p.L313H 0.24 tolerated(0.1) probably_damaging(0.98) TCGA-IC-A6RE-01 9 140006360 140006360 C T DPP7 Missense_Mutation p.R391Q 0.12 deleterious(0.04) probably_damaging(0.982) TCGA-IC-A6RE-01 9 14082704 14082704 C A NFIB 3'Flank 0.20 TCGA-IC-A6RE-01 9 16410564 16410564 C A BNC2 3'UTR 0.22 TCGA-IC-A6RE-01 9 17309171 17309171 A C CNTLN Missense_Mutation p.K421T 0.21 tolerated(0.07) possibly_damaging(0.549) TCGA-IC-A6RE-01 9 23691150 23691150 A C ELAVL2 3'UTR 0.09 TCGA-IC-A6RE-01 9 32786815 32786815 T G TMEM215 3'UTR 0.07 TCGA-IC-A6RE-01 9 33676558 33676558 T C PTENP1 RNA 0.11 TCGA-IC-A6RE-01 9 34311339 34311339 T A KIF24 Silent p.A2A 0.09 TCGA-IC-A6RE-01 9 40702808 40702808 G A SPATA31A3 Silent p.P155P 0.11 TCGA-IC-A6RE-01 9 77300974 77300974 T C RORB 3'UTR 0.25 TCGA-IC-A6RE-01 9 79119338 79119338 T A GCNT1 3'UTR 0.20 TCGA-IC-A6RE-01 9 84532403 84532403 C G SPATA31D5P RNA 0.14 TCGA-IC-A6RE-01 9 84532438 84532438 A G SPATA31D5P RNA 0.11 TCGA-IC-A6RE-01 9 8492870 8492870 G A PTPRD Missense_Mutation p.T820I 0.19 tolerated(0.11) benign(0.296) TCGA-IC-A6RE-01 9 8518303 8518303 G C PTPRD Missense_Mutation p.S363C 0.47 deleterious(0.01) probably_damaging(0.989) TCGA-IC-A6RE-01 9 86617740 86617740 G A RMI1 Missense_Mutation p.M613I 0.08 tolerated(1) benign(0.001) TCGA-IC-A6RE-01 X 10096087 10096087 G C WWC3 Missense_Mutation p.W722C 0.22 deleterious(0.01) probably_damaging(1) TCGA-IC-A6RE-01 X 109697820 109697820 G T RGAG1 Silent p.L1325L 0.76 TCGA-IC-A6RE-01 X 111700401 111700401 G C ZCCHC16 3'UTR 0.18 TCGA-IC-A6RE-01 X 11316830 11316830 G A AMELX Missense_Mutation p.V117I 0.75 tolerated(0.28) unknown(0) TCGA-IC-A6RE-01 X 122623438 122623438 T G GRIA3 3'UTR 0.18 TCGA-IC-A6RE-01 X 122734687 122734687 A G THOC2 3'UTR 0.19 TCGA-IC-A6RE-01 X 123657383 123657383 C G TENM1 Missense_Mutation p.W955S 0.43 deleterious(0) probably_damaging(0.944) TCGA-IC-A6RE-01 X 130218356 130218356 T A ARHGAP36 Silent p.A241A 0.53 TCGA-IC-A6RE-01 X 130417080 130417080 T G IGSF1 Missense_Mutation p.K276Q 0.67 tolerated(0.34) benign(0.419) TCGA-IC-A6RE-01 X 149013830 149013830 C T MAGEA8 Missense_Mutation p.R262C 0.43 deleterious(0.05) possibly_damaging(0.876) TCGA-IC-A6RE-01 X 151092794 151092794 G C MAGEA4 Missense_Mutation p.E220Q 0.25 deleterious(0.02) possibly_damaging(0.799) TCGA-IC-A6RE-01 X 151870566 151870566 G C MAGEA6 3'UTR 0.08 TCGA-IC-A6RE-01 X 153296571 153296571 C A MECP2 Silent p.G248G 0.22 TCGA-IC-A6RE-01 X 31138365 31138365 T G DMD 3'UTR 0.20 TCGA-IC-A6RE-01 X 32328222 32328222 A C DMD Missense_Mutation p.F2032V 0.29 possibly_damaging(0.504) TCGA-IC-A6RE-01 X 40523690 40523690 G A MED14 Missense_Mutation p.A1106V 0.43 tolerated(0.11) benign(0.001) TCGA-IC-A6RE-01 X 41555683 41555683 G A GPR34 Missense_Mutation p.R266H 0.71 deleterious(0.01) probably_damaging(0.985) TCGA-IC-A6RE-01 X 47498581 47498581 G A ELK1 Missense_Mutation p.P123S 0.11 tolerated(0.23) benign(0.005) TCGA-IC-A6RE-01 X 48652484 48652484 C G GATA1 Silent p.P385P 0.12 TCGA-IC-A6RE-01 X 48760385 48760385 G T PQBP1 3'UTR 0.81 TCGA-IC-A6RE-01 X 49088266 49088266 C T CACNA1F Missense_Mutation p.R50Q 0.35 deleterious(0) benign(0.081) TCGA-IC-A6RE-01 X 55103876 55103876 A G PAGE2B Missense_Mutation p.I80V 0.06 tolerated(0.12) benign(0.028) TCGA-IC-A6RE-01 X 69902540 69902540 A C TEX11 Missense_Mutation p.I395M 0.12 deleterious(0) probably_damaging(0.991) TCGA-IC-A6RE-01 X 72298057 72298057 G C PABPC1L2A 3'UTR 0.10 TCGA-IC-A6RE-01 X 76776325 76776325 C T ATRX Missense_Mutation p.E2381K 0.19 probably_damaging(0.989) TCGA-IC-A6RE-01 X 79286419 79286419 T C TBX22 Missense_Mutation p.S458P 0.56 tolerated(1) benign(0.001) TCGA-IC-A6RE-01 X 99891563 99891563 G - TSPAN6 Intron 0.16 TCGA-IC-A6RE-01 Y 23557170 23557170 A T RBMY2EP RNA 0.53 TCGA-IC-A6RF-01 10 100020863 100020863 G T LOXL4 Silent p.R160R 0.17 TCGA-IC-A6RF-01 10 108923969 108923969 C T SORCS1 Missense_Mutation p.G106S 0.17 tolerated_low_confidence(0.21) benign(0.009) TCGA-IC-A6RF-01 10 50818987 50818987 C T SLC18A3 Silent p.G67G 0.38 TCGA-IC-A6RF-01 10 73553088 73553088 G A CDH23 5'Flank 0.14 TCGA-IC-A6RF-01 10 75435611 75435611 C T AGAP5 Silent p.P269P 0.39 TCGA-IC-A6RF-01 10 88743656 88743656 G T RP11-96C23.5 RNA 0.17 TCGA-IC-A6RF-01 10 98985868 98985868 C T ARHGAP19 3'UTR 0.27 TCGA-IC-A6RF-01 10 99211481 99211481 C T ZDHHC16 Missense_Mutation p.R17C 0.38 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-IC-A6RF-01 11 104872776 104872776 G A CASP5 Silent p.D245D 0.21 TCGA-IC-A6RF-01 11 106558335 106558335 C T GUCY1A2 Silent p.S744S 0.34 TCGA-IC-A6RF-01 11 1265962 1265962 G T MUC5B Missense_Mutation p.A2618S 0.34 unknown(0) TCGA-IC-A6RF-01 11 46515719 46515719 C T AMBRA1 Missense_Mutation p.R702H 0.21 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IC-A6RF-01 11 46625423 46625423 G T HARBI1 Missense_Mutation p.T236N 0.15 deleterious(0) possibly_damaging(0.691) TCGA-IC-A6RF-01 11 58714634 58714634 T C GLYATL1 Intron 0.29 TCGA-IC-A6RF-01 11 5878582 5878582 C T OR52E8 Silent p.E117E 0.23 TCGA-IC-A6RF-01 12 129189834 129189834 C T TMEM132C Missense_Mutation p.T774M 0.31 tolerated(0.52) benign(0.016) TCGA-IC-A6RF-01 12 21196409 21196409 G A SLCO1B7 Missense_Mutation p.R243K 0.29 tolerated(0.35) benign(0.012) TCGA-IC-A6RF-01 12 31451060 31451060 G T FAM60A Silent p.R27R 0.26 TCGA-IC-A6RF-01 12 43925975 43925975 G A ADAMTS20 Silent p.N159N 0.27 TCGA-IC-A6RF-01 12 50036107 50036107 G T PRPF40B Missense_Mutation p.M658I 0.19 tolerated(0.08) possibly_damaging(0.537) TCGA-IC-A6RF-01 12 50036108 50036108 C T PRPF40B Silent p.L659L 0.19 TCGA-IC-A6RF-01 12 5154047 5154047 G C KCNA5 Missense_Mutation p.S245T 0.27 tolerated(0.05) benign(0.02) TCGA-IC-A6RF-01 12 52757081 52757081 G A KRT85 Silent p.D300D 0.38 TCGA-IC-A6RF-01 12 56351229 56351229 G C PMEL Silent p.V286V 0.19 TCGA-IC-A6RF-01 12 62147482 62147485 AGAC - FAM19A2 Frame_Shift_Del p.C101* 0.31 TCGA-IC-A6RF-01 12 92537649 92537649 G T BTG1 3'UTR 0.30 TCGA-IC-A6RF-01 13 27216440 27216440 G A WASF3 Silent p.R11R 0.30 TCGA-IC-A6RF-01 13 37270986 37270986 G A SERTM1 3'UTR 0.37 TCGA-IC-A6RF-01 13 50273971 50273971 G A KPNA3 3'UTR 0.31 TCGA-IC-A6RF-01 13 50594677 50594677 C T KCNRG 3'UTR 0.39 TCGA-IC-A6RF-01 13 70681620 70681620 T A KLHL1 Missense_Mutation p.K71M 0.28 deleterious_low_confidence(0.01) benign(0.129) TCGA-IC-A6RF-01 14 100603921 100603921 G T EVL Missense_Mutation p.G324V 0.28 tolerated(0.27) possibly_damaging(0.508) TCGA-IC-A6RF-01 14 21167735 21167735 C T RNASE4 Missense_Mutation p.R69C 0.17 deleterious(0.02) possibly_damaging(0.8) TCGA-IC-A6RF-01 14 22102857 22102857 G A OR10G2 Missense_Mutation p.L48F 0.29 deleterious(0.03) benign(0.033) TCGA-IC-A6RF-01 14 51722608 51722608 T G TMX1 3'UTR 0.31 TCGA-IC-A6RF-01 14 88945961 88945961 G A PTPN21 Missense_Mutation p.T605M 0.38 tolerated(0.1) benign(0.223) TCGA-IC-A6RF-01 14 89044335 89044335 A C ZC3H14 Missense_Mutation p.Q377P 0.32 tolerated(0.08) benign(0.026) TCGA-IC-A6RF-01 15 34648679 34648679 G A NUTM1 Missense_Mutation p.A796T 0.32 tolerated(0.21) benign(0.01) TCGA-IC-A6RF-01 15 74181427 74181427 G A TBC1D21 Silent p.K332K 0.29 TCGA-IC-A6RF-01 16 1291206 1291206 C G TPSAB1 Silent p.P38P 0.17 TCGA-IC-A6RF-01 16 49670652 49670652 C T ZNF423 Missense_Mutation p.S804N 0.32 deleterious(0.02) possibly_damaging(0.874) TCGA-IC-A6RF-01 16 71961715 71961715 A T IST1 Nonstop_Mutation p.*380Lext*3 0.12 TCGA-IC-A6RF-01 17 37219725 37219728 AGCA - PLXDC1 3'UTR 0.22 TCGA-IC-A6RF-01 17 41623057 41623057 G A ETV4 Intron 0.18 TCGA-IC-A6RF-01 17 48191301 48191301 C T SAMD14 Missense_Mutation p.G390E 0.35 deleterious(0) probably_damaging(1) TCGA-IC-A6RF-01 17 51900977 51900977 C T KIF2B Missense_Mutation p.R195C 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-IC-A6RF-01 17 61670951 61670951 T C DCAF7 3'Flank 0.19 TCGA-IC-A6RF-01 17 70118877 70118924 AGAAGCGGCCCTTCGTGGAGGAGGCGGAGCGGCTGCGCGTGCAGCACA - SOX9 In_Frame_Del p.R152_K167del 0.25 TCGA-IC-A6RF-01 17 7365001 7365001 G A ZBTB4 3'UTR 0.26 TCGA-IC-A6RF-01 17 78350691 78350691 C A RNF213 Missense_Mutation p.L4480I 0.20 probably_damaging(0.997) TCGA-IC-A6RF-01 18 63511205 63511205 C T CDH7 Missense_Mutation p.P380L 0.23 tolerated(0.1) benign(0.001) TCGA-IC-A6RF-01 19 11144146 11144146 C T SMARCA4 Missense_Mutation p.R1243W 0.32 possibly_damaging(0.893) TCGA-IC-A6RF-01 19 11889180 11889180 C A ZNF441 Missense_Mutation p.Q56K 0.30 tolerated(0.13) benign(0) TCGA-IC-A6RF-01 19 2252589 2252589 C T JSRP1 Silent p.P245P 0.31 TCGA-IC-A6RF-01 19 38383490 38383490 G A WDR87 Silent p.Y912Y 0.29 TCGA-IC-A6RF-01 19 39330958 39330959 - G HNRNPL Frame_Shift_Ins p.P338Tfs*56 0.25 TCGA-IC-A6RF-01 19 4033481 4033481 G A PIAS4 Missense_Mutation p.D349N 0.18 deleterious(0) probably_damaging(1) TCGA-IC-A6RF-01 19 4324041 4324041 C T STAP2 3'UTR 0.14 TCGA-IC-A6RF-01 19 55019195 55019195 G T LAIR2 Missense_Mutation p.G54W 0.35 tolerated(0.11) possibly_damaging(0.829) TCGA-IC-A6RF-01 19 55870036 55870036 T C FAM71E2 Missense_Mutation p.M734V 0.24 tolerated(1) benign(0) TCGA-IC-A6RF-01 19 56133379 56133379 G A ZNF784 Missense_Mutation p.S237L 0.24 deleterious(0) probably_damaging(0.978) TCGA-IC-A6RF-01 19 56329311 56329311 C T NLRP11 Missense_Mutation p.R77H 0.36 tolerated(0.2) benign(0.008) TCGA-IC-A6RF-01 1 12628310 12628310 T A DHRS3 3'UTR 0.20 TCGA-IC-A6RF-01 1 150621108 150621108 A T GOLPH3L Missense_Mutation p.F183I 0.22 deleterious(0) probably_damaging(0.997) TCGA-IC-A6RF-01 1 155936636 155936636 G A ARHGEF2 Missense_Mutation p.A84V 0.24 tolerated(0.2) possibly_damaging(0.676) TCGA-IC-A6RF-01 1 156377214 156377214 C A C1orf61 Intron 0.36 TCGA-IC-A6RF-01 1 156646344 156646344 C T NES Missense_Mutation p.R238H 0.32 deleterious(0.02) benign(0.21) TCGA-IC-A6RF-01 1 158986377 158986377 G C IFI16 Missense_Mutation p.E146Q 0.10 tolerated(1) benign(0.013) TCGA-IC-A6RF-01 1 166823466 166823466 G A POGK 3'UTR 0.39 TCGA-IC-A6RF-01 1 169586496 169586496 G A SELP Missense_Mutation p.P84L 0.25 deleterious(0) probably_damaging(1) TCGA-IC-A6RF-01 1 176659352 176659352 G T PAPPA2 Silent p.L739L 0.28 TCGA-IC-A6RF-01 1 179323153 179323153 C G SOAT1 3'UTR 0.29 TCGA-IC-A6RF-01 1 183094558 183094558 A T LAMC1 Missense_Mutation p.M892L 0.32 tolerated(0.26) benign(0.001) TCGA-IC-A6RF-01 1 183920226 183920226 G A COLGALT2 Missense_Mutation p.R351C 0.22 deleterious(0) probably_damaging(0.988) TCGA-IC-A6RF-01 1 202932829 202932829 G A CYB5R1 Missense_Mutation p.R196W 0.29 deleterious(0) possibly_damaging(0.832) TCGA-IC-A6RF-01 1 21804677 21804677 T C NBPF3 Missense_Mutation p.S345P 0.22 tolerated(0.08) possibly_damaging(0.887) TCGA-IC-A6RF-01 1 220791832 220791832 G A MARK1 Missense_Mutation p.V245I 0.24 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RF-01 1 232534582 232534582 G T SIPA1L2 3'UTR 0.31 TCGA-IC-A6RF-01 1 247464284 247464284 G A ZNF496 Missense_Mutation p.P434L 0.27 tolerated(0.07) benign(0.04) TCGA-IC-A6RF-01 1 247769044 247769044 C A OR2G3 Missense_Mutation p.P53T 0.09 tolerated(0.07) benign(0.097) TCGA-IC-A6RF-01 1 248039251 248039251 C T TRIM58 Silent p.T307T 0.20 TCGA-IC-A6RF-01 1 27687875 27687875 G A MAP3K6 Silent p.S566S 0.34 TCGA-IC-A6RF-01 1 34123643 34123643 C G CSMD2 Missense_Mutation p.Q1410H 0.11 deleterious(0) probably_damaging(0.979) TCGA-IC-A6RF-01 1 35579635 35579635 A G ZMYM1 Missense_Mutation p.K735R 0.24 deleterious(0.02) probably_damaging(0.997) TCGA-IC-A6RF-01 1 41285870 41285870 C A KCNQ4 Missense_Mutation p.Q327K 0.29 deleterious(0) probably_damaging(0.993) TCGA-IC-A6RF-01 1 91487584 91487584 G C ZNF644 5'Flank 0.28 TCGA-IC-A6RF-01 20 37144981 37144981 G A RALGAPB Missense_Mutation p.R340H 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-IC-A6RF-01 20 49218951 49218951 G A FAM65C Silent p.H435H 0.25 TCGA-IC-A6RF-01 20 57428501 57428501 G A GNAS Missense_Mutation p.V61I 0.24 tolerated_low_confidence(1) unknown(0) TCGA-IC-A6RF-01 22 29534726 29534726 A G KREMEN1 Missense_Mutation p.Y360C 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IC-A6RF-01 22 47064010 47064010 C T GRAMD4 Silent p.D292D 0.12 TCGA-IC-A6RF-01 2 111542371 111542371 G A ACOXL Silent p.A46A 0.40 TCGA-IC-A6RF-01 2 113306968 113306968 C A POLR1B Missense_Mutation p.T206N 0.26 deleterious(0) probably_damaging(0.978) TCGA-IC-A6RF-01 2 130832231 130832231 C A POTEF Missense_Mutation p.K938N 0.23 deleterious_low_confidence(0.03) probably_damaging(0.941) TCGA-IC-A6RF-01 2 136873722 136873722 G - CXCR4 5'UTR 0.19 TCGA-IC-A6RF-01 2 138435209 138435209 C T THSD7B 3'UTR 0.41 TCGA-IC-A6RF-01 2 145157786 145157786 C G ZEB2 Missense_Mutation p.G323A 0.08 deleterious(0) probably_damaging(0.996) TCGA-IC-A6RF-01 2 161130757 161130757 C T RBMS1 3'UTR 0.23 TCGA-IC-A6RF-01 2 162751223 162751223 G A SLC4A10 Missense_Mutation p.R410H 0.43 deleterious(0) probably_damaging(0.999) TCGA-IC-A6RF-01 2 176995625 176995634 TCAGAGCTCG - HOXD8 Frame_Shift_Del p.Q178Lfs*9 0.24 TCGA-IC-A6RF-01 2 179412140 179412140 G C TTN Missense_Mutation p.P31405A 0.33 TCGA-IC-A6RF-01 2 179647087 179647087 C T TTN Missense_Mutation p.E1078K 0.54 TCGA-IC-A6RF-01 2 202137430 202137431 AA - CASP8 Frame_Shift_Del p.R221Sfs*17 0.31 TCGA-IC-A6RF-01 2 207012367 207012367 C T NDUFS1 Missense_Mutation p.G161R 0.06 deleterious(0) probably_damaging(1) TCGA-IC-A6RF-01 2 242149770 242149770 G T ANO7 Missense_Mutation p.V528L 0.48 tolerated(1) benign(0.023) TCGA-IC-A6RF-01 2 242192401 242192401 C G HDLBP Missense_Mutation p.R448T 0.11 deleterious(0.01) possibly_damaging(0.742) TCGA-IC-A6RF-01 2 27477974 27477974 G A SLC30A3 3'UTR 0.08 TCGA-IC-A6RF-01 2 29287441 29287441 C T C2orf71 3'UTR 0.44 TCGA-IC-A6RF-01 2 33359997 33359997 G A LTBP1 Missense_Mutation p.D391N 0.33 deleterious(0) probably_damaging(0.922) TCGA-IC-A6RF-01 2 48825512 48825512 G A STON1 3'UTR 0.14 TCGA-IC-A6RF-01 2 56420423 56420423 A T CCDC85A Missense_Mutation p.K363I 0.19 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-IC-A6RF-01 2 71211838 71211838 G A ANKRD53 Missense_Mutation p.R334Q 0.18 tolerated(0.7) benign(0.007) TCGA-IC-A6RF-01 2 97507832 97507833 TG - ANKRD23 Frame_Shift_Del p.H88Qfs*8 0.21 TCGA-IC-A6RF-01 3 118619857 118619857 G C IGSF11 3'UTR 0.11 TCGA-IC-A6RF-01 3 125695707 125695707 T C ROPN1B Intron 0.21 TCGA-IC-A6RF-01 3 147131194 147131194 C T ZIC1 Silent p.G400G 0.32 TCGA-IC-A6RF-01 3 183907232 183907232 G A ABCF3 Splice_Site p.X371_splice 0.18 TCGA-IC-A6RF-01 3 192125875 192125875 G A FGF12 Silent p.L46L 0.17 TCGA-IC-A6RF-01 3 195791279 195791279 C A TFRC Missense_Mutation p.A407S 0.12 deleterious(0.01) probably_damaging(0.972) TCGA-IC-A6RF-01 3 47155365 47155365 C G SETD2 Splice_Site p.X1572_splice 0.38 TCGA-IC-A6RF-01 3 47454574 47454574 A C PTPN23 Missense_Mutation p.N1604H 0.21 unknown(0) TCGA-IC-A6RF-01 3 48675255 48675255 G A CELSR3 3'UTR 0.16 TCGA-IC-A6RF-01 3 50296411 50296411 C A GNAI2 3'UTR 0.28 TCGA-IC-A6RF-01 3 5241344 5241344 A C EDEM1 Missense_Mutation p.K217T 0.33 tolerated(0.36) benign(0.053) TCGA-IC-A6RF-01 4 103183396 103183396 C T SLC39A8 3'UTR 0.16 TCGA-IC-A6RF-01 4 123333900 123333900 T C ADAD1 Silent p.L395L 0.22 TCGA-IC-A6RF-01 4 44449989 44449989 G T KCTD8 Silent p.A184A 0.41 TCGA-IC-A6RF-01 4 70812006 70812006 C A CSN1S1 3'UTR 0.23 TCGA-IC-A6RF-01 5 137895634 137895634 C T HSPA9 Silent p.L443L 0.26 TCGA-IC-A6RF-01 5 149357798 149357798 G T SLC26A2 Nonsense_Mutation p.G195* 0.24 TCGA-IC-A6RF-01 5 150411870 150411870 G A TNIP1 Silent p.P618P 0.26 TCGA-IC-A6RF-01 5 176678794 176678794 G T NSD1 Nonsense_Mutation p.E1569* 0.30 TCGA-IC-A6RF-01 5 176709523 176709523 C T NSD1 Nonsense_Mutation p.R1984* 0.24 TCGA-IC-A6RF-01 5 19747230 19747230 C A CDH18 Missense_Mutation p.S115I 0.28 deleterious(0.01) probably_damaging(0.998) TCGA-IC-A6RF-01 5 38945021 38945021 A G RICTOR Silent p.L1595L 0.19 TCGA-IC-A6RF-01 5 488464 488464 G A SLC9A3 Silent p.F214F 0.31 TCGA-IC-A6RF-01 5 88057050 88057050 C T MEF2C Intron 0.33 TCGA-IC-A6RF-01 5 90106558 90106558 C A GPR98 Missense_Mutation p.L5161I 0.20 benign(0.001) TCGA-IC-A6RF-01 5 9224886 9224886 A G SEMA5A Silent p.A182A 0.24 TCGA-IC-A6RF-01 6 26033431 26033432 - T HIST1H2AB Frame_Shift_Ins p.S123Efs*4 0.23 TCGA-IC-A6RF-01 6 26124548 26124548 C T HIST1H2AC Nonsense_Mutation p.R30* 0.23 TCGA-IC-A6RF-01 6 32116781 32116781 G A PRRT1 3'UTR 0.23 TCGA-IC-A6RF-01 6 32117443 32117443 C T PRRT1 Silent p.P205P 0.25 TCGA-IC-A6RF-01 6 74497121 74497121 C T CD109 Silent p.V834V 0.25 TCGA-IC-A6RF-01 6 75860877 75860877 C G COL12A1 Missense_Mutation p.C1376S 0.23 probably_damaging(0.992) TCGA-IC-A6RF-01 6 84233206 84233206 A G PRSS35 Missense_Mutation p.T16A 0.22 tolerated(0.64) benign(0.002) TCGA-IC-A6RF-01 7 129986353 129986353 G A CPA5 Silent p.T9T 0.33 TCGA-IC-A6RF-01 7 150762016 150762016 G A SLC4A2 Missense_Mutation p.E181K 0.07 tolerated(0.56) benign(0.099) TCGA-IC-A6RF-01 7 23221664 23221664 G C NUPL2 5'UTR 0.19 TCGA-IC-A6RF-01 7 27284773 27284773 C T EVX1 Silent p.S178S 0.34 TCGA-IC-A6RF-01 7 34014313 34014313 G T BMPER Splice_Site p.X165_splice 0.35 TCGA-IC-A6RF-01 7 37947216 37947216 C A SFRP4 Missense_Mutation p.K302N 0.26 tolerated(0.88) benign(0) TCGA-IC-A6RF-01 7 92762703 92762703 A G SAMD9L Missense_Mutation p.L861P 0.35 deleterious(0) probably_damaging(0.998) TCGA-IC-A6RF-01 8 1953965 1953965 C G KBTBD11 3'UTR 0.22 TCGA-IC-A6RF-01 8 35624506 35624506 C A UNC5D Silent p.T800T 0.32 TCGA-IC-A6RF-01 9 18680353 18680353 G A ADAMTSL1 Missense_Mutation p.G394R 0.32 deleterious(0) probably_damaging(0.997) TCGA-IC-A6RF-01 9 36147790 36147790 A T GLIPR2 Missense_Mutation p.K7N 0.32 deleterious(0.02) possibly_damaging(0.704) TCGA-IC-A6RF-01 9 78925663 78925663 G A PCSK5 Silent p.E1233E 0.31 TCGA-IC-A6RF-01 9 79972696 79972696 T G VPS13A Missense_Mutation p.V2632G 0.23 deleterious(0) probably_damaging(0.924) TCGA-IC-A6RF-01 9 94489026 94489026 C T ROR2 Splice_Site p.X395_splice 0.29 TCGA-IC-A6RF-01 X 112048235 112048235 G T AMOT Silent p.I572I 0.29 TCGA-IC-A6RF-01 X 12842064 12842064 G C PRPS2 3'Flank 0.34 TCGA-IC-A6RF-01 X 134185702 134185702 G A FAM127B 3'UTR 0.33 TCGA-IC-A6RF-01 X 144337320 144337320 A T SPANXN1 Missense_Mutation p.N69Y 0.28 deleterious(0.04) benign(0.295) TCGA-IC-A6RF-01 X 17879397 17879397 G A RAI2 5'UTR 0.17 TCGA-IC-A6RF-01 X 2778088 2778088 C T GYG2 Silent p.R304R 0.27 TCGA-IC-A6RF-01 X 29417387 29417387 G T IL1RAPL1 Missense_Mutation p.G222V 0.23 deleterious(0.04) benign(0.018) TCGA-IC-A6RF-01 X 54578109 54578109 C T GNL3L Silent p.H324H 0.36 TCGA-IC-A6RF-01 X 55515327 55515327 G C USP51 Missense_Mutation p.R16G 0.29 tolerated_low_confidence(0.42) unknown(0) TCGA-IC-A6RF-01 X 64738220 64738220 A G LAS1L Missense_Mutation p.I525T 0.21 tolerated(0.3) benign(0.007) TCGA-IC-A6RF-01 X 70462090 70462090 G T ZMYM3 Silent p.T1244T 0.33 TCGA-IC-A6RF-01 X 70617240 70617240 C T TAF1 Missense_Mutation p.R1202C 0.26 deleterious(0) possibly_damaging(0.821) TCGA-IC-A6RF-01 X 8500957 8500957 C T KAL1 3'UTR 0.29 TCGA-IG-A3I8-01 10 21108359 21108359 C T NEBL Silent p.L683L 0.31 TCGA-IG-A3I8-01 10 30317782 30317782 C T KIAA1462 Missense_Mutation p.R432Q 0.08 deleterious(0) probably_damaging(1) TCGA-IG-A3I8-01 10 61829891 61829891 G A ANK3 Missense_Mutation p.T3583M 0.45 probably_damaging(0.991) TCGA-IG-A3I8-01 10 64415306 64415306 C T ZNF365 Intron 0.30 TCGA-IG-A3I8-01 10 69571381 69571381 C T DNAJC12 Silent p.L66L 0.47 TCGA-IG-A3I8-01 11 102826188 102826188 A T MMP13 Missense_Mutation p.L52H 0.06 tolerated(0.13) benign(0.023) TCGA-IG-A3I8-01 11 10650303 10650303 G A MRVI1 Missense_Mutation p.P216L 0.19 tolerated(0.07) benign(0.013) TCGA-IG-A3I8-01 11 123810418 123810418 C G OR4D5 Missense_Mutation p.S32C 0.12 tolerated(0.06) benign(0.002) TCGA-IG-A3I8-01 11 18741278 18741278 C G IGSF22 Missense_Mutation p.K227N 0.45 deleterious(0) probably_damaging(0.917) TCGA-IG-A3I8-01 11 233167 233167 C T SIRT3 Silent p.P174P 0.09 TCGA-IG-A3I8-01 11 45991391 45991391 G A PHF21A Missense_Mutation p.T225I 0.20 deleterious(0.01) possibly_damaging(0.715) TCGA-IG-A3I8-01 11 55595411 55595411 C A OR5L2 Silent p.S239S 0.18 TCGA-IG-A3I8-01 11 556252 556252 G A C11orf35 Silent p.F399F 0.21 TCGA-IG-A3I8-01 11 55904509 55904509 C T OR8J3 Missense_Mutation p.R229H 0.44 tolerated(0.3) benign(0.007) TCGA-IG-A3I8-01 11 56185376 56185376 C T OR5R1 Silent p.E111E 0.47 TCGA-IG-A3I8-01 11 66458832 66458832 G A SPTBN2 Missense_Mutation p.R1830C 0.22 deleterious(0) probably_damaging(0.989) TCGA-IG-A3I8-01 11 76814312 76814312 G A OMP Missense_Mutation p.V143I 0.13 tolerated_low_confidence(0.87) benign(0.001) TCGA-IG-A3I8-01 11 81601792 81601792 A C MIR4300 RNA 0.16 TCGA-IG-A3I8-01 11 85372905 85372905 T C CREBZF 3'UTR 0.24 TCGA-IG-A3I8-01 11 89882244 89882244 A T NAALAD2 Missense_Mutation p.Y151F 0.34 tolerated(1) benign(0.049) TCGA-IG-A3I8-01 12 102158696 102158696 C G GNPTAB Missense_Mutation p.E667Q 0.32 tolerated(0.07) probably_damaging(0.947) TCGA-IG-A3I8-01 12 124256179 124256179 A G DNAH10 Silent p.L49L 0.42 TCGA-IG-A3I8-01 12 56494025 56494025 G T ERBB3 Missense_Mutation p.C1066F 0.25 tolerated(0.7) benign(0.004) TCGA-IG-A3I8-01 12 75669885 75669885 C T CAPS2 3'UTR 0.37 TCGA-IG-A3I8-01 12 81593158 81593158 T C ACSS3 Missense_Mutation p.V430A 0.21 tolerated(0.1) benign(0.16) TCGA-IG-A3I8-01 13 19748204 19748204 G A TUBA3C Silent p.I384I 0.18 TCGA-IG-A3I8-01 14 103804756 103804757 - CAC EIF5 In_Frame_Ins p.P185dup 0.39 TCGA-IG-A3I8-01 14 22466396 22466396 G A TRAV17 Missense_Mutation p.C109Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-IG-A3I8-01 14 24900129 24900130 AG - KHNYN Frame_Shift_Del p.R65Sfs*16 0.35 TCGA-IG-A3I8-01 14 47309545 47309545 C T MDGA2 3'UTR 0.22 TCGA-IG-A3I8-01 14 64727213 64727213 G A ESR2 Silent p.A302A 0.37 TCGA-IG-A3I8-01 14 65009115 65009115 C T HSPA2 Silent p.D516D 0.07 TCGA-IG-A3I8-01 14 73962027 73962027 C T HEATR4 Missense_Mutation p.G897E 0.33 tolerated(1) benign(0.004) TCGA-IG-A3I8-01 14 93813699 93813699 G A COX8C Missense_Mutation p.A29T 0.53 tolerated(0.59) probably_damaging(0.948) TCGA-IG-A3I8-01 14 94710984 94710984 C T PPP4R4 Silent p.L427L 0.22 TCGA-IG-A3I8-01 15 101718437 101718437 G C CHSY1 Missense_Mutation p.S522W 0.20 tolerated(0.05) probably_damaging(0.941) TCGA-IG-A3I8-01 15 23889169 23889169 C T MAGEL2 Missense_Mutation p.G638S 0.25 tolerated_low_confidence(0.12) benign(0.053) TCGA-IG-A3I8-01 15 31664583 31664583 G A KLF13 3'UTR 0.47 TCGA-IG-A3I8-01 15 45406923 45406923 C T DUOXA2 Silent p.L40L 0.17 TCGA-IG-A3I8-01 15 50955214 50955214 C T TRPM7 Silent p.L11L 0.17 TCGA-IG-A3I8-01 15 93571110 93571110 G C CHD2 3'UTR 0.15 TCGA-IG-A3I8-01 16 15159153 15159153 G A RRN3 Silent p.T543T 0.12 TCGA-IG-A3I8-01 16 67288942 67288942 G T SLC9A5 Missense_Mutation p.G170V 0.43 deleterious(0) possibly_damaging(0.908) TCGA-IG-A3I8-01 16 70154430 70154430 G A PDPR Missense_Mutation p.R12K 0.09 tolerated_low_confidence(1) benign(0.008) TCGA-IG-A3I8-01 16 84050269 84050269 G A SLC38A8 Silent p.A339A 0.28 TCGA-IG-A3I8-01 17 42270964 42270964 C A ATXN7L3 3'UTR 0.20 TCGA-IG-A3I8-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.75 tolerated(0.11) benign(0.308) TCGA-IG-A3I8-01 18 13826394 13826394 C T MC5R Silent p.L210L 0.18 TCGA-IG-A3I8-01 18 32468493 32468493 T - DTNA Intron 0.25 TCGA-IG-A3I8-01 18 63430217 63430217 C T CDH7 Missense_Mutation p.R47C 0.69 deleterious(0) probably_damaging(1) TCGA-IG-A3I8-01 18 64172263 64172263 T C CDH19 Missense_Mutation p.K702R 0.11 tolerated(1) probably_damaging(0.999) TCGA-IG-A3I8-01 18 64211432 64211432 G A CDH19 Silent p.Y330Y 0.57 TCGA-IG-A3I8-01 18 65181541 65181541 G C DSEL Missense_Mutation p.T112R 0.11 tolerated(0.46) benign(0.11) TCGA-IG-A3I8-01 19 12874386 12874386 G A HOOK2 Missense_Mutation p.R656W 0.30 deleterious(0.04) possibly_damaging(0.568) TCGA-IG-A3I8-01 19 18779978 18779978 G A KLHL26 Missense_Mutation p.D591N 0.15 tolerated(0.15) probably_damaging(0.94) TCGA-IG-A3I8-01 19 22785662 22785662 C T AC011467.1 3'Flank 0.05 TCGA-IG-A3I8-01 19 23542601 23542601 T C ZNF91 Missense_Mutation p.I1060M 0.47 tolerated(0.22) probably_damaging(0.974) TCGA-IG-A3I8-01 19 30054821 30054821 C T VSTM2B Missense_Mutation p.R280C 0.30 tolerated_low_confidence(0.17) benign(0.037) TCGA-IG-A3I8-01 19 3600557 3600557 C T TBXA2R Missense_Mutation p.A26T 0.18 tolerated(0.27) probably_damaging(0.999) TCGA-IG-A3I8-01 19 4423372 4423372 C T CHAF1A Missense_Mutation p.R430W 0.24 deleterious(0) unknown(0) TCGA-IG-A3I8-01 19 49448200 49448200 G A DHDH 3'UTR 0.08 TCGA-IG-A3I8-01 19 52793497 52793497 A G ZNF766 Silent p.R151R 0.24 TCGA-IG-A3I8-01 19 53887291 53887291 C G ZNF525 3'UTR 0.39 TCGA-IG-A3I8-01 19 54721222 54721222 C G LILRB3 Missense_Mutation p.R573T 0.18 tolerated(0.34) benign(0.001) TCGA-IG-A3I8-01 19 54725814 54725825 GGAACAGGGCCT - LILRB3 In_Frame_Del p.Q178_F181del 0.32 TCGA-IG-A3I8-01 19 56895667 56895667 T C ZNF582 Silent p.G373G 0.31 TCGA-IG-A3I8-01 19 6433719 6433719 C T SLC25A41 5'UTR 0.35 TCGA-IG-A3I8-01 19 7584255 7584255 C T ZNF358 Missense_Mutation p.P43S 0.06 tolerated(0.36) benign(0.024) TCGA-IG-A3I8-01 1 12066704 12066704 C G MFN2 Missense_Mutation p.S609C 0.31 deleterious(0.01) benign(0.034) TCGA-IG-A3I8-01 1 157551430 157551430 G A FCRL4 Silent p.T380T 0.28 TCGA-IG-A3I8-01 1 167805612 167805612 C T ADCY10 Missense_Mutation p.D1082N 0.56 tolerated(0.81) benign(0) TCGA-IG-A3I8-01 1 173502849 173502849 A G SLC9C2 Missense_Mutation p.C688R 0.07 deleterious(0.01) probably_damaging(0.933) TCGA-IG-A3I8-01 1 176664899 176664899 T G PAPPA2 Missense_Mutation p.C884G 0.11 deleterious(0) probably_damaging(0.999) TCGA-IG-A3I8-01 1 19440346 19440346 C G UBR4 Intron 0.16 TCGA-IG-A3I8-01 1 19440388 19440388 C G UBR4 Intron 0.21 TCGA-IG-A3I8-01 1 196459055 196459055 C T KCNT2 Missense_Mutation p.R63H 0.38 deleterious(0) benign(0.34) TCGA-IG-A3I8-01 1 2113691 2113691 G T PRKCZ Intron 0.34 TCGA-IG-A3I8-01 1 228511299 228511299 G A OBSCN Missense_Mutation p.R6172H 0.29 probably_damaging(0.999) TCGA-IG-A3I8-01 1 235715256 235715256 C T GNG4 3'UTR 0.29 TCGA-IG-A3I8-01 1 24447957 24447957 C T IL22RA1 Missense_Mutation p.A355T 0.11 tolerated(0.2) benign(0.004) TCGA-IG-A3I8-01 1 3329081 3329081 G T PRDM16 Missense_Mutation p.D774Y 0.19 deleterious(0) probably_damaging(0.986) TCGA-IG-A3I8-01 1 36923529 36923529 G A MRPS15 Nonsense_Mutation p.R147* 0.24 TCGA-IG-A3I8-01 1 47075288 47075288 G C MOB3C 3'UTR 0.31 TCGA-IG-A3I8-01 1 74957871 74957871 A G TNNI3K Missense_Mutation p.S859G 0.10 tolerated_low_confidence(0.33) benign(0.028) TCGA-IG-A3I8-01 20 24993469 24993469 G A ACSS1 Silent p.T562T 0.10 TCGA-IG-A3I8-01 20 25434171 25434171 C T NINL Silent p.E1355E 0.20 TCGA-IG-A3I8-01 20 25434213 25434213 C T NINL Silent p.V1341V 0.19 TCGA-IG-A3I8-01 20 31997973 31997973 C T SNTA1 Missense_Mutation p.R402Q 0.20 tolerated(0.6) benign(0.211) TCGA-IG-A3I8-01 20 44174456 44174456 G C EPPIN Intron 0.06 TCGA-IG-A3I8-01 20 49231294 49231294 G A FAM65C Intron 0.11 TCGA-IG-A3I8-01 22 19958768 19958768 C T ARVCF Missense_Mutation p.V958I 0.17 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-IG-A3I8-01 22 46239555 46239555 A T ATXN10 3'UTR 0.38 TCGA-IG-A3I8-01 2 128604279 128604279 T C POLR2D 3'UTR 0.50 TCGA-IG-A3I8-01 2 140989056 140989056 C G LRP1B 3'UTR 0.30 TCGA-IG-A3I8-01 2 159526239 159526239 C T PKP4 Silent p.Y912Y 0.25 TCGA-IG-A3I8-01 2 178681580 178681580 C G PDE11A Missense_Mutation p.W571C 0.26 tolerated(0.17) probably_damaging(0.99) TCGA-IG-A3I8-01 2 179647637 179647637 C T TTN Missense_Mutation p.R999H 0.29 TCGA-IG-A3I8-01 2 179986657 179986657 C G SESTD1 Splice_Site p.X428_splice 0.30 TCGA-IG-A3I8-01 2 1926292 1926292 A G MYT1L Missense_Mutation p.S417P 0.20 deleterious(0) probably_damaging(0.999) TCGA-IG-A3I8-01 2 198949317 198949317 G T PLCL1 Missense_Mutation p.R359I 0.18 deleterious(0.01) possibly_damaging(0.61) TCGA-IG-A3I8-01 2 200213817 200213817 C G SATB2 Missense_Mutation p.Q260H 0.04 tolerated(0.15) benign(0.002) TCGA-IG-A3I8-01 2 201470309 201470309 G T AOX1 Missense_Mutation p.D289Y 0.21 tolerated(0.11) possibly_damaging(0.898) TCGA-IG-A3I8-01 2 201846546 201846546 G A FAM126B Missense_Mutation p.A347V 0.27 tolerated(0.68) benign(0.027) TCGA-IG-A3I8-01 2 228680209 228680209 G T CCL20 Missense_Mutation p.R39L 0.16 tolerated(0.67) benign(0.258) TCGA-IG-A3I8-01 2 233651989 233651989 G A GIGYF2 Missense_Mutation p.R243Q 0.11 probably_damaging(0.992) TCGA-IG-A3I8-01 2 238280601 238280601 G A COL6A3 Silent p.D1353D 0.39 TCGA-IG-A3I8-01 2 37513341 37513341 G A PRKD3 Missense_Mutation p.R297C 0.09 deleterious(0) probably_damaging(0.999) TCGA-IG-A3I8-01 2 54133795 54133795 T A PSME4 Missense_Mutation p.K961N 0.36 tolerated(0.1) benign(0.01) TCGA-IG-A3I8-01 2 67630697 67630697 G A ETAA1 Missense_Mutation p.G295R 0.17 deleterious(0) probably_damaging(1) TCGA-IG-A3I8-01 2 99449396 99449396 C T KIAA1211L Missense_Mutation p.G102R 0.35 deleterious(0) probably_damaging(0.98) TCGA-IG-A3I8-01 3 114018535 114018535 C A TIGIT Silent p.V161V 0.56 TCGA-IG-A3I8-01 3 124854513 124854513 C A SLC12A8 Nonsense_Mutation p.G246* 0.12 TCGA-IG-A3I8-01 3 149290715 149290715 G C WWTR1 Silent p.L168L 0.14 TCGA-IG-A3I8-01 3 151165454 151165454 C T IGSF10 Missense_Mutation p.R772Q 0.05 tolerated(1) benign(0.002) TCGA-IG-A3I8-01 3 170846630 170846630 G - TNIK Frame_Shift_Del p.P549Lfs*48 0.65 TCGA-IG-A3I8-01 3 62384724 62384724 G A CADPS 3'UTR 0.38 TCGA-IG-A3I8-01 3 67059087 67059087 G A KBTBD8 3'UTR 0.17 TCGA-IG-A3I8-01 4 146059597 146059597 T A OTUD4 Missense_Mutation p.N712I 0.24 deleterious(0) probably_damaging(0.988) TCGA-IG-A3I8-01 4 156831333 156831333 G A TDO2 Silent p.E196E 0.29 TCGA-IG-A3I8-01 5 127615932 127615932 C A FBN2 Nonsense_Mutation p.E2364* 0.11 TCGA-IG-A3I8-01 5 140572114 140572114 T C PCDHB10 5'UTR 0.59 TCGA-IG-A3I8-01 5 56189381 56189381 A G MAP3K1 Silent p.P1471P 0.65 TCGA-IG-A3I8-01 6 109854548 109854548 C T AK9 Missense_Mutation p.R1159H 0.25 deleterious(0) probably_damaging(1) TCGA-IG-A3I8-01 6 24145969 24145969 C T NRSN1 Missense_Mutation p.T128M 0.06 tolerated(0.27) benign(0.012) TCGA-IG-A3I8-01 6 32947844 32947844 C T BRD2 Missense_Mutation p.S729F 0.32 deleterious(0) possibly_damaging(0.485) TCGA-IG-A3I8-01 6 53133495 53133495 C A ELOVL5 3'Flank 0.33 TCGA-IG-A3I8-01 6 56494092 56494092 T C DST Silent p.Q940Q 0.48 TCGA-IG-A3I8-01 6 87725546 87725546 G A HTR1E Missense_Mutation p.R165H 0.10 tolerated(0.08) benign(0.005) TCGA-IG-A3I8-01 7 12409792 12409792 G T VWDE Missense_Mutation p.H714N 0.43 tolerated(0.37) benign(0.052) TCGA-IG-A3I8-01 7 143219877 143219877 G C EPHA1-AS1 RNA 0.17 TCGA-IG-A3I8-01 7 144096926 144096926 G A NOBOX Nonsense_Mutation p.R360* 0.35 TCGA-IG-A3I8-01 7 150034279 150034279 C A LRRC61 Missense_Mutation p.A110D 0.30 tolerated(0.16) benign(0.218) TCGA-IG-A3I8-01 7 154681223 154681223 G A DPP6 Missense_Mutation p.A812T 0.19 deleterious(0.03) benign(0.294) TCGA-IG-A3I8-01 7 2638117 2638117 C T IQCE Missense_Mutation p.P487S 0.39 tolerated(0.36) benign(0.024) TCGA-IG-A3I8-01 7 40027387 40027387 C T CDK13 Silent p.A467A 0.13 TCGA-IG-A3I8-01 7 42005959 42005959 G A GLI3 Silent p.R904R 0.37 TCGA-IG-A3I8-01 8 110417360 110417360 G C PKHD1L1 Splice_Site p.X557_splice 0.27 TCGA-IG-A3I8-01 8 110587571 110587571 G A SYBU Missense_Mutation p.A519V 0.06 tolerated(0.17) benign(0.157) TCGA-IG-A3I8-01 8 13425527 13425527 A C C8orf48 3'UTR 0.12 TCGA-IG-A3I8-01 8 1853763 1853763 C T ARHGEF10 Silent p.L616L 0.13 TCGA-IG-A3I8-01 8 49832626 49832626 C T SNAI2 Missense_Mutation p.D152N 0.15 tolerated(0.24) benign(0.121) TCGA-IG-A3I8-01 8 92097035 92097035 T G OTUD6B Nonsense_Mutation p.L304* 0.13 TCGA-IG-A3I8-01 9 101340276 101340276 C T GABBR2 Missense_Mutation p.V134I 0.10 tolerated(0.31) probably_damaging(0.93) TCGA-IG-A3I8-01 9 117825355 117825355 C T TNC Missense_Mutation p.E1292K 0.38 tolerated(0.09) benign(0.328) TCGA-IG-A3I8-01 9 131250255 131250255 G A ODF2 Missense_Mutation p.R496H 0.10 tolerated(0.09) benign(0.005) TCGA-IG-A3I8-01 9 134363281 134363281 G T PRRC2B Missense_Mutation p.S2008I 0.32 deleterious(0) possibly_damaging(0.501) TCGA-IG-A3I8-01 9 18775842 18775842 G A ADAMTSL1 Silent p.P833P 0.28 TCGA-IG-A3I8-01 X 111195502 111195502 C A TRPC5 Missense_Mutation p.K49N 0.64 deleterious(0) probably_damaging(0.93) TCGA-IG-A3I8-01 X 118975734 118975734 C T UPF3B Silent p.K196K 0.08 TCGA-IG-A3I8-01 X 120182347 120182347 C A GLUD2 Missense_Mutation p.S270Y 0.15 deleterious(0) probably_damaging(0.991) TCGA-IG-A3I8-01 X 24625955 24625955 C T PCYT1B Missense_Mutation p.A81T 0.17 deleterious(0) probably_damaging(0.958) TCGA-IG-A3I8-01 X 26213165 26213165 G C MAGEB6 Missense_Mutation p.R401T 0.49 deleterious(0) benign(0.291) TCGA-IG-A3I8-01 X 33357448 33357448 G A DMD 5'UTR 0.57 TCGA-IG-A3I8-01 X 48126361 48126361 C T SSX1 3'UTR 0.32 TCGA-IG-A3I8-01 X 51150911 51150911 G A CXorf67 Missense_Mutation p.R348H 0.09 tolerated(0.25) benign(0.062) TCGA-IG-A3I8-01 X 64709206 64709206 C A ZC3H12B Missense_Mutation p.S175R 0.13 tolerated(0.41) benign(0.024) TCGA-IG-A3I8-01 X 96013192 96013192 C T DIAPH2 Nonsense_Mutation p.R128* 0.07 TCGA-IG-A3QL-01 10 11299729 11299729 A C CELF2 Silent p.G144G 0.33 TCGA-IG-A3QL-01 10 12209761 12209761 G A NUDT5 Silent p.Y200Y 0.38 TCGA-IG-A3QL-01 10 124740046 124740046 A T PSTK Missense_Mutation p.K17N 0.95 deleterious(0.03) benign(0.014) TCGA-IG-A3QL-01 10 26417469 26417469 T A MYO3A Splice_Site p.X754_splice 0.94 TCGA-IG-A3QL-01 10 3208566 3208566 C T PITRM1 Silent p.Q91Q 0.31 TCGA-IG-A3QL-01 10 33468385 33468385 G T NRP1 3'UTR 0.36 TCGA-IG-A3QL-01 10 42832981 42832981 G C RP11-313J2.1 RNA 0.51 TCGA-IG-A3QL-01 10 96702021 96702021 G T CYP2C9 Missense_Mutation p.G135V 0.22 deleterious(0) probably_damaging(0.999) TCGA-IG-A3QL-01 11 113283425 113283425 C G DRD2 Missense_Mutation p.A331P 0.26 tolerated(0.28) benign(0.006) TCGA-IG-A3QL-01 11 123777707 123777707 C T OR8D4 Missense_Mutation p.S190F 0.12 deleterious(0.02) probably_damaging(0.984) TCGA-IG-A3QL-01 11 124543781 124543781 G C SPA17 5'UTR 0.70 TCGA-IG-A3QL-01 11 128651913 128651913 A C FLI1 Missense_Mutation p.K217T 0.15 tolerated(0.13) benign(0.011) TCGA-IG-A3QL-01 11 15096326 15096326 G C CALCB Missense_Mutation p.G21A 0.34 deleterious(0.04) benign(0.422) TCGA-IG-A3QL-01 11 22294478 22294478 C T ANO5 Silent p.S726S 0.25 TCGA-IG-A3QL-01 11 27389413 27389413 T A LGR4 3'UTR 0.24 TCGA-IG-A3QL-01 11 30439152 30439152 T C MPPED2 Missense_Mutation p.N189D 0.23 deleterious(0.01) probably_damaging(0.952) TCGA-IG-A3QL-01 11 5799447 5799447 G A OR52N5 Missense_Mutation p.R140C 0.32 deleterious(0.01) benign(0.046) TCGA-IG-A3QL-01 11 59612870 59612870 A T GIF Missense_Mutation p.S19R 0.23 deleterious(0.05) possibly_damaging(0.845) TCGA-IG-A3QL-01 11 62292799 62292799 G A AHNAK Silent p.F3030F 0.23 TCGA-IG-A3QL-01 11 62607112 62607112 G A WDR74 5'UTR 0.57 TCGA-IG-A3QL-01 11 73387840 73387840 T C RAB6A 3'UTR 0.32 TCGA-IG-A3QL-01 11 96074769 96074769 G A MAML2 Silent p.A97A 0.57 TCGA-IG-A3QL-01 12 10959271 10959271 A G TAS2R8 Silent p.L103L 0.47 TCGA-IG-A3QL-01 12 52159718 52159718 G C SCN8A Missense_Mutation p.E936D 0.44 deleterious(0) probably_damaging(0.981) TCGA-IG-A3QL-01 12 7016543 7016543 G A LRRC23 Silent p.E185E 0.22 TCGA-IG-A3QL-01 13 49762729 49762729 G A FNDC3A Missense_Mutation p.R635H 0.54 deleterious(0.03) benign(0.108) TCGA-IG-A3QL-01 13 50050669 50050669 A T SETDB2 Missense_Mutation p.E133D 0.41 tolerated(0.56) benign(0.013) TCGA-IG-A3QL-01 14 105609908 105609908 G A JAG2 Missense_Mutation p.A1051V 0.33 tolerated(0.16) benign(0.26) TCGA-IG-A3QL-01 14 23450545 23450545 C A AJUBA Nonsense_Mutation p.E311* 0.87 TCGA-IG-A3QL-01 14 58831580 58831580 C T ARID4A Silent p.L925L 0.83 TCGA-IG-A3QL-01 15 35271418 35271418 C - AC114546.1 5'UTR 0.28 TCGA-IG-A3QL-01 15 43931876 43931876 G A CATSPER2 Nonsense_Mutation p.Q228* 0.23 TCGA-IG-A3QL-01 15 54592555 54592555 A G UNC13C Missense_Mutation p.I1418V 0.41 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-IG-A3QL-01 15 59956127 59956127 T C BNIP2 3'UTR 0.48 TCGA-IG-A3QL-01 15 63889686 63889686 T C FBXL22 Missense_Mutation p.L32P 0.47 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IG-A3QL-01 15 86076844 86076844 C A AKAP13 Missense_Mutation p.Q71K 0.25 tolerated(0.1) benign(0.196) TCGA-IG-A3QL-01 16 108636 108636 G A RHBDF1 Silent p.F757F 0.33 TCGA-IG-A3QL-01 16 11001871 11001871 C T CIITA Missense_Mutation p.T841M 0.22 deleterious(0) benign(0.256) TCGA-IG-A3QL-01 16 15835388 15835388 G A MYH11 Silent p.L938L 0.60 TCGA-IG-A3QL-01 16 19132331 19132331 G C ITPRIPL2 3'UTR 0.13 TCGA-IG-A3QL-01 16 19191850 19191850 G A SYT17 Missense_Mutation p.R107Q 0.19 tolerated_low_confidence(0.11) benign(0.002) TCGA-IG-A3QL-01 16 3652151 3652151 C T SLX4 Missense_Mutation p.M306I 0.32 deleterious(0) probably_damaging(0.991) TCGA-IG-A3QL-01 17 17122347 17122347 G A FLCN Missense_Mutation p.R350W 0.25 deleterious(0) possibly_damaging(0.724) TCGA-IG-A3QL-01 17 21731474 21731474 G A UBBP4 Silent p.Q183Q 0.16 TCGA-IG-A3QL-01 17 21731478 21731478 G A UBBP4 Missense_Mutation p.E185K 0.18 tolerated(1) benign(0.001) TCGA-IG-A3QL-01 17 26523045 26523045 C T NLK 3'UTR 0.41 TCGA-IG-A3QL-01 17 35567390 35567390 G A ACACA Missense_Mutation p.T1233M 0.46 tolerated(0.1) probably_damaging(0.934) TCGA-IG-A3QL-01 17 46670668 46670668 G A HOXB5 Missense_Mutation p.S126F 0.37 deleterious(0.02) benign(0.215) TCGA-IG-A3QL-01 17 48745338 48745338 A G ABCC3 Missense_Mutation p.M584V 0.48 deleterious(0.04) benign(0.005) TCGA-IG-A3QL-01 17 49043483 49043483 C A SPAG9 3'UTR 0.44 TCGA-IG-A3QL-01 17 49091695 49091695 C A SPAG9 Nonsense_Mutation p.E371* 0.50 TCGA-IG-A3QL-01 17 72915950 72915950 G A USH1G Silent p.H327H 0.25 TCGA-IG-A3QL-01 17 73096277 73096277 T A SLC16A5 Silent p.L173L 0.28 TCGA-IG-A3QL-01 17 7577530 7577532 TGG - TP53 In_Frame_Del p.P250_I251delinsL 0.91 TCGA-IG-A3QL-01 18 34376768 34376768 T A TPGS2 Nonstop_Mutation p.*301Cext*32 0.30 TCGA-IG-A3QL-01 18 55996356 55996356 C T NEDD4L Silent p.P270P 0.44 TCGA-IG-A3QL-01 18 56247529 56247529 G A ALPK2 Missense_Mutation p.S160L 0.32 deleterious(0.01) benign(0.012) TCGA-IG-A3QL-01 19 11548711 11548711 C T PRKCSH Missense_Mutation p.P71S 0.14 tolerated(0.08) probably_damaging(0.974) TCGA-IG-A3QL-01 19 11944594 11944594 C T ZNF440 3'UTR 0.18 TCGA-IG-A3QL-01 19 12780638 12780638 G A WDR83 Missense_Mutation p.E12K 0.23 tolerated(0.18) benign(0.265) TCGA-IG-A3QL-01 19 17330466 17330466 G A USE1 Silent p.A208A 0.10 TCGA-IG-A3QL-01 19 20308434 20308434 T C ZNF486 Silent p.H305H 0.34 TCGA-IG-A3QL-01 19 21608172 21608172 C T ZNF493 3'UTR 0.33 TCGA-IG-A3QL-01 19 21991047 21991047 C T ZNF43 Missense_Mutation p.E598K 0.38 tolerated(0.05) benign(0.393) TCGA-IG-A3QL-01 19 2389893 2389893 G A TMPRSS9 Missense_Mutation p.S37N 0.37 deleterious(0.02) benign(0.209) TCGA-IG-A3QL-01 19 35250997 35250997 G A ZNF599 Missense_Mutation p.R237C 0.20 deleterious(0.04) possibly_damaging(0.901) TCGA-IG-A3QL-01 19 38378468 38378468 A C WDR87 Missense_Mutation p.L1909R 0.23 probably_damaging(0.963) TCGA-IG-A3QL-01 19 49797779 49797779 G A SLC6A16 Silent p.L421L 0.12 TCGA-IG-A3QL-01 19 49910924 49910924 C T CCDC155 Missense_Mutation p.T330M 0.23 deleterious(0.02) benign(0.112) TCGA-IG-A3QL-01 19 51633212 51633212 G A SIGLEC9 Intron 0.26 TCGA-IG-A3QL-01 19 51981881 51981881 G A CEACAM18 Silent p.E56E 0.53 TCGA-IG-A3QL-01 19 57724047 57724047 C T ZNF264 Nonsense_Mutation p.R528* 0.17 TCGA-IG-A3QL-01 1 1275451 1275451 G A DVL1 Silent p.D292D 0.46 TCGA-IG-A3QL-01 1 151109548 151109548 C T SEMA6C Silent p.V253V 0.29 TCGA-IG-A3QL-01 1 152283351 152283351 G T FLG Silent p.S1337S 0.19 TCGA-IG-A3QL-01 1 157094737 157094737 G A ETV3 Missense_Mutation p.R479C 0.18 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-IG-A3QL-01 1 158612700 158612700 T C SPTA1 Silent p.K1503K 0.61 TCGA-IG-A3QL-01 1 169433861 169433861 T A SLC19A2 3'UTR 0.62 TCGA-IG-A3QL-01 1 170136782 170136782 C T METTL11B Missense_Mutation p.R246W 0.16 tolerated(0.1) benign(0.001) TCGA-IG-A3QL-01 1 173556830 173556830 C T SLC9C2 Missense_Mutation p.R166H 0.17 tolerated(0.6) benign(0.001) TCGA-IG-A3QL-01 1 183091210 183091210 G T LAMC1 Missense_Mutation p.C742F 0.24 deleterious(0) probably_damaging(1) TCGA-IG-A3QL-01 1 244870267 244870267 T G DESI2 3'UTR 0.12 TCGA-IG-A3QL-01 1 247902646 247902646 A G OR14K1 Missense_Mutation p.I244V 0.15 tolerated(0.68) benign(0.016) TCGA-IG-A3QL-01 1 38185713 38185713 C A EPHA10 Silent p.A810A 0.29 TCGA-IG-A3QL-01 1 45294908 45294908 A - PTCH2 Frame_Shift_Del p.L431Rfs*103 0.23 TCGA-IG-A3QL-01 1 45980307 45980307 C T PRDX1 Missense_Mutation p.G129D 0.44 deleterious(0.02) possibly_damaging(0.673) TCGA-IG-A3QL-01 1 48695050 48695050 G T SLC5A9 Silent p.L166L 0.17 TCGA-IG-A3QL-01 20 25462723 25462723 C T NINL Missense_Mutation p.R564H 0.24 tolerated(0.45) benign(0.014) TCGA-IG-A3QL-01 20 62737818 62737818 C T NPBWR2 Missense_Mutation p.V123I 0.32 tolerated(1) benign(0) TCGA-IG-A3QL-01 21 32525396 32525396 G A TIAM1 Silent p.L1076L 0.22 TCGA-IG-A3QL-01 22 22681969 22681969 G C IGLV1-50 Missense_Mutation p.G51R 0.17 tolerated_low_confidence(0.07) benign(0.005) TCGA-IG-A3QL-01 22 22891014 22891014 C T PRAME Silent p.S335S 0.25 TCGA-IG-A3QL-01 2 140990160 140990160 T C LRP1B 3'UTR 0.16 TCGA-IG-A3QL-01 2 152684695 152684695 G C ARL5A 5'UTR 0.44 TCGA-IG-A3QL-01 2 178098909 178098909 A G NFE2L2 Missense_Mutation p.Y46H 0.22 tolerated(0.72) benign(0.001) TCGA-IG-A3QL-01 2 239040155 239040155 G A ESPNL Missense_Mutation p.A934T 0.42 tolerated(0.19) benign(0.009) TCGA-IG-A3QL-01 2 24222791 24222791 A T UBXN2A 3'UTR 0.79 TCGA-IG-A3QL-01 2 27456369 27456369 A T CAD Missense_Mutation p.S1061C 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-IG-A3QL-01 2 48033609 48033609 G C MSH6 Missense_Mutation p.E1274Q 0.59 deleterious(0) probably_damaging(0.998) TCGA-IG-A3QL-01 2 54895849 54895850 - G SPTBN1 3'UTR 0.35 TCGA-IG-A3QL-01 2 96852119 96852119 T A STARD7 3'UTR 0.17 TCGA-IG-A3QL-01 3 113672833 113672833 G T ZDHHC23 Missense_Mutation p.G150C 0.21 deleterious(0.04) probably_damaging(0.993) TCGA-IG-A3QL-01 3 129195555 129195555 G T IFT122 Missense_Mutation p.S404I 0.18 deleterious(0) possibly_damaging(0.817) TCGA-IG-A3QL-01 3 148460318 148460318 G T AGTR1 3'UTR 0.28 TCGA-IG-A3QL-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.52 tolerated(0.44) benign(0.085) TCGA-IG-A3QL-01 3 182948802 182948802 G A MCF2L2 Silent p.R622R 0.16 TCGA-IG-A3QL-01 3 182988947 182988947 A G B3GNT5 3'UTR 0.42 TCGA-IG-A3QL-01 3 192445098 192445098 T G RNU1-20P 3'Flank 0.40 TCGA-IG-A3QL-01 3 195510962 195510962 G A MUC4 Missense_Mutation p.L2497F 0.11 probably_damaging(0.972) TCGA-IG-A3QL-01 3 196387351 196387351 G A NRROS Silent p.L279L 0.54 TCGA-IG-A3QL-01 3 28373342 28373342 C A AZI2 Intron 0.41 TCGA-IG-A3QL-01 3 66444546 66444546 G T LRIG1 Silent p.A462A 0.88 TCGA-IG-A3QL-01 3 77681788 77681788 A C ROBO2 Intron 0.65 TCGA-IG-A3QL-01 3 88041494 88041494 A T HTR1F 3'UTR 0.44 TCGA-IG-A3QL-01 4 140311559 140311559 T G NAA15 3'UTR 0.70 TCGA-IG-A3QL-01 4 55981097 55981097 T A KDR Missense_Mutation p.E201V 0.38 deleterious(0) possibly_damaging(0.864) TCGA-IG-A3QL-01 4 84457661 84457661 G A AGPAT9 5'UTR 0.75 TCGA-IG-A3QL-01 5 134705831 134705831 C T H2AFY Silent p.A58A 0.39 TCGA-IG-A3QL-01 5 150031518 150031518 G A SYNPO 3'UTR 0.75 TCGA-IG-A3QL-01 5 178201530 178201530 C T AACSP1 RNA 0.24 TCGA-IG-A3QL-01 5 33892045 33892045 G C ADAMTS12 5'UTR 0.69 TCGA-IG-A3QL-01 5 33984553 33984553 C A SLC45A2 Nonsense_Mutation p.E46* 0.23 TCGA-IG-A3QL-01 5 67597163 67597163 G C PIK3R1 3'UTR 0.33 TCGA-IG-A3QL-01 6 33271548 33271548 T C TAPBP 3'UTR 0.91 TCGA-IG-A3QL-01 6 46787380 46787380 C T MEP1A Silent p.H165H 0.81 TCGA-IG-A3QL-01 7 127011736 127011736 T C ZNF800 3'UTR 0.27 TCGA-IG-A3QL-01 7 128370053 128370053 C T FAM71F1 Silent p.S317S 0.40 TCGA-IG-A3QL-01 7 136700063 136700063 T A CHRM2 Missense_Mutation p.S151T 0.21 deleterious(0) probably_damaging(0.99) TCGA-IG-A3QL-01 7 137374664 137374664 C T DGKI Silent p.E162E 0.17 TCGA-IG-A3QL-01 7 138552846 138552846 G A KIAA1549 Missense_Mutation p.R1602C 0.26 deleterious(0) probably_damaging(1) TCGA-IG-A3QL-01 7 140501216 140501216 G C BRAF Missense_Mutation p.L286V 0.41 tolerated(0.26) benign(0.101) TCGA-IG-A3QL-01 7 141619217 141619217 G C OR9A4 Missense_Mutation p.R181P 0.11 tolerated(0.14) probably_damaging(0.986) TCGA-IG-A3QL-01 7 149317094 149317094 C A ZNF767 RNA 0.14 TCGA-IG-A3QL-01 7 151878713 151878713 T C KMT2C Missense_Mutation p.T2078A 0.18 benign(0.033) TCGA-IG-A3QL-01 7 45614663 45614664 - T ADCY1 Frame_Shift_Ins p.A175Cfs*62 0.26 TCGA-IG-A3QL-01 7 64530858 64530858 T C SNORA22 3'Flank 0.43 TCGA-IG-A3QL-01 7 66006407 66006407 T A GS1-124K5.11 RNA 0.46 TCGA-IG-A3QL-01 7 73013902 73013902 G A MLXIPL Missense_Mutation p.P342L 0.38 tolerated(0.19) benign(0.075) TCGA-IG-A3QL-01 7 73013937 73013937 G A MLXIPL Silent p.L330L 0.56 TCGA-IG-A3QL-01 7 86556124 86556124 G T KIAA1324L Missense_Mutation p.P400T 0.43 deleterious(0) probably_damaging(0.984) TCGA-IG-A3QL-01 7 92761326 92761326 C A SAMD9L Missense_Mutation p.S1320I 0.28 deleterious(0.03) possibly_damaging(0.481) TCGA-IG-A3QL-01 7 93516157 93516157 C T TFPI2 Missense_Mutation p.R228Q 0.23 tolerated(0.36) benign(0.015) TCGA-IG-A3QL-01 7 98993772 98993772 G A PDAP1 3'UTR 0.15 TCGA-IG-A3QL-01 8 105509215 105509215 C G LRP12 Missense_Mutation p.R522T 0.46 deleterious(0) probably_damaging(0.996) TCGA-IG-A3QL-01 8 133723099 133723099 C A TMEM71 3'UTR 0.19 TCGA-IG-A3QL-01 8 139209800 139209800 A T FAM135B Missense_Mutation p.V261E 0.30 tolerated(0.74) benign(0.002) TCGA-IG-A3QL-01 8 139268978 139268978 C T FAM135B Missense_Mutation p.D108N 0.52 tolerated(0.33) benign(0.2) TCGA-IG-A3QL-01 8 57358329 57358329 A G PENK Intron 0.26 TCGA-IG-A3QL-01 8 61765096 61765096 A T CHD7 Silent p.V1978V 0.58 TCGA-IG-A3QL-01 8 67342179 67342179 G T RRS1 Silent p.L271L 0.43 TCGA-IG-A3QL-01 8 88885726 88885726 C G DCAF4L2 Silent p.L158L 0.43 TCGA-IG-A3QL-01 8 91071580 91071580 A G CALB1 3'UTR 0.30 TCGA-IG-A3QL-01 9 1056731 1056731 C G DMRT2 Missense_Mutation p.R382G 0.30 deleterious_low_confidence(0.04) benign(0.414) TCGA-IG-A3QL-01 9 139749014 139749017 GAGA - MAMDC4 Frame_Shift_Del p.E274Qfs*74 0.35 TCGA-IG-A3QL-01 9 34093300 34093300 G T DCAF12 Silent p.S336S 0.27 TCGA-IG-A3QL-01 9 34093301 34093301 G A DCAF12 Missense_Mutation p.S336F 0.27 deleterious(0.01) possibly_damaging(0.549) TCGA-IG-A3QL-01 9 98231241 98231241 G - PTCH1 Frame_Shift_Del p.P681Rfs*12 0.47 TCGA-IG-A3QL-01 X 102564427 102564427 A C BEX2 3'UTR 0.52 TCGA-IG-A3QL-01 X 153590885 153590885 G T FLNA Silent p.I822I 0.41 TCGA-IG-A3QL-01 X 36117945 36117945 T G CHDC2 Missense_Mutation p.F267L 0.86 deleterious(0) probably_damaging(0.997) TCGA-IG-A3QL-01 X 48053592 48053592 C T SSX5 Missense_Mutation p.D126N 0.66 deleterious(0) probably_damaging(0.992) TCGA-IG-A3QL-01 X 53641613 53641613 G T HUWE1 Missense_Mutation p.P715T 0.16 possibly_damaging(0.647) TCGA-IG-A3Y9-01 10 102762382 102762382 G C LZTS2 Silent p.V29V 0.22 TCGA-IG-A3Y9-01 10 12126748 12126748 C G DHTKD1 Missense_Mutation p.Q174E 0.07 tolerated(0.28) benign(0.071) TCGA-IG-A3Y9-01 10 125447475 125447475 C G GPR26 Missense_Mutation p.I271M 0.19 deleterious(0) probably_damaging(0.985) TCGA-IG-A3Y9-01 10 127541972 127541972 T G BCCIP 3'UTR 0.28 TCGA-IG-A3Y9-01 10 15688954 15688954 C T ITGA8 Silent p.V366V 0.12 TCGA-IG-A3Y9-01 10 23729743 23729743 C G OTUD1 Missense_Mutation p.Q453E 0.08 deleterious(0) probably_damaging(0.93) TCGA-IG-A3Y9-01 10 31138696 31138696 C G ZNF438 Missense_Mutation p.S213T 0.08 tolerated(0.58) benign(0.031) TCGA-IG-A3Y9-01 10 42832735 42832735 C G RP11-313J2.1 RNA 0.19 TCGA-IG-A3Y9-01 10 50186394 50186394 G A WDFY4 Missense_Mutation p.R3111Q 0.16 tolerated(0.8) benign(0) TCGA-IG-A3Y9-01 10 5994654 5994654 G C IL15RA 3'UTR 0.14 TCGA-IG-A3Y9-01 10 73499506 73499506 G C CDH23 Missense_Mutation p.E1494Q 0.12 tolerated(0.53) probably_damaging(0.943) TCGA-IG-A3Y9-01 10 79784318 79784318 C T POLR3A Missense_Mutation p.G212R 0.21 tolerated(0.51) benign(0.005) TCGA-IG-A3Y9-01 10 97918367 97918367 G C ZNF518A RNA 0.16 TCGA-IG-A3Y9-01 11 102094417 102094417 C G YAP1 Missense_Mutation p.S366C 0.16 deleterious(0.03) benign(0.021) TCGA-IG-A3Y9-01 11 113856798 113856798 C T HTR3A Silent p.V208V 0.10 TCGA-IG-A3Y9-01 11 117302357 117302357 G C DSCAML1 Missense_Mutation p.S1816C 0.10 deleterious(0.02) possibly_damaging(0.879) TCGA-IG-A3Y9-01 11 118375063 118375063 C G KMT2A Missense_Mutation p.S2819C 0.10 probably_damaging(0.944) TCGA-IG-A3Y9-01 11 118766721 118766721 G - BCL9L 3'UTR 0.17 TCGA-IG-A3Y9-01 11 130011951 130011951 C G APLP2 Missense_Mutation p.I724M 0.09 deleterious(0) probably_damaging(0.999) TCGA-IG-A3Y9-01 11 130318901 130318901 C T ADAMTS15 Silent p.F11F 0.07 TCGA-IG-A3Y9-01 11 32452095 32452095 C T WT1 Intron 0.08 TCGA-IG-A3Y9-01 11 35278066 35278066 C G SLC1A2 3'UTR 0.25 TCGA-IG-A3Y9-01 11 55321806 55321806 A G OR4C15 Silent p.A8A 0.12 TCGA-IG-A3Y9-01 11 55321807 55321807 C A OR4C15 Missense_Mutation p.L9I 0.12 deleterious_low_confidence(0) unknown(0) TCGA-IG-A3Y9-01 11 5665062 5665062 G C TRIM34 3'UTR 0.15 TCGA-IG-A3Y9-01 11 56756448 56756448 G A OR5AK2 Silent p.Q20Q 0.09 TCGA-IG-A3Y9-01 11 5717813 5717813 G A TRIM22 Nonsense_Mutation p.W117* 0.18 TCGA-IG-A3Y9-01 11 65373507 65373507 C T MAP3K11 Missense_Mutation p.R550Q 0.13 tolerated(0.29) possibly_damaging(0.885) TCGA-IG-A3Y9-01 11 71188367 71188367 G A NADSYN1 Intron 0.16 TCGA-IG-A3Y9-01 11 74414394 74414394 C T CHRDL2 Missense_Mutation p.R301H 0.07 tolerated(0.54) benign(0.001) TCGA-IG-A3Y9-01 11 7690913 7690913 C T CYB5R2 Silent p.R67R 0.05 TCGA-IG-A3Y9-01 11 77907300 77907300 G A USP35 Silent p.K3K 0.07 TCGA-IG-A3Y9-01 11 9522726 9522728 AGG - ZNF143 In_Frame_Del p.G353del 0.14 TCGA-IG-A3Y9-01 12 100043170 100043170 G A FAM71C Silent p.E240E 0.11 TCGA-IG-A3Y9-01 12 10758710 10758710 C G MAGOHB 3'UTR 0.07 TCGA-IG-A3Y9-01 12 120649445 120649445 G A PXN 3'UTR 0.07 TCGA-IG-A3Y9-01 12 14664608 14664608 G A PLBD1 Silent p.S294S 0.12 TCGA-IG-A3Y9-01 12 1936680 1936680 G C LRTM2 5'UTR 0.08 TCGA-IG-A3Y9-01 12 45410229 45410229 G C DBX2 Nonsense_Mutation p.S287* 0.13 TCGA-IG-A3Y9-01 12 49065687 49065687 G C KANSL2 Missense_Mutation p.R202G 0.08 deleterious(0) probably_damaging(0.984) TCGA-IG-A3Y9-01 12 57472553 57472553 C T TMEM194A 5'Flank 0.05 TCGA-IG-A3Y9-01 12 75728517 75728517 G A GLIPR1L1 Silent p.L3L 0.12 TCGA-IG-A3Y9-01 12 78569186 78569186 G C NAV3 Missense_Mutation p.K1694N 0.08 deleterious(0.01) probably_damaging(0.925) TCGA-IG-A3Y9-01 12 88481593 88481593 G C CEP290 Missense_Mutation p.I1386M 0.12 probably_damaging(0.999) TCGA-IG-A3Y9-01 13 100861714 100861714 C G PCCA Silent p.V199V 0.06 TCGA-IG-A3Y9-01 13 111286975 111286975 C T CARKD Intron 0.08 TCGA-IG-A3Y9-01 13 32954186 32954186 C T BRCA2 Missense_Mutation p.P3054S 0.06 tolerated(0.36) benign(0.06) TCGA-IG-A3Y9-01 13 33330027 33330027 C G PDS5B Missense_Mutation p.H997D 0.17 tolerated(0.1) probably_damaging(0.977) TCGA-IG-A3Y9-01 13 41703267 41703267 T A KBTBD6 3'UTR 0.19 TCGA-IG-A3Y9-01 13 45768277 45768277 G A KCTD4 Silent p.F142F 0.09 TCGA-IG-A3Y9-01 13 47012009 47012009 C G PPP1R2P4 RNA 0.09 TCGA-IG-A3Y9-01 13 99538803 99538803 G C DOCK9 Missense_Mutation p.P707A 0.15 deleterious(0) probably_damaging(0.999) TCGA-IG-A3Y9-01 14 102499768 102499768 C T DYNC1H1 Silent p.L3454L 0.17 TCGA-IG-A3Y9-01 14 105716690 105716690 C A BTBD6 Missense_Mutation p.S380Y 0.21 tolerated(0.79) benign(0.156) TCGA-IG-A3Y9-01 14 20007579 20007579 G C POTEM Missense_Mutation p.S370C 0.24 deleterious(0.02) probably_damaging(0.987) TCGA-IG-A3Y9-01 14 23235862 23235862 T C OXA1L Silent p.G44G 0.12 TCGA-IG-A3Y9-01 14 34029384 34029384 G A NPAS3 Missense_Mutation p.E176K 0.13 deleterious(0) possibly_damaging(0.635) TCGA-IG-A3Y9-01 14 55203862 55203862 G C SAMD4A Missense_Mutation p.R279T 0.10 deleterious(0.01) possibly_damaging(0.576) TCGA-IG-A3Y9-01 14 61201556 61201556 G A MNAT1 5'UTR 0.05 TCGA-IG-A3Y9-01 14 64151541 64151541 G C SGPP1 3'UTR 0.11 TCGA-IG-A3Y9-01 14 64457753 64457753 G A SYNE2 Missense_Mutation p.E856K 0.18 possibly_damaging(0.803) TCGA-IG-A3Y9-01 14 64469753 64469753 C T SYNE2 Missense_Mutation p.H1368Y 0.12 benign(0.004) TCGA-IG-A3Y9-01 14 65009364 65009364 G A HSPA2 Silent p.Q599Q 0.09 TCGA-IG-A3Y9-01 14 67669818 67669818 G C FAM71D Missense_Mutation p.R56T 0.13 deleterious(0) probably_damaging(0.991) TCGA-IG-A3Y9-01 14 67819642 67819642 C G ATP6V1D Missense_Mutation p.E53Q 0.10 tolerated(0.16) benign(0.053) TCGA-IG-A3Y9-01 14 72055797 72055797 G C SIPA1L1 Missense_Mutation p.G403A 0.10 deleterious(0) probably_damaging(0.996) TCGA-IG-A3Y9-01 14 74182388 74182388 G A ELMSAN1 3'UTR 0.21 TCGA-IG-A3Y9-01 14 76447096 76447096 G C TGFB3 Missense_Mutation p.I47M 0.16 deleterious(0) probably_damaging(0.999) TCGA-IG-A3Y9-01 14 90446926 90446926 C T TDP1 Silent p.V278V 0.10 TCGA-IG-A3Y9-01 14 94594153 94594153 C G IFI27L2 Missense_Mutation p.E126Q 0.08 deleterious_low_confidence(0.01) benign(0.403) TCGA-IG-A3Y9-01 14 95033361 95033361 T A SERPINA4 Missense_Mutation p.V235D 0.11 deleterious(0) probably_damaging(0.998) TCGA-IG-A3Y9-01 15 24927196 24927196 G C NPAP1 3'UTR 0.12 TCGA-IG-A3Y9-01 15 30653728 30653728 C G CHRFAM7A 3'Flank 0.16 TCGA-IG-A3Y9-01 15 34078107 34078107 C T RYR3 Silent p.L3171L 0.13 TCGA-IG-A3Y9-01 15 50792993 50792993 G A USP50 Silent p.F326F 0.07 TCGA-IG-A3Y9-01 15 54860107 54860107 C G UNC13C Missense_Mutation p.A2023G 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.664) TCGA-IG-A3Y9-01 15 72244100 72244100 C G MYO9A Intron 0.09 TCGA-IG-A3Y9-01 15 73048618 73048618 C G ADPGK Missense_Mutation p.E272Q 0.18 tolerated(0.06) benign(0.037) TCGA-IG-A3Y9-01 15 77407012 77407012 C T PEAK1 Missense_Mutation p.R1576H 0.17 deleterious(0) probably_damaging(1) TCGA-IG-A3Y9-01 15 83807341 83807341 G A HDGFRP3 3'UTR 0.17 TCGA-IG-A3Y9-01 15 89398787 89398787 G A ACAN Missense_Mutation p.D991N 0.17 deleterious(0.01) possibly_damaging(0.893) TCGA-IG-A3Y9-01 16 18823362 18823362 G A SMG1 Missense_Mutation p.S3570L 0.12 tolerated(0.13) benign(0.15) TCGA-IG-A3Y9-01 16 29821856 29821856 C T MAZ 3'UTR 0.14 TCGA-IG-A3Y9-01 16 3190882 3190882 G A ZNF213 Missense_Mutation p.R305Q 0.26 tolerated(0.15) benign(0.034) TCGA-IG-A3Y9-01 16 46952548 46952548 G A GPT2 Missense_Mutation p.V306M 0.05 deleterious(0.01) probably_damaging(0.913) TCGA-IG-A3Y9-01 16 4827743 4827743 T C SEPT12 3'UTR 0.10 TCGA-IG-A3Y9-01 16 48395764 48395764 G C LONP2 3'Flank 0.14 TCGA-IG-A3Y9-01 16 50261847 50261847 C T PAPD5 Missense_Mutation p.S618F 0.23 deleterious_low_confidence(0.02) benign(0.343) TCGA-IG-A3Y9-01 16 50345982 50345982 G A ADCY7 Silent p.K828K 0.06 TCGA-IG-A3Y9-01 16 57290781 57290783 CCA - PLLP 3'UTR 0.16 TCGA-IG-A3Y9-01 16 67292260 67292260 G A SLC9A5 Silent p.L512L 0.13 TCGA-IG-A3Y9-01 16 67469707 67469707 G A HSD11B2 Missense_Mutation p.V148M 0.23 deleterious(0) possibly_damaging(0.807) TCGA-IG-A3Y9-01 16 69737362 69737362 G T NFAT5 3'UTR 0.31 TCGA-IG-A3Y9-01 16 70390094 70390094 G A DDX19A Silent p.L79L 0.06 TCGA-IG-A3Y9-01 16 70513177 70513177 G C FUK Missense_Mutation p.M1008I 0.07 tolerated(0.12) benign(0.019) TCGA-IG-A3Y9-01 16 715471 715471 C A WDR90 Intron 0.11 TCGA-IG-A3Y9-01 16 71765825 71765825 G C AP1G1 3'Flank 0.16 TCGA-IG-A3Y9-01 16 75298373 75298373 G C BCAR1 Missense_Mutation p.S9C 0.13 deleterious_low_confidence(0) benign(0.043) TCGA-IG-A3Y9-01 16 7761756 7761756 G A RBFOX1 3'UTR 0.15 TCGA-IG-A3Y9-01 16 84199429 84199429 G A DNAAF1 Missense_Mutation p.E302K 0.18 deleterious(0) probably_damaging(0.985) TCGA-IG-A3Y9-01 16 85711917 85711917 G A GINS2 Silent p.I153I 0.11 TCGA-IG-A3Y9-01 17 10206759 10206759 C G MYH13 Silent p.L1841L 0.09 TCGA-IG-A3Y9-01 17 10354724 10354724 C T MYH4 Missense_Mutation p.E1262K 0.11 deleterious(0) possibly_damaging(0.852) TCGA-IG-A3Y9-01 17 1417222 1417222 G A INPP5K Silent p.L32L 0.09 TCGA-IG-A3Y9-01 17 1551189 1551189 C T RILP Missense_Mutation p.R295Q 0.08 deleterious(0.04) possibly_damaging(0.71) TCGA-IG-A3Y9-01 17 17788081 17788081 G A TOM1L2 Missense_Mutation p.A123V 0.06 deleterious(0.01) possibly_damaging(0.481) TCGA-IG-A3Y9-01 17 28887700 28887700 G A TBC1D29 Missense_Mutation p.M48I 0.09 deleterious(0.02) possibly_damaging(0.584) TCGA-IG-A3Y9-01 17 3352231 3352231 G C SPATA22 Nonsense_Mutation p.S181* 0.04 TCGA-IG-A3Y9-01 17 35746184 35746184 C T C17orf78 Nonsense_Mutation p.Q213* 0.22 TCGA-IG-A3Y9-01 17 3831294 3831294 G C ATP2A3 Silent p.L1040L 0.07 TCGA-IG-A3Y9-01 17 38948703 38948703 C G KRT28 Missense_Mutation p.K457N 0.08 deleterious_low_confidence(0.03) possibly_damaging(0.691) TCGA-IG-A3Y9-01 17 39723652 39723652 C T KRT9 Missense_Mutation p.S582N 0.13 deleterious_low_confidence(0) unknown(0) TCGA-IG-A3Y9-01 17 42743838 42743838 G A C17orf104 Missense_Mutation p.D187N 0.10 tolerated(0.21) benign(0.302) TCGA-IG-A3Y9-01 17 43585505 43585505 C G LRRC37A4P RNA 0.13 TCGA-IG-A3Y9-01 17 59949628 59949628 G C INTS2 Missense_Mutation p.Q934E 0.15 deleterious(0) benign(0.186) TCGA-IG-A3Y9-01 17 62290620 62290620 C A TEX2 Missense_Mutation p.A320S 0.08 tolerated(0.34) benign(0.155) TCGA-IG-A3Y9-01 17 72588749 72588749 T A C17orf77 Silent p.T188T 0.13 TCGA-IG-A3Y9-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.26 deleterious(0) probably_damaging(0.997) TCGA-IG-A3Y9-01 17 76423160 76423160 C G DNAH17 Missense_Mutation p.E4229D 0.16 benign(0.018) TCGA-IG-A3Y9-01 17 76888114 76888114 G A DDC8 Nonsense_Mutation p.R158* 0.16 TCGA-IG-A3Y9-01 17 76989748 76989748 C G CANT1 Missense_Mutation p.E364Q 0.20 deleterious(0.03) probably_damaging(0.961) TCGA-IG-A3Y9-01 17 79288254 79288254 G C TMEM105 Silent p.L3L 0.15 TCGA-IG-A3Y9-01 18 19029503 19029503 G C GREB1L Missense_Mutation p.E476Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-IG-A3Y9-01 18 19109301 19109301 C G ESCO1 3'UTR 0.19 TCGA-IG-A3Y9-01 18 42532279 42532279 C T SETBP1 Missense_Mutation p.H992Y 0.10 deleterious(0.01) benign(0.426) TCGA-IG-A3Y9-01 18 50976874 50976874 G A DCC Silent p.P1078P 0.16 TCGA-IG-A3Y9-01 18 65177721 65177721 T C DSEL 3'UTR 0.17 TCGA-IG-A3Y9-01 19 10401883 10401883 G A ICAM5 Missense_Mutation p.R73Q 0.09 deleterious(0.01) possibly_damaging(0.859) TCGA-IG-A3Y9-01 19 11510589 11510589 C G RGL3 Missense_Mutation p.R569T 0.13 tolerated(0.32) unknown(0) TCGA-IG-A3Y9-01 19 12059541 12059541 C T ZNF700 Silent p.F234F 0.08 TCGA-IG-A3Y9-01 19 13397432 13397432 G T CACNA1A Silent p.V1146V 0.17 TCGA-IG-A3Y9-01 19 14522410 14522410 C A DDX39A Missense_Mutation p.V113L 0.07 deleterious(0.04) benign(0.048) TCGA-IG-A3Y9-01 19 14677011 14677011 C T NDUFB7 Silent p.E116E 0.07 TCGA-IG-A3Y9-01 19 14867093 14867093 C G EMR2 Silent p.V383V 0.14 TCGA-IG-A3Y9-01 19 15483682 15483682 G A AKAP8 Missense_Mutation p.R281W 0.08 deleterious(0.01) benign(0.064) TCGA-IG-A3Y9-01 19 16146762 16146762 G C LINC00905 RNA 0.13 TCGA-IG-A3Y9-01 19 18972827 18972827 G A UPF1 Silent p.E822E 0.18 TCGA-IG-A3Y9-01 19 18972858 18972858 G A UPF1 Missense_Mutation p.E833K 0.15 deleterious(0) probably_damaging(0.955) TCGA-IG-A3Y9-01 19 20735329 20735329 T C ZNF737 Missense_Mutation p.K60E 0.09 deleterious(0.03) benign(0.008) TCGA-IG-A3Y9-01 19 30156563 30156563 C G PLEKHF1 Intron 0.09 TCGA-IG-A3Y9-01 19 36149574 36149574 G C COX6B1 3'UTR 0.14 TCGA-IG-A3Y9-01 19 37641671 37641671 G A ZNF585A 3'UTR 0.11 TCGA-IG-A3Y9-01 19 41848072 41848072 C A TGFB1 Intron 0.15 TCGA-IG-A3Y9-01 19 43983562 43983562 C G PHLDB3 Missense_Mutation p.D557H 0.10 deleterious(0) probably_damaging(1) TCGA-IG-A3Y9-01 19 45476365 45476365 C A CLPTM1 Silent p.I69I 0.18 TCGA-IG-A3Y9-01 19 50372347 50372347 G A AKT1S1 3'UTR 0.44 TCGA-IG-A3Y9-01 19 50720965 50720965 C T MYH14 Missense_Mutation p.R167C 0.08 deleterious(0) probably_damaging(1) TCGA-IG-A3Y9-01 19 58361636 58361636 G C CTD-2583A14.10 Intron 0.13 TCGA-IG-A3Y9-01 19 58869445 58869445 G A ZNF497 Intron 0.13 TCGA-IG-A3Y9-01 19 6375015 6375015 G C ALKBH7 3'UTR 0.07 TCGA-IG-A3Y9-01 19 806462 806462 C T PTBP1 Missense_Mutation p.A342V 0.11 tolerated(0.27) possibly_damaging(0.506) TCGA-IG-A3Y9-01 19 9084625 9084625 G C MUC16 Nonsense_Mutation p.S2397* 0.11 TCGA-IG-A3Y9-01 1 100548803 100548803 C T HIAT1 3'UTR 0.09 TCGA-IG-A3Y9-01 1 11735184 11735184 G A MAD2L2 Silent p.D183D 0.09 TCGA-IG-A3Y9-01 1 118596628 118596628 G C SPAG17 Silent p.L937L 0.06 TCGA-IG-A3Y9-01 1 120484162 120484162 C T NOTCH2 Missense_Mutation p.E990K 0.09 deleterious(0) probably_damaging(0.993) TCGA-IG-A3Y9-01 1 12251047 12251047 C T TNFRSF1B Missense_Mutation p.S71L 0.10 tolerated(0.08) benign(0.361) TCGA-IG-A3Y9-01 1 12304375 12304375 C T VPS13D Missense_Mutation p.S83F 0.19 probably_damaging(0.983) TCGA-IG-A3Y9-01 1 150238645 150238645 G A APH1A Intron 0.13 TCGA-IG-A3Y9-01 1 150923931 150923931 G A SETDB1 Silent p.K768K 0.14 TCGA-IG-A3Y9-01 1 153631615 153631615 G C SNAPIN Missense_Mutation p.E49Q 0.11 tolerated(0.57) benign(0.013) TCGA-IG-A3Y9-01 1 156107633 156107633 C A LMNA Intron 0.16 TCGA-IG-A3Y9-01 1 158592856 158592856 G C SPTA1 Missense_Mutation p.L2013V 0.09 tolerated(0.79) possibly_damaging(0.822) TCGA-IG-A3Y9-01 1 160268910 160268910 G C COPA Missense_Mutation p.I613M 0.05 deleterious(0.03) benign(0.037) TCGA-IG-A3Y9-01 1 160276271 160276271 T A COPA Missense_Mutation p.N439Y 0.07 deleterious(0) probably_damaging(0.914) TCGA-IG-A3Y9-01 1 16043265 16043265 C G PLEKHM2 Missense_Mutation p.I77M 0.09 deleterious(0) possibly_damaging(0.857) TCGA-IG-A3Y9-01 1 170959080 170959080 T C MROH9 Silent p.L322L 0.06 TCGA-IG-A3Y9-01 1 173744844 173744844 G C KLHL20 Missense_Mutation p.G501R 0.08 deleterious(0.04) possibly_damaging(0.489) TCGA-IG-A3Y9-01 1 185902877 185902877 C G HMCN1 Missense_Mutation p.F583L 0.11 benign(0.122) TCGA-IG-A3Y9-01 1 185902924 185902924 C G HMCN1 Nonsense_Mutation p.S599* 0.07 TCGA-IG-A3Y9-01 1 204167466 204167466 C G GOLT1A 3'UTR 0.06 TCGA-IG-A3Y9-01 1 204228389 204228389 C T PLEKHA6 Missense_Mutation p.R335Q 0.12 deleterious(0.04) benign(0.006) TCGA-IG-A3Y9-01 1 208390941 208390941 G A PLXNA2 Silent p.L109L 0.09 TCGA-IG-A3Y9-01 1 212798703 212798703 G A FAM71A Missense_Mutation p.D162N 0.07 deleterious(0.02) possibly_damaging(0.84) TCGA-IG-A3Y9-01 1 218480911 218480911 G A RRP15 Silent p.L214L 0.10 TCGA-IG-A3Y9-01 1 222826624 222826624 G C MIA3 Missense_Mutation p.E1422Q 0.08 deleterious(0) benign(0.338) TCGA-IG-A3Y9-01 1 225576110 225576110 G A DNAH14 Silent p.L3259L 0.11 TCGA-IG-A3Y9-01 1 237895425 237895425 G C RYR2 Missense_Mutation p.S3672T 0.13 possibly_damaging(0.735) TCGA-IG-A3Y9-01 1 241798714 241798714 G C CHML Missense_Mutation p.L119V 0.12 tolerated(0.1) benign(0.049) TCGA-IG-A3Y9-01 1 248570267 248570267 C G OR2T1 Silent p.L324L 0.05 TCGA-IG-A3Y9-01 1 27877849 27877849 C G AHDC1 Missense_Mutation p.E260Q 0.09 tolerated_low_confidence(0.13) possibly_damaging(0.607) TCGA-IG-A3Y9-01 1 28209200 28209200 C G THEMIS2 Silent p.V455V 0.15 TCGA-IG-A3Y9-01 1 28907438 28907438 A G TRNAU1AP 3'Flank 0.11 TCGA-IG-A3Y9-01 1 39340430 39340430 G A GJA9 Silent p.F447F 0.12 TCGA-IG-A3Y9-01 1 46193360 46193360 G A IPP Nonsense_Mutation p.Q331* 0.14 TCGA-IG-A3Y9-01 1 53544495 53544495 C T PODN Missense_Mutation p.S486L 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-IG-A3Y9-01 1 68910473 68910473 C A RPE65 Missense_Mutation p.K113N 0.09 deleterious(0) possibly_damaging(0.872) TCGA-IG-A3Y9-01 20 21695534 21695534 C G PAX1 3'UTR 0.15 TCGA-IG-A3Y9-01 20 2818908 2818908 C A PCED1A Missense_Mutation p.V271L 0.10 tolerated(0.06) possibly_damaging(0.737) TCGA-IG-A3Y9-01 20 39788339 39788339 C T PLCG1 Missense_Mutation p.S104L 0.05 tolerated(0.33) benign(0.04) TCGA-IG-A3Y9-01 20 41306583 41306583 C G PTPRT Missense_Mutation p.R359P 0.07 tolerated(0.07) possibly_damaging(0.856) TCGA-IG-A3Y9-01 20 42908227 42908227 C G GDAP1L1 3'UTR 0.15 TCGA-IG-A3Y9-01 20 43353384 43353384 G C WISP2 Missense_Mutation p.E95Q 0.10 tolerated(0.24) benign(0.097) TCGA-IG-A3Y9-01 20 43533668 43533668 A G YWHAB Missense_Mutation p.M162V 0.38 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IG-A3Y9-01 20 43850642 43850642 T C SEMG2 Silent p.F123F 0.19 TCGA-IG-A3Y9-01 20 43955594 43955594 G C SDC4 3'UTR 0.17 TCGA-IG-A3Y9-01 20 44567713 44567713 G C PCIF1 Missense_Mutation p.Q25H 0.11 tolerated(0.35) benign(0.001) TCGA-IG-A3Y9-01 20 44994961 44994961 A G ELMO2 3'UTR 0.19 TCGA-IG-A3Y9-01 20 5904375 5904375 C G CHGB Missense_Mutation p.L529V 0.29 tolerated(0.28) benign(0.022) TCGA-IG-A3Y9-01 20 60701373 60701373 C T LSM14B Missense_Mutation p.S102F 0.13 deleterious(0) benign(0.377) TCGA-IG-A3Y9-01 20 61297920 61297920 G A SLCO4A1 Missense_Mutation p.G489S 0.10 tolerated(0.87) benign(0.001) TCGA-IG-A3Y9-01 20 61510579 61510579 G A DIDO1 3'UTR 0.22 TCGA-IG-A3Y9-01 20 61510742 61510742 C T DIDO1 Missense_Mutation p.R2189Q 0.10 unknown(0) TCGA-IG-A3Y9-01 21 32638328 32638328 G A TIAM1 Nonsense_Mutation p.Q321* 0.06 TCGA-IG-A3Y9-01 21 37775142 37775142 C T CHAF1B Silent p.L250L 0.09 TCGA-IG-A3Y9-01 21 43221625 43221625 C T PRDM15 Silent p.P1433P 0.07 TCGA-IG-A3Y9-01 21 45152385 45152385 G C PDXK Intron 0.16 TCGA-IG-A3Y9-01 22 19241719 19241719 C G CLTCL1 Missense_Mutation p.E94D 0.15 tolerated(0.31) benign(0.438) TCGA-IG-A3Y9-01 22 20104018 20104018 C T TRMT2A Missense_Mutation p.G48R 0.06 tolerated(0.12) benign(0.006) TCGA-IG-A3Y9-01 22 26000407 26000407 C G ADRBK2 Missense_Mutation p.F59L 0.18 deleterious(0.03) probably_damaging(0.989) TCGA-IG-A3Y9-01 22 30983347 30983347 C G PES1 Missense_Mutation p.K98N 0.04 deleterious(0.02) probably_damaging(0.991) TCGA-IG-A3Y9-01 22 32587193 32587193 G C RFPL2 Missense_Mutation p.R235G 0.06 tolerated(0.46) benign(0.004) TCGA-IG-A3Y9-01 22 35743592 35743592 G A TOM1 3'UTR 0.23 TCGA-IG-A3Y9-01 22 37326490 37326490 G A CSF2RB Silent p.V264V 0.21 TCGA-IG-A3Y9-01 22 37770925 37770925 G A ELFN2 Missense_Mutation p.S217L 0.14 deleterious(0) benign(0.283) TCGA-IG-A3Y9-01 22 42908866 42908866 C T RRP7A 3'UTR 0.09 TCGA-IG-A3Y9-01 22 50217944 50217944 G A BRD1 Missense_Mutation p.H8Y 0.32 tolerated(0.22) possibly_damaging(0.716) TCGA-IG-A3Y9-01 2 103141509 103141509 C G SLC9A4 Silent p.L615L 0.09 TCGA-IG-A3Y9-01 2 10799328 10799328 C G NOL10 Missense_Mutation p.L242F 0.11 deleterious(0) probably_damaging(0.925) TCGA-IG-A3Y9-01 2 136743200 136743200 G T DARS 5'UTR 0.14 TCGA-IG-A3Y9-01 2 141143523 141143523 G T LRP1B Silent p.P3490P 0.26 TCGA-IG-A3Y9-01 2 165561596 165561596 C G COBLL1 Missense_Mutation p.R339T 0.14 deleterious(0.02) benign(0.281) TCGA-IG-A3Y9-01 2 166788351 166788351 C G TTC21B Missense_Mutation p.E271Q 0.12 tolerated(0.65) benign(0.091) TCGA-IG-A3Y9-01 2 168101829 168101829 A G XIRP2 Silent p.V1309V 0.12 TCGA-IG-A3Y9-01 2 169870832 169870832 C G ABCB11 Missense_Mutation p.R44T 0.10 tolerated(0.42) benign(0.044) TCGA-IG-A3Y9-01 2 178086396 178086396 G T HNRNPA3 3'Flank 0.23 TCGA-IG-A3Y9-01 2 178417447 178417447 G A TTC30B Silent p.T15T 0.23 TCGA-IG-A3Y9-01 2 179197727 179197727 G C OSBPL6 Missense_Mutation p.E206Q 0.07 tolerated(0.26) benign(0.395) TCGA-IG-A3Y9-01 2 179425563 179425563 C T TTN Silent p.L28432L 0.09 TCGA-IG-A3Y9-01 2 1795777 1795777 A T MYT1L Missense_Mutation p.D1139E 0.22 tolerated(1) benign(0.004) TCGA-IG-A3Y9-01 2 196912149 196912149 T C DNAH7 Missense_Mutation p.T109A 0.15 tolerated(0.27) benign(0.004) TCGA-IG-A3Y9-01 2 204600220 204600220 C G CD28 3'UTR 0.07 TCGA-IG-A3Y9-01 2 206660251 206660251 C T NRP2 3'UTR 0.15 TCGA-IG-A3Y9-01 2 224463090 224463090 G A SCG2 Missense_Mutation p.S304L 0.14 tolerated(0.06) probably_damaging(1) TCGA-IG-A3Y9-01 2 227700798 227700798 G C RHBDD1 5'UTR 0.07 TCGA-IG-A3Y9-01 2 227896937 227896937 C G COL4A4 Missense_Mutation p.E1211D 0.13 unknown(0) TCGA-IG-A3Y9-01 2 232137712 232137712 G A ARMC9 Missense_Mutation p.E419K 0.15 tolerated(0.55) benign(0.175) TCGA-IG-A3Y9-01 2 38973295 38973295 G C SRSF7 Missense_Mutation p.P218R 0.11 deleterious(0.01) unknown(0) TCGA-IG-A3Y9-01 2 44065707 44065707 G A ABCG5 Silent p.L38L 0.10 TCGA-IG-A3Y9-01 2 55544775 55544775 G C CCDC88A Missense_Mutation p.S1175C 0.11 deleterious(0.01) benign(0.321) TCGA-IG-A3Y9-01 2 61765363 61765363 G C XPO1 5'UTR 0.15 TCGA-IG-A3Y9-01 2 68384711 68384711 G C WDR92 5'Flank 0.05 TCGA-IG-A3Y9-01 2 68406383 68406383 G A PPP3R1 3'UTR 0.11 TCGA-IG-A3Y9-01 2 71036285 71036285 G T CLEC4F 3'UTR 0.21 TCGA-IG-A3Y9-01 2 74657797 74657797 C G RTKN Missense_Mutation p.D107H 0.08 tolerated(0.07) possibly_damaging(0.738) TCGA-IG-A3Y9-01 2 77746526 77746526 G A LRRTM4 Missense_Mutation p.R157W 0.10 deleterious(0) probably_damaging(1) TCGA-IG-A3Y9-01 2 79349978 79349978 G A REG1A Nonsense_Mutation p.W111* 0.11 TCGA-IG-A3Y9-01 2 88748296 88748296 A G FOXI3 RNA 0.11 TCGA-IG-A3Y9-01 2 8997283 8997283 A G MBOAT2 3'UTR 0.07 TCGA-IG-A3Y9-01 2 97475504 97475504 G T CNNM4 3'UTR 0.15 TCGA-IG-A3Y9-01 3 118753547 118753547 G T IGSF11 5'UTR 0.50 TCGA-IG-A3Y9-01 3 124132352 124132352 G C KALRN Missense_Mutation p.L792F 0.11 deleterious(0) probably_damaging(0.986) TCGA-IG-A3Y9-01 3 125032181 125032181 G C ZNF148 Missense_Mutation p.Q102E 0.05 tolerated(0.38) benign(0.237) TCGA-IG-A3Y9-01 3 128182345 128182345 G C DNAJB8 5'UTR 0.21 TCGA-IG-A3Y9-01 3 129324787 129324787 G T PLXND1 Missense_Mutation p.F232L 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-IG-A3Y9-01 3 133664007 133664007 C G SLCO2A1 Missense_Mutation p.E465Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-IG-A3Y9-01 3 138121105 138121105 C T MRAS Silent p.I207I 0.19 TCGA-IG-A3Y9-01 3 142224118 142224118 C G ATR Missense_Mutation p.D1687H 0.08 deleterious(0) probably_damaging(1) TCGA-IG-A3Y9-01 3 150176626 150176626 C T TSC22D2 3'UTR 0.11 TCGA-IG-A3Y9-01 3 152132747 152132747 G C MBNL1 Missense_Mutation p.E64D 0.04 tolerated(0.17) probably_damaging(0.995) TCGA-IG-A3Y9-01 3 157289013 157289013 C G C3orf55 Missense_Mutation p.S44C 0.14 deleterious(0) probably_damaging(0.991) TCGA-IG-A3Y9-01 3 190367130 190367130 C G IL1RAP Intron 0.17 TCGA-IG-A3Y9-01 3 191087747 191087747 G C CCDC50 Missense_Mutation p.E124Q 0.06 deleterious(0) probably_damaging(0.999) TCGA-IG-A3Y9-01 3 195512668 195512668 G C MUC4 Nonsense_Mutation p.S1928* 0.04 TCGA-IG-A3Y9-01 3 37033360 37033360 G C EPM2AIP1 Silent p.V403V 0.09 TCGA-IG-A3Y9-01 3 52876944 52876944 G C TMEM110-MUSTN1 Silent p.L217L 0.07 TCGA-IG-A3Y9-01 3 57399535 57399535 C T DNAH12 Silent p.L1967L 0.12 TCGA-IG-A3Y9-01 4 107246215 107246215 G C AIMP1 Missense_Mutation p.E41Q 0.21 tolerated(0.32) probably_damaging(0.999) TCGA-IG-A3Y9-01 4 110745646 110745646 C G GAR1 3'UTR 0.09 TCGA-IG-A3Y9-01 4 178352704 178352704 C T AGA 3'UTR 0.17 TCGA-IG-A3Y9-01 4 186456520 186456520 G A PDLIM3 Silent p.F23F 0.12 TCGA-IG-A3Y9-01 4 26744169 26744169 C T TBC1D19 Nonsense_Mutation p.Q423* 0.18 TCGA-IG-A3Y9-01 4 70896442 70896442 T G HTN3 Intron 0.15 TCGA-IG-A3Y9-01 4 8242607 8242607 C T SH3TC1 Silent p.N1312N 0.15 TCGA-IG-A3Y9-01 4 96222865 96222865 G A UNC5C Missense_Mutation p.R128C 0.11 deleterious(0) probably_damaging(0.995) TCGA-IG-A3Y9-01 5 102488444 102488444 C A PPIP5K2 Missense_Mutation p.S374Y 0.16 tolerated(0.2) benign(0.43) TCGA-IG-A3Y9-01 5 138677596 138677596 G A PAIP2 5'Flank 0.05 TCGA-IG-A3Y9-01 5 140174599 140174599 C G PCDHA2 Missense_Mutation p.S17W 0.14 tolerated_low_confidence(0.21) benign(0.024) TCGA-IG-A3Y9-01 5 140431453 140431453 T C PCDHB1 Missense_Mutation p.F133S 0.18 deleterious(0) probably_damaging(0.997) TCGA-IG-A3Y9-01 5 140530592 140530592 G A PCDHB6 Missense_Mutation p.E252K 0.19 deleterious(0) probably_damaging(1) TCGA-IG-A3Y9-01 5 143586365 143586365 A C KCTD16 Missense_Mutation p.N30H 0.09 deleterious(0) probably_damaging(0.999) TCGA-IG-A3Y9-01 5 160114974 160114974 C G ATP10B Silent p.G36G 0.07 TCGA-IG-A3Y9-01 5 19473394 19473394 G T CDH18 Missense_Mutation p.P772T 0.25 deleterious(0) probably_damaging(0.999) TCGA-IG-A3Y9-01 5 36687911 36687911 C T SLC1A3 3'UTR 0.12 TCGA-IG-A3Y9-01 5 36975895 36975895 A G NIPBL Missense_Mutation p.I296V 0.14 deleterious_low_confidence(0) benign(0.025) TCGA-IG-A3Y9-01 5 45260968 45260968 C G HCN1 3'UTR 0.11 TCGA-IG-A3Y9-01 5 69372363 69372363 C G SMN2 Missense_Mutation p.Q284E 0.17 deleterious(0.05) benign(0.002) TCGA-IG-A3Y9-01 5 76932724 76932724 G A OTP Silent p.F123F 0.07 TCGA-IG-A3Y9-01 5 79950579 79950579 C G MSH3 Silent p.L11L 0.11 TCGA-IG-A3Y9-01 5 88017557 88017557 C T MEF2C 3'UTR 0.18 TCGA-IG-A3Y9-01 6 107391610 107391610 G C BEND3 Nonsense_Mutation p.S262* 0.10 TCGA-IG-A3Y9-01 6 112443245 112443245 C G LAMA4 Missense_Mutation p.E1483Q 0.12 tolerated(0.28) benign(0.022) TCGA-IG-A3Y9-01 6 112496650 112496650 C T LAMA4 Missense_Mutation p.E408K 0.10 tolerated(0.67) benign(0.007) TCGA-IG-A3Y9-01 6 152644662 152644662 C G SYNE1 Missense_Mutation p.E5290Q 0.12 benign(0.004) TCGA-IG-A3Y9-01 6 155153402 155153402 C A SCAF8 Missense_Mutation p.L897M 0.07 deleterious_low_confidence(0.03) benign(0.343) TCGA-IG-A3Y9-01 6 160196340 160196340 G A ACAT2 Missense_Mutation p.R210K 0.11 tolerated(0.28) benign(0.005) TCGA-IG-A3Y9-01 6 28963076 28963076 G C ZNF311 Nonsense_Mutation p.S568* 0.15 TCGA-IG-A3Y9-01 6 31833354 31833354 C G SLC44A4 Missense_Mutation p.C536S 0.13 deleterious(0.03) probably_damaging(0.955) TCGA-IG-A3Y9-01 6 33246327 33246327 G C B3GALT4 Missense_Mutation p.Q377H 0.08 tolerated_low_confidence(1) benign(0) TCGA-IG-A3Y9-01 6 36652282 36652282 G C CDKN1A Missense_Mutation p.G135A 0.07 tolerated(0.08) benign(0.197) TCGA-IG-A3Y9-01 6 41739196 41739196 C T FRS3 Missense_Mutation p.E214K 0.04 tolerated(0.08) probably_damaging(0.947) TCGA-IG-A3Y9-01 6 42980987 42980987 C G MEA1 Missense_Mutation p.E57Q 0.13 deleterious(0.04) possibly_damaging(0.673) TCGA-IG-A3Y9-01 6 53362976 53362976 T - GCLC 3'UTR 0.09 TCGA-IG-A3Y9-01 6 56324949 56324949 C G DST Missense_Mutation p.R5078T 0.10 possibly_damaging(0.755) TCGA-IG-A3Y9-01 6 83947511 83947511 C G ME1 Missense_Mutation p.L317F 0.10 deleterious(0) possibly_damaging(0.647) TCGA-IG-A3Y9-01 6 90402667 90402667 G C MDN1 Missense_Mutation p.S3361C 0.14 possibly_damaging(0.853) TCGA-IG-A3Y9-01 7 107789071 107789071 C G NRCAM 3'UTR 0.15 TCGA-IG-A3Y9-01 7 129832592 129832592 C G TMEM209 Missense_Mutation p.L215F 0.19 tolerated(0.16) benign(0.093) TCGA-IG-A3Y9-01 7 134346821 134346821 C G BPGM Missense_Mutation p.H188D 0.06 deleterious(0) possibly_damaging(0.869) TCGA-IG-A3Y9-01 7 135386446 135386446 C G SLC13A4 Missense_Mutation p.K231N 0.14 tolerated(0.34) benign(0.004) TCGA-IG-A3Y9-01 7 141177055 141177055 C G TMEM178B 3'UTR 0.11 TCGA-IG-A3Y9-01 7 151859780 151859780 C T KMT2C Missense_Mutation p.D3628N 0.19 possibly_damaging(0.816) TCGA-IG-A3Y9-01 7 1608892 1608892 G A PSMG3 Silent p.F28F 0.12 TCGA-IG-A3Y9-01 7 23826213 23826213 C G STK31 Missense_Mutation p.D787E 0.35 tolerated(1) benign(0) TCGA-IG-A3Y9-01 7 2472467 2472467 G A CHST12 Missense_Mutation p.D65N 0.09 tolerated(0.24) benign(0.011) TCGA-IG-A3Y9-01 7 27236841 27236841 C G HOXA13 3'UTR 0.12 TCGA-IG-A3Y9-01 7 38259194 38259194 G C STARD3NL Missense_Mutation p.E194D 0.13 tolerated(0.28) benign(0.006) TCGA-IG-A3Y9-01 7 50198667 50198667 G T C7orf72 Missense_Mutation p.D407Y 0.39 deleterious(0.04) probably_damaging(0.957) TCGA-IG-A3Y9-01 7 5396810 5396810 G A TNRC18 Missense_Mutation p.S1644L 0.10 possibly_damaging(0.479) TCGA-IG-A3Y9-01 7 54610260 54610260 C T VSTM2A 5'UTR 0.08 TCGA-IG-A3Y9-01 7 65617257 65617257 C A CRCP Silent p.V120V 0.12 TCGA-IG-A3Y9-01 7 65617267 65617267 C T CRCP Silent p.L124L 0.09 TCGA-IG-A3Y9-01 7 8127833 8127833 T - GLCCI1 3'UTR 0.48 TCGA-IG-A3Y9-01 7 88963860 88963860 G C ZNF804B Missense_Mutation p.D522H 0.14 tolerated(0.57) benign(0.025) TCGA-IG-A3Y9-01 8 101270645 101270645 C T RNF19A 3'UTR 0.14 TCGA-IG-A3Y9-01 8 133759306 133759306 G C TMEM71 Intron 0.11 TCGA-IG-A3Y9-01 8 144996792 144996792 C T PLEC Silent p.E2572E 0.19 TCGA-IG-A3Y9-01 8 25364100 25364100 C T CDCA2 Missense_Mutation p.R640C 0.22 deleterious(0.01) benign(0.305) TCGA-IG-A3Y9-01 8 3889611 3889611 G T CSMD1 Missense_Mutation p.S142R 0.21 probably_damaging(0.998) TCGA-IG-A3Y9-01 8 69434053 69434053 C T C8orf34 Missense_Mutation p.S262F 0.07 deleterious(0.02) probably_damaging(0.968) TCGA-IG-A3Y9-01 8 97622686 97622686 C T SDC2 3'UTR 0.06 TCGA-IG-A3Y9-01 8 99076803 99076803 G C C8orf47 5'UTR 0.05 TCGA-IG-A3Y9-01 9 102713413 102713413 G A STX17 Silent p.L87L 0.19 TCGA-IG-A3Y9-01 9 119463567 119463567 G A TRIM32 3'UTR 0.12 TCGA-IG-A3Y9-01 9 139404376 139404377 - A NOTCH1 Frame_Shift_Ins p.N927Qfs*17 0.23 TCGA-IG-A3Y9-01 9 35547582 35547582 C T RUSC2 Missense_Mutation p.S355F 0.29 deleterious(0) possibly_damaging(0.828) TCGA-IG-A3Y9-01 9 36112352 36112352 G A RECK Missense_Mutation p.G647R 0.28 deleterious(0) probably_damaging(1) TCGA-IG-A3Y9-01 9 36169685 36169685 G T CCIN Missense_Mutation p.M62I 0.12 tolerated(0.71) benign(0.001) TCGA-IG-A3Y9-01 9 37888332 37888332 C T SLC25A51 Silent p.L72L 0.28 TCGA-IG-A3Y9-01 9 4697838 4697838 G C CDC37L1 Missense_Mutation p.D236H 0.12 deleterious(0) probably_damaging(0.994) TCGA-IG-A3Y9-01 X 107400267 107400267 C T COL4A6 Missense_Mutation p.R1680Q 0.28 benign(0.101) TCGA-IG-A3Y9-01 X 112058657 112058657 G A AMOT Missense_Mutation p.L441F 0.11 unknown(0) TCGA-IG-A3Y9-01 X 155227398 155227398 C T IL9R 5'UTR 0.12 TCGA-IG-A3Y9-01 X 17169130 17169130 G C REPS2 3'UTR 0.28 TCGA-IG-A3Y9-01 X 18221839 18221839 A C BEND2 Missense_Mutation p.F230C 0.17 tolerated(0.27) benign(0.002) TCGA-IG-A3Y9-01 X 41206955 41206955 G C DDX3X Missense_Mutation p.D658H 0.30 deleterious(0) unknown(0) TCGA-IG-A3Y9-01 X 63445264 63445264 C A ASB12 Missense_Mutation p.L89F 0.33 deleterious(0.01) probably_damaging(0.985) TCGA-IG-A3Y9-01 X 69478523 69478523 G A P2RY4 Missense_Mutation p.R318C 0.32 tolerated(0.15) benign(0.024) TCGA-IG-A3Y9-01 X 70471431 70471431 C T ZMYM3 Missense_Mutation p.A230T 0.50 deleterious_low_confidence(0.05) benign(0.014) TCGA-IG-A3Y9-01 X 73065478 73065478 G C XIST RNA 0.09 TCGA-IG-A3Y9-01 X 73749129 73749129 C G SLC16A2 Missense_Mutation p.L418V 0.09 tolerated(0.11) benign(0.264) TCGA-IG-A3Y9-01 X 80001094 80001094 C G BRWD3 Missense_Mutation p.D189H 0.19 deleterious(0) probably_damaging(0.995) TCGA-IG-A3Y9-01 X 8997386 8997386 C G FAM9B Missense_Mutation p.E119Q 0.13 tolerated(0.33) possibly_damaging(0.537) TCGA-IG-A3Y9-01 X 96502803 96502803 G C DIAPH2 Missense_Mutation p.E937Q 0.18 tolerated(0.36) possibly_damaging(0.475) TCGA-IG-A3YA-01 10 103771512 103771512 G T C10orf76 Missense_Mutation p.Q267K 0.17 tolerated(0.32) benign(0.01) TCGA-IG-A3YA-01 10 124806738 124806738 C T ACADSB Missense_Mutation p.A305V 0.07 deleterious(0) probably_damaging(0.988) TCGA-IG-A3YA-01 10 27459382 27459382 T C MASTL Silent p.S498S 0.12 TCGA-IG-A3YA-01 10 49440312 49440312 A C FRMPD2 Nonsense_Mutation p.Y338* 0.22 TCGA-IG-A3YA-01 11 103780276 103780276 A G PDGFD 3'UTR 0.13 TCGA-IG-A3YA-01 11 104762081 104762081 G T CASP12 Silent p.S161S 0.13 TCGA-IG-A3YA-01 11 123989252 123989252 A G VWA5A Missense_Mutation p.D161G 0.09 tolerated(0.48) benign(0.001) TCGA-IG-A3YA-01 11 31112986 31112986 C A DCDC1 Missense_Mutation p.A731S 0.05 tolerated(0.41) benign(0.193) TCGA-IG-A3YA-01 11 57995724 57995724 G A OR10Q1 Silent p.S208S 0.08 TCGA-IG-A3YA-01 11 63276016 63276016 C A LGALS12 Intron 0.07 TCGA-IG-A3YA-01 11 70009403 70009403 C T ANO1 Missense_Mutation p.P636L 0.15 deleterious(0) probably_damaging(1) TCGA-IG-A3YA-01 11 88045627 88045627 G A CTSC Silent p.T138T 0.12 TCGA-IG-A3YA-01 12 11183984 11183984 G A TAS2R31 5'UTR 0.27 TCGA-IG-A3YA-01 12 117703277 117703277 G A NOS1 Silent p.T660T 0.07 TCGA-IG-A3YA-01 12 120580662 120580662 T A GCN1L1 Missense_Mutation p.E1860V 0.07 probably_damaging(0.926) TCGA-IG-A3YA-01 12 52649170 52649170 C T KRT121P RNA 0.09 TCGA-IG-A3YA-01 12 58204170 58204170 G T AVIL Silent p.I241I 0.19 TCGA-IG-A3YA-01 12 6707388 6707388 C T CHD4 Silent p.Q562Q 0.12 TCGA-IG-A3YA-01 12 86373140 86373140 C A MGAT4C Missense_Mutation p.C455F 0.11 deleterious(0) probably_damaging(0.999) TCGA-IG-A3YA-01 14 101491915 101491915 G A MIR1197 RNA 0.08 TCGA-IG-A3YA-01 14 23310779 23310779 C T MMP14 Missense_Mutation p.A63V 0.18 deleterious(0.01) benign(0.342) TCGA-IG-A3YA-01 14 23886458 23886458 G A MYH7 Missense_Mutation p.R1475C 0.23 deleterious(0.01) possibly_damaging(0.654) TCGA-IG-A3YA-01 14 52899183 52899183 C A TXNDC16 Missense_Mutation p.V773L 0.13 tolerated(0.49) benign(0.001) TCGA-IG-A3YA-01 14 70826373 70826373 A G COX16 5'UTR 0.21 TCGA-IG-A3YA-01 14 80327777 80327777 G A NRXN3 Intron 0.27 TCGA-IG-A3YA-01 15 33025546 33025546 A T GREM1 3'UTR 0.24 TCGA-IG-A3YA-01 15 48808454 48808454 C A FBN1 Missense_Mutation p.G418V 0.12 benign(0) TCGA-IG-A3YA-01 15 59189346 59189346 C G SLTM Missense_Mutation p.D399H 0.09 deleterious(0) unknown(0) TCGA-IG-A3YA-01 15 91420169 91420169 C T FURIN Missense_Mutation p.A139V 0.09 tolerated(0.1) benign(0.006) TCGA-IG-A3YA-01 15 94942290 94942290 C T MCTP2 Missense_Mutation p.P630L 0.09 deleterious(0.03) possibly_damaging(0.475) TCGA-IG-A3YA-01 16 15733071 15733071 G T KIAA0430 Missense_Mutation p.T7N 0.15 deleterious_low_confidence(0.04) benign(0.169) TCGA-IG-A3YA-01 16 2905760 2905760 C G PRSS22 Missense_Mutation p.W125S 0.17 tolerated(0.14) benign(0.068) TCGA-IG-A3YA-01 16 56678679 56678679 A T MT1A 3'Flank 0.14 TCGA-IG-A3YA-01 17 10206736 10206736 C T MYH13 Missense_Mutation p.R1849H 0.11 deleterious(0) probably_damaging(0.997) TCGA-IG-A3YA-01 17 27002030 27002030 G T SUPT6H Missense_Mutation p.D130Y 0.15 deleterious(0) unknown(0) TCGA-IG-A3YA-01 17 27209414 27209414 C T FLOT2 Missense_Mutation p.V174M 0.11 tolerated(0.09) benign(0.067) TCGA-IG-A3YA-01 17 30815527 30815527 G T CDK5R1 Missense_Mutation p.D297Y 0.16 deleterious(0) possibly_damaging(0.642) TCGA-IG-A3YA-01 17 38910113 38910113 T A KRT25 Missense_Mutation p.E223V 0.13 deleterious(0) possibly_damaging(0.904) TCGA-IG-A3YA-01 17 39538436 39538436 G A KRT34 Silent p.C63C 0.11 TCGA-IG-A3YA-01 17 7127680 7127680 G A ACADVL Missense_Mutation p.V548I 0.11 tolerated(0.08) benign(0.019) TCGA-IG-A3YA-01 17 74071023 74071023 G A GALR2 Missense_Mutation p.G20D 0.17 tolerated(0.14) benign(0.123) TCGA-IG-A3YA-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.29 tolerated(0.11) benign(0.308) TCGA-IG-A3YA-01 17 80115510 80115510 C T CCDC57 3'UTR 0.12 TCGA-IG-A3YA-01 18 13646376 13646376 T A LDLRAD4 3'UTR 0.50 TCGA-IG-A3YA-01 18 20596862 20596862 G T RBBP8 Missense_Mutation p.G810V 0.17 deleterious(0) probably_damaging(0.965) TCGA-IG-A3YA-01 19 2328428 2328428 T A LSM7 Missense_Mutation p.I19F 0.16 deleterious(0.01) possibly_damaging(0.493) TCGA-IG-A3YA-01 19 2328429 2328429 G T LSM7 Nonsense_Mutation p.Y18* 0.16 TCGA-IG-A3YA-01 19 30936232 30936232 T C ZNF536 Missense_Mutation p.V588A 0.16 tolerated(1) benign(0.001) TCGA-IG-A3YA-01 19 36832184 36832184 T C ZFP14 Missense_Mutation p.I182V 0.24 tolerated(0.47) possibly_damaging(0.593) TCGA-IG-A3YA-01 19 51391278 51391278 C A KLKP1 RNA 0.17 TCGA-IG-A3YA-01 19 54238132 54238132 C A MIR518D RNA 0.09 TCGA-IG-A3YA-01 19 9063245 9063245 T C MUC16 Silent p.G8067G 0.11 TCGA-IG-A3YA-01 1 102270448 102270448 A T OLFM3 Silent p.T241T 0.20 TCGA-IG-A3YA-01 1 117142808 117142808 A T IGSF3 Nonsense_Mutation p.L615* 0.15 TCGA-IG-A3YA-01 1 149916658 149916658 C T OTUD7B Missense_Mutation p.G544S 0.17 tolerated(0.18) benign(0.103) TCGA-IG-A3YA-01 1 152282420 152282420 C G FLG Missense_Mutation p.E1648Q 0.12 benign(0.403) TCGA-IG-A3YA-01 1 20998480 20998480 G A KIF17 Silent p.G891G 0.12 TCGA-IG-A3YA-01 1 229730759 229730759 G A TAF5L Missense_Mutation p.A352V 0.12 tolerated(0.12) benign(0.008) TCGA-IG-A3YA-01 1 248616580 248616580 C T OR2T2 Missense_Mutation p.T161I 0.21 deleterious(0.03) possibly_damaging(0.756) TCGA-IG-A3YA-01 1 32196688 32196688 C T BAI2 Missense_Mutation p.G1365S 0.31 tolerated(0.37) benign(0.001) TCGA-IG-A3YA-01 1 38158196 38158196 G A CDCA8 5'UTR 0.13 TCGA-IG-A3YA-01 1 52889301 52889301 T - ZCCHC11 3'UTR 0.10 TCGA-IG-A3YA-01 1 53930386 53930386 C A DMRTB1 Missense_Mutation p.P276Q 0.08 tolerated(0.27) possibly_damaging(0.881) TCGA-IG-A3YA-01 20 3146868 3146868 G T LZTS3 Missense_Mutation p.L200M 0.21 tolerated(0.11) probably_damaging(0.969) TCGA-IG-A3YA-01 20 43571821 43571821 G A TOMM34 Missense_Mutation p.L287F 0.08 deleterious(0.01) probably_damaging(0.998) TCGA-IG-A3YA-01 20 57829715 57829715 C A ZNF831 Missense_Mutation p.L1651M 0.30 deleterious(0) probably_damaging(0.997) TCGA-IG-A3YA-01 22 40719728 40719728 T G TNRC6B 3'UTR 0.34 TCGA-IG-A3YA-01 2 11351835 11351835 G A ROCK2 Silent p.I725I 0.13 TCGA-IG-A3YA-01 2 125232348 125232348 A T CNTNAP5 Missense_Mutation p.K317N 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-IG-A3YA-01 2 12881283 12881283 C A TRIB2 3'UTR 0.09 TCGA-IG-A3YA-01 2 149243434 149243434 A G MBD5 Missense_Mutation p.Q990R 0.14 tolerated(0.07) unknown(0) TCGA-IG-A3YA-01 2 179400859 179400859 C G TTN Missense_Mutation p.D33539H 0.08 TCGA-IG-A3YA-01 2 18765855 18765855 G A NT5C1B Silent p.D276D 0.05 TCGA-IG-A3YA-01 2 220083133 220083133 A T ABCB6 Missense_Mutation p.L88Q 0.12 deleterious(0.04) possibly_damaging(0.866) TCGA-IG-A3YA-01 2 26359719 26359719 G A RAB10 3'UTR 0.13 TCGA-IG-A3YA-01 2 31605935 31605935 T G XDH Missense_Mutation p.T324P 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-IG-A3YA-01 2 42588509 42588509 C A COX7A2L 5'UTR 0.25 TCGA-IG-A3YA-01 2 80875525 80875525 C A CTNNA2 3'UTR 0.11 TCGA-IG-A3YA-01 3 135869879 135869879 T C MSL2 3'UTR 0.12 TCGA-IG-A3YA-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.36 deleterious(0.02) probably_damaging(0.959) TCGA-IG-A3YA-01 3 36873577 36873577 C G TRANK1 Missense_Mutation p.E2455D 0.12 tolerated(0.06) benign(0.006) TCGA-IG-A3YA-01 3 44959625 44959625 C T TGM4 3'Flank 0.10 TCGA-IG-A3YA-01 4 126371928 126371928 C T FAT4 Nonsense_Mutation p.Q3253* 0.12 TCGA-IG-A3YA-01 4 165891024 165891024 C T TRIM61 Nonsense_Mutation p.W44* 0.06 TCGA-IG-A3YA-01 4 187079298 187079298 C T FAM149A Intron 0.38 TCGA-IG-A3YA-01 5 150275679 150275679 T C ZNF300 Missense_Mutation p.I390M 0.07 deleterious(0) probably_damaging(0.999) TCGA-IG-A3YA-01 6 116574350 116574350 G A TSPYL4 Silent p.D274D 0.08 TCGA-IG-A3YA-01 6 32017091 32017091 T C TNXB 5'Flank 0.14 TCGA-IG-A3YA-01 6 33374195 33374195 C T KIFC1 Missense_Mutation p.R587W 0.19 deleterious(0) benign(0.393) TCGA-IG-A3YA-01 7 119914701 119914701 G A KCND2 Silent p.V5V 0.11 TCGA-IG-A3YA-01 7 126173452 126173452 T G GRM8 Missense_Mutation p.S662R 0.10 tolerated(0.05) probably_damaging(0.999) TCGA-IG-A3YA-01 7 128641132 128641132 C T TNPO3 Missense_Mutation p.A285T 0.13 tolerated(0.12) benign(0.347) TCGA-IG-A3YA-01 7 148951091 148951091 G A ZNF212 Missense_Mutation p.R358Q 0.10 tolerated(0.74) benign(0.007) TCGA-IG-A3YA-01 7 27202906 27202906 A G HOXA9 3'UTR 0.09 TCGA-IG-A3YA-01 7 34768375 34768375 G T NPSR1 Intron 0.30 TCGA-IG-A3YA-01 7 86567530 86567530 T C KIAA1324L Missense_Mutation p.E334G 0.27 tolerated(0.26) benign(0.007) TCGA-IG-A3YA-01 8 146015762 146015762 C A RPL8 Missense_Mutation p.R198L 0.05 tolerated(0.09) benign(0.139) TCGA-IG-A3YA-01 8 22442854 22442854 C A PDLIM2 Missense_Mutation p.S411Y 0.07 deleterious(0.02) probably_damaging(0.916) TCGA-IG-A3YA-01 8 26721737 26721737 G A ADRA1A Silent p.S250S 0.10 TCGA-IG-A3YA-01 8 27168552 27168552 G C TRIM35 Silent p.A67A 0.07 TCGA-IG-A3YA-01 8 57073749 57073749 C T PLAG1 3'UTR 0.14 TCGA-IG-A3YA-01 8 98289607 98289607 C A TSPYL5 Missense_Mutation p.A156S 0.13 tolerated(0.68) benign(0.1) TCGA-IG-A3YA-01 9 123216129 123216129 G A CDK5RAP2 Missense_Mutation p.R800W 0.23 tolerated(0.22) probably_damaging(0.973) TCGA-IG-A3YA-01 9 131186871 131186871 C T CERCAM Silent p.F248F 0.12 TCGA-IG-A3YA-01 9 79985362 79985362 C T VPS13A Silent p.T2925T 0.13 TCGA-IG-A3YA-01 X 100656624 100656624 T C GLA Silent p.A181A 0.08 TCGA-IG-A3YA-01 X 112058876 112058876 G A AMOT Missense_Mutation p.R368C 0.30 unknown(0) TCGA-IG-A3YA-01 X 131761460 131761460 C A HS6ST2 3'Flank 0.12 TCGA-IG-A3YA-01 X 13621508 13621508 G T EGFL6 Missense_Mutation p.C158F 0.10 deleterious(0) probably_damaging(0.994) TCGA-IG-A3YA-01 X 37027957 37027957 G A FAM47C Missense_Mutation p.D492N 0.23 tolerated_low_confidence(0.09) benign(0.348) TCGA-IG-A3YA-01 X 79940990 79940990 C G BRWD3 Missense_Mutation p.E1351Q 0.13 tolerated_low_confidence(0.32) benign(0.054) TCGA-IG-A3YA-01 X 80371790 80371790 G T HMGN5 Silent p.A60A 0.10 TCGA-IG-A3YA-01 X 84362459 84362459 G C SATL1 Missense_Mutation p.L506V 0.31 tolerated(0.33) probably_damaging(0.91) TCGA-IG-A3YB-01 10 127491497 127491497 G T UROS Intron 0.48 TCGA-IG-A3YB-01 10 18155626 18155626 C T MRC1 Missense_Mutation p.T640M 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-IG-A3YB-01 10 37507906 37507906 A T ANKRD30A Splice_Site p.X1034_splice 0.40 TCGA-IG-A3YB-01 10 60573752 60573752 C T BICC1 Intron 0.63 TCGA-IG-A3YB-01 11 120317153 120317153 C T ARHGEF12 Missense_Mutation p.H463Y 0.19 deleterious(0.01) benign(0.317) TCGA-IG-A3YB-01 11 121000704 121000704 C T TECTA Missense_Mutation p.R909C 0.13 tolerated(0.06) possibly_damaging(0.892) TCGA-IG-A3YB-01 11 2161524 2161524 C G IGF2 Translation_Start_Site p.M1? 0.49 deleterious_low_confidence(0) possibly_damaging(0.775) TCGA-IG-A3YB-01 11 3424158 3424158 C T TSSC2 RNA 0.06 TCGA-IG-A3YB-01 11 4510932 4510932 C T OR52K1 Missense_Mutation p.R268C 0.35 deleterious(0.04) benign(0.008) TCGA-IG-A3YB-01 11 47260399 47260400 GA - DDB2 Frame_Shift_Del 0.11 TCGA-IG-A3YB-01 11 60470906 60470906 C T MS4A8 Missense_Mutation p.T92M 0.14 tolerated(0.09) possibly_damaging(0.672) TCGA-IG-A3YB-01 11 63998025 63998027 CTT - DNAJC4 5'UTR 0.33 TCGA-IG-A3YB-01 11 6423342 6423342 C T APBB1 Missense_Mutation p.R451H 0.32 deleterious(0) probably_damaging(0.949) TCGA-IG-A3YB-01 11 68174018 68174018 G - LRP5 Frame_Shift_Del p.C612Afs*23 0.21 TCGA-IG-A3YB-01 11 93464336 93464336 T C KIAA1731 3'Flank 0.30 TCGA-IG-A3YB-01 12 2909017 2909017 T C FKBP4 Missense_Mutation p.Y225H 0.16 deleterious(0.01) possibly_damaging(0.614) TCGA-IG-A3YB-01 12 46753241 46753241 C T SLC38A2 3'UTR 0.40 TCGA-IG-A3YB-01 12 54757553 54757553 A C GPR84 Missense_Mutation p.V28G 0.69 deleterious(0.01) benign(0.046) TCGA-IG-A3YB-01 12 81747054 81747054 G C PPFIA2 Missense_Mutation p.P613R 0.62 tolerated(0.09) benign(0.002) TCGA-IG-A3YB-01 13 114793367 114793367 C A RASA3 Silent p.G162G 0.43 TCGA-IG-A3YB-01 14 21487296 21487296 C T NDRG2 Missense_Mutation p.R247H 0.18 deleterious(0) probably_damaging(0.995) TCGA-IG-A3YB-01 14 24031497 24031499 TTG - AP1G2 In_Frame_Del p.N543del 0.17 TCGA-IG-A3YB-01 14 24035498 24035498 C T AP1G2 Missense_Mutation p.V154M 0.29 deleterious(0.02) probably_damaging(0.953) TCGA-IG-A3YB-01 14 39532558 39532558 G A SEC23A Silent p.T456T 0.24 TCGA-IG-A3YB-01 14 60903487 60903487 T C C14orf39 3'UTR 0.26 TCGA-IG-A3YB-01 14 72939647 72939647 G A RGS6 Missense_Mutation p.V202I 0.11 deleterious(0) benign(0.338) TCGA-IG-A3YB-01 15 34525808 34525810 TTA - SLC12A6 3'UTR 0.52 TCGA-IG-A3YB-01 15 44092665 44092665 G A HYPK Intron 0.21 TCGA-IG-A3YB-01 15 59499600 59499600 C T LDHAL6B Missense_Mutation p.T154M 0.19 deleterious(0.02) probably_damaging(0.976) TCGA-IG-A3YB-01 15 78217292 78217292 G A RP11-114H24.7 3'Flank 0.43 TCGA-IG-A3YB-01 16 1402138 1402138 G A GNPTG Missense_Mutation p.V30M 0.39 deleterious(0) probably_damaging(0.992) TCGA-IG-A3YB-01 16 58577404 58577404 T G CNOT1 Intron 0.18 TCGA-IG-A3YB-01 16 70190707 70190707 C G PDPR Silent p.L855L 0.11 TCGA-IG-A3YB-01 16 78062008 78062008 G T CLEC3A Missense_Mutation p.K49N 0.25 tolerated(0.1) benign(0.009) TCGA-IG-A3YB-01 16 820093 820093 G A MSLNL Silent p.H964H 0.48 TCGA-IG-A3YB-01 16 89261646 89261646 C T CDH15 3'UTR 0.30 TCGA-IG-A3YB-01 17 26883215 26883215 G A PIGS Nonsense_Mutation p.R384* 0.12 TCGA-IG-A3YB-01 17 40321669 40321669 C G KCNH4 Silent p.G472G 0.65 TCGA-IG-A3YB-01 17 61671337 61671337 C T DCAF7 3'Flank 0.65 TCGA-IG-A3YB-01 17 7211849 7211849 A T EIF5A Intron 0.24 TCGA-IG-A3YB-01 17 73621887 73621887 C A RECQL5 3'Flank 0.15 TCGA-IG-A3YB-01 17 7578547 7578547 G - TP53 Frame_Shift_Del p.P128Lfs*42 0.41 TCGA-IG-A3YB-01 17 7658190 7658190 G A DNAH2 Intron 0.27 TCGA-IG-A3YB-01 17 7669692 7669692 C T DNAH2 Missense_Mutation p.R1190W 0.54 probably_damaging(0.945) TCGA-IG-A3YB-01 17 8658868 8658868 T C SPDYE4 Missense_Mutation p.Q152R 0.64 tolerated(0.1) benign(0.21) TCGA-IG-A3YB-01 18 32470965 32470965 G A DTNA 3'UTR 0.35 TCGA-IG-A3YB-01 19 10200373 10200373 T C C19orf66 Splice_Site p.X78_splice 0.51 TCGA-IG-A3YB-01 19 11032856 11032856 G A CARM1 3'UTR 0.20 TCGA-IG-A3YB-01 19 11354034 11354034 C T DOCK6 Missense_Mutation p.R429H 0.21 deleterious(0.04) benign(0.38) TCGA-IG-A3YB-01 19 15538262 15538262 G A WIZ Silent p.H204H 0.06 TCGA-IG-A3YB-01 19 16860996 16860996 C T NWD1 Silent p.L515L 0.41 TCGA-IG-A3YB-01 19 22018958 22018958 C T ZNF43 5'UTR 0.23 TCGA-IG-A3YB-01 19 41931756 41931756 A G B3GNT8 Missense_Mutation p.Y310H 0.45 deleterious(0) probably_damaging(0.999) TCGA-IG-A3YB-01 19 42730789 42730789 A G ZNF526 3'UTR 0.23 TCGA-IG-A3YB-01 19 43699171 43699171 C T PSG4 Missense_Mutation p.D322N 0.43 tolerated(0.63) benign(0) TCGA-IG-A3YB-01 19 47201016 47201016 C A PRKD2 Missense_Mutation p.V405F 0.22 deleterious(0) benign(0.184) TCGA-IG-A3YB-01 19 51633206 51633206 C T SIGLEC9 Intron 0.18 TCGA-IG-A3YB-01 19 56972059 56972059 A - ZNF667 Frame_Shift_Del p.G54Vfs*9 0.24 TCGA-IG-A3YB-01 19 8933377 8933377 G A ZNF558 5'UTR 0.27 TCGA-IG-A3YB-01 1 120162907 120162907 C A ZNF697 3'UTR 0.32 TCGA-IG-A3YB-01 1 1328774 1328781 ACCATGAG - CCNL2 Splice_Site p.X218_splice 0.43 TCGA-IG-A3YB-01 1 150524746 150524746 G A ADAMTSL4 5'UTR 0.55 TCGA-IG-A3YB-01 1 17319071 17319071 C T ATP13A2 Silent p.L585L 0.23 TCGA-IG-A3YB-01 1 175293656 175293656 C A TNR Splice_Site p.X1265_splice 0.20 TCGA-IG-A3YB-01 1 183219973 183219973 C T NMNAT2 3'UTR 0.23 TCGA-IG-A3YB-01 1 231472386 231472386 T C EXOC8 Missense_Mutation p.D369G 0.20 tolerated(0.43) benign(0) TCGA-IG-A3YB-01 1 233394198 233394198 G A PCNXL2 Silent p.Y470Y 0.52 TCGA-IG-A3YB-01 1 35480667 35480667 C T ZMYM6 Silent p.E175E 0.26 TCGA-IG-A3YB-01 1 41483479 41483479 A G SLFNL1 Missense_Mutation p.V262A 0.41 deleterious(0.03) probably_damaging(0.947) TCGA-IG-A3YB-01 1 75055150 75055150 T G C1orf173 Intron 0.38 TCGA-IG-A3YB-01 20 35396375 35396375 G T DSN1 Missense_Mutation p.F142L 0.65 tolerated(0.13) probably_damaging(0.999) TCGA-IG-A3YB-01 22 26164786 26164786 C T MYO18B Silent p.D301D 0.19 TCGA-IG-A3YB-01 2 136537813 136537813 G C UBXN4 Missense_Mutation p.G416R 0.25 deleterious(0.01) benign(0.23) TCGA-IG-A3YB-01 2 149633197 149633197 C T KIF5C Missense_Mutation p.P4L 0.72 tolerated(0.06) benign(0.008) TCGA-IG-A3YB-01 2 149840246 149840246 T A KIF5C Missense_Mutation p.I561K 0.80 deleterious(0.03) possibly_damaging(0.822) TCGA-IG-A3YB-01 2 152525591 152525591 C T NEB Missense_Mutation p.E1521K 0.24 benign(0.048) TCGA-IG-A3YB-01 2 166756357 166756357 G A TTC21B Nonsense_Mutation p.Q931* 0.22 TCGA-IG-A3YB-01 2 187615950 187615950 C G FAM171B Missense_Mutation p.Q272E 0.14 tolerated(0.31) benign(0.009) TCGA-IG-A3YB-01 2 197184302 197184302 C A HECW2 Nonsense_Mutation p.E438* 0.09 TCGA-IG-A3YB-01 2 210559188 210559188 A T MAP2 Missense_Mutation p.E765V 0.50 deleterious(0.02) probably_damaging(0.948) TCGA-IG-A3YB-01 2 42285555 42285555 G A PKDCC 3'UTR 0.35 TCGA-IG-A3YB-01 2 5839423 5839423 G C SOX11 3'UTR 0.41 TCGA-IG-A3YB-01 3 113676531 113676531 T A ZDHHC23 Intron 0.36 TCGA-IG-A3YB-01 3 128707650 128707650 G A KIAA1257 Missense_Mutation p.P125L 0.18 deleterious(0) probably_damaging(0.983) TCGA-IG-A3YB-01 3 142462342 142462342 T C TRPC1 Silent p.L115L 0.23 TCGA-IG-A3YB-01 3 152175980 152175980 A G MBNL1 Intron 0.40 TCGA-IG-A3YB-01 3 195509034 195509034 G C MUC4 Silent p.V3139V 0.33 TCGA-IG-A3YB-01 4 110650791 110650791 C T PLA2G12A Missense_Mutation p.E59K 0.22 tolerated(1) benign(0.012) TCGA-IG-A3YB-01 4 13590374 13590374 C A BOD1L1 Missense_Mutation p.G2751V 0.63 benign(0.101) TCGA-IG-A3YB-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.28 deleterious(0) probably_damaging(1) TCGA-IG-A3YB-01 4 1576058 1576058 C G RP11-1398P2.1 RNA 0.64 TCGA-IG-A3YB-01 4 24809937 24809937 G A CCDC149 3'UTR 0.37 TCGA-IG-A3YB-01 4 30724999 30725000 - GCA PCDH7 In_Frame_Ins p.Q653dup 0.43 TCGA-IG-A3YB-01 4 38775505 38775505 G C TLR10 Silent p.L569L 0.04 TCGA-IG-A3YB-01 4 38776722 38776722 G C TLR10 Missense_Mutation p.H164D 0.08 deleterious(0.03) benign(0.009) TCGA-IG-A3YB-01 4 43032468 43032468 C T GRXCR1 Nonsense_Mutation p.R262* 0.11 TCGA-IG-A3YB-01 4 48141032 48141032 G A TEC Silent p.L515L 0.29 TCGA-IG-A3YB-01 5 140236873 140236873 C T PCDHA10 Missense_Mutation p.R414C 0.62 deleterious_low_confidence(0.02) benign(0.344) TCGA-IG-A3YB-01 5 1403165 1403165 G T SLC6A3 Missense_Mutation p.H547N 0.24 tolerated(0.51) benign(0.002) TCGA-IG-A3YB-01 5 178541072 178541072 G C ADAMTS2 Silent p.L1144L 0.23 TCGA-IG-A3YB-01 5 71495635 71495635 C T MAP1B Silent p.S2151S 0.48 TCGA-IG-A3YB-01 6 119288068 119288068 C G FAM184A Missense_Mutation p.D989H 0.42 deleterious(0) probably_damaging(1) TCGA-IG-A3YB-01 6 137245224 137245248 CCTGGACCTTCCCGGGCTGGAAGGA - SLC35D3 Frame_Shift_Del p.W215Rfs*12 0.24 TCGA-IG-A3YB-01 6 26250521 26250522 - GAGCCCC HIST1H3F Frame_Shift_Ins p.F105Gfs*4 0.16 TCGA-IG-A3YB-01 6 31692792 31692792 C T C6orf25 Missense_Mutation p.R223C 0.50 tolerated_low_confidence(0.2) benign(0.002) TCGA-IG-A3YB-01 6 43305847 43305847 C G ZNF318 Missense_Mutation p.K1963N 0.33 benign(0.002) TCGA-IG-A3YB-01 6 43565542 43565542 G A POLH Missense_Mutation p.M200I 0.17 tolerated(0.09) benign(0.039) TCGA-IG-A3YB-01 6 90385858 90385858 T G MDN1 Missense_Mutation p.H4203P 0.26 possibly_damaging(0.642) TCGA-IG-A3YB-01 6 96662829 96662829 C A FUT9 3'UTR 0.27 TCGA-IG-A3YB-01 7 135406264 135406264 G A SLC13A4 Missense_Mutation p.S36L 0.37 tolerated(0.12) benign(0.407) TCGA-IG-A3YB-01 7 86274000 86274000 C T GRM3 5'UTR 0.13 TCGA-IG-A3YB-01 7 97481732 97481732 T C ASNS Missense_Mutation p.T509A 0.58 tolerated(0.16) benign(0.081) TCGA-IG-A3YB-01 8 113277777 113277777 C G CSMD3 Missense_Mutation p.R3184T 0.44 deleterious(0.03) probably_damaging(0.93) TCGA-IG-A3YB-01 8 53126769 53126769 T A ST18 Missense_Mutation p.T17S 0.29 tolerated(0.35) benign(0.01) TCGA-IG-A3YB-01 8 97345832 97345832 G C PTDSS1 3'UTR 0.38 TCGA-IG-A3YB-01 9 100618166 100618166 C G FOXE1 3'UTR 0.71 TCGA-IG-A3YB-01 9 113018831 113018831 G C TXN 5'UTR 0.50 TCGA-IG-A3YB-01 9 119188344 119188344 C A ASTN2 Missense_Mutation p.R1218L 0.13 deleterious(0.01) unknown(0) TCGA-IG-A3YB-01 9 131370264 131370264 G - SPTAN1 Frame_Shift_Del p.R1427Lfs*13 0.13 TCGA-IG-A3YB-01 9 139642865 139642865 C G LCN6 Missense_Mutation p.G24A 0.73 tolerated(0.94) probably_damaging(0.982) TCGA-IG-A3YB-01 9 32630449 32630449 C T TAF1L Missense_Mutation p.R1710K 0.64 tolerated_low_confidence(0.38) benign(0.062) TCGA-IG-A3YB-01 9 96938644 96938644 A T MIRLET7F1 RNA 0.75 TCGA-IG-A3YB-01 X 152228013 152228013 C T PNMA3 3'UTR 0.77 TCGA-IG-A3YB-01 X 155255244 155255248 GGGAC AT WASH6P RNA 0.20 TCGA-IG-A3YB-01 X 53970565 53970565 A C PHF8 Splice_Site p.X919_splice 0.68 TCGA-IG-A3YC-01 10 23292215 23292215 C T ARMC3 Missense_Mutation p.R535W 0.25 deleterious(0) possibly_damaging(0.841) TCGA-IG-A3YC-01 10 48370969 48370969 A G ZNF488 Missense_Mutation p.K146R 0.50 deleterious(0.02) benign(0.007) TCGA-IG-A3YC-01 11 123480536 123480536 A T GRAMD1B Missense_Mutation p.N421I 0.21 tolerated(0.07) benign(0.032) TCGA-IG-A3YC-01 11 124121122 124121122 A G OR8G1 Missense_Mutation p.R234G 0.07 deleterious_low_confidence(0) probably_damaging(0.945) TCGA-IG-A3YC-01 11 124135103 124135105 CTC - OR8G5 In_Frame_Del p.S128del 0.15 TCGA-IG-A3YC-01 11 550123 550123 C A LRRC56 Missense_Mutation p.L159M 0.14 deleterious(0) probably_damaging(0.999) TCGA-IG-A3YC-01 11 66616073 66616073 A T PC 3'UTR 0.14 TCGA-IG-A3YC-01 12 105562252 105562252 A G KIAA1033 3'UTR 0.36 TCGA-IG-A3YC-01 12 109702980 109702980 G C ACACB Missense_Mutation p.E2336D 0.32 deleterious(0.01) possibly_damaging(0.908) TCGA-IG-A3YC-01 12 112241777 112241778 TG - ALDH2 Splice_Site p.X507_splice 0.18 TCGA-IG-A3YC-01 12 23999004 23999004 G A SOX5 Missense_Mutation p.P132S 0.22 deleterious(0) probably_damaging(0.998) TCGA-IG-A3YC-01 12 53848620 53848620 C A PCBP2 Silent p.V12V 0.11 TCGA-IG-A3YC-01 12 7842645 7842645 G A GDF3 Silent p.S308S 0.17 TCGA-IG-A3YC-01 13 102379101 102379101 G C FGF14 Missense_Mutation p.I161M 0.31 tolerated(0.09) possibly_damaging(0.452) TCGA-IG-A3YC-01 14 31774121 31774121 G C RP11-596D21.1 3'Flank 0.33 TCGA-IG-A3YC-01 14 67799567 67799567 C T MPP5 Missense_Mutation p.T641M 0.15 tolerated(0.54) probably_damaging(0.939) TCGA-IG-A3YC-01 14 80329492 80329492 C T NRXN3 3'Flank 0.47 TCGA-IG-A3YC-01 15 33066543 33066543 G A FMN1 Missense_Mutation p.R1187C 0.27 deleterious(0.01) benign(0.349) TCGA-IG-A3YC-01 15 72040919 72040919 G - THSD4 Frame_Shift_Del p.E801Sfs*22 0.15 TCGA-IG-A3YC-01 15 72190310 72190310 T C MYO9A Missense_Mutation p.M1512V 0.06 deleterious_low_confidence(0) benign(0.129) TCGA-IG-A3YC-01 16 836115 836115 G A RPUSD1 Silent p.P258P 0.27 TCGA-IG-A3YC-01 17 17718043 17718043 T A SREBF1 Missense_Mutation p.K904M 0.18 deleterious(0) probably_damaging(0.996) TCGA-IG-A3YC-01 17 37842243 37842243 C T PGAP3 Missense_Mutation p.E71K 0.12 tolerated(0.12) benign(0.035) TCGA-IG-A3YC-01 17 39324398 39324398 G A KRTAP4-3 Silent p.V9V 0.14 TCGA-IG-A3YC-01 17 57697397 57697397 C T CLTC 5'UTR 0.26 TCGA-IG-A3YC-01 17 7578493 7578493 C T TP53 Nonsense_Mutation p.W146* 0.43 TCGA-IG-A3YC-01 17 7919550 7919550 C A GUCY2D Missense_Mutation p.L1056I 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-IG-A3YC-01 18 24495846 24495846 C G CHST9 3'UTR 0.23 TCGA-IG-A3YC-01 18 29210978 29210978 G T B4GALT6 Nonsense_Mutation p.Y240* 0.26 TCGA-IG-A3YC-01 19 10083616 10083616 C T COL5A3 Silent p.E1251E 0.24 TCGA-IG-A3YC-01 19 35524873 35524873 C T SCN1B Silent p.S226S 0.38 TCGA-IG-A3YC-01 19 40319120 40319120 G A DYRK1B Silent p.G208G 0.11 TCGA-IG-A3YC-01 19 49113245 49113245 G A FAM83E Missense_Mutation p.R216C 0.25 deleterious(0) probably_damaging(0.996) TCGA-IG-A3YC-01 19 52550148 52550148 C T ZNF432 5'UTR 0.21 TCGA-IG-A3YC-01 19 58232292 58232292 G T ZNF671 Missense_Mutation p.Q388K 0.16 tolerated(0.35) benign(0.358) TCGA-IG-A3YC-01 1 111957574 111957574 C A OVGP1 Missense_Mutation p.V517L 0.14 tolerated_low_confidence(0.14) benign(0.072) TCGA-IG-A3YC-01 1 150238905 150238905 G A APH1A Intron 0.10 TCGA-IG-A3YC-01 1 162492706 162492706 G C UHMK1 3'UTR 0.12 TCGA-IG-A3YC-01 1 16342202 16342202 G A HSPB7 Missense_Mutation p.P129L 0.16 deleterious(0) probably_damaging(1) TCGA-IG-A3YC-01 1 165620279 165620279 A T MGST3 Missense_Mutation p.E49V 0.15 deleterious(0) benign(0.209) TCGA-IG-A3YC-01 1 196758866 196758866 G C CFHR3 Intron 0.32 TCGA-IG-A3YC-01 1 214171007 214171007 C T PROX1 Missense_Mutation p.R377C 0.21 tolerated(0.08) possibly_damaging(0.761) TCGA-IG-A3YC-01 1 240072404 240072404 C T CHRM3 Silent p.F551F 0.25 TCGA-IG-A3YC-01 1 243363956 243363956 C T CEP170 Silent p.Q120Q 0.29 TCGA-IG-A3YC-01 1 245025801 245025803 TCT - HNRNPU In_Frame_Del p.E279del 0.22 TCGA-IG-A3YC-01 1 248344165 248344165 G A OR2M2 Missense_Mutation p.R293H 0.10 deleterious(0.03) benign(0.009) TCGA-IG-A3YC-01 1 6610498 6610498 T C NOL9 Missense_Mutation p.K192E 0.15 deleterious(0) benign(0.242) TCGA-IG-A3YC-01 20 13850839 13850840 - T SEL1L2 Frame_Shift_Ins p.I372Nfs*25 0.19 TCGA-IG-A3YC-01 20 39831306 39831306 G T ZHX3 Missense_Mutation p.P751T 0.20 tolerated(0.08) benign(0.002) TCGA-IG-A3YC-01 22 33255426 33255426 C G TIMP3 3'UTR 0.23 TCGA-IG-A3YC-01 2 179247154 179247154 A T OSBPL6 Missense_Mutation p.D539V 0.19 deleterious(0) probably_damaging(0.984) TCGA-IG-A3YC-01 2 207516442 207516442 T C DYTN 3'UTR 0.19 TCGA-IG-A3YC-01 2 48010277 48010277 T A MSH6 5'UTR 0.25 TCGA-IG-A3YC-01 3 150883635 150883635 G C MED12L Missense_Mutation p.V454L 0.15 tolerated(0.58) benign(0.168) TCGA-IG-A3YC-01 3 169889088 169889088 T C PHC3 Intron 0.12 TCGA-IG-A3YC-01 5 1034951 1034951 C T NKD2 Silent p.L169L 0.21 TCGA-IG-A3YC-01 5 133915605 133915605 G A JADE2 3'UTR 0.20 TCGA-IG-A3YC-01 5 140537168 140537168 G A PCDHB17 Missense_Mutation p.R531H 0.07 tolerated_low_confidence(0.2) benign(0.067) TCGA-IG-A3YC-01 5 1443252 1443252 G A SLC6A3 Missense_Mutation p.P21S 0.15 tolerated(0.59) benign(0.002) TCGA-IG-A3YC-01 5 35876573 35876573 C G IL7R Missense_Mutation p.F455L 0.10 deleterious(0) probably_damaging(0.999) TCGA-IG-A3YC-01 5 40681944 40681944 C G PTGER4 Missense_Mutation p.I283M 0.35 deleterious(0) probably_damaging(0.948) TCGA-IG-A3YC-01 5 77511947 77511947 C G AP3B1 Missense_Mutation p.G240R 0.24 deleterious(0) probably_damaging(0.998) TCGA-IG-A3YC-01 5 7827274 7827274 C A ADCY2 3'UTR 0.20 TCGA-IG-A3YC-01 6 165715349 165715349 C G C6orf118 Missense_Mutation p.E154D 0.19 tolerated(0.23) benign(0.055) TCGA-IG-A3YC-01 6 28875015 28875015 G A TRIM27 Missense_Mutation p.S315L 0.17 tolerated(0.36) benign(0.011) TCGA-IG-A3YC-01 6 29974769 29974769 T A ZNRD1-AS1 Intron 0.37 TCGA-IG-A3YC-01 6 65146103 65146103 C T EYS Missense_Mutation p.R1964K 0.17 tolerated(0.98) benign(0.001) TCGA-IG-A3YC-01 6 66200582 66200582 A T EYS Missense_Mutation p.I256K 0.17 tolerated(0.73) probably_damaging(0.965) TCGA-IG-A3YC-01 7 100609893 100609893 A G MUC3A Missense_Mutation p.T845A 0.06 tolerated(0.58) benign(0.034) TCGA-IG-A3YC-01 7 107872803 107872803 C A NRCAM Missense_Mutation p.A132S 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-IG-A3YC-01 7 38725145 38725145 G A FAM183B 3'UTR 0.19 TCGA-IG-A3YC-01 7 64452476 64452476 T A ERV3-1 Missense_Mutation p.E310V 0.14 deleterious(0.01) possibly_damaging(0.891) TCGA-IG-A3YC-01 7 80432008 80432008 C T SEMA3C Missense_Mutation p.G297S 0.10 deleterious(0) probably_damaging(1) TCGA-IG-A3YC-01 7 81964469 81964469 G A CACNA2D1 Silent p.N92N 0.17 TCGA-IG-A3YC-01 7 92765282 92765282 C G SAMD9L Translation_Start_Site p.M1? 0.35 deleterious(0) probably_damaging(0.999) TCGA-IG-A3YC-01 7 93519957 93519957 G T TFPI2 Missense_Mutation p.L12M 0.42 deleterious(0.02) possibly_damaging(0.86) TCGA-IG-A3YC-01 8 106431482 106431482 G C ZFPM2 Missense_Mutation p.G51R 0.09 tolerated(0.24) benign(0.145) TCGA-IG-A3YC-01 X 92927199 92927199 T G NAP1L3 Silent p.R369R 0.27 TCGA-IG-A4P3-01 10 101967073 101967073 T C CHUK Missense_Mutation p.Y382C 0.30 tolerated(0.18) benign(0.081) TCGA-IG-A4P3-01 10 114190319 114190319 G A ZDHHC6 3'UTR 0.20 TCGA-IG-A4P3-01 10 127693454 127693454 C G FANK1 Missense_Mutation p.L181V 0.25 deleterious(0.01) possibly_damaging(0.578) TCGA-IG-A4P3-01 10 128935704 128935704 C G FAM196A 3'UTR 0.28 TCGA-IG-A4P3-01 10 129913420 129913420 G C MKI67 Missense_Mutation p.L418V 0.37 tolerated(0.11) possibly_damaging(0.681) TCGA-IG-A4P3-01 10 13699399 13699399 G C FRMD4A Missense_Mutation p.F730L 0.29 tolerated(0.12) benign(0.005) TCGA-IG-A4P3-01 10 29821901 29821901 C G SVIL Silent p.V465V 0.23 TCGA-IG-A4P3-01 10 33140807 33140807 G C C10ORF68 Missense_Mutation p.G566A 0.26 tolerated(0.07) benign(0.013) TCGA-IG-A4P3-01 10 43977046 43977046 C T ZNF487 Silent p.G101G 0.19 TCGA-IG-A4P3-01 10 53667299 53667299 T C PRKG1 Missense_Mutation p.I244T 0.40 tolerated(0.64) benign(0.006) TCGA-IG-A4P3-01 11 102822858 102822858 A G MMP13 Silent p.L228L 0.41 TCGA-IG-A4P3-01 11 105009559 105009559 G A CARD18 Missense_Mutation p.S85L 0.10 tolerated(0.13) benign(0.007) TCGA-IG-A4P3-01 11 118890872 118890872 C G TRAPPC4 Missense_Mutation p.I121M 0.10 tolerated(0.16) probably_damaging(0.97) TCGA-IG-A4P3-01 11 132286874 132286874 A T OPCML 3'UTR 0.19 TCGA-IG-A4P3-01 11 26713971 26713971 G A SLC5A12 Intron 0.22 TCGA-IG-A4P3-01 11 31447855 31447855 G T DNAJC24 Missense_Mutation p.G91V 0.38 tolerated(0.16) possibly_damaging(0.53) TCGA-IG-A4P3-01 11 40137250 40137250 T A LRRC4C Missense_Mutation p.N198I 0.17 deleterious(0) probably_damaging(0.994) TCGA-IG-A4P3-01 11 50003299 50003299 A C OR4C12 Missense_Mutation p.L247V 0.12 deleterious_low_confidence(0) possibly_damaging(0.447) TCGA-IG-A4P3-01 11 55563633 55563633 T G OR5D14 Missense_Mutation p.L201R 0.28 deleterious(0.02) possibly_damaging(0.653) TCGA-IG-A4P3-01 11 59568757 59568757 G A STX3 3'UTR 0.23 TCGA-IG-A4P3-01 11 7112042 7112042 C A RBMXL2 3'UTR 0.21 TCGA-IG-A4P3-01 11 72297162 72297162 G - PDE2A Frame_Shift_Del p.S379Afs*98 0.08 TCGA-IG-A4P3-01 11 72297198 72297198 G A PDE2A Silent p.I366I 0.13 TCGA-IG-A4P3-01 12 109673410 109673410 G A ACACB Splice_Site p.X1469_splice 0.10 TCGA-IG-A4P3-01 12 121138090 121138090 C T MLEC 3'UTR 0.33 TCGA-IG-A4P3-01 12 121878953 121878953 C T KDM2B Missense_Mutation p.R1123Q 0.25 deleterious(0.02) probably_damaging(0.996) TCGA-IG-A4P3-01 12 132625429 132625429 C T DDX51 Missense_Mutation p.D463N 0.32 tolerated(0.26) benign(0.004) TCGA-IG-A4P3-01 12 21028192 21028192 G C SLCO1B3 Missense_Mutation p.D251H 0.31 deleterious(0) probably_damaging(0.999) TCGA-IG-A4P3-01 12 4714126 4714126 C G DYRK4 Missense_Mutation p.I276M 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-IG-A4P3-01 12 51135289 51135289 C T DIP2B Missense_Mutation p.S1482L 0.16 deleterious(0) probably_damaging(0.994) TCGA-IG-A4P3-01 12 56347519 56347520 CC T DGKA Frame_Shift_Del p.R726Afs*9 0.29 TCGA-IG-A4P3-01 12 66742575 66742575 G T GRIP1 3'UTR 0.38 TCGA-IG-A4P3-01 12 70048704 70048704 C G BEST3 Missense_Mutation p.E664Q 0.10 tolerated_low_confidence(0.17) possibly_damaging(0.556) TCGA-IG-A4P3-01 12 78582430 78582430 G A NAV3 Silent p.L1954L 0.18 TCGA-IG-A4P3-01 12 88524980 88524980 C T CEP290 Missense_Mutation p.E153K 0.25 probably_damaging(0.999) TCGA-IG-A4P3-01 12 9728249 9728249 C G RP11-726G1.1 RNA 0.28 TCGA-IG-A4P3-01 13 114622591 114622591 C T LINC00452 RNA 0.06 TCGA-IG-A4P3-01 13 21975811 21975811 T C ZDHHC20 Missense_Mutation p.M152V 0.19 deleterious(0) benign(0.236) TCGA-IG-A4P3-01 13 28122482 28122482 C T LNX2 Missense_Mutation p.S688N 0.33 deleterious(0) probably_damaging(0.998) TCGA-IG-A4P3-01 13 33692207 33692207 T C STARD13 Missense_Mutation p.Y759C 0.20 deleterious(0) probably_damaging(0.992) TCGA-IG-A4P3-01 13 36245305 36245305 G A NBEA 3'UTR 0.17 TCGA-IG-A4P3-01 14 106967495 106967495 T G IGHV1-46 5'UTR 0.21 TCGA-IG-A4P3-01 14 22631624 22631624 C G TRAV29DV5 Missense_Mutation p.F72L 0.20 tolerated(1) benign(0.014) TCGA-IG-A4P3-01 14 24584027 24584027 C T DCAF11 5'UTR 0.27 TCGA-IG-A4P3-01 14 58920065 58920065 C G KIAA0586 Intron 0.23 TCGA-IG-A4P3-01 14 67878826 67878826 C G PLEK2 5'UTR 0.38 TCGA-IG-A4P3-01 14 70925471 70925471 C G ADAM21 Missense_Mutation p.Q419E 0.13 tolerated(1) benign(0.014) TCGA-IG-A4P3-01 14 94847363 94847363 C G SERPINA1 Missense_Mutation p.Q254H 0.11 tolerated(1) benign(0.001) TCGA-IG-A4P3-01 14 95918609 95918609 T A SYNE3 Missense_Mutation p.I417F 0.39 deleterious(0) benign(0.128) TCGA-IG-A4P3-01 15 23811569 23811569 G A MKRN3 Missense_Mutation p.G214S 0.42 deleterious(0.03) probably_damaging(0.963) TCGA-IG-A4P3-01 15 23890265 23890265 G C MAGEL2 Silent p.S272S 0.23 TCGA-IG-A4P3-01 15 28437270 28437270 G A HERC2 Missense_Mutation p.S2763F 0.18 possibly_damaging(0.495) TCGA-IG-A4P3-01 15 35274883 35274883 C A ZNF770 Missense_Mutation p.K251N 0.63 tolerated(0.5) benign(0.07) TCGA-IG-A4P3-01 15 35274940 35274940 C T ZNF770 Silent p.L232L 0.47 TCGA-IG-A4P3-01 15 35274965 35274965 C G ZNF770 Missense_Mutation p.G224A 0.47 deleterious(0.01) probably_damaging(1) TCGA-IG-A4P3-01 15 35275079 35275079 C A ZNF770 Missense_Mutation p.R186M 0.43 deleterious(0) probably_damaging(0.963) TCGA-IG-A4P3-01 15 35275110 35275110 C G ZNF770 Missense_Mutation p.D176H 0.36 deleterious(0.01) probably_damaging(0.984) TCGA-IG-A4P3-01 15 35275194 35275194 C G ZNF770 Missense_Mutation p.D148H 0.31 deleterious(0.03) possibly_damaging(0.885) TCGA-IG-A4P3-01 15 35275227 35275227 C A ZNF770 Nonsense_Mutation p.E137* 0.31 TCGA-IG-A4P3-01 15 35275230 35275230 C A ZNF770 Nonsense_Mutation p.E136* 0.40 TCGA-IG-A4P3-01 15 35275289 35275289 C G ZNF770 Missense_Mutation p.R116T 0.39 tolerated(0.12) possibly_damaging(0.632) TCGA-IG-A4P3-01 15 35275292 35275292 C T ZNF770 Missense_Mutation p.R115K 0.38 tolerated(0.37) benign(0.015) TCGA-IG-A4P3-01 15 35275345 35275345 C A ZNF770 Silent p.V97V 0.34 TCGA-IG-A4P3-01 15 35275357 35275357 C T ZNF770 Silent p.L93L 0.30 TCGA-IG-A4P3-01 15 35275442 35275442 C G ZNF770 Missense_Mutation p.R65T 0.30 deleterious(0) probably_damaging(0.999) TCGA-IG-A4P3-01 15 35275464 35275464 C T ZNF770 Missense_Mutation p.D58N 0.28 tolerated(0.48) possibly_damaging(0.805) TCGA-IG-A4P3-01 15 42749300 42749300 T C ZNF106 Missense_Mutation p.Y35C 0.42 deleterious(0) probably_damaging(0.999) TCGA-IG-A4P3-01 15 99768848 99768848 G C TTC23 Missense_Mutation p.H24D 0.14 deleterious_low_confidence(0.03) benign(0.005) TCGA-IG-A4P3-01 15 99816796 99816796 C G LRRC28 Missense_Mutation p.Q62E 0.09 tolerated(0.15) possibly_damaging(0.487) TCGA-IG-A4P3-01 16 1393012 1393012 C G BAIAP3 Silent p.A455A 0.27 TCGA-IG-A4P3-01 16 20966359 20966359 G A DNAH3 Missense_Mutation p.P3616L 0.29 deleterious(0) probably_damaging(0.996) TCGA-IG-A4P3-01 16 2139786 2139786 G C PKD1 Missense_Mutation p.T4285S 0.24 benign(0.001) TCGA-IG-A4P3-01 16 22558146 22558146 C G RP11-368J21.3 RNA 0.10 TCGA-IG-A4P3-01 16 48117642 48117642 G T ABCC12 Missense_Mutation p.A1355E 0.25 deleterious(0) possibly_damaging(0.764) TCGA-IG-A4P3-01 16 51170299 51170299 A - SALL1 3'UTR 0.19 TCGA-IG-A4P3-01 16 56396627 56396627 G C AMFR 3'UTR 0.28 TCGA-IG-A4P3-01 16 66997813 66997813 C T CES3 Missense_Mutation p.R179C 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-IG-A4P3-01 16 87921625 87921625 C G CA5A 3'UTR 0.18 TCGA-IG-A4P3-01 17 10429074 10429074 A G MYH2 Missense_Mutation p.L1436P 0.06 deleterious(0.01) benign(0.278) TCGA-IG-A4P3-01 17 25877646 25877646 C T KSR1 5'UTR 0.18 TCGA-IG-A4P3-01 17 27037996 27037996 T C PROCA1 Intron 0.27 TCGA-IG-A4P3-01 17 33318055 33318055 G C LIG3 Missense_Mutation p.L321F 0.27 deleterious(0) probably_damaging(0.988) TCGA-IG-A4P3-01 17 33953659 33953659 C A AP2B1 Missense_Mutation p.P246T 0.03 deleterious(0) probably_damaging(0.944) TCGA-IG-A4P3-01 17 35902238 35902238 G C SYNRG Missense_Mutation p.S1013C 0.31 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-IG-A4P3-01 17 36909465 36909465 C T PSMB3 Silent p.I22I 0.15 TCGA-IG-A4P3-01 17 49710983 49710983 T G CA10 Missense_Mutation p.N273T 0.27 deleterious(0.02) benign(0.249) TCGA-IG-A4P3-01 17 55193552 55193552 G A AKAP1 Missense_Mutation p.E788K 0.20 deleterious(0) probably_damaging(0.911) TCGA-IG-A4P3-01 17 71197644 71197644 T C COG1 Missense_Mutation p.Y560H 0.46 deleterious(0) benign(0.019) TCGA-IG-A4P3-01 17 72781707 72781707 C T TMEM104 Silent p.V44V 0.44 TCGA-IG-A4P3-01 17 73096682 73096682 C T SLC16A5 Silent p.F308F 0.13 TCGA-IG-A4P3-01 17 73102226 73102226 A C SLC16A5 3'UTR 0.20 TCGA-IG-A4P3-01 17 73643892 73643892 G C SMIM6 3'UTR 0.18 TCGA-IG-A4P3-01 17 7577106 7577106 G A TP53 Missense_Mutation p.P278S 0.27 deleterious(0.03) probably_damaging(1) TCGA-IG-A4P3-01 18 29709260 29709260 C G RNF138 3'UTR 0.19 TCGA-IG-A4P3-01 18 31432285 31432285 G A NOL4 3'UTR 0.14 TCGA-IG-A4P3-01 18 31432316 31432316 A G NOL4 3'UTR 0.21 TCGA-IG-A4P3-01 18 33689687 33689687 C A SLC39A6 Missense_Mutation p.D713Y 0.15 deleterious(0) probably_damaging(1) TCGA-IG-A4P3-01 18 42532361 42532361 G A SETBP1 Missense_Mutation p.R1019H 0.24 deleterious(0.01) probably_damaging(0.997) TCGA-IG-A4P3-01 18 43675034 43675034 G T ATP5A1 Missense_Mutation p.H42N 0.19 tolerated_low_confidence(0.32) benign(0) TCGA-IG-A4P3-01 19 11835025 11835025 C G ZNF823 Missense_Mutation p.A59P 0.25 tolerated(0.55) benign(0.001) TCGA-IG-A4P3-01 19 13054423 13054423 G A CALR Missense_Mutation p.E345K 0.24 tolerated(0.2) benign(0.07) TCGA-IG-A4P3-01 19 13862599 13862599 G C CCDC130 5'UTR 0.12 TCGA-IG-A4P3-01 19 13919937 13919937 C G ZSWIM4 Silent p.L305L 0.32 TCGA-IG-A4P3-01 19 14522366 14522366 C G DDX39A Missense_Mutation p.Q127H 0.20 deleterious(0) possibly_damaging(0.774) TCGA-IG-A4P3-01 19 18543996 18543996 G C SSBP4 Missense_Mutation p.E322Q 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-IG-A4P3-01 19 19779734 19779734 C T ZNF101 5'UTR 0.19 TCGA-IG-A4P3-01 19 23414089 23414089 C T ZNF724P Missense_Mutation p.E69K 0.07 tolerated(0.12) possibly_damaging(0.636) TCGA-IG-A4P3-01 19 3005824 3005824 G - TLE2 Frame_Shift_Del p.P548Qfs*130 0.22 TCGA-IG-A4P3-01 19 43348520 43348520 C T PSG10P RNA 0.28 TCGA-IG-A4P3-01 19 51226822 51226822 C A CLEC11A Missense_Mutation p.Q14K 0.29 deleterious_low_confidence(0.01) benign(0.156) TCGA-IG-A4P3-01 19 53884541 53884541 C T ZNF525 Missense_Mutation p.H237Y 0.17 deleterious(0.02) benign(0.001) TCGA-IG-A4P3-01 19 55859477 55859477 G C SUV420H2 3'UTR 0.23 TCGA-IG-A4P3-01 19 58472903 58472903 C G C19orf18 Missense_Mutation p.E130Q 0.14 deleterious(0) possibly_damaging(0.859) TCGA-IG-A4P3-01 19 9075971 9075971 T A MUC16 Silent p.P3825P 0.30 TCGA-IG-A4P3-01 1 104113141 104113141 A G AMY2B Intron 0.06 TCGA-IG-A4P3-01 1 115259567 115259567 C T CSDE1 3'UTR 0.27 TCGA-IG-A4P3-01 1 144013980 144013980 C G SRGAP2B RNA 0.13 TCGA-IG-A4P3-01 1 147086253 147086253 C T BCL9 Missense_Mutation p.S133F 0.13 tolerated(0.09) benign(0.002) TCGA-IG-A4P3-01 1 147096909 147096909 G C BCL9 3'UTR 0.18 TCGA-IG-A4P3-01 1 158549211 158549211 A T OR10X1 Missense_Mutation p.L160H 0.12 deleterious(0.01) benign(0.182) TCGA-IG-A4P3-01 1 161561031 161561031 C T FCGR2C 5'Flank 0.18 TCGA-IG-A4P3-01 1 171303853 171303853 C G FMO4 Missense_Mutation p.I377M 0.39 tolerated(0.09) probably_damaging(0.984) TCGA-IG-A4P3-01 1 178062346 178062346 G A RASAL2 5'Flank 0.16 TCGA-IG-A4P3-01 1 179659934 179659934 G A TDRD5 Silent p.L988L 0.19 TCGA-IG-A4P3-01 1 19559457 19559457 C G EMC1 Missense_Mutation p.M535I 0.18 deleterious(0.01) benign(0.059) TCGA-IG-A4P3-01 1 197071323 197071323 C T ASPM Missense_Mutation p.R2353K 0.34 tolerated(0.22) benign(0.042) TCGA-IG-A4P3-01 1 207967081 207967081 G C CD46 3'UTR 0.26 TCGA-IG-A4P3-01 1 216144008 216144008 C T USH2A Missense_Mutation p.V2306I 0.45 benign(0.244) TCGA-IG-A4P3-01 1 217856693 217856693 G A SPATA17 Missense_Mutation p.D129N 0.10 deleterious(0.05) benign(0.009) TCGA-IG-A4P3-01 1 232607242 232607242 G A SIPA1L2 Silent p.I706I 0.59 TCGA-IG-A4P3-01 1 24019156 24019156 C G RPL11 Missense_Mutation p.L22V 0.19 tolerated(0.3) benign(0.37) TCGA-IG-A4P3-01 1 242271125 242271125 A G PLD5 Silent p.L363L 0.07 TCGA-IG-A4P3-01 1 247902091 247902091 T A OR14K1 Missense_Mutation p.F59I 0.06 deleterious(0.01) probably_damaging(0.965) TCGA-IG-A4P3-01 1 43916150 43916150 G A SZT2 Silent p.%3D 0.12 TCGA-IG-A4P3-01 1 45963037 45963037 G T CCDC163P Missense_Mutation p.P66T 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-IG-A4P3-01 1 49193621 49193621 G C BEND5 Missense_Mutation p.I401M 0.15 deleterious(0) probably_damaging(0.999) TCGA-IG-A4P3-01 1 62907260 62907260 A G USP1 Missense_Mutation p.Y91C 0.28 deleterious(0) probably_damaging(1) TCGA-IG-A4P3-01 1 64014721 64014721 C T DLEU2L 5'UTR 0.15 TCGA-IG-A4P3-01 1 6704700 6704700 C A DNAJC11 Missense_Mutation p.A339S 0.26 deleterious(0.03) benign(0.04) TCGA-IG-A4P3-01 1 84701429 84701429 C G PRKACB 3'UTR 0.32 TCGA-IG-A4P3-01 1 92193264 92193264 G C TGFBR3 Silent p.V279V 0.16 TCGA-IG-A4P3-01 1 92224237 92224237 G A TGFBR3 Missense_Mutation p.S106F 0.12 deleterious(0) probably_damaging(1) TCGA-IG-A4P3-01 20 25053267 25053267 A G VSX1 3'Flank 0.26 TCGA-IG-A4P3-01 20 30380547 30380547 G C TPX2 Missense_Mutation p.E475Q 0.34 tolerated(0.06) possibly_damaging(0.517) TCGA-IG-A4P3-01 20 30671780 30671780 G A HCK Missense_Mutation p.G206R 0.12 deleterious(0) probably_damaging(0.987) TCGA-IG-A4P3-01 20 40045236 40045236 T C CHD6 Missense_Mutation p.I2160V 0.17 tolerated(1) benign(0.001) TCGA-IG-A4P3-01 20 62223484 62223484 G C GMEB2 Silent p.L281L 0.42 TCGA-IG-A4P3-01 21 38462544 38462544 C A TTC3 Missense_Mutation p.F146L 0.14 tolerated(0.29) benign(0.004) TCGA-IG-A4P3-01 21 46716123 46716123 C G LINC00205 RNA 0.26 TCGA-IG-A4P3-01 22 17072414 17072414 T A CCT8L2 Missense_Mutation p.R343W 0.21 deleterious(0) possibly_damaging(0.61) TCGA-IG-A4P3-01 22 19028769 19028769 C G DGCR2 Missense_Mutation p.D400H 0.21 deleterious(0) probably_damaging(0.998) TCGA-IG-A4P3-01 22 19263189 19263189 C G CLTCL1 Missense_Mutation p.E69D 0.07 tolerated(1) benign(0.006) TCGA-IG-A4P3-01 22 38343465 38343465 C G C22orf23 Missense_Mutation p.D58H 0.11 deleterious(0.04) possibly_damaging(0.863) TCGA-IG-A4P3-01 22 41832168 41832168 C T TOB2 3'UTR 0.36 TCGA-IG-A4P3-01 22 42557353 42557353 C A TCF20 3'UTR 0.14 TCGA-IG-A4P3-01 22 46752874 46752874 G T TRMU Missense_Mutation p.D413Y 0.29 deleterious_low_confidence(0.03) benign(0.079) TCGA-IG-A4P3-01 2 101093850 101093850 G C NMS Missense_Mutation p.E79Q 0.12 deleterious(0.02) benign(0.255) TCGA-IG-A4P3-01 2 128183756 128183756 C T PROC Missense_Mutation p.R211W 0.23 tolerated(0.18) benign(0.302) TCGA-IG-A4P3-01 2 131128322 131128322 G A PTPN18 Missense_Mutation p.M267I 0.18 tolerated(0.3) benign(0.063) TCGA-IG-A4P3-01 2 149226195 149226195 G C MBD5 Missense_Mutation p.G228A 0.29 deleterious(0.01) possibly_damaging(0.899) TCGA-IG-A4P3-01 2 153575184 153575184 G A ARL6IP6 Missense_Mutation p.G16S 0.17 tolerated_low_confidence(0.08) benign(0.024) TCGA-IG-A4P3-01 2 157426011 157426011 C G GPD2 Silent p.L479L 0.29 TCGA-IG-A4P3-01 2 162751319 162751319 A C SLC4A10 Missense_Mutation p.K442T 0.14 deleterious(0.02) probably_damaging(0.996) TCGA-IG-A4P3-01 2 165996004 165996004 G A SCN3A Silent p.L712L 0.27 TCGA-IG-A4P3-01 2 166900304 166900304 T G SCN1A Missense_Mutation p.K640Q 0.21 deleterious(0.03) probably_damaging(0.986) TCGA-IG-A4P3-01 2 179658217 179658217 C T TTN Missense_Mutation p.D484N 0.12 TCGA-IG-A4P3-01 2 179730512 179730512 C G CCDC141 Missense_Mutation p.M902I 0.18 tolerated(0.14) benign(0.002) TCGA-IG-A4P3-01 2 201682946 201682946 G C BZW1 Missense_Mutation p.E249Q 0.28 deleterious(0.02) possibly_damaging(0.623) TCGA-IG-A4P3-01 2 204303018 204303018 C G RAPH1 3'UTR 0.19 TCGA-IG-A4P3-01 2 210597411 210597411 T G MAP2 3'UTR 0.15 TCGA-IG-A4P3-01 2 21238336 21238336 G A APOB Silent p.L1138L 0.18 TCGA-IG-A4P3-01 2 232327928 232327928 C T NCL Missense_Mutation p.D40N 0.12 unknown(0) TCGA-IG-A4P3-01 2 27276293 27276293 G A AGBL5 Missense_Mutation p.R80Q 0.28 tolerated(0.11) benign(0.056) TCGA-IG-A4P3-01 2 44586763 44586763 T C PREPL Missense_Mutation p.Y31C 0.32 tolerated_low_confidence(0.21) benign(0) TCGA-IG-A4P3-01 2 55122100 55122100 A G EML6 Missense_Mutation p.M931V 0.46 tolerated(0.3) benign(0.017) TCGA-IG-A4P3-01 2 5835839 5835839 G A SOX11 3'UTR 0.23 TCGA-IG-A4P3-01 2 66665074 66665074 G A MEIS1 Missense_Mutation p.R73K 0.36 tolerated(0.07) benign(0.354) TCGA-IG-A4P3-01 2 73899496 73899496 G C ALMS1P RNA 0.12 TCGA-IG-A4P3-01 2 74902360 74902360 C G SEMA4F Missense_Mutation p.F407L 0.40 deleterious(0) probably_damaging(0.999) TCGA-IG-A4P3-01 2 84864352 84864352 G C DNAH6 Missense_Mutation p.E1558Q 0.35 deleterious(0.01) benign(0.261) TCGA-IG-A4P3-01 2 88405881 88405881 A C SMYD1 Missense_Mutation p.E340A 0.10 tolerated(0.09) benign(0.035) TCGA-IG-A4P3-01 3 108129652 108129652 C T MYH15 Missense_Mutation p.G1445R 0.18 deleterious(0.02) benign(0.111) TCGA-IG-A4P3-01 3 111694519 111694519 G C PHLDB2 3'UTR 0.09 TCGA-IG-A4P3-01 3 113619947 113619947 G C GRAMD1C Missense_Mutation p.E204Q 0.15 deleterious(0.01) possibly_damaging(0.548) TCGA-IG-A4P3-01 3 118948751 118948751 C T B4GALT4 Missense_Mutation p.E66K 0.11 tolerated(0.44) benign(0.004) TCGA-IG-A4P3-01 3 120122126 120122126 G C FSTL1 Silent p.L219L 0.17 TCGA-IG-A4P3-01 3 12776026 12776026 T A TMEM40 3'UTR 0.14 TCGA-IG-A4P3-01 3 134880869 134880869 G C EPHB1 Missense_Mutation p.E478Q 0.13 tolerated(0.16) benign(0.099) TCGA-IG-A4P3-01 3 136664643 136664643 A C NCK1 Missense_Mutation p.N149H 0.14 tolerated(0.08) possibly_damaging(0.811) TCGA-IG-A4P3-01 3 140401907 140401907 C G TRIM42 Missense_Mutation p.F315L 0.18 tolerated(0.3) benign(0) TCGA-IG-A4P3-01 3 140675495 140675495 C G SLC25A36 Silent p.V56V 0.12 TCGA-IG-A4P3-01 3 142557648 142557648 C T PCOLCE2 Missense_Mutation p.R225K 0.09 tolerated(1) benign(0.006) TCGA-IG-A4P3-01 3 147124224 147124224 C T ZIC4 5'Flank 0.18 TCGA-IG-A4P3-01 3 150176665 150176665 G A TSC22D2 3'UTR 0.14 TCGA-IG-A4P3-01 3 159557928 159557928 C T SCHIP1 5'UTR 0.18 TCGA-IG-A4P3-01 3 160135727 160135727 G C SMC4 Missense_Mutation p.E552Q 0.12 tolerated(0.09) benign(0.052) TCGA-IG-A4P3-01 3 170198910 170198910 G A SLC7A14 Silent p.A387A 0.27 TCGA-IG-A4P3-01 3 170607019 170607019 C G EIF5A2 3'UTR 0.16 TCGA-IG-A4P3-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.18 deleterious(0.02) probably_damaging(0.959) TCGA-IG-A4P3-01 3 189838136 189838136 C A LEPREL1 Missense_Mutation p.G129W 0.35 deleterious(0) probably_damaging(0.998) TCGA-IG-A4P3-01 3 193335055 193335055 G A OPA1 Silent p.L179L 0.08 TCGA-IG-A4P3-01 3 32031299 32031299 C G ZNF860 Nonsense_Mutation p.S243* 0.46 TCGA-IG-A4P3-01 3 33592770 33592770 C G CLASP2 Missense_Mutation p.E1051Q 0.14 deleterious(0.01) benign(0.057) TCGA-IG-A4P3-01 3 33870405 33870405 C T PDCD6IP Nonsense_Mutation p.Q265* 0.24 TCGA-IG-A4P3-01 3 44777740 44777740 G C ZNF501 3'UTR 0.33 TCGA-IG-A4P3-01 3 78689030 78689030 G T ROBO1 Silent p.I967I 0.18 TCGA-IG-A4P3-01 3 93733383 93733383 C G STX19 Missense_Mutation p.G244A 0.07 tolerated(0.32) probably_damaging(1) TCGA-IG-A4P3-01 4 100870839 100870839 G A H2AFZ Missense_Mutation p.S21L 0.50 tolerated(0.13) benign(0.11) TCGA-IG-A4P3-01 4 103720628 103720628 C G UBE2D3 Missense_Mutation p.D114H 0.29 deleterious_low_confidence(0) probably_damaging(0.949) TCGA-IG-A4P3-01 4 106588313 106588313 C T ARHGEF38 Missense_Mutation p.H573Y 0.21 tolerated(0.49) benign(0.09) TCGA-IG-A4P3-01 4 128819601 128819601 G C PLK4 Missense_Mutation p.E940Q 0.17 tolerated(0.29) benign(0.177) TCGA-IG-A4P3-01 4 151153530 151153530 G A DCLK2 Silent p.V464V 0.18 TCGA-IG-A4P3-01 4 159092457 159092457 C A FAM198B Missense_Mutation p.R24L 0.45 tolerated(0.19) benign(0.002) TCGA-IG-A4P3-01 4 167023330 167023330 C T TLL1 3'UTR 0.15 TCGA-IG-A4P3-01 4 169377190 169377190 T A DDX60L Missense_Mutation p.L279F 0.37 deleterious(0.04) possibly_damaging(0.862) TCGA-IG-A4P3-01 4 17600162 17600162 C G LAP3 Silent p.L387L 0.24 TCGA-IG-A4P3-01 4 177052858 177052858 G C WDR17 Missense_Mutation p.G380A 0.10 tolerated(0.16) benign(0.358) TCGA-IG-A4P3-01 4 41699228 41699228 T C LIMCH1 3'UTR 0.14 TCGA-IG-A4P3-01 4 42505477 42505477 C A ATP8A1 Missense_Mutation p.G714V 0.11 deleterious(0.01) benign(0.301) TCGA-IG-A4P3-01 4 44704577 44704577 A G GNPDA2 3'UTR 0.12 TCGA-IG-A4P3-01 4 46252361 46252361 A C GABRA2 Nonsense_Mutation p.Y440* 0.37 TCGA-IG-A4P3-01 4 53610238 53610238 C T ERVMER34-1 Missense_Mutation p.G484R 0.08 tolerated_low_confidence(0.2) probably_damaging(0.979) TCGA-IG-A4P3-01 4 57215467 57215467 G A AASDH Missense_Mutation p.S817L 0.16 deleterious(0) probably_damaging(0.97) TCGA-IG-A4P3-01 4 88957371 88957371 G T PKD2 Splice_Site p.X237_splice 0.33 TCGA-IG-A4P3-01 5 101572434 101572434 G C SLCO4C1 3'UTR 0.11 TCGA-IG-A4P3-01 5 140604233 140604233 C G PCDHB14 Missense_Mutation p.Q386E 0.13 tolerated_low_confidence(0.11) benign(0.26) TCGA-IG-A4P3-01 5 140799311 140799311 G C PCDHGB7 Missense_Mutation p.V629L 0.21 deleterious(0.02) benign(0.05) TCGA-IG-A4P3-01 5 143853706 143853706 A C KCTD16 3'UTR 0.19 TCGA-IG-A4P3-01 5 149792285 149792285 G C CD74 Missense_Mutation p.R10G 0.18 tolerated_low_confidence(0.13) benign(0) TCGA-IG-A4P3-01 5 150088540 150088540 C T DCTN4 3'Flank 0.16 TCGA-IG-A4P3-01 5 150095155 150095155 C T DCTN4 Missense_Mutation p.E388K 0.10 tolerated(0.18) benign(0.046) TCGA-IG-A4P3-01 5 158158109 158158109 G C EBF1 Missense_Mutation p.R365G 0.35 deleterious(0.01) possibly_damaging(0.707) TCGA-IG-A4P3-01 5 162945935 162945935 A T MAT2B 3'UTR 0.11 TCGA-IG-A4P3-01 5 2747574 2747574 C T IRX2 Intron 0.27 TCGA-IG-A4P3-01 5 70782376 70782376 G C BDP1 Missense_Mutation p.E379Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-IG-A4P3-01 5 75888710 75888710 G A IQGAP2 Silent p.L289L 0.12 TCGA-IG-A4P3-01 5 79095325 79095325 C T CMYA5 Silent p.F4032F 0.28 TCGA-IG-A4P3-01 6 10803989 10803989 G C MAK Missense_Mutation p.I209M 0.25 deleterious(0.01) probably_damaging(0.961) TCGA-IG-A4P3-01 6 109003415 109003415 C T FOXO3 3'UTR 0.22 TCGA-IG-A4P3-01 6 110112718 110112718 C T FIG4 Nonsense_Mutation p.Q774* 0.23 TCGA-IG-A4P3-01 6 12122460 12122460 A T HIVEP1 Missense_Mutation p.K811M 0.23 deleterious(0) probably_damaging(1) TCGA-IG-A4P3-01 6 132031038 132031038 C G CTAGE9 Missense_Mutation p.E374Q 0.26 tolerated(0.06) possibly_damaging(0.607) TCGA-IG-A4P3-01 6 136664548 136664548 G A MAP7 3'Flank 0.25 TCGA-IG-A4P3-01 6 137015331 137015331 C T MAP3K5 Missense_Mutation p.M400I 0.16 tolerated(0.63) benign(0.001) TCGA-IG-A4P3-01 6 147885655 147885655 T G SAMD5 3'UTR 0.09 TCGA-IG-A4P3-01 6 152675868 152675868 C T SYNE1 Missense_Mutation p.E3618K 0.19 probably_damaging(0.997) TCGA-IG-A4P3-01 6 152792774 152792774 G A SYNE1 Silent p.Y530Y 0.18 TCGA-IG-A4P3-01 6 170117959 170117959 C G PHF10 Silent p.L123L 0.22 TCGA-IG-A4P3-01 6 30954627 30954627 C T MUC21 Silent p.A225A 0.35 TCGA-IG-A4P3-01 6 38919237 38919237 T G DNAH8 Missense_Mutation p.L3914R 0.23 probably_damaging(1) TCGA-IG-A4P3-01 6 41567156 41567156 G C FOXP4 3'UTR 0.17 TCGA-IG-A4P3-01 6 55039452 55039452 G A HCRTR2 Missense_Mutation p.E23K 0.37 tolerated(0.8) benign(0.006) TCGA-IG-A4P3-01 6 56329512 56329512 G C DST Intron 0.19 TCGA-IG-A4P3-01 6 65300411 65300411 A C EYS Missense_Mutation p.D1783E 0.17 tolerated_low_confidence(0.15) benign(0.183) TCGA-IG-A4P3-01 6 75974998 75974998 G A TMEM30A Silent p.Y134Y 0.23 TCGA-IG-A4P3-01 6 87968551 87968551 C T ZNF292 Missense_Mutation p.S1735L 0.09 deleterious_low_confidence(0.01) benign(0.434) TCGA-IG-A4P3-01 6 88853810 88853810 A T CNR1 Missense_Mutation p.I395N 0.15 deleterious(0) probably_damaging(0.987) TCGA-IG-A4P3-01 6 90575968 90575968 C G CASP8AP2 RNA 0.37 TCGA-IG-A4P3-01 6 90577632 90577632 C G CASP8AP2 RNA 0.27 TCGA-IG-A4P3-01 6 90578545 90578545 C G CASP8AP2 RNA 0.26 TCGA-IG-A4P3-01 7 102119272 102119272 G C POLR2J Silent p.L12L 0.24 TCGA-IG-A4P3-01 7 128502673 128502673 G C ATP6V1F 5'Flank 0.38 TCGA-IG-A4P3-01 7 142622526 142622526 A C TRPV5 Intron 0.35 TCGA-IG-A4P3-01 7 143632789 143632789 A C OR2F2 Missense_Mutation p.N155T 0.21 tolerated(0.19) benign(0.124) TCGA-IG-A4P3-01 7 144069488 144069488 C T ARHGEF5 Silent p.F1314F 0.17 TCGA-IG-A4P3-01 7 148950660 148950660 C A ZNF212 Silent p.V214V 0.21 TCGA-IG-A4P3-01 7 18706043 18706043 G A HDAC9 Missense_Mutation p.E559K 0.19 tolerated(0.13) benign(0.138) TCGA-IG-A4P3-01 7 20454505 20454505 A G ITGB8 3'UTR 0.36 TCGA-IG-A4P3-01 7 22765763 22765763 G A IL6 5'UTR 0.09 TCGA-IG-A4P3-01 7 26709727 26709727 C G SKAP2 Missense_Mutation p.D358H 0.30 deleterious(0) probably_damaging(0.971) TCGA-IG-A4P3-01 7 39610125 39610125 A G YAE1D1 Missense_Mutation p.I50M 0.22 deleterious(0) possibly_damaging(0.629) TCGA-IG-A4P3-01 7 44613437 44613437 G C DDX56 Missense_Mutation p.Q20E 0.16 tolerated(0.05) benign(0.01) TCGA-IG-A4P3-01 7 48520703 48520703 C G ABCA13 Nonsense_Mutation p.S4349* 0.26 TCGA-IG-A4P3-01 7 64167974 64167974 A G ZNF107 Missense_Mutation p.K431R 0.33 tolerated(0.13) probably_damaging(0.928) TCGA-IG-A4P3-01 7 66453338 66453338 G A SBDS 3'UTR 0.17 TCGA-IG-A4P3-01 7 98258711 98258711 T C NPTX2 3'UTR 0.13 TCGA-IG-A4P3-01 8 105001620 105001620 G A RIMS2 Missense_Mutation p.M1005I 0.15 tolerated_low_confidence(0.44) benign(0.001) TCGA-IG-A4P3-01 8 105456593 105456593 C T DPYS Missense_Mutation p.E226K 0.30 deleterious(0) probably_damaging(1) TCGA-IG-A4P3-01 8 105456626 105456626 C T DPYS Missense_Mutation p.E215K 0.28 deleterious(0) possibly_damaging(0.815) TCGA-IG-A4P3-01 8 113256737 113256737 G A CSMD3 Missense_Mutation p.H3430Y 0.24 tolerated(0.28) benign(0.002) TCGA-IG-A4P3-01 8 12879455 12879455 C T KIAA1456 Silent p.L423L 0.43 TCGA-IG-A4P3-01 8 134125817 134125817 C G TG Missense_Mutation p.S2575C 0.15 deleterious(0.05) possibly_damaging(0.781) TCGA-IG-A4P3-01 8 16021760 16021760 C T MSR1 Missense_Mutation p.E211K 0.31 tolerated(0.27) benign(0.341) TCGA-IG-A4P3-01 8 19824479 19824479 C G LPL 3'UTR 0.24 TCGA-IG-A4P3-01 8 37698775 37698775 G A GPR124 Silent p.L973L 0.10 TCGA-IG-A4P3-01 8 38021034 38021034 G A LSM1 3'UTR 0.08 TCGA-IG-A4P3-01 8 54764502 54764502 C T RGS20 Missense_Mutation p.H15Y 0.26 tolerated_low_confidence(0.14) benign(0.002) TCGA-IG-A4P3-01 8 66753636 66753636 G A PDE7A Silent p.F36F 0.18 TCGA-IG-A4P3-01 8 94738686 94738686 C G FAM92A1 Nonsense_Mutation p.S241* 0.28 TCGA-IG-A4P3-01 8 95718708 95718708 T G ESRP1 3'UTR 0.50 TCGA-IG-A4P3-01 9 130374641 130374641 C T STXBP1 5'UTR 0.41 TCGA-IG-A4P3-01 9 131457259 131457259 C T SET 3'UTR 0.11 TCGA-IG-A4P3-01 9 137734324 137734324 G C COL5A1 3'UTR 0.33 TCGA-IG-A4P3-01 9 26993489 26993489 A T LRRC19 3'UTR 0.21 TCGA-IG-A4P3-01 9 90344621 90344621 G T CTSL Missense_Mutation p.G252V 0.56 deleterious(0.04) probably_damaging(0.926) TCGA-IG-A4P3-01 9 98729010 98729010 C T ERCC6L2 3'UTR 0.31 TCGA-IG-A4P3-01 9 99521732 99521732 A T ZNF510 Nonsense_Mutation p.Y460* 0.33 TCGA-IG-A4P3-01 X 127185305 127185305 A C ACTRT1 Missense_Mutation p.L294R 0.43 deleterious(0) benign(0.23) TCGA-IG-A4P3-01 X 130678783 130678783 G A OR13H1 Missense_Mutation p.V246M 0.32 deleterious(0) probably_damaging(0.999) TCGA-IG-A4P3-01 X 135429032 135429032 C T GPR112 Missense_Mutation p.S1056L 0.61 deleterious(0.05) benign(0.006) TCGA-IG-A4P3-01 X 142596676 142596676 C G SPANXN3 Missense_Mutation p.E132Q 0.30 tolerated_low_confidence(0.14) probably_damaging(0.968) TCGA-IG-A4P3-01 X 153524131 153524131 C A TKTL1 5'UTR 0.15 TCGA-IG-A4P3-01 X 50339534 50339534 T C SHROOM4 3'UTR 0.56 TCGA-IG-A4P3-01 X 70148789 70148789 G C SLC7A3 Missense_Mutation p.S145C 0.38 deleterious(0) probably_damaging(0.992) TCGA-IG-A4P3-01 X 92964880 92964880 G T FAM133A Missense_Mutation p.K154N 0.48 deleterious_low_confidence(0.04) unknown(0) TCGA-IG-A4QS-01 10 120830510 120830510 C T EIF3A Missense_Mutation p.R210H 0.23 deleterious(0) unknown(0) TCGA-IG-A4QS-01 10 12257743 12257743 C G CDC123 Missense_Mutation p.P81R 0.28 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 10 283566 283566 G A ZMYND11 Silent p.P186P 0.25 TCGA-IG-A4QS-01 10 32307483 32307483 G T KIF5B Missense_Mutation p.Q772K 0.26 tolerated(0.31) benign(0.078) TCGA-IG-A4QS-01 10 45958757 45958757 G A MARCH8 Intron 0.17 TCGA-IG-A4QS-01 10 46143749 46143749 G A ZFAND4 Missense_Mutation p.R188C 0.30 tolerated_low_confidence(0.2) benign(0) TCGA-IG-A4QS-01 10 60029032 60029032 C T CISD1 5'UTR 0.30 TCGA-IG-A4QS-01 10 60573843 60573843 A G BICC1 Intron 0.35 TCGA-IG-A4QS-01 10 60994157 60994157 A G PHYHIPL Missense_Mutation p.K67R 0.43 tolerated(0.69) benign(0.014) TCGA-IG-A4QS-01 10 79762008 79762008 C T POLR3A Missense_Mutation p.R769Q 0.65 tolerated(0.29) benign(0.041) TCGA-IG-A4QS-01 10 82279558 82279558 T - TSPAN14 3'UTR 0.40 TCGA-IG-A4QS-01 10 96058377 96058377 G A PLCE1 Missense_Mutation p.M1803I 0.17 tolerated(0.75) benign(0.002) TCGA-IG-A4QS-01 10 96116319 96116319 G C NOC3L Missense_Mutation p.Q180E 0.30 tolerated(1) benign(0) TCGA-IG-A4QS-01 11 106680972 106680972 T - GUCY1A2 Frame_Shift_Del p.H480Pfs*23 0.33 TCGA-IG-A4QS-01 11 107326458 107326458 C A CWF19L2 Missense_Mutation p.K50N 0.28 deleterious(0) probably_damaging(0.988) TCGA-IG-A4QS-01 11 113264253 113264253 A C ANKK1 Missense_Mutation p.K79T 0.13 deleterious(0.02) possibly_damaging(0.831) TCGA-IG-A4QS-01 11 113568120 113568120 C T TMPRSS5 Missense_Mutation p.E117K 0.28 tolerated(0.08) benign(0.004) TCGA-IG-A4QS-01 11 117376309 117376309 G A DSCAML1 Missense_Mutation p.S701L 0.14 tolerated(0.37) benign(0.004) TCGA-IG-A4QS-01 11 118772171 118772171 C A BCL9L Missense_Mutation p.V761L 0.08 benign(0.074) TCGA-IG-A4QS-01 11 118960710 118960710 C A HMBS Missense_Mutation p.P119T 0.11 deleterious(0.01) probably_damaging(1) TCGA-IG-A4QS-01 11 120998499 120998499 G A TECTA Missense_Mutation p.V605M 0.10 deleterious(0.01) benign(0.343) TCGA-IG-A4QS-01 11 123886648 123886648 T C OR10G4 Silent p.L123L 0.31 TCGA-IG-A4QS-01 11 18537669 18537669 C G TSG101 Missense_Mutation p.G57A 0.12 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 11 18733790 18733790 T G IGSF22 Missense_Mutation p.K746T 0.37 deleterious(0.01) possibly_damaging(0.81) TCGA-IG-A4QS-01 11 26563506 26563506 A C ANO3 Missense_Mutation p.S349R 0.09 tolerated(0.08) possibly_damaging(0.889) TCGA-IG-A4QS-01 11 40136104 40136104 G C LRRC4C Missense_Mutation p.P580R 0.21 tolerated_low_confidence(0.27) benign(0.003) TCGA-IG-A4QS-01 11 40136422 40136422 T G LRRC4C Missense_Mutation p.N474T 0.22 tolerated(0.65) benign(0) TCGA-IG-A4QS-01 11 51515371 51515371 T C OR4C46 Silent p.F30F 0.20 TCGA-IG-A4QS-01 11 55371556 55371556 T C OR4C11 Silent p.Q98Q 0.11 TCGA-IG-A4QS-01 11 55563202 55563202 T C OR5D14 Silent p.F57F 0.17 TCGA-IG-A4QS-01 11 55563513 55563513 T A OR5D14 Missense_Mutation p.L161H 0.09 tolerated(0.33) benign(0.359) TCGA-IG-A4QS-01 11 5565851 5565851 T C OR52H1 Silent p.G301G 0.15 TCGA-IG-A4QS-01 11 56114008 56114008 T C OR8K1 Missense_Mutation p.L165P 0.26 deleterious_low_confidence(0) possibly_damaging(0.778) TCGA-IG-A4QS-01 11 66101564 66101564 G A RIN1 Missense_Mutation p.R473W 0.30 deleterious(0) probably_damaging(0.999) TCGA-IG-A4QS-01 11 72554464 72554464 A T FCHSD2 Intron 0.14 TCGA-IG-A4QS-01 11 74876930 74876930 G A SLCO2B1 Silent p.A128A 0.39 TCGA-IG-A4QS-01 11 7488542 7488542 A G SYT9 3'UTR 0.28 TCGA-IG-A4QS-01 11 75439077 75439077 T A MOGAT2 Missense_Mutation p.L180M 0.08 tolerated(0.12) benign(0.271) TCGA-IG-A4QS-01 11 94732169 94732169 A G KDM4D 3'UTR 0.21 TCGA-IG-A4QS-01 12 100043066 100043066 G A FAM71C Missense_Mutation p.G206R 0.13 deleterious(0.04) benign(0.002) TCGA-IG-A4QS-01 12 109937476 109937476 T A UBE3B Missense_Mutation p.L327I 0.11 deleterious(0.05) possibly_damaging(0.496) TCGA-IG-A4QS-01 12 21207483 21207483 G T SLCO1B7 Missense_Mutation p.R485M 0.40 tolerated(0.17) benign(0.022) TCGA-IG-A4QS-01 12 21243002 21243002 G A SLCO1B7 Missense_Mutation p.D629N 0.44 tolerated(1) benign(0) TCGA-IG-A4QS-01 12 3392805 3392805 T C TSPAN9 3'UTR 0.43 TCGA-IG-A4QS-01 12 40964474 40964474 A C MUC19 3'UTR 0.20 TCGA-IG-A4QS-01 12 41316209 41316209 G A CNTN1 Missense_Mutation p.E127K 0.16 deleterious(0.05) probably_damaging(0.925) TCGA-IG-A4QS-01 12 5021058 5021058 G A KCNA1 Missense_Mutation p.V172I 0.43 tolerated(0.29) benign(0) TCGA-IG-A4QS-01 12 52776234 52776234 G A KRT84 Missense_Mutation p.T300M 0.16 tolerated(0.24) possibly_damaging(0.88) TCGA-IG-A4QS-01 12 64174918 64174918 G A TMEM5 Missense_Mutation p.D97N 0.44 tolerated(0.16) benign(0.006) TCGA-IG-A4QS-01 12 6709723 6709723 C T CHD4 Missense_Mutation p.R347Q 0.44 tolerated(0.28) benign(0.002) TCGA-IG-A4QS-01 12 80927813 80927813 A C PTPRQ Missense_Mutation p.T896P 0.15 tolerated(0.14) benign(0.162) TCGA-IG-A4QS-01 12 81675120 81675120 T G PPFIA2 Missense_Mutation p.E1043A 0.33 deleterious(0) probably_damaging(0.911) TCGA-IG-A4QS-01 12 9144868 9144868 T C KLRG1 Missense_Mutation p.L50P 0.32 deleterious(0) probably_damaging(0.971) TCGA-IG-A4QS-01 12 91552198 91552198 T C DCN Missense_Mutation p.K138R 0.23 tolerated(0.39) benign(0.013) TCGA-IG-A4QS-01 12 93804925 93804925 C T UBE2N Missense_Mutation p.E61K 0.50 tolerated(0.06) benign(0.184) TCGA-IG-A4QS-01 13 102105108 102105108 T C ITGBL1 5'UTR 0.47 TCGA-IG-A4QS-01 13 29674973 29674973 G A MTUS2 Missense_Mutation p.R847H 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-IG-A4QS-01 13 32870674 32870674 T C FRY 3'UTR 0.23 TCGA-IG-A4QS-01 13 33677604 33677604 G C STARD13 3'UTR 0.12 TCGA-IG-A4QS-01 13 36909527 36909527 A G SPG20 Silent p.T147T 0.27 TCGA-IG-A4QS-01 13 39917592 39917592 T A LHFP 3'UTR 0.42 TCGA-IG-A4QS-01 13 58208305 58208305 T G PCDH17 Missense_Mutation p.F542C 0.43 deleterious(0) possibly_damaging(0.762) TCGA-IG-A4QS-01 13 88328683 88328683 G A SLITRK5 Missense_Mutation p.R347Q 0.33 tolerated(0.07) possibly_damaging(0.449) TCGA-IG-A4QS-01 13 96409994 96409994 G A DNAJC3 Missense_Mutation p.A164T 0.16 tolerated(0.38) benign(0.211) TCGA-IG-A4QS-01 14 24682715 24682715 A G CHMP4A Silent p.H20H 0.19 TCGA-IG-A4QS-01 14 30045776 30045776 A G PRKD1 3'UTR 0.36 TCGA-IG-A4QS-01 14 69926756 69926757 - G SLC39A9 3'UTR 0.24 TCGA-IG-A4QS-01 14 71577606 71577606 G T PCNX 3'UTR 0.21 TCGA-IG-A4QS-01 14 71577607 71577607 A T PCNX 3'UTR 0.21 TCGA-IG-A4QS-01 14 81743371 81743371 T G STON2 Missense_Mutation p.S762R 0.27 tolerated(0.28) possibly_damaging(0.875) TCGA-IG-A4QS-01 15 101169730 101169730 G A ASB7 Missense_Mutation p.M100I 0.27 deleterious(0.03) benign(0.115) TCGA-IG-A4QS-01 15 29410484 29410484 G A APBA2 3'UTR 0.38 TCGA-IG-A4QS-01 15 39885624 39885624 T G THBS1 Missense_Mutation p.F1008V 0.31 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 15 43815519 43815520 AG - MAP1A Frame_Shift_Del p.E617Gfs*28 0.39 TCGA-IG-A4QS-01 15 73595469 73595469 A T NEO1 3'UTR 0.33 TCGA-IG-A4QS-01 15 78474909 78474909 C A ACSBG1 Missense_Mutation p.D265Y 0.35 deleterious(0) probably_damaging(0.967) TCGA-IG-A4QS-01 15 79755565 79755565 G A KIAA1024 Missense_Mutation p.E819K 0.65 deleterious(0.02) benign(0.419) TCGA-IG-A4QS-01 15 83935797 83935798 - G BNC1 Frame_Shift_Ins p.M76Hfs*17 0.36 TCGA-IG-A4QS-01 15 93588423 93588423 G A RGMA Silent p.G394G 0.68 TCGA-IG-A4QS-01 16 23555876 23555876 C A EARS2 Missense_Mutation p.E148D 0.41 tolerated(0.16) benign(0.17) TCGA-IG-A4QS-01 16 29810459 29810459 G A KIF22 Missense_Mutation p.R238Q 0.24 tolerated(0.21) probably_damaging(0.999) TCGA-IG-A4QS-01 16 31094516 31094518 CTC - ZNF646 3'UTR 0.29 TCGA-IG-A4QS-01 16 32077614 32077614 A T IGHV3OR16-9 Missense_Mutation p.N77Y 0.12 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-IG-A4QS-01 16 46710559 46710559 G A VPS35 Missense_Mutation p.R284W 0.32 deleterious(0.01) probably_damaging(0.948) TCGA-IG-A4QS-01 16 67984933 67984933 T G SLC12A4 Missense_Mutation p.D445A 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-IG-A4QS-01 16 88496484 88496484 C T ZNF469 Missense_Mutation p.A869V 0.23 benign(0.001) TCGA-IG-A4QS-01 16 88804630 88804630 G A PIEZO1 Intron 0.12 TCGA-IG-A4QS-01 17 10431082 10431082 C T MYH2 Missense_Mutation p.R1285H 0.28 deleterious(0.02) benign(0.047) TCGA-IG-A4QS-01 17 12656029 12656029 T G MYOCD Missense_Mutation p.F475C 0.25 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 17 1548969 1548969 G A SCARF1 Missense_Mutation p.P8L 0.96 tolerated(0.29) benign(0.001) TCGA-IG-A4QS-01 17 18922878 18922878 G A SLC5A10 Missense_Mutation p.V478I 0.71 tolerated(1) benign(0.002) TCGA-IG-A4QS-01 17 43545713 43545713 T C PLEKHM1 Silent p.V390V 0.26 TCGA-IG-A4QS-01 17 45788715 45788715 G T TBKBP1 3'UTR 0.51 TCGA-IG-A4QS-01 17 67097074 67097074 T C ABCA6 Missense_Mutation p.D959G 0.28 deleterious(0.05) probably_damaging(0.992) TCGA-IG-A4QS-01 17 72926823 72926823 C T OTOP2 Missense_Mutation p.R365C 0.27 deleterious(0) probably_damaging(0.999) TCGA-IG-A4QS-01 17 74274083 74274083 G A QRICH2 Missense_Mutation p.P1536S 0.41 tolerated(0.08) possibly_damaging(0.821) TCGA-IG-A4QS-01 17 74730664 74730665 AA - SRSF2 3'UTR 0.52 TCGA-IG-A4QS-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.75 TCGA-IG-A4QS-01 17 7637950 7637950 A T DNAH2 Missense_Mutation p.K301M 0.73 possibly_damaging(0.869) TCGA-IG-A4QS-01 17 79256060 79256060 G A SLC38A10 Missense_Mutation p.R144W 0.16 deleterious(0) probably_damaging(0.913) TCGA-IG-A4QS-01 17 79826044 79826044 G A ARHGDIA 3'UTR 0.60 TCGA-IG-A4QS-01 18 28935039 28935039 C T DSG1 Silent p.G960G 0.82 TCGA-IG-A4QS-01 18 33750037 33750037 G A ELP2 Nonsense_Mutation p.W761* 0.35 TCGA-IG-A4QS-01 18 6171916 6171916 T G L3MBTL4 Missense_Mutation p.K336T 0.28 tolerated(0.55) probably_damaging(0.957) TCGA-IG-A4QS-01 18 64172528 64172528 A C CDH19 Missense_Mutation p.L614V 0.75 deleterious(0.02) benign(0.066) TCGA-IG-A4QS-01 18 65177893 65177893 T G DSEL 3'UTR 0.28 TCGA-IG-A4QS-01 18 70534522 70534522 A T NETO1 Missense_Mutation p.I2N 0.27 deleterious_low_confidence(0) benign(0.014) TCGA-IG-A4QS-01 18 8253277 8253277 T G PTPRM Silent p.T873T 0.55 TCGA-IG-A4QS-01 19 1062171 1062171 C T ABCA7 Silent p.S1857S 0.81 TCGA-IG-A4QS-01 19 10812147 10812147 C T QTRT1 Missense_Mutation p.A4V 0.77 tolerated(0.11) benign(0.002) TCGA-IG-A4QS-01 19 22155862 22155862 A G ZNF208 Silent p.I658I 0.92 TCGA-IG-A4QS-01 19 35557225 35557225 C T HPN 3'UTR 0.27 TCGA-IG-A4QS-01 19 36395345 36395345 C T TYROBP 3'UTR 0.48 TCGA-IG-A4QS-01 19 37681019 37681019 A T ZNF585B Missense_Mutation p.F36I 0.18 deleterious(0) probably_damaging(0.998) TCGA-IG-A4QS-01 19 41807528 41807528 G A HNRNPUL1 Missense_Mutation p.E536K 0.23 deleterious(0) unknown(0) TCGA-IG-A4QS-01 19 41939275 41939275 G A ATP5SL Silent p.L172L 0.27 TCGA-IG-A4QS-01 19 44832455 44832455 G A ZNF112 Nonsense_Mutation p.Q625* 0.26 TCGA-IG-A4QS-01 19 49793843 49793843 G T SLC6A16 Intron 0.39 TCGA-IG-A4QS-01 19 52383627 52383628 - T ZNF577 Frame_Shift_Ins p.N3Kfs*99 0.18 TCGA-IG-A4QS-01 19 54849483 54849483 C T LILRA4 Missense_Mutation p.A127T 0.23 deleterious(0) possibly_damaging(0.908) TCGA-IG-A4QS-01 19 56416458 56416458 G A NLRP13 Missense_Mutation p.S823L 0.36 deleterious(0.03) possibly_damaging(0.89) TCGA-IG-A4QS-01 19 56736039 56736039 T G ZSCAN5A Missense_Mutation p.K126T 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-IG-A4QS-01 19 56904638 56904638 G A ZNF582 Intron 0.37 TCGA-IG-A4QS-01 19 58629786 58629786 C T ZSCAN18 5'UTR 0.17 TCGA-IG-A4QS-01 19 58640556 58640556 G A ZNF329 Silent p.P105P 0.24 TCGA-IG-A4QS-01 19 9721115 9721115 G A ZNF561 Missense_Mutation p.R408C 0.77 deleterious(0.03) benign(0.024) TCGA-IG-A4QS-01 1 107683718 107683718 G C NTNG1 5'UTR 0.29 TCGA-IG-A4QS-01 1 109148850 109148850 A - FAM102B Frame_Shift_Del p.G90Vfs*13 0.25 TCGA-IG-A4QS-01 1 13498186 13498186 C T PRAMEF16 3'UTR 0.04 TCGA-IG-A4QS-01 1 152882791 152882791 T C IVL Missense_Mutation p.L173P 0.20 tolerated(0.16) unknown(0) TCGA-IG-A4QS-01 1 156203459 156203459 C A PMF1 Missense_Mutation p.A103D 0.15 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-IG-A4QS-01 1 156436095 156436095 A C MEF2D 3'UTR 0.21 TCGA-IG-A4QS-01 1 158670013 158670013 T G OR6K2 Missense_Mutation p.T144P 0.18 tolerated(0.09) possibly_damaging(0.811) TCGA-IG-A4QS-01 1 160099104 160099104 G C ATP1A2 Missense_Mutation p.E459Q 0.05 tolerated(0.05) benign(0.366) TCGA-IG-A4QS-01 1 161160598 161160598 T C ADAMTS4 3'UTR 0.50 TCGA-IG-A4QS-01 1 165386426 165386426 G A RXRG Silent p.G158G 0.29 TCGA-IG-A4QS-01 1 179526362 179526362 C T NPHS2 Missense_Mutation p.V180M 0.35 deleterious(0) possibly_damaging(0.876) TCGA-IG-A4QS-01 1 179966116 179966116 G A CEP350 Missense_Mutation p.R275Q 0.42 benign(0.012) TCGA-IG-A4QS-01 1 182026619 182026619 G A ZNF648 Missense_Mutation p.A176V 0.36 tolerated(0.26) benign(0.005) TCGA-IG-A4QS-01 1 190250831 190250831 A G BRINP3 Missense_Mutation p.F96L 0.30 tolerated(0.31) probably_damaging(0.96) TCGA-IG-A4QS-01 1 198725126 198725126 T G PTPRC Missense_Mutation p.I1246S 0.35 deleterious(0) benign(0.311) TCGA-IG-A4QS-01 1 214557671 214557671 T G PTPN14 Missense_Mutation p.K509N 0.47 tolerated(0.7) benign(0.031) TCGA-IG-A4QS-01 1 220825478 220825478 A G MARK1 Silent p.E574E 0.41 TCGA-IG-A4QS-01 1 220835336 220835336 T G MARK1 Missense_Mutation p.L739W 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-IG-A4QS-01 1 237948142 237948142 C T RYR2 Missense_Mutation p.S4377L 0.32 possibly_damaging(0.858) TCGA-IG-A4QS-01 1 24687446 24687446 C T STPG1 Missense_Mutation p.V275M 0.28 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 1 248059417 248059417 T G OR2W3 Missense_Mutation p.F177V 0.30 deleterious(0) probably_damaging(0.973) TCGA-IG-A4QS-01 1 248366816 248366816 G T OR2M3 Missense_Mutation p.W149C 0.27 deleterious(0.02) probably_damaging(1) TCGA-IG-A4QS-01 1 248756469 248756469 A G OR2T10 Silent p.L201L 0.36 TCGA-IG-A4QS-01 1 248756934 248756934 T G OR2T10 Missense_Mutation p.I46L 0.40 deleterious(0.03) benign(0.117) TCGA-IG-A4QS-01 1 34037135 34037135 G A CSMD2 Nonsense_Mutation p.R2654* 0.49 TCGA-IG-A4QS-01 1 40776803 40776803 G A COL9A2 Missense_Mutation p.R198C 0.24 deleterious(0.01) possibly_damaging(0.898) TCGA-IG-A4QS-01 1 67424600 67424600 C T MIER1 Nonsense_Mutation p.Q190* 0.29 TCGA-IG-A4QS-01 1 71477821 71477821 G T PTGER3 Intron 0.53 TCGA-IG-A4QS-01 20 11906487 11906487 C A BTBD3 3'UTR 0.18 TCGA-IG-A4QS-01 20 13055028 13055028 A C SPTLC3 Missense_Mutation p.N164H 0.10 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 20 13098334 13098334 A G SPTLC3 Missense_Mutation p.S372G 0.22 deleterious(0) probably_damaging(0.999) TCGA-IG-A4QS-01 20 16021881 16021881 A G MACROD2 Missense_Mutation p.S397G 0.24 deleterious_low_confidence(0.01) benign(0.275) TCGA-IG-A4QS-01 20 21687512 21687512 G A PAX1 Silent p.P241P 0.45 TCGA-IG-A4QS-01 20 30659496 30659496 G T HCK Missense_Mutation p.V32F 0.18 tolerated_low_confidence(0.06) benign(0.077) TCGA-IG-A4QS-01 20 33864536 33864536 C T MMP24 3'UTR 0.24 TCGA-IG-A4QS-01 20 36870238 36870238 A C KIAA1755 Missense_Mutation p.L99V 0.25 deleterious(0) benign(0.434) TCGA-IG-A4QS-01 20 40709397 40709397 T G PTPRT 3'UTR 0.15 TCGA-IG-A4QS-01 20 4202559 4202559 C T ADRA1D Missense_Mutation p.G444S 0.43 tolerated(0.32) benign(0.002) TCGA-IG-A4QS-01 20 45838505 45838505 G A ZMYND8 3'Flank 0.19 TCGA-IG-A4QS-01 20 57430199 57430199 C T GNAS Nonsense_Mutation p.Q627* 0.38 TCGA-IG-A4QS-01 20 58587737 58587737 A G CDH26 Silent p.K817K 0.08 TCGA-IG-A4QS-01 20 62598760 62598760 C T ZNF512B Missense_Mutation p.E80K 0.21 deleterious(0) probably_damaging(0.989) TCGA-IG-A4QS-01 21 11020889 11020889 C A BAGE2 RNA 0.25 TCGA-IG-A4QS-01 21 15535844 15535844 C T LIPI Missense_Mutation p.G322D 0.11 deleterious(0.01) possibly_damaging(0.449) TCGA-IG-A4QS-01 21 19635123 19635123 T C CHODL Missense_Mutation p.L217P 0.75 deleterious(0) probably_damaging(0.957) TCGA-IG-A4QS-01 21 33374456 33374456 G A HUNK 3'UTR 0.78 TCGA-IG-A4QS-01 21 39754133 39754133 A C ERG 3'UTR 0.50 TCGA-IG-A4QS-01 22 21348441 21348441 G T LZTR1 Missense_Mutation p.A500S 0.71 tolerated(0.82) benign(0.007) TCGA-IG-A4QS-01 22 32621756 32621756 T G SLC5A4 Missense_Mutation p.Q445H 0.40 deleterious(0) possibly_damaging(0.908) TCGA-IG-A4QS-01 22 42057349 42057349 G A XRCC6 Missense_Mutation p.A513T 0.29 tolerated(0.55) benign(0.003) TCGA-IG-A4QS-01 2 116447470 116447470 G A DPP10 Silent p.A187A 0.39 TCGA-IG-A4QS-01 2 119727832 119727832 A T MARCO Missense_Mutation p.Q114H 0.27 deleterious(0.04) possibly_damaging(0.648) TCGA-IG-A4QS-01 2 141208225 141208225 A G LRP1B Silent p.R3323R 0.18 TCGA-IG-A4QS-01 2 166848866 166848866 A G SCN1A Missense_Mutation p.L1640P 0.21 deleterious(0) probably_damaging(0.98) TCGA-IG-A4QS-01 2 166897743 166897743 A C SCN1A Missense_Mutation p.L805V 0.25 deleterious(0.02) probably_damaging(0.962) TCGA-IG-A4QS-01 2 167134735 167134735 A C SCN9A Missense_Mutation p.F800C 0.56 deleterious(0) probably_damaging(0.964) TCGA-IG-A4QS-01 2 167334095 167334095 A C SCN7A Missense_Mutation p.L38V 0.20 tolerated(0.32) benign(0.009) TCGA-IG-A4QS-01 2 179644609 179644609 T C TTN Intron 0.20 TCGA-IG-A4QS-01 2 185803925 185803925 A G ZNF804A 3'UTR 0.15 TCGA-IG-A4QS-01 2 1891271 1891272 - T MYT1L Frame_Shift_Ins p.D876Gfs*34 0.28 TCGA-IG-A4QS-01 2 196834703 196834703 A C DNAH7 Missense_Mutation p.L725R 0.29 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 2 198968589 198968589 A C PLCL1 Missense_Mutation p.K1012Q 0.30 tolerated(0.06) possibly_damaging(0.607) TCGA-IG-A4QS-01 2 202483858 202483858 C G ALS2CR11 5'UTR 0.26 TCGA-IG-A4QS-01 2 208866231 208866231 G T PLEKHM3 Missense_Mutation p.L45M 0.57 deleterious(0.03) probably_damaging(0.968) TCGA-IG-A4QS-01 2 21233221 21233221 T G APOB Missense_Mutation p.Q2173H 0.29 probably_damaging(0.993) TCGA-IG-A4QS-01 2 215013957 215013957 A C SPAG16 Missense_Mutation p.S563R 0.25 tolerated(0.25) possibly_damaging(0.677) TCGA-IG-A4QS-01 2 215866355 215866355 A G ABCA12 Silent p.I930I 0.27 TCGA-IG-A4QS-01 2 215890500 215890500 T - ABCA12 Frame_Shift_Del p.N395Ifs*2 0.17 TCGA-IG-A4QS-01 2 217148414 217148414 G C MARCH4 Silent p.V185V 0.30 TCGA-IG-A4QS-01 2 219888945 219888945 C T CCDC108 Missense_Mutation p.R796H 0.31 tolerated(0.1) probably_damaging(0.979) TCGA-IG-A4QS-01 2 225664895 225664895 C T DOCK10 Silent p.L1493L 0.25 TCGA-IG-A4QS-01 2 232018342 232018342 A C PSMD1 Missense_Mutation p.K727T 0.21 deleterious(0) possibly_damaging(0.844) TCGA-IG-A4QS-01 2 50850700 50850700 A G NRXN1 Silent p.L329L 0.30 TCGA-IG-A4QS-01 2 56612188 56612188 T - CCDC85A 3'UTR 0.27 TCGA-IG-A4QS-01 2 61345225 61345225 C T KIAA1841 Nonsense_Mutation p.R668* 0.08 TCGA-IG-A4QS-01 2 72356568 72356568 G T CYP26B1 3'UTR 0.30 TCGA-IG-A4QS-01 2 90212211 90212211 A C IGKV3D-11 Missense_Mutation p.E101D 0.27 tolerated(0.15) benign(0.154) TCGA-IG-A4QS-01 3 107096766 107096766 G A CCDC54 Missense_Mutation p.R111K 0.19 tolerated(0.09) benign(0.016) TCGA-IG-A4QS-01 3 108868897 108868897 G A RP11-59E19.1 RNA 0.12 TCGA-IG-A4QS-01 3 113378632 113378632 G A KIAA2018 Missense_Mutation p.L633F 0.70 probably_damaging(0.999) TCGA-IG-A4QS-01 3 121200659 121200659 C T POLQ Missense_Mutation p.V1991M 0.17 deleterious(0.01) possibly_damaging(0.565) TCGA-IG-A4QS-01 3 121383820 121383820 G A GOLGB1 Nonsense_Mutation p.Q3210* 0.21 TCGA-IG-A4QS-01 3 140282851 140282851 T C CLSTN2 Missense_Mutation p.L844P 0.27 deleterious(0) probably_damaging(0.995) TCGA-IG-A4QS-01 3 142747238 142747238 C T U2SURP Missense_Mutation p.S479F 0.07 deleterious(0) probably_damaging(0.999) TCGA-IG-A4QS-01 3 15064742 15064742 C T NR2C2 Missense_Mutation p.R217W 0.16 deleterious(0) possibly_damaging(0.821) TCGA-IG-A4QS-01 3 151176330 151176330 C T IGSF10 Silent p.P56P 0.49 TCGA-IG-A4QS-01 3 157188234 157188234 T A VEPH1 Missense_Mutation p.I75F 0.15 deleterious(0) probably_damaging(0.969) TCGA-IG-A4QS-01 3 184106421 184106421 T C CHRD Silent p.D867D 0.26 TCGA-IG-A4QS-01 3 186917948 186917948 T G RTP1 3'UTR 0.33 TCGA-IG-A4QS-01 3 195410697 195410697 G A SDHAP2 RNA 0.16 TCGA-IG-A4QS-01 3 36897858 36897858 A C TRANK1 Missense_Mutation p.L1075V 0.35 tolerated(0.16) benign(0.231) TCGA-IG-A4QS-01 3 53809943 53809943 C G CACNA1D Missense_Mutation p.I1431M 0.44 deleterious(0) probably_damaging(0.998) TCGA-IG-A4QS-01 3 54958788 54958788 T G LRTM1 Missense_Mutation p.Q154H 0.15 tolerated(0.21) benign(0.063) TCGA-IG-A4QS-01 3 66460607 66460607 G A LRIG1 Missense_Mutation p.S294F 0.20 deleterious(0.03) benign(0.014) TCGA-IG-A4QS-01 3 68781656 68781656 T G FAM19A4 3'UTR 0.18 TCGA-IG-A4QS-01 3 7188173 7188173 A G GRM7 Missense_Mutation p.E185G 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-IG-A4QS-01 3 74347115 74347115 T C CNTN3 Silent p.A798A 0.41 TCGA-IG-A4QS-01 3 77147238 77147238 C T ROBO2 Silent p.G61G 0.43 TCGA-IG-A4QS-01 3 89530970 89530970 T G EPHA3 3'UTR 0.36 TCGA-IG-A4QS-01 3 93617396 93617396 C T PROS1 Missense_Mutation p.E249K 0.10 deleterious(0.02) possibly_damaging(0.489) TCGA-IG-A4QS-01 3 93699148 93699148 T G ARL13B 5'UTR 0.57 TCGA-IG-A4QS-01 4 110433175 110433175 C - SEC24B Frame_Shift_Del p.F615Lfs*18 0.31 TCGA-IG-A4QS-01 4 123264574 123264574 G T KIAA1109 Missense_Mutation p.G4121V 0.39 benign(0.146) TCGA-IG-A4QS-01 4 126336175 126336175 A G FAT4 Silent p.Q2019Q 0.35 TCGA-IG-A4QS-01 4 128726323 128726323 G C HSPA4L Missense_Mutation p.D361H 0.44 tolerated(0.05) benign(0.088) TCGA-IG-A4QS-01 4 155411241 155411241 C T DCHS2 Missense_Mutation p.V423I 0.19 deleterious(0.04) benign(0.041) TCGA-IG-A4QS-01 4 156137969 156137969 C A NPY2R 3'UTR 0.51 TCGA-IG-A4QS-01 4 16900100 16900100 G T LDB2 Missense_Mutation p.S3R 0.21 tolerated_low_confidence(0.09) benign(0.024) TCGA-IG-A4QS-01 4 177046415 177046415 T C WDR17 Silent p.S257S 0.27 TCGA-IG-A4QS-01 4 177052846 177052846 T G WDR17 Missense_Mutation p.L376R 0.44 deleterious(0) probably_damaging(0.939) TCGA-IG-A4QS-01 4 26673809 26673809 G T TBC1D19 Missense_Mutation p.V235F 0.24 deleterious(0) possibly_damaging(0.864) TCGA-IG-A4QS-01 4 36130200 36130202 CAT - ARAP2 In_Frame_Del p.D1198del 0.20 TCGA-IG-A4QS-01 4 66201750 66201750 C T EPHA5 Missense_Mutation p.E918K 0.33 deleterious(0) benign(0.143) TCGA-IG-A4QS-01 4 7744452 7744452 T C SORCS2 3'UTR 0.20 TCGA-IG-A4QS-01 5 100191934 100191934 A - ST8SIA4 Frame_Shift_Del p.W224Gfs*20 0.28 TCGA-IG-A4QS-01 5 121761185 121761185 C T SNCAIP Missense_Mutation p.R381C 0.36 deleterious(0.02) probably_damaging(0.991) TCGA-IG-A4QS-01 5 128301754 128301754 C T SLC27A6 5'UTR 0.31 TCGA-IG-A4QS-01 5 129039996 129039996 A C ADAMTS19 Missense_Mutation p.K1069T 0.31 deleterious(0.03) probably_damaging(0.978) TCGA-IG-A4QS-01 5 134870106 134870106 C G NEUROG1 3'UTR 0.39 TCGA-IG-A4QS-01 5 176863098 176863098 G A GRK6 Missense_Mutation p.R361Q 0.37 deleterious(0.04) possibly_damaging(0.626) TCGA-IG-A4QS-01 5 178552066 178552066 C T ADAMTS2 Missense_Mutation p.A956T 0.26 tolerated(0.66) benign(0.004) TCGA-IG-A4QS-01 5 180218677 180218677 G A MGAT1 Missense_Mutation p.A432V 0.31 benign(0.315) TCGA-IG-A4QS-01 5 33614421 33614421 G T ADAMTS12 Missense_Mutation p.L817I 0.36 tolerated(0.39) benign(0.058) TCGA-IG-A4QS-01 5 36271359 36271359 A C RANBP3L Missense_Mutation p.F49C 0.34 deleterious(0.02) probably_damaging(0.95) TCGA-IG-A4QS-01 5 41381955 41381955 C A PLCXD3 Missense_Mutation p.S262I 0.38 tolerated(0.41) possibly_damaging(0.746) TCGA-IG-A4QS-01 5 43659311 43659311 G A NNT Missense_Mutation p.M831I 0.39 deleterious(0) probably_damaging(0.989) TCGA-IG-A4QS-01 5 45645460 45645460 A G HCN1 Missense_Mutation p.F226L 0.31 tolerated(0.36) probably_damaging(0.987) TCGA-IG-A4QS-01 5 5239960 5239960 T C ADAMTS16 Silent p.T815T 0.40 TCGA-IG-A4QS-01 5 99921888 99921888 A G FAM174A Silent p.%3D 0.46 TCGA-IG-A4QS-01 6 100841712 100841712 G A SIM1 Silent p.G407G 0.15 TCGA-IG-A4QS-01 6 128134756 128134756 G A THEMIS Missense_Mutation p.R344W 0.13 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 6 135509008 135509008 A G MYB Missense_Mutation p.T60A 0.17 deleterious(0) benign(0.153) TCGA-IG-A4QS-01 6 146350735 146350735 T A GRM1 Missense_Mutation p.L28M 0.57 deleterious_low_confidence(0.05) benign(0.005) TCGA-IG-A4QS-01 6 152552615 152552615 T G SYNE1 Missense_Mutation p.S6984R 0.48 possibly_damaging(0.639) TCGA-IG-A4QS-01 6 165715758 165715758 G A C6orf118 Missense_Mutation p.T18M 0.22 deleterious_low_confidence(0.04) unknown(0) TCGA-IG-A4QS-01 6 24582474 24582474 T C KIAA0319 Intron 0.17 TCGA-IG-A4QS-01 6 30673670 30673675 TCTGAG - MDC1 In_Frame_Del p.S1096_E1097del 0.11 TCGA-IG-A4QS-01 6 31084612 31084612 G A CDSN Silent p.H260H 0.51 TCGA-IG-A4QS-01 6 31741184 31741184 C T VWA7 Missense_Mutation p.R251Q 0.25 tolerated(1) benign(0.002) TCGA-IG-A4QS-01 6 32064958 32064958 G C TNXB Silent p.G224G 0.26 TCGA-IG-A4QS-01 6 39880116 39880116 G T MOCS1 Silent p.A291A 0.25 TCGA-IG-A4QS-01 6 50812188 50812188 G A TFAP2B 3'UTR 0.25 TCGA-IG-A4QS-01 6 53660182 53660182 T A LRRC1 Missense_Mutation p.L43Q 0.21 deleterious(0) possibly_damaging(0.862) TCGA-IG-A4QS-01 6 56966830 56966830 G A ZNF451 Intron 0.38 TCGA-IG-A4QS-01 6 72011416 72011416 T C OGFRL1 Silent p.T340T 0.38 TCGA-IG-A4QS-01 6 85473172 85473172 G A TBX18 Intron 0.25 TCGA-IG-A4QS-01 6 96657973 96657973 T G FUT9 3'UTR 0.31 TCGA-IG-A4QS-01 6 97063607 97063607 T G FHL5 Missense_Mutation p.F272V 0.41 deleterious(0.04) benign(0.243) TCGA-IG-A4QS-01 6 97597747 97597747 C T MMS22L Missense_Mutation p.G1211D 0.36 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 7 107400037 107400037 T A CBLL1 3'UTR 0.37 TCGA-IG-A4QS-01 7 107400039 107400039 T A CBLL1 3'UTR 0.36 TCGA-IG-A4QS-01 7 116417455 116417455 G A MET Missense_Mutation p.C1109Y 0.04 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 7 122635132 122635132 A C TAS2R16 Missense_Mutation p.V186G 0.28 tolerated(0.43) benign(0.007) TCGA-IG-A4QS-01 7 150648207 150648207 G A KCNH2 Silent p.S649S 0.21 TCGA-IG-A4QS-01 7 18806744 18806744 A C HDAC9 Missense_Mutation p.K727T 0.34 deleterious(0.04) possibly_damaging(0.447) TCGA-IG-A4QS-01 7 26400643 26400643 T G SNX10 Missense_Mutation p.F25V 0.20 tolerated(0.5) benign(0.186) TCGA-IG-A4QS-01 7 41730006 41730006 G - INHBA Frame_Shift_Del p.L175Sfs*23 0.33 TCGA-IG-A4QS-01 7 81624226 81624226 A G CACNA2D1 Silent p.S564S 0.32 TCGA-IG-A4QS-01 7 82583544 82583544 T C PCLO Missense_Mutation p.E2242G 0.09 unknown(0) TCGA-IG-A4QS-01 7 82764562 82764562 A G PCLO Silent p.S768S 0.41 TCGA-IG-A4QS-01 7 87031409 87031409 A C ABCB4 3'UTR 0.64 TCGA-IG-A4QS-01 7 99950250 99950250 G A PILRB 5'UTR 0.05 TCGA-IG-A4QS-01 8 104898169 104898169 T C RIMS2 Silent p.L448L 0.06 TCGA-IG-A4QS-01 8 105261742 105261742 A C RIMS2 Missense_Mutation p.K1206T 0.31 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-IG-A4QS-01 8 105436539 105436539 T C DPYS Missense_Mutation p.R391G 0.10 deleterious(0) benign(0.183) TCGA-IG-A4QS-01 8 113277663 113277663 C G CSMD3 Missense_Mutation p.S3222T 0.08 tolerated(0.06) possibly_damaging(0.842) TCGA-IG-A4QS-01 8 113326137 113326137 A T CSMD3 Missense_Mutation p.I2565K 0.09 tolerated(0.27) benign(0.017) TCGA-IG-A4QS-01 8 118825191 118825191 T - EXT1 Frame_Shift_Del p.S548Afs*73 0.77 TCGA-IG-A4QS-01 8 121381666 121381666 T A COL14A1 Silent p.G1751G 0.07 TCGA-IG-A4QS-01 8 125555446 125555446 C T NDUFB9 Missense_Mutation p.R74C 0.14 tolerated(0.17) benign(0.001) TCGA-IG-A4QS-01 8 145110038 145110038 C T OPLAH Missense_Mutation p.R768H 0.06 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 8 16026304 16026304 G A MSR1 Missense_Mutation p.T98M 0.33 tolerated(0.36) benign(0.004) TCGA-IG-A4QS-01 8 2966186 2966186 T G CSMD1 Missense_Mutation p.Q2231H 0.19 benign(0.029) TCGA-IG-A4QS-01 8 37556150 37556150 T G ZNF703 Nonsense_Mutation p.Y577* 0.30 TCGA-IG-A4QS-01 8 49644049 49644049 T G EFCAB1 Missense_Mutation p.E24D 0.23 deleterious(0) probably_damaging(0.999) TCGA-IG-A4QS-01 8 56015128 56015128 A G XKR4 Missense_Mutation p.H27R 0.15 deleterious_low_confidence(0.03) benign(0.227) TCGA-IG-A4QS-01 8 59060627 59060627 G A FAM110B 3'UTR 0.54 TCGA-IG-A4QS-01 8 65527677 65527677 T G CYP7B1 Missense_Mutation p.E321D 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-IG-A4QS-01 8 68972921 68972921 G C PREX2 Missense_Mutation p.V416L 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-IG-A4QS-01 8 77690559 77690559 A C ZFHX4 Missense_Mutation p.K1070T 0.17 possibly_damaging(0.607) TCGA-IG-A4QS-01 8 77777055 77777055 C T ZFHX4 3'UTR 0.08 TCGA-IG-A4QS-01 8 87641258 87641258 C T CNGB3 Missense_Mutation p.A457T 0.12 tolerated(0.28) benign(0.009) TCGA-IG-A4QS-01 8 88365898 88365898 T G CNBD1 Missense_Mutation p.L396R 0.13 deleterious(0) probably_damaging(0.999) TCGA-IG-A4QS-01 8 88886210 88886210 G - DCAF4L2 5'UTR 0.08 TCGA-IG-A4QS-01 8 90937464 90937464 G T OSGIN2 Missense_Mutation p.A452S 0.46 tolerated(0.15) benign(0.026) TCGA-IG-A4QS-01 9 120475582 120475582 T C TLR4 Silent p.S392S 0.50 TCGA-IG-A4QS-01 9 121929255 121929255 T A BRINP1 3'UTR 0.82 TCGA-IG-A4QS-01 9 121929274 121929274 T A BRINP1 3'UTR 0.79 TCGA-IG-A4QS-01 9 134358095 134358095 A C PRRC2B Splice_Site p.X1726_splice 0.37 TCGA-IG-A4QS-01 9 139616243 139616244 TG - FAM69B Intron 0.51 TCGA-IG-A4QS-01 9 43625621 43625621 T G SPATA31A6 Missense_Mutation p.Q1022H 0.19 deleterious(0.02) possibly_damaging(0.601) TCGA-IG-A4QS-01 9 82321669 82321669 C A TLE4 Missense_Mutation p.S264Y 0.39 deleterious(0.01) possibly_damaging(0.498) TCGA-IG-A4QS-01 9 85858031 85858031 T C FRMD3 3'Flank 0.33 TCGA-IG-A4QS-01 X 101138901 101138901 T G ZMAT1 Missense_Mutation p.S500R 0.44 deleterious(0) probably_damaging(0.987) TCGA-IG-A4QS-01 X 101138908 101138908 T A ZMAT1 Silent p.V497V 0.47 TCGA-IG-A4QS-01 X 101971323 101971323 G A GPRASP2 Missense_Mutation p.R509Q 0.33 deleterious(0.02) benign(0.034) TCGA-IG-A4QS-01 X 105156740 105156740 A C NRK Missense_Mutation p.K782T 0.43 tolerated(0.07) benign(0) TCGA-IG-A4QS-01 X 115303887 115303887 A C AGTR2 Missense_Mutation p.K118N 0.32 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 X 117033237 117033237 T C KLHL13 Silent p.G537G 0.44 TCGA-IG-A4QS-01 X 117819988 117819988 A C DOCK11 3'UTR 0.34 TCGA-IG-A4QS-01 X 118221265 118221265 C G KIAA1210 Missense_Mutation p.V1310L 0.35 tolerated(0.09) benign(0.099) TCGA-IG-A4QS-01 X 123519781 123519781 C T TENM1 Missense_Mutation p.R1941Q 0.31 deleterious(0) probably_damaging(0.924) TCGA-IG-A4QS-01 X 134126044 134126044 T C SMIM10 3'UTR 0.22 TCGA-IG-A4QS-01 X 144337250 144337250 G A SPANXN1 Silent p.T45T 0.64 TCGA-IG-A4QS-01 X 151284158 151284158 T G RP11-1007I13.4 RNA 0.29 TCGA-IG-A4QS-01 X 151900433 151900433 T G MAGEA12 Missense_Mutation p.K123T 0.30 deleterious(0) probably_damaging(1) TCGA-IG-A4QS-01 X 32381009 32381009 A C DMD Missense_Mutation p.L1741V 0.29 possibly_damaging(0.567) TCGA-IG-A4QS-01 X 68751567 68751567 A G FAM155B 3'UTR 0.28 TCGA-IG-A4QS-01 X 69256108 69256108 A C EDA 3'UTR 0.47 TCGA-IG-A4QS-01 X 77913151 77913151 A C ZCCHC5 Missense_Mutation p.V256G 0.49 tolerated(0.07) possibly_damaging(0.49) TCGA-IG-A4QS-01 X 9900467 9900467 G T SHROOM2 Silent p.S1048S 0.21 TCGA-IG-A4QT-01 19 19656499 19656499 C T CILP2 Silent p.L1049L 0.06 TCGA-IG-A4QT-01 19 36249058 36249058 C T C19orf55 5'UTR 0.14 TCGA-IG-A4QT-01 19 4453480 4453480 C T UBXN6 Missense_Mutation p.S96N 0.18 tolerated(0.5) benign(0.001) TCGA-IG-A4QT-01 1 65693038 65693038 C T AK4 3'UTR 0.06 TCGA-IG-A4QT-01 22 23733627 23733627 G A ZDHHC8P1 RNA 0.15 TCGA-IG-A4QT-01 7 103202030 103202030 C T RELN Silent p.G1826G 0.12 TCGA-IG-A4QT-01 8 22545648 22545648 T A EGR3 3'UTR 0.07 TCGA-IG-A50L-01 10 85962761 85962761 C A CDHR1 Missense_Mutation p.A222D 0.08 tolerated(0.66) benign(0.009) TCGA-IG-A50L-01 10 99433595 99433595 G T PI4K2A 3'UTR 0.75 TCGA-IG-A50L-01 11 104901182 104901182 T C CASP1 Missense_Mutation p.I168V 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-IG-A50L-01 11 1093845 1093845 G A MUC2 Silent p.T1888T 0.41 TCGA-IG-A50L-01 11 117079693 117079693 T A PCSK7 Silent p.P537P 0.13 TCGA-IG-A50L-01 11 117691332 117691332 C A FXYD2 Intron 0.13 TCGA-IG-A50L-01 11 33620438 33620438 C G KIAA1549L Silent p.P1311P 0.20 TCGA-IG-A50L-01 11 47837042 47837042 G A NUP160 Silent p.L559L 0.23 TCGA-IG-A50L-01 11 56043679 56043679 G C OR5T1 Missense_Mutation p.V189L 0.19 deleterious(0.02) benign(0.292) TCGA-IG-A50L-01 11 56258778 56258778 T A OR5M8 Missense_Mutation p.Q23H 0.21 deleterious(0.01) benign(0.114) TCGA-IG-A50L-01 11 60559760 60559760 C T MS4A10 Missense_Mutation p.A109V 0.14 tolerated(0.44) benign(0.029) TCGA-IG-A50L-01 11 63885526 63885526 A C FLRT1 Missense_Mutation p.K596T 0.14 tolerated(0.08) benign(0.061) TCGA-IG-A50L-01 11 64081712 64081713 - GTGC ESRRA Frame_Shift_Ins p.L151Afs*56 0.31 TCGA-IG-A50L-01 11 65154535 65154535 C A FRMD8 Missense_Mutation p.Q10K 0.14 tolerated(0.67) benign(0.081) TCGA-IG-A50L-01 11 7064621 7064621 C G NLRP14 Missense_Mutation p.S455C 0.15 tolerated(0.14) benign(0.004) TCGA-IG-A50L-01 11 89223663 89223663 T C NOX4 Missense_Mutation p.Q39R 0.40 tolerated(0.48) benign(0) TCGA-IG-A50L-01 11 92590461 92590461 G A FAT3 Missense_Mutation p.S3816N 0.21 benign(0.005) TCGA-IG-A50L-01 11 96104185 96104185 G A CCDC82 Nonsense_Mutation p.Q401* 0.09 TCGA-IG-A50L-01 12 100897237 100897238 - T NR1H4 Frame_Shift_Ins p.M27Hfs*62 0.16 TCGA-IG-A50L-01 12 118627816 118627816 C A TAOK3 Intron 0.10 TCGA-IG-A50L-01 12 12794940 12794940 A G CREBL2 3'UTR 0.25 TCGA-IG-A50L-01 12 3390480 3390480 G A TSPAN9 Silent p.T183T 0.28 TCGA-IG-A50L-01 12 67705481 67705481 A G CAND1 Silent p.T1123T 0.16 TCGA-IG-A50L-01 12 6775955 6775955 C T ZNF384 3'UTR 0.10 TCGA-IG-A50L-01 13 112725839 112725839 C T SOX1 3'UTR 0.45 TCGA-IG-A50L-01 13 21189967 21189967 C A IFT88 Missense_Mutation p.A392E 0.29 deleterious(0) probably_damaging(0.989) TCGA-IG-A50L-01 14 20216269 20216269 C T OR4Q3 Missense_Mutation p.T228I 0.21 tolerated(0.15) possibly_damaging(0.816) TCGA-IG-A50L-01 14 20403917 20403917 T C OR4K1 Missense_Mutation p.F31S 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-IG-A50L-01 14 26915623 26915623 G - NOVA1 3'UTR 0.15 TCGA-IG-A50L-01 14 32623846 32623846 A G ARHGAP5 Missense_Mutation p.I1401V 0.16 tolerated(0.85) benign(0) TCGA-IG-A50L-01 14 50895961 50895961 A - MAP4K5 Frame_Shift_Del p.S728Pfs*4 0.17 TCGA-IG-A50L-01 14 64991355 64991355 C G ZBTB1 3'UTR 0.30 TCGA-IG-A50L-01 14 88431853 88431853 T C GALC Silent p.V343V 0.10 TCGA-IG-A50L-01 15 22473170 22473170 G A IGHV4OR15-8 Missense_Mutation p.S34L 0.07 deleterious(0.04) benign(0.143) TCGA-IG-A50L-01 15 22742849 22742849 C A GOLGA6L1 Missense_Mutation p.Q412K 0.56 unknown(0) TCGA-IG-A50L-01 15 64967549 64967549 A T ZNF609 Silent p.G832G 0.47 TCGA-IG-A50L-01 16 139733 139733 G A NPRL3 Silent p.N443N 0.13 TCGA-IG-A50L-01 16 18795982 18795983 - A RPS15A Intron 0.53 TCGA-IG-A50L-01 16 19718330 19718330 T A KNOP1 Nonsense_Mutation p.K427* 0.29 TCGA-IG-A50L-01 16 2044035 2044035 C T SYNGR3 3'UTR 0.15 TCGA-IG-A50L-01 16 51169890 51169890 G C SALL1 3'UTR 0.09 TCGA-IG-A50L-01 16 67688336 67688336 G A RLTPR Missense_Mutation p.R1108H 0.14 deleterious(0) probably_damaging(0.996) TCGA-IG-A50L-01 16 76523630 76523630 G T CNTNAP4 Missense_Mutation p.V571F 0.33 deleterious(0.01) benign(0.167) TCGA-IG-A50L-01 16 9211276 9211276 A T C16orf72 3'UTR 0.19 TCGA-IG-A50L-01 17 10431151 10431151 A G MYH2 Missense_Mutation p.L1262P 0.28 deleterious(0) benign(0.278) TCGA-IG-A50L-01 17 17696252 17696252 C G RAI1 5'UTR 0.67 TCGA-IG-A50L-01 17 39670288 39670288 T C KRT15 Missense_Mutation p.K453R 0.21 tolerated(0.28) benign(0.437) TCGA-IG-A50L-01 17 4080500 4080500 G T ANKFY1 Nonsense_Mutation p.S941* 0.20 TCGA-IG-A50L-01 17 49072830 49072830 A T SPAG9 Missense_Mutation p.L678Q 0.31 deleterious(0) probably_damaging(0.996) TCGA-IG-A50L-01 17 56329698 56329698 C T LPO Silent p.S312S 0.21 TCGA-IG-A50L-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.51 deleterious(0) probably_damaging(0.983) TCGA-IG-A50L-01 18 12859247 12859247 G T PTPN2 Silent p.R26R 0.20 TCGA-IG-A50L-01 19 10461607 10461607 G A TYK2 Missense_Mutation p.A1156V 0.24 deleterious(0.01) possibly_damaging(0.863) TCGA-IG-A50L-01 19 11492471 11492471 T A EPOR Missense_Mutation p.H161L 0.67 tolerated(0.1) benign(0.268) TCGA-IG-A50L-01 19 13041426 13041427 - A FARSA Frame_Shift_Ins p.M95Ifs*27 0.10 TCGA-IG-A50L-01 19 17534317 17534317 G A MVB12A Missense_Mutation p.G142S 0.19 tolerated(0.23) probably_damaging(1) TCGA-IG-A50L-01 19 20228869 20228870 - A ZNF90 Frame_Shift_Ins p.P172Tfs*21 0.17 TCGA-IG-A50L-01 19 22363052 22363052 G T ZNF676 Missense_Mutation p.F489L 0.34 tolerated(0.41) benign(0.01) TCGA-IG-A50L-01 19 31770292 31770292 A G TSHZ3 Missense_Mutation p.L136P 0.06 deleterious(0) benign(0.401) TCGA-IG-A50L-01 19 35978335 35978335 G T KRTDAP Missense_Mutation p.Q99K 0.37 tolerated_low_confidence(0.06) probably_damaging(0.968) TCGA-IG-A50L-01 19 5214590 5214590 C T PTPRS Silent p.R1492R 0.15 TCGA-IG-A50L-01 19 52619109 52619109 A G ZNF616 Silent p.T436T 0.16 TCGA-IG-A50L-01 19 52887840 52887840 G A ZNF880 Missense_Mutation p.G336D 0.30 tolerated(0.5) benign(0.001) TCGA-IG-A50L-01 19 54139880 54139880 A G DPRX Missense_Mutation p.K72E 0.14 deleterious(0.01) probably_damaging(0.991) TCGA-IG-A50L-01 19 55817695 55817695 G A BRSK1 Missense_Mutation p.V656I 0.13 deleterious(0.03) possibly_damaging(0.874) TCGA-IG-A50L-01 19 9084850 9084850 G A MUC16 Missense_Mutation p.A2322V 0.14 unknown(0) TCGA-IG-A50L-01 19 9090486 9090486 A T MUC16 Silent p.S443S 0.20 TCGA-IG-A50L-01 1 1326172 1326172 T A CCNL2 Missense_Mutation p.I245F 0.48 deleterious(0) probably_damaging(0.999) TCGA-IG-A50L-01 1 158735878 158735878 C A OR6N1 Missense_Mutation p.D199Y 0.20 deleterious(0.03) probably_damaging(0.997) TCGA-IG-A50L-01 1 160302324 160302324 T C COPA Missense_Mutation p.Y137C 0.11 deleterious(0) probably_damaging(0.999) TCGA-IG-A50L-01 1 160340918 160340918 G A NHLH1 Missense_Mutation p.V133I 0.08 deleterious_low_confidence(0.04) benign(0.007) TCGA-IG-A50L-01 1 167096073 167096073 G T DUSP27 Nonsense_Mutation p.E569* 0.39 TCGA-IG-A50L-01 1 197297560 197297560 T C CRB1 Missense_Mutation p.C27R 0.53 deleterious(0.01) possibly_damaging(0.714) TCGA-IG-A50L-01 1 206858691 206858691 C G MAPKAPK2 Silent p.P39P 0.36 TCGA-IG-A50L-01 1 222826634 222826634 A G MIA3 Missense_Mutation p.N1425S 0.07 tolerated(0.3) benign(0.007) TCGA-IG-A50L-01 1 228487173 228487173 A G OBSCN Missense_Mutation p.Y4475C 0.17 probably_damaging(1) TCGA-IG-A50L-01 1 231700352 231700352 G A TSNAX Missense_Mutation p.A192T 0.05 deleterious(0) probably_damaging(0.953) TCGA-IG-A50L-01 1 248343907 248343907 T C OR2M2 Missense_Mutation p.L207P 0.05 deleterious(0) probably_damaging(0.988) TCGA-IG-A50L-01 1 32846840 32846840 T C BSDC1 Silent p.P146P 0.16 TCGA-IG-A50L-01 1 35857881 35857881 A G ZMYM4 Missense_Mutation p.I886V 0.17 tolerated(0.05) probably_damaging(0.995) TCGA-IG-A50L-01 1 82456953 82456954 - A LPHN2 3'UTR 0.35 TCGA-IG-A50L-01 1 84639015 84639015 G A PRKACB Intron 0.30 TCGA-IG-A50L-01 20 16488617 16488617 T C KIF16B Missense_Mutation p.I229V 0.21 deleterious(0.01) benign(0.108) TCGA-IG-A50L-01 20 17208123 17208123 G A PCSK2 Missense_Mutation p.R58Q 0.16 tolerated(0.3) benign(0.408) TCGA-IG-A50L-01 20 42157355 42157355 C A L3MBTL1 Silent p.A285A 0.09 TCGA-IG-A50L-01 20 44598230 44598230 C G ZNF335 Missense_Mutation p.G101A 0.14 tolerated(0.15) benign(0.003) TCGA-IG-A50L-01 21 15323581 15323581 C T ANKRD20A11P Intron 0.14 TCGA-IG-A50L-01 21 34924731 34924731 C A SON Missense_Mutation p.S1065Y 0.19 possibly_damaging(0.608) TCGA-IG-A50L-01 21 39817494 39817494 G A ERG Silent p.Y30Y 0.18 TCGA-IG-A50L-01 22 39918415 39918415 C G ATF4 Missense_Mutation p.N288K 0.17 deleterious(0) possibly_damaging(0.883) TCGA-IG-A50L-01 22 50688799 50688799 C T HDAC10 Intron 0.10 TCGA-IG-A50L-01 2 166245183 166245183 A T SCN2A Missense_Mutation p.T1623S 0.19 tolerated(0.06) benign(0.247) TCGA-IG-A50L-01 2 178098809 178098809 T C NFE2L2 Missense_Mutation p.E79G 0.38 deleterious(0) probably_damaging(1) TCGA-IG-A50L-01 2 179433512 179433512 G A TTN Missense_Mutation p.R25783W 0.48 TCGA-IG-A50L-01 2 209345854 209345854 C T PTH2R Silent p.T347T 0.21 TCGA-IG-A50L-01 2 226516200 226516200 T A NYAP2 Silent p.P627P 0.15 TCGA-IG-A50L-01 2 241724476 241724476 G A KIF1A Missense_Mutation p.S217F 0.47 deleterious(0) probably_damaging(1) TCGA-IG-A50L-01 2 61361295 61361295 C A KIAA1841 Missense_Mutation p.D684E 0.21 tolerated_low_confidence(0.36) unknown(0) TCGA-IG-A50L-01 3 10016090 10016091 - A EMC3 Frame_Shift_Ins p.M130Ifs*20 0.32 TCGA-IG-A50L-01 3 109050582 109050582 T C DPPA4 Missense_Mutation p.K130R 0.15 tolerated(0.09) benign(0.374) TCGA-IG-A50L-01 3 121712109 121712109 C T ILDR1 Missense_Mutation p.R496H 0.25 tolerated(0.06) benign(0.001) TCGA-IG-A50L-01 3 192515061 192515061 C A MB21D2 3'UTR 0.15 TCGA-IG-A50L-01 3 194995529 194995529 C G ACAP2 3'UTR 0.10 TCGA-IG-A50L-01 3 28364113 28364113 A G CMC1 3'UTR 0.40 TCGA-IG-A50L-01 3 39184426 39184426 G T CSRNP1 3'UTR 0.50 TCGA-IG-A50L-01 3 46721933 46721933 G A ALS2CL Missense_Mutation p.A512V 0.11 tolerated(0.38) benign(0.292) TCGA-IG-A50L-01 3 85008594 85008594 G A CADM2 5'UTR 0.27 TCGA-IG-A50L-01 3 85008595 85008595 C A CADM2 5'UTR 0.27 TCGA-IG-A50L-01 3 9426231 9426231 A T THUMPD3 Silent p.V461V 0.17 TCGA-IG-A50L-01 4 109780831 109780831 T G COL25A1 Missense_Mutation p.N434T 0.14 deleterious(0) possibly_damaging(0.833) TCGA-IG-A50L-01 4 13616992 13616992 C T BOD1L1 Missense_Mutation p.G168E 0.15 benign(0.001) TCGA-IG-A50L-01 4 177041086 177041086 C T WDR17 Missense_Mutation p.P150S 0.22 tolerated(0.1) probably_damaging(0.999) TCGA-IG-A50L-01 4 436616 436616 T G ZNF721 Missense_Mutation p.H547P 0.25 deleterious(0) probably_damaging(1) TCGA-IG-A50L-01 4 80328426 80328426 C G GK2 Missense_Mutation p.R310T 0.18 tolerated(0.19) benign(0.297) TCGA-IG-A50L-01 5 10258535 10258535 C A CCT5 Missense_Mutation p.P254Q 0.22 deleterious(0) probably_damaging(0.992) TCGA-IG-A50L-01 5 134063408 134063408 T A SEC24A 3'UTR 0.21 TCGA-IG-A50L-01 5 140214386 140214386 C G PCDHA7 Missense_Mutation p.L140V 0.17 tolerated_low_confidence(0.15) benign(0.111) TCGA-IG-A50L-01 5 150410284 150410284 C G TNIP1 Missense_Mutation p.G634A 0.20 tolerated_low_confidence(0.61) benign(0.196) TCGA-IG-A50L-01 5 176047523 176047523 C T SNCB 3'UTR 0.14 TCGA-IG-A50L-01 5 177569912 177569912 G C RMND5B Missense_Mutation p.Q115H 0.13 tolerated(0.06) benign(0.001) TCGA-IG-A50L-01 5 178199531 178199531 C T AACSP1 RNA 0.12 TCGA-IG-A50L-01 5 23526968 23526968 T C PRDM9 Missense_Mutation p.W591R 0.24 tolerated(0.61) benign(0.003) TCGA-IG-A50L-01 5 24487994 24487994 A G CDH10 Silent p.N715N 0.35 TCGA-IG-A50L-01 6 117709183 117709183 T C ROS1 Missense_Mutation p.S592G 0.37 tolerated_low_confidence(0.25) benign(0) TCGA-IG-A50L-01 6 127771344 127771344 G T KIAA0408 Missense_Mutation p.H97N 0.32 tolerated(0.07) benign(0.009) TCGA-IG-A50L-01 6 128642852 128642852 A T PTPRK Intron 0.27 TCGA-IG-A50L-01 6 132649624 132649624 T C MOXD1 Missense_Mutation p.Y258C 0.15 deleterious(0) probably_damaging(1) TCGA-IG-A50L-01 6 160481680 160481680 C T IGF2R Nonsense_Mutation p.R1065* 0.13 TCGA-IG-A50L-01 6 2892151 2892151 G C SERPINB9 Silent p.R213R 0.20 TCGA-IG-A50L-01 6 33255939 33255939 C T WDR46 Missense_Mutation p.A183T 0.29 tolerated(0.96) benign(0.424) TCGA-IG-A50L-01 6 34985823 34985823 C T ANKS1A Missense_Mutation p.S666L 0.50 deleterious(0.03) possibly_damaging(0.716) TCGA-IG-A50L-01 6 55988863 55988863 G T COL21A1 Missense_Mutation p.F585L 0.25 tolerated(0.67) benign(0.004) TCGA-IG-A50L-01 6 63990251 63990251 C G LGSN Missense_Mutation p.G402A 0.16 deleterious(0.01) possibly_damaging(0.656) TCGA-IG-A50L-01 6 82921212 82921212 C T IBTK Missense_Mutation p.R790K 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-IG-A50L-01 7 100657300 100657300 C T MUC12 Missense_Mutation p.L5249F 0.29 possibly_damaging(0.773) TCGA-IG-A50L-01 7 107217834 107217834 C G DUS4L Missense_Mutation p.I261M 0.09 deleterious(0) possibly_damaging(0.781) TCGA-IG-A50L-01 7 12644288 12644288 G A SCIN Silent p.K222K 0.09 TCGA-IG-A50L-01 7 131175644 131175644 C G MKLN1 3'UTR 0.20 TCGA-IG-A50L-01 7 142622702 142622702 G A TRPV5 Silent p.V348V 0.11 TCGA-IG-A50L-01 7 14661089 14661089 T C DGKB Missense_Mutation p.S401G 0.13 tolerated(0.2) benign(0) TCGA-IG-A50L-01 7 150707823 150707823 G T NOS3 Missense_Mutation p.V942F 0.35 deleterious(0) possibly_damaging(0.847) TCGA-IG-A50L-01 7 21941742 21941742 A G CDCA7L 3'UTR 0.22 TCGA-IG-A50L-01 7 2740059 2740059 G A AMZ1 5'UTR 0.53 TCGA-IG-A50L-01 7 769417 769417 G C HEATR2 Missense_Mutation p.G238A 0.11 deleterious(0.01) probably_damaging(0.986) TCGA-IG-A50L-01 7 88965830 88965830 T C ZNF804B Silent p.L1178L 0.09 TCGA-IG-A50L-01 8 101145905 101145905 A G FBXO43 3'UTR 0.32 TCGA-IG-A50L-01 8 23560288 23560288 C A NKX2-6 Missense_Mutation p.K194N 0.17 deleterious(0) possibly_damaging(0.522) TCGA-IG-A50L-01 8 49644005 49644005 A G EFCAB1 Missense_Mutation p.V39A 0.23 tolerated(1) benign(0) TCGA-IG-A50L-01 8 67547064 67547064 G A VCPIP1 Missense_Mutation p.S1114F 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-IG-A50L-01 8 91095045 91095045 G C CALB1 5'UTR 0.16 TCGA-IG-A50L-01 9 104238534 104238534 T C TMEM246 Missense_Mutation p.M281V 0.29 tolerated(0.51) benign(0) TCGA-IG-A50L-01 9 139411817 139411817 C T NOTCH1 Missense_Mutation p.E488K 0.28 deleterious(0.01) possibly_damaging(0.812) TCGA-IG-A50L-01 9 40774731 40774731 C T ZNF658 Missense_Mutation p.A182T 0.08 tolerated(1) benign(0) TCGA-IG-A50L-01 9 72915086 72915086 A G SMC5 Silent p.K478K 0.53 TCGA-IG-A50L-01 9 90388070 90388070 G A CTSL3P RNA 0.11 TCGA-IG-A50L-01 X 135313964 135313964 T C MAP7D3 Silent p.A384A 0.29 TCGA-IG-A50L-01 X 153044743 153044743 G A PLXNB3 3'UTR 0.38 TCGA-IG-A50L-01 X 153130787 153130787 C T L1CAM Missense_Mutation p.A906T 0.47 tolerated(0.42) benign(0.39) TCGA-IG-A50L-01 X 154158117 154158117 T C F8 Missense_Mutation p.I1316M 0.10 tolerated(1) benign(0.001) TCGA-IG-A50L-01 X 55651695 55651695 C A FOXR2 3'UTR 0.31 TCGA-IG-A50L-01 X 57619961 57619961 T C ZXDB Missense_Mutation p.S494P 0.26 deleterious(0) probably_damaging(0.991) TCGA-IG-A50L-01 X 63444300 63444300 G T ASB12 Missense_Mutation p.A291D 0.54 tolerated(0.2) probably_damaging(0.951) TCGA-IG-A50L-01 X 73963734 73963734 T C KIAA2022 Missense_Mutation p.T220A 0.38 tolerated(1) benign(0.001) TCGA-IG-A51D-01 10 128193492 128193492 C T C10orf90 Missense_Mutation p.G93R 0.13 tolerated(0.16) benign(0.007) TCGA-IG-A51D-01 10 3212331 3212331 G C PITRM1 Missense_Mutation p.L42V 0.10 tolerated(0.6) benign(0.001) TCGA-IG-A51D-01 10 77158178 77158179 AT - ZNF503 3'UTR 0.43 TCGA-IG-A51D-01 10 87379698 87379698 G A GRID1 Silent p.G762G 0.16 TCGA-IG-A51D-01 11 110104066 110104066 C G RDX Missense_Mutation p.E495Q 0.17 tolerated(0.15) benign(0.168) TCGA-IG-A51D-01 11 134179627 134179627 G A GLB1L3 Missense_Mutation p.G357R 0.23 tolerated(0.23) possibly_damaging(0.625) TCGA-IG-A51D-01 11 28080629 28080629 C T KIF18A Missense_Mutation p.E598K 0.21 deleterious(0.04) benign(0.427) TCGA-IG-A51D-01 11 406002 406002 G A SIGIRR Missense_Mutation p.S376L 0.19 deleterious(0.04) benign(0.006) TCGA-IG-A51D-01 11 47372796 47372796 C T MYBPC3 Missense_Mutation p.E96K 0.19 deleterious_low_confidence(0.02) benign(0.22) TCGA-IG-A51D-01 11 55681251 55681251 G T OR5W2 Missense_Mutation p.Q270K 0.29 tolerated(0.07) benign(0.144) TCGA-IG-A51D-01 11 56020238 56020250 TACATATAGTGGC - OR5T3 Frame_Shift_Del p.I190Lfs*45 0.14 TCGA-IG-A51D-01 11 62751107 62751107 G T SLC22A6 Missense_Mutation p.T177N 0.19 deleterious(0) probably_damaging(0.925) TCGA-IG-A51D-01 11 65272188 65272189 TA - MALAT1 RNA 0.11 TCGA-IG-A51D-01 11 66114251 66114251 C T B3GNT1 Missense_Mutation p.V256M 0.18 deleterious(0) probably_damaging(0.999) TCGA-IG-A51D-01 11 67023301 67023301 C T KDM2A 3'UTR 0.14 TCGA-IG-A51D-01 11 6943135 6943135 G C OR2D3 Missense_Mutation p.L301F 0.13 deleterious(0.02) benign(0.295) TCGA-IG-A51D-01 11 70333138 70333138 C T SHANK2 Missense_Mutation p.R1088H 0.04 deleterious(0) benign(0.254) TCGA-IG-A51D-01 11 74638501 74638501 G C XRRA1 Missense_Mutation p.L145V 0.24 deleterious(0) probably_damaging(0.997) TCGA-IG-A51D-01 12 101683933 101683933 C A UTP20 Missense_Mutation p.L206I 0.19 deleterious(0.04) benign(0.323) TCGA-IG-A51D-01 12 105459083 105459083 C G ALDH1L2 Missense_Mutation p.D250H 0.17 deleterious_low_confidence(0) probably_damaging(1) TCGA-IG-A51D-01 12 112464841 112464841 C T NAA25 3'UTR 0.35 TCGA-IG-A51D-01 12 112654172 112654172 G A HECTD4 Silent p.N2317N 0.20 TCGA-IG-A51D-01 12 114400104 114400104 G A RBM19 Missense_Mutation p.S51F 0.22 deleterious(0) probably_damaging(0.926) TCGA-IG-A51D-01 12 121691134 121691134 G A CAMKK2 Missense_Mutation p.T350M 0.16 deleterious(0) probably_damaging(0.999) TCGA-IG-A51D-01 12 122252029 122252029 C T SETD1B Silent p.G636G 0.19 TCGA-IG-A51D-01 12 124315090 124315090 C T DNAH10 Intron 0.11 TCGA-IG-A51D-01 12 133351871 133351871 C G GOLGA3 Missense_Mutation p.E1333D 0.13 tolerated(0.13) benign(0.071) TCGA-IG-A51D-01 12 49666495 49666495 G A TUBA1C Missense_Mutation p.E279K 0.22 deleterious_low_confidence(0) possibly_damaging(0.579) TCGA-IG-A51D-01 12 54967206 54967206 C T PDE1B Nonsense_Mutation p.R302* 0.34 TCGA-IG-A51D-01 12 56739972 56739972 C T STAT2 Missense_Mutation p.R687Q 0.09 tolerated(0.86) benign(0.003) TCGA-IG-A51D-01 12 78225248 78225248 G C NAV3 Missense_Mutation p.V3L 0.16 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-IG-A51D-01 12 9094338 9094338 G C M6PR 3'UTR 0.15 TCGA-IG-A51D-01 12 9354962 9354962 A G PZP Missense_Mutation p.F145L 0.17 deleterious(0.02) possibly_damaging(0.867) TCGA-IG-A51D-01 13 33017928 33017928 G A N4BP2L2 Missense_Mutation p.P249L 0.27 tolerated(0.12) benign(0.039) TCGA-IG-A51D-01 13 36049877 36049877 C T MAB21L1 Silent p.Q133Q 0.15 TCGA-IG-A51D-01 13 58208621 58208621 G A PCDH17 Silent p.T647T 0.30 TCGA-IG-A51D-01 13 70514337 70514337 C T KLHL1 Silent p.E283E 0.36 TCGA-IG-A51D-01 14 105355974 105355974 G A CEP170B Missense_Mutation p.A1253T 0.18 tolerated(0.18) benign(0.06) TCGA-IG-A51D-01 14 22309930 22309930 C T TRAV12-1 Missense_Mutation p.S104L 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-IG-A51D-01 15 23890125 23890125 C A MAGEL2 Missense_Mutation p.W319L 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-IG-A51D-01 15 25324260 25324260 G A SNORD116-13 RNA 0.11 TCGA-IG-A51D-01 15 25486890 25486890 G C SNORD115-40 5'Flank 0.13 TCGA-IG-A51D-01 15 28361836 28361836 C A HERC2 Silent p.V4528V 0.17 TCGA-IG-A51D-01 15 31266646 31266646 C T MTMR10 Silent p.K115K 0.23 TCGA-IG-A51D-01 15 40913867 40913867 A C CASC5 Missense_Mutation p.M495L 0.14 tolerated(0.15) benign(0.011) TCGA-IG-A51D-01 15 42116141 42116141 G T MAPKBP1 Missense_Mutation p.Q1371H 0.45 tolerated(0.37) benign(0.003) TCGA-IG-A51D-01 15 64424089 64424089 C A SNX1 Missense_Mutation p.R407S 0.52 deleterious(0) possibly_damaging(0.822) TCGA-IG-A51D-01 15 72105936 72105936 G A CTD-2524L6.3 5'Flank 0.24 TCGA-IG-A51D-01 15 74468116 74468116 C A ISLR Missense_Mutation p.A306D 0.12 deleterious(0) probably_damaging(0.999) TCGA-IG-A51D-01 15 78580699 78580699 C G WDR61 Missense_Mutation p.L196F 0.09 deleterious(0) probably_damaging(0.989) TCGA-IG-A51D-01 15 79220095 79220095 T C CTSH Missense_Mutation p.K220R 0.12 tolerated(0.17) benign(0.02) TCGA-IG-A51D-01 16 21726332 21726332 G A OTOA Silent p.Q449Q 0.09 TCGA-IG-A51D-01 16 4938211 4938211 C T PPL Silent p.E802E 0.19 TCGA-IG-A51D-01 17 10227347 10227347 C T MYH13 Missense_Mutation p.E976K 0.17 deleterious(0) probably_damaging(0.98) TCGA-IG-A51D-01 17 18390984 18390984 C T LGALS9C Silent p.F119F 0.24 TCGA-IG-A51D-01 17 19470501 19470501 C T SLC47A1 Silent p.I423I 0.24 TCGA-IG-A51D-01 17 28712032 28712032 G A CPD Missense_Mutation p.G258S 0.12 deleterious(0.03) probably_damaging(1) TCGA-IG-A51D-01 17 29701376 29701376 C T NF1 3'UTR 0.10 TCGA-IG-A51D-01 17 39389161 39389161 G C KRTAP9-3 Missense_Mutation p.E136D 0.16 tolerated(0.23) benign(0.44) TCGA-IG-A51D-01 17 41031648 41031648 C T LINC00671 RNA 0.09 TCGA-IG-A51D-01 17 73975071 73975071 C T ACOX1 Silent p.E28E 0.22 TCGA-IG-A51D-01 17 7577567 7577568 AC - TP53 Frame_Shift_Del p.C238* 0.47 TCGA-IG-A51D-01 17 76109657 76109657 C T TMC6 Missense_Mutation p.E776K 0.25 tolerated(0.08) possibly_damaging(0.728) TCGA-IG-A51D-01 17 80011221 80011221 C T GPS1 Silent p.Y75Y 0.22 TCGA-IG-A51D-01 17 80015160 80015160 C T GPS1 3'UTR 0.10 TCGA-IG-A51D-01 17 80059488 80059488 G A FASN 5'Flank 0.36 TCGA-IG-A51D-01 17 9760754 9760754 C T GLP2R Missense_Mutation p.T209M 0.09 deleterious(0.02) probably_damaging(1) TCGA-IG-A51D-01 18 55021733 55021733 C T ST8SIA3 Missense_Mutation p.R94W 0.27 benign(0.399) TCGA-IG-A51D-01 19 19206999 19206999 G A SLC25A42 Silent p.S22S 0.17 TCGA-IG-A51D-01 19 40902249 40902249 C A PRX Missense_Mutation p.M670I 0.16 tolerated(0.39) benign(0.043) TCGA-IG-A51D-01 19 41594483 41594483 G T CYP2A13 Missense_Mutation p.G36V 0.19 deleterious(0) probably_damaging(1) TCGA-IG-A51D-01 19 41597723 41597723 C T CYP2A13 Silent p.F247F 0.14 TCGA-IG-A51D-01 19 41889782 41889782 C T TMEM91 3'UTR 0.11 TCGA-IG-A51D-01 19 42373777 42373777 A G RPS19 Missense_Mutation p.K122R 0.22 tolerated(1) benign(0.011) TCGA-IG-A51D-01 19 4664885 4664885 C T C19orf10 Intron 0.19 TCGA-IG-A51D-01 19 46995440 46995440 G A PNMAL2 3'UTR 0.24 TCGA-IG-A51D-01 19 472424 472424 C T ODF3L2 Missense_Mutation p.A69T 0.14 deleterious(0.02) probably_damaging(0.972) TCGA-IG-A51D-01 19 54216635 54216635 C T MIR519D RNA 0.13 TCGA-IG-A51D-01 19 54407957 54407957 C G PRKCG Silent p.P575P 0.09 TCGA-IG-A51D-01 19 55085970 55085970 C T LILRA2 Silent p.H91H 0.10 TCGA-IG-A51D-01 19 55264097 55264097 G A KIR2DL3 3'UTR 0.58 TCGA-IG-A51D-01 19 9005210 9005210 A C MUC16 Silent p.S13289S 0.16 TCGA-IG-A51D-01 1 150048327 150048327 C T VPS45 Silent p.I102I 0.13 TCGA-IG-A51D-01 1 153390558 153390558 G C S100A7A 5'UTR 0.20 TCGA-IG-A51D-01 1 17322751 17322751 G A ATP13A2 Missense_Mutation p.R451W 0.25 deleterious(0) possibly_damaging(0.846) TCGA-IG-A51D-01 1 176526316 176526316 G A PAPPA2 Silent p.A286A 0.10 TCGA-IG-A51D-01 1 180953825 180953825 G A STX6 Missense_Mutation p.H227Y 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-IG-A51D-01 1 223395313 223395313 T C SUSD4 3'UTR 0.29 TCGA-IG-A51D-01 1 229745865 229745865 T C TAF5L Missense_Mutation p.N79D 0.17 tolerated(0.55) benign(0.002) TCGA-IG-A51D-01 1 230468761 230468761 C T PGBD5 Missense_Mutation p.A299T 0.18 tolerated(0.47) benign(0.002) TCGA-IG-A51D-01 1 237794736 237794736 G C RYR2 Missense_Mutation p.M2150I 0.07 probably_damaging(0.987) TCGA-IG-A51D-01 1 237982455 237982455 C A RYR2 Missense_Mutation p.F4851L 0.15 possibly_damaging(0.787) TCGA-IG-A51D-01 1 32800284 32800284 C G MARCKSL1 Missense_Mutation p.E168Q 0.06 deleterious(0.01) unknown(0) TCGA-IG-A51D-01 1 33412087 33412087 A C RNF19B Missense_Mutation p.I355M 0.17 deleterious(0) probably_damaging(0.991) TCGA-IG-A51D-01 1 35570262 35570262 G A ZMYM1 Silent p.E233E 0.18 TCGA-IG-A51D-01 1 3699225 3699226 - T LRRC47 Frame_Shift_Ins p.V472Gfs*2 0.19 TCGA-IG-A51D-01 1 3755527 3755527 C A CEP104 Splice_Site p.X297_splice 0.22 TCGA-IG-A51D-01 1 42620500 42620500 C T GUCA2B Silent p.C80C 0.29 TCGA-IG-A51D-01 1 46733163 46733163 T A RAD54L Silent p.T308T 0.28 TCGA-IG-A51D-01 1 6196803 6196803 C A CHD5 Missense_Mutation p.K853N 0.16 deleterious(0) probably_damaging(1) TCGA-IG-A51D-01 1 67724329 67724329 G A IL23R Missense_Mutation p.D470N 0.12 tolerated(0.15) benign(0.047) TCGA-IG-A51D-01 1 94027359 94027359 G A BCAR3 3'UTR 0.15 TCGA-IG-A51D-01 20 33719587 33719587 C T EDEM2 Splice_Site p.X235_splice 0.10 TCGA-IG-A51D-01 20 35156429 35156429 G A DLGAP4 3'UTR 0.10 TCGA-IG-A51D-01 20 36640851 36640851 C G TTI1 Silent p.L456L 0.12 TCGA-IG-A51D-01 20 47248873 47248873 G T PREX1 Missense_Mutation p.Q1490K 0.16 deleterious(0.01) benign(0.097) TCGA-IG-A51D-01 20 62038650 62038650 C G KCNQ2 Missense_Mutation p.E656Q 0.18 tolerated(0.29) probably_damaging(0.987) TCGA-IG-A51D-01 21 33340686 33340686 C G HUNK Silent p.T333T 0.19 TCGA-IG-A51D-01 21 34926664 34926664 T C SON Silent p.P1709P 0.07 TCGA-IG-A51D-01 22 24743079 24743079 C G SPECC1L Nonsense_Mutation p.S893* 0.18 TCGA-IG-A51D-01 22 31656020 31656020 G C LIMK2 Missense_Mutation p.E149Q 0.18 tolerated(0.06) benign(0.414) TCGA-IG-A51D-01 22 40754947 40754947 C T ADSL Missense_Mutation p.R188C 0.39 deleterious(0.03) probably_damaging(0.982) TCGA-IG-A51D-01 22 41565522 41565539 TTACCTCGATAGTGTTCA - EP300 In_Frame_Del p.Y1397_H1402del 0.37 TCGA-IG-A51D-01 2 125175095 125175095 C T CNTNAP5 Missense_Mutation p.R153C 0.11 deleterious(0.01) probably_damaging(1) TCGA-IG-A51D-01 2 145271205 145271205 C T ZEB2 Intron 0.46 TCGA-IG-A51D-01 2 179399772 179399772 T C TTN Missense_Mutation p.Q33857R 0.24 TCGA-IG-A51D-01 2 179516013 179516013 C T TTN Silent p.K13194K 0.12 TCGA-IG-A51D-01 2 200213692 200213692 A T SATB2 Missense_Mutation p.L302H 0.13 deleterious(0) probably_damaging(0.984) TCGA-IG-A51D-01 2 234854530 234854530 G A TRPM8 Missense_Mutation p.D244N 0.16 tolerated(0.09) benign(0.276) TCGA-IG-A51D-01 2 242681932 242681932 G A D2HGDH Missense_Mutation p.E145K 0.21 deleterious(0) probably_damaging(0.998) TCGA-IG-A51D-01 2 27662714 27662714 G C NRBP1 Missense_Mutation p.E329Q 0.24 deleterious(0) probably_damaging(0.997) TCGA-IG-A51D-01 2 27905115 27905115 G A SLC4A1AP Silent p.K588K 0.15 TCGA-IG-A51D-01 2 44079810 44079810 C T ABCG8 Missense_Mutation p.S256F 0.23 deleterious(0.01) possibly_damaging(0.809) TCGA-IG-A51D-01 2 48906683 48906683 C T STON1-GTF2A1L 3'UTR 0.14 TCGA-IG-A51D-01 2 74717254 74717254 G A TTC31 Missense_Mutation p.D78N 0.13 tolerated_low_confidence(0.05) possibly_damaging(0.691) TCGA-IG-A51D-01 2 89084344 89084344 A C ANKRD36BP2 RNA 0.17 TCGA-IG-A51D-01 3 100948333 100948333 C G IMPG2 Missense_Mutation p.G1175A 0.13 tolerated(0.12) benign(0.001) TCGA-IG-A51D-01 3 107764115 107764115 T G CD47 3'Flank 0.26 TCGA-IG-A51D-01 3 121713102 121713102 T C ILDR1 Silent p.G235G 0.30 TCGA-IG-A51D-01 3 129290394 129290394 C G PLXND1 Missense_Mutation p.Q1098H 0.11 deleterious(0) probably_damaging(0.997) TCGA-IG-A51D-01 3 132242519 132242519 G A DNAJC13 Missense_Mutation p.E2008K 0.10 deleterious(0.02) benign(0.23) TCGA-IG-A51D-01 3 139077583 139077583 G C COPB2 Intron 0.14 TCGA-IG-A51D-01 3 1427311 1427311 A G CNTN6 Missense_Mutation p.D845G 0.10 tolerated(0.15) probably_damaging(0.923) TCGA-IG-A51D-01 3 145806375 145806375 T C PLOD2 Missense_Mutation p.K335E 0.19 tolerated(0.07) benign(0.023) TCGA-IG-A51D-01 3 148890255 148890255 A T HPS3 3'UTR 0.58 TCGA-IG-A51D-01 3 156254522 156254522 G C KCNAB1 Missense_Mutation p.D416H 0.09 deleterious(0.02) benign(0.104) TCGA-IG-A51D-01 3 158428682 158428682 G C RARRES1 Missense_Mutation p.S127C 0.26 deleterious(0.04) probably_damaging(0.971) TCGA-IG-A51D-01 3 169710777 169710777 G C SEC62 Missense_Mutation p.D376H 0.10 deleterious_low_confidence(0.01) unknown(0) TCGA-IG-A51D-01 3 179519395 179519397 TTC - PEX5L 3'UTR 0.17 TCGA-IG-A51D-01 3 183495464 183495464 A G YEATS2 Silent p.G904G 0.11 TCGA-IG-A51D-01 3 49051540 49051540 C G WDR6 Missense_Mutation p.P888R 0.20 deleterious(0) probably_damaging(0.999) TCGA-IG-A51D-01 3 49693542 49693542 G C BSN Missense_Mutation p.A2185P 0.21 unknown(0) TCGA-IG-A51D-01 3 67059335 67059335 T A KBTBD8 3'UTR 0.21 TCGA-IG-A51D-01 3 73111574 73111574 A G EBLN2 Silent p.A114A 0.27 TCGA-IG-A51D-01 4 1231526 1231526 G A CTBP1 Intron 0.03 TCGA-IG-A51D-01 4 126373683 126373683 G A FAT4 Missense_Mutation p.V3838M 0.08 benign(0.056) TCGA-IG-A51D-01 4 159605747 159605747 C T ETFDH Missense_Mutation p.P137S 0.18 deleterious(0.01) probably_damaging(1) TCGA-IG-A51D-01 4 159789786 159789786 C A FNIP2 Silent p.P666P 0.23 TCGA-IG-A51D-01 4 44691414 44691414 G A GUF1 Missense_Mutation p.G397D 0.08 deleterious(0) probably_damaging(1) TCGA-IG-A51D-01 4 53610318 53610324 TTAGACT - ERVMER34-1 Frame_Shift_Del p.K455Ifs*12 0.13 TCGA-IG-A51D-01 4 71555258 71555258 G C UTP3 Missense_Mutation p.R288S 0.30 deleterious(0) benign(0.043) TCGA-IG-A51D-01 4 77949786 77949786 C T SEPT11 Nonsense_Mutation p.Q320* 0.20 TCGA-IG-A51D-01 5 112350933 112350933 C T DCP2 3'UTR 0.12 TCGA-IG-A51D-01 5 112770525 112770525 A G TSSK1B Silent p.A4A 0.18 TCGA-IG-A51D-01 5 132158683 132158683 G A SHROOM1 Silent p.V788V 0.19 TCGA-IG-A51D-01 5 132939673 132939673 A C FSTL4 Translation_Start_Site p.M1? 0.13 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-IG-A51D-01 5 13776634 13776634 C T DNAH5 Missense_Mutation p.R3096Q 0.17 possibly_damaging(0.553) TCGA-IG-A51D-01 5 140215259 140215259 G T PCDHA7 Missense_Mutation p.G431C 0.15 deleterious_low_confidence(0.02) probably_damaging(0.925) TCGA-IG-A51D-01 5 140228251 140228251 G A PCDHA9 Silent p.A57A 0.18 TCGA-IG-A51D-01 5 158749446 158749446 C T IL12B Silent p.T146T 0.12 TCGA-IG-A51D-01 5 169931422 169931422 C T KCNIP1 5'Flank 0.19 TCGA-IG-A51D-01 5 178311377 178311377 C T ZNF354B 3'UTR 0.25 TCGA-IG-A51D-01 5 45262430 45262430 G A HCN1 Nonsense_Mutation p.Q756* 0.17 TCGA-IG-A51D-01 5 78417107 78417107 G A BHMT Missense_Mutation p.A182T 0.12 deleterious(0.03) possibly_damaging(0.584) TCGA-IG-A51D-01 5 95128791 95128791 C A RHOBTB3 Missense_Mutation p.H583Q 0.33 deleterious(0.01) possibly_damaging(0.592) TCGA-IG-A51D-01 6 118635678 118635678 G C SLC35F1 3'UTR 0.07 TCGA-IG-A51D-01 6 143828412 143828412 C T FUCA2 Missense_Mutation p.G125D 0.19 deleterious(0) probably_damaging(0.993) TCGA-IG-A51D-01 6 152265629 152265629 C T ESR1 Missense_Mutation p.A361V 0.11 deleterious(0) probably_damaging(0.999) TCGA-IG-A51D-01 6 26452498 26452498 G A BTN3A3 Silent p.P538P 0.24 TCGA-IG-A51D-01 6 35211789 35211789 G A SCUBE3 Silent p.Q707Q 0.16 TCGA-IG-A51D-01 6 52697688 52697688 G A GSTA5 Missense_Mutation p.S172L 0.53 deleterious(0.04) benign(0.323) TCGA-IG-A51D-01 7 100238796 100238796 C T TFR2 Missense_Mutation p.R30Q 0.09 tolerated_low_confidence(1) benign(0.001) TCGA-IG-A51D-01 7 103136182 103136182 C G RELN Missense_Mutation p.M3119I 0.07 tolerated(0.29) benign(0.101) TCGA-IG-A51D-01 7 15427133 15427133 G A AGMO Silent p.F285F 0.15 TCGA-IG-A51D-01 7 19748503 19748503 G A TWISTNB Missense_Mutation p.S46L 0.17 deleterious(0) probably_damaging(0.999) TCGA-IG-A51D-01 7 4247736 4247736 C G SDK1 Nonsense_Mutation p.Y1740* 0.12 TCGA-IG-A51D-01 7 56066786 56066786 C T GBAS 3'UTR 0.25 TCGA-IG-A51D-01 7 82579600 82579600 C T PCLO Missense_Mutation p.R3435Q 0.10 unknown(0) TCGA-IG-A51D-01 7 8791241 8791241 C A NXPH1 Missense_Mutation p.Q220K 0.16 tolerated(0.09) possibly_damaging(0.792) TCGA-IG-A51D-01 7 89859299 89859299 T C STEAP2 Silent p.S378S 0.56 TCGA-IG-A51D-01 8 12040280 12040280 T A FAM86B1 3'UTR 0.03 TCGA-IG-A51D-01 8 133192457 133192457 G A KCNQ3 Missense_Mutation p.R242W 0.12 deleterious(0) probably_damaging(0.967) TCGA-IG-A51D-01 8 143999142 143999142 C G CYP11B2 Missense_Mutation p.E39Q 0.12 tolerated(0.05) possibly_damaging(0.792) TCGA-IG-A51D-01 8 144989388 144989388 G C PLEC 3'UTR 0.25 TCGA-IG-A51D-01 8 145577021 145577021 C A TMEM249 Missense_Mutation p.S232I 0.28 deleterious_low_confidence(0.03) benign(0.048) TCGA-IG-A51D-01 8 27898648 27898648 C T NUGGC Missense_Mutation p.A511T 0.11 tolerated(0.2) benign(0.04) TCGA-IG-A51D-01 8 37730432 37730432 A T RAB11FIP1 Missense_Mutation p.L630M 0.38 tolerated(0.06) possibly_damaging(0.885) TCGA-IG-A51D-01 8 42274276 42274276 C G SLC20A2 3'UTR 0.19 TCGA-IG-A51D-01 8 53852501 53852501 G A NPBWR1 Missense_Mutation p.A12T 0.07 tolerated(0.56) benign(0) TCGA-IG-A51D-01 8 70405348 70405348 G A SULF1 Intron 0.08 TCGA-IG-A51D-01 8 72110634 72110634 A T EYA1 3'UTR 0.08 TCGA-IG-A51D-01 8 82391122 82391122 G A FABP4 Missense_Mutation p.T126M 0.20 deleterious(0.01) possibly_damaging(0.669) TCGA-IG-A51D-01 8 88297028 88297028 T C CNBD1 Silent p.Y298Y 0.16 TCGA-IG-A51D-01 8 97622459 97622459 T A SDC2 3'UTR 0.17 TCGA-IG-A51D-01 8 98285805 98285805 T C TSPYL5 3'UTR 0.14 TCGA-IG-A51D-01 8 98737255 98737255 G A MTDH 3'UTR 0.10 TCGA-IG-A51D-01 8 98973737 98973737 G C MATN2 Missense_Mutation p.E313Q 0.13 tolerated(0.43) benign(0.101) TCGA-IG-A51D-01 9 104356900 104356900 C T PPP3R2 Missense_Mutation p.D105N 0.15 tolerated(0.08) benign(0.257) TCGA-IG-A51D-01 9 111741738 111741738 C T CTNNAL1 Silent p.E308E 0.13 TCGA-IG-A51D-01 9 116135698 116135698 C G BSPRY 3'Flank 0.33 TCGA-IG-A51D-01 9 116344 116344 G A FOXD4 3'UTR 0.08 TCGA-IG-A51D-01 9 124538484 124538484 C T DAB2IP Missense_Mutation p.A1015V 0.13 tolerated(0.59) benign(0.004) TCGA-IG-A51D-01 9 125424367 125424367 G T OR1L1 Missense_Mutation p.A125S 0.15 deleterious(0) probably_damaging(0.991) TCGA-IG-A51D-01 9 140476993 140476993 C T ZMYND19 3'UTR 0.09 TCGA-IG-A51D-01 9 18776926 18776926 C T ADAMTSL1 Missense_Mutation p.P900L 0.61 deleterious(0) probably_damaging(0.951) TCGA-IG-A51D-01 9 399175 399175 C T DOCK8 Silent p.I1050I 0.14 TCGA-IG-A51D-01 9 91609064 91609064 C T C9orf47 3'UTR 0.25 TCGA-IG-A51D-01 X 104464794 104464794 G A TEX13A Silent p.F96F 0.27 TCGA-IG-A51D-01 X 105066676 105066676 C T NRK 5'UTR 0.24 TCGA-IG-A51D-01 X 114425871 114425871 C T RBMXL3 Missense_Mutation p.R623C 0.24 deleterious_low_confidence(0.01) benign(0.255) TCGA-IG-A51D-01 X 1409284 1409284 G T CSF2RA Silent p.V176V 0.18 TCGA-IG-A51D-01 X 16864049 16864050 CT - RBBP7 Frame_Shift_Del p.G415Tfs*4 0.30 TCGA-IG-A51D-01 X 44950110 44950110 G A KDM6A Splice_Site p.X1293_splice 0.48 TCGA-IG-A51D-01 X 79698219 79698219 G A FAM46D Missense_Mutation p.A61T 0.27 tolerated(0.16) benign(0.004) TCGA-IG-A5B8-01 10 105885465 105885465 C T SFR1 3'UTR 0.18 TCGA-IG-A5B8-01 10 124924555 124924555 C T BUB3 3'UTR 0.23 TCGA-IG-A5B8-01 10 13174166 13174166 A G OPTN Missense_Mutation p.K501E 0.12 deleterious(0) possibly_damaging(0.488) TCGA-IG-A5B8-01 10 133930673 133930673 G C JAKMIP3 Missense_Mutation p.K76N 0.12 deleterious(0) probably_damaging(0.913) TCGA-IG-A5B8-01 10 135053603 135053603 C T VENTX Silent p.S190S 0.42 TCGA-IG-A5B8-01 10 22690153 22690153 C G SPAG6 Missense_Mutation p.L421V 0.12 deleterious(0.02) probably_damaging(0.931) TCGA-IG-A5B8-01 10 27434388 27434388 G C YME1L1 Silent p.V157V 0.17 TCGA-IG-A5B8-01 10 31809970 31809970 T C ZEB1 Silent p.P570P 0.15 TCGA-IG-A5B8-01 10 34626223 34626223 G C PARD3 Nonsense_Mutation p.S850* 0.37 TCGA-IG-A5B8-01 10 42907305 42907305 C T CCNYL2 RNA 0.15 TCGA-IG-A5B8-01 10 48372131 48372131 G C ZNF488 3'UTR 0.08 TCGA-IG-A5B8-01 10 81904016 81904016 T C PLAC9 Missense_Mutation p.V67A 0.10 deleterious(0) possibly_damaging(0.728) TCGA-IG-A5B8-01 10 91492754 91492754 C G KIF20B Nonsense_Mutation p.S789* 0.29 TCGA-IG-A5B8-01 10 97373617 97373617 C A ALDH18A1 Missense_Mutation p.R602I 0.16 tolerated(0.41) possibly_damaging(0.844) TCGA-IG-A5B8-01 11 103152935 103152935 G A DYNC2H1 Missense_Mutation p.V3604I 0.25 benign(0.02) TCGA-IG-A5B8-01 11 105850508 105850508 G A GRIA4 3'UTR 0.28 TCGA-IG-A5B8-01 11 119050456 119050456 C T NLRX1 Nonsense_Mutation p.Q576* 0.09 TCGA-IG-A5B8-01 11 11985989 11985989 C G DKK3 3'UTR 0.24 TCGA-IG-A5B8-01 11 123597553 123597553 C T ZNF202 Missense_Mutation p.E367K 0.27 tolerated(0.09) benign(0.383) TCGA-IG-A5B8-01 11 21594756 21594756 T G NELL1 Missense_Mutation p.L728R 0.28 deleterious(0) possibly_damaging(0.848) TCGA-IG-A5B8-01 11 26719966 26719966 G A SLC5A12 Missense_Mutation p.S313L 0.28 deleterious(0.03) benign(0.133) TCGA-IG-A5B8-01 11 31392295 31392295 G C DNAJC24 5'UTR 0.21 TCGA-IG-A5B8-01 11 34515144 34515144 G A ELF5 Silent p.F89F 0.45 TCGA-IG-A5B8-01 11 36596806 36596806 C G RAG1 Missense_Mutation p.S651C 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-IG-A5B8-01 11 45954387 45954387 C T PHF21A 3'Flank 0.30 TCGA-IG-A5B8-01 11 46331554 46331554 G C CREB3L1 Missense_Mutation p.M177I 0.28 tolerated(0.24) benign(0.003) TCGA-IG-A5B8-01 11 46407355 46407355 C T CHRM4 Silent p.K251K 0.23 TCGA-IG-A5B8-01 11 46563842 46563842 C T AMBRA1 Silent p.L485L 0.32 TCGA-IG-A5B8-01 11 47447783 47447783 C T PSMC3 Silent p.K16K 0.07 TCGA-IG-A5B8-01 11 55872714 55872714 C T OR8H2 Missense_Mutation p.H66Y 0.15 deleterious(0.03) probably_damaging(0.939) TCGA-IG-A5B8-01 11 55927085 55927085 C A OR8K5 Missense_Mutation p.A237S 0.09 deleterious_low_confidence(0.01) benign(0.303) TCGA-IG-A5B8-01 11 57428246 57428246 C T CLP1 Missense_Mutation p.R206C 0.12 tolerated(0.06) benign(0.021) TCGA-IG-A5B8-01 11 57982698 57982698 C T OR1S1 Missense_Mutation p.S161L 0.26 tolerated(0.05) benign(0.207) TCGA-IG-A5B8-01 11 6048626 6048626 G T OR56A1 Silent p.A103A 0.22 TCGA-IG-A5B8-01 11 61734848 61734848 G A FTH1 Missense_Mutation p.S17L 0.32 deleterious(0.02) benign(0.012) TCGA-IG-A5B8-01 11 63065028 63065028 C G SLC22A10 Intron 0.16 TCGA-IG-A5B8-01 11 66299165 66299165 G T BBS1 Missense_Mutation p.E549D 0.21 tolerated(0.16) benign(0.084) TCGA-IG-A5B8-01 11 66384399 66384399 A T RBM14-RBM4 Missense_Mutation p.M70L 0.26 tolerated(0.53) benign(0.035) TCGA-IG-A5B8-01 11 6741187 6741187 C G GVINP1 RNA 0.14 TCGA-IG-A5B8-01 11 68125233 68125233 A T LRP5 Missense_Mutation p.I202F 0.18 deleterious(0) probably_damaging(0.934) TCGA-IG-A5B8-01 11 70332425 70332425 C G SHANK2 Missense_Mutation p.D1326H 0.29 tolerated(0.07) possibly_damaging(0.861) TCGA-IG-A5B8-01 11 77103569 77103569 C T PAK1 5'UTR 0.20 TCGA-IG-A5B8-01 11 82996871 82996871 C T CCDC90B Intron 0.12 TCGA-IG-A5B8-01 11 836150 836150 C A CD151 Missense_Mutation p.F27L 0.16 deleterious(0) possibly_damaging(0.812) TCGA-IG-A5B8-01 11 92538330 92538330 C T FAT3 Nonsense_Mutation p.R2970* 0.23 TCGA-IG-A5B8-01 12 104381123 104381123 G A TDG 3'UTR 0.16 TCGA-IG-A5B8-01 12 106632149 106632149 C G CKAP4 3'UTR 0.15 TCGA-IG-A5B8-01 12 107281648 107281648 G C RIC8B 3'Flank 0.17 TCGA-IG-A5B8-01 12 108051486 108051486 C T BTBD11 Silent p.S1102S 0.15 TCGA-IG-A5B8-01 12 109647044 109647044 C T ACACB Silent p.I1045I 0.14 TCGA-IG-A5B8-01 12 117204678 117204678 C G RNFT2 Silent p.L229L 0.19 TCGA-IG-A5B8-01 12 121202843 121202843 A G SPPL3 Missense_Mutation p.F372L 0.24 tolerated(0.14) benign(0.017) TCGA-IG-A5B8-01 12 122865061 122865061 G A CLIP1 5'Flank 0.22 TCGA-IG-A5B8-01 12 123907666 123907666 C A RILPL2 Missense_Mutation p.R177I 0.12 tolerated(0.29) benign(0.315) TCGA-IG-A5B8-01 12 124111668 124111668 C T EIF2B1 Silent p.L135L 0.08 TCGA-IG-A5B8-01 12 124111678 124111678 C T EIF2B1 Missense_Mutation p.R132K 0.07 tolerated(0.24) benign(0.137) TCGA-IG-A5B8-01 12 124343712 124343712 C T DNAH10 Nonsense_Mutation p.Q2098* 0.14 TCGA-IG-A5B8-01 12 13364445 13364446 - T EMP1 Frame_Shift_Ins p.M1? 0.32 TCGA-IG-A5B8-01 12 14589064 14589064 C G ATF7IP Missense_Mutation p.S557C 0.47 deleterious_low_confidence(0) possibly_damaging(0.843) TCGA-IG-A5B8-01 12 176445 176445 C T IQSEC3 Missense_Mutation p.H133Y 0.20 tolerated_low_confidence(0.13) benign(0.127) TCGA-IG-A5B8-01 12 21981923 21981923 G A ABCC9 Missense_Mutation p.S1213L 0.31 tolerated(0.07) benign(0.022) TCGA-IG-A5B8-01 12 32754265 32754265 G C FGD4 Missense_Mutation p.E248D 0.19 tolerated(0.6) benign(0.123) TCGA-IG-A5B8-01 12 32975511 32975511 C G PKP2 Missense_Mutation p.E621Q 0.06 deleterious(0) benign(0.165) TCGA-IG-A5B8-01 12 431719 431719 G A KDM5A Nonsense_Mutation p.R764* 0.18 TCGA-IG-A5B8-01 12 4922632 4922632 C T KCNA6 3'UTR 0.15 TCGA-IG-A5B8-01 12 50524336 50524336 C T CERS5 Missense_Mutation p.E391K 0.21 deleterious_low_confidence(0.02) benign(0.014) TCGA-IG-A5B8-01 12 51455218 51455218 C T CSRNP2 3'UTR 0.13 TCGA-IG-A5B8-01 12 51583707 51583707 G A POU6F1 3'UTR 0.36 TCGA-IG-A5B8-01 12 55423762 55423762 C T NEUROD4 3'UTR 0.19 TCGA-IG-A5B8-01 12 57486239 57486239 C T NAB2 Silent p.I322I 0.15 TCGA-IG-A5B8-01 12 58112103 58112103 G C OS9 Missense_Mutation p.E437Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-IG-A5B8-01 12 72317933 72317933 C T TBC1D15 3'UTR 0.25 TCGA-IG-A5B8-01 12 96389545 96389545 C T HAL Silent p.V48V 0.12 TCGA-IG-A5B8-01 12 96974874 96974874 C G C12orf55 Missense_Mutation p.F1022L 0.11 tolerated(0.1) benign(0.102) TCGA-IG-A5B8-01 13 37422854 37422854 G A SMAD9 Nonsense_Mutation p.Q455* 0.32 TCGA-IG-A5B8-01 13 52542702 52542702 C G ATP7B Missense_Mutation p.E529Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-IG-A5B8-01 13 52604065 52604065 C T UTP14C Silent p.F375F 0.29 TCGA-IG-A5B8-01 13 78493499 78493499 G A EDNRB Intron 0.35 TCGA-IG-A5B8-01 13 88331700 88331700 G A SLITRK5 3'UTR 0.24 TCGA-IG-A5B8-01 13 99087937 99087937 G T FARP1 Missense_Mutation p.D751Y 0.60 deleterious(0) probably_damaging(0.987) TCGA-IG-A5B8-01 14 105052817 105052817 G C C14orf180 Missense_Mutation p.R17P 0.09 tolerated(0.21) benign(0) TCGA-IG-A5B8-01 14 23345309 23345309 G C LRP10 Missense_Mutation p.Q384H 0.14 deleterious(0) probably_damaging(0.999) TCGA-IG-A5B8-01 14 23345331 23345331 G A LRP10 Missense_Mutation p.D392N 0.15 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 14 24709275 24709276 - TT TINF2 Frame_Shift_Ins p.G406Kfs*17 0.22 TCGA-IG-A5B8-01 14 30068914 30068914 G C PRKD1 Nonsense_Mutation p.S672* 0.27 TCGA-IG-A5B8-01 14 39652095 39652095 A C PNN 3'UTR 0.26 TCGA-IG-A5B8-01 14 45542772 45542772 A T FAM179B 3'UTR 0.21 TCGA-IG-A5B8-01 14 50649280 50649280 C T SOS2 Silent p.L253L 0.16 TCGA-IG-A5B8-01 14 51188286 51188286 C T NIN 3'Flank 0.38 TCGA-IG-A5B8-01 14 64612848 64612848 G C SYNE2 Missense_Mutation p.L5182F 0.26 probably_damaging(0.996) TCGA-IG-A5B8-01 14 67746085 67746085 G C MPP5 Missense_Mutation p.M66I 0.14 tolerated(0.33) benign(0) TCGA-IG-A5B8-01 14 73460063 73460063 G A ZFYVE1 Missense_Mutation p.H331Y 0.11 deleterious(0.03) benign(0.004) TCGA-IG-A5B8-01 14 73586949 73586949 G A RBM25 3'UTR 0.27 TCGA-IG-A5B8-01 14 77872265 77872265 G A NOXRED1 Missense_Mutation p.S299F 0.34 tolerated(0.68) benign(0.004) TCGA-IG-A5B8-01 14 81251350 81251350 G T CEP128 Silent p.L700L 0.13 TCGA-IG-A5B8-01 14 88904786 88904786 C G SPATA7 3'UTR 0.26 TCGA-IG-A5B8-01 14 94722887 94722887 G C PPP4R4 Silent p.V652V 0.22 TCGA-IG-A5B8-01 14 95999711 95999711 G T GLRX5 5'Flank 0.12 TCGA-IG-A5B8-01 15 25654293 25654293 T C UBE3A 5'Flank 0.29 TCGA-IG-A5B8-01 15 41816047 41816047 C T RPAP1 Silent p.E786E 0.37 TCGA-IG-A5B8-01 15 42836236 42836236 G T LRRC57 3'UTR 0.26 TCGA-IG-A5B8-01 15 43817462 43817462 C T MAP1A Missense_Mutation p.S1264L 0.36 benign(0.005) TCGA-IG-A5B8-01 15 49285065 49285065 C T SECISBP2L Silent p.E894E 0.26 TCGA-IG-A5B8-01 15 62209602 62209602 G A VPS13C Missense_Mutation p.H2665Y 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-IG-A5B8-01 15 74565109 74565109 C T CCDC33 Intron 0.20 TCGA-IG-A5B8-01 15 89182739 89182739 G C ISG20 Missense_Mutation p.E48Q 0.18 tolerated(0.07) benign(0.037) TCGA-IG-A5B8-01 16 1020870 1020870 G A LMF1 Silent p.P37P 0.17 TCGA-IG-A5B8-01 16 1463960 1463960 G C UNKL Silent p.L58L 0.40 TCGA-IG-A5B8-01 16 15715632 15715632 G C KIAA0430 Nonsense_Mutation p.S866* 0.18 TCGA-IG-A5B8-01 16 20362149 20362149 G C UMOD Intron 0.08 TCGA-IG-A5B8-01 16 2259163 2259163 G T MLST8 3'UTR 0.25 TCGA-IG-A5B8-01 16 23769008 23769008 C G CHP2 3'UTR 0.27 TCGA-IG-A5B8-01 16 2522730 2522730 C T NTN3 Silent p.R319R 0.18 TCGA-IG-A5B8-01 16 2711935 2711935 G C ERVK13-1 RNA 0.10 TCGA-IG-A5B8-01 16 27475803 27475803 C T GTF3C1 Missense_Mutation p.G1904R 0.19 tolerated(0.21) benign(0.054) TCGA-IG-A5B8-01 16 3023093 3023093 G A PKMYT1 Intron 0.37 TCGA-IG-A5B8-01 16 31470831 31470831 G A ARMC5 5'UTR 0.16 TCGA-IG-A5B8-01 16 46761262 46761262 C A MYLK3 Silent p.R600R 0.20 TCGA-IG-A5B8-01 16 48295447 48295447 C A LONP2 Missense_Mutation p.T279K 0.14 tolerated(0.72) benign(0.035) TCGA-IG-A5B8-01 16 48575913 48575913 G C N4BP1 3'UTR 0.30 TCGA-IG-A5B8-01 16 56704480 56704480 A G MT1H Missense_Mutation p.K31E 0.09 deleterious(0.02) unknown(0) TCGA-IG-A5B8-01 16 58001173 58001173 C G CNGB1 Missense_Mutation p.Q6H 0.12 tolerated_low_confidence(0.05) probably_damaging(0.969) TCGA-IG-A5B8-01 16 63247 63247 G A WASH4P 3'Flank 0.19 TCGA-IG-A5B8-01 16 67223572 67223572 G C EXOC3L1 Nonsense_Mutation p.S3* 0.07 TCGA-IG-A5B8-01 16 67470642 67470642 C T HSD11B2 Silent p.L318L 0.12 TCGA-IG-A5B8-01 16 67471214 67471214 C T HSD11B2 3'UTR 0.12 TCGA-IG-A5B8-01 16 67693165 67693165 C A ACD Nonsense_Mutation p.E240* 0.14 TCGA-IG-A5B8-01 16 69373946 69373946 G C NIP7 Missense_Mutation p.D32H 0.35 deleterious(0) probably_damaging(0.974) TCGA-IG-A5B8-01 16 74425817 74425817 G C NPIPB15 Missense_Mutation p.E391Q 0.05 deleterious_low_confidence(0.03) benign(0.446) TCGA-IG-A5B8-01 16 75512762 75512762 G A CHST6 Missense_Mutation p.S322L 0.14 deleterious(0.02) benign(0.311) TCGA-IG-A5B8-01 16 77317946 77317946 G C ADAMTS18 Missense_Mutation p.F1191L 0.14 tolerated(0.51) benign(0.001) TCGA-IG-A5B8-01 16 812752 812752 G T MSLN Silent p.L24L 0.43 TCGA-IG-A5B8-01 16 88909193 88909193 C G GALNS Missense_Mutation p.E55D 0.07 tolerated(0.07) possibly_damaging(0.46) TCGA-IG-A5B8-01 16 89805460 89805460 C T FANCA Intron 0.22 TCGA-IG-A5B8-01 16 90110451 90110451 C G GAS8 3'UTR 0.16 TCGA-IG-A5B8-01 17 18882138 18882138 C T FAM83G Missense_Mutation p.D281N 0.22 deleterious(0) probably_damaging(0.982) TCGA-IG-A5B8-01 17 18907093 18907093 G A FAM83G Nonsense_Mutation p.Q88* 0.43 TCGA-IG-A5B8-01 17 18907111 18907111 G A FAM83G Missense_Mutation p.R82W 0.44 deleterious(0) probably_damaging(0.993) TCGA-IG-A5B8-01 17 26512224 26512224 A G NLK Missense_Mutation p.Y390C 0.27 tolerated(0.06) probably_damaging(0.99) TCGA-IG-A5B8-01 17 29527461 29527461 C T NF1 Nonsense_Mutation p.R304* 0.35 TCGA-IG-A5B8-01 17 33336237 33336237 A C RFFL 3'UTR 0.20 TCGA-IG-A5B8-01 17 43344565 43344565 T A MAP3K14-AS1 RNA 0.64 TCGA-IG-A5B8-01 17 5433952 5433952 C T NLRP1 Silent p.V1123V 0.12 TCGA-IG-A5B8-01 17 56271143 56271143 G A EPX Missense_Mutation p.E139K 0.31 tolerated(0.62) benign(0.069) TCGA-IG-A5B8-01 17 59938866 59938866 C T BRIP1 Missense_Mutation p.G12E 0.52 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 17 68130729 68130729 G C KCNJ16 3'UTR 0.45 TCGA-IG-A5B8-01 17 68174799 68174799 G C KCNJ2 3'UTR 0.61 TCGA-IG-A5B8-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.47 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 17 76525741 76525741 C G DNAH17 Missense_Mutation p.R1107T 0.24 benign(0.005) TCGA-IG-A5B8-01 17 79005303 79005303 T A BAIAP2 5'Flank 0.56 TCGA-IG-A5B8-01 17 7910834 7910834 C T GUCY2D Silent p.G518G 0.50 TCGA-IG-A5B8-01 17 80442792 80442792 G A NARF Missense_Mutation p.E313K 0.09 tolerated(0.89) benign(0.086) TCGA-IG-A5B8-01 17 80442801 80442801 G A NARF Missense_Mutation p.E316K 0.09 tolerated(0.68) benign(0.013) TCGA-IG-A5B8-01 17 8045267 8045267 C T PER1 Missense_Mutation p.M1152I 0.32 tolerated(0.71) benign(0.006) TCGA-IG-A5B8-01 17 80879433 80879433 C T TBCD Missense_Mutation p.H720Y 0.14 tolerated(0.57) benign(0.308) TCGA-IG-A5B8-01 18 33048694 33048694 C T INO80C Missense_Mutation p.D190N 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-IG-A5B8-01 18 33606966 33606966 C T RPRD1A Missense_Mutation p.R229K 0.14 deleterious(0.03) benign(0.391) TCGA-IG-A5B8-01 18 5291265 5291265 G A ZBTB14 Silent p.F314F 0.13 TCGA-IG-A5B8-01 18 54363617 54363617 C G WDR7 Missense_Mutation p.S501C 0.50 deleterious(0) possibly_damaging(0.711) TCGA-IG-A5B8-01 18 60646373 60646373 G T PHLPP1 Silent p.R1621R 0.45 TCGA-IG-A5B8-01 18 65180716 65180716 G A DSEL Missense_Mutation p.S387L 0.15 deleterious(0) probably_damaging(0.999) TCGA-IG-A5B8-01 18 66381131 66381133 ACA - TMX3 In_Frame_Del p.V18del 0.59 TCGA-IG-A5B8-01 19 10204497 10204497 C T ANGPTL6 Missense_Mutation p.E275K 0.27 tolerated(0.26) possibly_damaging(0.543) TCGA-IG-A5B8-01 19 10395227 10395227 G A ICAM1 Silent p.L358L 0.19 TCGA-IG-A5B8-01 19 10428108 10428108 A G RAVER1 3'UTR 0.26 TCGA-IG-A5B8-01 19 10579350 10579350 C T PDE4A 3'Flank 0.21 TCGA-IG-A5B8-01 19 13264138 13264138 C G IER2 Silent p.L46L 0.20 TCGA-IG-A5B8-01 19 14044798 14044798 G A PODNL1 Silent p.L227L 0.24 TCGA-IG-A5B8-01 19 14675792 14675792 C T TECR Silent p.L198L 0.22 TCGA-IG-A5B8-01 19 16178531 16178531 G A TPM4 Missense_Mutation p.E33K 0.11 deleterious(0.04) possibly_damaging(0.847) TCGA-IG-A5B8-01 19 18324249 18324249 T C PDE4C Missense_Mutation p.T513A 0.06 deleterious(0) probably_damaging(0.989) TCGA-IG-A5B8-01 19 18775188 18775188 G C KLHL26 Silent p.L67L 0.24 TCGA-IG-A5B8-01 19 19790859 19790859 G A ZNF101 Missense_Mutation p.R354Q 0.17 tolerated(0.71) benign(0.416) TCGA-IG-A5B8-01 19 19976767 19976767 G C ZNF253 5'UTR 0.33 TCGA-IG-A5B8-01 19 22379731 22379731 C T ZNF676 5'UTR 0.31 TCGA-IG-A5B8-01 19 3543359 3543359 G A C19orf71 Silent p.S70S 0.28 TCGA-IG-A5B8-01 19 37241489 37241489 G C ZNF850 Missense_Mutation p.F151L 0.23 deleterious(0.03) possibly_damaging(0.878) TCGA-IG-A5B8-01 19 38039934 38039934 G A ZNF540 5'Flank 0.21 TCGA-IG-A5B8-01 19 38104049 38104049 C G ZNF540 Missense_Mutation p.T623S 0.28 tolerated(0.15) benign(0.089) TCGA-IG-A5B8-01 19 38380747 38380747 G A WDR87 Silent p.L1149L 0.19 TCGA-IG-A5B8-01 19 39208683 39208683 G A ACTN4 Silent p.Q420Q 0.27 TCGA-IG-A5B8-01 19 40320544 40320544 C A DYRK1B Missense_Mutation p.D166Y 0.16 deleterious(0) probably_damaging(0.948) TCGA-IG-A5B8-01 19 42265341 42265341 C G CEACAM6 Silent p.L203L 0.27 TCGA-IG-A5B8-01 19 46190949 46190949 C T SNRPD2 Missense_Mutation p.M73I 0.22 tolerated(0.15) benign(0.079) TCGA-IG-A5B8-01 19 46283468 46283468 C T DMPK 5'UTR 0.15 TCGA-IG-A5B8-01 19 46283590 46283590 C G DMPK 5'UTR 0.25 TCGA-IG-A5B8-01 19 47111561 47111561 G T CALM3 Nonsense_Mutation p.E48* 0.16 TCGA-IG-A5B8-01 19 47844098 47844098 C T C5AR2 Silent p.S14S 0.24 TCGA-IG-A5B8-01 19 50185264 50185264 C T PRMT1 Missense_Mutation p.S97L 0.17 deleterious(0) possibly_damaging(0.832) TCGA-IG-A5B8-01 19 51875019 51875019 C G NKG7 3'UTR 0.15 TCGA-IG-A5B8-01 19 52568449 52568449 G C ZNF841 Missense_Mutation p.Q896E 0.24 tolerated(0.09) benign(0.019) TCGA-IG-A5B8-01 19 52877592 52877592 G A ZNF880 Silent p.E60E 0.21 TCGA-IG-A5B8-01 19 53625823 53625823 C T ZNF415 5'UTR 0.15 TCGA-IG-A5B8-01 19 56515193 56515193 C T NLRP5 Silent p.L58L 0.16 TCGA-IG-A5B8-01 19 56703331 56703331 C G ZSCAN5B Missense_Mutation p.R159T 0.18 tolerated(0.57) benign(0.159) TCGA-IG-A5B8-01 19 57967238 57967238 C A VN1R1 Missense_Mutation p.G206V 0.33 tolerated(0.14) possibly_damaging(0.474) TCGA-IG-A5B8-01 19 58458845 58458845 G A ZNF256 5'UTR 0.10 TCGA-IG-A5B8-01 19 6374962 6374962 G C ALKBH7 Missense_Mutation p.G215A 0.16 tolerated_low_confidence(0.35) benign(0.014) TCGA-IG-A5B8-01 19 9010665 9010665 G A MUC16 Missense_Mutation p.S12999F 0.13 possibly_damaging(0.636) TCGA-IG-A5B8-01 19 9089301 9089301 G A MUC16 Silent p.L838L 0.28 TCGA-IG-A5B8-01 19 9971454 9971454 G A OLFM2 Missense_Mutation p.P27L 0.16 deleterious(0) probably_damaging(0.938) TCGA-IG-A5B8-01 1 1263592 1263592 G A GLTPD1 3'UTR 0.14 TCGA-IG-A5B8-01 1 12918848 12918848 C G PRAMEF2 5'UTR 0.08 TCGA-IG-A5B8-01 1 1431023 1431023 G C ATAD3B Missense_Mutation p.E591D 0.06 tolerated_low_confidence(0.55) benign(0) TCGA-IG-A5B8-01 1 149783597 149783597 C G HIST2H2BF Missense_Mutation p.E94D 0.09 deleterious_low_confidence(0.02) benign(0.387) TCGA-IG-A5B8-01 1 150236222 150236222 T C CA14 Silent p.L298L 0.13 TCGA-IG-A5B8-01 1 154245820 154245820 A T HAX1 Missense_Mutation p.D21V 0.43 deleterious(0) probably_damaging(0.983) TCGA-IG-A5B8-01 1 155110171 155110171 C A SLC50A1 Missense_Mutation p.S139R 0.26 deleterious(0.03) possibly_damaging(0.888) TCGA-IG-A5B8-01 1 156347784 156347784 G T RHBG Missense_Mutation p.M126I 0.16 tolerated(0.12) benign(0.238) TCGA-IG-A5B8-01 1 156524141 156524141 G A IQGAP3 Missense_Mutation p.S445L 0.20 deleterious(0.02) possibly_damaging(0.78) TCGA-IG-A5B8-01 1 158533238 158533238 G A OR6P1 Missense_Mutation p.P53S 0.29 tolerated(0.99) benign(0.002) TCGA-IG-A5B8-01 1 159002344 159002344 G A IFI16 Missense_Mutation p.D398N 0.19 tolerated(0.48) probably_damaging(0.932) TCGA-IG-A5B8-01 1 15901458 15901458 T A DNAJC16 3'Flank 0.15 TCGA-IG-A5B8-01 1 16382251 16382251 G A CLCNKB Missense_Mutation p.E643K 0.05 tolerated(0.15) benign(0.142) TCGA-IG-A5B8-01 1 165377516 165377516 C T RXRG Silent p.Q362Q 0.25 TCGA-IG-A5B8-01 1 165737460 165737460 C T TMCO1 Silent p.L90L 0.21 TCGA-IG-A5B8-01 1 169524417 169524417 C T F5 Intron 0.17 TCGA-IG-A5B8-01 1 171165874 171165874 G A FMO2 Silent p.Q136Q 0.11 TCGA-IG-A5B8-01 1 172437700 172437700 G C C1orf105 Missense_Mutation p.R173T 0.13 deleterious(0.01) benign(0.402) TCGA-IG-A5B8-01 1 181752870 181752870 C G CACNA1E Missense_Mutation p.S1807C 0.31 deleterious(0) possibly_damaging(0.7) TCGA-IG-A5B8-01 1 186050412 186050412 G A HMCN1 Silent p.L2891L 0.10 TCGA-IG-A5B8-01 1 19510631 19510631 G T UBR4 Silent p.T659T 0.19 TCGA-IG-A5B8-01 1 19683172 19683172 G C CAPZB Missense_Mutation p.S182C 0.07 deleterious(0.02) benign(0.008) TCGA-IG-A5B8-01 1 197059154 197059154 G A ASPM Missense_Mutation p.S3297F 0.20 tolerated(0.19) benign(0.009) TCGA-IG-A5B8-01 1 203013536 203013536 G A PPFIA4 Silent p.E177E 0.30 TCGA-IG-A5B8-01 1 203743776 203743776 G A LAX1 Silent p.Q388Q 0.24 TCGA-IG-A5B8-01 1 204086794 204086794 C T SOX13 Missense_Mutation p.S245F 0.21 tolerated(0.15) benign(0.374) TCGA-IG-A5B8-01 1 206822509 206822509 A G DYRK3 3'UTR 0.25 TCGA-IG-A5B8-01 1 20827622 20827622 G C MUL1 Missense_Mutation p.S207C 0.09 tolerated(0.12) benign(0.006) TCGA-IG-A5B8-01 1 209800282 209800282 C T LAMB3 Silent p.L509L 0.38 TCGA-IG-A5B8-01 1 215848443 215848443 C T USH2A Silent p.V4270V 0.26 TCGA-IG-A5B8-01 1 216420404 216420404 C T USH2A Missense_Mutation p.D778N 0.11 possibly_damaging(0.533) TCGA-IG-A5B8-01 1 21808259 21808259 G T NBPF3 Missense_Mutation p.D535Y 0.19 deleterious(0) possibly_damaging(0.773) TCGA-IG-A5B8-01 1 220088979 220088979 G A SLC30A10 Missense_Mutation p.H424Y 0.26 deleterious(0.05) benign(0.016) TCGA-IG-A5B8-01 1 226026976 226026976 C A EPHX1 Missense_Mutation p.F217L 0.32 deleterious(0.03) probably_damaging(0.983) TCGA-IG-A5B8-01 1 226032974 226032974 T A EPHX1 Missense_Mutation p.F432I 0.11 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 1 23520393 23520393 C T HTR1D Missense_Mutation p.G107D 0.20 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 1 237954760 237954760 G A RYR2 Missense_Mutation p.R4503K 0.20 possibly_damaging(0.694) TCGA-IG-A5B8-01 1 237955559 237955559 G A RYR2 Missense_Mutation p.R4573H 0.13 probably_damaging(0.98) TCGA-IG-A5B8-01 1 240654646 240654646 G C GREM2 3'UTR 0.20 TCGA-IG-A5B8-01 1 246943704 246943704 C T RP11-439E19.10 3'Flank 0.24 TCGA-IG-A5B8-01 1 24766717 24766717 C T NIPAL3 Missense_Mutation p.A50V 0.13 deleterious(0) probably_damaging(0.936) TCGA-IG-A5B8-01 1 248790179 248790179 G C OR2T11 Missense_Mutation p.S84C 0.23 tolerated(0.17) possibly_damaging(0.595) TCGA-IG-A5B8-01 1 249141564 249141564 C T ZNF672 Nonsense_Mutation p.R31* 0.11 TCGA-IG-A5B8-01 1 249211564 249211564 C T PGBD2 Missense_Mutation p.P261S 0.17 tolerated(0.06) possibly_damaging(0.461) TCGA-IG-A5B8-01 1 25729208 25729208 G A RHCE Missense_Mutation p.S122L 0.18 deleterious(0.01) benign(0.069) TCGA-IG-A5B8-01 1 28527133 28527133 T C AL353354.1 Missense_Mutation p.H7R 0.30 unknown(0) TCGA-IG-A5B8-01 1 29028959 29028959 C T GMEB1 Missense_Mutation p.T213M 0.21 tolerated(0.05) benign(0.186) TCGA-IG-A5B8-01 1 3673349 3673349 G A CCDC27 Silent p.K202K 0.22 TCGA-IG-A5B8-01 1 43213395 43213395 G A LEPRE1 Missense_Mutation p.T638M 0.28 deleterious(0) probably_damaging(0.983) TCGA-IG-A5B8-01 1 53387333 53387333 G C ECHDC2 Missense_Mutation p.L5V 0.20 tolerated_low_confidence(0.05) benign(0.352) TCGA-IG-A5B8-01 1 5947473 5947473 G A NPHP4 Silent p.V786V 0.23 TCGA-IG-A5B8-01 1 6642271 6642271 G A ZBTB48 Missense_Mutation p.E282K 0.22 tolerated(0.38) benign(0.021) TCGA-IG-A5B8-01 1 85555813 85555813 A G WDR63 Missense_Mutation p.N252S 0.16 deleterious(0.02) probably_damaging(0.94) TCGA-IG-A5B8-01 1 92941516 92941516 G C GFI1 3'UTR 0.24 TCGA-IG-A5B8-01 20 1592044 1592052 ACGTGGTCG GTGTCA SIRPB1 Intron 0.15 TCGA-IG-A5B8-01 20 19981592 19981592 G A RIN2 3'UTR 0.24 TCGA-IG-A5B8-01 20 20269495 20269495 C G C20orf26 Silent p.L1013L 0.14 TCGA-IG-A5B8-01 20 21687102 21687102 C A PAX1 Missense_Mutation p.L105M 0.46 deleterious(0) probably_damaging(0.999) TCGA-IG-A5B8-01 20 3674093 3674093 C T SIGLEC1 Splice_Site p.X1170_splice 0.13 TCGA-IG-A5B8-01 20 40084517 40084517 C T CHD6 Missense_Mutation p.D978N 0.19 deleterious(0.01) probably_damaging(0.983) TCGA-IG-A5B8-01 20 42965973 42965973 C T R3HDML Missense_Mutation p.S59F 0.09 deleterious(0.02) possibly_damaging(0.861) TCGA-IG-A5B8-01 21 34444476 34444476 G A OLIG1 3'UTR 0.33 TCGA-IG-A5B8-01 22 17288835 17288835 G T XKR3 Silent p.L43L 0.28 TCGA-IG-A5B8-01 22 26242238 26242238 C G MYO18B Missense_Mutation p.I1180M 0.43 deleterious(0.02) probably_damaging(0.967) TCGA-IG-A5B8-01 22 39261344 39261344 G C CBX6 3'UTR 0.56 TCGA-IG-A5B8-01 22 41565574 41565574 T G EP300 Missense_Mutation p.Y1414D 0.43 probably_damaging(0.998) TCGA-IG-A5B8-01 22 42033762 42033762 G A XRCC6 Missense_Mutation p.R247H 0.41 deleterious(0.01) benign(0.134) TCGA-IG-A5B8-01 2 100017707 100017707 T C REV1 Silent p.T1251T 0.23 TCGA-IG-A5B8-01 2 100019123 100019123 C A REV1 Missense_Mutation p.W1175C 0.11 deleterious(0) probably_damaging(0.999) TCGA-IG-A5B8-01 2 10008430 10008430 C G TAF1B Nonsense_Mutation p.S142* 0.15 TCGA-IG-A5B8-01 2 103120146 103120146 C T SLC9A4 Silent p.L320L 0.06 TCGA-IG-A5B8-01 2 109089316 109089316 G A GCC2 Missense_Mutation p.D941N 0.16 tolerated(0.17) benign(0.019) TCGA-IG-A5B8-01 2 116599859 116599859 T G DPP10 Missense_Mutation p.F781V 0.39 deleterious(0) possibly_damaging(0.839) TCGA-IG-A5B8-01 2 11765302 11765302 G C GREB1 Missense_Mutation p.W1390C 0.27 tolerated(0.17) probably_damaging(0.972) TCGA-IG-A5B8-01 2 130949566 130949566 G C TUBA3E Silent p.L397L 0.24 TCGA-IG-A5B8-01 2 133174609 133174610 - GAA GPR39 5'UTR 0.24 TCGA-IG-A5B8-01 2 133541104 133541104 C G NCKAP5 Missense_Mutation p.D1094H 0.27 deleterious(0) probably_damaging(0.922) TCGA-IG-A5B8-01 2 153032245 153032245 G C STAM2 5'UTR 0.23 TCGA-IG-A5B8-01 2 185800688 185800688 A C ZNF804A Missense_Mutation p.S189R 0.22 tolerated(0.1) benign(0.348) TCGA-IG-A5B8-01 2 200298187 200298187 C G SATB2 Missense_Mutation p.E74Q 0.20 tolerated(0.15) benign(0.024) TCGA-IG-A5B8-01 2 21229677 21229677 C T APOB Missense_Mutation p.E3355K 0.07 benign(0.084) TCGA-IG-A5B8-01 2 233394716 233394716 C A CHRND Missense_Mutation p.D229E 0.17 tolerated(0.55) benign(0.001) TCGA-IG-A5B8-01 2 238949975 238949975 G C UBE2F Missense_Mutation p.R185T 0.14 deleterious(0) possibly_damaging(0.877) TCGA-IG-A5B8-01 2 27261971 27261971 G A TMEM214 Silent p.L488L 0.22 TCGA-IG-A5B8-01 2 27670443 27670443 G A IFT172 Missense_Mutation p.T1533M 0.11 tolerated(0.07) benign(0.013) TCGA-IG-A5B8-01 2 54081859 54081859 T C GPR75 Missense_Mutation p.N12S 0.28 tolerated_low_confidence(0.08) possibly_damaging(0.477) TCGA-IG-A5B8-01 2 66795917 66795917 C T MEIS1 Intron 0.36 TCGA-IG-A5B8-01 2 75425863 75425863 C T TACR1 Silent p.V66V 0.29 TCGA-IG-A5B8-01 2 85548357 85548357 C A TGOLN2 3'Flank 0.33 TCGA-IG-A5B8-01 2 97530058 97530058 C G SEMA4C Missense_Mutation p.E342Q 0.05 tolerated(0.07) possibly_damaging(0.903) TCGA-IG-A5B8-01 2 97877280 97877280 C G ANKRD36 Intron 0.13 TCGA-IG-A5B8-01 3 111997672 111997672 C T SLC9C1 Missense_Mutation p.M74I 0.08 tolerated(0.59) benign(0.078) TCGA-IG-A5B8-01 3 112534797 112534797 C T CD200R1L 3'UTR 0.11 TCGA-IG-A5B8-01 3 11600101 11600101 G A VGLL4 Missense_Mutation p.R274C 0.14 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-IG-A5B8-01 3 118621345 118621345 G A IGSF11 3'UTR 0.25 TCGA-IG-A5B8-01 3 123419182 123419182 C G MYLK Missense_Mutation p.E1045Q 0.19 deleterious(0.04) benign(0.299) TCGA-IG-A5B8-01 3 12873053 12873053 G T CAND2 Missense_Mutation p.R1155S 0.29 deleterious(0) possibly_damaging(0.72) TCGA-IG-A5B8-01 3 137484324 137484324 C T SOX14 Missense_Mutation p.S233L 0.10 tolerated_low_confidence(0.19) benign(0.32) TCGA-IG-A5B8-01 3 138739627 138739627 C T PRR23B 5'UTR 0.16 TCGA-IG-A5B8-01 3 141162094 141162094 C G ZBTB38 Silent p.S288S 0.32 TCGA-IG-A5B8-01 3 148896253 148896253 C T CP Missense_Mutation p.E943K 0.19 tolerated(0.55) benign(0.008) TCGA-IG-A5B8-01 3 167191546 167191546 T C SERPINI2 Intron 0.39 TCGA-IG-A5B8-01 3 170732382 170732382 C T SLC2A2 Missense_Mutation p.E83K 0.19 tolerated(0.13) benign(0.016) TCGA-IG-A5B8-01 3 186937549 186937549 G A MASP1 3'UTR 0.11 TCGA-IG-A5B8-01 3 193210921 193210921 C T ATP13A4 Missense_Mutation p.R137K 0.17 tolerated(0.43) possibly_damaging(0.884) TCGA-IG-A5B8-01 3 39159627 39159627 G A TTC21A Missense_Mutation p.E262K 0.12 deleterious(0.01) possibly_damaging(0.83) TCGA-IG-A5B8-01 3 52414133 52414133 C T DNAH1 Silent p.L2530L 0.39 TCGA-IG-A5B8-01 3 69788713 69788713 C T MITF 5'UTR 0.24 TCGA-IG-A5B8-01 3 97591374 97591374 G A CRYBG3 Missense_Mutation p.D446N 0.38 TCGA-IG-A5B8-01 3 97591695 97591695 G A CRYBG3 Missense_Mutation p.E553K 0.13 TCGA-IG-A5B8-01 4 119649764 119649764 G C SEC24D Silent p.L970L 0.20 TCGA-IG-A5B8-01 4 123817437 123817437 C A FGF2 3'UTR 0.13 TCGA-IG-A5B8-01 4 147561864 147561864 C T POU4F2 Silent p.I378I 0.16 TCGA-IG-A5B8-01 4 167656000 167656000 G C SPOCK3 3'UTR 0.14 TCGA-IG-A5B8-01 4 17638223 17638223 G A FAM184B Silent p.P904P 0.23 TCGA-IG-A5B8-01 4 188926074 188926074 T - ZFP42 3'UTR 0.16 TCGA-IG-A5B8-01 4 22694548 22694548 C T GBA3 5'UTR 0.10 TCGA-IG-A5B8-01 4 40244925 40244925 G C RHOH 5'UTR 0.14 TCGA-IG-A5B8-01 4 53461615 53461615 G T USP46 3'UTR 0.17 TCGA-IG-A5B8-01 4 57176886 57176886 G C KIAA1211 Missense_Mutation p.E114Q 0.12 deleterious(0.04) probably_damaging(0.988) TCGA-IG-A5B8-01 4 68378268 68378268 A C CENPC Silent p.T488T 0.17 TCGA-IG-A5B8-01 4 68928855 68928855 G C TMPRSS11F Intron 0.33 TCGA-IG-A5B8-01 4 71201540 71201540 G A CABS1 Missense_Mutation p.E262K 0.07 deleterious(0) possibly_damaging(0.908) TCGA-IG-A5B8-01 4 75023442 75023442 A T AC093677.1 Nonsense_Mutation p.L215* 0.15 TCGA-IG-A5B8-01 4 80246828 80246828 C T NAA11 Silent p.P68P 0.38 TCGA-IG-A5B8-01 4 88534007 88534007 G A DSPP Silent p.G223G 0.13 TCGA-IG-A5B8-01 5 108714941 108714941 C T PJA2 Missense_Mutation p.D83N 0.38 tolerated(0.41) benign(0.132) TCGA-IG-A5B8-01 5 113831919 113831919 C G KCNN2 3'UTR 0.21 TCGA-IG-A5B8-01 5 115298659 115298659 G C AQPEP Silent p.L115L 0.14 TCGA-IG-A5B8-01 5 126866085 126866085 A G PRRC1 Missense_Mutation p.I252V 0.20 deleterious(0) probably_damaging(0.994) TCGA-IG-A5B8-01 5 129520357 129520357 G C CHSY3 Missense_Mutation p.E508Q 0.13 tolerated(0.32) benign(0.098) TCGA-IG-A5B8-01 5 131657980 131657980 C T SLC22A4 Silent p.F252F 0.22 TCGA-IG-A5B8-01 5 133915701 133915701 C A JADE2 3'UTR 0.12 TCGA-IG-A5B8-01 5 134343646 134343646 G A CATSPER3 Splice_Site p.X165_splice 0.25 TCGA-IG-A5B8-01 5 137761139 137761139 G C KDM3B Missense_Mutation p.E1427Q 0.27 tolerated(0.08) possibly_damaging(0.677) TCGA-IG-A5B8-01 5 137761147 137761147 G A KDM3B Nonsense_Mutation p.W1429* 0.28 TCGA-IG-A5B8-01 5 138979986 138979986 A T UBE2D2 Silent p.P18P 0.20 TCGA-IG-A5B8-01 5 140307392 140307392 C G PCDHAC1 Silent p.L305L 0.37 TCGA-IG-A5B8-01 5 140431922 140431922 C G PCDHB1 Silent p.L289L 0.29 TCGA-IG-A5B8-01 5 143853449 143853449 G C KCTD16 Silent p.L353L 0.16 TCGA-IG-A5B8-01 5 156565835 156565835 T A MED7 Missense_Mutation p.H203L 0.31 tolerated(0.34) benign(0) TCGA-IG-A5B8-01 5 161524723 161524723 G A GABRG2 Missense_Mutation p.R136Q 0.07 tolerated(0.09) probably_damaging(0.997) TCGA-IG-A5B8-01 5 169097556 169097556 C G DOCK2 Missense_Mutation p.P60R 0.22 deleterious(0) probably_damaging(0.996) TCGA-IG-A5B8-01 5 172550174 172550174 G C CREBRF Missense_Mutation p.Q591H 0.18 deleterious(0.02) benign(0.382) TCGA-IG-A5B8-01 5 173386077 173386077 C G CPEB4 3'UTR 0.18 TCGA-IG-A5B8-01 5 176951721 176951721 G C FAM193B Silent p.L587L 0.23 TCGA-IG-A5B8-01 5 35068920 35068920 C G PRLR Missense_Mutation p.C249S 0.10 deleterious(0.02) benign(0.209) TCGA-IG-A5B8-01 5 35779216 35779216 C T SPEF2 Intron 0.11 TCGA-IG-A5B8-01 5 38438418 38438418 C T EGFLAM Silent p.F775F 0.18 TCGA-IG-A5B8-01 5 40947882 40947882 C G C7 Missense_Mutation p.S306C 0.12 deleterious(0.01) probably_damaging(0.992) TCGA-IG-A5B8-01 5 41045946 41045946 C G MROH2B Missense_Mutation p.E580Q 0.21 deleterious(0.02) benign(0.138) TCGA-IG-A5B8-01 5 42718722 42718722 G A GHR Silent p.E371E 0.09 TCGA-IG-A5B8-01 5 49694982 49694982 C A EMB 3'UTR 0.34 TCGA-IG-A5B8-01 5 49963923 49963923 C G PARP8 Missense_Mutation p.S37C 0.32 deleterious_low_confidence(0.01) benign(0.28) TCGA-IG-A5B8-01 5 5464326 5464326 G C KIAA0947 Missense_Mutation p.E1627Q 0.33 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 5 5465301 5465301 G C KIAA0947 Missense_Mutation p.E1952Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-IG-A5B8-01 5 55250687 55250687 G C IL6ST Missense_Mutation p.I467M 0.20 tolerated(0.08) benign(0.07) TCGA-IG-A5B8-01 5 58334993 58334993 C T PDE4D Intron 0.33 TCGA-IG-A5B8-01 5 72161504 72161504 A G TNPO1 Missense_Mutation p.I182V 0.21 tolerated(0.64) benign(0) TCGA-IG-A5B8-01 5 83680212 83680212 G T EDIL3 5'UTR 0.30 TCGA-IG-A5B8-01 5 89755780 89755780 G A MBLAC2 3'UTR 0.23 TCGA-IG-A5B8-01 6 10876178 10876178 C T GCM2 Silent p.K176K 0.36 TCGA-IG-A5B8-01 6 125623117 125623117 G C HDDC2 5'UTR 0.17 TCGA-IG-A5B8-01 6 129724965 129724965 G C LAMA2 Splice_Site p.X1909_splice 0.13 TCGA-IG-A5B8-01 6 138649248 138649248 G C KIAA1244 Missense_Mutation p.D1698H 0.50 deleterious(0.02) possibly_damaging(0.823) TCGA-IG-A5B8-01 6 146268631 146268631 C T SHPRH Missense_Mutation p.E404K 0.26 tolerated_low_confidence(0.07) probably_damaging(0.979) TCGA-IG-A5B8-01 6 25093789 25093789 C G CMAHP RNA 0.30 TCGA-IG-A5B8-01 6 25495435 25495435 G T LRRC16A Missense_Mutation p.E439D 0.25 tolerated(0.46) benign(0.109) TCGA-IG-A5B8-01 6 26205238 26205238 C T HIST1H4E 3'UTR 0.15 TCGA-IG-A5B8-01 6 26225602 26225602 G C HIST1H3E Missense_Mutation p.E74Q 0.15 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-IG-A5B8-01 6 29394838 29394838 C T OR11A1 Missense_Mutation p.R194K 0.22 tolerated(0.15) benign(0.026) TCGA-IG-A5B8-01 6 30128405 30128405 G A TRIM10 Silent p.N77N 0.10 TCGA-IG-A5B8-01 6 31847870 31847870 G C EHMT2 Silent p.V1208V 0.28 TCGA-IG-A5B8-01 6 32023938 32023938 C G TNXB Missense_Mutation p.E2719D 0.28 probably_damaging(0.979) TCGA-IG-A5B8-01 6 32713702 32713702 G A HLA-DQA2 Missense_Mutation p.E156K 0.18 tolerated(0.13) benign(0.245) TCGA-IG-A5B8-01 6 33408515 33408515 G A SYNGAP1 Silent p.P562P 0.18 TCGA-IG-A5B8-01 6 33653581 33653581 G C ITPR3 Missense_Mutation p.E1882Q 0.25 deleterious(0.01) probably_damaging(0.984) TCGA-IG-A5B8-01 6 36867365 36867365 C G C6orf89 Missense_Mutation p.Q56E 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-IG-A5B8-01 6 41710116 41710116 G C PGC Missense_Mutation p.L187V 0.40 tolerated(0.19) benign(0.043) TCGA-IG-A5B8-01 6 41744689 41744689 C T FRS3 Missense_Mutation p.V13I 0.14 tolerated(1) benign(0) TCGA-IG-A5B8-01 6 42988714 42988714 C T KLHDC3 3'UTR 0.07 TCGA-IG-A5B8-01 6 46607323 46607323 G C CYP39A1 Silent p.L132L 0.24 TCGA-IG-A5B8-01 6 52132674 52132674 C G MCM3 Missense_Mutation p.Q732H 0.26 tolerated(0.15) benign(0.332) TCGA-IG-A5B8-01 6 71236164 71236164 G A FAM135A Missense_Mutation p.R1126K 0.14 tolerated(0.38) benign(0.001) TCGA-IG-A5B8-01 6 84371233 84371233 C G SNAP91 Missense_Mutation p.R147T 0.25 deleterious(0) unknown(0) TCGA-IG-A5B8-01 6 87966128 87966128 T A ZNF292 Silent p.T927T 0.26 TCGA-IG-A5B8-01 6 87971218 87971218 A G ZNF292 Missense_Mutation p.H2624R 0.31 tolerated(0.26) benign(0.045) TCGA-IG-A5B8-01 6 96054102 96054102 G C MANEA Missense_Mutation p.E404Q 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-IG-A5B8-01 7 103175830 103175830 G C RELN Missense_Mutation p.R2428G 0.18 tolerated(0.06) benign(0.126) TCGA-IG-A5B8-01 7 107334901 107334901 G A SLC26A4 Silent p.G439G 0.19 TCGA-IG-A5B8-01 7 117227862 117227862 C G CFTR Missense_Mutation p.Q552E 0.19 deleterious(0) probably_damaging(0.971) TCGA-IG-A5B8-01 7 128040880 128040880 C T IMPDH1 Silent p.R190R 0.36 TCGA-IG-A5B8-01 7 148701243 148701243 G A PDIA4 Silent p.V527V 0.15 TCGA-IG-A5B8-01 7 150768592 150768592 G A SLC4A2 Silent p.L697L 0.14 TCGA-IG-A5B8-01 7 150912737 150912737 C G ABCF2 Missense_Mutation p.E495Q 0.15 tolerated(0.37) benign(0.259) TCGA-IG-A5B8-01 7 151807728 151807728 C T GALNT11 Missense_Mutation p.R360W 0.26 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 7 157333462 157333462 C T PTPRN2 Silent p.A998A 0.29 TCGA-IG-A5B8-01 7 26231674 26231674 C G HNRNPA2B1 3'UTR 0.20 TCGA-IG-A5B8-01 7 34192911 34192911 G A BMPER 3'UTR 0.08 TCGA-IG-A5B8-01 7 44147454 44147454 A - AEBP1 Frame_Shift_Del p.R263Gfs*29 0.30 TCGA-IG-A5B8-01 7 4810620 4810620 G A FOXK1 3'UTR 0.18 TCGA-IG-A5B8-01 7 71177154 71177154 A G WBSCR17 3'UTR 0.32 TCGA-IG-A5B8-01 7 76891437 76891437 G A CCDC146 Splice_Site p.X329_splice 0.23 TCGA-IG-A5B8-01 7 82997166 82997166 C A SEMA3E Missense_Mutation p.E688D 0.27 tolerated(0.38) benign(0.001) TCGA-IG-A5B8-01 7 8473973 8473973 G A NXPH1 5'UTR 0.32 TCGA-IG-A5B8-01 7 87258250 87258250 C T RUNDC3B Silent p.I37I 0.36 TCGA-IG-A5B8-01 7 91752604 91752604 C T CYP51A1 Missense_Mutation p.E306K 0.14 deleterious(0.01) probably_damaging(0.93) TCGA-IG-A5B8-01 7 92844738 92844738 C T HEPACAM2 Missense_Mutation p.D231N 0.11 tolerated(0.11) benign(0.031) TCGA-IG-A5B8-01 7 94296325 94296325 G A PEG10 3'UTR 0.26 TCGA-IG-A5B8-01 7 98601877 98601877 G C TRRAP Missense_Mutation p.W3444C 0.24 probably_damaging(0.999) TCGA-IG-A5B8-01 7 98601974 98601974 G A TRRAP Missense_Mutation p.E3477K 0.30 probably_damaging(0.926) TCGA-IG-A5B8-01 8 100791077 100791077 G C VPS13B Missense_Mutation p.E2558Q 0.17 deleterious(0) benign(0.403) TCGA-IG-A5B8-01 8 110374853 110374853 T A PKHD1L1 Missense_Mutation p.L15Q 0.26 deleterious(0.01) possibly_damaging(0.902) TCGA-IG-A5B8-01 8 110408258 110408258 G C PKHD1L1 Missense_Mutation p.V272L 0.29 deleterious(0.04) benign(0.247) TCGA-IG-A5B8-01 8 110986468 110986468 G A KCNV1 Silent p.F50F 0.22 TCGA-IG-A5B8-01 8 11615867 11615867 G A GATA4 Silent p.K404K 0.30 TCGA-IG-A5B8-01 8 124357292 124357292 C G ATAD2 Missense_Mutation p.K850N 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-IG-A5B8-01 8 144358109 144358109 C G GLI4 Missense_Mutation p.S89C 0.18 tolerated(0.06) benign(0.125) TCGA-IG-A5B8-01 8 144358344 144358344 C G GLI4 Silent p.V167V 0.16 TCGA-IG-A5B8-01 8 144997022 144997022 C T PLEC Missense_Mutation p.E2496K 0.14 possibly_damaging(0.688) TCGA-IG-A5B8-01 8 145637923 145637923 C T SLC39A4 Silent p.%3D 0.07 TCGA-IG-A5B8-01 8 145731375 145731375 C T GPT Intron 0.29 TCGA-IG-A5B8-01 8 146076001 146076001 C G COMMD5 3'UTR 0.06 TCGA-IG-A5B8-01 8 22056861 22056861 C G BMP1 Intron 0.38 TCGA-IG-A5B8-01 8 22477413 22477413 A G CCAR2 3'UTR 0.17 TCGA-IG-A5B8-01 8 23702448 23702448 G C STC1 Silent p.L193L 0.36 TCGA-IG-A5B8-01 8 38033964 38033964 C G LSM1 5'UTR 0.38 TCGA-IG-A5B8-01 8 42033373 42033373 T C PLAT 3'UTR 0.27 TCGA-IG-A5B8-01 8 55538983 55538983 G C RP1 Missense_Mutation p.L847F 0.35 deleterious(0.03) possibly_damaging(0.753) TCGA-IG-A5B8-01 8 86195843 86195843 G A CA13 3'UTR 0.28 TCGA-IG-A5B8-01 8 89198796 89198796 C T MMP16 Missense_Mutation p.D105N 0.17 deleterious(0) possibly_damaging(0.849) TCGA-IG-A5B8-01 8 9413446 9413446 G A TNKS 5'UTR 0.17 TCGA-IG-A5B8-01 8 99963845 99963845 C T OSR2 Silent p.S285S 0.35 TCGA-IG-A5B8-01 9 100840628 100840628 C T NANS Missense_Mutation p.S201L 0.56 tolerated(0.33) benign(0.005) TCGA-IG-A5B8-01 9 107379583 107379583 C T OR13C9 Silent p.K301K 0.36 TCGA-IG-A5B8-01 9 135073473 135073473 T C NTNG2 Missense_Mutation p.W112R 0.44 deleterious(0) probably_damaging(1) TCGA-IG-A5B8-01 9 135787825 135787825 G T TSC1 Missense_Mutation p.H253N 0.54 deleterious(0.01) possibly_damaging(0.589) TCGA-IG-A5B8-01 9 139327500 139327500 C T INPP5E Missense_Mutation p.R396H 0.19 deleterious(0) probably_damaging(0.997) TCGA-IG-A5B8-01 X 117583140 117583140 G C WDR44 3'UTR 0.50 TCGA-IG-A5B8-01 X 117758549 117758549 A G DOCK11 Silent p.L1173L 0.52 TCGA-IG-A5B8-01 X 131761250 131761250 C G HS6ST2 3'Flank 0.47 TCGA-IG-A5B8-01 X 133561862 133561862 A T PHF6 3'UTR 0.40 TCGA-IG-A5B8-01 X 75397537 75397537 G A PBDC1 Missense_Mutation p.E166K 0.48 tolerated(0.1) benign(0.332) TCGA-IG-A5S3-01 10 14884177 14884177 G A HSPA14 Intron 0.60 TCGA-IG-A5S3-01 10 70694630 70694630 C G DDX50 Missense_Mutation p.Q493E 0.42 tolerated(0.12) benign(0.011) TCGA-IG-A5S3-01 10 72498630 72498630 G A ADAMTS14 Silent p.S547S 0.20 TCGA-IG-A5S3-01 10 75197677 75197680 GAAG AAA PPP3CB 3'UTR 0.33 TCGA-IG-A5S3-01 11 106647265 106647265 T C GUCY1A2 Missense_Mutation p.H579R 0.24 deleterious(0) possibly_damaging(0.792) TCGA-IG-A5S3-01 11 123900990 123900990 G A OR10G8 Missense_Mutation p.V221I 0.31 tolerated(0.3) benign(0.05) TCGA-IG-A5S3-01 11 17416732 17416732 C A ABCC8 Silent p.L1466L 0.23 TCGA-IG-A5S3-01 11 20385843 20385843 C T HTATIP2 Silent p.S54S 0.20 TCGA-IG-A5S3-01 11 4936269 4936269 C T OR51G2 Missense_Mutation p.V209I 0.19 tolerated(0.51) benign(0.021) TCGA-IG-A5S3-01 11 5529807 5529807 C A UBQLN3 Missense_Mutation p.D328Y 0.32 deleterious(0.01) benign(0.149) TCGA-IG-A5S3-01 11 64067761 64067761 C T KCNK4 3'Flank 0.21 TCGA-IG-A5S3-01 11 66103267 66103267 G A RIN1 Silent p.F116F 0.21 TCGA-IG-A5S3-01 11 66191454 66191454 G A NPAS4 Missense_Mutation p.A365T 0.36 deleterious(0.01) benign(0) TCGA-IG-A5S3-01 12 108013823 108013823 G A BTBD11 Missense_Mutation p.R838H 0.11 deleterious(0.03) probably_damaging(0.964) TCGA-IG-A5S3-01 12 14706313 14706313 G C PLBD1 Missense_Mutation p.A50G 0.39 tolerated(0.26) benign(0.257) TCGA-IG-A5S3-01 12 21457384 21457384 A G SLCO1A2 Missense_Mutation p.F189S 0.23 tolerated(0.72) benign(0) TCGA-IG-A5S3-01 12 21918874 21918874 C T KCNJ8 Missense_Mutation p.C353Y 0.54 tolerated(0.09) probably_damaging(0.996) TCGA-IG-A5S3-01 12 2800324 2800324 G A CACNA1C Missense_Mutation p.E2174K 0.25 deleterious_low_confidence(0) benign(0.137) TCGA-IG-A5S3-01 12 4708255 4708255 C G DYRK4 Missense_Mutation p.R208G 0.07 deleterious(0.01) possibly_damaging(0.537) TCGA-IG-A5S3-01 12 47159383 47159383 G A SLC38A4 3'UTR 0.33 TCGA-IG-A5S3-01 12 53668781 53668781 G T ESPL1 Nonsense_Mutation p.E563* 0.23 TCGA-IG-A5S3-01 12 72680484 72680484 C T TRHDE Missense_Mutation p.S268L 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-IG-A5S3-01 12 8051567 8051567 C A NANOGP1 RNA 0.10 TCGA-IG-A5S3-01 12 96384204 96384204 C G HAL Missense_Mutation p.W274C 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-IG-A5S3-01 12 96588369 96588369 G T ELK3 5'UTR 0.27 TCGA-IG-A5S3-01 13 114541097 114541097 G A GAS6 Silent p.F178F 0.29 TCGA-IG-A5S3-01 13 95114434 95114434 G A DCT Silent p.D291D 0.39 TCGA-IG-A5S3-01 14 105269410 105269410 G T ZBTB42 3'UTR 0.35 TCGA-IG-A5S3-01 15 42058227 42058227 A C MGA Silent p.P2649P 0.34 TCGA-IG-A5S3-01 15 83932769 83932769 G A BNC1 Missense_Mutation p.R412W 0.35 deleterious(0) probably_damaging(0.999) TCGA-IG-A5S3-01 16 21270033 21270033 A G CRYM 3'UTR 0.31 TCGA-IG-A5S3-01 16 66511471 66511471 G A BEAN1 Missense_Mutation p.E100K 0.26 deleterious(0.01) benign(0.021) TCGA-IG-A5S3-01 16 67440127 67440127 G A ZDHHC1 Silent p.H76H 0.30 TCGA-IG-A5S3-01 16 67866357 67866357 C A CENPT Splice_Site p.X67_splice 0.27 TCGA-IG-A5S3-01 16 89783106 89783106 C T VPS9D1 Intron 0.18 TCGA-IG-A5S3-01 17 39657566 39657566 G A KRT13 Missense_Mutation p.S440F 0.07 tolerated(0.05) benign(0.009) TCGA-IG-A5S3-01 17 61903427 61903427 G - FTSJ3 Frame_Shift_Del p.R97Vfs*6 0.21 TCGA-IG-A5S3-01 17 67538379 67538379 G A MAP2K6 3'UTR 0.15 TCGA-IG-A5S3-01 17 7577105 7577105 G T TP53 Missense_Mutation p.P278H 0.81 deleterious(0) probably_damaging(1) TCGA-IG-A5S3-01 18 65181701 65181701 C G DSEL Missense_Mutation p.D59H 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.621) TCGA-IG-A5S3-01 19 11759238 11759238 G A ZNF833P RNA 0.55 TCGA-IG-A5S3-01 19 18280366 18280366 C T PIK3R2 3'UTR 0.18 TCGA-IG-A5S3-01 19 36111189 36111189 C A HAUS5 Silent p.L537L 0.39 TCGA-IG-A5S3-01 19 38039849 38039849 G A ZNF540 5'Flank 0.05 TCGA-IG-A5S3-01 19 49574060 49574060 C T KCNA7 Missense_Mutation p.V211M 0.36 tolerated(0.26) benign(0.037) TCGA-IG-A5S3-01 19 50367621 50367621 G A PNKP Missense_Mutation p.R180C 0.15 deleterious(0) possibly_damaging(0.887) TCGA-IG-A5S3-01 1 1391664 1391664 C A ATAD3C Silent p.P208P 0.30 TCGA-IG-A5S3-01 1 157648385 157648385 C T FCRL3 3'UTR 0.30 TCGA-IG-A5S3-01 1 167944174 167944174 T A DCAF6 Missense_Mutation p.I120K 0.04 deleterious(0) probably_damaging(0.996) TCGA-IG-A5S3-01 1 181693605 181693605 G T CACNA1E Splice_Site p.X692_splice 0.48 TCGA-IG-A5S3-01 1 181727944 181727944 C T CACNA1E Silent p.I1515I 0.45 TCGA-IG-A5S3-01 1 201434889 201434902 CCTGGGTACCAGGC - PHLDA3 3'UTR 0.12 TCGA-IG-A5S3-01 1 22169271 22169271 G C HSPG2 Missense_Mutation p.R2968G 0.18 benign(0.326) TCGA-IG-A5S3-01 1 223408377 223408377 G A SUSD4 Intron 0.68 TCGA-IG-A5S3-01 1 26551855 26551855 G A RP11-231P20.2 Intron 0.58 TCGA-IG-A5S3-01 20 17465182 17465182 G T PCSK2 3'UTR 0.31 TCGA-IG-A5S3-01 20 3672113 3672113 G A SIGLEC1 Missense_Mutation p.H1489Y 0.31 tolerated(0.61) benign(0.008) TCGA-IG-A5S3-01 20 48098775 48098775 G A KCNB1 Silent p.N81N 0.51 TCGA-IG-A5S3-01 20 57766999 57766999 G A ZNF831 Missense_Mutation p.A309T 0.12 tolerated(0.1) benign(0.006) TCGA-IG-A5S3-01 20 61472147 61472147 C T COL9A3 3'UTR 0.20 TCGA-IG-A5S3-01 21 31744251 31744251 G A KRTAP13-2 Missense_Mutation p.T94M 0.32 tolerated(0.06) benign(0.223) TCGA-IG-A5S3-01 21 34932448 34932448 G A SON Intron 0.11 TCGA-IG-A5S3-01 22 43617211 43617211 C T SCUBE1 Missense_Mutation p.R506Q 0.44 tolerated(0.48) benign(0.001) TCGA-IG-A5S3-01 22 50927860 50927860 C A MIOX Missense_Mutation p.F207L 0.33 tolerated(0.63) benign(0.181) TCGA-IG-A5S3-01 2 119727700 119727700 G T MARCO Silent p.L70L 0.27 TCGA-IG-A5S3-01 2 166847062 166847062 C A SCN1A 3'UTR 0.53 TCGA-IG-A5S3-01 2 207452839 207452839 A G ADAM23 Missense_Mutation p.K605E 0.30 deleterious(0) possibly_damaging(0.719) TCGA-IG-A5S3-01 2 227920748 227920748 G A COL4A4 Missense_Mutation p.R877W 0.32 unknown(0) TCGA-IG-A5S3-01 2 238006331 238006331 C T COPS8 Silent p.P192P 0.31 TCGA-IG-A5S3-01 2 27529352 27529352 C T TRIM54 Silent p.A382A 0.24 TCGA-IG-A5S3-01 2 33809105 33809106 TT - FAM98A 3'UTR 0.12 TCGA-IG-A5S3-01 2 46413592 46413592 G A PRKCE 3'UTR 0.11 TCGA-IG-A5S3-01 2 88474919 88474919 A G THNSL2 Silent p.G190G 0.19 TCGA-IG-A5S3-01 3 194080470 194080470 G A LRRC15 Missense_Mutation p.R441C 0.23 deleterious(0) possibly_damaging(0.847) TCGA-IG-A5S3-01 3 88192469 88192469 C T ZNF654 3'UTR 0.28 TCGA-IG-A5S3-01 4 38775539 38775539 T A TLR10 Missense_Mutation p.N558I 0.17 deleterious(0.04) benign(0.235) TCGA-IG-A5S3-01 4 41621228 41621228 G A LIMCH1 Missense_Mutation p.D236N 0.09 deleterious(0) probably_damaging(0.999) TCGA-IG-A5S3-01 4 647448 647448 C T PDE6B Intron 0.75 TCGA-IG-A5S3-01 5 111481669 111481669 C T EPB41L4A RNA 0.32 TCGA-IG-A5S3-01 5 131398418 131398418 G A IL3 Silent p.T131T 0.18 TCGA-IG-A5S3-01 5 13928260 13928260 C G DNAH5 Missense_Mutation p.V74L 0.17 benign(0.001) TCGA-IG-A5S3-01 5 140504087 140504087 C G PCDHB4 3'UTR 0.20 TCGA-IG-A5S3-01 5 150660711 150660711 G A SLC36A3 Silent p.I377I 0.17 TCGA-IG-A5S3-01 5 169310673 169310673 G T FAM196B Missense_Mutation p.P77H 0.22 deleterious(0.03) possibly_damaging(0.875) TCGA-IG-A5S3-01 5 179071806 179071806 G A C5orf60 Silent p.S72S 0.19 TCGA-IG-A5S3-01 5 24593471 24593471 C A CDH10 Missense_Mutation p.R43S 0.23 tolerated(0.74) benign(0.001) TCGA-IG-A5S3-01 5 26881567 26881567 C G CDH9 Missense_Mutation p.R683T 0.23 tolerated(0.5) possibly_damaging(0.721) TCGA-IG-A5S3-01 5 32090983 32090983 G A PDZD2 Missense_Mutation p.V2477M 0.20 tolerated(0.06) possibly_damaging(0.66) TCGA-IG-A5S3-01 5 57913496 57913496 C T RAB3C Silent p.Y17Y 0.44 TCGA-IG-A5S3-01 6 117252838 117252838 G T RFX6 3'UTR 0.40 TCGA-IG-A5S3-01 6 161139850 161139850 C T PLG Missense_Mutation p.T359M 0.29 tolerated(0.17) possibly_damaging(0.466) TCGA-IG-A5S3-01 6 26017957 26017968 ACATGGTGACTA - HIST1H1A Missense_Mutation 0.27 TCGA-IG-A5S3-01 6 35837431 35837434 AGAG - SRPK1 Frame_Shift_Del p.S413Vfs*4 0.32 TCGA-IG-A5S3-01 6 66005908 66005908 G A EYS Missense_Mutation p.S624L 0.24 tolerated(1) benign(0) TCGA-IG-A5S3-01 7 130021558 130021558 C G CPA1 Missense_Mutation p.L79V 0.30 deleterious(0) probably_damaging(1) TCGA-IG-A5S3-01 7 150095050 150095050 G T ZNF775 Missense_Mutation p.R494L 0.57 deleterious(0) probably_damaging(0.999) TCGA-IG-A5S3-01 7 55273280 55273280 G A EGFR Silent p.A1201A 0.24 TCGA-IG-A5S3-01 7 66461866 66461866 C T TYW1 5'UTR 0.21 TCGA-IG-A5S3-01 7 88962883 88962883 G A ZNF804B Missense_Mutation p.R196H 0.48 tolerated(0.68) benign(0.022) TCGA-IG-A5S3-01 7 96649859 96649859 C T DLX5 3'UTR 0.17 TCGA-IG-A5S3-01 8 124027675 124027675 G A DERL1 3'UTR 0.26 TCGA-IG-A5S3-01 8 24193159 24193159 G A ADAM28 Intron 0.64 TCGA-IG-A5S3-01 8 2820079 2820079 G A CSMD1 Silent p.F3179F 0.26 TCGA-IG-A5S3-01 8 76471212 76471212 T C HNF4G Missense_Mutation p.F345L 0.18 tolerated(0.38) benign(0.007) TCGA-IG-A5S3-01 8 81552479 81552480 TA C ZNF704 3'UTR 0.25 TCGA-IG-A5S3-01 9 139413231 139413231 T - NOTCH1 Frame_Shift_Del p.N304Mfs*327 0.59 TCGA-IG-A5S3-01 9 18928750 18928750 T A FAM154A Missense_Mutation p.Q242L 0.06 tolerated(0.31) benign(0.158) TCGA-IG-A5S3-01 9 5922719 5922719 G A KIAA2026 Missense_Mutation p.P1093S 0.37 tolerated(0.28) benign(0.003) TCGA-IG-A5S3-01 9 8486299 8486299 G T PTPRD Missense_Mutation p.L840I 0.30 tolerated(0.11) probably_damaging(0.987) TCGA-IG-A5S3-01 X 100882700 100882700 C T ARMCX3 3'UTR 0.25 TCGA-IG-A5S3-01 X 107929290 107929290 C T COL4A5 Missense_Mutation p.R1416C 0.21 probably_damaging(0.993) TCGA-IG-A5S3-01 X 24075597 24075597 C T EIF2S3 Missense_Mutation p.H65Y 0.34 tolerated(0.27) benign(0.013) TCGA-IG-A5S3-01 X 41332755 41332755 G A NYX Missense_Mutation p.G17S 0.33 tolerated(0.63) benign(0.001) TCGA-IG-A5S3-01 X 48779773 48779773 G A OTUD5 3'UTR 0.20 TCGA-IG-A5S3-01 X 69454560 69454560 G A AWAT1 Silent p.K5K 0.09 TCGA-IG-A625-01 10 105358613 105358613 T C SH3PXD2A 3'UTR 0.33 TCGA-IG-A625-01 10 16553247 16553247 T G PTER Missense_Mutation p.F348V 0.56 deleterious(0) probably_damaging(0.926) TCGA-IG-A625-01 10 46999668 46999668 C T GPRIN2 Missense_Mutation p.A263V 0.32 deleterious(0) possibly_damaging(0.835) TCGA-IG-A625-01 10 5494811 5494811 A - NET1 Intron 0.15 TCGA-IG-A625-01 11 134188557 134188557 A G GLB1L3 Silent p.G604G 0.34 TCGA-IG-A625-01 11 45891258 45891258 A G CRY2 Missense_Mutation p.I383V 0.34 deleterious(0.03) benign(0.424) TCGA-IG-A625-01 11 61583950 61583950 G C FADS1 Intron 0.26 TCGA-IG-A625-01 11 73068098 73068098 C T ARHGEF17 Missense_Mutation p.S1307F 0.24 deleterious(0.01) probably_damaging(0.983) TCGA-IG-A625-01 11 93466281 93466281 T A KIAA1731 3'Flank 0.43 TCGA-IG-A625-01 12 6153592 6153592 G T VWF Silent p.P769P 0.69 TCGA-IG-A625-01 12 88910245 88910245 C T KITLG Missense_Mutation p.S129N 0.33 tolerated(0.64) benign(0) TCGA-IG-A625-01 13 41767331 41767331 G A KBTBD7 Missense_Mutation p.P355S 0.14 tolerated(0.27) benign(0.407) TCGA-IG-A625-01 16 18532148 18532148 C T NOMO2 Missense_Mutation p.V738M 0.17 tolerated(0.12) benign(0.054) TCGA-IG-A625-01 17 42927927 42927927 A T EFTUD2 3'UTR 0.58 TCGA-IG-A625-01 17 62022996 62022996 C T SCN4A Silent p.V1148V 0.72 TCGA-IG-A625-01 17 75210142 75210142 G A SEC14L1 Intron 0.48 TCGA-IG-A625-01 17 7578176 7578176 C A TP53 Splice_Site p.X224_splice 0.78 TCGA-IG-A625-01 18 18530807 18530807 T C ROCK1 3'UTR 0.57 TCGA-IG-A625-01 18 3456685 3456685 A G TGIF1 Intron 0.33 TCGA-IG-A625-01 18 5291775 5291775 A C ZBTB14 Nonsense_Mutation p.Y144* 0.21 TCGA-IG-A625-01 18 8793003 8793004 - C SOGA2 Frame_Shift_Ins p.V635Rfs*4 0.34 TCGA-IG-A625-01 19 12780418 12780418 G T WDR83OS 5'UTR 0.38 TCGA-IG-A625-01 19 29698442 29698442 G C UQCRFS1 3'UTR 0.08 TCGA-IG-A625-01 19 4054661 4054661 C T ZBTB7A Silent p.A190A 0.40 TCGA-IG-A625-01 19 51379818 51379818 G A KLK2 Silent p.P99P 0.29 TCGA-IG-A625-01 19 56369885 56369885 G A NLRP4 Missense_Mutation p.V376I 0.14 tolerated(1) benign(0) TCGA-IG-A625-01 19 57967427 57967427 T A VN1R1 Missense_Mutation p.N143I 0.18 deleterious(0) probably_damaging(0.932) TCGA-IG-A625-01 19 8587367 8587367 C G MYO1F Missense_Mutation p.Q1038H 0.37 tolerated(0.14) benign(0.195) TCGA-IG-A625-01 1 110135566 110135566 T C GNAI3 3'UTR 0.46 TCGA-IG-A625-01 1 116932186 116932186 A T ATP1A1 Missense_Mutation p.I294F 0.22 deleterious(0.04) possibly_damaging(0.512) TCGA-IG-A625-01 1 145304458 145304458 A G NBPF10 Missense_Mutation p.K464R 0.18 possibly_damaging(0.745) TCGA-IG-A625-01 1 149914361 149914361 C T OTUD7B 3'UTR 0.64 TCGA-IG-A625-01 1 157805945 157805945 G A CD5L Missense_Mutation p.A19V 0.26 tolerated(0.15) benign(0.035) TCGA-IG-A625-01 1 172579996 172579996 A T SUCO 3'UTR 0.18 TCGA-IG-A625-01 1 181059092 181059092 G C IER5 3'UTR 0.33 TCGA-IG-A625-01 1 203445038 203445038 G T PRELP 5'UTR 0.41 TCGA-IG-A625-01 1 53715213 53715214 - AA LRP8 Frame_Shift_Ins p.D898Lfs*59 0.30 TCGA-IG-A625-01 1 53927253 53927253 C T DMRTB1 Missense_Mutation p.P229S 0.12 tolerated(0.14) benign(0.147) TCGA-IG-A625-01 1 74492493 74492493 T C LRRIQ3 3'UTR 0.41 TCGA-IG-A625-01 20 3194687 3194687 G A ITPA Silent p.G82G 0.56 TCGA-IG-A625-01 22 22053852 22053852 C T YPEL1 3'UTR 0.33 TCGA-IG-A625-01 22 23115074 23115074 C T IGLV3-12 Missense_Mutation p.P116S 0.56 tolerated_low_confidence(0.14) benign(0.227) TCGA-IG-A625-01 22 23503091 23503091 C T RAB36 Silent p.S281S 0.10 TCGA-IG-A625-01 22 41077184 41077184 G A MCHR1 Missense_Mutation p.G174D 0.33 deleterious(0.02) probably_damaging(1) TCGA-IG-A625-01 2 111398882 111398882 G T BUB1 Splice_Site p.X928_splice 0.33 TCGA-IG-A625-01 2 128075818 128075818 T A MAP3K2 Missense_Mutation p.Y374F 0.42 deleterious(0.01) benign(0.349) TCGA-IG-A625-01 2 178098957 178098957 G A NFE2L2 Missense_Mutation p.L30F 0.25 deleterious(0) probably_damaging(1) TCGA-IG-A625-01 2 1795481 1795481 T A MYT1L 3'UTR 0.18 TCGA-IG-A625-01 2 179647001 179647001 G A TTN Silent p.G1106G 0.39 TCGA-IG-A625-01 2 192280957 192280957 G T MYO1B Missense_Mutation p.E1092D 0.39 tolerated(0.47) benign(0.014) TCGA-IG-A625-01 2 208687115 208687115 A C AC096772.6 RNA 0.38 TCGA-IG-A625-01 2 219270431 219270431 C T CTDSP1 3'UTR 0.38 TCGA-IG-A625-01 2 74072312 74072312 T C STAMBP Missense_Mutation p.F100L 0.41 tolerated(0.06) possibly_damaging(0.818) TCGA-IG-A625-01 2 85838860 85838860 T A C2orf68 Missense_Mutation p.R53W 0.38 deleterious(0) possibly_damaging(0.905) TCGA-IG-A625-01 3 100058768 100058768 A T NIT2 Missense_Mutation p.Y79F 0.47 tolerated(0.16) benign(0.057) TCGA-IG-A625-01 3 112643345 112643345 C T CD200R1 Missense_Mutation p.V306I 0.22 tolerated(0.17) benign(0.025) TCGA-IG-A625-01 3 121400679 121400679 A G GOLGB1 Silent p.L2910L 0.39 TCGA-IG-A625-01 3 127396675 127396675 G A ABTB1 Missense_Mutation p.D340N 0.24 tolerated(0.18) possibly_damaging(0.573) TCGA-IG-A625-01 3 136056729 136056729 T G STAG1 3'UTR 0.13 TCGA-IG-A625-01 3 1363504 1363504 A - CNTN6 Frame_Shift_Del p.Q311Hfs*42 0.41 TCGA-IG-A625-01 3 15090343 15090343 G T MRPS25 3'UTR 0.39 TCGA-IG-A625-01 3 172835311 172835311 C A SPATA16 Nonsense_Mutation p.E71* 0.22 TCGA-IG-A625-01 3 176742123 176742123 G C TBL1XR1 3'UTR 0.34 TCGA-IG-A625-01 3 197260430 197260430 C T BDH1 Missense_Mutation p.R29H 0.22 tolerated_low_confidence(0.17) benign(0) TCGA-IG-A625-01 3 86116280 86116281 - T CADM2 3'Flank 0.24 TCGA-IG-A625-01 4 11400816 11400816 G A HS3ST1 Missense_Mutation p.R272W 0.12 deleterious(0) probably_damaging(0.999) TCGA-IG-A625-01 4 155528020 155528020 G A FGG Silent p.G322G 0.55 TCGA-IG-A625-01 4 265855 265855 G T ZNF732 Missense_Mutation p.T264N 0.38 tolerated(0.78) probably_damaging(0.987) TCGA-IG-A625-01 4 3109067 3109078 GAATCAGTCCAG - HTT In_Frame_Del p.S223_E226del 0.23 TCGA-IG-A625-01 4 52781950 52781950 A G DCUN1D4 3'UTR 0.64 TCGA-IG-A625-01 5 171638319 171638319 C A UBTD2 3'UTR 0.41 TCGA-IG-A625-01 5 24491785 24491785 T C CDH10 Silent p.Q592Q 0.38 TCGA-IG-A625-01 5 41051168 41051168 G T MROH2B Missense_Mutation p.H419N 0.40 tolerated(0.47) benign(0.026) TCGA-IG-A625-01 5 58021834 58021834 A C RAB3C Silent p.T86T 0.54 TCGA-IG-A625-01 5 72385446 72385446 T C FCHO2 3'UTR 0.41 TCGA-IG-A625-01 6 111654555 111654555 T C REV3L Missense_Mutation p.M2566V 0.27 deleterious(0.01) benign(0.1) TCGA-IG-A625-01 6 146870631 146870632 - T RAB32 Frame_Shift_Ins p.Y95Lfs*13 0.28 TCGA-IG-A625-01 6 31610093 31610093 G C BAG6 Missense_Mutation p.P681A 0.30 tolerated(0.36) benign(0.025) TCGA-IG-A625-01 6 43469320 43469320 G A TJAP1 Missense_Mutation p.R62H 0.43 tolerated(0.12) probably_damaging(0.921) TCGA-IG-A625-01 6 76388386 76388386 A G SENP6 Missense_Mutation p.I646V 0.38 tolerated(1) benign(0.015) TCGA-IG-A625-01 6 87725923 87725923 C T HTR1E Missense_Mutation p.R291C 0.25 deleterious(0) probably_damaging(0.978) TCGA-IG-A625-01 6 90276680 90276680 C G ANKRD6 5'UTR 0.56 TCGA-IG-A625-01 6 96663432 96663432 A C FUT9 3'UTR 0.53 TCGA-IG-A625-01 7 100867224 100867224 G A ZNHIT1 Silent p.L150L 0.27 TCGA-IG-A625-01 7 111161482 111161482 C A IMMP2L Missense_Mutation p.V8L 0.38 tolerated(0.64) benign(0) TCGA-IG-A625-01 7 56147218 56147218 C T SUMF2 Intron 0.48 TCGA-IG-A625-01 7 63726569 63726570 - A ZNF679 Frame_Shift_Ins p.Y189Ifs*20 0.19 TCGA-IG-A625-01 7 88424264 88424264 C A C7orf62 5'UTR 0.40 TCGA-IG-A625-01 7 89984453 89984453 G A GTPBP10 Missense_Mutation p.G125S 0.06 deleterious(0) probably_damaging(0.998) TCGA-IG-A625-01 8 102555638 102555638 C T GRHL2 Missense_Mutation p.L64F 0.58 deleterious(0) probably_damaging(0.928) TCGA-IG-A625-01 8 107763910 107763910 A G OXR1 3'Flank 0.24 TCGA-IG-A625-01 8 126061249 126061249 T C KIAA0196 Missense_Mutation p.K793R 0.19 deleterious(0.01) probably_damaging(0.978) TCGA-IG-A625-01 8 24212065 24212065 G C ADAM28 3'UTR 0.44 TCGA-IG-A625-01 8 48733437 48733437 G A PRKDC Missense_Mutation p.S3059F 0.28 possibly_damaging(0.789) TCGA-IG-A625-01 8 64124416 64124417 - A YTHDF3 3'UTR 0.19 TCGA-IG-A625-01 9 139262253 139262253 C A CARD9 Missense_Mutation p.A369S 0.31 tolerated(0.75) benign(0.031) TCGA-IG-A625-01 9 140110968 140110968 A T NDOR1 3'UTR 0.44 TCGA-IG-A625-01 9 34089557 34089557 G T DCAF12 Silent p.I352I 0.30 TCGA-IG-A625-01 X 103432909 103432909 C G FAM199X Missense_Mutation p.N306K 0.71 tolerated_low_confidence(0.81) benign(0.282) TCGA-IG-A625-01 X 118893519 118893519 C T SOWAHD Missense_Mutation p.R297W 0.27 deleterious(0) probably_damaging(0.979) TCGA-IG-A625-01 X 44941834 44941834 A T KDM6A Missense_Mutation p.K1053I 0.78 deleterious(0) probably_damaging(0.99) TCGA-IG-A6QS-01 10 103920492 103920492 G T NOLC1 Missense_Mutation p.Q461H 0.28 deleterious_low_confidence(0) unknown(0) TCGA-IG-A6QS-01 10 106139943 106139943 C A CCDC147 Silent p.R444R 0.35 TCGA-IG-A6QS-01 10 74293533 74293533 G C MICU1 Missense_Mutation p.Q170E 0.27 deleterious(0.02) benign(0.206) TCGA-IG-A6QS-01 10 75196893 75196893 G C PPP3CB 3'UTR 0.36 TCGA-IG-A6QS-01 10 75863596 75863596 A G VCL Missense_Mutation p.I681V 0.39 tolerated(0.05) probably_damaging(0.986) TCGA-IG-A6QS-01 11 110070376 110070376 G A RDX Silent p.F592F 0.52 TCGA-IG-A6QS-01 11 4389279 4389279 C A OR52B4 Missense_Mutation p.A83S 0.25 deleterious(0.03) benign(0.072) TCGA-IG-A6QS-01 11 44165803 44165803 A G EXT2 Intron 0.36 TCGA-IG-A6QS-01 11 5775951 5775951 C G OR52N4 5'UTR 0.44 TCGA-IG-A6QS-01 11 6238828 6238828 C T FAM160A2 Missense_Mutation p.G677D 0.34 tolerated(0.11) benign(0.002) TCGA-IG-A6QS-01 11 68181296 68181296 C G LRP5 Silent p.L881L 0.25 TCGA-IG-A6QS-01 12 56080031 56080031 G A ITGA7 Intron 0.33 TCGA-IG-A6QS-01 13 72441024 72441024 C T DACH1 5'UTR 0.71 TCGA-IG-A6QS-01 13 96230262 96230262 T C CLDN10 Silent p.Y227Y 0.61 TCGA-IG-A6QS-01 14 19377922 19377922 C A OR11H12 Missense_Mutation p.A110D 0.19 deleterious(0.01) benign(0.084) TCGA-IG-A6QS-01 14 21840137 21840137 T C SUPT16H Missense_Mutation p.M76V 0.21 deleterious(0.01) benign(0.007) TCGA-IG-A6QS-01 14 22675763 22675763 G A TRAV34 Silent p.E25E 0.28 TCGA-IG-A6QS-01 14 50750625 50750625 C G L2HGDH Missense_Mutation p.E223Q 0.44 tolerated(0.25) benign(0.043) TCGA-IG-A6QS-01 14 71502860 71502860 T A PCNX Missense_Mutation p.F1285I 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-IG-A6QS-01 14 92472172 92472172 C T TRIP11 Missense_Mutation p.M716I 0.34 tolerated(0.27) benign(0.001) TCGA-IG-A6QS-01 15 23436943 23436943 A C GOLGA8EP Intron 0.25 TCGA-IG-A6QS-01 15 63054541 63054541 G A TLN2 Missense_Mutation p.R1617H 0.32 tolerated(0.06) benign(0.002) TCGA-IG-A6QS-01 15 66274821 66274821 C T MEGF11 Missense_Mutation p.D134N 0.19 deleterious(0.03) possibly_damaging(0.851) TCGA-IG-A6QS-01 15 86287894 86287894 G C AKAP13 Missense_Mutation p.E2814Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-IG-A6QS-01 16 30933892 30933892 T C FBXL19 5'Flank 0.24 TCGA-IG-A6QS-01 16 3350311 3350311 C T TIGD7 Missense_Mutation p.E102K 0.53 deleterious(0.03) probably_damaging(0.998) TCGA-IG-A6QS-01 16 57790343 57790343 G A KATNB1 Silent p.A598A 0.49 TCGA-IG-A6QS-01 16 71490014 71490014 C T ZNF23 5'UTR 0.39 TCGA-IG-A6QS-01 17 34313811 34313811 G A CCL14 Intron 0.41 TCGA-IG-A6QS-01 17 35445997 35445997 C T ACACA Missense_Mutation p.D2302N 0.33 tolerated(0.09) benign(0.005) TCGA-IG-A6QS-01 17 7322076 7322076 G C NLGN2 3'UTR 0.34 TCGA-IG-A6QS-01 17 7577556 7577556 C T TP53 Missense_Mutation p.C242Y 0.80 deleterious(0) probably_damaging(1) TCGA-IG-A6QS-01 17 80559543 80559543 C G FOXK2 3'UTR 0.42 TCGA-IG-A6QS-01 19 11097213 11097213 G A SMARCA4 Missense_Mutation p.G235D 0.29 benign(0.441) TCGA-IG-A6QS-01 19 12154831 12154831 G A ZNF878 Missense_Mutation p.S462F 0.31 tolerated(0.7) possibly_damaging(0.516) TCGA-IG-A6QS-01 19 14038817 14038817 G C CC2D1A Missense_Mutation p.D810H 0.31 deleterious(0) probably_damaging(1) TCGA-IG-A6QS-01 19 15658995 15658995 G T CYP4F22 Missense_Mutation p.V405F 0.27 tolerated(0.06) possibly_damaging(0.724) TCGA-IG-A6QS-01 19 46973274 46973274 C A PNMAL1 Missense_Mutation p.G340V 0.45 deleterious(0.05) probably_damaging(0.979) TCGA-IG-A6QS-01 19 54224390 54224390 G A MIR517B RNA 0.52 TCGA-IG-A6QS-01 19 7533811 7533811 G A ARHGEF18 Missense_Mutation p.R1006H 0.26 deleterious(0.05) benign(0.117) TCGA-IG-A6QS-01 1 149287545 149287545 G A RP11-403I13.8 RNA 0.21 TCGA-IG-A6QS-01 1 16475134 16475134 A G EPHA2 Missense_Mutation p.C188R 0.09 deleterious(0) probably_damaging(0.989) TCGA-IG-A6QS-01 1 207236027 207236027 C T PFKFB2 Missense_Mutation p.R92W 0.39 probably_damaging(0.991) TCGA-IG-A6QS-01 1 21268765 21268765 G A EIF4G3 Silent p.V244V 0.05 TCGA-IG-A6QS-01 1 247471852 247471852 T C ZNF496 Missense_Mutation p.R311G 0.28 tolerated(0.34) benign(0.006) TCGA-IG-A6QS-01 1 248004325 248004325 A G OR11L1 Silent p.L292L 0.22 TCGA-IG-A6QS-01 1 26161543 26161543 G T AUNIP Missense_Mutation p.P339T 0.46 tolerated(0.11) benign(0.02) TCGA-IG-A6QS-01 1 26161544 26161544 C T AUNIP Silent p.K338K 0.45 TCGA-IG-A6QS-01 1 45809288 45809288 G C TOE1 Missense_Mutation p.V483L 0.37 deleterious(0.02) benign(0.334) TCGA-IG-A6QS-01 1 62916244 62916244 A T USP1 Silent p.G650G 0.29 TCGA-IG-A6QS-01 1 85279550 85279550 G A LPAR3 Silent p.V347V 0.35 TCGA-IG-A6QS-01 20 5548199 5548199 T A GPCPD1 Missense_Mutation p.D386V 0.32 tolerated(0.16) benign(0.033) TCGA-IG-A6QS-01 21 30435686 30435686 T C CCT8 Missense_Mutation p.I310V 0.35 tolerated(0.05) benign(0.014) TCGA-IG-A6QS-01 21 34038771 34038771 T - SYNJ1 Frame_Shift_Del p.I681Sfs*17 0.29 TCGA-IG-A6QS-01 22 17525823 17525823 G T CECR7 RNA 0.35 TCGA-IG-A6QS-01 22 17525824 17525824 C T CECR7 RNA 0.35 TCGA-IG-A6QS-01 22 21538128 21538128 C T FAM230B RNA 0.05 TCGA-IG-A6QS-01 22 24025972 24025972 G T KB-1572G7.2 RNA 0.16 TCGA-IG-A6QS-01 22 41832910 41832910 T C TOB2 Missense_Mutation p.D147G 0.42 tolerated(0.39) benign(0) TCGA-IG-A6QS-01 2 103124546 103124546 G T SLC9A4 Missense_Mutation p.A403S 0.28 tolerated(0.22) benign(0.08) TCGA-IG-A6QS-01 2 15415836 15415836 T A NBAS Missense_Mutation p.K1832N 0.28 deleterious(0.01) benign(0.424) TCGA-IG-A6QS-01 2 160206655 160206655 G A BAZ2B Missense_Mutation p.A1476V 0.30 possibly_damaging(0.715) TCGA-IG-A6QS-01 2 163279955 163279955 C T KCNH7 Missense_Mutation p.R682Q 0.32 deleterious(0) probably_damaging(0.991) TCGA-IG-A6QS-01 2 167322493 167322493 C T SCN7A Silent p.L223L 0.30 TCGA-IG-A6QS-01 2 173894912 173894912 T G RAPGEF4 Missense_Mutation p.L860R 0.37 deleterious(0) probably_damaging(0.998) TCGA-IG-A6QS-01 2 17963086 17963086 T - GEN1 Frame_Shift_Del p.S870Qfs*6 0.23 TCGA-IG-A6QS-01 2 180810229 180810229 G A CWC22 Missense_Mutation p.T785I 0.35 tolerated_low_confidence(0.45) benign(0.001) TCGA-IG-A6QS-01 2 190561097 190561097 T C ANKAR Splice_Site p.X570_splice 0.34 TCGA-IG-A6QS-01 2 232458893 232458893 C G C2orf57 3'UTR 0.29 TCGA-IG-A6QS-01 2 39090566 39090566 T A DHX57 Missense_Mutation p.N107I 0.39 deleterious(0.04) probably_damaging(0.973) TCGA-IG-A6QS-01 2 60689333 60689333 A C BCL11A Missense_Mutation p.F238L 0.39 deleterious(0.01) probably_damaging(0.958) TCGA-IG-A6QS-01 2 70406666 70406666 G C C2orf42 Missense_Mutation p.S311C 0.32 tolerated(0.1) benign(0.298) TCGA-IG-A6QS-01 4 103718113 103718113 C G UBE2D3 3'Flank 0.41 TCGA-IG-A6QS-01 4 124323397 124323397 A G SPRY1 Silent p.E217E 0.34 TCGA-IG-A6QS-01 4 125587726 125587726 T C ANKRD50 3'UTR 0.43 TCGA-IG-A6QS-01 4 48994050 48994050 T C CWH43 Missense_Mutation p.S152P 0.06 tolerated(0.09) benign(0.025) TCGA-IG-A6QS-01 4 53463254 53463254 T C USP46 3'UTR 0.38 TCGA-IG-A6QS-01 5 34687772 34687772 T A RAI14 Intron 0.19 TCGA-IG-A6QS-01 5 78573804 78573804 C A JMY Silent p.A368A 0.71 TCGA-IG-A6QS-01 5 88119631 88119631 G A MEF2C 5'UTR 0.60 TCGA-IG-A6QS-01 6 28542921 28542921 T C SCAND3 Missense_Mutation p.S521G 0.23 tolerated_low_confidence(0.81) benign(0) TCGA-IG-A6QS-01 6 34494065 34494065 T C PACSIN1 5'UTR 0.08 TCGA-IG-A6QS-01 6 64791750 64791750 G T EYS Nonsense_Mutation p.Y2190* 0.38 TCGA-IG-A6QS-01 7 117365257 117365257 T C CTTNBP2 Missense_Mutation p.I1370M 0.49 deleterious(0) possibly_damaging(0.86) TCGA-IG-A6QS-01 7 4056935 4056935 C T SDK1 Silent p.A851A 0.39 TCGA-IG-A6QS-01 7 75609828 75609828 A G POR Intron 0.35 TCGA-IG-A6QS-01 7 82586167 82586167 C T PCLO Missense_Mutation p.D1368N 0.32 unknown(0) TCGA-IG-A6QS-01 8 144989495 144989495 C A PLEC 3'UTR 0.79 TCGA-IG-A6QS-01 8 17885213 17885213 A T PCM1 3'UTR 0.52 TCGA-IG-A6QS-01 8 25702068 25702068 C T EBF2 3'UTR 0.38 TCGA-IG-A6QS-01 8 26627783 26627783 G C ADRA1A Intron 0.63 TCGA-IG-A6QS-01 9 101594127 101594127 G A GALNT12 Missense_Mutation p.G269R 0.86 tolerated(0.74) probably_damaging(0.997) TCGA-IG-A6QS-01 9 116024271 116024271 C T SLC31A1 3'UTR 0.93 TCGA-IG-A6QS-01 9 121976407 121976407 G C BRINP1 Missense_Mutation p.L238V 0.21 deleterious(0) possibly_damaging(0.899) TCGA-IG-A6QS-01 9 69199991 69199991 C T FOXD4L6 3'UTR 0.72 TCGA-IG-A6QS-01 9 73240146 73240146 G A TRPM3 Silent p.R578R 0.34 TCGA-IG-A6QS-01 X 111078315 111078315 C G TRPC5 Missense_Mutation p.W577S 0.33 deleterious(0) probably_damaging(0.995) TCGA-IG-A6QS-01 X 50122993 50122993 G A DGKK RNA 0.59 TCGA-IG-A6QS-01 X 70523687 70523687 A T ITGB1BP2 Missense_Mutation p.I189F 0.85 tolerated(0.08) probably_damaging(0.951) TCGA-IG-A6QS-01 X 96396712 96396712 A G DIAPH2 Missense_Mutation p.I880V 0.84 deleterious(0.02) possibly_damaging(0.475) TCGA-IG-A6QS-01 X 99920277 99920277 T G SRPX2 Silent p.R190R 0.88 TCGA-IG-A7DP-01 13 60557938 60557938 C T DIAPH3 Missense_Mutation p.R482Q 0.06 deleterious(0) probably_damaging(0.987) TCGA-IG-A7DP-01 14 42360920 42360920 C T LRFN5 Missense_Mutation p.S618L 0.07 tolerated_low_confidence(0.21) benign(0.073) TCGA-IG-A7DP-01 17 4349367 4349367 C A SPNS3 Silent p.R143R 0.10 TCGA-IG-A7DP-01 19 15852908 15852908 C T OR10H3 Missense_Mutation p.R236W 0.13 deleterious(0) probably_damaging(0.993) TCGA-IG-A7DP-01 19 58578889 58578889 G A ZNF135 Missense_Mutation p.R370Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-IG-A7DP-01 20 60498710 60498710 C T CDH4 Silent p.L526L 0.20 TCGA-IG-A7DP-01 22 26422418 26422418 G A MYO18B Missense_Mutation p.E2160K 0.09 tolerated(0.61) benign(0.006) TCGA-IG-A7DP-01 4 153251886 153251886 T G FBXW7 Missense_Mutation p.K374Q 0.07 tolerated(0.09) benign(0.04) TCGA-IG-A7DP-01 9 131832593 131832593 C T FAM73B Missense_Mutation p.A548V 0.09 tolerated(0.09) benign(0.183) TCGA-IG-A7DP-01 9 39103847 39103847 G A CNTNAP3 Silent p.H810H 0.06 TCGA-IG-A7DP-01 X 147010265 147010265 C A FMR1 Missense_Mutation p.P120H 0.06 tolerated(0.08) probably_damaging(0.995) TCGA-IG-A8O2-01 10 117309029 117309029 G A ATRNL1 Missense_Mutation p.A1260T 0.16 tolerated(0.09) probably_damaging(0.998) TCGA-IG-A8O2-01 10 133784260 133784260 C T BNIP3 Missense_Mutation p.A141T 0.28 tolerated(0.65) benign(0.006) TCGA-IG-A8O2-01 10 33214829 33214829 G A ITGB1 Silent p.F252F 0.21 TCGA-IG-A8O2-01 10 38345270 38345270 C T ZNF33A Nonsense_Mutation p.Q740* 0.16 TCGA-IG-A8O2-01 10 871242 871242 G A LARP4B Missense_Mutation p.S416F 0.25 deleterious(0) possibly_damaging(0.862) TCGA-IG-A8O2-01 10 98469469 98469469 C T PIK3AP1 Silent p.P95P 0.20 TCGA-IG-A8O2-01 11 124761271 124761271 G A ROBO4 Silent p.L624L 0.48 TCGA-IG-A8O2-01 11 124875054 124875054 G C CCDC15 Missense_Mutation p.R786T 0.21 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 11 126137496 126137499 TTAA - SRPR Frame_Shift_Del p.L104Vfs*3 0.28 TCGA-IG-A8O2-01 11 130068269 130068269 A T ST14 Missense_Mutation p.D509V 0.46 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 11 14793560 14793560 A C PDE3B Intron 0.24 TCGA-IG-A8O2-01 11 43859885 43859885 G A HSD17B12 Silent p.L185L 0.24 TCGA-IG-A8O2-01 11 55371598 55371598 G A OR4C11 Silent p.L84L 0.78 TCGA-IG-A8O2-01 11 57117341 57117341 C T P2RX3 Missense_Mutation p.A225V 0.57 deleterious(0.01) possibly_damaging(0.884) TCGA-IG-A8O2-01 11 59245409 59245409 C T OR4D10 Silent p.C169C 0.51 TCGA-IG-A8O2-01 11 59807875 59807875 G A OOSP2 5'UTR 0.31 TCGA-IG-A8O2-01 11 61897831 61897831 C A INCENP Silent p.R278R 0.29 TCGA-IG-A8O2-01 11 67219230 67219230 C T GPR152 Silent p.P322P 0.23 TCGA-IG-A8O2-01 11 71293138 71293138 G T KRTAP5-11 3'UTR 0.21 TCGA-IG-A8O2-01 11 72853031 72853031 A T FCHSD2 5'UTR 0.40 TCGA-IG-A8O2-01 11 86120398 86120398 G A CCDC81 Silent p.P403P 0.22 TCGA-IG-A8O2-01 11 96125434 96125437 TCTT - JRKL 3'UTR 0.37 TCGA-IG-A8O2-01 12 109831212 109831212 T - MYO1H Frame_Shift_Del p.Y69Ifs*16 0.10 TCGA-IG-A8O2-01 12 110475748 110475748 A G ANKRD13A 3'UTR 0.33 TCGA-IG-A8O2-01 12 11420400 11420400 T C PRB3 Silent p.P219P 0.26 TCGA-IG-A8O2-01 12 1963175 1963175 C T CACNA2D4 Missense_Mutation p.A730T 0.45 deleterious(0.01) possibly_damaging(0.797) TCGA-IG-A8O2-01 12 20774228 20774228 A C PDE3A Splice_Site p.X475_splice 0.21 TCGA-IG-A8O2-01 12 20874792 20874792 G C SLCO1C1 Missense_Mutation p.G277A 0.18 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 12 46318804 46318804 T C SCAF11 Missense_Mutation p.I1205V 0.18 tolerated(0.94) benign(0.002) TCGA-IG-A8O2-01 12 75897754 75897754 C A KRR1 Missense_Mutation p.R254L 0.33 deleterious(0) benign(0.366) TCGA-IG-A8O2-01 12 9994939 9994939 T G KLRF1 Missense_Mutation p.L166R 0.24 tolerated(0.07) benign(0.309) TCGA-IG-A8O2-01 13 103054074 103054074 C G FGF14 5'UTR 0.18 TCGA-IG-A8O2-01 13 113140238 113140238 G A TUBGCP3 3'UTR 0.19 TCGA-IG-A8O2-01 13 29242660 29242660 G A POMP Silent p.Q71Q 0.17 TCGA-IG-A8O2-01 13 36049167 36049167 A G MAB21L1 3'UTR 0.20 TCGA-IG-A8O2-01 13 50592451 50592451 A C KCNRG Intron 0.23 TCGA-IG-A8O2-01 14 102392107 102392107 T G PPP2R5C 3'UTR 0.31 TCGA-IG-A8O2-01 14 60193766 60193766 C A RTN1 Nonsense_Mutation p.E546* 0.34 TCGA-IG-A8O2-01 14 64491122 64491122 T C SYNE2 Missense_Mutation p.S1929P 0.33 probably_damaging(0.999) TCGA-IG-A8O2-01 14 93648618 93648618 T C MOAP1 3'UTR 0.40 TCGA-IG-A8O2-01 15 23006588 23006588 G A NIPA2 Missense_Mutation p.A239V 0.14 deleterious(0) probably_damaging(0.981) TCGA-IG-A8O2-01 15 23931297 23931297 C T NDN 3'UTR 0.32 TCGA-IG-A8O2-01 15 27778007 27778007 G A GABRG3 Missense_Mutation p.V462I 0.13 tolerated(0.43) probably_damaging(0.978) TCGA-IG-A8O2-01 15 48062933 48062933 G T SEMA6D Missense_Mutation p.V725F 0.42 deleterious(0.05) benign(0.439) TCGA-IG-A8O2-01 15 48702628 48702628 C G FBN1 3'UTR 0.31 TCGA-IG-A8O2-01 15 75219207 75219207 T C COX5A Missense_Mutation p.Y80C 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-IG-A8O2-01 15 77907091 77907091 C G LINGO1 Silent p.R386R 0.29 TCGA-IG-A8O2-01 15 81614790 81614790 C T STARD5 Missense_Mutation p.E81K 0.65 tolerated(1) benign(0.01) TCGA-IG-A8O2-01 15 91459419 91459419 T C MAN2A2 Missense_Mutation p.L976P 0.61 deleterious(0) probably_damaging(1) TCGA-IG-A8O2-01 16 20809366 20809366 G C ERI2 Missense_Mutation p.P586A 0.36 tolerated(0.55) benign(0.156) TCGA-IG-A8O2-01 16 21181911 21181911 G A TMEM159 Missense_Mutation p.V84I 0.23 deleterious(0.04) benign(0.27) TCGA-IG-A8O2-01 16 27840120 27840120 A C GSG1L Missense_Mutation p.F274V 0.56 tolerated(0.12) possibly_damaging(0.577) TCGA-IG-A8O2-01 16 31341216 31341216 C T ITGAM Missense_Mutation p.T990I 0.38 tolerated(0.75) benign(0.007) TCGA-IG-A8O2-01 16 3656556 3656556 C T SLX4 Missense_Mutation p.A227T 0.47 tolerated(0.48) benign(0.027) TCGA-IG-A8O2-01 16 46534259 46534259 C T ANKRD26P1 RNA 0.47 TCGA-IG-A8O2-01 16 50063691 50063691 A T CNEP1R1 Silent p.I68I 0.18 TCGA-IG-A8O2-01 16 50264337 50264337 C G PAPD5 3'UTR 0.35 TCGA-IG-A8O2-01 16 66613777 66613777 G C CMTM2 Missense_Mutation p.E89D 0.37 tolerated(0.18) probably_damaging(0.953) TCGA-IG-A8O2-01 16 67268058 67268058 C T FHOD1 Silent p.K516K 0.17 TCGA-IG-A8O2-01 16 68598471 68598471 C A ZFP90 Missense_Mutation p.T594N 0.27 deleterious(0.03) possibly_damaging(0.858) TCGA-IG-A8O2-01 16 70942309 70942309 C T HYDIN Missense_Mutation p.A2748T 0.33 possibly_damaging(0.908) TCGA-IG-A8O2-01 16 75147474 75147474 T C LDHD Missense_Mutation p.N372D 0.49 tolerated(0.76) benign(0.019) TCGA-IG-A8O2-01 16 87440245 87440245 G A ZCCHC14 3'UTR 0.30 TCGA-IG-A8O2-01 17 26708470 26708470 C A SARM1 Missense_Mutation p.A206E 0.27 tolerated(1) benign(0.081) TCGA-IG-A8O2-01 17 28706683 28706683 C A CPD Missense_Mutation p.P229T 0.27 tolerated(0.22) benign(0.06) TCGA-IG-A8O2-01 17 33495370 33495370 G A UNC45B Missense_Mutation p.R481H 0.18 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 17 40990730 40990730 A G PSME3 Missense_Mutation p.I143V 0.13 tolerated_low_confidence(1) benign(0) TCGA-IG-A8O2-01 17 67109433 67109433 C T ABCA6 Silent p.L657L 0.75 TCGA-IG-A8O2-01 17 74097765 74097765 T G EXOC7 Missense_Mutation p.R102S 0.24 deleterious(0) benign(0.119) TCGA-IG-A8O2-01 17 7475192 7475192 T A SENP3 Intron 0.27 TCGA-IG-A8O2-01 17 7578427 7578427 T C TP53 Missense_Mutation p.H168R 0.62 deleterious(0) possibly_damaging(0.733) TCGA-IG-A8O2-01 17 77708928 77708928 C T ENPP7 Silent p.I162I 0.71 TCGA-IG-A8O2-01 17 80790167 80790167 A C ZNF750 Nonsense_Mutation p.L55* 0.72 TCGA-IG-A8O2-01 18 29784155 29784155 T C MEP1B Missense_Mutation p.S127P 0.17 tolerated(0.17) possibly_damaging(0.892) TCGA-IG-A8O2-01 18 51888438 51888438 T C C18orf54 Intron 0.07 TCGA-IG-A8O2-01 18 67992415 67992415 G A SOCS6 Missense_Mutation p.V171I 0.47 tolerated_low_confidence(0.22) benign(0.022) TCGA-IG-A8O2-01 18 71797743 71797743 T - FBXO15 Frame_Shift_Del p.K161Nfs*3 0.11 TCGA-IG-A8O2-01 19 15289708 15289721 ATGGCTGGGACTCG - NOTCH3 Frame_Shift_Del p.C1250Wfs*10 0.16 TCGA-IG-A8O2-01 19 16980490 16980490 G A SIN3B Missense_Mutation p.A708T 0.23 tolerated(0.19) benign(0.002) TCGA-IG-A8O2-01 19 22272088 22272088 G A ZNF257 Silent p.E512E 0.14 TCGA-IG-A8O2-01 19 2762546 2762546 G A SGTA Silent p.N198N 0.32 TCGA-IG-A8O2-01 19 30193514 30193514 G C C19orf12 3'UTR 0.42 TCGA-IG-A8O2-01 19 34855878 34855878 C T GPI Missense_Mutation p.P22S 0.19 tolerated_low_confidence(0.39) benign(0.014) TCGA-IG-A8O2-01 19 46032328 46032328 C T OPA3 Missense_Mutation p.A177T 0.50 tolerated_low_confidence(0.63) benign(0.008) TCGA-IG-A8O2-01 19 4689690 4689690 G C DPP9 Silent p.T547T 0.52 TCGA-IG-A8O2-01 19 51506391 51506391 C G KLK9 Missense_Mutation p.W243C 0.23 deleterious(0) probably_damaging(1) TCGA-IG-A8O2-01 19 7083472 7083472 A T ZNF557 Missense_Mutation p.Q337L 0.19 tolerated(0.58) benign(0.016) TCGA-IG-A8O2-01 19 8555253 8555253 C T PRAM1 Silent p.E648E 0.29 TCGA-IG-A8O2-01 1 161123890 161123890 G T UFC1 Nonsense_Mutation p.E35* 0.59 TCGA-IG-A8O2-01 1 161166195 161166195 C T ADAMTS4 Intron 0.56 TCGA-IG-A8O2-01 1 166831610 166831610 G A TADA1 Nonsense_Mutation p.Q124* 0.15 TCGA-IG-A8O2-01 1 167096645 167096645 G A DUSP27 Silent p.A759A 0.07 TCGA-IG-A8O2-01 1 170985417 170985417 C G MROH9 Missense_Mutation p.D616E 0.29 deleterious(0) probably_damaging(0.97) TCGA-IG-A8O2-01 1 172414300 172414300 T C C1orf105 Splice_Site p.X36_splice 0.24 TCGA-IG-A8O2-01 1 180904863 180904863 G A KIAA1614 Silent p.A606A 0.15 TCGA-IG-A8O2-01 1 192544903 192544903 G A RGS1 5'UTR 0.08 TCGA-IG-A8O2-01 1 196694303 196694303 G C CFH Missense_Mutation p.K583N 0.11 deleterious(0.03) possibly_damaging(0.485) TCGA-IG-A8O2-01 1 20879425 20879425 G A FAM43B 5'UTR 0.36 TCGA-IG-A8O2-01 1 209788522 209788522 G T LAMB3 3'UTR 0.14 TCGA-IG-A8O2-01 1 220160602 220160602 T A EPRS Nonsense_Mutation p.K974* 0.49 TCGA-IG-A8O2-01 1 240938980 240938980 C T RGS7 3'UTR 0.24 TCGA-IG-A8O2-01 1 248084839 248084839 C T OR2T8 Missense_Mutation p.H174Y 0.09 deleterious(0) benign(0.163) TCGA-IG-A8O2-01 1 248436938 248436938 A C OR2T33 Missense_Mutation p.L60R 0.20 deleterious(0) probably_damaging(0.992) TCGA-IG-A8O2-01 1 248790191 248790191 G T OR2T11 Missense_Mutation p.A80E 0.16 deleterious(0.01) benign(0.016) TCGA-IG-A8O2-01 1 25655647 25655647 T C RHD 3'UTR 0.32 TCGA-IG-A8O2-01 1 27101359 27101359 C T ARID1A Silent p.S1547S 0.47 TCGA-IG-A8O2-01 1 31838684 31838684 C T FABP3 3'UTR 0.18 TCGA-IG-A8O2-01 1 33796985 33796985 C T PHC2 Missense_Mutation p.R656H 0.26 tolerated(0.09) probably_damaging(0.943) TCGA-IG-A8O2-01 1 45189867 45189867 G A C1orf228 Silent p.L266L 0.23 TCGA-IG-A8O2-01 1 46088492 46088492 G A CCDC17 Missense_Mutation p.S224F 0.47 deleterious(0.01) possibly_damaging(0.807) TCGA-IG-A8O2-01 1 46763994 46763994 T C LRRC41 Missense_Mutation p.Y83C 0.41 deleterious(0) probably_damaging(0.975) TCGA-IG-A8O2-01 1 47746765 47746765 C A STIL Missense_Mutation p.L455F 0.32 tolerated(0.13) possibly_damaging(0.694) TCGA-IG-A8O2-01 1 82409141 82409141 C G LPHN2 Missense_Mutation p.L296V 0.22 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 1 86848664 86848664 C T ODF2L Missense_Mutation p.E153K 0.13 deleterious(0) probably_damaging(0.944) TCGA-IG-A8O2-01 1 93827094 93827094 G T DR1 3'UTR 0.32 TCGA-IG-A8O2-01 20 14305782 14305782 T G FLRT3 3'UTR 0.21 TCGA-IG-A8O2-01 20 21492752 21492752 C A NKX2-2 Missense_Mutation p.D211Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-IG-A8O2-01 20 257338 257338 G A C20orf96 Intron 0.40 TCGA-IG-A8O2-01 20 33097696 33097696 A G ITCH 3'Flank 0.34 TCGA-IG-A8O2-01 20 34240263 34240263 G A RBM12 3'UTR 0.18 TCGA-IG-A8O2-01 20 40074302 40074302 C G CHD6 Intron 0.19 TCGA-IG-A8O2-01 20 44045206 44045206 G T PIGT Missense_Mutation p.K79N 0.18 tolerated(0.09) probably_damaging(0.962) TCGA-IG-A8O2-01 20 47649631 47649631 C T ARFGEF2 Silent p.L1751L 0.17 TCGA-IG-A8O2-01 20 5093572 5093572 G C TMEM230 Intron 0.47 TCGA-IG-A8O2-01 20 52185334 52185334 G A ZNF217 3'UTR 0.18 TCGA-IG-A8O2-01 20 62730100 62730100 A G OPRL1 Missense_Mutation p.K354R 0.19 tolerated(1) benign(0.006) TCGA-IG-A8O2-01 20 8865304 8865304 A G PLCB1 3'UTR 0.06 TCGA-IG-A8O2-01 22 21341811 21341811 C T LZTR1 Silent p.T113T 0.08 TCGA-IG-A8O2-01 22 22274597 22274597 C T PPM1F 3'UTR 0.15 TCGA-IG-A8O2-01 22 23248849 23248852 CCCA ACC IGLC3 3'UTR 0.21 TCGA-IG-A8O2-01 22 41256535 41256535 C T DNAJB7 3'UTR 0.58 TCGA-IG-A8O2-01 2 136562471 136562471 C T LCT Missense_Mutation p.V1444M 0.20 deleterious(0) probably_damaging(0.998) TCGA-IG-A8O2-01 2 141806552 141806552 T C LRP1B Intron 0.66 TCGA-IG-A8O2-01 2 160175916 160175916 A G BAZ2B 3'UTR 0.25 TCGA-IG-A8O2-01 2 175614679 175614679 G A CHRNA1 Missense_Mutation p.R358W 0.21 deleterious(0) probably_damaging(0.998) TCGA-IG-A8O2-01 2 176982185 176982185 G A HOXD10 Silent p.Q208Q 0.38 TCGA-IG-A8O2-01 2 178098810 178098810 C T NFE2L2 Missense_Mutation p.E79K 0.37 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 2 178333231 178333231 C T AGPS Missense_Mutation p.H362Y 0.36 deleterious(0) possibly_damaging(0.862) TCGA-IG-A8O2-01 2 179320838 179320838 C T DFNB59 Missense_Mutation p.S170L 0.41 tolerated(0.48) possibly_damaging(0.737) TCGA-IG-A8O2-01 2 179411010 179411010 C A TTN Missense_Mutation p.S31683I 0.36 TCGA-IG-A8O2-01 2 197858322 197858322 C T ANKRD44 Missense_Mutation p.A785T 0.42 tolerated(0.1) possibly_damaging(0.685) TCGA-IG-A8O2-01 2 208842214 208842214 G A PLEKHM3 Missense_Mutation p.S236L 0.18 deleterious(0) benign(0.342) TCGA-IG-A8O2-01 2 220103229 220103229 C G GLB1L Missense_Mutation p.E405D 0.39 deleterious(0.05) probably_damaging(0.997) TCGA-IG-A8O2-01 2 225244631 225244631 C T FAM124B Missense_Mutation p.A343T 0.09 tolerated(0.45) benign(0.08) TCGA-IG-A8O2-01 2 233759339 233759339 T C NGEF Intron 0.35 TCGA-IG-A8O2-01 2 237074317 237074317 G C GBX2 3'UTR 0.11 TCGA-IG-A8O2-01 2 241631651 241631651 C T AQP12A Missense_Mutation p.S95F 0.22 deleterious(0) probably_damaging(0.964) TCGA-IG-A8O2-01 2 26203716 26203716 G C KIF3C Silent p.R357R 0.06 TCGA-IG-A8O2-01 2 40656660 40656660 C A SLC8A1 Missense_Mutation p.R254M 0.11 deleterious(0) probably_damaging(0.923) TCGA-IG-A8O2-01 2 42558018 42558018 A C EML4 3'UTR 0.33 TCGA-IG-A8O2-01 2 44513196 44513204 GGCACTTTG CGC SLC3A1 In_Frame_Del p.W264_D267delinsSH 0.13 TCGA-IG-A8O2-01 2 46607509 46607510 - A EPAS1 Frame_Shift_Ins p.M567Nfs*44 0.31 TCGA-IG-A8O2-01 2 47702214 47702214 G A MSH2 Missense_Mutation p.A604T 0.33 deleterious(0.03) probably_damaging(0.934) TCGA-IG-A8O2-01 2 54562094 54562094 A G C2orf73 Missense_Mutation p.N56S 0.19 tolerated(0.17) benign(0.39) TCGA-IG-A8O2-01 2 56599497 56599497 C T CCDC85A Nonsense_Mutation p.Q446* 0.37 TCGA-IG-A8O2-01 2 5840840 5840840 T C SOX11 3'UTR 0.15 TCGA-IG-A8O2-01 3 122606017 122606017 G A RP11-67L2.2 RNA 0.25 TCGA-IG-A8O2-01 3 130098602 130098602 G A COL6A5 Missense_Mutation p.G337R 0.11 deleterious(0.01) probably_damaging(0.99) TCGA-IG-A8O2-01 3 135868065 135868065 T C MSL2 3'UTR 0.20 TCGA-IG-A8O2-01 3 136056027 136056027 T A STAG1 3'UTR 0.11 TCGA-IG-A8O2-01 3 139074623 139074623 T A MRPS22 Missense_Mutation p.N326K 0.19 deleterious(0.02) benign(0.003) TCGA-IG-A8O2-01 3 142521063 142521063 T G TRPC1 Missense_Mutation p.L545R 0.15 deleterious(0.04) probably_damaging(0.987) TCGA-IG-A8O2-01 3 147130385 147130385 G C ZIC1 Missense_Mutation p.V355L 0.15 deleterious(0) probably_damaging(0.914) TCGA-IG-A8O2-01 3 15248038 15248038 G T CAPN7 Missense_Mutation p.Q12H 0.29 tolerated(0.17) benign(0.004) TCGA-IG-A8O2-01 3 160117253 160117253 C T IFT80 5'UTR 0.09 TCGA-IG-A8O2-01 3 168864376 168864376 C A MECOM 5'Flank 0.17 TCGA-IG-A8O2-01 3 180688017 180688017 G A FXR1 Missense_Mutation p.D492N 0.10 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-IG-A8O2-01 3 183551536 183551547 CGGAAGGAAAAT A PARL Frame_Shift_Del p.I299Yfs*29 0.17 TCGA-IG-A8O2-01 3 32567838 32567838 T C DYNC1LI1 3'UTR 0.13 TCGA-IG-A8O2-01 3 68781385 68781385 A T FAM19A4 3'UTR 0.27 TCGA-IG-A8O2-01 3 77695632 77695632 A T ROBO2 3'UTR 0.20 TCGA-IG-A8O2-01 3 77695780 77695780 G T ROBO2 3'UTR 0.21 TCGA-IG-A8O2-01 3 85961663 85961663 C G CADM2 Missense_Mutation p.Q217E 0.07 tolerated(0.08) benign(0.021) TCGA-IG-A8O2-01 3 88039960 88039960 C G HTR1F Missense_Mutation p.P21A 0.14 tolerated(0.86) benign(0.075) TCGA-IG-A8O2-01 3 88102996 88102996 A G CGGBP1 3'UTR 0.15 TCGA-IG-A8O2-01 4 109674128 109674128 C G ETNPPL Missense_Mutation p.D181H 0.30 deleterious(0) probably_damaging(0.961) TCGA-IG-A8O2-01 4 148786095 148786095 G A ARHGAP10 Silent p.E195E 0.36 TCGA-IG-A8O2-01 4 155488798 155488798 T C FGB Missense_Mutation p.Y182H 0.33 tolerated(0.1) possibly_damaging(0.873) TCGA-IG-A8O2-01 4 184368914 184368914 T G CDKN2AIP 3'UTR 0.26 TCGA-IG-A8O2-01 4 187541055 187541055 T C FAT1 Missense_Mutation p.I2229V 0.43 benign(0.019) TCGA-IG-A8O2-01 4 46042590 46042591 - T GABRG1 3'UTR 0.22 TCGA-IG-A8O2-01 4 83347630 83347630 T A HNRNPDL Missense_Mutation p.Y393F 0.28 tolerated_low_confidence(0.19) benign(0.431) TCGA-IG-A8O2-01 4 92520186 92520186 C G CCSER1 Missense_Mutation p.T894S 0.26 tolerated_low_confidence(0.1) benign(0.003) TCGA-IG-A8O2-01 5 126746293 126746293 G A MEGF10 Missense_Mutation p.S377N 0.20 deleterious(0.01) possibly_damaging(0.88) TCGA-IG-A8O2-01 5 137225149 137225149 C T PKD2L2 5'Flank 0.42 TCGA-IG-A8O2-01 5 140698912 140698912 C A TAF7 Missense_Mutation p.D234Y 0.65 deleterious(0) possibly_damaging(0.73) TCGA-IG-A8O2-01 5 171469136 171469136 G C STK10 3'UTR 0.72 TCGA-IG-A8O2-01 5 32126582 32126582 C T GOLPH3 Silent p.Q211Q 0.20 TCGA-IG-A8O2-01 5 76736675 76736675 T C WDR41 Missense_Mutation p.N282S 0.57 tolerated(0.54) benign(0.009) TCGA-IG-A8O2-01 5 78944904 78944904 G A PAPD4 Silent p.P306P 0.67 TCGA-IG-A8O2-01 6 10877517 10877517 G A GCM2 Missense_Mutation p.R67C 0.16 deleterious(0) probably_damaging(1) TCGA-IG-A8O2-01 6 148872166 148872166 A T SASH1 3'UTR 0.70 TCGA-IG-A8O2-01 6 150240472 150240472 A G RAET1G Intron 0.10 TCGA-IG-A8O2-01 6 154412611 154412611 C T OPRM1 Intron 0.65 TCGA-IG-A8O2-01 6 159463326 159463326 G A TAGAP Intron 0.73 TCGA-IG-A8O2-01 6 161494611 161494611 C T MAP3K4 Silent p.D688D 0.12 TCGA-IG-A8O2-01 6 24564464 24564464 C T KIAA0319 Silent p.S799S 0.40 TCGA-IG-A8O2-01 6 27879293 27879293 C A OR2B2 Missense_Mutation p.D269Y 0.13 deleterious(0) probably_damaging(0.977) TCGA-IG-A8O2-01 6 29691240 29691240 C T HLA-F 5'UTR 0.33 TCGA-IG-A8O2-01 6 40399644 40399644 G A LRFN2 Silent p.S403S 0.19 TCGA-IG-A8O2-01 6 46657521 46657521 T C TDRD6 Silent p.Y552Y 0.42 TCGA-IG-A8O2-01 6 71571660 71571660 A T B3GAT2 Missense_Mutation p.V253D 0.46 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 6 89794188 89794188 T G PNRC1 3'UTR 0.20 TCGA-IG-A8O2-01 7 127669037 127669037 G A LRRC4 Missense_Mutation p.R553W 0.24 deleterious(0) probably_damaging(0.952) TCGA-IG-A8O2-01 7 45956987 45956987 G A IGFBP3 Missense_Mutation p.P158L 0.22 tolerated(0.36) benign(0.008) TCGA-IG-A8O2-01 7 64533839 64533839 G A SNORA15 3'Flank 0.20 TCGA-IG-A8O2-01 7 93108802 93108802 A T CALCR Silent p.L41L 0.43 TCGA-IG-A8O2-01 8 100286546 100286546 G T VPS13B Missense_Mutation p.C879F 0.23 deleterious(0) possibly_damaging(0.831) TCGA-IG-A8O2-01 8 118188790 118188790 C T SLC30A8 3'Flank 0.15 TCGA-IG-A8O2-01 8 12946007 12946007 G A DLC1 Silent p.Y1427Y 0.14 TCGA-IG-A8O2-01 8 144989774 144989774 G A PLEC 3'UTR 0.16 TCGA-IG-A8O2-01 8 145556067 145556067 G T SCRT1 3'UTR 0.57 TCGA-IG-A8O2-01 8 28218519 28218519 G A ZNF395 Silent p.A41A 0.31 TCGA-IG-A8O2-01 8 30889849 30889849 C T PURG Silent p.Q150Q 0.30 TCGA-IG-A8O2-01 8 39679180 39679180 T A ADAM2 Missense_Mutation p.N90I 0.41 deleterious(0.04) benign(0.063) TCGA-IG-A8O2-01 8 56015428 56015428 G A XKR4 Missense_Mutation p.G127D 0.13 deleterious(0.01) probably_damaging(1) TCGA-IG-A8O2-01 8 61754274 61754274 T G CHD7 Silent p.A1535A 0.13 TCGA-IG-A8O2-01 8 61754275 61754275 A C CHD7 Missense_Mutation p.K1536Q 0.13 probably_damaging(0.994) TCGA-IG-A8O2-01 8 61754276 61754276 A G CHD7 Missense_Mutation p.K1536R 0.13 probably_damaging(0.986) TCGA-IG-A8O2-01 8 68110132 68110132 T A ARFGEF1 3'UTR 0.48 TCGA-IG-A8O2-01 8 75932277 75932277 C G CRISPLD1 Missense_Mutation p.L403V 0.41 tolerated(0.06) benign(0.151) TCGA-IG-A8O2-01 8 77896250 77896250 C T PEX2 Silent p.E55E 0.16 TCGA-IG-A8O2-01 9 130928602 130928602 T G CIZ1 Silent p.T857T 0.32 TCGA-IG-A8O2-01 9 137642670 137642670 A G COL5A1 Missense_Mutation p.K535R 0.06 probably_damaging(0.986) TCGA-IG-A8O2-01 9 16436780 16436780 C A BNC2 Missense_Mutation p.C471F 0.11 deleterious(0) probably_damaging(0.999) TCGA-IG-A8O2-01 9 21967209 21967209 G A C9orf53 Missense_Mutation p.R4H 0.27 unknown(0) TCGA-IG-A8O2-01 9 91609691 91609691 G T C9orf47 3'UTR 0.55 TCGA-IG-A8O2-01 X 123680763 123680763 C T TENM1 Missense_Mutation p.S871N 0.91 deleterious(0.03) probably_damaging(0.949) TCGA-IG-A8O2-01 X 151935214 151935214 G A MAGEA3 3'UTR 0.06 TCGA-IG-A8O2-01 X 155007780 155007780 C T SPRY3 3'UTR 0.39 TCGA-IG-A8O2-01 X 155251425 155251425 G C WASIR1 5'Flank 0.20 TCGA-IG-A8O2-01 X 155251430 155251430 G A WASIR1 5'Flank 0.20 TCGA-IG-A8O2-01 X 48417663 48417663 G A TBC1D25 Missense_Mutation p.G212S 0.82 deleterious(0) probably_damaging(0.998) TCGA-IG-A8O2-01 X 69497288 69497288 C T ARR3 Missense_Mutation p.P173L 0.25 tolerated(0.29) benign(0) TCGA-IG-A97H-01 10 32324841 32324841 T - KIF5B Frame_Shift_Del p.I265Ffs*18 0.31 TCGA-IG-A97H-01 10 45798763 45798763 C T OR13A1 3'UTR 0.27 TCGA-IG-A97H-01 10 72183444 72183444 A G EIF4EBP2 3'UTR 0.64 TCGA-IG-A97H-01 10 88719881 88719881 G A SNCG Missense_Mutation p.R96H 0.31 tolerated(0.06) benign(0.027) TCGA-IG-A97H-01 10 93810663 93810663 A G CPEB3 3'UTR 0.45 TCGA-IG-A97H-01 11 102562551 102562551 G A MMP27 Silent p.S496S 0.33 TCGA-IG-A97H-01 11 118661592 118661592 C T DDX6 Intron 0.47 TCGA-IG-A97H-01 11 1220217 1220217 C T MUC5AC RNA 0.27 TCGA-IG-A97H-01 11 18327774 18327774 C T HPS5 Silent p.R244R 0.07 TCGA-IG-A97H-01 11 26587287 26587287 T G MUC15 Missense_Mutation p.K67T 0.33 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-IG-A97H-01 11 27518698 27518698 T C LIN7C 3'UTR 0.33 TCGA-IG-A97H-01 11 30431873 30431873 T A MPPED2 3'UTR 0.29 TCGA-IG-A97H-01 11 43364068 43364068 A G API5 3'UTR 0.29 TCGA-IG-A97H-01 11 44080171 44080171 C T ACCSL Missense_Mutation p.R516C 0.17 tolerated(0.21) benign(0.007) TCGA-IG-A97H-01 11 46765717 46765718 - AGCA CKAP5 Frame_Shift_Ins p.R1986Afs*16 0.25 TCGA-IG-A97H-01 11 562263 562263 G A RASSF7 Silent p.P103P 0.49 TCGA-IG-A97H-01 11 57004102 57004102 T G APLNR Missense_Mutation p.D126A 0.16 deleterious(0) probably_damaging(0.992) TCGA-IG-A97H-01 11 62105564 62105564 C T ASRGL1 Missense_Mutation p.R39W 0.35 deleterious(0) possibly_damaging(0.773) TCGA-IG-A97H-01 11 6588195 6588195 T C DNHD1 Missense_Mutation p.I3819T 0.25 benign(0.047) TCGA-IG-A97H-01 12 11421033 11421033 G A PRB3 Silent p.T50T 0.33 TCGA-IG-A97H-01 12 11461767 11461767 G A PRB4 Silent p.P50P 0.04 TCGA-IG-A97H-01 12 20801778 20801778 A G PDE3A Missense_Mutation p.T908A 0.29 deleterious(0) probably_damaging(0.999) TCGA-IG-A97H-01 12 39703470 39703471 - A KIF21A Frame_Shift_Ins p.T1399Yfs*13 0.35 TCGA-IG-A97H-01 12 56143674 56143674 G A GDF11 3'UTR 0.56 TCGA-IG-A97H-01 12 56515545 56515545 C T ZC3H10 Missense_Mutation p.S400L 0.67 tolerated(0.11) possibly_damaging(0.875) TCGA-IG-A97H-01 12 57030103 57030103 A G BAZ2A 5'UTR 0.50 TCGA-IG-A97H-01 12 57927734 57927734 A T DCTN2 Splice_Site p.X228_splice 0.28 TCGA-IG-A97H-01 12 65634765 65634765 C T LEMD3 Nonsense_Mutation p.R735* 0.42 TCGA-IG-A97H-01 13 108860848 108860848 G C LIG4 3'UTR 0.24 TCGA-IG-A97H-01 13 28623675 28623675 C T FLT3 Splice_Site p.X295_splice 0.69 TCGA-IG-A97H-01 13 51397464 51397464 G C DLEU7 Intron 0.53 TCGA-IG-A97H-01 13 99534153 99534153 C A DOCK9 Missense_Mutation p.V890L 0.16 tolerated(0.09) possibly_damaging(0.658) TCGA-IG-A97H-01 14 104570719 104570719 G T ASPG Missense_Mutation p.D278Y 0.44 deleterious(0) possibly_damaging(0.813) TCGA-IG-A97H-01 14 23992792 23992792 T C ZFHX2 Missense_Mutation p.E2120G 0.57 unknown(0) TCGA-IG-A97H-01 14 69928356 69928357 - T SLC39A9 3'Flank 0.28 TCGA-IG-A97H-01 14 92470324 92470324 T A TRIP11 Silent p.A1332A 0.48 TCGA-IG-A97H-01 15 25339239 25339239 A T SNORD116-24 RNA 0.45 TCGA-IG-A97H-01 15 34649094 34649094 G A NUTM1 Missense_Mutation p.G934D 0.23 deleterious(0.03) benign(0.086) TCGA-IG-A97H-01 15 40914458 40914458 A G CASC5 Missense_Mutation p.I692V 0.29 tolerated(0.36) benign(0.009) TCGA-IG-A97H-01 15 42041627 42041627 C G MGA Missense_Mutation p.S1941C 0.19 deleterious(0) probably_damaging(0.998) TCGA-IG-A97H-01 15 44817510 44817510 A G CTDSPL2 3'UTR 0.14 TCGA-IG-A97H-01 15 92715088 92715088 G A RP11-152L20.3 Intron 0.36 TCGA-IG-A97H-01 16 23847536 23847536 G A PRKCB Missense_Mutation p.E14K 0.33 tolerated(0.21) benign(0.01) TCGA-IG-A97H-01 16 24582688 24582688 T A RBBP6 Missense_Mutation p.L1434Q 0.25 tolerated_low_confidence(0.09) unknown(0) TCGA-IG-A97H-01 16 28128767 28128767 C A XPO6 Missense_Mutation p.A626S 0.29 tolerated(0.06) possibly_damaging(0.685) TCGA-IG-A97H-01 16 28550253 28550253 T A NUPR1 5'UTR 0.31 TCGA-IG-A97H-01 16 70351454 70351454 A G DDX19B Missense_Mutation p.I118V 0.52 deleterious(0.01) possibly_damaging(0.749) TCGA-IG-A97H-01 16 89724674 89724674 G A SPATA33 Missense_Mutation p.G18E 0.18 tolerated(0.37) benign(0.002) TCGA-IG-A97H-01 16 89724680 89724680 C T SPATA33 Missense_Mutation p.T20I 0.19 tolerated(0.23) benign(0.001) TCGA-IG-A97H-01 16 89724682 89724682 T C SPATA33 Missense_Mutation p.Y21H 0.19 tolerated(0.5) benign(0.002) TCGA-IG-A97H-01 17 18202892 18202892 G A TOP3A Missense_Mutation p.P324L 0.50 deleterious(0) probably_damaging(1) TCGA-IG-A97H-01 17 36882710 36882710 C T MLLT6 3'UTR 0.25 TCGA-IG-A97H-01 17 40818726 40818726 G C TUBG2 Missense_Mutation p.D422H 0.34 deleterious(0.01) possibly_damaging(0.836) TCGA-IG-A97H-01 17 62496054 62496054 C A DDX5 Missense_Mutation p.G611V 0.53 deleterious_low_confidence(0.03) benign(0.034) TCGA-IG-A97H-01 17 7578291 7578291 T A TP53 Splice_Site p.X187_splice 0.42 TCGA-IG-A97H-01 19 17766135 17766135 G T UNC13A Missense_Mutation p.A447D 0.28 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-IG-A97H-01 19 17766136 17766136 C A UNC13A Missense_Mutation p.A447S 0.30 tolerated_low_confidence(0.17) possibly_damaging(0.676) TCGA-IG-A97H-01 19 44055806 44055806 C T XRCC1 Silent p.Q372Q 0.30 TCGA-IG-A97H-01 19 45381584 45381585 - T PVRL2 Intron 0.25 TCGA-IG-A97H-01 19 48675270 48675270 C T C19orf68 Missense_Mutation p.L71F 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-IG-A97H-01 19 48956267 48956267 C T GRWD1 Silent p.R442R 0.23 TCGA-IG-A97H-01 19 55048095 55048095 A C KIR3DX1 Missense_Mutation p.Y221S 0.24 tolerated(0.22) benign(0.013) TCGA-IG-A97H-01 19 9066912 9066912 G A MUC16 Missense_Mutation p.T6845I 0.48 unknown(0) TCGA-IG-A97H-01 19 991108 991108 C A WDR18 Missense_Mutation p.P257T 0.44 tolerated(0.63) benign(0.005) TCGA-IG-A97H-01 1 101004692 101004692 C T GPR88 Missense_Mutation p.S57L 0.34 tolerated(0.51) benign(0.016) TCGA-IG-A97H-01 1 104068788 104068788 G T RNPC3 Missense_Mutation p.R32S 0.27 deleterious(0) probably_damaging(0.988) TCGA-IG-A97H-01 1 109202518 109202518 G C HENMT1 5'UTR 0.33 TCGA-IG-A97H-01 1 110163817 110163817 G A AMPD2 Missense_Mutation p.G61D 0.43 deleterious_low_confidence(0.02) benign(0.004) TCGA-IG-A97H-01 1 110883931 110883931 G A RBM15 Missense_Mutation p.S635N 0.37 tolerated(0.33) benign(0.023) TCGA-IG-A97H-01 1 114414233 114414233 C G PTPN22 Missense_Mutation p.E5Q 0.20 deleterious(0.01) possibly_damaging(0.893) TCGA-IG-A97H-01 1 120854652 120854652 T G FAM72B 3'UTR 0.34 TCGA-IG-A97H-01 1 12416003 12416003 C - VPS13D Frame_Shift_Del p.P3243Lfs*8 0.19 TCGA-IG-A97H-01 1 149581283 149581283 C T RP11-277L2.3 5'Flank 0.38 TCGA-IG-A97H-01 1 152280506 152280506 G A FLG Missense_Mutation p.H2286Y 0.06 benign(0.152) TCGA-IG-A97H-01 1 156020165 156020165 T A UBQLN4 Missense_Mutation p.M220L 0.37 tolerated(0.41) benign(0.008) TCGA-IG-A97H-01 1 15717703 15717703 A G FHAD1 Intron 0.34 TCGA-IG-A97H-01 1 163325168 163325168 A G NUF2 Missense_Mutation p.D435G 0.30 deleterious(0.01) benign(0.064) TCGA-IG-A97H-01 1 17707573 17707573 G A PADI6 RNA 0.33 TCGA-IG-A97H-01 1 201791219 201791219 G A NAV1 3'UTR 0.23 TCGA-IG-A97H-01 1 204987868 204987868 G A NFASC 3'UTR 0.23 TCGA-IG-A97H-01 1 241031952 241031952 C A RGS7 Missense_Mutation p.D182Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-IG-A97H-01 1 25255542 25255542 C T RUNX3 Intron 0.24 TCGA-IG-A97H-01 1 32841985 32841985 C T BSDC1 Missense_Mutation p.G362D 0.18 tolerated(0.23) benign(0.415) TCGA-IG-A97H-01 1 33841156 33841156 G A PHC2 5'UTR 0.22 TCGA-IG-A97H-01 1 48694879 48694879 C A SLC5A9 Intron 0.32 TCGA-IG-A97H-01 1 51440096 51440096 A G CDKN2C 3'UTR 0.10 TCGA-IG-A97H-01 1 68947259 68947259 T C DEPDC1 Missense_Mutation p.D600G 0.17 deleterious(0.04) benign(0.003) TCGA-IG-A97H-01 1 89448294 89448294 T C RBMXL1 3'UTR 0.23 TCGA-IG-A97H-01 1 989341 989341 C G AGRN Missense_Mutation p.R1954G 0.18 deleterious(0.01) probably_damaging(0.96) TCGA-IG-A97H-01 20 1615955 1615955 C A SIRPG Missense_Mutation p.V347F 0.36 tolerated(0.14) benign(0.009) TCGA-IG-A97H-01 20 50701424 50701424 C G ZFP64 Missense_Mutation p.S537T 0.34 tolerated(0.19) probably_damaging(0.977) TCGA-IG-A97H-01 21 15882700 15882700 G A SAMSN1 Silent p.F232F 0.43 TCGA-IG-A97H-01 21 31743873 31743873 C A KRTAP13-2 3'UTR 0.40 TCGA-IG-A97H-01 21 31802694 31802694 C A KRTAP13-4 Missense_Mutation p.A34D 0.33 tolerated(1) benign(0.002) TCGA-IG-A97H-01 22 16256650 16256650 C A POTEH 3'UTR 0.05 TCGA-IG-A97H-01 22 19808147 19808147 C T GNB1L Silent p.T76T 0.28 TCGA-IG-A97H-01 22 30811775 30811775 A G SEC14L2 Missense_Mutation p.H231R 0.21 tolerated(0.05) benign(0.059) TCGA-IG-A97H-01 22 38130534 38130534 G A TRIOBP Silent p.R1397R 0.22 TCGA-IG-A97H-01 2 119599892 119599892 C T EN1 3'UTR 0.37 TCGA-IG-A97H-01 2 164468092 164468092 C T FIGN Missense_Mutation p.D84N 0.12 tolerated(0.06) benign(0.007) TCGA-IG-A97H-01 2 185802383 185802383 G T ZNF804A Missense_Mutation p.V754F 0.23 deleterious(0) possibly_damaging(0.656) TCGA-IG-A97H-01 2 186656763 186656763 T C FSIP2 Missense_Mutation p.S1723P 0.32 benign(0.006) TCGA-IG-A97H-01 2 198953678 198953678 G T PLCL1 Missense_Mutation p.D938Y 0.35 deleterious(0) possibly_damaging(0.786) TCGA-IG-A97H-01 2 242606219 242606219 C G ATG4B Missense_Mutation p.T233R 0.23 deleterious(0) benign(0.258) TCGA-IG-A97H-01 2 242662678 242662678 A G ING5 Silent p.K224K 0.44 TCGA-IG-A97H-01 2 30957354 30957354 G C CAPN13 Missense_Mutation p.L587V 0.28 tolerated(0.05) benign(0.372) TCGA-IG-A97H-01 2 56612129 56612129 C T CCDC85A 3'UTR 0.22 TCGA-IG-A97H-01 2 5834576 5834576 G T SOX11 3'UTR 0.20 TCGA-IG-A97H-01 2 64796257 64796265 GATATCCAT - AFTPH In_Frame_Del p.I708_D710del 0.19 TCGA-IG-A97H-01 2 99977012 99977012 G A EIF5B Silent p.K82K 0.09 TCGA-IG-A97H-01 3 100029351 100029351 C T TBC1D23 Silent p.I506I 0.20 TCGA-IG-A97H-01 3 100963611 100963611 A G IMPG2 Missense_Mutation p.S522P 0.53 tolerated(0.24) benign(0.004) TCGA-IG-A97H-01 3 142137304 142137304 A T XRN1 Intron 0.10 TCGA-IG-A97H-01 3 150931563 150931563 C T P2RY14 Missense_Mutation p.R181Q 0.12 tolerated(0.07) benign(0.007) TCGA-IG-A97H-01 3 168810878 168810878 G - MECOM Frame_Shift_Del p.S888Cfs*46 0.25 TCGA-IG-A97H-01 3 170110118 170110118 G T SKIL Missense_Mutation p.Q656H 0.23 tolerated(0.17) benign(0.192) TCGA-IG-A97H-01 3 180372723 180372723 G T CCDC39 Missense_Mutation p.Q253K 0.26 deleterious(0.03) possibly_damaging(0.661) TCGA-IG-A97H-01 3 43753309 43753309 G T ABHD5 Missense_Mutation p.L205F 0.41 tolerated(0.17) benign(0.049) TCGA-IG-A97H-01 3 97593312 97593312 C G CRYBG3 Missense_Mutation p.L1092V 0.49 TCGA-IG-A97H-01 4 106159920 106159921 - T TET2 Intron 0.60 TCGA-IG-A97H-01 4 109674127 109674127 T C ETNPPL Missense_Mutation p.D181G 0.38 tolerated(0.11) benign(0.247) TCGA-IG-A97H-01 4 119552902 119552902 C G RP11-384K6.6 RNA 0.17 TCGA-IG-A97H-01 4 152571182 152571182 T G FAM160A1 Silent p.A663A 0.33 TCGA-IG-A97H-01 4 16163076 16163076 C G TAPT1 3'UTR 0.15 TCGA-IG-A97H-01 4 17506070 17506070 C A QDPR Missense_Mutation p.G76V 0.17 deleterious(0) probably_damaging(0.998) TCGA-IG-A97H-01 4 25013980 25013980 A T LGI2 Missense_Mutation p.F266Y 0.35 deleterious(0) possibly_damaging(0.747) TCGA-IG-A97H-01 4 53273 53273 C T ZNF595 5'UTR 0.08 TCGA-IG-A97H-01 5 140188667 140188667 G A PCDHA4 Missense_Mutation p.S632N 0.36 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-IG-A97H-01 5 156787307 156787307 C G CYFIP2 Silent p.L919L 0.55 TCGA-IG-A97H-01 5 179264464 179264464 T C C5orf45 Missense_Mutation p.E320G 0.12 tolerated(1) benign(0.002) TCGA-IG-A97H-01 5 5462676 5462676 A C KIAA0947 Silent p.R1077R 0.39 TCGA-IG-A97H-01 5 7820737 7820737 A T ADCY2 Missense_Mutation p.I1020F 0.28 deleterious(0) probably_damaging(1) TCGA-IG-A97H-01 5 89770101 89770101 C T MBLAC2 Silent p.A3A 0.36 TCGA-IG-A97H-01 6 49700981 49700981 C T CRISP3 Missense_Mutation p.V173I 0.24 tolerated(0.52) benign(0.332) TCGA-IG-A97H-01 6 62757860 62757860 A G KHDRBS2 Missense_Mutation p.S87P 0.32 deleterious(0) probably_damaging(0.977) TCGA-IG-A97H-01 7 139416737 139416737 T C HIPK2 Missense_Mutation p.I33V 0.30 tolerated(1) benign(0) TCGA-IG-A97H-01 7 25266259 25266259 A T NPVF Missense_Mutation p.D175E 0.44 tolerated(0.17) benign(0.006) TCGA-IG-A97H-01 7 38468144 38468144 C A AMPH Intron 0.32 TCGA-IG-A97H-01 7 82583743 82583743 C T PCLO Missense_Mutation p.V2176I 0.31 unknown(0) TCGA-IG-A97H-01 7 87020907 87020907 C G CROT Missense_Mutation p.P463R 0.29 deleterious(0) probably_damaging(0.997) TCGA-IG-A97H-01 8 114389317 114389317 G A CSMD3 Intron 0.24 TCGA-IG-A97H-01 8 144733440 144733440 A G ZNF623 Silent p.K466K 0.31 TCGA-IG-A97H-01 8 23006036 23006036 G A TNFRSF10D Silent p.A95A 0.39 TCGA-IG-A97H-01 8 85618195 85618195 C T RALYL Intron 0.23 TCGA-IG-A97H-01 8 92983023 92983023 C T RUNX1T1 Missense_Mutation p.V479M 0.23 deleterious(0.02) possibly_damaging(0.82) TCGA-IG-A97H-01 9 114415683 114415683 A G DNAJC25 3'UTR 0.36 TCGA-IG-A97H-01 9 124801548 124801548 T A TTLL11 Intron 0.33 TCGA-IG-A97H-01 9 21187114 21187114 G A IFNA4 Silent p.S139S 0.44 TCGA-IG-A97H-01 9 90503680 90503680 G T SPATA31E1 Silent p.S1426S 0.18 TCGA-IG-A97H-01 X 155006011 155006011 T C SPRY3 3'UTR 0.17 TCGA-IG-A97H-01 X 40541948 40541948 C A MED14 Missense_Mutation p.G758C 0.17 deleterious(0.01) probably_damaging(0.922) TCGA-IG-A97H-01 X 50146073 50146073 A G DGKK RNA 0.62 TCGA-IG-A97H-01 X 71800902 71800902 C T PHKA1 Missense_Mutation p.A1208T 0.56 deleterious(0) benign(0.337) TCGA-IG-A97H-01 X 77381578 77381578 A T PGK1 3'UTR 0.64 TCGA-IG-A97H-01 Y 22751375 22751375 A G EIF1AY Missense_Mutation p.I115V 0.74 tolerated(0.19) benign(0.017) TCGA-IG-A97I-01 10 102684710 102684710 C A FAM178A Missense_Mutation p.S651Y 0.33 deleterious(0.01) possibly_damaging(0.735) TCGA-IG-A97I-01 10 105386894 105386894 T A SH3PXD2A Missense_Mutation p.N224Y 0.31 deleterious(0) possibly_damaging(0.847) TCGA-IG-A97I-01 10 25701176 25701176 C T GPR158 Intron 0.32 TCGA-IG-A97I-01 10 50598228 50598228 G C DRGX Missense_Mutation p.T67S 0.33 deleterious(0.04) probably_damaging(0.992) TCGA-IG-A97I-01 10 61719561 61719561 C G C10orf40 5'UTR 0.24 TCGA-IG-A97I-01 10 85901340 85901340 G A GHITM Silent p.V28V 0.31 TCGA-IG-A97I-01 10 93579775 93579783 ATGCTAAAG - TNKS2 In_Frame_Del p.A239_D241del 0.26 TCGA-IG-A97I-01 10 96495128 96495128 T A CYP2C18 Missense_Mutation p.I467N 0.22 deleterious(0) probably_damaging(0.996) TCGA-IG-A97I-01 10 99338347 99338347 C T ANKRD2 Silent p.A174A 0.42 TCGA-IG-A97I-01 11 123465506 123465506 G A GRAMD1B Nonsense_Mutation p.W135* 0.52 TCGA-IG-A97I-01 11 123624707 123624707 G C OR6X1 Missense_Mutation p.H174D 0.33 deleterious(0) probably_damaging(0.998) TCGA-IG-A97I-01 11 16872792 16872792 G A PLEKHA7 Silent p.Y214Y 0.27 TCGA-IG-A97I-01 11 24518708 24518708 G C LUZP2 5'Flank 0.55 TCGA-IG-A97I-01 11 48510440 48510440 C G OR4A47 Missense_Mutation p.F32L 0.09 tolerated_low_confidence(0.14) benign(0.005) TCGA-IG-A97I-01 11 55062977 55062977 G T TRIM51HP RNA 0.23 TCGA-IG-A97I-01 11 55135831 55135831 C G OR4A15 Missense_Mutation p.L158V 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-IG-A97I-01 11 55860877 55860877 C G OR8I2 Missense_Mutation p.L32V 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-IG-A97I-01 11 61213450 61213450 C G SDHAF2 Silent p.V136V 0.31 TCGA-IG-A97I-01 11 66455366 66455367 AA - SPTBN2 Frame_Shift_Del p.L2158Rfs*130 0.31 TCGA-IG-A97I-01 11 7618827 7618827 G A PPFIBP2 Missense_Mutation p.E137K 0.32 tolerated(0.06) probably_damaging(0.991) TCGA-IG-A97I-01 11 92085866 92085866 C A FAT3 Nonsense_Mutation p.Y196* 0.33 TCGA-IG-A97I-01 12 104337535 104337535 C G HSP90B1 Missense_Mutation p.S637C 0.10 deleterious(0) probably_damaging(0.994) TCGA-IG-A97I-01 12 105520920 105520920 C A KIAA1033 Missense_Mutation p.T351N 0.23 tolerated(0.25) benign(0.23) TCGA-IG-A97I-01 12 114793304 114793304 C G TBX5 3'UTR 0.30 TCGA-IG-A97I-01 12 117486955 117486955 C T TESC Missense_Mutation p.R73H 0.24 tolerated(0.35) benign(0.004) TCGA-IG-A97I-01 12 120941457 120941457 T A COQ5 3'UTR 0.27 TCGA-IG-A97I-01 12 121877875 121877875 T A KDM2B Missense_Mutation p.Q1205L 0.17 tolerated(0.13) probably_damaging(0.989) TCGA-IG-A97I-01 12 132625874 132625874 G A DDX51 Missense_Mutation p.A399V 0.33 tolerated(0.2) benign(0.227) TCGA-IG-A97I-01 12 33579301 33579301 G C SYT10 Missense_Mutation p.T94S 0.26 tolerated(1) benign(0) TCGA-IG-A97I-01 12 5154277 5154277 G A KCNA5 Missense_Mutation p.D322N 0.19 tolerated(0.07) probably_damaging(0.998) TCGA-IG-A97I-01 12 52884517 52884517 C G KRT6A Missense_Mutation p.E305Q 0.07 deleterious(0) probably_damaging(0.99) TCGA-IG-A97I-01 12 54394503 54394503 G A HOXC9 Silent p.L177L 0.22 TCGA-IG-A97I-01 12 56184369 56184369 T A SARNP Silent p.S138S 0.33 TCGA-IG-A97I-01 12 56334726 56334726 A G DGKA Missense_Mutation p.M355V 0.26 tolerated(0.32) benign(0) TCGA-IG-A97I-01 12 6682395 6682395 C T CHD4 Missense_Mutation p.R1801Q 0.39 deleterious(0) probably_damaging(0.986) TCGA-IG-A97I-01 12 91445036 91445036 G A KERA 3'UTR 0.27 TCGA-IG-A97I-01 13 41345279 41345279 G C MRPS31 5'UTR 0.36 TCGA-IG-A97I-01 13 47224409 47224409 G T LRCH1 Silent p.L127L 0.51 TCGA-IG-A97I-01 13 52035402 52035402 C A RPS4XP16 RNA 0.30 TCGA-IG-A97I-01 13 88328551 88328551 C T SLITRK5 Missense_Mutation p.T303M 0.29 tolerated(0.1) benign(0.018) TCGA-IG-A97I-01 14 102486374 102486374 C T DYNC1H1 Silent p.L2830L 0.25 TCGA-IG-A97I-01 14 106091101 106091101 G C IGHG4 Silent p.P232P 0.13 TCGA-IG-A97I-01 14 20295854 20295854 G A OR4N2 Missense_Mutation p.V83M 0.26 tolerated(0.14) benign(0.08) TCGA-IG-A97I-01 14 20482578 20482578 A C OR4K14 Missense_Mutation p.Y259D 0.48 deleterious(0) probably_damaging(0.992) TCGA-IG-A97I-01 14 64427584 64427584 G C SYNE2 Intron 0.21 TCGA-IG-A97I-01 14 65289846 65289846 G T SPTB 5'UTR 0.53 TCGA-IG-A97I-01 15 28116298 28116298 A C OCA2 Splice_Site p.X748_splice 0.36 TCGA-IG-A97I-01 15 30000830 30000830 T C TJP1 Missense_Mutation p.I1595V 0.29 tolerated_low_confidence(0.37) benign(0) TCGA-IG-A97I-01 15 37386766 37386766 T C MEIS2 Missense_Mutation p.I151V 0.39 deleterious(0.01) possibly_damaging(0.861) TCGA-IG-A97I-01 15 42003263 42003263 C T MGA Silent p.L934L 0.28 TCGA-IG-A97I-01 15 42155939 42155939 C T SPTBN5 Missense_Mutation p.R2371Q 0.26 benign(0.004) TCGA-IG-A97I-01 15 66610849 66610849 G T DIS3L Nonsense_Mutation p.E353* 0.38 TCGA-IG-A97I-01 15 78790410 78790410 G A IREB2 Silent p.S939S 0.12 TCGA-IG-A97I-01 15 83503179 83503179 T G WHAMM 3'UTR 0.36 TCGA-IG-A97I-01 16 15977900 15977900 T G FOPNL Missense_Mutation p.N64T 0.31 deleterious(0) probably_damaging(0.998) TCGA-IG-A97I-01 16 2030148 2030148 G C NOXO1 Missense_Mutation p.L151V 0.33 tolerated(0.28) benign(0.002) TCGA-IG-A97I-01 16 21033361 21033361 T A DNAH3 Missense_Mutation p.K1903I 0.19 deleterious(0) benign(0.439) TCGA-IG-A97I-01 16 30958499 30958499 C T FBXL19 Missense_Mutation p.P678L 0.10 tolerated(0.13) probably_damaging(0.927) TCGA-IG-A97I-01 16 57505846 57505846 A G POLR2C 3'UTR 0.32 TCGA-IG-A97I-01 16 58072241 58072241 G A MMP15 Missense_Mutation p.R128H 0.30 deleterious(0) probably_damaging(0.994) TCGA-IG-A97I-01 16 71482777 71482777 C G ZNF23 Missense_Mutation p.R384T 0.28 deleterious(0.03) possibly_damaging(0.727) TCGA-IG-A97I-01 16 89704484 89704484 G A DPEP1 Missense_Mutation p.E364K 0.08 tolerated(0.7) benign(0.245) TCGA-IG-A97I-01 16 89735825 89735825 G A SPATA33 Missense_Mutation p.E114K 0.16 deleterious(0) probably_damaging(0.981) TCGA-IG-A97I-01 16 89785741 89785741 G C VPS9D1 Intron 0.42 TCGA-IG-A97I-01 17 21909575 21909575 G C RP11-744K17.9 RNA 0.31 TCGA-IG-A97I-01 17 32598826 32598826 T C CCL7 3'UTR 0.17 TCGA-IG-A97I-01 17 42981907 42981907 G A FAM187A Missense_Mutation p.R237Q 0.45 tolerated(0.12) benign(0.017) TCGA-IG-A97I-01 17 47688654 47688654 C T SPOP Missense_Mutation p.A216T 0.34 deleterious(0) probably_damaging(0.928) TCGA-IG-A97I-01 17 56357257 56357257 G A MPO Silent p.L123L 0.35 TCGA-IG-A97I-01 17 59955383 59955383 G A INTS2 Missense_Mutation p.S782F 0.37 deleterious(0.02) probably_damaging(0.974) TCGA-IG-A97I-01 17 62754401 62754401 C T hsa-mir-6080 RNA 0.37 TCGA-IG-A97I-01 17 62796231 62796231 T C PLEKHM1P RNA 0.10 TCGA-IG-A97I-01 17 6904970 6904970 C G ALOX12 Nonsense_Mutation p.S334* 0.31 TCGA-IG-A97I-01 17 7572939 7572940 AG T TP53 Frame_Shift_Del p.P390Qfs*32 0.26 TCGA-IG-A97I-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.23 deleterious(0) probably_damaging(1) TCGA-IG-A97I-01 17 77807252 77807252 T C CBX4 3'UTR 0.26 TCGA-IG-A97I-01 18 39637872 39637872 A T PIK3C3 Silent p.G763G 0.61 TCGA-IG-A97I-01 18 748017 748017 C G YES1 Missense_Mutation p.E125Q 0.24 tolerated(0.21) benign(0.362) TCGA-IG-A97I-01 19 23328592 23328592 T A ZNF730 Missense_Mutation p.I249N 0.24 deleterious(0.03) probably_damaging(0.987) TCGA-IG-A97I-01 19 34263467 34263467 C T CHST8 Silent p.R258R 0.33 TCGA-IG-A97I-01 19 38189230 38189230 G A ZNF607 Missense_Mutation p.A601V 0.30 tolerated(0.45) benign(0.017) TCGA-IG-A97I-01 19 46129982 46129982 T A EML2 Missense_Mutation p.K442M 0.32 deleterious(0) probably_damaging(0.967) TCGA-IG-A97I-01 19 53014575 53014575 C T ZNF578 Missense_Mutation p.P314L 0.31 tolerated(0.08) benign(0.373) TCGA-IG-A97I-01 19 53884598 53884598 C T ZNF525 Nonsense_Mutation p.R256* 0.06 TCGA-IG-A97I-01 19 5456256 5456256 C T ZNRF4 Silent p.L252L 0.37 TCGA-IG-A97I-01 19 57324921 57324921 C T PEG3 3'UTR 0.36 TCGA-IG-A97I-01 19 8203386 8203386 C T FBN3 Missense_Mutation p.G310S 0.32 tolerated(0.17) possibly_damaging(0.871) TCGA-IG-A97I-01 19 8808930 8808930 A C ACTL9 Missense_Mutation p.V41G 0.06 tolerated(0.1) benign(0.335) TCGA-IG-A97I-01 1 103471858 103471858 A G COL11A1 Missense_Mutation p.V566A 0.29 unknown(0) TCGA-IG-A97I-01 1 110925488 110925488 C T SLC16A4 Missense_Mutation p.G63E 0.07 deleterious(0) probably_damaging(0.996) TCGA-IG-A97I-01 1 112533645 112533654 TCCCCGCCGC - KCND3 5'Flank 0.44 TCGA-IG-A97I-01 1 150671191 150671191 G A HORMAD1 Missense_Mutation p.S375F 0.27 tolerated(0.06) benign(0.033) TCGA-IG-A97I-01 1 152009416 152009416 G C S100A11 5'UTR 0.37 TCGA-IG-A97I-01 1 152283278 152283278 G C FLG Missense_Mutation p.Q1362E 0.24 benign(0.149) TCGA-IG-A97I-01 1 153660146 153660146 C T NPR1 Missense_Mutation p.A710V 0.31 tolerated(0.19) benign(0.297) TCGA-IG-A97I-01 1 156182430 156182440 TGGAAACCTGA GGAAACCTGAT SLC25A44 3'UTR 0.23 TCGA-IG-A97I-01 1 156182440 156182441 - T SLC25A44 3'UTR 0.28 TCGA-IG-A97I-01 1 170959002 170959002 A T MROH9 Nonsense_Mutation p.K296* 0.21 TCGA-IG-A97I-01 1 17563814 17563814 G C PADI1 Missense_Mutation p.G440A 0.33 tolerated(0.54) benign(0.422) TCGA-IG-A97I-01 1 200967542 200967542 G A KIF21B Silent p.L683L 0.07 TCGA-IG-A97I-01 1 228645538 228645538 G A HIST3H2A 5'UTR 0.34 TCGA-IG-A97I-01 1 23395626 23395626 G A KDM1A Silent p.L465L 0.30 TCGA-IG-A97I-01 1 235826107 235826107 G A LYST 3'UTR 0.32 TCGA-IG-A97I-01 1 236399539 236399539 C T ERO1LB Intron 0.43 TCGA-IG-A97I-01 1 33612835 33612835 C T TRIM62 Silent p.Q457Q 0.46 TCGA-IG-A97I-01 1 36214021 36214021 G C CLSPN Silent p.V819V 0.19 TCGA-IG-A97I-01 1 36552424 36552424 T C TEKT2 Missense_Mutation p.V203A 0.44 tolerated(0.38) benign(0.005) TCGA-IG-A97I-01 1 40092733 40092733 C T HEYL Missense_Mutation p.V145I 0.31 tolerated(0.64) benign(0.042) TCGA-IG-A97I-01 1 52882816 52882816 C T PRPF38A 3'UTR 0.35 TCGA-IG-A97I-01 1 89318844 89318844 T G GTF2B 3'UTR 0.33 TCGA-IG-A97I-01 1 89730518 89730518 C T GBP5 Missense_Mutation p.D334N 0.26 deleterious(0.03) benign(0.16) TCGA-IG-A97I-01 1 9789388 9789388 G C CLSTN1 3'UTR 0.12 TCGA-IG-A97I-01 20 11904537 11904537 T A BTBD3 3'UTR 0.12 TCGA-IG-A97I-01 20 2464529 2464529 G A ZNF343 Nonsense_Mutation p.R360* 0.17 TCGA-IG-A97I-01 20 46282984 46282985 - T NCOA3 3'Flank 0.20 TCGA-IG-A97I-01 20 49434786 49434786 C T BCAS4 Silent p.L73L 0.18 TCGA-IG-A97I-01 20 60886990 60886990 G A LAMA5 Silent p.Y3207Y 0.23 TCGA-IG-A97I-01 21 33765205 33765205 C G URB1 Missense_Mutation p.K5N 0.38 deleterious(0) probably_damaging(0.994) TCGA-IG-A97I-01 22 42981144 42981144 C A POLDIP3 3'UTR 0.21 TCGA-IG-A97I-01 22 46508717 46508717 A G FLJ27365 3'UTR 0.25 TCGA-IG-A97I-01 2 160176749 160176750 - A BAZ2B 3'UTR 0.20 TCGA-IG-A97I-01 2 168104729 168104729 T A XIRP2 Missense_Mutation p.F2276Y 0.29 benign(0.251) TCGA-IG-A97I-01 2 179330499 179330499 A G FKBP7 Nonstop_Mutation p.*223Qext*10 0.27 TCGA-IG-A97I-01 2 179580465 179580465 C G TTN Missense_Mutation p.R8559T 0.42 TCGA-IG-A97I-01 2 211336800 211336800 G C LANCL1 Missense_Mutation p.L28V 0.30 tolerated(0.24) benign(0.028) TCGA-IG-A97I-01 2 219319578 219319579 - TTCA USP37 3'UTR 0.19 TCGA-IG-A97I-01 2 229890405 229890405 G T PID1 Silent p.I230I 0.27 TCGA-IG-A97I-01 2 234856184 234856184 C T TRPM8 Intron 0.27 TCGA-IG-A97I-01 2 24888748 24888748 G A NCOA1 Missense_Mutation p.V74I 0.23 deleterious(0) possibly_damaging(0.472) TCGA-IG-A97I-01 2 44559648 44559648 C T PREPL Missense_Mutation p.D435N 0.33 tolerated(0.49) benign(0.379) TCGA-IG-A97I-01 2 95824709 95824709 C T ZNF514 Intron 0.38 TCGA-IG-A97I-01 2 95824710 95824710 C G ZNF514 Intron 0.38 TCGA-IG-A97I-01 3 113440550 113440550 T C NAA50 3'UTR 0.33 TCGA-IG-A97I-01 3 119582439 119582439 C T GSK3B Missense_Mutation p.R321Q 0.42 deleterious(0.01) possibly_damaging(0.477) TCGA-IG-A97I-01 3 132319381 132319405 TCCTCACAATAGTTTTCGTCATTGG - ACKR4 Frame_Shift_Del p.F47Yfs*8 0.14 TCGA-IG-A97I-01 3 164905307 164905307 T C SLITRK3 3'UTR 0.54 TCGA-IG-A97I-01 3 173999902 173999902 G T NLGN1 3'UTR 0.20 TCGA-IG-A97I-01 3 194146182 194146182 T C ATP13A3 Missense_Mutation p.I1068V 0.27 tolerated(0.44) benign(0.023) TCGA-IG-A97I-01 3 75478287 75478287 C A FAM86DP Intron 0.42 TCGA-IG-A97I-01 3 77671452 77671452 C G ROBO2 Missense_Mutation p.S1226C 0.26 tolerated(0.06) possibly_damaging(0.7) TCGA-IG-A97I-01 3 78646931 78646931 A C ROBO1 3'UTR 0.40 TCGA-IG-A97I-01 4 108866175 108866175 C T CYP2U1 Silent p.F180F 0.24 TCGA-IG-A97I-01 4 121957628 121957628 G T NDNF Missense_Mutation p.Q500K 0.34 tolerated(0.29) benign(0.119) TCGA-IG-A97I-01 4 183713835 183713835 A G TENM3 Missense_Mutation p.I2004V 0.50 tolerated(0.06) benign(0.141) TCGA-IG-A97I-01 4 42965095 42965095 C T GRXCR1 Nonsense_Mutation p.R191* 0.33 TCGA-IG-A97I-01 4 69096947 69096947 T C TMPRSS11B Silent p.L220L 0.28 TCGA-IG-A97I-01 4 75959102 75959102 C T PARM1 Missense_Mutation p.A260V 0.32 tolerated(0.17) possibly_damaging(0.768) TCGA-IG-A97I-01 4 81123458 81123458 A T PRDM8 Missense_Mutation p.Q281L 0.22 tolerated_low_confidence(0.35) benign(0) TCGA-IG-A97I-01 5 10410318 10410318 G T MARCH6 Nonsense_Mutation p.E541* 0.39 TCGA-IG-A97I-01 5 112176831 112176831 C T APC Missense_Mutation p.T1847M 0.32 probably_damaging(0.973) TCGA-IG-A97I-01 5 115781045 115781045 C G SEMA6A 3'UTR 0.26 TCGA-IG-A97I-01 5 137144064 137144064 T C NPY6R RNA 0.36 TCGA-IG-A97I-01 5 13737400 13737400 C G DNAH5 Missense_Mutation p.E3806Q 0.07 benign(0.403) TCGA-IG-A97I-01 5 158140134 158140134 C T EBF1 Missense_Mutation p.A405T 0.07 deleterious_low_confidence(0.04) benign(0.21) TCGA-IG-A97I-01 5 161522567 161522567 T A GABRG2 Missense_Mutation p.M109K 0.14 deleterious(0) benign(0.406) TCGA-IG-A97I-01 5 36972125 36972125 A T NIPBL Missense_Mutation p.S284C 0.37 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-IG-A97I-01 5 39425034 39425034 A G DAB2 5'UTR 0.33 TCGA-IG-A97I-01 5 45261098 45261098 C G HCN1 3'UTR 0.29 TCGA-IG-A97I-01 5 45262772 45262772 G A HCN1 Missense_Mutation p.P642S 0.19 tolerated(0.49) benign(0) TCGA-IG-A97I-01 5 6312341 6312341 T - CTD-2324F15.2 RNA 0.19 TCGA-IG-A97I-01 5 71495574 71495574 C T MAP1B Missense_Mutation p.P2131L 0.30 benign(0.253) TCGA-IG-A97I-01 5 840629 840629 G A ZDHHC11 Silent p.L255L 0.19 TCGA-IG-A97I-01 6 152652910 152652910 C T SYNE1 Missense_Mutation p.E4304K 0.19 benign(0.242) TCGA-IG-A97I-01 6 27925834 27925834 G C OR2B6 Missense_Mutation p.K272N 0.27 deleterious(0) probably_damaging(0.994) TCGA-IG-A97I-01 6 31725827 31725827 C T MSH5 Intron 0.22 TCGA-IG-A97I-01 6 38828241 38828241 G T DNAH8 Missense_Mutation p.M1772I 0.44 benign(0.206) TCGA-IG-A97I-01 6 49460500 49460500 A T CENPQ 3'UTR 0.25 TCGA-IG-A97I-01 6 70506734 70506734 C G LMBRD1 Missense_Mutation p.G14R 0.30 deleterious(0) probably_damaging(1) TCGA-IG-A97I-01 6 71236398 71236398 A C FAM135A Missense_Mutation p.Q1204P 0.31 tolerated(0.21) benign(0.397) TCGA-IG-A97I-01 6 73100340 73100340 C T RIMS1 Silent p.S1469S 0.30 TCGA-IG-A97I-01 6 97246324 97246324 C G GPR63 3'UTR 0.37 TCGA-IG-A97I-01 7 122634852 122634852 G A TAS2R16 Silent p.S279S 0.31 TCGA-IG-A97I-01 7 124569039 124569039 T C POT1 5'UTR 0.22 TCGA-IG-A97I-01 7 142569373 142569374 GA - TRPV6 3'UTR 0.28 TCGA-IG-A97I-01 7 20199486 20199486 G A MACC1 Silent p.H166H 0.32 TCGA-IG-A97I-01 7 45122609 45122609 C T NACAD Missense_Mutation p.R1057Q 0.29 tolerated(0.29) benign(0.001) TCGA-IG-A97I-01 8 110457161 110457161 C A PKHD1L1 Missense_Mutation p.S1688Y 0.14 deleterious(0.05) benign(0.014) TCGA-IG-A97I-01 8 121463519 121463521 GAA - MTBP In_Frame_Del p.E130del 0.16 TCGA-IG-A97I-01 8 141799622 141799622 C T PTK2 Silent p.L376L 0.11 TCGA-IG-A97I-01 8 29921356 29921356 G C TMEM66 3'UTR 0.20 TCGA-IG-A97I-01 8 41792124 41792124 T C KAT6A Missense_Mutation p.Q1205R 0.30 benign(0.366) TCGA-IG-A97I-01 8 95262302 95262302 T C GEM 3'UTR 0.22 TCGA-IG-A97I-01 9 112932713 112932714 - G PALM2-AKAP2 3'UTR 0.30 TCGA-IG-A97I-01 9 129850289 129850289 G A ANGPTL2 3'UTR 0.39 TCGA-IG-A97I-01 9 131388230 131388230 T G SPTAN1 Silent p.L2084L 0.54 TCGA-IG-A97I-01 9 135940034 135940034 G A CEL Silent p.L78L 0.15 TCGA-IG-A97I-01 9 72521031 72521031 T A C9orf135 Missense_Mutation p.S223R 0.32 tolerated(0.52) benign(0.015) TCGA-IG-A97I-01 9 84605932 84605932 G C SPATA31D1 Missense_Mutation p.D183H 0.36 deleterious(0.04) benign(0.045) TCGA-IG-A97I-01 X 100531514 100531514 A G TAF7L Missense_Mutation p.Y318H 0.53 tolerated(0.34) benign(0.059) TCGA-IG-A97I-01 X 151092505 151092505 C A MAGEA4 Silent p.R123R 0.75 TCGA-IG-A97I-01 X 19390939 19390939 T C MAP3K15 Silent p.P980P 0.78 TCGA-IG-A97I-01 X 23685653 23685653 C G PRDX4 5'UTR 0.70 TCGA-IG-A97I-01 X 72297621 72297621 C T PABPC1L2A 3'UTR 0.17 TCGA-JY-A6F8-01 10 108459130 108459130 C T SORCS1 Missense_Mutation p.D419N 0.46 tolerated(0.07) benign(0.147) TCGA-JY-A6F8-01 10 108589380 108589380 C T SORCS1 Silent p.L226L 0.23 TCGA-JY-A6F8-01 10 83635710 83635710 C T NRG3 Missense_Mutation p.T205M 0.24 deleterious(0.04) possibly_damaging(0.742) TCGA-JY-A6F8-01 10 89726816 89726816 T G PTEN 3'UTR 0.23 TCGA-JY-A6F8-01 10 96084118 96084118 G A PLCE1 Missense_Mutation p.A2172T 0.82 deleterious(0) probably_damaging(1) TCGA-JY-A6F8-01 10 98092319 98092319 G A DNTT Missense_Mutation p.R442H 0.21 tolerated(0.14) benign(0.003) TCGA-JY-A6F8-01 10 98125991 98125991 G A TLL2 3'UTR 0.25 TCGA-JY-A6F8-01 11 103036711 103036711 C G DYNC2H1 Missense_Mutation p.Q1566E 0.60 benign(0.001) TCGA-JY-A6F8-01 11 108788750 108788750 G A DDX10 Intron 0.54 TCGA-JY-A6F8-01 11 113286268 113286268 C T DRD2 Missense_Mutation p.V200M 0.27 deleterious(0.02) possibly_damaging(0.887) TCGA-JY-A6F8-01 11 1156592 1156592 C T MUC5AC Silent p.Y203Y 0.08 TCGA-JY-A6F8-01 11 121058567 121058567 T C TECTA Missense_Mutation p.I2009T 0.20 deleterious(0) probably_damaging(0.973) TCGA-JY-A6F8-01 11 125315934 125315934 G A FEZ1 3'UTR 0.21 TCGA-JY-A6F8-01 11 49805489 49805489 A C RP11-707M1.1 RNA 0.13 TCGA-JY-A6F8-01 11 61511391 61511391 G A DAGLA Silent p.T853T 0.27 TCGA-JY-A6F8-01 11 64360946 64360946 C T SLC22A12 Silent p.F192F 0.78 TCGA-JY-A6F8-01 11 65305287 65305294 CCGAGTCT - SCYL1 Frame_Shift_Del p.A656Gfs*18 0.11 TCGA-JY-A6F8-01 11 92087160 92087160 C T FAT3 Missense_Mutation p.P628S 0.34 probably_damaging(0.945) TCGA-JY-A6F8-01 12 124398985 124398985 C T DNAH10 Missense_Mutation p.R3370C 0.44 probably_damaging(1) TCGA-JY-A6F8-01 12 132905553 132905553 G A RP13-895J2.7 5'Flank 0.25 TCGA-JY-A6F8-01 12 14518656 14518656 G C ATF7IP 5'UTR 0.21 TCGA-JY-A6F8-01 12 23686081 23686081 C A SOX5 3'UTR 0.30 TCGA-JY-A6F8-01 12 4830038 4830038 G A GALNT8 Silent p.V65V 0.54 TCGA-JY-A6F8-01 12 48391419 48391419 G T COL2A1 Silent p.P167P 0.58 TCGA-JY-A6F8-01 12 52984742 52984742 G A KRT72 Nonsense_Mutation p.Q323* 0.19 TCGA-JY-A6F8-01 12 53918509 53918509 G A ATF7 Nonsense_Mutation p.R322* 0.63 TCGA-JY-A6F8-01 12 56998952 56998952 G C BAZ2A Missense_Mutation p.L887V 0.19 deleterious(0) probably_damaging(0.997) TCGA-JY-A6F8-01 12 57629254 57629254 C G NDUFA4L2 3'UTR 0.20 TCGA-JY-A6F8-01 13 101733971 101733971 C T NALCN Silent p.S1264S 0.75 TCGA-JY-A6F8-01 13 19748175 19748175 T G TUBA3C Missense_Mutation p.K394T 0.51 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-JY-A6F8-01 13 25825857 25825857 A G MTMR6 Missense_Mutation p.V512A 0.48 tolerated(0.09) benign(0.088) TCGA-JY-A6F8-01 13 46543763 46543763 C A ZC3H13 Missense_Mutation p.E972D 0.56 unknown(0) TCGA-JY-A6F8-01 14 106436671 106436671 G T ADAM6 RNA 0.25 TCGA-JY-A6F8-01 14 24040365 24040365 G T JPH4 Silent p.P525P 0.27 TCGA-JY-A6F8-01 14 24777026 24777026 G A CIDEB Silent p.L13L 0.47 TCGA-JY-A6F8-01 14 78140124 78140124 G T ALKBH1 3'UTR 0.45 TCGA-JY-A6F8-01 15 25223690 25223690 A C SNRPN 3'UTR 0.62 TCGA-JY-A6F8-01 15 30653988 30653988 A C CHRFAM7A 3'UTR 0.42 TCGA-JY-A6F8-01 15 33993251 33993251 G A RYR3 Silent p.A2151A 0.28 TCGA-JY-A6F8-01 15 48936984 48936984 G A FBN1 5'UTR 0.27 TCGA-JY-A6F8-01 15 51791379 51791379 G A DMXL2 Missense_Mutation p.H1348Y 0.26 deleterious(0) probably_damaging(0.998) TCGA-JY-A6F8-01 16 14234591 14234592 - A MKL2 Frame_Shift_Ins p.P44Tfs*40 0.31 TCGA-JY-A6F8-01 16 15225331 15225331 C T RP11-1186N24.5 RNA 0.30 TCGA-JY-A6F8-01 16 28606941 28606941 T C SULT1A2 Silent p.E68E 0.47 TCGA-JY-A6F8-01 16 51175812 51175812 T C SALL1 Silent p.Q107Q 0.38 TCGA-JY-A6F8-01 16 55363167 55363167 C T IRX6 Missense_Mutation p.P426L 0.51 deleterious(0.03) benign(0.015) TCGA-JY-A6F8-01 16 70500056 70500056 G T FUK Missense_Mutation p.D103Y 0.27 deleterious(0.03) possibly_damaging(0.863) TCGA-JY-A6F8-01 16 85111135 85111135 G A KIAA0513 Missense_Mutation p.A227T 0.30 deleterious(0.01) possibly_damaging(0.852) TCGA-JY-A6F8-01 16 87445847 87445847 C T ZCCHC14 Missense_Mutation p.S690N 0.25 deleterious(0) possibly_damaging(0.905) TCGA-JY-A6F8-01 16 88779039 88779039 C T CTU2 Silent p.L155L 0.25 TCGA-JY-A6F8-01 17 1367940 1367940 G C MYO1C 3'UTR 0.39 TCGA-JY-A6F8-01 17 36633839 36633839 G A ARHGAP23 Missense_Mutation p.R713H 0.33 deleterious(0) probably_damaging(0.956) TCGA-JY-A6F8-01 17 43898768 43898768 G A CRHR1 Missense_Mutation p.V97M 0.22 tolerated(0.09) possibly_damaging(0.475) TCGA-JY-A6F8-01 17 4872451 4872451 C T CAMTA2 Missense_Mutation p.R1178H 0.27 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-JY-A6F8-01 17 73910884 73910884 C T FBF1 Missense_Mutation p.E905K 0.65 deleterious(0.02) possibly_damaging(0.715) TCGA-JY-A6F8-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.72 TCGA-JY-A6F8-01 18 19996488 19996488 T C CTAGE1 Silent p.A429A 0.20 TCGA-JY-A6F8-01 18 50592466 50592466 T C DCC Silent p.F397F 0.35 TCGA-JY-A6F8-01 18 56652849 56652849 C T ZNF532 3'UTR 0.17 TCGA-JY-A6F8-01 18 77246359 77246359 C G NFATC1 Missense_Mutation p.A722G 0.81 tolerated(0.47) benign(0.124) TCGA-JY-A6F8-01 18 7949302 7949302 C T PTPRM Missense_Mutation p.R263C 0.08 tolerated(0.05) possibly_damaging(0.892) TCGA-JY-A6F8-01 19 15220446 15220446 G A SYDE1 Intron 0.14 TCGA-JY-A6F8-01 19 17433925 17433925 G A DDA1 3'UTR 0.50 TCGA-JY-A6F8-01 19 31767196 31767196 C T TSHZ3 3'UTR 0.24 TCGA-JY-A6F8-01 19 44515108 44515108 A T ZNF230 Missense_Mutation p.K306I 0.12 deleterious(0) probably_damaging(1) TCGA-JY-A6F8-01 19 46464310 46464310 C T NOVA2 Missense_Mutation p.G63R 0.57 deleterious(0) unknown(0) TCGA-JY-A6F8-01 19 53911118 53911118 G A ZNF765 Missense_Mutation p.D104N 0.16 tolerated(0.1) benign(0.111) TCGA-JY-A6F8-01 1 156215580 156215580 G A PAQR6 Silent p.Y20Y 0.40 TCGA-JY-A6F8-01 1 15833452 15833452 C T CASP9 Missense_Mutation p.R191Q 0.33 tolerated(0.7) benign(0.001) TCGA-JY-A6F8-01 1 158623151 158623151 A G SPTA1 Missense_Mutation p.L1034P 0.11 deleterious(0) probably_damaging(0.956) TCGA-JY-A6F8-01 1 158687373 158687373 A G OR6K3 Missense_Mutation p.F178S 0.31 deleterious(0) probably_damaging(1) TCGA-JY-A6F8-01 1 158735662 158735662 C T OR6N1 Missense_Mutation p.D271N 0.18 tolerated(0.08) probably_damaging(0.914) TCGA-JY-A6F8-01 1 1588836 1588836 G A CDK11B Missense_Mutation p.R34C 0.35 probably_damaging(0.968) TCGA-JY-A6F8-01 1 173499144 173499144 C T SLC9C2 Missense_Mutation p.R738H 0.67 tolerated(0.17) benign(0.003) TCGA-JY-A6F8-01 1 182525199 182525199 G A RGSL1 3'UTR 0.23 TCGA-JY-A6F8-01 1 190068031 190068031 A T BRINP3 Missense_Mutation p.L473H 0.35 tolerated(0.17) benign(0.43) TCGA-JY-A6F8-01 1 207218158 207218158 C T YOD1 3'UTR 0.28 TCGA-JY-A6F8-01 1 207244561 207244561 C T PFKFB2 Silent p.L417L 0.42 TCGA-JY-A6F8-01 1 209803217 209803217 C A LAMB3 Missense_Mutation p.A333S 0.33 tolerated(0.57) benign(0.232) TCGA-JY-A6F8-01 1 245849384 245849384 C T KIF26B Silent p.S1033S 0.75 TCGA-JY-A6F8-01 1 29070455 29070456 CA - YTHDF2 Frame_Shift_Del p.H559Lfs*2 0.25 TCGA-JY-A6F8-01 1 54474711 54474711 C T LDLRAD1 Missense_Mutation p.D188N 0.21 tolerated(0.05) probably_damaging(1) TCGA-JY-A6F8-01 1 57340647 57340647 C G C8A Missense_Mutation p.P66R 0.29 deleterious(0) probably_damaging(0.998) TCGA-JY-A6F8-01 1 57399057 57399057 A C C8B Missense_Mutation p.S501R 0.40 deleterious(0) probably_damaging(0.945) TCGA-JY-A6F8-01 1 74540391 74540391 T C LRRIQ3 Silent p.K317K 0.47 TCGA-JY-A6F8-01 1 8414696 8414696 T A RERE 3'UTR 0.54 TCGA-JY-A6F8-01 1 85648339 85648339 A G SYDE2 Silent p.A662A 0.53 TCGA-JY-A6F8-01 1 87181419 87181419 A T SH3GLB1 Nonsense_Mutation p.K29* 0.21 TCGA-JY-A6F8-01 20 10654210 10654210 G A JAG1 5'UTR 1.00 TCGA-JY-A6F8-01 20 20278968 20278968 C T C20orf26 Silent p.H1120H 0.11 TCGA-JY-A6F8-01 20 44536519 44536519 C T PLTP Silent p.T170T 0.50 TCGA-JY-A6F8-01 20 4836740 4836740 G A SLC23A2 3'UTR 0.74 TCGA-JY-A6F8-01 20 60512232 60512232 C A CDH4 3'UTR 0.73 TCGA-JY-A6F8-01 20 61992443 61992443 G A CHRNA4 Silent p.R25R 0.94 TCGA-JY-A6F8-01 20 746258 746258 C G SLC52A3 Missense_Mutation p.G54A 0.18 deleterious(0.01) possibly_damaging(0.532) TCGA-JY-A6F8-01 2 120997651 120997651 C T RALB 5'UTR 0.38 TCGA-JY-A6F8-01 2 135756498 135756498 C T MAP3K19 Silent p.T128T 0.35 TCGA-JY-A6F8-01 2 168102105 168102105 A G XIRP2 Silent p.E1401E 0.56 TCGA-JY-A6F8-01 2 171849801 171849801 T C TLK1 3'UTR 0.64 TCGA-JY-A6F8-01 2 179465721 179465721 C T TTN Missense_Mutation p.R18637H 0.55 TCGA-JY-A6F8-01 2 180306744 180306745 - A ZNF385B 3'UTR 0.26 TCGA-JY-A6F8-01 2 216237007 216237007 G A FN1 Silent p.F2113F 0.28 TCGA-JY-A6F8-01 2 236706515 236706515 C T AGAP1 Silent p.A262A 0.41 TCGA-JY-A6F8-01 2 27886476 27886476 T C SLC4A1AP 5'UTR 0.46 TCGA-JY-A6F8-01 2 27931241 27931241 G A AC074091.13 5'UTR 0.33 TCGA-JY-A6F8-01 2 44039900 44039900 C G ABCG5 3'UTR 0.20 TCGA-JY-A6F8-01 2 56612188 56612188 T - CCDC85A 3'UTR 0.27 TCGA-JY-A6F8-01 2 65540553 65540553 G C SPRED2 3'UTR 0.24 TCGA-JY-A6F8-01 2 86281401 86281401 C T POLR1A Silent p.T690T 0.46 TCGA-JY-A6F8-01 2 89247261 89247261 G A IGKV1-5 Missense_Mutation p.L12F 0.29 tolerated(0.14) possibly_damaging(0.529) TCGA-JY-A6F8-01 2 95542477 95542477 G A TEKT4 Missense_Mutation p.R424H 0.22 tolerated(0.24) benign(0.081) TCGA-JY-A6F8-01 2 9628289 9628289 A G IAH1 Missense_Mutation p.Y193C 0.17 deleterious(0) benign(0.254) TCGA-JY-A6F8-01 3 112357842 112357842 G A CCDC80 Missense_Mutation p.P304L 0.29 deleterious(0.02) benign(0.008) TCGA-JY-A6F8-01 3 149563810 149563810 C T RNF13 5'UTR 0.29 TCGA-JY-A6F8-01 3 186953746 186953746 G A MASP1 Missense_Mutation p.S638L 0.21 tolerated(0.08) benign(0.031) TCGA-JY-A6F8-01 3 189692408 189692408 C T LEPREL1 Missense_Mutation p.R464Q 0.32 deleterious(0) probably_damaging(0.995) TCGA-JY-A6F8-01 3 19322812 19322812 A G KCNH8 Missense_Mutation p.K145E 0.46 tolerated(0.47) possibly_damaging(0.573) TCGA-JY-A6F8-01 3 25639325 25639326 - A RARB 3'UTR 0.58 TCGA-JY-A6F8-01 3 42567437 42567437 G A VIPR1 Silent p.P117P 0.41 TCGA-JY-A6F8-01 3 48200178 48200178 A G CDC25A 3'UTR 0.26 TCGA-JY-A6F8-01 3 56026193 56026193 C G ERC2 Missense_Mutation p.R716P 0.41 deleterious(0) possibly_damaging(0.762) TCGA-JY-A6F8-01 3 77600066 77600066 C T ROBO2 Missense_Mutation p.A402V 0.60 tolerated(0.16) possibly_damaging(0.798) TCGA-JY-A6F8-01 4 101946087 101946087 A C PPP3CA 3'UTR 0.47 TCGA-JY-A6F8-01 4 110791309 110791309 G A LRIT3 Silent p.K468K 0.20 TCGA-JY-A6F8-01 4 123664834 123664834 A G BBS12 Missense_Mutation p.Q596R 0.27 tolerated(0.32) benign(0.002) TCGA-JY-A6F8-01 4 22694571 22694571 T G GBA3 5'UTR 0.09 TCGA-JY-A6F8-01 4 3156053 3156054 - T HTT Frame_Shift_Ins p.S1179Kfs*27 0.13 TCGA-JY-A6F8-01 4 54373551 54373551 G A LNX1 Silent p.S236S 0.15 TCGA-JY-A6F8-01 4 85715781 85715781 C T WDFY3 Silent p.V1126V 0.16 TCGA-JY-A6F8-01 4 8620212 8620212 C T CPZ Silent p.N520N 0.33 TCGA-JY-A6F8-01 4 99341172 99341172 A G RAP1GDS1 Missense_Mutation p.I394V 0.30 tolerated(1) benign(0) TCGA-JY-A6F8-01 5 132029267 132029267 A G KIF3A 3'UTR 0.20 TCGA-JY-A6F8-01 5 169673185 169673185 T G C5orf58 3'UTR 0.16 TCGA-JY-A6F8-01 5 177642408 177642408 G A PHYKPL Silent p.C317C 0.25 TCGA-JY-A6F8-01 5 180669293 180669293 A C GNB2L1 Missense_Mutation p.I54M 0.58 deleterious(0.01) possibly_damaging(0.55) TCGA-JY-A6F8-01 5 32229613 32229613 A G MTMR12 3'UTR 0.22 TCGA-JY-A6F8-01 5 56181839 56181839 C T MAP3K1 Missense_Mutation p.R1355C 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-JY-A6F8-01 6 119623233 119623233 C A MAN1A1 Missense_Mutation p.D246Y 0.29 deleterious(0) probably_damaging(0.992) TCGA-JY-A6F8-01 6 136513287 136513287 C T PDE7B 3'UTR 0.19 TCGA-JY-A6F8-01 6 154431489 154431489 G T OPRM1 Intron 0.27 TCGA-JY-A6F8-01 6 160963720 160963720 C A LPA Missense_Mutation p.R1840M 0.34 deleterious(0) benign(0.265) TCGA-JY-A6F8-01 6 20152953 20152953 C G MBOAT1 Missense_Mutation p.W49C 0.78 deleterious(0.02) possibly_damaging(0.473) TCGA-JY-A6F8-01 6 47685041 47685041 T C GPR115 Missense_Mutation p.L663S 0.05 deleterious(0) probably_damaging(0.999) TCGA-JY-A6F8-01 6 49425720 49425720 T C MUT Missense_Mutation p.Y146C 0.25 deleterious_low_confidence(0) probably_damaging(1) TCGA-JY-A6F8-01 6 66005917 66005917 A C EYS Missense_Mutation p.L621R 0.15 tolerated(0.2) benign(0.348) TCGA-JY-A6F8-01 6 72974683 72974683 T G RIMS1 Missense_Mutation p.L1041R 0.43 deleterious(0.03) benign(0.077) TCGA-JY-A6F8-01 7 1732816 1732816 G A AC074389.6 3'UTR 0.17 TCGA-JY-A6F8-01 7 4153892 4153892 G A SDK1 Missense_Mutation p.R1270Q 0.17 deleterious(0.01) benign(0.319) TCGA-JY-A6F8-01 7 42006106 42006106 G T GLI3 Missense_Mutation p.S855R 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-JY-A6F8-01 7 62752115 62752115 T G ZNF733P RNA 0.23 TCGA-JY-A6F8-01 7 64004109 64004109 G T ZNF680 Missense_Mutation p.Q77K 0.43 deleterious(0.01) benign(0.001) TCGA-JY-A6F8-01 7 94294767 94294767 C A PEG10 3'UTR 0.13 TCGA-JY-A6F8-01 8 108264090 108264090 T A ANGPT1 Missense_Mutation p.D497V 0.20 deleterious(0.01) possibly_damaging(0.822) TCGA-JY-A6F8-01 8 110393634 110393634 G A PKHD1L1 Missense_Mutation p.D67N 0.15 tolerated(0.21) benign(0.428) TCGA-JY-A6F8-01 8 113347567 113347567 T G CSMD3 Missense_Mutation p.S2386R 0.06 tolerated(0.23) benign(0.085) TCGA-JY-A6F8-01 8 116422555 116422555 G A TRPS1 3'UTR 0.12 TCGA-JY-A6F8-01 8 116422556 116422556 T G TRPS1 3'UTR 0.11 TCGA-JY-A6F8-01 8 128750895 128750895 C T MYC Silent p.I144I 0.08 TCGA-JY-A6F8-01 8 133492434 133492434 C T KCNQ3 Missense_Mutation p.E116K 0.12 deleterious(0) benign(0.393) TCGA-JY-A6F8-01 8 133492450 133492450 C T KCNQ3 Silent p.L110L 0.09 TCGA-JY-A6F8-01 8 133492484 133492484 C T KCNQ3 Missense_Mutation p.R99K 0.09 tolerated(0.24) benign(0.334) TCGA-JY-A6F8-01 8 133492510 133492510 C G KCNQ3 Missense_Mutation p.K90N 0.10 deleterious(0.05) possibly_damaging(0.738) TCGA-JY-A6F8-01 8 133492540 133492540 C T KCNQ3 Silent p.R80R 0.09 TCGA-JY-A6F8-01 8 13424530 13424530 G A C8orf48 Silent p.T10T 0.05 TCGA-JY-A6F8-01 8 2967787 2967787 C A CSMD1 Silent p.P2167P 0.87 TCGA-JY-A6F8-01 9 123632759 123632759 G A PHF19 Missense_Mutation p.P109L 0.35 deleterious(0.01) probably_damaging(0.93) TCGA-JY-A6F8-01 9 129645212 129645212 G T ZBTB34 3'UTR 0.16 TCGA-JY-A6F8-01 9 131016958 131016958 C T DNM1 Missense_Mutation p.R854C 0.20 deleterious_low_confidence(0) benign(0.197) TCGA-JY-A6F8-01 9 137726885 137726885 C T COL5A1 Silent p.S1735S 0.19 TCGA-JY-A6F8-01 9 137804889 137804889 G C FCN1 Missense_Mutation p.D147E 0.58 deleterious(0) probably_damaging(0.935) TCGA-JY-A6F8-01 9 139272097 139272097 C T SNAPC4 Silent p.S1394S 0.68 TCGA-JY-A6F8-01 9 15874582 15874582 C T CCDC171 Missense_Mutation p.T1174I 0.19 tolerated(0.1) possibly_damaging(0.628) TCGA-JY-A6F8-01 9 73001355 73001355 G A KLF9 3'UTR 0.07 TCGA-JY-A6F8-01 9 97863981 97863981 C T FANCC 3'UTR 0.56 TCGA-JY-A6F8-01 X 131261854 131261854 G C FRMD7 Missense_Mutation p.Q7E 0.93 tolerated(0.08) benign(0.037) TCGA-JY-A6F8-01 X 135288566 135288566 G C FHL1 Intron 1.00 TCGA-JY-A6F8-01 X 149997814 149997814 T A CD99L2 Intron 0.82 TCGA-JY-A6F8-01 X 153294592 153294592 G A MECP2 3'Flank 0.33 TCGA-JY-A6F8-01 X 154444770 154444770 T C VBP1 Missense_Mutation p.V4A 0.29 tolerated(0.73) benign(0) TCGA-JY-A6F8-01 X 32486681 32486681 G T DMD Silent p.L1032L 0.80 TCGA-JY-A6F8-01 X 37027451 37027451 C A FAM47C Missense_Mutation p.S323Y 0.77 deleterious(0.01) possibly_damaging(0.574) TCGA-JY-A6F8-01 X 71349781 71349781 C T RGAG4 Missense_Mutation p.R537H 0.77 tolerated_low_confidence(0.16) unknown(0) TCGA-JY-A6FA-01 10 131964815 131964815 C T GLRX3 Nonsense_Mutation p.Q175* 0.62 TCGA-JY-A6FA-01 10 21097518 21097518 T A NEBL Silent p.G894G 0.49 TCGA-JY-A6FA-01 10 21783676 21783676 C A CASC10 3'UTR 0.40 TCGA-JY-A6FA-01 10 37506700 37506700 G A ANKRD30A Missense_Mutation p.R998K 0.64 tolerated(1) benign(0.364) TCGA-JY-A6FA-01 10 45799654 45799654 G A OR13A1 Missense_Mutation p.L73F 0.58 deleterious(0.01) probably_damaging(1) TCGA-JY-A6FA-01 10 52390924 52390924 A T RP11-50E11.3 RNA 0.56 TCGA-JY-A6FA-01 10 72520180 72520188 CATTCCCGG - ADAMTS14 In_Frame_Del p.I1085_G1087del 0.25 TCGA-JY-A6FA-01 10 73434919 73434919 T C CDH23 Silent p.S92S 0.30 TCGA-JY-A6FA-01 10 7611724 7611724 C A ITIH5 Missense_Mutation p.V686L 0.30 deleterious(0) possibly_damaging(0.902) TCGA-JY-A6FA-01 10 97786972 97786972 C T CC2D2B Silent p.I281I 0.73 TCGA-JY-A6FA-01 11 10874919 10874919 T A ZBED5 Missense_Mutation p.D525V 0.42 deleterious(0) possibly_damaging(0.596) TCGA-JY-A6FA-01 11 123480972 123480972 G T GRAMD1B Silent p.V472V 0.44 TCGA-JY-A6FA-01 11 21592425 21592425 G A NELL1 Missense_Mutation p.G699D 0.33 tolerated(0.1) probably_damaging(0.956) TCGA-JY-A6FA-01 11 31616430 31616430 G T ELP4 Missense_Mutation p.Q165H 0.43 deleterious(0) probably_damaging(0.994) TCGA-JY-A6FA-01 11 32439125 32439125 C A WT1 Missense_Mutation p.K316N 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-JY-A6FA-01 11 56058051 56058051 C G OR8H1 Missense_Mutation p.S163T 0.44 tolerated(0.15) benign(0.082) TCGA-JY-A6FA-01 11 65766009 65766009 T C EIF1AD 3'UTR 0.44 TCGA-JY-A6FA-01 11 72301270 72301270 T C PDE2A Missense_Mutation p.D241G 0.51 deleterious(0.01) possibly_damaging(0.691) TCGA-JY-A6FA-01 11 788361 788361 G A CEND1 Silent p.L72L 0.53 TCGA-JY-A6FA-01 11 85373850 85373850 A T CREBZF 3'UTR 0.49 TCGA-JY-A6FA-01 12 109526157 109526157 C T ALKBH2 Missense_Mutation p.V214I 0.81 tolerated(0.17) benign(0.009) TCGA-JY-A6FA-01 12 112696393 112696393 A G HECTD4 Missense_Mutation p.L866S 0.83 possibly_damaging(0.879) TCGA-JY-A6FA-01 12 117718602 117718602 G A NOS1 Silent p.L484L 0.34 TCGA-JY-A6FA-01 12 121431999 121431999 C G HNF1A Nonsense_Mutation p.S249* 0.51 TCGA-JY-A6FA-01 12 121432189 121432189 C G HNF1A Silent p.L312L 0.42 TCGA-JY-A6FA-01 12 122763382 122763382 C A CLIP1 Missense_Mutation p.E1291D 0.83 deleterious(0) probably_damaging(0.977) TCGA-JY-A6FA-01 12 49521825 49521825 A G TUBA1B Silent p.D424D 0.21 TCGA-JY-A6FA-01 12 49521828 49521828 T C TUBA1B Silent p.E423E 0.22 TCGA-JY-A6FA-01 12 66638728 66638728 G A IRAK3 Missense_Mutation p.V363I 0.32 deleterious(0.02) possibly_damaging(0.889) TCGA-JY-A6FA-01 13 32839672 32839672 A - FRY Frame_Shift_Del p.E2622Dfs*10 0.29 TCGA-JY-A6FA-01 13 32885527 32885527 T C ZAR1L Missense_Mutation p.E179G 0.45 deleterious(0.05) possibly_damaging(0.462) TCGA-JY-A6FA-01 13 32906495 32906495 G T BRCA2 Nonsense_Mutation p.E294* 0.41 TCGA-JY-A6FA-01 13 33635154 33635154 A C KL Silent p.G646G 0.33 TCGA-JY-A6FA-01 13 36748661 36748661 T A SOHLH2 Missense_Mutation p.Q355L 0.58 deleterious(0) possibly_damaging(0.534) TCGA-JY-A6FA-01 13 76179918 76179918 A G UCHL3 Silent p.R221R 0.64 TCGA-JY-A6FA-01 14 29237215 29237215 C A FOXG1 Missense_Mutation p.R244S 0.79 deleterious(0) probably_damaging(1) TCGA-JY-A6FA-01 14 45397793 45397793 G C KLHL28 3'UTR 0.26 TCGA-JY-A6FA-01 14 58831520 58831520 G C ARID4A Missense_Mutation p.E905Q 0.38 tolerated_low_confidence(0.1) benign(0.089) TCGA-JY-A6FA-01 15 20663127 20663127 T C HERC2P3 RNA 0.31 TCGA-JY-A6FA-01 15 22846926 22846926 G C TUBGCP5 Missense_Mutation p.E267D 0.33 deleterious(0.01) possibly_damaging(0.908) TCGA-JY-A6FA-01 15 31334235 31334235 T G TRPM1 Missense_Mutation p.K686T 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-JY-A6FA-01 15 37101143 37101143 G A C15orf41 3'UTR 0.41 TCGA-JY-A6FA-01 15 41573994 41573994 A T CHP1 3'UTR 0.35 TCGA-JY-A6FA-01 15 45399110 45399110 G A DUOX2 Missense_Mutation p.P584L 0.43 deleterious(0) possibly_damaging(0.535) TCGA-JY-A6FA-01 15 49319599 49319599 C G SECISBP2L Missense_Mutation p.R333T 0.43 deleterious(0) possibly_damaging(0.57) TCGA-JY-A6FA-01 15 50226248 50226248 G C ATP8B4 Silent p.L473L 0.17 TCGA-JY-A6FA-01 15 75759850 75759850 G T PTPN9 3'UTR 0.41 TCGA-JY-A6FA-01 15 88121415 88121416 CA - LINC00052 RNA 0.27 TCGA-JY-A6FA-01 16 28855330 28855330 G - TUFM Frame_Shift_Del p.R339Gfs*46 0.26 TCGA-JY-A6FA-01 16 30495433 30495433 G A ITGAL Splice_Site p.X286_splice 0.32 TCGA-JY-A6FA-01 16 67577003 67577004 - T FAM65A Frame_Shift_Ins p.M792Ifs*32 0.31 TCGA-JY-A6FA-01 16 75573669 75573669 C G TMEM231 3'UTR 0.50 TCGA-JY-A6FA-01 17 21731342 21731342 G A UBBP4 Intron 0.19 TCGA-JY-A6FA-01 17 21731357 21731357 C T UBBP4 Intron 0.26 TCGA-JY-A6FA-01 17 27958092 27958092 C G SSH2 Missense_Mutation p.A1347P 0.27 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-JY-A6FA-01 17 29670040 29670040 T C NF1 Missense_Mutation p.V2359A 0.80 deleterious(0) benign(0.444) TCGA-JY-A6FA-01 17 3591966 3591966 G A P2RX5 Silent p.L281L 0.29 TCGA-JY-A6FA-01 17 40128676 40128676 G A DNAJC7 3'UTR 0.31 TCGA-JY-A6FA-01 17 40466587 40466587 G T STAT3 3'UTR 0.35 TCGA-JY-A6FA-01 17 45364556 45364556 C T ITGB3 Missense_Mutation p.H300Y 0.31 deleterious(0.03) benign(0.141) TCGA-JY-A6FA-01 17 57758783 57758783 T C CLTC Missense_Mutation p.F1065L 0.47 deleterious(0.01) benign(0.265) TCGA-JY-A6FA-01 17 62499111 62499111 C A DDX5 Nonsense_Mutation p.E306* 0.53 TCGA-JY-A6FA-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.82 TCGA-JY-A6FA-01 17 80847552 80847552 C A TBCD Missense_Mutation p.F514L 0.27 deleterious(0) probably_damaging(0.983) TCGA-JY-A6FA-01 18 18529846 18529846 A T ROCK1 3'UTR 0.14 TCGA-JY-A6FA-01 18 74154846 74154846 C T ZNF516 Silent p.K55K 0.23 TCGA-JY-A6FA-01 18 76752159 76752159 C G SALL3 Missense_Mutation p.C56W 0.34 deleterious(0) unknown(0) TCGA-JY-A6FA-01 18 77473021 77473021 G A CTDP1 Missense_Mutation p.E305K 0.42 deleterious(0) probably_damaging(1) TCGA-JY-A6FA-01 19 10254519 10254519 T C DNMT1 Silent p.K1013K 0.45 TCGA-JY-A6FA-01 19 1434963 1434963 G A DAZAP1 3'UTR 0.32 TCGA-JY-A6FA-01 19 15300201 15300201 G T NOTCH3 Missense_Mutation p.P359T 0.43 deleterious(0.02) probably_damaging(1) TCGA-JY-A6FA-01 19 18273933 18273933 C G PIK3R2 Silent p.L422L 0.39 TCGA-JY-A6FA-01 19 20228938 20228938 A T ZNF90 Missense_Mutation p.K192M 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-JY-A6FA-01 19 2254447 2254447 G A JSRP1 Silent p.P48P 0.29 TCGA-JY-A6FA-01 19 3025060 3025060 C G TLE2 Silent p.L84L 0.46 TCGA-JY-A6FA-01 19 33791575 33791575 G C CEBPA 3'UTR 0.36 TCGA-JY-A6FA-01 19 35849910 35849910 G A FFAR3 Missense_Mutation p.V40M 0.16 deleterious(0.05) benign(0.149) TCGA-JY-A6FA-01 19 36211861 36211861 C T KMT2B Missense_Mutation p.R538C 0.41 probably_damaging(0.973) TCGA-JY-A6FA-01 19 40368702 40368702 G A FCGBP Missense_Mutation p.L4216F 0.11 possibly_damaging(0.849) TCGA-JY-A6FA-01 19 41510046 41510046 C T CYP2B6 Silent p.V104V 0.47 TCGA-JY-A6FA-01 19 46299318 46299318 C T RSPH6A Missense_Mutation p.E655K 0.45 tolerated(0.06) benign(0.051) TCGA-JY-A6FA-01 19 49228078 49228078 T C RASIP1 Missense_Mutation p.E756G 0.34 tolerated(0.11) possibly_damaging(0.766) TCGA-JY-A6FA-01 19 49604727 49604727 C T SNRNP70 Silent p.H158H 0.41 TCGA-JY-A6FA-01 19 56162797 56162797 G T CCDC106 Missense_Mutation p.Q154H 0.40 tolerated(0.07) benign(0.444) TCGA-JY-A6FA-01 19 56370074 56370074 C G NLRP4 Missense_Mutation p.L439V 0.34 tolerated(0.3) benign(0.097) TCGA-JY-A6FA-01 19 57744878 57744878 G A AURKC Silent p.V162V 0.36 TCGA-JY-A6FA-01 19 9720818 9720818 G C ZNF561 3'UTR 0.34 TCGA-JY-A6FA-01 1 103352542 103352542 C A COL11A1 Missense_Mutation p.G1560V 0.41 unknown(0) TCGA-JY-A6FA-01 1 109351459 109351459 A G STXBP3 Missense_Mutation p.N580S 0.35 tolerated(0.89) benign(0) TCGA-JY-A6FA-01 1 110589335 110589335 C T STRIP1 Nonsense_Mutation p.Q484* 0.39 TCGA-JY-A6FA-01 1 13001128 13001128 C T PRAMEF6 Silent p.L185L 0.28 TCGA-JY-A6FA-01 1 158576363 158576363 T A OR10Z1 Silent p.I45I 0.31 TCGA-JY-A6FA-01 1 159176230 159176230 G A DARC Missense_Mutation p.S336N 0.24 tolerated(0.06) benign(0.15) TCGA-JY-A6FA-01 1 159176231 159176231 C A DARC Missense_Mutation p.S336R 0.25 tolerated(0.08) benign(0.007) TCGA-JY-A6FA-01 1 175096207 175096207 G C TNN Missense_Mutation p.D1011H 0.33 deleterious(0) probably_damaging(0.976) TCGA-JY-A6FA-01 1 206760161 206760162 - A RASSF5 Frame_Shift_Ins p.D370Efs*7 0.22 TCGA-JY-A6FA-01 1 206761653 206761653 T A RASSF5 3'Flank 0.44 TCGA-JY-A6FA-01 1 206943229 206943229 A G IL10 Missense_Mutation p.L130P 0.58 deleterious(0) probably_damaging(1) TCGA-JY-A6FA-01 1 216073502 216073502 G A USH2A Silent p.Y2503Y 0.42 TCGA-JY-A6FA-01 1 23408804 23408804 A G KDM1A Missense_Mutation p.Y797C 0.36 deleterious(0) probably_damaging(1) TCGA-JY-A6FA-01 1 23686276 23686276 T C ZNF436 3'UTR 0.39 TCGA-JY-A6FA-01 1 236889280 236889280 G T ACTN2 Missense_Mutation p.A166S 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-JY-A6FA-01 1 244219732 244219732 T A ZBTB18 3'UTR 0.32 TCGA-JY-A6FA-01 1 27088764 27088764 C A ARID1A Missense_Mutation p.N791K 0.42 unknown(0) TCGA-JY-A6FA-01 1 27216997 27216997 T A GPATCH3 3'UTR 0.45 TCGA-JY-A6FA-01 1 39823313 39823313 G A MACF1 Silent p.E1835E 0.35 TCGA-JY-A6FA-01 1 82421722 82421722 C G LPHN2 Silent p.V648V 0.40 TCGA-JY-A6FA-01 20 52184614 52184614 T C ZNF217 3'UTR 0.63 TCGA-JY-A6FA-01 20 56179817 56179817 G A ZBP1 Missense_Mutation p.P368S 0.49 tolerated(0.47) benign(0.007) TCGA-JY-A6FA-01 21 30909427 30909427 C T GRIK1 3'UTR 0.46 TCGA-JY-A6FA-01 21 43305835 43305835 C T C2CD2 3'UTR 0.50 TCGA-JY-A6FA-01 21 46897715 46897715 C T COL18A1 Missense_Mutation p.R533W 0.44 unknown(0) TCGA-JY-A6FA-01 22 21363916 21363916 A G AC002472.1 5'Flank 0.46 TCGA-JY-A6FA-01 22 39527231 39527231 T A CBX7 3'UTR 0.33 TCGA-JY-A6FA-01 2 135714570 135714570 A T CCNT2 3'UTR 0.58 TCGA-JY-A6FA-01 2 185803054 185803054 G C ZNF804A Missense_Mutation p.E977D 0.62 tolerated(0.05) probably_damaging(0.935) TCGA-JY-A6FA-01 2 203430435 203430440 CTACAT - BMPR2 3'UTR 0.86 TCGA-JY-A6FA-01 2 226447490 226447490 A G NYAP2 Missense_Mutation p.R453G 0.06 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FA-01 2 241679744 241679744 G T KIF1A Missense_Mutation p.P1263T 0.74 deleterious(0.03) probably_damaging(1) TCGA-JY-A6FA-01 2 27459359 27459359 A G CAD Missense_Mutation p.I1428V 0.37 deleterious(0.01) benign(0.102) TCGA-JY-A6FA-01 2 3593197 3593197 T C RNASEH1 3'UTR 0.83 TCGA-JY-A6FA-01 2 56097965 56097965 T A EFEMP1 Missense_Mutation p.R404W 0.31 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FA-01 3 129247687 129247687 C A RHO Missense_Mutation p.F37L 0.31 deleterious(0.02) possibly_damaging(0.474) TCGA-JY-A6FA-01 3 164907755 164907755 C A SLITRK3 Missense_Mutation p.E288D 0.50 tolerated(0.24) probably_damaging(0.984) TCGA-JY-A6FA-01 3 167401716 167401716 T C PDCD10 3'UTR 0.12 TCGA-JY-A6FA-01 3 172116120 172116120 C A FNDC3B 3'UTR 0.09 TCGA-JY-A6FA-01 3 174814895 174814895 G A NAALADL2 Missense_Mutation p.C120Y 0.10 tolerated(0.97) benign(0.023) TCGA-JY-A6FA-01 3 180334633 180334633 A C CCDC39 Nonsense_Mutation p.L796* 0.21 TCGA-JY-A6FA-01 3 182871996 182871996 G A LAMP3 Missense_Mutation p.A78V 0.10 tolerated(0.16) benign(0.148) TCGA-JY-A6FA-01 3 183209898 183209898 G C KLHL6 Nonsense_Mutation p.Y561* 0.31 TCGA-JY-A6FA-01 3 183472028 183472029 - T YEATS2 Frame_Shift_Ins p.G423Wfs*22 0.13 TCGA-JY-A6FA-01 3 183702524 183702524 G A ABCC5 Intron 0.21 TCGA-JY-A6FA-01 3 42727547 42727547 C T KLHL40 Missense_Mutation p.A146V 0.48 deleterious(0.01) possibly_damaging(0.523) TCGA-JY-A6FA-01 3 49699718 49699718 C A BSN Silent p.G3480G 0.77 TCGA-JY-A6FA-01 3 8677462 8677492 CAGTCATAGCTGGGCAGTCTCTCCAGGAGCT - SSUH2 Frame_Shift_Del p.E27Gfs*38 0.72 TCGA-JY-A6FA-01 4 103184318 103184318 C T SLC39A8 Silent p.K422K 0.68 TCGA-JY-A6FA-01 4 155505175 155505176 - TT FGA 3'UTR 0.45 TCGA-JY-A6FA-01 4 46263847 46263864 GATGTCTTTAATGTCAGT TCTTTAATGTCAGGA GABRA2 Intron 0.70 TCGA-JY-A6FA-01 4 53463586 53463586 C G USP46 3'UTR 0.16 TCGA-JY-A6FA-01 4 71201456 71201456 C G CABS1 Missense_Mutation p.L234V 0.32 tolerated(0.15) possibly_damaging(0.899) TCGA-JY-A6FA-01 4 77661188 77661188 G A SHROOM3 Missense_Mutation p.R621K 0.23 tolerated(0.21) benign(0.007) TCGA-JY-A6FA-01 4 85731437 85731437 C T WDFY3 Missense_Mutation p.G650R 0.34 deleterious(0) probably_damaging(1) TCGA-JY-A6FA-01 4 94376819 94376819 G C GRID2 Missense_Mutation p.D518H 0.76 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FA-01 5 118970255 118970255 T C FAM170A Missense_Mutation p.M271T 0.27 tolerated(0.1) benign(0.033) TCGA-JY-A6FA-01 5 134907182 134907182 G T CXCL14 3'UTR 0.31 TCGA-JY-A6FA-01 5 143854159 143854159 C A KCTD16 3'UTR 0.30 TCGA-JY-A6FA-01 5 14769140 14769140 G A ANKH Missense_Mutation p.A86V 0.58 tolerated(0.45) probably_damaging(0.998) TCGA-JY-A6FA-01 5 161300308 161300308 G A GABRA1 Silent p.R147R 0.08 TCGA-JY-A6FA-01 5 161300309 161300309 A T GABRA1 Missense_Mutation p.I148F 0.08 deleterious(0.03) possibly_damaging(0.528) TCGA-JY-A6FA-01 5 17276654 17276654 T C BASP1 3'UTR 0.63 TCGA-JY-A6FA-01 5 31323519 31323519 C A CDH6 3'UTR 0.23 TCGA-JY-A6FA-01 5 41307118 41307118 A T PLCXD3 3'UTR 0.24 TCGA-JY-A6FA-01 5 6372690 6372690 C T MED10 Missense_Mutation p.E112K 0.27 tolerated(0.06) benign(0.315) TCGA-JY-A6FA-01 5 878475 878475 C T BRD9 Silent p.A422A 0.33 TCGA-JY-A6FA-01 6 106553478 106553478 G A PRDM1 Silent p.P481P 0.70 TCGA-JY-A6FA-01 6 132059220 132059220 A G ENPP3 Silent p.E739E 0.37 TCGA-JY-A6FA-01 6 143749461 143749461 G A ADAT2 3'UTR 0.47 TCGA-JY-A6FA-01 6 146708117 146708117 G T GRM1 Missense_Mutation p.C565F 0.15 deleterious(0.03) probably_damaging(0.999) TCGA-JY-A6FA-01 6 158735106 158735106 C T TULP4 Silent p.L20L 0.37 TCGA-JY-A6FA-01 6 17615773 17615773 G A NUP153 3'UTR 0.22 TCGA-JY-A6FA-01 6 25913642 25913642 G A SLC17A2 Silent p.L398L 0.29 TCGA-JY-A6FA-01 6 27775992 27775992 C A HIST1H2AI Missense_Mutation p.S2Y 0.20 deleterious_low_confidence(0) benign(0.184) TCGA-JY-A6FA-01 6 4073518 4073518 A G FAM217A Missense_Mutation p.I98T 0.28 tolerated(0.94) benign(0.002) TCGA-JY-A6FA-01 6 80878608 80878608 C T BCKDHB Missense_Mutation p.A165V 0.50 deleterious(0) probably_damaging(0.978) TCGA-JY-A6FA-01 6 90384069 90384069 A - MDN1 Frame_Shift_Del p.L4334Rfs*14 0.10 TCGA-JY-A6FA-01 7 116596724 116596724 T C ST7-OT4 Missense_Mutation p.L106P 0.58 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-JY-A6FA-01 7 141942747 141942747 G T MOXD2P RNA 0.37 TCGA-JY-A6FA-01 7 148638591 148638591 G T RNY5 RNA 0.29 TCGA-JY-A6FA-01 7 20744391 20744391 G C ABCB5 Missense_Mutation p.L794F 0.23 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FA-01 7 34971135 34971135 T G DPY19L1 3'UTR 0.28 TCGA-JY-A6FA-01 7 5414008 5414008 C A TNRC18 Silent p.G969G 0.12 TCGA-JY-A6FA-01 7 72281191 72281191 C T TYW1B Missense_Mutation p.E100K 0.38 deleterious(0.04) probably_damaging(0.986) TCGA-JY-A6FA-01 7 77585121 77585121 A G PHTF2 3'UTR 0.39 TCGA-JY-A6FA-01 7 91851268 91851268 G A KRIT1 Missense_Mutation p.P504L 0.23 deleterious(0) benign(0.305) TCGA-JY-A6FA-01 8 124988147 124988147 G C FER1L6 Missense_Mutation p.L231F 0.42 deleterious(0) probably_damaging(1) TCGA-JY-A6FA-01 8 1497582 1497582 C T DLGAP2 Silent p.G241G 0.78 TCGA-JY-A6FA-01 8 27320896 27320896 C T CHRNA2 Missense_Mutation p.R355H 0.79 deleterious(0) probably_damaging(1) TCGA-JY-A6FA-01 8 32618077 32618077 C T NRG1 Intron 1.00 TCGA-JY-A6FA-01 8 57354245 57354245 C G PENK Missense_Mutation p.E130D 0.30 tolerated(0.1) benign(0.071) TCGA-JY-A6FA-01 8 77779442 77779442 G A ZFHX4 3'UTR 0.38 TCGA-JY-A6FA-01 9 108210341 108210341 C T FSD1L 5'Flank 0.35 TCGA-JY-A6FA-01 9 135782727 135782727 G C TSC1 Missense_Mutation p.L432V 0.42 tolerated(0.17) benign(0.078) TCGA-JY-A6FA-01 9 136260761 136260761 G A C9orf96 Missense_Mutation p.R246H 0.45 deleterious(0.03) possibly_damaging(0.485) TCGA-JY-A6FA-01 9 139103122 139103122 C T QSOX2 Missense_Mutation p.G513S 0.11 tolerated(1) benign(0.01) TCGA-JY-A6FA-01 9 139298600 139298600 C T SDCCAG3 Missense_Mutation p.G372D 0.53 deleterious(0.03) benign(0.366) TCGA-JY-A6FA-01 9 15307166 15307166 C G TTC39B Missense_Mutation p.E52D 0.65 tolerated_low_confidence(0.42) benign(0.007) TCGA-JY-A6FA-01 9 98278926 98278926 G C RP11-435O5.4 3'Flank 0.77 TCGA-JY-A6FA-01 X 102317850 102317850 T G BEX1 Missense_Mutation p.H118P 0.47 deleterious(0) probably_damaging(0.945) TCGA-JY-A6FA-01 X 153095904 153095904 G A PDZD4 5'UTR 0.77 TCGA-JY-A6FA-01 X 30747192 30747192 C T GK 3'UTR 0.75 TCGA-JY-A6FA-01 X 49028406 49028406 C T PLP2 Missense_Mutation p.S20L 0.73 tolerated(0.95) benign(0.003) TCGA-JY-A6FA-01 X 69353781 69353781 G T IGBP1 5'UTR 0.30 TCGA-JY-A6FB-01 10 105659926 105659927 - TGTA OBFC1 Frame_Shift_Ins p.Q117Hfs*6 0.23 TCGA-JY-A6FB-01 10 11527902 11527903 - A USP6NL Frame_Shift_Ins p.V242Cfs*6 0.14 TCGA-JY-A6FB-01 10 127753405 127753405 C T ADAM12 Missense_Mutation p.E530K 0.27 tolerated(0.07) probably_damaging(0.981) TCGA-JY-A6FB-01 10 13702382 13702382 C T FRMD4A Nonsense_Mutation p.W611* 0.24 TCGA-JY-A6FB-01 10 48382047 48382047 G A RBP3 Missense_Mutation p.S1201L 0.42 tolerated(0.37) benign(0.001) TCGA-JY-A6FB-01 10 68535271 68535271 T - CTNNA3 Frame_Shift_Del p.E354Kfs*6 0.19 TCGA-JY-A6FB-01 10 81075539 81075539 G T ZMIZ1 3'UTR 0.18 TCGA-JY-A6FB-01 10 96030324 96030324 T C PLCE1 Silent p.L1491L 0.25 TCGA-JY-A6FB-01 11 120744855 120744855 C T GRIK4 Silent p.G329G 0.76 TCGA-JY-A6FB-01 11 122742466 122742466 T A CRTAM 3'UTR 0.22 TCGA-JY-A6FB-01 11 130289037 130289037 G A ADAMTS8 Missense_Mutation p.R291C 0.54 deleterious(0) probably_damaging(1) TCGA-JY-A6FB-01 11 2192950 2192950 C T TH Missense_Mutation p.A23T 0.40 tolerated_low_confidence(0.17) benign(0.021) TCGA-JY-A6FB-01 11 30914471 30914471 T C DCDC1 Missense_Mutation p.K1656R 0.54 tolerated_low_confidence(0.2) benign(0) TCGA-JY-A6FB-01 11 5221149 5221149 T C OR51V1 Missense_Mutation p.Y261C 0.05 deleterious(0) probably_damaging(1) TCGA-JY-A6FB-01 11 62886453 62886453 G A SLC22A24 Missense_Mutation p.A254V 0.55 tolerated(0.37) benign(0.141) TCGA-JY-A6FB-01 11 66460503 66460503 C T SPTBN2 Silent p.A1641A 0.32 TCGA-JY-A6FB-01 11 89224522 89224522 G A NOX4 5'UTR 0.43 TCGA-JY-A6FB-01 11 94730497 94730497 C G KDM4D 5'UTR 0.19 TCGA-JY-A6FB-01 12 124819756 124819756 C T NCOR2 Silent p.S2112S 0.12 TCGA-JY-A6FB-01 12 132625486 132625486 G A DDX51 Silent p.L444L 0.50 TCGA-JY-A6FB-01 12 51455009 51455009 T C CSRNP2 3'UTR 0.25 TCGA-JY-A6FB-01 12 54406483 54406483 C T HOXC8 3'UTR 0.42 TCGA-JY-A6FB-01 12 55726109 55726109 G A OR6C3 Missense_Mutation p.A209T 0.51 tolerated_low_confidence(0.29) benign(0.069) TCGA-JY-A6FB-01 12 56815969 56815969 G A TIMELESS Silent p.S815S 0.57 TCGA-JY-A6FB-01 12 57872895 57872895 C T ARHGAP9 Missense_Mutation p.G99S 0.25 tolerated(1) benign(0.001) TCGA-JY-A6FB-01 13 95121153 95121153 C T DCT Missense_Mutation p.A148T 0.12 deleterious(0) possibly_damaging(0.711) TCGA-JY-A6FB-01 14 23874914 23874914 G A MYH6 Silent p.D89D 0.36 TCGA-JY-A6FB-01 14 24662056 24662056 G A TM9SF1 Silent p.V255V 0.50 TCGA-JY-A6FB-01 14 39651212 39651212 C G PNN 3'UTR 0.38 TCGA-JY-A6FB-01 14 47309253 47309253 G A MDGA2 3'UTR 0.65 TCGA-JY-A6FB-01 14 94770680 94770680 C T SERPINA6 3'UTR 0.58 TCGA-JY-A6FB-01 14 96671143 96671143 C T BDKRB2 5'UTR 0.20 TCGA-JY-A6FB-01 14 99723818 99723818 C T BCL11B Silent p.E139E 0.55 TCGA-JY-A6FB-01 15 22382670 22382670 G T OR4N4 Missense_Mutation p.L66F 0.19 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FB-01 15 27765251 27765251 G A GABRG3 Silent p.T282T 0.43 TCGA-JY-A6FB-01 15 28408276 28408276 G A HERC2 Silent p.S3570S 0.55 TCGA-JY-A6FB-01 15 28463812 28463812 C T HERC2 Missense_Mutation p.E1951K 0.44 possibly_damaging(0.771) TCGA-JY-A6FB-01 15 40501908 40501908 C T BUB1B Missense_Mutation p.A739V 0.22 tolerated(0.1) benign(0.003) TCGA-JY-A6FB-01 15 41870293 41870293 C T TYRO3 Missense_Mutation p.A831V 0.26 tolerated(0.3) benign(0.005) TCGA-JY-A6FB-01 15 42983271 42983271 A T STARD9 Missense_Mutation p.E3165D 0.12 benign(0.117) TCGA-JY-A6FB-01 15 66791958 66791958 T G RPL4 Silent p.A357A 0.37 TCGA-JY-A6FB-01 15 71433805 71433805 C T THSD4 5'UTR 0.45 TCGA-JY-A6FB-01 15 83218339 83218340 - G CPEB1 Frame_Shift_Ins p.S424Qfs*16 0.27 TCGA-JY-A6FB-01 16 15045675 15045675 G A NPIPA1 Silent p.A282A 0.08 TCGA-JY-A6FB-01 16 1817269 1817269 G C MAPK8IP3 Missense_Mutation p.V1069L 0.30 deleterious(0) probably_damaging(0.947) TCGA-JY-A6FB-01 16 2240120 2240120 G A CASKIN1 Silent p.S66S 0.10 TCGA-JY-A6FB-01 16 32893871 32893871 G A RP11-989E6.3 5'Flank 0.13 TCGA-JY-A6FB-01 16 3454853 3454853 A G ZNF174 Intron 0.22 TCGA-JY-A6FB-01 16 5078948 5078948 G A NAGPA Silent p.L285L 0.08 TCGA-JY-A6FB-01 16 53503977 53503977 G C RBL2 Missense_Mutation p.V709L 0.40 tolerated(0.29) benign(0.001) TCGA-JY-A6FB-01 16 597573 597573 G A CAPN15 Silent p.P245P 0.14 TCGA-JY-A6FB-01 16 71679088 71679088 C T PHLPP2 3'UTR 0.22 TCGA-JY-A6FB-01 16 81183400 81183400 C T PKD1L2 RNA 0.28 TCGA-JY-A6FB-01 17 14248498 14248498 G A HS3ST3B1 Silent p.S236S 0.59 TCGA-JY-A6FB-01 17 1839435 1839435 C T RTN4RL1 3'UTR 0.78 TCGA-JY-A6FB-01 17 50235352 50235352 C T CA10 5'UTR 0.25 TCGA-JY-A6FB-01 17 60020030 60020030 T A MED13 3'UTR 0.07 TCGA-JY-A6FB-01 17 62521951 62521951 C G CEP95 Missense_Mutation p.P325A 0.19 tolerated(0.76) benign(0.167) TCGA-JY-A6FB-01 17 64024488 64024488 G C CEP112 Silent p.V513V 0.14 TCGA-JY-A6FB-01 17 64025255 64025255 G C CEP112 Missense_Mutation p.L497V 0.11 tolerated(0.22) benign(0.014) TCGA-JY-A6FB-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.58 deleterious(0) probably_damaging(1) TCGA-JY-A6FB-01 17 80202572 80202572 C A CSNK1D 3'UTR 0.25 TCGA-JY-A6FB-01 18 23598109 23598109 G C SS18 3'UTR 0.39 TCGA-JY-A6FB-01 18 32916224 32916225 - A ZNF24 3'UTR 0.08 TCGA-JY-A6FB-01 18 42643578 42643578 C T SETBP1 Missense_Mutation p.P1569L 0.40 tolerated_low_confidence(0.35) benign(0) TCGA-JY-A6FB-01 18 48703496 48703496 T C MEX3C Missense_Mutation p.N402S 0.32 tolerated(0.21) benign(0.046) TCGA-JY-A6FB-01 18 51025708 51025708 G T DCC Silent p.L1313L 0.27 TCGA-JY-A6FB-01 18 55365039 55365040 - T ATP8B1 Frame_Shift_Ins p.N205Kfs*2 0.30 TCGA-JY-A6FB-01 18 56939807 56939807 C T RAX Missense_Mutation p.R110Q 0.16 tolerated(0.13) benign(0.005) TCGA-JY-A6FB-01 18 6948417 6948417 C T LAMA1 Missense_Mutation p.G2899R 0.36 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FB-01 19 11134230 11134230 C T SMARCA4 Missense_Mutation p.R966W 0.62 probably_damaging(0.998) TCGA-JY-A6FB-01 19 15220160 15220160 C T SYDE1 Missense_Mutation p.P128S 0.42 tolerated(0.52) benign(0) TCGA-JY-A6FB-01 19 15769357 15769357 G A CYP4F3 Missense_Mutation p.D436N 0.55 tolerated(0.52) benign(0.075) TCGA-JY-A6FB-01 19 33791723 33791723 C T CEBPA 3'UTR 0.28 TCGA-JY-A6FB-01 19 49130954 49130960 ACCCCTG - SPHK2 Frame_Shift_Del p.P174Cfs*32 0.13 TCGA-JY-A6FB-01 19 50970954 50970954 G A FAM71E1 Silent p.F208F 0.32 TCGA-JY-A6FB-01 19 51629013 51629013 G A SIGLEC9 Missense_Mutation p.R194H 0.24 tolerated(0.58) benign(0.019) TCGA-JY-A6FB-01 19 6001944 6001944 G C RFX2 Missense_Mutation p.L581V 0.19 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FB-01 19 9059772 9059772 A G MUC16 Missense_Mutation p.M9225T 0.16 unknown(0) TCGA-JY-A6FB-01 1 112026295 112026295 A T ADORA3 3'UTR 0.08 TCGA-JY-A6FB-01 1 158517559 158517559 C G OR6Y1 Missense_Mutation p.V113L 0.64 tolerated(0.15) benign(0.271) TCGA-JY-A6FB-01 1 160535365 160535365 C T CD84 Missense_Mutation p.V73I 0.08 tolerated(0.23) benign(0) TCGA-JY-A6FB-01 1 166810311 166810311 T C POGK Missense_Mutation p.S40P 0.83 deleterious_low_confidence(0.01) benign(0.193) TCGA-JY-A6FB-01 1 181769513 181769513 T C CACNA1E 3'Flank 0.83 TCGA-JY-A6FB-01 1 2116604 2116604 G T PRKCZ 3'UTR 0.57 TCGA-JY-A6FB-01 1 22222693 22222694 - TCCT HSPG2 Frame_Shift_Ins p.D58Efs*6 0.54 TCGA-JY-A6FB-01 1 242271092 242271092 G A PLD5 Nonsense_Mutation p.R374* 0.78 TCGA-JY-A6FB-01 1 2542738 2542738 G A MMEL1 Missense_Mutation p.P92S 0.47 tolerated(0.25) benign(0.082) TCGA-JY-A6FB-01 1 27426042 27426043 AT - SLC9A1 3'UTR 0.16 TCGA-JY-A6FB-01 1 89525079 89525079 C T GBP1 Missense_Mutation p.A117T 0.64 tolerated(0.07) benign(0.039) TCGA-JY-A6FB-01 20 60883828 60883828 G A ADRM1 3'UTR 0.65 TCGA-JY-A6FB-01 21 15596828 15596828 A G RBM11 Silent p.L134L 0.38 TCGA-JY-A6FB-01 21 45706439 45706439 G T AIRE Splice_Site p.X45_splice 0.20 TCGA-JY-A6FB-01 22 45580875 45580875 G T NUP50 3'UTR 0.25 TCGA-JY-A6FB-01 2 131805699 131805699 A T FAM168B 3'UTR 0.29 TCGA-JY-A6FB-01 2 167279908 167279908 G TA SCN7A Frame_Shift_Ins p.T963Ifs*3 0.24 TCGA-JY-A6FB-01 2 180047847 180047847 C A SESTD1 Nonsense_Mutation p.E42* 0.35 TCGA-JY-A6FB-01 2 211515163 211515163 G T CPS1 Splice_Site p.X1166_splice 0.21 TCGA-JY-A6FB-01 2 220083263 220083263 C T ABCB6 Missense_Mutation p.V45M 0.18 tolerated(0.21) benign(0.01) TCGA-JY-A6FB-01 2 242743043 242743043 G A GAL3ST2 Missense_Mutation p.R220H 0.28 tolerated(0.15) benign(0.075) TCGA-JY-A6FB-01 2 27603102 27603102 G A ZNF513 Silent p.D23D 0.29 TCGA-JY-A6FB-01 2 29169682 29169682 T G WDR43 3'UTR 0.09 TCGA-JY-A6FB-01 2 31569643 31569643 C A XDH Nonsense_Mutation p.E1115* 0.15 TCGA-JY-A6FB-01 3 129286546 129286546 C T PLXND1 Missense_Mutation p.R1323H 0.24 deleterious(0) probably_damaging(0.993) TCGA-JY-A6FB-01 3 135869254 135869254 C T MSL2 3'UTR 0.25 TCGA-JY-A6FB-01 3 187388067 187388067 G A SST Missense_Mutation p.R5C 0.31 deleterious(0) possibly_damaging(0.877) TCGA-JY-A6FB-01 3 190367368 190367368 G T IL1RAP Intron 0.18 TCGA-JY-A6FB-01 3 38913192 38913194 ACC - SCN11A In_Frame_Del p.V1168del 0.43 TCGA-JY-A6FB-01 3 45776840 45776840 G A SACM1L Missense_Mutation p.R405H 0.25 tolerated(0.06) benign(0.052) TCGA-JY-A6FB-01 3 52818344 52818344 G A ITIH1 Missense_Mutation p.V420I 0.40 tolerated(0.38) benign(0.05) TCGA-JY-A6FB-01 4 152020849 152020849 G A RPS3A Silent p.K15K 0.23 TCGA-JY-A6FB-01 4 15529096 15529096 G A CC2D2A Silent p.Q392Q 0.28 TCGA-JY-A6FB-01 4 17524614 17524614 G A CLRN2 Silent p.P127P 0.21 TCGA-JY-A6FB-01 4 41985273 41985273 T C DCAF4L1 3'UTR 0.31 TCGA-JY-A6FB-01 4 71640912 71640912 C T RUFY3 Silent p.D262D 0.30 TCGA-JY-A6FB-01 4 76857253 76857253 G A NAAA Intron 0.39 TCGA-JY-A6FB-01 4 941669 941669 G A TMEM175 Missense_Mutation p.A48T 0.39 deleterious(0) probably_damaging(1) TCGA-JY-A6FB-01 5 140475148 140475148 C T PCDHB2 Silent p.P258P 0.19 TCGA-JY-A6FB-01 5 154397191 154397192 - T KIF4B 3'UTR 0.21 TCGA-JY-A6FB-01 5 53839223 53839223 G A SNX18 Silent p.Q612Q 0.07 TCGA-JY-A6FB-01 6 152718109 152718109 A C SYNE1 Missense_Mutation p.L2453V 0.21 possibly_damaging(0.507) TCGA-JY-A6FB-01 6 157525018 157525018 G A ARID1B Missense_Mutation p.R1638H 0.43 probably_damaging(0.997) TCGA-JY-A6FB-01 6 28227844 28227844 A G NKAPL Missense_Mutation p.K232R 0.07 tolerated(0.33) unknown(0) TCGA-JY-A6FB-01 6 34101143 34101143 C T GRM4 Missense_Mutation p.R44H 0.41 deleterious(0.04) probably_damaging(0.996) TCGA-JY-A6FB-01 6 39282548 39282548 G A KCNK16 3'Flank 0.38 TCGA-JY-A6FB-01 6 70856587 70856587 G A COL19A1 Missense_Mutation p.G603R 0.21 deleterious(0) probably_damaging(1) TCGA-JY-A6FB-01 6 99284669 99284669 G A POU3F2 3'UTR 0.11 TCGA-JY-A6FB-01 7 100803942 100803942 G A AP1S1 3'UTR 0.28 TCGA-JY-A6FB-01 7 111428768 111428768 C T DOCK4 Silent p.L1117L 0.51 TCGA-JY-A6FB-01 7 131870107 131870107 C T PLXNA4 Missense_Mutation p.V1037M 0.60 tolerated(0.1) benign(0.006) TCGA-JY-A6FB-01 7 142574510 142574510 G T TRPV6 Silent p.R190R 0.19 TCGA-JY-A6FB-01 7 22532994 22532994 G A STEAP1B Silent p.Y182Y 0.10 TCGA-JY-A6FB-01 7 2412354 2412354 T C EIF3B Silent p.A578A 0.21 TCGA-JY-A6FB-01 7 89976069 89976069 G A GTPBP10 Missense_Mutation p.S5N 0.62 deleterious(0.03) benign(0.174) TCGA-JY-A6FB-01 8 10555282 10555282 G A C8orf74 Missense_Mutation p.V139I 0.27 tolerated(0.17) benign(0.422) TCGA-JY-A6FB-01 8 130762331 130762331 G T GSDMC Missense_Mutation p.P373H 0.32 tolerated(0.27) probably_damaging(0.997) TCGA-JY-A6FB-01 8 144802413 144802413 C T MAPK15 Silent p.L245L 0.29 TCGA-JY-A6FB-01 8 144889149 144889149 A G SCRIB Missense_Mutation p.L738P 0.09 probably_damaging(0.999) TCGA-JY-A6FB-01 8 42919258 42919258 G A FNTA Missense_Mutation p.D101N 0.28 tolerated(0.05) benign(0.414) TCGA-JY-A6FB-01 8 42919288 42919288 G A FNTA Missense_Mutation p.E111K 0.29 deleterious(0) probably_damaging(0.989) TCGA-JY-A6FB-01 8 94935236 94935236 C T PDP1 Nonsense_Mutation p.Q342* 0.15 TCGA-JY-A6FB-01 9 130289517 130289517 G A FAM129B Missense_Mutation p.L91F 0.28 tolerated(0.23) benign(0.026) TCGA-JY-A6FB-01 9 139905491 139905491 G A ABCA2 Missense_Mutation p.A1997V 0.47 tolerated(0.25) benign(0.102) TCGA-JY-A6FB-01 9 37745111 37745111 G T FRMPD1 Missense_Mutation p.A1028S 0.67 tolerated_low_confidence(0.41) benign(0.039) TCGA-JY-A6FB-01 X 110644499 110644499 C A DCX Missense_Mutation p.V223F 0.86 tolerated(0.07) benign(0.109) TCGA-JY-A6FB-01 X 139037925 139037925 C T CXorf66 3'UTR 0.80 TCGA-JY-A6FB-01 X 1428408 1428408 G A CSF2RA 3'UTR 0.35 TCGA-JY-A6FB-01 X 144910759 144910759 C A TMEM257 3'UTR 0.37 TCGA-JY-A6FB-01 X 54223864 54223864 T - WNK3 3'UTR 0.38 TCGA-JY-A6FB-01 X 70147403 70147403 C T SLC7A3 Missense_Mutation p.V372I 0.94 tolerated(0.4) benign(0.021) TCGA-JY-A6FB-01 X 75648431 75648431 C T MAGEE1 Silent p.L36L 0.73 TCGA-JY-A6FB-01 X 90692825 90692825 C A PABPC5 3'UTR 0.78 TCGA-JY-A6FB-01 Y 15417345 15417345 C G UTY Missense_Mutation p.G1070R 0.55 deleterious(0.01) probably_damaging(0.953) TCGA-JY-A6FD-01 10 101658499 101658499 C G DNMBP Splice_Site p.X907_splice 0.16 TCGA-JY-A6FD-01 10 101835810 101835810 C T CPN1 Missense_Mutation p.R93H 0.25 deleterious(0) probably_damaging(1) TCGA-JY-A6FD-01 10 102241743 102241743 G C WNT8B Missense_Mutation p.D148H 0.17 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FD-01 10 105830296 105830296 G C COL17A1 Silent p.L165L 0.16 TCGA-JY-A6FD-01 10 107024793 107024793 T A SORCS3 3'UTR 0.20 TCGA-JY-A6FD-01 10 10986282 10986282 T G LINC00710 RNA 0.29 TCGA-JY-A6FD-01 10 118354274 118354274 C G PNLIPRP1 Missense_Mutation p.I121M 0.20 deleterious(0) possibly_damaging(0.795) TCGA-JY-A6FD-01 10 124396806 124396806 C T DMBT1 Missense_Mutation p.S2178L 0.17 tolerated(0.06) benign(0.04) TCGA-JY-A6FD-01 10 124516322 124516322 C T DMBT1P1 RNA 0.23 TCGA-JY-A6FD-01 10 18830178 18830178 C T CACNB2 3'Flank 0.18 TCGA-JY-A6FD-01 10 38344263 38344263 A T ZNF33A Missense_Mutation p.Q404L 0.20 deleterious(0.05) probably_damaging(0.999) TCGA-JY-A6FD-01 10 51768798 51768798 G A AGAP6 Missense_Mutation p.V305I 0.18 deleterious(0.03) probably_damaging(0.984) TCGA-JY-A6FD-01 10 74684045 74684045 C T OIT3 Missense_Mutation p.P337L 0.30 deleterious(0) probably_damaging(0.971) TCGA-JY-A6FD-01 10 78778787 78778787 C A KCNMA1 Missense_Mutation p.A667S 0.16 tolerated(0.08) possibly_damaging(0.809) TCGA-JY-A6FD-01 10 81319210 81319210 G A SFTPA2 Silent p.L10L 0.27 TCGA-JY-A6FD-01 11 103055753 103055753 G A DYNC2H1 Missense_Mutation p.M2202I 0.26 benign(0) TCGA-JY-A6FD-01 11 117098032 117098032 C T PCSK7 Missense_Mutation p.E204K 0.29 tolerated(0.21) benign(0.402) TCGA-JY-A6FD-01 11 119545303 119545303 C T PVRL1 Intron 0.23 TCGA-JY-A6FD-01 11 119545984 119545984 C G PVRL1 Missense_Mutation p.Q296H 0.28 deleterious(0.03) possibly_damaging(0.545) TCGA-JY-A6FD-01 11 22400825 22400825 C A SLC17A6 3'UTR 0.21 TCGA-JY-A6FD-01 11 4608080 4608080 T C OR52I2 Missense_Mutation p.I13T 0.13 deleterious_low_confidence(0.02) benign(0.007) TCGA-JY-A6FD-01 11 67934523 67934523 C T SUV420H1 Missense_Mutation p.S367N 0.19 tolerated(0.07) benign(0.013) TCGA-JY-A6FD-01 11 73104900 73104900 G A RELT Missense_Mutation p.R215Q 0.12 tolerated(0.56) possibly_damaging(0.494) TCGA-JY-A6FD-01 11 73753117 73753117 G C C2CD3 Missense_Mutation p.S1881C 0.27 deleterious(0.01) probably_damaging(0.967) TCGA-JY-A6FD-01 11 75274698 75274698 C G SERPINH1 5'UTR 0.25 TCGA-JY-A6FD-01 12 11286714 11286714 C G TAS2R30 Missense_Mutation p.V44L 0.26 deleterious(0.03) benign(0.061) TCGA-JY-A6FD-01 12 113824744 113824744 C T PLBD2 Missense_Mutation p.S430F 0.35 tolerated(0.23) benign(0.004) TCGA-JY-A6FD-01 12 369020 369020 C T SLC6A13 Missense_Mutation p.G67R 0.09 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FD-01 12 49422901 49422901 G A KMT2D Nonsense_Mutation p.Q4732* 0.20 TCGA-JY-A6FD-01 12 49422902 49422902 C A KMT2D Missense_Mutation p.E4731D 0.20 unknown(0) TCGA-JY-A6FD-01 12 54767829 54767829 C T ZNF385A Missense_Mutation p.V117I 0.26 tolerated(0.18) benign(0.003) TCGA-JY-A6FD-01 12 69202252 69202252 C T MDM2 5'UTR 0.22 TCGA-JY-A6FD-01 12 8201390 8201390 C T FOXJ2 Silent p.F441F 0.21 TCGA-JY-A6FD-01 13 24443488 24443488 C A MIPEP Missense_Mutation p.V296L 0.19 tolerated(0.12) benign(0.147) TCGA-JY-A6FD-01 13 36048544 36048544 G C MAB21L1 3'UTR 0.25 TCGA-JY-A6FD-01 13 58299063 58299063 C A PCDH17 Missense_Mutation p.P1039T 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.573) TCGA-JY-A6FD-01 14 106478365 106478365 C T IGHV4-4 Silent p.V31V 0.55 TCGA-JY-A6FD-01 14 21424157 21424157 C A RNASE2 Missense_Mutation p.A76D 0.40 deleterious(0.05) probably_damaging(0.963) TCGA-JY-A6FD-01 14 23392262 23392262 C T PRMT5 Missense_Mutation p.E495K 0.37 tolerated(0.33) possibly_damaging(0.544) TCGA-JY-A6FD-01 14 59112640 59112641 GC A DACT1 Frame_Shift_Del p.L435Cfs*72 0.46 TCGA-JY-A6FD-01 14 78399710 78399710 C T ADCK1 Silent p.C516C 0.07 TCGA-JY-A6FD-01 15 40861732 40861732 G C RPUSD2 Missense_Mutation p.E66Q 0.21 deleterious_low_confidence(0.05) benign(0.221) TCGA-JY-A6FD-01 15 52676452 52676452 G A MYO5A Missense_Mutation p.S607L 0.20 tolerated(0.08) benign(0.186) TCGA-JY-A6FD-01 15 58925538 58925538 C A ADAM10 Nonsense_Mutation p.E345* 0.22 TCGA-JY-A6FD-01 15 62945485 62945485 G T TLN2 Missense_Mutation p.L163F 0.18 deleterious(0.04) probably_damaging(0.995) TCGA-JY-A6FD-01 15 65553309 65553309 G C PARP16 Missense_Mutation p.D249E 0.12 tolerated(0.37) benign(0.007) TCGA-JY-A6FD-01 15 75248376 75248376 C G RPP25 Silent p.A183A 0.19 TCGA-JY-A6FD-01 15 93595305 93595305 G A RGMA Missense_Mutation p.P196L 0.31 deleterious(0) probably_damaging(1) TCGA-JY-A6FD-01 16 1129139 1129140 - TGT SSTR5 In_Frame_Ins p.L91dup 0.27 TCGA-JY-A6FD-01 16 29808316 29808316 C T KIF22 Missense_Mutation p.A58V 0.08 tolerated(0.26) benign(0.183) TCGA-JY-A6FD-01 16 53243720 53243720 A C CHD9 Missense_Mutation p.K593N 0.40 probably_damaging(0.939) TCGA-JY-A6FD-01 16 65025827 65025827 T A CDH11 Missense_Mutation p.T219S 0.22 deleterious(0) possibly_damaging(0.504) TCGA-JY-A6FD-01 16 67682606 67682606 C T RLTPR Silent p.L486L 0.21 TCGA-JY-A6FD-01 17 28964385 28964385 G T LRRC37BP1 RNA 0.19 TCGA-JY-A6FD-01 17 38821286 38821286 C G KRT222 Missense_Mutation p.Q22H 0.09 tolerated(0.12) benign(0.085) TCGA-JY-A6FD-01 17 42084980 42084980 G C NAGS Silent p.L430L 0.32 TCGA-JY-A6FD-01 17 58700916 58700916 C T PPM1D Silent p.S169S 0.26 TCGA-JY-A6FD-01 17 63009618 63009618 G T GNA13 3'UTR 0.31 TCGA-JY-A6FD-01 17 72301522 72301522 C T DNAI2 Silent p.G384G 0.28 TCGA-JY-A6FD-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.26 TCGA-JY-A6FD-01 17 7578439 7578439 T - TP53 Frame_Shift_Del p.K164Sfs*6 0.31 TCGA-JY-A6FD-01 17 77082217 77082217 C G ENGASE Missense_Mutation p.S673C 0.20 deleterious(0.03) possibly_damaging(0.711) TCGA-JY-A6FD-01 17 79564312 79564312 C T NPLOC4 Missense_Mutation p.E318K 0.18 tolerated(0.06) probably_damaging(0.936) TCGA-JY-A6FD-01 18 12353077 12353077 C T AFG3L2 Silent p.K415K 0.16 TCGA-JY-A6FD-01 18 30803178 30803178 A C CCDC178 Silent p.L608L 0.19 TCGA-JY-A6FD-01 18 71803093 71803093 G A FBXO15 Missense_Mutation p.S79L 0.25 tolerated(0.05) possibly_damaging(0.876) TCGA-JY-A6FD-01 18 72186240 72186240 A G CNDP2 Missense_Mutation p.T423A 0.19 deleterious(0.04) benign(0.107) TCGA-JY-A6FD-01 19 1108005 1108005 G A SBNO2 3'UTR 0.33 TCGA-JY-A6FD-01 19 14589343 14589343 T A GIPC1 Missense_Mutation p.N296I 0.19 deleterious(0) possibly_damaging(0.896) TCGA-JY-A6FD-01 19 15359812 15359812 G A BRD4 Intron 0.16 TCGA-JY-A6FD-01 19 3006510 3006510 G C TLE2 Missense_Mutation p.Q470E 0.35 deleterious(0) possibly_damaging(0.519) TCGA-JY-A6FD-01 19 39221459 39221459 G A CAPN12 3'UTR 0.19 TCGA-JY-A6FD-01 19 39221757 39221757 G A CAPN12 Silent p.T688T 0.15 TCGA-JY-A6FD-01 19 42731398 42731398 T C ZNF526 3'UTR 0.16 TCGA-JY-A6FD-01 19 42821103 42821103 C G TMEM145 Missense_Mutation p.I296M 0.11 deleterious(0) benign(0.403) TCGA-JY-A6FD-01 19 5244258 5244258 G A PTPRS Silent p.I408I 0.21 TCGA-JY-A6FD-01 19 53207809 53207809 T G ZNF611 3'UTR 0.17 TCGA-JY-A6FD-01 19 53207811 53207811 C G ZNF611 3'UTR 0.21 TCGA-JY-A6FD-01 19 55086220 55086220 C A LILRA2 Silent p.L125L 0.29 TCGA-JY-A6FD-01 19 56701846 56701846 C G ZSCAN5B Missense_Mutation p.A280P 0.06 tolerated(0.06) probably_damaging(0.999) TCGA-JY-A6FD-01 19 58352946 58352946 G C ZNF587B Missense_Mutation p.E302Q 0.30 deleterious(0.02) possibly_damaging(0.864) TCGA-JY-A6FD-01 19 6752623 6752623 C T SH2D3A Missense_Mutation p.R571H 0.34 deleterious(0.02) benign(0.035) TCGA-JY-A6FD-01 19 821508 821508 G A LPPR3 Silent p.L18L 0.15 TCGA-JY-A6FD-01 1 103379194 103379194 G T COL11A1 Missense_Mutation p.P1344Q 0.17 unknown(0) TCGA-JY-A6FD-01 1 10460539 10460539 G A PGD Silent p.L58L 0.38 TCGA-JY-A6FD-01 1 111964264 111964264 C A OVGP1 Missense_Mutation p.D214Y 0.17 deleterious(0) probably_damaging(1) TCGA-JY-A6FD-01 1 118558800 118558801 TT - SPAG17 Frame_Shift_Del p.H1360Qfs*9 0.20 TCGA-JY-A6FD-01 1 150192487 150192487 G A ANP32E 3'UTR 0.20 TCGA-JY-A6FD-01 1 155258694 155258694 G A HCN3 3'UTR 0.19 TCGA-JY-A6FD-01 1 156449079 156449079 C A MEF2D Intron 0.31 TCGA-JY-A6FD-01 1 158262075 158262075 T A CD1C Missense_Mutation p.V177E 0.28 deleterious(0.04) benign(0.045) TCGA-JY-A6FD-01 1 161140274 161140274 G T PPOX Nonsense_Mutation p.E355* 0.21 TCGA-JY-A6FD-01 1 167096823 167096823 A G DUSP27 Missense_Mutation p.T819A 0.31 deleterious(0.02) benign(0.113) TCGA-JY-A6FD-01 1 1961759 1961759 C T GABRD 3'UTR 0.39 TCGA-JY-A6FD-01 1 204131165 204131165 G A REN Silent p.S75S 0.25 TCGA-JY-A6FD-01 1 204393389 204393389 G T PIK3C2B 3'UTR 0.41 TCGA-JY-A6FD-01 1 205779531 205779531 C T SLC41A1 Silent p.L13L 0.22 TCGA-JY-A6FD-01 1 215793669 215793669 G C KCTD3 Missense_Mutation p.L719F 0.14 tolerated_low_confidence(0.71) benign(0.019) TCGA-JY-A6FD-01 1 221507319 221507319 C G RP11-421L10.1 RNA 0.19 TCGA-JY-A6FD-01 1 228467709 228467709 C T OBSCN Silent p.L2957L 0.22 TCGA-JY-A6FD-01 1 244870668 244870668 A G DESI2 3'UTR 0.31 TCGA-JY-A6FD-01 1 3431144 3431144 G A MEGF6 Nonsense_Mutation p.Q275* 0.36 TCGA-JY-A6FD-01 1 36387714 36387714 C T AGO1 3'UTR 0.28 TCGA-JY-A6FD-01 1 52897011 52897011 T A ZCCHC11 Missense_Mutation p.Q1462L 0.28 deleterious(0.02) probably_damaging(0.992) TCGA-JY-A6FD-01 1 84376889 84376889 T A TTLL7 Missense_Mutation p.N582I 0.28 deleterious_low_confidence(0.01) benign(0.08) TCGA-JY-A6FD-01 1 89520389 89520389 C G GBP1 Missense_Mutation p.E547D 0.31 tolerated(0.13) probably_damaging(0.962) TCGA-JY-A6FD-01 20 29612021 29612021 C G FRG1B 5'UTR 0.18 TCGA-JY-A6FD-01 20 57767928 57767928 G C ZNF831 Missense_Mutation p.E618D 0.33 tolerated(0.18) benign(0.029) TCGA-JY-A6FD-01 21 43955658 43955658 C A SLC37A1 Silent p.L116L 0.13 TCGA-JY-A6FD-01 21 45152521 45152521 C T PDXK Intron 0.10 TCGA-JY-A6FD-01 21 46950838 46950838 G A SLC19A1 Missense_Mutation p.R333C 0.30 deleterious(0.01) possibly_damaging(0.532) TCGA-JY-A6FD-01 22 35659857 35659857 C G HMGXB4 Nonsense_Mutation p.Y83* 0.20 TCGA-JY-A6FD-01 22 37875509 37875509 G A MFNG Silent p.N145N 0.21 TCGA-JY-A6FD-01 2 112529998 112529998 G C ANAPC1 Nonsense_Mutation p.S1880* 0.33 TCGA-JY-A6FD-01 2 1459852 1459852 G T TPO Missense_Mutation p.R206L 0.46 deleterious(0) probably_damaging(0.994) TCGA-JY-A6FD-01 2 152695190 152695190 T C CACNB4 3'UTR 0.15 TCGA-JY-A6FD-01 2 163055274 163055274 G C FAP Silent p.V465V 0.16 TCGA-JY-A6FD-01 2 167133514 167133514 G A SCN9A Silent p.V940V 0.18 TCGA-JY-A6FD-01 2 172584463 172584463 G A DYNC1I2 Missense_Mutation p.A377T 0.24 tolerated(0.15) benign(0.074) TCGA-JY-A6FD-01 2 178097394 178097394 G A NFE2L2 Intron 0.10 TCGA-JY-A6FD-01 2 17837006 17837006 C G VSNL1 3'UTR 0.19 TCGA-JY-A6FD-01 2 179443596 179443596 C T TTN Missense_Mutation p.E22721K 0.21 TCGA-JY-A6FD-01 2 179647024 179647024 C T TTN Missense_Mutation p.V1099M 0.38 TCGA-JY-A6FD-01 2 187495554 187495554 G A ITGAV Missense_Mutation p.C185Y 0.28 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FD-01 2 27566340 27566340 G A GTF3C2 Nonsense_Mutation p.Q28* 0.14 TCGA-JY-A6FD-01 2 39088678 39088678 C T DHX57 Missense_Mutation p.E292K 0.18 tolerated(0.87) benign(0.008) TCGA-JY-A6FD-01 2 49381432 49381432 G A FSHR Missense_Mutation p.S42F 0.17 tolerated(0.14) benign(0.412) TCGA-JY-A6FD-01 2 50574483 50574483 G A NRXN1 Intron 0.15 TCGA-JY-A6FD-01 2 61719279 61719279 T A XPO1 Missense_Mutation p.Q593L 0.26 tolerated(0.11) benign(0.004) TCGA-JY-A6FD-01 2 71160086 71160086 G - VAX2 Frame_Shift_Del p.G209Afs*11 0.27 TCGA-JY-A6FD-01 2 79254209 79254209 G T REG3G Missense_Mutation p.G82V 0.24 tolerated(0.08) benign(0.152) TCGA-JY-A6FD-01 3 100295818 100295818 C G TMEM45A Missense_Mutation p.L262V 0.37 deleterious(0.04) possibly_damaging(0.788) TCGA-JY-A6FD-01 3 12877607 12877607 C T RPL32 Missense_Mutation p.E132K 0.30 tolerated(0.22) benign(0.003) TCGA-JY-A6FD-01 3 130188024 130188024 G C COL6A5 Missense_Mutation p.W2392C 0.15 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FD-01 3 130188259 130188259 C T COL6A5 Nonsense_Mutation p.R2471* 0.23 TCGA-JY-A6FD-01 3 133306599 133306599 T A CDV3 Intron 0.29 TCGA-JY-A6FD-01 3 1367589 1367589 A T CNTN6 Missense_Mutation p.N346I 0.20 deleterious(0.03) benign(0.003) TCGA-JY-A6FD-01 3 142030495 142030495 G T XRN1 Missense_Mutation p.A1660D 0.26 tolerated_low_confidence(0.33) benign(0.077) TCGA-JY-A6FD-01 3 142525201 142525201 A - TRPC1 3'UTR 0.11 TCGA-JY-A6FD-01 3 148603919 148603919 C G CPA3 Missense_Mutation p.R341G 0.15 tolerated(0.13) possibly_damaging(0.66) TCGA-JY-A6FD-01 3 155282725 155282725 C G PLCH1 Missense_Mutation p.E338Q 0.33 tolerated(0.3) probably_damaging(0.93) TCGA-JY-A6FD-01 3 193854799 193854799 T C HES1 Missense_Mutation p.V85A 0.32 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FD-01 3 195452647 195452647 C T MUC20 Silent p.G391G 0.17 TCGA-JY-A6FD-01 3 72426821 72426821 A T RYBP 3'UTR 0.42 TCGA-JY-A6FD-01 4 103184069 103184069 A G SLC39A8 3'UTR 0.22 TCGA-JY-A6FD-01 4 155412323 155412323 G T DCHS2 Missense_Mutation p.S62Y 0.17 deleterious(0.02) possibly_damaging(0.653) TCGA-JY-A6FD-01 4 20552484 20552484 G A SLIT2 Missense_Mutation p.E842K 0.16 deleterious(0.02) benign(0.245) TCGA-JY-A6FD-01 4 20620418 20620418 G C SLIT2 Missense_Mutation p.R1459T 0.20 deleterious(0) probably_damaging(0.985) TCGA-JY-A6FD-01 4 36230811 36230811 G A ARAP2 Nonsense_Mutation p.Q100* 0.20 TCGA-JY-A6FD-01 4 42627653 42627653 A G ATP8A1 Missense_Mutation p.F81S 0.20 deleterious(0) probably_damaging(0.986) TCGA-JY-A6FD-01 4 88231439 88231439 C T HSD17B13 Missense_Mutation p.M256I 0.21 tolerated(0.21) benign(0.008) TCGA-JY-A6FD-01 5 10382027 10382027 A G MARCH6 Silent p.A102A 0.17 TCGA-JY-A6FD-01 5 106763018 106763018 G A EFNA5 Silent p.H106H 0.20 TCGA-JY-A6FD-01 5 140537151 140537151 G A PCDHB17 Silent p.L525L 0.17 TCGA-JY-A6FD-01 5 140554584 140554584 G T PCDHB7 Missense_Mutation p.C723F 0.21 tolerated_low_confidence(0.05) benign(0.041) TCGA-JY-A6FD-01 5 142659438 142659438 T G NR3C1 3'Flank 0.37 TCGA-JY-A6FD-01 5 145834808 145834808 A G TCERG1 Silent p.G83G 0.30 TCGA-JY-A6FD-01 5 161317974 161317974 C A GABRA1 Nonsense_Mutation p.Y258* 0.26 TCGA-JY-A6FD-01 5 172550134 172550134 T C CREBRF Missense_Mutation p.V578A 0.24 deleterious(0.05) probably_damaging(0.99) TCGA-JY-A6FD-01 5 180662142 180662142 C T TRIM41 3'UTR 0.31 TCGA-JY-A6FD-01 5 180662148 180662148 C G TRIM41 3'UTR 0.36 TCGA-JY-A6FD-01 5 24498600 24498600 A C CDH10 Silent p.A474A 0.08 TCGA-JY-A6FD-01 5 72285328 72285328 G C FCHO2 Missense_Mutation p.G67A 0.12 deleterious(0) possibly_damaging(0.835) TCGA-JY-A6FD-01 6 121655552 121655552 G T TBC1D32 Missense_Mutation p.Q9K 0.41 deleterious(0) benign(0.026) TCGA-JY-A6FD-01 6 132068172 132068172 G A ENPP3 3'UTR 0.16 TCGA-JY-A6FD-01 6 135521339 135521339 T C MYB Splice_Site p.X608_splice 0.10 TCGA-JY-A6FD-01 6 154727685 154727685 G A CNKSR3 Missense_Mutation p.R491W 0.20 deleterious(0) probably_damaging(0.955) TCGA-JY-A6FD-01 6 163510422 163510422 A T PACRG Missense_Mutation p.I199F 0.35 deleterious(0) possibly_damaging(0.889) TCGA-JY-A6FD-01 6 166823100 166823100 C G RPS6KA2 3'Flank 0.30 TCGA-JY-A6FD-01 6 169053824 169053824 G A SMOC2 Missense_Mutation p.D412N 0.12 tolerated(0.09) benign(0.154) TCGA-JY-A6FD-01 6 26506976 26506976 C A BTN1A1 Missense_Mutation p.L259I 0.09 tolerated(0.15) benign(0.029) TCGA-JY-A6FD-01 6 54212285 54212285 A G TINAG Missense_Mutation p.D290G 0.53 deleterious(0) probably_damaging(0.932) TCGA-JY-A6FD-01 6 56473870 56473870 T A DST Intron 0.53 TCGA-JY-A6FD-01 6 75890711 75890711 G A COL12A1 Missense_Mutation p.A703V 0.17 possibly_damaging(0.804) TCGA-JY-A6FD-01 7 107790418 107790418 C T NRCAM Silent p.P1284P 0.29 TCGA-JY-A6FD-01 7 150642567 150642567 C T KCNH2 Silent p.P1122P 0.21 TCGA-JY-A6FD-01 7 44561742 44561742 C T NPC1L1 Missense_Mutation p.E913K 0.15 tolerated(0.9) benign(0.001) TCGA-JY-A6FD-01 7 45125071 45125071 G A NACAD Silent p.L236L 0.12 TCGA-JY-A6FD-01 7 45797639 45797639 G C SEPT7P2 Intron 0.19 TCGA-JY-A6FD-01 7 56170694 56170694 C T CHCHD2 Missense_Mutation p.G104E 0.18 tolerated(0.12) benign(0.097) TCGA-JY-A6FD-01 7 62752571 62752571 T G ZNF733P RNA 0.17 TCGA-JY-A6FD-01 7 72741936 72741936 C T TRIM50 5'UTR 0.29 TCGA-JY-A6FD-01 7 909099 909099 G A SUN1 Silent p.K698K 0.19 TCGA-JY-A6FD-01 8 57074958 57074959 AC - PLAG1 3'UTR 0.19 TCGA-JY-A6FD-01 8 65536985 65536985 A T CYP7B1 Silent p.G78G 0.14 TCGA-JY-A6FD-01 8 74332341 74332341 G C STAU2 3'Flank 0.24 TCGA-JY-A6FD-01 8 91078168 91078168 C T CALB1 Silent p.K136K 0.21 TCGA-JY-A6FD-01 8 99105576 99105576 C T C8orf47 3'UTR 0.26 TCGA-JY-A6FD-01 8 99467961 99467961 C T STK3 3'UTR 0.15 TCGA-JY-A6FD-01 9 123182069 123182069 G C CDK5RAP2 Missense_Mutation p.Q1392E 0.23 deleterious(0.04) benign(0.006) TCGA-JY-A6FD-01 9 123903795 123903795 C T CNTRL Silent p.L874L 0.15 TCGA-JY-A6FD-01 9 133948140 133948140 G T LAMC3 Missense_Mutation p.C1112F 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-JY-A6FD-01 X 102007031 102007031 G T BHLHB9 3'UTR 0.18 TCGA-JY-A6FD-01 X 107084038 107084038 G A MID2 Missense_Mutation p.S48N 0.34 tolerated(0.29) probably_damaging(0.996) TCGA-JY-A6FD-01 X 135429986 135429987 - T GPR112 Frame_Shift_Ins p.L1376Ffs*4 0.21 TCGA-JY-A6FD-01 X 135430355 135430355 T C GPR112 Missense_Mutation p.M1497T 0.15 tolerated(1) benign(0) TCGA-JY-A6FD-01 X 153219809 153219809 A G HCFC1 Silent p.G1347G 0.18 TCGA-JY-A6FD-01 X 17752563 17752563 C T NHS 3'UTR 0.21 TCGA-JY-A6FD-01 X 3261890 3261890 G A MXRA5 5'UTR 0.15 TCGA-JY-A6FD-01 X 39910917 39910917 T C BCOR 3'UTR 0.16 TCGA-JY-A6FD-01 X 41524635 41524635 G T CASK Missense_Mutation p.D201E 0.20 deleterious(0) probably_damaging(1) TCGA-JY-A6FD-01 X 46917885 46917885 G A JADE3 Silent p.P626P 0.28 TCGA-JY-A6FD-01 X 48935401 48935401 C A WDR45 Nonsense_Mutation p.E46* 0.25 TCGA-JY-A6FD-01 X 53268414 53268414 G C IQSEC2 Silent p.P1026P 0.23 TCGA-JY-A6FD-01 X 62570563 62570563 G T SPIN4 Missense_Mutation p.Q46K 0.19 tolerated(0.13) possibly_damaging(0.543) TCGA-JY-A6FD-01 X 70339933 70339933 G T MED12 Missense_Mutation p.A156S 0.19 benign(0.1) TCGA-JY-A6FD-01 X 70367646 70367646 C A NLGN3 Missense_Mutation p.P16H 0.23 tolerated_low_confidence(0.06) benign(0.201) TCGA-JY-A6FD-01 X 74644566 74644566 C A ZDHHC15 Silent p.V219V 0.40 TCGA-JY-A6FD-01 X 99661722 99661722 C T PCDH19 Missense_Mutation p.R625K 0.19 tolerated(0.06) possibly_damaging(0.823) TCGA-JY-A6FE-01 10 101473139 101473139 T C COX15 3'Flank 0.64 TCGA-JY-A6FE-01 10 13672330 13672330 A G PRPF18 Missense_Mutation p.N340S 0.42 tolerated(0.32) benign(0.045) TCGA-JY-A6FE-01 10 69834989 69834989 G T HERC4 5'UTR 0.53 TCGA-JY-A6FE-01 11 102814822 102814822 G T MMP13 3'UTR 0.41 TCGA-JY-A6FE-01 11 113631036 113631036 A G ZW10 Silent p.L159L 0.35 TCGA-JY-A6FE-01 11 124790261 124790261 T C HEPACAM 3'UTR 0.23 TCGA-JY-A6FE-01 11 32987900 32987900 A G QSER1 Missense_Mutation p.K1546R 0.24 tolerated(0.27) probably_damaging(0.999) TCGA-JY-A6FE-01 11 58385599 58385599 A G ZFP91 3'UTR 0.47 TCGA-JY-A6FE-01 11 60899899 60899899 T G VPS37C Missense_Mutation p.Q154P 0.09 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FE-01 11 66190289 66190289 G C NPAS4 Missense_Mutation p.C192S 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-JY-A6FE-01 12 13224300 13224300 C G KIAA1467 Silent p.A498A 0.50 TCGA-JY-A6FE-01 12 49218137 49218143 AAACAGG - CACNB3 Frame_Shift_Del p.K130Sfs*13 0.72 TCGA-JY-A6FE-01 12 65641332 65641332 C T LEMD3 3'UTR 0.27 TCGA-JY-A6FE-01 12 89984142 89984142 A C ATP2B1 3'UTR 0.56 TCGA-JY-A6FE-01 13 101755521 101755521 A G NALCN Splice_Site p.X1019_splice 0.07 TCGA-JY-A6FE-01 13 109617123 109617124 - T MYO16 Frame_Shift_Ins p.R726Lfs*9 0.24 TCGA-JY-A6FE-01 13 25910320 25910320 T G NUPL1 Intron 0.65 TCGA-JY-A6FE-01 13 41826879 41826879 C T MTRF1 Missense_Mutation p.C200Y 0.73 deleterious(0) probably_damaging(1) TCGA-JY-A6FE-01 14 55509975 55509975 A C SOCS4 Silent p.S72S 0.75 TCGA-JY-A6FE-01 15 42057160 42057160 A - MGA Frame_Shift_Del p.G2609Vfs*9 0.10 TCGA-JY-A6FE-01 15 56121974 56121974 T C NEDD4 3'UTR 0.70 TCGA-JY-A6FE-01 15 85213003 85213003 A C SEC11A 3'UTR 0.45 TCGA-JY-A6FE-01 16 1391467 1391467 C T BAIAP3 Silent p.P271P 0.78 TCGA-JY-A6FE-01 16 30779971 30779971 C T RNF40 Silent p.L671L 0.77 TCGA-JY-A6FE-01 16 3820588 3820588 G A CREBBP Nonsense_Mutation p.Q955* 0.83 TCGA-JY-A6FE-01 16 46741550 46741550 G T MYLK3 3'UTR 0.31 TCGA-JY-A6FE-01 16 57850795 57850795 G A CTD-2600O9.1 3'UTR 0.16 TCGA-JY-A6FE-01 17 11797759 11797759 G A DNAH9 Silent p.T3784T 0.25 TCGA-JY-A6FE-01 17 2587317 2587317 G A PAFAH1B1 3'UTR 0.68 TCGA-JY-A6FE-01 17 27954662 27954662 C T SSH2 3'UTR 0.66 TCGA-JY-A6FE-01 17 46265275 46265275 A C SKAP1 Missense_Mutation p.F124L 0.44 tolerated(0.37) probably_damaging(0.998) TCGA-JY-A6FE-01 17 47006161 47006161 A G UBE2Z 3'UTR 0.65 TCGA-JY-A6FE-01 17 60021750 60021750 A T MED13 3'UTR 0.16 TCGA-JY-A6FE-01 17 68129313 68129313 C A KCNJ16 Missense_Mutation p.S362Y 0.75 tolerated(0.29) benign(0.266) TCGA-JY-A6FE-01 17 7578503 7578516 CAGGGCAGGTCTTG - TP53 Frame_Shift_Del p.K139Afs*5 0.80 TCGA-JY-A6FE-01 17 80575258 80575258 C T WDR45B Silent p.Q240Q 0.45 TCGA-JY-A6FE-01 19 10402942 10402942 G A ICAM5 Missense_Mutation p.C302Y 0.10 deleterious(0) possibly_damaging(0.711) TCGA-JY-A6FE-01 19 14231429 14231429 T G ASF1B Missense_Mutation p.I151L 0.68 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FE-01 19 4653043 4653043 C T TNFAIP8L1 3'UTR 0.73 TCGA-JY-A6FE-01 19 46832499 46832499 C G HIF3A Silent p.P492P 0.73 TCGA-JY-A6FE-01 19 50839874 50839875 - T NAPSB RNA 0.37 TCGA-JY-A6FE-01 19 51329007 51329007 G - KLK15 3'UTR 0.37 TCGA-JY-A6FE-01 19 53945817 53945817 A T TPM3P9 RNA 0.74 TCGA-JY-A6FE-01 19 55685891 55685891 T C SYT5 Silent p.Q318Q 0.28 TCGA-JY-A6FE-01 1 11017133 11017133 A G C1orf127 Missense_Mutation p.L242P 0.05 deleterious(0) benign(0.358) TCGA-JY-A6FE-01 1 160278920 160278920 G - COPA Frame_Shift_Del p.P397Lfs*20 0.23 TCGA-JY-A6FE-01 1 186114919 186114919 C G HMCN1 Missense_Mutation p.S4824R 0.35 benign(0.27) TCGA-JY-A6FE-01 1 204092273 204092273 G A SOX13 Missense_Mutation p.E390K 0.41 tolerated(0.25) benign(0.211) TCGA-JY-A6FE-01 1 204990510 204990510 C G NFASC 3'UTR 0.06 TCGA-JY-A6FE-01 1 43167982 43167982 A G YBX1 3'UTR 0.12 TCGA-JY-A6FE-01 1 45977030 45977030 T G PRDX1 Missense_Mutation p.S191R 0.67 deleterious(0) probably_damaging(1) TCGA-JY-A6FE-01 1 97280395 97280395 G A PTBP2 3'Flank 0.73 TCGA-JY-A6FE-01 20 18038460 18038460 C T OVOL2 5'UTR 0.27 TCGA-JY-A6FE-01 20 32677149 32677149 A T EIF2S2 3'UTR 0.38 TCGA-JY-A6FE-01 20 50401201 50401201 G A SALL4 Missense_Mutation p.A922V 0.48 tolerated(0.64) benign(0.283) TCGA-JY-A6FE-01 20 6065919 6065919 G C FERMT1 Missense_Mutation p.Q463E 0.20 tolerated(0.14) benign(0.009) TCGA-JY-A6FE-01 20 61572954 61572954 A T GID8 Missense_Mutation p.M34L 0.49 deleterious(0.03) benign(0.21) TCGA-JY-A6FE-01 20 744539 744539 G A SLC52A3 Missense_Mutation p.L226F 0.10 tolerated(0.83) benign(0.005) TCGA-JY-A6FE-01 22 24657660 24657660 G C POM121L9P Splice_Site 0.45 TCGA-JY-A6FE-01 22 31556291 31556291 T C RNF185 Splice_Site 0.70 TCGA-JY-A6FE-01 22 34046437 34046437 A T LARGE Silent p.T108T 0.80 TCGA-JY-A6FE-01 2 100900818 100900818 A T LONRF2 Missense_Mutation p.I736N 0.14 deleterious(0) possibly_damaging(0.897) TCGA-JY-A6FE-01 2 103353149 103353149 C A MFSD9 Nonsense_Mutation p.G41* 0.17 TCGA-JY-A6FE-01 2 33484653 33484653 A C LTBP1 Splice_Site p.X799_splice 0.22 TCGA-JY-A6FE-01 2 5838019 5838019 G T SOX11 3'UTR 0.73 TCGA-JY-A6FE-01 3 138724446 138724446 A G PRR23A Missense_Mutation p.L222P 0.22 deleterious(0) probably_damaging(0.928) TCGA-JY-A6FE-01 3 141923397 141923397 T C GK5 Intron 0.90 TCGA-JY-A6FE-01 3 45046822 45046822 G A EXOSC7 Silent p.S177S 0.61 TCGA-JY-A6FE-01 4 154257196 154257196 T C TRIM2 3'UTR 0.05 TCGA-JY-A6FE-01 4 170077739 170077741 ATG - SH3RF1 In_Frame_Del p.I162del 0.62 TCGA-JY-A6FE-01 4 42554533 42554533 G A ATP8A1 Missense_Mutation p.A503V 0.72 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FE-01 4 47849977 47849977 T C NFXL1 3'UTR 0.53 TCGA-JY-A6FE-01 4 78694306 78694306 T C CNOT6L Missense_Mutation p.N110S 0.64 tolerated(0.44) benign(0.392) TCGA-JY-A6FE-01 4 88723664 88723664 A G IBSP Missense_Mutation p.K20R 0.68 tolerated(0.05) benign(0.29) TCGA-JY-A6FE-01 4 95211697 95211697 A G SMARCAD1 3'UTR 0.82 TCGA-JY-A6FE-01 5 13766214 13766214 A C DNAH5 Missense_Mutation p.D3324E 0.60 possibly_damaging(0.739) TCGA-JY-A6FE-01 5 140537562 140537562 C A PCDHB17 3'UTR 0.24 TCGA-JY-A6FE-01 5 140789354 140789354 G A PCDHGB6 Missense_Mutation p.A529T 0.81 deleterious(0) benign(0.007) TCGA-JY-A6FE-01 5 179221199 179221199 C A LTC4S Intron 0.71 TCGA-JY-A6FE-01 5 3601168 3601168 T C IRX1 3'UTR 0.29 TCGA-JY-A6FE-01 6 132201052 132201052 G A ENPP1 Missense_Mutation p.G660R 0.31 deleterious(0) benign(0.417) TCGA-JY-A6FE-01 6 153365046 153365046 G C RGS17 Missense_Mutation p.C36W 0.43 tolerated(0.16) probably_damaging(0.995) TCGA-JY-A6FE-01 6 160494796 160494796 G A IGF2R Missense_Mutation p.C1652Y 0.36 deleterious(0) probably_damaging(1) TCGA-JY-A6FE-01 6 169648945 169648945 C T THBS2 Missense_Mutation p.R59H 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-JY-A6FE-01 6 56437732 56437732 G A DST Missense_Mutation p.A1833V 0.29 benign(0.001) TCGA-JY-A6FE-01 6 87994440 87994440 C T GJB7 Missense_Mutation p.C64Y 0.24 deleterious(0) probably_damaging(1) TCGA-JY-A6FE-01 7 100861637 100861637 C T PLOD3 5'Flank 0.43 TCGA-JY-A6FE-01 7 121679506 121679506 A C PTPRZ1 Splice_Site p.X1835_splice 0.33 TCGA-JY-A6FE-01 7 128409582 128409582 A T CALU 3'UTR 0.46 TCGA-JY-A6FE-01 7 75659797 75659798 - A STYXL1 Frame_Shift_Ins p.L16Pfs*28 0.24 TCGA-JY-A6FE-01 7 80302143 80302143 C A CD36 Missense_Mutation p.P395T 0.54 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FE-01 7 81372194 81372194 A G HGF Intron 0.38 TCGA-JY-A6FE-01 7 82585187 82585187 G A PCLO Silent p.D1694D 0.34 TCGA-JY-A6FE-01 7 86274134 86274134 G A GRM3 5'UTR 0.22 TCGA-JY-A6FE-01 7 889579 889579 G C SUN1 Intron 0.21 TCGA-JY-A6FE-01 7 91793876 91793876 C G LRRD1 Missense_Mutation p.R214T 0.20 tolerated(0.17) benign(0.111) TCGA-JY-A6FE-01 8 117858714 117858714 T C RAD21 3'UTR 0.81 TCGA-JY-A6FE-01 8 123793977 123793977 T G ZHX2 5'UTR 0.81 TCGA-JY-A6FE-01 8 30922442 30922442 G A WRN Missense_Mutation p.G123R 0.47 deleterious(0.03) probably_damaging(0.995) TCGA-JY-A6FE-01 8 38677795 38677795 C G TACC1 Missense_Mutation p.L345V 0.30 tolerated(0.44) benign(0.033) TCGA-JY-A6FE-01 9 116155891 116155891 T G ALAD 5'UTR 0.43 TCGA-JY-A6FE-01 9 125552143 125552143 G A OR5C1 Missense_Mutation p.R311Q 0.39 deleterious(0.04) benign(0.277) TCGA-JY-A6FE-01 9 133376608 133376608 C T ASS1 3'UTR 0.47 TCGA-JY-A6FE-01 9 135465513 135465513 G C BARHL1 3'UTR 0.28 TCGA-JY-A6FE-01 9 138719368 138719368 G A CAMSAP1 Missense_Mutation p.R370C 0.43 deleterious(0) possibly_damaging(0.886) TCGA-JY-A6FE-01 9 84547572 84547572 C A RP11-383M4.6 Intron 0.11 TCGA-JY-A6FE-01 X 150906969 150906969 C A CNGA2 Missense_Mutation p.T5N 0.38 tolerated_low_confidence(0.18) benign(0.004) TCGA-JY-A6FE-01 X 57458421 57458421 C G FAAH2 Missense_Mutation p.S356C 0.26 deleterious(0) possibly_damaging(0.616) TCGA-JY-A6FG-01 10 120354171 120354171 C T PRLHR Missense_Mutation p.V196M 0.32 tolerated(0.14) benign(0.009) TCGA-JY-A6FG-01 10 129910413 129910413 C T MKI67 Silent p.S651S 0.31 TCGA-JY-A6FG-01 10 134218219 134218219 A T PWWP2B Missense_Mutation p.E72V 0.48 tolerated(0.1) benign(0.404) TCGA-JY-A6FG-01 10 21070007 21070007 C A NEBL 3'UTR 0.41 TCGA-JY-A6FG-01 10 27040636 27040636 T G ABI1 Silent p.P414P 0.28 TCGA-JY-A6FG-01 10 45430542 45430542 C T TMEM72 Missense_Mutation p.P263L 0.30 deleterious(0.03) benign(0.085) TCGA-JY-A6FG-01 10 49935564 49935564 C T WDFY4 Silent p.D277D 0.31 TCGA-JY-A6FG-01 10 56423942 56423942 C A PCDH15 Missense_Mutation p.Q27H 0.31 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-JY-A6FG-01 10 61832903 61832903 C T ANK3 Missense_Mutation p.R2579K 0.36 possibly_damaging(0.899) TCGA-JY-A6FG-01 10 72292493 72292495 GGA - PALD1 In_Frame_Del p.E252del 0.30 TCGA-JY-A6FG-01 10 87966134 87966134 G A GRID1 Silent p.Y169Y 0.35 TCGA-JY-A6FG-01 11 101946692 101946692 G A C11orf70 Missense_Mutation p.C175Y 0.25 deleterious(0) probably_damaging(0.994) TCGA-JY-A6FG-01 11 113700044 113700044 T C USP28 Missense_Mutation p.T312A 0.25 tolerated(0.26) probably_damaging(0.976) TCGA-JY-A6FG-01 11 118915486 118915486 G A HYOU1 3'UTR 0.33 TCGA-JY-A6FG-01 11 119171086 119171086 C G CBL 3'UTR 0.41 TCGA-JY-A6FG-01 11 119535970 119535970 C T PVRL1 Silent p.R347R 0.36 TCGA-JY-A6FG-01 11 134073578 134073578 G A NCAPD3 Missense_Mutation p.S480L 0.37 tolerated(0.58) benign(0.004) TCGA-JY-A6FG-01 11 17418754 17418754 T G ABCC8 Missense_Mutation p.Y1325S 0.46 deleterious(0) benign(0.013) TCGA-JY-A6FG-01 11 18062306 18062306 T A TPH1 Missense_Mutation p.I2F 0.48 deleterious(0) possibly_damaging(0.776) TCGA-JY-A6FG-01 11 19967974 19967974 G A NAV2 Missense_Mutation p.R748Q 0.35 deleterious(0) probably_damaging(0.992) TCGA-JY-A6FG-01 11 35641852 35641852 T C FJX1 3'UTR 0.29 TCGA-JY-A6FG-01 11 552588 552588 C T LRRC56 Missense_Mutation p.P401S 0.27 tolerated(0.63) benign(0.036) TCGA-JY-A6FG-01 11 55735930 55735930 C A OR10AG1 Missense_Mutation p.V4F 0.38 deleterious(0.03) benign(0.117) TCGA-JY-A6FG-01 11 6413037 6413037 G A SMPD1 Missense_Mutation p.E248K 0.38 deleterious(0.01) probably_damaging(0.922) TCGA-JY-A6FG-01 11 64658835 64658835 C T ATG2A 3'Flank 0.38 TCGA-JY-A6FG-01 11 7669640 7669640 C A PPFIBP2 Missense_Mutation p.Q557K 0.40 tolerated(1) probably_damaging(0.993) TCGA-JY-A6FG-01 11 78369429 78369429 G T TENM4 Missense_Mutation p.R2662S 0.39 deleterious(0) probably_damaging(0.965) TCGA-JY-A6FG-01 11 8665968 8665968 T G TRIM66 Intron 0.33 TCGA-JY-A6FG-01 11 88961100 88961100 C A TYR Missense_Mutation p.N382K 0.37 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 11 94280688 94280688 G A FUT4 3'UTR 0.37 TCGA-JY-A6FG-01 12 102813302 102813302 C A IGF1 Missense_Mutation p.M129I 0.22 tolerated(0.36) benign(0.126) TCGA-JY-A6FG-01 12 108082471 108082471 C T PWP1 Missense_Mutation p.R71C 0.25 tolerated(0.05) benign(0.132) TCGA-JY-A6FG-01 12 118533516 118533516 C T VSIG10 Silent p.S61S 0.51 TCGA-JY-A6FG-01 12 120648834 120648834 G T PXN 3'UTR 0.72 TCGA-JY-A6FG-01 12 122676049 122676049 G A LRRC43 Missense_Mutation p.V342M 0.56 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FG-01 12 2693763 2693763 G T CACNA1C Missense_Mutation p.K773N 0.47 tolerated(0.06) benign(0.211) TCGA-JY-A6FG-01 12 29596332 29596332 C T OVCH1 Missense_Mutation p.R1040H 0.30 tolerated(0.35) benign(0) TCGA-JY-A6FG-01 12 3000140 3000140 T G TULP3 Missense_Mutation p.S9R 0.22 deleterious_low_confidence(0) benign(0.048) TCGA-JY-A6FG-01 12 3782646 3782646 C T EFCAB4B Missense_Mutation p.E213K 0.06 tolerated(0.39) benign(0.009) TCGA-JY-A6FG-01 12 40693029 40693029 G C LRRK2 Missense_Mutation p.E1156Q 0.39 deleterious(0) possibly_damaging(0.756) TCGA-JY-A6FG-01 12 57860033 57860033 G A GLI1 Missense_Mutation p.S258N 0.43 tolerated(1) probably_damaging(0.939) TCGA-JY-A6FG-01 12 6132813 6132813 C T VWF Silent p.R1121R 0.34 TCGA-JY-A6FG-01 12 64609598 64609598 C T C12orf66 Silent p.E127E 0.44 TCGA-JY-A6FG-01 12 77421782 77421783 AG - E2F7 Frame_Shift_Del p.L674Cfs*4 0.22 TCGA-JY-A6FG-01 13 102375053 102375053 G C FGF14 3'UTR 0.48 TCGA-JY-A6FG-01 13 22067385 22067385 T C MICU2 3'UTR 0.35 TCGA-JY-A6FG-01 13 28866944 28866944 A T PAN3 3'Flank 0.47 TCGA-JY-A6FG-01 13 28897002 28897002 C T FLT1 Missense_Mutation p.V960I 0.42 tolerated(0.2) benign(0.034) TCGA-JY-A6FG-01 13 29600278 29600278 G A MTUS2 Silent p.T491T 0.54 TCGA-JY-A6FG-01 13 31035081 31035081 C G HMGB1 3'UTR 0.07 TCGA-JY-A6FG-01 13 32869785 32869785 C G FRY 3'UTR 0.42 TCGA-JY-A6FG-01 13 77657220 77657220 T G MYCBP2 Silent p.S3623S 0.44 TCGA-JY-A6FG-01 14 104220545 104220545 G A PPP1R13B Missense_Mutation p.R165C 0.39 deleterious(0.02) benign(0.021) TCGA-JY-A6FG-01 14 106307236 106307236 C T IGHD Splice_Site p.X267_splice 0.25 TCGA-JY-A6FG-01 14 107282902 107282902 G T IGHV7-81 Missense_Mutation p.Q81K 0.14 tolerated(0.07) benign(0.253) TCGA-JY-A6FG-01 14 23894041 23894041 C A MYH7 Missense_Mutation p.E872D 0.24 deleterious(0.04) benign(0.152) TCGA-JY-A6FG-01 14 24839449 24839449 C T NFATC4 Missense_Mutation p.P345L 0.47 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 14 55818294 55818294 G A FBXO34 Missense_Mutation p.A396T 0.59 tolerated(0.53) benign(0.138) TCGA-JY-A6FG-01 14 58471477 58471477 C A C14orf37 Missense_Mutation p.D768Y 0.56 deleterious(0) probably_damaging(0.963) TCGA-JY-A6FG-01 14 60976162 60976162 G T SIX6 Missense_Mutation p.G16W 0.38 deleterious(0.01) possibly_damaging(0.785) TCGA-JY-A6FG-01 14 66188719 66188719 C T FUT8 Silent p.G354G 0.30 TCGA-JY-A6FG-01 14 94935585 94935585 G A SERPINA9 Missense_Mutation p.T216M 0.53 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 15 101606863 101606863 C T LRRK1 Silent p.I1929I 0.37 TCGA-JY-A6FG-01 15 25467313 25467313 C G SNORD115-27 3'Flank 0.33 TCGA-JY-A6FG-01 15 27184654 27184654 G T GABRA5 Intron 0.70 TCGA-JY-A6FG-01 15 28441632 28441632 C G HERC2 Missense_Mutation p.V2699L 0.34 benign(0.299) TCGA-JY-A6FG-01 15 43476858 43476866 AGCAGGTGG - TMEM62 3'UTR 0.23 TCGA-JY-A6FG-01 15 55964703 55964703 G A PRTG Nonsense_Mutation p.Q661* 0.36 TCGA-JY-A6FG-01 15 65108838 65108838 C T PIF1 Missense_Mutation p.V601I 0.33 deleterious(0.02) benign(0.122) TCGA-JY-A6FG-01 15 65499281 65499281 C T CILP Missense_Mutation p.R88H 0.08 deleterious(0.04) benign(0.017) TCGA-JY-A6FG-01 15 65916439 65916439 G A SLC24A1 Missense_Mutation p.M7I 0.33 benign(0) TCGA-JY-A6FG-01 15 69003150 69003150 G A CORO2B Missense_Mutation p.R138Q 0.29 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 15 72432600 72432600 G T SENP8 Missense_Mutation p.K212N 0.31 deleterious(0.01) possibly_damaging(0.906) TCGA-JY-A6FG-01 15 72456023 72456023 G C GRAMD2 Missense_Mutation p.P226A 0.24 tolerated(0.08) benign(0.354) TCGA-JY-A6FG-01 15 74006619 74006619 G T CD276 3'UTR 0.40 TCGA-JY-A6FG-01 15 90807287 90807287 A T TTLL13 3'Flank 0.38 TCGA-JY-A6FG-01 15 90807288 90807288 G C TTLL13 3'Flank 0.35 TCGA-JY-A6FG-01 16 10575953 10575953 T A ATF7IP2 Silent p.I632I 0.31 TCGA-JY-A6FG-01 16 11097121 11097121 A C CLEC16A Missense_Mutation p.E421A 0.30 tolerated(0.08) benign(0.146) TCGA-JY-A6FG-01 16 1621406 1621406 A G IFT140 Splice_Site p.X551_splice 0.42 TCGA-JY-A6FG-01 16 23091494 23091494 T G USP31 Splice_Site p.X651_splice 0.32 TCGA-JY-A6FG-01 16 23713995 23713995 T G ERN2 Missense_Mutation p.T343P 0.37 tolerated(0.19) benign(0.353) TCGA-JY-A6FG-01 16 28374090 28374090 G A NPIPB6 Silent p.S18S 0.44 TCGA-JY-A6FG-01 16 4016810 4016810 C T ADCY9 Missense_Mutation p.G1010R 0.51 deleterious(0) benign(0.37) TCGA-JY-A6FG-01 16 67757912 67757912 G A RANBP10 3'UTR 0.11 TCGA-JY-A6FG-01 16 67963026 67963026 C A PSKH1 3'UTR 0.36 TCGA-JY-A6FG-01 16 708985 708985 C A WDR90 Silent p.L995L 0.47 TCGA-JY-A6FG-01 16 71674997 71674997 G T MARVELD3 3'UTR 0.50 TCGA-JY-A6FG-01 17 11459150 11459150 C A SHISA6 Missense_Mutation p.P349Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-JY-A6FG-01 17 1582171 1582171 C T PRPF8 Missense_Mutation p.R535K 0.42 tolerated(0.05) probably_damaging(0.999) TCGA-JY-A6FG-01 17 17719808 17719808 G A SREBF1 Silent p.A700A 0.44 TCGA-JY-A6FG-01 17 33520508 33520508 C T SLC35G3 Silent p.A273A 0.05 TCGA-JY-A6FG-01 17 35518913 35518913 C T ACACA Missense_Mutation p.G1711S 0.36 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 17 37187981 37187981 G T CTD-2206N4.2 5'Flank 0.32 TCGA-JY-A6FG-01 17 40315780 40315780 G A KCNH4 Missense_Mutation p.S774F 0.32 deleterious(0.03) probably_damaging(0.998) TCGA-JY-A6FG-01 17 42092301 42092301 G T TMEM101 Nonsense_Mutation p.S7* 0.54 TCGA-JY-A6FG-01 17 43112365 43112365 G T DCAKD 5'UTR 0.18 TCGA-JY-A6FG-01 17 45884747 45884747 G T OSBPL7 3'UTR 0.31 TCGA-JY-A6FG-01 17 56582201 56582201 C T MTMR4 Missense_Mutation p.R413H 0.07 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 17 57288293 57288293 A G SMG8 Missense_Mutation p.H294R 0.39 deleterious(0.02) benign(0.439) TCGA-JY-A6FG-01 17 67218779 67218780 - T ABCA10 Frame_Shift_Ins p.Y32Ifs*3 0.37 TCGA-JY-A6FG-01 17 71231802 71231802 G T C17orf80 Missense_Mutation p.D61Y 0.42 deleterious(0) possibly_damaging(0.653) TCGA-JY-A6FG-01 17 73204645 73204645 G A NUP85 Silent p.K19K 0.29 TCGA-JY-A6FG-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.41 tolerated(0.13) possibly_damaging(0.631) TCGA-JY-A6FG-01 17 76423012 76423012 G C DNAH17 Missense_Mutation p.L4279V 0.28 possibly_damaging(0.868) TCGA-JY-A6FG-01 17 79954650 79954650 G A ASPSCR1 Silent p.S287S 0.36 TCGA-JY-A6FG-01 18 10736690 10736690 T C PIEZO2 Missense_Mutation p.Y1551C 0.27 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FG-01 18 13049675 13049675 A G CEP192 Missense_Mutation p.N962S 0.39 tolerated(1) benign(0.008) TCGA-JY-A6FG-01 18 33795865 33795865 C T MOCOS Silent p.V574V 0.26 TCGA-JY-A6FG-01 18 5145660 5145660 G C C18orf42 Silent p.V37V 0.37 TCGA-JY-A6FG-01 18 61637385 61637385 A G SERPINB8 5'UTR 0.17 TCGA-JY-A6FG-01 18 73139414 73139414 C A SMIM21 Missense_Mutation p.L35F 0.26 tolerated_low_confidence(0.35) possibly_damaging(0.765) TCGA-JY-A6FG-01 19 10070440 10070441 - C COL5A3 3'UTR 0.33 TCGA-JY-A6FG-01 19 10225804 10225804 G T EIF3G Missense_Mutation p.P317T 0.47 deleterious(0) probably_damaging(0.995) TCGA-JY-A6FG-01 19 11143993 11143993 C T SMARCA4 Missense_Mutation p.R1192C 0.49 probably_damaging(1) TCGA-JY-A6FG-01 19 11918704 11918704 C A ZNF491 3'UTR 0.31 TCGA-JY-A6FG-01 19 1244157 1244157 C A ATP5D Silent p.A119A 0.27 TCGA-JY-A6FG-01 19 18557284 18557284 G A ELL Silent p.Y513Y 0.35 TCGA-JY-A6FG-01 19 19243553 19243553 C T TMEM161A Missense_Mutation p.G67S 0.29 deleterious(0.05) benign(0.367) TCGA-JY-A6FG-01 19 20808178 20808178 C A ZNF626 Missense_Mutation p.G169W 0.32 deleterious(0) probably_damaging(0.981) TCGA-JY-A6FG-01 19 21300460 21300462 TAA G ZNF714 Frame_Shift_Del p.H330Qfs*13 0.36 TCGA-JY-A6FG-01 19 31770039 31770039 G A TSHZ3 Silent p.S220S 0.32 TCGA-JY-A6FG-01 19 3179168 3179168 C T S1PR4 Silent p.F126F 0.60 TCGA-JY-A6FG-01 19 3734314 3734314 T C TJP3 Intron 0.07 TCGA-JY-A6FG-01 19 38845408 38845408 C T CATSPERG Silent p.F352F 0.37 TCGA-JY-A6FG-01 19 3907828 3907828 G A ATCAY Missense_Mutation p.R152H 0.38 tolerated(0.17) probably_damaging(0.996) TCGA-JY-A6FG-01 19 44980661 44980661 A G ZNF180 Silent p.H679H 0.30 TCGA-JY-A6FG-01 19 50103072 50103072 C A PRR12 Missense_Mutation p.P1408T 0.33 possibly_damaging(0.803) TCGA-JY-A6FG-01 19 51728475 51728475 G T CD33 Silent p.G13G 0.34 TCGA-JY-A6FG-01 19 52954490 52954490 C T ZNF578 5'Flank 0.44 TCGA-JY-A6FG-01 19 53385108 53385108 C T ZNF320 Missense_Mutation p.E91K 0.31 tolerated(0.38) benign(0.091) TCGA-JY-A6FG-01 19 54377604 54377604 C T MYADM Missense_Mutation p.S274L 0.36 tolerated(0.1) benign(0.212) TCGA-JY-A6FG-01 19 55556604 55556604 C T RDH13 Silent p.E278E 0.34 TCGA-JY-A6FG-01 19 5692046 5692046 C T LONP1 Silent p.R959R 0.75 TCGA-JY-A6FG-01 19 58427950 58427950 C A ZNF417 5'Flank 0.53 TCGA-JY-A6FG-01 19 7505040 7505040 C T ARHGEF18 Missense_Mutation p.R72C 0.42 tolerated_low_confidence(0.07) benign(0.003) TCGA-JY-A6FG-01 19 7689248 7689248 G A XAB2 Silent p.F302F 0.10 TCGA-JY-A6FG-01 19 9085519 9085519 G T MUC16 Missense_Mutation p.S2099Y 0.30 unknown(0) TCGA-JY-A6FG-01 1 103355076 103355076 G C COL11A1 Missense_Mutation p.Q1467E 0.35 unknown(0) TCGA-JY-A6FG-01 1 115268876 115268877 - AATC CSDE1 Frame_Shift_Ins p.F578Lfs*4 0.29 TCGA-JY-A6FG-01 1 118167490 118167490 G T FAM46C 3'UTR 0.28 TCGA-JY-A6FG-01 1 118514619 118514619 C A SPAG17 Missense_Mutation p.A2065S 0.38 tolerated(0.07) benign(0.343) TCGA-JY-A6FG-01 1 145074926 145074926 A G PDE4DIP 3'UTR 0.08 TCGA-JY-A6FG-01 1 145075752 145075752 C T PDE4DIP Silent p.T37T 0.07 TCGA-JY-A6FG-01 1 145542801 145542801 G A ITGA10 3'UTR 0.38 TCGA-JY-A6FG-01 1 146465946 146465946 C T NBPF12 Missense_Mutation p.S3274L 0.70 possibly_damaging(0.459) TCGA-JY-A6FG-01 1 152278839 152278841 TGT - FLG In_Frame_Del p.T2841del 0.18 TCGA-JY-A6FG-01 1 153905768 153905768 C T DENND4B Missense_Mutation p.D1120N 0.40 deleterious(0.04) probably_damaging(0.989) TCGA-JY-A6FG-01 1 154562755 154562755 G A ADAR Missense_Mutation p.R801C 0.40 deleterious(0) possibly_damaging(0.836) TCGA-JY-A6FG-01 1 155184007 155184007 A C MTX1 3'Flank 0.27 TCGA-JY-A6FG-01 1 160811229 160811229 G A CD244 Silent p.D147D 0.34 TCGA-JY-A6FG-01 1 169519183 169519183 C A F5 Missense_Mutation p.E489D 0.42 tolerated(0.12) benign(0.201) TCGA-JY-A6FG-01 1 171121381 171121381 G T FMO6P Missense_Mutation p.W387L 0.26 deleterious(0.01) benign(0) TCGA-JY-A6FG-01 1 182617405 182617405 G A RGS8 Missense_Mutation p.T94M 0.38 deleterious(0) probably_damaging(0.997) TCGA-JY-A6FG-01 1 18807852 18807852 G A KLHDC7A Missense_Mutation p.R126Q 0.33 tolerated(0.63) benign(0.001) TCGA-JY-A6FG-01 1 201294233 201294239 ATCATCA - PKP1 Frame_Shift_Del p.I688Tfs*45 0.57 TCGA-JY-A6FG-01 1 213061936 213061936 G A FLVCR1 Silent p.Q471Q 0.33 TCGA-JY-A6FG-01 1 23357117 23357118 - G KDM1A Frame_Shift_Ins p.E170Gfs*37 0.22 TCGA-JY-A6FG-01 1 247016531 247016531 C A AHCTF1 Missense_Mutation p.E1484D 0.46 tolerated(0.12) benign(0.045) TCGA-JY-A6FG-01 1 25291220 25291220 T - RUNX3 5'UTR 0.43 TCGA-JY-A6FG-01 1 27425582 27425582 C A SLC9A1 3'UTR 0.39 TCGA-JY-A6FG-01 1 29365939 29365939 G A EPB41 Splice_Site p.X546_splice 0.29 TCGA-JY-A6FG-01 1 35334651 35334651 G A DLGAP3 Silent p.G680G 0.43 TCGA-JY-A6FG-01 1 45484252 45484252 C A ZSWIM5 Missense_Mutation p.K1144N 0.29 deleterious(0) unknown(0) TCGA-JY-A6FG-01 1 47157529 47157529 C T EFCAB14 Silent p.K220K 0.13 TCGA-JY-A6FG-01 1 55307673 55307673 G T C1orf177 3'UTR 0.36 TCGA-JY-A6FG-01 1 71869849 71869849 T A NEGR1 3'UTR 0.31 TCGA-JY-A6FG-01 20 18165377 18165377 G A CSRP2BP Missense_Mutation p.V706I 0.29 deleterious(0.02) probably_damaging(0.984) TCGA-JY-A6FG-01 20 21327129 21327129 C T XRN2 Missense_Mutation p.R536W 0.05 deleterious(0.05) possibly_damaging(0.586) TCGA-JY-A6FG-01 20 377203 377203 C T TRIB3 Nonsense_Mutation p.R316* 0.37 TCGA-JY-A6FG-01 20 40033753 40033753 G T CHD6 Missense_Mutation p.A2543E 0.32 tolerated(0.09) possibly_damaging(0.451) TCGA-JY-A6FG-01 20 43057081 43057081 C T HNF4A Silent p.L412L 0.16 TCGA-JY-A6FG-01 20 43384310 43384310 C A RIMS4 3'Flank 0.30 TCGA-JY-A6FG-01 20 43607120 43607120 G A STK4 Silent p.E51E 0.40 TCGA-JY-A6FG-01 20 50287676 50287676 C T ATP9A Silent p.S386S 0.40 TCGA-JY-A6FG-01 20 57088995 57088995 C A APCDD1L Intron 0.33 TCGA-JY-A6FG-01 20 57484421 57484421 G A GNAS Missense_Mutation p.R844H 0.45 deleterious(0.01) probably_damaging(1) TCGA-JY-A6FG-01 20 62250679 62250679 G A GMEB2 Silent p.D24D 0.40 TCGA-JY-A6FG-01 20 9461068 9461068 C T PLCB4 3'UTR 0.32 TCGA-JY-A6FG-01 20 9560912 9560912 C A PAK7 Silent p.S290S 0.32 TCGA-JY-A6FG-01 21 22746285 22746285 G T NCAM2 Missense_Mutation p.A383S 0.43 tolerated(1) benign(0.316) TCGA-JY-A6FG-01 21 38845005 38845005 C A DYRK1A Nonsense_Mutation p.C10* 0.19 TCGA-JY-A6FG-01 21 47627461 47627461 C T LSS Missense_Mutation p.G450S 0.39 tolerated(0.05) benign(0.369) TCGA-JY-A6FG-01 21 47851826 47851826 G A PCNT Silent p.L2816L 0.55 TCGA-JY-A6FG-01 22 23237782 23237782 G A IGLL5 Missense_Mutation p.E185K 0.10 tolerated_low_confidence(0.11) benign(0.016) TCGA-JY-A6FG-01 22 25603066 25603066 C T CRYBB3 Missense_Mutation p.R175W 0.45 tolerated(0.09) possibly_damaging(0.679) TCGA-JY-A6FG-01 22 30126123 30126123 C A CABP7 3'UTR 0.46 TCGA-JY-A6FG-01 22 31303811 31303811 G C OSBP2 3'UTR 0.30 TCGA-JY-A6FG-01 22 38610952 38610952 G A MAFF 3'UTR 0.24 TCGA-JY-A6FG-01 22 38690214 38690214 C A CSNK1E Missense_Mutation p.E373D 0.38 deleterious_low_confidence(0.04) benign(0.079) TCGA-JY-A6FG-01 22 40391301 40391301 C A FAM83F Silent p.G85G 0.43 TCGA-JY-A6FG-01 22 46787549 46787549 G A CELSR1 Silent p.V2043V 0.10 TCGA-JY-A6FG-01 2 112786094 112786094 G T MERTK Missense_Mutation p.A885S 0.40 tolerated(0.07) benign(0.103) TCGA-JY-A6FG-01 2 118704391 118704391 T A CCDC93 Missense_Mutation p.E431V 0.32 tolerated(0.13) benign(0.001) TCGA-JY-A6FG-01 2 119599996 119599996 G C EN1 3'UTR 0.30 TCGA-JY-A6FG-01 2 132021653 132021653 C T POTEE Silent p.T875T 0.24 TCGA-JY-A6FG-01 2 138033559 138033559 C A THSD7B Silent p.G821G 0.44 TCGA-JY-A6FG-01 2 139308582 139308582 T A SPOPL Missense_Mutation p.F104I 0.31 deleterious(0.01) probably_damaging(1) TCGA-JY-A6FG-01 2 140989437 140989437 C G LRP1B 3'UTR 0.41 TCGA-JY-A6FG-01 2 141299445 141299445 C T LRP1B Silent p.R2430R 0.29 TCGA-JY-A6FG-01 2 164468131 164468132 - T FIGN Frame_Shift_Ins p.Y71Ifs*35 0.32 TCGA-JY-A6FG-01 2 170806482 170806482 G A UBR3 Missense_Mutation p.R1151H 0.26 tolerated(0.19) benign(0.007) TCGA-JY-A6FG-01 2 175436784 175436784 G A WIPF1 Missense_Mutation p.P250L 0.28 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FG-01 2 179527477 179527478 - T TTN Frame_Shift_Ins p.P12285Tfs*10 0.33 TCGA-JY-A6FG-01 2 185801665 185801665 A G ZNF804A Silent p.G514G 0.05 TCGA-JY-A6FG-01 2 186653633 186653633 G A FSIP2 Silent p.T679T 0.40 TCGA-JY-A6FG-01 2 192551686 192551686 T C NABP1 3'Flank 0.27 TCGA-JY-A6FG-01 2 203631961 203631961 G A FAM117B 3'UTR 0.31 TCGA-JY-A6FG-01 2 228566913 228566913 C A SLC19A3 Missense_Mutation p.G41V 0.16 deleterious(0) possibly_damaging(0.86) TCGA-JY-A6FG-01 2 231860901 231860901 G T SPATA3 5'UTR 0.38 TCGA-JY-A6FG-01 2 237150172 237150172 C T ASB18 Intron 0.50 TCGA-JY-A6FG-01 2 241513671 241513671 C T RNPEPL1 Silent p.F129F 0.39 TCGA-JY-A6FG-01 2 27551709 27551709 A G GTF3C2 Splice_Site p.X709_splice 0.31 TCGA-JY-A6FG-01 2 63272536 63272536 G T EHBP1 Intron 0.31 TCGA-JY-A6FG-01 2 63272537 63272537 A T EHBP1 Intron 0.30 TCGA-JY-A6FG-01 2 73677770 73677770 C A ALMS1 Silent p.G1371G 0.35 TCGA-JY-A6FG-01 2 86716722 86716722 A T KDM3A Silent p.G1171G 0.27 TCGA-JY-A6FG-01 2 96081612 96081612 A G FAHD2A 3'UTR 0.33 TCGA-JY-A6FG-01 2 97039388 97039388 C G NCAPH 3'UTR 0.07 TCGA-JY-A6FG-01 3 112324432 112324432 C T CCDC80 Silent p.S895S 0.38 TCGA-JY-A6FG-01 3 121341286 121341286 G T FBXO40 Missense_Mutation p.G337V 0.38 deleterious(0) probably_damaging(0.997) TCGA-JY-A6FG-01 3 122289345 122289345 G A DTX3L Missense_Mutation p.R660Q 0.35 deleterious(0) probably_damaging(0.983) TCGA-JY-A6FG-01 3 124390534 124390534 G A KALRN Missense_Mutation p.R335Q 0.39 deleterious(0.03) benign(0.059) TCGA-JY-A6FG-01 3 124627023 124627023 G A MUC13 Missense_Mutation p.H503Y 0.27 deleterious(0.01) benign(0.169) TCGA-JY-A6FG-01 3 129251606 129251606 G A RHO Missense_Mutation p.M309I 0.43 deleterious(0) benign(0.01) TCGA-JY-A6FG-01 3 134075624 134075624 G C AMOTL2 3'UTR 0.37 TCGA-JY-A6FG-01 3 15106578 15106578 C T MRPS25 Missense_Mutation p.E42K 0.13 tolerated(0.47) benign(0.051) TCGA-JY-A6FG-01 3 154139187 154139187 C T GPR149 Missense_Mutation p.E422K 0.47 tolerated(0.5) benign(0.427) TCGA-JY-A6FG-01 3 160037578 160037578 T C IFT80 Silent p.Q309Q 0.31 TCGA-JY-A6FG-01 3 160138588 160138588 C T SMC4 Silent p.L640L 0.33 TCGA-JY-A6FG-01 3 164735587 164735587 C A SI Missense_Mutation p.G1199C 0.38 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FG-01 3 17470011 17470011 C A TBC1D5 Missense_Mutation p.G33V 0.38 deleterious_low_confidence(0.03) benign(0.016) TCGA-JY-A6FG-01 3 175165132 175165132 G A NAALADL2 Silent p.A402A 0.35 TCGA-JY-A6FG-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.39 tolerated(0.44) benign(0.085) TCGA-JY-A6FG-01 3 185361542 185361542 A G IGF2BP2 3'UTR 0.35 TCGA-JY-A6FG-01 3 36779064 36779064 C A DCLK3 Missense_Mutation p.G363W 0.24 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 3 38006108 38006108 G A CTDSPL Missense_Mutation p.G105E 0.24 deleterious(0.02) possibly_damaging(0.546) TCGA-JY-A6FG-01 3 3886434 3886434 G A LRRN1 Missense_Mutation p.V37I 0.36 tolerated(0.08) benign(0.259) TCGA-JY-A6FG-01 3 39307429 39307429 C T CX3CR1 Missense_Mutation p.R223H 0.31 tolerated(0.86) possibly_damaging(0.857) TCGA-JY-A6FG-01 3 48482033 48482033 C T TMA7 Missense_Mutation p.P52L 0.28 tolerated(0.06) unknown(0) TCGA-JY-A6FG-01 3 49412922 49412922 T C RHOA Missense_Mutation p.Y34C 0.21 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 3 49459414 49459414 C T AMT Intron 0.46 TCGA-JY-A6FG-01 3 52291334 52291334 C A WDR82 3'UTR 0.36 TCGA-JY-A6FG-01 3 52773550 52773550 G A NEK4 Missense_Mutation p.P732S 0.29 tolerated(0.1) benign(0.259) TCGA-JY-A6FG-01 3 54798316 54798316 C T CACNA2D3 Missense_Mutation p.R440W 0.30 deleterious(0) probably_damaging(0.976) TCGA-JY-A6FG-01 3 57176535 57176535 C A IL17RD Intron 0.19 TCGA-JY-A6FG-01 3 57302616 57302616 G T ASB14 3'UTR 0.43 TCGA-JY-A6FG-01 3 9788006 9788006 G A BRPF1 Missense_Mutation p.R1116Q 0.14 tolerated(0.26) benign(0.285) TCGA-JY-A6FG-01 4 106159406 106159406 G T TET2 Intron 0.14 TCGA-JY-A6FG-01 4 118975223 118975223 G A NDST3 Missense_Mutation p.G53D 0.41 tolerated_low_confidence(0.56) benign(0.061) TCGA-JY-A6FG-01 4 139981500 139981500 C T ELF2 Missense_Mutation p.V367M 0.28 tolerated(0.27) benign(0.015) TCGA-JY-A6FG-01 4 141377824 141377825 - A RP11-542P2.1 Frame_Shift_Ins p.L309Ffs*15 0.37 TCGA-JY-A6FG-01 4 142642320 142642320 G T IL15 Intron 0.37 TCGA-JY-A6FG-01 4 164245462 164245462 C T NPY1R 3'UTR 0.37 TCGA-JY-A6FG-01 4 178896971 178896971 G T LINC01098 Missense_Mutation p.M58I 0.39 tolerated_low_confidence(0.37) benign(0.045) TCGA-JY-A6FG-01 4 40144359 40144359 G A N4BP2 Missense_Mutation p.D1618N 0.39 tolerated(0.16) benign(0.167) TCGA-JY-A6FG-01 4 41984704 41984704 C A DCAF4L1 Missense_Mutation p.L299M 0.31 deleterious(0.04) possibly_damaging(0.903) TCGA-JY-A6FG-01 4 54362344 54362344 C T LNX1 Missense_Mutation p.R399H 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-JY-A6FG-01 4 79176498 79176498 C T FRAS1 Missense_Mutation p.T191I 0.43 benign(0.012) TCGA-JY-A6FG-01 5 100147282 100147282 T C ST8SIA4 3'UTR 0.30 TCGA-JY-A6FG-01 5 110411672 110411672 G T TSLP Missense_Mutation p.R127M 0.49 deleterious(0.02) possibly_damaging(0.813) TCGA-JY-A6FG-01 5 126732405 126732405 G C MEGF10 Missense_Mutation p.Q198H 0.07 tolerated(0.51) benign(0.134) TCGA-JY-A6FG-01 5 127873307 127873307 G T FBN2 5'UTR 0.31 TCGA-JY-A6FG-01 5 134063057 134063057 G T SEC24A 3'UTR 0.46 TCGA-JY-A6FG-01 5 134782217 134782217 C T C5orf20 Nonsense_Mutation p.W194* 0.40 TCGA-JY-A6FG-01 5 139060532 139060532 G T CXXC5 Missense_Mutation p.A142S 0.40 tolerated(0.37) benign(0.031) TCGA-JY-A6FG-01 5 140215502 140215502 G A PCDHA7 Missense_Mutation p.A512T 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.548) TCGA-JY-A6FG-01 5 140594473 140594473 T C PCDHB13 Missense_Mutation p.F260L 0.42 deleterious_low_confidence(0.01) benign(0.002) TCGA-JY-A6FG-01 5 14358418 14358418 C T TRIO Silent p.N726N 0.29 TCGA-JY-A6FG-01 5 156638349 156638349 C T ITK Missense_Mutation p.R99W 0.17 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FG-01 5 167689643 167689643 G A TENM2 Missense_Mutation p.G2718E 0.38 deleterious(0) probably_damaging(0.95) TCGA-JY-A6FG-01 5 180480869 180480869 C T BTNL9 Intron 0.46 TCGA-JY-A6FG-01 5 54718789 54718789 C G SKIV2L2 Missense_Mutation p.L1019V 0.30 deleterious(0) probably_damaging(0.988) TCGA-JY-A6FG-01 5 82816578 82816578 C A VCAN Missense_Mutation p.T818K 0.27 deleterious(0.01) probably_damaging(0.972) TCGA-JY-A6FG-01 5 89981726 89981726 G C GPR98 Missense_Mutation p.G2135A 0.31 probably_damaging(0.995) TCGA-JY-A6FG-01 6 101847189 101847189 C A GRIK2 Silent p.V12V 0.44 TCGA-JY-A6FG-01 6 10400783 10400783 C A TFAP2A Missense_Mutation p.C308F 0.24 deleterious(0) possibly_damaging(0.878) TCGA-JY-A6FG-01 6 116987880 116987880 C G ZUFSP Missense_Mutation p.C159S 0.30 tolerated(0.05) probably_damaging(0.95) TCGA-JY-A6FG-01 6 127767686 127767686 G T KIAA0408 Missense_Mutation p.S593Y 0.52 tolerated(0.05) benign(0.048) TCGA-JY-A6FG-01 6 144110003 144110003 C T PHACTR2 Missense_Mutation p.R601C 0.41 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FG-01 6 145124230 145124230 C T UTRN Nonsense_Mutation p.R3102* 0.48 TCGA-JY-A6FG-01 6 152680459 152680459 C G SYNE1 Missense_Mutation p.E3478D 0.05 benign(0.001) TCGA-JY-A6FG-01 6 161514016 161514016 G A MAP3K4 Silent p.A1092A 0.46 TCGA-JY-A6FG-01 6 16328464 16328464 G A ATXN1 Silent p.S26S 0.24 TCGA-JY-A6FG-01 6 167794750 167794750 T G TCP10 Missense_Mutation p.R46S 0.43 tolerated(0.52) benign(0.017) TCGA-JY-A6FG-01 6 168323558 168323558 C T MLLT4 Silent p.H970H 0.38 TCGA-JY-A6FG-01 6 17291124 17291124 G T RBM24 Intron 0.39 TCGA-JY-A6FG-01 6 26204991 26204991 G C HIST1H4E Missense_Mutation p.R40P 0.31 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FG-01 6 27115308 27115308 G A HIST1H2AH 3'UTR 0.39 TCGA-JY-A6FG-01 6 30672262 30672262 C G MDC1 Missense_Mutation p.K1566N 0.37 deleterious(0.03) possibly_damaging(0.871) TCGA-JY-A6FG-01 6 30690400 30690401 TG - TUBB Frame_Shift_Del p.Y50Lfs*3 0.32 TCGA-JY-A6FG-01 6 31638955 31638955 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.V194M 0.32 tolerated(0.18) benign(0) TCGA-JY-A6FG-01 6 32975251 32975251 G A HLA-DOA Silent p.N150N 0.38 TCGA-JY-A6FG-01 6 33169642 33169642 G A SLC39A7 Missense_Mutation p.G178S 0.39 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 6 36291122 36291122 G T C6orf222 Missense_Mutation p.S473R 0.42 deleterious(0.01) possibly_damaging(0.883) TCGA-JY-A6FG-01 6 37281657 37281657 C T TBC1D22B Silent p.S385S 0.07 TCGA-JY-A6FG-01 6 38670905 38670905 C T GLO1 5'UTR 0.18 TCGA-JY-A6FG-01 6 39507786 39507786 C A KIF6 Missense_Mutation p.K546N 0.38 tolerated(0.3) benign(0.001) TCGA-JY-A6FG-01 6 44217808 44217811 CAGA - HSP90AB1 Frame_Shift_Del p.T190Sfs*3 0.29 TCGA-JY-A6FG-01 6 52051228 52051228 C T IL17A 5'UTR 0.31 TCGA-JY-A6FG-01 6 56918934 56918934 G A KIAA1586 Missense_Mutation p.R546K 0.20 tolerated(0.22) benign(0.002) TCGA-JY-A6FG-01 6 79692782 79692782 G A PHIP Nonsense_Mutation p.Q864* 0.36 TCGA-JY-A6FG-01 6 79692783 79692783 C A PHIP Silent p.L863L 0.36 TCGA-JY-A6FG-01 6 83832625 83832625 G T DOPEY1 Missense_Mutation p.A422S 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-JY-A6FG-01 7 106829747 106829747 C T HBP1 Missense_Mutation p.S259F 0.10 deleterious(0) probably_damaging(0.948) TCGA-JY-A6FG-01 7 110765260 110765260 T - LRRN3 3'UTR 0.29 TCGA-JY-A6FG-01 7 116199934 116199934 G T CAV1 3'UTR 0.36 TCGA-JY-A6FG-01 7 117246747 117246747 C A CFTR Missense_Mutation p.F976L 0.36 deleterious(0.01) probably_damaging(0.958) TCGA-JY-A6FG-01 7 127251730 127251730 G T PAX4 Missense_Mutation p.Q250K 0.38 tolerated(0.08) benign(0.269) TCGA-JY-A6FG-01 7 128491646 128491646 C A FLNC Missense_Mutation p.H1936N 0.37 deleterious(0.04) benign(0.048) TCGA-JY-A6FG-01 7 136936052 136936052 G T PTN Missense_Mutation p.L126M 0.30 deleterious(0.03) probably_damaging(0.985) TCGA-JY-A6FG-01 7 150093755 150093755 C T ZNF775 Silent p.A62A 0.25 TCGA-JY-A6FG-01 7 16255711 16255711 G T ISPD Missense_Mutation p.L411I 0.32 tolerated(0.26) benign(0.088) TCGA-JY-A6FG-01 7 2611943 2611943 G A IQCE Missense_Mutation p.R126K 0.32 tolerated(0.07) probably_damaging(0.935) TCGA-JY-A6FG-01 7 27140789 27140789 C G HOXA2 Missense_Mutation p.E229D 0.11 tolerated(0.26) benign(0.006) TCGA-JY-A6FG-01 7 64453295 64453295 G A ERV3-1 Missense_Mutation p.S37L 0.23 tolerated(0.08) benign(0.247) TCGA-JY-A6FG-01 7 64453327 64453327 C A ERV3-1 Missense_Mutation p.E26D 0.22 tolerated_low_confidence(0.76) benign(0.388) TCGA-JY-A6FG-01 7 64453347 64453347 A C ERV3-1 Missense_Mutation p.L20V 0.29 tolerated_low_confidence(1) unknown(0) TCGA-JY-A6FG-01 7 83591086 83591086 T C SEMA3A Silent p.L639L 0.38 TCGA-JY-A6FG-01 7 90895863 90895863 C A FZD1 Missense_Mutation p.F556L 0.36 tolerated(0.22) benign(0.267) TCGA-JY-A6FG-01 7 99933888 99933888 C T PILRB 5'UTR 0.36 TCGA-JY-A6FG-01 8 101074951 101074951 A G RGS22 Missense_Mutation p.L461P 0.15 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FG-01 8 104341947 104341947 A G FZD6 Missense_Mutation p.K536E 0.19 deleterious_low_confidence(0.02) benign(0.41) TCGA-JY-A6FG-01 8 113516192 113516192 G C CSMD3 Missense_Mutation p.P1637R 0.13 deleterious(0.03) possibly_damaging(0.582) TCGA-JY-A6FG-01 8 113529308 113529308 C T CSMD3 Missense_Mutation p.V1571I 0.20 tolerated(1) probably_damaging(0.936) TCGA-JY-A6FG-01 8 117778864 117778864 C T UTP23 Missense_Mutation p.H8Y 0.13 deleterious(0.05) possibly_damaging(0.837) TCGA-JY-A6FG-01 8 124140537 124140537 G A TBC1D31 Missense_Mutation p.R634Q 0.29 tolerated(0.18) benign(0.007) TCGA-JY-A6FG-01 8 124221765 124221765 C T FAM83A 3'UTR 0.13 TCGA-JY-A6FG-01 8 145138344 145138344 G A GPAA1 Missense_Mutation p.V103I 0.15 deleterious(0.03) possibly_damaging(0.829) TCGA-JY-A6FG-01 8 145947949 145947949 G C ZNF251 Missense_Mutation p.Q366E 0.13 deleterious(0.01) benign(0.149) TCGA-JY-A6FG-01 8 17159602 17159602 G A MTMR7 Intron 0.64 TCGA-JY-A6FG-01 8 52366270 52366270 G T PXDNL Missense_Mutation p.A353D 0.30 deleterious(0) probably_damaging(0.987) TCGA-JY-A6FG-01 8 62577903 62577903 C T ASPH Intron 0.28 TCGA-JY-A6FG-01 8 75171619 75171619 C T JPH1 Splice_Site p.X420_splice 0.47 TCGA-JY-A6FG-01 8 86019616 86019616 T G LRRCC1 Missense_Mutation p.M29R 0.27 deleterious(0) benign(0.418) TCGA-JY-A6FG-01 8 86119673 86119673 G A E2F5 Silent p.L188L 0.24 TCGA-JY-A6FG-01 9 100092636 100092636 A - CCDC180 Frame_Shift_Del p.K666Nfs*2 0.31 TCGA-JY-A6FG-01 9 101533323 101533323 G A ANKS6 Silent p.P609P 0.41 TCGA-JY-A6FG-01 9 101907161 101907161 G A TGFBR1 Missense_Mutation p.G374E 0.34 deleterious(0) probably_damaging(1) TCGA-JY-A6FG-01 9 130656797 130656797 G T ST6GALNAC6 Silent p.G97G 0.35 TCGA-JY-A6FG-01 9 6330472 6330472 C A TPD52L3 3'UTR 0.40 TCGA-JY-A6FG-01 9 73001740 73001740 C A KLF9 3'UTR 0.35 TCGA-JY-A6FG-01 9 74825650 74825650 A G GDA Silent p.T144T 0.29 TCGA-JY-A6FG-01 9 97847577 97847577 C G C9orf3 Intron 0.27 TCGA-JY-A6FG-01 X 108641818 108641818 G A GUCY2F Silent p.V745V 0.91 TCGA-JY-A6FG-01 X 128781629 128781629 C A APLN 3'UTR 0.82 TCGA-JY-A6FG-01 X 131338074 131338074 C A RAP2C 3'UTR 0.19 TCGA-JY-A6FG-01 X 151284037 151284037 C A RP11-1007I13.4 RNA 0.73 TCGA-JY-A6FG-01 X 15549481 15549481 T A BMX Missense_Mutation p.S324T 0.56 deleterious(0) probably_damaging(0.959) TCGA-JY-A6FG-01 X 83724053 83724053 C A HDX Silent p.G226G 0.80 TCGA-JY-A6FG-01 X 84532917 84532917 A G POF1B 3'UTR 0.79 TCGA-JY-A6FG-01 X 91873637 91873637 C A PCDH11X Missense_Mutation p.P1248T 0.65 tolerated_low_confidence(0.08) benign(0.018) TCGA-JY-A6FG-01 X 9905301 9905301 C T SHROOM2 Missense_Mutation p.P1239S 0.62 tolerated(0.1) probably_damaging(0.992) TCGA-JY-A6FH-01 10 129172366 129172366 G A DOCK1 Missense_Mutation p.G1167E 0.36 deleterious(0.01) probably_damaging(0.972) TCGA-JY-A6FH-01 10 16932470 16932470 G A CUBN Silent p.N2885N 0.41 TCGA-JY-A6FH-01 10 44873179 44873179 G A CXCL12 3'UTR 0.38 TCGA-JY-A6FH-01 10 48388265 48388265 G A RBP3 Silent p.P871P 0.32 TCGA-JY-A6FH-01 10 50951015 50951015 C T OGDHL Missense_Mutation p.R624H 0.41 deleterious(0) probably_damaging(0.996) TCGA-JY-A6FH-01 10 89622062 89622063 - A KLLN Frame_Shift_Ins p.R62Pfs*20 0.34 TCGA-JY-A6FH-01 11 110007878 110007878 A C ZC3H12C Missense_Mutation p.K171T 0.69 deleterious(0) probably_damaging(0.997) TCGA-JY-A6FH-01 11 123483491 123483491 C T GRAMD1B Nonsense_Mutation p.R505* 0.72 TCGA-JY-A6FH-01 11 124636820 124636821 - A MSANTD2 3'UTR 0.28 TCGA-JY-A6FH-01 11 124789254 124789254 T G HEPACAM 3'UTR 0.72 TCGA-JY-A6FH-01 11 21592431 21592431 A T NELL1 Missense_Mutation p.K701M 0.33 tolerated(0.16) benign(0.027) TCGA-JY-A6FH-01 11 40135924 40135924 A T LRRC4C Missense_Mutation p.I640N 0.45 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-JY-A6FH-01 11 44219380 44219380 A C EXT2 Missense_Mutation p.K469T 0.44 tolerated(0.31) benign(0.007) TCGA-JY-A6FH-01 11 494990 494991 - T RNH1 Frame_Shift_Ins p.N397Kfs*6 0.27 TCGA-JY-A6FH-01 11 55340159 55340159 G A OR4C16 Missense_Mutation p.A186T 0.45 deleterious(0.04) probably_damaging(0.98) TCGA-JY-A6FH-01 11 55579180 55579180 A C OR5L1 Missense_Mutation p.K80Q 0.45 deleterious(0.01) possibly_damaging(0.601) TCGA-JY-A6FH-01 11 55681965 55681965 A C OR5W2 Missense_Mutation p.L32V 0.43 deleterious(0) benign(0.213) TCGA-JY-A6FH-01 11 56020653 56020653 A C OR5T3 Missense_Mutation p.E326D 0.42 tolerated(1) unknown(0) TCGA-JY-A6FH-01 11 56128223 56128223 T G OR8J1 Silent p.S167S 0.36 TCGA-JY-A6FH-01 11 601669 601669 C T PHRF1 Nonsense_Mutation p.R374* 0.21 TCGA-JY-A6FH-01 11 62289421 62289421 G A AHNAK Silent p.G4156G 0.33 TCGA-JY-A6FH-01 11 67132440 67132440 G A CLCF1 3'UTR 0.09 TCGA-JY-A6FH-01 11 6891759 6891759 G A OR10A2 Silent p.K258K 0.38 TCGA-JY-A6FH-01 11 801445 801445 C T PIDD Silent p.Q494Q 0.30 TCGA-JY-A6FH-01 12 124403387 124403387 G T DNAH10 Missense_Mutation p.E3681D 0.69 benign(0.003) TCGA-JY-A6FH-01 12 125613984 125613984 G C AACS Missense_Mutation p.K509N 0.78 tolerated(0.28) benign(0.05) TCGA-JY-A6FH-01 12 21015743 21015743 T C SLCO1B3 Missense_Mutation p.S228P 0.14 deleterious(0) probably_damaging(0.988) TCGA-JY-A6FH-01 12 4758338 4758338 T C NDUFA9 Missense_Mutation p.S16P 0.79 tolerated(0.06) possibly_damaging(0.756) TCGA-JY-A6FH-01 12 66731973 66731973 C T HELB 3'UTR 0.67 TCGA-JY-A6FH-01 12 68701 68701 G A RP11-598F7.1 RNA 0.20 TCGA-JY-A6FH-01 12 90015477 90015477 G A ATP2B1 Missense_Mutation p.T479I 0.68 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FH-01 13 19748208 19748208 G A TUBA3C Missense_Mutation p.A383V 0.15 deleterious_low_confidence(0) possibly_damaging(0.833) TCGA-JY-A6FH-01 13 23905608 23905608 A C SACS Missense_Mutation p.L4136R 0.09 probably_damaging(0.996) TCGA-JY-A6FH-01 13 28141826 28141826 C T LNX2 Missense_Mutation p.G269E 0.04 deleterious(0.03) probably_damaging(1) TCGA-JY-A6FH-01 13 36049046 36049046 G T MAB21L1 3'UTR 0.75 TCGA-JY-A6FH-01 13 37678392 37678392 C T CSNK1A1L Silent p.V334V 0.06 TCGA-JY-A6FH-01 13 50018165 50018165 C T AL136218.1 Silent p.S3S 0.22 TCGA-JY-A6FH-01 13 50062692 50062692 C G SETDB2 Missense_Mutation p.L627V 0.07 tolerated(0.22) benign(0.113) TCGA-JY-A6FH-01 13 70681794 70681794 T A KLHL1 Missense_Mutation p.H13L 0.08 deleterious_low_confidence(0) benign(0.017) TCGA-JY-A6FH-01 14 107048877 107048877 A G IGHV3-53 Missense_Mutation p.V48A 0.34 deleterious_low_confidence(0) benign(0.039) TCGA-JY-A6FH-01 14 33293331 33293331 G A AKAP6 Silent p.L2104L 0.23 TCGA-JY-A6FH-01 14 51233526 51233526 C T NIN Missense_Mutation p.R506K 0.72 tolerated(0.36) benign(0.018) TCGA-JY-A6FH-01 14 54423342 54423342 G A BMP4 5'UTR 0.07 TCGA-JY-A6FH-01 15 23812263 23812263 T C MKRN3 Missense_Mutation p.L445P 0.54 tolerated(0.06) benign(0.007) TCGA-JY-A6FH-01 15 25328742 25328742 T C SNORD116-17 RNA 0.40 TCGA-JY-A6FH-01 15 25953235 25953235 T A ATP10A Missense_Mutation p.E821D 0.57 tolerated(0.28) benign(0.004) TCGA-JY-A6FH-01 15 33831636 33831636 C T RYR3 Silent p.L173L 0.34 TCGA-JY-A6FH-01 15 41961679 41961679 C T MGA Missense_Mutation p.S196F 0.09 deleterious(0) probably_damaging(1) TCGA-JY-A6FH-01 15 45713328 45713328 C A SPATA5L1 Missense_Mutation p.P728T 0.73 deleterious(0) probably_damaging(0.917) TCGA-JY-A6FH-01 15 54590124 54590124 G A UNC13C Silent p.E1368E 0.38 TCGA-JY-A6FH-01 15 75113511 75113512 - GACAATG LMAN1L Frame_Shift_Ins p.K338Tfs*15 0.13 TCGA-JY-A6FH-01 15 75115035 75115035 C T LMAN1L Missense_Mutation p.A395V 0.12 tolerated(0.18) benign(0.215) TCGA-JY-A6FH-01 16 56782289 56782289 C T NUP93 Missense_Mutation p.R44C 0.73 tolerated(0.19) benign(0.003) TCGA-JY-A6FH-01 16 61689518 61689518 T G CDH8 Missense_Mutation p.S588R 0.20 deleterious(0.01) probably_damaging(0.929) TCGA-JY-A6FH-01 16 7760805 7760805 A C RBFOX1 3'UTR 0.77 TCGA-JY-A6FH-01 16 86614298 86614298 T G FOXL1 3'UTR 0.58 TCGA-JY-A6FH-01 17 15935569 15935569 A T NCOR1 3'UTR 0.91 TCGA-JY-A6FH-01 17 16456371 16456371 A C ZNF287 Missense_Mutation p.L362R 0.71 tolerated(0.07) benign(0.049) TCGA-JY-A6FH-01 17 16593966 16593966 C A CCDC144A Silent p.L84L 0.81 TCGA-JY-A6FH-01 17 27590550 27590550 G A NUFIP2 3'UTR 0.20 TCGA-JY-A6FH-01 17 36920394 36920394 A T PSMB3 Missense_Mutation p.R198W 0.47 deleterious(0) probably_damaging(0.99) TCGA-JY-A6FH-01 17 40861907 40861907 C T EZH1 Missense_Mutation p.D484N 0.07 tolerated(0.22) benign(0) TCGA-JY-A6FH-01 17 46703145 46703145 C G HOXB9 Missense_Mutation p.G163R 0.83 tolerated(0.19) probably_damaging(0.936) TCGA-JY-A6FH-01 17 50235556 50235556 A G CA10 5'UTR 0.83 TCGA-JY-A6FH-01 17 56357278 56357278 C T MPO Missense_Mutation p.A116T 0.17 deleterious(0.02) possibly_damaging(0.754) TCGA-JY-A6FH-01 17 67218024 67218024 G A ABCA10 Missense_Mutation p.A71V 0.40 tolerated(0.32) benign(0.01) TCGA-JY-A6FH-01 17 74538711 74538711 G A PRCD 3'UTR 0.70 TCGA-JY-A6FH-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.82 deleterious(0) probably_damaging(0.998) TCGA-JY-A6FH-01 18 21140316 21140316 G A NPC1 Missense_Mutation p.P254S 0.28 deleterious(0.04) probably_damaging(0.934) TCGA-JY-A6FH-01 18 2937789 2937789 A C LPIN2 Missense_Mutation p.S357A 0.38 tolerated(0.61) benign(0.003) TCGA-JY-A6FH-01 18 32887284 32887284 C T ZNF271 RNA 0.64 TCGA-JY-A6FH-01 18 56892729 56892729 T G GRP Missense_Mutation p.L49V 0.69 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FH-01 18 7567766 7567766 C T PTPRM 5'UTR 0.13 TCGA-JY-A6FH-01 19 12976154 12976154 G A MAST1 Missense_Mutation p.A555T 0.78 deleterious(0) probably_damaging(1) TCGA-JY-A6FH-01 19 22270892 22270892 A C ZNF257 Silent p.R114R 0.82 TCGA-JY-A6FH-01 19 35941156 35941156 G A FFAR2 Silent p.R180R 0.08 TCGA-JY-A6FH-01 19 38894313 38894313 G A FAM98C Missense_Mutation p.G110S 0.08 tolerated(0.31) benign(0.236) TCGA-JY-A6FH-01 19 48894802 48894802 C T KDELR1 5'UTR 0.89 TCGA-JY-A6FH-01 19 51986386 51986386 C G CEACAM18 Silent p.L324L 0.92 TCGA-JY-A6FH-01 1 118502178 118502178 C T WDR3 3'UTR 0.33 TCGA-JY-A6FH-01 1 12939505 12939505 A C PRAMEF4 Missense_Mutation p.F433V 0.46 tolerated(0.09) probably_damaging(0.999) TCGA-JY-A6FH-01 1 12979871 12979871 T G PRAMEF7 Missense_Mutation p.L355V 0.30 probably_damaging(0.998) TCGA-JY-A6FH-01 1 152882831 152882831 A G IVL Silent p.P186P 0.30 TCGA-JY-A6FH-01 1 154542074 154542074 C A CHRNB2 Silent p.L67L 0.31 TCGA-JY-A6FH-01 1 155232982 155232982 G C CLK2 3'UTR 0.43 TCGA-JY-A6FH-01 1 157804258 157804258 A C CD5L Silent p.P219P 0.32 TCGA-JY-A6FH-01 1 158152065 158152065 T G CD1D Missense_Mutation p.L191R 0.43 deleterious(0.01) possibly_damaging(0.488) TCGA-JY-A6FH-01 1 158576277 158576277 T C OR10Z1 Missense_Mutation p.F17L 0.59 deleterious(0) probably_damaging(0.97) TCGA-JY-A6FH-01 1 160341007 160341007 C T NHLH1 3'UTR 0.56 TCGA-JY-A6FH-01 1 174190247 174190247 A G RABGAP1L Silent p.P92P 0.36 TCGA-JY-A6FH-01 1 176564726 176564726 C G PAPPA2 Silent p.P662P 0.43 TCGA-JY-A6FH-01 1 200017441 200017441 C T NR5A2 Missense_Mutation p.A202V 0.48 tolerated(0.2) benign(0.011) TCGA-JY-A6FH-01 1 202119449 202119449 G A PTPN7 Missense_Mutation p.R432W 0.19 deleterious(0) probably_damaging(1) TCGA-JY-A6FH-01 1 222717196 222717196 G A HHIPL2 Silent p.P219P 0.08 TCGA-JY-A6FH-01 1 228033841 228033841 C T PRSS38 Missense_Mutation p.L305F 0.33 tolerated(0.18) benign(0.018) TCGA-JY-A6FH-01 1 229631291 229631291 C A NUP133 Missense_Mutation p.A333S 0.28 tolerated(0.66) benign(0.034) TCGA-JY-A6FH-01 1 242253189 242253189 G A PLD5 Silent p.D526D 0.47 TCGA-JY-A6FH-01 1 242277295 242277295 T C PLD5 Missense_Mutation p.S323G 0.43 deleterious(0) possibly_damaging(0.683) TCGA-JY-A6FH-01 1 248112865 248112865 G A OR2L8 Missense_Mutation p.A236T 0.39 deleterious(0.02) possibly_damaging(0.718) TCGA-JY-A6FH-01 1 33841079 33841079 C T PHC2 Missense_Mutation p.S21N 0.33 tolerated_low_confidence(0.06) benign(0.001) TCGA-JY-A6FH-01 1 34329700 34329700 A C HMGB4 5'UTR 0.45 TCGA-JY-A6FH-01 1 35859302 35859302 C T ZMYM4 Missense_Mutation p.S958F 0.42 deleterious(0) probably_damaging(0.938) TCGA-JY-A6FH-01 1 46751588 46751588 G A LRRC41 Missense_Mutation p.P314L 0.24 tolerated(0.43) benign(0.003) TCGA-JY-A6FH-01 1 6530819 6530819 G T PLEKHG5 Silent p.R585R 0.30 TCGA-JY-A6FH-01 1 66031227 66031227 A G LEPR Splice_Site 0.52 TCGA-JY-A6FH-01 1 78383667 78383667 A T NEXN Missense_Mutation p.D81V 0.38 deleterious(0) possibly_damaging(0.653) TCGA-JY-A6FH-01 1 89726351 89726351 A G GBP5 3'UTR 0.07 TCGA-JY-A6FH-01 20 29976781 29976781 A T DEFB119 3'UTR 0.47 TCGA-JY-A6FH-01 20 49208889 49208889 G T FAM65C Silent p.R853R 0.44 TCGA-JY-A6FH-01 22 51065261 51065261 C T ARSA Splice_Site p.X228_splice 0.88 TCGA-JY-A6FH-01 2 101654015 101654016 - CTGCCTGA TBC1D8 Frame_Shift_Ins p.S464Afs*14 0.25 TCGA-JY-A6FH-01 2 107040103 107040103 T G RGPD3 Missense_Mutation p.K1440N 0.40 deleterious(0.04) probably_damaging(0.995) TCGA-JY-A6FH-01 2 114335558 114335558 G C FAM138B Splice_Site 0.26 TCGA-JY-A6FH-01 2 128878801 128878801 C G UGGT1 Missense_Mutation p.I334M 0.49 deleterious(0) possibly_damaging(0.86) TCGA-JY-A6FH-01 2 133540288 133540288 T A NCKAP5 Missense_Mutation p.S1366C 0.24 deleterious(0.02) probably_damaging(0.922) TCGA-JY-A6FH-01 2 136399158 136399158 C T R3HDM1 Silent p.I424I 0.36 TCGA-JY-A6FH-01 2 162280635 162280635 A G TBR1 Missense_Mutation p.E649G 0.43 deleterious(0.05) benign(0) TCGA-JY-A6FH-01 2 166845737 166845737 A C SCN1A 3'UTR 0.26 TCGA-JY-A6FH-01 2 179407890 179407890 A G TTN Silent p.G32270G 0.27 TCGA-JY-A6FH-01 2 179583141 179583141 A C TTN Missense_Mutation p.L8231R 0.29 TCGA-JY-A6FH-01 2 206869709 206869709 A G INO80D Missense_Mutation p.S823P 0.38 tolerated_low_confidence(0.07) benign(0.108) TCGA-JY-A6FH-01 2 227779064 227779064 C T RHBDD1 Nonsense_Mutation p.R285* 0.17 TCGA-JY-A6FH-01 2 229889189 229889189 A - PID1 3'UTR 0.48 TCGA-JY-A6FH-01 2 70890714 70890714 G A ADD2 Missense_Mutation p.T675M 0.52 tolerated(0.11) possibly_damaging(0.719) TCGA-JY-A6FH-01 2 9547506 9547506 C T ITGB1BP1 Intron 0.34 TCGA-JY-A6FH-01 3 112996962 112996962 C T BOC Silent p.D520D 0.33 TCGA-JY-A6FH-01 3 113724645 113724645 T G KIAA1407 Missense_Mutation p.E526D 0.32 tolerated(0.14) benign(0.198) TCGA-JY-A6FH-01 3 113878649 113878649 C T DRD3 Missense_Mutation p.M112I 0.21 deleterious(0.03) probably_damaging(0.997) TCGA-JY-A6FH-01 3 119132712 119132712 G A ARHGAP31 Missense_Mutation p.D646N 0.40 deleterious(0.05) probably_damaging(0.929) TCGA-JY-A6FH-01 3 121395812 121395812 G A GOLGB1 Silent p.L3035L 0.43 TCGA-JY-A6FH-01 3 128204731 128204731 C A GATA2 Missense_Mutation p.G237V 0.15 tolerated(0.07) benign(0.12) TCGA-JY-A6FH-01 3 159606665 159606665 C T IQCJ-SCHIP1 Silent p.T493T 0.48 TCGA-JY-A6FH-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.24 tolerated(0.36) benign(0.4) TCGA-JY-A6FH-01 3 186395083 186395083 C A HRG Missense_Mutation p.A330D 0.41 tolerated(0.21) benign(0.07) TCGA-JY-A6FH-01 3 186937527 186937527 C G MASP1 3'UTR 0.38 TCGA-JY-A6FH-01 3 190573557 190573557 C T GMNC Missense_Mutation p.E178K 0.44 tolerated(0.07) benign(0.144) TCGA-JY-A6FH-01 3 45786006 45786006 C T SACM1L 3'UTR 0.39 TCGA-JY-A6FH-01 3 47677562 47677562 T C SMARCC1 Missense_Mutation p.K814R 0.43 tolerated(0.23) benign(0.005) TCGA-JY-A6FH-01 3 51419494 51419494 A G DOCK3 3'UTR 0.06 TCGA-JY-A6FH-01 3 52556178 52556178 C T STAB1 Missense_Mutation p.R2133C 0.05 tolerated(0.06) possibly_damaging(0.776) TCGA-JY-A6FH-01 3 62388814 62388814 T C CADPS Missense_Mutation p.D1275G 0.07 deleterious(0) possibly_damaging(0.539) TCGA-JY-A6FH-01 3 62570860 62570860 C G CADPS Missense_Mutation p.G526A 0.31 deleterious(0) possibly_damaging(0.769) TCGA-JY-A6FH-01 3 74385746 74385746 A C CNTN3 Silent p.T476T 0.51 TCGA-JY-A6FH-01 4 122137649 122137650 - G TNIP3 Frame_Shift_Ins p.C4Lfs*9 0.08 TCGA-JY-A6FH-01 4 147179885 147179885 A C SLC10A7 Missense_Mutation p.L318V 0.39 deleterious(0.05) probably_damaging(0.918) TCGA-JY-A6FH-01 4 177105906 177105906 T C SPATA4 3'UTR 0.14 TCGA-JY-A6FH-01 4 36179500 36179500 T G ARAP2 Missense_Mutation p.K602N 0.30 deleterious(0) probably_damaging(0.987) TCGA-JY-A6FH-01 4 46370903 46370903 T C GABRA2 Intron 0.33 TCGA-JY-A6FH-01 4 75178008 75178008 G C EPGN Missense_Mutation p.E80D 0.68 tolerated(0.34) benign(0.002) TCGA-JY-A6FH-01 4 96761634 96761634 C T PDHA2 Silent p.H111H 0.09 TCGA-JY-A6FH-01 5 110411739 110411739 T G TSLP Silent p.R149R 0.80 TCGA-JY-A6FH-01 5 112151228 112151229 - T APC Frame_Shift_Ins p.L292Ffs*4 0.36 TCGA-JY-A6FH-01 5 1242967 1242967 T G SLC6A18 Missense_Mutation p.F374V 0.22 tolerated(0.16) probably_damaging(0.985) TCGA-JY-A6FH-01 5 136311005 136311005 T G SPOCK1 3'UTR 0.67 TCGA-JY-A6FH-01 5 140243001 140243001 C T AC005609.1 5'UTR 0.24 TCGA-JY-A6FH-01 5 157052840 157052840 A G SOX30 3'UTR 0.78 TCGA-JY-A6FH-01 5 31508814 31508814 C G DROSHA Missense_Mutation p.V501L 0.19 tolerated(0.3) benign(0.116) TCGA-JY-A6FH-01 5 35641562 35641562 C A SPEF2 Missense_Mutation p.S64Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FH-01 5 45260874 45260874 A G HCN1 3'UTR 0.27 TCGA-JY-A6FH-01 5 492104 492104 G A SLC9A3 Silent p.I98I 0.24 TCGA-JY-A6FH-01 5 5223040 5223040 G A ADAMTS16 Intron 0.28 TCGA-JY-A6FH-01 6 28402405 28402405 T A ZSCAN23 Missense_Mutation p.N336I 0.46 tolerated(0.06) possibly_damaging(0.462) TCGA-JY-A6FH-01 6 42848666 42848666 G A RPL7L1 Missense_Mutation p.A28T 0.36 deleterious(0.03) probably_damaging(0.996) TCGA-JY-A6FH-01 6 51613257 51613257 A C PKHD1 Missense_Mutation p.L3053V 0.37 tolerated(0.08) possibly_damaging(0.536) TCGA-JY-A6FH-01 6 65301235 65301235 T G EYS Missense_Mutation p.N1509H 0.72 tolerated_low_confidence(0.12) probably_damaging(0.972) TCGA-JY-A6FH-01 6 66200490 66200490 A G EYS Missense_Mutation p.S287P 0.84 tolerated(0.15) probably_damaging(0.959) TCGA-JY-A6FH-01 6 75804854 75804854 C A COL12A1 Missense_Mutation p.K2873N 0.83 probably_damaging(0.999) TCGA-JY-A6FH-01 7 100680772 100680772 T A MUC17 Silent p.S2025S 0.41 TCGA-JY-A6FH-01 7 100680773 100680773 C A MUC17 Missense_Mutation p.P2026T 0.42 unknown(0) TCGA-JY-A6FH-01 7 141897528 141897528 T C RP11-1220K2.2 Silent p.T1622T 0.09 TCGA-JY-A6FH-01 7 142326552 142326552 A C TRBV19 5'UTR 0.67 TCGA-JY-A6FH-01 7 142569197 142569197 C T TRPV6 3'UTR 0.62 TCGA-JY-A6FH-01 7 20721270 20721270 A G ABCB5 Missense_Mutation p.Y617C 0.29 tolerated(0.05) probably_damaging(0.919) TCGA-JY-A6FH-01 7 20766683 20766683 G A ABCB5 Silent p.E882E 0.20 TCGA-JY-A6FH-01 7 38468129 38468129 T A AMPH Intron 0.22 TCGA-JY-A6FH-01 7 41730129 41730129 T C INHBA Missense_Mutation p.K134E 0.36 tolerated(0.85) benign(0.096) TCGA-JY-A6FH-01 7 48278946 48278946 T G ABCA13 Missense_Mutation p.S336A 0.45 benign(0.01) TCGA-JY-A6FH-01 7 49977058 49977058 A C ZPBP 3'UTR 0.42 TCGA-JY-A6FH-01 7 70597949 70597949 A G WBSCR17 Missense_Mutation p.H54R 0.82 tolerated_low_confidence(0.79) benign(0) TCGA-JY-A6FH-01 8 101936481 101936481 A G YWHAZ Missense_Mutation p.I155T 0.25 tolerated_low_confidence(0.13) possibly_damaging(0.688) TCGA-JY-A6FH-01 8 118170001 118170001 G A SLC30A8 Missense_Mutation p.E164K 0.39 tolerated(0.16) possibly_damaging(0.555) TCGA-JY-A6FH-01 8 12586755 12586755 C T LONRF1 Missense_Mutation p.R592K 0.27 deleterious(0) probably_damaging(0.999) TCGA-JY-A6FH-01 8 131922079 131922079 G A ADCY8 Silent p.D505D 0.39 TCGA-JY-A6FH-01 8 142225916 142225916 G C SLC45A4 Missense_Mutation p.S577C 0.12 deleterious(0.03) benign(0.222) TCGA-JY-A6FH-01 8 1846630 1846630 C T ARHGEF10 Missense_Mutation p.T530M 0.80 deleterious(0) probably_damaging(1) TCGA-JY-A6FH-01 8 79515110 79515110 G C PKIA 3'UTR 0.56 TCGA-JY-A6FH-01 9 119161743 119161743 A G PAPPA-AS1 5'UTR 0.35 TCGA-JY-A6FH-01 9 130152998 130152998 G C GARNL3 Missense_Mutation p.S941T 0.33 tolerated_low_confidence(0.21) benign(0.004) TCGA-JY-A6FH-01 9 133760107 133760107 G A ABL1 Silent p.P829P 0.42 TCGA-JY-A6FH-01 9 136628052 136628052 C A VAV2 3'UTR 0.45 TCGA-JY-A6FH-01 9 137687132 137687132 C T COL5A1 Missense_Mutation p.R924W 0.57 unknown(0) TCGA-JY-A6FH-01 9 139836975 139836975 C T FBXW5 Intron 0.22 TCGA-JY-A6FH-01 9 14722203 14722203 T G CER1 Missense_Mutation p.E156D 0.41 tolerated(0.11) benign(0.358) TCGA-JY-A6FH-01 9 19121077 19121077 G A PLIN2 Silent p.S132S 0.10 TCGA-JY-A6FH-01 9 37541505 37541505 C G FBXO10 Missense_Mutation p.K87N 0.30 tolerated(0.09) possibly_damaging(0.879) TCGA-JY-A6FH-01 9 38016031 38016031 T G SHB Missense_Mutation p.Y272S 0.40 deleterious(0.01) probably_damaging(0.957) TCGA-JY-A6FH-01 X 111698082 111698082 A G ZCCHC16 Silent p.Q42Q 0.70 TCGA-JY-A6FH-01 X 114143010 114143010 T G HTR2C 3'UTR 0.93 TCGA-JY-A6FH-01 X 138865369 138865369 T C ATP11C Missense_Mutation p.N578S 0.86 tolerated(0.94) benign(0.002) TCGA-JY-A6FH-01 X 151122015 151122015 A C GABRE 3'UTR 0.89 TCGA-JY-A6FH-01 X 47039309 47039309 G A RBM10 Missense_Mutation p.S311N 0.88 deleterious(0.01) benign(0.224) TCGA-JY-A6FH-01 X 53262659 53262660 - C IQSEC2 3'UTR 0.08 TCGA-JY-A938-01 10 101716851 101716851 G A DNMBP Missense_Mutation p.S127F 0.16 deleterious(0) probably_damaging(0.966) TCGA-JY-A938-01 10 125426161 125426161 C T GPR26 Missense_Mutation p.R80C 0.21 deleterious(0) possibly_damaging(0.901) TCGA-JY-A938-01 10 55626442 55626442 T A PCDH15 Missense_Mutation p.D1226V 0.23 deleterious(0) probably_damaging(1) TCGA-JY-A938-01 10 85982250 85982250 G A LRIT2 Missense_Mutation p.S360L 0.16 tolerated(0.18) benign(0.016) TCGA-JY-A938-01 10 85997164 85997164 C T LRIT1 Missense_Mutation p.R134Q 0.30 deleterious(0.04) possibly_damaging(0.499) TCGA-JY-A938-01 11 102937291 102937291 T G DCUN1D5 Missense_Mutation p.D116A 0.19 deleterious(0) possibly_damaging(0.831) TCGA-JY-A938-01 11 108213982 108213982 G C ATM Missense_Mutation p.E2768Q 0.09 deleterious(0.04) possibly_damaging(0.806) TCGA-JY-A938-01 11 117376192 117376192 C T DSCAML1 Missense_Mutation p.R740Q 0.32 tolerated(0.18) benign(0.254) TCGA-JY-A938-01 11 118772250 118772250 C T BCL9L Silent p.A734A 0.21 TCGA-JY-A938-01 11 36293071 36293071 G A COMMD9 3'Flank 0.29 TCGA-JY-A938-01 11 4790702 4790702 A G OR51F1 Missense_Mutation p.L149P 0.27 deleterious(0.04) benign(0.049) TCGA-JY-A938-01 11 55588015 55588015 G A OR5D18 Missense_Mutation p.E304K 0.29 tolerated(1) benign(0) TCGA-JY-A938-01 11 57564430 57564430 A - CTNND1 Frame_Shift_Del p.T308Lfs*17 0.13 TCGA-JY-A938-01 11 65481111 65481111 G A KAT5 Silent p.E196E 0.24 TCGA-JY-A938-01 11 69589540 69589540 C T FGF4 Missense_Mutation p.G105S 0.24 tolerated(0.63) possibly_damaging(0.75) TCGA-JY-A938-01 11 82924198 82924198 A G ANKRD42 Intron 0.31 TCGA-JY-A938-01 11 85372766 85372766 G A CREBZF 3'UTR 0.06 TCGA-JY-A938-01 11 88242134 88242134 C T GRM5 Missense_Mutation p.V1089I 0.24 tolerated_low_confidence(0.4) benign(0.032) TCGA-JY-A938-01 11 89536880 89536880 T G TRIM49 Missense_Mutation p.T165P 0.13 tolerated(0.15) benign(0.043) TCGA-JY-A938-01 11 93431665 93431665 G T KIAA1731 Missense_Mutation p.R1196I 0.33 tolerated(0.11) benign(0.012) TCGA-JY-A938-01 12 102061599 102061599 C T MYBPC1 Missense_Mutation p.R809C 0.09 deleterious(0) probably_damaging(1) TCGA-JY-A938-01 12 123424682 123424682 G A ABCB9 Silent p.Y573Y 0.24 TCGA-JY-A938-01 12 64724796 64724796 G A C12orf56 Silent p.N144N 0.36 TCGA-JY-A938-01 12 69967832 69967832 C A FRS2 Missense_Mutation p.N208K 0.10 tolerated(0.64) benign(0.006) TCGA-JY-A938-01 12 7241257 7241257 C G C1R Missense_Mutation p.Q328H 0.06 tolerated(0.37) benign(0.093) TCGA-JY-A938-01 12 7966969 7966969 G A SLC2A14 Silent p.D502D 0.43 TCGA-JY-A938-01 13 101714386 101714386 T A NALCN Silent p.I1563I 0.16 TCGA-JY-A938-01 13 113898809 113898809 C A CUL4A Silent p.I438I 0.14 TCGA-JY-A938-01 13 35751188 35751188 T C NBEA Missense_Mutation p.L1537P 0.19 deleterious(0) probably_damaging(0.99) TCGA-JY-A938-01 13 66878550 66878550 G A PCDH9 3'UTR 0.12 TCGA-JY-A938-01 14 100135215 100135215 G T HHIPL1 Intron 0.11 TCGA-JY-A938-01 14 105179229 105179229 A C INF2 Missense_Mutation p.E892A 0.10 tolerated(0.07) unknown(0) TCGA-JY-A938-01 14 33300007 33300007 T G AKAP6 3'UTR 0.23 TCGA-JY-A938-01 14 39555001 39555008 CAGAGGAA TC SEC23A In_Frame_Del p.S263_G265delinsR 0.19 TCGA-JY-A938-01 14 52188702 52188702 G A FRMD6 Missense_Mutation p.E466K 0.13 tolerated(0.11) probably_damaging(0.91) TCGA-JY-A938-01 14 72137868 72137868 C T SIPA1L1 Missense_Mutation p.S763F 0.15 deleterious(0) possibly_damaging(0.832) TCGA-JY-A938-01 14 73190360 73190360 T G DPF3 Missense_Mutation p.K169T 0.21 deleterious(0) possibly_damaging(0.859) TCGA-JY-A938-01 14 74825015 74825015 G A VRTN Missense_Mutation p.R510H 0.20 deleterious(0.04) possibly_damaging(0.87) TCGA-JY-A938-01 14 94964377 94964377 T A SERPINA12 Missense_Mutation p.I120F 0.16 deleterious(0.01) probably_damaging(0.938) TCGA-JY-A938-01 15 102303909 102303909 C G DNM1P47 RNA 0.41 TCGA-JY-A938-01 15 20193172 20193172 C A IGHV3OR15-7 Missense_Mutation p.Q32H 0.14 deleterious_low_confidence(0.01) benign(0.379) TCGA-JY-A938-01 15 64455069 64455069 C G PPIB Silent p.G39G 0.27 TCGA-JY-A938-01 15 93015519 93015519 G A C15orf32 Silent p.A47A 0.23 TCGA-JY-A938-01 16 21623996 21623996 G A METTL9 Missense_Mutation p.E66K 0.26 tolerated(0.14) possibly_damaging(0.449) TCGA-JY-A938-01 16 30536262 30536262 G A ZNF768 Missense_Mutation p.P400L 0.27 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-JY-A938-01 16 31021780 31021780 G A STX1B 5'UTR 0.15 TCGA-JY-A938-01 17 16630859 16630859 G T CCDC144A Missense_Mutation p.R637I 0.29 deleterious(0) possibly_damaging(0.766) TCGA-JY-A938-01 17 1792008 1792008 C T RPA1 Missense_Mutation p.R472C 0.29 deleterious(0) probably_damaging(0.979) TCGA-JY-A938-01 17 18630877 18630877 T A TRIM16L Missense_Mutation p.F3I 0.08 deleterious(0) probably_damaging(0.999) TCGA-JY-A938-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.40 deleterious(0) probably_damaging(0.994) TCGA-JY-A938-01 17 38189432 38189432 C T MED24 Silent p.A233A 0.49 TCGA-JY-A938-01 17 3912906 3912906 G A ZZEF1 Missense_Mutation p.R2909C 0.30 deleterious(0.01) possibly_damaging(0.899) TCGA-JY-A938-01 17 5076764 5076764 T C USP6 3'UTR 0.20 TCGA-JY-A938-01 17 7577559 7577559 G A TP53 Missense_Mutation p.S241F 0.26 deleterious(0) probably_damaging(1) TCGA-JY-A938-01 17 80202455 80202455 C A CSNK1D 3'UTR 0.25 TCGA-JY-A938-01 18 30795550 30795550 T A CCDC178 Missense_Mutation p.E681V 0.18 deleterious(0) probably_damaging(0.993) TCGA-JY-A938-01 18 63548089 63548089 G A CDH7 Missense_Mutation p.A773T 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-JY-A938-01 18 9279577 9279577 C T ANKRD12 Missense_Mutation p.R1980C 0.16 deleterious(0) probably_damaging(1) TCGA-JY-A938-01 18 9281049 9281049 C A ANKRD12 Silent p.I2038I 0.16 TCGA-JY-A938-01 19 10224819 10224819 C T PPAN-P2RY11 Missense_Mutation p.A597V 0.29 tolerated_low_confidence(0.29) benign(0) TCGA-JY-A938-01 19 10367465 10367465 C A MRPL4 Silent p.R137R 0.29 TCGA-JY-A938-01 19 13208396 13208396 C T NFIX 3'Flank 0.22 TCGA-JY-A938-01 19 15298067 15298067 G A NOTCH3 Silent p.I563I 0.16 TCGA-JY-A938-01 19 17441288 17441288 G A ANO8 Missense_Mutation p.T340M 0.17 deleterious(0) probably_damaging(0.999) TCGA-JY-A938-01 19 20235983 20235983 C T CTC-260E6.2 RNA 0.15 TCGA-JY-A938-01 19 23328707 23328707 A G ZNF730 Silent p.E287E 0.19 TCGA-JY-A938-01 19 33355051 33355051 G T SLC7A9 Silent p.G143G 0.20 TCGA-JY-A938-01 19 3494029 3494029 G A DOHH Silent p.I116I 0.16 TCGA-JY-A938-01 19 35719355 35719355 C T FAM187B Missense_Mutation p.E77K 0.20 tolerated(0.73) benign(0.281) TCGA-JY-A938-01 19 39691112 39691112 C A NCCRP1 Silent p.G225G 0.15 TCGA-JY-A938-01 19 39955492 39955492 G A SUPT5H Missense_Mutation p.V227M 0.22 deleterious(0) probably_damaging(0.922) TCGA-JY-A938-01 19 41062986 41062986 C T SPTBN4 Missense_Mutation p.R1783W 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-JY-A938-01 19 44470960 44470960 C T ZNF221 Nonsense_Mutation p.R436* 0.23 TCGA-JY-A938-01 19 48342943 48342943 G A CRX Missense_Mutation p.A207T 0.14 deleterious(0.03) benign(0.107) TCGA-JY-A938-01 19 50461952 50461952 G A SIGLEC11 Silent p.H437H 0.14 TCGA-JY-A938-01 19 51135871 51135871 G T SYT3 Missense_Mutation p.H116N 0.18 tolerated(0.49) benign(0.024) TCGA-JY-A938-01 19 52273323 52273323 A - FPR2 3'UTR 0.17 TCGA-JY-A938-01 19 52569925 52569925 T A ZNF841 Missense_Mutation p.N404Y 0.26 deleterious(0) possibly_damaging(0.751) TCGA-JY-A938-01 19 53644505 53644505 A G ZNF347 Missense_Mutation p.S527P 0.10 deleterious(0.02) probably_damaging(0.986) TCGA-JY-A938-01 19 53794478 53794478 G A BIRC8 5'UTR 0.35 TCGA-JY-A938-01 19 55751414 55751414 T - PPP6R1 Frame_Shift_Del p.N477Tfs*15 0.23 TCGA-JY-A938-01 19 58258457 58258457 C T ZNF776 Nonsense_Mutation p.Q11* 0.22 TCGA-JY-A938-01 19 6832176 6832178 GAA - VAV1 In_Frame_Del p.K494del 0.18 TCGA-JY-A938-01 1 117120149 117120149 C T IGSF3 Missense_Mutation p.A1144T 0.15 deleterious(0.01) possibly_damaging(0.536) TCGA-JY-A938-01 1 119935261 119935261 A C HAO2 Missense_Mutation p.E317D 0.18 tolerated(0.29) benign(0.001) TCGA-JY-A938-01 1 12639425 12639425 T C DHRS3 Missense_Mutation p.I119V 0.21 deleterious(0.01) benign(0.21) TCGA-JY-A938-01 1 155649228 155649228 C G YY1AP1 Missense_Mutation p.A171P 0.11 tolerated(1) benign(0.001) TCGA-JY-A938-01 1 155649229 155649229 T A YY1AP1 Missense_Mutation p.Q170H 0.11 deleterious(0) benign(0.382) TCGA-JY-A938-01 1 155649230 155649230 T C YY1AP1 Missense_Mutation p.Q170R 0.11 tolerated(1) benign(0) TCGA-JY-A938-01 1 155753818 155753818 T C GON4L Silent p.V617V 0.05 TCGA-JY-A938-01 1 155753823 155753823 A G GON4L Missense_Mutation p.C616R 0.05 tolerated(1) benign(0) TCGA-JY-A938-01 1 156902288 156902288 C T LRRC71 Missense_Mutation p.A505V 0.21 tolerated(0.34) benign(0.008) TCGA-JY-A938-01 1 158654912 158654912 G T SPTA1 Missense_Mutation p.P84T 0.19 deleterious(0.05) benign(0.023) TCGA-JY-A938-01 1 161022154 161022154 C T ARHGAP30 Splice_Site p.X314_splice 0.16 TCGA-JY-A938-01 1 163042211 163042211 G T RGS4 Missense_Mutation p.G121V 0.22 deleterious(0.01) benign(0.297) TCGA-JY-A938-01 1 171293316 171293316 G A FMO4 Missense_Mutation p.E121K 0.19 tolerated(0.19) benign(0.011) TCGA-JY-A938-01 1 172425596 172425596 A C C1orf105 Missense_Mutation p.Q80H 0.16 deleterious(0.01) benign(0.266) TCGA-JY-A938-01 1 174983880 174983880 C A MRPS14 Missense_Mutation p.W104C 0.12 deleterious(0.02) possibly_damaging(0.521) TCGA-JY-A938-01 1 179989371 179989371 A G CEP350 Missense_Mutation p.K821R 0.22 probably_damaging(0.999) TCGA-JY-A938-01 1 21904778 21904778 G A ALPL 3'UTR 0.20 TCGA-JY-A938-01 1 220863885 220863885 G A C1orf115 Silent p.A47A 0.26 TCGA-JY-A938-01 1 230203084 230203084 C T GALNT2 Silent p.I19I 0.30 TCGA-JY-A938-01 1 230979141 230979141 C T C1orf198 Missense_Mutation p.D296N 0.21 tolerated(0.1) probably_damaging(0.949) TCGA-JY-A938-01 1 232615466 232615466 C T SIPA1L2 Silent p.T664T 0.21 TCGA-JY-A938-01 1 232945210 232945210 T C MAP10 3'UTR 0.26 TCGA-JY-A938-01 1 235715520 235715520 C T GNG4 Silent p.A39A 0.17 TCGA-JY-A938-01 1 240370345 240370345 C - FMN2 Frame_Shift_Del p.Q745Rfs*11 0.21 TCGA-JY-A938-01 1 240371125 240371125 G A FMN2 Missense_Mutation p.G1005R 0.25 unknown(0) TCGA-JY-A938-01 1 24172588 24172588 G A FUCA1 Silent p.S412S 0.12 TCGA-JY-A938-01 1 243290001 243290001 G T CEP170 Missense_Mutation p.A1502D 0.20 deleterious(0) probably_damaging(0.999) TCGA-JY-A938-01 1 24421447 24421447 G A MYOM3 Missense_Mutation p.S275L 0.18 tolerated(0.23) possibly_damaging(0.745) TCGA-JY-A938-01 1 247752385 247752385 G T OR2G2 Missense_Mutation p.G242W 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-JY-A938-01 1 248525012 248525012 T G OR2T4 Missense_Mutation p.F44V 0.18 deleterious(0) probably_damaging(0.95) TCGA-JY-A938-01 1 57173343 57173343 T G PRKAA2 Missense_Mutation p.F539C 0.19 deleterious(0) probably_damaging(0.993) TCGA-JY-A938-01 1 64101965 64101965 G A PGM1 Missense_Mutation p.V330I 0.23 tolerated(0.69) benign(0.351) TCGA-JY-A938-01 1 70587656 70587656 G T LRRC7 3'UTR 0.24 TCGA-JY-A938-01 1 84982041 84982041 A C SPATA1 RNA 0.15 TCGA-JY-A938-01 20 25198195 25198195 A G ENTPD6 Missense_Mutation p.T286A 0.13 deleterious(0.03) possibly_damaging(0.679) TCGA-JY-A938-01 20 35742504 35742504 G A MROH8 Silent p.A887A 0.15 TCGA-JY-A938-01 20 35807712 35807712 G A MROH8 Silent p.R84R 0.21 TCGA-JY-A938-01 20 36500361 36500361 G A CTNNBL1 Silent p.P546P 0.25 TCGA-JY-A938-01 20 44600814 44600814 A G ZNF335 5'Flank 0.20 TCGA-JY-A938-01 20 61951542 61951542 C T COL20A1 Missense_Mutation p.S1023L 0.15 deleterious(0) probably_damaging(0.975) TCGA-JY-A938-01 21 15872906 15872906 T C SAMSN1 Missense_Mutation p.S306G 0.20 tolerated(0.07) benign(0.045) TCGA-JY-A938-01 21 41423941 41423941 G A DSCAM Missense_Mutation p.S1710L 0.14 deleterious_low_confidence(0.01) benign(0.23) TCGA-JY-A938-01 21 46020630 46020630 T A KRTAP10-7 Missense_Mutation p.C37S 0.10 deleterious(0.03) benign(0.175) TCGA-JY-A938-01 22 17073521 17073521 G A CCT8L2 5'UTR 0.26 TCGA-JY-A938-01 22 22930947 22930947 G A IGLV2-33 Missense_Mutation p.V48I 0.14 tolerated_low_confidence(1) benign(0.017) TCGA-JY-A938-01 22 37578336 37578336 G A C1QTNF6 Silent p.R243R 0.26 TCGA-JY-A938-01 22 37696983 37696995 CCCAGAAGATAGA - CYTH4 Frame_Shift_Del p.Q158Gfs*2 0.17 TCGA-JY-A938-01 22 39218704 39218704 G A NPTXR Silent p.N471N 0.14 TCGA-JY-A938-01 22 42475339 42475339 C G FAM109B 3'UTR 0.19 TCGA-JY-A938-01 2 136566100 136566100 C T LCT Missense_Mutation p.E1273K 0.25 deleterious(0.03) benign(0.382) TCGA-JY-A938-01 2 1683977 1683977 C G PXDN Missense_Mutation p.E240Q 0.18 deleterious(0.03) possibly_damaging(0.831) TCGA-JY-A938-01 2 175462394 175462394 A G WIPF1 Intron 0.20 TCGA-JY-A938-01 2 185802007 185802007 A T ZNF804A Missense_Mutation p.E628D 0.13 tolerated(1) benign(0) TCGA-JY-A938-01 2 189928716 189928716 A C COL5A2 Missense_Mutation p.L587R 0.17 probably_damaging(0.914) TCGA-JY-A938-01 2 212566891 212566891 A C ERBB4 Missense_Mutation p.S430R 0.22 tolerated(0.26) benign(0.018) TCGA-JY-A938-01 2 220406468 220406468 C T CHPF Missense_Mutation p.R253H 0.24 deleterious(0) possibly_damaging(0.701) TCGA-JY-A938-01 2 233651893 233651893 C T GIGYF2 Missense_Mutation p.S211L 0.18 benign(0.358) TCGA-JY-A938-01 2 31133876 31133876 C A GALNT14 Missense_Mutation p.C522F 0.21 deleterious(0) probably_damaging(1) TCGA-JY-A938-01 2 36744519 36744519 C T CRIM1 Silent p.H680H 0.09 TCGA-JY-A938-01 2 44460161 44460161 G C PPM1B 3'Flank 0.29 TCGA-JY-A938-01 2 50758384 50758384 C T NRXN1 Silent p.V816V 0.20 TCGA-JY-A938-01 3 100962490 100962490 A C IMPG2 Silent p.T895T 0.21 TCGA-JY-A938-01 3 10861207 10861207 T C SLC6A11 Missense_Mutation p.F105S 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-JY-A938-01 3 120128473 120128473 C T FSTL1 Missense_Mutation p.R123H 0.19 tolerated(0.15) benign(0.01) TCGA-JY-A938-01 3 130368299 130368299 G A COL6A6 Missense_Mutation p.A1876T 0.25 tolerated(0.24) benign(0.031) TCGA-JY-A938-01 3 19479757 19479757 T G KCNH8 Missense_Mutation p.F427V 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-JY-A938-01 3 196304479 196304479 A C FBXO45 Missense_Mutation p.E158D 0.40 tolerated(0.11) benign(0.427) TCGA-JY-A938-01 3 25638492 25638492 T C RARB 3'UTR 0.17 TCGA-JY-A938-01 3 27436095 27436095 A C SLC4A7 Missense_Mutation p.F1002V 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-JY-A938-01 3 51101942 51101942 A G DOCK3 Missense_Mutation p.R127G 0.21 deleterious(0) probably_damaging(0.989) TCGA-JY-A938-01 3 52712580 52712580 G A PBRM1 Nonsense_Mutation p.R58* 0.25 TCGA-JY-A938-01 4 141317266 141317266 A G CLGN Silent p.N326N 0.21 TCGA-JY-A938-01 4 15937951 15937951 G A FGFBP1 Missense_Mutation p.S102L 0.19 tolerated(0.08) benign(0.129) TCGA-JY-A938-01 4 3768788 3768788 C T ADRA2C Missense_Mutation p.S152L 0.14 deleterious(0) probably_damaging(0.999) TCGA-JY-A938-01 4 5620242 5620242 A G EVC2 Missense_Mutation p.V890A 0.23 deleterious(0.01) benign(0) TCGA-JY-A938-01 4 57164502 57164502 T G KIAA1211 Missense_Mutation p.V36G 0.18 deleterious(0) probably_damaging(0.984) TCGA-JY-A938-01 4 73942757 73942757 G A ANKRD17 Missense_Mutation p.A2551V 0.17 benign(0) TCGA-JY-A938-01 4 76846906 76846906 G A NAAA Silent p.V216V 0.30 TCGA-JY-A938-01 5 140870262 140870262 T C PCDHGC5 Silent p.D485D 0.19 TCGA-JY-A938-01 5 145493695 145493695 C T LARS Missense_Mutation p.D1169N 0.32 tolerated(0.29) benign(0.006) TCGA-JY-A938-01 5 162001 162001 C A PLEKHG4B Missense_Mutation p.A508D 0.15 tolerated(0.19) benign(0.216) TCGA-JY-A938-01 5 22078696 22078696 A C CDH12 Silent p.T30T 0.27 TCGA-JY-A938-01 5 56218456 56218457 - A MIER3 3'UTR 0.22 TCGA-JY-A938-01 5 82817036 82817036 C A VCAN Missense_Mutation p.H971N 0.18 deleterious(0.05) possibly_damaging(0.719) TCGA-JY-A938-01 5 89815283 89815284 CT - LYSMD3 Frame_Shift_Del p.R91Sfs*2 0.25 TCGA-JY-A938-01 6 110301683 110301683 A G GPR6 3'UTR 0.17 TCGA-JY-A938-01 6 111208746 111208746 C G AMD1 Nonsense_Mutation p.S50* 0.14 TCGA-JY-A938-01 6 111215041 111215041 C T AMD1 3'UTR 0.20 TCGA-JY-A938-01 6 138539001 138539001 T C PBOV1 3'UTR 0.29 TCGA-JY-A938-01 6 146870763 146870763 T G RAB32 Silent p.A138A 0.24 TCGA-JY-A938-01 6 25926036 25926036 G A SLC17A2 5'UTR 0.08 TCGA-JY-A938-01 6 27114372 27114372 T C HIST1H2BK Missense_Mutation p.D69G 0.14 deleterious_low_confidence(0.01) benign(0.188) TCGA-JY-A938-01 6 29638954 29638954 C A MOG Intron 0.26 TCGA-JY-A938-01 6 32008813 32008813 C T CYP21A2 Missense_Mutation p.P464S 0.14 tolerated(0.12) probably_damaging(0.988) TCGA-JY-A938-01 6 33048784 33048784 G A HLA-DPB1 Intron 0.20 TCGA-JY-A938-01 6 36568127 36568127 C G SRSF3 Intron 0.17 TCGA-JY-A938-01 6 39157275 39157275 A T KCNK5 3'UTR 0.23 TCGA-JY-A938-01 6 41066365 41066365 G A NFYA 3'UTR 0.16 TCGA-JY-A938-01 6 69723965 69723965 A C BAI3 Missense_Mutation p.E655D 0.11 tolerated(0.12) possibly_damaging(0.571) TCGA-JY-A938-01 6 7249446 7249446 A C RREB1 3'UTR 0.13 TCGA-JY-A938-01 7 100184179 100184179 G A FBXO24 5'Flank 0.18 TCGA-JY-A938-01 7 113519496 113519496 T G PPP1R3A Missense_Mutation p.S551R 0.19 deleterious(0.05) benign(0.391) TCGA-JY-A938-01 7 114582414 114582414 C G MDFIC Missense_Mutation p.S169C 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.862) TCGA-JY-A938-01 7 127990928 127990928 G A PRRT4 Silent p.S894S 0.08 TCGA-JY-A938-01 7 134225941 134225941 C G AKR1B10 3'UTR 0.25 TCGA-JY-A938-01 7 138711138 138711138 T A ZC3HAV1L 3'UTR 0.28 TCGA-JY-A938-01 7 20824098 20824098 G A SP8 Silent p.S446S 0.31 TCGA-JY-A938-01 7 28863285 28863286 CT - CREB5 3'UTR 0.58 TCGA-JY-A938-01 7 37955709 37955709 G A SFRP4 Missense_Mutation p.T144M 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-JY-A938-01 7 47342834 47342834 C T TNS3 Silent p.A1057A 0.12 TCGA-JY-A938-01 7 94539290 94539290 C T PPP1R9A 5'UTR 0.35 TCGA-JY-A938-01 7 94991762 94991762 T A PON3 Missense_Mutation p.D273V 0.27 deleterious(0) probably_damaging(1) TCGA-JY-A938-01 7 99022859 99022859 C T ATP5J2-PTCD1 Silent p.K481K 0.17 TCGA-JY-A938-01 8 113235811 113235811 T G CSMD3 3'UTR 0.21 TCGA-JY-A938-01 8 144994276 144994276 G A PLEC Missense_Mutation p.P3375L 0.10 benign(0.161) TCGA-JY-A938-01 8 145664111 145664113 GTC - TONSL In_Frame_Del p.D496del 0.14 TCGA-JY-A938-01 8 145730717 145730717 C T GPT Missense_Mutation p.T195M 0.14 deleterious(0) possibly_damaging(0.594) TCGA-JY-A938-01 8 145772875 145772875 C - ARHGAP39 Frame_Shift_Del p.S532Tfs*5 0.13 TCGA-JY-A938-01 8 22473617 22473617 C T CCAR2 Silent p.V567V 0.23 TCGA-JY-A938-01 8 39695729 39695729 G A ADAM2 5'UTR 0.19 TCGA-JY-A938-01 8 48694817 48694817 T G PRKDC Splice_Site p.X3798_splice 0.22 TCGA-JY-A938-01 8 86573476 86573476 G A REXO1L1P 3'UTR 0.04 TCGA-JY-A938-01 8 91715677 91715677 G A RP11-68L18.2 3'Flank 0.24 TCGA-JY-A938-01 9 113168908 113168908 G T SVEP1 Missense_Mutation p.S2991Y 0.23 possibly_damaging(0.898) TCGA-JY-A938-01 9 114303978 114303978 G A ZNF483 Missense_Mutation p.D255N 0.17 tolerated(0.16) benign(0.002) TCGA-JY-A938-01 9 66553833 66553833 A C RP11-262H14.4 RNA 0.06 TCGA-JY-A938-01 9 91619359 91619359 G A S1PR3 3'UTR 0.11 TCGA-JY-A938-01 X 128888456 128888456 C T XPNPEP2 Silent p.D372D 0.40 TCGA-JY-A938-01 X 135046716 135046716 T A MMGT1 3'UTR 0.51 TCGA-JY-A938-01 X 135046734 135046734 T G MMGT1 3'UTR 0.46 TCGA-JY-A938-01 X 24228809 24228809 C T ZFX Silent p.C578C 0.38 TCGA-JY-A938-01 X 34148743 34148743 A G FAM47A Silent p.R551R 0.34 TCGA-JY-A938-01 X 73957730 73957730 C T KIAA2022 3'UTR 0.22 TCGA-JY-A939-01 10 89725564 89725564 A G PTEN 3'UTR 0.08 TCGA-JY-A939-01 11 108155199 108155199 A G ATM Missense_Mutation p.Q1331R 0.10 tolerated(0.05) benign(0.342) TCGA-JY-A939-01 11 2904856 2904856 C T CDKN1C 3'UTR 0.08 TCGA-JY-A939-01 11 85373022 85373022 A G CREBZF 3'UTR 0.06 TCGA-JY-A939-01 12 113873214 113873214 G A SDSL Missense_Mutation p.G175D 0.19 deleterious(0) probably_damaging(1) TCGA-JY-A939-01 12 117977585 117977585 C T KSR2 Silent p.P542P 0.14 TCGA-JY-A939-01 12 123187714 123187714 G C HCAR2 Missense_Mutation p.I39M 0.07 tolerated(0.07) benign(0.066) TCGA-JY-A939-01 12 4923310 4923310 T C KCNA6 3'UTR 0.07 TCGA-JY-A939-01 12 57619118 57619118 T C NXPH4 Missense_Mutation p.V172A 0.06 tolerated(0.96) benign(0) TCGA-JY-A939-01 12 57628779 57628779 A G NDUFA4L2 3'UTR 0.16 TCGA-JY-A939-01 12 91348412 91348412 C T CCER1 Silent p.S36S 0.13 TCGA-JY-A939-01 13 102227889 102227889 T C ITGBL1 Missense_Mutation p.I193T 0.06 tolerated(0.08) benign(0.392) TCGA-JY-A939-01 13 51854621 51854621 C A FAM124A Silent p.G326G 0.07 TCGA-JY-A939-01 14 104457534 104457534 C T TDRD9 Nonsense_Mutation p.R385* 0.07 TCGA-JY-A939-01 14 90738938 90738938 G A PSMC1 3'UTR 0.12 TCGA-JY-A939-01 14 91770137 91770137 T C CCDC88C Silent p.Q1181Q 0.07 TCGA-JY-A939-01 15 88472495 88472495 A C NTRK3 Missense_Mutation p.V687G 0.06 deleterious(0) probably_damaging(1) TCGA-JY-A939-01 17 12045280 12045280 C T MAP2K4 3'UTR 0.24 TCGA-JY-A939-01 17 16456419 16456419 C T ZNF287 Missense_Mutation p.R346K 0.07 tolerated(0.97) benign(0.001) TCGA-JY-A939-01 17 41607045 41607045 C T ETV4 Splice_Site p.X319_splice 0.08 TCGA-JY-A939-01 17 42857290 42857290 G A ADAM11 3'UTR 0.12 TCGA-JY-A939-01 17 46136806 46136806 C T NFE2L1 Nonsense_Mutation p.R708* 0.13 TCGA-JY-A939-01 17 59482881 59482881 C T TBX2 Missense_Mutation p.A457V 0.10 tolerated(0.16) benign(0.163) TCGA-JY-A939-01 17 70845904 70845904 G A SLC39A11 Missense_Mutation p.A164V 0.11 tolerated(0.43) benign(0.003) TCGA-JY-A939-01 17 7577498 7577498 C T TP53 Splice_Site p.X261_splice 0.10 TCGA-JY-A939-01 18 32822582 32822582 C G ZNF397 Missense_Mutation p.R50G 0.08 deleterious(0) probably_damaging(0.999) TCGA-JY-A939-01 18 44102122 44102122 C T LOXHD1 Missense_Mutation p.G565D 0.09 deleterious(0.02) probably_damaging(0.99) TCGA-JY-A939-01 19 10543166 10543166 C T PDE4A Intron 0.11 TCGA-JY-A939-01 19 16757446 16757446 C T SMIM7 3'UTR 0.30 TCGA-JY-A939-01 19 17212666 17212666 G A MYO9B Missense_Mutation p.V47I 0.25 deleterious(0) probably_damaging(0.977) TCGA-JY-A939-01 19 17865939 17865939 C T FCHO1 5'UTR 0.16 TCGA-JY-A939-01 19 17988836 17988836 C T SLC5A5 Silent p.I301I 0.14 TCGA-JY-A939-01 19 40006497 40006497 G A SELV Silent p.P215P 0.10 TCGA-JY-A939-01 19 41081607 41081607 G A SPTBN4 3'UTR 0.09 TCGA-JY-A939-01 19 8563310 8563310 G A PRAM1 Missense_Mutation p.P461L 0.17 deleterious(0) probably_damaging(1) TCGA-JY-A939-01 19 9057288 9057288 A G MUC16 Missense_Mutation p.L10053P 0.16 benign(0.092) TCGA-JY-A939-01 1 102269856 102269856 C T OLFM3 Missense_Mutation p.G439S 0.10 tolerated(0.13) probably_damaging(1) TCGA-JY-A939-01 1 12887301 12887301 G A PRAMEF11 Missense_Mutation p.P186S 0.06 tolerated(0.1) probably_damaging(0.999) TCGA-JY-A939-01 1 156006675 156006675 G A UBQLN4 3'UTR 0.10 TCGA-JY-A939-01 1 237758827 237758827 G A RYR2 Missense_Mutation p.C1489Y 0.11 benign(0.446) TCGA-JY-A939-01 1 240939498 240939498 A T RGS7 Missense_Mutation p.S477T 0.13 tolerated(0.09) benign(0.294) TCGA-JY-A939-01 1 27106648 27106648 G A ARID1A Missense_Mutation p.G2087R 0.11 probably_damaging(0.96) TCGA-JY-A939-01 1 36386117 36386117 C T AGO1 3'UTR 0.22 TCGA-JY-A939-01 1 47883213 47883213 T A FOXE3 3'UTR 0.20 TCGA-JY-A939-01 1 94018185 94018185 A T FNBP1L 3'UTR 0.17 TCGA-JY-A939-01 20 17640489 17640489 C A RRBP1 Intron 0.08 TCGA-JY-A939-01 20 25657649 25657649 C T ZNF337 Missense_Mutation p.R92Q 0.10 tolerated(0.76) benign(0.007) TCGA-JY-A939-01 20 2686660 2686660 G A EBF4 Missense_Mutation p.R108H 0.15 deleterious(0) possibly_damaging(0.89) TCGA-JY-A939-01 20 31238642 31238642 G A C20orf203 RNA 0.07 TCGA-JY-A939-01 20 57599479 57599479 G A TUBB1 Missense_Mutation p.V333M 0.08 tolerated_low_confidence(0.1) benign(0.072) TCGA-JY-A939-01 20 61340826 61340826 G A NTSR1 Silent p.A89A 0.20 TCGA-JY-A939-01 21 46000263 46000263 A C KRTAP10-5 Missense_Mutation p.C65G 0.09 deleterious(0) unknown(0) TCGA-JY-A939-01 22 29724612 29724612 G A AP1B1 3'UTR 0.19 TCGA-JY-A939-01 2 1079214 1079214 C A SNTG2 Missense_Mutation p.T28N 0.06 deleterious(0) benign(0.03) TCGA-JY-A939-01 2 183731088 183731088 C T FRZB Missense_Mutation p.A65T 0.09 deleterious(0) probably_damaging(0.998) TCGA-JY-A939-01 2 210557512 210557512 T G MAP2 Silent p.T206T 0.10 TCGA-JY-A939-01 2 220348119 220348119 G A SPEG Silent p.R1978R 0.13 TCGA-JY-A939-01 2 50149370 50149370 G A NRXN1 Silent p.G1452G 0.20 TCGA-JY-A939-01 3 130672735 130672735 C T ATP2C1 Missense_Mutation p.P235L 0.07 tolerated(0.15) benign(0.019) TCGA-JY-A939-01 3 135974781 135974781 A G PCCB Silent p.R89R 0.13 TCGA-JY-A939-01 3 183979087 183979087 T G CAMK2N2 5'UTR 0.25 TCGA-JY-A939-01 3 42771960 42771960 G A CCDC13 Missense_Mutation p.R573W 0.07 deleterious(0) probably_damaging(1) TCGA-JY-A939-01 4 55956188 55956188 T A KDR Nonsense_Mutation p.K1043* 0.08 TCGA-JY-A939-01 5 129072844 129072844 G A ADAMTS19 Missense_Mutation p.R1186Q 0.12 deleterious(0.03) probably_damaging(1) TCGA-JY-A939-01 5 140348787 140348787 G A PCDHAC2 Silent p.G812G 0.16 TCGA-JY-A939-01 5 140896575 140896575 G A DIAPH1 Missense_Mutation p.A1221V 0.09 benign(0.103) TCGA-JY-A939-01 5 36037942 36037942 C T UGT3A2 Missense_Mutation p.E418K 0.15 deleterious(0.01) benign(0.12) TCGA-JY-A939-01 5 64468749 64468749 T A ADAMTS6 Missense_Mutation p.Q999H 0.14 tolerated(0.67) benign(0.003) TCGA-JY-A939-01 5 88100421 88100421 G A MEF2C Silent p.I84I 0.10 TCGA-JY-A939-01 5 89938579 89938579 A C GPR98 Missense_Mutation p.K789N 0.10 benign(0) TCGA-JY-A939-01 6 10751375 10751375 C T TMEM14B Missense_Mutation p.P37L 0.10 tolerated(0.24) benign(0.027) TCGA-JY-A939-01 6 135263663 135263663 C T ALDH8A1 Missense_Mutation p.R109Q 0.18 deleterious(0) probably_damaging(0.996) TCGA-JY-A939-01 6 17764594 17764594 G A KIF13A Missense_Mutation p.T1722M 0.13 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-JY-A939-01 6 26376070 26376070 G A BTN3A2 Intron 0.07 TCGA-JY-A939-01 6 28200447 28200447 C A ZSCAN9 Missense_Mutation p.Q277K 0.09 tolerated(0.91) benign(0.026) TCGA-JY-A939-01 7 136556097 136556097 C A CHRM2 Intron 0.07 TCGA-JY-A939-01 7 150093717 150093717 G A ZNF775 Missense_Mutation p.G50S 0.08 tolerated(0.27) benign(0.007) TCGA-JY-A939-01 7 30492172 30492172 G A NOD1 Silent p.D287D 0.08 TCGA-JY-A939-01 7 44189585 44189585 C T GCK Missense_Mutation p.A189T 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-JY-A939-01 7 72742619 72742619 G A FKBP6 Silent p.S33S 0.12 TCGA-JY-A939-01 7 73638368 73638368 G A LAT2 Missense_Mutation p.G157S 0.09 tolerated(0.78) benign(0.095) TCGA-JY-A939-01 7 92763145 92763145 T C SAMD9L Missense_Mutation p.S714G 0.12 tolerated(0.19) benign(0.005) TCGA-JY-A939-01 8 142367889 142367889 C A GPR20 Silent p.L45L 0.11 TCGA-JY-A939-01 8 1645432 1645432 C T DLGAP2 Silent p.N892N 0.34 TCGA-JY-A939-01 8 21957265 21957265 G A FAM160B2 Missense_Mutation p.R401H 0.17 tolerated(0.19) benign(0.045) TCGA-JY-A939-01 8 26721788 26721788 C T ADRA1A Silent p.T233T 0.09 TCGA-JY-A939-01 9 107548576 107548576 T C ABCA1 Intron 0.21 TCGA-JY-A939-01 9 33548793 33548793 T A ANKRD18B Missense_Mutation p.N607K 0.17 tolerated(0.07) benign(0) TCGA-JY-A939-01 9 84532176 84532176 A C SPATA31D5P RNA 0.04 TCGA-JY-A939-01 9 8500858 8500858 T C PTPRD Missense_Mutation p.E675G 0.07 tolerated(0.2) benign(0.018) TCGA-JY-A939-01 X 114143185 114143185 A - HTR2C 3'UTR 0.09 TCGA-JY-A939-01 X 133561758 133561758 T G PHF6 3'UTR 0.12 TCGA-JY-A939-01 X 73042914 73042914 C A XIST RNA 0.16 TCGA-JY-A939-01 X 73062049 73062049 C A XIST RNA 0.19 TCGA-JY-A939-01 X 73955458 73955460 AGA - KIAA2022 3'UTR 0.15 TCGA-JY-A93C-01 10 105787180 105787180 C T SLK 3'UTR 0.30 TCGA-JY-A93C-01 10 46111990 46111990 C T ZFAND4 Missense_Mutation p.R693H 0.23 deleterious(0) probably_damaging(1) TCGA-JY-A93C-01 10 68280417 68280417 C T CTNNA3 Missense_Mutation p.V497I 0.40 tolerated(0.14) benign(0.238) TCGA-JY-A93C-01 10 82095872 82095875 AAAC - DYDC1 3'UTR 0.26 TCGA-JY-A93C-01 11 1013970 1013972 CTC - MUC6 In_Frame_Del p.E2357del 0.29 TCGA-JY-A93C-01 11 119213351 119213351 C T MFRP Missense_Mutation p.D448N 0.44 tolerated(0.06) benign(0.003) TCGA-JY-A93C-01 11 128839636 128839636 C G ARHGAP32 Missense_Mutation p.K1810N 0.51 deleterious(0) probably_damaging(0.996) TCGA-JY-A93C-01 11 128843257 128843257 C T ARHGAP32 Silent p.P1034P 0.32 TCGA-JY-A93C-01 11 128910853 128910853 G A ARHGAP32 Nonsense_Mutation p.Q325* 0.24 TCGA-JY-A93C-01 11 22396359 22396359 G A SLC17A6 Missense_Mutation p.G367E 0.06 deleterious(0) probably_damaging(0.999) TCGA-JY-A93C-01 11 26743173 26743173 A T SLC5A12 Missense_Mutation p.I30N 0.33 deleterious(0) possibly_damaging(0.855) TCGA-JY-A93C-01 11 33375774 33375774 C T HIPK3 3'UTR 0.43 TCGA-JY-A93C-01 11 49831501 49831501 G A RP11-707M1.1 RNA 0.52 TCGA-JY-A93C-01 11 5275677 5275677 C T HBG2 Missense_Mutation p.A54T 0.26 deleterious(0.02) probably_damaging(0.991) TCGA-JY-A93C-01 11 59271520 59271520 G A OR4D11 Missense_Mutation p.V158M 0.31 deleterious(0.02) possibly_damaging(0.527) TCGA-JY-A93C-01 11 66082734 66082734 G A CD248 Nonsense_Mutation p.Q589* 0.23 TCGA-JY-A93C-01 11 68773432 68773432 G A MRGPRF Missense_Mutation p.R116C 0.24 tolerated(0.17) possibly_damaging(0.718) TCGA-JY-A93C-01 11 76750755 76750755 G A B3GNT6 Missense_Mutation p.A54T 0.09 tolerated(0.16) benign(0.013) TCGA-JY-A93C-01 11 78387280 78387280 C T TENM4 Missense_Mutation p.D1805N 0.46 tolerated(0.11) possibly_damaging(0.533) TCGA-JY-A93C-01 12 119588991 119588991 T G SRRM4 Missense_Mutation p.Y416D 0.34 deleterious_low_confidence(0) probably_damaging(0.955) TCGA-JY-A93C-01 12 49459167 49459167 G A RHEBL1 Missense_Mutation p.A143V 0.48 tolerated(0.07) benign(0.106) TCGA-JY-A93C-01 12 53873359 53873359 A G PCBP2 3'UTR 0.27 TCGA-JY-A93C-01 12 64055262 64055263 - T DPY19L2 Splice_Site p.X151_splice 0.42 TCGA-JY-A93C-01 13 25670411 25670411 G A PABPC3 Silent p.A25A 0.14 TCGA-JY-A93C-01 13 74420344 74420344 G A KLF12 Missense_Mutation p.S97L 0.44 tolerated(0.41) benign(0.057) TCGA-JY-A93C-01 14 106436793 106436793 C T ADAM6 RNA 0.36 TCGA-JY-A93C-01 14 55312530 55312530 C T GCH1 Silent p.T194T 0.06 TCGA-JY-A93C-01 14 58734209 58734209 C T PSMA3 Silent p.C187C 0.37 TCGA-JY-A93C-01 14 94394682 94394682 G A FAM181A Silent p.A79A 0.32 TCGA-JY-A93C-01 15 42040878 42040878 T G MGA Silent p.P1752P 0.19 TCGA-JY-A93C-01 15 73852385 73852385 C T NPTN 3'UTR 0.71 TCGA-JY-A93C-01 16 67697103 67697103 G A ENKD1 Silent p.I334I 0.54 TCGA-JY-A93C-01 16 71482560 71482560 G A ZNF23 Silent p.A456A 0.68 TCGA-JY-A93C-01 16 87380786 87380786 G A FBXO31 Silent p.N161N 0.81 TCGA-JY-A93C-01 17 10298754 10298754 G C MYH8 Missense_Mutation p.S1553C 0.20 deleterious(0) possibly_damaging(0.759) TCGA-JY-A93C-01 17 18034622 18034622 C T MYO15A Missense_Mutation p.R1370C 0.37 unknown(0) TCGA-JY-A93C-01 17 2288155 2288155 C T MNT 3'UTR 0.40 TCGA-JY-A93C-01 17 42195004 42195004 G A HDAC5 5'UTR 0.35 TCGA-JY-A93C-01 17 45695743 45695743 G T NPEPPS Nonsense_Mutation p.E775* 0.47 TCGA-JY-A93C-01 17 45738512 45738512 G A KPNB1 Missense_Mutation p.V222I 0.36 tolerated(0.15) benign(0.066) TCGA-JY-A93C-01 17 72943349 72943349 T C OTOP3 Missense_Mutation p.F467L 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-JY-A93C-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.82 deleterious(0) probably_damaging(1) TCGA-JY-A93C-01 18 22806976 22806976 C A ZNF521 Missense_Mutation p.Q302H 0.57 tolerated(0.18) benign(0.166) TCGA-JY-A93C-01 18 48591918 48591918 C T SMAD4 Missense_Mutation p.R361C 0.63 deleterious(0) probably_damaging(1) TCGA-JY-A93C-01 19 12780801 12780808 TTACTGCC - WDR83 Frame_Shift_Del p.Y39Dfs*5 0.27 TCGA-JY-A93C-01 19 15990223 15990223 G T CYP4F2 Missense_Mutation p.R444S 0.55 deleterious(0.02) probably_damaging(0.999) TCGA-JY-A93C-01 19 17899284 17899284 C T FCHO1 3'UTR 0.15 TCGA-JY-A93C-01 19 22156812 22156812 T G ZNF208 Missense_Mutation p.K342Q 0.48 tolerated(0.1) possibly_damaging(0.495) TCGA-JY-A93C-01 19 22364151 22364151 T A ZNF676 Missense_Mutation p.H123L 0.09 deleterious(0.04) benign(0.017) TCGA-JY-A93C-01 19 35899445 35899445 C A AC002511.1 RNA 0.34 TCGA-JY-A93C-01 19 44662023 44662023 C T ZNF234 Silent p.H618H 0.39 TCGA-JY-A93C-01 19 47570102 47570102 A G ZC3H4 Silent p.S1141S 0.48 TCGA-JY-A93C-01 19 53625748 53625748 G A ZNF415 5'UTR 0.29 TCGA-JY-A93C-01 1 103342862 103342862 T G COL11A1 3'UTR 0.31 TCGA-JY-A93C-01 1 145510549 145510549 A G RBM8A 3'UTR 0.67 TCGA-JY-A93C-01 1 149783548 149783548 C T HIST2H2BF Missense_Mutation p.A111T 0.30 tolerated_low_confidence(0.06) benign(0.115) TCGA-JY-A93C-01 1 16385063 16385064 - G FAM131C Frame_Shift_Ins p.S238Qfs*43 0.16 TCGA-JY-A93C-01 1 16534232 16534232 G A ARHGEF19 Silent p.S245S 0.08 TCGA-JY-A93C-01 1 19071366 19071366 C T PAX7 Silent p.L487L 0.30 TCGA-JY-A93C-01 1 206652386 206652386 G A IKBKE Missense_Mutation p.V365I 0.44 tolerated(0.12) benign(0) TCGA-JY-A93C-01 1 21049287 21049287 G A SH2D5 Nonsense_Mutation p.Q344* 0.35 TCGA-JY-A93C-01 1 218607750 218607750 C A TGFB2 Silent p.I266I 0.05 TCGA-JY-A93C-01 1 225539422 225539422 C T DNAH14 Silent p.V2894V 0.14 TCGA-JY-A93C-01 1 231488755 231488755 C T SPRTN Missense_Mutation p.S373L 0.44 tolerated(0.22) benign(0.055) TCGA-JY-A93C-01 1 235424033 235424033 G C ARID4B Missense_Mutation p.T14S 0.33 deleterious(0) probably_damaging(0.986) TCGA-JY-A93C-01 1 27877292 27877292 C T AHDC1 Silent p.P445P 0.30 TCGA-JY-A93C-01 1 33476313 33476313 C T AK2 3'Flank 0.18 TCGA-JY-A93C-01 1 40230448 40230448 G A BMP8B Missense_Mutation p.R239W 0.10 deleterious(0) probably_damaging(0.918) TCGA-JY-A93C-01 20 17599256 17599256 G A RRBP1 Silent p.S815S 0.13 TCGA-JY-A93C-01 20 31395729 31395729 C T DNMT3B 3'UTR 0.37 TCGA-JY-A93C-01 20 55212825 55212825 G A TFAP2C Missense_Mutation p.R370Q 0.57 deleterious(0.01) benign(0.073) TCGA-JY-A93C-01 20 61445163 61445163 C T OGFR 3'UTR 0.32 TCGA-JY-A93C-01 20 62187428 62187428 G A C20orf195 Missense_Mutation p.A138T 0.31 tolerated(0.1) benign(0.313) TCGA-JY-A93C-01 21 46020564 46020564 T A KRTAP10-7 Missense_Mutation p.Y15N 0.66 deleterious(0.03) probably_damaging(0.991) TCGA-JY-A93C-01 22 23465296 23465296 G A GNAZ Missense_Mutation p.R249H 0.53 tolerated(0.37) possibly_damaging(0.521) TCGA-JY-A93C-01 22 24180922 24180922 C G DERL3 Silent p.P45P 0.16 TCGA-JY-A93C-01 22 40283492 40283492 C A ENTHD1 Missense_Mutation p.K87N 0.34 tolerated(0.07) benign(0.202) TCGA-JY-A93C-01 22 44893597 44893597 G A LDOC1L 5'UTR 0.23 TCGA-JY-A93C-01 22 45826894 45826894 C T RIBC2 Missense_Mutation p.R335C 0.50 deleterious(0.02) benign(0.084) TCGA-JY-A93C-01 2 110372640 110372640 C T SOWAHC Missense_Mutation p.L192F 0.78 tolerated(0.72) benign(0.001) TCGA-JY-A93C-01 2 11780510 11780510 G A GREB1 Missense_Mutation p.R1927H 0.28 deleterious(0) probably_damaging(0.939) TCGA-JY-A93C-01 2 145145723 145145723 T C ZEB2 3'UTR 0.50 TCGA-JY-A93C-01 2 14789551 14789551 C A AC011897.1 3'UTR 0.39 TCGA-JY-A93C-01 2 154334954 154334954 C T RPRM Silent p.A42A 0.31 TCGA-JY-A93C-01 2 165944739 165944739 T C SCN3A 3'UTR 0.25 TCGA-JY-A93C-01 2 190920801 190920801 G C MSTN 3'UTR 0.19 TCGA-JY-A93C-01 2 231775309 231775309 G A GPR55 Silent p.I123I 0.45 TCGA-JY-A93C-01 2 234438130 234438130 T C USP40 Silent p.P511P 0.36 TCGA-JY-A93C-01 2 242590455 242590455 C G ATG4B Missense_Mutation p.A14G 0.52 tolerated(0.51) benign(0.001) TCGA-JY-A93C-01 2 69732760 69732760 G T AAK1 Missense_Mutation p.P737Q 0.20 deleterious(0) possibly_damaging(0.904) TCGA-JY-A93C-01 2 73868634 73868634 C T NAT8 Missense_Mutation p.R41Q 0.48 tolerated(0.39) benign(0.004) TCGA-JY-A93C-01 2 85656732 85656732 C T Y_RNA 5'Flank 0.13 TCGA-JY-A93C-01 3 122631054 122631054 G A SEMA5B Missense_Mutation p.T1008M 0.31 deleterious(0.05) probably_damaging(0.99) TCGA-JY-A93C-01 3 1445212 1445212 A - CNTN6 3'UTR 0.46 TCGA-JY-A93C-01 3 14549126 14549126 G A GRIP2 RNA 0.38 TCGA-JY-A93C-01 3 173322858 173322858 A C NLGN1 Missense_Mutation p.N157T 0.34 deleterious(0) probably_damaging(0.98) TCGA-JY-A93C-01 3 179305771 179305771 G A ACTL6A Silent p.K421K 0.45 TCGA-JY-A93C-01 3 183995996 183995996 C T ECE2 Silent p.N333N 0.39 TCGA-JY-A93C-01 3 187416574 187416574 G A RTP2 Silent p.Y130Y 0.29 TCGA-JY-A93C-01 3 3080636 3080636 G A CNTN4 Silent p.A704A 0.13 TCGA-JY-A93C-01 3 32567540 32567540 T C DYNC1LI1 3'UTR 0.28 TCGA-JY-A93C-01 3 44905743 44905743 C T TMEM42 Silent p.L83L 0.33 TCGA-JY-A93C-01 3 49308821 49308821 T C C3orf62 Missense_Mutation p.E199G 0.56 deleterious(0) possibly_damaging(0.743) TCGA-JY-A93C-01 3 49881278 49881278 G A TRAIP Nonsense_Mutation p.Q122* 0.42 TCGA-JY-A93C-01 3 62355377 62355377 T G FEZF2 3'UTR 0.34 TCGA-JY-A93C-01 3 67426275 67426275 C T SUCLG2 Intron 0.33 TCGA-JY-A93C-01 3 98240278 98240278 C T CLDND1 Silent p.L20L 0.28 TCGA-JY-A93C-01 4 103228745 103228745 G A SLC39A8 Silent p.L134L 0.48 TCGA-JY-A93C-01 4 11400771 11400771 C T HS3ST1 Missense_Mutation p.E287K 0.12 tolerated(0.72) benign(0.009) TCGA-JY-A93C-01 4 15818189 15818189 C A CD38 Missense_Mutation p.H97N 0.30 tolerated(1) benign(0) TCGA-JY-A93C-01 4 17661603 17661603 T G FAM184B Missense_Mutation p.Q601P 0.13 deleterious(0.03) probably_damaging(0.983) TCGA-JY-A93C-01 4 184019123 184019123 C T WWC2 5'Flank 0.65 TCGA-JY-A93C-01 4 3240679 3240679 G - HTT Frame_Shift_Del p.S3064Pfs*25 0.40 TCGA-JY-A93C-01 5 101834432 101834432 C A SLCO6A1 Silent p.P39P 0.29 TCGA-JY-A93C-01 5 118969766 118969766 C T FAM170A Missense_Mutation p.S108L 0.27 tolerated(0.13) probably_damaging(0.928) TCGA-JY-A93C-01 5 140699008 140699012 GAGAA - TAF7 Frame_Shift_Del p.S201Rfs*10 0.53 TCGA-JY-A93C-01 5 141244972 141244972 G A PCDH1 Silent p.D308D 0.28 TCGA-JY-A93C-01 5 141309193 141309193 G A KIAA0141 Silent p.R153R 0.08 TCGA-JY-A93C-01 5 145890423 145890423 C T TCERG1 3'UTR 0.21 TCGA-JY-A93C-01 5 67591135 67591137 GAG - PIK3R1 In_Frame_Del p.R577del 0.33 TCGA-JY-A93C-01 6 109468002 109468002 C T CEP57L1 Missense_Mutation p.R68C 0.20 tolerated(0.09) probably_damaging(0.952) TCGA-JY-A93C-01 6 117591852 117591852 G A VGLL2 Missense_Mutation p.A180T 0.33 tolerated(0.29) benign(0.019) TCGA-JY-A93C-01 6 117859866 117859866 C T DCBLD1 Nonsense_Mutation p.Q282* 0.39 TCGA-JY-A93C-01 6 143095613 143095613 C T HIVEP2 Missense_Mutation p.R88H 0.19 tolerated(0.56) benign(0.006) TCGA-JY-A93C-01 6 147042619 147042619 G T ADGB Missense_Mutation p.L691F 0.41 tolerated(0.12) possibly_damaging(0.831) TCGA-JY-A93C-01 6 152712457 152712457 A C SYNE1 Silent p.T2653T 0.10 TCGA-JY-A93C-01 6 160664750 160664750 A T SLC22A2 Missense_Mutation p.L378Q 0.62 deleterious(0) probably_damaging(0.997) TCGA-JY-A93C-01 6 168999587 168999587 G A SMOC2 Missense_Mutation p.G254S 0.18 deleterious(0.01) possibly_damaging(0.701) TCGA-JY-A93C-01 6 50696969 50696969 T A TFAP2D Nonsense_Mutation p.L276* 0.77 TCGA-JY-A93C-01 6 73110998 73110999 - A RIMS1 3'Flank 0.36 TCGA-JY-A93C-01 6 8079689 8079689 C T EEF1E1 3'UTR 0.73 TCGA-JY-A93C-01 7 100084522 100084522 C T NYAP1 Silent p.I49I 0.13 TCGA-JY-A93C-01 7 126173519 126173519 C T GRM8 Missense_Mutation p.M639I 0.12 tolerated(0.25) possibly_damaging(0.505) TCGA-JY-A93C-01 7 4218194 4218194 G A SDK1 Missense_Mutation p.V1692M 0.30 deleterious(0.05) possibly_damaging(0.814) TCGA-JY-A93C-01 7 55223573 55223573 G A EGFR Missense_Mutation p.D314N 0.42 tolerated(1) benign(0.074) TCGA-JY-A93C-01 8 105264718 105264718 C T RIMS2 3'Flank 0.39 TCGA-JY-A93C-01 8 122626290 122626290 T C HAS2 3'UTR 0.31 TCGA-JY-A93C-01 8 12886428 12886428 C T KIAA1456 3'UTR 0.74 TCGA-JY-A93C-01 8 130762320 130762320 T G GSDMC Missense_Mutation p.I377L 0.19 deleterious(0.02) possibly_damaging(0.831) TCGA-JY-A93C-01 8 145773258 145773258 C T ARHGAP39 Silent p.A404A 0.31 TCGA-JY-A93C-01 8 65493930 65493930 G A BHLHE22 Missense_Mutation p.V195I 0.36 deleterious_low_confidence(0.04) benign(0.001) TCGA-JY-A93C-01 8 77620259 77620259 C A ZFHX4 Missense_Mutation p.H1023Q 0.67 possibly_damaging(0.555) TCGA-JY-A93C-01 8 86044118 86044118 C T LRRCC1 Silent p.D630D 0.08 TCGA-JY-A93C-01 8 87235208 87235208 G A SLC7A13 Silent p.L270L 0.21 TCGA-JY-A93C-01 9 135946427 135946427 C T CEL Missense_Mutation p.T516M 0.16 tolerated(0.12) benign(0.004) TCGA-JY-A93C-01 9 140120094 140120094 C A C9orf169 Silent p.V7V 0.35 TCGA-JY-A93C-01 9 33311168 33311168 C T NFX1 Nonsense_Mutation p.R481* 0.49 TCGA-JY-A93C-01 9 70177742 70177742 C T FOXD4L5 Missense_Mutation p.S81N 0.06 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-JY-A93C-01 9 86153075 86153075 G A FRMD3 Silent p.S24S 0.40 TCGA-JY-A93C-01 9 89561664 89561664 C A GAS1 Nonsense_Mutation p.E11* 0.24 TCGA-JY-A93C-01 X 117700054 117700054 G A DOCK11 Missense_Mutation p.M260I 0.76 deleterious(0) probably_damaging(0.997) TCGA-JY-A93C-01 X 125298846 125298846 C A DCAF12L2 Silent p.R354R 0.81 TCGA-JY-A93C-01 X 1327703 1327703 A G CRLF2 Missense_Mutation p.Y60H 0.12 tolerated(0.06) possibly_damaging(0.785) TCGA-JY-A93C-01 X 147891443 147891443 G A AFF2 Missense_Mutation p.R362Q 0.83 deleterious(0) probably_damaging(0.994) TCGA-JY-A93C-01 X 154113573 154113573 C T H2AFB1 Silent p.I83I 0.43 TCGA-JY-A93C-01 X 2408326 2408326 G A ZBED1 Silent p.D145D 0.64 TCGA-JY-A93C-01 X 48760684 48760684 G T SLC35A2 3'UTR 0.17 TCGA-JY-A93C-01 X 65242587 65242587 G T VSIG4 Intron 0.71 TCGA-JY-A93C-01 X 92966192 92966192 A T FAM133A 3'UTR 0.77 TCGA-JY-A93D-01 10 28971125 28971125 G A BAMBI Missense_Mutation p.R193H 0.10 tolerated(0.07) probably_damaging(0.987) TCGA-JY-A93D-01 10 4702296 4702296 G A LINC00705 RNA 0.14 TCGA-JY-A93D-01 10 55582052 55582052 G A PCDH15 Missense_Mutation p.P1814S 0.33 tolerated_low_confidence(0.81) unknown(0) TCGA-JY-A93D-01 11 1016412 1016414 GAG - MUC6 In_Frame_Del p.S2130del 0.26 TCGA-JY-A93D-01 11 1103846 1103846 C T MUC2 Silent p.T2715T 0.07 TCGA-JY-A93D-01 11 111749781 111749781 G A FDXACB1 Nonsense_Mutation p.Q26* 0.22 TCGA-JY-A93D-01 11 123676267 123676267 G T OR6M1 Nonsense_Mutation p.S264* 0.18 TCGA-JY-A93D-01 11 49974054 49974054 T A OR4C13 Missense_Mutation p.V27D 0.11 deleterious_low_confidence(0) benign(0.365) TCGA-JY-A93D-01 11 55433080 55433080 T C OR4C6 Silent p.A146A 0.08 TCGA-JY-A93D-01 11 56949646 56949646 T C LRRC55 Silent p.D93D 0.29 TCGA-JY-A93D-01 11 57102687 57102687 G C SSRP1 5'UTR 0.14 TCGA-JY-A93D-01 11 6647467 6647467 C T DCHS1 Missense_Mutation p.R2170H 0.20 deleterious(0) probably_damaging(0.978) TCGA-JY-A93D-01 11 67817454 67817454 A G TCIRG1 Missense_Mutation p.D680G 0.25 tolerated(0.35) benign(0.004) TCGA-JY-A93D-01 11 69063836 69063836 C A MYEOV Missense_Mutation p.L307I 0.14 unknown(0) TCGA-JY-A93D-01 12 113285565 113285565 C A RPH3A Missense_Mutation p.L50M 0.24 deleterious(0) probably_damaging(0.998) TCGA-JY-A93D-01 12 21627896 21627896 C T RECQL Missense_Mutation p.A412T 0.61 deleterious(0) probably_damaging(0.99) TCGA-JY-A93D-01 12 39046305 39046305 T A CPNE8 3'UTR 0.29 TCGA-JY-A93D-01 12 40716130 40716130 T A LRRK2 Missense_Mutation p.L1776H 0.09 deleterious(0) possibly_damaging(0.905) TCGA-JY-A93D-01 12 49445673 49445673 C T KMT2D Missense_Mutation p.R598H 0.10 unknown(0) TCGA-JY-A93D-01 12 56091595 56091595 G A ITGA7 Silent p.G435G 0.19 TCGA-JY-A93D-01 12 6128535 6128535 G A VWF Missense_Mutation p.A1350V 0.18 tolerated(0.22) benign(0) TCGA-JY-A93D-01 12 8543176 8543176 G T LINC00937 RNA 0.62 TCGA-JY-A93D-01 12 97038026 97038026 A G C12orf55 Missense_Mutation p.S1463G 0.24 tolerated(0.11) benign(0.133) TCGA-JY-A93D-01 13 29933537 29933537 C T MTUS2 Missense_Mutation p.A1025V 0.22 tolerated(0.78) benign(0) TCGA-JY-A93D-01 13 36245406 36245406 A C NBEA 3'UTR 0.23 TCGA-JY-A93D-01 13 36246296 36246296 A T NBEA 3'UTR 0.26 TCGA-JY-A93D-01 14 52899225 52899225 G A TXNDC16 Missense_Mutation p.R759C 0.22 tolerated(0.16) benign(0.027) TCGA-JY-A93D-01 14 59113493 59113493 G A DACT1 Missense_Mutation p.A718T 0.11 deleterious(0) possibly_damaging(0.512) TCGA-JY-A93D-01 14 86089572 86089572 T C FLRT2 Missense_Mutation p.Y572H 0.31 tolerated(0.27) benign(0.046) TCGA-JY-A93D-01 15 34673778 34673778 G C GOLGA8A Missense_Mutation p.P549R 0.26 deleterious(0.02) possibly_damaging(0.726) TCGA-JY-A93D-01 15 41120652 41120652 C A PPP1R14D Missense_Mutation p.R63L 0.19 tolerated_low_confidence(0.13) possibly_damaging(0.569) TCGA-JY-A93D-01 15 50866881 50866881 C G TRPM7 Silent p.T1685T 0.13 TCGA-JY-A93D-01 16 29876133 29876133 T G CDIPT 5'Flank 0.19 TCGA-JY-A93D-01 16 3168964 3168964 G A ZNF205 Silent p.S181S 0.15 TCGA-JY-A93D-01 16 46513115 46513115 T C ANKRD26P1 RNA 0.09 TCGA-JY-A93D-01 16 70551549 70551549 G A COG4 Missense_Mutation p.R117C 0.23 deleterious(0) probably_damaging(1) TCGA-JY-A93D-01 17 20799142 20799142 G A CCDC144NL Silent p.H64H 0.31 TCGA-JY-A93D-01 17 36873150 36873150 G A MLLT6 Missense_Mutation p.G523S 0.11 tolerated(1) unknown(0) TCGA-JY-A93D-01 17 39316350 39316350 A G KRTAP4-4 3'UTR 0.10 TCGA-JY-A93D-01 17 42432356 42432356 G A FAM171A2 Missense_Mutation p.A409V 0.09 tolerated(0.31) benign(0.017) TCGA-JY-A93D-01 17 56387907 56387907 C A BZRAP1 Missense_Mutation p.G1222V 0.26 deleterious(0.04) benign(0.382) TCGA-JY-A93D-01 17 60782722 60782722 C T MARCH10 Intron 0.33 TCGA-JY-A93D-01 17 73552199 73552199 G A LLGL2 Missense_Mutation p.G50S 0.07 deleterious(0.03) possibly_damaging(0.907) TCGA-JY-A93D-01 17 7386176 7386176 G C SLC35G6 Silent p.V291V 0.45 TCGA-JY-A93D-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.22 deleterious(0) probably_damaging(1) TCGA-JY-A93D-01 17 8783785 8783785 A G PIK3R5 3'UTR 0.21 TCGA-JY-A93D-01 18 53017614 53017614 T C TCF4 Silent p.K277K 0.32 TCGA-JY-A93D-01 18 55153458 55153458 G A ONECUT2 3'UTR 0.15 TCGA-JY-A93D-01 19 15302299 15302299 G A NOTCH3 Silent p.F324F 0.20 TCGA-JY-A93D-01 19 17435735 17435735 C T ANO8 Missense_Mutation p.R1041H 0.15 deleterious_low_confidence(0) unknown(0) TCGA-JY-A93D-01 19 20808302 20808302 T G ZNF626 Missense_Mutation p.K127N 0.15 deleterious(0.01) benign(0.343) TCGA-JY-A93D-01 19 35625430 35625430 G A LGI4 Missense_Mutation p.P52L 0.04 deleterious(0.05) benign(0.223) TCGA-JY-A93D-01 19 35801001 35801001 G A MAG Missense_Mutation p.V486I 0.21 tolerated(0.4) benign(0.033) TCGA-JY-A93D-01 19 37441138 37441138 T G ZNF568 Silent p.P361P 0.19 TCGA-JY-A93D-01 19 45316510 45316510 G A BCAM Missense_Mutation p.A170T 0.22 deleterious(0.01) possibly_damaging(0.887) TCGA-JY-A93D-01 19 50944200 50944200 G A MYBPC2 Silent p.P212P 0.09 TCGA-JY-A93D-01 19 51391637 51391637 C T KLKP1 RNA 0.24 TCGA-JY-A93D-01 19 52115505 52115505 C T SIGLEC5 Silent p.S545S 0.22 TCGA-JY-A93D-01 19 57089485 57089485 A T ZNF470 Missense_Mutation p.K563M 0.16 deleterious(0) probably_damaging(0.998) TCGA-JY-A93D-01 19 57640428 57640428 A C USP29 Missense_Mutation p.I129L 0.30 tolerated(0.1) benign(0.136) TCGA-JY-A93D-01 19 58601387 58601387 C T ZSCAN18 Missense_Mutation p.R139H 0.21 tolerated(0.33) benign(0.021) TCGA-JY-A93D-01 1 120277963 120277963 G A PHGDH Missense_Mutation p.R230H 0.23 tolerated(0.05) benign(0.029) TCGA-JY-A93D-01 1 12907979 12907979 A C HNRNPCL1 Missense_Mutation p.V55G 0.04 deleterious(0) probably_damaging(0.93) TCGA-JY-A93D-01 1 147095863 147095863 G A BCL9 Silent p.P1128P 0.16 TCGA-JY-A93D-01 1 158324338 158324338 T G CD1E Missense_Mutation p.L77R 0.22 deleterious(0.02) benign(0.424) TCGA-JY-A93D-01 1 158517076 158517076 T A OR6Y1 Missense_Mutation p.N274Y 0.22 deleterious(0) possibly_damaging(0.814) TCGA-JY-A93D-01 1 158549213 158549213 T G OR10X1 Missense_Mutation p.Q159H 0.17 tolerated(0.3) benign(0.012) TCGA-JY-A93D-01 1 160385602 160385602 G A VANGL2 5'UTR 0.16 TCGA-JY-A93D-01 1 196397362 196397362 T C KCNT2 Missense_Mutation p.K286R 0.29 tolerated(0.09) probably_damaging(0.991) TCGA-JY-A93D-01 1 197021845 197021845 A C F13B Missense_Mutation p.L492V 0.12 deleterious(0.02) benign(0.291) TCGA-JY-A93D-01 1 197396706 197396706 T G CRB1 Missense_Mutation p.L751V 0.15 tolerated(0.07) possibly_damaging(0.771) TCGA-JY-A93D-01 1 214170645 214170645 A C PROX1 Missense_Mutation p.K256T 0.28 deleterious(0) possibly_damaging(0.711) TCGA-JY-A93D-01 1 248403118 248403118 A C OR2M4 Missense_Mutation p.E296D 0.20 tolerated(0.56) benign(0.02) TCGA-JY-A93D-01 1 248551763 248551763 T G OR2T6 Nonsense_Mutation p.L285* 0.30 TCGA-JY-A93D-01 1 3425796 3425796 C T MEGF6 Silent p.P457P 0.24 TCGA-JY-A93D-01 1 43778258 43778258 T G TIE1 Missense_Mutation p.L638R 0.17 tolerated(0.37) benign(0.145) TCGA-JY-A93D-01 1 89453970 89453970 A G CCBL2 Missense_Mutation p.S22P 0.33 tolerated(0.21) benign(0) TCGA-JY-A93D-01 1 94018116 94018116 T G FNBP1L 3'UTR 0.27 TCGA-JY-A93D-01 20 42908437 42908437 G A GDAP1L1 3'UTR 0.14 TCGA-JY-A93D-01 20 43933303 43933303 C T MATN4 Missense_Mutation p.A70T 0.17 possibly_damaging(0.627) TCGA-JY-A93D-01 20 55012570 55012570 A G CASS4 Silent p.Q129Q 0.14 TCGA-JY-A93D-01 21 31869189 31869189 A G KRTAP19-4 Silent p.N80N 0.13 TCGA-JY-A93D-01 22 20640918 20640918 G A AC011718.2 Intron 0.04 TCGA-JY-A93D-01 22 38565366 38565366 C T PLA2G6 Missense_Mutation p.R23Q 0.28 deleterious(0.04) probably_damaging(0.966) TCGA-JY-A93D-01 2 116601640 116601640 A C DPP10 3'Flank 0.11 TCGA-JY-A93D-01 2 141110546 141110546 T G LRP1B Silent p.R3876R 0.21 TCGA-JY-A93D-01 2 1459924 1459924 T G TPO Missense_Mutation p.L230R 0.50 deleterious(0) probably_damaging(0.995) TCGA-JY-A93D-01 2 166245699 166245699 T A SCN2A Missense_Mutation p.F1795I 0.22 deleterious(0) probably_damaging(0.997) TCGA-JY-A93D-01 2 1668815 1668815 G T PXDN Missense_Mutation p.D441E 0.29 deleterious(0.01) possibly_damaging(0.7) TCGA-JY-A93D-01 2 178326699 178326699 C T AGPS Missense_Mutation p.R317C 0.15 deleterious(0) probably_damaging(0.949) TCGA-JY-A93D-01 2 179437626 179437626 G T TTN Silent p.A24411A 0.17 TCGA-JY-A93D-01 2 1926321 1926321 T C MYT1L Missense_Mutation p.E407G 0.23 tolerated(0.1) benign(0.167) TCGA-JY-A93D-01 2 196729724 196729724 G A DNAH7 Missense_Mutation p.R2219C 0.17 deleterious(0) probably_damaging(1) TCGA-JY-A93D-01 2 234651859 234651859 T A UGT1A10 Intron 0.06 TCGA-JY-A93D-01 2 235950407 235950407 C T SH3BP4 Missense_Mutation p.L332F 0.26 deleterious(0) probably_damaging(0.994) TCGA-JY-A93D-01 2 242207918 242207918 T C HDLBP 5'UTR 0.11 TCGA-JY-A93D-01 2 32640137 32640137 G A BIRC6 Missense_Mutation p.G593D 0.22 benign(0) TCGA-JY-A93D-01 2 49190059 49190059 C T FSHR Missense_Mutation p.R634H 0.24 deleterious(0) possibly_damaging(0.881) TCGA-JY-A93D-01 3 119624622 119624622 G A GSK3B Nonsense_Mutation p.Q265* 0.08 TCGA-JY-A93D-01 3 134348480 134348480 T G KY Missense_Mutation p.K107T 0.18 deleterious_low_confidence(0.01) benign(0.021) TCGA-JY-A93D-01 3 89528842 89528842 G C EPHA3 3'UTR 0.15 TCGA-JY-A93D-01 4 140291507 140291507 T G NAA15 Missense_Mutation p.D632E 0.14 tolerated(0.59) benign(0.019) TCGA-JY-A93D-01 4 155158150 155158150 T G DCHS2 Missense_Mutation p.K2097Q 0.17 tolerated(0.45) benign(0.008) TCGA-JY-A93D-01 4 155411001 155411001 C T DCHS2 Missense_Mutation p.D503N 0.13 deleterious(0) probably_damaging(0.958) TCGA-JY-A93D-01 4 155507462 155507462 C T FGA Nonsense_Mutation p.W373* 0.13 TCGA-JY-A93D-01 4 177604771 177604771 T G VEGFC 3'UTR 0.13 TCGA-JY-A93D-01 4 96140155 96140155 T G UNC5C Missense_Mutation p.N537T 0.07 deleterious(0.02) benign(0.034) TCGA-JY-A93D-01 5 10433837 10433838 - T MARCH6 3'UTR 0.22 TCGA-JY-A93D-01 5 13717530 13717530 T G DNAH5 Missense_Mutation p.K4200T 0.24 possibly_damaging(0.728) TCGA-JY-A93D-01 5 140552670 140552670 T G PCDHB7 Missense_Mutation p.L85R 0.14 deleterious_low_confidence(0) benign(0.03) TCGA-JY-A93D-01 5 140558997 140558997 T C PCDHB8 Missense_Mutation p.V461A 0.04 deleterious_low_confidence(0) possibly_damaging(0.652) TCGA-JY-A93D-01 5 176306892 176306892 G A UNC5A 3'UTR 0.16 TCGA-JY-A93D-01 5 180424394 180424394 C A BTNL3 Silent p.I193I 0.10 TCGA-JY-A93D-01 5 1878122 1878122 G A IRX4 Silent p.L507L 0.19 TCGA-JY-A93D-01 5 32074390 32074390 A G PDZD2 Missense_Mutation p.T1060A 0.29 tolerated(0.54) benign(0.014) TCGA-JY-A93D-01 5 35957435 35957435 C T UGT3A1 Silent p.Q310Q 0.26 TCGA-JY-A93D-01 5 9337840 9337840 A G SEMA5A Missense_Mutation p.L70P 0.11 deleterious(0) probably_damaging(0.994) TCGA-JY-A93D-01 6 107955614 107955614 C T SOBP Silent p.T522T 0.13 TCGA-JY-A93D-01 6 110301840 110301840 G A GPR6 3'UTR 0.09 TCGA-JY-A93D-01 6 135286187 135286187 T C HBS1L 3'UTR 0.33 TCGA-JY-A93D-01 6 150158531 150158531 C T LRP11 Missense_Mutation p.A328T 0.26 deleterious(0.05) possibly_damaging(0.483) TCGA-JY-A93D-01 6 53363689 53363689 T G GCLC Silent p.I593I 0.07 TCGA-JY-A93D-01 6 55990409 55990409 C A COL21A1 Missense_Mutation p.G536C 0.09 deleterious(0) probably_damaging(1) TCGA-JY-A93D-01 6 75866113 75866113 T G COL12A1 Missense_Mutation p.K1037T 0.08 benign(0.057) TCGA-JY-A93D-01 6 87964759 87964759 A G ZNF292 Missense_Mutation p.D471G 0.27 deleterious(0) probably_damaging(0.999) TCGA-JY-A93D-01 6 99286252 99286252 C G POU3F2 3'UTR 0.28 TCGA-JY-A93D-01 7 106823018 106823018 C T HBP1 Missense_Mutation p.P124S 0.10 deleterious(0.02) benign(0.343) TCGA-JY-A93D-01 7 119915139 119915139 C T KCND2 Silent p.D151D 0.67 TCGA-JY-A93D-01 7 142568320 142568320 T A EPHB6 Missense_Mutation p.F947I 0.15 tolerated(0.08) possibly_damaging(0.899) TCGA-JY-A93D-01 7 142965910 142965910 G A GSTK1 Missense_Mutation p.A277T 0.24 tolerated(0.44) probably_damaging(0.995) TCGA-JY-A93D-01 7 154684563 154684563 G A DPP6 3'UTR 0.11 TCGA-JY-A93D-01 7 48619925 48619925 T G ABCA13 Nonsense_Mutation p.Y4820* 0.18 TCGA-JY-A93D-01 7 82545982 82545982 C T PCLO Missense_Mutation p.E3774K 0.11 unknown(0) TCGA-JY-A93D-01 7 88964744 88964744 A C ZNF804B Missense_Mutation p.Q816H 0.38 tolerated(0.23) probably_damaging(0.935) TCGA-JY-A93D-01 7 90837458 90837458 A - CDK14 3'UTR 0.17 TCGA-JY-A93D-01 8 100286533 100286534 TC A VPS13B Frame_Shift_Del p.S875Kfs*2 0.15 TCGA-JY-A93D-01 8 11280453 11280453 G A FAM167A 3'UTR 0.03 TCGA-JY-A93D-01 8 118169955 118169955 C A SLC30A8 Silent p.I148I 0.19 TCGA-JY-A93D-01 8 2000309 2000309 C G MYOM2 Silent p.S47S 0.13 TCGA-JY-A93D-01 8 20110624 20110624 C T LZTS1 Missense_Mutation p.R273K 0.05 tolerated(0.11) benign(0.274) TCGA-JY-A93D-01 8 49832485 49832485 A C SNAI2 Missense_Mutation p.L199V 0.33 deleterious(0) probably_damaging(0.999) TCGA-JY-A93D-01 9 124535156 124535156 C T DAB2IP Silent p.A755A 0.41 TCGA-JY-A93D-01 9 139906125 139906125 G A ABCA2 Missense_Mutation p.T1871I 0.34 deleterious(0.02) probably_damaging(0.936) TCGA-JY-A93D-01 9 16412667 16412667 T C BNC2 3'UTR 0.20 TCGA-JY-A93D-01 9 21971025 21971026 GC - CDKN2A Frame_Shift_Del p.G111Afs*8 0.36 TCGA-JY-A93D-01 9 80921272 80921272 C G PSAT1 Missense_Mutation p.S147C 0.32 deleterious(0) probably_damaging(0.999) TCGA-JY-A93D-01 9 85611980 85611982 CAT - RASEF In_Frame_Del p.D622del 0.09 TCGA-JY-A93D-01 X 110494492 110494492 T G CAPN6 Missense_Mutation p.T306P 0.18 deleterious(0.01) probably_damaging(0.961) TCGA-JY-A93D-01 X 110952267 110952267 T A ALG13 Silent p.T275T 0.12 TCGA-JY-A93D-01 X 138667261 138667261 A G MCF2 Silent p.T979T 0.33 TCGA-JY-A93D-01 X 31224764 31224764 C T DMD Missense_Mutation p.R3195H 0.24 benign(0.391) TCGA-JY-A93D-01 X 55515146 55515146 C T USP51 Missense_Mutation p.S76N 0.29 tolerated_low_confidence(0.56) unknown(0) TCGA-JY-A93D-01 X 65822517 65822517 A C EDA2R Missense_Mutation p.F159V 0.38 tolerated(0.46) possibly_damaging(0.481) TCGA-JY-A93E-01 10 103919022 103919022 G A NOLC1 Missense_Mutation p.S227N 0.31 deleterious_low_confidence(0.04) benign(0.213) TCGA-JY-A93E-01 10 118764692 118764692 C A KIAA1598 5'UTR 0.15 TCGA-JY-A93E-01 10 123245031 123245031 C T FGFR2 Silent p.V692V 0.21 TCGA-JY-A93E-01 10 126715420 126715420 T A CTBP2 Silent p.A303A 0.20 TCGA-JY-A93E-01 10 129906122 129906122 C T MKI67 Missense_Mutation p.G1328S 0.19 tolerated(0.1) benign(0.043) TCGA-JY-A93E-01 10 134999947 134999947 G A KNDC1 Silent p.P365P 0.20 TCGA-JY-A93E-01 10 16962050 16962050 C T CUBN Missense_Mutation p.A2245T 0.10 tolerated(0.31) benign(0.272) TCGA-JY-A93E-01 10 17450200 17450200 C T ST8SIA6 Intron 0.13 TCGA-JY-A93E-01 10 18903421 18903421 G T NSUN6 Silent p.R181R 0.20 TCGA-JY-A93E-01 10 6063544 6063544 G A IL2RA Silent p.H160H 0.24 TCGA-JY-A93E-01 10 6066312 6066312 G C IL2RA Missense_Mutation p.R88G 0.16 tolerated(0.29) benign(0.007) TCGA-JY-A93E-01 10 75143084 75143084 C A ANXA7 Missense_Mutation p.R278L 0.19 tolerated(0.28) possibly_damaging(0.454) TCGA-JY-A93E-01 10 7786916 7786916 C T ITIH2 Silent p.H857H 0.42 TCGA-JY-A93E-01 10 84738876 84738876 G T NRG3 Missense_Mutation p.G528V 0.20 deleterious(0) probably_damaging(0.982) TCGA-JY-A93E-01 10 858947 858947 C T LARP4B Silent p.P712P 0.17 TCGA-JY-A93E-01 10 92501768 92501768 G C HTR7 3'UTR 0.12 TCGA-JY-A93E-01 10 94821065 94821065 G A CYP26C1 Silent p.A15A 0.19 TCGA-JY-A93E-01 11 100999555 100999555 C T PGR Missense_Mutation p.V83M 0.06 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-JY-A93E-01 11 104762130 104762130 T A CASP12 Missense_Mutation p.E145V 0.19 deleterious(0.01) possibly_damaging(0.595) TCGA-JY-A93E-01 11 104762131 104762131 C A CASP12 Nonsense_Mutation p.E145* 0.19 TCGA-JY-A93E-01 11 107299551 107299551 T C CWF19L2 Silent p.L469L 0.17 TCGA-JY-A93E-01 11 118767247 118767247 G A BCL9L 3'UTR 0.09 TCGA-JY-A93E-01 11 119207908 119207909 TG - RNF26 3'UTR 0.14 TCGA-JY-A93E-01 11 126110726 126110726 A C FAM118B Missense_Mutation p.E42D 0.21 tolerated(0.26) benign(0.024) TCGA-JY-A93E-01 11 128838701 128838701 G A ARHGAP32 3'UTR 0.29 TCGA-JY-A93E-01 11 46890564 46890564 G A LRP4 Silent p.I1604I 0.25 TCGA-JY-A93E-01 11 62010902 62010902 C T SCGB1D2 Missense_Mutation p.T66M 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-JY-A93E-01 11 62558224 62558224 C T TMEM223 Silent p.R160R 0.14 TCGA-JY-A93E-01 11 64128017 64128017 C T RPS6KA4 Missense_Mutation p.R139C 0.09 deleterious(0) probably_damaging(0.971) TCGA-JY-A93E-01 11 65307039 65307039 A T LTBP3 Missense_Mutation p.L1203Q 0.14 deleterious(0.04) benign(0.429) TCGA-JY-A93E-01 11 66384105 66384105 C T RBM14-RBM4 5'UTR 0.08 TCGA-JY-A93E-01 11 67024302 67024303 - T KDM2A 3'UTR 0.32 TCGA-JY-A93E-01 11 75146375 75146375 G A GDPD5 3'UTR 0.38 TCGA-JY-A93E-01 12 10783828 10783828 C G STYK1 Missense_Mutation p.E89D 0.10 tolerated(0.14) benign(0.223) TCGA-JY-A93E-01 12 10783829 10783829 T C STYK1 Missense_Mutation p.E89G 0.10 tolerated(0.07) benign(0.006) TCGA-JY-A93E-01 12 111747999 111747999 C T CUX2 Silent p.D471D 0.25 TCGA-JY-A93E-01 12 111787820 111787820 T A CUX2 3'UTR 0.12 TCGA-JY-A93E-01 12 120125101 120125101 C T CIT 3'UTR 0.24 TCGA-JY-A93E-01 12 132396489 132396489 C T ULK1 Silent p.S317S 0.22 TCGA-JY-A93E-01 12 3120205 3120205 C T TEAD4 Missense_Mutation p.R88W 0.24 deleterious(0) probably_damaging(0.973) TCGA-JY-A93E-01 12 42711657 42711657 C A ZCRB1 Missense_Mutation p.V53F 0.18 deleterious(0) probably_damaging(0.997) TCGA-JY-A93E-01 12 4835983 4835983 C T GALNT8 Missense_Mutation p.T166M 0.22 tolerated(0.12) benign(0.246) TCGA-JY-A93E-01 12 58009787 58009788 - T ARHGEF25 Frame_Shift_Ins p.D509* 0.26 TCGA-JY-A93E-01 12 68642504 68642504 A G IL22 3'UTR 0.24 TCGA-JY-A93E-01 13 101184272 101184272 C T GGACT 3'UTR 0.29 TCGA-JY-A93E-01 13 88328123 88328123 C T SLITRK5 Silent p.V160V 0.55 TCGA-JY-A93E-01 14 105361240 105361240 C T CEP170B Missense_Mutation p.P1537L 0.32 deleterious_low_confidence(0.04) benign(0.287) TCGA-JY-A93E-01 14 21571353 21571353 G A TMEM253 Missense_Mutation p.S197N 0.09 tolerated_low_confidence(0.25) benign(0.005) TCGA-JY-A93E-01 14 36985979 36985979 T A NKX2-1 3'UTR 0.16 TCGA-JY-A93E-01 14 45668128 45668128 A T FANCM Missense_Mutation p.M2000L 0.63 tolerated(0.1) benign(0.194) TCGA-JY-A93E-01 14 58048022 58048022 G T SLC35F4 Silent p.A275A 0.14 TCGA-JY-A93E-01 14 61177320 61177320 G A SIX4 3'UTR 0.24 TCGA-JY-A93E-01 14 73406569 73406569 C T DCAF4 Missense_Mutation p.P51L 0.15 deleterious(0) possibly_damaging(0.707) TCGA-JY-A93E-01 14 76965244 76965244 C T ESRRB Intron 0.09 TCGA-JY-A93E-01 14 80327554 80327554 G A NRXN3 Intron 0.44 TCGA-JY-A93E-01 14 96730429 96730429 G A BDKRB1 Missense_Mutation p.R137H 0.29 tolerated(0.53) benign(0.018) TCGA-JY-A93E-01 15 49127098 49127098 C T SHC4 Silent p.A535A 0.36 TCGA-JY-A93E-01 15 54305910 54305910 C G UNC13C Silent p.L270L 0.24 TCGA-JY-A93E-01 15 60803593 60803593 C T RORA Missense_Mutation p.V251I 0.21 tolerated(0.52) benign(0.01) TCGA-JY-A93E-01 15 63004130 63004130 C T TLN2 Missense_Mutation p.R830W 0.27 deleterious(0) possibly_damaging(0.508) TCGA-JY-A93E-01 15 76588003 76588003 T G ETFA Missense_Mutation p.N39H 0.25 tolerated(0.1) benign(0.311) TCGA-JY-A93E-01 15 78290609 78290609 G A TBC1D2B Missense_Mutation p.R929W 0.15 deleterious(0) probably_damaging(0.993) TCGA-JY-A93E-01 15 84909376 84909376 C T GOLGA6L4 Missense_Mutation p.R424W 0.17 tolerated(0.09) unknown(0) TCGA-JY-A93E-01 15 85486698 85486698 C T SLC28A1 Missense_Mutation p.T535M 0.22 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 16 1779535 1779535 G A MAPK8IP3 Silent p.Q186Q 0.21 TCGA-JY-A93E-01 16 31392248 31392248 C G ITGAX Missense_Mutation p.H1103D 0.14 deleterious(0.02) possibly_damaging(0.598) TCGA-JY-A93E-01 16 32077620 32077620 C A IGHV3OR16-9 Missense_Mutation p.L79M 0.12 deleterious_low_confidence(0.01) possibly_damaging(0.644) TCGA-JY-A93E-01 16 53358004 53358004 G A CHD9 Missense_Mutation p.G2615R 0.31 unknown(0) TCGA-JY-A93E-01 16 55608567 55608567 C T LPCAT2 Nonsense_Mutation p.R414* 0.32 TCGA-JY-A93E-01 16 57850388 57850388 G C CTD-2600O9.1 Missense_Mutation p.G103R 0.28 probably_damaging(0.98) TCGA-JY-A93E-01 16 57996893 57996893 C T CNGB1 Silent p.T122T 0.20 TCGA-JY-A93E-01 16 67166782 67166782 T C C16orf70 Silent p.L140L 0.16 TCGA-JY-A93E-01 16 71113857 71113857 T C HYDIN Splice_Site p.X557_splice 0.11 TCGA-JY-A93E-01 16 71679091 71679091 G C PHLPP2 3'UTR 0.27 TCGA-JY-A93E-01 17 1563149 1563149 C A PRPF8 Missense_Mutation p.L1644F 0.25 deleterious(0.03) benign(0.049) TCGA-JY-A93E-01 17 37074987 37074987 G A LASP1 Missense_Mutation p.G248S 0.09 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 17 39221973 39221973 C T KRTAP2-4 Missense_Mutation p.R42H 0.20 deleterious(0) probably_damaging(0.996) TCGA-JY-A93E-01 17 4701691 4701691 G T PSMB6 Missense_Mutation p.A232S 0.17 tolerated(1) benign(0) TCGA-JY-A93E-01 17 47482177 47482177 A T PHB 3'UTR 0.21 TCGA-JY-A93E-01 17 48167781 48167781 C T ITGA3 3'Flank 0.10 TCGA-JY-A93E-01 17 53400162 53400162 C T HLF 3'UTR 0.21 TCGA-JY-A93E-01 17 57183906 57183906 C G TRIM37 5'UTR 0.25 TCGA-JY-A93E-01 17 57651315 57651315 C T DHX40 Missense_Mutation p.A254V 0.31 tolerated(0.07) benign(0.007) TCGA-JY-A93E-01 17 59482957 59482957 G A TBX2 Silent p.P482P 0.09 TCGA-JY-A93E-01 17 66538286 66538286 C T FAM20A Missense_Mutation p.A317T 0.13 deleterious(0) probably_damaging(0.992) TCGA-JY-A93E-01 17 6704115 6704115 G A TEKT1 Nonsense_Mutation p.Q334* 0.45 TCGA-JY-A93E-01 17 74395954 74395954 G A UBE2O Missense_Mutation p.P402S 0.17 tolerated(0.57) possibly_damaging(0.556) TCGA-JY-A93E-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.47 TCGA-JY-A93E-01 17 76456290 76456290 T C DNAH17 Missense_Mutation p.E3116G 0.30 benign(0.234) TCGA-JY-A93E-01 17 78086727 78086727 C T GAA Silent p.C647C 0.20 TCGA-JY-A93E-01 17 80042404 80042404 G A FASN Missense_Mutation p.P1585S 0.15 deleterious(0.02) possibly_damaging(0.608) TCGA-JY-A93E-01 17 9808122 9808122 C T RCVRN Missense_Mutation p.V126I 0.25 tolerated(0.23) benign(0.014) TCGA-JY-A93E-01 18 31241598 31241598 C G ASXL3 Missense_Mutation p.T125S 0.26 benign(0.004) TCGA-JY-A93E-01 18 3188780 3188780 C T MYOM1 Missense_Mutation p.R246Q 0.53 deleterious(0.01) probably_damaging(0.917) TCGA-JY-A93E-01 18 51025797 51025797 G A DCC Missense_Mutation p.R1343H 0.08 deleterious(0) probably_damaging(0.946) TCGA-JY-A93E-01 19 20228706 20228715 AAAGGTTGTG - ZNF90 Frame_Shift_Del p.G116Vfs*19 0.48 TCGA-JY-A93E-01 19 20236058 20236058 G A CTC-260E6.2 RNA 0.13 TCGA-JY-A93E-01 19 23836454 23836454 T C ZNF675 Silent p.E427E 0.17 TCGA-JY-A93E-01 19 33289213 33289213 G C TDRD12 Splice_Site p.X544_splice 0.30 TCGA-JY-A93E-01 19 38033451 38033451 C A ZNF793 3'UTR 0.45 TCGA-JY-A93E-01 19 38127108 38127108 A C ZFP30 Missense_Mutation p.C112G 0.15 tolerated(0.31) benign(0.008) TCGA-JY-A93E-01 19 40321105 40321105 G A DYRK1B Silent p.D94D 0.14 TCGA-JY-A93E-01 19 4217407 4217407 C T ANKRD24 Silent p.A750A 0.64 TCGA-JY-A93E-01 19 42353321 42353321 G A DMRTC2 Missense_Mutation p.R251H 0.58 tolerated(0.7) benign(0.001) TCGA-JY-A93E-01 19 42792111 42792112 - GCTG CIC Frame_Shift_Ins p.A307Gfs*9 0.34 TCGA-JY-A93E-01 19 49208014 49208014 C G FUT2 3'UTR 0.42 TCGA-JY-A93E-01 19 55494276 55494276 G A NLRP2 Missense_Mutation p.V404M 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-JY-A93E-01 19 58513732 58513732 C T CTD-2368P22.1 Missense_Mutation p.P85L 0.50 deleterious_low_confidence(0.02) possibly_damaging(0.859) TCGA-JY-A93E-01 19 58991386 58991386 G A ZNF446 Missense_Mutation p.G268R 0.16 tolerated(0.3) possibly_damaging(0.844) TCGA-JY-A93E-01 1 103364237 103364237 G T COL11A1 Silent p.G1411G 0.16 TCGA-JY-A93E-01 1 10725216 10725216 G A CASZ1 Silent p.G143G 0.19 TCGA-JY-A93E-01 1 108231089 108231089 T G VAV3 Intron 0.05 TCGA-JY-A93E-01 1 115167965 115167965 C T DENND2C Missense_Mutation p.R214H 0.16 deleterious(0.03) probably_damaging(0.975) TCGA-JY-A93E-01 1 1164049 1164049 G A SDF4 Missense_Mutation p.S42L 0.31 deleterious(0) possibly_damaging(0.463) TCGA-JY-A93E-01 1 11917519 11917519 G T NPPB 3'Flank 0.40 TCGA-JY-A93E-01 1 152082656 152082656 G A TCHH Missense_Mutation p.R1013C 0.32 unknown(0) TCGA-JY-A93E-01 1 152281390 152281390 G A FLG Missense_Mutation p.A1991V 0.27 possibly_damaging(0.499) TCGA-JY-A93E-01 1 155217661 155217661 C T FAM189B Missense_Mutation p.R640Q 0.45 deleterious(0) probably_damaging(0.974) TCGA-JY-A93E-01 1 155261729 155261729 C T PKLR Splice_Site p.X479_splice 0.10 TCGA-JY-A93E-01 1 157667559 157667559 G A FCRL3 Missense_Mutation p.T150I 0.30 tolerated(0.46) benign(0.02) TCGA-JY-A93E-01 1 16895640 16895640 A T NBPF1 Missense_Mutation p.S848T 0.09 tolerated(0.2) possibly_damaging(0.652) TCGA-JY-A93E-01 1 169581488 169581488 C T SELP Missense_Mutation p.G310R 0.12 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 1 173776428 173776428 C T CENPL Missense_Mutation p.D133N 0.32 deleterious(0) probably_damaging(0.993) TCGA-JY-A93E-01 1 186159975 186159975 G A HMCN1 3'UTR 0.13 TCGA-JY-A93E-01 1 221875950 221875950 A G DUSP10 Missense_Mutation p.I418T 0.16 deleterious(0) probably_damaging(0.998) TCGA-JY-A93E-01 1 228547658 228547658 G A OBSCN Intron 0.12 TCGA-JY-A93E-01 1 23236980 23236980 C T EPHB2 Missense_Mutation p.R871W 0.14 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 1 232561444 232561444 G A SIPA1L2 Silent p.S1507S 0.12 TCGA-JY-A93E-01 1 23519770 23519770 G T HTR1D Missense_Mutation p.L315M 0.33 deleterious(0.01) probably_damaging(1) TCGA-JY-A93E-01 1 236908054 236908054 G T ACTN2 Missense_Mutation p.A462S 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-JY-A93E-01 1 237666695 237666695 G A RYR2 Missense_Mutation p.E835K 0.15 possibly_damaging(0.526) TCGA-JY-A93E-01 1 27634105 27634105 C T WDTC1 3'UTR 0.18 TCGA-JY-A93E-01 1 32256313 32256313 C T SPOCD1 Missense_Mutation p.R1181H 0.16 tolerated(0.57) benign(0) TCGA-JY-A93E-01 1 3775330 3775330 C T DFFB Silent p.L55L 0.28 TCGA-JY-A93E-01 1 44132178 44132178 C T KDM4A Silent p.T243T 0.20 TCGA-JY-A93E-01 1 44422098 44422098 C T IPO13 Missense_Mutation p.R310C 0.20 deleterious(0) benign(0.129) TCGA-JY-A93E-01 1 6211107 6211107 G A CHD5 Missense_Mutation p.R327C 0.40 deleterious(0) possibly_damaging(0.586) TCGA-JY-A93E-01 1 62240965 62240965 G A INADL Missense_Mutation p.V270M 0.44 deleterious(0.03) probably_damaging(1) TCGA-JY-A93E-01 1 6682342 6682342 A G PHF13 3'UTR 0.19 TCGA-JY-A93E-01 1 74954920 74954920 C A TNNI3K Silent p.L824L 0.29 TCGA-JY-A93E-01 1 7904094 7904094 T - PER3 3'UTR 0.36 TCGA-JY-A93E-01 1 89271183 89271183 A G PKN2 Missense_Mutation p.K502R 0.23 tolerated(0.11) benign(0.216) TCGA-JY-A93E-01 1 9070276 9070276 G A SLC2A7 Missense_Mutation p.R348W 0.38 deleterious(0.02) probably_damaging(1) TCGA-JY-A93E-01 20 13279982 13279982 T C ISM1 Missense_Mutation p.I424T 0.30 deleterious(0) probably_damaging(0.993) TCGA-JY-A93E-01 20 1592044 1592052 ACGTGGTCG GTGTCA SIRPB1 Intron 0.09 TCGA-JY-A93E-01 20 17608209 17608212 TCTC - RRBP1 Frame_Shift_Del p.R523Sfs*59 0.32 TCGA-JY-A93E-01 20 20180466 20180466 G A C20orf26 Missense_Mutation p.V618M 0.13 deleterious(0) probably_damaging(0.997) TCGA-JY-A93E-01 20 22563118 22563118 G A FOXA2 Silent p.Y254Y 0.10 TCGA-JY-A93E-01 20 41101125 41101125 C T PTPRT Missense_Mutation p.G411S 0.31 deleterious(0.01) benign(0.208) TCGA-JY-A93E-01 20 42355376 42355376 C T GTSF1L 5'UTR 0.07 TCGA-JY-A93E-01 20 44424030 44424030 A G DNTTIP1 Missense_Mutation p.E107G 0.07 tolerated(0.32) benign(0.005) TCGA-JY-A93E-01 20 44641948 44641948 C T MMP9 Missense_Mutation p.T462M 0.08 deleterious(0) probably_damaging(0.996) TCGA-JY-A93E-01 20 47734363 47734363 G A STAU1 Missense_Mutation p.T487M 0.13 tolerated(0.06) benign(0.013) TCGA-JY-A93E-01 20 54824550 54824550 C T MC3R Silent p.H217H 0.32 TCGA-JY-A93E-01 20 54961428 54961428 G C AURKA Missense_Mutation p.H68Q 0.18 tolerated(1) benign(0.002) TCGA-JY-A93E-01 20 61981753 61981753 G A CHRNA4 Missense_Mutation p.T337M 0.18 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 21 45999672 45999672 A C KRTAP10-5 Missense_Mutation p.C262G 0.27 deleterious(0) probably_damaging(0.992) TCGA-JY-A93E-01 21 47856025 47856025 G A PCNT Missense_Mutation p.R2987Q 0.45 benign(0.006) TCGA-JY-A93E-01 22 25144934 25144935 - C PIWIL3 Frame_Shift_Ins p.N463Kfs*23 0.17 TCGA-JY-A93E-01 22 37603089 37603089 C T SSTR3 Missense_Mutation p.E252K 0.18 deleterious(0.01) probably_damaging(1) TCGA-JY-A93E-01 22 43089313 43089313 G A A4GALT Silent p.V215V 0.61 TCGA-JY-A93E-01 22 43267354 43267354 C T PACSIN2 3'UTR 0.58 TCGA-JY-A93E-01 22 50572967 50572967 C T MOV10L1 Missense_Mutation p.P660S 0.60 deleterious(0) probably_damaging(0.997) TCGA-JY-A93E-01 2 106774546 106774546 A C UXS1 Missense_Mutation p.F87V 0.20 tolerated(0.07) benign(0.22) TCGA-JY-A93E-01 2 109382709 109382709 C T RANBP2 Missense_Mutation p.P1905L 0.15 tolerated(0.05) benign(0) TCGA-JY-A93E-01 2 11052955 11052955 C T KCNF1 Missense_Mutation p.R135C 0.29 deleterious(0) possibly_damaging(0.517) TCGA-JY-A93E-01 2 114400757 114400757 T C RABL2A 3'UTR 0.28 TCGA-JY-A93E-01 2 160087471 160087471 G A TANC1 Missense_Mutation p.S1845N 0.18 tolerated_low_confidence(0.08) benign(0.244) TCGA-JY-A93E-01 2 163695038 163695038 G A KCNH7 5'UTR 0.29 TCGA-JY-A93E-01 2 170034503 170034503 C T LRP2 Silent p.T3401T 0.21 TCGA-JY-A93E-01 2 206050586 206050586 A T PARD3B Missense_Mutation p.S613C 0.24 deleterious(0) probably_damaging(0.989) TCGA-JY-A93E-01 2 210783388 210783388 G A UNC80 Splice_Site p.X1715_splice 0.29 TCGA-JY-A93E-01 2 212615383 212615383 T A ERBB4 Silent p.T201T 0.27 TCGA-JY-A93E-01 2 215821415 215821415 C T ABCA12 Missense_Mutation p.A2069T 0.34 deleterious(0) probably_damaging(0.997) TCGA-JY-A93E-01 2 239757124 239757124 C T TWIST2 Missense_Mutation p.R90C 0.12 deleterious(0) probably_damaging(0.998) TCGA-JY-A93E-01 2 29386778 29386778 C A CLIP4 Missense_Mutation p.S539Y 0.11 deleterious(0) possibly_damaging(0.866) TCGA-JY-A93E-01 2 29754905 29754905 G A ALK Missense_Mutation p.H344Y 0.19 tolerated(0.44) benign(0.001) TCGA-JY-A93E-01 2 42990955 42990955 C T OXER1 Missense_Mutation p.R122Q 0.13 tolerated(0.09) benign(0.388) TCGA-JY-A93E-01 2 44104795 44104795 G A ABCG8 Missense_Mutation p.G618R 0.17 tolerated(0.06) benign(0.363) TCGA-JY-A93E-01 2 5838133 5838133 G C SOX11 3'UTR 0.32 TCGA-JY-A93E-01 2 74362706 74362706 C A BOLA3 3'UTR 0.11 TCGA-JY-A93E-01 3 10370804 10370804 G A ATP2B2 Silent p.R1142R 0.17 TCGA-JY-A93E-01 3 152883303 152883303 G A RAP2B 3'UTR 0.18 TCGA-JY-A93E-01 3 195936290 195936290 G A ZDHHC19 Missense_Mutation p.P122L 0.22 deleterious(0.03) possibly_damaging(0.801) TCGA-JY-A93E-01 3 20042948 20042948 C T PP2D1 Missense_Mutation p.E222K 0.15 deleterious(0) probably_damaging(0.994) TCGA-JY-A93E-01 3 38058149 38058149 G A PLCD1 Silent p.F108F 0.21 TCGA-JY-A93E-01 3 38603922 38603922 C T SCN5A Missense_Mutation p.R1316Q 0.15 deleterious(0.04) probably_damaging(0.997) TCGA-JY-A93E-01 3 46415527 46415527 G A CCR5 3'UTR 0.25 TCGA-JY-A93E-01 3 46965112 46965112 G A CCDC12 Silent p.P110P 0.37 TCGA-JY-A93E-01 3 48964987 48964987 C T ARIH2 5'UTR 0.24 TCGA-JY-A93E-01 3 51664825 51664825 G A RAD54L2 Missense_Mutation p.V235I 0.20 tolerated(0.84) benign(0.01) TCGA-JY-A93E-01 3 52439267 52439267 G A BAP1 Silent p.S325S 0.17 TCGA-JY-A93E-01 3 54912965 54912965 C A CACNA2D3 Intron 0.23 TCGA-JY-A93E-01 3 54912966 54912966 T A CACNA2D3 Intron 0.24 TCGA-JY-A93E-01 3 58109286 58109286 C T FLNB Missense_Mutation p.T1198M 0.20 tolerated(0.24) benign(0.045) TCGA-JY-A93E-01 3 62189529 62189529 G A PTPRG Missense_Mutation p.G687E 0.16 tolerated(0.17) benign(0.001) TCGA-JY-A93E-01 4 122872662 122872662 C T TRPC3 Silent p.P58P 0.21 TCGA-JY-A93E-01 4 158255208 158255208 A T GRIA2 Missense_Mutation p.E401V 0.15 tolerated(0.2) benign(0.001) TCGA-JY-A93E-01 4 169604255 169604255 G A PALLD Splice_Site p.X420_splice 0.14 TCGA-JY-A93E-01 4 174458050 174458050 G A HAND2-AS1 RNA 0.13 TCGA-JY-A93E-01 4 189013060 189013060 A G TRIML2 Missense_Mutation p.C211R 0.18 tolerated(0.21) probably_damaging(0.927) TCGA-JY-A93E-01 4 20618585 20618585 C T SLIT2 Silent p.N1300N 0.11 TCGA-JY-A93E-01 4 2954037 2954037 C T NOP14 Missense_Mutation p.A279T 0.15 deleterious(0.01) probably_damaging(0.992) TCGA-JY-A93E-01 4 40246137 40246137 G A RHOH 3'UTR 0.15 TCGA-JY-A93E-01 4 4303750 4303750 G A ZBTB49 Missense_Mutation p.D63N 0.27 deleterious(0) probably_damaging(0.999) TCGA-JY-A93E-01 4 69536007 69536007 A T UGT2B15 Missense_Mutation p.F110L 0.17 tolerated(0.18) benign(0.049) TCGA-JY-A93E-01 4 72897917 72897917 G A NPFFR2 Missense_Mutation p.R100K 0.29 tolerated_low_confidence(1) benign(0) TCGA-JY-A93E-01 4 90034253 90034253 G A TIGD2 Missense_Mutation p.R43H 0.21 tolerated(0.12) probably_damaging(0.998) TCGA-JY-A93E-01 5 110428075 110428075 T C WDR36 Missense_Mutation p.V30A 0.18 tolerated_low_confidence(0.7) benign(0) TCGA-JY-A93E-01 5 127681105 127681105 C T FBN2 Missense_Mutation p.R1054H 0.23 deleterious(0.01) probably_damaging(0.915) TCGA-JY-A93E-01 5 131396415 131396415 G A IL3 Missense_Mutation p.V6I 0.41 tolerated_low_confidence(1) unknown(0) TCGA-JY-A93E-01 5 131398459 131398459 C T IL3 Missense_Mutation p.T145M 0.21 benign(0) TCGA-JY-A93E-01 5 137087493 137087493 T C HNRNPA0 3'UTR 0.17 TCGA-JY-A93E-01 5 13719110 13719110 C T DNAH5 Missense_Mutation p.R4127H 0.11 possibly_damaging(0.812) TCGA-JY-A93E-01 5 13752328 13752328 A G DNAH5 Missense_Mutation p.L3648P 0.71 probably_damaging(0.928) TCGA-JY-A93E-01 5 140166141 140166141 G A PCDHA1 Missense_Mutation p.R89Q 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.874) TCGA-JY-A93E-01 5 140229433 140229433 C T PCDHA9 Silent p.N451N 0.20 TCGA-JY-A93E-01 5 140750854 140750854 C T PCDHGB3 Missense_Mutation p.T298M 0.15 deleterious(0) probably_damaging(0.952) TCGA-JY-A93E-01 5 140799290 140799290 C T PCDHGB7 Nonsense_Mutation p.R622* 0.21 TCGA-JY-A93E-01 5 1409228 1409228 C T SLC6A3 Missense_Mutation p.V471I 0.12 tolerated(0.14) benign(0.229) TCGA-JY-A93E-01 5 145197590 145197590 G A PRELID2 Nonsense_Mutation p.Q91* 0.25 TCGA-JY-A93E-01 5 145609304 145609304 C T RBM27 Silent p.D140D 0.31 TCGA-JY-A93E-01 5 159696549 159696549 G A CCNJL Intron 0.22 TCGA-JY-A93E-01 5 161128546 161128546 C A GABRA6 Missense_Mutation p.L377M 0.36 tolerated(0.24) benign(0.077) TCGA-JY-A93E-01 5 173386302 173386302 C T CPEB4 3'UTR 0.24 TCGA-JY-A93E-01 5 21459818 21459818 G A GUSBP1 RNA 0.24 TCGA-JY-A93E-01 5 79027241 79027241 G A CMYA5 Missense_Mutation p.E885K 0.26 probably_damaging(0.959) TCGA-JY-A93E-01 6 110012537 110012537 T C FIG4 5'UTR 0.23 TCGA-JY-A93E-01 6 132910410 132910410 G A TAAR5 Missense_Mutation p.P139L 0.18 deleterious(0.01) probably_damaging(1) TCGA-JY-A93E-01 6 135303637 135303637 C T HBS1L Missense_Mutation p.R519Q 0.22 deleterious(0.01) probably_damaging(0.941) TCGA-JY-A93E-01 6 147525742 147525742 A T STXBP5 Missense_Mutation p.Q25L 0.44 tolerated(0.29) benign(0.001) TCGA-JY-A93E-01 6 16130975 16130975 C T MYLIP Missense_Mutation p.T92I 0.28 deleterious(0) possibly_damaging(0.739) TCGA-JY-A93E-01 6 25500404 25500404 T C LRRC16A Silent p.L446L 0.19 TCGA-JY-A93E-01 6 33424528 33424528 G A ZBTB9 3'UTR 0.26 TCGA-JY-A93E-01 6 37247304 37247304 G A TBC1D22B Missense_Mutation p.R113Q 0.21 tolerated(0.43) benign(0.001) TCGA-JY-A93E-01 6 38747798 38747798 G A DNAH8 Missense_Mutation p.R482H 0.18 benign(0.005) TCGA-JY-A93E-01 6 41057364 41057364 C T NFYA Missense_Mutation p.A119V 0.24 tolerated(0.41) unknown(0) TCGA-JY-A93E-01 6 41712488 41712488 C T PGC Missense_Mutation p.G40R 0.09 tolerated(0.06) benign(0.003) TCGA-JY-A93E-01 6 43255012 43255012 C T TTBK1 3'UTR 0.28 TCGA-JY-A93E-01 6 49439801 49439801 A T CENPQ Missense_Mutation p.K61N 0.23 tolerated(0.05) benign(0.11) TCGA-JY-A93E-01 6 54001550 54001550 G A MLIP Intron 0.35 TCGA-JY-A93E-01 6 56035613 56035613 T C COL21A1 Missense_Mutation p.Q287R 0.07 deleterious(0.01) benign(0.303) TCGA-JY-A93E-01 6 88757798 88757798 G A SPACA1 Missense_Mutation p.A59T 0.23 tolerated_low_confidence(0.5) benign(0.01) TCGA-JY-A93E-01 6 96654915 96654915 G T FUT9 3'UTR 0.27 TCGA-JY-A93E-01 6 97609916 97609916 C G MMS22L Missense_Mutation p.G1116A 0.10 tolerated(0.91) benign(0.324) TCGA-JY-A93E-01 7 102109466 102109466 C T LRWD1 Silent p.I395I 0.21 TCGA-JY-A93E-01 7 1037306 1037306 C T C7orf50 Silent p.P180P 0.19 TCGA-JY-A93E-01 7 108128261 108128261 G A PNPLA8 Missense_Mutation p.A607V 0.19 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 7 112460239 112460239 G T C7orf60 3'UTR 0.17 TCGA-JY-A93E-01 7 112724407 112724407 C T GPR85 Missense_Mutation p.A124T 0.72 deleterious(0.04) benign(0.223) TCGA-JY-A93E-01 7 128036730 128036730 G A IMPDH1 Silent p.A395A 0.14 TCGA-JY-A93E-01 7 132469837 132469837 A G CHCHD3 3'UTR 0.35 TCGA-JY-A93E-01 7 156798205 156798205 G A MNX1 3'UTR 0.50 TCGA-JY-A93E-01 7 5336574 5336574 G A SLC29A4 Silent p.A209A 0.57 TCGA-JY-A93E-01 7 64167088 64167088 G A ZNF107 Missense_Mutation p.E136K 0.09 tolerated(0.06) benign(0.245) TCGA-JY-A93E-01 7 6662290 6662290 C T ZNF853 Silent p.L556L 0.17 TCGA-JY-A93E-01 7 66773930 66773930 G A STAG3L4 RNA 0.19 TCGA-JY-A93E-01 7 70254831 70254831 C T AUTS2 Missense_Mutation p.R877W 0.19 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 7 75956508 75956508 G T YWHAG 3'UTR 0.25 TCGA-JY-A93E-01 8 104178509 104178509 T A BAALC Intron 0.29 TCGA-JY-A93E-01 8 123985559 123985559 C A ZHX2 3'UTR 0.27 TCGA-JY-A93E-01 8 1616580 1616580 G T DLGAP2 Missense_Mutation p.Q552H 0.25 deleterious(0) probably_damaging(0.999) TCGA-JY-A93E-01 8 19809439 19809439 C T LPL Missense_Mutation p.R137W 0.44 deleterious(0) possibly_damaging(0.802) TCGA-JY-A93E-01 8 21552006 21552006 G A GFRA2 Silent p.N414N 0.23 TCGA-JY-A93E-01 8 35608203 35608203 G A UNC5D Missense_Mutation p.G680E 0.25 deleterious(0) probably_damaging(1) TCGA-JY-A93E-01 8 40012554 40012554 T G C8orf4 3'UTR 0.21 TCGA-JY-A93E-01 8 53477796 53477796 G A FAM150A Silent p.G7G 0.22 TCGA-JY-A93E-01 8 67772205 67772205 T C SGK3 3'UTR 0.14 TCGA-JY-A93E-01 9 108370218 108370218 C T FKTN Nonsense_Mutation p.R256* 0.22 TCGA-JY-A93E-01 9 130577827 130577827 C T ENG 3'UTR 0.28 TCGA-JY-A93E-01 9 133945187 133945187 G A LAMC3 Missense_Mutation p.G1007S 0.32 tolerated(1) benign(0.053) TCGA-JY-A93E-01 9 73399063 73399063 G A TRPM3 Missense_Mutation p.S369L 0.23 deleterious(0) possibly_damaging(0.826) TCGA-JY-A93E-01 9 91606457 91606457 G A C9orf47 Missense_Mutation p.E107K 0.20 deleterious_low_confidence(0) possibly_damaging(0.502) TCGA-JY-A93E-01 9 95177605 95177605 T C OMD Silent p.Q365Q 0.19 TCGA-JY-A93E-01 X 107413203 107413203 C T COL4A6 Silent p.P1180P 0.57 TCGA-JY-A93E-01 X 107464499 107464499 G A COL4A6 Silent p.L85L 0.51 TCGA-JY-A93E-01 X 119660674 119660674 T G CUL4B Missense_Mutation p.D895A 0.37 deleterious(0) benign(0.401) TCGA-JY-A93E-01 X 130220601 130220601 G A ARHGAP36 Missense_Mutation p.R483Q 0.69 tolerated(0.36) benign(0.001) TCGA-JY-A93E-01 X 144907008 144907008 A G SLITRK2 3'UTR 0.57 TCGA-JY-A93E-01 X 151900213 151900213 C T MAGEA12 Silent p.V196V 0.70 TCGA-JY-A93E-01 X 51488633 51488633 A C GSPT2 3'UTR 0.14 TCGA-JY-A93E-01 X 57935854 57935854 G A ZXDA Missense_Mutation p.A334V 0.57 tolerated(1) benign(0.062) TCGA-JY-A93E-01 X 70824170 70824170 C T ACRC Missense_Mutation p.A348V 0.50 unknown(0) TCGA-JY-A93E-01 X 71359668 71359668 C T NHSL2 Missense_Mutation p.P757L 0.56 deleterious(0) possibly_damaging(0.793) TCGA-JY-A93E-01 X 72347489 72347489 T A NAP1L6 Missense_Mutation p.K78M 0.26 deleterious(0) probably_damaging(0.983) TCGA-JY-A93E-01 X 75003938 75003938 C A MAGEE2 Missense_Mutation p.D317Y 0.64 deleterious(0.01) possibly_damaging(0.819) TCGA-JY-A93E-01 X 75004272 75004272 T G MAGEE2 Missense_Mutation p.K205N 0.31 deleterious(0) probably_damaging(0.998) TCGA-JY-A93E-01 X 90690543 90690543 C G PABPC5 5'UTR 0.63 TCGA-JY-A93E-01 X 9841752 9841752 G A SHROOM2 Missense_Mutation p.G76S 0.71 tolerated(0.36) benign(0.008) TCGA-JY-A93F-01 10 102789899 102789899 G A PDZD7 Silent p.S26S 0.37 TCGA-JY-A93F-01 10 103912168 103912168 A T NOLC1 Translation_Start_Site p.M1? 0.24 deleterious_low_confidence(0) possibly_damaging(0.697) TCGA-JY-A93F-01 10 105049741 105049741 G A INA 3'UTR 0.25 TCGA-JY-A93F-01 10 125426291 125426291 C T GPR26 Missense_Mutation p.A123V 0.47 deleterious(0) probably_damaging(0.968) TCGA-JY-A93F-01 10 127677338 127677338 C T FANK1 Intron 0.46 TCGA-JY-A93F-01 10 18829711 18829711 G T CACNB2 3'UTR 0.33 TCGA-JY-A93F-01 10 62631234 62631234 T G RHOBTB1 3'UTR 0.26 TCGA-JY-A93F-01 10 89717619 89717619 T G PTEN Missense_Mutation p.F215C 0.35 deleterious(0.02) benign(0.315) TCGA-JY-A93F-01 10 97960771 97960771 G T BLNK Silent p.P326P 0.27 TCGA-JY-A93F-01 11 113933968 113933968 G A ZBTB16 5'UTR 0.50 TCGA-JY-A93F-01 11 118343016 118343017 - G KMT2A Frame_Shift_Ins p.A383Gfs*6 0.32 TCGA-JY-A93F-01 11 118348808 118348808 G A KMT2A Missense_Mutation p.R1154Q 0.39 probably_damaging(0.99) TCGA-JY-A93F-01 11 14498481 14498481 C T COPB1 Missense_Mutation p.R480H 0.09 deleterious(0) possibly_damaging(0.908) TCGA-JY-A93F-01 11 293646 293646 C T ATHL1 Silent p.F511F 0.38 TCGA-JY-A93F-01 11 40137317 40137317 G A LRRC4C Nonsense_Mutation p.R176* 0.33 TCGA-JY-A93F-01 11 44089274 44089274 G A ACCS Missense_Mutation p.E33K 0.28 tolerated(0.06) benign(0.034) TCGA-JY-A93F-01 11 46895129 46895129 G A LRP4 Silent p.N1415N 0.38 TCGA-JY-A93F-01 11 63953731 63953731 G A STIP1 5'UTR 0.34 TCGA-JY-A93F-01 11 6816277 6816277 G T OR6A2 Silent p.A221A 0.33 TCGA-JY-A93F-01 11 73021802 73021802 C T ARHGEF17 Missense_Mutation p.R707C 0.46 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-JY-A93F-01 11 74559456 74559456 G A XRRA1 Missense_Mutation p.P470S 0.33 tolerated(0.06) benign(0.023) TCGA-JY-A93F-01 11 8662484 8662484 G T TRIM66 Missense_Mutation p.Q333K 0.35 deleterious(0.02) benign(0.062) TCGA-JY-A93F-01 12 133351713 133351713 G A GOLGA3 Intron 0.33 TCGA-JY-A93F-01 12 21370110 21370110 G T SLCO1B1 Missense_Mutation p.A519S 0.24 deleterious(0.01) probably_damaging(0.976) TCGA-JY-A93F-01 12 22601650 22601650 T C C2CD5 3'UTR 0.25 TCGA-JY-A93F-01 12 49425503 49425503 G A KMT2D Nonsense_Mutation p.Q4329* 0.23 TCGA-JY-A93F-01 12 52757174 52757174 G A KRT85 Silent p.A269A 0.37 TCGA-JY-A93F-01 12 52910941 52910941 T C KRT5 Missense_Mutation p.N390D 0.17 deleterious(0.03) possibly_damaging(0.534) TCGA-JY-A93F-01 12 52913949 52913949 A C KRT5 Silent p.G44G 0.26 TCGA-JY-A93F-01 12 81331514 81331514 G A LIN7A 5'UTR 0.36 TCGA-JY-A93F-01 12 81839369 81839369 G T PPFIA2 Missense_Mutation p.S179Y 0.21 deleterious(0) probably_damaging(0.984) TCGA-JY-A93F-01 12 9728362 9728362 G T RP11-726G1.1 RNA 0.33 TCGA-JY-A93F-01 12 9728368 9728368 G A RP11-726G1.1 RNA 0.34 TCGA-JY-A93F-01 13 20796579 20796579 C A GJB6 3'UTR 0.45 TCGA-JY-A93F-01 13 21355491 21355491 T C XPO4 3'UTR 0.05 TCGA-JY-A93F-01 13 39358714 39358714 C T FREM2 Missense_Mutation p.P1930S 0.10 deleterious(0.04) benign(0.078) TCGA-JY-A93F-01 13 39622028 39622028 C T NHLRC3 Missense_Mutation p.P337S 0.32 deleterious(0) probably_damaging(0.998) TCGA-JY-A93F-01 13 61987736 61987736 C T PCDH20 Missense_Mutation p.V166I 0.35 tolerated(0.92) benign(0) TCGA-JY-A93F-01 14 55833195 55833195 T A ATG14 3'UTR 0.29 TCGA-JY-A93F-01 14 55833227 55833227 G C ATG14 3'UTR 0.39 TCGA-JY-A93F-01 15 25653719 25653719 T C UBE3A Intron 0.36 TCGA-JY-A93F-01 15 33010353 33010353 G A GREM1 5'UTR 0.22 TCGA-JY-A93F-01 15 67482843 67482843 C T SMAD3 Missense_Mutation p.S416F 0.26 deleterious(0) possibly_damaging(0.807) TCGA-JY-A93F-01 15 84237334 84237334 G A SH3GL3 Missense_Mutation p.V81M 0.23 tolerated(0.06) possibly_damaging(0.87) TCGA-JY-A93F-01 15 91181743 91181743 G A CRTC3 Silent p.P444P 0.07 TCGA-JY-A93F-01 16 11001372 11001372 C T CIITA Silent p.L675L 0.56 TCGA-JY-A93F-01 16 1827862 1827862 G A SPSB3 Missense_Mutation p.H203Y 0.32 deleterious(0) probably_damaging(1) TCGA-JY-A93F-01 16 2293218 2293218 C G ECI1 Missense_Mutation p.D191H 0.38 deleterious(0) probably_damaging(0.997) TCGA-JY-A93F-01 16 4932024 4932024 C A UBN1 3'UTR 0.23 TCGA-JY-A93F-01 16 57060578 57060581 CCCT - NLRC5 Frame_Shift_Del p.P575Sfs*20 0.53 TCGA-JY-A93F-01 16 69974083 69974083 G A WWP2 3'UTR 0.22 TCGA-JY-A93F-01 16 71887901 71887901 G A ATXN1L 3'UTR 0.40 TCGA-JY-A93F-01 17 18638508 18638508 C T TRIM16L Missense_Mutation p.T261M 0.35 deleterious(0) possibly_damaging(0.671) TCGA-JY-A93F-01 17 3144529 3144529 T C OR1D4 RNA 0.56 TCGA-JY-A93F-01 17 39216185 39216185 C T KRTAP2-3 Missense_Mutation p.V40M 0.40 deleterious(0) probably_damaging(0.997) TCGA-JY-A93F-01 17 41571170 41571170 C T DHX8 Silent p.V376V 0.32 TCGA-JY-A93F-01 17 4996433 4996433 C A ZFP3 3'UTR 0.32 TCGA-JY-A93F-01 17 56432304 56432316 TCACACAGCCTGT - RNF43 Frame_Shift_Del p.Q781M 0.31 TCGA-JY-A93F-01 17 59486690 59486690 A G TBX2 3'UTR 0.27 TCGA-JY-A93F-01 17 65989137 65989137 G C C17orf58 Intron 0.29 TCGA-JY-A93F-01 17 76168023 76168023 G A SYNGR2 3'UTR 0.36 TCGA-JY-A93F-01 17 76672223 76672223 C T CYTH1 Missense_Mutation p.E383K 0.31 deleterious(0) benign(0.195) TCGA-JY-A93F-01 18 67869157 67869157 G T RTTN Missense_Mutation p.Q154K 0.41 tolerated(0.07) benign(0.195) TCGA-JY-A93F-01 18 77895502 77895502 G C ADNP2 Missense_Mutation p.A736P 0.22 deleterious(0) probably_damaging(0.999) TCGA-JY-A93F-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.26 probably_damaging(0.99) TCGA-JY-A93F-01 19 1457140 1457140 C G APC2 Missense_Mutation p.R369G 0.44 probably_damaging(0.999) TCGA-JY-A93F-01 19 15281251 15281251 G A NOTCH3 Missense_Mutation p.R1669C 0.39 deleterious(0) probably_damaging(0.999) TCGA-JY-A93F-01 19 39028578 39028578 G T RYR1 Missense_Mutation p.L3889F 0.35 possibly_damaging(0.667) TCGA-JY-A93F-01 19 407400 407400 C T C2CD4C Missense_Mutation p.R321H 0.40 deleterious(0) probably_damaging(0.994) TCGA-JY-A93F-01 19 4323073 4323073 G T FSD1 Missense_Mutation p.S377I 0.26 deleterious(0) possibly_damaging(0.548) TCGA-JY-A93F-01 19 44058864 44058864 C T XRCC1 Silent p.L116L 0.37 TCGA-JY-A93F-01 19 45593410 45593410 G A GEMIN7 Missense_Mutation p.R13Q 0.41 tolerated(0.06) benign(0.018) TCGA-JY-A93F-01 19 47761647 47761647 C A CCDC9 5'UTR 0.36 TCGA-JY-A93F-01 19 56012123 56012123 G T SSC5D Missense_Mutation p.G857W 0.51 probably_damaging(1) TCGA-JY-A93F-01 19 56156448 56156448 C T ZNF581 Missense_Mutation p.R171C 0.28 deleterious(0) probably_damaging(0.997) TCGA-JY-A93F-01 19 56952917 56952917 G T ZNF667 Silent p.R483R 0.30 TCGA-JY-A93F-01 19 58132263 58132263 C T ZNF134 Missense_Mutation p.P259L 0.35 deleterious(0.01) probably_damaging(1) TCGA-JY-A93F-01 1 151689182 151689182 G A CELF3 5'UTR 0.33 TCGA-JY-A93F-01 1 151748932 151748932 G T TDRKH Missense_Mutation p.H343N 0.34 tolerated(0.11) possibly_damaging(0.723) TCGA-JY-A93F-01 1 27097621 27097622 - A ARID1A Frame_Shift_Ins p.W1073Mfs*32 0.25 TCGA-JY-A93F-01 1 3782553 3782553 C T DFFB Missense_Mutation p.P140L 0.36 tolerated(0.13) benign(0.02) TCGA-JY-A93F-01 1 37947279 37947279 G T ZC3H12A Missense_Mutation p.V221L 0.45 deleterious(0.03) possibly_damaging(0.9) TCGA-JY-A93F-01 1 91381005 91381005 G T ZNF644 3'UTR 0.22 TCGA-JY-A93F-01 20 39709878 39709880 GAG - TOP1 In_Frame_Del 0.28 TCGA-JY-A93F-01 21 35478299 35478299 A G SLC5A3 3'UTR 0.05 TCGA-JY-A93F-01 21 45524557 45524557 G T TRAPPC10 3'UTR 0.17 TCGA-JY-A93F-01 22 38051980 38051980 G A SH3BP1 3'UTR 0.30 TCGA-JY-A93F-01 2 159488428 159488428 G A PKP4 Silent p.Q439Q 0.32 TCGA-JY-A93F-01 2 219940992 219940992 C T NHEJ1 3'UTR 0.32 TCGA-JY-A93F-01 2 242170211 242170211 C T HDLBP Missense_Mutation p.R1146H 0.16 tolerated(0.11) benign(0.364) TCGA-JY-A93F-01 2 26672862 26672862 A T DRC1 Splice_Site p.X504_splice 0.41 TCGA-JY-A93F-01 2 33808901 33808901 G A FAM98A 3'UTR 0.44 TCGA-JY-A93F-01 2 71160034 71160034 G T VAX2 Silent p.L191L 0.36 TCGA-JY-A93F-01 2 85046562 85046562 C T DNAH6 3'UTR 0.23 TCGA-JY-A93F-01 2 90139101 90139101 C G IGKV1D-16 5'UTR 0.14 TCGA-JY-A93F-01 3 121126164 121126164 C T STXBP5L Missense_Mutation p.P912S 0.24 tolerated(0.84) probably_damaging(1) TCGA-JY-A93F-01 3 30732976 30732976 C T TGFBR2 Missense_Mutation p.T555I 0.40 deleterious(0) probably_damaging(1) TCGA-JY-A93F-01 3 47545863 47545863 C T ELP6 Missense_Mutation p.V94I 0.38 tolerated(0.21) benign(0.002) TCGA-JY-A93F-01 3 72427500 72427500 C T RYBP 3'UTR 0.34 TCGA-JY-A93F-01 4 110972735 110972735 G T ELOVL6 Missense_Mutation p.A186E 0.39 deleterious(0) probably_damaging(0.958) TCGA-JY-A93F-01 4 123147861 123147861 G A KIAA1109 Splice_Site p.X932_splice 0.48 TCGA-JY-A93F-01 4 44704975 44704975 C T GNPDA2 3'UTR 0.54 TCGA-JY-A93F-01 4 956346 956346 C T DGKQ Silent p.P697P 0.17 TCGA-JY-A93F-01 5 121786488 121786488 C T SNCAIP Missense_Mutation p.S649F 0.36 deleterious(0) possibly_damaging(0.864) TCGA-JY-A93F-01 5 124080411 124080411 G A ZNF608 Missense_Mutation p.S91F 0.34 deleterious(0) possibly_damaging(0.549) TCGA-JY-A93F-01 5 13692122 13692122 C T DNAH5 Missense_Mutation p.G4616R 0.33 probably_damaging(0.988) TCGA-JY-A93F-01 5 137759943 137759943 G C KDM3B Missense_Mutation p.W1384C 0.40 deleterious(0) probably_damaging(0.999) TCGA-JY-A93F-01 5 138729895 138729895 C A PROB1 Silent p.L292L 0.37 TCGA-JY-A93F-01 5 17275448 17275448 G T BASP1 Missense_Mutation p.E41D 0.39 deleterious(0.04) unknown(0) TCGA-JY-A93F-01 5 175775305 175775305 C A KIAA1191 Missense_Mutation p.A172S 0.13 tolerated(0.06) benign(0.015) TCGA-JY-A93F-01 5 176694593 176694593 C T NSD1 Missense_Mutation p.P1726L 0.51 deleterious(0) probably_damaging(1) TCGA-JY-A93F-01 5 176709465 176709465 G A NSD1 Splice_Site p.X1965_splice 0.32 TCGA-JY-A93F-01 5 32098533 32098533 C T PDZD2 Missense_Mutation p.L2671F 0.33 deleterious(0) probably_damaging(1) TCGA-JY-A93F-01 5 35814614 35814614 G A SPEF2 Missense_Mutation p.G1810R 0.39 tolerated(0.07) benign(0.362) TCGA-JY-A93F-01 5 65338949 65338949 G A ERBB2IP Missense_Mutation p.E451K 0.31 deleterious(0) probably_damaging(0.998) TCGA-JY-A93F-01 5 78135223 78135223 T A ARSB Missense_Mutation p.E390V 0.30 deleterious(0.04) probably_damaging(0.912) TCGA-JY-A93F-01 6 117658466 117658466 C A ROS1 Missense_Mutation p.C1706F 0.25 deleterious(0) probably_damaging(1) TCGA-JY-A93F-01 6 137522074 137522074 A - IFNGR1 Frame_Shift_Del p.Y269Ifs*8 0.32 TCGA-JY-A93F-01 6 15533520 15533520 G A DTNBP1 Silent p.D206D 0.33 TCGA-JY-A93F-01 6 27419848 27419848 G A ZNF184 Missense_Mutation p.T497M 0.38 deleterious(0) probably_damaging(0.999) TCGA-JY-A93F-01 6 30653411 30653411 T C PPP1R18 Missense_Mutation p.M129V 0.43 tolerated_low_confidence(0.55) benign(0.004) TCGA-JY-A93F-01 6 30695880 30695880 G A FLOT1 3'UTR 0.27 TCGA-JY-A93F-01 6 31323325 31323325 C A HLA-B Nonsense_Mutation p.E222* 0.27 TCGA-JY-A93F-01 6 37300161 37300161 G A TBC1D22B 3'UTR 0.42 TCGA-JY-A93F-01 6 99729215 99729215 C T FAXC Missense_Mutation p.S352N 0.09 deleterious_low_confidence(0.04) possibly_damaging(0.549) TCGA-JY-A93F-01 7 100676006 100676006 G T MUC17 Missense_Mutation p.A437S 0.16 possibly_damaging(0.804) TCGA-JY-A93F-01 7 111367457 111367457 T G DOCK4 3'Flank 0.26 TCGA-JY-A93F-01 7 138603524 138603524 A T KIAA1549 Nonsense_Mutation p.L283* 0.37 TCGA-JY-A93F-01 7 141831824 141831824 G A RP11-1220K2.2 Missense_Mutation p.V172M 0.32 deleterious(0.02) benign(0.073) TCGA-JY-A93F-01 7 149474801 149474801 C A ZNF467 5'Flank 0.37 TCGA-JY-A93F-01 7 151065005 151065005 G A NUB1 Missense_Mutation p.R373Q 0.30 tolerated(0.33) benign(0.014) TCGA-JY-A93F-01 7 151716773 151716773 T C GALNTL5 Missense_Mutation p.Y407H 0.13 deleterious(0) probably_damaging(0.976) TCGA-JY-A93F-01 8 102698799 102698799 C T NCALD 3'UTR 0.37 TCGA-JY-A93F-01 8 104427088 104427088 C T SLC25A32 Silent p.L26L 0.21 TCGA-JY-A93F-01 8 139601151 139601151 G A COL22A1 3'UTR 0.26 TCGA-JY-A93F-01 8 143623556 143623556 G A BAI1 Missense_Mutation p.G1321S 0.28 tolerated(0.36) possibly_damaging(0.862) TCGA-JY-A93F-01 8 28047324 28047324 G T ELP3 3'UTR 0.50 TCGA-JY-A93F-01 8 32621513 32621513 G A NRG1 Missense_Mutation p.A511T 0.24 tolerated(0.51) benign(0.02) TCGA-JY-A93F-01 8 49831433 49831433 G A SNAI2 Missense_Mutation p.S247F 0.28 tolerated(0.06) benign(0.126) TCGA-JY-A93F-01 8 60031650 60031650 G T TOX 5'UTR 0.29 TCGA-JY-A93F-01 8 73480515 73480515 G T KCNB2 Missense_Mutation p.L182F 0.26 deleterious(0.01) benign(0.234) TCGA-JY-A93F-01 8 79710313 79710313 T C IL7 Silent p.Q47Q 0.21 TCGA-JY-A93F-01 8 86573768 86573768 C A REXO1L1P Missense_Mutation p.K653N 0.03 deleterious(0.01) possibly_damaging(0.609) TCGA-JY-A93F-01 8 90949256 90949256 A - NBN Frame_Shift_Del p.F744Lfs*7 0.15 TCGA-JY-A93F-01 9 101912644 101912644 A C TGFBR1 3'UTR 0.32 TCGA-JY-A93F-01 9 107543308 107543308 C T ABCA1 3'UTR 0.28 TCGA-JY-A93F-01 9 135763819 135763819 C T C9orf9 Nonsense_Mutation p.Q164* 0.25 TCGA-JY-A93F-01 9 71155464 71155464 G A TMEM252 Silent p.A89A 0.32 TCGA-JY-A93F-01 9 79120659 79120659 A T GCNT1 3'UTR 0.44 TCGA-JY-A93F-01 X 107976167 107976167 C T IRS4 Silent p.A1136A 0.25 TCGA-JY-A93F-01 X 117031945 117031945 G T KLHL13 3'UTR 0.42 TCGA-JY-A93F-01 X 123505580 123505581 - T SH2D1A 3'UTR 0.19 TCGA-JY-A93F-01 X 135128288 135128289 - T SLC9A6 3'UTR 0.38 TCGA-JY-A93F-01 X 137714268 137714268 G T FGF13 3'Flank 0.32 TCGA-JY-A93F-01 X 140993740 140993740 G T MAGEC1 Nonsense_Mutation p.E184* 0.23 TCGA-JY-A93F-01 X 144907271 144907271 A G SLITRK2 3'UTR 0.34 TCGA-JY-A93F-01 X 152967491 152967491 G A BCAP31 Missense_Mutation p.R292C 0.33 deleterious(0) probably_damaging(0.996) TCGA-JY-A93F-01 X 153295833 153295833 G A MECP2 Silent p.T494T 0.34 TCGA-JY-A93F-01 X 46434207 46434207 A C CHST7 Silent p.R281R 0.22 TCGA-JY-A93F-01 X 63405112 63405112 G A AMER1 3'UTR 0.51 TCGA-JY-A93F-01 X 73524760 73524760 A - ZCCHC13 3'UTR 0.40 TCGA-JY-A93F-01 X 73960195 73960195 G T KIAA2022 Missense_Mutation p.S1399R 0.35 deleterious(0.02) benign(0.299) TCGA-KH-A6WC-01 11 1010963 1010963 G A AP2A2 3'UTR 0.05 TCGA-KH-A6WC-01 11 1010964 1010964 C T AP2A2 3'UTR 0.05 TCGA-KH-A6WC-01 11 22399084 22399084 G T SLC17A6 Missense_Mutation p.C516F 0.12 deleterious(0.03) benign(0.197) TCGA-KH-A6WC-01 12 49427264 49427264 G A KMT2D Nonsense_Mutation p.Q3742* 0.16 TCGA-KH-A6WC-01 14 24626751 24626751 G A RNF31 Silent p.S877S 0.08 TCGA-KH-A6WC-01 15 100272100 100272100 C T LYSMD4 Missense_Mutation p.R6Q 0.05 tolerated_low_confidence(0.21) benign(0.002) TCGA-KH-A6WC-01 17 47128344 47128344 G A IGF2BP1 3'UTR 0.05 TCGA-KH-A6WC-01 18 42643239 42643239 G A SETBP1 Missense_Mutation p.R1456H 0.18 deleterious(0) probably_damaging(0.996) TCGA-KH-A6WC-01 18 77920429 77920429 G T AC139100.2 Missense_Mutation p.G43C 0.14 probably_damaging(0.992) TCGA-KH-A6WC-01 19 847929 847929 G T PRTN3 Missense_Mutation p.R244L 0.11 deleterious(0.01) benign(0.011) TCGA-KH-A6WC-01 1 12061834 12061834 C G MFN2 Missense_Mutation p.L327V 0.08 tolerated(0.05) possibly_damaging(0.721) TCGA-KH-A6WC-01 1 205033529 205033529 C T CNTN2 Silent p.C440C 0.08 TCGA-KH-A6WC-01 20 31022346 31022346 G A ASXL1 Missense_Mutation p.A611T 0.05 deleterious(0.05) benign(0.017) TCGA-KH-A6WC-01 3 124729390 124729390 C G HEG1 Missense_Mutation p.C989S 0.14 deleterious(0.01) probably_damaging(1) TCGA-KH-A6WC-01 4 48525101 48525101 G T FRYL Missense_Mutation p.F2446L 0.25 deleterious(0) benign(0.129) TCGA-KH-A6WC-01 5 126206168 126206168 C T MARCH3 3'UTR 0.13 TCGA-KH-A6WC-01 5 140580114 140580114 T C PCDHB11 Missense_Mutation p.I256T 0.08 deleterious_low_confidence(0.02) benign(0.005) TCGA-KH-A6WC-01 5 176721258 176721258 A G NSD1 Missense_Mutation p.R2297G 0.10 deleterious_low_confidence(0.01) benign(0.357) TCGA-KH-A6WC-01 6 31802728 31802728 A C C6orf48 5'UTR 0.15 TCGA-KH-A6WC-01 6 44122676 44122676 G C TMEM63B 3'UTR 0.19 TCGA-KH-A6WC-01 6 6174842 6174842 G A F13A1 Missense_Mutation p.T573M 0.14 deleterious(0.01) benign(0.414) TCGA-KH-A6WC-01 6 7246768 7246768 G T RREB1 Missense_Mutation p.G1362V 0.12 tolerated(0.14) benign(0.047) TCGA-KH-A6WC-01 7 127999678 127999678 C T PRRT4 Missense_Mutation p.R123Q 0.10 tolerated_low_confidence(0.12) unknown(0) TCGA-KH-A6WC-01 7 132412309 132412309 T C AC009365.3 Missense_Mutation p.L54P 0.10 deleterious_low_confidence(0) benign(0) TCGA-KH-A6WC-01 9 139397632 139397632 A G NOTCH1 Splice_Site p.X1723_splice 0.12 TCGA-KH-A6WC-01 9 140473264 140473264 G C DPH7 5'UTR 0.08 TCGA-KH-A6WC-01 X 69722994 69722994 C T DLG3 3'UTR 0.29 TCGA-KH-A6WC-01 X 71349976 71349976 G C RGAG4 Missense_Mutation p.P472R 0.12 deleterious_low_confidence(0) unknown(0) TCGA-KH-A6WC-01 X 99887533 99887533 C G TSPAN6 Missense_Mutation p.E206D 0.06 tolerated(0.08) benign(0.021) TCGA-L5-A43C-01 10 105178266 105178266 C T PDCD11 Missense_Mutation p.R661C 0.18 tolerated(0.08) benign(0.003) TCGA-L5-A43C-01 10 114207157 114207157 A G VTI1A Missense_Mutation p.E9G 0.34 deleterious(0) possibly_damaging(0.783) TCGA-L5-A43C-01 10 127782586 127782586 C A ADAM12 Missense_Mutation p.E374D 0.13 tolerated(1) benign(0.002) TCGA-L5-A43C-01 10 135369520 135369520 G A SYCE1 Missense_Mutation p.A187V 0.04 tolerated(0.13) benign(0.094) TCGA-L5-A43C-01 10 13542011 13542011 C T BEND7 Missense_Mutation p.R20Q 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A43C-01 10 20105741 20105741 G A PLXDC2 5'UTR 0.12 TCGA-L5-A43C-01 10 25890514 25890514 C T GPR158 3'UTR 0.19 TCGA-L5-A43C-01 10 27687303 27687303 T C PTCHD3 Missense_Mutation p.N742D 0.07 tolerated(0.32) benign(0.018) TCGA-L5-A43C-01 10 55581853 55581853 T C PCDH15 Missense_Mutation p.E1880G 0.04 deleterious_low_confidence(0) unknown(0) TCGA-L5-A43C-01 10 85991794 85991794 C A LRIT1 Silent p.L587L 0.15 TCGA-L5-A43C-01 10 96033382 96033382 A G PLCE1 Missense_Mutation p.M1524V 0.23 tolerated(0.09) possibly_damaging(0.688) TCGA-L5-A43C-01 11 117066610 117066610 C T SIDT2 Silent p.I805I 0.08 TCGA-L5-A43C-01 11 31327826 31327826 C A DCDC1 Nonsense_Mutation p.G182* 0.24 TCGA-L5-A43C-01 11 47869783 47869783 C T NUP160 Missense_Mutation p.V64I 0.13 tolerated(0.4) benign(0.006) TCGA-L5-A43C-01 11 5411391 5411391 G A OR51M1 Missense_Mutation p.A255T 0.18 deleterious(0) benign(0.084) TCGA-L5-A43C-01 11 55110731 55110731 C A OR4A16 Missense_Mutation p.P19T 0.07 deleterious_low_confidence(0.02) possibly_damaging(0.852) TCGA-L5-A43C-01 11 60152619 60152619 C A MS4A7 Missense_Mutation p.A69D 0.06 deleterious(0) probably_damaging(0.945) TCGA-L5-A43C-01 11 63487933 63487933 C A RTN3 Missense_Mutation p.D653E 0.10 deleterious(0) probably_damaging(0.955) TCGA-L5-A43C-01 11 65402568 65402568 C T PCNXL3 Missense_Mutation p.R1644C 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A43C-01 11 66283014 66283014 C T BBS1 Nonsense_Mutation p.R146* 0.18 TCGA-L5-A43C-01 12 118293271 118293271 T C KSR2 Missense_Mutation p.N145S 0.16 tolerated(0.32) benign(0.096) TCGA-L5-A43C-01 12 52307360 52307360 G A ACVRL1 Missense_Mutation p.E111K 0.17 tolerated(0.57) benign(0.003) TCGA-L5-A43C-01 12 53685797 53685797 G A ESPL1 Missense_Mutation p.M1907I 0.09 tolerated(0.59) benign(0.006) TCGA-L5-A43C-01 12 56436329 56436329 C T RPS26 Nonsense_Mutation p.R42* 0.09 TCGA-L5-A43C-01 12 57978394 57978394 G A KIF5A 3'UTR 0.50 TCGA-L5-A43C-01 12 63963122 63963122 T C DPY19L2 Missense_Mutation p.T670A 0.09 deleterious(0) probably_damaging(0.992) TCGA-L5-A43C-01 12 6457259 6457259 C T SCNN1A Missense_Mutation p.R656Q 0.10 tolerated(0.07) benign(0.104) TCGA-L5-A43C-01 12 7869565 7869565 G A DPPA3 Silent p.K124K 0.11 TCGA-L5-A43C-01 12 97038038 97038038 A G C12orf55 Missense_Mutation p.R1467G 0.18 deleterious(0) benign(0.36) TCGA-L5-A43C-01 13 113714953 113714953 C T MCF2L Missense_Mutation p.T139M 0.15 deleterious(0) possibly_damaging(0.765) TCGA-L5-A43C-01 13 37016845 37016845 G C CCNA1 3'UTR 0.18 TCGA-L5-A43C-01 13 58207464 58207464 G A PCDH17 Missense_Mutation p.V262I 0.21 deleterious(0.02) benign(0.06) TCGA-L5-A43C-01 14 21464427 21464427 G A METTL17 Silent p.A352A 0.42 TCGA-L5-A43C-01 14 23885392 23885392 G T MYH7 Silent p.R1592R 0.12 TCGA-L5-A43C-01 15 22709212 22709212 G C AC116165.1 5'Flank 0.20 TCGA-L5-A43C-01 15 40057884 40057884 A G FSIP1 Missense_Mutation p.L125P 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A43C-01 15 40866470 40866470 C T RPUSD2 3'UTR 0.09 TCGA-L5-A43C-01 15 42644972 42644973 - T GANC 3'UTR 0.11 TCGA-L5-A43C-01 15 48712961 48712961 C A FBN1 Missense_Mutation p.C2581F 0.14 probably_damaging(0.999) TCGA-L5-A43C-01 15 52342251 52342251 C T MAPK6 Missense_Mutation p.P206L 0.13 tolerated(0.09) probably_damaging(0.984) TCGA-L5-A43C-01 15 66994865 66994865 T A SMAD6 5'UTR 0.26 TCGA-L5-A43C-01 15 68119146 68119146 G A SKOR1 Intron 0.45 TCGA-L5-A43C-01 16 1416329 1416329 C T UNKL Missense_Mutation p.R652Q 0.13 tolerated(0.81) benign(0.005) TCGA-L5-A43C-01 16 20043988 20043988 T G GPR139 Missense_Mutation p.N44T 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A43C-01 16 2258950 2258950 G C MLST8 3'UTR 0.14 TCGA-L5-A43C-01 16 24192246 24192246 C A PRKCB Silent p.P510P 0.18 TCGA-L5-A43C-01 16 2612137 2612137 C A PDPK1 Intron 0.21 TCGA-L5-A43C-01 16 2998732 2998732 G A FLYWCH1 3'UTR 0.26 TCGA-L5-A43C-01 16 30976498 30976498 A T SETD1A Missense_Mutation p.S479C 0.26 possibly_damaging(0.869) TCGA-L5-A43C-01 16 4412735 4412735 C T CORO7 Missense_Mutation p.G427D 0.35 tolerated(0.13) benign(0.014) TCGA-L5-A43C-01 16 49315306 49315306 T G CBLN1 Missense_Mutation p.E24A 0.12 deleterious_low_confidence(0.01) benign(0.345) TCGA-L5-A43C-01 16 66426223 66426225 AGA - CDH5 In_Frame_Del p.K387del 0.38 TCGA-L5-A43C-01 16 7726800 7726800 G A RBFOX1 Missense_Mutation p.A340T 0.12 tolerated(0.12) possibly_damaging(0.821) TCGA-L5-A43C-01 16 81208261 81208261 G A PKD1L2 Missense_Mutation p.R204W 0.19 deleterious_low_confidence(0.01) benign(0.023) TCGA-L5-A43C-01 16 85743840 85743840 G A C16orf74 Silent p.D34D 0.29 TCGA-L5-A43C-01 17 19568349 19568349 T A ALDH3A2 Missense_Mutation p.F399Y 0.10 deleterious(0.02) possibly_damaging(0.87) TCGA-L5-A43C-01 17 289927 289927 G A FAM101B 3'UTR 0.22 TCGA-L5-A43C-01 17 3493244 3493244 C T SHPK Missense_Mutation p.D301N 0.24 deleterious(0.04) benign(0.435) TCGA-L5-A43C-01 17 37566445 37566445 G A MED1 Missense_Mutation p.R677C 0.21 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-L5-A43C-01 17 38906735 38906735 C T KRT25 Missense_Mutation p.E358K 0.06 deleterious(0.02) benign(0.133) TCGA-L5-A43C-01 17 42635995 42635995 C T FZD2 Silent p.D313D 0.17 TCGA-L5-A43C-01 17 45819977 45819977 C T TBX21 Missense_Mutation p.R165W 0.25 deleterious(0) probably_damaging(0.931) TCGA-L5-A43C-01 17 46138303 46138303 C T NFE2L1 3'UTR 0.25 TCGA-L5-A43C-01 17 49270861 49270861 T G MBTD1 Missense_Mutation p.K461N 0.16 tolerated(0.29) benign(0.02) TCGA-L5-A43C-01 17 7324809 7324809 G A SPEM1 Missense_Mutation p.R272Q 0.24 tolerated(0.08) probably_damaging(0.947) TCGA-L5-A43C-01 17 74732959 74732959 G A SRSF2 Missense_Mutation p.P95L 0.17 tolerated(0.57) possibly_damaging(0.866) TCGA-L5-A43C-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A43C-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.24 tolerated(0.11) benign(0.308) TCGA-L5-A43C-01 18 14808688 14808688 A C ANKRD30B Intron 0.15 TCGA-L5-A43C-01 18 21399944 21399944 C A LAMA3 Missense_Mutation p.Q763K 0.23 benign(0.036) TCGA-L5-A43C-01 18 66564837 66564837 T C CCDC102B Intron 0.24 TCGA-L5-A43C-01 18 7043225 7043225 C T LAMA1 Splice_Site p.X385_splice 0.18 TCGA-L5-A43C-01 19 12969475 12969475 G A MAST1 Missense_Mutation p.E430K 0.12 deleterious(0) possibly_damaging(0.854) TCGA-L5-A43C-01 19 15904866 15904866 G A OR10H5 Missense_Mutation p.G3E 0.06 tolerated(0.63) benign(0.008) TCGA-L5-A43C-01 19 1986098 1986098 G T BTBD2 3'UTR 0.17 TCGA-L5-A43C-01 19 2763650 2763650 C G SGTA Splice_Site p.X166_splice 0.14 TCGA-L5-A43C-01 19 36110964 36110964 C T HAUS5 Missense_Mutation p.A486V 0.12 tolerated(0.09) benign(0.318) TCGA-L5-A43C-01 19 36223304 36223309 ACACCT - KMT2B In_Frame_Del p.P1953_T1954del 0.22 TCGA-L5-A43C-01 19 362277 362277 G A THEG Missense_Mutation p.R355C 0.19 tolerated(0.15) benign(0.387) TCGA-L5-A43C-01 19 36387329 36387329 C T NFKBID Missense_Mutation p.V124M 0.26 tolerated(0.08) possibly_damaging(0.463) TCGA-L5-A43C-01 19 42507533 42507533 G A GRIK5 Missense_Mutation p.A822V 0.25 deleterious(0) possibly_damaging(0.559) TCGA-L5-A43C-01 19 43257451 43257451 G T PSG8 3'Flank 0.20 TCGA-L5-A43C-01 19 44223001 44223001 G A IRGC Silent p.S97S 0.12 TCGA-L5-A43C-01 19 49472248 49472248 C T GYS1 3'UTR 0.17 TCGA-L5-A43C-01 19 50826653 50826653 G A KCNC3 Silent p.V519V 0.26 TCGA-L5-A43C-01 19 50912814 50912814 G A POLD1 Missense_Mutation p.R682Q 0.10 deleterious(0.02) possibly_damaging(0.684) TCGA-L5-A43C-01 19 5131900 5131900 A G KDM4B Silent p.A596A 0.12 TCGA-L5-A43C-01 19 52919182 52919182 C T ZNF528 Silent p.G359G 0.12 TCGA-L5-A43C-01 19 54942051 54942051 C T TTYH1 Nonsense_Mutation p.R334* 0.24 TCGA-L5-A43C-01 19 56104860 56104860 C T FIZ1 Silent p.A149A 0.23 TCGA-L5-A43C-01 19 57175634 57175634 G A ZNF835 Silent p.C311C 0.18 TCGA-L5-A43C-01 19 58945571 58945571 G A ZNF132 Nonsense_Mutation p.R414* 0.23 TCGA-L5-A43C-01 19 621120 621120 G A POLRMT Missense_Mutation p.R860C 0.30 deleterious(0) probably_damaging(0.96) TCGA-L5-A43C-01 19 7794134 7794134 G A CLEC4G 3'UTR 0.15 TCGA-L5-A43C-01 19 8651466 8651466 C A ADAMTS10 Silent p.P793P 0.25 TCGA-L5-A43C-01 19 8922177 8922177 C T ZNF558 Missense_Mutation p.S330N 0.15 tolerated(0.11) possibly_damaging(0.546) TCGA-L5-A43C-01 1 101705712 101705712 G A S1PR1 3'UTR 0.22 TCGA-L5-A43C-01 1 144930990 144930990 G A PDE4DIP Intron 0.12 TCGA-L5-A43C-01 1 152734018 152734018 C T KPRP 3'UTR 0.13 TCGA-L5-A43C-01 1 154408531 154408531 C T IL6R Silent p.F298F 0.11 TCGA-L5-A43C-01 1 1575747 1575747 C G CDK11B Missense_Mutation p.G384A 0.09 unknown(0) TCGA-L5-A43C-01 1 157665905 157665905 C T FCRL3 Missense_Mutation p.A353T 0.36 tolerated(0.07) probably_damaging(0.951) TCGA-L5-A43C-01 1 158576428 158576428 C T OR10Z1 Missense_Mutation p.S67F 0.08 deleterious(0) possibly_damaging(0.657) TCGA-L5-A43C-01 1 158746862 158746862 G T OR6N2 Silent p.A188A 0.19 TCGA-L5-A43C-01 1 160171051 160171051 T A CASQ1 Missense_Mutation p.M359K 0.20 deleterious(0) possibly_damaging(0.88) TCGA-L5-A43C-01 1 167844397 167844397 G A ADCY10 Silent p.C478C 0.12 TCGA-L5-A43C-01 1 173776414 173776414 A T CENPL Missense_Mutation p.F137L 0.24 tolerated(0.26) benign(0.004) TCGA-L5-A43C-01 1 175037009 175037009 C T TNN 5'UTR 0.17 TCGA-L5-A43C-01 1 180081572 180081572 C T CEP350 3'UTR 0.10 TCGA-L5-A43C-01 1 190423854 190423854 C T BRINP3 Missense_Mutation p.R56H 0.09 tolerated(0.58) benign(0.011) TCGA-L5-A43C-01 1 201021764 201021764 T C CACNA1S Missense_Mutation p.I1292V 0.08 tolerated(0.34) benign(0.173) TCGA-L5-A43C-01 1 221507307 221507307 G A RP11-421L10.1 RNA 0.28 TCGA-L5-A43C-01 1 22155399 22155399 C G HSPG2 Missense_Mutation p.G4056R 0.11 probably_damaging(1) TCGA-L5-A43C-01 1 231076236 231076236 G A TTC13 Missense_Mutation p.P247S 0.20 deleterious(0.01) possibly_damaging(0.589) TCGA-L5-A43C-01 1 231076237 231076237 C T TTC13 Silent p.Q246Q 0.19 TCGA-L5-A43C-01 1 231830164 231830164 C T DISC1 Silent p.A220A 0.22 TCGA-L5-A43C-01 1 23189635 23189635 G A EPHB2 Missense_Mutation p.R306H 0.19 tolerated(0.19) benign(0.045) TCGA-L5-A43C-01 1 23687286 23687286 G A ZNF436 3'UTR 0.19 TCGA-L5-A43C-01 1 35228917 35228917 C T GJB4 3'UTR 0.16 TCGA-L5-A43C-01 1 52889447 52889447 G A ZCCHC11 3'UTR 0.19 TCGA-L5-A43C-01 1 67390656 67390656 C T MIER1 5'UTR 0.21 TCGA-L5-A43C-01 1 95303388 95303388 G A SLC44A3 Missense_Mutation p.G211R 0.10 deleterious(0.05) benign(0.049) TCGA-L5-A43C-01 20 36841848 36841848 G A KIAA1755 Missense_Mutation p.R1067C 0.20 tolerated(0.17) benign(0.001) TCGA-L5-A43C-01 20 42695425 42695425 C T TOX2 Missense_Mutation p.P471L 0.22 tolerated(0.08) possibly_damaging(0.518) TCGA-L5-A43C-01 20 865893 865893 C T ANGPT4 Silent p.A221A 0.21 TCGA-L5-A43C-01 22 46653522 46653522 C A PKDREJ Nonsense_Mutation p.E1900* 0.09 TCGA-L5-A43C-01 2 101634457 101634457 G A RPL31 Intron 0.28 TCGA-L5-A43C-01 2 107084742 107084742 C A RGPD3 Translation_Start_Site p.M1? 0.06 deleterious(0) possibly_damaging(0.599) TCGA-L5-A43C-01 2 114335612 114335612 G A FAM138B RNA 0.16 TCGA-L5-A43C-01 2 122104699 122104699 T G CLASP1 Missense_Mutation p.K1482T 0.10 deleterious(0) probably_damaging(0.998) TCGA-L5-A43C-01 2 1652754 1652754 C T PXDN Missense_Mutation p.R933H 0.19 tolerated(0.08) benign(0.168) TCGA-L5-A43C-01 2 190922360 190922360 G T MSTN Missense_Mutation p.P251Q 0.14 deleterious(0) probably_damaging(0.994) TCGA-L5-A43C-01 2 197080605 197080605 T - HECW2 Frame_Shift_Del p.I1531Sfs*30 0.16 TCGA-L5-A43C-01 2 207988664 207988664 C T KLF7 Silent p.T189T 0.20 TCGA-L5-A43C-01 2 212288964 212288964 C A ERBB4 Nonsense_Mutation p.E928* 0.06 TCGA-L5-A43C-01 2 219603750 219603750 G A TTLL4 Missense_Mutation p.A451T 0.08 tolerated(0.75) benign(0.001) TCGA-L5-A43C-01 2 220432177 220432177 C T OBSL1 Missense_Mutation p.R552Q 0.15 deleterious(0.03) possibly_damaging(0.892) TCGA-L5-A43C-01 2 238275737 238275737 G A COL6A3 Missense_Mutation p.T1698I 0.16 probably_damaging(0.962) TCGA-L5-A43C-01 2 238289897 238289897 C T COL6A3 Missense_Mutation p.G520S 0.12 probably_damaging(0.972) TCGA-L5-A43C-01 2 25462040 25462040 G A DNMT3A Silent p.H789H 0.20 TCGA-L5-A43C-01 2 3358353 3358353 C A TSSC1 Missense_Mutation p.V32F 0.24 deleterious(0) possibly_damaging(0.775) TCGA-L5-A43C-01 2 45807093 45807093 G T SRBD1 Silent p.G331G 0.13 TCGA-L5-A43C-01 2 56420101 56420101 C T CCDC85A Missense_Mutation p.P256S 0.19 tolerated_low_confidence(0.29) probably_damaging(0.998) TCGA-L5-A43C-01 2 96689748 96689748 G A GPAT2 Missense_Mutation p.P607S 0.20 deleterious(0) possibly_damaging(0.803) TCGA-L5-A43C-01 2 97847489 97847489 A G ANKRD36 Missense_Mutation p.N599S 0.11 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-L5-A43C-01 3 10255052 10255052 C T IRAK2 Silent p.H230H 0.18 TCGA-L5-A43C-01 3 173996722 173996722 A C NLGN1 Missense_Mutation p.K311Q 0.24 tolerated(0.13) possibly_damaging(0.901) TCGA-L5-A43C-01 3 21478515 21478515 G A ZNF385D Missense_Mutation p.S207L 0.12 tolerated(0.05) probably_damaging(0.968) TCGA-L5-A43C-01 3 48473774 48473775 - T CCDC51 3'UTR 0.22 TCGA-L5-A43C-01 3 51352528 51352528 G T DOCK3 Missense_Mutation p.W1124L 0.18 deleterious(0.03) benign(0.018) TCGA-L5-A43C-01 3 51863720 51863720 C T IQCF3 Missense_Mutation p.R20W 0.20 deleterious(0.02) benign(0.002) TCGA-L5-A43C-01 4 158285874 158285874 A T GRIA2 3'UTR 0.15 TCGA-L5-A43C-01 4 184431438 184431438 C T ING2 Missense_Mutation p.T59M 0.18 tolerated(0.07) benign(0.24) TCGA-L5-A43C-01 4 186068293 186068293 C T SLC25A4 3'UTR 0.35 TCGA-L5-A43C-01 4 3446081 3446081 C T HGFAC Silent p.G214G 0.21 TCGA-L5-A43C-01 4 42445670 42445670 C T ATP8A1 Nonsense_Mutation p.W1012* 0.15 TCGA-L5-A43C-01 4 88035615 88035615 C T AFF1 Missense_Mutation p.P544S 0.38 tolerated(0.97) unknown(0) TCGA-L5-A43C-01 5 134785568 134785568 G A TIFAB Missense_Mutation p.A21V 0.22 tolerated(0.14) benign(0.006) TCGA-L5-A43C-01 5 140220914 140220914 A G PCDHA8 Missense_Mutation p.Y3C 0.13 deleterious_low_confidence(0) benign(0.003) TCGA-L5-A43C-01 5 140229147 140229147 C T PCDHA9 Missense_Mutation p.S356L 0.22 deleterious_low_confidence(0.04) possibly_damaging(0.496) TCGA-L5-A43C-01 5 140255185 140255185 C T PCDHA12 Missense_Mutation p.T43I 0.12 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-L5-A43C-01 5 147863838 147863838 C T HTR4 Missense_Mutation p.R394K 0.13 tolerated_low_confidence(0.35) benign(0) TCGA-L5-A43C-01 5 153674404 153674404 T G GALNT10 Missense_Mutation p.F63C 0.09 tolerated(0.12) benign(0.125) TCGA-L5-A43C-01 5 161292738 161292738 G A GABRA1 Missense_Mutation p.E67K 0.29 tolerated(0.15) benign(0.002) TCGA-L5-A43C-01 5 480003 480003 A G SLC9A3 Missense_Mutation p.L532P 0.16 deleterious(0) possibly_damaging(0.824) TCGA-L5-A43C-01 5 5318251 5318251 C T ADAMTS16 Missense_Mutation p.T1139M 0.14 deleterious(0) probably_damaging(0.973) TCGA-L5-A43C-01 5 71015223 71015223 C T CARTPT Missense_Mutation p.P35S 0.09 tolerated(0.76) probably_damaging(0.968) TCGA-L5-A43C-01 5 71403400 71403400 C T MAP1B Silent p.S14S 0.19 TCGA-L5-A43C-01 5 79025231 79025231 T C CMYA5 Silent p.L215L 0.20 TCGA-L5-A43C-01 5 79747495 79747495 C T ZFYVE16 Missense_Mutation p.R1192C 0.07 deleterious(0) probably_damaging(1) TCGA-L5-A43C-01 5 82837981 82837981 T C VCAN Silent p.T3053T 0.16 TCGA-L5-A43C-01 6 102376297 102376297 G A GRIK2 Silent p.E625E 0.12 TCGA-L5-A43C-01 6 13470588 13470588 G T AL583828.1 5'UTR 0.14 TCGA-L5-A43C-01 6 15513155 15513155 C T JARID2 Missense_Mutation p.R1049C 0.19 tolerated(0.12) benign(0.003) TCGA-L5-A43C-01 6 159653956 159653956 G A FNDC1 Silent p.T804T 0.24 TCGA-L5-A43C-01 6 32522718 32522718 T C RNU1-61P 5'Flank 0.13 TCGA-L5-A43C-01 6 56029249 56029249 G A COL21A1 Missense_Mutation p.P448L 0.13 deleterious(0.05) benign(0.177) TCGA-L5-A43C-01 7 130007803 130007803 C A CPA5 Nonsense_Mutation p.Y365* 0.26 TCGA-L5-A43C-01 7 140301551 140301551 C T DENND2A Missense_Mutation p.R216K 0.14 tolerated(0.44) benign(0.005) TCGA-L5-A43C-01 7 151884535 151884536 - TT KMT2C Frame_Shift_Ins p.M1607Kfs*59 0.23 TCGA-L5-A43C-01 7 155532430 155532430 C A RBM33 Missense_Mutation p.P587T 0.16 tolerated_low_confidence(0.14) unknown(0) TCGA-L5-A43C-01 7 19739848 19739848 A T TWISTNB Missense_Mutation p.F151Y 0.07 deleterious(0) probably_damaging(0.998) TCGA-L5-A43C-01 7 32961042 32961042 C T RP9P Intron 0.18 TCGA-L5-A43C-01 7 35289796 35289796 C T TBX20 Silent p.S49S 0.10 TCGA-L5-A43C-01 7 37264526 37264526 G A ELMO1 Missense_Mutation p.A220V 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A43C-01 7 4051852 4051852 G A SDK1 Missense_Mutation p.R802H 0.14 tolerated(0.29) benign(0.009) TCGA-L5-A43C-01 7 45753493 45753493 C - ADCY1 Frame_Shift_Del p.V1089Cfs*50 0.16 TCGA-L5-A43C-01 7 96318223 96318225 CTT - SHFM1 3'UTR 0.10 TCGA-L5-A43C-01 7 96746963 96746963 A T ACN9 5'UTR 0.28 TCGA-L5-A43C-01 8 105235993 105235993 C T RIMS2 Intron 0.17 TCGA-L5-A43C-01 8 105496666 105496666 T G LRP12 3'Flank 0.12 TCGA-L5-A43C-01 8 133984967 133984967 C T TG Silent p.F2060F 0.15 TCGA-L5-A43C-01 8 17427865 17427865 C A SLC7A2 3'UTR 0.23 TCGA-L5-A43C-01 8 19701701 19701701 T A INTS10 Missense_Mutation p.C612S 0.18 tolerated(0.35) benign(0.001) TCGA-L5-A43C-01 8 24181395 24181395 T C ADAM28 Missense_Mutation p.W257R 0.19 deleterious(0) probably_damaging(1) TCGA-L5-A43C-01 8 53852892 53852892 C T NPBWR1 Missense_Mutation p.A142V 0.16 tolerated(1) benign(0.041) TCGA-L5-A43C-01 8 70501314 70501314 C T SULF1 Silent p.P224P 0.17 TCGA-L5-A43C-01 8 99441744 99441744 C A KCNS2 3'UTR 0.18 TCGA-L5-A43C-01 9 100745866 100745866 A G ANP32B Missense_Mutation p.E10G 0.05 deleterious(0) benign(0.231) TCGA-L5-A43C-01 9 100778081 100778081 A T ANP32B 3'UTR 0.11 TCGA-L5-A43C-01 9 141000233 141000233 C T CACNA1B Missense_Mutation p.T1801M 0.14 deleterious(0) probably_damaging(0.931) TCGA-L5-A43C-01 9 22452033 22452033 A G DMRTA1 3'UTR 0.17 TCGA-L5-A43C-01 9 428369 428369 C T DOCK8 Missense_Mutation p.S1449L 0.31 tolerated(0.75) benign(0.005) TCGA-L5-A43C-01 9 91930118 91930118 A G CKS2 Silent p.Q31Q 0.13 TCGA-L5-A43C-01 X 138856967 138856967 G A ATP11C Silent p.L703L 0.33 TCGA-L5-A43C-01 X 142605168 142605168 C T SPANXN3 Missense_Mutation p.E18K 0.44 tolerated(0.08) benign(0.01) TCGA-L5-A43C-01 X 151815540 151815540 G A GABRQ Silent p.L146L 0.23 TCGA-L5-A43C-01 X 83352797 83352797 A C RPS6KA6 Missense_Mutation p.F612L 0.23 tolerated(1) benign(0.001) TCGA-L5-A43C-01 X 83480784 83480784 G A MIR548I4 RNA 0.41 TCGA-L5-A43C-01 X 85158642 85158642 A G CHM Intron 0.32 TCGA-L5-A43C-01 X 88009785 88009785 A G CPXCR1 3'UTR 0.44 TCGA-L5-A43C-01 X 91134272 91134272 G A PCDH11X Silent p.P1011P 0.36 TCGA-L5-A43E-01 10 113921486 113921486 T A GPAM Missense_Mutation p.K478M 0.32 deleterious(0.01) possibly_damaging(0.789) TCGA-L5-A43E-01 10 118893682 118893682 A C VAX1 Missense_Mutation p.L281R 0.37 deleterious(0.02) probably_damaging(0.986) TCGA-L5-A43E-01 10 133954069 133954069 G A JAKMIP3 Missense_Mutation p.D487N 0.23 deleterious(0) possibly_damaging(0.481) TCGA-L5-A43E-01 10 24909458 24909458 G A ARHGAP21 Missense_Mutation p.R456C 0.10 deleterious(0) probably_damaging(0.99) TCGA-L5-A43E-01 10 25888059 25888059 A T GPR158 Silent p.R1168R 0.33 TCGA-L5-A43E-01 10 25888066 25888066 G A GPR158 Missense_Mutation p.V1171I 0.33 tolerated(0.45) benign(0.11) TCGA-L5-A43E-01 10 29776292 29776292 C T SVIL Intron 0.35 TCGA-L5-A43E-01 10 43619215 43619215 C T RET Silent p.T966T 0.29 TCGA-L5-A43E-01 10 55591078 55591078 C T PCDH15 Missense_Mutation p.R1400K 0.40 tolerated(0.54) benign(0.241) TCGA-L5-A43E-01 10 78880764 78880764 T C KCNMA1 Missense_Mutation p.E284G 0.43 deleterious(0.02) benign(0.174) TCGA-L5-A43E-01 10 87484373 87484373 A C GRID1 Missense_Mutation p.F532V 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 11 103780163 103780163 T G PDGFD 3'UTR 0.40 TCGA-L5-A43E-01 11 110035171 110035171 C T ZC3H12C Missense_Mutation p.T454M 0.38 deleterious(0) possibly_damaging(0.891) TCGA-L5-A43E-01 11 118764738 118764738 G A CXCR5 Missense_Mutation p.R162H 0.76 deleterious(0) probably_damaging(0.998) TCGA-L5-A43E-01 11 123901093 123901093 T A OR10G8 Missense_Mutation p.L255H 0.44 deleterious(0) possibly_damaging(0.886) TCGA-L5-A43E-01 11 5080148 5080148 T G OR52E2 Missense_Mutation p.K237T 0.47 deleterious(0.01) probably_damaging(0.945) TCGA-L5-A43E-01 11 56086621 56086621 T C OR8K3 Missense_Mutation p.V280A 0.32 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-L5-A43E-01 11 5878173 5878173 A C OR52E8 Missense_Mutation p.L254V 0.27 deleterious(0.02) benign(0.247) TCGA-L5-A43E-01 11 6291950 6291950 G A CCKBR Missense_Mutation p.R243H 0.45 tolerated(0.13) possibly_damaging(0.581) TCGA-L5-A43E-01 11 67171658 67171658 G A TBC1D10C Intron 0.22 TCGA-L5-A43E-01 11 6953724 6953724 T G ZNF215 Missense_Mutation p.L74R 0.26 tolerated(0.05) probably_damaging(0.922) TCGA-L5-A43E-01 11 89165982 89165982 A G NOX4 Missense_Mutation p.L173P 0.20 deleterious(0) probably_damaging(0.999) TCGA-L5-A43E-01 11 89450731 89450731 A T TRIM77 Missense_Mutation p.K348N 0.23 tolerated(0.13) benign(0.19) TCGA-L5-A43E-01 12 119968722 119968722 T C CCDC60 Missense_Mutation p.F469L 0.54 tolerated(0.53) possibly_damaging(0.641) TCGA-L5-A43E-01 12 124341688 124341688 C T DNAH10 Missense_Mutation p.S2057L 0.84 benign(0.279) TCGA-L5-A43E-01 12 21627775 21627775 T C RECQL Missense_Mutation p.K452R 0.81 tolerated(1) benign(0.001) TCGA-L5-A43E-01 12 44166789 44166789 G T IRAK4 Missense_Mutation p.G189C 0.42 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 12 44166790 44166790 G T IRAK4 Missense_Mutation p.G189V 0.42 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 12 49426583 49426583 G A KMT2D Nonsense_Mutation p.Q3969* 0.31 TCGA-L5-A43E-01 12 49433280 49433280 C T KMT2D Missense_Mutation p.E2723K 0.33 probably_damaging(0.991) TCGA-L5-A43E-01 13 101890257 101890257 A C NALCN Missense_Mutation p.L428R 0.47 deleterious(0) probably_damaging(0.996) TCGA-L5-A43E-01 13 19997247 19997247 A C TPTE2 Missense_Mutation p.I508M 0.54 tolerated(0.06) benign(0.147) TCGA-L5-A43E-01 13 23904431 23904431 A C SACS Silent p.A4528A 0.29 TCGA-L5-A43E-01 13 29601027 29601027 A G MTUS2 Missense_Mutation p.K741R 0.44 deleterious(0) possibly_damaging(0.898) TCGA-L5-A43E-01 13 35733224 35733224 C T NBEA Silent p.N972N 0.43 TCGA-L5-A43E-01 13 53608501 53608501 G A OLFM4 Missense_Mutation p.G75S 0.45 tolerated(0.07) probably_damaging(0.989) TCGA-L5-A43E-01 13 78492695 78492695 G A EDNRB Missense_Mutation p.P95L 0.41 tolerated_low_confidence(0.28) benign(0.009) TCGA-L5-A43E-01 13 86369205 86369206 - A SLITRK6 Frame_Shift_Ins p.S480Ffs*7 0.09 TCGA-L5-A43E-01 13 93879591 93879591 G A GPC6 5'UTR 0.40 TCGA-L5-A43E-01 13 98652808 98652808 C A IPO5 Silent p.G357G 0.14 TCGA-L5-A43E-01 14 106691767 106691767 C T IGHV3-21 Missense_Mutation p.R86Q 0.30 deleterious_low_confidence(0.01) benign(0.32) TCGA-L5-A43E-01 14 30046521 30046521 T G PRKD1 Missense_Mutation p.S888R 0.44 tolerated_low_confidence(0.53) benign(0.001) TCGA-L5-A43E-01 14 33202151 33202151 A T AKAP6 Intron 0.38 TCGA-L5-A43E-01 14 45645573 45645573 C T FANCM Nonsense_Mutation p.Q1206* 0.30 TCGA-L5-A43E-01 14 61112955 61112955 T C SIX1 3'UTR 0.26 TCGA-L5-A43E-01 14 80668937 80668937 A C DIO2 3'Flank 0.23 TCGA-L5-A43E-01 14 90650580 90650580 G A KCNK13 Missense_Mutation p.A154T 0.21 deleterious(0.04) benign(0.108) TCGA-L5-A43E-01 14 96389361 96389361 C T LINC00617 RNA 0.67 TCGA-L5-A43E-01 15 25315598 25315599 - A SNORD116-8 RNA 0.16 TCGA-L5-A43E-01 15 25453130 25453130 A C SNORD115-22 5'Flank 0.61 TCGA-L5-A43E-01 15 78825722 78825722 A G HYKK Missense_Mutation p.K278E 0.54 tolerated(0.24) benign(0.013) TCGA-L5-A43E-01 16 20448478 20448478 C T ACSM5 Silent p.N471N 0.25 TCGA-L5-A43E-01 16 21995841 21995841 G C PDZD9 Missense_Mutation p.S121C 0.24 deleterious(0.01) probably_damaging(1) TCGA-L5-A43E-01 16 4029174 4029174 C T ADCY9 Silent p.S874S 0.39 TCGA-L5-A43E-01 16 70010715 70010715 T G PDXDC2P Intron 0.17 TCGA-L5-A43E-01 16 76482821 76482821 A G CNTNAP4 Silent p.E275E 0.21 TCGA-L5-A43E-01 17 10362574 10362574 G A MYH4 Silent p.I527I 0.12 TCGA-L5-A43E-01 17 11593365 11593365 T C DNAH9 Missense_Mutation p.L1409P 0.32 probably_damaging(0.998) TCGA-L5-A43E-01 17 42274607 42274607 G T ATXN7L3 Silent p.I115I 0.69 TCGA-L5-A43E-01 17 68131732 68131732 C A KCNJ16 3'UTR 0.77 TCGA-L5-A43E-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.71 tolerated(0.13) possibly_damaging(0.631) TCGA-L5-A43E-01 17 8049732 8049732 C T PER1 Missense_Mutation p.D666N 0.25 tolerated(0.09) probably_damaging(0.97) TCGA-L5-A43E-01 18 14851759 14851759 A G ANKRD30B Silent p.A1153A 0.30 TCGA-L5-A43E-01 18 18981267 18981267 G A GREB1L Missense_Mutation p.G230E 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 18 31318661 31318661 A T ASXL3 Missense_Mutation p.K431N 0.21 possibly_damaging(0.697) TCGA-L5-A43E-01 18 50451636 50451636 A C DCC Missense_Mutation p.N294T 0.26 tolerated(0.24) benign(0.306) TCGA-L5-A43E-01 18 70417823 70417823 T C NETO1 Missense_Mutation p.T339A 0.32 tolerated(0.08) benign(0.115) TCGA-L5-A43E-01 19 12089188 12089188 A C ZNF763 Missense_Mutation p.K153T 0.38 deleterious(0.01) benign(0.052) TCGA-L5-A43E-01 19 12775735 12775735 G A MAN2B1 Silent p.A167A 0.50 TCGA-L5-A43E-01 19 17412301 17412301 C T ABHD8 Missense_Mutation p.R42H 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A43E-01 19 20215065 20215065 A G ZNF90 Silent p.R7R 0.36 TCGA-L5-A43E-01 19 22154774 22154774 T G ZNF208 Missense_Mutation p.K1021T 0.39 deleterious(0.03) benign(0.028) TCGA-L5-A43E-01 19 22157548 22157548 T C ZNF208 Silent p.Q96Q 0.41 TCGA-L5-A43E-01 19 23927261 23927261 T C ZNF681 Missense_Mutation p.K364R 0.29 deleterious(0.02) possibly_damaging(0.498) TCGA-L5-A43E-01 19 31766695 31766695 A C TSHZ3 3'UTR 0.27 TCGA-L5-A43E-01 19 36051293 36051293 G A ATP4A Silent p.I253I 0.28 TCGA-L5-A43E-01 19 37130776 37130776 T C ZNF461 Silent p.Q157Q 0.21 TCGA-L5-A43E-01 19 37441118 37441118 A C ZNF568 Missense_Mutation p.I355L 0.36 deleterious(0.01) probably_damaging(0.994) TCGA-L5-A43E-01 19 3784173 3784173 G A MATK Missense_Mutation p.A105V 0.20 tolerated(0.44) benign(0.04) TCGA-L5-A43E-01 19 51217187 51217187 C T SHANK1 Silent p.A220A 0.20 TCGA-L5-A43E-01 19 52887189 52887189 T A ZNF880 Missense_Mutation p.L119Q 0.31 deleterious(0.02) benign(0.04) TCGA-L5-A43E-01 19 53087039 53087039 T C ZNF701 3'UTR 0.25 TCGA-L5-A43E-01 19 54299127 54299127 T G NLRP12 Missense_Mutation p.K1028N 0.26 tolerated(0.07) unknown(0) TCGA-L5-A43E-01 19 5561229 5561229 G T TINCR RNA 0.38 TCGA-L5-A43E-01 19 57326782 57326782 A C PEG3 Missense_Mutation p.L1010V 0.18 tolerated(0.21) benign(0.115) TCGA-L5-A43E-01 19 58446630 58446630 T C ZNF418 5'UTR 0.31 TCGA-L5-A43E-01 19 613434 613434 G A HCN2 Missense_Mutation p.V591M 0.50 deleterious(0) possibly_damaging(0.876) TCGA-L5-A43E-01 19 757291 757291 C T MISP Silent p.D115D 0.20 TCGA-L5-A43E-01 19 828364 828364 G A AZU1 Missense_Mutation p.A65T 0.40 deleterious(0.01) possibly_damaging(0.633) TCGA-L5-A43E-01 1 10035719 10035719 C T NMNAT1 Missense_Mutation p.P62L 0.65 tolerated(0.16) benign(0.309) TCGA-L5-A43E-01 1 10439193 10439193 G T KIF1B 3'Flank 0.67 TCGA-L5-A43E-01 1 158637785 158637785 T G SPTA1 Missense_Mutation p.K634T 0.37 deleterious(0.03) benign(0.201) TCGA-L5-A43E-01 1 159176205 159176205 T C DARC Missense_Mutation p.S328P 0.33 tolerated(0.24) probably_damaging(0.977) TCGA-L5-A43E-01 1 175299237 175299237 G A TNR Missense_Mutation p.R1256C 0.76 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 1 182026736 182026736 T C ZNF648 Missense_Mutation p.Q137R 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-L5-A43E-01 1 182569078 182569078 T C RGS16 3'UTR 0.29 TCGA-L5-A43E-01 1 186099193 186099193 G A HMCN1 Missense_Mutation p.V4334I 0.12 benign(0.009) TCGA-L5-A43E-01 1 20637169 20637169 C T VWA5B1 Silent p.S25S 0.48 TCGA-L5-A43E-01 1 208390629 208390629 G A PLXNA2 Silent p.L213L 0.52 TCGA-L5-A43E-01 1 216270459 216270459 T G USH2A Missense_Mutation p.K1575T 0.28 possibly_damaging(0.904) TCGA-L5-A43E-01 1 226340281 226340281 C T ACBD3 Missense_Mutation p.R377Q 0.32 deleterious(0.01) possibly_damaging(0.881) TCGA-L5-A43E-01 1 237886427 237886427 G T RYR2 Splice_Site p.X3519_splice 0.39 TCGA-L5-A43E-01 1 243668490 243668490 T C AKT3 3'UTR 0.44 TCGA-L5-A43E-01 1 247978230 247978230 C A OR14A16 Missense_Mutation p.D268Y 0.17 deleterious(0) probably_damaging(0.934) TCGA-L5-A43E-01 1 34401382 34401382 A C CSMD2 Missense_Mutation p.F191V 0.54 tolerated(0.12) probably_damaging(0.955) TCGA-L5-A43E-01 1 37271783 37271783 C T GRIK3 Missense_Mutation p.V746I 0.08 tolerated(0.79) benign(0.016) TCGA-L5-A43E-01 1 37337907 37337907 C T GRIK3 Missense_Mutation p.R205H 0.22 deleterious(0) probably_damaging(0.999) TCGA-L5-A43E-01 1 38027764 38027764 G A DNALI1 Missense_Mutation p.R242Q 0.44 tolerated(0.18) possibly_damaging(0.795) TCGA-L5-A43E-01 1 53904142 53904142 G A SLC25A3P1 RNA 0.25 TCGA-L5-A43E-01 1 60333961 60333961 G T HOOK1 Missense_Mutation p.A629S 0.42 tolerated(0.23) probably_damaging(0.931) TCGA-L5-A43E-01 1 70486774 70486774 G C LRRC7 Missense_Mutation p.D465H 0.26 deleterious(0.01) benign(0.181) TCGA-L5-A43E-01 1 90180085 90180085 C T LRRC8C Silent p.I652I 0.63 TCGA-L5-A43E-01 20 1456898 1456898 G A SIRPB2 Missense_Mutation p.R315W 0.61 tolerated(0.33) benign(0) TCGA-L5-A43E-01 20 44856189 44856189 C T CDH22 Missense_Mutation p.V210M 0.15 deleterious(0.04) benign(0.061) TCGA-L5-A43E-01 20 60512045 60512045 G A CDH4 3'UTR 0.87 TCGA-L5-A43E-01 20 60902360 60902360 C T LAMA5 Missense_Mutation p.V1681M 0.29 benign(0.008) TCGA-L5-A43E-01 21 30426152 30426152 C G USP16 Silent p.L741L 0.17 TCGA-L5-A43E-01 21 32624335 32624335 C T TIAM1 Silent p.A378A 0.41 TCGA-L5-A43E-01 22 17072055 17072055 G A CCT8L2 Silent p.D462D 0.32 TCGA-L5-A43E-01 22 38823524 38823524 C T KCNJ4 Missense_Mutation p.R205H 0.46 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 22 44258218 44258218 G A SULT4A1 Silent p.F15F 0.24 TCGA-L5-A43E-01 22 50470517 50470517 G A TTLL8 Silent p.N451N 0.11 TCGA-L5-A43E-01 2 108487634 108487634 A C RGPD4 Missense_Mutation p.K1058N 0.46 deleterious(0.01) probably_damaging(0.94) TCGA-L5-A43E-01 2 119731921 119731921 A C MARCO Missense_Mutation p.H158P 0.52 tolerated(0.36) benign(0.361) TCGA-L5-A43E-01 2 124999867 124999867 C T CNTNAP5 Missense_Mutation p.T93M 0.30 deleterious(0) probably_damaging(0.985) TCGA-L5-A43E-01 2 128477433 128477433 C T WDR33 Silent p.P722P 0.62 TCGA-L5-A43E-01 2 141597656 141597656 T G LRP1B Splice_Site p.X1705_splice 0.36 TCGA-L5-A43E-01 2 152684743 152684743 C G ARL5A 5'UTR 0.28 TCGA-L5-A43E-01 2 160194204 160194204 T C BAZ2B Missense_Mutation p.K1845R 0.31 benign(0.165) TCGA-L5-A43E-01 2 169984532 169984532 T C LRP2 3'UTR 0.33 TCGA-L5-A43E-01 2 170072829 170072829 G T LRP2 Missense_Mutation p.H1920Q 0.24 possibly_damaging(0.906) TCGA-L5-A43E-01 2 179460306 179460306 C A TTN Missense_Mutation p.A19259S 0.18 TCGA-L5-A43E-01 2 179500730 179500730 G A TTN Silent p.N13856N 0.22 TCGA-L5-A43E-01 2 179516898 179516898 C A TTN Missense_Mutation p.V13074L 0.20 TCGA-L5-A43E-01 2 179604014 179604014 T A TTN Missense_Mutation p.K4649M 0.41 TCGA-L5-A43E-01 2 180307439 180307439 A T ZNF385B 3'UTR 0.50 TCGA-L5-A43E-01 2 20870289 20870289 G A GDF7 Missense_Mutation p.E153K 0.32 deleterious(0.01) probably_damaging(0.974) TCGA-L5-A43E-01 2 31416160 31416160 C T CAPN14 Nonsense_Mutation p.W317* 0.26 TCGA-L5-A43E-01 2 46414317 46414317 C T PRKCE 3'UTR 0.64 TCGA-L5-A43E-01 2 8890383 8890383 C T KIDINS220 Silent p.A1091A 0.27 TCGA-L5-A43E-01 2 96942904 96942904 G A SNRNP200 Nonsense_Mutation p.Q2003* 0.27 TCGA-L5-A43E-01 3 105295166 105295166 A G ALCAM 3'UTR 0.15 TCGA-L5-A43E-01 3 121137298 121137298 G A STXBP5L Missense_Mutation p.R1138H 0.33 deleterious(0) possibly_damaging(0.833) TCGA-L5-A43E-01 3 124420960 124420960 G A KALRN Missense_Mutation p.G994E 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 3 140419756 140419756 G T TRIM42 Missense_Mutation p.K704N 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-L5-A43E-01 3 147113975 147113975 G A ZIC4 Missense_Mutation p.R168C 0.53 deleterious(0) probably_damaging(0.982) TCGA-L5-A43E-01 3 147133246 147133246 A C ZIC1 3'UTR 0.33 TCGA-L5-A43E-01 3 151012365 151012365 G A GPR87 Silent p.I223I 0.26 TCGA-L5-A43E-01 3 172165868 172165868 G A GHSR Silent p.G112G 0.13 TCGA-L5-A43E-01 3 190573505 190573505 A - GMNC Frame_Shift_Del p.L195* 0.10 TCGA-L5-A43E-01 3 38739688 38739689 - C SCN10A Frame_Shift_Ins p.P1675Afs*5 0.24 TCGA-L5-A43E-01 3 39187974 39187974 A C CSRNP1 Missense_Mutation p.F67C 0.46 deleterious(0.01) possibly_damaging(0.745) TCGA-L5-A43E-01 3 43074800 43074800 C T FAM198A Missense_Mutation p.R349C 0.33 deleterious(0) probably_damaging(0.999) TCGA-L5-A43E-01 3 47371501 47371501 G C KLHL18 Silent p.V154V 0.19 TCGA-L5-A43E-01 3 97868703 97868703 C G OR5H14 Missense_Mutation p.I158M 0.50 tolerated(0.06) possibly_damaging(0.457) TCGA-L5-A43E-01 4 134072759 134072759 C T PCDH10 Silent p.T488T 0.32 TCGA-L5-A43E-01 4 134073022 134073022 C T PCDH10 Missense_Mutation p.A576V 0.18 deleterious(0.04) benign(0.265) TCGA-L5-A43E-01 4 140396078 140396078 T A RAB33B 3'UTR 0.25 TCGA-L5-A43E-01 4 150607571 150607571 T G RP11-526A4.1 RNA 0.24 TCGA-L5-A43E-01 4 151817569 151817569 T A LRBA Missense_Mutation p.N682Y 0.28 deleterious(0) probably_damaging(0.981) TCGA-L5-A43E-01 4 154626073 154626073 T G TLR2 Missense_Mutation p.L672V 0.22 deleterious(0) probably_damaging(0.999) TCGA-L5-A43E-01 4 155160394 155160394 A C DCHS2 Missense_Mutation p.L2019V 0.45 tolerated(0.48) benign(0.026) TCGA-L5-A43E-01 4 156136650 156136650 T G NPY2R 3'UTR 0.20 TCGA-L5-A43E-01 4 189012589 189012589 T C TRIML2 Missense_Mutation p.S368G 0.28 deleterious(0.01) benign(0.338) TCGA-L5-A43E-01 4 3417774 3417774 G A RGS12 Missense_Mutation p.D785N 0.14 deleterious(0) possibly_damaging(0.674) TCGA-L5-A43E-01 4 5758076 5758076 T G EVC Missense_Mutation p.V517G 0.39 deleterious(0) benign(0.124) TCGA-L5-A43E-01 4 76504172 76504172 G A CDKL2 3'UTR 0.48 TCGA-L5-A43E-01 4 96104172 96104172 T G UNC5C Missense_Mutation p.N776T 0.25 tolerated(0.38) benign(0.001) TCGA-L5-A43E-01 5 101735341 101735341 A C SLCO6A1 Missense_Mutation p.L578V 0.53 deleterious(0.03) possibly_damaging(0.773) TCGA-L5-A43E-01 5 134094486 134094486 G T DDX46 5'Flank 0.62 TCGA-L5-A43E-01 5 147040774 147040774 G A JAKMIP2 Missense_Mutation p.R122C 0.66 deleterious(0) probably_damaging(0.992) TCGA-L5-A43E-01 5 21752212 21752212 G A CDH12 Silent p.F673F 0.18 TCGA-L5-A43E-01 6 125404295 125404295 A C RNF217 3'UTR 0.35 TCGA-L5-A43E-01 6 153076475 153076475 A C VIP Missense_Mutation p.K101T 0.47 deleterious(0) probably_damaging(1) TCGA-L5-A43E-01 6 27278366 27278366 A C POM121L2 Silent p.T528T 0.28 TCGA-L5-A43E-01 6 32038011 32038011 C T TNXB Missense_Mutation p.R1724H 0.24 probably_damaging(0.997) TCGA-L5-A43E-01 6 37626179 37626179 G A MDGA1 Missense_Mutation p.T75M 0.14 deleterious(0) probably_damaging(0.91) TCGA-L5-A43E-01 6 65523282 65523282 A G EYS Silent p.T1144T 0.56 TCGA-L5-A43E-01 6 66115232 66115232 A G EYS Silent p.P297P 0.26 TCGA-L5-A43E-01 6 90312804 90312804 G A ANKRD6 Silent p.A92A 0.25 TCGA-L5-A43E-01 7 103969419 103969419 C T LHFPL3 Silent p.G64G 0.31 TCGA-L5-A43E-01 7 113519553 113519553 T G PPP1R3A Missense_Mutation p.K532Q 0.15 deleterious(0.04) benign(0.03) TCGA-L5-A43E-01 7 114657758 114657758 G C MDFIC 3'UTR 0.58 TCGA-L5-A43E-01 7 123269135 123269135 G A ASB15 Missense_Mutation p.V363I 0.47 tolerated(0.76) benign(0.002) TCGA-L5-A43E-01 7 137255970 137255970 C T DGKI Missense_Mutation p.R633H 0.12 deleterious(0) probably_damaging(0.995) TCGA-L5-A43E-01 7 140273781 140273781 G A DENND2A Nonsense_Mutation p.R425* 0.24 TCGA-L5-A43E-01 7 147675017 147675017 A T CNTNAP2 Silent p.G773G 0.54 TCGA-L5-A43E-01 7 1582613 1582613 A T MAFK 3'UTR 0.27 TCGA-L5-A43E-01 7 4823399 4823399 C T AP5Z1 Silent p.G197G 0.19 TCGA-L5-A43E-01 7 82580702 82580702 T G PCLO Missense_Mutation p.M3068L 0.54 unknown(0) TCGA-L5-A43E-01 7 82584392 82584392 A C PCLO Silent p.S1959S 0.21 TCGA-L5-A43E-01 8 105367289 105367289 C T DCSTAMP Missense_Mutation p.S405L 0.12 tolerated(0.11) benign(0.075) TCGA-L5-A43E-01 8 105507424 105507424 G C LRP12 Missense_Mutation p.Q532E 0.23 tolerated(0.06) benign(0.05) TCGA-L5-A43E-01 8 106816315 106816315 T G ZFPM2 3'UTR 0.41 TCGA-L5-A43E-01 8 110457538 110457538 G A PKHD1L1 Missense_Mutation p.V1814I 0.38 tolerated(0.07) probably_damaging(0.965) TCGA-L5-A43E-01 8 110654996 110654996 G A SYBU Missense_Mutation p.R64C 0.21 deleterious(0.04) probably_damaging(0.927) TCGA-L5-A43E-01 8 132052595 132052595 G A ADCY8 5'UTR 0.15 TCGA-L5-A43E-01 8 132952792 132952792 G A EFR3A Silent p.L19L 0.23 TCGA-L5-A43E-01 8 24384307 24384307 A T ADAM7 3'UTR 0.32 TCGA-L5-A43E-01 8 30704421 30704421 C T TEX15 Missense_Mutation p.E705K 0.07 deleterious(0) probably_damaging(0.933) TCGA-L5-A43E-01 8 32607094 32607094 A T NRG1 Missense_Mutation p.E236V 0.33 deleterious(0.04) benign(0.322) TCGA-L5-A43E-01 8 35606063 35606063 T C UNC5D Silent p.S595S 0.33 TCGA-L5-A43E-01 8 35651188 35651188 T G UNC5D 3'Flank 0.26 TCGA-L5-A43E-01 8 38318743 38318743 C T FGFR1 5'UTR 0.15 TCGA-L5-A43E-01 8 40388987 40388987 A G ZMAT4 3'UTR 0.35 TCGA-L5-A43E-01 8 41166258 41166258 C T SFRP1 Missense_Mutation p.E141K 0.08 tolerated(0.07) benign(0.265) TCGA-L5-A43E-01 8 55534038 55534038 T C RP1 Missense_Mutation p.L171P 0.41 deleterious(0) probably_damaging(0.953) TCGA-L5-A43E-01 8 6668759 6668759 C A XKR5 RNA 0.23 TCGA-L5-A43E-01 8 68934314 68934314 A G PREX2 Missense_Mutation p.E127G 0.39 deleterious(0) probably_damaging(0.996) TCGA-L5-A43E-01 8 75765831 75765831 T A PI15 3'UTR 0.21 TCGA-L5-A43E-01 8 75925214 75925214 G T CRISPLD1 Missense_Mutation p.C156F 0.24 deleterious(0) probably_damaging(0.983) TCGA-L5-A43E-01 8 89086955 89086955 C T MMP16 Missense_Mutation p.R367Q 0.18 deleterious(0.01) possibly_damaging(0.866) TCGA-L5-A43E-01 8 92082604 92082604 C T OTUD6B Silent p.L28L 0.24 TCGA-L5-A43E-01 8 98285912 98285912 A C TSPYL5 3'UTR 0.23 TCGA-L5-A43E-01 9 106882419 106882419 C G SMC2 Missense_Mutation p.A703G 0.46 tolerated(0.24) benign(0.002) TCGA-L5-A43E-01 9 134184601 134184601 G A PPAPDC3 3'UTR 0.70 TCGA-L5-A43E-01 9 138557187 138557187 C T LCN9 Missense_Mutation p.T135M 0.08 deleterious(0.04) benign(0.035) TCGA-L5-A43E-01 9 41962641 41962641 G C RP11-204M4.2 RNA 0.07 TCGA-L5-A43E-01 9 77562828 77562828 A C C9orf40 3'UTR 0.71 TCGA-L5-A43E-01 9 90500069 90500069 G A SPATA31E1 Missense_Mutation p.G223R 0.25 tolerated(0.87) benign(0.004) TCGA-L5-A43E-01 X 108708491 108708491 G T GUCY2F Silent p.L304L 0.85 TCGA-L5-A43E-01 X 12156974 12156974 G A FRMPD4 5'UTR 0.90 TCGA-L5-A43E-01 X 125298766 125298766 T G DCAF12L2 Missense_Mutation p.K381T 0.61 deleterious(0) benign(0.049) TCGA-L5-A43E-01 X 129270036 129270036 C T AIFM1 Missense_Mutation p.R430H 0.82 deleterious(0) probably_damaging(0.955) TCGA-L5-A43E-01 X 6069063 6069063 A C NLGN4X Missense_Mutation p.L149V 0.81 deleterious(0) probably_damaging(0.937) TCGA-L5-A43E-01 X 75649101 75649101 G A MAGEE1 Missense_Mutation p.V260M 0.82 tolerated_low_confidence(0.19) possibly_damaging(0.623) TCGA-L5-A43E-01 X 85969601 85969601 T G DACH2 Missense_Mutation p.L328V 0.75 deleterious(0) probably_damaging(0.998) TCGA-L5-A43H-01 10 103771512 103771512 G T C10orf76 Missense_Mutation p.Q267K 0.19 tolerated(0.32) benign(0.01) TCGA-L5-A43H-01 10 104386980 104386980 G T SUFU Missense_Mutation p.D449Y 0.14 tolerated(1) benign(0.163) TCGA-L5-A43H-01 10 105204417 105204417 C A PDCD11 Missense_Mutation p.H1808N 0.39 deleterious(0) benign(0.137) TCGA-L5-A43H-01 10 14995953 14995953 G A DCLRE1C Silent p.F19F 0.05 TCGA-L5-A43H-01 10 75413174 75413174 G A SYNPO2L Silent p.P165P 0.38 TCGA-L5-A43H-01 10 99160097 99160097 G A RRP12 Missense_Mutation p.R112C 0.10 deleterious(0) probably_damaging(0.962) TCGA-L5-A43H-01 11 1628947 1628947 G A KRTAP5-3 Silent p.S223S 0.17 TCGA-L5-A43H-01 11 1628956 1628956 C T KRTAP5-3 Silent p.K220K 0.16 TCGA-L5-A43H-01 11 73080017 73080017 G C ARHGEF17 3'UTR 0.21 TCGA-L5-A43H-01 11 74995295 74995295 A T ARRB1 Nonsense_Mutation p.Y47* 0.38 TCGA-L5-A43H-01 12 10530782 10530782 G T KLRK1 Missense_Mutation p.P161Q 0.52 tolerated(0.32) benign(0.003) TCGA-L5-A43H-01 12 20807069 20807069 C T PDE3A Silent p.D1038D 0.22 TCGA-L5-A43H-01 12 41323615 41323615 T C CNTN1 Missense_Mutation p.W172R 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A43H-01 12 53663505 53663505 G A ESPL1 Missense_Mutation p.R260H 0.15 deleterious(0) probably_damaging(0.978) TCGA-L5-A43H-01 12 57647802 57647802 G A R3HDM2 3'UTR 0.12 TCGA-L5-A43H-01 12 64491124 64491124 G T SRGAP1 Missense_Mutation p.K594N 0.18 tolerated(0.06) possibly_damaging(0.783) TCGA-L5-A43H-01 12 64536104 64536104 G A SRGAP1 Silent p.L970L 0.20 TCGA-L5-A43H-01 12 69663599 69663599 C G CPSF6 3'UTR 0.17 TCGA-L5-A43H-01 13 80117762 80117762 A G NDFIP2 Missense_Mutation p.Y262C 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A43H-01 14 32560528 32560528 A G ARHGAP5 Missense_Mutation p.N218S 0.19 tolerated(1) benign(0.015) TCGA-L5-A43H-01 14 57866569 57866569 A G NAA30 Missense_Mutation p.I307V 0.33 deleterious(0) possibly_damaging(0.627) TCGA-L5-A43H-01 15 75656447 75656447 G A MAN2C1 Missense_Mutation p.P228L 0.15 deleterious(0.03) benign(0.118) TCGA-L5-A43H-01 15 76192832 76192832 A G UBE2Q2 3'UTR 0.26 TCGA-L5-A43H-01 16 3786138 3786138 C G CREBBP Missense_Mutation p.D1543H 0.24 unknown(0) TCGA-L5-A43H-01 16 47345168 47345168 T C ITFG1 Silent p.L351L 0.49 TCGA-L5-A43H-01 16 83992949 83992949 C A OSGIN1 Missense_Mutation p.P51H 0.19 deleterious(0.04) benign(0.349) TCGA-L5-A43H-01 17 1198846 1198846 G A TUSC5 Missense_Mutation p.R150Q 0.12 deleterious(0.04) benign(0.158) TCGA-L5-A43H-01 17 26976284 26976284 G A SDF2 Missense_Mutation p.A120V 0.09 deleterious(0) probably_damaging(0.97) TCGA-L5-A43H-01 17 37437666 37437666 C T FBXL20 Silent p.V224V 0.26 TCGA-L5-A43H-01 17 38171850 38171850 C T CSF3 Intron 0.06 TCGA-L5-A43H-01 17 71426704 71426704 C G SDK2 Missense_Mutation p.G510A 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A43H-01 17 7483026 7483026 C T CD68 Silent p.L11L 0.30 TCGA-L5-A43H-01 17 7578526 7578527 - A TP53 Frame_Shift_Ins p.C135Lfs*14 0.35 TCGA-L5-A43H-01 18 52891704 52891704 G T TCF4 3'Flank 0.22 TCGA-L5-A43H-01 19 15292541 15292541 C T NOTCH3 Missense_Mutation p.A880T 0.07 tolerated(0.71) benign(0.009) TCGA-L5-A43H-01 19 2790452 2790452 C T THOP1 Missense_Mutation p.P17L 0.08 deleterious(0.01) benign(0.2) TCGA-L5-A43H-01 19 34890655 34890655 C T GPI Silent p.G513G 0.29 TCGA-L5-A43H-01 19 39959492 39959492 G T SUPT5H Missense_Mutation p.M378I 0.36 tolerated(0.53) benign(0.023) TCGA-L5-A43H-01 19 40480482 40480482 A T PSMC4 Missense_Mutation p.K174M 0.29 tolerated(0.09) probably_damaging(0.989) TCGA-L5-A43H-01 19 44097061 44097061 C T IRGQ Missense_Mutation p.R330H 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A43H-01 19 44946800 44946800 G A ZNF229 Missense_Mutation p.H14Y 0.22 tolerated(0.87) benign(0.097) TCGA-L5-A43H-01 19 51918195 51918195 C T SIGLEC10 Missense_Mutation p.G500R 0.18 deleterious(0.01) possibly_damaging(0.874) TCGA-L5-A43H-01 19 52794164 52794164 C T ZNF766 Nonsense_Mutation p.Q374* 0.12 TCGA-L5-A43H-01 19 54802107 54802107 C A LILRA3 Missense_Mutation p.G361W 0.08 deleterious(0) probably_damaging(0.998) TCGA-L5-A43H-01 19 58491630 58491630 C A ZNF606 Nonsense_Mutation p.E140* 0.12 TCGA-L5-A43H-01 1 155922445 155922445 C T ARHGEF2 Missense_Mutation p.R653Q 0.33 tolerated(0.22) possibly_damaging(0.466) TCGA-L5-A43H-01 1 158577071 158577071 G A OR10Z1 Silent p.V281V 0.17 TCGA-L5-A43H-01 1 161641285 161641285 C T FCGR2B Silent p.S79S 0.18 TCGA-L5-A43H-01 1 207109009 207109009 G T PIGR Missense_Mutation p.D400E 0.20 tolerated(1) benign(0.001) TCGA-L5-A43H-01 1 230410227 230410227 A T GALNT2 Missense_Mutation p.M493L 0.15 tolerated(0.43) benign(0.001) TCGA-L5-A43H-01 20 30956919 30956919 C T ASXL1 Missense_Mutation p.T82M 0.08 deleterious(0) possibly_damaging(0.785) TCGA-L5-A43H-01 20 34828331 34828331 T C AAR2 Missense_Mutation p.C181R 0.11 tolerated(0.35) benign(0.116) TCGA-L5-A43H-01 20 5282783 5282783 C T PROKR2 Missense_Mutation p.R353H 0.27 tolerated(0.16) benign(0.004) TCGA-L5-A43H-01 20 57768323 57768323 C T ZNF831 Missense_Mutation p.S750F 0.11 deleterious(0.01) possibly_damaging(0.556) TCGA-L5-A43H-01 22 20909285 20909285 A G MED15 Missense_Mutation p.M101V 0.08 deleterious(0.01) unknown(0) TCGA-L5-A43H-01 22 23235889 23235889 C T IGLL5 Silent p.L72L 0.14 TCGA-L5-A43H-01 22 29661510 29661510 C T RHBDD3 Missense_Mutation p.G36S 0.10 tolerated(1) benign(0) TCGA-L5-A43H-01 22 40731027 40731028 - T TNRC6B 3'UTR 0.24 TCGA-L5-A43H-01 22 43219704 43219704 T A ARFGAP3 Silent p.V210V 0.23 TCGA-L5-A43H-01 2 100006805 100006805 C G EIF5B Missense_Mutation p.Q843E 0.36 possibly_damaging(0.557) TCGA-L5-A43H-01 2 100182070 100182070 T C AFF3 Missense_Mutation p.K1025E 0.07 deleterious(0) probably_damaging(0.992) TCGA-L5-A43H-01 2 150325190 150325190 G A LYPD6 Missense_Mutation p.M83I 0.34 deleterious(0.03) benign(0.306) TCGA-L5-A43H-01 2 202900692 202900692 T A FZD7 Missense_Mutation p.L441Q 0.15 deleterious(0) probably_damaging(0.994) TCGA-L5-A43H-01 2 203847041 203847041 G T CARF Missense_Mutation p.D646Y 0.38 deleterious_low_confidence(0.03) probably_damaging(0.922) TCGA-L5-A43H-01 2 231065665 231065665 A G SP110 Silent p.T355T 0.15 TCGA-L5-A43H-01 2 43818024 43818024 T C THADA Missense_Mutation p.I81V 0.43 tolerated(0.27) benign(0.004) TCGA-L5-A43H-01 2 44177716 44177716 C T LRPPRC Missense_Mutation p.S558N 0.07 tolerated(0.17) benign(0.036) TCGA-L5-A43H-01 2 71653884 71653884 G A ZNF638 Missense_Mutation p.E1629K 0.40 deleterious(0.01) possibly_damaging(0.619) TCGA-L5-A43H-01 2 8946498 8946498 T C KIDINS220 Missense_Mutation p.Y169C 0.12 deleterious(0) probably_damaging(0.981) TCGA-L5-A43H-01 3 123634433 123634433 A G CCDC14 Silent p.P644P 0.06 TCGA-L5-A43H-01 3 132320087 132320087 C T ACKR4 Silent p.D282D 0.04 TCGA-L5-A43H-01 3 151102876 151102876 T C MED12L Missense_Mutation p.L1627S 0.13 deleterious(0) probably_damaging(0.937) TCGA-L5-A43H-01 3 156544566 156544574 AGTCTTAGG - LEKR1 5'UTR 0.45 TCGA-L5-A43H-01 3 169802652 169802652 A C GPR160 Missense_Mutation p.K298Q 0.19 tolerated(0.15) probably_damaging(0.925) TCGA-L5-A43H-01 3 180707422 180707422 G A DNAJC19 5'UTR 0.06 TCGA-L5-A43H-01 3 185347597 185347597 A T SENP2 Missense_Mutation p.M579L 0.14 deleterious(0) probably_damaging(0.987) TCGA-L5-A43H-01 3 196863514 196863514 G C DLG1 Missense_Mutation p.Q340E 0.58 tolerated(0.19) benign(0.129) TCGA-L5-A43H-01 3 46875457 46875457 G A PRSS42 Silent p.G43G 0.07 TCGA-L5-A43H-01 4 170077752 170077752 C A SH3RF1 Missense_Mutation p.G158C 0.08 deleterious(0) probably_damaging(1) TCGA-L5-A43H-01 4 47517556 47517556 C G ATP10D Missense_Mutation p.F118L 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A43H-01 4 76902592 76902592 T C SDAD1 Missense_Mutation p.N76S 0.27 tolerated(0.8) benign(0.004) TCGA-L5-A43H-01 4 78638339 78638339 A C CNOT6L 3'UTR 0.24 TCGA-L5-A43H-01 5 140209869 140209869 G A PCDHA6 Silent p.A731A 0.18 TCGA-L5-A43H-01 5 145834757 145834757 C G TCERG1 Silent p.P66P 0.11 TCGA-L5-A43H-01 5 178040553 178040553 G T CLK4 Missense_Mutation p.F249L 0.18 deleterious(0.01) probably_damaging(0.985) TCGA-L5-A43H-01 5 179260710 179260710 A T SQSTM1 Missense_Mutation p.S365C 0.12 tolerated(0.12) benign(0.005) TCGA-L5-A43H-01 5 32143866 32143866 A G GOLPH3 Silent p.L116L 0.11 TCGA-L5-A43H-01 5 35072680 35072680 C T PRLR Nonsense_Mutation p.W180* 0.29 TCGA-L5-A43H-01 5 61661149 61661149 C G KIF2A Missense_Mutation p.S516C 0.08 deleterious(0) benign(0.222) TCGA-L5-A43H-01 5 88027681 88027681 C T MEF2C Silent p.L243L 0.17 TCGA-L5-A43H-01 5 98232051 98232051 T C CHD1 Missense_Mutation p.Y530C 0.15 deleterious(0) possibly_damaging(0.841) TCGA-L5-A43H-01 6 10402728 10402728 C A TFAP2A Nonsense_Mutation p.E294* 0.43 TCGA-L5-A43H-01 6 133044729 133044729 A G VNN3 Intron 0.33 TCGA-L5-A43H-01 6 18215356 18215357 - GC KDM1B Frame_Shift_Ins p.Q512Rfs*28 0.36 TCGA-L5-A43H-01 6 30615096 30615096 G C C6orf136 Missense_Mutation p.E30Q 0.53 deleterious_low_confidence(0.05) benign(0) TCGA-L5-A43H-01 6 34500722 34500722 G T PACSIN1 3'UTR 0.21 TCGA-L5-A43H-01 6 80196741 80196741 C T LCA5 Missense_Mutation p.E692K 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A43H-01 6 90346865 90346865 C G LYRM2 3'UTR 0.41 TCGA-L5-A43H-01 7 16655488 16655488 G A ANKMY2 Nonsense_Mutation p.R138* 0.44 TCGA-L5-A43H-01 7 17832652 17832652 G A SNX13 3'UTR 0.27 TCGA-L5-A43H-01 7 17833516 17833516 G C SNX13 3'UTR 0.42 TCGA-L5-A43H-01 7 17833695 17833695 G C SNX13 Missense_Mutation p.Q950E 0.31 tolerated_low_confidence(0.06) benign(0.008) TCGA-L5-A43H-01 7 2645633 2645633 T C IQCE Splice_Site p.X622_splice 0.13 TCGA-L5-A43H-01 7 4917679 4917679 G A RADIL Missense_Mutation p.T31M 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A43H-01 7 70256405 70256405 T C AUTS2 3'UTR 0.18 TCGA-L5-A43H-01 7 83675741 83675741 C A SEMA3A Missense_Mutation p.G189V 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A43H-01 7 90895458 90895459 - A FZD1 Frame_Shift_Ins p.I422Nfs*61 0.26 TCGA-L5-A43H-01 8 11996082 11996082 G A USP17L2 Missense_Mutation p.A63V 0.17 tolerated(0.08) benign(0.045) TCGA-L5-A43H-01 8 145584272 145584272 C T SLC52A2 Missense_Mutation p.L342F 0.30 deleterious(0.01) benign(0.202) TCGA-L5-A43H-01 8 146107894 146107894 C T ZNF250 Missense_Mutation p.S230N 0.10 tolerated(0.98) benign(0.006) TCGA-L5-A43H-01 8 3015451 3015451 C A CSMD1 Missense_Mutation p.R1961L 0.19 possibly_damaging(0.864) TCGA-L5-A43H-01 8 8185259 8185259 G T SGK223 Nonsense_Mutation p.C1011* 0.20 TCGA-L5-A43H-01 8 92090650 92090650 A G OTUD6B Missense_Mutation p.T158A 0.24 tolerated(1) benign(0.005) TCGA-L5-A43H-01 8 98837299 98837299 G A LAPTM4B Missense_Mutation p.S265N 0.28 tolerated(0.51) benign(0.199) TCGA-L5-A43H-01 9 102627890 102627890 G C NR4A3 3'UTR 0.39 TCGA-L5-A43H-01 9 139733890 139733891 - T RABL6 Frame_Shift_Ins p.D572* 0.12 TCGA-L5-A43H-01 9 70177178 70177178 C T FOXD4L5 Missense_Mutation p.R269H 0.12 deleterious(0.02) probably_damaging(0.964) TCGA-L5-A43H-01 9 77377816 77377816 G A TRPM6 Silent p.I1257I 0.37 TCGA-L5-A43H-01 X 152101493 152101493 G T ZNF185 Missense_Mutation p.D366Y 0.47 deleterious(0.02) benign(0.132) TCGA-L5-A43H-01 X 155253891 155253891 G A WASH6P RNA 0.33 TCGA-L5-A43H-01 X 69262136 69262136 G A AWAT2 Nonsense_Mutation p.Q250* 0.12 TCGA-L5-A43H-01 X 78427641 78427641 C T GPR174 3'UTR 0.12 TCGA-L5-A43I-01 10 102789979 102789979 C A PDZD7 5'UTR 0.34 TCGA-L5-A43I-01 10 103310478 103310478 G A BTRC Missense_Mutation p.R560Q 0.31 deleterious(0.02) probably_damaging(0.971) TCGA-L5-A43I-01 10 112541506 112541506 G A RBM20 Missense_Mutation p.R380Q 0.23 tolerated(0.48) benign(0.025) TCGA-L5-A43I-01 10 112657823 112657823 C T PDCD4 Missense_Mutation p.R463C 0.19 tolerated(0.16) benign(0.011) TCGA-L5-A43I-01 10 116697985 116697985 C G TRUB1 5'UTR 0.25 TCGA-L5-A43I-01 10 132890657 132890657 G T TCERG1L 3'UTR 0.25 TCGA-L5-A43I-01 10 132944841 132944841 G A TCERG1L Silent p.L373L 0.14 TCGA-L5-A43I-01 10 133106472 133106472 A T TCERG1L Splice_Site p.X224_splice 0.14 TCGA-L5-A43I-01 10 20105948 20105948 C T PLXDC2 5'UTR 0.19 TCGA-L5-A43I-01 10 27454026 27454026 C T MASTL Missense_Mutation p.S196L 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A43I-01 10 49951287 49951287 T C WDFY4 Missense_Mutation p.L718P 0.19 deleterious(0) probably_damaging(0.999) TCGA-L5-A43I-01 10 50714021 50714021 G A ERCC6 Missense_Mutation p.R479C 0.15 tolerated(0.26) benign(0.002) TCGA-L5-A43I-01 10 63854665 63854665 A - ARID5B 3'UTR 0.47 TCGA-L5-A43I-01 10 72511953 72511953 G A ADAMTS14 Missense_Mutation p.R903H 0.20 tolerated(0.12) probably_damaging(0.982) TCGA-L5-A43I-01 10 75673432 75673432 G A PLAU Missense_Mutation p.R199K 0.12 tolerated(1) benign(0) TCGA-L5-A43I-01 10 7621717 7621717 C A ITIH5 Splice_Site p.X473_splice 0.11 TCGA-L5-A43I-01 10 78734264 78734264 A G KCNMA1 Intron 0.36 TCGA-L5-A43I-01 10 86259679 86259679 G A CCSER2 Missense_Mutation p.G792R 0.50 tolerated(0.1) benign(0.413) TCGA-L5-A43I-01 11 117392001 117392001 C T DSCAML1 Missense_Mutation p.E413K 0.35 tolerated(0.3) benign(0.341) TCGA-L5-A43I-01 11 124189525 124189525 G C OR8D2 Missense_Mutation p.S190C 0.07 deleterious(0.01) benign(0.067) TCGA-L5-A43I-01 11 129800980 129800980 A G PRDM10 Silent p.H487H 0.52 TCGA-L5-A43I-01 11 134054596 134054596 C A NCAPD3 Missense_Mutation p.S796I 0.38 deleterious(0) possibly_damaging(0.617) TCGA-L5-A43I-01 11 17519712 17519712 G A USH1C Silent p.G829G 0.44 TCGA-L5-A43I-01 11 25098874 25098874 G C LUZP2 Splice_Site p.X287_splice 0.21 TCGA-L5-A43I-01 11 33880778 33880778 C A LMO2 3'UTR 0.29 TCGA-L5-A43I-01 11 3744432 3744432 C T NUP98 Missense_Mutation p.D701N 0.36 deleterious(0.02) benign(0.286) TCGA-L5-A43I-01 11 43965440 43965440 C T C11orf96 3'Flank 0.45 TCGA-L5-A43I-01 11 55135565 55135565 G T OR4A15 Missense_Mutation p.G69V 0.40 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-L5-A43I-01 11 55798490 55798490 T G OR5AS1 Missense_Mutation p.L199R 0.18 deleterious(0) probably_damaging(0.998) TCGA-L5-A43I-01 11 55890577 55890577 T A OR8H3 Silent p.S243S 0.34 TCGA-L5-A43I-01 11 56184775 56184775 A C OR5R1 Missense_Mutation p.L312V 0.12 tolerated(0.16) benign(0.027) TCGA-L5-A43I-01 11 64695824 64695824 C T PPP2R5B Silent p.L217L 0.47 TCGA-L5-A43I-01 11 65391823 65391823 G A PCNXL3 Missense_Mutation p.R901Q 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A43I-01 11 66466512 66466512 C T SPTBN2 Missense_Mutation p.R1273H 0.29 deleterious(0.04) probably_damaging(0.963) TCGA-L5-A43I-01 11 6648373 6648373 C T DCHS1 Missense_Mutation p.R1966H 0.26 tolerated(0.27) benign(0.018) TCGA-L5-A43I-01 11 77924720 77924720 C T USP35 Missense_Mutation p.A973V 0.38 deleterious(0) probably_damaging(0.938) TCGA-L5-A43I-01 11 93808337 93808337 C A HEPHL1 Intron 0.58 TCGA-L5-A43I-01 12 130890731 130890731 C G RIMBP2 Missense_Mutation p.D995H 0.24 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 12 13248668 13248668 C T GSG1 Intron 0.38 TCGA-L5-A43I-01 12 14766154 14766154 G C GUCY2C Missense_Mutation p.A1040G 0.27 tolerated(0.77) benign(0.001) TCGA-L5-A43I-01 12 18854523 18854523 T G PLCZ1 Intron 0.13 TCGA-L5-A43I-01 12 20833381 20833381 A C PDE3A 3'UTR 0.39 TCGA-L5-A43I-01 12 21614035 21614035 A C PYROXD1 Missense_Mutation p.K276T 0.32 tolerated(0.54) benign(0.027) TCGA-L5-A43I-01 12 21788572 21788572 G A LDHB Silent p.S303S 0.38 TCGA-L5-A43I-01 12 3692262 3692262 G A PRMT8 Silent p.S289S 0.65 TCGA-L5-A43I-01 12 40919229 40919229 T C MUC19 Intron 0.53 TCGA-L5-A43I-01 12 43819398 43819398 T A ADAMTS20 Silent p.V1401V 0.19 TCGA-L5-A43I-01 12 51723603 51723603 G A CELA1 Silent p.G208G 0.50 TCGA-L5-A43I-01 12 52886494 52886494 C T KRT6A Missense_Mutation p.R160Q 0.49 deleterious(0.01) benign(0.332) TCGA-L5-A43I-01 12 54925986 54925986 T C NCKAP1L Silent p.G938G 0.16 TCGA-L5-A43I-01 12 54975838 54975838 C T PPP1R1A Missense_Mutation p.E109K 0.06 tolerated(0.45) benign(0.195) TCGA-L5-A43I-01 12 57577916 57577916 G A LRP1 Missense_Mutation p.R1993Q 0.30 probably_damaging(0.999) TCGA-L5-A43I-01 12 66358693 66358693 C T HMGA2 3'UTR 0.09 TCGA-L5-A43I-01 12 73057971 73057971 C G TRHDE 3'UTR 0.12 TCGA-L5-A43I-01 12 7882110 7882110 T G CLEC4C 3'UTR 0.34 TCGA-L5-A43I-01 12 7981305 7981305 G A SLC2A14 Missense_Mutation p.T247M 0.34 deleterious(0.03) benign(0.129) TCGA-L5-A43I-01 12 79843960 79843960 G T SYT1 3'UTR 0.16 TCGA-L5-A43I-01 12 85492714 85492714 G A LRRIQ1 Missense_Mutation p.E1051K 0.16 tolerated(0.06) possibly_damaging(0.848) TCGA-L5-A43I-01 12 8693456 8693456 T C CLEC4E 5'UTR 0.32 TCGA-L5-A43I-01 13 23906779 23906779 C G SACS Missense_Mutation p.D3746H 0.17 probably_damaging(0.998) TCGA-L5-A43I-01 13 43181933 43181933 C A TNFSF11 3'UTR 0.10 TCGA-L5-A43I-01 13 97639710 97639710 C A OXGR1 Nonsense_Mutation p.G102* 0.73 TCGA-L5-A43I-01 14 106805648 106805648 C T IGHV4-31 5'UTR 0.09 TCGA-L5-A43I-01 14 21512182 21512182 T A RNASE7 3'UTR 0.24 TCGA-L5-A43I-01 14 22509376 22509376 C T TRAV20 Missense_Mutation p.A105V 0.30 deleterious(0) probably_damaging(0.997) TCGA-L5-A43I-01 14 50089073 50089073 A C MGAT2 Missense_Mutation p.K363Q 0.35 tolerated(0.1) benign(0.259) TCGA-L5-A43I-01 14 50360743 50360743 G A ARF6 Missense_Mutation p.D97N 0.09 tolerated_low_confidence(0.35) benign(0.083) TCGA-L5-A43I-01 14 64428292 64428292 A G SYNE2 Silent p.A279A 0.27 TCGA-L5-A43I-01 14 80164036 80164036 G T NRXN3 Missense_Mutation p.R854L 0.28 deleterious(0.02) benign(0) TCGA-L5-A43I-01 14 93406165 93406165 T C ITPK1 3'UTR 0.28 TCGA-L5-A43I-01 14 94173514 94173515 - T UNC79 3'UTR 0.39 TCGA-L5-A43I-01 15 23890248 23890248 C T MAGEL2 Missense_Mutation p.R278H 0.47 deleterious(0) probably_damaging(0.997) TCGA-L5-A43I-01 15 42133719 42133719 G A PLA2G4B Missense_Mutation p.R378Q 0.07 tolerated(0.08) benign(0.216) TCGA-L5-A43I-01 15 53907630 53907630 C T WDR72 Missense_Mutation p.V925I 0.46 tolerated(1) benign(0.001) TCGA-L5-A43I-01 15 74836211 74836211 A G ARID3B 5'UTR 0.30 TCGA-L5-A43I-01 15 83932730 83932730 C T BNC1 Missense_Mutation p.D425N 0.41 deleterious(0) probably_damaging(0.998) TCGA-L5-A43I-01 15 84286908 84286908 G A SH3GL3 Missense_Mutation p.G305R 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 15 91422672 91422672 A C FURIN Splice_Site p.X352_splice 0.46 TCGA-L5-A43I-01 15 93587772 93587772 G - RGMA 3'Flank 0.14 TCGA-L5-A43I-01 16 23093862 23093862 G T USP31 Missense_Mutation p.A616D 0.52 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 16 50667735 50667735 C T NKD1 3'UTR 0.56 TCGA-L5-A43I-01 16 53341776 53341776 G A CHD9 Missense_Mutation p.G2322S 0.58 unknown(0) TCGA-L5-A43I-01 16 70497528 70497528 C T FUK Silent p.L29L 0.22 TCGA-L5-A43I-01 16 72818686 72818687 - A ZFHX3 3'UTR 0.29 TCGA-L5-A43I-01 16 75563605 75563605 C T CHST5 Silent p.P226P 0.30 TCGA-L5-A43I-01 16 89804219 89804219 C T ZNF276 Missense_Mutation p.R494W 0.22 deleterious(0) probably_damaging(0.999) TCGA-L5-A43I-01 16 89925754 89925754 G A SPIRE2 Missense_Mutation p.R485Q 0.18 tolerated(0.47) benign(0.004) TCGA-L5-A43I-01 17 15162444 15162444 T G PMP22 Missense_Mutation p.N49H 0.29 tolerated(0.12) possibly_damaging(0.564) TCGA-L5-A43I-01 17 1840387 1840387 C T RTN4RL1 Silent p.P243P 0.21 TCGA-L5-A43I-01 17 21319073 21319073 C T KCNJ12 Missense_Mutation p.T140M 0.10 deleterious(0) probably_damaging(0.998) TCGA-L5-A43I-01 17 27956502 27956502 C T SSH2 3'UTR 0.17 TCGA-L5-A43I-01 17 32598171 32598171 T G CCL7 Missense_Mutation p.I28S 0.21 deleterious(0.02) benign(0.063) TCGA-L5-A43I-01 17 34074081 34074081 G A GAS2L2 Missense_Mutation p.R347W 0.28 tolerated(0.28) benign(0.002) TCGA-L5-A43I-01 17 3664793 3664793 G A ITGAE Missense_Mutation p.R113W 0.76 deleterious(0.04) benign(0.032) TCGA-L5-A43I-01 17 5042962 5042962 C T USP6 Silent p.C497C 0.72 TCGA-L5-A43I-01 17 53828791 53828791 G A PCTP Intron 0.30 TCGA-L5-A43I-01 17 56434537 56434537 G A RNF43 Intron 0.32 TCGA-L5-A43I-01 17 58512502 58512503 AC - C17orf64 3'Flank 0.26 TCGA-L5-A43I-01 17 62750203 62750203 C T hsa-mir-6080 RNA 0.54 TCGA-L5-A43I-01 17 65905706 65905717 AATATGGATGAA - BPTF In_Frame_Del p.N945_E948del 0.11 TCGA-L5-A43I-01 17 68131233 68131233 T G KCNJ16 3'UTR 0.22 TCGA-L5-A43I-01 17 68174799 68174799 G - KCNJ2 3'UTR 0.17 TCGA-L5-A43I-01 17 73045404 73045404 T C KCTD2 Silent p.T143T 0.20 TCGA-L5-A43I-01 17 73482014 73482014 G A KIAA0195 Silent p.G69G 0.41 TCGA-L5-A43I-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.69 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 17 79206346 79206346 G A ENTHD2 Intron 0.58 TCGA-L5-A43I-01 17 79970144 79970144 G A ASPSCR1 Silent p.T446T 0.56 TCGA-L5-A43I-01 17 9631596 9631596 A C USP43 Silent p.P887P 0.73 TCGA-L5-A43I-01 18 19995559 19995559 A - CTAGE1 Frame_Shift_Del p.F739Sfs*17 0.26 TCGA-L5-A43I-01 18 33291501 33291501 T G GALNT1 3'UTR 0.44 TCGA-L5-A43I-01 19 11941178 11941178 C T ZNF440 Silent p.L28L 0.27 TCGA-L5-A43I-01 19 12551877 12551877 G C CTD-3105H18.16 5'UTR 0.72 TCGA-L5-A43I-01 19 17476700 17476700 C T PLVAP Missense_Mutation p.V192M 0.21 tolerated(0.16) benign(0.006) TCGA-L5-A43I-01 19 18893683 18893683 C T COMP 3'UTR 0.45 TCGA-L5-A43I-01 19 18897059 18897059 C T COMP Missense_Mutation p.D433N 0.27 tolerated(1) possibly_damaging(0.504) TCGA-L5-A43I-01 19 22786054 22786054 A G AC011467.1 3'Flank 0.57 TCGA-L5-A43I-01 19 23927603 23927603 C G ZNF681 Missense_Mutation p.R250T 0.53 deleterious(0.01) unknown(0) TCGA-L5-A43I-01 19 2422216 2422216 C T TMPRSS9 Missense_Mutation p.P806L 0.58 tolerated(0.21) benign(0.005) TCGA-L5-A43I-01 19 36211320 36211320 G - KMT2B Frame_Shift_Del p.E358Nfs*29 0.24 TCGA-L5-A43I-01 19 36939893 36939893 T G ZNF566 Missense_Mutation p.N416H 0.25 deleterious(0) possibly_damaging(0.646) TCGA-L5-A43I-01 19 37006368 37006368 T G ZNF260 5'UTR 0.27 TCGA-L5-A43I-01 19 43683236 43683236 G A PSG5 Intron 0.18 TCGA-L5-A43I-01 19 46056633 46056633 C T OPA3 Intron 0.32 TCGA-L5-A43I-01 19 46056804 46056804 C T OPA3 Intron 0.15 TCGA-L5-A43I-01 19 46056849 46056849 C G OPA3 Intron 0.09 TCGA-L5-A43I-01 19 4714337 4714337 A G DPP9 Silent p.N23N 0.36 TCGA-L5-A43I-01 19 49344457 49344457 G A PLEKHA4 Silent p.T618T 0.15 TCGA-L5-A43I-01 19 51125648 51125648 C T SYT3 3'UTR 0.40 TCGA-L5-A43I-01 19 53303155 53303155 G A ZNF28 Missense_Mutation p.S648L 0.14 deleterious(0.03) benign(0.038) TCGA-L5-A43I-01 19 53761767 53761767 G A VN1R2 Missense_Mutation p.G47S 0.34 unknown(0) TCGA-L5-A43I-01 19 57642310 57642310 G A USP29 Missense_Mutation p.R756K 0.29 tolerated(0.97) benign(0.333) TCGA-L5-A43I-01 19 57648269 57648269 T C ZIM3 Silent p.E71E 0.15 TCGA-L5-A43I-01 19 7928412 7928412 G A EVI5L Missense_Mutation p.E748K 0.44 deleterious_low_confidence(0.01) benign(0.207) TCGA-L5-A43I-01 19 9073728 9073728 C A MUC16 Missense_Mutation p.S4573I 0.44 unknown(0) TCGA-L5-A43I-01 1 110038448 110038448 G A CYB561D1 Missense_Mutation p.R108Q 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-L5-A43I-01 1 145525093 145525095 TTC - ITGA10 In_Frame_Del p.F10del 0.39 TCGA-L5-A43I-01 1 145525099 145525099 C - ITGA10 Frame_Shift_Del p.L13Wfs*4 0.40 TCGA-L5-A43I-01 1 152277405 152277405 C T FLG Silent p.P3319P 0.24 TCGA-L5-A43I-01 1 155884185 155884186 - A KIAA0907 Intron 0.28 TCGA-L5-A43I-01 1 156374203 156374203 C T C1orf61 3'UTR 0.23 TCGA-L5-A43I-01 1 158325247 158325247 G C CD1E Silent p.V171V 0.28 TCGA-L5-A43I-01 1 159890152 159890152 C T TAGLN2 Missense_Mutation p.E50K 0.32 tolerated(0.75) benign(0.055) TCGA-L5-A43I-01 1 160054576 160054576 C T KCNJ9 Silent p.D252D 0.35 TCGA-L5-A43I-01 1 161512661 161512661 G T FCGR3A 3'UTR 0.39 TCGA-L5-A43I-01 1 167780044 167780044 C T ADCY10 Missense_Mutation p.C1530Y 0.26 deleterious(0.01) probably_damaging(0.947) TCGA-L5-A43I-01 1 169100709 169100709 T A ATP1B1 Nonsense_Mutation p.C276* 0.27 TCGA-L5-A43I-01 1 172547523 172547523 G A SUCO Missense_Mutation p.D476N 0.15 deleterious(0.02) benign(0.424) TCGA-L5-A43I-01 1 19486660 19486660 G T UBR4 Missense_Mutation p.A1841D 0.50 probably_damaging(0.958) TCGA-L5-A43I-01 1 206566111 206566111 G A SRGAP2 Silent p.A98A 0.10 TCGA-L5-A43I-01 1 206941961 206941962 AG - IL10 3'UTR 0.25 TCGA-L5-A43I-01 1 22186426 22186426 G A HSPG2 Missense_Mutation p.S1695F 0.25 probably_damaging(0.986) TCGA-L5-A43I-01 1 226834869 226834869 T A ITPKB Missense_Mutation p.R749W 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 1 236988684 236988684 G C MTR Missense_Mutation p.M304I 0.19 deleterious(0.02) benign(0.053) TCGA-L5-A43I-01 1 237947621 237947621 G A RYR2 Silent p.A4203A 0.75 TCGA-L5-A43I-01 1 240408839 240408839 G A FMN2 Intron 0.16 TCGA-L5-A43I-01 1 248084899 248084899 G A OR2T8 Missense_Mutation p.E194K 0.18 deleterious(0.02) probably_damaging(0.982) TCGA-L5-A43I-01 1 248112938 248112938 G A OR2L8 Missense_Mutation p.R260H 0.25 tolerated(0.1) benign(0.042) TCGA-L5-A43I-01 1 248436537 248436537 C T OR2T33 Missense_Mutation p.E194K 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-L5-A43I-01 1 26772909 26772909 G A DHDDS Silent p.T142T 0.48 TCGA-L5-A43I-01 1 27217459 27217459 G A GPATCH3 3'UTR 0.21 TCGA-L5-A43I-01 1 31211879 31211879 G T LAPTM5 Missense_Mutation p.Q140K 0.52 tolerated(0.06) benign(0.032) TCGA-L5-A43I-01 1 35485185 35485185 C T ZMYM6 Missense_Mutation p.G66D 0.15 deleterious(0.01) benign(0.282) TCGA-L5-A43I-01 1 39785373 39785373 T C MACF1 Missense_Mutation p.L1333P 0.19 probably_damaging(0.967) TCGA-L5-A43I-01 1 47655597 47655611 GCCGACATGGCTGCA - PDZK1IP1 Missense_Mutation 0.31 TCGA-L5-A43I-01 1 62740569 62740569 C A KANK4 Silent p.L69L 0.42 TCGA-L5-A43I-01 20 23028817 23028817 A C THBD Missense_Mutation p.I442S 0.23 deleterious(0) probably_damaging(0.992) TCGA-L5-A43I-01 20 31376728 31376728 C T DNMT3B Silent p.A241A 0.50 TCGA-L5-A43I-01 20 33337958 33337958 G A NCOA6 Silent p.P680P 0.24 TCGA-L5-A43I-01 20 33586548 33586548 G A MYH7B Silent p.V1382V 0.29 TCGA-L5-A43I-01 20 40739098 40739098 G T PTPRT Silent p.R1043R 0.24 TCGA-L5-A43I-01 20 62193251 62193251 G A HELZ2 Missense_Mutation p.R2206C 0.13 tolerated(0.06) benign(0.002) TCGA-L5-A43I-01 21 10920111 10920111 T A TPTE Missense_Mutation p.K381N 0.20 deleterious(0.03) probably_damaging(0.965) TCGA-L5-A43I-01 21 22910257 22910257 A C NCAM2 Missense_Mutation p.K831N 0.42 tolerated(0.67) possibly_damaging(0.717) TCGA-L5-A43I-01 21 32490782 32490782 T C TIAM1 3'UTR 0.68 TCGA-L5-A43I-01 21 41416086 41416086 A T DSCAM Missense_Mutation p.W1768R 0.18 deleterious(0) probably_damaging(0.984) TCGA-L5-A43I-01 22 24574184 24574184 C T CABIN1 3'UTR 0.38 TCGA-L5-A43I-01 22 46751484 46751484 A G TRMU Silent p.L339L 0.29 TCGA-L5-A43I-01 22 46776787 46776787 G A CELSR1 Missense_Mutation p.P2385L 0.31 tolerated(0.66) benign(0.004) TCGA-L5-A43I-01 22 50659599 50659599 G A TUBGCP6 Silent p.V1063V 0.37 TCGA-L5-A43I-01 2 100623364 100623364 G A AFF3 Silent p.A226A 0.26 TCGA-L5-A43I-01 2 141643766 141643766 A C LRP1B Missense_Mutation p.L1302R 0.17 possibly_damaging(0.766) TCGA-L5-A43I-01 2 149519397 149519397 G A EPC2 Missense_Mutation p.R238K 0.19 tolerated(0.05) benign(0.049) TCGA-L5-A43I-01 2 175425599 175425599 A G WIPF1 3'UTR 0.38 TCGA-L5-A43I-01 2 175612893 175612893 C T CHRNA1 Missense_Mutation p.V470M 0.14 deleterious(0.01) probably_damaging(0.939) TCGA-L5-A43I-01 2 177055604 177055605 - T HOXD1 3'UTR 0.20 TCGA-L5-A43I-01 2 179260564 179260564 G C OSBPL6 3'Flank 0.18 TCGA-L5-A43I-01 2 179539829 179539829 G C TTN Missense_Mutation p.P11517A 0.27 TCGA-L5-A43I-01 2 198636637 198636637 T C BOLL Missense_Mutation p.H153R 0.44 deleterious(0) probably_damaging(0.915) TCGA-L5-A43I-01 2 198636638 198636638 G T BOLL Missense_Mutation p.H153N 0.44 deleterious(0.04) probably_damaging(0.92) TCGA-L5-A43I-01 2 21232670 21232670 A T APOB Nonsense_Mutation p.L2357* 0.23 TCGA-L5-A43I-01 2 212587123 212587123 C T ERBB4 Missense_Mutation p.C293Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-L5-A43I-01 2 220099955 220099955 C T ANKZF1 Missense_Mutation p.L538F 0.51 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 2 31133619 31133619 A G GALNT14 3'UTR 0.73 TCGA-L5-A43I-01 2 33749506 33749506 T G RASGRP3 Missense_Mutation p.L233R 0.22 tolerated(0.88) benign(0.046) TCGA-L5-A43I-01 2 61349399 61349399 A G KIAA1841 3'UTR 0.12 TCGA-L5-A43I-01 2 62728353 62728353 T C TMEM17 Silent p.E196E 0.16 TCGA-L5-A43I-01 2 67630792 67630792 T G ETAA1 Silent p.T326T 0.21 TCGA-L5-A43I-01 2 85553791 85553791 C T TGOLN2 Missense_Mutation p.R355H 0.51 tolerated(0.26) probably_damaging(0.923) TCGA-L5-A43I-01 2 98851174 98851174 A T VWA3B Missense_Mutation p.E791V 0.20 tolerated(0.07) benign(0.005) TCGA-L5-A43I-01 3 111936291 111936291 T A SLC9C1 Silent p.S596S 0.36 TCGA-L5-A43I-01 3 119133144 119133144 C G ARHGAP31 Missense_Mutation p.P790A 0.08 tolerated(0.12) benign(0.338) TCGA-L5-A43I-01 3 125248679 125248679 C A OSBPL11 3'UTR 0.42 TCGA-L5-A43I-01 3 129824457 129824457 C T FAM86HP RNA 0.20 TCGA-L5-A43I-01 3 130672710 130672710 A C ATP2C1 Missense_Mutation p.T227P 0.09 deleterious(0.01) benign(0.162) TCGA-L5-A43I-01 3 154018442 154018442 C T DHX36 Missense_Mutation p.D468N 0.32 tolerated(0.08) benign(0.009) TCGA-L5-A43I-01 3 161146953 161146953 C T RP11-3P17.5 RNA 0.38 TCGA-L5-A43I-01 3 164907802 164907802 G A SLITRK3 Nonsense_Mutation p.R273* 0.55 TCGA-L5-A43I-01 3 184105786 184105786 G A CHRD Missense_Mutation p.R840H 0.60 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 3 190995876 190995876 T G UTS2B Silent p.R63R 0.20 TCGA-L5-A43I-01 3 195509178 195509178 G A MUC4 Silent p.V3091V 0.11 TCGA-L5-A43I-01 3 195513573 195513573 G A MUC4 Silent p.S1626S 0.04 TCGA-L5-A43I-01 3 27427485 27427485 G C SLC4A7 Silent p.L1121L 0.18 TCGA-L5-A43I-01 3 38592535 38592535 G A SCN5A Silent p.S1776S 0.30 TCGA-L5-A43I-01 3 38592950 38592950 C T SCN5A Missense_Mutation p.R1638Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-L5-A43I-01 3 42775004 42775004 G A CCDC13 Missense_Mutation p.P490L 0.20 tolerated(0.19) benign(0.02) TCGA-L5-A43I-01 3 48465421 48465421 A T PLXNB1 Nonsense_Mutation p.Y200* 0.23 TCGA-L5-A43I-01 3 49699193 49699193 C T BSN Silent p.L3305L 0.32 TCGA-L5-A43I-01 3 57344830 57344830 T C DNAH12 Missense_Mutation p.E323G 0.26 deleterious(0.02) benign(0.149) TCGA-L5-A43I-01 3 58303843 58303843 C T RPP14 Missense_Mutation p.S168F 0.38 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-L5-A43I-01 4 110758747 110758747 A G RRH Missense_Mutation p.I236V 0.60 tolerated(1) benign(0.001) TCGA-L5-A43I-01 4 114275426 114275426 G T ANK2 Silent p.S1884S 0.43 TCGA-L5-A43I-01 4 114304807 114304807 A - ANK2 3'UTR 0.38 TCGA-L5-A43I-01 4 134072185 134072185 C T PCDH10 Missense_Mutation p.A297V 0.45 tolerated(1) benign(0.007) TCGA-L5-A43I-01 4 151160949 151160949 C T DCLK2 Missense_Mutation p.A558V 0.25 deleterious(0) probably_damaging(0.998) TCGA-L5-A43I-01 4 155407671 155407671 A C DCHS2 Missense_Mutation p.L685R 0.31 deleterious(0) benign(0.304) TCGA-L5-A43I-01 4 159568033 159568033 G A RXFP1 Nonsense_Mutation p.W479* 0.22 TCGA-L5-A43I-01 4 3076604 3076606 CAG - HTT In_Frame_Del p.Q38del 0.50 TCGA-L5-A43I-01 4 48501614 48501614 G A FRYL Missense_Mutation p.T2956M 0.26 tolerated(0.09) possibly_damaging(0.893) TCGA-L5-A43I-01 4 5696102 5696102 T G EVC2 Missense_Mutation p.K137T 0.33 deleterious(0.01) possibly_damaging(0.691) TCGA-L5-A43I-01 4 65275035 65275035 C T TECRL Missense_Mutation p.R12H 0.28 tolerated_low_confidence(0.53) benign(0.004) TCGA-L5-A43I-01 4 88997020 88997020 G T PKD2 3'UTR 0.45 TCGA-L5-A43I-01 5 113740276 113740276 G T KCNN2 Missense_Mutation p.A242S 0.32 deleterious(0.05) possibly_damaging(0.9) TCGA-L5-A43I-01 5 115335467 115335468 - T AQPEP Frame_Shift_Ins p.S464Ffs*2 0.46 TCGA-L5-A43I-01 5 127594233 127594233 G A FBN2 3'UTR 0.37 TCGA-L5-A43I-01 5 133915471 133915471 G T JADE2 3'UTR 0.32 TCGA-L5-A43I-01 5 140257113 140257113 G A PCDHA12 Missense_Mutation p.A686T 0.34 tolerated_low_confidence(0.15) benign(0.159) TCGA-L5-A43I-01 5 140348306 140348306 G T PCDHAC2 Missense_Mutation p.S652I 0.19 deleterious(0.01) benign(0.192) TCGA-L5-A43I-01 5 140730363 140730363 C T PCDHGB1 Missense_Mutation p.T179M 0.29 tolerated(0.08) benign(0.147) TCGA-L5-A43I-01 5 140744501 140744501 C T PCDHGA5 Missense_Mutation p.R202C 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A43I-01 5 140774174 140774174 G A PCDHGA8 Silent p.S598S 0.17 TCGA-L5-A43I-01 5 140801607 140801607 C T PCDHGA11 Silent p.D271D 0.18 TCGA-L5-A43I-01 5 140811293 140811293 G C PCDHGA12 Missense_Mutation p.D323H 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-L5-A43I-01 5 146754657 146754657 G A STK32A Missense_Mutation p.G303D 0.25 tolerated(0.46) possibly_damaging(0.543) TCGA-L5-A43I-01 5 161580874 161580874 G A GABRG2 3'UTR 0.43 TCGA-L5-A43I-01 5 176638741 176638741 T A NSD1 Missense_Mutation p.V1114D 0.16 tolerated_low_confidence(0.66) benign(0.002) TCGA-L5-A43I-01 5 38258760 38258760 G A EGFLAM 5'UTR 0.50 TCGA-L5-A43I-01 5 40945409 40945409 G A C7 Missense_Mutation p.R226K 0.06 tolerated(0.46) benign(0.049) TCGA-L5-A43I-01 5 9629173 9629173 G A TAS2R1 3'UTR 0.46 TCGA-L5-A43I-01 6 101076966 101076966 C A ASCC3 Missense_Mutation p.V1434F 0.23 deleterious(0) possibly_damaging(0.698) TCGA-L5-A43I-01 6 111685107 111685107 G A REV3L Silent p.Y2276Y 0.23 TCGA-L5-A43I-01 6 136878442 136878442 T G MAP3K5 3'UTR 0.55 TCGA-L5-A43I-01 6 146350532 146350532 T G GRM1 5'UTR 0.19 TCGA-L5-A43I-01 6 155458470 155458470 G A TIAM2 Missense_Mutation p.D452N 0.33 deleterious(0.03) benign(0.048) TCGA-L5-A43I-01 6 155775979 155775979 C T NOX3 Missense_Mutation p.R74Q 0.23 deleterious(0) probably_damaging(0.973) TCGA-L5-A43I-01 6 26056676 26056676 G A HIST1H1C 5'UTR 0.13 TCGA-L5-A43I-01 6 26205070 26205070 G A HIST1H4E Silent p.V66V 0.23 TCGA-L5-A43I-01 6 26545353 26545353 A T HMGN4 Splice_Site 0.53 TCGA-L5-A43I-01 6 27777905 27777905 C T HIST1H3H Silent p.R18R 0.43 TCGA-L5-A43I-01 6 28227211 28227211 G A NKAPL Missense_Mutation p.R21H 0.51 tolerated(0.14) unknown(0) TCGA-L5-A43I-01 6 29577143 29577144 - G GABBR1 Frame_Shift_Ins p.A575Sfs*2 0.27 TCGA-L5-A43I-01 6 39268168 39268168 A C KCNK17 Intron 0.45 TCGA-L5-A43I-01 6 41204804 41204804 C T TREML4 3'UTR 0.54 TCGA-L5-A43I-01 6 43010843 43010843 G A CUL7 Missense_Mutation p.T1228M 0.57 deleterious(0.02) benign(0.202) TCGA-L5-A43I-01 6 44103069 44103069 C T TMEM63B Missense_Mutation p.R82W 0.55 deleterious(0.02) possibly_damaging(0.711) TCGA-L5-A43I-01 6 45390460 45390460 G A RUNX2 Silent p.Q63Q 0.11 TCGA-L5-A43I-01 6 73108705 73108705 A T RIMS1 Missense_Mutation p.K1590M 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A43I-01 6 87966408 87966408 T A ZNF292 Missense_Mutation p.L1021I 0.42 tolerated_low_confidence(0.08) benign(0.129) TCGA-L5-A43I-01 6 88126494 88126494 A C C6ORF165 Missense_Mutation p.I194L 0.47 deleterious(0) probably_damaging(0.968) TCGA-L5-A43I-01 6 89874210 89874210 A G PM20D2 3'UTR 0.24 TCGA-L5-A43I-01 6 93952823 93952823 T A EPHA7 3'UTR 0.20 TCGA-L5-A43I-01 7 101821910 101821910 G A CUX1 Silent p.Q341Q 0.19 TCGA-L5-A43I-01 7 105248338 105248338 C T ATXN7L1 Splice_Site p.X850_splice 0.15 TCGA-L5-A43I-01 7 105636743 105636743 C T CDHR3 Missense_Mutation p.S219F 0.20 deleterious(0) probably_damaging(0.963) TCGA-L5-A43I-01 7 11030418 11030418 G A PHF14 Missense_Mutation p.S330N 0.13 deleterious(0) probably_damaging(0.992) TCGA-L5-A43I-01 7 123594289 123594289 C T SPAM1 Missense_Mutation p.P222L 0.42 deleterious(0) probably_damaging(1) TCGA-L5-A43I-01 7 141537729 141537729 C T PRSS37 Missense_Mutation p.A121T 0.24 deleterious(0) possibly_damaging(0.881) TCGA-L5-A43I-01 7 141765396 141765396 G A MGAM Intron 0.33 TCGA-L5-A43I-01 7 16640502 16640502 G C ANKMY2 Missense_Mutation p.Q404E 0.36 tolerated_low_confidence(0.29) benign(0) TCGA-L5-A43I-01 7 18788705 18788705 C T HDAC9 Nonsense_Mutation p.R663* 0.36 TCGA-L5-A43I-01 7 36934566 36934566 G A ELMO1 Silent p.S498S 0.48 TCGA-L5-A43I-01 7 40027590 40027590 A G CDK13 Missense_Mutation p.D535G 0.40 tolerated(0.06) probably_damaging(0.989) TCGA-L5-A43I-01 7 44279215 44279215 C T CAMK2B Missense_Mutation p.G332S 0.15 tolerated_low_confidence(0.17) probably_damaging(0.97) TCGA-L5-A43I-01 7 50435935 50435935 A T IKZF1 Intron 0.58 TCGA-L5-A43I-01 7 50468024 50468024 C T IKZF1 Missense_Mutation p.P378L 0.60 deleterious(0.04) benign(0.207) TCGA-L5-A43I-01 7 55499427 55499427 C G LANCL2 3'UTR 0.33 TCGA-L5-A43I-01 7 6183719 6183719 T C USP42 Silent p.C294C 0.11 TCGA-L5-A43I-01 7 63808677 63808677 C A ZNF736 Missense_Mutation p.Q146K 0.49 tolerated(0.22) benign(0.064) TCGA-L5-A43I-01 7 77885499 77885499 A C MAGI2 Missense_Mutation p.L603R 0.09 deleterious(0) probably_damaging(0.926) TCGA-L5-A43I-01 7 92760745 92760745 T C SAMD9L Missense_Mutation p.K1514E 0.09 tolerated(0.15) benign(0.045) TCGA-L5-A43I-01 7 92902025 92902025 C T CCDC132 Nonsense_Mutation p.R261* 0.10 TCGA-L5-A43I-01 7 99581021 99581021 G A AZGP1P1 RNA 0.26 TCGA-L5-A43I-01 8 101534716 101534716 G A ANKRD46 Intron 0.29 TCGA-L5-A43I-01 8 103269913 103269913 G A UBR5 Missense_Mutation p.R2712C 0.77 deleterious(0) probably_damaging(0.99) TCGA-L5-A43I-01 8 109797149 109797149 A C TMEM74 Missense_Mutation p.L60R 0.51 tolerated(0.33) possibly_damaging(0.596) TCGA-L5-A43I-01 8 120770358 120770358 T C TAF2 Missense_Mutation p.Q908R 0.12 tolerated(0.38) benign(0.007) TCGA-L5-A43I-01 8 12947941 12947941 G A DLC1 Silent p.T1298T 0.35 TCGA-L5-A43I-01 8 132051965 132051965 C T ADCY8 Silent p.S205S 0.19 TCGA-L5-A43I-01 8 133067236 133067236 G T OC90 Missense_Mutation p.P13H 0.17 tolerated(0.54) possibly_damaging(0.789) TCGA-L5-A43I-01 8 133858790 133858790 T C PHF20L1 3'UTR 0.10 TCGA-L5-A43I-01 8 134478219 134478219 G A ST3GAL1 Missense_Mutation p.R141C 0.21 probably_damaging(0.974) TCGA-L5-A43I-01 8 139149481 139149481 G A FAM135B Silent p.V1308V 0.14 TCGA-L5-A43I-01 8 144732067 144732067 G C ZNF623 Missense_Mutation p.D9H 0.18 deleterious_low_confidence(0) possibly_damaging(0.861) TCGA-L5-A43I-01 8 24349447 24349447 C T ADAM7 Missense_Mutation p.A463V 0.29 tolerated(0.13) benign(0.136) TCGA-L5-A43I-01 8 32406297 32406297 G A NRG1 Missense_Mutation p.R18Q 0.14 tolerated(0.45) unknown(0) TCGA-L5-A43I-01 8 35616888 35616888 A G UNC5D Silent p.P738P 0.52 TCGA-L5-A43I-01 9 105767543 105767543 A G CYLC2 Silent p.K210K 0.67 TCGA-L5-A43I-01 9 137734830 137734830 G C COL5A1 3'UTR 0.17 TCGA-L5-A43I-01 9 139310802 139310802 C T PMPCA Missense_Mutation p.R198W 0.21 deleterious(0) probably_damaging(0.991) TCGA-L5-A43I-01 9 14084176 14084176 T G NFIB 3'Flank 0.58 TCGA-L5-A43I-01 9 34835649 34835649 G A FAM205B RNA 0.51 TCGA-L5-A43I-01 9 37745632 37745632 C T FRMPD1 Silent p.F1201F 0.11 TCGA-L5-A43I-01 X 127185454 127185454 T C ACTRT1 Silent p.P244P 0.82 TCGA-L5-A43I-01 X 138664506 138664506 G A MCF2 3'UTR 0.73 TCGA-L5-A43I-01 X 150869815 150869815 A G PRRG3 3'UTR 0.79 TCGA-L5-A43I-01 X 152613161 152613161 G A ZNF275 Intron 0.95 TCGA-L5-A43I-01 X 16888333 16888333 C T RBBP7 5'Flank 0.70 TCGA-L5-A43I-01 X 36103549 36103549 A T CHDC2 Nonsense_Mutation p.K179* 0.57 TCGA-L5-A43I-01 X 47086616 47086616 G A CDK16 Silent p.L500L 0.70 TCGA-L5-A43I-01 X 85906159 85906159 A C DACH2 Missense_Mutation p.N254T 0.67 tolerated(0.11) benign(0.002) TCGA-L5-A43I-01 X 88009051 88009051 G C CPXCR1 Missense_Mutation p.M212I 0.67 tolerated(0.23) benign(0.216) TCGA-L5-A43J-01 10 100170525 100170525 G A PYROXD2 Intron 0.64 TCGA-L5-A43J-01 10 100170526 100170526 C T PYROXD2 Intron 0.64 TCGA-L5-A43J-01 10 101911766 101911766 G A ERLIN1 3'UTR 0.33 TCGA-L5-A43J-01 10 102124254 102124254 G A SCD 3'UTR 0.48 TCGA-L5-A43J-01 10 103285773 103285773 G A BTRC Missense_Mutation p.R187Q 0.25 tolerated(0.7) benign(0.003) TCGA-L5-A43J-01 10 104172212 104172212 C T PSD Silent p.A558A 0.36 TCGA-L5-A43J-01 10 104353466 104353466 G A SUFU Missense_Mutation p.R224Q 0.45 tolerated(0.16) benign(0.264) TCGA-L5-A43J-01 10 105006854 105006855 - T RPEL1 3'UTR 0.13 TCGA-L5-A43J-01 10 105063538 105063538 A - PCGF6 3'UTR 0.25 TCGA-L5-A43J-01 10 108923947 108923947 G A SORCS1 Missense_Mutation p.A113V 0.32 tolerated_low_confidence(0.32) benign(0.011) TCGA-L5-A43J-01 10 114220329 114220329 A C VTI1A Missense_Mutation p.E47D 0.18 tolerated(0.05) probably_damaging(0.999) TCGA-L5-A43J-01 10 11504795 11504795 G A USP6NL Missense_Mutation p.S728L 0.65 tolerated_low_confidence(0.22) benign(0.006) TCGA-L5-A43J-01 10 115986880 115986880 A - TDRD1 Frame_Shift_Del p.N1077Ifs*4 0.28 TCGA-L5-A43J-01 10 116203872 116203872 A G ABLIM1 Silent p.L617L 0.31 TCGA-L5-A43J-01 10 117061383 117061383 C T ATRNL1 Missense_Mutation p.A883V 0.26 tolerated(0.29) benign(0.011) TCGA-L5-A43J-01 10 118187509 118187510 - A PNLIPRP3 5'UTR 0.34 TCGA-L5-A43J-01 10 118464786 118464786 C T HSPA12A Missense_Mutation p.D44N 0.33 tolerated_low_confidence(0.34) benign(0.003) TCGA-L5-A43J-01 10 12070974 12070974 G C UPF2 Silent p.V305V 0.56 TCGA-L5-A43J-01 10 128841421 128841421 G A DOCK1 Missense_Mutation p.A711T 0.40 deleterious(0) benign(0.003) TCGA-L5-A43J-01 10 129242473 129242473 G A DOCK1 Silent p.S1760S 0.19 TCGA-L5-A43J-01 10 134682866 134682866 C T TTC40 Missense_Mutation p.A1508T 0.37 tolerated(0.27) benign(0.057) TCGA-L5-A43J-01 10 18965171 18965171 A - ARL5B 3'UTR 0.38 TCGA-L5-A43J-01 10 22830827 22830828 - G PIP4K2A Frame_Shift_Ins p.D315Rfs*2 0.65 TCGA-L5-A43J-01 10 24886394 24886394 T C ARHGAP21 Missense_Mutation p.R1106G 0.56 deleterious(0) probably_damaging(0.996) TCGA-L5-A43J-01 10 27332391 27332391 T C ANKRD26 Missense_Mutation p.M709V 0.74 tolerated(0.33) benign(0.002) TCGA-L5-A43J-01 10 31810288 31810288 A G ZEB1 Silent p.V676V 0.50 TCGA-L5-A43J-01 10 35500810 35500810 G A CREM 3'UTR 0.59 TCGA-L5-A43J-01 10 48390416 48390416 G A RBP3 Silent p.H154H 0.18 TCGA-L5-A43J-01 10 48980252 48980252 C G GLUD1P2 RNA 0.29 TCGA-L5-A43J-01 10 50740752 50740752 C T ERCC6-PGBD3 Missense_Mutation p.A87T 0.39 deleterious_low_confidence(0) probably_damaging(0.943) TCGA-L5-A43J-01 10 53457615 53457615 C T CSTF2T Silent p.G565G 0.21 TCGA-L5-A43J-01 10 53459077 53459077 T C CSTF2T Missense_Mutation p.N78S 0.32 deleterious(0.03) probably_damaging(0.911) TCGA-L5-A43J-01 10 62647970 62647970 C A RHOBTB1 Missense_Mutation p.D486Y 0.49 deleterious(0) probably_damaging(0.933) TCGA-L5-A43J-01 10 70453114 70453114 C T TET1 3'UTR 0.15 TCGA-L5-A43J-01 10 75277223 75277225 ATG - USP54 In_Frame_Del p.H987del 0.21 TCGA-L5-A43J-01 10 75487193 75487193 C T RP11-464F9.1 RNA 0.17 TCGA-L5-A43J-01 10 76780447 76780447 T C KAT6B Missense_Mutation p.Y913H 0.70 possibly_damaging(0.62) TCGA-L5-A43J-01 10 76803696 76803696 C T DUPD1 Missense_Mutation p.V94M 0.20 deleterious(0) probably_damaging(0.987) TCGA-L5-A43J-01 10 78870005 78870005 C T KCNMA1 Missense_Mutation p.V353I 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 10 79579660 79579660 C T DLG5 Silent p.P1173P 0.12 TCGA-L5-A43J-01 10 88195258 88195260 GTT - WAPAL 3'UTR 0.23 TCGA-L5-A43J-01 10 88730275 88730275 A G ADIRF Missense_Mutation p.K56R 0.53 deleterious(0.01) benign(0.025) TCGA-L5-A43J-01 10 91177806 91177806 T C IFIT5 Missense_Mutation p.F284L 0.37 tolerated(0.12) probably_damaging(0.997) TCGA-L5-A43J-01 10 91518600 91518600 T G KIF20B Missense_Mutation p.I1507M 0.46 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 10 97096993 97096993 C T SORBS1 Missense_Mutation p.R975Q 0.26 tolerated(0.11) benign(0.002) TCGA-L5-A43J-01 10 98170377 98170377 A G TLL2 Intron 0.31 TCGA-L5-A43J-01 10 98281178 98281178 A - TM9SF3 3'UTR 0.20 TCGA-L5-A43J-01 10 99215505 99215507 AAG - ZDHHC16 In_Frame_Del p.K306del 0.24 TCGA-L5-A43J-01 11 105852024 105852024 G A GRIA4 3'UTR 0.18 TCGA-L5-A43J-01 11 108004588 108004588 T - ACAT1 Frame_Shift_Del p.L56* 0.21 TCGA-L5-A43J-01 11 109295860 109295860 T C C11orf87 3'UTR 0.55 TCGA-L5-A43J-01 11 110451806 110451806 C T ARHGAP20 Missense_Mutation p.D622N 0.40 deleterious(0.01) probably_damaging(0.989) TCGA-L5-A43J-01 11 113560988 113560988 C T TMPRSS5 Missense_Mutation p.A391T 0.63 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 11 113639628 113639628 G A ZW10 Missense_Mutation p.A56V 0.42 tolerated(0.17) possibly_damaging(0.802) TCGA-L5-A43J-01 11 113660924 113660924 C - ATF4P4 RNA 0.22 TCGA-L5-A43J-01 11 117067147 117067147 G A SIDT2 3'UTR 0.26 TCGA-L5-A43J-01 11 118343390 118343390 A G KMT2A Missense_Mutation p.T506A 0.22 benign(0.001) TCGA-L5-A43J-01 11 118499019 118499019 C T PHLDB1 Missense_Mutation p.R494C 0.50 deleterious(0) probably_damaging(0.972) TCGA-L5-A43J-01 11 118769840 118769840 G C BCL9L Missense_Mutation p.P1262A 0.25 possibly_damaging(0.543) TCGA-L5-A43J-01 11 118772427 118772427 A G BCL9L Silent p.R675R 0.43 TCGA-L5-A43J-01 11 118779083 118779083 G T BCL9L Missense_Mutation p.P103H 0.40 probably_damaging(0.953) TCGA-L5-A43J-01 11 119054391 119054391 C A NLRX1 3'UTR 0.31 TCGA-L5-A43J-01 11 123596704 123596704 G A ZNF202 3'UTR 0.11 TCGA-L5-A43J-01 11 123810341 123810341 T C OR4D5 Silent p.H6H 0.53 TCGA-L5-A43J-01 11 124120778 124120778 C T OR8G1 Missense_Mutation p.A119V 0.23 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-L5-A43J-01 11 1252187 1252187 G A MUC5B Missense_Mutation p.G498S 0.28 unknown(0) TCGA-L5-A43J-01 11 125330507 125330509 TCT - FEZ1 In_Frame_Del p.E186del 0.67 TCGA-L5-A43J-01 11 125454387 125454387 G T EI24 3'UTR 0.52 TCGA-L5-A43J-01 11 125616592 125616592 G A PATE1 Splice_Site p.X30_splice 0.52 TCGA-L5-A43J-01 11 1282626 1282626 G A MUC5B Missense_Mutation p.A5693T 0.34 unknown(0) TCGA-L5-A43J-01 11 129762692 129762692 C A NFRKB Missense_Mutation p.G31V 0.33 tolerated_low_confidence(0.08) unknown(0) TCGA-L5-A43J-01 11 129812346 129812346 T - PRDM10 Frame_Shift_Del p.N314Mfs*8 0.31 TCGA-L5-A43J-01 11 130343039 130343039 C A ADAMTS15 Missense_Mutation p.L726M 0.26 deleterious(0) probably_damaging(0.995) TCGA-L5-A43J-01 11 130775936 130775936 T - SNX19 Frame_Shift_Del p.D786Ifs*35 0.16 TCGA-L5-A43J-01 11 132206082 132206083 - T NTM 3'Flank 0.36 TCGA-L5-A43J-01 11 13399889 13399889 C A ARNTL Missense_Mutation p.P473T 0.78 tolerated(0.76) benign(0.001) TCGA-L5-A43J-01 11 17799295 17799295 T - KCNC1 Intron 0.19 TCGA-L5-A43J-01 11 18103046 18103046 G A SAAL1 Missense_Mutation p.T415M 0.14 tolerated(0.07) benign(0.033) TCGA-L5-A43J-01 11 22400904 22400905 - A SLC17A6 3'UTR 0.25 TCGA-L5-A43J-01 11 3062148 3062148 C T CARS Missense_Mutation p.A145T 0.24 deleterious(0) possibly_damaging(0.746) TCGA-L5-A43J-01 11 33677558 33677558 G T KIAA1549L Missense_Mutation p.A1624S 0.31 tolerated(0.07) benign(0.111) TCGA-L5-A43J-01 11 34680734 34680734 T - EHF 3'UTR 0.26 TCGA-L5-A43J-01 11 36522834 36522834 G A TRAF6 Nonsense_Mutation p.R78* 0.39 TCGA-L5-A43J-01 11 36599907 36599907 T - RAG1 3'UTR 0.54 TCGA-L5-A43J-01 11 45671131 45671131 C T CHST1 3'UTR 0.15 TCGA-L5-A43J-01 11 4676602 4676602 G C OR51E1 3'UTR 0.12 TCGA-L5-A43J-01 11 48510904 48510904 G A OR4A47 Missense_Mutation p.C187Y 0.16 deleterious_low_confidence(0.01) benign(0.424) TCGA-L5-A43J-01 11 51515970 51515970 C T OR4C46 Missense_Mutation p.A230V 0.12 deleterious_low_confidence(0.04) benign(0.021) TCGA-L5-A43J-01 11 57087989 57087989 G A TNKS1BP1 Missense_Mutation p.P98S 0.61 tolerated(0.12) probably_damaging(0.956) TCGA-L5-A43J-01 11 57155247 57155247 C T PRG2 Missense_Mutation p.C197Y 0.08 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 11 59341932 59341932 A - OSBP 3'UTR 0.63 TCGA-L5-A43J-01 11 59425146 59425146 G - PATL1 Frame_Shift_Del p.Q160Rfs*33 0.25 TCGA-L5-A43J-01 11 59947419 59947419 C G MS4A6A Missense_Mutation p.G84A 0.40 tolerated(0.13) possibly_damaging(0.778) TCGA-L5-A43J-01 11 59947431 59947431 T C MS4A6A Missense_Mutation p.Q80R 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 11 61124145 61124145 C T CYB561A3 Missense_Mutation p.G31E 0.28 tolerated(0.12) possibly_damaging(0.687) TCGA-L5-A43J-01 11 63313709 63313709 A - RARRES3 Frame_Shift_Del p.A162Rfs*56 0.45 TCGA-L5-A43J-01 11 63886077 63886079 TTC - FLRT1 3'UTR 0.29 TCGA-L5-A43J-01 11 64536544 64536545 AC - SF1 Frame_Shift_Del p.C404Yfs*14 0.30 TCGA-L5-A43J-01 11 6461701 6461701 A - HPX Frame_Shift_Del p.F70Lfs*16 0.35 TCGA-L5-A43J-01 11 65374944 65374944 C T MAP3K11 Missense_Mutation p.R429H 0.11 deleterious(0.03) possibly_damaging(0.512) TCGA-L5-A43J-01 11 65827296 65827296 C T SF3B2 Missense_Mutation p.A482V 0.11 deleterious(0.01) possibly_damaging(0.804) TCGA-L5-A43J-01 11 66039143 66039143 A - RAB1B Intron 0.48 TCGA-L5-A43J-01 11 6655411 6655411 G A DCHS1 Missense_Mutation p.R642W 0.56 deleterious(0.02) possibly_damaging(0.773) TCGA-L5-A43J-01 11 67202050 67202050 C A RPS6KB2 Intron 0.23 TCGA-L5-A43J-01 11 67209168 67209169 GG - CORO1B Intron 0.53 TCGA-L5-A43J-01 11 67766770 67766770 G A UNC93B1 Missense_Mutation p.A187V 0.27 deleterious(0.01) possibly_damaging(0.718) TCGA-L5-A43J-01 11 67924860 67924860 G A SUV420H1 3'UTR 0.34 TCGA-L5-A43J-01 11 68517736 68517736 C T MTL5 Silent p.A131A 0.19 TCGA-L5-A43J-01 11 68522887 68522887 T - CPT1A 3'UTR 0.42 TCGA-L5-A43J-01 11 6891852 6891852 C G OR10A2 Missense_Mutation p.S289R 0.27 tolerated(1) benign(0) TCGA-L5-A43J-01 11 70644566 70644566 G A SHANK2 Missense_Mutation p.P588S 0.39 tolerated(0.89) benign(0.015) TCGA-L5-A43J-01 11 709356 709356 C T EPS8L2 5'UTR 0.58 TCGA-L5-A43J-01 11 71250101 71250101 C T KRTAP5-8 3'UTR 0.24 TCGA-L5-A43J-01 11 71822269 71822269 A G ANAPC15 Silent p.F18F 0.33 TCGA-L5-A43J-01 11 71906681 71906681 G T FOLR1 Missense_Mutation p.R128L 0.43 deleterious(0) possibly_damaging(0.693) TCGA-L5-A43J-01 11 74415621 74415621 C T CHRDL2 Missense_Mutation p.A221T 0.36 tolerated(0.1) benign(0.009) TCGA-L5-A43J-01 11 76256924 76256924 A G C11orf30 Missense_Mutation p.I1119M 0.39 deleterious_low_confidence(0.03) benign(0.307) TCGA-L5-A43J-01 11 76371703 76371703 G A LRRC32 Missense_Mutation p.R312C 0.43 tolerated(0.18) benign(0.044) TCGA-L5-A43J-01 11 76901898 76901898 A G MYO7A Missense_Mutation p.I1303V 0.35 tolerated(0.57) probably_damaging(0.982) TCGA-L5-A43J-01 11 77320575 77320575 A - AQP11 3'UTR 0.40 TCGA-L5-A43J-01 11 77911710 77911710 C - USP35 Frame_Shift_Del p.M354Wfs*119 0.39 TCGA-L5-A43J-01 11 7818170 7818170 T A OR5P2 Missense_Mutation p.E107V 0.37 deleterious(0) possibly_damaging(0.5) TCGA-L5-A43J-01 11 7818171 7818171 C A OR5P2 Nonsense_Mutation p.E107* 0.37 TCGA-L5-A43J-01 11 8060205 8060205 G T TUB 5'UTR 0.58 TCGA-L5-A43J-01 11 8132633 8132633 C T RIC3 Missense_Mutation p.R241H 0.20 tolerated(0.52) benign(0.016) TCGA-L5-A43J-01 11 82935967 82935967 G A ANKRD42 Silent p.T191T 0.26 TCGA-L5-A43J-01 11 84996271 84996271 G A DLG2 Missense_Mutation p.S60F 0.40 tolerated_low_confidence(0.07) benign(0.01) TCGA-L5-A43J-01 11 88068234 88068234 T - CTSC Frame_Shift_Del p.V64* 0.33 TCGA-L5-A43J-01 11 9090982 9090982 C A SCUBE2 Missense_Mutation p.R193M 0.39 tolerated(0.07) possibly_damaging(0.819) TCGA-L5-A43J-01 11 9164987 9164987 T C DENND5A Missense_Mutation p.N1117S 0.58 deleterious(0) probably_damaging(0.977) TCGA-L5-A43J-01 11 93521196 93521196 C T MED17 Missense_Mutation p.P94S 0.41 deleterious(0) possibly_damaging(0.729) TCGA-L5-A43J-01 11 93796775 93796775 G A HEPHL1 Missense_Mutation p.A173T 0.31 deleterious(0) probably_damaging(0.938) TCGA-L5-A43J-01 11 94802335 94802336 - A SRSF8 3'UTR 0.50 TCGA-L5-A43J-01 11 96117597 96117597 G A CCDC82 Silent p.N105N 0.41 TCGA-L5-A43J-01 12 104187260 104187260 C T NT5DC3 Missense_Mutation p.R282H 0.23 tolerated(0.6) benign(0.006) TCGA-L5-A43J-01 12 104341424 104341424 A - HSP90B1 Frame_Shift_Del p.D801Mfs*56 0.41 TCGA-L5-A43J-01 12 106457424 106457424 A - NUAK1 3'UTR 0.42 TCGA-L5-A43J-01 12 106751627 106751630 TCTA - POLR3B 5'UTR 0.14 TCGA-L5-A43J-01 12 106890645 106890645 G A POLR3B Missense_Mutation p.R978H 0.21 tolerated(0.05) possibly_damaging(0.671) TCGA-L5-A43J-01 12 110350842 110350842 C T TCHP Nonsense_Mutation p.R367* 0.26 TCGA-L5-A43J-01 12 110353217 110353217 C T TCHP Missense_Mutation p.R444C 0.51 deleterious(0.01) benign(0.159) TCGA-L5-A43J-01 12 110777173 110777173 C T ATP2A2 Missense_Mutation p.P503S 0.67 tolerated(0.35) benign(0.006) TCGA-L5-A43J-01 12 111748477 111748477 C T CUX2 Missense_Mutation p.R631W 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 12 112630932 112630932 C T HECTD4 Missense_Mutation p.V2861M 0.20 probably_damaging(0.975) TCGA-L5-A43J-01 12 113831717 113831717 G A SDS Missense_Mutation p.A253V 0.46 tolerated(0.29) benign(0.022) TCGA-L5-A43J-01 12 116418612 116418612 T C MED13L Silent p.K1769K 0.51 TCGA-L5-A43J-01 12 117768638 117768638 G A NOS1 Silent p.S79S 0.53 TCGA-L5-A43J-01 12 120652715 120652715 G A PXN Silent p.F411F 0.54 TCGA-L5-A43J-01 12 120779262 120779262 A - MSI1 3'UTR 0.40 TCGA-L5-A43J-01 12 120984267 120984267 A - RNF10 Frame_Shift_Del p.N74Mfs*46 0.29 TCGA-L5-A43J-01 12 121138085 121138085 C A MLEC 3'UTR 0.41 TCGA-L5-A43J-01 12 121437180 121437180 G A HNF1A Silent p.T537T 0.21 TCGA-L5-A43J-01 12 122691380 122691380 G A B3GNT4 Silent p.T194T 0.51 TCGA-L5-A43J-01 12 122756484 122756484 A - CLIP1 3'Flank 0.24 TCGA-L5-A43J-01 12 123036051 123036051 G A KNTC1 Missense_Mutation p.E393K 0.22 deleterious(0.02) probably_damaging(0.956) TCGA-L5-A43J-01 12 124417966 124417966 G A DNAH10 Missense_Mutation p.R4344Q 0.59 probably_damaging(0.999) TCGA-L5-A43J-01 12 124862853 124862853 C T NCOR2 Silent p.V699V 0.15 TCGA-L5-A43J-01 12 126138243 126138243 G A TMEM132B Missense_Mutation p.E742K 0.30 tolerated(0.83) benign(0.018) TCGA-L5-A43J-01 12 128899918 128899918 G A TMEM132C Missense_Mutation p.G243R 0.48 tolerated(0.45) benign(0.014) TCGA-L5-A43J-01 12 130898732 130898732 T C RIMBP2 Missense_Mutation p.M864V 0.41 deleterious(0) possibly_damaging(0.883) TCGA-L5-A43J-01 12 13232776 13232776 C T KIAA1467 Missense_Mutation p.P566S 0.44 deleterious(0.01) possibly_damaging(0.522) TCGA-L5-A43J-01 12 16713448 16713448 G A LMO3 Silent p.C99C 0.18 TCGA-L5-A43J-01 12 21623237 21623237 T - RECQL Frame_Shift_Del p.K614Rfs*46 0.30 TCGA-L5-A43J-01 12 21715887 21715887 G C GYS2 Missense_Mutation p.L343V 0.46 deleterious(0.03) possibly_damaging(0.566) TCGA-L5-A43J-01 12 26273790 26273790 A T BHLHE41 3'UTR 0.41 TCGA-L5-A43J-01 12 2693755 2693757 GAG - CACNA1C In_Frame_Del p.E772del 0.41 TCGA-L5-A43J-01 12 2943918 2943918 G T NRIP2 Missense_Mutation p.H78N 0.35 tolerated(0.62) benign(0.09) TCGA-L5-A43J-01 12 2968282 2968282 G A FOXM1 Missense_Mutation p.T643M 0.39 tolerated(0.29) benign(0.064) TCGA-L5-A43J-01 12 31256314 31256314 G A DDX11 Missense_Mutation p.R839H 0.32 tolerated_low_confidence(0.17) benign(0.16) TCGA-L5-A43J-01 12 369121 369121 C T SLC6A13 Missense_Mutation p.G33E 0.42 tolerated(0.61) benign(0.099) TCGA-L5-A43J-01 12 392715 392715 T - KDM5A 3'UTR 0.31 TCGA-L5-A43J-01 12 393805 393805 T - KDM5A 3'UTR 0.48 TCGA-L5-A43J-01 12 39947725 39947725 C T ABCD2 Missense_Mutation p.E738K 0.57 tolerated_low_confidence(0.3) benign(0.001) TCGA-L5-A43J-01 12 40699629 40699629 G A LRRK2 Missense_Mutation p.D1274N 0.39 tolerated(0.05) probably_damaging(0.993) TCGA-L5-A43J-01 12 42481529 42481529 C A GXYLT1 3'UTR 0.21 TCGA-L5-A43J-01 12 4411083 4411083 T - CCND2 3'UTR 0.47 TCGA-L5-A43J-01 12 44783452 44783452 T C TMEM117 3'UTR 0.61 TCGA-L5-A43J-01 12 4479741 4479741 C T FGF23 Missense_Mutation p.R175Q 0.34 tolerated(0.1) possibly_damaging(0.734) TCGA-L5-A43J-01 12 49087795 49087795 G A CCNT1 Missense_Mutation p.A401V 0.21 deleterious(0.01) probably_damaging(0.971) TCGA-L5-A43J-01 12 4919431 4919431 G A KCNA6 Missense_Mutation p.R75H 0.47 deleterious(0.05) benign(0.016) TCGA-L5-A43J-01 12 49226301 49226301 T C DDX23 Missense_Mutation p.Y620C 0.08 deleterious(0) probably_damaging(0.968) TCGA-L5-A43J-01 12 49420213 49420213 C T KMT2D Missense_Mutation p.R5179H 0.30 unknown(0) TCGA-L5-A43J-01 12 53073764 53073764 G A KRT1 Silent p.G123G 0.48 TCGA-L5-A43J-01 12 53809428 53809428 A G SP1 3'Flank 0.18 TCGA-L5-A43J-01 12 54105819 54105819 C T CALCOCO1 Missense_Mutation p.R662H 0.47 tolerated_low_confidence(0.08) benign(0.008) TCGA-L5-A43J-01 12 56436335 56436336 AT - RPS26 Frame_Shift_Del p.I44Sfs*11 0.26 TCGA-L5-A43J-01 12 56510435 56510435 T - RPL41 5'UTR 0.21 TCGA-L5-A43J-01 12 57579515 57579515 C T LRP1 Missense_Mutation p.A2222V 0.38 benign(0.341) TCGA-L5-A43J-01 12 57589915 57589915 G A LRP1 Missense_Mutation p.R2916H 0.23 possibly_damaging(0.602) TCGA-L5-A43J-01 12 57871263 57871263 C T ARHGAP9 Silent p.P245P 0.39 TCGA-L5-A43J-01 12 58112063 58112063 G A OS9 Silent p.E423E 0.57 TCGA-L5-A43J-01 12 59270334 59270334 G A LRIG3 Missense_Mutation p.T863M 0.20 deleterious(0) possibly_damaging(0.76) TCGA-L5-A43J-01 12 60175138 60175138 T - SLC16A7 3'UTR 0.18 TCGA-L5-A43J-01 12 65269009 65269009 T C TBC1D30 Missense_Mutation p.M576T 0.41 tolerated_low_confidence(0.2) benign(0.002) TCGA-L5-A43J-01 12 66990679 66990679 G A GRIP1 Silent p.S28S 0.38 TCGA-L5-A43J-01 12 68053151 68053151 C T DYRK2 3'UTR 0.52 TCGA-L5-A43J-01 12 6939693 6939693 G - LEPREL2 Frame_Shift_Del p.G277Afs*42 0.26 TCGA-L5-A43J-01 12 70321513 70321514 - A MYRFL 5'Flank 0.29 TCGA-L5-A43J-01 12 70824403 70824403 G A KCNMB4 Silent p.A201A 0.22 TCGA-L5-A43J-01 12 75601161 75601161 G A KCNC2 Silent p.P201P 0.57 TCGA-L5-A43J-01 12 7635292 7635292 A - CD163 Frame_Shift_Del p.F1065Sfs*7 0.24 TCGA-L5-A43J-01 12 8207110 8207110 T - FOXJ2 3'UTR 0.35 TCGA-L5-A43J-01 12 8543091 8543091 G A LINC00937 RNA 0.64 TCGA-L5-A43J-01 12 91348469 91348469 A G CCER1 Silent p.G17G 0.21 TCGA-L5-A43J-01 12 9252079 9252079 G A A2M Silent p.D533D 0.29 TCGA-L5-A43J-01 12 9875256 9875256 T C CLECL1 Missense_Mutation p.Q157R 0.27 tolerated(0.23) benign(0.084) TCGA-L5-A43J-01 13 103443722 103443722 T - KDELC1 Frame_Shift_Del p.K244Rfs*23 0.42 TCGA-L5-A43J-01 13 24515468 24515468 T - ANKRD20A19P RNA 0.16 TCGA-L5-A43J-01 13 24798196 24798196 G A SPATA13 Missense_Mutation p.G377R 0.39 tolerated_low_confidence(0.55) benign(0.078) TCGA-L5-A43J-01 13 26978124 26978124 C A CDK8 Missense_Mutation p.P434H 0.40 deleterious_low_confidence(0.03) benign(0.219) TCGA-L5-A43J-01 13 27256953 27256953 C T WASF3 Missense_Mutation p.P398L 0.45 deleterious(0.05) probably_damaging(0.998) TCGA-L5-A43J-01 13 28498619 28498619 C T PDX1 Silent p.G211G 0.10 TCGA-L5-A43J-01 13 28636205 28636205 A G FLT3 Missense_Mutation p.V56A 0.19 tolerated_low_confidence(0.4) benign(0.001) TCGA-L5-A43J-01 13 29238658 29238658 G T POMP Silent p.V38V 0.40 TCGA-L5-A43J-01 13 30829644 30829644 C A KATNAL1 Missense_Mutation p.K144N 0.47 tolerated(0.3) benign(0.005) TCGA-L5-A43J-01 13 32709319 32709319 T C FRY Missense_Mutation p.L359S 0.48 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A43J-01 13 32913836 32913837 - A BRCA2 Frame_Shift_Ins p.N1784Kfs*3 0.24 TCGA-L5-A43J-01 13 34410549 34410549 G A RFC3 3'UTR 0.50 TCGA-L5-A43J-01 13 37401948 37401948 T - RFXAP 3'UTR 0.13 TCGA-L5-A43J-01 13 37580070 37580070 T A EXOSC8 Missense_Mutation p.D84E 0.42 tolerated(0.64) benign(0.005) TCGA-L5-A43J-01 13 41133062 41133062 T G FOXO1 3'UTR 0.25 TCGA-L5-A43J-01 13 46840913 46840913 C - LRRC63 Frame_Shift_Del p.H454Mfs*4 0.29 TCGA-L5-A43J-01 13 52604834 52604834 G A UTP14C Missense_Mutation p.E632K 0.37 tolerated(0.06) benign(0.117) TCGA-L5-A43J-01 13 52854009 52854009 C T RP11-248G5.8 RNA 0.23 TCGA-L5-A43J-01 13 58206843 58206843 G A PCDH17 Missense_Mutation p.G55S 0.75 tolerated(0.88) benign(0.109) TCGA-L5-A43J-01 13 58302171 58302171 T A PCDH17 3'UTR 0.35 TCGA-L5-A43J-01 13 61109341 61109341 A G TDRD3 Missense_Mutation p.I698V 0.46 deleterious(0.05) benign(0.046) TCGA-L5-A43J-01 13 61986976 61986976 A G PCDH20 Missense_Mutation p.V419A 0.40 deleterious(0) benign(0.029) TCGA-L5-A43J-01 13 66877245 66877245 T - PCDH9 3'UTR 0.50 TCGA-L5-A43J-01 13 73284242 73284242 A - MZT1 3'UTR 0.20 TCGA-L5-A43J-01 13 73505320 73505320 G C PIBF1 Missense_Mutation p.R583T 0.46 deleterious(0) probably_damaging(0.99) TCGA-L5-A43J-01 13 76374862 76374862 A C LMO7 5'UTR 0.29 TCGA-L5-A43J-01 13 77454950 77454951 - A KCTD12 3'UTR 0.45 TCGA-L5-A43J-01 13 78337494 78337494 G T SLAIN1 3'Flank 0.50 TCGA-L5-A43J-01 13 84452663 84452664 - A SLITRK1 3'UTR 0.25 TCGA-L5-A43J-01 13 98655251 98655251 T C IPO5 Missense_Mutation p.V504A 0.19 tolerated(0.3) benign(0.138) TCGA-L5-A43J-01 14 103194510 103194510 T - RCOR1 3'UTR 0.50 TCGA-L5-A43J-01 14 103598087 103598087 T C TNFAIP2 Silent p.H470H 0.28 TCGA-L5-A43J-01 14 105180705 105180705 C T INF2 Missense_Mutation p.P1069L 0.86 tolerated_low_confidence(0.08) unknown(0) TCGA-L5-A43J-01 14 105246502 105246502 C T AKT1 Missense_Mutation p.G33D 0.10 deleterious(0) probably_damaging(0.99) TCGA-L5-A43J-01 14 105353130 105353130 C T CEP170B Missense_Mutation p.R852W 0.24 deleterious(0.03) benign(0.008) TCGA-L5-A43J-01 14 105411968 105411968 T C AHNAK2 Missense_Mutation p.M3274V 0.06 benign(0.001) TCGA-L5-A43J-01 14 105411976 105411976 T A AHNAK2 Missense_Mutation p.Q3271L 0.05 benign(0.001) TCGA-L5-A43J-01 14 20002279 20002279 C A POTEM Silent p.L381L 0.20 TCGA-L5-A43J-01 14 20845785 20845785 C A TEP1 Missense_Mutation p.G1950V 0.51 deleterious(0) probably_damaging(0.997) TCGA-L5-A43J-01 14 20926824 20926824 A C TMEM55B Missense_Mutation p.I250S 0.34 deleterious(0) possibly_damaging(0.787) TCGA-L5-A43J-01 14 21678705 21678705 T - HNRNPC 3'UTR 0.23 TCGA-L5-A43J-01 14 21936607 21936607 G A RAB2B Missense_Mutation p.R91C 0.47 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 14 21969886 21969886 G A METTL3 Missense_Mutation p.R295C 0.19 deleterious(0.05) possibly_damaging(0.608) TCGA-L5-A43J-01 14 23859332 23859334 CTC - MYH6 In_Frame_Del p.E1222del 0.11 TCGA-L5-A43J-01 14 23889279 23889279 G A MYH7 Silent p.R1167R 0.13 TCGA-L5-A43J-01 14 24037239 24037239 C - AP1G2 5'UTR 0.11 TCGA-L5-A43J-01 14 24615778 24615778 A G PSME2 Missense_Mutation p.C5R 0.07 tolerated(0.12) benign(0.094) TCGA-L5-A43J-01 14 24621199 24621199 C T RNF31 Missense_Mutation p.R710W 0.15 deleterious(0) possibly_damaging(0.582) TCGA-L5-A43J-01 14 24632612 24632612 A G IRF9 Silent p.P130P 0.46 TCGA-L5-A43J-01 14 24902031 24902031 C T KHNYN Missense_Mutation p.R485C 0.53 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 14 35222381 35222381 A - BAZ1A 3'UTR 0.61 TCGA-L5-A43J-01 14 39703161 39703161 G A MIA2 5'UTR 0.71 TCGA-L5-A43J-01 14 42356300 42356300 A G LRFN5 Missense_Mutation p.N158D 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 14 53513450 53513480 AATCAGTTTTAGGCCATTCATGTCCTTCAAG TCAGTTTTAGGCCATTCATGTCCTTCA DDHD1 3'UTR 0.08 TCGA-L5-A43J-01 14 59835592 59835592 T - DAAM1 3'UTR 0.72 TCGA-L5-A43J-01 14 59965486 59965486 T C JKAMP Missense_Mutation p.L167S 0.52 tolerated(0.16) possibly_damaging(0.742) TCGA-L5-A43J-01 14 62214347 62214347 T - HIF1A 3'UTR 0.19 TCGA-L5-A43J-01 14 63671516 63671516 C T RHOJ 5'UTR 0.71 TCGA-L5-A43J-01 14 70714016 70714016 G A ADAM21P1 RNA 0.84 TCGA-L5-A43J-01 14 79270068 79270068 G A NRXN3 Missense_Mutation p.R344Q 0.80 deleterious(0.02) probably_damaging(0.997) TCGA-L5-A43J-01 14 80328899 80328899 A - NRXN3 3'Flank 0.43 TCGA-L5-A43J-01 14 86092478 86092478 C A FLRT2 3'UTR 0.15 TCGA-L5-A43J-01 14 86092634 86092634 C A FLRT2 3'UTR 0.37 TCGA-L5-A43J-01 14 86092726 86092726 A - FLRT2 3'UTR 0.11 TCGA-L5-A43J-01 14 89626912 89626912 T C FOXN3 3'UTR 0.16 TCGA-L5-A43J-01 14 91366489 91366489 T - RPS6KA5 Frame_Shift_Del p.S448Vfs*9 0.43 TCGA-L5-A43J-01 14 92962394 92962394 G A SLC24A4 3'UTR 0.67 TCGA-L5-A43J-01 14 93708433 93708433 A - BTBD7 3'UTR 0.42 TCGA-L5-A43J-01 14 97319255 97319255 C G VRK1 Silent p.V154V 0.26 TCGA-L5-A43J-01 15 101549153 101549153 A G LRRK1 Missense_Mutation p.T292A 0.74 tolerated(0.19) benign(0.001) TCGA-L5-A43J-01 15 20170075 20170075 C T IGHV1OR15-9 Nonsense_Mutation p.W66* 0.74 TCGA-L5-A43J-01 15 24927892 24927892 A - NPAP1 3'UTR 0.45 TCGA-L5-A43J-01 15 25492540 25492540 A - SNORD115-42 RNA 0.41 TCGA-L5-A43J-01 15 28996727 28996727 G A WHAMMP2 RNA 0.66 TCGA-L5-A43J-01 15 29410179 29410179 A G APBA2 3'UTR 0.94 TCGA-L5-A43J-01 15 33443448 33443448 A - FMN1 3'UTR 0.44 TCGA-L5-A43J-01 15 37391811 37391811 G - MEIS2 5'UTR 0.27 TCGA-L5-A43J-01 15 41064413 41064413 C T C15orf62 3'UTR 0.86 TCGA-L5-A43J-01 15 42160632 42160632 C T SPTBN5 Silent p.Q2007Q 0.75 TCGA-L5-A43J-01 15 43817459 43817459 C T MAP1A Missense_Mutation p.A1263V 0.73 benign(0.001) TCGA-L5-A43J-01 15 55965576 55965576 G A PRTG Silent p.S615S 0.46 TCGA-L5-A43J-01 15 62202414 62202414 G A VPS13C Nonsense_Mutation p.R2936* 0.94 TCGA-L5-A43J-01 15 63133188 63133189 - A TLN2 3'UTR 0.18 TCGA-L5-A43J-01 15 64463359 64463359 T - CSNK1G1 3'UTR 0.61 TCGA-L5-A43J-01 15 65628266 65628266 C A IGDCC3 Missense_Mutation p.Q146H 0.68 tolerated(0.05) probably_damaging(0.968) TCGA-L5-A43J-01 15 65702608 65702608 G A IGDCC4 Silent p.N157N 0.79 TCGA-L5-A43J-01 15 66777404 66777404 C T MAP2K1 Missense_Mutation p.A257V 0.81 tolerated(0.11) benign(0.119) TCGA-L5-A43J-01 15 74335396 74335396 C A PML Missense_Mutation p.L593I 0.54 deleterious(0.03) possibly_damaging(0.839) TCGA-L5-A43J-01 15 74623335 74623337 AGA - CCDC33 In_Frame_Del p.K521del 0.88 TCGA-L5-A43J-01 15 75983102 75983103 TC - CSPG4 Frame_Shift_Del p.E101Dfs*5 0.23 TCGA-L5-A43J-01 15 76496546 76496546 T A C15orf27 Missense_Mutation p.F496I 0.71 deleterious_low_confidence(0.03) benign(0.089) TCGA-L5-A43J-01 15 86312008 86312008 G A KLHL25 Missense_Mutation p.T345M 0.77 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A43J-01 15 91453522 91453522 G A MAN2A2 Missense_Mutation p.R526Q 0.68 deleterious(0) probably_damaging(0.991) TCGA-L5-A43J-01 15 92459375 92459375 C T SLCO3A1 Silent p.C111C 0.27 TCGA-L5-A43J-01 15 94858854 94858854 C T MCTP2 Nonsense_Mutation p.R209* 0.69 TCGA-L5-A43J-01 16 10788423 10788423 C T TEKT5 Missense_Mutation p.R103H 0.47 deleterious(0.04) benign(0.035) TCGA-L5-A43J-01 16 11272324 11272324 C T CLEC16A Missense_Mutation p.S980F 0.20 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-L5-A43J-01 16 14351991 14351991 C G MKL2 Missense_Mutation p.L863V 0.19 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 16 1497455 1497455 C T CLCN7 Missense_Mutation p.E730K 0.28 tolerated(0.13) possibly_damaging(0.459) TCGA-L5-A43J-01 16 15132457 15132457 G A NTAN1 Missense_Mutation p.H243Y 0.28 deleterious(0.01) benign(0.013) TCGA-L5-A43J-01 16 15225202 15225202 A G RP11-1186N24.5 RNA 0.50 TCGA-L5-A43J-01 16 15225392 15225392 G A RP11-1186N24.5 RNA 0.12 TCGA-L5-A43J-01 16 1550422 1550422 C T TELO2 Silent p.H359H 0.21 TCGA-L5-A43J-01 16 20352508 20352508 G A UMOD Silent p.G494G 0.48 TCGA-L5-A43J-01 16 20491948 20491948 A C ACSM2A Silent p.G445G 0.63 TCGA-L5-A43J-01 16 2131769 2131769 A G TSC2 Missense_Mutation p.K1262E 0.18 tolerated_low_confidence(0.14) benign(0.144) TCGA-L5-A43J-01 16 24372735 24372735 C T CACNG3 Missense_Mutation p.R167C 0.63 deleterious(0.03) possibly_damaging(0.505) TCGA-L5-A43J-01 16 2647921 2647922 - A PDPK1 3'UTR 0.39 TCGA-L5-A43J-01 16 27506096 27506096 T A GTF3C1 Missense_Mutation p.Q922H 0.38 deleterious(0) probably_damaging(0.94) TCGA-L5-A43J-01 16 2812095 2812095 G T SRRM2 Missense_Mutation p.W522C 0.13 unknown(0) TCGA-L5-A43J-01 16 2821468 2821468 C T TCEB2 3'UTR 0.23 TCGA-L5-A43J-01 16 28967541 28967541 A T NFATC2IP Missense_Mutation p.Q243H 0.35 tolerated(0.55) benign(0) TCGA-L5-A43J-01 16 29678366 29678366 C T SPN 3'UTR 0.29 TCGA-L5-A43J-01 16 29821568 29821568 C T MAZ 3'UTR 0.28 TCGA-L5-A43J-01 16 29918228 29918228 G A KCTD13 Missense_Mutation p.R319C 0.18 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A43J-01 16 30198370 30198370 C T CORO1A Silent p.N154N 0.48 TCGA-L5-A43J-01 16 30794962 30794962 C T ZNF629 Silent p.T229T 0.31 TCGA-L5-A43J-01 16 31150582 31150582 G T PRSS36 Silent p.P815P 0.27 TCGA-L5-A43J-01 16 315060 315060 C T ITFG3 3'UTR 0.60 TCGA-L5-A43J-01 16 3340414 3340414 C T ZNF263 Silent p.C636C 0.20 TCGA-L5-A43J-01 16 3820601 3820601 C T CREBBP Silent p.T950T 0.51 TCGA-L5-A43J-01 16 450578 450579 - G NME4 3'UTR 0.43 TCGA-L5-A43J-01 16 4740935 4740935 T - MGRN1 3'UTR 0.29 TCGA-L5-A43J-01 16 48218359 48218359 C T ABCC11 Missense_Mutation p.V1084M 0.20 deleterious(0.03) benign(0.418) TCGA-L5-A43J-01 16 48295365 48295365 A G LONP2 Missense_Mutation p.T252A 0.43 tolerated(0.43) benign(0) TCGA-L5-A43J-01 16 48381516 48381516 C T LONP2 Silent p.G679G 0.32 TCGA-L5-A43J-01 16 50263455 50263455 A - PAPD5 3'UTR 0.54 TCGA-L5-A43J-01 16 5061151 5061152 - C SEC14L5 Frame_Shift_Ins p.S622Qfs*31 0.25 TCGA-L5-A43J-01 16 50667134 50667135 - C NKD1 Frame_Shift_Ins p.R288Pfs*12 0.37 TCGA-L5-A43J-01 16 50707525 50707525 G A SNX20 Missense_Mutation p.A248V 0.45 tolerated(0.18) possibly_damaging(0.857) TCGA-L5-A43J-01 16 50745137 50745137 C T NOD2 Missense_Mutation p.R439C 0.34 tolerated(0.08) benign(0.036) TCGA-L5-A43J-01 16 53525747 53525748 - A AKTIP 3'UTR 0.52 TCGA-L5-A43J-01 16 56390360 56390361 - G RP11-441F2.5 5'Flank 0.50 TCGA-L5-A43J-01 16 56390939 56390939 A - AMFR 3'Flank 0.60 TCGA-L5-A43J-01 16 56673953 56673953 T - MT1A 3'UTR 0.42 TCGA-L5-A43J-01 16 56704965 56704994 TCTACAACTCCGACTCATTTGCTACATTCC CTACAACCCCGACTCATTTGCTACATTCCT MT1H 3'UTR 0.22 TCGA-L5-A43J-01 16 57113482 57113482 C T NLRC5 Silent p.N1754N 0.11 TCGA-L5-A43J-01 16 57918169 57918169 C T CNGB1 Missense_Mutation p.E1219K 0.18 tolerated(0.27) benign(0.114) TCGA-L5-A43J-01 16 58029381 58029381 G - ZNF319 3'UTR 0.31 TCGA-L5-A43J-01 16 64984778 64984778 C T CDH11 Missense_Mutation p.D596N 0.26 deleterious(0.05) benign(0.005) TCGA-L5-A43J-01 16 64984913 64984913 C T CDH11 Missense_Mutation p.A551T 0.13 deleterious(0) benign(0.172) TCGA-L5-A43J-01 16 67320198 67320198 G A PLEKHG4 Missense_Mutation p.A822T 0.56 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 16 67757025 67757025 T - RANBP10 3'UTR 0.64 TCGA-L5-A43J-01 16 67916729 67916729 G A EDC4 Missense_Mutation p.R1197H 0.11 tolerated(0.24) benign(0.004) TCGA-L5-A43J-01 16 68056444 68056444 G T DDX28 Missense_Mutation p.A221D 0.59 deleterious(0.05) benign(0.238) TCGA-L5-A43J-01 16 68088489 68088489 G A DUS2 Missense_Mutation p.A93T 0.13 deleterious(0.03) probably_damaging(0.934) TCGA-L5-A43J-01 16 69732200 69732200 T - NFAT5 3'UTR 0.34 TCGA-L5-A43J-01 16 69820935 69820935 C T WWP2 Missense_Mutation p.R8W 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.635) TCGA-L5-A43J-01 16 70351424 70351425 TA - DDX19B Frame_Shift_Del p.Y108Cfs*21 0.27 TCGA-L5-A43J-01 16 70590170 70590170 A T SF3B3 Missense_Mutation p.Q600L 0.46 tolerated(0.84) benign(0.005) TCGA-L5-A43J-01 16 70690943 70690943 C T IL34 Silent p.D107D 0.33 TCGA-L5-A43J-01 16 70708260 70708260 G A MTSS1L Silent p.D334D 0.47 TCGA-L5-A43J-01 16 717616 717616 C T WDR90 3'UTR 0.34 TCGA-L5-A43J-01 16 727386 727386 C T RHBDL1 Missense_Mutation p.A294V 0.50 deleterious(0) probably_damaging(0.996) TCGA-L5-A43J-01 16 72845811 72845811 G A ZFHX3 Missense_Mutation p.P1219L 0.41 benign(0.026) TCGA-L5-A43J-01 16 74526855 74526855 C G GLG1 Missense_Mutation p.G412R 0.45 deleterious(0.03) benign(0.303) TCGA-L5-A43J-01 16 75147877 75147877 G A LDHD Silent p.P295P 0.18 TCGA-L5-A43J-01 16 75203737 75203737 G A ZFP1 Silent p.P243P 0.31 TCGA-L5-A43J-01 16 7761452 7761453 - A RBFOX1 3'UTR 0.39 TCGA-L5-A43J-01 16 7762401 7762402 - A RBFOX1 3'UTR 0.40 TCGA-L5-A43J-01 16 81304016 81304016 G A BCMO1 Missense_Mutation p.D366N 0.33 tolerated(0.13) benign(0.062) TCGA-L5-A43J-01 16 81410849 81410849 T C GAN Silent p.L510L 0.40 TCGA-L5-A43J-01 16 84695293 84695293 C T KLHL36 Missense_Mutation p.R469W 0.47 deleterious(0.02) possibly_damaging(0.908) TCGA-L5-A43J-01 16 86585831 86585831 A G MTHFSD Intron 0.31 TCGA-L5-A43J-01 16 87677966 87677966 C T JPH3 Missense_Mutation p.T162M 0.34 deleterious(0) probably_damaging(0.915) TCGA-L5-A43J-01 16 87678537 87678537 C - JPH3 Frame_Shift_Del p.L354Cfs*117 0.30 TCGA-L5-A43J-01 16 89629407 89629407 G - RPL13 Frame_Shift_Del p.R198Kfs*60 0.18 TCGA-L5-A43J-01 16 89777228 89777228 C T VPS9D1 Missense_Mutation p.A342T 0.45 tolerated(0.73) benign(0.002) TCGA-L5-A43J-01 16 8997206 8997206 T A USP7 Missense_Mutation p.E586D 0.33 tolerated(0.54) benign(0.005) TCGA-L5-A43J-01 16 89972642 89972642 C T TCF25 Missense_Mutation p.R557C 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 17 1367847 1367847 A G MYO1C 3'UTR 0.43 TCGA-L5-A43J-01 17 14095522 14095522 G A COX10 Silent p.T304T 0.10 TCGA-L5-A43J-01 17 1628919 1628919 G T WDR81 Missense_Mutation p.E222D 0.38 tolerated(0.29) benign(0.129) TCGA-L5-A43J-01 17 17968960 17968960 C A GID4 3'UTR 0.44 TCGA-L5-A43J-01 17 1839548 1839548 C T RTN4RL1 3'UTR 0.32 TCGA-L5-A43J-01 17 18694321 18694323 TTG - TVP23B In_Frame_Del p.L72del 0.32 TCGA-L5-A43J-01 17 18916758 18916758 C T SLC5A10 Missense_Mutation p.R356W 0.43 deleterious(0) probably_damaging(0.994) TCGA-L5-A43J-01 17 21319498 21319498 G A KCNJ12 Missense_Mutation p.G282S 0.19 tolerated(0.38) benign(0.064) TCGA-L5-A43J-01 17 25969367 25969367 G A LGALS9 Missense_Mutation p.S146N 0.14 tolerated(0.17) benign(0.014) TCGA-L5-A43J-01 17 27211323 27211323 C A FLOT2 Nonsense_Mutation p.E48* 0.08 TCGA-L5-A43J-01 17 27234682 27234682 T A PHF12 Missense_Mutation p.M823L 0.41 deleterious(0.02) probably_damaging(0.97) TCGA-L5-A43J-01 17 27424355 27424355 C T MYO18A Silent p.R1372R 0.21 TCGA-L5-A43J-01 17 29261308 29261308 A C ADAP2 Missense_Mutation p.K168T 0.59 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 17 30986155 30986155 C A MYO1D Missense_Mutation p.A775S 0.20 tolerated(0.82) benign(0.004) TCGA-L5-A43J-01 17 33323122 33323122 G - LIG3 Frame_Shift_Del p.G552Afs*4 0.32 TCGA-L5-A43J-01 17 33457310 33457310 C A FNDC8 Missense_Mutation p.L278M 0.15 tolerated_low_confidence(0.14) benign(0.013) TCGA-L5-A43J-01 17 33879871 33879871 A - SLFN14 Frame_Shift_Del p.P595Qfs*8 0.13 TCGA-L5-A43J-01 17 34311431 34311431 C T CCL14 Missense_Mutation p.R62H 0.52 tolerated(0.14) benign(0.059) TCGA-L5-A43J-01 17 3566992 3566992 C T TAX1BP3 3'UTR 0.19 TCGA-L5-A43J-01 17 36699355 36699355 G A SRCIN1 Intron 0.41 TCGA-L5-A43J-01 17 37093481 37093483 TAG - FBXO47 In_Frame_Del p.A435_N436delinsD 0.38 TCGA-L5-A43J-01 17 37667792 37667795 ACAA - CDK12 Frame_Shift_Del p.N894Kfs*14 0.46 TCGA-L5-A43J-01 17 38171995 38171995 C - CSF3 Frame_Shift_Del p.L33Wfs*16 0.18 TCGA-L5-A43J-01 17 38911154 38911154 G A KRT25 Missense_Mutation p.R124C 0.46 deleterious(0.01) benign(0.344) TCGA-L5-A43J-01 17 39296576 39296576 C T KRTAP4-6 Missense_Mutation p.C55Y 0.23 deleterious(0) unknown(0) TCGA-L5-A43J-01 17 3936179 3936179 T C ZZEF1 Silent p.P2234P 0.28 TCGA-L5-A43J-01 17 39633867 39633867 G A KRT35 Missense_Mutation p.R375W 0.24 deleterious(0.02) probably_damaging(1) TCGA-L5-A43J-01 17 39785135 39785135 A G KRT17 5'Flank 0.18 TCGA-L5-A43J-01 17 40270397 40270399 CTC - KAT2A In_Frame_Del p.E366del 0.18 TCGA-L5-A43J-01 17 40315711 40315711 C G KCNH4 Missense_Mutation p.G797A 0.54 tolerated(0.86) benign(0.001) TCGA-L5-A43J-01 17 41605290 41605290 G A ETV4 3'UTR 0.25 TCGA-L5-A43J-01 17 41958085 41958085 G A MPP2 Missense_Mutation p.P375L 0.26 deleterious(0) possibly_damaging(0.608) TCGA-L5-A43J-01 17 42249535 42249535 C T ASB16 Silent p.V141V 0.28 TCGA-L5-A43J-01 17 46000463 46000463 A - SP2 Frame_Shift_Del p.K400Sfs*25 0.28 TCGA-L5-A43J-01 17 46005405 46005405 C T SP2 3'UTR 0.30 TCGA-L5-A43J-01 17 46628044 46628044 G A HOXB3 Silent p.G316G 0.25 TCGA-L5-A43J-01 17 4711646 4711646 T - PLD2 Frame_Shift_Del p.Q108Rfs*8 0.30 TCGA-L5-A43J-01 17 4803451 4803451 G - C17orf107 Intron 0.29 TCGA-L5-A43J-01 17 48940076 48940076 A - TOB1 3'UTR 0.53 TCGA-L5-A43J-01 17 4996726 4996728 CTC - ZFP3 3'UTR 0.38 TCGA-L5-A43J-01 17 53039053 53039053 A C COX11 3'UTR 0.24 TCGA-L5-A43J-01 17 53400189 53400189 A T HLF 3'UTR 0.36 TCGA-L5-A43J-01 17 54968084 54968085 AG - TRIM25 3'UTR 0.44 TCGA-L5-A43J-01 17 55058513 55058513 C A SCPEP1 Silent p.A49A 0.42 TCGA-L5-A43J-01 17 56440667 56440667 A G RNF43 Missense_Mutation p.V184A 0.25 tolerated(0.26) probably_damaging(0.997) TCGA-L5-A43J-01 17 57917896 57917896 T C VMP1 3'UTR 0.19 TCGA-L5-A43J-01 17 58512851 58512851 G A C17orf64 3'Flank 0.25 TCGA-L5-A43J-01 17 61910074 61910076 GAG - SMARCD2 3'UTR 0.19 TCGA-L5-A43J-01 17 61911556 61911556 A G SMARCD2 Missense_Mutation p.Y352H 0.35 tolerated(0.1) benign(0.018) TCGA-L5-A43J-01 17 64224221 64224221 G A APOH Missense_Mutation p.P53L 0.53 deleterious(0) probably_damaging(0.916) TCGA-L5-A43J-01 17 65337163 65337163 G A PSMD12 Silent p.S389S 0.31 TCGA-L5-A43J-01 17 72248476 72248476 T C TTYH2 Missense_Mutation p.I407T 0.45 deleterious(0.04) benign(0.05) TCGA-L5-A43J-01 17 72363813 72363813 A G GPR142 Missense_Mutation p.R57G 0.62 deleterious_low_confidence(0) possibly_damaging(0.587) TCGA-L5-A43J-01 17 7293585 7293585 C - TMEM256-PLSCR3 3'UTR 0.47 TCGA-L5-A43J-01 17 73234468 73234470 CTC - GGA3 In_Frame_Del p.E688del 0.45 TCGA-L5-A43J-01 17 73487189 73487189 G A KIAA0195 Silent p.T396T 0.31 TCGA-L5-A43J-01 17 73623721 73623723 TCT - RECQL5 In_Frame_Del p.K952del 0.35 TCGA-L5-A43J-01 17 7369187 7369187 C T ZBTB4 Missense_Mutation p.A312T 0.18 possibly_damaging(0.821) TCGA-L5-A43J-01 17 74540281 74540281 G A PRCD 3'Flank 0.29 TCGA-L5-A43J-01 17 7482902 7482903 TT - CD68 5'UTR 0.29 TCGA-L5-A43J-01 17 75208083 75208083 G A SEC14L1 Missense_Mutation p.V555M 0.21 deleterious(0.01) benign(0.446) TCGA-L5-A43J-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.40 deleterious(0) probably_damaging(0.997) TCGA-L5-A43J-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.44 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 17 76100682 76100682 C T TNRC6C Missense_Mutation p.A1646V 0.26 deleterious(0.02) benign(0.294) TCGA-L5-A43J-01 17 76127679 76127679 C T TMC8 Missense_Mutation p.P4S 0.20 tolerated_low_confidence(0.35) benign(0) TCGA-L5-A43J-01 17 77710926 77710926 T C ENPP7 Silent p.P371P 0.35 TCGA-L5-A43J-01 17 78032417 78032417 G C CCDC40 Missense_Mutation p.E428D 0.49 tolerated(0.14) benign(0.029) TCGA-L5-A43J-01 17 78085835 78085835 T C GAA Missense_Mutation p.F564L 0.29 tolerated(0.26) benign(0.014) TCGA-L5-A43J-01 17 78360569 78360569 C A RNF213 Missense_Mutation p.L4934I 0.22 possibly_damaging(0.788) TCGA-L5-A43J-01 17 7979514 7979514 G A ALOX12B Missense_Mutation p.A504V 0.51 deleterious(0.01) possibly_damaging(0.785) TCGA-L5-A43J-01 17 79872373 79872373 C T SIRT7 Missense_Mutation p.V205M 0.48 deleterious(0.05) benign(0.166) TCGA-L5-A43J-01 17 80046083 80046083 C T FASN Silent p.T898T 0.22 TCGA-L5-A43J-01 17 80397532 80397532 G A HEXDC Missense_Mutation p.E309K 0.50 deleterious(0) probably_damaging(0.996) TCGA-L5-A43J-01 17 80400297 80400298 - G HEXDC Frame_Shift_Ins p.A532Gfs*31 0.49 TCGA-L5-A43J-01 17 8053368 8053368 C T PER1 Silent p.P150P 0.11 TCGA-L5-A43J-01 17 80895806 80895806 G A TBCD Intron 0.49 TCGA-L5-A43J-01 17 8638830 8638830 G A CCDC42 Missense_Mutation p.R198C 0.44 deleterious(0) benign(0.425) TCGA-L5-A43J-01 17 910416 910416 C T ABR Missense_Mutation p.V827I 0.46 deleterious(0) probably_damaging(0.986) TCGA-L5-A43J-01 17 9578294 9578294 A G USP43 Missense_Mutation p.Q276R 0.43 deleterious(0.01) possibly_damaging(0.542) TCGA-L5-A43J-01 18 10699097 10699097 C T PIEZO2 Missense_Mutation p.G2061S 0.40 tolerated(0.92) benign(0) TCGA-L5-A43J-01 18 12277160 12277160 C T CIDEA Missense_Mutation p.T184M 0.41 deleterious(0.02) probably_damaging(0.968) TCGA-L5-A43J-01 18 19153489 19153489 A - ESCO1 Frame_Shift_Del p.L439* 0.15 TCGA-L5-A43J-01 18 19231211 19231211 A - ABHD3 3'UTR 0.20 TCGA-L5-A43J-01 18 3534565 3534565 G A DLGAP1 Silent p.A702A 0.54 TCGA-L5-A43J-01 18 43248420 43248420 G A SLC14A2 Missense_Mutation p.V672I 0.21 tolerated(0.07) benign(0.038) TCGA-L5-A43J-01 18 43459143 43459143 A - EPG5 Frame_Shift_Del p.Y1902Ifs*26 0.19 TCGA-L5-A43J-01 18 43844099 43844099 A - C18orf25 3'UTR 0.40 TCGA-L5-A43J-01 18 43844672 43844674 TTC - C18orf25 3'UTR 0.50 TCGA-L5-A43J-01 18 46447624 46447624 A - SMAD7 3'UTR 0.61 TCGA-L5-A43J-01 18 47802303 47802304 CA - MBD1 Frame_Shift_Del p.C188Wfs*13 0.17 TCGA-L5-A43J-01 18 50589808 50589808 T C DCC Silent p.P373P 0.25 TCGA-L5-A43J-01 18 50592505 50592505 G T DCC Missense_Mutation p.Q410H 0.20 deleterious(0.02) possibly_damaging(0.907) TCGA-L5-A43J-01 18 54348614 54348614 G A WDR7 Missense_Mutation p.G113S 0.21 tolerated(0.45) benign(0.376) TCGA-L5-A43J-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.34 TCGA-L5-A43J-01 18 59922664 59922664 C T KIAA1468 Nonsense_Mutation p.R617* 0.53 TCGA-L5-A43J-01 18 61637382 61637382 G A SERPINB8 5'UTR 0.29 TCGA-L5-A43J-01 18 6975948 6975948 A G LAMA1 Silent p.G2159G 0.40 TCGA-L5-A43J-01 18 71749238 71749238 T - FBXO15 Frame_Shift_Del p.N396Ifs*25 0.38 TCGA-L5-A43J-01 18 72343072 72343072 G A ZNF407 Missense_Mutation p.G33S 0.41 tolerated_low_confidence(0.46) benign(0) TCGA-L5-A43J-01 18 77474867 77474867 C T CTDP1 Silent p.S469S 0.26 TCGA-L5-A43J-01 19 10403406 10403406 G A ICAM5 Silent p.A360A 0.39 TCGA-L5-A43J-01 19 10602788 10602788 C T KEAP1 Missense_Mutation p.V264I 0.37 tolerated(0.19) benign(0.005) TCGA-L5-A43J-01 19 11032872 11032872 T - CARM1 3'UTR 0.28 TCGA-L5-A43J-01 19 11033024 11033024 T - CARM1 3'UTR 0.23 TCGA-L5-A43J-01 19 11123691 11123691 A G SMARCA4 Missense_Mutation p.M781V 0.05 possibly_damaging(0.9) TCGA-L5-A43J-01 19 1122525 1122525 G A SBNO2 Missense_Mutation p.A316V 0.38 deleterious(0.03) probably_damaging(0.995) TCGA-L5-A43J-01 19 11564773 11564773 T - ELAVL3 3'UTR 0.39 TCGA-L5-A43J-01 19 11918803 11918803 G T ZNF491 3'UTR 0.18 TCGA-L5-A43J-01 19 12157236 12157236 T - ZNF878 Frame_Shift_Del p.K46Nfs*18 0.20 TCGA-L5-A43J-01 19 1220393 1220393 C T STK11 Silent p.D162D 0.31 TCGA-L5-A43J-01 19 13065136 13065138 CTT - GADD45GIP1 In_Frame_Del p.K185del 0.37 TCGA-L5-A43J-01 19 13873201 13873201 C T CCDC130 Missense_Mutation p.T221M 0.38 deleterious(0.01) possibly_damaging(0.788) TCGA-L5-A43J-01 19 14208488 14208488 T C PRKACA Splice_Site p.X183_splice 0.39 TCGA-L5-A43J-01 19 1434830 1434830 G - DAZAP1 Frame_Shift_Del p.G383Afs*46 0.37 TCGA-L5-A43J-01 19 14677646 14677646 C T NDUFB7 Missense_Mutation p.R71H 0.17 deleterious(0.02) possibly_damaging(0.698) TCGA-L5-A43J-01 19 15222161 15222161 T C SYDE1 Missense_Mutation p.V443A 0.26 deleterious(0.03) possibly_damaging(0.73) TCGA-L5-A43J-01 19 15769134 15769134 T C CYP4F3 Silent p.H392H 0.40 TCGA-L5-A43J-01 19 16345014 16345014 G A AP1M1 Missense_Mutation p.R405H 0.38 deleterious(0) benign(0.344) TCGA-L5-A43J-01 19 16799143 16799143 C T TMEM38A Silent p.S287S 0.44 TCGA-L5-A43J-01 19 1796768 1796768 C A ATP8B3 Missense_Mutation p.W565C 0.37 deleterious(0.01) benign(0.316) TCGA-L5-A43J-01 19 17972276 17972276 G T RPL18A Missense_Mutation p.G65W 0.31 deleterious(0) probably_damaging(0.928) TCGA-L5-A43J-01 19 18100628 18100628 G A KCNN1 Missense_Mutation p.R425H 0.37 deleterious(0) probably_damaging(0.987) TCGA-L5-A43J-01 19 18266584 18266584 C T PIK3R2 5'UTR 0.22 TCGA-L5-A43J-01 19 18967000 18967000 C A UPF1 Missense_Mutation p.P572H 0.63 tolerated(0.06) benign(0.017) TCGA-L5-A43J-01 19 19145003 19145003 T C ARMC6 5'UTR 0.76 TCGA-L5-A43J-01 19 1954193 1954193 C T CSNK1G2 Intron 0.42 TCGA-L5-A43J-01 19 2038031 2038031 C - MKNK2 3'UTR 0.18 TCGA-L5-A43J-01 19 2432415 2432415 G A LMNB2 Missense_Mutation p.T530M 0.74 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A43J-01 19 35770659 35770659 A - USF2 3'UTR 0.37 TCGA-L5-A43J-01 19 35828664 35828664 C T CD22 Missense_Mutation p.P242L 0.60 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 19 38937180 38937180 C A RYR1 Missense_Mutation p.P234T 0.44 benign(0.18) TCGA-L5-A43J-01 19 38968461 38968461 C T RYR1 Missense_Mutation p.R1469W 0.80 probably_damaging(0.994) TCGA-L5-A43J-01 19 3984216 3984216 T C EEF2 Missense_Mutation p.I46V 0.59 deleterious(0.05) benign(0.039) TCGA-L5-A43J-01 19 40392611 40392611 C T FCGBP Silent p.P2631P 0.27 TCGA-L5-A43J-01 19 40396087 40396087 C T FCGBP Missense_Mutation p.R2437Q 0.31 possibly_damaging(0.553) TCGA-L5-A43J-01 19 41223790 41223791 - A ITPKC Frame_Shift_Ins p.Q253Tfs*4 0.29 TCGA-L5-A43J-01 19 45996513 45996513 G - RTN2 Frame_Shift_Del p.P313Lfs*9 0.32 TCGA-L5-A43J-01 19 46029855 46029855 A T VASP 3'UTR 0.50 TCGA-L5-A43J-01 19 46328449 46328449 G A SYMPK Silent p.L824L 0.62 TCGA-L5-A43J-01 19 46914706 46914706 A G CCDC8 Silent p.A454A 0.19 TCGA-L5-A43J-01 19 47423886 47423886 C T ARHGAP35 Nonsense_Mutation p.Q652* 0.71 TCGA-L5-A43J-01 19 4794097 4794097 C T FEM1A 3'UTR 0.51 TCGA-L5-A43J-01 19 50363638 50363639 - G PTOV1 3'UTR 0.29 TCGA-L5-A43J-01 19 504772 504772 C T MADCAM1 Missense_Mutation p.P319L 0.52 deleterious(0.01) possibly_damaging(0.713) TCGA-L5-A43J-01 19 50824036 50824036 G A KCNC3 Missense_Mutation p.R662C 0.78 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-L5-A43J-01 19 51165133 51165133 G A SHANK1 3'UTR 0.52 TCGA-L5-A43J-01 19 51274615 51274615 G A GPR32 Missense_Mutation p.R253Q 0.65 tolerated(0.29) benign(0.274) TCGA-L5-A43J-01 19 51391542 51391543 - T KLKP1 RNA 0.44 TCGA-L5-A43J-01 19 53854383 53854383 A G ZNF845 Missense_Mutation p.H152R 0.24 tolerated(0.15) probably_damaging(0.989) TCGA-L5-A43J-01 19 54313232 54313232 G A NLRP12 Missense_Mutation p.R561C 0.50 deleterious(0) probably_damaging(0.961) TCGA-L5-A43J-01 19 54379518 54379518 A T MYADM 3'UTR 0.40 TCGA-L5-A43J-01 19 54379520 54379520 A G MYADM 3'UTR 0.47 TCGA-L5-A43J-01 19 54656009 54656009 C T CNOT3 Missense_Mutation p.A551V 0.69 tolerated(0.1) possibly_damaging(0.483) TCGA-L5-A43J-01 19 55263121 55263121 G A KIR2DL3 Missense_Mutation p.V246I 0.12 tolerated(0.77) benign(0.006) TCGA-L5-A43J-01 19 55361941 55361941 C T KIR3DL2 Missense_Mutation p.T4M 0.76 tolerated(0.65) benign(0.003) TCGA-L5-A43J-01 19 55874319 55874319 C T FAM71E2 Missense_Mutation p.R39H 0.40 deleterious(0.04) possibly_damaging(0.491) TCGA-L5-A43J-01 19 56089076 56089076 T - ZNF579 3'UTR 0.48 TCGA-L5-A43J-01 19 56249721 56249722 - A NLRP9 Frame_Shift_Ins p.S7Ffs*21 0.50 TCGA-L5-A43J-01 19 5653399 5653399 C T SAFB Silent p.D498D 0.36 TCGA-L5-A43J-01 19 57006425 57006425 G A ZNF667-AS1 RNA 0.70 TCGA-L5-A43J-01 19 5866418 5866418 G T FUT5 3'UTR 0.46 TCGA-L5-A43J-01 19 6151730 6151730 C T ACSBG2 Missense_Mutation p.R104C 0.36 deleterious(0.02) benign(0.175) TCGA-L5-A43J-01 19 6210417 6210418 - T MLLT1 3'Flank 0.27 TCGA-L5-A43J-01 19 621120 621120 G A POLRMT Missense_Mutation p.R860C 0.41 deleterious(0) probably_damaging(0.96) TCGA-L5-A43J-01 19 6413424 6413425 - T KHSRP 3'UTR 0.18 TCGA-L5-A43J-01 19 6475732 6475732 G A DENND1C Silent p.H270H 0.44 TCGA-L5-A43J-01 19 8563644 8563644 G A PRAM1 Missense_Mutation p.R350C 0.34 tolerated(0.2) benign(0.002) TCGA-L5-A43J-01 19 8971684 8971684 T C MUC16 Missense_Mutation p.H14303R 0.15 possibly_damaging(0.903) TCGA-L5-A43J-01 19 9271738 9271738 C T ZNF317 Missense_Mutation p.R473C 0.12 deleterious(0.03) benign(0.017) TCGA-L5-A43J-01 19 9296772 9296773 - T OR7D2 Frame_Shift_Ins p.P108Sfs*14 0.29 TCGA-L5-A43J-01 19 9578028 9578028 C T ZNF560 Missense_Mutation p.R532H 0.40 tolerated(0.16) benign(0) TCGA-L5-A43J-01 1 100378027 100378028 - A AGL Frame_Shift_Ins p.N1304Kfs*7 0.49 TCGA-L5-A43J-01 1 100547662 100547662 G T HIAT1 Missense_Mutation p.R457M 0.39 deleterious(0.02) benign(0.36) TCGA-L5-A43J-01 1 101194932 101194932 C A VCAM1 Missense_Mutation p.L400I 0.44 tolerated(0.43) possibly_damaging(0.724) TCGA-L5-A43J-01 1 1019361 1019361 G A C1orf159 Intron 0.45 TCGA-L5-A43J-01 1 104162312 104162312 T C AMY2A Missense_Mutation p.M217T 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-L5-A43J-01 1 104297180 104297180 A T AMY1C Missense_Mutation p.N313I 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 1 10725151 10725151 C A CASZ1 Missense_Mutation p.R165M 0.27 deleterious_low_confidence(0.01) benign(0.028) TCGA-L5-A43J-01 1 109811737 109811737 C - CELSR2 Frame_Shift_Del p.V2215Wfs*26 0.39 TCGA-L5-A43J-01 1 11008750 11008750 G A C1orf127 Missense_Mutation p.T481M 0.16 tolerated(0.11) probably_damaging(0.996) TCGA-L5-A43J-01 1 110163442 110163443 - A AMPD2 5'UTR 0.21 TCGA-L5-A43J-01 1 112999148 112999148 A G CTTNBP2NL Missense_Mutation p.Y345C 0.67 tolerated(0.17) benign(0.009) TCGA-L5-A43J-01 1 113239426 113239426 G A MOV10 Missense_Mutation p.G719D 0.28 tolerated(0.1) benign(0.161) TCGA-L5-A43J-01 1 115007001 115007001 A C TRIM33 Missense_Mutation p.I179R 0.19 deleterious(0) possibly_damaging(0.879) TCGA-L5-A43J-01 1 115168367 115168367 C T DENND2C Missense_Mutation p.G80D 0.44 tolerated(0.09) benign(0.007) TCGA-L5-A43J-01 1 116234551 116234551 A - VANGL1 3'UTR 0.31 TCGA-L5-A43J-01 1 1248015 1248015 C T CPSF3L Missense_Mutation p.V460I 0.27 tolerated(0.64) benign(0.064) TCGA-L5-A43J-01 1 148346596 148346596 T C NBPF20 Missense_Mutation p.Q54R 0.09 benign(0.001) TCGA-L5-A43J-01 1 149783804 149783806 CTT - HIST2H2BF In_Frame_Del p.K25del 0.27 TCGA-L5-A43J-01 1 150931756 150931756 G A SETDB1 Silent p.Q811Q 0.32 TCGA-L5-A43J-01 1 151220636 151220636 T - PIP5K1A 3'Flank 0.35 TCGA-L5-A43J-01 1 151377009 151377009 A - POGZ 3'UTR 0.71 TCGA-L5-A43J-01 1 152187979 152187979 G A HRNR Silent p.H2042H 0.12 TCGA-L5-A43J-01 1 15287271 15287271 G A KAZN Silent p.S106S 0.57 TCGA-L5-A43J-01 1 153914345 153914345 G A DENND4B Missense_Mutation p.A352V 0.33 deleterious(0) benign(0.059) TCGA-L5-A43J-01 1 153914758 153914758 G A DENND4B Missense_Mutation p.P239S 0.44 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 1 155007018 155007018 G - DCST1 Frame_Shift_Del p.L59Sfs*4 0.24 TCGA-L5-A43J-01 1 155100484 155100484 C A EFNA1 Missense_Mutation p.L11M 0.27 tolerated(0.11) possibly_damaging(0.714) TCGA-L5-A43J-01 1 155734981 155734981 G - GON4L Frame_Shift_Del p.P1428Qfs*70 0.17 TCGA-L5-A43J-01 1 155903598 155903598 G T KIAA0907 Silent p.L27L 0.43 TCGA-L5-A43J-01 1 156436230 156436230 C T MEF2D 3'UTR 0.53 TCGA-L5-A43J-01 1 158226752 158226752 T C CD1A Missense_Mutation p.Y261H 0.22 deleterious(0.05) benign(0.081) TCGA-L5-A43J-01 1 160183258 160183258 C A PEA15 Silent p.P125P 0.38 TCGA-L5-A43J-01 1 161179901 161179901 G T NDUFS2 Missense_Mutation p.D235Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 1 16375608 16375608 C - CLCNKB Intron 0.46 TCGA-L5-A43J-01 1 16451577 16451577 T A EPHA2 3'UTR 0.63 TCGA-L5-A43J-01 1 166818617 166818617 C T POGK Silent p.A267A 0.24 TCGA-L5-A43J-01 1 167734970 167734970 C G MPZL1 Missense_Mutation p.A81G 0.18 tolerated(0.27) benign(0.009) TCGA-L5-A43J-01 1 1683486 1683486 G A NADK 3'UTR 0.23 TCGA-L5-A43J-01 1 169101823 169101823 A G NME7 3'UTR 0.45 TCGA-L5-A43J-01 1 16945454 16945454 G A RP5-1182A14.5 3'Flank 0.07 TCGA-L5-A43J-01 1 17248507 17248507 C - CROCC 5'UTR 0.54 TCGA-L5-A43J-01 1 173526482 173526482 T C SLC9C2 Silent p.Q404Q 0.57 TCGA-L5-A43J-01 1 173703092 173703092 C A KLHL20 Silent p.A88A 0.52 TCGA-L5-A43J-01 1 173907542 173907542 T - RC3H1 3'UTR 0.36 TCGA-L5-A43J-01 1 175097224 175097224 C T TNN Silent p.G1034G 0.49 TCGA-L5-A43J-01 1 175360447 175360447 G - TNR Frame_Shift_Del p.P495Lfs*42 0.40 TCGA-L5-A43J-01 1 176526097 176526097 C T PAPPA2 Silent p.S213S 0.33 TCGA-L5-A43J-01 1 179041052 179041052 C T FAM20B Missense_Mutation p.R335W 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 1 179638527 179638527 C T TDRD5 Missense_Mutation p.P950S 0.38 tolerated(0.48) benign(0.004) TCGA-L5-A43J-01 1 181769317 181769317 C A CACNA1E 3'Flank 0.19 TCGA-L5-A43J-01 1 183599769 183599769 G A ARPC5 Missense_Mutation p.R77W 0.21 deleterious(0) possibly_damaging(0.782) TCGA-L5-A43J-01 1 185070204 185070204 T - RNF2 3'UTR 0.49 TCGA-L5-A43J-01 1 185151134 185151134 T A SWT1 Silent p.P361P 0.17 TCGA-L5-A43J-01 1 19441999 19441999 C A UBR4 Missense_Mutation p.Q3652H 0.63 probably_damaging(0.948) TCGA-L5-A43J-01 1 196392230 196392230 C T KCNT2 Missense_Mutation p.E379K 0.56 tolerated(0.09) probably_damaging(0.991) TCGA-L5-A43J-01 1 200145299 200145299 C T NR5A2 3'UTR 0.33 TCGA-L5-A43J-01 1 200870139 200870141 GGA - C1orf106 In_Frame_Del p.E126del 0.59 TCGA-L5-A43J-01 1 202560952 202560952 A G PPP1R12B 3'UTR 0.57 TCGA-L5-A43J-01 1 202574790 202574790 C T SYT2 Silent p.G37G 0.45 TCGA-L5-A43J-01 1 203008166 203008166 G - PPFIA4 Frame_Shift_Del p.D12Tfs*18 0.27 TCGA-L5-A43J-01 1 203316470 203316470 G - FMOD Frame_Shift_Del p.P310Qfs*31 0.19 TCGA-L5-A43J-01 1 203770937 203770946 TGGTTTTGAT GGTTTTGA ZC3H11A 5'UTR 0.12 TCGA-L5-A43J-01 1 205056864 205056865 - A RBBP5 3'UTR 0.27 TCGA-L5-A43J-01 1 206762574 206762574 A - RASSF5 3'Flank 0.26 TCGA-L5-A43J-01 1 20977076 20977076 G T PINK1 Missense_Mutation p.E546D 0.67 tolerated(0.46) benign(0.005) TCGA-L5-A43J-01 1 209880402 209880402 T - HSD11B1 Frame_Shift_Del p.V149Afs*2 0.47 TCGA-L5-A43J-01 1 211526639 211526639 G A TRAF5 Missense_Mutation p.G20S 0.25 tolerated(0.61) benign(0.003) TCGA-L5-A43J-01 1 220327392 220327392 T - RAB3GAP2 Frame_Shift_Del p.N1188Mfs*7 0.22 TCGA-L5-A43J-01 1 220837142 220837175 ATGTGTAGCCCCTTTTTAACCTAGTGTTCATTCA TGTGTAGCCCCTTTTTAACCTAGTGTTCATTC MARK1 3'Flank 0.22 TCGA-L5-A43J-01 1 220837175 220837175 A - MARK1 3'Flank 0.32 TCGA-L5-A43J-01 1 226075158 226075158 C T RP4-559A3.7 Missense_Mutation p.A335T 0.24 unknown(0) TCGA-L5-A43J-01 1 228333720 228333720 C T GUK1 Intron 0.59 TCGA-L5-A43J-01 1 228496835 228496835 G A OBSCN Missense_Mutation p.V5216M 0.19 benign(0.304) TCGA-L5-A43J-01 1 22903132 22903133 - CT EPHA8 Frame_Shift_Ins p.R198Sfs*22 0.23 TCGA-L5-A43J-01 1 22913109 22913109 G A EPHA8 Silent p.P320P 0.68 TCGA-L5-A43J-01 1 236141179 236141179 G A NID1 Silent p.I1244I 0.30 TCGA-L5-A43J-01 1 236399648 236399648 G A ERO1LB Missense_Mutation p.R186C 0.11 deleterious(0) probably_damaging(0.998) TCGA-L5-A43J-01 1 240638313 240638313 C T FMN2 3'UTR 0.39 TCGA-L5-A43J-01 1 247836052 247836052 G C OR13G1 Missense_Mutation p.L98V 0.15 tolerated(0.14) probably_damaging(0.991) TCGA-L5-A43J-01 1 29641996 29641996 C A PTPRU Missense_Mutation p.R1124S 0.69 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 1 33240337 33240339 CTT - KIAA1522 3'UTR 0.39 TCGA-L5-A43J-01 1 33562406 33562406 C T ADC Silent p.A284A 0.39 TCGA-L5-A43J-01 1 3424356 3424356 C T MEGF6 Intron 0.23 TCGA-L5-A43J-01 1 3519090 3519090 G A MEGF6 Missense_Mutation p.T69M 0.23 tolerated(1) benign(0.003) TCGA-L5-A43J-01 1 36642154 36642154 C T MAP7D1 Missense_Mutation p.P402L 0.65 benign(0.001) TCGA-L5-A43J-01 1 39789902 39789902 A G MACF1 Missense_Mutation p.K1430R 0.33 benign(0.171) TCGA-L5-A43J-01 1 39951776 39951776 G A MACF1 3'UTR 0.15 TCGA-L5-A43J-01 1 41282938 41282938 T - KCNQ4 Frame_Shift_Del p.L107Cfs*32 0.41 TCGA-L5-A43J-01 1 44054632 44054632 C T PTPRF Silent p.L304L 0.25 TCGA-L5-A43J-01 1 44432189 44432189 G - IPO13 Intron 0.26 TCGA-L5-A43J-01 1 45120337 45120337 C T TMEM53 Missense_Mutation p.R243H 0.27 tolerated(0.1) benign(0.022) TCGA-L5-A43J-01 1 46499903 46499903 A G MAST2 Missense_Mutation p.Q1278R 0.22 tolerated_low_confidence(0.41) benign(0.14) TCGA-L5-A43J-01 1 46501229 46501229 C A MAST2 Missense_Mutation p.L1630I 0.18 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-L5-A43J-01 1 46659217 46659217 C - POMGNT1 Intron 0.24 TCGA-L5-A43J-01 1 47100598 47100598 A - ATPAF1 3'UTR 0.62 TCGA-L5-A43J-01 1 47142712 47142712 T - EFCAB14 3'UTR 0.36 TCGA-L5-A43J-01 1 47550552 47550552 G A CYP4Z1 Missense_Mutation p.R225H 0.36 deleterious(0.02) probably_damaging(0.954) TCGA-L5-A43J-01 1 51210386 51210386 T - FAF1 Frame_Shift_Del p.G144Afs*13 0.34 TCGA-L5-A43J-01 1 55591178 55591178 C T USP24 Missense_Mutation p.D1259N 0.46 tolerated(0.13) benign(0.051) TCGA-L5-A43J-01 1 6158455 6158455 G A KCNAB2 Intron 0.35 TCGA-L5-A43J-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.45 TCGA-L5-A43J-01 1 6311533 6311533 C T GPR153 Missense_Mutation p.V282M 0.41 deleterious(0.02) probably_damaging(1) TCGA-L5-A43J-01 1 65306997 65306997 T - JAK1 Frame_Shift_Del p.K860Nfs*16 0.26 TCGA-L5-A43J-01 1 66098886 66098886 G A LEPR Intron 0.21 TCGA-L5-A43J-01 1 6694120 6694120 G A THAP3 3'Flank 0.14 TCGA-L5-A43J-01 1 74930383 74930383 A G FPGT-TNNI3K Intron 0.49 TCGA-L5-A43J-01 1 7846785 7846785 C T PER3 Silent p.N93N 0.22 TCGA-L5-A43J-01 1 79129487 79129487 A - IFI44 Frame_Shift_Del p.K444Nfs*17 0.24 TCGA-L5-A43J-01 1 84991635 84991635 T C SPATA1 RNA 0.19 TCGA-L5-A43J-01 1 85112953 85112953 T C SSX2IP 3'UTR 0.14 TCGA-L5-A43J-01 1 889215 889215 C T NOC2L Missense_Mutation p.V279M 0.33 tolerated(0.23) benign(0.223) TCGA-L5-A43J-01 1 8928104 8928104 T C ENO1 Missense_Mutation p.T85A 0.60 tolerated_low_confidence(0.12) benign(0) TCGA-L5-A43J-01 1 91381965 91381965 A T ZNF644 3'UTR 0.42 TCGA-L5-A43J-01 1 93682272 93682273 - A CCDC18 Frame_Shift_Ins p.N655Kfs*13 0.18 TCGA-L5-A43J-01 1 94019461 94019461 C T FNBP1L 3'UTR 0.27 TCGA-L5-A43J-01 1 94506867 94506867 G T ABCA4 Nonsense_Mutation p.C1140* 0.59 TCGA-L5-A43J-01 1 9642760 9642760 T - SLC25A33 3'UTR 0.45 TCGA-L5-A43J-01 1 9795218 9795219 - C CLSTN1 Frame_Shift_Ins p.A633Gfs*37 0.14 TCGA-L5-A43J-01 20 1293248 1293248 G A SDCBP2 Silent p.V181V 0.54 TCGA-L5-A43J-01 20 20013995 20013995 G C NAA20 3'UTR 0.07 TCGA-L5-A43J-01 20 20024273 20024273 G T CRNKL1 Missense_Mutation p.L440M 0.20 deleterious(0.01) probably_damaging(0.989) TCGA-L5-A43J-01 20 20351323 20351323 C T INSM1 3'UTR 0.32 TCGA-L5-A43J-01 20 23350283 23350283 C T GZF1 Missense_Mutation p.R564C 0.35 deleterious(0) probably_damaging(0.982) TCGA-L5-A43J-01 20 23352852 23352852 A - GZF1 3'UTR 0.17 TCGA-L5-A43J-01 20 30584487 30584487 G A XKR7 Missense_Mutation p.V323I 0.60 tolerated(0.32) possibly_damaging(0.903) TCGA-L5-A43J-01 20 30776958 30776958 A G PLAGL2 3'Flank 0.35 TCGA-L5-A43J-01 20 30783233 30783233 C T PLAGL2 3'UTR 0.57 TCGA-L5-A43J-01 20 30954215 30954215 T C ASXL1 Missense_Mutation p.M29T 0.45 deleterious(0) probably_damaging(0.972) TCGA-L5-A43J-01 20 31022442 31022442 G - ASXL1 Frame_Shift_Del p.G645Vfs*58 0.28 TCGA-L5-A43J-01 20 31876669 31876669 G A BPIFB1 Missense_Mutation p.V80I 0.43 tolerated(1) benign(0.007) TCGA-L5-A43J-01 20 32660107 32660107 A G RALY Missense_Mutation p.N76S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A43J-01 20 33346694 33346694 G - NCOA6 Frame_Shift_Del p.P186Rfs*9 0.24 TCGA-L5-A43J-01 20 33451230 33451230 C T GGT7 Silent p.A97A 0.55 TCGA-L5-A43J-01 20 33530434 33530435 - G GSS Intron 0.11 TCGA-L5-A43J-01 20 33565839 33565839 G A MYH7B Missense_Mutation p.A53T 0.27 possibly_damaging(0.776) TCGA-L5-A43J-01 20 33577720 33577720 G A MYH7B Missense_Mutation p.V631M 0.15 probably_damaging(0.959) TCGA-L5-A43J-01 20 34568534 34568534 C T CNBD2 Missense_Mutation p.R133C 0.45 deleterious(0.01) possibly_damaging(0.659) TCGA-L5-A43J-01 20 35220206 35220206 T C TGIF2 3'UTR 0.51 TCGA-L5-A43J-01 20 3631609 3631609 T - ATRN 3'UTR 0.35 TCGA-L5-A43J-01 20 3845276 3845276 T C MAVS Silent p.P333P 0.33 TCGA-L5-A43J-01 20 3888689 3888689 C T PANK2 Missense_Mutation p.R249W 0.31 deleterious(0.01) benign(0.38) TCGA-L5-A43J-01 20 43945485 43945485 C A RBPJL Missense_Mutation p.S480R 0.44 tolerated(0.1) benign(0.422) TCGA-L5-A43J-01 20 44108503 44108503 G - WFDC2 Intron 0.32 TCGA-L5-A43J-01 20 44639804 44639804 C T MMP9 Silent p.N224N 0.37 TCGA-L5-A43J-01 20 45000560 45000560 G T ELMO2 Missense_Mutation p.P489T 0.17 deleterious(0) probably_damaging(0.98) TCGA-L5-A43J-01 20 4679939 4679939 C T PRNP Missense_Mutation p.R25C 0.20 deleterious(0) probably_damaging(0.967) TCGA-L5-A43J-01 20 4708726 4708726 G A PRND 3'UTR 0.13 TCGA-L5-A43J-01 20 485835 485835 C T CSNK2A1 Missense_Mutation p.R47Q 0.20 deleterious(0.01) possibly_damaging(0.87) TCGA-L5-A43J-01 20 4913279 4913279 G A SLC23A2 5'UTR 0.31 TCGA-L5-A43J-01 20 49508204 49508204 T - ADNP Frame_Shift_Del p.K1016Rfs*11 0.49 TCGA-L5-A43J-01 20 50140068 50140068 C T NFATC2 Missense_Mutation p.V238M 0.50 tolerated(0.19) possibly_damaging(0.514) TCGA-L5-A43J-01 20 52184372 52184372 A - ZNF217 3'UTR 0.20 TCGA-L5-A43J-01 20 60737811 60737811 C T SS18L1 Missense_Mutation p.P127L 0.51 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A43J-01 20 61488860 61488860 A G TCFL5 Silent p.A375A 0.51 TCGA-L5-A43J-01 20 61524253 61524253 T C DIDO1 Missense_Mutation p.T1055A 0.35 benign(0.06) TCGA-L5-A43J-01 20 61827084 61827084 G A YTHDF1 3'UTR 0.19 TCGA-L5-A43J-01 20 62055548 62055548 G - KCNQ2 Frame_Shift_Del p.P410Rfs*30 0.27 TCGA-L5-A43J-01 20 62193250 62193251 - G HELZ2 Frame_Shift_Ins p.R2206Pfs*42 0.22 TCGA-L5-A43J-01 20 62195615 62195615 C T HELZ2 Silent p.A1520A 0.35 TCGA-L5-A43J-01 20 62494101 62494101 C T ABHD16B Missense_Mutation p.A403V 0.14 tolerated(0.05) benign(0.03) TCGA-L5-A43J-01 20 9460648 9460648 A C PLCB4 3'UTR 0.11 TCGA-L5-A43J-01 20 9460657 9460658 - TA PLCB4 3'UTR 0.55 TCGA-L5-A43J-01 21 31655068 31655068 G A KRTAP24-1 Silent p.C61C 0.69 TCGA-L5-A43J-01 21 35476637 35476639 TTC - SLC5A3 3'UTR 0.57 TCGA-L5-A43J-01 21 36206863 36206863 C T RUNX1 Missense_Mutation p.G217R 0.34 deleterious(0.02) probably_damaging(0.948) TCGA-L5-A43J-01 21 44839827 44839827 C T SIK1 Missense_Mutation p.R344Q 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-L5-A43J-01 21 45947292 45947292 T G TSPEAR Silent p.T344T 0.77 TCGA-L5-A43J-01 21 47858171 47858173 AGA - PCNT In_Frame_Del p.K3066del 0.66 TCGA-L5-A43J-01 22 16256520 16256520 T - POTEH 3'UTR 0.13 TCGA-L5-A43J-01 22 18300311 18300311 G A MICAL3 Missense_Mutation p.R1706C 0.43 benign(0.009) TCGA-L5-A43J-01 22 18376579 18376579 C T MICAL3 Missense_Mutation p.R514H 0.21 probably_damaging(0.985) TCGA-L5-A43J-01 22 19961708 19961708 G A ARVCF Missense_Mutation p.T672M 0.47 deleterious(0.01) probably_damaging(0.987) TCGA-L5-A43J-01 22 20077689 20077689 C T DGCR8 Missense_Mutation p.P405L 0.53 tolerated(0.46) benign(0) TCGA-L5-A43J-01 22 20303643 20303643 T A DGCR6L Missense_Mutation p.E124V 0.33 deleterious(0.01) possibly_damaging(0.697) TCGA-L5-A43J-01 22 21147531 21147531 C T PI4KA Missense_Mutation p.A760T 0.22 tolerated(0.06) possibly_damaging(0.677) TCGA-L5-A43J-01 22 21347194 21347194 G A LZTR1 Splice_Site p.X420_splice 0.41 TCGA-L5-A43J-01 22 21803715 21803715 A - HIC2 3'UTR 0.20 TCGA-L5-A43J-01 22 22287853 22287853 G A PPM1F Silent p.R219R 0.49 TCGA-L5-A43J-01 22 24041155 24041155 G C RGL4 3'UTR 0.37 TCGA-L5-A43J-01 22 24984229 24984229 C T FAM211B Silent p.S125S 0.42 TCGA-L5-A43J-01 22 26224901 26224901 G A MYO18B Missense_Mutation p.R982Q 0.46 deleterious(0.03) benign(0.16) TCGA-L5-A43J-01 22 26884176 26884176 C T SRRD Silent p.Y144Y 0.39 TCGA-L5-A43J-01 22 29451191 29451191 T - ZNRF3 3'UTR 0.48 TCGA-L5-A43J-01 22 29693886 29693886 G - EWSR1 Frame_Shift_Del p.G461Vfs*170 0.16 TCGA-L5-A43J-01 22 29694848 29694848 G A EWSR1 Missense_Mutation p.V520I 0.44 tolerated(0.27) unknown(0) TCGA-L5-A43J-01 22 31011717 31011717 G A TCN2 Missense_Mutation p.V295I 0.35 tolerated(0.13) benign(0.365) TCGA-L5-A43J-01 22 35949225 35949225 G A RASD2 3'UTR 0.56 TCGA-L5-A43J-01 22 36684430 36684430 G A MYH9 Silent p.D1600D 0.15 TCGA-L5-A43J-01 22 36960232 36960233 - T CACNG2 3'UTR 0.14 TCGA-L5-A43J-01 22 38373971 38373971 G A SOX10 Silent p.T200T 0.28 TCGA-L5-A43J-01 22 38474461 38474461 G A SLC16A8 Silent p.S483S 0.22 TCGA-L5-A43J-01 22 39078977 39078977 A G TOMM22 Silent p.Q110Q 0.21 TCGA-L5-A43J-01 22 39218069 39218069 G C NPTXR 3'UTR 0.24 TCGA-L5-A43J-01 22 40722032 40722032 A - TNRC6B 3'UTR 0.48 TCGA-L5-A43J-01 22 42608248 42608248 G A TCF20 Missense_Mutation p.R1022W 0.13 probably_damaging(0.999) TCGA-L5-A43J-01 22 42776810 42776811 - G NFAM1 3'UTR 0.50 TCGA-L5-A43J-01 22 42910203 42910203 G A RRP7A Silent p.S222S 0.29 TCGA-L5-A43J-01 22 43570300 43570300 C G TTLL12 Missense_Mutation p.E382Q 0.40 tolerated(0.28) benign(0.069) TCGA-L5-A43J-01 22 45312251 45312251 C T PHF21B Missense_Mutation p.S158N 0.30 tolerated_low_confidence(0.13) possibly_damaging(0.488) TCGA-L5-A43J-01 22 46655330 46655330 C T PKDREJ Missense_Mutation p.R1297H 0.40 deleterious(0.05) possibly_damaging(0.8) TCGA-L5-A43J-01 22 46931227 46931227 C - CELSR1 Frame_Shift_Del p.G614Afs*54 0.33 TCGA-L5-A43J-01 22 47062721 47062721 G - GRAMD4 Splice_Site p.X271_splice 0.25 TCGA-L5-A43J-01 22 49290904 49290904 G - WI2-81516E3.1 RNA 0.33 TCGA-L5-A43J-01 22 50278015 50278017 CTC - ZBED4 In_Frame_Del p.S237del 0.11 TCGA-L5-A43J-01 22 50281996 50281996 A G ZBED4 3'UTR 0.30 TCGA-L5-A43J-01 22 50656444 50656444 C - TUBGCP6 Frame_Shift_Del p.P1759Lfs*33 0.39 TCGA-L5-A43J-01 22 50944625 50944625 C T LMF2 Missense_Mutation p.E205K 0.31 deleterious(0) probably_damaging(0.973) TCGA-L5-A43J-01 22 51171214 51171214 A - SHANK3 3'UTR 0.29 TCGA-L5-A43J-01 2 101598834 101598834 G A NPAS2 Missense_Mutation p.V542I 0.44 tolerated(0.39) benign(0.005) TCGA-L5-A43J-01 2 102456423 102456423 A G MAP4K4 Missense_Mutation p.I306V 0.39 deleterious_low_confidence(0) unknown(0) TCGA-L5-A43J-01 2 10923488 10923488 A T ATP6V1C2 3'UTR 0.35 TCGA-L5-A43J-01 2 119739053 119739053 A G MARCO Missense_Mutation p.K279E 0.18 deleterious(0.01) probably_damaging(0.973) TCGA-L5-A43J-01 2 121052255 121052255 T - RALB 3'UTR 0.34 TCGA-L5-A43J-01 2 122125240 122125240 T C CLASP1 Silent p.S1270S 0.32 TCGA-L5-A43J-01 2 125547549 125547549 G A CNTNAP5 Missense_Mutation p.M940I 0.21 deleterious(0.04) benign(0) TCGA-L5-A43J-01 2 127825800 127825801 - G BIN1 Frame_Shift_Ins p.Q184Pfs*16 0.41 TCGA-L5-A43J-01 2 128088010 128088017 CATATGAA - MAP3K2 Frame_Shift_Del p.I110Kfs*17 0.41 TCGA-L5-A43J-01 2 12881399 12881399 A - TRIB2 3'UTR 0.29 TCGA-L5-A43J-01 2 128900742 128900742 G A UGGT1 Silent p.P598P 0.28 TCGA-L5-A43J-01 2 130737406 130737406 G A RAB6C 5'UTR 0.22 TCGA-L5-A43J-01 2 132236889 132236889 C T TUBA3D Missense_Mutation p.R79C 0.14 deleterious_low_confidence(0.02) benign(0.019) TCGA-L5-A43J-01 2 133489420 133489420 T G NCKAP5 Missense_Mutation p.D1778A 0.34 deleterious(0.03) probably_damaging(0.917) TCGA-L5-A43J-01 2 133539753 133539753 T A NCKAP5 Missense_Mutation p.N1544I 0.14 tolerated(0.34) probably_damaging(0.967) TCGA-L5-A43J-01 2 133540491 133540491 C T NCKAP5 Missense_Mutation p.R1298H 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 2 135763096 135763096 G A MAP3K19 Silent p.F48F 0.43 TCGA-L5-A43J-01 2 136437868 136437868 T C R3HDM1 Silent p.I776I 0.18 TCGA-L5-A43J-01 2 139329588 139329588 C T SPOPL 3'UTR 0.38 TCGA-L5-A43J-01 2 145156467 145156467 G A ZEB2 Missense_Mutation p.P763S 0.41 tolerated(0.63) benign(0) TCGA-L5-A43J-01 2 148677866 148677866 G A ACVR2A Missense_Mutation p.A344T 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 2 148683686 148683686 A - ACVR2A Frame_Shift_Del p.K437Rfs*5 0.32 TCGA-L5-A43J-01 2 149854978 149854978 G A KIF5C Missense_Mutation p.R722Q 0.41 deleterious(0.02) probably_damaging(1) TCGA-L5-A43J-01 2 150071273 150071273 A - LYPD6B 3'UTR 0.46 TCGA-L5-A43J-01 2 152293790 152293790 T - RIF1 Frame_Shift_Del p.S472Pfs*34 0.30 TCGA-L5-A43J-01 2 152410372 152410372 G A NEB Silent p.H6532H 0.28 TCGA-L5-A43J-01 2 1544474 1544474 C A TPO Silent p.A909A 0.43 TCGA-L5-A43J-01 2 157407142 157407142 T C GPD2 Silent p.C285C 0.43 TCGA-L5-A43J-01 2 159035476 159035476 C T CCDC148 Missense_Mutation p.R468H 0.30 deleterious(0.02) probably_damaging(0.923) TCGA-L5-A43J-01 2 159537313 159537313 T - PKP4 3'UTR 0.48 TCGA-L5-A43J-01 2 160050800 160050800 C T TANC1 Silent p.N925N 0.24 TCGA-L5-A43J-01 2 163055317 163055317 T C FAP Missense_Mutation p.Y451C 0.29 tolerated(0.07) probably_damaging(1) TCGA-L5-A43J-01 2 164465713 164465713 C T FIGN 3'UTR 0.21 TCGA-L5-A43J-01 2 166731124 166731124 T C TTC21B 3'UTR 0.23 TCGA-L5-A43J-01 2 166781085 166781085 A T TTC21B Missense_Mutation p.L497Q 0.40 tolerated(0.05) probably_damaging(0.982) TCGA-L5-A43J-01 2 168107566 168107566 C T XIRP2 Missense_Mutation p.R3222C 0.21 probably_damaging(1) TCGA-L5-A43J-01 2 170551051 170551051 A G PHOSPHO2 5'UTR 0.38 TCGA-L5-A43J-01 2 171371459 171371459 A G MYO3B Silent p.P1133P 0.41 TCGA-L5-A43J-01 2 173335732 173335733 - T ITGA6 Frame_Shift_Ins p.D228* 0.22 TCGA-L5-A43J-01 2 176984427 176984427 A - HOXD10 3'UTR 0.42 TCGA-L5-A43J-01 2 178095075 178095075 A - NFE2L2 3'UTR 0.32 TCGA-L5-A43J-01 2 179445156 179445156 G A TTN Missense_Mutation p.T22317I 0.38 TCGA-L5-A43J-01 2 179584079 179584079 G A TTN Missense_Mutation p.P8013L 0.52 TCGA-L5-A43J-01 2 184023093 184023093 T - NUP35 Frame_Shift_Del p.F232Lfs*6 0.13 TCGA-L5-A43J-01 2 186671157 186671157 C - FSIP2 Frame_Shift_Del p.P5799Qfs*6 0.31 TCGA-L5-A43J-01 2 187521085 187521085 G - ITGAV Frame_Shift_Del p.G561Dfs*2 0.30 TCGA-L5-A43J-01 2 187545514 187545514 T A ITGAV 3'UTR 0.28 TCGA-L5-A43J-01 2 18764147 18764147 G A NT5C1B Silent p.S396S 0.48 TCGA-L5-A43J-01 2 190626331 190626331 A - OSGEPL1 Frame_Shift_Del p.F12Lfs*12 0.42 TCGA-L5-A43J-01 2 197653994 197653994 C T GTF3C3 Missense_Mutation p.R276H 0.06 tolerated(0.1) benign(0.133) TCGA-L5-A43J-01 2 1983001 1983001 T G MYT1L Splice_Site p.X30_splice 0.15 TCGA-L5-A43J-01 2 203684413 203684413 C T ICA1L Intron 0.48 TCGA-L5-A43J-01 2 207174428 207174428 A - ZDBF2 Frame_Shift_Del p.K1728Nfs*5 0.50 TCGA-L5-A43J-01 2 210561667 210561667 A - MAP2 Frame_Shift_Del p.T1474Qfs*14 0.10 TCGA-L5-A43J-01 2 210595271 210595271 A - MAP2 3'UTR 0.32 TCGA-L5-A43J-01 2 212248355 212248355 C - ERBB4 Frame_Shift_Del p.N1305Ifs*57 0.20 TCGA-L5-A43J-01 2 21234423 21234425 TGT - APOB In_Frame_Del p.N1772del 0.13 TCGA-L5-A43J-01 2 21260129 21260129 T C APOB Splice_Site p.X180_splice 0.50 TCGA-L5-A43J-01 2 217234779 217234779 G - MARCH4 Frame_Shift_Del p.Q69Sfs*90 0.55 TCGA-L5-A43J-01 2 217300166 217300168 CTT - SMARCAL1 In_Frame_Del p.L532del 0.44 TCGA-L5-A43J-01 2 219000454 219000454 C - CXCR2 Frame_Shift_Del p.L312Sfs*18 0.33 TCGA-L5-A43J-01 2 219135295 219135296 - G PNKD Frame_Shift_Ins p.A15Gfs*17 0.24 TCGA-L5-A43J-01 2 219222406 219222406 G A C2orf62 Missense_Mutation p.A90T 0.25 deleterious(0) probably_damaging(0.965) TCGA-L5-A43J-01 2 219674399 219674399 C T CYP27A1 Missense_Mutation p.R119W 0.37 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 2 220333698 220333698 A T SPEG Missense_Mutation p.N1140I 0.39 probably_damaging(0.976) TCGA-L5-A43J-01 2 220415144 220415144 G - TMEM198 3'UTR 0.35 TCGA-L5-A43J-01 2 224623241 224623241 T - AP1S3 3'UTR 0.31 TCGA-L5-A43J-01 2 228131180 228131180 G T COL4A3 Missense_Mutation p.G455C 0.43 probably_damaging(1) TCGA-L5-A43J-01 2 228884465 228884465 C T SPHKAP Missense_Mutation p.G369R 0.34 tolerated(0.47) benign(0.062) TCGA-L5-A43J-01 2 230222652 230222652 C T DNER 3'UTR 0.26 TCGA-L5-A43J-01 2 231931656 231931656 A G PSMD1 Missense_Mutation p.E114G 0.30 tolerated(0.2) benign(0.003) TCGA-L5-A43J-01 2 232326385 232326393 TCATCCTCC - NCL In_Frame_Del p.E157_D159del 0.29 TCGA-L5-A43J-01 2 233245388 233245388 C T ALPP Silent p.D307D 0.20 TCGA-L5-A43J-01 2 233393037 233393037 C - CHRND Frame_Shift_Del p.P105Rfs*77 0.24 TCGA-L5-A43J-01 2 235402410 235402410 T - ARL4C 3'UTR 0.35 TCGA-L5-A43J-01 2 237240170 237240170 C T IQCA1 Silent p.A735A 0.33 TCGA-L5-A43J-01 2 238232746 238232747 CA - COL6A3 3'UTR 0.19 TCGA-L5-A43J-01 2 239049639 239049639 G A KLHL30 Missense_Mutation p.A82T 0.47 tolerated(0.53) benign(0.311) TCGA-L5-A43J-01 2 240002800 240002800 G A HDAC4 Missense_Mutation p.A909V 0.36 deleterious(0.03) possibly_damaging(0.835) TCGA-L5-A43J-01 2 240036830 240036830 G A HDAC4 Silent p.S565S 0.14 TCGA-L5-A43J-01 2 242035595 242035595 G A MTERFD2 Missense_Mutation p.R322W 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A43J-01 2 242814375 242814375 C - CXXC11 Frame_Shift_Del p.P225Lfs*8 0.34 TCGA-L5-A43J-01 2 243056848 243056848 A - AC093642.5 RNA 0.25 TCGA-L5-A43J-01 2 24991841 24991841 T - NCOA1 3'UTR 0.29 TCGA-L5-A43J-01 2 26101215 26101215 G - ASXL2 5'UTR 0.24 TCGA-L5-A43J-01 2 26535919 26535919 C T GPR113 Silent p.A515A 0.34 TCGA-L5-A43J-01 2 26684619 26684619 C T OTOF Silent p.A1826A 0.34 TCGA-L5-A43J-01 2 27858031 27858031 A G GPN1 Missense_Mutation p.I166V 0.43 tolerated(0.83) benign(0.009) TCGA-L5-A43J-01 2 27917513 27917513 A G SLC4A1AP Missense_Mutation p.D785G 0.29 deleterious(0) possibly_damaging(0.735) TCGA-L5-A43J-01 2 30382103 30382103 T - YPEL5 3'UTR 0.36 TCGA-L5-A43J-01 2 3464042 3464042 C T TRAPPC12 Missense_Mutation p.R538W 0.36 deleterious(0) possibly_damaging(0.676) TCGA-L5-A43J-01 2 42490438 42490438 T C EML4 Silent p.T211T 0.29 TCGA-L5-A43J-01 2 42557121 42557121 A G EML4 Missense_Mutation p.N907S 0.48 tolerated_low_confidence(0.66) benign(0.001) TCGA-L5-A43J-01 2 42671596 42671596 C T KCNG3 Silent p.T263T 0.15 TCGA-L5-A43J-01 2 45171872 45171872 C T SIX3 Silent p.T324T 0.43 TCGA-L5-A43J-01 2 46414855 46414855 A - PRKCE 3'UTR 0.38 TCGA-L5-A43J-01 2 46986468 46986468 A G SOCS5 Missense_Mutation p.R267G 0.48 tolerated(0.09) possibly_damaging(0.533) TCGA-L5-A43J-01 2 48686995 48686995 G A PPP1R21 Missense_Mutation p.G160S 0.15 tolerated(0.47) benign(0.02) TCGA-L5-A43J-01 2 54483060 54483060 C T TSPYL6 Missense_Mutation p.A77T 0.19 tolerated(0.05) benign(0.085) TCGA-L5-A43J-01 2 55252408 55252408 A G RTN4 Missense_Mutation p.S943P 0.11 tolerated(0.46) benign(0.003) TCGA-L5-A43J-01 2 5838410 5838410 T - SOX11 3'UTR 0.29 TCGA-L5-A43J-01 2 60684502 60684502 A - BCL11A 3'UTR 0.49 TCGA-L5-A43J-01 2 61406203 61406203 C T AHSA2 5'UTR 0.33 TCGA-L5-A43J-01 2 61462997 61462998 TA - USP34 Frame_Shift_Del p.N2338Kfs*6 0.12 TCGA-L5-A43J-01 2 70166271 70166271 T - MXD1 3'UTR 0.46 TCGA-L5-A43J-01 2 70387883 70387883 G A C2orf42 Nonsense_Mutation p.R464* 0.43 TCGA-L5-A43J-01 2 70442603 70442603 G A TIA1 Missense_Mutation p.A263V 0.39 deleterious(0.02) probably_damaging(0.934) TCGA-L5-A43J-01 2 70674501 70674501 T A TGFA 3'UTR 0.43 TCGA-L5-A43J-01 2 71160174 71160174 C - VAX2 Frame_Shift_Del p.P240Hfs*36 0.37 TCGA-L5-A43J-01 2 73461425 73461425 T C CCT7 5'UTR 0.38 TCGA-L5-A43J-01 2 73477474 73477474 A G CCT7 Missense_Mutation p.T371A 0.42 deleterious(0) probably_damaging(0.989) TCGA-L5-A43J-01 2 73478542 73478542 G A CCT7 Silent p.L464L 0.36 TCGA-L5-A43J-01 2 74326650 74326652 AGA - TET3 In_Frame_Del p.K1040del 0.42 TCGA-L5-A43J-01 2 74328621 74328621 C T TET3 Missense_Mutation p.A1434V 0.18 tolerated(0.05) benign(0.077) TCGA-L5-A43J-01 2 74437167 74437167 C T MTHFD2 Missense_Mutation p.R221C 0.29 tolerated(0.1) benign(0.052) TCGA-L5-A43J-01 2 74782459 74782459 C - DOK1 Frame_Shift_Del p.P82Lfs*76 0.33 TCGA-L5-A43J-01 2 80530816 80530816 G A LRRTM1 Silent p.C43C 0.21 TCGA-L5-A43J-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.45 TCGA-L5-A43J-01 2 89103911 89103911 T G ANKRD36BP2 RNA 0.26 TCGA-L5-A43J-01 2 9491025 9491025 G A ASAP2 Splice_Site p.X371_splice 0.48 TCGA-L5-A43J-01 2 97475532 97475532 T - CNNM4 3'UTR 0.15 TCGA-L5-A43J-01 2 99695219 99695219 G T TSGA10 Missense_Mutation p.T262N 0.42 deleterious(0.01) possibly_damaging(0.777) TCGA-L5-A43J-01 2 99758247 99758247 C A C2ORF15 5'UTR 0.21 TCGA-L5-A43J-01 3 101311692 101311692 T - PCNP 3'UTR 0.24 TCGA-L5-A43J-01 3 101312475 101312476 AA - PCNP 3'UTR 0.50 TCGA-L5-A43J-01 3 101484459 101484459 T - CEP97 3'UTR 0.34 TCGA-L5-A43J-01 3 10369568 10369568 G A ATP2B2 3'UTR 0.61 TCGA-L5-A43J-01 3 112358576 112358576 G A CCDC80 Silent p.R59R 0.36 TCGA-L5-A43J-01 3 112693701 112693701 G T CD200R1 Missense_Mutation p.L2I 0.30 tolerated(0.39) benign(0.125) TCGA-L5-A43J-01 3 113368347 113368347 T - KIAA2018 3'UTR 0.38 TCGA-L5-A43J-01 3 124438073 124438073 G C RP11-71H17.7 5'Flank 0.36 TCGA-L5-A43J-01 3 124733606 124733606 G A HEG1 Intron 0.33 TCGA-L5-A43J-01 3 125647977 125647977 G A ALG1L 3'Flank 0.46 TCGA-L5-A43J-01 3 126071107 126071107 A G KLF15 Missense_Mutation p.L220S 0.43 deleterious(0) probably_damaging(0.964) TCGA-L5-A43J-01 3 12625385 12625385 C T RAF1 3'UTR 0.35 TCGA-L5-A43J-01 3 133379900 133379900 A - TOPBP1 Frame_Shift_Del p.F24Lfs*7 0.34 TCGA-L5-A43J-01 3 134076011 134076011 A - AMOTL2 3'UTR 0.46 TCGA-L5-A43J-01 3 134978479 134978479 A G EPHB1 3'UTR 0.26 TCGA-L5-A43J-01 3 13679189 13679189 G A FBLN2 Missense_Mutation p.A1156T 0.75 tolerated(0.08) benign(0.3) TCGA-L5-A43J-01 3 137811298 137811299 - C DZIP1L Frame_Shift_Ins p.E266Gfs*4 0.24 TCGA-L5-A43J-01 3 137965245 137965246 - AT ARMC8 Intron 0.31 TCGA-L5-A43J-01 3 14530420 14530420 T - SLC6A6 3'UTR 0.42 TCGA-L5-A43J-01 3 146239638 146239640 ACA - PLSCR1 In_Frame_Del p.C186del 0.18 TCGA-L5-A43J-01 3 147132838 147132838 C T ZIC1 3'UTR 0.20 TCGA-L5-A43J-01 3 151150682 151150682 T - MED12L 3'UTR 0.11 TCGA-L5-A43J-01 3 157161191 157161191 A - PTX3 3'UTR 0.39 TCGA-L5-A43J-01 3 15765962 15765962 T C ANKRD28 Missense_Mutation p.Y207C 0.70 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A43J-01 3 169988209 169988209 C T PRKCI Missense_Mutation p.R151C 0.29 deleterious(0.04) probably_damaging(0.938) TCGA-L5-A43J-01 3 170606437 170606437 T C EIF5A2 3'UTR 0.34 TCGA-L5-A43J-01 3 172096210 172096210 C - FNDC3B Frame_Shift_Del p.T1056Pfs*7 0.27 TCGA-L5-A43J-01 3 172098807 172098807 C T FNDC3B Missense_Mutation p.T1076M 0.10 tolerated(0.21) benign(0.105) TCGA-L5-A43J-01 3 176740814 176740814 A - TBL1XR1 3'UTR 0.38 TCGA-L5-A43J-01 3 180705810 180705810 C T DNAJC19 Splice_Site p.X43_splice 0.23 TCGA-L5-A43J-01 3 182635844 182635844 C T ATP11B Silent p.N1162N 0.09 TCGA-L5-A43J-01 3 182661936 182661936 A - DCUN1D1 3'UTR 0.27 TCGA-L5-A43J-01 3 182989418 182989418 T - B3GNT5 3'UTR 0.27 TCGA-L5-A43J-01 3 183854553 183854553 T - EIF2B5 Intron 0.21 TCGA-L5-A43J-01 3 18390354 18390354 A - SATB1 3'UTR 0.70 TCGA-L5-A43J-01 3 184064408 184064408 C T CLCN2 Missense_Mutation p.D895N 0.21 deleterious(0.04) benign(0.041) TCGA-L5-A43J-01 3 185361566 185361566 T C IGF2BP2 3'UTR 0.13 TCGA-L5-A43J-01 3 185635349 185635349 G T TRA2B 3'UTR 0.30 TCGA-L5-A43J-01 3 185823652 185823652 G A ETV5 Silent p.D2D 0.13 TCGA-L5-A43J-01 3 189614077 189614077 T - TP63 3'UTR 0.21 TCGA-L5-A43J-01 3 195778941 195778941 G A TFRC Missense_Mutation p.R719C 0.12 tolerated(0.14) probably_damaging(0.973) TCGA-L5-A43J-01 3 22413997 22413997 G A ZNF385D RNA 0.54 TCGA-L5-A43J-01 3 23848848 23848850 AAG - UBE2E1 In_Frame_Del p.K32del 0.62 TCGA-L5-A43J-01 3 28283209 28283209 C G CMC1 5'UTR 0.50 TCGA-L5-A43J-01 3 32933735 32933735 A - TRIM71 3'UTR 0.44 TCGA-L5-A43J-01 3 43074481 43074481 T C FAM198A Silent p.C242C 0.63 TCGA-L5-A43J-01 3 46307343 46307343 A - CCR3 Frame_Shift_Del p.K255Sfs*52 0.62 TCGA-L5-A43J-01 3 49210244 49210244 C - KLHDC8B Frame_Shift_Del p.M17Cfs*59 0.26 TCGA-L5-A43J-01 3 49721799 49721799 C T MST1 Missense_Mutation p.R655Q 0.82 tolerated(0.39) benign(0.004) TCGA-L5-A43J-01 3 50222192 50222192 C T SEMA3F Silent p.A467A 0.55 TCGA-L5-A43J-01 3 50332292 50332292 G A HYAL3 Missense_Mutation p.P248S 0.35 tolerated(0.1) probably_damaging(0.999) TCGA-L5-A43J-01 3 50362462 50362462 A - TUSC2 3'UTR 0.29 TCGA-L5-A43J-01 3 51980259 51980259 C T PARP3 Silent p.A399A 0.38 TCGA-L5-A43J-01 3 52257989 52257989 C T TLR9 Missense_Mutation p.E269K 0.07 deleterious(0.02) possibly_damaging(0.715) TCGA-L5-A43J-01 3 52397145 52397145 G T DNAH1 Missense_Mutation p.E1743D 0.45 probably_damaging(0.999) TCGA-L5-A43J-01 3 53920927 53920927 T - SELK Frame_Shift_Del p.R49Efs*51 0.39 TCGA-L5-A43J-01 3 57293965 57293965 C T APPL1 Missense_Mutation p.R526C 0.63 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 3 68055751 68055751 C A FAM19A1 Intron 0.81 TCGA-L5-A43J-01 3 69072373 69072373 C T TMF1 Missense_Mutation p.M1079I 0.48 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 3 86990336 86990336 A - VGLL3 3'UTR 0.61 TCGA-L5-A43J-01 3 88192557 88192557 A - ZNF654 3'UTR 0.52 TCGA-L5-A43J-01 3 93772140 93772140 G A ARL13B 3'UTR 0.20 TCGA-L5-A43J-01 3 9785476 9785476 G A BRPF1 Silent p.R842R 0.26 TCGA-L5-A43J-01 3 98516120 98516120 A - DCBLD2 3'UTR 0.80 TCGA-L5-A43J-01 4 100340170 100340170 G A ADH7 Missense_Mutation p.R332C 0.30 deleterious(0.03) benign(0.017) TCGA-L5-A43J-01 4 104115550 104115550 G A CENPE Missense_Mutation p.S203F 0.72 probably_damaging(1) TCGA-L5-A43J-01 4 110670692 110670692 C T CFI Missense_Mutation p.R336Q 0.37 deleterious(0) probably_damaging(0.922) TCGA-L5-A43J-01 4 113539992 113539992 T A C4orf21 Silent p.V402V 0.31 TCGA-L5-A43J-01 4 114293761 114293761 C T ANK2 Intron 0.16 TCGA-L5-A43J-01 4 120484001 120484001 T C PDE5A Missense_Mutation p.D373G 0.20 deleterious(0.03) probably_damaging(0.963) TCGA-L5-A43J-01 4 122746918 122746918 T C BBS7 3'UTR 0.38 TCGA-L5-A43J-01 4 123131023 123131023 A T KIAA1109 Missense_Mutation p.D661V 0.36 possibly_damaging(0.821) TCGA-L5-A43J-01 4 123342535 123342535 A G ADAD1 Missense_Mutation p.H536R 0.27 tolerated(0.52) benign(0.05) TCGA-L5-A43J-01 4 123855285 123855285 A G SPATA5 Missense_Mutation p.Y180C 0.33 tolerated(0.16) possibly_damaging(0.765) TCGA-L5-A43J-01 4 128949844 128949844 G A C4orf29 Missense_Mutation p.R305H 0.31 tolerated(0.15) benign(0.116) TCGA-L5-A43J-01 4 1332301 1332301 G A MAEA Missense_Mutation p.A331T 0.45 deleterious(0) probably_damaging(0.985) TCGA-L5-A43J-01 4 13606084 13606084 T C BOD1L1 Missense_Mutation p.I814V 0.69 possibly_damaging(0.729) TCGA-L5-A43J-01 4 1388569 1388569 C T CRIPAK Silent p.A90A 0.17 TCGA-L5-A43J-01 4 139979169 139979169 A G ELF2 3'UTR 0.50 TCGA-L5-A43J-01 4 139979170 139979170 G A ELF2 3'UTR 0.57 TCGA-L5-A43J-01 4 141302186 141302186 A G SCOC Silent p.G136G 0.22 TCGA-L5-A43J-01 4 145580090 145580090 G T HHIP Missense_Mutation p.E207D 0.29 tolerated(0.46) benign(0.007) TCGA-L5-A43J-01 4 15060881 15060881 G A CPEB2 Missense_Mutation p.R884Q 0.20 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-L5-A43J-01 4 155253834 155253834 T C DCHS2 Missense_Mutation p.T677A 0.25 tolerated(0.17) benign(0.001) TCGA-L5-A43J-01 4 155525918 155525918 A - FGG 3'UTR 0.30 TCGA-L5-A43J-01 4 156281335 156281335 T G MAP9 Silent p.A345A 0.29 TCGA-L5-A43J-01 4 159554592 159554592 C T RXFP1 Missense_Mutation p.P312L 0.28 deleterious(0.03) benign(0.004) TCGA-L5-A43J-01 4 160260486 160260486 C T RAPGEF2 Silent p.D677D 0.23 TCGA-L5-A43J-01 4 165878447 165878447 C A FAM218A Silent p.R91R 0.52 TCGA-L5-A43J-01 4 170315420 170315420 T C NEK1 3'UTR 0.24 TCGA-L5-A43J-01 4 173150833 173150833 G A GALNTL6 Silent p.G55G 0.36 TCGA-L5-A43J-01 4 176555452 176555453 TT - GPM6A 3'UTR 0.19 TCGA-L5-A43J-01 4 177632776 177632777 - GA VEGFC Frame_Shift_Ins p.Q194Lfs*7 0.29 TCGA-L5-A43J-01 4 186244914 186244914 A - SNX25 Frame_Shift_Del p.K407Nfs*6 0.20 TCGA-L5-A43J-01 4 186380035 186380035 A G CCDC110 Missense_Mutation p.I569T 0.33 tolerated(0.18) benign(0.062) TCGA-L5-A43J-01 4 186541266 186541266 T C SORBS2 Missense_Mutation p.D948G 0.17 deleterious(0.01) benign(0.01) TCGA-L5-A43J-01 4 22414846 22414846 T C GPR125 Missense_Mutation p.T731A 0.15 tolerated(0.11) benign(0.02) TCGA-L5-A43J-01 4 2251851 2251854 CCTT - MXD4 3'UTR 0.51 TCGA-L5-A43J-01 4 23796668 23796668 A - PPARGC1A 3'UTR 0.30 TCGA-L5-A43J-01 4 3432792 3432792 C T RGS12 Intron 0.83 TCGA-L5-A43J-01 4 3589709 3589709 G T LINC00955 Missense_Mutation p.W26L 0.30 tolerated_low_confidence(0.23) possibly_damaging(0.514) TCGA-L5-A43J-01 4 39230210 39230212 AAC - WDR19 In_Frame_Del p.N629del 0.15 TCGA-L5-A43J-01 4 39501756 39501756 G A UGDH 3'UTR 0.11 TCGA-L5-A43J-01 4 4237303 4237303 A - TMEM128 3'UTR 0.54 TCGA-L5-A43J-01 4 435768 435768 T C ZNF721 Missense_Mutation p.I830V 0.50 tolerated(0.16) benign(0.401) TCGA-L5-A43J-01 4 44690095 44690095 T C GUF1 Missense_Mutation p.L337S 0.17 deleterious(0) probably_damaging(0.979) TCGA-L5-A43J-01 4 55606777 55606777 G A KIT 3'UTR 0.57 TCGA-L5-A43J-01 4 57333820 57333820 G - SRP72 Frame_Shift_Del p.V9Cfs*10 0.59 TCGA-L5-A43J-01 4 5857915 5857915 A G CRMP1 Missense_Mutation p.Y259H 0.69 tolerated(0.7) benign(0.021) TCGA-L5-A43J-01 4 62937514 62937514 A G LPHN3 3'UTR 0.58 TCGA-L5-A43J-01 4 6323275 6323275 A G PPP2R2C 3'UTR 0.14 TCGA-L5-A43J-01 4 68499110 68499110 A G UBA6 Missense_Mutation p.C699R 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 4 69696698 69696698 A - UGT2B10 3'UTR 0.57 TCGA-L5-A43J-01 4 82348573 82348574 - A RASGEF1B 3'UTR 0.41 TCGA-L5-A43J-01 4 8398737 8398737 C T ACOX3 Missense_Mutation p.R328H 0.60 deleterious(0) probably_damaging(0.997) TCGA-L5-A43J-01 4 85658516 85658516 C T WDFY3 Missense_Mutation p.R2193H 0.60 tolerated(0.37) benign(0.008) TCGA-L5-A43J-01 4 88537661 88537666 AGTGAC - DSPP In_Frame_Del p.D1288_S1289del 0.32 TCGA-L5-A43J-01 4 89628197 89628197 T - HERC3 3'UTR 0.29 TCGA-L5-A43J-01 4 90169281 90169281 C A GPRIN3 Nonsense_Mutation p.G661* 0.47 TCGA-L5-A43J-01 4 91701607 91701607 G T CCSER1 Intron 0.46 TCGA-L5-A43J-01 5 100146435 100146435 T - ST8SIA4 3'UTR 0.61 TCGA-L5-A43J-01 5 101834246 101834246 A T SLCO6A1 Nonsense_Mutation p.C101* 0.68 TCGA-L5-A43J-01 5 1085510 1085510 G A SLC12A7 Missense_Mutation p.R252C 0.07 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 5 114499432 114499432 G A TRIM36 Silent p.I27I 0.77 TCGA-L5-A43J-01 5 127523673 127523673 G A SLC12A2 3'UTR 0.80 TCGA-L5-A43J-01 5 130979570 130979570 T C FNIP1 3'Flank 0.91 TCGA-L5-A43J-01 5 132150631 132150631 G A SOWAHA Missense_Mutation p.D440N 0.33 deleterious(0) probably_damaging(0.997) TCGA-L5-A43J-01 5 132198210 132198210 G A GDF9 Missense_Mutation p.R146C 0.79 tolerated(0.05) benign(0.046) TCGA-L5-A43J-01 5 133915409 133915409 C A JADE2 3'UTR 0.13 TCGA-L5-A43J-01 5 136312360 136312360 A - SPOCK1 3'UTR 0.53 TCGA-L5-A43J-01 5 136983320 136983320 C T KLHL3 Intron 0.50 TCGA-L5-A43J-01 5 13839629 13839629 C T DNAH5 Missense_Mutation p.M1906I 0.10 benign(0.019) TCGA-L5-A43J-01 5 138858042 138858042 C T TMEM173 Missense_Mutation p.R191Q 0.42 tolerated(0.59) benign(0.016) TCGA-L5-A43J-01 5 140176199 140176199 G A PCDHA2 Silent p.T550T 0.31 TCGA-L5-A43J-01 5 140262129 140262129 C T PCDHA13 Silent p.R92R 0.48 TCGA-L5-A43J-01 5 140480982 140480982 C T PCDHB3 Missense_Mutation p.A250V 0.75 deleterious_low_confidence(0) benign(0.001) TCGA-L5-A43J-01 5 140563150 140563150 A G PCDHB16 Missense_Mutation p.D339G 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A43J-01 5 140563850 140563850 C T PCDHB16 Silent p.C572C 0.22 TCGA-L5-A43J-01 5 140574675 140574675 T - PCDHB10 3'UTR 0.14 TCGA-L5-A43J-01 5 140626827 140626827 G A PCDHB15 Missense_Mutation p.V561M 0.67 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-L5-A43J-01 5 140741195 140741195 C T PCDHGB2 Missense_Mutation p.P498L 0.76 tolerated(0.11) benign(0.146) TCGA-L5-A43J-01 5 140768214 140768214 G A PCDHGB4 Missense_Mutation p.V255M 0.28 tolerated(0.11) benign(0.393) TCGA-L5-A43J-01 5 140894715 140894716 - C DIAPH1 3'UTR 0.80 TCGA-L5-A43J-01 5 141243507 141243507 G A PCDH1 Missense_Mutation p.R797C 0.89 deleterious(0.01) possibly_damaging(0.886) TCGA-L5-A43J-01 5 14693294 14693294 G T FAM105B 3'UTR 0.33 TCGA-L5-A43J-01 5 14758594 14758594 C T ANKH Missense_Mutation p.A143T 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A43J-01 5 149432909 149432912 GTTA - CSF1R 3'UTR 0.24 TCGA-L5-A43J-01 5 149677873 149677873 C T ARSI Missense_Mutation p.G205D 0.74 deleterious(0.01) probably_damaging(1) TCGA-L5-A43J-01 5 150275828 150275828 A G ZNF300 Missense_Mutation p.Y341H 0.22 tolerated(0.08) probably_damaging(1) TCGA-L5-A43J-01 5 150922881 150922882 GA - FAT2 Frame_Shift_Del p.P2603Gfs*8 0.45 TCGA-L5-A43J-01 5 156905 156905 C T PLEKHG4B Missense_Mutation p.A433V 0.19 tolerated(0.45) benign(0.038) TCGA-L5-A43J-01 5 156946869 156946869 T C ADAM19 Missense_Mutation p.Q193R 0.22 tolerated(0.54) benign(0.008) TCGA-L5-A43J-01 5 15928463 15928463 C T FBXL7 Missense_Mutation p.R198W 0.12 deleterious(0.02) possibly_damaging(0.898) TCGA-L5-A43J-01 5 167674984 167674984 A G TENM2 Missense_Mutation p.Y2347C 0.83 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 5 171525 171525 A G PLEKHG4B Missense_Mutation p.D983G 0.24 deleterious(0) probably_damaging(0.987) TCGA-L5-A43J-01 5 171809111 171809111 G - SH3PXD2B Frame_Shift_Del p.Y111Tfs*19 0.82 TCGA-L5-A43J-01 5 175516516 175516516 G A FAM153B 5'UTR 0.65 TCGA-L5-A43J-01 5 176869086 176869086 C T GRK6 3'UTR 0.65 TCGA-L5-A43J-01 5 176910724 176910724 T G PDLIM7 Missense_Mutation p.Q432P 0.83 tolerated(0.14) probably_damaging(0.99) TCGA-L5-A43J-01 5 179156974 179156974 T - CANX 3'UTR 0.48 TCGA-L5-A43J-01 5 179306764 179306764 G A TBC1D9B Missense_Mutation p.S427L 0.75 tolerated(0.26) benign(0.003) TCGA-L5-A43J-01 5 180002824 180002824 A - CNOT6 3'UTR 0.69 TCGA-L5-A43J-01 5 31323493 31323493 G A CDH6 3'UTR 0.12 TCGA-L5-A43J-01 5 31431690 31431690 C T DROSHA Silent p.A1046A 0.08 TCGA-L5-A43J-01 5 32087827 32087827 A G PDZD2 Missense_Mutation p.T1425A 0.16 deleterious(0.03) benign(0.037) TCGA-L5-A43J-01 5 32108783 32108783 A - PDZD2 3'UTR 0.08 TCGA-L5-A43J-01 5 32143921 32143922 - A GOLPH3 Frame_Shift_Ins p.L97Ffs*17 0.14 TCGA-L5-A43J-01 5 33441106 33441106 G A TARS 5'UTR 0.27 TCGA-L5-A43J-01 5 36686403 36686403 A G SLC1A3 3'UTR 0.08 TCGA-L5-A43J-01 5 37065247 37065247 A - NIPBL 3'UTR 0.23 TCGA-L5-A43J-01 5 37198930 37198931 - T C5orf42 Frame_Shift_Ins p.N1182Kfs*2 0.10 TCGA-L5-A43J-01 5 38258799 38258799 G A EGFLAM 5'UTR 0.22 TCGA-L5-A43J-01 5 38438444 38438444 C T EGFLAM Missense_Mutation p.A784V 0.25 deleterious(0.02) possibly_damaging(0.604) TCGA-L5-A43J-01 5 39285145 39285145 A G C9 3'UTR 0.14 TCGA-L5-A43J-01 5 45259630 45259630 T - HCN1 3'UTR 0.13 TCGA-L5-A43J-01 5 58271490 58271490 T - PDE4D Frame_Shift_Del p.K669Nfs*7 0.45 TCGA-L5-A43J-01 5 59893478 59893478 T - DEPDC1B 3'UTR 0.36 TCGA-L5-A43J-01 5 6755215 6755215 G A PAPD7 3'UTR 0.17 TCGA-L5-A43J-01 5 6755440 6755440 G A PAPD7 3'UTR 0.08 TCGA-L5-A43J-01 5 73931058 73931058 T C ENC1 Missense_Mutation p.D418G 0.58 deleterious(0.01) possibly_damaging(0.802) TCGA-L5-A43J-01 5 83239319 83239319 T C EDIL3 Silent p.R454R 0.27 TCGA-L5-A43J-01 5 876321 876321 C A BRD9 Missense_Mutation p.Q426H 0.11 tolerated(0.55) probably_damaging(1) TCGA-L5-A43J-01 5 88017128 88017129 - A MEF2C 3'UTR 0.31 TCGA-L5-A43J-01 5 88017644 88017644 A - MEF2C 3'UTR 0.37 TCGA-L5-A43J-01 5 93076993 93076993 G A POU5F2 Nonsense_Mutation p.R93* 0.73 TCGA-L5-A43J-01 5 96126302 96126302 G A ERAP1 Silent p.D455D 0.54 TCGA-L5-A43J-01 6 10407037 10407038 AC - TFAP2A Frame_Shift_Del p.V174Nfs*2 0.26 TCGA-L5-A43J-01 6 105192413 105192413 A G HACE1 Missense_Mutation p.Y806H 0.32 deleterious(0) probably_damaging(0.984) TCGA-L5-A43J-01 6 106553730 106553730 G A PRDM1 Silent p.P565P 0.31 TCGA-L5-A43J-01 6 109215690 109215690 C T ARMC2 Missense_Mutation p.A231V 0.22 tolerated(0.5) benign(0.001) TCGA-L5-A43J-01 6 109764847 109764847 C G SMPD2 Silent p.L337L 0.45 TCGA-L5-A43J-01 6 110530394 110530394 G T CDC40 Missense_Mutation p.V200L 0.14 tolerated(0.29) benign(0.064) TCGA-L5-A43J-01 6 110953273 110953273 T C CDK19 Silent p.P202P 0.33 TCGA-L5-A43J-01 6 110988756 110988756 C T CDK19 Missense_Mutation p.A113T 0.50 tolerated(0.24) benign(0.052) TCGA-L5-A43J-01 6 111694984 111694984 G C REV3L Missense_Mutation p.S1525C 0.28 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 6 116783245 116783245 C T FAM26F Silent p.Y51Y 0.26 TCGA-L5-A43J-01 6 118887391 118887391 G A CEP85L Silent p.S110S 0.39 TCGA-L5-A43J-01 6 123786066 123786066 A C TRDN Missense_Mutation p.S306A 0.16 tolerated_low_confidence(0.15) benign(0.188) TCGA-L5-A43J-01 6 125232172 125232172 C T RP11-510H23.1 RNA 0.59 TCGA-L5-A43J-01 6 126080617 126080617 C T HEY2 Missense_Mutation p.T228M 0.48 deleterious(0.01) possibly_damaging(0.899) TCGA-L5-A43J-01 6 132860174 132860174 T C TAAR9 Missense_Mutation p.V249A 0.24 tolerated(0.17) probably_damaging(0.994) TCGA-L5-A43J-01 6 152422515 152422515 A - ESR1 3'UTR 0.35 TCGA-L5-A43J-01 6 160958928 160958928 G T LPA Missense_Mutation p.A1934D 0.37 tolerated(1) benign(0.19) TCGA-L5-A43J-01 6 161455391 161455391 C - MAP3K4 Frame_Shift_Del p.S87Afs*6 0.28 TCGA-L5-A43J-01 6 165715153 165715153 G A C6orf118 Missense_Mutation p.R220C 0.50 tolerated(0.15) benign(0.006) TCGA-L5-A43J-01 6 168376899 168376900 - G RP3-470B24.5 RNA 0.30 TCGA-L5-A43J-01 6 170591889 170591889 T C DLL1 3'UTR 0.61 TCGA-L5-A43J-01 6 17507510 17507510 C T CAP2 Silent p.S137S 0.29 TCGA-L5-A43J-01 6 22569743 22569743 C T HDGFL1 5'Flank 0.56 TCGA-L5-A43J-01 6 25495432 25495432 T C LRRC16A Silent p.P438P 0.24 TCGA-L5-A43J-01 6 27839733 27839733 T A HIST1H3I Missense_Mutation p.M121L 0.44 deleterious_low_confidence(0.02) benign(0.004) TCGA-L5-A43J-01 6 28227519 28227520 GA - NKAPL Frame_Shift_Del p.R127Dfs*8 0.21 TCGA-L5-A43J-01 6 29797635 29797635 C T HLA-G Missense_Mutation p.A313V 0.31 tolerated_low_confidence(0.31) benign(0.005) TCGA-L5-A43J-01 6 30956125 30956125 A G MUC21 3'UTR 0.47 TCGA-L5-A43J-01 6 31132322 31132324 TTC - POU5F1 3'UTR 0.34 TCGA-L5-A43J-01 6 32032631 32032631 G A TNXB Missense_Mutation p.R2270C 0.14 probably_damaging(0.997) TCGA-L5-A43J-01 6 32138784 32138784 C A AGPAT1 Silent p.G88G 0.32 TCGA-L5-A43J-01 6 33382566 33382566 C - PHF1 Frame_Shift_Del p.P338Lfs*39 0.19 TCGA-L5-A43J-01 6 33540814 33540814 G T BAK1 3'UTR 0.18 TCGA-L5-A43J-01 6 35838144 35838145 - T SRPK1 Frame_Shift_Ins p.R302Kfs*13 0.17 TCGA-L5-A43J-01 6 35944996 35944996 A G SLC26A8 Silent p.S386S 0.29 TCGA-L5-A43J-01 6 37619877 37619877 T C MDGA1 Missense_Mutation p.S408G 0.27 deleterious(0.02) benign(0.252) TCGA-L5-A43J-01 6 38122150 38122150 G - ZFAND3 3'UTR 0.65 TCGA-L5-A43J-01 6 38561994 38561994 G A BTBD9 Missense_Mutation p.R99W 0.38 deleterious(0.02) unknown(0) TCGA-L5-A43J-01 6 41059278 41059279 - T NFYA Frame_Shift_Ins p.S188Ffs*74 0.38 TCGA-L5-A43J-01 6 41651898 41651898 T A TFEB 3'UTR 0.20 TCGA-L5-A43J-01 6 42857242 42857242 A G RPL7L1 3'UTR 0.15 TCGA-L5-A43J-01 6 43488100 43488102 TCC - POLR1C In_Frame_Del p.L198del 0.26 TCGA-L5-A43J-01 6 43596716 43596717 - G GTPBP2 Frame_Shift_Ins p.E62Rfs*3 0.25 TCGA-L5-A43J-01 6 44201262 44201262 G A SLC29A1 Silent p.V456V 0.31 TCGA-L5-A43J-01 6 45870934 45870934 C T CLIC5 Missense_Mutation p.R375Q 0.34 deleterious(0.04) possibly_damaging(0.823) TCGA-L5-A43J-01 6 46656650 46656650 C A TDRD6 Missense_Mutation p.P262H 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 6 50814901 50814901 A - TFAP2B 3'UTR 0.56 TCGA-L5-A43J-01 6 56335022 56335022 G A DST Silent p.G4837G 0.17 TCGA-L5-A43J-01 6 70048831 70048831 G T BAI3 Missense_Mutation p.G1071V 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A43J-01 6 7404247 7404247 G T RIOK1 Missense_Mutation p.G281C 0.29 deleterious(0.01) probably_damaging(0.99) TCGA-L5-A43J-01 6 74073483 74073483 C T KHDC3L Missense_Mutation p.A185V 0.53 tolerated(0.1) probably_damaging(0.936) TCGA-L5-A43J-01 6 75836149 75836149 G A COL12A1 Silent p.D2126D 0.53 TCGA-L5-A43J-01 6 78172236 78172236 G A HTR1B Silent p.S295S 0.21 TCGA-L5-A43J-01 6 83819909 83819909 G - DOPEY1 Frame_Shift_Del p.G187Vfs*21 0.47 TCGA-L5-A43J-01 6 87726135 87726135 C T HTR1E Silent p.C361C 0.39 TCGA-L5-A43J-01 6 96654644 96654644 T - FUT9 3'UTR 0.47 TCGA-L5-A43J-01 6 99283509 99283509 G A POU3F2 Missense_Mutation p.A254T 0.41 tolerated(0.26) benign(0.041) TCGA-L5-A43J-01 6 99285654 99285654 C A POU3F2 3'UTR 0.36 TCGA-L5-A43J-01 7 100092415 100092415 A G NYAP1 3'UTR 0.24 TCGA-L5-A43J-01 7 100677782 100677782 G A MUC17 Missense_Mutation p.G1029S 0.39 benign(0.003) TCGA-L5-A43J-01 7 101845168 101845168 G T CUX1 Missense_Mutation p.R875L 0.39 deleterious(0.01) unknown(0) TCGA-L5-A43J-01 7 102964992 102964992 T - DNAJC2 Frame_Shift_Del p.N197Mfs*8 0.32 TCGA-L5-A43J-01 7 104548840 104548840 A - LHFPL3 3'UTR 0.28 TCGA-L5-A43J-01 7 104731836 104731836 G T KMT2E Intron 0.25 TCGA-L5-A43J-01 7 107557313 107557313 C A DLD Missense_Mutation p.P317H 0.22 deleterious(0) probably_damaging(0.999) TCGA-L5-A43J-01 7 112460529 112460529 A - C7orf60 3'UTR 0.27 TCGA-L5-A43J-01 7 1131884 1131884 G A GPER1 Missense_Mutation p.A174T 0.30 deleterious(0.03) possibly_damaging(0.899) TCGA-L5-A43J-01 7 116340117 116340117 G A MET Missense_Mutation p.A327T 0.37 tolerated(0.11) benign(0.021) TCGA-L5-A43J-01 7 124386623 124386623 G A GPR37 Missense_Mutation p.R600C 0.48 deleterious(0.01) benign(0.363) TCGA-L5-A43J-01 7 12727191 12727191 A G ARL4A 5'UTR 0.17 TCGA-L5-A43J-01 7 127668233 127668233 T - LRRC4 3'UTR 0.31 TCGA-L5-A43J-01 7 128498203 128498203 G A FLNC Missense_Mutation p.R2641Q 0.35 tolerated(0.07) possibly_damaging(0.768) TCGA-L5-A43J-01 7 133977009 133977009 T - SLC35B4 3'UTR 0.71 TCGA-L5-A43J-01 7 138749694 138749695 AG - ZC3HAV1 Frame_Shift_Del p.Y642Sfs*18 0.16 TCGA-L5-A43J-01 7 142250828 142250828 G A TRBV6-4 Silent p.T73T 0.35 TCGA-L5-A43J-01 7 142499034 142499034 C T TRBC2 Missense_Mutation p.S104L 0.20 deleterious_low_confidence(0.01) benign(0.217) TCGA-L5-A43J-01 7 143657236 143657236 C T OR2F1 Missense_Mutation p.P58L 0.39 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 7 149172342 149172342 A G ZNF746 Silent p.G357G 0.34 TCGA-L5-A43J-01 7 149421922 149421922 T C KRBA1 Missense_Mutation p.W370R 0.30 deleterious(0) benign(0.183) TCGA-L5-A43J-01 7 150707781 150707783 CTC - NOS3 In_Frame_Del p.L929del 0.32 TCGA-L5-A43J-01 7 152139920 152139920 A G AC005631.1 3'Flank 0.47 TCGA-L5-A43J-01 7 15652021 15652021 C T MEOX2 Silent p.A302A 0.08 TCGA-L5-A43J-01 7 1582758 1582758 A G TMEM184A 3'UTR 0.63 TCGA-L5-A43J-01 7 18674336 18674336 T C HDAC9 Missense_Mutation p.S295P 0.18 tolerated(0.31) benign(0.001) TCGA-L5-A43J-01 7 20451644 20451644 T - ITGB8 3'UTR 0.18 TCGA-L5-A43J-01 7 2419847 2419847 C A EIF3B 3'UTR 0.32 TCGA-L5-A43J-01 7 2474043 2474043 C A CHST12 3'UTR 0.16 TCGA-L5-A43J-01 7 28996482 28996482 G - AC005013.5 5'Flank 0.25 TCGA-L5-A43J-01 7 32914666 32914666 C T KBTBD2 Missense_Mutation p.G92S 0.39 tolerated(0.86) benign(0.138) TCGA-L5-A43J-01 7 36194797 36194797 A G EEPD1 Silent p.T288T 0.14 TCGA-L5-A43J-01 7 36894043 36894043 A - ELMO1 3'UTR 0.37 TCGA-L5-A43J-01 7 37780310 37780310 C G GPR141 Missense_Mutation p.F105L 0.38 deleterious(0.01) possibly_damaging(0.841) TCGA-L5-A43J-01 7 39745913 39745913 G T RALA 3'UTR 0.15 TCGA-L5-A43J-01 7 42085011 42085011 G A GLI3 Silent p.I266I 0.34 TCGA-L5-A43J-01 7 43647973 43647973 C T STK17A Missense_Mutation p.R180C 0.36 tolerated(0.08) benign(0) TCGA-L5-A43J-01 7 43846645 43846645 G T BLVRA Missense_Mutation p.K234N 0.36 tolerated(0.06) possibly_damaging(0.639) TCGA-L5-A43J-01 7 44101106 44101106 G A DBNL 3'UTR 0.44 TCGA-L5-A43J-01 7 44432048 44432048 C T NUDCD3 Missense_Mutation p.A275T 0.27 deleterious(0) benign(0.07) TCGA-L5-A43J-01 7 44578910 44578910 C T NPC1L1 Silent p.P362P 0.39 TCGA-L5-A43J-01 7 47925456 47925456 C A PKD1L1 Missense_Mutation p.E1011D 0.28 tolerated(0.22) possibly_damaging(0.831) TCGA-L5-A43J-01 7 50737427 50737427 C T GRB10 Missense_Mutation p.A166T 0.23 tolerated(0.6) benign(0.001) TCGA-L5-A43J-01 7 53104354 53104354 C T POM121L12 3'UTR 0.30 TCGA-L5-A43J-01 7 5410103 5410103 G A TNRC18 Silent p.A1374A 0.41 TCGA-L5-A43J-01 7 54617880 54617880 C T VSTM2A Intron 0.18 TCGA-L5-A43J-01 7 55231514 55231514 C T EGFR Missense_Mutation p.R574W 0.32 deleterious(0) possibly_damaging(0.472) TCGA-L5-A43J-01 7 57472766 57472766 G A MIR3147 RNA 0.25 TCGA-L5-A43J-01 7 6062967 6062967 C T AIMP2 Missense_Mutation p.T203M 0.39 tolerated(0.14) benign(0.143) TCGA-L5-A43J-01 7 6200309 6200309 T - USP42 3'UTR 0.28 TCGA-L5-A43J-01 7 62752759 62752759 T C ZNF733P RNA 0.24 TCGA-L5-A43J-01 7 6443115 6443115 T - RAC1 3'Flank 0.12 TCGA-L5-A43J-01 7 73639016 73639018 GAG - LAT2 In_Frame_Del p.E227del 0.55 TCGA-L5-A43J-01 7 73770923 73770923 C T CLIP2 Silent p.S329S 0.32 TCGA-L5-A43J-01 7 75609955 75609955 C - POR Intron 0.28 TCGA-L5-A43J-01 7 76131626 76131626 C T DTX2 Silent p.I414I 0.35 TCGA-L5-A43J-01 7 77408706 77408706 A - RSBN1L 3'UTR 0.50 TCGA-L5-A43J-01 7 77569845 77569845 C T PHTF2 Nonsense_Mutation p.R547* 0.21 TCGA-L5-A43J-01 7 87214954 87214954 C T ABCB1 Missense_Mutation p.G54R 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 7 88956723 88956724 - A ZNF804B Frame_Shift_Ins p.Q108Tfs*6 0.22 TCGA-L5-A43J-01 7 97860399 97860399 C - TECPR1 Frame_Shift_Del p.S719Tfs*24 0.30 TCGA-L5-A43J-01 7 98552779 98552779 C T TRRAP Missense_Mutation p.A1923V 0.47 probably_damaging(0.98) TCGA-L5-A43J-01 7 99956488 99956490 CTT - PILRB In_Frame_Del p.F81del 0.23 TCGA-L5-A43J-01 8 102504783 102504783 G - GRHL2 5'UTR 0.13 TCGA-L5-A43J-01 8 103289349 103289349 T - UBR5 Frame_Shift_Del p.E2121Kfs*28 0.24 TCGA-L5-A43J-01 8 104343649 104343649 G A FZD6 Missense_Mutation p.S678N 0.10 tolerated_low_confidence(0.29) benign(0.001) TCGA-L5-A43J-01 8 106816399 106816399 G T ZFPM2 3'UTR 0.24 TCGA-L5-A43J-01 8 113301669 113301669 G A CSMD3 Missense_Mutation p.R3025C 0.19 deleterious(0.01) probably_damaging(0.967) TCGA-L5-A43J-01 8 113308228 113308228 A T CSMD3 Missense_Mutation p.H2816Q 0.46 deleterious(0) probably_damaging(0.953) TCGA-L5-A43J-01 8 113529438 113529438 C T CSMD3 Silent p.A1527A 0.10 TCGA-L5-A43J-01 8 117858533 117858533 T - RAD21 3'UTR 0.27 TCGA-L5-A43J-01 8 123793943 123793943 T - ZHX2 5'UTR 0.24 TCGA-L5-A43J-01 8 126017779 126017779 G T SQLE Missense_Mutation p.G186V 0.17 deleterious(0) possibly_damaging(0.813) TCGA-L5-A43J-01 8 127569172 127569172 G T FAM84B Missense_Mutation p.L155M 0.12 deleterious(0.04) possibly_damaging(0.49) TCGA-L5-A43J-01 8 12879900 12879900 T C KIAA1456 3'UTR 0.56 TCGA-L5-A43J-01 8 12957055 12957055 C T DLC1 Missense_Mutation p.G931R 0.65 deleterious(0.04) probably_damaging(0.972) TCGA-L5-A43J-01 8 133913767 133913767 G A TG Silent p.T1201T 0.52 TCGA-L5-A43J-01 8 133978910 133978910 C - TG Frame_Shift_Del p.S1885* 0.12 TCGA-L5-A43J-01 8 141294067 141294067 G A TRAPPC9 Missense_Mutation p.P777S 0.11 tolerated(0.19) probably_damaging(0.994) TCGA-L5-A43J-01 8 142161921 142161921 C T DENND3 Silent p.F273F 0.06 TCGA-L5-A43J-01 8 143694918 143694918 G T ARC Missense_Mutation p.L239M 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A43J-01 8 144940504 144940504 G A EPPK1 Silent p.A2306A 0.04 TCGA-L5-A43J-01 8 144947011 144947011 G A EPPK1 Silent p.I137I 0.29 TCGA-L5-A43J-01 8 145008493 145008493 A G PLEC Missense_Mutation p.F525L 0.30 unknown(0) TCGA-L5-A43J-01 8 145138709 145138710 CT - GPAA1 Frame_Shift_Del p.S154Yfs*34 0.25 TCGA-L5-A43J-01 8 145267982 145267982 G A MROH1 Intron 0.09 TCGA-L5-A43J-01 8 145554612 145554612 C T SCRT1 3'UTR 0.25 TCGA-L5-A43J-01 8 145625613 145625613 G - CPSF1 Frame_Shift_Del p.P295Rfs*53 0.12 TCGA-L5-A43J-01 8 145732306 145732306 C - GPT Frame_Shift_Del p.L474Wfs*11 0.23 TCGA-L5-A43J-01 8 145773078 145773078 C T ARHGAP39 Silent p.P464P 0.12 TCGA-L5-A43J-01 8 146063679 146063679 C T ZNF7 Intron 0.21 TCGA-L5-A43J-01 8 17161980 17161980 C T MTMR7 Silent p.R467R 0.69 TCGA-L5-A43J-01 8 21926552 21926552 C - DMTN Frame_Shift_Del p.P94Hfs*137 0.38 TCGA-L5-A43J-01 8 22211817 22211817 G A PIWIL2 Silent p.R897R 0.68 TCGA-L5-A43J-01 8 23700815 23700815 T - STC1 3'UTR 0.61 TCGA-L5-A43J-01 8 27097501 27097501 C T STMN4 Missense_Mutation p.R193Q 0.64 deleterious(0.02) probably_damaging(0.995) TCGA-L5-A43J-01 8 30546820 30546820 T - GSR Frame_Shift_Del p.K300Rfs*21 0.38 TCGA-L5-A43J-01 8 3059147 3059147 C A CSMD1 Silent p.S1695S 0.78 TCGA-L5-A43J-01 8 30921934 30921934 C T WRN Silent p.H113H 0.25 TCGA-L5-A43J-01 8 33449611 33449611 G A DUSP26 Nonsense_Mutation p.R186* 0.60 TCGA-L5-A43J-01 8 42692825 42692825 A - THAP1 3'UTR 0.61 TCGA-L5-A43J-01 8 442324 442324 G A TDRP Intron 0.71 TCGA-L5-A43J-01 8 48805866 48805866 C - PRKDC Frame_Shift_Del p.G1227Vfs*49 0.14 TCGA-L5-A43J-01 8 49831235 49831235 T C SNAI2 3'UTR 0.42 TCGA-L5-A43J-01 8 53055599 53055599 G T ST18 Missense_Mutation p.P687T 0.29 tolerated(0.28) benign(0.008) TCGA-L5-A43J-01 8 57076593 57076593 T C PLAG1 3'UTR 0.14 TCGA-L5-A43J-01 8 57077121 57077122 - T PLAG1 3'UTR 0.25 TCGA-L5-A43J-01 8 62537887 62537887 C T ASPH Intron 0.36 TCGA-L5-A43J-01 8 67488453 67488453 T - MYBL1 Frame_Shift_Del p.N420Tfs*13 0.24 TCGA-L5-A43J-01 8 68107929 68107929 T - CSPP1 3'UTR 0.34 TCGA-L5-A43J-01 8 72128937 72128938 - T EYA1 Frame_Shift_Ins p.N450Kfs*2 0.19 TCGA-L5-A43J-01 8 72965086 72965086 C T RP11-383H13.1 3'UTR 0.74 TCGA-L5-A43J-01 8 76459907 76459907 A - HNF4G Frame_Shift_Del p.E117Kfs*10 0.28 TCGA-L5-A43J-01 8 85774569 85774569 G A RALYL Missense_Mutation p.R164H 0.34 deleterious(0.02) probably_damaging(0.962) TCGA-L5-A43J-01 8 89051307 89051307 A G MMP16 3'UTR 0.07 TCGA-L5-A43J-01 8 91637754 91637754 A - TMEM64 3'UTR 0.53 TCGA-L5-A43J-01 8 91952986 91952986 G A NECAB1 Intron 0.08 TCGA-L5-A43J-01 8 92988144 92988144 C A RUNX1T1 Missense_Mutation p.W457L 0.70 tolerated(0.12) benign(0.41) TCGA-L5-A43J-01 8 94744119 94744119 T - RBM12B 3'UTR 0.38 TCGA-L5-A43J-01 8 94746149 94746149 G T RBM12B Silent p.P830P 0.44 TCGA-L5-A43J-01 8 94752472 94752472 C T RBM12B-AS1 5'UTR 0.38 TCGA-L5-A43J-01 8 95262531 95262532 - G GEM 3'UTR 0.26 TCGA-L5-A43J-01 8 95941247 95941247 A G TP53INP1 3'UTR 0.36 TCGA-L5-A43J-01 8 99441109 99441109 G A KCNS2 Missense_Mutation p.R301Q 0.10 deleterious(0) probably_damaging(0.992) TCGA-L5-A43J-01 8 99467038 99467038 T - STK3 3'UTR 0.39 TCGA-L5-A43J-01 9 100085126 100085126 G A CCDC180 Missense_Mutation p.V435M 0.27 tolerated(1) benign(0.062) TCGA-L5-A43J-01 9 104189797 104189797 G A ALDOB Silent p.N169N 0.25 TCGA-L5-A43J-01 9 108151462 108151463 AC - SLC44A1 3'UTR 0.34 TCGA-L5-A43J-01 9 111698645 111698645 T C FAM206A Silent p.I63I 0.24 TCGA-L5-A43J-01 9 111849505 111849505 G A TMEM245 Missense_Mutation p.A423V 0.27 tolerated(0.85) benign(0.064) TCGA-L5-A43J-01 9 113208246 113208246 A G SVEP1 Missense_Mutation p.L1445P 0.32 probably_damaging(0.982) TCGA-L5-A43J-01 9 113219572 113219572 G A SVEP1 Missense_Mutation p.R1213C 0.48 possibly_damaging(0.67) TCGA-L5-A43J-01 9 113457777 113457777 A G MUSK Silent p.S151S 0.28 TCGA-L5-A43J-01 9 114981366 114981366 G A PTBP3 3'UTR 0.26 TCGA-L5-A43J-01 9 114982433 114982433 A - PTBP3 3'UTR 0.26 TCGA-L5-A43J-01 9 116818309 116818311 TGT - ZNF618 3'UTR 0.33 TCGA-L5-A43J-01 9 121272 121272 G A CBWD1 3'UTR 0.23 TCGA-L5-A43J-01 9 123366682 123366682 T - MEGF9 3'UTR 0.33 TCGA-L5-A43J-01 9 129645443 129645443 T - ZBTB34 3'UTR 0.53 TCGA-L5-A43J-01 9 129646127 129646127 C A ZBTB34 3'UTR 0.40 TCGA-L5-A43J-01 9 129647021 129647022 - G ZBTB34 3'UTR 0.46 TCGA-L5-A43J-01 9 13106846 13106846 C - MPDZ 3'UTR 0.25 TCGA-L5-A43J-01 9 131482844 131482844 C T PKN3 Missense_Mutation p.R877W 0.70 deleterious(0.01) benign(0.017) TCGA-L5-A43J-01 9 131864814 131864814 C - CRAT Frame_Shift_Del p.K166Sfs*5 0.33 TCGA-L5-A43J-01 9 135277540 135277541 - T TTF1 Frame_Shift_Ins p.K224Efs*5 0.31 TCGA-L5-A43J-01 9 136218825 136218826 AG - SURF1 Frame_Shift_Del p.S282Cfs*9 0.22 TCGA-L5-A43J-01 9 136339152 136339152 G A SLC2A6 Missense_Mutation p.A329V 0.31 deleterious(0) probably_damaging(0.992) TCGA-L5-A43J-01 9 136726534 136726534 C T VAV2 Silent p.R114R 0.37 TCGA-L5-A43J-01 9 136897975 136897978 TTTA - BRD3 3'UTR 0.40 TCGA-L5-A43J-01 9 137645711 137645711 G A COL5A1 Missense_Mutation p.G579R 0.10 probably_damaging(1) TCGA-L5-A43J-01 9 139256417 139256419 CCT - DNLZ 3'UTR 0.19 TCGA-L5-A43J-01 9 139399786 139399789 CAGT - NOTCH1 Frame_Shift_Del p.D1520Afs*59 0.53 TCGA-L5-A43J-01 9 139401189 139401189 C A NOTCH1 Nonsense_Mutation p.E1294* 0.84 TCGA-L5-A43J-01 9 139873716 139873716 C T PTGDS Missense_Mutation p.A99V 0.38 deleterious(0.04) benign(0.193) TCGA-L5-A43J-01 9 139877796 139877796 C G LCNL1 5'UTR 0.73 TCGA-L5-A43J-01 9 140059553 140059553 C T GRIN1 Intron 0.44 TCGA-L5-A43J-01 9 140481423 140481423 G A ZMYND19 Nonsense_Mutation p.Q119* 0.44 TCGA-L5-A43J-01 9 140941361 140941361 G A CACNA1B Missense_Mutation p.R1140H 0.20 deleterious(0) possibly_damaging(0.777) TCGA-L5-A43J-01 9 16412328 16412328 A - BNC2 3'UTR 0.43 TCGA-L5-A43J-01 9 20995670 20995670 A - FOCAD 3'UTR 0.48 TCGA-L5-A43J-01 9 23704941 23704941 A G ELAVL2 Silent p.S154S 0.39 TCGA-L5-A43J-01 9 33441446 33441447 - T AQP3 3'UTR 0.18 TCGA-L5-A43J-01 9 33918993 33918997 TGGTC - UBE2R2 3'UTR 0.20 TCGA-L5-A43J-01 9 33956118 33956118 G T UBAP2 Silent p.A275A 0.36 TCGA-L5-A43J-01 9 34241819 34241819 C A UBAP1 Missense_Mutation p.L330M 0.51 deleterious(0) probably_damaging(1) TCGA-L5-A43J-01 9 34724675 34724676 TT - FAM205A Frame_Shift_Del p.K854Rfs*25 0.34 TCGA-L5-A43J-01 9 35044004 35044005 - A C9orf131 Frame_Shift_Ins p.N461Kfs*33 0.48 TCGA-L5-A43J-01 9 35404969 35404970 TC - UNC13B 3'UTR 0.29 TCGA-L5-A43J-01 9 35733097 35733097 C T CREB3 Silent p.D78D 0.20 TCGA-L5-A43J-01 9 37537267 37537267 G A FBXO10 Missense_Mutation p.A420V 0.40 tolerated(0.16) possibly_damaging(0.553) TCGA-L5-A43J-01 9 41962084 41962084 A G RP11-204M4.2 RNA 0.33 TCGA-L5-A43J-01 9 5044449 5044449 C A JAK2 Silent p.R133R 0.28 TCGA-L5-A43J-01 9 5919250 5919251 TT - KIAA2026 3'UTR 0.60 TCGA-L5-A43J-01 9 71094403 71094403 G A PGM5 Missense_Mutation p.R410Q 0.80 tolerated(0.06) possibly_damaging(0.857) TCGA-L5-A43J-01 9 73151058 73151058 C A TRPM3 Silent p.A1645A 0.24 TCGA-L5-A43J-01 9 77562916 77562917 AG - C9orf40 3'UTR 0.39 TCGA-L5-A43J-01 9 79634851 79634851 G T FOXB2 Missense_Mutation p.G94V 0.65 deleterious(0) unknown(0) TCGA-L5-A43J-01 9 79827940 79827940 G A VPS13A Missense_Mutation p.R204H 0.73 tolerated(0.28) benign(0.001) TCGA-L5-A43J-01 9 86586596 86586596 G A HNRNPK Silent p.Y333Y 0.54 TCGA-L5-A43J-01 9 90582463 90582463 G - CDK20 Frame_Shift_Del p.H319Tfs*16 0.41 TCGA-L5-A43J-01 9 968375 968375 T - DMRT1 3'UTR 0.40 TCGA-L5-A43J-01 9 98211549 98211549 G - PTCH1 Frame_Shift_Del p.S1203Afs*52 0.18 TCGA-L5-A43J-01 X 110542237 110542237 C A DCX 3'UTR 0.56 TCGA-L5-A43J-01 X 11135400 11135400 A T HCCS Missense_Mutation p.N89I 0.71 deleterious(0) probably_damaging(0.994) TCGA-L5-A43J-01 X 129804065 129804065 G A ENOX2 Missense_Mutation p.R219C 0.78 deleterious(0) probably_damaging(0.998) TCGA-L5-A43J-01 X 136653275 136653275 T G ZIC3 3'UTR 0.88 TCGA-L5-A43J-01 X 138809668 138809669 - A ATP11C 3'UTR 0.75 TCGA-L5-A43J-01 X 142717789 142717789 G A SLITRK4 Missense_Mutation p.A379V 0.80 deleterious(0) benign(0.278) TCGA-L5-A43J-01 X 153044130 153044130 G A PLXNB3 Splice_Site p.X1898_splice 0.81 TCGA-L5-A43J-01 X 153277192 153277192 G A IRAK1 3'UTR 0.79 TCGA-L5-A43J-01 X 27765039 27765039 C T DCAF8L2 Silent p.D9D 0.88 TCGA-L5-A43J-01 X 43741511 43741511 C - MAOB Frame_Shift_Del p.G12Afs*17 0.56 TCGA-L5-A43J-01 X 45051221 45051221 G A CXorf36 Silent p.P91P 0.73 TCGA-L5-A43J-01 X 47307383 47307383 C T ZNF41 Missense_Mutation p.V596M 0.74 tolerated(0.5) benign(0.159) TCGA-L5-A43J-01 X 48631890 48631890 C T GLOD5 3'UTR 0.21 TCGA-L5-A43J-01 X 49108166 49108166 G A FOXP3 Missense_Mutation p.R369C 0.78 deleterious(0) possibly_damaging(0.893) TCGA-L5-A43J-01 X 51639754 51639754 C T MAGED1 Missense_Mutation p.P391S 0.73 tolerated_low_confidence(0.06) unknown(0) TCGA-L5-A43J-01 X 53576405 53576405 C T HUWE1 Missense_Mutation p.E3184K 0.58 benign(0.305) TCGA-L5-A43J-01 X 53963903 53963906 AAAT - PHF8 3'UTR 0.78 TCGA-L5-A43J-01 X 54360201 54360201 C T WNK3 5'UTR 0.83 TCGA-L5-A43J-01 X 56593362 56593362 A - UBQLN2 3'UTR 0.71 TCGA-L5-A43J-01 X 57318978 57318978 C T FAAH2 Silent p.D80D 0.80 TCGA-L5-A43J-01 X 70330527 70330527 G A IL2RG Missense_Mutation p.S94L 0.67 deleterious(0.05) benign(0.013) TCGA-L5-A43J-01 X 70795640 70795641 - TC OGT 3'UTR 0.42 TCGA-L5-A43J-01 X 73068387 73068387 C G XIST RNA 0.39 TCGA-L5-A43J-01 X 73958693 73958694 AC - KIAA2022 3'UTR 0.77 TCGA-L5-A43J-01 X 76761749 76761749 A G ATRX 3'UTR 0.42 TCGA-L5-A43J-01 X 79932174 79932174 T C BRWD3 Silent p.R1781R 0.68 TCGA-L5-A43J-01 X 82763400 82763400 C T POU3F4 Missense_Mutation p.A23V 0.50 tolerated_low_confidence(0.11) benign(0.001) TCGA-L5-A43J-01 X 91091004 91091004 C T PCDH11X Silent p.D167D 0.79 TCGA-L5-A43M-01 11 104757431 104757431 C T CASP12 3'UTR 0.16 TCGA-L5-A43M-01 11 107375398 107375398 G A ALKBH8 Missense_Mutation p.L661F 0.07 tolerated(0.15) benign(0.167) TCGA-L5-A43M-01 11 123777650 123777650 C A OR8D4 Nonsense_Mutation p.S171* 0.20 TCGA-L5-A43M-01 11 20968944 20968944 C T NELL1 Silent p.H378H 0.19 TCGA-L5-A43M-01 11 46776437 46776437 C A CKAP5 Splice_Site p.X1623_splice 0.12 TCGA-L5-A43M-01 11 60543107 60543107 C T MS4A15 Silent p.S214S 0.32 TCGA-L5-A43M-01 11 88911367 88911367 C T TYR Silent p.S82S 0.23 TCGA-L5-A43M-01 12 33529826 33529826 C T SYT10 Missense_Mutation p.R504Q 0.24 tolerated(0.47) benign(0.004) TCGA-L5-A43M-01 12 51455393 51455393 C T CSRNP2 3'UTR 0.54 TCGA-L5-A43M-01 13 46652979 46652979 G C CPB2 Missense_Mutation p.H148D 0.22 tolerated(0.23) possibly_damaging(0.533) TCGA-L5-A43M-01 14 106733536 106733536 G A IGHV1-24 Missense_Mutation p.T15I 0.23 deleterious(0.04) benign(0.229) TCGA-L5-A43M-01 14 60591065 60591065 A T PCNXL4 Missense_Mutation p.T492S 0.43 deleterious(0.01) possibly_damaging(0.625) TCGA-L5-A43M-01 14 74058892 74058892 C G ACOT4 Missense_Mutation p.P77A 0.31 deleterious(0.01) benign(0.194) TCGA-L5-A43M-01 14 91932626 91932626 C T SMEK1 Intron 0.35 TCGA-L5-A43M-01 15 56390553 56390553 G A RFX7 Missense_Mutation p.P278L 0.67 deleterious(0.02) benign(0.1) TCGA-L5-A43M-01 15 75190056 75190056 C T MPI Silent p.A419A 0.15 TCGA-L5-A43M-01 15 75970175 75970175 C A CSPG4 Missense_Mutation p.W1668L 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A43M-01 16 23707240 23707240 C T ERN2 Missense_Mutation p.G577R 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A43M-01 16 4414633 4414633 C T CORO7 Missense_Mutation p.D368N 0.17 tolerated(0.57) benign(0.02) TCGA-L5-A43M-01 16 67134685 67134685 C T CBFB 3'UTR 0.18 TCGA-L5-A43M-01 17 11711110 11711110 G T DNAH9 Missense_Mutation p.G2828W 0.38 probably_damaging(1) TCGA-L5-A43M-01 17 16735593 16735593 G T KRT16P2 RNA 0.20 TCGA-L5-A43M-01 17 40027984 40027984 C A ACLY Missense_Mutation p.K965N 0.19 deleterious(0.05) benign(0.23) TCGA-L5-A43M-01 17 48696187 48696187 C A CACNA1G Missense_Mutation p.L1867I 0.12 deleterious(0.02) possibly_damaging(0.624) TCGA-L5-A43M-01 17 49708513 49708513 T C CA10 3'UTR 0.11 TCGA-L5-A43M-01 17 8222388 8222388 G A ARHGEF15 Silent p.P699P 0.26 TCGA-L5-A43M-01 18 21708871 21708871 C T TTC39C Missense_Mutation p.S481L 0.26 tolerated(0.23) benign(0.026) TCGA-L5-A43M-01 19 39390226 39390226 C T SIRT2 5'UTR 0.10 TCGA-L5-A43M-01 19 39994766 39994766 A G DLL3 Silent p.E236E 0.16 TCGA-L5-A43M-01 1 158912089 158912089 C A PYHIN1 Missense_Mutation p.P301Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A43M-01 1 165619133 165619133 G T MGST3 Missense_Mutation p.A17S 0.13 tolerated(0.15) benign(0.196) TCGA-L5-A43M-01 1 179308616 179308616 T C SOAT1 Missense_Mutation p.F145L 0.13 deleterious(0.02) probably_damaging(0.915) TCGA-L5-A43M-01 1 185950197 185950197 C A HMCN1 Missense_Mutation p.T885N 0.22 probably_damaging(0.989) TCGA-L5-A43M-01 1 240255442 240255442 C A FMN2 Missense_Mutation p.S11R 0.32 unknown(0) TCGA-L5-A43M-01 1 76280729 76280729 A G MSH4 Silent p.Q241Q 0.21 TCGA-L5-A43M-01 21 35003857 35003857 T C CRYZL1 Translation_Start_Site p.M1? 0.29 deleterious(0) benign(0.265) TCGA-L5-A43M-01 22 19496146 19496146 G A CDC45 Silent p.L415L 0.06 TCGA-L5-A43M-01 22 24622685 24622685 C T GGT5 Missense_Mutation p.V318M 0.40 tolerated(0.35) benign(0.004) TCGA-L5-A43M-01 2 178762828 178762828 C T PDE11A Missense_Mutation p.C420Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-L5-A43M-01 2 179600781 179600781 G A TTN Missense_Mutation p.L4798F 0.12 TCGA-L5-A43M-01 2 202901867 202901867 C A FZD7 3'UTR 0.12 TCGA-L5-A43M-01 2 225265849 225265849 C A FAM124B Missense_Mutation p.G213C 0.16 deleterious(0) probably_damaging(1) TCGA-L5-A43M-01 2 232659056 232659056 A T COPS7B Missense_Mutation p.M108L 0.23 tolerated(0.34) benign(0.015) TCGA-L5-A43M-01 2 73912287 73912287 G T ALMS1P RNA 0.20 TCGA-L5-A43M-01 3 130159600 130159600 G A COL6A5 Missense_Mutation p.G2140R 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A43M-01 4 122854046 122854046 C T TRPC3 Missense_Mutation p.G123S 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A43M-01 5 13769144 13769144 A G DNAH5 Silent p.S3274S 0.14 TCGA-L5-A43M-01 5 162900485 162900486 - T HMMR Frame_Shift_Ins p.E277* 0.12 TCGA-L5-A43M-01 5 35921208 35921208 C T CAPSL Silent p.A5A 0.21 TCGA-L5-A43M-01 6 160679544 160679544 G A SLC22A2 Silent p.G82G 0.32 TCGA-L5-A43M-01 6 31778675 31778675 G A HSPA1L Missense_Mutation p.R359C 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A43M-01 6 32947777 32947778 - G BRD2 Frame_Shift_Ins p.E708Gfs*6 0.12 TCGA-L5-A43M-01 6 37623625 37623625 G A MDGA1 Nonsense_Mutation p.R144* 0.13 TCGA-L5-A43M-01 7 104787088 104787088 A C SRPK2 Missense_Mutation p.D213E 0.20 deleterious(0.04) probably_damaging(0.921) TCGA-L5-A43M-01 7 121652125 121652125 G T PTPRZ1 Missense_Mutation p.D1009Y 0.18 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-L5-A43M-01 7 12414816 12414816 G T VWDE Silent p.S354S 0.29 TCGA-L5-A43M-01 7 149420836 149420836 G A KRBA1 Missense_Mutation p.A262T 0.25 tolerated(0.12) benign(0.016) TCGA-L5-A43M-01 7 156432831 156432831 C A C7orf13 Missense_Mutation p.G173V 0.11 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-L5-A43M-01 7 550549 550549 A G PDGFA Missense_Mutation p.F117S 0.17 deleterious(0) probably_damaging(0.998) TCGA-L5-A43M-01 7 94297728 94297728 G A PEG10 3'UTR 0.14 TCGA-L5-A43M-01 8 124749593 124749593 G A ANXA13 5'UTR 0.24 TCGA-L5-A43M-01 X 109441572 109441572 C A AMMECR1 3'UTR 0.11 TCGA-L5-A43M-01 X 1748766 1748766 G A ASMT Missense_Mutation p.V166I 0.15 tolerated(1) benign(0.014) TCGA-L5-A43M-01 X 21857776 21857776 C A MBTPS2 5'UTR 0.16 TCGA-L5-A43M-01 X 3030501 3030501 G C ARSF Missense_Mutation p.R559S 0.24 deleterious(0.05) benign(0.009) TCGA-L5-A43M-01 X 38135989 38135989 C T TM4SF2 Intron 0.04 TCGA-L5-A43M-01 X 47269756 47269756 C A ZNF157 Missense_Mutation p.H52N 0.09 deleterious(0) benign(0.089) TCGA-L5-A43M-01 X 47775628 47775628 G T ZNF81 Missense_Mutation p.C528F 0.27 deleterious(0) probably_damaging(1) TCGA-L5-A43M-01 X 55515360 55515360 G T USP51 Silent p.R5R 0.19 TCGA-L5-A4OE-01 10 102897439 102897440 - G TLX1 3'UTR 0.37 TCGA-L5-A4OE-01 10 115457341 115457341 C T CASP7 Missense_Mutation p.S63L 0.30 deleterious(0.04) benign(0.02) TCGA-L5-A4OE-01 10 126454174 126454174 C A METTL10 Nonsense_Mutation p.E135* 0.36 TCGA-L5-A4OE-01 10 131634106 131634106 G T EBF3 3'UTR 0.54 TCGA-L5-A4OE-01 10 135025060 135025060 T A KNDC1 Missense_Mutation p.F1348Y 0.17 tolerated(0.09) benign(0.139) TCGA-L5-A4OE-01 10 15256581 15256581 G A FAM171A1 Missense_Mutation p.R336C 0.29 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OE-01 10 18965086 18965086 G A ARL5B 3'UTR 0.32 TCGA-L5-A4OE-01 10 26315325 26315325 G T MYO3A Nonsense_Mutation p.E273* 0.26 TCGA-L5-A4OE-01 10 27408224 27408224 C A YME1L1 Missense_Mutation p.M579I 0.31 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 10 29747146 29747146 G T SVIL 3'UTR 0.45 TCGA-L5-A4OE-01 10 37419184 37419184 G A ANKRD30A Missense_Mutation p.A74T 0.36 deleterious(0) possibly_damaging(0.876) TCGA-L5-A4OE-01 10 84733598 84733598 A C NRG3 Missense_Mutation p.S447R 0.23 deleterious(0.01) possibly_damaging(0.843) TCGA-L5-A4OE-01 10 86274981 86274981 G T CCSER2 3'UTR 0.31 TCGA-L5-A4OE-01 10 97101351 97101351 C A SORBS1 Silent p.R838R 0.36 TCGA-L5-A4OE-01 11 103040912 103040912 G T DYNC2H1 Nonsense_Mutation p.G1682* 0.26 TCGA-L5-A4OE-01 11 105851176 105851206 TATAAAAGTTGTTGGTCATCTTCTTGTTTGC - GRIA4 3'UTR 0.30 TCGA-L5-A4OE-01 11 111229619 111229619 G T POU2AF1 Missense_Mutation p.A14D 0.25 tolerated(0.15) probably_damaging(0.927) TCGA-L5-A4OE-01 11 12261023 12261024 - TT MICAL2 Frame_Shift_Ins p.E702Dfs*36 0.23 TCGA-L5-A4OE-01 11 128781331 128781331 G T KCNJ5 Nonsense_Mutation p.E55* 0.16 TCGA-L5-A4OE-01 11 132812977 132812977 C T OPCML Missense_Mutation p.C4Y 0.32 tolerated_low_confidence(0.37) benign(0.049) TCGA-L5-A4OE-01 11 14479220 14479220 G T COPB1 3'UTR 0.41 TCGA-L5-A4OE-01 11 18750448 18750448 C A PTPN5 3'UTR 0.09 TCGA-L5-A4OE-01 11 19954795 19954795 C A NAV2 Missense_Mutation p.S358R 0.23 tolerated(0.06) benign(0.024) TCGA-L5-A4OE-01 11 27018376 27018376 C T FIBIN 3'UTR 0.43 TCGA-L5-A4OE-01 11 34119305 34119305 C T CAPRIN1 Nonsense_Mutation p.R688* 0.18 TCGA-L5-A4OE-01 11 45924519 45924519 G A MAPK8IP1 Missense_Mutation p.G401R 0.19 tolerated(0.44) benign(0.008) TCGA-L5-A4OE-01 11 46563773 46563773 G C AMBRA1 Silent p.S508S 0.13 TCGA-L5-A4OE-01 11 48188954 48188954 G A PTPRJ 3'UTR 0.44 TCGA-L5-A4OE-01 11 49168287 49168287 C T FOLH1 3'UTR 0.22 TCGA-L5-A4OE-01 11 4944765 4944765 G T OR51G1 Missense_Mutation p.H269N 0.16 tolerated(0.2) benign(0.051) TCGA-L5-A4OE-01 11 5510671 5510671 C A OR52D1 Silent p.G245G 0.33 TCGA-L5-A4OE-01 11 55653117 55653117 G A TRIM51 Silent p.K71K 0.30 TCGA-L5-A4OE-01 11 55944157 55944157 G T OR5J2 Nonsense_Mutation p.E22* 0.22 TCGA-L5-A4OE-01 11 56431989 56431989 G T OR5AR1 Silent p.V276V 0.35 TCGA-L5-A4OE-01 11 59423058 59423058 G T PATL1 Silent p.P323P 0.21 TCGA-L5-A4OE-01 11 63672373 63672373 C A MARK2 Missense_Mutation p.H598N 0.22 deleterious(0.04) possibly_damaging(0.468) TCGA-L5-A4OE-01 11 64896048 64896048 C A SYVN1 Missense_Mutation p.M578I 0.05 tolerated(0.2) unknown(0) TCGA-L5-A4OE-01 11 65404426 65404426 C A PCNXL3 Missense_Mutation p.P2028T 0.48 deleterious_low_confidence(0) benign(0.134) TCGA-L5-A4OE-01 11 65638797 65638797 C T EFEMP2 Silent p.K66K 0.11 TCGA-L5-A4OE-01 11 71146570 71146570 G T DHCR7 Missense_Mutation p.L427M 0.27 deleterious(0.03) benign(0.363) TCGA-L5-A4OE-01 11 76372027 76372027 G A LRRC32 Missense_Mutation p.L204F 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 11 7718030 7718030 A G OVCH2 Silent p.L375L 0.21 TCGA-L5-A4OE-01 11 77910489 77910489 C A USP35 Intron 0.24 TCGA-L5-A4OE-01 11 82611355 82611355 G T PRCP Silent p.G30G 0.37 TCGA-L5-A4OE-01 11 89177378 89177378 C T NOX4 Silent p.L124L 0.23 TCGA-L5-A4OE-01 12 101732688 101732688 G T UTP20 Missense_Mutation p.K1322N 0.20 deleterious(0.02) probably_damaging(0.973) TCGA-L5-A4OE-01 12 10742127 10742127 C T KLRAP1 RNA 0.28 TCGA-L5-A4OE-01 12 123341034 123341034 C T HIP1R Missense_Mutation p.A486V 0.50 tolerated(0.18) benign(0.009) TCGA-L5-A4OE-01 12 124171412 124171412 C T TCTN2 Silent p.F198F 0.08 TCGA-L5-A4OE-01 12 124835202 124835202 G A NCOR2 Missense_Mutation p.R1259W 0.15 probably_damaging(1) TCGA-L5-A4OE-01 12 129558777 129558777 G A TMEM132D Silent p.A981A 0.37 TCGA-L5-A4OE-01 12 133219196 133219196 C T POLE Silent p.K1616K 0.48 TCGA-L5-A4OE-01 12 20854304 20854304 G C SLCO1C1 Missense_Mutation p.G61A 0.25 tolerated(0.44) benign(0.129) TCGA-L5-A4OE-01 12 21919175 21919175 G T KCNJ8 Missense_Mutation p.P253T 0.34 deleterious(0.04) benign(0.142) TCGA-L5-A4OE-01 12 21967598 21967598 C A ABCC9 Missense_Mutation p.R1361I 0.17 deleterious(0) possibly_damaging(0.857) TCGA-L5-A4OE-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.27 deleterious(0) benign(0.361) TCGA-L5-A4OE-01 12 2967850 2967850 C A FOXM1 Missense_Mutation p.G787V 0.42 deleterious(0) probably_damaging(0.947) TCGA-L5-A4OE-01 12 33528890 33528890 A - SYT10 3'UTR 0.33 TCGA-L5-A4OE-01 12 39046542 39046542 C A CPNE8 3'UTR 0.22 TCGA-L5-A4OE-01 12 40714949 40714949 A C LRRK2 Missense_Mutation p.N1710T 0.40 tolerated(0.69) benign(0.16) TCGA-L5-A4OE-01 12 40919118 40919118 A T MUC19 Intron 0.31 TCGA-L5-A4OE-01 12 40919206 40919206 G T MUC19 Intron 0.32 TCGA-L5-A4OE-01 12 41831755 41831755 C A PDZRN4 Intron 0.27 TCGA-L5-A4OE-01 12 49254792 49254792 G T RND1 Silent p.I147I 0.38 TCGA-L5-A4OE-01 12 51598016 51598016 C T POU6F1 5'UTR 0.23 TCGA-L5-A4OE-01 12 53565294 53565294 C A CSAD Intron 0.38 TCGA-L5-A4OE-01 12 56118433 56118433 C A RDH5 3'UTR 0.19 TCGA-L5-A4OE-01 12 57492845 57492845 C A STAT6 Missense_Mutation p.K636N 0.17 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OE-01 12 57627884 57627884 A G SHMT2 Missense_Mutation p.S460G 0.27 tolerated(0.28) benign(0.003) TCGA-L5-A4OE-01 12 57963919 57963919 C T KIF5A Missense_Mutation p.R423C 0.40 deleterious(0.03) benign(0.405) TCGA-L5-A4OE-01 12 57976385 57976385 G C KIF5A Missense_Mutation p.G998A 0.20 deleterious_low_confidence(0.04) benign(0.003) TCGA-L5-A4OE-01 12 57978394 57978394 G A KIF5A 3'UTR 0.21 TCGA-L5-A4OE-01 12 67707391 67707391 C A CAND1 3'UTR 0.24 TCGA-L5-A4OE-01 12 71978313 71978313 G T LGR5 Missense_Mutation p.W841C 0.32 tolerated(0.07) probably_damaging(0.971) TCGA-L5-A4OE-01 12 7655084 7655084 G T CD163 Silent p.T41T 0.17 TCGA-L5-A4OE-01 12 91348791 91348791 G T CCER1 5'UTR 0.36 TCGA-L5-A4OE-01 13 103396504 103396504 T C LINC00283 RNA 0.11 TCGA-L5-A4OE-01 13 113487324 113487324 G A ATP11A Missense_Mutation p.E516K 0.21 tolerated(0.31) benign(0.304) TCGA-L5-A4OE-01 13 113729326 113729326 G A MCF2L Silent p.R377R 0.09 TCGA-L5-A4OE-01 13 28868729 28868729 C A PAN3 3'Flank 0.34 TCGA-L5-A4OE-01 13 29275613 29275613 T G SLC46A3 Intron 0.31 TCGA-L5-A4OE-01 13 36049408 36049408 C T MAB21L1 Missense_Mutation p.D290N 0.13 deleterious(0) benign(0.1) TCGA-L5-A4OE-01 13 37271958 37271958 G T SERTM1 3'UTR 0.47 TCGA-L5-A4OE-01 13 37679185 37679185 C A CSNK1A1L Missense_Mutation p.G70V 0.35 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-L5-A4OE-01 13 42773722 42773722 G T DGKH Missense_Mutation p.C769F 0.25 deleterious(0) probably_damaging(0.984) TCGA-L5-A4OE-01 14 100615693 100615693 G A DEGS2 Missense_Mutation p.T146M 0.42 deleterious(0.02) probably_damaging(1) TCGA-L5-A4OE-01 14 104201082 104201082 C T PPP1R13B 3'UTR 0.17 TCGA-L5-A4OE-01 14 106829809 106829809 C A IGHV4-34 Missense_Mutation p.G52C 0.16 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OE-01 14 20216180 20216180 G T OR4Q3 Silent p.V198V 0.17 TCGA-L5-A4OE-01 14 24030589 24030589 C A AP1G2 Missense_Mutation p.V637F 0.15 tolerated(0.59) benign(0.027) TCGA-L5-A4OE-01 14 24542190 24542190 G A CPNE6 Missense_Mutation p.M15I 0.08 tolerated(0.19) benign(0.002) TCGA-L5-A4OE-01 14 24709243 24709243 C T TINF2 Intron 0.39 TCGA-L5-A4OE-01 14 33293095 33293095 G A AKAP6 Missense_Mutation p.G2026R 0.21 tolerated(0.09) benign(0) TCGA-L5-A4OE-01 14 52417395 52417395 C T GNG2 5'UTR 0.19 TCGA-L5-A4OE-01 14 52937324 52937324 C T TXNDC16 Missense_Mutation p.E463K 0.36 tolerated(0.1) benign(0.102) TCGA-L5-A4OE-01 14 55510760 55510760 G T SOCS4 Missense_Mutation p.R334I 0.42 deleterious(0) possibly_damaging(0.646) TCGA-L5-A4OE-01 14 58874106 58874106 G T TOMM20L Nonsense_Mutation p.E109* 0.46 TCGA-L5-A4OE-01 14 74010027 74010027 G A ACOT1 Missense_Mutation p.E312K 0.21 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OE-01 14 91340005 91340005 C T RPS6KA5 Missense_Mutation p.V711M 0.54 deleterious(0.04) possibly_damaging(0.834) TCGA-L5-A4OE-01 14 92472507 92472507 C A TRIP11 Nonsense_Mutation p.E605* 0.33 TCGA-L5-A4OE-01 14 92628397 92628397 C T CPSF2 3'UTR 0.12 TCGA-L5-A4OE-01 14 94088106 94088106 G T UNC79 Silent p.S1332S 0.23 TCGA-L5-A4OE-01 15 23889871 23889871 G A MAGEL2 Nonsense_Mutation p.Q404* 0.47 TCGA-L5-A4OE-01 15 24923939 24923939 C A NPAP1 Silent p.G975G 0.32 TCGA-L5-A4OE-01 15 29410469 29410469 G A APBA2 3'UTR 0.33 TCGA-L5-A4OE-01 15 31253222 31253222 C T MTMR10 Missense_Mutation p.G207D 0.34 tolerated(0.28) benign(0.021) TCGA-L5-A4OE-01 15 38852095 38852095 C A RASGRP1 Missense_Mutation p.M49I 0.35 tolerated(0.46) benign(0.003) TCGA-L5-A4OE-01 15 38992055 38992055 G T C15orf53 3'UTR 0.50 TCGA-L5-A4OE-01 15 42153663 42153663 C T SPTBN5 Missense_Mutation p.R2590H 0.18 benign(0.001) TCGA-L5-A4OE-01 15 45413391 45413391 C A DUOXA1 Silent p.V78V 0.36 TCGA-L5-A4OE-01 15 51289591 51289591 C T AP4E1 Silent p.G805G 0.37 TCGA-L5-A4OE-01 15 54306906 54306906 G A UNC13C Silent p.K602K 0.18 TCGA-L5-A4OE-01 15 56032809 56032809 G A PRTG Silent p.V56V 0.23 TCGA-L5-A4OE-01 15 63092687 63092687 G T TLN2 Missense_Mutation p.A2119S 0.16 deleterious(0) possibly_damaging(0.906) TCGA-L5-A4OE-01 15 64463587 64463587 G A CSNK1G1 3'UTR 0.19 TCGA-L5-A4OE-01 15 84639233 84639233 C A ADAMTSL3 Intron 0.43 TCGA-L5-A4OE-01 15 85200480 85200480 T A NMB Missense_Mutation p.H86L 0.13 deleterious(0) possibly_damaging(0.767) TCGA-L5-A4OE-01 15 99250814 99250814 C T IGF1R Missense_Mutation p.R40C 0.18 deleterious(0) probably_damaging(0.976) TCGA-L5-A4OE-01 16 2314307 2314307 C A RNPS1 Missense_Mutation p.D33Y 0.59 deleterious_low_confidence(0) unknown(0) TCGA-L5-A4OE-01 16 23226660 23226660 C A SCNN1G Missense_Mutation p.S607Y 0.23 deleterious(0.01) possibly_damaging(0.736) TCGA-L5-A4OE-01 16 29899100 29899100 G A SEZ6L2 Missense_Mutation p.R360C 0.43 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OE-01 16 30536019 30536019 C A ZNF768 Missense_Mutation p.G481V 0.39 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OE-01 16 30718900 30718900 G T SRCAP Missense_Mutation p.R167L 0.36 unknown(0) TCGA-L5-A4OE-01 16 4934233 4934233 G T PPL Missense_Mutation p.L1475I 0.35 tolerated(0.3) benign(0.005) TCGA-L5-A4OE-01 16 55513424 55513424 G A MMP2 Silent p.T11T 0.67 TCGA-L5-A4OE-01 16 57691325 57691325 T C GPR56 Missense_Mutation p.L403P 0.27 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OE-01 16 68712425 68712425 G C CDH3 Missense_Mutation p.D138H 0.52 tolerated(0.05) possibly_damaging(0.744) TCGA-L5-A4OE-01 16 71603806 71603806 G T TAT Missense_Mutation p.A359D 0.44 tolerated(0.3) benign(0.002) TCGA-L5-A4OE-01 16 81080481 81080481 C A ATMIN 3'UTR 0.28 TCGA-L5-A4OE-01 16 88722783 88722783 C T MVD Intron 0.47 TCGA-L5-A4OE-01 17 29283354 29283354 G T ADAP2 Missense_Mutation p.W326C 0.17 deleterious(0) probably_damaging(0.985) TCGA-L5-A4OE-01 17 29622474 29622474 C T OMG Silent p.L292L 0.30 TCGA-L5-A4OE-01 17 29864461 29864461 C A RAB11FIP4 3'UTR 0.08 TCGA-L5-A4OE-01 17 3030174 3030174 G T OR1G1 Silent p.T224T 0.33 TCGA-L5-A4OE-01 17 31415904 31415904 A G ASIC2 Missense_Mutation p.F322L 0.33 tolerated(0.08) probably_damaging(0.994) TCGA-L5-A4OE-01 17 36704897 36704897 G A SRCIN1 Missense_Mutation p.R1056C 0.43 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OE-01 17 37243872 37243872 T C PLXDC1 Missense_Mutation p.T299A 0.24 deleterious(0.04) benign(0.014) TCGA-L5-A4OE-01 17 39190928 39190928 C A KRTAP1-3 Missense_Mutation p.S49I 0.23 tolerated(0.08) unknown(0) TCGA-L5-A4OE-01 17 39550238 39550238 C A KRT31 3'UTR 0.19 TCGA-L5-A4OE-01 17 39976163 39976163 G A FKBP10 Intron 0.36 TCGA-L5-A4OE-01 17 40485740 40485740 C A STAT3 Missense_Mutation p.D334Y 0.16 deleterious(0) possibly_damaging(0.908) TCGA-L5-A4OE-01 17 40706597 40706597 G A HSD17B1 Silent p.A238A 0.26 TCGA-L5-A4OE-01 17 41166358 41166358 C A IFI35 3'UTR 0.47 TCGA-L5-A4OE-01 17 48598572 48598572 G T MYCBPAP Missense_Mutation p.D383Y 0.16 deleterious(0) possibly_damaging(0.893) TCGA-L5-A4OE-01 17 4926854 4926854 G A KIF1C Missense_Mutation p.R907H 0.48 tolerated_low_confidence(0.14) benign(0.009) TCGA-L5-A4OE-01 17 59934422 59934422 G A BRIP1 Nonsense_Mutation p.Q126* 0.35 TCGA-L5-A4OE-01 17 59958388 59958388 G T INTS2 Missense_Mutation p.S753Y 0.32 deleterious(0.01) possibly_damaging(0.621) TCGA-L5-A4OE-01 17 61996179 61996179 G A GH1 5'UTR 0.10 TCGA-L5-A4OE-01 17 62223488 62223488 G T TEX2 3'Flank 0.35 TCGA-L5-A4OE-01 17 65337107 65337107 C A PSMD12 Missense_Mutation p.R408I 0.08 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 17 72348957 72348957 C A KIF19 Intron 0.29 TCGA-L5-A4OE-01 17 73830787 73830787 C T UNC13D Missense_Mutation p.R668H 0.39 deleterious(0.01) possibly_damaging(0.84) TCGA-L5-A4OE-01 17 74772611 74772611 C A MFSD11 Missense_Mutation p.F391L 0.19 deleterious(0.02) probably_damaging(0.976) TCGA-L5-A4OE-01 17 7578401 7578401 G A TP53 Missense_Mutation p.P177S 0.47 deleterious(0) probably_damaging(0.964) TCGA-L5-A4OE-01 17 77984410 77984410 G A TBC1D16 Missense_Mutation p.R110C 0.38 deleterious(0.03) benign(0.028) TCGA-L5-A4OE-01 17 78058694 78058694 C A CCDC40 Missense_Mutation p.S714R 0.22 tolerated(0.1) benign(0.018) TCGA-L5-A4OE-01 17 78090818 78090818 G T GAA Silent p.G747G 0.30 TCGA-L5-A4OE-01 17 7976605 7976605 G T ALOX12B Missense_Mutation p.P596Q 0.50 deleterious(0) probably_damaging(0.959) TCGA-L5-A4OE-01 18 13438311 13438311 G T LDLRAD4 Missense_Mutation p.D37Y 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OE-01 18 48604749 48604749 G T SMAD4 Missense_Mutation p.W524L 0.43 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 18 6965422 6965422 A G LAMA1 Silent p.L2354L 0.46 TCGA-L5-A4OE-01 18 8784602 8784602 G A SOGA2 Missense_Mutation p.E498K 0.45 tolerated(0.53) benign(0.08) TCGA-L5-A4OE-01 19 10794640 10794640 G C ILF3 Missense_Mutation p.G689R 0.11 deleterious(0) unknown(0) TCGA-L5-A4OE-01 19 10943403 10943403 G T TMED1 3'UTR 0.24 TCGA-L5-A4OE-01 19 15226966 15226966 G A ILVBL Missense_Mutation p.P490S 0.35 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 19 21106154 21106154 C A ZNF85 5'UTR 0.10 TCGA-L5-A4OE-01 19 36612449 36612449 A G TBCB Missense_Mutation p.K126E 0.30 tolerated(0.17) benign(0.134) TCGA-L5-A4OE-01 19 40398361 40398361 C T FCGBP Silent p.A2202A 0.07 TCGA-L5-A4OE-01 19 41928277 41928277 T C BCKDHA Splice_Site p.X285_splice 0.50 TCGA-L5-A4OE-01 19 43371902 43371902 A G PSG1 3'UTR 0.43 TCGA-L5-A4OE-01 19 43439677 43439677 G A PSG7 Silent p.S103S 0.24 TCGA-L5-A4OE-01 19 44117487 44117487 G T SRRM5 Missense_Mutation p.R405I 0.47 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OE-01 19 46914593 46914593 C T CCDC8 Missense_Mutation p.R492H 0.26 benign(0.01) TCGA-L5-A4OE-01 19 49387034 49387034 G T TULP2 Silent p.R418R 0.31 TCGA-L5-A4OE-01 19 50243122 50243122 G T TSKS Missense_Mutation p.L564M 0.21 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-L5-A4OE-01 19 51022489 51022489 G A LRRC4B Missense_Mutation p.R161W 0.21 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OE-01 19 51322531 51322531 G A KLK1 Silent p.G236G 0.39 TCGA-L5-A4OE-01 19 51362950 51362950 C A KLK3 Intron 0.17 TCGA-L5-A4OE-01 19 52448658 52448658 G T ZNF613 Missense_Mutation p.G508W 0.61 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 19 53668017 53668017 C T ZNF665 Missense_Mutation p.G576S 0.10 tolerated(0.05) possibly_damaging(0.839) TCGA-L5-A4OE-01 19 53857319 53857319 C A ZNF845 3'UTR 0.54 TCGA-L5-A4OE-01 19 55606101 55606101 G A PPP1R12C Missense_Mutation p.P507L 0.27 tolerated(0.12) benign(0.006) TCGA-L5-A4OE-01 19 56114037 56114037 C T ZNF524 Missense_Mutation p.H187Y 0.33 deleterious(0.01) possibly_damaging(0.883) TCGA-L5-A4OE-01 19 58320386 58320386 C T ZNF552 Missense_Mutation p.M82I 0.32 deleterious(0.01) benign(0.006) TCGA-L5-A4OE-01 19 58574827 58574827 G A ZNF135 Silent p.P70P 0.47 TCGA-L5-A4OE-01 19 6821807 6821807 T C VAV1 Missense_Mutation p.F129S 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A4OE-01 19 8316045 8316045 G T CERS4 Missense_Mutation p.D29Y 0.21 deleterious(0) probably_damaging(0.91) TCGA-L5-A4OE-01 19 9271573 9271573 G A ZNF317 Missense_Mutation p.V418M 0.27 deleterious(0) possibly_damaging(0.719) TCGA-L5-A4OE-01 1 109745764 109745764 G T KIAA1324 3'UTR 0.16 TCGA-L5-A4OE-01 1 114940583 114940583 G A TRIM33 Silent p.D1050D 0.12 TCGA-L5-A4OE-01 1 116675848 116675848 G T MAB21L3 Missense_Mutation p.K317N 0.25 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OE-01 1 117156778 117156778 C A IGSF3 Missense_Mutation p.Q147H 0.50 deleterious(0.04) possibly_damaging(0.796) TCGA-L5-A4OE-01 1 119467305 119467305 G T TBX15 Silent p.L113L 0.54 TCGA-L5-A4OE-01 1 12920049 12920049 C A PRAMEF2 Missense_Mutation p.F263L 0.33 tolerated(0.07) possibly_damaging(0.848) TCGA-L5-A4OE-01 1 13718964 13718964 G T PRAMEF17 3'UTR 0.44 TCGA-L5-A4OE-01 1 143663980 143663980 C T RP6-206I17.1 RNA 0.16 TCGA-L5-A4OE-01 1 150788793 150788793 G T ARNT Missense_Mutation p.P631H 0.27 deleterious_low_confidence(0) possibly_damaging(0.479) TCGA-L5-A4OE-01 1 151139496 151139496 C T SCNM1 Missense_Mutation p.S70F 0.15 deleterious(0.02) probably_damaging(0.917) TCGA-L5-A4OE-01 1 152281866 152281866 C T FLG Silent p.S1832S 0.27 TCGA-L5-A4OE-01 1 152284954 152284954 G T FLG Missense_Mutation p.S803Y 0.32 probably_damaging(0.994) TCGA-L5-A4OE-01 1 15287347 15287347 G T KAZN Missense_Mutation p.A132S 0.40 tolerated(0.48) possibly_damaging(0.739) TCGA-L5-A4OE-01 1 153905496 153905496 G T DENND4B Missense_Mutation p.S1155Y 0.22 deleterious(0) possibly_damaging(0.853) TCGA-L5-A4OE-01 1 154794592 154794592 G T KCNN3 Silent p.I334I 0.18 TCGA-L5-A4OE-01 1 155629732 155629732 G A YY1AP1 Missense_Mutation p.P795S 0.44 tolerated_low_confidence(0.09) possibly_damaging(0.514) TCGA-L5-A4OE-01 1 158724756 158724756 G T OR6K6 Missense_Mutation p.G51C 0.18 tolerated(0.18) possibly_damaging(0.682) TCGA-L5-A4OE-01 1 160113289 160113289 G T ATP1A2 3'UTR 0.17 TCGA-L5-A4OE-01 1 161953836 161953836 C A OLFML2B Missense_Mutation p.G628C 0.45 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 1 168066341 168066341 G A GPR161 Silent p.S188S 0.20 TCGA-L5-A4OE-01 1 183519019 183519019 G T SMG7 Nonsense_Mutation p.E986* 0.19 TCGA-L5-A4OE-01 1 186099753 186099753 G T HMCN1 Missense_Mutation p.R4385I 0.27 probably_damaging(0.997) TCGA-L5-A4OE-01 1 197128851 197128851 C A ZBTB41 Missense_Mutation p.V790F 0.32 tolerated(0.21) benign(0.064) TCGA-L5-A4OE-01 1 203004720 203004720 C A PPFIA4 5'UTR 0.34 TCGA-L5-A4OE-01 1 203037645 203037645 C T PPFIA4 Silent p.Y565Y 0.09 TCGA-L5-A4OE-01 1 203452624 203452624 C A PRELP Silent p.I104I 0.37 TCGA-L5-A4OE-01 1 204948617 204948617 C A NFASC Silent p.V702V 0.21 TCGA-L5-A4OE-01 1 211276912 211276912 G A KCNH1 Missense_Mutation p.T79M 0.06 tolerated(0.19) benign(0.305) TCGA-L5-A4OE-01 1 220957426 220957426 G T MARC2 3'UTR 0.24 TCGA-L5-A4OE-01 1 227834356 227834356 A C ZNF678 5'UTR 0.15 TCGA-L5-A4OE-01 1 228467014 228467014 G T OBSCN Missense_Mutation p.G2851V 0.17 probably_damaging(1) TCGA-L5-A4OE-01 1 228474500 228474500 C T OBSCN Missense_Mutation p.L3531F 0.29 probably_damaging(1) TCGA-L5-A4OE-01 1 233120329 233120329 G T PCNXL2 Intron 0.26 TCGA-L5-A4OE-01 1 237666611 237666611 C T RYR2 Nonsense_Mutation p.R807* 0.27 TCGA-L5-A4OE-01 1 247752501 247752501 C A OR2G2 Missense_Mutation p.F280L 0.41 deleterious(0.05) benign(0.168) TCGA-L5-A4OE-01 1 248005050 248005050 C A OR11L1 Missense_Mutation p.S50I 0.29 tolerated(0.4) benign(0.226) TCGA-L5-A4OE-01 1 248344020 248344020 C A OR2M2 Missense_Mutation p.L245I 0.18 tolerated(0.11) possibly_damaging(0.764) TCGA-L5-A4OE-01 1 24996716 24996716 C A SRRM1 Silent p.P770P 0.37 TCGA-L5-A4OE-01 1 27057934 27057934 C T ARID1A Nonsense_Mutation p.Q548* 0.61 TCGA-L5-A4OE-01 1 31837507 31837507 C A ZCCHC17 3'UTR 0.19 TCGA-L5-A4OE-01 1 35223824 35223824 C A GJB5 3'UTR 0.29 TCGA-L5-A4OE-01 1 36551586 36551586 C A TEKT2 Silent p.I144I 0.31 TCGA-L5-A4OE-01 1 38003422 38003422 G A SNIP1 Missense_Mutation p.S373L 0.62 tolerated(0.11) benign(0.114) TCGA-L5-A4OE-01 1 44820595 44820595 C A ERI3 Missense_Mutation p.W35L 0.22 tolerated_low_confidence(0.18) benign(0.307) TCGA-L5-A4OE-01 1 53544109 53544109 C A PODN Silent p.R357R 0.36 TCGA-L5-A4OE-01 1 55273285 55273285 C A C1orf177 Silent p.A93A 0.26 TCGA-L5-A4OE-01 1 55612610 55612610 C A USP24 Missense_Mutation p.D748Y 0.39 deleterious(0) probably_damaging(0.979) TCGA-L5-A4OE-01 1 5935119 5935119 C A NPHP4 Missense_Mutation p.Q953H 0.40 deleterious(0.05) possibly_damaging(0.878) TCGA-L5-A4OE-01 1 82409360 82409360 G T LPHN2 Missense_Mutation p.D369Y 0.24 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OE-01 1 84417943 84417943 T C TTLL7 5'UTR 0.31 TCGA-L5-A4OE-01 1 897819 897819 G T KLHL17 Missense_Mutation p.D266Y 0.36 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OE-01 1 93316498 93316498 C A FAM69A Missense_Mutation p.K68N 0.33 deleterious(0.03) benign(0.347) TCGA-L5-A4OE-01 1 93812309 93812309 G T DR1 Missense_Mutation p.R36L 0.32 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OE-01 1 99357977 99357977 C A LPPR5 3'UTR 0.49 TCGA-L5-A4OE-01 20 17474583 17474583 G T BFSP1 3'UTR 0.17 TCGA-L5-A4OE-01 20 21689255 21689255 G A PAX1 Missense_Mutation p.V326M 0.39 tolerated_low_confidence(0.38) benign(0.018) TCGA-L5-A4OE-01 20 3673201 3673201 G A SIGLEC1 Missense_Mutation p.R1333C 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OE-01 20 36841560 36841560 G T KIAA1755 Missense_Mutation p.P1163T 0.35 tolerated(0.33) benign(0.079) TCGA-L5-A4OE-01 20 58422326 58422326 A G PHACTR3 3'UTR 0.36 TCGA-L5-A4OE-01 20 60708434 60708434 C T LSM14B Missense_Mutation p.R359W 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OE-01 20 61522367 61522367 G T DIDO1 Silent p.I1162I 0.28 TCGA-L5-A4OE-01 20 62204030 62204030 G A HELZ2 5'Flank 0.40 TCGA-L5-A4OE-01 20 9495488 9495488 G T LAMP5 5'UTR 0.24 TCGA-L5-A4OE-01 21 15218392 15218392 C A CYP4F29P RNA 0.26 TCGA-L5-A4OE-01 21 28296469 28296469 G A ADAMTS5 Missense_Mutation p.T899M 0.22 tolerated(0.13) probably_damaging(1) TCGA-L5-A4OE-01 21 39086633 39086633 G A KCNJ6 Missense_Mutation p.P276L 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 21 45528948 45528948 C A PWP2 Silent p.G34G 0.24 TCGA-L5-A4OE-01 21 46057784 46057784 C A KRTAP10-10 Silent p.V150V 0.19 TCGA-L5-A4OE-01 21 47316264 47316264 G T PCBP3 Silent p.L51L 0.24 TCGA-L5-A4OE-01 22 21368288 21368288 C T P2RX6 5'Flank 0.12 TCGA-L5-A4OE-01 22 24451336 24451336 C T CABIN1 Silent p.T269T 0.20 TCGA-L5-A4OE-01 22 24829476 24829476 G T ADORA2A Missense_Mutation p.S35I 0.46 deleterious(0.01) possibly_damaging(0.837) TCGA-L5-A4OE-01 22 32110194 32110194 C A PRR14L Nonsense_Mutation p.E1211* 0.20 TCGA-L5-A4OE-01 22 36700136 36700136 G T MYH9 Silent p.A765A 0.29 TCGA-L5-A4OE-01 22 38097338 38097338 G T TRIOBP 5'UTR 0.42 TCGA-L5-A4OE-01 22 44168882 44168882 G T EFCAB6 Missense_Mutation p.L81M 0.31 tolerated(0.1) possibly_damaging(0.615) TCGA-L5-A4OE-01 22 50297536 50297536 G T ALG12 Missense_Mutation p.H473N 0.61 benign(0.001) TCGA-L5-A4OE-01 2 128408921 128408921 G A GPR17 Silent p.P232P 0.20 TCGA-L5-A4OE-01 2 130902303 130902303 G T CCDC74B Intron 0.30 TCGA-L5-A4OE-01 2 133403872 133403872 G T GPR39 3'UTR 0.26 TCGA-L5-A4OE-01 2 152409288 152409288 G T NEB Silent p.I6578I 0.36 TCGA-L5-A4OE-01 2 164464404 164464404 G T FIGN 3'UTR 0.36 TCGA-L5-A4OE-01 2 167760159 167760159 C T XIRP2 Missense_Mutation p.S56F 0.16 benign(0.108) TCGA-L5-A4OE-01 2 169658986 169658986 C T NOSTRIN 5'UTR 0.24 TCGA-L5-A4OE-01 2 171702547 171702547 G T GAD1 Missense_Mutation p.A326S 0.31 tolerated(0.3) benign(0.102) TCGA-L5-A4OE-01 2 179620975 179620975 G A TTN Missense_Mutation p.T3743M 0.10 TCGA-L5-A4OE-01 2 18112842 18112842 C A KCNS3 Silent p.I189I 0.26 TCGA-L5-A4OE-01 2 191873763 191873763 G T STAT1 Missense_Mutation p.Q67K 0.25 deleterious(0.01) possibly_damaging(0.812) TCGA-L5-A4OE-01 2 202967673 202967673 C A AC079354.1 Missense_Mutation p.P387Q 0.23 deleterious(0.01) possibly_damaging(0.79) TCGA-L5-A4OE-01 2 210867476 210867476 G T RPE Missense_Mutation p.A31S 0.21 tolerated(0.06) possibly_damaging(0.635) TCGA-L5-A4OE-01 2 210884879 210884879 T G RPE 3'UTR 0.36 TCGA-L5-A4OE-01 2 212488710 212488710 C A ERBB4 Missense_Mutation p.L713F 0.23 deleterious(0.05) probably_damaging(0.99) TCGA-L5-A4OE-01 2 212530158 212530158 T G ERBB4 Silent p.P587P 0.31 TCGA-L5-A4OE-01 2 215890486 215890486 G T ABCA12 Missense_Mutation p.Q400K 0.28 tolerated(0.91) benign(0.044) TCGA-L5-A4OE-01 2 218999903 218999903 G T CXCR2 Nonsense_Mutation p.E127* 0.33 TCGA-L5-A4OE-01 2 219500634 219500634 C T PLCD4 Missense_Mutation p.T671I 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OE-01 2 220396515 220396515 C T ASIC4 Silent p.N333N 0.48 TCGA-L5-A4OE-01 2 228882999 228882999 G A SPHKAP Silent p.S857S 0.44 TCGA-L5-A4OE-01 2 230223312 230223312 C A DNER Missense_Mutation p.D720Y 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 2 230660024 230660024 C T TRIP12 Missense_Mutation p.G1205E 0.21 tolerated(0.1) benign(0.164) TCGA-L5-A4OE-01 2 238232882 238232882 G T COL6A3 3'UTR 0.23 TCGA-L5-A4OE-01 2 33740275 33740275 T A RASGRP3 Splice_Site p.X24_splice 0.34 TCGA-L5-A4OE-01 2 39477812 39477812 G A MAP4K3 Missense_Mutation p.P878S 0.21 deleterious(0.04) probably_damaging(0.998) TCGA-L5-A4OE-01 2 46739853 46739853 C A ATP6V1E2 5'UTR 0.24 TCGA-L5-A4OE-01 2 48915873 48915873 C A LHCGR Missense_Mutation p.D355Y 0.26 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OE-01 2 56570088 56570088 C T CCDC85A Nonsense_Mutation p.Q439* 0.37 TCGA-L5-A4OE-01 2 73476151 73476151 C T CCT7 Silent p.N272N 0.36 TCGA-L5-A4OE-01 3 112358493 112358493 C T CCDC80 Missense_Mutation p.R87H 0.20 tolerated_low_confidence(0.5) benign(0.001) TCGA-L5-A4OE-01 3 113015691 113015691 C A WDR52 Missense_Mutation p.G1707C 0.17 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 3 118865907 118865907 G T C3orf30 Missense_Mutation p.D291Y 0.23 tolerated(0.06) probably_damaging(0.997) TCGA-L5-A4OE-01 3 119316750 119316750 C A PLA1A 5'UTR 0.23 TCGA-L5-A4OE-01 3 129268029 129268029 C A H1FOO Silent p.P188P 0.24 TCGA-L5-A4OE-01 3 12978085 12978085 C T IQSEC1 Missense_Mutation p.R158H 0.30 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OE-01 3 131188618 131188618 C A MRPL3 Splice_Site p.X247_splice 0.10 TCGA-L5-A4OE-01 3 132211267 132211267 G T DNAJC13 Missense_Mutation p.M1211I 0.22 deleterious(0.02) benign(0.41) TCGA-L5-A4OE-01 3 142567183 142567183 G T PCOLCE2 Silent p.G108G 0.25 TCGA-L5-A4OE-01 3 15111829 15111829 T C ZFYVE20 3'UTR 0.42 TCGA-L5-A4OE-01 3 155493558 155493558 C T C3orf33 Missense_Mutation p.R42Q 0.21 tolerated(0.33) benign(0.008) TCGA-L5-A4OE-01 3 155611407 155611407 G A GMPS Missense_Mutation p.R43Q 0.19 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 3 169710958 169710958 C A SEC62 3'UTR 0.10 TCGA-L5-A4OE-01 3 183097171 183097171 G T MCF2L2 Silent p.I63I 0.20 TCGA-L5-A4OE-01 3 186943175 186943175 C A MASP1 Nonsense_Mutation p.E560* 0.44 TCGA-L5-A4OE-01 3 189688652 189688652 C A LEPREL1 Nonsense_Mutation p.E616* 0.40 TCGA-L5-A4OE-01 3 196748333 196748333 C T MFI2 Silent p.A218A 0.29 TCGA-L5-A4OE-01 3 25670414 25670414 G T TOP2B Missense_Mutation p.F605L 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 3 33195262 33195262 G T SUSD5 Missense_Mutation p.L288M 0.32 deleterious(0.01) possibly_damaging(0.826) TCGA-L5-A4OE-01 3 33868054 33868054 C T PDCD6IP Silent p.Y233Y 0.35 TCGA-L5-A4OE-01 3 42700678 42700678 C T ZBTB47 Silent p.D277D 0.31 TCGA-L5-A4OE-01 3 48607184 48607184 C A COL7A1 Missense_Mutation p.G2511W 0.20 probably_damaging(1) TCGA-L5-A4OE-01 3 51418911 51418911 G A DOCK3 Missense_Mutation p.R2005H 0.62 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-L5-A4OE-01 3 9036154 9036154 G T SRGAP3 Missense_Mutation p.R761S 0.30 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OE-01 3 97202843 97202843 C A EPHA6 Missense_Mutation p.H714N 0.06 deleterious(0.02) possibly_damaging(0.7) TCGA-L5-A4OE-01 3 9843356 9843356 C A ARPC4 Silent p.I101I 0.37 TCGA-L5-A4OE-01 3 98568374 98568374 G T DCBLD2 Missense_Mutation p.L168M 0.35 tolerated(0.07) benign(0.043) TCGA-L5-A4OE-01 3 99514427 99514427 C A COL8A1 Missense_Mutation p.P561H 0.20 deleterious(0.01) unknown(0) TCGA-L5-A4OE-01 3 99568551 99568551 C A FILIP1L Nonsense_Mutation p.E657* 0.33 TCGA-L5-A4OE-01 4 100463301 100463301 G A C4orf17 3'UTR 0.20 TCGA-L5-A4OE-01 4 103718072 103718072 C A UBE2D3 3'Flank 0.20 TCGA-L5-A4OE-01 4 10445662 10445662 G T ZNF518B Missense_Mutation p.A764D 0.29 deleterious(0.04) benign(0.296) TCGA-L5-A4OE-01 4 107847018 107847018 C A DKK2 Missense_Mutation p.R104L 0.27 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OE-01 4 114276416 114276416 G A ANK2 Silent p.P2214P 0.33 TCGA-L5-A4OE-01 4 124324801 124324801 A G SPRY1 3'UTR 0.15 TCGA-L5-A4OE-01 4 134072237 134072237 C T PCDH10 Silent p.G314G 0.30 TCGA-L5-A4OE-01 4 1374728 1374728 G T UVSSA Missense_Mutation p.D605Y 0.26 deleterious(0) probably_damaging(0.992) TCGA-L5-A4OE-01 4 140005446 140005446 G T ELF2 Intron 0.57 TCGA-L5-A4OE-01 4 140058904 140058904 G T ELF2 5'UTR 0.32 TCGA-L5-A4OE-01 4 144434713 144434713 C T SMARCA5 5'UTR 0.11 TCGA-L5-A4OE-01 4 147563216 147563216 C A POU4F2 3'UTR 0.29 TCGA-L5-A4OE-01 4 151502535 151502535 G T LRBA Intron 0.17 TCGA-L5-A4OE-01 4 167023605 167023605 C A TLL1 3'UTR 0.43 TCGA-L5-A4OE-01 4 2933310 2933310 G T MFSD10 Missense_Mutation p.P332H 0.22 deleterious(0.02) probably_damaging(1) TCGA-L5-A4OE-01 4 38690448 38690448 C A KLF3 Silent p.S100S 0.06 TCGA-L5-A4OE-01 4 83740205 83740205 G T SEC31A 3'UTR 0.45 TCGA-L5-A4OE-01 4 8469807 8469807 G T TRMT44 Missense_Mutation p.C554F 0.33 tolerated(0.08) benign(0.208) TCGA-L5-A4OE-01 5 111598196 111598196 C T EPB41L4A Missense_Mutation p.V213I 0.18 deleterious(0) probably_damaging(0.919) TCGA-L5-A4OE-01 5 115298609 115298609 C A AQPEP Missense_Mutation p.P99T 0.17 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OE-01 5 128365297 128365297 C A SLC27A6 Missense_Mutation p.S527Y 0.22 deleterious(0) probably_damaging(0.971) TCGA-L5-A4OE-01 5 128994320 128994320 G A ADAMTS19 Missense_Mutation p.C766Y 0.16 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OE-01 5 13817729 13817729 C A DNAH5 Missense_Mutation p.D2306Y 0.10 probably_damaging(0.961) TCGA-L5-A4OE-01 5 140807630 140807630 C T PCDHGB6 Intron 0.34 TCGA-L5-A4OE-01 5 148521054 148521054 G T ABLIM3 5'Flank 0.24 TCGA-L5-A4OE-01 5 150175513 150175513 C G AC010441.1 3'UTR 0.41 TCGA-L5-A4OE-01 5 156590082 156590082 G T FAM71B Silent p.L398L 0.34 TCGA-L5-A4OE-01 5 167489242 167489242 G T TENM2 Missense_Mutation p.R496I 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OE-01 5 175954407 175954407 C G RNF44 3'UTR 0.07 TCGA-L5-A4OE-01 5 178506424 178506424 G A ZNF354C Missense_Mutation p.G331S 0.19 tolerated(1) benign(0.028) TCGA-L5-A4OE-01 5 178771118 178771118 C T ADAMTS2 Missense_Mutation p.V62M 0.33 tolerated(0.06) probably_damaging(0.921) TCGA-L5-A4OE-01 5 180475135 180475135 G T BTNL9 Missense_Mutation p.L106F 0.42 tolerated(0.34) benign(0.335) TCGA-L5-A4OE-01 5 26988397 26988397 A T CDH9 Missense_Mutation p.M15K 0.43 tolerated(0.12) benign(0.012) TCGA-L5-A4OE-01 5 32791060 32791060 T G NPR3 3'UTR 0.18 TCGA-L5-A4OE-01 5 33549398 33549398 G T ADAMTS12 Missense_Mutation p.Q1406K 0.26 deleterious(0.01) benign(0.237) TCGA-L5-A4OE-01 5 33751528 33751528 C A ADAMTS12 Missense_Mutation p.E205D 0.37 tolerated(0.21) benign(0.004) TCGA-L5-A4OE-01 5 33947439 33947439 A T SLC45A2 Silent p.G399G 0.43 TCGA-L5-A4OE-01 5 79024983 79024983 G A CMYA5 Missense_Mutation p.R132Q 0.27 possibly_damaging(0.602) TCGA-L5-A4OE-01 5 79027784 79027784 G T CMYA5 Missense_Mutation p.A1066S 0.24 benign(0.042) TCGA-L5-A4OE-01 5 89756074 89756074 C A MBLAC2 3'UTR 0.14 TCGA-L5-A4OE-01 6 106960163 106960163 G C AIM1 5'UTR 0.14 TCGA-L5-A4OE-01 6 109765475 109765475 G A MICAL1 Silent p.V1041V 0.24 TCGA-L5-A4OE-01 6 109814603 109814603 G C AK9 Missense_Mutation p.S1902C 0.30 deleterious(0.01) possibly_damaging(0.907) TCGA-L5-A4OE-01 6 117250059 117250059 G T RFX6 Missense_Mutation p.D846Y 0.27 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-L5-A4OE-01 6 127898478 127898485 TACATTAT - C6orf58 Frame_Shift_Del p.Y50* 0.21 TCGA-L5-A4OE-01 6 13621098 13621098 G A AL441883.1 Silent p.F8F 0.38 TCGA-L5-A4OE-01 6 152776714 152776714 C A SYNE1 Missense_Mutation p.K913N 0.25 possibly_damaging(0.821) TCGA-L5-A4OE-01 6 165693524 165693524 C T C6orf118 3'UTR 0.13 TCGA-L5-A4OE-01 6 24412553 24412553 G C MRS2 Missense_Mutation p.G173A 0.40 tolerated(0.07) benign(0.275) TCGA-L5-A4OE-01 6 28228436 28228436 C A NKAPL 3'UTR 0.30 TCGA-L5-A4OE-01 6 31600164 31600164 G T PRRC2A Missense_Mutation p.E1238D 0.40 unknown(0) TCGA-L5-A4OE-01 6 31612087 31612087 C T BAG6 Intron 0.21 TCGA-L5-A4OE-01 6 32036692 32036692 A T TNXB Missense_Mutation p.S1937T 0.38 probably_damaging(0.974) TCGA-L5-A4OE-01 6 39162433 39162433 G T KCNK5 Silent p.G134G 0.27 TCGA-L5-A4OE-01 6 44310749 44310749 G A SPATS1 5'UTR 0.17 TCGA-L5-A4OE-01 6 50813537 50813537 G A TFAP2B 3'UTR 0.30 TCGA-L5-A4OE-01 6 51777375 51777375 C A PKHD1 Splice_Site p.X2041_splice 0.33 TCGA-L5-A4OE-01 6 69653794 69653794 G T BAI3 Missense_Mutation p.R368I 0.29 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OE-01 6 70099259 70099259 A T BAI3 3'UTR 0.35 TCGA-L5-A4OE-01 6 72957772 72957772 C A RIMS1 Missense_Mutation p.S728Y 0.33 deleterious(0) possibly_damaging(0.905) TCGA-L5-A4OE-01 6 73905159 73905159 C A KCNQ5 3'UTR 0.29 TCGA-L5-A4OE-01 6 90362717 90362717 G A MDN1 Silent p.I5273I 0.33 TCGA-L5-A4OE-01 6 93952102 93952102 C A EPHA7 3'UTR 0.24 TCGA-L5-A4OE-01 6 97711246 97711246 G T MMS22L Missense_Mutation p.L303I 0.29 tolerated(0.05) probably_damaging(0.99) TCGA-L5-A4OE-01 6 99284722 99284722 T C POU3F2 3'UTR 0.29 TCGA-L5-A4OE-01 7 107340538 107340538 C A SLC26A4 Missense_Mutation p.P542H 0.54 tolerated(0.24) possibly_damaging(0.828) TCGA-L5-A4OE-01 7 107423283 107423283 C G SLC26A3 Missense_Mutation p.V424L 0.54 deleterious(0.01) possibly_damaging(0.633) TCGA-L5-A4OE-01 7 11633043 11633043 C A THSD7A Missense_Mutation p.S370I 0.06 deleterious(0) possibly_damaging(0.493) TCGA-L5-A4OE-01 7 116339373 116339373 C A MET Missense_Mutation p.Q79K 0.44 tolerated(0.91) benign(0.087) TCGA-L5-A4OE-01 7 119915538 119915538 C T KCND2 Silent p.D284D 0.22 TCGA-L5-A4OE-01 7 121773700 121773700 G A AASS Silent p.A27A 0.58 TCGA-L5-A4OE-01 7 129989932 129989932 C A CPA5 Silent p.I105I 0.16 TCGA-L5-A4OE-01 7 135069431 135069431 C A CNOT4 Intron 0.11 TCGA-L5-A4OE-01 7 138764691 138764691 C A ZC3HAV1 Missense_Mutation p.E332D 0.11 deleterious(0.02) possibly_damaging(0.899) TCGA-L5-A4OE-01 7 150217465 150217465 G T GIMAP7 Nonsense_Mutation p.E135* 0.28 TCGA-L5-A4OE-01 7 1517247 1517247 T C INTS1 Missense_Mutation p.D1626G 0.46 deleterious(0) probably_damaging(0.968) TCGA-L5-A4OE-01 7 44530130 44530130 G T NUDCD3 Missense_Mutation p.Q24K 0.19 tolerated(0.05) possibly_damaging(0.828) TCGA-L5-A4OE-01 7 45928202 45928202 C T IGFBP1 5'UTR 0.15 TCGA-L5-A4OE-01 7 76826238 76826238 G T FGL2 Silent p.T226T 0.44 TCGA-L5-A4OE-01 7 81978910 81978910 C G CACNA2D1 Missense_Mutation p.A51P 0.20 tolerated(0.15) probably_damaging(0.948) TCGA-L5-A4OE-01 7 83590866 83590866 G A SEMA3A Missense_Mutation p.P713S 0.52 tolerated(0.51) probably_damaging(0.998) TCGA-L5-A4OE-01 7 95024002 95024002 T G PON3 Missense_Mutation p.E33D 0.38 deleterious(0.05) benign(0) TCGA-L5-A4OE-01 7 99757845 99757845 C A GAL3ST4 Silent p.L389L 0.28 TCGA-L5-A4OE-01 8 107718695 107718695 C A OXR1 Silent p.R317R 0.15 TCGA-L5-A4OE-01 8 142500252 142500252 C A MROH5 3'Flank 0.34 TCGA-L5-A4OE-01 8 144550431 144550431 C A ZC3H3 Missense_Mutation p.C708F 0.29 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OE-01 8 146202598 146202598 C A ZNF252P RNA 0.27 TCGA-L5-A4OE-01 8 24356795 24356795 C A ADAM7 Nonsense_Mutation p.S630* 0.36 TCGA-L5-A4OE-01 8 27308400 27308400 G T PTK2B Missense_Mutation p.E825D 0.42 deleterious(0) probably_damaging(0.952) TCGA-L5-A4OE-01 8 49647687 49647687 C T EFCAB1 Silent p.K8K 0.31 TCGA-L5-A4OE-01 8 52730449 52730449 A C AC090186.1 Silent p.S16S 0.29 TCGA-L5-A4OE-01 8 53074007 53074007 C A ST18 Missense_Mutation p.D508Y 0.30 deleterious(0) probably_damaging(0.992) TCGA-L5-A4OE-01 8 65495597 65495597 G T BHLHE22 3'UTR 0.22 TCGA-L5-A4OE-01 8 72987754 72987754 C A TRPA1 5'UTR 0.27 TCGA-L5-A4OE-01 8 75276660 75276660 G T GDAP1 3'UTR 0.29 TCGA-L5-A4OE-01 8 91937792 91937792 C T NECAB1 Missense_Mutation p.S175L 0.06 tolerated(0.13) benign(0.17) TCGA-L5-A4OE-01 9 103092073 103092073 G T TEX10 Intron 0.29 TCGA-L5-A4OE-01 9 104499784 104499784 C T GRIN3A Missense_Mutation p.D160N 0.28 deleterious(0.01) probably_damaging(0.913) TCGA-L5-A4OE-01 9 108424837 108424837 C A TAL2 Missense_Mutation p.S20R 0.32 tolerated(0.05) benign(0.028) TCGA-L5-A4OE-01 9 112172566 112172566 G T PTPN3 Missense_Mutation p.F481L 0.19 tolerated(0.45) benign(0.027) TCGA-L5-A4OE-01 9 113637690 113637690 C A LPAR1 3'UTR 0.18 TCGA-L5-A4OE-01 9 126770359 126770359 C A LHX2 5'Flank 0.40 TCGA-L5-A4OE-01 9 130230083 130230083 C T LRSAM1 Missense_Mutation p.A198V 0.32 deleterious(0.02) benign(0.002) TCGA-L5-A4OE-01 9 130829111 130829111 C A NAIF1 Silent p.V90V 0.27 TCGA-L5-A4OE-01 9 136892100 136892100 G T BRD3 3'Flank 0.24 TCGA-L5-A4OE-01 9 137989716 137989716 T A OLFM1 Intron 0.26 TCGA-L5-A4OE-01 9 138377387 138377387 C T PPP1R26 Missense_Mutation p.A344V 0.28 tolerated(0.13) benign(0) TCGA-L5-A4OE-01 9 138378132 138378132 C A PPP1R26 Nonsense_Mutation p.C592* 0.23 TCGA-L5-A4OE-01 9 140201422 140201422 G T EXD3 Missense_Mutation p.P871T 0.46 tolerated_low_confidence(0.41) unknown(0) TCGA-L5-A4OE-01 9 325713 325713 C A DOCK8 Silent p.L290L 0.24 TCGA-L5-A4OE-01 9 33473784 33473784 C A NOL6 Intron 0.35 TCGA-L5-A4OE-01 9 34252339 34252339 C A UBAP1 3'UTR 0.44 TCGA-L5-A4OE-01 9 5335515 5335515 C A RLN1 Silent p.L98L 0.22 TCGA-L5-A4OE-01 9 93376008 93376008 C A DIRAS2 Missense_Mutation p.E34D 0.13 tolerated(0.54) benign(0.004) TCGA-L5-A4OE-01 X 106310814 106310814 T C RBM41 Silent p.Q395Q 0.63 TCGA-L5-A4OE-01 X 123838998 123838998 G T TENM1 Missense_Mutation p.P294T 0.75 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-L5-A4OE-01 X 130416537 130416537 G T IGSF1 Nonsense_Mutation p.S376* 0.67 TCGA-L5-A4OE-01 X 132161455 132161455 A G USP26 Missense_Mutation p.V265A 0.57 tolerated(1) benign(0) TCGA-L5-A4OE-01 X 134856807 134856807 C G CT45A1 3'UTR 0.08 TCGA-L5-A4OE-01 X 152097182 152097182 G T ZNF185 Silent p.V297V 0.75 TCGA-L5-A4OE-01 X 1531948 1531948 G A ASMTL Intron 0.27 TCGA-L5-A4OE-01 X 24597492 24597492 C A PCYT1B Missense_Mutation p.A217S 0.61 deleterious(0) benign(0.109) TCGA-L5-A4OE-01 X 3228851 3228851 C T MXRA5 Missense_Mutation p.D2465N 0.62 tolerated(0.16) probably_damaging(0.987) TCGA-L5-A4OE-01 X 37027002 37027002 C T FAM47C Silent p.D173D 0.37 TCGA-L5-A4OE-01 X 37028719 37028719 C T FAM47C Missense_Mutation p.R746W 0.08 deleterious(0) benign(0.266) TCGA-L5-A4OE-01 X 44949973 44949973 C A KDM6A Missense_Mutation p.Q1248K 0.07 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OE-01 X 48889017 48889017 C A TFE3 Silent p.V393V 0.25 TCGA-L5-A4OE-01 X 49054188 49054188 G T SYP Missense_Mutation p.F71L 0.56 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A4OE-01 X 64949488 64949488 G A MSN Silent p.S127S 0.78 TCGA-L5-A4OE-01 X 65420509 65420510 TG - HEPH Frame_Shift_Del p.V719Afs*25 0.38 TCGA-L5-A4OE-01 X 72783107 72783107 C A CHIC1 5'UTR 0.47 TCGA-L5-A4OE-01 X 78426729 78426729 G T GPR174 Missense_Mutation p.R75S 0.42 deleterious(0) probably_damaging(1) TCGA-L5-A4OE-01 X 85218945 85218945 C A CHM Missense_Mutation p.D143Y 0.59 deleterious(0.01) possibly_damaging(0.627) TCGA-L5-A4OE-01 X 91873445 91873445 C A PCDH11X Missense_Mutation p.H1184N 0.76 tolerated_low_confidence(0.57) benign(0.019) TCGA-L5-A4OF-01 10 103339325 103339325 C T POLL Missense_Mutation p.R538Q 0.36 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OF-01 10 106075576 106075576 C A ITPRIP Missense_Mutation p.Q78H 0.09 tolerated(0.08) benign(0.004) TCGA-L5-A4OF-01 10 14950682 14950682 A G DCLRE1C Missense_Mutation p.Y602H 0.16 tolerated_low_confidence(0.53) benign(0.001) TCGA-L5-A4OF-01 10 20023307 20023307 A G MALRD1 3'Flank 0.20 TCGA-L5-A4OF-01 10 34666952 34666952 G A PARD3 Silent p.L494L 0.29 TCGA-L5-A4OF-01 11 107966314 107966314 G A CUL5 Missense_Mutation p.A601T 0.11 deleterious(0) probably_damaging(0.977) TCGA-L5-A4OF-01 11 30932888 30932888 G C DCDC1 Missense_Mutation p.P1245A 0.07 tolerated(0.31) possibly_damaging(0.728) TCGA-L5-A4OF-01 11 48267084 48267084 A G OR4X2 Silent p.G143G 0.06 TCGA-L5-A4OF-01 11 59406601 59406601 G C PATL1 Missense_Mutation p.I737M 0.06 deleterious(0.01) benign(0.031) TCGA-L5-A4OF-01 11 60694732 60694732 C G TMEM132A Missense_Mutation p.L53V 0.26 tolerated(0.12) benign(0.329) TCGA-L5-A4OF-01 11 6943181 6943181 C G OR2D3 Missense_Mutation p.L317V 0.11 tolerated(0.14) benign(0.053) TCGA-L5-A4OF-01 11 7507133 7507133 T C OLFML1 Silent p.S9S 0.08 TCGA-L5-A4OF-01 11 78387198 78387198 C T TENM4 Missense_Mutation p.R1832Q 0.32 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OF-01 12 109604754 109604754 G A ACACB Missense_Mutation p.A248T 0.21 tolerated(0.12) benign(0.322) TCGA-L5-A4OF-01 12 34179462 34179462 A T ALG10 Missense_Mutation p.K345I 0.33 deleterious(0.03) possibly_damaging(0.595) TCGA-L5-A4OF-01 12 45168614 45168614 C A NELL2 Nonsense_Mutation p.E354* 0.14 TCGA-L5-A4OF-01 12 81013286 81013287 - A PTPRQ Frame_Shift_Ins p.N1783Kfs*14 0.23 TCGA-L5-A4OF-01 12 994904 994904 A G WNK1 Missense_Mutation p.K1645R 0.32 deleterious(0.03) benign(0.188) TCGA-L5-A4OF-01 13 113832491 113832491 T A PCID2 3'UTR 0.07 TCGA-L5-A4OF-01 13 32691553 32691557 ATGGC - FRY Frame_Shift_Del p.G137* 0.57 TCGA-L5-A4OF-01 13 84454447 84454447 T G SLITRK1 Missense_Mutation p.K399T 0.62 tolerated(1) benign(0) TCGA-L5-A4OF-01 13 84454489 84454489 T G SLITRK1 Missense_Mutation p.N385T 0.50 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OF-01 14 20528886 20528886 A T OR4L1 Missense_Mutation p.K228I 0.35 deleterious(0.01) benign(0.435) TCGA-L5-A4OF-01 14 22740420 22740420 G A TRAV38-1 Silent p.A108A 0.36 TCGA-L5-A4OF-01 14 24435043 24435043 T C DHRS4 Splice_Site p.X160_splice 0.29 TCGA-L5-A4OF-01 14 32559966 32559966 G A ARHGAP5 Missense_Mutation p.G31R 0.34 deleterious(0) probably_damaging(1) TCGA-L5-A4OF-01 14 74726375 74726375 C T VSX2 Missense_Mutation p.A217V 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OF-01 14 89082165 89082165 G T EML5 Missense_Mutation p.H1977Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.735) TCGA-L5-A4OF-01 15 32983947 32983947 G A SCG5 Missense_Mutation p.E176K 0.29 tolerated(0.46) benign(0.03) TCGA-L5-A4OF-01 15 33955773 33955773 G C RYR3 Missense_Mutation p.E1818D 0.29 possibly_damaging(0.55) TCGA-L5-A4OF-01 15 42729541 42729541 G T ZNF106 Silent p.P1522P 0.28 TCGA-L5-A4OF-01 15 48055281 48055281 G A SEMA6D Missense_Mutation p.E243K 0.30 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OF-01 15 62244056 62244056 T G VPS13C Missense_Mutation p.K1475Q 0.06 deleterious(0.03) benign(0.021) TCGA-L5-A4OF-01 15 83349865 83349865 G A AP3B2 Missense_Mutation p.T196M 0.14 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OF-01 15 84257425 84257425 C A SH3GL3 Missense_Mutation p.A247E 0.24 deleterious(0.03) possibly_damaging(0.577) TCGA-L5-A4OF-01 16 50357595 50357595 A - BRD7 Frame_Shift_Del p.L449Wfs*19 0.46 TCGA-L5-A4OF-01 16 89294491 89294491 A T ZNF778 Missense_Mutation p.T571S 0.09 tolerated(0.46) benign(0.096) TCGA-L5-A4OF-01 16 89981418 89981418 C T MC1R 5'Flank 0.19 TCGA-L5-A4OF-01 17 34893067 34893067 G A PIGW Silent p.L39L 0.19 TCGA-L5-A4OF-01 17 3839574 3839574 G T ATP2A3 Nonsense_Mutation p.Y837* 0.12 TCGA-L5-A4OF-01 17 61559062 61559062 G A ACE Missense_Mutation p.A361T 0.18 tolerated(0.1) probably_damaging(0.968) TCGA-L5-A4OF-01 17 7577515 7577517 TGA - TP53 In_Frame_Del p.I255del 0.57 TCGA-L5-A4OF-01 18 24081088 24081088 C T KCTD1 Missense_Mutation p.G38S 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A4OF-01 18 24513043 24513043 C G CHST9 Intron 0.36 TCGA-L5-A4OF-01 18 31323377 31323377 A G ASXL3 Missense_Mutation p.S1189G 0.16 benign(0.034) TCGA-L5-A4OF-01 18 32889230 32889230 C T ZNF271 RNA 0.16 TCGA-L5-A4OF-01 18 70417507 70417507 C T NETO1 Missense_Mutation p.R444H 0.27 deleterious_low_confidence(0.03) probably_damaging(0.997) TCGA-L5-A4OF-01 19 10224714 10224714 G A PPAN-P2RY11 Missense_Mutation p.R562Q 0.20 tolerated_low_confidence(0.48) benign(0.005) TCGA-L5-A4OF-01 19 12873827 12873827 C T HOOK2 3'UTR 0.23 TCGA-L5-A4OF-01 19 15529750 15529750 A G AKAP8L 5'UTR 0.26 TCGA-L5-A4OF-01 19 15563476 15563476 G C RASAL3 Missense_Mutation p.R941G 0.19 tolerated(0.44) benign(0) TCGA-L5-A4OF-01 19 33697172 33697172 C T LRP3 Missense_Mutation p.T499M 0.27 deleterious(0) possibly_damaging(0.877) TCGA-L5-A4OF-01 19 46056917 46056917 G A OPA3 Intron 0.23 TCGA-L5-A4OF-01 19 53517914 53517914 C A ERVV-1 Missense_Mutation p.L191I 0.14 tolerated(0.44) benign(0.191) TCGA-L5-A4OF-01 19 5831951 5831951 G C FUT6 Missense_Mutation p.Q210E 0.27 tolerated(0.72) benign(0.008) TCGA-L5-A4OF-01 19 7606252 7606252 C T PNPLA6 Missense_Mutation p.R322W 0.42 deleterious(0.01) possibly_damaging(0.497) TCGA-L5-A4OF-01 1 226413489 226413489 C A MIXL1 Silent p.I225I 0.16 TCGA-L5-A4OF-01 1 248790424 248790424 C T OR2T11 Silent p.T2T 0.12 TCGA-L5-A4OF-01 1 35578791 35578791 C T ZMYM1 Nonsense_Mutation p.R454* 0.09 TCGA-L5-A4OF-01 1 52991245 52991245 C T ZCCHC11 Silent p.S236S 0.38 TCGA-L5-A4OF-01 20 30602783 30602783 G A CCM2L Missense_Mutation p.R36H 0.34 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OF-01 20 3175910 3175910 C G DDRGK1 Missense_Mutation p.E200D 0.30 tolerated(0.15) benign(0.307) TCGA-L5-A4OF-01 20 50769375 50769375 C G ZFP64 Missense_Mutation p.E452D 0.27 tolerated(0.59) benign(0.001) TCGA-L5-A4OF-01 20 50769717 50769717 C A ZFP64 Missense_Mutation p.Q338H 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OF-01 20 61591862 61591862 A C SLC17A9 Missense_Mutation p.Y135S 0.28 deleterious(0.02) possibly_damaging(0.809) TCGA-L5-A4OF-01 22 29533461 29533461 C T KREMEN1 Missense_Mutation p.H255Y 0.23 tolerated(0.83) benign(0.008) TCGA-L5-A4OF-01 22 42474405 42474405 C T FAM109B 3'UTR 0.08 TCGA-L5-A4OF-01 2 106690370 106690370 C T C2orf40 Silent p.A52A 0.23 TCGA-L5-A4OF-01 2 128936114 128936114 A G UGGT1 Silent p.A1262A 0.29 TCGA-L5-A4OF-01 2 152348986 152348986 C T NEB Missense_Mutation p.R8263Q 0.40 probably_damaging(0.986) TCGA-L5-A4OF-01 2 172750742 172750742 G C SLC25A12 5'UTR 0.24 TCGA-L5-A4OF-01 2 216946491 216946491 G A PECR 5'UTR 0.27 TCGA-L5-A4OF-01 2 55523495 55523495 G C CCDC88A Missense_Mutation p.L1663V 0.13 tolerated(0.31) benign(0.001) TCGA-L5-A4OF-01 2 77746305 77746305 G A LRRTM4 Silent p.N230N 0.19 TCGA-L5-A4OF-01 2 90122106 90122106 T C IGKV1D-17 Silent p.Y108Y 0.22 TCGA-L5-A4OF-01 3 101056352 101056352 C T SENP7 Splice_Site p.X827_splice 0.40 TCGA-L5-A4OF-01 3 129034048 129034048 T C H1FX 3'UTR 0.19 TCGA-L5-A4OF-01 3 130683834 130683834 C A ATP2C1 Missense_Mutation p.T390K 0.08 deleterious(0) probably_damaging(1) TCGA-L5-A4OF-01 3 136699396 136699396 G A IL20RB Silent p.A59A 0.31 TCGA-L5-A4OF-01 3 143711054 143711054 A T C3orf58 3'UTR 0.17 TCGA-L5-A4OF-01 3 59999860 59999860 A G FHIT Missense_Mutation p.L41P 0.60 tolerated(0.13) probably_damaging(0.945) TCGA-L5-A4OF-01 4 100266378 100266378 C T ADH1C Missense_Mutation p.R102K 0.11 benign(0.003) TCGA-L5-A4OF-01 4 122780222 122780222 G T BBS7 Silent p.I151I 0.32 TCGA-L5-A4OF-01 4 141075015 141075016 - A MAML3 5'UTR 0.16 TCGA-L5-A4OF-01 4 171010890 171010890 A G AADAT 5'UTR 0.15 TCGA-L5-A4OF-01 4 187628345 187628345 G A FAT1 Silent p.I879I 0.53 TCGA-L5-A4OF-01 4 41984592 41984592 G C DCAF4L1 Silent p.G261G 0.25 TCGA-L5-A4OF-01 4 80327977 80327977 C A GK2 Missense_Mutation p.A460S 0.19 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OF-01 6 109766171 109766171 C T MICAL1 Nonsense_Mutation p.W970* 0.47 TCGA-L5-A4OF-01 6 135265095 135265095 C T ALDH8A1 Missense_Mutation p.A50T 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A4OF-01 6 135511293 135511293 C T MYB Missense_Mutation p.P112L 0.17 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OF-01 6 13621074 13621074 A C AL441883.1 Silent p.L16L 0.08 TCGA-L5-A4OF-01 6 13621119 13621119 C G AL441883.1 Translation_Start_Site p.M1? 0.18 unknown(0) TCGA-L5-A4OF-01 6 165715750 165715750 C T C6orf118 Missense_Mutation p.V21M 0.32 tolerated(0.08) unknown(0) TCGA-L5-A4OF-01 6 30514522 30514522 G A GNL1 Silent p.D511D 0.26 TCGA-L5-A4OF-01 6 32168713 32168713 C T NOTCH4 Missense_Mutation p.D1404N 0.32 tolerated(0.33) possibly_damaging(0.639) TCGA-L5-A4OF-01 6 73110245 73110245 G A RIMS1 Missense_Mutation p.M1636I 0.29 deleterious(0) possibly_damaging(0.7) TCGA-L5-A4OF-01 7 5886801 5886801 C T ZNF815P RNA 0.14 TCGA-L5-A4OF-01 7 72856562 72856562 G A BAZ1B Silent p.A1472A 0.27 TCGA-L5-A4OF-01 7 76883829 76883829 G T CCDC146 Missense_Mutation p.K152N 0.55 tolerated(0.15) benign(0.062) TCGA-L5-A4OF-01 7 81331929 81331929 T - HGF Frame_Shift_Del p.I719Lfs*3 0.27 TCGA-L5-A4OF-01 7 94059717 94059717 C A COL1A2 3'UTR 0.32 TCGA-L5-A4OF-01 8 101563157 101563157 C A ANKRD46 Intron 0.35 TCGA-L5-A4OF-01 8 133911080 133911080 G T TG Silent p.L1085L 0.32 TCGA-L5-A4OF-01 8 16043755 16043755 A G MSR1 Intron 0.17 TCGA-L5-A4OF-01 8 17817616 17817616 A C PCM1 Missense_Mutation p.N712H 0.23 deleterious(0) probably_damaging(0.937) TCGA-L5-A4OF-01 9 125273718 125273718 G C OR1J2 Missense_Mutation p.C213S 0.16 tolerated_low_confidence(0.23) possibly_damaging(0.58) TCGA-L5-A4OF-01 9 127220908 127220908 C T GPR144 Nonsense_Mutation p.Q567* 0.52 TCGA-L5-A4OF-01 X 130192302 130192302 G A ARHGAP36 5'UTR 0.67 TCGA-L5-A4OF-01 X 154158692 154158692 C G F8 Missense_Mutation p.A1125P 0.64 tolerated(0.06) benign(0.007) TCGA-L5-A4OF-01 X 16170440 16170440 G T GRPR Missense_Mutation p.C276F 0.85 deleterious(0) probably_damaging(1) TCGA-L5-A4OF-01 X 70367525 70367525 C T NLGN3 5'UTR 0.11 TCGA-L5-A4OG-01 10 14912595 14912595 G A HSPA14 Splice_Site p.X461_splice 0.26 TCGA-L5-A4OG-01 10 25273785 25273785 G A ENKUR Missense_Mutation p.S215L 0.65 deleterious(0.03) probably_damaging(0.978) TCGA-L5-A4OG-01 10 26581439 26581439 G A GAD2 Missense_Mutation p.A478T 0.08 tolerated(0.21) benign(0.239) TCGA-L5-A4OG-01 10 52066359 52066359 C T SGMS1 3'UTR 0.10 TCGA-L5-A4OG-01 10 70432744 70432744 A C TET1 Missense_Mutation p.K1589T 0.22 deleterious(0) probably_damaging(0.92) TCGA-L5-A4OG-01 10 88683659 88683659 A - BMPR1A 3'UTR 0.25 TCGA-L5-A4OG-01 11 103128448 103128448 C T DYNC2H1 Nonsense_Mutation p.R3532* 0.11 TCGA-L5-A4OG-01 11 1247857 1247857 C T MUC5B Missense_Mutation p.A71V 0.12 unknown(0) TCGA-L5-A4OG-01 11 17134183 17134183 G A PIK3C2A Missense_Mutation p.P1118S 0.31 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OG-01 11 30953321 30953321 G A DCDC1 Missense_Mutation p.T965M 0.22 tolerated(0.17) benign(0) TCGA-L5-A4OG-01 11 3681398 3681398 A G ART1 Missense_Mutation p.T217A 0.26 deleterious(0) probably_damaging(0.951) TCGA-L5-A4OG-01 11 49214356 49214356 C T FOLH1 Missense_Mutation p.G168R 0.17 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 11 55135883 55135883 C T OR4A15 Missense_Mutation p.A175V 0.14 tolerated_low_confidence(1) benign(0.003) TCGA-L5-A4OG-01 11 55541165 55541165 G T OR5D13 Missense_Mutation p.L84F 0.27 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OG-01 11 56237921 56237921 C T OR5M3 Missense_Mutation p.R18H 0.14 tolerated(0.38) benign(0) TCGA-L5-A4OG-01 11 57471809 57471809 G A MED19 3'UTR 0.39 TCGA-L5-A4OG-01 11 57506730 57506730 G A TMX2 Missense_Mutation p.E248K 0.11 tolerated(0.16) benign(0.251) TCGA-L5-A4OG-01 11 57585680 57585680 G A CTNND1 3'UTR 0.16 TCGA-L5-A4OG-01 11 64323314 64323314 T C SLC22A11 5'UTR 0.22 TCGA-L5-A4OG-01 11 64434787 64434787 G A NRXN2 Missense_Mutation p.A578V 0.41 deleterious(0.01) benign(0.009) TCGA-L5-A4OG-01 11 65380856 65380856 G A MAP3K11 Silent p.G124G 0.11 TCGA-L5-A4OG-01 12 118588021 118588021 G A TAOK3 3'UTR 0.15 TCGA-L5-A4OG-01 12 21960336 21960336 G A ABCC9 Missense_Mutation p.R1465C 0.09 deleterious(0) probably_damaging(0.979) TCGA-L5-A4OG-01 12 23893903 23893903 T C SOX5 Silent p.R213R 0.19 TCGA-L5-A4OG-01 12 46298934 46298934 C G ARID2 3'UTR 0.27 TCGA-L5-A4OG-01 12 58113911 58113911 C T OS9 Missense_Mutation p.R544W 0.16 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OG-01 12 6833719 6833719 T A COPS7A Intron 0.13 TCGA-L5-A4OG-01 12 73014977 73014977 C T TRHDE Silent p.Y808Y 0.28 TCGA-L5-A4OG-01 12 81657153 81657153 A C PPFIA2 Missense_Mutation p.F1191C 0.19 deleterious(0.01) benign(0.254) TCGA-L5-A4OG-01 12 89865998 89865998 T G POC1B Missense_Mutation p.K169N 0.10 deleterious(0.05) possibly_damaging(0.479) TCGA-L5-A4OG-01 13 102375254 102375254 G A FGF14 Missense_Mutation p.T229M 0.12 tolerated(0.07) possibly_damaging(0.888) TCGA-L5-A4OG-01 13 107822313 107822322 TGTTGTTTTC GTTGTTTTCT FAM155A 3'UTR 0.09 TCGA-L5-A4OG-01 13 23905799 23905799 A C SACS Silent p.T4072T 0.29 TCGA-L5-A4OG-01 13 25480207 25480207 G A CENPJ Nonsense_Mutation p.Q657* 0.14 TCGA-L5-A4OG-01 13 35806721 35806721 T G NBEA Missense_Mutation p.L1914R 0.30 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OG-01 13 36050776 36050776 G A MAB21L1 5'UTR 0.47 TCGA-L5-A4OG-01 13 44735015 44735015 T C SMIM2 5'UTR 0.19 TCGA-L5-A4OG-01 13 50586140 50586140 G A TRIM13 Missense_Mutation p.V25I 0.32 deleterious(0.01) possibly_damaging(0.884) TCGA-L5-A4OG-01 13 76423325 76423325 G A LMO7 Missense_Mutation p.E1188K 0.12 deleterious(0.03) probably_damaging(0.998) TCGA-L5-A4OG-01 14 24036581 24036581 T C AP1G2 5'UTR 0.31 TCGA-L5-A4OG-01 14 32563112 32563112 G A ARHGAP5 Silent p.L1079L 0.16 TCGA-L5-A4OG-01 14 33014439 33014439 C T AKAP6 Missense_Mutation p.R194W 0.21 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OG-01 14 50085611 50085611 T C RPL36AL Missense_Mutation p.E71G 0.14 deleterious(0) benign(0.049) TCGA-L5-A4OG-01 14 52417396 52417396 G A GNG2 5'UTR 0.28 TCGA-L5-A4OG-01 15 32460329 32460329 C T CHRNA7 Silent p.D422D 0.14 TCGA-L5-A4OG-01 15 71185200 71185200 C A LRRC49 5'UTR 0.23 TCGA-L5-A4OG-01 15 75501009 75501009 C T C15orf39 Missense_Mutation p.R874W 0.16 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OG-01 15 90328141 90328141 T A ANPEP 3'UTR 0.17 TCGA-L5-A4OG-01 16 20981193 20981193 G C DNAH3 Silent p.G2793G 0.19 TCGA-L5-A4OG-01 16 30750430 30750430 C T SRCAP Silent p.P3023P 0.16 TCGA-L5-A4OG-01 16 3824636 3824636 C T CREBBP Missense_Mutation p.M739I 0.11 benign(0.235) TCGA-L5-A4OG-01 16 50069359 50069359 A C CNEP1R1 Missense_Mutation p.H140P 0.28 deleterious(0.01) benign(0.101) TCGA-L5-A4OG-01 16 67841166 67841166 T G TSNAXIP1 5'UTR 0.17 TCGA-L5-A4OG-01 16 80718882 80718882 C T CDYL2 Missense_Mutation p.G57R 0.11 tolerated(1) benign(0.134) TCGA-L5-A4OG-01 17 11783507 11783507 A T DNAH9 Nonsense_Mutation p.K3531* 0.20 TCGA-L5-A4OG-01 17 26678702 26678702 G A POLDIP2 Silent p.Y248Y 0.10 TCGA-L5-A4OG-01 17 29253929 29253929 G T ADAP2 Missense_Mutation p.D104Y 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 17 32966180 32966180 C G TMEM132E 3'UTR 0.29 TCGA-L5-A4OG-01 17 36633872 36633872 C T ARHGAP23 Missense_Mutation p.A724V 0.12 tolerated(0.06) benign(0.041) TCGA-L5-A4OG-01 17 4175167 4175167 C T UBE2G1 3'UTR 0.20 TCGA-L5-A4OG-01 17 43171133 43171133 T G NMT1 Missense_Mutation p.F156V 0.17 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OG-01 17 43227942 43227942 C G HEXIM1 3'UTR 0.10 TCGA-L5-A4OG-01 17 43522867 43522867 G A PLEKHM1 Missense_Mutation p.R936W 0.16 deleterious(0) possibly_damaging(0.593) TCGA-L5-A4OG-01 17 48940888 48940888 C T TOB1 Missense_Mutation p.S164N 0.21 tolerated(0.09) benign(0.003) TCGA-L5-A4OG-01 17 60743551 60743551 G A MRC2 Missense_Mutation p.R206H 0.33 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 17 62788498 62788498 G A PLEKHM1P RNA 0.42 TCGA-L5-A4OG-01 17 72768380 72768380 G A NAT9 Missense_Mutation p.A124V 0.31 tolerated(0.15) benign(0.126) TCGA-L5-A4OG-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.37 TCGA-L5-A4OG-01 17 76481737 76481737 C T DNAH17 Missense_Mutation p.G2446S 0.39 probably_damaging(0.993) TCGA-L5-A4OG-01 17 79108176 79108176 C T AATK Missense_Mutation p.G61R 0.08 deleterious(0) benign(0.171) TCGA-L5-A4OG-01 17 79639171 79639171 G A CCDC137 Missense_Mutation p.V216I 0.15 tolerated(0.52) benign(0.004) TCGA-L5-A4OG-01 17 80046282 80046282 G A FASN Silent p.A859A 0.56 TCGA-L5-A4OG-01 17 8722421 8722421 A T PIK3R6 Missense_Mutation p.L658M 0.48 tolerated(0.11) probably_damaging(1) TCGA-L5-A4OG-01 18 3187493 3187493 T G MYOM1 Missense_Mutation p.E305A 0.06 tolerated(0.15) benign(0.097) TCGA-L5-A4OG-01 18 61223390 61223390 A G SERPINB12 5'Flank 0.32 TCGA-L5-A4OG-01 19 1068535 1068535 C T HMHA1 Silent p.H87H 0.28 TCGA-L5-A4OG-01 19 1107994 1107994 G A SBNO2 3'UTR 0.24 TCGA-L5-A4OG-01 19 12429493 12429493 T G ZNF563 Missense_Mutation p.N449T 0.12 deleterious(0) benign(0.18) TCGA-L5-A4OG-01 19 14231262 14231262 T C ASF1B 3'UTR 0.25 TCGA-L5-A4OG-01 19 15839475 15839475 C A OR10H2 Missense_Mutation p.L208M 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 19 22155173 22155173 G T ZNF208 Missense_Mutation p.P888H 0.20 deleterious(0.03) unknown(0) TCGA-L5-A4OG-01 19 22270892 22270892 A C ZNF257 Silent p.R114R 0.17 TCGA-L5-A4OG-01 19 37118379 37118379 A G ZNF382 Missense_Mutation p.K527R 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OG-01 19 38993257 38993257 C T RYR1 Silent p.R2575R 0.26 TCGA-L5-A4OG-01 19 41025471 41025471 C T SPTBN4 Missense_Mutation p.R1023C 0.13 deleterious(0) possibly_damaging(0.891) TCGA-L5-A4OG-01 19 43262165 43262165 A C PSG8 Missense_Mutation p.L233R 0.23 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OG-01 19 43920564 43920564 C T TEX101 Missense_Mutation p.P101L 0.39 tolerated(0.69) benign(0.004) TCGA-L5-A4OG-01 19 44251857 44251857 G A SMG9 Nonsense_Mutation p.Q140* 0.15 TCGA-L5-A4OG-01 19 4538426 4538426 C T LRG1 Silent p.L190L 0.42 TCGA-L5-A4OG-01 19 51532523 51532523 A C KLK12 Intron 0.21 TCGA-L5-A4OG-01 19 57325572 57325572 A G PEG3 Missense_Mutation p.V1413A 0.30 deleterious(0.02) probably_damaging(0.917) TCGA-L5-A4OG-01 19 7152815 7152815 T C INSR Missense_Mutation p.Q718R 0.25 tolerated(0.05) benign(0.003) TCGA-L5-A4OG-01 19 9070919 9070919 A C MUC16 Silent p.S5509S 0.31 TCGA-L5-A4OG-01 19 9091483 9091483 C T MUC16 Missense_Mutation p.G111E 0.17 unknown(0) TCGA-L5-A4OG-01 1 13668960 13668960 C A PRAMEF14 Missense_Mutation p.C457F 0.20 deleterious(0.02) probably_damaging(1) TCGA-L5-A4OG-01 1 152277884 152277884 T C FLG Missense_Mutation p.S3160G 0.34 unknown(0) TCGA-L5-A4OG-01 1 156896983 156896983 C T LRRC71 Intron 0.22 TCGA-L5-A4OG-01 1 15695938 15695938 G A FHAD1 Silent p.T342T 0.21 TCGA-L5-A4OG-01 1 158986435 158986435 G A IFI16 Missense_Mutation p.R165H 0.22 tolerated(0.72) benign(0.001) TCGA-L5-A4OG-01 1 173579278 173579278 G A ANKRD45 3'UTR 0.31 TCGA-L5-A4OG-01 1 190067650 190067650 T G BRINP3 Missense_Mutation p.K600T 0.35 tolerated(0.46) benign(0.063) TCGA-L5-A4OG-01 1 204429718 204429718 A G PIK3C2B Missense_Mutation p.L461P 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 1 207639910 207639910 G A CR2 Missense_Mutation p.R33Q 0.14 tolerated(0.13) benign(0.049) TCGA-L5-A4OG-01 1 216497030 216497030 G C USH2A Missense_Mutation p.P446A 0.38 probably_damaging(0.973) TCGA-L5-A4OG-01 1 227173017 227173017 G C ADCK3 Missense_Mutation p.K545N 0.14 deleterious(0.02) possibly_damaging(0.54) TCGA-L5-A4OG-01 1 229773808 229773808 C T URB2 Missense_Mutation p.H1150Y 0.15 tolerated(0.21) benign(0.001) TCGA-L5-A4OG-01 1 237890425 237890425 T G RYR2 Missense_Mutation p.H3588Q 0.26 benign(0.016) TCGA-L5-A4OG-01 1 28208692 28208692 G C THEMIS2 Missense_Mutation p.G286A 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 1 28290117 28290117 C T XKR8 Missense_Mutation p.L135F 0.26 deleterious(0) possibly_damaging(0.896) TCGA-L5-A4OG-01 1 32384704 32384704 G A PTP4A2 5'UTR 0.16 TCGA-L5-A4OG-01 1 33234269 33234269 C T KIAA1522 Missense_Mutation p.P160L 0.16 tolerated(0.08) unknown(0) TCGA-L5-A4OG-01 1 44443572 44443573 - T ATP6V0B Intron 0.15 TCGA-L5-A4OG-01 1 53792603 53792604 AG - LRP8 Frame_Shift_Del p.S62Cfs*9 0.21 TCGA-L5-A4OG-01 1 9910786 9910786 C T CTNNBIP1 Missense_Mutation p.R79Q 0.23 tolerated_low_confidence(0.2) probably_damaging(0.968) TCGA-L5-A4OG-01 20 10625886 10625886 T C JAG1 Missense_Mutation p.E711G 0.62 tolerated(0.27) benign(0.352) TCGA-L5-A4OG-01 20 2413135 2413135 G A TGM6 Splice_Site p.X656_splice 0.11 TCGA-L5-A4OG-01 20 30408157 30408157 C T MYLK2 Missense_Mutation p.P94L 0.15 tolerated_low_confidence(0.07) benign(0.009) TCGA-L5-A4OG-01 20 33570357 33570357 C T MYH7B Missense_Mutation p.A250V 0.08 benign(0) TCGA-L5-A4OG-01 20 3557593 3557593 G A ATRN Missense_Mutation p.D768N 0.16 tolerated(0.75) benign(0.023) TCGA-L5-A4OG-01 20 47734455 47734455 G A STAU1 Silent p.A456A 0.15 TCGA-L5-A4OG-01 20 60511879 60511879 G A CDH4 Missense_Mutation p.A877T 0.33 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OG-01 20 60963477 60963477 C T RPS21 Intron 0.22 TCGA-L5-A4OG-01 20 61978016 61978016 C A CHRNA4 3'UTR 0.16 TCGA-L5-A4OG-01 21 15558345 15558345 A G LIPI Silent p.L181L 0.24 TCGA-L5-A4OG-01 21 31874223 31874223 G T KRTAP19-5 Nonsense_Mutation p.C62* 0.21 TCGA-L5-A4OG-01 21 43913166 43913166 C A RSPH1 Missense_Mutation p.E26D 0.43 tolerated(0.13) unknown(0) TCGA-L5-A4OG-01 21 43913176 43913176 C T RSPH1 Missense_Mutation p.G23D 0.38 tolerated(0.51) unknown(0) TCGA-L5-A4OG-01 21 45502896 45502896 T C TRAPPC10 Missense_Mutation p.S651P 0.39 tolerated(0.37) benign(0.002) TCGA-L5-A4OG-01 22 19005790 19005790 C T DGCR9 RNA 0.18 TCGA-L5-A4OG-01 22 37602896 37602896 A C SSTR3 Missense_Mutation p.L316R 0.16 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OG-01 22 40080328 40080328 C A CACNA1I Missense_Mutation p.P1951Q 0.24 tolerated(0.05) possibly_damaging(0.884) TCGA-L5-A4OG-01 22 40362100 40362100 A G GRAP2 Missense_Mutation p.R133G 0.29 deleterious(0) benign(0.119) TCGA-L5-A4OG-01 2 133175428 133175428 C T GPR39 Silent p.S271S 0.22 TCGA-L5-A4OG-01 2 141762950 141762950 A G LRP1B Silent p.A819A 0.11 TCGA-L5-A4OG-01 2 144194557 144194557 A T ARHGAP15 Missense_Mutation p.S217C 0.26 deleterious(0.04) possibly_damaging(0.471) TCGA-L5-A4OG-01 2 161055715 161055715 G A ITGB6 Missense_Mutation p.P39L 0.32 deleterious(0) possibly_damaging(0.894) TCGA-L5-A4OG-01 2 166245431 166245431 C A SCN2A Silent p.I1705I 0.23 TCGA-L5-A4OG-01 2 170938562 170938562 G A UBR3 3'UTR 0.22 TCGA-L5-A4OG-01 2 179579062 179579062 G T TTN Missense_Mutation p.N8813K 0.19 TCGA-L5-A4OG-01 2 185801978 185801978 A G ZNF804A Missense_Mutation p.K619E 0.25 tolerated(0.6) benign(0.096) TCGA-L5-A4OG-01 2 187542092 187542092 C T ITGAV 3'UTR 0.29 TCGA-L5-A4OG-01 2 238280759 238280759 G A COL6A3 Missense_Mutation p.R1301W 0.21 probably_damaging(0.994) TCGA-L5-A4OG-01 2 238283179 238283179 G T COL6A3 Silent p.A1185A 0.37 TCGA-L5-A4OG-01 2 242756291 242756291 C T NEU4 Missense_Mutation p.S148L 0.34 deleterious(0) benign(0.015) TCGA-L5-A4OG-01 2 37276984 37276984 G A HEATR5B Silent p.G836G 0.26 TCGA-L5-A4OG-01 2 70439269 70439269 A G TIA1 3'UTR 0.17 TCGA-L5-A4OG-01 2 85809056 85809056 T A VAMP8 3'UTR 0.34 TCGA-L5-A4OG-01 2 96078479 96078479 C T FAHD2A Silent p.V283V 0.34 TCGA-L5-A4OG-01 2 96557486 96557486 C G ANKRD36C Splice_Site 0.19 TCGA-L5-A4OG-01 2 99722121 99722121 T C TSGA10 Missense_Mutation p.K84E 0.19 deleterious(0) possibly_damaging(0.819) TCGA-L5-A4OG-01 3 11303955 11303955 C - HRH1 3'UTR 0.19 TCGA-L5-A4OG-01 3 13372036 13372036 A T NUP210 Missense_Mutation p.M1345K 0.42 tolerated(0.07) benign(0) TCGA-L5-A4OG-01 3 147106021 147106021 C T ZIC4 3'UTR 0.50 TCGA-L5-A4OG-01 3 151012162 151012163 - T GPR87 Frame_Shift_Ins p.I291Nfs*16 0.21 TCGA-L5-A4OG-01 3 154146547 154146547 T C GPR149 Silent p.E286E 0.28 TCGA-L5-A4OG-01 3 48698502 48698502 G A CELSR3 Silent p.P522P 0.33 TCGA-L5-A4OG-01 3 51978457 51978459 AAG - PARP3 In_Frame_Del p.K130del 0.30 TCGA-L5-A4OG-01 3 52546871 52546871 C T STAB1 Missense_Mutation p.R1019C 0.44 deleterious(0.01) benign(0.155) TCGA-L5-A4OG-01 3 52816275 52816275 G A ITIH1 Missense_Mutation p.V308M 0.21 tolerated(0.6) benign(0.062) TCGA-L5-A4OG-01 3 69097567 69097567 A C TMF1 Missense_Mutation p.F97V 0.15 deleterious_low_confidence(0) possibly_damaging(0.78) TCGA-L5-A4OG-01 4 101439059 101439059 G T EMCN Missense_Mutation p.Q5K 0.24 deleterious(0) possibly_damaging(0.621) TCGA-L5-A4OG-01 4 101439061 101439061 A C EMCN Missense_Mutation p.L4R 0.23 deleterious(0) probably_damaging(0.973) TCGA-L5-A4OG-01 4 124323348 124323355 GTTTGGCC - SPRY1 Frame_Shift_Del p.C201Lfs*2 0.37 TCGA-L5-A4OG-01 4 13602210 13602210 A G BOD1L1 Missense_Mutation p.M2105T 0.53 benign(0.002) TCGA-L5-A4OG-01 4 144457812 144457812 C T SMARCA5 Silent p.L492L 0.21 TCGA-L5-A4OG-01 4 165879136 165879136 C A FAM218A 3'UTR 0.31 TCGA-L5-A4OG-01 4 5617215 5617215 C A EVC2 Silent p.L921L 0.11 TCGA-L5-A4OG-01 4 77189825 77189825 G A FAM47E Silent p.T191T 0.26 TCGA-L5-A4OG-01 5 10250439 10250439 C T CCT5 5'UTR 0.10 TCGA-L5-A4OG-01 5 140308191 140308191 C T PCDHAC1 Missense_Mutation p.R572C 0.17 deleterious(0.02) possibly_damaging(0.461) TCGA-L5-A4OG-01 5 140558400 140558400 T C PCDHB8 Missense_Mutation p.V262A 0.13 deleterious_low_confidence(0.02) benign(0.22) TCGA-L5-A4OG-01 5 140559730 140559730 G A PCDHB8 Silent p.S705S 0.28 TCGA-L5-A4OG-01 5 140725857 140725857 T C PCDHGA3 Missense_Mutation p.Y753H 0.15 deleterious_low_confidence(0) possibly_damaging(0.858) TCGA-L5-A4OG-01 5 150657079 150657079 C T SLC36A3 Missense_Mutation p.A471T 0.12 tolerated(0.25) benign(0.034) TCGA-L5-A4OG-01 5 156607998 156607998 T G ITK Missense_Mutation p.F4V 0.19 tolerated(0.26) benign(0.001) TCGA-L5-A4OG-01 5 178359071 178359071 C T ZFP2 Nonsense_Mutation p.Q253* 0.11 TCGA-L5-A4OG-01 5 52779522 52779522 C T FST Silent p.L156L 0.21 TCGA-L5-A4OG-01 5 80716264 80716264 G A SSBP2 3'UTR 0.18 TCGA-L5-A4OG-01 6 107956647 107956647 C T SOBP Nonsense_Mutation p.R867* 0.41 TCGA-L5-A4OG-01 6 11184971 11184971 G A NEDD9 3'UTR 0.25 TCGA-L5-A4OG-01 6 125569519 125569519 G A TPD52L1 Missense_Mutation p.G126R 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A4OG-01 6 152676068 152676068 G C SYNE1 Nonsense_Mutation p.S3551* 0.14 TCGA-L5-A4OG-01 6 24450083 24450083 G A GPLD1 Silent p.N460N 0.22 TCGA-L5-A4OG-01 6 43024117 43024117 C T MRPL2 Missense_Mutation p.R111H 0.09 deleterious(0) probably_damaging(0.992) TCGA-L5-A4OG-01 6 65300261 65300261 A G EYS Silent p.T1833T 0.14 TCGA-L5-A4OG-01 6 93982021 93982021 C T EPHA7 Missense_Mutation p.E482K 0.12 tolerated(0.09) probably_damaging(0.998) TCGA-L5-A4OG-01 7 100282217 100282217 C T GIGYF1 Missense_Mutation p.M495I 0.17 deleterious(0) unknown(0) TCGA-L5-A4OG-01 7 106898783 106898783 C T COG5 Missense_Mutation p.E572K 0.18 tolerated(0.49) benign(0.176) TCGA-L5-A4OG-01 7 107746347 107746347 C T LAMB4 Missense_Mutation p.R262Q 0.22 tolerated(0.09) benign(0.221) TCGA-L5-A4OG-01 7 113519600 113519600 T C PPP1R3A Missense_Mutation p.D516G 0.29 tolerated(0.31) benign(0.006) TCGA-L5-A4OG-01 7 138255646 138255646 G A TRIM24 Silent p.T592T 0.24 TCGA-L5-A4OG-01 7 147092847 147092847 A T CNTNAP2 Missense_Mutation p.I549F 0.13 tolerated(0.11) benign(0.103) TCGA-L5-A4OG-01 7 151927069 151927069 C T KMT2C Missense_Mutation p.G972E 0.06 probably_damaging(1) TCGA-L5-A4OG-01 7 299871 299871 C T FAM20C Silent p.C560C 0.37 TCGA-L5-A4OG-01 7 36375802 36375802 G A KIAA0895 Intron 0.30 TCGA-L5-A4OG-01 7 37924817 37924817 A G NME8 Missense_Mutation p.R404G 0.15 tolerated(0.11) benign(0.002) TCGA-L5-A4OG-01 7 6017359 6017359 A G PMS2 Missense_Mutation p.S769P 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 7 66406853 66406853 A C TMEM248 Translation_Start_Site p.M1? 0.10 tolerated_low_confidence(0.17) benign(0.009) TCGA-L5-A4OG-01 7 6803595 6803595 G A RSPH10B2 Missense_Mutation p.V146M 0.09 tolerated(0.32) benign(0.243) TCGA-L5-A4OG-01 7 89749036 89749036 G A RP5-1121E10.2 Intron 0.08 TCGA-L5-A4OG-01 7 99273804 99273804 A - CYP3A5 Frame_Shift_Del p.F33Lfs*57 0.17 TCGA-L5-A4OG-01 8 103667969 103667969 G A KLF10 5'UTR 0.15 TCGA-L5-A4OG-01 8 104513161 104513161 C T RIMS2 Missense_Mutation p.A16V 0.69 deleterious_low_confidence(0.04) benign(0.115) TCGA-L5-A4OG-01 8 104898169 104898169 T C RIMS2 Silent p.L448L 0.71 TCGA-L5-A4OG-01 8 110425678 110425678 C A PKHD1L1 Missense_Mutation p.A755E 0.21 tolerated(0.85) benign(0.002) TCGA-L5-A4OG-01 8 113516028 113516028 C A CSMD3 Nonsense_Mutation p.E1692* 0.33 TCGA-L5-A4OG-01 8 12884499 12884499 G T KIAA1456 3'UTR 0.16 TCGA-L5-A4OG-01 8 143958194 143958194 C T CYP11B1 Missense_Mutation p.V235I 0.30 tolerated(0.4) benign(0.103) TCGA-L5-A4OG-01 8 145739086 145739086 G A RECQL4 Missense_Mutation p.T690M 0.22 tolerated(0.05) benign(0.254) TCGA-L5-A4OG-01 8 21608305 21608305 G A GFRA2 Missense_Mutation p.R197C 0.12 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OG-01 8 27922180 27922180 G A NUGGC Silent p.A260A 0.18 TCGA-L5-A4OG-01 8 30700453 30700453 A G TEX15 Silent p.D2027D 0.34 TCGA-L5-A4OG-01 8 55541559 55541559 T C RP1 Missense_Mutation p.V1706A 0.30 tolerated(0.36) benign(0.002) TCGA-L5-A4OG-01 8 69058490 69058490 A G PREX2 Silent p.K1378K 0.20 TCGA-L5-A4OG-01 8 87076547 87076547 C T PSKH2 Missense_Mutation p.V167I 0.15 tolerated(0.13) benign(0.047) TCGA-L5-A4OG-01 8 87111238 87111238 G A ATP6V0D2 Missense_Mutation p.V11M 0.20 tolerated(0.09) benign(0.013) TCGA-L5-A4OG-01 8 99170327 99170327 C T POP1 Missense_Mutation p.T968I 0.77 deleterious(0) probably_damaging(1) TCGA-L5-A4OG-01 9 131457912 131457912 T G SET 3'UTR 0.04 TCGA-L5-A4OG-01 9 139730343 139730343 C T RABL6 Intron 0.11 TCGA-L5-A4OG-01 9 140093662 140093662 A G TPRN Missense_Mutation p.F501S 0.26 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OG-01 9 72006645 72006645 C T FAM189A2 Silent p.A426A 0.53 TCGA-L5-A4OG-01 9 84610022 84610022 C T SPATA31D1 Missense_Mutation p.A1546V 0.20 tolerated(0.12) probably_damaging(0.964) TCGA-L5-A4OG-01 X 101620155 101620155 C A NXF2B Missense_Mutation p.D431Y 0.29 deleterious(0) possibly_damaging(0.864) TCGA-L5-A4OG-01 X 123779098 123779098 C T TENM1 Missense_Mutation p.V591I 0.19 tolerated(0.11) benign(0.079) TCGA-L5-A4OG-01 X 132795821 132795821 C T GPC3 Silent p.L473L 0.16 TCGA-L5-A4OG-01 X 136112589 136112589 G A GPR101 Silent p.Y415Y 0.46 TCGA-L5-A4OG-01 X 148072915 148072915 G C AFF2 3'UTR 0.13 TCGA-L5-A4OG-01 X 153052255 153052255 C G IDH3G Splice_Site p.X308_splice 0.09 TCGA-L5-A4OG-01 X 153150822 153150822 G C LCA10 Missense_Mutation p.V189L 0.15 tolerated_low_confidence(0.1) benign(0.205) TCGA-L5-A4OG-01 X 23685898 23685898 G A PRDX4 Missense_Mutation p.D71N 0.45 tolerated(0.09) benign(0.004) TCGA-L5-A4OG-01 X 47774637 47774637 A G ZNF81 Missense_Mutation p.S198G 0.45 tolerated(0.11) benign(0) TCGA-L5-A4OG-01 X 53635828 53635828 A T HUWE1 Missense_Mutation p.D768E 0.37 probably_damaging(0.938) TCGA-L5-A4OG-01 X 57021369 57021369 C T SPIN3 Silent p.P4P 0.37 TCGA-L5-A4OG-01 X 64959699 64959699 C T MSN Missense_Mutation p.R560C 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OG-01 X 68752078 68752078 T A FAM155B 3'UTR 0.58 TCGA-L5-A4OG-01 X 69615565 69615565 A C KIF4A Missense_Mutation p.E759D 0.46 tolerated(0.1) benign(0.144) TCGA-L5-A4OG-01 X 70469460 70469460 G A ZMYM3 Missense_Mutation p.R441W 0.16 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OG-01 X 79699862 79699862 G A FAM46D 3'UTR 0.07 TCGA-L5-A4OG-01 X 83129383 83129383 A C CYLC1 Missense_Mutation p.K556T 0.17 tolerated(0.06) possibly_damaging(0.854) TCGA-L5-A4OG-01 X 85117544 85117544 C A CHM 3'UTR 0.72 TCGA-L5-A4OG-01 X 90690520 90690520 T G PABPC5 5'UTR 0.12 TCGA-L5-A4OG-01 X 99664069 99664069 G A PCDH19 5'UTR 0.19 TCGA-L5-A4OH-01 10 112649298 112649298 G T PDCD4 Missense_Mutation p.G262V 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A4OH-01 10 115609620 115609620 G A DCLRE1A Missense_Mutation p.A415V 0.40 tolerated(0.16) benign(0.015) TCGA-L5-A4OH-01 10 121207692 121207692 G A GRK5 Missense_Mutation p.V442I 0.29 tolerated(0.16) benign(0.244) TCGA-L5-A4OH-01 10 121214686 121214686 G A GRK5 3'UTR 0.21 TCGA-L5-A4OH-01 10 134660585 134660585 C T TTC40 Missense_Mutation p.A2040T 0.72 tolerated(0.06) possibly_damaging(0.541) TCGA-L5-A4OH-01 10 300482 300482 G A ZMYND11 3'UTR 0.16 TCGA-L5-A4OH-01 10 45478045 45478045 A G RASSF4 Missense_Mutation p.Q72R 0.11 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OH-01 10 78869966 78869966 G A KCNMA1 Missense_Mutation p.R366C 0.44 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OH-01 10 88703372 88703372 C T MMRN2 Missense_Mutation p.R390K 0.74 tolerated(0.49) benign(0.038) TCGA-L5-A4OH-01 11 107537356 107537356 C A ELMOD1 3'UTR 0.43 TCGA-L5-A4OH-01 11 109295572 109295572 G A C11orf87 3'UTR 0.43 TCGA-L5-A4OH-01 11 111746108 111746108 G T FDXACB1 Silent p.I471I 0.55 TCGA-L5-A4OH-01 11 114401556 114401556 T C NXPE1 5'UTR 0.31 TCGA-L5-A4OH-01 11 120702727 120702727 C T GRIK4 Silent p.T226T 0.41 TCGA-L5-A4OH-01 11 128682124 128682124 G A FLI1 3'UTR 0.16 TCGA-L5-A4OH-01 11 30557580 30557580 C T MPPED2 Missense_Mutation p.G91R 0.18 deleterious(0) probably_damaging(0.931) TCGA-L5-A4OH-01 11 3123435 3123435 C G OSBPL5 Missense_Mutation p.R468P 0.67 tolerated(0.07) possibly_damaging(0.546) TCGA-L5-A4OH-01 11 35282347 35282348 - T SLC1A2 3'UTR 0.28 TCGA-L5-A4OH-01 11 46912004 46912004 T C LRP4 Missense_Mutation p.E580G 0.12 deleterious(0) probably_damaging(0.985) TCGA-L5-A4OH-01 11 4967901 4967901 C T OR51A4 Missense_Mutation p.A144T 0.14 tolerated(0.13) benign(0.012) TCGA-L5-A4OH-01 11 56000574 56000574 A C OR5T2 Missense_Mutation p.F30V 0.38 tolerated_low_confidence(0.07) benign(0) TCGA-L5-A4OH-01 11 61277317 61277317 G A LRRC10B Missense_Mutation p.A283T 0.27 deleterious_low_confidence(0) benign(0) TCGA-L5-A4OH-01 11 64900709 64900709 C T SYVN1 Silent p.Q49Q 0.16 TCGA-L5-A4OH-01 11 78419504 78419504 G A TENM4 Missense_Mutation p.R1371C 0.50 deleterious(0) possibly_damaging(0.676) TCGA-L5-A4OH-01 11 8737209 8737209 C G ST5 Missense_Mutation p.D596H 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A4OH-01 12 104100586 104100586 C T STAB2 Missense_Mutation p.A1338V 0.33 deleterious(0.02) possibly_damaging(0.787) TCGA-L5-A4OH-01 12 124298415 124298415 G T DNAH10 Missense_Mutation p.D1128Y 0.20 possibly_damaging(0.75) TCGA-L5-A4OH-01 13 23808769 23808769 G T SGCG Missense_Mutation p.C72F 0.32 deleterious(0) benign(0) TCGA-L5-A4OH-01 13 58207353 58207353 G A PCDH17 Missense_Mutation p.A225T 0.38 deleterious(0) possibly_damaging(0.466) TCGA-L5-A4OH-01 13 66877744 66877744 G T PCDH9 3'UTR 0.22 TCGA-L5-A4OH-01 13 88328449 88328449 G A SLITRK5 Missense_Mutation p.R269H 0.44 tolerated(0.49) benign(0.275) TCGA-L5-A4OH-01 14 20711654 20711654 T - OR11H4 Frame_Shift_Del p.Q237Rfs*31 0.27 TCGA-L5-A4OH-01 14 22476281 22476281 C T TRAV19 Missense_Mutation p.R71W 0.53 deleterious(0) benign(0.054) TCGA-L5-A4OH-01 14 30066865 30066865 T G PRKD1 Silent p.R756R 0.45 TCGA-L5-A4OH-01 14 38680183 38680183 G A SSTR1 3'UTR 0.49 TCGA-L5-A4OH-01 15 40764412 40764412 G A CHST14 Missense_Mutation p.E334K 0.43 tolerated(0.21) benign(0.281) TCGA-L5-A4OH-01 15 42289437 42289437 C T PLA2G4E Missense_Mutation p.R332Q 0.33 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OH-01 16 67006779 67006779 C T CES3 Missense_Mutation p.P515S 0.19 deleterious(0.02) probably_damaging(1) TCGA-L5-A4OH-01 16 67692970 67692970 G A ACD Missense_Mutation p.S255F 0.44 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OH-01 16 71571171 71571171 C T CHST4 Silent p.N197N 0.24 TCGA-L5-A4OH-01 16 75512700 75512700 G A CHST6 Missense_Mutation p.R343C 0.79 deleterious(0.05) possibly_damaging(0.849) TCGA-L5-A4OH-01 17 27591470 27591470 G A NUFIP2 3'UTR 0.17 TCGA-L5-A4OH-01 17 27591510 27591510 G A NUFIP2 3'UTR 0.22 TCGA-L5-A4OH-01 17 33953659 33953659 C A AP2B1 Missense_Mutation p.P246T 0.03 deleterious(0) probably_damaging(0.944) TCGA-L5-A4OH-01 17 39274494 39274494 C T KRTAP4-11 Missense_Mutation p.C25Y 0.61 deleterious(0.02) unknown(0) TCGA-L5-A4OH-01 17 43012200 43012200 T C KIF18B Missense_Mutation p.Q192R 0.34 deleterious(0.03) possibly_damaging(0.625) TCGA-L5-A4OH-01 17 43228805 43228805 C T HEXIM1 3'UTR 0.35 TCGA-L5-A4OH-01 17 58520687 58520687 A G APPBP2 3'UTR 0.16 TCGA-L5-A4OH-01 17 72541893 72541893 C T CD300C Missense_Mutation p.R10Q 0.38 deleterious(0.01) unknown(0) TCGA-L5-A4OH-01 17 78318720 78318720 G T RNF213 Missense_Mutation p.E2195D 0.23 benign(0.445) TCGA-L5-A4OH-01 18 25727694 25727694 C T CDH2 Missense_Mutation p.D39N 0.31 tolerated(0.23) benign(0.007) TCGA-L5-A4OH-01 18 43529453 43529453 G A EPG5 Silent p.I498I 0.50 TCGA-L5-A4OH-01 19 18053577 18053577 C T CCDC124 Missense_Mutation p.T91M 0.53 tolerated(0.09) benign(0.06) TCGA-L5-A4OH-01 19 19448017 19448017 G A MAU2 Silent p.A133A 0.30 TCGA-L5-A4OH-01 19 22939535 22939535 T C ZNF99 3'Flank 0.41 TCGA-L5-A4OH-01 19 37677678 37677678 T C ZNF585B Missense_Mutation p.K254R 0.85 tolerated(0.45) possibly_damaging(0.488) TCGA-L5-A4OH-01 19 39955437 39955437 G A SUPT5H Splice_Site p.X209_splice 0.16 TCGA-L5-A4OH-01 19 42364856 42364858 TAC AA RPS19 Frame_Shift_Del p.T5Mfs*2 0.11 TCGA-L5-A4OH-01 19 4491828 4491828 A G HDGFRP2 Missense_Mutation p.K225R 0.12 tolerated(0.11) unknown(0) TCGA-L5-A4OH-01 19 47539368 47539368 T G NPAS1 Silent p.L223L 0.43 TCGA-L5-A4OH-01 19 47539377 47539377 C A NPAS1 Silent p.T226T 0.43 TCGA-L5-A4OH-01 19 51462298 51462298 C T KLK6 3'UTR 0.23 TCGA-L5-A4OH-01 19 52618234 52618234 C T ZNF616 Missense_Mutation p.R728Q 0.12 tolerated(0.84) benign(0.018) TCGA-L5-A4OH-01 1 10521644 10521644 G A DFFA Missense_Mutation p.T300M 0.62 tolerated(0.16) benign(0.001) TCGA-L5-A4OH-01 1 11116694 11116694 C T SRM Missense_Mutation p.D168N 0.53 deleterious(0) probably_damaging(0.992) TCGA-L5-A4OH-01 1 11116718 11116718 T C SRM Missense_Mutation p.M160V 0.52 tolerated(0.12) benign(0.375) TCGA-L5-A4OH-01 1 115167822 115167822 T C DENND2C Missense_Mutation p.K262E 0.18 tolerated(0.27) benign(0.118) TCGA-L5-A4OH-01 1 116280873 116280873 A G CASQ2 Silent p.I168I 0.34 TCGA-L5-A4OH-01 1 153043267 153043267 C A SPRR2B Missense_Mutation p.V17L 0.18 tolerated_low_confidence(0.1) unknown(0) TCGA-L5-A4OH-01 1 154307008 154307008 G A ATP8B2 Missense_Mutation p.G293S 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A4OH-01 1 168014359 168014359 C T DCAF6 Missense_Mutation p.H718Y 0.65 tolerated_low_confidence(0.58) benign(0.138) TCGA-L5-A4OH-01 1 172571303 172571303 G A SUCO Missense_Mutation p.D1040N 0.62 tolerated(0.43) benign(0.009) TCGA-L5-A4OH-01 1 179659906 179659906 G A TDRD5 Missense_Mutation p.R979H 0.21 tolerated(0.08) benign(0.282) TCGA-L5-A4OH-01 1 180006226 180006226 T C CEP350 Splice_Site p.X1370_splice 0.34 TCGA-L5-A4OH-01 1 186645102 186645102 G A PTGS2 Silent p.Y395Y 0.51 TCGA-L5-A4OH-01 1 196300382 196300382 T G KCNT2 Missense_Mutation p.K669N 0.17 deleterious(0) possibly_damaging(0.78) TCGA-L5-A4OH-01 1 201981121 201981121 G A ELF3 Nonsense_Mutation p.W67* 0.68 TCGA-L5-A4OH-01 1 204393562 204393562 C T PIK3C2B 3'UTR 0.44 TCGA-L5-A4OH-01 1 206760078 206760078 G T RASSF5 Intron 0.62 TCGA-L5-A4OH-01 1 216262423 216262423 T G USH2A Missense_Mutation p.K1606T 0.17 benign(0.038) TCGA-L5-A4OH-01 1 22175189 22175189 G A HSPG2 Missense_Mutation p.P2562S 0.50 probably_damaging(0.997) TCGA-L5-A4OH-01 1 240555817 240555817 T G FMN2 Missense_Mutation p.I1622S 0.11 benign(0.127) TCGA-L5-A4OH-01 1 46497074 46497074 C T MAST2 Nonsense_Mutation p.R1002* 0.15 TCGA-L5-A4OH-01 20 13869129 13869129 T C SEL1L2 Missense_Mutation p.I193M 0.48 deleterious(0) possibly_damaging(0.794) TCGA-L5-A4OH-01 20 35539668 35539668 C G SAMHD1 Missense_Mutation p.R408P 0.06 tolerated(0.28) benign(0.005) TCGA-L5-A4OH-01 20 40944500 40944500 A C PTPRT Missense_Mutation p.L668V 0.19 deleterious(0) benign(0.133) TCGA-L5-A4OH-01 21 28212680 28212680 G A ADAMTS1 Missense_Mutation p.P527L 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OH-01 21 34001375 34001375 C A SYNJ1 3'Flank 0.52 TCGA-L5-A4OH-01 22 19711098 19711098 C T GP1BB Silent p.G2G 0.78 TCGA-L5-A4OH-01 2 128364867 128364867 C A MYO7B Silent p.V837V 0.39 TCGA-L5-A4OH-01 2 132021884 132021884 C T POTEE Silent p.N952N 0.23 TCGA-L5-A4OH-01 2 152550851 152550851 T G NEB Missense_Mutation p.K628Q 0.17 possibly_damaging(0.713) TCGA-L5-A4OH-01 2 163134715 163134716 - T IFIH1 Frame_Shift_Ins p.A589Sfs*21 0.39 TCGA-L5-A4OH-01 2 189860905 189860905 G A COL3A1 Splice_Site p.X554_splice 0.17 TCGA-L5-A4OH-01 2 192700728 192700728 G A SDPR Missense_Mutation p.A400V 0.56 tolerated_low_confidence(0.29) benign(0.001) TCGA-L5-A4OH-01 2 201457927 201457927 G A AOX1 Splice_Site p.X35_splice 0.15 TCGA-L5-A4OH-01 2 202357193 202357193 C T ALS2CR11 Missense_Mutation p.E1291K 0.31 tolerated(0.21) benign(0.009) TCGA-L5-A4OH-01 2 212483991 212483991 C A ERBB4 Missense_Mutation p.V738L 0.32 tolerated(0.08) benign(0.016) TCGA-L5-A4OH-01 2 233990466 233990466 G A INPP5D Missense_Mutation p.V121M 0.45 tolerated(0.23) benign(0.003) TCGA-L5-A4OH-01 2 29295619 29295619 A C C2orf71 Missense_Mutation p.C503W 0.19 tolerated(0.18) possibly_damaging(0.575) TCGA-L5-A4OH-01 2 32756503 32756513 AATCTTTGCTT - BIRC6 Frame_Shift_Del p.E4059Gfs*23 0.41 TCGA-L5-A4OH-01 2 677447 677447 C A TMEM18 5'Flank 0.22 TCGA-L5-A4OH-01 2 80816505 80816505 G C CTNNA2 Missense_Mutation p.S695T 0.28 tolerated(0.51) benign(0.005) TCGA-L5-A4OH-01 2 9676030 9676030 A G ADAM17 Missense_Mutation p.L128P 0.44 tolerated(0.16) possibly_damaging(0.861) TCGA-L5-A4OH-01 3 122180154 122180154 G T KPNA1 Missense_Mutation p.P117T 0.20 deleterious(0) possibly_damaging(0.686) TCGA-L5-A4OH-01 3 27433267 27433267 G A SLC4A7 Silent p.F1041F 0.21 TCGA-L5-A4OH-01 3 3139909 3139909 G T IL5RA Missense_Mutation p.R145S 0.44 tolerated(0.35) benign(0.055) TCGA-L5-A4OH-01 3 40085745 40085745 C T MYRIP Silent p.C105C 0.48 TCGA-L5-A4OH-01 4 108870547 108870547 C T CYP2U1 Missense_Mutation p.P444S 0.17 deleterious(0.04) probably_damaging(0.954) TCGA-L5-A4OH-01 4 126413866 126413866 A C FAT4 3'UTR 0.49 TCGA-L5-A4OH-01 4 2077195 2077195 C T POLN Silent p.Q813Q 0.55 TCGA-L5-A4OH-01 4 46930343 46930343 C A GABRA4 Missense_Mutation p.A522S 0.13 tolerated(0.68) probably_damaging(0.999) TCGA-L5-A4OH-01 4 5721031 5721031 G A EVC Silent p.S77S 0.32 TCGA-L5-A4OH-01 4 68928291 68928291 C T TMPRSS11F Intron 0.40 TCGA-L5-A4OH-01 4 76532463 76532463 C T CDKL2 Missense_Mutation p.R149Q 0.38 deleterious(0.01) probably_damaging(0.978) TCGA-L5-A4OH-01 5 101569891 101569891 T G SLCO4C1 3'UTR 0.71 TCGA-L5-A4OH-01 5 130500767 130500767 G T HINT1 Intron 0.24 TCGA-L5-A4OH-01 5 140176802 140176802 G A PCDHA2 Silent p.S751S 0.60 TCGA-L5-A4OH-01 5 140242819 140242819 G A AC005609.1 Missense_Mutation p.R53C 0.60 tolerated_low_confidence(0.1) possibly_damaging(0.835) TCGA-L5-A4OH-01 5 140730999 140730999 A - PCDHGB1 Frame_Shift_Del p.E391Dfs*11 0.40 TCGA-L5-A4OH-01 5 17354522 17354522 G A CTD-2139B15.2 RNA 0.14 TCGA-L5-A4OH-01 5 24511519 24511519 G A CDH10 Nonsense_Mutation p.R307* 0.46 TCGA-L5-A4OH-01 5 37183457 37183457 C T C5orf42 Missense_Mutation p.S1609N 0.37 tolerated(0.1) benign(0.076) TCGA-L5-A4OH-01 6 101847171 101847171 G A GRIK2 Silent p.P6P 0.31 TCGA-L5-A4OH-01 6 10586175 10586175 T C GCNT2 Intron 0.47 TCGA-L5-A4OH-01 6 111913033 111913033 T G TRAF3IP2 Missense_Mutation p.Q86P 0.16 deleterious(0.03) benign(0.053) TCGA-L5-A4OH-01 6 119301428 119301428 G A FAM184A Nonsense_Mutation p.R726* 0.25 TCGA-L5-A4OH-01 6 121768889 121768889 G A GJA1 Missense_Mutation p.R299H 0.43 tolerated(0.37) possibly_damaging(0.735) TCGA-L5-A4OH-01 6 152542556 152542559 CATA - SYNE1 Splice_Site p.X7219_splice 0.18 TCGA-L5-A4OH-01 6 157528490 157528490 C A ARID1B Missense_Mutation p.P2072H 0.26 probably_damaging(0.983) TCGA-L5-A4OH-01 6 27279309 27279309 G A POM121L2 Missense_Mutation p.P214L 0.53 tolerated(0.09) benign(0.315) TCGA-L5-A4OH-01 6 51923170 51923170 C T PKHD1 Missense_Mutation p.R488Q 0.62 tolerated(0.31) benign(0.009) TCGA-L5-A4OH-01 6 90398491 90398491 A G MDN1 Missense_Mutation p.L3687P 0.27 probably_damaging(0.95) TCGA-L5-A4OH-01 7 106762438 106762438 G A PRKAR2B Missense_Mutation p.A129T 0.67 tolerated(0.97) benign(0) TCGA-L5-A4OH-01 7 107198549 107198549 C T COG5 Missense_Mutation p.D67N 0.35 tolerated(0.05) benign(0.187) TCGA-L5-A4OH-01 7 112723818 112723818 A T GPR85 Missense_Mutation p.F320Y 0.16 tolerated(1) benign(0.007) TCGA-L5-A4OH-01 7 123672272 123672272 G A TMEM229A Silent p.F262F 0.67 TCGA-L5-A4OH-01 7 131908351 131908351 G A PLXNA4 Missense_Mutation p.R678W 0.18 deleterious(0) possibly_damaging(0.895) TCGA-L5-A4OH-01 7 142964732 142964732 C G GSTK1 Missense_Mutation p.S204C 0.40 deleterious(0) possibly_damaging(0.8) TCGA-L5-A4OH-01 7 35673272 35673272 C T HERPUD2 3'UTR 0.47 TCGA-L5-A4OH-01 7 40228179 40228179 A G SUGCT Silent p.K111K 0.24 TCGA-L5-A4OH-01 7 62809620 62809620 C T AC006455.1 5'UTR 0.20 TCGA-L5-A4OH-01 7 70255539 70255539 G A AUTS2 Missense_Mutation p.D1113N 0.60 deleterious(0) benign(0.114) TCGA-L5-A4OH-01 7 72951642 72951642 C T BCL7B Missense_Mutation p.A199T 0.20 tolerated_low_confidence(0.17) benign(0.004) TCGA-L5-A4OH-01 7 750980 750980 C T PRKAR1B Missense_Mutation p.E55K 0.31 tolerated(0.07) probably_damaging(0.952) TCGA-L5-A4OH-01 7 87150168 87150168 A C ABCB1 Missense_Mutation p.F904V 0.30 tolerated(0.11) benign(0.024) TCGA-L5-A4OH-01 8 100729456 100729456 G A VPS13B Missense_Mutation p.S2196N 0.11 tolerated(0.17) benign(0.213) TCGA-L5-A4OH-01 8 104831755 104831755 G A RIMS2 Intron 0.17 TCGA-L5-A4OH-01 8 110516714 110516714 G T PKHD1L1 Missense_Mutation p.D3663Y 0.33 deleterious(0) probably_damaging(0.979) TCGA-L5-A4OH-01 8 75924771 75924771 G T CRISPLD1 Missense_Mutation p.G121V 0.47 deleterious(0.01) possibly_damaging(0.906) TCGA-L5-A4OH-01 8 95690544 95690544 G A ESRP1 Missense_Mutation p.A589T 0.57 tolerated(0.34) benign(0.023) TCGA-L5-A4OH-01 9 107555071 107555071 G A ABCA1 Missense_Mutation p.T1918M 0.16 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OH-01 9 108380327 108380327 T C FKTN Missense_Mutation p.L333S 0.13 tolerated(1) benign(0.001) TCGA-L5-A4OH-01 9 113562836 113562836 A T MUSK Missense_Mutation p.L726F 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A4OH-01 9 115928423 115928423 G A FKBP15 Missense_Mutation p.R1199C 0.28 deleterious_low_confidence(0.05) benign(0.004) TCGA-L5-A4OH-01 9 131036245 131036245 C T GOLGA2 Missense_Mutation p.E31K 0.46 deleterious(0) benign(0.397) TCGA-L5-A4OH-01 9 133738375 133738375 G A ABL1 Missense_Mutation p.G278S 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A4OH-01 9 32631218 32631218 G A TAF1L Missense_Mutation p.R1454C 0.73 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OH-01 9 91262478 91262478 G A RP13-60M5.2 RNA 0.10 TCGA-L5-A4OH-01 X 142716011 142716011 C A SLITRK4 3'UTR 0.68 TCGA-L5-A4OH-01 X 153069014 153069014 G A PDZD4 Missense_Mutation p.R702W 0.38 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OH-01 X 53621557 53621557 A T HUWE1 Silent p.V1135V 0.62 TCGA-L5-A4OH-01 X 55020450 55020450 C T PFKFB1 5'UTR 0.68 TCGA-L5-A4OI-01 10 101296177 101296177 C T NKX2-3 3'UTR 0.33 TCGA-L5-A4OI-01 10 101953783 101953783 T C CHUK Silent p.G644G 0.36 TCGA-L5-A4OI-01 10 102778605 102778605 C T PDZD7 Missense_Mutation p.R433H 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 10 103771512 103771512 G T C10orf76 Missense_Mutation p.Q267K 0.16 tolerated(0.32) benign(0.01) TCGA-L5-A4OI-01 10 103826768 103826768 C A HPS6 Missense_Mutation p.L513I 0.31 deleterious(0.02) benign(0.321) TCGA-L5-A4OI-01 10 104126162 104126162 C T GBF1 Nonsense_Mutation p.R777* 0.45 TCGA-L5-A4OI-01 10 104136853 104136853 G A GBF1 Missense_Mutation p.V1483M 0.43 tolerated(0.12) benign(0.048) TCGA-L5-A4OI-01 10 104162673 104162673 A - PSD 3'UTR 0.43 TCGA-L5-A4OI-01 10 104175781 104175782 - GT PSD Frame_Shift_Ins p.S251Pfs*44 0.11 TCGA-L5-A4OI-01 10 104235656 104235656 C T TMEM180 Missense_Mutation p.T490M 0.38 deleterious(0.01) probably_damaging(0.969) TCGA-L5-A4OI-01 10 104414960 104414960 G A TRIM8 Missense_Mutation p.E264K 0.28 tolerated(0.45) benign(0.036) TCGA-L5-A4OI-01 10 104679763 104679763 C - CNNM2 Frame_Shift_Del p.L511* 0.44 TCGA-L5-A4OI-01 10 105214836 105214836 G T CALHM1 3'UTR 0.33 TCGA-L5-A4OI-01 10 105353783 105353783 G A SH3PXD2A 3'Flank 0.44 TCGA-L5-A4OI-01 10 105785926 105785927 - A SLK 3'UTR 0.60 TCGA-L5-A4OI-01 10 106074319 106074319 G A ITPRIP Silent p.A497A 0.33 TCGA-L5-A4OI-01 10 11207539 11207539 C T CELF2 Silent p.P55P 0.33 TCGA-L5-A4OI-01 10 112266859 112266859 A G DUSP5 Missense_Mutation p.D232G 0.32 deleterious(0) probably_damaging(0.984) TCGA-L5-A4OI-01 10 11291153 11291153 A - CELF2 Frame_Shift_Del p.K132Sfs*12 0.31 TCGA-L5-A4OI-01 10 114181709 114181709 C T ACSL5 Silent p.H520H 0.33 TCGA-L5-A4OI-01 10 114575248 114575249 CT - VTI1A 3'UTR 0.50 TCGA-L5-A4OI-01 10 114925542 114925542 C T TCF7L2 Silent p.L540L 0.40 TCGA-L5-A4OI-01 10 115489357 115489357 T - CASP7 3'UTR 0.37 TCGA-L5-A4OI-01 10 115804315 115804315 G A ADRB1 Missense_Mutation p.V142M 0.39 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 10 115963887 115963887 T C TDRD1 Missense_Mutation p.V346A 0.44 deleterious(0) probably_damaging(0.932) TCGA-L5-A4OI-01 10 116205099 116205099 C T ABLIM1 Missense_Mutation p.R600Q 0.39 tolerated(0.08) benign(0.084) TCGA-L5-A4OI-01 10 116621716 116621716 A - FAM160B1 3'UTR 0.41 TCGA-L5-A4OI-01 10 118434562 118434562 A C HSPA12A Silent p.R586R 0.35 TCGA-L5-A4OI-01 10 118893539 118893539 C T VAX1 Missense_Mutation p.E329K 0.47 deleterious_low_confidence(0.01) benign(0.38) TCGA-L5-A4OI-01 10 119305214 119305214 G A EMX2 Missense_Mutation p.A160T 0.43 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 10 120095902 120095902 C T FAM204A Missense_Mutation p.G9D 0.43 tolerated(0.08) possibly_damaging(0.823) TCGA-L5-A4OI-01 10 12292343 12292343 T C CDC123 3'UTR 0.28 TCGA-L5-A4OI-01 10 124152781 124152781 G A PLEKHA1 Missense_Mutation p.S22N 0.52 deleterious(0.01) probably_damaging(0.979) TCGA-L5-A4OI-01 10 124711510 124711510 T - C10orf88 Frame_Shift_Del p.N134Ifs*2 0.33 TCGA-L5-A4OI-01 10 124907930 124907930 G A HMX2 Silent p.P12P 0.53 TCGA-L5-A4OI-01 10 126692022 126692022 C T CTBP2 Missense_Mutation p.R573H 0.41 deleterious(0.01) possibly_damaging(0.899) TCGA-L5-A4OI-01 10 127525149 127525149 G A DHX32 3'UTR 0.28 TCGA-L5-A4OI-01 10 128925931 128925931 A T DOCK1 Splice_Site p.X897_splice 0.39 TCGA-L5-A4OI-01 10 12940451 12940451 G A CCDC3 Missense_Mutation p.R260W 0.36 tolerated_low_confidence(0.14) possibly_damaging(0.736) TCGA-L5-A4OI-01 10 129536832 129536832 A G FOXI2 Missense_Mutation p.D187G 0.39 deleterious(0) probably_damaging(0.959) TCGA-L5-A4OI-01 10 129877846 129877846 A G PTPRE Missense_Mutation p.T639A 0.38 tolerated(0.15) benign(0.342) TCGA-L5-A4OI-01 10 129901402 129901402 C T MKI67 Missense_Mutation p.S2901N 0.11 tolerated(0.18) benign(0.01) TCGA-L5-A4OI-01 10 129903982 129903982 G A MKI67 Missense_Mutation p.A2041V 0.44 tolerated(1) benign(0.003) TCGA-L5-A4OI-01 10 129904386 129904386 C T MKI67 Silent p.T1906T 0.42 TCGA-L5-A4OI-01 10 131634785 131634785 T - EBF3 3'UTR 0.36 TCGA-L5-A4OI-01 10 131761680 131761680 G A EBF3 Missense_Mutation p.P81L 0.30 tolerated(0.06) probably_damaging(1) TCGA-L5-A4OI-01 10 132890806 132890806 C A TCERG1L 3'UTR 0.42 TCGA-L5-A4OI-01 10 134036380 134036380 C T STK32C Silent p.P368P 0.57 TCGA-L5-A4OI-01 10 134166616 134166616 C T LRRC27 Intron 0.44 TCGA-L5-A4OI-01 10 134628225 134628225 G - TTC40 Frame_Shift_Del p.P2405Lfs*5 0.36 TCGA-L5-A4OI-01 10 134664663 134664663 C T TTC40 Silent p.A1907A 0.46 TCGA-L5-A4OI-01 10 134902466 134902466 G - GPR123 Intron 0.23 TCGA-L5-A4OI-01 10 135038440 135038440 G - KNDC1 3'UTR 0.31 TCGA-L5-A4OI-01 10 135107236 135107236 C A TUBGCP2 Silent p.V246V 0.39 TCGA-L5-A4OI-01 10 135116332 135116332 C T TUBGCP2 Silent p.P38P 0.22 TCGA-L5-A4OI-01 10 13696452 13696452 G - FRMD4A Frame_Shift_Del p.P1005Qfs*8 0.37 TCGA-L5-A4OI-01 10 14951099 14951101 CTT - DCLRE1C In_Frame_Del p.E462del 0.30 TCGA-L5-A4OI-01 10 15175251 15175251 G A NMT2 Missense_Mutation p.A168V 0.35 tolerated(0.09) benign(0.403) TCGA-L5-A4OI-01 10 1569024 1569024 G A ADARB2 Intron 0.38 TCGA-L5-A4OI-01 10 16990497 16990497 G A CUBN Missense_Mutation p.T1730M 0.41 tolerated(0.1) probably_damaging(0.939) TCGA-L5-A4OI-01 10 17165597 17165597 G - CUBN Frame_Shift_Del p.P160Hfs*23 0.24 TCGA-L5-A4OI-01 10 17195354 17195354 A G TRDMT1 Intron 0.28 TCGA-L5-A4OI-01 10 21803863 21803863 A C SKIDA1 3'UTR 0.26 TCGA-L5-A4OI-01 10 22045498 22045498 T - DNAJC1 3'UTR 0.32 TCGA-L5-A4OI-01 10 22615824 22615824 A - BMI1 Frame_Shift_Del p.T41Rfs*27 0.31 TCGA-L5-A4OI-01 10 23611349 23611349 G A C10orf67 Silent p.L150L 0.24 TCGA-L5-A4OI-01 10 25288338 25288339 AG - ENKUR Frame_Shift_Del p.L72Tfs*7 0.36 TCGA-L5-A4OI-01 10 25314401 25314401 T - THNSL1 3'UTR 0.32 TCGA-L5-A4OI-01 10 27035432 27035432 C A PDSS1 3'UTR 0.40 TCGA-L5-A4OI-01 10 27368033 27368033 G A ANKRD26 Silent p.L266L 0.43 TCGA-L5-A4OI-01 10 27459056 27459056 A - MASTL Frame_Shift_Del p.K391Nfs*12 0.25 TCGA-L5-A4OI-01 10 27702455 27702455 G A PTCHD3 Missense_Mutation p.A242V 0.43 tolerated(0.45) benign(0.01) TCGA-L5-A4OI-01 10 27702750 27702750 C T PTCHD3 Missense_Mutation p.A144T 0.52 tolerated(0.45) benign(0.099) TCGA-L5-A4OI-01 10 28233164 28233164 C - ARMC4 Frame_Shift_Del p.G577Vfs*9 0.35 TCGA-L5-A4OI-01 10 29820936 29820936 C T SVIL Silent p.S668S 0.24 TCGA-L5-A4OI-01 10 300299 300299 A - ZMYND11 3'UTR 0.53 TCGA-L5-A4OI-01 10 31610403 31610403 A G ZEB1 Intron 0.42 TCGA-L5-A4OI-01 10 33137552 33137552 G A C10ORF68 Missense_Mutation p.M510I 0.37 tolerated(0.12) benign(0.003) TCGA-L5-A4OI-01 10 35360127 35360127 G A CUL2 Missense_Mutation p.S59L 0.54 deleterious(0.01) benign(0.024) TCGA-L5-A4OI-01 10 42928728 42928728 C T CCNYL2 RNA 0.33 TCGA-L5-A4OI-01 10 43600486 43600486 G A RET Missense_Mutation p.E238K 0.40 tolerated(0.46) benign(0.054) TCGA-L5-A4OI-01 10 43624209 43624209 G - RET 3'UTR 0.40 TCGA-L5-A4OI-01 10 46121400 46121400 A - ZFAND4 Frame_Shift_Del p.L624Cfs*8 0.48 TCGA-L5-A4OI-01 10 46584455 46584455 T - PTPN20A Frame_Shift_Del p.N187Tfs*30 0.09 TCGA-L5-A4OI-01 10 4872921 4872921 C T AKR1E2 Missense_Mutation p.R32W 0.35 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OI-01 10 48930118 48930118 T C RNA5SP314 5'Flank 0.19 TCGA-L5-A4OI-01 10 49207770 49207770 G A FAM25C Silent p.A10A 0.17 TCGA-L5-A4OI-01 10 49364930 49364931 - C FRMPD2 3'UTR 0.34 TCGA-L5-A4OI-01 10 50684358 50684358 T C ERCC6 Splice_Site p.X763_splice 0.47 TCGA-L5-A4OI-01 10 50819809 50819809 C T SLC18A3 Silent p.G341G 0.45 TCGA-L5-A4OI-01 10 50820731 50820731 C A SLC18A3 3'UTR 0.33 TCGA-L5-A4OI-01 10 50827789 50827789 G A CHAT Missense_Mutation p.V136M 0.29 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 10 50854670 50854670 G A CHAT Missense_Mutation p.G411R 0.37 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 10 52066312 52066312 T - SGMS1 3'UTR 0.57 TCGA-L5-A4OI-01 10 53458651 53458656 CCAGGG - CSTF2T In_Frame_Del p.P219_G220del 0.25 TCGA-L5-A4OI-01 10 5499676 5499677 TG - NET1 3'UTR 0.26 TCGA-L5-A4OI-01 10 55566542 55566542 C - PCDH15 Frame_Shift_Del p.A1615Pfs*12 0.27 TCGA-L5-A4OI-01 10 55719505 55719505 G A PCDH15 Nonsense_Mutation p.Q1037* 0.43 TCGA-L5-A4OI-01 10 62645896 62645897 - C RHOBTB1 Frame_Shift_Ins p.S517Vfs*9 0.27 TCGA-L5-A4OI-01 10 6277227 6277227 T - PFKFB3 3'UTR 0.25 TCGA-L5-A4OI-01 10 63212571 63212571 G A TMEM26 Intron 0.28 TCGA-L5-A4OI-01 10 64573471 64573473 GGC - EGR2 In_Frame_Del p.A309del 0.34 TCGA-L5-A4OI-01 10 64927496 64927496 G T JMJD1C 3'UTR 0.34 TCGA-L5-A4OI-01 10 64974152 64974152 T C JMJD1C Missense_Mutation p.E592G 0.33 deleterious_low_confidence(0.01) benign(0.371) TCGA-L5-A4OI-01 10 71144198 71144198 C T HK1 Silent p.Y564Y 0.51 TCGA-L5-A4OI-01 10 71267269 71267269 T - TSPAN15 3'UTR 0.39 TCGA-L5-A4OI-01 10 71332332 71332332 G A NEUROG3 Silent p.C156C 0.45 TCGA-L5-A4OI-01 10 71391530 71391530 G A C10orf35 Missense_Mutation p.V11M 0.35 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 10 71658500 71658500 A - COL13A1 Frame_Shift_Del p.R256Gfs*87 0.26 TCGA-L5-A4OI-01 10 71697406 71697406 G A COL13A1 Missense_Mutation p.D594N 0.55 tolerated(0.14) probably_damaging(0.967) TCGA-L5-A4OI-01 10 72541636 72541636 G T TBATA Silent p.T66T 0.57 TCGA-L5-A4OI-01 10 73111425 73111425 T - SLC29A3 Frame_Shift_Del p.F165Lfs*9 0.34 TCGA-L5-A4OI-01 10 73768016 73768016 C T CHST3 Silent p.H409H 0.48 TCGA-L5-A4OI-01 10 73827995 73827995 C T SPOCK2 Missense_Mutation p.C180Y 0.40 deleterious(0) benign(0.115) TCGA-L5-A4OI-01 10 74894488 74894488 T C ECD Silent p.V629V 0.09 TCGA-L5-A4OI-01 10 75407478 75407478 C T SYNPO2L Silent p.T644T 0.17 TCGA-L5-A4OI-01 10 75415607 75415608 - C SYNPO2L Frame_Shift_Ins p.A25Gfs*11 0.52 TCGA-L5-A4OI-01 10 75434051 75434051 T C AGAP5 3'UTR 0.14 TCGA-L5-A4OI-01 10 75434061 75434061 C A AGAP5 3'UTR 0.12 TCGA-L5-A4OI-01 10 75673417 75673417 C T PLAU Missense_Mutation p.A194V 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A4OI-01 10 7801789 7801789 A - KIN Intron 0.31 TCGA-L5-A4OI-01 10 78646911 78646912 AA - KCNMA1 3'Flank 0.56 TCGA-L5-A4OI-01 10 79814587 79814587 C A RPS24 Missense_Mutation p.A230D 0.28 deleterious_low_confidence(0) unknown(0) TCGA-L5-A4OI-01 10 8105978 8105979 - G GATA3 Frame_Shift_Ins p.A269Gfs*35 0.34 TCGA-L5-A4OI-01 10 81273632 81273632 C T EIF5AL1 3'UTR 0.33 TCGA-L5-A4OI-01 10 82331259 82331259 G A SH2D4B Silent p.A140A 0.29 TCGA-L5-A4OI-01 10 86133433 86133433 C A CCSER2 Missense_Mutation p.D492E 0.32 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OI-01 10 87361805 87361805 C T GRID1 3'UTR 0.37 TCGA-L5-A4OI-01 10 88421075 88421075 C T OPN4 Missense_Mutation p.P346S 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 10 88719881 88719881 G T SNCG Missense_Mutation p.R96L 0.43 deleterious(0.01) possibly_damaging(0.471) TCGA-L5-A4OI-01 10 89726584 89726585 - A PTEN 3'UTR 0.44 TCGA-L5-A4OI-01 10 90438259 90438259 G T LIPF Missense_Mutation p.G350C 0.34 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 10 91196023 91196023 C A SLC16A12 Missense_Mutation p.G361V 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 10 91497987 91497987 A - KIF20B Frame_Shift_Del p.N1092Mfs*11 0.33 TCGA-L5-A4OI-01 10 93811816 93811818 AAT - CPEB3 3'UTR 0.47 TCGA-L5-A4OI-01 10 95718520 95718520 C T PIPSL RNA 0.33 TCGA-L5-A4OI-01 10 95719860 95719860 G A PIPSL RNA 0.40 TCGA-L5-A4OI-01 10 96352051 96352051 A - HELLS Frame_Shift_Del p.R614Efs*11 0.33 TCGA-L5-A4OI-01 10 97951715 97951715 T - BLNK 3'UTR 0.46 TCGA-L5-A4OI-01 10 97969609 97969609 G A BLNK Missense_Mutation p.P244L 0.33 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 10 98281178 98281178 A - TM9SF3 3'UTR 0.32 TCGA-L5-A4OI-01 10 98281458 98281458 A T TM9SF3 3'UTR 0.41 TCGA-L5-A4OI-01 11 100962608 100962608 C A PGR Splice_Site p.X597_splice 0.39 TCGA-L5-A4OI-01 11 101793464 101793465 - T KIAA1377 Frame_Shift_Ins p.V76Cfs*11 0.24 TCGA-L5-A4OI-01 11 102101396 102101397 - T YAP1 3'UTR 0.40 TCGA-L5-A4OI-01 11 102102562 102102562 T - YAP1 3'UTR 0.31 TCGA-L5-A4OI-01 11 102935036 102935036 G A DCUN1D5 Missense_Mutation p.A209V 0.32 tolerated(0.34) benign(0.026) TCGA-L5-A4OI-01 11 103006263 103006263 T C DYNC2H1 Missense_Mutation p.W749R 0.35 probably_damaging(0.998) TCGA-L5-A4OI-01 11 10328663 10328664 - T ADM 3'UTR 0.39 TCGA-L5-A4OI-01 11 105481571 105481571 T - GRIA4 Intron 0.21 TCGA-L5-A4OI-01 11 105850924 105850924 A G GRIA4 3'UTR 0.38 TCGA-L5-A4OI-01 11 105851169 105851169 T - GRIA4 3'UTR 0.28 TCGA-L5-A4OI-01 11 107200652 107200652 A T CWF19L2 Missense_Mutation p.F845I 0.48 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 11 107299560 107299560 T - CWF19L2 Frame_Shift_Del p.E467Nfs*22 0.33 TCGA-L5-A4OI-01 11 10800749 10800749 T - CTR9 3'UTR 0.39 TCGA-L5-A4OI-01 11 108044069 108044069 T - NPAT Frame_Shift_Del p.S548Vfs*11 0.28 TCGA-L5-A4OI-01 11 108093362 108093362 C T NPAT 5'UTR 0.36 TCGA-L5-A4OI-01 11 1093922 1093922 C T MUC2 Missense_Mutation p.T1914M 0.37 unknown(0) TCGA-L5-A4OI-01 11 110100503 110100503 A G RDX Intron 0.34 TCGA-L5-A4OI-01 11 1102508 1102508 C T MUC2 Missense_Mutation p.T2631M 0.26 unknown(0) TCGA-L5-A4OI-01 11 111779648 111779648 C T CRYAB Missense_Mutation p.R123Q 0.42 deleterious(0.03) possibly_damaging(0.887) TCGA-L5-A4OI-01 11 111959653 111959653 G T SDHD Missense_Mutation p.G78C 0.43 deleterious(0.02) possibly_damaging(0.693) TCGA-L5-A4OI-01 11 112070494 112070494 T C BCO2 Missense_Mutation p.V270A 0.29 deleterious(0.01) probably_damaging(0.957) TCGA-L5-A4OI-01 11 113270316 113270316 C T ANKK1 Missense_Mutation p.A542V 0.29 tolerated(1) benign(0.162) TCGA-L5-A4OI-01 11 117031887 117031887 T C PAFAH1B2 Silent p.L66L 0.34 TCGA-L5-A4OI-01 11 118034454 118034454 C T SCN2B 3'UTR 0.33 TCGA-L5-A4OI-01 11 118406115 118406115 G - TMEM25 3'UTR 0.27 TCGA-L5-A4OI-01 11 118768995 118768995 C A BCL9L 3'UTR 0.33 TCGA-L5-A4OI-01 11 118969143 118969143 A - DPAGT1 Frame_Shift_Del p.F233Sfs*28 0.33 TCGA-L5-A4OI-01 11 119213688 119213688 G - MFRP Frame_Shift_Del p.H384Tfs*94 0.42 TCGA-L5-A4OI-01 11 119549323 119549323 C T PVRL1 Missense_Mutation p.V78M 0.46 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OI-01 11 11969622 11969622 C T USP47 Silent p.S1006S 0.41 TCGA-L5-A4OI-01 11 121030967 121030967 G A TECTA Missense_Mutation p.V1605I 0.42 tolerated(0.62) benign(0.011) TCGA-L5-A4OI-01 11 121323408 121323408 C A SORL1 Intron 0.47 TCGA-L5-A4OI-01 11 121430341 121430341 G A SORL1 Silent p.K1008K 0.46 TCGA-L5-A4OI-01 11 122678802 122678802 C T UBASH3B Missense_Mutation p.A577V 0.47 deleterious(0) possibly_damaging(0.52) TCGA-L5-A4OI-01 11 123599869 123599869 A T ZNF202 Missense_Mutation p.S223T 0.32 tolerated(0.22) benign(0.021) TCGA-L5-A4OI-01 11 124120822 124120822 G A OR8G1 Missense_Mutation p.V134I 0.43 tolerated_low_confidence(0.22) benign(0.031) TCGA-L5-A4OI-01 11 124502084 124502084 C T TBRG1 Nonsense_Mutation p.Q396* 0.33 TCGA-L5-A4OI-01 11 124636528 124636528 A - MSANTD2 3'UTR 0.24 TCGA-L5-A4OI-01 11 124754685 124754685 G A ROBO4 3'UTR 0.33 TCGA-L5-A4OI-01 11 125303090 125303091 AC - PKNOX2 3'UTR 0.36 TCGA-L5-A4OI-01 11 126073407 126073407 C T RPUSD4 Missense_Mutation p.R347H 0.41 tolerated(0.76) benign(0.001) TCGA-L5-A4OI-01 11 126299148 126299148 G A KIRREL3 Nonsense_Mutation p.R578* 0.36 TCGA-L5-A4OI-01 11 1263254 1263254 C A MUC5B Missense_Mutation p.P1715H 0.17 unknown(0) TCGA-L5-A4OI-01 11 1274132 1274132 G A MUC5B Missense_Mutation p.V5047I 0.52 unknown(0) TCGA-L5-A4OI-01 11 130079458 130079458 C T ST14 Silent p.G797G 0.39 TCGA-L5-A4OI-01 11 130281317 130281317 G - ADAMTS8 Frame_Shift_Del p.P582Lfs*61 0.25 TCGA-L5-A4OI-01 11 131240692 131240692 A - NTM 5'UTR 0.51 TCGA-L5-A4OI-01 11 132206462 132206462 A T NTM 3'Flank 0.28 TCGA-L5-A4OI-01 11 133795702 133795702 G A IGSF9B Missense_Mutation p.R656C 0.42 deleterious(0) probably_damaging(0.927) TCGA-L5-A4OI-01 11 134048586 134048586 G - NCAPD3 Frame_Shift_Del p.Q909Rfs*10 0.40 TCGA-L5-A4OI-01 11 13409668 13409668 A - BTBD10 3'UTR 0.25 TCGA-L5-A4OI-01 11 134118196 134118197 - A THYN1 3'UTR 0.31 TCGA-L5-A4OI-01 11 134250378 134250378 G A B3GAT1 3'Flank 0.38 TCGA-L5-A4OI-01 11 14486551 14486551 C T COPB1 Silent p.P772P 0.45 TCGA-L5-A4OI-01 11 1475821 1475821 G A BRSK2 Missense_Mutation p.V597M 0.32 deleterious(0) probably_damaging(0.925) TCGA-L5-A4OI-01 11 16777369 16777369 T - C11orf58 3'UTR 0.35 TCGA-L5-A4OI-01 11 17408357 17408357 G - KCNJ11 3'UTR 0.27 TCGA-L5-A4OI-01 11 17414565 17414565 G A ABCC8 Silent p.F1573F 0.35 TCGA-L5-A4OI-01 11 17741518 17741518 G A MYOD1 Silent p.S63S 0.23 TCGA-L5-A4OI-01 11 18566189 18566189 G A UEVLD Silent p.G347G 0.46 TCGA-L5-A4OI-01 11 18736137 18736137 G A IGSF22 Silent p.D522D 0.46 TCGA-L5-A4OI-01 11 19246039 19246046 TGTGTGTA - E2F8 3'UTR 0.30 TCGA-L5-A4OI-01 11 19735228 19735228 A G NAV2 5'UTR 0.26 TCGA-L5-A4OI-01 11 19735426 19735426 T G NAV2 Missense_Mutation p.V62G 0.46 tolerated_low_confidence(0.32) unknown(0) TCGA-L5-A4OI-01 11 20177882 20177882 G A DBX1 Missense_Mutation p.R343W 0.56 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-L5-A4OI-01 11 20388803 20388803 T C HTATIP2 Silent p.G127G 0.49 TCGA-L5-A4OI-01 11 21392424 21392424 C T NELL1 Silent p.Y525Y 0.31 TCGA-L5-A4OI-01 11 2156651 2156651 C T IGF2 Missense_Mutation p.G91R 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OI-01 11 22400905 22400905 A - SLC17A6 3'UTR 0.59 TCGA-L5-A4OI-01 11 22646528 22646528 G A FANCF Silent p.L277L 0.41 TCGA-L5-A4OI-01 11 22834526 22834526 A C GAS2 3'UTR 0.32 TCGA-L5-A4OI-01 11 25103831 25103832 - T LUZP2 3'Flank 0.21 TCGA-L5-A4OI-01 11 28318379 28318379 G A METTL15 Missense_Mutation p.G227R 0.33 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 11 2904955 2904955 C T CDKN1C 3'UTR 0.35 TCGA-L5-A4OI-01 11 30433064 30433064 G A MPPED2 Missense_Mutation p.P279L 0.07 tolerated(0.16) probably_damaging(0.987) TCGA-L5-A4OI-01 11 3069086 3069086 C T CARS Silent p.P57P 0.39 TCGA-L5-A4OI-01 11 32126251 32126251 T G RCN1 3'UTR 0.32 TCGA-L5-A4OI-01 11 35641844 35641844 G C FJX1 3'UTR 0.45 TCGA-L5-A4OI-01 11 36293077 36293077 C T COMMD9 3'Flank 0.41 TCGA-L5-A4OI-01 11 380921 380921 G - B4GALNT4 Frame_Shift_Del p.G991Vfs*71 0.39 TCGA-L5-A4OI-01 11 428562 428562 G A ANO9 Silent p.A366A 0.31 TCGA-L5-A4OI-01 11 43364739 43364740 - AT API5 3'Flank 0.19 TCGA-L5-A4OI-01 11 44286624 44286624 G - ALX4 Frame_Shift_Del p.P339Lfs*12 0.31 TCGA-L5-A4OI-01 11 47310955 47310955 G A MADD Silent p.A909A 0.38 TCGA-L5-A4OI-01 11 4928790 4928790 C T OR51A7 Missense_Mutation p.A64V 0.39 deleterious(0.01) benign(0.41) TCGA-L5-A4OI-01 11 4936759 4936759 C T OR51G2 Silent p.P45P 0.38 TCGA-L5-A4OI-01 11 4944874 4944874 G A OR51G1 Silent p.S232S 0.38 TCGA-L5-A4OI-01 11 55406142 55406142 T - OR4P4 Frame_Shift_Del p.F105Lfs*4 0.50 TCGA-L5-A4OI-01 11 55563149 55563149 A G OR5D14 Missense_Mutation p.T40A 0.30 deleterious(0.02) benign(0.126) TCGA-L5-A4OI-01 11 55653610 55653610 A - TRIM51 Frame_Shift_Del p.M144Cfs*15 0.41 TCGA-L5-A4OI-01 11 55735743 55735743 G T OR10AG1 Missense_Mutation p.T66K 0.38 deleterious(0) benign(0.419) TCGA-L5-A4OI-01 11 56431959 56431959 C T OR5AR1 Silent p.Y266Y 0.38 TCGA-L5-A4OI-01 11 57428888 57428888 C T CLP1 Missense_Mutation p.R420W 0.43 deleterious(0.01) probably_damaging(0.97) TCGA-L5-A4OI-01 11 57512575 57512581 TCCGGGA - BTBD18 Frame_Shift_Del p.D388Efs*53 0.42 TCGA-L5-A4OI-01 11 58207226 58207226 G T OR5B12 Silent p.T133T 0.32 TCGA-L5-A4OI-01 11 58386428 58386428 T - ZFP91 3'UTR 0.45 TCGA-L5-A4OI-01 11 58892343 58892343 A G FAM111B Missense_Mutation p.E258G 0.35 deleterious(0.04) benign(0.15) TCGA-L5-A4OI-01 11 58894160 58894160 A - FAM111B 3'UTR 0.27 TCGA-L5-A4OI-01 11 60704054 60704054 C T TMEM132A Missense_Mutation p.P917L 0.25 tolerated(0.48) benign(0.004) TCGA-L5-A4OI-01 11 61285739 61285739 G T SYT7 3'UTR 0.41 TCGA-L5-A4OI-01 11 61309776 61309776 C T SYT7 Intron 0.51 TCGA-L5-A4OI-01 11 61539013 61539013 C - MYRF Frame_Shift_Del p.S264Afs*8 0.50 TCGA-L5-A4OI-01 11 61897744 61897744 G A INCENP Missense_Mutation p.G249R 0.39 tolerated(0.13) unknown(0) TCGA-L5-A4OI-01 11 62434855 62434855 C T METTL12 3'UTR 0.50 TCGA-L5-A4OI-01 11 62521141 62521141 C T ZBTB3 Missense_Mutation p.G49D 0.42 tolerated_low_confidence(0.57) benign(0.002) TCGA-L5-A4OI-01 11 63365556 63365556 T C PLA2G16 Missense_Mutation p.Y32C 0.37 deleterious(0.03) benign(0.366) TCGA-L5-A4OI-01 11 6340635 6340635 C T PRKCDBP Missense_Mutation p.G182R 0.55 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 11 63665754 63665754 T C MARK2 Splice_Site p.X113_splice 0.42 TCGA-L5-A4OI-01 11 64005892 64005892 C T VEGFB 3'UTR 0.44 TCGA-L5-A4OI-01 11 64022235 64022235 G A PLCB3 Missense_Mutation p.D65N 0.31 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OI-01 11 64031214 64031214 C T PLCB3 Missense_Mutation p.P836L 0.32 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OI-01 11 6422905 6422905 C T APBB1 Missense_Mutation p.V466I 0.44 deleterious(0.02) benign(0.005) TCGA-L5-A4OI-01 11 64453270 64453270 C T NRXN2 Missense_Mutation p.A334T 0.40 tolerated(0.13) benign(0.005) TCGA-L5-A4OI-01 11 64525786 64525786 C T PYGM Missense_Mutation p.A154T 0.31 deleterious(0.02) benign(0.138) TCGA-L5-A4OI-01 11 65315233 65315233 C T LTBP3 Missense_Mutation p.G636S 0.33 tolerated(0.34) possibly_damaging(0.801) TCGA-L5-A4OI-01 11 65403715 65403715 G A PCNXL3 Missense_Mutation p.G1844S 0.40 deleterious(0.04) benign(0.001) TCGA-L5-A4OI-01 11 65618607 65618607 G A SNX32 Missense_Mutation p.D229N 0.32 tolerated(0.06) benign(0.012) TCGA-L5-A4OI-01 11 65622513 65622513 A - CFL1 3'UTR 0.33 TCGA-L5-A4OI-01 11 65793344 65793344 G A CATSPER1 Silent p.H169H 0.38 TCGA-L5-A4OI-01 11 65810450 65810450 C T GAL3ST3 Missense_Mutation p.R275H 0.40 tolerated(0.11) possibly_damaging(0.841) TCGA-L5-A4OI-01 11 66033656 66033656 G - KLC2 Frame_Shift_Del p.G567Afs*11 0.27 TCGA-L5-A4OI-01 11 66039143 66039143 A - RAB1B Intron 0.80 TCGA-L5-A4OI-01 11 6629392 6629392 C - ILK Frame_Shift_Del p.L71Cfs*26 0.35 TCGA-L5-A4OI-01 11 66458942 66458942 C T SPTBN2 Missense_Mutation p.R1793Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 11 66466466 66466466 G A SPTBN2 Silent p.H1288H 0.41 TCGA-L5-A4OI-01 11 66616042 66616042 A G PC 3'UTR 0.53 TCGA-L5-A4OI-01 11 67051342 67051342 C - ADRBK1 Frame_Shift_Del p.P473Hfs*5 0.38 TCGA-L5-A4OI-01 11 67185908 67185908 C A CARNS1 Missense_Mutation p.P94H 0.39 deleterious(0.01) probably_damaging(0.975) TCGA-L5-A4OI-01 11 68772931 68772931 T C MRGPRF Missense_Mutation p.N283D 0.55 tolerated(0.11) possibly_damaging(0.901) TCGA-L5-A4OI-01 11 69631126 69631126 A G FGF3 Missense_Mutation p.Y96H 0.44 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 11 70009451 70009451 C T ANO1 Intron 0.41 TCGA-L5-A4OI-01 11 71730662 71730662 A G NUMA1 Silent p.A154A 0.39 TCGA-L5-A4OI-01 11 72537864 72537864 C A ATG16L2 Silent p.A454A 0.26 TCGA-L5-A4OI-01 11 73712474 73712474 G A UCP3 Missense_Mutation p.R308W 0.40 tolerated_low_confidence(0.23) benign(0) TCGA-L5-A4OI-01 11 73804962 73804963 GA - C2CD3 Frame_Shift_Del p.L1081Pfs*5 0.30 TCGA-L5-A4OI-01 11 76508758 76508758 G A TSKU 3'UTR 0.47 TCGA-L5-A4OI-01 11 76901075 76901075 A T MYO7A Missense_Mutation p.N1214I 0.29 deleterious(0.01) possibly_damaging(0.662) TCGA-L5-A4OI-01 11 78369190 78369190 G A TENM4 Silent p.F2741F 0.56 TCGA-L5-A4OI-01 11 78443446 78443446 C T TENM4 Missense_Mutation p.R1018H 0.31 tolerated(0.07) probably_damaging(0.974) TCGA-L5-A4OI-01 11 78600941 78600941 G A TENM4 Missense_Mutation p.R325W 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OI-01 11 788130 788130 T - CEND1 Frame_Shift_Del p.K149Nfs*59 0.48 TCGA-L5-A4OI-01 11 8161539 8161539 A - RIC3 Frame_Shift_Del p.L109Yfs*46 0.26 TCGA-L5-A4OI-01 11 82966931 82966932 AA - CCDC90B 3'Flank 0.42 TCGA-L5-A4OI-01 11 85372371 85372371 A - CREBZF 3'UTR 0.68 TCGA-L5-A4OI-01 11 893458 893458 G T CHID1 Missense_Mutation p.L249I 0.42 tolerated(1) benign(0.001) TCGA-L5-A4OI-01 11 9069061 9069061 C T SCUBE2 Missense_Mutation p.R615H 0.40 deleterious(0) probably_damaging(0.969) TCGA-L5-A4OI-01 11 92534013 92534013 G T FAT3 Missense_Mutation p.D2612Y 0.48 probably_damaging(0.986) TCGA-L5-A4OI-01 11 92534496 92534496 C T FAT3 Missense_Mutation p.R2773C 0.36 possibly_damaging(0.453) TCGA-L5-A4OI-01 11 92577336 92577336 C T FAT3 Silent p.H3601H 0.47 TCGA-L5-A4OI-01 11 92600024 92600024 C T FAT3 Missense_Mutation p.R3926C 0.44 possibly_damaging(0.893) TCGA-L5-A4OI-01 11 92715303 92715303 C T MTNR1B Missense_Mutation p.A305V 0.36 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A4OI-01 11 93433117 93433117 C - KIAA1731 Frame_Shift_Del p.P1682Qfs*5 0.31 TCGA-L5-A4OI-01 11 93469181 93469181 G T TAF1D 3'UTR 0.53 TCGA-L5-A4OI-01 11 93844770 93844770 C T HEPHL1 Silent p.N1092N 0.59 TCGA-L5-A4OI-01 11 94134356 94134356 G T GPR83 Missense_Mutation p.H20N 0.45 tolerated_low_confidence(0.3) benign(0.003) TCGA-L5-A4OI-01 11 94279551 94279551 G A FUT4 3'UTR 0.41 TCGA-L5-A4OI-01 11 94602625 94602625 C T AMOTL1 Silent p.T917T 0.62 TCGA-L5-A4OI-01 11 95504680 95504680 C - FAM76B 3'UTR 0.32 TCGA-L5-A4OI-01 11 95568534 95568535 TC - MTMR2 Frame_Shift_Del p.E617Dfs*3 0.21 TCGA-L5-A4OI-01 11 96126569 96126569 T - JRKL 3'UTR 0.36 TCGA-L5-A4OI-01 11 9917553 9917553 A G SBF2 Silent p.C622C 0.22 TCGA-L5-A4OI-01 11 99827718 99827718 C T CNTN5 Missense_Mutation p.T285M 0.48 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 12 100598718 100598718 G A ACTR6 Silent p.S23S 0.38 TCGA-L5-A4OI-01 12 101603614 101603614 G A SLC5A8 Missense_Mutation p.R5W 0.53 deleterious(0.01) possibly_damaging(0.634) TCGA-L5-A4OI-01 12 101680157 101680157 T - UTP20 Frame_Shift_Del p.L131* 0.31 TCGA-L5-A4OI-01 12 104048365 104048366 - A STAB2 Frame_Shift_Ins p.K483Efs*20 0.31 TCGA-L5-A4OI-01 12 104378572 104378572 C T TDG Missense_Mutation p.P280S 0.37 deleterious(0) benign(0.09) TCGA-L5-A4OI-01 12 10466007 10466007 A G KLRD1 Splice_Site p.X106_splice 0.30 TCGA-L5-A4OI-01 12 105198777 105198777 A - SLC41A2 3'UTR 0.40 TCGA-L5-A4OI-01 12 105464438 105464438 G A ALDH1L2 Missense_Mutation p.P113L 0.38 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-L5-A4OI-01 12 105589058 105589059 - T APPL2 Frame_Shift_Ins p.Q414Tfs*18 0.31 TCGA-L5-A4OI-01 12 105600899 105600899 C T APPL2 Silent p.A193A 0.19 TCGA-L5-A4OI-01 12 106826212 106826213 - G POLR3B Frame_Shift_Ins p.E529Gfs*14 0.26 TCGA-L5-A4OI-01 12 107281129 107281129 T - RIC8B 3'Flank 0.30 TCGA-L5-A4OI-01 12 108052351 108052351 C T BTBD11 3'UTR 0.45 TCGA-L5-A4OI-01 12 108985490 108985490 C T TMEM119 Missense_Mutation p.V224I 0.38 tolerated(0.18) benign(0.16) TCGA-L5-A4OI-01 12 110019240 110019240 C - MVK Frame_Shift_Del p.A141Rfs*18 0.37 TCGA-L5-A4OI-01 12 110784514 110784514 T - ATP2A2 3'UTR 0.54 TCGA-L5-A4OI-01 12 110820645 110820645 T C ANAPC7 Intron 0.38 TCGA-L5-A4OI-01 12 111099112 111099112 C G HVCN1 Missense_Mutation p.E55Q 0.32 tolerated(0.17) benign(0.009) TCGA-L5-A4OI-01 12 111321964 111321964 C T CCDC63 Silent p.A328A 0.41 TCGA-L5-A4OI-01 12 111749924 111749924 C T CUX2 Missense_Mutation p.R641C 0.30 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OI-01 12 111926574 111926574 C G ATXN2 Missense_Mutation p.S809T 0.40 probably_damaging(0.993) TCGA-L5-A4OI-01 12 11244841 11244841 A - TAS2R43 5'UTR 0.19 TCGA-L5-A4OI-01 12 112450930 112450930 G A TMEM116 5'Flank 0.52 TCGA-L5-A4OI-01 12 112457621 112457623 AGC - ERP29 In_Frame_Del p.Q70del 0.56 TCGA-L5-A4OI-01 12 112486138 112486138 C T NAA25 Missense_Mutation p.R613H 0.48 tolerated(0.05) possibly_damaging(0.512) TCGA-L5-A4OI-01 12 113319586 113319586 C T RPH3A Missense_Mutation p.P421S 0.47 deleterious(0.01) probably_damaging(0.986) TCGA-L5-A4OI-01 12 113442830 113442830 A - OAS2 Frame_Shift_Del p.N426Tfs*14 0.29 TCGA-L5-A4OI-01 12 113706674 113706674 G A TPCN1 Missense_Mutation p.R291Q 0.26 deleterious(0) benign(0.241) TCGA-L5-A4OI-01 12 114793595 114793595 C - TBX5 Frame_Shift_Del p.L435Wfs*147 0.34 TCGA-L5-A4OI-01 12 116397557 116397557 T - MED13L 3'UTR 0.43 TCGA-L5-A4OI-01 12 116412999 116412999 C T MED13L Missense_Mutation p.R1903H 0.53 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 12 118517261 118517261 A C VSIG10 Missense_Mutation p.L272R 0.11 deleterious(0.03) benign(0.439) TCGA-L5-A4OI-01 12 120428062 120428062 G A CCDC64 Silent p.Q130Q 0.40 TCGA-L5-A4OI-01 12 121442025 121442025 C A C12orf43 Missense_Mutation p.K240N 0.31 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OI-01 12 121712281 121712281 G - CAMKK2 Frame_Shift_Del p.Q17Rfs*27 0.34 TCGA-L5-A4OI-01 12 122405917 122405917 A T WDR66 Silent p.G871G 0.23 TCGA-L5-A4OI-01 12 122620180 122620180 G - MLXIP Frame_Shift_Del p.G668Afs*50 0.38 TCGA-L5-A4OI-01 12 12273825 12273825 T - LRP6 3'UTR 0.57 TCGA-L5-A4OI-01 12 123706322 123706322 A - MPHOSPH9 Frame_Shift_Del p.S5Lfs*2 0.30 TCGA-L5-A4OI-01 12 123892040 123892040 C T SETD8 Silent p.C283C 0.48 TCGA-L5-A4OI-01 12 123950525 123950525 A - SNRNP35 Frame_Shift_Del p.K153Rfs*6 0.29 TCGA-L5-A4OI-01 12 124232214 124232214 G A ATP6V0A2 Missense_Mutation p.V556M 0.45 deleterious(0) probably_damaging(0.957) TCGA-L5-A4OI-01 12 124298415 124298415 G T DNAH10 Missense_Mutation p.D1128Y 0.16 possibly_damaging(0.75) TCGA-L5-A4OI-01 12 124335572 124335572 G A DNAH10 Silent p.L1962L 0.36 TCGA-L5-A4OI-01 12 124498832 124498832 G T ZNF664 3'UTR 0.54 TCGA-L5-A4OI-01 12 124846745 124846745 G A NCOR2 Silent p.S1009S 0.30 TCGA-L5-A4OI-01 12 125438447 125438447 G A DHX37 Missense_Mutation p.R892W 0.47 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 12 125613986 125613986 C T AACS Missense_Mutation p.A510V 0.27 deleterious(0) probably_damaging(0.941) TCGA-L5-A4OI-01 12 125626670 125626670 C T AACS Silent p.A638A 0.34 TCGA-L5-A4OI-01 12 126138151 126138151 C T TMEM132B Missense_Mutation p.S711L 0.37 deleterious(0.02) possibly_damaging(0.642) TCGA-L5-A4OI-01 12 128899735 128899735 C T TMEM132C Missense_Mutation p.R182W 0.47 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OI-01 12 130647719 130647719 G A FZD10 Missense_Mutation p.G78S 0.61 deleterious(0.02) probably_damaging(1) TCGA-L5-A4OI-01 12 130892306 130892306 C T RIMBP2 Missense_Mutation p.D964N 0.45 tolerated(0.58) possibly_damaging(0.68) TCGA-L5-A4OI-01 12 131283099 131283100 - T STX2 Frame_Shift_Ins p.A253Sfs*111 0.31 TCGA-L5-A4OI-01 12 131357570 131357570 T C RAN Silent p.H48H 0.38 TCGA-L5-A4OI-01 12 131357571 131357571 C A RAN Missense_Mutation p.P49T 0.40 tolerated(0.11) benign(0.063) TCGA-L5-A4OI-01 12 13221246 13221246 T C KIAA1467 Missense_Mutation p.V384A 0.15 tolerated(0.1) probably_damaging(0.997) TCGA-L5-A4OI-01 12 133220544 133220544 C T POLE Missense_Mutation p.R1390H 0.41 deleterious(0.02) benign(0.337) TCGA-L5-A4OI-01 12 133349866 133349866 C T GOLGA3 Missense_Mutation p.S1441N 0.56 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A4OI-01 12 133417126 133417127 - T CHFR 3'Flank 0.24 TCGA-L5-A4OI-01 12 14019063 14019063 C T GRIN2B Missense_Mutation p.R27H 0.79 tolerated(0.25) benign(0) TCGA-L5-A4OI-01 12 14649259 14649261 ACC - ATF7IP In_Frame_Del p.P1127del 0.33 TCGA-L5-A4OI-01 12 14832637 14832637 G A GUCY2C Nonsense_Mutation p.R262* 0.24 TCGA-L5-A4OI-01 12 14939829 14939829 T - WBP11 3'UTR 0.17 TCGA-L5-A4OI-01 12 1755422 1755422 G A WNT5B 3'UTR 0.19 TCGA-L5-A4OI-01 12 19501363 19501363 C T PLEKHA5 Missense_Mutation p.P977S 0.73 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A4OI-01 12 2019083 2019083 C A CACNA2D4 Nonsense_Mutation p.E159* 0.13 TCGA-L5-A4OI-01 12 21422458 21422459 - A SLCO1A2 3'UTR 0.45 TCGA-L5-A4OI-01 12 24736735 24736735 A - LINC00477 RNA 0.82 TCGA-L5-A4OI-01 12 27118595 27118595 A - FGFR1OP2 3'UTR 0.63 TCGA-L5-A4OI-01 12 28122681 28122681 A - PTHLH Intron 0.18 TCGA-L5-A4OI-01 12 333174 333174 A G SLC6A13 Missense_Mutation p.L432P 0.24 deleterious(0) probably_damaging(0.967) TCGA-L5-A4OI-01 12 39079292 39079292 C T CPNE8 Missense_Mutation p.R424K 0.42 tolerated(0.2) possibly_damaging(0.872) TCGA-L5-A4OI-01 12 392715 392715 T - KDM5A 3'UTR 0.21 TCGA-L5-A4OI-01 12 393296 393296 T - KDM5A 3'UTR 0.77 TCGA-L5-A4OI-01 12 39726722 39726722 A G KIF21A Missense_Mutation p.L892S 0.33 tolerated(0.83) benign(0.01) TCGA-L5-A4OI-01 12 40702287 40702287 A - LRRK2 Frame_Shift_Del p.K1328Rfs*8 0.26 TCGA-L5-A4OI-01 12 42499672 42499672 T C GXYLT1 Missense_Mutation p.N271S 0.32 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 12 4411324 4411324 C T CCND2 3'UTR 0.28 TCGA-L5-A4OI-01 12 46321475 46321475 T - SCAF11 Frame_Shift_Del p.N670Ifs*4 0.32 TCGA-L5-A4OI-01 12 48458896 48458897 TT - SENP1 Frame_Shift_Del p.K409Rfs*3 0.31 TCGA-L5-A4OI-01 12 48723224 48723224 G A H1FNT Silent p.S50S 0.50 TCGA-L5-A4OI-01 12 49075916 49075916 G A KANSL2 Intron 0.25 TCGA-L5-A4OI-01 12 4919978 4919978 C A KCNA6 Silent p.S257S 0.19 TCGA-L5-A4OI-01 12 49412241 49412241 G A PRKAG1 Intron 0.32 TCGA-L5-A4OI-01 12 49412461 49412461 G - PRKAG1 Intron 0.37 TCGA-L5-A4OI-01 12 49413199 49413199 A - KMT2D 3'UTR 0.48 TCGA-L5-A4OI-01 12 49943310 49943310 C T KCNH3 Missense_Mutation p.R519C 0.44 deleterious(0) probably_damaging(0.943) TCGA-L5-A4OI-01 12 5024827 5024827 A - KCNA1 3'UTR 0.19 TCGA-L5-A4OI-01 12 50384039 50384039 G A RACGAP1 3'UTR 0.26 TCGA-L5-A4OI-01 12 50870805 50870805 T A LARP4 3'UTR 0.20 TCGA-L5-A4OI-01 12 50873606 50873606 T G LARP4 3'UTR 0.45 TCGA-L5-A4OI-01 12 51390736 51390736 C T SLC11A2 Missense_Mutation p.S261N 0.37 tolerated(0.71) benign(0.002) TCGA-L5-A4OI-01 12 51445997 51445997 G A LETMD1 Missense_Mutation p.A133T 0.40 tolerated_low_confidence(0.34) benign(0.003) TCGA-L5-A4OI-01 12 521005 521005 C - CCDC77 Frame_Shift_Del p.E46Kfs*32 0.42 TCGA-L5-A4OI-01 12 52156424 52156424 C T SCN8A Silent p.D836D 0.49 TCGA-L5-A4OI-01 12 52204038 52204039 - A AC068987.1 Frame_Shift_Ins p.C31Mfs*33 0.42 TCGA-L5-A4OI-01 12 52374794 52374794 G A ACVR1B Missense_Mutation p.V208I 0.33 tolerated(0.26) probably_damaging(0.997) TCGA-L5-A4OI-01 12 52841135 52841135 C A KRT6B Nonsense_Mutation p.G512* 0.08 TCGA-L5-A4OI-01 12 53400176 53400178 CTC TT EIF4B 5'UTR 0.32 TCGA-L5-A4OI-01 12 53447261 53447261 A G TENC1 Intron 0.38 TCGA-L5-A4OI-01 12 53777115 53777115 G A SP1 Missense_Mutation p.V462I 0.33 tolerated(0.99) benign(0.417) TCGA-L5-A4OI-01 12 53825226 53825226 C A AMHR2 Missense_Mutation p.P564H 0.29 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-L5-A4OI-01 12 54402987 54402987 G - HOXC8 5'UTR 0.35 TCGA-L5-A4OI-01 12 54474095 54474095 C T RP11-834C11.3 Intron 0.42 TCGA-L5-A4OI-01 12 54757475 54757475 C T GPR84 Missense_Mutation p.R54Q 0.39 deleterious(0.04) possibly_damaging(0.869) TCGA-L5-A4OI-01 12 54757554 54757554 C - GPR84 Frame_Shift_Del p.V28Wfs*5 0.35 TCGA-L5-A4OI-01 12 55820521 55820521 C T OR6C76 Nonsense_Mutation p.Q162* 0.46 TCGA-L5-A4OI-01 12 55863619 55863619 A - OR6C70 Frame_Shift_Del p.Y102Tfs*12 0.33 TCGA-L5-A4OI-01 12 56078367 56078367 T - ITGA7 3'UTR 0.64 TCGA-L5-A4OI-01 12 56295419 56295419 A G WIBG 3'UTR 0.12 TCGA-L5-A4OI-01 12 56388334 56388334 T - RAB5B 3'UTR 0.44 TCGA-L5-A4OI-01 12 56495024 56495024 C T ERBB3 Silent p.R1127R 0.50 TCGA-L5-A4OI-01 12 56505296 56505296 A - PA2G4 Frame_Shift_Del p.K369Rfs*19 0.30 TCGA-L5-A4OI-01 12 56720180 56720180 C T PAN2 Missense_Mutation p.V426M 0.38 deleterious(0) probably_damaging(0.939) TCGA-L5-A4OI-01 12 5687598 5687598 G T ANO2 Silent p.R774R 0.61 TCGA-L5-A4OI-01 12 56992712 56992712 C T BAZ2A Missense_Mutation p.R1831Q 0.50 deleterious(0) probably_damaging(0.974) TCGA-L5-A4OI-01 12 56995512 56995512 G T BAZ2A Missense_Mutation p.P1299T 0.56 tolerated(0.21) benign(0.146) TCGA-L5-A4OI-01 12 57000030 57000030 C T BAZ2A Splice_Site p.X755_splice 0.31 TCGA-L5-A4OI-01 12 57605984 57605984 C T LRP1 Silent p.G4478G 0.38 TCGA-L5-A4OI-01 12 57704152 57704152 T - R3HDM2 Frame_Shift_Del p.K20Nfs*7 0.44 TCGA-L5-A4OI-01 12 57894297 57894297 G A MARS Missense_Mutation p.E429K 0.35 deleterious(0) probably_damaging(0.928) TCGA-L5-A4OI-01 12 58025802 58025802 C T B4GALNT1 Silent p.A38A 0.43 TCGA-L5-A4OI-01 12 6347089 6347089 T - CD9 3'UTR 0.52 TCGA-L5-A4OI-01 12 64062105 64062105 G A DPY19L2 Silent p.R23R 0.55 TCGA-L5-A4OI-01 12 64587767 64587767 G A C12orf66 Missense_Mutation p.P398L 0.45 tolerated(0.31) benign(0.121) TCGA-L5-A4OI-01 12 65641499 65641499 C T LEMD3 3'UTR 0.24 TCGA-L5-A4OI-01 12 6573410 6573410 G A VAMP1 3'UTR 0.20 TCGA-L5-A4OI-01 12 6630171 6630171 C T NCAPD2 Nonsense_Mutation p.R537* 0.25 TCGA-L5-A4OI-01 12 66731962 66731962 A - HELB 3'UTR 0.60 TCGA-L5-A4OI-01 12 6729168 6729168 G A LPAR5 3'UTR 0.20 TCGA-L5-A4OI-01 12 675233 675233 G A NINJ2 Missense_Mutation p.R95W 0.16 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OI-01 12 69145920 69145920 C T SLC35E3 Missense_Mutation p.P208S 0.32 deleterious(0.01) benign(0.374) TCGA-L5-A4OI-01 12 69650552 69650552 T A CPSF6 Missense_Mutation p.H150Q 0.51 deleterious(0.01) unknown(0) TCGA-L5-A4OI-01 12 70049362 70049362 G - BEST3 Frame_Shift_Del p.R445Gfs*40 0.35 TCGA-L5-A4OI-01 12 7069948 7069948 C - PTPN6 Frame_Shift_Del p.L601Cfs*12 0.41 TCGA-L5-A4OI-01 12 7085886 7085886 A - LPCAT3 3'UTR 0.78 TCGA-L5-A4OI-01 12 7310095 7310095 C T CLSTN3 Silent p.S846S 0.24 TCGA-L5-A4OI-01 12 76441737 76441737 T - NAP1L1 3'UTR 0.30 TCGA-L5-A4OI-01 12 76741019 76741019 C T BBS10 Missense_Mutation p.R249H 0.36 deleterious(0) possibly_damaging(0.601) TCGA-L5-A4OI-01 12 772503 772503 G A NINJ2 Silent p.I54I 0.23 TCGA-L5-A4OI-01 12 8549046 8549046 G A LINC00937 RNA 0.83 TCGA-L5-A4OI-01 12 8549081 8549081 C G LINC00937 RNA 0.05 TCGA-L5-A4OI-01 12 8757842 8757842 G A AICDA Silent p.A132A 0.36 TCGA-L5-A4OI-01 12 88591282 88591282 A T TMTC3 3'UTR 0.43 TCGA-L5-A4OI-01 12 88900860 88900860 A G KITLG Missense_Mutation p.L220S 0.32 deleterious(0) probably_damaging(0.976) TCGA-L5-A4OI-01 12 89742558 89742558 T - DUSP6 3'UTR 0.34 TCGA-L5-A4OI-01 12 91348110 91348110 G - CCER1 Frame_Shift_Del p.P137Qfs*30 0.37 TCGA-L5-A4OI-01 12 92537187 92537187 G A BTG1 3'UTR 0.43 TCGA-L5-A4OI-01 12 95911790 95911790 A - USP44 3'UTR 0.54 TCGA-L5-A4OI-01 12 96912781 96912781 T C C12orf55 Missense_Mutation p.W292R 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 12 97024359 97024359 A - C12orf55 Frame_Shift_Del p.K1418Rfs*4 0.33 TCGA-L5-A4OI-01 12 9727638 9727638 G A RP11-726G1.1 RNA 0.10 TCGA-L5-A4OI-01 12 98921672 98921672 A - TMPO Frame_Shift_Del p.T99Lfs*12 0.43 TCGA-L5-A4OI-01 12 98927535 98927535 A T TMPO Missense_Mutation p.K500N 0.46 tolerated_low_confidence(0.11) probably_damaging(0.996) TCGA-L5-A4OI-01 12 98995518 98995518 A T SLC25A3 3'UTR 0.57 TCGA-L5-A4OI-01 12 99109237 99109237 G A APAF1 Silent p.Q997Q 0.29 TCGA-L5-A4OI-01 12 99128498 99128498 G A APAF1 3'Flank 0.32 TCGA-L5-A4OI-01 13 100181733 100181735 AAG - TM9SF2 In_Frame_Del p.K117del 0.29 TCGA-L5-A4OI-01 13 100622616 100622616 C T ZIC5 Missense_Mutation p.M438I 0.26 deleterious(0.04) benign(0.106) TCGA-L5-A4OI-01 13 101742266 101742266 C T NALCN Silent p.A1107A 0.24 TCGA-L5-A4OI-01 13 101763504 101763504 C T NALCN Missense_Mutation p.V756M 0.17 tolerated(0.12) benign(0.09) TCGA-L5-A4OI-01 13 103459968 103459968 G A BIVM-ERCC5 Silent p.S89S 0.14 TCGA-L5-A4OI-01 13 108884458 108884458 A - ABHD13 3'UTR 0.80 TCGA-L5-A4OI-01 13 109792622 109792622 G A MYO16 Silent p.R1332R 0.31 TCGA-L5-A4OI-01 13 110435020 110435020 C T IRS2 Silent p.P1127P 0.25 TCGA-L5-A4OI-01 13 110436713 110436713 G A IRS2 Missense_Mutation p.A563V 0.33 tolerated(0.26) benign(0.002) TCGA-L5-A4OI-01 13 111164699 111164699 G A COL4A2 3'UTR 0.60 TCGA-L5-A4OI-01 13 111277612 111277612 G A CARKD Missense_Mutation p.V125I 0.61 deleterious(0.02) probably_damaging(0.923) TCGA-L5-A4OI-01 13 114438248 114438248 G A GRK1 Missense_Mutation p.R535H 0.60 tolerated(0.09) benign(0.004) TCGA-L5-A4OI-01 13 20567457 20567457 T C ZMYM2 Missense_Mutation p.I82T 0.06 tolerated_low_confidence(0.45) benign(0.001) TCGA-L5-A4OI-01 13 20610980 20610980 A G ZMYM2 Silent p.E741E 0.51 TCGA-L5-A4OI-01 13 20641084 20641084 G A ZMYM2 Missense_Mutation p.V1076I 0.28 tolerated(0.18) benign(0.014) TCGA-L5-A4OI-01 13 20716933 20716933 G A GJA3 Silent p.A165A 0.51 TCGA-L5-A4OI-01 13 21353627 21353627 A - XPO4 3'UTR 0.47 TCGA-L5-A4OI-01 13 23903353 23903353 A - SACS 3'UTR 0.22 TCGA-L5-A4OI-01 13 23910851 23910851 G T SACS Silent p.T2388T 0.36 TCGA-L5-A4OI-01 13 24515468 24515468 T - ANKRD20A19P RNA 0.33 TCGA-L5-A4OI-01 13 24876772 24876772 G A SPATA13 Missense_Mutation p.G1232D 0.31 tolerated(0.14) benign(0.009) TCGA-L5-A4OI-01 13 25285483 25285483 G A ATP12A Silent p.P1015P 0.53 TCGA-L5-A4OI-01 13 25671275 25671275 G A PABPC3 Silent p.A313A 0.20 TCGA-L5-A4OI-01 13 27259944 27259944 G A WASF3 Missense_Mutation p.D491N 0.31 deleterious(0) unknown(0) TCGA-L5-A4OI-01 13 28519601 28519601 A G ATP5EP2 3'UTR 0.10 TCGA-L5-A4OI-01 13 28519639 28519639 T C ATP5EP2 3'UTR 0.14 TCGA-L5-A4OI-01 13 28539139 28539139 C T CDX2 Silent p.T185T 0.49 TCGA-L5-A4OI-01 13 28893668 28893668 G A FLT1 Nonsense_Mutation p.R1060* 0.19 TCGA-L5-A4OI-01 13 29275067 29275067 C T SLC46A3 3'UTR 0.61 TCGA-L5-A4OI-01 13 30340105 30340105 G A UBL3 3'UTR 0.33 TCGA-L5-A4OI-01 13 31035515 31035515 T A HMGB1 Missense_Mutation p.E209D 0.19 tolerated_low_confidence(0.49) unknown(0) TCGA-L5-A4OI-01 13 32899266 32899266 A G BRCA2 Missense_Mutation p.M124V 0.58 tolerated(1) benign(0.004) TCGA-L5-A4OI-01 13 33679026 33679026 C - STARD13 3'UTR 0.42 TCGA-L5-A4OI-01 13 34098474 34098475 - T RP11-141M1.3 RNA 0.29 TCGA-L5-A4OI-01 13 36026232 36026232 C T NBEA Missense_Mutation p.T2103M 0.61 tolerated(0.11) benign(0.411) TCGA-L5-A4OI-01 13 36857616 36857616 C T CCDC169 Missense_Mutation p.R102Q 0.12 tolerated(0.78) benign(0.006) TCGA-L5-A4OI-01 13 37569592 37569592 C T ALG5 Missense_Mutation p.V70I 0.31 tolerated(1) benign(0.059) TCGA-L5-A4OI-01 13 38137448 38137448 T - POSTN 3'UTR 0.26 TCGA-L5-A4OI-01 13 38164539 38164539 C T POSTN Silent p.P137P 0.21 TCGA-L5-A4OI-01 13 39432168 39432168 A C FREM2 Missense_Mutation p.T2405P 0.24 deleterious(0) benign(0.307) TCGA-L5-A4OI-01 13 39586344 39586344 C A PROSER1 Missense_Mutation p.G863V 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 13 39622977 39622977 T - NHLRC3 3'UTR 0.43 TCGA-L5-A4OI-01 13 42897191 42897192 - T AKAP11 3'UTR 0.18 TCGA-L5-A4OI-01 13 43181964 43181964 G T TNFSF11 3'UTR 0.24 TCGA-L5-A4OI-01 13 45602078 45602078 A - GPALPP1 Frame_Shift_Del p.K323Nfs*5 0.11 TCGA-L5-A4OI-01 13 45914388 45914388 G A TPT1 Intron 0.29 TCGA-L5-A4OI-01 13 46425732 46425732 T C SIAH3 Silent p.V11V 0.27 TCGA-L5-A4OI-01 13 46656606 46656606 C T CPB2 Silent p.S118S 0.51 TCGA-L5-A4OI-01 13 46946506 46946506 A G KIAA0226L Silent p.T35T 0.28 TCGA-L5-A4OI-01 13 47316064 47316064 G A LRCH1 3'UTR 0.82 TCGA-L5-A4OI-01 13 48916753 48916753 A - RB1 Frame_Shift_Del p.K96Rfs*15 0.38 TCGA-L5-A4OI-01 13 49085916 49085916 C T RCBTB2 Missense_Mutation p.R258H 0.32 tolerated(0.58) possibly_damaging(0.782) TCGA-L5-A4OI-01 13 50206375 50206375 A - ARL11 3'UTR 0.39 TCGA-L5-A4OI-01 13 50279819 50279819 T - KPNA3 Frame_Shift_Del p.N437Tfs*3 0.42 TCGA-L5-A4OI-01 13 51825749 51825749 C T FAM124A Silent p.S118S 0.28 TCGA-L5-A4OI-01 13 52987727 52987727 C T VPS36 3'UTR 0.67 TCGA-L5-A4OI-01 13 58207948 58207948 C T PCDH17 Missense_Mutation p.T423M 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 13 58300615 58300615 T - PCDH17 3'UTR 0.21 TCGA-L5-A4OI-01 13 61985311 61985311 T - PCDH20 3'UTR 0.25 TCGA-L5-A4OI-01 13 67800478 67800478 C T PCDH9 Missense_Mutation p.E699K 0.26 tolerated(0.91) benign(0.017) TCGA-L5-A4OI-01 13 74265795 74265795 G A KLF12 3'UTR 0.55 TCGA-L5-A4OI-01 13 80095031 80095031 G A NDFIP2 Silent p.A136A 0.32 TCGA-L5-A4OI-01 13 80117695 80117695 G A NDFIP2 Missense_Mutation p.A240T 0.55 deleterious(0) probably_damaging(0.982) TCGA-L5-A4OI-01 13 84452106 84452106 A - SLITRK1 3'UTR 0.33 TCGA-L5-A4OI-01 13 84456130 84456130 C T SLITRK1 5'UTR 0.66 TCGA-L5-A4OI-01 13 88328551 88328551 C T SLITRK5 Missense_Mutation p.T303M 0.48 tolerated(0.1) benign(0.018) TCGA-L5-A4OI-01 13 95364174 95364174 C G SOX21 Missense_Mutation p.A44P 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A4OI-01 13 99047581 99047581 C T FARP1 Missense_Mutation p.P422L 0.55 tolerated(0.11) benign(0) TCGA-L5-A4OI-01 13 99446457 99446457 A - DOCK9 3'UTR 0.76 TCGA-L5-A4OI-01 13 99502312 99502312 A - DOCK9 Frame_Shift_Del p.F1334Lfs*19 0.22 TCGA-L5-A4OI-01 13 99907471 99907471 G A GPR18 Missense_Mutation p.T219M 0.34 deleterious(0) probably_damaging(0.985) TCGA-L5-A4OI-01 13 99947438 99947438 C A GPR183 Missense_Mutation p.R321M 0.21 deleterious(0.01) benign(0.305) TCGA-L5-A4OI-01 14 100182232 100182232 G A CYP46A1 Missense_Mutation p.R260H 0.44 deleterious(0.02) benign(0.159) TCGA-L5-A4OI-01 14 100728643 100728644 - A YY1 Frame_Shift_Ins p.D231Rfs*3 0.37 TCGA-L5-A4OI-01 14 102027841 102027841 G A DIO3 Missense_Mutation p.R3H 0.41 deleterious_low_confidence(0.01) benign(0) TCGA-L5-A4OI-01 14 102494139 102494139 C T DYNC1H1 Missense_Mutation p.R3078W 0.47 probably_damaging(0.999) TCGA-L5-A4OI-01 14 102549248 102549248 G A HSP90AA1 Intron 0.20 TCGA-L5-A4OI-01 14 102802052 102802052 T - ZNF839 Frame_Shift_Del p.F514Sfs*36 0.19 TCGA-L5-A4OI-01 14 104153422 104153422 G A KLC1 Missense_Mutation p.G552D 0.49 tolerated_low_confidence(0.05) benign(0.162) TCGA-L5-A4OI-01 14 105457831 105457831 C T C14orf79 Silent p.N191N 0.32 TCGA-L5-A4OI-01 14 105609864 105609864 T C JAG2 Missense_Mutation p.T1066A 0.46 tolerated(0.53) benign(0.011) TCGA-L5-A4OI-01 14 105996409 105996409 C T TMEM121 3'UTR 0.33 TCGA-L5-A4OI-01 14 106725205 106725205 G A IGHV3-23 Missense_Mutation p.A116V 0.30 tolerated_low_confidence(0.07) benign(0.02) TCGA-L5-A4OI-01 14 107178830 107178830 C T IGHV2-70 Missense_Mutation p.C116Y 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A4OI-01 14 19563232 19563232 T C POTEG Intron 0.54 TCGA-L5-A4OI-01 14 20248642 20248642 A G OR4M1 Missense_Mutation p.H54R 0.24 tolerated(0.93) benign(0.005) TCGA-L5-A4OI-01 14 21216537 21216537 G A EDDM3A 3'UTR 0.58 TCGA-L5-A4OI-01 14 21424213 21424213 C T RNASE2 Missense_Mutation p.R95C 0.38 tolerated(0.16) possibly_damaging(0.856) TCGA-L5-A4OI-01 14 21788248 21788248 A - RPGRIP1 Frame_Shift_Del p.N461Mfs*45 0.36 TCGA-L5-A4OI-01 14 21899050 21899050 C T CHD8 Silent p.Q251Q 0.48 TCGA-L5-A4OI-01 14 23020682 23020688 GGCAATG CGGCAATGC AE000662.92 5'Flank 0.37 TCGA-L5-A4OI-01 14 23243319 23243319 C T SLC7A7 Missense_Mutation p.V418I 0.19 tolerated(0.16) benign(0.001) TCGA-L5-A4OI-01 14 23346171 23346171 G A LRP10 Missense_Mutation p.R526H 0.36 deleterious(0) probably_damaging(0.961) TCGA-L5-A4OI-01 14 23420794 23420794 C T HAUS4 Silent p.A145A 0.30 TCGA-L5-A4OI-01 14 23745310 23745310 A - HOMEZ Frame_Shift_Del p.L376Yfs*14 0.38 TCGA-L5-A4OI-01 14 23778157 23778157 T - BCL2L2 Frame_Shift_Del p.F190Lfs*55 0.24 TCGA-L5-A4OI-01 14 23794607 23794608 - T PABPN1 3'UTR 0.27 TCGA-L5-A4OI-01 14 23795296 23795296 T - PABPN1 3'UTR 0.32 TCGA-L5-A4OI-01 14 24020620 24020620 G A ZFHX2 5'UTR 0.46 TCGA-L5-A4OI-01 14 24034973 24034974 - C AP1G2 Intron 0.26 TCGA-L5-A4OI-01 14 24527032 24527032 C T LRRC16B Silent p.H387H 0.47 TCGA-L5-A4OI-01 14 24529193 24529193 G T LRRC16B Missense_Mutation p.R628L 0.36 deleterious(0) benign(0.416) TCGA-L5-A4OI-01 14 24542776 24542776 T - CPNE6 Frame_Shift_Del p.F81Lfs*49 0.32 TCGA-L5-A4OI-01 14 24654089 24654089 G A IPO4 Silent p.S502S 0.46 TCGA-L5-A4OI-01 14 24885036 24885036 G A NYNRIN Missense_Mutation p.G1361S 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-L5-A4OI-01 14 31066642 31066642 C T G2E3 Missense_Mutation p.A182V 0.32 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OI-01 14 31852855 31852855 G A HEATR5A Missense_Mutation p.R197C 0.44 deleterious(0.02) benign(0.099) TCGA-L5-A4OI-01 14 32625839 32625839 A - ARHGAP5 3'UTR 0.57 TCGA-L5-A4OI-01 14 33299431 33299431 A G AKAP6 3'UTR 0.43 TCGA-L5-A4OI-01 14 36005057 36005057 T - INSM2 Frame_Shift_Del p.F535Lfs*6 0.30 TCGA-L5-A4OI-01 14 36041863 36041863 C T RALGAPA1 Missense_Mutation p.R1918K 0.39 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OI-01 14 36986274 36986274 A T NKX2-1 3'UTR 0.39 TCGA-L5-A4OI-01 14 37050375 37050375 G T NKX2-8 Missense_Mutation p.P151H 0.61 deleterious(0.03) benign(0.219) TCGA-L5-A4OI-01 14 38060273 38060273 G A FOXA1 3'UTR 0.40 TCGA-L5-A4OI-01 14 38678935 38678935 T C SSTR1 Missense_Mutation p.L114P 0.65 deleterious(0) probably_damaging(0.912) TCGA-L5-A4OI-01 14 38725473 38725473 G A CLEC14A 5'UTR 0.37 TCGA-L5-A4OI-01 14 42373581 42373582 - T LRFN5 3'UTR 0.32 TCGA-L5-A4OI-01 14 45433438 45433438 C T FAM179B Missense_Mutation p.A605V 0.36 deleterious(0.05) benign(0.197) TCGA-L5-A4OI-01 14 45645955 45645955 A - FANCM Frame_Shift_Del p.V1336Lfs*2 0.33 TCGA-L5-A4OI-01 14 47530713 47530713 G T MDGA2 Missense_Mutation p.R422S 0.50 tolerated(0.12) probably_damaging(0.999) TCGA-L5-A4OI-01 14 50361331 50361331 T - ARF6 3'UTR 0.29 TCGA-L5-A4OI-01 14 50735881 50735881 C T L2HGDH Silent p.P302P 0.32 TCGA-L5-A4OI-01 14 51387719 51387719 G A PYGL Missense_Mutation p.R243C 0.40 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OI-01 14 52195310 52195310 C T FRMD6 3'UTR 0.59 TCGA-L5-A4OI-01 14 53360081 53360082 - T FERMT2 Frame_Shift_Ins p.K153Efs*5 0.29 TCGA-L5-A4OI-01 14 54416605 54416605 T A BMP4 3'UTR 0.24 TCGA-L5-A4OI-01 14 55625371 55625371 T - DLGAP5 Frame_Shift_Del p.N581Mfs*3 0.33 TCGA-L5-A4OI-01 14 57672469 57672469 A - EXOC5 3'UTR 0.43 TCGA-L5-A4OI-01 14 57673298 57673298 A - EXOC5 3'UTR 0.32 TCGA-L5-A4OI-01 14 59961902 59961902 G A JKAMP Missense_Mutation p.V140I 0.29 tolerated(0.2) benign(0.002) TCGA-L5-A4OI-01 14 60591260 60591260 G A PCNXL4 Missense_Mutation p.A557T 0.50 tolerated(0.56) benign(0.001) TCGA-L5-A4OI-01 14 62162351 62162351 C T HIF1A 5'Flank 0.56 TCGA-L5-A4OI-01 14 62207881 62207881 G A HIF1A Missense_Mutation p.V714M 0.56 tolerated(0.13) benign(0.078) TCGA-L5-A4OI-01 14 64450606 64450606 T C SYNE2 Splice_Site p.X717_splice 0.36 TCGA-L5-A4OI-01 14 65009180 65009180 G A HSPA2 Missense_Mutation p.R538Q 0.65 deleterious_low_confidence(0.02) benign(0.233) TCGA-L5-A4OI-01 14 65194674 65194674 G A PLEKHG3 Missense_Mutation p.V109I 0.43 tolerated(0.06) probably_damaging(0.987) TCGA-L5-A4OI-01 14 68157945 68157945 G A RDH11 Silent p.H122H 0.23 TCGA-L5-A4OI-01 14 69255351 69255352 - T ZFP36L1 3'UTR 0.28 TCGA-L5-A4OI-01 14 70477591 70477591 G A SMOC1 Missense_Mutation p.C262Y 0.48 deleterious(0) possibly_damaging(0.857) TCGA-L5-A4OI-01 14 72055970 72055970 G A SIPA1L1 Missense_Mutation p.A461T 0.11 deleterious(0) probably_damaging(0.957) TCGA-L5-A4OI-01 14 73407001 73407001 C - DCAF4 Frame_Shift_Del p.L91* 0.16 TCGA-L5-A4OI-01 14 73720568 73720568 G A PAPLN Missense_Mutation p.V374M 0.40 tolerated(0.1) benign(0.027) TCGA-L5-A4OI-01 14 73729128 73729128 C T PAPLN Silent p.F745F 0.39 TCGA-L5-A4OI-01 14 73959974 73959974 T - HEATR4 Intron 0.31 TCGA-L5-A4OI-01 14 74205773 74205773 G - ELMSAN1 Frame_Shift_Del p.N314Tfs*4 0.39 TCGA-L5-A4OI-01 14 74438598 74438598 C T ENTPD5 Silent p.G347G 0.19 TCGA-L5-A4OI-01 14 74995695 74995695 G A LTBP2 Silent p.G706G 0.38 TCGA-L5-A4OI-01 14 75248115 75248115 C T YLPM1 Nonsense_Mutation p.R457* 0.49 TCGA-L5-A4OI-01 14 76012833 76012833 C T BATF Missense_Mutation p.A66V 0.41 deleterious(0.05) probably_damaging(0.968) TCGA-L5-A4OI-01 14 76117768 76117768 A - C14orf1 3'UTR 0.28 TCGA-L5-A4OI-01 14 77685187 77685187 G - TMEM63C Frame_Shift_Del p.G12Efs*6 0.36 TCGA-L5-A4OI-01 14 80329787 80329787 A - NRXN3 3'Flank 0.35 TCGA-L5-A4OI-01 14 80329955 80329955 T - NRXN3 3'Flank 0.31 TCGA-L5-A4OI-01 14 81945992 81945992 G A SEL1L Silent p.G713G 0.45 TCGA-L5-A4OI-01 14 86089811 86089811 C T FLRT2 Silent p.S651S 0.33 TCGA-L5-A4OI-01 14 86093788 86093788 A T FLRT2 3'UTR 0.40 TCGA-L5-A4OI-01 14 89878615 89878615 C T FOXN3 Missense_Mutation p.S69N 0.27 tolerated(0.1) benign(0.033) TCGA-L5-A4OI-01 14 91360602 91360603 - A RPS6KA5 Intron 0.32 TCGA-L5-A4OI-01 14 91700596 91700596 C T GPR68 Missense_Mutation p.A267T 0.46 tolerated(0.29) benign(0.047) TCGA-L5-A4OI-01 14 92960729 92960729 A - SLC24A4 3'UTR 0.33 TCGA-L5-A4OI-01 14 93392964 93392964 C T CHGA Silent p.I36I 0.28 TCGA-L5-A4OI-01 14 94088050 94088050 A - UNC79 Frame_Shift_Del p.K1316Sfs*12 0.33 TCGA-L5-A4OI-01 14 95556342 95556342 G A DICER1 3'UTR 0.46 TCGA-L5-A4OI-01 14 99638592 99638592 C A BCL11B 3'UTR 0.42 TCGA-L5-A4OI-01 14 99640143 99640143 A - BCL11B 3'UTR 0.38 TCGA-L5-A4OI-01 14 99871696 99871696 A - SETD3 Frame_Shift_Del p.Y313Mfs*10 0.36 TCGA-L5-A4OI-01 14 99977661 99977661 T - CCDC85C 3'UTR 0.65 TCGA-L5-A4OI-01 15 100821565 100821565 G A ADAMTS17 Missense_Mutation p.R220W 0.36 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OI-01 15 101438350 101438350 G - ALDH1A3 Frame_Shift_Del p.K284Rfs*83 0.30 TCGA-L5-A4OI-01 15 101566237 101566237 G A LRRK1 Missense_Mutation p.R767H 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-L5-A4OI-01 15 102226169 102226169 C T TARSL2 Missense_Mutation p.E473K 0.36 tolerated(0.07) benign(0.262) TCGA-L5-A4OI-01 15 102506268 102506268 C A MIR1302-11 5'Flank 0.08 TCGA-L5-A4OI-01 15 20643921 20643921 G T HERC2P3 RNA 0.17 TCGA-L5-A4OI-01 15 22742753 22742753 C T GOLGA6L1 Missense_Mutation p.R380W 0.20 unknown(0) TCGA-L5-A4OI-01 15 22945143 22945144 GC - CYFIP1 Frame_Shift_Del p.H407Rfs*26 0.27 TCGA-L5-A4OI-01 15 23048238 23048239 - TC NIPA1 3'UTR 0.24 TCGA-L5-A4OI-01 15 23311345 23311345 G A HERC2P2 RNA 0.55 TCGA-L5-A4OI-01 15 23812683 23812683 T - MKRN3 3'UTR 0.39 TCGA-L5-A4OI-01 15 24921798 24921798 C - NPAP1 Frame_Shift_Del p.P263Lfs*19 0.37 TCGA-L5-A4OI-01 15 24925744 24925744 A T NPAP1 3'UTR 0.48 TCGA-L5-A4OI-01 15 25310193 25310193 A - SNORD116-6 RNA 0.47 TCGA-L5-A4OI-01 15 25332684 25332684 G A SNORD116-23 5'Flank 0.18 TCGA-L5-A4OI-01 15 25438540 25438540 G A SNORD115-11 3'Flank 0.43 TCGA-L5-A4OI-01 15 25959230 25959230 C T ATP10A Silent p.P645P 0.40 TCGA-L5-A4OI-01 15 26107956 26107956 C A ATP10A Silent p.L96L 0.26 TCGA-L5-A4OI-01 15 26806289 26806289 G A GABRB3 Silent p.N290N 0.40 TCGA-L5-A4OI-01 15 28447658 28447658 C T HERC2 Missense_Mutation p.A2439T 0.39 benign(0) TCGA-L5-A4OI-01 15 31324956 31324956 C T TRPM1 Missense_Mutation p.R980H 0.37 deleterious(0.03) probably_damaging(1) TCGA-L5-A4OI-01 15 31669829 31669830 - T KLF13 3'UTR 0.32 TCGA-L5-A4OI-01 15 33443448 33443448 A - FMN1 3'UTR 0.23 TCGA-L5-A4OI-01 15 34112980 34112980 A T RYR3 Missense_Mutation p.E3594D 0.44 benign(0.002) TCGA-L5-A4OI-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.35 TCGA-L5-A4OI-01 15 34820022 34820022 C T GOLGA8B Silent p.A541A 0.21 TCGA-L5-A4OI-01 15 36937462 36937462 G A C15orf41 Silent p.S62S 0.31 TCGA-L5-A4OI-01 15 37183447 37183447 T - MEIS2 3'UTR 0.58 TCGA-L5-A4OI-01 15 37391750 37391750 T C MEIS2 5'UTR 0.38 TCGA-L5-A4OI-01 15 40093306 40093306 G A GPR176 3'UTR 0.40 TCGA-L5-A4OI-01 15 40280227 40280227 A G EIF2AK4 Missense_Mutation p.Q816R 0.49 tolerated(0.12) benign(0.014) TCGA-L5-A4OI-01 15 40326639 40326639 A - EIF2AK4 Frame_Shift_Del p.K1631Rfs*48 0.30 TCGA-L5-A4OI-01 15 41371904 41371904 G A INO80 Missense_Mutation p.R376W 0.38 deleterious(0.02) probably_damaging(0.958) TCGA-L5-A4OI-01 15 41688939 41688939 C A NDUFAF1 Nonsense_Mutation p.G107* 0.26 TCGA-L5-A4OI-01 15 41794044 41794044 C T ITPKA Silent p.G266G 0.47 TCGA-L5-A4OI-01 15 42105843 42105843 G A MAPKBP1 Missense_Mutation p.V288M 0.36 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OI-01 15 42127036 42127036 C T JMJD7-PLA2G4B Missense_Mutation p.R55C 0.20 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-L5-A4OI-01 15 42171563 42171563 A G SPTBN5 Missense_Mutation p.L1026P 0.31 possibly_damaging(0.768) TCGA-L5-A4OI-01 15 42185690 42185690 A G SPTBN5 Silent p.A2A 0.30 TCGA-L5-A4OI-01 15 42479523 42479523 C T VPS39 Silent p.A160A 0.35 TCGA-L5-A4OI-01 15 45003745 45003745 A T B2M Translation_Start_Site p.M1? 0.53 deleterious(0) possibly_damaging(0.456) TCGA-L5-A4OI-01 15 45007798 45007801 TCTA - B2M Frame_Shift_Del p.Y83Sfs*19 0.39 TCGA-L5-A4OI-01 15 45405204 45405204 G A DUOX2 Silent p.H47H 0.58 TCGA-L5-A4OI-01 15 48435037 48435038 - A MYEF2 3'UTR 0.36 TCGA-L5-A4OI-01 15 48441553 48441553 C T MYEF2 Missense_Mutation p.S465N 0.26 tolerated(0.53) benign(0.043) TCGA-L5-A4OI-01 15 48702276 48702276 A - FBN1 3'UTR 0.43 TCGA-L5-A4OI-01 15 49117048 49117048 A G SHC4 3'UTR 0.44 TCGA-L5-A4OI-01 15 49170653 49170653 G A EID1 Missense_Mutation p.E94K 0.45 tolerated(0.11) benign(0.246) TCGA-L5-A4OI-01 15 49254776 49254776 G A SHC4 Missense_Mutation p.P146L 0.43 tolerated(0.36) benign(0.005) TCGA-L5-A4OI-01 15 49777844 49777844 G A FGF7 3'UTR 0.45 TCGA-L5-A4OI-01 15 50853498 50853498 C T TRPM7 3'UTR 0.32 TCGA-L5-A4OI-01 15 51787281 51787281 G T DMXL2 Missense_Mutation p.L1575I 0.39 tolerated(0.12) probably_damaging(0.999) TCGA-L5-A4OI-01 15 52571792 52571792 G A MYO5C Missense_Mutation p.T73M 0.35 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 15 52843256 52843256 C T ARPP19 3'UTR 0.46 TCGA-L5-A4OI-01 15 53081749 53081749 C T ONECUT1 Silent p.P111P 0.38 TCGA-L5-A4OI-01 15 54685306 54685306 T G UNC13C Missense_Mutation p.W1592G 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OI-01 15 55912892 55912892 A G PRTG Missense_Mutation p.F1056S 0.26 deleterious(0.03) benign(0.063) TCGA-L5-A4OI-01 15 56383240 56383241 - A RFX7 3'UTR 0.31 TCGA-L5-A4OI-01 15 56735707 56735707 C T MNS1 Missense_Mutation p.R311Q 0.42 tolerated(1) benign(0.008) TCGA-L5-A4OI-01 15 56958728 56958728 C T ZNF280D Missense_Mutation p.R620H 0.50 tolerated(0.44) benign(0.006) TCGA-L5-A4OI-01 15 57580220 57580221 - A TCF12 3'UTR 0.33 TCGA-L5-A4OI-01 15 58001499 58001499 T C POLR2M Missense_Mutation p.V234A 0.36 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 15 59148462 59148462 T - FAM63B 3'UTR 0.38 TCGA-L5-A4OI-01 15 59368393 59368393 C T RNF111 Nonsense_Mutation p.R643* 0.35 TCGA-L5-A4OI-01 15 59383348 59383348 A - RNF111 Frame_Shift_Del p.K922Rfs*29 0.46 TCGA-L5-A4OI-01 15 63133470 63133470 G A TLN2 3'UTR 0.45 TCGA-L5-A4OI-01 15 63571457 63571457 C A APH1B Missense_Mutation p.L71M 0.38 deleterious(0) probably_damaging(0.968) TCGA-L5-A4OI-01 15 64424092 64424092 G A SNX1 Splice_Site p.X407_splice 0.40 TCGA-L5-A4OI-01 15 64673593 64673593 G T KIAA0101 5'UTR 0.23 TCGA-L5-A4OI-01 15 64967247 64967247 A - ZNF609 Frame_Shift_Del p.K734Rfs*12 0.33 TCGA-L5-A4OI-01 15 64980593 64980593 C - OAZ2 3'UTR 0.19 TCGA-L5-A4OI-01 15 65499358 65499358 G A CILP Silent p.I62I 0.48 TCGA-L5-A4OI-01 15 65621021 65621021 G T IGDCC3 3'UTR 0.56 TCGA-L5-A4OI-01 15 66007940 66007940 C T DENND4A Missense_Mutation p.R610Q 0.44 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 15 67793139 67793139 T - IQCH 3'UTR 0.32 TCGA-L5-A4OI-01 15 68483439 68483439 T - CALML4 3'Flank 0.21 TCGA-L5-A4OI-01 15 68500615 68500615 C T CLN6 Missense_Mutation p.A267T 0.31 tolerated(0.36) benign(0.001) TCGA-L5-A4OI-01 15 69072248 69072248 G A ANP32A 3'UTR 0.62 TCGA-L5-A4OI-01 15 70991908 70991908 T - UACA Frame_Shift_Del p.K57Rfs*8 0.33 TCGA-L5-A4OI-01 15 71125091 71125091 G A LARP6 Missense_Mutation p.A259V 0.24 tolerated(0.15) possibly_damaging(0.831) TCGA-L5-A4OI-01 15 72552881 72552881 G - PARP6 Frame_Shift_Del p.Q232Rfs*41 0.11 TCGA-L5-A4OI-01 15 72638557 72638557 C - HEXA Intron 0.30 TCGA-L5-A4OI-01 15 74363576 74363576 C A GOLGA6A Missense_Mutation p.G615C 0.44 deleterious(0.04) benign(0.191) TCGA-L5-A4OI-01 15 74573101 74573101 A - CCDC33 Frame_Shift_Del p.G329Afs*17 0.31 TCGA-L5-A4OI-01 15 74627334 74627334 C T CCDC33 Missense_Mutation p.R682C 0.31 deleterious(0) probably_damaging(0.975) TCGA-L5-A4OI-01 15 75499804 75499804 C - C15orf39 Frame_Shift_Del p.P474Qfs*91 0.35 TCGA-L5-A4OI-01 15 75558448 75558448 G A GOLGA6C Missense_Mutation p.E284K 0.09 tolerated(0.17) benign(0.004) TCGA-L5-A4OI-01 15 75562260 75562260 C T GOLGA6C Missense_Mutation p.P630S 0.31 deleterious(0.05) benign(0.154) TCGA-L5-A4OI-01 15 75890909 75890909 C T SNUPN Silent p.P291P 0.48 TCGA-L5-A4OI-01 15 76633630 76633630 C A ISL2 Silent p.A317A 0.45 TCGA-L5-A4OI-01 15 77067201 77067201 T - SCAPER Frame_Shift_Del p.T344Pfs*5 0.36 TCGA-L5-A4OI-01 15 77310871 77310874 AAGT - PSTPIP1 Splice_Site p.X71_splice 0.28 TCGA-L5-A4OI-01 15 79058838 79058838 G T ADAMTS7 Missense_Mutation p.R1139S 0.34 tolerated(0.87) benign(0.001) TCGA-L5-A4OI-01 15 81217986 81217986 C T KIAA1199 Silent p.A770A 0.39 TCGA-L5-A4OI-01 15 81296263 81296263 T - MESDC1 3'UTR 0.53 TCGA-L5-A4OI-01 15 81598438 81598438 C T IL16 Missense_Mutation p.P1204S 0.27 tolerated(0.44) benign(0.002) TCGA-L5-A4OI-01 15 81636316 81636316 C T TMC3 Missense_Mutation p.R530Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 15 83499658 83499658 C T WHAMM Missense_Mutation p.P650L 0.08 tolerated(0.08) possibly_damaging(0.871) TCGA-L5-A4OI-01 15 83805312 83805312 T - TM6SF1 Frame_Shift_Del p.L336* 0.33 TCGA-L5-A4OI-01 15 84237360 84237360 G A SH3GL3 Silent p.T89T 0.42 TCGA-L5-A4OI-01 15 84287070 84287070 G A SH3GL3 3'UTR 0.36 TCGA-L5-A4OI-01 15 86810253 86810253 G A AGBL1 Missense_Mutation p.R549Q 0.28 tolerated(0.15) benign(0.012) TCGA-L5-A4OI-01 15 88576214 88576214 C T NTRK3 Missense_Mutation p.G487S 0.31 deleterious(0.05) possibly_damaging(0.907) TCGA-L5-A4OI-01 15 89417894 89417894 C T ACAN 3'UTR 0.48 TCGA-L5-A4OI-01 15 89876858 89876858 T C POLG Missense_Mutation p.Q43R 0.48 tolerated(0.51) benign(0) TCGA-L5-A4OI-01 15 90802159 90802159 G T TTLL13 Missense_Mutation p.R451M 0.47 deleterious(0) possibly_damaging(0.754) TCGA-L5-A4OI-01 15 90892013 90892014 CA - GABARAPL3 3'UTR 0.27 TCGA-L5-A4OI-01 15 91485759 91485759 G A UNC45A Silent p.L260L 0.31 TCGA-L5-A4OI-01 15 92690355 92690355 A G SLCO3A1 Missense_Mutation p.M552V 0.39 tolerated(0.43) probably_damaging(0.994) TCGA-L5-A4OI-01 15 96881226 96881264 TCCAAATTATTAATTGTCCTGTGTCTATGTACCTCTAGC CCAAATTATTAATTGTCCTGTGTCTATGTACCTCTAGCAACA NR2F2 3'UTR 0.23 TCGA-L5-A4OI-01 15 96881488 96881488 G A NR2F2 3'UTR 0.36 TCGA-L5-A4OI-01 15 99442809 99442809 A - IGF1R Frame_Shift_Del p.N404Tfs*6 0.33 TCGA-L5-A4OI-01 15 99502751 99502751 C T IGF1R 3'UTR 0.35 TCGA-L5-A4OI-01 15 99505650 99505650 C T IGF1R 3'UTR 0.58 TCGA-L5-A4OI-01 15 99512698 99512698 T C PGPEP1L Silent p.V109V 0.29 TCGA-L5-A4OI-01 15 99670066 99670066 G A SYNM Missense_Mutation p.E500K 0.31 tolerated(0.13) probably_damaging(0.969) TCGA-L5-A4OI-01 15 99672504 99672504 T C SYNM Silent p.I1312I 0.43 TCGA-L5-A4OI-01 16 11272291 11272291 C T CLEC16A Missense_Mutation p.A969V 0.41 tolerated_low_confidence(0.32) benign(0.002) TCGA-L5-A4OI-01 16 11367443 11367443 G A PRM3 Missense_Mutation p.R4C 0.55 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-L5-A4OI-01 16 1245456 1245456 T - CACNA1H Frame_Shift_Del p.F147Lfs*37 0.36 TCGA-L5-A4OI-01 16 1291473 1291473 G A TPSAB1 Missense_Mutation p.R91Q 0.36 tolerated(0.12) possibly_damaging(0.708) TCGA-L5-A4OI-01 16 14346300 14346300 C - MKL2 Frame_Shift_Del p.R834Afs*44 0.38 TCGA-L5-A4OI-01 16 15131990 15131990 T - NTAN1 Frame_Shift_Del p.K277Nfs*83 0.39 TCGA-L5-A4OI-01 16 1545436 1545436 G A TELO2 Missense_Mutation p.R142Q 0.38 tolerated(0.93) benign(0.002) TCGA-L5-A4OI-01 16 15820799 15820802 TTCT A MYH11 In_Frame_Del p.K1261_K1262delinsM 0.09 TCGA-L5-A4OI-01 16 162652 162652 C T NPRL3 Silent p.A172A 0.35 TCGA-L5-A4OI-01 16 17292232 17292232 T G XYLT1 Silent p.R376R 0.37 TCGA-L5-A4OI-01 16 1798334 1798334 C T MAPK8IP3 Missense_Mutation p.R361C 0.41 tolerated(0.13) possibly_damaging(0.734) TCGA-L5-A4OI-01 16 1818241 1818241 G - MAPK8IP3 Frame_Shift_Del p.G1202Afs*38 0.29 TCGA-L5-A4OI-01 16 1878290 1878290 A G FAHD1 Intron 0.39 TCGA-L5-A4OI-01 16 1878291 1878291 A G FAHD1 Intron 0.33 TCGA-L5-A4OI-01 16 19884026 19884026 G T GPRC5B Missense_Mutation p.L48M 0.50 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 16 2028034 2028034 G A TBL3 Silent p.R678R 0.35 TCGA-L5-A4OI-01 16 202873 202873 A G HBZ 5'UTR 0.31 TCGA-L5-A4OI-01 16 20360037 20360037 C T UMOD Missense_Mutation p.D196N 0.50 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 16 20871003 20871003 A - DCUN1D3 3'UTR 0.36 TCGA-L5-A4OI-01 16 2088265 2088265 C A SLC9A3R2 3'UTR 0.29 TCGA-L5-A4OI-01 16 2126499 2126499 G A TSC2 Missense_Mutation p.R917Q 0.67 tolerated(0.15) possibly_damaging(0.519) TCGA-L5-A4OI-01 16 2147956 2147956 G A PKD1 Silent p.A3360A 0.43 TCGA-L5-A4OI-01 16 2156530 2156530 C T PKD1 Missense_Mutation p.R2453H 0.47 benign(0.002) TCGA-L5-A4OI-01 16 2227425 2227425 T - CASKIN1 3'UTR 0.29 TCGA-L5-A4OI-01 16 23073701 23073705 TTAAA - USP31 3'UTR 0.33 TCGA-L5-A4OI-01 16 24578711 24578711 A G RBBP6 Missense_Mutation p.T613A 0.41 tolerated_low_confidence(0.26) possibly_damaging(0.582) TCGA-L5-A4OI-01 16 2522299 2522299 C - NTN3 Frame_Shift_Del p.P201Qfs*15 0.26 TCGA-L5-A4OI-01 16 2653650 2653650 G A PDPK1 3'Flank 0.37 TCGA-L5-A4OI-01 16 2814067 2814069 CCT - SRRM2 In_Frame_Del p.P1181del 0.56 TCGA-L5-A4OI-01 16 28507636 28507636 C T APOBR Missense_Mutation p.P425L 0.41 tolerated(0.52) possibly_damaging(0.851) TCGA-L5-A4OI-01 16 28913313 28913313 G A ATP2A1 Missense_Mutation p.V744I 0.44 deleterious(0.03) benign(0.083) TCGA-L5-A4OI-01 16 29825042 29825042 G A PRRT2 Missense_Mutation p.V223I 0.29 tolerated_low_confidence(0.05) probably_damaging(0.94) TCGA-L5-A4OI-01 16 29831227 29831228 - GT PAGR1 3'UTR 0.35 TCGA-L5-A4OI-01 16 2983467 2983467 C A FLYWCH1 Missense_Mutation p.P377Q 0.36 tolerated(0.08) benign(0.145) TCGA-L5-A4OI-01 16 29855904 29855904 C T MVP Silent p.I575I 0.30 TCGA-L5-A4OI-01 16 29989217 29989217 G A TAOK2 Missense_Mutation p.V42I 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.835) TCGA-L5-A4OI-01 16 29997584 29997584 A G TAOK2 Splice_Site p.X665_splice 0.33 TCGA-L5-A4OI-01 16 30078291 30078291 C - ALDOA Frame_Shift_Del p.P26Qfs*20 0.25 TCGA-L5-A4OI-01 16 30455655 30455655 A T SEPHS2 3'Flank 0.45 TCGA-L5-A4OI-01 16 30455931 30455931 C T SEPHS2 Missense_Mutation p.G373E 0.47 possibly_damaging(0.905) TCGA-L5-A4OI-01 16 30544043 30544043 C T ZNF747 3'UTR 0.47 TCGA-L5-A4OI-01 16 30662932 30662933 - C PRR14 5'UTR 0.31 TCGA-L5-A4OI-01 16 30664143 30664143 C T PRR14 Silent p.A98A 0.34 TCGA-L5-A4OI-01 16 30680769 30680769 T C FBRS Missense_Mutation p.Y916H 0.31 possibly_damaging(0.734) TCGA-L5-A4OI-01 16 30772913 30772913 C T C16orf93 Missense_Mutation p.A53T 0.41 deleterious_low_confidence(0.03) benign(0.026) TCGA-L5-A4OI-01 16 31091609 31091609 G A ZNF646 Missense_Mutation p.E1322K 0.33 tolerated(0.42) benign(0.236) TCGA-L5-A4OI-01 16 31154684 31154684 G A PRSS36 Missense_Mutation p.A360V 0.45 tolerated(0.1) benign(0.12) TCGA-L5-A4OI-01 16 31202855 31202856 - T FUS 3'UTR 0.37 TCGA-L5-A4OI-01 16 31474229 31474229 G A ARMC5 Missense_Mutation p.R454Q 0.28 tolerated(0.87) benign(0.011) TCGA-L5-A4OI-01 16 31488292 31488292 G A TGFB1I1 Silent p.A360A 0.52 TCGA-L5-A4OI-01 16 3170161 3170161 C T ZNF205 Silent p.G500G 0.45 TCGA-L5-A4OI-01 16 3194815 3194815 G A CASP16 5'UTR 0.35 TCGA-L5-A4OI-01 16 319648 319648 G A ITFG3 3'UTR 0.42 TCGA-L5-A4OI-01 16 32266560 32266560 C T TP53TG3D 3'UTR 0.36 TCGA-L5-A4OI-01 16 3349612 3349612 T C TIGD7 Missense_Mutation p.I335V 0.21 tolerated(0.11) benign(0.024) TCGA-L5-A4OI-01 16 3828084 3828085 - C CREBBP Frame_Shift_Ins p.N681Efs*45 0.28 TCGA-L5-A4OI-01 16 4016810 4016810 C T ADCY9 Missense_Mutation p.G1010R 0.48 deleterious(0) benign(0.37) TCGA-L5-A4OI-01 16 4039070 4039070 C T ADCY9 Silent p.P745P 0.53 TCGA-L5-A4OI-01 16 427458 427458 C T TMEM8A Missense_Mutation p.V143I 0.09 tolerated(0.41) benign(0.007) TCGA-L5-A4OI-01 16 46746626 46746626 A G MYLK3 Missense_Mutation p.V683A 0.41 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 16 47116055 47116055 A - NETO2 3'UTR 0.24 TCGA-L5-A4OI-01 16 47533773 47533773 T C PHKB Silent p.A91A 0.31 TCGA-L5-A4OI-01 16 4802783 4802783 G A ZNF500 Missense_Mutation p.T346I 0.32 tolerated(0.94) benign(0.021) TCGA-L5-A4OI-01 16 4854351 4854351 C - GLYR1 3'UTR 0.34 TCGA-L5-A4OI-01 16 4935547 4935547 G A PPL Missense_Mutation p.R1037C 0.42 deleterious(0) possibly_damaging(0.726) TCGA-L5-A4OI-01 16 50248153 50248153 A - PAPD5 Frame_Shift_Del p.T248Lfs*12 0.30 TCGA-L5-A4OI-01 16 50257096 50257096 G A PAPD5 Silent p.R378R 0.41 TCGA-L5-A4OI-01 16 50263437 50263455 AGCAAGCAAAAAAGAGGGA GCAAGCAAAAAAGAGGG PAPD5 3'UTR 0.34 TCGA-L5-A4OI-01 16 50263455 50263455 A - PAPD5 3'UTR 0.49 TCGA-L5-A4OI-01 16 50659407 50659407 C T NKD1 Silent p.C126C 0.36 TCGA-L5-A4OI-01 16 51169911 51169911 A - SALL1 3'UTR 0.45 TCGA-L5-A4OI-01 16 5128869 5128869 G A ALG1 Silent p.T284T 0.39 TCGA-L5-A4OI-01 16 5129771 5129771 T C ALG1 Silent p.D308D 0.06 TCGA-L5-A4OI-01 16 55903619 55903619 C T CES5A Missense_Mutation p.G181D 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 16 56926017 56926017 G A SLC12A3 Silent p.A797A 0.29 TCGA-L5-A4OI-01 16 57116500 57116500 G A NLRC5 3'UTR 0.43 TCGA-L5-A4OI-01 16 57283721 57283721 C T ARL2BP Missense_Mutation p.R84W 0.35 tolerated(0.1) benign(0.444) TCGA-L5-A4OI-01 16 57494707 57494707 G A COQ9 3'UTR 0.42 TCGA-L5-A4OI-01 16 58575501 58575501 C A CNOT1 Missense_Mutation p.Q1568H 0.42 deleterious(0.01) probably_damaging(0.926) TCGA-L5-A4OI-01 16 64980696 64980696 T - CDH11 3'UTR 0.15 TCGA-L5-A4OI-01 16 67143942 67143942 T C C16orf70 5'UTR 0.43 TCGA-L5-A4OI-01 16 67236803 67236803 G A ELMO3 Missense_Mutation p.R577Q 0.49 deleterious(0) probably_damaging(0.951) TCGA-L5-A4OI-01 16 67700903 67700903 G A C16orf86 Silent p.P10P 0.70 TCGA-L5-A4OI-01 16 69317976 69317976 C T SNTB2 Nonsense_Mutation p.R392* 0.66 TCGA-L5-A4OI-01 16 69752048 69752048 G A NQO1 Missense_Mutation p.A94V 0.70 deleterious(0.02) benign(0.226) TCGA-L5-A4OI-01 16 69985298 69985298 G - CLEC18A Frame_Shift_Del p.H12Ifs*32 0.17 TCGA-L5-A4OI-01 16 70253647 70253647 G A FKSG63 5'Flank 0.23 TCGA-L5-A4OI-01 16 70405395 70405395 G T DDX19A Missense_Mutation p.R435M 0.50 deleterious(0.03) possibly_damaging(0.889) TCGA-L5-A4OI-01 16 708575 708575 C T WDR90 Silent p.D939D 0.47 TCGA-L5-A4OI-01 16 70889081 70889081 G A HYDIN Silent p.S4131S 0.50 TCGA-L5-A4OI-01 16 70934983 70934983 G - HYDIN Frame_Shift_Del p.P2991Lfs*28 0.13 TCGA-L5-A4OI-01 16 71052314 71052314 T - HYDIN Frame_Shift_Del p.N1121Tfs*3 0.30 TCGA-L5-A4OI-01 16 711410 711410 T C WDR90 Silent p.S1194S 0.21 TCGA-L5-A4OI-01 16 712011 712011 C T WDR90 Missense_Mutation p.R1329C 0.57 tolerated(0.1) benign(0.001) TCGA-L5-A4OI-01 16 71674956 71674956 G A MARVELD3 3'UTR 0.32 TCGA-L5-A4OI-01 16 71765329 71765329 A - AP1G1 3'Flank 0.30 TCGA-L5-A4OI-01 16 72141562 72141562 G A DHX38 Missense_Mutation p.G943E 0.38 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 16 723725 723725 G A RHOT2 3'UTR 0.47 TCGA-L5-A4OI-01 16 72818687 72818687 A - ZFHX3 3'UTR 0.30 TCGA-L5-A4OI-01 16 72822521 72822521 C T ZFHX3 Silent p.P3218P 0.51 TCGA-L5-A4OI-01 16 72822738 72822738 G A ZFHX3 Missense_Mutation p.S3146F 0.13 unknown(0) TCGA-L5-A4OI-01 16 731956 731956 T C JMJD8 3'UTR 0.40 TCGA-L5-A4OI-01 16 7382996 7382996 G A RBFOX1 5'UTR 0.44 TCGA-L5-A4OI-01 16 744267 744267 G A FBXL16 3'UTR 0.33 TCGA-L5-A4OI-01 16 74640 74640 C T WASIR2 RNA 0.17 TCGA-L5-A4OI-01 16 75141918 75141918 A - ZNRF1 3'UTR 0.37 TCGA-L5-A4OI-01 16 75203538 75203539 - A ZFP1 Frame_Shift_Ins p.N179Kfs*12 0.29 TCGA-L5-A4OI-01 16 78420830 78420830 T C WWOX Missense_Mutation p.F197S 0.62 deleterious(0) probably_damaging(0.962) TCGA-L5-A4OI-01 16 78466429 78466429 G A WWOX Missense_Mutation p.R279H 0.23 tolerated(0.18) benign(0.002) TCGA-L5-A4OI-01 16 81077608 81077608 C T ATMIN Missense_Mutation p.T502M 0.31 tolerated(0.11) benign(0.378) TCGA-L5-A4OI-01 16 81198330 81198330 G A PKD1L2 RNA 0.42 TCGA-L5-A4OI-01 16 81208051 81208051 A G PKD1L2 3'UTR 0.33 TCGA-L5-A4OI-01 16 82182307 82182307 C - MPHOSPH6 3'UTR 0.31 TCGA-L5-A4OI-01 16 84050327 84050327 A G SLC38A8 Missense_Mutation p.V320A 0.44 deleterious(0.04) possibly_damaging(0.609) TCGA-L5-A4OI-01 16 84108235 84108235 G A MBTPS1 Silent p.N520N 0.52 TCGA-L5-A4OI-01 16 84127327 84127327 G A MBTPS1 Missense_Mutation p.T242M 0.29 deleterious(0.01) possibly_damaging(0.48) TCGA-L5-A4OI-01 16 84214674 84214674 G - TAF1C Frame_Shift_Del p.P454Lfs*14 0.27 TCGA-L5-A4OI-01 16 84797822 84797822 G A USP10 Silent p.A595A 0.27 TCGA-L5-A4OI-01 16 85010039 85010039 G - ZDHHC7 Frame_Shift_Del p.S317Hfs*5 0.24 TCGA-L5-A4OI-01 16 87440085 87440085 A G ZCCHC14 3'UTR 0.36 TCGA-L5-A4OI-01 16 87734466 87734466 T C FLJ00104 3'UTR 0.29 TCGA-L5-A4OI-01 16 88123704 88123704 C - RP11-863P13.4 RNA 0.22 TCGA-L5-A4OI-01 16 88497681 88497681 C A ZNF469 Missense_Mutation p.P1240Q 0.52 benign(0.028) TCGA-L5-A4OI-01 16 88499417 88499417 G A ZNF469 Missense_Mutation p.A1819T 0.44 benign(0.019) TCGA-L5-A4OI-01 16 88665107 88665107 G A ZC3H18 Missense_Mutation p.R306Q 0.23 deleterious_low_confidence(0) unknown(0) TCGA-L5-A4OI-01 16 88933000 88933001 - G PABPN1L Frame_Shift_Ins p.S6Efs*21 0.37 TCGA-L5-A4OI-01 16 88941493 88941493 G A CBFA2T3 3'UTR 0.58 TCGA-L5-A4OI-01 16 88952488 88952488 G A CBFA2T3 Silent p.P258P 0.41 TCGA-L5-A4OI-01 16 89347410 89347410 G A ANKRD11 Missense_Mutation p.S1847L 0.32 probably_damaging(0.996) TCGA-L5-A4OI-01 16 89349640 89349641 - T ANKRD11 Frame_Shift_Ins p.D1104Rfs*2 0.24 TCGA-L5-A4OI-01 16 89357574 89357574 G A ANKRD11 Missense_Mutation p.R82W 0.52 probably_damaging(0.973) TCGA-L5-A4OI-01 16 89614451 89614451 C T SPG7 Silent p.H531H 0.37 TCGA-L5-A4OI-01 16 89764315 89764315 G A SPATA2L Silent p.D234D 0.38 TCGA-L5-A4OI-01 16 89920954 89920954 G A SPIRE2 Silent p.V262V 0.22 TCGA-L5-A4OI-01 16 90038592 90038592 G A CENPBD1 5'UTR 0.39 TCGA-L5-A4OI-01 16 90162732 90162732 C T TUBB8P7 RNA 0.47 TCGA-L5-A4OI-01 16 9017259 9017259 G A USP7 Missense_Mutation p.R66C 0.38 deleterious(0) probably_damaging(0.95) TCGA-L5-A4OI-01 16 9857619 9857619 G A GRIN2A Missense_Mutation p.A1261V 0.32 tolerated(0.16) benign(0.152) TCGA-L5-A4OI-01 17 10216613 10216613 C A MYH13 Missense_Mutation p.R1348L 0.24 deleterious(0) possibly_damaging(0.453) TCGA-L5-A4OI-01 17 10356509 10356509 A G MYH4 Missense_Mutation p.L1024P 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 17 10370033 10370033 A - MYH4 Frame_Shift_Del p.F10Lfs*39 0.24 TCGA-L5-A4OI-01 17 11593190 11593190 A G DNAH9 Missense_Mutation p.R1351G 0.26 probably_damaging(0.918) TCGA-L5-A4OI-01 17 12044581 12044581 C T MAP2K4 3'UTR 0.23 TCGA-L5-A4OI-01 17 12666448 12666448 C A MYOCD Silent p.P816P 0.24 TCGA-L5-A4OI-01 17 12890456 12890456 G - ARHGAP44 Intron 0.31 TCGA-L5-A4OI-01 17 12903495 12903495 C T ELAC2 Silent p.A467A 0.12 TCGA-L5-A4OI-01 17 1368386 1368386 G A MYO1C 3'UTR 0.58 TCGA-L5-A4OI-01 17 1619894 1619894 C A MIR22HG 5'Flank 0.34 TCGA-L5-A4OI-01 17 17035001 17035001 C - MPRIP Frame_Shift_Del p.T166Hfs*43 0.37 TCGA-L5-A4OI-01 17 17394791 17394791 C T MED9 Silent p.F141F 0.31 TCGA-L5-A4OI-01 17 17409600 17409600 C T PEMT Silent p.T198T 0.36 TCGA-L5-A4OI-01 17 17696716 17696716 C - RAI1 Frame_Shift_Del p.S154Afs*98 0.31 TCGA-L5-A4OI-01 17 1783946 1783946 C T RPA1 Missense_Mutation p.A401V 0.29 tolerated(1) benign(0) TCGA-L5-A4OI-01 17 17891352 17891352 C T LRRC48 Silent p.D128D 0.56 TCGA-L5-A4OI-01 17 18023733 18023733 G A MYO15A Missense_Mutation p.R540H 0.40 possibly_damaging(0.522) TCGA-L5-A4OI-01 17 18150067 18150067 G A FLII Silent p.G964G 0.39 TCGA-L5-A4OI-01 17 18205660 18205660 G A TOP3A Silent p.C244C 0.30 TCGA-L5-A4OI-01 17 18681823 18681823 T A FBXW10 Missense_Mutation p.L791M 0.37 tolerated(0.12) benign(0.071) TCGA-L5-A4OI-01 17 18707518 18707518 G A TVP23B Missense_Mutation p.R177H 0.48 deleterious(0) benign(0.005) TCGA-L5-A4OI-01 17 18891589 18891589 G A FAM83G Missense_Mutation p.R221W 0.30 deleterious(0) possibly_damaging(0.874) TCGA-L5-A4OI-01 17 19246563 19246563 C T B9D1 3'UTR 0.35 TCGA-L5-A4OI-01 17 19261171 19261171 T - B9D1 Frame_Shift_Del p.S76Afs*83 0.36 TCGA-L5-A4OI-01 17 19618055 19618055 T C SLC47A2 Silent p.A91A 0.38 TCGA-L5-A4OI-01 17 20013849 20013849 C T SPECC1 Missense_Mutation p.T86M 0.54 deleterious(0.01) possibly_damaging(0.514) TCGA-L5-A4OI-01 17 21321254 21321254 C - KCNJ12 3'UTR 0.20 TCGA-L5-A4OI-01 17 25635132 25635132 T - WSB1 Intron 0.25 TCGA-L5-A4OI-01 17 2606773 2606774 - G CLUH Frame_Shift_Ins p.Q67Pfs*61 0.25 TCGA-L5-A4OI-01 17 26962454 26962454 G A KIAA0100 Silent p.G717G 0.47 TCGA-L5-A4OI-01 17 27185670 27185670 A C ERAL1 Missense_Mutation p.K263T 0.53 tolerated(0.08) benign(0.258) TCGA-L5-A4OI-01 17 27401360 27401360 C T TIAF1 5'UTR 0.42 TCGA-L5-A4OI-01 17 27448877 27448877 C T MYO18A Missense_Mutation p.V396I 0.35 tolerated(0.21) benign(0.01) TCGA-L5-A4OI-01 17 27778671 27778671 C T TAOK1 Silent p.G35G 0.20 TCGA-L5-A4OI-01 17 29546092 29546092 G A NF1 Missense_Mutation p.V533I 0.40 tolerated(0.14) possibly_damaging(0.891) TCGA-L5-A4OI-01 17 29704195 29704195 T - NF1 3'UTR 0.19 TCGA-L5-A4OI-01 17 30348815 30348815 G A LRRC37B Missense_Mutation p.R217H 0.55 tolerated(1) benign(0) TCGA-L5-A4OI-01 17 31087009 31087009 A G MYO1D Intron 0.25 TCGA-L5-A4OI-01 17 32483673 32483673 G A ASIC2 5'UTR 0.44 TCGA-L5-A4OI-01 17 33767862 33767862 C T SLFN13 Missense_Mutation p.V816M 0.51 tolerated(0.12) benign(0) TCGA-L5-A4OI-01 17 33953659 33953659 C A AP2B1 Missense_Mutation p.P246T 0.03 deleterious(0) probably_damaging(0.944) TCGA-L5-A4OI-01 17 34067487 34067487 C T RASL10B Silent p.Y92Y 0.47 TCGA-L5-A4OI-01 17 34862904 34862904 G - MYO19 Frame_Shift_Del p.C515Afs*41 0.30 TCGA-L5-A4OI-01 17 34913100 34913100 C T GGNBP2 Missense_Mutation p.P118S 0.41 tolerated(0.39) benign(0.003) TCGA-L5-A4OI-01 17 34934522 34934522 C T GGNBP2 Missense_Mutation p.R251W 0.44 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OI-01 17 3527392 3527392 A G SHPK Silent p.S148S 0.55 TCGA-L5-A4OI-01 17 3559997 3559997 G A CTNS Missense_Mutation p.G197R 0.34 deleterious(0.03) probably_damaging(0.997) TCGA-L5-A4OI-01 17 36623506 36623506 C T ARHGAP23 Missense_Mutation p.R528C 0.50 deleterious(0) possibly_damaging(0.855) TCGA-L5-A4OI-01 17 36890761 36890761 G A CISD3 3'UTR 0.47 TCGA-L5-A4OI-01 17 36943140 36943140 T C PIP4K2B Missense_Mutation p.M65V 0.46 tolerated(0.07) benign(0.119) TCGA-L5-A4OI-01 17 37381682 37381682 G A STAC2 Missense_Mutation p.A25V 0.43 tolerated(0.18) benign(0.001) TCGA-L5-A4OI-01 17 37650845 37650845 C T CDK12 Missense_Mutation p.R773C 0.37 probably_damaging(0.999) TCGA-L5-A4OI-01 17 37866417 37866417 C T ERBB2 Missense_Mutation p.A241V 0.35 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OI-01 17 37881000 37881000 G T ERBB2 Missense_Mutation p.V777L 0.30 deleterious(0.05) benign(0.006) TCGA-L5-A4OI-01 17 38182920 38182920 G T MED24 Missense_Mutation p.L597M 0.44 deleterious(0.01) probably_damaging(0.961) TCGA-L5-A4OI-01 17 38209978 38209978 G A MED24 Intron 0.50 TCGA-L5-A4OI-01 17 38711203 38711203 C T CCR7 Missense_Mutation p.V310I 0.41 tolerated(0.32) benign(0.03) TCGA-L5-A4OI-01 17 38976864 38976864 G A KRT10 Missense_Mutation p.R256C 0.07 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 17 39316800 39316800 G T KRTAP4-4 Silent p.P48P 0.48 TCGA-L5-A4OI-01 17 39324124 39324124 G A KRTAP4-3 Missense_Mutation p.R101C 0.39 deleterious(0) unknown(0) TCGA-L5-A4OI-01 17 39383280 39383280 C T KRTAP9-2 Missense_Mutation p.T125I 0.32 deleterious(0) probably_damaging(0.934) TCGA-L5-A4OI-01 17 39506827 39506827 C T KRT33A Missense_Mutation p.D65N 0.36 tolerated(0.11) benign(0.262) TCGA-L5-A4OI-01 17 39728172 39728172 C T KRT9 Missense_Mutation p.G25R 0.20 deleterious_low_confidence(0) unknown(0) TCGA-L5-A4OI-01 17 40179718 40179718 C T ZNF385C Missense_Mutation p.R399H 0.31 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 17 40459723 40459723 G A STAT5A Missense_Mutation p.A630T 0.36 deleterious(0) possibly_damaging(0.872) TCGA-L5-A4OI-01 17 40706467 40706469 AGA - HSD17B1 In_Frame_Del p.K196del 0.47 TCGA-L5-A4OI-01 17 4071046 4071046 C T ANKFY1 3'UTR 0.36 TCGA-L5-A4OI-01 17 4071196 4071196 G A ANKFY1 Silent p.C1171C 0.25 TCGA-L5-A4OI-01 17 40714557 40714557 G T COASY Intron 0.32 TCGA-L5-A4OI-01 17 40844640 40844640 A G CNTNAP1 Missense_Mutation p.K885R 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A4OI-01 17 40996995 40996995 C T AOC2 Missense_Mutation p.R118W 0.37 deleterious(0.02) probably_damaging(1) TCGA-L5-A4OI-01 17 42428095 42428095 G A GRN Missense_Mutation p.R212Q 0.10 tolerated(0.75) benign(0.003) TCGA-L5-A4OI-01 17 43037492 43037492 G A C1QL1 3'UTR 0.44 TCGA-L5-A4OI-01 17 43107517 43107518 - G DCAKD Frame_Shift_Ins p.L116Pfs*4 0.36 TCGA-L5-A4OI-01 17 43319736 43319736 T C FMNL1 Silent p.T638T 0.47 TCGA-L5-A4OI-01 17 4391253 4391253 G A SPNS3 3'UTR 0.47 TCGA-L5-A4OI-01 17 44248966 44248966 C T KANSL1 Missense_Mutation p.A182T 0.28 tolerated(0.14) benign(0.008) TCGA-L5-A4OI-01 17 44632696 44632696 T C LRRC37A2 Missense_Mutation p.Y1654H 0.81 deleterious(0) possibly_damaging(0.703) TCGA-L5-A4OI-01 17 45760047 45760047 A - KPNB1 3'UTR 0.31 TCGA-L5-A4OI-01 17 45760484 45760484 A C KPNB1 3'UTR 0.44 TCGA-L5-A4OI-01 17 45885767 45885767 T G OSBPL7 Splice_Site p.X807_splice 0.37 TCGA-L5-A4OI-01 17 45915676 45915676 C T SCRN2 Missense_Mutation p.R360H 0.53 deleterious(0.02) possibly_damaging(0.628) TCGA-L5-A4OI-01 17 4646651 4646651 A G ZMYND15 Missense_Mutation p.T400A 0.31 tolerated(0.1) probably_damaging(0.92) TCGA-L5-A4OI-01 17 47130161 47130161 A - IGF2BP1 3'UTR 0.42 TCGA-L5-A4OI-01 17 47132530 47132530 A T IGF2BP1 3'UTR 0.30 TCGA-L5-A4OI-01 17 4784488 4784488 A T MINK1 Missense_Mutation p.N81I 0.40 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OI-01 17 4789812 4789812 G A MINK1 Silent p.T280T 0.50 TCGA-L5-A4OI-01 17 47918915 47918915 T - TAC4 Frame_Shift_Del p.A84Hfs*101 0.33 TCGA-L5-A4OI-01 17 4803728 4803728 G A C17orf107 Missense_Mutation p.R158Q 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.566) TCGA-L5-A4OI-01 17 48191580 48191581 - G SAMD14 Frame_Shift_Ins p.Y333Lfs*10 0.31 TCGA-L5-A4OI-01 17 48431259 48431259 C T XYLT2 Missense_Mutation p.A135V 0.40 tolerated(0.27) possibly_damaging(0.734) TCGA-L5-A4OI-01 17 48433967 48433967 C - XYLT2 Frame_Shift_Del p.G529Afs*78 0.47 TCGA-L5-A4OI-01 17 48625088 48625088 G A SPATA20 Missense_Mutation p.G29R 0.51 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-L5-A4OI-01 17 48828375 48828375 G T LUC7L3 3'UTR 0.44 TCGA-L5-A4OI-01 17 48828891 48828892 - T LUC7L3 3'UTR 0.43 TCGA-L5-A4OI-01 17 48940076 48940076 A - TOB1 3'UTR 0.39 TCGA-L5-A4OI-01 17 49075879 49075879 G A SPAG9 Silent p.S588S 0.47 TCGA-L5-A4OI-01 17 49338044 49338044 G - UTP18 Frame_Shift_Del p.P35Qfs*44 0.28 TCGA-L5-A4OI-01 17 50008356 50008357 - C CA10 Frame_Shift_Ins p.R92Qfs*47 0.40 TCGA-L5-A4OI-01 17 5038552 5038552 T C USP6 Missense_Mutation p.L173P 0.03 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-L5-A4OI-01 17 5294889 5294889 C A NUP88 Missense_Mutation p.W492C 0.40 deleterious(0.02) benign(0.045) TCGA-L5-A4OI-01 17 53402171 53402171 C T HLF 3'UTR 0.37 TCGA-L5-A4OI-01 17 56435161 56435161 C - RNF43 Frame_Shift_Del p.G659Vfs*41 0.38 TCGA-L5-A4OI-01 17 56700371 56700371 C T TEX14 Missense_Mutation p.R85H 0.19 deleterious(0) probably_damaging(0.949) TCGA-L5-A4OI-01 17 59479054 59479054 C - TBX2 Frame_Shift_Del p.F138Sfs*17 0.31 TCGA-L5-A4OI-01 17 59485488 59485488 C T TBX2 Missense_Mutation p.A587V 0.41 tolerated(0.27) benign(0.288) TCGA-L5-A4OI-01 17 59533894 59533894 C T TBX4 Missense_Mutation p.R15W 0.39 deleterious_low_confidence(0.03) benign(0.18) TCGA-L5-A4OI-01 17 60344514 60344514 A C TBC1D3P2 RNA 0.39 TCGA-L5-A4OI-01 17 61585647 61585647 C T ACE 3'UTR 0.45 TCGA-L5-A4OI-01 17 61781804 61781804 G - STRADA Frame_Shift_Del p.R333Gfs*42 0.24 TCGA-L5-A4OI-01 17 62078849 62078849 C - C17orf72 Intron 0.36 TCGA-L5-A4OI-01 17 62602752 62602752 C T SMURF2 Missense_Mutation p.C20Y 0.34 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 17 62855814 62855814 C T LRRC37A3 Missense_Mutation p.V1484I 0.34 deleterious(0.01) benign(0.007) TCGA-L5-A4OI-01 17 62859282 62859282 A T LRRC37A3 Intron 0.43 TCGA-L5-A4OI-01 17 64873530 64873530 C T CACNG5 Missense_Mutation p.A27V 0.41 deleterious(0) possibly_damaging(0.902) TCGA-L5-A4OI-01 17 64873628 64873628 C T CACNG5 Missense_Mutation p.R60W 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 17 64875154 64875154 C T CACNG5 Silent p.S87S 0.47 TCGA-L5-A4OI-01 17 64881306 64881306 C T CACNG5 Silent p.P259P 0.32 TCGA-L5-A4OI-01 17 65073416 65073416 A - HELZ 3'UTR 0.34 TCGA-L5-A4OI-01 17 65980412 65980412 G A BPTF 3'Flank 0.14 TCGA-L5-A4OI-01 17 66246316 66246316 T - AMZ2 Intron 0.32 TCGA-L5-A4OI-01 17 67125767 67125767 A - ABCA6 Frame_Shift_Del p.L306Yfs*7 0.39 TCGA-L5-A4OI-01 17 67260954 67260954 G A ABCA5 Silent p.I1079I 0.34 TCGA-L5-A4OI-01 17 70122228 70122228 T - SOX9 3'UTR 0.40 TCGA-L5-A4OI-01 17 7095249 7095249 C T DLG4 Missense_Mutation p.A690T 0.36 deleterious(0) benign(0.341) TCGA-L5-A4OI-01 17 7129207 7129207 C T DVL2 Missense_Mutation p.E730K 0.37 deleterious(0.03) benign(0.305) TCGA-L5-A4OI-01 17 72539041 72539041 G A CD300C Silent p.S162S 0.31 TCGA-L5-A4OI-01 17 72954476 72954476 G A HID1 Silent p.R446R 0.52 TCGA-L5-A4OI-01 17 72999572 72999572 G A CDR2L Silent p.P267P 0.41 TCGA-L5-A4OI-01 17 7324849 7324849 C - SPEM1 Frame_Shift_Del p.L287* 0.31 TCGA-L5-A4OI-01 17 73490811 73490811 C T KIAA0195 Silent p.I837I 0.41 TCGA-L5-A4OI-01 17 73518162 73518162 G A TSEN54 Missense_Mutation p.A334T 0.42 deleterious(0.05) benign(0.104) TCGA-L5-A4OI-01 17 73560612 73560612 G A LLGL2 Intron 0.40 TCGA-L5-A4OI-01 17 73616646 73616646 G A MYO15B RNA 0.44 TCGA-L5-A4OI-01 17 7363469 7363469 C - ZBTB4 3'UTR 0.34 TCGA-L5-A4OI-01 17 73698584 73698584 C T SAP30BP Nonsense_Mutation p.R141* 0.35 TCGA-L5-A4OI-01 17 73732134 73732134 C T ITGB4 Nonsense_Mutation p.R554* 0.43 TCGA-L5-A4OI-01 17 74073035 74073035 C T GALR2 Silent p.R229R 0.59 TCGA-L5-A4OI-01 17 74079608 74079608 G A EXOC7 3'UTR 0.55 TCGA-L5-A4OI-01 17 74524670 74524670 G A CYGB Missense_Mutation p.S188L 0.37 deleterious_low_confidence(0.01) benign(0.033) TCGA-L5-A4OI-01 17 74730948 74730948 A - SRSF2 3'UTR 0.30 TCGA-L5-A4OI-01 17 74900438 74900438 C - MGAT5B Frame_Shift_Del p.P221Rfs*34 0.26 TCGA-L5-A4OI-01 17 74934124 74934124 G A MGAT5B Missense_Mutation p.V504M 0.43 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 17 75495503 75495503 G A SEPT9 3'UTR 0.33 TCGA-L5-A4OI-01 17 76047107 76047107 G - TNRC6C Frame_Shift_Del p.E657Rfs*3 0.32 TCGA-L5-A4OI-01 17 76200772 76200772 C T AFMID Missense_Mutation p.T115M 0.33 deleterious(0.02) probably_damaging(0.973) TCGA-L5-A4OI-01 17 76354966 76354966 G A SOCS3 Missense_Mutation p.R71C 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 17 76392418 76392418 C T PGS1 Silent p.V121V 0.41 TCGA-L5-A4OI-01 17 76455248 76455248 G A DNAH17 Silent p.R3218R 0.33 TCGA-L5-A4OI-01 17 76491157 76491157 C T DNAH17 Missense_Mutation p.D1962N 0.52 probably_damaging(0.939) TCGA-L5-A4OI-01 17 76799558 76799558 C T USP36 Missense_Mutation p.G907S 0.35 tolerated(0.58) benign(0.015) TCGA-L5-A4OI-01 17 77086915 77086916 - T RBFOX3 3'UTR 0.30 TCGA-L5-A4OI-01 17 7750429 7750429 C T KDM6B Missense_Mutation p.R306W 0.44 unknown(0) TCGA-L5-A4OI-01 17 77768912 77768912 A G CBX8 Missense_Mutation p.L231P 0.45 tolerated(0.09) benign(0.095) TCGA-L5-A4OI-01 17 7797811 7797811 G A CHD3 Missense_Mutation p.C444Y 0.37 possibly_damaging(0.712) TCGA-L5-A4OI-01 17 78055751 78055751 C T CCDC40 Missense_Mutation p.T628M 0.46 tolerated(1) benign(0.002) TCGA-L5-A4OI-01 17 78310294 78310294 G A RNF213 Intron 0.45 TCGA-L5-A4OI-01 17 78326965 78326965 G A RNF213 Intron 0.35 TCGA-L5-A4OI-01 17 78337441 78337441 G A RNF213 Silent p.T3867T 0.36 TCGA-L5-A4OI-01 17 7836294 7836297 CCTC - CNTROB 5'UTR 0.58 TCGA-L5-A4OI-01 17 79006821 79006821 G A BAIAP2 5'Flank 0.28 TCGA-L5-A4OI-01 17 79077331 79077331 G A BAIAP2 Silent p.P224P 0.40 TCGA-L5-A4OI-01 17 79164775 79164775 C T AZI1 Missense_Mutation p.E959K 0.39 deleterious(0) benign(0.432) TCGA-L5-A4OI-01 17 79409064 79409064 G A RP11-1055B8.7 Missense_Mutation p.G230D 0.42 benign(0.439) TCGA-L5-A4OI-01 17 79410506 79410506 C T RP11-1055B8.7 Missense_Mutation p.R711W 0.29 probably_damaging(0.997) TCGA-L5-A4OI-01 17 79612316 79612317 - G TSPAN10 Frame_Shift_Ins p.P115Afs*31 0.43 TCGA-L5-A4OI-01 17 79612420 79612420 A G TSPAN10 Missense_Mutation p.T147A 0.54 tolerated(1) benign(0.005) TCGA-L5-A4OI-01 17 79769607 79769607 C T GCGR Silent p.G246G 0.35 TCGA-L5-A4OI-01 17 80015944 80015944 C T DUS1L 3'UTR 0.44 TCGA-L5-A4OI-01 17 80041180 80041180 C A FASN Silent p.G1821G 0.38 TCGA-L5-A4OI-01 17 80047566 80047567 GG C FASN Frame_Shift_Del p.P636Gfs*30 0.09 TCGA-L5-A4OI-01 17 80121090 80121090 G A CCDC57 Nonsense_Mutation p.R676* 0.38 TCGA-L5-A4OI-01 17 80320144 80320144 G A TEX19 Missense_Mutation p.A40T 0.40 tolerated(0.22) benign(0.003) TCGA-L5-A4OI-01 17 80446103 80446103 C T NARF 3'UTR 0.50 TCGA-L5-A4OI-01 17 8046844 8046844 C T PER1 Missense_Mutation p.A938T 0.43 tolerated(0.45) benign(0.031) TCGA-L5-A4OI-01 17 8052896 8052896 C T PER1 Missense_Mutation p.R246Q 0.39 tolerated(0.15) benign(0.017) TCGA-L5-A4OI-01 17 8132624 8132624 C T CTC1 Missense_Mutation p.R1051Q 0.51 tolerated(0.46) benign(0.078) TCGA-L5-A4OI-01 17 8736327 8736327 G A PIK3R6 Silent p.H227H 0.31 TCGA-L5-A4OI-01 17 8741940 8741940 C T PIK3R6 Missense_Mutation p.E44K 0.42 tolerated(0.07) probably_damaging(0.999) TCGA-L5-A4OI-01 17 916344 916344 C - ABR Splice_Site p.X617_splice 0.33 TCGA-L5-A4OI-01 18 10752835 10752835 G T PIEZO2 Silent p.L1297L 0.29 TCGA-L5-A4OI-01 18 10759835 10759835 G A PIEZO2 Silent p.L1150L 0.40 TCGA-L5-A4OI-01 18 13387676 13387676 A G LDLRAD4 5'UTR 0.41 TCGA-L5-A4OI-01 18 14179418 14179418 C T ANKRD20A5P RNA 0.36 TCGA-L5-A4OI-01 18 14478362 14478362 G A CXADRP3 RNA 0.35 TCGA-L5-A4OI-01 18 21712572 21712572 C A TTC39C 3'UTR 0.27 TCGA-L5-A4OI-01 18 21745097 21745097 T - OSBPL1A Frame_Shift_Del p.K894Nfs*71 0.44 TCGA-L5-A4OI-01 18 22057444 22057444 G A HRH4 Missense_Mutation p.R364H 0.36 tolerated(0.26) benign(0.006) TCGA-L5-A4OI-01 18 22805739 22805739 C T ZNF521 Missense_Mutation p.D715N 0.44 deleterious(0) probably_damaging(0.986) TCGA-L5-A4OI-01 18 28648897 28648897 G A DSC2 Missense_Mutation p.S824L 0.38 deleterious(0.05) probably_damaging(0.916) TCGA-L5-A4OI-01 18 28711575 28711575 G T DSC1 Silent p.T823T 0.40 TCGA-L5-A4OI-01 18 28993367 28993367 A C DSG4 Missense_Mutation p.S997R 0.38 tolerated(0.09) benign(0.059) TCGA-L5-A4OI-01 18 3135553 3135554 - C MYOM1 Frame_Shift_Ins p.D734Gfs*4 0.31 TCGA-L5-A4OI-01 18 32468250 32468250 A - DTNA Intron 0.30 TCGA-L5-A4OI-01 18 32888394 32888394 A G ZNF271 RNA 0.24 TCGA-L5-A4OI-01 18 34205516 34205516 C - FHOD3 Frame_Shift_Del p.S336Vfs*138 0.34 TCGA-L5-A4OI-01 18 44140248 44140248 C A LOXHD1 5'Flank 0.45 TCGA-L5-A4OI-01 18 44682235 44682236 - A IER3IP1 3'UTR 0.31 TCGA-L5-A4OI-01 18 45566519 45566519 C - ZBTB7C Frame_Shift_Del p.P321Lfs*18 0.35 TCGA-L5-A4OI-01 18 46386220 46386221 - C CTIF 3'UTR 0.23 TCGA-L5-A4OI-01 18 54278226 54278226 G A TXNL1 Nonsense_Mutation p.R280* 0.37 TCGA-L5-A4OI-01 18 54363659 54363659 T C WDR7 Missense_Mutation p.I515T 0.39 deleterious(0) benign(0.33) TCGA-L5-A4OI-01 18 55103827 55103827 C T ONECUT2 Silent p.N293N 0.32 TCGA-L5-A4OI-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.47 TCGA-L5-A4OI-01 18 55283063 55283063 G A NARS Missense_Mutation p.R80W 0.39 deleterious(0.01) benign(0.006) TCGA-L5-A4OI-01 18 56246390 56246390 G A ALPK2 Missense_Mutation p.P540S 0.35 deleterious(0.02) probably_damaging(0.949) TCGA-L5-A4OI-01 18 56247704 56247704 C T ALPK2 Missense_Mutation p.V102I 0.37 tolerated(1) benign(0.002) TCGA-L5-A4OI-01 18 56646399 56646399 C T ZNF532 Missense_Mutation p.S1088L 0.40 tolerated(0.56) benign(0.002) TCGA-L5-A4OI-01 18 56963955 56963955 G A CPLX4 Missense_Mutation p.A153V 0.35 tolerated(0.05) probably_damaging(0.994) TCGA-L5-A4OI-01 18 59166500 59166500 G A CDH20 Missense_Mutation p.D110N 0.36 tolerated(0.16) probably_damaging(0.997) TCGA-L5-A4OI-01 18 60244151 60244152 - T ZCCHC2 3'UTR 0.73 TCGA-L5-A4OI-01 18 60645905 60645905 C T PHLPP1 Silent p.G1465G 0.42 TCGA-L5-A4OI-01 18 61565041 61565041 A - SERPINB2 Frame_Shift_Del p.K168Rfs*23 0.29 TCGA-L5-A4OI-01 18 65177020 65177020 G T DSEL 3'UTR 0.19 TCGA-L5-A4OI-01 18 67345063 67345063 C T DOK6 Missense_Mutation p.A128V 0.42 tolerated(0.05) benign(0.056) TCGA-L5-A4OI-01 18 6914975 6914975 A - ARHGAP28 3'UTR 0.31 TCGA-L5-A4OI-01 18 6948545 6948545 C A LAMA1 Missense_Mutation p.S2856I 0.44 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 18 6961668 6961668 C T LAMA1 Missense_Mutation p.A2515T 0.34 tolerated(0.06) benign(0.344) TCGA-L5-A4OI-01 18 7049079 7049079 G A LAMA1 Missense_Mutation p.R256C 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 18 70532046 70532046 C T NETO1 Missense_Mutation p.E73K 0.38 deleterious(0) possibly_damaging(0.685) TCGA-L5-A4OI-01 18 72346707 72346707 C - ZNF407 Frame_Shift_Del p.H1246Tfs*7 0.22 TCGA-L5-A4OI-01 18 72910953 72910953 A - ZADH2 3'UTR 0.31 TCGA-L5-A4OI-01 18 76753309 76753309 C T SALL3 Missense_Mutation p.R440C 0.45 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 18 77898222 77898222 G A ADNP2 3'UTR 0.35 TCGA-L5-A4OI-01 18 9536810 9536810 C T RALBP1 3'UTR 0.39 TCGA-L5-A4OI-01 19 10419281 10419281 G A ZGLP1 Missense_Mutation p.P26L 0.53 deleterious_low_confidence(0.03) benign(0.004) TCGA-L5-A4OI-01 19 10434093 10434093 G - RAVER1 Frame_Shift_Del p.G320Afs*204 0.34 TCGA-L5-A4OI-01 19 10468442 10468442 C T TYK2 Missense_Mutation p.E822K 0.42 deleterious(0.02) probably_damaging(0.974) TCGA-L5-A4OI-01 19 10579158 10579158 C - PDE4A 3'UTR 0.27 TCGA-L5-A4OI-01 19 10610581 10610581 C T KEAP1 Silent p.T43T 0.27 TCGA-L5-A4OI-01 19 10668530 10668530 C T KRI1 Silent p.K473K 0.23 TCGA-L5-A4OI-01 19 10745884 10745886 CTT - SLC44A2 In_Frame_Del p.F369del 0.60 TCGA-L5-A4OI-01 19 1080107 1080107 G A HMHA1 Missense_Mutation p.A581T 0.36 tolerated(0.52) benign(0.005) TCGA-L5-A4OI-01 19 10939808 10939808 C T DNM2 Missense_Mutation p.R719W 0.44 deleterious(0.01) possibly_damaging(0.852) TCGA-L5-A4OI-01 19 10961063 10961063 G - C19orf38 Frame_Shift_Del p.Q56Rfs*15 0.36 TCGA-L5-A4OI-01 19 11032871 11032872 - T CARM1 3'UTR 0.23 TCGA-L5-A4OI-01 19 11141498 11141498 G - SMARCA4 Frame_Shift_Del p.L1161Sfs*3 0.28 TCGA-L5-A4OI-01 19 11531480 11531480 G A CCDC151 3'UTR 0.53 TCGA-L5-A4OI-01 19 11591485 11591485 G - ELAVL3 5'UTR 0.39 TCGA-L5-A4OI-01 19 11624897 11624897 G A ECSIT Missense_Mutation p.A79V 0.44 tolerated(0.25) benign(0.256) TCGA-L5-A4OI-01 19 11649718 11649718 C - CNN1 5'UTR 0.31 TCGA-L5-A4OI-01 19 11941145 11941145 G T ZNF440 Missense_Mutation p.E17D 0.41 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 19 11944595 11944595 G A ZNF440 3'UTR 0.50 TCGA-L5-A4OI-01 19 12902519 12902519 C T JUNB 5'UTR 0.33 TCGA-L5-A4OI-01 19 1383724 1383724 G A NDUFS7 5'UTR 0.33 TCGA-L5-A4OI-01 19 1395345 1395345 C T NDUFS7 Intron 0.54 TCGA-L5-A4OI-01 19 1435196 1435196 T - DAZAP1 3'UTR 0.36 TCGA-L5-A4OI-01 19 14590322 14590322 G A GIPC1 Missense_Mutation p.R224C 0.46 deleterious(0) possibly_damaging(0.53) TCGA-L5-A4OI-01 19 1474829 1474829 C T C19orf25 3'UTR 0.30 TCGA-L5-A4OI-01 19 15052470 15052470 C T OR7C2 Missense_Mutation p.T57I 0.38 deleterious_low_confidence(0.01) benign(0.336) TCGA-L5-A4OI-01 19 15376314 15376314 C T BRD4 Missense_Mutation p.V234I 0.42 unknown(0) TCGA-L5-A4OI-01 19 16060212 16060212 G A OR10H4 Missense_Mutation p.R132H 0.43 tolerated(0.25) benign(0.002) TCGA-L5-A4OI-01 19 1611195 1611195 A - TCF3 3'UTR 0.47 TCGA-L5-A4OI-01 19 16212344 16212344 T - TPM4 3'UTR 0.26 TCGA-L5-A4OI-01 19 16314384 16314384 G - AP1M1 Frame_Shift_Del p.V55Sfs*194 0.29 TCGA-L5-A4OI-01 19 16472690 16472690 T - EPS15L1 Frame_Shift_Del p.K829Rfs*166 0.28 TCGA-L5-A4OI-01 19 16633994 16633994 G - CHERP Frame_Shift_Del p.H617Mfs*38 0.42 TCGA-L5-A4OI-01 19 16666161 16666161 G A SLC35E1 Silent p.S268S 0.28 TCGA-L5-A4OI-01 19 16687924 16687925 - G MED26 Frame_Shift_Ins p.G240Wfs*42 0.29 TCGA-L5-A4OI-01 19 17374897 17374898 - T USHBP1 Frame_Shift_Ins p.P40Afs*31 0.22 TCGA-L5-A4OI-01 19 17487856 17487856 T C PLVAP Missense_Mutation p.Q81R 0.44 tolerated(0.67) benign(0.007) TCGA-L5-A4OI-01 19 18330172 18330172 C T PDE4C Missense_Mutation p.A280T 0.56 tolerated(0.56) benign(0.001) TCGA-L5-A4OI-01 19 19302971 19302971 G A MEF2BNB 5'UTR 0.41 TCGA-L5-A4OI-01 19 19371676 19371676 C T HAPLN4 Missense_Mutation p.E144K 0.45 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 19 19646460 19646460 C - YJEFN3 Frame_Shift_Del p.L224Sfs*2 0.23 TCGA-L5-A4OI-01 19 19748865 19748865 G A GMIP Missense_Mutation p.A264V 0.40 tolerated(1) benign(0.007) TCGA-L5-A4OI-01 19 20002726 20002726 G A ZNF253 Missense_Mutation p.G224R 0.46 deleterious(0.03) possibly_damaging(0.864) TCGA-L5-A4OI-01 19 20228702 20228702 A - ZNF90 Frame_Shift_Del p.G116Vfs*22 0.28 TCGA-L5-A4OI-01 19 2038031 2038031 C - MKNK2 3'UTR 0.47 TCGA-L5-A4OI-01 19 2078178 2078178 C T MOB3A Missense_Mutation p.A128T 0.34 tolerated(0.65) benign(0.054) TCGA-L5-A4OI-01 19 2129358 2129358 A G AP3D1 Missense_Mutation p.S231P 0.37 deleterious(0) probably_damaging(0.947) TCGA-L5-A4OI-01 19 21476363 21476363 T - ZNF708 Frame_Shift_Del p.I469Ffs*28 0.33 TCGA-L5-A4OI-01 19 2226760 2226760 C T DOT1L Missense_Mutation p.R1414W 0.42 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-L5-A4OI-01 19 2252783 2252783 C T JSRP1 Missense_Mutation p.A181T 0.35 tolerated(0.08) benign(0.001) TCGA-L5-A4OI-01 19 23543033 23543033 G T ZNF91 Silent p.G916G 0.49 TCGA-L5-A4OI-01 19 23926337 23926337 T - ZNF681 3'UTR 0.78 TCGA-L5-A4OI-01 19 2426965 2426965 C A TIMM13 Missense_Mutation p.R90L 0.05 deleterious(0) benign(0.199) TCGA-L5-A4OI-01 19 2434830 2434830 G A LMNB2 Missense_Mutation p.R313C 0.43 deleterious(0) probably_damaging(0.988) TCGA-L5-A4OI-01 19 2807603 2807603 C T THOP1 Silent p.C350C 0.47 TCGA-L5-A4OI-01 19 2915522 2915522 C T ZNF57 Silent p.D2D 0.21 TCGA-L5-A4OI-01 19 30020813 30020813 G A VSTM2B Missense_Mutation p.V129M 0.53 deleterious(0) probably_damaging(0.969) TCGA-L5-A4OI-01 19 30314868 30314869 - T CCNE1 3'UTR 0.46 TCGA-L5-A4OI-01 19 30503199 30503199 G A URI1 Missense_Mutation p.V396I 0.42 deleterious(0) possibly_damaging(0.844) TCGA-L5-A4OI-01 19 31769235 31769235 T - TSHZ3 Frame_Shift_Del p.D489Tfs*19 0.20 TCGA-L5-A4OI-01 19 33130392 33130392 A G ANKRD27 Missense_Mutation p.M329T 0.13 deleterious(0) benign(0.149) TCGA-L5-A4OI-01 19 33168814 33168814 C - RGS9BP 3'UTR 0.33 TCGA-L5-A4OI-01 19 34304928 34304928 C - KCTD15 3'UTR 0.27 TCGA-L5-A4OI-01 19 3534441 3534441 C T FZR1 Missense_Mutation p.A457V 0.41 tolerated(0.24) probably_damaging(0.93) TCGA-L5-A4OI-01 19 35617803 35617803 G A LGI4 Silent p.S249S 0.49 TCGA-L5-A4OI-01 19 35769985 35769985 C T USF2 Intron 0.27 TCGA-L5-A4OI-01 19 3589527 3589527 G - GIPC3 Frame_Shift_Del p.A229Lfs*55 0.32 TCGA-L5-A4OI-01 19 3590411 3590411 G T GIPC3 3'UTR 0.36 TCGA-L5-A4OI-01 19 36034636 36034636 C T GAPDHS Silent p.L321L 0.42 TCGA-L5-A4OI-01 19 36229256 36229256 G A KMT2B Missense_Mutation p.R2649H 0.46 probably_damaging(0.992) TCGA-L5-A4OI-01 19 37383887 37383887 C T ZNF829 Intron 0.50 TCGA-L5-A4OI-01 19 37677212 37677212 C T ZNF585B Silent p.S409S 0.36 TCGA-L5-A4OI-01 19 3807217 3807217 C T ZFR2 Missense_Mutation p.E866K 0.38 tolerated(0.84) benign(0.009) TCGA-L5-A4OI-01 19 38698904 38698904 T - SIPA1L3 3'UTR 0.33 TCGA-L5-A4OI-01 19 38981338 38981338 G A RYR1 Silent p.L2031L 0.42 TCGA-L5-A4OI-01 19 3913846 3913846 C T ATCAY Silent p.C319C 0.35 TCGA-L5-A4OI-01 19 39398218 39398218 C T NFKBIB Silent p.H296H 0.52 TCGA-L5-A4OI-01 19 39760216 39760216 T G IFNL2 Missense_Mutation p.V120G 0.12 tolerated(1) benign(0) TCGA-L5-A4OI-01 19 39760220 39760220 C T IFNL2 Silent p.D121D 0.12 TCGA-L5-A4OI-01 19 3980633 3980633 G A EEF2 Missense_Mutation p.R409W 0.43 deleterious(0) probably_damaging(0.976) TCGA-L5-A4OI-01 19 3985391 3985391 C T EEF2 5'UTR 0.21 TCGA-L5-A4OI-01 19 4033558 4033558 C T PIAS4 Silent p.Y374Y 0.42 TCGA-L5-A4OI-01 19 40395898 40395898 G A FCGBP Missense_Mutation p.A2500V 0.22 benign(0.034) TCGA-L5-A4OI-01 19 40421199 40421199 C T FCGBP Missense_Mutation p.E908K 0.43 probably_damaging(0.988) TCGA-L5-A4OI-01 19 40721329 40721329 G - MAP3K10 3'UTR 0.79 TCGA-L5-A4OI-01 19 40842247 40842247 G A C19orf47 Silent p.A66A 0.40 TCGA-L5-A4OI-01 19 40883777 40883777 C T PLD3 Missense_Mutation p.R424C 0.36 deleterious(0) possibly_damaging(0.872) TCGA-L5-A4OI-01 19 40895566 40895566 C T HIPK4 Missense_Mutation p.A82T 0.33 tolerated(0.19) benign(0.05) TCGA-L5-A4OI-01 19 40901307 40901307 G A PRX Silent p.G984G 0.48 TCGA-L5-A4OI-01 19 41271081 41271081 C - SNRPA 3'UTR 0.19 TCGA-L5-A4OI-01 19 41313052 41313052 G A EGLN2 Missense_Mutation p.G325S 0.53 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OI-01 19 41727120 41727120 C T AXL Silent p.F126F 0.42 TCGA-L5-A4OI-01 19 41808818 41808818 G - HNRNPUL1 Frame_Shift_Del p.G647Efs*268 0.27 TCGA-L5-A4OI-01 19 4233255 4233255 C - EBI3 Frame_Shift_Del p.W112Gfs*11 0.12 TCGA-L5-A4OI-01 19 42383610 42383610 C - CD79A Frame_Shift_Del p.R131Gfs*61 0.24 TCGA-L5-A4OI-01 19 42585085 42585085 G A ZNF574 Missense_Mutation p.R776H 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-L5-A4OI-01 19 42595149 42595150 - T POU2F2 3'Flank 0.31 TCGA-L5-A4OI-01 19 42600367 42600367 G A POU2F2 Missense_Mutation p.P177L 0.30 deleterious(0.03) benign(0.097) TCGA-L5-A4OI-01 19 42713965 42713965 C T DEDD2 Missense_Mutation p.R159Q 0.46 tolerated(0.58) benign(0) TCGA-L5-A4OI-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.40 TCGA-L5-A4OI-01 19 42838221 42838221 C T MEGF8 Silent p.R138R 0.25 TCGA-L5-A4OI-01 19 4302396 4302396 C - TMIGD2 5'UTR 0.35 TCGA-L5-A4OI-01 19 4409561 4409564 CCTT - CHAF1A Frame_Shift_Del p.L256Qfs*9 0.43 TCGA-L5-A4OI-01 19 44981824 44981824 C A ZNF180 Nonsense_Mutation p.E292* 0.46 TCGA-L5-A4OI-01 19 45202434 45202434 G A CEACAM16 5'UTR 0.18 TCGA-L5-A4OI-01 19 45295733 45295733 G A CBLC Missense_Mutation p.G367R 0.41 deleterious(0.02) probably_damaging(1) TCGA-L5-A4OI-01 19 4538425 4538425 G A LRG1 Missense_Mutation p.R191C 0.49 deleterious(0.01) probably_damaging(0.932) TCGA-L5-A4OI-01 19 45567329 45567329 G A CLASRP Missense_Mutation p.R322H 0.62 tolerated(0.16) benign(0.007) TCGA-L5-A4OI-01 19 45790780 45790780 G A MARK4 Missense_Mutation p.R451Q 0.41 tolerated(0.16) benign(0.001) TCGA-L5-A4OI-01 19 45911872 45911872 A - CD3EAP Frame_Shift_Del p.N218Ifs*4 0.37 TCGA-L5-A4OI-01 19 45976872 45976872 C - FOSB 3'UTR 0.16 TCGA-L5-A4OI-01 19 45976892 45976892 C - FOSB 3'UTR 0.30 TCGA-L5-A4OI-01 19 46215043 46215043 G A FBXO46 Missense_Mutation p.R571C 0.47 deleterious(0) possibly_damaging(0.738) TCGA-L5-A4OI-01 19 47150982 47150982 A - DACT3 3'UTR 0.35 TCGA-L5-A4OI-01 19 47177940 47177940 C T PRKD2 Missense_Mutation p.R826Q 0.39 deleterious(0.03) probably_damaging(0.974) TCGA-L5-A4OI-01 19 47223036 47223036 C A STRN4 3'UTR 0.42 TCGA-L5-A4OI-01 19 47278169 47278169 A - SLC1A5 3'UTR 0.36 TCGA-L5-A4OI-01 19 47824042 47824042 G A C5AR1 Silent p.T336T 0.47 TCGA-L5-A4OI-01 19 47876105 47876105 G A DHX34 Silent p.A629A 0.39 TCGA-L5-A4OI-01 19 47884244 47884244 C A DHX34 Missense_Mutation p.L1052I 0.48 tolerated(0.09) probably_damaging(0.993) TCGA-L5-A4OI-01 19 4792859 4792859 G - FEM1A Frame_Shift_Del p.G333Afs*31 0.29 TCGA-L5-A4OI-01 19 47932273 47932274 - C SLC8A2 3'UTR 0.27 TCGA-L5-A4OI-01 19 48025197 48025197 T - ZNF541 Frame_Shift_Del p.M1228* 0.31 TCGA-L5-A4OI-01 19 4816464 4816465 - G TICAM1 Frame_Shift_Ins p.P643Tfs*123 0.27 TCGA-L5-A4OI-01 19 48878957 48878957 G A SYNGR4 Missense_Mutation p.S140N 0.33 tolerated(0.19) benign(0.015) TCGA-L5-A4OI-01 19 48982475 48982475 C A CYTH2 3'UTR 0.49 TCGA-L5-A4OI-01 19 4910891 4910891 C T UHRF1 RNA 0.41 TCGA-L5-A4OI-01 19 49110930 49110930 A T SPACA4 3'UTR 0.38 TCGA-L5-A4OI-01 19 49113185 49113185 G A FAM83E Missense_Mutation p.R236W 0.34 deleterious(0.01) probably_damaging(0.97) TCGA-L5-A4OI-01 19 49238616 49238616 T C RASIP1 Missense_Mutation p.Q339R 0.34 tolerated(0.43) benign(0.346) TCGA-L5-A4OI-01 19 49341300 49341300 G A PLEKHA4 Missense_Mutation p.A684V 0.35 deleterious_low_confidence(0) possibly_damaging(0.747) TCGA-L5-A4OI-01 19 4944160 4944160 C A UHRF1 RNA 0.30 TCGA-L5-A4OI-01 19 49610906 49610906 G A SNRNP70 Missense_Mutation p.R201K 0.49 tolerated(0.23) benign(0.113) TCGA-L5-A4OI-01 19 49850472 49850473 - G TEAD2 Frame_Shift_Ins p.H299Pfs*19 0.34 TCGA-L5-A4OI-01 19 50119416 50119416 G - PRR12 Frame_Shift_Del p.G1814Afs*45 0.36 TCGA-L5-A4OI-01 19 50363527 50363527 G - PTOV1 Frame_Shift_Del p.*417Sfs*14 0.35 TCGA-L5-A4OI-01 19 50783570 50783570 G A MYH14 Missense_Mutation p.R1407H 0.38 tolerated(0.08) possibly_damaging(0.872) TCGA-L5-A4OI-01 19 50819305 50819305 G - KCNC3 3'UTR 0.41 TCGA-L5-A4OI-01 19 50837602 50837602 C - KCNC3 5'Flank 0.41 TCGA-L5-A4OI-01 19 51192559 51192559 G - SHANK1 Intron 0.38 TCGA-L5-A4OI-01 19 51767229 51767229 C T SIGLECL1 5'UTR 0.60 TCGA-L5-A4OI-01 19 51919993 51919993 G A SIGLEC10 Silent p.T211T 0.39 TCGA-L5-A4OI-01 19 51981849 51981849 G A CEACAM18 Missense_Mutation p.A46T 0.41 tolerated_low_confidence(0.27) benign(0.246) TCGA-L5-A4OI-01 19 5239054 5239054 C T PTPRS Silent p.P575P 0.22 TCGA-L5-A4OI-01 19 52568352 52568352 A C ZNF841 3'UTR 0.41 TCGA-L5-A4OI-01 19 52659253 52659253 C A ZNF836 Missense_Mutation p.K561N 0.36 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OI-01 19 52780711 52780712 - AA ZNF766 Intron 0.42 TCGA-L5-A4OI-01 19 52803666 52803666 A G ZNF480 Translation_Start_Site p.M1? 0.36 deleterious(0.01) benign(0.019) TCGA-L5-A4OI-01 19 53005160 53005160 A G ZNF578 Missense_Mutation p.Q21R 0.29 deleterious(0.01) possibly_damaging(0.888) TCGA-L5-A4OI-01 19 53013904 53013904 G A ZNF578 Silent p.L90L 0.36 TCGA-L5-A4OI-01 19 53794811 53794811 T - BIRC8 5'UTR 0.27 TCGA-L5-A4OI-01 19 54313244 54313244 C T NLRP12 Missense_Mutation p.A557T 0.45 tolerated(0.37) benign(0.4) TCGA-L5-A4OI-01 19 54759311 54759311 C T LILRB5 Missense_Mutation p.V264I 0.43 tolerated(0.59) benign(0.077) TCGA-L5-A4OI-01 19 54844919 54844919 G - LILRA4 Frame_Shift_Del p.P475Qfs*69 0.28 TCGA-L5-A4OI-01 19 54848276 54848276 G - LILRA4 Frame_Shift_Del p.P364Rfs*4 0.41 TCGA-L5-A4OI-01 19 55333053 55333053 C T KIR3DL1 Missense_Mutation p.P230L 0.50 tolerated(0.35) benign(0.003) TCGA-L5-A4OI-01 19 55340914 55340914 A - KIR3DL1 Frame_Shift_Del p.N369Mfs*4 0.35 TCGA-L5-A4OI-01 19 55349154 55349154 A C KIR2DS4 Missense_Mutation p.K65T 0.28 tolerated_low_confidence(0.31) benign(0.021) TCGA-L5-A4OI-01 19 55450978 55450978 C T NLRP7 Silent p.P403P 0.30 TCGA-L5-A4OI-01 19 55570534 55570534 C T RDH13 Missense_Mutation p.A59T 0.55 deleterious(0.01) possibly_damaging(0.874) TCGA-L5-A4OI-01 19 55598783 55598783 G A EPS8L1 Missense_Mutation p.V689M 0.33 deleterious(0.01) possibly_damaging(0.809) TCGA-L5-A4OI-01 19 55610355 55610355 G A PPP1R12C Silent p.A280A 0.41 TCGA-L5-A4OI-01 19 55869962 55869962 C A FAM71E2 Missense_Mutation p.Q758H 0.41 deleterious(0.02) possibly_damaging(0.642) TCGA-L5-A4OI-01 19 55899415 55899415 T C RPL28 Missense_Mutation p.M108T 0.53 tolerated(0.1) possibly_damaging(0.881) TCGA-L5-A4OI-01 19 56203122 56203122 G A EPN1 Silent p.S341S 0.27 TCGA-L5-A4OI-01 19 56203184 56203184 G - EPN1 Frame_Shift_Del p.G364Afs*164 0.26 TCGA-L5-A4OI-01 19 57035841 57035841 G A ZNF471 Missense_Mutation p.M135I 0.33 tolerated(0.43) benign(0.001) TCGA-L5-A4OI-01 19 57325797 57325797 C A PEG3 Missense_Mutation p.G1338V 0.38 tolerated(0.05) probably_damaging(0.946) TCGA-L5-A4OI-01 19 57640238 57640239 - A USP29 Frame_Shift_Ins p.R68Kfs*18 0.41 TCGA-L5-A4OI-01 19 57988704 57988704 C A ZNF772 5'UTR 0.30 TCGA-L5-A4OI-01 19 58320156 58320156 C A ZNF552 Missense_Mutation p.R159M 0.39 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 19 58361288 58361288 T G ZNF587 5'UTR 0.11 TCGA-L5-A4OI-01 19 58514282 58514282 G A CTD-2368P22.1 Silent p.A268A 0.33 TCGA-L5-A4OI-01 19 58549418 58549418 C T ZSCAN1 Missense_Mutation p.R72C 0.56 tolerated(0.28) benign(0.002) TCGA-L5-A4OI-01 19 59067561 59067561 G A UBE2M Silent p.A149A 0.39 TCGA-L5-A4OI-01 19 6010242 6010242 G A RFX2 Missense_Mutation p.T307M 0.46 tolerated(0.8) benign(0.004) TCGA-L5-A4OI-01 19 6413511 6413511 C T KHSRP 3'UTR 0.42 TCGA-L5-A4OI-01 19 6458220 6458220 C T SLC25A23 Missense_Mutation p.R91Q 0.30 deleterious(0.03) possibly_damaging(0.649) TCGA-L5-A4OI-01 19 6467256 6467256 G A DENND1C 3'UTR 0.38 TCGA-L5-A4OI-01 19 6694571 6694571 C A C3 Missense_Mutation p.G1009C 0.50 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 19 6697481 6697481 G - C3 Frame_Shift_Del p.K891Sfs*13 0.33 TCGA-L5-A4OI-01 19 6743770 6743770 G A TRIP10 Missense_Mutation p.E189K 0.42 deleterious(0) possibly_damaging(0.771) TCGA-L5-A4OI-01 19 6750380 6750380 C - TRIP10 Frame_Shift_Del p.A438Lfs*49 0.31 TCGA-L5-A4OI-01 19 7504999 7504999 C T ARHGEF18 Missense_Mutation p.A58V 0.38 deleterious_low_confidence(0.02) benign(0.086) TCGA-L5-A4OI-01 19 7534888 7534888 G A ARHGEF18 Missense_Mutation p.G1108S 0.41 tolerated(1) benign(0.001) TCGA-L5-A4OI-01 19 7595268 7595268 C T MCOLN1 Missense_Mutation p.R486C 0.41 deleterious(0) possibly_damaging(0.606) TCGA-L5-A4OI-01 19 7670318 7670318 G A CAMSAP3 Missense_Mutation p.E119K 0.43 deleterious(0.04) possibly_damaging(0.578) TCGA-L5-A4OI-01 19 7975078 7975078 C T MAP2K7 Intron 0.26 TCGA-L5-A4OI-01 19 8028035 8028035 C T ELAVL1 3'UTR 0.25 TCGA-L5-A4OI-01 19 8028566 8028566 C A ELAVL1 Missense_Mutation p.W261L 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 19 8153004 8153004 C T FBN3 Missense_Mutation p.G2146R 0.33 deleterious(0.04) possibly_damaging(0.573) TCGA-L5-A4OI-01 19 8155007 8155007 C T FBN3 Missense_Mutation p.E2054K 0.33 deleterious(0.01) probably_damaging(0.978) TCGA-L5-A4OI-01 19 8438936 8438936 G - ANGPTL4 3'UTR 0.32 TCGA-L5-A4OI-01 19 8550769 8550769 T C HNRNPM Missense_Mutation p.M486T 0.26 deleterious_low_confidence(0) possibly_damaging(0.718) TCGA-L5-A4OI-01 19 9069367 9069367 A G MUC16 Missense_Mutation p.S6027P 0.16 unknown(0) TCGA-L5-A4OI-01 19 9089043 9089043 G T MUC16 Missense_Mutation p.S924R 0.41 unknown(0) TCGA-L5-A4OI-01 19 9413157 9413157 C A ZNF699 Silent p.V24V 0.44 TCGA-L5-A4OI-01 1 100548276 100548276 T - HIAT1 3'UTR 0.24 TCGA-L5-A4OI-01 1 100660746 100660747 - T DBT 3'UTR 0.34 TCGA-L5-A4OI-01 1 100889837 100889837 C - CDC14A Frame_Shift_Del p.Y126Ifs*64 0.31 TCGA-L5-A4OI-01 1 10231262 10231262 C T UBE4B Missense_Mutation p.R1134C 0.35 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OI-01 1 103474067 103474067 C - COL11A1 Frame_Shift_Del p.P546Lfs*87 0.37 TCGA-L5-A4OI-01 1 10715751 10715751 G A CASZ1 Silent p.H540H 0.32 TCGA-L5-A4OI-01 1 109202515 109202515 G A HENMT1 5'UTR 0.26 TCGA-L5-A4OI-01 1 109315355 109315355 A - STXBP3 Frame_Shift_Del p.D171Mfs*11 0.30 TCGA-L5-A4OI-01 1 11084334 11084334 T - TARDBP 3'Flank 0.59 TCGA-L5-A4OI-01 1 1111329 1111329 G T TTLL10 Intron 0.38 TCGA-L5-A4OI-01 1 111214924 111214924 A T KCNA3 3'UTR 0.44 TCGA-L5-A4OI-01 1 11136981 11136981 G A EXOSC10 Missense_Mutation p.A635V 0.44 tolerated(0.07) benign(0.002) TCGA-L5-A4OI-01 1 112045780 112045780 A G ADORA3 Missense_Mutation p.M66T 0.32 deleterious_low_confidence(0.03) benign(0.077) TCGA-L5-A4OI-01 1 11204705 11204705 C A MTOR Missense_Mutation p.Q1624H 0.45 deleterious(0.04) probably_damaging(0.997) TCGA-L5-A4OI-01 1 112525257 112525257 G A KCND3 Missense_Mutation p.P31L 0.38 deleterious(0.04) benign(0) TCGA-L5-A4OI-01 1 112999451 112999451 G A CTTNBP2NL Missense_Mutation p.G446D 0.35 tolerated(0.16) possibly_damaging(0.619) TCGA-L5-A4OI-01 1 113661870 113661870 G A LRIG2 Missense_Mutation p.R899Q 0.39 tolerated(0.62) benign(0.129) TCGA-L5-A4OI-01 1 114515801 114515801 G A HIPK1 Silent p.P1100P 0.27 TCGA-L5-A4OI-01 1 114680475 114680475 C T SYT6 Missense_Mutation p.R153H 0.36 deleterious(0.03) benign(0.001) TCGA-L5-A4OI-01 1 1146844 1146844 G A TNFRSF4 3'UTR 0.41 TCGA-L5-A4OI-01 1 115252224 115252224 A G NRAS Missense_Mutation p.I139T 0.05 deleterious(0.03) benign(0.302) TCGA-L5-A4OI-01 1 115292534 115292534 A - CSDE1 5'UTR 0.45 TCGA-L5-A4OI-01 1 116226673 116226673 G A VANGL1 Missense_Mutation p.R352Q 0.34 deleterious(0.01) possibly_damaging(0.849) TCGA-L5-A4OI-01 1 116379303 116379303 T - NHLH2 3'Flank 0.43 TCGA-L5-A4OI-01 1 116927462 116927462 C T ATP1A1 Missense_Mutation p.R61W 0.33 deleterious(0) possibly_damaging(0.715) TCGA-L5-A4OI-01 1 116930848 116930849 - A ATP1A1 Frame_Shift_Ins p.N163Kfs*14 0.24 TCGA-L5-A4OI-01 1 11733420 11733420 A G FBXO6 Missense_Mutation p.E199G 0.30 tolerated(0.13) benign(0.309) TCGA-L5-A4OI-01 1 117661014 117661014 A G TRIM45 Silent p.I288I 0.38 TCGA-L5-A4OI-01 1 118168243 118168243 C T FAM46C 3'UTR 0.31 TCGA-L5-A4OI-01 1 118430389 118430389 G A GDAP2 Missense_Mutation p.R321C 0.30 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 1 11983512 11983512 C T KIAA2013 Silent p.T356T 0.41 TCGA-L5-A4OI-01 1 12012719 12012719 C T PLOD1 Missense_Mutation p.A169V 0.38 tolerated(0.19) benign(0.06) TCGA-L5-A4OI-01 1 12064057 12064057 G A MFN2 Missense_Mutation p.C390Y 0.22 tolerated(0.32) probably_damaging(0.993) TCGA-L5-A4OI-01 1 12387744 12387744 C T VPS13D Missense_Mutation p.A2677V 0.36 probably_damaging(0.987) TCGA-L5-A4OI-01 1 12908012 12908012 G A HNRNPCL1 Missense_Mutation p.A44V 0.09 tolerated(1) benign(0.002) TCGA-L5-A4OI-01 1 1372492 1372492 C T VWA1 Missense_Mutation p.P87S 0.33 tolerated(0.36) benign(0.021) TCGA-L5-A4OI-01 1 144520891 144520891 C T AL592284.1 3'UTR 0.83 TCGA-L5-A4OI-01 1 144598579 144598579 C T RP11-640M9.2 RNA 0.13 TCGA-L5-A4OI-01 1 145498806 145498806 T C LIX1L 3'UTR 0.48 TCGA-L5-A4OI-01 1 145532467 145532467 A G ITGA10 Missense_Mutation p.H307R 0.64 deleterious(0.01) probably_damaging(0.988) TCGA-L5-A4OI-01 1 145562534 145562534 G A ANKRD35 Missense_Mutation p.R741Q 0.46 deleterious(0.05) benign(0.441) TCGA-L5-A4OI-01 1 145562653 145562653 G T ANKRD35 Missense_Mutation p.A781S 0.42 deleterious(0.02) probably_damaging(0.995) TCGA-L5-A4OI-01 1 145704302 145704302 G A CD160 Nonsense_Mutation p.R39* 0.30 TCGA-L5-A4OI-01 1 145811901 145811901 C T GPR89A Missense_Mutation p.R103Q 0.31 tolerated(0.58) benign(0.001) TCGA-L5-A4OI-01 1 149895759 149895760 - G SF3B4 Frame_Shift_Ins p.R354Pfs*132 0.23 TCGA-L5-A4OI-01 1 149914741 149914741 A - OTUD7B 3'UTR 0.59 TCGA-L5-A4OI-01 1 1499775 1499775 C T SSU72 Intron 0.43 TCGA-L5-A4OI-01 1 150266762 150266762 A C MRPS21 5'UTR 0.26 TCGA-L5-A4OI-01 1 150483621 150483621 C T ECM1 Missense_Mutation p.R246C 0.28 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 1 150532742 150532742 C - ADAMTSL4 3'UTR 0.21 TCGA-L5-A4OI-01 1 150548903 150548904 - A MCL1 3'UTR 0.18 TCGA-L5-A4OI-01 1 151259034 151259035 TG - ZNF687 Frame_Shift_Del p.C91Sfs*5 0.20 TCGA-L5-A4OI-01 1 151375466 151375466 C T POGZ 3'UTR 0.30 TCGA-L5-A4OI-01 1 151991293 151991293 C T NBPF18P RNA 0.33 TCGA-L5-A4OI-01 1 152081168 152081168 G A TCHH Missense_Mutation p.R1509C 0.26 unknown(0) TCGA-L5-A4OI-01 1 152084242 152084242 C A TCHH Missense_Mutation p.R484M 0.31 unknown(0) TCGA-L5-A4OI-01 1 152187631 152187631 G A HRNR Silent p.R2158R 0.06 TCGA-L5-A4OI-01 1 152188128 152188128 G A HRNR Nonsense_Mutation p.R1993* 0.11 TCGA-L5-A4OI-01 1 152189041 152189041 G A HRNR Silent p.R1688R 0.12 TCGA-L5-A4OI-01 1 152192466 152192466 G A HRNR Nonsense_Mutation p.R547* 0.35 TCGA-L5-A4OI-01 1 152277634 152277634 A G FLG Missense_Mutation p.V3243A 0.24 unknown(0) TCGA-L5-A4OI-01 1 152277643 152277643 C T FLG Missense_Mutation p.R3240H 0.21 unknown(0) TCGA-L5-A4OI-01 1 152283692 152283692 T C FLG Missense_Mutation p.K1224E 0.23 benign(0.292) TCGA-L5-A4OI-01 1 152283696 152283696 C G FLG Missense_Mutation p.K1222N 0.23 benign(0.403) TCGA-L5-A4OI-01 1 152284377 152284377 G A FLG Silent p.H995H 0.24 TCGA-L5-A4OI-01 1 152484226 152484226 C - LCE5A Frame_Shift_Del p.H72Qfs*65 0.27 TCGA-L5-A4OI-01 1 152488094 152488094 G - CRCT1 Frame_Shift_Del p.G80Afs*62 0.42 TCGA-L5-A4OI-01 1 152488314 152488314 G A CRCT1 3'UTR 0.24 TCGA-L5-A4OI-01 1 152883089 152883089 G T IVL Missense_Mutation p.Q272H 0.23 deleterious(0) probably_damaging(0.986) TCGA-L5-A4OI-01 1 153085010 153085010 C T SPRR2F Missense_Mutation p.C67Y 0.04 unknown(0) TCGA-L5-A4OI-01 1 153777260 153777260 T - GATAD2B 3'UTR 0.24 TCGA-L5-A4OI-01 1 153965404 153965404 A - NUP210L Frame_Shift_Del p.F1858Lfs*11 0.26 TCGA-L5-A4OI-01 1 154296077 154296077 G T AQP10 Missense_Mutation p.G168W 0.25 tolerated(0.17) benign(0.031) TCGA-L5-A4OI-01 1 154474190 154474190 G A SHE Missense_Mutation p.R105C 0.23 deleterious(0.03) possibly_damaging(0.855) TCGA-L5-A4OI-01 1 154544175 154544175 C T CHRNB2 Silent p.L292L 0.29 TCGA-L5-A4OI-01 1 154557180 154557185 AGGAGA GGAG ADAR 3'UTR 0.20 TCGA-L5-A4OI-01 1 154932071 154932071 G - PYGO2 Frame_Shift_Del p.F136Sfs*25 0.37 TCGA-L5-A4OI-01 1 154935863 154935863 G - SHC1 3'UTR 0.24 TCGA-L5-A4OI-01 1 154987852 154987852 C T ZBTB7B Missense_Mutation p.A273V 0.27 tolerated(0.28) benign(0.003) TCGA-L5-A4OI-01 1 155032745 155032745 T C ADAM15 Silent p.L711L 0.34 TCGA-L5-A4OI-01 1 155059987 155059987 A - EFNA3 3'UTR 0.18 TCGA-L5-A4OI-01 1 155150676 155150676 C T TRIM46 Missense_Mutation p.L370F 0.30 deleterious(0) probably_damaging(0.976) TCGA-L5-A4OI-01 1 155166890 155166890 G A THBS3 Missense_Mutation p.R872W 0.19 deleterious(0) possibly_damaging(0.849) TCGA-L5-A4OI-01 1 155180357 155180357 G A MTX1 Missense_Mutation p.R206Q 0.31 tolerated(0.05) benign(0.192) TCGA-L5-A4OI-01 1 155232994 155232994 C G CLK2 3'UTR 0.23 TCGA-L5-A4OI-01 1 155287631 155287631 A - FDPS Intron 0.29 TCGA-L5-A4OI-01 1 155305880 155305880 T C ASH1L 3'UTR 0.24 TCGA-L5-A4OI-01 1 15546112 15546112 A G TMEM51 Missense_Mutation p.H212R 0.29 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 155823541 155823541 C T GON4L Missense_Mutation p.V11M 0.29 tolerated_low_confidence(0.06) possibly_damaging(0.781) TCGA-L5-A4OI-01 1 156051672 156051672 G A MEX3A Silent p.L40L 0.26 TCGA-L5-A4OI-01 1 156106205 156106205 G A LMNA Missense_Mutation p.R453Q 0.06 tolerated(0.19) benign(0.112) TCGA-L5-A4OI-01 1 156220270 156220270 C T SMG5 3'UTR 0.26 TCGA-L5-A4OI-01 1 156552852 156552852 G A TTC24 Nonsense_Mutation p.W310* 0.36 TCGA-L5-A4OI-01 1 156571203 156571203 T C GPATCH4 Missense_Mutation p.D10G 0.35 tolerated_low_confidence(0.28) benign(0.009) TCGA-L5-A4OI-01 1 156761489 156761489 G A PRCC Missense_Mutation p.D362N 0.04 tolerated(0.07) possibly_damaging(0.72) TCGA-L5-A4OI-01 1 156904838 156904838 G C ARHGEF11 3'UTR 0.16 TCGA-L5-A4OI-01 1 157094756 157094756 G - ETV3 Frame_Shift_Del p.K473Sfs*4 0.27 TCGA-L5-A4OI-01 1 157660325 157660325 T C FCRL3 Splice_Site p.X471_splice 0.35 TCGA-L5-A4OI-01 1 157666846 157666846 C T FCRL3 Intron 0.22 TCGA-L5-A4OI-01 1 157805866 157805866 C A CD5L Missense_Mutation p.W45C 0.31 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 1 158054356 158054356 C T KIRREL Missense_Mutation p.A166V 0.22 deleterious(0) possibly_damaging(0.685) TCGA-L5-A4OI-01 1 158064153 158064153 C T KIRREL Silent p.I590I 0.30 TCGA-L5-A4OI-01 1 158623217 158623217 T C SPTA1 Splice_Site p.X1013_splice 0.38 TCGA-L5-A4OI-01 1 158656416 158656416 C T SPTA1 5'UTR 0.26 TCGA-L5-A4OI-01 1 15895341 15895341 A G DNAJC16 3'UTR 0.46 TCGA-L5-A4OI-01 1 159410055 159410055 G A OR10J1 Silent p.T169T 0.26 TCGA-L5-A4OI-01 1 159863013 159863013 G A CCDC19 Missense_Mutation p.A29V 0.34 tolerated(0.05) probably_damaging(0.987) TCGA-L5-A4OI-01 1 159899747 159899747 G A IGSF9 Missense_Mutation p.R695C 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 1 160011042 160011042 C T KCNJ10 3'UTR 0.33 TCGA-L5-A4OI-01 1 160011799 160011799 C T KCNJ10 Missense_Mutation p.R175Q 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 1 160109526 160109526 G A ATP1A2 Silent p.P979P 0.30 TCGA-L5-A4OI-01 1 160125039 160125039 G A ATP1A4 Splice_Site p.X137_splice 0.32 TCGA-L5-A4OI-01 1 160136824 160136824 G A ATP1A4 Missense_Mutation p.R438Q 0.31 deleterious(0) benign(0.036) TCGA-L5-A4OI-01 1 160184758 160184758 G A PEA15 3'UTR 0.29 TCGA-L5-A4OI-01 1 160209917 160209917 C T DCAF8 Missense_Mutation p.R98H 0.30 tolerated(0.37) benign(0.001) TCGA-L5-A4OI-01 1 160261861 160261861 G A COPA Missense_Mutation p.R1039C 0.27 deleterious(0) probably_damaging(0.985) TCGA-L5-A4OI-01 1 160398423 160398423 A - VANGL2 3'UTR 0.19 TCGA-L5-A4OI-01 1 16053915 16053915 C T PLEKHM2 Missense_Mutation p.P450S 0.39 tolerated_low_confidence(0.37) benign(0.007) TCGA-L5-A4OI-01 1 161087855 161087855 C T PFDN2 5'UTR 0.33 TCGA-L5-A4OI-01 1 161135370 161135370 T - USP21 3'UTR 0.39 TCGA-L5-A4OI-01 1 161160313 161160328 AAGAAAGAAAGAAAGA GAAAGAAAGAAAG ADAMTS4 3'UTR 0.12 TCGA-L5-A4OI-01 1 161594337 161594337 C T FCGR3B Missense_Mutation p.G260R 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-L5-A4OI-01 1 161953561 161953561 G T OLFML2B Silent p.S719S 0.30 TCGA-L5-A4OI-01 1 16266428 16266428 T - SPEN 3'UTR 0.22 TCGA-L5-A4OI-01 1 162748376 162748376 T C DDR2 Missense_Mutation p.F764L 0.22 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 164529145 164529145 G T PBX1 Missense_Mutation p.G29V 0.27 deleterious_low_confidence(0.03) benign(0.375) TCGA-L5-A4OI-01 1 165414181 165414181 G A RXRG 5'UTR 0.30 TCGA-L5-A4OI-01 1 166826910 166826910 A G TADA1 Missense_Mutation p.I301T 0.17 tolerated(0.18) benign(0.004) TCGA-L5-A4OI-01 1 167653202 167653202 C T RCSD1 Silent p.A24A 0.19 TCGA-L5-A4OI-01 1 167654702 167654702 C - RCSD1 Frame_Shift_Del p.L53Cfs*6 0.27 TCGA-L5-A4OI-01 1 168032896 168032896 C T DCAF6 Missense_Mutation p.R780W 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 16809912 16809912 C T CROCCP3 RNA 0.31 TCGA-L5-A4OI-01 1 168510294 168510294 C T XCL2 Missense_Mutation p.V81I 0.30 tolerated(0.86) benign(0.045) TCGA-L5-A4OI-01 1 1688163 1688163 C - NADK Intron 0.38 TCGA-L5-A4OI-01 1 16955030 16955030 G A CROCCP2 3'Flank 0.10 TCGA-L5-A4OI-01 1 169762095 169762095 C A METTL18 Missense_Mutation p.D248Y 0.18 deleterious(0.03) possibly_damaging(0.879) TCGA-L5-A4OI-01 1 169821919 169821919 T - SCYL3 3'UTR 0.24 TCGA-L5-A4OI-01 1 169836093 169836093 C A SCYL3 Silent p.V253V 0.15 TCGA-L5-A4OI-01 1 171514769 171514769 A - PRRC2C Frame_Shift_Del p.K1638Nfs*22 0.20 TCGA-L5-A4OI-01 1 1720538 1720538 G A GNB1 Silent p.D290D 0.30 TCGA-L5-A4OI-01 1 172410734 172410734 T - PIGC 3'UTR 0.26 TCGA-L5-A4OI-01 1 17248507 17248507 C - CROCC 5'UTR 0.43 TCGA-L5-A4OI-01 1 172554204 172554204 A - SUCO Frame_Shift_Del p.T517Lfs*4 0.23 TCGA-L5-A4OI-01 1 172580461 172580461 T - SUCO 3'UTR 0.26 TCGA-L5-A4OI-01 1 17285242 17285242 G T CROCC Missense_Mutation p.Q1343H 0.38 possibly_damaging(0.905) TCGA-L5-A4OI-01 1 17297165 17297165 C T CROCC Missense_Mutation p.T1896I 0.48 possibly_damaging(0.702) TCGA-L5-A4OI-01 1 17316763 17316763 C T ATP13A2 Silent p.A757A 0.39 TCGA-L5-A4OI-01 1 173743555 173743555 C T KLHL20 Silent p.D469D 0.28 TCGA-L5-A4OI-01 1 173907542 173907542 T - RC3H1 3'UTR 0.67 TCGA-L5-A4OI-01 1 175293628 175293628 C T TNR Missense_Mutation p.R1274H 0.22 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OI-01 1 176708821 176708821 C T PAPPA2 Silent p.G1286G 0.29 TCGA-L5-A4OI-01 1 176833508 176833508 G A ASTN1 Missense_Mutation p.A1266V 0.30 tolerated_low_confidence(0.51) benign(0.002) TCGA-L5-A4OI-01 1 17734199 17734200 - T RCC2 3'UTR 0.10 TCGA-L5-A4OI-01 1 17734234 17734234 T A RCC2 3'UTR 0.11 TCGA-L5-A4OI-01 1 179363073 179363073 G A AXDND1 Missense_Mutation p.R300Q 0.38 tolerated(0.45) possibly_damaging(0.857) TCGA-L5-A4OI-01 1 179620102 179620102 T - TDRD5 Frame_Shift_Del p.L636Cfs*16 0.24 TCGA-L5-A4OI-01 1 179783147 179783147 G A FAM163A Silent p.T109T 0.37 TCGA-L5-A4OI-01 1 179993623 179993623 T C CEP350 Silent p.V1152V 0.20 TCGA-L5-A4OI-01 1 180243372 180243372 G - LHX4 Frame_Shift_Del p.D279Tfs*7 0.25 TCGA-L5-A4OI-01 1 180885573 180885574 - C KIAA1614 Frame_Shift_Ins p.K114Qfs*36 0.25 TCGA-L5-A4OI-01 1 181687262 181687262 C T CACNA1E Missense_Mutation p.R533C 0.11 deleterious(0) possibly_damaging(0.898) TCGA-L5-A4OI-01 1 181726119 181726119 C T CACNA1E Missense_Mutation p.R1396C 0.31 deleterious(0) possibly_damaging(0.898) TCGA-L5-A4OI-01 1 182440500 182440500 T C RGSL1 Intron 0.28 TCGA-L5-A4OI-01 1 183196723 183196723 G A LAMC2 Silent p.P453P 0.23 TCGA-L5-A4OI-01 1 183515417 183515417 G A SMG7 Missense_Mutation p.R850Q 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.756) TCGA-L5-A4OI-01 1 186083133 186083133 C - HMCN1 Frame_Shift_Del p.Q3720Rfs*4 0.24 TCGA-L5-A4OI-01 1 18809847 18809847 C T KLHDC7A 3'UTR 0.39 TCGA-L5-A4OI-01 1 19199403 19199403 G A ALDH4A1 Missense_Mutation p.S543L 0.35 deleterious(0) possibly_damaging(0.904) TCGA-L5-A4OI-01 1 193105631 193105631 G A CDC73 Intron 0.21 TCGA-L5-A4OI-01 1 1961475 1961475 G A GABRD Silent p.T371T 0.10 TCGA-L5-A4OI-01 1 197073232 197073232 T - ASPM Frame_Shift_Del p.I1717* 0.21 TCGA-L5-A4OI-01 1 197123325 197123325 A - ZBTB41 3'UTR 0.18 TCGA-L5-A4OI-01 1 197127004 197127042 TCACAAGGGCTGGGCTAGACTTTACAGTTTACACACACA CACAAGGGCTGGGCTAGACTTTACAGTTTACACACAC ZBTB41 3'UTR 0.11 TCGA-L5-A4OI-01 1 200586843 200586843 C T KIF14 Missense_Mutation p.E337K 0.25 tolerated(0.51) benign(0.011) TCGA-L5-A4OI-01 1 200619669 200619669 G A DDX59 Missense_Mutation p.H400Y 0.30 deleterious(0.01) benign(0.304) TCGA-L5-A4OI-01 1 200954050 200954050 C T KIF21B Missense_Mutation p.R1247H 0.30 deleterious(0.03) benign(0.439) TCGA-L5-A4OI-01 1 200956173 200956173 G A KIF21B Missense_Mutation p.R1189W 0.25 deleterious(0.01) possibly_damaging(0.619) TCGA-L5-A4OI-01 1 201052298 201052298 C T CACNA1S Missense_Mutation p.R462H 0.23 tolerated(0.78) benign(0.001) TCGA-L5-A4OI-01 1 201355590 201355590 C - LAD1 Frame_Shift_Del p.G300Efs*44 0.28 TCGA-L5-A4OI-01 1 201434686 201434686 C - PHLDA3 3'UTR 0.26 TCGA-L5-A4OI-01 1 202287187 202287187 G A LGR6 Missense_Mutation p.V586M 0.20 deleterious(0.05) benign(0.305) TCGA-L5-A4OI-01 1 203689833 203689833 G A ATP2B4 Missense_Mutation p.V855M 0.28 deleterious(0.01) possibly_damaging(0.63) TCGA-L5-A4OI-01 1 204124148 204124148 C T REN Missense_Mutation p.R406H 0.27 deleterious(0.03) benign(0.044) TCGA-L5-A4OI-01 1 204188369 204188369 G A PLEKHA6 3'UTR 0.48 TCGA-L5-A4OI-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.27 TCGA-L5-A4OI-01 1 204392733 204392733 A - PIK3C2B 3'UTR 0.34 TCGA-L5-A4OI-01 1 205031075 205031075 C T CNTN2 Silent p.G352G 0.20 TCGA-L5-A4OI-01 1 205056865 205056865 A - RBBP5 3'UTR 0.46 TCGA-L5-A4OI-01 1 205117339 205117339 G A DSTYK Missense_Mutation p.R866W 0.18 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OI-01 1 205273406 205273406 G T NUAK2 Missense_Mutation p.F353L 0.14 tolerated(0.77) probably_damaging(0.993) TCGA-L5-A4OI-01 1 205501330 205501330 T G CDK18 3'Flank 0.21 TCGA-L5-A4OI-01 1 206765123 206765123 G A EIF2D Missense_Mutation p.P580L 0.21 tolerated(0.5) benign(0.341) TCGA-L5-A4OI-01 1 207010076 207010076 C T IL19 Silent p.H61H 0.28 TCGA-L5-A4OI-01 1 207131832 207131832 G A FCAMR 3'UTR 0.30 TCGA-L5-A4OI-01 1 207268778 207268778 C T C4BPB Intron 0.23 TCGA-L5-A4OI-01 1 207642015 207642018 TGTT - CR2 Frame_Shift_Del p.S199Rfs*19 0.28 TCGA-L5-A4OI-01 1 207930454 207930454 A - CD46 Frame_Shift_Del p.G67Dfs*40 0.18 TCGA-L5-A4OI-01 1 207934699 207934699 C T CD46 Missense_Mutation p.A194V 0.31 tolerated(0.29) benign(0.012) TCGA-L5-A4OI-01 1 207975272 207975272 C A C1orf132 RNA 0.36 TCGA-L5-A4OI-01 1 20975711 20975711 G A PINK1 Missense_Mutation p.R492Q 0.27 deleterious(0) probably_damaging(0.987) TCGA-L5-A4OI-01 1 20976948 20976948 G A PINK1 Missense_Mutation p.A504T 0.37 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 1 210006627 210006627 C T DIEXF Silent p.H162H 0.31 TCGA-L5-A4OI-01 1 210416117 210416117 T - SERTAD4 3'UTR 0.23 TCGA-L5-A4OI-01 1 210948724 210948724 C T KCNH1 Missense_Mutation p.R693Q 0.36 deleterious(0.02) benign(0.44) TCGA-L5-A4OI-01 1 21106855 21106855 C T HP1BP3 Missense_Mutation p.A27T 0.40 tolerated_low_confidence(0.12) benign(0) TCGA-L5-A4OI-01 1 211545734 211545734 G - TRAF5 Frame_Shift_Del p.S457Hfs*26 0.32 TCGA-L5-A4OI-01 1 2116003 2116005 CTC - C1orf86 3'Flank 0.38 TCGA-L5-A4OI-01 1 2116115 2116115 G A PRKCZ Missense_Mutation p.V557M 0.44 deleterious(0) probably_damaging(0.954) TCGA-L5-A4OI-01 1 2117679 2117679 C T C1orf86 3'Flank 0.33 TCGA-L5-A4OI-01 1 211847831 211847831 A G NEK2 Missense_Mutation p.Y41H 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 1 211923183 211923183 A G LPGAT1 3'UTR 0.36 TCGA-L5-A4OI-01 1 212254045 212254045 C T DTL Missense_Mutation p.T405M 0.19 deleterious(0.05) benign(0.001) TCGA-L5-A4OI-01 1 212798457 212798457 C A FAM71A Missense_Mutation p.L80I 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A4OI-01 1 213032353 213032353 G A FLVCR1 Missense_Mutation p.G187S 0.23 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 213405564 213405564 G T RPS6KC1 Missense_Mutation p.E397D 0.27 tolerated(0.09) benign(0.044) TCGA-L5-A4OI-01 1 214560191 214560191 C T PTPN14 Silent p.S354S 0.14 TCGA-L5-A4OI-01 1 21554464 21554464 C T ECE1 Missense_Mutation p.G581R 0.31 deleterious(0) probably_damaging(0.988) TCGA-L5-A4OI-01 1 21586835 21586835 A G ECE1 Missense_Mutation p.Y182H 0.12 deleterious(0) probably_damaging(0.975) TCGA-L5-A4OI-01 1 21904827 21904827 T - ALPL 3'UTR 0.36 TCGA-L5-A4OI-01 1 220837109 220837133 TGCCTTAGCAAAGGGTGGTGTTTGA GCCTTAGCAAAGGGTGGTGTTTG MARK1 3'Flank 0.16 TCGA-L5-A4OI-01 1 220969991 220969991 C T MARC1 Silent p.H152H 0.25 TCGA-L5-A4OI-01 1 22149323 22149323 T - LDLRAD2 3'UTR 0.33 TCGA-L5-A4OI-01 1 22168102 22168102 G A HSPG2 Silent p.H3086H 0.34 TCGA-L5-A4OI-01 1 222801059 222801059 A - MIA3 Frame_Shift_Del p.N168Tfs*15 0.12 TCGA-L5-A4OI-01 1 223408392 223408392 A T SUSD4 Intron 0.27 TCGA-L5-A4OI-01 1 2238895 2238895 C T SKI 3'UTR 0.67 TCGA-L5-A4OI-01 1 223900341 223900341 G T CAPN2 5'UTR 0.29 TCGA-L5-A4OI-01 1 2239003 2239003 C T SKI 3'UTR 0.35 TCGA-L5-A4OI-01 1 225230734 225230735 - A DNAH14 Frame_Shift_Ins p.H584Tfs*4 0.28 TCGA-L5-A4OI-01 1 226789775 226789775 C G C1orf95 3'UTR 0.18 TCGA-L5-A4OI-01 1 227172972 227172972 C T ADCK3 Silent p.A530A 0.27 TCGA-L5-A4OI-01 1 227174166 227174166 G A ADCK3 Missense_Mutation p.A558T 0.19 deleterious(0.01) possibly_damaging(0.84) TCGA-L5-A4OI-01 1 227219077 227219077 G A CDC42BPA Missense_Mutation p.R1198C 0.20 deleterious(0.01) probably_damaging(0.954) TCGA-L5-A4OI-01 1 227618299 227618299 A - CTD-2090I13.1 RNA 0.30 TCGA-L5-A4OI-01 1 227935790 227935790 G - SNAP47 Frame_Shift_Del p.G164Afs*4 0.16 TCGA-L5-A4OI-01 1 228402129 228402129 G A OBSCN Missense_Mutation p.V505M 0.21 probably_damaging(1) TCGA-L5-A4OI-01 1 228552687 228552687 C - OBSCN Frame_Shift_Del p.P7241Rfs*78 0.24 TCGA-L5-A4OI-01 1 228560743 228560743 G A OBSCN Missense_Mutation p.V8379M 0.32 possibly_damaging(0.891) TCGA-L5-A4OI-01 1 228582583 228582583 G A TRIM11 Silent p.Y410Y 0.28 TCGA-L5-A4OI-01 1 229460198 229460198 A - CCSAP 3'UTR 0.28 TCGA-L5-A4OI-01 1 229460857 229460857 A - CCSAP 3'UTR 0.35 TCGA-L5-A4OI-01 1 229737923 229737923 A - TAF5L Intron 0.21 TCGA-L5-A4OI-01 1 231299574 231299574 G A TRIM67 Missense_Mutation p.A287T 0.50 tolerated(0.57) benign(0.018) TCGA-L5-A4OI-01 1 231858326 231858326 T C DISC1 Intron 0.24 TCGA-L5-A4OI-01 1 2318863 2318863 C T MORN1 Missense_Mutation p.R118Q 0.46 deleterious(0.04) possibly_damaging(0.74) TCGA-L5-A4OI-01 1 232172585 232172585 C T DISC1 3'UTR 0.36 TCGA-L5-A4OI-01 1 23239995 23239995 A - EPHB2 Frame_Shift_Del p.I968Sfs*2 0.40 TCGA-L5-A4OI-01 1 233134043 233134043 G A PCNXL2 Silent p.G1915G 0.55 TCGA-L5-A4OI-01 1 233518831 233518831 T - MLK4 3'UTR 0.31 TCGA-L5-A4OI-01 1 234529164 234529164 C T TARBP1 Missense_Mutation p.D1502N 0.34 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 1 235914600 235914600 C T LYST Missense_Mutation p.A2564T 0.44 deleterious(0.02) probably_damaging(0.993) TCGA-L5-A4OI-01 1 236415381 236415381 G A ERO1LB Missense_Mutation p.P106L 0.41 deleterious(0.01) benign(0.262) TCGA-L5-A4OI-01 1 237711849 237711849 C T RYR2 Missense_Mutation p.R1009W 0.51 probably_damaging(0.996) TCGA-L5-A4OI-01 1 238090646 238090646 C A RP11-193H5.1 RNA 0.31 TCGA-L5-A4OI-01 1 240071991 240071991 G A CHRM3 Missense_Mutation p.V414M 0.45 tolerated(0.14) benign(0.006) TCGA-L5-A4OI-01 1 240072235 240072235 C T CHRM3 Missense_Mutation p.A495V 0.45 deleterious(0) probably_damaging(0.979) TCGA-L5-A4OI-01 1 240072444 240072444 A - CHRM3 Frame_Shift_Del p.K567Rfs*31 0.53 TCGA-L5-A4OI-01 1 240370225 240370225 G T FMN2 Missense_Mutation p.A705S 0.26 unknown(0) TCGA-L5-A4OI-01 1 240653778 240653778 G A GREM2 3'UTR 0.31 TCGA-L5-A4OI-01 1 240939181 240939181 A G RGS7 3'UTR 0.62 TCGA-L5-A4OI-01 1 2450662 2450662 C T PANK4 Missense_Mutation p.V319M 0.48 deleterious(0) possibly_damaging(0.875) TCGA-L5-A4OI-01 1 245849621 245849621 C T KIF26B Silent p.G1112G 0.14 TCGA-L5-A4OI-01 1 246923522 246923522 A - SCCPDH Frame_Shift_Del p.K329Nfs*10 0.18 TCGA-L5-A4OI-01 1 247003631 247003631 A - AHCTF1 3'UTR 0.22 TCGA-L5-A4OI-01 1 247464137 247464137 C T ZNF496 Missense_Mutation p.R483Q 0.24 deleterious(0) probably_damaging(0.944) TCGA-L5-A4OI-01 1 248224643 248224643 T C OR2L3 Silent p.V220V 0.15 TCGA-L5-A4OI-01 1 248436945 248436945 A G OR2T33 Missense_Mutation p.Y58H 0.23 deleterious(0) probably_damaging(0.968) TCGA-L5-A4OI-01 1 2489215 2489215 G A TNFRSF14 Silent p.P40P 0.40 TCGA-L5-A4OI-01 1 249142523 249142523 C T ZNF672 Silent p.C350C 0.25 TCGA-L5-A4OI-01 1 249212111 249212111 C T PGBD2 Missense_Mutation p.T443M 0.20 tolerated(0.1) benign(0.017) TCGA-L5-A4OI-01 1 25124245 25124245 G T CLIC4 Missense_Mutation p.G29C 0.40 deleterious(0) possibly_damaging(0.648) TCGA-L5-A4OI-01 1 25667024 25667024 G - TMEM50A Frame_Shift_Del p.E18Kfs*23 0.30 TCGA-L5-A4OI-01 1 25687244 25687244 T - TMEM50A 3'UTR 0.26 TCGA-L5-A4OI-01 1 26143253 26143253 T - SEPN1 3'UTR 0.24 TCGA-L5-A4OI-01 1 26514778 26514778 C - CNKSR1 Frame_Shift_Del p.P505Hfs*58 0.29 TCGA-L5-A4OI-01 1 26648510 26648510 C A AIM1L Missense_Mutation p.W771C 0.43 tolerated(0.19) probably_damaging(1) TCGA-L5-A4OI-01 1 27099461 27099462 - TG ARID1A Frame_Shift_Ins p.G1234Vfs*4 0.28 TCGA-L5-A4OI-01 1 27190857 27190857 C T SFN 3'UTR 0.53 TCGA-L5-A4OI-01 1 27633122 27633122 C - WDTC1 3'UTR 0.81 TCGA-L5-A4OI-01 1 27677345 27677345 G A SYTL1 Missense_Mutation p.E356K 0.45 deleterious(0.01) probably_damaging(0.993) TCGA-L5-A4OI-01 1 27684951 27684951 C T MAP3K6 Missense_Mutation p.S912N 0.39 tolerated(0.35) possibly_damaging(0.526) TCGA-L5-A4OI-01 1 27742509 27742509 C A WASF2 Missense_Mutation p.K169N 0.33 deleterious(0.01) unknown(0) TCGA-L5-A4OI-01 1 28208867 28208867 C T THEMIS2 Silent p.G344G 0.36 TCGA-L5-A4OI-01 1 29447499 29447499 C T TMEM200B Missense_Mutation p.R281Q 0.17 deleterious(0) benign(0.342) TCGA-L5-A4OI-01 1 29586017 29586017 G A PTPRU Missense_Mutation p.A206T 0.39 deleterious(0.04) benign(0.362) TCGA-L5-A4OI-01 1 2979350 2979350 G T LINC00982 RNA 0.48 TCGA-L5-A4OI-01 1 2984123 2984123 G T PRDM16 5'Flank 0.69 TCGA-L5-A4OI-01 1 31426782 31426782 G A PUM1 Silent p.G790G 0.48 TCGA-L5-A4OI-01 1 32200983 32200984 GA - BAI2 Intron 0.38 TCGA-L5-A4OI-01 1 32201935 32201935 C T BAI2 Missense_Mutation p.G1063S 0.59 tolerated(0.21) probably_damaging(1) TCGA-L5-A4OI-01 1 32221807 32221807 C T BAI2 Missense_Mutation p.A211T 0.40 tolerated(0.76) benign(0.025) TCGA-L5-A4OI-01 1 33322287 33322287 G - S100PBP 3'UTR 0.32 TCGA-L5-A4OI-01 1 34011768 34011768 C T CSMD2 Missense_Mutation p.R2846H 0.28 deleterious(0.03) benign(0.135) TCGA-L5-A4OI-01 1 3417208 3417208 C T MEGF6 Missense_Mutation p.R899Q 0.34 tolerated(0.26) benign(0.013) TCGA-L5-A4OI-01 1 34190222 34190222 C T CSMD2 Missense_Mutation p.A887T 0.36 deleterious(0.04) possibly_damaging(0.884) TCGA-L5-A4OI-01 1 35226735 35226735 G A GJB4 5'UTR 0.27 TCGA-L5-A4OI-01 1 35251228 35251228 C T GJB3 3'UTR 0.50 TCGA-L5-A4OI-01 1 3548109 3548109 C T WRAP73 Silent p.R387R 0.20 TCGA-L5-A4OI-01 1 35485090 35485090 T - ZMYM6 Frame_Shift_Del p.M98Cfs*49 0.35 TCGA-L5-A4OI-01 1 35650014 35650015 - A SFPQ 3'UTR 0.32 TCGA-L5-A4OI-01 1 3599692 3599692 C T TP73 Missense_Mutation p.T45M 0.36 deleterious(0) possibly_damaging(0.587) TCGA-L5-A4OI-01 1 36031347 36031347 C - NCDN 3'UTR 0.44 TCGA-L5-A4OI-01 1 36938156 36938156 G A CSF3R Missense_Mutation p.R269C 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 1 37316015 37316015 C A GRIK3 Missense_Mutation p.W408L 0.40 deleterious(0) possibly_damaging(0.878) TCGA-L5-A4OI-01 1 3782236 3782236 C A DFFB Intron 0.43 TCGA-L5-A4OI-01 1 37967411 37967411 C T MEAF6 Missense_Mutation p.R176Q 0.38 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-L5-A4OI-01 1 38002923 38002923 G A SNIP1 3'UTR 0.10 TCGA-L5-A4OI-01 1 3800332 3800332 G A DFFB 3'UTR 0.47 TCGA-L5-A4OI-01 1 38032370 38032370 G T DNALI1 3'UTR 0.14 TCGA-L5-A4OI-01 1 38219906 38219906 C T EPHA10 Silent p.P329P 0.41 TCGA-L5-A4OI-01 1 38355359 38355359 G A INPP5B Missense_Mutation p.R223C 0.40 deleterious(0) probably_damaging(0.95) TCGA-L5-A4OI-01 1 38510120 38510120 G A POU3F1 3'UTR 0.50 TCGA-L5-A4OI-01 1 40148347 40148347 G A HPCAL4 Missense_Mutation p.T146M 0.42 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OI-01 1 40717178 40717178 C T TMCO2 Missense_Mutation p.T154M 0.31 tolerated_low_confidence(0.41) probably_damaging(0.968) TCGA-L5-A4OI-01 1 40723877 40723877 G A ZMPSTE24 5'UTR 0.38 TCGA-L5-A4OI-01 1 42048989 42048989 G A HIVEP3 Missense_Mutation p.R494C 0.11 possibly_damaging(0.863) TCGA-L5-A4OI-01 1 42049670 42049670 G A HIVEP3 Missense_Mutation p.R267W 0.39 probably_damaging(0.994) TCGA-L5-A4OI-01 1 43772910 43772910 C - TIE1 Frame_Shift_Del p.P248Lfs*117 0.33 TCGA-L5-A4OI-01 1 43906230 43906230 G A SZT2 Silent p.A2382A 0.42 TCGA-L5-A4OI-01 1 43909268 43909268 C T SZT2 Missense_Mutation p.R2819W 0.53 tolerated(0.15) probably_damaging(0.985) TCGA-L5-A4OI-01 1 44435689 44435689 A G DPH2 5'UTR 0.46 TCGA-L5-A4OI-01 1 44595030 44595030 C T KLF17 Silent p.N29N 0.33 TCGA-L5-A4OI-01 1 45793177 45793177 C T HPDL Silent p.A119A 0.21 TCGA-L5-A4OI-01 1 46658080 46658080 G A POMGNT1 Missense_Mutation p.A438V 0.36 possibly_damaging(0.524) TCGA-L5-A4OI-01 1 46871294 46871294 G A FAAH Missense_Mutation p.V205M 0.43 tolerated(0.06) benign(0.013) TCGA-L5-A4OI-01 1 47534379 47534379 C T CYP4Z1 Missense_Mutation p.T88M 0.40 tolerated(0.24) benign(0.239) TCGA-L5-A4OI-01 1 47746485 47746485 C T STIL Missense_Mutation p.E549K 0.36 tolerated(0.2) benign(0.012) TCGA-L5-A4OI-01 1 48690428 48690428 C T SLC5A9 Silent p.G65G 0.39 TCGA-L5-A4OI-01 1 49119009 49119009 C A AGBL4 Missense_Mutation p.R280M 0.31 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 51613179 51613179 A - C1orf185 Frame_Shift_Del p.N114Ifs*20 0.34 TCGA-L5-A4OI-01 1 51761818 51761818 C T TTC39A Missense_Mutation p.A364T 0.39 deleterious(0) probably_damaging(0.956) TCGA-L5-A4OI-01 1 52257299 52257299 C T NRD1 Missense_Mutation p.G1039R 0.39 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 52530571 52530571 A - BTF3L4 Frame_Shift_Del p.K45Nfs*4 0.30 TCGA-L5-A4OI-01 1 53322739 53322739 A - ZYG11A Frame_Shift_Del p.A111Lfs*9 0.26 TCGA-L5-A4OI-01 1 53990500 53990500 G A GLIS1 Missense_Mutation p.R340C 0.31 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 54606938 54606938 G A CDCP2 Missense_Mutation p.T199I 0.36 tolerated(0.11) benign(0.296) TCGA-L5-A4OI-01 1 54692427 54692427 A - SSBP3 3'UTR 0.37 TCGA-L5-A4OI-01 1 55081757 55081757 G - FAM151A Frame_Shift_Del p.T118Lfs*43 0.36 TCGA-L5-A4OI-01 1 55252654 55252654 G A TTC22 Silent p.T278T 0.52 TCGA-L5-A4OI-01 1 55521773 55521773 C T PCSK9 Missense_Mutation p.R303C 0.28 deleterious(0.02) possibly_damaging(0.743) TCGA-L5-A4OI-01 1 56961209 56961209 T C PPAP2B 3'UTR 0.40 TCGA-L5-A4OI-01 1 57378146 57378146 G A C8A Missense_Mutation p.R484H 0.48 tolerated(0.09) benign(0.052) TCGA-L5-A4OI-01 1 57378168 57378168 G A C8A Silent p.L491L 0.48 TCGA-L5-A4OI-01 1 5925296 5925296 C T NPHP4 Missense_Mutation p.V1228I 0.35 tolerated(0.53) benign(0.036) TCGA-L5-A4OI-01 1 6111717 6111717 C T KCNAB2 Missense_Mutation p.R41W 0.44 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-L5-A4OI-01 1 61543223 61543223 A - NFIA 5'Flank 0.29 TCGA-L5-A4OI-01 1 6162321 6162336 ATCTGAAAATTAAAGA TCTGAAAATTAAAG CHD5 3'UTR 0.31 TCGA-L5-A4OI-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.36 TCGA-L5-A4OI-01 1 63836654 63836654 G T ALG6 Missense_Mutation p.E2D 0.41 tolerated(0.14) benign(0.019) TCGA-L5-A4OI-01 1 64125745 64125745 C - PGM1 3'UTR 0.35 TCGA-L5-A4OI-01 1 6683770 6683770 C T PHF13 3'UTR 0.35 TCGA-L5-A4OI-01 1 66838073 66838073 T G PDE4B Missense_Mutation p.I641M 0.44 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 6696231 6696231 C T DNAJC11 Missense_Mutation p.V534I 0.11 tolerated(0.4) benign(0.066) TCGA-L5-A4OI-01 1 67209422 67209422 T - SGIP1 3'UTR 0.32 TCGA-L5-A4OI-01 1 71869850 71869850 T A NEGR1 3'UTR 0.32 TCGA-L5-A4OI-01 1 74549888 74549889 - T LRRIQ3 Intron 0.32 TCGA-L5-A4OI-01 1 76288248 76288248 T - MSH4 Frame_Shift_Del p.F383Lfs*20 0.21 TCGA-L5-A4OI-01 1 7723499 7723499 G A CAMTA1 Missense_Mutation p.G298R 0.36 deleterious(0.01) possibly_damaging(0.734) TCGA-L5-A4OI-01 1 77620074 77620074 A - PIGK Intron 0.34 TCGA-L5-A4OI-01 1 7826976 7826976 A - CAMTA1 3'UTR 0.37 TCGA-L5-A4OI-01 1 7827415 7827415 T - CAMTA1 3'UTR 0.29 TCGA-L5-A4OI-01 1 7840444 7840444 C T VAMP3 3'UTR 0.30 TCGA-L5-A4OI-01 1 78444659 78444659 G - FUBP1 Frame_Shift_Del p.S11Lfs*43 0.31 TCGA-L5-A4OI-01 1 7887253 7887253 C T PER3 Missense_Mutation p.P747L 0.50 tolerated(0.21) probably_damaging(0.913) TCGA-L5-A4OI-01 1 7904093 7904094 - T PER3 3'UTR 0.38 TCGA-L5-A4OI-01 1 79115897 79115897 G A IFI44 Missense_Mutation p.R6H 0.41 deleterious(0.02) benign(0.123) TCGA-L5-A4OI-01 1 79129487 79129487 A - IFI44 Frame_Shift_Del p.K444Nfs*17 0.30 TCGA-L5-A4OI-01 1 85020568 85020568 T - CTBS 3'UTR 0.52 TCGA-L5-A4OI-01 1 87574620 87574620 T - HS2ST1 3'UTR 0.78 TCGA-L5-A4OI-01 1 8927293 8927293 G A ENO1 Silent p.N109N 0.37 TCGA-L5-A4OI-01 1 89300942 89300942 G A PKN2 3'UTR 0.45 TCGA-L5-A4OI-01 1 90399253 90399253 C T LRRC8D Missense_Mutation p.T209M 0.28 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 91381146 91381146 T A ZNF644 3'UTR 0.35 TCGA-L5-A4OI-01 1 94354179 94354179 T - GCLM 3'UTR 0.50 TCGA-L5-A4OI-01 1 9670669 9670669 G A TMEM201 Missense_Mutation p.R524H 0.44 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 1 998558 998558 G - RP11-54O7.18 RNA 0.37 TCGA-L5-A4OI-01 20 13269234 13269234 G A ISM1 Missense_Mutation p.V231I 0.37 tolerated(0.3) benign(0.099) TCGA-L5-A4OI-01 20 13279856 13279856 C T ISM1 Missense_Mutation p.A382V 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OI-01 20 13894524 13894524 G A SEL1L2 Silent p.D151D 0.33 TCGA-L5-A4OI-01 20 19981678 19981678 C T RIN2 3'UTR 0.44 TCGA-L5-A4OI-01 20 20147072 20147073 - T C20orf26 Frame_Shift_Ins p.S415Ffs*2 0.37 TCGA-L5-A4OI-01 20 20582381 20582381 C T RALGAPA2 Silent p.T716T 0.45 TCGA-L5-A4OI-01 20 23060886 23060886 T - CD93 3'UTR 0.33 TCGA-L5-A4OI-01 20 23065105 23065105 G T CD93 Silent p.G575G 0.28 TCGA-L5-A4OI-01 20 23360531 23360531 A C NAPB Silent p.T236T 0.21 TCGA-L5-A4OI-01 20 2443078 2443078 C A SNRPB Intron 0.48 TCGA-L5-A4OI-01 20 24523688 24523688 A G SYNDIG1 5'UTR 0.51 TCGA-L5-A4OI-01 20 24523996 24523996 G A SYNDIG1 Missense_Mutation p.R88Q 0.50 tolerated(0.13) possibly_damaging(0.527) TCGA-L5-A4OI-01 20 280056 280056 G A ZCCHC3 3'UTR 0.56 TCGA-L5-A4OI-01 20 30898271 30898271 G A KIF3B Missense_Mutation p.D231N 0.18 deleterious(0) benign(0.099) TCGA-L5-A4OI-01 20 30960132 30960132 G T ASXL1 Intron 0.21 TCGA-L5-A4OI-01 20 31021423 31021423 C T ASXL1 Silent p.P474P 0.50 TCGA-L5-A4OI-01 20 3128000 3128001 - C FASTKD5 Frame_Shift_Ins p.P573Afs*17 0.35 TCGA-L5-A4OI-01 20 3218339 3218339 C T SLC4A11 Intron 0.52 TCGA-L5-A4OI-01 20 33346694 33346694 G - NCOA6 Frame_Shift_Del p.P186Rfs*9 0.26 TCGA-L5-A4OI-01 20 33437806 33437806 G A GGT7 Missense_Mutation p.R595C 0.44 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 20 33703204 33703204 A - EDEM2 3'UTR 0.29 TCGA-L5-A4OI-01 20 33875260 33875260 A C FAM83C Missense_Mutation p.V441G 0.40 tolerated_low_confidence(0.21) benign(0.006) TCGA-L5-A4OI-01 20 34817408 34817409 AT - EPB41L1 3'UTR 0.44 TCGA-L5-A4OI-01 20 35090854 35090855 - C DLGAP4 Intron 0.35 TCGA-L5-A4OI-01 20 35155512 35155512 A G DLGAP4 3'UTR 0.32 TCGA-L5-A4OI-01 20 35788556 35788556 C T MROH8 Silent p.P251P 0.45 TCGA-L5-A4OI-01 20 36627649 36627649 G C TTI1 Missense_Mutation p.P912A 0.41 deleterious(0.04) possibly_damaging(0.883) TCGA-L5-A4OI-01 20 3674126 3674126 C T SIGLEC1 Missense_Mutation p.R1159H 0.31 tolerated(0.36) benign(0.127) TCGA-L5-A4OI-01 20 36789862 36789862 G A TGM2 Silent p.Y50Y 0.56 TCGA-L5-A4OI-01 20 36868084 36868084 G - KIAA1755 Frame_Shift_Del p.S532Afs*3 0.35 TCGA-L5-A4OI-01 20 37205594 37205594 G A RALGAPB 3'UTR 0.50 TCGA-L5-A4OI-01 20 3734647 3734647 C G C20orf27 3'UTR 0.47 TCGA-L5-A4OI-01 20 37353279 37353279 G A SLC32A1 5'UTR 0.28 TCGA-L5-A4OI-01 20 37356883 37356883 C A SLC32A1 Silent p.S393S 0.39 TCGA-L5-A4OI-01 20 37529287 37529287 A G PPP1R16B Silent p.E177E 0.39 TCGA-L5-A4OI-01 20 39977440 39977440 T C LPIN3 Missense_Mutation p.V157A 0.40 tolerated(0.78) benign(0.002) TCGA-L5-A4OI-01 20 39987118 39987118 C T LPIN3 Missense_Mutation p.R783C 0.31 deleterious(0.01) probably_damaging(0.975) TCGA-L5-A4OI-01 20 40054758 40054758 G A CHD6 Silent p.S1368S 0.35 TCGA-L5-A4OI-01 20 40757467 40757467 T C PTPRT Missense_Mutation p.D925G 0.33 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 20 41101109 41101109 C T PTPRT Missense_Mutation p.R416H 0.45 deleterious(0) probably_damaging(0.966) TCGA-L5-A4OI-01 20 42088772 42088772 C T SRSF6 Missense_Mutation p.R161C 0.33 deleterious(0.03) possibly_damaging(0.614) TCGA-L5-A4OI-01 20 42972026 42972026 C T R3HDML Silent p.S130S 0.37 TCGA-L5-A4OI-01 20 43704317 43704317 C T STK4 3'UTR 0.42 TCGA-L5-A4OI-01 20 44443031 44443031 C T UBE2C Silent p.G46G 0.47 TCGA-L5-A4OI-01 20 44453471 44453471 C T TNNC2 Silent p.T2T 0.44 TCGA-L5-A4OI-01 20 44513004 44513004 T C ZSWIM1 3'UTR 0.20 TCGA-L5-A4OI-01 20 44641089 44641089 G A MMP9 Missense_Mutation p.A400T 0.38 deleterious(0) possibly_damaging(0.812) TCGA-L5-A4OI-01 20 44669992 44669992 G A SLC12A5 Silent p.T316T 0.27 TCGA-L5-A4OI-01 20 45014792 45014792 G A ELMO2 Silent p.T216T 0.22 TCGA-L5-A4OI-01 20 45174347 45174347 C T OCSTAMP Silent p.A222A 0.53 TCGA-L5-A4OI-01 20 46282985 46282985 T - NCOA3 3'Flank 0.57 TCGA-L5-A4OI-01 20 4771179 4771179 C T RASSF2 Missense_Mutation p.R152H 0.53 deleterious(0) possibly_damaging(0.874) TCGA-L5-A4OI-01 20 48250915 48250915 A - B4GALT5 3'UTR 0.54 TCGA-L5-A4OI-01 20 4850601 4850601 A G SLC23A2 Missense_Mutation p.C401R 0.36 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 20 48568670 48568670 G A RNF114 Missense_Mutation p.D227N 0.34 deleterious(0) benign(0.34) TCGA-L5-A4OI-01 20 4864391 4864391 A G SLC23A2 Missense_Mutation p.Y241H 0.48 deleterious(0) possibly_damaging(0.855) TCGA-L5-A4OI-01 20 48809084 48809084 T - CEBPB 3'UTR 0.38 TCGA-L5-A4OI-01 20 49197838 49197838 G - PTPN1 Frame_Shift_Del p.G377Efs*27 0.26 TCGA-L5-A4OI-01 20 49197980 49197980 G A PTPN1 Missense_Mutation p.A423T 0.28 tolerated(0.06) probably_damaging(0.931) TCGA-L5-A4OI-01 20 50235287 50235287 A G ATP9A Missense_Mutation p.V755A 0.45 deleterious(0.01) probably_damaging(0.967) TCGA-L5-A4OI-01 20 55213472 55213472 T - TFAP2C 3'UTR 0.38 TCGA-L5-A4OI-01 20 57268948 57268948 C T NPEPL1 Silent p.C102C 0.47 TCGA-L5-A4OI-01 20 57289000 57289000 G A NPEPL1 Missense_Mutation p.A385T 0.45 deleterious(0) probably_damaging(0.983) TCGA-L5-A4OI-01 20 58416532 58416532 C T PHACTR3 Missense_Mutation p.A510V 0.28 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OI-01 20 60582619 60582619 A T TAF4 Missense_Mutation p.L653H 0.38 probably_damaging(0.998) TCGA-L5-A4OI-01 20 60754515 60754515 T - SS18L1 3'UTR 0.35 TCGA-L5-A4OI-01 20 60776151 60776151 C T MTG2 3'UTR 0.44 TCGA-L5-A4OI-01 20 60854257 60854258 - C OSBPL2 Frame_Shift_Ins p.I182Hfs*12 0.39 TCGA-L5-A4OI-01 20 60888272 60888272 C T LAMA5 Missense_Mutation p.G2943S 0.27 benign(0) TCGA-L5-A4OI-01 20 60895716 60895716 G A LAMA5 Missense_Mutation p.R2220W 0.39 possibly_damaging(0.876) TCGA-L5-A4OI-01 20 62319098 62319100 TCC - RTEL1 In_Frame_Del p.S511del 0.33 TCGA-L5-A4OI-01 20 62872746 62872746 G A MYT1 3'UTR 0.50 TCGA-L5-A4OI-01 20 6751098 6751098 G A BMP2 Missense_Mutation p.V109M 0.37 deleterious(0) possibly_damaging(0.583) TCGA-L5-A4OI-01 20 8864491 8864491 A G PLCB1 3'UTR 0.30 TCGA-L5-A4OI-01 20 941100 941100 G T RSPO4 Missense_Mutation p.P202H 0.36 deleterious(0.04) possibly_damaging(0.784) TCGA-L5-A4OI-01 21 15744264 15744264 A G HSPA13 3'UTR 0.44 TCGA-L5-A4OI-01 21 22881230 22881230 G A NCAM2 Silent p.L712L 0.27 TCGA-L5-A4OI-01 21 30426571 30426572 - A USP16 3'UTR 0.38 TCGA-L5-A4OI-01 21 31654420 31654420 G A KRTAP24-1 3'UTR 0.29 TCGA-L5-A4OI-01 21 31986169 31986169 C A KRTAP6-1 Missense_Mutation p.G19C 0.37 unknown(0) TCGA-L5-A4OI-01 21 32015452 32015452 T - KRTAP20-3 3'UTR 0.35 TCGA-L5-A4OI-01 21 33684112 33684112 G A MRAP Silent p.A108A 0.33 TCGA-L5-A4OI-01 21 34018914 34018914 T C SYNJ1 Splice_Site p.X1052_splice 0.52 TCGA-L5-A4OI-01 21 34029062 34029062 A - SYNJ1 Frame_Shift_Del p.F949Lfs*5 0.36 TCGA-L5-A4OI-01 21 35209308 35209309 - C ITSN1 Intron 0.46 TCGA-L5-A4OI-01 21 36160796 36160796 T - RUNX1 3'UTR 0.32 TCGA-L5-A4OI-01 21 37711111 37711111 C T MORC3 Missense_Mutation p.A167V 0.33 tolerated(0.09) benign(0.044) TCGA-L5-A4OI-01 21 38117396 38117396 C A SIM2 Missense_Mutation p.P512Q 0.45 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-L5-A4OI-01 21 38390585 38390585 C T RIPPLY3 3'UTR 0.38 TCGA-L5-A4OI-01 21 38887004 38887005 - T DYRK1A 3'Flank 0.47 TCGA-L5-A4OI-01 21 39947607 39947607 C T ERG Silent p.P6P 0.27 TCGA-L5-A4OI-01 21 40558989 40558989 A - BRWD1 Frame_Shift_Del p.L2309* 0.33 TCGA-L5-A4OI-01 21 43547905 43547905 C T UMODL1 Silent p.R1346R 0.37 TCGA-L5-A4OI-01 21 43691299 43691299 T C ABCG1 Splice_Site p.X135_splice 0.45 TCGA-L5-A4OI-01 21 44323366 44323366 T C NDUFV3 Missense_Mutation p.S82P 0.18 tolerated(0.38) benign(0.003) TCGA-L5-A4OI-01 21 44515596 44515596 G A U2AF1 Silent p.N100N 0.43 TCGA-L5-A4OI-01 21 45177871 45177871 T A PDXK 3'UTR 0.33 TCGA-L5-A4OI-01 21 45178018 45178018 C T PDXK 3'UTR 0.29 TCGA-L5-A4OI-01 21 45649927 45649927 G A ICOSLG Intron 0.44 TCGA-L5-A4OI-01 21 45666415 45666417 TTC - DNMT3L In_Frame_Del p.E343del 0.39 TCGA-L5-A4OI-01 21 45742906 45742906 G A PFKL Missense_Mutation p.A491T 0.26 deleterious(0.03) possibly_damaging(0.802) TCGA-L5-A4OI-01 21 45758217 45758217 G A C21orf2 Intron 0.67 TCGA-L5-A4OI-01 21 45970364 45970364 C T KRTAP10-2 3'UTR 0.32 TCGA-L5-A4OI-01 21 46131375 46131375 C T TSPEAR Missense_Mutation p.G19S 0.36 tolerated_low_confidence(0.38) benign(0.011) TCGA-L5-A4OI-01 21 46895449 46895449 G A COL18A1 Silent p.T446T 0.29 TCGA-L5-A4OI-01 21 46951462 46951462 G A SLC19A1 Missense_Mutation p.R264W 0.41 deleterious(0.04) possibly_damaging(0.892) TCGA-L5-A4OI-01 21 47532223 47532223 G A COL6A2 Missense_Mutation p.R149H 0.36 tolerated(0.54) benign(0.006) TCGA-L5-A4OI-01 21 47863768 47863768 C - PCNT Frame_Shift_Del p.P3251Qfs*39 0.32 TCGA-L5-A4OI-01 22 17600401 17600401 G A CECR6 Silent p.S539S 0.42 TCGA-L5-A4OI-01 22 18028458 18028458 A G CECR2 Missense_Mutation p.R1140G 0.28 deleterious(0.03) benign(0.034) TCGA-L5-A4OI-01 22 18291687 18291687 A C MICAL3 Missense_Mutation p.L1858R 0.09 probably_damaging(1) TCGA-L5-A4OI-01 22 18301394 18301394 G A MICAL3 Missense_Mutation p.R1345C 0.35 probably_damaging(0.997) TCGA-L5-A4OI-01 22 18324472 18324472 G A MICAL3 Intron 0.36 TCGA-L5-A4OI-01 22 18387473 18387473 T C MICAL3 Missense_Mutation p.T133A 0.38 benign(0.438) TCGA-L5-A4OI-01 22 18918568 18918568 G A PRODH Silent p.S139S 0.34 TCGA-L5-A4OI-01 22 19119732 19119732 C - TSSK2 Frame_Shift_Del p.K276Sfs*30 0.25 TCGA-L5-A4OI-01 22 19431718 19431718 C - C22orf39 3'UTR 0.32 TCGA-L5-A4OI-01 22 19496067 19496067 G A CDC45 Missense_Mutation p.R389H 0.30 tolerated(0.3) benign(0.37) TCGA-L5-A4OI-01 22 19707861 19707861 C T SEPT5 Silent p.D127D 0.30 TCGA-L5-A4OI-01 22 19808206 19808206 G A GNB1L Missense_Mutation p.R57W 0.54 deleterious(0) probably_damaging(0.972) TCGA-L5-A4OI-01 22 19967479 19967479 G A ARVCF Missense_Mutation p.R395C 0.26 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 22 20133026 20133026 C A ZDHHC8 Intron 0.55 TCGA-L5-A4OI-01 22 20456704 20456704 G A RIMBP3 Missense_Mutation p.A1533V 0.58 tolerated(0.36) benign(0.023) TCGA-L5-A4OI-01 22 20780161 20780161 G T SCARF2 Missense_Mutation p.P706H 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 22 21119499 21119499 C T PI4KA Silent p.E821E 0.34 TCGA-L5-A4OI-01 22 21345976 21345976 G A LZTR1 Missense_Mutation p.R284H 0.48 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 22 21539696 21539696 T C FAM230B RNA 0.17 TCGA-L5-A4OI-01 22 21803168 21803168 C T HIC2 3'UTR 0.09 TCGA-L5-A4OI-01 22 22319678 22319678 G A TOP3B Missense_Mutation p.R308C 0.29 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OI-01 22 22323023 22323023 T C TOP3B Missense_Mutation p.K236E 0.35 deleterious(0.04) benign(0.075) TCGA-L5-A4OI-01 22 22661547 22661547 G T BMS1P20 RNA 0.31 TCGA-L5-A4OI-01 22 23090272 23090272 G A IGLV3-16 Missense_Mutation p.E71K 0.40 tolerated(0.79) benign(0.011) TCGA-L5-A4OI-01 22 23154571 23154572 - A IGLV3-10 Frame_Shift_Ins p.Y50Ifs*19 0.36 TCGA-L5-A4OI-01 22 23404125 23404125 T C RTDR1 Splice_Site p.X218_splice 0.39 TCGA-L5-A4OI-01 22 23503101 23503101 G A RAB36 Missense_Mutation p.A285T 0.41 deleterious(0.03) probably_damaging(0.981) TCGA-L5-A4OI-01 22 24584236 24584236 C T SUSD2 Silent p.L795L 0.41 TCGA-L5-A4OI-01 22 24659571 24659571 G A POM121L9P RNA 0.37 TCGA-L5-A4OI-01 22 26173631 26173631 C T MYO18B Missense_Mutation p.R651W 0.42 deleterious(0.01) benign(0.03) TCGA-L5-A4OI-01 22 26422673 26422673 A G MYO18B Missense_Mutation p.S2245G 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-L5-A4OI-01 22 26423570 26423570 G A MYO18B Missense_Mutation p.E2544K 0.39 deleterious(0.04) possibly_damaging(0.493) TCGA-L5-A4OI-01 22 26829563 26829563 C - ASPHD2 5'UTR 0.26 TCGA-L5-A4OI-01 22 27024395 27024395 G A CRYBA4 Splice_Site p.X148_splice 0.27 TCGA-L5-A4OI-01 22 28196395 28196395 C G MN1 Missense_Mutation p.G46A 0.12 probably_damaging(0.996) TCGA-L5-A4OI-01 22 30189349 30189349 C A ASCC2 Missense_Mutation p.R640M 0.33 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OI-01 22 30415781 30415781 C T MTMR3 Silent p.G711G 0.39 TCGA-L5-A4OI-01 22 30812026 30812026 C T SEC14L2 Silent p.G287G 0.23 TCGA-L5-A4OI-01 22 30864796 30864796 C A SEC14L3 Intron 0.33 TCGA-L5-A4OI-01 22 30951276 30951276 G A GAL3ST1 Silent p.N312N 0.33 TCGA-L5-A4OI-01 22 30953322 30953322 C T GAL3ST1 Missense_Mutation p.A20T 0.50 tolerated(0.92) benign(0.01) TCGA-L5-A4OI-01 22 31301890 31301890 C T OSBP2 Silent p.G814G 0.40 TCGA-L5-A4OI-01 22 31721807 31721808 - T PATZ1 3'UTR 0.30 TCGA-L5-A4OI-01 22 32046690 32046690 C T PISD Missense_Mutation p.R47H 0.40 tolerated_low_confidence(0.54) benign(0.001) TCGA-L5-A4OI-01 22 32625212 32625212 C A SLC5A4 Missense_Mutation p.A417S 0.36 deleterious(0.03) probably_damaging(0.971) TCGA-L5-A4OI-01 22 32793997 32793997 C T RTCB Missense_Mutation p.D249N 0.30 tolerated(0.19) benign(0.013) TCGA-L5-A4OI-01 22 32924884 32924884 C A SYN3 Missense_Mutation p.A403S 0.46 tolerated(0.62) unknown(0) TCGA-L5-A4OI-01 22 35782901 35782901 G A HMOX1 Missense_Mutation p.R123H 0.31 tolerated(0.07) benign(0.009) TCGA-L5-A4OI-01 22 36003307 36003307 C T MB 3'UTR 0.34 TCGA-L5-A4OI-01 22 37328884 37328884 C T CSF2RB Nonsense_Mutation p.R364* 0.49 TCGA-L5-A4OI-01 22 38038868 38038868 G A SH3BP1 Intron 0.41 TCGA-L5-A4OI-01 22 38046679 38046679 G A SH3BP1 Silent p.P515P 0.31 TCGA-L5-A4OI-01 22 38130773 38130773 G - TRIOBP Frame_Shift_Del p.G1479Afs*28 0.39 TCGA-L5-A4OI-01 22 38541585 38541585 A G PLA2G6 Silent p.Y95Y 0.34 TCGA-L5-A4OI-01 22 38962674 38962674 G A DMC1 Missense_Mutation p.T55I 0.33 deleterious(0.05) benign(0.132) TCGA-L5-A4OI-01 22 39138454 39138454 C T SUN2 Missense_Mutation p.R328H 0.42 tolerated(0.09) benign(0.177) TCGA-L5-A4OI-01 22 39263028 39263028 C - CBX6 Frame_Shift_Del p.G142Afs*23 0.38 TCGA-L5-A4OI-01 22 39421260 39421260 C T APOBEC3D Silent p.A132A 0.41 TCGA-L5-A4OI-01 22 39483434 39483434 G T APOBEC3G 3'UTR 0.26 TCGA-L5-A4OI-01 22 41617255 41617255 G A L3MBTL2 Silent p.V302V 0.47 TCGA-L5-A4OI-01 22 41677046 41677046 C A RANGAP1 Translation_Start_Site p.M1? 0.39 deleterious(0) possibly_damaging(0.883) TCGA-L5-A4OI-01 22 42540425 42540425 G A RP4-669P10.16 5'Flank 0.48 TCGA-L5-A4OI-01 22 42670108 42670108 C T Z83851.3 RNA 0.37 TCGA-L5-A4OI-01 22 42776810 42776810 A G NFAM1 3'UTR 0.14 TCGA-L5-A4OI-01 22 43040443 43040443 G A CYB5R3 Missense_Mutation p.R25C 0.33 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-L5-A4OI-01 22 45289355 45289355 G A PHF21B Silent p.S314S 0.37 TCGA-L5-A4OI-01 22 45289398 45289398 C T PHF21B Missense_Mutation p.R300Q 0.44 deleterious(0) probably_damaging(0.97) TCGA-L5-A4OI-01 22 46327144 46327144 C T WNT7B Missense_Mutation p.R135H 0.30 tolerated(0.2) benign(0.035) TCGA-L5-A4OI-01 22 46614298 46614298 G T PPARA Missense_Mutation p.A170S 0.40 deleterious(0.02) possibly_damaging(0.505) TCGA-L5-A4OI-01 22 46776787 46776787 G A CELSR1 Missense_Mutation p.P2385L 0.41 tolerated(0.66) benign(0.004) TCGA-L5-A4OI-01 22 47095243 47095243 G A CERK Missense_Mutation p.R304W 0.48 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 22 49145902 49145902 G A FAM19A5 3'UTR 0.20 TCGA-L5-A4OI-01 22 50167358 50167358 C T BRD1 3'UTR 0.44 TCGA-L5-A4OI-01 22 50181346 50181346 C T BRD1 Intron 0.59 TCGA-L5-A4OI-01 22 50283208 50283208 A - ZBED4 3'UTR 0.27 TCGA-L5-A4OI-01 22 50297002 50297002 G - ALG12 3'UTR 0.30 TCGA-L5-A4OI-01 22 50721802 50721803 CA - PLXNB2 Frame_Shift_Del p.L881Rfs*57 0.42 TCGA-L5-A4OI-01 22 50728029 50728029 C T PLXNB2 Missense_Mutation p.A329T 0.32 tolerated(0.38) benign(0.007) TCGA-L5-A4OI-01 22 50751527 50751528 - G DENND6B Frame_Shift_Ins p.Q453Pfs*9 0.29 TCGA-L5-A4OI-01 22 50853069 50853069 G A PPP6R2 Missense_Mutation p.R168H 0.43 deleterious(0.01) probably_damaging(0.992) TCGA-L5-A4OI-01 22 50900786 50900788 CTT - SBF1 In_Frame_Del p.K748del 0.44 TCGA-L5-A4OI-01 22 51010669 51010669 G A CPT1B Missense_Mutation p.A474V 0.44 deleterious(0) benign(0.228) TCGA-L5-A4OI-01 22 51160845 51160845 G C SHANK3 Missense_Mutation p.K1544N 0.50 probably_damaging(0.994) TCGA-L5-A4OI-01 2 101886151 101886151 T - CNOT11 3'UTR 0.33 TCGA-L5-A4OI-01 2 102851427 102851427 G A IL1RL2 Silent p.S456S 0.29 TCGA-L5-A4OI-01 2 102956601 102956601 A - IL1RL1 Frame_Shift_Del p.K107Nfs*11 0.22 TCGA-L5-A4OI-01 2 107459563 107459563 G - ST6GAL2 Frame_Shift_Del p.R291Afs*24 0.28 TCGA-L5-A4OI-01 2 10815951 10815951 G T NOL10 Silent p.S86S 0.36 TCGA-L5-A4OI-01 2 109371629 109371629 T C RANBP2 Intron 0.15 TCGA-L5-A4OI-01 2 109371641 109371641 A G RANBP2 Missense_Mutation p.K798E 0.09 deleterious(0.05) benign(0.048) TCGA-L5-A4OI-01 2 110374048 110374048 A - SOWAHC 3'UTR 0.32 TCGA-L5-A4OI-01 2 110881594 110881594 T C NPHP1 Missense_Mutation p.D659G 0.14 deleterious(0.03) possibly_damaging(0.702) TCGA-L5-A4OI-01 2 112824589 112824590 - A TMEM87B Frame_Shift_Ins p.N134Kfs*2 0.11 TCGA-L5-A4OI-01 2 11318565 11318565 C T PQLC3 3'UTR 0.50 TCGA-L5-A4OI-01 2 113737642 113737643 - A IL36G Frame_Shift_Ins p.D73Efs*17 0.27 TCGA-L5-A4OI-01 2 113891130 113891130 T - IL1RN 3'UTR 0.43 TCGA-L5-A4OI-01 2 113955413 113955413 C T PSD4 Silent p.P849P 0.39 TCGA-L5-A4OI-01 2 114258228 114258228 G A FOXD4L1 3'UTR 0.41 TCGA-L5-A4OI-01 2 114400756 114400756 T - RABL2A 3'UTR 0.30 TCGA-L5-A4OI-01 2 11758984 11758984 G A GREB1 Missense_Mutation p.R1328Q 0.36 tolerated(0.36) benign(0.064) TCGA-L5-A4OI-01 2 121108658 121108658 C T INHBB 3'UTR 0.33 TCGA-L5-A4OI-01 2 121555027 121555027 C T GLI2 Missense_Mutation p.A44V 0.46 tolerated_low_confidence(0.07) benign(0.027) TCGA-L5-A4OI-01 2 122135110 122135110 G A CLASP1 Missense_Mutation p.P1203S 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OI-01 2 130738037 130738037 A G RAB6C Missense_Mutation p.S117G 0.05 tolerated_low_confidence(0.06) benign(0.011) TCGA-L5-A4OI-01 2 130868115 130868115 C T POTEF Splice_Site p.X352_splice 0.34 TCGA-L5-A4OI-01 2 131520251 131520251 C - AMER3 Frame_Shift_Del p.P204Rfs*62 0.30 TCGA-L5-A4OI-01 2 131981607 131981607 A - POTEE Frame_Shift_Del p.N269Tfs*20 0.38 TCGA-L5-A4OI-01 2 132021787 132021787 C A POTEE Missense_Mutation p.A920D 0.12 deleterious_low_confidence(0) probably_damaging(1) TCGA-L5-A4OI-01 2 133014620 133014620 G A MIR663B RNA 0.12 TCGA-L5-A4OI-01 2 135982051 135982051 T C ZRANB3 Missense_Mutation p.D732G 0.30 tolerated(0.05) benign(0.013) TCGA-L5-A4OI-01 2 136528170 136528170 A - UBXN4 Frame_Shift_Del p.T231Lfs*16 0.37 TCGA-L5-A4OI-01 2 136542432 136542442 GTACATGGTAA AGTACATGGT UBXN4 3'UTR 0.09 TCGA-L5-A4OI-01 2 139327377 139327377 T - SPOPL 3'UTR 0.53 TCGA-L5-A4OI-01 2 140989295 140989296 - T LRP1B 3'UTR 0.37 TCGA-L5-A4OI-01 2 141201960 141201960 T C LRP1B Silent p.P3411P 0.35 TCGA-L5-A4OI-01 2 141259309 141259309 T C LRP1B Missense_Mutation p.K2933E 0.38 benign(0.292) TCGA-L5-A4OI-01 2 141946015 141946015 C T LRP1B Missense_Mutation p.A330T 0.54 possibly_damaging(0.787) TCGA-L5-A4OI-01 2 145146085 145146085 A T ZEB2 3'UTR 0.29 TCGA-L5-A4OI-01 2 152420128 152420128 T G NEB Silent p.R6229R 0.23 TCGA-L5-A4OI-01 2 152424871 152424871 G - NEB Frame_Shift_Del p.L5899Cfs*51 0.30 TCGA-L5-A4OI-01 2 157182418 157182418 C - NR4A2 Frame_Shift_Del p.L546* 0.35 TCGA-L5-A4OI-01 2 157185943 157185943 C T NR4A2 Silent p.P252P 0.46 TCGA-L5-A4OI-01 2 157186184 157186184 C T NR4A2 Missense_Mutation p.R172H 0.54 deleterious(0.02) probably_damaging(0.973) TCGA-L5-A4OI-01 2 158412733 158412733 C T ACVR1C Missense_Mutation p.R139Q 0.49 tolerated(0.11) benign(0.111) TCGA-L5-A4OI-01 2 159516742 159516742 C T PKP4 Intron 0.40 TCGA-L5-A4OI-01 2 160175549 160175549 A - BAZ2B 3'UTR 0.28 TCGA-L5-A4OI-01 2 160175619 160175619 A - BAZ2B 3'UTR 0.40 TCGA-L5-A4OI-01 2 161130975 161130975 T C RBMS1 3'UTR 0.21 TCGA-L5-A4OI-01 2 162081139 162081139 T A TANK Intron 0.53 TCGA-L5-A4OI-01 2 162281351 162281351 T - TBR1 3'UTR 0.44 TCGA-L5-A4OI-01 2 164464251 164464252 - A FIGN 3'UTR 0.33 TCGA-L5-A4OI-01 2 166535346 166535346 C T CSRNP3 Nonsense_Mutation p.R281* 0.54 TCGA-L5-A4OI-01 2 167313546 167313546 A G SCN7A Missense_Mutation p.V375A 0.56 deleterious(0) possibly_damaging(0.876) TCGA-L5-A4OI-01 2 170366496 170366496 A - KLHL41 Frame_Shift_Del p.K72Rfs*3 0.32 TCGA-L5-A4OI-01 2 172016964 172016964 C - TLK1 5'UTR 0.43 TCGA-L5-A4OI-01 2 174062830 174062830 A - MLTK Frame_Shift_Del p.N222Tfs*4 0.30 TCGA-L5-A4OI-01 2 175297144 175297144 C A GPR155 3'UTR 0.40 TCGA-L5-A4OI-01 2 176793655 176793655 A C KIAA1715 3'UTR 0.19 TCGA-L5-A4OI-01 2 176984426 176984427 - A HOXD10 3'UTR 0.32 TCGA-L5-A4OI-01 2 17698736 17698737 - T RAD51AP2 Frame_Shift_Ins p.T316Nfs*13 0.36 TCGA-L5-A4OI-01 2 17836516 17836516 G A VSNL1 Missense_Mutation p.G144D 0.33 deleterious(0.05) possibly_damaging(0.796) TCGA-L5-A4OI-01 2 179201135 179201135 G A OSBPL6 Silent p.S255S 0.50 TCGA-L5-A4OI-01 2 179584325 179584325 T - TTN Frame_Shift_Del p.N7965Tfs*27 0.29 TCGA-L5-A4OI-01 2 179631242 179631242 A T TTN Missense_Mutation p.V3190D 0.35 TCGA-L5-A4OI-01 2 179643760 179643760 C T TTN Missense_Mutation p.R1350H 0.29 TCGA-L5-A4OI-01 2 179643779 179643779 C A TTN Missense_Mutation p.D1344Y 0.39 TCGA-L5-A4OI-01 2 179974148 179974148 T C SESTD1 3'UTR 0.32 TCGA-L5-A4OI-01 2 180016104 180016104 G A SESTD1 Silent p.S128S 0.45 TCGA-L5-A4OI-01 2 182347339 182347339 A T ITGA4 Missense_Mutation p.R334S 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 2 183731079 183731079 C T FRZB Missense_Mutation p.A68T 0.41 deleterious(0) possibly_damaging(0.681) TCGA-L5-A4OI-01 2 185803528 185803528 C A ZNF804A Silent p.I1135I 0.58 TCGA-L5-A4OI-01 2 187692666 187692666 T - ZSWIM2 3'UTR 0.38 TCGA-L5-A4OI-01 2 189839121 189839121 G A COL3A1 5'UTR 0.40 TCGA-L5-A4OI-01 2 189904132 189904132 G A COL5A2 Missense_Mutation p.T1264M 0.35 unknown(0) TCGA-L5-A4OI-01 2 190530112 190530112 G T ASNSD1 5'UTR 0.41 TCGA-L5-A4OI-01 2 191065824 191065824 A C C2orf88 3'UTR 0.42 TCGA-L5-A4OI-01 2 196602560 196602560 A - DNAH7 3'UTR 0.33 TCGA-L5-A4OI-01 2 197184627 197184627 A G HECW2 Silent p.D329D 0.43 TCGA-L5-A4OI-01 2 198436318 198436318 G A RFTN2 3'UTR 0.35 TCGA-L5-A4OI-01 2 198571219 198571219 C T MARS2 Missense_Mutation p.R364C 0.33 deleterious(0.02) possibly_damaging(0.773) TCGA-L5-A4OI-01 2 202216070 202216070 G A ALS2CR12 Missense_Mutation p.R20W 0.27 deleterious(0.02) probably_damaging(0.939) TCGA-L5-A4OI-01 2 20232786 20232786 A - LAPTM4A 3'UTR 0.23 TCGA-L5-A4OI-01 2 202566414 202566414 G A ALS2 3'UTR 0.14 TCGA-L5-A4OI-01 2 202901451 202901451 C T FZD7 3'UTR 0.47 TCGA-L5-A4OI-01 2 202902649 202902649 T - FZD7 3'UTR 0.27 TCGA-L5-A4OI-01 2 203420804 203420804 A G BMPR2 Missense_Mutation p.M806V 0.43 tolerated(0.85) benign(0) TCGA-L5-A4OI-01 2 204299270 204299270 G T ABI2 3'Flank 0.38 TCGA-L5-A4OI-01 2 204571260 204571260 T C CD28 5'Flank 0.43 TCGA-L5-A4OI-01 2 204599709 204599709 G A CD28 3'UTR 0.50 TCGA-L5-A4OI-01 2 206882406 206882406 T - INO80D Frame_Shift_Del p.M514Wfs*5 0.45 TCGA-L5-A4OI-01 2 207460861 207460861 C - ADAM23 Frame_Shift_Del p.K781Rfs*14 0.52 TCGA-L5-A4OI-01 2 207620188 207620188 G A MDH1B Missense_Mutation p.T152M 0.51 tolerated(0.15) benign(0.274) TCGA-L5-A4OI-01 2 209190598 209190598 T G PIKFYVE Missense_Mutation p.D1021E 0.30 tolerated(0.12) possibly_damaging(0.599) TCGA-L5-A4OI-01 2 210596353 210596353 T - MAP2 3'UTR 0.39 TCGA-L5-A4OI-01 2 212989493 212989493 T C ERBB4 Missense_Mutation p.D73G 0.56 deleterious(0.01) possibly_damaging(0.889) TCGA-L5-A4OI-01 2 215855716 215855716 A T ABCA12 Missense_Mutation p.F1112I 0.53 tolerated(0.43) benign(0.016) TCGA-L5-A4OI-01 2 217540686 217540687 - A IGFBP5 3'UTR 0.53 TCGA-L5-A4OI-01 2 219344406 219344406 T C USP37 Missense_Mutation p.N623S 0.35 tolerated(0.33) probably_damaging(0.976) TCGA-L5-A4OI-01 2 220089461 220089461 C T ATG9A Missense_Mutation p.R211H 0.30 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OI-01 2 220173969 220173969 G A PTPRN Missense_Mutation p.P29L 0.43 tolerated(0.37) unknown(0) TCGA-L5-A4OI-01 2 220197269 220197269 C - RESP18 Frame_Shift_Del p.G70Afs*14 0.27 TCGA-L5-A4OI-01 2 220291360 220291360 G A DES 3'UTR 0.35 TCGA-L5-A4OI-01 2 220348876 220348876 C - SPEG Frame_Shift_Del p.Q2233Rfs*6 0.37 TCGA-L5-A4OI-01 2 220416864 220416864 C T OBSL1 Missense_Mutation p.A1795T 0.47 tolerated(0.64) possibly_damaging(0.905) TCGA-L5-A4OI-01 2 220432447 220432447 T G OBSL1 Missense_Mutation p.R509S 0.43 deleterious(0) probably_damaging(0.971) TCGA-L5-A4OI-01 2 220501470 220501470 C T SLC4A3 Silent p.F830F 0.33 TCGA-L5-A4OI-01 2 227663183 227663183 T C IRS1 Missense_Mutation p.E91G 0.49 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OI-01 2 227663189 227663189 C T IRS1 Missense_Mutation p.R89Q 0.33 deleterious(0) possibly_damaging(0.88) TCGA-L5-A4OI-01 2 228882440 228882440 C A SPHKAP Missense_Mutation p.A1044S 0.50 tolerated(0.06) probably_damaging(0.925) TCGA-L5-A4OI-01 2 229889189 229889189 A - PID1 3'UTR 0.35 TCGA-L5-A4OI-01 2 229890602 229890602 C T PID1 Missense_Mutation p.A165T 0.45 tolerated(0.66) probably_damaging(0.998) TCGA-L5-A4OI-01 2 230672543 230672544 - A TRIP12 Frame_Shift_Ins p.A745Cfs*3 0.37 TCGA-L5-A4OI-01 2 231037655 231037655 G A SP110 Silent p.C537C 0.42 TCGA-L5-A4OI-01 2 231380664 231380664 C A SP100 Intron 0.15 TCGA-L5-A4OI-01 2 231867434 231867434 C T SPATA3 Missense_Mutation p.A170V 0.08 deleterious(0.03) benign(0.002) TCGA-L5-A4OI-01 2 232326270 232326270 G A NCL Silent p.D198D 0.38 TCGA-L5-A4OI-01 2 232672289 232672289 C T COPS7B Silent p.H243H 0.44 TCGA-L5-A4OI-01 2 233350693 233350693 G A ECEL1 Missense_Mutation p.A224V 0.25 tolerated(0.15) benign(0.058) TCGA-L5-A4OI-01 2 235403794 235403794 T A ARL4C 3'UTR 0.27 TCGA-L5-A4OI-01 2 235403795 235403795 T A ARL4C 3'UTR 0.44 TCGA-L5-A4OI-01 2 23785143 23785143 C T KLHL29 Missense_Mutation p.T26M 0.33 tolerated_low_confidence(0.17) benign(0.334) TCGA-L5-A4OI-01 2 239079047 239079047 A - ILKAP 3'UTR 0.44 TCGA-L5-A4OI-01 2 240036792 240036792 G A HDAC4 Missense_Mutation p.P578L 0.36 tolerated(0.21) benign(0) TCGA-L5-A4OI-01 2 241459933 241459933 C T ANKMY1 Missense_Mutation p.R528Q 0.15 tolerated(0.61) benign(0.003) TCGA-L5-A4OI-01 2 241494373 241494373 C T ANKMY1 5'UTR 0.20 TCGA-L5-A4OI-01 2 241621696 241621696 A G AQP12B Missense_Mutation p.Y187H 0.29 tolerated(0.17) benign(0.008) TCGA-L5-A4OI-01 2 241631890 241631890 T C AQP12A Missense_Mutation p.Y175H 0.17 tolerated(0.17) benign(0.018) TCGA-L5-A4OI-01 2 241991164 241991164 G A SNED1 Missense_Mutation p.R580Q 0.30 tolerated(0.13) benign(0.048) TCGA-L5-A4OI-01 2 242179021 242179021 T C HDLBP Missense_Mutation p.D869G 0.43 deleterious(0) probably_damaging(0.957) TCGA-L5-A4OI-01 2 242572997 242572997 G A THAP4 Missense_Mutation p.A192V 0.43 tolerated_low_confidence(0.31) benign(0.001) TCGA-L5-A4OI-01 2 242741377 242741377 C T GAL3ST2 Missense_Mutation p.R101C 0.42 deleterious(0.05) benign(0.104) TCGA-L5-A4OI-01 2 25013357 25013357 C T PTRHD1 Missense_Mutation p.A116T 0.40 deleterious(0.02) benign(0.075) TCGA-L5-A4OI-01 2 25180754 25180754 C T DNAJC27 Nonsense_Mutation p.W110* 0.38 TCGA-L5-A4OI-01 2 25505431 25505431 C - DNMT3A Frame_Shift_Del p.Q110Rfs*52 0.33 TCGA-L5-A4OI-01 2 26150137 26150137 G A KIF3C 3'UTR 0.26 TCGA-L5-A4OI-01 2 26150649 26150649 T - KIF3C 3'UTR 0.50 TCGA-L5-A4OI-01 2 27457496 27457496 G - CAD Frame_Shift_Del p.E1245Kfs*8 0.11 TCGA-L5-A4OI-01 2 27682634 27682634 C - IFT172 Frame_Shift_Del p.D862Tfs*42 0.29 TCGA-L5-A4OI-01 2 27695198 27695198 G A IFT172 Silent p.T481T 0.37 TCGA-L5-A4OI-01 2 27805526 27805526 G - C2orf16 3'UTR 0.36 TCGA-L5-A4OI-01 2 28634811 28634813 GGA - FOSL2 In_Frame_Del p.E162del 0.44 TCGA-L5-A4OI-01 2 29087951 29087951 T C TRMT61B Missense_Mutation p.N245S 0.41 tolerated(0.62) benign(0.002) TCGA-L5-A4OI-01 2 29294162 29294162 G - C2orf71 Frame_Shift_Del p.P989Lfs*46 0.29 TCGA-L5-A4OI-01 2 30382363 30382363 G A YPEL5 3'UTR 0.10 TCGA-L5-A4OI-01 2 32626374 32626374 C T BIRC6 Missense_Mutation p.S393L 0.42 benign(0.009) TCGA-L5-A4OI-01 2 32740485 32740485 G A BIRC6 Missense_Mutation p.R3666H 0.38 benign(0.002) TCGA-L5-A4OI-01 2 32843744 32843744 T - BIRC6 3'UTR 0.33 TCGA-L5-A4OI-01 2 33810498 33810498 C A FAM98A Missense_Mutation p.R301M 0.37 deleterious(0.03) possibly_damaging(0.748) TCGA-L5-A4OI-01 2 37208635 37208635 A - HEATR5B Frame_Shift_Del p.*2072N 0.48 TCGA-L5-A4OI-01 2 43801837 43801837 G A THADA Missense_Mutation p.T456M 0.51 tolerated(0.15) benign(0.007) TCGA-L5-A4OI-01 2 45169257 45169257 C - SIX3 Frame_Shift_Del p.L7* 0.46 TCGA-L5-A4OI-01 2 46986990 46986990 G A SOCS5 Missense_Mutation p.A441T 0.38 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OI-01 2 48025912 48025912 G A MSH6 Missense_Mutation p.E264K 0.29 deleterious(0.04) probably_damaging(0.991) TCGA-L5-A4OI-01 2 54885024 54885024 G A SPTBN1 Silent p.V2028V 0.19 TCGA-L5-A4OI-01 2 54891759 54891759 C T SPTBN1 Missense_Mutation p.S2197L 0.29 deleterious(0.04) benign(0.018) TCGA-L5-A4OI-01 2 55772170 55772171 - A CCDC104 3'UTR 0.29 TCGA-L5-A4OI-01 2 56612188 56612188 T - CCDC85A 3'UTR 0.27 TCGA-L5-A4OI-01 2 58373508 58373509 - A VRK2 Frame_Shift_Ins p.V364Sfs*4 0.38 TCGA-L5-A4OI-01 2 5838418 5838484 TGTTGGTCTCTTAAGTAAGTCTTATTTTTAACTAAGCATTGACAGAATATCTTAAAATGGTAACCTG GTTGGTCTCTTAAGTAAGTCTTATTTTTAACTAAGCATTGACAGAATATCTTAAAATGGTAACCT SOX11 3'UTR 0.18 TCGA-L5-A4OI-01 2 5838484 5838484 G - SOX11 3'UTR 0.23 TCGA-L5-A4OI-01 2 5840802 5840802 T - SOX11 3'UTR 0.31 TCGA-L5-A4OI-01 2 61438924 61438924 G A USP34 Silent p.C2941C 0.41 TCGA-L5-A4OI-01 2 62733283 62733283 C A TMEM17 5'UTR 0.38 TCGA-L5-A4OI-01 2 63281286 63281286 C T OTX1 Missense_Mutation p.R68W 0.44 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 2 63667788 63667788 C T WDPCP Intron 0.41 TCGA-L5-A4OI-01 2 64819324 64819324 G A AFTPH 3'UTR 0.42 TCGA-L5-A4OI-01 2 65248232 65248232 C - SLC1A4 Frame_Shift_Del p.V519Wfs*60 0.26 TCGA-L5-A4OI-01 2 65314388 65314388 T C RAB1A 3'UTR 0.40 TCGA-L5-A4OI-01 2 65538061 65538061 A - SPRED2 3'UTR 0.34 TCGA-L5-A4OI-01 2 67626314 67626314 A G ETAA1 Silent p.T79T 0.41 TCGA-L5-A4OI-01 2 68882356 68882356 G A PROKR1 Missense_Mutation p.R277H 0.42 tolerated(0.07) benign(0.192) TCGA-L5-A4OI-01 2 69002247 69002247 C - ARHGAP25 Intron 0.33 TCGA-L5-A4OI-01 2 69704020 69704020 T - AAK1 Frame_Shift_Del p.N928Tfs*21 0.36 TCGA-L5-A4OI-01 2 70166271 70166271 T - MXD1 3'UTR 0.27 TCGA-L5-A4OI-01 2 71017547 71017547 C T FIGLA Missense_Mutation p.R75H 0.50 deleterious(0) probably_damaging(0.982) TCGA-L5-A4OI-01 2 72358863 72358863 G A CYP26B1 3'UTR 0.40 TCGA-L5-A4OI-01 2 73316229 73316229 C T RAB11FIP5 Missense_Mutation p.A216T 0.36 tolerated(0.28) possibly_damaging(0.603) TCGA-L5-A4OI-01 2 73435720 73435720 G A NOTO Missense_Mutation p.R192Q 0.33 tolerated(0.52) benign(0.258) TCGA-L5-A4OI-01 2 73676528 73676528 C T ALMS1 Silent p.S957S 0.52 TCGA-L5-A4OI-01 2 74643123 74643123 C T C2orf81 Intron 0.38 TCGA-L5-A4OI-01 2 74692123 74692123 G C MOGS Missense_Mutation p.D84E 0.17 deleterious(0.03) benign(0.048) TCGA-L5-A4OI-01 2 74709916 74709916 G A CCDC142 Missense_Mutation p.P17S 0.37 tolerated_low_confidence(0.16) benign(0.031) TCGA-L5-A4OI-01 2 75061670 75061670 C A HK2 5'UTR 0.49 TCGA-L5-A4OI-01 2 75916352 75916352 C A GCFC2 Splice_Site p.X447_splice 0.31 TCGA-L5-A4OI-01 2 80085237 80085237 G A CTNNA2 Missense_Mutation p.A133T 0.33 tolerated(0.05) possibly_damaging(0.78) TCGA-L5-A4OI-01 2 85622671 85622671 G - CAPG Frame_Shift_Del p.P324Rfs*61 0.33 TCGA-L5-A4OI-01 2 86302261 86302261 G A POLR1A Silent p.D501D 0.47 TCGA-L5-A4OI-01 2 88383895 88383895 G A SMYD1 Silent p.G66G 0.44 TCGA-L5-A4OI-01 2 8890414 8890414 G - KIDINS220 Frame_Shift_Del p.P1081Rfs*48 0.24 TCGA-L5-A4OI-01 2 89034075 89034075 C A RPIA Missense_Mutation p.L157I 0.38 tolerated(0.32) benign(0.007) TCGA-L5-A4OI-01 2 9545016 9545016 T - ITGB1BP1 3'UTR 0.33 TCGA-L5-A4OI-01 2 95483039 95483039 T - ANKRD20A8P RNA 0.43 TCGA-L5-A4OI-01 2 95848112 95848112 C T ZNF2 3'UTR 0.75 TCGA-L5-A4OI-01 2 95947697 95947697 C - PROM2 Frame_Shift_Del p.P527Rfs*3 0.20 TCGA-L5-A4OI-01 2 96078465 96078466 - C FAHD2A Frame_Shift_Ins p.G282Rfs*17 0.36 TCGA-L5-A4OI-01 2 96262096 96262096 A G TRIM43 Silent p.K218K 0.28 TCGA-L5-A4OI-01 2 96592969 96592969 A C ANKRD36C 3'Flank 0.51 TCGA-L5-A4OI-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.30 TCGA-L5-A4OI-01 2 97756048 97756048 T C FAHD2B Missense_Mutation p.Q87R 0.37 tolerated(0.34) benign(0.001) TCGA-L5-A4OI-01 2 97757244 97757244 G A FAHD2B Missense_Mutation p.T67M 0.42 tolerated(0.11) benign(0.001) TCGA-L5-A4OI-01 2 97899538 97899538 C T ANKRD36 Silent p.D1367D 0.34 TCGA-L5-A4OI-01 2 98351785 98351785 C T ZAP70 Silent p.R385R 0.34 TCGA-L5-A4OI-01 2 98804579 98804579 C T VWA3B Missense_Mutation p.R485W 0.36 deleterious(0.01) possibly_damaging(0.489) TCGA-L5-A4OI-01 2 99181151 99181151 C T INPP4A Missense_Mutation p.H698Y 0.34 tolerated(0.21) benign(0.191) TCGA-L5-A4OI-01 2 99995486 99995486 G A EIF5B Missense_Mutation p.R616Q 0.28 possibly_damaging(0.608) TCGA-L5-A4OI-01 3 10048499 10048499 G T AC022007.5 RNA 0.48 TCGA-L5-A4OI-01 3 101369501 101369501 A - ZBTB11 3'UTR 0.25 TCGA-L5-A4OI-01 3 10400558 10400558 G A ATP2B2 Silent p.R651R 0.33 TCGA-L5-A4OI-01 3 107762206 107762206 T - CD47 3'Flank 0.22 TCGA-L5-A4OI-01 3 108897049 108897049 G - LINC00488 RNA 0.38 TCGA-L5-A4OI-01 3 11079208 11079209 - A SLC6A1 3'UTR 0.33 TCGA-L5-A4OI-01 3 111705797 111705797 C T ABHD10 Missense_Mutation p.L159F 0.37 tolerated(0.06) possibly_damaging(0.558) TCGA-L5-A4OI-01 3 111719763 111719763 G A TAGLN3 Missense_Mutation p.D109N 0.40 deleterious(0.01) possibly_damaging(0.769) TCGA-L5-A4OI-01 3 111730651 111730651 G T TAGLN3 Missense_Mutation p.G133C 0.28 deleterious(0.01) probably_damaging(0.916) TCGA-L5-A4OI-01 3 112005610 112005610 A - SLC9C1 Frame_Shift_Del p.F10Sfs*11 0.30 TCGA-L5-A4OI-01 3 113374557 113374557 C T KIAA2018 Missense_Mutation p.R1991H 0.43 probably_damaging(0.999) TCGA-L5-A4OI-01 3 114058003 114058003 G - ZBTB20 Frame_Shift_Del p.P692Lfs*43 0.40 TCGA-L5-A4OI-01 3 114070354 114070354 G A ZBTB20 Missense_Mutation p.R191C 0.31 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OI-01 3 11598073 11598073 A - ATG7 3'UTR 0.62 TCGA-L5-A4OI-01 3 119176962 119176962 A - TMEM39A Frame_Shift_Del p.F80Sfs*33 0.35 TCGA-L5-A4OI-01 3 121150700 121150700 A - POLQ 3'UTR 0.26 TCGA-L5-A4OI-01 3 121208121 121208121 G T POLQ Silent p.P1219P 0.40 TCGA-L5-A4OI-01 3 121209212 121209212 G A POLQ Missense_Mutation p.R856C 0.44 deleterious(0.01) benign(0.339) TCGA-L5-A4OI-01 3 12198914 12198914 T - TIMP4 Frame_Shift_Del p.M70Cfs*9 0.28 TCGA-L5-A4OI-01 3 12225293 12225293 G - SYN2 RNA 0.35 TCGA-L5-A4OI-01 3 122631738 122631738 C T SEMA5B Missense_Mutation p.V947M 0.40 tolerated(0.08) possibly_damaging(0.742) TCGA-L5-A4OI-01 3 123010123 123010123 C T ADCY5 Missense_Mutation p.R1055H 0.30 deleterious(0.01) possibly_damaging(0.629) TCGA-L5-A4OI-01 3 123339253 123339253 C T MYLK Intron 0.37 TCGA-L5-A4OI-01 3 123632826 123632826 A - CCDC14 3'Flank 0.34 TCGA-L5-A4OI-01 3 123633091 123633091 T - CCDC14 3'Flank 0.30 TCGA-L5-A4OI-01 3 12434182 12434182 A - PPARG Frame_Shift_Del p.S186Vfs*47 0.34 TCGA-L5-A4OI-01 3 124397062 124397062 C T KALRN Missense_Mutation p.R678C 0.24 deleterious(0) possibly_damaging(0.897) TCGA-L5-A4OI-01 3 124420937 124420937 T G KALRN Silent p.A986A 0.48 TCGA-L5-A4OI-01 3 124733606 124733606 G A HEG1 Intron 0.47 TCGA-L5-A4OI-01 3 124948766 124948767 - T ZNF148 3'UTR 0.36 TCGA-L5-A4OI-01 3 124950903 124950903 T - ZNF148 3'UTR 0.41 TCGA-L5-A4OI-01 3 125831672 125831672 G A ALDH1L1 Nonsense_Mutation p.R722* 0.48 TCGA-L5-A4OI-01 3 126062510 126062510 A - KLF15 3'UTR 0.34 TCGA-L5-A4OI-01 3 126070691 126070691 C T KLF15 Missense_Mutation p.G359S 0.40 deleterious(0.03) probably_damaging(0.966) TCGA-L5-A4OI-01 3 12613765 12613765 T C MKRN2 Missense_Mutation p.C179R 0.29 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OI-01 3 126207105 126207105 A C UROC1 Missense_Mutation p.F636V 0.39 tolerated(0.71) probably_damaging(0.988) TCGA-L5-A4OI-01 3 127339610 127339610 C T MCM2 Missense_Mutation p.R779C 0.42 deleterious(0) probably_damaging(0.954) TCGA-L5-A4OI-01 3 129036981 129036981 G A H1FX 5'Flank 0.23 TCGA-L5-A4OI-01 3 130743303 130743303 T - ASTE1 Frame_Shift_Del p.K283Rfs*22 0.35 TCGA-L5-A4OI-01 3 132320872 132320872 G A ACKR4 3'UTR 0.28 TCGA-L5-A4OI-01 3 133306658 133306658 T - CDV3 Intron 0.64 TCGA-L5-A4OI-01 3 13361314 13361314 C T NUP210 Missense_Mutation p.A1778T 0.46 tolerated(0.88) benign(0) TCGA-L5-A4OI-01 3 133647073 133647073 C A C3orf36 3'UTR 0.35 TCGA-L5-A4OI-01 3 133670083 133670083 A - SLCO2A1 Frame_Shift_Del p.F277Sfs*8 0.45 TCGA-L5-A4OI-01 3 13417860 13417860 G A NUP210 Silent p.Y408Y 0.41 TCGA-L5-A4OI-01 3 13538267 13538268 - C HDAC11 Frame_Shift_Ins p.V98Rfs*70 0.40 TCGA-L5-A4OI-01 3 135869419 135869419 T - MSL2 3'UTR 0.37 TCGA-L5-A4OI-01 3 138456559 138456559 A C PIK3CB Missense_Mutation p.I264S 0.40 tolerated(0.47) benign(0.065) TCGA-L5-A4OI-01 3 138724365 138724365 G A PRR23A Missense_Mutation p.P249L 0.57 deleterious(0.05) unknown(0) TCGA-L5-A4OI-01 3 140123554 140123554 A T CLSTN2 Missense_Mutation p.I195F 0.06 deleterious(0) probably_damaging(0.984) TCGA-L5-A4OI-01 3 141164136 141164136 A G ZBTB38 Missense_Mutation p.K969R 0.44 tolerated(0.25) benign(0.017) TCGA-L5-A4OI-01 3 14183180 14183180 C T TMEM43 Missense_Mutation p.T363I 0.39 tolerated(0.14) possibly_damaging(0.548) TCGA-L5-A4OI-01 3 145788602 145788602 A C PLOD2 Missense_Mutation p.W727G 0.39 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 3 147104255 147104255 T A ZIC4 3'UTR 0.47 TCGA-L5-A4OI-01 3 148558742 148558742 C T CPB1 Missense_Mutation p.R152C 0.34 deleterious(0) probably_damaging(0.95) TCGA-L5-A4OI-01 3 150177347 150177347 T - TSC22D2 3'UTR 0.24 TCGA-L5-A4OI-01 3 150260505 150260505 A - SERP1 3'UTR 0.40 TCGA-L5-A4OI-01 3 150293481 150293481 G A EIF2A Missense_Mutation p.D477N 0.52 tolerated(0.39) benign(0.126) TCGA-L5-A4OI-01 3 151012592 151012593 - A GPR87 Frame_Shift_Ins p.G148Wfs*44 0.30 TCGA-L5-A4OI-01 3 151085954 151085954 C T MED12L Silent p.D1120D 0.48 TCGA-L5-A4OI-01 3 151150881 151150881 T - MED12L 3'UTR 0.36 TCGA-L5-A4OI-01 3 151151459 151151459 A - MED12L 3'UTR 0.79 TCGA-L5-A4OI-01 3 151164703 151164703 A G IGSF10 Silent p.I1022I 0.45 TCGA-L5-A4OI-01 3 151165983 151165983 G T IGSF10 Missense_Mutation p.H596N 0.34 tolerated(0.49) benign(0.112) TCGA-L5-A4OI-01 3 152182026 152182026 A - MBNL1 3'UTR 0.24 TCGA-L5-A4OI-01 3 152883372 152883373 TG - RAP2B 3'UTR 0.30 TCGA-L5-A4OI-01 3 153973715 153973715 T - ARHGEF26 3'UTR 0.69 TCGA-L5-A4OI-01 3 156255519 156255519 T - KCNAB1 3'UTR 0.11 TCGA-L5-A4OI-01 3 156866204 156866204 T - CCNL1 Frame_Shift_Del p.K469Nfs*64 0.29 TCGA-L5-A4OI-01 3 160219033 160219033 A - KPNA4 3'UTR 0.34 TCGA-L5-A4OI-01 3 164905296 164905296 A - SLITRK3 3'UTR 0.46 TCGA-L5-A4OI-01 3 164906498 164906498 C T SLITRK3 Silent p.R707R 0.38 TCGA-L5-A4OI-01 3 164907944 164907944 C A SLITRK3 Missense_Mutation p.M225I 0.33 deleterious(0.02) probably_damaging(0.989) TCGA-L5-A4OI-01 3 165547749 165547749 A - BCHE Frame_Shift_Del p.L358* 0.29 TCGA-L5-A4OI-01 3 168833257 168833257 T - MECOM Frame_Shift_Del p.G679Efs*30 0.26 TCGA-L5-A4OI-01 3 169820611 169820611 C T PHC3 Silent p.A860A 0.32 TCGA-L5-A4OI-01 3 170893043 170893045 CTT - TNIK In_Frame_Del p.K257del 0.50 TCGA-L5-A4OI-01 3 172365826 172365826 T - NCEH1 Frame_Shift_Del p.S105Afs*8 0.35 TCGA-L5-A4OI-01 3 176739348 176739348 A T TBL1XR1 3'UTR 0.32 TCGA-L5-A4OI-01 3 176740380 176740382 ATG - TBL1XR1 3'UTR 0.44 TCGA-L5-A4OI-01 3 176742006 176742006 A - TBL1XR1 3'UTR 0.25 TCGA-L5-A4OI-01 3 178984607 178984607 C A KCNMB3 5'UTR 0.31 TCGA-L5-A4OI-01 3 180686015 180686015 C T FXR1 Missense_Mutation p.R459C 0.13 deleterious_low_confidence(0.01) probably_damaging(0.912) TCGA-L5-A4OI-01 3 180694867 180694867 T C FXR1 3'UTR 0.22 TCGA-L5-A4OI-01 3 183818280 183818280 C T HTR3E Silent p.G40G 0.44 TCGA-L5-A4OI-01 3 183961697 183961697 A G ALG3 Missense_Mutation p.W272R 0.28 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 3 184001715 184001715 G A ECE2 Missense_Mutation p.R438H 0.16 tolerated(0.36) probably_damaging(0.912) TCGA-L5-A4OI-01 3 184062461 184062461 G A FAM131A Silent p.P268P 0.34 TCGA-L5-A4OI-01 3 184104414 184104414 G A CHRD Silent p.A689A 0.62 TCGA-L5-A4OI-01 3 184798416 184798416 T C C3orf70 3'UTR 0.27 TCGA-L5-A4OI-01 3 185434550 185434550 G A C3orf65 Missense_Mutation p.G128E 0.30 probably_damaging(0.969) TCGA-L5-A4OI-01 3 187439174 187439175 - T BCL6 3'UTR 0.44 TCGA-L5-A4OI-01 3 188593920 188593921 - T LPP 3'UTR 0.21 TCGA-L5-A4OI-01 3 19190243 19190243 A - KCNH8 Frame_Shift_Del p.N12Tfs*31 0.30 TCGA-L5-A4OI-01 3 194061743 194061743 G A CPN2 3'UTR 0.38 TCGA-L5-A4OI-01 3 195594633 195594633 G - TNK2 Frame_Shift_Del p.Q909Rfs*2 0.57 TCGA-L5-A4OI-01 3 195777822 195777823 - A TFRC 3'UTR 0.39 TCGA-L5-A4OI-01 3 195934356 195934356 G A ZDHHC19 Silent p.S200S 0.59 TCGA-L5-A4OI-01 3 196089199 196089199 T - UBXN7 Frame_Shift_Del p.A399Qfs*4 0.33 TCGA-L5-A4OI-01 3 196214437 196214437 G A RNF168 Nonsense_Mutation p.R131* 0.38 TCGA-L5-A4OI-01 3 197428645 197428645 A G KIAA0226 Missense_Mutation p.Y221H 0.29 tolerated(0.53) benign(0.001) TCGA-L5-A4OI-01 3 197748396 197748396 C A LMLN Missense_Mutation p.P519H 0.52 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OI-01 3 21465453 21465454 - C ZNF385D Splice_Site p.X318_splice 0.29 TCGA-L5-A4OI-01 3 23932118 23932118 A G UBE2E1 3'UTR 0.43 TCGA-L5-A4OI-01 3 27352478 27352478 C A NEK10 Missense_Mutation p.D200Y 0.48 deleterious(0) benign(0.264) TCGA-L5-A4OI-01 3 27761750 27761750 G A EOMES Silent p.F316F 0.38 TCGA-L5-A4OI-01 3 31677497 31677497 T C STT3B Missense_Mutation p.Y808H 0.38 tolerated_low_confidence(0.42) benign(0.001) TCGA-L5-A4OI-01 3 3192545 3192545 C T CRBN 3'UTR 0.31 TCGA-L5-A4OI-01 3 32933489 32933489 T - TRIM71 3'UTR 0.34 TCGA-L5-A4OI-01 3 38040859 38040859 G T VILL Missense_Mutation p.G371C 0.26 deleterious(0.03) possibly_damaging(0.687) TCGA-L5-A4OI-01 3 38949441 38949441 T - SCN11A Frame_Shift_Del p.K491Sfs*5 0.24 TCGA-L5-A4OI-01 3 42264488 42264488 G A TRAK1 Silent p.T707T 0.47 TCGA-L5-A4OI-01 3 42659102 42659102 A - NKTR Frame_Shift_Del p.T35Hfs*38 0.30 TCGA-L5-A4OI-01 3 439987 439987 G T CHL1 Nonsense_Mutation p.E1058* 0.50 TCGA-L5-A4OI-01 3 44283666 44283666 G A TOPAZ1 Missense_Mutation p.G41R 0.53 tolerated_low_confidence(0.74) benign(0.004) TCGA-L5-A4OI-01 3 44286737 44286737 A - TOPAZ1 Frame_Shift_Del p.E916Nfs*6 0.31 TCGA-L5-A4OI-01 3 45000845 45000845 G - ZDHHC3 Frame_Shift_Del p.Y29Tfs*39 0.32 TCGA-L5-A4OI-01 3 46417157 46417157 G - CCR5 3'UTR 0.33 TCGA-L5-A4OI-01 3 46943307 46943307 C T PTH1R Missense_Mutation p.R390W 0.29 tolerated(0.11) benign(0.079) TCGA-L5-A4OI-01 3 47041439 47041439 T A NBEAL2 Missense_Mutation p.W1284R 0.50 deleterious(0) possibly_damaging(0.677) TCGA-L5-A4OI-01 3 47045373 47045373 A G NBEAL2 Missense_Mutation p.T1930A 0.53 deleterious(0) probably_damaging(0.915) TCGA-L5-A4OI-01 3 47462072 47462072 C T SCAP Missense_Mutation p.R512H 0.30 deleterious(0.04) benign(0.081) TCGA-L5-A4OI-01 3 48454262 48454262 G A PLXNB1 Silent p.R1581R 0.32 TCGA-L5-A4OI-01 3 48616352 48616352 G A COL7A1 Silent p.D1808D 0.48 TCGA-L5-A4OI-01 3 48637505 48637505 G A UQCRC1 Silent p.S431S 0.38 TCGA-L5-A4OI-01 3 48697857 48697858 AG - CELSR3 Frame_Shift_Del p.S737Cfs*13 0.26 TCGA-L5-A4OI-01 3 49139122 49139122 G A QARS Silent p.T240T 0.42 TCGA-L5-A4OI-01 3 49706725 49706726 TC - BSN 3'UTR 0.49 TCGA-L5-A4OI-01 3 49724603 49724603 C T MST1 Missense_Mutation p.G196S 0.39 tolerated(0.08) benign(0.244) TCGA-L5-A4OI-01 3 49947762 49947762 T G MON1A Missense_Mutation p.D487A 0.32 tolerated(0.28) possibly_damaging(0.736) TCGA-L5-A4OI-01 3 50099450 50099450 A - RBM6 Frame_Shift_Del p.K834Nfs*27 0.37 TCGA-L5-A4OI-01 3 50226175 50226175 G A SEMA3F 3'UTR 0.32 TCGA-L5-A4OI-01 3 50294248 50294248 C T GNAI2 Silent p.S229S 0.43 TCGA-L5-A4OI-01 3 50330413 50330413 T C HYAL3 3'UTR 0.46 TCGA-L5-A4OI-01 3 50400264 50400264 G A CACNA2D2 3'Flank 0.29 TCGA-L5-A4OI-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.46 TCGA-L5-A4OI-01 3 52021444 52021444 G - ACY1 Frame_Shift_Del p.R276Lfs*28 0.36 TCGA-L5-A4OI-01 3 52431015 52431015 C T DNAH1 Silent p.S3914S 0.57 TCGA-L5-A4OI-01 3 52474799 52474799 G A SEMA3G Silent p.L323L 0.46 TCGA-L5-A4OI-01 3 52507760 52507760 G A NISCH Missense_Mutation p.C227Y 0.36 deleterious(0) probably_damaging(0.963) TCGA-L5-A4OI-01 3 52538076 52538076 G A STAB1 Missense_Mutation p.G352E 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OI-01 3 52551565 52551565 G T STAB1 Splice_Site p.X1522_splice 0.34 TCGA-L5-A4OI-01 3 52662977 52662977 G A PBRM1 Missense_Mutation p.A459V 0.38 deleterious(0) probably_damaging(0.931) TCGA-L5-A4OI-01 3 53381515 53381517 CTC - DCP1A In_Frame_Del p.E10del 0.37 TCGA-L5-A4OI-01 3 53919272 53919272 G A SELK 3'UTR 0.33 TCGA-L5-A4OI-01 3 54958868 54958868 C A LRTM1 Missense_Mutation p.D128Y 0.47 deleterious(0.02) possibly_damaging(0.682) TCGA-L5-A4OI-01 3 55500900 55500900 T - WNT5A 3'UTR 0.31 TCGA-L5-A4OI-01 3 55503989 55503989 A - WNT5A 3'UTR 0.34 TCGA-L5-A4OI-01 3 57131680 57131680 G A IL17RD Missense_Mutation p.T684M 0.29 tolerated_low_confidence(0.12) benign(0.008) TCGA-L5-A4OI-01 3 57132270 57132270 G A IL17RD Silent p.D487D 0.29 TCGA-L5-A4OI-01 3 57276921 57276921 A - APPL1 Frame_Shift_Del p.R154Efs*6 0.36 TCGA-L5-A4OI-01 3 58382896 58382896 G A PXK Missense_Mutation p.R318Q 0.45 deleterious(0) possibly_damaging(0.82) TCGA-L5-A4OI-01 3 64008326 64008326 C T PSMD6 Intron 0.41 TCGA-L5-A4OI-01 3 64672616 64672616 G A ADAMTS9 Silent p.Y48Y 0.30 TCGA-L5-A4OI-01 3 68593789 68593789 C T FAM19A1 3'UTR 0.45 TCGA-L5-A4OI-01 3 69025962 69025962 A - EOGT 3'UTR 0.29 TCGA-L5-A4OI-01 3 69788686 69788686 C A MITF 5'UTR 0.36 TCGA-L5-A4OI-01 3 71026132 71026132 C T FOXP1 Missense_Mutation p.R499Q 0.11 deleterious(0.01) probably_damaging(0.967) TCGA-L5-A4OI-01 3 71733663 71733663 C - EIF4E3 3'UTR 0.36 TCGA-L5-A4OI-01 3 77623815 77623815 C T ROBO2 Missense_Mutation p.R729W 0.38 deleterious(0) probably_damaging(0.962) TCGA-L5-A4OI-01 3 78647116 78647116 A G ROBO1 3'UTR 0.44 TCGA-L5-A4OI-01 3 78717365 78717365 C T ROBO1 Missense_Mutation p.S573N 0.47 deleterious(0.02) benign(0.011) TCGA-L5-A4OI-01 3 81635292 81635292 C - GBE1 Frame_Shift_Del p.G429Vfs*7 0.33 TCGA-L5-A4OI-01 3 88104473 88104473 T - CGGBP1 3'UTR 0.61 TCGA-L5-A4OI-01 3 97596787 97596787 A - CRYBG3 Frame_Shift_Del p.G304Efs*25 0.29 TCGA-L5-A4OI-01 3 9768856 9768856 C T CPNE9 Missense_Mutation p.R488W 0.33 deleterious(0) probably_damaging(0.912) TCGA-L5-A4OI-01 3 9825804 9825804 G A TADA3 Silent p.S338S 0.44 TCGA-L5-A4OI-01 3 9962221 9962221 T C IL17RC Missense_Mutation p.V242A 0.46 deleterious(0.01) probably_damaging(0.952) TCGA-L5-A4OI-01 4 101111147 101111147 C T DDIT4L 5'UTR 0.38 TCGA-L5-A4OI-01 4 1018800 1018800 C A FGFRL1 Missense_Mutation p.L394M 0.30 tolerated(0.12) benign(0.002) TCGA-L5-A4OI-01 4 101944797 101944797 T - PPP3CA 3'UTR 0.26 TCGA-L5-A4OI-01 4 103533682 103533682 G A NFKB1 Silent p.A837A 0.38 TCGA-L5-A4OI-01 4 104640371 104640371 G A TACR3 Silent p.G154G 0.51 TCGA-L5-A4OI-01 4 106160197 106160197 A G TET2 Intron 0.45 TCGA-L5-A4OI-01 4 106161224 106161224 C - TET2 Intron 0.34 TCGA-L5-A4OI-01 4 106163105 106163111 TTTTTTC - TET2 Intron 0.31 TCGA-L5-A4OI-01 4 106163651 106163651 A - TET2 Intron 0.23 TCGA-L5-A4OI-01 4 106892814 106892814 A G NPNT 3'Flank 0.42 TCGA-L5-A4OI-01 4 107156505 107156505 T - TBCK Frame_Shift_Del p.N457Tfs*15 0.43 TCGA-L5-A4OI-01 4 108866275 108866275 G A CYP2U1 Missense_Mutation p.G214R 0.38 deleterious(0.04) possibly_damaging(0.643) TCGA-L5-A4OI-01 4 110452575 110452575 A G SEC24B Missense_Mutation p.D1096G 0.31 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OI-01 4 113191137 113191138 - T AP1AR 3'UTR 0.25 TCGA-L5-A4OI-01 4 113435994 113435994 G A NEUROG2 Missense_Mutation p.T213M 0.53 deleterious(0.04) possibly_damaging(0.63) TCGA-L5-A4OI-01 4 114280135 114280135 G - ANK2 Frame_Shift_Del p.G3456Afs*20 0.30 TCGA-L5-A4OI-01 4 115767053 115767053 C T NDST4 Missense_Mutation p.A681T 0.35 tolerated(0.26) benign(0.196) TCGA-L5-A4OI-01 4 118005607 118005607 A C TRAM1L1 Missense_Mutation p.L315V 0.37 deleterious(0) possibly_damaging(0.507) TCGA-L5-A4OI-01 4 119736808 119736808 T C SEC24D Silent p.R157R 0.33 TCGA-L5-A4OI-01 4 119948130 119948130 C T SYNPO2 Silent p.S202S 0.40 TCGA-L5-A4OI-01 4 119951528 119951528 C T SYNPO2 Missense_Mutation p.T533M 0.45 tolerated(0.39) benign(0.01) TCGA-L5-A4OI-01 4 1208132 1208132 T C CTBP1 Missense_Mutation p.S298G 0.05 tolerated(0.11) benign(0.015) TCGA-L5-A4OI-01 4 120982060 120982060 C T MAD2L1 Silent p.T138T 0.35 TCGA-L5-A4OI-01 4 122250816 122250816 C T QRFPR Missense_Mutation p.V317M 0.40 deleterious(0) possibly_damaging(0.903) TCGA-L5-A4OI-01 4 122254190 122254190 C A QRFPR Nonsense_Mutation p.E195* 0.43 TCGA-L5-A4OI-01 4 122854106 122854106 T C TRPC3 Missense_Mutation p.N103D 0.38 deleterious(0.04) benign(0.04) TCGA-L5-A4OI-01 4 123333870 123333870 A G ADAD1 Silent p.S385S 0.42 TCGA-L5-A4OI-01 4 123342478 123342478 G A ADAD1 Missense_Mutation p.R517Q 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 4 1244539 1244539 G A CTBP1 5'Flank 0.40 TCGA-L5-A4OI-01 4 125593559 125593559 C T ANKRD50 Missense_Mutation p.M291I 0.23 deleterious(0.01) benign(0.013) TCGA-L5-A4OI-01 4 129752963 129752963 G A JADE1 Missense_Mutation p.G17D 0.32 tolerated(0.86) benign(0.026) TCGA-L5-A4OI-01 4 134071772 134071772 C T PCDH10 Silent p.Y159Y 0.46 TCGA-L5-A4OI-01 4 13485815 13485842 GAAGGGAAGGATGAAGGCTCCGGGGGCG AAGGGAAGGATGAAGGCTCCGGGGGC RAB28 5'UTR 0.08 TCGA-L5-A4OI-01 4 13485842 13485842 G - RAB28 5'UTR 0.19 TCGA-L5-A4OI-01 4 141471582 141471582 T C ELMOD2 3'UTR 0.22 TCGA-L5-A4OI-01 4 144793231 144793231 C A GYPE 3'UTR 0.40 TCGA-L5-A4OI-01 4 145658978 145658978 A - HHIP Frame_Shift_Del p.G660Dfs*17 0.34 TCGA-L5-A4OI-01 4 146033434 146033434 C T ABCE1 Missense_Mutation p.R252C 0.32 deleterious(0) probably_damaging(0.933) TCGA-L5-A4OI-01 4 146058514 146058514 T - OTUD4 3'UTR 0.89 TCGA-L5-A4OI-01 4 149001709 149001709 T - NR3C2 3'UTR 0.24 TCGA-L5-A4OI-01 4 151177234 151177234 G C DCLK2 Missense_Mutation p.R729S 0.43 tolerated_low_confidence(0.27) benign(0.025) TCGA-L5-A4OI-01 4 151203623 151203623 C A LRBA Missense_Mutation p.M2776I 0.33 tolerated(0.12) benign(0) TCGA-L5-A4OI-01 4 151511862 151511862 T C LRBA Intron 0.28 TCGA-L5-A4OI-01 4 153247289 153247289 G A FBXW7 Missense_Mutation p.R505C 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 4 154701874 154701874 T C SFRP2 3'UTR 0.45 TCGA-L5-A4OI-01 4 155411314 155411314 G A DCHS2 Silent p.R398R 0.42 TCGA-L5-A4OI-01 4 155457804 155457804 A - PLRG1 3'UTR 0.62 TCGA-L5-A4OI-01 4 155508040 155508040 G A FGA Nonsense_Mutation p.R181* 0.39 TCGA-L5-A4OI-01 4 155665742 155665742 G A LRAT Silent p.T88T 0.59 TCGA-L5-A4OI-01 4 155749056 155749056 C - RBM46 Frame_Shift_Del p.P481Lfs*68 0.23 TCGA-L5-A4OI-01 4 156135406 156135406 G A NPY2R Silent p.P105P 0.43 TCGA-L5-A4OI-01 4 156136716 156136716 T - NPY2R 3'UTR 0.30 TCGA-L5-A4OI-01 4 156632032 156632032 T C GUCY1A3 Missense_Mutation p.C239R 0.35 tolerated(0.52) benign(0.001) TCGA-L5-A4OI-01 4 157688926 157688926 T G PDGFC Missense_Mutation p.E307A 0.45 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 4 158285111 158285112 - A GRIA2 3'UTR 0.39 TCGA-L5-A4OI-01 4 159642600 159642600 C T PPID Missense_Mutation p.V41I 0.30 deleterious(0.02) possibly_damaging(0.509) TCGA-L5-A4OI-01 4 166946529 166946529 C T TLL1 Silent p.G368G 0.34 TCGA-L5-A4OI-01 4 167022771 167022771 T - TLL1 3'UTR 0.42 TCGA-L5-A4OI-01 4 167023445 167023445 T - TLL1 3'UTR 0.33 TCGA-L5-A4OI-01 4 170641594 170641594 T - CLCN3 3'UTR 0.50 TCGA-L5-A4OI-01 4 174254086 174254086 G A HMGB2 Silent p.G119G 0.29 TCGA-L5-A4OI-01 4 175238975 175238975 T G CEP44 Intron 0.39 TCGA-L5-A4OI-01 4 17634191 17634191 C T FAM184B Silent p.P1049P 0.41 TCGA-L5-A4OI-01 4 17634192 17634192 G A FAM184B Missense_Mutation p.P1049L 0.30 tolerated(0.23) benign(0.029) TCGA-L5-A4OI-01 4 17634266 17634266 T - MED28 3'UTR 0.29 TCGA-L5-A4OI-01 4 177058691 177058691 G - WDR17 Frame_Shift_Del p.G455Efs*42 0.27 TCGA-L5-A4OI-01 4 17711179 17711179 G A FAM184B Missense_Mutation p.A77V 0.30 tolerated(0.17) benign(0.019) TCGA-L5-A4OI-01 4 183722250 183722250 T - TENM3 3'UTR 0.29 TCGA-L5-A4OI-01 4 184572382 184572382 A - RWDD4 Frame_Shift_Del p.F68Lfs*9 0.32 TCGA-L5-A4OI-01 4 186188132 186188132 C T SNX25 Missense_Mutation p.P141L 0.42 deleterious(0) possibly_damaging(0.817) TCGA-L5-A4OI-01 4 186267693 186267693 C T SNX25 Silent p.C566C 0.37 TCGA-L5-A4OI-01 4 186583327 186583327 A G SORBS2 Missense_Mutation p.S109P 0.46 tolerated(0.05) probably_damaging(0.998) TCGA-L5-A4OI-01 4 20530701 20530701 T C SLIT2 Missense_Mutation p.I531T 0.62 deleterious(0) possibly_damaging(0.826) TCGA-L5-A4OI-01 4 20618777 20618778 - C SLIT2 Frame_Shift_Ins p.L1366Pfs*3 0.36 TCGA-L5-A4OI-01 4 23796678 23796678 G A PPARGC1A 3'UTR 0.46 TCGA-L5-A4OI-01 4 24810041 24810041 G A CCDC149 Silent p.G520G 0.52 TCGA-L5-A4OI-01 4 25780793 25780793 C T SEL1L3 Silent p.A830A 0.45 TCGA-L5-A4OI-01 4 26417198 26417198 C T RBPJ Missense_Mutation p.P99L 0.47 tolerated(0.47) benign(0.013) TCGA-L5-A4OI-01 4 2939958 2939958 A - NOP14 3'UTR 0.37 TCGA-L5-A4OI-01 4 2950039 2950039 G A NOP14 Missense_Mutation p.P460L 0.38 tolerated(0.17) probably_damaging(0.998) TCGA-L5-A4OI-01 4 2950090 2950090 G A NOP14 Missense_Mutation p.S443L 0.42 tolerated(0.05) benign(0.426) TCGA-L5-A4OI-01 4 2952780 2952780 A - NOP14 Intron 0.42 TCGA-L5-A4OI-01 4 30723074 30723074 G A PCDH7 Silent p.A10A 0.32 TCGA-L5-A4OI-01 4 3127292 3127294 AGA - HTT In_Frame_Del p.E449del 0.42 TCGA-L5-A4OI-01 4 3158915 3158915 G A HTT Missense_Mutation p.A1248T 0.28 probably_damaging(0.999) TCGA-L5-A4OI-01 4 36160352 36160352 C A ARAP2 Nonsense_Mutation p.E918* 0.32 TCGA-L5-A4OI-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.28 TCGA-L5-A4OI-01 4 38690547 38690547 G A KLF3 Silent p.R133R 0.36 TCGA-L5-A4OI-01 4 39206803 39206804 - T WDR19 Frame_Shift_Ins p.L214Ffs*5 0.51 TCGA-L5-A4OI-01 4 39482010 39482010 C T LIAS 3'Flank 0.20 TCGA-L5-A4OI-01 4 41634825 41634825 C T LIMCH1 Intron 0.40 TCGA-L5-A4OI-01 4 41746863 41746863 A - PHOX2B 3'UTR 0.33 TCGA-L5-A4OI-01 4 4285408 4285408 T C LYAR Missense_Mutation p.H21R 0.31 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 4 44176239 44176239 T - KCTD8 3'UTR 0.46 TCGA-L5-A4OI-01 4 44177100 44177100 G A KCTD8 Nonsense_Mutation p.Q377* 0.09 TCGA-L5-A4OI-01 4 46042484 46042484 C T GABRG1 3'UTR 0.42 TCGA-L5-A4OI-01 4 47427773 47427773 G A GABRB1 Missense_Mutation p.S388N 0.35 tolerated(0.45) benign(0.008) TCGA-L5-A4OI-01 4 48499788 48499788 A - FRYL 3'UTR 0.37 TCGA-L5-A4OI-01 4 4864475 4864475 C T MSX1 Missense_Mutation p.R173C 0.57 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 4 48859372 48859372 A - OCIAD1 Frame_Shift_Del p.E233Kfs*4 0.35 TCGA-L5-A4OI-01 4 48887522 48887522 G T OCIAD2 Missense_Mutation p.D148E 0.15 tolerated(0.07) benign(0.001) TCGA-L5-A4OI-01 4 52860637 52860637 C T LRRC66 Missense_Mutation p.V851I 0.29 tolerated(1) benign(0.001) TCGA-L5-A4OI-01 4 54876128 54876132 AAAAC - CHIC2 3'UTR 0.24 TCGA-L5-A4OI-01 4 55561889 55561889 C T KIT Silent p.G93G 0.43 TCGA-L5-A4OI-01 4 5617231 5617231 C T EVC2 Missense_Mutation p.S916N 0.28 tolerated(0.62) benign(0.017) TCGA-L5-A4OI-01 4 57189670 57189670 G A KIAA1211 Silent p.A1105A 0.30 TCGA-L5-A4OI-01 4 57209044 57209044 C T AASDH Missense_Mutation p.C955Y 0.48 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OI-01 4 5812846 5812846 C T EVC 3'UTR 0.42 TCGA-L5-A4OI-01 4 5982016 5982016 G A C4orf50 Missense_Mutation p.A492V 0.35 tolerated(1) benign(0.019) TCGA-L5-A4OI-01 4 6719287 6719288 TG - BLOC1S4 3'UTR 0.36 TCGA-L5-A4OI-01 4 68566794 68566794 G A UBA6 Missense_Mutation p.A15V 0.38 deleterious(0.02) possibly_damaging(0.692) TCGA-L5-A4OI-01 4 6885041 6885041 T - KIAA0232 3'UTR 0.26 TCGA-L5-A4OI-01 4 7043578 7043578 G A CCDC96 Missense_Mutation p.A363V 0.40 deleterious(0.04) benign(0.195) TCGA-L5-A4OI-01 4 71840885 71840885 G A MOB1B Nonsense_Mutation p.W102* 0.34 TCGA-L5-A4OI-01 4 75041109 75041109 T C MTHFD2L Missense_Mutation p.L147S 0.10 deleterious(0) probably_damaging(0.984) TCGA-L5-A4OI-01 4 76569363 76569363 A - G3BP2 3'UTR 0.32 TCGA-L5-A4OI-01 4 77936159 77936159 G A SEPT11 Missense_Mutation p.A226T 0.32 tolerated(0.36) benign(0.322) TCGA-L5-A4OI-01 4 7870447 7870447 C A AFAP1 Splice_Site p.X43_splice 0.42 TCGA-L5-A4OI-01 4 79173632 79173632 G A FRAS1 Silent p.P132P 0.44 TCGA-L5-A4OI-01 4 79350351 79350351 C T FRAS1 Missense_Mutation p.A1605V 0.41 benign(0.001) TCGA-L5-A4OI-01 4 79371317 79371317 G A FRAS1 Missense_Mutation p.R2096H 0.36 benign(0.002) TCGA-L5-A4OI-01 4 79393390 79393390 C T FRAS1 Silent p.D2476D 0.24 TCGA-L5-A4OI-01 4 80827192 80827192 C T ANTXR2 3'UTR 0.42 TCGA-L5-A4OI-01 4 80898696 80898696 T - ANTXR2 3'Flank 0.35 TCGA-L5-A4OI-01 4 8293255 8293255 C T HTRA3 Silent p.S289S 0.48 TCGA-L5-A4OI-01 4 83278549 83278549 C T HNRNPD Missense_Mutation p.G224R 0.29 deleterious(0) possibly_damaging(0.904) TCGA-L5-A4OI-01 4 84519291 84519291 A G AGPAT9 Missense_Mutation p.I362V 0.49 tolerated(0.09) benign(0.006) TCGA-L5-A4OI-01 4 86938312 86938319 GTCTGCGT CTGC MAPK10 3'UTR 0.28 TCGA-L5-A4OI-01 4 87028501 87028501 C T MAPK10 Missense_Mutation p.A81T 0.42 deleterious(0.01) possibly_damaging(0.891) TCGA-L5-A4OI-01 4 884355 884355 G - GAK Frame_Shift_Del p.P349Lfs*71 0.35 TCGA-L5-A4OI-01 4 88903739 88903739 C T SPP1 Silent p.N212N 0.35 TCGA-L5-A4OI-01 4 89189444 89189444 C - PPM1K Frame_Shift_Del p.Q251Sfs*4 0.28 TCGA-L5-A4OI-01 4 89189962 89189962 A - PPM1K Frame_Shift_Del p.L213Cfs*8 0.32 TCGA-L5-A4OI-01 4 89708944 89708946 GGC - FAM13A In_Frame_Del p.R410del 0.42 TCGA-L5-A4OI-01 4 90647546 90647546 A - SNCA 3'UTR 0.16 TCGA-L5-A4OI-01 4 91389480 91389480 C T CCSER1 Missense_Mutation p.P567S 0.47 tolerated(0.53) benign(0.003) TCGA-L5-A4OI-01 4 95173910 95173910 A - SMARCAD1 Frame_Shift_Del p.N347Mfs*24 0.40 TCGA-L5-A4OI-01 4 96140293 96140294 - G UNC5C Frame_Shift_Ins p.Q491Pfs*3 0.35 TCGA-L5-A4OI-01 4 9785349 9785349 G C DRD5 3'UTR 0.31 TCGA-L5-A4OI-01 4 9785366 9785366 T A DRD5 3'UTR 0.11 TCGA-L5-A4OI-01 4 9785421 9785421 G T DRD5 3'UTR 0.16 TCGA-L5-A4OI-01 4 985254 985254 C T SLC26A1 Missense_Mutation p.G80S 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 4 99806094 99806094 C T EIF4E Missense_Mutation p.R204K 0.39 tolerated(0.3) benign(0.002) TCGA-L5-A4OI-01 5 102612501 102612501 A - C5orf30 3'UTR 0.28 TCGA-L5-A4OI-01 5 108691648 108691648 C T PJA2 Missense_Mutation p.A578T 0.32 deleterious(0.03) possibly_damaging(0.841) TCGA-L5-A4OI-01 5 112154722 112154722 G A APC Silent p.S331S 0.36 TCGA-L5-A4OI-01 5 114879215 114879218 TTTA - FEM1C 5'UTR 0.50 TCGA-L5-A4OI-01 5 118809676 118809678 AAG - HSD17B4 In_Frame_Del p.R90del 0.45 TCGA-L5-A4OI-01 5 118865647 118865647 C T HSD17B4 Missense_Mutation p.S634F 0.48 deleterious(0.01) possibly_damaging(0.48) TCGA-L5-A4OI-01 5 121187966 121187966 G A FTMT Missense_Mutation p.R103Q 0.35 tolerated(0.06) benign(0.402) TCGA-L5-A4OI-01 5 1253739 1253739 G A TERT 3'UTR 0.14 TCGA-L5-A4OI-01 5 127523693 127523693 T C SLC12A2 3'UTR 0.36 TCGA-L5-A4OI-01 5 127594064 127594065 AA - FBN2 3'UTR 0.38 TCGA-L5-A4OI-01 5 127594651 127594651 A - FBN2 3'UTR 0.32 TCGA-L5-A4OI-01 5 127607801 127607801 T C FBN2 Missense_Mutation p.E2617G 0.54 deleterious(0) possibly_damaging(0.574) TCGA-L5-A4OI-01 5 127638705 127638705 G A FBN2 Silent p.C1959C 0.55 TCGA-L5-A4OI-01 5 127873215 127873215 C T FBN2 Missense_Mutation p.G28S 0.50 tolerated_low_confidence(0.45) unknown(0) TCGA-L5-A4OI-01 5 130979639 130979639 A - FNIP1 3'Flank 0.44 TCGA-L5-A4OI-01 5 131607782 131607782 G A PDLIM4 Missense_Mutation p.G285S 0.46 tolerated(0.05) probably_damaging(0.974) TCGA-L5-A4OI-01 5 131944382 131944382 A - RAD50 Frame_Shift_Del p.N934Ifs*6 0.41 TCGA-L5-A4OI-01 5 1339037 1339037 C T CLPTM1L Missense_Mutation p.M179I 0.32 deleterious(0.02) benign(0.06) TCGA-L5-A4OI-01 5 136476303 136476303 C T SPOCK1 Missense_Mutation p.A105T 0.35 deleterious(0) possibly_damaging(0.746) TCGA-L5-A4OI-01 5 136957381 136957381 G A KLHL3 3'UTR 0.47 TCGA-L5-A4OI-01 5 137451362 137451362 T - NME5 3'UTR 0.39 TCGA-L5-A4OI-01 5 13751302 13751302 G T DNAH5 Missense_Mutation p.P3699H 0.21 probably_damaging(0.971) TCGA-L5-A4OI-01 5 137673786 137673786 C A FAM53C 5'UTR 0.44 TCGA-L5-A4OI-01 5 137804270 137804270 G - EGR1 3'UTR 0.28 TCGA-L5-A4OI-01 5 138729809 138729809 C T PROB1 Missense_Mutation p.R321H 0.61 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OI-01 5 139781739 139781739 G A ANKHD1 Missense_Mutation p.G63S 0.35 unknown(0) TCGA-L5-A4OI-01 5 140167669 140167669 C T PCDHA1 Silent p.D598D 0.45 TCGA-L5-A4OI-01 5 140167774 140167774 G A PCDHA1 Silent p.T633T 0.44 TCGA-L5-A4OI-01 5 140180927 140180927 G A PCDHA3 Missense_Mutation p.A49T 0.39 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-L5-A4OI-01 5 140182156 140182156 C T PCDHA3 Silent p.S458S 0.46 TCGA-L5-A4OI-01 5 140182706 140182706 G A PCDHA3 Missense_Mutation p.A642T 0.40 tolerated_low_confidence(0.06) benign(0.16) TCGA-L5-A4OI-01 5 140221181 140221181 G A PCDHA8 Missense_Mutation p.R92H 0.41 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-L5-A4OI-01 5 140223137 140223137 C T PCDHA8 Missense_Mutation p.A744V 0.49 deleterious_low_confidence(0.02) benign(0.181) TCGA-L5-A4OI-01 5 140229984 140229984 G A PCDHA9 Missense_Mutation p.R635H 0.40 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-L5-A4OI-01 5 140250122 140250122 G A PCDHA11 Silent p.A478A 0.41 TCGA-L5-A4OI-01 5 140250469 140250469 G A PCDHA11 Missense_Mutation p.R594H 0.33 tolerated_low_confidence(0.07) possibly_damaging(0.724) TCGA-L5-A4OI-01 5 140256774 140256774 G A PCDHA12 Missense_Mutation p.A573T 0.43 tolerated_low_confidence(0.4) benign(0.007) TCGA-L5-A4OI-01 5 140391541 140391542 - A PCDHAC1 3'UTR 0.38 TCGA-L5-A4OI-01 5 140502487 140502487 A - PCDHB4 Frame_Shift_Del p.K305Nfs*12 0.35 TCGA-L5-A4OI-01 5 140503236 140503236 C T PCDHB4 Silent p.D552D 0.40 TCGA-L5-A4OI-01 5 140595235 140595235 T C PCDHB13 Missense_Mutation p.F514L 0.05 deleterious_low_confidence(0) benign(0.15) TCGA-L5-A4OI-01 5 140699768 140699768 A G TAF7 5'UTR 0.39 TCGA-L5-A4OI-01 5 140712338 140712338 C T PCDHGA1 Missense_Mutation p.A696V 0.50 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-L5-A4OI-01 5 140744613 140744613 C T PCDHGA5 Missense_Mutation p.A239V 0.33 deleterious_low_confidence(0.02) benign(0.023) TCGA-L5-A4OI-01 5 140750891 140750892 AG - PCDHGB3 Frame_Shift_Del p.D313* 0.46 TCGA-L5-A4OI-01 5 140784404 140784404 G A PCDHGA9 Missense_Mutation p.A629T 0.38 tolerated_low_confidence(0.06) possibly_damaging(0.511) TCGA-L5-A4OI-01 5 140787976 140787976 C T PCDHGB6 Silent p.S69S 0.36 TCGA-L5-A4OI-01 5 140801619 140801619 C T PCDHGA11 Silent p.N275N 0.25 TCGA-L5-A4OI-01 5 140801720 140801721 - T PCDHGA11 Frame_Shift_Ins p.E311* 0.26 TCGA-L5-A4OI-01 5 140802149 140802149 T - PCDHGA11 Frame_Shift_Del p.P454Lfs*22 0.32 TCGA-L5-A4OI-01 5 140810542 140810542 G A PCDHGA12 Silent p.T72T 0.47 TCGA-L5-A4OI-01 5 140857922 140857922 G A PCDHGC3 Missense_Mutation p.V747M 0.27 tolerated(0.07) possibly_damaging(0.803) TCGA-L5-A4OI-01 5 140894714 140894714 C T DIAPH1 3'UTR 0.35 TCGA-L5-A4OI-01 5 141005807 141005807 C T HDAC3 Missense_Mutation p.V292M 0.53 tolerated(0.2) probably_damaging(0.982) TCGA-L5-A4OI-01 5 141243705 141243705 G A PCDH1 Missense_Mutation p.R731C 0.69 deleterious(0.04) possibly_damaging(0.827) TCGA-L5-A4OI-01 5 14419946 14419946 C T TRIO Silent p.N1673N 0.63 TCGA-L5-A4OI-01 5 145647320 145647320 A - RBM27 Frame_Shift_Del p.K816Nfs*5 0.40 TCGA-L5-A4OI-01 5 145719656 145719656 G A POU4F3 Silent p.S222S 0.36 TCGA-L5-A4OI-01 5 145886723 145886723 A - TCERG1 Frame_Shift_Del p.K957Rfs*17 0.53 TCGA-L5-A4OI-01 5 147162215 147162217 GGC - JAKMIP2 5'UTR 0.18 TCGA-L5-A4OI-01 5 148630032 148630032 C A ABLIM3 Silent p.A584A 0.42 TCGA-L5-A4OI-01 5 148980676 148980676 G A ARHGEF37 Silent p.P64P 0.32 TCGA-L5-A4OI-01 5 149360003 149360003 G A SLC26A2 Missense_Mutation p.V283M 0.38 tolerated(0.2) possibly_damaging(0.756) TCGA-L5-A4OI-01 5 149493445 149493445 A - PDGFRB 3'UTR 0.47 TCGA-L5-A4OI-01 5 149513315 149513315 C T PDGFRB Silent p.R256R 0.27 TCGA-L5-A4OI-01 5 150027558 150027558 G A SYNPO Silent p.A151A 0.38 TCGA-L5-A4OI-01 5 150883731 150883732 CA - FAT2 3'UTR 0.13 TCGA-L5-A4OI-01 5 151041678 151041681 TGAA - SPARC 3'UTR 0.33 TCGA-L5-A4OI-01 5 153789185 153789185 G A GALNT10 Missense_Mutation p.A417T 0.32 tolerated(0.43) benign(0.006) TCGA-L5-A4OI-01 5 154397192 154397192 T - KIF4B 3'UTR 0.36 TCGA-L5-A4OI-01 5 159776091 159776091 C - C1QTNF2 3'UTR 0.34 TCGA-L5-A4OI-01 5 160067536 160067536 C T ATP10B Missense_Mutation p.R311Q 0.31 deleterious(0.03) possibly_damaging(0.474) TCGA-L5-A4OI-01 5 161300245 161300246 - T GABRA1 Frame_Shift_Ins p.H129Pfs*37 0.19 TCGA-L5-A4OI-01 5 161580287 161580288 - A GABRG2 Frame_Shift_Ins p.M489Nfs*17 0.30 TCGA-L5-A4OI-01 5 172195728 172195728 C T DUSP1 3'UTR 0.37 TCGA-L5-A4OI-01 5 172387036 172387036 G A RPL26L1 Missense_Mutation p.E54K 0.41 deleterious(0.02) benign(0.208) TCGA-L5-A4OI-01 5 172662131 172662131 G A NKX2-5 5'UTR 0.41 TCGA-L5-A4OI-01 5 175936887 175936887 T - FAF2 3'UTR 0.30 TCGA-L5-A4OI-01 5 176008500 176008500 G A CDHR2 Missense_Mutation p.G659S 0.41 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 5 176022699 176022699 C A CDHR2 3'UTR 0.39 TCGA-L5-A4OI-01 5 176070674 176070674 C T EIF4E1B Missense_Mutation p.R79W 0.48 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OI-01 5 176307718 176307718 G A UNC5A 3'UTR 0.43 TCGA-L5-A4OI-01 5 176721015 176721015 G - NSD1 Frame_Shift_Del p.E2217Rfs*77 0.35 TCGA-L5-A4OI-01 5 176721680 176721680 A G NSD1 Silent p.K2437K 0.34 TCGA-L5-A4OI-01 5 179203748 179203748 G A MAML1 3'UTR 0.27 TCGA-L5-A4OI-01 5 179745817 179745817 T C GFPT2 Missense_Mutation p.M312V 0.53 tolerated(0.09) benign(0.002) TCGA-L5-A4OI-01 5 180486694 180486694 C T BTNL9 Silent p.G480G 0.29 TCGA-L5-A4OI-01 5 180662356 180662356 C T TRIM41 3'UTR 0.30 TCGA-L5-A4OI-01 5 19543993 19543993 T C CDH18 Missense_Mutation p.T459A 0.24 tolerated(0.23) benign(0.001) TCGA-L5-A4OI-01 5 26881139 26881139 T A CDH9 3'UTR 0.20 TCGA-L5-A4OI-01 5 32403232 32403232 T C ZFR Missense_Mutation p.T499A 0.27 tolerated(0.49) unknown(0) TCGA-L5-A4OI-01 5 32711876 32711876 C T NPR3 5'UTR 0.57 TCGA-L5-A4OI-01 5 32712514 32712514 G A NPR3 Missense_Mutation p.R211Q 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-L5-A4OI-01 5 33938025 33938025 C T RXFP3 Missense_Mutation p.R394C 0.15 deleterious(0) probably_damaging(0.917) TCGA-L5-A4OI-01 5 33989302 33989302 G A AMACR Missense_Mutation p.H349Y 0.25 deleterious(0.01) probably_damaging(0.976) TCGA-L5-A4OI-01 5 34949704 34949704 A - DNAJC21 Frame_Shift_Del p.K416Sfs*33 0.24 TCGA-L5-A4OI-01 5 35032840 35032840 G A AGXT2 Missense_Mutation p.P256S 0.17 tolerated(0.2) benign(0.068) TCGA-L5-A4OI-01 5 35659190 35659190 G A SPEF2 Missense_Mutation p.V350M 0.22 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OI-01 5 3599698 3599698 C T IRX1 Silent p.G212G 0.19 TCGA-L5-A4OI-01 5 3599713 3599713 C T IRX1 Silent p.A217A 0.27 TCGA-L5-A4OI-01 5 3600309 3600309 T A IRX1 Missense_Mutation p.V416D 0.68 tolerated(0.54) benign(0.047) TCGA-L5-A4OI-01 5 36103453 36103453 A - LMBRD2 3'UTR 0.42 TCGA-L5-A4OI-01 5 36877060 36877060 G A NIPBL 5'UTR 0.14 TCGA-L5-A4OI-01 5 38370435 38370435 C T EGFLAM Missense_Mutation p.R195W 0.17 deleterious_low_confidence(0.02) possibly_damaging(0.846) TCGA-L5-A4OI-01 5 38481086 38481086 A G LIFR 3'UTR 0.28 TCGA-L5-A4OI-01 5 38949530 38949530 C T RICTOR Intron 0.11 TCGA-L5-A4OI-01 5 38953112 38953113 - T RICTOR Frame_Shift_Ins p.Q958Tfs*3 0.44 TCGA-L5-A4OI-01 5 39202773 39202773 C A FYB Missense_Mutation p.S107I 0.66 deleterious(0.02) benign(0.012) TCGA-L5-A4OI-01 5 40693167 40693167 A - PTGER4 3'UTR 0.44 TCGA-L5-A4OI-01 5 44310592 44310592 G A FGF10 Silent p.A122A 0.24 TCGA-L5-A4OI-01 5 45259630 45259630 T - HCN1 3'UTR 0.12 TCGA-L5-A4OI-01 5 45261345 45261345 C T HCN1 3'UTR 0.22 TCGA-L5-A4OI-01 5 45262495 45262495 G A HCN1 Missense_Mutation p.P734L 0.65 tolerated_low_confidence(0.41) benign(0.001) TCGA-L5-A4OI-01 5 45267271 45267271 T A HCN1 Missense_Mutation p.N568I 0.23 deleterious(0) probably_damaging(0.937) TCGA-L5-A4OI-01 5 5140806 5140806 G A ADAMTS16 Silent p.A34A 0.14 TCGA-L5-A4OI-01 5 52781580 52781580 G T FST Intron 0.23 TCGA-L5-A4OI-01 5 54326289 54326289 G A GZMK Silent p.V80V 0.44 TCGA-L5-A4OI-01 5 6449100 6449100 C T UBE2QL1 Missense_Mutation p.H32Y 0.20 tolerated(0.79) benign(0.01) TCGA-L5-A4OI-01 5 65088303 65088303 G A NLN Missense_Mutation p.A450T 0.35 deleterious(0) probably_damaging(0.988) TCGA-L5-A4OI-01 5 68805316 68805316 C T OCLN Silent p.D133D 0.42 TCGA-L5-A4OI-01 5 70766232 70766233 - T BDP1 Frame_Shift_Ins p.L313Ffs*9 0.37 TCGA-L5-A4OI-01 5 71494172 71494172 C T MAP1B Nonsense_Mutation p.R1664* 0.19 TCGA-L5-A4OI-01 5 72207245 72207245 T - TNPO1 3'UTR 0.29 TCGA-L5-A4OI-01 5 72386038 72386038 T - FCHO2 3'UTR 0.30 TCGA-L5-A4OI-01 5 72744084 72744086 TCC - FOXD1 In_Frame_Del p.E34del 0.48 TCGA-L5-A4OI-01 5 72744213 72744213 G A FOXD1 5'UTR 0.42 TCGA-L5-A4OI-01 5 74984889 74984889 T C POC5 Silent p.V359V 0.47 TCGA-L5-A4OI-01 5 76003247 76003247 T - IQGAP2 3'UTR 0.13 TCGA-L5-A4OI-01 5 76028423 76028423 G A F2R Missense_Mutation p.V125I 0.40 tolerated(0.41) benign(0.008) TCGA-L5-A4OI-01 5 76732211 76732212 - A WDR41 Frame_Shift_Ins p.N368* 0.34 TCGA-L5-A4OI-01 5 7695879 7695879 A G ADCY2 Missense_Mutation p.D295G 0.23 deleterious(0.02) probably_damaging(0.98) TCGA-L5-A4OI-01 5 79026843 79026844 - CT CMYA5 Frame_Shift_Ins p.P756Hfs*32 0.59 TCGA-L5-A4OI-01 5 79617569 79617569 T - SPZ1 3'UTR 0.39 TCGA-L5-A4OI-01 5 82786221 82786221 G A VCAN Silent p.A125A 0.41 TCGA-L5-A4OI-01 5 83362376 83362376 G A EDIL3 Missense_Mutation p.A234V 0.43 deleterious(0) probably_damaging(0.983) TCGA-L5-A4OI-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.28 TCGA-L5-A4OI-01 5 89705522 89705522 C T CETN3 5'UTR 0.24 TCGA-L5-A4OI-01 5 90016850 90016850 C T GPR98 Missense_Mutation p.T3241I 0.45 possibly_damaging(0.86) TCGA-L5-A4OI-01 5 90124781 90124781 T - GPR98 Frame_Shift_Del p.F5465Lfs*13 0.45 TCGA-L5-A4OI-01 5 94050578 94050578 T - MCTP1 Frame_Shift_Del p.K875Rfs*4 0.28 TCGA-L5-A4OI-01 5 95297452 95297452 G A ELL2 5'UTR 0.46 TCGA-L5-A4OI-01 5 96098751 96098751 C T ERAP1 3'UTR 0.32 TCGA-L5-A4OI-01 6 100054763 100054763 C T PRDM13 5'UTR 0.57 TCGA-L5-A4OI-01 6 105528822 105528822 A - LIN28B 3'UTR 0.49 TCGA-L5-A4OI-01 6 107076703 107076703 A G RTN4IP1 Missense_Mutation p.M65T 0.18 tolerated(0.17) benign(0.008) TCGA-L5-A4OI-01 6 107100491 107100491 C T QRSL1 Intron 0.30 TCGA-L5-A4OI-01 6 107391188 107391188 C T BEND3 Missense_Mutation p.E403K 0.40 deleterious(0.05) probably_damaging(0.991) TCGA-L5-A4OI-01 6 107391210 107391210 C A BEND3 Missense_Mutation p.Q395H 0.48 tolerated(0.05) probably_damaging(0.919) TCGA-L5-A4OI-01 6 10764373 10764373 T - MAK 3'UTR 0.72 TCGA-L5-A4OI-01 6 109001321 109001321 C T FOXO3 3'UTR 0.45 TCGA-L5-A4OI-01 6 10903158 10903158 A - SYCP2L Frame_Shift_Del p.K203Nfs*12 0.46 TCGA-L5-A4OI-01 6 109814612 109814612 G C AK9 Missense_Mutation p.T1899S 0.42 tolerated(0.08) benign(0.07) TCGA-L5-A4OI-01 6 10995330 10995330 T - ELOVL2 Frame_Shift_Del p.T139Rfs*23 0.16 TCGA-L5-A4OI-01 6 11135718 11135718 C T SMIM13 3'UTR 0.39 TCGA-L5-A4OI-01 6 111710326 111710326 C T REV3L Missense_Mutation p.S282N 0.08 tolerated(0.2) benign(0.002) TCGA-L5-A4OI-01 6 116600626 116600626 T C TSPYL1 Missense_Mutation p.K123R 0.47 tolerated(0.16) benign(0.007) TCGA-L5-A4OI-01 6 116818039 116818039 T A TRAPPC3L 3'UTR 0.33 TCGA-L5-A4OI-01 6 116836792 116836792 G A FAM26E Silent p.A190A 0.27 TCGA-L5-A4OI-01 6 117113925 117113925 G T GPRC6A Missense_Mutation p.L721I 0.31 tolerated(0.17) benign(0.012) TCGA-L5-A4OI-01 6 118596719 118596719 C T SLC35F1 Silent p.S245S 0.26 TCGA-L5-A4OI-01 6 119338013 119338013 C T FAM184A Missense_Mutation p.E477K 0.40 tolerated(0.17) benign(0.047) TCGA-L5-A4OI-01 6 121412157 121412157 A - TBC1D32 Frame_Shift_Del p.W1166Gfs*4 0.25 TCGA-L5-A4OI-01 6 12296776 12296776 A - EDN1 3'UTR 0.58 TCGA-L5-A4OI-01 6 126250395 126250395 T A NCOA7 3'UTR 0.34 TCGA-L5-A4OI-01 6 131895190 131895190 C T ARG1 Intron 0.45 TCGA-L5-A4OI-01 6 131919846 131919846 T - MED23 Frame_Shift_Del p.N759Mfs*12 0.42 TCGA-L5-A4OI-01 6 132043497 132043497 T C ENPP3 Silent p.N566N 0.09 TCGA-L5-A4OI-01 6 132722421 132722421 C T MOXD1 Missense_Mutation p.A49T 0.58 tolerated(0.67) benign(0.036) TCGA-L5-A4OI-01 6 136972139 136972139 C T MAP3K5 Missense_Mutation p.V591M 0.40 deleterious(0.02) probably_damaging(0.991) TCGA-L5-A4OI-01 6 137019800 137019800 G T MAP3K5 Silent p.T211T 0.36 TCGA-L5-A4OI-01 6 137113057 137113057 C T MAP3K5 Missense_Mutation p.R80Q 0.43 tolerated(0.3) benign(0.105) TCGA-L5-A4OI-01 6 138202351 138202351 C - TNFAIP3 Frame_Shift_Del p.K759Sfs*57 0.35 TCGA-L5-A4OI-01 6 138655275 138655275 G A KIAA1244 Missense_Mutation p.M1764I 0.35 tolerated(0.47) benign(0.2) TCGA-L5-A4OI-01 6 139165650 139165650 C T ECT2L Nonsense_Mutation p.R233* 0.09 TCGA-L5-A4OI-01 6 144263029 144263029 G A PLAGL1 Silent p.T308T 0.44 TCGA-L5-A4OI-01 6 146351349 146351349 G A GRM1 Silent p.T232T 0.65 TCGA-L5-A4OI-01 6 146756235 146756235 A G GRM1 3'UTR 0.46 TCGA-L5-A4OI-01 6 146756758 146756758 A - GRM1 3'UTR 0.42 TCGA-L5-A4OI-01 6 149833366 149833366 T - PPIL4 Frame_Shift_Del p.K384Nfs*112 0.25 TCGA-L5-A4OI-01 6 149983001 149983001 T A LATS1 Missense_Mutation p.D1086V 0.34 deleterious(0.02) probably_damaging(0.976) TCGA-L5-A4OI-01 6 150570075 150570075 T C PPP1R14C 3'UTR 0.36 TCGA-L5-A4OI-01 6 151331085 151331085 C T MTHFD1L Silent p.G752G 0.60 TCGA-L5-A4OI-01 6 153311100 153311100 T C MTRF1L Missense_Mutation p.E358G 0.32 deleterious(0) benign(0.005) TCGA-L5-A4OI-01 6 15520515 15520515 T - JARID2 3'UTR 0.45 TCGA-L5-A4OI-01 6 15523213 15523213 T C DTNBP1 Missense_Mutation p.D350G 0.29 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-L5-A4OI-01 6 157963736 157963736 G A ZDHHC14 Missense_Mutation p.R122Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 6 159653240 159653241 CT - FNDC1 Frame_Shift_Del p.L566Efs*5 0.32 TCGA-L5-A4OI-01 6 160169471 160169471 G A WTAP Intron 0.09 TCGA-L5-A4OI-01 6 160169553 160169553 G T WTAP Intron 0.15 TCGA-L5-A4OI-01 6 160496984 160496984 T C IGF2R Missense_Mutation p.Y1758H 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OI-01 6 161538022 161538022 C G MAP3K4 3'UTR 0.35 TCGA-L5-A4OI-01 6 163987695 163987695 T - QKI Intron 0.47 TCGA-L5-A4OI-01 6 167794617 167794617 G A TCP10 Missense_Mutation p.H91Y 0.30 deleterious(0.02) possibly_damaging(0.791) TCGA-L5-A4OI-01 6 170104005 170104006 - A PHF10 3'UTR 0.40 TCGA-L5-A4OI-01 6 170592659 170592659 G A DLL1 Missense_Mutation p.R570W 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A4OI-01 6 170881319 170881319 A G TBP Missense_Mutation p.Y329C 0.35 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A4OI-01 6 20152936 20152936 C T MBOAT1 Missense_Mutation p.R55H 0.37 tolerated(1) benign(0.001) TCGA-L5-A4OI-01 6 21598293 21598293 T - SOX4 3'UTR 0.28 TCGA-L5-A4OI-01 6 22569749 22569749 C T HDGFL1 5'Flank 0.26 TCGA-L5-A4OI-01 6 25916975 25916975 T C SLC17A2 Missense_Mutation p.T290A 0.35 tolerated(0.37) benign(0.108) TCGA-L5-A4OI-01 6 26093113 26093113 C - HFE Frame_Shift_Del p.P274Lfs*22 0.45 TCGA-L5-A4OI-01 6 26199227 26199228 - G HIST1H2AD Frame_Shift_Ins p.R82Pfs*19 0.49 TCGA-L5-A4OI-01 6 26856819 26856819 G A GUSBP2 RNA 0.38 TCGA-L5-A4OI-01 6 27806814 27806814 C A HIST1H2BN Silent p.S125S 0.06 TCGA-L5-A4OI-01 6 28889703 28889703 C T TRIM27 Missense_Mutation p.R161Q 0.78 tolerated(0.29) benign(0.001) TCGA-L5-A4OI-01 6 29976018 29976018 C T ZNRD1-AS1 Intron 0.36 TCGA-L5-A4OI-01 6 30638221 30638221 C T DHX16 Missense_Mutation p.R211H 0.43 deleterious(0) unknown(0) TCGA-L5-A4OI-01 6 30697904 30697904 G A FLOT1 Silent p.S383S 0.43 TCGA-L5-A4OI-01 6 30955979 30955979 C T MUC21 3'UTR 0.78 TCGA-L5-A4OI-01 6 31107581 31107581 C T PSORS1C1 Missense_Mutation p.L111F 0.40 deleterious_low_confidence(0) possibly_damaging(0.765) TCGA-L5-A4OI-01 6 31680129 31680129 G T LY6G6E Missense_Mutation p.L123I 0.14 tolerated_low_confidence(0.13) possibly_damaging(0.807) TCGA-L5-A4OI-01 6 31838592 31838592 C A SLC44A4 Missense_Mutation p.A312S 0.80 deleterious(0) benign(0.134) TCGA-L5-A4OI-01 6 31926206 31926206 G - NELFE Frame_Shift_Del p.G7Dfs*2 0.37 TCGA-L5-A4OI-01 6 32148246 32148246 G - RNF5 3'UTR 0.38 TCGA-L5-A4OI-01 6 32164716 32164716 G A NOTCH4 Missense_Mutation p.A1729V 0.38 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 6 32181998 32181998 G T NOTCH4 Missense_Mutation p.P686T 0.60 tolerated(0.63) benign(0.357) TCGA-L5-A4OI-01 6 32818895 32818895 C T TAP1 Silent p.T352T 0.90 TCGA-L5-A4OI-01 6 32827216 32827216 C T PSMB9 Silent p.S189S 0.77 TCGA-L5-A4OI-01 6 32906673 32906673 T C HLA-DMB Missense_Mutation p.Y42C 0.72 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OI-01 6 33283669 33283669 C - ZBTB22 Frame_Shift_Del p.G342Vfs*17 0.21 TCGA-L5-A4OI-01 6 33668253 33668253 G A UQCC2 Missense_Mutation p.S84L 0.38 deleterious(0) benign(0.231) TCGA-L5-A4OI-01 6 34003759 34003759 G A GRM4 Nonsense_Mutation p.Q710* 0.43 TCGA-L5-A4OI-01 6 34211248 34211250 ACC - HMGA1 In_Frame_Del p.T78del 0.51 TCGA-L5-A4OI-01 6 34213986 34213987 - A HMGA1 3'UTR 0.41 TCGA-L5-A4OI-01 6 34558018 34558018 T - C6orf106 3'UTR 0.37 TCGA-L5-A4OI-01 6 35051266 35051266 G A ANKS1A Missense_Mutation p.D994N 0.52 tolerated(0.13) probably_damaging(0.981) TCGA-L5-A4OI-01 6 35425714 35425715 - C FANCE Frame_Shift_Ins p.V311Sfs*2 0.33 TCGA-L5-A4OI-01 6 35438036 35438036 G A RPL10A Missense_Mutation p.A131T 0.25 deleterious(0.02) possibly_damaging(0.846) TCGA-L5-A4OI-01 6 35802051 35802051 G A SRPK1 3'UTR 0.60 TCGA-L5-A4OI-01 6 36807165 36807165 C - CPNE5 5'UTR 0.35 TCGA-L5-A4OI-01 6 39513391 39513391 G A KIF6 Missense_Mutation p.R419C 0.43 deleterious(0) probably_damaging(0.959) TCGA-L5-A4OI-01 6 39580993 39580993 A - KIF6 Frame_Shift_Del p.L204* 0.32 TCGA-L5-A4OI-01 6 39869234 39869234 C T DAAM2 Missense_Mutation p.R990C 0.31 deleterious(0) probably_damaging(0.984) TCGA-L5-A4OI-01 6 42237239 42237239 G A TRERF1 Silent p.S30S 0.34 TCGA-L5-A4OI-01 6 43147035 43147035 G A SRF 3'UTR 0.48 TCGA-L5-A4OI-01 6 43147074 43147074 A G SRF 3'UTR 0.16 TCGA-L5-A4OI-01 6 43488038 43488038 C - POLR1C Frame_Shift_Del p.L178Wfs*76 0.26 TCGA-L5-A4OI-01 6 44145101 44145101 C T CAPN11 Missense_Mutation p.R454W 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OI-01 6 44195073 44195073 A G SLC29A1 Missense_Mutation p.Q8R 0.33 tolerated(0.49) benign(0.003) TCGA-L5-A4OI-01 6 45882249 45882249 C T CLIC5 Intron 0.41 TCGA-L5-A4OI-01 6 46851912 46851912 C T GPR116 Missense_Mutation p.R142H 0.30 tolerated(0.57) benign(0) TCGA-L5-A4OI-01 6 47200300 47200300 A - TNFRSF21 3'UTR 0.45 TCGA-L5-A4OI-01 6 47678531 47678531 T C GPR115 Missense_Mutation p.F70S 0.32 tolerated(0.1) possibly_damaging(0.891) TCGA-L5-A4OI-01 6 47678561 47678561 A - GPR115 Frame_Shift_Del p.K82Sfs*29 0.34 TCGA-L5-A4OI-01 6 49518517 49518517 T C C6orf141 Silent p.P4P 0.37 TCGA-L5-A4OI-01 6 49754577 49754577 A G PGK2 Silent p.C108C 0.33 TCGA-L5-A4OI-01 6 4996642 4996642 G A RPP40 Missense_Mutation p.S191L 0.28 tolerated(0.09) benign(0.016) TCGA-L5-A4OI-01 6 50712911 50712911 T C TFAP2D Silent p.H325H 0.38 TCGA-L5-A4OI-01 6 54002313 54002313 G T MLIP Intron 0.32 TCGA-L5-A4OI-01 6 55039341 55039341 G A HCRTR2 5'UTR 0.39 TCGA-L5-A4OI-01 6 56035809 56035809 T - COL21A1 Frame_Shift_Del p.K253Rfs*2 0.29 TCGA-L5-A4OI-01 6 56473882 56473882 C T DST Intron 0.45 TCGA-L5-A4OI-01 6 56819248 56819248 C - BEND6 5'Flank 0.30 TCGA-L5-A4OI-01 6 64415953 64415953 A - PHF3 Frame_Shift_Del p.V1137* 0.33 TCGA-L5-A4OI-01 6 70991130 70991130 G A COL9A1 Missense_Mutation p.P280L 0.26 unknown(0) TCGA-L5-A4OI-01 6 71570938 71570938 T C SMAP1 3'UTR 0.64 TCGA-L5-A4OI-01 6 71666061 71666061 G A B3GAT2 Silent p.D24D 0.40 TCGA-L5-A4OI-01 6 74351590 74351590 A - SLC17A5 Frame_Shift_Del p.Y117Mfs*17 0.17 TCGA-L5-A4OI-01 6 75844499 75844499 C T COL12A1 Missense_Mutation p.V1823I 0.40 probably_damaging(0.997) TCGA-L5-A4OI-01 6 76591494 76591494 G A MYO6 Missense_Mutation p.R792H 0.46 deleterious(0.03) unknown(0) TCGA-L5-A4OI-01 6 76782291 76782291 A T IMPG1 5'UTR 0.27 TCGA-L5-A4OI-01 6 7881754 7881754 A - TXNDC5 3'UTR 0.79 TCGA-L5-A4OI-01 6 80721484 80721484 G A TTK Missense_Mutation p.R256Q 0.31 tolerated(0.31) benign(0.009) TCGA-L5-A4OI-01 6 88120371 88120371 G A C6ORF165 Silent p.V59V 0.35 TCGA-L5-A4OI-01 6 90077509 90077509 T - RRAGD 3'UTR 0.33 TCGA-L5-A4OI-01 6 90458950 90458950 C T MDN1 Missense_Mutation p.D1252N 0.30 benign(0.02) TCGA-L5-A4OI-01 6 90641112 90641112 G A BACH2 3'UTR 0.28 TCGA-L5-A4OI-01 6 91246115 91246115 C T MAP3K7 Missense_Mutation p.G433R 0.57 tolerated(0.11) benign(0.001) TCGA-L5-A4OI-01 6 96654643 96654644 - T FUT9 3'UTR 0.33 TCGA-L5-A4OI-01 6 96662714 96662714 A G FUT9 3'UTR 0.53 TCGA-L5-A4OI-01 6 99858807 99858807 G - PNISR Frame_Shift_Del p.P104Lfs*58 0.29 TCGA-L5-A4OI-01 6 99860163 99860163 A T PNISR Intron 0.38 TCGA-L5-A4OI-01 6 99881180 99881180 A G USP45 3'UTR 0.30 TCGA-L5-A4OI-01 7 100350086 100350086 A C ZAN Missense_Mutation p.K786N 0.45 unknown(0) TCGA-L5-A4OI-01 7 100685146 100685146 T G MUC17 Silent p.V3483V 0.45 TCGA-L5-A4OI-01 7 101259565 101259565 C A MYL10 Missense_Mutation p.E156D 0.37 deleterious(0.02) probably_damaging(0.971) TCGA-L5-A4OI-01 7 103113235 103113235 A - RELN 3'UTR 0.29 TCGA-L5-A4OI-01 7 104767492 104767492 C A SRPK2 Silent p.T590T 0.38 TCGA-L5-A4OI-01 7 105664829 105664829 C T CDHR3 Silent p.P693P 0.26 TCGA-L5-A4OI-01 7 105909653 105909653 C A NAMPT Missense_Mutation p.G185C 0.20 deleterious(0) benign(0.392) TCGA-L5-A4OI-01 7 107221266 107221266 G T BCAP29 Nonsense_Mutation p.G17* 0.42 TCGA-L5-A4OI-01 7 107703340 107703340 G A LAMB4 Missense_Mutation p.P1054L 0.31 deleterious(0.03) benign(0.284) TCGA-L5-A4OI-01 7 107790216 107790216 G A NRCAM 3'UTR 0.43 TCGA-L5-A4OI-01 7 11676257 11676257 A G THSD7A Silent p.C174C 0.45 TCGA-L5-A4OI-01 7 120388254 120388254 A - KCND2 3'UTR 0.41 TCGA-L5-A4OI-01 7 120704315 120704315 G A CPED1 Silent p.Q188Q 0.37 TCGA-L5-A4OI-01 7 120969811 120969811 G A WNT16 Missense_Mutation p.A96T 0.35 tolerated(0.55) benign(0.003) TCGA-L5-A4OI-01 7 123332485 123332485 T - WASL Frame_Shift_Del p.V422Wfs*17 0.26 TCGA-L5-A4OI-01 7 123509154 123509154 G A HYAL4 Missense_Mutation p.R276H 0.28 tolerated(0.46) benign(0.003) TCGA-L5-A4OI-01 7 12396935 12396935 G A VWDE Missense_Mutation p.R1161C 0.32 tolerated(0.16) possibly_damaging(0.54) TCGA-L5-A4OI-01 7 124387326 124387326 G A GPR37 Silent p.N365N 0.33 TCGA-L5-A4OI-01 7 124493078 124493078 G A POT1 Missense_Mutation p.R273W 0.36 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 7 12668733 12668733 G A SCIN Missense_Mutation p.R402H 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 7 127714589 127714589 C T SND1 Silent p.G605G 0.50 TCGA-L5-A4OI-01 7 128142022 128142022 T C METTL2B 3'UTR 0.42 TCGA-L5-A4OI-01 7 128411334 128411334 T - CALU 3'UTR 0.48 TCGA-L5-A4OI-01 7 128432166 128432166 C T CCDC136 5'UTR 0.52 TCGA-L5-A4OI-01 7 128455793 128455794 GT - CCDC136 Frame_Shift_Del p.C1058Wfs*3 0.36 TCGA-L5-A4OI-01 7 128505663 128505663 C T ATP6V1F 3'UTR 0.29 TCGA-L5-A4OI-01 7 129067708 129067708 G T AHCYL2 3'UTR 0.47 TCGA-L5-A4OI-01 7 129688937 129688937 G A ZC3HC1 Missense_Mutation p.A65V 0.37 tolerated(0.2) benign(0.002) TCGA-L5-A4OI-01 7 133059721 133059721 G T EXOC4 Missense_Mutation p.A383S 0.30 tolerated(0.4) benign(0.07) TCGA-L5-A4OI-01 7 134261164 134261165 - A AKR1B15 Frame_Shift_Ins p.T272Nfs*29 0.47 TCGA-L5-A4OI-01 7 134653474 134653475 - T CALD1 3'UTR 0.33 TCGA-L5-A4OI-01 7 136920962 136920962 C T PTN Intron 0.20 TCGA-L5-A4OI-01 7 138333812 138333812 C T SVOPL Missense_Mutation p.R202H 0.06 deleterious(0) probably_damaging(0.98) TCGA-L5-A4OI-01 7 138413561 138413561 G T ATP6V0A4 Missense_Mutation p.P652Q 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 7 138603524 138603524 A - KIAA1549 Frame_Shift_Del p.L283* 0.26 TCGA-L5-A4OI-01 7 138764917 138764917 C T ZC3HAV1 Missense_Mutation p.S257N 0.47 tolerated(0.1) possibly_damaging(0.827) TCGA-L5-A4OI-01 7 138774372 138774372 C T ZC3HAV1 Missense_Mutation p.E148K 0.45 deleterious(0) possibly_damaging(0.905) TCGA-L5-A4OI-01 7 139056191 139056191 G A C7orf55-LUC7L2 Intron 0.42 TCGA-L5-A4OI-01 7 142326807 142326807 A G TRBV19 Silent p.G35G 0.40 TCGA-L5-A4OI-01 7 143956190 143956190 A - OR2A7 Frame_Shift_Del p.C178Vfs*37 0.14 TCGA-L5-A4OI-01 7 144077329 144077330 - G ARHGEF5 3'UTR 0.62 TCGA-L5-A4OI-01 7 144101720 144101720 C T NOBOX Missense_Mutation p.G47R 0.42 deleterious_low_confidence(0) possibly_damaging(0.71) TCGA-L5-A4OI-01 7 1484824 1484824 C T MICALL2 Silent p.S294S 0.38 TCGA-L5-A4OI-01 7 148802071 148802071 C T ZNF425 Missense_Mutation p.G298R 0.50 tolerated(0.15) possibly_damaging(0.665) TCGA-L5-A4OI-01 7 149171408 149171408 C T ZNF746 3'UTR 0.30 TCGA-L5-A4OI-01 7 149498873 149498873 C T SSPO RNA 0.33 TCGA-L5-A4OI-01 7 149516520 149516520 C - SSPO RNA 0.28 TCGA-L5-A4OI-01 7 150647021 150647021 C T KCNH2 Intron 0.14 TCGA-L5-A4OI-01 7 150932435 150932435 G C CHPF2 Missense_Mutation p.A189P 0.44 tolerated(0.08) benign(0.117) TCGA-L5-A4OI-01 7 150935672 150935672 T C CHPF2 Missense_Mutation p.Y742H 0.34 deleterious(0) possibly_damaging(0.665) TCGA-L5-A4OI-01 7 151046320 151046320 A - NUB1 Frame_Shift_Del p.D120Ifs*17 0.27 TCGA-L5-A4OI-01 7 151253457 151253457 A T PRKAG2 3'UTR 0.37 TCGA-L5-A4OI-01 7 153584641 153584641 T - DPP6 5'UTR 0.35 TCGA-L5-A4OI-01 7 154862575 154862575 C A HTR5A 5'UTR 0.42 TCGA-L5-A4OI-01 7 155100578 155100579 GT - INSIG1 3'UTR 0.30 TCGA-L5-A4OI-01 7 1579726 1579726 C T MAFK Silent p.R62R 0.25 TCGA-L5-A4OI-01 7 1582092 1582092 G A MAFK 3'UTR 0.27 TCGA-L5-A4OI-01 7 158483385 158483385 G A NCAPG2 Nonsense_Mutation p.R138* 0.33 TCGA-L5-A4OI-01 7 1885537 1885537 C A AC110781.3 Intron 0.42 TCGA-L5-A4OI-01 7 19739713 19739713 C - TWISTNB Frame_Shift_Del p.G196Efs*3 0.34 TCGA-L5-A4OI-01 7 20199466 20199466 T - MACC1 Frame_Shift_Del p.N173Mfs*11 0.36 TCGA-L5-A4OI-01 7 20453075 20453075 G A ITGB8 3'UTR 0.35 TCGA-L5-A4OI-01 7 22158432 22158432 A T RAPGEF5 3'UTR 0.46 TCGA-L5-A4OI-01 7 2275111 2275111 G A FTSJ2 Silent p.D129D 0.34 TCGA-L5-A4OI-01 7 24324976 24324976 C T NPY Silent p.D39D 0.49 TCGA-L5-A4OI-01 7 2473033 2473033 C T CHST12 Silent p.S253S 0.49 TCGA-L5-A4OI-01 7 26231741 26231741 T - HNRNPA2B1 3'UTR 0.24 TCGA-L5-A4OI-01 7 2704157 2704157 C A TTYH3 3'UTR 0.38 TCGA-L5-A4OI-01 7 27193435 27193435 A G HOXA7 3'UTR 0.45 TCGA-L5-A4OI-01 7 27194267 27194267 G - HOXA7 3'UTR 0.23 TCGA-L5-A4OI-01 7 2768249 2768249 C A GNA12 3'UTR 0.48 TCGA-L5-A4OI-01 7 29606191 29606191 C T PRR15 Silent p.S82S 0.37 TCGA-L5-A4OI-01 7 35672518 35672518 G A HERPUD2 3'UTR 0.35 TCGA-L5-A4OI-01 7 35675005 35675005 C T HERPUD2 Silent p.Q227Q 0.48 TCGA-L5-A4OI-01 7 38468851 38468851 C T AMPH Intron 0.44 TCGA-L5-A4OI-01 7 38725751 38725751 G A FAM183B 5'UTR 0.33 TCGA-L5-A4OI-01 7 39745766 39745766 A G RALA Silent p.E181E 0.35 TCGA-L5-A4OI-01 7 42977165 42977165 C T MRPL32 Missense_Mutation p.T186I 0.37 tolerated(0.05) benign(0.103) TCGA-L5-A4OI-01 7 44921238 44921238 T - PURB 3'UTR 0.27 TCGA-L5-A4OI-01 7 45144171 45144171 C T TBRG4 Silent p.T291T 0.36 TCGA-L5-A4OI-01 7 47842891 47842891 C T PKD1L1 Missense_Mutation p.V2627I 0.46 tolerated(1) benign(0.007) TCGA-L5-A4OI-01 7 47849110 47849110 G A PKD1L1 Silent p.G2549G 0.45 TCGA-L5-A4OI-01 7 47852865 47852865 G A PKD1L1 Silent p.I2400I 0.53 TCGA-L5-A4OI-01 7 48312959 48312959 G A ABCA13 Silent p.R1232R 0.45 TCGA-L5-A4OI-01 7 50660479 50660479 G A GRB10 3'UTR 0.65 TCGA-L5-A4OI-01 7 54621750 54621750 C T VSTM2A Intron 0.42 TCGA-L5-A4OI-01 7 5567138 5567138 A - ACTB 3'UTR 0.36 TCGA-L5-A4OI-01 7 57200022 57200022 T - ZNF479 Frame_Shift_Del p.R4Dfs*13 0.75 TCGA-L5-A4OI-01 7 5965347 5965347 A - RSPH10B 3'Flank 0.35 TCGA-L5-A4OI-01 7 6204148 6204148 C T CYTH3 3'UTR 0.55 TCGA-L5-A4OI-01 7 63981718 63981719 - A ZNF680 Frame_Shift_Ins p.N472* 0.22 TCGA-L5-A4OI-01 7 6442356 6442357 - C RAC1 3'Flank 0.36 TCGA-L5-A4OI-01 7 72413250 72413250 C T POM121 Silent p.A641A 0.21 TCGA-L5-A4OI-01 7 72470041 72470042 CT - STAG3L3 RNA 0.21 TCGA-L5-A4OI-01 7 73150579 73150580 - T ABHD11 3'UTR 0.36 TCGA-L5-A4OI-01 7 73790972 73790972 G T CLIP2 Missense_Mutation p.Q747H 0.42 deleterious(0) benign(0.372) TCGA-L5-A4OI-01 7 73961439 73961439 C A GTF2IRD1 Missense_Mutation p.A612D 0.35 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 7 74005272 74005272 G A GTF2IRD1 Silent p.T871T 0.47 TCGA-L5-A4OI-01 7 7612169 7612169 T C MIOS Silent p.C21C 0.37 TCGA-L5-A4OI-01 7 77539699 77539699 T C PHTF2 Missense_Mutation p.L216P 0.36 tolerated(0.07) possibly_damaging(0.809) TCGA-L5-A4OI-01 7 77569581 77569581 T - PHTF2 Frame_Shift_Del p.L536Cfs*4 0.30 TCGA-L5-A4OI-01 7 77646723 77646724 - T MAGI2 3'UTR 0.27 TCGA-L5-A4OI-01 7 77797325 77797325 C T MAGI2 Missense_Mutation p.G835D 0.06 deleterious(0) probably_damaging(0.965) TCGA-L5-A4OI-01 7 80286011 80286011 G A CD36 Silent p.T92T 0.50 TCGA-L5-A4OI-01 7 82791762 82791762 G A PCLO Silent p.S49S 0.38 TCGA-L5-A4OI-01 7 83587991 83587991 T - SEMA3A 3'UTR 0.31 TCGA-L5-A4OI-01 7 84628713 84628713 T - SEMA3D 3'UTR 0.36 TCGA-L5-A4OI-01 7 86273830 86273830 C T GRM3 5'UTR 0.60 TCGA-L5-A4OI-01 7 86825191 86825191 T C DMTF1 3'UTR 0.41 TCGA-L5-A4OI-01 7 87762205 87762205 G A ADAM22 Missense_Mutation p.R339Q 0.37 deleterious(0.05) probably_damaging(0.916) TCGA-L5-A4OI-01 7 90896644 90896644 C T FZD1 3'UTR 0.43 TCGA-L5-A4OI-01 7 91625184 91625184 T - AKAP9 Intron 0.50 TCGA-L5-A4OI-01 7 92132381 92132381 C T PEX1 Missense_Mutation p.V734I 0.31 tolerated(0.38) benign(0.001) TCGA-L5-A4OI-01 7 92731997 92731997 G A SAMD9 Silent p.N1138N 0.36 TCGA-L5-A4OI-01 7 92734717 92734717 T C SAMD9 Missense_Mutation p.N232D 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 7 95045559 95045560 - A PON2 Frame_Shift_Ins p.S66* 0.40 TCGA-L5-A4OI-01 7 97841874 97841874 C A BHLHA15 Silent p.R85R 0.46 TCGA-L5-A4OI-01 7 99055926 99055926 G - ATP5J2 3'UTR 0.36 TCGA-L5-A4OI-01 7 99084704 99084705 - A ZNF789 Frame_Shift_Ins p.T293Nfs*3 0.28 TCGA-L5-A4OI-01 7 99700562 99700562 C T AP4M1 Silent p.Y110Y 0.37 TCGA-L5-A4OI-01 7 99709401 99709401 G A TAF6 Missense_Mutation p.R321C 0.28 deleterious(0) possibly_damaging(0.745) TCGA-L5-A4OI-01 7 99950305 99950305 C - PILRB Intron 0.08 TCGA-L5-A4OI-01 8 101153207 101153207 A G FBXO43 Silent p.D425D 0.35 TCGA-L5-A4OI-01 8 101596401 101596401 T C SNX31 Missense_Mutation p.S370G 0.21 deleterious(0.04) possibly_damaging(0.81) TCGA-L5-A4OI-01 8 101715375 101715376 - T PABPC1 3'UTR 0.23 TCGA-L5-A4OI-01 8 102211071 102211071 A G ZNF706 3'Flank 0.29 TCGA-L5-A4OI-01 8 103265894 103265894 A - UBR5 3'UTR 0.27 TCGA-L5-A4OI-01 8 10468813 10468813 C - RP1L1 Frame_Shift_Del p.G932Efs*40 0.22 TCGA-L5-A4OI-01 8 105367351 105367351 A - DCSTAMP Frame_Shift_Del p.R428Dfs*13 0.27 TCGA-L5-A4OI-01 8 105501486 105501487 - A LRP12 3'UTR 0.20 TCGA-L5-A4OI-01 8 105509429 105509429 A - LRP12 Frame_Shift_Del p.C451Afs*37 0.40 TCGA-L5-A4OI-01 8 110476889 110476889 G A PKHD1L1 Missense_Mutation p.E2610K 0.19 deleterious(0.04) possibly_damaging(0.576) TCGA-L5-A4OI-01 8 110587964 110587964 A G SYBU Missense_Mutation p.L388P 0.29 tolerated(0.34) benign(0.029) TCGA-L5-A4OI-01 8 110980379 110980379 G A KCNV1 Nonsense_Mutation p.R481* 0.30 TCGA-L5-A4OI-01 8 11172559 11172560 AG - MTMR9 Frame_Shift_Del p.E368Vfs*19 0.24 TCGA-L5-A4OI-01 8 113349856 113349856 C A CSMD3 Nonsense_Mutation p.G2253* 0.25 TCGA-L5-A4OI-01 8 11412845 11412845 G - BLK Frame_Shift_Del p.D210Mfs*7 0.29 TCGA-L5-A4OI-01 8 116426160 116426160 T - TRPS1 3'UTR 0.23 TCGA-L5-A4OI-01 8 116599766 116599766 A G TRPS1 Missense_Mutation p.L721P 0.27 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-L5-A4OI-01 8 116680911 116680911 C - TRPS1 5'UTR 0.50 TCGA-L5-A4OI-01 8 117858533 117858533 T - RAD21 3'UTR 0.48 TCGA-L5-A4OI-01 8 120101974 120101974 A G COLEC10 Silent p.G68G 0.24 TCGA-L5-A4OI-01 8 120577131 120577131 G A ENPP2 Silent p.N784N 0.25 TCGA-L5-A4OI-01 8 121292216 121292216 C T COL14A1 Missense_Mutation p.S1175L 0.31 tolerated(0.19) benign(0.407) TCGA-L5-A4OI-01 8 123793943 123793943 T - ZHX2 5'UTR 0.27 TCGA-L5-A4OI-01 8 123793953 123793953 C T ZHX2 5'UTR 0.35 TCGA-L5-A4OI-01 8 124162324 124162324 C G TBC1D31 Missense_Mutation p.T1008S 0.07 tolerated_low_confidence(0.49) benign(0.007) TCGA-L5-A4OI-01 8 124384893 124384893 T - ATAD2 Frame_Shift_Del p.E119Kfs*8 0.37 TCGA-L5-A4OI-01 8 124827002 124827002 C T FAM91A1 3'UTR 0.32 TCGA-L5-A4OI-01 8 125026586 125026587 - C FER1L6 Intron 0.23 TCGA-L5-A4OI-01 8 125131921 125131921 A - FER1L6 Frame_Shift_Del p.K1823Sfs*48 0.24 TCGA-L5-A4OI-01 8 125564841 125564841 A - MTSS1 3'UTR 0.38 TCGA-L5-A4OI-01 8 125597329 125597329 T - MTSS1 Frame_Shift_Del p.R155Efs*34 0.21 TCGA-L5-A4OI-01 8 12579725 12579725 T - LONRF1 3'UTR 0.31 TCGA-L5-A4OI-01 8 125987893 125987893 A - ZNF572 Frame_Shift_Del p.K6Nfs*16 0.26 TCGA-L5-A4OI-01 8 127568850 127568850 C T FAM84B Missense_Mutation p.R262H 0.21 deleterious(0) possibly_damaging(0.67) TCGA-L5-A4OI-01 8 128753394 128753394 T - MYC 3'UTR 0.36 TCGA-L5-A4OI-01 8 128753578 128753578 T - MYC 3'UTR 0.31 TCGA-L5-A4OI-01 8 12878882 12878882 G A KIAA1456 Missense_Mutation p.E232K 0.22 tolerated(0.34) benign(0.283) TCGA-L5-A4OI-01 8 12973135 12973135 T C DLC1 Silent p.L460L 0.25 TCGA-L5-A4OI-01 8 133637520 133637520 T A LRRC6 Missense_Mutation p.L278F 0.31 tolerated(0.05) benign(0.009) TCGA-L5-A4OI-01 8 133637521 133637521 A G LRRC6 Missense_Mutation p.L278S 0.31 tolerated(0.74) benign(0.004) TCGA-L5-A4OI-01 8 133905965 133905965 G A TG Missense_Mutation p.R931H 0.32 deleterious(0.04) benign(0.004) TCGA-L5-A4OI-01 8 133906103 133906103 C T TG Missense_Mutation p.P977L 0.33 tolerated(0.06) benign(0.005) TCGA-L5-A4OI-01 8 135614876 135614878 CTT - ZFAT In_Frame_Del p.K362del 0.36 TCGA-L5-A4OI-01 8 139144926 139144926 C G FAM135B Silent p.L1377L 0.40 TCGA-L5-A4OI-01 8 139151309 139151309 G T FAM135B Missense_Mutation p.S1274Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OI-01 8 141231604 141231604 A G TRAPPC9 Missense_Mutation p.V935A 0.30 tolerated(0.74) benign(0.001) TCGA-L5-A4OI-01 8 141468445 141468445 G T TRAPPC9 Silent p.S73S 0.23 TCGA-L5-A4OI-01 8 141745480 141745480 G A PTK2 Nonsense_Mutation p.R634* 0.27 TCGA-L5-A4OI-01 8 142221559 142221559 G C SLC45A4 Silent p.G793G 0.26 TCGA-L5-A4OI-01 8 142222358 142222358 G A SLC45A4 Missense_Mutation p.P696S 0.25 deleterious_low_confidence(0.01) benign(0.086) TCGA-L5-A4OI-01 8 142367058 142367058 G A GPR20 Silent p.S322S 0.26 TCGA-L5-A4OI-01 8 142367352 142367352 C T GPR20 Silent p.S224S 0.33 TCGA-L5-A4OI-01 8 142367375 142367375 C T GPR20 Missense_Mutation p.G217S 0.31 tolerated(0.35) possibly_damaging(0.657) TCGA-L5-A4OI-01 8 143603442 143603442 C T BAI1 Silent p.R1047R 0.28 TCGA-L5-A4OI-01 8 143994741 143994741 C T CYP11B2 Missense_Mutation p.E361K 0.30 tolerated(0.17) possibly_damaging(0.907) TCGA-L5-A4OI-01 8 144126186 144126186 C T C8orf31 Missense_Mutation p.R103C 0.37 tolerated_low_confidence(0.16) possibly_damaging(0.835) TCGA-L5-A4OI-01 8 144297286 144297286 A G GPIHBP1 Missense_Mutation p.T150A 0.40 tolerated(0.81) benign(0.002) TCGA-L5-A4OI-01 8 144358905 144358905 C T GLI4 Silent p.G354G 0.37 TCGA-L5-A4OI-01 8 144904656 144904656 C A PUF60 Intron 0.32 TCGA-L5-A4OI-01 8 144921730 144921730 G A NRBP2 Intron 0.28 TCGA-L5-A4OI-01 8 145109541 145109542 - G OPLAH Frame_Shift_Ins p.H870Pfs*92 0.14 TCGA-L5-A4OI-01 8 145166383 145166383 G A KIAA1875 Silent p.P827P 0.30 TCGA-L5-A4OI-01 8 145169722 145169722 A G KIAA1875 Missense_Mutation p.M1329V 0.36 tolerated(0.21) benign(0.021) TCGA-L5-A4OI-01 8 145621896 145621898 CTT - CPSF1 In_Frame_Del p.E914del 0.41 TCGA-L5-A4OI-01 8 145639157 145639157 G - SLC39A4 Frame_Shift_Del p.H466Tfs*17 0.48 TCGA-L5-A4OI-01 8 145665265 145665265 C T TONSL Intron 0.31 TCGA-L5-A4OI-01 8 145748682 145748682 G - LRRC24 Frame_Shift_Del p.P240Rfs*52 0.21 TCGA-L5-A4OI-01 8 146033029 146033029 G A ZNF517 Missense_Mutation p.R243Q 0.32 tolerated(0.2) possibly_damaging(0.553) TCGA-L5-A4OI-01 8 16012654 16012654 C A MSR1 Splice_Site p.X273_splice 0.31 TCGA-L5-A4OI-01 8 17188772 17188772 C T MTMR7 Missense_Mutation p.R251H 0.29 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 8 1719218 1719218 A T CLN8 5'UTR 0.28 TCGA-L5-A4OI-01 8 1728667 1728667 C T CLN8 Silent p.F265F 0.28 TCGA-L5-A4OI-01 8 18388206 18388206 T C PSD3 3'UTR 0.24 TCGA-L5-A4OI-01 8 18392589 18392589 A C PSD3 3'UTR 0.37 TCGA-L5-A4OI-01 8 1951635 1951635 G - KBTBD11 3'UTR 0.13 TCGA-L5-A4OI-01 8 19684060 19684060 A - INTS10 Frame_Shift_Del p.T379Pfs*2 0.18 TCGA-L5-A4OI-01 8 19709225 19709225 G A INTS10 Missense_Mutation p.R681H 0.24 deleterious(0) possibly_damaging(0.64) TCGA-L5-A4OI-01 8 20110344 20110344 G A LZTS1 Silent p.Y366Y 0.23 TCGA-L5-A4OI-01 8 2044147 2044147 T C MYOM2 Missense_Mutation p.L729P 0.37 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 8 21549740 21549740 A - GFRA2 3'UTR 0.28 TCGA-L5-A4OI-01 8 21939823 21939823 C - DMTN 3'UTR 0.38 TCGA-L5-A4OI-01 8 22084495 22084495 A G PHYHIP Missense_Mutation p.M70T 0.24 deleterious(0) probably_damaging(0.974) TCGA-L5-A4OI-01 8 22447194 22447195 - C PDLIM2 Frame_Shift_Ins p.R487Pfs*16 0.30 TCGA-L5-A4OI-01 8 22458526 22458526 G T C8orf58 Nonsense_Mutation p.E58* 0.25 TCGA-L5-A4OI-01 8 23054712 23054712 C T TNFRSF10A Silent p.P340P 0.19 TCGA-L5-A4OI-01 8 23225572 23225572 C T LOXL2 Missense_Mutation p.R98Q 0.30 deleterious(0.01) probably_damaging(0.972) TCGA-L5-A4OI-01 8 23712168 23712168 T - STC1 5'UTR 0.46 TCGA-L5-A4OI-01 8 24342860 24342860 A T ADAM7 Missense_Mutation p.T316S 0.28 tolerated(0.69) benign(0.001) TCGA-L5-A4OI-01 8 24813280 24813280 G T CTD-2168K21.2 5'Flank 0.28 TCGA-L5-A4OI-01 8 25240190 25240190 A - DOCK5 Frame_Shift_Del p.R1345Gfs*12 0.30 TCGA-L5-A4OI-01 8 26269154 26269154 A G BNIP3L 3'UTR 0.30 TCGA-L5-A4OI-01 8 27294938 27294938 G A PTK2B Silent p.P484P 0.35 TCGA-L5-A4OI-01 8 27516366 27516366 G A SCARA3 Missense_Mutation p.V227M 0.20 tolerated(0.1) benign(0.047) TCGA-L5-A4OI-01 8 27987107 27987107 T C ELP3 Silent p.L236L 0.22 TCGA-L5-A4OI-01 8 28360352 28360352 G A FZD3 5'UTR 0.38 TCGA-L5-A4OI-01 8 29961841 29961841 T - LEPROTL1 Frame_Shift_Del p.Y42Tfs*10 0.25 TCGA-L5-A4OI-01 8 30036928 30036928 C A DCTN6 Silent p.S96S 0.22 TCGA-L5-A4OI-01 8 327602 327602 C T FAM87A RNA 0.33 TCGA-L5-A4OI-01 8 33358086 33358086 G A MAK16 3'UTR 0.26 TCGA-L5-A4OI-01 8 36793351 36793351 T G KCNU1 Silent p.P1121P 0.34 TCGA-L5-A4OI-01 8 37633479 37633479 T C PROSC Missense_Mutation p.I214T 0.06 deleterious(0) benign(0.04) TCGA-L5-A4OI-01 8 37692814 37692814 C T GPR124 Silent p.G577G 0.33 TCGA-L5-A4OI-01 8 37696506 37696506 C T GPR124 Silent p.G764G 0.25 TCGA-L5-A4OI-01 8 37729770 37729770 G A RAB11FIP1 Silent p.D850D 0.23 TCGA-L5-A4OI-01 8 37985908 37985908 A G ASH2L Missense_Mutation p.Y422C 0.30 deleterious(0) probably_damaging(0.937) TCGA-L5-A4OI-01 8 38174997 38174997 C T WHSC1L1 Intron 0.27 TCGA-L5-A4OI-01 8 38251766 38251766 T - LETM2 Intron 0.20 TCGA-L5-A4OI-01 8 382898 382898 A - FBXO25 Frame_Shift_Del p.K85Nfs*26 0.19 TCGA-L5-A4OI-01 8 38707301 38707301 A T TACC1 3'UTR 0.56 TCGA-L5-A4OI-01 8 39068767 39068767 A - ADAM32 Frame_Shift_Del p.K388Nfs*39 0.31 TCGA-L5-A4OI-01 8 39114763 39114763 T A ADAM32 Missense_Mutation p.L688H 0.31 deleterious(0.05) benign(0.082) TCGA-L5-A4OI-01 8 39785442 39785442 G A IDO1 Missense_Mutation p.R317H 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 8 39871110 39871110 C T IDO2 Missense_Mutation p.A262V 0.35 tolerated(0.35) benign(0.005) TCGA-L5-A4OI-01 8 39871188 39871188 A G IDO2 Missense_Mutation p.H288R 0.14 deleterious(0.01) possibly_damaging(0.897) TCGA-L5-A4OI-01 8 40554909 40554909 G A ZMAT4 Silent p.A68A 0.27 TCGA-L5-A4OI-01 8 42188501 42188501 G - IKBKB 3'UTR 0.26 TCGA-L5-A4OI-01 8 42302215 42302215 C T SLC20A2 Missense_Mutation p.A227T 0.24 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OI-01 8 42814435 42814435 G A HOOK3 Missense_Mutation p.R198K 0.21 deleterious(0.01) benign(0.339) TCGA-L5-A4OI-01 8 48691161 48691161 G A PRKDC Silent p.F3903F 0.14 TCGA-L5-A4OI-01 8 48734354 48734354 C A PRKDC Splice_Site p.X2974_splice 0.26 TCGA-L5-A4OI-01 8 51465618 51465618 C T SNTG1 Missense_Mutation p.A230V 0.37 deleterious(0) probably_damaging(0.937) TCGA-L5-A4OI-01 8 52321321 52321321 G T PXDNL Missense_Mutation p.L955M 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OI-01 8 52321614 52321614 G A PXDNL Missense_Mutation p.A857V 0.21 tolerated(0.25) benign(0.26) TCGA-L5-A4OI-01 8 53852639 53852639 G A NPBWR1 Missense_Mutation p.V58M 0.33 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OI-01 8 54147421 54147421 G A OPRK1 Missense_Mutation p.R170C 0.31 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 8 54900772 54900772 C T TCEA1 Missense_Mutation p.R123Q 0.25 tolerated(0.56) benign(0) TCGA-L5-A4OI-01 8 55533894 55533894 G A RP1 Missense_Mutation p.R123H 0.20 deleterious(0.01) probably_damaging(0.915) TCGA-L5-A4OI-01 8 56438238 56438238 T - XKR4 3'UTR 0.17 TCGA-L5-A4OI-01 8 56864612 56864612 G A LYN Missense_Mutation p.G192D 0.20 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OI-01 8 57026410 57026410 C T MOS Silent p.P44P 0.19 TCGA-L5-A4OI-01 8 57075769 57075769 C T PLAG1 3'UTR 0.24 TCGA-L5-A4OI-01 8 57076234 57076234 A G PLAG1 3'UTR 0.35 TCGA-L5-A4OI-01 8 57077122 57077122 T - PLAG1 3'UTR 0.20 TCGA-L5-A4OI-01 8 57358249 57358249 G A PENK Intron 0.29 TCGA-L5-A4OI-01 8 58192100 58192100 G T LINC00588 5'Flank 0.27 TCGA-L5-A4OI-01 8 59494526 59494526 A G SDCBP 3'UTR 0.26 TCGA-L5-A4OI-01 8 62212594 62212594 C T CLVS1 Missense_Mutation p.R70C 0.24 tolerated(0.11) benign(0.43) TCGA-L5-A4OI-01 8 6479132 6479132 G A MCPH1 Missense_Mutation p.R791H 0.28 tolerated(0.13) benign(0) TCGA-L5-A4OI-01 8 65492885 65492885 G A BHLHE22 5'UTR 0.22 TCGA-L5-A4OI-01 8 65495174 65495174 A - BHLHE22 3'UTR 0.22 TCGA-L5-A4OI-01 8 68113742 68113742 G A ARFGEF1 Missense_Mutation p.R1743C 0.28 deleterious(0) probably_damaging(0.915) TCGA-L5-A4OI-01 8 68956723 68956723 C T PREX2 Missense_Mutation p.R281W 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-L5-A4OI-01 8 70617403 70617403 T - SLCO5A1 Frame_Shift_Del p.K495Nfs*2 0.20 TCGA-L5-A4OI-01 8 72966004 72966004 C T TRPA1 Missense_Mutation p.R543H 0.38 tolerated(0.08) benign(0.004) TCGA-L5-A4OI-01 8 73480397 73480397 A - KCNB2 Frame_Shift_Del p.E146Nfs*3 0.33 TCGA-L5-A4OI-01 8 73849363 73849363 C T KCNB2 Silent p.T591T 0.23 TCGA-L5-A4OI-01 8 74891018 74891018 C T TMEM70 Nonsense_Mutation p.R80* 0.29 TCGA-L5-A4OI-01 8 77616580 77616580 C T ZFHX4 Missense_Mutation p.A86V 0.30 possibly_damaging(0.682) TCGA-L5-A4OI-01 8 77778910 77778910 C T ZFHX4 3'UTR 0.24 TCGA-L5-A4OI-01 8 79514420 79514420 G A PKIA 3'UTR 0.22 TCGA-L5-A4OI-01 8 80963777 80963777 T - TPD52 Frame_Shift_Del p.K164Sfs*5 0.17 TCGA-L5-A4OI-01 8 81399929 81399929 T G ZBTB10 Missense_Mutation p.L295R 0.51 deleterious_low_confidence(0) benign(0.149) TCGA-L5-A4OI-01 8 82196888 82196888 T - FABP5 3'UTR 0.57 TCGA-L5-A4OI-01 8 82713506 82713506 T - SNX16 3'UTR 0.20 TCGA-L5-A4OI-01 8 85096025 85096025 C T RALYL 5'Flank 0.25 TCGA-L5-A4OI-01 8 88884172 88884173 - T DCAF4L2 3'UTR 0.67 TCGA-L5-A4OI-01 8 91636817 91636817 A G TMEM64 3'UTR 0.24 TCGA-L5-A4OI-01 8 92008950 92008950 G A TMEM55A Missense_Mutation p.P188S 0.26 tolerated(0.07) probably_damaging(0.995) TCGA-L5-A4OI-01 8 95500723 95500723 A - KIAA1429 3'UTR 0.12 TCGA-L5-A4OI-01 8 95686611 95686611 A - ESRP1 Frame_Shift_Del p.N512Tfs*2 0.22 TCGA-L5-A4OI-01 8 95792607 95792607 C T DPY19L4 Silent p.A532A 0.21 TCGA-L5-A4OI-01 8 95942503 95942503 A - TP53INP1 3'UTR 0.29 TCGA-L5-A4OI-01 8 9636187 9636187 T - TNKS 3'UTR 0.24 TCGA-L5-A4OI-01 8 98289596 98289596 C - TSPYL5 Frame_Shift_Del p.P160Lfs*4 0.27 TCGA-L5-A4OI-01 8 99102178 99102178 A G C8orf47 Silent p.P311P 0.26 TCGA-L5-A4OI-01 8 99441993 99441993 G A KCNS2 3'UTR 0.30 TCGA-L5-A4OI-01 8 99467408 99467409 - A STK3 3'UTR 0.31 TCGA-L5-A4OI-01 9 100407480 100407480 G A NCBP1 Missense_Mutation p.V155I 0.34 tolerated(0.15) possibly_damaging(0.49) TCGA-L5-A4OI-01 9 102628843 102628843 T - NR4A3 3'UTR 0.26 TCGA-L5-A4OI-01 9 104239241 104239241 C T TMEM246 Missense_Mutation p.R45Q 0.47 tolerated(0.14) benign(0.014) TCGA-L5-A4OI-01 9 112932512 112932512 T - PALM2-AKAP2 3'UTR 0.34 TCGA-L5-A4OI-01 9 113173449 113173449 T C SVEP1 Missense_Mutation p.E2181G 0.29 probably_damaging(1) TCGA-L5-A4OI-01 9 113704388 113704388 G T LPAR1 Silent p.R36R 0.41 TCGA-L5-A4OI-01 9 114416305 114416305 A - DNAJC25 3'UTR 0.60 TCGA-L5-A4OI-01 9 114860860 114860860 G T SUSD1 Missense_Mutation p.P455H 0.39 deleterious(0) possibly_damaging(0.789) TCGA-L5-A4OI-01 9 115652623 115652623 C T SLC46A2 Silent p.L113L 0.23 TCGA-L5-A4OI-01 9 116276828 116276828 G A RGS3 Missense_Mutation p.G523E 0.48 deleterious(0) possibly_damaging(0.535) TCGA-L5-A4OI-01 9 116931665 116931665 G A COL27A1 Silent p.S610S 0.44 TCGA-L5-A4OI-01 9 117129899 117129899 C T AKNA Missense_Mutation p.R551Q 0.41 tolerated(1) benign(0.002) TCGA-L5-A4OI-01 9 119164245 119164246 - T PAPPA 3'UTR 0.29 TCGA-L5-A4OI-01 9 119461051 119461051 C T TRIM32 Missense_Mutation p.R344W 0.47 deleterious(0.02) possibly_damaging(0.849) TCGA-L5-A4OI-01 9 120476462 120476462 G T TLR4 Missense_Mutation p.D686Y 0.35 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OI-01 9 123935992 123935992 C T CNTRL Missense_Mutation p.R2242C 0.24 probably_damaging(0.985) TCGA-L5-A4OI-01 9 123943436 123943436 A - RAB14 3'UTR 0.30 TCGA-L5-A4OI-01 9 123943561 123943561 T - RAB14 3'UTR 0.37 TCGA-L5-A4OI-01 9 124989768 124989768 G - LHX6 Intron 0.45 TCGA-L5-A4OI-01 9 125582521 125582521 C T PDCL Missense_Mutation p.R250H 0.36 tolerated(0.13) probably_damaging(0.999) TCGA-L5-A4OI-01 9 125865461 125865461 C T RABGAP1 Missense_Mutation p.A1060V 0.30 tolerated(0.61) benign(0) TCGA-L5-A4OI-01 9 125887398 125887399 - A STRBP 3'UTR 0.29 TCGA-L5-A4OI-01 9 127214852 127214852 G A GPR144 Missense_Mutation p.R63Q 0.28 tolerated(0.53) benign(0.008) TCGA-L5-A4OI-01 9 127220451 127220451 C A GPR144 Missense_Mutation p.L541I 0.45 tolerated(0.1) benign(0.043) TCGA-L5-A4OI-01 9 128347905 128347905 G A MAPKAP1 Silent p.S200S 0.43 TCGA-L5-A4OI-01 9 129645503 129645503 T A ZBTB34 3'UTR 0.45 TCGA-L5-A4OI-01 9 129646764 129646764 T - ZBTB34 3'UTR 0.59 TCGA-L5-A4OI-01 9 129849690 129849690 A - ANGPTL2 3'UTR 0.20 TCGA-L5-A4OI-01 9 130444703 130444703 G A STXBP1 Nonsense_Mutation p.W522* 0.45 TCGA-L5-A4OI-01 9 130653132 130653132 C T ST6GALNAC6 Missense_Mutation p.R163H 0.42 benign(0.114) TCGA-L5-A4OI-01 9 130914272 130914272 A - LCN2 Frame_Shift_Del p.N149Tfs*16 0.29 TCGA-L5-A4OI-01 9 130925726 130925726 C T C9orf16 Silent p.Y28Y 0.41 TCGA-L5-A4OI-01 9 131016963 131016963 T C DNM1 Silent p.P855P 0.35 TCGA-L5-A4OI-01 9 131122868 131122868 G T SLC27A4 3'UTR 0.50 TCGA-L5-A4OI-01 9 131851327 131851327 C T DOLPP1 3'UTR 0.45 TCGA-L5-A4OI-01 9 133936593 133936594 - C LAMC3 Frame_Shift_Ins p.Q781Pfs*7 0.28 TCGA-L5-A4OI-01 9 133946903 133946903 G T LAMC3 Silent p.T1034T 0.34 TCGA-L5-A4OI-01 9 134379578 134379578 C T POMT1 Intron 0.50 TCGA-L5-A4OI-01 9 134464198 134464198 C - RAPGEF1 Frame_Shift_Del p.V847* 0.38 TCGA-L5-A4OI-01 9 134504583 134504583 T C RAPGEF1 Missense_Mutation p.M268V 0.28 tolerated(0.53) benign(0.001) TCGA-L5-A4OI-01 9 135766991 135766991 A - TSC1 3'UTR 0.31 TCGA-L5-A4OI-01 9 135779102 135779102 C T TSC1 Missense_Mutation p.R715Q 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 9 136198675 136198675 C T SURF6 3'UTR 0.26 TCGA-L5-A4OI-01 9 136507451 136507451 C T DBH Silent p.P203P 0.44 TCGA-L5-A4OI-01 9 136568260 136568260 C T SARDH Intron 0.32 TCGA-L5-A4OI-01 9 136915646 136915646 G - BRD3 Frame_Shift_Del p.T189Pfs*54 0.26 TCGA-L5-A4OI-01 9 138379511 138379511 G - PPP1R26 Frame_Shift_Del p.G1054Afs*100 0.33 TCGA-L5-A4OI-01 9 138594199 138594199 G A KCNT1 Missense_Mutation p.G32D 0.64 deleterious_low_confidence(0) benign(0.001) TCGA-L5-A4OI-01 9 139264771 139264771 C T CARD9 Missense_Mutation p.R309H 0.45 tolerated(0.16) benign(0.081) TCGA-L5-A4OI-01 9 139278451 139278452 - G SNAPC4 Frame_Shift_Ins p.H485Pfs*72 0.27 TCGA-L5-A4OI-01 9 139753253 139753253 C A MAMDC4 Silent p.T968T 0.50 TCGA-L5-A4OI-01 9 139820270 139820270 G A TRAF2 Missense_Mutation p.V475I 0.29 tolerated(0.06) benign(0.07) TCGA-L5-A4OI-01 9 139836708 139836708 C T FBXW5 Missense_Mutation p.A296T 0.45 tolerated(0.54) benign(0.001) TCGA-L5-A4OI-01 9 139902219 139902219 G A ABCA2 3'UTR 0.35 TCGA-L5-A4OI-01 9 139908434 139908434 C T ABCA2 Missense_Mutation p.G1433R 0.75 tolerated(0.1) benign(0.254) TCGA-L5-A4OI-01 9 139909958 139909958 C T ABCA2 Missense_Mutation p.C1202Y 0.40 deleterious(0) probably_damaging(0.987) TCGA-L5-A4OI-01 9 139926112 139926112 G T FUT7 Missense_Mutation p.L27I 0.42 tolerated(0.14) benign(0.001) TCGA-L5-A4OI-01 9 140006327 140006327 C - DPP7 Frame_Shift_Del p.G402Vfs*28 0.51 TCGA-L5-A4OI-01 9 140140255 140140255 C T FAM166A Missense_Mutation p.G36E 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 9 140356679 140356679 G - PNPLA7 Frame_Shift_Del p.I1200Sfs*148 0.21 TCGA-L5-A4OI-01 9 140730423 140730423 T - EHMT1 3'UTR 0.38 TCGA-L5-A4OI-01 9 14082736 14082736 C A NFIB 3'Flank 0.57 TCGA-L5-A4OI-01 9 14084517 14084517 T - NFIB 3'Flank 0.29 TCGA-L5-A4OI-01 9 14088141 14088141 T - NFIB 3'UTR 0.50 TCGA-L5-A4OI-01 9 17135271 17135271 G - CNTLN Frame_Shift_Del p.A72Qfs*18 0.32 TCGA-L5-A4OI-01 9 18680349 18680350 - G ADAMTSL1 Frame_Shift_Ins p.I396Hfs*30 0.36 TCGA-L5-A4OI-01 9 18776908 18776908 C T ADAMTSL1 Missense_Mutation p.A894V 0.45 deleterious(0) benign(0.005) TCGA-L5-A4OI-01 9 19058188 19058188 G A HAUS6 Silent p.P859P 0.32 TCGA-L5-A4OI-01 9 20414370 20414370 G A MLLT3 Silent p.S158S 0.19 TCGA-L5-A4OI-01 9 20988415 20988415 C T FOCAD Missense_Mutation p.T1664M 0.38 tolerated(0.12) benign(0.004) TCGA-L5-A4OI-01 9 21007039 21007039 C T PTPLAD2 Missense_Mutation p.M232I 0.38 tolerated_low_confidence(0.27) benign(0) TCGA-L5-A4OI-01 9 21077745 21077745 G T IFNB1 Missense_Mutation p.L42M 0.44 deleterious(0.02) probably_damaging(0.994) TCGA-L5-A4OI-01 9 23690729 23690729 G T ELAVL2 3'UTR 0.32 TCGA-L5-A4OI-01 9 23691514 23691514 T - ELAVL2 3'UTR 0.33 TCGA-L5-A4OI-01 9 23692567 23692567 C T ELAVL2 Silent p.T356T 0.33 TCGA-L5-A4OI-01 9 25678405 25678405 C T TUSC1 5'UTR 0.39 TCGA-L5-A4OI-01 9 26841688 26841688 C T CAAP1 3'UTR 0.30 TCGA-L5-A4OI-01 9 26842136 26842136 A - CAAP1 3'UTR 0.22 TCGA-L5-A4OI-01 9 27158026 27158026 A - TEK Frame_Shift_Del p.V86Lfs*31 0.34 TCGA-L5-A4OI-01 9 27180305 27180305 T A TEK Nonsense_Mutation p.C323* 0.49 TCGA-L5-A4OI-01 9 27212888 27212888 A - TEK Frame_Shift_Del p.K958Nfs*14 0.30 TCGA-L5-A4OI-01 9 32630106 32630106 G A TAF1L Silent p.H1824H 0.42 TCGA-L5-A4OI-01 9 33030485 33030485 G T DNAJA1 Missense_Mutation p.G155C 0.36 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OI-01 9 33037063 33037063 C T DNAJA1 Missense_Mutation p.P309S 0.08 deleterious(0.02) benign(0.364) TCGA-L5-A4OI-01 9 33047213 33047213 A C SMU1 3'UTR 0.29 TCGA-L5-A4OI-01 9 33675365 33675365 A - PTENP1 RNA 0.46 TCGA-L5-A4OI-01 9 34370034 34370034 G A KIAA1161 3'UTR 0.31 TCGA-L5-A4OI-01 9 34371719 34371719 C T KIAA1161 Missense_Mutation p.R374H 0.38 tolerated(0.08) possibly_damaging(0.654) TCGA-L5-A4OI-01 9 35106613 35106613 C T FAM214B Silent p.G327G 0.40 TCGA-L5-A4OI-01 9 35396556 35396556 C T UNC13B Missense_Mutation p.R1049W 0.39 deleterious(0.01) benign(0.339) TCGA-L5-A4OI-01 9 35446471 35446471 G A ATP8B5P RNA 0.43 TCGA-L5-A4OI-01 9 35555543 35555543 A C RUSC2 Missense_Mutation p.Q834P 0.36 tolerated(0.11) benign(0.002) TCGA-L5-A4OI-01 9 35610103 35610103 C T CD72 3'UTR 0.51 TCGA-L5-A4OI-01 9 35792472 35792472 C T NPR2 Missense_Mutation p.R23W 0.38 deleterious(0.02) possibly_damaging(0.757) TCGA-L5-A4OI-01 9 36112461 36112461 A - RECK Frame_Shift_Del p.N685Tfs*12 0.41 TCGA-L5-A4OI-01 9 36249366 36249366 C T GNE Missense_Mutation p.R27Q 0.25 tolerated_low_confidence(0.21) benign(0) TCGA-L5-A4OI-01 9 36339212 36339212 A T RNF38 3'UTR 0.40 TCGA-L5-A4OI-01 9 37080331 37080331 C A RP11-220I1.1 RNA 0.30 TCGA-L5-A4OI-01 9 39102541 39102541 G - CNTNAP3 Frame_Shift_Del p.P903Lfs*27 0.16 TCGA-L5-A4OI-01 9 43685103 43685103 G A CNTNAP3B 5'UTR 0.41 TCGA-L5-A4OI-01 9 4711447 4711448 - A AK3 3'UTR 0.27 TCGA-L5-A4OI-01 9 5557753 5557756 GTAA - PDCD1LG2 Splice_Site p.X256_splice 0.40 TCGA-L5-A4OI-01 9 5920370 5920370 T - KIAA2026 Frame_Shift_Del p.I1876* 0.39 TCGA-L5-A4OI-01 9 69421905 69421905 A - ANKRD20A4 Frame_Shift_Del p.N459Ifs*5 0.15 TCGA-L5-A4OI-01 9 70177789 70177789 G A FOXD4L5 Silent p.G65G 0.13 TCGA-L5-A4OI-01 9 71623513 71623513 A G PIP5K1B 3'UTR 0.27 TCGA-L5-A4OI-01 9 72967275 72967275 T - SMC5 3'UTR 0.41 TCGA-L5-A4OI-01 9 73028896 73028896 G A KLF9 5'UTR 0.33 TCGA-L5-A4OI-01 9 742405 742405 C T KANK1 Silent p.N1299N 0.38 TCGA-L5-A4OI-01 9 75773269 75773269 A - ANXA1 5'UTR 0.29 TCGA-L5-A4OI-01 9 77353400 77353400 A G TRPM6 Missense_Mutation p.L1900P 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 9 79119713 79119713 C - GCNT1 3'UTR 0.26 TCGA-L5-A4OI-01 9 82333750 82333750 A G TLE4 Missense_Mutation p.N485S 0.38 tolerated(0.94) benign(0.003) TCGA-L5-A4OI-01 9 8449822 8449822 G A PTPRD Silent p.S1297S 0.44 TCGA-L5-A4OI-01 9 90321801 90321802 - G DAPK1 Frame_Shift_Ins p.Y1275Vfs*64 0.35 TCGA-L5-A4OI-01 9 91262294 91262294 C T RP13-60M5.2 RNA 0.48 TCGA-L5-A4OI-01 9 91618256 91618256 C - S1PR3 3'UTR 0.14 TCGA-L5-A4OI-01 9 95022503 95022503 T - IARS Frame_Shift_Del p.M601* 0.28 TCGA-L5-A4OI-01 9 95072527 95072527 G A NOL8 Missense_Mutation p.S871L 0.32 tolerated(0.1) benign(0.05) TCGA-L5-A4OI-01 9 95155368 95155368 G A OGN Missense_Mutation p.P143S 0.35 tolerated(0.66) possibly_damaging(0.657) TCGA-L5-A4OI-01 9 95481635 95481635 C A BICD2 Missense_Mutation p.G431V 0.48 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OI-01 9 96422621 96422621 A G PHF2 Missense_Mutation p.T493A 0.18 tolerated(0.64) unknown(0) TCGA-L5-A4OI-01 9 96422679 96422679 C A PHF2 Missense_Mutation p.P512H 0.56 deleterious(0.01) unknown(0) TCGA-L5-A4OI-01 9 96441680 96441681 TC - PHF2 3'UTR 0.42 TCGA-L5-A4OI-01 9 96441691 96441691 C T PHF2 3'UTR 0.31 TCGA-L5-A4OI-01 9 968371 968371 T C DMRT1 3'UTR 0.06 TCGA-L5-A4OI-01 9 98206306 98206306 T - PTCH1 3'UTR 0.36 TCGA-L5-A4OI-01 9 98208061 98208061 C T PTCH1 3'UTR 0.38 TCGA-L5-A4OI-01 9 98209585 98209585 G A PTCH1 Missense_Mutation p.P1318L 0.43 deleterious_low_confidence(0.04) probably_damaging(0.92) TCGA-L5-A4OI-01 9 991709 991709 A - DMRT3 3'UTR 0.29 TCGA-L5-A4OI-01 X 100809325 100809325 T C ARMCX1 3'UTR 0.91 TCGA-L5-A4OI-01 X 101396161 101396161 C T TCEAL6 Missense_Mutation p.R48Q 0.81 tolerated(0.25) benign(0.32) TCGA-L5-A4OI-01 X 102529123 102529123 C - TCEAL5 Frame_Shift_Del p.T124Rfs*17 0.51 TCGA-L5-A4OI-01 X 102587009 102587009 T - TCEAL7 3'UTR 0.64 TCGA-L5-A4OI-01 X 103220212 103220212 T - TMSB15B 3'UTR 0.54 TCGA-L5-A4OI-01 X 105201278 105201278 T A NRK 3'UTR 0.72 TCGA-L5-A4OI-01 X 106957132 106957132 T C TSC22D3 3'UTR 0.64 TCGA-L5-A4OI-01 X 109441522 109441522 A - AMMECR1 3'UTR 0.60 TCGA-L5-A4OI-01 X 110495579 110495579 A G CAPN6 Missense_Mutation p.Y219H 0.76 tolerated(0.07) benign(0.068) TCGA-L5-A4OI-01 X 11318840 11318840 A - AMELX 3'UTR 0.71 TCGA-L5-A4OI-01 X 114143061 114143061 A - HTR2C 3'UTR 0.56 TCGA-L5-A4OI-01 X 115590159 115590159 T - SLC6A14 3'UTR 0.78 TCGA-L5-A4OI-01 X 11683128 11683128 C T ARHGAP6 5'UTR 0.82 TCGA-L5-A4OI-01 X 119572090 119572090 G AA LAMP2 Intron 0.09 TCGA-L5-A4OI-01 X 125686220 125686220 G A DCAF12L1 Silent p.D124D 0.79 TCGA-L5-A4OI-01 X 129149744 129149744 C - BCORL1 Frame_Shift_Del p.Q1001Rfs*49 0.48 TCGA-L5-A4OI-01 X 136113358 136113358 G A GPR101 Missense_Mutation p.A159V 0.80 deleterious(0.01) probably_damaging(0.989) TCGA-L5-A4OI-01 X 136652816 136652816 T - ZIC3 3'UTR 0.57 TCGA-L5-A4OI-01 X 138809833 138809833 C A ATP11C 3'UTR 0.82 TCGA-L5-A4OI-01 X 138809834 138809834 A C ATP11C 3'UTR 0.82 TCGA-L5-A4OI-01 X 140994824 140994824 C A MAGEC1 Missense_Mutation p.P545H 0.73 tolerated_low_confidence(0.12) possibly_damaging(0.893) TCGA-L5-A4OI-01 X 1428554 1428554 C T CSF2RA 3'UTR 0.56 TCGA-L5-A4OI-01 X 148073067 148073067 T - AFF2 3'UTR 0.74 TCGA-L5-A4OI-01 X 152105006 152105006 A G ZNF185 Missense_Mutation p.D388G 0.86 tolerated(0.14) benign(0.009) TCGA-L5-A4OI-01 X 152846547 152846547 T G ATP2B3 3'UTR 0.54 TCGA-L5-A4OI-01 X 153035373 153035373 C - PLXNB3 Frame_Shift_Del p.R561Afs*67 0.51 TCGA-L5-A4OI-01 X 153209096 153209096 C T RENBP Missense_Mutation p.G122S 0.82 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 X 153222829 153222829 G A HCFC1 Silent p.P763P 0.89 TCGA-L5-A4OI-01 X 153760190 153760190 G - G6PD 3'UTR 0.87 TCGA-L5-A4OI-01 X 154194908 154194908 C T F8 Missense_Mutation p.R355Q 0.78 tolerated(0.34) benign(0.01) TCGA-L5-A4OI-01 X 155255058 155255058 C - WASH6P RNA 0.11 TCGA-L5-A4OI-01 X 15721077 15721077 G A CA5BP1 RNA 0.93 TCGA-L5-A4OI-01 X 18959676 18959676 T C PHKA2 Missense_Mutation p.T279A 0.71 deleterious(0) probably_damaging(0.98) TCGA-L5-A4OI-01 X 21627459 21627459 C T CNKSR2 Missense_Mutation p.R806W 0.76 deleterious(0) probably_damaging(0.976) TCGA-L5-A4OI-01 X 40510961 40510961 A - MED14 3'UTR 0.79 TCGA-L5-A4OI-01 X 40944995 40944995 T C USP9X 5'UTR 0.77 TCGA-L5-A4OI-01 X 41029818 41029818 T C USP9X Silent p.G991G 0.82 TCGA-L5-A4OI-01 X 41201775 41201775 C T DDX3X Silent p.Y104Y 0.74 TCGA-L5-A4OI-01 X 46457487 46457487 G A CHST7 3'UTR 0.75 TCGA-L5-A4OI-01 X 48564745 48564745 C T SUV39H1 Silent p.D306D 0.78 TCGA-L5-A4OI-01 X 48814242 48814242 C T OTUD5 Silent p.E197E 0.65 TCGA-L5-A4OI-01 X 49087004 49087004 G A CACNA1F Missense_Mutation p.P197S 0.93 tolerated(0.3) possibly_damaging(0.613) TCGA-L5-A4OI-01 X 53285056 53285056 C G IQSEC2 Missense_Mutation p.E309Q 0.82 deleterious(0.03) possibly_damaging(0.877) TCGA-L5-A4OI-01 X 53577971 53577971 C A HUWE1 Missense_Mutation p.E3092D 0.67 benign(0.217) TCGA-L5-A4OI-01 X 53587251 53587251 C T HUWE1 Missense_Mutation p.R2545H 0.85 possibly_damaging(0.522) TCGA-L5-A4OI-01 X 57621237 57621237 T - ZXDB 3'UTR 0.78 TCGA-L5-A4OI-01 X 64955272 64955272 G T MSN Missense_Mutation p.K313N 0.72 deleterious(0) probably_damaging(0.929) TCGA-L5-A4OI-01 X 65244881 65244881 T C VSIG4 Missense_Mutation p.K309R 0.76 tolerated(0.65) benign(0.08) TCGA-L5-A4OI-01 X 65393488 65393489 - G HEPH Frame_Shift_Ins p.S214Qfs*18 0.35 TCGA-L5-A4OI-01 X 68725612 68725613 - C FAM155B Frame_Shift_Ins p.L166Sfs*5 0.71 TCGA-L5-A4OI-01 X 68725688 68725688 A G FAM155B Missense_Mutation p.K188R 0.92 tolerated(0.37) probably_damaging(0.953) TCGA-L5-A4OI-01 X 69261645 69261645 C T AWAT2 3'UTR 0.74 TCGA-L5-A4OI-01 X 70510542 70510544 CAT - NONO In_Frame_Del p.H20del 0.86 TCGA-L5-A4OI-01 X 71354500 71354500 C T NHSL2 Missense_Mutation p.R236W 0.78 deleterious(0.03) benign(0.023) TCGA-L5-A4OI-01 X 73071132 73071132 C T XIST RNA 0.83 TCGA-L5-A4OI-01 X 73957636 73957636 T - KIAA2022 3'UTR 0.46 TCGA-L5-A4OI-01 X 74636973 74636973 G T ZDHHC15 Missense_Mutation p.P306T 0.82 tolerated(0.47) benign(0.016) TCGA-L5-A4OI-01 X 78427238 78427238 C T GPR174 Missense_Mutation p.P245L 0.87 deleterious(0) probably_damaging(1) TCGA-L5-A4OI-01 X 79699759 79699759 T - FAM46D 3'UTR 0.64 TCGA-L5-A4OI-01 X 84520244 84520246 AAG - ZNF711 In_Frame_Del p.E302del 0.75 TCGA-L5-A4OI-01 X 84532966 84532966 A - POF1B 3'UTR 0.44 TCGA-L5-A4OI-01 X 91133118 91133118 C T PCDH11X Missense_Mutation p.P627S 0.92 tolerated(1) possibly_damaging(0.669) TCGA-L5-A4OI-01 X 92966183 92966184 - T FAM133A 3'UTR 0.72 TCGA-L5-A4OI-01 X 9863381 9863381 G A SHROOM2 Missense_Mutation p.R478Q 0.79 tolerated(0.21) benign(0.009) TCGA-L5-A4OI-01 X 99550894 99550895 TT - PCDH19 3'UTR 0.68 TCGA-L5-A4OI-01 Y 16952604 16952604 G A NLGN4Y Missense_Mutation p.R638H 0.10 tolerated(0.15) probably_damaging(0.984) TCGA-L5-A4OI-01 Y 16953112 16953113 - C NLGN4Y Frame_Shift_Ins p.H809Pfs*7 0.47 TCGA-L5-A4OI-01 Y 4924864 4924864 C G PCDH11Y 5'UTR 0.78 TCGA-L5-A4OJ-01 10 102988555 102988555 G A LBX1 Silent p.D6D 0.46 TCGA-L5-A4OJ-01 10 105362805 105362805 A G SH3PXD2A Missense_Mutation p.S696P 0.31 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A4OJ-01 10 118893720 118893720 C T VAX1 Silent p.A268A 0.46 TCGA-L5-A4OJ-01 10 22690117 22690118 - A SPAG6 Frame_Shift_Ins p.C411Mfs*8 0.33 TCGA-L5-A4OJ-01 10 24874962 24874962 C T ARHGAP21 Missense_Mutation p.R1419H 0.35 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OJ-01 10 27294379 27294379 T G ANKRD26 3'UTR 0.75 TCGA-L5-A4OJ-01 10 30657516 30657516 T G AL161651.1 5'Flank 0.35 TCGA-L5-A4OJ-01 10 31137949 31137949 C T ZNF438 Missense_Mutation p.G462E 0.49 tolerated(0.29) benign(0.036) TCGA-L5-A4OJ-01 10 37414925 37414925 C T ANKRD30A Silent p.D14D 0.47 TCGA-L5-A4OJ-01 11 100061924 100061924 C T CNTN5 Silent p.Y549Y 0.55 TCGA-L5-A4OJ-01 11 105923578 105923578 C G KBTBD3 Nonstop_Mutation p.*613Sext*3 0.40 TCGA-L5-A4OJ-01 11 107300162 107300162 G A CWF19L2 Nonsense_Mutation p.Q266* 0.48 TCGA-L5-A4OJ-01 11 120328447 120328447 C T ARHGEF12 Missense_Mutation p.T736I 0.11 deleterious(0) probably_damaging(0.973) TCGA-L5-A4OJ-01 11 132306622 132306622 T G OPCML Missense_Mutation p.K239T 0.25 tolerated(0.47) benign(0.1) TCGA-L5-A4OJ-01 11 132813007 132813007 C G OPCML 5'UTR 0.40 TCGA-L5-A4OJ-01 11 14287100 14287100 C T RP11-21L19.1 Intron 0.40 TCGA-L5-A4OJ-01 11 1464733 1464733 C T BRSK2 Silent p.F262F 0.32 TCGA-L5-A4OJ-01 11 3844965 3844965 G T PGAP2 Intron 0.46 TCGA-L5-A4OJ-01 11 43772501 43772501 A G HSD17B12 Silent p.A67A 0.24 TCGA-L5-A4OJ-01 11 48510431 48510431 C A OR4A47 Missense_Mutation p.F29L 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.476) TCGA-L5-A4OJ-01 11 55038578 55038578 A - TRIM48 3'UTR 0.31 TCGA-L5-A4OJ-01 11 5565870 5565870 A G OR52H1 Missense_Mutation p.L295P 0.24 deleterious(0) probably_damaging(0.945) TCGA-L5-A4OJ-01 11 57003456 57003456 C A APLNR Missense_Mutation p.E341D 0.28 tolerated(0.46) benign(0) TCGA-L5-A4OJ-01 11 58711067 58711067 C T GLYATL1 Nonsense_Mutation p.R26* 0.55 TCGA-L5-A4OJ-01 11 62850901 62850901 G A SLC22A24 Silent p.L367L 0.33 TCGA-L5-A4OJ-01 11 640565 640565 C T DRD4 Missense_Mutation p.R408C 0.33 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OJ-01 11 65633568 65633568 C T MUS81 3'UTR 0.42 TCGA-L5-A4OJ-01 11 6736736 6736736 G A GVINP1 RNA 0.31 TCGA-L5-A4OJ-01 11 792616 792616 C T SLC25A22 Missense_Mutation p.R175H 0.29 tolerated(0.54) possibly_damaging(0.903) TCGA-L5-A4OJ-01 11 89185026 89185026 A G NOX4 Missense_Mutation p.L64P 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A4OJ-01 11 93212196 93212196 G A SMCO4 Missense_Mutation p.R54C 0.56 deleterious(0) unknown(0) TCGA-L5-A4OJ-01 12 106464597 106464597 G A NUAK1 Missense_Mutation p.R263W 0.46 deleterious(0) probably_damaging(1) TCGA-L5-A4OJ-01 12 119594330 119594330 G T SRRM4 Silent p.R521R 0.45 TCGA-L5-A4OJ-01 12 123497206 123497206 G A PITPNM2 Silent p.P123P 0.42 TCGA-L5-A4OJ-01 12 123746286 123746286 G T CDK2AP1 Silent p.S115S 0.22 TCGA-L5-A4OJ-01 12 123829962 123829962 G A SBNO1 Silent p.R131R 0.38 TCGA-L5-A4OJ-01 12 13093711 13093711 A G GPRC5D Nonstop_Mutation p.*346Qext*? 0.05 TCGA-L5-A4OJ-01 12 21953968 21953968 A G ABCC9 3'UTR 0.27 TCGA-L5-A4OJ-01 12 40677810 40677810 G T LRRK2 Missense_Mutation p.R792M 0.34 deleterious(0.04) benign(0.443) TCGA-L5-A4OJ-01 12 422320 422326 CATTCAC - KDM5A Frame_Shift_Del p.V978Kfs*15 0.35 TCGA-L5-A4OJ-01 12 49993827 49993827 C A FAM186B Silent p.R532R 0.33 TCGA-L5-A4OJ-01 12 50043574 50043574 C T FMNL3 Missense_Mutation p.R712H 0.38 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OJ-01 12 72969051 72969051 T A TRHDE Silent p.T671T 0.23 TCGA-L5-A4OJ-01 12 80752038 80752038 T G OTOGL Silent p.S2001S 0.60 TCGA-L5-A4OJ-01 12 81545608 81545608 T C ACSS3 Intron 0.41 TCGA-L5-A4OJ-01 12 88887102 88887102 A G KITLG 3'Flank 0.48 TCGA-L5-A4OJ-01 12 9254054 9254054 A C A2M Missense_Mutation p.F495V 0.27 deleterious(0.01) benign(0.178) TCGA-L5-A4OJ-01 12 97038026 97038026 A C C12orf55 Missense_Mutation p.S1463R 0.74 tolerated(0.26) benign(0.258) TCGA-L5-A4OJ-01 13 36382456 36382456 T G DCLK1 Missense_Mutation p.S590R 0.62 tolerated(0.22) possibly_damaging(0.504) TCGA-L5-A4OJ-01 13 96592236 96592236 T C UGGT2 Missense_Mutation p.H596R 0.70 deleterious(0.01) benign(0.101) TCGA-L5-A4OJ-01 14 105622219 105622219 G A JAG2 Missense_Mutation p.R195C 0.53 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OJ-01 14 105849726 105849726 C T PACS2 Silent p.P552P 0.48 TCGA-L5-A4OJ-01 14 106950223 106950223 T C LINC00221 RNA 0.31 TCGA-L5-A4OJ-01 14 21550545 21550545 A G ARHGEF40 Missense_Mutation p.R1132G 0.53 deleterious(0) benign(0.217) TCGA-L5-A4OJ-01 14 28734247 28734247 A G BNIP3P1 RNA 0.38 TCGA-L5-A4OJ-01 14 33299701 33299701 T - AKAP6 3'UTR 0.28 TCGA-L5-A4OJ-01 14 37754580 37754580 G C MIPOL1 Missense_Mutation p.R184T 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A4OJ-01 14 45542540 45542540 G C FAM179B Missense_Mutation p.E1647Q 0.26 deleterious(0.02) probably_damaging(0.976) TCGA-L5-A4OJ-01 14 47120896 47120896 T C RPL10L Missense_Mutation p.K15R 0.47 deleterious(0.02) probably_damaging(0.987) TCGA-L5-A4OJ-01 14 62550978 62550978 C T SYT16 Missense_Mutation p.S500L 0.36 deleterious(0.01) benign(0.335) TCGA-L5-A4OJ-01 14 94708144 94708144 G T PPP4R4 Missense_Mutation p.Q332H 0.35 deleterious(0) probably_damaging(0.946) TCGA-L5-A4OJ-01 14 94776192 94776192 C A SERPINA6 Missense_Mutation p.M255I 0.42 tolerated(0.1) benign(0.057) TCGA-L5-A4OJ-01 14 99959174 99959174 G A CCNK Missense_Mutation p.A54T 0.36 deleterious(0.01) probably_damaging(0.971) TCGA-L5-A4OJ-01 15 27193133 27193133 A G GABRA5 Missense_Mutation p.K381R 0.31 tolerated(0.63) benign(0.004) TCGA-L5-A4OJ-01 15 27193248 27193248 C A GABRA5 Nonsense_Mutation p.Y419* 0.63 TCGA-L5-A4OJ-01 15 29093679 29093679 G T GOLGA6L7P RNA 0.40 TCGA-L5-A4OJ-01 15 40566472 40566472 C T PAK6 Missense_Mutation p.H625Y 0.34 deleterious(0.02) benign(0.002) TCGA-L5-A4OJ-01 15 44084580 44084580 C T SERF2 Silent p.T2T 0.31 TCGA-L5-A4OJ-01 15 44107214 44107214 C T MFAP1 Missense_Mutation p.V120I 0.43 tolerated(0.2) benign(0.097) TCGA-L5-A4OJ-01 15 48499977 48499977 T C SLC12A1 Missense_Mutation p.F21L 0.33 deleterious(0.01) probably_damaging(0.983) TCGA-L5-A4OJ-01 15 48527094 48527094 T G SLC12A1 Missense_Mutation p.F370V 0.40 deleterious(0.04) probably_damaging(0.949) TCGA-L5-A4OJ-01 15 50870860 50870860 G A TRPM7 Missense_Mutation p.P1532S 0.43 tolerated(0.44) benign(0.002) TCGA-L5-A4OJ-01 15 65667684 65667684 C T IGDCC3 Missense_Mutation p.V54I 0.47 deleterious(0.04) possibly_damaging(0.826) TCGA-L5-A4OJ-01 15 88799256 88799256 G A NTRK3 Silent p.I43I 0.24 TCGA-L5-A4OJ-01 15 90145182 90145182 C G TICRR Missense_Mutation p.R848G 0.53 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OJ-01 16 21854859 21854859 G C NPIPB4 Silent p.S131S 0.15 TCGA-L5-A4OJ-01 16 28515212 28515212 T C IL27 Missense_Mutation p.Q64R 0.28 tolerated(0.13) benign(0.234) TCGA-L5-A4OJ-01 16 4626216 4626216 G A C16orf96 Missense_Mutation p.A579T 0.37 tolerated(0.11) possibly_damaging(0.695) TCGA-L5-A4OJ-01 16 51174409 51174409 G T SALL1 Missense_Mutation p.P575Q 0.60 tolerated(0.07) possibly_damaging(0.726) TCGA-L5-A4OJ-01 16 65016132 65016132 A C CDH11 Missense_Mutation p.F358V 0.60 deleterious(0.01) possibly_damaging(0.473) TCGA-L5-A4OJ-01 16 70819617 70819617 G A VAC14 Silent p.D137D 0.64 TCGA-L5-A4OJ-01 16 75263637 75263637 G A BCAR1 Silent p.I841I 0.78 TCGA-L5-A4OJ-01 16 90229187 90229187 G A RP11-356C4.5 Intron 0.37 TCGA-L5-A4OJ-01 17 26554454 26554454 C T PYY2 RNA 0.31 TCGA-L5-A4OJ-01 17 28295948 28295948 A G EFCAB5 Silent p.P110P 0.60 TCGA-L5-A4OJ-01 17 28960350 28960351 - A LRRC37BP1 RNA 0.29 TCGA-L5-A4OJ-01 17 3346496 3346496 T C SPATA22 Missense_Mutation p.N291S 0.27 tolerated(0.2) benign(0.053) TCGA-L5-A4OJ-01 17 40574673 40574673 C T PTRF Missense_Mutation p.R148H 0.41 deleterious(0) probably_damaging(0.984) TCGA-L5-A4OJ-01 17 41576241 41576241 G A DHX8 Missense_Mutation p.E438K 0.45 deleterious(0.01) probably_damaging(0.94) TCGA-L5-A4OJ-01 17 47128499 47128500 - A IGF2BP1 3'UTR 0.33 TCGA-L5-A4OJ-01 17 47301623 47301623 C A PHOSPHO1 Silent p.V288V 0.44 TCGA-L5-A4OJ-01 17 54672489 54672489 G A NOG 3'UTR 0.29 TCGA-L5-A4OJ-01 17 7138776 7138776 G A PHF23 3'UTR 0.30 TCGA-L5-A4OJ-01 17 71819917 71819917 G A LINC00469 RNA 0.62 TCGA-L5-A4OJ-01 17 73736505 73736505 G A ITGB4 Missense_Mutation p.R838Q 0.62 tolerated(0.07) probably_damaging(0.997) TCGA-L5-A4OJ-01 17 7576921 7576925 GCAGT - TP53 Frame_Shift_Del p.L308Qfs*27 0.41 TCGA-L5-A4OJ-01 17 7577520 7577521 - TGG TP53 In_Frame_Ins p.T253dup 0.53 TCGA-L5-A4OJ-01 17 7578257 7578257 C A TP53 Nonsense_Mutation p.E198* 0.34 TCGA-L5-A4OJ-01 18 5397308 5397308 C T EPB41L3 Missense_Mutation p.V864M 0.29 tolerated(0.1) benign(0.059) TCGA-L5-A4OJ-01 18 56203296 56203296 C G ALPK2 Missense_Mutation p.D1375H 0.35 tolerated(0.06) possibly_damaging(0.625) TCGA-L5-A4OJ-01 18 56825870 56825871 - T SEC11C Frame_Shift_Ins p.L179Ffs*13 0.29 TCGA-L5-A4OJ-01 18 60527822 60527822 A C PHLPP1 Missense_Mutation p.N685T 0.27 tolerated(0.36) benign(0.065) TCGA-L5-A4OJ-01 18 61064444 61064444 G A VPS4B Silent p.A305A 0.32 TCGA-L5-A4OJ-01 18 67508927 67508927 A C DOK6 3'UTR 0.64 TCGA-L5-A4OJ-01 18 6898517 6898517 A G ARHGAP28 Intron 0.31 TCGA-L5-A4OJ-01 18 6959467 6959467 C T LAMA1 Missense_Mutation p.G2551R 0.21 tolerated(0.48) benign(0.166) TCGA-L5-A4OJ-01 18 9887085 9887085 G A TXNDC2 Silent p.Q203Q 0.22 TCGA-L5-A4OJ-01 19 10559772 10559772 G A PDE4A Missense_Mutation p.R189Q 0.38 deleterious(0.03) probably_damaging(0.956) TCGA-L5-A4OJ-01 19 16279082 16279082 C T CIB3 Missense_Mutation p.R71H 0.17 deleterious(0.02) possibly_damaging(0.891) TCGA-L5-A4OJ-01 19 16620485 16620485 C T C19orf44 Missense_Mutation p.S442F 0.39 tolerated(0.06) benign(0.022) TCGA-L5-A4OJ-01 19 21990293 21990293 T G ZNF43 3'UTR 0.53 TCGA-L5-A4OJ-01 19 22255698 22255698 G T ZNF257 Missense_Mutation p.D31Y 0.42 deleterious(0) possibly_damaging(0.851) TCGA-L5-A4OJ-01 19 2255274 2255274 C T JSRP1 Missense_Mutation p.G14S 0.29 deleterious(0.01) probably_damaging(0.972) TCGA-L5-A4OJ-01 19 24309740 24309740 A G ZNF254 Missense_Mutation p.K313R 0.54 tolerated(0.06) benign(0.193) TCGA-L5-A4OJ-01 19 35850546 35850546 G A FFAR3 Missense_Mutation p.G252S 0.26 tolerated(0.36) benign(0.045) TCGA-L5-A4OJ-01 19 3752887 3752887 C T APBA3 Silent p.P371P 0.33 TCGA-L5-A4OJ-01 19 39799033 39799033 C T LRFN1 Missense_Mutation p.G519E 0.47 tolerated(1) benign(0.017) TCGA-L5-A4OJ-01 19 40364341 40364341 C T FCGBP Silent p.S4767S 0.33 TCGA-L5-A4OJ-01 19 41284251 41284251 A G RAB4B 5'UTR 0.33 TCGA-L5-A4OJ-01 19 41631428 41631428 G A CYP2F1 Missense_Mutation p.V395I 0.16 tolerated(0.06) probably_damaging(0.934) TCGA-L5-A4OJ-01 19 42525545 42525545 G T GRIK5 Silent p.G593G 0.31 TCGA-L5-A4OJ-01 19 45976538 45976538 C T FOSB 3'UTR 0.28 TCGA-L5-A4OJ-01 19 49207047 49207048 CA - FUT2 Frame_Shift_Del p.Q280Vfs*2 0.31 TCGA-L5-A4OJ-01 19 5119174 5119174 G A KDM4B Intron 0.33 TCGA-L5-A4OJ-01 19 52394846 52394846 A G ZNF649 Silent p.T181T 0.32 TCGA-L5-A4OJ-01 19 53342993 53342993 C A ZNF468 3'UTR 0.10 TCGA-L5-A4OJ-01 19 54672292 54672292 C T TMC4 Missense_Mutation p.G192E 0.17 tolerated(1) benign(0.001) TCGA-L5-A4OJ-01 19 54756400 54756400 C T LILRB5 Missense_Mutation p.R496H 0.47 tolerated(0.56) benign(0.006) TCGA-L5-A4OJ-01 19 5951456 5951456 G A RANBP3 Missense_Mutation p.P77L 0.42 tolerated_low_confidence(0.49) benign(0.012) TCGA-L5-A4OJ-01 19 9019293 9019293 A G MUC16 Missense_Mutation p.S12532P 0.35 benign(0.026) TCGA-L5-A4OJ-01 19 9074068 9074068 A T MUC16 Missense_Mutation p.L4460M 0.30 unknown(0) TCGA-L5-A4OJ-01 19 9089865 9089865 G A MUC16 Silent p.S650S 0.36 TCGA-L5-A4OJ-01 1 103471658 103471658 C G COL11A1 Missense_Mutation p.G586A 0.37 unknown(0) TCGA-L5-A4OJ-01 1 111861192 111861192 C A CHIA Missense_Mutation p.H269Q 0.46 deleterious(0.03) benign(0.301) TCGA-L5-A4OJ-01 1 1269397 1269397 G A TAS1R3 Silent p.P704P 0.30 TCGA-L5-A4OJ-01 1 144520978 144520978 G T AL592284.1 3'UTR 0.52 TCGA-L5-A4OJ-01 1 145539689 145539689 A G ITGA10 Missense_Mutation p.S1041G 0.54 deleterious(0.01) benign(0.072) TCGA-L5-A4OJ-01 1 149898421 149898421 C T SF3B4 Missense_Mutation p.E185K 0.20 deleterious(0.01) probably_damaging(0.917) TCGA-L5-A4OJ-01 1 150470031 150470031 C G TARS2 Missense_Mutation p.S349C 0.25 deleterious(0.05) probably_damaging(0.954) TCGA-L5-A4OJ-01 1 153275083 153275083 A G PGLYRP3 Missense_Mutation p.V177A 0.50 tolerated(1) benign(0.002) TCGA-L5-A4OJ-01 1 154492834 154492834 C T TDRD10 Nonsense_Mutation p.Q66* 0.24 TCGA-L5-A4OJ-01 1 158325803 158325803 C A CD1E Missense_Mutation p.A271E 0.44 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OJ-01 1 158735897 158735897 C T OR6N1 Silent p.T192T 0.50 TCGA-L5-A4OJ-01 1 160098836 160098836 G A ATP1A2 Missense_Mutation p.R428H 0.23 deleterious(0.03) benign(0.118) TCGA-L5-A4OJ-01 1 166892005 166892005 C A ILDR2 Missense_Mutation p.D346Y 0.52 deleterious(0) probably_damaging(0.95) TCGA-L5-A4OJ-01 1 176845742 176845742 G A ASTN1 Missense_Mutation p.R1132W 0.56 deleterious(0) probably_damaging(0.993) TCGA-L5-A4OJ-01 1 179783228 179783228 C T FAM163A Silent p.S136S 0.23 TCGA-L5-A4OJ-01 1 181769190 181769190 G T CACNA1E 3'Flank 0.54 TCGA-L5-A4OJ-01 1 186094842 186094843 - A HMCN1 Frame_Shift_Ins p.D4205Rfs*7 0.48 TCGA-L5-A4OJ-01 1 196952103 196952103 A C CFHR5 Missense_Mutation p.E49D 0.73 deleterious(0.05) benign(0.192) TCGA-L5-A4OJ-01 1 229781688 229781688 C T URB2 Missense_Mutation p.A1293V 0.47 tolerated(0.38) benign(0.016) TCGA-L5-A4OJ-01 1 233511698 233511699 AC - MLK4 Frame_Shift_Del p.T572Sfs*8 0.44 TCGA-L5-A4OJ-01 1 248343315 248343315 T G OR2M2 Missense_Mutation p.S10A 0.52 tolerated(0.19) benign(0.206) TCGA-L5-A4OJ-01 1 248551709 248551709 C T OR2T6 Missense_Mutation p.T267I 0.52 deleterious(0.01) possibly_damaging(0.883) TCGA-L5-A4OJ-01 1 27101252 27101252 C T ARID1A Nonsense_Mutation p.Q1512* 0.39 TCGA-L5-A4OJ-01 1 33161294 33161294 G A SYNC Silent p.H135H 0.39 TCGA-L5-A4OJ-01 1 62902385 62902385 C T USP1 5'UTR 0.30 TCGA-L5-A4OJ-01 1 71477998 71477998 T G PTGER3 Missense_Mutation p.K356T 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OJ-01 1 7792537 7792537 C T CAMTA1 Nonsense_Mutation p.R982* 0.21 TCGA-L5-A4OJ-01 1 85656020 85656020 C A SYDE2 Missense_Mutation p.L387F 0.42 tolerated_low_confidence(0.21) benign(0.169) TCGA-L5-A4OJ-01 1 90178646 90178646 C T LRRC8C Missense_Mutation p.R173W 0.32 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OJ-01 1 94650552 94650552 A C ARHGAP29 Missense_Mutation p.L662R 0.48 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OJ-01 20 23066708 23066708 G A CD93 Missense_Mutation p.S41L 0.36 tolerated(0.33) benign(0) TCGA-L5-A4OJ-01 20 3804698 3804698 G T AP5S1 Silent p.S119S 0.31 TCGA-L5-A4OJ-01 20 55918624 55918624 A C SPO11 3'UTR 0.36 TCGA-L5-A4OJ-01 20 62127339 62127339 G A EEF1A2 Missense_Mutation p.A65V 0.29 deleterious_low_confidence(0.01) benign(0.07) TCGA-L5-A4OJ-01 20 62729766 62729766 C T OPRL1 Missense_Mutation p.R243C 0.38 deleterious(0) probably_damaging(0.959) TCGA-L5-A4OJ-01 21 14417520 14417520 A G RNU6-614P 5'Flank 0.22 TCGA-L5-A4OJ-01 21 38853058 38853059 - A DYRK1A Frame_Shift_Ins p.N151Kfs*12 0.20 TCGA-L5-A4OJ-01 21 43240471 43240471 C T PRDM15 Missense_Mutation p.R1073H 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OJ-01 21 46021305 46021305 A C KRTAP10-7 Missense_Mutation p.T262P 0.42 tolerated(0.08) unknown(0) TCGA-L5-A4OJ-01 21 46078017 46078017 A G KRTAP12-3 Missense_Mutation p.T41A 0.28 tolerated(0.12) benign(0.058) TCGA-L5-A4OJ-01 22 17983960 17983960 G A CECR2 Missense_Mutation p.R220H 0.43 deleterious(0) possibly_damaging(0.907) TCGA-L5-A4OJ-01 22 26423549 26423549 G A MYO18B Missense_Mutation p.G2537S 0.36 tolerated(0.09) benign(0.374) TCGA-L5-A4OJ-01 22 28497217 28497217 C T TTC28 Missense_Mutation p.R1120H 0.33 deleterious(0.05) possibly_damaging(0.684) TCGA-L5-A4OJ-01 22 37770495 37770495 G A ELFN2 Silent p.C360C 0.29 TCGA-L5-A4OJ-01 22 38894461 38894461 G C DDX17 Missense_Mutation p.S219C 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A4OJ-01 22 39262762 39262762 C T CBX6 Missense_Mutation p.A231T 0.45 tolerated(0.65) benign(0) TCGA-L5-A4OJ-01 2 112605344 112605344 G T ANAPC1 Nonsense_Mutation p.Y583* 0.39 TCGA-L5-A4OJ-01 2 113147112 113147112 G T RGPD8 Missense_Mutation p.S1137Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OJ-01 2 120404598 120404598 G A PCDP1 Missense_Mutation p.E764K 0.31 deleterious(0.01) possibly_damaging(0.839) TCGA-L5-A4OJ-01 2 138320876 138320876 A G THSD7B Missense_Mutation p.E1078G 0.23 deleterious(0.01) unknown(0) TCGA-L5-A4OJ-01 2 1459994 1459994 C T TPO Silent p.F253F 0.50 TCGA-L5-A4OJ-01 2 160692031 160692031 G A LY75-CD302 Silent p.C1211C 0.42 TCGA-L5-A4OJ-01 2 166535293 166535293 G A CSRNP3 Missense_Mutation p.R263H 0.33 deleterious(0) possibly_damaging(0.754) TCGA-L5-A4OJ-01 2 168100411 168100411 G T XIRP2 Missense_Mutation p.D837Y 0.41 probably_damaging(1) TCGA-L5-A4OJ-01 2 175333663 175333663 T G GPR155 Missense_Mutation p.S387R 0.31 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OJ-01 2 175436912 175436912 G A WIPF1 Silent p.P207P 0.35 TCGA-L5-A4OJ-01 2 179590609 179590609 A C TTN Missense_Mutation p.F6814V 0.38 TCGA-L5-A4OJ-01 2 179649066 179649066 C T TTN Missense_Mutation p.G836S 0.29 TCGA-L5-A4OJ-01 2 179825996 179825996 T G CCDC141 Missense_Mutation p.Q247H 0.37 tolerated(0.05) benign(0.229) TCGA-L5-A4OJ-01 2 185802136 185802136 A C ZNF804A Missense_Mutation p.E671D 0.41 tolerated(0.15) benign(0.008) TCGA-L5-A4OJ-01 2 197986194 197986194 G A ANKRD44 Silent p.N256N 0.52 TCGA-L5-A4OJ-01 2 203693680 203693680 C T ICA1L Missense_Mutation p.R18K 0.30 tolerated(0.98) benign(0.143) TCGA-L5-A4OJ-01 2 204801509 204801509 G A ICOS 5'UTR 0.31 TCGA-L5-A4OJ-01 2 209045468 209045468 C T C2orf80 Splice_Site p.X122_splice 0.38 TCGA-L5-A4OJ-01 2 212251633 212251633 T C ERBB4 Silent p.R1142R 0.42 TCGA-L5-A4OJ-01 2 220162791 220162791 G A PTPRN Missense_Mutation p.A568V 0.33 tolerated(0.15) benign(0.009) TCGA-L5-A4OJ-01 2 27886964 27886964 G A SLC4A1AP Silent p.E115E 0.55 TCGA-L5-A4OJ-01 2 30381857 30381857 T G YPEL5 3'UTR 0.42 TCGA-L5-A4OJ-01 2 30381858 30381858 T C YPEL5 3'UTR 0.40 TCGA-L5-A4OJ-01 2 46412519 46412519 G T PRKCE 3'UTR 0.36 TCGA-L5-A4OJ-01 2 48808901 48808901 A C STON1-GTF2A1L Missense_Mutation p.K377Q 0.28 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OJ-01 2 49195944 49195944 A C FSHR Silent p.T249T 0.40 TCGA-L5-A4OJ-01 2 69732700 69732700 C T AAK1 Splice_Site p.X757_splice 0.16 TCGA-L5-A4OJ-01 2 70131593 70131593 T G SNRNP27 3'UTR 0.52 TCGA-L5-A4OJ-01 2 77746109 77746109 T C LRRTM4 Missense_Mutation p.T296A 0.34 tolerated(0.46) benign(0.217) TCGA-L5-A4OJ-01 3 108287026 108287026 C A KIAA1524 Missense_Mutation p.A417S 0.24 tolerated(0.95) benign(0.015) TCGA-L5-A4OJ-01 3 12858855 12858855 G A CAND2 Silent p.V808V 0.31 TCGA-L5-A4OJ-01 3 134978457 134978457 T G EPHB1 3'UTR 0.44 TCGA-L5-A4OJ-01 3 140660731 140660731 C T SLC25A36 5'UTR 0.62 TCGA-L5-A4OJ-01 3 15609465 15609465 A C HACL1 Missense_Mutation p.F432C 0.40 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OJ-01 3 160167557 160167557 G C TRIM59 5'UTR 0.33 TCGA-L5-A4OJ-01 3 171064843 171064844 - T TNIK Intron 0.24 TCGA-L5-A4OJ-01 3 41266610 41266610 T C CTNNB1 Missense_Mutation p.V136A 0.72 tolerated(0.16) benign(0.334) TCGA-L5-A4OJ-01 3 43121854 43121854 C T POMGNT2 Missense_Mutation p.R357H 0.85 tolerated(0.13) probably_damaging(0.956) TCGA-L5-A4OJ-01 3 75471326 75471326 C G FAM86DP RNA 0.25 TCGA-L5-A4OJ-01 4 126372688 126372688 A C FAT4 Missense_Mutation p.N3506T 0.29 probably_damaging(0.996) TCGA-L5-A4OJ-01 4 13543578 13543578 G A NKX3-2 3'UTR 0.28 TCGA-L5-A4OJ-01 4 146064566 146064566 G A OTUD4 Missense_Mutation p.S480L 0.28 deleterious(0.01) benign(0.023) TCGA-L5-A4OJ-01 4 162697220 162697220 T C FSTL5 Missense_Mutation p.K139R 0.25 tolerated(0.5) benign(0) TCGA-L5-A4OJ-01 4 187629119 187629119 C T FAT1 Silent p.S621S 0.18 TCGA-L5-A4OJ-01 4 189012836 189012836 G A TRIML2 Silent p.S285S 0.38 TCGA-L5-A4OJ-01 4 46252548 46252548 A G GABRA2 Missense_Mutation p.L378P 0.41 tolerated(0.09) benign(0.012) TCGA-L5-A4OJ-01 4 70080365 70080365 C A UGT2B11 Missense_Mutation p.V26L 0.34 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A4OJ-01 5 127645012 127645012 C A FBN2 Missense_Mutation p.R1760S 0.77 deleterious(0.01) benign(0.309) TCGA-L5-A4OJ-01 5 13736028 13736028 G T DNAH5 Silent p.G3823G 0.28 TCGA-L5-A4OJ-01 5 13793813 13793813 G T DNAH5 Missense_Mutation p.L2679M 0.50 possibly_damaging(0.887) TCGA-L5-A4OJ-01 5 140257158 140257158 A G PCDHA12 Missense_Mutation p.I701V 0.64 tolerated_low_confidence(0.12) benign(0.277) TCGA-L5-A4OJ-01 5 140482553 140482553 T G PCDHB3 Missense_Mutation p.F774V 0.59 tolerated_low_confidence(0.13) benign(0.012) TCGA-L5-A4OJ-01 5 140558592 140558592 G A PCDHB8 Missense_Mutation p.G326E 0.27 deleterious_low_confidence(0) probably_damaging(0.957) TCGA-L5-A4OJ-01 5 176008504 176008504 G A CDHR2 Missense_Mutation p.R660H 0.50 tolerated(0.07) benign(0.117) TCGA-L5-A4OJ-01 5 31267714 31267714 A C CDH6 Missense_Mutation p.K45T 0.41 tolerated(0.59) benign(0.047) TCGA-L5-A4OJ-01 5 31318069 31318069 G T CDH6 Intron 0.33 TCGA-L5-A4OJ-01 5 79027139 79027140 - CATC CMYA5 Frame_Shift_Ins p.E853Ifs*2 0.67 TCGA-L5-A4OJ-01 6 135239827 135239827 G A ALDH8A1 Missense_Mutation p.T397M 0.43 deleterious(0) probably_damaging(0.934) TCGA-L5-A4OJ-01 6 151857458 151857458 T G CCDC170 Silent p.T21T 0.29 TCGA-L5-A4OJ-01 6 152737805 152737805 C A SYNE1 Missense_Mutation p.A1923S 0.27 benign(0.088) TCGA-L5-A4OJ-01 6 152738136 152738136 T G SYNE1 Missense_Mutation p.E1812D 0.40 probably_damaging(0.937) TCGA-L5-A4OJ-01 6 154331768 154331768 A G OPRM1 5'UTR 0.53 TCGA-L5-A4OJ-01 6 163985593 163985593 A G QKI Intron 0.50 TCGA-L5-A4OJ-01 6 168475955 168475955 C T FRMD1 Missense_Mutation p.A92T 0.40 tolerated(0.26) benign(0.015) TCGA-L5-A4OJ-01 6 24547478 24547478 T A KIAA0319 Missense_Mutation p.K1045M 0.32 deleterious(0.01) possibly_damaging(0.606) TCGA-L5-A4OJ-01 6 25620262 25620262 C G LRRC16A 3'UTR 0.35 TCGA-L5-A4OJ-01 6 2900764 2900764 C T SERPINB9 Missense_Mutation p.V28M 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-L5-A4OJ-01 6 3225656 3225656 C T TUBB2B Missense_Mutation p.G223R 0.37 deleterious_low_confidence(0.05) probably_damaging(0.947) TCGA-L5-A4OJ-01 6 37606423 37606423 G A MDGA1 Missense_Mutation p.R853W 0.58 deleterious(0) probably_damaging(0.96) TCGA-L5-A4OJ-01 6 37626178 37626178 C T MDGA1 Silent p.T75T 0.29 TCGA-L5-A4OJ-01 6 50683161 50683161 G A TFAP2D Silent p.S124S 0.47 TCGA-L5-A4OJ-01 6 51656050 51656050 G A PKHD1 Silent p.G2808G 0.36 TCGA-L5-A4OJ-01 6 97561721 97561721 C T KLHL32 Silent p.Y230Y 0.35 TCGA-L5-A4OJ-01 7 100677506 100677506 G C MUC17 Missense_Mutation p.V937L 0.47 benign(0.023) TCGA-L5-A4OJ-01 7 111368651 111368651 C T DOCK4 Silent p.S1860S 0.32 TCGA-L5-A4OJ-01 7 113518469 113518469 T C PPP1R3A Missense_Mutation p.D893G 0.21 tolerated(0.18) benign(0.006) TCGA-L5-A4OJ-01 7 120655798 120655798 C A CPED1 Missense_Mutation p.T110K 0.36 tolerated(0.26) benign(0.002) TCGA-L5-A4OJ-01 7 138189052 138189052 C T TRIM24 Missense_Mutation p.P128S 0.16 tolerated(0.15) possibly_damaging(0.688) TCGA-L5-A4OJ-01 7 150716292 150716292 G A ATG9B Missense_Mutation p.P378L 0.17 deleterious(0) probably_damaging(0.985) TCGA-L5-A4OJ-01 7 1785372 1785372 C T ELFN1 Silent p.C380C 0.30 TCGA-L5-A4OJ-01 7 19156534 19156534 C T TWIST1 Silent p.T137T 0.56 TCGA-L5-A4OJ-01 7 4799119 4799119 C T FOXK1 Missense_Mutation p.T530I 0.34 deleterious(0.03) benign(0.027) TCGA-L5-A4OJ-01 7 72849881 72849881 T C FZD9 Missense_Mutation p.F515S 0.32 deleterious(0.04) probably_damaging(0.996) TCGA-L5-A4OJ-01 7 82578830 82578830 T G PCLO Missense_Mutation p.S3692R 0.41 unknown(0) TCGA-L5-A4OJ-01 7 82791891 82791891 G T PCLO Missense_Mutation p.S6R 0.50 unknown(0) TCGA-L5-A4OJ-01 7 86273995 86273995 A C GRM3 5'UTR 0.44 TCGA-L5-A4OJ-01 7 88966323 88966323 A C ZNF804B Missense_Mutation p.N1343H 0.39 tolerated(0.06) benign(0.132) TCGA-L5-A4OJ-01 7 99123486 99123486 G T ZKSCAN5 Missense_Mutation p.D275Y 0.45 deleterious(0.03) benign(0.423) TCGA-L5-A4OJ-01 8 10465226 10465226 C T RP1L1 Missense_Mutation p.E2128K 0.10 unknown(0) TCGA-L5-A4OJ-01 8 12040796 12040796 G A FAM86B1 3'UTR 0.60 TCGA-L5-A4OJ-01 8 12040810 12040810 T G FAM86B1 3'UTR 0.59 TCGA-L5-A4OJ-01 8 143561135 143561135 G A BAI1 Missense_Mutation p.R603Q 0.68 tolerated(0.1) possibly_damaging(0.553) TCGA-L5-A4OJ-01 8 2092797 2092797 C T MYOM2 Silent p.D1430D 0.56 TCGA-L5-A4OJ-01 8 35651021 35651021 T A UNC5D 3'Flank 0.37 TCGA-L5-A4OJ-01 8 51617305 51617305 G A SNTG1 Missense_Mutation p.R395Q 0.24 deleterious(0.01) probably_damaging(0.909) TCGA-L5-A4OJ-01 8 56015110 56015110 C T XKR4 Missense_Mutation p.P21L 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.726) TCGA-L5-A4OJ-01 8 60031543 60031543 C A TOX Missense_Mutation p.D2Y 0.19 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OJ-01 8 65496011 65496011 A G BHLHE22 3'UTR 0.25 TCGA-L5-A4OJ-01 9 107331770 107331770 G A OR13C8 Missense_Mutation p.G108R 0.39 deleterious(0.01) probably_damaging(0.941) TCGA-L5-A4OJ-01 9 113704324 113704324 A T LPAR1 Missense_Mutation p.I57N 0.33 deleterious(0.01) possibly_damaging(0.564) TCGA-L5-A4OJ-01 9 123888117 123888117 G A CNTRL Missense_Mutation p.R643Q 0.35 benign(0) TCGA-L5-A4OJ-01 9 129455488 129455488 C T LMX1B Silent p.S209S 0.55 TCGA-L5-A4OJ-01 9 129600403 129600403 T C ZBTB43 3'UTR 0.31 TCGA-L5-A4OJ-01 9 17135344 17135345 - A CNTLN Frame_Shift_Ins p.E95Rfs*28 0.33 TCGA-L5-A4OJ-01 9 21217165 21217165 A C IFNA16 Missense_Mutation p.I47S 0.38 deleterious(0) benign(0.29) TCGA-L5-A4OJ-01 9 27455333 27455333 G A MOB3B Silent p.N72N 0.39 TCGA-L5-A4OJ-01 9 32630161 32630161 C A TAF1L Missense_Mutation p.R1806I 0.43 tolerated_low_confidence(0.1) benign(0.007) TCGA-L5-A4OJ-01 9 6013410 6013410 T G RANBP6 Missense_Mutation p.E733A 0.11 deleterious(0.03) benign(0.285) TCGA-L5-A4OJ-01 9 67785259 67785259 A T FAM27E3 3'UTR 0.25 TCGA-L5-A4OJ-01 9 90503319 90503319 G T SPATA31E1 Missense_Mutation p.R1306M 0.64 deleterious(0) possibly_damaging(0.854) TCGA-L5-A4OJ-01 9 95482726 95482726 G A BICD2 Silent p.G306G 0.45 TCGA-L5-A4OJ-01 X 10437871 10437871 G T MID1 Missense_Mutation p.P384H 0.30 deleterious(0) possibly_damaging(0.844) TCGA-L5-A4OJ-01 X 107159335 107159335 C A MID2 Missense_Mutation p.L393I 0.32 tolerated(0.1) benign(0.149) TCGA-L5-A4OJ-01 X 114143143 114143143 A C HTR2C 3'UTR 0.37 TCGA-L5-A4OJ-01 X 114242551 114242551 A C IL13RA2 Missense_Mutation p.I314S 0.37 deleterious(0) benign(0.016) TCGA-L5-A4OJ-01 X 114424873 114424873 A G RBMXL3 Missense_Mutation p.E290G 0.33 deleterious_low_confidence(0.03) benign(0.003) TCGA-L5-A4OJ-01 X 119293306 119293306 C T RHOXF2 Silent p.R155R 0.18 TCGA-L5-A4OJ-01 X 123514857 123514857 C A TENM1 Silent p.G2576G 0.44 TCGA-L5-A4OJ-01 X 128940327 128940327 A C ZDHHC9 3'UTR 0.16 TCGA-L5-A4OJ-01 X 134427910 134427910 A C ZNF75D Missense_Mutation p.W53G 0.37 deleterious(0.01) benign(0.123) TCGA-L5-A4OJ-01 X 135126796 135126796 C T SLC9A6 Silent p.V673V 0.34 TCGA-L5-A4OJ-01 X 137715091 137715091 T G FGF13 Missense_Mutation p.S230R 0.22 tolerated_low_confidence(0.09) benign(0.028) TCGA-L5-A4OJ-01 X 148074183 148074183 G C AFF2 3'UTR 0.32 TCGA-L5-A4OJ-01 X 148561595 148561595 G A IDS 3'UTR 0.43 TCGA-L5-A4OJ-01 X 150869442 150869442 T G PRRG3 Silent p.S211S 0.56 TCGA-L5-A4OJ-01 X 150884596 150884596 C A FATE1 Missense_Mutation p.A2E 0.28 deleterious(0) probably_damaging(0.976) TCGA-L5-A4OJ-01 X 151304073 151304073 C T MAGEA10 Missense_Mutation p.R7H 0.37 tolerated(0.27) probably_damaging(0.98) TCGA-L5-A4OJ-01 X 152614864 152614864 T G ZNF275 3'UTR 0.52 TCGA-L5-A4OJ-01 X 15332620 15332620 G A ASB11 Intron 0.35 TCGA-L5-A4OJ-01 X 19554131 19554131 A T SH3KBP1 3'UTR 0.37 TCGA-L5-A4OJ-01 X 22151693 22151693 A G PHEX Silent p.K452K 0.42 TCGA-L5-A4OJ-01 X 37028366 37028366 C T FAM47C Missense_Mutation p.S628F 0.43 deleterious(0.03) possibly_damaging(0.865) TCGA-L5-A4OJ-01 X 46522028 46522028 C T SLC9A7 Missense_Mutation p.A282T 0.69 tolerated(0.18) benign(0.229) TCGA-L5-A4OJ-01 X 47046044 47046044 G A RBM10 3'UTR 0.20 TCGA-L5-A4OJ-01 X 47426460 47426460 A C ARAF Missense_Mutation p.K268T 0.52 tolerated(0.52) benign(0.272) TCGA-L5-A4OJ-01 X 48819729 48819730 - G KCND1 3'UTR 0.27 TCGA-L5-A4OJ-01 X 48847591 48847591 G C GRIPAP1 Intron 0.39 TCGA-L5-A4OJ-01 X 53263497 53263497 G A IQSEC2 Silent p.P1457P 0.58 TCGA-L5-A4OJ-01 X 53457373 53457373 T C RIBC1 Silent p.C231C 0.39 TCGA-L5-A4OJ-01 X 53575167 53575167 C T HUWE1 Missense_Mutation p.G3368D 0.48 benign(0.001) TCGA-L5-A4OJ-01 X 53658551 53658551 G T HUWE1 Missense_Mutation p.L221I 0.34 benign(0.406) TCGA-L5-A4OJ-01 X 63444240 63444240 A C ASB12 Missense_Mutation p.I311S 0.30 tolerated(0.11) probably_damaging(0.996) TCGA-L5-A4OJ-01 X 64139828 64139828 G T ZC4H2 Intron 0.60 TCGA-L5-A4OJ-01 X 69260941 69260941 G A AWAT2 3'UTR 0.31 TCGA-L5-A4OJ-01 X 69283089 69283089 G T OTUD6A Missense_Mutation p.D239Y 0.47 tolerated(0.06) benign(0.09) TCGA-L5-A4OJ-01 X 70503411 70503411 T G NONO 5'Flank 0.50 TCGA-L5-A4OJ-01 X 73069583 73069583 A G XIST RNA 0.36 TCGA-L5-A4OJ-01 X 77912922 77912922 G T ZCCHC5 Silent p.L332L 0.30 TCGA-L5-A4OJ-01 X 79699416 79699417 - T FAM46D 3'UTR 0.31 TCGA-L5-A4OJ-01 X 79699805 79699805 A G FAM46D 3'UTR 0.52 TCGA-L5-A4OJ-01 X 79939516 79939516 T C BRWD3 Missense_Mutation p.K1409R 0.37 tolerated(0.99) benign(0.107) TCGA-L5-A4OJ-01 X 79947627 79947627 T A BRWD3 Nonsense_Mutation p.K1096* 0.44 TCGA-L5-A4OJ-01 X 91878049 91878049 G A PCDH11X 3'UTR 0.37 TCGA-L5-A4OJ-01 X 92928150 92928150 T C NAP1L3 Missense_Mutation p.S52G 0.42 tolerated(0.16) possibly_damaging(0.483) TCGA-L5-A4OJ-01 X 9864214 9864214 G C SHROOM2 Missense_Mutation p.A756P 0.38 tolerated(0.08) benign(0.307) TCGA-L5-A4OM-01 10 18292265 18292265 T C SLC39A12 Missense_Mutation p.L642S 0.17 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OM-01 10 22031223 22031223 T C MLLT10 3'UTR 0.19 TCGA-L5-A4OM-01 10 49951516 49951516 G A WDFY4 Silent p.P794P 0.45 TCGA-L5-A4OM-01 10 50902828 50902828 G A C10orf53 Intron 0.29 TCGA-L5-A4OM-01 11 36422705 36422705 G A PRR5L Missense_Mutation p.E12K 0.41 tolerated_low_confidence(0.07) benign(0.054) TCGA-L5-A4OM-01 11 43364101 43364101 A G API5 3'UTR 0.41 TCGA-L5-A4OM-01 11 51515594 51515594 T C OR4C46 Missense_Mutation p.F105L 0.24 tolerated_low_confidence(0.16) benign(0.02) TCGA-L5-A4OM-01 11 621243 621243 G A CDHR5 Missense_Mutation p.P209L 0.17 tolerated(0.32) benign(0.209) TCGA-L5-A4OM-01 11 62362771 62362771 T C MTA2 Missense_Mutation p.Y483C 0.30 tolerated(0.07) possibly_damaging(0.781) TCGA-L5-A4OM-01 11 64606671 64606671 T A CDC42BPG Missense_Mutation p.Y237F 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OM-01 11 6789646 6789646 G A OR2AG2 Silent p.I181I 0.41 TCGA-L5-A4OM-01 12 112717042 112717042 T C HECTD4 Silent p.S415S 0.37 TCGA-L5-A4OM-01 12 54764422 54764422 G A ZNF385A Silent p.A306A 0.28 TCGA-L5-A4OM-01 12 81205437 81205437 T G LIN7A Missense_Mutation p.K170T 0.43 deleterious(0) benign(0.185) TCGA-L5-A4OM-01 13 25744194 25744194 C T AMER2 Missense_Mutation p.E522K 0.28 deleterious(0.01) possibly_damaging(0.741) TCGA-L5-A4OM-01 13 29675026 29675026 G A MTUS2 Missense_Mutation p.V865I 0.16 tolerated(0.05) possibly_damaging(0.467) TCGA-L5-A4OM-01 13 50591278 50591278 A G TRIM13 3'Flank 0.35 TCGA-L5-A4OM-01 14 104199926 104199926 C T ZFYVE21 3'UTR 0.35 TCGA-L5-A4OM-01 14 60212843 60212843 T G RTN1 Missense_Mutation p.T200P 0.43 deleterious(0.01) benign(0.265) TCGA-L5-A4OM-01 14 74551066 74551066 C T ALDH6A1 Missense_Mutation p.R11Q 0.11 tolerated(0.1) unknown(0) TCGA-L5-A4OM-01 14 75320932 75320932 A T PROX2 3'UTR 0.37 TCGA-L5-A4OM-01 14 75413456 75413456 G T PGF Intron 0.21 TCGA-L5-A4OM-01 15 43654034 43654034 C A ZSCAN29 Missense_Mutation p.R599L 0.29 tolerated(0.14) benign(0.039) TCGA-L5-A4OM-01 15 83333651 83333653 CTC - AP3B2 In_Frame_Del p.E672del 0.42 TCGA-L5-A4OM-01 16 28617218 28617218 G A SULT1A1 Missense_Mutation p.A271V 0.18 deleterious(0.03) benign(0.133) TCGA-L5-A4OM-01 16 67354649 67354649 G A KCTD19 Missense_Mutation p.S48F 0.13 deleterious(0.04) benign(0.409) TCGA-L5-A4OM-01 17 18874806 18874806 G A FAM83G Missense_Mutation p.P780S 0.05 tolerated(0.63) benign(0.004) TCGA-L5-A4OM-01 17 48774476 48774476 A C ANKRD40 Missense_Mutation p.V262G 0.23 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OM-01 17 66527600 66527600 A T PRKAR1A 3'UTR 0.24 TCGA-L5-A4OM-01 17 7578370 7578370 C T TP53 Splice_Site p.X187_splice 0.80 TCGA-L5-A4OM-01 17 80037129 80037129 C T FASN Missense_Mutation p.V2476I 0.18 tolerated(0.29) benign(0.004) TCGA-L5-A4OM-01 18 18530348 18530348 G A ROCK1 3'UTR 0.29 TCGA-L5-A4OM-01 18 18530962 18530962 G C ROCK1 3'UTR 0.30 TCGA-L5-A4OM-01 18 18530984 18530984 G A ROCK1 3'UTR 0.23 TCGA-L5-A4OM-01 18 19429195 19429195 A T MIB1 Missense_Mutation p.N811I 0.28 tolerated(0.11) benign(0.004) TCGA-L5-A4OM-01 18 52571492 52571492 A T CCDC68 3'UTR 0.42 TCGA-L5-A4OM-01 19 19330103 19330103 C A NCAN Missense_Mutation p.D151E 0.13 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OM-01 19 22155555 22155555 A G ZNF208 Missense_Mutation p.S761P 0.41 tolerated(0.18) benign(0) TCGA-L5-A4OM-01 19 49377829 49377829 G T PPP1R15A Missense_Mutation p.D447Y 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-L5-A4OM-01 19 52034113 52034113 C T SIGLEC6 Silent p.T176T 0.28 TCGA-L5-A4OM-01 19 54720935 54720935 G A LILRB3 3'UTR 0.07 TCGA-L5-A4OM-01 1 120165681 120165681 G A ZNF697 Missense_Mutation p.R429C 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OM-01 1 155630265 155630265 G C YY1AP1 Missense_Mutation p.S617C 0.33 tolerated_low_confidence(0.14) benign(0.067) TCGA-L5-A4OM-01 1 160341717 160341717 G A NHLH1 3'UTR 0.21 TCGA-L5-A4OM-01 1 183909716 183909716 C A COLGALT2 Missense_Mutation p.V535L 0.30 tolerated(0.29) benign(0.04) TCGA-L5-A4OM-01 1 186388404 186388404 G A C1orf27 3'UTR 0.40 TCGA-L5-A4OM-01 1 224345198 224345198 G A FBXO28 Missense_Mutation p.R286H 0.07 deleterious(0.05) benign(0.079) TCGA-L5-A4OM-01 1 226252079 226252079 C T H3F3A Silent p.R9R 0.11 TCGA-L5-A4OM-01 1 248005147 248005147 G A OR11L1 Nonsense_Mutation p.Q18* 0.40 TCGA-L5-A4OM-01 1 249107261 249107261 T A SH3BP5L Missense_Mutation p.K213M 0.19 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OM-01 1 9793590 9793590 C T CLSTN1 Missense_Mutation p.A766T 0.06 tolerated(0.23) benign(0.371) TCGA-L5-A4OM-01 20 62594469 62594469 C T ZNF512B Silent p.V649V 0.24 TCGA-L5-A4OM-01 22 18383650 18383650 T C MICAL3 Missense_Mutation p.I269V 0.24 benign(0.158) TCGA-L5-A4OM-01 22 23658925 23658925 G A BCR 3'UTR 0.22 TCGA-L5-A4OM-01 2 133618079 133618079 C T NCKAP5 Missense_Mutation p.D265N 0.05 deleterious(0.01) possibly_damaging(0.907) TCGA-L5-A4OM-01 2 160664960 160664960 C G LY75-CD302 Missense_Mutation p.D1608H 0.30 deleterious(0.01) benign(0.15) TCGA-L5-A4OM-01 2 166153528 166153528 C A SCN2A Missense_Mutation p.T90K 0.44 deleterious(0) possibly_damaging(0.82) TCGA-L5-A4OM-01 2 166847217 166847217 G T SCN1A 3'UTR 0.24 TCGA-L5-A4OM-01 2 174940204 174940204 C T OLA1 Missense_Mutation p.D381N 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OM-01 2 179593015 179593015 A G TTN Silent p.A6512A 0.55 TCGA-L5-A4OM-01 2 204306703 204306703 G T RAPH1 Intron 0.45 TCGA-L5-A4OM-01 2 204306704 204306704 C T RAPH1 Intron 0.45 TCGA-L5-A4OM-01 2 219894879 219894879 G T CCDC108 Missense_Mutation p.Q405K 0.16 tolerated(0.18) benign(0.138) TCGA-L5-A4OM-01 2 32735596 32735596 T C BIRC6 Missense_Mutation p.L3414S 0.08 benign(0.35) TCGA-L5-A4OM-01 2 46989846 46989846 G A SOCS5 3'UTR 0.10 TCGA-L5-A4OM-01 2 85529698 85529698 C A TCF7L1 Missense_Mutation p.S206Y 0.39 deleterious(0) probably_damaging(0.914) TCGA-L5-A4OM-01 2 96919649 96919649 T C TMEM127 Missense_Mutation p.E205G 0.31 deleterious(0.01) benign(0.16) TCGA-L5-A4OM-01 3 114099155 114099155 C T ZBTB20 Silent p.L36L 0.08 TCGA-L5-A4OM-01 3 124653576 124653576 T C MUC13 5'UTR 0.09 TCGA-L5-A4OM-01 3 128060142 128060142 C T EEFSEC Missense_Mutation p.R285W 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A4OM-01 3 195513156 195513156 G A MUC4 Silent p.D1765D 0.09 TCGA-L5-A4OM-01 3 44489304 44489304 G A ZNF445 Missense_Mutation p.T620I 0.14 deleterious(0) benign(0.001) TCGA-L5-A4OM-01 3 45557698 45557698 G A LARS2 Silent p.G658G 0.49 TCGA-L5-A4OM-01 3 52724786 52724786 A - GNL3 Intron 0.41 TCGA-L5-A4OM-01 4 100128630 100128630 G A ADH6 Missense_Mutation p.R313C 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OM-01 4 107037369 107037369 T C TBCK Missense_Mutation p.N801S 0.34 tolerated(0.77) benign(0.004) TCGA-L5-A4OM-01 4 119554298 119554298 A G RP11-384K6.6 RNA 0.56 TCGA-L5-A4OM-01 4 141321590 141321590 G A CLGN Silent p.F205F 0.33 TCGA-L5-A4OM-01 4 3133112 3133112 G A HTT Missense_Mutation p.G696R 0.14 possibly_damaging(0.883) TCGA-L5-A4OM-01 4 47594268 47594268 A T ATP10D 3'UTR 0.53 TCGA-L5-A4OM-01 5 114860452 114860452 T C FEM1C Missense_Mutation p.I469M 0.64 deleterious(0.03) possibly_damaging(0.885) TCGA-L5-A4OM-01 5 149772327 149772327 G A TCOF1 Missense_Mutation p.E1192K 0.21 deleterious(0) probably_damaging(0.911) TCGA-L5-A4OM-01 5 33458676 33458676 A T TARS Missense_Mutation p.Q363H 0.17 deleterious(0) benign(0.249) TCGA-L5-A4OM-01 5 58571194 58571194 G T PDE4D Intron 0.22 TCGA-L5-A4OM-01 5 801230 801230 C G ZDHHC11 Missense_Mutation p.E411Q 0.03 tolerated_low_confidence(0.56) benign(0.403) TCGA-L5-A4OM-01 6 106649888 106649888 T A ATG5 Missense_Mutation p.D217V 0.35 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OM-01 6 26032136 26032136 C G HIST1H3B Missense_Mutation p.E51D 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.858) TCGA-L5-A4OM-01 6 46684165 46684165 A G PLA2G7 Missense_Mutation p.L111P 0.19 deleterious(0) probably_damaging(0.99) TCGA-L5-A4OM-01 6 96661992 96661992 C A FUT9 3'UTR 0.50 TCGA-L5-A4OM-01 7 72417074 72417074 C T POM121 Intron 0.10 TCGA-L5-A4OM-01 7 87536898 87536898 A G DBF4 Missense_Mutation p.Y482C 0.18 tolerated(0.31) benign(0) TCGA-L5-A4OM-01 8 121384017 121384017 A G COL14A1 3'UTR 0.47 TCGA-L5-A4OM-01 9 134525617 134525617 T C RAPGEF1 Missense_Mutation p.R73G 0.29 tolerated_low_confidence(0.07) benign(0.185) TCGA-L5-A4OM-01 9 2829813 2829813 C A KIAA0020 Silent p.L271L 0.09 TCGA-L5-A4OM-01 9 2829936 2829936 C T KIAA0020 Silent p.Q230Q 0.05 TCGA-L5-A4OM-01 9 2834111 2834111 C T KIAA0020 Silent p.L120L 0.18 TCGA-L5-A4OM-01 9 2837324 2837324 C T KIAA0020 Missense_Mutation p.E54K 0.23 tolerated(0.5) benign(0.016) TCGA-L5-A4OM-01 9 8521445 8521445 G T PTPRD Missense_Mutation p.P265T 0.79 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OM-01 X 118219376 118219376 G T KIAA1210 Silent p.A1606A 0.37 TCGA-L5-A4OM-01 X 120181834 120181834 G A GLUD2 Missense_Mutation p.R99Q 0.21 tolerated(0.22) benign(0.006) TCGA-L5-A4OM-01 X 125955211 125955211 C A CXorf64 Missense_Mutation p.P197H 0.36 deleterious(0.01) possibly_damaging(0.746) TCGA-L5-A4OM-01 X 153276107 153276107 C T IRAK1 3'UTR 0.19 TCGA-L5-A4OM-01 X 49859648 49859648 G A CLCN5 3'UTR 0.10 TCGA-L5-A4OM-01 X 68382750 68382750 C A PJA1 Missense_Mutation p.R111I 0.36 deleterious(0) possibly_damaging(0.885) TCGA-L5-A4ON-01 10 11367844 11367844 T G CELF2 Missense_Mutation p.F447C 0.41 deleterious(0) possibly_damaging(0.628) TCGA-L5-A4ON-01 10 125526577 125526577 C A CPXM2 Missense_Mutation p.W464L 0.37 deleterious(0) probably_damaging(1) TCGA-L5-A4ON-01 10 15649773 15649773 G A ITGA8 Missense_Mutation p.T556M 0.33 deleterious(0) probably_damaging(0.975) TCGA-L5-A4ON-01 10 30316554 30316554 C T KIAA1462 Silent p.E841E 0.26 TCGA-L5-A4ON-01 10 33189896 33189896 T G ITGB1 3'UTR 0.31 TCGA-L5-A4ON-01 10 60556253 60556253 T G BICC1 Missense_Mutation p.L445V 0.24 tolerated(0.06) probably_damaging(0.984) TCGA-L5-A4ON-01 10 72298759 72298759 G A PALD1 Missense_Mutation p.A522T 0.38 tolerated(0.28) benign(0.008) TCGA-L5-A4ON-01 10 87628820 87628820 G A GRID1 Missense_Mutation p.R300C 0.36 deleterious(0) probably_damaging(0.93) TCGA-L5-A4ON-01 11 102642785 102642785 G T MMP10 Missense_Mutation p.P430T 0.30 deleterious(0) probably_damaging(0.992) TCGA-L5-A4ON-01 11 114550457 114550457 T C NXPE2 Silent p.I35I 0.78 TCGA-L5-A4ON-01 11 120916423 120916423 T G TBCEL Missense_Mutation p.S8R 0.82 deleterious(0) possibly_damaging(0.587) TCGA-L5-A4ON-01 11 132205042 132205042 G A NTM 3'UTR 0.31 TCGA-L5-A4ON-01 11 17615272 17615272 C T OTOG Missense_Mutation p.T1098I 0.21 probably_damaging(0.999) TCGA-L5-A4ON-01 11 30034788 30034788 A C KCNA4 5'UTR 0.67 TCGA-L5-A4ON-01 11 46911918 46911918 C T LRP4 Missense_Mutation p.G609R 0.28 tolerated(0.19) benign(0.007) TCGA-L5-A4ON-01 11 5068582 5068582 T G OR52J3 Missense_Mutation p.L276R 0.76 deleterious(0) probably_damaging(0.982) TCGA-L5-A4ON-01 11 5080572 5080572 A C OR52E2 Missense_Mutation p.F96V 0.80 deleterious(0) probably_damaging(0.914) TCGA-L5-A4ON-01 11 5905821 5905821 T G OR52E4 Missense_Mutation p.L100R 0.56 deleterious(0) probably_damaging(0.999) TCGA-L5-A4ON-01 11 65396307 65396307 G C PCNXL3 Missense_Mutation p.V1277L 0.17 tolerated(0.3) benign(0.084) TCGA-L5-A4ON-01 11 65546613 65546613 G A AP5B1 Missense_Mutation p.R451W 0.43 deleterious(0.02) probably_damaging(0.923) TCGA-L5-A4ON-01 11 68773591 68773591 C T MRGPRF Missense_Mutation p.G63R 0.44 deleterious(0) probably_damaging(0.952) TCGA-L5-A4ON-01 11 6942312 6942312 A C OR2D3 Missense_Mutation p.K27T 0.65 deleterious(0) benign(0.01) TCGA-L5-A4ON-01 11 83167455 83167455 T C DLG2 3'Flank 0.65 TCGA-L5-A4ON-01 11 83169055 83169055 A C DLG2 3'UTR 0.80 TCGA-L5-A4ON-01 11 89421812 89421812 T G FOLH1B RNA 0.59 TCGA-L5-A4ON-01 12 104382100 104382100 C T TDG 3'UTR 0.17 TCGA-L5-A4ON-01 12 110973792 110973792 G A PPTC7 3'UTR 0.93 TCGA-L5-A4ON-01 12 119866563 119866563 A C CCDC60 Missense_Mutation p.S56R 0.76 deleterious(0) probably_damaging(0.999) TCGA-L5-A4ON-01 12 14836151 14836151 T G GUCY2C Missense_Mutation p.S146R 0.67 deleterious(0) probably_damaging(0.999) TCGA-L5-A4ON-01 12 21953833 21953833 A T ABCC9 3'UTR 0.60 TCGA-L5-A4ON-01 12 24736553 24736553 T C LINC00477 RNA 0.29 TCGA-L5-A4ON-01 12 75669817 75669817 A C CAPS2 3'UTR 0.67 TCGA-L5-A4ON-01 12 75893716 75893716 T A KRR1 Missense_Mutation p.K340I 0.31 deleterious(0.04) probably_damaging(0.938) TCGA-L5-A4ON-01 13 23909652 23909652 A C SACS Missense_Mutation p.V2788G 0.34 probably_damaging(0.993) TCGA-L5-A4ON-01 13 39262874 39262874 C T FREM2 Missense_Mutation p.P465S 0.31 tolerated(0.86) benign(0.001) TCGA-L5-A4ON-01 13 39262883 39262883 T C FREM2 Silent p.L468L 0.29 TCGA-L5-A4ON-01 13 58207948 58207948 C T PCDH17 Missense_Mutation p.T423M 0.24 deleterious(0) probably_damaging(1) TCGA-L5-A4ON-01 13 58209240 58209240 A C PCDH17 Missense_Mutation p.I854L 0.29 tolerated(0.78) benign(0.073) TCGA-L5-A4ON-01 14 20502358 20502358 A G OR4K13 Missense_Mutation p.L187P 0.63 deleterious(0) probably_damaging(0.998) TCGA-L5-A4ON-01 14 47310149 47310149 T G MDGA2 3'UTR 0.35 TCGA-L5-A4ON-01 14 94844884 94844885 - G SERPINA1 Frame_Shift_Ins p.E387Rfs*14 0.49 TCGA-L5-A4ON-01 15 20170137 20170137 T C IGHV1OR15-9 Silent p.G45G 0.30 TCGA-L5-A4ON-01 15 25425543 25425543 A C SNORD115-6 5'Flank 0.33 TCGA-L5-A4ON-01 15 32716844 32716844 A G U8 3'Flank 0.29 TCGA-L5-A4ON-01 15 66857761 66857761 G A LCTL 5'UTR 0.82 TCGA-L5-A4ON-01 15 76031393 76031393 C A AC019294.1 3'UTR 0.76 TCGA-L5-A4ON-01 15 76958128 76958128 C T SCAPER Silent p.E837E 0.41 TCGA-L5-A4ON-01 15 86807505 86807505 T G AGBL1 Missense_Mutation p.L322R 0.70 tolerated(0.36) benign(0.095) TCGA-L5-A4ON-01 16 1129924 1129924 C T SSTR5 Silent p.R352R 0.45 TCGA-L5-A4ON-01 16 1306632 1306632 C T TPSD1 Silent p.C66C 0.43 TCGA-L5-A4ON-01 16 13297270 13297270 C T SHISA9 Silent p.N237N 0.10 TCGA-L5-A4ON-01 16 31155123 31155123 G A PRSS36 Silent p.G252G 0.25 TCGA-L5-A4ON-01 16 3350227 3350227 G A TIGD7 Nonsense_Mutation p.R130* 0.11 TCGA-L5-A4ON-01 16 53737963 53737963 T G FTO 5'UTR 0.42 TCGA-L5-A4ON-01 16 69368468 69368468 G A RP11-343C2.12 Silent p.L103L 0.14 TCGA-L5-A4ON-01 16 71196439 71196439 A C HYDIN Silent p.T237T 0.37 TCGA-L5-A4ON-01 16 78011934 78011934 A C VAT1L 3'UTR 0.37 TCGA-L5-A4ON-01 16 78013248 78013248 T G VAT1L 3'UTR 0.50 TCGA-L5-A4ON-01 16 88786650 88786650 G A PIEZO1 Silent p.D1997D 0.14 TCGA-L5-A4ON-01 16 88801445 88801445 C G PIEZO1 Missense_Mutation p.Q562H 0.13 tolerated(0.18) benign(0.002) TCGA-L5-A4ON-01 16 89811415 89811415 A C FANCA Missense_Mutation p.L1193R 0.29 deleterious(0) possibly_damaging(0.766) TCGA-L5-A4ON-01 17 2595726 2595726 C T CLUH Silent p.L1124L 0.09 TCGA-L5-A4ON-01 17 34324726 34324727 - A CCL15 3'UTR 0.16 TCGA-L5-A4ON-01 17 7224948 7224948 G T NEURL4 Silent p.S1010S 0.22 TCGA-L5-A4ON-01 17 74714686 74714686 G A JMJD6 Intron 0.14 TCGA-L5-A4ON-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.72 deleterious(0) probably_damaging(0.998) TCGA-L5-A4ON-01 18 5394763 5394763 T C EPB41L3 Silent p.K1061K 0.64 TCGA-L5-A4ON-01 18 7050932 7050932 A G LAMA1 Missense_Mutation p.F117L 0.50 deleterious(0) probably_damaging(0.996) TCGA-L5-A4ON-01 18 73122427 73122427 T G SMIM21 3'UTR 0.26 TCGA-L5-A4ON-01 18 7567751 7567751 G A PTPRM 5'UTR 0.50 TCGA-L5-A4ON-01 19 16060211 16060211 C T OR10H4 Missense_Mutation p.R132C 0.33 deleterious(0.04) benign(0.008) TCGA-L5-A4ON-01 19 1828022 1828022 C T REXO1 Missense_Mutation p.A256T 0.50 tolerated(0.77) benign(0) TCGA-L5-A4ON-01 19 21990665 21990665 T G ZNF43 Missense_Mutation p.K725T 0.22 deleterious(0.04) possibly_damaging(0.893) TCGA-L5-A4ON-01 19 23329561 23329561 T C ZNF730 3'UTR 0.15 TCGA-L5-A4ON-01 19 36831221 36831221 T C ZFP14 Missense_Mutation p.T503A 0.38 deleterious(0.02) probably_damaging(0.943) TCGA-L5-A4ON-01 19 37383030 37383030 A T ZNF829 Missense_Mutation p.F302L 0.40 deleterious(0.01) probably_damaging(0.946) TCGA-L5-A4ON-01 19 40885420 40885420 G T HIPK4 3'UTR 0.71 TCGA-L5-A4ON-01 19 43237052 43237052 T G PSG3 Missense_Mutation p.N198T 0.39 tolerated(0.63) benign(0.006) TCGA-L5-A4ON-01 19 43430787 43430787 G - PSG7 Frame_Shift_Del p.P264Lfs*? 0.48 TCGA-L5-A4ON-01 19 49132801 49132801 C T SPHK2 Missense_Mutation p.A579V 0.42 deleterious(0.04) benign(0.03) TCGA-L5-A4ON-01 19 5455945 5455945 C T ZNRF4 Missense_Mutation p.P148L 0.42 deleterious(0) probably_damaging(0.986) TCGA-L5-A4ON-01 19 56981328 56981328 C G ZNF667 Intron 0.80 TCGA-L5-A4ON-01 19 9070131 9070131 A C MUC16 Missense_Mutation p.I5772S 0.35 unknown(0) TCGA-L5-A4ON-01 1 120464920 120464920 G A NOTCH2 Missense_Mutation p.R1718C 0.19 deleterious(0.01) possibly_damaging(0.719) TCGA-L5-A4ON-01 1 142803343 142803343 T C RP11-423O2.5 RNA 0.12 TCGA-L5-A4ON-01 1 149857793 149857793 C G HIST2H2BE 3'UTR 0.10 TCGA-L5-A4ON-01 1 152191005 152191005 A T HRNR Missense_Mutation p.S1034T 0.36 unknown(0) TCGA-L5-A4ON-01 1 154543681 154543681 G A CHRNB2 Missense_Mutation p.E128K 0.11 deleterious(0.01) probably_damaging(0.977) TCGA-L5-A4ON-01 1 156722139 156722139 C A HDGF Missense_Mutation p.G6V 0.27 deleterious_low_confidence(0.01) benign(0.032) TCGA-L5-A4ON-01 1 157737295 157737295 T C FCRL2 Silent p.P296P 0.42 TCGA-L5-A4ON-01 1 157771711 157771711 A G FCRL1 Missense_Mutation p.F294L 0.31 tolerated(0.13) benign(0.004) TCGA-L5-A4ON-01 1 158637764 158637764 T C SPTA1 Missense_Mutation p.Q641R 0.50 tolerated(0.34) benign(0.155) TCGA-L5-A4ON-01 1 158654936 158654936 A C SPTA1 Missense_Mutation p.L76V 0.45 tolerated(0.12) benign(0.001) TCGA-L5-A4ON-01 1 159021683 159021683 A C IFI16 Missense_Mutation p.K571T 0.24 deleterious(0) possibly_damaging(0.69) TCGA-L5-A4ON-01 1 161953713 161953713 G A OLFML2B Missense_Mutation p.R669W 0.47 deleterious(0) probably_damaging(1) TCGA-L5-A4ON-01 1 171289011 171289011 C G FMO4 Missense_Mutation p.S16C 0.46 tolerated(0.19) benign(0.06) TCGA-L5-A4ON-01 1 17707635 17707635 A C PADI6 RNA 0.11 TCGA-L5-A4ON-01 1 177905467 177905467 G A SEC16B Missense_Mutation p.P846L 0.18 tolerated(0.69) benign(0.035) TCGA-L5-A4ON-01 1 180962536 180962536 G A STX6 Missense_Mutation p.S109L 0.08 deleterious(0.01) benign(0.046) TCGA-L5-A4ON-01 1 196250003 196250003 A C KCNT2 Missense_Mutation p.L966R 0.39 tolerated(0.13) probably_damaging(0.972) TCGA-L5-A4ON-01 1 197008501 197008501 T C F13B 3'UTR 0.31 TCGA-L5-A4ON-01 1 201618309 201618309 G T NAV1 Silent p.P171P 0.48 TCGA-L5-A4ON-01 1 229773188 229773188 C T URB2 Missense_Mutation p.T943M 0.29 tolerated(0.12) benign(0) TCGA-L5-A4ON-01 1 23420814 23420814 A C LUZP1 5'UTR 0.12 TCGA-L5-A4ON-01 1 2433603 2433603 G A PLCH2 Missense_Mutation p.G878D 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.837) TCGA-L5-A4ON-01 1 247464406 247464406 G A ZNF496 Silent p.T393T 0.42 TCGA-L5-A4ON-01 1 248202353 248202353 A G OR2L2 Missense_Mutation p.R262G 0.43 tolerated(0.07) benign(0.073) TCGA-L5-A4ON-01 1 38047869 38047869 C T GNL2 Silent p.P288P 0.41 TCGA-L5-A4ON-01 1 66098953 66098954 - A LEPR Intron 0.47 TCGA-L5-A4ON-01 20 13856704 13856704 A C SEL1L2 Missense_Mutation p.F362V 0.44 deleterious(0) possibly_damaging(0.872) TCGA-L5-A4ON-01 20 2375225 2375225 C T TGM6 Silent p.S45S 0.40 TCGA-L5-A4ON-01 20 31019408 31019408 G T ASXL1 Missense_Mutation p.R302L 0.45 deleterious(0) probably_damaging(0.999) TCGA-L5-A4ON-01 20 330345 330345 G A NRSN2 Missense_Mutation p.G20S 0.38 tolerated(0.23) benign(0.145) TCGA-L5-A4ON-01 20 42744353 42744353 C T JPH2 Silent p.A654A 0.16 TCGA-L5-A4ON-01 20 49226215 49226215 G A FAM65C Silent p.R153R 0.24 TCGA-L5-A4ON-01 20 57766158 57766158 T C ZNF831 Silent p.G28G 0.09 TCGA-L5-A4ON-01 20 60885984 60885984 G A LAMA5 Missense_Mutation p.R3419C 0.73 probably_damaging(0.964) TCGA-L5-A4ON-01 21 22664538 22664538 G A NCAM2 Missense_Mutation p.R199H 0.27 deleterious(0.01) possibly_damaging(0.877) TCGA-L5-A4ON-01 21 31986100 31986100 A G KRTAP6-1 Missense_Mutation p.F42L 0.42 unknown(0) TCGA-L5-A4ON-01 21 32537342 32537342 G A TIAM1 Silent p.T976T 0.23 TCGA-L5-A4ON-01 22 19902752 19902752 C T TXNRD2 Silent p.P192P 0.50 TCGA-L5-A4ON-01 22 42093878 42093878 C A C22orf46 3'UTR 0.20 TCGA-L5-A4ON-01 2 124979370 124979370 A C CNTNAP5 Missense_Mutation p.Q57H 0.26 deleterious(0.02) benign(0.038) TCGA-L5-A4ON-01 2 141459345 141459345 G A LRP1B Silent p.T2124T 0.23 TCGA-L5-A4ON-01 2 166868761 166868761 T G SCN1A Missense_Mutation p.K1246T 0.35 deleterious(0) benign(0.212) TCGA-L5-A4ON-01 2 179701269 179701269 A C CCDC141 Intron 0.27 TCGA-L5-A4ON-01 2 189599288 189599288 A G DIRC1 3'UTR 0.43 TCGA-L5-A4ON-01 2 203071475 203071475 G A SUMO1 3'UTR 0.35 TCGA-L5-A4ON-01 2 203745605 203745605 G A WDR12 Missense_Mutation p.T417I 0.39 deleterious(0.03) benign(0.075) TCGA-L5-A4ON-01 2 215917224 215917224 A C ABCA12 Missense_Mutation p.L165R 0.42 tolerated(0.06) possibly_damaging(0.747) TCGA-L5-A4ON-01 2 219128374 219128374 C T GPBAR1 Silent p.D309D 0.27 TCGA-L5-A4ON-01 2 26950852 26950852 G A KCNK3 Missense_Mutation p.G201S 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A4ON-01 2 29247111 29247111 G A FAM179A Missense_Mutation p.R575H 0.32 deleterious(0) probably_damaging(0.977) TCGA-L5-A4ON-01 2 29451843 29451843 G T ALK Missense_Mutation p.Q908K 0.21 tolerated(0.27) probably_damaging(0.976) TCGA-L5-A4ON-01 2 32361662 32361662 C G SPAST Missense_Mutation p.L426V 0.09 deleterious(0) probably_damaging(0.966) TCGA-L5-A4ON-01 2 56613262 56613262 A T CCDC85A 3'UTR 0.29 TCGA-L5-A4ON-01 2 67630536 67630536 A G ETAA1 Missense_Mutation p.H241R 0.25 tolerated(0.37) benign(0.333) TCGA-L5-A4ON-01 2 73143814 73143814 T A EMX1 5'Flank 0.16 TCGA-L5-A4ON-01 2 79386613 79386613 T A REG3A 5'UTR 0.64 TCGA-L5-A4ON-01 3 101010330 101010330 C A IMPG2 Missense_Mutation p.V176L 0.27 tolerated(0.22) benign(0.002) TCGA-L5-A4ON-01 3 10400482 10400482 G A ATP2B2 Missense_Mutation p.R677C 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A4ON-01 3 129288771 129288771 G A PLXND1 Silent p.I1260I 0.26 TCGA-L5-A4ON-01 3 130159234 130159234 A C COL6A5 Missense_Mutation p.S2018R 0.38 tolerated(0.53) benign(0.007) TCGA-L5-A4ON-01 3 130380752 130380752 T G COL6A6 Missense_Mutation p.N2034K 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A4ON-01 3 136221515 136221515 C T STAG1 Silent p.K261K 0.52 TCGA-L5-A4ON-01 3 140406766 140406766 T C TRIM42 Silent p.Y414Y 0.23 TCGA-L5-A4ON-01 3 145787607 145787607 A C PLOD2 3'UTR 0.71 TCGA-L5-A4ON-01 3 147106563 147106563 C T ZIC4 3'UTR 0.65 TCGA-L5-A4ON-01 3 151095844 151095844 C T MED12L Missense_Mutation p.A1419V 0.09 deleterious(0) probably_damaging(0.931) TCGA-L5-A4ON-01 3 164724661 164724661 A C SI Missense_Mutation p.V1450G 0.25 deleterious(0) probably_damaging(0.989) TCGA-L5-A4ON-01 3 167039988 167039988 T A ZBBX Missense_Mutation p.K300N 0.47 deleterious(0) probably_damaging(0.94) TCGA-L5-A4ON-01 3 173996812 173996812 G T NLGN1 Nonsense_Mutation p.E341* 0.45 TCGA-L5-A4ON-01 3 183901682 183901683 - GG AP2M1 3'UTR 0.11 TCGA-L5-A4ON-01 3 32931919 32931919 T C TRIM71 Missense_Mutation p.L408P 0.06 deleterious(0.02) probably_damaging(0.979) TCGA-L5-A4ON-01 3 47044771 47044771 G A NBEAL2 Missense_Mutation p.E1898K 0.36 deleterious(0) possibly_damaging(0.812) TCGA-L5-A4ON-01 3 48731702 48731702 G - IP6K2 Intron 0.28 TCGA-L5-A4ON-01 3 55544128 55544128 T G ERC2 3'UTR 0.42 TCGA-L5-A4ON-01 3 64601798 64601798 A C ADAMTS9 Silent p.G954G 0.56 TCGA-L5-A4ON-01 3 78646992 78646992 A C ROBO1 3'UTR 0.43 TCGA-L5-A4ON-01 3 86116183 86116183 T A CADM2 3'Flank 0.44 TCGA-L5-A4ON-01 3 97983517 97983517 T C OR5H6 Missense_Mutation p.L130P 0.16 deleterious(0) probably_damaging(0.954) TCGA-L5-A4ON-01 4 100789431 100789431 C T DAPP1 3'UTR 0.43 TCGA-L5-A4ON-01 4 115997687 115997687 T C NDST4 Missense_Mutation p.E169G 0.54 deleterious(0) benign(0.331) TCGA-L5-A4ON-01 4 140297560 140297560 G A NAA15 Silent p.P663P 0.37 TCGA-L5-A4ON-01 4 141471684 141471684 T C ELMOD2 3'UTR 0.29 TCGA-L5-A4ON-01 4 142053867 142053867 G A RNF150 Silent p.T32T 0.38 TCGA-L5-A4ON-01 4 147561598 147561598 G A POU4F2 Missense_Mutation p.G290S 0.39 deleterious(0) probably_damaging(0.997) TCGA-L5-A4ON-01 4 157683624 157683624 T C PDGFC 3'UTR 0.54 TCGA-L5-A4ON-01 4 166795097 166795097 T C TLL1 Missense_Mutation p.L14P 0.27 deleterious_low_confidence(0) benign(0.007) TCGA-L5-A4ON-01 4 177094487 177094487 G T WDR17 Missense_Mutation p.R1144L 0.45 tolerated(0.1) benign(0.153) TCGA-L5-A4ON-01 4 186066045 186066045 G A SLC25A4 Missense_Mutation p.R80H 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-L5-A4ON-01 4 186532968 186532968 G A SORBS2 Missense_Mutation p.S1117F 0.59 deleterious(0) benign(0.316) TCGA-L5-A4ON-01 4 40792670 40792670 G A NSUN7 Missense_Mutation p.R363K 0.15 tolerated(0.08) benign(0.246) TCGA-L5-A4ON-01 4 42080286 42080286 G T SLC30A9 Nonsense_Mutation p.E536* 0.23 TCGA-L5-A4ON-01 4 42509113 42509113 T G ATP8A1 Missense_Mutation p.E669A 0.13 deleterious(0) probably_damaging(0.995) TCGA-L5-A4ON-01 4 5469797 5469797 A C STK32B Missense_Mutation p.K369T 0.14 deleterious(0.02) possibly_damaging(0.656) TCGA-L5-A4ON-01 4 5969167 5969167 T G C4orf50 Missense_Mutation p.K618T 0.88 tolerated(0.3) benign(0.33) TCGA-L5-A4ON-01 4 68928467 68928467 A C TMPRSS11F Intron 0.23 TCGA-L5-A4ON-01 4 73147079 73147079 A C ADAMTS3 3'UTR 0.21 TCGA-L5-A4ON-01 4 77926840 77926840 G A SEPT11 Missense_Mutation p.G77S 0.59 tolerated(0.83) benign(0.144) TCGA-L5-A4ON-01 4 9783644 9783644 C T DRD5 5'UTR 0.65 TCGA-L5-A4ON-01 5 129015552 129015552 A T ADAMTS19 Nonsense_Mutation p.R862* 0.62 TCGA-L5-A4ON-01 5 130980348 130980348 C T FNIP1 3'UTR 0.33 TCGA-L5-A4ON-01 5 139192922 139192922 C T PSD2 Missense_Mutation p.R134W 0.33 deleterious(0) probably_damaging(0.996) TCGA-L5-A4ON-01 5 140188585 140188585 G A PCDHA4 Missense_Mutation p.A605T 0.72 deleterious_low_confidence(0.02) possibly_damaging(0.615) TCGA-L5-A4ON-01 5 140257124 140257124 C T PCDHA12 Silent p.P689P 0.39 TCGA-L5-A4ON-01 5 156929953 156929953 C G ADAM19 Missense_Mutation p.R389T 0.05 deleterious(0.01) benign(0.444) TCGA-L5-A4ON-01 5 15936744 15936744 G A FBXL7 Missense_Mutation p.V309I 0.80 tolerated(0.68) benign(0) TCGA-L5-A4ON-01 5 63256592 63256592 C T HTR1A Missense_Mutation p.A319T 0.35 tolerated(0.45) benign(0.001) TCGA-L5-A4ON-01 5 77477450 77477450 C T AP3B1 Missense_Mutation p.E275K 0.72 tolerated(0.26) benign(0.19) TCGA-L5-A4ON-01 6 118636018 118636018 C T SLC35F1 3'UTR 0.13 TCGA-L5-A4ON-01 6 137815138 137815138 G A OLIG3 Missense_Mutation p.S57L 0.40 tolerated(0.18) benign(0.013) TCGA-L5-A4ON-01 6 138576830 138576830 T C KIAA1244 Missense_Mutation p.L343P 0.17 deleterious(0) probably_damaging(0.999) TCGA-L5-A4ON-01 6 155764536 155764536 C T NOX3 Silent p.A119A 0.10 TCGA-L5-A4ON-01 6 157525061 157525061 G C ARID1B Silent p.T1652T 0.22 TCGA-L5-A4ON-01 6 159646627 159646627 C T FNDC1 Silent p.I315I 0.69 TCGA-L5-A4ON-01 6 163984612 163984612 C T QKI Silent p.N265N 0.19 TCGA-L5-A4ON-01 6 165715455 165715455 A C C6orf118 Missense_Mutation p.V119G 0.36 tolerated(0.4) benign(0.009) TCGA-L5-A4ON-01 6 170190176 170190176 A T LINC00242 RNA 0.15 TCGA-L5-A4ON-01 6 170591500 170591500 C T DLL1 3'UTR 0.16 TCGA-L5-A4ON-01 6 29581140 29581140 G A GABBR1 Silent p.N482N 0.16 TCGA-L5-A4ON-01 6 54095682 54095682 T G MLIP Silent p.S428S 0.40 TCGA-L5-A4ON-01 6 55039341 55039341 G A HCRTR2 5'UTR 0.26 TCGA-L5-A4ON-01 6 66044948 66044948 A G EYS Missense_Mutation p.L564P 0.43 tolerated(0.22) benign(0.202) TCGA-L5-A4ON-01 6 85398374 85398374 A C RP11-132M7.3 5'Flank 0.41 TCGA-L5-A4ON-01 6 93964462 93964462 T G EPHA7 Missense_Mutation p.K812T 0.58 tolerated(0.07) possibly_damaging(0.687) TCGA-L5-A4ON-01 7 100855186 100855186 C T PLOD3 Silent p.L391L 0.72 TCGA-L5-A4ON-01 7 105636791 105636791 G A CDHR3 Missense_Mutation p.R235H 0.74 tolerated(0.33) benign(0.003) TCGA-L5-A4ON-01 7 117864733 117864733 A C ANKRD7 5'UTR 0.82 TCGA-L5-A4ON-01 7 139257834 139257834 C T HIPK2 Missense_Mutation p.V1146M 0.30 deleterious(0.04) probably_damaging(0.997) TCGA-L5-A4ON-01 7 21779255 21779255 G A DNAH11 Silent p.P2633P 0.50 TCGA-L5-A4ON-01 7 4051763 4051763 G A SDK1 Silent p.P772P 0.19 TCGA-L5-A4ON-01 7 63981863 63981863 T C ZNF680 Silent p.R423R 0.21 TCGA-L5-A4ON-01 7 76112341 76112342 - CAC DTX2 In_Frame_Ins p.T264dup 0.50 TCGA-L5-A4ON-01 8 105361511 105361511 A C DCSTAMP Missense_Mutation p.N244T 0.19 deleterious(0.02) possibly_damaging(0.764) TCGA-L5-A4ON-01 8 117859530 117859530 T G RAD21 3'UTR 0.34 TCGA-L5-A4ON-01 8 13357035 13357035 T G DLC1 Missense_Mutation p.K182N 0.35 deleterious_low_confidence(0.05) benign(0.002) TCGA-L5-A4ON-01 8 142367757 142367757 G A GPR20 Silent p.V89V 0.05 TCGA-L5-A4ON-01 8 20107396 20107396 T C LZTS1 Missense_Mutation p.Q543R 0.47 deleterious(0) possibly_damaging(0.567) TCGA-L5-A4ON-01 8 23186066 23186066 G A LOXL2 Nonsense_Mutation p.R327* 0.23 TCGA-L5-A4ON-01 8 25898183 25898183 G A EBF2 Silent p.V119V 0.26 TCGA-L5-A4ON-01 8 32505698 32505698 A G NRG1 Intron 0.41 TCGA-L5-A4ON-01 8 41575652 41575652 G A ANK1 Missense_Mutation p.T426M 0.34 deleterious(0.04) benign(0.286) TCGA-L5-A4ON-01 8 4494898 4494898 C T CSMD1 Missense_Mutation p.D90N 0.34 probably_damaging(0.998) TCGA-L5-A4ON-01 8 48739330 48739330 G C PRKDC Missense_Mutation p.I2889M 0.39 possibly_damaging(0.872) TCGA-L5-A4ON-01 8 85774633 85774633 C A RALYL Silent p.V185V 0.27 TCGA-L5-A4ON-01 8 89068446 89068446 A T MMP16 Missense_Mutation p.I428K 0.24 tolerated(0.57) benign(0.059) TCGA-L5-A4ON-01 8 94822043 94822043 G C TMEM67 Missense_Mutation p.D898H 0.12 deleterious(0) probably_damaging(0.991) TCGA-L5-A4ON-01 9 107367310 107367310 A G OR13C2 Missense_Mutation p.L200P 0.38 tolerated(0.16) probably_damaging(0.959) TCGA-L5-A4ON-01 9 113637739 113637739 A C LPAR1 Missense_Mutation p.L353V 0.31 tolerated(0.33) benign(0.014) TCGA-L5-A4ON-01 9 117063406 117063406 G A COL27A1 Splice_Site p.X1585_splice 0.29 TCGA-L5-A4ON-01 9 117087140 117087140 C T ORM1 Silent p.D133D 0.36 TCGA-L5-A4ON-01 9 120053713 120053713 G A ASTN2 Silent p.H174H 0.22 TCGA-L5-A4ON-01 9 124525826 124525826 G A DAB2IP Missense_Mutation p.G377R 0.42 tolerated(0.39) probably_damaging(0.996) TCGA-L5-A4ON-01 9 131457897 131457897 C T SET 3'UTR 0.23 TCGA-L5-A4ON-01 9 133352306 133352306 G A ASS1 Missense_Mutation p.A216T 0.42 deleterious(0.02) benign(0.082) TCGA-L5-A4ON-01 9 35737850 35737850 A G GBA2 Silent p.A800A 0.21 TCGA-L5-A4ON-01 9 36170618 36170619 - G CCIN Frame_Shift_Ins p.T376Dfs*22 0.19 TCGA-L5-A4ON-01 9 40705717 40705717 T A SPATA31A3 Missense_Mutation p.L1125H 0.61 deleterious(0.03) benign(0.387) TCGA-L5-A4ON-01 9 77370357 77370357 G C TRPM6 Missense_Mutation p.D1606E 0.30 tolerated_low_confidence(0.29) benign(0.066) TCGA-L5-A4ON-01 X 101624588 101624588 C T NXF2B Silent p.T101T 0.42 TCGA-L5-A4ON-01 X 120008881 120008881 G T CT47B1 Missense_Mutation p.A215D 0.86 deleterious(0.02) unknown(0) TCGA-L5-A4ON-01 X 137793725 137793725 G T FGF13 Intron 0.42 TCGA-L5-A4ON-01 X 73960102 73960102 C G KIAA2022 Missense_Mutation p.K1430N 0.17 tolerated(0.41) benign(0.02) TCGA-L5-A4ON-01 X 77528873 77528873 G C CYSLTR1 Missense_Mutation p.A124G 0.20 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OO-01 10 104687242 104687242 C T CNNM2 Intron 0.35 TCGA-L5-A4OO-01 10 128933708 128933709 - C FAM196A 3'UTR 0.27 TCGA-L5-A4OO-01 10 44865741 44865741 C T CXCL12 3'UTR 0.25 TCGA-L5-A4OO-01 10 89514199 89514199 G A ATAD1 3'UTR 0.10 TCGA-L5-A4OO-01 10 95720806 95720806 C T PIPSL RNA 0.20 TCGA-L5-A4OO-01 11 118374955 118374955 T C KMT2A Missense_Mutation p.M2783T 0.42 benign(0.013) TCGA-L5-A4OO-01 11 50003895 50003895 G T OR4C12 Missense_Mutation p.T48N 0.31 tolerated_low_confidence(0.12) benign(0.003) TCGA-L5-A4OO-01 11 57584182 57584182 C G CTNND1 3'UTR 0.10 TCGA-L5-A4OO-01 11 71847017 71847017 A G FOLR3 Missense_Mutation p.M7V 0.07 tolerated(0.31) unknown(0) TCGA-L5-A4OO-01 11 78567195 78567195 G C TENM4 Missense_Mutation p.D428E 0.20 tolerated(0.11) benign(0.002) TCGA-L5-A4OO-01 12 110777494 110777494 C T ATP2A2 Missense_Mutation p.L577F 0.13 tolerated(0.07) benign(0.063) TCGA-L5-A4OO-01 12 3600835 3600835 A T PRMT8 Missense_Mutation p.K15I 0.14 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-L5-A4OO-01 12 4919422 4919422 G A KCNA6 Missense_Mutation p.R72Q 0.27 deleterious(0.02) possibly_damaging(0.593) TCGA-L5-A4OO-01 12 7981378 7981378 T A SLC2A14 Missense_Mutation p.S223C 0.26 tolerated(0.22) benign(0.016) TCGA-L5-A4OO-01 12 96661219 96661219 A G ELK3 3'UTR 0.34 TCGA-L5-A4OO-01 13 20208098 20208098 G - MPHOSPH8 Frame_Shift_Del 0.10 TCGA-L5-A4OO-01 13 25068765 25068765 T A PARP4 Silent p.L229L 0.08 TCGA-L5-A4OO-01 13 37439893 37439893 A C SMAD9 Missense_Mutation p.F262V 0.26 tolerated(0.59) benign(0) TCGA-L5-A4OO-01 13 66877370 66877371 - C PCDH9 3'UTR 0.24 TCGA-L5-A4OO-01 14 106170814 106170814 G C IGHA1 3'Flank 0.16 TCGA-L5-A4OO-01 14 73141063 73141063 C T DPF3 Silent p.P252P 0.17 TCGA-L5-A4OO-01 14 76948947 76948947 A C ESRRB Missense_Mutation p.K211T 0.07 deleterious(0.04) benign(0.069) TCGA-L5-A4OO-01 14 91077133 91077133 C T TTC7B Missense_Mutation p.R640Q 0.32 tolerated(0.43) benign(0.007) TCGA-L5-A4OO-01 15 101718692 101718692 C T CHSY1 Missense_Mutation p.R437H 0.06 tolerated(0.1) probably_damaging(0.973) TCGA-L5-A4OO-01 15 24921975 24921975 G T NPAP1 Missense_Mutation p.A321S 0.38 deleterious(0.02) possibly_damaging(0.6) TCGA-L5-A4OO-01 15 25227118 25227118 A C SNRPN 3'Flank 0.18 TCGA-L5-A4OO-01 15 40864010 40864010 C T RPUSD2 Missense_Mutation p.R272W 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A4OO-01 15 48493984 48493984 A G CTXN2 3'UTR 0.21 TCGA-L5-A4OO-01 15 79585927 79585928 - TGGTC ANKRD34C Frame_Shift_Ins p.S103Wfs*27 0.19 TCGA-L5-A4OO-01 15 81605589 81605589 C T STARD5 3'UTR 0.12 TCGA-L5-A4OO-01 15 85406098 85406098 C T ALPK3 Silent p.P1656P 0.28 TCGA-L5-A4OO-01 15 99796172 99796172 G A LRRC28 Missense_Mutation p.E4K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.691) TCGA-L5-A4OO-01 16 31477487 31477487 G A ARMC5 Silent p.P695P 0.16 TCGA-L5-A4OO-01 16 57685207 57685207 C T GPR56 Silent p.L54L 0.13 TCGA-L5-A4OO-01 16 66423357 66423357 A G CDH5 Missense_Mutation p.D238G 0.14 tolerated(0.1) benign(0.3) TCGA-L5-A4OO-01 16 69776090 69776090 G T NOB1 3'UTR 0.25 TCGA-L5-A4OO-01 16 69988452 69988452 C T CLEC18A Silent p.N144N 0.10 TCGA-L5-A4OO-01 16 74657072 74657072 G A RFWD3 3'UTR 0.25 TCGA-L5-A4OO-01 16 88694106 88694106 G A ZC3H18 Missense_Mutation p.E729K 0.08 deleterious_low_confidence(0.01) probably_damaging(0.948) TCGA-L5-A4OO-01 16 88947727 88947727 G A CBFA2T3 Silent p.S458S 0.24 TCGA-L5-A4OO-01 16 8948463 8948463 G A CARHSP1 3'UTR 0.10 TCGA-L5-A4OO-01 16 89980441 89980441 A G MC1R 5'Flank 0.14 TCGA-L5-A4OO-01 17 28088355 28088355 C A SSH2 Intron 0.23 TCGA-L5-A4OO-01 17 36687428 36687428 C T SRCIN1 3'UTR 0.22 TCGA-L5-A4OO-01 17 38345490 38345512 CTTATGTGACCATACGCAGCCGC - RAPGEFL1 Frame_Shift_Del p.Y121Ffs*25 0.15 TCGA-L5-A4OO-01 17 39723706 39723706 G A KRT9 Missense_Mutation p.S564F 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-L5-A4OO-01 17 40282551 40282551 G A RAB5C Silent p.H23H 0.19 TCGA-L5-A4OO-01 17 46189952 46189952 G A SNX11 Missense_Mutation p.R20H 0.17 tolerated(0.08) probably_damaging(1) TCGA-L5-A4OO-01 17 48050513 48050513 G A DLX4 Silent p.P120P 0.24 TCGA-L5-A4OO-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.38 tolerated(0.11) benign(0.308) TCGA-L5-A4OO-01 18 44087570 44087570 C T LOXHD1 Missense_Mutation p.V764I 0.09 tolerated(0.2) possibly_damaging(0.825) TCGA-L5-A4OO-01 19 10677846 10677846 G T CDKN2D Missense_Mutation p.S130Y 0.21 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OO-01 19 17373543 17373543 C T USHBP1 Missense_Mutation p.E154K 0.38 tolerated(0.23) benign(0.002) TCGA-L5-A4OO-01 19 40710471 40710471 G A MAP3K10 Missense_Mutation p.V315M 0.39 deleterious(0) probably_damaging(0.964) TCGA-L5-A4OO-01 19 43376083 43376083 A G PSG1 Missense_Mutation p.M182T 0.07 deleterious(0) benign(0.438) TCGA-L5-A4OO-01 19 43763024 43763024 T A PSG9 Missense_Mutation p.I325F 0.24 deleterious(0.02) benign(0.002) TCGA-L5-A4OO-01 19 49218580 49218580 C T MAMSTR Missense_Mutation p.A122T 0.16 tolerated(0.18) benign(0.001) TCGA-L5-A4OO-01 19 52729031 52729031 G A PPP2R1A Missense_Mutation p.V575I 0.26 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OO-01 19 53747130 53747130 A G ZNF677 Silent p.D12D 0.20 TCGA-L5-A4OO-01 1 1114645 1114645 G A TTLL10 Missense_Mutation p.R17Q 0.17 tolerated_low_confidence(0.12) benign(0.255) TCGA-L5-A4OO-01 1 144881481 144881481 C T PDE4DIP Missense_Mutation p.A1239T 0.08 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OO-01 1 152284093 152284093 C T FLG Missense_Mutation p.G1090E 0.20 benign(0.168) TCGA-L5-A4OO-01 1 152884038 152884038 G A IVL 3'UTR 0.23 TCGA-L5-A4OO-01 1 158627319 158627319 T G SPTA1 Missense_Mutation p.K918T 0.14 deleterious(0) probably_damaging(0.954) TCGA-L5-A4OO-01 1 1688112 1688112 C T NADK Intron 0.11 TCGA-L5-A4OO-01 1 169670756 169670756 A G SELL Silent p.V355V 0.12 TCGA-L5-A4OO-01 1 181453096 181453096 C T CACNA1E Silent p.F72F 0.22 TCGA-L5-A4OO-01 1 185143719 185143719 G A SWT1 Missense_Mutation p.G147E 0.09 tolerated(0.6) benign(0.003) TCGA-L5-A4OO-01 1 187610544 187610544 C T ERVMER61-1 RNA 0.09 TCGA-L5-A4OO-01 1 209768386 209768386 C T CAMK1G Missense_Mutation p.R20W 0.20 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OO-01 1 212799905 212799905 C T FAM71A Silent p.N562N 0.13 TCGA-L5-A4OO-01 1 229440935 229440935 C G SPHAR Missense_Mutation p.C18W 0.18 deleterious_low_confidence(0) possibly_damaging(0.827) TCGA-L5-A4OO-01 1 237777617 237777617 C T RYR2 Missense_Mutation p.T1730M 0.22 probably_damaging(0.98) TCGA-L5-A4OO-01 1 248487210 248487210 C T OR2M7 Missense_Mutation p.V221I 0.29 tolerated(1) possibly_damaging(0.536) TCGA-L5-A4OO-01 1 35496350 35496350 A G ZMYM6 Intron 0.19 TCGA-L5-A4OO-01 1 45553566 45553566 G A ZSWIM5 Silent p.I313I 0.22 TCGA-L5-A4OO-01 1 70385455 70385455 C T LRRC7 Intron 0.09 TCGA-L5-A4OO-01 20 22563091 22563091 G A FOXA2 Silent p.C263C 0.18 TCGA-L5-A4OO-01 20 31434572 31434572 C T MAPRE1 Missense_Mutation p.T249I 0.20 deleterious(0) probably_damaging(0.948) TCGA-L5-A4OO-01 20 40125884 40125884 T C CHD6 Intron 0.20 TCGA-L5-A4OO-01 20 56728619 56728619 G T C20orf85 Nonsense_Mutation p.E30* 0.25 TCGA-L5-A4OO-01 21 31768834 31768834 G A KRTAP13-1 Missense_Mutation p.V144I 0.15 deleterious(0) benign(0.003) TCGA-L5-A4OO-01 21 43221756 43221756 C T PRDM15 Missense_Mutation p.V1390M 0.16 deleterious_low_confidence(0.03) probably_damaging(0.983) TCGA-L5-A4OO-01 22 19005960 19005960 C T DGCR9 RNA 0.25 TCGA-L5-A4OO-01 22 20229382 20229382 G A RTN4R Missense_Mutation p.T425I 0.33 tolerated(0.95) benign(0.118) TCGA-L5-A4OO-01 22 21539182 21539182 G A FAM230B RNA 0.11 TCGA-L5-A4OO-01 22 36134903 36134903 T C RBFOX2 3'UTR 0.25 TCGA-L5-A4OO-01 22 36685336 36685336 G A MYH9 Missense_Mutation p.A1451V 0.21 probably_damaging(0.947) TCGA-L5-A4OO-01 22 45821833 45821833 C T RIBC2 Silent p.I222I 0.29 TCGA-L5-A4OO-01 2 101650137 101650137 C T TBC1D8 Missense_Mutation p.E548K 0.26 deleterious(0) possibly_damaging(0.844) TCGA-L5-A4OO-01 2 157426715 157426715 A G GPD2 Silent p.P531P 0.14 TCGA-L5-A4OO-01 2 165353533 165353533 T C GRB14 Missense_Mutation p.Q456R 0.21 deleterious(0) possibly_damaging(0.84) TCGA-L5-A4OO-01 2 170044680 170044680 C T LRP2 Missense_Mutation p.R3043H 0.19 possibly_damaging(0.87) TCGA-L5-A4OO-01 2 179238675 179238675 G A OSBPL6 Missense_Mutation p.R510H 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A4OO-01 2 179641336 179641336 C T TTN Missense_Mutation p.R1752H 0.27 TCGA-L5-A4OO-01 2 182339903 182339904 - A ITGA4 Frame_Shift_Ins p.N150Kfs*8 0.14 TCGA-L5-A4OO-01 2 198436671 198436671 G C RFTN2 3'UTR 0.21 TCGA-L5-A4OO-01 2 212530156 212530156 T C ERBB4 Missense_Mutation p.N588S 0.19 tolerated(0.35) benign(0.014) TCGA-L5-A4OO-01 2 230450599 230450599 G A DNER Silent p.L274L 0.25 TCGA-L5-A4OO-01 2 234775170 234775170 C T MSL3P1 RNA 0.11 TCGA-L5-A4OO-01 2 240016639 240016639 C T HDAC4 Intron 0.19 TCGA-L5-A4OO-01 2 26700314 26700314 C T OTOF Silent p.R792R 0.06 TCGA-L5-A4OO-01 2 73868104 73868104 G A NAT8 Missense_Mutation p.H218Y 0.28 tolerated(1) benign(0.001) TCGA-L5-A4OO-01 2 99953984 99953984 G A EIF5B 5'UTR 0.24 TCGA-L5-A4OO-01 3 101304301 101304301 A G PCNP Silent p.P100P 0.20 TCGA-L5-A4OO-01 3 108698360 108698360 A T MORC1 Splice_Site p.X826_splice 0.31 TCGA-L5-A4OO-01 3 113346614 113346614 T A SIDT1 3'UTR 0.09 TCGA-L5-A4OO-01 3 130735055 130735055 A G ASTE1 Missense_Mutation p.C548R 0.13 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OO-01 3 142037736 142037736 C T XRN1 Missense_Mutation p.V1471I 0.14 tolerated_low_confidence(0.37) benign(0.007) TCGA-L5-A4OO-01 3 147105846 147105846 C T ZIC4 3'UTR 0.29 TCGA-L5-A4OO-01 3 167437888 167437888 T C PDCD10 Missense_Mutation p.M20V 0.25 tolerated(0.2) benign(0.003) TCGA-L5-A4OO-01 3 39178769 39178769 C A TTC21A Missense_Mutation p.S1121Y 0.09 deleterious(0.04) benign(0.067) TCGA-L5-A4OO-01 3 47449841 47449841 C G PTPN23 Missense_Mutation p.F397L 0.21 unknown(0) TCGA-L5-A4OO-01 3 55500855 55500855 T G WNT5A 3'UTR 0.14 TCGA-L5-A4OO-01 4 119754838 119754838 C T SEC24D Missense_Mutation p.G5D 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.87) TCGA-L5-A4OO-01 4 134071343 134071343 C A PCDH10 Silent p.V16V 0.17 TCGA-L5-A4OO-01 4 139086358 139086358 T C SLC7A11 3'UTR 0.26 TCGA-L5-A4OO-01 4 155241544 155241544 T C DCHS2 Silent p.L1214L 0.17 TCGA-L5-A4OO-01 4 169351738 169351738 T A DDX60L Missense_Mutation p.Y523F 0.12 tolerated(1) benign(0) TCGA-L5-A4OO-01 4 2250814 2250814 C T MXD4 3'UTR 0.33 TCGA-L5-A4OO-01 4 2674072 2674072 T G FAM193A Nonsense_Mutation p.Y477* 0.39 TCGA-L5-A4OO-01 4 46995416 46995416 G A GABRA4 Missense_Mutation p.A9V 0.25 tolerated_low_confidence(0.32) benign(0.002) TCGA-L5-A4OO-01 4 74847138 74847138 G T PF4 Missense_Mutation p.L72M 0.24 tolerated(0.22) benign(0.118) TCGA-L5-A4OO-01 5 118970289 118970289 G C FAM170A Missense_Mutation p.E282D 0.22 tolerated(0.25) benign(0.027) TCGA-L5-A4OO-01 5 132553042 132553042 T - FSTL4 Frame_Shift_Del p.N496Mfs*26 0.14 TCGA-L5-A4OO-01 5 140209709 140209709 C T PCDHA6 Missense_Mutation p.A678V 0.25 tolerated_low_confidence(0.24) benign(0.011) TCGA-L5-A4OO-01 5 140263491 140263491 C A PCDHA13 Silent p.G546G 0.21 TCGA-L5-A4OO-01 5 140734952 140734952 G A PCDHGA4 Missense_Mutation p.R62H 0.21 tolerated_low_confidence(0.15) benign(0.243) TCGA-L5-A4OO-01 5 154393463 154393463 G A KIF4B Missense_Mutation p.R15H 0.07 deleterious(0.01) probably_damaging(0.969) TCGA-L5-A4OO-01 5 176082007 176082007 G A TSPAN17 Missense_Mutation p.V190I 0.06 tolerated(0.58) benign(0.052) TCGA-L5-A4OO-01 5 176868996 176868996 G A GRK6 3'UTR 0.16 TCGA-L5-A4OO-01 5 89968456 89968456 G A GPR98 Missense_Mutation p.E1616K 0.18 probably_damaging(0.973) TCGA-L5-A4OO-01 6 110146523 110146523 T C FIG4 3'UTR 0.22 TCGA-L5-A4OO-01 6 117894703 117894703 C T GOPC Missense_Mutation p.R248H 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A4OO-01 6 125623087 125623087 C T HDDC2 5'UTR 0.12 TCGA-L5-A4OO-01 6 39602636 39602636 C A KIF6 Missense_Mutation p.L166F 0.13 deleterious(0) probably_damaging(0.941) TCGA-L5-A4OO-01 6 62390941 62390941 C T KHDRBS2 Missense_Mutation p.R326H 0.12 deleterious(0.02) possibly_damaging(0.482) TCGA-L5-A4OO-01 7 1098297 1098297 C T GPR146 3'UTR 0.25 TCGA-L5-A4OO-01 7 122194686 122194686 C T CADPS2 Missense_Mutation p.V465I 0.15 tolerated(0.06) benign(0.026) TCGA-L5-A4OO-01 7 127896311 127896311 G A LEP 3'UTR 0.27 TCGA-L5-A4OO-01 7 43351452 43351452 C T HECW1 Nonsense_Mutation p.R40* 0.21 TCGA-L5-A4OO-01 7 65617791 65617791 G T CRCP 3'UTR 0.38 TCGA-L5-A4OO-01 7 74191618 74191618 C T NCF1 Silent p.Y26Y 0.15 TCGA-L5-A4OO-01 7 93519535 93519535 C A TFPI2 Missense_Mutation p.R62L 0.22 tolerated(0.11) benign(0.026) TCGA-L5-A4OO-01 7 96746959 96746959 T G ACN9 5'UTR 0.26 TCGA-L5-A4OO-01 8 107782449 107782449 C T ABRA 5'UTR 0.17 TCGA-L5-A4OO-01 8 145245830 145245830 G T MROH1 Nonsense_Mutation p.E236* 0.16 TCGA-L5-A4OO-01 8 85833500 85833500 G T RALYL 3'UTR 0.42 TCGA-L5-A4OO-01 9 102628620 102628620 A G NR4A3 3'UTR 0.21 TCGA-L5-A4OO-01 9 106857810 106857810 C T SMC2 Silent p.L49L 0.14 TCGA-L5-A4OO-01 9 139946015 139946016 TC - ENTPD2 Frame_Shift_Del p.R111Tfs*42 0.37 TCGA-L5-A4OO-01 9 17330768 17330768 C T CNTLN Nonsense_Mutation p.R494* 0.26 TCGA-L5-A4OO-01 9 21974695 21974695 G T CDKN2A Nonsense_Mutation p.Y44* 0.36 TCGA-L5-A4OO-01 9 43628000 43628000 C A SPATA31A6 Silent p.L229L 0.33 TCGA-L5-A4OO-01 9 98638319 98638319 G T ERCC6L2 Missense_Mutation p.R11L 0.35 deleterious_low_confidence(0.05) benign(0.008) TCGA-L5-A4OO-01 X 21861368 21861368 G T MBTPS2 Missense_Mutation p.W52C 0.43 tolerated(0.06) benign(0.263) TCGA-L5-A4OO-01 X 91873880 91873880 C T PCDH11X Missense_Mutation p.R1329C 0.24 deleterious_low_confidence(0.01) benign(0.394) TCGA-L5-A4OO-01 X 9900611 9900611 G A SHROOM2 Silent p.T1096T 0.50 TCGA-L5-A4OO-01 Y 6939642 6939642 C T TBL1Y Silent p.F258F 0.39 TCGA-L5-A4OP-01 10 134682830 134682830 G A TTC40 Missense_Mutation p.R1520C 0.36 deleterious(0.01) benign(0) TCGA-L5-A4OP-01 10 23731074 23731074 A G OTUD1 3'UTR 0.40 TCGA-L5-A4OP-01 10 97819606 97819606 G A CCNJ 3'Flank 0.07 TCGA-L5-A4OP-01 11 118352585 118352585 C T KMT2A Nonsense_Mutation p.R1264* 0.89 TCGA-L5-A4OP-01 11 1901450 1901450 A G LSP1 Missense_Mutation p.M191V 0.51 tolerated_low_confidence(0.29) benign(0.004) TCGA-L5-A4OP-01 11 2356961 2356961 C T CD81-AS1 Intron 0.74 TCGA-L5-A4OP-01 11 31810501 31810501 T C PAX6 3'UTR 0.42 TCGA-L5-A4OP-01 11 35515725 35515725 C T PAMR1 Missense_Mutation p.G57R 0.52 deleterious(0.04) probably_damaging(0.995) TCGA-L5-A4OP-01 11 45892001 45892001 C T CRY2 Silent p.I510I 0.68 TCGA-L5-A4OP-01 11 50003542 50003542 A C OR4C12 Missense_Mutation p.F166V 0.56 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OP-01 11 5757862 5757862 C A OR56B1 Missense_Mutation p.P39H 0.55 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OP-01 11 6292639 6292639 A G CCKBR Missense_Mutation p.T404A 0.56 tolerated(0.1) benign(0.218) TCGA-L5-A4OP-01 11 96098165 96098165 A G CCDC82 Silent p.N453N 0.60 TCGA-L5-A4OP-01 12 104517094 104517094 G A NFYB Silent p.I113I 0.44 TCGA-L5-A4OP-01 12 111884777 111884777 T C SH2B3 Missense_Mutation p.V289A 0.33 tolerated(0.79) possibly_damaging(0.869) TCGA-L5-A4OP-01 12 112665918 112665918 G A HECTD4 Missense_Mutation p.R2131W 0.59 probably_damaging(0.98) TCGA-L5-A4OP-01 12 15370380 15370380 G A RERG Missense_Mutation p.A15V 0.62 deleterious(0.04) benign(0.027) TCGA-L5-A4OP-01 12 7254566 7254566 G A C1RL Missense_Mutation p.R140C 0.72 tolerated(0.14) benign(0.076) TCGA-L5-A4OP-01 12 78444891 78444891 T C NAV3 Missense_Mutation p.L827P 0.58 deleterious(0) benign(0.1) TCGA-L5-A4OP-01 12 80201093 80201093 C T PPP1R12A Missense_Mutation p.R523Q 0.71 tolerated(0.05) probably_damaging(0.99) TCGA-L5-A4OP-01 13 103385590 103385590 C T CCDC168 Nonsense_Mutation p.W1190* 0.09 TCGA-L5-A4OP-01 13 103385951 103385951 G T CCDC168 Missense_Mutation p.S1070Y 0.24 deleterious(0) unknown(0) TCGA-L5-A4OP-01 13 23911144 23911144 C A SACS Missense_Mutation p.D2291Y 0.23 benign(0.206) TCGA-L5-A4OP-01 13 35751233 35751233 G A NBEA Missense_Mutation p.R1552Q 0.52 deleterious(0) probably_damaging(0.97) TCGA-L5-A4OP-01 14 104251168 104251168 G A PPP1R13B Nonsense_Mutation p.R81* 0.30 TCGA-L5-A4OP-01 14 26915995 26915995 C G NOVA1 3'UTR 0.19 TCGA-L5-A4OP-01 14 86092284 86092284 T C FLRT2 3'UTR 0.32 TCGA-L5-A4OP-01 14 94964544 94964544 G A SERPINA12 Missense_Mutation p.A64V 0.45 tolerated(0.2) benign(0.076) TCGA-L5-A4OP-01 15 32815390 32815390 T A RP11-632K20.7 RNA 0.37 TCGA-L5-A4OP-01 15 54305554 54305554 C T UNC13C Missense_Mutation p.R152C 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A4OP-01 15 77320223 77320223 A T PSTPIP1 Missense_Mutation p.S129C 0.16 deleterious(0.04) benign(0.246) TCGA-L5-A4OP-01 15 83686615 83686615 C G BTBD1 3'UTR 0.33 TCGA-L5-A4OP-01 15 90021169 90021169 C T RHCG Missense_Mutation p.A292T 0.54 tolerated(0.1) probably_damaging(0.964) TCGA-L5-A4OP-01 16 1256186 1256186 C T CACNA1H Missense_Mutation p.R896C 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OP-01 16 29857512 29857512 G A MVP Silent p.A724A 0.35 TCGA-L5-A4OP-01 16 31201622 31201636 GGTGGTGGCAGTGGT - FUS In_Frame_Del p.S402_G406del 0.29 TCGA-L5-A4OP-01 16 51171261 51171261 G A SALL1 Missense_Mutation p.A1246V 0.35 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OP-01 16 65006915 65006915 C G CDH11 Missense_Mutation p.D428H 0.19 deleterious(0) possibly_damaging(0.879) TCGA-L5-A4OP-01 16 67876687 67876687 C T THAP11 Missense_Mutation p.P77L 0.10 deleterious(0) unknown(0) TCGA-L5-A4OP-01 16 682590 682590 G A WFIKKN1 Silent p.A60A 0.25 TCGA-L5-A4OP-01 16 77233341 77233341 G A MON1B 3'UTR 0.32 TCGA-L5-A4OP-01 16 87799505 87799505 G T KLHDC4 5'UTR 0.42 TCGA-L5-A4OP-01 17 11607686 11607686 G A DNAH9 Missense_Mutation p.R1773Q 0.57 probably_damaging(1) TCGA-L5-A4OP-01 17 18036644 18036644 T C MYO15A Missense_Mutation p.F1476L 0.47 unknown(0) TCGA-L5-A4OP-01 17 44851047 44851047 G A WNT3 Silent p.P103P 0.18 TCGA-L5-A4OP-01 17 44851241 44851241 C A WNT3 Missense_Mutation p.G39C 0.25 deleterious(0) possibly_damaging(0.687) TCGA-L5-A4OP-01 17 46689724 46689724 A T HOXB8 3'UTR 0.37 TCGA-L5-A4OP-01 17 60743591 60743591 C T MRC2 Silent p.Y219Y 0.31 TCGA-L5-A4OP-01 17 71819932 71819932 T G LINC00469 RNA 0.35 TCGA-L5-A4OP-01 17 7577561 7577566 ACTGTT - TP53 In_Frame_Del p.N239_S240del 0.57 TCGA-L5-A4OP-01 18 50918219 50918219 C T DCC Missense_Mutation p.R884W 0.53 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OP-01 18 50923732 50923732 A G DCC Missense_Mutation p.M915V 0.52 tolerated(0.08) benign(0.103) TCGA-L5-A4OP-01 19 12842231 12842231 C T C19orf43 Missense_Mutation p.G117D 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A4OP-01 19 15852244 15852244 C T OR10H3 Silent p.L14L 0.46 TCGA-L5-A4OP-01 19 37239131 37239131 G A ZNF850 Silent p.F937F 0.43 TCGA-L5-A4OP-01 19 37482690 37482690 G A ZNF568 Silent p.L125L 0.43 TCGA-L5-A4OP-01 19 3810782 3810782 C T ZFR2 Missense_Mutation p.R800Q 0.35 tolerated(1) benign(0.002) TCGA-L5-A4OP-01 19 43428906 43428906 T C PSG7 3'UTR 0.35 TCGA-L5-A4OP-01 19 5220288 5220288 C T PTPRS Missense_Mutation p.D1178N 0.55 deleterious(0) benign(0.423) TCGA-L5-A4OP-01 19 53058029 53058029 G A ZNF808 Silent p.E620E 0.48 TCGA-L5-A4OP-01 19 7761792 7761792 C T FCER2 Missense_Mutation p.E130K 0.43 tolerated(0.06) benign(0.426) TCGA-L5-A4OP-01 1 150444985 150444985 C G RPRD2 Missense_Mutation p.N1187K 0.54 deleterious_low_confidence(0.01) benign(0.114) TCGA-L5-A4OP-01 1 154515285 154515285 C T TDRD10 Missense_Mutation p.P164L 0.21 deleterious(0) possibly_damaging(0.666) TCGA-L5-A4OP-01 1 160589583 160589583 G C SLAMF1 Missense_Mutation p.Q283E 0.50 deleterious(0) probably_damaging(0.957) TCGA-L5-A4OP-01 1 169702094 169702094 G A SELE Missense_Mutation p.T28M 0.56 tolerated(0.12) benign(0.007) TCGA-L5-A4OP-01 1 197704774 197704774 C T DENND1B Intron 0.53 TCGA-L5-A4OP-01 1 207218543 207218543 C T YOD1 3'UTR 0.36 TCGA-L5-A4OP-01 1 225533806 225533806 G A DNAH14 Silent p.A2711A 0.38 TCGA-L5-A4OP-01 1 245018808 245018808 G A HNRNPU Missense_Mutation p.P757L 0.25 tolerated(0.15) unknown(0) TCGA-L5-A4OP-01 1 74670700 74670700 C T FPGT Silent p.V323V 0.67 TCGA-L5-A4OP-01 1 86590878 86590878 C T COL24A1 Missense_Mutation p.D381N 0.36 tolerated(0.63) benign(0) TCGA-L5-A4OP-01 20 18123481 18123481 C G CSRP2BP Silent p.L59L 0.31 TCGA-L5-A4OP-01 20 6031506 6031506 C T LRRN4 Missense_Mutation p.C260Y 0.30 deleterious(0) probably_damaging(0.914) TCGA-L5-A4OP-01 22 46326986 46326986 C T WNT7B Missense_Mutation p.G188S 0.39 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A4OP-01 2 141625248 141625248 T G LRP1B Missense_Mutation p.K1497T 0.38 benign(0.003) TCGA-L5-A4OP-01 2 151326023 151326023 C T RND3 3'UTR 0.20 TCGA-L5-A4OP-01 2 162567135 162567135 T G SLC4A10 Intron 0.35 TCGA-L5-A4OP-01 2 168107319 168107319 C T XIRP2 Silent p.N3139N 0.50 TCGA-L5-A4OP-01 2 169940039 169940039 G A DHRS9 Missense_Mutation p.V172I 0.40 tolerated(0.42) benign(0.015) TCGA-L5-A4OP-01 2 196741378 196741378 G T DNAH7 Missense_Mutation p.L2003I 0.23 tolerated(0.47) benign(0.007) TCGA-L5-A4OP-01 2 197531526 197531526 A T CCDC150 Missense_Mutation p.K282N 0.17 tolerated(0.1) benign(0.006) TCGA-L5-A4OP-01 2 204240780 204240780 G C ABI2 Intron 0.33 TCGA-L5-A4OP-01 2 204295935 204295935 G T ABI2 3'UTR 0.31 TCGA-L5-A4OP-01 2 215609878 215609878 G T BARD1 Missense_Mutation p.H606N 0.47 deleterious(0) probably_damaging(1) TCGA-L5-A4OP-01 2 23926687 23926687 A G KLHL29 Missense_Mutation p.N800D 0.08 tolerated(0.08) benign(0.236) TCGA-L5-A4OP-01 2 241991277 241991277 G A SNED1 Missense_Mutation p.G618R 0.31 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OP-01 2 27291605 27291605 G A AGBL5 Missense_Mutation p.R783Q 0.32 tolerated_low_confidence(0.08) benign(0.009) TCGA-L5-A4OP-01 2 5834893 5834893 A T SOX11 3'UTR 0.36 TCGA-L5-A4OP-01 2 70906066 70906066 G A ADD2 Missense_Mutation p.H385Y 0.36 tolerated(1) benign(0.001) TCGA-L5-A4OP-01 2 73613049 73613049 A C ALMS1 Missense_Mutation p.E18A 0.12 benign(0.047) TCGA-L5-A4OP-01 2 73613052 73613052 A C ALMS1 Missense_Mutation p.E19A 0.24 benign(0.068) TCGA-L5-A4OP-01 2 76975989 76975989 G A LRRTM4 Silent p.I535I 0.33 TCGA-L5-A4OP-01 2 77746402 77746402 C T LRRTM4 Missense_Mutation p.R198Q 0.63 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OP-01 3 101370141 101370141 G A ZBTB11 Missense_Mutation p.L1011F 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OP-01 3 147105931 147105931 C T ZIC4 3'UTR 0.33 TCGA-L5-A4OP-01 3 186980434 186980434 C G MASP1 Missense_Mutation p.Q104H 0.50 deleterious(0.01) benign(0.074) TCGA-L5-A4OP-01 3 38126915 38126915 G A DLEC1 Missense_Mutation p.R471Q 0.53 deleterious(0.02) possibly_damaging(0.814) TCGA-L5-A4OP-01 4 126408614 126408614 A - FAT4 Frame_Shift_Del p.N4312Mfs*83 0.12 TCGA-L5-A4OP-01 4 138442670 138442670 G T PCDH18 Missense_Mutation p.A974E 0.50 tolerated(0.94) benign(0.021) TCGA-L5-A4OP-01 4 183722096 183722096 C A TENM3 3'UTR 0.30 TCGA-L5-A4OP-01 4 41621412 41621412 G A LIMCH1 Missense_Mutation p.S297N 0.36 deleterious(0) possibly_damaging(0.765) TCGA-L5-A4OP-01 4 71275215 71275215 T G PROL1 Missense_Mutation p.L57R 0.27 tolerated_low_confidence(0.09) possibly_damaging(0.883) TCGA-L5-A4OP-01 5 140243029 140243029 G A AC005609.1 5'UTR 0.31 TCGA-L5-A4OP-01 5 140481518 140481518 C A PCDHB3 Missense_Mutation p.P429T 0.46 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-L5-A4OP-01 5 140481519 140481519 C A PCDHB3 Missense_Mutation p.P429H 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OP-01 5 167690957 167690957 T A TENM2 3'Flank 0.46 TCGA-L5-A4OP-01 5 5209225 5209225 C A ADAMTS16 Missense_Mutation p.L491I 0.38 deleterious(0) probably_damaging(0.985) TCGA-L5-A4OP-01 6 143091582 143091582 C T HIVEP2 Missense_Mutation p.V1432M 0.33 deleterious(0.01) possibly_damaging(0.502) TCGA-L5-A4OP-01 6 161990396 161990396 T C PARK2 Silent p.G308G 0.47 TCGA-L5-A4OP-01 6 31322279 31322279 T G HLA-B Missense_Mutation p.D357A 0.45 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-L5-A4OP-01 6 36298422 36298422 C A C6orf222 Missense_Mutation p.A16S 0.41 deleterious(0.01) benign(0.031) TCGA-L5-A4OP-01 6 70877936 70877936 G A COL19A1 Missense_Mutation p.R822Q 0.31 tolerated(0.1) possibly_damaging(0.573) TCGA-L5-A4OP-01 6 88173824 88173824 A G C6ORF165 Silent p.P575P 0.16 TCGA-L5-A4OP-01 7 116199315 116199315 C T CAV1 Missense_Mutation p.R171C 0.41 deleterious(0) probably_damaging(0.952) TCGA-L5-A4OP-01 7 120385969 120385969 A C KCND2 Missense_Mutation p.K535Q 0.54 tolerated_low_confidence(0.1) benign(0.14) TCGA-L5-A4OP-01 7 129028898 129028898 G A AHCYL2 Silent p.A159A 0.31 TCGA-L5-A4OP-01 7 132937888 132937888 A G EXOC4 Missense_Mutation p.R11G 0.21 tolerated(0.06) benign(0.11) TCGA-L5-A4OP-01 7 136699845 136699845 A C CHRM2 Missense_Mutation p.N78T 0.51 deleterious(0) probably_damaging(1) TCGA-L5-A4OP-01 7 141427103 141427103 G A WEE2 Splice_Site p.X465_splice 0.26 TCGA-L5-A4OP-01 7 15666529 15666529 T G MEOX2 Missense_Mutation p.N178H 0.39 deleterious(0.04) benign(0.205) TCGA-L5-A4OP-01 7 16501938 16501938 C T SOSTDC1 3'UTR 0.26 TCGA-L5-A4OP-01 7 37780495 37780495 T A GPR141 Missense_Mutation p.F167Y 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A4OP-01 7 4188991 4188991 C A SDK1 Silent p.S1507S 0.09 TCGA-L5-A4OP-01 7 44148552 44148552 C T AEBP1 Missense_Mutation p.T332I 0.36 deleterious_low_confidence(0) benign(0.137) TCGA-L5-A4OP-01 7 82784982 82784982 C G PCLO Missense_Mutation p.Q325H 0.50 unknown(0) TCGA-L5-A4OP-01 7 86394478 86394478 G A GRM3 Missense_Mutation p.R6K 0.39 tolerated_low_confidence(0.6) benign(0) TCGA-L5-A4OP-01 7 93054459 93054459 T G CALCR 3'UTR 0.06 TCGA-L5-A4OP-01 8 113293572 113293572 C G CSMD3 Missense_Mutation p.Q3113H 0.44 tolerated(0.06) probably_damaging(0.947) TCGA-L5-A4OP-01 8 17814238 17814238 C G PCM1 Nonsense_Mutation p.S533* 0.36 TCGA-L5-A4OP-01 8 21840253 21840253 G T XPO7 Nonsense_Mutation p.E403* 0.32 TCGA-L5-A4OP-01 8 26240565 26240565 G A BNIP3L 5'UTR 0.67 TCGA-L5-A4OP-01 8 52323850 52323850 T G PXDNL Missense_Mutation p.E674D 0.43 tolerated(0.32) benign(0.008) TCGA-L5-A4OP-01 8 53586543 53586543 C T RB1CC1 Silent p.Q288Q 0.28 TCGA-L5-A4OP-01 8 75945324 75945324 T - CRISPLD1 3'UTR 0.38 TCGA-L5-A4OP-01 8 77778799 77778799 C G ZFHX4 3'UTR 0.39 TCGA-L5-A4OP-01 9 107360878 107360878 A C OR13C5 Missense_Mutation p.L273V 0.34 tolerated(0.41) benign(0.032) TCGA-L5-A4OP-01 9 130265235 130265235 G A LRSAM1 3'UTR 0.33 TCGA-L5-A4OP-01 9 21974684 21974684 G A CDKN2A Missense_Mutation p.P48L 0.59 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A4OP-01 9 79122132 79122132 C T GCNT1 3'UTR 0.24 TCGA-L5-A4OP-01 X 106310569 106310569 T C RBM41 3'UTR 0.33 TCGA-L5-A4OP-01 X 114082577 114082577 C T HTR2C Missense_Mutation p.P121S 0.32 deleterious(0) possibly_damaging(0.854) TCGA-L5-A4OP-01 X 118767380 118767380 C A SEPT6 Missense_Mutation p.Q344H 0.25 tolerated(0.05) probably_damaging(0.993) TCGA-L5-A4OP-01 X 119390382 119390382 A G ZBTB33 3'UTR 0.47 TCGA-L5-A4OP-01 X 135279019 135279019 G A FHL1 Intron 0.22 TCGA-L5-A4OP-01 X 152845487 152845487 C A ATP2B3 Missense_Mutation p.P1132T 0.25 deleterious(0.04) benign(0.375) TCGA-L5-A4OP-01 X 153543622 153543622 T A TKTL1 Missense_Mutation p.S322T 0.31 tolerated(0.14) probably_damaging(0.955) TCGA-L5-A4OP-01 X 155009947 155009947 A G SPRY3 3'UTR 0.22 TCGA-L5-A4OP-01 X 30323947 30323947 A G NR0B1 Intron 0.30 TCGA-L5-A4OP-01 X 48324664 48324664 G T SLC38A5 Missense_Mutation p.A122E 0.36 deleterious(0.03) benign(0.025) TCGA-L5-A4OP-01 X 48368281 48368281 G A PORCN Missense_Mutation p.G25S 0.27 tolerated(0.11) possibly_damaging(0.666) TCGA-L5-A4OP-01 X 48771336 48771336 C A PIM2 3'UTR 0.32 TCGA-L5-A4OP-01 X 49076164 49076164 T G CACNA1F Missense_Mutation p.E835D 0.43 tolerated(0.26) benign(0) TCGA-L5-A4OP-01 X 56593349 56593349 G T UBQLN2 3'UTR 0.40 TCGA-L5-A4OP-01 X 69595951 69595951 T A KIF4A Missense_Mutation p.M642K 0.15 tolerated(0.68) benign(0.013) TCGA-L5-A4OP-01 X 70823925 70823925 C T ACRC Silent p.D266D 0.27 TCGA-L5-A4OP-01 X 75004084 75004084 T G MAGEE2 Missense_Mutation p.K268T 0.17 deleterious(0) probably_damaging(0.951) TCGA-L5-A4OP-01 X 78216863 78216863 C T P2RY10 Silent p.I282I 0.27 TCGA-L5-A4OP-01 X 84586003 84586003 G A POF1B Missense_Mutation p.T269M 0.38 tolerated(0.09) benign(0.045) TCGA-L5-A4OP-01 X 85218846 85218846 C T CHM Missense_Mutation p.G176R 0.47 tolerated(0.51) benign(0.004) TCGA-L5-A4OQ-01 10 103988606 103988606 G A ELOVL3 Missense_Mutation p.R137H 0.26 deleterious(0) probably_damaging(0.961) TCGA-L5-A4OQ-01 10 111647946 111647946 A G XPNPEP1 Silent p.Y171Y 0.25 TCGA-L5-A4OQ-01 10 126676804 126676804 C T CTBP2 3'Flank 0.26 TCGA-L5-A4OQ-01 10 128114324 128114324 A T C10orf90 3'UTR 0.27 TCGA-L5-A4OQ-01 10 27539734 27539734 G A RP11-85G18.6 3'Flank 0.22 TCGA-L5-A4OQ-01 10 55782711 55782711 T G PCDH15 Missense_Mutation p.T823P 0.41 tolerated(0.07) possibly_damaging(0.65) TCGA-L5-A4OQ-01 11 104761930 104761930 G A CASP12 Missense_Mutation p.P212S 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A4OQ-01 11 19247153 19247153 G - E2F8 Frame_Shift_Del p.P679Qfs*2 0.28 TCGA-L5-A4OQ-01 11 5322607 5322607 C T OR51B4 Silent p.T190T 0.19 TCGA-L5-A4OQ-01 11 56230100 56230100 T C OR5M9 Missense_Mutation p.R260G 0.19 deleterious(0) benign(0.219) TCGA-L5-A4OQ-01 11 597555 597555 G A PHRF1 Silent p.T293T 0.32 TCGA-L5-A4OQ-01 11 6867799 6867799 A T OR10A5 Missense_Mutation p.S296C 0.29 deleterious(0) benign(0.246) TCGA-L5-A4OQ-01 12 123285733 123285733 A C CCDC62 Missense_Mutation p.K347T 0.39 deleterious(0.01) possibly_damaging(0.843) TCGA-L5-A4OQ-01 12 56510561 56510561 A G RPL41 5'UTR 0.09 TCGA-L5-A4OQ-01 13 103443257 103443257 G T KDELC1 Missense_Mutation p.F359L 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OQ-01 13 24444223 24444223 G A MIPEP Missense_Mutation p.R239C 0.17 deleterious(0.03) benign(0.028) TCGA-L5-A4OQ-01 13 95055900 95055901 AG - GPC6 3'UTR 0.29 TCGA-L5-A4OQ-01 14 19904273 19904273 C T BMS1P18 RNA 0.20 TCGA-L5-A4OQ-01 14 45623962 45623962 C T FANCM Silent p.L416L 0.26 TCGA-L5-A4OQ-01 14 80327445 80327445 G A NRXN3 Intron 0.05 TCGA-L5-A4OQ-01 15 100331592 100331592 G A AC090825.1 5'Flank 0.26 TCGA-L5-A4OQ-01 15 40861777 40861777 C G RPUSD2 Missense_Mutation p.P81A 0.20 tolerated_low_confidence(0.37) benign(0.004) TCGA-L5-A4OQ-01 15 74888323 74888323 C T ARID3B 3'UTR 0.16 TCGA-L5-A4OQ-01 16 54966722 54966722 G A IRX5 Missense_Mutation p.E188K 0.27 deleterious(0.02) possibly_damaging(0.905) TCGA-L5-A4OQ-01 16 9943750 9943750 G A GRIN2A Silent p.S397S 0.09 TCGA-L5-A4OQ-01 17 11757419 11757419 C T DNAH9 Missense_Mutation p.P3203S 0.24 possibly_damaging(0.758) TCGA-L5-A4OQ-01 17 2266394 2266394 G A SGSM2 Missense_Mutation p.R213H 0.50 deleterious(0.04) benign(0.294) TCGA-L5-A4OQ-01 17 27233372 27233372 G T PHF12 Missense_Mutation p.H948Q 0.21 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OQ-01 17 38991667 38991667 G A TMEM99 3'UTR 0.50 TCGA-L5-A4OQ-01 17 56247408 56247408 G A OR4D2 Missense_Mutation p.R131H 0.51 tolerated(1) benign(0) TCGA-L5-A4OQ-01 17 61895368 61895369 AT - DDX42 Frame_Shift_Del p.T811* 0.19 TCGA-L5-A4OQ-01 17 7577545 7577545 T C TP53 Missense_Mutation p.M246V 0.48 deleterious(0) probably_damaging(0.947) TCGA-L5-A4OQ-01 17 79502077 79502077 G T FSCN2 Splice_Site p.X276_splice 0.25 TCGA-L5-A4OQ-01 18 13056228 13056228 C A CEP192 Silent p.G1213G 0.17 TCGA-L5-A4OQ-01 18 50961530 50961530 A C DCC Silent p.G1060G 0.55 TCGA-L5-A4OQ-01 18 909674 909674 C T ADCYAP1 3'UTR 0.36 TCGA-L5-A4OQ-01 19 1255011 1255011 C A MIDN Silent p.I269I 0.50 TCGA-L5-A4OQ-01 19 15726500 15726500 G C AD000091.2 5'Flank 0.24 TCGA-L5-A4OQ-01 19 43228177 43228177 G T PSG3 Missense_Mutation p.A415D 0.34 tolerated(0.2) benign(0.005) TCGA-L5-A4OQ-01 19 45260408 45260408 G C BCL3 Silent p.P218P 0.13 TCGA-L5-A4OQ-01 19 47112420 47112420 G A CALM3 3'UTR 0.43 TCGA-L5-A4OQ-01 19 47823663 47823663 G A C5AR1 Missense_Mutation p.G210D 0.05 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OQ-01 19 53085583 53085583 G C ZNF701 Missense_Mutation p.E157Q 0.23 tolerated(1) possibly_damaging(0.463) TCGA-L5-A4OQ-01 19 55869940 55869940 T A FAM71E2 Nonsense_Mutation p.K766* 0.11 TCGA-L5-A4OQ-01 19 55943782 55943782 G A SHISA7 3'UTR 0.25 TCGA-L5-A4OQ-01 19 8592306 8592306 A G MYO1F Missense_Mutation p.V797A 0.29 deleterious(0.04) benign(0.314) TCGA-L5-A4OQ-01 19 9069914 9069914 G T MUC16 Silent p.I5844I 0.21 TCGA-L5-A4OQ-01 1 113213798 113213798 C G CAPZA1 3'UTR 0.33 TCGA-L5-A4OQ-01 1 113234375 113234375 C T MOV10 Nonsense_Mutation p.Q309* 0.25 TCGA-L5-A4OQ-01 1 150779260 150779260 G T CTSK Missense_Mutation p.L8M 0.14 tolerated(0.07) benign(0.066) TCGA-L5-A4OQ-01 1 155883021 155883021 G C KIAA0907 3'UTR 0.12 TCGA-L5-A4OQ-01 1 158299185 158299185 C A CD1B Missense_Mutation p.E287D 0.23 deleterious(0) benign(0.038) TCGA-L5-A4OQ-01 1 182550476 182550476 G A RNASEL Missense_Mutation p.R597W 0.29 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OQ-01 1 232650479 232650479 A G SIPA1L2 Silent p.L203L 0.16 TCGA-L5-A4OQ-01 20 17462531 17462531 C G PCSK2 Missense_Mutation p.A578G 0.21 tolerated(0.5) benign(0.001) TCGA-L5-A4OQ-01 20 2797573 2797573 C T TMEM239 Missense_Mutation p.P215L 0.12 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-L5-A4OQ-01 20 4713189 4713189 G C PRNT Missense_Mutation p.T45R 0.06 tolerated_low_confidence(0.19) possibly_damaging(0.711) TCGA-L5-A4OQ-01 21 45175962 45175962 C T PDXK 3'UTR 0.18 TCGA-L5-A4OQ-01 22 18640567 18640567 G A USP18 Missense_Mutation p.R46K 0.20 tolerated(0.73) benign(0.013) TCGA-L5-A4OQ-01 22 19468537 19468537 T - CDC45 Frame_Shift_Del p.E59Kfs*17 0.15 TCGA-L5-A4OQ-01 2 132919286 132919286 G A ANKRD30BL 5'UTR 0.45 TCGA-L5-A4OQ-01 2 1677547 1677547 A C PXDN Missense_Mutation p.L296V 0.26 tolerated(0.26) benign(0.259) TCGA-L5-A4OQ-01 2 233349744 233349744 C T ECEL1 Missense_Mutation p.A305T 0.25 tolerated(0.52) benign(0.064) TCGA-L5-A4OQ-01 2 70905912 70905912 G A ADD2 Missense_Mutation p.T436M 0.21 deleterious(0) probably_damaging(0.958) TCGA-L5-A4OQ-01 2 71755483 71755483 G A DYSF Silent p.K444K 0.15 TCGA-L5-A4OQ-01 3 134898754 134898754 C T EPHB1 Silent p.N604N 0.29 TCGA-L5-A4OQ-01 3 190127745 190127745 G A CLDN16 Missense_Mutation p.A280T 0.18 tolerated(0.5) benign(0.002) TCGA-L5-A4OQ-01 3 195481170 195481170 G A MUC4 Missense_Mutation p.P5081L 0.31 benign(0.05) TCGA-L5-A4OQ-01 3 38180161 38180161 C T MYD88 Silent p.P3P 0.36 TCGA-L5-A4OQ-01 3 3886551 3886551 G T LRRN1 Missense_Mutation p.V76L 0.31 tolerated(0.06) possibly_damaging(0.533) TCGA-L5-A4OQ-01 3 63823667 63823667 G T THOC7 Silent p.R113R 0.33 TCGA-L5-A4OQ-01 4 145633170 145633171 - A HHIP Frame_Shift_Ins p.N459Kfs*17 0.21 TCGA-L5-A4OQ-01 4 23795826 23795826 T A PPARGC1A 3'UTR 0.24 TCGA-L5-A4OQ-01 4 71114982 71114982 G T CSN3 Missense_Mutation p.A119S 0.21 deleterious(0.04) unknown(0) TCGA-L5-A4OQ-01 5 1037676 1037676 C T NKD2 Intron 0.27 TCGA-L5-A4OQ-01 5 140347423 140347423 G A PCDHAC2 Missense_Mutation p.V358M 0.11 deleterious(0) possibly_damaging(0.879) TCGA-L5-A4OQ-01 5 173385952 173385952 T A CPEB4 3'UTR 0.11 TCGA-L5-A4OQ-01 5 26915767 26915767 G T CDH9 Missense_Mutation p.T165N 0.27 tolerated(0.31) benign(0.002) TCGA-L5-A4OQ-01 5 67589537 67589537 G A PIK3R1 Missense_Mutation p.D434N 0.26 deleterious(0.01) probably_damaging(0.96) TCGA-L5-A4OQ-01 5 95067315 95067315 G T RHOBTB3 5'UTR 0.22 TCGA-L5-A4OQ-01 6 137018434 137018434 G A MAP3K5 Missense_Mutation p.R300W 0.32 deleterious(0) possibly_damaging(0.708) TCGA-L5-A4OQ-01 6 143092631 143092631 C T HIVEP2 Missense_Mutation p.R1082Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OQ-01 6 143094119 143094119 G A HIVEP2 Missense_Mutation p.P586L 0.18 tolerated(0.13) possibly_damaging(0.572) TCGA-L5-A4OQ-01 6 35217663 35217663 T C SCUBE3 3'UTR 0.37 TCGA-L5-A4OQ-01 6 41119038 41119038 G T TREML1 Missense_Mutation p.P154H 0.27 deleterious(0.05) possibly_damaging(0.847) TCGA-L5-A4OQ-01 6 80409356 80409356 A C SH3BGRL2 3'UTR 0.22 TCGA-L5-A4OQ-01 7 143097099 143097099 C T EPHA1 Silent p.V160V 0.22 TCGA-L5-A4OQ-01 7 1510086 1510086 G A INTS1 3'UTR 0.47 TCGA-L5-A4OQ-01 7 151848559 151848559 T A KMT2C Nonsense_Mutation p.K4212* 0.69 TCGA-L5-A4OQ-01 7 2565992 2565992 C T LFNG Silent p.H312H 0.23 TCGA-L5-A4OQ-01 8 139143853 139143853 A G FAM135B 3'UTR 0.17 TCGA-L5-A4OQ-01 8 48790371 48790373 CAA - PRKDC In_Frame_Del p.L1758del 0.41 TCGA-L5-A4OQ-01 9 126144060 126144060 T G DENND1A Missense_Mutation p.N894T 0.12 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-L5-A4OQ-01 X 101624856 101624856 G A NXF2B Intron 0.21 TCGA-L5-A4OQ-01 X 107802335 107802335 G T COL4A5 Missense_Mutation p.L61F 0.20 unknown(0) TCGA-L5-A4OQ-01 X 151358233 151358233 C A GABRA3 Missense_Mutation p.G371V 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A4OQ-01 X 152091293 152091293 G A ZNF185 Missense_Mutation p.R256Q 0.34 tolerated(0.43) benign(0.002) TCGA-L5-A4OQ-01 X 53559883 53559883 T A HUWE1 3'UTR 0.55 TCGA-L5-A4OR-01 10 117885013 117885013 G A GFRA1 Silent p.L163L 0.30 TCGA-L5-A4OR-01 10 128147765 128147765 G A C10orf90 Missense_Mutation p.P581S 0.65 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 10 133950788 133950788 G A JAKMIP3 Missense_Mutation p.V427M 0.86 deleterious(0.02) possibly_damaging(0.847) TCGA-L5-A4OR-01 10 43882851 43882851 G A HNRNPF Missense_Mutation p.S161L 0.12 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OR-01 10 85993970 85993970 G T LRIT1 Missense_Mutation p.Q252K 0.38 tolerated(0.86) benign(0.049) TCGA-L5-A4OR-01 10 99770906 99770906 G A CRTAC1 Silent p.I71I 0.38 TCGA-L5-A4OR-01 11 1018731 1018732 - TGGCC MUC6 Frame_Shift_Ins p.T1357Rfs*101 0.22 TCGA-L5-A4OR-01 11 102991476 102991476 A T DYNC2H1 Missense_Mutation p.K398I 0.18 benign(0.254) TCGA-L5-A4OR-01 11 20699482 20699482 G A NELL1 Silent p.V20V 0.61 TCGA-L5-A4OR-01 11 4470965 4470965 G T OR52K2 Silent p.L132L 0.58 TCGA-L5-A4OR-01 11 4904056 4904056 C A OR51T1 Silent p.L336L 0.36 TCGA-L5-A4OR-01 11 5172728 5172728 T C OR52A1 Missense_Mutation p.N291S 0.14 deleterious(0) possibly_damaging(0.664) TCGA-L5-A4OR-01 11 5264410 5264410 C A HBG1 3'Flank 0.40 TCGA-L5-A4OR-01 11 6497740 6497740 C G ARFIP2 3'UTR 0.43 TCGA-L5-A4OR-01 11 66297345 66297345 C T BBS1 Silent p.R465R 0.51 TCGA-L5-A4OR-01 11 67075347 67075347 G A SSH3 Silent p.A274A 0.16 TCGA-L5-A4OR-01 11 95826428 95826428 C T MAML2 Missense_Mutation p.G256D 0.15 benign(0.145) TCGA-L5-A4OR-01 12 101774935 101774935 C T UTP20 Silent p.L2534L 0.38 TCGA-L5-A4OR-01 12 115112602 115112602 C T TBX3 Missense_Mutation p.E380K 0.41 tolerated(0.13) benign(0.004) TCGA-L5-A4OR-01 12 123461286 123461286 C T OGFOD2 Missense_Mutation p.A32V 0.50 tolerated(0.72) benign(0.005) TCGA-L5-A4OR-01 12 123682877 123682877 C T MPHOSPH9 Missense_Mutation p.G496S 0.14 tolerated(0.48) benign(0.007) TCGA-L5-A4OR-01 12 125834406 125834406 A G TMEM132B Missense_Mutation p.E154G 0.13 deleterious(0.02) benign(0.008) TCGA-L5-A4OR-01 12 132681475 132681475 G A GALNT9 3'UTR 0.12 TCGA-L5-A4OR-01 12 1742006 1742006 G A WNT5B Missense_Mutation p.R88Q 0.24 tolerated(0.06) benign(0.436) TCGA-L5-A4OR-01 12 40689258 40689258 C A LRRK2 Missense_Mutation p.H970N 0.23 tolerated(0.66) benign(0) TCGA-L5-A4OR-01 12 4411364 4411364 C A CCND2 3'UTR 0.33 TCGA-L5-A4OR-01 12 4700374 4700374 G A DYRK4 Missense_Mutation p.E10K 0.42 deleterious(0.02) benign(0.035) TCGA-L5-A4OR-01 12 52380775 52380775 G A ACVR1B Intron 0.50 TCGA-L5-A4OR-01 12 52710769 52710769 G A KRT83 Silent p.S263S 0.30 TCGA-L5-A4OR-01 12 55423233 55423233 A C NEUROD4 3'UTR 0.31 TCGA-L5-A4OR-01 12 55641873 55641873 T A OR6C74 Missense_Mutation p.L268I 0.53 tolerated_low_confidence(0.42) probably_damaging(0.998) TCGA-L5-A4OR-01 12 56997326 56997326 C T BAZ2A Missense_Mutation p.R1068H 0.42 tolerated(0.05) probably_damaging(0.994) TCGA-L5-A4OR-01 12 57864851 57864851 C T GLI1 Silent p.T776T 0.50 TCGA-L5-A4OR-01 12 663075 663075 C T B4GALNT3 Silent p.N662N 0.63 TCGA-L5-A4OR-01 12 91550915 91550915 G T DCN Missense_Mutation p.Q197K 0.38 tolerated(0.62) benign(0.001) TCGA-L5-A4OR-01 13 114504678 114504678 G A TMEM255B Missense_Mutation p.D188N 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 13 33685942 33685942 C T STARD13 Missense_Mutation p.M860I 0.12 deleterious(0) possibly_damaging(0.769) TCGA-L5-A4OR-01 13 58206674 58206674 G C PCDH17 5'UTR 0.42 TCGA-L5-A4OR-01 13 67799860 67799860 T C PCDH9 Missense_Mutation p.S905G 0.25 tolerated(0.13) benign(0.015) TCGA-L5-A4OR-01 13 77724939 77724939 G A MYCBP2 Missense_Mutation p.P2316L 0.27 probably_damaging(0.996) TCGA-L5-A4OR-01 13 77792007 77792007 C A MYCBP2 Missense_Mutation p.D971Y 0.16 probably_damaging(0.982) TCGA-L5-A4OR-01 13 95055742 95055742 T C GPC6 3'UTR 0.64 TCGA-L5-A4OR-01 14 106387083 106387083 G A KIAA0125 Silent p.T44T 0.08 TCGA-L5-A4OR-01 14 24002107 24002107 C T ZFHX2 Missense_Mutation p.R743Q 0.11 probably_damaging(0.994) TCGA-L5-A4OR-01 14 31647370 31647370 G A HECTD1 Silent p.A77A 0.12 TCGA-L5-A4OR-01 14 65253541 65253541 G T SPTB Missense_Mutation p.Q1048K 0.25 tolerated(0.87) benign(0.002) TCGA-L5-A4OR-01 14 75470393 75470393 G C EIF2B2 Missense_Mutation p.V142L 0.10 tolerated(0.32) benign(0.003) TCGA-L5-A4OR-01 14 77492176 77492176 G A IRF2BPL Missense_Mutation p.R654W 0.57 deleterious(0) unknown(0) TCGA-L5-A4OR-01 15 25924980 25924980 G A ATP10A Silent p.T1336T 0.29 TCGA-L5-A4OR-01 15 29429289 29429289 G A FAM189A1 Missense_Mutation p.P247S 0.35 deleterious(0) probably_damaging(0.968) TCGA-L5-A4OR-01 15 51763434 51763434 A C DMXL2 Missense_Mutation p.Y2460D 0.38 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OR-01 15 64275755 64275755 G A DAPK2 Silent p.T97T 0.12 TCGA-L5-A4OR-01 15 84581902 84581902 C G ADAMTSL3 Missense_Mutation p.R587G 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 15 90026363 90026363 T C RHCG Missense_Mutation p.I153V 0.76 tolerated(0.55) benign(0.042) TCGA-L5-A4OR-01 16 20796322 20796322 T C ACSM3 Silent p.L346L 0.62 TCGA-L5-A4OR-01 16 23226040 23226040 T G SCNN1G Missense_Mutation p.L501V 0.45 tolerated(0.24) possibly_damaging(0.787) TCGA-L5-A4OR-01 16 31129012 31129012 C G KAT8 Missense_Mutation p.Q4E 0.09 tolerated_low_confidence(1) unknown(0) TCGA-L5-A4OR-01 16 5009357 5009357 C A SEC14L5 Silent p.V11V 0.63 TCGA-L5-A4OR-01 17 34236333 34236333 G T AC015849.16 RNA 0.35 TCGA-L5-A4OR-01 17 37431306 37431316 CTTATGGCACC - FBXL20 Frame_Shift_Del p.G245Vfs*28 0.18 TCGA-L5-A4OR-01 17 47917252 47917252 C T TAC4 Silent p.T90T 0.21 TCGA-L5-A4OR-01 17 48278896 48278896 A C COL1A1 5'UTR 0.33 TCGA-L5-A4OR-01 17 74468104 74468104 G A RHBDF2 Missense_Mutation p.L728F 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 17 7578485 7578486 - ATCAAC TP53 In_Frame_Ins p.V147_D148dup 0.40 TCGA-L5-A4OR-01 17 7579377 7579378 - GT TP53 Frame_Shift_Ins p.Q104Tfs*20 0.35 TCGA-L5-A4OR-01 17 7948301 7948301 C - ALOX15B Frame_Shift_Del p.L278Cfs*5 0.33 TCGA-L5-A4OR-01 17 9680523 9680523 C T DHRS7C Silent p.P187P 0.35 TCGA-L5-A4OR-01 18 21330979 21330979 G A LAMA3 Missense_Mutation p.R261H 0.03 benign(0.033) TCGA-L5-A4OR-01 18 48593406 48593406 G T SMAD4 Missense_Mutation p.G386V 0.48 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 18 5145467 5145467 T G C18orf42 3'UTR 0.56 TCGA-L5-A4OR-01 18 627265 627265 A T CLUL1 Missense_Mutation p.S198C 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OR-01 18 641516 641516 C G CLUL1 Missense_Mutation p.T395R 0.11 deleterious(0.05) possibly_damaging(0.899) TCGA-L5-A4OR-01 19 10091481 10091481 C G COL5A3 Splice_Site p.X853_splice 0.43 TCGA-L5-A4OR-01 19 10671911 10671911 G A KRI1 Silent p.D179D 0.45 TCGA-L5-A4OR-01 19 16536019 16536019 C T EPS15L1 Missense_Mutation p.V223I 0.30 deleterious(0.01) possibly_damaging(0.847) TCGA-L5-A4OR-01 19 17405573 17405573 C T ABHD8 Silent p.T281T 0.21 TCGA-L5-A4OR-01 19 2041133 2041133 C G MKNK2 Missense_Mutation p.C339S 0.13 tolerated(0.59) benign(0.001) TCGA-L5-A4OR-01 19 36213516 36213516 G A KMT2B Missense_Mutation p.R873H 0.31 probably_damaging(0.964) TCGA-L5-A4OR-01 19 37211536 37211536 G T ZNF567 Missense_Mutation p.R606I 0.36 deleterious(0.01) benign(0.002) TCGA-L5-A4OR-01 19 37976049 37976049 C A ZNF570 Missense_Mutation p.Q509K 0.32 tolerated(0.08) benign(0.212) TCGA-L5-A4OR-01 19 43523013 43523013 A G PSG11 Silent p.G206G 0.43 TCGA-L5-A4OR-01 19 45314532 45314532 C T BCAM Nonsense_Mutation p.R45* 0.27 TCGA-L5-A4OR-01 19 46498690 46498690 A G CCDC61 5'Flank 0.51 TCGA-L5-A4OR-01 19 50921242 50921242 G A POLD1 3'UTR 0.30 TCGA-L5-A4OR-01 19 51830117 51830117 C T IGLON5 Missense_Mutation p.A204V 0.49 tolerated(0.3) benign(0.09) TCGA-L5-A4OR-01 19 52919173 52919173 A C ZNF528 Missense_Mutation p.E356D 0.20 tolerated(0.2) benign(0.001) TCGA-L5-A4OR-01 19 54973452 54973452 C T LENG9 Missense_Mutation p.G442R 0.21 tolerated(0.1) probably_damaging(0.975) TCGA-L5-A4OR-01 19 5733871 5733871 G A CATSPERD Missense_Mutation p.G94D 0.41 deleterious(0.02) probably_damaging(0.943) TCGA-L5-A4OR-01 19 57643145 57643145 A T USP29 3'UTR 0.06 TCGA-L5-A4OR-01 19 5786509 5786509 G T DUS3L Missense_Mutation p.Q511K 0.17 tolerated(0.23) benign(0.004) TCGA-L5-A4OR-01 19 9048223 9048223 T C MUC16 Silent p.E11136E 0.40 TCGA-L5-A4OR-01 19 9449867 9449867 A C ZNF559 Splice_Site p.X12_splice 0.17 TCGA-L5-A4OR-01 1 109795272 109795272 C T CELSR2 Silent p.G857G 0.13 TCGA-L5-A4OR-01 1 111215785 111215785 C G KCNA3 Silent p.T549T 0.29 TCGA-L5-A4OR-01 1 12835214 12835214 C T PRAMEF12 Silent p.S68S 0.57 TCGA-L5-A4OR-01 1 13001274 13001274 C G PRAMEF6 Missense_Mutation p.D137H 0.07 deleterious(0.04) benign(0.022) TCGA-L5-A4OR-01 1 152883289 152883289 A G IVL Missense_Mutation p.Q339R 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OR-01 1 156642004 156642004 G T NES Missense_Mutation p.S659Y 0.20 deleterious(0.04) probably_damaging(0.987) TCGA-L5-A4OR-01 1 158390306 158390306 G A OR10K2 Silent p.V117V 0.40 TCGA-L5-A4OR-01 1 160124898 160124898 C - ATP1A4 Frame_Shift_Del p.T93Pfs*48 0.27 TCGA-L5-A4OR-01 1 177030356 177030356 T A ASTN1 Missense_Mutation p.Q110L 0.21 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-L5-A4OR-01 1 177030375 177030375 G T ASTN1 Missense_Mutation p.P104T 0.23 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-L5-A4OR-01 1 181058830 181058830 G C IER5 Silent p.G264G 0.25 TCGA-L5-A4OR-01 1 181745356 181745356 A G CACNA1E Silent p.R1753R 0.45 TCGA-L5-A4OR-01 1 185992214 185992214 C G HMCN1 Missense_Mutation p.A1893G 0.26 possibly_damaging(0.51) TCGA-L5-A4OR-01 1 186957860 186957860 A C PLA2G4A 3'UTR 0.36 TCGA-L5-A4OR-01 1 193051321 193051321 C G TROVE2 Silent p.V403V 0.11 TCGA-L5-A4OR-01 1 200089966 200089966 G A NR5A2 Missense_Mutation p.G421R 0.34 deleterious(0.05) benign(0.172) TCGA-L5-A4OR-01 1 203025260 203025260 A C PPFIA4 Silent p.R189R 0.40 TCGA-L5-A4OR-01 1 214171262 214171262 C A PROX1 Missense_Mutation p.Q462K 0.53 tolerated(0.29) benign(0.014) TCGA-L5-A4OR-01 1 229738643 229738643 C A TAF5L Nonsense_Mutation p.E91* 0.17 TCGA-L5-A4OR-01 1 241886718 241886718 G A WDR64 Missense_Mutation p.V382I 0.35 tolerated(1) benign(0.002) TCGA-L5-A4OR-01 1 45504721 45504721 G A ZSWIM5 Missense_Mutation p.T594I 0.31 tolerated(0.18) unknown(0) TCGA-L5-A4OR-01 1 75626778 75626778 G A LHX8 3'UTR 0.48 TCGA-L5-A4OR-01 20 3299048 3299048 C T C20orf194 Splice_Site p.X453_splice 0.49 TCGA-L5-A4OR-01 20 34116541 34116541 G A C20orf173 Silent p.P159P 0.14 TCGA-L5-A4OR-01 20 43251252 43251252 C T ADA Silent p.P274P 0.09 TCGA-L5-A4OR-01 22 26166123 26166123 A G MYO18B Missense_Mutation p.Q520R 0.37 deleterious(0.04) benign(0.132) TCGA-L5-A4OR-01 22 30951613 30951613 G A GAL3ST1 Missense_Mutation p.P200L 0.38 deleterious(0) possibly_damaging(0.777) TCGA-L5-A4OR-01 22 38823567 38823567 C T KCNJ4 Missense_Mutation p.A191T 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OR-01 22 41830587 41830587 G - TOB2 3'UTR 0.35 TCGA-L5-A4OR-01 22 44966415 44966415 C A LINC00207 RNA 0.56 TCGA-L5-A4OR-01 22 45309798 45309798 C T PHF21B Silent p.T245T 0.17 TCGA-L5-A4OR-01 22 51117501 51117501 C A SHANK3 Missense_Mutation p.P219T 0.43 probably_damaging(0.993) TCGA-L5-A4OR-01 2 141130629 141130629 A G LRP1B Silent p.C3572C 0.20 TCGA-L5-A4OR-01 2 162275468 162275468 C T TBR1 Silent p.D345D 0.11 TCGA-L5-A4OR-01 2 168105196 168105196 C T XIRP2 Missense_Mutation p.H2432Y 0.12 benign(0.18) TCGA-L5-A4OR-01 2 179489321 179489321 T A TTN Nonsense_Mutation p.K14896* 0.12 TCGA-L5-A4OR-01 2 179547580 179547580 C G TTN Missense_Mutation p.A10980P 0.28 TCGA-L5-A4OR-01 2 179637875 179637875 C T TTN Missense_Mutation p.A2606T 0.50 TCGA-L5-A4OR-01 2 1890313 1890313 G C MYT1L Silent p.L901L 0.08 TCGA-L5-A4OR-01 2 193059574 193059574 G T TMEFF2 5'UTR 0.46 TCGA-L5-A4OR-01 2 20458106 20458106 G A PUM2 Silent p.A794A 0.32 TCGA-L5-A4OR-01 2 206911274 206911274 G A INO80D Nonsense_Mutation p.Q343* 0.32 TCGA-L5-A4OR-01 2 215823015 215823015 A C ABCA12 Missense_Mutation p.F2035V 0.22 deleterious(0) probably_damaging(0.973) TCGA-L5-A4OR-01 2 215872568 215872568 G A ABCA12 Silent p.S825S 0.23 TCGA-L5-A4OR-01 2 236945291 236945291 G A AGAP1 Missense_Mutation p.A578T 0.27 tolerated(0.21) possibly_damaging(0.853) TCGA-L5-A4OR-01 2 3727512 3727512 G A ALLC Missense_Mutation p.D76N 0.40 tolerated(0.07) probably_damaging(0.929) TCGA-L5-A4OR-01 2 5840731 5840731 C A SOX11 3'UTR 0.22 TCGA-L5-A4OR-01 2 69752196 69752196 C T AAK1 Missense_Mutation p.A342T 0.43 deleterious(0.01) unknown(0) TCGA-L5-A4OR-01 2 73491482 73491482 C T FBXO41 Missense_Mutation p.R577Q 0.35 tolerated(0.11) benign(0.231) TCGA-L5-A4OR-01 2 74746273 74746273 G A DQX1 Nonsense_Mutation p.R631* 0.10 TCGA-L5-A4OR-01 2 77745205 77745205 G T LRRTM4 Intron 0.25 TCGA-L5-A4OR-01 2 80530483 80530483 G A LRRTM1 Silent p.P154P 0.18 TCGA-L5-A4OR-01 2 87017722 87017722 C T CD8A Silent p.Q44Q 0.47 TCGA-L5-A4OR-01 3 133647490 133647490 A C C3orf36 Missense_Mutation p.L53R 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.883) TCGA-L5-A4OR-01 3 134369820 134369820 G A KY 5'UTR 0.40 TCGA-L5-A4OR-01 3 138738705 138738705 T A PRR23B 3'UTR 0.21 TCGA-L5-A4OR-01 3 148562324 148562324 T G CPB1 Missense_Mutation p.F212L 0.58 deleterious(0) possibly_damaging(0.762) TCGA-L5-A4OR-01 3 174577232 174577232 C A NAALADL2 Missense_Mutation p.S12Y 0.16 deleterious_low_confidence(0.02) possibly_damaging(0.459) TCGA-L5-A4OR-01 3 175184904 175184904 C T NAALADL2 Nonsense_Mutation p.R489* 0.18 TCGA-L5-A4OR-01 3 185304241 185304241 C A SENP2 Missense_Mutation p.R14S 0.19 tolerated_low_confidence(0.46) benign(0.223) TCGA-L5-A4OR-01 3 195515381 195515381 G A MUC4 Missense_Mutation p.P1024S 0.35 unknown(0) TCGA-L5-A4OR-01 3 37379178 37379178 A T GOLGA4 Missense_Mutation p.T2132S 0.21 benign(0.076) TCGA-L5-A4OR-01 3 37845392 37845392 G C ITGA9 Missense_Mutation p.G990R 0.51 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 3 38101292 38101292 T C DLEC1 Missense_Mutation p.S208P 0.42 deleterious(0) possibly_damaging(0.786) TCGA-L5-A4OR-01 3 38101297 38101297 A G DLEC1 Silent p.P209P 0.44 TCGA-L5-A4OR-01 3 38645355 38645355 T G SCN5A Missense_Mutation p.T580P 0.07 tolerated(0.14) benign(0.207) TCGA-L5-A4OR-01 3 39230645 39230645 A C XIRP1 Missense_Mutation p.F98V 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 3 48199744 48199744 T G CDC25A 3'UTR 0.50 TCGA-L5-A4OR-01 3 48731811 48731811 A C IP6K2 Intron 0.34 TCGA-L5-A4OR-01 3 49161216 49161216 G A LAMB2 Missense_Mutation p.R1248C 0.14 deleterious(0.01) probably_damaging(0.931) TCGA-L5-A4OR-01 3 53766990 53766990 G A CACNA1D Splice_Site p.X894_splice 0.50 TCGA-L5-A4OR-01 3 56785407 56785414 CATGGGGT - ARHGEF3 Frame_Shift_Del p.D182Afs*26 0.20 TCGA-L5-A4OR-01 3 73433145 73433145 C T PDZRN3 Missense_Mutation p.A858T 0.51 tolerated(0.27) benign(0.001) TCGA-L5-A4OR-01 4 118006215 118006215 G A TRAM1L1 Missense_Mutation p.T112I 0.60 deleterious(0) possibly_damaging(0.811) TCGA-L5-A4OR-01 4 145061904 145061904 C T GYPA 5'UTR 0.48 TCGA-L5-A4OR-01 4 155157812 155157812 G T DCHS2 Missense_Mutation p.N2209K 0.67 tolerated(1) benign(0) TCGA-L5-A4OR-01 4 5754572 5754572 G T EVC Nonsense_Mutation p.E370* 0.15 TCGA-L5-A4OR-01 4 77250093 77250093 G A CCDC158 Silent p.D986D 0.31 TCGA-L5-A4OR-01 5 127514328 127514328 A T SLC12A2 Missense_Mutation p.Q1016L 0.68 deleterious(0.03) benign(0.001) TCGA-L5-A4OR-01 5 140201528 140201528 G A PCDHA5 Silent p.A56A 0.12 TCGA-L5-A4OR-01 5 140250658 140250658 C T PCDHA11 Missense_Mutation p.A657V 0.14 tolerated_low_confidence(0.11) benign(0.165) TCGA-L5-A4OR-01 5 140563423 140563423 G A PCDHB16 Missense_Mutation p.R430K 0.55 deleterious_low_confidence(0.03) benign(0.044) TCGA-L5-A4OR-01 5 148899860 148899860 C T CSNK1A1 Missense_Mutation p.C150Y 0.61 deleterious_low_confidence(0.01) probably_damaging(0.926) TCGA-L5-A4OR-01 5 153035396 153035396 G C GRIA1 Missense_Mutation p.K231N 0.26 tolerated(0.06) benign(0.018) TCGA-L5-A4OR-01 5 170351515 170351515 C T RANBP17 Missense_Mutation p.P477S 0.14 tolerated(1) benign(0) TCGA-L5-A4OR-01 5 175528580 175528580 C T FAM153B Silent p.A143A 0.39 TCGA-L5-A4OR-01 5 19473289 19473289 C T CDH18 3'UTR 0.30 TCGA-L5-A4OR-01 5 19571717 19571717 T C CDH18 Silent p.Q408Q 0.27 TCGA-L5-A4OR-01 5 33576648 33576648 T G ADAMTS12 Missense_Mutation p.E1161D 0.22 tolerated(0.14) benign(0.025) TCGA-L5-A4OR-01 5 43289821 43289821 G A HMGCS1 3'UTR 0.23 TCGA-L5-A4OR-01 5 50091052 50091052 C G PARP8 Missense_Mutation p.S410C 0.16 deleterious_low_confidence(0) possibly_damaging(0.887) TCGA-L5-A4OR-01 5 5034586 5034586 T C LINC01020 RNA 0.60 TCGA-L5-A4OR-01 5 74990572 74990572 G A POC5 Missense_Mutation p.H200Y 0.80 deleterious(0.02) benign(0.021) TCGA-L5-A4OR-01 5 76707514 76707514 G C PDE8B Missense_Mutation p.R515T 0.57 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A4OR-01 5 88178941 88178941 C T MEF2C Intron 0.36 TCGA-L5-A4OR-01 6 100841708 100841708 T G SIM1 Missense_Mutation p.S409R 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OR-01 6 136901436 136901436 G C MAP3K5 Intron 0.25 TCGA-L5-A4OR-01 6 143095791 143095791 C T HIVEP2 Missense_Mutation p.E29K 0.14 deleterious(0) probably_damaging(0.917) TCGA-L5-A4OR-01 6 160888673 160888673 C T LPAL2 RNA 0.27 TCGA-L5-A4OR-01 6 161015105 161015105 C T LPA Missense_Mutation p.D1172N 0.31 tolerated(1) benign(0.008) TCGA-L5-A4OR-01 6 27278728 27278728 A G POM121L2 Silent p.L408L 0.33 TCGA-L5-A4OR-01 6 29080410 29080410 T G OR2J3 Missense_Mutation p.L248R 0.19 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OR-01 6 43400126 43400126 G A ABCC10 Silent p.L136L 0.36 TCGA-L5-A4OR-01 6 73111022 73111022 C T RIMS1 3'Flank 0.15 TCGA-L5-A4OR-01 6 93951166 93951166 C G EPHA7 3'UTR 0.15 TCGA-L5-A4OR-01 6 93951199 93951199 T C EPHA7 3'UTR 0.23 TCGA-L5-A4OR-01 6 97245961 97245961 G T GPR63 3'UTR 0.27 TCGA-L5-A4OR-01 7 103338429 103338429 C A RELN Silent p.V338V 0.38 TCGA-L5-A4OR-01 7 126882955 126882955 T C GRM8 Missense_Mutation p.I102V 0.43 tolerated(0.07) probably_damaging(0.956) TCGA-L5-A4OR-01 7 35707194 35707194 G A HERPUD2 Missense_Mutation p.S115L 0.11 tolerated(0.16) benign(0.001) TCGA-L5-A4OR-01 7 36657928 36657928 A G AOAH Silent p.V242V 0.39 TCGA-L5-A4OR-01 7 49815635 49815635 G A VWC2 Missense_Mutation p.V202I 0.43 tolerated(0.15) benign(0.018) TCGA-L5-A4OR-01 7 5330775 5330775 A G SLC29A4 Missense_Mutation p.M108V 0.13 deleterious(0) possibly_damaging(0.507) TCGA-L5-A4OR-01 7 65216129 65216129 A G SNORA22 5'Flank 0.52 TCGA-L5-A4OR-01 7 87810916 87810916 G T ADAM22 Missense_Mutation p.W835C 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OR-01 7 99688276 99688276 A G COPS6 Missense_Mutation p.D162G 0.16 deleterious(0) benign(0.439) TCGA-L5-A4OR-01 8 105264288 105264288 A G RIMS2 3'Flank 0.23 TCGA-L5-A4OR-01 8 113364724 113364724 C A CSMD3 Missense_Mutation p.S2059I 0.15 deleterious(0.01) benign(0.088) TCGA-L5-A4OR-01 8 116599552 116599552 T G TRPS1 Missense_Mutation p.K792N 0.38 deleterious_low_confidence(0) possibly_damaging(0.88) TCGA-L5-A4OR-01 8 11995298 11995298 G C USP17L2 Silent p.V324V 0.11 TCGA-L5-A4OR-01 8 11996103 11996103 G T USP17L2 Missense_Mutation p.A56D 0.24 tolerated(0.05) benign(0.028) TCGA-L5-A4OR-01 8 133152397 133152397 T G KCNQ3 Missense_Mutation p.E498D 0.48 tolerated(0.69) probably_damaging(0.999) TCGA-L5-A4OR-01 8 134063088 134063088 C T SLA Missense_Mutation p.R85Q 0.34 tolerated(0.19) benign(0.018) TCGA-L5-A4OR-01 8 135614670 135614670 G A ZFAT Missense_Mutation p.P431L 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A4OR-01 8 139774711 139774711 T G COL22A1 Splice_Site p.X602_splice 0.27 TCGA-L5-A4OR-01 8 145624995 145624995 G A CPSF1 Missense_Mutation p.R409C 0.27 tolerated(0.07) possibly_damaging(0.657) TCGA-L5-A4OR-01 8 67342324 67342324 G - RRS1 Frame_Shift_Del p.G321Afs*22 0.48 TCGA-L5-A4OR-01 8 67748200 67748200 G A SGK3 Missense_Mutation p.R211H 0.43 deleterious(0) probably_damaging(0.93) TCGA-L5-A4OR-01 8 70571058 70571058 A C SULF1 3'UTR 0.15 TCGA-L5-A4OR-01 8 72129031 72129031 C T EYA1 Missense_Mutation p.C419Y 0.45 deleterious(0) probably_damaging(0.977) TCGA-L5-A4OR-01 8 75765821 75765821 T C PI15 3'UTR 0.38 TCGA-L5-A4OR-01 8 8235035 8235035 G A SGK223 Missense_Mutation p.S295F 0.28 benign(0.04) TCGA-L5-A4OR-01 9 133499004 133499004 G A FUBP3 Missense_Mutation p.G294E 0.16 tolerated(0.09) possibly_damaging(0.844) TCGA-L5-A4OR-01 9 135209997 135209997 T A SETX Missense_Mutation p.D279V 0.33 tolerated(0.07) possibly_damaging(0.873) TCGA-L5-A4OR-01 9 136217908 136217909 - A RPL7A Frame_Shift_Ins p.N227Kfs*2 0.33 TCGA-L5-A4OR-01 9 137321027 137321027 C T RXRA Silent p.T328T 0.17 TCGA-L5-A4OR-01 9 14851562 14851562 G A FREM1 Missense_Mutation p.P291L 0.37 deleterious(0) probably_damaging(0.98) TCGA-L5-A4OR-01 9 36170194 36170194 C T CCIN Missense_Mutation p.T232M 0.35 tolerated(0.25) benign(0.218) TCGA-L5-A4OR-01 9 39288005 39288005 A C CNTNAP3 Silent p.T19T 0.18 TCGA-L5-A4OR-01 9 41963837 41963837 A T RP11-204M4.2 Splice_Site 0.07 TCGA-L5-A4OR-01 9 6602180 6602180 G A GLDC Missense_Mutation p.R362C 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A4OR-01 9 69380374 69380374 G A CR769776.1 Silent p.P19P 0.07 TCGA-L5-A4OR-01 9 73457998 73457998 T G TRPM3 Missense_Mutation p.K241T 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-L5-A4OR-01 9 8317505 8317505 T A PTPRD 3'UTR 0.29 TCGA-L5-A4OR-01 X 49082518 49082518 G A CACNA1F Nonsense_Mutation p.R513* 0.90 TCGA-L5-A4OR-01 X 54949885 54949885 G T TRO Missense_Mutation p.S307I 0.81 tolerated(0.08) unknown(0) TCGA-L5-A4OR-01 X 90690649 90690649 T G PABPC5 Missense_Mutation p.L25V 0.88 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OR-01 X 9912763 9912763 A T SHROOM2 Missense_Mutation p.N1465I 0.85 deleterious(0) probably_damaging(0.977) TCGA-L5-A4OS-01 10 106074541 106074541 G A ITPRIP Silent p.T423T 0.12 TCGA-L5-A4OS-01 10 16945979 16945979 T C CUBN Missense_Mutation p.K2683R 0.10 tolerated(0.33) benign(0.004) TCGA-L5-A4OS-01 10 44112612 44112612 G A ZNF485 Missense_Mutation p.R374K 0.14 tolerated(0.1) benign(0.007) TCGA-L5-A4OS-01 10 62629856 62629856 C G RHOBTB1 3'UTR 0.23 TCGA-L5-A4OS-01 10 78704644 78704644 T G KCNMA1 Missense_Mutation p.Q913P 0.12 tolerated(0.41) possibly_damaging(0.681) TCGA-L5-A4OS-01 11 117988062 117988062 C T TMPRSS4 Missense_Mutation p.H399Y 0.38 deleterious(0) benign(0.016) TCGA-L5-A4OS-01 11 1216458 1216458 G A MUC5AC RNA 0.23 TCGA-L5-A4OS-01 11 2426270 2426270 G C TRPM5 Missense_Mutation p.S1132C 0.08 deleterious(0.01) possibly_damaging(0.724) TCGA-L5-A4OS-01 11 26586795 26586795 T A MUC15 Missense_Mutation p.Y231F 0.13 deleterious(0.04) possibly_damaging(0.801) TCGA-L5-A4OS-01 11 32635220 32635220 C T CCDC73 Missense_Mutation p.G882R 0.10 deleterious(0) probably_damaging(0.985) TCGA-L5-A4OS-01 11 46407375 46407375 G A CHRM4 Missense_Mutation p.L245F 0.10 tolerated(0.6) benign(0.033) TCGA-L5-A4OS-01 11 56113842 56113842 T G OR8K1 Missense_Mutation p.F110V 0.13 deleterious_low_confidence(0.01) benign(0.301) TCGA-L5-A4OS-01 11 59132150 59132150 C A OR5AN1 Nonsense_Mutation p.C73* 0.23 TCGA-L5-A4OS-01 11 62557554 62557554 C G TMEM179B 3'UTR 0.11 TCGA-L5-A4OS-01 11 67787219 67787219 G C ALDH3B1 Missense_Mutation p.E171D 0.17 deleterious(0.02) benign(0.015) TCGA-L5-A4OS-01 11 6789525 6789525 G C OR2AG2 Missense_Mutation p.L222V 0.12 deleterious(0.01) probably_damaging(0.99) TCGA-L5-A4OS-01 11 86662616 86662616 G A FZD4 Silent p.P394P 0.28 TCGA-L5-A4OS-01 12 123892743 123892743 T A SETD8 3'UTR 0.23 TCGA-L5-A4OS-01 12 48361947 48361947 A G TMEM106C Missense_Mutation p.M230V 0.19 tolerated(1) benign(0.002) TCGA-L5-A4OS-01 12 50571452 50571452 C T LIMA1 Missense_Mutation p.E560K 0.11 deleterious(0) possibly_damaging(0.873) TCGA-L5-A4OS-01 12 52695793 52695793 C G KRT86 Silent p.P31P 0.15 TCGA-L5-A4OS-01 12 58022875 58022875 G A B4GALNT1 Missense_Mutation p.P256L 0.14 deleterious(0.03) benign(0.058) TCGA-L5-A4OS-01 13 25442743 25442743 G C RNF17 Missense_Mutation p.L1389F 0.18 deleterious(0.03) probably_damaging(0.969) TCGA-L5-A4OS-01 13 26343263 26343263 G A ATP8A2 Missense_Mutation p.G822S 0.16 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OS-01 13 31035766 31035766 C G HMGB1 Intron 0.33 TCGA-L5-A4OS-01 13 53196361 53196361 C T HNRNPA1L2 5'UTR 0.23 TCGA-L5-A4OS-01 14 103433438 103433438 C T CDC42BPB Missense_Mutation p.A806T 0.12 tolerated(0.34) benign(0.007) TCGA-L5-A4OS-01 14 105360904 105360904 C T CEP170B Missense_Mutation p.R1466W 0.08 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OS-01 15 22368953 22368953 C T OR4M2 Silent p.I126I 0.06 TCGA-L5-A4OS-01 15 45392391 45392391 G A DUOX2 Missense_Mutation p.A1014V 0.16 tolerated(0.09) probably_damaging(0.997) TCGA-L5-A4OS-01 15 48779545 48779545 C A FBN1 Missense_Mutation p.G1143C 0.24 probably_damaging(1) TCGA-L5-A4OS-01 15 73029250 73029250 C G BBS4 Missense_Mutation p.Q466E 0.08 deleterious_low_confidence(0.01) benign(0.056) TCGA-L5-A4OS-01 16 19234436 19234436 G C SYT17 Missense_Mutation p.D341H 0.18 tolerated(0.55) possibly_damaging(0.771) TCGA-L5-A4OS-01 16 56878425 56878425 A G NUP93 Silent p.Q788Q 0.23 TCGA-L5-A4OS-01 16 56899125 56899125 C T SLC12A3 5'UTR 0.17 TCGA-L5-A4OS-01 17 28548752 28548752 A G SLC6A4 Silent p.H75H 0.26 TCGA-L5-A4OS-01 17 30696347 30696347 C T ZNF207 Missense_Mutation p.R400C 0.20 tolerated(0.18) probably_damaging(0.988) TCGA-L5-A4OS-01 17 37885619 37885619 C G MIEN1 3'UTR 0.07 TCGA-L5-A4OS-01 17 3828295 3828295 G A ATP2A3 3'Flank 0.50 TCGA-L5-A4OS-01 17 39092782 39092782 G C KRT23 Missense_Mutation p.P25R 0.15 tolerated(0.46) benign(0.01) TCGA-L5-A4OS-01 17 40142298 40142298 C T DNAJC7 Missense_Mutation p.A195T 0.12 deleterious(0) probably_damaging(0.96) TCGA-L5-A4OS-01 17 4441120 4441120 C G SPNS2 3'UTR 0.16 TCGA-L5-A4OS-01 17 72767990 72767990 G A NAT9 Missense_Mutation p.T166M 0.08 tolerated(0.14) benign(0.001) TCGA-L5-A4OS-01 17 7317709 7317709 C T NLGN2 Silent p.G185G 0.10 TCGA-L5-A4OS-01 17 7358623 7358623 G A CHRNB1 Silent p.P355P 0.23 TCGA-L5-A4OS-01 17 73886699 73886699 A C TRIM65 3'UTR 0.17 TCGA-L5-A4OS-01 17 7415274 7415274 C T POLR2A Nonsense_Mutation p.R1416* 0.18 TCGA-L5-A4OS-01 17 76120758 76120758 G C TMC6 Silent p.L246L 0.10 TCGA-L5-A4OS-01 18 32470207 32470207 G A DTNA Intron 0.09 TCGA-L5-A4OS-01 18 63430163 63430163 C A CDH7 Missense_Mutation p.L29I 0.15 tolerated(0.43) benign(0.001) TCGA-L5-A4OS-01 19 12243540 12243540 G A ZNF20 Silent p.A487A 0.15 TCGA-L5-A4OS-01 19 21607960 21607960 A T ZNF493 3'UTR 0.18 TCGA-L5-A4OS-01 19 53056935 53056935 G C ZNF808 Missense_Mutation p.D256H 0.07 deleterious(0) probably_damaging(0.975) TCGA-L5-A4OS-01 19 55758504 55758504 G A PPP6R1 Intron 0.17 TCGA-L5-A4OS-01 1 117127484 117127484 G A IGSF3 Silent p.H897H 0.15 TCGA-L5-A4OS-01 1 14149782 14149782 G A PRDM2 3'UTR 0.05 TCGA-L5-A4OS-01 1 149783307 149783307 C G HIST2H2BF Intron 0.21 TCGA-L5-A4OS-01 1 153746308 153746308 C G INTS3 3'UTR 0.10 TCGA-L5-A4OS-01 1 158687131 158687131 A G OR6K3 Silent p.L259L 0.22 TCGA-L5-A4OS-01 1 32165447 32165447 C T COL16A1 Missense_Mutation p.R78H 0.21 unknown(0) TCGA-L5-A4OS-01 1 44063687 44063687 C T PTPRF Silent p.P694P 0.19 TCGA-L5-A4OS-01 1 76333264 76333264 T C MSH4 Silent p.D432D 0.09 TCGA-L5-A4OS-01 1 79411960 79411960 T G ELTD1 Silent p.I108I 0.19 TCGA-L5-A4OS-01 1 8421875 8421876 - CCACC RERE Frame_Shift_Ins p.A655Gfs*177 0.32 TCGA-L5-A4OS-01 20 21687380 21687380 C T PAX1 Silent p.R197R 0.11 TCGA-L5-A4OS-01 20 25472115 25472115 C G NINL Missense_Mutation p.E453Q 0.12 deleterious(0) benign(0.043) TCGA-L5-A4OS-01 20 32005636 32005636 C T SNTA1 Missense_Mutation p.R197Q 0.59 tolerated(0.56) benign(0.003) TCGA-L5-A4OS-01 20 3208438 3208438 G A SLC4A11 Missense_Mutation p.P918S 0.28 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-L5-A4OS-01 20 41385155 41385155 A G PTPRT Missense_Mutation p.I269T 0.08 tolerated(1) benign(0.12) TCGA-L5-A4OS-01 20 43142627 43142627 T G SERINC3 Missense_Mutation p.S32R 0.09 tolerated(0.07) benign(0.023) TCGA-L5-A4OS-01 20 9389320 9389320 A T PLCB4 Silent p.S598S 0.25 TCGA-L5-A4OS-01 22 29651307 29651307 C A EMID1 Intron 0.07 TCGA-L5-A4OS-01 22 37769432 37769432 G A ELFN2 Silent p.L715L 0.18 TCGA-L5-A4OS-01 22 50960627 50960627 T C NCAPH2 Missense_Mutation p.W394R 0.08 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OS-01 2 10192695 10192695 G A KLF11 3'UTR 0.17 TCGA-L5-A4OS-01 2 136393551 136393551 G C R3HDM1 Missense_Mutation p.D264H 0.07 deleterious(0) probably_damaging(1) TCGA-L5-A4OS-01 2 166167085 166167085 A T SCN2A Missense_Mutation p.D317V 0.07 deleterious(0.03) benign(0.062) TCGA-L5-A4OS-01 2 200136381 200136381 G T SATB2 3'UTR 0.22 TCGA-L5-A4OS-01 2 224463860 224463860 G C SCG2 Silent p.V47V 0.14 TCGA-L5-A4OS-01 2 69351771 69351771 A G ANTXR1 Missense_Mutation p.H316R 0.18 tolerated(0.15) benign(0.008) TCGA-L5-A4OS-01 2 71014835 71014835 C T FIGLA Silent p.A110A 0.11 TCGA-L5-A4OS-01 2 98349436 98349436 G A ZAP70 Silent p.A218A 0.22 TCGA-L5-A4OS-01 3 113125833 113125833 G A WDR52 Nonsense_Mutation p.R316* 0.09 TCGA-L5-A4OS-01 3 119120938 119120938 G A ARHGAP31 Missense_Mutation p.A447T 0.09 deleterious(0.01) possibly_damaging(0.886) TCGA-L5-A4OS-01 3 134881021 134881021 C T EPHB1 Silent p.D528D 0.17 TCGA-L5-A4OS-01 3 179069813 179069813 T A MFN1 Missense_Mutation p.F80I 0.13 deleterious(0) possibly_damaging(0.834) TCGA-L5-A4OS-01 3 179069816 179069816 T G MFN1 Missense_Mutation p.F81V 0.14 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OS-01 3 179107819 179107819 G T MFN1 Silent p.L680L 0.16 TCGA-L5-A4OS-01 3 186769080 186769080 C A ST6GAL1 Silent p.A217A 0.07 TCGA-L5-A4OS-01 3 195242197 195242197 C G PPP1R2 3'UTR 0.13 TCGA-L5-A4OS-01 3 197409436 197409436 G A KIAA0226 Silent p.H677H 0.04 TCGA-L5-A4OS-01 3 197511004 197511004 C G FYTTD1 3'UTR 0.14 TCGA-L5-A4OS-01 3 38603969 38603969 C G SCN5A Missense_Mutation p.K1300N 0.11 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OS-01 3 47628081 47628081 T C SMARCC1 3'UTR 0.17 TCGA-L5-A4OS-01 3 48606262 48606262 C T COL7A1 Silent p.K2571K 0.17 TCGA-L5-A4OS-01 3 48999099 48999099 G C ARIH2 Missense_Mutation p.E104Q 0.09 tolerated(0.37) benign(0.005) TCGA-L5-A4OS-01 4 79345576 79345576 T C FRAS1 Splice_Site p.X1571_splice 0.26 TCGA-L5-A4OS-01 4 9784946 9784946 G A DRD5 Silent p.E431E 0.16 TCGA-L5-A4OS-01 5 112389471 112389471 C T MCC Missense_Mutation p.R800K 0.11 tolerated(0.59) probably_damaging(0.937) TCGA-L5-A4OS-01 5 133473773 133473773 C T TCF7 Silent p.H155H 0.10 TCGA-L5-A4OS-01 5 172396449 172396449 C T RPL26L1 Missense_Mutation p.R115W 0.09 deleterious(0.03) benign(0.04) TCGA-L5-A4OS-01 5 179663151 179663151 G T MAPK9 3'UTR 0.13 TCGA-L5-A4OS-01 5 38502838 38502838 G C LIFR Missense_Mutation p.P501A 0.07 tolerated(0.09) probably_damaging(0.998) TCGA-L5-A4OS-01 5 68809798 68809798 C A OCLN Missense_Mutation p.F251L 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A4OS-01 5 80628300 80628300 C A ACOT12 Missense_Mutation p.D463Y 0.15 deleterious(0.02) possibly_damaging(0.83) TCGA-L5-A4OS-01 5 95249513 95249513 C T ELL2 Missense_Mutation p.R148Q 0.15 deleterious(0.03) probably_damaging(0.987) TCGA-L5-A4OS-01 6 132022418 132022418 C T OR2A4 Missense_Mutation p.G42R 0.07 deleterious(0.03) possibly_damaging(0.516) TCGA-L5-A4OS-01 6 149847891 149847891 C A PPIL4 Missense_Mutation p.D234Y 0.07 deleterious(0) probably_damaging(0.977) TCGA-L5-A4OS-01 6 152472809 152472809 C T SYNE1 Missense_Mutation p.R8110H 0.09 probably_damaging(0.998) TCGA-L5-A4OS-01 6 170103922 170103922 G T C6orf120 3'UTR 0.24 TCGA-L5-A4OS-01 6 31797856 31797856 G C HSPA1B 3'UTR 0.06 TCGA-L5-A4OS-01 6 31912622 31912622 C A CFB Missense_Mutation p.P521H 0.26 deleterious(0) probably_damaging(0.986) TCGA-L5-A4OS-01 6 35773299 35773299 C A LHFPL5 5'UTR 0.06 TCGA-L5-A4OS-01 6 40399901 40399901 G A LRFN2 Missense_Mutation p.P318S 0.06 deleterious(0) probably_damaging(1) TCGA-L5-A4OS-01 6 7373600 7373600 G A CAGE1 Silent p.F484F 0.40 TCGA-L5-A4OS-01 6 96655486 96655486 A C FUT9 3'UTR 0.10 TCGA-L5-A4OS-01 6 96663186 96663186 C T FUT9 3'UTR 0.13 TCGA-L5-A4OS-01 7 120389475 120389476 - A KCND2 3'UTR 0.21 TCGA-L5-A4OS-01 7 147844591 147844591 G C CNTNAP2 Missense_Mutation p.E855Q 0.11 tolerated(0.14) possibly_damaging(0.556) TCGA-L5-A4OS-01 7 150554615 150554615 C G AOC1 Missense_Mutation p.Q353E 0.23 deleterious(0) probably_damaging(0.963) TCGA-L5-A4OS-01 7 26240331 26240331 G A HNRNPA2B1 5'UTR 0.24 TCGA-L5-A4OS-01 7 97482391 97482391 T C ASNS Missense_Mutation p.Q486R 0.23 tolerated(0.07) benign(0.016) TCGA-L5-A4OS-01 7 98611622 98611622 C G TRRAP 3'Flank 0.15 TCGA-L5-A4OS-01 7 98994267 98994267 C T PDAP1 3'UTR 0.14 TCGA-L5-A4OS-01 7 99506320 99506320 G A TRIM4 Missense_Mutation p.T228M 0.08 deleterious(0.05) benign(0.019) TCGA-L5-A4OS-01 7 99917283 99917283 G A SPDYE3 Missense_Mutation p.R481H 0.36 tolerated_low_confidence(0.09) benign(0.014) TCGA-L5-A4OS-01 8 107781944 107781944 G A ABRA Missense_Mutation p.R159W 0.21 deleterious(0.02) probably_damaging(0.977) TCGA-L5-A4OS-01 8 116631590 116631590 G A TRPS1 Silent p.Y245Y 0.17 TCGA-L5-A4OS-01 8 124266852 124266852 T A ZHX1 Silent p.A445A 0.28 TCGA-L5-A4OS-01 8 1651574 1651574 G A DLGAP2 3'UTR 0.11 TCGA-L5-A4OS-01 8 24384344 24384344 T A ADAM7 3'UTR 0.17 TCGA-L5-A4OS-01 8 25279131 25279131 C T GNRH1 Silent p.T65T 0.24 TCGA-L5-A4OS-01 8 27398991 27398991 G A EPHX2 Missense_Mutation p.G461S 0.07 tolerated(0.06) probably_damaging(0.994) TCGA-L5-A4OS-01 8 39007314 39007314 A T ADAM32 Missense_Mutation p.Q94L 0.18 deleterious(0.01) possibly_damaging(0.744) TCGA-L5-A4OS-01 8 70405116 70405116 C A SULF1 Intron 0.38 TCGA-L5-A4OS-01 9 101784427 101784427 C T COL15A1 Missense_Mutation p.P586S 0.23 tolerated(0.06) benign(0.001) TCGA-L5-A4OS-01 9 111705299 111705299 C G CTNNAL1 Missense_Mutation p.R694T 0.13 deleterious(0) possibly_damaging(0.816) TCGA-L5-A4OS-01 9 115926352 115926352 G C SLC31A2 3'UTR 0.13 TCGA-L5-A4OS-01 9 123667461 123667461 C T TRAF1 Missense_Mutation p.R363Q 0.18 deleterious(0) probably_damaging(0.959) TCGA-L5-A4OS-01 9 131337616 131337616 C G SPTAN1 Missense_Mutation p.L215V 0.12 deleterious(0.02) probably_damaging(0.97) TCGA-L5-A4OS-01 9 140070157 140070157 C A ANAPC2 Intron 0.11 TCGA-L5-A4OS-01 9 39103809 39103809 G C CNTNAP3 Missense_Mutation p.T823S 0.09 deleterious(0.04) probably_damaging(0.951) TCGA-L5-A4OS-01 X 155171905 155171905 T - VAMP7 3'UTR 0.20 TCGA-L5-A4OS-01 X 7811215 7811215 C T VCX 5'UTR 0.05 TCGA-L5-A4OT-01 10 106982910 106982910 T G SORCS3 Missense_Mutation p.V924G 0.16 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OT-01 10 108335364 108335364 T G SORCS1 3'Flank 0.46 TCGA-L5-A4OT-01 10 118896157 118896157 G T VAX1 Silent p.S85S 0.38 TCGA-L5-A4OT-01 10 125521388 125521388 T G CPXM2 Missense_Mutation p.S593R 0.22 deleterious(0.03) benign(0.134) TCGA-L5-A4OT-01 10 128974387 128974387 G A FAM196A Silent p.P91P 0.20 TCGA-L5-A4OT-01 10 131676100 131676100 A C EBF3 Missense_Mutation p.F190V 0.21 tolerated(0.05) probably_damaging(0.969) TCGA-L5-A4OT-01 10 134015592 134015592 A C DPYSL4 Missense_Mutation p.K418T 0.27 deleterious(0.02) benign(0.002) TCGA-L5-A4OT-01 10 16970293 16970293 T G CUBN Missense_Mutation p.N2045T 0.18 tolerated(0.13) benign(0.098) TCGA-L5-A4OT-01 10 17277328 17277328 A C VIM Missense_Mutation p.K390T 0.21 deleterious(0) probably_damaging(0.927) TCGA-L5-A4OT-01 10 42833305 42833305 T G RP11-313J2.1 RNA 0.20 TCGA-L5-A4OT-01 10 42982519 42982519 A T LINC00839 RNA 0.47 TCGA-L5-A4OT-01 10 51465248 51465248 G A AGAP7 Missense_Mutation p.T403M 0.15 tolerated(0.11) benign(0.125) TCGA-L5-A4OT-01 10 5805122 5805122 C T FAM208B 3'UTR 0.27 TCGA-L5-A4OT-01 10 75185808 75185808 A C MSS51 Missense_Mutation p.L277R 0.56 tolerated(0.39) probably_damaging(0.982) TCGA-L5-A4OT-01 10 78771794 78771794 A C KCNMA1 Missense_Mutation p.F675V 0.14 deleterious(0.02) benign(0.02) TCGA-L5-A4OT-01 10 81680656 81680656 A G MBL1P RNA 0.45 TCGA-L5-A4OT-01 10 87406943 87406943 G A GRID1 Intron 0.23 TCGA-L5-A4OT-01 11 103909832 103909832 A C DDI1 3'UTR 0.26 TCGA-L5-A4OT-01 11 107536092 107536092 G A ELMOD1 3'UTR 0.31 TCGA-L5-A4OT-01 11 10786207 10786207 C T CTR9 Missense_Mutation p.A509V 0.25 tolerated(0.23) benign(0.37) TCGA-L5-A4OT-01 11 114112974 114112974 G A ZBTB16 Silent p.A513A 0.26 TCGA-L5-A4OT-01 11 118770650 118770650 G C BCL9L Missense_Mutation p.P1128A 0.08 benign(0.001) TCGA-L5-A4OT-01 11 121028665 121028665 A C TECTA Missense_Mutation p.N1474T 0.25 tolerated(0.14) benign(0.004) TCGA-L5-A4OT-01 11 123810724 123810724 T G OR4D5 Missense_Mutation p.L134R 0.15 deleterious(0.01) benign(0.424) TCGA-L5-A4OT-01 11 124189450 124189450 A C OR8D2 Missense_Mutation p.L215R 0.16 deleterious(0) possibly_damaging(0.828) TCGA-L5-A4OT-01 11 124189480 124189480 A C OR8D2 Missense_Mutation p.V205G 0.24 deleterious(0) possibly_damaging(0.761) TCGA-L5-A4OT-01 11 124190008 124190008 A G OR8D2 Missense_Mutation p.L29P 0.36 deleterious(0) possibly_damaging(0.603) TCGA-L5-A4OT-01 11 27384771 27384781 CGCGGCGGGGA - CCDC34 5'UTR 0.42 TCGA-L5-A4OT-01 11 2924611 2924611 G A SLC22A18 Silent p.R12R 0.29 TCGA-L5-A4OT-01 11 30930511 30930511 T G DCDC1 Missense_Mutation p.E1300D 0.20 tolerated(0.41) benign(0.388) TCGA-L5-A4OT-01 11 44074968 44074968 C T ACCSL Nonsense_Mutation p.R321* 0.25 TCGA-L5-A4OT-01 11 4703860 4703860 A C OR51E2 Missense_Mutation p.F28V 0.26 tolerated(0.08) benign(0.22) TCGA-L5-A4OT-01 11 4929263 4929263 A T OR51A7 Nonsense_Mutation p.K222* 0.29 TCGA-L5-A4OT-01 11 5461803 5461803 G C OR51I1 Silent p.A314A 0.15 TCGA-L5-A4OT-01 11 55322161 55322161 T C OR4C15 Missense_Mutation p.S127P 0.24 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-L5-A4OT-01 11 5537319 5537319 G A UBQLNL Missense_Mutation p.T118M 0.27 deleterious(0.03) benign(0.185) TCGA-L5-A4OT-01 11 55433297 55433297 A G OR4C6 Missense_Mutation p.I219V 0.11 deleterious_low_confidence(0) possibly_damaging(0.812) TCGA-L5-A4OT-01 11 55579353 55579353 T G OR5L1 Silent p.S137S 0.27 TCGA-L5-A4OT-01 11 55999981 55999981 A C OR5T2 Silent p.S227S 0.49 TCGA-L5-A4OT-01 11 56468458 56468458 T C OR9G1 Missense_Mutation p.Y199H 0.18 tolerated(0.07) benign(0.114) TCGA-L5-A4OT-01 11 5809914 5809914 A C OR52N1 Missense_Mutation p.F45V 0.13 tolerated(0.49) benign(0.044) TCGA-L5-A4OT-01 11 5809978 5809978 T G OR52N1 Missense_Mutation p.E23D 0.39 deleterious(0.01) benign(0.144) TCGA-L5-A4OT-01 11 611900 611900 C T PHRF1 3'UTR 0.26 TCGA-L5-A4OT-01 11 6741449 6741449 A C GVINP1 RNA 0.40 TCGA-L5-A4OT-01 11 7064119 7064119 C G NLRP14 Missense_Mutation p.L288V 0.18 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OT-01 11 83169331 83169331 T G DLG2 3'UTR 0.06 TCGA-L5-A4OT-01 11 89060012 89060012 T A NOX4 Missense_Mutation p.N550I 0.12 deleterious(0.01) benign(0.278) TCGA-L5-A4OT-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.27 tolerated(0.19) benign(0.01) TCGA-L5-A4OT-01 12 100452004 100452004 C T UHRF1BP1L Silent p.S1017S 0.42 TCGA-L5-A4OT-01 12 102173983 102173983 T C GNPTAB Missense_Mutation p.T240A 0.09 tolerated(0.06) possibly_damaging(0.614) TCGA-L5-A4OT-01 12 102590397 102590397 T G PMCH 3'UTR 0.66 TCGA-L5-A4OT-01 12 106460524 106460524 A T NUAK1 3'UTR 0.64 TCGA-L5-A4OT-01 12 112622687 112622687 G T HECTD4 Silent p.L3215L 0.31 TCGA-L5-A4OT-01 12 117993038 117993038 T G KSR2 Missense_Mutation p.K485T 0.68 deleterious(0.01) possibly_damaging(0.549) TCGA-L5-A4OT-01 12 133257759 133257759 C G POLE Missense_Mutation p.G57R 0.24 tolerated(0.55) benign(0.002) TCGA-L5-A4OT-01 12 133804486 133804486 T G ANHX Missense_Mutation p.N142T 0.13 tolerated(0.08) benign(0.055) TCGA-L5-A4OT-01 12 22013960 22013960 A C ABCC9 Missense_Mutation p.L790R 0.05 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OT-01 12 32729381 32729381 C T FGD4 Silent p.G30G 0.62 TCGA-L5-A4OT-01 12 40921906 40921906 A C MUC19 Intron 0.18 TCGA-L5-A4OT-01 12 43944806 43944806 T G ADAMTS20 Missense_Mutation p.D120A 0.06 tolerated(0.41) benign(0.026) TCGA-L5-A4OT-01 12 51142234 51142234 C T DIP2B 3'UTR 0.57 TCGA-L5-A4OT-01 12 51589790 51589790 C T POU6F1 Missense_Mutation p.R71Q 0.21 tolerated(1) possibly_damaging(0.602) TCGA-L5-A4OT-01 12 54799668 54799668 A C ITGA5 Missense_Mutation p.F317V 0.27 deleterious(0.02) benign(0.005) TCGA-L5-A4OT-01 12 55042133 55042133 T C DCD 5'UTR 0.38 TCGA-L5-A4OT-01 12 55356740 55356740 T G TESPA1 Missense_Mutation p.Q314H 0.29 deleterious(0) possibly_damaging(0.902) TCGA-L5-A4OT-01 12 65445161 65445161 G A WIF1 Missense_Mutation p.R370W 0.17 deleterious_low_confidence(0.03) benign(0.2) TCGA-L5-A4OT-01 12 70965008 70965008 A T PTPRB Silent p.T1056T 0.55 TCGA-L5-A4OT-01 12 78444899 78444899 A C NAV3 Missense_Mutation p.S830R 0.69 deleterious(0.01) benign(0.026) TCGA-L5-A4OT-01 13 101833582 101833582 A C NALCN Intron 0.10 TCGA-L5-A4OT-01 13 106119353 106119353 C A DAOA Intron 0.54 TCGA-L5-A4OT-01 13 108518858 108518858 G T FAM155A Missense_Mutation p.F29L 0.31 deleterious(0.02) probably_damaging(0.979) TCGA-L5-A4OT-01 13 25348977 25348977 A C RNF17 Missense_Mutation p.Q84H 0.17 deleterious_low_confidence(0.01) benign(0.276) TCGA-L5-A4OT-01 13 25822854 25822854 T G MTMR6 3'UTR 0.11 TCGA-L5-A4OT-01 13 36348801 36348801 T C DCLK1 Missense_Mutation p.D723G 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.728) TCGA-L5-A4OT-01 13 37270219 37270219 T G SERTM1 3'UTR 0.41 TCGA-L5-A4OT-01 13 47409370 47409370 A C HTR2A Missense_Mutation p.F340V 0.19 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OT-01 13 61987441 61987441 T C PCDH20 Missense_Mutation p.E264G 0.14 deleterious(0.02) probably_damaging(0.936) TCGA-L5-A4OT-01 13 86367622 86367622 T G SLITRK6 3'UTR 0.27 TCGA-L5-A4OT-01 13 95055742 95055742 T G GPC6 3'UTR 0.16 TCGA-L5-A4OT-01 14 53066829 53066829 A C GPR137C Splice_Site p.X163_splice 0.39 TCGA-L5-A4OT-01 14 70235812 70235812 A T SRSF5 Intron 0.22 TCGA-L5-A4OT-01 15 101098983 101098983 C T RNU6-181P 3'Flank 0.47 TCGA-L5-A4OT-01 15 20170343 20170343 A C IGHV1OR15-9 Silent p.T4T 0.31 TCGA-L5-A4OT-01 15 33922237 33922237 A C RYR3 Missense_Mutation p.T926P 0.48 probably_damaging(0.996) TCGA-L5-A4OT-01 15 34157941 34157941 C T RYR3 3'UTR 0.50 TCGA-L5-A4OT-01 15 48495579 48495579 A C CTXN2 3'UTR 0.44 TCGA-L5-A4OT-01 15 51975284 51975284 A G SCG3 Silent p.E48E 0.56 TCGA-L5-A4OT-01 15 54860049 54860049 A C UNC13C Missense_Mutation p.S2004R 0.45 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-L5-A4OT-01 15 56686979 56686979 G T TEX9 Nonsense_Mutation p.E259* 0.38 TCGA-L5-A4OT-01 15 73617465 73617465 G A HCN4 Silent p.F603F 0.32 TCGA-L5-A4OT-01 15 83395159 83395159 C T AC105339.2 3'Flank 0.22 TCGA-L5-A4OT-01 15 88522553 88522553 A C NTRK3 Intron 0.26 TCGA-L5-A4OT-01 16 16418617 16418617 C T PKD1P1 RNA 0.31 TCGA-L5-A4OT-01 16 418610 418610 T G MRPL28 Missense_Mutation p.K156T 0.29 deleterious(0.02) probably_damaging(0.931) TCGA-L5-A4OT-01 16 49315182 49315182 A G CBLN1 Silent p.S65S 0.38 TCGA-L5-A4OT-01 16 51174296 51174296 C T SALL1 Missense_Mutation p.E613K 0.57 tolerated(0.1) benign(0.079) TCGA-L5-A4OT-01 16 55363013 55363013 A C IRX6 Missense_Mutation p.S375R 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OT-01 16 70253607 70253607 C T FKSG63 5'Flank 0.40 TCGA-L5-A4OT-01 17 20405866 20405866 A C RP11-434D2.7 3'Flank 0.53 TCGA-L5-A4OT-01 17 3417857 3417857 G A TRPV3 Intron 0.50 TCGA-L5-A4OT-01 17 36622834 36622834 C T ARHGAP23 Missense_Mutation p.R304W 0.36 deleterious(0) possibly_damaging(0.719) TCGA-L5-A4OT-01 17 39240571 39240571 C A KRTAP4-7 Missense_Mutation p.T38N 0.28 deleterious(0.01) unknown(0) TCGA-L5-A4OT-01 17 48668900 48668900 G A CACNA1G Missense_Mutation p.R853Q 0.04 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OT-01 17 61939883 61939883 T C TCAM1P RNA 0.15 TCGA-L5-A4OT-01 17 63531788 63531788 C A AXIN2 Missense_Mutation p.Q731H 0.25 tolerated(0.1) benign(0.006) TCGA-L5-A4OT-01 17 68172555 68172555 A G KCNJ2 3'UTR 0.33 TCGA-L5-A4OT-01 17 68173644 68173644 A T KCNJ2 3'UTR 0.42 TCGA-L5-A4OT-01 17 72349029 72349029 A C KIF19 Missense_Mutation p.K684Q 0.24 deleterious(0.05) benign(0.339) TCGA-L5-A4OT-01 17 72349038 72349038 A C KIF19 Missense_Mutation p.S687R 0.25 tolerated(0.41) benign(0.002) TCGA-L5-A4OT-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.48 deleterious(0) probably_damaging(1) TCGA-L5-A4OT-01 18 12955489 12955489 A C SEH1L Missense_Mutation p.T64P 0.44 deleterious(0.01) probably_damaging(0.926) TCGA-L5-A4OT-01 18 14537832 14537832 A G POTEC Silent p.L260L 0.20 TCGA-L5-A4OT-01 18 30928927 30928927 A G CCDC178 Silent p.S128S 0.14 TCGA-L5-A4OT-01 18 31537451 31537451 A T NOL4 Missense_Mutation p.L423M 0.55 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OT-01 18 42618501 42618501 A C SETBP1 Missense_Mutation p.N1351T 0.34 tolerated(0.33) benign(0.03) TCGA-L5-A4OT-01 18 44122779 44122779 T G LOXHD1 Missense_Mutation p.K109T 0.16 deleterious(0) probably_damaging(0.98) TCGA-L5-A4OT-01 18 6171916 6171916 T G L3MBTL4 Missense_Mutation p.K336T 0.23 tolerated(0.55) probably_damaging(0.957) TCGA-L5-A4OT-01 18 7774237 7774237 C G PTPRM Missense_Mutation p.T55S 0.05 tolerated(0.4) benign(0) TCGA-L5-A4OT-01 19 21990314 21990314 T C ZNF43 3'UTR 0.10 TCGA-L5-A4OT-01 19 22157155 22157155 T A ZNF208 Missense_Mutation p.K227N 0.29 deleterious(0.05) benign(0.424) TCGA-L5-A4OT-01 19 22784354 22784354 A C AC011467.1 5'Flank 0.32 TCGA-L5-A4OT-01 19 31040352 31040352 T A ZNF536 Missense_Mutation p.L1276I 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.452) TCGA-L5-A4OT-01 19 37440578 37440578 T G ZNF568 Missense_Mutation p.F175V 0.11 tolerated(0.5) benign(0.024) TCGA-L5-A4OT-01 19 45575374 45575374 C G ZNF296 Missense_Mutation p.E305Q 0.26 tolerated(0.12) probably_damaging(0.922) TCGA-L5-A4OT-01 19 46511520 46511520 G A CCDC61 Missense_Mutation p.R171Q 0.24 deleterious(0.04) benign(0.074) TCGA-L5-A4OT-01 19 49912535 49912535 C T CCDC155 Nonsense_Mutation p.R381* 0.32 TCGA-L5-A4OT-01 19 53087039 53087039 T G ZNF701 3'UTR 0.19 TCGA-L5-A4OT-01 19 53770563 53770563 A C VN1R4 Missense_Mutation p.L119R 0.21 deleterious(0) probably_damaging(0.988) TCGA-L5-A4OT-01 19 54972329 54972329 G A LENG8 3'UTR 0.31 TCGA-L5-A4OT-01 19 56896406 56896406 T C ZNF582 Missense_Mutation p.Q127R 0.09 tolerated(0.35) benign(0.001) TCGA-L5-A4OT-01 19 56973713 56973713 T G ZNF667 Missense_Mutation p.K9N 0.09 tolerated(0.12) benign(0.081) TCGA-L5-A4OT-01 19 57325574 57325574 T G PEG3 Missense_Mutation p.E1412D 0.20 tolerated(0.33) benign(0.01) TCGA-L5-A4OT-01 19 57325616 57325616 T A PEG3 Missense_Mutation p.E1398D 0.26 tolerated(0.06) probably_damaging(0.996) TCGA-L5-A4OT-01 19 9059054 9059054 A C MUC16 Silent p.T9464T 0.09 TCGA-L5-A4OT-01 19 9085711 9085711 A C MUC16 Missense_Mutation p.L2035R 0.18 unknown(0) TCGA-L5-A4OT-01 19 9086530 9086530 A C MUC16 Missense_Mutation p.F1762C 0.13 unknown(0) TCGA-L5-A4OT-01 1 10397523 10397523 T A KIF1B Silent p.T1072T 0.16 TCGA-L5-A4OT-01 1 110740222 110740222 G A SLC6A17 Splice_Site p.X605_splice 0.63 TCGA-L5-A4OT-01 1 115398124 115398124 G A SYCP1 Silent p.P13P 0.29 TCGA-L5-A4OT-01 1 13717112 13717112 A C PRAMEF17 Missense_Mutation p.K200T 0.32 deleterious(0.04) benign(0.157) TCGA-L5-A4OT-01 1 151316714 151316714 T C RFX5 Missense_Mutation p.M172V 0.65 tolerated(0.07) possibly_damaging(0.709) TCGA-L5-A4OT-01 1 152325410 152325410 C T FLG2 Missense_Mutation p.G1618R 0.66 possibly_damaging(0.707) TCGA-L5-A4OT-01 1 152330122 152330122 T G FLG2 Missense_Mutation p.N47T 0.24 unknown(0) TCGA-L5-A4OT-01 1 152488000 152488000 C T CRCT1 Silent p.C47C 0.50 TCGA-L5-A4OT-01 1 152883271 152883271 T A IVL Missense_Mutation p.L333Q 0.22 tolerated(0.44) probably_damaging(0.993) TCGA-L5-A4OT-01 1 155227351 155227351 C T SCAMP3 Nonsense_Mutation p.W205* 0.65 TCGA-L5-A4OT-01 1 156843699 156843699 G A NTRK1 Missense_Mutation p.M375I 0.75 tolerated(0.39) benign(0.001) TCGA-L5-A4OT-01 1 157765845 157765845 T G FCRL1 3'UTR 0.25 TCGA-L5-A4OT-01 1 158450533 158450533 A C OR10R2 Missense_Mutation p.N289T 0.69 tolerated(0.07) benign(0.158) TCGA-L5-A4OT-01 1 158725609 158725609 A G OR6K6 Missense_Mutation p.Q335R 0.13 tolerated(0.1) benign(0.001) TCGA-L5-A4OT-01 1 159410360 159410360 A C OR10J1 Missense_Mutation p.K271T 0.59 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OT-01 1 159410501 159410501 A C OR10J1 Missense_Mutation p.K318T 0.28 tolerated(0.07) benign(0.066) TCGA-L5-A4OT-01 1 159505746 159505746 A G OR10J5 Missense_Mutation p.S18P 0.17 deleterious(0.01) benign(0.111) TCGA-L5-A4OT-01 1 170705354 170705354 A G PRRX1 3'UTR 0.21 TCGA-L5-A4OT-01 1 196884098 196884098 A C CFHR4 Missense_Mutation p.K456T 0.15 tolerated(0.12) benign(0.403) TCGA-L5-A4OT-01 1 197404057 197404057 A C CRB1 Missense_Mutation p.S1022R 0.17 tolerated(0.08) benign(0.026) TCGA-L5-A4OT-01 1 200878069 200878069 G T C1orf106 Splice_Site p.X262_splice 0.60 TCGA-L5-A4OT-01 1 204214812 204214812 T A PLEKHA6 Missense_Mutation p.I655F 0.09 deleterious(0) benign(0.398) TCGA-L5-A4OT-01 1 207014366 207014366 T C IL19 Silent p.C165C 0.27 TCGA-L5-A4OT-01 1 210977488 210977488 A G KCNH1 Missense_Mutation p.F495L 0.13 deleterious(0) possibly_damaging(0.816) TCGA-L5-A4OT-01 1 211432872 211432872 C - RCOR3 5'UTR 0.40 TCGA-L5-A4OT-01 1 216251460 216251460 T G USH2A Missense_Mutation p.N1848T 0.19 benign(0.027) TCGA-L5-A4OT-01 1 238090970 238090970 T C RP11-193H5.1 RNA 0.72 TCGA-L5-A4OT-01 1 247695585 247695585 T C OR2C3 Missense_Mutation p.S77G 0.28 deleterious(0.03) probably_damaging(0.97) TCGA-L5-A4OT-01 1 248112220 248112220 A C OR2L8 Silent p.R21R 0.22 TCGA-L5-A4OT-01 1 248487287 248487287 A T OR2M7 Missense_Mutation p.F195Y 0.12 tolerated(0.65) benign(0.314) TCGA-L5-A4OT-01 1 248525557 248525557 A G OR2T4 Silent p.S225S 0.10 TCGA-L5-A4OT-01 1 25166462 25166462 G A CLIC4 Missense_Mutation p.R176H 0.24 deleterious(0) benign(0.444) TCGA-L5-A4OT-01 1 33547001 33547001 C T ADC 5'UTR 0.46 TCGA-L5-A4OT-01 1 34662990 34662990 T C C1orf94 Missense_Mutation p.L162P 0.14 tolerated(0.08) possibly_damaging(0.805) TCGA-L5-A4OT-01 1 4772742 4772742 T G AJAP1 Missense_Mutation p.I271S 0.61 tolerated(0.13) benign(0.255) TCGA-L5-A4OT-01 1 4834617 4834617 C T AJAP1 Intron 0.43 TCGA-L5-A4OT-01 1 57431661 57431661 C G C8B 5'UTR 0.30 TCGA-L5-A4OT-01 1 79005298 79005298 T G PTGFR 3'UTR 0.12 TCGA-L5-A4OT-01 1 99470211 99470211 G A LPPR5 Missense_Mutation p.A6V 0.58 tolerated_low_confidence(0.34) benign(0) TCGA-L5-A4OT-01 20 20033128 20033128 A C CRNKL1 Silent p.G114G 0.16 TCGA-L5-A4OT-01 20 37121752 37121752 C T RALGAPB Silent p.H122H 0.29 TCGA-L5-A4OT-01 20 39802094 39802094 G A PLCG1 Missense_Mutation p.R1105Q 0.47 deleterious(0) probably_damaging(0.987) TCGA-L5-A4OT-01 20 40702163 40702163 T C PTPRT 3'UTR 0.17 TCGA-L5-A4OT-01 20 42143266 42143266 G A L3MBTL1 Intron 0.10 TCGA-L5-A4OT-01 20 48698186 48698186 C T UBE2V1 3'UTR 0.58 TCGA-L5-A4OT-01 20 49200334 49200334 A G PTPN1 3'UTR 0.33 TCGA-L5-A4OT-01 20 57428581 57428581 A C GNAS Missense_Mutation p.E87D 0.14 deleterious_low_confidence(0.01) unknown(0) TCGA-L5-A4OT-01 20 61987723 61987723 C A CHRNA4 Missense_Mutation p.Q91H 0.26 tolerated(0.45) possibly_damaging(0.865) TCGA-L5-A4OT-01 20 62837012 62837012 G A MYT1 Missense_Mutation p.G86S 0.36 benign(0.001) TCGA-L5-A4OT-01 21 10908859 10908859 A C TPTE Missense_Mutation p.F496V 0.16 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OT-01 22 28503055 28503055 T C TTC28 Silent p.G926G 0.62 TCGA-L5-A4OT-01 22 32009640 32009641 AG - SFI1 Frame_Shift_Del p.K933Sfs*23 0.45 TCGA-L5-A4OT-01 22 42457020 42457020 C T NAGA Missense_Mutation p.A337T 0.36 deleterious(0) possibly_damaging(0.884) TCGA-L5-A4OT-01 2 101892857 101892857 C T RNF149 3'UTR 0.22 TCGA-L5-A4OT-01 2 103321003 103321003 A T SLC9A2 Missense_Mutation p.T616S 0.47 tolerated(0.12) probably_damaging(0.993) TCGA-L5-A4OT-01 2 114195333 114195333 T C CBWD2 5'UTR 0.30 TCGA-L5-A4OT-01 2 1271190 1271190 A C SNTG2 Missense_Mutation p.Q377H 0.36 tolerated(0.24) benign(0.003) TCGA-L5-A4OT-01 2 130900195 130900195 T C CCDC74B Intron 0.05 TCGA-L5-A4OT-01 2 136872220 136872220 A C CXCR4 3'UTR 0.16 TCGA-L5-A4OT-01 2 1371290 1371290 A G SNTG2 3'UTR 0.15 TCGA-L5-A4OT-01 2 141004684 141004684 T C LRP1B Missense_Mutation p.K4432R 0.13 benign(0.292) TCGA-L5-A4OT-01 2 149803484 149803485 - C KIF5C Frame_Shift_Ins p.E221Afs*12 0.31 TCGA-L5-A4OT-01 2 167085273 167085273 T G SCN9A Missense_Mutation p.Q1367H 0.16 tolerated(0.11) benign(0.006) TCGA-L5-A4OT-01 2 167327161 167327161 T G SCN7A Missense_Mutation p.T210P 0.15 deleterious(0) possibly_damaging(0.832) TCGA-L5-A4OT-01 2 177502238 177502238 G T LINC01116 RNA 0.26 TCGA-L5-A4OT-01 2 179457000 179457000 T G TTN Missense_Mutation p.K19877N 0.14 TCGA-L5-A4OT-01 2 179459328 179459328 T G TTN Missense_Mutation p.K19298T 0.19 TCGA-L5-A4OT-01 2 179586627 179586627 T A TTN Missense_Mutation p.Q7588L 0.38 TCGA-L5-A4OT-01 2 179623798 179623798 C G TTN Missense_Mutation p.A3406P 0.30 TCGA-L5-A4OT-01 2 180308086 180308086 C T ZNF385B Missense_Mutation p.R436Q 0.31 deleterious(0.05) probably_damaging(0.946) TCGA-L5-A4OT-01 2 202213001 202213001 T G ALS2CR12 Missense_Mutation p.Q70H 0.11 tolerated(0.22) benign(0.03) TCGA-L5-A4OT-01 2 207814372 207814372 G A CPO Missense_Mutation p.D34N 0.18 tolerated(0.06) benign(0.027) TCGA-L5-A4OT-01 2 210574896 210574896 A C MAP2 Missense_Mutation p.N1664T 0.47 deleterious(0.01) probably_damaging(0.977) TCGA-L5-A4OT-01 2 212251663 212251663 G - ERBB4 Frame_Shift_Del p.T1133Pfs*19 0.09 TCGA-L5-A4OT-01 2 21231710 21231710 T G APOB Missense_Mutation p.D2677A 0.35 probably_damaging(0.996) TCGA-L5-A4OT-01 2 238275437 238275437 C T COL6A3 Missense_Mutation p.R1798H 0.37 probably_damaging(0.993) TCGA-L5-A4OT-01 2 239355133 239355133 A C ASB1 Missense_Mutation p.K330T 0.18 tolerated(0.16) benign(0.012) TCGA-L5-A4OT-01 2 3322722 3322722 G A TSSC1 Intron 0.29 TCGA-L5-A4OT-01 2 42119872 42119872 C T AC104654.1 RNA 0.21 TCGA-L5-A4OT-01 2 46609651 46609651 G A EPAS1 Missense_Mutation p.G792E 0.23 deleterious(0.04) benign(0.016) TCGA-L5-A4OT-01 2 49191062 49191062 C A FSHR Nonsense_Mutation p.E300* 0.15 TCGA-L5-A4OT-01 2 49210248 49210248 T A FSHR Missense_Mutation p.Q194H 0.33 deleterious(0.04) benign(0.015) TCGA-L5-A4OT-01 2 55074658 55074658 G A EML6 Missense_Mutation p.R362H 0.40 deleterious(0.03) benign(0.107) TCGA-L5-A4OT-01 2 5838076 5838076 T G SOX11 3'UTR 0.23 TCGA-L5-A4OT-01 3 119306346 119306346 A C ADPRH Missense_Mutation p.K232T 0.19 tolerated(0.08) benign(0.016) TCGA-L5-A4OT-01 3 119306349 119306349 T G ADPRH Missense_Mutation p.L233R 0.19 tolerated(0.3) possibly_damaging(0.554) TCGA-L5-A4OT-01 3 126291232 126291232 T C TXNRD3NB Missense_Mutation p.K52R 0.16 possibly_damaging(0.486) TCGA-L5-A4OT-01 3 134920329 134920329 A G EPHB1 Missense_Mutation p.Q715R 0.15 tolerated(0.09) benign(0.196) TCGA-L5-A4OT-01 3 15073950 15073950 G A NR2C2 Missense_Mutation p.R411H 0.28 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OT-01 3 164710181 164710181 A T SI Missense_Mutation p.F1616I 0.29 tolerated(0.26) possibly_damaging(0.548) TCGA-L5-A4OT-01 3 169574569 169574569 C A LRRC31 Missense_Mutation p.K193N 0.16 tolerated(0.12) benign(0.005) TCGA-L5-A4OT-01 3 20169040 20169040 A G KAT2B Missense_Mutation p.K583R 0.06 deleterious(0) probably_damaging(0.992) TCGA-L5-A4OT-01 3 3098442 3098442 G A CNTN4 3'UTR 0.46 TCGA-L5-A4OT-01 3 35727288 35727288 T G ARPP21 Intron 0.24 TCGA-L5-A4OT-01 3 50220414 50220414 G A SEMA3F Silent p.P327P 0.26 TCGA-L5-A4OT-01 3 51266099 51266099 A C DOCK3 Missense_Mutation p.E552A 0.25 deleterious(0.02) possibly_damaging(0.884) TCGA-L5-A4OT-01 3 55002516 55002516 A C CACNA2D3 Missense_Mutation p.K830T 0.36 tolerated(0.46) probably_damaging(0.994) TCGA-L5-A4OT-01 3 55052344 55052344 A C CACNA2D3 Missense_Mutation p.K996T 0.39 deleterious(0) benign(0.293) TCGA-L5-A4OT-01 3 55503834 55503834 T G WNT5A 3'UTR 0.13 TCGA-L5-A4OT-01 3 66419918 66419918 A C SLC25A26 Silent p.A195A 0.38 TCGA-L5-A4OT-01 3 85961683 85961683 A G CADM2 Silent p.L223L 0.13 TCGA-L5-A4OT-01 3 97851669 97851669 T G OR5H1 Missense_Mutation p.L43R 0.13 deleterious(0.01) benign(0.299) TCGA-L5-A4OT-01 3 98240606 98240606 C T CLDND1 Intron 0.16 TCGA-L5-A4OT-01 4 106290793 106290793 A C PPA2 3'UTR 0.21 TCGA-L5-A4OT-01 4 126242658 126242658 C T FAT4 Missense_Mutation p.R1698W 0.25 probably_damaging(0.972) TCGA-L5-A4OT-01 4 126370822 126370822 T G FAT4 Missense_Mutation p.L2884R 0.35 probably_damaging(0.965) TCGA-L5-A4OT-01 4 151168808 151168808 A G DCLK2 Missense_Mutation p.E628G 0.15 deleterious(0.04) benign(0.073) TCGA-L5-A4OT-01 4 152601042 152601042 G T PET112 Missense_Mutation p.P445T 0.44 tolerated(0.13) probably_damaging(0.996) TCGA-L5-A4OT-01 4 15444285 15444285 A C C1QTNF7 Missense_Mutation p.E251D 0.19 deleterious(0) probably_damaging(0.97) TCGA-L5-A4OT-01 4 20731058 20731058 A C KCNIP4 3'UTR 0.38 TCGA-L5-A4OT-01 4 25419982 25419982 T G ANAPC4 Missense_Mutation p.L802R 0.17 deleterious_low_confidence(0.01) benign(0.164) TCGA-L5-A4OT-01 4 2930143 2930143 G A ADD1 Missense_Mutation p.A734T 0.54 deleterious_low_confidence(0.04) unknown(0) TCGA-L5-A4OT-01 4 2931593 2931593 T C ADD1 3'UTR 0.51 TCGA-L5-A4OT-01 4 47570977 47570977 T G ATP10D Missense_Mutation p.L993V 0.13 tolerated(0.51) benign(0.035) TCGA-L5-A4OT-01 4 5468497 5468497 A G STK32B Missense_Mutation p.H326R 0.17 tolerated(0.06) benign(0.256) TCGA-L5-A4OT-01 4 5812093 5812093 A C EVC Missense_Mutation p.K937T 0.33 tolerated(0.08) possibly_damaging(0.891) TCGA-L5-A4OT-01 4 6087238 6087238 A C JAKMIP1 Missense_Mutation p.V248G 0.23 tolerated(0.35) benign(0.009) TCGA-L5-A4OT-01 4 71347210 71347210 C T MUC7 Missense_Mutation p.S250F 0.65 deleterious(0.01) unknown(0) TCGA-L5-A4OT-01 4 80246448 80246448 T G NAA11 Missense_Mutation p.K195T 0.63 deleterious(0.04) benign(0.045) TCGA-L5-A4OT-01 5 109202768 109202768 G T MAN2A1 3'UTR 0.34 TCGA-L5-A4OT-01 5 1201910 1201911 - GAA SLC6A19 Nonsense_Mutation p.C49delins* 0.47 TCGA-L5-A4OT-01 5 13729594 13729594 A T DNAH5 Nonsense_Mutation p.L3946* 0.12 TCGA-L5-A4OT-01 5 13752275 13752275 T C DNAH5 Missense_Mutation p.R3666G 0.41 benign(0.415) TCGA-L5-A4OT-01 5 13769697 13769697 T G DNAH5 Missense_Mutation p.K3211N 0.12 possibly_damaging(0.728) TCGA-L5-A4OT-01 5 140182594 140182594 C T PCDHA3 Silent p.N604N 0.35 TCGA-L5-A4OT-01 5 140263526 140263526 A T PCDHA13 Missense_Mutation p.E558V 0.35 deleterious_low_confidence(0.02) benign(0.061) TCGA-L5-A4OT-01 5 140574935 140574935 A T PCDHB10 3'UTR 0.13 TCGA-L5-A4OT-01 5 140589472 140589472 T C PCDHB12 Silent p.S331S 0.18 TCGA-L5-A4OT-01 5 140615402 140615402 T G PCDHB18 RNA 0.14 TCGA-L5-A4OT-01 5 155771519 155771519 T A SGCD Silent p.T8T 0.12 TCGA-L5-A4OT-01 5 156016259 156016259 A C SGCD Missense_Mutation p.K105Q 0.17 tolerated(1) benign(0.002) TCGA-L5-A4OT-01 5 156390172 156390172 T G TIMD4 Missense_Mutation p.E13A 0.29 deleterious(0.01) possibly_damaging(0.658) TCGA-L5-A4OT-01 5 168098212 168098212 A G SLIT3 Missense_Mutation p.L1373P 0.08 tolerated(0.25) possibly_damaging(0.908) TCGA-L5-A4OT-01 5 172659657 172659657 A T NKX2-5 Missense_Mutation p.V297D 0.26 deleterious(0) possibly_damaging(0.804) TCGA-L5-A4OT-01 5 177689227 177689227 G A COL23A1 Silent p.D222D 0.35 TCGA-L5-A4OT-01 5 36066893 36066893 C T UGT3A2 5'UTR 0.19 TCGA-L5-A4OT-01 5 41382172 41382172 G C PLCXD3 Missense_Mutation p.Q190E 0.10 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OT-01 5 43653170 43653170 C T NNT Silent p.L638L 0.12 TCGA-L5-A4OT-01 5 53409096 53409096 C T ARL15 Missense_Mutation p.C133Y 0.22 tolerated(0.06) probably_damaging(0.95) TCGA-L5-A4OT-01 5 55265471 55265471 C T IL6ST Missense_Mutation p.D93N 0.15 tolerated(0.54) benign(0.003) TCGA-L5-A4OT-01 5 7727305 7727305 A C ADCY2 Missense_Mutation p.K601T 0.39 deleterious(0) possibly_damaging(0.49) TCGA-L5-A4OT-01 5 9036719 9036719 T G SEMA5A 3'UTR 0.43 TCGA-L5-A4OT-01 5 9036958 9036958 T G SEMA5A 3'UTR 0.21 TCGA-L5-A4OT-01 5 95194594 95194594 A C C5orf27 Missense_Mutation p.E54A 0.32 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-L5-A4OT-01 6 117128364 117128364 A C GPRC6A Silent p.G168G 0.19 TCGA-L5-A4OT-01 6 117240321 117240321 T G RFX6 Missense_Mutation p.N348K 0.11 tolerated(0.46) benign(0.15) TCGA-L5-A4OT-01 6 121769962 121769962 T G GJA1 3'UTR 0.35 TCGA-L5-A4OT-01 6 127518788 127518788 T G RSPO3 3'Flank 0.31 TCGA-L5-A4OT-01 6 130762765 130762765 T G TMEM200A Missense_Mutation p.L400V 0.32 deleterious(0.01) probably_damaging(0.991) TCGA-L5-A4OT-01 6 136581902 136581902 T C BCLAF1 3'UTR 0.27 TCGA-L5-A4OT-01 6 152470788 152470788 T G SYNE1 Missense_Mutation p.I8156L 0.25 possibly_damaging(0.887) TCGA-L5-A4OT-01 6 152683425 152683425 A C SYNE1 Missense_Mutation p.S3393R 0.08 possibly_damaging(0.478) TCGA-L5-A4OT-01 6 152774796 152774796 T G SYNE1 Missense_Mutation p.E984D 0.28 benign(0.217) TCGA-L5-A4OT-01 6 152831487 152831487 T G SYNE1 Missense_Mutation p.N141T 0.10 possibly_damaging(0.639) TCGA-L5-A4OT-01 6 161173176 161173176 G T PLG Missense_Mutation p.A719S 0.31 deleterious(0.03) possibly_damaging(0.801) TCGA-L5-A4OT-01 6 163990904 163990904 T G QKI Intron 0.28 TCGA-L5-A4OT-01 6 21597146 21597149 TGTT - SOX4 3'UTR 0.47 TCGA-L5-A4OT-01 6 28541180 28541180 G A SCAND3 Missense_Mutation p.P829L 0.33 tolerated_low_confidence(0.72) probably_damaging(0.997) TCGA-L5-A4OT-01 6 2948893 2948893 G A SERPINB6 Missense_Mutation p.T257M 0.31 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A4OT-01 6 405041 405041 G A IRF4 Missense_Mutation p.G375S 0.24 deleterious(0.02) benign(0.172) TCGA-L5-A4OT-01 6 42834901 42834901 G A GLTSCR1L 3'UTR 0.28 TCGA-L5-A4OT-01 6 53788114 53788114 C T LRRC1 3'UTR 0.24 TCGA-L5-A4OT-01 6 62390321 62390321 T C KHDRBS2 3'UTR 0.27 TCGA-L5-A4OT-01 6 73830211 73830211 T C KCNQ5 Silent p.V377V 0.17 TCGA-L5-A4OT-01 6 75822931 75822931 T G COL12A1 Missense_Mutation p.S2647R 0.29 benign(0.227) TCGA-L5-A4OT-01 7 1024894 1024894 G A CYP2W1 Missense_Mutation p.V194M 0.26 tolerated(0.09) benign(0.15) TCGA-L5-A4OT-01 7 103322622 103322622 A G RELN Silent p.D410D 0.16 TCGA-L5-A4OT-01 7 106809406 106809406 A - HBP1 5'Flank 0.20 TCGA-L5-A4OT-01 7 107423731 107423731 G A SLC26A3 Silent p.I346I 0.06 TCGA-L5-A4OT-01 7 114656050 114656050 A G MDFIC 3'UTR 0.09 TCGA-L5-A4OT-01 7 115580835 115580835 T C TFEC Missense_Mutation p.S272G 0.14 tolerated(0.1) benign(0.012) TCGA-L5-A4OT-01 7 121651971 121651971 T G PTPRZ1 Silent p.T957T 0.12 TCGA-L5-A4OT-01 7 12668813 12668813 T G SCIN Missense_Mutation p.Y429D 0.45 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OT-01 7 150174550 150174550 G A GIMAP8 Silent p.A560A 0.40 TCGA-L5-A4OT-01 7 150767861 150767861 C T SLC4A2 Missense_Mutation p.R538W 0.34 deleterious(0) probably_damaging(0.91) TCGA-L5-A4OT-01 7 1887222 1887222 C T AC110781.3 Missense_Mutation p.P156L 0.25 possibly_damaging(0.856) TCGA-L5-A4OT-01 7 33767216 33767216 A C RP11-89N17.1 5'UTR 0.13 TCGA-L5-A4OT-01 7 63982586 63982586 G C ZNF680 Missense_Mutation p.F182L 0.47 tolerated(0.12) benign(0.022) TCGA-L5-A4OT-01 7 6548003 6548003 G A GRID2IP Silent p.F719F 0.30 TCGA-L5-A4OT-01 7 82545548 82545548 T G PCLO Missense_Mutation p.Q3918H 0.25 unknown(0) TCGA-L5-A4OT-01 7 82585782 82585782 T G PCLO Missense_Mutation p.K1496T 0.07 unknown(0) TCGA-L5-A4OT-01 7 87150134 87150134 T G ABCB1 Missense_Mutation p.K915T 0.15 tolerated(0.38) benign(0.148) TCGA-L5-A4OT-01 7 89894658 89894658 G A C7orf63 Missense_Mutation p.A134T 0.29 tolerated(0.14) benign(0.126) TCGA-L5-A4OT-01 7 93054367 93054367 C T CALCR 3'UTR 0.16 TCGA-L5-A4OT-01 7 93519623 93519623 C T TFPI2 Missense_Mutation p.A33T 0.21 tolerated(0.4) benign(0.039) TCGA-L5-A4OT-01 7 96113146 96113146 T G C7orf76 3'UTR 0.21 TCGA-L5-A4OT-01 8 10465404 10465404 T G RP1L1 Missense_Mutation p.E2068D 0.03 unknown(0) TCGA-L5-A4OT-01 8 10465425 10465425 T G RP1L1 Missense_Mutation p.E2061D 0.02 unknown(0) TCGA-L5-A4OT-01 8 104898096 104898096 T G RIMS2 Silent p.S423S 0.21 TCGA-L5-A4OT-01 8 104924382 104924382 A T RIMS2 Silent p.G598G 0.16 TCGA-L5-A4OT-01 8 105503755 105503755 C T LRP12 Missense_Mutation p.E576K 0.62 tolerated(0.15) benign(0.395) TCGA-L5-A4OT-01 8 105509626 105509626 T G LRP12 Missense_Mutation p.N385T 0.30 deleterious(0.02) probably_damaging(0.933) TCGA-L5-A4OT-01 8 118174052 118174052 T C SLC30A8 Silent p.A216A 0.14 TCGA-L5-A4OT-01 8 121238870 121238870 A C COL14A1 Missense_Mutation p.E623D 0.29 tolerated(0.5) benign(0.003) TCGA-L5-A4OT-01 8 125563736 125563736 G T MTSS1 3'UTR 0.16 TCGA-L5-A4OT-01 8 32621602 32621602 A G NRG1 Silent p.Q540Q 0.14 TCGA-L5-A4OT-01 8 32621613 32621613 A G NRG1 Missense_Mutation p.K544R 0.17 tolerated(0.2) probably_damaging(0.954) TCGA-L5-A4OT-01 8 39018479 39018479 A C ADAM32 Missense_Mutation p.T197P 0.28 deleterious(0.04) benign(0.004) TCGA-L5-A4OT-01 8 52233397 52233397 T C PXDNL Missense_Mutation p.R1403G 0.54 deleterious(0.01) possibly_damaging(0.793) TCGA-L5-A4OT-01 8 54147611 54147611 A C OPRK1 Silent p.A106A 0.12 TCGA-L5-A4OT-01 8 57287365 57287365 C T SDR16C6P RNA 0.48 TCGA-L5-A4OT-01 8 63976810 63976810 G T TTPA Silent p.V206V 0.16 TCGA-L5-A4OT-01 8 69020466 69020466 T G PREX2 Silent p.S946S 0.27 TCGA-L5-A4OT-01 8 72111006 72111006 T C EYA1 3'UTR 0.36 TCGA-L5-A4OT-01 9 115760170 115760171 - TT ZNF883 RNA 0.23 TCGA-L5-A4OT-01 9 119738455 119738455 G T ASTN2 Nonsense_Mutation p.Y512* 0.29 TCGA-L5-A4OT-01 9 123929934 123929934 C T CNTRL Silent p.L1941L 0.25 TCGA-L5-A4OT-01 9 138656941 138656941 G A KCNT1 Missense_Mutation p.R367H 0.14 deleterious(0.02) benign(0.1) TCGA-L5-A4OT-01 9 14857575 14857575 A G FREM1 Silent p.D268D 0.33 TCGA-L5-A4OT-01 9 19058779 19058779 G A HAUS6 Silent p.C662C 0.39 TCGA-L5-A4OT-01 9 3824394 3824394 A C GLIS3 3'Flank 0.18 TCGA-L5-A4OT-01 9 5127374 5127374 T C JAK2 3'UTR 0.22 TCGA-L5-A4OT-01 9 82340902 82340902 G C TLE4 3'Flank 0.44 TCGA-L5-A4OT-01 9 91610383 91610383 A C C9orf47 3'UTR 0.12 TCGA-L5-A4OT-01 X 114143061 114143061 A - HTR2C 3'UTR 0.45 TCGA-L5-A4OT-01 X 12734450 12734450 T C FRMPD4 Silent p.S624S 0.25 TCGA-L5-A4OT-01 X 137785181 137785181 A C FGF13 Missense_Mutation p.L133V 0.64 tolerated(0.32) benign(0.205) TCGA-L5-A4OT-01 X 145078203 145078203 A G MIR892A RNA 0.66 TCGA-L5-A4OT-01 X 54259372 54259372 T A WNK3 Missense_Mutation p.K1570N 0.61 deleterious(0) benign(0.244) TCGA-L5-A4OT-01 X 65242583 65242583 T A VSIG4 Intron 0.59 TCGA-L5-A4OT-01 X 65817750 65817750 A C EDA2R 3'Flank 0.83 TCGA-L5-A4OT-01 X 75004141 75004141 A C MAGEE2 Missense_Mutation p.F249C 0.93 deleterious(0.03) probably_damaging(0.998) TCGA-L5-A4OT-01 X 99663101 99663101 A C PCDH19 Silent p.T165T 0.50 TCGA-L5-A4OU-01 10 115609147 115609147 T C DCLRE1A Missense_Mutation p.K573E 0.14 tolerated(0.11) benign(0.013) TCGA-L5-A4OU-01 10 121569640 121569640 A C INPP5F Missense_Mutation p.K533T 0.30 deleterious(0) probably_damaging(0.972) TCGA-L5-A4OU-01 10 121701157 121701157 T G SEC23IP 3'UTR 0.09 TCGA-L5-A4OU-01 10 124697275 124697275 T C C10orf88 Missense_Mutation p.K350R 0.10 tolerated(0.55) benign(0.08) TCGA-L5-A4OU-01 10 13337564 13337564 T G PHYH Missense_Mutation p.K59N 0.12 tolerated(0.11) benign(0.045) TCGA-L5-A4OU-01 10 50178291 50178291 T A WDFY4 Missense_Mutation p.L2962H 0.13 deleterious(0) probably_damaging(0.982) TCGA-L5-A4OU-01 10 61007287 61007287 G T FAM13C 3'UTR 0.13 TCGA-L5-A4OU-01 10 69921569 69921569 A G MYPN Intron 0.15 TCGA-L5-A4OU-01 10 86277312 86277312 T G CCSER2 3'UTR 0.16 TCGA-L5-A4OU-01 10 98820457 98820457 T C SLIT1 Missense_Mutation p.D294G 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A4OU-01 11 118850229 118850229 C A FOXR1 Silent p.P154P 0.11 TCGA-L5-A4OU-01 11 132286951 132286951 T C OPCML 3'UTR 0.35 TCGA-L5-A4OU-01 11 15199878 15199878 A G INSC Missense_Mutation p.Q202R 0.11 tolerated(0.36) benign(0.045) TCGA-L5-A4OU-01 11 19970543 19970543 A G NAV2 Silent p.E877E 0.21 TCGA-L5-A4OU-01 11 21306075 21306075 T G NELL1 Intron 0.12 TCGA-L5-A4OU-01 11 36597527 36597527 G A RAG1 Silent p.K891K 0.27 TCGA-L5-A4OU-01 11 40135839 40135839 G C LRRC4C 3'UTR 0.21 TCGA-L5-A4OU-01 11 45671102 45671102 A G CHST1 3'UTR 0.07 TCGA-L5-A4OU-01 11 46418365 46418365 C G AMBRA1 3'UTR 0.13 TCGA-L5-A4OU-01 11 55037975 55037975 A C TRIM48 3'UTR 0.25 TCGA-L5-A4OU-01 11 58207475 58207475 G A OR5B12 Silent p.D50D 0.18 TCGA-L5-A4OU-01 11 59282910 59282910 C A OR4D9 Missense_Mutation p.D175E 0.32 deleterious(0.01) benign(0.434) TCGA-L5-A4OU-01 11 61513198 61513198 G T DAGLA 3'UTR 0.32 TCGA-L5-A4OU-01 11 61595858 61595858 G A FADS2 5'UTR 0.20 TCGA-L5-A4OU-01 11 62299594 62299594 C T AHNAK Silent p.E765E 0.27 TCGA-L5-A4OU-01 11 66329607 66329607 G A CTSF 3'Flank 0.26 TCGA-L5-A4OU-01 11 71512086 71512086 G A FAM86C1 3'UTR 0.05 TCGA-L5-A4OU-01 11 74056564 74056564 A G PGM2L1 Missense_Mutation p.S390P 0.18 deleterious(0) probably_damaging(0.986) TCGA-L5-A4OU-01 11 75314522 75314522 C T MAP6 Intron 0.15 TCGA-L5-A4OU-01 12 132811455 132811455 G A GALNT9 Missense_Mutation p.T100M 0.55 tolerated_low_confidence(0.08) possibly_damaging(0.895) TCGA-L5-A4OU-01 12 23687389 23687389 T A SOX5 Missense_Mutation p.M686L 0.14 tolerated(0.27) benign(0.003) TCGA-L5-A4OU-01 12 50041075 50041075 T A FMNL3 Missense_Mutation p.K952M 0.11 tolerated(0.08) probably_damaging(0.997) TCGA-L5-A4OU-01 12 52162882 52162882 C T SCN8A Silent p.I1045I 0.10 TCGA-L5-A4OU-01 12 54020194 54020194 A C ATF7 5'Flank 0.20 TCGA-L5-A4OU-01 12 56607827 56607827 C T RNF41 Missense_Mutation p.G2E 0.16 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OU-01 12 79985771 79985771 T C PAWR 3'UTR 0.38 TCGA-L5-A4OU-01 12 88442904 88442904 A G C12orf29 3'UTR 0.50 TCGA-L5-A4OU-01 12 9013757 9013757 G C A2ML1 Silent p.R1122R 0.12 TCGA-L5-A4OU-01 12 9393917 9393917 T G LINC00987 RNA 0.13 TCGA-L5-A4OU-01 13 101910908 101910908 G A NALCN Silent p.S384S 0.20 TCGA-L5-A4OU-01 13 103397262 103397262 C T LINC00283 RNA 0.18 TCGA-L5-A4OU-01 13 25016815 25016815 T A PARP4 Missense_Mutation p.K1152N 0.11 deleterious(0) probably_damaging(0.917) TCGA-L5-A4OU-01 13 28897002 28897002 C T FLT1 Missense_Mutation p.V960I 0.12 tolerated(0.2) benign(0.034) TCGA-L5-A4OU-01 13 48986962 48986962 C T LPAR6 5'UTR 0.24 TCGA-L5-A4OU-01 13 88328847 88328847 G A SLITRK5 Missense_Mutation p.A402T 0.13 tolerated(0.06) benign(0.021) TCGA-L5-A4OU-01 14 102510643 102510643 G A DYNC1H1 Silent p.P4239P 0.32 TCGA-L5-A4OU-01 14 22887365 22887365 T G TRDV2 5'Flank 0.19 TCGA-L5-A4OU-01 14 22891975 22891975 T C TRDV2 Missense_Mutation p.L96P 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A4OU-01 14 23895180 23895180 G A MYH7 Missense_Mutation p.R719W 0.12 deleterious(0) probably_damaging(0.978) TCGA-L5-A4OU-01 14 51345478 51345478 T C ABHD12B Missense_Mutation p.L83P 0.09 deleterious(0) probably_damaging(0.953) TCGA-L5-A4OU-01 14 53324533 53324533 T A FERMT2 3'UTR 0.27 TCGA-L5-A4OU-01 14 75376518 75376518 G T RPS6KL1 Missense_Mutation p.A333D 0.21 tolerated(0.38) benign(0.004) TCGA-L5-A4OU-01 14 76114486 76114486 C T FLVCR2 3'UTR 0.24 TCGA-L5-A4OU-01 14 76211920 76211920 T C TTLL5 Missense_Mutation p.Y495H 0.09 deleterious(0.02) benign(0.101) TCGA-L5-A4OU-01 14 80330584 80330584 T A NRXN3 3'Flank 0.09 TCGA-L5-A4OU-01 14 80664627 80664627 T G DIO2 3'Flank 0.16 TCGA-L5-A4OU-01 15 22382597 22382597 A C OR4N4 Missense_Mutation p.N42T 0.12 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OU-01 15 28200304 28200305 - T OCA2 Frame_Shift_Ins p.H615Afs*2 0.17 TCGA-L5-A4OU-01 15 65623958 65623958 G A IGDCC3 Silent p.A396A 0.26 TCGA-L5-A4OU-01 15 78401611 78401611 T C CIB2 Silent p.R104R 0.25 TCGA-L5-A4OU-01 15 90177098 90177098 T G KIF7 Missense_Mutation p.K804T 0.14 deleterious(0.04) probably_damaging(0.937) TCGA-L5-A4OU-01 15 91172647 91172647 T C CRTC3 Silent p.S383S 0.08 TCGA-L5-A4OU-01 15 92987970 92987970 T C ST8SIA2 Missense_Mutation p.V218A 0.24 benign(0.009) TCGA-L5-A4OU-01 16 109078 109078 C T RHBDF1 Missense_Mutation p.R681Q 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OU-01 16 13329093 13329093 T C SHISA9 Missense_Mutation p.F368L 0.09 tolerated(0.51) benign(0.002) TCGA-L5-A4OU-01 16 18887619 18887619 T G SMG1 Missense_Mutation p.T573P 0.10 tolerated(0.21) benign(0.092) TCGA-L5-A4OU-01 16 2011736 2011736 C T NDUFB10 Intron 0.22 TCGA-L5-A4OU-01 16 2158502 2158502 C T PKD1 Silent p.A2222A 0.07 TCGA-L5-A4OU-01 16 22111591 22111591 G A VWA3A Missense_Mutation p.C101Y 0.11 tolerated(1) benign(0.001) TCGA-L5-A4OU-01 16 3333830 3333830 C T ZNF263 Silent p.G4G 0.23 TCGA-L5-A4OU-01 16 4751504 4751504 G A ANKS3 Silent p.S350S 0.15 TCGA-L5-A4OU-01 16 48119527 48119527 G A ABCC12 Nonsense_Mutation p.R1269* 0.22 TCGA-L5-A4OU-01 16 5112546 5112546 C T C16orf89 Missense_Mutation p.A80T 0.26 deleterious(0.02) probably_damaging(0.948) TCGA-L5-A4OU-01 16 55523591 55523591 A T MMP2 Missense_Mutation p.E345D 0.13 tolerated(0.34) benign(0.001) TCGA-L5-A4OU-01 16 67304975 67304975 T C SLC9A5 Silent p.S851S 0.14 TCGA-L5-A4OU-01 16 69154483 69154483 C A CHTF8 Missense_Mutation p.A71S 0.12 deleterious(0) probably_damaging(0.938) TCGA-L5-A4OU-01 16 70874051 70874051 A G HYDIN Missense_Mutation p.F4320S 0.15 possibly_damaging(0.82) TCGA-L5-A4OU-01 16 74423763 74423763 G A NPIPB15 Missense_Mutation p.E196K 0.19 deleterious_low_confidence(0.03) benign(0.044) TCGA-L5-A4OU-01 16 7726799 7726799 C T RBFOX1 Silent p.Y339Y 0.29 TCGA-L5-A4OU-01 16 79630648 79630648 T - MAF Intron 0.22 TCGA-L5-A4OU-01 17 27041593 27041593 A C RAB34 3'UTR 0.10 TCGA-L5-A4OU-01 17 37074945 37074945 C T LASP1 Nonsense_Mutation p.Q234* 0.13 TCGA-L5-A4OU-01 17 37880988 37880989 - TGA ERBB2 In_Frame_Ins p.M774dup 0.82 TCGA-L5-A4OU-01 17 41844584 41844584 A C DUSP3 3'UTR 0.21 TCGA-L5-A4OU-01 17 42169172 42169172 G A HDAC5 Silent p.L355L 0.33 TCGA-L5-A4OU-01 17 42427872 42427872 C T GRN Silent p.H175H 0.43 TCGA-L5-A4OU-01 17 43012682 43012682 C T KIF18B Missense_Mutation p.R139H 0.43 tolerated(0.06) probably_damaging(1) TCGA-L5-A4OU-01 17 43530941 43530941 G A PLEKHM1 Silent p.A759A 0.46 TCGA-L5-A4OU-01 17 47583763 47583763 A T NGFR Missense_Mutation p.D104V 0.09 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OU-01 17 51901055 51901055 C A KIF2B Silent p.R221R 0.31 TCGA-L5-A4OU-01 17 56439977 56439977 C A RNF43 Silent p.V205V 0.14 TCGA-L5-A4OU-01 17 7099575 7099575 G A DLG4 Missense_Mutation p.S465F 0.42 deleterious(0.02) probably_damaging(0.993) TCGA-L5-A4OU-01 17 72843625 72843625 G A GRIN2C Missense_Mutation p.A608V 0.49 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OU-01 17 7577117 7577117 A C TP53 Missense_Mutation p.V274G 0.33 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OU-01 17 7798284 7798284 A G CHD3 Missense_Mutation p.E499G 0.14 benign(0.403) TCGA-L5-A4OU-01 17 78346353 78346353 C T RNF213 Silent p.S4190S 0.10 TCGA-L5-A4OU-01 17 78444429 78444429 G A NPTX1 3'UTR 0.50 TCGA-L5-A4OU-01 18 14522271 14522271 T G POTEC Missense_Mutation p.E464A 0.16 deleterious(0) benign(0.239) TCGA-L5-A4OU-01 18 22806956 22806956 T G ZNF521 Missense_Mutation p.K309T 0.09 deleterious(0.02) possibly_damaging(0.731) TCGA-L5-A4OU-01 18 2579004 2579004 A G NDC80 Silent p.L185L 0.17 TCGA-L5-A4OU-01 18 7079982 7079982 A C LAMA1 Missense_Mutation p.L113V 0.10 deleterious(0) probably_damaging(0.98) TCGA-L5-A4OU-01 18 74681549 74681549 T C ZNF236 3'UTR 0.19 TCGA-L5-A4OU-01 19 13414639 13414639 G A CACNA1A Silent p.G682G 0.16 TCGA-L5-A4OU-01 19 19304837 19304837 G A RFXANK Missense_Mutation p.G28R 0.28 tolerated_low_confidence(0.96) benign(0.001) TCGA-L5-A4OU-01 19 22375898 22375898 T C ZNF676 Missense_Mutation p.K17R 0.37 deleterious(0.01) benign(0.302) TCGA-L5-A4OU-01 19 24309961 24309961 T G ZNF254 Missense_Mutation p.F387V 0.07 deleterious(0) probably_damaging(0.977) TCGA-L5-A4OU-01 19 35851116 35851116 T A FFAR3 3'UTR 0.05 TCGA-L5-A4OU-01 19 38126363 38126363 C T ZFP30 Missense_Mutation p.G360E 0.09 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OU-01 19 40009751 40009751 T G SELV Missense_Mutation p.I335S 0.12 deleterious(0) possibly_damaging(0.803) TCGA-L5-A4OU-01 19 40540207 40540207 C T ZNF780B 3'UTR 0.10 TCGA-L5-A4OU-01 19 44890666 44890666 G A ZNF285 Nonsense_Mutation p.Q581* 0.08 TCGA-L5-A4OU-01 19 45655825 45655825 G A NKPD1 Missense_Mutation p.R624C 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OU-01 19 46269143 46269143 G A SIX5 Silent p.H612H 0.33 TCGA-L5-A4OU-01 19 47653535 47653535 T A SAE1 Nonsense_Mutation p.L96* 0.17 TCGA-L5-A4OU-01 19 50148340 50148340 C T SCAF1 Silent p.G19G 0.32 TCGA-L5-A4OU-01 19 50338429 50338429 C T MED25 Nonsense_Mutation p.R557* 0.35 TCGA-L5-A4OU-01 19 52034756 52034756 G A SIGLEC6 Missense_Mutation p.R29W 0.13 tolerated(0.08) benign(0.002) TCGA-L5-A4OU-01 19 52619801 52619801 T A ZNF616 Missense_Mutation p.I206L 0.14 tolerated(0.08) benign(0.183) TCGA-L5-A4OU-01 19 52941308 52941308 T C ZNF534 Missense_Mutation p.S212P 0.24 deleterious(0.01) benign(0.267) TCGA-L5-A4OU-01 19 53741702 53741702 T C ZNF677 Missense_Mutation p.N93S 0.14 deleterious(0.04) benign(0.012) TCGA-L5-A4OU-01 19 53747121 53747121 T C ZNF677 Missense_Mutation p.I15M 0.22 deleterious(0) probably_damaging(0.951) TCGA-L5-A4OU-01 19 56329312 56329312 G A NLRP11 Missense_Mutation p.R77C 0.36 deleterious(0.04) possibly_damaging(0.761) TCGA-L5-A4OU-01 19 7794236 7794236 A G CLEC4G 3'UTR 0.18 TCGA-L5-A4OU-01 1 102269726 102269726 C T OLFM3 3'UTR 0.44 TCGA-L5-A4OU-01 1 103491143 103491143 T G COL11A1 Missense_Mutation p.E308D 0.44 benign(0.073) TCGA-L5-A4OU-01 1 111216094 111216094 A T KCNA3 Silent p.G446G 0.06 TCGA-L5-A4OU-01 1 115576592 115576592 A C TSHB Splice_Site p.X55_splice 0.33 TCGA-L5-A4OU-01 1 115592676 115592676 A G TSPAN2 3'UTR 0.12 TCGA-L5-A4OU-01 1 144892482 144892482 G A PDE4DIP Intron 0.17 TCGA-L5-A4OU-01 1 159779891 159779891 A T FCRL6 Missense_Mutation p.Q298H 0.21 tolerated(0.12) possibly_damaging(0.656) TCGA-L5-A4OU-01 1 160105239 160105239 G A ATP1A2 Missense_Mutation p.V711M 0.45 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OU-01 1 161132109 161132109 G A USP21 Missense_Mutation p.R237Q 0.44 tolerated(0.05) possibly_damaging(0.572) TCGA-L5-A4OU-01 1 16461561 16461561 C T EPHA2 Missense_Mutation p.G518S 0.40 tolerated(0.12) benign(0.003) TCGA-L5-A4OU-01 1 19454777 19454777 T G UBR4 Missense_Mutation p.E3013D 0.08 benign(0.001) TCGA-L5-A4OU-01 1 205589938 205589938 T G ELK4 Missense_Mutation p.K79T 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A4OU-01 1 208200097 208200097 T C PLXNA2 3'UTR 0.56 TCGA-L5-A4OU-01 1 235827307 235827307 G A LYST Silent p.P3748P 0.51 TCGA-L5-A4OU-01 1 248039573 248039573 T C TRIM58 Silent p.L415L 0.11 TCGA-L5-A4OU-01 1 27190673 27190673 T C SFN 3'UTR 0.20 TCGA-L5-A4OU-01 1 28315141 28315141 G C EYA3 Missense_Mutation p.T482S 0.43 deleterious(0.02) probably_damaging(0.994) TCGA-L5-A4OU-01 1 55573052 55573052 T G USP24 Missense_Mutation p.E1541A 0.11 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OU-01 1 92327064 92327064 T A TGFBR3 Missense_Mutation p.I9F 0.39 deleterious(0.03) benign(0) TCGA-L5-A4OU-01 20 17389929 17389929 T G PCSK2 Missense_Mutation p.F189V 0.17 tolerated(0.83) possibly_damaging(0.744) TCGA-L5-A4OU-01 20 34535809 34535809 A C PHF20 3'UTR 0.29 TCGA-L5-A4OU-01 20 43927056 43927056 G T MATN4 Missense_Mutation p.R394S 0.33 probably_damaging(1) TCGA-L5-A4OU-01 20 51871026 51871026 T G TSHZ2 Silent p.S343S 0.12 TCGA-L5-A4OU-01 20 57009727 57009727 T G VAPB Missense_Mutation p.F94C 0.26 deleterious(0) possibly_damaging(0.892) TCGA-L5-A4OU-01 20 57429277 57429277 C T GNAS Silent p.D319D 0.32 TCGA-L5-A4OU-01 20 60913546 60913546 C T LAMA5 Silent p.G532G 0.03 TCGA-L5-A4OU-01 21 39755716 39755716 C T ERG Missense_Mutation p.R357H 0.09 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OU-01 22 21538168 21538168 G A FAM230B RNA 0.13 TCGA-L5-A4OU-01 22 24648561 24648561 C A POM121L9P RNA 0.33 TCGA-L5-A4OU-01 22 31723129 31723131 CTT - PATZ1 In_Frame_Del p.K604del 0.19 TCGA-L5-A4OU-01 22 36886088 36886088 A - FOXRED2 Frame_Shift_Del p.Q675Sfs*104 0.24 TCGA-L5-A4OU-01 22 37387198 37387198 A C TEX33 3'UTR 0.32 TCGA-L5-A4OU-01 22 46711967 46711967 T C GTSE1 Missense_Mutation p.S364P 0.22 tolerated(0.06) benign(0.067) TCGA-L5-A4OU-01 22 50962212 50962212 T C SCO2 Missense_Mutation p.N210S 0.34 tolerated(1) benign(0) TCGA-L5-A4OU-01 2 120725416 120725416 T A PTPN4 Silent p.A854A 0.20 TCGA-L5-A4OU-01 2 130900636 130900636 T C CCDC74B Intron 0.12 TCGA-L5-A4OU-01 2 136399242 136399242 T C R3HDM1 Silent p.S452S 0.17 TCGA-L5-A4OU-01 2 170062083 170062083 A C LRP2 Missense_Mutation p.F2541V 0.11 probably_damaging(0.967) TCGA-L5-A4OU-01 2 1795344 1795344 T G MYT1L 3'UTR 0.08 TCGA-L5-A4OU-01 2 190340080 190340080 A C WDR75 Missense_Mutation p.K810N 0.09 deleterious(0) probably_damaging(0.992) TCGA-L5-A4OU-01 2 198953695 198953695 C T PLCL1 Silent p.V943V 0.29 TCGA-L5-A4OU-01 2 213872531 213872531 G T IKZF2 Missense_Mutation p.N378K 0.16 tolerated(0.15) probably_damaging(0.993) TCGA-L5-A4OU-01 2 217234868 217234868 T G MARCH4 Missense_Mutation p.K39T 0.12 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-L5-A4OU-01 2 224463745 224463745 C T SCG2 Missense_Mutation p.V86I 0.18 tolerated(0.36) benign(0.009) TCGA-L5-A4OU-01 2 227860375 227860375 C A RHBDD1 3'UTR 0.30 TCGA-L5-A4OU-01 2 239976522 239976522 G T HDAC4 Missense_Mutation p.P999H 0.30 deleterious(0) benign(0.317) TCGA-L5-A4OU-01 2 27861756 27861756 A C GPN1 Missense_Mutation p.D206A 0.20 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OU-01 2 31567572 31567572 A G XDH Silent p.L1128L 0.43 TCGA-L5-A4OU-01 2 47136240 47136240 G A MCFD2 Missense_Mutation p.A24V 0.19 tolerated_low_confidence(0.16) benign(0.002) TCGA-L5-A4OU-01 2 54045062 54045062 T G ERLEC1 Missense_Mutation p.L470V 0.15 deleterious(0) probably_damaging(0.947) TCGA-L5-A4OU-01 2 67631322 67631322 T C ETAA1 Missense_Mutation p.L503P 0.20 tolerated(0.11) benign(0.117) TCGA-L5-A4OU-01 2 86364695 86364695 A T PTCD3 3'UTR 0.18 TCGA-L5-A4OU-01 2 90458635 90458635 C A CH17-132F21.1 Missense_Mutation p.A104E 0.02 TCGA-L5-A4OU-01 3 100976579 100976579 T C IMPG2 Missense_Mutation p.E316G 0.15 tolerated(0.08) possibly_damaging(0.886) TCGA-L5-A4OU-01 3 113729737 113729737 T G KIAA1407 Missense_Mutation p.K432T 0.13 deleterious(0) possibly_damaging(0.854) TCGA-L5-A4OU-01 3 119133553 119133553 C T ARHGAP31 Missense_Mutation p.A926V 0.11 tolerated(1) benign(0) TCGA-L5-A4OU-01 3 124739730 124739730 T C HEG1 Silent p.R386R 0.23 TCGA-L5-A4OU-01 3 131268914 131268914 T G CPNE4 Silent p.G393G 0.17 TCGA-L5-A4OU-01 3 13429807 13429807 T C NUP210 Missense_Mutation p.Y227C 0.28 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OU-01 3 136305744 136305744 A C STAG1 Intron 0.09 TCGA-L5-A4OU-01 3 142272730 142272730 A C ATR Silent p.A823A 0.13 TCGA-L5-A4OU-01 3 145790411 145790411 T C PLOD2 Silent p.K595K 0.16 TCGA-L5-A4OU-01 3 150387187 150387187 A C FAM194A Silent p.G465G 0.10 TCGA-L5-A4OU-01 3 151107893 151107893 T G MED12L Missense_Mutation p.F1825V 0.10 tolerated(0.22) benign(0.11) TCGA-L5-A4OU-01 3 151164487 151164487 A G IGSF10 Silent p.I1094I 0.11 TCGA-L5-A4OU-01 3 170612162 170612162 T G EIF5A2 Missense_Mutation p.E107D 0.15 tolerated(0.54) benign(0.002) TCGA-L5-A4OU-01 3 183824434 183824434 T G HTR3E Missense_Mutation p.F468V 0.08 deleterious(0) possibly_damaging(0.902) TCGA-L5-A4OU-01 3 33431457 33431457 A C UBP1 3'UTR 0.20 TCGA-L5-A4OU-01 3 39431019 39431019 T A SLC25A38 Missense_Mutation p.S35T 0.12 deleterious(0) possibly_damaging(0.79) TCGA-L5-A4OU-01 3 39555469 39555469 A C MOBP 3'UTR 0.28 TCGA-L5-A4OU-01 3 404935 404935 G A CHL1 Missense_Mutation p.R485K 0.20 tolerated(0.7) benign(0.039) TCGA-L5-A4OU-01 3 44612745 44612745 G A ZKSCAN7 Missense_Mutation p.G715R 0.08 deleterious(0.04) possibly_damaging(0.893) TCGA-L5-A4OU-01 3 46751325 46751325 C T TMIE 3'UTR 0.38 TCGA-L5-A4OU-01 3 50233299 50233299 G A GNAT1 3'UTR 0.12 TCGA-L5-A4OU-01 3 55503953 55503953 T C WNT5A 3'UTR 0.43 TCGA-L5-A4OU-01 3 58270864 58270864 A C ABHD6 Missense_Mutation p.K245T 0.20 tolerated(0.07) benign(0.274) TCGA-L5-A4OU-01 3 97887762 97887762 A - OR5H15 Frame_Shift_Del p.S74Hfs*4 0.11 TCGA-L5-A4OU-01 3 98251956 98251956 T C GPR15 Missense_Mutation p.L360P 0.12 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-L5-A4OU-01 4 100207959 100207959 A T ADH1A Intron 0.14 TCGA-L5-A4OU-01 4 103514703 103514703 G A NFKB1 Silent p.G396G 0.42 TCGA-L5-A4OU-01 4 110929354 110929354 C T EGF Missense_Mutation p.P1113L 0.12 tolerated(0.05) benign(0.013) TCGA-L5-A4OU-01 4 185038014 185038014 A G ENPP6 Missense_Mutation p.S284P 0.12 tolerated(0.13) possibly_damaging(0.588) TCGA-L5-A4OU-01 4 5838626 5838626 A G CRMP1 Silent p.L440L 0.15 TCGA-L5-A4OU-01 4 62937857 62937857 A T LPHN3 3'UTR 0.18 TCGA-L5-A4OU-01 4 65170930 65170930 A G TECRL Silent p.T228T 0.29 TCGA-L5-A4OU-01 4 68928601 68928601 A C TMPRSS11F Intron 0.12 TCGA-L5-A4OU-01 4 73941408 73941408 C T ANKRD17 3'UTR 0.33 TCGA-L5-A4OU-01 4 75938258 75938258 A G PARM1 Missense_Mutation p.T223A 0.41 tolerated(1) benign(0.003) TCGA-L5-A4OU-01 5 127487078 127487079 - A SLC12A2 Frame_Shift_Ins p.P754Tfs*35 0.17 TCGA-L5-A4OU-01 5 140236755 140236755 T C PCDHA10 Silent p.S374S 0.09 TCGA-L5-A4OU-01 5 140530084 140530084 T G PCDHB6 Missense_Mutation p.D82E 0.08 deleterious(0.05) benign(0.178) TCGA-L5-A4OU-01 5 140589229 140589229 G A PCDHB12 Silent p.K250K 0.10 TCGA-L5-A4OU-01 5 145838890 145838890 G A TCERG1 Silent p.Q294Q 0.24 TCGA-L5-A4OU-01 5 147040585 147040585 G A JAKMIP2 Missense_Mutation p.R185W 0.14 deleterious(0) probably_damaging(0.992) TCGA-L5-A4OU-01 5 149499620 149499620 C T PDGFRB Missense_Mutation p.D885N 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A4OU-01 5 150911197 150911197 G A FAT2 Silent p.R3254R 0.18 TCGA-L5-A4OU-01 5 169508960 169508960 A G DOCK2 Missense_Mutation p.K1801R 0.12 tolerated_low_confidence(0.08) benign(0.169) TCGA-L5-A4OU-01 5 170610191 170610191 T C RANBP17 Missense_Mutation p.L629P 0.21 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OU-01 5 17354477 17354477 G A CTD-2139B15.2 RNA 0.20 TCGA-L5-A4OU-01 5 179036558 179036558 C T RUFY1 3'UTR 0.09 TCGA-L5-A4OU-01 5 54329903 54329903 G C GZMK 3'UTR 0.29 TCGA-L5-A4OU-01 5 59481429 59481429 G A PDE4D 5'UTR 0.08 TCGA-L5-A4OU-01 5 80742690 80742690 C T SSBP2 Missense_Mutation p.A259T 0.12 deleterious(0.04) possibly_damaging(0.892) TCGA-L5-A4OU-01 5 86645099 86645099 C T RASA1 Missense_Mutation p.R391W 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-L5-A4OU-01 5 94918845 94918845 T G ARSK Silent p.S214S 0.10 TCGA-L5-A4OU-01 5 95236437 95236437 G A ELL2 Missense_Mutation p.S305F 0.11 deleterious(0.03) possibly_damaging(0.6) TCGA-L5-A4OU-01 5 98217809 98217809 C T CHD1 Missense_Mutation p.V913I 0.11 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OU-01 6 10955446 10955446 G A SYCP2L Silent p.L684L 0.20 TCGA-L5-A4OU-01 6 112397266 112397266 T G TUBE1 Missense_Mutation p.K229T 0.19 deleterious(0.03) benign(0.215) TCGA-L5-A4OU-01 6 128151008 128151008 C T THEMIS Missense_Mutation p.G108R 0.33 deleterious(0.04) benign(0.323) TCGA-L5-A4OU-01 6 144033198 144033198 C T PHACTR2 Missense_Mutation p.T31I 0.09 tolerated(0.15) benign(0.326) TCGA-L5-A4OU-01 6 146351241 146351241 T G GRM1 Silent p.T196T 0.16 TCGA-L5-A4OU-01 6 151265637 151265637 A G MTHFD1L Missense_Mutation p.T486A 0.11 deleterious(0) probably_damaging(1) TCGA-L5-A4OU-01 6 152129213 152129213 G A ESR1 Missense_Mutation p.E56K 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-L5-A4OU-01 6 24843223 24843223 C A FAM65B Missense_Mutation p.C596F 0.12 tolerated(0.67) benign(0.056) TCGA-L5-A4OU-01 6 27805943 27805943 G C HIST1H2AK Missense_Mutation p.L59V 0.16 deleterious_low_confidence(0.03) possibly_damaging(0.743) TCGA-L5-A4OU-01 6 27858512 27858512 T A HIST1H3J Missense_Mutation p.Q20L 0.07 deleterious_low_confidence(0) possibly_damaging(0.565) TCGA-L5-A4OU-01 6 30955326 30955326 T G MUC21 Silent p.T458T 0.07 TCGA-L5-A4OU-01 6 31797421 31797421 C G HSPA1B Missense_Mutation p.A565G 0.11 tolerated_low_confidence(0.18) benign(0.002) TCGA-L5-A4OU-01 6 34494067 34494067 C A PACSIN1 5'UTR 0.13 TCGA-L5-A4OU-01 6 37626132 37626132 C T MDGA1 Missense_Mutation p.E91K 0.13 deleterious(0.02) probably_damaging(0.995) TCGA-L5-A4OU-01 6 46967835 46967835 T A GPR110 3'UTR 0.25 TCGA-L5-A4OU-01 6 52054106 52054106 C T IL17A 3'UTR 0.42 TCGA-L5-A4OU-01 7 100730995 100730995 G A TRIM56 Silent p.G134G 0.10 TCGA-L5-A4OU-01 7 102066961 102066961 T G PRKRIP1 3'UTR 0.08 TCGA-L5-A4OU-01 7 128767493 128767493 G A RP11-286H14.4 RNA 0.23 TCGA-L5-A4OU-01 7 141427048 141427051 AGAT - WEE2 Intron 0.39 TCGA-L5-A4OU-01 7 142168542 142168542 C T TRBV5-4 Missense_Mutation p.G61R 0.24 deleterious(0.01) possibly_damaging(0.618) TCGA-L5-A4OU-01 7 16745849 16745849 G A BZW2 3'UTR 0.26 TCGA-L5-A4OU-01 7 37779993 37779993 A G GPR141 5'UTR 0.09 TCGA-L5-A4OU-01 7 48431574 48431574 A G ABCA13 Missense_Mutation p.K3904R 0.08 benign(0.083) TCGA-L5-A4OU-01 7 56007556 56007556 C T ZNF713 Missense_Mutation p.P384S 0.33 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OU-01 7 66006391 66006391 C T GS1-124K5.11 RNA 0.10 TCGA-L5-A4OU-01 7 82538208 82538208 A G PCLO Silent p.S4474S 0.14 TCGA-L5-A4OU-01 7 82595624 82595624 T C PCLO Silent p.Q1160Q 0.09 TCGA-L5-A4OU-01 7 82791691 82791691 G A PCLO Missense_Mutation p.P73L 0.26 unknown(0) TCGA-L5-A4OU-01 7 90838963 90838963 A G CDK14 3'UTR 0.05 TCGA-L5-A4OU-01 7 98254301 98254301 C T NPTX2 Silent p.Y237Y 0.11 TCGA-L5-A4OU-01 7 99802263 99802263 T A STAG3 Missense_Mutation p.L939Q 0.04 deleterious(0.03) possibly_damaging(0.818) TCGA-L5-A4OU-01 8 105080825 105080825 A C RIMS2 Intron 0.13 TCGA-L5-A4OU-01 8 144295102 144295102 C T GPIHBP1 5'UTR 0.29 TCGA-L5-A4OU-01 8 144776365 144776365 T C ZNF707 Missense_Mutation p.S261P 0.17 tolerated(0.33) benign(0.001) TCGA-L5-A4OU-01 8 144991310 144991310 G A PLEC Missense_Mutation p.L4364F 0.20 probably_damaging(0.999) TCGA-L5-A4OU-01 8 39496040 39496040 A T ADAM18 Missense_Mutation p.K295I 0.15 tolerated(0.06) benign(0.034) TCGA-L5-A4OU-01 8 39645738 39645738 C T ADAM2 Silent p.L225L 0.17 TCGA-L5-A4OU-01 8 42023210 42023210 G A AP3M2 Intron 0.28 TCGA-L5-A4OU-01 8 74705737 74705737 A G UBE2W 3'UTR 0.21 TCGA-L5-A4OU-01 8 89052465 89052465 T G MMP16 3'UTR 0.12 TCGA-L5-A4OU-01 8 95384386 95384386 A C RAD54B 3'UTR 0.11 TCGA-L5-A4OU-01 9 125562456 125562456 A C OR1K1 Missense_Mutation p.T19P 0.11 tolerated(0.22) benign(0.221) TCGA-L5-A4OU-01 9 135447805 135447805 G A C9orf171 Missense_Mutation p.E291K 0.12 tolerated(0.33) benign(0.173) TCGA-L5-A4OU-01 9 137704471 137704471 C A COL5A1 Silent p.G1255G 0.34 TCGA-L5-A4OU-01 9 139342035 139342035 T C SEC16A Missense_Mutation p.Y2182C 0.21 deleterious(0) possibly_damaging(0.893) TCGA-L5-A4OU-01 9 17796111 17796111 C - SH3GL2 3'UTR 0.22 TCGA-L5-A4OU-01 9 20770221 20770221 T G FOCAD Missense_Mutation p.V297G 0.22 deleterious(0.02) benign(0.021) TCGA-L5-A4OU-01 9 37919868 37919868 C T SHB Missense_Mutation p.G494R 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A4OU-01 9 39149870 39149870 A C CNTNAP3 Missense_Mutation p.L528V 0.11 tolerated(0.08) benign(0.028) TCGA-L5-A4OU-01 9 72046173 72046173 G A APBA1 3'UTR 0.21 TCGA-L5-A4OU-01 9 75431120 75431120 T C TMC1 Missense_Mutation p.M586T 0.14 deleterious(0.02) possibly_damaging(0.53) TCGA-L5-A4OU-01 9 79318714 79318714 T G PRUNE2 Missense_Mutation p.E2605D 0.07 tolerated(0.08) benign(0.025) TCGA-L5-A4OU-01 9 80923414 80923414 T C PSAT1 Missense_Mutation p.F219L 0.16 tolerated(0.4) benign(0.089) TCGA-L5-A4OU-01 9 84235427 84235427 G A TLE1 Missense_Mutation p.R214C 0.14 tolerated(0.06) possibly_damaging(0.734) TCGA-L5-A4OU-01 9 91610671 91610671 T C C9orf47 3'UTR 0.21 TCGA-L5-A4OU-01 X 131348424 131348424 T C RAP2C Silent p.K108K 0.22 TCGA-L5-A4OU-01 X 49161348 49161348 C T GAGE10 Nonsense_Mutation p.R4* 0.27 TCGA-L5-A4OU-01 X 50338081 50338081 T G SHROOM4 3'UTR 0.40 TCGA-L5-A4OU-01 X 5821829 5821829 G A NLGN4X Missense_Mutation p.T297I 0.50 deleterious(0) probably_damaging(1) TCGA-L5-A4OU-01 X 78012111 78012111 T G LPAR4 3'UTR 0.55 TCGA-L5-A4OW-01 10 118236293 118236293 A G PNLIPRP3 Silent p.A434A 0.29 TCGA-L5-A4OW-01 10 132944769 132944769 T G TCERG1L Missense_Mutation p.T397P 0.28 tolerated(0.11) benign(0.022) TCGA-L5-A4OW-01 10 18270308 18270308 A T SLC39A12 Missense_Mutation p.E331V 0.22 deleterious(0) probably_damaging(0.989) TCGA-L5-A4OW-01 10 38343629 38343629 G A ZNF33A Missense_Mutation p.V193I 0.08 tolerated(0.37) benign(0.006) TCGA-L5-A4OW-01 10 42832803 42832803 T C RP11-313J2.1 RNA 0.29 TCGA-L5-A4OW-01 10 50171915 50171915 A C WDFY4 Missense_Mutation p.N2751T 0.49 deleterious(0.01) possibly_damaging(0.868) TCGA-L5-A4OW-01 10 52390895 52390895 C A RP11-50E11.3 RNA 0.17 TCGA-L5-A4OW-01 10 60562964 60562964 G A BICC1 Missense_Mutation p.A715T 0.27 tolerated(0.48) benign(0.146) TCGA-L5-A4OW-01 10 81373718 81373718 G C SFTPA1 Missense_Mutation p.R214P 0.27 tolerated(0.11) possibly_damaging(0.629) TCGA-L5-A4OW-01 11 103870968 103870968 G T PDGFD Missense_Mutation p.T47K 0.30 tolerated(0.13) probably_damaging(0.959) TCGA-L5-A4OW-01 11 114183177 114183177 G C NNMT Missense_Mutation p.R258T 0.40 deleterious(0.01) benign(0.155) TCGA-L5-A4OW-01 11 123676607 123676607 A T OR6M1 Missense_Mutation p.F151I 0.14 deleterious(0.02) probably_damaging(0.991) TCGA-L5-A4OW-01 11 123894160 123894160 T G OR10G9 Silent p.T147T 0.10 TCGA-L5-A4OW-01 11 124120732 124120732 T C OR8G1 Missense_Mutation p.F104L 0.15 deleterious_low_confidence(0) benign(0.315) TCGA-L5-A4OW-01 11 17415923 17415923 C T ABCC8 Missense_Mutation p.E1479K 0.08 deleterious(0.02) benign(0.094) TCGA-L5-A4OW-01 11 18737085 18737085 C T IGSF22 Silent p.L475L 0.05 TCGA-L5-A4OW-01 11 18737090 18737090 C G IGSF22 Missense_Mutation p.E474Q 0.05 tolerated(0.09) probably_damaging(0.932) TCGA-L5-A4OW-01 11 3661350 3661350 C T ART5 Silent p.S103S 0.23 TCGA-L5-A4OW-01 11 43603026 43603026 G A MIR129-2 RNA 0.22 TCGA-L5-A4OW-01 11 46001444 46001444 G A PHF21A Missense_Mutation p.P76L 0.37 deleterious_low_confidence(0.01) benign(0.23) TCGA-L5-A4OW-01 11 46726758 46726758 G A ZNF408 Missense_Mutation p.R503Q 0.45 tolerated(0.08) probably_damaging(0.998) TCGA-L5-A4OW-01 11 49208204 49208204 C A FOLH1 Nonsense_Mutation p.G211* 0.13 TCGA-L5-A4OW-01 11 5247854 5247854 T C HBB Missense_Mutation p.S90G 0.25 deleterious(0) possibly_damaging(0.677) TCGA-L5-A4OW-01 11 5254175 5254175 C A HBD 3'UTR 0.13 TCGA-L5-A4OW-01 11 55322473 55322473 A C OR4C15 Missense_Mutation p.M231L 0.17 tolerated_low_confidence(0.15) benign(0.001) TCGA-L5-A4OW-01 11 5536298 5536298 C A UBQLNL Missense_Mutation p.Q458H 0.18 deleterious(0) possibly_damaging(0.641) TCGA-L5-A4OW-01 11 55587684 55587684 T G OR5D18 Silent p.T193T 0.19 TCGA-L5-A4OW-01 11 55594761 55594761 T G OR5L2 Missense_Mutation p.L23V 0.40 tolerated(0.12) possibly_damaging(0.459) TCGA-L5-A4OW-01 11 55999981 55999981 A G OR5T2 Silent p.S227S 0.12 TCGA-L5-A4OW-01 11 60609946 60609946 C T CCDC86 Nonsense_Mutation p.Q117* 0.41 TCGA-L5-A4OW-01 11 63970376 63970376 C T STIP1 Missense_Mutation p.P425L 0.10 deleterious(0) probably_damaging(0.91) TCGA-L5-A4OW-01 11 65421986 65421986 C A RELA Missense_Mutation p.A507S 0.38 tolerated_low_confidence(1) benign(0.003) TCGA-L5-A4OW-01 11 65486590 65486590 C T KAT5 Missense_Mutation p.R527W 0.17 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OW-01 11 67012683 67012683 G A KDM2A Silent p.K529K 0.40 TCGA-L5-A4OW-01 11 78565358 78565358 A C TENM4 Missense_Mutation p.F491C 0.11 deleterious(0) probably_damaging(0.91) TCGA-L5-A4OW-01 11 9087496 9087496 C T SCUBE2 Silent p.E264E 0.23 TCGA-L5-A4OW-01 11 94279833 94279833 G A FUT4 3'UTR 0.15 TCGA-L5-A4OW-01 12 110252313 110252313 G A TRPV4 Missense_Mutation p.P97S 0.56 deleterious(0.03) benign(0.057) TCGA-L5-A4OW-01 12 11420304 11420304 G A PRB3 Missense_Mutation p.P251L 0.06 deleterious(0.01) unknown(0) TCGA-L5-A4OW-01 12 129566348 129566348 C G TMEM132D Missense_Mutation p.G627R 0.43 tolerated(0.08) possibly_damaging(0.481) TCGA-L5-A4OW-01 12 132683738 132683738 C G GALNT9 Missense_Mutation p.C127S 0.10 deleterious(0) probably_damaging(0.976) TCGA-L5-A4OW-01 12 13364407 13364408 - T EMP1 5'UTR 0.37 TCGA-L5-A4OW-01 12 40921494 40921494 T C MUC19 Intron 0.48 TCGA-L5-A4OW-01 12 41337803 41337803 C T CNTN1 Missense_Mutation p.T505M 0.70 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OW-01 12 48142277 48142277 C T RAPGEF3 Silent p.L401L 0.57 TCGA-L5-A4OW-01 12 49521906 49521906 C T TUBA1B Silent p.L397L 0.15 TCGA-L5-A4OW-01 12 5154236 5154236 C T KCNA5 Missense_Mutation p.S308F 0.28 tolerated(0.18) benign(0.049) TCGA-L5-A4OW-01 12 6679413 6679413 C T CHD4 3'UTR 0.29 TCGA-L5-A4OW-01 12 9265954 9265954 A C A2M Splice_Site p.X90_splice 0.47 TCGA-L5-A4OW-01 13 19997141 19997141 T C TPTE2 3'UTR 0.08 TCGA-L5-A4OW-01 13 20660177 20660177 C T ZMYM2 3'UTR 0.40 TCGA-L5-A4OW-01 13 45008649 45008649 C G TSC22D1 3'UTR 0.11 TCGA-L5-A4OW-01 13 66877302 66877302 T G PCDH9 3'UTR 0.71 TCGA-L5-A4OW-01 13 84453910 84453910 C A SLITRK1 Missense_Mutation p.C578F 0.24 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OW-01 13 99047715 99047715 C G FARP1 Missense_Mutation p.P467A 0.13 tolerated(0.24) benign(0.01) TCGA-L5-A4OW-01 14 101347476 101347476 T G RTL1 Missense_Mutation p.N1217T 0.32 tolerated_low_confidence(0.72) benign(0.001) TCGA-L5-A4OW-01 14 101521822 101521823 TT - MIR485 RNA 0.25 TCGA-L5-A4OW-01 14 105618517 105618517 G A JAG2 Silent p.G300G 0.20 TCGA-L5-A4OW-01 14 105959065 105959065 G T C14orf80 Silent p.L193L 0.20 TCGA-L5-A4OW-01 14 20295732 20295732 A C OR4N2 Missense_Mutation p.N42T 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OW-01 14 73029207 73029207 C A RGS6 3'Flank 0.64 TCGA-L5-A4OW-01 14 76091048 76091048 C T FLVCR2 Missense_Mutation p.A302V 0.29 tolerated(0.69) benign(0.002) TCGA-L5-A4OW-01 14 96871175 96871175 A C AK7 Missense_Mutation p.M126L 0.38 deleterious(0.03) benign(0) TCGA-L5-A4OW-01 15 24926564 24926564 C A NPAP1 3'UTR 0.43 TCGA-L5-A4OW-01 15 25940173 25940173 A C ATP10A Missense_Mutation p.S961A 0.38 tolerated(0.24) benign(0.016) TCGA-L5-A4OW-01 15 25959021 25959021 A G ATP10A Missense_Mutation p.V715A 0.20 tolerated(0.16) benign(0.007) TCGA-L5-A4OW-01 15 34437668 34437668 T C KATNBL1 Silent p.Q271Q 0.15 TCGA-L5-A4OW-01 15 35530031 35530031 G A ANP32AP1 RNA 0.43 TCGA-L5-A4OW-01 15 40623843 40623843 C T C15orf52 3'Flank 0.32 TCGA-L5-A4OW-01 15 43545067 43545067 T C TGM5 Missense_Mutation p.N251S 0.23 tolerated(1) benign(0.136) TCGA-L5-A4OW-01 15 48052049 48052049 G A SEMA6D Silent p.L18L 0.10 TCGA-L5-A4OW-01 15 48063701 48063701 T C SEMA6D Silent p.L981L 0.41 TCGA-L5-A4OW-01 15 63088404 63088404 G A TLN2 Missense_Mutation p.G1988R 0.09 deleterious(0) probably_damaging(0.969) TCGA-L5-A4OW-01 15 64066901 64066901 G A HERC1 Missense_Mutation p.R308C 0.13 probably_damaging(0.943) TCGA-L5-A4OW-01 15 74560733 74560733 C T CCDC33 Silent p.Y160Y 0.06 TCGA-L5-A4OW-01 15 88522553 88522553 A C NTRK3 Intron 0.33 TCGA-L5-A4OW-01 15 88799249 88799249 G A NTRK3 Missense_Mutation p.R46W 0.06 deleterious(0.02) benign(0.216) TCGA-L5-A4OW-01 15 92663743 92663743 G T SLCO3A1 Missense_Mutation p.C353F 0.40 tolerated(0.1) probably_damaging(0.999) TCGA-L5-A4OW-01 16 20489909 20489909 T A ACSM2A Missense_Mutation p.D397E 0.13 tolerated(1) benign(0.001) TCGA-L5-A4OW-01 16 31447639 31447639 C T ZNF843 Missense_Mutation p.V178M 0.47 deleterious_low_confidence(0) possibly_damaging(0.791) TCGA-L5-A4OW-01 16 47117434 47117434 G A NETO2 Missense_Mutation p.R426W 0.16 deleterious(0.03) benign(0.189) TCGA-L5-A4OW-01 16 626145 626145 C T PIGQ Missense_Mutation p.T278M 0.22 tolerated(0.32) benign(0.053) TCGA-L5-A4OW-01 16 68260696 68260696 T G NFATC3 3'UTR 0.05 TCGA-L5-A4OW-01 16 683884 683884 C T WFIKKN1 Missense_Mutation p.P492S 0.21 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OW-01 16 68394951 68394951 G A SMPD3 3'UTR 0.38 TCGA-L5-A4OW-01 16 69385482 69385482 A T TMED6 Missense_Mutation p.F59I 0.20 deleterious(0) possibly_damaging(0.904) TCGA-L5-A4OW-01 16 743482 743482 C T FBXL16 3'UTR 0.11 TCGA-L5-A4OW-01 16 81249880 81249880 C T PKD1L2 Missense_Mutation p.A145T 0.11 tolerated(0.48) benign(0.004) TCGA-L5-A4OW-01 16 88501491 88501491 G A ZNF469 Missense_Mutation p.R2510K 0.11 benign(0.01) TCGA-L5-A4OW-01 17 19216546 19216546 C T EPN2 Silent p.G367G 0.54 TCGA-L5-A4OW-01 17 3432156 3432156 G A TRPV3 Missense_Mutation p.S459L 0.14 deleterious(0.01) probably_damaging(0.925) TCGA-L5-A4OW-01 17 37826276 37826276 G A PNMT Silent p.Q161Q 0.44 TCGA-L5-A4OW-01 17 37900347 37900347 C T GRB7 Missense_Mutation p.P253S 0.03 deleterious(0) probably_damaging(1) TCGA-L5-A4OW-01 17 39262065 39262065 C G KRTAP4-9 Missense_Mutation p.S142C 0.05 deleterious(0.02) unknown(0) TCGA-L5-A4OW-01 17 39262140 39262140 C T KRTAP4-9 Missense_Mutation p.S167F 0.05 deleterious(0.03) unknown(0) TCGA-L5-A4OW-01 17 39739836 39739836 G C KRT14 Missense_Mutation p.N340K 0.20 deleterious(0) possibly_damaging(0.491) TCGA-L5-A4OW-01 17 39742711 39742711 G A KRT14 Silent p.L126L 0.21 TCGA-L5-A4OW-01 17 40343180 40343180 A C GHDC Missense_Mutation p.L313R 0.21 tolerated(0.06) probably_damaging(0.987) TCGA-L5-A4OW-01 17 43922683 43922683 G A SPPL2C Silent p.Q137Q 0.58 TCGA-L5-A4OW-01 17 5072078 5072078 G A USP6 Missense_Mutation p.R1082Q 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A4OW-01 17 5085463 5085463 G A ZNF594 Nonsense_Mutation p.Q697* 0.06 TCGA-L5-A4OW-01 17 58024589 58024589 C T RPS6KB1 3'UTR 0.15 TCGA-L5-A4OW-01 17 59942788 59942788 G C INTS2 3'UTR 0.39 TCGA-L5-A4OW-01 17 62018150 62018150 A T SCN4A Missense_Mutation p.V1831D 0.50 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-L5-A4OW-01 17 65941986 65941986 C T BPTF Nonsense_Mutation p.Q2388* 0.38 TCGA-L5-A4OW-01 17 6801973 6801973 T C AC027763.2 Intron 0.07 TCGA-L5-A4OW-01 17 73494368 73494368 G A KIAA0195 Missense_Mutation p.R1201H 0.37 tolerated(0.14) benign(0.009) TCGA-L5-A4OW-01 17 7578431 7578431 G A TP53 Nonsense_Mutation p.Q167* 0.56 TCGA-L5-A4OW-01 17 9792806 9792806 G A GLP2R Silent p.S482S 0.11 TCGA-L5-A4OW-01 18 10784843 10784843 G A PIEZO2 Missense_Mutation p.R811W 0.05 tolerated(0.06) possibly_damaging(0.844) TCGA-L5-A4OW-01 18 22805695 22805695 T G ZNF521 Missense_Mutation p.E729D 0.09 deleterious(0) probably_damaging(0.965) TCGA-L5-A4OW-01 18 347200 347200 G A COLEC12 Missense_Mutation p.A141V 0.25 tolerated(0.29) benign(0.013) TCGA-L5-A4OW-01 18 61568991 61568991 T G SERPINB2 Missense_Mutation p.L185V 0.04 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OW-01 18 65179356 65179356 T G DSEL Missense_Mutation p.K840N 0.20 tolerated(0.19) benign(0.017) TCGA-L5-A4OW-01 18 6914961 6914961 T G ARHGAP28 3'UTR 0.23 TCGA-L5-A4OW-01 18 6961752 6961752 G A LAMA1 Missense_Mutation p.R2487W 0.14 deleterious(0.01) possibly_damaging(0.902) TCGA-L5-A4OW-01 19 12637330 12637330 T A ZNF564 Missense_Mutation p.K531I 0.17 deleterious(0) possibly_damaging(0.733) TCGA-L5-A4OW-01 19 1268245 1268245 C T CIRBP Intron 0.25 TCGA-L5-A4OW-01 19 15342188 15342188 G T EPHX3 Missense_Mutation p.L117I 0.13 deleterious(0.02) benign(0.032) TCGA-L5-A4OW-01 19 19639008 19639008 C T NDUFA13 3'Flank 0.41 TCGA-L5-A4OW-01 19 22156826 22156826 C A ZNF208 Missense_Mutation p.G337V 0.18 deleterious(0.02) probably_damaging(0.979) TCGA-L5-A4OW-01 19 2291315 2291315 C T LINGO3 Missense_Mutation p.R154Q 0.18 tolerated(0.38) benign(0.013) TCGA-L5-A4OW-01 19 22940992 22940992 A G ZNF99 Silent p.A573A 0.16 TCGA-L5-A4OW-01 19 30936157 30936157 A C ZNF536 Missense_Mutation p.K563T 0.22 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OW-01 19 32974156 32974156 C T DPY19L3 3'UTR 0.39 TCGA-L5-A4OW-01 19 39229076 39229076 G A CAPN12 Missense_Mutation p.T291M 0.28 deleterious(0.01) possibly_damaging(0.753) TCGA-L5-A4OW-01 19 40276514 40276514 C T LEUTX Silent p.D82D 0.07 TCGA-L5-A4OW-01 19 41289943 41289943 C T RAB4B Silent p.V131V 0.42 TCGA-L5-A4OW-01 19 45649041 45649041 G A PPP1R37 Missense_Mutation p.S576N 0.40 tolerated(0.2) benign(0.213) TCGA-L5-A4OW-01 19 45977766 45977766 G A FOSB 3'UTR 0.25 TCGA-L5-A4OW-01 19 46998401 46998401 G A PNMAL2 Missense_Mutation p.R108C 0.36 deleterious(0.02) probably_damaging(0.989) TCGA-L5-A4OW-01 19 47589768 47589768 C A ZC3H4 Missense_Mutation p.R248M 0.30 probably_damaging(0.982) TCGA-L5-A4OW-01 19 50826891 50826891 G A KCNC3 Missense_Mutation p.T440M 0.07 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OW-01 19 51410265 51410265 T G KLK4 Missense_Mutation p.Q230H 0.21 deleterious(0.01) possibly_damaging(0.864) TCGA-L5-A4OW-01 19 51411862 51411862 C T KLK4 Missense_Mutation p.V150I 0.29 tolerated(0.23) benign(0.393) TCGA-L5-A4OW-01 19 52130727 52130727 G T SIGLEC5 Missense_Mutation p.L424M 0.40 deleterious(0.01) probably_damaging(0.977) TCGA-L5-A4OW-01 19 52793491 52793491 T G ZNF766 Silent p.L149L 0.20 TCGA-L5-A4OW-01 19 53613064 53613064 T A ZNF415 Missense_Mutation p.K78N 0.06 tolerated(0.08) benign(0.003) TCGA-L5-A4OW-01 19 5641936 5641936 G A SAFB Silent p.P175P 0.21 TCGA-L5-A4OW-01 19 59073356 59073356 A G MZF1 3'UTR 0.22 TCGA-L5-A4OW-01 19 8161451 8161451 G A FBN3 Missense_Mutation p.R1806W 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-L5-A4OW-01 19 9064310 9064310 G T MUC16 Silent p.P7712P 0.17 TCGA-L5-A4OW-01 1 100681541 100681541 T G DBT Missense_Mutation p.K257T 0.51 tolerated(0.33) benign(0) TCGA-L5-A4OW-01 1 115263192 115263192 G C CSDE1 Missense_Mutation p.R720G 0.07 deleterious(0) benign(0.445) TCGA-L5-A4OW-01 1 11562884 11562884 G A PTCHD2 Missense_Mutation p.E416K 0.12 tolerated(0.27) possibly_damaging(0.856) TCGA-L5-A4OW-01 1 12888666 12888666 T G PRAMEF11 Splice_Site 0.13 TCGA-L5-A4OW-01 1 12939574 12939574 A C PRAMEF4 Missense_Mutation p.L410V 0.04 deleterious(0) benign(0.134) TCGA-L5-A4OW-01 1 147230991 147230991 C A GJA5 Missense_Mutation p.G119V 0.25 tolerated(0.09) benign(0.011) TCGA-L5-A4OW-01 1 152681853 152681853 C A LCE4A 3'UTR 0.07 TCGA-L5-A4OW-01 1 158324300 158324300 T A CD1E Silent p.T64T 0.07 TCGA-L5-A4OW-01 1 182443459 182443459 G A RGSL1 Missense_Mutation p.D405N 0.28 deleterious(0) probably_damaging(0.952) TCGA-L5-A4OW-01 1 201869675 201869675 G A LMOD1 Missense_Mutation p.R156W 0.07 probably_damaging(0.993) TCGA-L5-A4OW-01 1 207755263 207755263 G T CR1 Silent p.G1739G 0.15 TCGA-L5-A4OW-01 1 21076257 21076257 T A HP1BP3 Missense_Mutation p.Y367F 0.16 tolerated(0.21) possibly_damaging(0.719) TCGA-L5-A4OW-01 1 214171551 214171551 A C PROX1 Missense_Mutation p.E558A 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A4OW-01 1 228432106 228432106 G A OBSCN Silent p.V1197V 0.05 TCGA-L5-A4OW-01 1 230458393 230458393 C T PGBD5 3'Flank 0.06 TCGA-L5-A4OW-01 1 233512219 233512219 T A MLK4 Missense_Mutation p.L624I 0.18 deleterious(0.03) benign(0.033) TCGA-L5-A4OW-01 1 237865317 237865317 G A RYR2 Missense_Mutation p.S3136N 0.28 possibly_damaging(0.582) TCGA-L5-A4OW-01 1 247588567 247588567 C A NLRP3 Missense_Mutation p.L608M 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OW-01 1 33778163 33778163 C T A3GALT2 Missense_Mutation p.V46I 0.10 tolerated(0.61) benign(0.004) TCGA-L5-A4OW-01 1 36320555 36320555 G A AGO4 3'UTR 0.21 TCGA-L5-A4OW-01 1 42049977 42049977 G A HIVEP3 Silent p.F164F 0.37 TCGA-L5-A4OW-01 1 62910645 62910645 C T USP1 Missense_Mutation p.P265L 0.19 tolerated(0.28) benign(0.005) TCGA-L5-A4OW-01 1 67796382 67796382 G A IL12RB2 Missense_Mutation p.D283N 0.17 tolerated(0.19) benign(0.026) TCGA-L5-A4OW-01 1 70339158 70339158 G A LRRC7 Intron 0.44 TCGA-L5-A4OW-01 1 70446102 70446102 G T LRRC7 Missense_Mutation p.W213L 0.29 deleterious(0) benign(0.086) TCGA-L5-A4OW-01 1 79125009 79125009 G A IFI44 Missense_Mutation p.E285K 0.38 tolerated(1) benign(0) TCGA-L5-A4OW-01 1 8398028 8398028 G A SLC45A1 Missense_Mutation p.A584T 0.16 deleterious(0.05) possibly_damaging(0.478) TCGA-L5-A4OW-01 1 85136405 85136405 G A SSX2IP Missense_Mutation p.S46L 0.29 tolerated(0.3) benign(0.222) TCGA-L5-A4OW-01 20 23965841 23965841 C T GGTLC1 3'UTR 0.09 TCGA-L5-A4OW-01 20 29960724 29960724 A T DEFB118 Silent p.G41G 0.20 TCGA-L5-A4OW-01 20 31473427 31473427 C T EFCAB8 Missense_Mutation p.S183L 0.49 TCGA-L5-A4OW-01 20 35769704 35769704 A C MROH8 Missense_Mutation p.F477C 0.12 deleterious(0) probably_damaging(0.982) TCGA-L5-A4OW-01 20 39794968 39794968 G A PLCG1 Missense_Mutation p.R645H 0.51 deleterious(0) possibly_damaging(0.835) TCGA-L5-A4OW-01 20 43118107 43118107 C T TTPAL Silent p.P318P 0.17 TCGA-L5-A4OW-01 20 54978617 54978617 G A CSTF1 Missense_Mutation p.S377N 0.10 tolerated(0.13) benign(0.185) TCGA-L5-A4OW-01 20 61167942 61167942 C T C20orf166 3'UTR 0.07 TCGA-L5-A4OW-01 21 28296161 28296161 A C ADAMTS5 3'UTR 0.26 TCGA-L5-A4OW-01 21 32554886 32554886 A T TIAM1 Missense_Mutation p.D913E 0.23 tolerated(0.35) benign(0.001) TCGA-L5-A4OW-01 21 34614208 34614208 A C IFNAR2 5'UTR 0.32 TCGA-L5-A4OW-01 21 39673399 39673399 G C KCNJ15 3'UTR 0.14 TCGA-L5-A4OW-01 22 19119927 19119927 G A TSSK2 Missense_Mutation p.E339K 0.29 tolerated_low_confidence(0.1) probably_damaging(0.986) TCGA-L5-A4OW-01 22 19121821 19121821 C T DGCR14 Missense_Mutation p.S440N 0.08 tolerated(0.33) benign(0.031) TCGA-L5-A4OW-01 22 28379105 28379105 C T TTC28 Missense_Mutation p.G2184S 0.23 tolerated_low_confidence(0.15) benign(0.003) TCGA-L5-A4OW-01 22 30416172 30416172 G A MTMR3 Missense_Mutation p.V842M 0.18 tolerated_low_confidence(1) benign(0.006) TCGA-L5-A4OW-01 22 31859732 31859732 C T EIF4ENIF1 Missense_Mutation p.D174N 0.10 tolerated(0.27) benign(0.425) TCGA-L5-A4OW-01 22 32479071 32479071 G A SLC5A1 Silent p.A198A 0.11 TCGA-L5-A4OW-01 22 40728557 40728557 G C TNRC6B 3'UTR 0.15 TCGA-L5-A4OW-01 22 43606144 43606144 G A SCUBE1 Missense_Mutation p.A829V 0.29 tolerated(0.09) benign(0.005) TCGA-L5-A4OW-01 2 112722829 112722829 C T MERTK Silent p.S273S 0.45 TCGA-L5-A4OW-01 2 135199370 135199370 C T MGAT5 Silent p.A637A 0.23 TCGA-L5-A4OW-01 2 141458111 141458111 A C LRP1B Silent p.A2169A 0.38 TCGA-L5-A4OW-01 2 153482063 153482063 A T FMNL2 Missense_Mutation p.E650V 0.12 possibly_damaging(0.607) TCGA-L5-A4OW-01 2 163128830 163128830 A T IFIH1 Missense_Mutation p.I841N 0.07 deleterious(0) benign(0.187) TCGA-L5-A4OW-01 2 1652615 1652615 G A PXDN Silent p.N979N 0.21 TCGA-L5-A4OW-01 2 165994580 165994580 C A SCN3A Missense_Mutation p.A734S 0.12 deleterious(0.04) probably_damaging(0.998) TCGA-L5-A4OW-01 2 175427305 175427305 A C WIPF1 Silent p.G494G 0.22 TCGA-L5-A4OW-01 2 179454489 179454489 C T TTN Missense_Mutation p.E20655K 0.21 TCGA-L5-A4OW-01 2 179596509 179596509 T C TTN Missense_Mutation p.K5698R 0.14 TCGA-L5-A4OW-01 2 185803872 185803872 G A ZNF804A 3'UTR 0.23 TCGA-L5-A4OW-01 2 203084799 203084799 C - SUMO1 Frame_Shift_Del p.D15Ifs*24 0.27 TCGA-L5-A4OW-01 2 211512630 211512630 A C CPS1 Missense_Mutation p.N1068T 0.16 deleterious(0) probably_damaging(0.983) TCGA-L5-A4OW-01 2 211542621 211542621 T G CPS1 Missense_Mutation p.L1478R 0.37 deleterious(0) probably_damaging(0.929) TCGA-L5-A4OW-01 2 21229930 21229930 G A APOB Silent p.F3270F 0.21 TCGA-L5-A4OW-01 2 215884502 215884502 A C ABCA12 Missense_Mutation p.L436V 0.36 deleterious(0.03) benign(0.04) TCGA-L5-A4OW-01 2 242179451 242179451 C A HDLBP Missense_Mutation p.K752N 0.09 deleterious(0) possibly_damaging(0.728) TCGA-L5-A4OW-01 2 26534262 26534262 C A GPR113 Missense_Mutation p.L778F 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A4OW-01 2 3192879 3192879 G A TSSC1 3'UTR 0.70 TCGA-L5-A4OW-01 2 33622241 33622241 G A LTBP1 Missense_Mutation p.G1626S 0.32 deleterious(0.01) probably_damaging(1) TCGA-L5-A4OW-01 2 40656365 40656365 T A SLC8A1 Missense_Mutation p.Q352H 0.30 tolerated(0.22) benign(0.03) TCGA-L5-A4OW-01 2 63283897 63283897 C T OTX1 3'UTR 0.15 TCGA-L5-A4OW-01 2 74184313 74184313 A T DGUOK Missense_Mutation p.Y218F 0.10 deleterious(0.03) probably_damaging(0.991) TCGA-L5-A4OW-01 2 97817664 97817664 T A ANKRD36 Missense_Mutation p.S384T 0.03 deleterious_low_confidence(0) possibly_damaging(0.481) TCGA-L5-A4OW-01 3 10354308 10354308 C T SEC13 Missense_Mutation p.G91S 0.35 tolerated(0.14) benign(0.008) TCGA-L5-A4OW-01 3 11067497 11067497 C T SLC6A1 Silent p.Y296Y 0.26 TCGA-L5-A4OW-01 3 113850244 113850244 G A DRD3 Missense_Mutation p.L243F 0.09 tolerated(0.16) benign(0.336) TCGA-L5-A4OW-01 3 124483298 124483298 G A ITGB5 Silent p.I748I 0.22 TCGA-L5-A4OW-01 3 124635298 124635298 C T MUC13 Missense_Mutation p.R276H 0.09 deleterious(0.03) possibly_damaging(0.864) TCGA-L5-A4OW-01 3 138665331 138665331 G A FOXL2 Silent p.S78S 0.28 TCGA-L5-A4OW-01 3 140407130 140407130 A G TRIM42 Missense_Mutation p.S536G 0.17 deleterious(0) possibly_damaging(0.831) TCGA-L5-A4OW-01 3 147128795 147128795 A G ZIC1 Missense_Mutation p.E299G 0.21 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OW-01 3 151599113 151599113 G A SUCNR1 Missense_Mutation p.G261E 0.17 tolerated(0.58) benign(0.004) TCGA-L5-A4OW-01 3 167339315 167339315 A G WDR49 Intron 0.15 TCGA-L5-A4OW-01 3 178947851 178947851 T G PIK3CA Missense_Mutation p.F909C 0.19 deleterious(0) probably_damaging(0.984) TCGA-L5-A4OW-01 3 35727200 35727200 A C ARPP21 Intron 0.25 TCGA-L5-A4OW-01 3 46062567 46062567 C T XCR1 Silent p.G291G 0.13 TCGA-L5-A4OW-01 3 47040460 47040460 G A NBEAL2 Silent p.A1132A 0.08 TCGA-L5-A4OW-01 3 54798378 54798378 T C CACNA2D3 Silent p.T460T 0.38 TCGA-L5-A4OW-01 3 55108385 55108385 A G CACNA2D3 3'UTR 0.30 TCGA-L5-A4OW-01 3 68466475 68466475 A G FAM19A1 Missense_Mutation p.K55R 0.18 tolerated(0.35) possibly_damaging(0.86) TCGA-L5-A4OW-01 3 77542488 77542488 C A ROBO2 Missense_Mutation p.P270Q 0.31 deleterious(0) probably_damaging(0.942) TCGA-L5-A4OW-01 3 98110010 98110010 T C OR5K3 Silent p.T167T 0.40 TCGA-L5-A4OW-01 4 10446830 10446830 C A ZNF518B Missense_Mutation p.G375W 0.18 deleterious(0) possibly_damaging(0.841) TCGA-L5-A4OW-01 4 126240637 126240637 A G FAT4 Missense_Mutation p.D1024G 0.21 probably_damaging(1) TCGA-L5-A4OW-01 4 126373295 126373295 A C FAT4 Silent p.T3708T 0.19 TCGA-L5-A4OW-01 4 126411990 126411990 T G FAT4 Missense_Mutation p.S4671R 0.20 probably_damaging(0.991) TCGA-L5-A4OW-01 4 135121457 135121457 G A PABPC4L Missense_Mutation p.H298Y 0.23 deleterious(0.05) probably_damaging(0.995) TCGA-L5-A4OW-01 4 148555367 148555367 C T TMEM184C Nonsense_Mutation p.Q367* 0.12 TCGA-L5-A4OW-01 4 154523312 154523312 G C KIAA0922 Missense_Mutation p.D759H 0.09 tolerated(0.11) probably_damaging(0.979) TCGA-L5-A4OW-01 4 156136005 156136005 T G NPY2R Missense_Mutation p.L305R 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A4OW-01 4 165798450 165798450 G A RP11-366M4.3 RNA 0.18 TCGA-L5-A4OW-01 4 189018248 189018248 T C TRIML2 Missense_Mutation p.R188G 0.19 tolerated(0.18) benign(0.031) TCGA-L5-A4OW-01 4 5053593 5053593 G A STK32B Translation_Start_Site p.M1? 0.30 deleterious(0) benign(0.16) TCGA-L5-A4OW-01 4 5624676 5624676 A G EVC2 Missense_Mutation p.F697L 0.15 tolerated(0.39) benign(0.002) TCGA-L5-A4OW-01 4 6596426 6596426 C T MAN2B2 Missense_Mutation p.R342C 0.16 deleterious(0) probably_damaging(0.982) TCGA-L5-A4OW-01 4 73185073 73185073 C T ADAMTS3 Missense_Mutation p.G443D 0.14 deleterious(0.02) possibly_damaging(0.588) TCGA-L5-A4OW-01 4 81952653 81952653 C T BMP3 Missense_Mutation p.A72V 0.32 tolerated(0.29) benign(0.012) TCGA-L5-A4OW-01 4 93511341 93511341 G A GRID2 Missense_Mutation p.D50N 0.12 tolerated(0.12) probably_damaging(0.991) TCGA-L5-A4OW-01 4 94137897 94137897 C T GRID2 Silent p.N266N 0.18 TCGA-L5-A4OW-01 4 96761425 96761425 T G PDHA2 Missense_Mutation p.Y42D 0.28 deleterious(0) benign(0.323) TCGA-L5-A4OW-01 5 101572460 101572461 - A SLCO4C1 3'UTR 0.14 TCGA-L5-A4OW-01 5 13717530 13717530 T C DNAH5 Missense_Mutation p.K4200R 0.55 possibly_damaging(0.621) TCGA-L5-A4OW-01 5 140050584 140050586 GGG - WDR55 3'UTR 0.21 TCGA-L5-A4OW-01 5 140235739 140235739 G A PCDHA10 Missense_Mutation p.E36K 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OW-01 5 140482358 140482358 G A PCDHB3 Missense_Mutation p.V709M 0.11 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-L5-A4OW-01 5 140734992 140734992 C T PCDHGA4 Silent p.F75F 0.07 TCGA-L5-A4OW-01 5 140755574 140755574 C A PCDHGA6 Missense_Mutation p.L642I 0.08 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A4OW-01 5 140788505 140788505 G A PCDHGB6 Missense_Mutation p.E246K 0.13 deleterious(0.01) benign(0.048) TCGA-L5-A4OW-01 5 140801036 140801036 G A PCDHGA11 Missense_Mutation p.R81Q 0.08 deleterious_low_confidence(0.04) benign(0.257) TCGA-L5-A4OW-01 5 1489926 1489926 C G LPCAT1 Missense_Mutation p.D181H 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A4OW-01 5 149504349 149504349 G A PDGFRB Missense_Mutation p.T618M 0.41 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OW-01 5 160029694 160029694 C T ATP10B Missense_Mutation p.D1085N 0.25 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OW-01 5 168151436 168151436 C T SLIT3 Missense_Mutation p.R775Q 0.31 deleterious(0.03) possibly_damaging(0.461) TCGA-L5-A4OW-01 5 175777628 175777628 G A KIAA1191 Silent p.A149A 0.45 TCGA-L5-A4OW-01 5 21783502 21783502 G A CDH12 Missense_Mutation p.A453V 0.07 tolerated(0.19) benign(0.071) TCGA-L5-A4OW-01 5 33534969 33534969 T G ADAMTS12 Missense_Mutation p.K1525N 0.34 tolerated(0.12) benign(0.015) TCGA-L5-A4OW-01 5 5235215 5235215 T G ADAMTS16 Missense_Mutation p.F647V 0.44 deleterious(0) probably_damaging(0.928) TCGA-L5-A4OW-01 5 56155693 56155697 TGAAA - MAP3K1 Frame_Shift_Del p.K263Rfs*36 0.28 TCGA-L5-A4OW-01 5 76696107 76696107 C A PDE8B Missense_Mutation p.S401Y 0.30 tolerated(0.55) benign(0.092) TCGA-L5-A4OW-01 5 82816669 82816669 A C VCAN Missense_Mutation p.E848D 0.56 tolerated(0.19) benign(0.012) TCGA-L5-A4OW-01 6 100060981 100060981 G A PRDM13 Missense_Mutation p.R157H 0.11 tolerated(0.78) benign(0.035) TCGA-L5-A4OW-01 6 11185638 11185638 G T NEDD9 Missense_Mutation p.H754Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OW-01 6 135539052 135539052 G C MYB Missense_Mutation p.Q740H 0.89 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OW-01 6 135539249 135539249 G A MYB 3'UTR 0.88 TCGA-L5-A4OW-01 6 135539839 135539839 G C MYB 3'UTR 0.82 TCGA-L5-A4OW-01 6 135540214 135540214 G A MYB 3'UTR 0.88 TCGA-L5-A4OW-01 6 22292815 22292815 A C PRL Silent p.T88T 0.09 TCGA-L5-A4OW-01 6 26156779 26156799 GCAGCGGCGTATCTTTGGCCG TGTTGCCGC HIST1H1E In_Frame_Del p.R54_A61delinsLLPP 0.39 TCGA-L5-A4OW-01 6 26156791 26156791 C G HIST1H1E Missense_Mutation p.S58C 0.26 deleterious(0) probably_damaging(0.925) TCGA-L5-A4OW-01 6 26156794 26156795 TG - HIST1H1E Frame_Shift_Del p.L59Cfs*13 0.27 TCGA-L5-A4OW-01 6 26156799 26156800 - C HIST1H1E Frame_Shift_Ins p.L62Sfs*11 0.35 TCGA-L5-A4OW-01 6 27861281 27861281 G A HIST1H2BO Missense_Mutation p.G14D 0.07 deleterious_low_confidence(0.01) unknown(0) TCGA-L5-A4OW-01 6 34389563 34389563 G A RPS10 Missense_Mutation p.A115V 0.39 tolerated(0.21) benign(0.035) TCGA-L5-A4OW-01 6 50696968 50696968 T G TFAP2D Missense_Mutation p.L276V 0.06 deleterious(0.01) probably_damaging(0.946) TCGA-L5-A4OW-01 6 7390205 7390205 G A RIOK1 5'UTR 0.10 TCGA-L5-A4OW-01 6 88768457 88768457 C A SPACA1 Missense_Mutation p.L131I 0.28 tolerated(0.06) possibly_damaging(0.797) TCGA-L5-A4OW-01 6 93956601 93956601 C T EPHA7 Missense_Mutation p.E879K 0.09 tolerated(0.25) benign(0.082) TCGA-L5-A4OW-01 7 107830095 107830095 T C NRCAM Missense_Mutation p.I677V 0.47 tolerated(0.15) benign(0.055) TCGA-L5-A4OW-01 7 127010876 127010876 A T ZNF800 3'UTR 0.08 TCGA-L5-A4OW-01 7 137801463 137801463 A C AKR1D1 3'UTR 0.34 TCGA-L5-A4OW-01 7 142459717 142459717 A G PRSS1 Missense_Mutation p.Q98R 0.08 tolerated(0.36) benign(0.001) TCGA-L5-A4OW-01 7 150491085 150491085 C T TMEM176B Silent p.L93L 0.56 TCGA-L5-A4OW-01 7 5886674 5886676 CTT - ZNF815P RNA 0.17 TCGA-L5-A4OW-01 7 64350004 64350004 G T RP11-797H7.5 RNA 0.23 TCGA-L5-A4OW-01 7 86493638 86493638 G A GRM3 Silent p.R869R 0.06 TCGA-L5-A4OW-01 7 90895993 90895993 T G FZD1 Missense_Mutation p.F600V 0.27 tolerated(0.21) benign(0.326) TCGA-L5-A4OW-01 7 92734538 92734538 T G SAMD9 Missense_Mutation p.E291D 0.09 tolerated(0.09) benign(0.059) TCGA-L5-A4OW-01 7 99918577 99918577 C T SPDYE3 3'UTR 0.03 TCGA-L5-A4OW-01 8 101715431 101715431 C T PABPC1 3'UTR 0.09 TCGA-L5-A4OW-01 8 10466111 10466111 C T RP1L1 Missense_Mutation p.E1833K 0.09 unknown(0) TCGA-L5-A4OW-01 8 113249528 113249528 A C CSMD3 Missense_Mutation p.N3506K 0.33 deleterious(0.01) benign(0.165) TCGA-L5-A4OW-01 8 116430667 116430667 G T TRPS1 Missense_Mutation p.S905Y 0.32 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A4OW-01 8 12580513 12580513 G A LONRF1 3'UTR 0.11 TCGA-L5-A4OW-01 8 130762254 130762254 G C GSDMC Missense_Mutation p.L399V 0.10 deleterious(0.01) probably_damaging(0.936) TCGA-L5-A4OW-01 8 145160670 145160670 G A MAF1 Splice_Site p.X28_splice 0.29 TCGA-L5-A4OW-01 8 145701142 145701142 G A FOXH1 5'UTR 0.10 TCGA-L5-A4OW-01 8 145739686 145739686 C T RECQL4 Missense_Mutation p.G589S 0.14 tolerated(0.49) benign(0.012) TCGA-L5-A4OW-01 8 1497818 1497818 A C DLGAP2 Missense_Mutation p.K320T 0.09 tolerated(0.16) possibly_damaging(0.864) TCGA-L5-A4OW-01 8 22167540 22167540 G A PIWIL2 Missense_Mutation p.E585K 0.36 deleterious(0.04) benign(0.007) TCGA-L5-A4OW-01 8 23190975 23190975 A T LOXL2 Missense_Mutation p.V302E 0.07 tolerated(0.08) possibly_damaging(0.598) TCGA-L5-A4OW-01 8 3141850 3141850 G A CSMD1 Silent p.F1323F 0.19 TCGA-L5-A4OW-01 8 33405605 33405605 C T RNF122 3'UTR 0.16 TCGA-L5-A4OW-01 8 38250325 38250325 C A LETM2 Missense_Mutation p.P58T 0.09 tolerated(0.08) benign(0.004) TCGA-L5-A4OW-01 8 3855585 3855585 A C CSMD1 Missense_Mutation p.S220A 0.32 benign(0.197) TCGA-L5-A4OW-01 8 41122735 41122735 T G SFRP1 Missense_Mutation p.K299T 0.15 deleterious(0.04) possibly_damaging(0.904) TCGA-L5-A4OW-01 8 52320958 52320958 C T PXDNL Missense_Mutation p.E1076K 0.24 deleterious(0.01) benign(0.206) TCGA-L5-A4OW-01 8 54791923 54791923 C T RGS20 Missense_Mutation p.R91W 0.08 deleterious_low_confidence(0) possibly_damaging(0.635) TCGA-L5-A4OW-01 8 57074687 57074687 T G PLAG1 3'UTR 0.19 TCGA-L5-A4OW-01 8 67926793 67926793 A G PPP1R42 Missense_Mutation p.L55S 0.13 deleterious(0) probably_damaging(0.995) TCGA-L5-A4OW-01 8 77616566 77616566 C A ZFHX4 Silent p.P81P 0.09 TCGA-L5-A4OW-01 8 77763524 77763524 T G ZFHX4 Missense_Mutation p.L1456R 0.08 possibly_damaging(0.883) TCGA-L5-A4OW-01 8 82727597 82727597 T A SNX16 Missense_Mutation p.D215V 0.10 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OW-01 8 87755756 87755756 T G CNGB3 Missense_Mutation p.S34R 0.14 tolerated(0.23) benign(0.034) TCGA-L5-A4OW-01 9 100431892 100431892 G A NCBP1 Silent p.L721L 0.18 TCGA-L5-A4OW-01 9 133996943 133996943 C T AIF1L 3'UTR 0.14 TCGA-L5-A4OW-01 9 139687491 139687491 G T TMEM141 3'UTR 0.56 TCGA-L5-A4OW-01 9 82335074 82335074 C T TLE4 Silent p.R568R 0.24 TCGA-L5-A4OW-01 X 101581456 101581456 T A NXF2 3'UTR 0.10 TCGA-L5-A4OW-01 X 103294940 103294940 G A H2BFM Missense_Mutation p.A133T 0.23 deleterious(0.05) possibly_damaging(0.781) TCGA-L5-A4OW-01 X 103411437 103411437 G A FAM199X 5'UTR 0.26 TCGA-L5-A4OW-01 X 114426992 114426992 C T RBMXL3 Silent p.G996G 0.42 TCGA-L5-A4OW-01 X 114863595 114863595 G T PLS3 Missense_Mutation p.G108V 0.24 deleterious(0) probably_damaging(0.912) TCGA-L5-A4OW-01 X 115305214 115305214 G A AGTR2 3'UTR 0.28 TCGA-L5-A4OW-01 X 117583367 117583367 T C WDR44 3'UTR 0.47 TCGA-L5-A4OW-01 X 118222391 118222391 A C KIAA1210 Silent p.T934T 0.42 TCGA-L5-A4OW-01 X 118222580 118222580 T C KIAA1210 Silent p.E871E 0.18 TCGA-L5-A4OW-01 X 118968838 118968838 T G UPF3B 3'UTR 0.18 TCGA-L5-A4OW-01 X 123176428 123176428 C A STAG2 Missense_Mutation p.T132K 0.13 deleterious(0) possibly_damaging(0.691) TCGA-L5-A4OW-01 X 129190378 129190378 G T BCORL1 3'UTR 0.39 TCGA-L5-A4OW-01 X 135104757 135104757 T C SLC9A6 Silent p.L455L 0.12 TCGA-L5-A4OW-01 X 142596573 142596573 T C SPANXN3 3'UTR 0.23 TCGA-L5-A4OW-01 X 144905711 144905711 T C SLITRK2 Silent p.L590L 0.56 TCGA-L5-A4OW-01 X 147088344 147088344 T C FMR1NB Missense_Mutation p.F174L 0.17 deleterious(0.01) benign(0.294) TCGA-L5-A4OW-01 X 152615793 152615793 C T ZNF275 3'UTR 0.50 TCGA-L5-A4OW-01 X 152686804 152686804 C T ZFP92 Silent p.R323R 0.44 TCGA-L5-A4OW-01 X 153039000 153039000 C A PLXNB3 Silent p.G1060G 0.67 TCGA-L5-A4OW-01 X 153281953 153281953 G C IRAK1 Missense_Mutation p.L391V 0.50 deleterious(0) probably_damaging(0.923) TCGA-L5-A4OW-01 X 154002914 154002914 T C DKC1 Missense_Mutation p.L398P 0.15 deleterious(0) probably_damaging(0.997) TCGA-L5-A4OW-01 X 154158672 154158672 A T F8 Silent p.T1131T 0.20 TCGA-L5-A4OW-01 X 18264857 18264857 A C SCML2 Nonsense_Mutation p.Y554* 0.34 TCGA-L5-A4OW-01 X 21869646 21869646 C T MBTPS2 Missense_Mutation p.P153L 0.30 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OW-01 X 24608245 24608245 C T PCYT1B Missense_Mutation p.M127I 0.04 deleterious(0) possibly_damaging(0.823) TCGA-L5-A4OW-01 X 34149455 34149455 C T FAM47A Missense_Mutation p.R314H 0.06 tolerated(0.56) benign(0.001) TCGA-L5-A4OW-01 X 46433545 46433545 C T CHST7 Missense_Mutation p.A60V 0.32 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-L5-A4OW-01 X 47444888 47444888 C A TIMP1 Intron 0.25 TCGA-L5-A4OW-01 X 48433656 48433656 G A RBM3 Missense_Mutation p.G30R 0.10 tolerated(0.11) possibly_damaging(0.746) TCGA-L5-A4OW-01 X 48834841 48834841 T C GRIPAP1 Missense_Mutation p.E646G 0.22 benign(0.001) TCGA-L5-A4OW-01 X 49031098 49031098 A C PLP2 3'UTR 0.29 TCGA-L5-A4OW-01 X 51644982 51644982 T G MAGED1 Missense_Mutation p.F821V 0.24 tolerated_low_confidence(0.08) possibly_damaging(0.504) TCGA-L5-A4OW-01 X 53349734 53349734 C T IQSEC2 Silent p.P196P 0.31 TCGA-L5-A4OW-01 X 53578362 53578362 G A HUWE1 Silent p.N2987N 0.28 TCGA-L5-A4OW-01 X 53602122 53602122 T A HUWE1 Missense_Mutation p.Q2030H 0.42 possibly_damaging(0.859) TCGA-L5-A4OW-01 X 64744457 64744457 G A LAS1L Silent p.D360D 0.23 TCGA-L5-A4OW-01 X 65413355 65413355 A C HEPH Missense_Mutation p.K469T 0.19 tolerated(0.62) benign(0.258) TCGA-L5-A4OW-01 X 65824293 65824293 T A EDA2R Missense_Mutation p.T108S 0.06 tolerated(0.05) benign(0.131) TCGA-L5-A4OW-01 X 67942429 67942429 C T STARD8 Missense_Mutation p.R914C 0.07 deleterious(0.02) benign(0.048) TCGA-L5-A4OW-01 X 73961267 73961267 T A KIAA2022 Missense_Mutation p.E1042V 0.12 deleterious(0) probably_damaging(0.977) TCGA-L5-A4OW-01 X 77381499 77381499 C T PGK1 3'UTR 0.06 TCGA-L5-A4OW-01 X 83124910 83124910 C T CYLC1 Missense_Mutation p.P19S 0.06 tolerated(0.8) benign(0.136) TCGA-L5-A4OX-01 10 135038505 135038505 C T KNDC1 3'UTR 0.35 TCGA-L5-A4OX-01 10 64973313 64973321 CATGTGTTC - JMJD1C In_Frame_Del p.G869_H871del 0.32 TCGA-L5-A4OX-01 10 72643625 72643625 G C PCBD1 3'UTR 0.42 TCGA-L5-A4OX-01 10 73501677 73501677 C T CDH23 Missense_Mutation p.S1620L 0.38 tolerated(0.09) probably_damaging(0.947) TCGA-L5-A4OX-01 11 108382046 108382046 A T EXPH5 Silent p.T1396T 0.18 TCGA-L5-A4OX-01 11 115045865 115045865 G A CADM1 3'UTR 0.30 TCGA-L5-A4OX-01 11 123909177 123909177 A T OR10G7 Missense_Mutation p.C178S 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A4OX-01 11 124530643 124530643 C A SIAE Nonsense_Mutation p.E96* 0.32 TCGA-L5-A4OX-01 11 130780030 130780030 T G SNX19 Missense_Mutation p.Q639H 0.36 tolerated(0.09) probably_damaging(0.928) TCGA-L5-A4OX-01 11 18158733 18158733 G T MRGPRX3 5'UTR 0.27 TCGA-L5-A4OX-01 11 24998138 24998138 C T LUZP2 Missense_Mutation p.A175V 0.28 deleterious(0) probably_damaging(0.991) TCGA-L5-A4OX-01 11 43591340 43591340 C T MIR670HG RNA 0.34 TCGA-L5-A4OX-01 11 48346896 48346896 T G OR4C3 Missense_Mutation p.V135G 0.18 deleterious(0) benign(0.234) TCGA-L5-A4OX-01 11 5410768 5410768 A G OR51M1 Missense_Mutation p.Y47C 0.37 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OX-01 11 55890583 55890583 C T OR8H3 Silent p.L245L 0.26 TCGA-L5-A4OX-01 11 58189836 58189836 T G OR5B2 Missense_Mutation p.K300T 0.25 tolerated_low_confidence(0.23) benign(0.009) TCGA-L5-A4OX-01 11 6265529 6265529 C T CNGA4 Missense_Mutation p.P540S 0.27 tolerated(0.71) possibly_damaging(0.868) TCGA-L5-A4OX-01 11 64068305 64068305 C T TEX40 Silent p.H66H 0.17 TCGA-L5-A4OX-01 11 6867550 6867550 T C OR10A5 Silent p.L213L 0.18 TCGA-L5-A4OX-01 11 93394906 93394906 G A KIAA1731 5'UTR 0.33 TCGA-L5-A4OX-01 12 10999790 10999790 G A PRR4 Nonsense_Mutation p.R93* 0.36 TCGA-L5-A4OX-01 12 110777326 110777326 A T ATP2A2 Missense_Mutation p.I521F 0.35 deleterious(0.02) benign(0.019) TCGA-L5-A4OX-01 12 110824211 110824211 C T ANAPC7 Silent p.L280L 0.16 TCGA-L5-A4OX-01 12 117187991 117187991 C T RNFT2 Silent p.D143D 0.31 TCGA-L5-A4OX-01 12 12232486 12232486 G A BCL2L14 Missense_Mutation p.A83T 0.50 tolerated(0.6) benign(0.001) TCGA-L5-A4OX-01 12 12339897 12339897 G C LRP6 Silent p.P268P 0.29 TCGA-L5-A4OX-01 12 129558271 129558271 C T TMEM132D 3'UTR 0.32 TCGA-L5-A4OX-01 12 130649987 130649987 T G FZD10 3'UTR 0.39 TCGA-L5-A4OX-01 12 133398705 133398705 C T GOLGA3 Missense_Mutation p.A4T 0.29 tolerated_low_confidence(0.12) benign(0.003) TCGA-L5-A4OX-01 12 1945718 1945718 C A LRTM2 3'UTR 0.50 TCGA-L5-A4OX-01 12 2062350 2062350 C G DCP1B Missense_Mutation p.Q252H 0.32 tolerated(0.39) benign(0) TCGA-L5-A4OX-01 12 21727109 21727109 G T GYS2 Missense_Mutation p.A216E 0.37 deleterious(0.01) possibly_damaging(0.771) TCGA-L5-A4OX-01 12 29469890 29469890 C T FAR2 Missense_Mutation p.R358W 0.33 tolerated(0.19) benign(0.006) TCGA-L5-A4OX-01 12 393605 393605 G C KDM5A 3'UTR 0.31 TCGA-L5-A4OX-01 12 52448812 52448812 G C NR4A1 Missense_Mutation p.A247P 0.09 tolerated(0.26) benign(0.063) TCGA-L5-A4OX-01 12 52448813 52448813 C A NR4A1 Missense_Mutation p.A247E 0.09 tolerated(0.33) benign(0.015) TCGA-L5-A4OX-01 12 56491645 56491645 G T ERBB3 Missense_Mutation p.S846I 0.37 tolerated(0.32) possibly_damaging(0.611) TCGA-L5-A4OX-01 12 56989891 56989892 - A BAZ2A 3'UTR 0.18 TCGA-L5-A4OX-01 12 57057823 57057823 T A PTGES3 3'UTR 0.42 TCGA-L5-A4OX-01 12 62749183 62749183 G A USP15 Missense_Mutation p.R281K 0.35 tolerated(0.57) benign(0.017) TCGA-L5-A4OX-01 12 64062268 64062268 C T DPY19L2 5'UTR 0.23 TCGA-L5-A4OX-01 12 81528635 81528635 A C ACSS3 Missense_Mutation p.K166T 0.33 tolerated(0.49) benign(0.16) TCGA-L5-A4OX-01 12 98849120 98849120 G A SLC9A7P1 RNA 0.35 TCGA-L5-A4OX-01 13 41132554 41132554 T C FOXO1 3'UTR 0.31 TCGA-L5-A4OX-01 13 60554939 60554939 A G DIAPH3 Missense_Mutation p.L512P 0.22 deleterious(0) possibly_damaging(0.523) TCGA-L5-A4OX-01 13 84453468 84453468 A G SLITRK1 3'UTR 0.20 TCGA-L5-A4OX-01 14 105268799 105268799 T G ZBTB42 Missense_Mutation p.V422G 0.24 deleterious_low_confidence(0) benign(0.065) TCGA-L5-A4OX-01 14 105413989 105413989 G A AHNAK2 Missense_Mutation p.A2600V 0.43 benign(0.008) TCGA-L5-A4OX-01 14 106092396 106092396 G T IGHG4 Missense_Mutation p.T3N 0.23 tolerated(0.08) benign(0.067) TCGA-L5-A4OX-01 14 23080706 23080706 G T ABHD4 3'UTR 0.33 TCGA-L5-A4OX-01 14 44974184 44974184 T G FSCB Missense_Mutation p.E669D 0.41 tolerated(0.16) unknown(0) TCGA-L5-A4OX-01 14 47120380 47120380 T C RPL10L Missense_Mutation p.K187R 0.26 deleterious(0.04) benign(0.009) TCGA-L5-A4OX-01 14 47351260 47351260 C T MDGA2 Silent p.V801V 0.15 TCGA-L5-A4OX-01 14 68228075 68228075 T G ZFYVE26 Intron 0.15 TCGA-L5-A4OX-01 14 94173515 94173515 T - UNC79 3'UTR 0.36 TCGA-L5-A4OX-01 15 25213158 25213158 T G SNURF Missense_Mutation p.L64V 0.41 deleterious_low_confidence(0.02) benign(0.132) TCGA-L5-A4OX-01 15 25432688 25432688 G A SNORD115-10 RNA 0.34 TCGA-L5-A4OX-01 15 42136011 42136011 T C PLA2G4B Splice_Site p.X524_splice 0.06 TCGA-L5-A4OX-01 15 42987387 42987387 T G STARD9 Missense_Mutation p.L4338V 0.60 benign(0.187) TCGA-L5-A4OX-01 15 48493747 48493747 T C CTXN2 3'UTR 0.34 TCGA-L5-A4OX-01 15 54919961 54919961 A C UNC13C 3'UTR 0.09 TCGA-L5-A4OX-01 15 69745321 69745321 T C RPLP1 Missense_Mutation p.S12P 0.19 deleterious(0.04) possibly_damaging(0.701) TCGA-L5-A4OX-01 15 74925058 74925058 G C EDC3 Missense_Mutation p.I474M 0.39 tolerated(0.11) benign(0.01) TCGA-L5-A4OX-01 15 78894371 78894371 C T CHRNA3 Missense_Mutation p.G205S 0.41 tolerated(0.19) probably_damaging(1) TCGA-L5-A4OX-01 15 97328809 97328809 T G SPATA8 3'UTR 0.59 TCGA-L5-A4OX-01 16 12996200 12996200 C T SHISA9 Silent p.G93G 0.31 TCGA-L5-A4OX-01 16 23415147 23415147 C T COG7 Silent p.G557G 0.26 TCGA-L5-A4OX-01 16 27840194 27840194 C T GSG1L Missense_Mutation p.R249Q 0.23 tolerated(0.12) probably_damaging(0.996) TCGA-L5-A4OX-01 16 2814390 2814390 C T SRRM2 Silent p.S1287S 0.36 TCGA-L5-A4OX-01 16 31925958 31925958 G C ZNF267 Missense_Mutation p.D130H 0.27 tolerated(0.16) benign(0.097) TCGA-L5-A4OX-01 16 50349461 50349461 C A BRD7 3'Flank 0.39 TCGA-L5-A4OX-01 16 55853484 55853484 T C CES1 Missense_Mutation p.K290R 0.34 deleterious(0.02) possibly_damaging(0.554) TCGA-L5-A4OX-01 16 67305446 67305446 G T SLC9A5 3'UTR 0.37 TCGA-L5-A4OX-01 16 71482989 71482989 A G ZNF23 Silent p.C313C 0.36 TCGA-L5-A4OX-01 16 90002059 90002059 C T TUBB3 Silent p.G400G 0.09 TCGA-L5-A4OX-01 16 90038412 90038412 C T CENPBD1 5'UTR 0.38 TCGA-L5-A4OX-01 17 16285922 16285922 A G UBB 3'UTR 0.41 TCGA-L5-A4OX-01 17 17718011 17718011 G A SREBF1 Missense_Mutation p.H915Y 0.73 tolerated(0.22) possibly_damaging(0.493) TCGA-L5-A4OX-01 17 29848204 29848204 C G RAB11FIP4 Missense_Mutation p.S195C 0.14 deleterious(0.03) possibly_damaging(0.614) TCGA-L5-A4OX-01 17 39580086 39580086 C A KRT37 Missense_Mutation p.S168I 0.06 tolerated(0.07) benign(0.018) TCGA-L5-A4OX-01 17 40177440 40177440 C T NKIRAS2 3'UTR 0.58 TCGA-L5-A4OX-01 17 40841641 40841641 C T CNTNAP1 Silent p.H577H 0.29 TCGA-L5-A4OX-01 17 7577503 7577510 AGTCTTCC - TP53 Frame_Shift_Del p.E258Qfs*3 0.72 TCGA-L5-A4OX-01 18 6894866 6894866 A C ARHGAP28 Missense_Mutation p.Q468H 0.28 deleterious(0.01) probably_damaging(0.947) TCGA-L5-A4OX-01 18 6965355 6965355 A C LAMA1 Missense_Mutation p.L2376R 0.32 deleterious(0) probably_damaging(0.998) TCGA-L5-A4OX-01 19 14044255 14044255 G A PODNL1 Missense_Mutation p.L268F 0.30 deleterious(0) probably_damaging(1) TCGA-L5-A4OX-01 19 14271034 14271034 C T LPHN1 Missense_Mutation p.D569N 0.33 deleterious(0) probably_damaging(0.986) TCGA-L5-A4OX-01 19 20116800 20116800 T C ZNF682 3'UTR 0.23 TCGA-L5-A4OX-01 19 22034809 22034809 C T ZNF43 5'UTR 0.38 TCGA-L5-A4OX-01 19 22156000 22156000 T G ZNF208 Missense_Mutation p.E612D 0.15 tolerated(0.32) possibly_damaging(0.807) TCGA-L5-A4OX-01 19 22575670 22575670 T C ZNF98 Missense_Mutation p.R123G 0.33 deleterious(0.04) benign(0) TCGA-L5-A4OX-01 19 37370402 37370402 G T ZNF345 3'UTR 0.36 TCGA-L5-A4OX-01 19 42312912 42312912 C T CEACAM3 Silent p.V162V 0.38 TCGA-L5-A4OX-01 19 43857882 43857882 C T CD177 Silent p.L6L 0.32 TCGA-L5-A4OX-01 19 5131108 5131108 G A KDM4B Missense_Mutation p.R446Q 0.44 benign(0.006) TCGA-L5-A4OX-01 19 52272896 52272896 T G FPR2 Missense_Mutation p.S329A 0.17 tolerated(0.38) benign(0.184) TCGA-L5-A4OX-01 19 52328240 52328240 G T FPR3 3'UTR 0.61 TCGA-L5-A4OX-01 19 52399785 52399785 A C ZNF649 Missense_Mutation p.L60V 0.28 deleterious(0.01) benign(0.221) TCGA-L5-A4OX-01 19 55614912 55614912 C T PPP1R12C Missense_Mutation p.R199Q 0.11 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OX-01 1 115142017 115142017 G T DENND2C Missense_Mutation p.Q721K 0.22 deleterious(0.02) possibly_damaging(0.724) TCGA-L5-A4OX-01 1 11561653 11561653 C T PTCHD2 Nonsense_Mutation p.R202* 0.67 TCGA-L5-A4OX-01 1 119427940 119427940 A G TBX15 Silent p.A302A 0.35 TCGA-L5-A4OX-01 1 152328611 152328611 T C FLG2 Missense_Mutation p.S551G 0.17 unknown(0) TCGA-L5-A4OX-01 1 153234582 153234582 A T LOR 3'UTR 0.55 TCGA-L5-A4OX-01 1 156347811 156347811 C T RHBG Silent p.A135A 0.21 TCGA-L5-A4OX-01 1 156452378 156452378 C T MEF2D Missense_Mutation p.V37M 0.17 deleterious(0) probably_damaging(0.975) TCGA-L5-A4OX-01 1 158576495 158576495 C G OR10Z1 Missense_Mutation p.D89E 0.48 tolerated(0.56) benign(0) TCGA-L5-A4OX-01 1 160305050 160305050 G A COPA Silent p.R97R 0.17 TCGA-L5-A4OX-01 1 170699423 170699423 C T PRRX1 Intron 0.07 TCGA-L5-A4OX-01 1 181721357 181721357 G C CACNA1E Missense_Mutation p.K1270N 0.08 deleterious(0.03) probably_damaging(0.932) TCGA-L5-A4OX-01 1 20881246 20881246 G A FAM43B 3'UTR 0.54 TCGA-L5-A4OX-01 1 225512494 225512494 C T DNAH14 Missense_Mutation p.A2482V 0.27 tolerated(0.05) possibly_damaging(0.694) TCGA-L5-A4OX-01 1 230459145 230459145 C T PGBD5 3'UTR 0.36 TCGA-L5-A4OX-01 1 248308731 248308731 G A OR2M5 Missense_Mutation p.M94I 0.51 tolerated(0.15) benign(0.007) TCGA-L5-A4OX-01 1 27106970 27106971 - C ARID1A Frame_Shift_Ins p.L2195Pfs*30 0.29 TCGA-L5-A4OX-01 1 27876274 27876274 C A AHDC1 Nonsense_Mutation p.G785* 0.30 TCGA-L5-A4OX-01 1 31404578 31404579 - C PUM1 3'Flank 0.23 TCGA-L5-A4OX-01 1 3328688 3328688 G T PRDM16 Missense_Mutation p.A643S 0.41 tolerated(0.41) benign(0.011) TCGA-L5-A4OX-01 1 40029381 40029381 G A PABPC4 Missense_Mutation p.R525C 0.38 deleterious(0.03) benign(0.049) TCGA-L5-A4OX-01 1 49208310 49208310 G T BEND5 Silent p.I293I 0.37 TCGA-L5-A4OX-01 1 6209422 6209422 A G CHD5 Missense_Mutation p.C349R 0.18 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OX-01 20 42908555 42908555 A G GDAP1L1 3'UTR 0.30 TCGA-L5-A4OX-01 20 43851408 43851408 G A SEMG2 Missense_Mutation p.E379K 0.50 tolerated(0.19) probably_damaging(0.987) TCGA-L5-A4OX-01 20 61878933 61878933 G A NKAIN4 Silent p.I156I 0.17 TCGA-L5-A4OX-01 21 11058233 11058233 C A BAGE2 RNA 0.11 TCGA-L5-A4OX-01 21 47704146 47704151 ACTTCC - MCM3AP In_Frame_Del p.E351_V352del 0.10 TCGA-L5-A4OX-01 22 17488926 17488926 C T GAB4 Missense_Mutation p.G27R 0.31 deleterious_low_confidence(0.04) probably_damaging(0.956) TCGA-L5-A4OX-01 22 44602215 44602215 C - PARVG Frame_Shift_Del p.K303Rfs*4 0.20 TCGA-L5-A4OX-01 22 50656356 50656356 G T TUBGCP6 Missense_Mutation p.L1787I 0.38 deleterious(0) probably_damaging(0.996) TCGA-L5-A4OX-01 2 102503719 102503719 C A MAP4K4 Intron 0.17 TCGA-L5-A4OX-01 2 107073461 107073461 A T RGPD3 Missense_Mutation p.L124H 0.15 tolerated(0.1) probably_damaging(0.99) TCGA-L5-A4OX-01 2 113890293 113890293 C T IL1RN Missense_Mutation p.R130C 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OX-01 2 116600733 116600733 C A DPP10 3'Flank 0.48 TCGA-L5-A4OX-01 2 132914559 132914559 T G ANKRD30BL Missense_Mutation p.E165A 0.30 deleterious(0) benign(0.238) TCGA-L5-A4OX-01 2 165948863 165948863 T G SCN3A Missense_Mutation p.T1570P 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A4OX-01 2 179411395 179411395 T C TTN Missense_Mutation p.K31587R 0.35 TCGA-L5-A4OX-01 2 179448639 179448639 A C TTN Intron 0.33 TCGA-L5-A4OX-01 2 179486721 179486721 T G TTN Missense_Mutation p.K14976N 0.21 TCGA-L5-A4OX-01 2 1795343 1795343 C T MYT1L 3'UTR 0.46 TCGA-L5-A4OX-01 2 1842952 1842952 G T MYT1L Missense_Mutation p.H1015N 0.21 deleterious(0) probably_damaging(0.999) TCGA-L5-A4OX-01 2 185800768 185800768 T G ZNF804A Silent p.S215S 0.37 TCGA-L5-A4OX-01 2 198949120 198949120 A C PLCL1 Missense_Mutation p.K293N 0.42 tolerated(0.16) possibly_damaging(0.552) TCGA-L5-A4OX-01 2 210685242 210685242 A C UNC80 Missense_Mutation p.S724R 0.35 benign(0.015) TCGA-L5-A4OX-01 2 214727298 214727298 T G SPAG16 Missense_Mutation p.L387R 0.18 deleterious(0) probably_damaging(0.958) TCGA-L5-A4OX-01 2 220315877 220315877 C T SPEG Silent p.Y711Y 0.29 TCGA-L5-A4OX-01 2 42558489 42558490 AA - EML4 3'UTR 0.36 TCGA-L5-A4OX-01 2 79386570 79386570 A C REG3A 5'UTR 0.41 TCGA-L5-A4OX-01 2 97866254 97866254 C G ANKRD36 Missense_Mutation p.S950C 0.36 tolerated_low_confidence(0.33) possibly_damaging(0.7) TCGA-L5-A4OX-01 3 10442672 10442672 C T ATP2B2 Missense_Mutation p.R249H 0.31 deleterious(0.03) possibly_damaging(0.839) TCGA-L5-A4OX-01 3 10979946 10979946 A G SLC6A11 Missense_Mutation p.K586R 0.27 tolerated(0.55) benign(0.146) TCGA-L5-A4OX-01 3 113464831 113464831 T C NAA50 5'UTR 0.52 TCGA-L5-A4OX-01 3 121208513 121208513 T G POLQ Missense_Mutation p.T1089P 0.33 tolerated_low_confidence(0.2) benign(0.169) TCGA-L5-A4OX-01 3 147105967 147105967 C G ZIC4 3'UTR 0.47 TCGA-L5-A4OX-01 3 147121771 147121771 T G ZIC4 Missense_Mutation p.N39H 0.59 tolerated_low_confidence(0.14) possibly_damaging(0.902) TCGA-L5-A4OX-01 3 150127665 150127665 A G TSC22D2 Silent p.R176R 0.35 TCGA-L5-A4OX-01 3 164712164 164712164 A C SI Silent p.T1574T 0.46 TCGA-L5-A4OX-01 3 183670901 183670901 C G ABCC5 Missense_Mutation p.L880F 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A4OX-01 3 44598919 44598919 C A ZKSCAN7 Missense_Mutation p.A127D 0.15 deleterious(0) probably_damaging(0.986) TCGA-L5-A4OX-01 3 4712575 4712575 G A ITPR1 Silent p.G708G 0.12 TCGA-L5-A4OX-01 3 48462114 48462114 T A PLXNB1 Missense_Mutation p.K663M 0.29 tolerated(0.08) probably_damaging(0.988) TCGA-L5-A4OX-01 3 49851333 49851333 A G UBA7 5'UTR 0.44 TCGA-L5-A4OX-01 3 70014297 70014297 C T MITF Silent p.V487V 0.53 TCGA-L5-A4OX-01 3 77681664 77681664 A G ROBO2 Intron 0.31 TCGA-L5-A4OX-01 4 126238008 126238008 A C FAT4 Missense_Mutation p.S148R 0.16 possibly_damaging(0.653) TCGA-L5-A4OX-01 4 57220240 57220240 G A AASDH Missense_Mutation p.H450Y 0.31 deleterious(0.01) benign(0.151) TCGA-L5-A4OX-01 4 79856348 79856348 G T PAQR3 Missense_Mutation p.T92K 0.19 tolerated(0.24) benign(0.102) TCGA-L5-A4OX-01 5 110096917 110096917 G A SLC25A46 Missense_Mutation p.R231Q 0.28 tolerated(0.09) benign(0.142) TCGA-L5-A4OX-01 5 110427984 110427984 T G WDR36 5'UTR 0.39 TCGA-L5-A4OX-01 5 114572128 114572128 T A PGGT1B Missense_Mutation p.M191L 0.21 tolerated(0.16) benign(0.057) TCGA-L5-A4OX-01 5 122343608 122343608 G A SNX24 3'UTR 0.32 TCGA-L5-A4OX-01 5 13868096 13868096 A C DNAH5 Silent p.S1280S 0.19 TCGA-L5-A4OX-01 5 139740344 139740344 C T SLC4A9 Silent p.L84L 0.37 TCGA-L5-A4OX-01 5 168149269 168149269 C T SLIT3 Silent p.L825L 0.31 TCGA-L5-A4OX-01 5 175530246 175530246 A C FAM153B Silent p.V150V 0.14 TCGA-L5-A4OX-01 5 177161918 177161918 T G FAM153A Silent p.V150V 0.27 TCGA-L5-A4OX-01 5 177309432 177309432 A C RP11-423H2.1 RNA 0.15 TCGA-L5-A4OX-01 5 38258907 38258907 C - EGFLAM Frame_Shift_Del p.L18Sfs*18 0.45 TCGA-L5-A4OX-01 5 89938579 89938579 A C GPR98 Missense_Mutation p.K789N 0.33 benign(0) TCGA-L5-A4OX-01 6 16301396 16301396 G A ATXN1 3'UTR 0.48 TCGA-L5-A4OX-01 6 22287605 22287605 C T PRL 3'UTR 0.25 TCGA-L5-A4OX-01 6 36462806 36462806 G A STK38 3'UTR 0.23 TCGA-L5-A4OX-01 6 39047354 39047354 C A GLP1R Missense_Mutation p.T353K 0.19 deleterious(0) probably_damaging(1) TCGA-L5-A4OX-01 6 41752707 41752707 G A PRICKLE4 Missense_Mutation p.R92Q 0.07 tolerated(0.28) benign(0.003) TCGA-L5-A4OX-01 6 43027177 43027202 GTCCGGCGCCGTCGCTCCGCAATAAC - MRPL2 5'UTR 0.37 TCGA-L5-A4OX-01 6 73108716 73108716 A C RIMS1 Silent p.R1594R 0.21 TCGA-L5-A4OX-01 6 89321979 89321979 A G RNGTT 3'UTR 0.25 TCGA-L5-A4OX-01 7 100865991 100865991 C T ZNHIT1 Silent p.D43D 0.34 TCGA-L5-A4OX-01 7 104753362 104753362 C T KMT2E Missense_Mutation p.P1720L 0.06 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-L5-A4OX-01 7 141631584 141631584 C T CLEC5A Missense_Mutation p.G130S 0.23 deleterious(0) probably_damaging(0.994) TCGA-L5-A4OX-01 7 142457375 142457375 C G PRSS1 Missense_Mutation p.L14V 0.29 tolerated(1) benign(0) TCGA-L5-A4OX-01 7 154684191 154684191 G T DPP6 3'UTR 0.18 TCGA-L5-A4OX-01 7 37907377 37907377 A C NME8 Missense_Mutation p.K232T 0.24 tolerated(0.1) benign(0.063) TCGA-L5-A4OX-01 7 4188896 4188896 C T SDK1 Missense_Mutation p.R1476W 0.33 deleterious(0.01) probably_damaging(0.918) TCGA-L5-A4OX-01 7 4802645 4802645 G A FOXK1 3'UTR 0.22 TCGA-L5-A4OX-01 7 75915131 75915131 C T SRRM3 3'UTR 0.38 TCGA-L5-A4OX-01 8 141595392 141595392 G A AGO2 Missense_Mutation p.P14L 0.59 tolerated(0.21) benign(0) TCGA-L5-A4OX-01 8 144993030 144993030 G A PLEC Silent p.F3790F 0.09 TCGA-L5-A4OX-01 8 21892020 21892021 - A NPM2 Frame_Shift_Ins p.L181Afs*13 0.75 TCGA-L5-A4OX-01 8 53477670 53477670 G A FAM150A Silent p.P49P 0.17 TCGA-L5-A4OX-01 8 59060500 59060500 G A FAM110B 3'UTR 0.31 TCGA-L5-A4OX-01 8 68930087 68930087 T G PREX2 Missense_Mutation p.L50V 0.08 deleterious(0.04) benign(0.279) TCGA-L5-A4OX-01 8 79503509 79503509 C T PKIA Intron 0.30 TCGA-L5-A4OX-01 8 81432722 81432722 A G ZBTB10 3'UTR 0.33 TCGA-L5-A4OX-01 9 101340352 101340352 G A GABBR2 Silent p.C108C 0.19 TCGA-L5-A4OX-01 9 117130813 117130813 C A AKNA Missense_Mutation p.Q493H 0.36 tolerated(0.25) benign(0.11) TCGA-L5-A4OX-01 9 117825202 117825202 C T TNC Missense_Mutation p.V1343I 0.10 tolerated(0.51) benign(0) TCGA-L5-A4OX-01 9 117849341 117849341 G A TNC Silent p.S223S 0.21 TCGA-L5-A4OX-01 9 121930240 121930240 G A BRINP1 Missense_Mutation p.R470W 0.56 deleterious(0.03) probably_damaging(0.973) TCGA-L5-A4OX-01 9 138515506 138515506 C A GLT6D1 3'UTR 0.24 TCGA-L5-A4OX-01 9 32631964 32631964 C T TAF1L Missense_Mutation p.R1205Q 0.26 deleterious(0.01) benign(0.03) TCGA-L5-A4OX-01 9 97329654 97329654 G C FBP2 Silent p.V201V 0.31 TCGA-L5-A4OX-01 X 105066699 105066699 C T NRK 5'UTR 0.83 TCGA-L5-A4OX-01 X 114953364 114953364 G A RP1-241P17.4 Silent p.F62F 0.05 TCGA-L5-A4OX-01 X 114953387 114953387 C T RP1-241P17.4 Missense_Mutation p.V55M 0.06 tolerated(1) benign(0.002) TCGA-L5-A4OX-01 X 119005267 119005267 G A RNF113A Missense_Mutation p.R104C 0.57 deleterious(0) benign(0.043) TCGA-L5-A4OX-01 X 127184956 127184956 T G ACTRT1 3'UTR 0.86 TCGA-L5-A4OX-01 X 132161204 132161205 - A USP26 Frame_Shift_Ins p.K349* 0.75 TCGA-L5-A4OX-01 X 138678769 138678769 C T MCF2 Missense_Mutation p.R815H 0.87 deleterious(0.01) probably_damaging(0.939) TCGA-L5-A4OX-01 X 140993851 140993851 A C MAGEC1 Missense_Mutation p.T221P 0.06 tolerated_low_confidence(0.52) benign(0.001) TCGA-L5-A4OX-01 X 140996374 140996374 T G MAGEC1 Missense_Mutation p.S1062A 0.60 deleterious(0) unknown(0) TCGA-L5-A4OX-01 X 147985822 147985822 A C AFF2 Intron 0.83 TCGA-L5-A4OX-01 X 148078422 148078422 G T AFF2 3'UTR 0.90 TCGA-L5-A4OX-01 X 154158008 154158008 C T F8 Missense_Mutation p.D1353N 0.30 tolerated(1) benign(0.001) TCGA-L5-A4OX-01 X 27840074 27840074 T A MAGEB10 Nonsense_Mutation p.C217* 0.61 TCGA-L5-A4OX-01 X 79698478 79698478 T G FAM46D Missense_Mutation p.I147S 0.61 deleterious(0.02) possibly_damaging(0.585) TCGA-L5-A88S-01 10 104173823 104173823 G C PSD Missense_Mutation p.S419C 0.21 tolerated(0.08) probably_damaging(0.997) TCGA-L5-A88S-01 10 104489519 104489519 G A SFXN2 Missense_Mutation p.A183T 0.22 deleterious(0) probably_damaging(0.939) TCGA-L5-A88S-01 10 81275734 81275734 C A EIF5AL1 3'UTR 0.19 TCGA-L5-A88S-01 10 94373310 94373310 T A KIF11 Missense_Mutation p.D322E 0.17 deleterious(0) possibly_damaging(0.766) TCGA-L5-A88S-01 10 99338349 99338349 A G ANKRD2 Missense_Mutation p.D175G 0.05 deleterious(0.01) probably_damaging(1) TCGA-L5-A88S-01 11 30902766 30902766 G A DCDC1 Silent p.D1721D 0.35 TCGA-L5-A88S-01 11 5290891 5290891 G T HBE1 Nonsense_Mutation p.Y36* 0.25 TCGA-L5-A88S-01 11 59604768 59604768 C T GIF Silent p.T250T 0.17 TCGA-L5-A88S-01 11 60565933 60565933 C T MS4A10 Missense_Mutation p.P223L 0.21 tolerated(0.08) benign(0.38) TCGA-L5-A88S-01 11 61067602 61067602 C A DDB1 3'UTR 0.18 TCGA-L5-A88S-01 11 6790090 6790090 G T OR2AG2 Silent p.I33I 0.40 TCGA-L5-A88S-01 11 67926519 67926519 T C SUV420H1 Missense_Mutation p.I432V 0.09 tolerated(1) benign(0.001) TCGA-L5-A88S-01 11 68157387 68157387 T C LRP5 Missense_Mutation p.I484T 0.25 deleterious(0) probably_damaging(0.995) TCGA-L5-A88S-01 11 92531258 92531258 C G FAT3 Missense_Mutation p.I1693M 0.18 possibly_damaging(0.595) TCGA-L5-A88S-01 11 96126565 96126565 T A JRKL 3'UTR 0.18 TCGA-L5-A88S-01 12 106460744 106460744 G A NUAK1 Missense_Mutation p.L608F 0.20 deleterious(0) probably_damaging(0.999) TCGA-L5-A88S-01 12 113617119 113617119 C G DDX54 Missense_Mutation p.L131F 0.09 deleterious(0) probably_damaging(0.984) TCGA-L5-A88S-01 12 132405711 132405711 G T ULK1 Missense_Mutation p.A1010S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A88S-01 12 132405712 132405712 C T ULK1 Missense_Mutation p.A1010V 0.20 deleterious(0) probably_damaging(0.999) TCGA-L5-A88S-01 12 3702913 3702913 C T PRMT8 3'UTR 0.08 TCGA-L5-A88S-01 12 4479523 4479523 C T FGF23 Missense_Mutation p.A248T 0.14 deleterious_low_confidence(0.01) benign(0.002) TCGA-L5-A88S-01 12 52385743 52385743 G A ACVR1B Missense_Mutation p.R494H 0.25 deleterious(0) possibly_damaging(0.891) TCGA-L5-A88S-01 12 6778331 6778331 C G ZNF384 Missense_Mutation p.D400H 0.13 deleterious(0) probably_damaging(0.998) TCGA-L5-A88S-01 12 7242061 7242061 G A C1R Missense_Mutation p.T198M 0.09 deleterious(0.01) probably_damaging(1) TCGA-L5-A88S-01 12 85546923 85546923 G T LRRIQ1 Missense_Mutation p.R1514I 0.24 deleterious(0) probably_damaging(0.921) TCGA-L5-A88S-01 13 101256470 101256470 C T TMTC4 3'UTR 0.38 TCGA-L5-A88S-01 13 76055775 76055775 C - TBC1D4 Frame_Shift_Del p.S44Rfs*39 0.35 TCGA-L5-A88S-01 14 101349583 101349583 C T RTL1 Missense_Mutation p.E515K 0.17 tolerated(0.07) benign(0.05) TCGA-L5-A88S-01 14 101531679 101531679 C T MIR409 RNA 0.24 TCGA-L5-A88S-01 14 20844365 20844365 T C TEP1 Silent p.E2049E 0.19 TCGA-L5-A88S-01 15 72063512 72063512 A G THSD4 Missense_Mutation p.E960G 0.24 deleterious(0) probably_damaging(0.968) TCGA-L5-A88S-01 16 1270643 1270643 C A CACNA1H Silent p.G2237G 0.26 TCGA-L5-A88S-01 16 27237089 27237089 G A NSMCE1 Missense_Mutation p.R227C 0.23 deleterious(0.05) possibly_damaging(0.868) TCGA-L5-A88S-01 16 3073311 3073311 G A HCFC1R1 Silent p.F68F 0.26 TCGA-L5-A88S-01 16 65319330 65319330 G A LINC00922 RNA 0.31 TCGA-L5-A88S-01 16 66514909 66514909 C G BEAN1 3'UTR 0.25 TCGA-L5-A88S-01 16 71765676 71765676 G C AP1G1 3'Flank 0.27 TCGA-L5-A88S-01 16 71976822 71976822 A T PKD1L3 RNA 0.34 TCGA-L5-A88S-01 16 88779139 88779139 T C CTU2 Missense_Mutation p.L188P 0.11 tolerated(0.3) benign(0.013) TCGA-L5-A88S-01 16 89924827 89924827 A G SPIRE2 Missense_Mutation p.D395G 0.14 tolerated(0.3) benign(0.008) TCGA-L5-A88S-01 17 10415473 10415473 G C MYH1 Missense_Mutation p.S395C 0.17 deleterious(0) possibly_damaging(0.906) TCGA-L5-A88S-01 17 10426976 10426976 A T MYH2 Missense_Mutation p.M1770K 0.39 deleterious(0.02) benign(0.305) TCGA-L5-A88S-01 17 18023165 18023165 G A MYO15A Missense_Mutation p.A351T 0.27 possibly_damaging(0.499) TCGA-L5-A88S-01 17 30816093 30816093 G A CDK5R1 3'UTR 0.43 TCGA-L5-A88S-01 17 30921477 30921477 G C MYO1D Intron 0.20 TCGA-L5-A88S-01 17 36891292 36891292 T C PCGF2 3'UTR 0.20 TCGA-L5-A88S-01 17 7576897 7576897 G A TP53 Nonsense_Mutation p.Q317* 0.45 TCGA-L5-A88S-01 18 21180238 21180238 A G ANKRD29 3'UTR 0.33 TCGA-L5-A88S-01 18 56202529 56202529 A G ALPK2 Silent p.P1630P 0.09 TCGA-L5-A88S-01 19 36218097 36218097 C T KMT2B Silent p.N1348N 0.26 TCGA-L5-A88S-01 19 37958719 37958719 C A ZNF570 5'Flank 0.34 TCGA-L5-A88S-01 19 48630558 48630558 G A LIG1 Silent p.F660F 0.51 TCGA-L5-A88S-01 19 50331715 50331715 C T MED25 Silent p.G105G 0.07 TCGA-L5-A88S-01 19 5144079 5144079 C T KDM4B Silent p.H884H 0.12 TCGA-L5-A88S-01 19 54743803 54743803 G A LILRA6 Missense_Mutation p.P428L 0.50 tolerated(0.05) benign(0.039) TCGA-L5-A88S-01 1 120512304 120512304 C T NOTCH2 Missense_Mutation p.G313D 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A88S-01 1 152188455 152188455 A T HRNR Missense_Mutation p.Y1884N 0.04 unknown(0) TCGA-L5-A88S-01 1 155041931 155041943 GGACTCTTCATGA - EFNA4 3'UTR 0.20 TCGA-L5-A88S-01 1 167741701 167741701 A T MPZL1 Missense_Mutation p.I150F 0.07 deleterious(0) probably_damaging(0.998) TCGA-L5-A88S-01 1 197097636 197097636 A C ASPM Missense_Mutation p.C974G 0.08 deleterious(0) probably_damaging(0.994) TCGA-L5-A88S-01 1 201196257 201196257 G A IGFN1 Silent p.P3678P 0.19 TCGA-L5-A88S-01 1 208227883 208227883 C A PLXNA2 Missense_Mutation p.Q913H 0.18 deleterious(0) possibly_damaging(0.606) TCGA-L5-A88S-01 1 226475417 226475417 G A LIN9 Missense_Mutation p.P132S 0.24 deleterious(0) probably_damaging(0.925) TCGA-L5-A88S-01 1 248636827 248636827 G A OR2T3 Missense_Mutation p.R59H 0.21 tolerated(0.61) benign(0.001) TCGA-L5-A88S-01 1 36028933 36028933 G A NCDN Missense_Mutation p.D506N 0.37 tolerated(0.46) benign(0.219) TCGA-L5-A88S-01 1 37948688 37948688 G C ZC3H12A Missense_Mutation p.D426H 0.07 deleterious(0.04) benign(0.049) TCGA-L5-A88S-01 1 52253063 52253063 A C OSBPL9 Missense_Mutation p.D690A 0.23 deleterious(0) probably_damaging(0.999) TCGA-L5-A88S-01 20 10579382 10579382 A G SLX4IP Missense_Mutation p.R100G 0.16 tolerated(0.43) benign(0.002) TCGA-L5-A88S-01 20 16474995 16474995 C T KIF16B Missense_Mutation p.V415I 0.15 tolerated(0.19) probably_damaging(0.998) TCGA-L5-A88S-01 20 20019078 20019078 T C CRNKL1 Missense_Mutation p.Y682C 0.17 deleterious(0.02) possibly_damaging(0.844) TCGA-L5-A88S-01 20 23066170 23066170 C T CD93 Silent p.A220A 0.20 TCGA-L5-A88S-01 20 61542393 61542393 T A DIDO1 Missense_Mutation p.K191M 0.13 possibly_damaging(0.838) TCGA-L5-A88S-01 20 9404406 9404406 G A PLCB4 Silent p.P765P 0.20 TCGA-L5-A88S-01 21 31002955 31002955 C T GRIK1-AS2 3'UTR 0.13 TCGA-L5-A88S-01 21 33765484 33765484 T C C21orf119 5'UTR 0.21 TCGA-L5-A88S-01 22 29533368 29533368 T G KREMEN1 Missense_Mutation p.S224A 0.24 tolerated(0.17) benign(0.005) TCGA-L5-A88S-01 2 109367786 109367786 T C RANBP2 Missense_Mutation p.L447S 0.22 tolerated(0.21) benign(0.006) TCGA-L5-A88S-01 2 120125868 120125868 C A DBI Silent p.G99G 0.23 TCGA-L5-A88S-01 2 158397600 158397600 A G ACVR1C Splice_Site p.X409_splice 0.16 TCGA-L5-A88S-01 2 165552272 165552272 T C COBLL1 Missense_Mutation p.I582V 0.17 tolerated(0.13) benign(0.114) TCGA-L5-A88S-01 2 199011706 199011706 G A PLCL1 3'UTR 0.34 TCGA-L5-A88S-01 2 201753762 201753762 C A PPIL3 5'UTR 0.14 TCGA-L5-A88S-01 2 230902054 230902054 C T SLC16A14 3'UTR 0.42 TCGA-L5-A88S-01 2 73215400 73215400 C T SFXN5 Silent p.P204P 0.24 TCGA-L5-A88S-01 3 133320154 133320154 T A TOPBP1 Missense_Mutation p.L1503F 0.23 tolerated(0.26) benign(0.019) TCGA-L5-A88S-01 3 170198523 170198523 C T SLC7A14 Missense_Mutation p.M516I 0.06 tolerated(0.28) benign(0.001) TCGA-L5-A88S-01 3 183823112 183823112 G A HTR3E Missense_Mutation p.R232Q 0.17 tolerated(0.5) benign(0.005) TCGA-L5-A88S-01 3 9789298 9789298 C T BRPF1 3'UTR 0.48 TCGA-L5-A88S-01 4 110901176 110901176 A G EGF Missense_Mutation p.D701G 0.35 deleterious(0.01) probably_damaging(0.984) TCGA-L5-A88S-01 4 115997643 115997643 G T NDST4 Missense_Mutation p.L184I 0.14 tolerated(0.33) benign(0.145) TCGA-L5-A88S-01 4 187629096 187629096 G - FAT1 Frame_Shift_Del p.S629Cfs*2 0.17 TCGA-L5-A88S-01 4 66189849 66189849 C T EPHA5 Missense_Mutation p.G1033R 0.30 tolerated(0.57) benign(0.436) TCGA-L5-A88S-01 4 84526805 84526805 C A AGPAT9 3'UTR 0.11 TCGA-L5-A88S-01 5 132088631 132088631 G A CCNI2 Missense_Mutation p.C360Y 0.17 tolerated(0.96) benign(0.314) TCGA-L5-A88S-01 5 136312100 136312100 G T SPOCK1 3'UTR 0.22 TCGA-L5-A88S-01 5 140235896 140235896 G A PCDHA10 Missense_Mutation p.R88Q 0.22 deleterious_low_confidence(0.02) probably_damaging(0.996) TCGA-L5-A88S-01 5 140589663 140589663 C T PCDHB12 Missense_Mutation p.S395F 0.24 deleterious_low_confidence(0) possibly_damaging(0.726) TCGA-L5-A88S-01 5 141233235 141233235 G A PCDH1 3'UTR 0.29 TCGA-L5-A88S-01 5 141335614 141335614 C T PCDH12 Silent p.A601A 0.21 TCGA-L5-A88S-01 5 32057775 32057775 G C PDZD2 Missense_Mutation p.D639H 0.08 deleterious(0) probably_damaging(1) TCGA-L5-A88S-01 5 55256372 55256372 T A IL6ST Silent p.T277T 0.21 TCGA-L5-A88S-01 5 75001600 75001601 - CA POC5 Frame_Shift_Ins p.E79Vfs*3 0.10 TCGA-L5-A88S-01 6 123319130 123319130 C T CLVS2 Missense_Mutation p.R70C 0.11 deleterious(0.01) probably_damaging(0.964) TCGA-L5-A88S-01 6 159621085 159621085 G A FNDC1 Missense_Mutation p.R121H 0.18 deleterious(0.04) unknown(0) TCGA-L5-A88S-01 6 32024678 32024678 C A TNXB Missense_Mutation p.D2610Y 0.17 benign(0.264) TCGA-L5-A88S-01 6 96651510 96651510 G A FUT9 Missense_Mutation p.R160H 0.13 tolerated(0.05) possibly_damaging(0.531) TCGA-L5-A88S-01 7 106822898 106822898 C A HBP1 Missense_Mutation p.Q84K 0.33 deleterious(0.01) possibly_damaging(0.638) TCGA-L5-A88S-01 7 107570010 107570010 A G LAMB1 Missense_Mutation p.M1531T 0.45 deleterious(0) possibly_damaging(0.722) TCGA-L5-A88S-01 7 123150076 123150076 A G IQUB Silent p.L137L 0.30 TCGA-L5-A88S-01 7 83634710 83634710 G C SEMA3A Silent p.V435V 0.33 TCGA-L5-A88S-01 7 88963404 88963404 C A ZNF804B Missense_Mutation p.P370T 0.10 tolerated(0.39) benign(0.017) TCGA-L5-A88S-01 7 91714250 91714250 T A AKAP9 Missense_Mutation p.I2943K 0.35 probably_damaging(0.999) TCGA-L5-A88S-01 7 98805040 98805040 C T KPNA7 Missense_Mutation p.R17Q 0.10 deleterious(0.03) probably_damaging(0.921) TCGA-L5-A88S-01 8 101734271 101734271 G C PABPC1 5'UTR 0.23 TCGA-L5-A88S-01 8 14412433 14412433 C G SGCZ Missense_Mutation p.M14I 0.21 tolerated(0.13) benign(0.005) TCGA-L5-A88S-01 8 30210335 30210335 C T TUBBP1 RNA 0.30 TCGA-L5-A88S-01 8 41836223 41836223 A G KAT6A Missense_Mutation p.I327T 0.20 probably_damaging(0.968) TCGA-L5-A88S-01 8 67716673 67716673 T A SGK3 Missense_Mutation p.F82I 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A88S-01 8 79514046 79514046 C A PKIA Missense_Mutation p.S74Y 0.19 deleterious(0.03) benign(0.14) TCGA-L5-A88S-01 8 91636035 91636035 C G TMEM64 3'UTR 0.29 TCGA-L5-A88S-01 X 105011645 105011645 T G IL1RAPL2 Missense_Mutation p.D684E 0.38 tolerated_low_confidence(0.69) probably_damaging(0.991) TCGA-L5-A88S-01 X 129536265 129536265 T C RBMX2 Silent p.N14N 0.38 TCGA-L5-A88S-01 X 144907135 144907135 G C SLITRK2 3'UTR 0.23 TCGA-L5-A88S-01 X 49033352 49033352 G A PRICKLE3 Silent p.G385G 0.64 TCGA-L5-A88T-01 10 115933864 115933864 C A C10orf118 5'UTR 0.10 TCGA-L5-A88T-01 10 125767331 125767331 C A CHST15 3'UTR 0.09 TCGA-L5-A88T-01 10 24835888 24835888 C T KIAA1217 3'UTR 0.06 TCGA-L5-A88T-01 10 34985330 34985331 - A PARD3 Frame_Shift_Ins p.Q47Tfs*16 0.11 TCGA-L5-A88T-01 10 37506796 37506796 A C ANKRD30A Missense_Mutation p.N1030T 0.09 deleterious(0) possibly_damaging(0.727) TCGA-L5-A88T-01 10 5784218 5784218 C T FAM208B Missense_Mutation p.T829M 0.05 tolerated(0.05) possibly_damaging(0.473) TCGA-L5-A88T-01 10 74236986 74236986 G A MICU1 Silent p.F227F 0.12 TCGA-L5-A88T-01 10 93621795 93621795 C A TNKS2 Missense_Mutation p.F1107L 0.08 deleterious(0) possibly_damaging(0.901) TCGA-L5-A88T-01 11 124294671 124294671 C A OR8B4 Missense_Mutation p.G33W 0.10 tolerated_low_confidence(0.1) possibly_damaging(0.908) TCGA-L5-A88T-01 12 104102305 104102305 T G STAB2 Missense_Mutation p.C1427G 0.05 deleterious(0) probably_damaging(0.998) TCGA-L5-A88T-01 12 16109898 16109898 G C DERA Silent p.V20V 0.09 TCGA-L5-A88T-01 12 404795 404795 G A KDM5A Missense_Mutation p.R1467W 0.05 deleterious(0) possibly_damaging(0.549) TCGA-L5-A88T-01 12 53874559 53874559 T - MAP3K12 3'Flank 0.12 TCGA-L5-A88T-01 12 63541108 63541108 T A AVPR1A 3'UTR 0.06 TCGA-L5-A88T-01 12 69746033 69746033 C T LYZ Missense_Mutation p.A112V 0.06 tolerated(0.32) benign(0.008) TCGA-L5-A88T-01 13 47012205 47012205 G A PPP1R2P4 RNA 0.16 TCGA-L5-A88T-01 13 52960252 52960252 C T THSD1 Missense_Mutation p.R364H 0.15 tolerated(0.54) benign(0.007) TCGA-L5-A88T-01 13 53277879 53277879 A G LECT1 Missense_Mutation p.C286R 0.16 deleterious(0) probably_damaging(0.998) TCGA-L5-A88T-01 13 53298171 53298171 C T LECT1 Silent p.E143E 0.16 TCGA-L5-A88T-01 13 74518163 74518163 C A KLF12 Missense_Mutation p.M26I 0.09 deleterious(0.01) benign(0.138) TCGA-L5-A88T-01 14 24910157 24910157 C T KHNYN 3'UTR 0.15 TCGA-L5-A88T-01 15 45713519 45713519 A G SPATA5L1 3'UTR 0.17 TCGA-L5-A88T-01 16 53279275 53279275 C T CHD9 Missense_Mutation p.P1028S 0.06 probably_damaging(1) TCGA-L5-A88T-01 17 3101038 3101038 G A OR1A2 Missense_Mutation p.V76I 0.08 deleterious(0.01) benign(0.052) TCGA-L5-A88T-01 17 36882619 36882619 C T MLLT6 3'UTR 0.14 TCGA-L5-A88T-01 17 5066217 5066217 G A USP6 Missense_Mutation p.R985K 0.08 tolerated_low_confidence(0.93) benign(0.034) TCGA-L5-A88T-01 17 61911902 61911902 C T SMARCD2 Missense_Mutation p.G285S 0.07 deleterious(0.02) benign(0.43) TCGA-L5-A88T-01 17 7106648 7106648 C T DLG4 Missense_Mutation p.G212D 0.10 deleterious(0.02) probably_damaging(1) TCGA-L5-A88T-01 18 74153868 74153868 C A ZNF516 Missense_Mutation p.Q381H 0.10 deleterious(0.01) possibly_damaging(0.736) TCGA-L5-A88T-01 19 20748596 20748596 C T ZNF737 5'Flank 0.07 TCGA-L5-A88T-01 19 33167156 33167156 C A ANKRD27 5'Flank 0.13 TCGA-L5-A88T-01 19 35800943 35800943 C T MAG Silent p.S466S 0.04 TCGA-L5-A88T-01 19 36134632 36134632 G C ETV2 Missense_Mutation p.R231P 0.05 tolerated(0.12) possibly_damaging(0.832) TCGA-L5-A88T-01 19 48565258 48565258 G A PLA2G4C Silent p.F428F 0.11 TCGA-L5-A88T-01 19 50785036 50785036 G A MYH14 Missense_Mutation p.M1492I 0.14 tolerated(0.32) benign(0.008) TCGA-L5-A88T-01 19 52273073 52273073 A C FPR2 3'UTR 0.09 TCGA-L5-A88T-01 19 55692949 55692949 A G PTPRH 3'UTR 0.22 TCGA-L5-A88T-01 19 57175168 57175168 C T ZNF835 Missense_Mutation p.V467M 0.09 deleterious(0) probably_damaging(0.966) TCGA-L5-A88T-01 19 58549469 58549469 G A ZSCAN1 Missense_Mutation p.A89T 0.11 deleterious(0.02) benign(0.22) TCGA-L5-A88T-01 1 145698977 145698977 C G CD160 Missense_Mutation p.V172L 0.07 tolerated(0.17) benign(0.039) TCGA-L5-A88T-01 1 179631288 179631288 A C TDRD5 Missense_Mutation p.D791A 0.13 tolerated(0.09) benign(0.119) TCGA-L5-A88T-01 1 182377033 182377033 A C LINC00272 RNA 0.11 TCGA-L5-A88T-01 1 207010152 207010152 G A IL19 Splice_Site p.X86_splice 0.09 TCGA-L5-A88T-01 1 39951255 39951255 G A MACF1 Missense_Mutation p.R5361Q 0.06 benign(0.038) TCGA-L5-A88T-01 1 59132753 59132753 G A MYSM1 Missense_Mutation p.P663L 0.05 deleterious(0) probably_damaging(0.998) TCGA-L5-A88T-01 1 75038472 75038472 A G C1orf173 Silent p.I974I 0.11 TCGA-L5-A88T-01 22 46708101 46708101 C T GTSE1 Missense_Mutation p.R276W 0.05 deleterious(0.02) probably_damaging(0.979) TCGA-L5-A88T-01 2 114691892 114691892 C G ACTR3 Missense_Mutation p.Q157E 0.11 tolerated(0.11) benign(0.003) TCGA-L5-A88T-01 2 131976381 131976381 C T POTEE Missense_Mutation p.R136C 0.06 deleterious_low_confidence(0.02) possibly_damaging(0.689) TCGA-L5-A88T-01 2 132021238 132021238 G A POTEE Missense_Mutation p.R737H 0.12 tolerated_low_confidence(0.5) benign(0.029) TCGA-L5-A88T-01 2 179428548 179428548 A G TTN Silent p.G27437G 0.06 TCGA-L5-A88T-01 2 179514281 179514281 C T TTN Missense_Mutation p.V13325M 0.05 TCGA-L5-A88T-01 2 179644145 179644145 A T TTN Silent p.I1258I 0.12 TCGA-L5-A88T-01 2 206305223 206305223 C G PARD3B Missense_Mutation p.N895K 0.06 tolerated(0.08) probably_damaging(0.998) TCGA-L5-A88T-01 2 31605937 31605937 T C XDH Missense_Mutation p.K323R 0.05 tolerated(0.16) benign(0.031) TCGA-L5-A88T-01 2 70443921 70443921 T C TIA1 Intron 0.14 TCGA-L5-A88T-01 3 170198789 170198789 G A SLC7A14 Missense_Mutation p.L428F 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-L5-A88T-01 3 184008930 184008930 A G ECE2 Missense_Mutation p.Q764R 0.09 tolerated(0.39) benign(0.004) TCGA-L5-A88T-01 4 103226180 103226180 C T SLC39A8 Missense_Mutation p.R214K 0.09 tolerated(1) benign(0.402) TCGA-L5-A88T-01 4 155749572 155749572 A T RBM46 3'UTR 0.05 TCGA-L5-A88T-01 4 187538272 187538272 T A FAT1 Nonsense_Mutation p.K2988* 0.15 TCGA-L5-A88T-01 4 69513073 69513073 T C UGT2B15 Missense_Mutation p.R448G 0.05 deleterious(0.01) benign(0.018) TCGA-L5-A88T-01 5 45645328 45645328 G A HCN1 Nonsense_Mutation p.R270* 0.16 TCGA-L5-A88T-01 5 58489358 58489358 C T PDE4D Missense_Mutation p.G218R 0.09 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-L5-A88T-01 6 105232975 105232975 C A HACE1 Missense_Mutation p.A432S 0.06 tolerated(0.5) benign(0.001) TCGA-L5-A88T-01 6 126251662 126251662 T C NCOA7 3'UTR 0.09 TCGA-L5-A88T-01 6 133032958 133032958 A C VNN1 Silent p.T77T 0.06 TCGA-L5-A88T-01 6 142718824 142718824 A C GPR126 Missense_Mutation p.K500T 0.09 tolerated(0.08) benign(0.329) TCGA-L5-A88T-01 6 39513390 39513390 C T KIF6 Missense_Mutation p.R419H 0.05 deleterious(0.01) benign(0.191) TCGA-L5-A88T-01 6 41077455 41077455 G C ADCY10P1 RNA 0.05 TCGA-L5-A88T-01 6 45917041 45917041 T C CLIC5 Missense_Mutation p.D243G 0.05 deleterious(0) probably_damaging(0.999) TCGA-L5-A88T-01 6 73000537 73000537 C T RIMS1 Missense_Mutation p.S1237L 0.09 deleterious(0.02) possibly_damaging(0.52) TCGA-L5-A88T-01 7 19015467 19015467 A C HDAC9 Silent p.R1021R 0.08 TCGA-L5-A88T-01 7 19765325 19765325 G A TMEM196 Missense_Mutation p.R91W 0.04 deleterious(0) possibly_damaging(0.835) TCGA-L5-A88T-01 7 20452225 20452225 A G ITGB8 3'UTR 0.11 TCGA-L5-A88T-01 7 66104098 66104098 C T KCTD7 Missense_Mutation p.T250M 0.11 tolerated(0.76) benign(0.197) TCGA-L5-A88T-01 8 102699596 102699596 C G NCALD 3'UTR 0.05 TCGA-L5-A88T-01 8 104987676 104987676 C T RIMS2 Nonsense_Mutation p.R957* 0.09 TCGA-L5-A88T-01 8 113504850 113504850 C T CSMD3 Missense_Mutation p.D1716N 0.07 deleterious(0.05) probably_damaging(0.992) TCGA-L5-A88T-01 8 119941026 119941026 G A TNFRSF11B Silent p.H181H 0.08 TCGA-L5-A88T-01 8 124089435 124089435 C T TBC1D31 Silent p.G54G 0.09 TCGA-L5-A88T-01 8 53853167 53853167 C T NPBWR1 Missense_Mutation p.R234W 0.07 deleterious(0) possibly_damaging(0.863) TCGA-L5-A88T-01 8 77778741 77778741 A T ZFHX4 3'UTR 0.08 TCGA-L5-A88T-01 9 116840418 116840418 C T AMBP Silent p.T24T 0.12 TCGA-L5-A88T-01 9 139410452 139410452 G C NOTCH1 Nonsense_Mutation p.Y550* 0.15 TCGA-L5-A88T-01 9 96428105 96428105 C T PHF2 Missense_Mutation p.P692L 0.06 deleterious(0.04) unknown(0) TCGA-L5-A88T-01 X 114425012 114425012 G A RBMXL3 Silent p.S336S 0.10 TCGA-L5-A88T-01 X 11682517 11682517 G A ARHGAP6 Silent p.A144A 0.05 TCGA-L5-A88T-01 X 151130908 151130908 A C GABRE Missense_Mutation p.L184V 0.05 deleterious(0) probably_damaging(0.987) TCGA-L5-A88T-01 X 155005260 155005260 C T SPRY3 3'UTR 0.05 TCGA-L5-A88T-01 X 1712984 1712984 G A AKAP17A Missense_Mutation p.G210E 0.07 tolerated(0.14) probably_damaging(0.992) TCGA-L5-A88T-01 X 30261637 30261637 T C MAGEB4 3'UTR 0.14 TCGA-L5-A88V-01 10 118435975 118435975 C T HSPA12A Missense_Mutation p.R442Q 0.28 deleterious(0.01) possibly_damaging(0.674) TCGA-L5-A88V-01 10 124390555 124390555 C A DMBT1 Missense_Mutation p.T1906N 0.39 tolerated(0.23) probably_damaging(0.95) TCGA-L5-A88V-01 10 124810675 124810675 G A ACADSB Silent p.A367A 0.32 TCGA-L5-A88V-01 10 124895957 124895957 C T HMX3 Nonsense_Mutation p.R131* 0.35 TCGA-L5-A88V-01 10 127734653 127734653 C A ADAM12 Nonsense_Mutation p.E659* 0.44 TCGA-L5-A88V-01 10 12802957 12802957 G A CAMK1D Missense_Mutation p.G104R 0.21 deleterious(0.04) probably_damaging(0.997) TCGA-L5-A88V-01 10 15256431 15256431 C T FAM171A1 Missense_Mutation p.E386K 0.11 deleterious(0.01) benign(0.35) TCGA-L5-A88V-01 10 60577321 60577321 G A BICC1 Splice_Site p.X845_splice 0.29 TCGA-L5-A88V-01 10 62332353 62332353 G C ANK3 5'UTR 0.21 TCGA-L5-A88V-01 10 65359025 65359025 T A REEP3 Silent p.A133A 0.16 TCGA-L5-A88V-01 10 72639529 72639529 T C SGPL1 3'UTR 0.11 TCGA-L5-A88V-01 10 73767768 73767768 G T CHST3 Missense_Mutation p.D327Y 0.38 deleterious(0.04) benign(0.352) TCGA-L5-A88V-01 10 90074274 90074274 C T RNLS Silent p.P275P 0.32 TCGA-L5-A88V-01 10 90342968 90342968 C T RNLS 5'UTR 0.38 TCGA-L5-A88V-01 11 12183842 12183842 G T MICAL2 Missense_Mutation p.R47I 0.34 deleterious(0) possibly_damaging(0.772) TCGA-L5-A88V-01 11 17634199 17634199 G A OTOG Missense_Mutation p.V2121M 0.86 probably_damaging(0.97) TCGA-L5-A88V-01 11 1907990 1907990 G A LSP1 Missense_Mutation p.R377H 0.81 deleterious_low_confidence(0) probably_damaging(1) TCGA-L5-A88V-01 11 209369 209369 G A RIC8A Intron 0.85 TCGA-L5-A88V-01 11 27742138 27742138 C T RP11-587D21.4 Intron 0.50 TCGA-L5-A88V-01 11 55406281 55406281 G T OR4P4 Nonsense_Mutation p.G150* 0.94 TCGA-L5-A88V-01 11 55595135 55595135 C A OR5L2 Nonsense_Mutation p.C147* 0.34 TCGA-L5-A88V-01 11 57068026 57068026 C T TNKS1BP1 Silent p.K1726K 0.88 TCGA-L5-A88V-01 11 5878912 5878912 C T OR52E8 Silent p.T7T 0.80 TCGA-L5-A88V-01 11 67395621 67395621 G A NUDT8 Silent p.P169P 0.90 TCGA-L5-A88V-01 11 70317377 70317377 A C SHANK2 3'UTR 0.35 TCGA-L5-A88V-01 11 71942174 71942174 G C INPPL1 Missense_Mutation p.E480Q 0.36 deleterious(0.01) probably_damaging(0.922) TCGA-L5-A88V-01 12 104698038 104698038 C A EID3 Nonsense_Mutation p.S109* 0.77 TCGA-L5-A88V-01 12 124332541 124332541 G A DNAH10 Missense_Mutation p.G1832S 0.51 probably_damaging(1) TCGA-L5-A88V-01 12 127229599 127229599 T C LINC00943 RNA 0.23 TCGA-L5-A88V-01 12 132681700 132681700 C T GALNT9 Silent p.S222S 0.18 TCGA-L5-A88V-01 12 40760823 40760823 T A LRRK2 Missense_Mutation p.V2469D 0.05 deleterious(0) possibly_damaging(0.674) TCGA-L5-A88V-01 12 4479524 4479524 G A FGF23 Silent p.F247F 0.50 TCGA-L5-A88V-01 12 51855063 51855063 C G SLC4A8 Missense_Mutation p.I363M 0.12 deleterious(0.01) possibly_damaging(0.744) TCGA-L5-A88V-01 12 52099240 52099240 G A SCN8A Missense_Mutation p.V392I 0.44 deleterious(0) probably_damaging(0.99) TCGA-L5-A88V-01 12 55421010 55421010 T G NEUROD4 Missense_Mutation p.F263V 0.13 deleterious(0) probably_damaging(0.91) TCGA-L5-A88V-01 12 56512094 56512094 C T ZC3H10 5'UTR 0.68 TCGA-L5-A88V-01 12 64895435 64895435 A G TBK1 3'UTR 0.19 TCGA-L5-A88V-01 12 78400555 78400555 G A NAV3 Missense_Mutation p.D413N 0.04 tolerated_low_confidence(0.22) benign(0.108) TCGA-L5-A88V-01 13 108861355 108861355 A T LIG4 Missense_Mutation p.F754L 0.48 tolerated(0.33) benign(0.157) TCGA-L5-A88V-01 13 27645219 27645219 C T USP12 Missense_Mutation p.D334N 0.41 tolerated(0.06) possibly_damaging(0.529) TCGA-L5-A88V-01 13 33110759 33110759 G A N4BP2L2 Intron 0.13 TCGA-L5-A88V-01 13 39613842 39613842 G A NHLRC3 Missense_Mutation p.G127R 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A88V-01 13 43900600 43900600 C T ENOX1 Silent p.S366S 0.16 TCGA-L5-A88V-01 13 46559748 46559748 C T ZC3H13 Silent p.R468R 0.33 TCGA-L5-A88V-01 14 20483260 20483261 - A OR4K14 Frame_Shift_Ins p.F32Lfs*11 0.15 TCGA-L5-A88V-01 14 24612868 24612868 C T PSME2 Missense_Mutation p.A189T 0.27 tolerated(0.93) benign(0.019) TCGA-L5-A88V-01 14 35871245 35871246 AC - NFKBIA Frame_Shift_Del p.F310Wfs*30 0.45 TCGA-L5-A88V-01 14 51107485 51107485 G A SAV1 Silent p.Y311Y 0.25 TCGA-L5-A88V-01 14 80328966 80328966 C A NRXN3 3'Flank 0.17 TCGA-L5-A88V-01 14 92960068 92960068 G A SLC24A4 3'UTR 0.39 TCGA-L5-A88V-01 14 94187802 94187802 G A PRIMA1 Silent p.N150N 0.31 TCGA-L5-A88V-01 15 33954404 33954404 A C RYR3 Missense_Mutation p.H1558P 0.30 probably_damaging(0.998) TCGA-L5-A88V-01 15 44961491 44961491 G A PATL2 Nonsense_Mutation p.Q351* 0.15 TCGA-L5-A88V-01 15 48064407 48064408 - A SEMA6D 3'UTR 0.50 TCGA-L5-A88V-01 15 49776663 49776663 C T FGF7 Nonsense_Mutation p.Q183* 0.38 TCGA-L5-A88V-01 15 59408989 59408989 T C CCNB2 Missense_Mutation p.F233S 0.31 deleterious(0) probably_damaging(1) TCGA-L5-A88V-01 15 60789551 60789551 G A RORA 3'UTR 0.35 TCGA-L5-A88V-01 15 66806415 66806415 A G ZWILCH Silent p.E65E 0.06 TCGA-L5-A88V-01 15 79764012 79764012 C A KIAA1024 3'UTR 0.44 TCGA-L5-A88V-01 16 1272838 1272838 G T TPSG1 Missense_Mutation p.Q109K 0.66 tolerated(0.15) benign(0.003) TCGA-L5-A88V-01 16 2980438 2980438 G A FLYWCH1 Missense_Mutation p.R117K 0.50 tolerated(0.35) benign(0.019) TCGA-L5-A88V-01 16 29856136 29856136 G A MVP Missense_Mutation p.A653T 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-L5-A88V-01 16 4245563 4245563 G T SRL Missense_Mutation p.Q201K 0.27 tolerated(0.6) probably_damaging(0.958) TCGA-L5-A88V-01 16 4311926 4311926 G A TFAP4 Nonsense_Mutation p.R127* 0.31 TCGA-L5-A88V-01 16 51174769 51174769 G A SALL1 Missense_Mutation p.A455V 0.60 deleterious(0) probably_damaging(0.931) TCGA-L5-A88V-01 16 51175993 51175993 C T SALL1 Missense_Mutation p.R47Q 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-L5-A88V-01 16 81412637 81412637 A T GAN 3'UTR 0.75 TCGA-L5-A88V-01 16 83841608 83841608 C A HSBP1 5'UTR 0.24 TCGA-L5-A88V-01 16 87636607 87636607 C T JPH3 5'UTR 0.22 TCGA-L5-A88V-01 17 19451353 19451353 T C SLC47A1 Missense_Mutation p.L121P 0.53 deleterious(0) probably_damaging(0.999) TCGA-L5-A88V-01 17 36613662 36613662 G A ARHGAP23 Intron 0.36 TCGA-L5-A88V-01 17 36892390 36892390 C T PCGF2 Missense_Mutation p.E204K 0.35 deleterious(0) benign(0.014) TCGA-L5-A88V-01 17 36892391 36892391 C A PCGF2 Missense_Mutation p.K203N 0.35 tolerated(0.07) benign(0.04) TCGA-L5-A88V-01 17 36923634 36923634 G A PIP4K2B 3'UTR 0.74 TCGA-L5-A88V-01 17 37008985 37008985 C G RPL23 Missense_Mutation p.G33A 0.88 deleterious(0) probably_damaging(0.971) TCGA-L5-A88V-01 17 37009683 37009683 C G RPL23 Intron 0.89 TCGA-L5-A88V-01 17 37309219 37309219 C T PLXDC1 5'Flank 0.81 TCGA-L5-A88V-01 17 37309307 37309307 C T PLXDC1 5'Flank 0.79 TCGA-L5-A88V-01 17 37309412 37309412 C T PLXDC1 5'Flank 0.81 TCGA-L5-A88V-01 17 37309414 37309414 C T PLXDC1 5'Flank 0.81 TCGA-L5-A88V-01 17 37316924 37316924 C T ARL5C Silent p.E137E 0.85 TCGA-L5-A88V-01 17 37879610 37879610 T A ERBB2 Missense_Mutation p.L662Q 0.25 deleterious(0) probably_damaging(0.973) TCGA-L5-A88V-01 17 49731019 49731019 C T CA10 Missense_Mutation p.V182I 0.57 tolerated(0.65) benign(0.004) TCGA-L5-A88V-01 17 56397906 56397906 C T BZRAP1 Missense_Mutation p.V487M 0.59 deleterious(0.02) possibly_damaging(0.484) TCGA-L5-A88V-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.71 deleterious(0) probably_damaging(1) TCGA-L5-A88V-01 17 79412646 79412646 C T RP11-1055B8.7 Silent p.S1034S 0.52 TCGA-L5-A88V-01 17 8215725 8215725 C T ARHGEF15 Missense_Mutation p.P123L 0.87 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-L5-A88V-01 18 13652493 13652494 - T LDLRAD4 3'UTR 0.65 TCGA-L5-A88V-01 18 25570060 25570060 C A CDH2 Splice_Site p.X533_splice 0.31 TCGA-L5-A88V-01 18 25570148 25570148 A T CDH2 Missense_Mutation p.I504N 0.41 deleterious(0) probably_damaging(0.909) TCGA-L5-A88V-01 18 44065079 44065079 C T LOXHD1 Missense_Mutation p.E918K 0.33 tolerated(0.19) possibly_damaging(0.64) TCGA-L5-A88V-01 18 5478309 5478309 G T EPB41L3 Silent p.V104V 0.16 TCGA-L5-A88V-01 18 6959479 6959479 C T LAMA1 Missense_Mutation p.V2547I 0.70 tolerated(1) benign(0.002) TCGA-L5-A88V-01 18 70502344 70502344 A G NETO1 Intron 0.50 TCGA-L5-A88V-01 18 70502365 70502365 T C NETO1 Intron 0.39 TCGA-L5-A88V-01 18 71740726 71740762 TTTTGCGATACTAAGATAAAGGACCAGGTTGACAATA AAAGGACCAGGTTGACAAT FBXO15 In_Frame_Del p.I490_K501delinsLSTWSF 0.41 TCGA-L5-A88V-01 18 71740762 71740762 A - FBXO15 Frame_Shift_Del p.I490Lfs*32 0.33 TCGA-L5-A88V-01 18 71790608 71790609 TT - FBXO15 Frame_Shift_Del p.K378Efs*5 0.34 TCGA-L5-A88V-01 19 1107919 1107920 AA TAG SBNO2 3'UTR 0.41 TCGA-L5-A88V-01 19 11918675 11918675 C T ZNF491 3'UTR 0.62 TCGA-L5-A88V-01 19 15061158 15061158 C G SLC1A6 Missense_Mutation p.G515A 0.11 tolerated(0.34) probably_damaging(0.998) TCGA-L5-A88V-01 19 17942130 17942130 T A JAK3 Missense_Mutation p.H962L 0.33 tolerated(0.74) probably_damaging(0.965) TCGA-L5-A88V-01 19 29213649 29213649 C T AC005307.3 RNA 0.58 TCGA-L5-A88V-01 19 38877401 38877401 G A GGN Silent p.P167P 0.38 TCGA-L5-A88V-01 19 41096671 41096671 C A SHKBP1 Missense_Mutation p.L602M 0.27 deleterious(0) probably_damaging(0.993) TCGA-L5-A88V-01 19 41754709 41754709 T C AXL Silent p.A565A 0.26 TCGA-L5-A88V-01 19 43376079 43376079 A G PSG1 Silent p.N183N 0.28 TCGA-L5-A88V-01 19 46330851 46330851 G A SYMPK Nonsense_Mutation p.R700* 0.30 TCGA-L5-A88V-01 19 52222715 52222715 C T HAS1 Missense_Mutation p.R149H 0.12 tolerated(0.15) benign(0.025) TCGA-L5-A88V-01 19 53571188 53571188 T A ZNF160 3'UTR 0.28 TCGA-L5-A88V-01 19 53571189 53571189 C A ZNF160 3'UTR 0.28 TCGA-L5-A88V-01 19 58420048 58420048 G A ZNF417 Missense_Mutation p.S533F 0.08 deleterious(0.04) benign(0.142) TCGA-L5-A88V-01 19 9763683 9763683 G C ZNF562 Missense_Mutation p.T408S 0.60 tolerated(0.06) possibly_damaging(0.518) TCGA-L5-A88V-01 1 100626108 100626108 C T LRRC39 Missense_Mutation p.E45K 0.37 deleterious(0.02) possibly_damaging(0.547) TCGA-L5-A88V-01 1 104116391 104116391 C G AMY2B Missense_Mutation p.S192C 0.36 deleterious(0.01) possibly_damaging(0.735) TCGA-L5-A88V-01 1 108113993 108113993 A T VAV3 3'UTR 0.15 TCGA-L5-A88V-01 1 113212706 113212706 G A CAPZA1 Nonsense_Mutation p.W271* 0.50 TCGA-L5-A88V-01 1 114269063 114269063 T C PHTF1 Silent p.G155G 0.74 TCGA-L5-A88V-01 1 115604801 115604801 G A TSPAN2 Silent p.F75F 0.33 TCGA-L5-A88V-01 1 12351120 12351120 G C VPS13D Missense_Mutation p.E1931Q 0.43 possibly_damaging(0.782) TCGA-L5-A88V-01 1 12918962 12918962 G A PRAMEF2 Missense_Mutation p.R33K 0.38 tolerated(0.98) benign(0.229) TCGA-L5-A88V-01 1 13308 13308 T G DDX11L1 RNA 0.15 TCGA-L5-A88V-01 1 151779873 151779873 A G RORC 3'UTR 0.06 TCGA-L5-A88V-01 1 152056620 152056620 A T TCHHL1 3'UTR 0.18 TCGA-L5-A88V-01 1 152636848 152636848 C T LCE2D Silent p.P89P 0.29 TCGA-L5-A88V-01 1 156639758 156639771 CCCCATCTCGATCC - NES Nonsense_Mutation p.W1403* 0.33 TCGA-L5-A88V-01 1 16451426 16451426 G A EPHA2 3'UTR 0.41 TCGA-L5-A88V-01 1 181732596 181732596 C T CACNA1E Missense_Mutation p.R1582C 0.39 deleterious(0) possibly_damaging(0.898) TCGA-L5-A88V-01 1 181732614 181732614 C T CACNA1E Missense_Mutation p.R1588C 0.25 deleterious(0) possibly_damaging(0.898) TCGA-L5-A88V-01 1 200377974 200377974 C A ZNF281 Missense_Mutation p.R287I 0.47 deleterious(0) probably_damaging(0.998) TCGA-L5-A88V-01 1 204192692 204192692 G T PLEKHA6 Missense_Mutation p.P1018H 0.59 deleterious(0) probably_damaging(0.999) TCGA-L5-A88V-01 1 216256830 216256830 C T USH2A Missense_Mutation p.V1756I 0.22 benign(0.002) TCGA-L5-A88V-01 1 227153066 227153066 C T ADCK3 Silent p.A181A 0.62 TCGA-L5-A88V-01 1 233802494 233802494 T A KCNK1 Missense_Mutation p.I170N 0.21 tolerated(0.31) benign(0.009) TCGA-L5-A88V-01 1 235409746 235409748 TCT - ARID4B In_Frame_Del p.R145del 0.28 TCGA-L5-A88V-01 1 237947132 237947132 G C RYR2 Missense_Mutation p.K4040N 0.07 probably_damaging(0.917) TCGA-L5-A88V-01 1 24857853 24857853 G A RCAN3 Missense_Mutation p.G114E 0.39 tolerated(0.19) probably_damaging(1) TCGA-L5-A88V-01 1 249142293 249142293 C T ZNF672 Missense_Mutation p.R274W 0.32 deleterious(0) probably_damaging(0.91) TCGA-L5-A88V-01 1 2938365 2938365 G A ACTRT2 Missense_Mutation p.V39M 0.32 deleterious(0.03) possibly_damaging(0.647) TCGA-L5-A88V-01 1 33412075 33412075 C T RNF19B Silent p.V359V 0.34 TCGA-L5-A88V-01 1 3563998 3563998 C T WRAP73 Missense_Mutation p.A66T 0.26 deleterious(0.05) possibly_damaging(0.657) TCGA-L5-A88V-01 1 45807158 45807158 C T TOE1 Missense_Mutation p.R84C 0.26 deleterious(0.04) possibly_damaging(0.734) TCGA-L5-A88V-01 1 70385058 70385058 C A LRRC7 Intron 0.31 TCGA-L5-A88V-01 1 84703899 84703899 C T PRKACB 3'UTR 0.37 TCGA-L5-A88V-01 1 95005863 95005863 A T F3 Silent p.I54I 0.36 TCGA-L5-A88V-01 20 16360078 16360078 C T KIF16B Missense_Mutation p.E857K 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.759) TCGA-L5-A88V-01 20 23383645 23383645 C G NAPB Missense_Mutation p.A55P 0.24 deleterious(0) possibly_damaging(0.885) TCGA-L5-A88V-01 20 2686365 2686365 G A EBF4 Missense_Mutation p.V90M 0.18 deleterious(0) probably_damaging(0.971) TCGA-L5-A88V-01 20 44681697 44681697 G A SLC12A5 Missense_Mutation p.D850N 0.33 deleterious(0) probably_damaging(1) TCGA-L5-A88V-01 20 45865232 45865232 G A ZMYND8 Silent p.S852S 0.10 TCGA-L5-A88V-01 20 4834289 4834289 A G SLC23A2 3'UTR 0.38 TCGA-L5-A88V-01 20 61926504 61926504 G A COL20A1 Silent p.L15L 0.20 TCGA-L5-A88V-01 21 34106908 34106908 G A PAXBP1 3'UTR 0.80 TCGA-L5-A88V-01 21 34927065 34927065 C A SON Missense_Mutation p.S1843Y 0.65 unknown(0) TCGA-L5-A88V-01 21 46078252 46078252 C G KRTAP12-3 3'UTR 0.55 TCGA-L5-A88V-01 22 20640840 20640840 G A AC011718.2 Intron 0.09 TCGA-L5-A88V-01 22 21157593 21157593 A T PI4KA Missense_Mutation p.C493S 0.16 tolerated(0.1) benign(0.014) TCGA-L5-A88V-01 22 29650196 29650196 A G EMID1 Missense_Mutation p.E375G 0.06 deleterious(0.01) benign(0.14) TCGA-L5-A88V-01 22 32909633 32909633 G A SYN3 3'UTR 0.52 TCGA-L5-A88V-01 22 38690402 38690402 G A CSNK1E Missense_Mutation p.R342C 0.91 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-L5-A88V-01 2 121106818 121106818 C T INHBB Missense_Mutation p.R198W 0.51 deleterious(0.02) probably_damaging(0.96) TCGA-L5-A88V-01 2 128062681 128062681 T C MAP3K2 3'UTR 0.16 TCGA-L5-A88V-01 2 131975932 131975932 C T POTEE 5'UTR 0.28 TCGA-L5-A88V-01 2 135911238 135911238 C T RAB3GAP1 Missense_Mutation p.S694F 0.17 tolerated(0.88) benign(0.002) TCGA-L5-A88V-01 2 152466583 152466583 G A NEB Nonsense_Mutation p.Q4024* 0.33 TCGA-L5-A88V-01 2 160734874 160734874 G A LY75-CD302 Missense_Mutation p.R579W 0.15 tolerated(0.09) benign(0.409) TCGA-L5-A88V-01 2 177016482 177016482 G A HOXD4 Missense_Mutation p.A41T 0.10 tolerated(0.39) benign(0.003) TCGA-L5-A88V-01 2 179434879 179434879 C T TTN Missense_Mutation p.R25327K 0.41 TCGA-L5-A88V-01 2 179593369 179593369 A T TTN Missense_Mutation p.S6428R 0.08 TCGA-L5-A88V-01 2 196600753 196600753 C T SLC39A10 3'UTR 0.50 TCGA-L5-A88V-01 2 197643772 197643772 A C GTF3C3 Missense_Mutation p.V413G 0.26 tolerated(0.13) benign(0.065) TCGA-L5-A88V-01 2 224746742 224746742 G C WDFY1 Missense_Mutation p.S327R 0.48 tolerated(0.06) benign(0.038) TCGA-L5-A88V-01 2 238820543 238820543 C T RAMP1 3'UTR 0.42 TCGA-L5-A88V-01 2 241818302 241818302 G A AGXT 3'UTR 0.40 TCGA-L5-A88V-01 2 26698861 26698861 C A OTOF Missense_Mutation p.S971I 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A88V-01 2 50574689 50574689 G A NRXN1 Intron 0.18 TCGA-L5-A88V-01 2 53897428 53897428 A C GPR75-ASB3 3'Flank 0.48 TCGA-L5-A88V-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.17 TCGA-L5-A88V-01 2 90198914 90198914 G T IGKV1D-12 Missense_Mutation p.Q25H 0.40 deleterious(0.04) possibly_damaging(0.864) TCGA-L5-A88V-01 3 123632907 123632907 T C CCDC14 3'Flank 0.18 TCGA-L5-A88V-01 3 124303534 124303534 C G KALRN 5'UTR 0.56 TCGA-L5-A88V-01 3 128753059 128753059 G A EFCC1 Missense_Mutation p.G446S 0.16 tolerated(0.91) benign(0.008) TCGA-L5-A88V-01 3 142561781 142561781 T A PCOLCE2 Silent p.V186V 0.22 TCGA-L5-A88V-01 3 153203846 153203846 C A C3orf79 Missense_Mutation p.P59T 0.30 tolerated_low_confidence(0.43) possibly_damaging(0.803) TCGA-L5-A88V-01 3 155198178 155198178 G T PLCH1 3'UTR 0.25 TCGA-L5-A88V-01 3 155198221 155198221 G A PLCH1 3'UTR 0.11 TCGA-L5-A88V-01 3 155198837 155198837 A T PLCH1 Missense_Mutation p.F1668I 0.18 tolerated_low_confidence(0.05) benign(0.019) TCGA-L5-A88V-01 3 176740158 176740169 GAAATTAAGAGT A TBL1XR1 3'UTR 0.52 TCGA-L5-A88V-01 3 190572893 190572893 G A GMNC 3'UTR 0.53 TCGA-L5-A88V-01 3 196857506 196857506 C T DLG1 Missense_Mutation p.E386K 0.49 deleterious(0.02) benign(0.197) TCGA-L5-A88V-01 3 28364075 28364075 C G CMC1 3'UTR 0.74 TCGA-L5-A88V-01 3 33406164 33406164 G A FBXL2 Silent p.R81R 0.49 TCGA-L5-A88V-01 3 45588891 45588891 C G LARS2 Missense_Mutation p.R861G 0.58 tolerated(0.21) benign(0.001) TCGA-L5-A88V-01 4 110223107 110223107 G A COL25A1 Silent p.A23A 0.16 TCGA-L5-A88V-01 4 113574379 113574379 C T LARP7 Silent p.L528L 0.16 TCGA-L5-A88V-01 4 125592765 125592765 C T ANKRD50 Missense_Mutation p.G556D 0.41 deleterious(0.02) probably_damaging(0.997) TCGA-L5-A88V-01 4 147442807 147442807 A G SLC10A7 Silent p.A21A 0.62 TCGA-L5-A88V-01 4 186329540 186329540 C T UFSP2 Missense_Mutation p.R294H 0.25 tolerated(0.18) benign(0.048) TCGA-L5-A88V-01 4 2065507 2065507 G A NAT8L Missense_Mutation p.V188M 0.57 deleterious(0.02) possibly_damaging(0.826) TCGA-L5-A88V-01 4 73968200 73968200 C A ANKRD17 Missense_Mutation p.R1489M 0.74 possibly_damaging(0.707) TCGA-L5-A88V-01 4 85593974 85593974 C A WDFY3 3'UTR 0.77 TCGA-L5-A88V-01 5 112175951 112175952 - A APC Frame_Shift_Ins p.T1556Nfs*3 0.42 TCGA-L5-A88V-01 5 131039772 131039772 T G FNIP1 Missense_Mutation p.S368R 0.35 deleterious(0.02) possibly_damaging(0.743) TCGA-L5-A88V-01 5 133326757 133326757 A G VDAC1 Missense_Mutation p.L69P 0.39 deleterious(0) probably_damaging(0.998) TCGA-L5-A88V-01 5 133916451 133916451 G A JADE2 3'UTR 0.76 TCGA-L5-A88V-01 5 141974989 141974989 A G FGF1 Missense_Mutation p.Y112H 0.07 deleterious(0) probably_damaging(0.984) TCGA-L5-A88V-01 5 158139190 158139190 G A EBF1 Silent p.N507N 0.37 TCGA-L5-A88V-01 5 23510026 23510026 C T PRDM9 Intron 0.31 TCGA-L5-A88V-01 5 3599749 3599749 C T IRX1 Silent p.D229D 0.38 TCGA-L5-A88V-01 5 41155094 41155094 T A C6 Missense_Mutation p.Q694L 0.50 deleterious(0.02) benign(0.029) TCGA-L5-A88V-01 5 53814766 53814766 G A SNX18 Silent p.P328P 0.76 TCGA-L5-A88V-01 5 71495042 71495042 G A MAP1B Missense_Mutation p.G1954R 0.31 possibly_damaging(0.606) TCGA-L5-A88V-01 6 114378489 114378489 G A HS3ST5 Missense_Mutation p.R325C 0.58 tolerated(0.15) benign(0.009) TCGA-L5-A88V-01 6 12126085 12126085 G A HIVEP1 Nonsense_Mutation p.W2019* 0.51 TCGA-L5-A88V-01 6 152644758 152644758 C T SYNE1 Missense_Mutation p.V5258I 0.64 benign(0) TCGA-L5-A88V-01 6 15487651 15487651 C T JARID2 Missense_Mutation p.R262W 0.45 deleterious_low_confidence(0) possibly_damaging(0.852) TCGA-L5-A88V-01 6 168227370 168227370 C A MLLT4 5'Flank 0.51 TCGA-L5-A88V-01 6 17675153 17675153 G A NUP153 Nonsense_Mutation p.R279* 0.12 TCGA-L5-A88V-01 6 24547415 24547415 C A KIAA0319 Missense_Mutation p.S1066I 0.26 deleterious(0.01) possibly_damaging(0.646) TCGA-L5-A88V-01 6 27799101 27799101 C G HIST1H4K Missense_Mutation p.D69H 0.33 deleterious(0.02) possibly_damaging(0.898) TCGA-L5-A88V-01 6 34003798 34003798 C T GRM4 Missense_Mutation p.A697T 0.44 tolerated(0.74) possibly_damaging(0.833) TCGA-L5-A88V-01 6 50811165 50811165 T A TFAP2B 3'UTR 0.20 TCGA-L5-A88V-01 6 53138125 53138125 G A ELOVL5 Missense_Mutation p.L199F 0.27 tolerated(0.08) benign(0.105) TCGA-L5-A88V-01 6 54806542 54806542 C T FAM83B Nonsense_Mutation p.R925* 0.31 TCGA-L5-A88V-01 6 70034887 70034887 A C BAI3 Silent p.R980R 0.23 TCGA-L5-A88V-01 6 75795087 75795087 C T COL12A1 3'UTR 0.17 TCGA-L5-A88V-01 6 99849058 99849058 T G PNISR Missense_Mutation p.R592S 0.45 deleterious_low_confidence(0.01) benign(0.402) TCGA-L5-A88V-01 7 100065217 100065217 G A TSC22D4 Silent p.S312S 0.47 TCGA-L5-A88V-01 7 100180051 100180051 G C LRCH4 Silent p.P84P 0.11 TCGA-L5-A88V-01 7 100491648 100491648 G A ACHE Missense_Mutation p.A69V 0.44 deleterious(0) possibly_damaging(0.903) TCGA-L5-A88V-01 7 1133432 1133432 C A GPER1 3'UTR 0.28 TCGA-L5-A88V-01 7 121659264 121659264 G A PTPRZ1 Missense_Mutation p.V1644M 0.41 deleterious(0) probably_damaging(0.981) TCGA-L5-A88V-01 7 131825389 131825389 C T PLXNA4 Missense_Mutation p.D1803N 0.42 deleterious(0) probably_damaging(1) TCGA-L5-A88V-01 7 141176961 141176961 C T TMEM178B 3'UTR 0.40 TCGA-L5-A88V-01 7 142104186 142104186 G A TRBV6-9 Silent p.F93F 0.17 TCGA-L5-A88V-01 7 150269569 150269569 C A GIMAP4 Silent p.I137I 0.22 TCGA-L5-A88V-01 7 157903567 157903567 C T PTPRN2 Missense_Mutation p.V533I 0.44 tolerated(0.16) benign(0.244) TCGA-L5-A88V-01 7 18674345 18674345 C T HDAC9 Missense_Mutation p.P298S 0.46 tolerated(0.07) benign(0.044) TCGA-L5-A88V-01 7 2515352 2515352 C T GRIFIN RNA 0.46 TCGA-L5-A88V-01 7 26779515 26779515 G A SKAP2 Missense_Mutation p.R126C 0.11 deleterious(0) probably_damaging(1) TCGA-L5-A88V-01 7 37896931 37896931 T A NME8 Missense_Mutation p.V85D 0.27 deleterious(0) probably_damaging(0.993) TCGA-L5-A88V-01 7 38370460 38370460 C T TRGV8 5'UTR 0.12 TCGA-L5-A88V-01 7 70231275 70231275 C T AUTS2 Silent p.H548H 0.18 TCGA-L5-A88V-01 7 75183808 75183808 C T HIP1 Missense_Mutation p.V661I 0.40 tolerated(0.13) benign(0.001) TCGA-L5-A88V-01 7 97821506 97821506 G A LMTK2 Missense_Mutation p.D577N 0.42 tolerated(0.11) benign(0.091) TCGA-L5-A88V-01 8 102699747 102699747 C G NCALD 3'UTR 0.38 TCGA-L5-A88V-01 8 10532174 10532174 C T C8orf74 Missense_Mutation p.R23C 0.73 tolerated(0.28) benign(0.004) TCGA-L5-A88V-01 8 105601095 105601095 G A LRP12 Missense_Mutation p.P11S 0.56 tolerated_low_confidence(0.35) benign(0.01) TCGA-L5-A88V-01 8 116424263 116424263 A - TRPS1 3'UTR 0.10 TCGA-L5-A88V-01 8 18541566 18541566 C T PSD3 Intron 0.73 TCGA-L5-A88V-01 8 21894261 21894261 C T NPM2 3'UTR 0.73 TCGA-L5-A88V-01 8 22054907 22054907 A G BMP1 Missense_Mutation p.K694R 0.05 tolerated(0.5) benign(0.011) TCGA-L5-A88V-01 8 22278580 22278580 G T SLC39A14 3'UTR 0.29 TCGA-L5-A88V-01 8 2857633 2857633 C G CSMD1 Missense_Mutation p.D2684H 0.70 probably_damaging(0.988) TCGA-L5-A88V-01 8 40438734 40438734 G T ZMAT4 Missense_Mutation p.N208K 0.80 deleterious(0.01) possibly_damaging(0.905) TCGA-L5-A88V-01 8 55542526 55542526 G A RP1 Silent p.L2028L 0.29 TCGA-L5-A88V-01 8 67546810 67546810 C T VCPIP1 Missense_Mutation p.V1199M 0.53 deleterious_low_confidence(0.05) possibly_damaging(0.469) TCGA-L5-A88V-01 8 75227448 75227448 C A JPH1 Missense_Mutation p.D263Y 0.10 deleterious(0.02) possibly_damaging(0.474) TCGA-L5-A88V-01 8 86050680 86050680 C T LRRCC1 Missense_Mutation p.A937V 0.09 deleterious(0.02) benign(0.075) TCGA-L5-A88V-01 8 88884479 88884479 A G DCAF4L2 3'UTR 0.50 TCGA-L5-A88V-01 9 114985122 114985122 T A PTBP3 3'UTR 0.41 TCGA-L5-A88V-01 9 117165033 117165033 T A DFNB31 3'UTR 0.20 TCGA-L5-A88V-01 9 131742885 131742885 G A NUP188 Missense_Mutation p.E424K 0.08 tolerated(0.4) benign(0.034) TCGA-L5-A88V-01 9 19516162 19516162 C T SLC24A2 Missense_Mutation p.V659I 0.25 tolerated(0.2) benign(0.034) TCGA-L5-A88V-01 9 72841289 72841289 C T MAMDC2 3'UTR 0.26 TCGA-L5-A88V-01 X 100882275 100882275 A T ARMCX3 3'UTR 0.61 TCGA-L5-A88V-01 X 118723469 118723469 G A NKRF Missense_Mutation p.A655V 0.89 deleterious(0.01) possibly_damaging(0.799) TCGA-L5-A88V-01 X 142967969 142967969 G T UBE2NL 3'UTR 0.38 TCGA-L5-A88V-01 X 24579631 24579631 T C PCYT1B 3'Flank 0.88 TCGA-L5-A88V-01 X 50165516 50165516 G T DGKK RNA 0.80 TCGA-L5-A88V-01 X 70837155 70837155 A C CXCR3 Missense_Mutation p.L103R 0.80 deleterious(0.01) possibly_damaging(0.767) TCGA-L5-A88V-01 X 72804366 72804366 A G CHIC1 Silent p.T155T 0.39 TCGA-L5-A88W-01 10 106907465 106907465 G A SORCS3 Missense_Mutation p.D465N 0.35 deleterious(0) benign(0.356) TCGA-L5-A88W-01 10 7780587 7780587 C - ITIH2 Frame_Shift_Del p.L655Cfs*23 0.31 TCGA-L5-A88W-01 10 81145972 81145972 C T ZCCHC24 3'UTR 0.47 TCGA-L5-A88W-01 10 81841630 81841630 C G TMEM254 Missense_Mutation p.Q41E 0.42 tolerated(0.33) benign(0.137) TCGA-L5-A88W-01 10 91528563 91528563 C A KIF20B Missense_Mutation p.N1680K 0.32 tolerated(0.91) benign(0.331) TCGA-L5-A88W-01 11 105929763 105929763 G C KBTBD3 Missense_Mutation p.P21R 0.29 deleterious_low_confidence(0) benign(0.063) TCGA-L5-A88W-01 11 118773129 118773129 C T BCL9L Silent p.G441G 0.38 TCGA-L5-A88W-01 11 11974404 11974404 G A USP47 Missense_Mutation p.E1166K 0.41 deleterious(0.02) probably_damaging(0.922) TCGA-L5-A88W-01 11 124189277 124189277 C G OR8D2 Missense_Mutation p.V273L 0.40 deleterious(0.02) benign(0.377) TCGA-L5-A88W-01 11 124958032 124958032 G C SLC37A2 3'UTR 0.28 TCGA-L5-A88W-01 11 27389347 27389347 G A LGR4 3'UTR 0.29 TCGA-L5-A88W-01 11 33763561 33763561 C G FBXO3 Missense_Mutation p.D437H 0.41 tolerated_low_confidence(0.54) unknown(0) TCGA-L5-A88W-01 11 36669570 36669570 G T C11orf74 Missense_Mutation p.L121F 0.28 tolerated(0.29) benign(0.072) TCGA-L5-A88W-01 11 47444219 47444219 C A PSMC3 Missense_Mutation p.G264C 0.41 deleterious(0) probably_damaging(1) TCGA-L5-A88W-01 11 55798042 55798042 A G OR5AS1 Missense_Mutation p.N50D 0.32 tolerated(0.18) benign(0.081) TCGA-L5-A88W-01 11 6459607 6459607 C T HPX Missense_Mutation p.E157K 0.33 deleterious(0.01) benign(0.404) TCGA-L5-A88W-01 11 64815123 64815123 G A NAALADL1 Missense_Mutation p.P502S 0.33 deleterious(0) possibly_damaging(0.612) TCGA-L5-A88W-01 11 65315164 65315164 C T LTBP3 Missense_Mutation p.V659M 0.41 tolerated(0.05) benign(0.085) TCGA-L5-A88W-01 11 76804733 76804733 C G CAPN5 Missense_Mutation p.I57M 0.40 deleterious(0.01) possibly_damaging(0.553) TCGA-L5-A88W-01 11 801462 801462 G C PIDD Missense_Mutation p.R489G 0.22 deleterious(0.01) possibly_damaging(0.842) TCGA-L5-A88W-01 11 92532140 92532140 T C FAT3 Silent p.Y1987Y 0.33 TCGA-L5-A88W-01 11 92532150 92532150 A G FAT3 Missense_Mutation p.I1991V 0.28 probably_damaging(0.999) TCGA-L5-A88W-01 12 101188629 101188629 A G ANO4 5'UTR 0.33 TCGA-L5-A88W-01 12 102591245 102591245 G T PARPBP 3'Flank 0.37 TCGA-L5-A88W-01 12 111078278 111078278 G A TCTN1 Missense_Mutation p.V312I 0.30 tolerated(0.28) benign(0.008) TCGA-L5-A88W-01 12 124144761 124144761 G T GTF2H3 Missense_Mutation p.K302N 0.36 deleterious(0) unknown(0) TCGA-L5-A88W-01 12 2939666 2939666 A G NRIP2 Intron 0.33 TCGA-L5-A88W-01 12 306029 306029 G A SLC6A12 Silent p.I365I 0.50 TCGA-L5-A88W-01 12 49420423 49420423 C A KMT2D Missense_Mutation p.C5109F 0.43 unknown(0) TCGA-L5-A88W-01 12 49441854 49441854 T G KMT2D Splice_Site p.X1378_splice 0.44 TCGA-L5-A88W-01 12 53646627 53646627 T C MFSD5 Missense_Mutation p.V110A 0.15 deleterious(0.03) possibly_damaging(0.6) TCGA-L5-A88W-01 12 53723184 53723184 G A SP7 Silent p.S14S 0.32 TCGA-L5-A88W-01 12 69970560 69970560 A G FRS2 3'UTR 0.33 TCGA-L5-A88W-01 12 72021557 72021558 - G ZFC3H1 Frame_Shift_Ins p.Y1369Vfs*8 0.20 TCGA-L5-A88W-01 12 72316853 72316862 GTCATGACTC - TBC1D15 Frame_Shift_Del p.V649Lfs*37 0.26 TCGA-L5-A88W-01 12 94702581 94702581 C T CCDC41 3'UTR 0.36 TCGA-L5-A88W-01 13 20012288 20012288 T A TPTE2 Missense_Mutation p.T327S 0.30 deleterious(0.04) possibly_damaging(0.882) TCGA-L5-A88W-01 13 23913886 23913886 T A SACS Missense_Mutation p.T1377S 0.27 benign(0.27) TCGA-L5-A88W-01 13 27255248 27255248 G T WASF3 Silent p.L258L 0.29 TCGA-L5-A88W-01 13 39261662 39261662 G A FREM2 Missense_Mutation p.A61T 0.26 tolerated_low_confidence(0.54) benign(0.012) TCGA-L5-A88W-01 13 49781580 49781580 C G FNDC3A 3'UTR 0.31 TCGA-L5-A88W-01 14 32625839 32625839 A T ARHGAP5 3'UTR 0.24 TCGA-L5-A88W-01 14 95569749 95569749 G A DICER1 Silent p.T1328T 0.25 TCGA-L5-A88W-01 15 42003256 42003256 T A MGA Missense_Mutation p.H931Q 0.38 tolerated(0.46) benign(0.002) TCGA-L5-A88W-01 15 43525478 43525478 C T TGM5 Missense_Mutation p.G692R 0.41 deleterious(0.01) probably_damaging(1) TCGA-L5-A88W-01 15 99671376 99671376 G A SYNM Missense_Mutation p.M936I 0.44 tolerated(1) benign(0.001) TCGA-L5-A88W-01 16 1568310 1568310 G A IFT140 Silent p.L1363L 0.31 TCGA-L5-A88W-01 16 28511194 28511194 C T IL27 Silent p.E170E 0.09 TCGA-L5-A88W-01 16 4730035 4730035 T G MGRN1 Missense_Mutation p.C356W 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.789) TCGA-L5-A88W-01 16 50335099 50335099 C T ADCY7 Missense_Mutation p.R448C 0.28 deleterious(0.01) probably_damaging(0.912) TCGA-L5-A88W-01 16 50818239 50818239 G T CYLD Splice_Site p.X609_splice 0.24 TCGA-L5-A88W-01 16 53634205 53634205 A C RPGRIP1L 3'Flank 0.34 TCGA-L5-A88W-01 16 57180262 57180262 C T CPNE2 Intron 0.07 TCGA-L5-A88W-01 16 67877021 67877021 C T THAP11 Silent p.I188I 0.45 TCGA-L5-A88W-01 16 784156 784156 C G NARFL Intron 0.40 TCGA-L5-A88W-01 16 81412137 81412137 C T GAN 3'UTR 0.36 TCGA-L5-A88W-01 16 81942086 81942086 G A PLCG2 Silent p.T541T 0.31 TCGA-L5-A88W-01 17 17106063 17106063 G A PLD6 3'UTR 0.08 TCGA-L5-A88W-01 17 2236267 2236267 C T TSR1 Silent p.E431E 0.32 TCGA-L5-A88W-01 17 26905265 26905265 C T SPAG5 Missense_Mutation p.E1134K 0.44 tolerated(0.22) benign(0.117) TCGA-L5-A88W-01 17 29326185 29326185 G A RNF135 Silent p.L425L 0.42 TCGA-L5-A88W-01 17 32612701 32612701 C T CCL11 5'UTR 0.34 TCGA-L5-A88W-01 17 36483702 36483702 C G GPR179 Missense_Mutation p.R1917T 0.26 tolerated(0.58) benign(0.01) TCGA-L5-A88W-01 17 44248467 44248467 C T KANSL1 Missense_Mutation p.R348Q 0.46 deleterious(0.03) probably_damaging(0.995) TCGA-L5-A88W-01 17 47699360 47699360 C T SPOP Missense_Mutation p.E50K 0.26 tolerated(0.06) possibly_damaging(0.883) TCGA-L5-A88W-01 17 61497497 61497497 C T TANC2 Missense_Mutation p.P1385L 0.32 tolerated(0.66) benign(0.011) TCGA-L5-A88W-01 17 67160217 67160217 T C ABCA10 Missense_Mutation p.I1121V 0.24 tolerated(0.07) benign(0.158) TCGA-L5-A88W-01 17 8222159 8222159 C T ARHGEF15 Missense_Mutation p.S655L 0.25 tolerated(0.2) benign(0.077) TCGA-L5-A88W-01 17 8633412 8633412 C A CCDC42 3'UTR 0.38 TCGA-L5-A88W-01 17 9497542 9497542 C G WDR16 Missense_Mutation p.A147G 0.44 deleterious(0.02) possibly_damaging(0.589) TCGA-L5-A88W-01 18 18608786 18608786 C T ROCK1 Missense_Mutation p.V388I 0.05 tolerated(0.11) benign(0.23) TCGA-L5-A88W-01 18 334825 334825 C G COLEC12 Missense_Mutation p.G578A 0.36 tolerated(0.08) unknown(0) TCGA-L5-A88W-01 18 67531489 67531489 A G CD226 3'UTR 0.34 TCGA-L5-A88W-01 18 74153320 74153320 G A ZNF516 Missense_Mutation p.S564L 0.45 deleterious(0) benign(0.171) TCGA-L5-A88W-01 19 11132513 11132513 C T SMARCA4 Missense_Mutation p.T910M 0.37 probably_damaging(0.99) TCGA-L5-A88W-01 19 14846768 14846768 A G EMR2 3'UTR 0.50 TCGA-L5-A88W-01 19 16186866 16186866 G C TPM4 Missense_Mutation p.E42Q 0.27 tolerated(0.05) possibly_damaging(0.484) TCGA-L5-A88W-01 19 16186908 16186908 G A TPM4 Missense_Mutation p.E56K 0.33 deleterious(0.02) benign(0.004) TCGA-L5-A88W-01 19 17740954 17740954 C A UNC13A Missense_Mutation p.K1223N 0.35 deleterious(0) probably_damaging(0.982) TCGA-L5-A88W-01 19 21203604 21203604 G A ZNF430 5'UTR 0.33 TCGA-L5-A88W-01 19 2243467 2243469 CCT - SF3A2 In_Frame_Del p.S20del 0.32 TCGA-L5-A88W-01 19 22847630 22847630 C T ZNF492 Missense_Mutation p.H387Y 0.22 deleterious(0.01) possibly_damaging(0.514) TCGA-L5-A88W-01 19 2716404 2716404 G T DIRAS1 3'UTR 0.25 TCGA-L5-A88W-01 19 36253035 36253035 C G C19orf55 Missense_Mutation p.Q143E 0.49 tolerated(0.13) benign(0.039) TCGA-L5-A88W-01 19 36279303 36279303 C T ARHGAP33 Missense_Mutation p.S1118F 0.42 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-L5-A88W-01 19 36279603 36279603 C G ARHGAP33 3'UTR 0.33 TCGA-L5-A88W-01 19 39870719 39870719 G A SAMD4B Silent p.Q548Q 0.39 TCGA-L5-A88W-01 19 40539193 40539193 C G ZNF780B 3'UTR 0.27 TCGA-L5-A88W-01 19 43411757 43411757 C T PSG6 Missense_Mutation p.R319H 0.31 tolerated(0.38) benign(0.009) TCGA-L5-A88W-01 19 46195207 46195207 G A SNRPD2 5'UTR 0.23 TCGA-L5-A88W-01 19 51857574 51857574 G A ETFB Missense_Mutation p.P107S 0.26 deleterious_low_confidence(0) benign(0.07) TCGA-L5-A88W-01 19 52825738 52825738 C G ZNF480 Nonsense_Mutation p.S412* 0.31 TCGA-L5-A88W-01 19 53913101 53913102 - T ZNF765 3'UTR 0.20 TCGA-L5-A88W-01 19 53945524 53945524 A G TPM3P9 RNA 0.35 TCGA-L5-A88W-01 19 55668465 55668465 G A TNNI3 Missense_Mutation p.R21C 0.35 deleterious(0) unknown(0) TCGA-L5-A88W-01 19 56162854 56162854 G T CCDC106 Missense_Mutation p.R173S 0.29 deleterious(0) probably_damaging(0.997) TCGA-L5-A88W-01 19 5622770 5622770 G A SAFB2 5'UTR 0.33 TCGA-L5-A88W-01 19 56369442 56369442 T G NLRP4 Missense_Mutation p.F228C 0.33 deleterious(0) probably_damaging(1) TCGA-L5-A88W-01 1 101705189 101705189 A G S1PR1 Missense_Mutation p.I217V 0.29 deleterious(0) probably_damaging(0.98) TCGA-L5-A88W-01 1 103467522 103467522 G A COL11A1 Missense_Mutation p.L701F 0.28 unknown(0) TCGA-L5-A88W-01 1 104297202 104297202 T C AMY1C Silent p.H320H 0.16 TCGA-L5-A88W-01 1 108023343 108023343 C T NTNG1 Missense_Mutation p.R501W 0.09 deleterious(0.01) probably_damaging(0.918) TCGA-L5-A88W-01 1 11187803 11187803 C T MTOR Missense_Mutation p.E2032K 0.43 deleterious(0) probably_damaging(0.994) TCGA-L5-A88W-01 1 117568494 117568494 C T CD101 Missense_Mutation p.S931L 0.27 deleterious(0) possibly_damaging(0.814) TCGA-L5-A88W-01 1 12954550 12954550 G A PRAMEF10 Missense_Mutation p.R245C 0.37 tolerated(0.08) benign(0.001) TCGA-L5-A88W-01 1 144859760 144859760 T G PDE4DIP Missense_Mutation p.Q2108H 0.11 tolerated(0.17) possibly_damaging(0.834) TCGA-L5-A88W-01 1 151219428 151219428 C T PIP5K1A Missense_Mutation p.S558L 0.42 deleterious_low_confidence(0) benign(0.149) TCGA-L5-A88W-01 1 151338111 151338111 G A SELENBP1 Silent p.F324F 0.31 TCGA-L5-A88W-01 1 15788089 15788089 T C CELA2A Missense_Mutation p.Y55H 0.38 tolerated(0.38) benign(0.068) TCGA-L5-A88W-01 1 16459852 16459852 C A EPHA2 Nonsense_Mutation p.E626* 0.30 TCGA-L5-A88W-01 1 168283399 168283399 G T TBX19 3'UTR 0.23 TCGA-L5-A88W-01 1 174652677 174652677 T G RABGAP1L Missense_Mutation p.D614E 0.31 deleterious(0) probably_damaging(0.993) TCGA-L5-A88W-01 1 179887823 179887823 G A TOR1AIP1 3'UTR 0.43 TCGA-L5-A88W-01 1 206776495 206776495 G C EIF2D Silent p.L198L 0.31 TCGA-L5-A88W-01 1 2113342 2113342 C T PRKCZ Intron 0.33 TCGA-L5-A88W-01 1 22148718 22148718 C G LDLRAD2 3'UTR 0.31 TCGA-L5-A88W-01 1 225684578 225684578 G A ENAH 3'UTR 0.40 TCGA-L5-A88W-01 1 23412009 23412009 C A LUZP1 3'UTR 0.32 TCGA-L5-A88W-01 1 36379442 36379442 G A AGO1 Splice_Site p.X528_splice 0.28 TCGA-L5-A88W-01 1 5925321 5925321 C A NPHP4 Silent p.L1219L 0.34 TCGA-L5-A88W-01 1 67724812 67724812 A G IL23R 3'UTR 0.51 TCGA-L5-A88W-01 1 99774777 99774777 T A LPPR4 3'UTR 0.32 TCGA-L5-A88W-01 20 34192495 34192495 C A FER1L4 RNA 0.29 TCGA-L5-A88W-01 20 48471998 48471998 C A SLC9A8 Missense_Mutation p.S214Y 0.34 deleterious(0) probably_damaging(0.999) TCGA-L5-A88W-01 20 57484420 57484420 C T GNAS Missense_Mutation p.R844C 0.27 deleterious(0.01) probably_damaging(1) TCGA-L5-A88W-01 20 58441562 58441562 C T SYCP2 Missense_Mutation p.S1403N 0.39 deleterious(0) benign(0.093) TCGA-L5-A88W-01 20 60886979 60886979 G A LAMA5 Missense_Mutation p.T3211M 0.37 benign(0.091) TCGA-L5-A88W-01 20 62844938 62844938 G A MYT1 Silent p.E523E 0.24 TCGA-L5-A88W-01 20 8707959 8707959 G C PLCB1 Missense_Mutation p.R561T 0.52 tolerated(0.06) possibly_damaging(0.573) TCGA-L5-A88W-01 21 34951684 34951718 CAGATGTTAAATACAGCAGTTGGCTCGTGTGGATA - DONSON Frame_Shift_Del p.Y501Pfs*8 0.21 TCGA-L5-A88W-01 21 38865336 38865336 G C DYRK1A Missense_Mutation p.Q323H 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A88W-01 21 41424027 41424027 G T DSCAM Silent p.R1681R 0.30 TCGA-L5-A88W-01 22 22273962 22273962 C T PPM1F 3'UTR 0.53 TCGA-L5-A88W-01 22 38478026 38478026 G T SLC16A8 Missense_Mutation p.S76R 0.38 deleterious(0) probably_damaging(0.998) TCGA-L5-A88W-01 22 39710147 39710147 C T RPL3 Missense_Mutation p.D306N 0.36 tolerated(0.13) benign(0.136) TCGA-L5-A88W-01 22 50882849 50882849 G A PPP6R2 3'Flank 0.27 TCGA-L5-A88W-01 2 131331896 131331896 C A AC140481.2 5'UTR 0.19 TCGA-L5-A88W-01 2 152436107 152436107 G A NEB Silent p.S5483S 0.18 TCGA-L5-A88W-01 2 170063036 170063036 C G LRP2 Missense_Mutation p.L2398F 0.39 possibly_damaging(0.846) TCGA-L5-A88W-01 2 200136399 200136400 - T SATB2 3'UTR 0.29 TCGA-L5-A88W-01 2 204058577 204058577 C T NBEAL1 Silent p.D2298D 0.37 TCGA-L5-A88W-01 2 23914666 23914666 C T KLHL29 Missense_Mutation p.S401L 0.37 deleterious(0.03) possibly_damaging(0.562) TCGA-L5-A88W-01 2 26101071 26101078 CCTACGTC - ASXL2 Frame_Shift_Del p.G5Efs*25 0.28 TCGA-L5-A88W-01 2 3502816 3502816 G A ADI1 Missense_Mutation p.P153L 0.36 deleterious(0.03) benign(0.405) TCGA-L5-A88W-01 2 48034444 48034444 A G FBXO11 3'UTR 0.32 TCGA-L5-A88W-01 2 48808503 48808503 C G STON1-GTF2A1L Nonsense_Mutation p.S244* 0.40 TCGA-L5-A88W-01 2 74329136 74329136 G A TET3 Missense_Mutation p.G1606R 0.42 deleterious(0) probably_damaging(0.962) TCGA-L5-A88W-01 2 8998163 8998163 C A MBOAT2 3'UTR 0.28 TCGA-L5-A88W-01 2 90122042 90122042 G A IGKV1D-17 Missense_Mutation p.S87N 0.33 deleterious(0) benign(0.331) TCGA-L5-A88W-01 3 121616250 121616250 A G SLC15A2 Missense_Mutation p.Y70C 0.40 deleterious(0) possibly_damaging(0.627) TCGA-L5-A88W-01 3 128629068 128629068 G A RP11-723O4.6 3'UTR 0.27 TCGA-L5-A88W-01 3 128888569 128888569 C T CNBP 3'Flank 0.26 TCGA-L5-A88W-01 3 132432010 132432010 T - NPHP3 Frame_Shift_Del p.S360Vfs*3 0.29 TCGA-L5-A88W-01 3 135866318 135866318 T C PPP2R3A 3'UTR 0.40 TCGA-L5-A88W-01 3 138224144 138224144 G A CEP70 Missense_Mutation p.S405F 0.32 tolerated(0.18) benign(0.176) TCGA-L5-A88W-01 3 141820587 141820587 G A TFDP2 Missense_Mutation p.T2M 0.27 tolerated_low_confidence(0.63) benign(0.004) TCGA-L5-A88W-01 3 159976308 159976308 G A IFT80 3'UTR 0.31 TCGA-L5-A88W-01 3 178952085 178952085 A T PIK3CA Missense_Mutation p.H1047L 0.23 tolerated(0.44) benign(0.085) TCGA-L5-A88W-01 3 185765065 185765065 T A ETV5 3'UTR 0.37 TCGA-L5-A88W-01 3 186572507 186572507 A T ADIPOQ 3'UTR 0.28 TCGA-L5-A88W-01 3 195511581 195511581 A G MUC4 Silent p.P2290P 0.21 TCGA-L5-A88W-01 3 196434354 196434354 T C CEP19 3'UTR 0.27 TCGA-L5-A88W-01 3 28365409 28365409 A G CMC1 3'UTR 0.45 TCGA-L5-A88W-01 3 30715618 30715618 G A TGFBR2 Missense_Mutation p.A451T 0.34 deleterious(0) probably_damaging(0.999) TCGA-L5-A88W-01 3 44637008 44637009 - A ZNF660 3'UTR 0.33 TCGA-L5-A88W-01 3 44819651 44819651 C T KIF15 Silent p.C97C 0.28 TCGA-L5-A88W-01 3 49457771 49457771 G A AMT Missense_Mutation p.T115I 0.39 deleterious(0.02) benign(0.162) TCGA-L5-A88W-01 4 147824756 147824756 C T TTC29 Missense_Mutation p.D176N 0.24 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A88W-01 4 151604720 151604720 C T LRBA Nonsense_Mutation p.W1968* 0.32 TCGA-L5-A88W-01 4 152601009 152601009 C A PET112 Missense_Mutation p.D456Y 0.38 deleterious(0) possibly_damaging(0.797) TCGA-L5-A88W-01 4 156727730 156727730 T G GUCY1B3 3'UTR 0.27 TCGA-L5-A88W-01 4 169197311 169197311 C A DDX60 Missense_Mutation p.S667I 0.31 deleterious(0) possibly_damaging(0.866) TCGA-L5-A88W-01 4 183960276 183960276 C T FAM92A1P2 RNA 0.30 TCGA-L5-A88W-01 4 1980408 1980409 - C WHSC1 Frame_Shift_Ins p.S1292Ffs*14 0.22 TCGA-L5-A88W-01 4 3208383 3208383 G A HTT Missense_Mutation p.R1960H 0.40 probably_damaging(0.999) TCGA-L5-A88W-01 4 3769693 3769693 C T ADRA2C Nonsense_Mutation p.R454* 0.24 TCGA-L5-A88W-01 4 71655520 71655520 T A RUFY3 Intron 0.30 TCGA-L5-A88W-01 4 8448312 8448312 A G TRMT44 Silent p.E243E 0.37 TCGA-L5-A88W-01 5 139003036 139003036 G C UBE2D2 Missense_Mutation p.D130H 0.43 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-L5-A88W-01 5 140187662 140187662 C T PCDHA4 Missense_Mutation p.P297L 0.22 tolerated_low_confidence(0.09) benign(0.033) TCGA-L5-A88W-01 5 140306328 140306328 G A PCDHAC1 5'Flank 0.44 TCGA-L5-A88W-01 5 140699108 140699108 T C TAF7 Silent p.R168R 0.31 TCGA-L5-A88W-01 5 150694888 150694888 G T SLC36A2 3'UTR 0.33 TCGA-L5-A88W-01 5 156649947 156649947 C T ITK Silent p.L190L 0.32 TCGA-L5-A88W-01 5 167826550 167826550 C A WWC1 Missense_Mutation p.R190S 0.08 deleterious(0.01) benign(0.106) TCGA-L5-A88W-01 5 172661786 172661786 C T NKX2-5 Missense_Mutation p.D101N 0.27 tolerated(0.08) probably_damaging(0.959) TCGA-L5-A88W-01 5 176761300 176761300 G A LMAN2 Missense_Mutation p.L299F 0.41 tolerated(1) benign(0.004) TCGA-L5-A88W-01 5 178506868 178506868 C T ZNF354C Nonsense_Mutation p.Q479* 0.19 TCGA-L5-A88W-01 5 180002753 180002753 G A CNOT6 3'UTR 0.32 TCGA-L5-A88W-01 5 5463973 5463973 G A KIAA0947 Missense_Mutation p.R1509H 0.29 deleterious(0.03) benign(0.287) TCGA-L5-A88W-01 5 60455314 60455314 A G SMIM15 3'UTR 0.38 TCGA-L5-A88W-01 5 60768825 60768825 G A ZSWIM6 Missense_Mutation p.E332K 0.37 deleterious(0.01) probably_damaging(0.939) TCGA-L5-A88W-01 6 158924056 158924056 C G TULP4 Missense_Mutation p.P1121A 0.41 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-L5-A88W-01 6 160328513 160328513 G A MAS1 Missense_Mutation p.E176K 0.29 tolerated(0.39) benign(0.003) TCGA-L5-A88W-01 6 160679860 160679860 C A SLC22A2 5'UTR 0.38 TCGA-L5-A88W-01 6 28104687 28104687 T C RP1-265C24.8 RNA 0.28 TCGA-L5-A88W-01 6 29910684 29910685 - GATA HLA-A Frame_Shift_Ins p.E77Dfs*23 0.11 TCGA-L5-A88W-01 6 31747232 31747232 C T VARS Missense_Mutation p.D1124N 0.34 tolerated(0.07) probably_damaging(0.977) TCGA-L5-A88W-01 6 39853770 39853770 G T DAAM2 Intron 0.19 TCGA-L5-A88W-01 6 88853531 88853531 A - CNR1 3'UTR 0.50 TCGA-L5-A88W-01 7 100730776 100730776 G A TRIM56 Silent p.E61E 0.22 TCGA-L5-A88W-01 7 100730795 100730795 G C TRIM56 Missense_Mutation p.E68Q 0.25 tolerated_low_confidence(0.33) benign(0.01) TCGA-L5-A88W-01 7 100731162 100731162 G C TRIM56 Missense_Mutation p.R190T 0.18 deleterious(0) possibly_damaging(0.688) TCGA-L5-A88W-01 7 100958483 100958483 A G RABL5 Missense_Mutation p.Y164H 0.25 deleterious(0) probably_damaging(0.993) TCGA-L5-A88W-01 7 116139910 116139910 C G CAV2 Silent p.L25L 0.34 TCGA-L5-A88W-01 7 128454861 128454861 C G CCDC136 Missense_Mutation p.A978G 0.22 tolerated(0.06) benign(0.138) TCGA-L5-A88W-01 7 128486431 128486431 C T FLNC Silent p.G1347G 0.25 TCGA-L5-A88W-01 7 139416253 139416253 G C HIPK2 Missense_Mutation p.S194C 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A88W-01 7 150389763 150389763 A C GIMAP2 Missense_Mutation p.K130T 0.28 deleterious(0.03) possibly_damaging(0.793) TCGA-L5-A88W-01 7 29440273 29440273 C T CHN2 Silent p.Y135Y 0.21 TCGA-L5-A88W-01 7 6426904 6426904 A T RAC1 Missense_Mutation p.I33F 0.22 deleterious(0) probably_damaging(0.941) TCGA-L5-A88W-01 7 72987738 72987738 C T TBL2 Silent p.E170E 0.21 TCGA-L5-A88W-01 8 114389036 114389036 G C CSMD3 Intron 0.26 TCGA-L5-A88W-01 8 124335278 124335279 - T ATAD2 Frame_Shift_Ins p.S1344Kfs*28 0.32 TCGA-L5-A88W-01 8 132991105 132991105 A T EFR3A Silent p.G446G 0.31 TCGA-L5-A88W-01 8 146015317 146015317 G A RPL8 Missense_Mutation p.H216Y 0.31 deleterious(0) probably_damaging(0.965) TCGA-L5-A88W-01 8 22035217 22035217 C A BMP1 Intron 0.25 TCGA-L5-A88W-01 8 24298629 24298629 C A ADAM7 Missense_Mutation p.P3H 0.31 deleterious(0.01) possibly_damaging(0.832) TCGA-L5-A88W-01 8 24365023 24365023 G A ADAM7 Missense_Mutation p.A747T 0.29 tolerated_low_confidence(0.17) benign(0.016) TCGA-L5-A88W-01 8 27156030 27156030 G A TRIM35 Missense_Mutation p.A161V 0.28 tolerated(0.24) benign(0.021) TCGA-L5-A88W-01 8 28980968 28980968 C G KIF13B Missense_Mutation p.E1132Q 0.29 tolerated(0.05) probably_damaging(0.94) TCGA-L5-A88W-01 8 38270040 38270040 A C FGFR1 3'UTR 0.38 TCGA-L5-A88W-01 8 52384761 52384761 A C PXDNL Missense_Mutation p.I266M 0.34 deleterious(0.01) probably_damaging(0.976) TCGA-L5-A88W-01 8 61750713 61750713 G A CHD7 Missense_Mutation p.E1478K 0.30 probably_damaging(0.986) TCGA-L5-A88W-01 8 72935276 72935276 G A TRPA1 Silent p.I1075I 0.33 TCGA-L5-A88W-01 9 108536579 108536579 A T TMEM38B 3'UTR 0.49 TCGA-L5-A88W-01 9 136913402 136913402 C T BRD3 Missense_Mutation p.E297K 0.40 deleterious(0.02) possibly_damaging(0.905) TCGA-L5-A88W-01 9 36170954 36170954 G A CCIN Silent p.R485R 0.09 TCGA-L5-A88W-01 X 105183880 105183880 C G NRK Missense_Mutation p.L1273V 0.52 tolerated(0.07) probably_damaging(0.99) TCGA-L5-A88W-01 X 139100021 139100021 G T RP11-364B14.1 RNA 0.40 TCGA-L5-A88W-01 X 21896680 21896681 - A MBTPS2 Frame_Shift_Ins p.S380Kfs*28 0.59 TCGA-L5-A88W-01 X 53964450 53964450 G A PHF8 3'UTR 0.77 TCGA-L5-A88Y-01 10 102824080 102824115 GGCTGTGAAGTGTTTGCCTACCCCATGGCCTCCATC - KAZALD1 In_Frame_Del p.G192_I203del 0.21 TCGA-L5-A88Y-01 10 107012540 107012540 G C SORCS3 Missense_Mutation p.S1038T 0.14 tolerated(0.14) benign(0.032) TCGA-L5-A88Y-01 10 10988500 10988500 T C LINC00710 RNA 0.41 TCGA-L5-A88Y-01 10 1132272 1132272 C G WDR37 Silent p.V193V 0.24 TCGA-L5-A88Y-01 10 13647736 13647736 G A PRPF18 Missense_Mutation p.V119I 0.19 tolerated(0.32) benign(0.006) TCGA-L5-A88Y-01 10 17026145 17026145 T G CUBN Missense_Mutation p.N1495T 0.09 tolerated(0.28) benign(0.226) TCGA-L5-A88Y-01 10 20105533 20105533 C A PLXDC2 5'UTR 0.46 TCGA-L5-A88Y-01 10 29773693 29773693 C T SVIL Missense_Mutation p.R1616Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 10 50530976 50530976 C A C10orf71 Missense_Mutation p.P129Q 0.39 tolerated(0.06) probably_damaging(0.996) TCGA-L5-A88Y-01 10 55587231 55587231 G T PCDH15 Missense_Mutation p.A1430E 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-L5-A88Y-01 10 7327845 7327845 C T SFMBT2 Missense_Mutation p.A170T 0.14 tolerated(0.11) probably_damaging(0.998) TCGA-L5-A88Y-01 10 75185617 75185617 C T MSS51 Missense_Mutation p.E341K 0.48 deleterious(0) possibly_damaging(0.498) TCGA-L5-A88Y-01 10 94113332 94113332 A C MARCH5 3'UTR 0.28 TCGA-L5-A88Y-01 11 100863773 100863773 C A TMEM133 3'UTR 0.31 TCGA-L5-A88Y-01 11 114453437 114453437 C T NXPE4 Missense_Mutation p.G135R 0.38 deleterious(0.04) probably_damaging(1) TCGA-L5-A88Y-01 11 114574718 114574718 A C NXPE2 Missense_Mutation p.N291T 0.32 deleterious(0.01) possibly_damaging(0.703) TCGA-L5-A88Y-01 11 114574744 114574744 T G NXPE2 Missense_Mutation p.F300V 0.30 deleterious(0.04) possibly_damaging(0.477) TCGA-L5-A88Y-01 11 119369425 119369425 G A USP2-AS1 RNA 0.13 TCGA-L5-A88Y-01 11 120776185 120776185 G A GRIK4 Missense_Mutation p.G487R 0.36 tolerated(0.68) probably_damaging(1) TCGA-L5-A88Y-01 11 122944387 122944387 G T CLMP Missense_Mutation p.S306Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 11 124294116 124294116 C T OR8B4 Missense_Mutation p.A218T 0.32 tolerated_low_confidence(0.41) benign(0.03) TCGA-L5-A88Y-01 11 34988203 34988203 G A PDHX Missense_Mutation p.V220I 0.21 tolerated(0.64) benign(0.005) TCGA-L5-A88Y-01 11 3819107 3819107 G A NUP98 5'Flank 0.11 TCGA-L5-A88Y-01 11 46880335 46880335 G A LRP4 3'UTR 0.10 TCGA-L5-A88Y-01 11 4790662 4790662 A C OR51F1 Silent p.L162L 0.09 TCGA-L5-A88Y-01 11 49168365 49168365 A C FOLH1 Missense_Mutation p.I732M 0.25 tolerated(0.14) probably_damaging(0.989) TCGA-L5-A88Y-01 11 49168437 49168437 A C FOLH1 Missense_Mutation p.I708M 0.31 deleterious(0) probably_damaging(0.996) TCGA-L5-A88Y-01 11 4936177 4936177 T A OR51G2 Missense_Mutation p.R239S 0.12 tolerated(0.2) possibly_damaging(0.794) TCGA-L5-A88Y-01 11 4936178 4936178 C A OR51G2 Missense_Mutation p.R239I 0.11 tolerated(0.07) probably_damaging(0.962) TCGA-L5-A88Y-01 11 49831413 49831413 A C RP11-707M1.1 RNA 0.28 TCGA-L5-A88Y-01 11 5530411 5530411 T C UBQLN3 Silent p.A126A 0.27 TCGA-L5-A88Y-01 11 55371506 55371506 A G OR4C11 Missense_Mutation p.L115P 0.11 deleterious(0) possibly_damaging(0.841) TCGA-L5-A88Y-01 11 57576008 57576010 AAT GA CTNND1 Frame_Shift_Del p.I747Mfs*10 0.31 TCGA-L5-A88Y-01 11 58034724 58034724 A C OR10W1 Missense_Mutation p.F203V 0.41 tolerated(0.21) benign(0.047) TCGA-L5-A88Y-01 11 59620488 59620488 C T TCN1 Missense_Mutation p.R421H 0.22 tolerated(1) benign(0) TCGA-L5-A88Y-01 11 6191067 6191067 A C OR52B2 Missense_Mutation p.L164V 0.20 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 11 63765778 63765778 T C OTUB1 3'UTR 0.16 TCGA-L5-A88Y-01 11 67024653 67024653 G A KDM2A 3'UTR 0.20 TCGA-L5-A88Y-01 11 6942559 6942559 T G OR2D3 Silent p.S109S 0.11 TCGA-L5-A88Y-01 11 6953763 6953763 T G ZNF215 Missense_Mutation p.I87S 0.12 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 11 8643293 8643293 C T TRIM66 Missense_Mutation p.E905K 0.22 deleterious(0) probably_damaging(0.993) TCGA-L5-A88Y-01 11 89531678 89531678 T G TRIM49 Missense_Mutation p.S327R 0.15 tolerated(0.18) benign(0.025) TCGA-L5-A88Y-01 12 10282699 10282699 G A CLEC7A 5'UTR 0.15 TCGA-L5-A88Y-01 12 109654631 109654631 G T ACACB Missense_Mutation p.R1157M 0.08 deleterious(0) probably_damaging(0.934) TCGA-L5-A88Y-01 12 109863840 109863840 C T MYO1H Silent p.N589N 0.26 TCGA-L5-A88Y-01 12 119937887 119937887 C T CCDC60 Missense_Mutation p.P188S 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A88Y-01 12 122268047 122268047 G A SETD1B Missense_Mutation p.V1892I 0.28 unknown(0) TCGA-L5-A88Y-01 12 129559126 129559126 T C TMEM132D Missense_Mutation p.K865R 0.24 tolerated(0.51) benign(0.007) TCGA-L5-A88Y-01 12 129822241 129822241 A G TMEM132D Silent p.L413L 0.34 TCGA-L5-A88Y-01 12 18237536 18237536 A G RERGL Missense_Mutation p.Y84H 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A88Y-01 12 1995144 1995144 C T CACNA2D4 Missense_Mutation p.R352Q 0.28 tolerated(0.25) benign(0.094) TCGA-L5-A88Y-01 12 20799816 20799816 G C PDE3A Missense_Mutation p.A833P 0.15 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 12 21069147 21069147 A C SLCO1B3 Missense_Mutation p.N692T 0.13 tolerated_low_confidence(0.63) benign(0) TCGA-L5-A88Y-01 12 23893917 23893917 G T SOX5 Missense_Mutation p.L209M 0.30 deleterious(0) probably_damaging(0.998) TCGA-L5-A88Y-01 12 23908598 23908598 C T SOX5 Missense_Mutation p.G181E 0.15 tolerated(0.06) probably_damaging(0.976) TCGA-L5-A88Y-01 12 27826753 27826753 C G PPFIBP1 Missense_Mutation p.S475C 0.24 deleterious(0.05) possibly_damaging(0.572) TCGA-L5-A88Y-01 12 40753183 40753183 A G LRRK2 Missense_Mutation p.K2322R 0.30 tolerated(0.21) benign(0.219) TCGA-L5-A88Y-01 12 44165128 44165128 C G IRAK4 Missense_Mutation p.I89M 0.13 tolerated(0.12) benign(0.027) TCGA-L5-A88Y-01 12 54383687 54383687 A T HOXC10 3'UTR 0.08 TCGA-L5-A88Y-01 12 6061647 6061647 G A VWF Silent p.F2675F 0.43 TCGA-L5-A88Y-01 12 6127634 6127634 G A VWF Silent p.L1650L 0.14 TCGA-L5-A88Y-01 12 67706402 67706402 T G CAND1 Missense_Mutation p.V1162G 0.30 deleterious(0) probably_damaging(0.995) TCGA-L5-A88Y-01 12 69969415 69969415 C T FRS2 3'UTR 0.15 TCGA-L5-A88Y-01 12 75434973 75434973 A T KCNC2 3'UTR 0.10 TCGA-L5-A88Y-01 13 23911132 23911132 T G SACS Missense_Mutation p.N2295H 0.66 benign(0.007) TCGA-L5-A88Y-01 13 28608524 28608524 C T FLT3 Missense_Mutation p.D540N 0.05 tolerated(0.05) benign(0.156) TCGA-L5-A88Y-01 13 38153488 38153488 T G POSTN Missense_Mutation p.N557H 0.60 deleterious(0.02) probably_damaging(0.992) TCGA-L5-A88Y-01 13 41133076 41133076 A T FOXO1 3'UTR 0.48 TCGA-L5-A88Y-01 13 45976491 45976491 C T SLC25A30 Silent p.A136A 0.06 TCGA-L5-A88Y-01 13 50066209 50066209 G A SETDB2 3'UTR 0.07 TCGA-L5-A88Y-01 13 60582752 60582752 C G DIAPH3 Missense_Mutation p.A314P 0.11 tolerated(0.12) possibly_damaging(0.833) TCGA-L5-A88Y-01 13 84451919 84451919 T C SLITRK1 3'UTR 0.21 TCGA-L5-A88Y-01 14 101507723 101507723 T G MIR300 RNA 0.10 TCGA-L5-A88Y-01 14 106691881 106691881 A G IGHV3-21 Missense_Mutation p.F48S 0.26 deleterious_low_confidence(0.01) benign(0.343) TCGA-L5-A88Y-01 14 19563717 19563717 A C POTEG Intron 0.45 TCGA-L5-A88Y-01 14 26915813 26915813 G T NOVA1 3'UTR 0.16 TCGA-L5-A88Y-01 14 50089217 50089220 CTAA - MGAT2 Frame_Shift_Del p.T412Sfs*8 0.15 TCGA-L5-A88Y-01 14 64920550 64920550 C T MTHFD1 Nonsense_Mutation p.Q846* 0.17 TCGA-L5-A88Y-01 14 71443851 71443851 T C PCNX Missense_Mutation p.L266P 0.34 tolerated_low_confidence(0.06) possibly_damaging(0.904) TCGA-L5-A88Y-01 14 86091771 86091771 T G FLRT2 3'UTR 0.24 TCGA-L5-A88Y-01 14 94185282 94185282 A C PRIMA1 3'UTR 0.19 TCGA-L5-A88Y-01 15 23686784 23686784 C T GOLGA6L2 Missense_Mutation p.E280K 0.11 benign(0.01) TCGA-L5-A88Y-01 15 25327992 25327992 G A SNORD116-16 RNA 0.09 TCGA-L5-A88Y-01 15 27778117 27778117 A C GABRG3 3'UTR 0.14 TCGA-L5-A88Y-01 15 48434528 48434528 A C SLC24A5 Missense_Mutation p.I495L 0.17 tolerated(0.37) benign(0.001) TCGA-L5-A88Y-01 15 77344751 77344751 G A TSPAN3 Silent p.A215A 0.13 TCGA-L5-A88Y-01 15 84287378 84287378 A C SH3GL3 3'UTR 0.18 TCGA-L5-A88Y-01 15 84708241 84708241 C G ADAMTSL3 3'UTR 0.29 TCGA-L5-A88Y-01 15 99502015 99502015 G A IGF1R 3'UTR 0.31 TCGA-L5-A88Y-01 16 10862895 10862895 G C TVP23A 3'UTR 0.29 TCGA-L5-A88Y-01 16 28509090 28509090 G A APOBR Missense_Mutation p.E910K 0.09 tolerated(0.09) benign(0) TCGA-L5-A88Y-01 16 30020531 30020531 C T DOC2A Missense_Mutation p.A137T 0.39 deleterious(0.01) possibly_damaging(0.772) TCGA-L5-A88Y-01 16 31765569 31765569 G A ZNF720 Intron 0.09 TCGA-L5-A88Y-01 16 48174698 48174698 A G ABCC12 Missense_Mutation p.I186T 0.22 deleterious(0) possibly_damaging(0.516) TCGA-L5-A88Y-01 16 50816358 50816358 T G CYLD Missense_Mutation p.L603V 0.22 deleterious(0) possibly_damaging(0.866) TCGA-L5-A88Y-01 16 51170581 51170581 T G SALL1 3'UTR 0.36 TCGA-L5-A88Y-01 17 29653249 29653249 A T NF1 Missense_Mutation p.K1749N 0.24 deleterious(0.01) benign(0.129) TCGA-L5-A88Y-01 17 70118950 70118950 C A SOX9 Nonsense_Mutation p.Y174* 0.16 TCGA-L5-A88Y-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.50 deleterious(0) probably_damaging(0.997) TCGA-L5-A88Y-01 17 79564289 79564289 G A NPLOC4 Silent p.V325V 0.08 TCGA-L5-A88Y-01 17 79845801 79845801 A C ALYREF 3'UTR 0.09 TCGA-L5-A88Y-01 18 10803903 10803903 G A PIEZO2 Silent p.Y390Y 0.34 TCGA-L5-A88Y-01 18 22807199 22807199 T G ZNF521 Missense_Mutation p.K228T 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A88Y-01 18 44149518 44149518 C A LOXHD1 Missense_Mutation p.D711Y 0.11 deleterious(0.03) benign(0.348) TCGA-L5-A88Y-01 18 45556117 45556117 C T ZBTB7C Silent p.T458T 0.33 TCGA-L5-A88Y-01 18 51025784 51025784 A C DCC Missense_Mutation p.T1339P 0.23 deleterious(0.03) benign(0.082) TCGA-L5-A88Y-01 18 5419826 5419826 A C EPB41L3 Missense_Mutation p.L464V 0.11 tolerated(0.07) possibly_damaging(0.748) TCGA-L5-A88Y-01 18 65180336 65180336 C A DSEL Missense_Mutation p.A514S 0.54 tolerated(0.71) benign(0.094) TCGA-L5-A88Y-01 18 65180879 65180879 A C DSEL Missense_Mutation p.F333V 0.24 deleterious(0) possibly_damaging(0.628) TCGA-L5-A88Y-01 18 6859860 6859860 A G ARHGAP28 Silent p.K71K 0.32 TCGA-L5-A88Y-01 18 7231548 7231548 T C LRRC30 Silent p.L138L 0.42 TCGA-L5-A88Y-01 19 10961044 10961044 G A C19orf38 Silent p.A47A 0.13 TCGA-L5-A88Y-01 19 11559739 11559739 C T PRKCSH Missense_Mutation p.R426C 0.27 deleterious(0) probably_damaging(1) TCGA-L5-A88Y-01 19 12155836 12155836 G T ZNF878 Missense_Mutation p.S127Y 0.09 tolerated(1) benign(0.129) TCGA-L5-A88Y-01 19 12551898 12551898 C T ZNF443 5'UTR 0.33 TCGA-L5-A88Y-01 19 12937247 12937247 C T RTBDN Intron 0.14 TCGA-L5-A88Y-01 19 22157465 22157465 T G ZNF208 Missense_Mutation p.K124T 0.23 tolerated(0.11) benign(0.423) TCGA-L5-A88Y-01 19 31767704 31767704 A G TSHZ3 Silent p.L999L 0.23 TCGA-L5-A88Y-01 19 3282213 3282213 A T CELF5 Silent p.I280I 0.11 TCGA-L5-A88Y-01 19 3590238 3590238 G T GIPC3 3'UTR 0.17 TCGA-L5-A88Y-01 19 36277340 36277340 G A ARHGAP33 Intron 0.12 TCGA-L5-A88Y-01 19 37945740 37945740 T G ZNF569 Intron 0.22 TCGA-L5-A88Y-01 19 4028168 4028168 C T PIAS4 Silent p.A188A 0.14 TCGA-L5-A88Y-01 19 44636739 44636739 G C ZNF225 Missense_Mutation p.G658R 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A88Y-01 19 47423809 47423809 A T ARHGAP35 Missense_Mutation p.Y626F 0.20 tolerated(0.2) benign(0.091) TCGA-L5-A88Y-01 19 52380556 52380556 C A ZNF577 Missense_Mutation p.A88S 0.19 tolerated(0.69) benign(0.037) TCGA-L5-A88Y-01 19 53644044 53644044 T G ZNF347 Missense_Mutation p.K680N 0.19 deleterious(0.02) possibly_damaging(0.854) TCGA-L5-A88Y-01 19 53993839 53993839 A C ZNF813 Missense_Mutation p.K118T 0.29 tolerated(0.08) possibly_damaging(0.638) TCGA-L5-A88Y-01 19 55255300 55255300 A C KIR2DL3 Missense_Mutation p.E143A 0.29 deleterious(0) probably_damaging(0.996) TCGA-L5-A88Y-01 19 57325234 57325234 T G PEG3 Missense_Mutation p.T1526P 0.44 deleterious(0.01) possibly_damaging(0.744) TCGA-L5-A88Y-01 19 5784127 5784127 G A CTB-54O9.9 3'UTR 0.37 TCGA-L5-A88Y-01 19 58420705 58420705 T A ZNF417 Missense_Mutation p.H314L 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A88Y-01 19 5867696 5867696 C T FUT5 Missense_Mutation p.R14H 0.08 tolerated(0.26) benign(0.029) TCGA-L5-A88Y-01 19 8576290 8576290 G A ZNF414 Intron 0.14 TCGA-L5-A88Y-01 19 9057778 9057778 A C MUC16 Missense_Mutation p.S9890A 0.28 unknown(0) TCGA-L5-A88Y-01 19 9064263 9064263 G C MUC16 Missense_Mutation p.T7728S 0.10 unknown(0) TCGA-L5-A88Y-01 19 9090911 9090911 A T MUC16 Missense_Mutation p.S302T 0.25 unknown(0) TCGA-L5-A88Y-01 19 9298175 9298175 A T OR7D2 3'UTR 0.28 TCGA-L5-A88Y-01 1 101004690 101004690 G A GPR88 Silent p.V56V 0.17 TCGA-L5-A88Y-01 1 103345388 103345388 T G COL11A1 Missense_Mutation p.N1709H 0.16 unknown(0) TCGA-L5-A88Y-01 1 103488484 103488484 T G COL11A1 Missense_Mutation p.K353N 0.24 benign(0.253) TCGA-L5-A88Y-01 1 104160646 104160646 T G AMY2A Missense_Mutation p.V80G 0.27 deleterious(0) possibly_damaging(0.894) TCGA-L5-A88Y-01 1 11298501 11298501 C G MTOR Missense_Mutation p.D654H 0.07 tolerated(0.09) possibly_damaging(0.819) TCGA-L5-A88Y-01 1 12887521 12887521 T G PRAMEF11 Missense_Mutation p.E112D 0.09 tolerated(1) benign(0.004) TCGA-L5-A88Y-01 1 12939811 12939811 T C PRAMEF4 Missense_Mutation p.S331G 0.08 tolerated(0.1) benign(0.068) TCGA-L5-A88Y-01 1 1404131 1404131 T C ATAD3C 3'UTR 0.14 TCGA-L5-A88Y-01 1 1404145 1404145 T C ATAD3C 3'UTR 0.16 TCGA-L5-A88Y-01 1 145116488 145116488 T G SEC22B RNA 0.11 TCGA-L5-A88Y-01 1 152595352 152595352 G A LCE3A Silent p.G76G 0.27 TCGA-L5-A88Y-01 1 154842106 154842106 G - KCNN3 Frame_Shift_Del p.P112Lfs*64 0.12 TCGA-L5-A88Y-01 1 154842117 154842117 G C KCNN3 Missense_Mutation p.F108L 0.10 tolerated_low_confidence(0.46) possibly_damaging(0.682) TCGA-L5-A88Y-01 1 155450898 155450898 G A ASH1L Missense_Mutation p.T588I 0.11 deleterious_low_confidence(0) benign(0.259) TCGA-L5-A88Y-01 1 155740969 155740969 C G GON4L Missense_Mutation p.E845D 0.14 tolerated(0.18) probably_damaging(0.953) TCGA-L5-A88Y-01 1 155979129 155979129 G A SSR2 3'UTR 0.07 TCGA-L5-A88Y-01 1 156622677 156622677 C T BCAN Silent p.P645P 0.22 TCGA-L5-A88Y-01 1 157771340 157771340 A C FCRL1 Missense_Mutation p.L305R 0.27 deleterious(0) probably_damaging(0.957) TCGA-L5-A88Y-01 1 158389870 158389870 G T OR10K2 Missense_Mutation p.Q263K 0.13 tolerated(1) benign(0.001) TCGA-L5-A88Y-01 1 158449984 158449984 T G OR10R2 Missense_Mutation p.L106R 0.19 deleterious(0.01) probably_damaging(0.95) TCGA-L5-A88Y-01 1 158549601 158549601 A C OR10X1 Missense_Mutation p.L30R 0.18 deleterious(0) possibly_damaging(0.83) TCGA-L5-A88Y-01 1 158587366 158587366 T A SPTA1 Missense_Mutation p.K2187N 0.22 deleterious(0.01) possibly_damaging(0.872) TCGA-L5-A88Y-01 1 159283526 159283526 T G OR10J3 Missense_Mutation p.K308N 0.24 tolerated(0.12) benign(0.008) TCGA-L5-A88Y-01 1 159505403 159505403 T C OR10J5 Missense_Mutation p.Y132C 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A88Y-01 1 161821549 161821549 G A ATF6 Missense_Mutation p.V453M 0.23 tolerated(0.09) probably_damaging(0.98) TCGA-L5-A88Y-01 1 173814385 173814385 G C DARS2 Missense_Mutation p.D383H 0.05 tolerated(0.35) benign(0.009) TCGA-L5-A88Y-01 1 17634748 17634748 C A PADI4 Missense_Mutation p.P11T 0.08 tolerated(0.47) probably_damaging(0.979) TCGA-L5-A88Y-01 1 196876502 196876502 T G CFHR4 Missense_Mutation p.F224V 0.16 tolerated(0.19) possibly_damaging(0.625) TCGA-L5-A88Y-01 1 196967353 196967353 C T CFHR5 Missense_Mutation p.R356C 0.15 deleterious(0.02) possibly_damaging(0.632) TCGA-L5-A88Y-01 1 200972872 200972872 G A KIF21B Nonsense_Mutation p.R352* 0.50 TCGA-L5-A88Y-01 1 204951046 204951046 C A NFASC Missense_Mutation p.Q790K 0.36 deleterious(0.05) possibly_damaging(0.561) TCGA-L5-A88Y-01 1 221509292 221509292 C T RP11-421L10.1 RNA 0.06 TCGA-L5-A88Y-01 1 22182389 22182389 G A HSPG2 Silent p.S1864S 0.16 TCGA-L5-A88Y-01 1 228491533 228491533 C T OBSCN Silent p.D4632D 0.29 TCGA-L5-A88Y-01 1 229462713 229462715 TTG - CCSAP In_Frame_Del p.Q136del 0.20 TCGA-L5-A88Y-01 1 235564837 235564837 A G TBCE Silent p.E40E 0.22 TCGA-L5-A88Y-01 1 236143233 236143233 G A NID1 Missense_Mutation p.A1133V 0.11 tolerated(0.6) benign(0.002) TCGA-L5-A88Y-01 1 241519100 241519100 T G RGS7 5'UTR 0.50 TCGA-L5-A88Y-01 1 247163354 247163354 A G ZNF695 Missense_Mutation p.V9A 0.41 deleterious(0) probably_damaging(0.983) TCGA-L5-A88Y-01 1 248023996 248023996 A C TRIM58 Missense_Mutation p.K166N 0.23 tolerated(0.06) benign(0.094) TCGA-L5-A88Y-01 1 248039351 248039351 T G TRIM58 Missense_Mutation p.F341V 0.28 deleterious(0) probably_damaging(0.989) TCGA-L5-A88Y-01 1 248569654 248569654 A C OR2T1 Missense_Mutation p.D120A 0.57 deleterious(0) probably_damaging(0.987) TCGA-L5-A88Y-01 1 32200982 32200982 C T BAI2 Intron 0.47 TCGA-L5-A88Y-01 1 41087745 41087745 G T RIMS3 3'UTR 0.11 TCGA-L5-A88Y-01 1 45504648 45504648 C T ZSWIM5 Silent p.E618E 0.10 TCGA-L5-A88Y-01 1 79107218 79107218 T C IFI44L Silent p.I416I 0.08 TCGA-L5-A88Y-01 1 89430537 89430537 T C CCBL2 Missense_Mutation p.Q143R 0.33 deleterious(0.03) probably_damaging(0.99) TCGA-L5-A88Y-01 20 15948255 15948255 G A MACROD2 Missense_Mutation p.R322H 0.06 tolerated_low_confidence(0.23) benign(0.002) TCGA-L5-A88Y-01 20 25848616 25848616 G C FAM182B 5'Flank 0.06 TCGA-L5-A88Y-01 20 30432303 30432303 C T FOXS1 3'UTR 0.08 TCGA-L5-A88Y-01 20 45174017 45174017 G C OCSTAMP Missense_Mutation p.D332E 0.37 tolerated(0.47) benign(0.038) TCGA-L5-A88Y-01 20 58449037 58449037 A C SYCP2 Silent p.T1143T 0.34 TCGA-L5-A88Y-01 20 60881153 60881153 G A ADRM1 Intron 0.38 TCGA-L5-A88Y-01 21 10906905 10906905 T G TPTE Nonstop_Mutation p.*552Yext*2 0.05 TCGA-L5-A88Y-01 21 31538834 31538834 A C CLDN17 Silent p.A34A 0.18 TCGA-L5-A88Y-01 21 31654414 31654414 T G KRTAP24-1 3'UTR 0.19 TCGA-L5-A88Y-01 21 44488680 44488680 C T CBS Silent p.G85G 0.31 TCGA-L5-A88Y-01 22 16448931 16448931 A C OR11H1 Missense_Mutation p.F292V 0.42 tolerated(0.18) possibly_damaging(0.483) TCGA-L5-A88Y-01 22 17071870 17071870 T C CCT8L2 Missense_Mutation p.K524R 0.59 tolerated(0.11) benign(0.179) TCGA-L5-A88Y-01 22 26243460 26243460 C T MYO18B Missense_Mutation p.P1206S 0.16 tolerated(0.51) benign(0.005) TCGA-L5-A88Y-01 22 46114351 46114351 C T ATXN10 Missense_Mutation p.P236S 0.10 tolerated(0.33) benign(0.001) TCGA-L5-A88Y-01 2 101095887 101095887 C T NMS Nonsense_Mutation p.R112* 0.27 TCGA-L5-A88Y-01 2 102782675 102782675 C T IL1R1 Missense_Mutation p.H197Y 0.07 deleterious(0.03) possibly_damaging(0.793) TCGA-L5-A88Y-01 2 105882222 105882222 G A TGFBRAP1 3'UTR 0.65 TCGA-L5-A88Y-01 2 107429633 107429633 A C ST6GAL2 Intron 0.57 TCGA-L5-A88Y-01 2 141598615 141598615 A C LRP1B Missense_Mutation p.N1662K 0.52 benign(0.403) TCGA-L5-A88Y-01 2 157182445 157182445 T A NR4A2 Missense_Mutation p.K536N 0.16 deleterious(0.01) possibly_damaging(0.74) TCGA-L5-A88Y-01 2 164467050 164467050 C A FIGN Missense_Mutation p.G431V 0.45 tolerated(0.09) benign(0.002) TCGA-L5-A88Y-01 2 175006658 175006658 T C OLA1 Missense_Mutation p.I148M 0.52 deleterious(0) probably_damaging(0.996) TCGA-L5-A88Y-01 2 179413589 179413589 C T TTN Missense_Mutation p.A30922T 0.08 TCGA-L5-A88Y-01 2 179442443 179442443 T G TTN Missense_Mutation p.T22904P 0.77 TCGA-L5-A88Y-01 2 187611893 187611893 G A FAM171B Missense_Mutation p.V214I 0.10 tolerated(0.14) benign(0.038) TCGA-L5-A88Y-01 2 203972721 203972722 - T NBEAL1 Frame_Shift_Ins p.A558Vfs*18 0.13 TCGA-L5-A88Y-01 2 207173451 207173451 A G ZDBF2 Missense_Mutation p.D1400G 0.54 deleterious(0.01) possibly_damaging(0.539) TCGA-L5-A88Y-01 2 220247882 220247882 G A DNPEP Missense_Mutation p.R303C 0.47 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 2 220424112 220424112 G A OBSL1 Missense_Mutation p.R1021C 0.69 tolerated(0.12) benign(0.053) TCGA-L5-A88Y-01 2 237246849 237246849 G A IQCA1 Silent p.Y711Y 0.15 TCGA-L5-A88Y-01 2 241556456 241556456 A G GPR35 Intron 0.20 TCGA-L5-A88Y-01 2 48692779 48692779 A C PPP1R21 Missense_Mutation p.K299Q 0.55 deleterious(0.05) probably_damaging(0.999) TCGA-L5-A88Y-01 2 60688557 60688557 T C BCL11A Missense_Mutation p.E497G 0.56 deleterious(0.02) benign(0.403) TCGA-L5-A88Y-01 3 121341354 121341354 C A FBXO40 Silent p.R360R 0.17 TCGA-L5-A88Y-01 3 126390589 126390589 A C NUP210P1 RNA 0.54 TCGA-L5-A88Y-01 3 127379379 127379379 G A PODXL2 Missense_Mutation p.E170K 0.22 tolerated(0.21) benign(0.055) TCGA-L5-A88Y-01 3 130715526 130715526 G C ATP2C1 Missense_Mutation p.S744T 0.11 deleterious(0) possibly_damaging(0.771) TCGA-L5-A88Y-01 3 131388593 131388593 A C CPNE4 Missense_Mutation p.L203V 0.19 deleterious(0) benign(0.285) TCGA-L5-A88Y-01 3 140277690 140277690 A T CLSTN2 Nonsense_Mutation p.K678* 0.12 TCGA-L5-A88Y-01 3 142567267 142567267 G A PCOLCE2 Silent p.L80L 0.30 TCGA-L5-A88Y-01 3 146311900 146311900 T A PLSCR5 Missense_Mutation p.K87I 0.42 deleterious(0.01) probably_damaging(0.983) TCGA-L5-A88Y-01 3 16629316 16629316 C G DAZL 3'UTR 0.11 TCGA-L5-A88Y-01 3 169656105 169656105 G C SAMD7 Splice_Site p.X385_splice 0.19 TCGA-L5-A88Y-01 3 3030070 3030070 T G CNTN4 Missense_Mutation p.V467G 0.34 deleterious(0.02) probably_damaging(0.916) TCGA-L5-A88Y-01 3 35723255 35723255 A T ARPP21 Missense_Mutation p.Q4H 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-L5-A88Y-01 3 432842 432842 G A CHL1 Missense_Mutation p.V931I 0.10 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 3 45152314 45152314 A C CDCP1 Silent p.S225S 0.36 TCGA-L5-A88Y-01 3 77542444 77542444 A C ROBO2 Missense_Mutation p.E255D 0.53 tolerated(1) possibly_damaging(0.523) TCGA-L5-A88Y-01 3 86116284 86116284 T C CADM2 3'Flank 0.46 TCGA-L5-A88Y-01 3 9426331 9426331 C T THUMPD3 Nonsense_Mutation p.Q495* 0.24 TCGA-L5-A88Y-01 3 97167479 97167479 A C EPHA6 Missense_Mutation p.K600T 0.15 tolerated(0.09) possibly_damaging(0.781) TCGA-L5-A88Y-01 4 102839168 102839168 T G BANK1 Missense_Mutation p.L343R 0.15 deleterious(0) probably_damaging(0.919) TCGA-L5-A88Y-01 4 115767130 115767130 G A NDST4 Missense_Mutation p.P655L 0.48 deleterious(0.02) probably_damaging(0.997) TCGA-L5-A88Y-01 4 154624501 154624501 C G TLR2 Missense_Mutation p.L148V 0.13 tolerated(0.06) possibly_damaging(0.887) TCGA-L5-A88Y-01 4 155487760 155487760 T G FGB Silent p.S142S 0.18 TCGA-L5-A88Y-01 4 156634718 156634718 G A GUCY1A3 Missense_Mutation p.E519K 0.24 tolerated(0.19) benign(0.015) TCGA-L5-A88Y-01 4 158282259 158282259 G A GRIA2 Intron 0.05 TCGA-L5-A88Y-01 4 162508693 162508693 T G FSTL5 Missense_Mutation p.K310T 0.22 deleterious(0) probably_damaging(0.95) TCGA-L5-A88Y-01 4 17659979 17659979 T G FAM184B Missense_Mutation p.E677D 0.13 tolerated(0.07) benign(0.05) TCGA-L5-A88Y-01 4 44176644 44176644 A T KCTD8 3'UTR 0.23 TCGA-L5-A88Y-01 4 56230195 56230195 T C SRD5A3 Intron 0.34 TCGA-L5-A88Y-01 4 5733348 5733348 G T EVC Missense_Mutation p.R194L 0.29 deleterious(0.02) benign(0.148) TCGA-L5-A88Y-01 5 112203218 112203221 GAAA - SRP19 Frame_Shift_Del p.K142Rfs*37 0.22 TCGA-L5-A88Y-01 5 135651466 135651466 T G TRPC7 Missense_Mutation p.N261T 0.16 deleterious(0.01) benign(0.403) TCGA-L5-A88Y-01 5 139507804 139507804 G A IGIP 5'UTR 0.12 TCGA-L5-A88Y-01 5 139866549 139866549 C T ANKHD1 Missense_Mutation p.R717C 0.15 unknown(0) TCGA-L5-A88Y-01 5 140553146 140553146 C T PCDHB7 Missense_Mutation p.R244W 0.08 deleterious_low_confidence(0) benign(0.071) TCGA-L5-A88Y-01 5 140553147 140553147 G A PCDHB7 Missense_Mutation p.R244Q 0.22 tolerated_low_confidence(1) benign(0) TCGA-L5-A88Y-01 5 140764501 140764501 G A PCDHGA7 Missense_Mutation p.E679K 0.13 tolerated_low_confidence(0.39) benign(0.002) TCGA-L5-A88Y-01 5 147261193 147261193 A G SCGB3A2 Silent p.E80E 0.22 TCGA-L5-A88Y-01 5 153182010 153182010 A C GRIA1 Missense_Mutation p.E837A 0.26 deleterious(0) probably_damaging(0.996) TCGA-L5-A88Y-01 5 154395287 154395287 T G KIF4B Missense_Mutation p.L623R 0.15 deleterious(0) possibly_damaging(0.799) TCGA-L5-A88Y-01 5 161116300 161116300 T G GABRA6 Missense_Mutation p.F163V 0.37 deleterious(0) probably_damaging(0.996) TCGA-L5-A88Y-01 5 32791060 32791060 T G NPR3 3'UTR 0.44 TCGA-L5-A88Y-01 5 37142579 37142579 C T C5orf42 Missense_Mutation p.R2768H 0.37 tolerated(1) benign(0) TCGA-L5-A88Y-01 5 37815904 37815904 T G GDNF Missense_Mutation p.N179T 0.28 tolerated(0.05) possibly_damaging(0.855) TCGA-L5-A88Y-01 5 40945391 40945391 G A C7 Missense_Mutation p.R220Q 0.09 tolerated(0.56) benign(0.001) TCGA-L5-A88Y-01 5 52780077 52780077 C T FST Silent p.C225C 0.21 TCGA-L5-A88Y-01 5 85581660 85581660 A C NBPF22P RNA 0.12 TCGA-L5-A88Y-01 5 85592190 85592190 A C NBPF22P RNA 0.09 TCGA-L5-A88Y-01 6 10726222 10726222 G A TMEM14C Silent p.R60R 0.44 TCGA-L5-A88Y-01 6 119136510 119136510 C T MCM9 Missense_Mutation p.R970H 0.44 tolerated_low_confidence(0.2) benign(0.005) TCGA-L5-A88Y-01 6 153075379 153075379 A C VIP Missense_Mutation p.Q62H 0.35 deleterious(0.02) benign(0.033) TCGA-L5-A88Y-01 6 22146924 22146924 G A CASC15 5'Flank 0.08 TCGA-L5-A88Y-01 6 29395337 29395337 A C OR11A1 Missense_Mutation p.L28V 0.65 tolerated(0.08) benign(0.027) TCGA-L5-A88Y-01 6 41903426 41903426 G C CCND3 3'UTR 0.03 TCGA-L5-A88Y-01 6 42835024 42835024 A G GLTSCR1L 3'UTR 0.03 TCGA-L5-A88Y-01 6 45518323 45518323 G T RUNX2 3'UTR 0.24 TCGA-L5-A88Y-01 6 46605593 46605593 C T CYP39A1 Missense_Mutation p.G204E 0.68 deleterious(0) probably_damaging(0.994) TCGA-L5-A88Y-01 6 47759679 47759679 G A OPN5 Missense_Mutation p.R131Q 0.43 deleterious(0) probably_damaging(0.971) TCGA-L5-A88Y-01 6 90637490 90637490 T C BACH2 3'UTR 0.31 TCGA-L5-A88Y-01 7 100229495 100229495 G T TFR2 Missense_Mutation p.A347E 0.08 tolerated(0.56) benign(0) TCGA-L5-A88Y-01 7 100608651 100608651 T C MUC3A Intron 0.06 TCGA-L5-A88Y-01 7 103276014 103276014 T G RELN Silent p.R775R 0.36 TCGA-L5-A88Y-01 7 132409674 132409674 G C AC009365.3 5'UTR 0.45 TCGA-L5-A88Y-01 7 154862805 154862805 C A HTR5A-AS1 Missense_Mutation p.R70M 0.50 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-L5-A88Y-01 7 21857902 21857902 A C DNAH11 Missense_Mutation p.T3553P 0.08 possibly_damaging(0.602) TCGA-L5-A88Y-01 7 37988475 37988475 A C EPDR1 Silent p.G101G 0.10 TCGA-L5-A88Y-01 7 38467905 38467905 A G AMPH Intron 0.29 TCGA-L5-A88Y-01 7 43918051 43918051 C T URGCP Silent p.L337L 0.15 TCGA-L5-A88Y-01 7 50444260 50444260 G A IKZF1 Missense_Mutation p.D64N 0.12 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 7 54636955 54636955 G A VSTM2A 3'UTR 0.70 TCGA-L5-A88Y-01 7 5769095 5769095 C T RNF216 Missense_Mutation p.E453K 0.07 deleterious(0.02) probably_damaging(0.997) TCGA-L5-A88Y-01 7 63537987 63537987 T G ZNF727 Missense_Mutation p.F187C 0.26 deleterious(0.01) probably_damaging(0.981) TCGA-L5-A88Y-01 7 63809576 63809576 A C ZNF736 3'UTR 0.32 TCGA-L5-A88Y-01 7 64452678 64452678 T G ERV3-1 Missense_Mutation p.T243P 0.32 deleterious(0.04) probably_damaging(0.944) TCGA-L5-A88Y-01 7 82585690 82585690 T A PCLO Nonsense_Mutation p.R1527* 0.38 TCGA-L5-A88Y-01 7 89906422 89906422 C A C7orf63 Silent p.A340A 0.22 TCGA-L5-A88Y-01 7 96640260 96640260 C T DLX6 3'UTR 0.14 TCGA-L5-A88Y-01 7 97920541 97920541 G A BRI3 Missense_Mutation p.A122T 0.09 deleterious(0) probably_damaging(0.995) TCGA-L5-A88Y-01 8 105053555 105053555 A C RIMS2 Intron 0.50 TCGA-L5-A88Y-01 8 105263871 105263871 T G RIMS2 Silent p.S1291S 0.13 TCGA-L5-A88Y-01 8 105361752 105361752 G T DCSTAMP Silent p.V324V 0.53 TCGA-L5-A88Y-01 8 139163621 139163621 A C FAM135B Missense_Mutation p.L1033V 0.12 tolerated(0.1) benign(0.439) TCGA-L5-A88Y-01 8 139165036 139165036 T G FAM135B Missense_Mutation p.K561T 0.15 deleterious(0.02) possibly_damaging(0.632) TCGA-L5-A88Y-01 8 145660922 145660922 C T TONSL Silent p.P929P 0.13 TCGA-L5-A88Y-01 8 38994204 38994204 A G ADAM32 Missense_Mutation p.D56G 0.08 deleterious(0.04) possibly_damaging(0.883) TCGA-L5-A88Y-01 8 67963529 67963529 T A COPS5 Missense_Mutation p.K236I 0.13 deleterious(0.03) benign(0.043) TCGA-L5-A88Y-01 8 73850086 73850086 T C KCNB2 Silent p.N832N 0.05 TCGA-L5-A88Y-01 8 77617016 77617016 T A ZFHX4 Missense_Mutation p.D231E 0.08 possibly_damaging(0.621) TCGA-L5-A88Y-01 8 77778405 77778405 A C ZFHX4 3'UTR 0.12 TCGA-L5-A88Y-01 8 91063929 91063929 G A DECR1 Missense_Mutation p.E304K 0.10 tolerated(0.18) benign(0.016) TCGA-L5-A88Y-01 9 101818680 101818680 G A COL15A1 Missense_Mutation p.G1111R 0.19 tolerated(0.08) probably_damaging(0.998) TCGA-L5-A88Y-01 9 107289423 107289423 A C OR13C4 Missense_Mutation p.L23R 0.25 deleterious(0) benign(0.352) TCGA-L5-A88Y-01 9 117139358 117139358 G A AKNA Silent p.L243L 0.09 TCGA-L5-A88Y-01 9 125512151 125512151 A T OR1L6 Missense_Mutation p.S9C 0.12 deleterious(0.02) possibly_damaging(0.778) TCGA-L5-A88Y-01 9 125582781 125582781 C T PDCL Silent p.E163E 0.17 TCGA-L5-A88Y-01 9 130491861 130491861 A G TTC16 Missense_Mutation p.E589G 0.41 tolerated(0.07) possibly_damaging(0.642) TCGA-L5-A88Y-01 9 133987046 133987046 C T AIF1L Silent p.F78F 0.10 TCGA-L5-A88Y-01 9 137967648 137967648 A C OLFM1 Missense_Mutation p.Q32H 0.42 tolerated(0.13) benign(0.014) TCGA-L5-A88Y-01 9 139702239 139702239 G C RABL6 5'Flank 0.17 TCGA-L5-A88Y-01 9 140772595 140772595 C T CACNA1B Silent p.T70T 0.15 TCGA-L5-A88Y-01 9 23690473 23690473 A C ELAVL2 3'UTR 0.07 TCGA-L5-A88Y-01 9 35805514 35805514 G A NPR2 Missense_Mutation p.A632T 0.10 tolerated(0.4) benign(0.038) TCGA-L5-A88Y-01 9 43625279 43625279 T G SPATA31A6 Missense_Mutation p.E1136D 0.20 tolerated(0.59) possibly_damaging(0.547) TCGA-L5-A88Y-01 9 73151088 73151088 G C TRPM3 Silent p.A1635A 0.08 TCGA-L5-A88Y-01 9 8317144 8317144 A C PTPRD 3'UTR 0.26 TCGA-L5-A88Y-01 9 95055805 95055805 T A IARS 5'UTR 0.29 TCGA-L5-A88Y-01 X 136652677 136652677 T G ZIC3 3'UTR 0.59 TCGA-L5-A88Y-01 X 136653073 136653073 T G ZIC3 3'UTR 0.49 TCGA-L5-A88Y-01 X 141290946 141290946 T G MAGEC2 Missense_Mutation p.K276N 0.70 tolerated(0.06) benign(0.145) TCGA-L5-A88Y-01 X 148037500 148037500 A C AFF2 Missense_Mutation p.E642A 0.58 tolerated(0.11) benign(0.226) TCGA-L5-A88Y-01 X 153171320 153171320 G A AVPR2 Missense_Mutation p.M120I 0.19 tolerated(0.59) possibly_damaging(0.771) TCGA-L5-A88Y-01 X 1585033 1585033 G A P2RY8 Missense_Mutation p.A140V 0.43 deleterious(0) probably_damaging(0.999) TCGA-L5-A88Y-01 X 35944254 35944254 G T CXorf22 Nonsense_Mutation p.E124* 0.70 TCGA-L5-A88Y-01 X 36368183 36368183 A G CXorf30 Silent p.Q324Q 0.65 TCGA-L5-A88Y-01 X 51075717 51075717 G A NUDT10 Intron 0.61 TCGA-L5-A88Y-01 X 53963172 53963172 T C PHF8 3'UTR 0.63 TCGA-L5-A88Y-01 X 54823505 54823505 G A ITIH6 Missense_Mutation p.R43C 0.65 tolerated(0.11) benign(0.091) TCGA-L5-A88Y-01 X 65815587 65815587 A C EDA2R 3'Flank 0.55 TCGA-L5-A88Y-01 X 75649489 75649489 G A MAGEE1 Missense_Mutation p.S389N 0.56 tolerated_low_confidence(0.08) benign(0.08) TCGA-L5-A88Z-01 10 104809565 104809565 G T CNNM2 Nonsense_Mutation p.E575* 0.34 TCGA-L5-A88Z-01 10 29769362 29769362 C T SVIL Intron 0.36 TCGA-L5-A88Z-01 10 30736816 30736816 G A MAP3K8 Missense_Mutation p.A148T 0.37 tolerated(0.09) possibly_damaging(0.852) TCGA-L5-A88Z-01 10 50691461 50691461 G T ERCC6 Missense_Mutation p.H641Q 0.41 deleterious(0.03) benign(0.374) TCGA-L5-A88Z-01 10 76994397 76994397 G A COMTD1 Nonsense_Mutation p.R203* 0.39 TCGA-L5-A88Z-01 11 102712941 102712941 C A MMP3 Missense_Mutation p.G190V 0.37 deleterious(0) probably_damaging(0.996) TCGA-L5-A88Z-01 11 117352705 117352705 G A DSCAML1 Silent p.N904N 0.51 TCGA-L5-A88Z-01 11 122722490 122722490 G A CRTAM Missense_Mutation p.V95M 0.44 deleterious(0.04) benign(0.128) TCGA-L5-A88Z-01 11 1260766 1260766 C A MUC5B Missense_Mutation p.H1185N 0.33 unknown(0) TCGA-L5-A88Z-01 11 36599943 36599943 T C RAG1 3'UTR 0.09 TCGA-L5-A88Z-01 11 48131629 48131630 GT - PTPRJ Splice_Site p.X39_splice 0.38 TCGA-L5-A88Z-01 11 51412174 51412174 G A OR4A5 Silent p.T74T 0.42 TCGA-L5-A88Z-01 11 58190660 58190660 G A OR5B2 Silent p.L25L 0.35 TCGA-L5-A88Z-01 11 63585506 63585506 C T C11orf84 Silent p.D119D 0.09 TCGA-L5-A88Z-01 11 71952305 71952305 G A PHOX2A Silent p.S82S 0.29 TCGA-L5-A88Z-01 11 85373022 85373022 A G CREBZF 3'UTR 0.07 TCGA-L5-A88Z-01 12 124114969 124114969 A G EIF2B1 Missense_Mutation p.I76T 0.05 deleterious(0) probably_damaging(0.945) TCGA-L5-A88Z-01 12 27951413 27951413 A T KLHL42 3'UTR 0.20 TCGA-L5-A88Z-01 12 4598858 4598858 G C C12orf4 3'UTR 0.30 TCGA-L5-A88Z-01 12 89746259 89746259 G C DUSP6 5'UTR 0.39 TCGA-L5-A88Z-01 13 53418445 53418445 T C PCDH8 3'UTR 0.35 TCGA-L5-A88Z-01 14 20528746 20528747 - C OR4L1 Frame_Shift_Ins p.L183Pfs*9 0.29 TCGA-L5-A88Z-01 14 39716400 39716400 C G MIA2 Missense_Mutation p.R208G 0.31 tolerated(0.34) benign(0.001) TCGA-L5-A88Z-01 14 61176524 61176524 G A SIX4 3'UTR 0.39 TCGA-L5-A88Z-01 14 86092845 86092845 A G FLRT2 3'UTR 0.05 TCGA-L5-A88Z-01 14 89623547 89623547 G C FOXN3 3'UTR 0.36 TCGA-L5-A88Z-01 14 99638792 99638792 C A BCL11B 3'UTR 0.32 TCGA-L5-A88Z-01 15 23049305 23049306 - C NIPA1 Frame_Shift_Ins p.L172Afs*48 0.33 TCGA-L5-A88Z-01 15 35222464 35222464 G A AQR Silent p.L337L 0.38 TCGA-L5-A88Z-01 15 42984297 42984297 T G STARD9 Missense_Mutation p.N3507K 0.42 benign(0.133) TCGA-L5-A88Z-01 15 48426713 48426713 C T SLC24A5 Missense_Mutation p.A156V 0.53 tolerated(0.99) benign(0.044) TCGA-L5-A88Z-01 15 72700132 72700132 G A TMEM202 Silent p.P240P 0.44 TCGA-L5-A88Z-01 15 77310844 77310844 C T PSTPIP1 Missense_Mutation p.R62W 0.28 deleterious(0) probably_damaging(0.997) TCGA-L5-A88Z-01 16 46617507 46617507 A G SHCBP1 Silent p.N538N 0.08 TCGA-L5-A88Z-01 16 57101728 57101729 - G NLRC5 Frame_Shift_Ins p.K1497Efs*35 0.28 TCGA-L5-A88Z-01 16 57113144 57113144 A G NLRC5 Missense_Mutation p.N1726S 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A88Z-01 16 67702161 67702161 G A C16orf86 Silent p.L204L 0.50 TCGA-L5-A88Z-01 17 26902474 26902474 G A ALDOC Missense_Mutation p.P26L 0.26 tolerated(0.1) benign(0.068) TCGA-L5-A88Z-01 17 56282841 56282841 C - MKS1 3'UTR 0.10 TCGA-L5-A88Z-01 17 56620413 56620413 G T C17orf47 Missense_Mutation p.P379T 0.35 tolerated(0.08) probably_damaging(0.958) TCGA-L5-A88Z-01 17 56676583 56676583 G C TEX14 Nonsense_Mutation p.S714* 0.13 TCGA-L5-A88Z-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.34 deleterious(0) probably_damaging(0.985) TCGA-L5-A88Z-01 17 7579359 7579359 G A TP53 Missense_Mutation p.R110C 0.53 tolerated(0.14) probably_damaging(0.985) TCGA-L5-A88Z-01 18 76753906 76753906 G A SALL3 Missense_Mutation p.V639I 0.33 tolerated(0.57) benign(0.008) TCGA-L5-A88Z-01 19 10602340 10602340 C T KEAP1 Missense_Mutation p.R413H 0.37 deleterious(0) probably_damaging(0.962) TCGA-L5-A88Z-01 19 10624599 10624599 C T S1PR5 Silent p.S363S 0.65 TCGA-L5-A88Z-01 19 1785540 1785540 G A ATP8B3 Silent p.P1107P 0.38 TCGA-L5-A88Z-01 19 46124822 46124822 G A EML2 Silent p.D506D 0.37 TCGA-L5-A88Z-01 19 55889435 55889435 G A TMEM190 Missense_Mutation p.R133Q 0.43 tolerated_low_confidence(0.14) possibly_damaging(0.776) TCGA-L5-A88Z-01 19 56133668 56133668 A T ZNF784 Missense_Mutation p.L141M 0.30 tolerated(0.16) possibly_damaging(0.855) TCGA-L5-A88Z-01 19 5680249 5680249 C T C19orf70 Intron 0.36 TCGA-L5-A88Z-01 19 8455255 8455255 G T RAB11B 5'UTR 0.30 TCGA-L5-A88Z-01 1 12082207 12082207 C T MIIP Missense_Mutation p.T57M 0.71 tolerated(0.23) benign(0.424) TCGA-L5-A88Z-01 1 160390311 160390311 G A VANGL2 Missense_Mutation p.G304D 0.61 deleterious(0.02) possibly_damaging(0.824) TCGA-L5-A88Z-01 1 170129813 170129813 A G METTL11B Silent p.K103K 0.28 TCGA-L5-A88Z-01 1 176564652 176564652 G A PAPPA2 Missense_Mutation p.D638N 0.30 tolerated(0.34) benign(0.435) TCGA-L5-A88Z-01 1 224495770 224495770 T A NVL Missense_Mutation p.S180C 0.25 tolerated(0.24) benign(0.002) TCGA-L5-A88Z-01 1 228495134 228495134 C T OBSCN Missense_Mutation p.T5080M 0.56 benign(0.038) TCGA-L5-A88Z-01 1 240370709 240370709 C T FMN2 Missense_Mutation p.S866F 0.31 unknown(0) TCGA-L5-A88Z-01 1 27106916 27106916 A - ARID1A Frame_Shift_Del p.Q2176Rfs*24 0.36 TCGA-L5-A88Z-01 1 89599004 89599004 C G GBP7 Missense_Mutation p.K533N 0.38 deleterious(0.01) probably_damaging(0.975) TCGA-L5-A88Z-01 20 20177348 20177348 G T C20orf26 Silent p.L575L 0.37 TCGA-L5-A88Z-01 20 25257924 25257924 G A PYGB Missense_Mutation p.A273T 0.41 tolerated(0.08) possibly_damaging(0.702) TCGA-L5-A88Z-01 20 62103553 62103553 C T KCNQ2 Silent p.P88P 0.31 TCGA-L5-A88Z-01 21 22664561 22664561 G A NCAM2 Missense_Mutation p.V207M 0.10 deleterious(0) probably_damaging(0.96) TCGA-L5-A88Z-01 22 24379392 24379392 C T GSTT1 Missense_Mutation p.R107Q 0.73 tolerated(0.18) possibly_damaging(0.487) TCGA-L5-A88Z-01 22 28293845 28293845 T A PITPNB Missense_Mutation p.E78V 0.07 deleterious(0.02) benign(0.072) TCGA-L5-A88Z-01 22 32756307 32756307 C T RFPL3 Nonsense_Mutation p.R148* 0.45 TCGA-L5-A88Z-01 2 107074073 107074073 G A RGPD3 Missense_Mutation p.L68F 0.23 tolerated(0.14) benign(0.425) TCGA-L5-A88Z-01 2 131097266 131097266 G A CCDC115 Intron 0.53 TCGA-L5-A88Z-01 2 163000642 163000642 C T GCG Missense_Mutation p.R144H 0.23 deleterious(0) probably_damaging(0.993) TCGA-L5-A88Z-01 2 178098975 178098975 A T NFE2L2 Missense_Mutation p.W24R 0.52 deleterious(0) probably_damaging(1) TCGA-L5-A88Z-01 2 182794855 182794855 A G SSFA2 3'UTR 0.36 TCGA-L5-A88Z-01 2 196709863 196709863 C A DNAH7 Missense_Mutation p.L2936F 0.09 tolerated(0.06) benign(0.02) TCGA-L5-A88Z-01 2 226378162 226378162 G A NYAP2 Missense_Mutation p.M99I 0.09 tolerated(0.07) benign(0.007) TCGA-L5-A88Z-01 2 54040157 54040157 G A ERLEC1 Silent p.K391K 0.42 TCGA-L5-A88Z-01 2 74597805 74597805 G A DCTN1 Missense_Mutation p.R331W 0.22 deleterious(0) possibly_damaging(0.834) TCGA-L5-A88Z-01 2 96944361 96944361 G A SNRNP200 Silent p.I1804I 0.29 TCGA-L5-A88Z-01 3 101313192 101313192 A G PCNP 3'UTR 0.44 TCGA-L5-A88Z-01 3 136141419 136141419 C A STAG1 Missense_Mutation p.V624L 0.56 deleterious(0) benign(0.061) TCGA-L5-A88Z-01 3 180326257 180326257 G C TTC14 Intron 0.33 TCGA-L5-A88Z-01 3 4703790 4703790 G C ITPR1 Missense_Mutation p.D411H 0.51 deleterious(0) probably_damaging(1) TCGA-L5-A88Z-01 3 50327194 50327195 CT - IFRD2 Splice_Site p.X247_splice 0.38 TCGA-L5-A88Z-01 4 106197248 106197248 G A TET2 Missense_Mutation p.G1861R 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A88Z-01 4 109862572 109862572 G T COL25A1 Missense_Mutation p.H172N 0.39 tolerated(0.32) unknown(0) TCGA-L5-A88Z-01 4 123118429 123118429 G A KIAA1109 Missense_Mutation p.G430S 0.38 probably_damaging(0.999) TCGA-L5-A88Z-01 4 144793349 144793349 A T GYPE 3'UTR 0.22 TCGA-L5-A88Z-01 4 153247174 153247175 - TATT FBXW7 Nonsense_Mutation p.R543Kfs*2 0.27 TCGA-L5-A88Z-01 4 153247289 153247289 G C FBXW7 Missense_Mutation p.R505G 0.49 deleterious(0) probably_damaging(1) TCGA-L5-A88Z-01 4 175899049 175899049 G A ADAM29 Silent p.T791T 0.42 TCGA-L5-A88Z-01 5 127614384 127614384 T C FBN2 Missense_Mutation p.T2430A 0.28 deleterious(0) probably_damaging(0.968) TCGA-L5-A88Z-01 5 132096579 132096579 G A SEPT8 Missense_Mutation p.R401W 0.36 deleterious(0) probably_damaging(0.941) TCGA-L5-A88Z-01 5 156727797 156727797 T C CYFIP2 Silent p.S128S 0.20 TCGA-L5-A88Z-01 5 180661650 180661657 CTGGGCTT - TRIM41 Frame_Shift_Del p.G591Qfs*61 0.16 TCGA-L5-A88Z-01 5 21802277 21802277 T C CDH12 Missense_Mutation p.R419G 0.35 deleterious(0.01) possibly_damaging(0.873) TCGA-L5-A88Z-01 5 35013131 35013131 C T AGXT2 Silent p.A372A 0.39 TCGA-L5-A88Z-01 5 59892880 59892880 A C DEPDC1B 3'UTR 0.41 TCGA-L5-A88Z-01 5 96097652 96097652 A T ERAP1 3'UTR 0.45 TCGA-L5-A88Z-01 6 117704507 117704507 C A ROS1 Missense_Mutation p.Q823H 0.49 tolerated(0.25) probably_damaging(0.999) TCGA-L5-A88Z-01 6 26124452 26124452 C G HIST1H2AC 5'UTR 0.30 TCGA-L5-A88Z-01 6 70965094 70965094 C G COL9A1 Splice_Site p.X502_splice 0.34 TCGA-L5-A88Z-01 7 100414847 100414847 C T EPHB4 Missense_Mutation p.G519S 0.08 tolerated(1) benign(0.01) TCGA-L5-A88Z-01 7 101256805 101256805 C G MYL10 Missense_Mutation p.D211H 0.27 deleterious(0.01) probably_damaging(0.986) TCGA-L5-A88Z-01 7 110765259 110765260 - T LRRN3 3'UTR 0.31 TCGA-L5-A88Z-01 7 123388731 123388731 G C WASL Missense_Mutation p.L20V 0.10 tolerated(0.45) unknown(0) TCGA-L5-A88Z-01 7 131913111 131913111 G A PLXNA4 Silent p.N574N 0.44 TCGA-L5-A88Z-01 7 141176691 141176691 A C TMEM178B 3'UTR 0.09 TCGA-L5-A88Z-01 7 158526647 158526647 G A ESYT2 3'UTR 0.21 TCGA-L5-A88Z-01 7 16823720 16823720 G A TSPAN13 3'UTR 0.38 TCGA-L5-A88Z-01 7 22852721 22852721 C G TOMM7 3'UTR 0.41 TCGA-L5-A88Z-01 7 2645596 2645596 C T IQCE Silent p.S610S 0.42 TCGA-L5-A88Z-01 7 75915205 75915205 C T SRRM3 3'UTR 0.10 TCGA-L5-A88Z-01 7 97821009 97821009 G A LMTK2 Missense_Mutation p.R411Q 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A88Z-01 8 10756035 10756035 G A XKR6 Silent p.T451T 0.34 TCGA-L5-A88Z-01 8 118811971 118811971 G A EXT1 Nonsense_Mutation p.R741* 0.35 TCGA-L5-A88Z-01 8 1496874 1496874 C T DLGAP2 Silent p.S5S 0.30 TCGA-L5-A88Z-01 8 25287265 25287265 A T KCTD9 3'UTR 0.08 TCGA-L5-A88Z-01 8 27296648 27296648 G T PTK2B Missense_Mutation p.A582S 0.26 deleterious(0) benign(0.305) TCGA-L5-A88Z-01 8 37633454 37633454 G T PROSC Nonsense_Mutation p.E206* 0.33 TCGA-L5-A88Z-01 9 106864708 106864708 A C SMC2 Missense_Mutation p.T292P 0.43 tolerated(0.35) benign(0.217) TCGA-L5-A88Z-01 9 96441108 96441108 A T PHF2 3'UTR 0.42 TCGA-L5-A88Z-01 X 2799152 2799152 C T GYG2 Silent p.S468S 0.09 TCGA-L5-A88Z-01 X 69455666 69455666 A G AWAT1 Silent p.P59P 0.69 TCGA-L5-A891-01 10 123845396 123845396 C T TACC2 Silent p.A1127A 0.14 TCGA-L5-A891-01 10 125771915 125771915 G A CHST15 Missense_Mutation p.R477C 0.17 deleterious(0) probably_damaging(0.993) TCGA-L5-A891-01 10 135202509 135202509 A T PAOX Missense_Mutation p.M391L 0.19 deleterious(0) benign(0.174) TCGA-L5-A891-01 10 32635985 32635985 A G EPC1 5'UTR 0.34 TCGA-L5-A891-01 10 37430831 37430831 T G ANKRD30A Missense_Mutation p.S280A 0.08 tolerated(0.13) benign(0.013) TCGA-L5-A891-01 10 48389059 48389059 G T RBP3 Missense_Mutation p.L607M 0.29 deleterious(0.04) possibly_damaging(0.805) TCGA-L5-A891-01 10 62149194 62149194 G A ANK3 Missense_Mutation p.R35W 0.22 probably_damaging(0.945) TCGA-L5-A891-01 10 7423773 7423773 C A SFMBT2 Missense_Mutation p.D30Y 0.16 deleterious(0) benign(0.225) TCGA-L5-A891-01 10 81056113 81056113 G A ZMIZ1 Intron 0.09 TCGA-L5-A891-01 11 103025285 103025285 G T DYNC2H1 Missense_Mutation p.E1136D 0.37 benign(0.026) TCGA-L5-A891-01 11 119169165 119169165 C G CBL Silent p.A783A 0.54 TCGA-L5-A891-01 11 1272259 1272259 G A MUC5B Missense_Mutation p.A4717T 0.39 unknown(0) TCGA-L5-A891-01 11 1278475 1278475 G A MUC5B Missense_Mutation p.V5415M 0.31 unknown(0) TCGA-L5-A891-01 11 30032617 30032617 C A KCNA4 Missense_Mutation p.G537C 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 11 33566864 33566864 A T KIAA1549L Missense_Mutation p.T812S 0.10 tolerated(0.07) benign(0.031) TCGA-L5-A891-01 11 5142749 5142749 C G OR52A4 RNA 0.21 TCGA-L5-A891-01 11 55563449 55563449 C T OR5D14 Nonsense_Mutation p.Q140* 0.45 TCGA-L5-A891-01 11 56086212 56086212 C T OR8K3 Silent p.L144L 0.24 TCGA-L5-A891-01 11 60609977 60609977 G A CCDC86 Missense_Mutation p.C127Y 0.50 tolerated(0.87) benign(0.002) TCGA-L5-A891-01 11 64664010 64664010 C T ATG2A Missense_Mutation p.R1784Q 0.26 deleterious(0) probably_damaging(0.992) TCGA-L5-A891-01 11 65266463 65266463 G A MALAT1 RNA 0.07 TCGA-L5-A891-01 11 65396125 65396125 C T PCNXL3 Silent p.I1254I 0.46 TCGA-L5-A891-01 11 65983997 65983999 CTC - PACS1 In_Frame_Del p.P272del 0.23 TCGA-L5-A891-01 11 67939153 67939153 A T SUV420H1 Nonsense_Mutation p.L226* 0.52 TCGA-L5-A891-01 11 7111237 7111237 C T RBMXL2 Missense_Mutation p.R296W 0.61 deleterious(0.02) benign(0.016) TCGA-L5-A891-01 12 101504298 101504298 T C ANO4 Missense_Mutation p.W721R 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 12 110252435 110252435 C T TRPV4 Missense_Mutation p.R56H 0.52 deleterious_low_confidence(0.03) possibly_damaging(0.508) TCGA-L5-A891-01 12 119595880 119595880 G C SRRM4 3'UTR 0.21 TCGA-L5-A891-01 12 121891050 121891050 G A KDM2B Missense_Mutation p.T611M 0.11 deleterious(0) probably_damaging(0.977) TCGA-L5-A891-01 12 122995710 122995710 C G RSRC2 Missense_Mutation p.E251Q 0.12 deleterious(0.01) unknown(0) TCGA-L5-A891-01 12 129442176 129442176 T G GLT1D1 Missense_Mutation p.F209L 0.21 deleterious(0) benign(0.294) TCGA-L5-A891-01 12 3149639 3149639 G A TEAD4 Missense_Mutation p.E434K 0.53 deleterious_low_confidence(0) benign(0.119) TCGA-L5-A891-01 12 53918508 53918508 C T ATF7 Missense_Mutation p.R322Q 0.42 deleterious(0) probably_damaging(0.988) TCGA-L5-A891-01 12 59270234 59270234 G A LRIG3 Silent p.D896D 0.51 TCGA-L5-A891-01 12 81101966 81101966 G A MYF6 Silent p.K156K 0.41 TCGA-L5-A891-01 12 8212595 8212595 G T C3AR1 Missense_Mutation p.H63N 0.41 tolerated(0.28) benign(0.309) TCGA-L5-A891-01 12 90013951 90013951 G A ATP2B1 Missense_Mutation p.L552F 0.42 tolerated(1) benign(0.004) TCGA-L5-A891-01 13 28623578 28623578 A G FLT3 Missense_Mutation p.Y327H 0.86 tolerated(0.58) benign(0.006) TCGA-L5-A891-01 13 30088667 30088667 C A SLC7A1 Missense_Mutation p.D614Y 0.16 deleterious(0.02) benign(0.003) TCGA-L5-A891-01 13 88331556 88331556 A - SLITRK5 3'UTR 0.09 TCGA-L5-A891-01 14 20404162 20404162 A G OR4K1 Missense_Mutation p.M113V 0.68 tolerated(1) benign(0) TCGA-L5-A891-01 14 26916814 26916814 G T NOVA1 3'UTR 0.40 TCGA-L5-A891-01 14 26916815 26916815 T G NOVA1 3'UTR 0.44 TCGA-L5-A891-01 14 26916829 26916829 A C NOVA1 3'UTR 0.38 TCGA-L5-A891-01 14 57960297 57960297 G C C14orf105 Nonsense_Mutation p.S46* 0.20 TCGA-L5-A891-01 14 69522074 69522074 G A DCAF5 Silent p.I443I 0.79 TCGA-L5-A891-01 15 43525456 43525456 T A TGM5 Missense_Mutation p.N699I 0.19 deleterious(0.05) probably_damaging(1) TCGA-L5-A891-01 15 44087925 44087925 G A SERINC4 Silent p.L384L 0.44 TCGA-L5-A891-01 15 49281065 49281065 A G SECISBP2L 3'UTR 0.16 TCGA-L5-A891-01 15 63111820 63111820 G T TLN2 Nonsense_Mutation p.G2293* 0.16 TCGA-L5-A891-01 15 69548309 69548309 G C GLCE Missense_Mutation p.R55T 0.11 tolerated_low_confidence(0.44) benign(0.047) TCGA-L5-A891-01 15 75798200 75798224 CGAAGGGATCTGGGTGGCCGTTCAC - PTPN9 Frame_Shift_Del p.V254Mfs*12 0.15 TCGA-L5-A891-01 15 83437778 83437778 A T FSD2 Silent p.P469P 0.13 TCGA-L5-A891-01 15 99675526 99675526 C G SYNM 3'UTR 0.34 TCGA-L5-A891-01 16 2110683 2110683 C G TSC2 Missense_Mutation p.P330A 0.29 tolerated(0.74) benign(0.001) TCGA-L5-A891-01 16 29708754 29708754 C T QPRT 3'UTR 0.24 TCGA-L5-A891-01 16 337148 337169 CAGGAGCCACCCCCTTGGGTAC - PDIA2 3'UTR 0.65 TCGA-L5-A891-01 16 49671717 49671717 G A ZNF423 Missense_Mutation p.S449F 0.46 tolerated(0.06) benign(0.212) TCGA-L5-A891-01 16 68279250 68279250 C - PLA2G15 5'UTR 0.26 TCGA-L5-A891-01 16 74516995 74516995 T C GLG1 Silent p.L533L 0.73 TCGA-L5-A891-01 16 75149180 75149180 C T LDHD Silent p.L81L 0.29 TCGA-L5-A891-01 16 779072 779072 C T HAGHL Missense_Mutation p.P222S 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 16 839599 839599 C T CHTF18 Missense_Mutation p.R164C 0.15 deleterious(0.03) benign(0.051) TCGA-L5-A891-01 17 21476993 21476993 C T AC138710.1 5'Flank 0.62 TCGA-L5-A891-01 17 27065181 27065181 C T NEK8 Silent p.F380F 0.15 TCGA-L5-A891-01 17 27065759 27065759 C T NEK8 Silent p.I431I 0.15 TCGA-L5-A891-01 17 27822698 27822698 C T TAOK1 Nonsense_Mutation p.Q318* 0.28 TCGA-L5-A891-01 17 38508238 38508238 G A RARA Silent p.P182P 0.11 TCGA-L5-A891-01 17 38798602 38798602 T A SMARCE1 Intron 0.13 TCGA-L5-A891-01 17 40995262 40995262 C T PSME3 3'UTR 0.22 TCGA-L5-A891-01 17 45788667 45788667 C A TBKBP1 3'UTR 0.72 TCGA-L5-A891-01 17 57917276 57917276 G C VMP1 3'UTR 0.38 TCGA-L5-A891-01 17 61621399 61621399 T G KCNH6 Missense_Mutation p.F754V 0.17 tolerated(0.58) benign(0.001) TCGA-L5-A891-01 17 71389755 71389755 C T SDK2 Missense_Mutation p.R1281H 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.86 TCGA-L5-A891-01 17 78082180 78082180 C T GAA Silent p.S349S 0.14 TCGA-L5-A891-01 17 7976505 7976505 C T ALOX12B Silent p.L629L 0.37 TCGA-L5-A891-01 18 6912232 6912232 G C ARHGAP28 3'UTR 0.33 TCGA-L5-A891-01 19 12757488 12757488 G A MAN2B1 Silent p.P994P 0.36 TCGA-L5-A891-01 19 17534606 17534606 C T MVB12A Missense_Mutation p.S213L 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A891-01 19 17844002 17844002 G A MAP1S Missense_Mutation p.G930E 0.14 deleterious(0.05) possibly_damaging(0.9) TCGA-L5-A891-01 19 18366121 18366122 - GCG PDE4C 5'UTR 0.31 TCGA-L5-A891-01 19 2038099 2038100 - C MKNK2 3'UTR 0.24 TCGA-L5-A891-01 19 21132093 21132093 A G ZNF85 Missense_Mutation p.Y258C 0.09 deleterious(0.03) possibly_damaging(0.56) TCGA-L5-A891-01 19 31040156 31040156 G A ZNF536 Silent p.Q1210Q 0.38 TCGA-L5-A891-01 19 31768920 31768920 A G TSHZ3 Silent p.S593S 0.22 TCGA-L5-A891-01 19 36109508 36109508 G A HAUS5 Missense_Mutation p.R308Q 0.12 tolerated(0.26) probably_damaging(1) TCGA-L5-A891-01 19 36205532 36205532 T C ZBTB32 Missense_Mutation p.S2P 0.19 tolerated_low_confidence(1) benign(0) TCGA-L5-A891-01 19 36510260 36510260 G A CLIP3 Intron 0.82 TCGA-L5-A891-01 19 3653585 3653585 G A PIP5K1C Silent p.N208N 0.60 TCGA-L5-A891-01 19 37464564 37464564 C T ZNF568 5'UTR 0.24 TCGA-L5-A891-01 19 38039848 38039848 C T ZNF540 5'Flank 0.86 TCGA-L5-A891-01 19 42510094 42510094 G A GRIK5 Missense_Mutation p.R682W 0.85 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 19 43922138 43922138 G T TEX101 Missense_Mutation p.G185V 0.24 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 19 4847866 4847866 G A PLIN3 Missense_Mutation p.A224V 0.12 tolerated(0.18) benign(0.432) TCGA-L5-A891-01 19 48734143 48734143 G C CARD8 Missense_Mutation p.D221E 0.33 tolerated(0.62) benign(0.439) TCGA-L5-A891-01 19 51323186 51323186 C T KLK1 Missense_Mutation p.G201E 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-L5-A891-01 19 51671595 51671595 C T CTD-3187F8.14 Intron 0.18 TCGA-L5-A891-01 19 56410155 56410155 G A NLRP13 Missense_Mutation p.R980C 0.54 tolerated(1) benign(0) TCGA-L5-A891-01 19 58549514 58549514 C T ZSCAN1 Nonsense_Mutation p.R104* 0.15 TCGA-L5-A891-01 19 603595 603595 C T HCN2 Silent p.I228I 0.88 TCGA-L5-A891-01 19 6750420 6750420 G A TRIP10 Missense_Mutation p.A449T 0.40 tolerated(0.61) benign(0.003) TCGA-L5-A891-01 1 109643014 109643014 G A TMEM167B 3'Flank 0.10 TCGA-L5-A891-01 1 111823143 111823143 A G CHIAP2 Intron 0.28 TCGA-L5-A891-01 1 152058266 152058266 C A TCHHL1 Missense_Mutation p.G631V 0.24 tolerated(0.12) benign(0.006) TCGA-L5-A891-01 1 152648708 152648708 C G LCE2C Missense_Mutation p.L73V 0.11 deleterious_low_confidence(0.04) unknown(0) TCGA-L5-A891-01 1 156646855 156646855 C T NES Missense_Mutation p.D68N 0.44 deleterious(0) probably_damaging(0.981) TCGA-L5-A891-01 1 157490829 157490829 C T FCRL5 Silent p.E831E 0.09 TCGA-L5-A891-01 1 157737413 157737413 C T FCRL2 Intron 0.15 TCGA-L5-A891-01 1 158533368 158533368 G C OR6P1 Silent p.V9V 0.06 TCGA-L5-A891-01 1 160163632 160163632 C A CASQ1 Missense_Mutation p.L154I 0.29 deleterious(0.02) benign(0.437) TCGA-L5-A891-01 1 160651063 160651063 T C CD48 Missense_Mutation p.Y194C 0.50 deleterious(0) probably_damaging(0.999) TCGA-L5-A891-01 1 161967645 161967645 C T OLFML2B Missense_Mutation p.E482K 0.32 tolerated(0.45) benign(0.052) TCGA-L5-A891-01 1 162749971 162749971 G A DDR2 Missense_Mutation p.D835N 0.12 tolerated(0.53) benign(0.075) TCGA-L5-A891-01 1 177911145 177911145 C A SEC16B Missense_Mutation p.A638S 0.28 deleterious(0) probably_damaging(0.986) TCGA-L5-A891-01 1 180151330 180151330 C G QSOX1 Missense_Mutation p.H210D 0.28 deleterious(0.02) benign(0.147) TCGA-L5-A891-01 1 186370509 186370509 G A OCLM 3'UTR 0.50 TCGA-L5-A891-01 1 19180780 19180780 A G TAS1R2 Missense_Mutation p.V395A 0.08 deleterious(0.04) probably_damaging(0.99) TCGA-L5-A891-01 1 197316481 197316481 A T CRB1 Missense_Mutation p.N287I 0.17 tolerated(0.13) benign(0.04) TCGA-L5-A891-01 1 212274368 212274368 G A DTL Missense_Mutation p.S679N 0.23 tolerated(0.07) benign(0.047) TCGA-L5-A891-01 1 215931997 215931997 G T USH2A Missense_Mutation p.P3777T 0.20 possibly_damaging(0.597) TCGA-L5-A891-01 1 245848714 245848714 C T KIF26B Missense_Mutation p.S810F 0.09 deleterious(0) unknown(0) TCGA-L5-A891-01 1 247588786 247588786 C A NLRP3 Missense_Mutation p.L681M 0.49 tolerated(0.05) probably_damaging(0.999) TCGA-L5-A891-01 1 25170215 25170215 G A CLIC4 3'UTR 0.24 TCGA-L5-A891-01 1 32052629 32052629 G A TINAGL1 3'UTR 0.15 TCGA-L5-A891-01 1 40129067 40129067 C T NT5C1A Missense_Mutation p.S158N 0.19 tolerated(0.08) possibly_damaging(0.708) TCGA-L5-A891-01 1 59002262 59002262 G C OMA1 Missense_Mutation p.P218A 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 1 6111591 6111591 G A KCNAB2 5'UTR 0.38 TCGA-L5-A891-01 1 6680031 6680031 A G PHF13 Missense_Mutation p.S104G 0.12 tolerated(0.41) benign(0.004) TCGA-L5-A891-01 1 67787430 67787430 C G IL12RB2 Missense_Mutation p.D74E 0.08 tolerated(0.16) benign(0.158) TCGA-L5-A891-01 1 74808621 74808621 G C FPGT-TNNI3K Missense_Mutation p.E374Q 0.40 tolerated(0.35) possibly_damaging(0.698) TCGA-L5-A891-01 1 78325008 78325008 G A FAM73A Missense_Mutation p.M375I 0.08 tolerated(0.07) benign(0.01) TCGA-L5-A891-01 1 9658561 9658561 A C TMEM201 Missense_Mutation p.K162Q 0.23 deleterious(0.03) probably_damaging(1) TCGA-L5-A891-01 1 9778916 9778916 C T PIK3CD Silent p.Y395Y 0.06 TCGA-L5-A891-01 20 2411096 2411096 G C TGM6 Missense_Mutation p.K561N 0.17 deleterious(0.03) benign(0.169) TCGA-L5-A891-01 20 30432120 30432120 C T FOXS1 3'UTR 0.07 TCGA-L5-A891-01 20 32245619 32245619 C T NECAB3 3'UTR 0.11 TCGA-L5-A891-01 20 4705275 4705275 G A PRND Silent p.T26T 0.14 TCGA-L5-A891-01 20 49621054 49621054 C T KCNG1 Missense_Mutation p.R355H 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 20 52773967 52773967 C T CYP24A1 Missense_Mutation p.R465H 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 20 57767371 57767371 G A ZNF831 Missense_Mutation p.G433R 0.14 deleterious(0.01) possibly_damaging(0.572) TCGA-L5-A891-01 20 61511724 61511724 C T DIDO1 Missense_Mutation p.E1862K 0.21 benign(0.439) TCGA-L5-A891-01 20 61588799 61588799 G T SLC17A9 Silent p.G88G 0.50 TCGA-L5-A891-01 20 61588815 61588815 C G SLC17A9 Missense_Mutation p.L94V 0.52 tolerated(0.18) benign(0.077) TCGA-L5-A891-01 22 17073292 17073292 C A CCT8L2 Missense_Mutation p.C50F 0.43 deleterious(0) probably_damaging(0.996) TCGA-L5-A891-01 22 29168735 29168735 G A CCDC117 5'UTR 0.08 TCGA-L5-A891-01 22 45279122 45279122 G T PHF21B Missense_Mutation p.D480E 0.40 tolerated(0.85) benign(0.008) TCGA-L5-A891-01 22 50192241 50192241 C T BRD1 Missense_Mutation p.A584T 0.12 deleterious(0.04) possibly_damaging(0.777) TCGA-L5-A891-01 2 120388409 120388409 T G PCDP1 Missense_Mutation p.S636A 0.20 tolerated(0.08) benign(0.059) TCGA-L5-A891-01 2 1271152 1271152 G T SNTG2 Missense_Mutation p.D365Y 0.29 deleterious(0.02) probably_damaging(0.94) TCGA-L5-A891-01 2 131807461 131807461 G C FAM168B 3'UTR 0.44 TCGA-L5-A891-01 2 157186128 157186128 G - NR4A2 Frame_Shift_Del p.Q191Rfs*12 0.22 TCGA-L5-A891-01 2 160242961 160242961 A C BAZ2B Missense_Mutation p.L1125W 0.30 probably_damaging(1) TCGA-L5-A891-01 2 167056026 167056026 A C SCN9A Missense_Mutation p.L1697R 0.11 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 2 179418692 179418692 G A TTN Nonsense_Mutation p.Q29716* 0.14 TCGA-L5-A891-01 2 179433476 179433476 C T TTN Missense_Mutation p.V25795I 0.23 TCGA-L5-A891-01 2 198650819 198650819 T A BOLL 5'UTR 0.18 TCGA-L5-A891-01 2 208618759 208618759 G A CCNYL1 3'UTR 0.11 TCGA-L5-A891-01 2 210714180 210714180 C A UNC80 Missense_Mutation p.H1156N 0.29 benign(0.004) TCGA-L5-A891-01 2 235405123 235405123 G A ARL4C Silent p.N36N 0.27 TCGA-L5-A891-01 2 48982684 48982684 G A LHCGR Missense_Mutation p.R43C 0.15 deleterious(0) possibly_damaging(0.518) TCGA-L5-A891-01 3 127788479 127788479 G A SEC61A1 Missense_Mutation p.G469S 0.22 tolerated(0.08) benign(0.086) TCGA-L5-A891-01 3 129284760 129284760 T A PLXND1 Missense_Mutation p.E1431V 0.11 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 3 12949999 12949999 C T IQSEC1 Missense_Mutation p.V883M 0.17 tolerated(1) benign(0.001) TCGA-L5-A891-01 3 1415749 1415749 A T CNTN6 Missense_Mutation p.K696I 0.29 deleterious(0) possibly_damaging(0.797) TCGA-L5-A891-01 3 141896352 141896352 C - GK5 Frame_Shift_Del p.C372Ffs*13 0.10 TCGA-L5-A891-01 3 164059156 164059156 C A MIR720 RNA 0.23 TCGA-L5-A891-01 3 172365675 172365675 C - NCEH1 Frame_Shift_Del p.S155Mfs*24 0.43 TCGA-L5-A891-01 3 185797825 185797825 G A ETV5 Missense_Mutation p.T144I 0.14 tolerated(0.38) benign(0.038) TCGA-L5-A891-01 3 27761677 27761677 C T EOMES Missense_Mutation p.D341N 0.42 deleterious(0) probably_damaging(0.991) TCGA-L5-A891-01 3 36897779 36897779 A G TRANK1 Missense_Mutation p.I1101T 0.48 tolerated(0.91) benign(0.001) TCGA-L5-A891-01 3 37785459 37785459 C T ITGA9 Silent p.D789D 0.11 TCGA-L5-A891-01 3 44540815 44540815 T G ZNF852 Missense_Mutation p.H485P 0.53 deleterious(0) probably_damaging(1) TCGA-L5-A891-01 3 46480843 46480843 C T LTF Missense_Mutation p.V618M 0.32 deleterious(0) probably_damaging(0.997) TCGA-L5-A891-01 3 49924846 49924848 CTG AA MST1R Frame_Shift_Del p.T1367Pfs*5 0.15 TCGA-L5-A891-01 3 88101871 88101871 T A CGGBP1 3'UTR 0.15 TCGA-L5-A891-01 4 118006217 118006217 G C TRAM1L1 Missense_Mutation p.F111L 0.75 tolerated(1) benign(0.02) TCGA-L5-A891-01 4 13339813 13339813 G C HSP90AB2P RNA 0.14 TCGA-L5-A891-01 4 156138044 156138044 C G NPY2R 3'UTR 0.28 TCGA-L5-A891-01 4 165691579 165691579 G C RP11-294O2.2 RNA 0.14 TCGA-L5-A891-01 4 165880024 165880024 A T FAM218A 3'UTR 0.13 TCGA-L5-A891-01 4 174448437 174448437 G C HAND2 Silent p.L215L 0.29 TCGA-L5-A891-01 4 177037078 177037078 C A WDR17 Silent p.I109I 0.15 TCGA-L5-A891-01 4 52861277 52861277 C T LRRC66 Silent p.Q637Q 0.14 TCGA-L5-A891-01 4 7968685 7968685 C G ABLIM2 3'UTR 0.25 TCGA-L5-A891-01 5 157218818 157218818 C G CLINT1 Missense_Mutation p.D425H 0.38 deleterious(0) possibly_damaging(0.826) TCGA-L5-A891-01 5 15928392 15928392 C T FBXL7 Missense_Mutation p.T174I 0.22 tolerated(0.57) probably_damaging(0.981) TCGA-L5-A891-01 5 32058012 32058012 C T PDZD2 Missense_Mutation p.T668M 0.39 deleterious(0.01) probably_damaging(1) TCGA-L5-A891-01 5 45262384 45262384 G A HCN1 Missense_Mutation p.T771M 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-L5-A891-01 6 119243235 119243235 A T MCM9 Missense_Mutation p.V213D 0.38 deleterious(0) possibly_damaging(0.883) TCGA-L5-A891-01 6 134305574 134305574 A G TBPL1 Missense_Mutation p.I115V 0.09 tolerated(0.07) benign(0.433) TCGA-L5-A891-01 6 150052823 150052823 C T NUP43 Missense_Mutation p.C280Y 0.17 deleterious(0) probably_damaging(0.999) TCGA-L5-A891-01 6 158517826 158517826 A C SYNJ2 3'UTR 0.16 TCGA-L5-A891-01 6 158902309 158902309 G A TULP4 Missense_Mutation p.D492N 0.18 deleterious(0.05) probably_damaging(0.995) TCGA-L5-A891-01 6 25137932 25137932 T C CMAHP RNA 0.58 TCGA-L5-A891-01 6 25777055 25777055 C T SLC17A4 Missense_Mutation p.S379F 0.14 deleterious(0) probably_damaging(0.963) TCGA-L5-A891-01 6 32797731 32797731 C T TAP2 Missense_Mutation p.E591K 0.13 tolerated(0.19) benign(0.06) TCGA-L5-A891-01 6 44254036 44254036 T C TCTE1 Missense_Mutation p.T171A 0.13 tolerated(0.1) benign(0.027) TCGA-L5-A891-01 6 56376192 56376192 G C DST Missense_Mutation p.R3572G 0.10 probably_damaging(0.999) TCGA-L5-A891-01 6 66205285 66205285 C T EYS Missense_Mutation p.V7I 0.67 tolerated_low_confidence(0.92) benign(0) TCGA-L5-A891-01 6 7289604 7289604 C G SSR1 3'UTR 0.27 TCGA-L5-A891-01 6 74513012 74513012 C G CD109 Missense_Mutation p.S983C 0.20 deleterious(0) probably_damaging(0.996) TCGA-L5-A891-01 6 90392997 90392997 G A MDN1 Missense_Mutation p.R3986W 0.52 benign(0.017) TCGA-L5-A891-01 6 90638598 90638598 A T BACH2 3'UTR 0.06 TCGA-L5-A891-01 7 106801842 106801842 T C PRKAR2B 3'UTR 0.41 TCGA-L5-A891-01 7 128845112 128845112 C A SMO Missense_Mutation p.N202K 0.16 tolerated(0.13) benign(0.096) TCGA-L5-A891-01 7 135315184 135315184 G C NUP205 Silent p.L1675L 0.08 TCGA-L5-A891-01 7 142562098 142562098 T C EPHB6 Silent p.A180A 0.29 TCGA-L5-A891-01 7 16737803 16737803 T C BZW2 Missense_Mutation p.F367S 0.19 deleterious(0) probably_damaging(0.993) TCGA-L5-A891-01 7 5541461 5541461 G A FBXL18 Missense_Mutation p.R147C 0.46 deleterious(0.05) benign(0.07) TCGA-L5-A891-01 7 72849721 72849721 G A FZD9 Missense_Mutation p.V462I 0.42 deleterious(0.02) benign(0.072) TCGA-L5-A891-01 7 99999532 99999532 T C ZCWPW1 Missense_Mutation p.N535S 0.20 tolerated(0.09) benign(0.437) TCGA-L5-A891-01 8 124268118 124268118 C T ZHX1 Silent p.E23E 0.20 TCGA-L5-A891-01 8 126059506 126059506 T A KIAA0196 Missense_Mutation p.E816V 0.09 tolerated(0.24) benign(0.043) TCGA-L5-A891-01 8 133920543 133920543 C T TG Silent p.F1320F 0.10 TCGA-L5-A891-01 8 2054110 2054110 C T MYOM2 Missense_Mutation p.A938V 0.50 tolerated(0.21) benign(0.081) TCGA-L5-A891-01 8 22547685 22547685 C T EGR3 3'UTR 0.33 TCGA-L5-A891-01 8 30724896 30724896 G A TEX15 RNA 0.48 TCGA-L5-A891-01 8 61778111 61778111 T C CHD7 Silent p.N2871N 0.21 TCGA-L5-A891-01 8 70585409 70585409 C T SLCO5A1 Missense_Mutation p.V748I 0.24 tolerated(0.24) benign(0.011) TCGA-L5-A891-01 8 94746686 94746686 G A RBM12B Silent p.F651F 0.13 TCGA-L5-A891-01 8 95186122 95186122 G A CDH17 Missense_Mutation p.S229F 0.24 tolerated(0.08) possibly_damaging(0.481) TCGA-L5-A891-01 8 97154705 97154705 A T GDF6 3'UTR 0.45 TCGA-L5-A891-01 9 119739005 119739005 G A ASTN2 Missense_Mutation p.R500C 0.15 deleterious(0) unknown(0) TCGA-L5-A891-01 9 128724437 128724437 A T PBX3 Missense_Mutation p.S356C 0.13 deleterious(0.01) possibly_damaging(0.572) TCGA-L5-A891-01 9 131339485 131339485 C G SPTAN1 Missense_Mutation p.A288G 0.10 tolerated(0.13) benign(0.396) TCGA-L5-A891-01 9 132400455 132400455 C A ASB6 Missense_Mutation p.A294S 0.50 tolerated(0.3) benign(0.101) TCGA-L5-A891-01 9 18892502 18892502 G A ADAMTSL1 Missense_Mutation p.D1587N 0.33 tolerated(0.1) possibly_damaging(0.456) TCGA-L5-A891-01 9 69200466 69200466 A T FOXD4L6 Missense_Mutation p.F383I 0.29 deleterious_low_confidence(0.03) benign(0) TCGA-L5-A891-01 9 71396865 71396865 A G FAM122A 3'UTR 0.25 TCGA-L5-A891-01 9 8500925 8500925 C G PTPRD Missense_Mutation p.D653H 0.09 deleterious(0.02) unknown(0) TCGA-L5-A891-01 9 99157146 99157147 CG - ZNF367 Frame_Shift_Del p.R217Sfs*81 0.40 TCGA-L5-A891-01 X 100088347 100088347 C G CSTF2 Silent p.A462A 0.41 TCGA-L5-A891-01 X 108779023 108779023 C T NXT2 5'UTR 0.18 TCGA-L5-A891-01 X 153631069 153631069 A G DNASE1L1 Silent p.P296P 0.05 TCGA-L5-A891-01 X 32536193 32536193 A G DMD Silent p.L742L 0.24 TCGA-L5-A891-01 X 32536234 32536234 A G DMD Missense_Mutation p.I728T 0.27 benign(0.021) TCGA-L5-A891-01 X 34646183 34646183 G A TMEM47 3'UTR 0.32 TCGA-L5-A891-01 X 41007638 41007638 C T USP9X Missense_Mutation p.A479V 0.46 deleterious(0) possibly_damaging(0.887) TCGA-L5-A891-01 X 43587477 43587477 C G MAOA Missense_Mutation p.H187Q 0.52 deleterious(0.02) benign(0.138) TCGA-L5-A891-01 X 47041606 47041606 G T RBM10 Nonsense_Mutation p.E611* 0.84 TCGA-L5-A891-01 X 57621895 57621895 G A ZXDB 3'UTR 0.10 TCGA-L5-A891-01 X 67945440 67945440 G A STARD8 3'UTR 0.07 TCGA-L5-A891-01 X 73963510 73963510 G C KIAA2022 Nonsense_Mutation p.Y294* 0.14 TCGA-L5-A891-01 X 84528204 84528204 T G ZNF711 3'UTR 0.08 TCGA-L5-A891-01 X 89177107 89177107 C T TGIF2LX Missense_Mutation p.P8L 0.85 deleterious_low_confidence(0.03) benign(0.027) TCGA-L5-A893-01 10 118354277 118354277 C T PNLIPRP1 Silent p.C122C 0.09 TCGA-L5-A893-01 10 134165145 134165145 G A LRRC27 Missense_Mutation p.D321N 0.09 tolerated(0.46) benign(0.001) TCGA-L5-A893-01 10 21435419 21435419 T G C10orf113 Silent p.R7R 0.10 TCGA-L5-A893-01 10 43292443 43292443 C A BMS1 Missense_Mutation p.A584D 0.26 tolerated(0.08) benign(0.411) TCGA-L5-A893-01 10 82279032 82279032 C T TSPAN14 3'UTR 0.29 TCGA-L5-A893-01 11 116744228 116744228 C T SIK3 Missense_Mutation p.R511Q 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.686) TCGA-L5-A893-01 11 134118702 134118702 C T THYN1 Splice_Site p.X211_splice 0.18 TCGA-L5-A893-01 11 1618691 1618691 A G KRTAP5-2 3'UTR 0.15 TCGA-L5-A893-01 11 21596747 21596747 C T NELL1 3'UTR 0.05 TCGA-L5-A893-01 11 34194800 34194800 G A ABTB2 Silent p.Y433Y 0.23 TCGA-L5-A893-01 11 36598636 36598636 T G RAG1 3'UTR 0.11 TCGA-L5-A893-01 11 4944691 4944691 G C OR51G1 Missense_Mutation p.I293M 0.08 deleterious(0.01) benign(0.08) TCGA-L5-A893-01 11 64012401 64012401 C G PPP1R14B Splice_Site p.X125_splice 0.07 TCGA-L5-A893-01 11 6642591 6642591 T G DCHS1 3'UTR 0.07 TCGA-L5-A893-01 12 114793733 114793733 G T TBX5 Missense_Mutation p.S387R 0.45 tolerated_low_confidence(0.08) benign(0.071) TCGA-L5-A893-01 12 114803998 114803998 G T TBX5 Missense_Mutation p.S318R 0.39 deleterious(0.01) benign(0.016) TCGA-L5-A893-01 12 20806960 20806960 A T PDE3A Missense_Mutation p.E1002V 0.31 deleterious(0) benign(0.262) TCGA-L5-A893-01 12 21325664 21325664 A G SLCO1B1 Missense_Mutation p.I55M 0.18 deleterious(0) probably_damaging(0.998) TCGA-L5-A893-01 12 21926388 21926388 G C KCNJ8 Missense_Mutation p.R55G 0.31 deleterious(0) probably_damaging(0.988) TCGA-L5-A893-01 12 22089606 22089606 C A ABCC9 Translation_Start_Site p.M1? 0.53 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-L5-A893-01 12 45444438 45444438 T C DBX2 Silent p.Q91Q 0.29 TCGA-L5-A893-01 12 6499472 6499472 G A LTBR Silent p.Q332Q 0.13 TCGA-L5-A893-01 12 7310201 7310201 G T CLSTN3 Missense_Mutation p.G882W 0.15 tolerated(0.08) possibly_damaging(0.656) TCGA-L5-A893-01 12 88586397 88586397 A T TMTC3 Nonsense_Mutation p.K575* 0.42 TCGA-L5-A893-01 12 9142277 9142277 A T KLRG1 Missense_Mutation p.T16S 0.27 tolerated(0.24) benign(0.008) TCGA-L5-A893-01 12 91539903 91539903 C G DCN Missense_Mutation p.E338Q 0.15 deleterious(0.02) benign(0.015) TCGA-L5-A893-01 13 113181339 113181339 T C TUBGCP3 Missense_Mutation p.N491S 0.05 tolerated(0.09) possibly_damaging(0.62) TCGA-L5-A893-01 13 20244445 20244445 G A MPHOSPH8 Missense_Mutation p.G800E 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A893-01 13 28834674 28834674 G T PAN3 Missense_Mutation p.D447Y 0.34 deleterious(0) probably_damaging(0.967) TCGA-L5-A893-01 13 48955538 48955538 C T RB1 Nonsense_Mutation p.R552* 0.34 TCGA-L5-A893-01 13 67800403 67800403 C G PCDH9 Missense_Mutation p.G724R 0.35 tolerated(0.36) possibly_damaging(0.904) TCGA-L5-A893-01 13 84452290 84452290 C A SLITRK1 3'UTR 0.24 TCGA-L5-A893-01 14 103932743 103932743 G T MARK3 Nonsense_Mutation p.E321* 0.20 TCGA-L5-A893-01 14 106091388 106091388 G T IGHG4 Missense_Mutation p.T169K 0.27 deleterious(0.02) benign(0.093) TCGA-L5-A893-01 14 20586552 20586553 - A OR4K17 Frame_Shift_Ins p.L332Tfs*9 0.20 TCGA-L5-A893-01 14 58048020 58048020 G A SLC35F4 Missense_Mutation p.T276M 0.15 deleterious(0) probably_damaging(0.998) TCGA-L5-A893-01 14 69926945 69926945 G A SLC39A9 3'UTR 0.31 TCGA-L5-A893-01 14 77242338 77242338 G A VASH1 Missense_Mutation p.A212T 0.07 tolerated(0.47) benign(0.021) TCGA-L5-A893-01 14 90489414 90489414 G A TDP1 Intron 0.14 TCGA-L5-A893-01 15 25336769 25336769 A G SNORD116-23 5'Flank 0.25 TCGA-L5-A893-01 15 34356456 34356456 G T CHRM5 Missense_Mutation p.R513L 0.46 deleterious(0.01) benign(0.082) TCGA-L5-A893-01 15 48548097 48548097 A C SLC12A1 Missense_Mutation p.K678Q 0.23 deleterious(0) probably_damaging(0.992) TCGA-L5-A893-01 15 50570744 50570744 C T GABPB1 3'UTR 0.09 TCGA-L5-A893-01 15 52672037 52672037 G A MYO5A Missense_Mutation p.A694V 0.17 deleterious(0) probably_damaging(0.978) TCGA-L5-A893-01 15 72643437 72643437 G A HEXA Intron 0.25 TCGA-L5-A893-01 15 79320164 79320164 G A RASGRF1 Missense_Mutation p.R434W 0.06 deleterious(0) probably_damaging(0.999) TCGA-L5-A893-01 15 89398756 89398756 A C ACAN Missense_Mutation p.E980D 0.34 tolerated(0.34) benign(0.05) TCGA-L5-A893-01 16 2891192 2891192 C T PRSS30P RNA 0.17 TCGA-L5-A893-01 16 46533886 46533886 T - ANKRD26P1 RNA 0.40 TCGA-L5-A893-01 16 76587789 76587789 T A RP11-58C22.1 Missense_Mutation p.S48T 0.24 deleterious(0) possibly_damaging(0.735) TCGA-L5-A893-01 16 772362 772362 G A FAM173A Silent p.V171V 0.08 TCGA-L5-A893-01 16 87367614 87367614 G A FBXO31 Silent p.G425G 0.32 TCGA-L5-A893-01 17 3592831 3592831 G A P2RX5 Silent p.S236S 0.57 TCGA-L5-A893-01 17 39727651 39727651 C T KRT9 Silent p.Q198Q 0.09 TCGA-L5-A893-01 17 48437951 48437951 T A XYLT2 3'UTR 0.25 TCGA-L5-A893-01 17 53241402 53241402 C A STXBP4 3'UTR 0.11 TCGA-L5-A893-01 17 56389904 56389904 C T BZRAP1 Missense_Mutation p.V760M 0.39 tolerated(0.15) benign(0.192) TCGA-L5-A893-01 17 7577556 7577557 - AGG TP53 In_Frame_Ins p.S241dup 0.42 TCGA-L5-A893-01 17 79507270 79507270 C T C17orf70 3'UTR 0.12 TCGA-L5-A893-01 18 14478052 14478052 T G CXADRP3 RNA 0.18 TCGA-L5-A893-01 18 43319149 43319149 G A SLC14A1 Missense_Mutation p.G285R 0.08 deleterious(0.01) probably_damaging(0.956) TCGA-L5-A893-01 18 61637414 61637414 T C SERPINB8 Intron 0.50 TCGA-L5-A893-01 18 6887184 6887184 A G ARHGAP28 Silent p.Q335Q 0.11 TCGA-L5-A893-01 18 70417471 70417471 G T NETO1 Missense_Mutation p.T456K 0.37 tolerated_low_confidence(0.14) benign(0.033) TCGA-L5-A893-01 18 724581 724581 G A YES1 Missense_Mutation p.P492L 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A893-01 19 11034194 11034194 C T YIPF2 Missense_Mutation p.A271T 0.19 tolerated(0.28) benign(0.012) TCGA-L5-A893-01 19 17329187 17329187 G A USE1 Missense_Mutation p.V137I 0.11 tolerated(0.29) benign(0.005) TCGA-L5-A893-01 19 22846704 22846704 A C ZNF492 Missense_Mutation p.N78T 0.09 deleterious(0.01) possibly_damaging(0.727) TCGA-L5-A893-01 19 327958 327958 G A MIER2 Missense_Mutation p.A92V 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A893-01 19 36041947 36041947 G A ATP4A Silent p.P984P 0.12 TCGA-L5-A893-01 19 36494298 36494298 G A SYNE4 Nonsense_Mutation p.R386* 0.07 TCGA-L5-A893-01 19 37310980 37310980 G T ZNF790 Missense_Mutation p.P89Q 0.26 tolerated(0.22) benign(0.005) TCGA-L5-A893-01 19 37382649 37382649 A C ZNF829 Silent p.G429G 0.08 TCGA-L5-A893-01 19 4171660 4171660 C T CREB3L3 Silent p.S360S 0.25 TCGA-L5-A893-01 19 42721106 42721106 C T DEDD2 Silent p.L18L 0.31 TCGA-L5-A893-01 19 45655400 45655400 C T NKPD1 Silent p.P765P 0.23 TCGA-L5-A893-01 19 5456047 5456047 C T ZNRF4 Missense_Mutation p.A182V 0.11 deleterious(0) probably_damaging(0.994) TCGA-L5-A893-01 19 55247473 55247473 C T KIR3DL3 Silent p.Y381Y 0.31 TCGA-L5-A893-01 19 8654153 8654153 C T ADAMTS10 Missense_Mutation p.V711I 0.08 tolerated(0.16) benign(0.049) TCGA-L5-A893-01 1 10718606 10718606 G C CASZ1 Silent p.A456A 0.06 TCGA-L5-A893-01 1 10718611 10718611 G C CASZ1 Missense_Mutation p.P455A 0.06 deleterious_low_confidence(0.02) probably_damaging(0.915) TCGA-L5-A893-01 1 111216790 111216790 G A KCNA3 Silent p.R214R 0.40 TCGA-L5-A893-01 1 146680547 146680547 C T FMO5 Missense_Mutation p.D233N 0.16 tolerated(0.06) probably_damaging(0.989) TCGA-L5-A893-01 1 147230837 147230837 G T GJA5 Silent p.G170G 0.32 TCGA-L5-A893-01 1 158297891 158297891 T A CD1B 3'UTR 0.41 TCGA-L5-A893-01 1 158576932 158576932 A C OR10Z1 Missense_Mutation p.K235T 0.30 deleterious(0.04) possibly_damaging(0.463) TCGA-L5-A893-01 1 159409959 159409959 C A OR10J1 Silent p.I137I 0.16 TCGA-L5-A893-01 1 160093091 160093091 A C ATP1A2 Missense_Mutation p.K89T 0.33 deleterious(0) probably_damaging(0.992) TCGA-L5-A893-01 1 203037645 203037645 C T PPFIA4 Silent p.Y565Y 0.15 TCGA-L5-A893-01 1 203097546 203097546 C G ADORA1 Intron 0.13 TCGA-L5-A893-01 1 203772140 203772140 C T ZC3H11A 5'UTR 0.15 TCGA-L5-A893-01 1 216373317 216373317 T G USH2A Missense_Mutation p.S1155R 0.19 benign(0.392) TCGA-L5-A893-01 1 2235375 2235375 C T SKI Silent p.A436A 0.34 TCGA-L5-A893-01 1 244780851 244780851 T G C1orf101 Silent p.S837S 0.42 TCGA-L5-A893-01 1 32042855 32042855 C T TINAGL1 Missense_Mutation p.H36Y 0.15 tolerated(0.78) benign(0.082) TCGA-L5-A893-01 1 37267539 37267539 G A GRIK3 Silent p.V891V 0.65 TCGA-L5-A893-01 1 40230327 40230327 A G BMP8B Missense_Mutation p.L279P 0.24 tolerated(0.17) benign(0.006) TCGA-L5-A893-01 1 45279453 45279453 C T BTBD19 3'UTR 0.37 TCGA-L5-A893-01 1 53370414 53370414 G A ECHDC2 Silent p.H202H 0.31 TCGA-L5-A893-01 1 55451860 55451860 G A TMEM61 Missense_Mutation p.A36T 0.10 deleterious(0) probably_damaging(0.913) TCGA-L5-A893-01 1 897049 897049 C T KLHL17 Silent p.H136H 0.33 TCGA-L5-A893-01 1 91779035 91779035 G T HFM1 Missense_Mutation p.Q1088K 0.19 tolerated(0.18) benign(0.008) TCGA-L5-A893-01 20 43384348 43384348 G A RIMS4 3'Flank 0.09 TCGA-L5-A893-01 20 55803343 55803343 A C BMP7 Missense_Mutation p.F185V 0.12 tolerated(0.24) benign(0.166) TCGA-L5-A893-01 20 61439495 61439495 G A OGFR Intron 0.39 TCGA-L5-A893-01 20 644465 644465 G C SCRT2 Missense_Mutation p.H258Q 0.09 deleterious(0) probably_damaging(1) TCGA-L5-A893-01 21 38516931 38516931 C T TTC3 Missense_Mutation p.P627S 0.31 tolerated(0.26) benign(0.298) TCGA-L5-A893-01 2 109384333 109384333 T - RANBP2 Frame_Shift_Del p.S2447Lfs*2 0.26 TCGA-L5-A893-01 2 167144975 167144975 C T SCN9A Missense_Mutation p.R429H 0.42 tolerated(0.11) benign(0.198) TCGA-L5-A893-01 2 168100467 168100467 A C XIRP2 Missense_Mutation p.E855D 0.24 benign(0.044) TCGA-L5-A893-01 2 179391940 179391940 G C TTN Silent p.T35925T 0.23 TCGA-L5-A893-01 2 179417237 179417237 T C TTN Silent p.E30130E 0.24 TCGA-L5-A893-01 2 230231593 230231593 C T DNER Missense_Mutation p.A700T 0.45 deleterious(0.01) possibly_damaging(0.791) TCGA-L5-A893-01 2 32530702 32530702 T G YIPF4 3'UTR 0.20 TCGA-L5-A893-01 2 43971091 43971091 G C PLEKHH2 Missense_Mutation p.G1173A 0.18 deleterious(0) possibly_damaging(0.495) TCGA-L5-A893-01 3 10291029 10291029 C G TATDN2 Missense_Mutation p.P49A 0.11 tolerated_low_confidence(1) benign(0.001) TCGA-L5-A893-01 3 10331825 10331825 C T GHRL Missense_Mutation p.G14S 0.43 tolerated(1) benign(0.001) TCGA-L5-A893-01 3 16419305 16419305 A C RFTN1 Missense_Mutation p.L249R 0.09 tolerated(0.34) benign(0.252) TCGA-L5-A893-01 3 171969173 171969173 C T FNDC3B Missense_Mutation p.S211F 0.10 deleterious(0.02) benign(0.052) TCGA-L5-A893-01 3 176739233 176739233 A G TBL1XR1 3'UTR 0.23 TCGA-L5-A893-01 3 194118889 194118889 C T GP5 Silent p.A41A 0.19 TCGA-L5-A893-01 3 24164007 24164007 G A THRB 3'UTR 0.10 TCGA-L5-A893-01 3 6903327 6903327 C T GRM7 Silent p.Y84Y 0.37 TCGA-L5-A893-01 4 173730571 173730571 C T GALNTL6 Missense_Mutation p.R205C 0.43 deleterious(0) probably_damaging(0.993) TCGA-L5-A893-01 4 2306473 2306473 C T ZFYVE28 Missense_Mutation p.A532T 0.11 tolerated_low_confidence(0.74) benign(0.001) TCGA-L5-A893-01 4 69083673 69083673 G A TMPRSS11BNL 5'UTR 0.31 TCGA-L5-A893-01 4 86950424 86950424 A C MAPK10 Missense_Mutation p.L393R 0.38 deleterious(0.02) benign(0.065) TCGA-L5-A893-01 5 100144286 100144286 A G ST8SIA4 3'UTR 0.16 TCGA-L5-A893-01 5 112177870 112177870 A G APC Silent p.K2193K 0.12 TCGA-L5-A893-01 5 1212593 1212593 C T SLC6A19 Silent p.T219T 0.12 TCGA-L5-A893-01 5 137761239 137761239 G A KDM3B Missense_Mutation p.R1460Q 0.19 tolerated(0.12) probably_damaging(0.924) TCGA-L5-A893-01 5 139844263 139844263 C T ANKHD1 Missense_Mutation p.H562Y 0.12 unknown(0) TCGA-L5-A893-01 5 140230270 140230270 C A PCDHA9 Silent p.G730G 0.07 TCGA-L5-A893-01 5 159833509 159833509 T G SLU7 Missense_Mutation p.K418T 0.08 deleterious(0) probably_damaging(0.995) TCGA-L5-A893-01 5 178392111 178392111 A G ZNF454 Missense_Mutation p.R236G 0.41 deleterious(0) probably_damaging(0.985) TCGA-L5-A893-01 5 33989488 33989488 A C AMACR Missense_Mutation p.F287V 0.27 deleterious(0) probably_damaging(1) TCGA-L5-A893-01 5 45260663 45260663 T G HCN1 3'UTR 0.42 TCGA-L5-A893-01 5 45260852 45260852 G T HCN1 3'UTR 0.46 TCGA-L5-A893-01 5 68737386 68737386 C T MARVELD2 Missense_Mutation p.R528C 0.17 deleterious(0) probably_damaging(0.998) TCGA-L5-A893-01 5 9042825 9042825 C T SEMA5A 3'UTR 0.17 TCGA-L5-A893-01 5 94749806 94749806 G A FAM81B Missense_Mutation p.R150Q 0.29 tolerated(1) benign(0.025) TCGA-L5-A893-01 6 105573325 105573325 A C BVES Silent p.T160T 0.40 TCGA-L5-A893-01 6 133846296 133846296 A G EYA4 Silent p.K581K 0.05 TCGA-L5-A893-01 6 160875369 160875369 G C SLC22A3 3'Flank 0.16 TCGA-L5-A893-01 6 30652231 30652231 C T PPP1R18 Missense_Mutation p.S522N 0.41 tolerated(0.19) benign(0.066) TCGA-L5-A893-01 6 31920010 31920010 T C NELFE 3'UTR 0.16 TCGA-L5-A893-01 6 32007600 32007600 G C CYP21A2 Silent p.L242L 0.42 TCGA-L5-A893-01 6 43152426 43152426 G A CUL9 Silent p.A126A 0.09 TCGA-L5-A893-01 6 610147 610147 C T EXOC2 Silent p.T231T 0.49 TCGA-L5-A893-01 6 73110270 73110270 G C RIMS1 Missense_Mutation p.E1645Q 0.07 deleterious(0) benign(0.021) TCGA-L5-A893-01 6 76385617 76385617 G C SENP6 Missense_Mutation p.D490H 0.06 deleterious(0.02) benign(0.025) TCGA-L5-A893-01 7 102246426 102246426 C T RASA4 Missense_Mutation p.G103R 0.04 tolerated(0.06) probably_damaging(0.999) TCGA-L5-A893-01 7 103002453 103002453 A G PSMC2 Missense_Mutation p.N114D 0.22 tolerated(0.16) possibly_damaging(0.505) TCGA-L5-A893-01 7 104750981 104750981 C G KMT2E Missense_Mutation p.S1301C 0.19 deleterious_low_confidence(0.04) possibly_damaging(0.7) TCGA-L5-A893-01 7 120740003 120740003 C T CPED1 Missense_Mutation p.P258L 0.23 tolerated(0.13) benign(0) TCGA-L5-A893-01 7 121741706 121741706 T G AASS Missense_Mutation p.E436A 0.06 deleterious(0.03) possibly_damaging(0.507) TCGA-L5-A893-01 7 129474372 129474372 C G UBE2H 3'UTR 0.09 TCGA-L5-A893-01 7 143088619 143088619 C T EPHA1 Silent p.T954T 0.17 TCGA-L5-A893-01 7 143826277 143826277 T C OR2A14 Silent p.I24I 0.20 TCGA-L5-A893-01 7 148987050 148987050 A T ZNF783 3'Flank 0.08 TCGA-L5-A893-01 7 151262817 151262817 A T PRKAG2 Missense_Mutation p.V463E 0.21 deleterious(0) probably_damaging(0.999) TCGA-L5-A893-01 7 23401175 23401175 A C IGF2BP3 Missense_Mutation p.S127A 0.25 tolerated(1) benign(0.004) TCGA-L5-A893-01 7 73452037 73452037 C A ELN Missense_Mutation p.A55E 0.14 unknown(0) TCGA-L5-A893-01 7 79818445 79818445 A C GNAI1 Missense_Mutation p.K67N 0.20 tolerated(0.37) benign(0.003) TCGA-L5-A893-01 7 87792457 87792457 T A ADAM22 Missense_Mutation p.L680M 0.20 deleterious(0) benign(0.239) TCGA-L5-A893-01 7 88847525 88847525 T G ZNF804B Missense_Mutation p.F55L 0.46 deleterious(0) probably_damaging(0.998) TCGA-L5-A893-01 7 98636024 98636024 T G SMURF1 Missense_Mutation p.K585Q 0.26 deleterious(0.02) possibly_damaging(0.474) TCGA-L5-A893-01 8 13425634 13425634 T G C8orf48 3'UTR 0.34 TCGA-L5-A893-01 8 142228285 142228285 C T SLC45A4 Missense_Mutation p.S434N 0.21 tolerated(0.14) benign(0.085) TCGA-L5-A893-01 8 145739026 145739026 C T RECQL4 Missense_Mutation p.R710H 0.22 deleterious(0) probably_damaging(0.986) TCGA-L5-A893-01 8 3087592 3087592 A C CSMD1 Missense_Mutation p.F1439V 0.34 possibly_damaging(0.562) TCGA-L5-A893-01 8 68658271 68658271 G T CPA6 Missense_Mutation p.L32I 0.33 tolerated(0.39) benign(0.176) TCGA-L5-A893-01 8 74692566 74692566 A G RP11-463D19.2 Intron 0.31 TCGA-L5-A893-01 8 96047735 96047736 - A NDUFAF6 Frame_Shift_Ins p.T120Nfs*8 0.26 TCGA-L5-A893-01 9 104334445 104334445 C T GRIN3A 3'UTR 0.38 TCGA-L5-A893-01 9 105765462 105765462 T C CYLC2 Missense_Mutation p.F33L 0.15 deleterious(0) probably_damaging(0.991) TCGA-L5-A893-01 9 122004469 122004469 C A BRINP1 Missense_Mutation p.M145I 0.09 deleterious(0.05) benign(0.011) TCGA-L5-A893-01 9 130167019 130167019 C T SLC2A8 Intron 0.12 TCGA-L5-A893-01 9 136536779 136536779 C T SARDH Nonsense_Mutation p.W735* 0.15 TCGA-L5-A893-01 9 137734078 137734078 A G COL5A1 Missense_Mutation p.M1816V 0.10 unknown(0) TCGA-L5-A893-01 9 21384607 21384607 C T IFNA2 3'UTR 0.18 TCGA-L5-A893-01 9 27185608 27185608 C T TEK Silent p.P436P 0.07 TCGA-L5-A893-01 9 77377747 77377747 A C TRPM6 Silent p.S1280S 0.11 TCGA-L5-A893-01 9 88247681 88247681 C T AGTPBP1 Silent p.T597T 0.37 TCGA-L5-A893-01 X 100509876 100509876 G A DRP2 Missense_Mutation p.A715T 0.12 tolerated(0.2) benign(0.252) TCGA-L5-A893-01 X 105280573 105280573 A T SERPINA7 Missense_Mutation p.F159L 0.30 tolerated(0.19) benign(0.081) TCGA-L5-A893-01 X 106039330 106039330 G C RNF128 3'UTR 0.17 TCGA-L5-A893-01 X 107170088 107170088 C A MID2 Missense_Mutation p.L665M 0.23 deleterious(0.01) probably_damaging(0.969) TCGA-L5-A893-01 X 117043737 117043737 G A KLHL13 Missense_Mutation p.T301M 0.18 deleterious(0.03) possibly_damaging(0.872) TCGA-L5-A893-01 X 117079558 117079558 A C KLHL13 Intron 0.31 TCGA-L5-A893-01 X 151283560 151283560 G A RP11-1007I13.4 RNA 0.26 TCGA-L5-A893-01 X 155234144 155234144 A C IL9R Missense_Mutation p.T165P 0.21 deleterious(0.03) probably_damaging(0.992) TCGA-L5-A893-01 X 16888207 16888207 G A RBBP7 5'Flank 0.11 TCGA-L5-A893-01 X 49069215 49069215 C T CACNA1F Missense_Mutation p.R1296H 0.14 deleterious(0) possibly_damaging(0.832) TCGA-L5-A893-01 X 49957183 49957183 T G AKAP4 Missense_Mutation p.Q727H 0.22 deleterious(0.01) probably_damaging(0.954) TCGA-L5-A893-01 X 53561025 53561025 T C HUWE1 Missense_Mutation p.K4322R 0.08 unknown(0) TCGA-L5-A893-01 X 55757975 55757975 T G RRAGB Missense_Mutation p.L186V 0.08 deleterious(0) probably_damaging(0.98) TCGA-L5-A893-01 X 64958409 64958409 C G MSN Missense_Mutation p.T425R 0.13 tolerated(0.17) benign(0.12) TCGA-L5-A893-01 X 73961054 73961054 T C KIAA2022 Missense_Mutation p.K1113R 0.21 tolerated(0.05) probably_damaging(0.992) TCGA-L5-A893-01 X 83724243 83724243 T G HDX Missense_Mutation p.K163T 0.08 deleterious(0.01) benign(0.178) TCGA-L5-A893-01 X 92964531 92964531 G A FAM133A Missense_Mutation p.R38K 0.12 deleterious_low_confidence(0.02) probably_damaging(0.977) TCGA-L5-A8NE-01 10 120914684 120914684 C T SFXN4 Missense_Mutation p.A208T 0.31 tolerated(0.33) benign(0.411) TCGA-L5-A8NE-01 10 125805569 125805569 A G CHST15 Silent p.L54L 0.34 TCGA-L5-A8NE-01 10 126682492 126682492 T C CTBP2 Silent p.L821L 0.39 TCGA-L5-A8NE-01 10 127371671 127371671 C T TEX36 5'UTR 0.37 TCGA-L5-A8NE-01 10 129350824 129350824 A C NPS Missense_Mutation p.K64T 0.40 tolerated(0.39) benign(0.027) TCGA-L5-A8NE-01 10 133107433 133107433 T G TCERG1L Silent p.R158R 0.24 TCGA-L5-A8NE-01 10 17210898 17210898 A C TRDMT1 Missense_Mutation p.F65V 0.47 deleterious(0) possibly_damaging(0.793) TCGA-L5-A8NE-01 10 20568836 20568836 C A PLXDC2 3'UTR 0.52 TCGA-L5-A8NE-01 10 42833270 42833270 A G RP11-313J2.1 RNA 0.43 TCGA-L5-A8NE-01 10 42982441 42982441 G A LINC00839 RNA 0.19 TCGA-L5-A8NE-01 10 50530604 50530604 A C C10orf71 Missense_Mutation p.N5T 0.28 deleterious(0) possibly_damaging(0.869) TCGA-L5-A8NE-01 10 63816992 63816992 A G ARID5B Silent p.E321E 0.06 TCGA-L5-A8NE-01 10 76790462 76790462 G A KAT6B Silent p.T1960T 0.40 TCGA-L5-A8NE-01 10 82036155 82036155 G A MAT1A Missense_Mutation p.R249W 0.85 deleterious(0) possibly_damaging(0.798) TCGA-L5-A8NE-01 10 96971632 96971632 T G C10orf129 Intron 0.17 TCGA-L5-A8NE-01 10 96971633 96971633 A T C10orf129 Splice_Site p.X252_splice 0.17 TCGA-L5-A8NE-01 11 106680878 106680878 T G GUCY1A2 Missense_Mutation p.Q511H 0.17 tolerated(0.13) benign(0.029) TCGA-L5-A8NE-01 11 110007466 110007466 T G ZC3H12C Missense_Mutation p.L34V 0.13 tolerated(0.06) probably_damaging(0.99) TCGA-L5-A8NE-01 11 110134916 110134916 T G RDX Missense_Mutation p.K79T 0.31 tolerated(0.07) possibly_damaging(0.874) TCGA-L5-A8NE-01 11 11362428 11362428 C T GALNT18 Missense_Mutation p.A406T 0.47 deleterious(0.01) possibly_damaging(0.737) TCGA-L5-A8NE-01 11 117158663 117158663 C T BACE1 3'UTR 0.53 TCGA-L5-A8NE-01 11 118015906 118015906 A G SCN4B Missense_Mutation p.S34P 0.66 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NE-01 11 122775942 122775942 T C C11orf63 Intron 0.22 TCGA-L5-A8NE-01 11 123813642 123813642 T A OR6T1 Nonsense_Mutation p.R302* 0.33 TCGA-L5-A8NE-01 11 125301355 125301355 G A PKNOX2 3'UTR 0.33 TCGA-L5-A8NE-01 11 26582672 26582672 T G MUC15 Missense_Mutation p.E342D 0.37 tolerated(0.48) benign(0.005) TCGA-L5-A8NE-01 11 26705342 26705342 A C SLC5A12 Missense_Mutation p.F424V 0.19 deleterious(0) benign(0.038) TCGA-L5-A8NE-01 11 31263046 31263046 A C DCDC1 Missense_Mutation p.L391R 0.15 tolerated(0.13) possibly_damaging(0.887) TCGA-L5-A8NE-01 11 4095753 4095753 G C STIM1 Missense_Mutation p.E271D 0.29 deleterious(0.04) possibly_damaging(0.525) TCGA-L5-A8NE-01 11 4471059 4471059 C A OR52K2 Missense_Mutation p.L164M 0.25 tolerated(0.13) probably_damaging(1) TCGA-L5-A8NE-01 11 5153418 5153418 A T OR52A5 Missense_Mutation p.L152H 0.46 deleterious(0) probably_damaging(0.951) TCGA-L5-A8NE-01 11 5290750 5290750 C T HBE1 Silent p.K83K 0.60 TCGA-L5-A8NE-01 11 56043855 56043855 A G OR5T1 Silent p.R247R 0.52 TCGA-L5-A8NE-01 11 57310453 57310453 G A SMTNL1 Missense_Mutation p.G131D 0.14 tolerated(1) benign(0.007) TCGA-L5-A8NE-01 11 64012186 64012186 T C PPP1R14B 3'UTR 0.33 TCGA-L5-A8NE-01 11 66249828 66249828 T C DPP3 Missense_Mutation p.S53P 0.50 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 11 6632477 6632477 G A TAF10 Silent p.A170A 0.44 TCGA-L5-A8NE-01 11 7847434 7847434 A C OR5P3 Missense_Mutation p.L29R 0.44 deleterious(0) benign(0.24) TCGA-L5-A8NE-01 11 8117062 8117062 G C TUB Missense_Mutation p.A194P 0.23 tolerated(0.06) possibly_damaging(0.75) TCGA-L5-A8NE-01 11 83167252 83167252 T G DLG2 3'Flank 0.38 TCGA-L5-A8NE-01 11 84245712 84245712 T G DLG2 Missense_Mutation p.E140D 0.28 tolerated_low_confidence(0.28) benign(0.006) TCGA-L5-A8NE-01 11 94113737 94113737 G A GPR83 Missense_Mutation p.R284W 0.43 deleterious(0) probably_damaging(0.977) TCGA-L5-A8NE-01 12 10170536 10170536 A C CLEC12B Intron 0.50 TCGA-L5-A8NE-01 12 10572176 10572176 A C KLRC3 Intron 0.21 TCGA-L5-A8NE-01 12 108620910 108620910 T G WSCD2 Missense_Mutation p.S316R 0.55 tolerated(0.38) benign(0.001) TCGA-L5-A8NE-01 12 109526081 109526081 G C ALKBH2 Missense_Mutation p.P239R 0.48 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 12 117604812 117604812 C T FBXO21 Missense_Mutation p.E362K 0.67 deleterious(0.01) probably_damaging(0.974) TCGA-L5-A8NE-01 12 130907016 130907016 C T RIMBP2 Missense_Mutation p.V818M 0.69 tolerated(1) benign(0.004) TCGA-L5-A8NE-01 12 15035018 15035018 A G MGP 3'UTR 0.20 TCGA-L5-A8NE-01 12 22059129 22059129 T G ABCC9 Missense_Mutation p.S517R 0.24 tolerated(0.48) benign(0.003) TCGA-L5-A8NE-01 12 22069971 22069971 G A ABCC9 Missense_Mutation p.S158F 0.20 tolerated(0.28) benign(0) TCGA-L5-A8NE-01 12 2801892 2801892 G A CACNA1C 3'Flank 0.28 TCGA-L5-A8NE-01 12 38714844 38714844 C T ALG10B Silent p.Y417Y 0.68 TCGA-L5-A8NE-01 12 4922096 4922096 T G KCNA6 3'UTR 0.42 TCGA-L5-A8NE-01 12 49483428 49483428 T C DHH 3'UTR 0.24 TCGA-L5-A8NE-01 12 5021359 5021359 A G KCNA1 Missense_Mutation p.E272G 0.27 deleterious(0.02) probably_damaging(0.938) TCGA-L5-A8NE-01 12 57106968 57106968 C T NACA Missense_Mutation p.D840N 0.42 deleterious_low_confidence(0.01) benign(0.316) TCGA-L5-A8NE-01 12 69747065 69747065 A C LYZ 3'UTR 0.06 TCGA-L5-A8NE-01 12 75884283 75884283 G C GLIPR1 Missense_Mutation p.C173S 0.64 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 12 81043443 81043443 T A PTPRQ Missense_Mutation p.F2003I 0.24 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NE-01 12 8629933 8629933 A T CLEC6A Missense_Mutation p.E168V 0.40 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 12 9312993 9312993 T C PZP Missense_Mutation p.N989S 0.37 deleterious(0) probably_damaging(0.989) TCGA-L5-A8NE-01 12 94562964 94562964 C T PLXNC1 Silent p.I366I 0.65 TCGA-L5-A8NE-01 13 112725587 112725587 G A SOX1 3'UTR 0.26 TCGA-L5-A8NE-01 13 19751617 19751617 A C TUBA3C Missense_Mutation p.F169C 0.42 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-L5-A8NE-01 13 29275093 29275093 T A SLC46A3 Missense_Mutation p.R461S 0.46 tolerated(0.1) benign(0.169) TCGA-L5-A8NE-01 13 35615243 35615243 A C NBEA Missense_Mutation p.E156D 0.32 tolerated(0.15) benign(0.39) TCGA-L5-A8NE-01 13 36429667 36429667 G A DCLK1 Intron 0.38 TCGA-L5-A8NE-01 13 37270579 37270579 C T SERTM1 3'UTR 0.29 TCGA-L5-A8NE-01 13 53624487 53624487 C A OLFM4 Missense_Mutation p.R372S 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 13 58299626 58299626 T G PCDH17 3'UTR 0.23 TCGA-L5-A8NE-01 13 61985247 61985247 T A PCDH20 3'UTR 0.21 TCGA-L5-A8NE-01 13 72147054 72147054 T C DACH1 Missense_Mutation p.N408S 0.17 benign(0.396) TCGA-L5-A8NE-01 14 19563512 19563512 A G POTEG Silent p.R342R 0.12 TCGA-L5-A8NE-01 14 22591339 22591339 A G TRAV26-1 5'UTR 0.38 TCGA-L5-A8NE-01 14 24658889 24658889 G A TM9SF1 Missense_Mutation p.A518V 0.26 deleterious(0.03) possibly_damaging(0.501) TCGA-L5-A8NE-01 14 27064693 27064693 C A NOVA1 Missense_Mutation p.G68V 0.25 deleterious(0) unknown(0) TCGA-L5-A8NE-01 14 32559920 32559920 C T ARHGAP5 Silent p.I15I 0.24 TCGA-L5-A8NE-01 14 47310778 47310778 G A MDGA2 3'UTR 0.22 TCGA-L5-A8NE-01 14 47311204 47311204 A C MDGA2 Missense_Mutation p.V1003G 0.39 tolerated_low_confidence(0.54) benign(0.001) TCGA-L5-A8NE-01 14 50116959 50116963 ATATA - POLE2 Intron 0.54 TCGA-L5-A8NE-01 14 66958769 66958769 A T LINC00238 Splice_Site 0.21 TCGA-L5-A8NE-01 14 80328983 80328983 A G NRXN3 3'Flank 0.37 TCGA-L5-A8NE-01 14 86089605 86089605 C T FLRT2 Missense_Mutation p.R583W 0.30 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NE-01 14 86092759 86092759 T C FLRT2 3'UTR 0.50 TCGA-L5-A8NE-01 14 89627283 89627283 A G FOXN3 3'UTR 0.41 TCGA-L5-A8NE-01 15 23931967 23931967 T C NDN Missense_Mutation p.K133R 0.19 tolerated(0.3) probably_damaging(0.998) TCGA-L5-A8NE-01 15 33905446 33905446 A C RYR3 Missense_Mutation p.S743R 0.14 probably_damaging(0.999) TCGA-L5-A8NE-01 15 34110876 34110876 C T RYR3 Missense_Mutation p.T3566M 0.19 benign(0.291) TCGA-L5-A8NE-01 15 48494576 48494576 A C CTXN2 3'UTR 0.43 TCGA-L5-A8NE-01 15 48495833 48495833 A C CTXN2 3'UTR 0.13 TCGA-L5-A8NE-01 15 50647428 50647428 C - GABPB1 5'Flank 0.15 TCGA-L5-A8NE-01 15 75134440 75134440 C T ULK3 Missense_Mutation p.A114T 0.50 tolerated(0.09) benign(0.124) TCGA-L5-A8NE-01 15 89401826 89401826 T A ACAN Missense_Mutation p.F2004I 0.17 tolerated(0.63) probably_damaging(0.987) TCGA-L5-A8NE-01 15 91420846 91420846 G A FURIN Splice_Site p.X223_splice 0.15 TCGA-L5-A8NE-01 15 92715120 92715120 G A RP11-152L20.3 Intron 0.19 TCGA-L5-A8NE-01 16 11861348 11861348 C T ZC3H7A Missense_Mutation p.E483K 0.11 deleterious(0.02) possibly_damaging(0.829) TCGA-L5-A8NE-01 16 12662432 12662432 C T SNX29 Silent p.S796S 0.10 TCGA-L5-A8NE-01 16 1485995 1485995 G A CCDC154 Missense_Mutation p.A536V 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 16 19873217 19873217 G A GPRC5B Missense_Mutation p.P370L 0.28 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 16 20557788 20557788 A C ACSM2B Silent p.T369T 0.27 TCGA-L5-A8NE-01 16 23200778 23200778 G A SCNN1G Missense_Mutation p.R135Q 0.32 tolerated(0.44) benign(0.167) TCGA-L5-A8NE-01 16 29680608 29680608 C T SPN 3'UTR 0.24 TCGA-L5-A8NE-01 16 3024061 3024061 G A PKMYT1 Missense_Mutation p.P417L 0.32 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 16 30376900 30376900 G A TBC1D10B Silent p.P324P 0.34 TCGA-L5-A8NE-01 16 30779758 30779758 C A RNF40 Missense_Mutation p.S629Y 0.11 deleterious(0.01) benign(0.019) TCGA-L5-A8NE-01 16 3100089 3100089 G T MMP25 Silent p.R104R 0.23 TCGA-L5-A8NE-01 16 31374554 31374554 G A ITGAX Silent p.A523A 0.31 TCGA-L5-A8NE-01 16 31391152 31391152 T C ITGAX Silent p.A981A 0.29 TCGA-L5-A8NE-01 16 31499088 31499088 T G SLC5A2 Intron 0.33 TCGA-L5-A8NE-01 16 31539954 31539954 A C AHSP Missense_Mutation p.K84T 0.24 deleterious(0) benign(0.356) TCGA-L5-A8NE-01 16 31765507 31765507 C T ZNF720 Intron 0.12 TCGA-L5-A8NE-01 16 5058463 5058463 G A SEC14L5 Nonsense_Mutation p.W538* 0.12 TCGA-L5-A8NE-01 16 57092049 57092049 C T NLRC5 Silent p.S1273S 0.55 TCGA-L5-A8NE-01 16 65022113 65022113 A C CDH11 Missense_Mutation p.F316V 0.65 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 16 65032509 65032509 A G CDH11 Missense_Mutation p.L160P 0.62 tolerated(0.37) benign(0.01) TCGA-L5-A8NE-01 16 66584128 66584129 - T TK2 5'UTR 0.36 TCGA-L5-A8NE-01 16 7760883 7760883 T A RBFOX1 3'UTR 0.37 TCGA-L5-A8NE-01 16 84217326 84217326 A T TAF1C Missense_Mutation p.L66H 0.65 deleterious(0) probably_damaging(0.986) TCGA-L5-A8NE-01 16 90162200 90162200 C T TUBB8P7 RNA 0.53 TCGA-L5-A8NE-01 17 10426981 10426981 G A MYH2 Silent p.A1768A 0.73 TCGA-L5-A8NE-01 17 36288293 36288293 A C TBC1D3F Silent p.R127R 0.16 TCGA-L5-A8NE-01 17 3629910 3629910 C A GSG2 3'UTR 0.33 TCGA-L5-A8NE-01 17 38643518 38643518 A G TNS4 Missense_Mutation p.L353P 0.26 tolerated(0.2) benign(0.014) TCGA-L5-A8NE-01 17 4439393 4439393 G C SPNS2 Missense_Mutation p.R456P 0.19 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NE-01 17 46919216 46919216 C T CALCOCO2 Silent p.I49I 0.19 TCGA-L5-A8NE-01 17 47810056 47810056 C A FAM117A Nonsense_Mutation p.E75* 0.34 TCGA-L5-A8NE-01 17 51901450 51901450 C T KIF2B Silent p.V352V 0.16 TCGA-L5-A8NE-01 17 5456834 5456834 G A NLRP1 Silent p.L800L 0.31 TCGA-L5-A8NE-01 17 56568905 56568905 C A MTMR4 3'UTR 0.43 TCGA-L5-A8NE-01 17 66528415 66528415 A C PRKAR1A 3'UTR 0.39 TCGA-L5-A8NE-01 17 77078179 77078179 C T ENGASE Intron 0.24 TCGA-L5-A8NE-01 18 24496569 24496569 T G CHST9 Missense_Mutation p.K329T 0.32 tolerated(0.34) benign(0.394) TCGA-L5-A8NE-01 18 34359759 34359759 A C FHOD3 3'UTR 0.36 TCGA-L5-A8NE-01 18 44140204 44140204 T G LOXHD1 5'Flank 0.60 TCGA-L5-A8NE-01 18 44560946 44560946 A G TCEB3B Silent p.S230S 0.72 TCGA-L5-A8NE-01 18 50912418 50912418 A G DCC Missense_Mutation p.S789G 0.31 deleterious(0.04) possibly_damaging(0.51) TCGA-L5-A8NE-01 18 5197200 5197200 G A C18orf42 5'UTR 0.88 TCGA-L5-A8NE-01 18 54426150 54426150 T C WDR7 Silent p.T938T 0.55 TCGA-L5-A8NE-01 18 55144184 55144184 T G ONECUT2 3'UTR 0.67 TCGA-L5-A8NE-01 18 56585942 56585942 C T ZNF532 Silent p.D141D 0.38 TCGA-L5-A8NE-01 18 60795367 60795367 G T BCL2 3'UTR 0.44 TCGA-L5-A8NE-01 18 61259619 61259619 A C SERPINB13 Missense_Mutation p.K88T 0.61 tolerated(0.11) benign(0.04) TCGA-L5-A8NE-01 18 74625774 74625774 A G ZNF236 Missense_Mutation p.E992G 0.62 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 19 11456054 11456054 G A TMEM205 Silent p.F46F 0.46 TCGA-L5-A8NE-01 19 1466955 1466955 G A APC2 Missense_Mutation p.A1219T 0.56 benign(0.058) TCGA-L5-A8NE-01 19 15359888 15359888 C T BRD4 Intron 0.33 TCGA-L5-A8NE-01 19 1990135 1990135 C T BTBD2 Missense_Mutation p.V286I 0.42 tolerated(0.12) benign(0.358) TCGA-L5-A8NE-01 19 22271232 22271232 A C ZNF257 Missense_Mutation p.K227T 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-L5-A8NE-01 19 22363724 22363724 G T ZNF676 Silent p.V265V 0.37 TCGA-L5-A8NE-01 19 22782991 22782991 C G AC011467.1 5'Flank 0.42 TCGA-L5-A8NE-01 19 23927796 23927796 T G ZNF681 Missense_Mutation p.T186P 0.31 deleterious(0.01) probably_damaging(0.961) TCGA-L5-A8NE-01 19 30936442 30936442 A C ZNF536 Missense_Mutation p.K658T 0.18 deleterious(0) benign(0.274) TCGA-L5-A8NE-01 19 34292163 34292163 A C KCTD15 Missense_Mutation p.K53T 0.24 deleterious(0.02) probably_damaging(0.954) TCGA-L5-A8NE-01 19 3600441 3600441 G T TBXA2R Silent p.L64L 0.25 TCGA-L5-A8NE-01 19 37488344 37488344 T G ZNF568 Missense_Mutation p.V520G 0.45 deleterious(0) probably_damaging(0.968) TCGA-L5-A8NE-01 19 37903852 37903852 T C ZNF569 Missense_Mutation p.R570G 0.47 deleterious(0.04) possibly_damaging(0.663) TCGA-L5-A8NE-01 19 38380298 38380298 T G WDR87 Missense_Mutation p.K1299T 0.39 benign(0.155) TCGA-L5-A8NE-01 19 41302616 41302616 A G RAB4B 3'Flank 0.31 TCGA-L5-A8NE-01 19 44351115 44351115 C A ZNF283 Missense_Mutation p.T121N 0.42 tolerated(0.1) possibly_damaging(0.543) TCGA-L5-A8NE-01 19 44351116 44351116 C A ZNF283 Silent p.T121T 0.43 TCGA-L5-A8NE-01 19 48978119 48978119 G T CYTH2 Nonsense_Mutation p.E241* 0.32 TCGA-L5-A8NE-01 19 50169243 50169243 G C BCL2L12 Missense_Mutation p.V55L 0.45 deleterious_low_confidence(0.02) probably_damaging(0.971) TCGA-L5-A8NE-01 19 52329052 52329052 T C FPR3 3'UTR 0.46 TCGA-L5-A8NE-01 19 52375781 52375781 A C ZNF577 3'UTR 0.38 TCGA-L5-A8NE-01 19 53473786 53473786 A C ZNF702P RNA 0.51 TCGA-L5-A8NE-01 19 53572986 53572986 A T ZNF160 Silent p.T267T 0.34 TCGA-L5-A8NE-01 19 53762203 53762203 A T VN1R2 Missense_Mutation p.N192I 0.34 deleterious(0.01) benign(0.205) TCGA-L5-A8NE-01 19 56889139 56889139 A G ZNF582 3'Flank 0.50 TCGA-L5-A8NE-01 19 56952879 56952879 T G ZNF667 Missense_Mutation p.E495D 0.39 tolerated(0.35) probably_damaging(0.994) TCGA-L5-A8NE-01 19 57325534 57325534 C A PEG3 Missense_Mutation p.D1426Y 0.49 deleterious(0.01) possibly_damaging(0.885) TCGA-L5-A8NE-01 19 57326873 57326873 A G PEG3 Silent p.A979A 0.36 TCGA-L5-A8NE-01 19 57840428 57840428 A T ZNF543 Missense_Mutation p.K533M 0.38 deleterious(0.01) possibly_damaging(0.869) TCGA-L5-A8NE-01 19 6665098 6665098 C T TNFSF14 Missense_Mutation p.G188R 0.41 tolerated(0.1) benign(0.013) TCGA-L5-A8NE-01 19 6906515 6906515 G T EMR1 Missense_Mutation p.A341S 0.31 tolerated(0.15) benign(0.051) TCGA-L5-A8NE-01 19 6972314 6972314 A C EMR4P RNA 0.35 TCGA-L5-A8NE-01 19 8808052 8808052 A C ACTL9 Missense_Mutation p.L334V 0.33 tolerated(0.63) benign(0.003) TCGA-L5-A8NE-01 19 9579815 9579815 T G ZNF560 Missense_Mutation p.N193T 0.27 tolerated(0.68) benign(0.018) TCGA-L5-A8NE-01 1 101006419 101006419 G T GPR88 3'UTR 0.24 TCGA-L5-A8NE-01 1 108679054 108679054 A C SLC25A24 3'UTR 0.36 TCGA-L5-A8NE-01 1 114304753 114304753 G A RSBN1 3'UTR 0.27 TCGA-L5-A8NE-01 1 150192674 150192674 C A ANP32E 3'UTR 0.22 TCGA-L5-A8NE-01 1 150460427 150460427 G A TARS2 Missense_Mutation p.A54T 0.16 tolerated(0.08) benign(0.014) TCGA-L5-A8NE-01 1 151824837 151824837 C T THEM5 Silent p.L74L 0.61 TCGA-L5-A8NE-01 1 152282747 152282747 T G FLG Missense_Mutation p.S1539R 0.17 benign(0.307) TCGA-L5-A8NE-01 1 152327672 152327672 T G FLG2 Missense_Mutation p.S864R 0.16 unknown(0) TCGA-L5-A8NE-01 1 152784845 152784845 A G LCE1B 5'UTR 0.65 TCGA-L5-A8NE-01 1 152785167 152785167 G A LCE1B Missense_Mutation p.R82H 0.17 tolerated_low_confidence(0.31) unknown(0) TCGA-L5-A8NE-01 1 152882878 152882878 A G IVL Missense_Mutation p.Q202R 0.07 deleterious(0.04) unknown(0) TCGA-L5-A8NE-01 1 152883121 152883121 T C IVL Missense_Mutation p.L283P 0.17 tolerated(0.2) probably_damaging(0.998) TCGA-L5-A8NE-01 1 158450322 158450322 A G OR10R2 Missense_Mutation p.I219V 0.16 tolerated(0.47) benign(0.12) TCGA-L5-A8NE-01 1 158517216 158517216 A C OR6Y1 Missense_Mutation p.L227R 0.16 deleterious(0.01) possibly_damaging(0.908) TCGA-L5-A8NE-01 1 167023468 167023468 G A GPA33 3'UTR 0.69 TCGA-L5-A8NE-01 1 170965775 170965775 T G MROH9 Missense_Mutation p.F489V 0.14 deleterious(0.02) benign(0.006) TCGA-L5-A8NE-01 1 179631398 179631398 T G TDRD5 Missense_Mutation p.S828A 0.57 tolerated(0.12) benign(0.012) TCGA-L5-A8NE-01 1 180166611 180166611 C T QSOX1 3'UTR 0.83 TCGA-L5-A8NE-01 1 182844088 182844088 A T DHX9 Missense_Mutation p.D605V 0.72 deleterious(0.03) possibly_damaging(0.572) TCGA-L5-A8NE-01 1 186086206 186086206 G A HMCN1 Missense_Mutation p.G3881D 0.20 benign(0.005) TCGA-L5-A8NE-01 1 196875999 196875999 G A CFHR4 Missense_Mutation p.D149N 0.14 tolerated(0.12) possibly_damaging(0.708) TCGA-L5-A8NE-01 1 198828087 198828087 T C MIR181B1 RNA 0.05 TCGA-L5-A8NE-01 1 201355983 201355984 CT - LAD1 Frame_Shift_Del p.R169Efs*23 0.14 TCGA-L5-A8NE-01 1 237666672 237666672 T C RYR2 Missense_Mutation p.L827P 0.71 benign(0.025) TCGA-L5-A8NE-01 1 245005261 245005261 G A COX20 Missense_Mutation p.G20R 0.11 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 1 247921558 247921558 A C OR1C1 Missense_Mutation p.F51V 0.71 tolerated(0.56) benign(0.039) TCGA-L5-A8NE-01 1 248039764 248039764 T C TRIM58 Silent p.A478A 0.16 TCGA-L5-A8NE-01 1 33613224 33613224 G A TRIM62 Nonsense_Mutation p.Q328* 0.25 TCGA-L5-A8NE-01 1 34330011 34330011 A C HMGB4 Missense_Mutation p.E73D 0.47 tolerated(0.06) benign(0.016) TCGA-L5-A8NE-01 1 34330225 34330225 A G HMGB4 Missense_Mutation p.R145G 0.17 deleterious(0.01) benign(0.446) TCGA-L5-A8NE-01 1 40916691 40916691 C T ZFP69B Missense_Mutation p.R20C 0.18 deleterious(0.04) benign(0) TCGA-L5-A8NE-01 1 46193439 46193439 C T IPP Nonsense_Mutation p.W304* 0.37 TCGA-L5-A8NE-01 1 6281685 6281685 G A ICMT 3'UTR 0.09 TCGA-L5-A8NE-01 1 65878666 65878666 C G DNAJC6 Silent p.A957A 0.36 TCGA-L5-A8NE-01 1 76387872 76387872 C T ASB17 Missense_Mutation p.V192I 0.48 tolerated(0.18) benign(0.417) TCGA-L5-A8NE-01 1 9640067 9640067 A G SLC25A33 Missense_Mutation p.T180A 0.26 tolerated(0.19) benign(0.33) TCGA-L5-A8NE-01 20 55213754 55213754 C T TFAP2C 3'UTR 0.13 TCGA-L5-A8NE-01 20 58519165 58519165 C G FAM217B Missense_Mutation p.A56G 0.23 tolerated(1) benign(0) TCGA-L5-A8NE-01 21 26965201 26965201 C T MRPL39 Missense_Mutation p.A282T 0.06 deleterious(0) possibly_damaging(0.856) TCGA-L5-A8NE-01 21 33374239 33374239 A C HUNK 3'UTR 0.24 TCGA-L5-A8NE-01 22 32000874 32000874 G A SFI1 Missense_Mutation p.R666Q 0.68 tolerated(0.63) benign(0.01) TCGA-L5-A8NE-01 22 46643007 46643007 C T CDPF1 Silent p.P75P 0.25 TCGA-L5-A8NE-01 2 120020751 120020751 C T STEAP3 Missense_Mutation p.T445M 0.38 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NE-01 2 133543120 133543120 T G NCKAP5 Missense_Mutation p.T422P 0.51 deleterious(0.02) benign(0.386) TCGA-L5-A8NE-01 2 137988781 137988781 A C THSD7B Missense_Mutation p.T631P 0.32 deleterious(0) probably_damaging(0.934) TCGA-L5-A8NE-01 2 154801092 154801092 T G GALNT13 Missense_Mutation p.F28V 0.48 deleterious(0.01) benign(0.375) TCGA-L5-A8NE-01 2 159514662 159514662 C A PKP4 Silent p.S643S 0.22 TCGA-L5-A8NE-01 2 176987473 176987473 A G HOXD9 5'UTR 0.38 TCGA-L5-A8NE-01 2 179596613 179596613 A G TTN Silent p.T5663T 0.41 TCGA-L5-A8NE-01 2 182794661 182794661 C T SSFA2 3'UTR 0.39 TCGA-L5-A8NE-01 2 185800871 185800871 A C ZNF804A Missense_Mutation p.S250R 0.34 deleterious(0.05) probably_damaging(0.979) TCGA-L5-A8NE-01 2 185802671 185802671 A C ZNF804A Missense_Mutation p.S850R 0.73 tolerated(0.07) benign(0) TCGA-L5-A8NE-01 2 20205632 20205632 G A MATN3 Silent p.G221G 0.33 TCGA-L5-A8NE-01 2 20838373 20838373 T A HS1BP3 Missense_Mutation p.D149V 0.23 deleterious(0.01) possibly_damaging(0.475) TCGA-L5-A8NE-01 2 210561678 210561678 A C MAP2 Missense_Mutation p.E1475D 0.29 tolerated(0.06) possibly_damaging(0.836) TCGA-L5-A8NE-01 2 228681989 228681989 A C CCL20 3'UTR 0.53 TCGA-L5-A8NE-01 2 26724638 26724638 C T OTOF Missense_Mutation p.R250Q 0.20 deleterious(0.01) possibly_damaging(0.895) TCGA-L5-A8NE-01 2 32859031 32859031 C T TTC27 Nonsense_Mutation p.Q119* 0.49 TCGA-L5-A8NE-01 2 42508029 42508029 T A EML4 Missense_Mutation p.I236N 0.28 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 2 50779806 50779806 T C NRXN1 Missense_Mutation p.T600A 0.50 tolerated(0.49) benign(0.056) TCGA-L5-A8NE-01 2 5840742 5840742 C - SOX11 3'UTR 0.18 TCGA-L5-A8NE-01 2 86832517 86832517 G A RNF103 Silent p.V169V 0.15 TCGA-L5-A8NE-01 2 97357275 97357275 C T FER1L5 RNA 0.28 TCGA-L5-A8NE-01 2 97866072 97866072 G A ANKRD36 Silent p.V919V 0.17 TCGA-L5-A8NE-01 3 100508347 100508347 A C ABI3BP Missense_Mutation p.F660L 0.56 tolerated(1) benign(0) TCGA-L5-A8NE-01 3 100976494 100976494 T G IMPG2 Missense_Mutation p.K344N 0.69 tolerated(0.69) possibly_damaging(0.658) TCGA-L5-A8NE-01 3 10864996 10864996 T G SLC6A11 Missense_Mutation p.V181G 0.31 deleterious(0.01) benign(0.015) TCGA-L5-A8NE-01 3 157004431 157004431 T G VEPH1 Missense_Mutation p.E681D 0.55 deleterious(0.05) benign(0.126) TCGA-L5-A8NE-01 3 164906581 164906581 G A SLITRK3 Nonsense_Mutation p.R680* 0.17 TCGA-L5-A8NE-01 3 165547508 165547508 T G BCHE Silent p.S438S 0.73 TCGA-L5-A8NE-01 3 165548672 165548672 A C BCHE Silent p.G50G 0.13 TCGA-L5-A8NE-01 3 184107275 184107275 G A CHRD 3'UTR 0.28 TCGA-L5-A8NE-01 3 195509697 195509697 A C MUC4 Silent p.T2918T 0.11 TCGA-L5-A8NE-01 3 48697920 48697920 A C CELSR3 Silent p.R716R 0.29 TCGA-L5-A8NE-01 3 49571795 49571795 G A DAG1 3'UTR 0.19 TCGA-L5-A8NE-01 3 49756121 49756121 G A AMIGO3 Missense_Mutation p.R260C 0.36 tolerated(0.1) possibly_damaging(0.517) TCGA-L5-A8NE-01 3 51317601 51317601 T A DOCK3 Missense_Mutation p.L963H 0.36 deleterious(0) probably_damaging(0.94) TCGA-L5-A8NE-01 3 51387791 51387791 T G DOCK3 Missense_Mutation p.F1359V 0.45 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NE-01 3 57509603 57509603 C T DNAH12 Missense_Mutation p.G60E 0.20 tolerated(1) benign(0.01) TCGA-L5-A8NE-01 3 89448604 89448604 A C EPHA3 Missense_Mutation p.K523T 0.36 tolerated(0.32) benign(0.005) TCGA-L5-A8NE-01 3 98109656 98109656 T G OR5K3 Missense_Mutation p.I49M 0.58 deleterious(0) probably_damaging(0.916) TCGA-L5-A8NE-01 4 102984282 102984282 A C BANK1 Missense_Mutation p.E733D 0.49 tolerated(0.32) benign(0.038) TCGA-L5-A8NE-01 4 119552530 119552530 T G RP11-384K6.6 RNA 0.46 TCGA-L5-A8NE-01 4 122800643 122800643 A C TRPC3 3'UTR 0.41 TCGA-L5-A8NE-01 4 138451944 138451944 C A PCDH18 Missense_Mutation p.L433F 0.41 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NE-01 4 138452917 138452917 T G PCDH18 Missense_Mutation p.D109A 0.46 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NE-01 4 174252862 174252862 A G HMGB2 3'UTR 0.33 TCGA-L5-A8NE-01 4 438107 438107 C T ZNF721 Missense_Mutation p.R50K 0.39 tolerated(0.36) benign(0.006) TCGA-L5-A8NE-01 4 47593309 47593309 T G ATP10D Missense_Mutation p.L1398V 0.39 tolerated_low_confidence(0.26) benign(0.001) TCGA-L5-A8NE-01 4 6474024 6474024 G A PPP2R2C 5'UTR 0.34 TCGA-L5-A8NE-01 4 69048154 69048154 G A FTLP10 RNA 0.34 TCGA-L5-A8NE-01 4 70707713 70707713 T C SULT1E1 Silent p.%3D 0.32 TCGA-L5-A8NE-01 4 95223334 95223334 G A HPGDS Missense_Mutation p.T133I 0.33 tolerated(0.14) benign(0.096) TCGA-L5-A8NE-01 5 115823894 115823894 T G SEMA6A Splice_Site p.X219_splice 0.54 TCGA-L5-A8NE-01 5 121488877 121488877 T G ZNF474 3'UTR 0.38 TCGA-L5-A8NE-01 5 129520931 129520931 T G CHSY3 Missense_Mutation p.L699R 0.33 tolerated(0.15) benign(0.108) TCGA-L5-A8NE-01 5 138221961 138221961 A G CTNNA1 Missense_Mutation p.T375A 0.26 tolerated(0.09) benign(0.072) TCGA-L5-A8NE-01 5 13824430 13824430 A C DNAH5 Missense_Mutation p.F2153V 0.36 possibly_damaging(0.637) TCGA-L5-A8NE-01 5 154395563 154395563 A C KIF4B Missense_Mutation p.K715T 0.54 deleterious(0) possibly_damaging(0.883) TCGA-L5-A8NE-01 5 156381443 156381443 C T TIMD4 Missense_Mutation p.R128H 0.45 tolerated(0.2) benign(0.051) TCGA-L5-A8NE-01 5 156513982 156513982 G T HAVCR2 3'UTR 0.23 TCGA-L5-A8NE-01 5 156608051 156608051 T G ITK Silent p.T21T 0.11 TCGA-L5-A8NE-01 5 156671346 156671346 A C ITK Missense_Mutation p.E436A 0.15 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NE-01 5 160033953 160033953 T G ATP10B Missense_Mutation p.E993D 0.20 tolerated(0.53) benign(0.008) TCGA-L5-A8NE-01 5 16067877 16067877 T C MARCH11 Silent p.A304A 0.62 TCGA-L5-A8NE-01 5 161277886 161277886 A G GABRA1 Missense_Mutation p.R24G 0.26 tolerated(0.28) benign(0.012) TCGA-L5-A8NE-01 5 16666282 16666282 C G MYO10 3'UTR 0.30 TCGA-L5-A8NE-01 5 167645899 167645899 A T TENM2 Missense_Mutation p.K1668I 0.17 deleterious(0) possibly_damaging(0.905) TCGA-L5-A8NE-01 5 169423113 169423113 A C DOCK2 Missense_Mutation p.K1006T 0.41 tolerated(0.4) benign(0.005) TCGA-L5-A8NE-01 5 170738882 170738882 C A TLX3 3'UTR 0.24 TCGA-L5-A8NE-01 5 176523718 176523718 G A FGFR4 Missense_Mutation p.R710Q 0.66 tolerated(0.06) possibly_damaging(0.621) TCGA-L5-A8NE-01 5 176951252 176951252 A T FAM193B Missense_Mutation p.L744M 0.23 deleterious(0.04) benign(0.135) TCGA-L5-A8NE-01 5 178392181 178392181 T A ZNF454 Missense_Mutation p.L259H 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 5 31305342 31305342 T G CDH6 Missense_Mutation p.V354G 0.45 deleterious(0.04) benign(0.19) TCGA-L5-A8NE-01 5 31424571 31424571 C T DROSHA Missense_Mutation p.R1075H 0.14 tolerated(0.65) benign(0.003) TCGA-L5-A8NE-01 5 32229815 32229815 T A MTMR12 3'UTR 0.31 TCGA-L5-A8NE-01 5 35086442 35086442 C T PRLR Missense_Mutation p.G24E 0.17 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A8NE-01 5 35654808 35654811 ATAG T SPEF2 In_Frame_Del p.I320_A321delinsS 0.30 TCGA-L5-A8NE-01 5 36984883 36984883 G A NIPBL Missense_Mutation p.G534E 0.21 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-L5-A8NE-01 5 38406988 38406988 A C EGFLAM Missense_Mutation p.K296T 0.26 tolerated_low_confidence(0.76) benign(0.001) TCGA-L5-A8NE-01 5 72849286 72849286 T C ANKRA2 Silent p.E277E 0.17 TCGA-L5-A8NE-01 5 72857076 72857076 A C ANKRA2 Missense_Mutation p.I109M 0.22 deleterious(0.03) probably_damaging(0.991) TCGA-L5-A8NE-01 5 7831914 7831914 T G C5orf49 3'UTR 0.30 TCGA-L5-A8NE-01 5 82815484 82815484 A G VCAN Silent p.S453S 0.22 TCGA-L5-A8NE-01 5 98129163 98129163 C A RGMB Silent p.T381T 0.31 TCGA-L5-A8NE-01 6 110428322 110428322 C T WASF1 Silent p.L166L 0.49 TCGA-L5-A8NE-01 6 118556681 118556681 A C SLC35F1 Missense_Mutation p.N120T 0.33 deleterious(0.01) benign(0.155) TCGA-L5-A8NE-01 6 121600279 121600279 G A TBC1D32 Missense_Mutation p.S574F 0.31 tolerated(0.06) probably_damaging(0.93) TCGA-L5-A8NE-01 6 125233554 125233554 T - RP11-510H23.1 RNA 0.32 TCGA-L5-A8NE-01 6 125397905 125397905 T G RNF217 Missense_Mutation p.F170V 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A8NE-01 6 129581967 129581967 A C LAMA2 Missense_Mutation p.E736D 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 6 129837421 129837421 C T LAMA2 Missense_Mutation p.P3100S 0.47 tolerated(0.69) benign(0.011) TCGA-L5-A8NE-01 6 170140244 170140244 A C TCTE3 3'UTR 0.65 TCGA-L5-A8NE-01 6 28543320 28543320 C T SCAND3 Missense_Mutation p.G388R 0.85 tolerated_low_confidence(0.05) probably_damaging(0.999) TCGA-L5-A8NE-01 6 29323840 29323840 T G OR5V1 Missense_Mutation p.I45L 0.80 deleterious(0.05) benign(0.015) TCGA-L5-A8NE-01 6 29797279 29797279 C T HLA-G Missense_Mutation p.A235V 0.78 deleterious_low_confidence(0.03) probably_damaging(0.998) TCGA-L5-A8NE-01 6 30859227 30859227 C T DDR1 Silent p.D212D 0.17 TCGA-L5-A8NE-01 6 497386 497386 C T EXOC2 Missense_Mutation p.S847N 0.09 tolerated(0.39) benign(0.205) TCGA-L5-A8NE-01 6 88851162 88851162 A T CNR1 3'UTR 0.71 TCGA-L5-A8NE-01 6 93951485 93951485 A C EPHA7 3'UTR 0.29 TCGA-L5-A8NE-01 7 104748371 104748371 A G KMT2E Missense_Mutation p.K1156R 0.09 deleterious_low_confidence(0) benign(0.292) TCGA-L5-A8NE-01 7 110763556 110763556 T C LRRN3 Missense_Mutation p.F243S 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 7 144015564 144015564 T G OR2A1 Missense_Mutation p.L116R 0.32 deleterious(0) benign(0.066) TCGA-L5-A8NE-01 7 17855816 17855816 C T SNX13 Missense_Mutation p.A648T 0.42 tolerated(0.24) benign(0.026) TCGA-L5-A8NE-01 7 31735172 31735172 T G PPP1R17 Missense_Mutation p.S58A 0.40 tolerated_low_confidence(1) benign(0.016) TCGA-L5-A8NE-01 7 37382289 37382289 C A ELMO1 Silent p.P2P 0.54 TCGA-L5-A8NE-01 7 37927917 37927917 A C NME8 Missense_Mutation p.N429T 0.53 deleterious(0) probably_damaging(0.982) TCGA-L5-A8NE-01 7 50514642 50514642 A G FIGNL1 Missense_Mutation p.V115A 0.26 deleterious(0.02) benign(0.06) TCGA-L5-A8NE-01 7 50596980 50596980 G A DDC Missense_Mutation p.R166W 0.36 deleterious(0) possibly_damaging(0.641) TCGA-L5-A8NE-01 7 5105367 5105367 C T RBAK 3'UTR 0.64 TCGA-L5-A8NE-01 7 5353350 5353350 G A TNRC18 Missense_Mutation p.P2391L 0.38 benign(0) TCGA-L5-A8NE-01 7 70254984 70254984 G A AUTS2 Missense_Mutation p.A928T 0.25 tolerated(0.64) benign(0.002) TCGA-L5-A8NE-01 7 72912901 72912901 G T BAZ1B Missense_Mutation p.S166Y 0.33 deleterious(0.01) probably_damaging(0.909) TCGA-L5-A8NE-01 7 82390054 82390055 - T PCLO Frame_Shift_Ins p.V5064Gfs*12 0.33 TCGA-L5-A8NE-01 7 8474277 8474277 G A NXPH1 5'UTR 0.40 TCGA-L5-A8NE-01 7 87908875 87908875 G C STEAP4 Missense_Mutation p.F406L 0.26 tolerated(0.06) probably_damaging(0.995) TCGA-L5-A8NE-01 8 104898284 104898284 A C RIMS2 Missense_Mutation p.D486A 0.30 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A8NE-01 8 107752632 107752632 G T OXR1 Missense_Mutation p.G743V 0.27 tolerated(0.69) benign(0.015) TCGA-L5-A8NE-01 8 113358340 113358340 A G CSMD3 Missense_Mutation p.L2143P 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-L5-A8NE-01 8 133187785 133187785 T C KCNQ3 Missense_Mutation p.E283G 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NE-01 8 32463100 32463100 A C NRG1 Missense_Mutation p.N100T 0.55 tolerated(0.39) benign(0.013) TCGA-L5-A8NE-01 8 36671732 36671732 A C KCNU1 Missense_Mutation p.N247T 0.41 deleterious(0) probably_damaging(1) TCGA-L5-A8NE-01 8 42692744 42692744 A C THAP1 3'UTR 0.39 TCGA-L5-A8NE-01 8 69005845 69005845 T G PREX2 Missense_Mutation p.D752E 0.64 tolerated_low_confidence(0.42) benign(0.248) TCGA-L5-A8NE-01 8 69031715 69031715 A C PREX2 Missense_Mutation p.K1157T 0.11 deleterious(0) benign(0.133) TCGA-L5-A8NE-01 8 95501071 95501071 G A KIAA1429 Missense_Mutation p.R1768W 0.38 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 9 100071871 100071871 A C CCDC180 Missense_Mutation p.N126T 0.21 deleterious(0.04) probably_damaging(0.948) TCGA-L5-A8NE-01 9 105757633 105757633 T G CYLC2 5'UTR 0.43 TCGA-L5-A8NE-01 9 107298746 107298746 A G OR13C3 Missense_Mutation p.S117P 0.40 deleterious(0) probably_damaging(0.955) TCGA-L5-A8NE-01 9 111624721 111624721 G A ACTL7A Missense_Mutation p.R40Q 0.28 tolerated_low_confidence(0.15) benign(0.001) TCGA-L5-A8NE-01 9 114985790 114985790 A G PTBP3 3'UTR 0.27 TCGA-L5-A8NE-01 9 116627 116627 G A FOXD4 3'UTR 0.08 TCGA-L5-A8NE-01 9 131860909 131860909 C T CRAT Missense_Mutation p.R369Q 0.30 tolerated(0.3) benign(0.003) TCGA-L5-A8NE-01 9 13193271 13193271 C T MPDZ Silent p.G566G 0.21 TCGA-L5-A8NE-01 9 14846024 14846024 C T FREM1 Missense_Mutation p.D443N 0.52 deleterious(0.02) benign(0.372) TCGA-L5-A8NE-01 9 32785197 32785197 A C TMEM215 3'UTR 0.62 TCGA-L5-A8NE-01 9 33116035 33116035 T G B4GALT1 Missense_Mutation p.N305H 0.19 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NE-01 9 33364102 33364102 G A NFX1 Missense_Mutation p.A990T 0.33 deleterious(0) possibly_damaging(0.752) TCGA-L5-A8NE-01 9 35449617 35449617 A G ATP8B5P Splice_Site 0.33 TCGA-L5-A8NE-01 9 8331729 8331729 T C PTPRD Missense_Mutation p.Q1796R 0.58 deleterious(0) probably_damaging(0.972) TCGA-L5-A8NE-01 9 86583120 86583120 G A HNRNPK 3'UTR 0.56 TCGA-L5-A8NE-01 9 89771741 89771741 T A C9orf170 3'UTR 0.35 TCGA-L5-A8NE-01 X 114142830 114142830 T G HTR2C 3'UTR 0.85 TCGA-L5-A8NE-01 X 129200949 129200949 G - ELF4 Frame_Shift_Del p.P580Qfs*30 0.45 TCGA-L5-A8NE-01 X 132090940 132090940 G T HS6ST2 Missense_Mutation p.F281L 0.80 deleterious(0.03) benign(0.026) TCGA-L5-A8NE-01 X 18917322 18917322 G A PHKA2 Missense_Mutation p.A1027V 0.43 tolerated(0.35) benign(0) TCGA-L5-A8NE-01 X 37026951 37026951 G C FAM47C Missense_Mutation p.E156D 0.74 tolerated(0.5) possibly_damaging(0.646) TCGA-L5-A8NE-01 X 38031202 38031202 A C SRPX Missense_Mutation p.L153W 0.89 deleterious(0) probably_damaging(0.994) TCGA-L5-A8NE-01 X 91132816 91132816 A C PCDH11X Missense_Mutation p.K526T 0.94 tolerated(0.77) benign(0.407) TCGA-L5-A8NE-01 X 96139622 96139622 C T RPA4 Nonsense_Mutation p.R105* 0.83 TCGA-L5-A8NE-01 Y 9195435 9195435 G A TSPY8 5'Flank 0.39 TCGA-L5-A8NF-01 10 104816695 104816695 G A CNNM2 Missense_Mutation p.V683I 0.16 tolerated(0.07) benign(0.041) TCGA-L5-A8NF-01 10 106907435 106907435 C G SORCS3 Missense_Mutation p.Q455E 0.16 tolerated(0.06) benign(0.348) TCGA-L5-A8NF-01 10 11375551 11375551 T A CELF2 3'UTR 0.26 TCGA-L5-A8NF-01 10 120354100 120354100 C A PRLHR Missense_Mutation p.E219D 0.71 deleterious(0.03) probably_damaging(0.992) TCGA-L5-A8NF-01 10 124249032 124249032 A G HTRA1 Missense_Mutation p.T223A 0.16 tolerated(0.45) benign(0.003) TCGA-L5-A8NF-01 10 26462823 26462823 A C MYO3A Missense_Mutation p.E1210D 0.23 tolerated_low_confidence(0.16) benign(0.009) TCGA-L5-A8NF-01 10 37418838 37418838 C A ANKRD30A Missense_Mutation p.A24D 0.46 deleterious(0) probably_damaging(0.975) TCGA-L5-A8NF-01 10 45938923 45938923 C T ALOX5 Missense_Mutation p.P504L 0.17 tolerated(0.83) benign(0.001) TCGA-L5-A8NF-01 10 6157201 6157219 GATTCCTGGTGCCCCTGAT - RBM17 Splice_Site p.X344_splice 0.11 TCGA-L5-A8NF-01 10 71705429 71705429 C A COL13A1 Silent p.G646G 0.33 TCGA-L5-A8NF-01 10 75197771 75197771 C A PPP3CB 3'UTR 0.13 TCGA-L5-A8NF-01 10 89624063 89624063 G T PTEN 5'UTR 0.40 TCGA-L5-A8NF-01 10 93740298 93740298 C A BTAF1 Missense_Mutation p.L580M 0.20 tolerated(0.25) possibly_damaging(0.541) TCGA-L5-A8NF-01 11 1011560 1011566 TCTCACC - AP2A2 3'UTR 0.23 TCGA-L5-A8NF-01 11 124252550 124252550 G T OR8B2 Silent p.S230S 0.17 TCGA-L5-A8NF-01 11 19077360 19077360 A G MRGPRX2 Missense_Mutation p.V197A 0.33 tolerated(0.12) benign(0.445) TCGA-L5-A8NF-01 11 20181682 20181682 C T DBX1 Missense_Mutation p.M63I 0.27 tolerated(0.11) benign(0.002) TCGA-L5-A8NF-01 11 5530262 5530262 A G UBQLN3 Missense_Mutation p.F176S 0.21 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NF-01 11 66191636 66191636 T G NPAS4 Silent p.P425P 0.11 TCGA-L5-A8NF-01 11 70172713 70172713 A C PPFIA1 Missense_Mutation p.D240A 0.05 tolerated(0.06) benign(0.004) TCGA-L5-A8NF-01 11 7111369 7111369 C T RBMXL2 Nonsense_Mutation p.R340* 0.44 TCGA-L5-A8NF-01 11 71717113 71717113 G A NUMA1 Missense_Mutation p.S1887F 0.08 probably_damaging(0.999) TCGA-L5-A8NF-01 11 72438099 72438099 C A ARAP1 Silent p.G25G 0.13 TCGA-L5-A8NF-01 11 72547930 72547930 G A FCHSD2 3'Flank 0.05 TCGA-L5-A8NF-01 11 74977157 74977157 C T ARRB1 3'UTR 0.28 TCGA-L5-A8NF-01 11 75188816 75188816 C T GDPD5 5'UTR 0.45 TCGA-L5-A8NF-01 12 109972420 109972420 G A UBE3B Missense_Mutation p.V1014I 0.31 deleterious(0.01) probably_damaging(0.954) TCGA-L5-A8NF-01 12 110208199 110208200 - T FAM222A 3'UTR 0.15 TCGA-L5-A8NF-01 12 21791381 21791384 CATT - LDHB Frame_Shift_Del p.N206Wfs*9 0.10 TCGA-L5-A8NF-01 12 40634305 40634305 G T LRRK2 Nonsense_Mutation p.E198* 0.23 TCGA-L5-A8NF-01 12 45000977 45000977 G C NELL2 Silent p.G596G 0.06 TCGA-L5-A8NF-01 12 66359481 66359481 C T HMGA2 3'UTR 0.03 TCGA-L5-A8NF-01 12 67696290 67696290 C T CAND1 Silent p.H396H 0.14 TCGA-L5-A8NF-01 12 72057007 72057007 A T ZFC3H1 Missense_Mutation p.S128R 0.25 deleterious(0.03) benign(0.307) TCGA-L5-A8NF-01 12 8759587 8759587 C A AICDA Missense_Mutation p.K10N 0.09 deleterious(0.03) benign(0.142) TCGA-L5-A8NF-01 13 112725417 112725417 C A SOX1 3'UTR 0.19 TCGA-L5-A8NF-01 13 20048088 20048089 - A TPTE2 Frame_Shift_Ins p.L120Sfs*19 0.13 TCGA-L5-A8NF-01 13 32912267 32912267 A C BRCA2 Missense_Mutation p.S1259R 0.22 tolerated(0.11) benign(0.193) TCGA-L5-A8NF-01 13 35644148 35644148 A C NBEA Missense_Mutation p.N448T 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NF-01 13 38320271 38320271 C A TRPC4 Nonsense_Mutation p.E234* 0.13 TCGA-L5-A8NF-01 13 84455568 84455568 T G SLITRK1 Missense_Mutation p.K25N 0.18 tolerated(0.18) possibly_damaging(0.532) TCGA-L5-A8NF-01 14 24607555 24607555 T C PSME1 Missense_Mutation p.Y177H 0.52 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A8NF-01 14 29237633 29237633 C T FOXG1 Missense_Mutation p.A383V 0.21 tolerated(0.09) benign(0.17) TCGA-L5-A8NF-01 14 57674032 57674032 G C EXOC5 3'UTR 0.26 TCGA-L5-A8NF-01 14 74180966 74180966 G A PNMA1 5'UTR 0.33 TCGA-L5-A8NF-01 14 74759260 74759260 G A ABCD4 Missense_Mutation p.T341M 0.57 deleterious(0) probably_damaging(0.96) TCGA-L5-A8NF-01 14 75388105 75388105 C A RPS6KL1 Missense_Mutation p.R47L 0.25 deleterious(0.02) benign(0.209) TCGA-L5-A8NF-01 14 76114025 76114025 T C FLVCR2 3'UTR 0.15 TCGA-L5-A8NF-01 14 88945583 88945583 C T PTPN21 Missense_Mutation p.R731H 0.60 tolerated_low_confidence(0.55) benign(0.001) TCGA-L5-A8NF-01 15 101189314 101189314 G T ASB7 3'UTR 0.61 TCGA-L5-A8NF-01 15 20588551 20588551 A C HERC2P3 RNA 0.36 TCGA-L5-A8NF-01 15 20737811 20737811 G T GOLGA6L6 3'UTR 0.43 TCGA-L5-A8NF-01 15 75890977 75890977 C T SNUPN Missense_Mutation p.G269R 0.46 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NF-01 15 78211653 78211653 C T RP11-114H24.7 Intron 0.59 TCGA-L5-A8NF-01 15 81201538 81201538 G A KIAA1199 Missense_Mutation p.G563D 0.11 deleterious(0.02) probably_damaging(1) TCGA-L5-A8NF-01 16 11827869 11827873 AAAAG - TXNDC11 Frame_Shift_Del p.F178Lfs*27 0.10 TCGA-L5-A8NF-01 16 1818620 1818620 C T MAPK8IP3 Silent p.F1294F 0.20 TCGA-L5-A8NF-01 16 2144123 2144123 G A PKD1 Nonsense_Mutation p.Q3530* 0.35 TCGA-L5-A8NF-01 16 31390952 31390952 C A ITGAX Silent p.A951A 0.21 TCGA-L5-A8NF-01 16 46771735 46771735 G A MYLK3 Missense_Mutation p.P297S 0.11 tolerated(0.29) benign(0.035) TCGA-L5-A8NF-01 16 7761600 7761600 T - RBFOX1 3'UTR 0.18 TCGA-L5-A8NF-01 16 89778882 89778882 C T VPS9D1 Missense_Mutation p.A198T 0.46 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NF-01 17 10265724 10265724 C A MYH13 Missense_Mutation p.A101S 0.15 tolerated(0.99) benign(0.145) TCGA-L5-A8NF-01 17 37234192 37234192 A T PLXDC1 Missense_Mutation p.L387H 0.25 tolerated(0.62) possibly_damaging(0.527) TCGA-L5-A8NF-01 17 38933254 38933254 G A KRT27 Silent p.S459S 0.62 TCGA-L5-A8NF-01 17 39183284 39183284 T C KRTAP1-5 Missense_Mutation p.T42A 0.14 tolerated(0.05) unknown(0) TCGA-L5-A8NF-01 17 41003593 41003593 G A AOC3 Missense_Mutation p.R78Q 0.48 tolerated(1) benign(0) TCGA-L5-A8NF-01 17 46673330 46673331 - G HOXB6 3'UTR 0.17 TCGA-L5-A8NF-01 17 64224243 64224243 C T APOH Missense_Mutation p.E46K 0.28 tolerated(0.07) benign(0.146) TCGA-L5-A8NF-01 17 8638852 8638852 C T CCDC42 Silent p.Q190Q 0.22 TCGA-L5-A8NF-01 18 31325070 31325070 T C ASXL3 Missense_Mutation p.L1753S 0.45 probably_damaging(0.999) TCGA-L5-A8NF-01 18 32395957 32395957 C T DTNA Nonsense_Mutation p.R230* 0.30 TCGA-L5-A8NF-01 19 10077032 10077032 C T COL5A3 Silent p.A1580A 0.17 TCGA-L5-A8NF-01 19 10381798 10381798 G C ICAM1 5'UTR 0.85 TCGA-L5-A8NF-01 19 15989681 15989681 C T CYP4F2 Missense_Mutation p.R488H 0.23 tolerated(0.06) benign(0.178) TCGA-L5-A8NF-01 19 20308936 20308936 T - ZNF486 3'UTR 0.16 TCGA-L5-A8NF-01 19 31769567 31769567 A G TSHZ3 Missense_Mutation p.F378L 0.32 deleterious(0.03) probably_damaging(0.996) TCGA-L5-A8NF-01 19 36339237 36339237 G A NPHS1 Silent p.N411N 0.35 TCGA-L5-A8NF-01 19 37382913 37382913 T C ZNF829 Silent p.R341R 0.08 TCGA-L5-A8NF-01 19 37382964 37382964 C T ZNF829 Silent p.K324K 0.07 TCGA-L5-A8NF-01 19 38167210 38167210 T C ZNF781 Intron 0.35 TCGA-L5-A8NF-01 19 49536457 49536457 C G CGB2 Missense_Mutation p.D157E 0.36 tolerated_low_confidence(0.11) benign(0.304) TCGA-L5-A8NF-01 19 50826458 50826458 C T KCNC3 Silent p.P584P 0.30 TCGA-L5-A8NF-01 19 52090051 52090051 T C ZNF175 Missense_Mutation p.M156T 0.33 tolerated(0.13) benign(0) TCGA-L5-A8NF-01 19 53885241 53885241 G T ZNF525 Missense_Mutation p.G470V 0.23 deleterious(0.01) benign(0.001) TCGA-L5-A8NF-01 19 7166284 7166284 C T INSR Missense_Mutation p.R581Q 0.18 tolerated(0.55) benign(0.197) TCGA-L5-A8NF-01 19 9048498 9048498 G A MUC16 Silent p.L11045L 0.32 TCGA-L5-A8NF-01 19 9063073 9063073 T G MUC16 Missense_Mutation p.K8125Q 0.23 unknown(0) TCGA-L5-A8NF-01 1 108023641 108023641 C T NTNG1 3'UTR 0.57 TCGA-L5-A8NF-01 1 11080620 11080620 C T TARDBP Silent p.F226F 0.16 TCGA-L5-A8NF-01 1 11852371 11852371 G C MTHFR Nonsense_Mutation p.Y532* 0.26 TCGA-L5-A8NF-01 1 144816508 144816508 A C NBPF9 Missense_Mutation p.E213A 0.10 deleterious(0.01) benign(0.275) TCGA-L5-A8NF-01 1 145522905 145522905 C T PEX11B Nonsense_Mutation p.R256* 0.12 TCGA-L5-A8NF-01 1 149287967 149287967 G A RP11-403I13.8 RNA 0.06 TCGA-L5-A8NF-01 1 154042813 154042813 G T NUP210L Missense_Mutation p.F830L 0.33 tolerated(0.3) benign(0.049) TCGA-L5-A8NF-01 1 159272147 159272147 T C FCER1A 5'UTR 0.18 TCGA-L5-A8NF-01 1 17556668 17556668 C G PADI1 Missense_Mutation p.P340A 0.21 tolerated(0.44) possibly_damaging(0.905) TCGA-L5-A8NF-01 1 190195440 190195440 C - BRINP3 Frame_Shift_Del p.V245Yfs*16 0.12 TCGA-L5-A8NF-01 1 200828455 200828455 C T CAMSAP2 3'UTR 0.48 TCGA-L5-A8NF-01 1 20669680 20669680 C T VWA5B1 Missense_Mutation p.P807L 0.41 tolerated(0.15) benign(0.004) TCGA-L5-A8NF-01 1 22333434 22333434 C G CELA3A Silent p.A142A 0.11 TCGA-L5-A8NF-01 1 232172644 232172644 C T DISC1 3'UTR 0.20 TCGA-L5-A8NF-01 1 233394774 233394775 - CTCCC PCNXL2 Frame_Shift_Ins p.S278Rfs*8 0.25 TCGA-L5-A8NF-01 1 236192981 236192981 C T NID1 Missense_Mutation p.R536Q 0.42 tolerated(0.68) benign(0.007) TCGA-L5-A8NF-01 1 2420795 2420795 T C PLCH2 Missense_Mutation p.L435P 0.20 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NF-01 1 35229018 35229021 AAGT - GJB4 3'UTR 0.30 TCGA-L5-A8NF-01 1 41304249 41304249 G A KCNQ4 3'UTR 0.40 TCGA-L5-A8NF-01 1 46159886 46159886 T C TMEM69 3'UTR 0.31 TCGA-L5-A8NF-01 1 60073514 60073514 C A FGGY Missense_Mutation p.P315T 0.41 deleterious(0) probably_damaging(0.961) TCGA-L5-A8NF-01 1 71873192 71873192 G T NEGR1 Nonsense_Mutation p.Y334* 0.20 TCGA-L5-A8NF-01 1 8395635 8395635 G A SLC45A1 Missense_Mutation p.V528I 0.27 tolerated(0.95) benign(0.001) TCGA-L5-A8NF-01 1 89618084 89618084 C T GBP7 Silent p.E164E 0.29 TCGA-L5-A8NF-01 20 33096050 33096050 G T ITCH 3'Flank 0.29 TCGA-L5-A8NF-01 20 58567452 58567452 C T CDH26 Missense_Mutation p.P435S 0.15 deleterious(0) probably_damaging(0.959) TCGA-L5-A8NF-01 20 61511438 61511438 G A DIDO1 Missense_Mutation p.P1957L 0.10 possibly_damaging(0.764) TCGA-L5-A8NF-01 21 22710769 22710769 T A NCAM2 Missense_Mutation p.L320H 0.35 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NF-01 21 43717138 43717138 G A ABCG1 3'UTR 0.62 TCGA-L5-A8NF-01 21 47819581 47819581 T C PCNT Silent p.D1554D 0.89 TCGA-L5-A8NF-01 22 26829738 26829738 G A ASPHD2 Missense_Mutation p.V53M 0.76 tolerated_low_confidence(0.08) benign(0.29) TCGA-L5-A8NF-01 22 32889257 32889257 G C FBXO7 Missense_Mutation p.R378P 0.45 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NF-01 22 39112748 39112748 C T GTPBP1 Missense_Mutation p.R193C 0.35 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NF-01 22 46929774 46929774 C T CELSR1 Silent p.P1098P 0.57 TCGA-L5-A8NF-01 2 132287585 132287585 C G CCDC74A Intron 0.31 TCGA-L5-A8NF-01 2 140989424 140989436 CTTGTGAATAAAT - LRP1B 3'UTR 0.22 TCGA-L5-A8NF-01 2 152359866 152359866 G A NEB Silent p.S7944S 0.25 TCGA-L5-A8NF-01 2 164467538 164467538 C T FIGN Silent p.P268P 0.38 TCGA-L5-A8NF-01 2 166848274 166848274 C T SCN1A Silent p.P1837P 0.57 TCGA-L5-A8NF-01 2 168103321 168103321 G T XIRP2 Missense_Mutation p.D1807Y 0.17 probably_damaging(0.994) TCGA-L5-A8NF-01 2 209007444 209007444 G A CRYGB Missense_Mutation p.P149L 0.36 deleterious(0) probably_damaging(0.949) TCGA-L5-A8NF-01 2 223169364 223169364 G A CCDC140 3'UTR 0.49 TCGA-L5-A8NF-01 2 225657770 225657770 C G DOCK10 Missense_Mutation p.K1744N 0.07 deleterious_low_confidence(0.03) benign(0.004) TCGA-L5-A8NF-01 2 242758151 242758151 T C NEU4 Missense_Mutation p.V424A 0.19 deleterious(0.03) possibly_damaging(0.803) TCGA-L5-A8NF-01 2 50147953 50147953 G A NRXN1 3'UTR 0.33 TCGA-L5-A8NF-01 2 74642950 74642950 G A C2orf81 Silent p.P121P 0.35 TCGA-L5-A8NF-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.32 TCGA-L5-A8NF-01 3 10145867 10145867 G C FANCD2OS 3'UTR 0.18 TCGA-L5-A8NF-01 3 118619740 118619740 T A IGSF11 3'UTR 0.11 TCGA-L5-A8NF-01 3 119434721 119434721 C T MAATS1 Intron 0.22 TCGA-L5-A8NF-01 3 121178982 121178982 G A POLQ Missense_Mutation p.A2356V 0.43 deleterious(0.03) possibly_damaging(0.547) TCGA-L5-A8NF-01 3 150396288 150396288 T C FAM194A Missense_Mutation p.K389E 0.13 tolerated(0.44) benign(0.033) TCGA-L5-A8NF-01 3 151164323 151164323 G A IGSF10 Missense_Mutation p.S1149F 0.31 deleterious(0.01) possibly_damaging(0.707) TCGA-L5-A8NF-01 3 185300577 185300577 G A SENP2 5'Flank 0.17 TCGA-L5-A8NF-01 3 32578524 32578524 T C DYNC1LI1 Missense_Mutation p.I271V 0.58 tolerated(0.31) benign(0.196) TCGA-L5-A8NF-01 3 50137606 50137606 G A RBM5 Intron 0.38 TCGA-L5-A8NF-01 3 51349978 51349978 C T DOCK3 Silent p.T1055T 0.20 TCGA-L5-A8NF-01 3 52474808 52474808 C T SEMA3G Silent p.G320G 0.29 TCGA-L5-A8NF-01 3 62631400 62631400 G T CADPS Missense_Mutation p.P441Q 0.29 deleterious(0) possibly_damaging(0.804) TCGA-L5-A8NF-01 3 97617780 97617780 G A CRYBG3 Silent p.K637K 0.55 TCGA-L5-A8NF-01 4 114823556 114823556 T G ARSJ Missense_Mutation p.E558D 0.70 tolerated(0.23) benign(0.217) TCGA-L5-A8NF-01 4 265860 265860 G T ZNF732 Silent p.S262S 0.50 TCGA-L5-A8NF-01 4 42526846 42526846 G A ATP8A1 Nonsense_Mutation p.R581* 0.25 TCGA-L5-A8NF-01 4 48591842 48591842 T C FRYL Silent p.R520R 0.30 TCGA-L5-A8NF-01 4 70156482 70156482 G C UGT2B28 Silent p.S421S 0.25 TCGA-L5-A8NF-01 4 74719825 74719825 C T PF4V1 Missense_Mutation p.H101Y 0.24 tolerated(0.08) benign(0.303) TCGA-L5-A8NF-01 4 82126024 82126024 T A PRKG2 Nonsense_Mutation p.K60* 0.71 TCGA-L5-A8NF-01 4 8621087 8621087 C G CPZ Missense_Mutation p.P568A 0.17 deleterious(0.02) probably_damaging(0.96) TCGA-L5-A8NF-01 5 112346477 112346477 C T DCP2 Missense_Mutation p.R358W 0.45 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-L5-A8NF-01 5 127674677 127674677 G A FBN2 Silent p.C1140C 0.18 TCGA-L5-A8NF-01 5 135469656 135469656 A C SMAD5 Intron 0.18 TCGA-L5-A8NF-01 5 140557520 140557520 T C PCDHB8 5'UTR 0.14 TCGA-L5-A8NF-01 5 140788747 140788747 T A PCDHGB6 Silent p.G326G 0.28 TCGA-L5-A8NF-01 5 143854153 143854153 T G KCTD16 3'UTR 0.14 TCGA-L5-A8NF-01 5 149323979 149323979 G A PDE6A Silent p.C86C 0.17 TCGA-L5-A8NF-01 5 176899346 176899346 G A DBN1 5'UTR 0.29 TCGA-L5-A8NF-01 5 6312770 6312770 C G CTD-2324F15.2 RNA 0.18 TCGA-L5-A8NF-01 5 68715895 68715895 C A MARVELD2 Nonsense_Mutation p.S228* 0.35 TCGA-L5-A8NF-01 6 135784408 135784408 T C AHI1 Silent p.E262E 0.29 TCGA-L5-A8NF-01 6 165801869 165801869 T G PDE10A Missense_Mutation p.K577T 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NF-01 6 31239424 31239424 G C HLA-C Missense_Mutation p.R99G 0.14 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-L5-A8NF-01 6 31503104 31503104 G A DDX39B Intron 0.17 TCGA-L5-A8NF-01 6 33411523 33411523 C T SYNGAP1 Missense_Mutation p.P1065L 0.35 tolerated(0.06) possibly_damaging(0.475) TCGA-L5-A8NF-01 6 82458117 82458117 G A FAM46A 3'UTR 0.33 TCGA-L5-A8NF-01 7 113520081 113520081 A C PPP1R3A Missense_Mutation p.L356V 0.42 deleterious(0.04) probably_damaging(0.931) TCGA-L5-A8NF-01 7 119913839 119913839 G A KCND2 5'UTR 0.27 TCGA-L5-A8NF-01 7 136700814 136700814 C T CHRM2 Missense_Mutation p.A401V 0.19 deleterious(0.01) benign(0.065) TCGA-L5-A8NF-01 7 149484958 149484959 - G SSPO RNA 0.33 TCGA-L5-A8NF-01 7 34118668 34118668 C T BMPER Silent p.G426G 0.53 TCGA-L5-A8NF-01 7 87329844 87329844 G A RUNDC3B Missense_Mutation p.E133K 0.05 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NF-01 7 92099506 92099506 C A ERVW-1 Missense_Mutation p.A64S 0.05 tolerated(0.47) benign(0.39) TCGA-L5-A8NF-01 7 92734680 92734680 T A SAMD9 Missense_Mutation p.H244L 0.04 deleterious(0) possibly_damaging(0.86) TCGA-L5-A8NF-01 7 94295573 94295573 A G PEG10 3'UTR 0.07 TCGA-L5-A8NF-01 8 121293235 121293235 G C COL14A1 Missense_Mutation p.G1254A 0.07 deleterious(0) probably_damaging(0.983) TCGA-L5-A8NF-01 8 26614236 26614236 T G ADRA1A Intron 0.10 TCGA-L5-A8NF-01 8 2887031 2887031 G A CSMD1 Silent p.V2555V 0.27 TCGA-L5-A8NF-01 8 41566326 41566326 C T ANK1 Silent p.S689S 0.28 TCGA-L5-A8NF-01 8 82606431 82606431 C T SLC10A5 Silent p.R259R 0.31 TCGA-L5-A8NF-01 8 89050748 89050748 A - MMP16 3'UTR 0.29 TCGA-L5-A8NF-01 8 89339430 89339430 G A MMP16 Silent p.I2I 0.10 TCGA-L5-A8NF-01 9 101494839 101494839 C T ANKS6 3'UTR 0.06 TCGA-L5-A8NF-01 9 103348507 103348507 G A MURC Missense_Mutation p.R290K 0.16 tolerated(0.37) benign(0.011) TCGA-L5-A8NF-01 9 117093948 117093948 T G ORM2 Missense_Mutation p.F144V 0.12 tolerated(0.12) benign(0.023) TCGA-L5-A8NF-01 9 27950045 27950045 T C LINGO2 Missense_Mutation p.K209E 0.31 deleterious(0.02) benign(0.022) TCGA-L5-A8NF-01 9 33113158 33113158 C T B4GALT1 3'UTR 0.50 TCGA-L5-A8NF-01 9 75516073 75516073 G A ALDH1A1 3'UTR 0.18 TCGA-L5-A8NF-01 X 104463918 104463918 G A TEX13A Missense_Mutation p.P320S 0.82 tolerated(0.16) possibly_damaging(0.857) TCGA-L5-A8NF-01 X 105452018 105452019 - A MUM1L1 3'UTR 0.54 TCGA-L5-A8NF-01 X 132160963 132160963 C A USP26 Missense_Mutation p.G429V 0.77 tolerated(1) benign(0.007) TCGA-L5-A8NF-01 X 134987423 134987423 C G SAGE1 Missense_Mutation p.A109G 0.58 deleterious(0) benign(0.045) TCGA-L5-A8NF-01 X 3238108 3238108 A G MXRA5 Missense_Mutation p.F1873S 0.44 deleterious(0.01) benign(0.369) TCGA-L5-A8NF-01 X 47065781 47065781 G T UBA1 Nonsense_Mutation p.E626* 0.19 TCGA-L5-A8NF-01 X 64725849 64725849 T C ZC3H12B 3'UTR 1.00 TCGA-L5-A8NG-01 10 104416539 104416539 G A TRIM8 Missense_Mutation p.V362I 0.25 tolerated_low_confidence(0.58) benign(0.001) TCGA-L5-A8NG-01 10 125472815 125472815 T G CPXM2 RNA 0.27 TCGA-L5-A8NG-01 10 129904470 129904470 C T MKI67 Silent p.K1878K 0.25 TCGA-L5-A8NG-01 10 17195487 17195487 C T TRDMT1 Intron 0.24 TCGA-L5-A8NG-01 10 18254526 18254526 G A SLC39A12 Missense_Mutation p.V220I 0.20 tolerated(0.46) benign(0.071) TCGA-L5-A8NG-01 10 28151508 28151508 A G ARMC4 Missense_Mutation p.L885P 0.28 deleterious(0.04) probably_damaging(0.96) TCGA-L5-A8NG-01 10 37421265 37421265 A C ANKRD30A Missense_Mutation p.K147T 0.32 tolerated(0.25) benign(0.154) TCGA-L5-A8NG-01 10 43615130 43615130 G C RET Missense_Mutation p.M848I 0.11 tolerated(0.56) benign(0.069) TCGA-L5-A8NG-01 10 60562850 60562850 T C BICC1 Silent p.L677L 0.25 TCGA-L5-A8NG-01 10 61122392 61122392 G C FAM13C 5'Flank 0.41 TCGA-L5-A8NG-01 10 70930990 70930990 G A VPS26A Missense_Mutation p.E317K 0.12 tolerated_low_confidence(0.2) benign(0.004) TCGA-L5-A8NG-01 10 87407034 87407034 A C GRID1 Silent p.A706A 0.25 TCGA-L5-A8NG-01 10 96447929 96447929 T C CYP2C18 Missense_Mutation p.C127R 0.11 deleterious(0) benign(0.139) TCGA-L5-A8NG-01 10 97453624 97453624 C T TCTN3 Silent p.V11V 0.25 TCGA-L5-A8NG-01 10 98127931 98127931 G A TLL2 Missense_Mutation p.R988C 0.11 deleterious(0.03) benign(0.006) TCGA-L5-A8NG-01 11 1031851 1031853 GAC - MUC6 In_Frame_Del p.V106del 0.31 TCGA-L5-A8NG-01 11 1104232 1104232 G A MUC2 Missense_Mutation p.R2808Q 0.48 unknown(0) TCGA-L5-A8NG-01 11 20939754 20939754 C G NELL1 Missense_Mutation p.I210M 0.11 deleterious(0.01) possibly_damaging(0.757) TCGA-L5-A8NG-01 11 27679499 27679499 T G BDNF Missense_Mutation p.N287H 0.45 deleterious(0) possibly_damaging(0.893) TCGA-L5-A8NG-01 11 31312305 31312305 A T DCDC1 Silent p.S283S 0.16 TCGA-L5-A8NG-01 11 48239132 48239132 G A OR4B1 Missense_Mutation p.M257I 0.25 tolerated(0.14) benign(0.213) TCGA-L5-A8NG-01 11 55340455 55340455 T G OR4C16 Missense_Mutation p.I284M 0.73 deleterious(0) probably_damaging(0.968) TCGA-L5-A8NG-01 11 57995922 57995922 G A OR10Q1 Silent p.R142R 0.16 TCGA-L5-A8NG-01 11 60701169 60701169 C T TMEM132A Silent p.T505T 0.17 TCGA-L5-A8NG-01 11 62293282 62293282 A T AHNAK Silent p.V2869V 0.30 TCGA-L5-A8NG-01 11 68673634 68673634 C T IGHMBP2 Missense_Mutation p.R62W 0.42 deleterious(0) probably_damaging(0.987) TCGA-L5-A8NG-01 11 7071008 7071008 A C NLRP14 Missense_Mutation p.N744H 0.08 tolerated(0.05) benign(0.03) TCGA-L5-A8NG-01 11 87908582 87908582 G A RAB38 5'UTR 0.12 TCGA-L5-A8NG-01 11 94113381 94113381 G A GPR83 Silent p.P402P 0.17 TCGA-L5-A8NG-01 12 10167210 10167210 C T CLEC12B Silent p.S93S 0.25 TCGA-L5-A8NG-01 12 110511298 110511301 TTTG - C12orf76 5'UTR 0.32 TCGA-L5-A8NG-01 12 123434423 123434423 T C ABCB9 Missense_Mutation p.I253M 0.17 deleterious(0.04) benign(0.409) TCGA-L5-A8NG-01 12 123645738 123645738 C T MPHOSPH9 Missense_Mutation p.R957Q 0.18 tolerated(0.27) probably_damaging(0.999) TCGA-L5-A8NG-01 12 15095386 15095386 G A ARHGDIB 3'UTR 0.21 TCGA-L5-A8NG-01 12 3390494 3390494 C T TSPAN9 Missense_Mutation p.T188M 0.10 tolerated(0.09) possibly_damaging(0.553) TCGA-L5-A8NG-01 12 4870249 4870249 C T GALNT8 Silent p.A433A 0.21 TCGA-L5-A8NG-01 12 56431853 56431853 T C IKZF4 3'UTR 0.10 TCGA-L5-A8NG-01 12 57112579 57112579 G C NACA Intron 0.09 TCGA-L5-A8NG-01 12 78225219 78225219 A C NAV3 5'UTR 0.35 TCGA-L5-A8NG-01 12 89864263 89864263 C T POC1B Missense_Mutation p.G229S 0.46 tolerated(0.07) benign(0.045) TCGA-L5-A8NG-01 13 19748175 19748175 T G TUBA3C Missense_Mutation p.K394T 0.11 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-L5-A8NG-01 13 36801276 36801276 T C CCDC169 3'UTR 0.31 TCGA-L5-A8NG-01 14 104194146 104194146 C T ZFYVE21 Missense_Mutation p.R85W 0.15 deleterious(0.01) possibly_damaging(0.764) TCGA-L5-A8NG-01 14 105408919 105408919 T G AHNAK2 Missense_Mutation p.D4290A 0.10 possibly_damaging(0.852) TCGA-L5-A8NG-01 14 67648235 67648235 C T GPHN 3'UTR 0.21 TCGA-L5-A8NG-01 14 86091876 86091876 T G FLRT2 3'UTR 0.41 TCGA-L5-A8NG-01 14 95552892 95552892 T A DICER1 3'UTR 0.48 TCGA-L5-A8NG-01 14 99183561 99183561 A C C14orf177 Silent p.R110R 0.29 TCGA-L5-A8NG-01 15 22382738 22382738 A G OR4N4 Missense_Mutation p.K89R 0.24 tolerated(0.92) possibly_damaging(0.611) TCGA-L5-A8NG-01 15 25959185 25959185 C A ATP10A Missense_Mutation p.Q660H 0.24 tolerated(0.2) benign(0.014) TCGA-L5-A8NG-01 15 44952662 44952662 G A SPG11 Missense_Mutation p.A137V 0.14 tolerated(0.06) benign(0.003) TCGA-L5-A8NG-01 15 48054408 48054408 T C SEMA6D Missense_Mutation p.Y184H 0.27 deleterious(0) probably_damaging(1) TCGA-L5-A8NG-01 15 48435245 48435245 T G MYEF2 Missense_Mutation p.K555Q 0.18 deleterious(0.02) probably_damaging(0.927) TCGA-L5-A8NG-01 15 49917567 49917567 A C DTWD1 Missense_Mutation p.Y68S 0.15 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NG-01 16 2140000 2140000 G A PKD1 Missense_Mutation p.R4214C 0.17 benign(0.008) TCGA-L5-A8NG-01 16 22503048 22503048 C T SMG1P1 RNA 0.10 TCGA-L5-A8NG-01 16 5038251 5038251 C T SEC14L5 Silent p.R105R 0.21 TCGA-L5-A8NG-01 16 54317511 54317511 G T IRX3 3'UTR 0.17 TCGA-L5-A8NG-01 16 55854390 55854390 A C CES1 Missense_Mutation p.V232G 0.12 deleterious(0) probably_damaging(0.933) TCGA-L5-A8NG-01 16 72817472 72817472 T A ZFHX3 3'UTR 0.27 TCGA-L5-A8NG-01 16 72819485 72819485 G A ZFHX3 3'UTR 0.16 TCGA-L5-A8NG-01 16 87439953 87439955 AAA - ZCCHC14 3'UTR 0.17 TCGA-L5-A8NG-01 17 13504307 13504307 T C HS3ST3A1 Missense_Mutation p.Q47R 0.11 tolerated_low_confidence(0.44) benign(0) TCGA-L5-A8NG-01 17 16706720 16706720 C A CCDC144A 3'UTR 0.10 TCGA-L5-A8NG-01 17 18022798 18022798 C T MYO15A Silent p.G228G 0.33 TCGA-L5-A8NG-01 17 25635246 25635246 C A WSB1 Intron 0.06 TCGA-L5-A8NG-01 17 27027397 27027397 A C SUPT6H Missense_Mutation p.N1558T 0.15 tolerated(0.07) benign(0.135) TCGA-L5-A8NG-01 17 37331544 37331544 G A CACNB1 Missense_Mutation p.R567W 0.15 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-L5-A8NG-01 17 38241009 38241009 G A THRA Missense_Mutation p.E173K 0.29 tolerated(0.37) possibly_damaging(0.602) TCGA-L5-A8NG-01 17 39887793 39887793 G C HAP1 Missense_Mutation p.L341V 0.13 deleterious(0.05) possibly_damaging(0.567) TCGA-L5-A8NG-01 17 48695481 48695481 G A CACNA1G Missense_Mutation p.D1767N 0.51 deleterious(0.03) possibly_damaging(0.781) TCGA-L5-A8NG-01 17 72868242 72868242 G T FDXR Missense_Mutation p.F32L 0.62 tolerated(0.35) benign(0.002) TCGA-L5-A8NG-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.43 tolerated(0.11) benign(0.308) TCGA-L5-A8NG-01 17 7796665 7796665 G C CHD3 Missense_Mutation p.A250P 0.19 probably_damaging(0.991) TCGA-L5-A8NG-01 18 14479007 14479007 A C CXADRP3 RNA 0.53 TCGA-L5-A8NG-01 18 14542810 14542810 G A POTEC Silent p.S112S 0.07 TCGA-L5-A8NG-01 18 47518679 47518679 C T MYO5B Silent p.E245E 0.15 TCGA-L5-A8NG-01 18 56939785 56939785 G A RAX Silent p.V117V 0.14 TCGA-L5-A8NG-01 18 7037673 7037673 G A LAMA1 Silent p.G547G 0.15 TCGA-L5-A8NG-01 18 77659371 77659371 C T KCNG2 Missense_Mutation p.A319V 0.29 tolerated(0.37) benign(0.305) TCGA-L5-A8NG-01 19 15355177 15355177 C T BRD4 Missense_Mutation p.V816I 0.10 benign(0.103) TCGA-L5-A8NG-01 19 18192966 18192966 C T IL12RB1 Missense_Mutation p.R78Q 0.13 tolerated(0.06) possibly_damaging(0.885) TCGA-L5-A8NG-01 19 23318838 23318838 A G ZNF730 Silent p.K73K 0.19 TCGA-L5-A8NG-01 19 23836558 23836558 C G ZNF675 Missense_Mutation p.E393Q 0.13 deleterious(0.02) benign(0.42) TCGA-L5-A8NG-01 19 24310680 24310680 A G ZNF254 Silent p.G626G 0.15 TCGA-L5-A8NG-01 19 36050028 36050028 C T ATP4A Silent p.A374A 0.27 TCGA-L5-A8NG-01 19 36562584 36562584 C G WDR62 Missense_Mutation p.L337V 0.39 deleterious(0) probably_damaging(0.983) TCGA-L5-A8NG-01 19 36883755 36883755 T G ZFP82 Missense_Mutation p.H496P 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NG-01 19 42806151 42806151 T G PAFAH1B3 Missense_Mutation p.E40A 0.14 deleterious(0.01) possibly_damaging(0.598) TCGA-L5-A8NG-01 19 51169688 51169688 G A SHANK1 Silent p.G1843G 0.17 TCGA-L5-A8NG-01 19 51330365 51330365 C G KLK15 Missense_Mutation p.E84Q 0.15 tolerated(0.08) probably_damaging(0.957) TCGA-L5-A8NG-01 19 55686690 55686690 C A SYT5 Silent p.L186L 0.19 TCGA-L5-A8NG-01 19 7168031 7168031 A G INSR Missense_Mutation p.W520R 0.17 tolerated(1) benign(0.077) TCGA-L5-A8NG-01 19 9448586 9448586 T G ZNF559 Intron 0.30 TCGA-L5-A8NG-01 1 100335979 100335979 G A AGL Missense_Mutation p.E230K 0.21 tolerated(0.29) benign(0.005) TCGA-L5-A8NG-01 1 116380116 116380116 C A NHLH2 3'UTR 0.16 TCGA-L5-A8NG-01 1 152732632 152732632 A G KPRP Missense_Mutation p.S190G 0.15 tolerated(0.43) benign(0) TCGA-L5-A8NG-01 1 153177535 153177535 C T LELP1 3'UTR 0.29 TCGA-L5-A8NG-01 1 158584068 158584068 G C SPTA1 Missense_Mutation p.L2273V 0.27 deleterious(0) possibly_damaging(0.692) TCGA-L5-A8NG-01 1 161044500 161044500 C T PVRL4 Missense_Mutation p.G301S 0.15 tolerated(0.69) benign(0.003) TCGA-L5-A8NG-01 1 171254716 171254716 G A FMO1 3'UTR 0.29 TCGA-L5-A8NG-01 1 176668488 176668488 A G PAPPA2 Missense_Mutation p.D1000G 0.17 deleterious(0.05) benign(0.26) TCGA-L5-A8NG-01 1 185878509 185878509 T G HMCN1 Missense_Mutation p.V221G 0.21 probably_damaging(0.927) TCGA-L5-A8NG-01 1 192613467 192613467 G T RGS13 Translation_Start_Site p.M1? 0.20 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-L5-A8NG-01 1 196197421 196197421 T A KCNT2 Missense_Mutation p.E1114V 0.33 tolerated(0.28) benign(0.021) TCGA-L5-A8NG-01 1 196577475 196577475 T C KCNT2 5'UTR 0.28 TCGA-L5-A8NG-01 1 200942317 200942317 G C KIF21B 3'Flank 0.28 TCGA-L5-A8NG-01 1 230883352 230883352 T G CAPN9 Missense_Mutation p.L37R 0.33 deleterious(0.01) benign(0.314) TCGA-L5-A8NG-01 1 248308866 248308866 A G OR2M5 Silent p.K139K 0.31 TCGA-L5-A8NG-01 1 248437031 248437031 A T OR2T33 Missense_Mutation p.V29D 0.13 deleterious(0) benign(0.395) TCGA-L5-A8NG-01 1 62349918 62349918 C T INADL Missense_Mutation p.P990L 0.11 tolerated(0.76) benign(0.006) TCGA-L5-A8NG-01 1 72163744 72163744 G A NEGR1 Missense_Mutation p.A205V 0.15 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NG-01 1 75102058 75102058 G A C1orf173 Missense_Mutation p.P170L 0.17 tolerated(0.22) benign(0.067) TCGA-L5-A8NG-01 1 7724522 7724522 G A CAMTA1 Missense_Mutation p.G639R 0.09 deleterious_low_confidence(0.01) benign(0.006) TCGA-L5-A8NG-01 20 1617995 1617995 A C SIRPG Intron 0.16 TCGA-L5-A8NG-01 20 49575380 49575380 A G MOCS3 Translation_Start_Site p.M1? 0.47 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-L5-A8NG-01 20 57430664 57430664 G A GNAS Intron 0.24 TCGA-L5-A8NG-01 20 58645800 58645800 A G C20orf197 Missense_Mutation p.K73R 0.34 tolerated_low_confidence(0.09) possibly_damaging(0.486) TCGA-L5-A8NG-01 20 60791867 60791867 G A HRH3 Missense_Mutation p.S178F 0.27 deleterious(0) probably_damaging(0.93) TCGA-L5-A8NG-01 20 60882437 60882437 G A ADRM1 Silent p.G184G 0.09 TCGA-L5-A8NG-01 20 62422008 62422008 C T ZBTB46 Missense_Mutation p.V35M 0.30 deleterious(0) possibly_damaging(0.59) TCGA-L5-A8NG-01 21 19685373 19685373 G A TMPRSS15 Missense_Mutation p.T685M 0.19 tolerated(0.45) benign(0.017) TCGA-L5-A8NG-01 21 38460554 38460554 C T TTC3 Silent p.C82C 0.41 TCGA-L5-A8NG-01 21 46047294 46047294 C T KRTAP10-9 Missense_Mutation p.S69L 0.08 deleterious(0.01) unknown(0) TCGA-L5-A8NG-01 22 26074809 26074809 A C ADRBK2 Missense_Mutation p.K225T 0.29 deleterious(0) probably_damaging(0.968) TCGA-L5-A8NG-01 22 28144369 28144369 A T MN1 3'UTR 0.26 TCGA-L5-A8NG-01 22 41923138 41923138 C T POLR3H 3'UTR 0.42 TCGA-L5-A8NG-01 22 42032238 42032238 A G XRCC6 Missense_Mutation p.Q106R 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NG-01 2 116594126 116594126 A C DPP10 Missense_Mutation p.E702D 0.21 tolerated(0.97) benign(0.012) TCGA-L5-A8NG-01 2 11765431 11765431 G T GREB1 Missense_Mutation p.K1433N 0.19 tolerated(0.14) possibly_damaging(0.713) TCGA-L5-A8NG-01 2 125204470 125204470 T G CNTNAP5 Missense_Mutation p.F292V 0.24 tolerated(0.28) benign(0.31) TCGA-L5-A8NG-01 2 130902262 130902262 G A CCDC74B Intron 0.32 TCGA-L5-A8NG-01 2 133540288 133540288 T C NCKAP5 Missense_Mutation p.S1366G 0.36 deleterious(0.02) benign(0.019) TCGA-L5-A8NG-01 2 170048427 170048427 C T LRP2 Missense_Mutation p.D2983N 0.21 probably_damaging(1) TCGA-L5-A8NG-01 2 178299116 178299116 G C AGPS Missense_Mutation p.V138L 0.10 tolerated(0.4) benign(0.001) TCGA-L5-A8NG-01 2 182795294 182795294 C G SSFA2 3'UTR 0.08 TCGA-L5-A8NG-01 2 185804008 185804008 A G ZNF804A 3'UTR 0.10 TCGA-L5-A8NG-01 2 200790063 200790063 G C C2orf69 Missense_Mutation p.K204N 0.09 tolerated(0.37) benign(0.053) TCGA-L5-A8NG-01 2 233243909 233243909 G A ALPP Splice_Site p.X65_splice 0.18 TCGA-L5-A8NG-01 2 241808193 241808193 C G AGXT 5'UTR 0.20 TCGA-L5-A8NG-01 2 26101061 26101064 TGCC AG ASXL2 Frame_Shift_Del p.G10Lfs*22 0.10 TCGA-L5-A8NG-01 2 40339486 40339486 C A SLC8A1 3'Flank 0.08 TCGA-L5-A8NG-01 2 40339519 40339519 A G SLC8A1 3'Flank 0.08 TCGA-L5-A8NG-01 2 68765198 68765198 C T APLF Silent p.G333G 0.48 TCGA-L5-A8NG-01 2 71415460 71415460 T C PAIP2B 3'UTR 0.42 TCGA-L5-A8NG-01 2 89326812 89326812 G A IGKV3-11 Silent p.L67L 0.05 TCGA-L5-A8NG-01 2 90077799 90077799 T C IGKV3D-20 Missense_Mutation p.L8P 0.34 deleterious(0.01) benign(0.084) TCGA-L5-A8NG-01 3 1425020 1425020 T C CNTN6 Silent p.S815S 0.11 TCGA-L5-A8NG-01 3 156978859 156978859 T C VEPH1 3'UTR 0.08 TCGA-L5-A8NG-01 3 169485221 169485221 C T ACTRT3 Silent p.%3D 0.36 TCGA-L5-A8NG-01 3 178968904 178968904 A C KCNMB3 5'UTR 0.17 TCGA-L5-A8NG-01 3 46416309 46416309 C A CCR5 3'UTR 0.14 TCGA-L5-A8NG-01 3 55543970 55543970 A C ERC2 3'UTR 0.44 TCGA-L5-A8NG-01 3 97367155 97367155 A C EPHA6 Intron 0.24 TCGA-L5-A8NG-01 3 97744516 97744516 C T GABRR3 RNA 0.11 TCGA-L5-A8NG-01 4 122250641 122250641 T G QRFPR Missense_Mutation p.K375T 0.42 tolerated(0.32) benign(0.001) TCGA-L5-A8NG-01 4 156137995 156137995 T G NPY2R 3'UTR 0.34 TCGA-L5-A8NG-01 4 156849542 156849542 T C CTSO Missense_Mutation p.S293G 0.30 tolerated(0.21) benign(0.158) TCGA-L5-A8NG-01 4 170913139 170913139 C A MFAP3L Missense_Mutation p.R207L 0.33 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NG-01 4 41985681 41985681 C A DCAF4L1 3'UTR 0.50 TCGA-L5-A8NG-01 4 6323094 6323094 G T PPP2R2C 3'UTR 0.19 TCGA-L5-A8NG-01 4 99342491 99342491 G A RAP1GDS1 Silent p.V463V 0.24 TCGA-L5-A8NG-01 5 111494139 111494139 C A EPB41L4A 3'Flank 0.25 TCGA-L5-A8NG-01 5 140306543 140306543 C T PCDHAC1 Silent p.L22L 0.21 TCGA-L5-A8NG-01 5 159437569 159437569 G A TTC1 Missense_Mutation p.E12K 0.15 deleterious_low_confidence(0.01) benign(0.309) TCGA-L5-A8NG-01 5 169435601 169435601 A C DOCK2 Missense_Mutation p.K1058T 0.32 deleterious(0) possibly_damaging(0.889) TCGA-L5-A8NG-01 5 169702853 169702853 T G LCP2 Missense_Mutation p.K67T 0.32 deleterious(0) possibly_damaging(0.639) TCGA-L5-A8NG-01 5 170597179 170597179 C T RANBP17 Missense_Mutation p.H586Y 0.29 tolerated(0.83) benign(0.188) TCGA-L5-A8NG-01 5 172563415 172563415 A T CREBRF 3'UTR 0.14 TCGA-L5-A8NG-01 5 68565057 68565057 A G CDK7 Silent p.S217S 0.15 TCGA-L5-A8NG-01 6 122743317 122743317 G T HSF2 Missense_Mutation p.G235V 0.17 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NG-01 6 135787092 135787092 C A AHI1 Missense_Mutation p.E203D 0.12 tolerated(0.06) probably_damaging(0.99) TCGA-L5-A8NG-01 6 24566912 24566912 G A KIAA0319 Silent p.S735S 0.17 TCGA-L5-A8NG-01 6 26045967 26045968 TG - HIST1H3C Frame_Shift_Del p.C111Rfs*5 0.58 TCGA-L5-A8NG-01 6 26509198 26509198 C T BTN1A1 Silent p.F459F 0.12 TCGA-L5-A8NG-01 6 32940349 32940349 C T BRD2 5'UTR 0.24 TCGA-L5-A8NG-01 6 38998217 38998217 G A DNAH8 3'UTR 0.06 TCGA-L5-A8NG-01 6 52363598 52363598 T A TRAM2 3'UTR 0.16 TCGA-L5-A8NG-01 6 66200587 66200587 T C EYS Silent p.S254S 0.38 TCGA-L5-A8NG-01 6 72967970 72967970 T C RIMS1 Silent p.N971N 0.46 TCGA-L5-A8NG-01 7 100238621 100238621 C T TFR2 Silent p.T88T 0.10 TCGA-L5-A8NG-01 7 100253447 100253447 G A ACTL6B Silent p.Y27Y 0.10 TCGA-L5-A8NG-01 7 100490296 100490296 C T ACHE Silent p.L404L 0.13 TCGA-L5-A8NG-01 7 110765079 110765079 A C LRRN3 3'UTR 0.19 TCGA-L5-A8NG-01 7 127729559 127729559 G A SND1 Missense_Mutation p.A813T 0.17 deleterious(0.05) benign(0.088) TCGA-L5-A8NG-01 7 151851097 151851097 C A KMT2C Nonsense_Mutation p.E4092* 0.19 TCGA-L5-A8NG-01 7 157959749 157959749 T C PTPRN2 Missense_Mutation p.S262G 0.15 tolerated(0.27) benign(0) TCGA-L5-A8NG-01 7 19156445 19156445 T G TWIST1 Missense_Mutation p.E167A 0.28 deleterious(0.03) benign(0.05) TCGA-L5-A8NG-01 7 64451572 64451572 G A ERV3-1 3'UTR 0.17 TCGA-L5-A8NG-01 7 71135008 71135008 A C WBSCR17 Missense_Mutation p.S440R 0.27 tolerated(1) benign(0) TCGA-L5-A8NG-01 7 76099721 76099721 C A DTX2 5'UTR 0.18 TCGA-L5-A8NG-01 7 81593645 81593645 T A CACNA2D1 Missense_Mutation p.S869C 0.33 tolerated(0.19) benign(0.015) TCGA-L5-A8NG-01 7 82595489 82595489 A C PCLO Silent p.A1205A 0.23 TCGA-L5-A8NG-01 8 106646475 106646475 A C ZFPM2 Missense_Mutation p.K141T 0.29 deleterious(0.01) possibly_damaging(0.882) TCGA-L5-A8NG-01 8 11995085 11995085 G A USP17L2 Silent p.G395G 0.09 TCGA-L5-A8NG-01 8 145060335 145060335 G C PARP10 Silent p.P23P 0.11 TCGA-L5-A8NG-01 8 145060484 145060484 C T PARP10 Intron 0.07 TCGA-L5-A8NG-01 8 1624706 1624706 C T DLGAP2 Missense_Mutation p.T657M 0.24 deleterious(0.02) probably_damaging(0.969) TCGA-L5-A8NG-01 8 18392965 18392965 A T PSD3 3'UTR 0.38 TCGA-L5-A8NG-01 8 23699815 23699815 C T STC1 3'UTR 0.20 TCGA-L5-A8NG-01 8 23702234 23702234 C G STC1 3'UTR 0.21 TCGA-L5-A8NG-01 8 66631622 66631622 C T PDE7A Nonsense_Mutation p.W451* 0.35 TCGA-L5-A8NG-01 8 69730622 69730622 G A C8orf34 3'UTR 0.27 TCGA-L5-A8NG-01 8 71053578 71053578 G A NCOA2 Nonsense_Mutation p.Q957* 0.27 TCGA-L5-A8NG-01 8 72966069 72966069 C A TRPA1 Silent p.A521A 0.34 TCGA-L5-A8NG-01 8 74941305 74941305 T A LY96 3'UTR 0.33 TCGA-L5-A8NG-01 8 97797433 97797433 T G CPQ Missense_Mutation p.V103G 0.23 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NG-01 9 100077198 100077198 A G CCDC180 Silent p.E299E 0.40 TCGA-L5-A8NG-01 9 113170241 113170241 C G SVEP1 Missense_Mutation p.D2547H 0.27 benign(0.049) TCGA-L5-A8NG-01 9 119188127 119188127 C T ASTN2 3'UTR 0.20 TCGA-L5-A8NG-01 9 131403128 131403128 C T WDR34 Missense_Mutation p.V93M 0.19 tolerated(0.1) benign(0.006) TCGA-L5-A8NG-01 9 131492553 131492553 G A ZER1 3'UTR 0.08 TCGA-L5-A8NG-01 9 138395457 138395457 G A MRPS2 Silent p.T123T 0.38 TCGA-L5-A8NG-01 9 138557718 138557718 T C LCN9 Missense_Mutation p.S163P 0.32 tolerated(0.27) benign(0.392) TCGA-L5-A8NG-01 9 21970901 21970901 C T CDKN2A Missense_Mutation p.E153K 0.37 tolerated_low_confidence(0.09) benign(0.019) TCGA-L5-A8NG-01 9 33441179 33441180 - T AQP3 3'UTR 0.24 TCGA-L5-A8NG-01 9 34491532 34491532 T G DNAI1 Missense_Mutation p.F221V 0.11 tolerated(0.05) benign(0.318) TCGA-L5-A8NG-01 9 34725945 34725945 T C FAM205A Missense_Mutation p.Q431R 0.40 deleterious(0) probably_damaging(0.954) TCGA-L5-A8NG-01 9 43625456 43625456 G T SPATA31A6 Missense_Mutation p.S1077R 0.17 tolerated(0.31) benign(0.034) TCGA-L5-A8NG-01 9 8314800 8314800 A C PTPRD 3'UTR 0.47 TCGA-L5-A8NG-01 9 99699643 99699643 G C NUTM2G Missense_Mutation p.S427T 0.10 deleterious(0.03) benign(0.256) TCGA-L5-A8NG-01 X 105969928 105969928 G A RNF128 5'UTR 0.18 TCGA-L5-A8NG-01 X 119513633 119513633 G T ATP1B4 3'UTR 0.19 TCGA-L5-A8NG-01 X 128633806 128633806 A C SMARCA1 Missense_Mutation p.F394V 0.27 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NG-01 X 137939763 137939763 T G FGF13 Missense_Mutation p.K43T 0.64 deleterious_low_confidence(0.01) benign(0.001) TCGA-L5-A8NG-01 X 148039913 148039913 A T AFF2 Missense_Mutation p.E872V 0.19 deleterious(0.01) probably_damaging(0.958) TCGA-L5-A8NG-01 X 1584751 1584751 C T P2RY8 Missense_Mutation p.R234H 0.21 tolerated(0.09) possibly_damaging(0.864) TCGA-L5-A8NG-01 X 43702992 43702992 A C MAOB Missense_Mutation p.L22R 0.50 deleterious(0) possibly_damaging(0.897) TCGA-L5-A8NG-01 X 44941852 44941852 A T KDM6A Missense_Mutation p.D1059V 0.13 tolerated(0.05) benign(0.018) TCGA-L5-A8NG-01 X 51644891 51644891 C T MAGED1 Silent p.F790F 0.59 TCGA-L5-A8NG-01 X 57937007 57937007 C T ZXDA 5'UTR 0.31 TCGA-L5-A8NG-01 X 73067337 73067337 G A XIST RNA 0.30 TCGA-L5-A8NG-01 X 75004002 75004002 T G MAGEE2 Missense_Mutation p.K295N 0.63 deleterious(0.01) probably_damaging(0.991) TCGA-L5-A8NG-01 X 75650471 75650471 A C MAGEE1 Missense_Mutation p.E716D 0.44 deleterious(0.01) probably_damaging(0.967) TCGA-L5-A8NH-01 10 115609026 115609026 T C DCLRE1A Missense_Mutation p.D613G 0.10 deleterious(0.01) benign(0.206) TCGA-L5-A8NH-01 10 132915087 132915087 A G TCERG1L Missense_Mutation p.F457S 0.56 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NH-01 10 25314657 25314657 C A THNSL1 3'UTR 0.27 TCGA-L5-A8NH-01 10 28034669 28034669 C T MKX 5'UTR 0.39 TCGA-L5-A8NH-01 10 75877901 75877901 G T VCL Missense_Mutation p.V1127F 0.33 deleterious(0) possibly_damaging(0.709) TCGA-L5-A8NH-01 11 120827629 120827629 G A GRIK4 Missense_Mutation p.R614H 0.26 deleterious(0.02) possibly_damaging(0.771) TCGA-L5-A8NH-01 11 31263095 31263095 C A DCDC1 Nonsense_Mutation p.G375* 0.13 TCGA-L5-A8NH-01 11 32421555 32421555 G A WT1 Missense_Mutation p.T346M 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.489) TCGA-L5-A8NH-01 11 3720357 3720357 T C NUP98 Missense_Mutation p.T1322A 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-L5-A8NH-01 11 4673819 4673819 T A OR51E1 Silent p.P21P 0.14 TCGA-L5-A8NH-01 11 48346874 48346874 G T OR4C3 Nonsense_Mutation p.G128* 0.17 TCGA-L5-A8NH-01 11 56043714 56043714 T C OR5T1 Silent p.S200S 0.27 TCGA-L5-A8NH-01 11 61277386 61277386 G A LRRC10B 3'UTR 0.25 TCGA-L5-A8NH-01 11 6635718 6635718 A G TPP1 3'UTR 0.20 TCGA-L5-A8NH-01 11 74500713 74500713 A G RNF169 Missense_Mutation p.E182G 0.33 deleterious(0) possibly_damaging(0.895) TCGA-L5-A8NH-01 11 89075351 89075351 C T NOX4 Missense_Mutation p.D410N 0.10 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NH-01 12 100169375 100169375 T C ANKS1B Silent p.Q304Q 0.15 TCGA-L5-A8NH-01 12 108589643 108589643 T G WSCD2 Missense_Mutation p.F12V 0.28 deleterious(0.02) benign(0.21) TCGA-L5-A8NH-01 12 15068588 15068588 T G ERP27 Missense_Mutation p.K203N 0.30 deleterious(0.01) probably_damaging(0.911) TCGA-L5-A8NH-01 12 18801063 18801063 G A PIK3C2G 3'UTR 0.50 TCGA-L5-A8NH-01 12 21472419 21472419 C A SLCO1A2 Intron 0.33 TCGA-L5-A8NH-01 12 21636458 21636458 T G RECQL Missense_Mutation p.L184F 0.15 tolerated(0.34) benign(0.398) TCGA-L5-A8NH-01 12 6798342 6798342 C G ZNF384 Intron 0.27 TCGA-L5-A8NH-01 12 72666653 72666653 G A TRHDE Missense_Mutation p.R32H 0.40 deleterious_low_confidence(0) possibly_damaging(0.77) TCGA-L5-A8NH-01 12 9094036 9094036 T A PHC1 3'Flank 0.12 TCGA-L5-A8NH-01 13 20398582 20398582 T A ZMYM5 3'UTR 0.47 TCGA-L5-A8NH-01 13 28712978 28712979 GA - PAN3 Frame_Shift_Del p.E62Gfs*7 0.32 TCGA-L5-A8NH-01 13 37401814 37401814 T C RFXAP Missense_Mutation p.L248S 0.36 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-L5-A8NH-01 13 58208354 58208354 G A PCDH17 Silent p.G558G 0.31 TCGA-L5-A8NH-01 13 78492294 78492294 A C EDNRB Missense_Mutation p.L229V 0.32 deleterious(0.01) possibly_damaging(0.614) TCGA-L5-A8NH-01 14 106173645 106173645 C T IGHA1 Missense_Mutation p.G308R 0.36 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NH-01 14 23441882 23441882 C T AJUBA 3'UTR 0.17 TCGA-L5-A8NH-01 14 65237816 65237816 A G SPTB Missense_Mutation p.L1862P 0.33 deleterious(0) probably_damaging(1) TCGA-L5-A8NH-01 14 86094057 86094057 A C FLRT2 3'UTR 0.07 TCGA-L5-A8NH-01 15 22473222 22473222 C G IGHV4OR15-8 Missense_Mutation p.V17L 0.25 deleterious_low_confidence(0) benign(0.365) TCGA-L5-A8NH-01 15 80216554 80216554 G T C15ORF37 3'UTR 0.60 TCGA-L5-A8NH-01 15 89422500 89422500 C A HAPLN3 Missense_Mutation p.G165V 0.60 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NH-01 16 15758647 15758647 C T NDE1 Silent p.S4S 0.36 TCGA-L5-A8NH-01 16 20084821 20084821 C T GPR139 Missense_Mutation p.G40S 0.43 deleterious(0.03) benign(0.003) TCGA-L5-A8NH-01 16 2338177 2338177 C T ABCA3 Missense_Mutation p.D952N 0.46 tolerated(0.24) benign(0.09) TCGA-L5-A8NH-01 16 23703362 23703362 C T ERN2 Silent p.P814P 0.37 TCGA-L5-A8NH-01 16 25172521 25172521 A G LCMT1 Missense_Mutation p.T189A 0.33 tolerated(0.51) benign(0) TCGA-L5-A8NH-01 16 30392561 30392561 G A SEPT1 Missense_Mutation p.R154W 0.17 possibly_damaging(0.855) TCGA-L5-A8NH-01 16 30393468 30393470 TGA - SEPT1 In_Frame_Del p.I47del 0.17 TCGA-L5-A8NH-01 16 34712338 34712338 T C RP11-80F22.9 RNA 0.24 TCGA-L5-A8NH-01 16 48220864 48220864 T C ABCC11 Missense_Mutation p.Q1024R 0.26 tolerated(1) benign(0.006) TCGA-L5-A8NH-01 16 76592524 76592524 A G CNTNAP4 Missense_Mutation p.S1218G 0.12 tolerated(0.33) benign(0.008) TCGA-L5-A8NH-01 16 78065948 78065948 A G CLEC3A 3'UTR 0.09 TCGA-L5-A8NH-01 17 11573044 11573044 C A DNAH9 Missense_Mutation p.L1096M 0.18 possibly_damaging(0.69) TCGA-L5-A8NH-01 17 11840831 11840831 G A DNAH9 Missense_Mutation p.E4218K 0.19 benign(0.33) TCGA-L5-A8NH-01 17 13503953 13503953 G A HS3ST3A1 Missense_Mutation p.T165M 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NH-01 17 21731555 21731555 C A UBBP4 Missense_Mutation p.D210E 0.09 tolerated(0.06) benign(0.3) TCGA-L5-A8NH-01 17 25640105 25640105 A T WSB1 3'UTR 0.64 TCGA-L5-A8NH-01 17 39216158 39216158 G A KRTAP2-3 Missense_Mutation p.R49C 0.20 tolerated(0.11) probably_damaging(0.997) TCGA-L5-A8NH-01 17 39884552 39884552 C T HAP1 Silent p.S367S 0.18 TCGA-L5-A8NH-01 17 42428797 42428797 C T GRN Missense_Mutation p.S301L 0.13 deleterious(0) benign(0.271) TCGA-L5-A8NH-01 17 55195798 55195798 A C AKAP1 Missense_Mutation p.T853P 0.29 deleterious(0.01) possibly_damaging(0.514) TCGA-L5-A8NH-01 17 73262796 73262796 G A MIF4GD 3'UTR 0.20 TCGA-L5-A8NH-01 17 7475198 7475198 T A SENP3 Intron 0.22 TCGA-L5-A8NH-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.60 deleterious(0) probably_damaging(1) TCGA-L5-A8NH-01 18 65179637 65179637 C A DSEL Missense_Mutation p.A747S 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-L5-A8NH-01 19 10747424 10747424 G A SLC44A2 Missense_Mutation p.R528Q 0.08 deleterious(0.03) benign(0.067) TCGA-L5-A8NH-01 19 3381984 3381984 C T NFIC Missense_Mutation p.P102L 0.53 deleterious(0) benign(0.3) TCGA-L5-A8NH-01 19 4183389 4183389 A G ANKRD24 5'UTR 0.08 TCGA-L5-A8NH-01 19 44352455 44352455 G T ZNF283 Nonsense_Mutation p.E568* 0.72 TCGA-L5-A8NH-01 19 46915557 46915557 G A CCDC8 Missense_Mutation p.R171C 0.44 probably_damaging(0.975) TCGA-L5-A8NH-01 19 4703929 4703929 G A DPP9 Silent p.G246G 0.60 TCGA-L5-A8NH-01 19 47569839 47569839 G A ZC3H4 Missense_Mutation p.P1229L 0.68 unknown(0) TCGA-L5-A8NH-01 19 50180545 50180545 C T PRMT1 Missense_Mutation p.A3V 0.06 deleterious_low_confidence(0) benign(0.052) TCGA-L5-A8NH-01 19 52272080 52272080 C T FPR2 Missense_Mutation p.R57C 0.06 deleterious(0.04) benign(0.159) TCGA-L5-A8NH-01 19 54140176 54140176 A C DPRX Missense_Mutation p.Q170H 0.71 deleterious(0.03) possibly_damaging(0.85) TCGA-L5-A8NH-01 19 56206211 56206211 A G EPN1 Missense_Mutation p.T548A 0.06 tolerated(0.37) benign(0.062) TCGA-L5-A8NH-01 19 57335020 57335020 T A PEG3 Missense_Mutation p.D141V 0.64 deleterious(0) possibly_damaging(0.77) TCGA-L5-A8NH-01 19 8551084 8551084 G C HNRNPM Missense_Mutation p.R591P 0.14 deleterious(0.01) possibly_damaging(0.688) TCGA-L5-A8NH-01 19 881662 881662 G A MED16 Silent p.N346N 0.65 TCGA-L5-A8NH-01 19 9491694 9491694 G T ZNF177 Missense_Mutation p.E229D 0.72 deleterious(0.04) probably_damaging(0.981) TCGA-L5-A8NH-01 1 104112709 104112709 C G AMY2B Intron 0.11 TCGA-L5-A8NH-01 1 110256361 110256361 G A GSTM5 Missense_Mutation p.R113K 0.10 tolerated(0.13) benign(0.04) TCGA-L5-A8NH-01 1 115221045 115221045 G A AMPD1 Missense_Mutation p.T367I 0.17 tolerated(0.07) benign(0.008) TCGA-L5-A8NH-01 1 117311133 117311133 G A CD2 Missense_Mutation p.G262S 0.16 tolerated(0.79) benign(0.014) TCGA-L5-A8NH-01 1 152191913 152191913 G A HRNR Missense_Mutation p.S731F 0.17 unknown(0) TCGA-L5-A8NH-01 1 155013913 155013913 C A DCST1 Missense_Mutation p.S191Y 0.20 deleterious(0) possibly_damaging(0.764) TCGA-L5-A8NH-01 1 160394067 160394067 G A VANGL2 Silent p.T433T 0.23 TCGA-L5-A8NH-01 1 167024315 167024315 G A GPA33 Missense_Mutation p.A242V 0.29 tolerated(0.12) probably_damaging(0.998) TCGA-L5-A8NH-01 1 169823906 169823907 - GA SCYL3 Frame_Shift_Ins p.Q559Pfs*21 0.14 TCGA-L5-A8NH-01 1 17083605 17083605 A G MST1L RNA 0.26 TCGA-L5-A8NH-01 1 171492410 171492410 G A PRRC2C Missense_Mutation p.R293H 0.20 unknown(0) TCGA-L5-A8NH-01 1 185266556 185266556 T A IVNS1ABP 3'UTR 0.73 TCGA-L5-A8NH-01 1 196459008 196459008 T A KCNT2 Missense_Mutation p.I79F 0.57 tolerated(0.15) benign(0.189) TCGA-L5-A8NH-01 1 210796984 210796984 A G HHAT Missense_Mutation p.K455E 0.19 tolerated(0.08) benign(0.011) TCGA-L5-A8NH-01 1 2286831 2286831 C T MORN1 Intron 0.33 TCGA-L5-A8NH-01 1 244572508 244572508 T A ADSS 3'UTR 0.09 TCGA-L5-A8NH-01 1 244872098 244872098 G A DESI2 3'UTR 0.12 TCGA-L5-A8NH-01 1 26185816 26185816 G A AUNIP Silent p.C11C 0.15 TCGA-L5-A8NH-01 1 31438993 31438993 G A PUM1 Missense_Mutation p.A641V 0.24 tolerated(0.22) benign(0.276) TCGA-L5-A8NH-01 1 36291647 36291647 C A AGO4 Missense_Mutation p.T249N 0.09 tolerated(0.08) probably_damaging(0.982) TCGA-L5-A8NH-01 1 36639028 36639028 C T MAP7D1 Missense_Mutation p.R230C 0.23 probably_damaging(0.99) TCGA-L5-A8NH-01 1 57431535 57431535 G T C8B Silent p.G29G 0.17 TCGA-L5-A8NH-01 1 89520498 89520498 C G GBP1 Missense_Mutation p.R511T 0.13 tolerated(0.09) benign(0.188) TCGA-L5-A8NH-01 1 91403316 91403316 T G ZNF644 Silent p.S1138S 0.23 TCGA-L5-A8NH-01 20 54575877 54575878 - A CBLN4 Frame_Shift_Ins p.T107Hfs*22 0.17 TCGA-L5-A8NH-01 20 57282220 57282220 G A NPEPL1 Silent p.A288A 0.19 TCGA-L5-A8NH-01 20 57607364 57607376 TCAGCCGGGCGGT - ATP5E 5'UTR 0.49 TCGA-L5-A8NH-01 20 57768421 57768421 C T ZNF831 Missense_Mutation p.P783S 0.61 tolerated(0.47) benign(0.063) TCGA-L5-A8NH-01 21 10914363 10914363 C T TPTE Silent p.S452S 0.19 TCGA-L5-A8NH-01 21 36162688 36162688 A T RUNX1 3'UTR 0.30 TCGA-L5-A8NH-01 22 24584195 24584195 C T SUSD2 Missense_Mutation p.R782C 0.27 deleterious(0.03) possibly_damaging(0.719) TCGA-L5-A8NH-01 22 41972630 41972630 T C CSDC2 3'UTR 0.29 TCGA-L5-A8NH-01 22 43619183 43619183 C A SCUBE1 Missense_Mutation p.R416L 0.34 tolerated(0.05) benign(0.049) TCGA-L5-A8NH-01 2 120714494 120714494 C G PTPN4 Nonsense_Mutation p.Y685* 0.04 TCGA-L5-A8NH-01 2 152521956 152521956 A C NEB Missense_Mutation p.I1710S 0.42 possibly_damaging(0.831) TCGA-L5-A8NH-01 2 179475827 179475827 G T TTN Missense_Mutation p.A17010E 0.42 TCGA-L5-A8NH-01 2 183843562 183843562 C T NCKAP1 Missense_Mutation p.V481I 0.10 tolerated(0.07) benign(0.26) TCGA-L5-A8NH-01 2 215815790 215815790 A C ABCA12 Missense_Mutation p.F2222C 0.09 tolerated(0.2) benign(0.003) TCGA-L5-A8NH-01 2 225662608 225662608 T C DOCK10 Missense_Mutation p.N1529D 0.17 tolerated(0.06) benign(0.115) TCGA-L5-A8NH-01 2 233409225 233409225 G A CHRNG Missense_Mutation p.R395H 0.24 deleterious(0.03) benign(0.066) TCGA-L5-A8NH-01 2 242681948 242681948 C T D2HGDH Missense_Mutation p.T150I 0.16 deleterious(0.05) possibly_damaging(0.733) TCGA-L5-A8NH-01 2 242815414 242815414 G A CXXC11 Silent p.P569P 0.10 TCGA-L5-A8NH-01 2 24342500 24342500 G T PFN4 Missense_Mutation p.T103N 0.41 deleterious(0) probably_damaging(0.984) TCGA-L5-A8NH-01 2 38216731 38216731 A C RMDN2 Missense_Mutation p.N458T 0.10 deleterious(0.01) possibly_damaging(0.758) TCGA-L5-A8NH-01 2 47387514 47387514 T G CALM2 3'UTR 0.27 TCGA-L5-A8NH-01 2 55775801 55775801 T C SMEK2 3'UTR 0.10 TCGA-L5-A8NH-01 2 74649471 74649471 G T WDR54 Missense_Mutation p.G64V 0.38 tolerated(0.25) benign(0.037) TCGA-L5-A8NH-01 3 129694657 129694657 G A TRH 5'UTR 0.33 TCGA-L5-A8NH-01 3 169663070 169663070 A G RP11-379K17.4 RNA 0.28 TCGA-L5-A8NH-01 3 19295323 19295323 A C KCNH8 Missense_Mutation p.K85T 0.31 deleterious(0.05) benign(0.396) TCGA-L5-A8NH-01 3 423958 423958 T G CHL1 Missense_Mutation p.I658S 0.13 deleterious(0.02) benign(0.127) TCGA-L5-A8NH-01 3 53796067 53796067 G A CACNA1D Missense_Mutation p.V1297I 0.33 deleterious(0.01) probably_damaging(0.994) TCGA-L5-A8NH-01 3 54958682 54958682 C T LRTM1 Missense_Mutation p.G190S 0.50 tolerated(0.14) benign(0.309) TCGA-L5-A8NH-01 3 89530699 89530699 A C EPHA3 3'UTR 0.62 TCGA-L5-A8NH-01 3 9100157 9100157 C T SRGAP3 Splice_Site p.X268_splice 0.24 TCGA-L5-A8NH-01 3 9426296 9426296 T C THUMPD3 Missense_Mutation p.I483T 0.35 deleterious(0.04) benign(0.003) TCGA-L5-A8NH-01 3 97185278 97185278 G C EPHA6 Intron 0.16 TCGA-L5-A8NH-01 3 9975157 9975157 G A IL17RC Silent p.A752A 0.36 TCGA-L5-A8NH-01 4 100205628 100205628 C T ADH1A Silent p.S165S 0.70 TCGA-L5-A8NH-01 4 114275201 114275201 G A ANK2 Silent p.A1809A 0.20 TCGA-L5-A8NH-01 4 166929126 166929126 T G TLL1 Silent p.P281P 0.20 TCGA-L5-A8NH-01 4 188924482 188924482 A T ZFP42 Missense_Mutation p.K174M 0.74 tolerated(0.46) benign(0.07) TCGA-L5-A8NH-01 4 47939078 47939078 C T CNGA1 Missense_Mutation p.R547H 0.28 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NH-01 4 81123235 81123235 G A PRDM8 Missense_Mutation p.G207S 0.34 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-L5-A8NH-01 5 13845021 13845021 C T DNAH5 Silent p.A1732A 0.36 TCGA-L5-A8NH-01 5 140242248 140242248 G A AC005609.1 3'UTR 0.08 TCGA-L5-A8NH-01 5 140255418 140255418 G A PCDHA12 Missense_Mutation p.V121M 0.09 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-L5-A8NH-01 5 145508678 145508678 C G LARS Missense_Mutation p.D878H 0.07 tolerated(0.05) benign(0.004) TCGA-L5-A8NH-01 5 1882780 1882780 C T IRX4 5'UTR 0.39 TCGA-L5-A8NH-01 5 43490755 43490755 A G C5orf34 Missense_Mutation p.S553P 0.17 tolerated(0.24) benign(0.031) TCGA-L5-A8NH-01 5 76028151 76028151 C T F2R Missense_Mutation p.T34I 0.45 tolerated(0.11) benign(0.006) TCGA-L5-A8NH-01 6 100006343 100006343 C T CCNC Intron 0.46 TCGA-L5-A8NH-01 6 131229998 131229998 C G EPB41L2 Missense_Mutation p.W272C 0.07 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NH-01 6 134758988 134758988 A G LINC01010 RNA 0.26 TCGA-L5-A8NH-01 6 153042973 153042973 G A MYCT1 Missense_Mutation p.R98K 0.15 tolerated(1) probably_damaging(0.994) TCGA-L5-A8NH-01 6 160668305 160668306 - C SLC22A2 Frame_Shift_Ins p.L290Afs*6 0.10 TCGA-L5-A8NH-01 6 161007564 161007564 G A LPA Missense_Mutation p.T1349M 0.36 tolerated(0.1) probably_damaging(0.999) TCGA-L5-A8NH-01 6 24570135 24570135 C T KIAA0319 Missense_Mutation p.V663I 0.37 tolerated(0.98) benign(0.015) TCGA-L5-A8NH-01 6 30680055 30680055 G A MDC1 Missense_Mutation p.A555V 0.22 tolerated(0.2) benign(0.014) TCGA-L5-A8NH-01 6 33048576 33048576 G A HLA-DPB1 Silent p.A76A 0.21 TCGA-L5-A8NH-01 6 33144959 33144959 T G COL11A2 Missense_Mutation p.K586T 0.15 possibly_damaging(0.607) TCGA-L5-A8NH-01 6 39693059 39693059 C T KIF6 Missense_Mutation p.A10T 0.16 deleterious(0.03) possibly_damaging(0.846) TCGA-L5-A8NH-01 6 70042868 70042868 A G BAI3 Silent p.G1052G 0.12 TCGA-L5-A8NH-01 6 84366506 84366506 C A SNAP91 Missense_Mutation p.A209S 0.20 deleterious(0) unknown(0) TCGA-L5-A8NH-01 6 96657956 96657956 A G FUT9 3'UTR 0.21 TCGA-L5-A8NH-01 7 100377345 100377345 C T ZAN Missense_Mutation p.P2198S 0.18 unknown(0) TCGA-L5-A8NH-01 7 135376332 135376332 G C SLC13A4 Missense_Mutation p.P428A 0.06 deleterious(0) probably_damaging(0.973) TCGA-L5-A8NH-01 7 137075144 137075144 A G DGKI 3'Flank 0.27 TCGA-L5-A8NH-01 7 27185252 27185252 G A HOXA6 3'UTR 0.09 TCGA-L5-A8NH-01 7 29552490 29552490 G A CHN2 3'UTR 0.23 TCGA-L5-A8NH-01 7 48315875 48315875 T G ABCA13 Silent p.L2204L 0.33 TCGA-L5-A8NH-01 7 5530873 5530873 C T FBXL18 Silent p.S663S 0.33 TCGA-L5-A8NH-01 8 104178455 104178455 T G BAALC Intron 0.37 TCGA-L5-A8NH-01 8 117658786 117658786 C T EIF3H Silent p.P295P 0.35 TCGA-L5-A8NH-01 8 134233036 134233036 G A WISP1 Missense_Mutation p.D188N 0.75 tolerated(0.21) benign(0.015) TCGA-L5-A8NH-01 8 144808794 144808794 G A FAM83H Missense_Mutation p.P946L 0.11 tolerated(0.17) benign(0.003) TCGA-L5-A8NH-01 8 145661646 145661646 C T TONSL Missense_Mutation p.A724T 0.11 tolerated(0.27) benign(0.169) TCGA-L5-A8NH-01 8 24199233 24199233 G T ADAM28 Missense_Mutation p.G598V 0.25 deleterious(0) possibly_damaging(0.719) TCGA-L5-A8NH-01 8 35631964 35631964 C A UNC5D Missense_Mutation p.Q876K 0.55 deleterious(0.02) possibly_damaging(0.884) TCGA-L5-A8NH-01 8 68968135 68968135 G A PREX2 Missense_Mutation p.M388I 0.20 tolerated(0.06) benign(0.011) TCGA-L5-A8NH-01 8 69017554 69017554 T A PREX2 Intron 0.17 TCGA-L5-A8NH-01 8 71053566 71053566 C G NCOA2 Missense_Mutation p.V961L 0.47 tolerated(0.22) benign(0.165) TCGA-L5-A8NH-01 8 97157145 97157145 G A GDF6 Silent p.F338F 0.25 TCGA-L5-A8NH-01 9 23691890 23691890 T C ELAVL2 3'UTR 0.45 TCGA-L5-A8NH-01 9 33442476 33442476 A G AQP3 Missense_Mutation p.I178T 0.17 deleterious(0) probably_damaging(0.986) TCGA-L5-A8NH-01 9 39888176 39888176 A C SPATA31A2 Missense_Mutation p.N388T 0.28 tolerated(0.08) possibly_damaging(0.765) TCGA-L5-A8NH-01 9 84607460 84607460 G A SPATA31D1 Missense_Mutation p.R692Q 0.10 tolerated(0.28) benign(0.114) TCGA-L5-A8NH-01 9 95872944 95872944 G A C9orf89 Missense_Mutation p.R82Q 0.05 deleterious(0) probably_damaging(0.988) TCGA-L5-A8NH-01 X 102318197 102318197 C A BEX1 Missense_Mutation p.E2D 0.09 tolerated(0.28) benign(0.248) TCGA-L5-A8NH-01 X 147011714 147011714 C G FMR1 Missense_Mutation p.T194S 0.13 tolerated(0.12) benign(0.235) TCGA-L5-A8NH-01 X 29938112 29938112 A C IL1RAPL1 Missense_Mutation p.I320L 0.62 tolerated(0.68) benign(0.062) TCGA-L5-A8NH-01 X 46433672 46433672 G A CHST7 Silent p.Q102Q 0.12 TCGA-L5-A8NH-01 X 77913195 77913195 A C ZCCHC5 Silent p.T241T 0.80 TCGA-L5-A8NH-01 X 92926755 92926755 A G NAP1L3 3'UTR 0.75 TCGA-L5-A8NH-01 X 9687594 9687594 G C TBL1X 3'UTR 0.15 TCGA-L5-A8NI-01 10 112057441 112057441 G C SMNDC1 Silent p.T103T 0.39 TCGA-L5-A8NI-01 10 24834700 24834700 G T KIAA1217 Intron 0.17 TCGA-L5-A8NI-01 10 33190305 33190305 C A ITGB1 3'UTR 0.23 TCGA-L5-A8NI-01 10 50028335 50028335 C T WDFY4 Silent p.G1854G 0.26 TCGA-L5-A8NI-01 10 63440912 63440912 T C C10orf107 5'UTR 0.35 TCGA-L5-A8NI-01 10 7618751 7618751 C T ITIH5 Missense_Mutation p.R548Q 0.17 tolerated(0.35) benign(0.004) TCGA-L5-A8NI-01 11 111593398 111593398 C G SIK2 Missense_Mutation p.L689V 0.43 tolerated(0.29) benign(0.021) TCGA-L5-A8NI-01 11 119169200 119169200 A T CBL Missense_Mutation p.N795I 0.28 tolerated_low_confidence(0.07) benign(0.071) TCGA-L5-A8NI-01 11 124135444 124135444 A C OR8G5 Missense_Mutation p.N241T 0.28 deleterious(0.01) possibly_damaging(0.772) TCGA-L5-A8NI-01 11 1247507 1247507 G A MUC5B Splice_Site p.X67_splice 0.29 TCGA-L5-A8NI-01 11 17485090 17485100 CAAGAACTTGA - ABCC8 Frame_Shift_Del p.V155Gfs*113 0.27 TCGA-L5-A8NI-01 11 18735564 18735564 C A IGSF22 Missense_Mutation p.D644Y 0.22 deleterious(0) probably_damaging(0.985) TCGA-L5-A8NI-01 11 28057867 28057867 C T KIF18A Missense_Mutation p.D765N 0.43 tolerated(0.27) benign(0.001) TCGA-L5-A8NI-01 11 2892044 2892044 C G KCNQ1DN RNA 0.30 TCGA-L5-A8NI-01 11 32410206 32410206 C T WT1 3'UTR 0.34 TCGA-L5-A8NI-01 11 32998536 32998536 A G QSER1 3'UTR 0.26 TCGA-L5-A8NI-01 11 35489582 35489582 A C PAMR1 Missense_Mutation p.L263V 0.21 tolerated(0.11) probably_damaging(0.999) TCGA-L5-A8NI-01 11 5068584 5068584 G A OR52J3 Missense_Mutation p.V277I 0.35 tolerated(0.15) benign(0.098) TCGA-L5-A8NI-01 11 5537601 5537601 T A UBQLNL Missense_Mutation p.K24I 0.28 tolerated(0.05) benign(0.122) TCGA-L5-A8NI-01 11 59349001 59349001 T G OSBP Missense_Mutation p.T569P 0.30 deleterious(0.01) possibly_damaging(0.588) TCGA-L5-A8NI-01 11 59523091 59523091 C T STX3 Silent p.L5L 0.29 TCGA-L5-A8NI-01 11 60688429 60688429 C T TMEM109 Silent p.A103A 0.40 TCGA-L5-A8NI-01 11 62562433 62562433 G A NXF1 Silent p.F517F 0.29 TCGA-L5-A8NI-01 11 63273821 63273821 G A LGALS12 5'Flank 0.25 TCGA-L5-A8NI-01 11 64876183 64876183 C G VPS51 Missense_Mutation p.L414V 0.23 deleterious(0) probably_damaging(0.91) TCGA-L5-A8NI-01 11 66082572 66082572 G A CD248 Missense_Mutation p.P643S 0.33 tolerated(0.15) benign(0.029) TCGA-L5-A8NI-01 11 6632975 6632975 C - TAF10 Frame_Shift_Del p.A103Pfs*5 0.30 TCGA-L5-A8NI-01 11 72946919 72946919 C G P2RY2 3'UTR 0.21 TCGA-L5-A8NI-01 11 7718085 7718085 A C OVCH2 Missense_Mutation p.S356R 0.29 tolerated(0.54) benign(0.008) TCGA-L5-A8NI-01 11 85593712 85593712 T C CCDC83 Silent p.L113L 0.17 TCGA-L5-A8NI-01 11 94731549 94731549 G A KDM4D Missense_Mutation p.R338H 0.41 tolerated(0.16) benign(0.004) TCGA-L5-A8NI-01 12 101777368 101777368 G C UTP20 Silent p.G2659G 0.61 TCGA-L5-A8NI-01 12 113821938 113821938 A C PLBD2 Missense_Mutation p.K329T 0.48 tolerated(0.43) benign(0.097) TCGA-L5-A8NI-01 12 123498552 123498552 C T PITPNM2 Missense_Mutation p.G39D 0.50 deleterious(0) probably_damaging(1) TCGA-L5-A8NI-01 12 126932561 126932561 C A RP5-944M2.3 RNA 0.27 TCGA-L5-A8NI-01 12 126932562 126932562 A G RP5-944M2.3 RNA 0.26 TCGA-L5-A8NI-01 12 18872517 18872517 A T PLCZ1 Missense_Mutation p.D139E 0.35 tolerated(0.3) benign(0.012) TCGA-L5-A8NI-01 12 21472312 21472312 C T SLCO1A2 Intron 0.30 TCGA-L5-A8NI-01 12 40753152 40753152 A T LRRK2 Nonsense_Mutation p.R2312* 0.20 TCGA-L5-A8NI-01 12 50488347 50488347 G C SMARCD1 Missense_Mutation p.D421H 0.38 deleterious(0) probably_damaging(0.988) TCGA-L5-A8NI-01 12 51142167 51142167 G A DIP2B 3'UTR 0.32 TCGA-L5-A8NI-01 12 53443889 53443889 C A TENC1 Intron 0.32 TCGA-L5-A8NI-01 12 6560765 6560765 C T CD27 3'UTR 0.80 TCGA-L5-A8NI-01 12 75719046 75719046 C T CAPS2 Nonsense_Mutation p.W54* 0.18 TCGA-L5-A8NI-01 13 111164544 111164544 C T COL4A2 3'UTR 0.30 TCGA-L5-A8NI-01 13 115090509 115090509 C T CHAMP1 Nonsense_Mutation p.R398* 0.46 TCGA-L5-A8NI-01 13 19751406 19751406 C T TUBA3C Silent p.T239T 0.29 TCGA-L5-A8NI-01 13 24190184 24190184 G C TNFRSF19 Missense_Mutation p.G120A 0.61 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NI-01 13 43469163 43469163 C T EPSTI1 Missense_Mutation p.M310I 0.56 deleterious(0.02) possibly_damaging(0.763) TCGA-L5-A8NI-01 13 76423377 76423377 G A LMO7 Missense_Mutation p.R1205H 0.64 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A8NI-01 13 94680021 94680021 G T GPC6 Missense_Mutation p.K250N 0.25 deleterious(0) possibly_damaging(0.791) TCGA-L5-A8NI-01 13 94680086 94680086 A G GPC6 Missense_Mutation p.N272S 0.26 deleterious(0.01) possibly_damaging(0.461) TCGA-L5-A8NI-01 13 94680141 94680141 G A GPC6 Silent p.L290L 0.27 TCGA-L5-A8NI-01 13 98116495 98116495 A T RAP2A Missense_Mutation p.K117N 0.25 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NI-01 14 102378766 102378766 G A PPP2R5C Missense_Mutation p.E459K 0.42 tolerated(0.05) benign(0.02) TCGA-L5-A8NI-01 14 21109285 21109285 C T OR6S1 Missense_Mutation p.R189H 0.19 tolerated(0.49) benign(0.015) TCGA-L5-A8NI-01 14 21853819 21853819 G C CHD8 Missense_Mutation p.P2567A 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.539) TCGA-L5-A8NI-01 14 24808218 24808218 G C RIPK3 Intron 0.15 TCGA-L5-A8NI-01 14 29237869 29237869 A G FOXG1 Missense_Mutation p.S462G 0.34 deleterious_low_confidence(0) benign(0.01) TCGA-L5-A8NI-01 14 35074923 35074923 T C SNX6 Missense_Mutation p.I103V 0.29 tolerated(0.09) probably_damaging(0.977) TCGA-L5-A8NI-01 14 55434081 55434081 G A WDHD1 Missense_Mutation p.P699S 0.36 tolerated(0.13) benign(0.14) TCGA-L5-A8NI-01 14 69818841 69818841 G C GALNT16 Missense_Mutation p.A545P 0.44 tolerated(0.34) benign(0.002) TCGA-L5-A8NI-01 14 70477509 70477509 C T SMOC1 Silent p.L235L 0.54 TCGA-L5-A8NI-01 14 76173979 76173979 C T TTLL5 Silent p.D223D 0.56 TCGA-L5-A8NI-01 15 20588510 20588510 T C HERC2P3 RNA 0.20 TCGA-L5-A8NI-01 15 29428638 29428638 G A FAM189A1 Silent p.P286P 0.29 TCGA-L5-A8NI-01 15 34672863 34672863 A C GOLGA8A 3'UTR 0.28 TCGA-L5-A8NI-01 15 35212634 35212634 A C AQR Missense_Mutation p.S374A 0.22 tolerated(0.9) benign(0.002) TCGA-L5-A8NI-01 15 40558404 40558404 C T PAK6 Missense_Mutation p.S189L 0.29 tolerated(0.36) benign(0.002) TCGA-L5-A8NI-01 15 45713469 45713469 G A SPATA5L1 3'UTR 0.47 TCGA-L5-A8NI-01 15 72691089 72691089 C G TMEM202 Silent p.L59L 0.67 TCGA-L5-A8NI-01 15 74882286 74882286 A G ARID3B Missense_Mutation p.T275A 0.45 deleterious(0) probably_damaging(0.924) TCGA-L5-A8NI-01 15 75968270 75968270 T C CSPG4 Missense_Mutation p.E2197G 0.17 tolerated(0.34) benign(0.001) TCGA-L5-A8NI-01 15 76071775 76071775 C T RP11-24M17.5 RNA 0.19 TCGA-L5-A8NI-01 15 77407488 77407508 GTCATCCTCATCCTTTTCAGG - PEAK1 In_Frame_Del p.P1411_D1417del 0.21 TCGA-L5-A8NI-01 15 85259316 85259316 G C SEC11A 5'UTR 0.22 TCGA-L5-A8NI-01 15 89744206 89744206 G A ABHD2 3'UTR 0.50 TCGA-L5-A8NI-01 16 2029801 2029801 T C NOXO1 Silent p.L235L 0.33 TCGA-L5-A8NI-01 16 2164867 2164867 G A PKD1 Silent p.H719H 0.26 TCGA-L5-A8NI-01 16 2345651 2345651 G A ABCA3 Missense_Mutation p.T785M 0.35 deleterious(0.04) benign(0.063) TCGA-L5-A8NI-01 16 284826 284826 G T ITFG3 5'UTR 0.30 TCGA-L5-A8NI-01 16 29755699 29755699 G C C16orf54 Missense_Mutation p.P192A 0.41 tolerated_low_confidence(0.09) benign(0) TCGA-L5-A8NI-01 16 31766026 31766026 G C ZNF720 Intron 0.25 TCGA-L5-A8NI-01 16 47007611 47007611 A C DNAJA2 5'UTR 0.37 TCGA-L5-A8NI-01 16 57690476 57690476 G C GPR56 Missense_Mutation p.E372Q 0.25 tolerated(0.06) possibly_damaging(0.906) TCGA-L5-A8NI-01 16 58035454 58035454 C T USB1 Missense_Mutation p.R23W 0.08 deleterious(0) possibly_damaging(0.513) TCGA-L5-A8NI-01 16 58577327 58577327 A C CNOT1 Intron 0.23 TCGA-L5-A8NI-01 16 68112390 68112390 G T DUS2 Missense_Mutation p.V405F 0.34 tolerated(0.18) possibly_damaging(0.457) TCGA-L5-A8NI-01 16 68113098 68113098 A C DUS2 3'UTR 0.30 TCGA-L5-A8NI-01 16 81076086 81076086 G A ATMIN Splice_Site p.X221_splice 0.22 TCGA-L5-A8NI-01 16 81412454 81412454 G C GAN 3'UTR 0.20 TCGA-L5-A8NI-01 16 85008357 85008357 C T ZDHHC7 3'Flank 0.35 TCGA-L5-A8NI-01 17 10441064 10441064 T C MYH2 Missense_Mutation p.E502G 0.54 deleterious(0) possibly_damaging(0.882) TCGA-L5-A8NI-01 17 27209680 27209680 C A FLOT2 Missense_Mutation p.D126Y 0.43 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NI-01 17 31102916 31102930 ATAGGGTCACCCTTG TATCAATATC MYO1D Frame_Shift_Del p.F172Lfs*10 0.36 TCGA-L5-A8NI-01 17 37317573 37317573 C T ARL5C Missense_Mutation p.R96Q 0.57 deleterious(0.03) benign(0.021) TCGA-L5-A8NI-01 17 41203114 41203114 G T BRCA1 Silent p.I1787I 0.72 TCGA-L5-A8NI-01 17 43319299 43319299 C G FMNL1 Silent p.A557A 0.25 TCGA-L5-A8NI-01 17 46621976 46621976 C A HOXB2 Nonsense_Mutation p.E100* 0.26 TCGA-L5-A8NI-01 17 48646258 48646258 C T CACNA1G Silent p.V90V 0.19 TCGA-L5-A8NI-01 17 48649318 48649318 C A CACNA1G Missense_Mutation p.F222L 0.18 deleterious(0.01) possibly_damaging(0.842) TCGA-L5-A8NI-01 17 55182920 55182920 A G AKAP1 Missense_Mutation p.H32R 0.61 tolerated(0.46) benign(0.001) TCGA-L5-A8NI-01 17 6374666 6374666 A C PITPNM3 Missense_Mutation p.L480R 0.26 deleterious(0) possibly_damaging(0.905) TCGA-L5-A8NI-01 17 68129626 68129626 A - KCNJ16 3'UTR 0.41 TCGA-L5-A8NI-01 17 72764629 72764629 C G SLC9A3R1 Missense_Mutation p.P304R 0.64 tolerated(0.31) benign(0) TCGA-L5-A8NI-01 17 7578412 7578412 A C TP53 Missense_Mutation p.V173G 0.75 deleterious(0) probably_damaging(1) TCGA-L5-A8NI-01 17 76160528 76160528 G T C17orf99 Intron 0.59 TCGA-L5-A8NI-01 18 14851980 14851980 A G ANKRD30B Missense_Mutation p.E1227G 0.27 deleterious(0.05) possibly_damaging(0.792) TCGA-L5-A8NI-01 18 19154012 19154040 ACTTCTTCATCTCATTCTTTTTCGGGACC - ESCO1 Frame_Shift_Del p.V256Gfs*8 0.30 TCGA-L5-A8NI-01 18 6870651 6870651 T C ARHGAP28 Missense_Mutation p.Y133H 0.30 deleterious(0) probably_damaging(0.982) TCGA-L5-A8NI-01 19 15651362 15651381 CGGCGGATGGGCGGAGGTTC - CYP4F22 Frame_Shift_Del p.D260Gfs*3 0.35 TCGA-L5-A8NI-01 19 15940098 15940098 A C UCA1 RNA 0.52 TCGA-L5-A8NI-01 19 16472781 16472781 C T EPS15L1 Missense_Mutation p.V799I 0.26 tolerated(0.7) benign(0.322) TCGA-L5-A8NI-01 19 18119312 18119312 G A ARRDC2 Missense_Mutation p.A65T 0.47 tolerated(0.17) benign(0.02) TCGA-L5-A8NI-01 19 19369550 19369550 G A HAPLN4 Missense_Mutation p.A200V 0.30 tolerated(0.25) possibly_damaging(0.543) TCGA-L5-A8NI-01 19 21558723 21558723 T A ZNF738 Missense_Mutation p.D92E 0.28 tolerated(1) benign(0.002) TCGA-L5-A8NI-01 19 33696342 33696342 G A LRP3 Silent p.A222A 0.35 TCGA-L5-A8NI-01 19 43576000 43576000 A T PSG2 Silent p.S272S 0.40 TCGA-L5-A8NI-01 19 44933045 44933045 G A ZNF229 Silent p.F637F 0.65 TCGA-L5-A8NI-01 19 49900929 49900929 C A CCDC155 Missense_Mutation p.P141Q 0.31 deleterious(0.01) possibly_damaging(0.889) TCGA-L5-A8NI-01 19 49983864 49983864 A G FLT3LG 3'UTR 0.30 TCGA-L5-A8NI-01 19 54695405 54695405 G C TSEN34 Missense_Mutation p.G64R 0.52 deleterious(0) benign(0.137) TCGA-L5-A8NI-01 19 57643084 57643084 A C USP29 3'UTR 0.19 TCGA-L5-A8NI-01 19 58880489 58880489 C G ZNF837 Missense_Mutation p.G71R 0.35 tolerated(0.62) benign(0) TCGA-L5-A8NI-01 19 6913789 6913789 T - EMR1 Frame_Shift_Del p.W418Gfs*16 0.27 TCGA-L5-A8NI-01 1 118583397 118583397 G A SPAG17 Missense_Mutation p.S1041F 0.27 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NI-01 1 119965254 119965254 A T HSD3B2 3'UTR 0.32 TCGA-L5-A8NI-01 1 12806383 12806383 T G C1orf158 Missense_Mutation p.F2C 0.22 deleterious(0) possibly_damaging(0.847) TCGA-L5-A8NI-01 1 142713947 142713947 A C RP11-417J8.6 RNA 0.27 TCGA-L5-A8NI-01 1 152192643 152192643 A C HRNR Missense_Mutation p.S488A 0.24 unknown(0) TCGA-L5-A8NI-01 1 160398257 160398257 T G VANGL2 3'UTR 0.27 TCGA-L5-A8NI-01 1 176992633 176992633 A C ASTN1 Missense_Mutation p.F449V 0.17 deleterious(0) benign(0.165) TCGA-L5-A8NI-01 1 186277487 186277487 A G PRG4 Missense_Mutation p.E879G 0.38 unknown(0) TCGA-L5-A8NI-01 1 196887491 196887491 A C CFHR4 Missense_Mutation p.Q563H 0.31 tolerated(0.13) possibly_damaging(0.728) TCGA-L5-A8NI-01 1 202574728 202574728 A G SYT2 Missense_Mutation p.I58T 0.30 tolerated(0.11) benign(0.005) TCGA-L5-A8NI-01 1 210415432 210415432 G A SERTAD4 Missense_Mutation p.G274D 0.22 tolerated(0.13) benign(0.004) TCGA-L5-A8NI-01 1 211093344 211093344 T C KCNH1 Missense_Mutation p.K367R 0.53 tolerated(0.09) possibly_damaging(0.604) TCGA-L5-A8NI-01 1 215259759 215259759 A C KCNK2 Missense_Mutation p.K32T 0.22 tolerated_low_confidence(0.16) probably_damaging(0.997) TCGA-L5-A8NI-01 1 221057991 221057991 C G HLX Missense_Mutation p.A471G 0.27 tolerated_low_confidence(0.58) benign(0) TCGA-L5-A8NI-01 1 237996094 237996094 G A RYR2 3'UTR 0.53 TCGA-L5-A8NI-01 1 240070895 240070895 T A CHRM3 Missense_Mutation p.N48K 0.36 tolerated(0.07) benign(0.017) TCGA-L5-A8NI-01 1 2444348 2444348 C G PANK4 Missense_Mutation p.W569S 0.17 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NI-01 1 247200821 247200821 C G ZNF670 Missense_Mutation p.C367S 0.28 deleterious(0) possibly_damaging(0.847) TCGA-L5-A8NI-01 1 248004771 248004771 C A OR11L1 Missense_Mutation p.R143M 0.24 tolerated(0.16) benign(0.022) TCGA-L5-A8NI-01 1 27226852 27226856 GGGCC AG GPATCH3 In_Frame_Del p.A27_H28delinsY 0.13 TCGA-L5-A8NI-01 1 33560275 33560275 C G ADC Silent p.G238G 0.30 TCGA-L5-A8NI-01 1 33959192 33959192 T G ZSCAN20 Missense_Mutation p.L617W 0.24 tolerated(0.19) possibly_damaging(0.573) TCGA-L5-A8NI-01 1 46598535 46598535 A G PIK3R3 5'Flank 0.30 TCGA-L5-A8NI-01 1 4832493 4832493 T C AJAP1 Silent p.S357S 0.26 TCGA-L5-A8NI-01 1 6196804 6196804 T C CHD5 Missense_Mutation p.K853R 0.20 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NI-01 1 87046086 87046086 A T CLCA4 3'UTR 0.22 TCGA-L5-A8NI-01 1 9034923 9034923 G C CA6 3'Flank 0.22 TCGA-L5-A8NI-01 1 93617804 93617804 G C TMED5 3'UTR 0.24 TCGA-L5-A8NI-01 20 24646985 24646985 G A SYNDIG1 3'UTR 0.28 TCGA-L5-A8NI-01 20 31394058 31394058 A T DNMT3B Missense_Mutation p.K782I 0.36 deleterious(0) benign(0.229) TCGA-L5-A8NI-01 20 31671381 31671381 C T BPIFB4 Silent p.A126A 0.32 TCGA-L5-A8NI-01 20 32254623 32254623 G A ACTL10 5'UTR 0.58 TCGA-L5-A8NI-01 20 39808866 39808866 C T ZHX3 3'UTR 0.27 TCGA-L5-A8NI-01 20 9561175 9561175 A C PAK7 Missense_Mutation p.L203V 0.36 tolerated_low_confidence(0.3) benign(0.001) TCGA-L5-A8NI-01 21 31538814 31538814 A C CLDN17 Missense_Mutation p.I41S 0.32 deleterious(0) probably_damaging(0.949) TCGA-L5-A8NI-01 21 37736508 37736510 CTT - MORC3 In_Frame_Del p.L525del 0.31 TCGA-L5-A8NI-01 21 39671472 39671472 C T KCNJ15 Missense_Mutation p.P97S 0.30 tolerated(0.71) benign(0.024) TCGA-L5-A8NI-01 21 43809063 43809063 T C TMPRSS3 Silent p.K99K 0.11 TCGA-L5-A8NI-01 21 46596298 46596312 TTCCCACCCCCGAGT C ADARB1 Frame_Shift_Del p.F228Rfs*18 0.44 TCGA-L5-A8NI-01 21 47421259 47421259 G A COL6A1 Missense_Mutation p.V639I 0.33 tolerated(1) benign(0.035) TCGA-L5-A8NI-01 21 47608483 47608483 C A LSS 3'UTR 0.23 TCGA-L5-A8NI-01 22 35463110 35463110 C G ISX Missense_Mutation p.C10W 0.63 tolerated_low_confidence(0.18) benign(0.122) TCGA-L5-A8NI-01 22 41223099 41223099 C G ST13 Splice_Site p.X327_splice 0.61 TCGA-L5-A8NI-01 22 41865178 41865178 C G ACO2 Missense_Mutation p.R10G 0.53 deleterious_low_confidence(0.01) benign(0.018) TCGA-L5-A8NI-01 22 50705432 50705432 C T MAPK11 Missense_Mutation p.G181S 0.41 deleterious(0.04) benign(0.168) TCGA-L5-A8NI-01 2 100722013 100722013 G A AFF3 5'UTR 0.35 TCGA-L5-A8NI-01 2 132919409 132919409 A G ANKRD30BL 5'UTR 0.56 TCGA-L5-A8NI-01 2 137872721 137872721 A G THSD7B Silent p.K409K 0.57 TCGA-L5-A8NI-01 2 179458716 179458716 C T TTN Silent p.R19468R 0.36 TCGA-L5-A8NI-01 2 179545834 179545834 T G TTN Missense_Mutation p.K11104N 0.25 TCGA-L5-A8NI-01 2 182350629 182350629 G A ITGA4 Missense_Mutation p.E355K 0.24 tolerated(0.15) benign(0.009) TCGA-L5-A8NI-01 2 183051250 183051250 T C PDE1A Missense_Mutation p.I441V 0.31 tolerated(0.27) benign(0.001) TCGA-L5-A8NI-01 2 188210139 188210139 T G CALCRL 3'UTR 0.37 TCGA-L5-A8NI-01 2 197705769 197705769 C T PGAP1 3'UTR 0.18 TCGA-L5-A8NI-01 2 208489022 208489022 A G METTL21A Silent p.F26F 0.34 TCGA-L5-A8NI-01 2 211521321 211521321 C T CPS1 Missense_Mutation p.P1217S 0.05 deleterious(0) possibly_damaging(0.69) TCGA-L5-A8NI-01 2 21229517 21229517 C A APOB Missense_Mutation p.G3408V 0.47 probably_damaging(0.998) TCGA-L5-A8NI-01 2 224462806 224462806 A C SCG2 Missense_Mutation p.L399V 0.19 tolerated(0.36) benign(0.006) TCGA-L5-A8NI-01 2 227661413 227661413 C T IRS1 Missense_Mutation p.S681N 0.27 tolerated(0.48) benign(0.051) TCGA-L5-A8NI-01 2 232672680 232672680 C A COPS7B 3'UTR 0.28 TCGA-L5-A8NI-01 2 239757202 239757202 T G TWIST2 Missense_Mutation p.F116V 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NI-01 2 32843741 32843741 T C BIRC6 3'UTR 0.22 TCGA-L5-A8NI-01 2 38796367 38796367 C T HNRNPLL Missense_Mutation p.G437S 0.41 tolerated(0.21) probably_damaging(0.921) TCGA-L5-A8NI-01 2 74598729 74598729 G C DCTN1 Missense_Mutation p.P194A 0.24 tolerated(0.07) possibly_damaging(0.463) TCGA-L5-A8NI-01 2 74649396 74649396 G A WDR54 Missense_Mutation p.G39E 0.35 deleterious(0.05) possibly_damaging(0.722) TCGA-L5-A8NI-01 2 90211965 90211965 C A IGKV3D-11 Silent p.T19T 0.33 TCGA-L5-A8NI-01 2 97531628 97531628 A G SEMA4C Silent p.C99C 0.34 TCGA-L5-A8NI-01 3 10284963 10284963 C T IRAK2 3'UTR 0.12 TCGA-L5-A8NI-01 3 10370464 10370464 A C ATP2B2 3'UTR 0.29 TCGA-L5-A8NI-01 3 113667760 113667760 C G ZDHHC23 Missense_Mutation p.H37Q 0.04 deleterious(0) probably_damaging(1) TCGA-L5-A8NI-01 3 11888182 11888182 A G TAMM41 5'UTR 0.28 TCGA-L5-A8NI-01 3 121413865 121413865 G C GOLGB1 Missense_Mutation p.S1835R 0.23 benign(0.029) TCGA-L5-A8NI-01 3 123699410 123699410 G C ROPN1 5'UTR 0.50 TCGA-L5-A8NI-01 3 127788799 127788799 C G SEC61A1 3'UTR 0.09 TCGA-L5-A8NI-01 3 129111880 129111880 A T SNORA7B 3'Flank 0.42 TCGA-L5-A8NI-01 3 13611943 13611943 C T FBLN2 Missense_Mutation p.R30W 0.27 tolerated(0.21) possibly_damaging(0.736) TCGA-L5-A8NI-01 3 149459348 149459348 T G COMMD2 Missense_Mutation p.K187T 0.22 deleterious(0) possibly_damaging(0.9) TCGA-L5-A8NI-01 3 155200283 155200283 A C PLCH1 Missense_Mutation p.L1186V 0.35 deleterious_low_confidence(0.03) benign(0.297) TCGA-L5-A8NI-01 3 173996750 173996750 T G NLGN1 Missense_Mutation p.V320G 0.33 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NI-01 3 44408948 44408948 G C TCAIM Missense_Mutation p.G107A 0.29 tolerated(0.07) possibly_damaging(0.815) TCGA-L5-A8NI-01 3 48965152 48965152 T A ARIH2 Missense_Mutation p.F54Y 0.25 tolerated(1) benign(0.341) TCGA-L5-A8NI-01 3 52416392 52416392 G T DNAH1 Missense_Mutation p.W2621L 0.20 probably_damaging(0.998) TCGA-L5-A8NI-01 3 56661674 56661674 T G FAM208A Missense_Mutation p.L1322F 0.21 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NI-01 3 72423778 72423778 T A RYBP 3'UTR 0.41 TCGA-L5-A8NI-01 4 120192515 120192515 A G USP53 Silent p.K500K 0.19 TCGA-L5-A8NI-01 4 141600856 141600856 A T TBC1D9 Missense_Mutation p.Y168N 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NI-01 4 153244238 153244238 C - FBXW7 Frame_Shift_Del p.S640Tfs*7 0.30 TCGA-L5-A8NI-01 4 187628224 187628224 C T FAT1 Missense_Mutation p.V920I 0.27 benign(0.106) TCGA-L5-A8NI-01 4 27010561 27010561 C G STIM2 Missense_Mutation p.P484A 0.38 tolerated(0.16) possibly_damaging(0.643) TCGA-L5-A8NI-01 4 39329211 39329211 A G RFC1 Missense_Mutation p.L166P 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-L5-A8NI-01 4 47597665 47597665 A G CORIN 3'UTR 0.25 TCGA-L5-A8NI-01 4 66230799 66230799 T G EPHA5 Missense_Mutation p.E724D 0.24 deleterious(0) benign(0.076) TCGA-L5-A8NI-01 4 70798299 70798299 T C CSN1S1 Missense_Mutation p.L9P 0.21 deleterious(0) probably_damaging(0.955) TCGA-L5-A8NI-01 4 71650542 71650542 G C RUFY3 Silent p.G339G 0.32 TCGA-L5-A8NI-01 4 71650543 71650543 C T RUFY3 Nonsense_Mutation p.Q340* 0.32 TCGA-L5-A8NI-01 5 111500542 111500542 A G EPB41L4A 3'UTR 0.24 TCGA-L5-A8NI-01 5 140307982 140307982 C A PCDHAC1 Nonsense_Mutation p.S502* 0.23 TCGA-L5-A8NI-01 5 140480810 140480810 G A PCDHB3 Missense_Mutation p.E193K 0.28 deleterious_low_confidence(0.01) benign(0.171) TCGA-L5-A8NI-01 5 140535954 140535954 T C PCDHB17 Silent p.D126D 0.35 TCGA-L5-A8NI-01 5 140802465 140802465 C T PCDHGA11 Silent p.N557N 0.22 TCGA-L5-A8NI-01 5 141024481 141024481 G A FCHSD1 Missense_Mutation p.T490M 0.35 tolerated(0.1) benign(0.149) TCGA-L5-A8NI-01 5 141041523 141041531 GGGGCGGAG - ARAP3 Intron 0.32 TCGA-L5-A8NI-01 5 141242988 141242988 G C PCDH1 Missense_Mutation p.R970G 0.36 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NI-01 5 14709915 14709915 C T ANKH 3'UTR 0.35 TCGA-L5-A8NI-01 5 159834513 159834513 T C SLU7 Silent p.K365K 0.33 TCGA-L5-A8NI-01 5 161325500 161325500 T A GABRA1 3'UTR 0.23 TCGA-L5-A8NI-01 5 174869480 174869480 G A DRD1 Missense_Mutation p.A208V 0.33 tolerated(0.18) benign(0.074) TCGA-L5-A8NI-01 5 178987183 178987183 C G RUFY1 Silent p.L156L 0.22 TCGA-L5-A8NI-01 5 40681181 40681181 T G PTGER4 Missense_Mutation p.I29S 0.35 deleterious(0.03) benign(0.094) TCGA-L5-A8NI-01 5 40681182 40681182 C A PTGER4 Silent p.I29I 0.35 TCGA-L5-A8NI-01 5 40934522 40934522 A C C7 Silent p.G78G 0.26 TCGA-L5-A8NI-01 5 41052670 41052670 A G MROH2B Missense_Mutation p.L376P 0.26 tolerated(0.12) benign(0.308) TCGA-L5-A8NI-01 5 5303454 5303454 A G ADAMTS16 Missense_Mutation p.T955A 0.47 tolerated(0.17) benign(0.014) TCGA-L5-A8NI-01 5 80366374 80366374 G C RASGRF2 Missense_Mutation p.D203H 0.15 deleterious(0.01) possibly_damaging(0.894) TCGA-L5-A8NI-01 5 90106393 90106393 G A GPR98 Missense_Mutation p.D5106N 0.26 benign(0.067) TCGA-L5-A8NI-01 6 112015848 112015848 C T FYN Missense_Mutation p.V368M 0.28 deleterious(0.02) probably_damaging(1) TCGA-L5-A8NI-01 6 117841079 117841079 T - DCBLD1 Frame_Shift_Del p.L144Cfs*2 0.30 TCGA-L5-A8NI-01 6 123785967 123785967 T C TRDN Intron 0.24 TCGA-L5-A8NI-01 6 132722504 132722504 G T MOXD1 Nonsense_Mutation p.S21* 0.20 TCGA-L5-A8NI-01 6 132938956 132938985 GATGTTATGCTAAGCATCAGGTCAAAACTA - TAAR2 In_Frame_Del p.S121_S130del 0.35 TCGA-L5-A8NI-01 6 138192616 138192616 C G TNFAIP3 Missense_Mutation p.N84K 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NI-01 6 138794462 138794462 T C NHSL1 Missense_Mutation p.D155G 0.17 tolerated(0.06) possibly_damaging(0.671) TCGA-L5-A8NI-01 6 146720652 146720652 C T GRM1 Missense_Mutation p.A826V 0.37 deleterious(0.01) probably_damaging(0.968) TCGA-L5-A8NI-01 6 150569908 150569908 G A PPP1R14C Silent p.R150R 0.44 TCGA-L5-A8NI-01 6 157521973 157521973 C A ARID1B Missense_Mutation p.D1415E 0.43 benign(0.012) TCGA-L5-A8NI-01 6 16290814 16290814 C T GMPR Silent p.T273T 0.39 TCGA-L5-A8NI-01 6 168276141 168276141 G T MLLT4 Missense_Mutation p.Q235H 0.47 deleterious(0) probably_damaging(0.93) TCGA-L5-A8NI-01 6 27419056 27419056 C T ZNF184 3'UTR 0.08 TCGA-L5-A8NI-01 6 28214784 28214784 A G ZKSCAN4 Silent p.D247D 0.38 TCGA-L5-A8NI-01 6 33766970 33766970 T G MLN Missense_Mutation p.K49T 0.20 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NI-01 6 38705616 38705616 G C DNAH8 Missense_Mutation p.K111N 0.16 benign(0.001) TCGA-L5-A8NI-01 6 42980662 42980662 A T MEA1 Splice_Site p.X136_splice 0.10 TCGA-L5-A8NI-01 6 47775912 47775912 G C OPN5 Missense_Mutation p.G260A 0.22 deleterious(0.02) possibly_damaging(0.899) TCGA-L5-A8NI-01 6 47869424 47869424 T A PTCHD4 Intron 0.30 TCGA-L5-A8NI-01 6 56437023 56437023 T C DST Silent p.E1909E 0.29 TCGA-L5-A8NI-01 6 65300523 65300523 A G EYS Missense_Mutation p.F1746S 0.33 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-L5-A8NI-01 6 87967225 87967225 A G ZNF292 Missense_Mutation p.N1293S 0.48 tolerated(0.84) benign(0.001) TCGA-L5-A8NI-01 6 88852626 88852626 T C CNR1 3'UTR 0.24 TCGA-L5-A8NI-01 6 97679434 97679434 C G MMS22L Missense_Mutation p.C466S 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-L5-A8NI-01 7 100606247 100606247 C T MUC3A Missense_Mutation p.S588L 0.42 deleterious(0.01) benign(0.39) TCGA-L5-A8NI-01 7 128534279 128534279 G A KCP RNA 0.45 TCGA-L5-A8NI-01 7 129062728 129062728 A G AHCYL2 Silent p.Q503Q 0.35 TCGA-L5-A8NI-01 7 133948761 133948761 A T LRGUK 3'UTR 0.48 TCGA-L5-A8NI-01 7 143807174 143807174 T G OR2A2 Missense_Mutation p.F167V 0.47 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NI-01 7 149511585 149511585 G A SSPO RNA 0.64 TCGA-L5-A8NI-01 7 150714208 150714208 A C ATG9B Missense_Mutation p.V735G 0.37 deleterious(0) probably_damaging(0.918) TCGA-L5-A8NI-01 7 44611155 44611155 G C DDX56 Missense_Mutation p.L276V 0.17 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NI-01 7 45762452 45762452 C A ADCY1 3'UTR 0.34 TCGA-L5-A8NI-01 7 54617774 54617774 G A VSTM2A Missense_Mutation p.S182N 0.07 tolerated(0.24) benign(0.003) TCGA-L5-A8NI-01 7 6662398 6662398 G A ZNF853 Silent p.S592S 0.27 TCGA-L5-A8NI-01 7 73012035 73012035 G C MLXIPL Missense_Mutation p.N360K 0.71 tolerated(0.2) benign(0.103) TCGA-L5-A8NI-01 7 82467549 82467549 A C PCLO Missense_Mutation p.L4736R 0.53 unknown(0) TCGA-L5-A8NI-01 7 82581865 82581865 C T PCLO Missense_Mutation p.A2802T 0.23 unknown(0) TCGA-L5-A8NI-01 7 86509424 86509424 C G KIAA1324L 3'UTR 0.25 TCGA-L5-A8NI-01 8 10159088 10159088 G A MSRA Missense_Mutation p.E126K 0.25 tolerated(0.67) benign(0.017) TCGA-L5-A8NI-01 8 113421171 113421171 G T CSMD3 Missense_Mutation p.S1829Y 0.16 deleterious(0.02) probably_damaging(0.992) TCGA-L5-A8NI-01 8 114326842 114326842 G A CSMD3 Missense_Mutation p.S120L 0.31 tolerated(0.06) benign(0.071) TCGA-L5-A8NI-01 8 128428446 128428446 C T POU5F1B Missense_Mutation p.P112L 0.38 tolerated(0.17) benign(0.056) TCGA-L5-A8NI-01 8 12878968 12878968 T C KIAA1456 Silent p.T260T 0.30 TCGA-L5-A8NI-01 8 131859748 131859748 A C ADCY8 Missense_Mutation p.D808E 0.22 tolerated(0.39) benign(0.002) TCGA-L5-A8NI-01 8 133935598 133935598 A T TG Missense_Mutation p.Q1515L 0.27 deleterious(0) possibly_damaging(0.776) TCGA-L5-A8NI-01 8 145692681 145692681 G T KIFC2 Missense_Mutation p.Q142H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.789) TCGA-L5-A8NI-01 8 18258116 18258116 T C NAT2 Silent p.D201D 0.30 TCGA-L5-A8NI-01 8 26371894 26371894 C G PNMA2 5'Flank 0.45 TCGA-L5-A8NI-01 8 57076898 57076898 T A PLAG1 3'UTR 0.09 TCGA-L5-A8NI-01 8 70570792 70570792 C T SULF1 3'UTR 0.29 TCGA-L5-A8NI-01 8 89339413 89339413 G C MMP16 Missense_Mutation p.T8S 0.27 tolerated_low_confidence(0.68) benign(0) TCGA-L5-A8NI-01 8 91057130 91057130 C T DECR1 Silent p.G264G 0.18 TCGA-L5-A8NI-01 9 114500444 114500444 C G C9orf84 Intron 0.22 TCGA-L5-A8NI-01 9 116116558 116116558 G C BSPRY Missense_Mutation p.Q80H 0.32 deleterious(0.02) benign(0.019) TCGA-L5-A8NI-01 9 117786271 117786271 C A TNC Missense_Mutation p.G2159V 0.34 deleterious(0) probably_damaging(1) TCGA-L5-A8NI-01 9 126133620 126133620 C A CRB2 Missense_Mutation p.F733L 0.36 tolerated(0.15) benign(0.153) TCGA-L5-A8NI-01 9 128347859 128347859 T C MAPKAP1 Missense_Mutation p.S216G 0.19 deleterious(0.05) benign(0.21) TCGA-L5-A8NI-01 9 130106619 130106619 G T GARNL3 Splice_Site p.X452_splice 0.38 TCGA-L5-A8NI-01 9 131455942 131455942 C T SET Missense_Mutation p.T186M 0.40 tolerated(0.23) benign(0.148) TCGA-L5-A8NI-01 9 135975619 135975619 C T RALGDS Intron 0.47 TCGA-L5-A8NI-01 9 139350129 139350129 C T SEC16A Silent p.G1927G 0.37 TCGA-L5-A8NI-01 9 139354317 139354317 C T SEC16A Missense_Mutation p.D1695N 0.26 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NI-01 9 140000305 140000305 T C MAN1B1 Intron 0.16 TCGA-L5-A8NI-01 9 15175077 15175077 G A TTC39B Missense_Mutation p.A633V 0.60 deleterious(0) probably_damaging(0.955) TCGA-L5-A8NI-01 9 19409033 19409033 T C ACER2 5'Flank 0.86 TCGA-L5-A8NI-01 9 86468750 86468750 C T KIF27 Missense_Mutation p.E1051K 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-L5-A8NI-01 X 118925566 118925566 C G RPL39 5'UTR 0.56 TCGA-L5-A8NI-01 X 151303878 151303878 T C MAGEA10 Missense_Mutation p.E72G 0.57 deleterious(0.01) benign(0.066) TCGA-L5-A8NI-01 X 153660199 153660199 A G ATP6AP1 Silent p.A104A 0.58 TCGA-L5-A8NI-01 X 155009335 155009335 A C SPRY3 3'UTR 0.23 TCGA-L5-A8NI-01 X 155227423 155227423 T G IL9R 5'UTR 0.40 TCGA-L5-A8NI-01 X 1712780 1712780 C T AKAP17A Missense_Mutation p.P142L 0.72 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NI-01 X 19713154 19713154 G A SH3KBP1 Intron 0.52 TCGA-L5-A8NI-01 X 21624945 21624945 C T CNKSR2 Missense_Mutation p.P698L 0.38 tolerated(0.31) benign(0.013) TCGA-L5-A8NI-01 X 29973907 29973907 G A IL1RAPL1 Silent p.R687R 0.30 TCGA-L5-A8NI-01 X 36317100 36317100 T G CXorf30 Silent p.T11T 0.31 TCGA-L5-A8NI-01 X 46713468 46713468 T A RP2 Silent p.I220I 0.29 TCGA-L5-A8NI-01 X 47485920 47485920 T A CFP Splice_Site p.X314_splice 0.28 TCGA-L5-A8NI-01 X 73959052 73959052 T G KIAA2022 3'UTR 0.68 TCGA-L5-A8NI-01 X 79699737 79699737 A - FAM46D 3'UTR 0.34 TCGA-L5-A8NI-01 X 91134272 91134272 G A PCDH11X Silent p.P1011P 0.57 TCGA-L5-A8NI-01 X 92928462 92928462 G C NAP1L3 5'UTR 0.51 TCGA-L5-A8NI-01 Y 14951885 14951885 A C USP9Y Silent p.A1811A 0.08 TCGA-L5-A8NI-01 Y 15582100 15582100 A T UTY Missense_Mutation p.C76S 0.94 deleterious(0.02) possibly_damaging(0.468) TCGA-L5-A8NJ-01 10 104814209 104814209 G A CNNM2 Missense_Mutation p.R630H 0.22 deleterious(0.01) benign(0.197) TCGA-L5-A8NJ-01 10 118084487 118084487 A G CCDC172 5'UTR 0.24 TCGA-L5-A8NJ-01 10 11894050 11894050 C T PROSER2 5'UTR 0.26 TCGA-L5-A8NJ-01 10 13483468 13483468 G C BEND7 Intron 0.27 TCGA-L5-A8NJ-01 10 18827127 18827127 T C CACNB2 Silent p.L441L 0.22 TCGA-L5-A8NJ-01 10 18828266 18828266 T C CACNB2 Silent p.S532S 0.27 TCGA-L5-A8NJ-01 10 21803341 21803341 A G SKIDA1 3'UTR 0.17 TCGA-L5-A8NJ-01 10 27323846 27323846 A C ANKRD26 Missense_Mutation p.L1178R 0.24 deleterious(0) probably_damaging(0.974) TCGA-L5-A8NJ-01 10 37422955 37422955 T G ANKRD30A Missense_Mutation p.H187Q 0.24 tolerated(0.3) benign(0.051) TCGA-L5-A8NJ-01 10 3821248 3821249 - T KLF6 3'UTR 0.10 TCGA-L5-A8NJ-01 10 50029113 50029113 C T WDFY4 Missense_Mutation p.P1906S 0.21 deleterious(0.02) possibly_damaging(0.616) TCGA-L5-A8NJ-01 10 61112095 61112095 A G FAM13C Missense_Mutation p.F87L 0.17 tolerated_low_confidence(0.63) benign(0.389) TCGA-L5-A8NJ-01 10 61836146 61836146 A C ANK3 Missense_Mutation p.F1498C 0.57 probably_damaging(0.984) TCGA-L5-A8NJ-01 10 68859535 68859535 A G LRRTM3 3'UTR 0.20 TCGA-L5-A8NJ-01 10 75873970 75873970 G A VCL Missense_Mutation p.R993H 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A8NJ-01 10 81697571 81697571 T A SFTPD 3'UTR 0.22 TCGA-L5-A8NJ-01 10 91098633 91098633 T C IFIT3 Missense_Mutation p.L74S 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A8NJ-01 10 93389701 93389701 A G PPP1R3C Silent p.L313L 0.25 TCGA-L5-A8NJ-01 11 105880425 105880425 T C MSANTD4 Missense_Mutation p.D292G 0.65 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A8NJ-01 11 107920757 107920758 - A CUL5 Frame_Shift_Ins p.S128Ifs*14 0.18 TCGA-L5-A8NJ-01 11 109295721 109295721 T - C11orf87 3'UTR 0.48 TCGA-L5-A8NJ-01 11 110106906 110106906 A C RDX Missense_Mutation p.L421R 0.35 tolerated(0.11) probably_damaging(0.934) TCGA-L5-A8NJ-01 11 117387276 117387276 G A DSCAML1 Silent p.D623D 0.60 TCGA-L5-A8NJ-01 11 124757376 124757376 C T ROBO4 Silent p.L692L 0.30 TCGA-L5-A8NJ-01 11 132285650 132285650 A C OPCML 3'UTR 0.33 TCGA-L5-A8NJ-01 11 134062627 134062627 A G NCAPD3 Missense_Mutation p.W668R 0.06 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 11 134147682 134147682 T C GLB1L3 Missense_Mutation p.F80L 0.57 deleterious(0) probably_damaging(1) TCGA-L5-A8NJ-01 11 14479168 14479168 G A COPB1 3'UTR 0.05 TCGA-L5-A8NJ-01 11 15267955 15267956 - T INSC 3'UTR 0.21 TCGA-L5-A8NJ-01 11 47178706 47178706 A T C11orf49 Missense_Mutation p.E195V 0.52 deleterious(0) possibly_damaging(0.707) TCGA-L5-A8NJ-01 11 5345083 5345083 T G OR51B2 Silent p.R149R 0.33 TCGA-L5-A8NJ-01 11 55541046 55541046 T G OR5D13 Missense_Mutation p.L45V 0.27 tolerated(0.06) benign(0.144) TCGA-L5-A8NJ-01 11 55594728 55594728 T G OR5L2 Missense_Mutation p.F12V 0.37 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NJ-01 11 55606285 55606285 T C OR5D16 Missense_Mutation p.S20P 0.31 deleterious(0) benign(0.167) TCGA-L5-A8NJ-01 11 55890618 55890618 T C OR8H3 Missense_Mutation p.F257S 0.26 deleterious(0.02) possibly_damaging(0.764) TCGA-L5-A8NJ-01 11 5758323 5758323 G T OR56B1 Missense_Mutation p.V193F 0.16 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NJ-01 11 58602155 58602155 A G GLYATL2 Missense_Mutation p.L211P 0.24 tolerated(1) benign(0.002) TCGA-L5-A8NJ-01 11 64564335 64564335 C A MAP4K2 Missense_Mutation p.G480C 0.54 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NJ-01 11 64603053 64603053 G A CDC42BPG Missense_Mutation p.P600L 0.22 tolerated(0.22) benign(0.007) TCGA-L5-A8NJ-01 11 64948499 64948499 G - AP003068.23 Frame_Shift_Del p.Q167Rfs*107 0.41 TCGA-L5-A8NJ-01 11 67939073 67939073 T A SUV420H1 Missense_Mutation p.M253L 0.62 deleterious(0) benign(0.039) TCGA-L5-A8NJ-01 11 791894 791894 G A SLC25A22 3'UTR 0.26 TCGA-L5-A8NJ-01 11 82595914 82595914 C T PRCP Missense_Mutation p.G61E 0.25 tolerated_low_confidence(0.49) probably_damaging(0.972) TCGA-L5-A8NJ-01 11 89224499 89224499 G A NOX4 5'UTR 0.53 TCGA-L5-A8NJ-01 11 92577768 92577768 G C FAT3 Silent p.G3745G 0.35 TCGA-L5-A8NJ-01 11 93171033 93171033 G A CCDC67 3'UTR 0.33 TCGA-L5-A8NJ-01 12 10133243 10133243 A C CLEC12A Missense_Mutation p.S158R 0.24 tolerated(0.61) benign(0.043) TCGA-L5-A8NJ-01 12 10282624 10282624 A C CLEC7A Missense_Mutation p.F20V 0.29 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 12 110573153 110573153 C G IFT81 Missense_Mutation p.Q203E 0.20 tolerated(0.73) benign(0.01) TCGA-L5-A8NJ-01 12 119596472 119596472 A T SRRM4 3'UTR 0.36 TCGA-L5-A8NJ-01 12 122674687 122674687 G T LRRC43 Missense_Mutation p.V225F 0.31 deleterious(0) benign(0.424) TCGA-L5-A8NJ-01 12 128899999 128899999 G A TMEM132C Missense_Mutation p.G270S 0.31 deleterious(0.01) possibly_damaging(0.765) TCGA-L5-A8NJ-01 12 129190207 129190207 C T TMEM132C Silent p.H898H 0.27 TCGA-L5-A8NJ-01 12 130520953 130520953 T C RP11-474D1.3 RNA 0.10 TCGA-L5-A8NJ-01 12 133250246 133250246 T A POLE Missense_Mutation p.K425M 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NJ-01 12 148762 148762 T A AC026369.1 3'Flank 0.14 TCGA-L5-A8NJ-01 12 15669965 15669965 A G PTPRO Intron 0.52 TCGA-L5-A8NJ-01 12 20792793 20792793 T G PDE3A Missense_Mutation p.L718R 0.35 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NJ-01 12 21392024 21392024 A T SLCO1B1 Silent p.S659S 0.46 TCGA-L5-A8NJ-01 12 32134669 32134669 G T KIAA1551 Missense_Mutation p.Q260H 0.29 tolerated(0.19) possibly_damaging(0.555) TCGA-L5-A8NJ-01 12 32135390 32135390 G C KIAA1551 Missense_Mutation p.D501H 0.44 deleterious(0.03) benign(0.206) TCGA-L5-A8NJ-01 12 32135420 32135420 G T KIAA1551 Nonsense_Mutation p.E511* 0.33 TCGA-L5-A8NJ-01 12 32135882 32135882 G A KIAA1551 Missense_Mutation p.D665N 0.45 deleterious(0.04) probably_damaging(0.952) TCGA-L5-A8NJ-01 12 40681184 40681184 C T LRRK2 Silent p.I844I 0.22 TCGA-L5-A8NJ-01 12 40681261 40681261 C G LRRK2 Missense_Mutation p.S870C 0.16 deleterious(0) benign(0.015) TCGA-L5-A8NJ-01 12 48577990 48577990 G A C12orf68 Missense_Mutation p.G29R 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-L5-A8NJ-01 12 5674779 5674779 G A ANO2 Missense_Mutation p.S891L 0.28 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NJ-01 12 6803463 6803463 A C PIANP 3'UTR 0.53 TCGA-L5-A8NJ-01 12 72956759 72956759 C G TRHDE Missense_Mutation p.Q616E 0.31 deleterious(0) possibly_damaging(0.76) TCGA-L5-A8NJ-01 12 7805406 7805406 C T APOBEC1 Missense_Mutation p.D24N 0.22 tolerated(0.12) benign(0.109) TCGA-L5-A8NJ-01 12 82783605 82783605 G A METTL25 Silent p.Q145Q 0.29 TCGA-L5-A8NJ-01 12 9875187 9875187 A C CLECL1 3'UTR 0.34 TCGA-L5-A8NJ-01 13 103279451 103279451 C G TPP2 Missense_Mutation p.L292V 0.36 tolerated(1) benign(0.045) TCGA-L5-A8NJ-01 13 29601027 29601027 A C MTUS2 Missense_Mutation p.K741T 0.42 deleterious(0.02) benign(0.357) TCGA-L5-A8NJ-01 13 32376475 32376475 C G RXFP2 Missense_Mutation p.S733C 0.35 deleterious(0) possibly_damaging(0.717) TCGA-L5-A8NJ-01 13 36764128 36764128 T G SOHLH2 Missense_Mutation p.N276T 0.18 tolerated(0.15) benign(0.036) TCGA-L5-A8NJ-01 13 76381620 76381620 T A LMO7 Missense_Mutation p.F168I 0.60 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NJ-01 13 88330693 88330693 A T SLITRK5 3'UTR 0.32 TCGA-L5-A8NJ-01 13 98674595 98674595 C T IPO5 3'UTR 0.31 TCGA-L5-A8NJ-01 14 100793573 100793573 C A SLC25A47 Missense_Mutation p.L65M 0.45 tolerated(0.23) probably_damaging(0.945) TCGA-L5-A8NJ-01 14 101348475 101348475 G A RTL1 Missense_Mutation p.T884M 0.42 tolerated(0.08) benign(0.235) TCGA-L5-A8NJ-01 14 104641616 104641616 C T KIF26A Nonsense_Mutation p.R831* 0.43 TCGA-L5-A8NJ-01 14 20483046 20483046 A C OR4K14 Missense_Mutation p.F103V 0.43 deleterious(0.01) benign(0.275) TCGA-L5-A8NJ-01 14 22928146 22928146 C A TRDJ3 Missense_Mutation p.P20H 0.30 unknown(0) TCGA-L5-A8NJ-01 14 29237869 29237869 A C FOXG1 Missense_Mutation p.S462R 0.31 deleterious_low_confidence(0) benign(0.064) TCGA-L5-A8NJ-01 14 38060617 38060617 C T FOXA1 Missense_Mutation p.A458T 0.45 tolerated(0.15) benign(0.009) TCGA-L5-A8NJ-01 14 44975154 44975154 A G FSCB Missense_Mutation p.L346P 0.31 tolerated(0.26) possibly_damaging(0.883) TCGA-L5-A8NJ-01 14 47343308 47343308 T C MDGA2 Missense_Mutation p.R845G 0.42 deleterious(0.03) probably_damaging(0.996) TCGA-L5-A8NJ-01 14 52481849 52481849 C T NID2 Missense_Mutation p.S1058N 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-L5-A8NJ-01 14 57741320 57741320 G A AP5M1 Missense_Mutation p.G145S 0.41 tolerated(0.8) benign(0.001) TCGA-L5-A8NJ-01 14 58060677 58060677 A G SLC35F4 Missense_Mutation p.V126A 0.24 tolerated(0.73) benign(0.001) TCGA-L5-A8NJ-01 14 86088246 86088246 G T FLRT2 Missense_Mutation p.A130S 0.38 tolerated(0.25) possibly_damaging(0.53) TCGA-L5-A8NJ-01 14 92915468 92915468 C A SLC24A4 Missense_Mutation p.A263E 0.44 tolerated(0.32) benign(0.035) TCGA-L5-A8NJ-01 15 23811324 23811324 T G MKRN3 Missense_Mutation p.V132G 0.29 tolerated(0.33) benign(0) TCGA-L5-A8NJ-01 15 24925929 24925929 A G NPAP1 3'UTR 0.20 TCGA-L5-A8NJ-01 15 25219938 25219938 T G SNRPN Intron 0.27 TCGA-L5-A8NJ-01 15 25220656 25220656 A C SNRPN Missense_Mutation p.K52T 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-L5-A8NJ-01 15 25223574 25223574 C T SNRPN Missense_Mutation p.R236C 0.22 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NJ-01 15 25277916 25277916 T G PWAR6 RNA 0.16 TCGA-L5-A8NJ-01 15 27193586 27193586 A C GABRA5 3'UTR 0.13 TCGA-L5-A8NJ-01 15 29091084 29091084 T A GOLGA6L7P RNA 0.18 TCGA-L5-A8NJ-01 15 31360147 31360147 C A TRPM1 Missense_Mutation p.G160V 0.16 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NJ-01 15 35159753 35159753 C T AQR Missense_Mutation p.V1276I 0.18 deleterious(0) probably_damaging(0.983) TCGA-L5-A8NJ-01 15 45974684 45974684 G C SQRDL Missense_Mutation p.M291I 0.44 deleterious(0.04) benign(0.168) TCGA-L5-A8NJ-01 15 54003618 54003618 A C WDR72 Missense_Mutation p.F258V 0.24 deleterious(0) possibly_damaging(0.87) TCGA-L5-A8NJ-01 15 54307240 54307240 T G UNC13C Missense_Mutation p.L714V 0.30 tolerated_low_confidence(0.22) benign(0.004) TCGA-L5-A8NJ-01 15 63991149 63991149 G A HERC1 Silent p.R1561R 0.11 TCGA-L5-A8NJ-01 15 64027049 64027049 C G HERC1 Splice_Site p.X841_splice 0.43 TCGA-L5-A8NJ-01 15 65255939 65255939 A T SPG21 3'UTR 0.15 TCGA-L5-A8NJ-01 15 68473629 68473629 A C PIAS1 Missense_Mutation p.T521P 0.44 tolerated(1) benign(0) TCGA-L5-A8NJ-01 15 75660485 75660485 C T MAN2C1 Silent p.E52E 0.29 TCGA-L5-A8NJ-01 15 75798100 75798100 A G PTPN9 Missense_Mutation p.V295A 0.45 deleterious(0) benign(0.22) TCGA-L5-A8NJ-01 15 75979740 75979740 C T CSPG4 Silent p.T1222T 0.25 TCGA-L5-A8NJ-01 15 89738468 89738468 G A ABHD2 Silent p.E364E 0.28 TCGA-L5-A8NJ-01 15 92977596 92977596 T C ST8SIA2 Missense_Mutation p.L94P 0.21 possibly_damaging(0.809) TCGA-L5-A8NJ-01 16 1036734 1036734 T A SOX8 3'UTR 0.29 TCGA-L5-A8NJ-01 16 19128203 19128203 C G ITPRIPL2 3'UTR 0.25 TCGA-L5-A8NJ-01 16 20996637 20996637 A G DNAH3 Missense_Mutation p.I2476T 0.36 deleterious(0.01) possibly_damaging(0.593) TCGA-L5-A8NJ-01 16 2134252 2134252 G A TSC2 Silent p.E1343E 0.31 TCGA-L5-A8NJ-01 16 23680489 23680489 C G DCTN5 3'UTR 0.65 TCGA-L5-A8NJ-01 16 28334482 28334482 G C SBK1 3'UTR 0.25 TCGA-L5-A8NJ-01 16 31426282 31426282 C T ITGAD Silent p.A751A 0.37 TCGA-L5-A8NJ-01 16 51171156 51171156 T G SALL1 Missense_Mutation p.N1281T 0.31 tolerated(0.18) benign(0.044) TCGA-L5-A8NJ-01 16 71976738 71976738 T G PKD1L3 RNA 0.25 TCGA-L5-A8NJ-01 16 78466480 78466480 C G WWOX Missense_Mutation p.S296C 0.23 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NJ-01 16 81074991 81074991 G T ATMIN Missense_Mutation p.D123Y 0.30 deleterious(0) possibly_damaging(0.847) TCGA-L5-A8NJ-01 16 84163988 84163988 C T HSDL1 Missense_Mutation p.R90Q 0.29 tolerated(0.23) benign(0.094) TCGA-L5-A8NJ-01 17 1303363 1303363 G C YWHAE Silent p.A14A 0.40 TCGA-L5-A8NJ-01 17 38991522 38991522 T C TMEM99 Missense_Mutation p.F252L 0.53 tolerated_low_confidence(0.26) benign(0.294) TCGA-L5-A8NJ-01 17 39323823 39323823 C T KRTAP4-3 3'UTR 0.25 TCGA-L5-A8NJ-01 17 39670979 39670979 G A KRT15 Intron 0.11 TCGA-L5-A8NJ-01 17 39727806 39727806 C T KRT9 Missense_Mutation p.G147S 0.02 tolerated(0.07) unknown(0) TCGA-L5-A8NJ-01 17 42289815 42289815 G A UBTF Missense_Mutation p.T223M 0.36 tolerated(0.11) possibly_damaging(0.871) TCGA-L5-A8NJ-01 17 47373876 47373876 G A ZNF652 3'UTR 0.25 TCGA-L5-A8NJ-01 17 56405068 56405068 C T BZRAP1 Missense_Mutation p.V72M 0.17 tolerated_low_confidence(0.22) benign(0.004) TCGA-L5-A8NJ-01 17 61601570 61601570 C T KCNH6 Silent p.C49C 0.17 TCGA-L5-A8NJ-01 17 71189440 71189440 G A COG1 Missense_Mutation p.D78N 0.32 tolerated(0.28) possibly_damaging(0.497) TCGA-L5-A8NJ-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.79 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NJ-01 17 79478583 79478583 A C ACTG1 Missense_Mutation p.S145A 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.899) TCGA-L5-A8NJ-01 18 12125669 12125669 A G ANKRD62 Missense_Mutation p.T617A 0.68 deleterious(0.03) possibly_damaging(0.899) TCGA-L5-A8NJ-01 18 21519301 21519301 C G LAMA3 Missense_Mutation p.P2993A 0.30 possibly_damaging(0.562) TCGA-L5-A8NJ-01 18 21519331 21519331 C A LAMA3 Missense_Mutation p.Q3003K 0.27 benign(0.009) TCGA-L5-A8NJ-01 18 31319460 31319460 T G ASXL3 Missense_Mutation p.L698V 0.86 probably_damaging(0.942) TCGA-L5-A8NJ-01 18 65180368 65180368 T C DSEL Missense_Mutation p.K503R 0.76 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 19 10572336 10572336 C T PDE4A Missense_Mutation p.R534C 0.44 deleterious(0) probably_damaging(1) TCGA-L5-A8NJ-01 19 31769655 31769655 G T TSHZ3 Silent p.T348T 0.71 TCGA-L5-A8NJ-01 19 33486951 33486951 G A RHPN2 Silent p.I467I 0.29 TCGA-L5-A8NJ-01 19 37488332 37488332 G A ZNF568 Missense_Mutation p.R516Q 0.24 tolerated(0.82) possibly_damaging(0.501) TCGA-L5-A8NJ-01 19 37676130 37676130 C G ZNF585B Nonstop_Mutation p.*770Sext*30 0.33 TCGA-L5-A8NJ-01 19 38380066 38380066 T A WDR87 Missense_Mutation p.L1376F 0.23 probably_damaging(0.916) TCGA-L5-A8NJ-01 19 39789183 39789183 G T IFNL1 3'UTR 0.18 TCGA-L5-A8NJ-01 19 39804743 39804743 C T LRFN1 Missense_Mutation p.A412T 0.19 tolerated(1) benign(0.008) TCGA-L5-A8NJ-01 19 39899694 39899694 G T ZFP36 3'UTR 0.34 TCGA-L5-A8NJ-01 19 42383164 42383164 G A CD79A Missense_Mutation p.A62T 0.38 tolerated(0.46) benign(0.013) TCGA-L5-A8NJ-01 19 43421932 43421932 A G PSG6 Missense_Mutation p.S5P 0.23 deleterious(0.03) benign(0.076) TCGA-L5-A8NJ-01 19 4361666 4361666 G A SH3GL1 Silent p.G346G 0.38 TCGA-L5-A8NJ-01 19 51516934 51516934 G A KLK10 3'UTR 0.20 TCGA-L5-A8NJ-01 19 54669205 54669205 C A TMC4 Missense_Mutation p.C304F 0.30 deleterious(0.05) benign(0.352) TCGA-L5-A8NJ-01 19 56972109 56972109 C G ZNF667 Missense_Mutation p.D37H 0.30 deleterious(0.02) possibly_damaging(0.455) TCGA-L5-A8NJ-01 19 5917210 5917210 C T RANBP3 3'UTR 0.42 TCGA-L5-A8NJ-01 19 9083725 9083725 A G MUC16 Missense_Mutation p.L2697P 0.32 unknown(0) TCGA-L5-A8NJ-01 1 112525093 112525093 G A KCND3 Missense_Mutation p.R86W 0.21 deleterious(0) probably_damaging(0.978) TCGA-L5-A8NJ-01 1 13001297 13001297 T A PRAMEF6 Missense_Mutation p.K129M 0.22 tolerated(0.14) benign(0.003) TCGA-L5-A8NJ-01 1 142803429 142803429 A C RP11-423O2.5 RNA 0.10 TCGA-L5-A8NJ-01 1 145282336 145282336 G T NOTCH2NL 3'UTR 0.38 TCGA-L5-A8NJ-01 1 148024806 148024806 G A NBPF14 Missense_Mutation p.P70L 0.38 tolerated(0.2) benign(0.032) TCGA-L5-A8NJ-01 1 150255816 150255816 G A C1orf51 Missense_Mutation p.D47N 0.51 tolerated(0.07) benign(0.027) TCGA-L5-A8NJ-01 1 151509274 151509274 C T CGN Silent p.D1125D 0.05 TCGA-L5-A8NJ-01 1 156434243 156434243 G T MEF2D 3'UTR 0.68 TCGA-L5-A8NJ-01 1 158325192 158325192 T G CD1E Missense_Mutation p.I153S 0.26 tolerated(0.41) benign(0.002) TCGA-L5-A8NJ-01 1 17084127 17084127 A T MST1L RNA 0.06 TCGA-L5-A8NJ-01 1 176832410 176832410 A C ASTN1 3'UTR 0.39 TCGA-L5-A8NJ-01 1 177030253 177030253 C T ASTN1 Silent p.S144S 0.74 TCGA-L5-A8NJ-01 1 185962449 185962449 T C HMCN1 Intron 0.37 TCGA-L5-A8NJ-01 1 185962471 185962471 C T HMCN1 Intron 0.66 TCGA-L5-A8NJ-01 1 196659363 196659363 C T CFH Missense_Mutation p.R444C 0.67 deleterious(0) benign(0.253) TCGA-L5-A8NJ-01 1 215794365 215794365 C A KCTD3 3'UTR 0.47 TCGA-L5-A8NJ-01 1 247587770 247587770 C T NLRP3 Missense_Mutation p.P342L 0.32 tolerated(0.12) probably_damaging(1) TCGA-L5-A8NJ-01 1 34052206 34052206 G A CSMD2 Missense_Mutation p.R2319C 0.46 deleterious(0) possibly_damaging(0.893) TCGA-L5-A8NJ-01 1 39812766 39812766 C G MACF1 Intron 0.38 TCGA-L5-A8NJ-01 1 39900196 39900196 T A MACF1 Silent p.T3830T 0.37 TCGA-L5-A8NJ-01 1 66821268 66821268 A C PDE4B Missense_Mutation p.N269T 0.33 deleterious(0.04) probably_damaging(0.999) TCGA-L5-A8NJ-01 1 71870610 71870610 A T NEGR1 3'UTR 0.43 TCGA-L5-A8NJ-01 1 77094564 77094564 A T ST6GALNAC3 3'UTR 0.46 TCGA-L5-A8NJ-01 1 77334346 77334346 G A ST6GALNAC5 Silent p.A60A 0.41 TCGA-L5-A8NJ-01 1 93091470 93091470 C A EVI5 Nonsense_Mutation p.E501* 0.50 TCGA-L5-A8NJ-01 1 93988967 93988967 A C FNBP1L Missense_Mutation p.E87D 0.43 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 1 957614 957614 C T AGRN Silent p.L79L 0.35 TCGA-L5-A8NJ-01 20 2375946 2375946 T G TGM6 Silent p.T96T 0.35 TCGA-L5-A8NJ-01 20 39830877 39830877 C T ZHX3 Missense_Mutation p.V894M 0.26 tolerated(0.14) benign(0.032) TCGA-L5-A8NJ-01 20 44258464 44258464 G A WFDC10A Silent p.Q4Q 0.27 TCGA-L5-A8NJ-01 20 44845598 44845598 G A CDH22 Silent p.R235R 0.23 TCGA-L5-A8NJ-01 20 61386239 61386239 G A NTSR1 Splice_Site p.X306_splice 0.24 TCGA-L5-A8NJ-01 21 11049551 11049551 A G BAGE2 RNA 0.09 TCGA-L5-A8NJ-01 21 31538725 31538725 A C CLDN17 Missense_Mutation p.L71V 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A8NJ-01 21 44589332 44589332 G A CRYAA Silent p.S41S 0.59 TCGA-L5-A8NJ-01 22 18844968 18844968 G T BCRP7 Intron 0.56 TCGA-L5-A8NJ-01 22 19958220 19958222 CTT - ARVCF 3'UTR 0.10 TCGA-L5-A8NJ-01 22 30736779 30736780 - CTT SF3A1 In_Frame_Ins p.E364dup 0.35 TCGA-L5-A8NJ-01 22 39883741 39883741 C T MGAT3 Missense_Mutation p.P130L 0.33 tolerated_low_confidence(0.29) benign(0) TCGA-L5-A8NJ-01 22 51011955 51011955 C T CPT1B Missense_Mutation p.G387E 0.39 deleterious(0) benign(0.038) TCGA-L5-A8NJ-01 2 109368451 109368451 G A RANBP2 Splice_Site p.X585_splice 0.32 TCGA-L5-A8NJ-01 2 114351820 114351820 G A WASH2P RNA 0.23 TCGA-L5-A8NJ-01 2 132021429 132021429 C A POTEE Missense_Mutation p.H801N 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.738) TCGA-L5-A8NJ-01 2 140989447 140989447 T C LRP1B 3'UTR 0.25 TCGA-L5-A8NJ-01 2 152276824 152276824 G A RIF1 Silent p.E208E 0.84 TCGA-L5-A8NJ-01 2 168726636 168726636 G - B3GALT1 3'UTR 0.18 TCGA-L5-A8NJ-01 2 179455377 179455377 T G TTN Missense_Mutation p.S20359R 0.38 TCGA-L5-A8NJ-01 2 179622556 179622556 T C TTN Missense_Mutation p.K3464R 0.74 TCGA-L5-A8NJ-01 2 24952369 24952369 G A NCOA1 Splice_Site p.X963_splice 0.08 TCGA-L5-A8NJ-01 2 27375630 27375630 C T TCF23 Silent p.T180T 0.17 TCGA-L5-A8NJ-01 2 31489489 31489489 A G EHD3 Silent p.K509K 0.27 TCGA-L5-A8NJ-01 2 32475733 32475733 A G NLRC4 Silent p.G400G 0.29 TCGA-L5-A8NJ-01 2 45233287 45233287 A C SIX2 3'UTR 0.15 TCGA-L5-A8NJ-01 2 45616543 45616543 A G SRBD1 Missense_Mutation p.L965P 0.36 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NJ-01 3 111831885 111831885 T G C3orf52 Intron 0.23 TCGA-L5-A8NJ-01 3 122274685 122274685 C T PARP9 Silent p.G146G 0.28 TCGA-L5-A8NJ-01 3 124946725 124946725 C T ZNF148 3'UTR 0.46 TCGA-L5-A8NJ-01 3 130119948 130119948 A C COL6A5 Missense_Mutation p.K1355N 0.53 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NJ-01 3 164710142 164710142 A C SI Missense_Mutation p.L1629V 0.19 deleterious(0) probably_damaging(0.964) TCGA-L5-A8NJ-01 3 165555218 165555218 C A BCHE 5'UTR 0.23 TCGA-L5-A8NJ-01 3 167339318 167339318 A G WDR49 Intron 0.19 TCGA-L5-A8NJ-01 3 176771694 176771694 G A TBL1XR1 Missense_Mutation p.S24L 0.41 deleterious(0) probably_damaging(0.982) TCGA-L5-A8NJ-01 3 180361933 180361933 A C CCDC39 Missense_Mutation p.L547R 0.24 tolerated(0.05) possibly_damaging(0.452) TCGA-L5-A8NJ-01 3 38592230 38592230 T G SCN5A Missense_Mutation p.K1878T 0.39 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 3 49946704 49946704 G A MON1A Silent p.N600N 0.17 TCGA-L5-A8NJ-01 3 68594496 68594496 A C FAM19A1 3'UTR 0.41 TCGA-L5-A8NJ-01 3 77600132 77600132 T G ROBO2 Missense_Mutation p.V424G 0.48 deleterious(0) possibly_damaging(0.637) TCGA-L5-A8NJ-01 3 89259074 89259074 T A EPHA3 Missense_Mutation p.V73D 0.36 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NJ-01 3 97466312 97466312 C T EPHA6 Silent p.V1058V 0.47 TCGA-L5-A8NJ-01 4 122686210 122686210 C G AC079341.1 5'UTR 0.31 TCGA-L5-A8NJ-01 4 138442016 138442016 C A PCDH18 3'UTR 0.16 TCGA-L5-A8NJ-01 4 158284035 158284035 G T GRIA2 Missense_Mutation p.A831S 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NJ-01 4 160265191 160265191 G A RAPGEF2 Silent p.K925K 0.37 TCGA-L5-A8NJ-01 4 16504663 16504663 G T LDB2 Intron 0.41 TCGA-L5-A8NJ-01 4 183064315 183064315 A G AC108142.1 RNA 0.22 TCGA-L5-A8NJ-01 4 190861986 190861986 T G FRG1 5'UTR 0.38 TCGA-L5-A8NJ-01 4 3231719 3231719 G A HTT Missense_Mutation p.A2739T 0.46 benign(0.001) TCGA-L5-A8NJ-01 4 46252427 46252427 G C GABRA2 Missense_Mutation p.D418E 0.43 deleterious(0.01) probably_damaging(0.993) TCGA-L5-A8NJ-01 5 108672692 108672692 T C PJA2 3'UTR 0.30 TCGA-L5-A8NJ-01 5 111066239 111066239 G A NREP 3'UTR 0.45 TCGA-L5-A8NJ-01 5 114858367 114858367 C T FEM1C 3'UTR 0.31 TCGA-L5-A8NJ-01 5 114878803 114878803 C T FEM1C Missense_Mutation p.E130K 0.29 deleterious(0.02) benign(0.201) TCGA-L5-A8NJ-01 5 139495369 139495369 G A PURA 3'UTR 0.51 TCGA-L5-A8NJ-01 5 140481002 140481002 G A PCDHB3 Missense_Mutation p.V257I 0.27 tolerated_low_confidence(0.72) benign(0.003) TCGA-L5-A8NJ-01 5 140767797 140767797 T A PCDHGB4 Missense_Mutation p.F116I 0.25 tolerated(1) benign(0.007) TCGA-L5-A8NJ-01 5 140768512 140768512 T C PCDHGB4 Missense_Mutation p.I354T 0.27 deleterious(0) probably_damaging(0.97) TCGA-L5-A8NJ-01 5 140769142 140769142 C T PCDHGB4 Missense_Mutation p.A564V 0.30 tolerated(0.07) benign(0.081) TCGA-L5-A8NJ-01 5 143854202 143854202 A C KCTD16 3'UTR 0.32 TCGA-L5-A8NJ-01 5 150924030 150924030 A C FAT2 Missense_Mutation p.F2220V 0.25 probably_damaging(1) TCGA-L5-A8NJ-01 5 153857302 153857302 G A HAND1 Silent p.G89G 0.36 TCGA-L5-A8NJ-01 5 156641262 156641262 A T ITK Missense_Mutation p.K129M 0.28 tolerated(0.09) benign(0.063) TCGA-L5-A8NJ-01 5 169108824 169108824 T C DOCK2 Silent p.L183L 0.27 TCGA-L5-A8NJ-01 5 169111276 169111276 G A DOCK2 Missense_Mutation p.R228K 0.32 tolerated(0.99) benign(0.016) TCGA-L5-A8NJ-01 5 175934964 175934964 C A FAF2 3'UTR 0.30 TCGA-L5-A8NJ-01 5 175934975 175934975 A C FAF2 3'UTR 0.29 TCGA-L5-A8NJ-01 5 178392970 178392970 A C ZNF454 Missense_Mutation p.K522T 0.32 deleterious(0) possibly_damaging(0.901) TCGA-L5-A8NJ-01 5 26881552 26881552 A C CDH9 Missense_Mutation p.L688R 0.38 tolerated(0.35) possibly_damaging(0.476) TCGA-L5-A8NJ-01 5 26886180 26886180 C T CDH9 Missense_Mutation p.V509I 0.20 tolerated(1) benign(0.003) TCGA-L5-A8NJ-01 5 31323178 31323178 C G CDH6 Silent p.V712V 0.22 TCGA-L5-A8NJ-01 5 32711945 32711945 C T NPR3 Silent p.A21A 0.31 TCGA-L5-A8NJ-01 5 33937201 33937201 T C RXFP3 Missense_Mutation p.L119P 0.36 deleterious(0.01) possibly_damaging(0.903) TCGA-L5-A8NJ-01 5 34005897 34005897 A T AMACR Missense_Mutation p.L119I 0.26 tolerated(0.57) benign(0.015) TCGA-L5-A8NJ-01 5 3599410 3599410 T C IRX1 Silent p.A116A 0.17 TCGA-L5-A8NJ-01 5 38407099 38407099 A C EGFLAM Missense_Mutation p.K333T 0.20 tolerated(0.47) benign(0.003) TCGA-L5-A8NJ-01 5 41017990 41017990 G A MROH2B Missense_Mutation p.A949V 0.17 tolerated(0.12) benign(0.068) TCGA-L5-A8NJ-01 5 53751848 53751848 G A HSPB3 Missense_Mutation p.V77M 0.58 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 5 63621154 63621154 T C RNF180 Silent p.L457L 0.30 TCGA-L5-A8NJ-01 5 65349460 65349460 A G ERBB2IP Missense_Mutation p.T772A 0.33 tolerated_low_confidence(0.35) benign(0.002) TCGA-L5-A8NJ-01 5 74325642 74325642 G A GCNT4 Missense_Mutation p.S74L 0.23 deleterious(0.02) benign(0.017) TCGA-L5-A8NJ-01 5 83433072 83433072 T C EDIL3 Silent p.R152R 0.29 TCGA-L5-A8NJ-01 6 108066254 108066254 C T SCML4 Missense_Mutation p.R194Q 0.42 tolerated(0.08) benign(0.086) TCGA-L5-A8NJ-01 6 111696316 111696316 G A REV3L Missense_Mutation p.S1081L 0.38 tolerated(0.41) benign(0.017) TCGA-L5-A8NJ-01 6 116757008 116757008 T G DSE Silent p.T459T 0.89 TCGA-L5-A8NJ-01 6 123653049 123653049 T C TRDN Silent p.K482K 0.49 TCGA-L5-A8NJ-01 6 126080933 126080933 A C HEY2 Missense_Mutation p.E333D 0.45 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NJ-01 6 144508452 144508452 C A STX11 Missense_Mutation p.Q230K 0.85 deleterious(0.03) probably_damaging(0.963) TCGA-L5-A8NJ-01 6 152668334 152668334 A C SYNE1 Missense_Mutation p.L3980V 0.39 possibly_damaging(0.471) TCGA-L5-A8NJ-01 6 160952604 160952604 T G LPA 3'UTR 0.29 TCGA-L5-A8NJ-01 6 26463595 26463595 T - BTN2A1 Frame_Shift_Del p.A186Rfs*4 0.27 TCGA-L5-A8NJ-01 6 32726627 32726627 G A HLA-DQB2 Nonsense_Mutation p.R216* 0.43 TCGA-L5-A8NJ-01 6 41126735 41126735 G A TREM2 Silent p.L184L 0.33 TCGA-L5-A8NJ-01 6 50812392 50812392 T C TFAP2B 3'UTR 0.50 TCGA-L5-A8NJ-01 6 55739327 55739327 T G BMP5 Silent p.R113R 0.32 TCGA-L5-A8NJ-01 6 69665964 69665964 C A BAI3 Missense_Mutation p.T415K 0.86 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 6 86224314 86224314 G A SNX14 Missense_Mutation p.R768C 0.42 tolerated(0.21) possibly_damaging(0.836) TCGA-L5-A8NJ-01 6 90604691 90604691 A C GJA10 Missense_Mutation p.E168D 0.40 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 7 100855141 100855141 G A PLOD3 Silent p.L406L 0.21 TCGA-L5-A8NJ-01 7 106827032 106827032 A T HBP1 Missense_Mutation p.H224L 0.36 deleterious(0) possibly_damaging(0.871) TCGA-L5-A8NJ-01 7 122338319 122338319 A G RNF133 Silent p.I218I 0.65 TCGA-L5-A8NJ-01 7 130418035 130418035 G A KLF14 Missense_Mutation p.R276C 0.66 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NJ-01 7 140269504 140269504 C T DENND2A Missense_Mutation p.R494Q 0.31 tolerated(0.05) possibly_damaging(0.84) TCGA-L5-A8NJ-01 7 143056068 143056068 C - FAM131B Frame_Shift_Del p.Q107Kfs*7 0.26 TCGA-L5-A8NJ-01 7 143095515 143095515 G A EPHA1 Silent p.L455L 0.57 TCGA-L5-A8NJ-01 7 143955883 143955883 A C OR2A7 Missense_Mutation p.F280C 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NJ-01 7 144097346 144097346 G A NOBOX Missense_Mutation p.R302C 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A8NJ-01 7 15666456 15666456 A G MEOX2 Missense_Mutation p.L202P 0.31 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NJ-01 7 16722452 16722452 T A BZW2 Missense_Mutation p.F129L 0.28 tolerated(0.45) benign(0.001) TCGA-L5-A8NJ-01 7 21784185 21784185 A G DNAH11 Missense_Mutation p.R2769G 0.19 benign(0.016) TCGA-L5-A8NJ-01 7 29606312 29606312 G A PRR15 Missense_Mutation p.D123N 0.15 tolerated_low_confidence(0.16) benign(0.139) TCGA-L5-A8NJ-01 7 37251031 37251031 T C ELMO1 Missense_Mutation p.K349R 0.18 tolerated(1) probably_damaging(0.999) TCGA-L5-A8NJ-01 7 6012975 6012975 C G PMS2 3'UTR 0.09 TCGA-L5-A8NJ-01 7 6548686 6548686 C T GRID2IP Missense_Mutation p.R677H 0.23 deleterious(0) possibly_damaging(0.542) TCGA-L5-A8NJ-01 7 72419408 72419408 C T POM121 3'UTR 0.17 TCGA-L5-A8NJ-01 7 87913376 87913376 G A STEAP4 Missense_Mutation p.A70V 0.40 deleterious(0.01) possibly_damaging(0.8) TCGA-L5-A8NJ-01 7 92236475 92236475 C T CDK6 3'UTR 0.21 TCGA-L5-A8NJ-01 7 92763306 92763306 C T SAMD9L Missense_Mutation p.C660Y 0.22 deleterious(0) possibly_damaging(0.485) TCGA-L5-A8NJ-01 7 93518475 93518475 T C TFPI2 Missense_Mutation p.E111G 0.19 tolerated(0.2) probably_damaging(0.913) TCGA-L5-A8NJ-01 8 105405087 105405087 C T DPYS Silent p.T456T 0.37 TCGA-L5-A8NJ-01 8 125989785 125989785 C A ZNF572 Silent p.S425S 0.20 TCGA-L5-A8NJ-01 8 133198348 133198348 A T KCNQ3 Missense_Mutation p.L156H 0.27 deleterious(0) probably_damaging(0.952) TCGA-L5-A8NJ-01 8 133899062 133899062 A T TG Missense_Mutation p.Q482L 0.33 tolerated(0.07) benign(0.118) TCGA-L5-A8NJ-01 8 14095139 14095139 C A SGCZ Missense_Mutation p.R129I 0.27 deleterious(0.02) benign(0.392) TCGA-L5-A8NJ-01 8 32579408 32579408 T C NRG1 Intron 0.39 TCGA-L5-A8NJ-01 8 39785408 39785408 T G IDO1 Missense_Mutation p.F306V 0.21 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NJ-01 8 64099030 64099070 GTTATGGCTATCCACCTAGTTCTCTTGGGAGAGCTATTACT - YTHDF3 Frame_Shift_Del p.S153Rfs*9 0.28 TCGA-L5-A8NJ-01 8 65537027 65537027 T A CYP7B1 Missense_Mutation p.K64N 0.31 tolerated(0.08) possibly_damaging(0.544) TCGA-L5-A8NJ-01 8 85799845 85799845 A G RALYL Missense_Mutation p.Q244R 0.20 tolerated(0.47) possibly_damaging(0.503) TCGA-L5-A8NJ-01 8 89053189 89053189 A T MMP16 3'UTR 0.56 TCGA-L5-A8NJ-01 8 91804183 91804183 C G NECAB1 Missense_Mutation p.H23Q 0.39 tolerated(0.61) unknown(0) TCGA-L5-A8NJ-01 8 97172823 97172823 G A GDF6 Missense_Mutation p.S33L 0.26 tolerated(0.13) benign(0.003) TCGA-L5-A8NJ-01 8 97270593 97270593 A C MTERFD1 Missense_Mutation p.F109C 0.36 tolerated(0.18) possibly_damaging(0.463) TCGA-L5-A8NJ-01 9 104449172 104449172 C T GRIN3A Missense_Mutation p.R337Q 0.25 tolerated(0.6) benign(0.004) TCGA-L5-A8NJ-01 9 107367226 107367226 A C OR13C2 Missense_Mutation p.I228S 0.32 deleterious(0) possibly_damaging(0.85) TCGA-L5-A8NJ-01 9 107379691 107379691 T A OR13C9 Missense_Mutation p.K265N 0.25 deleterious(0) possibly_damaging(0.609) TCGA-L5-A8NJ-01 9 118666897 118666897 G T LINC00474 RNA 0.38 TCGA-L5-A8NJ-01 9 118950282 118950282 A T PAPPA Missense_Mutation p.E422V 0.30 deleterious(0.01) possibly_damaging(0.728) TCGA-L5-A8NJ-01 9 119159790 119159790 T G PAPPA 3'UTR 0.24 TCGA-L5-A8NJ-01 9 130692076 130692076 C A PIP5KL1 Missense_Mutation p.R40L 0.33 tolerated(0.4) benign(0.028) TCGA-L5-A8NJ-01 9 136287534 136287534 G A ADAMTS13 5'UTR 0.19 TCGA-L5-A8NJ-01 9 138651554 138651554 C T KCNT1 Missense_Mutation p.A295V 0.28 deleterious(0.02) benign(0.216) TCGA-L5-A8NJ-01 9 14848682 14848682 G C FREM1 Silent p.P414P 0.42 TCGA-L5-A8NJ-01 9 16416655 16416655 T A BNC2 3'UTR 0.47 TCGA-L5-A8NJ-01 9 17457656 17457656 A G CNTLN Silent p.S1083S 0.40 TCGA-L5-A8NJ-01 9 27197501 27197501 T G TEK Missense_Mutation p.L605V 0.32 deleterious(0.02) benign(0.4) TCGA-L5-A8NJ-01 9 27229191 27229191 T G TEK Silent p.T1112T 0.46 TCGA-L5-A8NJ-01 9 34834584 34834584 T C FAM205B RNA 0.23 TCGA-L5-A8NJ-01 9 34835493 34835493 T G FAM205B RNA 0.29 TCGA-L5-A8NJ-01 9 35809417 35809417 G A NPR2 Missense_Mutation p.R1040Q 0.09 tolerated(0.14) benign(0.018) TCGA-L5-A8NJ-01 9 72091020 72091020 A C APBA1 Missense_Mutation p.S414A 0.29 deleterious(0.04) benign(0.183) TCGA-L5-A8NJ-01 9 75567891 75567891 A C ALDH1A1 Nonsense_Mutation p.L9* 0.22 TCGA-L5-A8NJ-01 9 84562504 84562504 A G RP11-383M4.6 Intron 0.17 TCGA-L5-A8NJ-01 X 101823513 101823513 T C NXF4 RNA 0.30 TCGA-L5-A8NJ-01 X 114425637 114425637 C T RBMXL3 Missense_Mutation p.H545Y 0.42 deleterious_low_confidence(0.01) benign(0.152) TCGA-L5-A8NJ-01 X 118678377 118678377 T G CXorf56 Missense_Mutation p.K121T 0.27 tolerated(0.07) possibly_damaging(0.604) TCGA-L5-A8NJ-01 X 122754756 122754756 A C THOC2 Splice_Site p.X1425_splice 0.46 TCGA-L5-A8NJ-01 X 123215374 123215374 C T STAG2 Missense_Mutation p.H974Y 1.00 deleterious(0) probably_damaging(0.969) TCGA-L5-A8NJ-01 X 123654589 123654589 T G TENM1 Missense_Mutation p.S1027R 0.39 tolerated(0.4) benign(0.125) TCGA-L5-A8NJ-01 X 144337273 144337273 C A SPANXN1 Missense_Mutation p.A53E 0.35 tolerated(0.13) benign(0.001) TCGA-L5-A8NJ-01 X 152228032 152228032 G A PNMA3 3'UTR 0.46 TCGA-L5-A8NJ-01 X 18220001 18220001 T C BEND2 Missense_Mutation p.T323A 0.57 tolerated(0.44) benign(0.207) TCGA-L5-A8NJ-01 X 27766867 27766867 G T DCAF8L2 Nonsense_Mutation p.E619* 0.33 TCGA-L5-A8NJ-01 X 30261075 30261075 A G MAGEB4 Missense_Mutation p.R275G 0.32 deleterious(0.01) possibly_damaging(0.464) TCGA-L5-A8NJ-01 X 37026509 37026509 G A FAM47C Missense_Mutation p.R9Q 0.51 tolerated(0.26) benign(0.2) TCGA-L5-A8NJ-01 X 63005071 63005071 A C MIR1468 3'Flank 0.47 TCGA-L5-A8NJ-01 X 75649975 75649975 T C MAGEE1 Missense_Mutation p.L551P 0.57 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NJ-01 X 79700466 79700466 T G FAM46D 3'UTR 0.37 TCGA-L5-A8NJ-01 X 91873794 91873794 C T PCDH11X Missense_Mutation p.A1300V 0.82 tolerated_low_confidence(0.14) benign(0.034) TCGA-L5-A8NK-01 10 115515071 115515071 G A PLEKHS1 Intron 0.15 TCGA-L5-A8NK-01 10 124752339 124752339 C T IKZF5 3'UTR 0.20 TCGA-L5-A8NK-01 10 129903622 129903622 C T MKI67 Missense_Mutation p.R2161K 0.16 tolerated(1) benign(0.002) TCGA-L5-A8NK-01 10 135025251 135025251 C T KNDC1 Silent p.A1375A 0.23 TCGA-L5-A8NK-01 10 135098607 135098607 G A TUBGCP2 Missense_Mutation p.S697L 0.21 tolerated(0.09) benign(0.102) TCGA-L5-A8NK-01 10 17737170 17737170 G T STAM Missense_Mutation p.D220Y 0.16 deleterious(0) probably_damaging(1) TCGA-L5-A8NK-01 10 34400148 34400148 C T PARD3 Silent p.A1340A 0.12 TCGA-L5-A8NK-01 10 34649188 34649188 C G PARD3 Splice_Site p.X570_splice 0.16 TCGA-L5-A8NK-01 10 72327301 72327301 G A PALD1 3'UTR 0.25 TCGA-L5-A8NK-01 10 91478507 91478507 C T KIF20B Missense_Mutation p.H438Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-L5-A8NK-01 11 119025273 119025273 G A ABCG4 Silent p.V176V 0.12 TCGA-L5-A8NK-01 11 122928600 122928600 G C HSPA8 Missense_Mutation p.Q595E 0.36 tolerated_low_confidence(0.07) benign(0.357) TCGA-L5-A8NK-01 11 17434248 17434248 G A ABCC8 Nonsense_Mutation p.R841* 0.35 TCGA-L5-A8NK-01 11 3656575 3656575 C A ART5 3'Flank 0.27 TCGA-L5-A8NK-01 11 43904227 43904227 C T ALKBH3 Nonsense_Mutation p.R9* 0.15 TCGA-L5-A8NK-01 11 4928760 4928760 C T OR51A7 Missense_Mutation p.S54L 0.33 deleterious(0.01) benign(0.365) TCGA-L5-A8NK-01 11 57584990 57584990 G A CTNND1 3'UTR 0.32 TCGA-L5-A8NK-01 11 59282609 59282609 C T OR4D9 Missense_Mutation p.S75F 0.29 deleterious(0.04) benign(0.078) TCGA-L5-A8NK-01 11 6631827 6631827 G C ILK Missense_Mutation p.K448N 0.35 deleterious(0) possibly_damaging(0.886) TCGA-L5-A8NK-01 11 73107274 73107274 G T RELT 3'UTR 0.75 TCGA-L5-A8NK-01 11 74638464 74638464 A C XRRA1 Missense_Mutation p.V157G 0.10 deleterious(0) probably_damaging(0.987) TCGA-L5-A8NK-01 11 76237670 76237670 G A C11orf30 Silent p.G662G 0.10 TCGA-L5-A8NK-01 11 89531759 89531759 T C TRIM49 Missense_Mutation p.I300V 0.19 tolerated(0.16) benign(0.04) TCGA-L5-A8NK-01 12 103238176 103238176 T C PAH Missense_Mutation p.K335E 0.24 deleterious(0.01) benign(0.043) TCGA-L5-A8NK-01 12 10588462 10588462 C G KLRC2 Missense_Mutation p.E42Q 0.09 deleterious(0) possibly_damaging(0.836) TCGA-L5-A8NK-01 12 111958776 111958776 G C ATXN2 Missense_Mutation p.S393C 0.25 probably_damaging(0.95) TCGA-L5-A8NK-01 12 112509837 112509837 C - NAA25 Frame_Shift_Del p.E300Kfs*4 0.10 TCGA-L5-A8NK-01 12 114397134 114397134 C T RBM19 Missense_Mutation p.D152N 0.10 deleterious(0.02) probably_damaging(0.994) TCGA-L5-A8NK-01 12 11546807 11546807 G C PRB2 Missense_Mutation p.Q69E 0.15 tolerated(0.06) unknown(0) TCGA-L5-A8NK-01 12 132629510 132629510 G A NOC4L Missense_Mutation p.V77I 0.30 tolerated(0.32) benign(0.071) TCGA-L5-A8NK-01 12 133219481 133219481 G A POLE Silent p.H1551H 0.44 TCGA-L5-A8NK-01 12 133365747 133365747 C G GOLGA3 Missense_Mutation p.E893Q 0.19 tolerated(0.08) possibly_damaging(0.877) TCGA-L5-A8NK-01 12 133365805 133365805 C A GOLGA3 Missense_Mutation p.R873S 0.19 deleterious(0) benign(0.209) TCGA-L5-A8NK-01 12 20903690 20903690 G C SLCO1C1 Missense_Mutation p.R627T 0.26 deleterious(0.03) benign(0.297) TCGA-L5-A8NK-01 12 26592183 26592183 G C ITPR2 Missense_Mutation p.R2174G 0.16 tolerated(0.12) benign(0.008) TCGA-L5-A8NK-01 12 2787022 2787022 G A CACNA1C Missense_Mutation p.D1742N 0.12 tolerated(0.11) benign(0.12) TCGA-L5-A8NK-01 12 28515424 28515424 C T CCDC91 Silent p.L210L 0.26 TCGA-L5-A8NK-01 12 39170060 39170060 C G CPNE8 Missense_Mutation p.E151Q 0.17 tolerated(0.09) probably_damaging(0.997) TCGA-L5-A8NK-01 12 40921250 40921250 C A MUC19 Intron 0.22 TCGA-L5-A8NK-01 12 44781966 44781966 G C TMEM117 Missense_Mutation p.L352F 0.20 tolerated(0.73) benign(0.136) TCGA-L5-A8NK-01 12 45567215 45567215 C A PLEKHA8P1 RNA 0.09 TCGA-L5-A8NK-01 12 55420518 55420518 C T NEUROD4 Missense_Mutation p.R99W 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A8NK-01 12 57485167 57485167 C T NAB2 Nonsense_Mutation p.Q115* 0.18 TCGA-L5-A8NK-01 12 89984419 89984419 T C ATP2B1 3'UTR 0.11 TCGA-L5-A8NK-01 12 96380981 96380981 G C HAL Silent p.L305L 0.20 TCGA-L5-A8NK-01 13 100638392 100638392 G A ZIC2 3'UTR 0.88 TCGA-L5-A8NK-01 13 101710386 101710386 A G NALCN Missense_Mutation p.L1643P 0.15 deleterious(0.02) benign(0.036) TCGA-L5-A8NK-01 13 108518473 108518473 G C FAM155A Missense_Mutation p.L158V 0.30 tolerated(0.71) benign(0.218) TCGA-L5-A8NK-01 13 20796168 20796168 G A GJB6 3'UTR 0.62 TCGA-L5-A8NK-01 13 20796587 20796587 G A GJB6 3'UTR 0.34 TCGA-L5-A8NK-01 13 24798292 24798292 G A SPATA13 Missense_Mutation p.V409I 0.46 tolerated_low_confidence(0.05) benign(0.446) TCGA-L5-A8NK-01 13 28626732 28626732 G A FLT3 Silent p.S188S 0.43 TCGA-L5-A8NK-01 13 35733522 35733522 G A NBEA Missense_Mutation p.D1072N 0.36 tolerated_low_confidence(0.1) benign(0.004) TCGA-L5-A8NK-01 14 104206306 104206306 G A PPP1R13B Missense_Mutation p.P816L 0.09 tolerated(0.2) benign(0.075) TCGA-L5-A8NK-01 14 20483328 20483328 C T OR4K14 Missense_Mutation p.V9M 0.38 deleterious(0.01) benign(0.411) TCGA-L5-A8NK-01 14 21623201 21623201 G T OR5AU1 Silent p.I328I 0.27 TCGA-L5-A8NK-01 14 23306043 23306043 G A MMP14 Missense_Mutation p.R6K 0.22 tolerated(0.66) unknown(0) TCGA-L5-A8NK-01 14 23450684 23450685 CA - AJUBA Frame_Shift_Del p.V264Dfs*41 0.43 TCGA-L5-A8NK-01 14 35596726 35596726 A G KIAA0391 Missense_Mutation p.Q359R 0.06 deleterious(0.05) possibly_damaging(0.888) TCGA-L5-A8NK-01 14 42077703 42077703 G A LRFN5 5'UTR 0.23 TCGA-L5-A8NK-01 14 42077704 42077704 C A LRFN5 5'UTR 0.22 TCGA-L5-A8NK-01 14 47613337 47613337 C T MDGA2 Missense_Mutation p.V246I 0.27 tolerated(0.37) benign(0.004) TCGA-L5-A8NK-01 14 64939527 64939527 G C AKAP5 3'UTR 0.21 TCGA-L5-A8NK-01 14 67291233 67291233 G C GPHN Missense_Mutation p.L81F 0.20 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NK-01 14 71204982 71204982 C T MAP3K9 Silent p.E608E 0.08 TCGA-L5-A8NK-01 14 73742091 73742091 C G NUMB 3'UTR 0.29 TCGA-L5-A8NK-01 14 75601670 75601670 G A TMED10 Missense_Mutation p.S193L 0.21 deleterious(0.02) benign(0.443) TCGA-L5-A8NK-01 14 76113997 76113997 C A FLVCR2 3'UTR 0.13 TCGA-L5-A8NK-01 15 25328575 25328575 G C SNORD116-18 5'Flank 0.10 TCGA-L5-A8NK-01 15 27018791 27018791 C T GABRB3 5'Flank 0.22 TCGA-L5-A8NK-01 15 28501404 28501404 G A HERC2 Silent p.S859S 0.11 TCGA-L5-A8NK-01 15 42040914 42040914 G C MGA Missense_Mutation p.L1764F 0.41 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NK-01 15 42041585 42041585 G C MGA Missense_Mutation p.G1927A 0.32 deleterious(0.01) benign(0.073) TCGA-L5-A8NK-01 15 42041731 42041736 GACCAG CACCA MGA Frame_Shift_Del p.D1976Hfs*9 0.22 TCGA-L5-A8NK-01 15 42041908 42041908 G C MGA Missense_Mutation p.E2035Q 0.29 deleterious_low_confidence(0.04) benign(0.306) TCGA-L5-A8NK-01 15 42042323 42042323 G T MGA Missense_Mutation p.R2173I 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-L5-A8NK-01 15 42042387 42042387 G A MGA Silent p.K2194K 0.27 TCGA-L5-A8NK-01 15 60748894 60748894 C G NARG2 Missense_Mutation p.E210Q 0.40 tolerated(0.63) probably_damaging(0.92) TCGA-L5-A8NK-01 15 75651724 75651724 G A MAN2C1 Silent p.S668S 0.17 TCGA-L5-A8NK-01 15 75981846 75981846 C T CSPG4 Silent p.L520L 0.40 TCGA-L5-A8NK-01 15 89018446 89018446 G A MRPS11 Silent p.Q129Q 0.35 TCGA-L5-A8NK-01 15 89862174 89862174 A T POLG Silent p.A1087A 0.44 TCGA-L5-A8NK-01 16 21666772 21666772 C G METTL9 3'UTR 0.23 TCGA-L5-A8NK-01 16 2812373 2812373 C T SRRM2 Missense_Mutation p.S615F 0.16 unknown(0) TCGA-L5-A8NK-01 16 2812379 2812379 C G SRRM2 Missense_Mutation p.S617C 0.16 unknown(0) TCGA-L5-A8NK-01 16 2812817 2812817 C G SRRM2 Missense_Mutation p.S763C 0.09 benign(0.184) TCGA-L5-A8NK-01 16 2812877 2812877 C T SRRM2 Missense_Mutation p.S783F 0.09 benign(0.184) TCGA-L5-A8NK-01 16 28996145 28996145 C T LAT 5'Flank 0.19 TCGA-L5-A8NK-01 16 3081445 3081445 C G CCDC64B Intron 0.29 TCGA-L5-A8NK-01 16 31104658 31104658 G A VKORC1 Silent p.I86I 0.10 TCGA-L5-A8NK-01 16 4408369 4408369 C T CORO7 Missense_Mutation p.R819Q 0.31 deleterious(0.01) benign(0.403) TCGA-L5-A8NK-01 16 46943697 46943697 C T GPT2 Silent p.L226L 0.34 TCGA-L5-A8NK-01 16 46964835 46964835 G A GPT2 3'UTR 0.16 TCGA-L5-A8NK-01 16 88722868 88722868 G T MVD Intron 0.55 TCGA-L5-A8NK-01 17 18147900 18147900 C T LLGL1 3'UTR 0.64 TCGA-L5-A8NK-01 17 18150102 18150102 C G FLII Missense_Mutation p.E953Q 0.13 tolerated(0.21) benign(0.009) TCGA-L5-A8NK-01 17 18907093 18907093 G A FAM83G Nonsense_Mutation p.Q88* 0.21 TCGA-L5-A8NK-01 17 2203562 2203562 C T SMG6 Missense_Mutation p.R162Q 0.24 tolerated_low_confidence(0.28) benign(0.003) TCGA-L5-A8NK-01 17 2587958 2587958 G A PAFAH1B1 3'UTR 0.32 TCGA-L5-A8NK-01 17 2597225 2597225 C T CLUH Missense_Mutation p.R1028H 0.09 deleterious(0) probably_damaging(1) TCGA-L5-A8NK-01 17 37680952 37680952 G A CDK12 Missense_Mutation p.E1041K 0.13 probably_damaging(0.91) TCGA-L5-A8NK-01 17 39341434 39341434 C A KRTAP4-1 5'UTR 0.36 TCGA-L5-A8NK-01 17 45447865 45447865 G C EFCAB13 Missense_Mutation p.E290Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NK-01 17 47297620 47297628 CTCCACCAG - ABI3 In_Frame_Del p.P246_A248del 0.18 TCGA-L5-A8NK-01 17 57917764 57917764 C G VMP1 3'UTR 0.15 TCGA-L5-A8NK-01 17 57918642 57918642 C T VMP1 3'Flank 0.23 TCGA-L5-A8NK-01 17 59067470 59067470 C T BCAS3 Missense_Mutation p.R454C 0.10 deleterious(0) probably_damaging(0.944) TCGA-L5-A8NK-01 17 62034633 62034633 G A SCN4A Silent p.F755F 0.18 TCGA-L5-A8NK-01 17 62525459 62525459 C G CEP95 Missense_Mutation p.P454A 0.22 tolerated(0.21) benign(0.439) TCGA-L5-A8NK-01 17 73974917 73974917 C G ACOX1 Intron 0.27 TCGA-L5-A8NK-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.20 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NK-01 17 7578260 7578260 C A TP53 Missense_Mutation p.V197L 0.32 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A8NK-01 17 76415780 76415780 C A PGS1 Intron 0.17 TCGA-L5-A8NK-01 17 77770322 77770322 G C CBX8 Silent p.L29L 0.11 TCGA-L5-A8NK-01 18 12125725 12125725 C G ANKRD62 Silent p.L635L 0.31 TCGA-L5-A8NK-01 18 14542835 14542835 T G POTEC Missense_Mutation p.H104P 0.17 deleterious_low_confidence(0.02) probably_damaging(0.924) TCGA-L5-A8NK-01 18 2891917 2891917 G A EMILIN2 Missense_Mutation p.E598K 0.20 tolerated(0.29) benign(0.006) TCGA-L5-A8NK-01 18 32335947 32335947 G A DTNA Missense_Mutation p.E3K 0.26 deleterious_low_confidence(0) possibly_damaging(0.702) TCGA-L5-A8NK-01 18 44561247 44561247 C T TCEB3B Missense_Mutation p.R130Q 0.34 tolerated(1) benign(0.118) TCGA-L5-A8NK-01 18 60986083 60986083 G A BCL2 5'UTR 0.11 TCGA-L5-A8NK-01 19 10671094 10671094 C G KRI1 Missense_Mutation p.E238Q 0.14 tolerated(0.24) benign(0.04) TCGA-L5-A8NK-01 19 10789847 10789847 C T ILF3 Silent p.T242T 0.14 TCGA-L5-A8NK-01 19 11537020 11537020 C G CCDC151 Missense_Mutation p.E303Q 0.13 tolerated(0.06) possibly_damaging(0.743) TCGA-L5-A8NK-01 19 14513415 14513415 C T CD97 Missense_Mutation p.A397V 0.13 tolerated(0.1) benign(0.032) TCGA-L5-A8NK-01 19 17000097 17000097 G A F2RL3 Missense_Mutation p.G33R 0.16 tolerated(0.19) benign(0.007) TCGA-L5-A8NK-01 19 17715907 17715907 G A UNC13A 3'UTR 0.08 TCGA-L5-A8NK-01 19 30193476 30193476 C G C19orf12 3'UTR 0.41 TCGA-L5-A8NK-01 19 33333110 33333110 C T SLC7A9 Missense_Mutation p.M396I 0.10 deleterious(0.01) possibly_damaging(0.542) TCGA-L5-A8NK-01 19 38102736 38102736 G A ZNF540 Silent p.V185V 0.21 TCGA-L5-A8NK-01 19 51273966 51273966 G C GPR32 Missense_Mutation p.E37Q 0.07 tolerated(0.18) benign(0.06) TCGA-L5-A8NK-01 19 52196977 52196977 C G SPACA6P RNA 0.27 TCGA-L5-A8NK-01 19 52272700 52272700 G T FPR2 Silent p.L263L 0.19 TCGA-L5-A8NK-01 19 54204512 54204512 A C MIR520B RNA 0.09 TCGA-L5-A8NK-01 19 54485522 54485522 G C CACNG8 Missense_Mutation p.E233Q 0.21 tolerated(0.32) probably_damaging(0.982) TCGA-L5-A8NK-01 19 54659418 54659418 G C LENG1 3'UTR 0.28 TCGA-L5-A8NK-01 19 58264886 58264886 C T AC003006.7 Missense_Mutation p.H130Y 0.16 tolerated(0.21) benign(0.012) TCGA-L5-A8NK-01 19 58341865 58341865 C T ZNF587B 5'UTR 0.18 TCGA-L5-A8NK-01 19 5921258 5921258 G C RANBP3 Silent p.L428L 0.13 TCGA-L5-A8NK-01 19 7585086 7585086 C T ZNF358 Missense_Mutation p.R320C 0.28 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NK-01 19 7805640 7805640 C T CD209 3'UTR 0.24 TCGA-L5-A8NK-01 1 110950516 110950516 C T LAMTOR5 5'UTR 0.16 TCGA-L5-A8NK-01 1 111833492 111833494 CTC TCCTG CHIA 5'Flank 0.33 TCGA-L5-A8NK-01 1 114524823 114524823 C G OLFML3 3'UTR 0.18 TCGA-L5-A8NK-01 1 12164492 12164492 C T TNFRSF8 Nonsense_Mutation p.R109* 0.21 TCGA-L5-A8NK-01 1 146627394 146627394 G C PRKAB2 3'UTR 0.25 TCGA-L5-A8NK-01 1 149902816 149902816 G A MTMR11 Silent p.L444L 0.19 TCGA-L5-A8NK-01 1 152128077 152128077 C T RPTN Missense_Mutation p.G500S 0.21 tolerated(0.06) possibly_damaging(0.45) TCGA-L5-A8NK-01 1 152732307 152732307 G A KPRP Silent p.V81V 0.13 TCGA-L5-A8NK-01 1 154091197 154091197 G C NUP210L Missense_Mutation p.L472V 0.27 deleterious(0) possibly_damaging(0.696) TCGA-L5-A8NK-01 1 155698908 155698908 G C DAP3 Missense_Mutation p.E227Q 0.19 deleterious(0) probably_damaging(0.944) TCGA-L5-A8NK-01 1 156509318 156509318 G C IQGAP3 Missense_Mutation p.I968M 0.07 tolerated(0.27) benign(0.004) TCGA-L5-A8NK-01 1 16269652 16269652 G A ZBTB17 Missense_Mutation p.H579Y 0.15 tolerated(0.35) probably_damaging(0.968) TCGA-L5-A8NK-01 1 163042230 163042230 T A RGS4 Silent p.S127S 0.10 TCGA-L5-A8NK-01 1 164789343 164789343 A T PBX1 Silent p.G344G 0.14 TCGA-L5-A8NK-01 1 17314657 17314657 G C ATP13A2 Missense_Mutation p.F945L 0.08 deleterious(0) probably_damaging(0.972) TCGA-L5-A8NK-01 1 174979138 174979138 G A CACYBP Missense_Mutation p.D204N 0.16 deleterious(0) probably_damaging(1) TCGA-L5-A8NK-01 1 180943948 180943948 G C STX6 3'UTR 0.17 TCGA-L5-A8NK-01 1 184792837 184792837 G C FAM129A Missense_Mutation p.L253V 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NK-01 1 196706631 196706631 C T CFH Nonsense_Mutation p.Q875* 0.18 TCGA-L5-A8NK-01 1 196927174 196927174 G A CFHR2 Missense_Mutation p.G195E 0.16 deleterious(0) possibly_damaging(0.5) TCGA-L5-A8NK-01 1 197552366 197552366 G A DENND1B Silent p.F355F 0.14 TCGA-L5-A8NK-01 1 20097816 20097816 C T TMCO4 Silent p.P113P 0.22 TCGA-L5-A8NK-01 1 204010308 204010308 G A LINC00303 RNA 0.25 TCGA-L5-A8NK-01 1 248903064 248903064 G C LYPD8 Missense_Mutation p.L30V 0.20 tolerated(1) benign(0) TCGA-L5-A8NK-01 1 26365766 26365766 T A SLC30A2 Missense_Mutation p.K335M 0.12 tolerated(0.06) benign(0.248) TCGA-L5-A8NK-01 1 35919200 35919200 G C KIAA0319L Nonsense_Mutation p.S624* 0.20 TCGA-L5-A8NK-01 1 46499772 46499772 G C MAST2 Missense_Mutation p.K1234N 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-L5-A8NK-01 20 21686544 21686544 G A PAX1 Missense_Mutation p.G65D 0.24 tolerated_low_confidence(0.25) benign(0) TCGA-L5-A8NK-01 20 41514563 41514563 G A PTPRT Missense_Mutation p.S33F 0.21 deleterious(0) possibly_damaging(0.701) TCGA-L5-A8NK-01 20 43150680 43150680 G A SERINC3 5'UTR 0.23 TCGA-L5-A8NK-01 20 5479726 5479726 G A LINC00654 RNA 0.23 TCGA-L5-A8NK-01 20 61513083 61513083 C T DIDO1 Missense_Mutation p.E1409K 0.16 benign(0.114) TCGA-L5-A8NK-01 21 37741333 37741333 A G MORC3 Missense_Mutation p.N556S 0.20 tolerated(0.69) benign(0.002) TCGA-L5-A8NK-01 21 37834039 37834039 C A CLDN14 5'UTR 0.17 TCGA-L5-A8NK-01 21 38123572 38123572 C T HLCS 3'UTR 0.15 TCGA-L5-A8NK-01 21 43339044 43339044 C G C2CD2 Missense_Mutation p.R173T 0.15 tolerated(0.21) benign(0.091) TCGA-L5-A8NK-01 21 46066408 46066408 C A KRTAP10-11 Missense_Mutation p.S11R 0.05 deleterious(0) unknown(0) TCGA-L5-A8NK-01 22 33733678 33733678 C T LARGE Missense_Mutation p.R414Q 0.29 deleterious(0.01) possibly_damaging(0.787) TCGA-L5-A8NK-01 22 47507497 47507497 C G TBC1D22A Missense_Mutation p.Q475E 0.31 deleterious(0) benign(0.307) TCGA-L5-A8NK-01 22 49147147 49147147 C T FAM19A5 3'Flank 0.11 TCGA-L5-A8NK-01 2 111427127 111427127 C G BUB1 Missense_Mutation p.R157T 0.07 tolerated(0.33) benign(0.025) TCGA-L5-A8NK-01 2 11355639 11355639 C A ROCK2 Missense_Mutation p.D532Y 0.24 tolerated(0.1) possibly_damaging(0.718) TCGA-L5-A8NK-01 2 121746894 121746894 C G GLI2 Missense_Mutation p.S1135C 0.12 deleterious(0.01) possibly_damaging(0.498) TCGA-L5-A8NK-01 2 129026040 129026040 T C HS6ST1 Missense_Mutation p.K311R 0.22 tolerated(0.9) benign(0.04) TCGA-L5-A8NK-01 2 163133265 163133265 C T IFIH1 Missense_Mutation p.E746K 0.29 deleterious(0.01) benign(0.426) TCGA-L5-A8NK-01 2 16769367 16769367 G C FAM49A Silent p.V7V 0.11 TCGA-L5-A8NK-01 2 170032935 170032935 G A LRP2 Silent p.C3519C 0.24 TCGA-L5-A8NK-01 2 170865359 170865359 A G UBR3 Missense_Mutation p.I1426V 0.17 deleterious(0.04) benign(0.222) TCGA-L5-A8NK-01 2 179424251 179424251 C G TTN Missense_Mutation p.E28870Q 0.17 TCGA-L5-A8NK-01 2 179610671 179610671 T C TTN Intron 0.21 TCGA-L5-A8NK-01 2 179647638 179647638 G A TTN Missense_Mutation p.R999C 0.10 TCGA-L5-A8NK-01 2 180016092 180016092 C T SESTD1 Silent p.L132L 0.17 TCGA-L5-A8NK-01 2 18765458 18765458 C T NT5C1B Missense_Mutation p.G323S 0.25 tolerated(0.67) benign(0.023) TCGA-L5-A8NK-01 2 209200537 209200537 C - PIKFYVE Frame_Shift_Del p.I1427Lfs*8 0.23 TCGA-L5-A8NK-01 2 212248141 212248141 C T ERBB4 3'UTR 0.20 TCGA-L5-A8NK-01 2 220164085 220164085 G C PTPRN Silent p.T515T 0.11 TCGA-L5-A8NK-01 2 220430012 220430012 C G OBSL1 Missense_Mutation p.E787Q 0.14 tolerated(0.25) benign(0.068) TCGA-L5-A8NK-01 2 230744732 230744732 C T TRIP12 Missense_Mutation p.G22R 0.18 deleterious_low_confidence(0) possibly_damaging(0.559) TCGA-L5-A8NK-01 2 232262814 232262814 G C B3GNT7 Missense_Mutation p.E128D 0.11 tolerated(0.06) possibly_damaging(0.752) TCGA-L5-A8NK-01 2 26358681 26358681 C T RAB10 3'UTR 0.13 TCGA-L5-A8NK-01 2 28065945 28065945 C G RBKS Missense_Mutation p.R168P 0.20 deleterious(0.01) possibly_damaging(0.785) TCGA-L5-A8NK-01 2 3743330 3743330 G T ALLC Missense_Mutation p.V179L 0.16 deleterious(0) possibly_damaging(0.702) TCGA-L5-A8NK-01 2 37872846 37872846 G A CDC42EP3 3'UTR 0.10 TCGA-L5-A8NK-01 2 61237711 61237711 C T PUS10 Intron 0.19 TCGA-L5-A8NK-01 2 80874927 80874927 G A CTNNA2 Missense_Mutation p.R883Q 0.16 deleterious(0.03) possibly_damaging(0.852) TCGA-L5-A8NK-01 2 96956138 96956138 C T SNRNP200 Missense_Mutation p.E890K 0.28 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NK-01 2 99271934 99271934 G C MGAT4A Missense_Mutation p.Q250E 0.12 deleterious(0) benign(0.11) TCGA-L5-A8NK-01 2 99697803 99697803 C G TSGA10 Missense_Mutation p.K223N 0.22 tolerated(0.11) benign(0.142) TCGA-L5-A8NK-01 3 118865478 118865478 C T C3orf30 Nonsense_Mutation p.R148* 0.17 TCGA-L5-A8NK-01 3 126139001 126139001 G C CCDC37 Silent p.R337R 0.25 TCGA-L5-A8NK-01 3 135864524 135864524 G A PPP2R3A 3'UTR 0.22 TCGA-L5-A8NK-01 3 136574698 136574698 C G SLC35G2 3'UTR 0.22 TCGA-L5-A8NK-01 3 137822572 137822572 G A DZIP1L Missense_Mutation p.P81L 0.25 deleterious(0) possibly_damaging(0.87) TCGA-L5-A8NK-01 3 156763598 156763598 G A LEKR1 3'UTR 0.18 TCGA-L5-A8NK-01 3 178960754 178960754 C G KCNMB3 Missense_Mutation p.E260Q 0.23 tolerated_low_confidence(0.3) benign(0.151) TCGA-L5-A8NK-01 3 184711826 184711826 T A VPS8 Missense_Mutation p.M1214K 0.16 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NK-01 3 196199528 196199528 G A RNF168 Missense_Mutation p.S293L 0.52 tolerated(0.65) benign(0.025) TCGA-L5-A8NK-01 3 3067916 3067916 G C CNTN4 Silent p.L539L 0.28 TCGA-L5-A8NK-01 3 52864530 52864530 C T ITIH4 Intron 0.41 TCGA-L5-A8NK-01 4 10492148 10492148 C T CLNK Silent p.R410R 0.27 TCGA-L5-A8NK-01 4 120528239 120528239 C T PDE5A Silent p.V122V 0.29 TCGA-L5-A8NK-01 4 122599640 122599640 G C ANXA5 Nonsense_Mutation p.S135* 0.25 TCGA-L5-A8NK-01 4 126242132 126242132 C A FAT4 Silent p.L1522L 0.20 TCGA-L5-A8NK-01 4 134072089 134072089 C A PCDH10 Missense_Mutation p.P265Q 0.29 tolerated(0.36) possibly_damaging(0.828) TCGA-L5-A8NK-01 4 155156083 155156083 C T DCHS2 Missense_Mutation p.E2786K 0.50 deleterious(0.01) possibly_damaging(0.685) TCGA-L5-A8NK-01 4 155219049 155219049 G A DCHS2 Silent p.F1684F 0.20 TCGA-L5-A8NK-01 4 155254137 155254137 T A DCHS2 Nonsense_Mutation p.K576* 0.20 TCGA-L5-A8NK-01 4 155410844 155410844 C A DCHS2 Missense_Mutation p.G555V 0.12 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NK-01 4 155411596 155411596 C T DCHS2 Silent p.A304A 0.27 TCGA-L5-A8NK-01 4 17805730 17805730 G A DCAF16 Missense_Mutation p.S12L 0.33 deleterious_low_confidence(0.03) benign(0.012) TCGA-L5-A8NK-01 4 2835719 2835719 T C SH3BP2 3'UTR 0.27 TCGA-L5-A8NK-01 4 6293094 6293094 G A WFS1 Missense_Mutation p.D211N 0.43 tolerated(0.17) possibly_damaging(0.495) TCGA-L5-A8NK-01 4 66189745 66189745 T C EPHA5 3'UTR 0.06 TCGA-L5-A8NK-01 4 71467351 71467351 G A AMBN Missense_Mutation p.D171N 0.13 deleterious(0.02) possibly_damaging(0.597) TCGA-L5-A8NK-01 4 72607471 72607471 T G GC 3'UTR 0.26 TCGA-L5-A8NK-01 4 8207065 8207065 C T SH3TC1 Silent p.P48P 0.18 TCGA-L5-A8NK-01 4 87809349 87809349 C A C4orf36 Nonsense_Mutation p.E49* 0.25 TCGA-L5-A8NK-01 4 95199585 95199585 G C SMARCAD1 Missense_Mutation p.E699Q 0.20 deleterious(0.04) benign(0.113) TCGA-L5-A8NK-01 5 129019948 129019948 G A ADAMTS19 Missense_Mutation p.D928N 0.13 tolerated(0.3) benign(0.005) TCGA-L5-A8NK-01 5 139494603 139494603 G A PURA Silent p.K279K 0.15 TCGA-L5-A8NK-01 5 140214165 140214165 C T PCDHA7 Missense_Mutation p.A66V 0.16 tolerated_low_confidence(1) benign(0.002) TCGA-L5-A8NK-01 5 140347393 140347393 C G PCDHAC2 Missense_Mutation p.H348D 0.09 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NK-01 5 149755735 149755735 G T TCOF1 Missense_Mutation p.G662C 0.23 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NK-01 5 150647048 150647048 G A GM2A 3'UTR 0.23 TCGA-L5-A8NK-01 5 169310792 169310792 C T FAM196B Silent p.V37V 0.17 TCGA-L5-A8NK-01 5 177733909 177733909 G A COL23A1 Missense_Mutation p.R125W 0.13 deleterious(0.02) unknown(0) TCGA-L5-A8NK-01 5 33637836 33637836 C T ADAMTS12 Silent p.G578G 0.10 TCGA-L5-A8NK-01 5 55422898 55422898 G A ANKRD55 Silent p.S216S 0.07 TCGA-L5-A8NK-01 5 66461496 66461496 G A MAST4 Silent p.P2163P 0.22 TCGA-L5-A8NK-01 5 79030935 79030935 C T CMYA5 Missense_Mutation p.A2116V 0.09 benign(0.004) TCGA-L5-A8NK-01 6 110501659 110501659 G T CDC40 Silent p.A4A 0.41 TCGA-L5-A8NK-01 6 110501702 110501702 G C CDC40 Missense_Mutation p.E19Q 0.41 tolerated(0.1) unknown(0) TCGA-L5-A8NK-01 6 26043872 26043872 G T HIST1H2BB Missense_Mutation p.S5Y 0.20 deleterious_low_confidence(0) benign(0.039) TCGA-L5-A8NK-01 6 26092860 26092860 C T HFE Intron 0.29 TCGA-L5-A8NK-01 6 26225496 26225496 G - HIST1H3E Frame_Shift_Del p.K38Nfs*25 0.12 TCGA-L5-A8NK-01 6 26423187 26423187 G A BTN2A3P RNA 0.15 TCGA-L5-A8NK-01 6 26545537 26545537 C T HMGN4 Missense_Mutation p.P35S 0.13 deleterious(0.04) possibly_damaging(0.465) TCGA-L5-A8NK-01 6 27834849 27834849 C A HIST1H1B Missense_Mutation p.K153N 0.40 tolerated(0.13) unknown(0) TCGA-L5-A8NK-01 6 33272235 33272235 G A TAPBP Missense_Mutation p.S350L 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NK-01 6 36291264 36291264 G A C6orf222 Missense_Mutation p.P426L 0.13 tolerated(0.2) probably_damaging(0.958) TCGA-L5-A8NK-01 6 43098368 43098368 G A PTK7 Missense_Mutation p.E269K 0.15 tolerated(0.28) probably_damaging(0.969) TCGA-L5-A8NK-01 6 64282504 64282504 G A PTP4A1 5'UTR 0.31 TCGA-L5-A8NK-01 6 76751789 76751789 C T IMPG1 Missense_Mutation p.R41K 0.17 tolerated(0.5) benign(0.037) TCGA-L5-A8NK-01 6 7880445 7880445 G C BMP6 Missense_Mutation p.E471Q 0.27 deleterious(0.03) benign(0.248) TCGA-L5-A8NK-01 6 96662651 96662651 G T FUT9 3'UTR 0.19 TCGA-L5-A8NK-01 7 100276334 100276334 C T GNB2 Silent p.H311H 0.43 TCGA-L5-A8NK-01 7 100680134 100680134 A C MUC17 Missense_Mutation p.T1813P 0.14 benign(0.004) TCGA-L5-A8NK-01 7 102065491 102065491 G C PRKRIP1 Missense_Mutation p.S163T 0.38 tolerated(0.13) benign(0.418) TCGA-L5-A8NK-01 7 102065493 102065493 A C PRKRIP1 Missense_Mutation p.S164R 0.40 tolerated(0.05) possibly_damaging(0.637) TCGA-L5-A8NK-01 7 141754576 141754576 G T MGAM Missense_Mutation p.R1061L 0.23 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NK-01 7 151873959 151873959 G C KMT2C Nonsense_Mutation p.S2860* 0.38 TCGA-L5-A8NK-01 7 21553774 21553774 G T SP4 3'UTR 0.22 TCGA-L5-A8NK-01 7 27192510 27192510 G A HOXA7 3'Flank 0.15 TCGA-L5-A8NK-01 7 4800867 4800867 C T FOXK1 Silent p.T623T 0.14 TCGA-L5-A8NK-01 7 56183800 56183800 G A NUPR1L Missense_Mutation p.R70C 0.12 deleterious(0) possibly_damaging(0.898) TCGA-L5-A8NK-01 7 62809611 62809611 G A AC006455.1 5'UTR 0.04 TCGA-L5-A8NK-01 7 72849459 72849459 G C FZD9 Silent p.L374L 0.32 TCGA-L5-A8NK-01 8 100147953 100147953 C T VPS13B Missense_Mutation p.H519Y 0.37 deleterious(0.04) benign(0.403) TCGA-L5-A8NK-01 8 113678558 113678558 C T CSMD3 Missense_Mutation p.E922K 0.14 tolerated(0.18) probably_damaging(0.999) TCGA-L5-A8NK-01 8 134144053 134144053 C T TG Intron 0.37 TCGA-L5-A8NK-01 8 135614789 135614789 G A ZFAT Silent p.L391L 0.31 TCGA-L5-A8NK-01 8 61778006 61778006 G T CHD7 Silent p.P2836P 0.33 TCGA-L5-A8NK-01 8 90801591 90801591 C G RIPK2 Missense_Mutation p.P389R 0.26 deleterious(0.04) benign(0.003) TCGA-L5-A8NK-01 9 111936619 111936619 C G EPB41L4B 3'UTR 0.46 TCGA-L5-A8NK-01 9 35094020 35094020 C T PIGO Missense_Mutation p.M219I 0.41 tolerated(0.21) benign(0.141) TCGA-L5-A8NK-01 9 35700035 35700035 C T TLN1 Missense_Mutation p.R2235Q 0.52 deleterious(0.01) probably_damaging(0.957) TCGA-L5-A8NK-01 X 100079173 100079173 G A CSTF2 Missense_Mutation p.G210D 0.38 tolerated(0.08) benign(0.008) TCGA-L5-A8NK-01 X 11156578 11156578 A T ARHGAP6 3'UTR 0.23 TCGA-L5-A8NK-01 X 112021158 112021158 C A AMOT 3'UTR 0.19 TCGA-L5-A8NK-01 X 119392534 119392534 G C TMEM255A 3'UTR 0.33 TCGA-L5-A8NK-01 X 150869317 150869317 C T PRRG3 Missense_Mutation p.R170W 0.15 tolerated(0.18) possibly_damaging(0.732) TCGA-L5-A8NK-01 X 16761850 16761850 T A SYAP1 Silent p.P154P 0.11 TCGA-L5-A8NK-01 X 18936848 18936848 C T PHKA2 Silent p.T696T 0.13 TCGA-L5-A8NK-01 X 19553831 19553831 A T SH3KBP1 3'UTR 0.14 TCGA-L5-A8NK-01 X 21670710 21670710 C G CNKSR2 3'UTR 0.23 TCGA-L5-A8NK-01 X 21902186 21902186 G C MBTPS2 3'UTR 0.33 TCGA-L5-A8NK-01 X 41091836 41091836 T G USP9X 3'UTR 0.10 TCGA-L5-A8NK-01 X 46713020 46713020 A G RP2 Missense_Mutation p.N71S 0.11 tolerated(0.34) benign(0.001) TCGA-L5-A8NK-01 X 48678643 48678643 G A HDAC6 Missense_Mutation p.R773H 0.13 tolerated(0.16) benign(0.243) TCGA-L5-A8NK-01 X 83599383 83599383 G T HDX Missense_Mutation p.S512Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NK-01 X 91874250 91874250 A G PCDH11X 3'UTR 0.30 TCGA-L5-A8NL-01 10 25861813 25861813 G A GPR158 Missense_Mutation p.V584I 0.19 tolerated(0.18) benign(0.031) TCGA-L5-A8NL-01 10 37430816 37430816 T A ANKRD30A Missense_Mutation p.L275M 0.07 deleterious(0.05) possibly_damaging(0.86) TCGA-L5-A8NL-01 10 72358125 72358125 C T PRF1 Missense_Mutation p.S451N 0.15 tolerated(0.67) benign(0.012) TCGA-L5-A8NL-01 10 78669724 78669724 C T KCNMA1 Silent p.A1032A 0.07 TCGA-L5-A8NL-01 10 98808783 98808783 C T SLIT1 Missense_Mutation p.R465H 0.14 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NL-01 11 108143528 108143528 T G ATM Missense_Mutation p.L1078R 0.13 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NL-01 11 1280192 1280192 C A MUC5B Silent p.G5538G 0.35 TCGA-L5-A8NL-01 11 16877392 16877392 C T PLEKHA7 Silent p.T125T 0.22 TCGA-L5-A8NL-01 11 20628637 20628637 C T SLC6A5 Missense_Mutation p.A255V 0.08 deleterious(0.05) benign(0.417) TCGA-L5-A8NL-01 11 2906386 2906386 C T CDKN1C Missense_Mutation p.A112T 0.44 deleterious(0.03) benign(0.303) TCGA-L5-A8NL-01 11 32456254 32456254 C A WT1 Missense_Mutation p.R213L 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.595) TCGA-L5-A8NL-01 11 4608198 4608198 T G OR52I2 Silent p.S52S 0.20 TCGA-L5-A8NL-01 11 46515709 46515709 C A AMBRA1 Silent p.R705R 0.11 TCGA-L5-A8NL-01 11 50003816 50003816 A G OR4C12 Silent p.S74S 0.23 TCGA-L5-A8NL-01 11 5411357 5411357 A C OR51M1 Missense_Mutation p.Q243H 0.12 tolerated(0.38) benign(0.001) TCGA-L5-A8NL-01 11 55681987 55681987 T G OR5W2 Missense_Mutation p.K24N 0.15 deleterious(0.02) benign(0.061) TCGA-L5-A8NL-01 11 55927568 55927568 C A OR8K5 Missense_Mutation p.V76F 0.16 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-L5-A8NL-01 11 56058343 56058343 A C OR8H1 Missense_Mutation p.L66V 0.17 deleterious(0) possibly_damaging(0.899) TCGA-L5-A8NL-01 11 67770600 67770600 C A UNC93B1 Missense_Mutation p.R95L 0.16 deleterious(0) probably_damaging(0.987) TCGA-L5-A8NL-01 11 76506652 76506652 G A TSKU Splice_Site 0.07 TCGA-L5-A8NL-01 12 104335268 104335268 A G HSP90B1 Silent p.T391T 0.21 TCGA-L5-A8NL-01 12 105558045 105558045 C T KIAA1033 Missense_Mutation p.T1105I 0.24 deleterious(0) probably_damaging(0.939) TCGA-L5-A8NL-01 12 107365723 107365723 C A C12orf23 3'UTR 0.22 TCGA-L5-A8NL-01 12 111885533 111885533 T A SH2B3 Missense_Mutation p.M437K 0.30 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NL-01 12 113723729 113723729 C T TPCN1 Silent p.L569L 0.20 TCGA-L5-A8NL-01 12 120995414 120995414 G A RNF10 Missense_Mutation p.R299K 0.22 tolerated(0.06) probably_damaging(0.961) TCGA-L5-A8NL-01 12 24736553 24736553 T C LINC00477 RNA 0.16 TCGA-L5-A8NL-01 12 3104001 3104001 C T TEAD4 Silent p.T23T 0.18 TCGA-L5-A8NL-01 12 41585273 41585273 A C PDZRN4 Missense_Mutation p.K221T 0.28 tolerated_low_confidence(0.18) benign(0.037) TCGA-L5-A8NL-01 12 44783276 44783276 A C TMEM117 3'UTR 0.23 TCGA-L5-A8NL-01 12 54378978 54378978 G C HOXC10 5'UTR 0.25 TCGA-L5-A8NL-01 12 56428846 56428846 G A IKZF4 Missense_Mutation p.E497K 0.21 tolerated(0.07) possibly_damaging(0.468) TCGA-L5-A8NL-01 12 70990025 70990025 G A PTPRB Silent p.S354S 0.28 TCGA-L5-A8NL-01 12 85517961 85517961 A G LRRIQ1 Missense_Mutation p.K1224R 0.26 tolerated(0.11) benign(0.022) TCGA-L5-A8NL-01 12 99640518 99640518 C A ANKS1B Silent p.G627G 0.17 TCGA-L5-A8NL-01 13 21417073 21417073 C T XPO4 Missense_Mutation p.A230T 0.23 tolerated(0.18) benign(0.356) TCGA-L5-A8NL-01 13 35730247 35730248 - A NBEA Frame_Shift_Ins p.N854Kfs*18 0.09 TCGA-L5-A8NL-01 13 38151912 38151912 T C POSTN Silent p.K662K 0.13 TCGA-L5-A8NL-01 14 72090894 72090894 C T SIPA1L1 Missense_Mutation p.R587W 0.13 deleterious(0) possibly_damaging(0.727) TCGA-L5-A8NL-01 15 74429079 74429079 C - ISLR2 3'UTR 0.12 TCGA-L5-A8NL-01 15 84706593 84706593 A G ADAMTSL3 3'UTR 0.30 TCGA-L5-A8NL-01 15 87089267 87089267 A G AGBL1 Missense_Mutation p.K861R 0.24 deleterious(0.01) benign(0.151) TCGA-L5-A8NL-01 16 11009480 11009480 C T CIITA Missense_Mutation p.T981M 0.26 tolerated(0.1) benign(0.011) TCGA-L5-A8NL-01 16 1250520 1250520 C T CACNA1H Silent p.N356N 0.15 TCGA-L5-A8NL-01 16 2653046 2653046 T G PDPK1 3'UTR 0.26 TCGA-L5-A8NL-01 16 319817 319817 G A ITFG3 3'UTR 0.38 TCGA-L5-A8NL-01 16 32896410 32896410 G C RP11-989E6.3 5'Flank 0.38 TCGA-L5-A8NL-01 16 74920239 74920239 C T WDR59 Silent p.E825E 0.18 TCGA-L5-A8NL-01 16 7761148 7761148 T C RBFOX1 3'UTR 0.18 TCGA-L5-A8NL-01 16 78142384 78142384 G A WWOX Missense_Mutation p.D58N 0.09 deleterious(0.05) benign(0.016) TCGA-L5-A8NL-01 16 8989526 8989527 - G USP7 Frame_Shift_Ins p.A965Cfs*23 0.13 TCGA-L5-A8NL-01 17 16829387 16829387 A G TBC1D27 RNA 0.29 TCGA-L5-A8NL-01 17 38325882 38325882 T G CASC3 3'UTR 0.08 TCGA-L5-A8NL-01 17 68128730 68128730 G T KCNJ16 Missense_Mutation p.A168S 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A8NL-01 17 68173874 68173874 T C KCNJ2 3'UTR 0.09 TCGA-L5-A8NL-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NL-01 17 8215791 8215791 C G ARHGEF15 Nonsense_Mutation p.S145* 0.20 TCGA-L5-A8NL-01 17 8791758 8791758 G A PIK3R5 Missense_Mutation p.T449M 0.19 tolerated(0.14) benign(0.243) TCGA-L5-A8NL-01 18 2688427 2688427 C T SMCHD1 Missense_Mutation p.P225L 0.10 deleterious(0) possibly_damaging(0.805) TCGA-L5-A8NL-01 18 44109156 44109156 T C LOXHD1 Missense_Mutation p.K394R 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NL-01 19 13041425 13041425 C T FARSA Splice_Site p.X95_splice 0.27 TCGA-L5-A8NL-01 19 14875291 14875291 C A EMR2 Missense_Mutation p.K346N 0.10 deleterious(0.03) benign(0.175) TCGA-L5-A8NL-01 19 15905096 15905096 C T OR10H5 Missense_Mutation p.R80C 0.13 deleterious(0.02) benign(0.033) TCGA-L5-A8NL-01 19 18368166 18368166 C T KIAA1683 Missense_Mutation p.A1310T 0.28 tolerated(0.07) benign(0.049) TCGA-L5-A8NL-01 19 31048169 31048169 G T ZNF536 3'UTR 0.21 TCGA-L5-A8NL-01 19 41289869 41289869 C T RAB4B Missense_Mutation p.R107C 0.26 deleterious(0) probably_damaging(0.969) TCGA-L5-A8NL-01 19 9299420 9299420 G T OR7D2 3'UTR 0.43 TCGA-L5-A8NL-01 1 109836849 109836849 T C MYBPHL 3'UTR 0.05 TCGA-L5-A8NL-01 1 149858858 149858858 A T HIST2H2AC Missense_Mutation p.I112F 0.20 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-L5-A8NL-01 1 151338125 151338125 G A SELENBP1 Missense_Mutation p.R320C 0.24 deleterious(0.02) probably_damaging(0.988) TCGA-L5-A8NL-01 1 154307045 154307045 T G ATP8B2 Missense_Mutation p.L305R 0.19 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NL-01 1 171753485 171753485 C G METTL13 Silent p.A253A 0.25 TCGA-L5-A8NL-01 1 177250184 177250184 C A BRINP2 Nonsense_Mutation p.C624* 0.33 TCGA-L5-A8NL-01 1 178269224 178269224 A G RASAL2 Missense_Mutation p.E143G 0.07 deleterious(0.04) possibly_damaging(0.547) TCGA-L5-A8NL-01 1 180914462 180914462 G A KIAA1614 Missense_Mutation p.R1104H 0.24 tolerated(0.06) possibly_damaging(0.843) TCGA-L5-A8NL-01 1 181770166 181770166 C T CACNA1E 3'Flank 0.18 TCGA-L5-A8NL-01 1 183387334 183387334 C T NMNAT2 Silent p.G23G 0.14 TCGA-L5-A8NL-01 1 26386784 26386784 C T TRIM63 Silent p.Q190Q 0.21 TCGA-L5-A8NL-01 1 27087417 27087417 C - ARID1A Frame_Shift_Del p.S664* 0.25 TCGA-L5-A8NL-01 1 36396916 36396916 C T AGO3 5'UTR 0.48 TCGA-L5-A8NL-01 1 47110925 47110925 G C ATPAF1 Missense_Mutation p.L221V 0.20 tolerated(0.1) possibly_damaging(0.54) TCGA-L5-A8NL-01 1 55070051 55070051 G A ACOT11 Silent p.L395L 0.24 TCGA-L5-A8NL-01 1 55523165 55523165 A G PCSK9 Silent p.S386S 0.06 TCGA-L5-A8NL-01 1 6313985 6313985 G A GPR153 Silent p.I193I 0.13 TCGA-L5-A8NL-01 1 70226051 70226051 C T LRRC7 Missense_Mutation p.A55V 0.10 deleterious(0.01) probably_damaging(0.993) TCGA-L5-A8NL-01 1 92846361 92846361 A T RPAP2 Missense_Mutation p.E590V 0.17 deleterious(0) possibly_damaging(0.845) TCGA-L5-A8NL-01 20 1896101 1896101 G A SIRPA Missense_Mutation p.A146T 0.17 deleterious(0.02) probably_damaging(0.925) TCGA-L5-A8NL-01 20 30432416 30432416 G A FOXS1 Silent p.S310S 0.31 TCGA-L5-A8NL-01 20 34778674 34778674 C T EPB41L1 Missense_Mutation p.R419C 0.24 deleterious(0) probably_damaging(1) TCGA-L5-A8NL-01 20 42355079 42355079 C A GTSF1L Nonsense_Mutation p.E86* 0.29 TCGA-L5-A8NL-01 22 16279279 16279279 A C POTEH Missense_Mutation p.L315R 0.06 deleterious(0) probably_damaging(1) TCGA-L5-A8NL-01 22 39477202 39477202 C T APOBEC3G Missense_Mutation p.R146C 0.19 deleterious(0.04) possibly_damaging(0.849) TCGA-L5-A8NL-01 2 11758761 11758761 C T GREB1 Missense_Mutation p.R1254C 0.15 deleterious(0.01) possibly_damaging(0.821) TCGA-L5-A8NL-01 2 119600674 119600674 A T EN1 Missense_Mutation p.L340H 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NL-01 2 141598614 141598614 A C LRP1B Missense_Mutation p.L1663V 0.23 benign(0.364) TCGA-L5-A8NL-01 2 17697366 17697366 T C RAD51AP2 Missense_Mutation p.K773E 0.18 tolerated(0.14) benign(0.077) TCGA-L5-A8NL-01 2 179471802 179471802 A T TTN Missense_Mutation p.F17843I 0.22 TCGA-L5-A8NL-01 2 181927973 181927973 G A UBE2E3 3'UTR 0.19 TCGA-L5-A8NL-01 2 201399805 201399805 A C SGOL2 Silent p.R74R 0.22 TCGA-L5-A8NL-01 2 210557839 210557839 T C MAP2 Silent p.S315S 0.24 TCGA-L5-A8NL-01 2 233743989 233743989 G A NGEF 3'UTR 0.33 TCGA-L5-A8NL-01 2 48737157 48737157 C T PPP1R21 Nonsense_Mutation p.R697* 0.16 TCGA-L5-A8NL-01 3 147104140 147104140 G T ZIC4 3'UTR 0.50 TCGA-L5-A8NL-01 3 173999756 173999756 A C NLGN1 3'UTR 0.08 TCGA-L5-A8NL-01 3 183855472 183855472 C T EIF2B5 Nonsense_Mutation p.R129* 0.10 TCGA-L5-A8NL-01 3 38103733 38103733 C T DLEC1 Silent p.N249N 0.12 TCGA-L5-A8NL-01 3 38651309 38651309 A C SCN5A Missense_Mutation p.F284V 0.11 tolerated(0.48) probably_damaging(0.917) TCGA-L5-A8NL-01 3 51456251 51456251 G A VPRBP Missense_Mutation p.R677W 0.31 deleterious(0) probably_damaging(0.963) TCGA-L5-A8NL-01 3 56044601 56044601 C T ERC2 Missense_Mutation p.R599H 0.18 tolerated(0.12) probably_damaging(0.971) TCGA-L5-A8NL-01 4 107845203 107845203 G A DKK2 Missense_Mutation p.R230C 0.30 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NL-01 4 114823083 114823083 T G ARSJ 3'UTR 0.18 TCGA-L5-A8NL-01 4 154257285 154257285 T C TRIM2 3'UTR 0.12 TCGA-L5-A8NL-01 4 174448346 174448346 G A HAND2 3'UTR 0.33 TCGA-L5-A8NL-01 4 88732640 88732640 G A IBSP Missense_Mutation p.G178S 0.24 deleterious(0.04) possibly_damaging(0.531) TCGA-L5-A8NL-01 5 107521860 107521860 A C FBXL17 Missense_Mutation p.L568R 0.18 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NL-01 5 132039180 132039180 G A KIF3A Missense_Mutation p.R454W 0.24 deleterious(0) possibly_damaging(0.857) TCGA-L5-A8NL-01 5 137522914 137522914 C T KIF20A Missense_Mutation p.R829C 0.30 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NL-01 5 140203227 140203227 G A PCDHA5 Missense_Mutation p.V623M 0.13 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-L5-A8NL-01 5 178634684 178634684 G A ADAMTS2 Missense_Mutation p.R241C 0.28 deleterious(0.04) possibly_damaging(0.462) TCGA-L5-A8NL-01 5 21760691 21760691 T G CDH12 Missense_Mutation p.N537H 0.12 tolerated(0.17) probably_damaging(0.999) TCGA-L5-A8NL-01 5 37835890 37835890 G A GDNF 5'UTR 0.30 TCGA-L5-A8NL-01 5 5232548 5232548 C T ADAMTS16 Missense_Mutation p.S590L 0.18 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NL-01 5 9066582 9066582 G T SEMA5A Silent p.I750I 0.23 TCGA-L5-A8NL-01 6 152473212 152473212 C T SYNE1 Missense_Mutation p.R8065H 0.30 possibly_damaging(0.772) TCGA-L5-A8NL-01 6 163988562 163988562 T G QKI Intron 0.33 TCGA-L5-A8NL-01 6 29527619 29527619 C T UBD 5'UTR 0.20 TCGA-L5-A8NL-01 6 29574700 29574700 C T GABBR1 Missense_Mutation p.V731M 0.28 deleterious(0.04) possibly_damaging(0.672) TCGA-L5-A8NL-01 6 31379008 31379008 C T MICA Missense_Mutation p.A162V 0.15 deleterious(0.05) possibly_damaging(0.868) TCGA-L5-A8NL-01 6 32083406 32083406 C G ATF6B 3'UTR 0.06 TCGA-L5-A8NL-01 6 43253416 43253416 C T TTBK1 3'UTR 0.21 TCGA-L5-A8NL-01 6 73332285 73332285 G A KCNQ5 Missense_Mutation p.R123H 0.15 deleterious(0.01) benign(0.109) TCGA-L5-A8NL-01 6 91261851 91261851 G C MAP3K7 Missense_Mutation p.L262V 0.10 deleterious(0) probably_damaging(0.941) TCGA-L5-A8NL-01 7 101740766 101740766 G A CUX1 Missense_Mutation p.E142K 0.19 tolerated(0.17) unknown(0) TCGA-L5-A8NL-01 7 119914757 119914757 C T KCND2 Missense_Mutation p.S24L 0.19 tolerated(0.18) benign(0.036) TCGA-L5-A8NL-01 7 120390293 120390293 T G KCND2 3'UTR 0.17 TCGA-L5-A8NL-01 7 133749840 133749840 C A EXOC4 3'UTR 0.11 TCGA-L5-A8NL-01 7 6487513 6487513 G C DAGLB 5'UTR 0.28 TCGA-L5-A8NL-01 7 70885995 70885995 A T WBSCR17 Missense_Mutation p.E289V 0.15 tolerated(0.28) probably_damaging(0.997) TCGA-L5-A8NL-01 7 79848643 79848643 A C GNAI1 3'UTR 0.11 TCGA-L5-A8NL-01 7 86541502 86541502 C A KIAA1324L Missense_Mutation p.L685F 0.20 tolerated(0.21) benign(0.333) TCGA-L5-A8NL-01 7 86974517 86974517 T C CROT 5'Flank 0.35 TCGA-L5-A8NL-01 7 94881072 94881072 A C PPP1R9A Splice_Site p.X799_splice 0.25 TCGA-L5-A8NL-01 8 10480591 10480591 G A RP1L1 Nonsense_Mutation p.R41* 0.15 TCGA-L5-A8NL-01 8 135545194 135545194 G A ZFAT Missense_Mutation p.H1000Y 0.25 deleterious(0.01) possibly_damaging(0.768) TCGA-L5-A8NL-01 8 23167424 23167424 G A LOXL2 Missense_Mutation p.T546I 0.16 deleterious(0.02) possibly_damaging(0.735) TCGA-L5-A8NL-01 8 42692584 42692584 T G THAP1 3'UTR 0.24 TCGA-L5-A8NL-01 8 49647756 49647756 G A EFCAB1 5'UTR 0.27 TCGA-L5-A8NL-01 8 89051952 89051952 A C MMP16 3'UTR 0.33 TCGA-L5-A8NL-01 9 121929790 121929790 G A BRINP1 Missense_Mutation p.R620C 0.22 deleterious(0) probably_damaging(0.973) TCGA-L5-A8NL-01 9 21971119 21971119 C T CDKN2A Missense_Mutation p.R80Q 0.14 tolerated(0.12) possibly_damaging(0.665) TCGA-L5-A8NL-01 9 35835363 35835363 C A TMEM8B Intron 0.31 TCGA-L5-A8NL-01 X 11161918 11161918 G A ARHGAP6 Intron 0.11 TCGA-L5-A8NL-01 X 123631044 123631044 C T TENM1 Missense_Mutation p.G1173S 0.43 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NL-01 X 153906516 153906516 T G GAB3 Missense_Mutation p.K568T 0.50 deleterious(0) probably_damaging(0.984) TCGA-L5-A8NL-01 X 30237706 30237706 C A MAGEB2 3'UTR 0.40 TCGA-L5-A8NL-01 X 41207101 41207101 T G DDX3X 3'UTR 0.32 TCGA-L5-A8NL-01 X 48676794 48676794 G A HDAC6 Missense_Mutation p.R721H 0.33 tolerated(0.59) possibly_damaging(0.449) TCGA-L5-A8NL-01 X 92926986 92926986 A G NAP1L3 Missense_Mutation p.F440L 0.33 deleterious(0) possibly_damaging(0.787) TCGA-L5-A8NM-01 10 100019168 100019168 C A LOXL4 Missense_Mutation p.K227N 0.13 deleterious(0.05) possibly_damaging(0.719) TCGA-L5-A8NM-01 10 101117391 101117391 C A CNNM1 Missense_Mutation p.L566M 0.19 deleterious(0.02) probably_damaging(0.983) TCGA-L5-A8NM-01 10 101458440 101458440 G A ENTPD7 Missense_Mutation p.S387N 0.24 tolerated(0.19) benign(0.027) TCGA-L5-A8NM-01 10 101464581 101464581 G A ENTPD7 3'UTR 0.34 TCGA-L5-A8NM-01 10 102256019 102256019 G A SEC31B Missense_Mutation p.A769V 0.12 tolerated(0.11) benign(0.064) TCGA-L5-A8NM-01 10 103585833 103585833 G - KCNIP2 3'Flank 0.09 TCGA-L5-A8NM-01 10 103826900 103826900 C - HPS6 Frame_Shift_Del p.N559Mfs*54 0.21 TCGA-L5-A8NM-01 10 104590640 104590640 C T CYP17A1 Missense_Mutation p.R449H 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 10 105063383 105063383 A C PCGF6 3'UTR 0.10 TCGA-L5-A8NM-01 10 105200521 105200521 G A PDCD11 Missense_Mutation p.G1491S 0.23 tolerated(0.75) benign(0.004) TCGA-L5-A8NM-01 10 105209411 105209411 G A CALHM2 Silent p.A96A 0.09 TCGA-L5-A8NM-01 10 105215241 105215241 G A CALHM1 Silent p.S273S 0.24 TCGA-L5-A8NM-01 10 105218338 105218338 C T CALHM1 Silent p.L57L 0.12 TCGA-L5-A8NM-01 10 105362131 105362131 G - SH3PXD2A Frame_Shift_Del p.I921Sfs*18 0.33 TCGA-L5-A8NM-01 10 1070564 1070564 C T IDI2 Missense_Mutation p.D34N 0.13 tolerated(0.17) benign(0.316) TCGA-L5-A8NM-01 10 108923780 108923780 C T SORCS1 Missense_Mutation p.G169R 0.32 deleterious(0) possibly_damaging(0.899) TCGA-L5-A8NM-01 10 111884031 111884031 C T ADD3 Missense_Mutation p.T467M 0.14 tolerated(0.24) benign(0.065) TCGA-L5-A8NM-01 10 111893350 111893350 A - ADD3 Frame_Shift_Del p.K701Rfs*8 0.58 TCGA-L5-A8NM-01 10 112837856 112837856 G - ADRA2A Frame_Shift_Del p.G36Afs*12 0.26 TCGA-L5-A8NM-01 10 114578213 114578213 T - VTI1A 3'UTR 0.38 TCGA-L5-A8NM-01 10 11503234 11503234 T - USP6NL 3'UTR 0.32 TCGA-L5-A8NM-01 10 115609832 115609832 A - DCLRE1A Frame_Shift_Del p.F344Lfs*9 0.29 TCGA-L5-A8NM-01 10 115922385 115922385 A - C10orf118 Intron 0.12 TCGA-L5-A8NM-01 10 116013454 116013454 A G VWA2 Missense_Mutation p.T33A 0.22 deleterious(0.02) possibly_damaging(0.769) TCGA-L5-A8NM-01 10 117486834 117486837 AACA - ATRNL1 Frame_Shift_Del p.T1293Sfs*7 0.31 TCGA-L5-A8NM-01 10 118896029 118896029 C T VAX1 Missense_Mutation p.R128H 0.37 deleterious(0.01) unknown(0) TCGA-L5-A8NM-01 10 119308258 119308258 T C EMX2 3'UTR 0.33 TCGA-L5-A8NM-01 10 119768615 119768615 T C RAB11FIP2 Missense_Mutation p.E478G 0.09 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 10 121556338 121556339 - C INPP5F Frame_Shift_Ins p.Q264Sfs*8 0.36 TCGA-L5-A8NM-01 10 121590260 121590260 A - MCMBP 3'UTR 0.22 TCGA-L5-A8NM-01 10 123279622 123279622 G A FGFR2 Silent p.V270V 0.14 TCGA-L5-A8NM-01 10 124812588 124812590 AAC - ACADSB In_Frame_Del p.T382del 0.09 TCGA-L5-A8NM-01 10 125804220 125804220 C T CHST15 Silent p.P254P 0.19 TCGA-L5-A8NM-01 10 126370628 126370628 C T FAM53B Missense_Mutation p.V152I 0.12 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 10 128193531 128193531 G A C10orf90 Missense_Mutation p.R80C 0.16 tolerated(0.07) benign(0.002) TCGA-L5-A8NM-01 10 128934879 128934879 A - FAM196A 3'UTR 0.20 TCGA-L5-A8NM-01 10 129242496 129242496 C T DOCK1 Missense_Mutation p.P1768L 0.12 tolerated(0.23) possibly_damaging(0.908) TCGA-L5-A8NM-01 10 133787443 133787443 G T BNIP3 Silent p.S17S 0.42 TCGA-L5-A8NM-01 10 134013961 134013961 C - DPYSL4 Frame_Shift_Del p.P306Lfs*23 0.18 TCGA-L5-A8NM-01 10 134018502 134018502 C - DPYSL4 3'UTR 0.22 TCGA-L5-A8NM-01 10 134912169 134912169 C T GPR123 Missense_Mutation p.R53W 0.37 tolerated(1) benign(0.002) TCGA-L5-A8NM-01 10 135165862 135165862 G T PRAP1 Missense_Mutation p.R125M 0.22 deleterious(0.04) possibly_damaging(0.634) TCGA-L5-A8NM-01 10 135278386 135278386 C T SPRN Intron 0.26 TCGA-L5-A8NM-01 10 135352525 135352525 G T CYP2E1 3'UTR 0.33 TCGA-L5-A8NM-01 10 135379060 135379060 C T SYCE1 5'UTR 0.23 TCGA-L5-A8NM-01 10 16563599 16563599 C T C1QL3 5'UTR 0.21 TCGA-L5-A8NM-01 10 16563832 16563832 C T C1QL3 5'UTR 0.25 TCGA-L5-A8NM-01 10 16878296 16878296 A G CUBN Missense_Mutation p.V3373A 0.19 deleterious(0.02) benign(0.168) TCGA-L5-A8NM-01 10 20569079 20569079 A - PLXDC2 3'UTR 0.32 TCGA-L5-A8NM-01 10 23481496 23481496 C A PTF1A Missense_Mutation p.L13I 0.19 deleterious_low_confidence(0) possibly_damaging(0.581) TCGA-L5-A8NM-01 10 24889717 24889717 T A ARHGAP21 Missense_Mutation p.D997V 0.21 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 10 25464743 25464743 G A GPR158 Missense_Mutation p.A132T 0.16 tolerated(0.12) possibly_damaging(0.844) TCGA-L5-A8NM-01 10 26455081 26455081 G A MYO3A Missense_Mutation p.D1029N 0.34 deleterious(0.02) benign(0.052) TCGA-L5-A8NM-01 10 32096255 32096255 A - ARHGAP12 3'UTR 0.20 TCGA-L5-A8NM-01 10 32636112 32636112 T C EPC1 5'UTR 0.24 TCGA-L5-A8NM-01 10 35415940 35415940 G A CREM 5'Flank 0.29 TCGA-L5-A8NM-01 10 43883374 43883375 - T HNRNPF 5'UTR 0.18 TCGA-L5-A8NM-01 10 44111987 44111987 G A ZNF485 Missense_Mutation p.A166T 0.12 tolerated(0.18) benign(0.339) TCGA-L5-A8NM-01 10 45498719 45498719 T C ZNF22 Intron 0.50 TCGA-L5-A8NM-01 10 46121407 46121409 CTC - ZFAND4 In_Frame_Del p.G621del 0.21 TCGA-L5-A8NM-01 10 46143826 46143826 C T ZFAND4 Missense_Mutation p.G162D 0.24 deleterious(0.02) probably_damaging(0.963) TCGA-L5-A8NM-01 10 49440276 49440276 G A FRMPD2 Silent p.N350N 0.28 TCGA-L5-A8NM-01 10 50185013 50185013 G A WDFY4 Missense_Mutation p.G3094S 0.40 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 10 50594790 50594790 T A DRGX Missense_Mutation p.I122F 0.33 tolerated(0.15) benign(0.034) TCGA-L5-A8NM-01 10 50819743 50819743 G A SLC18A3 Silent p.T319T 0.19 TCGA-L5-A8NM-01 10 54531373 54531373 G T MBL2 Missense_Mutation p.P8H 0.11 tolerated(0.09) unknown(0) TCGA-L5-A8NM-01 10 5853844 5853844 A - GDI2 Intron 0.19 TCGA-L5-A8NM-01 10 61819734 61819734 G A ANK3 Intron 0.18 TCGA-L5-A8NM-01 10 61835822 61835822 G A ANK3 Missense_Mutation p.T1606M 0.09 benign(0.255) TCGA-L5-A8NM-01 10 64966919 64966919 G A JMJD1C Missense_Mutation p.P1504S 0.23 tolerated(0.53) benign(0.001) TCGA-L5-A8NM-01 10 69866426 69866426 A - MYPN 5'Flank 0.16 TCGA-L5-A8NM-01 10 69991281 69991281 G A ATOH7 Missense_Mutation p.R52C 0.17 deleterious(0.02) probably_damaging(0.993) TCGA-L5-A8NM-01 10 70209862 70209862 A G DNA2 Missense_Mutation p.Y374H 0.12 tolerated(0.15) benign(0.005) TCGA-L5-A8NM-01 10 70246947 70246947 G A SLC25A16 Missense_Mutation p.R266W 0.30 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 10 70775971 70775972 - A KIAA1279 Frame_Shift_Ins p.I557Nfs*25 0.22 TCGA-L5-A8NM-01 10 71332488 71332488 G A NEUROG3 Silent p.D104D 0.12 TCGA-L5-A8NM-01 10 71880273 71880273 G A AIFM2 Missense_Mutation p.P166L 0.09 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NM-01 10 71921648 71921648 G T SAR1A Silent p.I8I 0.24 TCGA-L5-A8NM-01 10 72357681 72357681 C T PRF1 3'UTR 0.38 TCGA-L5-A8NM-01 10 73562688 73562688 C A CDH23 Silent p.R266R 0.12 TCGA-L5-A8NM-01 10 73820229 73820230 - C SPOCK2 3'UTR 0.24 TCGA-L5-A8NM-01 10 74767014 74767014 T C P4HA1 3'UTR 0.15 TCGA-L5-A8NM-01 10 7763614 7763614 G A ITIH2 Silent p.A247A 0.20 TCGA-L5-A8NM-01 10 79761979 79761979 T C POLR3A Missense_Mutation p.T779A 0.20 deleterious(0) benign(0.026) TCGA-L5-A8NM-01 10 79782027 79782027 C T POLR3A Missense_Mutation p.R254Q 0.22 tolerated(0.17) benign(0.037) TCGA-L5-A8NM-01 10 79785947 79785947 G A POLR3A Missense_Mutation p.R29C 0.14 tolerated(0.08) possibly_damaging(0.892) TCGA-L5-A8NM-01 10 80968093 80968093 C T ZMIZ1 Missense_Mutation p.H21Y 0.14 possibly_damaging(0.885) TCGA-L5-A8NM-01 10 8097653 8097653 G A GATA3 Missense_Mutation p.S12N 0.30 deleterious(0.01) benign(0.222) TCGA-L5-A8NM-01 10 8097679 8097679 G A GATA3 Missense_Mutation p.G21R 0.10 tolerated(0.05) possibly_damaging(0.704) TCGA-L5-A8NM-01 10 81142898 81142898 A - ZCCHC24 3'UTR 0.23 TCGA-L5-A8NM-01 10 81317336 81317336 T C SFTPA2 Missense_Mutation p.S126G 0.17 tolerated(0.08) benign(0.059) TCGA-L5-A8NM-01 10 81923157 81923157 T G ANXA11 Missense_Mutation p.N345T 0.29 deleterious(0) possibly_damaging(0.895) TCGA-L5-A8NM-01 10 86185510 86185510 T - CCSER2 Frame_Shift_Del p.F577Lfs*45 0.20 TCGA-L5-A8NM-01 10 875405 875405 G T LARP4B Missense_Mutation p.P349T 0.21 deleterious(0) probably_damaging(0.971) TCGA-L5-A8NM-01 10 88428444 88428444 C T LDB3 5'UTR 0.24 TCGA-L5-A8NM-01 10 890939 890939 T - LARP4B Frame_Shift_Del p.T163Hfs*47 0.14 TCGA-L5-A8NM-01 10 89623714 89623714 G - PTEN 5'UTR 0.38 TCGA-L5-A8NM-01 10 89720738 89720738 G A PTEN Missense_Mutation p.D297N 0.20 tolerated(0.15) benign(0.006) TCGA-L5-A8NM-01 10 89726761 89726761 A - PTEN 3'UTR 0.12 TCGA-L5-A8NM-01 10 89726860 89726861 - T PTEN 3'UTR 0.12 TCGA-L5-A8NM-01 10 91353582 91353582 G A PANK1 Missense_Mutation p.A492V 0.11 tolerated(0.21) possibly_damaging(0.889) TCGA-L5-A8NM-01 10 93038589 93038589 A - PCGF5 3'UTR 0.16 TCGA-L5-A8NM-01 10 93756247 93756247 T - BTAF1 Frame_Shift_Del p.L1146Wfs*27 0.21 TCGA-L5-A8NM-01 10 95662246 95662246 A G SLC35G1 3'UTR 0.12 TCGA-L5-A8NM-01 10 97174480 97174480 G A SORBS1 Missense_Mutation p.A194V 0.08 tolerated_low_confidence(0.12) benign(0.003) TCGA-L5-A8NM-01 10 97791816 97791817 - A CC2D2B 3'UTR 0.12 TCGA-L5-A8NM-01 10 97916214 97916214 A - ZNF518A RNA 0.11 TCGA-L5-A8NM-01 10 97918856 97918856 A - ZNF518A RNA 0.38 TCGA-L5-A8NM-01 10 98715758 98715758 T C LCOR 3'UTR 0.11 TCGA-L5-A8NM-01 11 102102495 102102495 A G YAP1 3'UTR 0.12 TCGA-L5-A8NM-01 11 102220968 102220968 C T BIRC2 Missense_Mutation p.T128M 0.13 tolerated(0.29) benign(0.007) TCGA-L5-A8NM-01 11 102666262 102666262 A G MMP1 Silent p.A234A 0.27 TCGA-L5-A8NM-01 11 105923925 105923925 A - KBTBD3 Frame_Shift_Del p.H498Mfs*4 0.15 TCGA-L5-A8NM-01 11 107462517 107462517 C T AP000889.3 Nonsense_Mutation p.R12* 0.11 TCGA-L5-A8NM-01 11 108384340 108384340 A - EXPH5 Frame_Shift_Del p.S632Pfs*35 0.15 TCGA-L5-A8NM-01 11 110448563 110448563 T - ARHGAP20 3'UTR 0.19 TCGA-L5-A8NM-01 11 111945093 111945093 G A C11orf57 5'UTR 0.10 TCGA-L5-A8NM-01 11 113103872 113103872 C - NCAM1 Frame_Shift_Del p.S560Lfs*66 0.12 TCGA-L5-A8NM-01 11 113146392 113146392 G A NCAM1 3'Flank 0.19 TCGA-L5-A8NM-01 11 1162271 1162271 G A MUC5AC Missense_Mutation p.A594T 0.15 tolerated(0.12) benign(0.203) TCGA-L5-A8NM-01 11 116706756 116706756 C T APOA1 Missense_Mutation p.S191N 0.15 deleterious(0.03) possibly_damaging(0.81) TCGA-L5-A8NM-01 11 117066901 117066901 G A SIDT2 3'UTR 0.39 TCGA-L5-A8NM-01 11 118528628 118528628 C A TREH 3'Flank 0.23 TCGA-L5-A8NM-01 11 118768513 118768513 G A BCL9L 3'UTR 0.23 TCGA-L5-A8NM-01 11 118973004 118973004 G T DPAGT1 5'UTR 0.16 TCGA-L5-A8NM-01 11 118987016 118987016 C A C2CD2L 3'UTR 0.14 TCGA-L5-A8NM-01 11 120190075 120190075 G A POU2F3 3'UTR 0.15 TCGA-L5-A8NM-01 11 120330012 120330012 A T AP000758.1 Nonsense_Mutation p.Y12* 0.22 TCGA-L5-A8NM-01 11 121489505 121489505 C T SORL1 Missense_Mutation p.T1876M 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NM-01 11 123516402 123516402 C A SCN3B Missense_Mutation p.G38C 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 11 123994433 123994433 C T VWA5A Silent p.A362A 0.16 TCGA-L5-A8NM-01 11 124765468 124765468 G A ROBO4 Silent p.S307S 0.23 TCGA-L5-A8NM-01 11 1273604 1273604 C T MUC5B Silent p.A4965A 0.20 TCGA-L5-A8NM-01 11 128331785 128331785 C - ETS1 3'UTR 0.29 TCGA-L5-A8NM-01 11 128359270 128359270 G A ETS1 Silent p.C150C 0.27 TCGA-L5-A8NM-01 11 128681037 128681037 T - FLI1 3'UTR 0.17 TCGA-L5-A8NM-01 11 128781288 128781288 G A KCNJ5 Silent p.T40T 0.17 TCGA-L5-A8NM-01 11 129827675 129827675 G A PRDM10 Missense_Mutation p.T67M 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A8NM-01 11 129991646 129991646 G T APLP2 Missense_Mutation p.E218D 0.18 tolerated(0.5) benign(0.001) TCGA-L5-A8NM-01 11 132288522 132288522 C T OPCML 3'UTR 0.24 TCGA-L5-A8NM-01 11 133790828 133790828 C T IGSF9B Missense_Mutation p.R931Q 0.18 deleterious(0) possibly_damaging(0.905) TCGA-L5-A8NM-01 11 133802093 133802093 A G IGSF9B Missense_Mutation p.L328P 0.15 deleterious(0.04) benign(0.019) TCGA-L5-A8NM-01 11 134109963 134109963 C T VPS26B Silent p.S153S 0.10 TCGA-L5-A8NM-01 11 134253746 134253746 C T B3GAT1 Missense_Mutation p.R150H 0.29 deleterious(0.02) possibly_damaging(0.469) TCGA-L5-A8NM-01 11 14515826 14515826 A T COPB1 Missense_Mutation p.I84N 0.11 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NM-01 11 15993254 15993254 G - SOX6 3'UTR 0.10 TCGA-L5-A8NM-01 11 15994037 15994037 A - SOX6 3'UTR 0.11 TCGA-L5-A8NM-01 11 17623888 17623888 C A OTOG Missense_Mutation p.L1293M 0.26 benign(0.19) TCGA-L5-A8NM-01 11 17794026 17794026 G A KCNC1 Missense_Mutation p.R462Q 0.19 tolerated(0.15) probably_damaging(0.964) TCGA-L5-A8NM-01 11 18159395 18159395 G A MRGPRX3 Missense_Mutation p.V216M 0.19 tolerated(0.14) possibly_damaging(0.624) TCGA-L5-A8NM-01 11 18631412 18631412 C T SPTY2D1 Missense_Mutation p.R685H 0.09 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NM-01 11 1890205 1890205 G A LSP1 Intron 0.26 TCGA-L5-A8NM-01 11 18956334 18956334 T C MRGPRX1 5'UTR 0.29 TCGA-L5-A8NM-01 11 2189810 2189810 C T TH Missense_Mutation p.R164H 0.31 deleterious(0.04) possibly_damaging(0.701) TCGA-L5-A8NM-01 11 2338585 2338585 G A TSPAN32 Missense_Mutation p.R244H 0.14 tolerated(0.57) benign(0) TCGA-L5-A8NM-01 11 2610023 2610023 G A KCNQ1 Silent p.T444T 0.09 TCGA-L5-A8NM-01 11 2683129 2683129 C T KCNQ1 Intron 0.23 TCGA-L5-A8NM-01 11 27679158 27679158 T G BDNF 3'UTR 0.23 TCGA-L5-A8NM-01 11 285298 285298 C A NLRP6 Silent p.T891T 0.08 TCGA-L5-A8NM-01 11 31810872 31810872 T - PAX6 3'UTR 0.19 TCGA-L5-A8NM-01 11 32675522 32675522 A G CCDC73 Splice_Site p.X278_splice 0.19 TCGA-L5-A8NM-01 11 33308839 33308839 C A HIPK3 Silent p.P293P 0.17 TCGA-L5-A8NM-01 11 33763231 33763231 G A FBXO3 3'UTR 0.20 TCGA-L5-A8NM-01 11 3423923 3423923 C T TSSC2 RNA 0.34 TCGA-L5-A8NM-01 11 34680733 34680734 - T EHF 3'UTR 0.14 TCGA-L5-A8NM-01 11 35441523 35441523 C T SLC1A2 5'Flank 0.15 TCGA-L5-A8NM-01 11 36511256 36511256 G A TRAF6 3'UTR 0.21 TCGA-L5-A8NM-01 11 3661353 3661353 T C ART5 Silent p.S102S 0.08 TCGA-L5-A8NM-01 11 3774622 3774622 G A NUP98 Silent p.T397T 0.12 TCGA-L5-A8NM-01 11 43876336 43876336 G A HSD17B12 Silent p.P252P 0.09 TCGA-L5-A8NM-01 11 44331253 44331253 C T ALX4 Silent p.P120P 0.18 TCGA-L5-A8NM-01 11 46564329 46564329 C A AMBRA1 Missense_Mutation p.G323V 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.66) TCGA-L5-A8NM-01 11 4674493 4674493 A G OR51E1 Missense_Mutation p.H246R 0.37 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 11 46751031 46751031 T C F2 Missense_Mutation p.V525A 0.40 tolerated(0.44) possibly_damaging(0.67) TCGA-L5-A8NM-01 11 47348351 47348351 G T MADD Missense_Mutation p.E1595D 0.15 tolerated(0.05) probably_damaging(0.992) TCGA-L5-A8NM-01 11 48238936 48238936 T A OR4B1 Missense_Mutation p.M192K 0.33 deleterious(0) benign(0.102) TCGA-L5-A8NM-01 11 48267012 48267012 C T OR4X2 Silent p.C119C 0.23 TCGA-L5-A8NM-01 11 4870355 4870355 T C OR51S1 Silent p.L28L 0.16 TCGA-L5-A8NM-01 11 49175878 49175878 C T FOLH1 Missense_Mutation p.C597Y 0.26 deleterious(0) probably_damaging(0.948) TCGA-L5-A8NM-01 11 49831722 49831722 C A RP11-707M1.1 RNA 0.26 TCGA-L5-A8NM-01 11 55563075 55563075 C T OR5D14 Missense_Mutation p.A15V 0.17 tolerated(0.21) benign(0.001) TCGA-L5-A8NM-01 11 5603090 5603090 A G OR52B6 Silent p.S328S 0.16 TCGA-L5-A8NM-01 11 56237709 56237709 T - OR5M3 Frame_Shift_Del p.T89Qfs*8 0.15 TCGA-L5-A8NM-01 11 56949426 56949426 C T LRRC55 Missense_Mutation p.S20L 0.15 tolerated_low_confidence(0.11) benign(0) TCGA-L5-A8NM-01 11 57067386 57067386 G - TNKS1BP1 3'UTR 0.23 TCGA-L5-A8NM-01 11 57093801 57093803 GAG - SSRP1 3'UTR 0.10 TCGA-L5-A8NM-01 11 57254668 57254668 G A SLC43A1 Missense_Mutation p.T478M 0.14 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 11 5776885 5776885 T C OR52N4 Silent p.C305C 0.12 TCGA-L5-A8NM-01 11 57948142 57948142 T - OR9Q1 3'UTR 0.35 TCGA-L5-A8NM-01 11 57958566 57958566 T G OR9Q2 Missense_Mutation p.F202V 0.10 tolerated(0.17) probably_damaging(1) TCGA-L5-A8NM-01 11 58386431 58386432 TT C ZFP91 3'UTR 0.09 TCGA-L5-A8NM-01 11 60310131 60310131 G A MS4A13 3'UTR 0.13 TCGA-L5-A8NM-01 11 60658441 60658441 G A PRPF19 3'UTR 0.15 TCGA-L5-A8NM-01 11 60689732 60689732 C A TMEM109 3'UTR 0.17 TCGA-L5-A8NM-01 11 60898198 60898198 C T VPS37C 3'UTR 0.25 TCGA-L5-A8NM-01 11 61071386 61071386 C T DDB1 Missense_Mutation p.R928H 0.14 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 11 61109365 61109365 C T DAK Silent p.D212D 0.21 TCGA-L5-A8NM-01 11 61183898 61183898 A G CPSF7 Missense_Mutation p.V258A 0.25 tolerated(0.7) benign(0.085) TCGA-L5-A8NM-01 11 61543873 61543873 C T MYRF Missense_Mutation p.R490C 0.10 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NM-01 11 61897580 61897580 G A INCENP Missense_Mutation p.R194H 0.26 tolerated(0.24) unknown(0) TCGA-L5-A8NM-01 11 6245433 6245433 C A FAM160A2 Missense_Mutation p.G62C 0.25 deleterious(0.05) probably_damaging(0.912) TCGA-L5-A8NM-01 11 63381549 63381549 G - PLA2G16 5'UTR 0.19 TCGA-L5-A8NM-01 11 64011582 64011583 - A FKBP2 3'UTR 0.22 TCGA-L5-A8NM-01 11 64060487 64060487 C T KCNK4 5'UTR 0.21 TCGA-L5-A8NM-01 11 64126867 64126869 GAG - RPS6KA4 In_Frame_Del p.E26del 0.38 TCGA-L5-A8NM-01 11 64374527 64374527 T - NRXN2 3'UTR 0.13 TCGA-L5-A8NM-01 11 6452975 6452975 G A HPX Missense_Mutation p.P342L 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 11 64599932 64599932 C A CDC42BPG Missense_Mutation p.A1019S 0.11 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 11 64606221 64606221 G A CDC42BPG Missense_Mutation p.R344W 0.37 deleterious(0) possibly_damaging(0.724) TCGA-L5-A8NM-01 11 64677266 64677266 C A ATG2A Missense_Mutation p.R665L 0.21 deleterious(0) probably_damaging(0.932) TCGA-L5-A8NM-01 11 64697795 64697795 T C PPP2R5B Missense_Mutation p.F242L 0.16 deleterious(0) benign(0.031) TCGA-L5-A8NM-01 11 6470122 6470122 A T TRIM3 3'UTR 0.19 TCGA-L5-A8NM-01 11 64953723 64953723 T C CAPN1 Missense_Mutation p.Y225H 0.31 deleterious(0.04) probably_damaging(0.998) TCGA-L5-A8NM-01 11 65320669 65320669 C T LTBP3 Silent p.Q343Q 0.11 TCGA-L5-A8NM-01 11 65386242 65386242 C - PCNXL3 Frame_Shift_Del p.H472Mfs*33 0.15 TCGA-L5-A8NM-01 11 65660629 65660629 C - FOSL1 Frame_Shift_Del p.D182Tfs*40 0.17 TCGA-L5-A8NM-01 11 65792817 65792817 C T CATSPER1 Missense_Mutation p.R345H 0.31 tolerated(0.64) benign(0.001) TCGA-L5-A8NM-01 11 65827281 65827281 T C SF3B2 Missense_Mutation p.M477T 0.15 deleterious(0.05) probably_damaging(0.967) TCGA-L5-A8NM-01 11 66010998 66010998 G A PACS1 3'UTR 0.19 TCGA-L5-A8NM-01 11 66100117 66100117 G A RIN1 Missense_Mutation p.T661I 0.36 tolerated(0.08) probably_damaging(0.932) TCGA-L5-A8NM-01 11 66239923 66239923 C T PELI3 Silent p.S146S 0.16 TCGA-L5-A8NM-01 11 66314452 66314452 G A ZDHHC24 5'Flank 0.15 TCGA-L5-A8NM-01 11 66359522 66359522 G A CCDC87 Missense_Mutation p.A322V 0.33 deleterious(0) probably_damaging(0.949) TCGA-L5-A8NM-01 11 6645455 6645456 - A DCHS1 Frame_Shift_Ins p.L2484Ffs*10 0.15 TCGA-L5-A8NM-01 11 66618621 66618621 A G PC Missense_Mutation p.S705P 0.13 deleterious(0) probably_damaging(0.964) TCGA-L5-A8NM-01 11 67051717 67051717 C - ADRBK1 Frame_Shift_Del p.L511Sfs*63 0.22 TCGA-L5-A8NM-01 11 67053845 67053845 G A ADRBK1 3'UTR 0.33 TCGA-L5-A8NM-01 11 67132695 67132695 C T CLCF1 Missense_Mutation p.R197H 0.19 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 11 67190856 67190856 T C CARNS1 Missense_Mutation p.V546A 0.12 deleterious(0) possibly_damaging(0.487) TCGA-L5-A8NM-01 11 68131293 68131293 G A LRP5 Nonsense_Mutation p.W255* 0.08 TCGA-L5-A8NM-01 11 72492334 72492334 T C STARD10 5'UTR 0.14 TCGA-L5-A8NM-01 11 726965 726965 G - EPS8L2 Frame_Shift_Del p.E713Rfs*114 0.17 TCGA-L5-A8NM-01 11 72946284 72946284 G A P2RY2 Silent p.R360R 0.22 TCGA-L5-A8NM-01 11 74203345 74203345 C T LIPT2 Silent p.T177T 0.14 TCGA-L5-A8NM-01 11 76061815 76061815 G T PRKRIR 3'UTR 0.17 TCGA-L5-A8NM-01 11 76508803 76508803 C T TSKU 3'UTR 0.28 TCGA-L5-A8NM-01 11 76890120 76890120 C T MYO7A Missense_Mutation p.A771V 0.16 tolerated(0.1) benign(0.021) TCGA-L5-A8NM-01 11 8161539 8161539 A - RIC3 Frame_Shift_Del p.L109Yfs*46 0.21 TCGA-L5-A8NM-01 11 82896654 82896654 A T PCF11 3'UTR 0.08 TCGA-L5-A8NM-01 11 83770506 83770506 C T DLG2 Silent p.R257R 0.20 TCGA-L5-A8NM-01 11 85371376 85371376 A - CREBZF 3'Flank 0.17 TCGA-L5-A8NM-01 11 89447424 89447424 G A TRIM77 Missense_Mutation p.R191H 0.17 tolerated(1) benign(0.003) TCGA-L5-A8NM-01 11 92570878 92570878 C T FAT3 Missense_Mutation p.A3425V 0.16 benign(0.126) TCGA-L5-A8NM-01 11 92616433 92616433 C T FAT3 Missense_Mutation p.P4271S 0.19 benign(0.021) TCGA-L5-A8NM-01 11 93420943 93420944 TG - KIAA1731 Frame_Shift_Del p.V417* 0.13 TCGA-L5-A8NM-01 11 94528221 94528221 C A AMOTL1 Missense_Mutation p.L32I 0.19 deleterious_low_confidence(0.01) benign(0.055) TCGA-L5-A8NM-01 11 94533455 94533455 C - AMOTL1 Frame_Shift_Del p.P368Lfs*5 0.19 TCGA-L5-A8NM-01 11 94865489 94865489 A G ENDOD1 3'UTR 0.33 TCGA-L5-A8NM-01 11 95712103 95712103 C A MAML2 3'UTR 0.23 TCGA-L5-A8NM-01 11 99690293 99690293 C A CNTN5 Missense_Mutation p.P25H 0.08 deleterious_low_confidence(0) benign(0.319) TCGA-L5-A8NM-01 12 101488063 101488063 G A ANO4 Silent p.T542T 0.37 TCGA-L5-A8NM-01 12 10342726 10342726 A G TMEM52B Missense_Mutation p.D160G 0.24 tolerated_low_confidence(0.61) benign(0.027) TCGA-L5-A8NM-01 12 104474575 104474575 G A HCFC2 Missense_Mutation p.R245Q 0.20 deleterious(0) probably_damaging(0.994) TCGA-L5-A8NM-01 12 104495909 104495909 C A HCFC2 Missense_Mutation p.P681H 0.16 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 12 104512950 104512950 A T NFYB 3'UTR 0.37 TCGA-L5-A8NM-01 12 108128295 108128295 G A PRDM4 Missense_Mutation p.R700C 0.26 deleterious(0) probably_damaging(0.91) TCGA-L5-A8NM-01 12 109634881 109634881 C T ACACB Silent p.H850H 0.13 TCGA-L5-A8NM-01 12 111085086 111085086 C A TCTN1 Missense_Mutation p.P527Q 0.34 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 12 112304016 112304016 G A MAPKAPK5 Missense_Mutation p.R56H 0.38 tolerated(0.16) possibly_damaging(0.765) TCGA-L5-A8NM-01 12 113537619 113537619 C T RASAL1 3'UTR 0.15 TCGA-L5-A8NM-01 12 113830675 113830675 G A SDS 3'UTR 0.21 TCGA-L5-A8NM-01 12 11506732 11506732 G T PRB1 Missense_Mutation p.P102Q 0.10 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NM-01 12 11546379 11546379 T C PRB2 Silent p.K211K 0.07 TCGA-L5-A8NM-01 12 117013665 117013665 G A MAP1LC3B2 5'UTR 0.30 TCGA-L5-A8NM-01 12 117703196 117703196 G - NOS1 Frame_Shift_Del p.M688Cfs*52 0.27 TCGA-L5-A8NM-01 12 117923482 117923482 C T KSR2 Missense_Mutation p.R745Q 0.23 deleterious(0.02) possibly_damaging(0.852) TCGA-L5-A8NM-01 12 120534289 120534289 G A RAB35 3'UTR 0.12 TCGA-L5-A8NM-01 12 120580391 120580391 G - GCN1L1 Frame_Shift_Del p.R1917Afs*40 0.26 TCGA-L5-A8NM-01 12 120795666 120795666 C T MSI1 Missense_Mutation p.V163M 0.31 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 12 121202176 121202176 C T SPPL3 3'UTR 0.42 TCGA-L5-A8NM-01 12 121683003 121683003 T C CAMKK2 Missense_Mutation p.N498S 0.18 deleterious(0.03) benign(0.057) TCGA-L5-A8NM-01 12 122242658 122242658 C - SETD1B Frame_Shift_Del p.H8Tfs*27 0.51 TCGA-L5-A8NM-01 12 122252481 122252481 C T SETD1B Missense_Mutation p.T787M 0.36 unknown(0) TCGA-L5-A8NM-01 12 122252612 122252612 G A SETD1B Missense_Mutation p.G831R 0.23 unknown(0) TCGA-L5-A8NM-01 12 122492854 122492854 A C BCL7A Silent p.R195R 0.13 TCGA-L5-A8NM-01 12 12279725 12279725 T C LRP6 Silent p.G1404G 0.25 TCGA-L5-A8NM-01 12 123082350 123082350 C T KNTC1 Silent p.G1476G 0.12 TCGA-L5-A8NM-01 12 123468356 123468356 G - PITPNM2 3'UTR 0.32 TCGA-L5-A8NM-01 12 123970197 123970199 CTC - RILPL1 In_Frame_Del p.E319del 0.12 TCGA-L5-A8NM-01 12 124265628 124265628 T - DNAH10 Frame_Shift_Del p.L149Cfs*40 0.18 TCGA-L5-A8NM-01 12 124272528 124272528 G T DNAH10 Missense_Mutation p.Q472H 0.08 benign(0.013) TCGA-L5-A8NM-01 12 124325934 124325934 G A DNAH10 Silent p.A1616A 0.23 TCGA-L5-A8NM-01 12 124821385 124821385 G A NCOR2 Missense_Mutation p.A2010V 0.21 benign(0.23) TCGA-L5-A8NM-01 12 124829303 124829303 C T NCOR2 Silent p.S1518S 0.39 TCGA-L5-A8NM-01 12 12483849 12483849 G A MANSC1 Silent p.P136P 0.06 TCGA-L5-A8NM-01 12 126128809 126128809 C T TMEM132B Missense_Mutation p.P537L 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 12 127229758 127229758 C A LINC00943 RNA 0.31 TCGA-L5-A8NM-01 12 129181916 129181916 A C TMEM132C Missense_Mutation p.T693P 0.30 tolerated(0.05) possibly_damaging(0.504) TCGA-L5-A8NM-01 12 129189895 129189895 C T TMEM132C Silent p.N794N 0.24 TCGA-L5-A8NM-01 12 130184428 130184428 C T TMEM132D Missense_Mutation p.V299M 0.14 tolerated(0.06) possibly_damaging(0.859) TCGA-L5-A8NM-01 12 130520718 130520718 G A RP11-474D1.3 RNA 0.35 TCGA-L5-A8NM-01 12 130856213 130856213 T - PIWIL1 3'UTR 0.30 TCGA-L5-A8NM-01 12 130926638 130926638 G A RIMBP2 Missense_Mutation p.T403M 0.28 deleterious(0.01) probably_damaging(0.97) TCGA-L5-A8NM-01 12 131360212 131360212 T G RAN Missense_Mutation p.L164R 0.27 deleterious(0) probably_damaging(0.983) TCGA-L5-A8NM-01 12 132497561 132497561 C G EP400 Missense_Mutation p.A1150G 0.11 unknown(0) TCGA-L5-A8NM-01 12 132636910 132636910 G A NOC4L Silent p.P505P 0.24 TCGA-L5-A8NM-01 12 133219301 133219301 C - POLE Frame_Shift_Del p.T1583Hfs*11 0.18 TCGA-L5-A8NM-01 12 133241907 133241907 C A POLE Missense_Mutation p.G817C 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 12 13764669 13764669 A G GRIN2B Silent p.A590A 0.19 TCGA-L5-A8NM-01 12 14825857 14825857 C - GUCY2C Frame_Shift_Del p.D374Mfs*22 0.19 TCGA-L5-A8NM-01 12 2061979 2061979 G T DCP1B Missense_Mutation p.P376H 0.14 deleterious(0) possibly_damaging(0.717) TCGA-L5-A8NM-01 12 21608074 21608074 T A PYROXD1 Missense_Mutation p.I166N 0.21 deleterious(0) possibly_damaging(0.89) TCGA-L5-A8NM-01 12 25308344 25308344 A T CASC1 Missense_Mutation p.D67E 0.11 tolerated(0.06) probably_damaging(0.98) TCGA-L5-A8NM-01 12 27628630 27628630 A - SMCO2 Frame_Shift_Del p.I162* 0.10 TCGA-L5-A8NM-01 12 28412316 28412316 G A CCDC91 Missense_Mutation p.G17D 0.09 tolerated(0.9) benign(0.074) TCGA-L5-A8NM-01 12 29670503 29670503 C T TMTC1 Missense_Mutation p.A676T 0.19 deleterious(0.05) probably_damaging(0.937) TCGA-L5-A8NM-01 12 32480649 32480649 C T BICD1 Silent p.Y420Y 0.32 TCGA-L5-A8NM-01 12 3600863 3600863 C A PRMT8 Silent p.T24T 0.17 TCGA-L5-A8NM-01 12 39046322 39046322 A T CPNE8 3'UTR 0.21 TCGA-L5-A8NM-01 12 39726115 39726115 A G KIF21A Silent p.N984N 0.34 TCGA-L5-A8NM-01 12 40345040 40345040 G A SLC2A13 Intron 0.16 TCGA-L5-A8NM-01 12 40740637 40740637 T C LRRK2 Silent p.Y2064Y 0.10 TCGA-L5-A8NM-01 12 43817528 43817528 C - ADAMTS20 Intron 0.17 TCGA-L5-A8NM-01 12 4414154 4414168 TCTTTTCTTTTTCTT CTTTTCTTTTTC CCND2 3'UTR 0.21 TCGA-L5-A8NM-01 12 44180243 44180243 T A IRAK4 Silent p.I410I 0.18 TCGA-L5-A8NM-01 12 48378778 48378778 G A COL2A1 Silent p.N611N 0.11 TCGA-L5-A8NM-01 12 4848347 4848347 T C GALNT8 Silent p.Y176Y 0.21 TCGA-L5-A8NM-01 12 4848418 4848418 C G GALNT8 Missense_Mutation p.A200G 0.24 deleterious(0) probably_damaging(0.978) TCGA-L5-A8NM-01 12 48528050 48528050 G A PFKM Missense_Mutation p.R281H 0.11 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 12 49222007 49222007 C A CACNB3 3'UTR 0.18 TCGA-L5-A8NM-01 12 49391444 49391444 C A DDN Missense_Mutation p.W405C 0.15 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A8NM-01 12 49391699 49391699 C A DDN Silent p.L320L 0.15 TCGA-L5-A8NM-01 12 49425056 49425056 G A KMT2D Missense_Mutation p.R4478W 0.19 unknown(0) TCGA-L5-A8NM-01 12 49943287 49943287 G A KCNH3 Missense_Mutation p.R511H 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NM-01 12 50026386 50026386 C T PRPF40B Missense_Mutation p.P101L 0.07 deleterious(0.03) unknown(0) TCGA-L5-A8NM-01 12 50594561 50594561 T C LIMA1 Missense_Mutation p.K324R 0.16 tolerated(0.06) probably_damaging(0.943) TCGA-L5-A8NM-01 12 51252715 51252715 A - TMPRSS12 Frame_Shift_Del p.A180Qfs*2 0.24 TCGA-L5-A8NM-01 12 51634238 51634238 A G DAZAP2 Missense_Mutation p.Y42C 0.17 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-L5-A8NM-01 12 51868866 51868866 C T SLC4A8 Missense_Mutation p.A683V 0.10 deleterious(0.04) possibly_damaging(0.807) TCGA-L5-A8NM-01 12 52631312 52631312 C T KRT7 Missense_Mutation p.H186Y 0.13 deleterious(0) benign(0.26) TCGA-L5-A8NM-01 12 52771912 52771913 - G KRT84 Frame_Shift_Ins p.L570Pfs*62 0.23 TCGA-L5-A8NM-01 12 52885367 52885367 G A KRT6A Missense_Mutation p.R232W 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 12 52985384 52985384 C T KRT72 Missense_Mutation p.S276N 0.12 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 12 53874906 53874909 TATG - MAP3K12 3'UTR 0.31 TCGA-L5-A8NM-01 12 54107679 54107679 G A CALCOCO1 Missense_Mutation p.P533S 0.50 tolerated(0.23) possibly_damaging(0.562) TCGA-L5-A8NM-01 12 54394172 54394172 C T HOXC9 Missense_Mutation p.A67V 0.15 deleterious(0.01) benign(0.316) TCGA-L5-A8NM-01 12 54576259 54576259 A - SMUG1 Frame_Shift_Del p.F145Sfs*84 0.11 TCGA-L5-A8NM-01 12 54789918 54789918 C - ITGA5 3'UTR 0.22 TCGA-L5-A8NM-01 12 54910702 54910702 C T NCKAP1L Missense_Mutation p.R341W 0.34 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 12 57110462 57110462 C T NACA Intron 0.20 TCGA-L5-A8NM-01 12 57485734 57485734 C T NAB2 Missense_Mutation p.R304C 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 12 57602955 57602955 C T LRP1 Missense_Mutation p.P4079S 0.25 possibly_damaging(0.543) TCGA-L5-A8NM-01 12 63195670 63195670 G A PPM1H Missense_Mutation p.R228C 0.34 tolerated(0.19) probably_damaging(0.984) TCGA-L5-A8NM-01 12 63541258 63541258 T G AVPR1A Missense_Mutation p.S380R 0.12 deleterious(0.02) possibly_damaging(0.774) TCGA-L5-A8NM-01 12 6458386 6458386 C T SCNN1A Missense_Mutation p.V540M 0.12 tolerated(0.27) benign(0.342) TCGA-L5-A8NM-01 12 6623452 6623452 C T NCAPD2 Silent p.Y203Y 0.12 TCGA-L5-A8NM-01 12 6646278 6646278 G - GAPDH Frame_Shift_Del p.G115Efs*21 0.20 TCGA-L5-A8NM-01 12 6700898 6700898 G T CHD4 Missense_Mutation p.L1062I 0.09 deleterious(0) possibly_damaging(0.636) TCGA-L5-A8NM-01 12 6806743 6806743 C T PIANP Missense_Mutation p.R78Q 0.27 tolerated_low_confidence(0.48) benign(0.417) TCGA-L5-A8NM-01 12 68553363 68553363 C A IFNG Missense_Mutation p.Q11H 0.39 deleterious(0.02) possibly_damaging(0.615) TCGA-L5-A8NM-01 12 6858069 6858069 C T MLF2 Silent p.R213R 0.25 TCGA-L5-A8NM-01 12 6886966 6886966 G A LAG3 Missense_Mutation p.R437H 0.16 tolerated(0.3) benign(0.007) TCGA-L5-A8NM-01 12 69633399 69633399 C T CPSF6 5'UTR 0.25 TCGA-L5-A8NM-01 12 71977667 71977667 G A LGR5 Missense_Mutation p.R626Q 0.15 tolerated(0.79) benign(0.003) TCGA-L5-A8NM-01 12 72003902 72003902 A - ZFC3H1 3'UTR 0.44 TCGA-L5-A8NM-01 12 7309000 7309000 G A CLSTN3 Intron 0.21 TCGA-L5-A8NM-01 12 7310658 7310658 C - CLSTN3 Frame_Shift_Del p.P953Hfs*106 0.27 TCGA-L5-A8NM-01 12 77416217 77416217 C T E2F7 3'UTR 0.25 TCGA-L5-A8NM-01 12 78513542 78513542 C T NAV3 Missense_Mutation p.S1189L 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NM-01 12 8186100 8186100 G - FOXJ2 5'UTR 0.19 TCGA-L5-A8NM-01 12 8327007 8327007 G A ZNF705A Missense_Mutation p.R33K 0.11 tolerated(0.24) benign(0.007) TCGA-L5-A8NM-01 12 8374830 8374830 G - FAM90A1 Frame_Shift_Del p.P328Rfs*82 0.12 TCGA-L5-A8NM-01 12 85450889 85450889 G A LRRIQ1 Missense_Mutation p.C773Y 0.16 tolerated(0.13) probably_damaging(0.934) TCGA-L5-A8NM-01 12 8756903 8756903 C T AICDA Missense_Mutation p.A192T 0.17 deleterious_low_confidence(0.01) benign(0.238) TCGA-L5-A8NM-01 12 8757882 8757882 C T AICDA Missense_Mutation p.R119H 0.24 tolerated(0.5) benign(0.161) TCGA-L5-A8NM-01 12 88890764 88890764 T A KITLG 3'UTR 0.15 TCGA-L5-A8NM-01 12 9089508 9089508 G A PHC1 Missense_Mutation p.A809T 0.09 deleterious(0) unknown(0) TCGA-L5-A8NM-01 12 94243848 94243848 T C CRADD Missense_Mutation p.M134T 0.31 deleterious(0.02) benign(0) TCGA-L5-A8NM-01 12 95501371 95501371 G T FGD6 Silent p.R1101R 0.14 TCGA-L5-A8NM-01 12 95603382 95603382 G A FGD6 Missense_Mutation p.R560W 0.21 deleterious(0) possibly_damaging(0.841) TCGA-L5-A8NM-01 12 95692928 95692928 T - VEZT Intron 0.11 TCGA-L5-A8NM-01 13 100638004 100638004 C T ZIC2 3'UTR 0.10 TCGA-L5-A8NM-01 13 101833385 101833385 C T NALCN Intron 0.30 TCGA-L5-A8NM-01 13 102220154 102220154 C T ITGBL1 Nonsense_Mutation p.Q141* 0.17 TCGA-L5-A8NM-01 13 102568949 102568949 G A FGF14 Intron 0.21 TCGA-L5-A8NM-01 13 103330657 103330657 C T TPP2 Silent p.C1247C 0.25 TCGA-L5-A8NM-01 13 107143933 107143933 G T EFNB2 3'UTR 0.14 TCGA-L5-A8NM-01 13 109496836 109496836 G A MYO16 Missense_Mutation p.E393K 0.15 deleterious(0.02) possibly_damaging(0.901) TCGA-L5-A8NM-01 13 109792756 109792756 C T MYO16 Missense_Mutation p.A1377V 0.18 tolerated(0.31) benign(0.002) TCGA-L5-A8NM-01 13 111176254 111176254 C T RAB20 Missense_Mutation p.V155M 0.28 tolerated(0.19) benign(0.063) TCGA-L5-A8NM-01 13 114622476 114622477 - C LINC00452 RNA 0.24 TCGA-L5-A8NM-01 13 20657094 20657094 A - ZMYM2 Frame_Shift_Del p.N1250Ifs*3 0.35 TCGA-L5-A8NM-01 13 20797451 20797451 G A GJB6 Nonsense_Mutation p.Q57* 0.12 TCGA-L5-A8NM-01 13 23909409 23909409 C G SACS Missense_Mutation p.C2869S 0.25 probably_damaging(0.989) TCGA-L5-A8NM-01 13 24895248 24895248 G A C1QTNF9 Missense_Mutation p.R115Q 0.16 tolerated(0.35) benign(0.003) TCGA-L5-A8NM-01 13 25915371 25915371 A G NUPL1 3'UTR 0.44 TCGA-L5-A8NM-01 13 28608066 28608066 T C FLT3 Missense_Mutation p.K634E 0.17 tolerated(0.14) benign(0.02) TCGA-L5-A8NM-01 13 28866668 28866668 A - PAN3 3'UTR 0.12 TCGA-L5-A8NM-01 13 30340401 30340401 C T UBL3 3'UTR 0.13 TCGA-L5-A8NM-01 13 31729669 31729670 - T HSPH1 Frame_Shift_Ins p.N96Kfs*13 0.18 TCGA-L5-A8NM-01 13 32376432 32376432 A C RXFP2 Missense_Mutation p.K719Q 0.27 tolerated(1) benign(0.147) TCGA-L5-A8NM-01 13 33703975 33703975 C A STARD13 Missense_Mutation p.R280L 0.18 tolerated(0.08) benign(0.314) TCGA-L5-A8NM-01 13 35644864 35644864 A C NBEA Missense_Mutation p.K482N 0.28 deleterious(0.01) benign(0.302) TCGA-L5-A8NM-01 13 36158057 36158057 A G NBEA Missense_Mutation p.K2353R 0.27 tolerated(0.07) benign(0.365) TCGA-L5-A8NM-01 13 36445420 36445421 - T DCLK1 Frame_Shift_Ins p.S294Kfs*12 0.10 TCGA-L5-A8NM-01 13 36699950 36699950 A G DCLK1 Missense_Mutation p.Y109H 0.33 deleterious(0.01) unknown(0) TCGA-L5-A8NM-01 13 37583870 37583870 T G SUPT20H Missense_Mutation p.H760P 0.23 deleterious(0.02) benign(0.047) TCGA-L5-A8NM-01 13 38154786 38154786 T C POSTN Missense_Mutation p.R481G 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NM-01 13 38156600 38156600 T G POSTN Missense_Mutation p.H432P 0.38 deleterious(0) probably_damaging(0.962) TCGA-L5-A8NM-01 13 39262085 39262085 G A FREM2 Missense_Mutation p.A202T 0.10 tolerated(0.36) benign(0.009) TCGA-L5-A8NM-01 13 40253676 40253677 - T COG6 Frame_Shift_Ins p.K184Qfs*11 0.27 TCGA-L5-A8NM-01 13 41132504 41132504 A - FOXO1 3'UTR 0.31 TCGA-L5-A8NM-01 13 42896914 42896914 T - AKAP11 3'UTR 0.28 TCGA-L5-A8NM-01 13 45602077 45602078 - A GPALPP1 Frame_Shift_Ins p.S324Ifs*2 0.17 TCGA-L5-A8NM-01 13 46542966 46542967 - T ZC3H13 Frame_Shift_Ins p.T1238Nfs*13 0.20 TCGA-L5-A8NM-01 13 49957037 49957037 T - CAB39L Frame_Shift_Del p.M4Cfs*15 0.21 TCGA-L5-A8NM-01 13 50502184 50502184 G C SPRYD7 Missense_Mutation p.N87K 0.16 deleterious(0.01) possibly_damaging(0.87) TCGA-L5-A8NM-01 13 50589421 50589421 T A TRIM13 3'Flank 0.09 TCGA-L5-A8NM-01 13 50591628 50591629 TT - TRIM13 3'Flank 0.19 TCGA-L5-A8NM-01 13 52158844 52158845 - A WDFY2 Frame_Shift_Ins p.P9Afs*69 0.30 TCGA-L5-A8NM-01 13 52348164 52348164 C T DHRS12 Missense_Mutation p.V173I 0.20 deleterious(0.03) benign(0.02) TCGA-L5-A8NM-01 13 52532637 52532637 A C ATP7B Missense_Mutation p.L722R 0.15 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 13 52593151 52593152 - A ALG11 Frame_Shift_Ins p.L52Ifs*5 0.12 TCGA-L5-A8NM-01 13 60565348 60565348 T A DIAPH3 Silent p.G435G 0.22 TCGA-L5-A8NM-01 13 61103042 61103042 T C TDRD3 Silent p.G561G 0.09 TCGA-L5-A8NM-01 13 74267776 74267776 C T KLF12 3'UTR 0.38 TCGA-L5-A8NM-01 13 76414552 76414552 C T LMO7 Missense_Mutation p.P935L 0.11 deleterious(0) probably_damaging(0.966) TCGA-L5-A8NM-01 13 77764414 77764414 G A MYCBP2 Missense_Mutation p.A1338V 0.19 probably_damaging(0.993) TCGA-L5-A8NM-01 13 77842008 77842008 G A MYCBP2 Missense_Mutation p.T404I 0.10 benign(0.132) TCGA-L5-A8NM-01 13 88327706 88327706 G A SLITRK5 Nonsense_Mutation p.W21* 0.23 TCGA-L5-A8NM-01 13 95279495 95279495 T - GPR180 3'UTR 0.20 TCGA-L5-A8NM-01 13 95696013 95696013 G A ABCC4 Missense_Mutation p.R1220W 0.37 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 14 100118894 100118894 G A HHIPL1 Missense_Mutation p.V197M 0.33 deleterious(0) probably_damaging(0.984) TCGA-L5-A8NM-01 14 100706003 100706003 G A YY1 Missense_Mutation p.G141D 0.21 tolerated(0.88) benign(0.001) TCGA-L5-A8NM-01 14 100706005 100706005 G A YY1 Missense_Mutation p.D142N 0.26 tolerated(0.11) benign(0.007) TCGA-L5-A8NM-01 14 100800874 100800874 C A WARS 3'UTR 0.24 TCGA-L5-A8NM-01 14 101489709 101489709 A G MIR411 RNA 0.24 TCGA-L5-A8NM-01 14 101492444 101492444 C - MIR758 RNA 0.23 TCGA-L5-A8NM-01 14 102550810 102550810 T - HSP90AA1 Frame_Shift_Del p.K480Rfs*20 0.27 TCGA-L5-A8NM-01 14 103894732 103894732 A - MARK3 Frame_Shift_Del p.I86* 0.22 TCGA-L5-A8NM-01 14 105354207 105354207 A G CEP170B Missense_Mutation p.M1211V 0.13 tolerated(1) benign(0.002) TCGA-L5-A8NM-01 14 105396394 105396394 G A PLD4 Silent p.R223R 0.17 TCGA-L5-A8NM-01 14 105398428 105398428 G A PLD4 Missense_Mutation p.G380R 0.30 deleterious(0.02) probably_damaging(0.973) TCGA-L5-A8NM-01 14 105420232 105420232 G A AHNAK2 Missense_Mutation p.A519V 0.10 benign(0.057) TCGA-L5-A8NM-01 14 105929561 105929561 A G MTA1 Missense_Mutation p.Y328C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NM-01 14 105936238 105936239 - G MTA1 Frame_Shift_Ins p.S639Lfs*18 0.20 TCGA-L5-A8NM-01 14 105995579 105995579 C T TMEM121 Silent p.Y136Y 0.10 TCGA-L5-A8NM-01 14 106110186 106110186 G A IGHG2 Silent p.D144D 0.30 TCGA-L5-A8NM-01 14 106237469 106237469 G A IGHG3 Missense_Mutation p.T92I 0.16 deleterious(0) probably_damaging(0.96) TCGA-L5-A8NM-01 14 106386929 106386929 A G KIAA0125 5'UTR 0.15 TCGA-L5-A8NM-01 14 19563232 19563232 T C POTEG Intron 0.49 TCGA-L5-A8NM-01 14 20763965 20763966 GA - TTC5 Frame_Shift_Del p.R249Gfs*24 0.26 TCGA-L5-A8NM-01 14 20770016 20770016 G T TTC5 Missense_Mutation p.L54I 0.12 tolerated(0.13) benign(0.034) TCGA-L5-A8NM-01 14 21052229 21052229 G - RNASE11 Frame_Shift_Del p.S136Afs*10 0.22 TCGA-L5-A8NM-01 14 21868338 21868339 - ATA CHD8 In_Frame_Ins p.Y1566dup 0.21 TCGA-L5-A8NM-01 14 22476190 22476190 C A TRAV19 Silent p.T40T 0.09 TCGA-L5-A8NM-01 14 23746015 23746018 AAAG - HOMEZ Frame_Shift_Del p.S140Lfs*27 0.24 TCGA-L5-A8NM-01 14 23746069 23746069 C T HOMEZ Missense_Mutation p.R123Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 14 23859522 23859522 G A MYH6 Missense_Mutation p.T1159M 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-L5-A8NM-01 14 23862717 23862717 A G MYH6 Missense_Mutation p.L980P 0.12 deleterious(0) probably_damaging(0.926) TCGA-L5-A8NM-01 14 23891440 23891440 C A MYH7 Missense_Mutation p.S1065I 0.16 deleterious(0) possibly_damaging(0.823) TCGA-L5-A8NM-01 14 24004094 24004094 C T ZFHX2 Silent p.A147A 0.11 TCGA-L5-A8NM-01 14 24435541 24435541 A C DHRS4 Missense_Mutation p.K194T 0.37 deleterious(0) probably_damaging(0.966) TCGA-L5-A8NM-01 14 24724024 24724024 C T TGM1 Missense_Mutation p.R645H 0.31 tolerated(0.12) possibly_damaging(0.602) TCGA-L5-A8NM-01 14 24766024 24766024 G A DHRS1 Nonsense_Mutation p.R72* 0.26 TCGA-L5-A8NM-01 14 24774255 24774255 C T NOP9 Missense_Mutation p.A622V 0.15 deleterious(0.02) possibly_damaging(0.477) TCGA-L5-A8NM-01 14 24780972 24780972 C A LTB4R2 3'UTR 0.14 TCGA-L5-A8NM-01 14 24786953 24786953 C T LTB4R 3'UTR 0.19 TCGA-L5-A8NM-01 14 24795358 24795358 G - ADCY4 Frame_Shift_Del p.R528Gfs*3 0.27 TCGA-L5-A8NM-01 14 24975364 24975364 G A CMA1 Missense_Mutation p.P157L 0.25 tolerated(0.22) benign(0.27) TCGA-L5-A8NM-01 14 29237758 29237758 T C FOXG1 Missense_Mutation p.S425P 0.10 tolerated_low_confidence(0.07) benign(0.003) TCGA-L5-A8NM-01 14 30046584 30046584 G T PRKD1 Missense_Mutation p.L867M 0.31 deleterious(0.02) benign(0.212) TCGA-L5-A8NM-01 14 31091582 31091582 C T SCFD1 Missense_Mutation p.A13V 0.12 tolerated(0.28) unknown(0) TCGA-L5-A8NM-01 14 31107414 31107414 T C SCFD1 Silent p.N132N 0.24 TCGA-L5-A8NM-01 14 33293133 33293133 T C AKAP6 Silent p.C2038C 0.17 TCGA-L5-A8NM-01 14 34269189 34269189 G A NPAS3 Missense_Mutation p.R559H 0.29 tolerated(0.36) possibly_damaging(0.84) TCGA-L5-A8NM-01 14 36986274 36986274 A T NKX2-1 3'UTR 0.29 TCGA-L5-A8NM-01 14 36986283 36986283 A C NKX2-1 3'UTR 0.13 TCGA-L5-A8NM-01 14 36986897 36986897 G A NKX2-1 Silent p.G264G 0.19 TCGA-L5-A8NM-01 14 39501130 39501130 A - SEC23A 3'UTR 0.15 TCGA-L5-A8NM-01 14 45644288 45644288 T C FANCM Silent p.Y777Y 0.24 TCGA-L5-A8NM-01 14 50901268 50901268 T A MAP4K5 Missense_Mutation p.S670C 0.18 tolerated(0.4) benign(0.007) TCGA-L5-A8NM-01 14 51026987 51026987 G A ATL1 Missense_Mutation p.A2T 0.20 deleterious_low_confidence(0.04) benign(0.037) TCGA-L5-A8NM-01 14 51237680 51237680 T - NIN Frame_Shift_Del p.E384Rfs*16 0.09 TCGA-L5-A8NM-01 14 53238780 53238780 A - STYX 3'UTR 0.17 TCGA-L5-A8NM-01 14 53527857 53527857 G A DDHD1 Missense_Mutation p.A610V 0.12 tolerated(0.15) benign(0.055) TCGA-L5-A8NM-01 14 55310393 55310393 C A GCH1 3'UTR 0.48 TCGA-L5-A8NM-01 14 56765278 56765278 T - PELI2 3'UTR 0.18 TCGA-L5-A8NM-01 14 60474815 60474815 A G LRRC9 Silent p.L1023L 0.12 TCGA-L5-A8NM-01 14 62242910 62242911 - T SNAPC1 Frame_Shift_Ins p.D214* 0.10 TCGA-L5-A8NM-01 14 64443352 64443352 G T SYNE2 Missense_Mutation p.Q400H 0.15 possibly_damaging(0.819) TCGA-L5-A8NM-01 14 64465666 64465666 C A SYNE2 Missense_Mutation p.L1130M 0.12 probably_damaging(1) TCGA-L5-A8NM-01 14 64723982 64723982 G A ESR2 Silent p.P351P 0.27 TCGA-L5-A8NM-01 14 65054868 65054868 C T PPP1R36 Missense_Mutation p.R313C 0.27 tolerated(0.1) possibly_damaging(0.678) TCGA-L5-A8NM-01 14 65482414 65482414 C - FNTB Frame_Shift_Del p.Q120Rfs*2 0.14 TCGA-L5-A8NM-01 14 66209627 66209628 - T FUT8 3'UTR 0.12 TCGA-L5-A8NM-01 14 67787969 67787969 G A MPP5 Missense_Mutation p.R578H 0.20 tolerated(1) benign(0) TCGA-L5-A8NM-01 14 67940219 67940219 C T TMEM229B Missense_Mutation p.R141H 0.22 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NM-01 14 69262957 69262957 G - ZFP36L1 5'Flank 0.24 TCGA-L5-A8NM-01 14 73159862 73159862 G T DPF3 Missense_Mutation p.L222M 0.18 deleterious(0.02) probably_damaging(0.934) TCGA-L5-A8NM-01 14 73442396 73442396 C T ZFYVE1 Missense_Mutation p.A557T 0.11 deleterious(0) probably_damaging(0.95) TCGA-L5-A8NM-01 14 73570072 73570072 G A RBM25 Missense_Mutation p.R347Q 0.42 unknown(0) TCGA-L5-A8NM-01 14 75277022 75277023 - A YLPM1 Frame_Shift_Ins p.R1711Kfs*4 0.15 TCGA-L5-A8NM-01 14 75302513 75302513 C T YLPM1 3'UTR 0.20 TCGA-L5-A8NM-01 14 76259374 76259374 G A TTLL5 Silent p.Q1034Q 0.18 TCGA-L5-A8NM-01 14 77229004 77229004 T - VASH1 5'UTR 0.41 TCGA-L5-A8NM-01 14 80328925 80328925 T - NRXN3 3'Flank 0.23 TCGA-L5-A8NM-01 14 85996121 85996121 G A FLRT2 5'Flank 0.08 TCGA-L5-A8NM-01 14 89016861 89016861 A G PTPN21 5'UTR 0.15 TCGA-L5-A8NM-01 14 89163272 89163272 T C EML5 Missense_Mutation p.I755V 0.13 tolerated(1) benign(0.002) TCGA-L5-A8NM-01 14 89181397 89181398 - T EML5 Frame_Shift_Ins p.V444Sfs*9 0.26 TCGA-L5-A8NM-01 14 89623421 89623421 A - FOXN3 3'UTR 0.24 TCGA-L5-A8NM-01 14 90485719 90485719 T A TDP1 Missense_Mutation p.I534N 0.12 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NM-01 14 90650656 90650657 - G KCNK13 Frame_Shift_Ins p.Q181Afs*3 0.28 TCGA-L5-A8NM-01 14 90874518 90874518 T C CALM1 3'UTR 0.15 TCGA-L5-A8NM-01 14 92601793 92601795 AGA - CPSF2 In_Frame_Del p.E169del 0.16 TCGA-L5-A8NM-01 14 93429193 93429193 G A ITPK1 Silent p.D122D 0.13 TCGA-L5-A8NM-01 14 94956095 94956095 G A SERPINA12 Silent p.D305D 0.31 TCGA-L5-A8NM-01 14 95570269 95570269 G A DICER1 Missense_Mutation p.T1155M 0.30 tolerated_low_confidence(0.12) benign(0.094) TCGA-L5-A8NM-01 14 96752247 96752247 C T ATG2B Missense_Mutation p.V2028M 0.37 deleterious(0) probably_damaging(0.994) TCGA-L5-A8NM-01 14 99637690 99637690 T - BCL11B 3'UTR 0.16 TCGA-L5-A8NM-01 15 101170282 101170283 - A ASB7 Intron 0.13 TCGA-L5-A8NM-01 15 23198619 23198619 T C WHAMMP3 RNA 0.13 TCGA-L5-A8NM-01 15 23330372 23330372 A G HERC2P2 Intron 0.18 TCGA-L5-A8NM-01 15 23689141 23689141 G A GOLGA6L2 Missense_Mutation p.A125V 0.39 benign(0.192) TCGA-L5-A8NM-01 15 23812683 23812683 T - MKRN3 3'UTR 0.27 TCGA-L5-A8NM-01 15 23890893 23890894 - G MAGEL2 Frame_Shift_Ins p.Q63Pfs*47 0.35 TCGA-L5-A8NM-01 15 25221489 25221489 C T SNRPN Missense_Mutation p.R65W 0.10 deleterious(0.04) possibly_damaging(0.723) TCGA-L5-A8NM-01 15 25456847 25456847 G T SNORD115-22 3'Flank 0.17 TCGA-L5-A8NM-01 15 26790986 26790986 A - GABRB3 3'UTR 0.08 TCGA-L5-A8NM-01 15 27018130 27018130 C T GABRB3 5'UTR 0.40 TCGA-L5-A8NM-01 15 27128522 27128522 A C GABRA5 Missense_Mutation p.K105N 0.27 tolerated(0.34) probably_damaging(0.999) TCGA-L5-A8NM-01 15 28171296 28171297 - A OCA2 Frame_Shift_Ins p.A686Cfs*55 0.22 TCGA-L5-A8NM-01 15 30926445 30926445 T - ARHGAP11B Frame_Shift_Del p.F125Lfs*18 0.20 TCGA-L5-A8NM-01 15 31776544 31776544 C A OTUD7A Silent p.S578S 0.19 TCGA-L5-A8NM-01 15 34077887 34077887 A G RYR3 Missense_Mutation p.E3098G 0.39 benign(0.02) TCGA-L5-A8NM-01 15 34158806 34158806 T C AVEN 3'UTR 0.27 TCGA-L5-A8NM-01 15 34628900 34628900 A - SLC12A6 5'UTR 0.25 TCGA-L5-A8NM-01 15 36984338 36984338 C T C15orf41 Silent p.N146N 0.15 TCGA-L5-A8NM-01 15 38786678 38786678 G A RASGRP1 Missense_Mutation p.R722W 0.35 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-L5-A8NM-01 15 40099386 40099387 - T GPR176 Frame_Shift_Ins p.N82Kfs*75 0.08 TCGA-L5-A8NM-01 15 40318214 40318214 C T EIF2AK4 Missense_Mutation p.R1476C 0.45 deleterious(0.02) benign(0.112) TCGA-L5-A8NM-01 15 40596215 40596215 G A PLCB2 Missense_Mutation p.T50M 0.17 deleterious(0.01) possibly_damaging(0.807) TCGA-L5-A8NM-01 15 40648424 40648424 C - PHGR1 Frame_Shift_Del p.H59Tfs*49 0.29 TCGA-L5-A8NM-01 15 41624711 41624711 G - OIP5 Frame_Shift_Del p.R17Gfs*28 0.31 TCGA-L5-A8NM-01 15 42147436 42147436 G T SPTBN5 Missense_Mutation p.L3137M 0.27 probably_damaging(1) TCGA-L5-A8NM-01 15 42437801 42437801 C T PLA2G4F Silent p.E584E 0.22 TCGA-L5-A8NM-01 15 42982290 42982290 T C STARD9 Silent p.P2838P 0.20 TCGA-L5-A8NM-01 15 43252855 43252855 T - UBR1 Frame_Shift_Del p.N1582Tfs*13 0.33 TCGA-L5-A8NM-01 15 43512976 43512976 C T EPB42 Silent p.L16L 0.09 TCGA-L5-A8NM-01 15 43748969 43748969 C A TP53BP1 Nonsense_Mutation p.E613* 0.21 TCGA-L5-A8NM-01 15 43931160 43931160 C T CATSPER2 Missense_Mutation p.V262I 0.14 deleterious(0.01) benign(0.008) TCGA-L5-A8NM-01 15 44028271 44028271 G A RNU6-354P 5'Flank 0.22 TCGA-L5-A8NM-01 15 45668948 45668948 G - GATM Frame_Shift_Del p.R47Gfs*29 0.20 TCGA-L5-A8NM-01 15 45777062 45777062 G A SLC30A4 3'UTR 0.15 TCGA-L5-A8NM-01 15 48719918 48719918 G A FBN1 Silent p.I2350I 0.15 TCGA-L5-A8NM-01 15 48784744 48784744 T - FBN1 Frame_Shift_Del p.N923Mfs*19 0.15 TCGA-L5-A8NM-01 15 49935658 49935658 A G DTWD1 Silent p.L266L 0.07 TCGA-L5-A8NM-01 15 50978954 50978954 A G TRPM7 5'UTR 0.24 TCGA-L5-A8NM-01 15 52842959 52842959 A - ARPP19 3'UTR 0.46 TCGA-L5-A8NM-01 15 53081028 53081028 T C ONECUT1 Missense_Mutation p.K352E 0.23 deleterious(0) probably_damaging(0.978) TCGA-L5-A8NM-01 15 56122187 56122187 G T NEDD4 Missense_Mutation p.L1218M 0.11 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NM-01 15 57565313 57565313 C T TCF12 Missense_Mutation p.R611C 0.21 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 15 59931126 59931126 A - GTF2A2 3'UTR 0.17 TCGA-L5-A8NM-01 15 62165519 62165519 T - VPS13C Frame_Shift_Del p.R3502Efs*5 0.14 TCGA-L5-A8NM-01 15 62316019 62316019 T - VPS13C Frame_Shift_Del p.K158Nfs*33 0.12 TCGA-L5-A8NM-01 15 64430012 64430012 G T SNX1 Intron 0.24 TCGA-L5-A8NM-01 15 65868695 65868695 A - PTPLAD1 Frame_Shift_Del p.K358Rfs*17 0.22 TCGA-L5-A8NM-01 15 66187802 66187802 A T MEGF11 3'UTR 0.14 TCGA-L5-A8NM-01 15 68695277 68695277 G A ITGA11 Silent p.H48H 0.14 TCGA-L5-A8NM-01 15 69548596 69548596 C T GLCE Missense_Mutation p.R151W 0.30 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 15 70349819 70349819 C T TLE3 Silent p.S413S 0.17 TCGA-L5-A8NM-01 15 72073077 72073077 C T THSD4 3'UTR 0.17 TCGA-L5-A8NM-01 15 72559896 72559896 C T PARP6 5'UTR 0.14 TCGA-L5-A8NM-01 15 74174063 74174063 C T TBC1D21 Missense_Mutation p.R83W 0.22 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 15 74427610 74427610 G A ISLR2 3'UTR 0.21 TCGA-L5-A8NM-01 15 74883534 74883534 C T ARID3B Silent p.A308A 0.26 TCGA-L5-A8NM-01 15 75593356 75593356 C T DNM1P34 RNA 0.21 TCGA-L5-A8NM-01 15 75641538 75641538 C T NEIL1 Missense_Mutation p.H98Y 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 15 75902272 75902272 C T SNUPN Missense_Mutation p.V123M 0.38 deleterious(0.05) benign(0.082) TCGA-L5-A8NM-01 15 75941407 75941407 C A SNX33 5'UTR 0.25 TCGA-L5-A8NM-01 15 77241648 77241648 T - RCN2 3'UTR 0.16 TCGA-L5-A8NM-01 15 77472838 77472838 G A PEAK1 Silent p.V477V 0.20 TCGA-L5-A8NM-01 15 77906417 77906417 G A LINGO1 Missense_Mutation p.A611V 0.19 deleterious(0.01) benign(0.217) TCGA-L5-A8NM-01 15 78762887 78762887 T C IREB2 Silent p.L215L 0.08 TCGA-L5-A8NM-01 15 78775707 78775707 A - IREB2 Frame_Shift_Del p.R450Dfs*8 0.10 TCGA-L5-A8NM-01 15 78917544 78917544 C - CHRNB4 Frame_Shift_Del p.L477Sfs*82 0.16 TCGA-L5-A8NM-01 15 81296263 81296263 T - MESDC1 3'UTR 0.31 TCGA-L5-A8NM-01 15 81593817 81593817 C T IL16 Silent p.I1094I 0.16 TCGA-L5-A8NM-01 15 83699022 83699022 A G BTBD1 Silent p.F307F 0.11 TCGA-L5-A8NM-01 15 84708157 84708157 A G ADAMTSL3 3'UTR 0.10 TCGA-L5-A8NM-01 15 84868578 84868579 - C AC136698.1 3'Flank 0.28 TCGA-L5-A8NM-01 15 85198627 85198627 A G NMB Silent p.A113A 0.23 TCGA-L5-A8NM-01 15 85348971 85348973 TTG - ZNF592 3'UTR 0.33 TCGA-L5-A8NM-01 15 86122542 86122542 C A AKAP13 Missense_Mutation p.L415I 0.22 tolerated(0.05) benign(0.008) TCGA-L5-A8NM-01 15 86278265 86278265 C T AKAP13 Missense_Mutation p.T2446I 0.11 deleterious(0.04) benign(0.358) TCGA-L5-A8NM-01 15 86284337 86284337 G A AKAP13 Missense_Mutation p.A2561T 0.11 tolerated(0.12) possibly_damaging(0.457) TCGA-L5-A8NM-01 15 90163024 90163024 G A TICRR Silent p.P1035P 0.13 TCGA-L5-A8NM-01 15 90320197 90320197 G A MESP2 Silent p.G203G 0.55 TCGA-L5-A8NM-01 15 90771824 90771824 C - SEMA4B Frame_Shift_Del p.R823Gfs*18 0.27 TCGA-L5-A8NM-01 15 91426580 91426580 T - FURIN 3'UTR 0.18 TCGA-L5-A8NM-01 15 91448834 91448834 C T MAN2A2 Missense_Mutation p.P139L 0.19 deleterious(0) benign(0.251) TCGA-L5-A8NM-01 15 91453730 91453730 G - MAN2A2 Splice_Site p.X528_splice 0.10 TCGA-L5-A8NM-01 15 94364263 94364263 C T CTD-3049M7.1 RNA 0.28 TCGA-L5-A8NM-01 15 96881226 96881264 TCCAAATTATTAATTGTCCTGTGTCTATGTACCTCTAGC CCAAATTATTAATTGTCCTGTGTTTTTGTACCTCTAGCAACA NR2F2 3'UTR 0.12 TCGA-L5-A8NM-01 16 11272339 11272339 C A CLEC16A Missense_Mutation p.P985H 0.18 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A8NM-01 16 11554935 11554935 G A CTD-3088G3.8 Silent p.A1117A 0.17 TCGA-L5-A8NM-01 16 11773555 11773555 G A TXNDC11 Silent p.S791S 0.21 TCGA-L5-A8NM-01 16 11824630 11824630 A T TXNDC11 Missense_Mutation p.S190R 0.08 tolerated(0.68) benign(0.106) TCGA-L5-A8NM-01 16 1254304 1254304 G A CACNA1H Missense_Mutation p.R766K 0.13 tolerated(0.58) benign(0.001) TCGA-L5-A8NM-01 16 1259364 1259364 C T CACNA1H Silent p.I1232I 0.22 TCGA-L5-A8NM-01 16 1260418 1260418 C T CACNA1H Silent p.H1298H 0.16 TCGA-L5-A8NM-01 16 1306980 1306980 C T TPSD1 Missense_Mutation p.T146M 0.24 tolerated(0.2) benign(0.367) TCGA-L5-A8NM-01 16 15815323 15815323 C T MYH11 Missense_Mutation p.E1519K 0.25 possibly_damaging(0.864) TCGA-L5-A8NM-01 16 1797089 1797089 C T MAPK8IP3 Silent p.T268T 0.08 TCGA-L5-A8NM-01 16 1840901 1840901 C G IGFALS Silent p.G544G 0.17 TCGA-L5-A8NM-01 16 18817102 18817102 C T SMG1 3'UTR 0.17 TCGA-L5-A8NM-01 16 1918176 1918176 T - MEIOB Frame_Shift_Del p.M1? 0.24 TCGA-L5-A8NM-01 16 2069670 2069670 C T NPW 5'UTR 0.08 TCGA-L5-A8NM-01 16 2070538 2070538 T C NPW Missense_Mutation p.L139P 0.33 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-L5-A8NM-01 16 21128571 21128572 - A DNAH3 Frame_Shift_Ins p.L589Ffs*27 0.11 TCGA-L5-A8NM-01 16 21136676 21136676 G A DNAH3 Silent p.C408C 0.22 TCGA-L5-A8NM-01 16 2139829 2139829 G A PKD1 Missense_Mutation p.P4271S 0.12 benign(0.002) TCGA-L5-A8NM-01 16 2153688 2153688 C T PKD1 Silent p.P2790P 0.31 TCGA-L5-A8NM-01 16 22448870 22448870 C G RRN3P3 RNA 0.36 TCGA-L5-A8NM-01 16 23695251 23695251 C T PLK1 Missense_Mutation p.R293C 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 16 2374411 2374411 C T ABCA3 Silent p.P147P 0.21 TCGA-L5-A8NM-01 16 24105543 24105543 T C PRKCB Missense_Mutation p.L249S 0.19 tolerated(0.1) benign(0.043) TCGA-L5-A8NM-01 16 24226980 24226980 A G PRKCB 3'UTR 0.23 TCGA-L5-A8NM-01 16 24583221 24583221 G A RBBP6 Missense_Mutation p.V1612I 0.15 tolerated_low_confidence(0.63) unknown(0) TCGA-L5-A8NM-01 16 24583890 24583890 G A RBBP6 3'UTR 0.11 TCGA-L5-A8NM-01 16 2487250 2487250 C T CCNF Missense_Mutation p.P156L 0.19 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 16 24919407 24919407 G A SLC5A11 Silent p.A463A 0.17 TCGA-L5-A8NM-01 16 24960750 24960750 G A ARHGAP17 Missense_Mutation p.P368S 0.10 deleterious(0.02) probably_damaging(0.985) TCGA-L5-A8NM-01 16 25143764 25143764 G A LCMT1 Missense_Mutation p.A83T 0.08 tolerated(0.17) benign(0.014) TCGA-L5-A8NM-01 16 2651644 2651644 A - PDPK1 3'UTR 0.11 TCGA-L5-A8NM-01 16 27549607 27549607 C - GTF3C1 Frame_Shift_Del p.D168Ifs*4 0.15 TCGA-L5-A8NM-01 16 28909403 28909403 C T ATP2A1 Missense_Mutation p.A501V 0.13 tolerated(0.23) benign(0.001) TCGA-L5-A8NM-01 16 28912091 28912091 G A ATP2A1 Missense_Mutation p.A652T 0.11 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 16 28995600 28995600 G A SPNS1 Missense_Mutation p.V523M 0.16 deleterious_low_confidence(0.01) probably_damaging(0.986) TCGA-L5-A8NM-01 16 29824720 29824721 - A PRRT2 Frame_Shift_Ins p.E117Rfs*17 0.30 TCGA-L5-A8NM-01 16 29825277 29825277 C A PRRT2 Intron 0.22 TCGA-L5-A8NM-01 16 29912622 29912622 C T ASPHD1 Silent p.S110S 0.33 TCGA-L5-A8NM-01 16 30012361 30012361 G A INO80E Silent p.S132S 0.11 TCGA-L5-A8NM-01 16 30018407 30018407 G A DOC2A Missense_Mutation p.A220V 0.31 tolerated(0.2) benign(0.008) TCGA-L5-A8NM-01 16 30615890 30615890 G T ZNF689 Missense_Mutation p.L400M 0.20 tolerated(0.21) probably_damaging(0.942) TCGA-L5-A8NM-01 16 3071775 3071775 C T TNFRSF12A Missense_Mutation p.P113L 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 16 30720875 30720876 - A SRCAP Frame_Shift_Ins p.A228Sfs*14 0.09 TCGA-L5-A8NM-01 16 30846161 30846161 C T BCL7C 3'UTR 0.33 TCGA-L5-A8NM-01 16 30975958 30975958 C T SETD1A Missense_Mutation p.R299W 0.33 probably_damaging(0.973) TCGA-L5-A8NM-01 16 31044421 31044421 C T STX4 5'Flank 0.14 TCGA-L5-A8NM-01 16 31072399 31072399 C A ZNF668 Missense_Mutation p.G640V 0.12 deleterious_low_confidence(0) probably_damaging(0.964) TCGA-L5-A8NM-01 16 31090803 31090803 G A ZNF646 Missense_Mutation p.R1053H 0.26 deleterious(0.02) probably_damaging(0.996) TCGA-L5-A8NM-01 16 31120725 31120725 G A BCKDK Missense_Mutation p.A61T 0.11 tolerated(0.58) benign(0.003) TCGA-L5-A8NM-01 16 31196405 31196405 C T FUS Silent p.G223G 0.23 TCGA-L5-A8NM-01 16 31473498 31473498 G A ARMC5 Silent p.S210S 0.21 TCGA-L5-A8NM-01 16 3304660 3304660 C T MEFV Silent p.G136G 0.20 TCGA-L5-A8NM-01 16 348180 348180 G - AXIN1 Frame_Shift_Del p.A443Lfs*37 0.19 TCGA-L5-A8NM-01 16 3713375 3713375 G A TRAP1 Intron 0.22 TCGA-L5-A8NM-01 16 3843431 3843431 A G CREBBP Missense_Mutation p.V391A 0.10 probably_damaging(0.998) TCGA-L5-A8NM-01 16 3900661 3900661 G - CREBBP Frame_Shift_Del p.A146Lfs*6 0.10 TCGA-L5-A8NM-01 16 449018 449018 C T NME4 Silent p.T40T 0.16 TCGA-L5-A8NM-01 16 4812297 4812297 G A ZNF500 Missense_Mutation p.S213L 0.30 deleterious(0.01) benign(0.028) TCGA-L5-A8NM-01 16 48264360 48264360 C T ABCC11 Missense_Mutation p.R75H 0.31 tolerated(0.05) benign(0.226) TCGA-L5-A8NM-01 16 4924667 4924668 - A UBN1 Frame_Shift_Ins p.P755Tfs*17 0.26 TCGA-L5-A8NM-01 16 49315200 49315200 G A CBLN1 Silent p.S59S 0.15 TCGA-L5-A8NM-01 16 49669799 49669799 G T ZNF423 Silent p.P1088P 0.10 TCGA-L5-A8NM-01 16 50263437 50263455 AGCAAGCAAAAAAGAGGGA GCAAGCAAAAAAGAGGG PAPD5 3'UTR 0.25 TCGA-L5-A8NM-01 16 50583337 50583337 C T NKD1 Silent p.D21D 0.08 TCGA-L5-A8NM-01 16 50707477 50707477 C T SNX20 Missense_Mutation p.R264H 0.07 tolerated(0.1) probably_damaging(0.912) TCGA-L5-A8NM-01 16 50707923 50707923 C T SNX20 Silent p.R115R 0.30 TCGA-L5-A8NM-01 16 50733562 50733562 G T NOD2 Missense_Mutation p.Q79H 0.23 tolerated(0.07) benign(0.071) TCGA-L5-A8NM-01 16 53276879 53276880 - A CHD9 Frame_Shift_Ins p.N1004Kfs*2 0.23 TCGA-L5-A8NM-01 16 53488648 53488648 C T RBL2 Missense_Mutation p.A358V 0.07 deleterious(0.02) possibly_damaging(0.589) TCGA-L5-A8NM-01 16 54317531 54317531 T - IRX3 3'UTR 0.22 TCGA-L5-A8NM-01 16 56704942 56704942 C T MT1H 3'UTR 0.30 TCGA-L5-A8NM-01 16 56865798 56865798 G T NUP93 Missense_Mutation p.R377M 0.19 deleterious(0) probably_damaging(0.977) TCGA-L5-A8NM-01 16 56996989 56996989 C T CETP Silent p.G62G 0.14 TCGA-L5-A8NM-01 16 57917946 57917946 C A CNGB1 3'UTR 0.31 TCGA-L5-A8NM-01 16 58010398 58010398 G A TEPP Missense_Mutation p.C8Y 0.14 tolerated_low_confidence(0.15) benign(0.025) TCGA-L5-A8NM-01 16 58550438 58550440 AGA - SETD6 In_Frame_Del p.K179del 0.25 TCGA-L5-A8NM-01 16 58559970 58559970 A G CNOT1 Missense_Mutation p.F2176L 0.14 tolerated(0.21) benign(0.042) TCGA-L5-A8NM-01 16 65038589 65038589 C T CDH11 Missense_Mutation p.V62M 0.10 deleterious(0) probably_damaging(0.934) TCGA-L5-A8NM-01 16 66612868 66612868 C T CMTM1 Silent p.P275P 0.19 TCGA-L5-A8NM-01 16 66957796 66957796 C T RRAD Missense_Mutation p.V133M 0.42 deleterious(0) probably_damaging(0.976) TCGA-L5-A8NM-01 16 66977773 66977773 C T CES2 Missense_Mutation p.P573S 0.10 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NM-01 16 67244705 67244705 C T AC040160.1 Missense_Mutation p.G99S 0.14 tolerated(0.44) benign(0.073) TCGA-L5-A8NM-01 16 67679113 67679113 G A RLTPR 5'UTR 0.37 TCGA-L5-A8NM-01 16 67688485 67688485 C A RLTPR Missense_Mutation p.P1158T 0.11 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 16 67757957 67757957 A G RANBP10 3'UTR 0.15 TCGA-L5-A8NM-01 16 67858656 67858658 GAG - TSNAXIP1 In_Frame_Del p.E165del 0.12 TCGA-L5-A8NM-01 16 67965003 67965003 G A CTRL Nonsense_Mutation p.Q52* 0.25 TCGA-L5-A8NM-01 16 68842356 68842356 G A CDH1 Silent p.L139L 0.12 TCGA-L5-A8NM-01 16 68894134 68894134 G A TANGO6 Missense_Mutation p.V148I 0.12 deleterious(0.02) benign(0.03) TCGA-L5-A8NM-01 16 69152342 69152342 C T HAS3 3'Flank 0.26 TCGA-L5-A8NM-01 16 69353432 69353432 G - VPS4A Frame_Shift_Del p.E204Rfs*143 0.12 TCGA-L5-A8NM-01 16 69905829 69905829 G A WWP2 Missense_Mutation p.G233D 0.31 tolerated(0.13) benign(0.073) TCGA-L5-A8NM-01 16 69921970 69921971 - C WWP2 Frame_Shift_Ins p.E246Rfs*35 0.21 TCGA-L5-A8NM-01 16 70415756 70415756 A G ST3GAL2 Missense_Mutation p.Y297H 0.19 benign(0.009) TCGA-L5-A8NM-01 16 71482629 71482629 G A ZNF23 Silent p.S433S 0.34 TCGA-L5-A8NM-01 16 71679287 71679287 A G PHLPP2 3'UTR 0.14 TCGA-L5-A8NM-01 16 72057492 72057492 G A DHODH Missense_Mutation p.V365I 0.29 tolerated(0.33) benign(0.058) TCGA-L5-A8NM-01 16 72133686 72133686 C T DHX38 Missense_Mutation p.P339L 0.12 deleterious(0.01) possibly_damaging(0.716) TCGA-L5-A8NM-01 16 74447571 74447571 C T CLEC18B Missense_Mutation p.V154M 0.08 deleterious(0) probably_damaging(0.989) TCGA-L5-A8NM-01 16 74752984 74752984 C T FA2H Missense_Mutation p.E230K 0.14 deleterious(0) probably_damaging(0.939) TCGA-L5-A8NM-01 16 75512843 75512843 A T CHST6 Missense_Mutation p.L295H 0.30 deleterious(0) probably_damaging(0.976) TCGA-L5-A8NM-01 16 76555129 76555129 T - CNTNAP4 Frame_Shift_Del p.F748Lfs*11 0.17 TCGA-L5-A8NM-01 16 78011528 78011528 G A VAT1L Missense_Mutation p.G399E 0.12 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A8NM-01 16 780264 780264 G A NARFL 3'UTR 0.30 TCGA-L5-A8NM-01 16 79630857 79630857 A - MAF Intron 0.36 TCGA-L5-A8NM-01 16 830602 830602 C T MSLNL Silent p.A133A 0.18 TCGA-L5-A8NM-01 16 84228780 84228780 C T ADAD2 Missense_Mutation p.A310V 0.07 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NM-01 16 85009892 85009892 G C ZDHHC7 3'UTR 0.43 TCGA-L5-A8NM-01 16 86602228 86602228 C T FOXC2 Silent p.S429S 0.25 TCGA-L5-A8NM-01 16 8729076 8729076 C A METTL22 Missense_Mutation p.L203I 0.20 deleterious(0.04) benign(0.378) TCGA-L5-A8NM-01 16 87364978 87364978 G T FBXO31 Silent p.V512V 0.25 TCGA-L5-A8NM-01 16 87369001 87369001 G T FBXO31 Missense_Mutation p.P302H 0.09 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 16 87436702 87436702 A - MAP1LC3B Frame_Shift_Del 0.16 TCGA-L5-A8NM-01 16 87730402 87730402 C T JPH3 3'UTR 0.16 TCGA-L5-A8NM-01 16 88498417 88498417 C T ZNF469 Silent p.S1485S 0.28 TCGA-L5-A8NM-01 16 88709879 88709879 G A CYBA Missense_Mutation p.P157L 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 16 88872230 88872230 C T CDT1 Missense_Mutation p.T262I 0.14 tolerated(0.42) benign(0.006) TCGA-L5-A8NM-01 16 8889941 8889941 C T TMEM186 Silent p.R170R 0.18 TCGA-L5-A8NM-01 16 88958316 88958316 G A CBFA2T3 Missense_Mutation p.R229W 0.27 deleterious(0.04) possibly_damaging(0.849) TCGA-L5-A8NM-01 16 89657608 89657608 G A CPNE7 Silent p.A489A 0.14 TCGA-L5-A8NM-01 16 89758878 89758878 G A CDK10 Missense_Mutation p.V147M 0.16 deleterious(0.02) benign(0.213) TCGA-L5-A8NM-01 16 90001340 90001340 G A TUBB3 Missense_Mutation p.D161N 0.11 deleterious_low_confidence(0.02) benign(0.374) TCGA-L5-A8NM-01 16 9000392 9000393 - T USP7 Frame_Shift_Ins p.T440Nfs*4 0.25 TCGA-L5-A8NM-01 17 10309410 10309410 C T MYH8 Missense_Mutation p.V794I 0.19 tolerated(0.39) benign(0.001) TCGA-L5-A8NM-01 17 10348449 10348449 A G MYH4 Silent p.A1770A 0.26 TCGA-L5-A8NM-01 17 10543993 10543993 G T MYH3 Missense_Mutation p.L726M 0.12 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 17 10546239 10546239 G A MYH3 Silent p.F495F 0.27 TCGA-L5-A8NM-01 17 10546312 10546312 T A MYH3 Missense_Mutation p.Y471F 0.10 tolerated(1) benign(0.001) TCGA-L5-A8NM-01 17 12493915 12493915 T C LINC00670 RNA 0.22 TCGA-L5-A8NM-01 17 17250123 17250123 C T NT5M Silent p.A183A 0.10 TCGA-L5-A8NM-01 17 18058717 18058717 C T MYO15A Silent p.G2810G 0.27 TCGA-L5-A8NM-01 17 18138543 18138543 G A LLGL1 Missense_Mutation p.V401M 0.16 deleterious(0) possibly_damaging(0.797) TCGA-L5-A8NM-01 17 18647920 18647920 C T FBXW10 Silent p.I121I 0.14 TCGA-L5-A8NM-01 17 20914527 20914527 C T USP22 Missense_Mutation p.G347D 0.24 tolerated(0.39) benign(0.005) TCGA-L5-A8NM-01 17 21094406 21094406 G A DHRS7B Silent p.G306G 0.24 TCGA-L5-A8NM-01 17 2268625 2268625 G A SGSM2 Silent p.R426R 0.10 TCGA-L5-A8NM-01 17 2287676 2287676 G T MNT 3'UTR 0.22 TCGA-L5-A8NM-01 17 25915549 25915549 C T KSR1 Missense_Mutation p.S208L 0.10 deleterious(0.01) benign(0.094) TCGA-L5-A8NM-01 17 27002426 27002426 C T SUPT6H Silent p.D182D 0.23 TCGA-L5-A8NM-01 17 27028124 27028124 C T SUPT6H Missense_Mutation p.R1658W 0.41 deleterious(0.04) possibly_damaging(0.617) TCGA-L5-A8NM-01 17 27051859 27051859 C - TLCD1 Frame_Shift_Del p.G138Vfs*3 0.18 TCGA-L5-A8NM-01 17 27958431 27958431 G A SSH2 Missense_Mutation p.R1234C 0.29 deleterious(0.04) benign(0.014) TCGA-L5-A8NM-01 17 28400762 28400762 C T EFCAB5 Intron 0.23 TCGA-L5-A8NM-01 17 30817690 30817690 A - CDK5R1 3'UTR 0.32 TCGA-L5-A8NM-01 17 32908115 32908115 G A TMEM132E Missense_Mutation p.G7D 0.14 deleterious_low_confidence(0.02) unknown(0) TCGA-L5-A8NM-01 17 33285609 33285609 T C CCT6B Silent p.L102L 0.27 TCGA-L5-A8NM-01 17 33462280 33462280 C A NLE1 Missense_Mutation p.G401V 0.10 deleterious(0) possibly_damaging(0.882) TCGA-L5-A8NM-01 17 33586775 33586775 C T SLFN5 Intron 0.50 TCGA-L5-A8NM-01 17 3480936 3480936 G - SHPK Frame_Shift_Del p.R557Afs*12 0.25 TCGA-L5-A8NM-01 17 3513905 3513905 G A SHPK Silent p.V462V 0.50 TCGA-L5-A8NM-01 17 36622835 36622835 G T ARHGAP23 Missense_Mutation p.R304L 0.25 deleterious(0.01) benign(0.137) TCGA-L5-A8NM-01 17 36634129 36634129 G A ARHGAP23 Missense_Mutation p.E810K 0.14 tolerated(0.09) benign(0.217) TCGA-L5-A8NM-01 17 37309306 37309306 C T PLXDC1 5'Flank 0.19 TCGA-L5-A8NM-01 17 37881000 37881000 G A ERBB2 Missense_Mutation p.V777M 0.28 tolerated(0.27) possibly_damaging(0.643) TCGA-L5-A8NM-01 17 38061045 38061045 G T GSDMB 3'UTR 0.10 TCGA-L5-A8NM-01 17 38077409 38077409 C T ORMDL3 3'Flank 0.31 TCGA-L5-A8NM-01 17 3808604 3808604 G A P2RX1 Silent p.V65V 0.09 TCGA-L5-A8NM-01 17 38133236 38133236 C - GSDMA Frame_Shift_Del p.P422Qfs*33 0.19 TCGA-L5-A8NM-01 17 38244561 38244561 G A THRA Missense_Mutation p.A264T 0.14 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 17 38282534 38282535 AG - MSL1 Frame_Shift_Del p.E29Gfs*6 0.36 TCGA-L5-A8NM-01 17 38437121 38437121 T - WIPF2 3'UTR 0.13 TCGA-L5-A8NM-01 17 38711212 38711212 C T CCR7 Missense_Mutation p.A307T 0.10 tolerated(0.05) probably_damaging(0.998) TCGA-L5-A8NM-01 17 39092612 39092612 G A KRT23 Missense_Mutation p.R82C 0.06 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 17 39135256 39135256 G A KRT40 Silent p.T332T 0.21 TCGA-L5-A8NM-01 17 39216157 39216157 C T KRTAP2-3 Missense_Mutation p.R49H 0.39 tolerated(0.34) probably_damaging(0.996) TCGA-L5-A8NM-01 17 39684217 39684217 G T KRT19 Missense_Mutation p.L95M 0.29 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NM-01 17 39925671 39925671 G A JUP Missense_Mutation p.P156L 0.19 tolerated(0.11) benign(0.003) TCGA-L5-A8NM-01 17 40823464 40823464 C T PLEKHH3 Missense_Mutation p.A397T 0.15 tolerated(0.05) unknown(0) TCGA-L5-A8NM-01 17 42275066 42275066 G A ATXN7L3 Silent p.V28V 0.19 TCGA-L5-A8NM-01 17 42635889 42635889 G A FZD2 Missense_Mutation p.R278Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 17 43183339 43183339 A T NMT1 3'UTR 0.12 TCGA-L5-A8NM-01 17 43183340 43183340 T A NMT1 3'UTR 0.12 TCGA-L5-A8NM-01 17 4389804 4389805 - G SPNS3 Frame_Shift_Ins p.G462Rfs*29 0.09 TCGA-L5-A8NM-01 17 44076968 44076968 A G STH Missense_Mutation p.H108R 0.15 deleterious_low_confidence(0) benign(0.402) TCGA-L5-A8NM-01 17 4514128 4514128 G T SMTNL2 3'Flank 0.19 TCGA-L5-A8NM-01 17 45473323 45473323 T C EFCAB13 Missense_Mutation p.L642S 0.20 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NM-01 17 4578192 4578192 G A PELP1 Missense_Mutation p.S445L 0.10 probably_damaging(0.969) TCGA-L5-A8NM-01 17 45915667 45915667 T C SCRN2 Missense_Mutation p.Q363R 0.11 deleterious(0.03) probably_damaging(0.909) TCGA-L5-A8NM-01 17 46626552 46626552 T - HOXB3 3'UTR 0.09 TCGA-L5-A8NM-01 17 47006155 47006157 AGA - UBE2Z 3'UTR 0.34 TCGA-L5-A8NM-01 17 47230172 47230172 C - B4GALNT2 Frame_Shift_Del p.R183Afs*22 0.26 TCGA-L5-A8NM-01 17 47293972 47293972 G A ABI3 Missense_Mutation p.G66D 0.22 tolerated(0.09) possibly_damaging(0.864) TCGA-L5-A8NM-01 17 47788822 47788822 A G FAM117A Missense_Mutation p.L386P 0.19 deleterious(0) probably_damaging(0.994) TCGA-L5-A8NM-01 17 47797720 47797720 G T FAM117A Missense_Mutation p.L181I 0.21 tolerated(0.35) benign(0.18) TCGA-L5-A8NM-01 17 4804100 4804100 G T CHRNE Missense_Mutation p.P302Q 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 17 4805288 4805288 C T CHRNE Missense_Mutation p.V147I 0.26 deleterious(0) benign(0.007) TCGA-L5-A8NM-01 17 48069105 48069105 C T DLX3 Missense_Mutation p.A214T 0.53 tolerated(0.08) benign(0.001) TCGA-L5-A8NM-01 17 48432899 48432899 C T XYLT2 Missense_Mutation p.R349W 0.70 deleterious(0) probably_damaging(0.956) TCGA-L5-A8NM-01 17 4849207 4849207 A G PFN1 Silent p.R137R 0.16 TCGA-L5-A8NM-01 17 48939677 48939678 - T TOB1 3'UTR 0.55 TCGA-L5-A8NM-01 17 4997522 4997522 A - ZFP3 3'UTR 0.30 TCGA-L5-A8NM-01 17 53342662 53342662 T A HLF 5'UTR 0.71 TCGA-L5-A8NM-01 17 57474689 57474689 G A YPEL2 3'UTR 0.18 TCGA-L5-A8NM-01 17 57663593 57663593 A G DHX40 Missense_Mutation p.R475G 0.45 tolerated(0.09) benign(0.01) TCGA-L5-A8NM-01 17 57886165 57886165 C A VMP1 Silent p.A241A 0.09 TCGA-L5-A8NM-01 17 58040251 58040251 G A RNFT1 Silent p.L151L 0.60 TCGA-L5-A8NM-01 17 60690852 60690852 G A TLK2 3'Flank 0.12 TCGA-L5-A8NM-01 17 60755885 60755885 G A MRC2 Silent p.L691L 0.50 TCGA-L5-A8NM-01 17 61909547 61909547 C A SMARCD2 3'UTR 0.21 TCGA-L5-A8NM-01 17 61911039 61911039 C T SMARCD2 Missense_Mutation p.D409N 0.14 deleterious(0) possibly_damaging(0.627) TCGA-L5-A8NM-01 17 61958422 61958422 T C GH2 Silent p.T86T 0.08 TCGA-L5-A8NM-01 17 62018159 62018159 C T SCN4A Missense_Mutation p.R1828H 0.15 tolerated_low_confidence(0.21) benign(0.002) TCGA-L5-A8NM-01 17 63531800 63531800 C T AXIN2 Silent p.S727S 0.29 TCGA-L5-A8NM-01 17 66425048 66425048 G A WIPI1 Missense_Mutation p.A332V 0.65 tolerated(0.05) benign(0.007) TCGA-L5-A8NM-01 17 67170425 67170425 A - ABCA10 Frame_Shift_Del p.F1053Lfs*4 0.36 TCGA-L5-A8NM-01 17 68174852 68174852 A - KCNJ2 3'UTR 0.26 TCGA-L5-A8NM-01 17 6921298 6921298 A G RNASEK 3'Flank 0.29 TCGA-L5-A8NM-01 17 7080615 7080615 C T ASGR1 Missense_Mutation p.R34H 0.18 tolerated(0.25) benign(0.061) TCGA-L5-A8NM-01 17 71334569 71334569 G A SDK2 3'UTR 0.33 TCGA-L5-A8NM-01 17 71344794 71344794 T C SDK2 Missense_Mutation p.I2037V 0.17 tolerated(1) benign(0.007) TCGA-L5-A8NM-01 17 7165359 7165359 C A CLDN7 Missense_Mutation p.A2S 0.14 deleterious(0.01) probably_damaging(0.983) TCGA-L5-A8NM-01 17 7221133 7221133 G T NEURL4 Silent p.P1393P 0.17 TCGA-L5-A8NM-01 17 7259514 7259514 G - TMEM95 Frame_Shift_Del p.G119Afs*51 0.15 TCGA-L5-A8NM-01 17 72758236 72758236 G C SLC9A3R1 Missense_Mutation p.G176A 0.16 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 17 7329696 7329696 G A C17orf74 Missense_Mutation p.R129H 0.24 tolerated(0.37) probably_damaging(0.923) TCGA-L5-A8NM-01 17 73621202 73621202 G T RECQL5 3'Flank 0.16 TCGA-L5-A8NM-01 17 7363375 7363375 T - ZBTB4 3'UTR 0.12 TCGA-L5-A8NM-01 17 74072797 74072797 G - GALR2 Frame_Shift_Del p.L152Cfs*10 0.19 TCGA-L5-A8NM-01 17 74077707 74077707 G - ZACN Frame_Shift_Del p.L253Cfs*10 0.23 TCGA-L5-A8NM-01 17 74396248 74396248 C - UBE2O Frame_Shift_Del p.E379Rfs*8 0.28 TCGA-L5-A8NM-01 17 7460641 7460641 T C TNFSF12 Intron 0.27 TCGA-L5-A8NM-01 17 74936521 74936521 C - MGAT5B Frame_Shift_Del p.L552Wfs*71 0.19 TCGA-L5-A8NM-01 17 7554708 7554708 G - ATP1B2 5'UTR 0.22 TCGA-L5-A8NM-01 17 7608923 7608923 C - EFNB3 Frame_Shift_Del p.H5Ifs*54 0.22 TCGA-L5-A8NM-01 17 76135299 76135299 G T TMC8 Missense_Mutation p.R627M 0.43 tolerated(0.08) benign(0.009) TCGA-L5-A8NM-01 17 76798547 76798547 T - USP36 Frame_Shift_Del p.R961Efs*9 0.19 TCGA-L5-A8NM-01 17 77093503 77093503 G A RBFOX3 Missense_Mutation p.T209M 0.29 deleterious(0.04) probably_damaging(0.932) TCGA-L5-A8NM-01 17 7757744 7757744 A - KDM6B 3'UTR 0.15 TCGA-L5-A8NM-01 17 7801849 7801849 G A CHD3 Missense_Mutation p.R755H 0.31 possibly_damaging(0.522) TCGA-L5-A8NM-01 17 78086479 78086479 C A GAA Missense_Mutation p.S619R 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NM-01 17 78163639 78163639 C T CARD14 Missense_Mutation p.R311W 0.20 deleterious(0) possibly_damaging(0.891) TCGA-L5-A8NM-01 17 78176100 78176100 C T CARD14 Silent p.N700N 0.14 TCGA-L5-A8NM-01 17 78367233 78367233 C A RNF213 Missense_Mutation p.L5187I 0.25 possibly_damaging(0.804) TCGA-L5-A8NM-01 17 7839717 7839717 C T CNTROB Nonsense_Mutation p.R210* 0.21 TCGA-L5-A8NM-01 17 79204524 79204524 C T ENTHD2 Intron 0.14 TCGA-L5-A8NM-01 17 79430642 79430642 G A RP11-1055B8.7 Silent p.A2542A 0.60 TCGA-L5-A8NM-01 17 79615000 79615000 C T TSPAN10 Silent p.R248R 0.08 TCGA-L5-A8NM-01 17 79845989 79845989 G A ALYREF 3'UTR 0.14 TCGA-L5-A8NM-01 17 79892835 79892835 G A PYCR1 Silent p.A169A 0.13 TCGA-L5-A8NM-01 17 80373456 80373456 C A OGFOD3 Missense_Mutation p.R41M 0.15 deleterious(0.04) possibly_damaging(0.893) TCGA-L5-A8NM-01 17 80401904 80401904 G A C17orf62 Silent p.A180A 0.15 TCGA-L5-A8NM-01 17 8135521 8135521 A G CTC1 Silent p.A695A 0.34 TCGA-L5-A8NM-01 17 8706548 8706548 G - PIK3R6 3'UTR 0.08 TCGA-L5-A8NM-01 18 12329672 12329672 G A AFG3L2 Silent p.G762G 0.09 TCGA-L5-A8NM-01 18 12699055 12699055 C T CEP76 Missense_Mutation p.R148H 0.12 tolerated(0.05) possibly_damaging(0.809) TCGA-L5-A8NM-01 18 14339551 14339551 C A CYP4F35P RNA 0.30 TCGA-L5-A8NM-01 18 14478405 14478405 C T CXADRP3 RNA 0.28 TCGA-L5-A8NM-01 18 14478662 14478662 T - CXADRP3 RNA 0.24 TCGA-L5-A8NM-01 18 18622641 18622641 A G ROCK1 Silent p.V235V 0.17 TCGA-L5-A8NM-01 18 20606158 20606158 T C RBBP8 Silent p.P883P 0.13 TCGA-L5-A8NM-01 18 21218906 21218906 A G ANKRD29 Silent p.G79G 0.13 TCGA-L5-A8NM-01 18 28605749 28605749 G A DSC3 Missense_Mutation p.R203C 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NM-01 18 29867973 29867973 G A GAREM Missense_Mutation p.P196L 0.19 deleterious(0.03) probably_damaging(1) TCGA-L5-A8NM-01 18 42532404 42532404 T - SETBP1 Frame_Shift_Del p.L1035Yfs*26 0.16 TCGA-L5-A8NM-01 18 44040614 44040614 G A RNF165 3'UTR 0.18 TCGA-L5-A8NM-01 18 45367775 45367775 A G SMAD2 3'UTR 0.07 TCGA-L5-A8NM-01 18 46690133 46690133 T - DYM Frame_Shift_Del p.K495Nfs*13 0.10 TCGA-L5-A8NM-01 18 47329181 47329182 - A ACAA2 Frame_Shift_Ins p.Y20Lfs*12 0.24 TCGA-L5-A8NM-01 18 48450472 48450472 G A ME2 Missense_Mutation p.R354Q 0.16 deleterious(0) probably_damaging(0.94) TCGA-L5-A8NM-01 18 51750459 51750459 G - MBD2 Frame_Shift_Del p.G158Dfs*7 0.22 TCGA-L5-A8NM-01 18 53302976 53302976 C A TCF4 Missense_Mutation p.W51C 0.29 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NM-01 18 5406823 5406823 C T EPB41L3 Missense_Mutation p.A768T 0.12 tolerated(0.27) benign(0.005) TCGA-L5-A8NM-01 18 5406836 5406836 G - EPB41L3 Frame_Shift_Del p.V764Cfs*12 0.20 TCGA-L5-A8NM-01 18 54281803 54281804 - T TXNL1 Frame_Shift_Ins p.I196Nfs*12 0.11 TCGA-L5-A8NM-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.23 TCGA-L5-A8NM-01 18 57026329 57026329 A T LMAN1 Missense_Mutation p.Y50N 0.07 deleterious(0) probably_damaging(0.94) TCGA-L5-A8NM-01 18 60985684 60985684 C T BCL2 Silent p.L72L 0.43 TCGA-L5-A8NM-01 18 67759942 67759942 G T RTTN Silent p.S1334S 0.15 TCGA-L5-A8NM-01 18 67863751 67863751 A - RTTN Frame_Shift_Del p.F276Sfs*69 0.11 TCGA-L5-A8NM-01 18 6873435 6873435 G T ARHGAP28 Missense_Mutation p.G169C 0.19 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 18 6995375 6995375 G A LAMA1 Missense_Mutation p.T1626M 0.28 tolerated(1) benign(0.327) TCGA-L5-A8NM-01 18 72589289 72589289 G A ZNF407 Missense_Mutation p.A1672T 0.41 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NM-01 18 72632566 72632566 C A ZNF407 Silent p.T1782T 0.14 TCGA-L5-A8NM-01 18 743079 743079 G A YES1 Missense_Mutation p.T300M 0.16 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NM-01 18 77927006 77927006 C T AC139100.2 3'UTR 0.10 TCGA-L5-A8NM-01 18 7955190 7955190 G A PTPRM Missense_Mutation p.A304T 0.31 tolerated(0.49) benign(0.259) TCGA-L5-A8NM-01 18 8378288 8378288 C T PTPRM Missense_Mutation p.A1163V 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-L5-A8NM-01 18 8818982 8818982 C T SOGA2 Missense_Mutation p.R961W 0.21 tolerated(0.05) possibly_damaging(0.858) TCGA-L5-A8NM-01 18 8825003 8825003 G A SOGA2 Silent p.T1165T 0.24 TCGA-L5-A8NM-01 18 905349 905349 T C ADCYAP1 5'UTR 0.11 TCGA-L5-A8NM-01 18 9536346 9536346 C T RALBP1 3'UTR 0.19 TCGA-L5-A8NM-01 18 9547802 9547802 C T PPP4R1 Silent p.A946A 0.27 TCGA-L5-A8NM-01 18 9954468 9954471 ATAA - VAPA 3'Flank 0.10 TCGA-L5-A8NM-01 19 10217080 10217080 T A PPAN-P2RY11 Missense_Mutation p.S4T 0.15 tolerated(0.07) possibly_damaging(0.543) TCGA-L5-A8NM-01 19 10224313 10224313 C T PPAN-P2RY11 Silent p.A428A 0.07 TCGA-L5-A8NM-01 19 10254537 10254537 G A DNMT1 Silent p.Y1007Y 0.12 TCGA-L5-A8NM-01 19 10369991 10369991 G A MRPL4 Intron 0.25 TCGA-L5-A8NM-01 19 10578271 10578271 G - PDE4A Frame_Shift_Del p.S881Qfs*92 0.16 TCGA-L5-A8NM-01 19 10610255 10610255 A G KEAP1 Missense_Mutation p.V152A 0.18 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 19 10625120 10625120 C T S1PR5 Missense_Mutation p.A190T 0.17 tolerated(0.34) probably_damaging(0.989) TCGA-L5-A8NM-01 19 10697913 10697913 C T AP1M2 5'UTR 0.11 TCGA-L5-A8NM-01 19 1073742 1073742 C T HMHA1 Silent p.S256S 0.30 TCGA-L5-A8NM-01 19 10789292 10789292 C T ILF3 Missense_Mutation p.T188M 0.42 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NM-01 19 10941695 10941695 G A DNM2 Missense_Mutation p.R862H 0.15 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NM-01 19 11319375 11319375 C T DOCK6 Missense_Mutation p.G1692D 0.22 tolerated(0.41) benign(0.024) TCGA-L5-A8NM-01 19 11565666 11565666 G A ELAVL3 Missense_Mutation p.S260L 0.15 deleterious(0.04) benign(0.023) TCGA-L5-A8NM-01 19 1221309 1221310 TG - STK11 Frame_Shift_Del p.C278Wfs*6 0.11 TCGA-L5-A8NM-01 19 12494418 12494418 G A CTD-3105H18.14 Silent p.Y29Y 0.12 TCGA-L5-A8NM-01 19 1268346 1268346 G A CIRBP Intron 0.14 TCGA-L5-A8NM-01 19 13211729 13211729 G A LYL1 Missense_Mutation p.P86L 0.11 tolerated(0.06) benign(0.362) TCGA-L5-A8NM-01 19 13246434 13246434 C T NACC1 Missense_Mutation p.A138V 0.17 tolerated(0.11) benign(0.041) TCGA-L5-A8NM-01 19 13250818 13250818 G - NACC1 3'UTR 0.50 TCGA-L5-A8NM-01 19 13879210 13879210 A G MRI1 Intron 0.17 TCGA-L5-A8NM-01 19 14070191 14070191 C - DCAF15 Frame_Shift_Del p.P375Lfs*45 0.14 TCGA-L5-A8NM-01 19 14104410 14104410 G A RFX1 Silent p.P82P 0.24 TCGA-L5-A8NM-01 19 14288527 14288527 G A LPHN1 Silent p.L34L 0.22 TCGA-L5-A8NM-01 19 14591506 14591506 C T GIPC1 Missense_Mutation p.A125T 0.20 deleterious(0.02) probably_damaging(0.99) TCGA-L5-A8NM-01 19 14593518 14593518 G A GIPC1 Missense_Mutation p.R91C 0.26 tolerated(0.08) benign(0.076) TCGA-L5-A8NM-01 19 14991541 14991541 A G OR7A17 Silent p.G209G 0.33 TCGA-L5-A8NM-01 19 15067364 15067364 C T SLC1A6 Missense_Mutation p.V365I 0.32 tolerated(1) benign(0) TCGA-L5-A8NM-01 19 15218306 15218306 G A SYDE1 Missense_Mutation p.R21Q 0.36 tolerated_low_confidence(0.05) benign(0.357) TCGA-L5-A8NM-01 19 15224472 15224472 C T SYDE1 Missense_Mutation p.R636W 0.20 deleterious(0) probably_damaging(0.915) TCGA-L5-A8NM-01 19 15587229 15587229 G A PGLYRP2 Silent p.C84C 0.15 TCGA-L5-A8NM-01 19 15838913 15838913 C - OR10H2 Frame_Shift_Del p.H22Tfs*4 0.12 TCGA-L5-A8NM-01 19 15852911 15852911 C T OR10H3 Missense_Mutation p.H237Y 0.13 tolerated(0.31) benign(0.007) TCGA-L5-A8NM-01 19 16006403 16006403 G - CYP4F2 Frame_Shift_Del p.Q86Rfs*53 0.13 TCGA-L5-A8NM-01 19 1611093 1611093 A - TCF3 3'UTR 0.10 TCGA-L5-A8NM-01 19 16243329 16243330 - T RAB8A 3'UTR 0.15 TCGA-L5-A8NM-01 19 16910773 16910773 G A NWD1 Missense_Mutation p.R1179H 0.37 tolerated(0.53) benign(0.008) TCGA-L5-A8NM-01 19 17062998 17062998 A G CPAMD8 Silent p.G810G 0.46 TCGA-L5-A8NM-01 19 17312772 17312772 G A MYO9B Missense_Mutation p.S1534N 0.14 tolerated(0.31) benign(0.322) TCGA-L5-A8NM-01 19 17323436 17323436 A G MYO9B 3'UTR 0.11 TCGA-L5-A8NM-01 19 17443959 17443961 TCC - ANO8 In_Frame_Del p.E146del 0.28 TCGA-L5-A8NM-01 19 1795906 1795906 C - ATP8B3 Frame_Shift_Del p.A675Qfs*97 0.14 TCGA-L5-A8NM-01 19 18271903 18271903 C T PIK3R2 Missense_Mutation p.A169V 0.20 tolerated(0.44) benign(0.089) TCGA-L5-A8NM-01 19 18703011 18703011 G A C19orf60 3'UTR 0.38 TCGA-L5-A8NM-01 19 1918987 1918987 G A SCAMP4 Silent p.A131A 0.25 TCGA-L5-A8NM-01 19 19456168 19456168 C T MAU2 Missense_Mutation p.T404M 0.24 tolerated(0.09) possibly_damaging(0.677) TCGA-L5-A8NM-01 19 1986408 1986408 G - BTBD2 3'UTR 0.22 TCGA-L5-A8NM-01 19 2038031 2038031 C - MKNK2 3'UTR 0.23 TCGA-L5-A8NM-01 19 21131730 21131730 G A ZNF85 Missense_Mutation p.C137Y 0.21 deleterious(0.05) benign(0.111) TCGA-L5-A8NM-01 19 21300892 21300892 T C ZNF714 Silent p.H474H 0.44 TCGA-L5-A8NM-01 19 22156673 22156673 T C ZNF208 Missense_Mutation p.K388R 0.18 tolerated(0.38) probably_damaging(0.992) TCGA-L5-A8NM-01 19 22271877 22271877 G A ZNF257 Missense_Mutation p.R442Q 0.15 tolerated(0.56) benign(0.005) TCGA-L5-A8NM-01 19 22784509 22784509 A - AC011467.1 5'Flank 0.37 TCGA-L5-A8NM-01 19 22784760 22784760 A G AC011467.1 5'Flank 0.26 TCGA-L5-A8NM-01 19 23316942 23316942 G A ZNF730 Missense_Mutation p.D22N 0.21 tolerated(0.08) probably_damaging(0.989) TCGA-L5-A8NM-01 19 2353292 2353292 G A LLfos-48D6.1 Intron 0.33 TCGA-L5-A8NM-01 19 2405411 2405411 T C TMPRSS9 Missense_Mutation p.I203T 0.22 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 19 2737237 2737237 C T SLC39A3 Missense_Mutation p.A7T 0.13 deleterious(0.03) possibly_damaging(0.745) TCGA-L5-A8NM-01 19 2834366 2834366 A G ZNF554 Missense_Mutation p.K378R 0.24 deleterious(0.02) benign(0.254) TCGA-L5-A8NM-01 19 308584 308584 C T MIER2 Missense_Mutation p.M397I 0.13 tolerated(0.3) benign(0.01) TCGA-L5-A8NM-01 19 308916 308916 G A MIER2 Missense_Mutation p.R332W 0.29 deleterious(0) benign(0.009) TCGA-L5-A8NM-01 19 30934476 30934477 - A ZNF536 Frame_Shift_Ins p.A4Sfs*15 0.29 TCGA-L5-A8NM-01 19 31766708 31766708 A - TSHZ3 3'UTR 0.33 TCGA-L5-A8NM-01 19 32844630 32844630 G A ZNF507 Silent p.A298A 0.17 TCGA-L5-A8NM-01 19 33168301 33168301 G A RGS9BP 3'UTR 0.23 TCGA-L5-A8NM-01 19 33168355 33168355 A G RGS9BP 3'UTR 0.28 TCGA-L5-A8NM-01 19 33623177 33623177 C A WDR88 Silent p.S34S 0.12 TCGA-L5-A8NM-01 19 33878909 33878909 C T PEPD Missense_Mutation p.V411M 0.31 deleterious(0) probably_damaging(0.945) TCGA-L5-A8NM-01 19 34263896 34263896 G A CHST8 Silent p.Q401Q 0.12 TCGA-L5-A8NM-01 19 34843710 34843710 C T KIAA0355 Silent p.A1021A 0.18 TCGA-L5-A8NM-01 19 35084404 35084404 C T SCGB2B2 3'UTR 0.27 TCGA-L5-A8NM-01 19 3544900 3544900 G T MFSD12 Missense_Mutation p.H443N 0.32 benign(0.334) TCGA-L5-A8NM-01 19 35823799 35823799 G A CD22 Nonsense_Mutation p.W128* 0.25 TCGA-L5-A8NM-01 19 35832639 35832639 G - CD22 Frame_Shift_Del p.D604Tfs*3 0.45 TCGA-L5-A8NM-01 19 36046453 36046454 - T ATP4A Frame_Shift_Ins p.D683Gfs*50 0.15 TCGA-L5-A8NM-01 19 36047856 36047856 C T ATP4A Missense_Mutation p.V610I 0.17 deleterious(0) probably_damaging(0.994) TCGA-L5-A8NM-01 19 36212475 36212475 G T KMT2B Missense_Mutation p.Q742H 0.17 probably_damaging(0.948) TCGA-L5-A8NM-01 19 36227710 36227710 G T KMT2B Nonsense_Mutation p.E2427* 0.58 TCGA-L5-A8NM-01 19 36227817 36227817 G A KMT2B Silent p.A2434A 0.18 TCGA-L5-A8NM-01 19 36278975 36278975 G A ARHGAP33 Missense_Mutation p.V1009I 0.28 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-L5-A8NM-01 19 36431206 36431206 C T LRFN3 Silent p.C293C 0.44 TCGA-L5-A8NM-01 19 36633868 36633868 C T CAPNS1 Missense_Mutation p.H131Y 0.33 tolerated(0.07) benign(0.092) TCGA-L5-A8NM-01 19 36642594 36642594 G A COX7A1 Missense_Mutation p.R27C 0.21 deleterious(0) benign(0.024) TCGA-L5-A8NM-01 19 38189877 38189877 A G ZNF607 Silent p.G385G 0.14 TCGA-L5-A8NM-01 19 38375481 38375481 A G WDR87 3'Flank 0.33 TCGA-L5-A8NM-01 19 38573645 38573645 G T SIPA1L3 Missense_Mutation p.K480N 0.16 deleterious(0.01) possibly_damaging(0.638) TCGA-L5-A8NM-01 19 38795990 38795990 G A YIF1B 3'UTR 0.32 TCGA-L5-A8NM-01 19 39038962 39038962 G A RYR1 Missense_Mutation p.D4062N 0.22 benign(0.001) TCGA-L5-A8NM-01 19 39127545 39127545 G T EIF3K Missense_Mutation p.M214I 0.22 tolerated(0.09) benign(0.001) TCGA-L5-A8NM-01 19 39208640 39208640 G A ACTN4 Missense_Mutation p.R406H 0.17 deleterious(0.02) probably_damaging(0.969) TCGA-L5-A8NM-01 19 39663724 39663724 C T PAK4 Missense_Mutation p.T124M 0.15 tolerated(0.07) benign(0.001) TCGA-L5-A8NM-01 19 40317456 40317456 G - DYRK1B Frame_Shift_Del p.L423Wfs*80 0.15 TCGA-L5-A8NM-01 19 4047451 4047452 - A ZBTB7A 3'UTR 0.15 TCGA-L5-A8NM-01 19 4047531 4047531 C T ZBTB7A 3'UTR 0.18 TCGA-L5-A8NM-01 19 40729296 40729297 - G CNTD2 Frame_Shift_Ins p.Q224Pfs*54 0.21 TCGA-L5-A8NM-01 19 41633836 41633836 C T CYP2F1 Missense_Mutation p.A442V 0.15 deleterious(0.01) benign(0.33) TCGA-L5-A8NM-01 19 41829625 41829625 G A CCDC97 3'UTR 0.23 TCGA-L5-A8NM-01 19 41860681 41860681 G A B9D2 Missense_Mutation p.T151I 0.20 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NM-01 19 42509894 42509894 G A GRIK5 Silent p.Y748Y 0.11 TCGA-L5-A8NM-01 19 42753368 42753368 C - ERF Frame_Shift_Del p.G299Efs*12 0.23 TCGA-L5-A8NM-01 19 42797376 42797376 C - CIC Frame_Shift_Del p.P1248Hfs*54 0.22 TCGA-L5-A8NM-01 19 42840447 42840447 C - MEGF8 Frame_Shift_Del p.S400Pfs*21 0.16 TCGA-L5-A8NM-01 19 43257204 43257204 C A PSG8 3'Flank 0.21 TCGA-L5-A8NM-01 19 4422628 4422629 AG - CHAF1A Frame_Shift_Del p.E362Gfs*20 0.19 TCGA-L5-A8NM-01 19 4433174 4433174 G A CHAF1A Missense_Mutation p.G771S 0.10 tolerated(0.29) benign(0.037) TCGA-L5-A8NM-01 19 44571252 44571253 - A ZNF223 Frame_Shift_Ins p.P427Tfs*5 0.23 TCGA-L5-A8NM-01 19 4516633 4516633 T C PLIN4 Missense_Mutation p.E70G 0.25 tolerated(0.24) benign(0.009) TCGA-L5-A8NM-01 19 45537526 45537526 G A RELB Missense_Mutation p.R411Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 19 45899677 45899677 G T PPP1R13L Silent p.R244R 0.17 TCGA-L5-A8NM-01 19 45976872 45976872 C - FOSB 3'UTR 0.18 TCGA-L5-A8NM-01 19 46025800 46025800 C T VASP Silent p.A227A 0.45 TCGA-L5-A8NM-01 19 46214172 46214172 C - FBXO46 3'UTR 0.13 TCGA-L5-A8NM-01 19 46404933 46404933 G A MYPOP Silent p.R33R 0.36 TCGA-L5-A8NM-01 19 46973894 46973894 G - PNMAL1 Frame_Shift_Del p.T134Pfs*57 0.16 TCGA-L5-A8NM-01 19 47124440 47124440 C G PTGIR 3'UTR 0.28 TCGA-L5-A8NM-01 19 47424426 47424426 C T ARHGAP35 Missense_Mutation p.R832W 0.30 deleterious(0) possibly_damaging(0.893) TCGA-L5-A8NM-01 19 47634198 47634200 AGG - SAE1 In_Frame_Del p.E6del 0.31 TCGA-L5-A8NM-01 19 4792689 4792689 T C FEM1A Missense_Mutation p.S275P 0.12 deleterious(0.03) benign(0) TCGA-L5-A8NM-01 19 48041514 48041514 G - ZNF541 Frame_Shift_Del p.Y1013Tfs*50 0.15 TCGA-L5-A8NM-01 19 48184449 48184449 G A GLTSCR1 Silent p.P674P 0.20 TCGA-L5-A8NM-01 19 48206181 48206181 C T GLTSCR1 3'UTR 0.17 TCGA-L5-A8NM-01 19 48219925 48219925 G A EHD2 Missense_Mutation p.R19H 0.11 tolerated(0.1) benign(0.001) TCGA-L5-A8NM-01 19 48578049 48578049 C T PLA2G4C Silent p.Q337Q 0.28 TCGA-L5-A8NM-01 19 49003054 49003054 G T LMTK3 Silent p.P453P 0.21 TCGA-L5-A8NM-01 19 49129476 49129476 G C SPHK2 Missense_Mutation p.G123A 0.50 tolerated(0.26) benign(0.053) TCGA-L5-A8NM-01 19 49344468 49344468 G A PLEKHA4 Missense_Mutation p.R615W 0.24 deleterious_low_confidence(0) possibly_damaging(0.513) TCGA-L5-A8NM-01 19 49344558 49344558 C T PLEKHA4 Missense_Mutation p.A585T 0.20 tolerated(0.24) benign(0.004) TCGA-L5-A8NM-01 19 49459465 49459465 G A BAX Missense_Mutation p.A82T 0.16 tolerated(0.58) benign(0.172) TCGA-L5-A8NM-01 19 49558688 49558688 C T CGB7 5'UTR 0.20 TCGA-L5-A8NM-01 19 49657665 49657665 C A HRC Missense_Mutation p.G277V 0.32 tolerated(0.06) probably_damaging(0.92) TCGA-L5-A8NM-01 19 49964929 49964929 G A ALDH16A1 Missense_Mutation p.A211T 0.09 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 19 50059641 50059641 C T NOSIP Missense_Mutation p.R256Q 0.30 deleterious(0.01) benign(0.216) TCGA-L5-A8NM-01 19 50097858 50097858 C A PRR12 Missense_Mutation p.P116H 0.09 probably_damaging(0.95) TCGA-L5-A8NM-01 19 50333113 50333113 C - MED25 Frame_Shift_Del p.P201Rfs*13 0.25 TCGA-L5-A8NM-01 19 50363527 50363527 G - PTOV1 Frame_Shift_Del p.*417Sfs*14 0.34 TCGA-L5-A8NM-01 19 50411478 50411478 C - NUP62 3'UTR 0.33 TCGA-L5-A8NM-01 19 51015803 51015803 C T ASPDH Missense_Mutation p.G156D 0.10 tolerated(0.06) possibly_damaging(0.548) TCGA-L5-A8NM-01 19 51020821 51020821 C A LRRC4B 3'UTR 0.34 TCGA-L5-A8NM-01 19 51410328 51410328 C - KLK4 Frame_Shift_Del p.L211* 0.11 TCGA-L5-A8NM-01 19 51885678 51885678 A - LIM2 Frame_Shift_Del p.S149Pfs*43 0.25 TCGA-L5-A8NM-01 19 52097515 52097515 C A AC018755.1 Silent p.A20A 0.10 TCGA-L5-A8NM-01 19 52327515 52327515 G T FPR3 Missense_Mutation p.G172W 0.12 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 19 52505112 52505112 T G ZNF615 Missense_Mutation p.E64D 0.12 deleterious(0.02) benign(0.001) TCGA-L5-A8NM-01 19 52888438 52888438 A - ZNF880 Frame_Shift_Del p.K537Nfs*60 0.12 TCGA-L5-A8NM-01 19 53391430 53391430 G A ZNF320 Missense_Mutation p.T31I 0.20 deleterious(0.02) possibly_damaging(0.882) TCGA-L5-A8NM-01 19 53418494 53418494 A T ZNF888 RNA 0.14 TCGA-L5-A8NM-01 19 53994005 53994005 A G ZNF813 Silent p.S173S 0.15 TCGA-L5-A8NM-01 19 54502908 54502908 G A CACNG6 Missense_Mutation p.V143M 0.31 tolerated(0.39) possibly_damaging(0.795) TCGA-L5-A8NM-01 19 54668189 54668189 C T TMC4 Silent p.T370T 0.33 TCGA-L5-A8NM-01 19 54778658 54778658 T A LILRB2 Missense_Mutation p.D559V 0.09 deleterious(0.01) benign(0.143) TCGA-L5-A8NM-01 19 54930394 54930394 G C TTYH1 Silent p.R73R 0.18 TCGA-L5-A8NM-01 19 55179121 55179121 G A LILRB4 Silent p.T359T 0.35 TCGA-L5-A8NM-01 19 55447775 55447775 G A NLRP7 Silent p.T718T 0.29 TCGA-L5-A8NM-01 19 55494830 55494830 C T NLRP2 Silent p.C588C 0.33 TCGA-L5-A8NM-01 19 55697597 55697597 C T PTPRH Missense_Mutation p.G925D 0.19 probably_damaging(0.999) TCGA-L5-A8NM-01 19 56132245 56132245 G A ZNF784 3'UTR 0.19 TCGA-L5-A8NM-01 19 56163825 56163825 T C CCDC106 Missense_Mutation p.Y186H 0.11 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 19 56538313 56538313 C T NLRP5 Silent p.H238H 0.28 TCGA-L5-A8NM-01 19 5679654 5679654 G - C19orf70 Frame_Shift_Del p.A51Pfs*39 0.24 TCGA-L5-A8NM-01 19 57035710 57035710 G A ZNF471 Missense_Mutation p.V92M 0.35 tolerated(0.16) benign(0.005) TCGA-L5-A8NM-01 19 57328136 57328136 G A PEG3 Silent p.G558G 0.16 TCGA-L5-A8NM-01 19 58018683 58018683 G T ZNF773 Missense_Mutation p.R407M 0.09 deleterious(0) probably_damaging(0.936) TCGA-L5-A8NM-01 19 58083744 58083744 C T ZNF416 Missense_Mutation p.V510I 0.28 tolerated(1) benign(0.012) TCGA-L5-A8NM-01 19 58117515 58117515 C T ZNF530 Nonsense_Mutation p.R208* 0.16 TCGA-L5-A8NM-01 19 58238904 58238904 G A ZNF671 5'UTR 0.14 TCGA-L5-A8NM-01 19 58291095 58291095 A G ZNF586 Silent p.K380K 0.16 TCGA-L5-A8NM-01 19 58867645 58867645 G A ZNF497 Missense_Mutation p.R453C 0.26 tolerated(0.05) probably_damaging(0.969) TCGA-L5-A8NM-01 19 58966635 58966635 C T ZNF324B Silent p.S108S 0.15 TCGA-L5-A8NM-01 19 6026217 6026218 - T RFX2 Frame_Shift_Ins p.S185Kfs*22 0.13 TCGA-L5-A8NM-01 19 6147615 6147615 A - ACSBG2 Frame_Shift_Del p.K77Sfs*5 0.12 TCGA-L5-A8NM-01 19 621241 621241 G A POLRMT Silent p.D819D 0.10 TCGA-L5-A8NM-01 19 7594070 7594072 CTT - MCOLN1 In_Frame_Del p.F408del 0.46 TCGA-L5-A8NM-01 19 7920932 7920932 A G EVI5L Missense_Mutation p.Q393R 0.21 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NM-01 19 7964449 7964449 C T LRRC8E Missense_Mutation p.R348W 0.12 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NM-01 19 8130615 8130615 G - FBN3 3'UTR 0.13 TCGA-L5-A8NM-01 19 8145954 8145954 G A FBN3 Silent p.V2462V 0.10 TCGA-L5-A8NM-01 19 8386227 8386227 G A NDUFA7 Missense_Mutation p.R6C 0.28 deleterious(0.01) probably_damaging(0.939) TCGA-L5-A8NM-01 19 8431167 8431167 C T ANGPTL4 Missense_Mutation p.P171S 0.29 tolerated(0.83) benign(0.065) TCGA-L5-A8NM-01 19 8503622 8503622 T G MARCH2 3'UTR 0.30 TCGA-L5-A8NM-01 19 9297112 9297112 T G OR7D2 Missense_Mutation p.S219A 0.24 deleterious_low_confidence(0.02) benign(0.068) TCGA-L5-A8NM-01 1 101705754 101705754 A - S1PR1 3'UTR 0.17 TCGA-L5-A8NM-01 1 101706941 101706941 T C S1PR1 3'UTR 0.12 TCGA-L5-A8NM-01 1 104297163 104297163 G A AMY1C Silent p.A307A 0.21 TCGA-L5-A8NM-01 1 108113843 108113843 A G VAV3 3'UTR 0.19 TCGA-L5-A8NM-01 1 109482717 109482717 A G CLCC1 Missense_Mutation p.Y282H 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 1 11008750 11008750 G A C1orf127 Missense_Mutation p.T481M 0.33 tolerated(0.11) probably_damaging(0.996) TCGA-L5-A8NM-01 1 110217522 110217522 G T GSTM2 3'UTR 0.11 TCGA-L5-A8NM-01 1 110889132 110889132 A - RBM15 3'UTR 0.24 TCGA-L5-A8NM-01 1 1117146 1117146 G T TTLL10 Missense_Mutation p.A261S 0.13 tolerated(0.31) benign(0.107) TCGA-L5-A8NM-01 1 111958968 111958968 A G OVGP1 Missense_Mutation p.L378S 0.20 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 1 113066875 113066875 T - ST7L 3'UTR 0.34 TCGA-L5-A8NM-01 1 114319836 114319836 G A RSBN1 Nonsense_Mutation p.R552* 0.12 TCGA-L5-A8NM-01 1 114362165 114362165 T - PTPN22 Intron 0.14 TCGA-L5-A8NM-01 1 114522093 114522093 G A OLFML3 5'UTR 0.34 TCGA-L5-A8NM-01 1 115419373 115419373 A - SYCP1 Frame_Shift_Del p.I250Sfs*12 0.23 TCGA-L5-A8NM-01 1 116236045 116236045 A G VANGL1 3'UTR 0.25 TCGA-L5-A8NM-01 1 116380789 116380789 G A NHLH2 Missense_Mutation p.R69C 0.30 deleterious(0) probably_damaging(0.973) TCGA-L5-A8NM-01 1 116926693 116926693 A - ATP1A1 Frame_Shift_Del p.K25Rfs*11 0.25 TCGA-L5-A8NM-01 1 11883833 11883833 G A CLCN6 Missense_Mutation p.V175I 0.10 deleterious(0) benign(0.36) TCGA-L5-A8NM-01 1 120437822 120437823 - A ADAM30 Frame_Shift_Ins p.K380* 0.11 TCGA-L5-A8NM-01 1 12062115 12062115 T A MFN2 Missense_Mutation p.V372D 0.29 deleterious(0) benign(0.132) TCGA-L5-A8NM-01 1 12195644 12195644 G T TNFRSF8 Splice_Site p.X437_splice 0.10 TCGA-L5-A8NM-01 1 1222275 1222275 C - SCNN1D Frame_Shift_Del p.F349Sfs*12 0.25 TCGA-L5-A8NM-01 1 12460264 12460264 G A VPS13D Silent p.T3887T 0.18 TCGA-L5-A8NM-01 1 1309775 1309775 C A AURKAIP1 Missense_Mutation p.G35W 0.38 tolerated(0.09) possibly_damaging(0.734) TCGA-L5-A8NM-01 1 1326208 1326208 C T CCNL2 Missense_Mutation p.V233M 0.11 tolerated(0.16) benign(0.421) TCGA-L5-A8NM-01 1 145075830 145075830 G T PDE4DIP Silent p.R11R 0.08 TCGA-L5-A8NM-01 1 145299885 145299886 AA - NBPF10 Frame_Shift_Del p.K312Mfs*20 0.12 TCGA-L5-A8NM-01 1 1453125 1453125 G A ATAD3A Silent p.R186R 0.40 TCGA-L5-A8NM-01 1 145585419 145585419 T C PIAS3 Missense_Mutation p.Y562H 0.12 deleterious_low_confidence(0.04) possibly_damaging(0.903) TCGA-L5-A8NM-01 1 149871915 149871915 C T BOLA1 Silent p.V101V 0.22 TCGA-L5-A8NM-01 1 149949403 149949403 A G OTUD7B Missense_Mutation p.S15P 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A8NM-01 1 150049819 150049819 G T VPS45 Missense_Mutation p.D217Y 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 1 150236993 150236995 GAA - CA14 In_Frame_Del p.K318del 0.22 TCGA-L5-A8NM-01 1 150266688 150266688 C T MRPS21 5'UTR 0.15 TCGA-L5-A8NM-01 1 150523419 150523419 G T AL356356.1 Missense_Mutation p.R116S 0.23 unknown(0) TCGA-L5-A8NM-01 1 150620043 150620043 C - GOLPH3L 3'UTR 0.25 TCGA-L5-A8NM-01 1 150936218 150936218 G A SETDB1 Splice_Site p.X1223_splice 0.19 TCGA-L5-A8NM-01 1 151106894 151106894 G - SEMA6C Frame_Shift_Del p.P581Lfs*202 0.17 TCGA-L5-A8NM-01 1 151149461 151149461 T A VPS72 Missense_Mutation p.T263S 0.17 tolerated(0.85) benign(0.001) TCGA-L5-A8NM-01 1 151261173 151261173 T C ZNF687 Missense_Mutation p.V762A 0.28 deleterious(0) benign(0.22) TCGA-L5-A8NM-01 1 151262391 151262391 G - ZNF687 Frame_Shift_Del p.P960Lfs*23 0.22 TCGA-L5-A8NM-01 1 151318680 151318680 C T RFX5 Splice_Site p.X39_splice 0.20 TCGA-L5-A8NM-01 1 152080543 152080543 C T TCHH Missense_Mutation p.R1717H 0.08 unknown(0) TCGA-L5-A8NM-01 1 152085240 152085241 - C TCHH Frame_Shift_Ins p.E152Rfs*5 0.09 TCGA-L5-A8NM-01 1 152882397 152882397 C - IVL Frame_Shift_Del p.P43Hfs*22 0.24 TCGA-L5-A8NM-01 1 153274898 153274898 C T PGLYRP3 Missense_Mutation p.D239N 0.14 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NM-01 1 153279708 153279708 C - PGLYRP3 Frame_Shift_Del p.A31Qfs*10 0.22 TCGA-L5-A8NM-01 1 153617966 153617966 T - CHTOP 3'UTR 0.43 TCGA-L5-A8NM-01 1 153954703 153954703 G A RAB13 Intron 0.07 TCGA-L5-A8NM-01 1 154461600 154461600 G A SHE Silent p.N317N 0.19 TCGA-L5-A8NM-01 1 154744782 154744782 A G KCNN3 Missense_Mutation p.C373R 0.25 deleterious(0) possibly_damaging(0.62) TCGA-L5-A8NM-01 1 154842106 154842106 G - KCNN3 Frame_Shift_Del p.P112Lfs*64 0.13 TCGA-L5-A8NM-01 1 155059987 155059987 A - EFNA3 3'UTR 0.43 TCGA-L5-A8NM-01 1 155156330 155156330 G A TRIM46 Silent p.S648S 0.22 TCGA-L5-A8NM-01 1 155167348 155167348 C T THBS3 Missense_Mutation p.G802D 0.16 deleterious(0) benign(0.158) TCGA-L5-A8NM-01 1 155270775 155270775 C A PKLR Intron 0.22 TCGA-L5-A8NM-01 1 155583470 155583470 C T MSTO1 Missense_Mutation p.P471S 0.21 deleterious(0.02) probably_damaging(0.98) TCGA-L5-A8NM-01 1 155753824 155753826 CTC - GON4L In_Frame_Del p.E615del 0.10 TCGA-L5-A8NM-01 1 155854809 155854810 - A SYT11 3'UTR 0.10 TCGA-L5-A8NM-01 1 156571204 156571204 C A GPATCH4 Missense_Mutation p.D10Y 0.10 deleterious_low_confidence(0.04) benign(0.114) TCGA-L5-A8NM-01 1 156640743 156640743 G T NES Silent p.S1079S 0.16 TCGA-L5-A8NM-01 1 156641686 156641686 C T NES Missense_Mutation p.R765Q 0.12 tolerated(0.12) benign(0.001) TCGA-L5-A8NM-01 1 156694023 156694023 G - ISG20L2 Frame_Shift_Del p.L289Sfs*15 0.37 TCGA-L5-A8NM-01 1 156814956 156814956 G A INSRR Silent p.Y783Y 0.31 TCGA-L5-A8NM-01 1 15766805 15766805 G A CTRC Missense_Mutation p.C17Y 0.33 deleterious(0.01) probably_damaging(0.95) TCGA-L5-A8NM-01 1 158152021 158152021 G A CD1D Silent p.V176V 0.21 TCGA-L5-A8NM-01 1 158577072 158577073 - C OR10Z1 Frame_Shift_Ins p.L284Pfs*3 0.29 TCGA-L5-A8NM-01 1 158632566 158632566 A T SPTA1 Missense_Mutation p.L797Q 0.10 tolerated(1) benign(0.001) TCGA-L5-A8NM-01 1 158669503 158669503 A - OR6K2 Frame_Shift_Del p.S314Pfs*2 0.14 TCGA-L5-A8NM-01 1 160209942 160209942 T C DCAF8 Missense_Mutation p.N90D 0.13 tolerated(0.58) benign(0.002) TCGA-L5-A8NM-01 1 160394994 160394994 C T VANGL2 Silent p.S464S 0.25 TCGA-L5-A8NM-01 1 160849201 160849202 - C ITLN1 Frame_Shift_Ins p.E230Gfs*13 0.19 TCGA-L5-A8NM-01 1 161091639 161091639 A T DEDD 3'UTR 0.18 TCGA-L5-A8NM-01 1 161137885 161137886 CA - PPOX Frame_Shift_Del p.H147Qfs*10 0.11 TCGA-L5-A8NM-01 1 161279763 161279763 G - MPZ 5'Flank 0.21 TCGA-L5-A8NM-01 1 16260997 16260997 G T SPEN Silent p.T2754T 0.34 TCGA-L5-A8NM-01 1 16266630 16266630 A - SPEN 3'UTR 0.09 TCGA-L5-A8NM-01 1 16451243 16451243 G T EPHA2 3'UTR 0.14 TCGA-L5-A8NM-01 1 16462258 16462258 G - EPHA2 Frame_Shift_Del p.K441Rfs*2 0.13 TCGA-L5-A8NM-01 1 165550908 165550908 C T RP11-280O1.2 RNA 0.17 TCGA-L5-A8NM-01 1 167408611 167408611 C T CD247 Silent p.A63A 0.24 TCGA-L5-A8NM-01 1 168034884 168034884 C T DCAF6 Silent p.G832G 0.30 TCGA-L5-A8NM-01 1 1687725 1687725 G A NADK Missense_Mutation p.T331M 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 1 169824995 169824995 C T SCYL3 Silent p.T472T 0.13 TCGA-L5-A8NM-01 1 171535520 171535520 G A PRRC2C Missense_Mutation p.R2087Q 0.20 probably_damaging(0.993) TCGA-L5-A8NM-01 1 171678847 171678847 T A VAMP4 Missense_Mutation p.R101S 0.11 tolerated(0.45) possibly_damaging(0.643) TCGA-L5-A8NM-01 1 171810847 171810847 G T DNM3 Missense_Mutation p.Q17H 0.19 deleterious(0.02) probably_damaging(0.991) TCGA-L5-A8NM-01 1 172580461 172580461 T - SUCO 3'UTR 0.26 TCGA-L5-A8NM-01 1 17265554 17265554 C T CROCC Nonsense_Mutation p.R509* 0.13 TCGA-L5-A8NM-01 1 17287269 17287269 G A CROCC Missense_Mutation p.R1350Q 0.22 probably_damaging(0.987) TCGA-L5-A8NM-01 1 17296892 17296892 C T CROCC Missense_Mutation p.R1866C 0.17 possibly_damaging(0.835) TCGA-L5-A8NM-01 1 17316221 17316221 C A ATP13A2 Missense_Mutation p.Q858H 0.16 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 1 174417673 174417673 G A GPR52 Missense_Mutation p.A142T 0.22 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NM-01 1 174517133 174517133 G A RABGAP1L Intron 0.07 TCGA-L5-A8NM-01 1 176833400 176833400 A G ASTN1 3'UTR 0.17 TCGA-L5-A8NM-01 1 17749315 17749315 G T RCC2 Missense_Mutation p.Q181K 0.23 deleterious(0) possibly_damaging(0.671) TCGA-L5-A8NM-01 1 178062370 178062370 C T RASAL2 5'Flank 0.10 TCGA-L5-A8NM-01 1 180063462 180063462 A - CEP350 Frame_Shift_Del p.K2743Sfs*12 0.24 TCGA-L5-A8NM-01 1 18152879 18152879 C A ACTL8 Silent p.S322S 0.21 TCGA-L5-A8NM-01 1 181765945 181765945 G A CACNA1E Missense_Mutation p.R2117H 0.19 tolerated(0.2) benign(0) TCGA-L5-A8NM-01 1 182025992 182025992 G A ZNF648 Missense_Mutation p.T385M 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NM-01 1 182852698 182852698 C - DHX9 Frame_Shift_Del p.L1065Cfs*20 0.25 TCGA-L5-A8NM-01 1 182909500 182909500 T A SHCBP1L Missense_Mutation p.D245V 0.12 tolerated(0.35) benign(0.023) TCGA-L5-A8NM-01 1 183261950 183261950 C G NMNAT2 Missense_Mutation p.A73P 0.26 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 1 184006822 184006822 T A COLGALT2 5'UTR 0.16 TCGA-L5-A8NM-01 1 185069848 185069848 C T RNF2 3'UTR 0.15 TCGA-L5-A8NM-01 1 185891603 185891604 - A HMCN1 Frame_Shift_Ins p.T334Nfs*25 0.20 TCGA-L5-A8NM-01 1 185951461 185951461 C A HMCN1 Silent p.P910P 0.15 TCGA-L5-A8NM-01 1 186159736 186159736 T A HMCN1 3'UTR 0.38 TCGA-L5-A8NM-01 1 186276771 186276771 C T PRG4 Silent p.P640P 0.30 TCGA-L5-A8NM-01 1 186312523 186312523 C A TPR Nonsense_Mutation p.E1229* 0.17 TCGA-L5-A8NM-01 1 19585041 19585041 C T MRTO4 Silent p.R188R 0.37 TCGA-L5-A8NM-01 1 197021828 197021828 T C F13B Silent p.P497P 0.12 TCGA-L5-A8NM-01 1 197032137 197032137 A G F13B Missense_Mutation p.Y39H 0.19 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 1 197127564 197127564 A G ZBTB41 3'UTR 0.20 TCGA-L5-A8NM-01 1 197901190 197901190 A - LHX9 3'Flank 0.09 TCGA-L5-A8NM-01 1 198697519 198697519 T C PTPRC Missense_Mutation p.S591P 0.29 deleterious(0) benign(0.078) TCGA-L5-A8NM-01 1 19992533 19992533 G A HTR6 Missense_Mutation p.R96H 0.11 tolerated(0.14) benign(0.035) TCGA-L5-A8NM-01 1 200524515 200524515 G A KIF14 Missense_Mutation p.S1474L 0.27 tolerated(0.2) benign(0) TCGA-L5-A8NM-01 1 200709046 200709046 A - CAMSAP2 Frame_Shift_Del p.I32Sfs*72 0.15 TCGA-L5-A8NM-01 1 200829136 200829136 C T CAMSAP2 3'UTR 0.11 TCGA-L5-A8NM-01 1 200942531 200942531 G T KIF21B 3'Flank 0.11 TCGA-L5-A8NM-01 1 202822385 202822385 G - RP11-480I12.5 RNA 0.19 TCGA-L5-A8NM-01 1 203134456 203134456 G A ADORA1 Missense_Mutation p.V137M 0.28 deleterious(0) possibly_damaging(0.482) TCGA-L5-A8NM-01 1 203137797 203137797 G A MYBPH Missense_Mutation p.A475V 0.14 deleterious(0.04) benign(0.098) TCGA-L5-A8NM-01 1 203141132 203141132 T C MYBPH Missense_Mutation p.Q182R 0.08 deleterious(0.01) benign(0.18) TCGA-L5-A8NM-01 1 203276682 203276682 T - BTG2 3'UTR 0.23 TCGA-L5-A8NM-01 1 203710948 203710948 A - ATP2B4 3'UTR 0.25 TCGA-L5-A8NM-01 1 203771566 203771566 G A ZC3H11A 5'UTR 0.30 TCGA-L5-A8NM-01 1 204228411 204228411 C - PLEKHA6 Frame_Shift_Del p.V328Yfs*172 0.29 TCGA-L5-A8NM-01 1 205211075 205211075 G A TMCC2 Missense_Mutation p.R217H 0.50 deleterious(0) benign(0.021) TCGA-L5-A8NM-01 1 205499346 205499346 C - CDK18 Intron 0.14 TCGA-L5-A8NM-01 1 207112680 207112680 G A PIGR Nonsense_Mutation p.Q58* 0.39 TCGA-L5-A8NM-01 1 207221438 207221438 A - YOD1 3'UTR 0.18 TCGA-L5-A8NM-01 1 208062085 208062085 C T CD34 Missense_Mutation p.G305D 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 1 210016856 210016856 G A DIEXF Silent p.T614T 0.26 TCGA-L5-A8NM-01 1 21069688 21069688 A - HP1BP3 3'UTR 0.20 TCGA-L5-A8NM-01 1 2116391 2116391 G A PRKCZ Silent p.E574E 0.14 TCGA-L5-A8NM-01 1 214169975 214169975 T - PROX1 Frame_Shift_Del p.F34Lfs*12 0.15 TCGA-L5-A8NM-01 1 216373117 216373117 C A USH2A Missense_Mutation p.Q1221H 0.17 probably_damaging(0.95) TCGA-L5-A8NM-01 1 21894731 21894731 G A ALPL Silent p.P261P 0.23 TCGA-L5-A8NM-01 1 22161279 22161279 C T HSPG2 Missense_Mutation p.G3538D 0.12 possibly_damaging(0.794) TCGA-L5-A8NM-01 1 22205107 22205107 C T HSPG2 Missense_Mutation p.A841T 0.36 benign(0.066) TCGA-L5-A8NM-01 1 2238587 2238587 G A SKI 3'UTR 0.24 TCGA-L5-A8NM-01 1 22418892 22418893 - T CDC42 3'UTR 0.30 TCGA-L5-A8NM-01 1 224574195 224574195 A T WDR26 3'UTR 0.16 TCGA-L5-A8NM-01 1 225267204 225267204 C T DNAH14 Missense_Mutation p.A841V 0.18 tolerated(0.25) possibly_damaging(0.483) TCGA-L5-A8NM-01 1 225685144 225685144 G A ENAH 3'UTR 0.19 TCGA-L5-A8NM-01 1 226040372 226040372 C T TMEM63A Silent p.A632A 0.10 TCGA-L5-A8NM-01 1 226419890 226419890 A - LIN9 3'UTR 0.19 TCGA-L5-A8NM-01 1 227078994 227078994 C T PSEN2 Missense_Mutation p.T301M 0.20 tolerated(0.27) benign(0.104) TCGA-L5-A8NM-01 1 227177657 227177657 T - CDC42BPA 3'UTR 0.21 TCGA-L5-A8NM-01 1 228109316 228109316 A G WNT9A Missense_Mutation p.V334A 0.24 tolerated(0.12) benign(0.013) TCGA-L5-A8NM-01 1 228465471 228465471 C T OBSCN Silent p.L2686L 0.23 TCGA-L5-A8NM-01 1 22915633 22915633 G A EPHA8 Missense_Mutation p.G417S 0.14 deleterious(0.01) benign(0.029) TCGA-L5-A8NM-01 1 22973962 22973962 G A C1QC Missense_Mutation p.A142T 0.20 tolerated(0.55) benign(0.003) TCGA-L5-A8NM-01 1 23241044 23241044 T - EPHB2 3'Flank 0.12 TCGA-L5-A8NM-01 1 232607232 232607232 C T SIPA1L2 Missense_Mutation p.V710I 0.32 tolerated(0.62) benign(0.03) TCGA-L5-A8NM-01 1 233388513 233388513 T - PCNXL2 Frame_Shift_Del p.K619Rfs*52 0.21 TCGA-L5-A8NM-01 1 2336428 2336428 C - PEX10 3'UTR 0.14 TCGA-L5-A8NM-01 1 23418182 23418182 G A LUZP1 Missense_Mutation p.A858V 0.20 tolerated(0.07) benign(0.029) TCGA-L5-A8NM-01 1 235345232 235345233 - T ARID4B Frame_Shift_Ins p.T1001Nfs*6 0.25 TCGA-L5-A8NM-01 1 235491502 235491502 C - ARID4B 5'UTR 0.11 TCGA-L5-A8NM-01 1 236721822 236721822 C T HEATR1 Missense_Mutation p.R1640H 0.09 tolerated(0.48) benign(0.001) TCGA-L5-A8NM-01 1 236972027 236972027 T G MTR Silent p.S121S 0.12 TCGA-L5-A8NM-01 1 236972037 236972037 G A MTR Missense_Mutation p.A125T 0.12 deleterious(0.04) probably_damaging(0.99) TCGA-L5-A8NM-01 1 237058730 237058730 G A MTR Missense_Mutation p.V1160I 0.22 tolerated(0.11) benign(0) TCGA-L5-A8NM-01 1 23845519 23845519 C T E2F2 Missense_Mutation p.D281N 0.18 deleterious(0.04) possibly_damaging(0.595) TCGA-L5-A8NM-01 1 240256444 240256444 G A FMN2 Silent p.T345T 0.27 TCGA-L5-A8NM-01 1 241920704 241920704 T C WDR64 Silent p.A620A 0.14 TCGA-L5-A8NM-01 1 243354507 243354507 G T CEP170 Missense_Mutation p.H307Q 0.15 tolerated(0.37) benign(0.067) TCGA-L5-A8NM-01 1 24433677 24433677 C A MYOM3 Missense_Mutation p.E96D 0.22 tolerated(0.11) benign(0.08) TCGA-L5-A8NM-01 1 244735907 244735908 - T C1orf101 Frame_Shift_Ins p.Y597Lfs*40 0.23 TCGA-L5-A8NM-01 1 245005347 245005347 T - COX20 Frame_Shift_Del p.L50Cfs*14 0.10 TCGA-L5-A8NM-01 1 245016488 245016488 G - HNRNPU 3'Flank 0.15 TCGA-L5-A8NM-01 1 2457955 2457955 G - PANK4 Frame_Shift_Del p.D25Tfs*17 0.10 TCGA-L5-A8NM-01 1 247002901 247002901 T G AHCTF1 3'UTR 0.15 TCGA-L5-A8NM-01 1 247163304 247163304 G A ZNF695 Missense_Mutation p.R26W 0.21 deleterious(0.05) benign(0.003) TCGA-L5-A8NM-01 1 248263222 248263222 C T OR2L13 Missense_Mutation p.A182V 0.19 deleterious(0.02) probably_damaging(0.933) TCGA-L5-A8NM-01 1 25893406 25893406 G A LDLRAP1 Missense_Mutation p.A284T 0.22 tolerated_low_confidence(0.13) benign(0.039) TCGA-L5-A8NM-01 1 26136236 26136236 A G SEPN1 Missense_Mutation p.Q312R 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NM-01 1 27177050 27177050 C T ZDHHC18 Silent p.R262R 0.41 TCGA-L5-A8NM-01 1 27429000 27429000 C T SLC9A1 Missense_Mutation p.E566K 0.25 deleterious(0.02) possibly_damaging(0.838) TCGA-L5-A8NM-01 1 29189683 29189683 C A OPRD1 Missense_Mutation p.P336H 0.15 tolerated(0.54) benign(0.003) TCGA-L5-A8NM-01 1 29447700 29447700 C T TMEM200B Missense_Mutation p.R214H 0.33 deleterious(0.04) benign(0.055) TCGA-L5-A8NM-01 1 31351475 31351475 G A SDC3 Missense_Mutation p.S84L 0.29 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NM-01 1 31405576 31405576 T - PUM1 3'Flank 0.12 TCGA-L5-A8NM-01 1 31405690 31405696 TAAAGCT AAAGC PUM1 3'UTR 0.12 TCGA-L5-A8NM-01 1 32052497 32052497 C T TINAGL1 Missense_Mutation p.R441C 0.09 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 1 32207741 32207741 G A BAI2 Missense_Mutation p.R444W 0.36 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 1 32508537 32508537 A - KHDRBS1 3'UTR 0.34 TCGA-L5-A8NM-01 1 32508606 32508606 G T KHDRBS1 3'UTR 0.16 TCGA-L5-A8NM-01 1 32509353 32509353 G A KHDRBS1 3'UTR 0.17 TCGA-L5-A8NM-01 1 32740999 32740999 C T LCK Missense_Mutation p.A119V 0.36 tolerated(1) benign(0) TCGA-L5-A8NM-01 1 32830965 32830965 A - BSDC1 3'Flank 0.30 TCGA-L5-A8NM-01 1 33060715 33060715 C T ZBTB8A Missense_Mutation p.A295V 0.16 probably_damaging(0.998) TCGA-L5-A8NM-01 1 33134598 33134598 C T RBBP4 Missense_Mutation p.A209V 0.27 deleterious(0.02) benign(0.022) TCGA-L5-A8NM-01 1 33359509 33359509 C A HPCA 3'UTR 0.15 TCGA-L5-A8NM-01 1 33549639 33549639 C T ADC Missense_Mutation p.R64W 0.30 deleterious(0) possibly_damaging(0.79) TCGA-L5-A8NM-01 1 33960901 33960901 C T ZSCAN20 Missense_Mutation p.P986L 0.16 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 1 3410403 3410404 - C MEGF6 Frame_Shift_Ins p.A1440Gfs*4 0.41 TCGA-L5-A8NM-01 1 36026864 36026864 C T NCDN Missense_Mutation p.A371V 0.22 deleterious(0.01) probably_damaging(0.91) TCGA-L5-A8NM-01 1 36805818 36805818 G A STK40 3'UTR 0.19 TCGA-L5-A8NM-01 1 3742955 3742955 G A CEP104 Missense_Mutation p.P745L 0.22 tolerated(0.06) benign(0.014) TCGA-L5-A8NM-01 1 39798688 39798688 C T MACF1 Intron 0.29 TCGA-L5-A8NM-01 1 40092236 40092236 C T HEYL Silent p.A310A 0.26 TCGA-L5-A8NM-01 1 40706337 40706338 - A RLF 3'UTR 0.27 TCGA-L5-A8NM-01 1 42050840 42050840 C T HIVEP3 5'UTR 0.20 TCGA-L5-A8NM-01 1 43166567 43166567 A G YBX1 Missense_Mutation p.N286D 0.12 deleterious(0.04) possibly_damaging(0.757) TCGA-L5-A8NM-01 1 43315260 43315260 T C ZNF691 5'UTR 0.12 TCGA-L5-A8NM-01 1 43770797 43770797 C T TIE1 Missense_Mutation p.R112W 0.12 deleterious(0) possibly_damaging(0.487) TCGA-L5-A8NM-01 1 43828847 43828847 A G CDC20 3'UTR 0.12 TCGA-L5-A8NM-01 1 44468596 44468596 G T SLC6A9 Missense_Mutation p.L291I 0.25 tolerated(0.51) probably_damaging(0.999) TCGA-L5-A8NM-01 1 44877906 44877906 G A RNF220 Missense_Mutation p.R46Q 0.16 deleterious(0.01) probably_damaging(0.992) TCGA-L5-A8NM-01 1 45797165 45797165 C T MUTYH Missense_Mutation p.R414H 0.32 tolerated(0.19) benign(0.003) TCGA-L5-A8NM-01 1 46093288 46093288 T A GPBP1L1 3'UTR 0.10 TCGA-L5-A8NM-01 1 46808338 46808338 C A NSUN4 Intron 0.08 TCGA-L5-A8NM-01 1 47143861 47143861 A - EFCAB14 3'UTR 0.11 TCGA-L5-A8NM-01 1 52826167 52826167 G A CC2D1B Nonsense_Mutation p.R178* 0.07 TCGA-L5-A8NM-01 1 52937633 52937633 T - ZCCHC11 Frame_Shift_Del p.R957Dfs*20 0.12 TCGA-L5-A8NM-01 1 52940535 52940535 A G ZCCHC11 Missense_Mutation p.V899A 0.48 tolerated(0.29) benign(0.168) TCGA-L5-A8NM-01 1 53068089 53068089 C T GPX7 Missense_Mutation p.A3V 0.18 tolerated(0.64) unknown(0) TCGA-L5-A8NM-01 1 53073995 53073995 G T GPX7 Missense_Mutation p.K154N 0.12 tolerated(0.09) possibly_damaging(0.777) TCGA-L5-A8NM-01 1 53559200 53559200 C - SLC1A7 Frame_Shift_Del p.A244Pfs*15 0.08 TCGA-L5-A8NM-01 1 54670828 54670828 C T MRPL37 Missense_Mutation p.R162C 0.26 tolerated(0.13) benign(0.428) TCGA-L5-A8NM-01 1 55118660 55118660 C - MROH7 Frame_Shift_Del p.S23Pfs*7 0.20 TCGA-L5-A8NM-01 1 55136582 55136582 G T MROH7 Missense_Mutation p.A527S 0.26 tolerated(0.42) benign(0.026) TCGA-L5-A8NM-01 1 55614173 55614173 C T USP24 Missense_Mutation p.R644H 0.14 tolerated(0.08) benign(0.195) TCGA-L5-A8NM-01 1 56961278 56961278 C T PPAP2B 3'UTR 0.12 TCGA-L5-A8NM-01 1 57538024 57538024 G A DAB1 Missense_Mutation p.R124W 0.22 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 1 6150469 6150469 C T KCNAB2 Nonsense_Mutation p.R179* 0.13 TCGA-L5-A8NM-01 1 6257785 6257785 T - RPL22 Frame_Shift_Del p.K15Rfs*5 0.38 TCGA-L5-A8NM-01 1 62739570 62739570 G A KANK4 Silent p.N402N 0.10 TCGA-L5-A8NM-01 1 6504567 6504567 G A ESPN Silent p.R339R 0.14 TCGA-L5-A8NM-01 1 65296647 65296647 A - RAVER2 Frame_Shift_Del p.K674Rfs*15 0.18 TCGA-L5-A8NM-01 1 6649032 6649032 G A ZBTB48 Silent p.R609R 0.10 TCGA-L5-A8NM-01 1 66723336 66723336 C T PDE4B Silent p.G161G 0.24 TCGA-L5-A8NM-01 1 68896746 68896746 A G RPE65 Splice_Site p.X484_splice 0.14 TCGA-L5-A8NM-01 1 68947781 68947781 T G DEPDC1 Missense_Mutation p.E570D 0.17 tolerated(0.33) benign(0.233) TCGA-L5-A8NM-01 1 70225992 70225992 G A LRRC7 Silent p.Q35Q 0.40 TCGA-L5-A8NM-01 1 70697708 70697708 T - SRSF11 Intron 0.35 TCGA-L5-A8NM-01 1 74670324 74670324 C T FPGT Missense_Mutation p.T198M 0.42 tolerated(0.08) benign(0.082) TCGA-L5-A8NM-01 1 7723713 7723714 - C CAMTA1 Frame_Shift_Ins p.D371Gfs*37 0.10 TCGA-L5-A8NM-01 1 78207076 78207076 A G USP33 Silent p.L71L 0.32 TCGA-L5-A8NM-01 1 78354426 78354426 G A NEXN 5'UTR 0.18 TCGA-L5-A8NM-01 1 7887598 7887598 C T PER3 Missense_Mutation p.S862L 0.29 tolerated(0.16) possibly_damaging(0.602) TCGA-L5-A8NM-01 1 8555155 8555155 G A RERE Missense_Mutation p.R358W 0.17 probably_damaging(0.995) TCGA-L5-A8NM-01 1 89301253 89301253 T A PKN2 3'UTR 0.11 TCGA-L5-A8NM-01 1 89449530 89449530 C T RBMXL1 5'UTR 0.15 TCGA-L5-A8NM-01 1 89630424 89630424 T A GBP7 Missense_Mutation p.D103V 0.12 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NM-01 1 90400757 90400757 A G LRRC8D Silent p.S710S 0.12 TCGA-L5-A8NM-01 1 90401214 90401214 A T LRRC8D 3'UTR 0.22 TCGA-L5-A8NM-01 1 90484280 90484280 C T ZNF326 Missense_Mutation p.R371C 0.31 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NM-01 1 91381802 91381802 A - ZNF644 3'UTR 0.43 TCGA-L5-A8NM-01 1 915565 915565 G A C1orf170 Missense_Mutation p.T188M 0.19 tolerated(0.06) possibly_damaging(0.706) TCGA-L5-A8NM-01 1 9165716 9165716 C T GPR157 Silent p.R207R 0.17 TCGA-L5-A8NM-01 1 92442915 92442915 G A BRDT Missense_Mutation p.V312I 0.17 tolerated(1) benign(0) TCGA-L5-A8NM-01 1 92642744 92642744 C T KIAA1107 Missense_Mutation p.A227V 0.16 tolerated(0.19) possibly_damaging(0.682) TCGA-L5-A8NM-01 1 92977686 92977686 A G EVI5 3'UTR 0.20 TCGA-L5-A8NM-01 1 93159366 93159366 T - EVI5 Frame_Shift_Del p.M408* 0.26 TCGA-L5-A8NM-01 1 94337659 94337659 T - DNTTIP2 Frame_Shift_Del p.N679Mfs*126 0.12 TCGA-L5-A8NM-01 1 9780259 9780259 G A PIK3CD Missense_Mutation p.E477K 0.15 tolerated(0.4) benign(0.075) TCGA-L5-A8NM-01 1 98060679 98060679 C T DPYD Silent p.T298T 0.12 TCGA-L5-A8NM-01 20 10287898 10287898 A G SNAP25 3'UTR 0.24 TCGA-L5-A8NM-01 20 10619648 10619648 A G JAG1 3'UTR 0.14 TCGA-L5-A8NM-01 20 17434447 17434447 G T PCSK2 Missense_Mutation p.D316Y 0.09 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 20 17641107 17641107 C A RRBP1 Nonsense_Mutation p.G16* 0.08 TCGA-L5-A8NM-01 20 17705764 17705764 G A BANF2 Missense_Mutation p.A39T 0.15 deleterious(0) probably_damaging(0.977) TCGA-L5-A8NM-01 20 19702500 19702500 C T SLC24A3 3'UTR 0.19 TCGA-L5-A8NM-01 20 2125464 2125464 G A STK35 3'UTR 0.19 TCGA-L5-A8NM-01 20 21687474 21687474 G A PAX1 Missense_Mutation p.A229T 0.16 tolerated(0.08) benign(0.009) TCGA-L5-A8NM-01 20 23064944 23064944 G A CD93 Missense_Mutation p.S629F 0.30 deleterious(0) possibly_damaging(0.907) TCGA-L5-A8NM-01 20 2312875 2312875 G A TGM3 Missense_Mutation p.A521T 0.18 deleterious(0.03) probably_damaging(1) TCGA-L5-A8NM-01 20 2621828 2621828 C T TMC2 Missense_Mutation p.A851V 0.10 tolerated(0.12) benign(0.004) TCGA-L5-A8NM-01 20 2637629 2637629 A - NOP56 Intron 0.10 TCGA-L5-A8NM-01 20 2637737 2637737 C T NOP56 Missense_Mutation p.A431V 0.20 tolerated(0.35) possibly_damaging(0.499) TCGA-L5-A8NM-01 20 3001962 3001962 G A PTPRA Missense_Mutation p.C350Y 0.11 deleterious(0) probably_damaging(0.94) TCGA-L5-A8NM-01 20 30072036 30072036 G A REM1 Missense_Mutation p.E234K 0.43 deleterious(0.01) possibly_damaging(0.856) TCGA-L5-A8NM-01 20 30784466 30784466 G A PLAGL2 Missense_Mutation p.P427L 0.13 deleterious(0.01) benign(0.134) TCGA-L5-A8NM-01 20 3102854 3102854 G A UBOX5 Missense_Mutation p.A144V 0.23 tolerated(0.34) benign(0.002) TCGA-L5-A8NM-01 20 31238590 31238590 G - C20orf203 RNA 0.16 TCGA-L5-A8NM-01 20 31424518 31424518 G A MAPRE1 Missense_Mutation p.D116N 0.21 deleterious(0.01) possibly_damaging(0.794) TCGA-L5-A8NM-01 20 33096168 33096168 C T ITCH 3'Flank 0.25 TCGA-L5-A8NM-01 20 33879905 33879905 C T FAM83C Missense_Mutation p.R68Q 0.10 tolerated(0.08) benign(0.223) TCGA-L5-A8NM-01 20 34041840 34041840 G A GDF5 Intron 0.12 TCGA-L5-A8NM-01 20 35176560 35176560 C T MYL9 Missense_Mutation p.R104C 0.08 tolerated(0.05) benign(0.144) TCGA-L5-A8NM-01 20 3526487 3526487 T - ATRN Frame_Shift_Del p.F231Lfs*8 0.11 TCGA-L5-A8NM-01 20 35399448 35399448 T - DSN1 Frame_Shift_Del p.G63Efs*39 0.20 TCGA-L5-A8NM-01 20 3557636 3557636 C T ATRN Missense_Mutation p.A782V 0.18 deleterious(0.02) benign(0.206) TCGA-L5-A8NM-01 20 35689630 35689630 A G RBL1 Missense_Mutation p.Y376H 0.15 deleterious(0.01) probably_damaging(0.977) TCGA-L5-A8NM-01 20 36627613 36627613 G - TTI1 Frame_Shift_Del p.L924Wfs*37 0.14 TCGA-L5-A8NM-01 20 3734433 3734433 C A C20orf27 3'UTR 0.33 TCGA-L5-A8NM-01 20 37647465 37647465 G A DHX35 Missense_Mutation p.R474H 0.28 tolerated(0.09) benign(0.003) TCGA-L5-A8NM-01 20 3764935 3764935 C - CENPB 3'UTR 0.23 TCGA-L5-A8NM-01 20 39752865 39752865 A - TOP1 3'UTR 0.15 TCGA-L5-A8NM-01 20 39981291 39981291 A C LPIN3 Missense_Mutation p.N470T 0.22 deleterious(0) probably_damaging(0.928) TCGA-L5-A8NM-01 20 39986087 39986087 T C LPIN3 Missense_Mutation p.L680P 0.29 tolerated(0.11) possibly_damaging(0.566) TCGA-L5-A8NM-01 20 39989255 39989255 C T EMILIN3 3'UTR 0.10 TCGA-L5-A8NM-01 20 40052243 40052243 G A CHD6 Missense_Mutation p.R1482C 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 20 416262 416262 C T TBC1D20 3'UTR 0.18 TCGA-L5-A8NM-01 20 418551 418551 A - TBC1D20 3'UTR 0.12 TCGA-L5-A8NM-01 20 4201345 4201345 T - ADRA1D 3'UTR 0.25 TCGA-L5-A8NM-01 20 42788584 42788584 G A JPH2 Silent p.A281A 0.26 TCGA-L5-A8NM-01 20 42907925 42907926 - A GDAP1L1 Frame_Shift_Ins p.Y366Ifs*12 0.24 TCGA-L5-A8NM-01 20 43723597 43723597 T C KCNS1 Missense_Mutation p.T499A 0.21 tolerated(0.45) benign(0.002) TCGA-L5-A8NM-01 20 43926824 43926824 C T MATN4 Missense_Mutation p.R471H 0.43 probably_damaging(0.93) TCGA-L5-A8NM-01 20 43940969 43940969 C A RBPJL Missense_Mutation p.H185N 0.15 tolerated(0.44) benign(0.021) TCGA-L5-A8NM-01 20 44588005 44588005 G A ZNF335 Silent p.H696H 0.31 TCGA-L5-A8NM-01 20 44640819 44640819 C T MMP9 Silent p.C347C 0.26 TCGA-L5-A8NM-01 20 44688285 44688285 C A SLC12A5 3'Flank 0.16 TCGA-L5-A8NM-01 20 464342 464342 T - CSNK2A1 3'UTR 0.14 TCGA-L5-A8NM-01 20 48604987 48604987 C A SNAI1 3'UTR 0.32 TCGA-L5-A8NM-01 20 49127042 49127042 C T PTPN1 5'UTR 0.11 TCGA-L5-A8NM-01 20 50139933 50139933 C T NFATC2 Missense_Mutation p.V283M 0.14 deleterious(0.02) benign(0.207) TCGA-L5-A8NM-01 20 50287773 50287773 C T ATP9A Missense_Mutation p.G354D 0.13 deleterious(0) probably_damaging(0.97) TCGA-L5-A8NM-01 20 52188261 52188261 T - ZNF217 Intron 0.20 TCGA-L5-A8NM-01 20 56090790 56090790 C T CTCFL Missense_Mutation p.R387H 0.27 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 20 58482417 58482417 A G SYCP2 Splice_Site p.X345_splice 0.23 TCGA-L5-A8NM-01 20 58533754 58533754 G A CDH26 5'UTR 0.17 TCGA-L5-A8NM-01 20 5953318 5953318 A C MCM8 Intron 0.33 TCGA-L5-A8NM-01 20 60892021 60892021 C T LAMA5 Missense_Mutation p.A2524T 0.17 benign(0.025) TCGA-L5-A8NM-01 20 60911396 60911396 G A LAMA5 Missense_Mutation p.R775C 0.32 probably_damaging(0.943) TCGA-L5-A8NM-01 20 61468612 61468612 C A COL9A3 Missense_Mutation p.P594H 0.29 deleterious(0.03) probably_damaging(1) TCGA-L5-A8NM-01 20 61538508 61538508 G A DIDO1 Silent p.C455C 0.16 TCGA-L5-A8NM-01 20 62194213 62194213 G A HELZ2 Missense_Mutation p.R1988C 0.17 tolerated(0.27) benign(0) TCGA-L5-A8NM-01 20 62271454 62271454 T C STMN3 3'UTR 0.14 TCGA-L5-A8NM-01 20 62563770 62563770 C - DNAJC5 3'UTR 0.11 TCGA-L5-A8NM-01 20 62871697 62871697 G A MYT1 Missense_Mutation p.D1088N 0.13 possibly_damaging(0.887) TCGA-L5-A8NM-01 20 629214 629214 G A RP5-850E9.3 3'UTR 0.38 TCGA-L5-A8NM-01 21 19638458 19638458 A G CHODL 3'UTR 0.27 TCGA-L5-A8NM-01 21 22370772 22370772 C T NCAM2 5'UTR 0.36 TCGA-L5-A8NM-01 21 27264106 27264106 C T APP Silent p.A713A 0.29 TCGA-L5-A8NM-01 21 28295864 28295864 C T ADAMTS5 3'UTR 0.23 TCGA-L5-A8NM-01 21 30338185 30338185 A G LTN1 Splice_Site p.X767_splice 0.07 TCGA-L5-A8NM-01 21 30357050 30357050 G T LTN1 Missense_Mutation p.P226H 0.20 deleterious(0) probably_damaging(0.973) TCGA-L5-A8NM-01 21 33040846 33040846 C T SOD1 Silent p.N140N 0.26 TCGA-L5-A8NM-01 21 35474265 35474265 T - SLC5A3 3'UTR 0.21 TCGA-L5-A8NM-01 21 37618129 37618129 G A DOPEY2 Missense_Mutation p.R1284H 0.13 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 21 37661367 37661367 G A DOPEY2 Silent p.T2126T 0.21 TCGA-L5-A8NM-01 21 38439662 38439662 T C PIGP Silent p.L82L 0.14 TCGA-L5-A8NM-01 21 40619643 40619643 G A BRWD1 Missense_Mutation p.S822L 0.24 tolerated(0.07) probably_damaging(0.942) TCGA-L5-A8NM-01 21 40762674 40762674 G A WRB Silent p.A51A 0.31 TCGA-L5-A8NM-01 21 40871812 40871812 G T SH3BGR Missense_Mutation p.G189C 0.14 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-L5-A8NM-01 21 42749721 42749721 C T MX2 Silent p.P85P 0.19 TCGA-L5-A8NM-01 21 43412316 43412317 TC - ZBTB21 Frame_Shift_Del p.E630Nfs*2 0.27 TCGA-L5-A8NM-01 21 44190872 44190872 C T PDE9A Silent p.Y550Y 0.33 TCGA-L5-A8NM-01 21 44275838 44275838 C T WDR4 Missense_Mutation p.C227Y 0.12 tolerated(0.11) benign(0.019) TCGA-L5-A8NM-01 21 44837638 44837638 C T SIK1 Silent p.R587R 0.07 TCGA-L5-A8NM-01 21 45152204 45152205 - C PDXK Intron 0.12 TCGA-L5-A8NM-01 21 45502962 45502962 G A TRAPPC10 Missense_Mutation p.A673T 0.32 tolerated(0.2) benign(0.01) TCGA-L5-A8NM-01 21 46117509 46117509 C T KRTAP10-12 Silent p.C131C 0.16 TCGA-L5-A8NM-01 21 46354062 46354062 G A C21orf67 3'Flank 0.13 TCGA-L5-A8NM-01 21 46918280 46918280 A G COL18A1 Intron 0.17 TCGA-L5-A8NM-01 21 46930024 46930024 G A COL18A1 Missense_Mutation p.G1361D 0.30 probably_damaging(1) TCGA-L5-A8NM-01 21 47418819 47418819 G T COL6A1 Missense_Mutation p.K540N 0.18 deleterious(0.02) probably_damaging(0.966) TCGA-L5-A8NM-01 21 47423639 47423639 C T COL6A1 Silent p.G933G 0.33 TCGA-L5-A8NM-01 21 47571590 47571591 - C FTCD Frame_Shift_Ins p.A173Gfs*14 0.27 TCGA-L5-A8NM-01 22 17488851 17488852 - G GAB4 Frame_Shift_Ins p.E52Rfs*22 0.19 TCGA-L5-A8NM-01 22 17662461 17662461 C T CECR1 Missense_Mutation p.S483N 0.30 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NM-01 22 18222896 18222896 C T BID Intron 0.39 TCGA-L5-A8NM-01 22 18613631 18613631 C A TUBA8 Missense_Mutation p.P360T 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A8NM-01 22 20074724 20074724 G T DGCR8 Missense_Mutation p.G254C 0.12 deleterious(0) probably_damaging(0.982) TCGA-L5-A8NM-01 22 20099880 20099880 C T TRMT2A 3'UTR 0.16 TCGA-L5-A8NM-01 22 20132832 20132833 - C ZDHHC8 Intron 0.28 TCGA-L5-A8NM-01 22 20342668 20342668 T C XXbac-B33L19.6 5'Flank 0.62 TCGA-L5-A8NM-01 22 21058315 21058315 C T PI4KA 3'Flank 0.08 TCGA-L5-A8NM-01 22 21161675 21161675 C T PI4KA Silent p.L381L 0.21 TCGA-L5-A8NM-01 22 21348525 21348525 C A LZTR1 Missense_Mutation p.L528I 0.26 tolerated(0.76) benign(0.059) TCGA-L5-A8NM-01 22 21355663 21355663 G A THAP7 Silent p.L40L 0.33 TCGA-L5-A8NM-01 22 21989794 21989794 G A CCDC116 Intron 0.18 TCGA-L5-A8NM-01 22 22287874 22287874 G A PPM1F Silent p.H212H 0.19 TCGA-L5-A8NM-01 22 22318305 22318305 C A TOP3B Missense_Mutation p.E398D 0.41 tolerated(0.11) benign(0.076) TCGA-L5-A8NM-01 22 22842653 22842653 C T ZNF280B Silent p.Q357Q 0.13 TCGA-L5-A8NM-01 22 23264995 23264995 G A IGLC7 Silent p.E77E 0.27 TCGA-L5-A8NM-01 22 23466441 23466442 - A RTDR1 Intron 0.21 TCGA-L5-A8NM-01 22 24106534 24106534 G A C22orf15 Missense_Mutation p.G67D 0.25 deleterious(0.05) probably_damaging(0.964) TCGA-L5-A8NM-01 22 24447362 24447362 A - CABIN1 Frame_Shift_Del p.K246Rfs*5 0.16 TCGA-L5-A8NM-01 22 24659492 24659492 G T POM121L9P RNA 0.26 TCGA-L5-A8NM-01 22 26830127 26830127 C T ASPHD2 Silent p.D182D 0.16 TCGA-L5-A8NM-01 22 26921769 26921769 T - TPST2 3'UTR 0.13 TCGA-L5-A8NM-01 22 27068613 27068613 C T MIAT RNA 0.28 TCGA-L5-A8NM-01 22 29450950 29450950 T C ZNRF3 3'UTR 0.12 TCGA-L5-A8NM-01 22 29490351 29490351 A G KREMEN1 Missense_Mutation p.Y68C 0.15 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NM-01 22 29737580 29737580 G A AP1B1 Missense_Mutation p.T569M 0.37 tolerated(0.05) benign(0.191) TCGA-L5-A8NM-01 22 30221678 30221678 C T ASCC2 Missense_Mutation p.R58H 0.10 tolerated(0.27) benign(0.049) TCGA-L5-A8NM-01 22 30775768 30775768 T C RNF215 Missense_Mutation p.H348R 0.16 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 22 30977620 30977620 G A PES1 Silent p.D214D 0.25 TCGA-L5-A8NM-01 22 31006966 31006966 T C TCN2 Missense_Mutation p.L58P 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 22 31658156 31658156 C T LIMK2 Silent p.N175N 0.21 TCGA-L5-A8NM-01 22 31658176 31658176 G A LIMK2 Missense_Mutation p.R182H 0.33 deleterious(0.03) benign(0.216) TCGA-L5-A8NM-01 22 31737641 31737641 G A PATZ1 Intron 0.14 TCGA-L5-A8NM-01 22 31740467 31740467 C T PATZ1 Silent p.K374K 0.14 TCGA-L5-A8NM-01 22 32014440 32014440 G - SFI1 3'UTR 0.17 TCGA-L5-A8NM-01 22 32099549 32099549 G - PRR14L Frame_Shift_Del p.P1996Qfs*42 0.17 TCGA-L5-A8NM-01 22 32111916 32111916 A G PRR14L Missense_Mutation p.C637R 0.11 tolerated(0.31) benign(0.007) TCGA-L5-A8NM-01 22 32783907 32783907 C T RTCB 3'UTR 0.23 TCGA-L5-A8NM-01 22 32881117 32881117 G A FBXO7 Silent p.L236L 0.15 TCGA-L5-A8NM-01 22 36897401 36897401 C T FOXRED2 Missense_Mutation p.R368Q 0.17 tolerated(0.06) benign(0.071) TCGA-L5-A8NM-01 22 37458761 37458761 C - KCTD17 3'UTR 0.27 TCGA-L5-A8NM-01 22 38019411 38019411 G A GGA1 Silent p.T229T 0.26 TCGA-L5-A8NM-01 22 38122337 38122337 C T TRIOBP Silent p.P1258P 0.17 TCGA-L5-A8NM-01 22 38129304 38129304 G T TRIOBP Splice_Site p.X1316_splice 0.17 TCGA-L5-A8NM-01 22 38612001 38612001 C T MAFF 3'UTR 0.35 TCGA-L5-A8NM-01 22 39218069 39218069 G C NPTXR 3'UTR 0.18 TCGA-L5-A8NM-01 22 39262968 39262968 C T CBX6 Missense_Mutation p.R162H 0.24 deleterious(0.04) probably_damaging(0.964) TCGA-L5-A8NM-01 22 40060801 40060801 G A CACNA1I Missense_Mutation p.V1242M 0.19 deleterious(0) possibly_damaging(0.867) TCGA-L5-A8NM-01 22 40417669 40417670 - C FAM83F Frame_Shift_Ins p.V388Rfs*79 0.28 TCGA-L5-A8NM-01 22 40657941 40657941 C T TNRC6B Missense_Mutation p.A74V 0.11 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 22 40704591 40704591 G T TNRC6B Missense_Mutation p.W1399L 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A8NM-01 22 40722438 40722439 - A TNRC6B 3'UTR 0.11 TCGA-L5-A8NM-01 22 40731028 40731028 T - TNRC6B 3'UTR 0.31 TCGA-L5-A8NM-01 22 41513396 41513396 A G EP300 Silent p.P100P 0.20 TCGA-L5-A8NM-01 22 42093433 42093433 G A C22orf46 3'UTR 0.12 TCGA-L5-A8NM-01 22 42556067 42556068 - T TCF20 3'UTR 0.19 TCGA-L5-A8NM-01 22 42779754 42779754 C - NFAM1 3'UTR 0.31 TCGA-L5-A8NM-01 22 43870648 43870648 G A MPPED1 Missense_Mutation p.A147T 0.39 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 22 44692715 44692715 G A KIAA1644 Missense_Mutation p.R40C 0.16 deleterious(0) possibly_damaging(0.616) TCGA-L5-A8NM-01 22 45593025 45593025 C T KIAA0930 3'UTR 0.14 TCGA-L5-A8NM-01 22 46658462 46658462 C T PKDREJ Missense_Mutation p.R253H 0.21 tolerated(0.29) benign(0.009) TCGA-L5-A8NM-01 22 47569647 47569647 C T TBC1D22A 3'UTR 0.11 TCGA-L5-A8NM-01 22 49147173 49147173 C T FAM19A5 3'Flank 0.16 TCGA-L5-A8NM-01 22 49147299 49147299 A - FAM19A5 3'Flank 0.23 TCGA-L5-A8NM-01 22 50297990 50297991 - G ALG12 Frame_Shift_Ins p.Q386Pfs*9 0.34 TCGA-L5-A8NM-01 22 50885153 50885153 G T SBF1 3'UTR 0.22 TCGA-L5-A8NM-01 22 51183225 51183225 G A ACR Missense_Mutation p.A286T 0.11 tolerated(0.08) possibly_damaging(0.656) TCGA-L5-A8NM-01 22 51183711 51183712 AT - ACR 3'UTR 0.41 TCGA-L5-A8NM-01 2 100209760 100209760 A G AFF3 Missense_Mutation p.V813A 0.07 tolerated(0.82) benign(0.001) TCGA-L5-A8NM-01 2 100623247 100623247 G T AFF3 Silent p.G265G 0.19 TCGA-L5-A8NM-01 2 100720936 100720936 G A AFF3 5'UTR 0.28 TCGA-L5-A8NM-01 2 101667040 101667040 G A TBC1D8 Missense_Mutation p.T217M 0.16 deleterious(0) probably_damaging(0.953) TCGA-L5-A8NM-01 2 10199034 10199034 G A CYS1 Silent p.Y141Y 0.14 TCGA-L5-A8NM-01 2 102988513 102988513 T A IL18R1 Missense_Mutation p.F135I 0.29 tolerated(0.33) benign(0.008) TCGA-L5-A8NM-01 2 105472906 105472906 A G POU3F3 Missense_Mutation p.D313G 0.10 deleterious(0.01) probably_damaging(0.913) TCGA-L5-A8NM-01 2 107040056 107040056 G A RGPD3 Missense_Mutation p.S1456L 0.20 tolerated(0.23) benign(0.091) TCGA-L5-A8NM-01 2 107423316 107423316 C T ST6GAL2 Missense_Mutation p.E470K 0.29 probably_damaging(1) TCGA-L5-A8NM-01 2 108626718 108626718 C T SLC5A7 Nonsense_Mutation p.R382* 0.32 TCGA-L5-A8NM-01 2 108881297 108881297 T A SULT1C3 Missense_Mutation p.I213N 0.21 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 2 109400949 109400949 C A RANBP2 3'UTR 0.12 TCGA-L5-A8NM-01 2 11323100 11323100 G A ROCK2 3'UTR 0.30 TCGA-L5-A8NM-01 2 113287064 113287064 A - TTL 3'UTR 0.25 TCGA-L5-A8NM-01 2 113956432 113956432 C A PSD4 Missense_Mutation p.L914M 0.21 deleterious(0.02) benign(0.4) TCGA-L5-A8NM-01 2 113956438 113956438 G A PSD4 Missense_Mutation p.V916M 0.20 tolerated(0.57) benign(0.019) TCGA-L5-A8NM-01 2 11960543 11960543 T C LPIN1 Missense_Mutation p.Y891H 0.27 deleterious(0.01) probably_damaging(0.99) TCGA-L5-A8NM-01 2 11964848 11964848 T C LPIN1 Silent p.S953S 0.26 TCGA-L5-A8NM-01 2 121108879 121108879 T - INHBB 3'UTR 0.42 TCGA-L5-A8NM-01 2 122486069 122486069 G A NIFK Missense_Mutation p.T203M 0.33 tolerated(0.13) benign(0) TCGA-L5-A8NM-01 2 125192203 125192203 G A CNTNAP5 Silent p.Q224Q 0.16 TCGA-L5-A8NM-01 2 128396003 128396003 G A LIMS2 3'UTR 0.10 TCGA-L5-A8NM-01 2 128620371 128620371 T C AMMECR1L 3'UTR 0.17 TCGA-L5-A8NM-01 2 130941391 130941391 C - MZT2B Intron 0.11 TCGA-L5-A8NM-01 2 1312285 1312285 G A SNTG2 Missense_Mutation p.S435N 0.12 tolerated(0.05) possibly_damaging(0.884) TCGA-L5-A8NM-01 2 133427592 133427592 C T LYPD1 5'UTR 0.26 TCGA-L5-A8NM-01 2 133429611 133429611 A G NCKAP5 3'UTR 0.14 TCGA-L5-A8NM-01 2 135985510 135985510 T - ZRANB3 Frame_Shift_Del p.K677Rfs*58 0.13 TCGA-L5-A8NM-01 2 136103154 136103154 C T ZRANB3 Missense_Mutation p.D215N 0.20 deleterious(0.01) possibly_damaging(0.756) TCGA-L5-A8NM-01 2 136396514 136396514 C T R3HDM1 Silent p.S347S 0.25 TCGA-L5-A8NM-01 2 141108458 141108458 T C LRP1B Missense_Mutation p.M3934V 0.37 benign(0.019) TCGA-L5-A8NM-01 2 141208184 141208184 T C LRP1B Missense_Mutation p.D3337G 0.19 possibly_damaging(0.822) TCGA-L5-A8NM-01 2 1442587 1442587 G T TPO Intron 0.19 TCGA-L5-A8NM-01 2 148685627 148685627 A - ACVR2A 3'UTR 0.27 TCGA-L5-A8NM-01 2 151325286 151325286 C A RND3 3'UTR 0.33 TCGA-L5-A8NM-01 2 151326627 151326630 TTTA - RND3 Frame_Shift_Del p.N202Kfs*41 0.13 TCGA-L5-A8NM-01 2 152363516 152363516 C T NEB Silent p.Q7821Q 0.36 TCGA-L5-A8NM-01 2 155303149 155303149 C T GALNT13 Intron 0.34 TCGA-L5-A8NM-01 2 15614272 15614272 C T NBAS Silent p.R506R 0.14 TCGA-L5-A8NM-01 2 15694247 15694248 - A NBAS Frame_Shift_Ins p.L75Ffs*4 0.26 TCGA-L5-A8NM-01 2 159517033 159517033 C T PKP4 Intron 0.14 TCGA-L5-A8NM-01 2 160885468 160885468 A G PLA2R1 Missense_Mutation p.M283T 0.34 deleterious(0) benign(0.04) TCGA-L5-A8NM-01 2 1636874 1636874 A - PXDN 3'UTR 0.15 TCGA-L5-A8NM-01 2 1652402 1652402 G A PXDN Silent p.Y1050Y 0.18 TCGA-L5-A8NM-01 2 165353548 165353548 C T GRB14 Missense_Mutation p.R451Q 0.33 tolerated(0.22) benign(0.01) TCGA-L5-A8NM-01 2 165944716 165944716 T C SCN3A 3'UTR 0.08 TCGA-L5-A8NM-01 2 165944961 165944961 A - SCN3A 3'UTR 0.26 TCGA-L5-A8NM-01 2 165948847 165948847 A G SCN3A Missense_Mutation p.L1575P 0.10 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NM-01 2 165986559 165986559 C T SCN3A Missense_Mutation p.R938H 0.38 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 2 166171983 166171983 G A SCN2A Silent p.A462A 0.19 TCGA-L5-A8NM-01 2 166351278 166351278 A G CSRNP3 5'UTR 0.20 TCGA-L5-A8NM-01 2 167055647 167055647 G A SCN9A Silent p.D1823D 0.22 TCGA-L5-A8NM-01 2 167134703 167134703 C T SCN9A Missense_Mutation p.E811K 0.11 deleterious(0) probably_damaging(0.917) TCGA-L5-A8NM-01 2 1677547 1677547 A G PXDN Silent p.L296L 0.30 TCGA-L5-A8NM-01 2 1680771 1680771 G A PXDN Missense_Mutation p.S259L 0.36 tolerated(0.66) benign(0.02) TCGA-L5-A8NM-01 2 169757806 169757807 - A G6PC2 5'UTR 0.23 TCGA-L5-A8NM-01 2 170115713 170115713 C T LRP2 Missense_Mutation p.A779T 0.27 benign(0.002) TCGA-L5-A8NM-01 2 170465183 170465183 G A PPIG Missense_Mutation p.E98K 0.11 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 2 171823114 171823114 G A GORASP2 3'UTR 0.35 TCGA-L5-A8NM-01 2 173885367 173885367 A G RAPGEF4 Missense_Mutation p.N726S 0.29 tolerated(0.29) benign(0.015) TCGA-L5-A8NM-01 2 176996151 176996151 C T HOXD8 Silent p.I228I 0.15 TCGA-L5-A8NM-01 2 17898356 17898356 T - SMC6 Frame_Shift_Del p.S394Vfs*20 0.11 TCGA-L5-A8NM-01 2 179411075 179411075 T - TTN Frame_Shift_Del p.V31662Sfs*13 0.17 TCGA-L5-A8NM-01 2 179560737 179560737 T - TTN Frame_Shift_Del p.E10355Kfs*39 0.21 TCGA-L5-A8NM-01 2 179616234 179616234 T C TTN Intron 0.13 TCGA-L5-A8NM-01 2 1893213 1893213 C A MYT1L Missense_Mutation p.D772Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NM-01 2 191382316 191382316 G A TMEM194B Missense_Mutation p.S181L 0.12 tolerated(0.1) benign(0.08) TCGA-L5-A8NM-01 2 191873795 191873795 C T STAT1 Missense_Mutation p.R56H 0.22 deleterious(0.01) possibly_damaging(0.871) TCGA-L5-A8NM-01 2 193049181 193049181 C T TMEFF2 Missense_Mutation p.G104D 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 2 197065048 197065048 A T HECW2 3'UTR 0.16 TCGA-L5-A8NM-01 2 197712754 197712754 G A PGAP1 Silent p.C623C 0.13 TCGA-L5-A8NM-01 2 198572680 198572680 A - MARS2 3'UTR 0.23 TCGA-L5-A8NM-01 2 200828573 200828573 C T C2orf47 3'UTR 0.32 TCGA-L5-A8NM-01 2 204058623 204058623 T - NBEAL1 Frame_Shift_Del p.F2315Lfs*2 0.16 TCGA-L5-A8NM-01 2 204309641 204309641 C T RAPH1 Missense_Mutation p.V576I 0.33 benign(0.003) TCGA-L5-A8NM-01 2 209184973 209184973 T C PIKFYVE Intron 0.11 TCGA-L5-A8NM-01 2 210818993 210818993 A C UNC80 Silent p.R2420R 0.39 TCGA-L5-A8NM-01 2 210885674 210885674 C T RPE 3'UTR 0.42 TCGA-L5-A8NM-01 2 213403245 213403245 C T ERBB4 Missense_Mutation p.A4T 0.11 tolerated_low_confidence(0.21) benign(0.001) TCGA-L5-A8NM-01 2 214160791 214160791 T A SPAG16 Missense_Mutation p.V47D 0.15 deleterious(0) probably_damaging(0.945) TCGA-L5-A8NM-01 2 216256480 216256480 A G FN1 Missense_Mutation p.V1376A 0.18 deleterious(0.03) possibly_damaging(0.846) TCGA-L5-A8NM-01 2 216300590 216300590 C T FN1 5'UTR 0.32 TCGA-L5-A8NM-01 2 216990641 216990642 GA - XRCC5 Frame_Shift_Del p.L231Efs*10 0.27 TCGA-L5-A8NM-01 2 216990677 216990677 G A XRCC5 Missense_Mutation p.E241K 0.12 deleterious(0.03) benign(0.216) TCGA-L5-A8NM-01 2 217142513 217142513 G A MARCH4 Silent p.I249I 0.20 TCGA-L5-A8NM-01 2 218999520 218999521 - A CXCR2 5'UTR p.M1? 0.25 TCGA-L5-A8NM-01 2 219923425 219923425 C G IHH Intron 0.26 TCGA-L5-A8NM-01 2 220101209 220101209 G T ANKZF1 3'UTR 0.29 TCGA-L5-A8NM-01 2 220161986 220161986 T C PTPRN Missense_Mutation p.N686S 0.13 deleterious(0.02) possibly_damaging(0.483) TCGA-L5-A8NM-01 2 220349121 220349121 G A SPEG Silent p.V2312V 0.13 TCGA-L5-A8NM-01 2 222294769 222294769 C T EPHA4 Missense_Mutation p.D867N 0.10 tolerated(0.43) probably_damaging(0.98) TCGA-L5-A8NM-01 2 223507641 223507641 G A FARSB Silent p.D66D 0.23 TCGA-L5-A8NM-01 2 226446862 226446862 C T NYAP2 Silent p.P243P 0.36 TCGA-L5-A8NM-01 2 227860175 227860175 C T RHBDD1 Silent p.Y295Y 0.12 TCGA-L5-A8NM-01 2 228128620 228128620 A G COL4A3 Silent p.S425S 0.16 TCGA-L5-A8NM-01 2 230902154 230902154 G A SLC16A14 Missense_Mutation p.P492L 0.19 tolerated(0.08) benign(0.181) TCGA-L5-A8NM-01 2 230910774 230910774 C T SLC16A14 Silent p.T356T 0.15 TCGA-L5-A8NM-01 2 232030597 232030597 A - PSMD1 Frame_Shift_Del p.K862Rfs*31 0.11 TCGA-L5-A8NM-01 2 232790897 232790897 G A NPPC Silent p.S21S 0.36 TCGA-L5-A8NM-01 2 233349197 233349197 C T ECEL1 Missense_Mutation p.R390H 0.25 tolerated(0.07) benign(0.019) TCGA-L5-A8NM-01 2 233735014 233735014 G A C2orf82 5'UTR 0.18 TCGA-L5-A8NM-01 2 234750242 234750242 G A HJURP Missense_Mutation p.T395I 0.16 tolerated(0.42) benign(0.026) TCGA-L5-A8NM-01 2 235950921 235950921 C T SH3BP4 Missense_Mutation p.T503M 0.33 deleterious(0.02) benign(0.137) TCGA-L5-A8NM-01 2 238232746 238232747 CA - COL6A3 3'UTR 0.19 TCGA-L5-A8NM-01 2 238253585 238253585 G A COL6A3 Silent p.Y2391Y 0.38 TCGA-L5-A8NM-01 2 23865629 23865630 - C KLHL29 Frame_Shift_Ins p.T286Hfs*20 0.11 TCGA-L5-A8NM-01 2 238991922 238991922 C T SCLY Nonsense_Mutation p.R279* 0.12 TCGA-L5-A8NM-01 2 239054401 239054401 G A KLHL30 Missense_Mutation p.V360M 0.35 tolerated(0.06) probably_damaging(0.941) TCGA-L5-A8NM-01 2 239059686 239059686 G A KLHL30 Missense_Mutation p.G573S 0.24 tolerated_low_confidence(0.51) benign(0.001) TCGA-L5-A8NM-01 2 239079047 239079047 A - ILKAP 3'UTR 0.32 TCGA-L5-A8NM-01 2 239237829 239237830 - G TRAF3IP1 Frame_Shift_Ins p.K257Efs*44 0.34 TCGA-L5-A8NM-01 2 239974110 239974110 A - HDAC4 3'UTR 0.46 TCGA-L5-A8NM-01 2 240923039 240923039 G A NDUFA10 Intron 0.25 TCGA-L5-A8NM-01 2 241465733 241465733 G A ANKMY1 Silent p.H272H 0.28 TCGA-L5-A8NM-01 2 241512531 241512531 C A RNPEPL1 5'UTR 0.21 TCGA-L5-A8NM-01 2 241817492 241817492 G T AGXT Missense_Mutation p.W332C 0.19 deleterious(0.03) probably_damaging(0.992) TCGA-L5-A8NM-01 2 242195709 242195709 G A HDLBP Missense_Mutation p.R255C 0.09 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NM-01 2 242754644 242754644 C - NEU4 Intron 0.13 TCGA-L5-A8NM-01 2 242795103 242795104 - G PDCD1 Frame_Shift_Ins p.T36Hfs*70 0.22 TCGA-L5-A8NM-01 2 25536891 25536891 G - DNMT3A 5'UTR 0.26 TCGA-L5-A8NM-01 2 25964831 25964831 C T ASXL2 3'UTR 0.14 TCGA-L5-A8NM-01 2 26405062 26405062 G T GAREML Intron 0.31 TCGA-L5-A8NM-01 2 26700559 26700559 C T OTOF Missense_Mutation p.R758H 0.33 deleterious(0.01) possibly_damaging(0.762) TCGA-L5-A8NM-01 2 26700658 26700658 G A OTOF Intron 0.11 TCGA-L5-A8NM-01 2 26725267 26725267 T C OTOF Missense_Mutation p.D204G 0.37 tolerated(0.13) possibly_damaging(0.624) TCGA-L5-A8NM-01 2 27455420 27455420 T C CAD Missense_Mutation p.L917P 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 2 27558466 27558466 T C GTF3C2 Silent p.P525P 0.24 TCGA-L5-A8NM-01 2 27804744 27804744 C T C2orf16 Missense_Mutation p.P1769S 0.21 tolerated(0.18) benign(0.032) TCGA-L5-A8NM-01 2 27844551 27844551 T - ZNF512 3'UTR 0.21 TCGA-L5-A8NM-01 2 28827531 28827531 C T PLB1 Missense_Mutation p.R956C 0.18 deleterious(0) probably_damaging(0.953) TCGA-L5-A8NM-01 2 29240775 29240775 G T FAM179A Missense_Mutation p.S438I 0.17 deleterious(0) possibly_damaging(0.856) TCGA-L5-A8NM-01 2 29445225 29445225 T G ALK Missense_Mutation p.E1167A 0.23 deleterious(0) probably_damaging(0.928) TCGA-L5-A8NM-01 2 33745019 33745019 G A RASGRP3 Missense_Mutation p.M58I 0.12 tolerated(0.33) benign(0.001) TCGA-L5-A8NM-01 2 39024993 39025044 TCCCCTTCTCTGTTCTGACTTCTCTCAGTCGAGCCTTGGCGACAGGAAAAGA CCCCTTCTCTGTTCTGACTTCTCTCAGTCGAGCCTTGGCGACAGGAAAAG DHX57 3'UTR 0.14 TCGA-L5-A8NM-01 2 39089427 39089427 G A DHX57 Silent p.N144N 0.19 TCGA-L5-A8NM-01 2 39164523 39164523 C A ARHGEF33 Missense_Mutation p.L205I 0.21 tolerated(0.44) benign(0.004) TCGA-L5-A8NM-01 2 42280450 42280450 C G PKDCC Silent p.A237A 0.16 TCGA-L5-A8NM-01 2 42511825 42511825 C T EML4 Silent p.G331G 0.14 TCGA-L5-A8NM-01 2 42557031 42557031 C T EML4 Missense_Mutation p.A877V 0.23 tolerated_low_confidence(0.61) benign(0.001) TCGA-L5-A8NM-01 2 42990002 42990002 C T OXER1 3'UTR 0.15 TCGA-L5-A8NM-01 2 44101062 44101062 G A ABCG8 Missense_Mutation p.A450T 0.19 deleterious(0) probably_damaging(0.946) TCGA-L5-A8NM-01 2 46608780 46608780 G A EPAS1 Silent p.P697P 0.15 TCGA-L5-A8NM-01 2 48032796 48032796 G A MSH6 Missense_Mutation p.S1199N 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A8NM-01 2 49190770 49190770 G A FSHR Missense_Mutation p.P397L 0.21 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NM-01 2 50574009 50574011 CGC - NRXN1 Intron 0.33 TCGA-L5-A8NM-01 2 55209688 55209688 C T RTN4 Missense_Mutation p.R1108H 0.16 deleterious(0.03) probably_damaging(0.979) TCGA-L5-A8NM-01 2 55476628 55476628 G A MTIF2 Missense_Mutation p.A295V 0.24 tolerated(0.06) benign(0.13) TCGA-L5-A8NM-01 2 5834279 5834279 A G SOX11 3'UTR 0.29 TCGA-L5-A8NM-01 2 5841386 5841387 - C SOX11 3'UTR 0.20 TCGA-L5-A8NM-01 2 60687345 60687345 A - BCL11A 3'UTR 0.31 TCGA-L5-A8NM-01 2 63631702 63631702 C T WDPCP Missense_Mutation p.V306I 0.16 tolerated(1) benign(0.002) TCGA-L5-A8NM-01 2 64323617 64323617 T C PELI1 Missense_Mutation p.E144G 0.11 deleterious(0) benign(0.155) TCGA-L5-A8NM-01 2 68361758 68361758 A - WDR92 Intron 0.17 TCGA-L5-A8NM-01 2 68882177 68882177 C T PROKR1 Silent p.C217C 0.16 TCGA-L5-A8NM-01 2 70122235 70122235 G A SNRNP27 Missense_Mutation p.R15H 0.19 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NM-01 2 71304726 71304726 C T NAGK Silent p.C314C 0.13 TCGA-L5-A8NM-01 2 71681137 71681137 G A DYSF Silent p.R3R 0.06 TCGA-L5-A8NM-01 2 7179767 7179767 G A RNF144A Missense_Mutation p.G252D 0.10 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NM-01 2 72358969 72358969 C T CYP26B1 3'UTR 0.46 TCGA-L5-A8NM-01 2 73143905 73143905 G T EMX1 5'Flank 0.29 TCGA-L5-A8NM-01 2 73481902 73481902 G T FBXO41 3'UTR 0.26 TCGA-L5-A8NM-01 2 73677340 73677340 C T ALMS1 Missense_Mutation p.T1228I 0.40 possibly_damaging(0.517) TCGA-L5-A8NM-01 2 74392409 74392409 A G MOB1A Silent p.I115I 0.33 TCGA-L5-A8NM-01 2 74757418 74757418 C A HTRA2 Silent p.A95A 0.15 TCGA-L5-A8NM-01 2 75157506 75157506 G A AC104135.3 RNA 0.20 TCGA-L5-A8NM-01 2 80529542 80529542 C T LRRTM1 Missense_Mutation p.R468H 0.12 tolerated(0.16) benign(0.012) TCGA-L5-A8NM-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.19 TCGA-L5-A8NM-01 2 86443997 86443997 A - REEP1 3'UTR 0.14 TCGA-L5-A8NM-01 2 86684136 86684136 G A KDM3A Missense_Mutation p.R262H 0.16 deleterious(0) possibly_damaging(0.803) TCGA-L5-A8NM-01 2 88751468 88751468 T C FOXI3 RNA 0.11 TCGA-L5-A8NM-01 2 88751645 88751645 C T FOXI3 RNA 0.10 TCGA-L5-A8NM-01 2 96578015 96578015 T - ANKRD36C Frame_Shift_Del p.K26Rfs*17 0.14 TCGA-L5-A8NM-01 2 96852544 96852544 T C STARD7 Missense_Mutation p.E346G 0.19 deleterious(0.04) benign(0.169) TCGA-L5-A8NM-01 2 97218190 97218192 GAA - ARID5A 3'UTR 0.40 TCGA-L5-A8NM-01 2 97504225 97504225 C T ANKRD23 3'UTR 0.29 TCGA-L5-A8NM-01 2 97749725 97749725 G - FAHD2B Frame_Shift_Del p.P281Qfs*26 0.26 TCGA-L5-A8NM-01 2 98543889 98543889 C A TMEM131 Missense_Mutation p.Q83H 0.12 deleterious(0.04) possibly_damaging(0.641) TCGA-L5-A8NM-01 2 99725853 99725854 - G TSGA10 Frame_Shift_Ins p.R17Pfs*6 0.18 TCGA-L5-A8NM-01 2 99778504 99778504 A - LIPT1 Frame_Shift_Del p.N30Mfs*26 0.16 TCGA-L5-A8NM-01 3 100014178 100014180 AAG - TBC1D23 In_Frame_Del p.E255del 0.15 TCGA-L5-A8NM-01 3 101312139 101312139 G A PCNP 3'UTR 0.25 TCGA-L5-A8NM-01 3 101371366 101371366 T A ZBTB11 Missense_Mutation p.Y873F 0.20 tolerated(0.06) probably_damaging(0.999) TCGA-L5-A8NM-01 3 101540493 101540493 C T NXPE3 Missense_Mutation p.R459W 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 3 105250904 105250904 A - ALCAM Frame_Shift_Del p.K153Sfs*34 0.22 TCGA-L5-A8NM-01 3 105377882 105377882 C T CBLB Missense_Mutation p.E961K 0.32 deleterious_low_confidence(0) benign(0.181) TCGA-L5-A8NM-01 3 108773580 108773580 C T MORC1 Missense_Mutation p.G442D 0.17 deleterious(0.02) probably_damaging(0.963) TCGA-L5-A8NM-01 3 108812346 108812346 C A MORC1 Missense_Mutation p.G209V 0.24 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 3 11079226 11079226 A - SLC6A1 3'UTR 0.12 TCGA-L5-A8NM-01 3 111764731 111764731 G A TMPRSS7 Missense_Mutation p.R98Q 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 3 111936361 111936362 - T SLC9C1 Frame_Shift_Ins p.T573Nfs*6 0.11 TCGA-L5-A8NM-01 3 113322843 113322843 C T SIDT1 Missense_Mutation p.R434W 0.22 deleterious(0.01) possibly_damaging(0.901) TCGA-L5-A8NM-01 3 114069876 114069876 C T ZBTB20 Missense_Mutation p.R350H 0.40 deleterious(0) probably_damaging(0.964) TCGA-L5-A8NM-01 3 11468322 11468322 G T ATG7 Missense_Mutation p.K667N 0.14 tolerated(0.11) benign(0.005) TCGA-L5-A8NM-01 3 115342449 115342449 G A GAP43 5'UTR 0.25 TCGA-L5-A8NM-01 3 11599883 11599883 C T VGLL4 3'Flank 0.18 TCGA-L5-A8NM-01 3 120050241 120050241 A T LRRC58 Missense_Mutation p.C308S 0.15 tolerated(1) benign(0.003) TCGA-L5-A8NM-01 3 123419012 123419012 C T MYLK Silent p.K1101K 0.18 TCGA-L5-A8NM-01 3 123453042 123453042 G A MYLK Silent p.T267T 0.20 TCGA-L5-A8NM-01 3 124117635 124117635 C T KALRN Nonsense_Mutation p.Q753* 0.15 TCGA-L5-A8NM-01 3 124952427 124952427 C T ZNF148 Silent p.A381A 0.32 TCGA-L5-A8NM-01 3 126185160 126185160 C T ZXDC Missense_Mutation p.A427T 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-L5-A8NM-01 3 126708216 126708216 G A PLXNA1 Silent p.T260T 0.41 TCGA-L5-A8NM-01 3 127774388 127774388 C T SEC61A1 Silent p.T35T 0.10 TCGA-L5-A8NM-01 3 128348877 128348877 G T RPN1 Missense_Mutation p.P318H 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 3 128628943 128628943 C T ACAD9 Missense_Mutation p.S548L 0.20 deleterious(0) probably_damaging(0.981) TCGA-L5-A8NM-01 3 128889077 128889077 G T CNBP 3'UTR 0.16 TCGA-L5-A8NM-01 3 129369562 129369563 - T TMCC1 3'UTR 0.21 TCGA-L5-A8NM-01 3 130110080 130110080 A - COL6A5 Frame_Shift_Del p.K827Nfs*7 0.17 TCGA-L5-A8NM-01 3 132363673 132363674 - T ACAD11 Frame_Shift_Ins p.P73Tfs*8 0.10 TCGA-L5-A8NM-01 3 133331322 133331322 C T TOPBP1 Missense_Mutation p.E1316K 0.26 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NM-01 3 13359206 13359206 C T NUP210 Nonsense_Mutation p.W1880* 0.12 TCGA-L5-A8NM-01 3 133666102 133666103 - G SLCO2A1 Frame_Shift_Ins p.S432* 0.11 TCGA-L5-A8NM-01 3 134075056 134075057 - A AMOTL2 3'UTR 0.14 TCGA-L5-A8NM-01 3 13417856 13417856 G A NUP210 Missense_Mutation p.R410C 0.20 tolerated(0.17) benign(0.39) TCGA-L5-A8NM-01 3 134670233 134670233 C T EPHB1 Silent p.Y48Y 0.27 TCGA-L5-A8NM-01 3 134670376 134670376 G A EPHB1 Missense_Mutation p.C96Y 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 3 13546120 13546120 T C HDAC11 Silent p.P327P 0.11 TCGA-L5-A8NM-01 3 13612491 13612491 G - FBLN2 Frame_Shift_Del p.G214Vfs*60 0.16 TCGA-L5-A8NM-01 3 137483819 137483819 C T SOX14 Missense_Mutation p.R65C 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 3 13860282 13860282 T - WNT7A 3'UTR 0.15 TCGA-L5-A8NM-01 3 141166171 141166171 C A ZBTB38 3'UTR 0.11 TCGA-L5-A8NM-01 3 14154262 14154262 A C CHCHD4 3'UTR 0.24 TCGA-L5-A8NM-01 3 141697454 141697454 C T TFDP2 Missense_Mutation p.V143I 0.12 deleterious(0.03) benign(0.057) TCGA-L5-A8NM-01 3 142025643 142025643 A G XRN1 3'UTR 0.28 TCGA-L5-A8NM-01 3 142168168 142168168 C T ATR 3'UTR 0.38 TCGA-L5-A8NM-01 3 142280140 142280140 G A ATR Missense_Mutation p.R432C 0.22 deleterious_low_confidence(0.01) benign(0.001) TCGA-L5-A8NM-01 3 142681484 142681484 C T PAQR9 Missense_Mutation p.R232H 0.17 deleterious(0) possibly_damaging(0.82) TCGA-L5-A8NM-01 3 143513850 143513850 C T SLC9A9 Missense_Mutation p.V176I 0.22 tolerated(0.36) benign(0.012) TCGA-L5-A8NM-01 3 143709142 143709142 T C C3orf58 3'UTR 0.34 TCGA-L5-A8NM-01 3 147120535 147120535 C T ZIC4 Missense_Mutation p.R67Q 0.08 tolerated_low_confidence(0.15) possibly_damaging(0.885) TCGA-L5-A8NM-01 3 150177347 150177347 T - TSC22D2 3'UTR 0.30 TCGA-L5-A8NM-01 3 150301832 150301832 C A EIF2A 3'UTR 0.33 TCGA-L5-A8NM-01 3 151095801 151095801 T A MED12L Missense_Mutation p.S1405T 0.14 deleterious(0.03) possibly_damaging(0.772) TCGA-L5-A8NM-01 3 153840548 153840548 C T ARHGEF26 Missense_Mutation p.A256V 0.26 deleterious(0.01) possibly_damaging(0.45) TCGA-L5-A8NM-01 3 153935686 153935686 G A ARHGEF26 Missense_Mutation p.R625Q 0.14 deleterious(0.03) benign(0.133) TCGA-L5-A8NM-01 3 155655421 155655421 T C GMPS Silent p.G674G 0.10 TCGA-L5-A8NM-01 3 157261261 157261261 T G C3orf55 5'UTR 0.13 TCGA-L5-A8NM-01 3 158415447 158415447 A - RARRES1 3'UTR 0.10 TCGA-L5-A8NM-01 3 160219829 160219829 C T KPNA4 3'UTR 0.37 TCGA-L5-A8NM-01 3 16343348 16343348 A - OXNAD1 Frame_Shift_Del p.N218Ifs*14 0.33 TCGA-L5-A8NM-01 3 165547794 165547795 - T BCHE Frame_Shift_Ins p.T343Nfs*8 0.15 TCGA-L5-A8NM-01 3 167437900 167437900 A T PDCD10 Missense_Mutation p.S16T 0.27 tolerated(0.45) benign(0.008) TCGA-L5-A8NM-01 3 169381319 169381319 C T MECOM 5'Flank 0.32 TCGA-L5-A8NM-01 3 17208335 17208335 T C TBC1D5 Missense_Mutation p.N695S 0.06 deleterious(0.01) benign(0.04) TCGA-L5-A8NM-01 3 176740276 176740276 A - TBL1XR1 3'UTR 0.11 TCGA-L5-A8NM-01 3 176743311 176743311 A C TBL1XR1 Missense_Mutation p.V507G 0.12 deleterious(0) possibly_damaging(0.846) TCGA-L5-A8NM-01 3 179519743 179519743 G A PEX5L Missense_Mutation p.A585V 0.10 tolerated(0.82) benign(0.001) TCGA-L5-A8NM-01 3 180334382 180334382 T G CCDC39 Missense_Mutation p.K836N 0.09 deleterious(0) possibly_damaging(0.452) TCGA-L5-A8NM-01 3 180694861 180694861 T C FXR1 3'UTR 0.19 TCGA-L5-A8NM-01 3 182804530 182804530 T C MCCC1 Missense_Mutation p.Y107C 0.07 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 3 183245687 183245687 C T KLHL6 Silent p.A135A 0.33 TCGA-L5-A8NM-01 3 183454555 183454555 A G YEATS2 Missense_Mutation p.R288G 0.12 deleterious(0.02) benign(0.03) TCGA-L5-A8NM-01 3 184075198 184075198 A C CLCN2 Missense_Mutation p.F284V 0.16 tolerated(0.16) possibly_damaging(0.808) TCGA-L5-A8NM-01 3 184675241 184675241 T C VPS8 Missense_Mutation p.F1039L 0.11 deleterious(0.02) benign(0.02) TCGA-L5-A8NM-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.24 deleterious_low_confidence(0.02) benign(0.001) TCGA-L5-A8NM-01 3 185184613 185184613 G A MAP3K13 Splice_Site p.X502_splice 0.19 TCGA-L5-A8NM-01 3 185970893 185970893 C T DGKG Missense_Mutation p.R530H 0.19 deleterious(0.04) possibly_damaging(0.597) TCGA-L5-A8NM-01 3 185993359 185993359 C T DGKG Missense_Mutation p.R296H 0.15 tolerated(0.15) probably_damaging(0.971) TCGA-L5-A8NM-01 3 186838923 186838923 G A RPL39L 3'UTR 0.19 TCGA-L5-A8NM-01 3 19190085 19190085 C - KCNH8 5'UTR 0.25 TCGA-L5-A8NM-01 3 194174452 194174452 A T ATP13A3 Missense_Mutation p.V274D 0.29 deleterious(0) probably_damaging(0.971) TCGA-L5-A8NM-01 3 194877218 194877218 C T XXYLT1 Missense_Mutation p.A249T 0.11 tolerated(0.26) benign(0.167) TCGA-L5-A8NM-01 3 195509046 195509046 G A MUC4 Silent p.T3135T 0.16 TCGA-L5-A8NM-01 3 195605917 195605917 C A TNK2 Intron 0.11 TCGA-L5-A8NM-01 3 19576133 19576133 A G KCNH8 3'UTR 0.13 TCGA-L5-A8NM-01 3 19576259 19576259 A - KCNH8 3'UTR 0.35 TCGA-L5-A8NM-01 3 195974305 195974305 C T PCYT1A Missense_Mutation p.R140H 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 3 196386809 196386809 G A NRROS Missense_Mutation p.G99S 0.08 deleterious(0.04) benign(0.067) TCGA-L5-A8NM-01 3 196386875 196386875 T C NRROS Missense_Mutation p.Y121H 0.28 deleterious(0.03) benign(0.033) TCGA-L5-A8NM-01 3 196737650 196737650 C T MFI2 Missense_Mutation p.A417T 0.14 deleterious(0.02) benign(0.258) TCGA-L5-A8NM-01 3 197687103 197687103 C A LMLN Missense_Mutation p.T4K 0.17 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A8NM-01 3 2613173 2613173 C T CNTN4 5'UTR 0.14 TCGA-L5-A8NM-01 3 27450945 27450945 G T SLC4A7 Missense_Mutation p.L606M 0.11 tolerated(0.15) probably_damaging(0.994) TCGA-L5-A8NM-01 3 28382061 28382061 T - AZI2 Frame_Shift_Del p.A17Pfs*7 0.29 TCGA-L5-A8NM-01 3 32933489 32933489 T - TRIM71 3'UTR 0.16 TCGA-L5-A8NM-01 3 32995849 32995849 G A CCR4 Missense_Mutation p.R312H 0.21 deleterious(0) probably_damaging(0.935) TCGA-L5-A8NM-01 3 33161920 33161920 G A CRTAP Missense_Mutation p.A186T 0.17 tolerated(0.54) benign(0.211) TCGA-L5-A8NM-01 3 37368076 37368076 C A GOLGA4 Missense_Mutation p.Q1589K 0.12 benign(0.007) TCGA-L5-A8NM-01 3 37368806 37368806 T C GOLGA4 Missense_Mutation p.L1832S 0.24 benign(0.026) TCGA-L5-A8NM-01 3 38049236 38049237 - G PLCD1 3'UTR 0.14 TCGA-L5-A8NM-01 3 38182018 38182018 C T MYD88 Silent p.G214G 0.27 TCGA-L5-A8NM-01 3 38591764 38591764 G T SCN5A 3'UTR 0.20 TCGA-L5-A8NM-01 3 38591903 38591903 T C SCN5A Missense_Mutation p.N1987S 0.12 tolerated(0.25) probably_damaging(0.995) TCGA-L5-A8NM-01 3 38622707 38622707 G A SCN5A Silent p.C981C 0.21 TCGA-L5-A8NM-01 3 39179044 39179044 C T TTC21A Missense_Mutation p.A1180V 0.06 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 3 41275790 41275790 T C CTNNB1 Splice_Site p.X561_splice 0.21 TCGA-L5-A8NM-01 3 42908758 42908758 C T ACKR2 3'UTR 0.32 TCGA-L5-A8NM-01 3 44283479 44283479 C T TOPAZ1 5'UTR 0.11 TCGA-L5-A8NM-01 3 45637755 45637755 G A LIMD1 Missense_Mutation p.A462T 0.35 tolerated(0.05) benign(0.314) TCGA-L5-A8NM-01 3 45718451 45718451 G A LIMD1 Missense_Mutation p.R644H 0.37 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 3 46417056 46417057 - G CCR5 3'UTR 0.20 TCGA-L5-A8NM-01 3 46417500 46417500 C T CCR5 3'UTR 0.14 TCGA-L5-A8NM-01 3 46875570 46875570 C T PRSS42 Missense_Mutation p.G6S 0.33 deleterious_low_confidence(0.03) unknown(0) TCGA-L5-A8NM-01 3 47040003 47040003 C T NBEAL2 Missense_Mutation p.R1057W 0.20 deleterious(0) benign(0.002) TCGA-L5-A8NM-01 3 47460943 47460943 C A SCAP Missense_Mutation p.E605D 0.12 tolerated(0.32) benign(0.001) TCGA-L5-A8NM-01 3 4829647 4829647 G A ITPR1 Missense_Mutation p.R2196Q 0.23 deleterious(0) benign(0.361) TCGA-L5-A8NM-01 3 48679345 48679345 C - CELSR3 Frame_Shift_Del p.R2922Afs*71 0.13 TCGA-L5-A8NM-01 3 49736506 49736506 C T RNF123 Silent p.S244S 0.22 TCGA-L5-A8NM-01 3 49739823 49739823 C T RNF123 Silent p.N538N 0.17 TCGA-L5-A8NM-01 3 49763190 49763190 G T IP6K1 3'UTR 0.13 TCGA-L5-A8NM-01 3 49898889 49898889 C T CAMKV Missense_Mutation p.V142M 0.14 deleterious(0.02) probably_damaging(0.982) TCGA-L5-A8NM-01 3 49935496 49935496 C T MST1R Missense_Mutation p.S623N 0.10 tolerated(0.11) benign(0.068) TCGA-L5-A8NM-01 3 50324872 50324872 G A LSMEM2 3'UTR 0.19 TCGA-L5-A8NM-01 3 51417604 51417604 C - DOCK3 Frame_Shift_Del p.P1852Qfs*45 0.24 TCGA-L5-A8NM-01 3 51452148 51452148 T C VPRBP Missense_Mutation p.D827G 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 3 51680478 51680478 G A RAD54L2 Missense_Mutation p.A1003T 0.42 tolerated(0.2) benign(0.032) TCGA-L5-A8NM-01 3 51749122 51749122 C T GRM2 Missense_Mutation p.R445C 0.11 deleterious(0.01) possibly_damaging(0.738) TCGA-L5-A8NM-01 3 52022810 52022810 C T ACY1 Missense_Mutation p.P344S 0.13 deleterious(0.04) possibly_damaging(0.562) TCGA-L5-A8NM-01 3 52514214 52514214 C T NISCH Silent p.S477S 0.20 TCGA-L5-A8NM-01 3 5261387 5261387 A - EDEM1 3'UTR 0.24 TCGA-L5-A8NM-01 3 52678784 52678784 T - PBRM1 Frame_Shift_Del p.I279Yfs*4 0.19 TCGA-L5-A8NM-01 3 52720836 52720836 A - GNL3 Frame_Shift_Del p.K24Rfs*9 0.24 TCGA-L5-A8NM-01 3 54798246 54798247 - T CACNA2D3 Frame_Shift_Ins p.T419Yfs*8 0.15 TCGA-L5-A8NM-01 3 54958936 54958936 A G LRTM1 Missense_Mutation p.L105P 0.13 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 3 58117681 58117681 G A FLNB Missense_Mutation p.R1473H 0.15 deleterious(0.05) benign(0.001) TCGA-L5-A8NM-01 3 64526866 64526866 C T ADAMTS9 Missense_Mutation p.R1809Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 3 64582642 64582642 G T ADAMTS9 Missense_Mutation p.S1348Y 0.16 tolerated(0.4) benign(0.222) TCGA-L5-A8NM-01 3 71005681 71005681 T C FOXP1 3'Flank 0.09 TCGA-L5-A8NM-01 3 73440193 73440193 G A PDZRN3 Silent p.D443D 0.25 TCGA-L5-A8NM-01 3 73673854 73673854 G A PDZRN3 Silent p.C41C 0.16 TCGA-L5-A8NM-01 3 74313552 74313552 T - CNTN3 Frame_Shift_Del p.*1029C 0.16 TCGA-L5-A8NM-01 3 78646606 78646607 - T ROBO1 3'UTR 0.34 TCGA-L5-A8NM-01 3 78647116 78647116 A G ROBO1 3'UTR 0.26 TCGA-L5-A8NM-01 3 78685185 78685185 A C ROBO1 Silent p.V1037V 0.20 TCGA-L5-A8NM-01 3 78685252 78685252 C T ROBO1 Missense_Mutation p.C1015Y 0.27 deleterious(0.01) benign(0.396) TCGA-L5-A8NM-01 3 8578939 8578939 G A LMCD1 Missense_Mutation p.R67Q 0.16 tolerated(0.33) benign(0.011) TCGA-L5-A8NM-01 3 8809115 8809115 C - OXTR Frame_Shift_Del p.R254Afs*23 0.26 TCGA-L5-A8NM-01 3 89499363 89499363 C - EPHA3 Frame_Shift_Del p.M847Wfs*10 0.10 TCGA-L5-A8NM-01 3 89528854 89528854 T - EPHA3 3'UTR 0.21 TCGA-L5-A8NM-01 3 93768343 93768343 C T ARL13B Missense_Mutation p.T373M 0.29 deleterious_low_confidence(0.03) possibly_damaging(0.665) TCGA-L5-A8NM-01 3 93780332 93780332 G A DHFRL1 Silent p.I8I 0.16 TCGA-L5-A8NM-01 3 9989596 9989596 G A PRRT3 Nonsense_Mutation p.R421* 0.25 TCGA-L5-A8NM-01 4 100268202 100268202 C T ADH1C Missense_Mutation p.V74M 0.19 probably_damaging(0.927) TCGA-L5-A8NM-01 4 100543977 100543977 C T MTTP Missense_Mutation p.P886L 0.29 deleterious(0.02) benign(0.079) TCGA-L5-A8NM-01 4 10446803 10446803 G A ZNF518B Missense_Mutation p.R384C 0.25 tolerated(0.09) benign(0) TCGA-L5-A8NM-01 4 106164884 106164884 C T TET2 Missense_Mutation p.T1251M 0.29 deleterious(0.02) possibly_damaging(0.908) TCGA-L5-A8NM-01 4 106196910 106196910 A G TET2 Missense_Mutation p.N1748S 0.21 tolerated(0.55) benign(0.047) TCGA-L5-A8NM-01 4 111397885 111397885 C T ENPEP Silent p.H105H 0.18 TCGA-L5-A8NM-01 4 111543527 111543527 G T PITX2 Silent p.P30P 0.08 TCGA-L5-A8NM-01 4 113540483 113540483 C T C4orf21 Missense_Mutation p.A239T 0.33 tolerated(0.5) benign(0.002) TCGA-L5-A8NM-01 4 114294594 114294594 G A ANK2 Missense_Mutation p.E3950K 0.23 benign(0.005) TCGA-L5-A8NM-01 4 114304663 114304663 T - ANK2 3'UTR 0.22 TCGA-L5-A8NM-01 4 119626837 119626837 T C METTL14 Silent p.V309V 0.11 TCGA-L5-A8NM-01 4 119810127 119810127 C A SYNPO2 5'UTR 0.36 TCGA-L5-A8NM-01 4 120107300 120107300 T C MYOZ2 Missense_Mutation p.V247A 0.16 tolerated(0.26) unknown(0) TCGA-L5-A8NM-01 4 120528330 120528330 C T PDE5A Missense_Mutation p.S92N 0.08 tolerated(0.16) benign(0.031) TCGA-L5-A8NM-01 4 122737745 122737745 T - CCNA2 3'UTR 0.20 TCGA-L5-A8NM-01 4 122854046 122854046 C T TRPC3 Missense_Mutation p.G123S 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 4 122854153 122854153 C T TRPC3 Missense_Mutation p.R87Q 0.12 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-L5-A8NM-01 4 123178534 123178534 C A KIAA1109 Missense_Mutation p.P2168H 0.15 benign(0.438) TCGA-L5-A8NM-01 4 129193546 129193547 CT - PGRMC2 Frame_Shift_Del p.S206Cfs*9 0.18 TCGA-L5-A8NM-01 4 134071446 134071446 C T PCDH10 Missense_Mutation p.R51C 0.19 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 4 134112145 134112145 C T PCDH10 3'UTR 0.17 TCGA-L5-A8NM-01 4 135248589 135248589 C T RP11-400D2.2 RNA 0.15 TCGA-L5-A8NM-01 4 13601800 13601800 G A BOD1L1 Nonsense_Mutation p.R2242* 0.16 TCGA-L5-A8NM-01 4 140291445 140291445 A - NAA15 Frame_Shift_Del p.N614Mfs*22 0.22 TCGA-L5-A8NM-01 4 141317358 141317358 C A CLGN Missense_Mutation p.D296Y 0.12 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 4 143067033 143067033 C A INPP4B Missense_Mutation p.K560N 0.12 tolerated(0.45) benign(0.001) TCGA-L5-A8NM-01 4 146029243 146029243 C T ABCE1 Missense_Mutation p.A89V 0.36 tolerated(0.23) benign(0.013) TCGA-L5-A8NM-01 4 146058514 146058514 T - OTUD4 3'UTR 0.38 TCGA-L5-A8NM-01 4 148550763 148550764 - T TMEM184C Frame_Shift_Ins p.G197Wfs*4 0.23 TCGA-L5-A8NM-01 4 15068501 15068501 T - CPEB2 3'UTR 0.20 TCGA-L5-A8NM-01 4 151023683 151023683 A - DCLK2 Frame_Shift_Del p.N160Ifs*8 0.17 TCGA-L5-A8NM-01 4 153244156 153244156 C - FBXW7 Frame_Shift_Del p.S668Vfs*39 0.19 TCGA-L5-A8NM-01 4 154257285 154257285 T C TRIM2 3'UTR 0.14 TCGA-L5-A8NM-01 4 155160425 155160425 C - DCHS2 Frame_Shift_Del p.Y2009Ifs*4 0.16 TCGA-L5-A8NM-01 4 155412142 155412142 G A DCHS2 Silent p.T122T 0.14 TCGA-L5-A8NM-01 4 158285236 158285236 A - GRIA2 3'UTR 0.09 TCGA-L5-A8NM-01 4 159814724 159814724 G A C4orf45 3'UTR 0.18 TCGA-L5-A8NM-01 4 160225603 160225603 G A RAPGEF2 Missense_Mutation p.S57N 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NM-01 4 160274855 160274855 G A RAPGEF2 Silent p.G1275G 0.35 TCGA-L5-A8NM-01 4 162463686 162463686 T C FSTL5 Missense_Mutation p.Q392R 0.19 tolerated(0.15) probably_damaging(0.952) TCGA-L5-A8NM-01 4 164449249 164449249 A T MARCH1 3'UTR 0.09 TCGA-L5-A8NM-01 4 165878577 165878578 - T FAM218A Frame_Shift_Ins p.V137Cfs*5 0.15 TCGA-L5-A8NM-01 4 169167687 169167687 T C DDX60 Missense_Mutation p.K1349R 0.13 tolerated(1) benign(0.016) TCGA-L5-A8NM-01 4 169611845 169611845 G A PALLD Missense_Mutation p.R476Q 0.14 deleterious(0.02) probably_damaging(0.957) TCGA-L5-A8NM-01 4 169812208 169812208 G T PALLD Silent p.P700P 0.10 TCGA-L5-A8NM-01 4 170669950 170669950 C A C4orf27 Missense_Mutation p.A148S 0.29 deleterious(0.01) possibly_damaging(0.741) TCGA-L5-A8NM-01 4 1719363 1719363 G T TMEM129 Silent p.L240L 0.19 TCGA-L5-A8NM-01 4 1730307 1730308 - C TACC3 Frame_Shift_Ins p.M396Hfs*17 0.19 TCGA-L5-A8NM-01 4 1746763 1746764 - C TACC3 3'UTR 0.16 TCGA-L5-A8NM-01 4 176554951 176554951 T C GPM6A 3'UTR 0.09 TCGA-L5-A8NM-01 4 178283532 178283532 T - NEIL3 Frame_Shift_Del p.F577Lfs*23 0.17 TCGA-L5-A8NM-01 4 178355571 178355571 A G AGA Silent p.T257T 0.24 TCGA-L5-A8NM-01 4 18023330 18023330 A G LCORL Silent p.A15A 0.38 TCGA-L5-A8NM-01 4 1809112 1809112 G C FGFR3 3'UTR 0.43 TCGA-L5-A8NM-01 4 183714347 183714347 C T TENM3 Silent p.R2174R 0.28 TCGA-L5-A8NM-01 4 184203860 184203860 G T WWC2 Splice_Site p.X895_splice 0.11 TCGA-L5-A8NM-01 4 184605469 184605469 G T TRAPPC11 Nonsense_Mutation p.G460* 0.12 TCGA-L5-A8NM-01 4 184931827 184931827 G A STOX2 Silent p.T612T 0.28 TCGA-L5-A8NM-01 4 186545131 186545131 G A SORBS2 Silent p.Y580Y 0.16 TCGA-L5-A8NM-01 4 1984589 1984589 C A NELFA 3'UTR 0.14 TCGA-L5-A8NM-01 4 20255565 20255565 G A SLIT2 Missense_Mutation p.G43R 0.18 tolerated(0.11) probably_damaging(0.953) TCGA-L5-A8NM-01 4 2066735 2066735 C T NAT8L 3'UTR 0.07 TCGA-L5-A8NM-01 4 2306375 2306375 G A ZFYVE28 Silent p.C564C 0.28 TCGA-L5-A8NM-01 4 23797449 23797449 C T PPARGC1A Missense_Mutation p.R798K 0.24 deleterious(0) unknown(0) TCGA-L5-A8NM-01 4 25335610 25335610 G T ZCCHC4 Missense_Mutation p.R229L 0.24 deleterious(0) benign(0.341) TCGA-L5-A8NM-01 4 26490891 26490891 C T CCKAR Missense_Mutation p.G110R 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 4 2695555 2695555 C - FAM193A Frame_Shift_Del p.P726Rfs*89 0.21 TCGA-L5-A8NM-01 4 3344181 3344181 C G RGS12 Intron 0.12 TCGA-L5-A8NM-01 4 36212182 36212182 T - ARAP2 Frame_Shift_Del p.A440Pfs*2 0.16 TCGA-L5-A8NM-01 4 36345167 36345167 C A DTHD1 Silent p.L689L 0.14 TCGA-L5-A8NM-01 4 37592205 37592205 A G C4orf19 Silent p.V176V 0.19 TCGA-L5-A8NM-01 4 38020002 38020002 A G TBC1D1 Missense_Mutation p.S304G 0.14 deleterious(0) possibly_damaging(0.505) TCGA-L5-A8NM-01 4 38690460 38690460 A - KLF3 Frame_Shift_Del p.K106Nfs*21 0.23 TCGA-L5-A8NM-01 4 39505575 39505575 T - UGDH Frame_Shift_Del p.M432Cfs*2 0.14 TCGA-L5-A8NM-01 4 40045118 40045118 C T RP11-333E13.4 RNA 0.23 TCGA-L5-A8NM-01 4 41747378 41747378 T - PHOX2B 3'UTR 0.21 TCGA-L5-A8NM-01 4 419621 419621 C T ABCA11P RNA 0.13 TCGA-L5-A8NM-01 4 41985270 41985270 C - DCAF4L1 3'UTR 0.13 TCGA-L5-A8NM-01 4 44449818 44449818 G A KCTD8 Silent p.I241I 0.22 TCGA-L5-A8NM-01 4 44450294 44450294 C T KCTD8 Missense_Mutation p.A83T 0.40 tolerated_low_confidence(0.18) benign(0.081) TCGA-L5-A8NM-01 4 46314639 46314639 A G GABRA2 Missense_Mutation p.M117T 0.33 deleterious(0) possibly_damaging(0.665) TCGA-L5-A8NM-01 4 46967130 46967130 A G GABRA4 Missense_Mutation p.F331L 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 4 48851983 48851983 C T OCIAD1 Silent p.Y87Y 0.28 TCGA-L5-A8NM-01 4 49063827 49063827 A T CWH43 Splice_Site p.X674_splice 0.38 TCGA-L5-A8NM-01 4 53462508 53462508 A G USP46 3'UTR 0.17 TCGA-L5-A8NM-01 4 54966885 54966885 C T GSX2 Missense_Mutation p.A125V 0.25 deleterious_low_confidence(0.04) benign(0.073) TCGA-L5-A8NM-01 4 5624385 5624385 C - EVC2 Frame_Shift_Del p.E794Rfs*13 0.17 TCGA-L5-A8NM-01 4 57181235 57181235 C T KIAA1211 Missense_Mutation p.R523W 0.43 deleterious(0) possibly_damaging(0.835) TCGA-L5-A8NM-01 4 57248651 57248652 - T AASDH Frame_Shift_Ins p.Q115Tfs*3 0.38 TCGA-L5-A8NM-01 4 57877007 57877007 T C POLR2B Missense_Mutation p.W548R 0.22 tolerated(0.35) probably_damaging(0.924) TCGA-L5-A8NM-01 4 5809991 5809991 C T EVC Silent p.H875H 0.28 TCGA-L5-A8NM-01 4 62067038 62067038 C T LPHN3 5'Flank 0.20 TCGA-L5-A8NM-01 4 65155449 65155449 A G TECRL Silent p.L271L 0.20 TCGA-L5-A8NM-01 4 65275089 65275089 G A TECRL 5'UTR 0.14 TCGA-L5-A8NM-01 4 66189745 66189745 T - EPHA5 3'UTR 0.16 TCGA-L5-A8NM-01 4 68780360 68780360 T C TMPRSS11A Missense_Mutation p.I350M 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 4 6883590 6883590 T G KIAA0232 3'UTR 0.13 TCGA-L5-A8NM-01 4 7056451 7056451 G A TADA2B Silent p.A311A 0.23 TCGA-L5-A8NM-01 4 73957694 73957694 G A ANKRD17 Missense_Mutation p.A1884V 0.08 benign(0.012) TCGA-L5-A8NM-01 4 74862440 74862440 G A CXCL5 3'UTR 0.18 TCGA-L5-A8NM-01 4 76407852 76407852 G A RCHY1 Nonsense_Mutation p.R228* 0.32 TCGA-L5-A8NM-01 4 76555329 76555329 G T CDKL2 5'UTR 0.18 TCGA-L5-A8NM-01 4 7725564 7725564 G T SORCS2 Missense_Mutation p.E855D 0.32 tolerated(0.09) probably_damaging(0.996) TCGA-L5-A8NM-01 4 7776485 7776485 C T AFAP1 Silent p.A681A 0.08 TCGA-L5-A8NM-01 4 81196142 81196142 A - FGF5 Frame_Shift_Del p.G148Efs*45 0.20 TCGA-L5-A8NM-01 4 82061765 82061765 A G PRKG2 Missense_Mutation p.I489T 0.15 deleterious(0) benign(0.038) TCGA-L5-A8NM-01 4 83582061 83582061 G T SCD5 Intron 0.31 TCGA-L5-A8NM-01 4 83847492 83847492 A G LIN54 3'UTR 0.17 TCGA-L5-A8NM-01 4 84374915 84374915 T C HELQ Missense_Mutation p.T161A 0.12 tolerated_low_confidence(0.6) benign(0.001) TCGA-L5-A8NM-01 4 8480090 8480090 T C TRMT44 3'Flank 0.23 TCGA-L5-A8NM-01 4 87735852 87735853 - A PTPN13 3'UTR 0.23 TCGA-L5-A8NM-01 4 90034766 90034766 G A TIGD2 Missense_Mutation p.C214Y 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 4 9785349 9785349 G C DRD5 3'UTR 0.32 TCGA-L5-A8NM-01 4 9785421 9785421 G T DRD5 3'UTR 0.16 TCGA-L5-A8NM-01 4 985263 985263 G A SLC26A1 Silent p.L77L 0.15 TCGA-L5-A8NM-01 4 9922179 9922179 C T SLC2A9 Missense_Mutation p.G278S 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-L5-A8NM-01 4 99363154 99363154 G A RAP1GDS1 Silent p.K571K 0.18 TCGA-L5-A8NM-01 4 99850471 99850471 A T EIF4E 5'Flank 0.30 TCGA-L5-A8NM-01 4 99982548 99982548 T - METAP1 3'UTR 0.18 TCGA-L5-A8NM-01 5 102611913 102611913 C T C5orf30 Missense_Mutation p.A98V 0.24 tolerated_low_confidence(1) benign(0.001) TCGA-L5-A8NM-01 5 10402530 10402530 G A MARCH6 Missense_Mutation p.R363H 0.11 tolerated(0.07) possibly_damaging(0.629) TCGA-L5-A8NM-01 5 109940905 109940905 T - TMEM232 Frame_Shift_Del p.N394Ifs*13 0.18 TCGA-L5-A8NM-01 5 111065659 111065659 T - NREP 3'Flank 0.18 TCGA-L5-A8NM-01 5 112478960 112478960 G A MCC Missense_Mutation p.A280V 0.16 deleterious(0) benign(0.371) TCGA-L5-A8NM-01 5 112889315 112889315 T G YTHDC2 Nonsense_Mutation p.Y632* 0.08 TCGA-L5-A8NM-01 5 114607065 114607065 G A CCDC112 Missense_Mutation p.R393C 0.31 deleterious(0) benign(0.173) TCGA-L5-A8NM-01 5 114858640 114858641 GA - FEM1C 3'UTR 0.40 TCGA-L5-A8NM-01 5 115152083 115152083 G A CDO1 Silent p.T4T 0.12 TCGA-L5-A8NM-01 5 115831945 115831945 A G SEMA6A Splice_Site p.X114_splice 0.11 TCGA-L5-A8NM-01 5 122950261 122950261 T C CSNK1G3 3'UTR 0.11 TCGA-L5-A8NM-01 5 127873181 127873181 C T FBN2 Missense_Mutation p.R39Q 0.14 tolerated_low_confidence(0.37) unknown(0) TCGA-L5-A8NM-01 5 131321105 131321105 G A ACSL6 Missense_Mutation p.T304M 0.24 deleterious(0) probably_damaging(0.987) TCGA-L5-A8NM-01 5 132151715 132151715 A G SOWAHA 3'UTR 0.17 TCGA-L5-A8NM-01 5 133726776 133726776 G T UBE2B 3'UTR 0.09 TCGA-L5-A8NM-01 5 133916116 133916116 C T JADE2 3'UTR 0.33 TCGA-L5-A8NM-01 5 134050782 134050782 C T SEC24A Silent p.N932N 0.13 TCGA-L5-A8NM-01 5 134347238 134347238 G A CATSPER3 Silent p.V374V 0.15 TCGA-L5-A8NM-01 5 134782253 134782253 A T C5orf20 Missense_Mutation p.D182E 0.11 deleterious_low_confidence(0) benign(0.004) TCGA-L5-A8NM-01 5 134870770 134870770 G A NEUROG1 Missense_Mutation p.A204V 0.11 tolerated(0.11) benign(0.268) TCGA-L5-A8NM-01 5 134871227 134871227 C T NEUROG1 Missense_Mutation p.A52T 0.17 tolerated(0.33) benign(0.002) TCGA-L5-A8NM-01 5 137495862 137495862 G A BRD8 Nonsense_Mutation p.Q810* 0.11 TCGA-L5-A8NM-01 5 137673882 137673882 C T FAM53C 5'UTR 0.17 TCGA-L5-A8NM-01 5 137801409 137801409 C - EGR1 5'UTR 0.32 TCGA-L5-A8NM-01 5 137909470 137909471 - GTT HSPA9 In_Frame_Ins p.M70delinsIT 0.17 TCGA-L5-A8NM-01 5 138266343 138266343 G A CTNNA1 Missense_Mutation p.R731Q 0.42 deleterious(0.03) probably_damaging(0.947) TCGA-L5-A8NM-01 5 13864702 13864702 A - DNAH5 Frame_Shift_Del p.L1467Wfs*3 0.12 TCGA-L5-A8NM-01 5 138728473 138728473 C A PROB1 Missense_Mutation p.Q766H 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.735) TCGA-L5-A8NM-01 5 139060907 139060907 G A CXXC5 Missense_Mutation p.A267T 0.17 tolerated(0.17) benign(0.245) TCGA-L5-A8NM-01 5 139062642 139062642 T - CXXC5 3'UTR 0.20 TCGA-L5-A8NM-01 5 140175608 140175608 G A PCDHA2 Silent p.T353T 0.34 TCGA-L5-A8NM-01 5 140209126 140209126 G A PCDHA6 Missense_Mutation p.A484T 0.12 tolerated_low_confidence(0.05) benign(0.335) TCGA-L5-A8NM-01 5 140215581 140215581 G A PCDHA7 Missense_Mutation p.R538H 0.30 deleterious_low_confidence(0.01) benign(0.214) TCGA-L5-A8NM-01 5 140229589 140229589 G A PCDHA9 Silent p.S503S 0.13 TCGA-L5-A8NM-01 5 140242596 140242596 C T AC005609.1 Missense_Mutation p.R127H 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.715) TCGA-L5-A8NM-01 5 140256353 140256353 G A PCDHA12 Silent p.S432S 0.26 TCGA-L5-A8NM-01 5 140256977 140256977 G A PCDHA12 Silent p.A640A 0.33 TCGA-L5-A8NM-01 5 140347009 140347009 G A PCDHAC2 Missense_Mutation p.A220T 0.18 tolerated(0.21) benign(0.002) TCGA-L5-A8NM-01 5 140537224 140537224 G A PCDHB17 Missense_Mutation p.V550M 0.10 deleterious_low_confidence(0.01) possibly_damaging(0.891) TCGA-L5-A8NM-01 5 140537455 140537455 G A PCDHB17 3'UTR 0.38 TCGA-L5-A8NM-01 5 140554465 140554465 G A PCDHB7 Silent p.S683S 0.05 TCGA-L5-A8NM-01 5 140559488 140559488 G A PCDHB8 Missense_Mutation p.V625M 0.10 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-L5-A8NM-01 5 140564786 140564786 T - PCDHB16 3'UTR 0.16 TCGA-L5-A8NM-01 5 140579984 140579984 T A PCDHB11 Missense_Mutation p.S213T 0.20 tolerated_low_confidence(1) benign(0) TCGA-L5-A8NM-01 5 140579998 140579998 T C PCDHB11 Silent p.G217G 0.19 TCGA-L5-A8NM-01 5 140580070 140580070 A G PCDHB11 Silent p.E241E 0.17 TCGA-L5-A8NM-01 5 140595476 140595476 G A PCDHB13 Missense_Mutation p.G594D 0.10 tolerated_low_confidence(0.06) possibly_damaging(0.66) TCGA-L5-A8NM-01 5 140603942 140603942 C T PCDHB14 Missense_Mutation p.R289C 0.25 tolerated_low_confidence(0.11) probably_damaging(0.988) TCGA-L5-A8NM-01 5 140604226 140604226 C T PCDHB14 Silent p.C383C 0.15 TCGA-L5-A8NM-01 5 140626524 140626524 G A PCDHB15 Missense_Mutation p.V460I 0.20 tolerated_low_confidence(0.16) benign(0.066) TCGA-L5-A8NM-01 5 140724854 140724854 T A PCDHGA3 Nonsense_Mutation p.Y418* 0.21 TCGA-L5-A8NM-01 5 140725964 140725964 C T PCDHGA3 Silent p.S788S 0.23 TCGA-L5-A8NM-01 5 140731905 140731905 C T PCDHGB1 Missense_Mutation p.A693V 0.29 deleterious(0.04) possibly_damaging(0.706) TCGA-L5-A8NM-01 5 140735562 140735562 A G PCDHGA4 Silent p.K265K 0.31 TCGA-L5-A8NM-01 5 140751606 140751606 C T PCDHGB3 Missense_Mutation p.R549C 0.25 deleterious(0.01) possibly_damaging(0.573) TCGA-L5-A8NM-01 5 140855581 140855581 T A PCDHGC3 5'UTR 0.19 TCGA-L5-A8NM-01 5 140856435 140856435 C T PCDHGC3 Missense_Mutation p.A251V 0.15 tolerated(1) benign(0.038) TCGA-L5-A8NM-01 5 140870295 140870295 T A PCDHGC5 Missense_Mutation p.N496K 0.21 tolerated(0.14) benign(0.032) TCGA-L5-A8NM-01 5 140894714 140894714 C T DIAPH1 3'UTR 0.35 TCGA-L5-A8NM-01 5 141005623 141005623 C T HDAC3 Silent p.S312S 0.17 TCGA-L5-A8NM-01 5 141028581 141028581 G A FCHSD1 Silent p.N173N 0.15 TCGA-L5-A8NM-01 5 14368970 14368970 G A TRIO Missense_Mutation p.V1010I 0.14 possibly_damaging(0.692) TCGA-L5-A8NM-01 5 145719506 145719506 C T POU4F3 Silent p.A172A 0.12 TCGA-L5-A8NM-01 5 147023707 147023707 G A JAKMIP2 Missense_Mutation p.L380F 0.17 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NM-01 5 14711209 14711209 A - ANKH 3'UTR 0.35 TCGA-L5-A8NM-01 5 147649640 147649640 C A SPINK13 Missense_Mutation p.A2D 0.16 deleterious_low_confidence(0.01) benign(0.3) TCGA-L5-A8NM-01 5 148427444 148427444 T C SH3TC2 Missense_Mutation p.E87G 0.17 tolerated(0.06) benign(0.008) TCGA-L5-A8NM-01 5 148712387 148712387 C T AFAP1L1 Missense_Mutation p.A702V 0.20 deleterious(0) probably_damaging(0.984) TCGA-L5-A8NM-01 5 148747925 148747925 C - PCYOX1L Frame_Shift_Del p.K400Sfs*8 0.12 TCGA-L5-A8NM-01 5 148754055 148754055 G A IL17B Silent p.S140S 0.27 TCGA-L5-A8NM-01 5 148875718 148875718 T C CSNK1A1 3'Flank 0.11 TCGA-L5-A8NM-01 5 149624735 149624735 C T CAMK2A Missense_Mutation p.D325N 0.29 tolerated_low_confidence(0.1) possibly_damaging(0.783) TCGA-L5-A8NM-01 5 150028878 150028878 C T SYNPO Silent p.S591S 0.25 TCGA-L5-A8NM-01 5 150407813 150407813 G T GPX3 3'UTR 0.17 TCGA-L5-A8NM-01 5 150885626 150885626 T C FAT2 Missense_Mutation p.T4184A 0.12 benign(0.001) TCGA-L5-A8NM-01 5 150923671 150923671 A G FAT2 Silent p.Y2339Y 0.15 TCGA-L5-A8NM-01 5 153796475 153796475 G A GALNT10 Silent p.Q585Q 0.06 TCGA-L5-A8NM-01 5 157236721 157236721 G T CLINT1 Missense_Mutation p.L204M 0.11 deleterious(0.03) possibly_damaging(0.534) TCGA-L5-A8NM-01 5 158204526 158204526 G A EBF1 Missense_Mutation p.R311C 0.37 deleterious(0) possibly_damaging(0.89) TCGA-L5-A8NM-01 5 160717933 160717933 C T GABRB2 3'UTR 0.17 TCGA-L5-A8NM-01 5 167957293 167957293 G A FBLL1 Missense_Mutation p.A262T 0.23 deleterious(0) probably_damaging(0.961) TCGA-L5-A8NM-01 5 168123370 168123372 GTT - SLIT3 In_Frame_Del p.N1003del 0.23 TCGA-L5-A8NM-01 5 169484630 169484630 C T DOCK2 Missense_Mutation p.P1476L 0.16 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 5 169533184 169533184 T C FOXI1 Missense_Mutation p.Y75H 0.09 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 5 169697818 169697818 G T LCP2 Missense_Mutation p.A143E 0.16 tolerated(0.26) benign(0.373) TCGA-L5-A8NM-01 5 170736463 170736463 G T TLX3 Missense_Mutation p.A32S 0.27 tolerated(0.82) benign(0) TCGA-L5-A8NM-01 5 171295620 171295620 C T FBXW11 3'UTR 0.38 TCGA-L5-A8NM-01 5 173383454 173383454 A C CPEB4 3'UTR 0.31 TCGA-L5-A8NM-01 5 174869161 174869161 G A DRD1 Silent p.D314D 0.41 TCGA-L5-A8NM-01 5 175306035 175306035 C T CPLX2 Silent p.H52H 0.31 TCGA-L5-A8NM-01 5 175308160 175308160 G T CPLX2 3'UTR 0.23 TCGA-L5-A8NM-01 5 175795902 175795902 C T ARL10 Missense_Mutation p.R160W 0.18 deleterious(0) benign(0.396) TCGA-L5-A8NM-01 5 175959157 175959157 G A RNF44 Missense_Mutation p.R49W 0.29 deleterious_low_confidence(0) benign(0.209) TCGA-L5-A8NM-01 5 176918059 176918059 G A PDLIM7 Nonsense_Mutation p.Q163* 0.20 TCGA-L5-A8NM-01 5 177099156 177099156 C T RP11-1277A3.2 5'Flank 0.29 TCGA-L5-A8NM-01 5 178580515 178580515 G T ADAMTS2 Missense_Mutation p.L498M 0.20 tolerated(0.06) benign(0.313) TCGA-L5-A8NM-01 5 178699931 178699931 C - ADAMTS2 Frame_Shift_Del p.P224Hfs*23 0.15 TCGA-L5-A8NM-01 5 179071902 179071902 G A C5orf60 Silent p.F40F 0.09 TCGA-L5-A8NM-01 5 179203166 179203166 C T MAML1 3'UTR 0.17 TCGA-L5-A8NM-01 5 179225976 179225976 G A MGAT4B Missense_Mutation p.A447V 0.28 deleterious(0.04) benign(0.079) TCGA-L5-A8NM-01 5 179264366 179264366 C T SQSTM1 3'UTR 0.29 TCGA-L5-A8NM-01 5 179691803 179691803 T - MAPK9 Frame_Shift_Del p.T97Lfs*2 0.25 TCGA-L5-A8NM-01 5 180035242 180035242 A G FLT4 Intron 0.39 TCGA-L5-A8NM-01 5 180038335 180038335 C T FLT4 Missense_Mutation p.A1228T 0.11 tolerated(0.48) benign(0.005) TCGA-L5-A8NM-01 5 180050970 180050970 C T FLT4 Missense_Mutation p.D505N 0.13 deleterious(0.03) probably_damaging(0.981) TCGA-L5-A8NM-01 5 180630477 180630477 C T TRIM7 Intron 0.22 TCGA-L5-A8NM-01 5 180652113 180652113 T C TRIM41 Intron 0.25 TCGA-L5-A8NM-01 5 1878502 1878502 C T IRX4 Missense_Mutation p.A381T 0.21 tolerated(0.15) benign(0) TCGA-L5-A8NM-01 5 19483637 19483638 - T CDH18 Frame_Shift_Ins p.R552Kfs*6 0.22 TCGA-L5-A8NM-01 5 26880965 26880965 A G CDH9 3'UTR 0.22 TCGA-L5-A8NM-01 5 31983543 31983543 C T PDZD2 Silent p.G253G 0.20 TCGA-L5-A8NM-01 5 33448779 33448779 A G TARS Missense_Mutation p.K91E 0.25 tolerated(0.06) benign(0.111) TCGA-L5-A8NM-01 5 35779244 35779244 C T SPEF2 Missense_Mutation p.R1415C 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-L5-A8NM-01 5 36985453 36985453 C - NIPBL Frame_Shift_Del p.P725Qfs*69 0.20 TCGA-L5-A8NM-01 5 37224365 37224365 G T C5orf42 Silent p.I857I 0.18 TCGA-L5-A8NM-01 5 38418270 38418270 G T EGFLAM Missense_Mutation p.G533C 0.16 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 5 38464038 38464038 G A EGFLAM Missense_Mutation p.V1002M 0.19 deleterious(0.02) probably_damaging(0.938) TCGA-L5-A8NM-01 5 38938201 38938201 A G RICTOR 3'UTR 0.23 TCGA-L5-A8NM-01 5 39153687 39153687 C T FYB Silent p.T395T 0.14 TCGA-L5-A8NM-01 5 39364641 39364641 G T C9 5'UTR 0.14 TCGA-L5-A8NM-01 5 50690053 50690053 T - ISL1 3'UTR 0.15 TCGA-L5-A8NM-01 5 52097435 52097435 G A PELO Missense_Mutation p.A307T 0.20 deleterious(0) probably_damaging(0.994) TCGA-L5-A8NM-01 5 52394449 52394449 A - MOCS2 Frame_Shift_Del p.W184Gfs*11 0.18 TCGA-L5-A8NM-01 5 54274524 54274524 G A ESM1 3'UTR 0.21 TCGA-L5-A8NM-01 5 5486837 5486837 G A KIAA0947 Missense_Mutation p.R2175H 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 5 55008154 55008154 G A SLC38A9 5'UTR 0.15 TCGA-L5-A8NM-01 5 56177702 56177702 A G MAP3K1 Missense_Mutation p.N892S 0.21 tolerated_low_confidence(0.51) benign(0.002) TCGA-L5-A8NM-01 5 65475195 65475195 C T SREK1 3'UTR 0.27 TCGA-L5-A8NM-01 5 66445362 66445362 G A MAST4 Silent p.S1080S 0.13 TCGA-L5-A8NM-01 5 67594741 67594741 G - PIK3R1 3'UTR 0.16 TCGA-L5-A8NM-01 5 68398896 68398896 T - SLC30A5 Frame_Shift_Del p.F73Lfs*47 0.22 TCGA-L5-A8NM-01 5 72208126 72208126 T - TNPO1 3'UTR 0.20 TCGA-L5-A8NM-01 5 75967685 75967685 G A IQGAP2 Missense_Mutation p.R982H 0.26 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 5 76934382 76934382 C T OTP 5'UTR 0.23 TCGA-L5-A8NM-01 5 78426942 78426942 T C BHMT 3'UTR 0.26 TCGA-L5-A8NM-01 5 78532529 78532529 A G JMY Missense_Mutation p.H19R 0.15 tolerated(0.08) possibly_damaging(0.734) TCGA-L5-A8NM-01 5 78908317 78908317 T - PAPD4 5'UTR 0.10 TCGA-L5-A8NM-01 5 79855769 79855769 G A ANKRD34B Missense_Mutation p.R24C 0.34 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 5 86669996 86669996 T C RASA1 Missense_Mutation p.L598S 0.13 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 5 86675607 86675607 T C RASA1 Missense_Mutation p.L848P 0.15 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NM-01 5 88017644 88017644 A - MEF2C 3'UTR 0.23 TCGA-L5-A8NM-01 5 89689766 89689766 T - CETN3 3'UTR 0.17 TCGA-L5-A8NM-01 5 89701581 89701581 T - CETN3 Frame_Shift_Del p.A64Lfs*4 0.15 TCGA-L5-A8NM-01 5 89939702 89939702 C T GPR98 Missense_Mutation p.T879M 0.28 probably_damaging(0.93) TCGA-L5-A8NM-01 5 90119242 90119242 G A GPR98 Silent p.R5399R 0.24 TCGA-L5-A8NM-01 5 9042866 9042866 G A SEMA5A 3'UTR 0.19 TCGA-L5-A8NM-01 5 94050578 94050578 T - MCTP1 Frame_Shift_Del p.K875Rfs*4 0.18 TCGA-L5-A8NM-01 5 94859450 94859450 C T TTC37 Missense_Mutation p.R514H 0.30 deleterious(0.01) probably_damaging(0.932) TCGA-L5-A8NM-01 5 95129228 95129228 T A RHOBTB3 3'UTR 0.16 TCGA-L5-A8NM-01 5 98194002 98194002 G A CHD1 Missense_Mutation p.H1557Y 0.23 tolerated(0.76) benign(0.062) TCGA-L5-A8NM-01 5 98210788 98210788 C T CHD1 Missense_Mutation p.G1143D 0.33 tolerated(0.51) benign(0.009) TCGA-L5-A8NM-01 6 100062377 100062377 G A PRDM13 Silent p.L622L 0.25 TCGA-L5-A8NM-01 6 102516697 102516697 T - GRIK2 3'UTR 0.10 TCGA-L5-A8NM-01 6 10412496 10412496 G A TFAP2A Intron 0.09 TCGA-L5-A8NM-01 6 105526529 105526529 G T LIN28B Missense_Mutation p.Q208H 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.541) TCGA-L5-A8NM-01 6 10557097 10557097 C T GCNT2 Intron 0.19 TCGA-L5-A8NM-01 6 10764373 10764373 T - MAK 3'UTR 0.58 TCGA-L5-A8NM-01 6 108478898 108478898 A G OSTM1-AS1 RNA 0.09 TCGA-L5-A8NM-01 6 108882886 108882886 A C FOXO3 Missense_Mutation p.N159H 0.27 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NM-01 6 109767434 109767434 G T MICAL1 Missense_Mutation p.P829H 0.25 deleterious(0) possibly_damaging(0.664) TCGA-L5-A8NM-01 6 109830572 109830572 T - AK9 Frame_Shift_Del p.I1431Lfs*7 0.21 TCGA-L5-A8NM-01 6 110426610 110426610 C T WASF1 Missense_Mutation p.R238K 0.21 tolerated(0.41) unknown(0) TCGA-L5-A8NM-01 6 111587126 111587126 C T KIAA1919 Missense_Mutation p.H121Y 0.30 tolerated(0.15) benign(0.017) TCGA-L5-A8NM-01 6 11191156 11191156 C T NEDD9 Missense_Mutation p.A316T 0.09 deleterious(0.02) benign(0.281) TCGA-L5-A8NM-01 6 11538571 11538571 C A TMEM170B Missense_Mutation p.L21I 0.12 deleterious(0.01) benign(0.255) TCGA-L5-A8NM-01 6 116440908 116440908 T - COL10A1 3'UTR 0.20 TCGA-L5-A8NM-01 6 117002449 117002449 C - KPNA5 5'UTR 0.17 TCGA-L5-A8NM-01 6 117253235 117253235 C T RFX6 3'UTR 0.27 TCGA-L5-A8NM-01 6 11778984 11778984 C A ADTRP Missense_Mutation p.K3N 0.33 tolerated(0.08) possibly_damaging(0.535) TCGA-L5-A8NM-01 6 118031074 118031074 T - NUS1 3'UTR 0.43 TCGA-L5-A8NM-01 6 118637736 118637736 C T SLC35F1 3'UTR 0.33 TCGA-L5-A8NM-01 6 121563364 121563364 A G TBC1D32 Missense_Mutation p.Y714H 0.19 tolerated(0.08) probably_damaging(0.967) TCGA-L5-A8NM-01 6 125146685 125146685 T - NKAIN2 3'UTR 0.26 TCGA-L5-A8NM-01 6 126070818 126070818 G A HEY2 5'UTR 0.20 TCGA-L5-A8NM-01 6 126252045 126252046 - A NCOA7 3'UTR 0.38 TCGA-L5-A8NM-01 6 127609124 127609124 G A RNF146 3'UTR 0.31 TCGA-L5-A8NM-01 6 13185122 13185122 A C PHACTR1 Missense_Mutation p.K138N 0.11 tolerated(0.1) benign(0.014) TCGA-L5-A8NM-01 6 134308784 134308784 G A TBPL1 3'UTR 0.21 TCGA-L5-A8NM-01 6 134327992 134327992 C T SLC2A12 Missense_Mutation p.G509S 0.17 deleterious(0.04) benign(0.438) TCGA-L5-A8NM-01 6 136513673 136513673 C T PDE7B 3'UTR 0.23 TCGA-L5-A8NM-01 6 136847057 136847059 TCT - MAP7 In_Frame_Del p.K15del 0.16 TCGA-L5-A8NM-01 6 137814989 137814989 G A OLIG3 Missense_Mutation p.R107C 0.25 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 6 139094843 139094843 G T CCDC28A Missense_Mutation p.G11V 0.12 tolerated_low_confidence(0.26) benign(0) TCGA-L5-A8NM-01 6 144806531 144806531 C A UTRN Missense_Mutation p.S1233Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 6 145149930 145149930 G A UTRN Missense_Mutation p.A3202T 0.08 deleterious(0.03) probably_damaging(0.978) TCGA-L5-A8NM-01 6 146720324 146720324 C A GRM1 Missense_Mutation p.Q717K 0.40 deleterious(0) probably_damaging(0.95) TCGA-L5-A8NM-01 6 148711274 148711274 G A SASH1 Missense_Mutation p.G54D 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A8NM-01 6 150141774 150141774 G A LRP11 Nonsense_Mutation p.R472* 0.18 TCGA-L5-A8NM-01 6 152826487 152826487 G A SYNE1 Silent p.S209S 0.41 TCGA-L5-A8NM-01 6 154411172 154411172 T C OPRM1 Missense_Mutation p.Y261H 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 6 15513159 15513159 G A JARID2 Missense_Mutation p.R1050H 0.17 deleterious(0.02) possibly_damaging(0.855) TCGA-L5-A8NM-01 6 157527517 157527517 G A ARID1B Missense_Mutation p.E1748K 0.23 benign(0.229) TCGA-L5-A8NM-01 6 159653589 159653589 G A FNDC1 Missense_Mutation p.R682H 0.10 tolerated_low_confidence(0.11) unknown(0) TCGA-L5-A8NM-01 6 160113437 160113437 C T SOD2 Intron 0.28 TCGA-L5-A8NM-01 6 160170298 160170298 T - WTAP Intron 0.13 TCGA-L5-A8NM-01 6 160202059 160202059 T A TCP1 Missense_Mutation p.D294V 0.11 deleterious(0) probably_damaging(0.989) TCGA-L5-A8NM-01 6 161132169 161132170 - A PLG Frame_Shift_Ins p.N120Kfs*17 0.12 TCGA-L5-A8NM-01 6 163149330 163149330 C A PACRG Silent p.T21T 0.14 TCGA-L5-A8NM-01 6 163987694 163987695 - T QKI Intron 0.15 TCGA-L5-A8NM-01 6 166889308 166889308 G A RPS6KA2 Intron 0.18 TCGA-L5-A8NM-01 6 168347574 168347574 C T MLLT4 Silent p.N1175N 0.08 TCGA-L5-A8NM-01 6 169634947 169634947 G A THBS2 Silent p.A511A 0.14 TCGA-L5-A8NM-01 6 169639773 169639773 G A THBS2 Silent p.C350C 0.12 TCGA-L5-A8NM-01 6 17788023 17788023 T - KIF13A Frame_Shift_Del p.V1116Sfs*23 0.17 TCGA-L5-A8NM-01 6 18122226 18122226 A - NHLRC1 Frame_Shift_Del p.F204Lfs*28 0.12 TCGA-L5-A8NM-01 6 18223467 18223467 T C KDM1B 3'UTR 0.10 TCGA-L5-A8NM-01 6 19840605 19840605 A - ID4 3'UTR 0.19 TCGA-L5-A8NM-01 6 20493794 20493799 AAAAAC - E2F3 3'UTR 0.24 TCGA-L5-A8NM-01 6 28268581 28268581 G A PGBD1 Missense_Mutation p.R317H 0.31 tolerated_low_confidence(0.26) benign(0.001) TCGA-L5-A8NM-01 6 29942912 29942912 C T HCG9 RNA 0.29 TCGA-L5-A8NM-01 6 30128469 30128469 G A TRIM10 Missense_Mutation p.T56I 0.33 tolerated(0.27) benign(0.006) TCGA-L5-A8NM-01 6 30545224 30545224 A - ABCF1 Frame_Shift_Del p.T40Rfs*8 0.09 TCGA-L5-A8NM-01 6 30917619 30917619 C T DPCR1 Missense_Mutation p.P460S 0.14 tolerated(0.87) benign(0.001) TCGA-L5-A8NM-01 6 31084700 31084700 G T CDSN Missense_Mutation p.P231H 0.13 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NM-01 6 31132949 31132949 G A POU5F1 Nonsense_Mutation p.Q258* 0.18 TCGA-L5-A8NM-01 6 31239045 31239045 A G HLA-C Missense_Mutation p.Y142H 0.18 deleterious_low_confidence(0) probably_damaging(1) TCGA-L5-A8NM-01 6 31239628 31239628 A G HLA-C Missense_Mutation p.Y31H 0.13 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A8NM-01 6 31515510 31515510 C A NFKBIL1 Silent p.A13A 0.12 TCGA-L5-A8NM-01 6 31743902 31743902 G A VWA7 Missense_Mutation p.P118S 0.20 tolerated(0.61) benign(0.011) TCGA-L5-A8NM-01 6 31749717 31749717 G A VARS Missense_Mutation p.R752W 0.10 deleterious(0) possibly_damaging(0.773) TCGA-L5-A8NM-01 6 31777815 31777816 - A HSPA1L 3'UTR 0.17 TCGA-L5-A8NM-01 6 31868164 31868164 C - ZBTB12 Frame_Shift_Del p.A307Rfs*24 0.31 TCGA-L5-A8NM-01 6 32010327 32010327 C T TNXB Missense_Mutation p.G468S 0.26 tolerated(0.46) benign(0.089) TCGA-L5-A8NM-01 6 32030199 32030199 G - TNXB Frame_Shift_Del p.I2302Sfs*8 0.19 TCGA-L5-A8NM-01 6 32095989 32095989 C - ATF6B 5'UTR 0.23 TCGA-L5-A8NM-01 6 32152619 32152619 C - PBX2 3'UTR 0.40 TCGA-L5-A8NM-01 6 33164130 33164130 G - RXRB Intron 0.30 TCGA-L5-A8NM-01 6 33263886 33263886 G A RGL2 Silent p.P229P 0.31 TCGA-L5-A8NM-01 6 33272310 33272310 C T TAPBP Missense_Mutation p.G325D 0.13 tolerated(0.32) benign(0.147) TCGA-L5-A8NM-01 6 33374231 33374231 C T KIFC1 Silent p.L599L 0.25 TCGA-L5-A8NM-01 6 33651920 33651920 T C ITPR3 Missense_Mutation p.C1638R 0.09 deleterious(0) possibly_damaging(0.866) TCGA-L5-A8NM-01 6 33703273 33703273 G - IP6K3 5'UTR 0.27 TCGA-L5-A8NM-01 6 34059793 34059793 C T GRM4 Silent p.S201S 0.25 TCGA-L5-A8NM-01 6 34831896 34831896 A G UHRF1BP1 Silent p.S1111S 0.18 TCGA-L5-A8NM-01 6 35205687 35205687 G A SCUBE3 Missense_Mutation p.A241T 0.13 deleterious(0.04) benign(0.391) TCGA-L5-A8NM-01 6 35213121 35213121 C T SCUBE3 Missense_Mutation p.R840C 0.36 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 6 35259168 35259168 C T ZNF76 Missense_Mutation p.R247C 0.35 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NM-01 6 35287364 35287364 C T DEF6 Missense_Mutation p.R427C 0.16 deleterious(0) possibly_damaging(0.876) TCGA-L5-A8NM-01 6 35754851 35754851 C T CLPSL1 Missense_Mutation p.S59L 0.09 tolerated(0.11) benign(0.104) TCGA-L5-A8NM-01 6 36926976 36926976 G - PI16 Frame_Shift_Del p.G77Afs*95 0.23 TCGA-L5-A8NM-01 6 37605120 37605120 G - MDGA1 3'UTR 0.21 TCGA-L5-A8NM-01 6 38652183 38652183 G A GLO1 Missense_Mutation p.A92V 0.32 tolerated(0.42) benign(0.001) TCGA-L5-A8NM-01 6 401645 401645 G A IRF4 Missense_Mutation p.G323R 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 6 4052975 4052975 A - PRPF4B Frame_Shift_Del p.K780Nfs*13 0.15 TCGA-L5-A8NM-01 6 43147698 43147698 T - SRF 3'UTR 0.23 TCGA-L5-A8NM-01 6 43221342 43221342 C T TTBK1 Nonsense_Mutation p.R123* 0.15 TCGA-L5-A8NM-01 6 43250473 43250473 C T TTBK1 Silent p.S665S 0.32 TCGA-L5-A8NM-01 6 43251751 43251751 G A TTBK1 Silent p.R1091R 0.43 TCGA-L5-A8NM-01 6 43419705 43419705 C T DLK2 Missense_Mutation p.R130H 0.43 tolerated(0.16) possibly_damaging(0.568) TCGA-L5-A8NM-01 6 43538375 43538375 T G XPO5 Missense_Mutation p.E162A 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 6 44221447 44221447 T - HSP90AB1 3'UTR 0.27 TCGA-L5-A8NM-01 6 44279178 44279178 T G AARS2 Missense_Mutation p.K177T 0.18 tolerated(0.25) benign(0.186) TCGA-L5-A8NM-01 6 46657580 46657580 G A TDRD6 Missense_Mutation p.R572Q 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-L5-A8NM-01 6 50016318 50016318 T C DEFB112 Missense_Mutation p.Y16C 0.10 tolerated(0.06) possibly_damaging(0.759) TCGA-L5-A8NM-01 6 50681584 50681584 T - TFAP2D 5'UTR 0.17 TCGA-L5-A8NM-01 6 52658946 52658946 G A GSTA1 Missense_Mutation p.R131C 0.15 deleterious(0.03) probably_damaging(0.988) TCGA-L5-A8NM-01 6 55145211 55145211 T C HCRTR2 Silent p.A358A 0.15 TCGA-L5-A8NM-01 6 64394560 64394560 A T PHF3 Missense_Mutation p.I313L 0.12 tolerated_low_confidence(0.34) benign(0.003) TCGA-L5-A8NM-01 6 64430615 64430615 A G EYS Silent p.F3104F 0.30 TCGA-L5-A8NM-01 6 65336092 65336092 C T EYS Missense_Mutation p.E1164K 0.15 deleterious(0.04) probably_damaging(0.981) TCGA-L5-A8NM-01 6 70992786 70992786 G A COL9A1 Intron 0.28 TCGA-L5-A8NM-01 6 71570123 71570124 - T SMAP1 3'UTR 0.14 TCGA-L5-A8NM-01 6 72596814 72596814 G A RIMS1 Missense_Mutation p.E30K 0.12 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NM-01 6 72892166 72892166 C T RIMS1 Missense_Mutation p.P331L 0.11 tolerated(0.18) possibly_damaging(0.564) TCGA-L5-A8NM-01 6 7398932 7398932 T A RIOK1 Missense_Mutation p.Y147N 0.11 tolerated(0.07) possibly_damaging(0.786) TCGA-L5-A8NM-01 6 74111695 74111696 - A DDX43 Frame_Shift_Ins p.T186Nfs*10 0.28 TCGA-L5-A8NM-01 6 7574376 7574376 C A DSP Missense_Mutation p.L730I 0.34 possibly_damaging(0.621) TCGA-L5-A8NM-01 6 75798824 75798824 G - COL12A1 Frame_Shift_Del p.P3003Qfs*74 0.27 TCGA-L5-A8NM-01 6 75866088 75866088 G - COL12A1 Frame_Shift_Del p.T1046Qfs*7 0.34 TCGA-L5-A8NM-01 6 76018573 76018573 C T FILIP1 Missense_Mutation p.R1159H 0.20 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 6 79912054 79912054 T C HMGN3 Missense_Mutation p.K67R 0.12 deleterious(0.03) possibly_damaging(0.874) TCGA-L5-A8NM-01 6 82935221 82935221 C A IBTK Silent p.P266P 0.19 TCGA-L5-A8NM-01 6 83074669 83074669 G A TPBG 5'UTR 0.38 TCGA-L5-A8NM-01 6 87966811 87966812 - T ZNF292 Frame_Shift_Ins p.L1157Ffs*64 0.19 TCGA-L5-A8NM-01 6 88411208 88411208 C A AKIRIN2 Missense_Mutation p.E65D 0.36 tolerated(0.19) benign(0.078) TCGA-L5-A8NM-01 6 90121614 90121614 G A RRAGD Silent p.D33D 0.32 TCGA-L5-A8NM-01 6 90333705 90333705 C - ANKRD6 Frame_Shift_Del p.P384Hfs*21 0.29 TCGA-L5-A8NM-01 6 93964433 93964433 A G EPHA7 Missense_Mutation p.Y822H 0.07 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NM-01 6 97676826 97676826 T A MMS22L Silent p.R661R 0.15 TCGA-L5-A8NM-01 6 99848584 99848584 T - PNISR Frame_Shift_Del p.K750Nfs*71 0.17 TCGA-L5-A8NM-01 7 100016812 100016812 C A ZCWPW1 Nonsense_Mutation p.E95* 0.21 TCGA-L5-A8NM-01 7 100205580 100205580 G T PCOLCE Missense_Mutation p.G402C 0.23 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 7 100488037 100488037 G - ACHE 3'UTR 0.40 TCGA-L5-A8NM-01 7 101187370 101187370 G A COL26A1 Silent p.G232G 0.14 TCGA-L5-A8NM-01 7 101194404 101194404 C T COL26A1 Nonsense_Mutation p.R337* 0.14 TCGA-L5-A8NM-01 7 103137131 103137131 G A RELN Missense_Mutation p.A3012V 0.12 deleterious(0.03) possibly_damaging(0.595) TCGA-L5-A8NM-01 7 103629675 103629675 G A RELN Silent p.H43H 0.16 TCGA-L5-A8NM-01 7 104756826 104756826 A - SRPK2 3'UTR 0.47 TCGA-L5-A8NM-01 7 111967771 111967771 G T ZNF277 Splice_Site p.X186_splice 0.16 TCGA-L5-A8NM-01 7 1133014 1133014 G A GPER1 3'UTR 0.20 TCGA-L5-A8NM-01 7 116596663 116596663 G - ST7-OT4 Frame_Shift_Del p.G87Dfs*5 0.16 TCGA-L5-A8NM-01 7 120606729 120606729 T C ING3 Silent p.A138A 0.09 TCGA-L5-A8NM-01 7 122001047 122001047 G A CADPS2 Silent p.G1136G 0.29 TCGA-L5-A8NM-01 7 127240252 127240252 G - FSCN3 Frame_Shift_Del p.G434Dfs*6 0.13 TCGA-L5-A8NM-01 7 129395150 129395150 A T NRF1 3'UTR 0.25 TCGA-L5-A8NM-01 7 129474308 129474308 C - UBE2H 3'UTR 0.25 TCGA-L5-A8NM-01 7 131176678 131176678 A - MKLN1 3'UTR 0.36 TCGA-L5-A8NM-01 7 131912284 131912284 C A PLXNA4 Missense_Mutation p.G603V 0.41 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NM-01 7 134678279 134678280 AC - AGBL3 Frame_Shift_Del p.Q55Dfs*16 0.15 TCGA-L5-A8NM-01 7 136701472 136701473 - A CHRM2 3'UTR 0.34 TCGA-L5-A8NM-01 7 137559890 137559890 C T CREB3L2 3'UTR 0.14 TCGA-L5-A8NM-01 7 137564004 137564004 G T CREB3L2 3'UTR 0.38 TCGA-L5-A8NM-01 7 138356801 138356801 C A SVOPL Missense_Mutation p.W79L 0.22 deleterious(0) probably_damaging(0.989) TCGA-L5-A8NM-01 7 138665892 138665892 G A KIAA1549 Missense_Mutation p.P42S 0.40 tolerated_low_confidence(0.44) benign(0.001) TCGA-L5-A8NM-01 7 141899767 141899767 T C RP11-1220K2.2 Silent p.I1712I 0.11 TCGA-L5-A8NM-01 7 141920622 141920624 CTT - RP11-1220K2.2 In_Frame_Del p.S2105del 0.36 TCGA-L5-A8NM-01 7 142250821 142250821 T C TRBV6-4 Missense_Mutation p.K76E 0.28 tolerated(0.12) benign(0.101) TCGA-L5-A8NM-01 7 142583308 142583308 C A TRPV6 5'UTR 0.33 TCGA-L5-A8NM-01 7 143826931 143826931 C T OR2A14 Silent p.S242S 0.26 TCGA-L5-A8NM-01 7 148480914 148480914 A - CUL1 Frame_Shift_Del p.K376Nfs*6 0.17 TCGA-L5-A8NM-01 7 148702314 148702314 C T PDIA4 Missense_Mutation p.E481K 0.12 tolerated(0.4) benign(0.012) TCGA-L5-A8NM-01 7 148895518 148895518 C T ZNF282 Nonsense_Mutation p.R87* 0.24 TCGA-L5-A8NM-01 7 149171653 149171653 C T ZNF746 Missense_Mutation p.R587H 0.17 deleterious(0.04) probably_damaging(0.984) TCGA-L5-A8NM-01 7 149462116 149462116 C T ZNF467 Missense_Mutation p.C492Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 7 149484529 149484529 G A SSPO RNA 0.10 TCGA-L5-A8NM-01 7 149572717 149572717 C T ATP6V0E2 Silent p.A94A 0.10 TCGA-L5-A8NM-01 7 150417407 150417407 C T GIMAP1 Silent p.Y105Y 0.08 TCGA-L5-A8NM-01 7 150693865 150693865 C T NOS3 Missense_Mutation p.A145V 0.18 deleterious(0.02) possibly_damaging(0.594) TCGA-L5-A8NM-01 7 150772273 150772273 C T SLC4A2 Intron 0.19 TCGA-L5-A8NM-01 7 150820483 150820483 G A AGAP3 Intron 0.19 TCGA-L5-A8NM-01 7 150936201 150936201 C T SMARCD3 Silent p.V480V 0.17 TCGA-L5-A8NM-01 7 151680108 151680108 G A GALNTL5 Missense_Mutation p.A136T 0.15 tolerated(0.06) probably_damaging(1) TCGA-L5-A8NM-01 7 151882652 151882652 T C KMT2C Silent p.A1691A 0.32 TCGA-L5-A8NM-01 7 152549324 152549324 C T ACTR3B Silent p.G355G 0.18 TCGA-L5-A8NM-01 7 152550626 152550626 C T ACTR3B Silent p.Y375Y 0.26 TCGA-L5-A8NM-01 7 1533447 1533447 C T INTS1 Missense_Mutation p.D671N 0.14 deleterious(0) benign(0.336) TCGA-L5-A8NM-01 7 155504069 155504070 - T RBM33 Frame_Shift_Ins p.P375Afs*94 0.08 TCGA-L5-A8NM-01 7 156963108 156963109 - T UBE3C Frame_Shift_Ins p.Y105Lfs*5 0.25 TCGA-L5-A8NM-01 7 156994495 156994495 T C UBE3C Missense_Mutation p.I471T 0.19 deleterious(0.01) benign(0.343) TCGA-L5-A8NM-01 7 157208759 157208761 GAA - DNAJB6 In_Frame_Del p.K320del 0.32 TCGA-L5-A8NM-01 7 1585319 1585319 G - TMEM184A 3'UTR 0.26 TCGA-L5-A8NM-01 7 208908 208908 G - FAM20C Frame_Shift_Del p.G267Afs*4 0.16 TCGA-L5-A8NM-01 7 21646139 21646140 - A DNAH11 Frame_Shift_Ins p.C1251Mfs*5 0.09 TCGA-L5-A8NM-01 7 21947897 21947897 T - CDCA7L Frame_Shift_Del p.T178Qfs*12 0.15 TCGA-L5-A8NM-01 7 22767197 22767197 C T IL6 Nonsense_Mutation p.R52* 0.30 TCGA-L5-A8NM-01 7 23300127 23300127 C T GPNMB Silent p.S251S 0.15 TCGA-L5-A8NM-01 7 24718836 24718836 G T MPP6 Missense_Mutation p.A401S 0.10 tolerated(0.45) benign(0.05) TCGA-L5-A8NM-01 7 24932011 24932011 C T OSBPL3 Silent p.K27K 0.09 TCGA-L5-A8NM-01 7 2704153 2704153 C - TTYH3 3'UTR 0.29 TCGA-L5-A8NM-01 7 27204776 27204776 C G HOXA9 Missense_Mutation p.A101P 0.12 tolerated(0.33) possibly_damaging(0.604) TCGA-L5-A8NM-01 7 31682910 31682910 T C CCDC129 Silent p.C668C 0.32 TCGA-L5-A8NM-01 7 36445892 36445892 G A ANLN Missense_Mutation p.G197D 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 7 37251076 37251076 G A ELMO1 Missense_Mutation p.A334V 0.12 tolerated(0.42) benign(0.011) TCGA-L5-A8NM-01 7 43484922 43484922 G A HECW1 Silent p.T717T 0.30 TCGA-L5-A8NM-01 7 43846773 43846773 G A BLVRA Missense_Mutation p.R277H 0.18 tolerated(0.05) benign(0.341) TCGA-L5-A8NM-01 7 47408140 47408140 C T TNS3 Silent p.Q701Q 0.11 TCGA-L5-A8NM-01 7 4802613 4802614 AG - FOXK1 3'UTR 0.16 TCGA-L5-A8NM-01 7 48392078 48392078 G A ABCA13 Missense_Mutation p.S3561N 0.15 probably_damaging(0.932) TCGA-L5-A8NM-01 7 48427525 48427525 G A ABCA13 Silent p.L3814L 0.17 TCGA-L5-A8NM-01 7 50344448 50344448 G A IKZF1 5'Flank 0.17 TCGA-L5-A8NM-01 7 50455091 50455091 G A IKZF1 Intron 0.22 TCGA-L5-A8NM-01 7 50513032 50513032 G A FIGNL1 Nonsense_Mutation p.R652* 0.07 TCGA-L5-A8NM-01 7 5105737 5105738 - T RBAK 3'UTR 0.26 TCGA-L5-A8NM-01 7 53103840 53103840 G A POM121L12 Missense_Mutation p.R159H 0.21 tolerated(0.15) probably_damaging(0.923) TCGA-L5-A8NM-01 7 55224336 55224336 C T EGFR Missense_Mutation p.P373S 0.29 tolerated(0.75) possibly_damaging(0.894) TCGA-L5-A8NM-01 7 5922245 5922245 A G OCM Silent p.E61E 0.13 TCGA-L5-A8NM-01 7 62809703 62809703 C T AC006455.1 5'UTR 0.20 TCGA-L5-A8NM-01 7 64169141 64169141 C T ZNF107 3'UTR 0.29 TCGA-L5-A8NM-01 7 65171357 65171357 G A INTS4L2 RNA 0.38 TCGA-L5-A8NM-01 7 65439350 65439350 G A GUSB Silent p.P441P 0.22 TCGA-L5-A8NM-01 7 6731613 6731614 TG - ZNF12 Frame_Shift_Del p.T320Rfs*6 0.13 TCGA-L5-A8NM-01 7 6831535 6831535 C A RSPH10B2 Missense_Mutation p.P714T 0.25 tolerated(0.22) benign(0.026) TCGA-L5-A8NM-01 7 70239044 70239044 C T AUTS2 Missense_Mutation p.P621S 0.14 tolerated(0.08) probably_damaging(0.977) TCGA-L5-A8NM-01 7 70257206 70257206 C T AUTS2 3'UTR 0.30 TCGA-L5-A8NM-01 7 71135007 71135007 A G WBSCR17 Silent p.K439K 0.09 TCGA-L5-A8NM-01 7 72418968 72418968 C T POM121 Missense_Mutation p.R987W 0.17 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NM-01 7 72657225 72657225 G A GTF2IRD2P1 RNA 0.07 TCGA-L5-A8NM-01 7 73107706 73107706 C T WBSCR22 Silent p.G186G 0.12 TCGA-L5-A8NM-01 7 75894705 75894705 G A SRRM3 Missense_Mutation p.R250Q 0.17 tolerated(0.09) unknown(0) TCGA-L5-A8NM-01 7 75916491 75916491 G - SRRM3 3'UTR 0.14 TCGA-L5-A8NM-01 7 77408706 77408706 A - RSBN1L 3'UTR 0.18 TCGA-L5-A8NM-01 7 77814972 77814972 C A MAGI2 Missense_Mutation p.R762M 0.28 deleterious(0.02) benign(0.415) TCGA-L5-A8NM-01 7 80303352 80303352 A - CD36 Frame_Shift_Del p.I438* 0.16 TCGA-L5-A8NM-01 7 81637040 81637040 C T CACNA2D1 Silent p.P465P 0.30 TCGA-L5-A8NM-01 7 82578944 82578944 G A PCLO Nonsense_Mutation p.Q3654* 0.28 TCGA-L5-A8NM-01 7 86493969 86493969 A C GRM3 3'UTR 0.17 TCGA-L5-A8NM-01 7 86571386 86571386 G A KIAA1324L Missense_Mutation p.T230I 0.16 tolerated(0.13) benign(0.056) TCGA-L5-A8NM-01 7 89748933 89748933 T C RP5-1121E10.2 Intron 0.29 TCGA-L5-A8NM-01 7 89748935 89748935 C T RP5-1121E10.2 Intron 0.28 TCGA-L5-A8NM-01 7 91603085 91603085 A - AKAP9 Frame_Shift_Del p.K39Rfs*17 0.24 TCGA-L5-A8NM-01 7 93515975 93515975 A - TFPI2 3'UTR 0.20 TCGA-L5-A8NM-01 7 94791228 94791228 G A PPP1R9A Missense_Mutation p.G567S 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 7 97921931 97921931 A - BAIAP2L1 3'UTR 0.25 TCGA-L5-A8NM-01 7 97937012 97937012 G A BAIAP2L1 Silent p.D384D 0.37 TCGA-L5-A8NM-01 7 98490094 98490094 C T TRRAP Silent p.N103N 0.25 TCGA-L5-A8NM-01 7 98508848 98508848 C T TRRAP Missense_Mutation p.T654M 0.22 probably_damaging(0.943) TCGA-L5-A8NM-01 7 98963741 98963742 - T ARPC1A 3'UTR 0.31 TCGA-L5-A8NM-01 7 99103706 99103706 C - ZKSCAN5 Frame_Shift_Del p.P15Qfs*13 0.15 TCGA-L5-A8NM-01 7 99457552 99457552 C T CYP3A43 Missense_Mutation p.A322V 0.27 deleterious(0) probably_damaging(0.982) TCGA-L5-A8NM-01 7 99474005 99474005 C T OR2AE1 Missense_Mutation p.V218I 0.17 tolerated(0.23) benign(0.006) TCGA-L5-A8NM-01 7 99701292 99701292 G A AP4M1 Missense_Mutation p.V174I 0.36 tolerated(0.63) benign(0.26) TCGA-L5-A8NM-01 7 99720418 99720418 G T CNPY4 Missense_Mutation p.Q118H 0.30 deleterious(0) probably_damaging(0.925) TCGA-L5-A8NM-01 8 101734228 101734228 T - PABPC1 5'UTR 0.40 TCGA-L5-A8NM-01 8 103236304 103236304 G A RRM2B Nonsense_Mutation p.R174* 0.16 TCGA-L5-A8NM-01 8 103271268 103271268 G A UBR5 Silent p.C2682C 0.08 TCGA-L5-A8NM-01 8 103309203 103309204 - A UBR5 Frame_Shift_Ins p.E1195* 0.09 TCGA-L5-A8NM-01 8 10356254 10356254 C T PRSS51 RNA 0.11 TCGA-L5-A8NM-01 8 103662433 103662433 A G KLF10 Missense_Mutation p.L457P 0.08 deleterious(0) probably_damaging(0.961) TCGA-L5-A8NM-01 8 104081149 104081149 A T ATP6V1C1 3'UTR 0.37 TCGA-L5-A8NM-01 8 104225196 104225196 C A BAALC Silent p.A70A 0.44 TCGA-L5-A8NM-01 8 104427646 104427646 C A DCAF13 Nonsense_Mutation p.S143* 0.26 TCGA-L5-A8NM-01 8 10470049 10470049 C T RP1L1 Missense_Mutation p.R520H 0.10 benign(0.03) TCGA-L5-A8NM-01 8 105502332 105502332 T C LRP12 3'UTR 0.08 TCGA-L5-A8NM-01 8 105502342 105502342 G A LRP12 3'UTR 0.11 TCGA-L5-A8NM-01 8 105502353 105502353 A C LRP12 3'UTR 0.35 TCGA-L5-A8NM-01 8 105510178 105510178 G T LRP12 Missense_Mutation p.A201D 0.28 tolerated(0.31) benign(0.031) TCGA-L5-A8NM-01 8 110703686 110703686 C T SYBU 5'UTR 0.21 TCGA-L5-A8NM-01 8 116617171 116617171 T C TRPS1 Missense_Mutation p.N342S 0.12 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-L5-A8NM-01 8 116631988 116631988 A C TRPS1 Missense_Mutation p.F113V 0.13 deleterious_low_confidence(0) benign(0.189) TCGA-L5-A8NM-01 8 117862896 117862898 CTT - RAD21 In_Frame_Del p.K527del 0.28 TCGA-L5-A8NM-01 8 120744196 120744196 T G TAF2 Silent p.R1190R 0.35 TCGA-L5-A8NM-01 8 121550709 121550709 G A SNTB1 3'UTR 0.33 TCGA-L5-A8NM-01 8 123963925 123963925 G A ZHX2 Missense_Mutation p.E59K 0.25 tolerated(0.09) benign(0.314) TCGA-L5-A8NM-01 8 125033884 125033884 A - FER1L6 Frame_Shift_Del p.I705Sfs*94 0.12 TCGA-L5-A8NM-01 8 12879975 12879975 C T KIAA1456 3'UTR 0.47 TCGA-L5-A8NM-01 8 129162390 129162390 G A MIR1208 RNA 0.32 TCGA-L5-A8NM-01 8 13072282 13072282 C T DLC1 Intron 0.11 TCGA-L5-A8NM-01 8 132051742 132051742 C T ADCY8 Missense_Mutation p.A280T 0.09 deleterious(0.01) possibly_damaging(0.77) TCGA-L5-A8NM-01 8 132052482 132052482 G A ADCY8 Missense_Mutation p.P33L 0.22 tolerated(0.16) benign(0.24) TCGA-L5-A8NM-01 8 134232957 134232957 C - WISP1 Frame_Shift_Del p.P163Rfs*11 0.12 TCGA-L5-A8NM-01 8 139209858 139209858 G A FAM135B Nonsense_Mutation p.R242* 0.39 TCGA-L5-A8NM-01 8 139706798 139706798 G A COL22A1 Nonsense_Mutation p.Q885* 0.10 TCGA-L5-A8NM-01 8 141774470 141774470 C T PTK2 Intron 0.21 TCGA-L5-A8NM-01 8 142367933 142367933 C T GPR20 Missense_Mutation p.E31K 0.10 tolerated_low_confidence(0.11) benign(0.058) TCGA-L5-A8NM-01 8 142506590 142506590 G - MROH5 5'UTR 0.11 TCGA-L5-A8NM-01 8 142517267 142517267 G A MROH5 5'UTR 0.12 TCGA-L5-A8NM-01 8 143853341 143853341 C T LYNX1 Intron 0.10 TCGA-L5-A8NM-01 8 143994125 143994125 G T CYP11B2 Missense_Mutation p.L407I 0.09 deleterious(0.02) possibly_damaging(0.881) TCGA-L5-A8NM-01 8 144621273 144621273 G A ZC3H3 Silent p.A88A 0.10 TCGA-L5-A8NM-01 8 144789882 144789882 C T CCDC166 Missense_Mutation p.R133H 0.27 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NM-01 8 144809053 144809053 G A FAM83H Missense_Mutation p.H860Y 0.09 tolerated(1) benign(0.001) TCGA-L5-A8NM-01 8 144873383 144873383 G T SCRIB Missense_Mutation p.R1640S 0.24 unknown(0) TCGA-L5-A8NM-01 8 144994758 144994758 G A PLEC Silent p.T3214T 0.29 TCGA-L5-A8NM-01 8 145616338 145616338 A G ADCK5 Missense_Mutation p.D183G 0.10 tolerated(0.09) benign(0.009) TCGA-L5-A8NM-01 8 145701036 145701036 G A FOXH1 Missense_Mutation p.P35L 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 8 145745261 145745261 T C LRRC14 Missense_Mutation p.V51A 0.12 deleterious(0.01) probably_damaging(0.935) TCGA-L5-A8NM-01 8 145747975 145747975 A G LRRC24 Missense_Mutation p.S476P 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.863) TCGA-L5-A8NM-01 8 145947906 145947906 T A ZNF251 Missense_Mutation p.N380I 0.45 deleterious(0.04) possibly_damaging(0.904) TCGA-L5-A8NM-01 8 145999587 145999587 T - ZNF34 Frame_Shift_Del p.K249Nfs*75 0.11 TCGA-L5-A8NM-01 8 146033645 146033645 C T ZNF517 Silent p.G448G 0.29 TCGA-L5-A8NM-01 8 146076355 146076355 G A COMMD5 Silent p.V123V 0.07 TCGA-L5-A8NM-01 8 15508230 15508230 A G TUSC3 Missense_Mutation p.I111M 0.08 deleterious(0.01) possibly_damaging(0.653) TCGA-L5-A8NM-01 8 15978079 15978079 C T MSR1 Missense_Mutation p.G357D 0.10 deleterious(0.01) possibly_damaging(0.477) TCGA-L5-A8NM-01 8 1626719 1626719 C T DLGAP2 Silent p.H796H 0.12 TCGA-L5-A8NM-01 8 16948074 16948074 A G MICU3 Missense_Mutation p.Y290C 0.15 deleterious(0.04) benign(0.395) TCGA-L5-A8NM-01 8 18392906 18392906 A - PSD3 3'UTR 0.39 TCGA-L5-A8NM-01 8 21563491 21563491 G T GFRA2 Missense_Mutation p.P286H 0.12 deleterious(0.01) probably_damaging(0.954) TCGA-L5-A8NM-01 8 21984704 21984704 G A HR Silent p.P417P 0.14 TCGA-L5-A8NM-01 8 22105405 22105405 G A POLR3D Missense_Mutation p.R82H 0.16 tolerated(0.09) benign(0.01) TCGA-L5-A8NM-01 8 22470553 22470553 G A CCAR2 Missense_Mutation p.R203H 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A8NM-01 8 22545191 22545191 T A EGR3 3'UTR 0.14 TCGA-L5-A8NM-01 8 22862121 22862121 A G RHOBTB2 Silent p.Q80Q 0.13 TCGA-L5-A8NM-01 8 22960403 22960403 T C TNFRSF10C 5'UTR 0.11 TCGA-L5-A8NM-01 8 22995107 22995107 C A TNFRSF10D 3'UTR 0.36 TCGA-L5-A8NM-01 8 23700335 23700335 C T STC1 3'UTR 0.07 TCGA-L5-A8NM-01 8 26365709 26365709 G A PNMA2 Missense_Mutation p.A188V 0.20 tolerated(1) benign(0.028) TCGA-L5-A8NM-01 8 27324753 27324753 A G CHRNA2 Missense_Mutation p.Y148H 0.11 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 8 27903090 27903090 C T NUGGC Missense_Mutation p.G467D 0.11 tolerated(0.05) possibly_damaging(0.888) TCGA-L5-A8NM-01 8 28206053 28206053 T A ZNF395 3'UTR 0.22 TCGA-L5-A8NM-01 8 28420373 28420373 C T FZD3 Nonsense_Mutation p.R616* 0.29 TCGA-L5-A8NM-01 8 28628531 28628531 G A INTS9 Silent p.L544L 0.16 TCGA-L5-A8NM-01 8 2975937 2975937 A G CSMD1 Silent p.P2138P 0.09 TCGA-L5-A8NM-01 8 30701437 30701437 T C TEX15 Silent p.T1699T 0.07 TCGA-L5-A8NM-01 8 30946428 30946428 T C WRN Silent p.N533N 0.23 TCGA-L5-A8NM-01 8 30977866 30977866 T C WRN Silent p.I852I 0.10 TCGA-L5-A8NM-01 8 32579412 32579412 C T NRG1 Intron 0.12 TCGA-L5-A8NM-01 8 3265533 3265533 A G CSMD1 Silent p.T653T 0.32 TCGA-L5-A8NM-01 8 36768606 36768608 CTC - KCNU1 In_Frame_Del p.S833del 0.15 TCGA-L5-A8NM-01 8 37554830 37554830 C T ZNF703 Silent p.A137A 0.32 TCGA-L5-A8NM-01 8 37996541 37996541 C T ASH2L Silent p.H613H 0.33 TCGA-L5-A8NM-01 8 38103301 38103301 G T DDHD2 Missense_Mutation p.R297M 0.13 deleterious(0) probably_damaging(0.977) TCGA-L5-A8NM-01 8 38175370 38175370 A G WHSC1L1 Intron 0.23 TCGA-L5-A8NM-01 8 38677720 38677721 - T TACC1 Frame_Shift_Ins p.E321* 0.11 TCGA-L5-A8NM-01 8 38809686 38809686 C T PLEKHA2 Silent p.N163N 0.17 TCGA-L5-A8NM-01 8 39313017 39313018 - T ADAM3A RNA 0.24 TCGA-L5-A8NM-01 8 39603995 39603995 C T ADAM2 Missense_Mutation p.D724N 0.15 tolerated(0.1) unknown(0) TCGA-L5-A8NM-01 8 41553959 41553959 G A ANK1 Missense_Mutation p.T1002M 0.22 deleterious(0) possibly_damaging(0.744) TCGA-L5-A8NM-01 8 41791588 41791588 C T KAT6A Missense_Mutation p.V1384M 0.14 unknown(0) TCGA-L5-A8NM-01 8 42274147 42274147 A - SLC20A2 3'UTR 0.30 TCGA-L5-A8NM-01 8 42611064 42611064 C T CHRNA6 Silent p.S426S 0.10 TCGA-L5-A8NM-01 8 48776098 48776098 A G PRKDC Missense_Mutation p.M1870T 0.20 benign(0.02) TCGA-L5-A8NM-01 8 48973586 48973586 T - UBE2V2 3'UTR 0.31 TCGA-L5-A8NM-01 8 53071577 53071577 A G ST18 Missense_Mutation p.Y563H 0.07 tolerated(0.17) benign(0.019) TCGA-L5-A8NM-01 8 53554985 53554985 T C RB1CC1 Silent p.S1421S 0.12 TCGA-L5-A8NM-01 8 53574183 53574183 A T RB1CC1 Missense_Mutation p.L424M 0.13 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NM-01 8 53852507 53852507 G A NPBWR1 Missense_Mutation p.A14T 0.33 tolerated(0.47) benign(0) TCGA-L5-A8NM-01 8 55370816 55370816 G A SOX17 Missense_Mutation p.G40R 0.44 deleterious(0.01) benign(0.209) TCGA-L5-A8NM-01 8 56435983 56435983 G A XKR4 Missense_Mutation p.A384T 0.34 tolerated(0.16) probably_damaging(0.996) TCGA-L5-A8NM-01 8 57076218 57076219 - TG PLAG1 3'UTR 0.17 TCGA-L5-A8NM-01 8 57076234 57076234 A G PLAG1 3'UTR 0.22 TCGA-L5-A8NM-01 8 62412295 62412295 T - CLVS1 3'UTR 0.24 TCGA-L5-A8NM-01 8 6289044 6289044 T C MCPH1 Silent p.I86I 0.25 TCGA-L5-A8NM-01 8 70674105 70674105 T C SLCO5A1 Missense_Mutation p.M305V 0.38 deleterious(0.04) benign(0.043) TCGA-L5-A8NM-01 8 70970931 70970931 G A PRDM14 Missense_Mutation p.R444W 0.11 deleterious(0.02) benign(0.165) TCGA-L5-A8NM-01 8 72156850 72156850 A - EYA1 Frame_Shift_Del p.F376Lfs*4 0.10 TCGA-L5-A8NM-01 8 72754719 72754719 C T MSC 3'UTR 0.50 TCGA-L5-A8NM-01 8 74705026 74705026 T - UBE2W 3'UTR 0.24 TCGA-L5-A8NM-01 8 77912372 77912372 A - PEX2 Intron 0.20 TCGA-L5-A8NM-01 8 87443634 87443635 - A WWP1 Frame_Shift_Ins p.R465Kfs*14 0.27 TCGA-L5-A8NM-01 8 89052590 89052591 - T MMP16 3'UTR 0.13 TCGA-L5-A8NM-01 8 91962099 91962100 - GT NECAB1 Frame_Shift_Ins p.W311Yfs*32 0.26 TCGA-L5-A8NM-01 8 92090607 92090607 G T OTUD6B Missense_Mutation p.K143N 0.34 deleterious(0.03) probably_damaging(0.996) TCGA-L5-A8NM-01 8 92352747 92352747 A - SLC26A7 Frame_Shift_Del p.K333Nfs*20 0.10 TCGA-L5-A8NM-01 8 95952411 95952411 T C TP53INP1 Silent p.E50E 0.47 TCGA-L5-A8NM-01 8 9634706 9634707 - T TNKS 3'UTR 0.21 TCGA-L5-A8NM-01 8 97156742 97156742 G A GDF6 3'UTR 0.13 TCGA-L5-A8NM-01 8 97263175 97263176 - T MTERFD1 Frame_Shift_Ins p.N212Kfs*7 0.26 TCGA-L5-A8NM-01 8 97623556 97623556 A - SDC2 3'UTR 0.33 TCGA-L5-A8NM-01 8 98737105 98737105 A G MTDH 3'UTR 0.11 TCGA-L5-A8NM-01 8 98900320 98900320 G A MATN2 5'UTR 0.15 TCGA-L5-A8NM-01 9 101552504 101552504 G A ANKS6 Silent p.G248G 0.22 TCGA-L5-A8NM-01 9 101706453 101706453 C T COL15A1 Silent p.N7N 0.31 TCGA-L5-A8NM-01 9 102627429 102627429 T C NR4A3 3'UTR 0.09 TCGA-L5-A8NM-01 9 102992043 102992043 G T INVS Missense_Mutation p.K183N 0.15 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NM-01 9 104238840 104238840 G A TMEM246 Missense_Mutation p.P179S 0.11 tolerated(0.35) benign(0.039) TCGA-L5-A8NM-01 9 104309733 104309733 G A RNF20 Missense_Mutation p.R342H 0.32 deleterious(0.02) possibly_damaging(0.522) TCGA-L5-A8NM-01 9 104390676 104390676 T C GRIN3A Missense_Mutation p.H787R 0.13 tolerated(0.13) probably_damaging(0.926) TCGA-L5-A8NM-01 9 107543389 107543389 T - ABCA1 3'UTR 0.18 TCGA-L5-A8NM-01 9 108152555 108152555 A - SLC44A1 3'UTR 0.29 TCGA-L5-A8NM-01 9 108152629 108152629 A - SLC44A1 3'UTR 0.24 TCGA-L5-A8NM-01 9 110249642 110249642 C T KLF4 Missense_Mutation p.G345R 0.50 tolerated(0.1) benign(0.007) TCGA-L5-A8NM-01 9 111800355 111800355 T A TMEM245 Silent p.G722G 0.13 TCGA-L5-A8NM-01 9 112706283 112706283 A G PALM2 3'Flank 0.17 TCGA-L5-A8NM-01 9 114131441 114131441 T C KIAA0368 Missense_Mutation p.S1841G 0.12 tolerated(0.2) benign(0.117) TCGA-L5-A8NM-01 9 115941002 115941002 T - FKBP15 Frame_Shift_Del p.K665Rfs*9 0.12 TCGA-L5-A8NM-01 9 116499 116502 TTGT - FOXD4 3'UTR 0.18 TCGA-L5-A8NM-01 9 116818000 116818005 AATACA TAC ZNF618 3'UTR 0.11 TCGA-L5-A8NM-01 9 117389249 117389249 T G C9orf91 Missense_Mutation p.I96S 0.10 deleterious(0.01) possibly_damaging(0.558) TCGA-L5-A8NM-01 9 119159351 119159351 C A PAPPA 3'UTR 0.23 TCGA-L5-A8NM-01 9 119462928 119462928 T A TRIM32 3'UTR 0.21 TCGA-L5-A8NM-01 9 121929281 121929282 - T BRINP1 3'UTR 0.28 TCGA-L5-A8NM-01 9 123290093 123290093 C T CDK5RAP2 Silent p.K330K 0.16 TCGA-L5-A8NM-01 9 123943436 123943436 A - RAB14 3'UTR 0.19 TCGA-L5-A8NM-01 9 124632949 124632949 G A TTLL11 Silent p.N610N 0.45 TCGA-L5-A8NM-01 9 124967006 124967006 C T LHX6 3'UTR 0.25 TCGA-L5-A8NM-01 9 125273680 125273680 C A OR1J2 Missense_Mutation p.F200L 0.17 tolerated_low_confidence(0.37) benign(0.013) TCGA-L5-A8NM-01 9 125289191 125289191 G - OR1N1 Frame_Shift_Del p.L128Sfs*7 0.12 TCGA-L5-A8NM-01 9 125670910 125670910 C A ZBTB6 3'UTR 0.15 TCGA-L5-A8NM-01 9 127549374 127549374 G A OLFML2A Missense_Mutation p.V71M 0.14 deleterious(0.03) probably_damaging(0.994) TCGA-L5-A8NM-01 9 129643256 129643256 T C ZBTB34 3'UTR 0.31 TCGA-L5-A8NM-01 9 129870796 129870796 T C ANGPTL2 Missense_Mutation p.N72S 0.18 tolerated(0.71) probably_damaging(0.989) TCGA-L5-A8NM-01 9 130207079 130207079 G T ZNF79 Missense_Mutation p.G367V 0.28 deleterious(0) probably_damaging(0.952) TCGA-L5-A8NM-01 9 130269287 130269287 G A FAM129B Missense_Mutation p.P693L 0.16 deleterious_low_confidence(0.02) benign(0.059) TCGA-L5-A8NM-01 9 130854349 130854349 C A SLC25A25 Intron 0.24 TCGA-L5-A8NM-01 9 130870618 130870620 AGA - SLC25A25 3'UTR 0.20 TCGA-L5-A8NM-01 9 130928677 130928677 C A CIZ1 Missense_Mutation p.K832N 0.16 deleterious(0.01) possibly_damaging(0.596) TCGA-L5-A8NM-01 9 132720823 132720823 C T FNBP1 Missense_Mutation p.D119N 0.12 deleterious(0.04) benign(0.052) TCGA-L5-A8NM-01 9 133278211 133278211 G A AL354898.1 Missense_Mutation p.A53T 0.28 tolerated(0.19) benign(0.047) TCGA-L5-A8NM-01 9 134183419 134183419 C T PPAPDC3 Silent p.Y187Y 0.12 TCGA-L5-A8NM-01 9 134319642 134319642 G A PRRC2B Silent p.G180G 0.26 TCGA-L5-A8NM-01 9 134501680 134501680 C T RAPGEF1 Missense_Mutation p.G445D 0.32 deleterious_low_confidence(0.04) possibly_damaging(0.682) TCGA-L5-A8NM-01 9 135779172 135779172 G A TSC1 Nonsense_Mutation p.R692* 0.11 TCGA-L5-A8NM-01 9 136270872 136270872 G A C9orf96 3'UTR 0.14 TCGA-L5-A8NM-01 9 138379043 138379043 G - PPP1R26 Frame_Shift_Del p.V898Sfs*56 0.26 TCGA-L5-A8NM-01 9 138710463 138710463 C A CAMSAP1 Splice_Site p.X1320_splice 0.21 TCGA-L5-A8NM-01 9 139636343 139636343 C T LCN10 Missense_Mutation p.A83T 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A8NM-01 9 139701355 139701355 G A CCDC183 Intron 0.19 TCGA-L5-A8NM-01 9 139913644 139913644 G A ABCA2 Missense_Mutation p.R514C 0.22 deleterious(0.01) possibly_damaging(0.764) TCGA-L5-A8NM-01 9 139924998 139924998 C A FUT7 3'UTR 0.22 TCGA-L5-A8NM-01 9 140110190 140110190 G - NDOR1 Frame_Shift_Del p.P458Lfs*5 0.16 TCGA-L5-A8NM-01 9 140147122 140147122 G A C9orf173 Silent p.S167S 0.33 TCGA-L5-A8NM-01 9 140166584 140166584 C T NELFB Missense_Mutation p.T466M 0.15 deleterious(0.05) benign(0.179) TCGA-L5-A8NM-01 9 140196214 140196214 T C NRARP Missense_Mutation p.H56R 0.15 deleterious(0) probably_damaging(0.954) TCGA-L5-A8NM-01 9 140707552 140707552 G A EHMT1 Missense_Mutation p.A988T 0.22 tolerated(0.08) probably_damaging(0.968) TCGA-L5-A8NM-01 9 14113047 14113047 C T NFIB Missense_Mutation p.R473Q 0.10 deleterious(0.01) probably_damaging(0.986) TCGA-L5-A8NM-01 9 16436056 16436056 A T BNC2 Silent p.T712T 0.27 TCGA-L5-A8NM-01 9 17457611 17457611 A G CNTLN Silent p.A1068A 0.24 TCGA-L5-A8NM-01 9 17484318 17484318 A G CNTLN Missense_Mutation p.D1294G 0.12 deleterious(0.02) possibly_damaging(0.892) TCGA-L5-A8NM-01 9 2193371 2193371 A - SMARCA2 3'UTR 0.13 TCGA-L5-A8NM-01 9 21971023 21971023 C T CDKN2A Missense_Mutation p.R112H 0.13 tolerated(0.05) benign(0.338) TCGA-L5-A8NM-01 9 23692164 23692164 G A ELAVL2 3'UTR 0.10 TCGA-L5-A8NM-01 9 2834090 2834090 A G KIAA0020 Silent p.S127S 0.17 TCGA-L5-A8NM-01 9 289570 289570 C T DOCK8 Silent p.I131I 0.12 TCGA-L5-A8NM-01 9 328099 328099 C T DOCK8 Silent p.A324A 0.15 TCGA-L5-A8NM-01 9 33112747 33112747 A - B4GALT1 3'UTR 0.27 TCGA-L5-A8NM-01 9 34521524 34521524 G T ENHO Missense_Mutation p.P57H 0.22 deleterious_low_confidence(0.02) probably_damaging(0.95) TCGA-L5-A8NM-01 9 34557906 34557906 G T CNTFR Silent p.P132P 0.14 TCGA-L5-A8NM-01 9 35062276 35062276 T C VCP Missense_Mutation p.K295E 0.36 tolerated(0.17) benign(0.061) TCGA-L5-A8NM-01 9 35067909 35067909 A G VCP Missense_Mutation p.V94A 0.11 tolerated(0.1) benign(0.294) TCGA-L5-A8NM-01 9 35106613 35106613 C T FAM214B Silent p.G327G 0.15 TCGA-L5-A8NM-01 9 35107838 35107838 C T FAM214B Missense_Mutation p.C145Y 0.10 tolerated_low_confidence(0.14) benign(0) TCGA-L5-A8NM-01 9 35563286 35563286 G T FAM166B Missense_Mutation p.P55T 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-L5-A8NM-01 9 36102113 36102113 A - RECK Frame_Shift_Del p.K442Nfs*27 0.19 TCGA-L5-A8NM-01 9 37541711 37541711 G A FBXO10 Missense_Mutation p.H19Y 0.25 tolerated(0.08) benign(0.194) TCGA-L5-A8NM-01 9 37737192 37737192 C A FRMPD1 Missense_Mutation p.L501I 0.11 tolerated(0.54) benign(0.009) TCGA-L5-A8NM-01 9 38396185 38396185 G A ALDH1B1 Missense_Mutation p.R147Q 0.39 deleterious(0.05) benign(0.02) TCGA-L5-A8NM-01 9 4792968 4792968 G A RCL1 5'UTR 0.35 TCGA-L5-A8NM-01 9 70993145 70993145 A G PGM5 Missense_Mutation p.I98V 0.08 deleterious(0.01) possibly_damaging(0.573) TCGA-L5-A8NM-01 9 71396409 71396409 A - FAM122A 3'UTR 0.13 TCGA-L5-A8NM-01 9 72131557 72131557 G A APBA1 Silent p.Y190Y 0.21 TCGA-L5-A8NM-01 9 72435881 72435881 G A C9orf135 Missense_Mutation p.R29H 0.24 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NM-01 9 77415259 77415259 G A TRPM6 Nonsense_Mutation p.R717* 0.24 TCGA-L5-A8NM-01 9 77502166 77502166 G A TRPM6 Intron 0.23 TCGA-L5-A8NM-01 9 84531279 84531279 A - SPATA31D5P RNA 0.18 TCGA-L5-A8NM-01 9 84564459 84564459 T C RP11-383M4.6 Intron 0.07 TCGA-L5-A8NM-01 9 85637251 85637251 G A RASEF Silent p.D223D 0.27 TCGA-L5-A8NM-01 9 86275746 86275746 T - UBQLN1 3'UTR 0.27 TCGA-L5-A8NM-01 9 86465154 86465155 - T KIF27 Frame_Shift_Ins p.M1139Nfs*8 0.09 TCGA-L5-A8NM-01 9 88932151 88932151 A G ZCCHC6 Missense_Mutation p.V1086A 0.17 tolerated(0.09) benign(0.004) TCGA-L5-A8NM-01 9 90321327 90321327 G A DAPK1 Missense_Mutation p.R1114H 0.18 tolerated(0.21) benign(0.007) TCGA-L5-A8NM-01 9 90535546 90535546 C T SPATA31C1 RNA 0.22 TCGA-L5-A8NM-01 9 91994102 91994102 C T SEMA4D Silent p.A702A 0.18 TCGA-L5-A8NM-01 9 94484809 94484809 G A ROR2 3'Flank 0.26 TCGA-L5-A8NM-01 9 94538048 94538048 C A ROR2 Missense_Mutation p.Q50H 0.09 tolerated_low_confidence(0.6) benign(0) TCGA-L5-A8NM-01 9 95009783 95009783 G T IARS Silent p.G889G 0.16 TCGA-L5-A8NM-01 9 95077338 95077338 G A NOL8 Silent p.S523S 0.30 TCGA-L5-A8NM-01 9 95646881 95646881 C T RP11-526D8.7 RNA 0.17 TCGA-L5-A8NM-01 9 95838183 95838183 G T SUSD3 Missense_Mutation p.G69V 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 9 96070769 96070769 C T WNK2 Missense_Mutation p.A2177V 0.10 unknown(0) TCGA-L5-A8NM-01 9 96079878 96079878 C T WNK2 Missense_Mutation p.P2235L 0.12 unknown(0) TCGA-L5-A8NM-01 9 97203357 97203357 C T HIATL1 Silent p.H162H 0.30 TCGA-L5-A8NM-01 9 98211549 98211549 G - PTCH1 Frame_Shift_Del p.S1203Afs*52 0.21 TCGA-L5-A8NM-01 9 99262634 99262634 A - CDC14B 3'UTR 0.31 TCGA-L5-A8NM-01 9 99403967 99403967 C T AAED1 3'UTR 0.23 TCGA-L5-A8NM-01 9 99694528 99694528 G T NUTM2G Missense_Mutation p.G181W 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 X 100364892 100364892 C T CENPI Missense_Mutation p.R166C 0.26 deleterious(0) probably_damaging(0.956) TCGA-L5-A8NM-01 X 10085597 10085597 C T WWC3 Missense_Mutation p.R500W 0.48 deleterious(0.05) benign(0.073) TCGA-L5-A8NM-01 X 101381878 101381878 C A TCEAL2 Missense_Mutation p.H26N 0.50 tolerated(0.17) benign(0) TCGA-L5-A8NM-01 X 101572262 101572262 G A NXF2 Intron 0.15 TCGA-L5-A8NM-01 X 105201278 105201278 T A NRK 3'UTR 0.34 TCGA-L5-A8NM-01 X 106171568 106171568 G A CLDN2 Missense_Mutation p.G37D 0.11 deleterious(0.02) probably_damaging(0.986) TCGA-L5-A8NM-01 X 106846471 106846471 A G FRMPD3 Silent p.Q1767Q 0.45 TCGA-L5-A8NM-01 X 107898611 107898611 T C COL4A5 Silent p.S1099S 0.13 TCGA-L5-A8NM-01 X 115569030 115569030 A - SLC6A14 Frame_Shift_Del p.K42Nfs*8 0.23 TCGA-L5-A8NM-01 X 11783863 11783863 G A MSL3 Intron 0.12 TCGA-L5-A8NM-01 X 118893451 118893451 C T SOWAHD Missense_Mutation p.A274V 0.38 tolerated(0.25) benign(0.054) TCGA-L5-A8NM-01 X 120182541 120182541 G A GLUD2 Missense_Mutation p.G335R 0.28 tolerated(0.09) probably_damaging(0.986) TCGA-L5-A8NM-01 X 125684272 125684272 C T DCAF12L1 3'UTR 0.37 TCGA-L5-A8NM-01 X 125954833 125954833 A G CXorf64 Missense_Mutation p.E71G 0.11 deleterious(0.02) probably_damaging(0.932) TCGA-L5-A8NM-01 X 130217937 130217937 G A ARHGAP36 Silent p.G183G 0.24 TCGA-L5-A8NM-01 X 130678939 130678939 C T OR13H1 Missense_Mutation p.R298W 0.26 deleterious(0.02) benign(0.093) TCGA-L5-A8NM-01 X 131762903 131762903 C T HS6ST2 Missense_Mutation p.R429H 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 X 132092616 132092616 C T HS6ST2 Silent p.A5A 0.22 TCGA-L5-A8NM-01 X 136652708 136652708 T - ZIC3 3'UTR 0.19 TCGA-L5-A8NM-01 X 140714666 140714666 A - RP1-171K16.5 RNA 0.16 TCGA-L5-A8NM-01 X 1424391 1424391 C T CSF2RA Silent p.L400L 0.16 TCGA-L5-A8NM-01 X 144904398 144904398 G T SLITRK2 Missense_Mutation p.G152V 0.27 deleterious(0) probably_damaging(0.969) TCGA-L5-A8NM-01 X 148069012 148069012 G A AFF2 Missense_Mutation p.V1247I 0.29 deleterious(0) probably_damaging(0.965) TCGA-L5-A8NM-01 X 150155677 150155677 G A HMGB3 Missense_Mutation p.V123M 0.56 deleterious(0.03) possibly_damaging(0.789) TCGA-L5-A8NM-01 X 151283730 151283730 G A RP11-1007I13.4 RNA 0.17 TCGA-L5-A8NM-01 X 152915674 152915674 G - DUSP9 Frame_Shift_Del p.Q359Rfs*77 0.17 TCGA-L5-A8NM-01 X 153009046 153009046 C T ABCD1 Silent p.L699L 0.07 TCGA-L5-A8NM-01 X 153289458 153289458 G A IRAK1 5'Flank 0.19 TCGA-L5-A8NM-01 X 153581543 153581543 C - FLNA Frame_Shift_Del p.E2018Sfs*6 0.14 TCGA-L5-A8NM-01 X 155010163 155010164 - T SPRY3 3'UTR 0.35 TCGA-L5-A8NM-01 X 1584894 1584894 G A P2RY8 Silent p.S186S 0.29 TCGA-L5-A8NM-01 X 1761874 1761874 A G ASMT Silent p.G363G 0.07 TCGA-L5-A8NM-01 X 19560215 19560215 G - SH3KBP1 Frame_Shift_Del p.L574Cfs*39 0.11 TCGA-L5-A8NM-01 X 21674919 21674920 - CTC KLHL34 In_Frame_Ins p.E329dup 0.36 TCGA-L5-A8NM-01 X 24735597 24735597 C A POLA1 Silent p.T293T 0.29 TCGA-L5-A8NM-01 X 2670327 2670327 G C XG Missense_Mutation p.W4C 0.45 tolerated(0.13) probably_damaging(0.95) TCGA-L5-A8NM-01 X 29935585 29935586 CT - IL1RAPL1 Frame_Shift_Del p.S262Cfs*2 0.09 TCGA-L5-A8NM-01 X 30261696 30261696 T - MAGEB4 3'UTR 0.30 TCGA-L5-A8NM-01 X 32466646 32466646 T - DMD Frame_Shift_Del p.K1238Rfs*6 0.13 TCGA-L5-A8NM-01 X 32717262 32717262 A - DMD Frame_Shift_Del p.Q267Sfs*16 0.28 TCGA-L5-A8NM-01 X 41202035 41202035 C T DDX3X Silent p.Y163Y 0.23 TCGA-L5-A8NM-01 X 44401202 44401202 G A FUNDC1 Silent p.G58G 0.18 TCGA-L5-A8NM-01 X 44703372 44703372 C T DUSP21 5'UTR 0.18 TCGA-L5-A8NM-01 X 47065253 47065253 A - UBA1 Intron 0.18 TCGA-L5-A8NM-01 X 47422426 47422426 C T ARAF Silent p.T20T 0.14 TCGA-L5-A8NM-01 X 48687785 48687785 G A ERAS Silent p.L84L 0.18 TCGA-L5-A8NM-01 X 49642955 49642957 CCT - USP27X 5'Flank 0.35 TCGA-L5-A8NM-01 X 49643277 49643278 - C USP27X 5'Flank 0.44 TCGA-L5-A8NM-01 X 53115001 53115001 T C TSPYL2 Missense_Mutation p.I476T 0.24 deleterious_low_confidence(0) benign(0.108) TCGA-L5-A8NM-01 X 53570860 53570860 G A HUWE1 Missense_Mutation p.A3774V 0.19 unknown(0) TCGA-L5-A8NM-01 X 57146545 57146545 T C SPIN2B Missense_Mutation p.Y173C 0.13 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 X 68751821 68751821 C A FAM155B 3'UTR 0.35 TCGA-L5-A8NM-01 X 70470303 70470303 T - ZMYM3 Frame_Shift_Del p.K351Rfs*96 0.32 TCGA-L5-A8NM-01 X 72783226 72783226 T C CHIC1 Missense_Mutation p.S36P 0.30 tolerated_low_confidence(0.2) unknown(0) TCGA-L5-A8NM-01 X 73072350 73072350 A - XIST RNA 0.26 TCGA-L5-A8NM-01 X 73958397 73958397 G A KIAA2022 3'UTR 0.17 TCGA-L5-A8NM-01 X 75650001 75650001 C A MAGEE1 Missense_Mutation p.L560M 0.37 deleterious(0) probably_damaging(1) TCGA-L5-A8NM-01 X 79699926 79699927 - A FAM46D 3'UTR 0.28 TCGA-L5-A8NM-01 X 83616578 83616578 G T HDX Missense_Mutation p.L450I 0.26 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 X 85211363 85211363 A - CHM Frame_Shift_Del p.Y321Mfs*4 0.23 TCGA-L5-A8NM-01 X 86772933 86772933 C T KLHL4 Nonsense_Mutation p.Q13* 0.26 TCGA-L5-A8NM-01 X 90691924 90691924 T - PABPC5 3'UTR 0.14 TCGA-L5-A8NM-01 X 92927880 92927880 G T NAP1L3 Missense_Mutation p.P142T 0.13 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NM-01 X 96173528 96173528 C A DIAPH2 Missense_Mutation p.A297D 0.17 deleterious(0) unknown(0) TCGA-L5-A8NN-01 10 54054011 54054011 C A PRKG1 3'UTR 0.76 TCGA-L5-A8NN-01 10 54054398 54054398 G C PRKG1 3'UTR 0.16 TCGA-L5-A8NN-01 10 64968032 64968032 G C JMJD1C Missense_Mutation p.P1133A 0.64 tolerated(0.09) benign(0.061) TCGA-L5-A8NN-01 10 93778666 93778666 G A BTAF1 Missense_Mutation p.A1613T 0.09 deleterious(0) probably_damaging(0.963) TCGA-L5-A8NN-01 11 102233653 102233653 G A BIRC2 Missense_Mutation p.G341D 0.30 deleterious(0) possibly_damaging(0.861) TCGA-L5-A8NN-01 11 103027166 103027166 G A DYNC2H1 Missense_Mutation p.R1265H 0.09 benign(0.022) TCGA-L5-A8NN-01 11 118918724 118918724 G C HYOU1 Silent p.R815R 0.15 TCGA-L5-A8NN-01 11 1247459 1247459 G A MUC5B Missense_Mutation p.R51Q 0.34 unknown(0) TCGA-L5-A8NN-01 11 132206083 132206083 T - NTM 3'Flank 0.16 TCGA-L5-A8NN-01 11 22279255 22279255 G A ANO5 Silent p.T454T 0.27 TCGA-L5-A8NN-01 11 47353666 47353666 G A MYBPC3 Silent p.N1257N 0.19 TCGA-L5-A8NN-01 11 5530201 5530201 A T UBQLN3 Missense_Mutation p.H196Q 0.40 tolerated(1) benign(0.393) TCGA-L5-A8NN-01 11 55406658 55406658 C A OR4P4 Silent p.I275I 0.24 TCGA-L5-A8NN-01 11 57575738 57575738 C T CTNND1 Nonsense_Mutation p.Q689* 0.29 TCGA-L5-A8NN-01 11 64847073 64847073 G A CDCA5 Missense_Mutation p.R144C 0.19 deleterious(0.01) possibly_damaging(0.784) TCGA-L5-A8NN-01 11 77702183 77702183 C T INTS4 Missense_Mutation p.V73I 0.40 tolerated(0.16) benign(0.002) TCGA-L5-A8NN-01 11 88070697 88070697 G A CTSC Silent p.S48S 0.06 TCGA-L5-A8NN-01 11 89392887 89392887 C A FOLH1B RNA 0.34 TCGA-L5-A8NN-01 11 89450867 89450867 C T TRIM77 Missense_Mutation p.P394S 0.20 deleterious(0.04) benign(0.377) TCGA-L5-A8NN-01 12 122985317 122985317 G A ZCCHC8 Missense_Mutation p.P24L 0.21 deleterious(0.03) possibly_damaging(0.649) TCGA-L5-A8NN-01 12 46211623 46211623 C - ARID2 Frame_Shift_Del p.P197Lfs*18 0.44 TCGA-L5-A8NN-01 12 53895103 53895103 C G TARBP2 5'UTR 0.21 TCGA-L5-A8NN-01 12 85466844 85466844 G T LRRIQ1 Missense_Mutation p.C952F 0.47 tolerated(0.7) benign(0.001) TCGA-L5-A8NN-01 12 9305470 9305470 A C PZP Silent p.T1357T 0.23 TCGA-L5-A8NN-01 13 103473443 103473443 C A BIVM-ERCC5 Missense_Mutation p.S193Y 0.60 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-L5-A8NN-01 13 31338241 31338241 T A ALOX5AP Nonstop_Mutation p.*162Kext*12 0.67 TCGA-L5-A8NN-01 13 49039405 49039406 - A RB1 Frame_Shift_Ins p.R798Tfs*17 0.38 TCGA-L5-A8NN-01 13 88327779 88327779 G A SLITRK5 Missense_Mutation p.E46K 0.28 deleterious(0) probably_damaging(0.926) TCGA-L5-A8NN-01 14 105617246 105617246 C T JAG2 Missense_Mutation p.V462I 0.56 tolerated(1) benign(0.004) TCGA-L5-A8NN-01 14 105964139 105964139 C T C14orf80 Missense_Mutation p.T259M 0.25 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NN-01 14 23848315 23848315 G T CMTM5 Missense_Mutation p.A119S 0.25 tolerated(0.35) possibly_damaging(0.848) TCGA-L5-A8NN-01 14 23863421 23863421 C T MYH6 Silent p.T847T 0.39 TCGA-L5-A8NN-01 14 44976322 44976322 A C FSCB 5'UTR 0.46 TCGA-L5-A8NN-01 14 55818138 55818138 G A FBXO34 Missense_Mutation p.G344R 0.38 tolerated(0.32) benign(0.003) TCGA-L5-A8NN-01 14 61438646 61438647 TT - TRMT5 3'UTR 0.69 TCGA-L5-A8NN-01 14 92563080 92563080 C G ATXN3 Missense_Mutation p.E43Q 0.06 tolerated(0.09) possibly_damaging(0.505) TCGA-L5-A8NN-01 14 93398760 93398760 C T CHGA Missense_Mutation p.A285V 0.14 deleterious(0.04) benign(0.128) TCGA-L5-A8NN-01 14 93704887 93704888 - A BTBD7 3'UTR 0.50 TCGA-L5-A8NN-01 15 102304789 102304791 GAA - DNM1P47 RNA 0.43 TCGA-L5-A8NN-01 15 40594185 40594185 G A PLCB2 Silent p.L185L 0.29 TCGA-L5-A8NN-01 15 44107236 44107236 C T MFAP1 Silent p.V112V 0.27 TCGA-L5-A8NN-01 15 48451099 48451099 C A MYEF2 Missense_Mutation p.W246C 0.32 deleterious(0) probably_damaging(1) TCGA-L5-A8NN-01 15 73585844 73585844 C A NEO1 Missense_Mutation p.P1286T 0.26 tolerated(0.12) possibly_damaging(0.622) TCGA-L5-A8NN-01 15 78732161 78732161 A G IREB2 Missense_Mutation p.E15G 0.40 deleterious(0.02) possibly_damaging(0.643) TCGA-L5-A8NN-01 15 90455908 90455908 C A C15orf38 Intron 0.24 TCGA-L5-A8NN-01 16 1634250 1634250 C T IFT140 Missense_Mutation p.D443N 0.25 deleterious(0.04) benign(0.127) TCGA-L5-A8NN-01 16 2103376 2103376 G T TSC2 Missense_Mutation p.D87Y 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A8NN-01 16 31500047 31500047 C T SLC5A2 Missense_Mutation p.R412C 0.42 deleterious(0.01) benign(0.098) TCGA-L5-A8NN-01 16 31539471 31539471 T A AHSP Missense_Mutation p.L4H 0.26 deleterious(0) probably_damaging(0.935) TCGA-L5-A8NN-01 16 67917919 67917919 G T EDC4 Missense_Mutation p.M1358I 0.23 deleterious(0.03) possibly_damaging(0.852) TCGA-L5-A8NN-01 16 67981292 67981292 C T SLC12A4 Missense_Mutation p.A674T 0.29 tolerated(0.27) possibly_damaging(0.819) TCGA-L5-A8NN-01 16 7760907 7760907 G A RBFOX1 3'UTR 0.40 TCGA-L5-A8NN-01 16 88781970 88781970 C G PIEZO1 3'UTR 0.60 TCGA-L5-A8NN-01 17 10304048 10304048 G T MYH8 Silent p.R1132R 0.58 TCGA-L5-A8NN-01 17 293095 293095 C T FAM101B Missense_Mutation p.V99M 0.69 deleterious(0) possibly_damaging(0.672) TCGA-L5-A8NN-01 17 31324878 31324878 A T SPACA3 3'UTR 0.32 TCGA-L5-A8NN-01 17 36922670 36922670 G A PIP4K2B 3'UTR 0.34 TCGA-L5-A8NN-01 17 3749525 3749525 T A C17orf85 5'UTR 0.10 TCGA-L5-A8NN-01 17 39535268 39535268 C T KRT34 Missense_Mutation p.R388H 0.47 deleterious(0) probably_damaging(0.951) TCGA-L5-A8NN-01 17 42636197 42636197 G T FZD2 Missense_Mutation p.A381S 0.39 tolerated(0.37) possibly_damaging(0.823) TCGA-L5-A8NN-01 17 48069206 48069206 C T DLX3 Missense_Mutation p.R180H 0.33 deleterious(0) probably_damaging(0.954) TCGA-L5-A8NN-01 17 57288948 57288948 G C SMG8 Missense_Mutation p.Q512H 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A8NN-01 17 81052284 81052284 G A METRNL Silent p.E300E 0.37 TCGA-L5-A8NN-01 18 32916155 32916156 - A ZNF24 3'UTR 0.22 TCGA-L5-A8NN-01 18 3452189 3452189 C T TGIF1 Missense_Mutation p.P71L 0.48 deleterious_low_confidence(0) benign(0) TCGA-L5-A8NN-01 18 5145754 5145754 C T C18orf42 Missense_Mutation p.G6D 0.49 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-L5-A8NN-01 18 63489349 63489349 A G CDH7 Missense_Mutation p.R220G 0.05 deleterious(0) probably_damaging(1) TCGA-L5-A8NN-01 19 1080304 1080304 C T HMHA1 Missense_Mutation p.A601V 0.68 tolerated(0.56) benign(0.005) TCGA-L5-A8NN-01 19 12461870 12461870 C A ZNF442 Nonsense_Mutation p.G177* 0.71 TCGA-L5-A8NN-01 19 16686596 16686596 C A MED26 3'UTR 0.14 TCGA-L5-A8NN-01 19 36332627 36332627 A - NPHS1 Frame_Shift_Del p.V936Sfs*12 0.12 TCGA-L5-A8NN-01 19 41704729 41704729 G A CYP2S1 Missense_Mutation p.G257E 0.35 tolerated(1) benign(0.004) TCGA-L5-A8NN-01 19 44890839 44890839 C T ZNF285 Missense_Mutation p.R523Q 0.44 tolerated(0.48) benign(0.002) TCGA-L5-A8NN-01 19 48698086 48698086 G A C19orf68 Silent p.A255A 0.37 TCGA-L5-A8NN-01 19 49142863 49142863 T G CA11 Missense_Mutation p.N195H 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NN-01 19 55258792 55258792 C T KIR2DL3 Missense_Mutation p.P224S 0.43 tolerated(0.69) benign(0.001) TCGA-L5-A8NN-01 1 154680162 154680162 G C KCNN3 3'UTR 0.38 TCGA-L5-A8NN-01 1 156640094 156640094 G T NES Missense_Mutation p.P1296T 0.72 deleterious(0) probably_damaging(1) TCGA-L5-A8NN-01 1 156849819 156849819 G A NTRK1 Missense_Mutation p.R692H 0.70 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NN-01 1 158621225 158621225 T A SPTA1 Missense_Mutation p.I1137F 0.61 deleterious(0.01) probably_damaging(0.971) TCGA-L5-A8NN-01 1 15988150 15988150 G C RSC1A1 Missense_Mutation p.R596P 0.20 deleterious(0.05) benign(0.315) TCGA-L5-A8NN-01 1 236306259 236306259 G A GPR137B Missense_Mutation p.V113I 0.17 tolerated(0.46) benign(0.003) TCGA-L5-A8NN-01 1 248637563 248637563 G T OR2T3 Missense_Mutation p.R304S 0.35 deleterious(0.05) benign(0.006) TCGA-L5-A8NN-01 1 26665795 26665795 G A AIM1L Silent p.T236T 0.46 TCGA-L5-A8NN-01 1 54412167 54412167 G A LRRC42 5'UTR 0.21 TCGA-L5-A8NN-01 20 30898258 30898258 C T KIF3B Silent p.S226S 0.32 TCGA-L5-A8NN-01 20 43043180 43043180 A C HNF4A Missense_Mutation p.I176L 0.09 tolerated(0.39) benign(0.148) TCGA-L5-A8NN-01 20 43851148 43851148 G A SEMG2 Missense_Mutation p.R292H 0.29 tolerated(0.14) benign(0.011) TCGA-L5-A8NN-01 20 44237432 44237432 C T WFDC9 Missense_Mutation p.E37K 0.21 tolerated(0.09) benign(0.241) TCGA-L5-A8NN-01 20 62572380 62572380 G A UCKL1 Missense_Mutation p.R347C 0.32 deleterious(0) possibly_damaging(0.902) TCGA-L5-A8NN-01 21 30714989 30714989 C T BACH1 Silent p.P682P 0.31 TCGA-L5-A8NN-01 21 34015720 34015720 C T SYNJ1 Missense_Mutation p.A1199T 0.40 tolerated_low_confidence(0.06) benign(0.03) TCGA-L5-A8NN-01 21 37408484 37408484 C A SETD4 Missense_Mutation p.W418C 0.51 deleterious(0.02) probably_damaging(0.951) TCGA-L5-A8NN-01 21 43256297 43256297 G T PRDM15 Nonsense_Mutation p.C767* 0.20 TCGA-L5-A8NN-01 21 47421897 47421897 C T COL6A1 Missense_Mutation p.A660V 0.67 tolerated(1) benign(0.086) TCGA-L5-A8NN-01 22 31318335 31318335 G A MORC2 3'Flank 0.59 TCGA-L5-A8NN-01 22 46449698 46449698 C A C22orf26 Silent p.R92R 0.26 TCGA-L5-A8NN-01 2 141819736 141819736 C A LRP1B Missense_Mutation p.A374S 0.13 benign(0.364) TCGA-L5-A8NN-01 2 163027548 163027548 T A FAP Missense_Mutation p.N742Y 0.25 tolerated(0.36) benign(0.003) TCGA-L5-A8NN-01 2 167142872 167142872 C T SCN9A Missense_Mutation p.E526K 0.12 tolerated(0.39) benign(0.066) TCGA-L5-A8NN-01 2 175939236 175939236 T A ATF2 3'UTR 0.10 TCGA-L5-A8NN-01 2 212242814 212242814 C G ERBB4 3'UTR 0.21 TCGA-L5-A8NN-01 2 215278867 215278867 G A VWC2L 5'UTR 0.65 TCGA-L5-A8NN-01 2 217124265 217124265 G T MARCH4 Silent p.R335R 0.39 TCGA-L5-A8NN-01 2 29023101 29023101 T C PPP1CB 3'UTR 0.14 TCGA-L5-A8NN-01 2 29240672 29240672 C T FAM179A Missense_Mutation p.R404W 0.73 deleterious(0) probably_damaging(0.977) TCGA-L5-A8NN-01 2 32379759 32379759 T C SPAST 3'UTR 0.33 TCGA-L5-A8NN-01 2 37458791 37458791 C T CEBPZ 5'UTR 0.45 TCGA-L5-A8NN-01 2 8064273 8064273 T C LINC00298 RNA 0.74 TCGA-L5-A8NN-01 2 99013128 99013128 C T CNGA3 Nonsense_Mutation p.R499* 0.13 TCGA-L5-A8NN-01 3 108326967 108326967 G T DZIP3 Nonsense_Mutation p.E22* 0.27 TCGA-L5-A8NN-01 3 126749110 126749110 G A PLXNA1 Missense_Mutation p.D1696N 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-L5-A8NN-01 3 127642564 127642564 C T KBTBD12 Silent p.V220V 0.17 TCGA-L5-A8NN-01 3 130992369 130992369 C G NEK11 Missense_Mutation p.P557A 0.31 tolerated(0.82) benign(0) TCGA-L5-A8NN-01 3 134322170 134322170 T G KY 3'UTR 0.31 TCGA-L5-A8NN-01 3 172115308 172115308 A G FNDC3B 3'UTR 0.20 TCGA-L5-A8NN-01 3 184299079 184299079 A G EPHB3 Missense_Mutation p.Y924C 0.15 deleterious(0.04) probably_damaging(0.926) TCGA-L5-A8NN-01 3 29323111 29323111 C T RBMS3 5'UTR 0.11 TCGA-L5-A8NN-01 4 110610548 110610548 G A CASP6 Nonsense_Mutation p.Q274* 0.30 TCGA-L5-A8NN-01 4 122853924 122853924 G A TRPC3 Silent p.T163T 0.48 TCGA-L5-A8NN-01 4 138451019 138451019 T A PCDH18 Missense_Mutation p.T742S 0.23 tolerated(0.95) benign(0.02) TCGA-L5-A8NN-01 4 155219058 155219058 C A DCHS2 Missense_Mutation p.K1681N 0.25 tolerated(0.22) benign(0.01) TCGA-L5-A8NN-01 4 184930364 184930364 C T STOX2 Missense_Mutation p.R125W 0.39 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NN-01 4 36212335 36212335 G A ARAP2 Silent p.S388S 0.18 TCGA-L5-A8NN-01 4 48567600 48567600 C T FRYL Missense_Mutation p.R1093K 0.12 tolerated(0.22) possibly_damaging(0.727) TCGA-L5-A8NN-01 4 74459299 74459299 G A RASSF6 Silent p.G84G 0.09 TCGA-L5-A8NN-01 4 7691291 7691291 G A SORCS2 Missense_Mutation p.A523T 0.46 deleterious(0.04) benign(0.174) TCGA-L5-A8NN-01 4 95578595 95578595 G A PDLIM5 Silent p.L523L 0.36 TCGA-L5-A8NN-01 4 96470027 96470027 G A UNC5C 5'UTR 0.36 TCGA-L5-A8NN-01 5 112174268 112174268 A C APC Missense_Mutation p.K993Q 0.29 probably_damaging(0.96) TCGA-L5-A8NN-01 5 13885264 13885264 C T DNAH5 Silent p.T939T 0.43 TCGA-L5-A8NN-01 5 140050530 140050533 AACA - WDR55 3'UTR 0.16 TCGA-L5-A8NN-01 5 140070819 140070819 T G HARS Missense_Mutation p.Q24P 0.14 tolerated(0.11) benign(0.004) TCGA-L5-A8NN-01 5 140482041 140482041 C T PCDHB3 Missense_Mutation p.S603L 0.56 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-L5-A8NN-01 5 140558872 140558872 C T PCDHB8 Silent p.N419N 0.20 TCGA-L5-A8NN-01 5 149827257 149827257 C T RPS14 Missense_Mutation p.V14I 0.58 tolerated(0.05) benign(0.001) TCGA-L5-A8NN-01 5 22142664 22142664 A C CDH12 Intron 0.26 TCGA-L5-A8NN-01 5 33441009 33441009 C T TARS 5'Flank 0.50 TCGA-L5-A8NN-01 6 160543205 160543205 G A SLC22A1 Missense_Mutation p.A80T 0.51 tolerated(0.58) benign(0.003) TCGA-L5-A8NN-01 6 32796598 32796598 G A TAP2 Intron 0.32 TCGA-L5-A8NN-01 6 37622643 37622643 C T MDGA1 Silent p.Q215Q 0.37 TCGA-L5-A8NN-01 6 51656031 51656031 C T PKHD1 Intron 0.31 TCGA-L5-A8NN-01 7 100676491 100676491 C G MUC17 Missense_Mutation p.N598K 0.27 benign(0.004) TCGA-L5-A8NN-01 7 104753227 104753227 A G KMT2E Missense_Mutation p.H1675R 0.25 deleterious_low_confidence(0) benign(0.03) TCGA-L5-A8NN-01 7 104753228 104753228 C A KMT2E Missense_Mutation p.H1675Q 0.25 deleterious_low_confidence(0) benign(0.043) TCGA-L5-A8NN-01 7 106509583 106509583 C T PIK3CG Missense_Mutation p.P526L 0.23 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NN-01 7 123302462 123302462 C T LMOD2 Silent p.N274N 0.33 TCGA-L5-A8NN-01 7 150819833 150819833 T C AGAP3 Intron 0.35 TCGA-L5-A8NN-01 7 157387999 157387999 G A PTPRN2 Silent p.H809H 0.35 TCGA-L5-A8NN-01 7 19155441 19155441 G T TWIST1 3'UTR 0.23 TCGA-L5-A8NN-01 7 2854518 2854518 C T GNA12 Intron 0.16 TCGA-L5-A8NN-01 7 37256263 37256263 G A ELMO1 Missense_Mutation p.S273F 0.71 deleterious(0.02) possibly_damaging(0.507) TCGA-L5-A8NN-01 7 50135836 50135836 A C C7orf72 Missense_Mutation p.N52T 0.45 deleterious(0.02) benign(0.088) TCGA-L5-A8NN-01 7 92764139 92764139 T C SAMD9L Silent p.E382E 0.32 TCGA-L5-A8NN-01 8 102701518 102701518 C T NCALD 3'UTR 0.17 TCGA-L5-A8NN-01 8 117858853 117858853 G C RAD21 3'UTR 0.12 TCGA-L5-A8NN-01 8 121256240 121256240 A G COL14A1 Silent p.G824G 0.26 TCGA-L5-A8NN-01 8 144896032 144896032 G A SCRIB Silent p.C104C 0.24 TCGA-L5-A8NN-01 8 144896033 144896033 C A SCRIB Missense_Mutation p.C104F 0.24 probably_damaging(0.999) TCGA-L5-A8NN-01 8 145755669 145755669 G A ARHGAP39 3'UTR 0.40 TCGA-L5-A8NN-01 8 26237201 26237201 C A BNIP3L 5'Flank 0.85 TCGA-L5-A8NN-01 8 42919271 42919271 C T FNTA Missense_Mutation p.A105V 0.07 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NN-01 8 69021848 69021848 C G PREX2 Missense_Mutation p.Q1046E 0.46 deleterious(0.02) benign(0.049) TCGA-L5-A8NN-01 8 74231402 74231402 G T RDH10 Missense_Mutation p.L199F 0.40 tolerated(0.14) probably_damaging(0.993) TCGA-L5-A8NN-01 8 87479623 87479623 G C WWP1 3'UTR 0.47 TCGA-L5-A8NN-01 9 100684711 100684711 G A C9orf156 Missense_Mutation p.A22V 0.64 deleterious(0.01) benign(0.093) TCGA-L5-A8NN-01 9 108153287 108153287 G A SLC44A1 3'UTR 0.10 TCGA-L5-A8NN-01 9 112694236 112694236 C T PALM2-AKAP2 Missense_Mutation p.P142S 0.54 tolerated(0.4) benign(0.274) TCGA-L5-A8NN-01 9 125377488 125377488 C A OR1Q1 Missense_Mutation p.L158M 0.13 tolerated(0.05) probably_damaging(0.999) TCGA-L5-A8NN-01 9 130705463 130705463 C A FAM102A 3'UTR 0.52 TCGA-L5-A8NN-01 9 133572976 133572976 G A EXOSC2 Missense_Mutation p.G78S 0.61 deleterious(0.04) probably_damaging(0.963) TCGA-L5-A8NN-01 9 21974724 21974724 C T CDKN2A Missense_Mutation p.G35R 0.12 tolerated(0.11) probably_damaging(0.975) TCGA-L5-A8NN-01 9 86584095 86584095 T C HNRNPK 3'UTR 0.42 TCGA-L5-A8NN-01 X 10180692 10180692 C T CLCN4 Silent p.L525L 0.71 TCGA-L5-A8NN-01 X 123164976 123164977 - T STAG2 Splice_Site p.X96_splice 0.47 TCGA-L5-A8NN-01 X 137713860 137713860 T G FGF13 3'Flank 0.44 TCGA-L5-A8NN-01 X 153043806 153043806 C A SRPK3 5'Flank 0.31 TCGA-L5-A8NN-01 X 29973625 29973625 C T IL1RAPL1 Silent p.A593A 0.71 TCGA-L5-A8NN-01 X 53963511 53963511 C G PHF8 3'UTR 0.07 TCGA-L5-A8NN-01 X 70472901 70472901 C T ZMYM3 Missense_Mutation p.D69N 0.28 tolerated_low_confidence(0.68) benign(0.24) TCGA-L5-A8NQ-01 10 108439438 108439438 C G SORCS1 Missense_Mutation p.G539R 0.10 deleterious(0.03) probably_damaging(0.998) TCGA-L5-A8NQ-01 10 119765535 119765535 C T RAB11FIP2 3'UTR 0.10 TCGA-L5-A8NQ-01 10 120792173 120792173 G A NANOS1 3'UTR 0.08 TCGA-L5-A8NQ-01 10 123842878 123842878 G C TACC2 Missense_Mutation p.R288T 0.08 benign(0.1) TCGA-L5-A8NQ-01 10 127529527 127529527 C G DHX32 Missense_Mutation p.E528Q 0.10 tolerated(0.12) benign(0.039) TCGA-L5-A8NQ-01 10 127726813 127726813 C T ADAM12 Silent p.P785P 0.19 TCGA-L5-A8NQ-01 10 13380806 13380806 T C SEPHS1 Missense_Mutation p.I66V 0.14 tolerated(0.19) benign(0.025) TCGA-L5-A8NQ-01 10 135371408 135371408 G C SYCE1 Missense_Mutation p.L112V 0.09 deleterious(0.02) possibly_damaging(0.548) TCGA-L5-A8NQ-01 10 14563922 14563922 C G FAM107B Missense_Mutation p.K250N 0.09 deleterious(0.03) probably_damaging(0.973) TCGA-L5-A8NQ-01 10 17757553 17757553 C T STAM 3'UTR 0.17 TCGA-L5-A8NQ-01 10 32327107 32327107 C T KIF5B Missense_Mutation p.R161Q 0.16 deleterious(0) benign(0.236) TCGA-L5-A8NQ-01 10 73492057 73492057 C T CDH23 Silent p.L1348L 0.10 TCGA-L5-A8NQ-01 10 74953335 74953335 G A FAM149B1 Missense_Mutation p.E176K 0.08 tolerated(0.05) benign(0.286) TCGA-L5-A8NQ-01 10 75672811 75672811 G A PLAU Missense_Mutation p.R108K 0.12 tolerated(0.28) possibly_damaging(0.827) TCGA-L5-A8NQ-01 10 77158212 77158212 C G ZNF503 3'UTR 0.16 TCGA-L5-A8NQ-01 10 95085666 95085666 G A MYOF Missense_Mutation p.H1730Y 0.12 tolerated(0.22) benign(0.004) TCGA-L5-A8NQ-01 10 95353631 95353631 G A RBP4 Missense_Mutation p.R173W 0.23 deleterious(0) probably_damaging(0.981) TCGA-L5-A8NQ-01 11 107207409 107207409 C G CWF19L2 Missense_Mutation p.E745Q 0.10 deleterious(0.03) benign(0.314) TCGA-L5-A8NQ-01 11 1079734 1079734 G C MUC2 Silent p.V317V 0.07 TCGA-L5-A8NQ-01 11 108216597 108216597 G A ATM Missense_Mutation p.R2849Q 0.08 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NQ-01 11 14487906 14487906 C G COPB1 Missense_Mutation p.D738H 0.13 deleterious(0) probably_damaging(1) TCGA-L5-A8NQ-01 11 18014501 18014501 G C SERGEF Nonsense_Mutation p.S221* 0.07 TCGA-L5-A8NQ-01 11 30034880 30034880 G C KCNA4 5'UTR 0.11 TCGA-L5-A8NQ-01 11 373228 373228 G A B4GALNT4 Silent p.S191S 0.08 TCGA-L5-A8NQ-01 11 40137176 40137176 C G LRRC4C Missense_Mutation p.E223Q 0.21 deleterious(0.04) possibly_damaging(0.859) TCGA-L5-A8NQ-01 11 5009524 5009524 G C MMP26 Missense_Mutation p.G28A 0.10 tolerated(0.29) benign(0.336) TCGA-L5-A8NQ-01 11 56044027 56044027 C T OR5T1 Missense_Mutation p.R305W 0.17 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 11 5969263 5969263 G C OR56A3 Silent p.V229V 0.17 TCGA-L5-A8NQ-01 11 60621068 60621068 G A PTGDR2 Missense_Mutation p.S43L 0.07 tolerated(0.05) possibly_damaging(0.478) TCGA-L5-A8NQ-01 11 64940167 64940167 G C SPDYC Missense_Mutation p.E177Q 0.14 tolerated(0.13) possibly_damaging(0.824) TCGA-L5-A8NQ-01 11 66108786 66108786 C G BRMS1 Silent p.L83L 0.13 TCGA-L5-A8NQ-01 11 66384308 66384308 C T RBM14-RBM4 Silent p.F39F 0.16 TCGA-L5-A8NQ-01 11 69063413 69063413 G A MYEOV Missense_Mutation p.G166R 0.79 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-L5-A8NQ-01 11 72700022 72700022 C T FCHSD2 Missense_Mutation p.D170N 0.10 deleterious(0) possibly_damaging(0.907) TCGA-L5-A8NQ-01 11 73020556 73020556 G A ARHGEF17 Silent p.G291G 0.24 TCGA-L5-A8NQ-01 12 109273444 109273444 C T DAO 5'Flank 0.12 TCGA-L5-A8NQ-01 12 111157791 111157791 C G PPP1CC 3'UTR 0.11 TCGA-L5-A8NQ-01 12 27628521 27628521 G A SMCO2 Silent p.L123L 0.10 TCGA-L5-A8NQ-01 12 27829365 27829365 G C PPFIBP1 Missense_Mutation p.R489T 0.10 tolerated(0.25) benign(0.056) TCGA-L5-A8NQ-01 12 30881712 30881712 T A CAPRIN2 Missense_Mutation p.N551I 0.12 tolerated(0.16) benign(0.22) TCGA-L5-A8NQ-01 12 39696800 39696800 C A KIF21A Missense_Mutation p.K1566N 0.08 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NQ-01 12 41423007 41423007 A G CNTN1 Missense_Mutation p.Q989R 0.13 tolerated(0.1) benign(0.017) TCGA-L5-A8NQ-01 12 46594904 46594904 A G SLC38A1 Missense_Mutation p.I327T 0.08 tolerated(0.26) benign(0.197) TCGA-L5-A8NQ-01 12 48491881 48491881 C G SENP1 Missense_Mutation p.D11H 0.11 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NQ-01 12 51319145 51319145 C T METTL7A Silent p.I108I 0.10 TCGA-L5-A8NQ-01 12 53613943 53613943 C T RARG Intron 0.09 TCGA-L5-A8NQ-01 12 54020157 54020157 C A ATF7 5'UTR 0.09 TCGA-L5-A8NQ-01 12 5841762 5841762 C G ANO2 Missense_Mutation p.R490P 0.14 tolerated(0.28) possibly_damaging(0.884) TCGA-L5-A8NQ-01 12 6602314 6602314 C T MRPL51 5'UTR 0.07 TCGA-L5-A8NQ-01 12 69633375 69633375 G C CPSF6 5'UTR 0.15 TCGA-L5-A8NQ-01 12 8329832 8329832 C T ZNF705A Missense_Mutation p.R186C 0.05 tolerated(0.2) benign(0.002) TCGA-L5-A8NQ-01 12 9243977 9243977 G A A2M Silent p.T763T 0.09 TCGA-L5-A8NQ-01 12 97045517 97045517 C G C12orf55 Missense_Mutation p.S1675C 0.10 tolerated(0.2) benign(0.006) TCGA-L5-A8NQ-01 13 100909873 100909873 C T PCCA Missense_Mutation p.S221L 0.22 deleterious(0.01) probably_damaging(0.942) TCGA-L5-A8NQ-01 13 109318403 109318403 C A MYO16 Missense_Mutation p.F44L 0.33 tolerated(0.93) benign(0.001) TCGA-L5-A8NQ-01 13 113140013 113140013 G C TUBGCP3 3'UTR 0.13 TCGA-L5-A8NQ-01 13 20216300 20216300 G A MPHOSPH8 Missense_Mutation p.D87N 0.21 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-L5-A8NQ-01 13 21265264 21265264 G A IFT88 Missense_Mutation p.E818K 0.19 deleterious(0.05) benign(0.074) TCGA-L5-A8NQ-01 13 36382446 36382446 T G DCLK1 Missense_Mutation p.D593A 0.08 tolerated(0.63) possibly_damaging(0.728) TCGA-L5-A8NQ-01 13 38211354 38211354 G A TRPC4 Nonsense_Mutation p.Q879* 0.29 TCGA-L5-A8NQ-01 14 20863723 20863723 C T TEP1 Missense_Mutation p.R605H 0.12 tolerated(0.54) benign(0.214) TCGA-L5-A8NQ-01 14 20898456 20898456 C T KLHL33 Missense_Mutation p.E127K 0.14 tolerated(0.24) benign(0.243) TCGA-L5-A8NQ-01 14 23354124 23354124 C G REM2 Missense_Mutation p.F115L 0.09 tolerated(0.35) possibly_damaging(0.447) TCGA-L5-A8NQ-01 14 39502532 39502532 C A SEC23A Nonsense_Mutation p.E737* 0.10 TCGA-L5-A8NQ-01 14 50319482 50319482 G A NEMF 5'UTR 0.24 TCGA-L5-A8NQ-01 14 57753022 57753022 C G AP5M1 Missense_Mutation p.P459A 0.08 tolerated(0.19) benign(0.032) TCGA-L5-A8NQ-01 14 72945037 72945037 G C RGS6 Missense_Mutation p.S285T 0.14 tolerated(0.14) benign(0.02) TCGA-L5-A8NQ-01 14 74179248 74179248 C G PNMA1 3'UTR 0.10 TCGA-L5-A8NQ-01 14 74551166 74551166 C T ALDH6A1 5'UTR 0.08 TCGA-L5-A8NQ-01 14 75388118 75388118 C T RPS6KL1 Missense_Mutation p.D43N 0.25 deleterious(0.01) possibly_damaging(0.867) TCGA-L5-A8NQ-01 14 94400972 94400972 G T ASB2 3'UTR 0.18 TCGA-L5-A8NQ-01 14 94404059 94404059 T C ASB2 Missense_Mutation p.I586V 0.07 tolerated(0.23) benign(0.05) TCGA-L5-A8NQ-01 15 101853633 101853633 C A PCSK6 Nonsense_Mutation p.E882* 0.08 TCGA-L5-A8NQ-01 15 26790056 26790056 G A GABRB3 3'UTR 0.08 TCGA-L5-A8NQ-01 15 28419589 28419589 G A HERC2 Missense_Mutation p.P3337S 0.28 benign(0.213) TCGA-L5-A8NQ-01 15 31253256 31253256 G A MTMR10 Missense_Mutation p.P196S 0.10 tolerated(0.18) benign(0) TCGA-L5-A8NQ-01 15 48719785 48719785 C T FBN1 Missense_Mutation p.G2395R 0.11 probably_damaging(1) TCGA-L5-A8NQ-01 15 56207921 56207921 G C NEDD4 Missense_Mutation p.S370C 0.07 tolerated_low_confidence(0.1) possibly_damaging(0.513) TCGA-L5-A8NQ-01 15 59814456 59814456 A G FAM81A 3'UTR 0.06 TCGA-L5-A8NQ-01 15 63419078 63419078 G C LACTB Missense_Mutation p.E149Q 0.05 deleterious(0) probably_damaging(0.984) TCGA-L5-A8NQ-01 15 64452363 64452363 G A PPIB Missense_Mutation p.R95C 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 15 67835662 67835662 C G MAP2K5 5'UTR 0.12 TCGA-L5-A8NQ-01 15 75664135 75664135 C T SIN3A 3'UTR 0.10 TCGA-L5-A8NQ-01 15 77425505 77425505 C T PEAK1 Missense_Mutation p.D1307N 0.05 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A8NQ-01 15 77907918 77907918 C G LINGO1 Missense_Mutation p.E111Q 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A8NQ-01 15 81558085 81558085 C T IL16 Silent p.L169L 0.06 TCGA-L5-A8NQ-01 15 81561931 81561931 C G IL16 Missense_Mutation p.S206C 0.11 tolerated(0.2) possibly_damaging(0.867) TCGA-L5-A8NQ-01 15 81595959 81595959 G A IL16 Missense_Mutation p.G1130R 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A8NQ-01 15 90193070 90193070 G A KIF7 Missense_Mutation p.S144F 0.06 deleterious(0) probably_damaging(1) TCGA-L5-A8NQ-01 15 90992790 90992790 G C IQGAP1 Splice_Site p.X360_splice 0.06 TCGA-L5-A8NQ-01 15 91292721 91292721 G A BLM Missense_Mutation p.E75K 0.06 tolerated(0.47) benign(0.026) TCGA-L5-A8NQ-01 16 11643480 11643480 G A LITAF 3'UTR 0.13 TCGA-L5-A8NQ-01 16 21289590 21289590 C T CRYM 5'UTR 0.08 TCGA-L5-A8NQ-01 16 21289597 21289597 C T CRYM 5'UTR 0.07 TCGA-L5-A8NQ-01 16 21858850 21858850 G C NPIPB4 Missense_Mutation p.L45V 0.10 possibly_damaging(0.672) TCGA-L5-A8NQ-01 16 31341910 31341910 C T ITGAM Missense_Mutation p.A1088V 0.11 deleterious(0.05) benign(0.009) TCGA-L5-A8NQ-01 16 34713056 34713056 G C RP11-80F22.9 RNA 0.18 TCGA-L5-A8NQ-01 16 57171066 57171066 G C CPNE2 Missense_Mutation p.D392H 0.10 deleterious(0) possibly_damaging(0.722) TCGA-L5-A8NQ-01 16 58713919 58713919 C T SLC38A7 Missense_Mutation p.E38K 0.22 tolerated(0.26) benign(0.031) TCGA-L5-A8NQ-01 16 66600077 66600077 G A CKLF 3'Flank 0.11 TCGA-L5-A8NQ-01 16 69600040 69600040 C G NFAT5 5'UTR 0.30 TCGA-L5-A8NQ-01 16 70154466 70154466 C T PDPR Missense_Mutation p.S24F 0.09 tolerated(0.22) benign(0.068) TCGA-L5-A8NQ-01 16 70551570 70551570 C A COG4 Nonsense_Mutation p.E110* 0.10 TCGA-L5-A8NQ-01 16 74725292 74725292 G A MLKL Missense_Mutation p.S202L 0.14 tolerated(0.25) benign(0.003) TCGA-L5-A8NQ-01 17 10416983 10416983 G A MYH1 Silent p.F255F 0.12 TCGA-L5-A8NQ-01 17 15995266 15995266 T G NCOR1 Missense_Mutation p.Q976P 0.13 probably_damaging(0.99) TCGA-L5-A8NQ-01 17 37565965 37565965 C G MED1 Missense_Mutation p.D837H 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 17 44109060 44109060 G A KANSL1 Missense_Mutation p.P1034S 0.11 deleterious(0) probably_damaging(1) TCGA-L5-A8NQ-01 17 47299509 47299509 G A ABI3 Missense_Mutation p.E287K 0.09 tolerated(0.71) benign(0.292) TCGA-L5-A8NQ-01 17 48261771 48261771 G C COL1A1 3'UTR 0.18 TCGA-L5-A8NQ-01 17 56349125 56349125 C G MPO Missense_Mutation p.D641H 0.30 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 17 56585555 56585555 C T MTMR4 Missense_Mutation p.R211H 0.12 deleterious(0) probably_damaging(1) TCGA-L5-A8NQ-01 17 74326692 74326692 G A PRPSAP1 Silent p.F173F 0.21 TCGA-L5-A8NQ-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.19 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NQ-01 17 78445639 78445639 C T NPTX1 Missense_Mutation p.G324R 0.09 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NQ-01 18 12725469 12725469 G C PSMG2 Missense_Mutation p.W245S 0.12 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NQ-01 18 29036436 29036436 G C DSG3 Missense_Mutation p.E28Q 0.11 tolerated(0.13) benign(0.017) TCGA-L5-A8NQ-01 18 29039116 29039116 G C DSG3 Missense_Mutation p.E165Q 0.05 tolerated(0.05) probably_damaging(0.936) TCGA-L5-A8NQ-01 18 33779937 33779937 C T MOCOS Silent p.L197L 0.10 TCGA-L5-A8NQ-01 18 34824441 34824441 G A CELF4 3'UTR 0.07 TCGA-L5-A8NQ-01 18 55020185 55020185 G A ST8SIA3 Silent p.E36E 0.10 TCGA-L5-A8NQ-01 18 9945046 9945046 G A VAPA Silent p.E181E 0.10 TCGA-L5-A8NQ-01 19 11040151 11040151 G A C19orf52 Missense_Mutation p.D186N 0.06 tolerated(0.16) benign(0.159) TCGA-L5-A8NQ-01 19 12383473 12383473 C T ZNF44 Missense_Mutation p.E581K 0.08 tolerated(0.16) benign(0.173) TCGA-L5-A8NQ-01 19 14862359 14862359 C G EMR2 Missense_Mutation p.S638T 0.13 tolerated(0.33) probably_damaging(0.93) TCGA-L5-A8NQ-01 19 15366318 15366318 C T BRD4 Missense_Mutation p.E613K 0.12 benign(0.292) TCGA-L5-A8NQ-01 19 16268428 16268428 G A HSH2D 3'Flank 0.07 TCGA-L5-A8NQ-01 19 19760549 19760549 C T ATP13A1 Splice_Site p.X845_splice 0.09 TCGA-L5-A8NQ-01 19 2290967 2290967 G T LINGO3 Missense_Mutation p.A270E 0.29 tolerated(0.11) possibly_damaging(0.585) TCGA-L5-A8NQ-01 19 35451802 35451802 G A ZNF792 Silent p.L44L 0.10 TCGA-L5-A8NQ-01 19 36106012 36106012 G A HAUS5 Silent p.Q96Q 0.10 TCGA-L5-A8NQ-01 19 37238823 37238823 G A ZNF850 Missense_Mutation p.P1040L 0.14 tolerated(0.36) possibly_damaging(0.889) TCGA-L5-A8NQ-01 19 39899813 39899813 C T ZFP36 3'UTR 0.26 TCGA-L5-A8NQ-01 19 39979191 39979191 A G TIMM50 Missense_Mutation p.N392S 0.10 tolerated(0.66) benign(0.024) TCGA-L5-A8NQ-01 19 40740796 40740796 G A AKT2 Intron 0.08 TCGA-L5-A8NQ-01 19 42408469 42408469 G C ARHGEF1 Missense_Mutation p.D714H 0.16 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 19 42840240 42840240 C T MEGF8 Missense_Mutation p.S329L 0.11 tolerated(0.92) benign(0.002) TCGA-L5-A8NQ-01 19 49385305 49385305 G T TULP2 Silent p.I477I 0.21 TCGA-L5-A8NQ-01 19 49513866 49513866 C G RUVBL2 Nonsense_Mutation p.S262* 0.22 TCGA-L5-A8NQ-01 19 50251727 50251727 C G TSKS Splice_Site p.X134_splice 0.18 TCGA-L5-A8NQ-01 19 55087566 55087566 C A LILRA2 Silent p.L415L 0.11 TCGA-L5-A8NQ-01 19 57647388 57647388 G A ZIM3 Missense_Mutation p.S106L 0.10 tolerated(0.81) benign(0.002) TCGA-L5-A8NQ-01 19 9062471 9062471 C G MUC16 Missense_Mutation p.L8325F 0.19 unknown(0) TCGA-L5-A8NQ-01 19 9449954 9449954 G C ZNF559 Missense_Mutation p.R40T 0.11 deleterious(0.01) possibly_damaging(0.849) TCGA-L5-A8NQ-01 1 110091283 110091283 G C GNAI3 5'UTR 0.05 TCGA-L5-A8NQ-01 1 110135565 110135565 C T GNAI3 3'UTR 0.19 TCGA-L5-A8NQ-01 1 110765753 110765753 C G KCNC4 Silent p.T282T 0.08 TCGA-L5-A8NQ-01 1 114517135 114517135 C G HIPK1 3'UTR 0.20 TCGA-L5-A8NQ-01 1 13695695 13695695 G A PRAMEF19 Missense_Mutation p.R424C 0.12 possibly_damaging(0.491) TCGA-L5-A8NQ-01 1 152749016 152749016 G A LCE1F Missense_Mutation p.G57R 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-L5-A8NQ-01 1 155289433 155289433 A G FDPS Missense_Mutation p.N293S 0.10 tolerated(0.22) benign(0.017) TCGA-L5-A8NQ-01 1 156621307 156621307 G C BCAN Missense_Mutation p.D375H 0.11 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A8NQ-01 1 156621337 156621337 G A BCAN Missense_Mutation p.E385K 0.08 tolerated(0.05) probably_damaging(0.993) TCGA-L5-A8NQ-01 1 159163319 159163319 C T CADM3 Silent p.L197L 0.16 TCGA-L5-A8NQ-01 1 160098826 160098826 C T ATP1A2 Missense_Mutation p.L425F 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-L5-A8NQ-01 1 173933996 173933996 G A RC3H1 Missense_Mutation p.P533S 0.11 tolerated(0.1) probably_damaging(0.998) TCGA-L5-A8NQ-01 1 190066856 190066856 A G BRINP3 3'UTR 0.12 TCGA-L5-A8NQ-01 1 190449679 190449679 G A BRINP3 5'Flank 0.12 TCGA-L5-A8NQ-01 1 21014222 21014222 C G KIF17 Missense_Mutation p.E533Q 0.19 tolerated_low_confidence(0.05) possibly_damaging(0.611) TCGA-L5-A8NQ-01 1 224573319 224573319 G C WDR26 3'UTR 0.14 TCGA-L5-A8NQ-01 1 228529252 228529252 A T OBSCN Missense_Mutation p.I6948F 0.11 possibly_damaging(0.804) TCGA-L5-A8NQ-01 1 23688650 23688650 G A ZNF436 Nonsense_Mutation p.Q409* 0.10 TCGA-L5-A8NQ-01 1 240458161 240458161 C A FMN2 Missense_Mutation p.T1398N 0.08 possibly_damaging(0.812) TCGA-L5-A8NQ-01 1 242263986 242263986 A T PLD5 Missense_Mutation p.D446E 0.08 tolerated(0.15) possibly_damaging(0.695) TCGA-L5-A8NQ-01 1 33237497 33237497 C T KIAA1522 Missense_Mutation p.S906L 0.31 tolerated(0.11) benign(0.362) TCGA-L5-A8NQ-01 1 35480750 35480750 G C ZMYM6 Missense_Mutation p.P148A 0.07 tolerated(0.1) possibly_damaging(0.865) TCGA-L5-A8NQ-01 1 35480759 35480759 T C ZMYM6 Missense_Mutation p.I145V 0.08 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NQ-01 1 36931763 36931763 C G CSF3R 3'UTR 0.12 TCGA-L5-A8NQ-01 1 42902173 42902173 C G ZMYND12 Missense_Mutation p.R212S 0.07 tolerated(0.34) benign(0.014) TCGA-L5-A8NQ-01 1 44137335 44137335 C T KDM4A Missense_Mutation p.S508L 0.12 tolerated(0.29) benign(0.004) TCGA-L5-A8NQ-01 1 45110739 45110739 G A RNF220 Silent p.R432R 0.06 TCGA-L5-A8NQ-01 1 48705040 48705040 G A SLC5A9 Missense_Mutation p.R528H 0.13 deleterious(0.01) benign(0.082) TCGA-L5-A8NQ-01 1 62920905 62920905 G C DOCK7 3'UTR 0.31 TCGA-L5-A8NQ-01 1 85506834 85506834 C T MCOLN3 Silent p.Q85Q 0.16 TCGA-L5-A8NQ-01 1 86820363 86820363 C T ODF2L Silent p.Q539Q 0.16 TCGA-L5-A8NQ-01 20 30919335 30919335 C T KIF3B 3'UTR 0.07 TCGA-L5-A8NQ-01 20 31024392 31024392 G A ASXL1 Missense_Mutation p.D1293N 0.14 tolerated(0.82) benign(0.004) TCGA-L5-A8NQ-01 20 33735139 33735139 C T EDEM2 5'UTR 0.10 TCGA-L5-A8NQ-01 20 34219461 34219461 G C CPNE1 Missense_Mutation p.L228V 0.07 deleterious(0.01) probably_damaging(0.94) TCGA-L5-A8NQ-01 20 34556687 34556687 G A CNBD2 Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) possibly_damaging(0.882) TCGA-L5-A8NQ-01 20 36855583 36855583 G A KIAA1755 Silent p.L675L 0.18 TCGA-L5-A8NQ-01 20 37378784 37378784 C T ACTR5 Silent p.F169F 0.06 TCGA-L5-A8NQ-01 20 37536771 37536771 C T PPP1R16B Nonsense_Mutation p.Q377* 0.14 TCGA-L5-A8NQ-01 20 43243230 43243230 C T PKIG Silent p.F11F 0.11 TCGA-L5-A8NQ-01 20 47587679 47587679 G A ARFGEF2 Missense_Mutation p.V405M 0.19 tolerated(0.05) benign(0.207) TCGA-L5-A8NQ-01 20 47710696 47710697 - A CSE1L Frame_Shift_Ins p.I825Nfs*5 0.21 TCGA-L5-A8NQ-01 20 48604987 48604987 C A SNAI1 3'UTR 0.19 TCGA-L5-A8NQ-01 20 61834342 61834342 T A YTHDF1 Missense_Mutation p.Y317F 0.17 tolerated(0.61) benign(0.001) TCGA-L5-A8NQ-01 20 62194139 62194139 G A HELZ2 Silent p.L2012L 0.06 TCGA-L5-A8NQ-01 21 33346945 33346945 C G HUNK Missense_Mutation p.I363M 0.14 deleterious(0.03) possibly_damaging(0.757) TCGA-L5-A8NQ-01 21 34444062 34444062 C A OLIG1 3'UTR 0.24 TCGA-L5-A8NQ-01 21 34655516 34655516 G C IL10RB Missense_Mutation p.E206Q 0.08 tolerated(0.4) benign(0.014) TCGA-L5-A8NQ-01 21 40601246 40601246 G A BRWD1 Silent p.F1039F 0.14 TCGA-L5-A8NQ-01 21 45404588 45404588 T G AGPAT3 3'UTR 0.18 TCGA-L5-A8NQ-01 21 47542073 47542073 G A COL6A2 Splice_Site p.X524_splice 0.10 TCGA-L5-A8NQ-01 22 21062288 21062288 G C PI4KA 3'UTR 0.29 TCGA-L5-A8NQ-01 22 24121532 24121532 G A MMP11 Silent p.L89L 0.20 TCGA-L5-A8NQ-01 22 26830127 26830127 C T ASPHD2 Silent p.D182D 0.24 TCGA-L5-A8NQ-01 22 31494798 31494798 G A SMTN Missense_Mutation p.E769K 0.31 deleterious(0.01) benign(0.42) TCGA-L5-A8NQ-01 22 41633274 41633274 G A CHADL Missense_Mutation p.S601L 0.28 deleterious(0) probably_damaging(0.971) TCGA-L5-A8NQ-01 22 47069633 47069633 G A GRAMD4 Missense_Mutation p.A436T 0.16 tolerated(0.42) benign(0.001) TCGA-L5-A8NQ-01 22 50282293 50282293 C T ZBED4 3'UTR 0.18 TCGA-L5-A8NQ-01 2 113788674 113788674 C G IL36B Silent p.L24L 0.09 TCGA-L5-A8NQ-01 2 118732778 118732778 G A CCDC93 Nonsense_Mutation p.R246* 0.12 TCGA-L5-A8NQ-01 2 128757988 128757988 T A SAP130 Missense_Mutation p.I330F 0.09 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-L5-A8NQ-01 2 131100504 131100504 A G IMP4 5'UTR 0.12 TCGA-L5-A8NQ-01 2 145182392 145182392 G A ZEB2 Missense_Mutation p.T125M 0.10 tolerated(0.06) benign(0.143) TCGA-L5-A8NQ-01 2 159533373 159533373 T G PKP4 Missense_Mutation p.Y1084D 0.12 tolerated(0.06) possibly_damaging(0.634) TCGA-L5-A8NQ-01 2 178084948 178084948 C A HNRNPA3 3'Flank 0.10 TCGA-L5-A8NQ-01 2 179415774 179415774 C G TTN Missense_Mutation p.R30495T 0.10 TCGA-L5-A8NQ-01 2 179547519 179547519 A T TTN Missense_Mutation p.F11000Y 0.14 TCGA-L5-A8NQ-01 2 191896228 191896228 C G STAT4 Missense_Mutation p.E687Q 0.12 deleterious(0.03) possibly_damaging(0.544) TCGA-L5-A8NQ-01 2 201363707 201363707 C G KCTD18 Missense_Mutation p.R158T 0.10 deleterious(0.02) possibly_damaging(0.556) TCGA-L5-A8NQ-01 2 202725648 202725648 G A CDK15 Intron 0.14 TCGA-L5-A8NQ-01 2 209307162 209307162 C A PTH2R Missense_Mutation p.A162D 0.08 deleterious(0) probably_damaging(0.989) TCGA-L5-A8NQ-01 2 210543349 210543349 C A MAP2 Missense_Mutation p.L106M 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 2 211300158 211300158 C G LANCL1 Missense_Mutation p.G359A 0.07 deleterious(0) probably_damaging(1) TCGA-L5-A8NQ-01 2 219129195 219129195 G A AAMP 3'UTR 0.13 TCGA-L5-A8NQ-01 2 227872752 227872752 G A COL4A4 Silent p.I1597I 0.07 TCGA-L5-A8NQ-01 2 228883348 228883348 G A SPHKAP Missense_Mutation p.T741I 0.15 tolerated(0.08) benign(0.013) TCGA-L5-A8NQ-01 2 229890767 229890767 C T PID1 Missense_Mutation p.E110K 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-L5-A8NQ-01 2 233785105 233785105 G A NGEF Silent p.I239I 0.11 TCGA-L5-A8NQ-01 2 234355361 234355361 G A DGKD Nonsense_Mutation p.W446* 0.22 TCGA-L5-A8NQ-01 2 235405081 235405081 C T ARL4C Silent p.E50E 0.15 TCGA-L5-A8NQ-01 2 32382422 32382422 G A SPAST 3'UTR 0.12 TCGA-L5-A8NQ-01 2 32475208 32475208 A T NLRC4 Missense_Mutation p.F575L 0.13 deleterious(0.01) possibly_damaging(0.888) TCGA-L5-A8NQ-01 2 44547672 44547672 A T SLC3A1 Missense_Mutation p.N651I 0.14 deleterious(0.03) benign(0.342) TCGA-L5-A8NQ-01 2 54558106 54558106 G A C2orf73 5'UTR 0.10 TCGA-L5-A8NQ-01 2 64211108 64211108 G A VPS54 Missense_Mutation p.P9L 0.20 tolerated_low_confidence(0.14) unknown(0) TCGA-L5-A8NQ-01 2 70900406 70900406 G T ADD2 Intron 0.15 TCGA-L5-A8NQ-01 2 71188135 71188135 G A ATP6V1B1 Missense_Mutation p.V224I 0.08 tolerated(0.08) benign(0.325) TCGA-L5-A8NQ-01 2 73143662 73143662 C T EMX1 5'Flank 0.12 TCGA-L5-A8NQ-01 2 74779641 74779641 C T LOXL3 Missense_Mutation p.G41R 0.18 tolerated(0.59) benign(0.006) TCGA-L5-A8NQ-01 2 85843346 85843346 C G USP39 Missense_Mutation p.R10G 0.09 deleterious_low_confidence(0.02) benign(0.111) TCGA-L5-A8NQ-01 2 9770479 9770479 C T YWHAQ Missense_Mutation p.E35K 0.21 tolerated_low_confidence(0.08) benign(0.006) TCGA-L5-A8NQ-01 3 125745256 125745256 C G SLC41A3 Missense_Mutation p.E174Q 0.07 tolerated(0.24) benign(0.129) TCGA-L5-A8NQ-01 3 134089688 134089688 C T AMOTL2 Silent p.L196L 0.19 TCGA-L5-A8NQ-01 3 138478028 138478028 G A PIK3CB Missense_Mutation p.S53F 0.07 tolerated(0.09) possibly_damaging(0.722) TCGA-L5-A8NQ-01 3 139062880 139062880 C T MRPS22 Silent p.L4L 0.13 TCGA-L5-A8NQ-01 3 14154317 14154317 A G CHCHD4 3'UTR 0.09 TCGA-L5-A8NQ-01 3 142218487 142218487 C A ATR Nonsense_Mutation p.E1788* 0.07 TCGA-L5-A8NQ-01 3 148759441 148759441 C G HLTF Missense_Mutation p.E738Q 0.17 tolerated(0.09) probably_damaging(0.964) TCGA-L5-A8NQ-01 3 186299223 186299223 G C DNAJB11 Missense_Mutation p.E174Q 0.14 deleterious(0.03) benign(0.125) TCGA-L5-A8NQ-01 3 189614675 189614675 C A TP63 3'UTR 0.09 TCGA-L5-A8NQ-01 3 25639004 25639004 C T RARB 3'UTR 0.12 TCGA-L5-A8NQ-01 3 26752197 26752197 C G LRRC3B 3'UTR 0.07 TCGA-L5-A8NQ-01 3 33840163 33840163 C T PDCD6IP 5'UTR 0.09 TCGA-L5-A8NQ-01 3 35770799 35770799 C T ARPP21 Silent p.S376S 0.13 TCGA-L5-A8NQ-01 3 49897669 49897669 C G CAMKV Missense_Mutation p.D293H 0.19 tolerated(0.47) probably_damaging(0.999) TCGA-L5-A8NQ-01 3 53212438 53212438 C T PRKCD 5'UTR 0.14 TCGA-L5-A8NQ-01 4 123128701 123128701 C G KIAA1109 Missense_Mutation p.L554V 0.06 benign(0.012) TCGA-L5-A8NQ-01 4 39450011 39450011 C G KLB Missense_Mutation p.S947C 0.12 deleterious(0) probably_damaging(0.967) TCGA-L5-A8NQ-01 4 4248035 4248035 G C TMEM128 Missense_Mutation p.L21V 0.10 deleterious(0.03) possibly_damaging(0.496) TCGA-L5-A8NQ-01 4 76465090 76465090 G C THAP6 Missense_Mutation p.E146Q 0.12 tolerated_low_confidence(0.05) unknown(0) TCGA-L5-A8NQ-01 5 102353101 102353101 C G PAM Missense_Mutation p.H799D 0.08 tolerated(0.72) probably_damaging(0.955) TCGA-L5-A8NQ-01 5 140725576 140725576 C T PCDHGA3 Missense_Mutation p.T659M 0.11 deleterious_low_confidence(0.01) probably_damaging(0.978) TCGA-L5-A8NQ-01 5 143586748 143586748 C G KCTD16 Silent p.L157L 0.09 TCGA-L5-A8NQ-01 5 14391097 14391097 G A TRIO Missense_Mutation p.D1406N 0.10 probably_damaging(0.995) TCGA-L5-A8NQ-01 5 147204189 147204189 C T SPINK1 3'UTR 0.12 TCGA-L5-A8NQ-01 5 148732528 148732528 A G GRPEL2 3'UTR 0.19 TCGA-L5-A8NQ-01 5 149206271 149206271 C T PPARGC1B Silent p.L96L 0.07 TCGA-L5-A8NQ-01 5 153677529 153677529 C T GALNT10 Silent p.P97P 0.14 TCGA-L5-A8NQ-01 5 158603819 158603819 G T RNF145 Missense_Mutation p.L178M 0.18 deleterious(0.01) probably_damaging(0.992) TCGA-L5-A8NQ-01 5 159776454 159776454 C T C1QTNF2 Silent p.G238G 0.10 TCGA-L5-A8NQ-01 5 172513533 172513533 C T CREBRF Silent p.F13F 0.21 TCGA-L5-A8NQ-01 5 179226605 179226605 C G MGAT4B Silent p.L329L 0.13 TCGA-L5-A8NQ-01 5 39202037 39202037 C T FYB Silent p.P352P 0.05 TCGA-L5-A8NQ-01 5 40771927 40771927 G A PRKAA1 Silent p.I149I 0.07 TCGA-L5-A8NQ-01 5 41310851 41310851 C T PLCXD3 3'UTR 0.16 TCGA-L5-A8NQ-01 5 95018270 95018270 C G SPATA9 Missense_Mutation p.E38Q 0.08 deleterious(0.01) possibly_damaging(0.714) TCGA-L5-A8NQ-01 6 100841766 100841766 C G SIM1 Splice_Site p.X390_splice 0.41 TCGA-L5-A8NQ-01 6 10877413 10877413 C T GCM2 Silent p.L101L 0.11 TCGA-L5-A8NQ-01 6 111695431 111695431 G A REV3L Missense_Mutation p.S1376F 0.07 tolerated_low_confidence(0.06) benign(0.235) TCGA-L5-A8NQ-01 6 111696179 111696179 G A REV3L Missense_Mutation p.R1127C 0.09 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 6 117249991 117249991 C T RFX6 Missense_Mutation p.S823F 0.11 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-L5-A8NQ-01 6 118881046 118881046 G A PLN 3'UTR 0.22 TCGA-L5-A8NQ-01 6 138413309 138413309 C T PERP Nonsense_Mutation p.W151* 0.11 TCGA-L5-A8NQ-01 6 1390656 1390656 C T FOXF2 Silent p.F158F 0.15 TCGA-L5-A8NQ-01 6 152831447 152831447 G A SYNE1 Silent p.S154S 0.19 TCGA-L5-A8NQ-01 6 165703509 165703509 C T C6orf118 Missense_Mutation p.E390K 0.14 deleterious(0) probably_damaging(0.967) TCGA-L5-A8NQ-01 6 165752833 165752833 C A PDE10A Missense_Mutation p.K704N 0.13 deleterious(0) possibly_damaging(0.904) TCGA-L5-A8NQ-01 6 166578287 166578287 C T T Splice_Site p.X223_splice 0.07 TCGA-L5-A8NQ-01 6 25916027 25916027 C T SLC17A2 Missense_Mutation p.D334N 0.14 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NQ-01 6 26123991 26123991 G C HIST1H2BC Missense_Mutation p.Q48E 0.04 deleterious_low_confidence(0) benign(0.314) TCGA-L5-A8NQ-01 6 27420279 27420279 C G ZNF184 Missense_Mutation p.Q353H 0.14 tolerated(0.05) probably_damaging(1) TCGA-L5-A8NQ-01 6 29645002 29645002 T C ZFP57 5'Flank 0.26 TCGA-L5-A8NQ-01 6 30038716 30038716 G A RNF39 3'UTR 0.06 TCGA-L5-A8NQ-01 6 31828301 31828301 G A NEU1 Missense_Mutation p.A238V 0.08 tolerated(0.29) benign(0.008) TCGA-L5-A8NQ-01 6 31922195 31922195 C T NELFE Missense_Mutation p.R256Q 0.19 tolerated(0.06) unknown(0) TCGA-L5-A8NQ-01 6 36168850 36168850 G A BRPF3 Missense_Mutation p.E251K 0.12 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NQ-01 6 36988338 36988338 G A FGD2 Missense_Mutation p.E382K 0.07 deleterious(0.05) probably_damaging(0.923) TCGA-L5-A8NQ-01 6 3722977 3722977 G A PXDC1 3'UTR 0.12 TCGA-L5-A8NQ-01 6 42224820 42224820 C G TRERF1 Missense_Mutation p.R786T 0.14 deleterious(0.01) possibly_damaging(0.537) TCGA-L5-A8NQ-01 6 43528002 43528002 G A XPO5 Silent p.L378L 0.21 TCGA-L5-A8NQ-01 6 46656919 46656919 G A TDRD6 Missense_Mutation p.E352K 0.13 deleterious(0) probably_damaging(0.987) TCGA-L5-A8NQ-01 6 52615231 52615231 G C GSTA2 3'UTR 0.14 TCGA-L5-A8NQ-01 6 56471743 56471743 C G DST Intron 0.08 TCGA-L5-A8NQ-01 6 87969973 87969973 C T ZNF292 Missense_Mutation p.A2209V 0.26 tolerated(0.06) benign(0.14) TCGA-L5-A8NQ-01 7 100277315 100277315 G C GIGYF1 3'UTR 0.10 TCGA-L5-A8NQ-01 7 100678697 100678697 G A MUC17 Missense_Mutation p.E1334K 0.07 unknown(0) TCGA-L5-A8NQ-01 7 100859262 100859262 C T PLOD3 Missense_Mutation p.R181H 0.14 tolerated(0.09) benign(0.002) TCGA-L5-A8NQ-01 7 102100206 102100206 C T ALKBH4 Missense_Mutation p.V56M 0.08 tolerated(0.12) benign(0.018) TCGA-L5-A8NQ-01 7 107615724 107615724 C T LAMB1 Missense_Mutation p.E442K 0.13 tolerated(0.22) benign(0.05) TCGA-L5-A8NQ-01 7 107616231 107616231 G A LAMB1 Silent p.D364D 0.10 TCGA-L5-A8NQ-01 7 122342265 122342265 C G RNF148 Silent p.G180G 0.11 TCGA-L5-A8NQ-01 7 129410292 129410292 G A MIR182 RNA 0.10 TCGA-L5-A8NQ-01 7 139416675 139416675 C G HIPK2 Missense_Mutation p.Q53H 0.06 tolerated(0.91) benign(0) TCGA-L5-A8NQ-01 7 149522965 149522965 C T SSPO RNA 0.17 TCGA-L5-A8NQ-01 7 17980060 17980060 C T SNX13 5'UTR 0.11 TCGA-L5-A8NQ-01 7 21603811 21603811 C G DNAH11 Silent p.L330L 0.10 TCGA-L5-A8NQ-01 7 42085103 42085103 C T GLI3 Missense_Mutation p.E236K 0.15 deleterious(0.01) possibly_damaging(0.701) TCGA-L5-A8NQ-01 7 45953307 45953307 C G IGFBP3 3'Flank 0.10 TCGA-L5-A8NQ-01 7 47408374 47408374 G C TNS3 Silent p.V623V 0.07 TCGA-L5-A8NQ-01 7 56022736 56022736 C T MRPS17 Silent p.F86F 0.11 TCGA-L5-A8NQ-01 7 64438943 64438943 C G ZNF117 Missense_Mutation p.E336Q 0.06 deleterious(0.02) probably_damaging(0.995) TCGA-L5-A8NQ-01 7 66103973 66103973 C T KCTD7 Silent p.N208N 0.11 TCGA-L5-A8NQ-01 7 73521432 73521432 G A LIMK1 Missense_Mutation p.R325H 0.07 deleterious(0.01) benign(0.201) TCGA-L5-A8NQ-01 7 77584257 77584257 G A PHTF2 3'UTR 0.10 TCGA-L5-A8NQ-01 7 93551468 93551468 G C GNG11 Missense_Mutation p.E7Q 0.09 tolerated(0.93) benign(0.205) TCGA-L5-A8NQ-01 7 99171528 99171528 A G ZNF655 3'UTR 0.09 TCGA-L5-A8NQ-01 7 99699026 99699026 G A MCM7 5'UTR 0.12 TCGA-L5-A8NQ-01 8 104898096 104898096 T C RIMS2 Silent p.S423S 0.32 TCGA-L5-A8NQ-01 8 145694651 145694651 C T KIFC2 Intron 0.22 TCGA-L5-A8NQ-01 8 15998556 15998556 T G MSR1 Intron 0.14 TCGA-L5-A8NQ-01 8 33356961 33356961 T G MAK16 3'UTR 0.36 TCGA-L5-A8NQ-01 8 42188469 42188469 A T IKBKB Missense_Mutation p.E748V 0.22 deleterious_low_confidence(0) benign(0.134) TCGA-L5-A8NQ-01 8 53535579 53535579 C T RB1CC1 3'UTR 0.30 TCGA-L5-A8NQ-01 8 63985593 63985593 G T TTPA Missense_Mutation p.L87I 0.29 deleterious(0.03) possibly_damaging(0.833) TCGA-L5-A8NQ-01 8 64124829 64124829 C G YTHDF3 3'UTR 0.25 TCGA-L5-A8NQ-01 8 67425869 67425869 G C C8orf46 Missense_Mutation p.R146T 0.31 tolerated(0.19) probably_damaging(0.985) TCGA-L5-A8NQ-01 8 8239172 8239172 G A SGK223 Missense_Mutation p.S29F 0.33 probably_damaging(0.991) TCGA-L5-A8NQ-01 8 87588200 87588200 A C CNGB3 Silent p.P754P 0.08 TCGA-L5-A8NQ-01 9 114510480 114510480 C T C9orf84 Splice_Site p.X224_splice 0.11 TCGA-L5-A8NQ-01 9 115812183 115812183 G C ZFP37 Intron 0.19 TCGA-L5-A8NQ-01 9 116085328 116085328 G A WDR31 Silent p.G144G 0.20 TCGA-L5-A8NQ-01 9 133274986 133274986 G A AL354898.1 5'UTR 0.11 TCGA-L5-A8NQ-01 9 17796339 17796339 G A SH3GL2 3'UTR 0.23 TCGA-L5-A8NQ-01 9 20986392 20986392 G A FOCAD Missense_Mutation p.E1612K 0.17 tolerated(0.26) benign(0.044) TCGA-L5-A8NQ-01 9 21441080 21441080 C G IFNA1 3'UTR 0.12 TCGA-L5-A8NQ-01 9 21837923 21837923 C G MTAP Missense_Mutation p.Q122E 0.12 tolerated(0.56) benign(0.193) TCGA-L5-A8NQ-01 9 84605340 84605340 G A SPATA31D1 Missense_Mutation p.D81N 0.08 tolerated(0.21) possibly_damaging(0.798) TCGA-L5-A8NQ-01 X 122799634 122799634 C G THOC2 Missense_Mutation p.K415N 0.26 tolerated(0.34) benign(0.003) TCGA-L5-A8NQ-01 X 14921098 14921098 G C MOSPD2 Silent p.V183V 0.14 TCGA-L5-A8NQ-01 X 149638836 149638836 C G MAMLD1 Missense_Mutation p.L306V 0.19 deleterious(0.01) possibly_damaging(0.858) TCGA-L5-A8NQ-01 X 151869922 151869922 C T MAGEA6 Silent p.I204I 0.16 TCGA-L5-A8NQ-01 X 153221703 153221703 G A HCFC1 Missense_Mutation p.S932L 0.23 tolerated_low_confidence(0.09) probably_damaging(0.974) TCGA-L5-A8NQ-01 X 15584415 15584415 G A ACE2 Missense_Mutation p.S692F 0.14 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-L5-A8NQ-01 X 20143927 20143927 G A EIF1AX 3'UTR 0.10 TCGA-L5-A8NQ-01 X 24579337 24579337 T - PCYT1B 3'Flank 0.15 TCGA-L5-A8NQ-01 X 39914677 39914677 G C BCOR Nonsense_Mutation p.S1562* 0.15 TCGA-L5-A8NQ-01 X 44107641 44107641 G T EFHC2 Missense_Mutation p.Q330K 0.43 tolerated(0.06) benign(0.206) TCGA-L5-A8NQ-01 X 47101642 47101642 C G USP11 Missense_Mutation p.I490M 0.09 tolerated(0.58) benign(0.042) TCGA-L5-A8NQ-01 X 55650499 55650499 G A FOXR2 Missense_Mutation p.G119R 0.23 tolerated(0.4) benign(0.001) TCGA-L5-A8NQ-01 X 96139347 96139347 C G RPA4 Missense_Mutation p.S13C 0.15 tolerated(0.13) possibly_damaging(0.506) TCGA-L5-A8NQ-01 X 99664132 99664132 C A PCDH19 5'UTR 0.20 TCGA-L5-A8NR-01 10 103530199 103530199 G A FGF8 Missense_Mutation p.P208S 0.31 deleterious(0.01) possibly_damaging(0.866) TCGA-L5-A8NR-01 10 103899593 103899594 AG - PPRC1 Frame_Shift_Del p.N444Pfs*74 0.35 TCGA-L5-A8NR-01 10 103906472 103906472 C T PPRC1 Silent p.P1241P 0.11 TCGA-L5-A8NR-01 10 104436491 104436491 C A ARL3 3'UTR 0.29 TCGA-L5-A8NR-01 10 105801273 105801273 G A COL17A1 Missense_Mutation p.P859S 0.24 possibly_damaging(0.487) TCGA-L5-A8NR-01 10 11363231 11363231 C A CELF2 Silent p.T392T 0.05 TCGA-L5-A8NR-01 10 114158683 114158683 C T ACSL5 Nonsense_Mutation p.Q117* 0.35 TCGA-L5-A8NR-01 10 12009383 12009386 TTAG - UPF2 Frame_Shift_Del p.T674Sfs*14 0.35 TCGA-L5-A8NR-01 10 126308321 126308321 C T FAM53B 3'UTR 0.28 TCGA-L5-A8NR-01 10 129907608 129907608 C T MKI67 Silent p.R832R 0.28 TCGA-L5-A8NR-01 10 131635895 131635895 C T EBF3 3'UTR 0.20 TCGA-L5-A8NR-01 10 13699024 13699024 G A FRMD4A Silent p.S855S 0.49 TCGA-L5-A8NR-01 10 15649741 15649741 C T ITGA8 Missense_Mutation p.V567I 0.29 tolerated(0.32) benign(0.001) TCGA-L5-A8NR-01 10 17194051 17194051 G T TRDMT1 Intron 0.41 TCGA-L5-A8NR-01 10 27702528 27702528 C T PTCHD3 Missense_Mutation p.D218N 0.41 tolerated(0.78) benign(0.01) TCGA-L5-A8NR-01 10 88768663 88768663 G A RP11-96C23.10 3'Flank 0.20 TCGA-L5-A8NR-01 10 95347043 95347043 G A FFAR4 Missense_Mutation p.V271M 0.24 deleterious(0) probably_damaging(0.99) TCGA-L5-A8NR-01 10 99969226 99969226 C A R3HCC1L Nonsense_Mutation p.S452* 0.15 TCGA-L5-A8NR-01 11 103124155 103124155 C A DYNC2H1 Missense_Mutation p.T3402K 0.31 probably_damaging(0.99) TCGA-L5-A8NR-01 11 113078610 113078610 G A NCAM1 Missense_Mutation p.D327N 0.31 tolerated(0.07) possibly_damaging(0.727) TCGA-L5-A8NR-01 11 115046874 115046874 C T CADM1 3'UTR 0.24 TCGA-L5-A8NR-01 11 117389188 117389188 G A DSCAML1 Silent p.N561N 0.62 TCGA-L5-A8NR-01 11 120925835 120925835 A C TBCEL Missense_Mutation p.K177T 0.54 deleterious(0.01) benign(0.173) TCGA-L5-A8NR-01 11 124856678 124856678 C T CCDC15 Missense_Mutation p.S265F 0.27 deleterious(0.05) benign(0.31) TCGA-L5-A8NR-01 11 125366549 125366549 C T AP000708.1 Missense_Mutation p.H145Y 0.29 deleterious_low_confidence(0) benign(0.291) TCGA-L5-A8NR-01 11 128843098 128843098 A C ARHGAP32 Silent p.S1087S 0.27 TCGA-L5-A8NR-01 11 128844307 128844307 G A ARHGAP32 Silent p.L915L 0.21 TCGA-L5-A8NR-01 11 25071622 25071622 A G LUZP2 Silent p.Q268Q 0.59 TCGA-L5-A8NR-01 11 31832465 31832465 C A PAX6 5'UTR 0.24 TCGA-L5-A8NR-01 11 372929 372929 C T B4GALNT4 Silent p.H142H 0.30 TCGA-L5-A8NR-01 11 4409631 4409631 C T TRIM21 Missense_Mutation p.G212R 0.19 deleterious(0.01) probably_damaging(0.992) TCGA-L5-A8NR-01 11 55541539 55541539 A C OR5D13 Missense_Mutation p.E209A 0.57 tolerated(0.07) possibly_damaging(0.58) TCGA-L5-A8NR-01 11 5625768 5625768 A C TRIM6 Missense_Mutation p.K171T 0.20 deleterious(0.02) possibly_damaging(0.652) TCGA-L5-A8NR-01 11 56258648 56258648 A G OR5M8 Missense_Mutation p.F67L 0.25 tolerated(0.06) benign(0.005) TCGA-L5-A8NR-01 11 58920829 58920829 C T FAM111A Missense_Mutation p.T563I 0.08 tolerated(0.14) benign(0.003) TCGA-L5-A8NR-01 11 68452434 68452434 G A GAL Missense_Mutation p.A15T 0.23 tolerated(0.15) benign(0.001) TCGA-L5-A8NR-01 11 8161436 8161436 A C RIC3 Intron 0.55 TCGA-L5-A8NR-01 11 89088130 89088130 T C NOX4 Missense_Mutation p.K406R 0.48 tolerated(0.14) benign(0.081) TCGA-L5-A8NR-01 12 111798732 111798732 C A FAM109A 3'UTR 0.33 TCGA-L5-A8NR-01 12 114792759 114792759 T G TBX5 3'UTR 0.23 TCGA-L5-A8NR-01 12 121139145 121139145 G T MLEC 3'UTR 0.31 TCGA-L5-A8NR-01 12 121947744 121947744 T C KDM2B Missense_Mutation p.K425E 0.43 tolerated(0.98) benign(0.001) TCGA-L5-A8NR-01 12 124401081 124401081 C T DNAH10 Silent p.R3482R 0.26 TCGA-L5-A8NR-01 12 130649261 130649261 C T FZD10 3'UTR 0.18 TCGA-L5-A8NR-01 12 23999102 23999102 G T SOX5 Missense_Mutation p.S99Y 0.21 deleterious(0) possibly_damaging(0.794) TCGA-L5-A8NR-01 12 40645037 40645037 A C LRRK2 Missense_Mutation p.E321A 0.39 tolerated(0.13) possibly_damaging(0.659) TCGA-L5-A8NR-01 12 4554486 4554486 C T FGF6 Missense_Mutation p.R84Q 0.28 deleterious(0) possibly_damaging(0.78) TCGA-L5-A8NR-01 12 48578103 48578103 C T C12orf68 Silent p.D66D 0.23 TCGA-L5-A8NR-01 12 51102285 51102285 G A DIP2B Silent p.A863A 0.23 TCGA-L5-A8NR-01 12 53346447 53346447 C A KRT18 Intron 0.44 TCGA-L5-A8NR-01 12 54576323 54576323 G A SMUG1 Nonsense_Mutation p.R124* 0.31 TCGA-L5-A8NR-01 12 55688364 55688364 C T OR6C6 Missense_Mutation p.C218Y 0.48 tolerated_low_confidence(1) benign(0.001) TCGA-L5-A8NR-01 12 58130970 58130970 T C AGAP2 Missense_Mutation p.K354E 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-L5-A8NR-01 12 6182795 6182795 G A VWF Silent p.C329C 0.26 TCGA-L5-A8NR-01 12 6428024 6428024 C T PLEKHG6 Silent p.C463C 0.09 TCGA-L5-A8NR-01 12 6965536 6965536 G A USP5 Nonsense_Mutation p.W169* 0.15 TCGA-L5-A8NR-01 12 88373981 88373981 A T C12orf50 3'UTR 0.26 TCGA-L5-A8NR-01 13 103299600 103299600 A G TPP2 Missense_Mutation p.E845G 0.44 tolerated(0.08) benign(0.015) TCGA-L5-A8NR-01 13 36048930 36048930 C T MAB21L1 3'UTR 0.42 TCGA-L5-A8NR-01 13 53422026 53422026 G A PCDH8 Silent p.R182R 0.60 TCGA-L5-A8NR-01 13 74265668 74265668 C T KLF12 3'UTR 0.23 TCGA-L5-A8NR-01 13 95830267 95830267 G A ABCC4 Missense_Mutation p.R542W 0.14 deleterious(0) possibly_damaging(0.825) TCGA-L5-A8NR-01 14 106437867 106437867 C T ADAM6 RNA 0.42 TCGA-L5-A8NR-01 14 106967495 106967495 T G IGHV1-46 5'UTR 0.16 TCGA-L5-A8NR-01 14 107113872 107113872 C T IGHV3-64 Missense_Mutation p.G75R 0.21 deleterious_low_confidence(0) benign(0.301) TCGA-L5-A8NR-01 14 20296368 20296368 G C OR4N2 Missense_Mutation p.G254A 0.06 tolerated(0.33) benign(0.002) TCGA-L5-A8NR-01 14 20296369 20296369 C T OR4N2 Silent p.G254G 0.06 TCGA-L5-A8NR-01 14 24037877 24037877 C G JPH4 3'UTR 0.48 TCGA-L5-A8NR-01 14 47120705 47120705 T G RPL10L Missense_Mutation p.S79R 0.50 tolerated(0.31) benign(0.055) TCGA-L5-A8NR-01 14 61550411 61550411 C T SLC38A6 Missense_Mutation p.S516F 0.08 unknown(0) TCGA-L5-A8NR-01 14 80669483 80669483 A G DIO2 Missense_Mutation p.L160P 0.56 deleterious(0) probably_damaging(1) TCGA-L5-A8NR-01 14 86090122 86090122 A C FLRT2 3'UTR 0.53 TCGA-L5-A8NR-01 14 86091185 86091185 A C FLRT2 3'UTR 0.58 TCGA-L5-A8NR-01 15 23441160 23441160 C T AC100757.1 5'Flank 0.14 TCGA-L5-A8NR-01 15 41062662 41062662 T A C15orf62 5'UTR 0.28 TCGA-L5-A8NR-01 15 44854306 44854306 G A EIF3J 3'UTR 0.26 TCGA-L5-A8NR-01 15 73889549 73889549 G A NPTN Missense_Mutation p.R85C 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NR-01 15 77406452 77406452 A G PEAK1 3'UTR 0.40 TCGA-L5-A8NR-01 15 77906450 77906450 C T LINGO1 Missense_Mutation p.R600Q 0.12 deleterious(0) probably_damaging(0.942) TCGA-L5-A8NR-01 15 78758680 78758680 A G IREB2 Missense_Mutation p.K160E 0.18 tolerated(0.3) benign(0.031) TCGA-L5-A8NR-01 15 79382679 79382679 G A RASGRF1 Silent p.F54F 0.07 TCGA-L5-A8NR-01 15 80843542 80843542 A G ARNT2 Missense_Mutation p.M294V 0.26 tolerated(1) benign(0.001) TCGA-L5-A8NR-01 15 89395210 89395210 A G ACAN Missense_Mutation p.N738D 0.17 deleterious(0) unknown(0) TCGA-L5-A8NR-01 15 89422387 89422387 G A HAPLN3 Missense_Mutation p.R203W 0.29 deleterious(0) probably_damaging(0.93) TCGA-L5-A8NR-01 15 99672368 99672368 G A SYNM Missense_Mutation p.G1267D 0.13 tolerated(0.27) benign(0.013) TCGA-L5-A8NR-01 15 99696309 99696309 G A TTC23 Intron 0.60 TCGA-L5-A8NR-01 16 1723954 1723954 G T CRAMP1L Missense_Mutation p.A1240S 0.24 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NR-01 16 19127511 19127511 G T ITPRIPL2 3'UTR 0.56 TCGA-L5-A8NR-01 16 19721832 19721832 G A KNOP1 Missense_Mutation p.T355M 0.46 tolerated(0.11) benign(0.087) TCGA-L5-A8NR-01 16 27752022 27752022 G A KIAA0556 Missense_Mutation p.E802K 0.27 tolerated(0.65) benign(0.021) TCGA-L5-A8NR-01 16 30581395 30581395 C T ZNF688 Missense_Mutation p.A225T 0.49 tolerated(0.22) benign(0.132) TCGA-L5-A8NR-01 16 33020871 33020871 C G IGHV3OR16-8 Missense_Mutation p.N93K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.792) TCGA-L5-A8NR-01 16 5057472 5057472 C T SEC14L5 Silent p.R519R 0.38 TCGA-L5-A8NR-01 16 633346 633346 C T PIGQ Silent p.P665P 0.17 TCGA-L5-A8NR-01 16 65005844 65005844 A G CDH11 Missense_Mutation p.L505P 0.64 tolerated(0.06) possibly_damaging(0.766) TCGA-L5-A8NR-01 16 67404883 67404883 C T LRRC36 Missense_Mutation p.A411V 0.28 deleterious_low_confidence(0.05) benign(0.025) TCGA-L5-A8NR-01 16 7762402 7762402 A - RBFOX1 3'UTR 0.30 TCGA-L5-A8NR-01 16 88809962 88809962 C T PIEZO1 Intron 0.59 TCGA-L5-A8NR-01 17 10212569 10212569 C T MYH13 Silent p.V1717V 0.18 TCGA-L5-A8NR-01 17 11520811 11520811 G A DNAH9 Missense_Mutation p.E330K 0.38 benign(0.005) TCGA-L5-A8NR-01 17 11684469 11684469 C T DNAH9 Nonsense_Mutation p.Q2566* 0.22 TCGA-L5-A8NR-01 17 11837260 11837260 G A DNAH9 Missense_Mutation p.D4121N 0.28 benign(0.169) TCGA-L5-A8NR-01 17 16667308 16667308 C T CCDC144A Missense_Mutation p.T1306M 0.32 deleterious(0) possibly_damaging(0.472) TCGA-L5-A8NR-01 17 2604723 2604732 ACAAACAGGT - CLUH Frame_Shift_Del p.Y238* 0.23 TCGA-L5-A8NR-01 17 27287688 27287688 G T SEZ6 Missense_Mutation p.L471I 0.37 deleterious(0.01) probably_damaging(0.944) TCGA-L5-A8NR-01 17 37564479 37564479 C T MED1 Missense_Mutation p.S1332N 0.15 tolerated_low_confidence(0.21) unknown(0) TCGA-L5-A8NR-01 17 39622043 39622043 G C KRT32 Silent p.L230L 0.07 TCGA-L5-A8NR-01 17 58026841 58026841 T C RPS6KB1 3'UTR 0.44 TCGA-L5-A8NR-01 17 6023844 6023844 C T WSCD1 Missense_Mutation p.R531C 0.30 deleterious(0) possibly_damaging(0.67) TCGA-L5-A8NR-01 18 22806601 22806601 A G ZNF521 Silent p.T427T 0.30 TCGA-L5-A8NR-01 18 44219680 44219680 C T LOXHD1 Missense_Mutation p.R137H 0.38 deleterious(0.04) benign(0.212) TCGA-L5-A8NR-01 18 50985741 50985741 T G DCC Missense_Mutation p.S1178A 0.71 deleterious(0.01) possibly_damaging(0.657) TCGA-L5-A8NR-01 18 6882174 6882174 T C ARHGAP28 Silent p.D284D 0.52 TCGA-L5-A8NR-01 19 10124206 10124206 C T RDH8 Silent p.S31S 0.76 TCGA-L5-A8NR-01 19 10818000 10818000 G A QTRT1 Silent p.L158L 0.21 TCGA-L5-A8NR-01 19 12429259 12429259 T A ZNF563 3'UTR 0.12 TCGA-L5-A8NR-01 19 15918274 15918274 C A OR10H1 Missense_Mutation p.D192Y 0.76 deleterious(0.04) benign(0.307) TCGA-L5-A8NR-01 19 16528891 16528891 C T EPS15L1 Silent p.T325T 0.26 TCGA-L5-A8NR-01 19 19369505 19369505 C T HAPLN4 Missense_Mutation p.R215H 0.30 tolerated(0.11) possibly_damaging(0.63) TCGA-L5-A8NR-01 19 21990944 21990944 T G ZNF43 Missense_Mutation p.N632T 0.30 tolerated(0.41) benign(0.271) TCGA-L5-A8NR-01 19 29213619 29213619 A C AC005307.3 RNA 0.38 TCGA-L5-A8NR-01 19 36246507 36246507 C T HSPB6 Silent p.T133T 0.69 TCGA-L5-A8NR-01 19 36641018 36641018 C T CAPNS1 3'UTR 0.32 TCGA-L5-A8NR-01 19 37130420 37130420 T G ZNF461 Missense_Mutation p.N276T 0.37 tolerated(0.06) benign(0.085) TCGA-L5-A8NR-01 19 40368423 40368423 G C FCGBP Missense_Mutation p.L4309V 0.33 probably_damaging(0.99) TCGA-L5-A8NR-01 19 4268737 4268737 C T CCDC94 3'UTR 0.35 TCGA-L5-A8NR-01 19 50764761 50764761 C T MYH14 Silent p.L818L 0.25 TCGA-L5-A8NR-01 19 51656566 51656566 T C SIGLEC7 3'UTR 0.27 TCGA-L5-A8NR-01 19 53741699 53741699 A C ZNF677 Missense_Mutation p.F94C 0.40 tolerated(0.06) possibly_damaging(0.75) TCGA-L5-A8NR-01 19 55349035 55349035 C A KIR2DS4 Silent p.V25V 0.44 TCGA-L5-A8NR-01 19 55966410 55966410 G A ISOC2 Silent p.S177S 0.38 TCGA-L5-A8NR-01 19 56132107 56132107 G C ZNF865 3'Flank 0.40 TCGA-L5-A8NR-01 19 56273434 56273434 A C RFPL4A Silent p.R90R 0.14 TCGA-L5-A8NR-01 19 57065438 57065438 T C ZFP28 Silent p.T428T 0.33 TCGA-L5-A8NR-01 19 58640829 58640829 T G ZNF329 Missense_Mutation p.E14D 0.30 tolerated(0.09) benign(0.027) TCGA-L5-A8NR-01 19 58867516 58867516 C T ZNF497 Missense_Mutation p.A496T 0.40 tolerated_low_confidence(0.44) benign(0) TCGA-L5-A8NR-01 19 9073258 9073258 C T MUC16 Missense_Mutation p.D4730N 0.29 unknown(0) TCGA-L5-A8NR-01 19 9077073 9077073 G A MUC16 Missense_Mutation p.T3458I 0.67 unknown(0) TCGA-L5-A8NR-01 1 103345334 103345334 T G COL11A1 Missense_Mutation p.S1727R 0.36 unknown(0) TCGA-L5-A8NR-01 1 110038827 110038827 G A CYB561D1 Silent p.V234V 0.26 TCGA-L5-A8NR-01 1 12942006 12942006 G C PRAMEF4 Missense_Mutation p.L182V 0.57 deleterious(0.03) benign(0.138) TCGA-L5-A8NR-01 1 142803429 142803429 A C RP11-423O2.5 RNA 0.08 TCGA-L5-A8NR-01 1 145273434 145273434 C G NOTCH2NL Silent p.V96V 0.08 TCGA-L5-A8NR-01 1 149915980 149915980 G A OTUD7B Nonsense_Mutation p.R770* 0.37 TCGA-L5-A8NR-01 1 151665465 151665465 T C SNX27 Missense_Mutation p.Y490H 0.18 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NR-01 1 152084429 152084429 C T TCHH Missense_Mutation p.E422K 0.18 unknown(0) TCGA-L5-A8NR-01 1 153317650 153317650 G A PGLYRP4 Silent p.A116A 0.23 TCGA-L5-A8NR-01 1 156031064 156031064 C T RAB25 5'UTR 0.36 TCGA-L5-A8NR-01 1 157559110 157559110 C A FCRL4 Missense_Mutation p.G64V 0.20 tolerated(0.24) benign(0.024) TCGA-L5-A8NR-01 1 158299308 158299308 C T CD1B Silent p.Q246Q 0.26 TCGA-L5-A8NR-01 1 177250517 177250517 A G BRINP2 Silent p.K735K 0.47 TCGA-L5-A8NR-01 1 201618308 201618308 C T NAV1 Missense_Mutation p.P171L 0.56 deleterious(0) possibly_damaging(0.822) TCGA-L5-A8NR-01 1 206972299 206972299 G A IL19 Silent p.V20V 0.50 TCGA-L5-A8NR-01 1 214638199 214638199 G T PTPN14 5'UTR 0.22 TCGA-L5-A8NR-01 1 216677697 216677697 T C ESRRG 3'UTR 0.35 TCGA-L5-A8NR-01 1 228468108 228468108 C T OBSCN Missense_Mutation p.S3060F 0.17 probably_damaging(0.999) TCGA-L5-A8NR-01 1 228509131 228509131 C A OBSCN Missense_Mutation p.S5820R 0.37 benign(0.041) TCGA-L5-A8NR-01 1 230820927 230820927 G A COG2 Missense_Mutation p.R442H 0.42 deleterious(0.01) benign(0.074) TCGA-L5-A8NR-01 1 231335944 231335944 C T TRIM67 Silent p.T438T 0.16 TCGA-L5-A8NR-01 1 236917335 236917335 C A ACTN2 Missense_Mutation p.A643D 0.51 deleterious(0) probably_damaging(0.916) TCGA-L5-A8NR-01 1 47078811 47078811 G A MOB3C Silent p.A113A 0.25 TCGA-L5-A8NR-01 1 54520115 54520115 G A TCEANC2 Missense_Mutation p.R7Q 0.23 deleterious(0.01) probably_damaging(0.976) TCGA-L5-A8NR-01 1 75627000 75627000 A G LHX8 3'UTR 0.51 TCGA-L5-A8NR-01 1 82372903 82372903 T G LPHN2 Missense_Mutation p.I92S 0.17 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NR-01 1 86048536 86048536 C T CYR61 Silent p.D319D 0.25 TCGA-L5-A8NR-01 1 86965806 86965806 A G CLCA1 3'UTR 0.56 TCGA-L5-A8NR-01 1 94495022 94495022 G A ABCA4 Silent p.A1506A 0.29 TCGA-L5-A8NR-01 1 99771527 99771527 C T LPPR4 Missense_Mutation p.P418L 0.20 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NR-01 20 25260915 25260915 C T PYGB Missense_Mutation p.T369M 0.16 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NR-01 20 30414661 30414661 G C MYLK2 Missense_Mutation p.D382H 0.27 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NR-01 20 30605787 30605787 G A CCM2L Silent p.L96L 0.22 TCGA-L5-A8NR-01 20 32661373 32661373 C T RALY Silent p.I87I 0.35 TCGA-L5-A8NR-01 20 32661664 32661664 C G RALY Missense_Mutation p.F123L 0.17 tolerated(0.07) benign(0.011) TCGA-L5-A8NR-01 20 32663702 32663702 C G RALY Missense_Mutation p.L134V 0.24 tolerated(1) benign(0.058) TCGA-L5-A8NR-01 20 50245527 50245527 C A ATP9A Nonsense_Mutation p.E585* 0.31 TCGA-L5-A8NR-01 20 54573487 54573487 T G CBLN4 3'UTR 0.33 TCGA-L5-A8NR-01 20 55204645 55204645 C T TFAP2C Silent p.C15C 0.17 TCGA-L5-A8NR-01 20 57480483 57480483 C T GNAS Missense_Mutation p.R803C 0.35 deleterious(0.01) benign(0.287) TCGA-L5-A8NR-01 20 60348099 60348099 C T CDH4 Missense_Mutation p.P146L 0.38 tolerated(0.39) benign(0) TCGA-L5-A8NR-01 20 62701953 62701953 G A TCEA2 Missense_Mutation p.G262S 0.65 tolerated(0.22) benign(0.046) TCGA-L5-A8NR-01 21 10916467 10916468 AT - TPTE Frame_Shift_Del p.Y393Cfs*37 0.12 TCGA-L5-A8NR-01 21 19775826 19775826 T C TMPRSS15 Silent p.V38V 0.39 TCGA-L5-A8NR-01 21 31863953 31863953 T C KRTAP19-3 3'UTR 0.35 TCGA-L5-A8NR-01 21 33043955 33043958 CTCT - SCAF4 Frame_Shift_Del p.R1066Sfs*17 0.37 TCGA-L5-A8NR-01 21 34132172 34132173 - T PAXBP1 Frame_Shift_Ins p.T370Nfs*3 0.24 TCGA-L5-A8NR-01 21 43938512 43938512 T G SLC37A1 5'UTR 0.30 TCGA-L5-A8NR-01 22 24107912 24107912 C T C22orf15 Missense_Mutation p.P147L 0.17 deleterious_low_confidence(0) benign(0.033) TCGA-L5-A8NR-01 22 26892716 26892716 G A TFIP11 Nonsense_Mutation p.Q526* 0.39 TCGA-L5-A8NR-01 22 35802675 35802675 C T MCM5 Missense_Mutation p.R185C 0.29 deleterious(0.03) possibly_damaging(0.776) TCGA-L5-A8NR-01 2 116601842 116601842 T G DPP10 3'Flank 0.58 TCGA-L5-A8NR-01 2 118588353 118588353 T C DDX18 3'UTR 0.35 TCGA-L5-A8NR-01 2 125405341 125405341 A G CNTNAP5 Missense_Mutation p.K627R 0.45 tolerated(0.15) benign(0.371) TCGA-L5-A8NR-01 2 131487111 131487111 C A GPR148 Missense_Mutation p.F129L 0.27 tolerated(0.08) benign(0.123) TCGA-L5-A8NR-01 2 133489333 133489333 C T NCKAP5 Missense_Mutation p.R1807H 0.21 tolerated(0.27) benign(0.007) TCGA-L5-A8NR-01 2 133540076 133540076 A G NCKAP5 Silent p.T1436T 0.31 TCGA-L5-A8NR-01 2 138208594 138208594 G T THSD7B Splice_Site p.X1046_splice 0.28 TCGA-L5-A8NR-01 2 138400127 138400127 T G THSD7B Missense_Mutation p.L1293R 0.27 deleterious(0) unknown(0) TCGA-L5-A8NR-01 2 1652938 1652938 C T PXDN Missense_Mutation p.G872R 0.30 tolerated(0.13) benign(0.022) TCGA-L5-A8NR-01 2 170027070 170027070 G A LRP2 Missense_Mutation p.R3791W 0.21 probably_damaging(0.988) TCGA-L5-A8NR-01 2 172641886 172641886 C T SLC25A12 Silent p.T645T 0.54 TCGA-L5-A8NR-01 2 179466867 179466867 T G TTN Missense_Mutation p.E18377D 0.37 TCGA-L5-A8NR-01 2 182322980 182322980 C T ITGA4 Silent p.P85P 0.24 TCGA-L5-A8NR-01 2 183699583 183699583 C T FRZB Missense_Mutation p.R324H 0.15 tolerated_low_confidence(0.39) benign(0.001) TCGA-L5-A8NR-01 2 197199178 197199178 G - HECW2 Frame_Shift_Del p.C156Afs*4 0.19 TCGA-L5-A8NR-01 2 21226114 21226114 T G APOB Missense_Mutation p.E4060D 0.54 benign(0.005) TCGA-L5-A8NR-01 2 21232182 21232182 G A APOB Nonsense_Mutation p.R2520* 0.28 TCGA-L5-A8NR-01 2 220074741 220074741 C T ABCB6 Silent p.G816G 0.27 TCGA-L5-A8NR-01 2 242811962 242811962 C T CXXC11 Silent p.A18A 0.27 TCGA-L5-A8NR-01 2 31490325 31490325 T G EHD3 3'UTR 0.74 TCGA-L5-A8NR-01 2 5840072 5840072 A C SOX11 3'UTR 0.26 TCGA-L5-A8NR-01 2 63273375 63273375 G C EHBP1 3'UTR 0.49 TCGA-L5-A8NR-01 2 69045074 69045074 T A ARHGAP25 Silent p.I317I 0.45 TCGA-L5-A8NR-01 2 71017637 71017637 C T FIGLA Missense_Mutation p.R45Q 0.56 deleterious(0.01) probably_damaging(0.943) TCGA-L5-A8NR-01 2 71043374 71043374 T C CLEC4F Missense_Mutation p.N380S 0.20 tolerated(0.37) benign(0.064) TCGA-L5-A8NR-01 2 74733105 74733105 C T PCGF1 Silent p.Q168Q 0.27 TCGA-L5-A8NR-01 2 9546844 9546844 C T ITGB1BP1 3'UTR 0.32 TCGA-L5-A8NR-01 2 96781560 96781560 C T ADRA2B Missense_Mutation p.R110H 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NR-01 3 113440401 113440401 A C NAA50 3'UTR 0.21 TCGA-L5-A8NR-01 3 122288127 122288127 A G DTX3L Silent p.S397S 0.31 TCGA-L5-A8NR-01 3 138121711 138121712 AG - MRAS 3'UTR 0.11 TCGA-L5-A8NR-01 3 155637040 155637040 C G GMPS Missense_Mutation p.L411V 0.16 deleterious(0) possibly_damaging(0.849) TCGA-L5-A8NR-01 3 170078555 170078555 C A SKIL Missense_Mutation p.Q146K 0.16 deleterious(0.04) probably_damaging(0.965) TCGA-L5-A8NR-01 3 173322247 173322247 C T NLGN1 5'UTR 0.15 TCGA-L5-A8NR-01 3 179518689 179518689 T G PEX5L 3'UTR 0.40 TCGA-L5-A8NR-01 3 195477760 195477760 G A MUC4 Silent p.L5291L 0.27 TCGA-L5-A8NR-01 3 196158295 196158295 G T UBXN7 Intron 0.14 TCGA-L5-A8NR-01 3 27335089 27335089 G C NEK10 Missense_Mutation p.L455V 0.71 tolerated(0.09) possibly_damaging(0.603) TCGA-L5-A8NR-01 3 28566105 28566105 T G ZCWPW2 Missense_Mutation p.L333V 0.79 deleterious(0.01) possibly_damaging(0.757) TCGA-L5-A8NR-01 3 30713853 30713853 G T TGFBR2 Missense_Mutation p.C418F 0.59 deleterious(0) probably_damaging(0.994) TCGA-L5-A8NR-01 3 49755961 49755961 G A AMIGO3 Missense_Mutation p.S313L 0.77 deleterious(0.03) benign(0.363) TCGA-L5-A8NR-01 3 52824813 52824813 C T ITIH1 Silent p.D790D 0.57 TCGA-L5-A8NR-01 3 53916154 53916154 C T ACTR8 5'UTR 0.79 TCGA-L5-A8NR-01 4 121958330 121958330 G A NDNF Missense_Mutation p.R266C 0.26 tolerated(0.18) possibly_damaging(0.8) TCGA-L5-A8NR-01 4 126238058 126238058 C T FAT4 Silent p.I164I 0.32 TCGA-L5-A8NR-01 4 126412644 126412644 G T FAT4 Missense_Mutation p.K4889N 0.19 possibly_damaging(0.529) TCGA-L5-A8NR-01 4 13604828 13604828 A G BOD1L1 Silent p.N1232N 0.44 TCGA-L5-A8NR-01 4 153549557 153549557 G A TMEM154 3'UTR 0.06 TCGA-L5-A8NR-01 4 157688963 157688963 G T PDGFC Missense_Mutation p.Q295K 0.64 tolerated(0.47) benign(0.42) TCGA-L5-A8NR-01 4 159133894 159133894 T G TMEM144 Missense_Mutation p.N25K 0.20 deleterious(0) probably_damaging(0.944) TCGA-L5-A8NR-01 4 175649711 175649711 C A GLRA3 Nonsense_Mutation p.E136* 0.29 TCGA-L5-A8NR-01 4 183268007 183268007 T C TENM3 Missense_Mutation p.C146R 0.26 tolerated_low_confidence(0.06) possibly_damaging(0.712) TCGA-L5-A8NR-01 4 41957535 41957535 C G TMEM33 3'UTR 0.14 TCGA-L5-A8NR-01 4 82010744 82010744 T C PRKG2 3'UTR 0.25 TCGA-L5-A8NR-01 4 85591608 85591608 C G WDFY3 3'UTR 0.14 TCGA-L5-A8NR-01 4 87622936 87622936 G T PTPN13 Nonsense_Mutation p.E393* 0.28 TCGA-L5-A8NR-01 4 87694054 87694054 A T PTPN13 Missense_Mutation p.Q1769H 0.30 tolerated(0.22) possibly_damaging(0.482) TCGA-L5-A8NR-01 5 112769190 112769190 G A TSSK1B 3'UTR 0.26 TCGA-L5-A8NR-01 5 11364974 11364974 C T CTNND2 Silent p.Q402Q 0.22 TCGA-L5-A8NR-01 5 122506648 122506648 G A PRDM6 Missense_Mutation p.V448M 0.54 tolerated(0.06) possibly_damaging(0.613) TCGA-L5-A8NR-01 5 132051477 132051477 T C KIF3A Missense_Mutation p.I367M 0.38 deleterious(0) probably_damaging(0.921) TCGA-L5-A8NR-01 5 137804167 137804167 C T EGR1 3'UTR 0.29 TCGA-L5-A8NR-01 5 140572033 140572033 G A PCDHB10 5'UTR 0.35 TCGA-L5-A8NR-01 5 140590328 140590328 G A PCDHB12 Missense_Mutation p.V617M 0.26 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-L5-A8NR-01 5 140590694 140590694 G A PCDHB12 Missense_Mutation p.V739M 0.29 deleterious_low_confidence(0.02) benign(0.149) TCGA-L5-A8NR-01 5 146795411 146795411 C T DPYSL3 Silent p.E227E 0.10 TCGA-L5-A8NR-01 5 149012616 149012616 G T ARHGEF37 3'UTR 0.14 TCGA-L5-A8NR-01 5 153857174 153857185 TTGGAGAGCTTG - HAND1 In_Frame_Del p.K129_K132del 0.17 TCGA-L5-A8NR-01 5 157052742 157052742 A - SOX30 3'UTR 0.37 TCGA-L5-A8NR-01 5 161325496 161325496 A C GABRA1 3'UTR 0.42 TCGA-L5-A8NR-01 5 172659978 172659978 C T NKX2-5 Missense_Mutation p.R190H 0.26 deleterious(0) possibly_damaging(0.889) TCGA-L5-A8NR-01 5 178540976 178540976 T C ADAMTS2 Silent p.P1176P 0.31 TCGA-L5-A8NR-01 5 179157003 179157003 T A CANX 3'UTR 0.42 TCGA-L5-A8NR-01 5 179225977 179225977 C T MGAT4B Missense_Mutation p.A447T 0.42 deleterious(0.03) benign(0.372) TCGA-L5-A8NR-01 5 31410883 31410883 G A DROSHA Missense_Mutation p.R1213C 0.08 deleterious(0) probably_damaging(0.964) TCGA-L5-A8NR-01 5 32789565 32789565 T G AC026703.1 Missense_Mutation p.L20V 0.26 benign(0) TCGA-L5-A8NR-01 5 33576644 33576644 T C ADAMTS12 Missense_Mutation p.R1163G 0.17 tolerated(0.35) benign(0) TCGA-L5-A8NR-01 5 55164734 55164734 T G IL31RA Silent p.T90T 0.41 TCGA-L5-A8NR-01 5 7900207 7900207 G A MTRR 3'UTR 0.29 TCGA-L5-A8NR-01 5 79439489 79439489 C T SERINC5 Silent p.V461V 0.17 TCGA-L5-A8NR-01 5 98233975 98233975 A G CHD1 Silent p.P450P 0.21 TCGA-L5-A8NR-01 6 117240321 117240321 T G RFX6 Missense_Mutation p.N348K 0.50 tolerated(0.46) benign(0.15) TCGA-L5-A8NR-01 6 130762277 130762277 A C TMEM200A Missense_Mutation p.K237T 0.14 tolerated(0.36) benign(0.015) TCGA-L5-A8NR-01 6 158919735 158919735 G A TULP4 Silent p.P635P 0.08 TCGA-L5-A8NR-01 6 20492009 20492009 G A E2F3 3'UTR 0.17 TCGA-L5-A8NR-01 6 29795963 29795963 G A HLA-G Silent p.P71P 0.26 TCGA-L5-A8NR-01 6 31856023 31856023 G A EHMT2 Missense_Mutation p.R514C 0.24 deleterious(0.02) possibly_damaging(0.537) TCGA-L5-A8NR-01 6 42200463 42200463 G A TRERF1 Silent p.G1078G 0.38 TCGA-L5-A8NR-01 6 64431646 64431646 A G EYS Missense_Mutation p.Y2761H 0.06 deleterious(0.03) probably_damaging(0.991) TCGA-L5-A8NR-01 6 65300859 65300859 T C EYS Missense_Mutation p.K1634R 0.21 tolerated_low_confidence(0.37) benign(0.007) TCGA-L5-A8NR-01 6 73111014 73111014 A C RIMS1 3'Flank 0.60 TCGA-L5-A8NR-01 6 74530287 74530287 A C CD109 Silent p.R1388R 0.42 TCGA-L5-A8NR-01 6 90440524 90440524 C A MDN1 Missense_Mutation p.K1687N 0.21 benign(0.075) TCGA-L5-A8NR-01 6 93951568 93951568 A C EPHA7 3'UTR 0.25 TCGA-L5-A8NR-01 6 99968887 99968887 G C TSTD3 RNA 0.21 TCGA-L5-A8NR-01 7 100459099 100459099 G A SLC12A9 Missense_Mutation p.A477T 0.68 deleterious(0.02) benign(0.34) TCGA-L5-A8NR-01 7 110303543 110303543 T C IMMP2L 3'UTR 0.10 TCGA-L5-A8NR-01 7 21582997 21582997 C T DNAH11 Missense_Mutation p.A45V 0.24 benign(0.004) TCGA-L5-A8NR-01 7 23349147 23349147 G A MALSU1 Silent p.E230E 0.16 TCGA-L5-A8NR-01 7 26412483 26412483 C A SNX10 3'UTR 0.27 TCGA-L5-A8NR-01 7 27134095 27134095 C G HOXA1 Silent p.G324G 0.16 TCGA-L5-A8NR-01 7 38389452 38389452 A T TRGV5 5'UTR 0.31 TCGA-L5-A8NR-01 7 42004019 42004019 G C GLI3 Missense_Mutation p.S1551C 0.24 deleterious(0) possibly_damaging(0.695) TCGA-L5-A8NR-01 7 47342698 47342698 G A TNS3 Missense_Mutation p.R1103W 0.26 deleterious(0) probably_damaging(1) TCGA-L5-A8NR-01 7 48685035 48685035 A - ABCA13 Frame_Shift_Del p.E5035Gfs*27 0.26 TCGA-L5-A8NR-01 7 4898306 4898306 G A PAPOLB 3'UTR 0.15 TCGA-L5-A8NR-01 7 62752611 62752611 G T ZNF733P RNA 0.16 TCGA-L5-A8NR-01 7 63808854 63808854 G A ZNF736 Missense_Mutation p.E205K 0.10 deleterious(0.04) benign(0.084) TCGA-L5-A8NR-01 7 69064801 69064801 C T AUTS2 Silent p.S54S 0.23 TCGA-L5-A8NR-01 7 70880968 70880968 G A WBSCR17 Missense_Mutation p.R228H 0.16 tolerated(0.09) possibly_damaging(0.807) TCGA-L5-A8NR-01 7 84666287 84666287 T C SEMA3D Missense_Mutation p.N370S 0.61 tolerated(0.26) probably_damaging(0.999) TCGA-L5-A8NR-01 7 86394587 86394587 G C GRM3 Silent p.G42G 0.09 TCGA-L5-A8NR-01 7 87150134 87150134 T G ABCB1 Missense_Mutation p.K915T 0.61 tolerated(0.38) benign(0.148) TCGA-L5-A8NR-01 7 98579527 98579527 C T TRRAP Missense_Mutation p.R2917C 0.32 probably_damaging(0.953) TCGA-L5-A8NR-01 8 101154374 101154374 C T FBXO43 Silent p.S36S 0.69 TCGA-L5-A8NR-01 8 101624292 101624292 C T SNX31 Missense_Mutation p.E183K 0.61 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NR-01 8 105405018 105405018 T C DPYS Silent p.R479R 0.21 TCGA-L5-A8NR-01 8 106815921 106815921 C A ZFPM2 3'UTR 0.15 TCGA-L5-A8NR-01 8 113235668 113235668 A G CSMD3 3'UTR 0.16 TCGA-L5-A8NR-01 8 116616855 116616855 G T TRPS1 Nonsense_Mutation p.Y447* 0.49 TCGA-L5-A8NR-01 8 121021267 121021267 G T DEPTOR Splice_Site p.X333_splice 0.44 TCGA-L5-A8NR-01 8 125987865 125987865 T C ZNF572 5'UTR 0.09 TCGA-L5-A8NR-01 8 131964145 131964145 G A ADCY8 Missense_Mutation p.R404W 0.47 deleterious(0) possibly_damaging(0.895) TCGA-L5-A8NR-01 8 13947440 13947440 T G SGCZ 3'UTR 0.47 TCGA-L5-A8NR-01 8 21549533 21549533 C T GFRA2 3'UTR 0.13 TCGA-L5-A8NR-01 8 24326334 24326334 G T ADAM7 Splice_Site p.X211_splice 0.66 TCGA-L5-A8NR-01 8 49831376 49831376 A G SNAI2 Missense_Mutation p.V266A 0.21 tolerated_low_confidence(0.92) benign(0.001) TCGA-L5-A8NR-01 8 88365874 88365874 A - CNBD1 Frame_Shift_Del p.K389Nfs*58 0.22 TCGA-L5-A8NR-01 8 97622574 97622574 A G SDC2 3'UTR 0.11 TCGA-L5-A8NR-01 9 107360878 107360878 A C OR13C5 Missense_Mutation p.L273V 0.51 tolerated(0.41) benign(0.032) TCGA-L5-A8NR-01 9 111665937 111665937 C T IKBKAP Silent p.A552A 0.43 TCGA-L5-A8NR-01 9 125865528 125865528 C T RABGAP1 3'UTR 0.28 TCGA-L5-A8NR-01 9 127975666 127975666 T G RABEPK Missense_Mutation p.L77V 0.25 tolerated(0.3) benign(0.119) TCGA-L5-A8NR-01 9 131403138 131403138 C T WDR34 Silent p.T89T 0.23 TCGA-L5-A8NR-01 9 131709154 131709154 G T DOLK Silent p.I143I 0.14 TCGA-L5-A8NR-01 9 135947058 135947058 C A CEL Silent p.P726P 0.41 TCGA-L5-A8NR-01 9 137989728 137989728 T G OLFM1 Intron 0.29 TCGA-L5-A8NR-01 9 138439069 138439069 G A OBP2A Silent p.T84T 0.26 TCGA-L5-A8NR-01 9 138585580 138585580 A C SOHLH1 Missense_Mutation p.F343V 0.22 deleterious(0.04) possibly_damaging(0.765) TCGA-L5-A8NR-01 9 139701045 139701045 A G CCDC183 Missense_Mutation p.Q400R 0.15 deleterious(0) possibly_damaging(0.809) TCGA-L5-A8NR-01 9 23691514 23691514 T - ELAVL2 3'UTR 0.19 TCGA-L5-A8NR-01 9 79117381 79117383 CTT - GCNT1 In_Frame_Del p.F29del 0.21 TCGA-L5-A8NR-01 9 84607806 84607806 T C SPATA31D1 Silent p.T807T 0.22 TCGA-L5-A8NR-01 9 90343605 90343605 G C CTSL Missense_Mutation p.D168H 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A8NR-01 9 91262482 91262482 A G RP13-60M5.2 RNA 0.23 TCGA-L5-A8NR-01 X 100809338 100809338 C T ARMCX1 3'UTR 0.11 TCGA-L5-A8NR-01 X 107840674 107840674 C A COL4A5 Missense_Mutation p.T552N 0.25 unknown(0) TCGA-L5-A8NR-01 X 111699772 111699772 T G ZCCHC16 3'UTR 0.76 TCGA-L5-A8NR-01 X 129822857 129822857 G A ENOX2 Missense_Mutation p.T107M 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-L5-A8NR-01 X 135432567 135432567 T G GPR112 Silent p.T2234T 0.71 TCGA-L5-A8NR-01 X 135439883 135439883 A G GPR112 Silent p.Q2316Q 0.62 TCGA-L5-A8NR-01 X 140714686 140714686 G T RP1-171K16.5 RNA 0.82 TCGA-L5-A8NR-01 X 144910545 144910545 G T TMEM257 3'UTR 0.67 TCGA-L5-A8NR-01 X 150868621 150868621 A G PRRG3 Missense_Mutation p.E54G 0.76 deleterious(0) possibly_damaging(0.697) TCGA-L5-A8NR-01 X 153069861 153069861 C T PDZD4 Silent p.A419A 0.52 TCGA-L5-A8NR-01 X 1755354 1755354 C T ASMT Missense_Mutation p.P271S 0.51 deleterious(0) probably_damaging(0.987) TCGA-L5-A8NR-01 X 18845548 18845548 C T PPEF1 Silent p.F635F 0.64 TCGA-L5-A8NR-01 X 30254478 30254478 A G MAGEB3 Missense_Mutation p.K146R 0.15 tolerated(0.29) benign(0.004) TCGA-L5-A8NR-01 X 30261530 30261530 A C MAGEB4 3'UTR 0.22 TCGA-L5-A8NR-01 X 38525451 38525451 A G TSPAN7 Missense_Mutation p.E53G 0.42 deleterious(0.02) possibly_damaging(0.493) TCGA-L5-A8NR-01 X 49643205 49643205 C T USP27X 5'Flank 0.60 TCGA-L5-A8NR-01 X 49957519 49957519 C T AKAP4 Silent p.E615E 0.12 TCGA-L5-A8NR-01 X 50031781 50031781 C T CCNB3 Missense_Mutation p.T33M 0.31 tolerated(0.25) benign(0.001) TCGA-L5-A8NR-01 X 54022145 54022145 C T PHF8 Missense_Mutation p.R471K 0.22 tolerated(1) benign(0) TCGA-L5-A8NR-01 X 55041349 55041349 A G ALAS2 Missense_Mutation p.L423P 0.31 deleterious(0) probably_damaging(1) TCGA-L5-A8NR-01 X 55514813 55514813 T C USP51 Missense_Mutation p.E187G 0.39 tolerated(0.17) benign(0.001) TCGA-L5-A8NR-01 X 55755727 55755727 T G RRAGB Missense_Mutation p.F104C 0.29 tolerated_low_confidence(0.19) benign(0.133) TCGA-L5-A8NR-01 X 56591387 56591387 G T UBQLN2 Missense_Mutation p.A361S 0.29 tolerated(0.85) benign(0.109) TCGA-L5-A8NR-01 X 79286534 79286534 A T TBX22 Missense_Mutation p.D496V 0.70 deleterious(0) possibly_damaging(0.851) TCGA-L5-A8NR-01 X 90690713 90690713 T G PABPC5 Missense_Mutation p.F46C 0.77 deleterious(0) probably_damaging(0.91) TCGA-L5-A8NS-01 10 102676648 102676648 G A FAM178A Missense_Mutation p.R169Q 0.19 tolerated(0.42) benign(0.01) TCGA-L5-A8NS-01 10 108459042 108459042 A T SORCS1 Missense_Mutation p.F448Y 0.13 tolerated(0.76) benign(0.329) TCGA-L5-A8NS-01 10 114849212 114849212 C T TCF7L2 Intron 0.28 TCGA-L5-A8NS-01 10 121658235 121658235 T A SEC23IP Missense_Mutation p.S154T 0.06 tolerated(1) benign(0) TCGA-L5-A8NS-01 10 127519197 127519197 C G BCCIP Missense_Mutation p.L130V 0.08 tolerated(0.8) benign(0.122) TCGA-L5-A8NS-01 10 134686228 134686228 G A TTC40 Missense_Mutation p.S1488L 0.17 deleterious(0) benign(0.128) TCGA-L5-A8NS-01 10 26414446 26414446 A G MYO3A Missense_Mutation p.R675G 0.07 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 10 37490164 37490164 G A ANKRD30A Missense_Mutation p.S871N 0.09 tolerated(0.54) benign(0.032) TCGA-L5-A8NS-01 10 44112087 44112087 C G ZNF485 Nonsense_Mutation p.S199* 0.06 TCGA-L5-A8NS-01 10 51093340 51093340 A G PARG Missense_Mutation p.V95A 0.19 tolerated(0.68) benign(0.37) TCGA-L5-A8NS-01 10 5567315 5567315 C A CALML3 Silent p.A89A 0.18 TCGA-L5-A8NS-01 10 5804539 5804539 C G FAM208B Missense_Mutation p.L2407V 0.07 deleterious(0) possibly_damaging(0.661) TCGA-L5-A8NS-01 10 60994184 60994184 C G PHYHIPL Nonsense_Mutation p.S76* 0.23 TCGA-L5-A8NS-01 10 6472851 6472851 C T PRKCQ Missense_Mutation p.R629H 0.18 deleterious(0) possibly_damaging(0.867) TCGA-L5-A8NS-01 10 6527138 6527138 A C PRKCQ Missense_Mutation p.C332G 0.08 tolerated(0.38) benign(0) TCGA-L5-A8NS-01 10 70405161 70405161 T C TET1 Missense_Mutation p.V892A 0.18 deleterious(0.04) benign(0.238) TCGA-L5-A8NS-01 10 70646130 70646130 G C STOX1 Missense_Mutation p.A860P 0.16 tolerated(0.05) benign(0.212) TCGA-L5-A8NS-01 10 75305350 75305350 G A USP54 Silent p.F107F 0.06 TCGA-L5-A8NS-01 10 860788 860788 T A LARP4B Missense_Mutation p.D608V 0.09 tolerated(0.16) possibly_damaging(0.558) TCGA-L5-A8NS-01 10 87482894 87482894 G A GRID1 Silent p.G621G 0.38 TCGA-L5-A8NS-01 10 89474760 89474760 A C PAPSS2 Missense_Mutation p.I220L 0.06 tolerated(0.33) benign(0.003) TCGA-L5-A8NS-01 10 91177056 91177056 G A IFIT5 Missense_Mutation p.V34I 0.27 deleterious(0.01) benign(0.017) TCGA-L5-A8NS-01 10 95451832 95451832 C G FRA10AC1 Missense_Mutation p.K133N 0.09 deleterious(0) possibly_damaging(0.58) TCGA-L5-A8NS-01 10 96352185 96352185 G A HELLS Missense_Mutation p.D629N 0.18 deleterious(0) benign(0.212) TCGA-L5-A8NS-01 11 108150277 108150277 T C ATM Missense_Mutation p.L1115P 0.28 tolerated(0.14) benign(0.045) TCGA-L5-A8NS-01 11 108381095 108381095 A G EXPH5 Silent p.H1713H 0.10 TCGA-L5-A8NS-01 11 111853109 111853111 TGG CTGA DIXDC1 Nonsense_Mutation p.G272* 0.14 TCGA-L5-A8NS-01 11 113102449 113102449 G C NCAM1 Missense_Mutation p.G440A 0.16 deleterious(0.01) possibly_damaging(0.722) TCGA-L5-A8NS-01 11 113146690 113146690 C T NCAM1 3'Flank 0.11 TCGA-L5-A8NS-01 11 113280442 113280442 G T DRD2 3'UTR 0.38 TCGA-L5-A8NS-01 11 117391983 117391983 C T DSCAML1 Missense_Mutation p.E419K 0.08 tolerated(0.68) benign(0.002) TCGA-L5-A8NS-01 11 118037675 118037675 C G SCN2B Missense_Mutation p.S192T 0.19 tolerated(0.57) benign(0.005) TCGA-L5-A8NS-01 11 118842635 118842635 C A FOXR1 5'UTR 0.15 TCGA-L5-A8NS-01 11 120837934 120837934 C A GRIK4 Missense_Mutation p.A766D 0.15 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NS-01 11 122733129 122733129 C A CRTAM Intron 0.18 TCGA-L5-A8NS-01 11 12278449 12278449 G A MICAL2 Missense_Mutation p.E1025K 0.10 deleterious(0.01) possibly_damaging(0.73) TCGA-L5-A8NS-01 11 12315652 12315652 A T MICALCL Missense_Mutation p.K225I 0.24 deleterious(0) probably_damaging(0.924) TCGA-L5-A8NS-01 11 125333396 125333396 A C FEZ1 Missense_Mutation p.L161R 0.11 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 11 126343242 126343242 G A KIRREL3 Nonsense_Mutation p.R185* 0.12 TCGA-L5-A8NS-01 11 134240971 134240971 G T GLB1L2 Missense_Mutation p.G429W 0.16 deleterious(0) probably_damaging(0.984) TCGA-L5-A8NS-01 11 20959334 20959334 A C NELL1 Missense_Mutation p.K334Q 0.12 tolerated(0.63) benign(0.131) TCGA-L5-A8NS-01 11 27017174 27017174 G A FIBIN 3'UTR 0.07 TCGA-L5-A8NS-01 11 31815069 31815069 G A PAX6 Nonsense_Mutation p.R331* 0.19 TCGA-L5-A8NS-01 11 32987932 32987932 G C QSER1 Missense_Mutation p.V1557L 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A8NS-01 11 33129939 33129939 A T CSTF3 Missense_Mutation p.V84D 0.28 deleterious(0) possibly_damaging(0.876) TCGA-L5-A8NS-01 11 33777435 33777435 C T FBXO3 Missense_Mutation p.R187K 0.18 deleterious(0.03) probably_damaging(0.98) TCGA-L5-A8NS-01 11 45671517 45671517 G T CHST1 Missense_Mutation p.F319L 0.21 deleterious(0) possibly_damaging(0.872) TCGA-L5-A8NS-01 11 46884284 46884284 T G LRP4 Missense_Mutation p.K1753T 0.08 deleterious(0.01) benign(0.177) TCGA-L5-A8NS-01 11 48511187 48511187 C T OR4A47 Silent p.N281N 0.22 TCGA-L5-A8NS-01 11 4945468 4945468 G A OR51G1 Silent p.C34C 0.33 TCGA-L5-A8NS-01 11 55703203 55703203 A G OR5I1 Missense_Mutation p.L225P 0.21 tolerated(0.08) possibly_damaging(0.478) TCGA-L5-A8NS-01 11 57088071 57088071 A T TNKS1BP1 Silent p.G70G 0.06 TCGA-L5-A8NS-01 11 58893614 58893614 G A FAM111B Missense_Mutation p.E682K 0.09 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NS-01 11 59947376 59947376 G A MS4A6A Silent p.S98S 0.08 TCGA-L5-A8NS-01 11 60899821 60899821 C T VPS37C Missense_Mutation p.R180H 0.16 tolerated(0.38) benign(0.002) TCGA-L5-A8NS-01 11 65266920 65266920 T A MALAT1 RNA 0.35 TCGA-L5-A8NS-01 11 65267463 65267463 G A MALAT1 RNA 0.23 TCGA-L5-A8NS-01 11 65270548 65270548 G C MALAT1 RNA 0.15 TCGA-L5-A8NS-01 11 65346828 65346828 C T EHBP1L1 Missense_Mutation p.P60L 0.23 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NS-01 11 65563510 65563510 A T OVOL1 3'UTR 0.06 TCGA-L5-A8NS-01 11 66327669 66327669 G T CTSF 3'Flank 0.24 TCGA-L5-A8NS-01 11 70281550 70281550 C T CTTN Intron 0.13 TCGA-L5-A8NS-01 11 7110456 7110456 C T RBMXL2 Silent p.V35V 0.45 TCGA-L5-A8NS-01 11 71939789 71939810 CCCCGCTGCCCCCGCGCTCTGG - INPPL1 Frame_Shift_Del p.L141Pfs*31 0.14 TCGA-L5-A8NS-01 11 72613670 72613670 T C FCHSD2 Missense_Mutation p.Y281C 0.15 tolerated(0.18) possibly_damaging(0.847) TCGA-L5-A8NS-01 11 74203330 74203330 G C LIPT2 Missense_Mutation p.I182M 0.06 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 11 74547540 74547540 T A RNF169 Nonsense_Mutation p.L631* 0.25 TCGA-L5-A8NS-01 11 76814112 76814112 G A OMP Missense_Mutation p.G76D 0.29 deleterious_low_confidence(0) probably_damaging(1) TCGA-L5-A8NS-01 11 8161539 8161539 A - RIC3 Frame_Shift_Del p.L109Yfs*46 0.12 TCGA-L5-A8NS-01 11 85961397 85961397 C G EED Missense_Mutation p.N58K 0.15 tolerated(0.52) benign(0.13) TCGA-L5-A8NS-01 11 86782653 86782653 A C TMEM135 Missense_Mutation p.S120R 0.16 deleterious(0.01) possibly_damaging(0.614) TCGA-L5-A8NS-01 11 89537599 89537599 G C TRIM49 Silent p.L13L 0.18 TCGA-L5-A8NS-01 11 94730972 94730972 G C KDM4D Missense_Mutation p.D146H 0.05 deleterious(0) probably_damaging(0.958) TCGA-L5-A8NS-01 12 10194069 10194069 C G CLEC9A 5'UTR 0.23 TCGA-L5-A8NS-01 12 10525766 10525766 T C KLRK1 Missense_Mutation p.I200V 0.24 tolerated(0.21) benign(0.005) TCGA-L5-A8NS-01 12 105440749 105440749 T G ALDH1L2 Splice_Site p.X563_splice 0.27 TCGA-L5-A8NS-01 12 10954817 10954817 A T TAS2R7 Missense_Mutation p.L118H 0.19 deleterious(0) probably_damaging(0.938) TCGA-L5-A8NS-01 12 11420839 11420839 G C PRB3 Missense_Mutation p.P115R 0.16 deleterious(0.02) unknown(0) TCGA-L5-A8NS-01 12 124229215 124229215 C G ATP6V0A2 Silent p.L466L 0.11 TCGA-L5-A8NS-01 12 124413856 124413856 A T DNAH10 Missense_Mutation p.N3996I 0.47 probably_damaging(1) TCGA-L5-A8NS-01 12 130833904 130833904 C T PIWIL1 Silent p.N285N 0.16 TCGA-L5-A8NS-01 12 133233814 133233814 G C POLE Missense_Mutation p.P1164A 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 12 16111249 16111249 C G DERA Missense_Mutation p.A86G 0.34 tolerated(0.14) benign(0.345) TCGA-L5-A8NS-01 12 3982547 3982547 A C PARP11 5'Flank 0.23 TCGA-L5-A8NS-01 12 39967617 39967632 CATTCATCCAGCAAGG - ABCD2 Frame_Shift_Del p.A630Vfs*27 0.23 TCGA-L5-A8NS-01 12 40761673 40761673 G C LRRK2 3'UTR 0.06 TCGA-L5-A8NS-01 12 49726977 49726977 A G C1QL4 Missense_Mutation p.Y193H 0.18 deleterious(0) probably_damaging(0.928) TCGA-L5-A8NS-01 12 5022431 5022431 T G KCNA1 3'UTR 0.21 TCGA-L5-A8NS-01 12 53188100 53188100 G C KRT3 Missense_Mutation p.Q221E 0.26 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NS-01 12 53931215 53931215 G A ATF7 Missense_Mutation p.P129L 0.08 tolerated(0.24) benign(0.001) TCGA-L5-A8NS-01 12 58139586 58139586 C T TSPAN31 Missense_Mutation p.S41F 0.16 deleterious(0) probably_damaging(0.983) TCGA-L5-A8NS-01 12 63953276 63953276 A T DPY19L2 3'UTR 0.14 TCGA-L5-A8NS-01 12 64811879 64811879 C G XPOT Nonsense_Mutation p.S85* 0.33 TCGA-L5-A8NS-01 12 65702437 65702437 T C MSRB3 Intron 0.17 TCGA-L5-A8NS-01 12 6777029 6777029 G - ZNF384 Frame_Shift_Del p.Q529Rfs*20 0.16 TCGA-L5-A8NS-01 12 68709911 68709911 G C MDM1 Silent p.T376T 0.08 TCGA-L5-A8NS-01 12 78605053 78605053 T A NAV3 3'Flank 0.31 TCGA-L5-A8NS-01 12 78605791 78605791 C A NAV3 3'Flank 0.44 TCGA-L5-A8NS-01 12 81191173 81191173 T G LIN7A 3'UTR 0.35 TCGA-L5-A8NS-01 12 81568672 81568672 C G ACSS3 Missense_Mutation p.Q402E 0.12 deleterious(0) possibly_damaging(0.872) TCGA-L5-A8NS-01 12 88519038 88519038 G C CEP290 Missense_Mutation p.L392V 0.18 benign(0.199) TCGA-L5-A8NS-01 12 88974092 88974092 G C KITLG 5'UTR 0.20 TCGA-L5-A8NS-01 12 89981844 89981844 G A ATP2B1 3'Flank 0.05 TCGA-L5-A8NS-01 12 95911860 95911860 T C USP44 3'UTR 0.23 TCGA-L5-A8NS-01 12 96266178 96266178 C T CCDC38 Missense_Mutation p.D447N 0.17 deleterious(0.01) possibly_damaging(0.881) TCGA-L5-A8NS-01 13 100190111 100190111 C T TM9SF2 Missense_Mutation p.P237L 0.14 deleterious(0.02) probably_damaging(0.982) TCGA-L5-A8NS-01 13 103544807 103544807 C T RP11-255P5.2 3'Flank 0.21 TCGA-L5-A8NS-01 13 21562178 21562178 G A LATS2 Missense_Mutation p.R581C 0.31 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NS-01 13 23904549 23904549 T C SACS Missense_Mutation p.D4489G 0.34 probably_damaging(0.998) TCGA-L5-A8NS-01 13 25453387 25453387 G A RNF17 Silent p.P1612P 0.45 TCGA-L5-A8NS-01 13 32798406 32798406 G C FRY Silent p.L1600L 0.15 TCGA-L5-A8NS-01 13 36410265 36410265 T G DCLK1 Missense_Mutation p.E378D 0.58 tolerated(0.3) benign(0.388) TCGA-L5-A8NS-01 13 42813501 42813501 T A DGKH 3'UTR 0.45 TCGA-L5-A8NS-01 13 50280504 50280504 G A KPNA3 Missense_Mutation p.A346V 0.07 deleterious(0.01) probably_damaging(0.978) TCGA-L5-A8NS-01 13 61987310 61987310 T A PCDH20 Missense_Mutation p.I308F 0.17 deleterious(0) probably_damaging(0.948) TCGA-L5-A8NS-01 13 67801399 67801399 C T PCDH9 Missense_Mutation p.D392N 0.14 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 13 79940817 79940817 G A RBM26 Silent p.P362P 0.16 TCGA-L5-A8NS-01 13 84451887 84451887 C A SLITRK1 3'UTR 0.37 TCGA-L5-A8NS-01 13 99092956 99092956 G A FARP1 Missense_Mutation p.E888K 0.25 deleterious(0.03) benign(0.283) TCGA-L5-A8NS-01 14 102676056 102676056 A T WDR20 Missense_Mutation p.M548L 0.27 tolerated(0.67) benign(0.006) TCGA-L5-A8NS-01 14 102916092 102916092 G C TECPR2 Missense_Mutation p.A1068P 0.11 deleterious(0.01) benign(0.206) TCGA-L5-A8NS-01 14 21490756 21490756 G T NDRG2 Intron 0.25 TCGA-L5-A8NS-01 14 21867861 21867861 C G CHD8 Missense_Mutation p.E1607D 0.27 tolerated(0.45) benign(0.006) TCGA-L5-A8NS-01 14 23568665 23568665 C G C14orf119 3'UTR 0.12 TCGA-L5-A8NS-01 14 24422949 24422949 C G DHRS4 5'UTR 0.07 TCGA-L5-A8NS-01 14 31364159 31364159 A C COCH 3'Flank 0.06 TCGA-L5-A8NS-01 14 31614117 31614117 C G HECTD1 Missense_Mutation p.D843H 0.13 tolerated(0.1) benign(0.04) TCGA-L5-A8NS-01 14 35465940 35465940 A C SRP54 Missense_Mutation p.K9Q 0.06 tolerated(0.22) benign(0.338) TCGA-L5-A8NS-01 14 36295691 36295691 C A BRMS1L 5'UTR 0.29 TCGA-L5-A8NS-01 14 50886125 50886125 C A MAP4K5 3'UTR 0.06 TCGA-L5-A8NS-01 14 51452686 51452686 G A TRIM9 Intron 0.10 TCGA-L5-A8NS-01 14 57877794 57877794 A T NAA30 3'UTR 0.07 TCGA-L5-A8NS-01 14 58896142 58896142 G A KIAA0586 Silent p.V99V 0.08 TCGA-L5-A8NS-01 14 61915966 61915966 C G PRKCH Nonsense_Mutation p.S233* 0.07 TCGA-L5-A8NS-01 14 63842372 63842372 G C PPP2R5E 3'UTR 0.15 TCGA-L5-A8NS-01 14 70713884 70713884 T G ADAM21P1 RNA 0.20 TCGA-L5-A8NS-01 14 73567049 73567049 G C RBM25 Intron 0.10 TCGA-L5-A8NS-01 14 73673101 73673101 G C PSEN1 Missense_Mutation p.M292I 0.18 tolerated(0.14) possibly_damaging(0.833) TCGA-L5-A8NS-01 14 73958537 73958537 C G HEATR4 Intron 0.13 TCGA-L5-A8NS-01 14 73959216 73959216 G A HEATR4 Intron 0.20 TCGA-L5-A8NS-01 14 74726342 74726342 G C VSX2 Missense_Mutation p.R206P 0.18 deleterious(0) probably_damaging(0.98) TCGA-L5-A8NS-01 14 76117441 76117441 G C C14orf1 3'UTR 0.23 TCGA-L5-A8NS-01 14 77845169 77845169 G C SAMD15 Missense_Mutation p.E470Q 0.12 tolerated(0.32) possibly_damaging(0.606) TCGA-L5-A8NS-01 14 81610476 81610476 C A TSHR Missense_Mutation p.L692I 0.10 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 14 92960745 92960745 T C SLC24A4 3'UTR 0.26 TCGA-L5-A8NS-01 14 93706599 93706599 G A BTBD7 3'UTR 0.23 TCGA-L5-A8NS-01 14 94186961 94186961 C T PRIMA1 3'UTR 0.17 TCGA-L5-A8NS-01 14 95569780 95569780 A C DICER1 Missense_Mutation p.L1318R 0.07 deleterious(0) probably_damaging(0.988) TCGA-L5-A8NS-01 15 101121079 101121079 T G LINS 5'UTR 0.07 TCGA-L5-A8NS-01 15 101561287 101561287 A T LRRK1 Missense_Mutation p.S547C 0.19 tolerated(0.06) possibly_damaging(0.541) TCGA-L5-A8NS-01 15 101717037 101717037 G C CHSY1 3'UTR 0.11 TCGA-L5-A8NS-01 15 20636371 20636371 G A HERC2P3 RNA 0.43 TCGA-L5-A8NS-01 15 22998467 22998467 G A CYFIP1 Silent p.K1053K 0.09 TCGA-L5-A8NS-01 15 22999460 22999460 G A CYFIP1 Missense_Mutation p.G1111E 0.32 deleterious(0) probably_damaging(0.986) TCGA-L5-A8NS-01 15 34064293 34064293 C A RYR3 Missense_Mutation p.L2997M 0.06 probably_damaging(0.999) TCGA-L5-A8NS-01 15 34546616 34546616 C T SLC12A6 Missense_Mutation p.V351I 0.26 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NS-01 15 37110470 37110470 T - CSNK1A1P1 RNA 0.15 TCGA-L5-A8NS-01 15 39881405 39881405 C T THBS1 Silent p.C592C 0.14 TCGA-L5-A8NS-01 15 40558592 40558592 C T PAK6 Missense_Mutation p.R252W 0.25 deleterious(0) benign(0.386) TCGA-L5-A8NS-01 15 41068808 41068808 G C DNAJC17 Missense_Mutation p.R105G 0.12 deleterious(0.01) benign(0.144) TCGA-L5-A8NS-01 15 42003273 42003273 A T MGA Missense_Mutation p.K937M 0.24 deleterious(0) possibly_damaging(0.75) TCGA-L5-A8NS-01 15 42434796 42434796 C A PLA2G4F Missense_Mutation p.E753D 0.18 tolerated(0.19) benign(0.007) TCGA-L5-A8NS-01 15 42503004 42503004 G C TMEM87A 3'UTR 0.13 TCGA-L5-A8NS-01 15 43307940 43307940 T G UBR1 Missense_Mutation p.Y1052S 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-L5-A8NS-01 15 59970119 59970119 T A BNIP2 Missense_Mutation p.S276C 0.23 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 15 64980772 64980772 T C OAZ2 3'UTR 0.14 TCGA-L5-A8NS-01 15 65676433 65676433 G A IGDCC4 Missense_Mutation p.P1223S 0.07 tolerated_low_confidence(0.09) benign(0.004) TCGA-L5-A8NS-01 15 77323585 77323585 A G PSTPIP1 Missense_Mutation p.N236S 0.35 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 15 78471961 78471961 G A ACSBG1 Missense_Mutation p.A472V 0.41 deleterious(0) possibly_damaging(0.512) TCGA-L5-A8NS-01 15 85412209 85412209 G A ALPK3 3'UTR 0.17 TCGA-L5-A8NS-01 15 90611142 90611176 CGGCGGGTTCGACCGTGGAACGCCACAAGAAGGCC - ZNF710 Frame_Shift_Del p.T262Afs*8 0.47 TCGA-L5-A8NS-01 15 93011646 93011646 A G ST8SIA2 3'UTR 0.07 TCGA-L5-A8NS-01 15 97328417 97328417 A G SPATA8 3'UTR 0.36 TCGA-L5-A8NS-01 16 10788328 10788328 C A TEKT5 Nonsense_Mutation p.E135* 0.11 TCGA-L5-A8NS-01 16 11348395 11348395 G C SOCS1 3'UTR 0.11 TCGA-L5-A8NS-01 16 18856783 18856783 T A SMG1 Nonsense_Mutation p.K2063* 0.21 TCGA-L5-A8NS-01 16 2094744 2094744 C A NTHL1 Missense_Mutation p.V146L 0.10 deleterious(0.02) benign(0.445) TCGA-L5-A8NS-01 16 21145766 21145766 A T DNAH3 Missense_Mutation p.I299N 0.12 deleterious(0) probably_damaging(0.968) TCGA-L5-A8NS-01 16 2130299 2130299 G A TSC2 Silent p.V1177V 0.26 TCGA-L5-A8NS-01 16 2262347 2262347 G T PGP 3'UTR 0.20 TCGA-L5-A8NS-01 16 2495585 2495585 C G CCNF Silent p.L352L 0.11 TCGA-L5-A8NS-01 16 28857357 28857357 G A TUFM Silent p.L41L 0.09 TCGA-L5-A8NS-01 16 28909674 28909674 C T ATP2A1 Missense_Mutation p.R556W 0.14 deleterious(0) possibly_damaging(0.802) TCGA-L5-A8NS-01 16 29825222 29825222 G A PRRT2 Missense_Mutation p.V283I 0.18 tolerated(0.31) possibly_damaging(0.551) TCGA-L5-A8NS-01 16 30036934 30036934 C T FAM57B Intron 0.31 TCGA-L5-A8NS-01 16 30777483 30777483 G C RNF40 Splice_Site p.X332_splice 0.07 TCGA-L5-A8NS-01 16 31151676 31151676 C T PRSS36 Missense_Mutation p.G743D 0.38 tolerated(0.2) probably_damaging(0.943) TCGA-L5-A8NS-01 16 427383 427383 A T TMEM8A Missense_Mutation p.L168M 0.13 tolerated(0.07) benign(0.027) TCGA-L5-A8NS-01 16 46717491 46717491 C G VPS35 Missense_Mutation p.E11Q 0.09 deleterious(0.01) benign(0.294) TCGA-L5-A8NS-01 16 50766088 50766088 T C NOD2 3'UTR 0.41 TCGA-L5-A8NS-01 16 67516500 67516500 C T AGRP 3'UTR 0.18 TCGA-L5-A8NS-01 16 67866141 67866141 G A CENPT Silent p.I93I 0.10 TCGA-L5-A8NS-01 16 70599151 70599151 G C SF3B3 Missense_Mutation p.E883Q 0.10 tolerated(0.14) possibly_damaging(0.616) TCGA-L5-A8NS-01 16 70714902 70714902 G C MTSS1L Missense_Mutation p.F32L 0.15 tolerated(0.05) probably_damaging(0.997) TCGA-L5-A8NS-01 16 71889282 71889282 A C ATXN1L 3'UTR 0.07 TCGA-L5-A8NS-01 16 72020240 72020240 G A PKD1L3 RNA 0.23 TCGA-L5-A8NS-01 16 72110554 72110554 C G HPR Missense_Mutation p.I207M 0.07 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 16 81819602 81819602 C G PLCG2 Missense_Mutation p.T3S 0.09 tolerated_low_confidence(0.82) benign(0.006) TCGA-L5-A8NS-01 16 83999150 83999150 G T OSGIN1 Silent p.L324L 0.19 TCGA-L5-A8NS-01 16 89620242 89620242 C T SPG7 Silent p.Y659Y 0.10 TCGA-L5-A8NS-01 16 89816138 89816138 C A FANCA Missense_Mutation p.R1080L 0.16 deleterious(0) benign(0.25) TCGA-L5-A8NS-01 17 10405218 10405218 G T MYH1 Missense_Mutation p.S1041Y 0.39 deleterious(0.01) possibly_damaging(0.905) TCGA-L5-A8NS-01 17 1564934 1564934 G C PRPF8 Silent p.L1391L 0.24 TCGA-L5-A8NS-01 17 16699483 16699521 TCCAAGTGTAAGACCCACTGCTTAGCAACAAAGAAGCTG ACTACTGTTCCAAGTGTTCCAAGTGTAAGACCCACTGCTTAGCAACAAA CCDC144A 3'UTR 0.15 TCGA-L5-A8NS-01 17 16699515 16699521 GAAGCTG - CCDC144A 3'UTR 0.10 TCGA-L5-A8NS-01 17 18415008 18415008 T C USP32P2 RNA 0.19 TCGA-L5-A8NS-01 17 25909803 25909803 G A KSR1 Missense_Mutation p.A81T 0.17 tolerated(0.47) benign(0.009) TCGA-L5-A8NS-01 17 26656251 26656251 G C IFT20 Missense_Mutation p.Q115E 0.17 tolerated(0.39) benign(0.106) TCGA-L5-A8NS-01 17 30696738 30696738 G C ZNF207 Missense_Mutation p.G482A 0.33 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NS-01 17 32963118 32963118 G C TMEM132E Silent p.V600V 0.14 TCGA-L5-A8NS-01 17 32963119 32963119 G T TMEM132E Missense_Mutation p.V601L 0.15 deleterious(0.02) possibly_damaging(0.548) TCGA-L5-A8NS-01 17 34072683 34072683 G A GAS2L2 Silent p.N611N 0.14 TCGA-L5-A8NS-01 17 35687309 35687309 G C ACACA Missense_Mutation p.L48V 0.07 tolerated_low_confidence(0.51) benign(0.01) TCGA-L5-A8NS-01 17 36719671 36719671 T A SRCIN1 Missense_Mutation p.I210F 0.17 tolerated(1) probably_damaging(0.999) TCGA-L5-A8NS-01 17 37234173 37234173 G - PLXDC1 Frame_Shift_Del p.T394Qfs*7 0.28 TCGA-L5-A8NS-01 17 37898911 37898911 T A GRB7 Missense_Mutation p.I106N 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A8NS-01 17 37898928 37898928 A C GRB7 Missense_Mutation p.S112R 0.16 tolerated(0.22) possibly_damaging(0.474) TCGA-L5-A8NS-01 17 39680131 39680131 C T KRT19 Missense_Mutation p.S356N 0.11 deleterious(0) benign(0.234) TCGA-L5-A8NS-01 17 40695907 40695907 C T NAGLU Missense_Mutation p.A628V 0.09 tolerated(0.45) benign(0.004) TCGA-L5-A8NS-01 17 40834759 40834759 C A CCR10 5'Flank 0.14 TCGA-L5-A8NS-01 17 41244511 41244511 C G BRCA1 Missense_Mutation p.E1013Q 0.07 deleterious(0.01) benign(0.071) TCGA-L5-A8NS-01 17 41738715 41738715 G C MEOX1 Nonsense_Mutation p.S63* 0.10 TCGA-L5-A8NS-01 17 48151513 48151513 C T ITGA3 Silent p.I417I 0.16 TCGA-L5-A8NS-01 17 48917666 48917666 A T WFIKKN2 Missense_Mutation p.E339D 0.23 tolerated(0.42) possibly_damaging(0.726) TCGA-L5-A8NS-01 17 5042629 5042629 G A USP6 Silent p.R386R 0.08 TCGA-L5-A8NS-01 17 56060674 56060674 A C VEZF1 Silent p.P38P 0.11 TCGA-L5-A8NS-01 17 57290842 57290842 C T SMG8 Silent p.D886D 0.31 TCGA-L5-A8NS-01 17 57917559 57917562 GCCC T VMP1 3'UTR 0.21 TCGA-L5-A8NS-01 17 62855703 62855703 T A LRRC37A3 Missense_Mutation p.T1521S 0.05 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NS-01 17 64216829 64216829 C T APOH Silent p.T149T 0.31 TCGA-L5-A8NS-01 17 7147321 7147321 G A CTDNEP1 3'UTR 0.21 TCGA-L5-A8NS-01 17 72915838 72915838 C T USH1G Missense_Mutation p.D365N 0.18 deleterious(0.02) benign(0.021) TCGA-L5-A8NS-01 17 73232725 73232725 C G GGA3 3'UTR 0.23 TCGA-L5-A8NS-01 17 73607999 73607999 G A MYO15B 3'Flank 0.06 TCGA-L5-A8NS-01 17 75212817 75212817 G C SEC14L1 3'UTR 0.15 TCGA-L5-A8NS-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.48 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 17 7690293 7690293 T C DNAH2 Missense_Mutation p.M2182T 0.27 probably_damaging(0.999) TCGA-L5-A8NS-01 17 79477615 79477615 C G ACTG1 3'UTR 0.31 TCGA-L5-A8NS-01 18 10671336 10671336 C T PIEZO2 3'Flank 0.19 TCGA-L5-A8NS-01 18 13387489 13387489 G T LDLRAD4 5'UTR 0.30 TCGA-L5-A8NS-01 18 19994977 19994977 G C CTAGE1 3'UTR 0.15 TCGA-L5-A8NS-01 18 24129055 24129055 G A KCTD1 5'UTR 0.29 TCGA-L5-A8NS-01 18 28662987 28662987 T G DSC2 Missense_Mutation p.M328L 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-L5-A8NS-01 18 334900 334900 A T COLEC12 Missense_Mutation p.V553D 0.05 tolerated(0.45) unknown(0) TCGA-L5-A8NS-01 18 43846836 43846836 A G C18orf25 3'UTR 0.26 TCGA-L5-A8NS-01 18 44221958 44221958 C T LOXHD1 Missense_Mutation p.R96Q 0.30 tolerated(0.32) possibly_damaging(0.776) TCGA-L5-A8NS-01 18 44260185 44260190 GTGCAC - ST8SIA5 In_Frame_Del p.V316_H317del 0.14 TCGA-L5-A8NS-01 18 63530073 63530073 A G CDH7 Missense_Mutation p.N595S 0.40 tolerated(0.38) benign(0.003) TCGA-L5-A8NS-01 18 8638156 8638156 G C RAB12 Missense_Mutation p.D211H 0.07 deleterious(0) benign(0.436) TCGA-L5-A8NS-01 18 9257391 9257391 G A ANKRD12 Missense_Mutation p.A1376T 0.17 tolerated_low_confidence(0.32) benign(0.001) TCGA-L5-A8NS-01 19 11915443 11915443 G C ZNF491 5'UTR 0.16 TCGA-L5-A8NS-01 19 12760814 12760814 T A MAN2B1 Missense_Mutation p.K727M 0.10 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 19 13249067 13249067 C T NACC1 Silent p.P477P 0.24 TCGA-L5-A8NS-01 19 14625851 14625851 T G DNAJB1 3'UTR 0.15 TCGA-L5-A8NS-01 19 15640544 15640544 C A CYP4F22 Missense_Mutation p.Q83K 0.22 tolerated(0.83) benign(0.007) TCGA-L5-A8NS-01 19 1802537 1802537 C T ATP8B3 Missense_Mutation p.G338S 0.11 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NS-01 19 18119552 18119552 C T ARRDC2 Missense_Mutation p.R103C 0.27 deleterious(0.01) benign(0.126) TCGA-L5-A8NS-01 19 18976916 18976916 T A UPF1 Missense_Mutation p.Y1101N 0.14 deleterious_low_confidence(0.04) probably_damaging(0.989) TCGA-L5-A8NS-01 19 19757091 19757091 G C ATP13A1 Silent p.T1057T 0.22 TCGA-L5-A8NS-01 19 22574641 22574641 C T ZNF98 Missense_Mutation p.E466K 0.11 tolerated(0.07) benign(0.277) TCGA-L5-A8NS-01 19 2716896 2716896 A - DIRAS1 3'UTR 0.16 TCGA-L5-A8NS-01 19 33878943 33878943 A C PEPD Silent p.T399T 0.07 TCGA-L5-A8NS-01 19 36027767 36027767 A G GAPDHS Silent p.P40P 0.14 TCGA-L5-A8NS-01 19 36038043 36038043 C A TMEM147 Missense_Mutation p.A151D 0.13 deleterious(0.02) possibly_damaging(0.642) TCGA-L5-A8NS-01 19 36379347 36379347 C A NFKBID 3'UTR 0.07 TCGA-L5-A8NS-01 19 37903344 37903344 C T ZNF569 3'UTR 0.12 TCGA-L5-A8NS-01 19 41398059 41398059 T A CYP2G1P Splice_Site 0.26 TCGA-L5-A8NS-01 19 43683274 43683274 A G PSG5 Intron 0.30 TCGA-L5-A8NS-01 19 47200420 47200420 G A PRKD2 Silent p.Y437Y 0.29 TCGA-L5-A8NS-01 19 47278775 47278775 C T SLC1A5 Missense_Mutation p.V540I 0.13 deleterious(0.05) benign(0.049) TCGA-L5-A8NS-01 19 49243912 49243912 C T RASIP1 5'UTR 0.12 TCGA-L5-A8NS-01 19 50154128 50154128 C G SCAF1 Missense_Mutation p.S161C 0.53 unknown(0) TCGA-L5-A8NS-01 19 50661582 50661587 CCAACA - IZUMO2 In_Frame_Del p.V145_L146del 0.23 TCGA-L5-A8NS-01 19 51530735 51530735 C T KLK11 Silent p.S13S 0.30 TCGA-L5-A8NS-01 19 53473854 53473854 T A ZNF702P RNA 0.29 TCGA-L5-A8NS-01 19 57293467 57293467 C G ZIM2 Missense_Mutation p.G167A 0.24 tolerated(0.16) benign(0.008) TCGA-L5-A8NS-01 19 57327528 57327528 T G PEG3 Missense_Mutation p.K761T 0.17 deleterious(0.04) benign(0.025) TCGA-L5-A8NS-01 19 5745922 5745922 A T CATSPERD Splice_Site p.X220_splice 0.23 TCGA-L5-A8NS-01 19 57802868 57802868 G A ZNF460 Missense_Mutation p.S320N 0.27 tolerated(0.12) possibly_damaging(0.642) TCGA-L5-A8NS-01 19 57955138 57955138 C G ZNF749 Missense_Mutation p.Q208E 0.22 tolerated(0.2) benign(0.217) TCGA-L5-A8NS-01 19 57987094 57987094 C G AC004076.9 Missense_Mutation p.D45H 0.06 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 19 7747206 7747206 G A TRAPPC5 Missense_Mutation p.E23K 0.17 deleterious(0.02) benign(0.075) TCGA-L5-A8NS-01 19 9021077 9021077 T G MUC16 Missense_Mutation p.T12416P 0.06 probably_damaging(0.965) TCGA-L5-A8NS-01 1 103544425 103544425 C T COL11A1 Missense_Mutation p.G93R 0.12 probably_damaging(0.981) TCGA-L5-A8NS-01 1 110562227 110562227 T C AHCYL1 Missense_Mutation p.Y482H 0.07 tolerated(0.05) possibly_damaging(0.858) TCGA-L5-A8NS-01 1 110565855 110565855 C G AHCYL1 3'UTR 0.15 TCGA-L5-A8NS-01 1 112020764 112020764 G T C1orf162 3'UTR 0.17 TCGA-L5-A8NS-01 1 1147484 1147484 C A TNFRSF4 Missense_Mutation p.A158S 0.09 deleterious(0.02) possibly_damaging(0.821) TCGA-L5-A8NS-01 1 115216556 115216556 C A AMPD1 Missense_Mutation p.D683Y 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 1 11577655 11577655 A G PTCHD2 Missense_Mutation p.T629A 0.14 tolerated(0.61) benign(0.002) TCGA-L5-A8NS-01 1 1170248 1170248 G C B3GALT6 3'UTR 0.05 TCGA-L5-A8NS-01 1 12776139 12776139 G A AADACL3 5'Flank 0.19 TCGA-L5-A8NS-01 1 13001134 13001134 C G PRAMEF6 Missense_Mutation p.K183N 0.17 tolerated(0.08) possibly_damaging(0.795) TCGA-L5-A8NS-01 1 145112376 145112376 C G SEC22B RNA 0.06 TCGA-L5-A8NS-01 1 145416492 145416512 CTACATTGGCACAACTATAAT A HFE2 Frame_Shift_Del p.Y280Hfs*25 0.16 TCGA-L5-A8NS-01 1 147230210 147230210 G A GJA5 3'UTR 0.37 TCGA-L5-A8NS-01 1 150235229 150235229 T G CA14 Nonsense_Mutation p.Y174* 0.10 TCGA-L5-A8NS-01 1 152733635 152733635 A G KPRP Missense_Mutation p.D524G 0.24 deleterious_low_confidence(0) possibly_damaging(0.908) TCGA-L5-A8NS-01 1 15639618 15639618 G C FHAD1 Missense_Mutation p.E75Q 0.23 tolerated(0.08) probably_damaging(0.994) TCGA-L5-A8NS-01 1 157514250 157514250 A G FCRL5 Missense_Mutation p.S216P 0.10 tolerated(0.52) benign(0.023) TCGA-L5-A8NS-01 1 158819190 158819190 C T MNDA 3'UTR 0.39 TCGA-L5-A8NS-01 1 159683718 159683718 T C CRP Missense_Mutation p.Y91C 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 1 160811200 160811200 C T CD244 Missense_Mutation p.C157Y 0.15 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 1 161088650 161088650 C G NIT1 Nonsense_Mutation p.S26* 0.09 TCGA-L5-A8NS-01 1 16161935 16161935 T C RP11-169K16.9 RNA 0.04 TCGA-L5-A8NS-01 1 16736096 16736096 C T SPATA21 Missense_Mutation p.R196Q 0.07 tolerated(0.06) benign(0.037) TCGA-L5-A8NS-01 1 172379111 172379111 C A DNM3 3'UTR 0.21 TCGA-L5-A8NS-01 1 177001973 177001973 C T ASTN1 Missense_Mutation p.A162T 0.37 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-L5-A8NS-01 1 177898865 177898865 G A SEC16B 3'UTR 0.12 TCGA-L5-A8NS-01 1 177905447 177905447 T A SEC16B Missense_Mutation p.I853F 0.14 tolerated(0.24) benign(0.007) TCGA-L5-A8NS-01 1 197127330 197127330 C T ZBTB41 3'UTR 0.15 TCGA-L5-A8NS-01 1 200017357 200017357 G C NR5A2 Missense_Mutation p.R174T 0.06 deleterious(0) possibly_damaging(0.636) TCGA-L5-A8NS-01 1 201780815 201780815 G T NAV1 Missense_Mutation p.D1628Y 0.19 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 1 202887395 202887395 A G KLHL12 Silent p.F157F 0.18 TCGA-L5-A8NS-01 1 205035662 205035662 C T CNTN2 Missense_Mutation p.P637L 0.50 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 1 22222429 22222429 C G HSPG2 Missense_Mutation p.G77A 0.16 benign(0.009) TCGA-L5-A8NS-01 1 223438154 223438154 A T SUSD4 Missense_Mutation p.L181Q 0.30 deleterious(0.05) probably_damaging(0.977) TCGA-L5-A8NS-01 1 229625796 229625796 A G NUP133 Missense_Mutation p.L367P 0.15 deleterious(0.01) probably_damaging(0.995) TCGA-L5-A8NS-01 1 235331277 235331277 A G ARID4B 3'UTR 0.04 TCGA-L5-A8NS-01 1 237205815 237205815 C T RYR2 5'UTR 0.07 TCGA-L5-A8NS-01 1 241728310 241728310 G A KMO Silent p.L213L 0.10 TCGA-L5-A8NS-01 1 27687430 27687430 G A MAP3K6 Silent p.G634G 0.20 TCGA-L5-A8NS-01 1 31188993 31188993 G A MATN1 Missense_Mutation p.R324C 0.14 deleterious(0) probably_damaging(0.977) TCGA-L5-A8NS-01 1 3639996 3639996 G C TP73 Missense_Mutation p.G232A 0.12 tolerated(0.1) possibly_damaging(0.499) TCGA-L5-A8NS-01 1 43004883 43004883 A G CCDC30 Missense_Mutation p.N53D 0.07 tolerated(0.11) benign(0.066) TCGA-L5-A8NS-01 1 43394677 43394677 G A SLC2A1 Missense_Mutation p.R334W 0.32 deleterious(0.01) probably_damaging(1) TCGA-L5-A8NS-01 1 46650025 46650025 G C TSPAN1 Missense_Mutation p.G74R 0.14 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NS-01 1 46746102 46746102 G C LRRC41 Silent p.P629P 0.18 TCGA-L5-A8NS-01 1 48821377 48821377 A G SPATA6 Silent p.L387L 0.07 TCGA-L5-A8NS-01 1 52874343 52874343 G C PRPF38A Missense_Mutation p.K131N 0.13 deleterious(0) probably_damaging(0.981) TCGA-L5-A8NS-01 1 52991558 52991558 G A ZCCHC11 Missense_Mutation p.P132L 0.23 tolerated_low_confidence(0.21) benign(0.007) TCGA-L5-A8NS-01 1 55059688 55059688 C T ACOT11 Silent p.F149F 0.26 TCGA-L5-A8NS-01 1 55464886 55464886 C T BSND Silent p.I9I 0.29 TCGA-L5-A8NS-01 1 6692528 6692528 C T THAP3 Silent p.P137P 0.17 TCGA-L5-A8NS-01 1 70820576 70820576 C T HHLA3 5'UTR 0.32 TCGA-L5-A8NS-01 1 75627090 75627090 T C LHX8 3'UTR 0.30 TCGA-L5-A8NS-01 1 79093842 79093842 A T IFI44L Missense_Mutation p.D81V 0.26 tolerated(0.27) benign(0.09) TCGA-L5-A8NS-01 1 86905910 86905910 A G CLCA2 Missense_Mutation p.N428S 0.15 tolerated(1) benign(0.04) TCGA-L5-A8NS-01 1 91182393 91182393 C T BARHL2 Silent p.P120P 0.26 TCGA-L5-A8NS-01 1 92148941 92148941 C G TGFBR3 3'UTR 0.07 TCGA-L5-A8NS-01 1 981395 981395 G A AGRN Missense_Mutation p.R911Q 0.15 tolerated(0.1) benign(0.009) TCGA-L5-A8NS-01 20 23335170 23335170 C G NXT1 3'UTR 0.17 TCGA-L5-A8NS-01 20 30381826 30381826 A G TPX2 Missense_Mutation p.E562G 0.06 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NS-01 20 31787243 31787243 C T BPIFA4P RNA 0.25 TCGA-L5-A8NS-01 20 3847441 3847441 C G MAVS 3'UTR 0.10 TCGA-L5-A8NS-01 20 42311443 42311443 G A MYBL2 Missense_Mutation p.D66N 0.21 deleterious(0) possibly_damaging(0.52) TCGA-L5-A8NS-01 20 43955992 43955992 T G SDC4 Missense_Mutation p.Y170S 0.28 deleterious(0.01) possibly_damaging(0.9) TCGA-L5-A8NS-01 20 46281290 46281290 A T NCOA3 Nonsense_Mutation p.K1363* 0.34 TCGA-L5-A8NS-01 20 47605928 47605928 G A ARFGEF2 Silent p.P880P 0.28 TCGA-L5-A8NS-01 20 52645408 52645408 T C BCAS1 Silent p.K82K 0.09 TCGA-L5-A8NS-01 20 56188105 56188142 TTCCCCTTGGAGGGCAGAATCCCCCCACTCCCCATCCC - ZBP1 Intron 0.21 TCGA-L5-A8NS-01 20 57428467 57428467 G A GNAS Missense_Mutation p.M49I 0.22 deleterious_low_confidence(0) unknown(0) TCGA-L5-A8NS-01 20 58443550 58443550 C T SYCP2 Missense_Mutation p.M1302I 0.06 tolerated(0.46) benign(0.001) TCGA-L5-A8NS-01 20 61341150 61341150 C T NTSR1 Silent p.A197A 0.13 TCGA-L5-A8NS-01 20 62178745 62178745 G A SRMS Silent p.G24G 0.33 TCGA-L5-A8NS-01 20 62250681 62250681 C G GMEB2 Missense_Mutation p.D24H 0.24 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NS-01 21 39494412 39494412 C A DSCR8 5'UTR 0.31 TCGA-L5-A8NS-01 21 41450680 41450680 G A DSCAM Missense_Mutation p.R1549W 0.16 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NS-01 21 43531564 43531564 C G UMODL1 Silent p.T744T 0.33 TCGA-L5-A8NS-01 21 45877116 45877116 A G LRRC3 Missense_Mutation p.S197G 0.13 tolerated(0.26) benign(0.005) TCGA-L5-A8NS-01 22 20909317 20909317 C T MED15 Silent p.G111G 0.47 TCGA-L5-A8NS-01 22 24204366 24204366 T C SLC2A11 Missense_Mutation p.S40P 0.14 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NS-01 22 25151828 25151828 C G PIWIL3 Missense_Mutation p.K205N 0.20 tolerated(0.06) possibly_damaging(0.795) TCGA-L5-A8NS-01 22 30681878 30681878 C T GATSL3 Silent p.L288L 0.08 TCGA-L5-A8NS-01 22 30768244 30768244 C G CCDC157 Missense_Mutation p.A435G 0.18 deleterious(0.01) possibly_damaging(0.467) TCGA-L5-A8NS-01 22 30820758 30820758 G T SEC14L2 3'UTR 0.29 TCGA-L5-A8NS-01 22 37334439 37334439 G C CSF2RB Missense_Mutation p.Q863H 0.06 deleterious(0.03) possibly_damaging(0.885) TCGA-L5-A8NS-01 22 38014499 38014499 C T GGA1 Silent p.D83D 0.09 TCGA-L5-A8NS-01 22 38130719 38130719 G A TRIOBP Nonsense_Mutation p.W1459* 0.28 TCGA-L5-A8NS-01 22 38251609 38251609 C T EIF3L Missense_Mutation p.P111S 0.14 tolerated(0.23) benign(0.1) TCGA-L5-A8NS-01 22 38374120 38374120 G C SOX10 Missense_Mutation p.R151G 0.17 deleterious(0) probably_damaging(0.982) TCGA-L5-A8NS-01 22 47108185 47108185 T G CERK Silent p.R129R 0.20 TCGA-L5-A8NS-01 22 50845231 50845231 C T PPP6R2 Missense_Mutation p.P114L 0.16 deleterious(0.03) benign(0.233) TCGA-L5-A8NS-01 22 50882831 50882831 C G PPP6R2 3'Flank 0.11 TCGA-L5-A8NS-01 22 51135681 51135681 C A SHANK3 Missense_Mutation p.P439T 0.38 benign(0.012) TCGA-L5-A8NS-01 2 113332935 113332935 A C POLR1B Silent p.R1013R 0.15 TCGA-L5-A8NS-01 2 114258201 114258201 C T FOXD4L1 3'UTR 0.20 TCGA-L5-A8NS-01 2 149270966 149270966 T C MBD5 3'UTR 0.08 TCGA-L5-A8NS-01 2 160798256 160798256 C - PLA2R1 3'UTR 0.20 TCGA-L5-A8NS-01 2 162868348 162868348 C G DPP4 Missense_Mutation p.R596T 0.12 deleterious(0) probably_damaging(0.912) TCGA-L5-A8NS-01 2 162873287 162873287 T A DPP4 Missense_Mutation p.N520Y 0.13 tolerated(0.14) benign(0.009) TCGA-L5-A8NS-01 2 164464242 164464242 A G FIGN 3'UTR 0.21 TCGA-L5-A8NS-01 2 166810275 166810275 G C TTC21B 5'UTR 0.15 TCGA-L5-A8NS-01 2 171705836 171705836 G A GAD1 Missense_Mutation p.R387H 0.22 deleterious(0.01) possibly_damaging(0.733) TCGA-L5-A8NS-01 2 179443557 179443557 G T TTN Missense_Mutation p.P22734T 0.40 TCGA-L5-A8NS-01 2 179631200 179631200 C T TTN Missense_Mutation p.R3204Q 0.26 TCGA-L5-A8NS-01 2 187370271 187370271 G C ZC3H15 Missense_Mutation p.E271Q 0.10 tolerated(0.45) benign(0.01) TCGA-L5-A8NS-01 2 200136975 200136975 C G SATB2 Missense_Mutation p.D721H 0.08 deleterious_low_confidence(0.03) benign(0.043) TCGA-L5-A8NS-01 2 201342432 201342432 C T SPATS2L Missense_Mutation p.S452L 0.11 tolerated(0.22) benign(0.003) TCGA-L5-A8NS-01 2 202002157 202002157 C T CFLAR Intron 0.23 TCGA-L5-A8NS-01 2 205550892 205550903 GTTCTACTATAG - PARD3B Splice_Site p.X41_splice 0.23 TCGA-L5-A8NS-01 2 211471635 211471635 G A CPS1 Missense_Mutation p.R727Q 0.36 deleterious(0) probably_damaging(0.945) TCGA-L5-A8NS-01 2 215917253 215917253 G C ABCA12 Missense_Mutation p.F155L 0.07 tolerated(0.56) benign(0.002) TCGA-L5-A8NS-01 2 219458366 219458366 T G RQCD1 Intron 0.45 TCGA-L5-A8NS-01 2 223423540 223423540 T G SGPP2 Missense_Mutation p.F375V 0.11 deleterious(0) probably_damaging(0.988) TCGA-L5-A8NS-01 2 223773522 223773522 C T ACSL3 Missense_Mutation p.T11I 0.27 tolerated_low_confidence(0.19) benign(0.276) TCGA-L5-A8NS-01 2 226447094 226447094 G A NYAP2 Missense_Mutation p.D321N 0.32 deleterious(0) possibly_damaging(0.522) TCGA-L5-A8NS-01 2 233633414 233633414 T A KCNJ13 Missense_Mutation p.Q190H 0.26 deleterious(0) probably_damaging(0.966) TCGA-L5-A8NS-01 2 233743610 233743610 C T NGEF 3'UTR 0.39 TCGA-L5-A8NS-01 2 239176672 239176695 CCCTCGCCCTGGGCTTGGCTGTTA - PER2 Splice_Site p.X323_splice 0.09 TCGA-L5-A8NS-01 2 27246243 27246243 T G MAPRE3 Missense_Mutation p.C55W 0.11 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NS-01 2 32477679 32477679 G T NLRC4 Missense_Mutation p.T24K 0.51 deleterious(0.03) benign(0.198) TCGA-L5-A8NS-01 2 37306470 37306470 T G HEATR5B Missense_Mutation p.D44A 0.17 deleterious(0) probably_damaging(0.972) TCGA-L5-A8NS-01 2 42670648 42670648 T G KCNG3 3'UTR 0.30 TCGA-L5-A8NS-01 2 55616015 55616015 T G CCDC88A Missense_Mutation p.K58Q 0.15 deleterious(0.02) probably_damaging(0.981) TCGA-L5-A8NS-01 2 63832427 63832427 G A MDH1 Missense_Mutation p.R248H 0.16 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 2 69565629 69565629 G C GFPT1 Missense_Mutation p.D424E 0.08 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NS-01 2 70316056 70316056 C G PCBP1 3'UTR 0.13 TCGA-L5-A8NS-01 2 85770071 85770071 C T MAT2A Silent p.F333F 0.18 TCGA-L5-A8NS-01 2 99454593 99454593 C T KIAA1211L Silent p.E76E 0.12 TCGA-L5-A8NS-01 2 99984963 99984963 A T EIF5B Missense_Mutation p.E432D 0.12 benign(0.005) TCGA-L5-A8NS-01 3 100494124 100494124 A T ABI3BP Silent p.P752P 0.06 TCGA-L5-A8NS-01 3 10106449 10106449 G A FANCD2 Silent p.L686L 0.28 TCGA-L5-A8NS-01 3 101368741 101368741 T A ZBTB11 3'UTR 0.09 TCGA-L5-A8NS-01 3 101390974 101390974 C A ZBTB11 Missense_Mutation p.V132F 0.08 deleterious_low_confidence(0.03) benign(0.069) TCGA-L5-A8NS-01 3 10261453 10261453 C T IRAK2 Silent p.I331I 0.20 TCGA-L5-A8NS-01 3 111996674 111996674 T A SLC9C1 Missense_Mutation p.N118Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 3 119133256 119133256 G T ARHGAP31 Missense_Mutation p.S827I 0.29 deleterious(0.03) benign(0.015) TCGA-L5-A8NS-01 3 120123704 120123704 G C FSTL1 Missense_Mutation p.L193V 0.20 deleterious(0.01) benign(0.173) TCGA-L5-A8NS-01 3 122680064 122680064 G T SEMA5B Missense_Mutation p.P70H 0.15 deleterious_low_confidence(0) benign(0) TCGA-L5-A8NS-01 3 12625613 12625613 A G RAF1 3'UTR 0.40 TCGA-L5-A8NS-01 3 130409453 130409453 G A PIK3R4 Silent p.L1048L 0.29 TCGA-L5-A8NS-01 3 130893611 130893611 C T NEK11 Intron 0.34 TCGA-L5-A8NS-01 3 13379412 13379412 G A NUP210 Silent p.L1159L 0.42 TCGA-L5-A8NS-01 3 134270853 134270853 A T CEP63 Missense_Mutation p.E489V 0.27 tolerated(0.08) benign(0.041) TCGA-L5-A8NS-01 3 134977896 134977896 G A EPHB1 Silent p.K963K 0.24 TCGA-L5-A8NS-01 3 142226817 142226817 T C ATR Missense_Mutation p.T1663A 0.22 tolerated(0.7) benign(0.013) TCGA-L5-A8NS-01 3 14559283 14559283 G C GRIP2 RNA 0.32 TCGA-L5-A8NS-01 3 145924348 145924348 C T PLSCR4 Missense_Mutation p.A107T 0.35 tolerated(0.31) benign(0.004) TCGA-L5-A8NS-01 3 148890412 148890412 T G CP 3'UTR 0.38 TCGA-L5-A8NS-01 3 150128711 150128711 C T TSC22D2 Missense_Mutation p.S525F 0.21 deleterious(0) possibly_damaging(0.485) TCGA-L5-A8NS-01 3 150873950 150873950 T C MED12L Missense_Mutation p.W187R 0.16 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NS-01 3 152883915 152883915 G A RAP2B 3'UTR 0.11 TCGA-L5-A8NS-01 3 158409146 158409146 G C GFM1 Missense_Mutation p.E716Q 0.24 deleterious(0) possibly_damaging(0.644) TCGA-L5-A8NS-01 3 164905415 164905415 A C SLITRK3 3'UTR 0.09 TCGA-L5-A8NS-01 3 185361830 185361830 G A IGF2BP2 3'UTR 0.05 TCGA-L5-A8NS-01 3 190373709 190373709 G C IL1RAP Missense_Mutation p.Q459H 0.21 tolerated(0.05) probably_damaging(0.973) TCGA-L5-A8NS-01 3 195594983 195594983 C A TNK2 Missense_Mutation p.C792F 0.11 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-L5-A8NS-01 3 28378343 28378343 C T AZI2 Nonsense_Mutation p.W158* 0.17 TCGA-L5-A8NS-01 3 38738990 38738990 G T SCN10A Missense_Mutation p.D1907E 0.23 tolerated(0.65) possibly_damaging(0.682) TCGA-L5-A8NS-01 3 49051299 49051299 C T WDR6 Missense_Mutation p.R808C 0.13 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 3 58242358 58242358 G A ABHD6 Silent p.T15T 0.49 TCGA-L5-A8NS-01 3 71179678 71179678 C T FOXP1 Missense_Mutation p.A53T 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.494) TCGA-L5-A8NS-01 3 9023694 9023694 A C SRGAP3 3'UTR 0.39 TCGA-L5-A8NS-01 3 98520488 98520488 T C DCBLD2 Missense_Mutation p.K559R 0.10 tolerated(0.14) benign(0.029) TCGA-L5-A8NS-01 4 114209582 114209582 A G ANK2 Silent p.G739G 0.42 TCGA-L5-A8NS-01 4 114279811 114279811 C A ANK2 Missense_Mutation p.S3346Y 0.25 possibly_damaging(0.899) TCGA-L5-A8NS-01 4 115898357 115898357 T G NDST4 Missense_Mutation p.K351T 0.09 deleterious(0) possibly_damaging(0.908) TCGA-L5-A8NS-01 4 122766832 122766832 G T BBS7 Missense_Mutation p.Q353K 0.16 deleterious(0.01) benign(0.19) TCGA-L5-A8NS-01 4 129783293 129783293 T G JADE1 Missense_Mutation p.D472E 0.14 tolerated(0.1) benign(0.109) TCGA-L5-A8NS-01 4 154258854 154258854 G A TRIM2 3'UTR 0.10 TCGA-L5-A8NS-01 4 154258855 154258855 A T TRIM2 3'UTR 0.10 TCGA-L5-A8NS-01 4 154502684 154502684 C T KIAA0922 Silent p.Y288Y 0.19 TCGA-L5-A8NS-01 4 155749518 155749518 T A RBM46 3'UTR 0.32 TCGA-L5-A8NS-01 4 15638248 15638248 A G FBXL5 Missense_Mutation p.V212A 0.18 deleterious(0) possibly_damaging(0.734) TCGA-L5-A8NS-01 4 157683597 157683597 C G PDGFC 3'UTR 0.20 TCGA-L5-A8NS-01 4 183601454 183601454 G A TENM3 Missense_Mutation p.G531R 0.16 deleterious(0) probably_damaging(0.979) TCGA-L5-A8NS-01 4 183714584 183714584 A T TENM3 Missense_Mutation p.L2253F 0.11 deleterious(0.02) possibly_damaging(0.86) TCGA-L5-A8NS-01 4 184367434 184367434 G C CDKN2AIP Missense_Mutation p.Q199H 0.26 deleterious(0.02) unknown(0) TCGA-L5-A8NS-01 4 48136216 48136216 C T TXK 5'UTR 0.36 TCGA-L5-A8NS-01 4 52861992 52861992 G T LRRC66 Missense_Mutation p.P399H 0.18 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 4 54364900 54364900 T C LNX1 Missense_Mutation p.T296A 0.15 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 4 6323114 6323114 T C PPP2R2C 3'UTR 0.18 TCGA-L5-A8NS-01 4 72607566 72607566 C A GC 3'UTR 0.14 TCGA-L5-A8NS-01 4 74608299 74608299 A G IL8 3'UTR 0.14 TCGA-L5-A8NS-01 4 75041020 75041020 A G MTHFD2L Silent p.L117L 0.15 TCGA-L5-A8NS-01 4 76835482 76835482 A T NAAA 3'UTR 0.14 TCGA-L5-A8NS-01 4 7743064 7743064 A C SORCS2 3'UTR 0.20 TCGA-L5-A8NS-01 4 79340102 79340102 G A FRAS1 Splice_Site p.X1476_splice 0.19 TCGA-L5-A8NS-01 4 84382431 84382431 G A MRPS18C 3'UTR 0.15 TCGA-L5-A8NS-01 4 96140250 96140250 C A UNC5C Missense_Mutation p.M505I 0.09 tolerated(0.42) benign(0) TCGA-L5-A8NS-01 4 9827944 9827944 G C SLC2A9 3'UTR 0.11 TCGA-L5-A8NS-01 4 99997704 99997854 4:99997704-99997854 - ADH5 large deletion p.X189_splice 0.28 TCGA-L5-A8NS-01 5 131721070 131721071 GT - SLC22A5 Frame_Shift_Del p.C236Hfs*43 0.24 TCGA-L5-A8NS-01 5 135528018 135528018 C G AC009014.3 RNA 0.40 TCGA-L5-A8NS-01 5 137295438 137295438 C G FAM13B Missense_Mutation p.K436N 0.25 tolerated(0.16) benign(0.003) TCGA-L5-A8NS-01 5 140255825 140255825 A C PCDHA12 Missense_Mutation p.Q256H 0.15 deleterious_low_confidence(0.02) benign(0.003) TCGA-L5-A8NS-01 5 140475221 140475221 T C PCDHB2 Missense_Mutation p.F283L 0.17 tolerated_low_confidence(0.91) benign(0.308) TCGA-L5-A8NS-01 5 140482266 140482266 C T PCDHB3 Missense_Mutation p.P678L 0.12 tolerated_low_confidence(0.12) benign(0.001) TCGA-L5-A8NS-01 5 149782728 149782728 G A CD74 Missense_Mutation p.T258M 0.08 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NS-01 5 154395889 154395889 G A KIF4B Missense_Mutation p.E824K 0.20 tolerated(0.07) possibly_damaging(0.698) TCGA-L5-A8NS-01 5 167690329 167690329 C T TENM2 3'Flank 0.37 TCGA-L5-A8NS-01 5 169267766 169267766 C A DOCK2 Missense_Mutation p.F903L 0.14 tolerated(0.26) benign(0) TCGA-L5-A8NS-01 5 169506006 169506006 G C DOCK2 Missense_Mutation p.K1674N 0.12 tolerated(0.16) benign(0.056) TCGA-L5-A8NS-01 5 172362188 172362188 C A ERGIC1 Intron 0.13 TCGA-L5-A8NS-01 5 173386606 173386606 A T CPEB4 3'UTR 0.20 TCGA-L5-A8NS-01 5 176869671 176869671 G C GRK6 3'Flank 0.11 TCGA-L5-A8NS-01 5 177664975 177664975 C G COL23A1 3'UTR 0.28 TCGA-L5-A8NS-01 5 32255828 32255828 C G MTMR12 Missense_Mutation p.V254L 0.15 tolerated(1) benign(0.001) TCGA-L5-A8NS-01 5 33445442 33445442 G A TARS Missense_Mutation p.E24K 0.52 tolerated_low_confidence(0.79) benign(0.001) TCGA-L5-A8NS-01 5 35788993 35788993 C G SPEF2 Intron 0.24 TCGA-L5-A8NS-01 5 41927260 41927260 C - FBXO4 Frame_Shift_Del p.S112Lfs*10 0.32 TCGA-L5-A8NS-01 5 42806831 42806831 G C SEPP1 Intron 0.33 TCGA-L5-A8NS-01 5 64875276 64875276 G C PPWD1 Missense_Mutation p.E396Q 0.06 deleterious(0) possibly_damaging(0.69) TCGA-L5-A8NS-01 5 64946640 64946640 G C TRAPPC13 Missense_Mutation p.L144F 0.09 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 5 72373319 72373342 AGGTTTGTGTACTTTTTGTTTTGA - FCHO2 Splice_Site p.X616_splice 0.31 TCGA-L5-A8NS-01 5 72385492 72385492 A G FCHO2 3'UTR 0.17 TCGA-L5-A8NS-01 5 79084824 79084824 G A CMYA5 Silent p.L3862L 0.23 TCGA-L5-A8NS-01 5 89989976 89989976 C A GPR98 Nonsense_Mutation p.S2468* 0.44 TCGA-L5-A8NS-01 5 96514853 96514853 C G RIOK2 Missense_Mutation p.L37F 0.50 deleterious(0) probably_damaging(0.967) TCGA-L5-A8NS-01 6 107595332 107595332 T C PDSS2 Silent p.P177P 0.20 TCGA-L5-A8NS-01 6 108984758 108984758 G C FOXO3 Missense_Mutation p.G241A 0.12 deleterious(0) possibly_damaging(0.675) TCGA-L5-A8NS-01 6 12125918 12125918 G C HIVEP1 Missense_Mutation p.A1964P 0.05 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NS-01 6 125474998 125474998 G A TPD52L1 5'UTR 0.22 TCGA-L5-A8NS-01 6 129807652 129807652 C T LAMA2 Silent p.L2595L 0.13 TCGA-L5-A8NS-01 6 13287429 13287429 T A TBC1D7 Intron 0.34 TCGA-L5-A8NS-01 6 138794509 138794525 GGTGGGTCCCTGAGAGT - NHSL1 Frame_Shift_Del p.Y134Ffs*10 0.12 TCGA-L5-A8NS-01 6 150322398 150322398 T G RAET1K RNA 0.21 TCGA-L5-A8NS-01 6 152590290 152590290 T G SYNE1 Missense_Mutation p.K6235N 0.13 probably_damaging(0.997) TCGA-L5-A8NS-01 6 152804261 152804261 C T SYNE1 Missense_Mutation p.E437K 0.05 probably_damaging(0.971) TCGA-L5-A8NS-01 6 170844467 170844467 C T PSMB1 Silent p.V189V 0.14 TCGA-L5-A8NS-01 6 24564486 24564486 A T KIAA0319 Missense_Mutation p.V792D 0.12 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NS-01 6 26598649 26598649 G A ABT1 Missense_Mutation p.D199N 0.18 tolerated(0.23) benign(0.006) TCGA-L5-A8NS-01 6 29706476 29706476 C T HLA-F-AS1 RNA 0.21 TCGA-L5-A8NS-01 6 33359754 33359754 G C KIFC1 5'UTR 0.18 TCGA-L5-A8NS-01 6 38917247 38917247 G T DNAH8 Missense_Mutation p.G3833V 0.14 benign(0.055) TCGA-L5-A8NS-01 6 41060810 41060810 C G NFYA Missense_Mutation p.P292A 0.11 deleterious(0.05) possibly_damaging(0.613) TCGA-L5-A8NS-01 6 41309806 41309806 C T NCR2 Missense_Mutation p.A188V 0.12 deleterious(0.03) possibly_damaging(0.625) TCGA-L5-A8NS-01 6 41908238 41908238 C A CCND3 Missense_Mutation p.R95L 0.16 tolerated(0.11) benign(0.14) TCGA-L5-A8NS-01 6 43273446 43273446 C A CRIP3 3'UTR 0.12 TCGA-L5-A8NS-01 6 46107441 46107441 C T ENPP4 Silent p.L41L 0.10 TCGA-L5-A8NS-01 6 50813985 50813985 G T TFAP2B 3'UTR 0.30 TCGA-L5-A8NS-01 6 51503655 51503655 G A PKHD1 Missense_Mutation p.S3833F 0.26 tolerated(0.09) benign(0.025) TCGA-L5-A8NS-01 6 73111870 73111870 T A RIMS1 3'Flank 0.35 TCGA-L5-A8NS-01 6 80721267 80721267 T A TTK Splice_Site p.X243_splice 0.17 TCGA-L5-A8NS-01 7 100683000 100683000 C T MUC17 Missense_Mutation p.A2768V 0.35 unknown(0) TCGA-L5-A8NS-01 7 100781520 100781520 T C SERPINE1 3'UTR 0.19 TCGA-L5-A8NS-01 7 105210019 105210019 C T EFCAB10 Splice_Site p.X36_splice 0.27 TCGA-L5-A8NS-01 7 105664854 105664854 A C CDHR3 Missense_Mutation p.K702Q 0.08 deleterious(0.04) benign(0.169) TCGA-L5-A8NS-01 7 116435832 116435832 T A MET Missense_Mutation p.C1326S 0.29 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 7 121650873 121650873 C T PTPRZ1 Silent p.P591P 0.16 TCGA-L5-A8NS-01 7 128470943 128470943 C T FLNC Silent p.R84R 0.48 TCGA-L5-A8NS-01 7 128490861 128490861 G C FLNC Missense_Mutation p.E1801D 0.19 tolerated(0.09) benign(0.126) TCGA-L5-A8NS-01 7 134891942 134891942 A G WDR91 Missense_Mutation p.I175T 0.12 deleterious(0.01) benign(0.161) TCGA-L5-A8NS-01 7 19184798 19184798 T C FERD3L Missense_Mutation p.E63G 0.16 tolerated(0.25) benign(0.004) TCGA-L5-A8NS-01 7 2976748 2976780 CCATCTCGATCCTCATCTCGTCGTTCTTCTCCT - CARD11 In_Frame_Del p.E411_M421del 0.24 TCGA-L5-A8NS-01 7 30951715 30951715 C T AQP1 Missense_Mutation p.A64V 0.12 tolerated(1) probably_damaging(0.999) TCGA-L5-A8NS-01 7 32584374 32584374 C T AVL9 Nonsense_Mutation p.R95* 0.18 TCGA-L5-A8NS-01 7 37960276 37960276 A G EPDR1 5'UTR 0.10 TCGA-L5-A8NS-01 7 40127865 40127865 A C CDK13 Missense_Mutation p.N1057T 0.10 deleterious(0.01) benign(0.253) TCGA-L5-A8NS-01 7 48287988 48287988 T C ABCA13 Silent p.S604S 0.29 TCGA-L5-A8NS-01 7 6035236 6035236 G C PMS2 Missense_Mutation p.H278D 0.27 deleterious(0) possibly_damaging(0.897) TCGA-L5-A8NS-01 7 64292979 64292991 CAAAGCTTTTAAC - ZNF138 3'Flank 0.24 TCGA-L5-A8NS-01 7 65825200 65825200 C A TPST1 3'UTR 0.26 TCGA-L5-A8NS-01 7 71036303 71036303 C G WBSCR17 Silent p.V332V 0.07 TCGA-L5-A8NS-01 7 71252648 71252648 C A CALN1 3'UTR 0.14 TCGA-L5-A8NS-01 7 75191409 75191409 G C HIP1 Missense_Mutation p.F362L 0.14 tolerated(0.17) benign(0.013) TCGA-L5-A8NS-01 7 819591 819591 A G HEATR2 Silent p.E747E 0.05 TCGA-L5-A8NS-01 7 83590074 83590074 G T SEMA3A 3'UTR 0.29 TCGA-L5-A8NS-01 7 86556147 86556147 T C KIAA1324L Missense_Mutation p.K392R 0.13 tolerated(0.25) benign(0.024) TCGA-L5-A8NS-01 7 89912265 89912265 G C C7orf63 Missense_Mutation p.A478P 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-L5-A8NS-01 7 91625013 91625013 C G AKAP9 Missense_Mutation p.L277V 0.32 possibly_damaging(0.882) TCGA-L5-A8NS-01 7 91641760 91641760 G C AKAP9 Missense_Mutation p.Q1112H 0.19 probably_damaging(0.999) TCGA-L5-A8NS-01 7 91708688 91708688 A G AKAP9 Missense_Mutation p.N2414S 0.17 benign(0.014) TCGA-L5-A8NS-01 7 95616416 95616416 T C DYNC1I1 Silent p.D281D 0.16 TCGA-L5-A8NS-01 7 98515105 98515105 C G TRRAP Missense_Mutation p.L809V 0.12 probably_damaging(0.999) TCGA-L5-A8NS-01 7 99055937 99055937 G C ATP5J2 3'UTR 0.06 TCGA-L5-A8NS-01 7 99746558 99746558 C G LAMTOR4 5'UTR 0.07 TCGA-L5-A8NS-01 8 105502495 105502495 G T LRP12 3'UTR 0.15 TCGA-L5-A8NS-01 8 130789698 130789698 G A GSDMC Missense_Mutation p.R46C 0.09 tolerated(0.2) benign(0.042) TCGA-L5-A8NS-01 8 141669195 141669195 A G PTK2 3'UTR 0.12 TCGA-L5-A8NS-01 8 143961103 143961103 G A CYP11B1 Missense_Mutation p.R43W 0.18 deleterious(0) possibly_damaging(0.629) TCGA-L5-A8NS-01 8 16021651 16021651 A C MSR1 Missense_Mutation p.L247R 0.08 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 8 1650785 1650786 - A DLGAP2 3'UTR 0.54 TCGA-L5-A8NS-01 8 22473234 22473234 C T CCAR2 Nonsense_Mutation p.Q473* 0.54 TCGA-L5-A8NS-01 8 37756659 37756659 C G RAB11FIP1 Missense_Mutation p.D101H 0.38 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 8 51617190 51617190 T C SNTG1 Missense_Mutation p.C357R 0.28 deleterious(0.01) benign(0.156) TCGA-L5-A8NS-01 8 55049207 55049207 G A MRPL15 Missense_Mutation p.G82E 0.29 tolerated(0.2) benign(0.098) TCGA-L5-A8NS-01 8 65494189 65494189 C G BHLHE22 Missense_Mutation p.S281C 0.29 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NS-01 8 70571877 70571877 A C SULF1 3'UTR 0.33 TCGA-L5-A8NS-01 8 72942163 72942163 A T TRPA1 Missense_Mutation p.H970Q 0.33 tolerated(0.07) possibly_damaging(0.649) TCGA-L5-A8NS-01 8 77616662 77616662 G C ZFHX4 Missense_Mutation p.E113D 0.15 benign(0.388) TCGA-L5-A8NS-01 8 77765554 77765554 C T ZFHX4 Missense_Mutation p.R2133W 0.06 probably_damaging(0.998) TCGA-L5-A8NS-01 8 85441593 85441593 A T RALYL Nonsense_Mutation p.K26* 0.08 TCGA-L5-A8NS-01 8 91635896 91635896 T C TMEM64 3'UTR 0.18 TCGA-L5-A8NS-01 8 94745613 94745613 A C RBM12B 3'UTR 0.06 TCGA-L5-A8NS-01 9 100840540 100840540 G A NANS Missense_Mutation p.V172M 0.35 tolerated(0.31) benign(0.199) TCGA-L5-A8NS-01 9 113563101 113563101 G A MUSK Missense_Mutation p.V815M 0.17 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 9 114132855 114132855 G C KIAA0368 Missense_Mutation p.Q1790E 0.09 tolerated(1) benign(0.007) TCGA-L5-A8NS-01 9 114480480 114480480 G A C9orf84 Silent p.S676S 0.09 TCGA-L5-A8NS-01 9 115805716 115805716 T C ZFP37 Silent p.Q394Q 0.07 TCGA-L5-A8NS-01 9 116050503 116050503 G A PRPF4 Silent p.R328R 0.23 TCGA-L5-A8NS-01 9 116153150 116153150 T C ALAD Missense_Mutation p.R109G 0.09 deleterious(0.02) possibly_damaging(0.799) TCGA-L5-A8NS-01 9 117064372 117064372 G A COL27A1 Missense_Mutation p.G1619E 0.12 unknown(0) TCGA-L5-A8NS-01 9 125289266 125289266 G C OR1N1 Missense_Mutation p.L103V 0.11 tolerated(0.07) benign(0.283) TCGA-L5-A8NS-01 9 125391809 125391809 C T OR1B1 Missense_Mutation p.M2I 0.10 deleterious(0.01) possibly_damaging(0.878) TCGA-L5-A8NS-01 9 127642160 127642160 A G GOLGA1 3'UTR 0.18 TCGA-L5-A8NS-01 9 130485567 130485567 G A TTC16 Missense_Mutation p.R276H 0.29 deleterious(0.02) benign(0.133) TCGA-L5-A8NS-01 9 131046829 131046829 A T SWI5 Missense_Mutation p.E156V 0.28 deleterious(0.01) possibly_damaging(0.861) TCGA-L5-A8NS-01 9 138378543 138378543 G A PPP1R26 Silent p.T729T 0.50 TCGA-L5-A8NS-01 9 140127048 140127048 T G SLC34A3 Missense_Mutation p.L66R 0.18 deleterious(0) probably_damaging(0.963) TCGA-L5-A8NS-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NS-01 9 35697465 35697465 C G TLN1 3'UTR 0.24 TCGA-L5-A8NS-01 9 37511672 37511672 C G FBXO10 3'UTR 0.30 TCGA-L5-A8NS-01 9 5968554 5968554 G C KIAA2026 Missense_Mutation p.I559M 0.12 deleterious(0.01) possibly_damaging(0.487) TCGA-L5-A8NS-01 9 5968562 5968562 G A KIAA2026 Missense_Mutation p.H557Y 0.12 tolerated(0.8) benign(0.003) TCGA-L5-A8NS-01 9 74360015 74360015 G C TMEM2 Missense_Mutation p.A318G 0.08 tolerated(0.57) benign(0.101) TCGA-L5-A8NS-01 9 75531955 75531955 C T ALDH1A1 Missense_Mutation p.A306T 0.13 deleterious(0) possibly_damaging(0.684) TCGA-L5-A8NS-01 9 79229431 79229431 A G PRUNE2 3'UTR 0.20 TCGA-L5-A8NS-01 9 79322773 79322773 C G PRUNE2 Missense_Mutation p.E1473Q 0.10 deleterious(0.04) possibly_damaging(0.489) TCGA-L5-A8NS-01 9 79634684 79634684 C T FOXB2 Silent p.D38D 0.20 TCGA-L5-A8NS-01 9 79890564 79890564 C T VPS13A Missense_Mutation p.P888L 0.22 tolerated(0.09) benign(0.028) TCGA-L5-A8NS-01 9 79917908 79917908 G T VPS13A Missense_Mutation p.R1297L 0.20 deleterious(0) probably_damaging(1) TCGA-L5-A8NS-01 9 86593149 86593149 C T HNRNPK Missense_Mutation p.E7K 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.615) TCGA-L5-A8NS-01 9 87285561 87285561 G C NTRK2 5'UTR 0.29 TCGA-L5-A8NS-01 X 108786756 108786756 T C NXT2 3'UTR 0.11 TCGA-L5-A8NS-01 X 135572368 135572368 G A BRS3 Missense_Mutation p.V171I 0.07 tolerated(1) benign(0.01) TCGA-L5-A8NS-01 X 138678710 138678710 T C MCF2 Missense_Mutation p.K835E 0.25 deleterious(0) benign(0.103) TCGA-L5-A8NS-01 X 152616209 152616209 C A ZNF275 3'UTR 0.22 TCGA-L5-A8NS-01 X 153037063 153037063 C A PLXNB3 Missense_Mutation p.P847T 0.47 tolerated(0.51) benign(0.037) TCGA-L5-A8NS-01 X 153295732 153295732 C G MECP2 3'UTR 0.25 TCGA-L5-A8NS-01 X 154255153 154255153 T A FUNDC2 5'UTR 0.27 TCGA-L5-A8NS-01 X 2990157 2990157 A C ARSF Silent p.L34L 0.30 TCGA-L5-A8NS-01 X 41093315 41093315 A T USP9X 3'UTR 0.28 TCGA-L5-A8NS-01 X 47058627 47058627 G A UBA1 Missense_Mutation p.A66T 0.62 deleterious(0.02) benign(0.162) TCGA-L5-A8NS-01 X 47775831 47775831 C G ZNF81 Missense_Mutation p.H596D 0.60 tolerated(0.3) possibly_damaging(0.881) TCGA-L5-A8NS-01 X 72434458 72434458 G T NAP1L2 5'UTR 0.81 TCGA-L5-A8NS-01 X 73641366 73641366 G T SLC16A2 5'UTR 0.42 TCGA-L5-A8NS-01 X 78011852 78011852 T A LPAR4 3'UTR 0.75 TCGA-L5-A8NS-01 X 90691007 90691007 C G PABPC5 Missense_Mutation p.S144C 0.68 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NT-01 10 100503680 100503680 G A HPSE2 Silent p.S248S 0.33 TCGA-L5-A8NT-01 10 105148861 105148861 A G USMG5 3'UTR 0.24 TCGA-L5-A8NT-01 10 12940592 12940592 G T CCDC3 Missense_Mutation p.R213S 0.18 deleterious_low_confidence(0.01) probably_damaging(0.994) TCGA-L5-A8NT-01 10 24886431 24886431 C A ARHGAP21 Missense_Mutation p.K1093N 0.21 deleterious(0.05) possibly_damaging(0.885) TCGA-L5-A8NT-01 10 26986739 26986739 G T PDSS1 Silent p.G33G 0.29 TCGA-L5-A8NT-01 10 26986740 26986740 C T PDSS1 Missense_Mutation p.P34S 0.31 tolerated_low_confidence(0.19) benign(0.005) TCGA-L5-A8NT-01 10 51769385 51769385 T C AGAP6 Silent p.I500I 0.23 TCGA-L5-A8NT-01 11 134162099 134162099 C A GLB1L3 Missense_Mutation p.T268N 0.55 deleterious(0) possibly_damaging(0.449) TCGA-L5-A8NT-01 11 14880604 14880604 G T PDE3B Missense_Mutation p.D846Y 0.35 deleterious(0) probably_damaging(1) TCGA-L5-A8NT-01 11 31436406 31436406 G T DNAJC24 Nonsense_Mutation p.E54* 0.30 TCGA-L5-A8NT-01 11 31616371 31616371 G A ELP4 Missense_Mutation p.V146I 0.30 tolerated(0.33) benign(0.005) TCGA-L5-A8NT-01 11 62159024 62159024 G A ASRGL1 Missense_Mutation p.G214E 0.64 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NT-01 11 6281062 6281062 G A CCKBR 5'UTR 0.20 TCGA-L5-A8NT-01 11 64060653 64060653 G A KCNK4 Missense_Mutation p.D55N 0.46 tolerated(0.27) benign(0.062) TCGA-L5-A8NT-01 11 70028614 70028614 G T ANO1 Missense_Mutation p.V804L 0.63 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NT-01 11 9466833 9466833 A G IPO7 3'UTR 0.41 TCGA-L5-A8NT-01 12 110034518 110034518 C T MVK 3'UTR 0.11 TCGA-L5-A8NT-01 12 114356243 114356243 C T RBM19 Missense_Mutation p.V799M 0.14 tolerated(0.06) benign(0.327) TCGA-L5-A8NT-01 12 120114351 120114351 G A PRKAB1 Missense_Mutation p.S181N 0.33 tolerated(0.17) possibly_damaging(0.751) TCGA-L5-A8NT-01 12 124337760 124337760 C T DNAH10 Missense_Mutation p.A1982V 0.34 probably_damaging(0.988) TCGA-L5-A8NT-01 12 133438075 133438075 G A CHFR Silent p.P255P 0.41 TCGA-L5-A8NT-01 12 1993438 1993438 C T CACNA2D4 Missense_Mutation p.R441H 0.06 tolerated(0.13) benign(0.013) TCGA-L5-A8NT-01 12 23998970 23998970 A G SOX5 Missense_Mutation p.V143A 0.48 tolerated(0.17) probably_damaging(0.986) TCGA-L5-A8NT-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.29 deleterious(0) benign(0.361) TCGA-L5-A8NT-01 12 63963039 63963040 AT - DPY19L2 Frame_Shift_Del p.Y697Cfs*12 0.23 TCGA-L5-A8NT-01 12 75905345 75905345 T - KRR1 Frame_Shift_Del p.G12Afs*61 0.11 TCGA-L5-A8NT-01 12 96927722 96927723 - CTG C12orf55 In_Frame_Ins p.A505dup 0.24 TCGA-L5-A8NT-01 13 112722424 112722424 C T SOX1 Missense_Mutation p.A151V 0.44 tolerated(0.17) benign(0.137) TCGA-L5-A8NT-01 13 25744896 25744896 C T AMER2 Missense_Mutation p.A288T 0.53 tolerated(0.51) benign(0.009) TCGA-L5-A8NT-01 13 36049601 36049601 C T MAB21L1 Silent p.A225A 0.62 TCGA-L5-A8NT-01 13 52661570 52661570 G A NEK5 Silent p.A432A 0.49 TCGA-L5-A8NT-01 14 23394147 23394147 G A PRMT5 Missense_Mutation p.P294S 0.19 tolerated(0.74) benign(0.223) TCGA-L5-A8NT-01 14 23568247 23568247 C T C14orf119 3'UTR 0.29 TCGA-L5-A8NT-01 14 29237109 29237109 C T FOXG1 Silent p.Y208Y 0.40 TCGA-L5-A8NT-01 14 31204907 31204907 A G SCFD1 3'UTR 0.19 TCGA-L5-A8NT-01 14 96761355 96761367 CCATGCCATTAAC - ATG2B Frame_Shift_Del p.V1786Kfs*46 0.18 TCGA-L5-A8NT-01 15 100340186 100340186 C A DNM1P46 RNA 0.47 TCGA-L5-A8NT-01 15 83933212 83933212 T G BNC1 Missense_Mutation p.Y264S 0.45 tolerated(0.3) benign(0.012) TCGA-L5-A8NT-01 16 11578898 11578898 A GT CTD-3088G3.8 Frame_Shift_Ins p.I647Nfs*21 0.42 TCGA-L5-A8NT-01 16 32265836 32265836 C T TP53TG3D Intron 0.35 TCGA-L5-A8NT-01 16 49524565 49524565 G A ZNF423 3'UTR 0.14 TCGA-L5-A8NT-01 16 50745944 50745944 C T NOD2 Missense_Mutation p.R708C 0.47 tolerated(0.07) possibly_damaging(0.776) TCGA-L5-A8NT-01 16 53525614 53525614 A C AKTIP 3'UTR 0.05 TCGA-L5-A8NT-01 16 57559951 57559951 G A CCDC102A Missense_Mutation p.P225L 0.25 tolerated(0.69) benign(0) TCGA-L5-A8NT-01 16 67858589 67858589 G T TSNAXIP1 Missense_Mutation p.E141D 0.23 deleterious(0.02) benign(0.163) TCGA-L5-A8NT-01 16 84216924 84216924 A G TAF1C Silent p.L112L 0.37 TCGA-L5-A8NT-01 16 84779188 84779188 C T USP10 Silent p.P367P 0.47 TCGA-L5-A8NT-01 17 21205510 21205510 G A MAP2K3 Missense_Mutation p.R152Q 0.26 deleterious(0.02) benign(0.008) TCGA-L5-A8NT-01 17 31340821 31340821 C T ASIC2 3'UTR 0.37 TCGA-L5-A8NT-01 17 33464163 33464163 G A NLE1 Missense_Mutation p.R229W 0.26 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NT-01 17 38153633 38153634 - GTAA PSMD3 Frame_Shift_Ins 0.12 TCGA-L5-A8NT-01 17 41004727 41004727 C T AOC3 Missense_Mutation p.A456V 0.40 tolerated(0.73) benign(0.004) TCGA-L5-A8NT-01 17 45056320 45056320 G A RPRML Silent p.G18G 0.46 TCGA-L5-A8NT-01 17 57936913 57936914 GG C TUBD1 3'UTR 0.43 TCGA-L5-A8NT-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.56 deleterious(0) probably_damaging(1) TCGA-L5-A8NT-01 17 79210792 79210792 G A ENTHD2 Silent p.H67H 0.36 TCGA-L5-A8NT-01 17 9939846 9939846 C T GAS7 Intron 0.45 TCGA-L5-A8NT-01 18 672794 672794 G A ENOSF1 3'Flank 0.70 TCGA-L5-A8NT-01 18 76753955 76753955 C T SALL3 Missense_Mutation p.S655L 0.50 deleterious(0) possibly_damaging(0.777) TCGA-L5-A8NT-01 19 10823791 10823791 C T QTRT1 Intron 0.30 TCGA-L5-A8NT-01 19 40322534 40322534 C T DYRK1B 5'UTR 0.34 TCGA-L5-A8NT-01 19 51274368 51274368 G A GPR32 Missense_Mutation p.A171T 0.38 tolerated(0.07) benign(0.212) TCGA-L5-A8NT-01 19 54105311 54105311 A C CTB-167G5.5 Missense_Mutation p.C49G 0.35 deleterious(0) benign(0) TCGA-L5-A8NT-01 19 55795539 55795539 C T BRSK1 5'UTR 0.12 TCGA-L5-A8NT-01 19 56011964 56011964 C T SSC5D Missense_Mutation p.R804W 0.30 probably_damaging(1) TCGA-L5-A8NT-01 1 11015170 11015171 - GAAC C1orf127 Frame_Shift_Ins p.Y285Ffs*4 0.17 TCGA-L5-A8NT-01 1 12921404 12921404 C T PRAMEF2 Missense_Mutation p.R399C 0.15 tolerated(0.22) benign(0.001) TCGA-L5-A8NT-01 1 151506465 151506465 G A CGN Silent p.R919R 0.08 TCGA-L5-A8NT-01 1 152279935 152279935 G T FLG Missense_Mutation p.S2476Y 0.41 benign(0.121) TCGA-L5-A8NT-01 1 152327619 152327619 G A FLG2 Silent p.Y881Y 0.38 TCGA-L5-A8NT-01 1 152538409 152538409 G T LCE3E Nonsense_Mutation p.C92* 0.23 TCGA-L5-A8NT-01 1 181750615 181750615 C A CACNA1E Missense_Mutation p.P1774T 0.28 deleterious(0) possibly_damaging(0.641) TCGA-L5-A8NT-01 1 18661448 18661448 G A IGSF21 Missense_Mutation p.R123H 0.15 deleterious(0) probably_damaging(0.966) TCGA-L5-A8NT-01 1 217856615 217856615 C T SPATA17 Nonsense_Mutation p.R103* 0.13 TCGA-L5-A8NT-01 1 228346575 228346575 G A GJC2 Silent p.S372S 0.50 TCGA-L5-A8NT-01 1 243801021 243801021 C T AKT3 Silent p.L151L 0.20 TCGA-L5-A8NT-01 1 3329152 3329152 C T PRDM16 Silent p.S797S 0.42 TCGA-L5-A8NT-01 20 26063533 26063533 G A FAM182A RNA 0.21 TCGA-L5-A8NT-01 20 37531431 37531431 C T PPP1R16B Missense_Mutation p.T231I 0.33 deleterious(0) probably_damaging(1) TCGA-L5-A8NT-01 20 62522321 62522321 G A TPD52L2 3'UTR 0.54 TCGA-L5-A8NT-01 21 14778723 14778723 G T MIR3156-3 RNA 0.16 TCGA-L5-A8NT-01 21 22849776 22849776 G A NCAM2 Silent p.K687K 0.08 TCGA-L5-A8NT-01 21 42752006 42752006 G A MX2 Missense_Mutation p.G169R 0.41 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NT-01 21 47574184 47574184 G A FTCD Silent p.D39D 0.19 TCGA-L5-A8NT-01 22 30975882 30975882 C A PES1 Missense_Mutation p.A404S 0.42 tolerated(0.06) probably_damaging(0.976) TCGA-L5-A8NT-01 22 37769599 37769599 C T ELFN2 Missense_Mutation p.G659D 0.62 tolerated(0.51) benign(0.045) TCGA-L5-A8NT-01 22 38379482 38379482 C T SOX10 Missense_Mutation p.V104I 0.27 deleterious(0.03) possibly_damaging(0.614) TCGA-L5-A8NT-01 22 41755031 41755031 T C ZC3H7B 3'UTR 0.12 TCGA-L5-A8NT-01 22 50588027 50588027 G A MOV10L1 Intron 0.47 TCGA-L5-A8NT-01 2 145147113 145147113 C G ZEB2 Missense_Mutation p.E1184Q 0.14 tolerated_low_confidence(0.09) possibly_damaging(0.815) TCGA-L5-A8NT-01 2 152325052 152325052 C T RIF1 Missense_Mutation p.S2271L 0.28 deleterious(0) possibly_damaging(0.507) TCGA-L5-A8NT-01 2 200213513 200213513 G A SATB2 Missense_Mutation p.P362S 0.50 tolerated(1) benign(0.007) TCGA-L5-A8NT-01 2 219303392 219303392 C T VIL1 Silent p.S724S 0.33 TCGA-L5-A8NT-01 2 241405643 241405643 C T GPC1 Missense_Mutation p.P538L 0.17 tolerated(0.47) benign(0) TCGA-L5-A8NT-01 2 242815165 242815165 C T CXXC11 Silent p.G486G 0.21 TCGA-L5-A8NT-01 2 45172154 45172154 C T SIX3 3'UTR 0.49 TCGA-L5-A8NT-01 2 75094808 75094808 G A HK2 Missense_Mutation p.R91H 0.13 deleterious(0.02) benign(0.008) TCGA-L5-A8NT-01 2 96690074 96690074 G A GPAT2 Missense_Mutation p.R561W 0.24 deleterious(0.01) possibly_damaging(0.835) TCGA-L5-A8NT-01 3 100119483 100119483 G C TOMM70A Missense_Mutation p.A104G 0.28 tolerated(0.37) benign(0) TCGA-L5-A8NT-01 3 10290963 10290964 - GG TATDN2 Frame_Shift_Ins p.E28Gfs*29 0.09 TCGA-L5-A8NT-01 3 183381293 183381293 G A KLHL24 Missense_Mutation p.R323Q 0.35 deleterious(0.05) benign(0.055) TCGA-L5-A8NT-01 3 193082019 193082019 G A ATP13A5 Silent p.V38V 0.31 TCGA-L5-A8NT-01 3 24009343 24009343 G C NR1D2 Missense_Mutation p.E458Q 0.34 deleterious(0.01) possibly_damaging(0.737) TCGA-L5-A8NT-01 3 42950359 42950359 C T ZNF662 Missense_Mutation p.R97W 0.33 tolerated(0.47) benign(0.002) TCGA-L5-A8NT-01 3 44966774 44966774 T G ZDHHC3 3'UTR 0.37 TCGA-L5-A8NT-01 3 49690024 49690024 G T BSN Missense_Mutation p.R1012L 0.33 unknown(0) TCGA-L5-A8NT-01 3 74548897 74548897 G A CNTN3 Missense_Mutation p.P32L 0.37 deleterious(0) probably_damaging(1) TCGA-L5-A8NT-01 3 78647116 78647117 - G ROBO1 3'UTR 0.23 TCGA-L5-A8NT-01 3 95374393 95374393 G C MTHFD2P1 RNA 0.27 TCGA-L5-A8NT-01 4 103718319 103718319 A T UBE2D3 3'Flank 0.45 TCGA-L5-A8NT-01 4 106816881 106816881 G T NPNT Splice_Site p.X24_splice 0.54 TCGA-L5-A8NT-01 4 188924760 188924760 C T ZFP42 Missense_Mutation p.R267C 0.45 tolerated(0.05) benign(0.189) TCGA-L5-A8NT-01 4 47900808 47900808 C T NFXL1 Missense_Mutation p.R352K 0.57 deleterious(0.03) benign(0.065) TCGA-L5-A8NT-01 5 115782665 115782665 C T SEMA6A Missense_Mutation p.G913R 0.43 tolerated(0.16) benign(0.285) TCGA-L5-A8NT-01 5 164028110 164028110 G A CTC-340A15.2 RNA 0.49 TCGA-L5-A8NT-01 5 38258922 38258922 G A EGFLAM Silent p.A22A 0.13 TCGA-L5-A8NT-01 5 38933248 38933248 C T OSMR Missense_Mutation p.P881L 0.71 deleterious(0.03) possibly_damaging(0.642) TCGA-L5-A8NT-01 5 5242188 5242188 C A ADAMTS16 Missense_Mutation p.P849Q 0.71 tolerated(0.08) possibly_damaging(0.87) TCGA-L5-A8NT-01 6 152576221 152576221 G T SYNE1 Missense_Mutation p.L6422I 0.22 probably_damaging(0.996) TCGA-L5-A8NT-01 6 17629214 17629214 T G NUP153 Missense_Mutation p.K1072N 0.39 deleterious(0.02) probably_damaging(0.937) TCGA-L5-A8NT-01 6 26412944 26412944 C T BTN3A1 Intron 0.45 TCGA-L5-A8NT-01 6 31670613 31670613 A T ABHD16A Intron 0.29 TCGA-L5-A8NT-01 6 31868356 31868357 - GT ZBTB12 Frame_Shift_Ins p.L243Tfs*15 0.33 TCGA-L5-A8NT-01 7 111407142 111407142 C A DOCK4 Missense_Mutation p.K1278N 0.17 deleterious(0) benign(0.098) TCGA-L5-A8NT-01 7 127253852 127253852 G A PAX4 Missense_Mutation p.R166W 0.25 deleterious(0) probably_damaging(1) TCGA-L5-A8NT-01 7 143054514 143054514 C T FAM131B Missense_Mutation p.V157I 0.27 tolerated(0.12) probably_damaging(0.96) TCGA-L5-A8NT-01 7 88964965 88964965 A C ZNF804B Missense_Mutation p.K890T 0.29 tolerated(0.08) benign(0.034) TCGA-L5-A8NT-01 7 93519535 93519535 C T TFPI2 Missense_Mutation p.R62H 0.52 tolerated(0.12) benign(0.239) TCGA-L5-A8NT-01 8 106813340 106813340 G T ZFPM2 Missense_Mutation p.A344S 0.28 tolerated(0.19) probably_damaging(0.996) TCGA-L5-A8NT-01 8 132051794 132051794 G A ADCY8 Silent p.L262L 0.23 TCGA-L5-A8NT-01 8 140922425 140922425 T C TRAPPC9 Missense_Mutation p.E1075G 0.14 tolerated(0.09) probably_damaging(0.979) TCGA-L5-A8NT-01 8 143853108 143853109 CT - LYNX1 Intron 0.32 TCGA-L5-A8NT-01 8 59059539 59059539 C T FAM110B Silent p.V250V 0.27 TCGA-L5-A8NT-01 8 67803140 67803140 C T MCMDC2 Missense_Mutation p.R372C 0.41 deleterious(0.01) benign(0.002) TCGA-L5-A8NT-01 8 73480108 73480108 G T KCNB2 Nonsense_Mutation p.E47* 0.32 TCGA-L5-A8NT-01 8 85095870 85095871 - T RALYL 5'Flank 0.24 TCGA-L5-A8NT-01 8 98155409 98155409 T C CPQ Nonstop_Mutation p.*473Qext*3 0.30 TCGA-L5-A8NT-01 9 101304292 101304292 C T GABBR2 Missense_Mutation p.D165N 0.29 tolerated(0.3) benign(0.187) TCGA-L5-A8NT-01 9 107289070 107289070 A G OR13C4 Missense_Mutation p.Y141H 0.35 deleterious(0.01) probably_damaging(0.981) TCGA-L5-A8NT-01 9 116359531 116359531 C T RGS3 3'UTR 0.35 TCGA-L5-A8NT-01 9 129851324 129851324 C T ANGPTL2 Missense_Mutation p.R459Q 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A8NT-01 9 131670056 131670056 G A LRRC8A Missense_Mutation p.V205M 0.25 tolerated(0.25) probably_damaging(0.981) TCGA-L5-A8NT-01 9 139903009 139903009 G A ABCA2 Silent p.S2378S 0.09 TCGA-L5-A8NT-01 9 35561301 35561301 C T RUSC2 Silent p.P1491P 0.32 TCGA-L5-A8NT-01 X 119738696 119738696 G A MCTS1 5'UTR 0.68 TCGA-L5-A8NT-01 X 140995192 140995192 G C MAGEC1 Missense_Mutation p.E668Q 0.33 deleterious_low_confidence(0) benign(0.403) TCGA-L5-A8NT-01 X 37027911 37027911 G A FAM47C Silent p.P476P 0.68 TCGA-L5-A8NT-01 X 48755853 48755853 G A PQBP1 Missense_Mutation p.E21K 0.50 tolerated(0.05) possibly_damaging(0.81) TCGA-L5-A8NT-01 X 50659106 50659106 C A BMP15 Silent p.S226S 0.60 TCGA-L5-A8NU-01 10 106074073 106074073 G T ITPRIP 3'UTR 0.14 TCGA-L5-A8NU-01 10 117154258 117154258 C A ATRNL1 Missense_Mutation p.Q1089K 0.06 deleterious(0.01) possibly_damaging(0.527) TCGA-L5-A8NU-01 10 129875962 129875962 G A PTPRE Missense_Mutation p.E603K 0.11 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A8NU-01 10 49367277 49367277 T C FRMPD2 Intron 0.15 TCGA-L5-A8NU-01 10 50375962 50375962 G T C10orf128 Missense_Mutation p.A30D 0.20 tolerated(0.32) benign(0.137) TCGA-L5-A8NU-01 11 132288820 132288820 C G OPCML 3'UTR 0.13 TCGA-L5-A8NU-01 11 36598366 36598366 T - RAG1 3'UTR 0.16 TCGA-L5-A8NU-01 11 64510893 64510893 C A RASGRP2 Intron 0.10 TCGA-L5-A8NU-01 12 106729445 106729445 A G TCP11L2 Missense_Mutation p.I267M 0.10 deleterious(0.01) probably_damaging(0.926) TCGA-L5-A8NU-01 12 124359881 124359881 G A DNAH10 Missense_Mutation p.R2563Q 0.07 benign(0.206) TCGA-L5-A8NU-01 12 131439027 131439027 G A GPR133 Missense_Mutation p.R6Q 0.14 tolerated_low_confidence(0.4) benign(0.019) TCGA-L5-A8NU-01 12 31585991 31585991 A T DENND5B Intron 0.10 TCGA-L5-A8NU-01 12 73012754 73012754 C T TRHDE Missense_Mutation p.A757V 0.09 deleterious(0) benign(0.341) TCGA-L5-A8NU-01 13 20216292 20216292 C G MPHOSPH8 Missense_Mutation p.T84R 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-L5-A8NU-01 13 35751218 35751218 G A NBEA Missense_Mutation p.R1547H 0.14 tolerated(0.09) probably_damaging(0.991) TCGA-L5-A8NU-01 14 101526154 101526154 T G MIR154 RNA 0.14 TCGA-L5-A8NU-01 14 35468837 35468837 A T SRP54 Missense_Mutation p.Q51L 0.10 deleterious(0.04) benign(0.08) TCGA-L5-A8NU-01 15 25427435 25427435 C T SNORD115-6 3'Flank 0.11 TCGA-L5-A8NU-01 15 28421704 28421704 C T HERC2 Missense_Mutation p.G3186S 0.14 probably_damaging(1) TCGA-L5-A8NU-01 15 29415678 29415678 T C FAM189A1 Missense_Mutation p.K495R 0.11 tolerated(0.4) possibly_damaging(0.636) TCGA-L5-A8NU-01 16 31368637 31368637 C T ITGAX Missense_Mutation p.L128F 0.18 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NU-01 17 40557269 40557269 C T PTRF Silent p.S203S 0.33 TCGA-L5-A8NU-01 17 44952592 44952592 C T WNT9B Missense_Mutation p.R154W 0.15 deleterious(0) probably_damaging(0.989) TCGA-L5-A8NU-01 17 78188874 78188874 G A SGSH Missense_Mutation p.R105W 0.12 deleterious(0.02) possibly_damaging(0.846) TCGA-L5-A8NU-01 18 28916468 28916468 G A DSG1 Missense_Mutation p.R386H 0.08 tolerated(0.55) benign(0.011) TCGA-L5-A8NU-01 18 58038662 58038662 T C MC4R Silent p.Q307Q 0.22 TCGA-L5-A8NU-01 18 71803013 71803013 G T FBXO15 Missense_Mutation p.H106N 0.18 deleterious(0.05) possibly_damaging(0.877) TCGA-L5-A8NU-01 18 8819009 8819009 C G SOGA2 Missense_Mutation p.Q970E 0.16 tolerated(0.22) benign(0.209) TCGA-L5-A8NU-01 19 12061137 12061137 C T ZNF700 3'UTR 0.14 TCGA-L5-A8NU-01 19 44661481 44661481 C T ZNF234 Missense_Mutation p.R438C 0.13 deleterious(0.03) probably_damaging(0.932) TCGA-L5-A8NU-01 19 48699110 48699110 G A C19orf68 Missense_Mutation p.V597M 0.20 tolerated_low_confidence(0.24) benign(0.003) TCGA-L5-A8NU-01 19 537079 537079 C T CDC34 Silent p.D143D 0.13 TCGA-L5-A8NU-01 19 53912892 53912892 C T ZNF765 3'UTR 0.05 TCGA-L5-A8NU-01 19 58452307 58452307 G A ZNF256 Silent p.N623N 0.14 TCGA-L5-A8NU-01 19 9015384 9015384 A C MUC16 Missense_Mutation p.L12735R 0.16 probably_damaging(0.956) TCGA-L5-A8NU-01 1 11561238 11561238 C A PTCHD2 Silent p.T63T 0.20 TCGA-L5-A8NU-01 1 12942190 12942190 T C PRAMEF4 Silent p.E120E 0.07 TCGA-L5-A8NU-01 1 156130700 156130700 C T SEMA4A Silent p.D230D 0.15 TCGA-L5-A8NU-01 1 190424068 190424068 C G BRINP3 Intron 0.14 TCGA-L5-A8NU-01 1 215256745 215256745 C T KCNK2 Missense_Mutation p.S6L 0.09 deleterious_low_confidence(0.01) benign(0.001) TCGA-L5-A8NU-01 1 6211155 6211155 C T CHD5 Missense_Mutation p.V311M 0.22 tolerated(0.15) benign(0.042) TCGA-L5-A8NU-01 1 77093194 77093194 C T ST6GALNAC3 Silent p.D227D 0.15 TCGA-L5-A8NU-01 1 90178841 90178841 G C LRRC8C Missense_Mutation p.A238P 0.14 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NU-01 21 38114049 38114049 C T SIM2 Silent p.Y294Y 0.06 TCGA-L5-A8NU-01 22 32588920 32588920 C T RFPL2 Silent p.L175L 0.12 TCGA-L5-A8NU-01 22 39222643 39222643 G A NPTXR Silent p.T320T 0.07 TCGA-L5-A8NU-01 2 122493308 122493310 GTT - NIFK In_Frame_Del p.Q41del 0.14 TCGA-L5-A8NU-01 2 138376070 138376070 G A THSD7B Missense_Mutation p.C1228Y 0.16 deleterious(0) unknown(0) TCGA-L5-A8NU-01 2 220111885 220111885 C T STK16 Silent p.F119F 0.08 TCGA-L5-A8NU-01 2 232373919 232373919 C T LINC00471 RNA 0.11 TCGA-L5-A8NU-01 2 33468795 33468795 A T LTBP1 Missense_Mutation p.Y648F 0.13 deleterious(0.04) benign(0.25) TCGA-L5-A8NU-01 2 97751910 97751910 G A FAHD2B Missense_Mutation p.A163V 0.15 tolerated(0.19) probably_damaging(0.951) TCGA-L5-A8NU-01 2 99172218 99172218 C A INPP4A Nonsense_Mutation p.S595* 0.13 TCGA-L5-A8NU-01 3 28357823 28357823 G C CMC1 Splice_Site p.X37_splice 0.15 TCGA-L5-A8NU-01 3 39149181 39149181 C T GORASP1 5'UTR 0.16 TCGA-L5-A8NU-01 3 50294505 50294505 G A GNAI2 Missense_Mutation p.C287Y 0.24 tolerated(0.31) probably_damaging(0.989) TCGA-L5-A8NU-01 3 78647060 78647060 A T ROBO1 3'UTR 0.10 TCGA-L5-A8NU-01 4 144354697 144354697 G A GAB1 Missense_Mutation p.A141T 0.22 tolerated(0.67) benign(0.003) TCGA-L5-A8NU-01 4 156135424 156135424 C G NPY2R Silent p.T111T 0.12 TCGA-L5-A8NU-01 4 177061048 177061048 A T WDR17 Silent p.G479G 0.11 TCGA-L5-A8NU-01 4 3244811 3244811 G A HTT 3'UTR 0.11 TCGA-L5-A8NU-01 4 5696066 5696066 C T EVC2 Missense_Mutation p.R149H 0.08 tolerated(0.43) benign(0) TCGA-L5-A8NU-01 4 89319299 89319299 G A HERC6 Missense_Mutation p.V344M 0.21 tolerated(0.13) possibly_damaging(0.584) TCGA-L5-A8NU-01 4 96762049 96762049 C A PDHA2 Missense_Mutation p.L250I 0.22 tolerated(0.66) benign(0.122) TCGA-L5-A8NU-01 5 133747417 133747417 G A CDKN2AIPNL Silent p.F43F 0.19 TCGA-L5-A8NU-01 5 140502330 140502330 C A PCDHB4 Silent p.V250V 0.17 TCGA-L5-A8NU-01 5 179564942 179564942 C T RASGEF1C Silent p.A37A 0.25 TCGA-L5-A8NU-01 5 31299614 31299614 G C CDH6 Missense_Mutation p.R229S 0.22 deleterious(0) benign(0.075) TCGA-L5-A8NU-01 6 117127659 117127659 G A GPRC6A Silent p.L403L 0.11 TCGA-L5-A8NU-01 6 18222686 18222686 T C KDM1B 3'UTR 0.05 TCGA-L5-A8NU-01 6 28134854 28134854 A C ZNF192P1 RNA 0.16 TCGA-L5-A8NU-01 7 104702724 104702724 C T KMT2E Missense_Mutation p.A62V 0.08 deleterious(0) possibly_damaging(0.499) TCGA-L5-A8NU-01 7 117501265 117501265 G A CTTNBP2 Missense_Mutation p.R63W 0.28 deleterious(0) probably_damaging(0.956) TCGA-L5-A8NU-01 7 136700565 136700565 A G CHRM2 Missense_Mutation p.E318G 0.16 tolerated(0.33) benign(0.004) TCGA-L5-A8NU-01 7 150647326 150647326 G A KCNH2 Silent p.L776L 0.12 TCGA-L5-A8NU-01 7 1887223 1887223 G A AC110781.3 Silent p.P156P 0.09 TCGA-L5-A8NU-01 7 26233231 26233231 C T HNRNPA2B1 Missense_Mutation p.G281R 0.08 tolerated(0.51) benign(0.009) TCGA-L5-A8NU-01 7 28450121 28450121 G A CREB5 5'Flank 0.17 TCGA-L5-A8NU-01 8 133859019 133859019 C T PHF20L1 3'UTR 0.14 TCGA-L5-A8NU-01 8 21959806 21959806 C T FAM160B2 Silent p.L658L 0.16 TCGA-L5-A8NU-01 8 32463100 32463100 A T NRG1 Missense_Mutation p.N100I 0.11 deleterious(0.02) benign(0.211) TCGA-L5-A8NU-01 8 72969981 72969981 C T TRPA1 Nonsense_Mutation p.W355* 0.11 TCGA-L5-A8NU-01 9 90321986 90321986 T G DAPK1 Missense_Mutation p.L1334V 0.15 deleterious(0) probably_damaging(0.95) TCGA-L5-A8NU-01 X 123234899 123234899 A C STAG2 3'UTR 0.31 TCGA-L5-A8NU-01 X 130218356 130218356 T C ARHGAP36 Silent p.A241A 0.16 TCGA-L5-A8NU-01 X 130409498 130409498 A C IGSF1 Missense_Mutation p.S1051R 0.20 tolerated(0.06) possibly_damaging(0.885) TCGA-L5-A8NU-01 X 53455374 53455374 G T RIBC1 Missense_Mutation p.D115Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-L5-A8NU-01 X 83127967 83127967 T G CYLC1 Missense_Mutation p.I84S 0.27 tolerated(0.44) probably_damaging(0.923) TCGA-L5-A8NV-01 10 100190889 100190889 T C HPS1 Missense_Mutation p.S223G 0.25 deleterious(0.05) benign(0.007) TCGA-L5-A8NV-01 10 102249885 102249885 G A SEC31B Missense_Mutation p.R949C 0.36 tolerated(0.07) benign(0.276) TCGA-L5-A8NV-01 10 118704457 118704457 T C KIAA1598 Missense_Mutation p.K230R 0.22 tolerated(0.13) benign(0.066) TCGA-L5-A8NV-01 10 124538819 124538819 G T DMBT1P1 RNA 0.36 TCGA-L5-A8NV-01 10 1406038 1406038 G A ADARB2 Missense_Mutation p.R88W 0.37 tolerated(0.19) benign(0.01) TCGA-L5-A8NV-01 10 48414221 48414221 C T GDF2 Missense_Mutation p.R216Q 0.28 tolerated(0.07) benign(0.179) TCGA-L5-A8NV-01 10 55912910 55912910 A C PCDH15 Silent p.T578T 0.23 TCGA-L5-A8NV-01 10 93390347 93390347 C A PPP1R3C Silent p.A97A 0.27 TCGA-L5-A8NV-01 10 96802803 96802803 A - CYP2C8 Frame_Shift_Del p.I331Mfs*21 0.15 TCGA-L5-A8NV-01 11 10527698 10527698 C A AMPD3 3'UTR 0.13 TCGA-L5-A8NV-01 11 120833225 120833225 G A GRIK4 Missense_Mutation p.V701M 0.31 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NV-01 11 125484062 125484062 C T STT3A Silent p.N545N 0.23 TCGA-L5-A8NV-01 11 18722743 18722743 T C TMEM86A Silent p.H95H 0.29 TCGA-L5-A8NV-01 11 36300161 36300161 G A COMMD9 Silent p.L61L 0.23 TCGA-L5-A8NV-01 11 624978 624978 C T CDHR5 5'UTR 0.24 TCGA-L5-A8NV-01 11 63533490 63533490 C T C11orf95 RNA 0.24 TCGA-L5-A8NV-01 11 63724174 63724174 C T NAA40 3'UTR 0.14 TCGA-L5-A8NV-01 11 67232151 67232153 GAA - TMEM134 In_Frame_Del p.F174del 0.17 TCGA-L5-A8NV-01 11 7110479 7110479 G A RBMXL2 Missense_Mutation p.R43Q 0.36 deleterious(0.03) benign(0.162) TCGA-L5-A8NV-01 11 85428540 85428540 T C SYTL2 Missense_Mutation p.E872G 0.11 deleterious(0) possibly_damaging(0.804) TCGA-L5-A8NV-01 12 113624799 113624799 C T RITA1 Missense_Mutation p.T83I 0.23 deleterious(0.01) possibly_damaging(0.76) TCGA-L5-A8NV-01 12 122958009 122958009 A G ZCCHC8 3'UTR 0.21 TCGA-L5-A8NV-01 12 57610780 57610780 T A NXPH4 Missense_Mutation p.L10M 0.34 deleterious_low_confidence(0.02) benign(0.045) TCGA-L5-A8NV-01 12 89992491 89992491 T G ATP2B1 Intron 0.13 TCGA-L5-A8NV-01 14 104462118 104462118 C T TDRD9 Missense_Mutation p.S451F 0.17 deleterious(0) probably_damaging(1) TCGA-L5-A8NV-01 14 19377744 19377744 G A OR11H12 Missense_Mutation p.A51T 0.18 tolerated(0.21) benign(0.006) TCGA-L5-A8NV-01 14 29237560 29237560 G A FOXG1 Missense_Mutation p.A359T 0.19 tolerated(0.15) benign(0.005) TCGA-L5-A8NV-01 14 65008911 65008911 C A HSPA2 Silent p.G448G 0.14 TCGA-L5-A8NV-01 14 89178750 89178750 C T EML5 Missense_Mutation p.V508I 0.06 deleterious(0.01) probably_damaging(0.968) TCGA-L5-A8NV-01 14 92609414 92609414 C T CPSF2 Missense_Mutation p.R306C 0.13 deleterious(0) probably_damaging(0.973) TCGA-L5-A8NV-01 14 94503806 94503806 C A OTUB2 Nonsense_Mutation p.Y28* 0.23 TCGA-L5-A8NV-01 15 49620847 49620850 TCTC - FAM227B Frame_Shift_Del p.R481Nfs*33 0.14 TCGA-L5-A8NV-01 15 65623905 65623905 C A IGDCC3 Missense_Mutation p.R414M 0.43 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NV-01 15 73855574 73855574 T A NPTN Intron 0.10 TCGA-L5-A8NV-01 15 84611717 84611717 G A ADAMTSL3 Silent p.T791T 0.18 TCGA-L5-A8NV-01 16 29676104 29676104 G T SPN Missense_Mutation p.R352L 0.33 deleterious(0.02) possibly_damaging(0.858) TCGA-L5-A8NV-01 17 11895864 11895864 C T ZNF18 Missense_Mutation p.G95R 0.24 tolerated(0.06) benign(0.114) TCGA-L5-A8NV-01 17 15231347 15231347 C T TEKT3 Missense_Mutation p.D209N 0.26 deleterious(0.01) benign(0.221) TCGA-L5-A8NV-01 17 16725684 16725684 G A AC022596.6 RNA 0.04 TCGA-L5-A8NV-01 17 21101964 21101964 C T TMEM11 Silent p.T84T 0.20 TCGA-L5-A8NV-01 17 32906277 32906277 G A C17orf102 Missense_Mutation p.T8M 0.24 tolerated_low_confidence(0.26) probably_damaging(0.968) TCGA-L5-A8NV-01 17 35564696 35564696 G T ACACA Missense_Mutation p.N1242K 0.19 tolerated(0.71) probably_damaging(0.919) TCGA-L5-A8NV-01 17 38187474 38187474 G A MED24 Silent p.L364L 0.27 TCGA-L5-A8NV-01 17 39221946 39221946 G A KRTAP2-4 Missense_Mutation p.T51M 0.18 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NV-01 17 40483492 40483492 G A STAT3 Silent p.D369D 0.18 TCGA-L5-A8NV-01 17 61586616 61586616 C T ACE 3'UTR 0.19 TCGA-L5-A8NV-01 17 74133870 74133870 G A FOXJ1 Missense_Mutation p.P277L 0.27 tolerated(0.15) benign(0.423) TCGA-L5-A8NV-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.23 TCGA-L5-A8NV-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.18 tolerated(0.11) benign(0.308) TCGA-L5-A8NV-01 17 7798335 7798335 A T CHD3 Missense_Mutation p.E516V 0.37 benign(0.403) TCGA-L5-A8NV-01 17 78704474 78704474 C T RPTOR Nonsense_Mutation p.Q208* 0.17 TCGA-L5-A8NV-01 17 8702343 8702343 C T MFSD6L Silent p.P32P 0.22 TCGA-L5-A8NV-01 18 14542996 14542996 G A POTEC Silent p.D50D 0.07 TCGA-L5-A8NV-01 18 42531877 42531877 G A SETBP1 Missense_Mutation p.E858K 0.17 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NV-01 19 12858341 12858341 G A ASNA1 Missense_Mutation p.D284N 0.24 tolerated(0.38) benign(0.003) TCGA-L5-A8NV-01 19 12975991 12975991 A G MAST1 Missense_Mutation p.Q546R 0.39 deleterious(0) possibly_damaging(0.893) TCGA-L5-A8NV-01 19 1482972 1482972 G A PCSK4 Missense_Mutation p.S540F 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-L5-A8NV-01 19 43236999 43236999 C A PSG3 Nonsense_Mutation p.E216* 0.28 TCGA-L5-A8NV-01 19 43372068 43372068 A G PSG1 3'UTR 0.06 TCGA-L5-A8NV-01 19 43373045 43373045 G A PSG1 Missense_Mutation p.P284L 0.20 tolerated(0.07) benign(0.196) TCGA-L5-A8NV-01 19 43859867 43859867 G A CD177 3'UTR 0.23 TCGA-L5-A8NV-01 19 44169562 44169562 C T PLAUR Silent p.K72K 0.28 TCGA-L5-A8NV-01 19 46145701 46145701 C G C19orf83 Missense_Mutation p.A81G 0.30 benign(0.004) TCGA-L5-A8NV-01 19 46295591 46295591 G A DMWD Missense_Mutation p.R142C 0.21 tolerated(0.07) possibly_damaging(0.876) TCGA-L5-A8NV-01 19 48058953 48058953 G A ZNF541 Missense_Mutation p.P54L 0.34 tolerated(1) benign(0) TCGA-L5-A8NV-01 19 51330175 51330175 G A KLK15 Missense_Mutation p.S147F 0.33 deleterious(0) possibly_damaging(0.854) TCGA-L5-A8NV-01 19 52003613 52003613 C T SIGLEC12 Intron 0.22 TCGA-L5-A8NV-01 19 52033988 52033988 G A SIGLEC6 Missense_Mutation p.T218M 0.41 tolerated(0.13) benign(0.012) TCGA-L5-A8NV-01 19 55743292 55743292 T G PPP6R1 Silent p.R728R 0.30 TCGA-L5-A8NV-01 19 57036330 57036330 C T ZNF471 Silent p.A298A 0.28 TCGA-L5-A8NV-01 19 57089220 57089220 C A ZNF470 Missense_Mutation p.H475N 0.23 deleterious(0) probably_damaging(0.983) TCGA-L5-A8NV-01 19 9047103 9047103 A G MUC16 Missense_Mutation p.S11510P 0.17 possibly_damaging(0.683) TCGA-L5-A8NV-01 1 103380337 103380337 C T COL11A1 Missense_Mutation p.E1283K 0.33 unknown(0) TCGA-L5-A8NV-01 1 110032706 110032706 C T ATXN7L2 Missense_Mutation p.P398S 0.16 tolerated(0.36) benign(0.003) TCGA-L5-A8NV-01 1 160105632 160105632 G A ATP1A2 Missense_Mutation p.R763H 0.13 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NV-01 1 177133563 177133563 G A ASTN1 Silent p.L84L 0.24 TCGA-L5-A8NV-01 1 179590227 179590230 GTAA - TDRD5 Splice_Site p.X324_splice 0.17 TCGA-L5-A8NV-01 1 19482038 19482038 G A UBR4 Missense_Mutation p.S2066L 0.15 possibly_damaging(0.889) TCGA-L5-A8NV-01 1 197871938 197871938 G A C1orf53 Silent p.A53A 0.19 TCGA-L5-A8NV-01 1 204591107 204591107 T C LRRN2 5'UTR 0.22 TCGA-L5-A8NV-01 1 205039134 205039134 C T CNTN2 Silent p.N792N 0.43 TCGA-L5-A8NV-01 1 219347271 219347271 C T LYPLAL1 Silent p.I13I 0.34 TCGA-L5-A8NV-01 1 225533815 225533815 C T DNAH14 Silent p.G2714G 0.18 TCGA-L5-A8NV-01 1 232172460 232172460 G T DISC1 Missense_Mutation p.Q816H 0.31 deleterious(0) probably_damaging(0.971) TCGA-L5-A8NV-01 1 236187408 236187408 C G NID1 Missense_Mutation p.C697S 0.26 deleterious(0) probably_damaging(0.95) TCGA-L5-A8NV-01 1 28904175 28904177 ATG - TRNAU1AP 3'UTR 0.40 TCGA-L5-A8NV-01 1 75688115 75688115 A G SLC44A5 Missense_Mutation p.V339A 0.35 deleterious(0) possibly_damaging(0.676) TCGA-L5-A8NV-01 20 1288354 1288354 T C SNPH 3'UTR 0.25 TCGA-L5-A8NV-01 20 34287270 34287270 G T ROMO1 5'UTR 0.20 TCGA-L5-A8NV-01 20 62203546 62203546 C T HELZ2 Missense_Mutation p.A65T 0.33 tolerated(0.22) possibly_damaging(0.536) TCGA-L5-A8NV-01 21 19628832 19628832 A G CHODL Missense_Mutation p.K29R 0.29 tolerated(0.53) benign(0.223) TCGA-L5-A8NV-01 21 31914139 31914139 C T KRTAP19-6 Missense_Mutation p.G5D 0.21 tolerated_low_confidence(0.55) unknown(0) TCGA-L5-A8NV-01 21 42647541 42647541 G A BACE2 Missense_Mutation p.R516H 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L5-A8NV-01 22 17308780 17308780 G T HSFY1P1 RNA 0.26 TCGA-L5-A8NV-01 22 19870861 19870861 C A TXNRD2 Missense_Mutation p.G358V 0.12 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NV-01 22 19969146 19969146 C T ARVCF Missense_Mutation p.A162T 0.45 tolerated(1) benign(0.001) TCGA-L5-A8NV-01 22 31218634 31218634 G A OSBP2 Intron 0.19 TCGA-L5-A8NV-01 22 32110959 32110959 C T PRR14L Missense_Mutation p.V956I 0.17 tolerated(0.44) benign(0.001) TCGA-L5-A8NV-01 22 39174523 39174523 G A DNAL4 3'UTR 0.11 TCGA-L5-A8NV-01 22 41173083 41173083 C T SLC25A17 Silent p.T218T 0.35 TCGA-L5-A8NV-01 22 50301593 50301593 C T ALG12 Splice_Site p.X257_splice 0.30 TCGA-L5-A8NV-01 2 113191033 113191033 C T RGPD8 5'UTR 0.25 TCGA-L5-A8NV-01 2 122363586 122363586 T C CLASP1 5'UTR 0.20 TCGA-L5-A8NV-01 2 162930622 162930622 C A DPP4 5'UTR 0.24 TCGA-L5-A8NV-01 2 166605343 166605343 G A GALNT3 Missense_Mutation p.S617L 0.57 tolerated(0.09) benign(0.002) TCGA-L5-A8NV-01 2 179418788 179418788 G A TTN Silent p.L29684L 0.50 TCGA-L5-A8NV-01 2 191300945 191300945 A T MFSD6 Missense_Mutation p.I64L 0.55 deleterious(0.05) benign(0.005) TCGA-L5-A8NV-01 2 220432568 220432568 G A OBSL1 Missense_Mutation p.P469L 0.58 deleterious(0) benign(0.03) TCGA-L5-A8NV-01 2 29164403 29164403 C T WDR43 Missense_Mutation p.S566L 0.35 deleterious(0) possibly_damaging(0.733) TCGA-L5-A8NV-01 2 48685277 48685279 TCT - PPP1R21 In_Frame_Del p.S98del 0.33 TCGA-L5-A8NV-01 2 50149340 50149340 T G NRXN1 Missense_Mutation p.E1462D 0.24 deleterious_low_confidence(0.01) possibly_damaging(0.709) TCGA-L5-A8NV-01 2 64069545 64069545 G T UGP2 Intron 0.24 TCGA-L5-A8NV-01 2 85875088 85875088 G A USP39 Silent p.Q533Q 0.32 TCGA-L5-A8NV-01 2 86693894 86693894 A - KDM3A Frame_Shift_Del p.K471Rfs*2 0.09 TCGA-L5-A8NV-01 2 9008633 9008633 G A MBOAT2 Silent p.D310D 0.48 TCGA-L5-A8NV-01 3 119101232 119101232 G A ARHGAP31 Silent p.A175A 0.20 TCGA-L5-A8NV-01 3 122144782 122144782 C T KPNA1 3'UTR 0.36 TCGA-L5-A8NV-01 3 123375992 123375992 C T MYLK Silent p.T1423T 0.36 TCGA-L5-A8NV-01 3 183665162 183665162 C T ABCC5 Missense_Mutation p.G1122R 0.33 deleterious(0.01) probably_damaging(0.981) TCGA-L5-A8NV-01 3 27463270 27463270 C G SLC4A7 Missense_Mutation p.V414L 0.32 tolerated(0.34) probably_damaging(0.998) TCGA-L5-A8NV-01 3 44285525 44285525 G T TOPAZ1 Missense_Mutation p.K509N 0.17 tolerated(0.15) possibly_damaging(0.693) TCGA-L5-A8NV-01 3 52554873 52554873 G A STAB1 Silent p.P1920P 0.48 TCGA-L5-A8NV-01 3 56707745 56707745 G A FAM208A Nonsense_Mutation p.Q114* 0.44 TCGA-L5-A8NV-01 4 104066470 104066470 C T CENPE Missense_Mutation p.E1532K 0.32 benign(0.004) TCGA-L5-A8NV-01 4 140395932 140395932 G A RAB33B 3'UTR 0.26 TCGA-L5-A8NV-01 4 140640310 140640310 G A MAML3 3'UTR 0.21 TCGA-L5-A8NV-01 4 151749370 151749370 T C LRBA Silent p.L1711L 0.05 TCGA-L5-A8NV-01 4 154702531 154702531 G A SFRP2 3'UTR 0.24 TCGA-L5-A8NV-01 4 156274462 156274462 C T MAP9 Missense_Mutation p.A471T 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NV-01 4 176555147 176555147 G T GPM6A 3'UTR 0.33 TCGA-L5-A8NV-01 4 183522243 183522243 G T TENM3 Silent p.L226L 0.28 TCGA-L5-A8NV-01 4 55561936 55561936 T A KIT Missense_Mutation p.V109E 0.06 deleterious(0) probably_damaging(0.998) TCGA-L5-A8NV-01 4 55604601 55604601 T C KIT Missense_Mutation p.S937P 0.10 tolerated(0.27) possibly_damaging(0.602) TCGA-L5-A8NV-01 4 73013235 73013235 C T NPFFR2 Silent p.F425F 0.36 TCGA-L5-A8NV-01 4 78532230 78532230 C T CXCL13 3'UTR 0.42 TCGA-L5-A8NV-01 4 80329257 80329257 G A GK2 Missense_Mutation p.A33V 0.28 tolerated(0.07) possibly_damaging(0.49) TCGA-L5-A8NV-01 5 113831724 113831724 A C KCNN2 Missense_Mutation p.S529R 0.22 tolerated(0.19) probably_damaging(0.962) TCGA-L5-A8NV-01 5 132537685 132537685 G T FSTL4 Missense_Mutation p.P589H 0.32 deleterious(0.05) benign(0.043) TCGA-L5-A8NV-01 5 138643091 138643091 G A MATR3 5'UTR 0.09 TCGA-L5-A8NV-01 5 140167566 140167566 C T PCDHA1 Missense_Mutation p.A564V 0.22 tolerated_low_confidence(0.26) benign(0.019) TCGA-L5-A8NV-01 5 140531428 140531428 C T PCDHB6 Silent p.G530G 0.29 TCGA-L5-A8NV-01 5 140725137 140725137 G A PCDHGA3 Missense_Mutation p.V513I 0.33 tolerated_low_confidence(0.18) benign(0.225) TCGA-L5-A8NV-01 5 141019164 141019164 G A RELL2 Missense_Mutation p.E151K 0.10 tolerated(0.27) benign(0.049) TCGA-L5-A8NV-01 5 156746882 156746882 C T CYFIP2 Missense_Mutation p.T464M 0.08 deleterious(0.04) benign(0.104) TCGA-L5-A8NV-01 5 21755909 21755909 C T CDH12 Missense_Mutation p.R559H 0.36 tolerated(0.06) possibly_damaging(0.829) TCGA-L5-A8NV-01 5 35793299 35793299 G A SPEF2 Silent p.E1531E 0.39 TCGA-L5-A8NV-01 5 481731 481731 G A SLC9A3 Missense_Mutation p.S489L 0.44 deleterious(0.01) possibly_damaging(0.664) TCGA-L5-A8NV-01 5 52145257 52145257 C T ITGA1 Silent p.S40S 0.14 TCGA-L5-A8NV-01 5 86686811 86686811 C T RASA1 3'Flank 0.19 TCGA-L5-A8NV-01 6 127797352 127797352 C T SOGA3 Missense_Mutation p.E607K 0.37 deleterious(0.03) probably_damaging(1) TCGA-L5-A8NV-01 6 17799582 17799582 G A KIF13A Missense_Mutation p.T902M 0.14 deleterious(0.02) possibly_damaging(0.684) TCGA-L5-A8NV-01 6 30080455 30080455 A G TRIM31 Missense_Mutation p.I43T 0.37 tolerated(0.47) benign(0.006) TCGA-L5-A8NV-01 6 48036096 48036096 C A PTCHD4 Missense_Mutation p.S99I 0.31 deleterious(0.03) benign(0.202) TCGA-L5-A8NV-01 7 100369492 100369492 G A ZAN Silent p.V1758V 0.31 TCGA-L5-A8NV-01 7 100843572 100843572 C T MOGAT3 Silent p.S77S 0.10 TCGA-L5-A8NV-01 7 128488921 128488921 G A FLNC Silent p.P1604P 0.56 TCGA-L5-A8NV-01 7 135433402 135433402 G A FAM180A 5'UTR 0.43 TCGA-L5-A8NV-01 7 155532610 155532610 C T RBM33 Missense_Mutation p.P647S 0.30 deleterious(0.03) unknown(0) TCGA-L5-A8NV-01 7 17832004 17832004 T C SNX13 3'UTR 0.23 TCGA-L5-A8NV-01 7 27871643 27871643 A G JAZF1 3'UTR 0.26 TCGA-L5-A8NV-01 7 31692451 31692451 C G CCDC129 Intron 0.17 TCGA-L5-A8NV-01 7 75959049 75959049 C A YWHAG Missense_Mutation p.A197S 0.30 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-L5-A8NV-01 7 76109743 76109743 C T DTX2 5'UTR 0.24 TCGA-L5-A8NV-01 7 94991782 94991782 T G PON3 Missense_Mutation p.L266F 0.30 tolerated(0.09) benign(0.098) TCGA-L5-A8NV-01 7 99022949 99022949 C T ATP5J2-PTCD1 Silent p.P451P 0.32 TCGA-L5-A8NV-01 8 11142358 11142358 C T MTMR9 5'UTR 0.54 TCGA-L5-A8NV-01 8 133935606 133935606 G T TG Nonsense_Mutation p.E1518* 0.23 TCGA-L5-A8NV-01 8 145555404 145555404 C T SCRT1 3'UTR 0.38 TCGA-L5-A8NV-01 8 30695127 30695127 C T TEX15 Silent p.A2508A 0.23 TCGA-L5-A8NV-01 8 49637222 49637222 C A EFCAB1 3'UTR 0.39 TCGA-L5-A8NV-01 9 116359579 116359579 A T RGS3 3'UTR 0.31 TCGA-L5-A8NV-01 9 125289092 125289092 T C OR1N1 Missense_Mutation p.M161V 0.13 tolerated(0.11) benign(0.002) TCGA-L5-A8NV-01 9 129266836 129266836 G T MVB12B 3'UTR 0.31 TCGA-L5-A8NV-01 9 15307094 15307094 C T TTC39B Silent p.L76L 0.24 TCGA-L5-A8NV-01 9 23692817 23692817 C T ELAVL2 Missense_Mutation p.G273E 0.36 deleterious(0.04) benign(0.15) TCGA-L5-A8NV-01 9 84608354 84608354 C A SPATA31D1 Missense_Mutation p.S990Y 0.36 deleterious(0.02) benign(0.102) TCGA-L5-A8NV-01 9 8518133 8518133 C A PTPRD Missense_Mutation p.A420S 0.33 tolerated(0.14) possibly_damaging(0.631) TCGA-L5-A8NV-01 X 101572262 101572262 G A NXF2 Intron 0.32 TCGA-L5-A8NV-01 X 23410816 23410816 C T PTCHD1 Missense_Mutation p.T394M 0.57 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NV-01 X 3241682 3241682 G A MXRA5 Missense_Mutation p.R682C 0.58 deleterious(0.02) benign(0.031) TCGA-L5-A8NV-01 X 37028413 37028413 C A FAM47C Missense_Mutation p.P644T 0.57 tolerated(0.07) probably_damaging(0.996) TCGA-L5-A8NV-01 X 54223488 54223488 T C WNK3 3'UTR 0.47 TCGA-L5-A8NV-01 X 86069837 86069837 G A DACH2 Missense_Mutation p.D562N 0.50 deleterious(0.05) benign(0.157) TCGA-L5-A8NV-01 X 91090519 91090519 G T PCDH11X Missense_Mutation p.G6W 0.55 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NW-01 10 120817707 120817707 C T EIF3A Missense_Mutation p.E580K 0.40 deleterious(0.01) unknown(0) TCGA-L5-A8NW-01 10 123846789 123846789 G A TACC2 Missense_Mutation p.D1592N 0.16 benign(0.015) TCGA-L5-A8NW-01 10 127350461 127350461 C T TEX36 Missense_Mutation p.R46Q 0.54 tolerated(1) benign(0.002) TCGA-L5-A8NW-01 10 135273405 135273405 G A SPRN Intron 0.64 TCGA-L5-A8NW-01 10 27702849 27702849 G A PTCHD3 Missense_Mutation p.R111W 0.18 deleterious(0.01) possibly_damaging(0.878) TCGA-L5-A8NW-01 10 33471651 33471651 G A NRP1 Silent p.N819N 0.23 TCGA-L5-A8NW-01 10 72183013 72183013 C T EIF4EBP2 3'UTR 0.32 TCGA-L5-A8NW-01 11 113659952 113659952 C T ATF4P4 5'Flank 0.22 TCGA-L5-A8NW-01 11 115046449 115046449 C T CADM1 3'UTR 0.29 TCGA-L5-A8NW-01 11 132290049 132290049 G A OPCML 3'UTR 0.41 TCGA-L5-A8NW-01 11 30034788 30034788 A T KCNA4 5'UTR 0.63 TCGA-L5-A8NW-01 11 35308439 35308439 C T SLC1A2 Missense_Mutation p.R384H 0.61 deleterious(0) probably_damaging(1) TCGA-L5-A8NW-01 11 45954512 45954513 - A PHF21A 3'Flank 0.13 TCGA-L5-A8NW-01 11 46726399 46726399 C G ZNF408 Missense_Mutation p.C383W 0.14 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NW-01 11 49175865 49175865 A T FOLH1 Silent p.A601A 0.42 TCGA-L5-A8NW-01 11 55563643 55563643 C T OR5D14 Silent p.F204F 0.60 TCGA-L5-A8NW-01 11 56043680 56043680 T C OR5T1 Missense_Mutation p.V189A 0.52 deleterious(0) benign(0.114) TCGA-L5-A8NW-01 11 60565961 60565961 C T MS4A10 Silent p.G232G 0.13 TCGA-L5-A8NW-01 11 66238737 66238737 G T PELI3 Silent p.G83G 0.28 TCGA-L5-A8NW-01 11 66411101 66411101 G A RBM14-RBM4 Missense_Mutation p.R173H 0.38 tolerated(0.24) benign(0) TCGA-L5-A8NW-01 11 95825153 95825153 C G MAML2 Missense_Mutation p.R681T 0.30 unknown(0) TCGA-L5-A8NW-01 12 111471962 111471962 G A CUX2 5'UTR 0.32 TCGA-L5-A8NW-01 12 124171535 124171535 C T TCTN2 Silent p.S239S 0.50 TCGA-L5-A8NW-01 12 1993483 1993483 C T CACNA2D4 Missense_Mutation p.R426Q 0.36 deleterious(0) probably_damaging(0.948) TCGA-L5-A8NW-01 12 20522419 20522419 G A PDE3A Silent p.A67A 0.38 TCGA-L5-A8NW-01 12 24365393 24365393 A G MIR920 RNA 0.38 TCGA-L5-A8NW-01 12 40761529 40761529 G T LRRK2 Nonsense_Mutation p.E2516* 0.20 TCGA-L5-A8NW-01 12 49431220 49431220 C T KMT2D Missense_Mutation p.A3307T 0.30 benign(0.164) TCGA-L5-A8NW-01 12 55886609 55886609 G A OR6C68 Missense_Mutation p.A150T 0.22 tolerated_low_confidence(0.18) benign(0.039) TCGA-L5-A8NW-01 12 58014159 58014159 G T SLC26A10 Silent p.P52P 0.19 TCGA-L5-A8NW-01 12 58025827 58025827 G A B4GALNT1 Missense_Mutation p.A30V 0.21 tolerated(0.54) benign(0.035) TCGA-L5-A8NW-01 12 66357307 66357307 G T HMGA2 3'UTR 0.35 TCGA-L5-A8NW-01 12 71286634 71286635 - T PTPRR Frame_Shift_Ins p.I61Nfs*5 0.21 TCGA-L5-A8NW-01 12 9229971 9229971 C T A2M Missense_Mutation p.A1108T 0.38 deleterious(0.03) probably_damaging(0.917) TCGA-L5-A8NW-01 13 109672130 109672130 A - MYO16 Frame_Shift_Del p.K869Nfs*6 0.27 TCGA-L5-A8NW-01 13 23915370 23915370 T G SACS Missense_Mutation p.K882T 0.65 benign(0.38) TCGA-L5-A8NW-01 13 27333439 27333439 C T GPR12 Missense_Mutation p.V176I 0.35 tolerated(0.25) benign(0.008) TCGA-L5-A8NW-01 13 36180665 36180665 C A NBEA Missense_Mutation p.L2467I 0.72 deleterious(0) probably_damaging(0.995) TCGA-L5-A8NW-01 13 38237745 38237745 T C TRPC4 Missense_Mutation p.N499S 0.37 deleterious(0.04) probably_damaging(0.923) TCGA-L5-A8NW-01 14 29237630 29237630 C T FOXG1 Missense_Mutation p.A382V 0.36 deleterious(0.02) benign(0.066) TCGA-L5-A8NW-01 14 29238246 29238246 A T FOXG1 3'UTR 0.28 TCGA-L5-A8NW-01 14 29261230 29261230 A C C14orf23 Missense_Mutation p.E89D 0.22 tolerated_low_confidence(0.08) benign(0.388) TCGA-L5-A8NW-01 14 55255674 55255674 G A SAMD4A 3'UTR 0.47 TCGA-L5-A8NW-01 14 64152751 64152751 C A SGPP1 3'UTR 0.34 TCGA-L5-A8NW-01 14 74205351 74205351 G A ELMSAN1 Missense_Mutation p.T454M 0.41 deleterious(0) possibly_damaging(0.81) TCGA-L5-A8NW-01 14 99636744 99636745 - A BCL11B 3'UTR 0.21 TCGA-L5-A8NW-01 15 25324279 25324279 T A SNORD116-13 RNA 0.46 TCGA-L5-A8NW-01 15 42556331 42556331 G A TMEM87A Missense_Mutation p.S121L 0.80 tolerated(0.32) benign(0.002) TCGA-L5-A8NW-01 15 48807662 48807662 G A FBN1 Missense_Mutation p.R464C 0.57 possibly_damaging(0.586) TCGA-L5-A8NW-01 15 65157548 65157548 C - PLEKHO2 Frame_Shift_Del p.P313Hfs*9 0.39 TCGA-L5-A8NW-01 15 74912501 74912501 C T CLK3 Missense_Mutation p.R250W 0.71 tolerated(0.06) possibly_damaging(0.634) TCGA-L5-A8NW-01 16 18812603 18812603 C T ARL6IP1 Intron 0.35 TCGA-L5-A8NW-01 16 54966542 54966542 C G IRX5 Missense_Mutation p.L128V 0.24 deleterious(0) probably_damaging(0.991) TCGA-L5-A8NW-01 16 68619 68619 G A WASH4P Silent p.T57T 0.45 TCGA-L5-A8NW-01 17 20013849 20013849 C T SPECC1 Missense_Mutation p.T86M 0.50 deleterious(0.01) possibly_damaging(0.514) TCGA-L5-A8NW-01 17 39262214 39262214 C T KRTAP4-9 Missense_Mutation p.P192S 0.32 deleterious(0.03) unknown(0) TCGA-L5-A8NW-01 17 67300826 67300827 - G ABCA5 Frame_Shift_Ins p.L305Pfs*18 0.16 TCGA-L5-A8NW-01 17 7578403 7578403 C A TP53 Missense_Mutation p.C176F 0.52 deleterious(0) probably_damaging(0.993) TCGA-L5-A8NW-01 17 7851960 7851960 G A CNTROB Missense_Mutation p.E846K 0.21 tolerated_low_confidence(0.38) benign(0) TCGA-L5-A8NW-01 17 79862952 79862952 T C PCYT2 Missense_Mutation p.I368V 0.31 tolerated(0.35) possibly_damaging(0.771) TCGA-L5-A8NW-01 17 80048927 80048927 C T FASN Missense_Mutation p.R504H 0.30 tolerated(0.29) benign(0.003) TCGA-L5-A8NW-01 18 10857193 10857194 - T PIEZO2 Frame_Shift_Ins p.I170Nfs*2 0.31 TCGA-L5-A8NW-01 18 15316546 15316546 A G RNU6-721P 3'Flank 0.12 TCGA-L5-A8NW-01 18 24496706 24496706 C T CHST9 Missense_Mutation p.M283I 0.21 tolerated(0.08) benign(0.053) TCGA-L5-A8NW-01 18 33706765 33706765 G T SLC39A6 Missense_Mutation p.S69Y 0.40 deleterious(0) possibly_damaging(0.494) TCGA-L5-A8NW-01 18 44037234 44037234 C T RNF165 3'UTR 0.70 TCGA-L5-A8NW-01 18 53017629 53017632 TGTC - TCF4 Frame_Shift_Del p.T272Rfs*63 0.61 TCGA-L5-A8NW-01 18 5398072 5398072 T G EPB41L3 Missense_Mutation p.K807T 0.59 tolerated(0.08) benign(0.371) TCGA-L5-A8NW-01 18 55021680 55021680 C T ST8SIA3 Missense_Mutation p.T76M 0.35 benign(0.185) TCGA-L5-A8NW-01 18 77246370 77246370 G A NFATC1 Missense_Mutation p.D726N 0.30 tolerated(0.05) benign(0.052) TCGA-L5-A8NW-01 19 11137009 11137009 G A SMARCA4 Missense_Mutation p.G1068S 0.69 benign(0.037) TCGA-L5-A8NW-01 19 12256139 12256139 C T ZNF625 Silent p.S364S 0.64 TCGA-L5-A8NW-01 19 1393355 1393355 G A NDUFS7 Intron 0.67 TCGA-L5-A8NW-01 19 14000750 14000750 C T C19orf57 Missense_Mutation p.G307S 0.23 tolerated(0.07) probably_damaging(0.97) TCGA-L5-A8NW-01 19 24010155 24010155 T A RPSAP58 Silent p.A64A 0.15 TCGA-L5-A8NW-01 19 24010482 24010482 G A RPSAP58 Silent p.L173L 0.12 TCGA-L5-A8NW-01 19 2426765 2426765 C T TIMM13 3'UTR 0.62 TCGA-L5-A8NW-01 19 33699710 33699710 A C SLC7A10 3'UTR 0.27 TCGA-L5-A8NW-01 19 35791232 35791232 G A MAG Missense_Mutation p.E299K 0.56 tolerated(0.45) benign(0.037) TCGA-L5-A8NW-01 19 37618367 37618367 A G ZNF420 Silent p.Q158Q 0.53 TCGA-L5-A8NW-01 19 37618622 37618622 A C ZNF420 Missense_Mutation p.K243N 0.30 deleterious(0.01) possibly_damaging(0.728) TCGA-L5-A8NW-01 19 37619335 37619335 G T ZNF420 Missense_Mutation p.G481V 0.27 deleterious(0) probably_damaging(0.981) TCGA-L5-A8NW-01 19 38190112 38190112 T G ZNF607 Missense_Mutation p.K307T 0.59 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NW-01 19 44096941 44096941 C T IRGQ Missense_Mutation p.R370K 0.13 tolerated(0.14) benign(0.001) TCGA-L5-A8NW-01 19 44501597 44501597 C T ZNF155 Missense_Mutation p.L541F 0.24 tolerated_low_confidence(0.18) benign(0.001) TCGA-L5-A8NW-01 19 46095041 46095041 G A GPR4 Silent p.I28I 0.21 TCGA-L5-A8NW-01 19 48821779 48821779 G A CCDC114 Silent p.S38S 0.18 TCGA-L5-A8NW-01 19 53794709 53794709 C T BIRC8 5'UTR 0.14 TCGA-L5-A8NW-01 19 5455606 5455606 C T ZNRF4 Missense_Mutation p.S35L 0.60 tolerated_low_confidence(0.54) benign(0.004) TCGA-L5-A8NW-01 19 56320173 56320173 G A NLRP11 Silent p.I601I 0.28 TCGA-L5-A8NW-01 19 56466632 56466632 G T NLRP8 Missense_Mutation p.C403F 0.17 deleterious(0) possibly_damaging(0.888) TCGA-L5-A8NW-01 19 57325232 57325232 A G PEG3 Silent p.T1526T 0.32 TCGA-L5-A8NW-01 19 58551837 58551837 G A ZSCAN1 Silent p.S130S 0.19 TCGA-L5-A8NW-01 19 58565407 58565407 C T ZSCAN1 Silent p.H405H 0.27 TCGA-L5-A8NW-01 19 59067332 59067332 G A UBE2M 3'UTR 0.24 TCGA-L5-A8NW-01 1 100573416 100573416 G A SASS6 Nonsense_Mutation p.Q336* 0.21 TCGA-L5-A8NW-01 1 1169613 1169613 G A B3GALT6 3'UTR 0.39 TCGA-L5-A8NW-01 1 12943091 12943091 A C PRAMEF4 Missense_Mutation p.F42C 0.25 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NW-01 1 156255725 156255725 G C TMEM79 Silent p.L236L 0.43 TCGA-L5-A8NW-01 1 157666085 157666085 G A FCRL3 Missense_Mutation p.R293W 0.30 deleterious(0.01) benign(0.041) TCGA-L5-A8NW-01 1 159036018 159036018 C T AIM2 Silent p.T166T 0.27 TCGA-L5-A8NW-01 1 159176175 159176175 T G DARC Missense_Mutation p.L318V 0.21 tolerated(0.37) benign(0.011) TCGA-L5-A8NW-01 1 177251284 177251284 A G BRINP2 3'UTR 0.33 TCGA-L5-A8NW-01 1 184681718 184681721 AAGA - EDEM3 Frame_Shift_Del p.F461Sfs*23 0.24 TCGA-L5-A8NW-01 1 196757398 196757398 T A CFHR3 Silent p.S161S 0.16 TCGA-L5-A8NW-01 1 22168802 22168802 G A HSPG2 Silent p.A2994A 0.30 TCGA-L5-A8NW-01 1 226819498 226819498 G C ITPKB 3'UTR 0.15 TCGA-L5-A8NW-01 1 231155560 231155560 G A FAM89A 3'UTR 0.31 TCGA-L5-A8NW-01 1 232172630 232172630 C A DISC1 3'UTR 0.58 TCGA-L5-A8NW-01 1 243668276 243668276 T G AKT3 3'UTR 0.77 TCGA-L5-A8NW-01 1 24411017 24411017 G A MYOM3 Silent p.S637S 0.21 TCGA-L5-A8NW-01 1 32049126 32049126 C T TINAGL1 Silent p.L178L 0.30 TCGA-L5-A8NW-01 1 3659673 3659673 G A TP73-AS1 RNA 0.42 TCGA-L5-A8NW-01 1 40027853 40027853 G A PABPC4 Silent p.I595I 0.24 TCGA-L5-A8NW-01 1 63867955 63867955 G A ALG6 Silent p.Q66Q 0.26 TCGA-L5-A8NW-01 1 7700578 7700578 C T CAMTA1 Missense_Mutation p.T210M 0.31 deleterious(0) probably_damaging(0.997) TCGA-L5-A8NW-01 1 90399229 90399229 G A LRRC8D Missense_Mutation p.G201E 0.24 tolerated(0.08) probably_damaging(0.981) TCGA-L5-A8NW-01 20 20180504 20180504 G T C20orf26 Missense_Mutation p.K630N 0.54 deleterious(0.02) possibly_damaging(0.471) TCGA-L5-A8NW-01 20 21492010 21492010 C T NKX2-2 3'UTR 0.23 TCGA-L5-A8NW-01 20 21492909 21492909 G A NKX2-2 Silent p.R158R 0.48 TCGA-L5-A8NW-01 20 21686355 21686355 A C PAX1 Missense_Mutation p.K2T 0.24 deleterious_low_confidence(0) possibly_damaging(0.749) TCGA-L5-A8NW-01 20 32868859 32868859 G A AHCY Missense_Mutation p.P427L 0.16 tolerated_low_confidence(0.06) benign(0.315) TCGA-L5-A8NW-01 20 33891796 33891796 T G UQCC1 Missense_Mutation p.K281T 0.12 tolerated(0.14) possibly_damaging(0.771) TCGA-L5-A8NW-01 20 4708280 4708280 C T PRND 3'UTR 0.18 TCGA-L5-A8NW-01 21 31538467 31538467 G T CLDN17 Missense_Mutation p.Q157K 0.33 tolerated(0.11) possibly_damaging(0.58) TCGA-L5-A8NW-01 22 20941065 20941065 T A MED15 3'UTR 0.59 TCGA-L5-A8NW-01 22 28316525 28316525 G T PITPNB 5'Flank 0.60 TCGA-L5-A8NW-01 22 50967742 50967742 A - TYMP Frame_Shift_Del p.R81Gfs*11 0.28 TCGA-L5-A8NW-01 2 141253199 141253199 T C LRP1B Missense_Mutation p.K2990R 0.24 benign(0.292) TCGA-L5-A8NW-01 2 160205671 160205671 C T BAZ2B Missense_Mutation p.E1662K 0.32 benign(0.304) TCGA-L5-A8NW-01 2 169869892 169869892 G T ABCB11 Nonsense_Mutation p.Y93* 0.33 TCGA-L5-A8NW-01 2 180809975 180809975 T C CWC22 Missense_Mutation p.R870G 0.57 deleterious_low_confidence(0) benign(0.146) TCGA-L5-A8NW-01 2 197645322 197645322 C T GTF3C3 Missense_Mutation p.M393I 0.19 tolerated(0.87) benign(0.002) TCGA-L5-A8NW-01 2 203383581 203383581 G A BMPR2 Missense_Mutation p.G220S 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-L5-A8NW-01 2 207629974 207629974 C T MDH1B Missense_Mutation p.G8S 0.35 deleterious(0) probably_damaging(1) TCGA-L5-A8NW-01 2 21235441 21235441 C T APOB Silent p.S1433S 0.40 TCGA-L5-A8NW-01 2 218940110 218940110 G A RUFY4 Missense_Mutation p.G319R 0.27 tolerated(0.48) benign(0.016) TCGA-L5-A8NW-01 2 25994382 25994382 C A ASXL2 Missense_Mutation p.C144F 0.16 deleterious(0) possibly_damaging(0.902) TCGA-L5-A8NW-01 2 6111974 6111974 G A DKFZP761K2322 5'UTR 0.31 TCGA-L5-A8NW-01 2 71681020 71681020 C A DYSF 5'UTR 0.35 TCGA-L5-A8NW-01 2 80529477 80529477 C T LRRTM1 Missense_Mutation p.V490I 0.19 tolerated(0.14) probably_damaging(0.959) TCGA-L5-A8NW-01 3 108270008 108270008 A T KIAA1524 Missense_Mutation p.N902K 0.27 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NW-01 3 131268922 131268922 T G CPNE4 Missense_Mutation p.I391L 0.83 deleterious(0.01) benign(0.051) TCGA-L5-A8NW-01 3 140419874 140419874 C T TRIM42 3'UTR 0.18 TCGA-L5-A8NW-01 3 148868389 148868389 C T HPS3 Silent p.N389N 0.59 TCGA-L5-A8NW-01 3 169540621 169540621 C T LRRIQ4 Silent p.N304N 0.42 TCGA-L5-A8NW-01 3 170606460 170606460 C T EIF5A2 3'UTR 0.54 TCGA-L5-A8NW-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.31 tolerated(0.05) possibly_damaging(0.704) TCGA-L5-A8NW-01 3 180326343 180326344 - A TTC14 Intron 0.48 TCGA-L5-A8NW-01 3 184104327 184104327 G A CHRD Silent p.A660A 0.56 TCGA-L5-A8NW-01 3 187416659 187416659 G A RTP2 Missense_Mutation p.A102V 0.23 tolerated(0.13) possibly_damaging(0.576) TCGA-L5-A8NW-01 3 28616803 28616803 C T LINC00693 RNA 0.60 TCGA-L5-A8NW-01 3 32933440 32933440 A T TRIM71 3'UTR 0.11 TCGA-L5-A8NW-01 3 52457215 52457215 G A PHF7 Nonsense_Mutation p.W343* 0.68 TCGA-L5-A8NW-01 3 73673859 73673859 C T PDZRN3 Missense_Mutation p.G40S 0.38 tolerated(0.42) benign(0.277) TCGA-L5-A8NW-01 3 77600026 77600026 A T ROBO2 Missense_Mutation p.T389S 0.63 tolerated(1) possibly_damaging(0.621) TCGA-L5-A8NW-01 3 81586214 81586214 A C GBE1 Missense_Mutation p.F551V 0.61 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NW-01 3 89445011 89445011 A G EPHA3 Missense_Mutation p.K444R 0.50 tolerated(1) benign(0.004) TCGA-L5-A8NW-01 3 97194249 97194249 G A EPHA6 Missense_Mutation p.V650I 0.29 tolerated(0.44) possibly_damaging(0.679) TCGA-L5-A8NW-01 3 98251394 98251394 G A GPR15 Missense_Mutation p.E173K 0.26 tolerated(0.19) probably_damaging(0.909) TCGA-L5-A8NW-01 4 100821845 100821845 T A DNAJB14 3'UTR 0.10 TCGA-L5-A8NW-01 4 102751177 102751177 C T BANK1 Missense_Mutation p.P95S 0.50 tolerated(0.15) benign(0.037) TCGA-L5-A8NW-01 4 125591791 125591791 G A ANKRD50 Nonsense_Mutation p.R881* 0.24 TCGA-L5-A8NW-01 4 154625101 154625102 - T TLR2 Frame_Shift_Ins p.L350Sfs*20 0.21 TCGA-L5-A8NW-01 4 155507473 155507473 C A FGA Missense_Mutation p.A370S 0.40 tolerated_low_confidence(0.66) benign(0.008) TCGA-L5-A8NW-01 4 183721583 183721583 G A TENM3 3'UTR 0.53 TCGA-L5-A8NW-01 4 38829588 38829588 C T TLR6 Missense_Mutation p.D503N 0.47 deleterious(0) possibly_damaging(0.694) TCGA-L5-A8NW-01 4 437306 437306 G T ZNF721 Missense_Mutation p.S317Y 0.36 tolerated(1) benign(0.06) TCGA-L5-A8NW-01 4 4864564 4864564 C T MSX1 Silent p.R202R 0.45 TCGA-L5-A8NW-01 4 73414399 73414399 T G ADAMTS3 Missense_Mutation p.Q100H 0.45 tolerated(0.19) benign(0.002) TCGA-L5-A8NW-01 4 8305945 8305945 T A HTRA3 Missense_Mutation p.F379I 0.46 deleterious(0.02) benign(0.017) TCGA-L5-A8NW-01 4 92520052 92520052 A C CCSER1 Missense_Mutation p.Q849H 0.42 tolerated_low_confidence(0.19) benign(0.004) TCGA-L5-A8NW-01 5 101572654 101572654 A G SLCO4C1 Missense_Mutation p.S695P 0.08 tolerated(0.32) benign(0) TCGA-L5-A8NW-01 5 1065587 1065587 G A SLC12A7 Missense_Mutation p.R750W 0.24 deleterious(0) probably_damaging(0.976) TCGA-L5-A8NW-01 5 122950081 122950081 C T CSNK1G3 Silent p.R453R 0.32 TCGA-L5-A8NW-01 5 127595297 127595297 G C FBN2 Silent p.L2863L 0.21 TCGA-L5-A8NW-01 5 133887749 133887749 G A JADE2 Missense_Mutation p.R54Q 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-L5-A8NW-01 5 140182828 140182828 G A PCDHA3 Silent p.A682A 0.30 TCGA-L5-A8NW-01 5 140503257 140503257 C A PCDHB4 Missense_Mutation p.F559L 0.35 deleterious(0.03) benign(0.02) TCGA-L5-A8NW-01 5 140589171 140589171 T C PCDHB12 Missense_Mutation p.V231A 0.34 tolerated_low_confidence(0.48) benign(0.024) TCGA-L5-A8NW-01 5 140626975 140626975 C A PCDHB15 Missense_Mutation p.T610K 0.26 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-L5-A8NW-01 5 149375696 149375696 G A TIGD6 Silent p.S72S 0.33 TCGA-L5-A8NW-01 5 149919713 149919713 C G NDST1 Missense_Mutation p.L546V 0.52 tolerated(0.58) possibly_damaging(0.624) TCGA-L5-A8NW-01 5 156906535 156906535 C A ADAM19 3'UTR 0.32 TCGA-L5-A8NW-01 5 159546081 159546081 G A PWWP2A Silent p.A105A 0.19 TCGA-L5-A8NW-01 5 169506071 169506071 G A DOCK2 Missense_Mutation p.R1696Q 0.21 tolerated(0.05) possibly_damaging(0.741) TCGA-L5-A8NW-01 5 176024095 176024095 C A GPRIN1 Missense_Mutation p.S914I 0.18 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NW-01 5 216926 216926 C T CCDC127 Silent p.R13R 0.24 TCGA-L5-A8NW-01 5 23526579 23526579 A T PRDM9 Missense_Mutation p.K461I 0.12 deleterious(0.02) possibly_damaging(0.852) TCGA-L5-A8NW-01 5 26881552 26881552 A C CDH9 Missense_Mutation p.L688R 0.27 tolerated(0.35) possibly_damaging(0.476) TCGA-L5-A8NW-01 5 36269493 36269493 T A RANBP3L Silent p.G89G 0.42 TCGA-L5-A8NW-01 5 37206493 37206493 A G C5orf42 Silent p.S985S 0.15 TCGA-L5-A8NW-01 5 94826690 94826690 T C TTC37 Missense_Mutation p.K1285E 0.24 tolerated(0.16) benign(0.004) TCGA-L5-A8NW-01 5 96222452 96222452 G A ERAP2 Missense_Mutation p.D270N 0.29 tolerated(0.08) probably_damaging(0.983) TCGA-L5-A8NW-01 6 133850571 133850571 A G EYA4 3'UTR 0.45 TCGA-L5-A8NW-01 6 143073445 143073446 - A HIVEP2 3'UTR 0.25 TCGA-L5-A8NW-01 6 1960205 1960205 C A GMDS Missense_Mutation p.G180V 0.19 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-L5-A8NW-01 6 26027469 26027469 G A HIST1H4B Silent p.R4R 0.28 TCGA-L5-A8NW-01 6 27833152 27833152 A T HIST1H2AL Missense_Mutation p.Q7L 0.25 deleterious_low_confidence(0.04) unknown(0) TCGA-L5-A8NW-01 6 28200715 28200715 G T ZSCAN9 Missense_Mutation p.C366F 0.38 deleterious(0) probably_damaging(0.996) TCGA-L5-A8NW-01 6 28269197 28269197 G T PGBD1 Missense_Mutation p.L522F 0.35 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NW-01 6 57244769 57244769 A C PRIM2 Missense_Mutation p.K177T 0.10 tolerated(0.32) benign(0.008) TCGA-L5-A8NW-01 6 69684705 69684705 A C BAI3 Silent p.R526R 0.46 TCGA-L5-A8NW-01 6 72975164 72975164 T G RIMS1 Missense_Mutation p.F1089C 0.33 tolerated(0.08) possibly_damaging(0.541) TCGA-L5-A8NW-01 6 75825618 75825618 A G COL12A1 Missense_Mutation p.Y2527H 0.30 possibly_damaging(0.636) TCGA-L5-A8NW-01 7 100165776 100165776 G A AGFG2 3'UTR 0.35 TCGA-L5-A8NW-01 7 100849595 100849595 T A PLOD3 Silent p.T728T 0.35 TCGA-L5-A8NW-01 7 104746052 104746052 A T KMT2E Missense_Mutation p.K788M 0.16 deleterious(0) possibly_damaging(0.781) TCGA-L5-A8NW-01 7 108214110 108214110 C G DNAJB9 3'UTR 0.39 TCGA-L5-A8NW-01 7 127013999 127013999 G A ZNF800 Missense_Mutation p.S464L 0.23 deleterious(0.02) benign(0.007) TCGA-L5-A8NW-01 7 141750548 141750548 T G MGAM Missense_Mutation p.L897V 0.26 deleterious(0.03) benign(0.047) TCGA-L5-A8NW-01 7 143929621 143929621 A T OR2A42 Missense_Mutation p.F106I 0.35 deleterious(0.01) benign(0.05) TCGA-L5-A8NW-01 7 23339222 23339222 C T MALSU1 Missense_Mutation p.A84V 0.19 tolerated(0.14) benign(0.011) TCGA-L5-A8NW-01 7 23571455 23571455 G A TRA2A 5'UTR 0.20 TCGA-L5-A8NW-01 7 299814 299814 G A FAM20C Silent p.P541P 0.25 TCGA-L5-A8NW-01 7 35944120 35944120 C G SEPT7 3'UTR 0.17 TCGA-L5-A8NW-01 7 65425980 65425980 G T GUSB Missense_Mutation p.F620L 0.33 tolerated(0.12) probably_damaging(0.92) TCGA-L5-A8NW-01 7 72718984 72718984 C T NSUN5 Missense_Mutation p.R204Q 0.19 tolerated(0.86) benign(0.002) TCGA-L5-A8NW-01 7 86415724 86415724 C T GRM3 Missense_Mutation p.R206C 0.31 deleterious(0.01) benign(0.073) TCGA-L5-A8NW-01 7 92235271 92235271 G A CDK6 3'UTR 0.18 TCGA-L5-A8NW-01 8 2065706 2065706 G A MYOM2 Missense_Mutation p.V1140I 0.36 tolerated(0.06) benign(0.019) TCGA-L5-A8NW-01 8 68044184 68044184 A G CSPP1 Splice_Site p.X561_splice 0.32 TCGA-L5-A8NW-01 8 75924743 75924743 T A CRISPLD1 Missense_Mutation p.L112M 0.16 tolerated(0.08) benign(0.209) TCGA-L5-A8NW-01 9 112899971 112899971 C T PALM2-AKAP2 Missense_Mutation p.T716I 0.33 deleterious(0) probably_damaging(0.999) TCGA-L5-A8NW-01 9 121930116 121930116 C T BRINP1 Missense_Mutation p.R511H 0.16 deleterious(0.05) probably_damaging(0.964) TCGA-L5-A8NW-01 9 125424901 125424901 T G OR1L1 Missense_Mutation p.L303V 0.32 tolerated(0.21) benign(0.103) TCGA-L5-A8NW-01 9 139944964 139944964 C T ENTPD2 Silent p.P267P 0.52 TCGA-L5-A8NW-01 9 140056471 140056471 C T GRIN1 Silent p.N542N 0.49 TCGA-L5-A8NW-01 9 17503840 17503840 A T CNTLN 3'UTR 0.56 TCGA-L5-A8NW-01 9 34371718 34371718 G A KIAA1161 Silent p.R374R 0.26 TCGA-L5-A8NW-01 9 35713962 35713962 T C TLN1 Silent p.L1079L 0.31 TCGA-L5-A8NW-01 9 36246411 36246411 C T GNE Missense_Mutation p.G109E 0.32 deleterious(0.04) probably_damaging(1) TCGA-L5-A8NW-01 9 36339284 36339284 C T RNF38 3'UTR 0.51 TCGA-L5-A8NW-01 9 43626718 43626718 A C SPATA31A6 Missense_Mutation p.F657V 0.45 deleterious(0.01) possibly_damaging(0.814) TCGA-L5-A8NW-01 9 74975126 74975126 C A ZFAND5 Missense_Mutation p.G55C 0.44 tolerated(0.11) possibly_damaging(0.598) TCGA-L5-A8NW-01 9 77112819 77112819 G A RORB 5'UTR 0.28 TCGA-L5-A8NW-01 X 100911645 100911645 G T ARMCX2 Silent p.G310G 0.71 TCGA-L5-A8NW-01 X 12739112 12739112 T C FRMPD4 3'UTR 0.72 TCGA-L5-A8NW-01 X 144909636 144909636 T C TMEM257 3'UTR 0.41 TCGA-L5-A8NW-01 X 152482748 152482748 G A MAGEA1 Missense_Mutation p.P88L 0.74 deleterious(0.05) possibly_damaging(0.842) TCGA-L5-A8NW-01 X 31152222 31152222 T G DMD Silent p.R3671R 0.78 TCGA-L5-A8NW-01 X 77913424 77913424 T A ZCCHC5 Missense_Mutation p.E165V 0.56 deleterious(0.01) benign(0.084) TCGA-L5-A8NW-01 X 80553062 80553062 A C SH3BGRL 3'UTR 0.40 TCGA-L5-A8NW-01 X 83599352 83599352 T A HDX Silent p.A522A 0.67 TCGA-L7-A56G-01 10 103870344 103870344 G A LDB1 Missense_Mutation p.S156F 0.59 tolerated(0.26) possibly_damaging(0.821) TCGA-L7-A56G-01 10 123970420 123970420 G C TACC2 Missense_Mutation p.E2160D 0.35 benign(0.442) TCGA-L7-A56G-01 10 29839859 29839859 G A SVIL Missense_Mutation p.S165F 0.14 deleterious(0.03) benign(0.432) TCGA-L7-A56G-01 10 48389039 48389039 G A RBP3 Silent p.P613P 0.16 TCGA-L7-A56G-01 10 70190195 70190195 G T DNA2 Missense_Mutation p.Q822K 0.15 tolerated(0.35) benign(0.041) TCGA-L7-A56G-01 10 73768109 73768109 G A CHST3 Silent p.V440V 0.08 TCGA-L7-A56G-01 10 81841942 81841943 - T TMEM254 Frame_Shift_Ins p.A79Cfs*8 0.18 TCGA-L7-A56G-01 11 100999704 100999704 G A PGR Missense_Mutation p.A33V 0.54 tolerated_low_confidence(0.05) benign(0.028) TCGA-L7-A56G-01 11 118981761 118981761 G A C2CD2L Splice_Site p.X228_splice 0.50 TCGA-L7-A56G-01 11 2979674 2979674 G C NAP1L4 Missense_Mutation p.Q283E 0.22 tolerated(0.38) benign(0.038) TCGA-L7-A56G-01 11 43918889 43918889 G A ALKBH3 Intron 0.42 TCGA-L7-A56G-01 11 47182927 47182927 T G C11orf49 Intron 0.10 TCGA-L7-A56G-01 11 64084959 64084959 G A TRMT112 Missense_Mutation p.R14W 0.33 deleterious(0) benign(0.035) TCGA-L7-A56G-01 11 96126297 96126297 T C JRKL 3'UTR 0.15 TCGA-L7-A56G-01 12 11061567 11061567 T C TAS2R13 Missense_Mutation p.I111V 0.57 deleterious(0) probably_damaging(0.979) TCGA-L7-A56G-01 12 45410052 45410052 C T DBX2 3'UTR 0.21 TCGA-L7-A56G-01 12 5024943 5024943 C T KCNA1 3'UTR 0.53 TCGA-L7-A56G-01 12 51142213 51142213 T A DIP2B 3'UTR 0.07 TCGA-L7-A56G-01 12 53690038 53690038 A G PFDN5 Silent p.L62L 0.47 TCGA-L7-A56G-01 12 57627050 57627050 C A SHMT2 Silent p.I315I 0.19 TCGA-L7-A56G-01 12 6566732 6566732 C T TAPBPL Silent p.T242T 0.21 TCGA-L7-A56G-01 12 7947704 7947704 C T NANOG 3'UTR 0.15 TCGA-L7-A56G-01 12 7947717 7947717 A G NANOG 3'UTR 0.17 TCGA-L7-A56G-01 12 9395192 9395192 C G LINC00987 RNA 0.20 TCGA-L7-A56G-01 14 22466186 22466186 C A TRAV17 Missense_Mutation p.A39D 0.27 tolerated(0.09) possibly_damaging(0.885) TCGA-L7-A56G-01 14 24880309 24880309 C T NYNRIN Silent p.C814C 0.14 TCGA-L7-A56G-01 14 65543336 65543336 T C MAX Missense_Mutation p.N114S 0.47 tolerated(0.34) benign(0.001) TCGA-L7-A56G-01 14 69255290 69255296 ATTAACT C ZFP36L1 3'UTR 0.21 TCGA-L7-A56G-01 15 34014941 34014941 C T RYR3 Silent p.S2215S 0.23 TCGA-L7-A56G-01 15 64005610 64005610 C T HERC1 Missense_Mutation p.E1469K 0.30 benign(0.008) TCGA-L7-A56G-01 15 79310155 79310155 G T RASGRF1 Nonsense_Mutation p.S567* 0.42 TCGA-L7-A56G-01 15 79590060 79590060 C T ANKRD34C 3'UTR 0.38 TCGA-L7-A56G-01 15 96877712 96877712 C T NR2F2 Missense_Mutation p.R284W 0.11 deleterious(0) probably_damaging(0.967) TCGA-L7-A56G-01 16 10855708 10855708 C T NUBP1 Missense_Mutation p.P271L 0.40 deleterious(0.01) probably_damaging(1) TCGA-L7-A56G-01 16 19485599 19485599 G A TMC5 Splice_Site p.X697_splice 0.07 TCGA-L7-A56G-01 16 31724621 31724621 G T ZNF720 5'UTR 0.14 TCGA-L7-A56G-01 16 67244286 67244286 C A LRRC29 5'UTR 0.38 TCGA-L7-A56G-01 16 77323161 77323161 C A ADAMTS18 Nonsense_Mutation p.E1184* 0.26 TCGA-L7-A56G-01 16 86546701 86546701 C T FOXF1 3'UTR 0.28 TCGA-L7-A56G-01 17 16827248 16827248 G A TBC1D27 RNA 0.12 TCGA-L7-A56G-01 17 19480714 19480714 A T SLC47A1 Missense_Mutation p.M521L 0.50 tolerated(0.76) benign(0.001) TCGA-L7-A56G-01 17 39671605 39671605 G A KRT15 Intron 0.23 TCGA-L7-A56G-01 17 61995831 61995831 G A GH1 Missense_Mutation p.L16F 0.08 deleterious(0) probably_damaging(1) TCGA-L7-A56G-01 17 68171465 68171465 A G KCNJ2 Silent p.S95S 0.37 TCGA-L7-A56G-01 17 72367895 72367895 C T GPR142 Missense_Mutation p.A182V 0.18 tolerated(0.06) benign(0.342) TCGA-L7-A56G-01 17 7577530 7577536 TGGGCCT AGGGAA TP53 Frame_Shift_Del p.R249Ffs*96 0.46 TCGA-L7-A56G-01 18 14184125 14184125 C A ANKRD20A5P Intron 0.16 TCGA-L7-A56G-01 19 15300089 15300089 G T NOTCH3 Missense_Mutation p.S396Y 0.51 deleterious(0) probably_damaging(1) TCGA-L7-A56G-01 19 15300181 15300181 G A NOTCH3 Silent p.I365I 0.52 TCGA-L7-A56G-01 19 15300208 15300208 G A NOTCH3 Silent p.V356V 0.50 TCGA-L7-A56G-01 19 15303192 15303192 G A NOTCH3 Silent p.F112F 0.57 TCGA-L7-A56G-01 19 16918782 16918782 C T NWD1 Silent p.Y1374Y 0.16 TCGA-L7-A56G-01 19 40006041 40006041 T C SELV Silent p.T63T 0.15 TCGA-L7-A56G-01 19 42259490 42259490 C T CEACAM6 5'UTR 0.13 TCGA-L7-A56G-01 19 45015728 45015728 C A CEACAM20 Intron 0.13 TCGA-L7-A56G-01 19 50376254 50376263 CTGGCCAGGG - AKT1S1 Frame_Shift_Del p.T117Kfs*31 0.47 TCGA-L7-A56G-01 19 54201690 54201690 A C MIR523 RNA 0.14 TCGA-L7-A56G-01 19 54201716 54201716 C A MIR523 RNA 0.08 TCGA-L7-A56G-01 19 56114128 56114128 C T ZNF524 Missense_Mutation p.A217V 0.32 tolerated(0.45) benign(0.11) TCGA-L7-A56G-01 1 111441937 111441937 G T CD53 3'UTR 0.21 TCGA-L7-A56G-01 1 161070556 161070556 C T PFDN2 Missense_Mutation p.G128R 0.06 deleterious(0) probably_damaging(0.927) TCGA-L7-A56G-01 1 22930078 22930078 C T EPHA8 3'UTR 0.18 TCGA-L7-A56G-01 1 248457987 248457987 G T OR2T12 Silent p.A298A 0.17 TCGA-L7-A56G-01 1 25718576 25718576 C T RHCE Silent p.L181L 0.35 TCGA-L7-A56G-01 1 50610816 50610816 T G ELAVL4 Missense_Mutation p.F83C 0.08 deleterious(0.02) probably_damaging(0.988) TCGA-L7-A56G-01 1 51864773 51864773 T G EPS15 Missense_Mutation p.Q661H 0.50 deleterious(0.01) probably_damaging(0.944) TCGA-L7-A56G-01 1 77748056 77748056 G T AK5 Nonsense_Mutation p.E20* 0.18 TCGA-L7-A56G-01 20 31984794 31984794 G A CDK5RAP1 Missense_Mutation p.S26L 0.19 tolerated_low_confidence(1) benign(0) TCGA-L7-A56G-01 20 58496487 58496487 C T SYCP2 Missense_Mutation p.D16N 0.40 tolerated(0.07) benign(0.171) TCGA-L7-A56G-01 22 21306663 21306663 C T CRKL 3'UTR 0.45 TCGA-L7-A56G-01 22 21538119 21538119 C T FAM230B RNA 0.15 TCGA-L7-A56G-01 22 23596130 23596130 A T BCR Missense_Mutation p.D475V 0.44 deleterious(0) probably_damaging(0.937) TCGA-L7-A56G-01 22 45593679 45593679 A C KIAA0930 Missense_Mutation p.I394S 0.20 deleterious(0) possibly_damaging(0.736) TCGA-L7-A56G-01 22 50316310 50316310 G A CRELD2 Missense_Mutation p.G264S 0.18 tolerated(0.73) benign(0.011) TCGA-L7-A56G-01 2 113007845 113007845 C A ZC3H8 Missense_Mutation p.D27Y 0.11 deleterious_low_confidence(0) benign(0.06) TCGA-L7-A56G-01 2 114340606 114340606 A T MIR1302-3 RNA 0.12 TCGA-L7-A56G-01 2 192820998 192820998 C T TMEFF2 Missense_Mutation p.M284I 0.31 tolerated(0.4) benign(0.006) TCGA-L7-A56G-01 2 3653823 3653823 C T COLEC11 Intron 0.19 TCGA-L7-A56G-01 2 43993451 43993451 G A PLEKHH2 3'UTR 0.13 TCGA-L7-A56G-01 2 46986968 46986968 G T SOCS5 Missense_Mutation p.W433C 0.27 deleterious(0) probably_damaging(0.995) TCGA-L7-A56G-01 2 56420246 56420246 C T CCDC85A Missense_Mutation p.T304M 0.11 tolerated_low_confidence(0.13) benign(0.03) TCGA-L7-A56G-01 2 74784044 74784044 A T DOK1 Missense_Mutation p.T417S 0.35 tolerated(0.58) benign(0.004) TCGA-L7-A56G-01 2 75118933 75118933 G A HK2 3'UTR 0.33 TCGA-L7-A56G-01 2 80875281 80875281 G T CTNNA2 3'UTR 0.21 TCGA-L7-A56G-01 2 96934194 96934194 G T CIAO1 Splice_Site p.X164_splice 0.30 TCGA-L7-A56G-01 3 11064120 11064120 T C SLC6A1 Missense_Mutation p.F227S 0.20 deleterious(0) probably_damaging(0.976) TCGA-L7-A56G-01 3 132423181 132423181 G C NPHP3 Missense_Mutation p.T462S 0.41 tolerated(0.84) benign(0) TCGA-L7-A56G-01 3 140692768 140692768 A G SLC25A36 Silent p.K221K 0.29 TCGA-L7-A56G-01 3 152884905 152884905 A G RAP2B 3'UTR 0.18 TCGA-L7-A56G-01 3 164905509 164905509 G A SLITRK3 3'UTR 0.12 TCGA-L7-A56G-01 3 168825727 168825727 T A MECOM Missense_Mutation p.D741V 0.19 tolerated(0.13) probably_damaging(0.931) TCGA-L7-A56G-01 3 183439772 183439772 A G YEATS2 Missense_Mutation p.R129G 0.48 tolerated(0.65) benign(0.001) TCGA-L7-A56G-01 3 184075627 184075627 G A CLCN2 Silent p.I211I 0.24 TCGA-L7-A56G-01 3 185866700 185866700 C G DGKG 3'UTR 0.27 TCGA-L7-A56G-01 3 50012786 50012786 A T RBM6 Missense_Mutation p.M482L 0.40 tolerated(0.52) benign(0.001) TCGA-L7-A56G-01 4 164394964 164394964 C T TKTL2 5'UTR 0.14 TCGA-L7-A56G-01 4 48850413 48850413 T C OCIAD1 Intron 0.26 TCGA-L7-A56G-01 4 54249970 54249970 A T FIP1L1 Missense_Mutation p.S87C 0.24 deleterious(0) probably_damaging(0.998) TCGA-L7-A56G-01 5 13766149 13766149 G C DNAH5 Missense_Mutation p.T3346S 0.08 benign(0) TCGA-L7-A56G-01 5 139941700 139941700 C T APBB3 Missense_Mutation p.G204E 0.13 deleterious(0) probably_damaging(1) TCGA-L7-A56G-01 5 140580326 140580326 C T PCDHB11 Missense_Mutation p.L327F 0.17 tolerated_low_confidence(0.07) probably_damaging(0.967) TCGA-L7-A56G-01 5 150310917 150310917 T - ZNF300P1 RNA 0.17 TCGA-L7-A56G-01 5 150923097 150923097 T C FAT2 Missense_Mutation p.I2531V 0.61 possibly_damaging(0.576) TCGA-L7-A56G-01 5 158158087 158158087 C T EBF1 Missense_Mutation p.R372H 0.34 deleterious(0) probably_damaging(0.926) TCGA-L7-A56G-01 5 41160290 41160290 G C C6 Silent p.G546G 0.13 TCGA-L7-A56G-01 5 52370296 52370296 A G ITGA2 Missense_Mutation p.R885G 0.47 tolerated(0.37) benign(0.047) TCGA-L7-A56G-01 5 68396658 68396658 A G SLC30A5 Silent p.L36L 0.64 TCGA-L7-A56G-01 6 137041712 137041712 T A MAP3K5 Missense_Mutation p.E155V 0.23 deleterious(0) possibly_damaging(0.601) TCGA-L7-A56G-01 6 147583481 147583481 G A STXBP5 Missense_Mutation p.E208K 0.20 tolerated(0.1) benign(0.124) TCGA-L7-A56G-01 6 169622459 169622459 G A THBS2 Missense_Mutation p.R1036C 0.21 deleterious(0) probably_damaging(0.997) TCGA-L7-A56G-01 6 18223402 18223402 T C KDM1B 3'UTR 0.33 TCGA-L7-A56G-01 6 30862388 30862388 C T DDR1 Nonsense_Mutation p.Q485* 0.33 TCGA-L7-A56G-01 6 38743675 38743675 C G DNAH8 Missense_Mutation p.T420R 0.09 benign(0.012) TCGA-L7-A56G-01 6 74446224 74446224 A G CD109 Missense_Mutation p.Q209R 0.12 tolerated(0.16) benign(0.012) TCGA-L7-A56G-01 7 27213291 27213291 C T HOXA10 Missense_Mutation p.G212D 0.16 deleterious(0) probably_damaging(0.995) TCGA-L7-A56G-01 7 64168085 64168085 A T ZNF107 Missense_Mutation p.Y468F 0.49 tolerated(0.1) benign(0.258) TCGA-L7-A56G-01 7 825232 825232 C T HEATR2 Missense_Mutation p.S837L 0.14 deleterious(0) possibly_damaging(0.892) TCGA-L7-A56G-01 8 121262859 121262859 C T COL14A1 Missense_Mutation p.P869L 0.14 tolerated(0.06) benign(0.115) TCGA-L7-A56G-01 8 131124422 131124422 C T ASAP1 Silent p.Q773Q 0.15 TCGA-L7-A56G-01 8 133859007 133859007 A G PHF20L1 3'UTR 0.34 TCGA-L7-A56G-01 8 144900169 144900169 C T PUF60 Missense_Mutation p.R227H 0.23 deleterious(0) benign(0.438) TCGA-L7-A56G-01 8 59718253 59718253 A - TOX 3'UTR 0.32 TCGA-L7-A56G-01 8 91962058 91962058 A T NECAB1 Missense_Mutation p.N295I 0.07 deleterious(0) possibly_damaging(0.603) TCGA-L7-A56G-01 8 92972690 92972690 G A RUNX1T1 Missense_Mutation p.A543V 0.08 deleterious(0) probably_damaging(0.961) TCGA-L7-A56G-01 8 95844270 95844270 A G INTS8 Silent p.K207K 0.35 TCGA-L7-A56G-01 9 37518154 37518154 C T FBXO10 Missense_Mutation p.G828R 0.29 deleterious(0) probably_damaging(0.998) TCGA-L7-A56G-01 9 73151532 73151532 G C TRPM3 Missense_Mutation p.D1487E 0.56 tolerated_low_confidence(0.07) benign(0.034) TCGA-L7-A56G-01 X 37029350 37029350 C T FAM47C Missense_Mutation p.P956L 0.69 deleterious(0) probably_damaging(0.977) TCGA-L7-A56G-01 X 70787359 70787359 C T OGT Missense_Mutation p.R867C 0.68 deleterious(0) probably_damaging(0.969) TCGA-L7-A56G-01 X 71802435 71802435 T - PHKA1 Frame_Shift_Del p.E1104Gfs*12 0.67 TCGA-L7-A6VZ-01 10 118031698 118031698 C G GFRA1 5'UTR 0.36 TCGA-L7-A6VZ-01 10 22030982 22030982 T C MLLT10 3'UTR 0.04 TCGA-L7-A6VZ-01 10 37505290 37505290 A C ANKRD30A Missense_Mutation p.K961N 0.43 tolerated(0.08) possibly_damaging(0.788) TCGA-L7-A6VZ-01 10 45953829 45953829 C T MARCH8 Missense_Mutation p.S245N 0.06 tolerated(0.15) benign(0.048) TCGA-L7-A6VZ-01 10 50340060 50340060 G A FAM170B Silent p.N150N 0.33 TCGA-L7-A6VZ-01 10 68858222 68858223 - A LRRTM3 3'UTR 0.33 TCGA-L7-A6VZ-01 10 99125868 99125868 T G RRP12 Missense_Mutation p.K1172Q 0.30 deleterious(0.03) benign(0.007) TCGA-L7-A6VZ-01 11 122817347 122817347 G A C11orf63 Silent p.T592T 0.53 TCGA-L7-A6VZ-01 11 1264031 1264031 C A MUC5B Missense_Mutation p.T1974K 0.80 unknown(0) TCGA-L7-A6VZ-01 11 20136187 20136187 A G NAV2 Missense_Mutation p.D2396G 0.78 tolerated(0.21) possibly_damaging(0.574) TCGA-L7-A6VZ-01 11 428561 428561 C T ANO9 Missense_Mutation p.V367M 0.08 tolerated(0.11) benign(0.243) TCGA-L7-A6VZ-01 11 4842957 4842957 G A OR51F2 Silent p.Q114Q 0.26 TCGA-L7-A6VZ-01 11 5290815 5290815 T G HBE1 Missense_Mutation p.K62Q 0.30 tolerated(0.21) possibly_damaging(0.663) TCGA-L7-A6VZ-01 11 55595176 55595176 C T OR5L2 Missense_Mutation p.S161F 0.67 deleterious(0.03) benign(0.226) TCGA-L7-A6VZ-01 11 78380678 78380678 G A TENM4 Missense_Mutation p.R2238W 0.80 deleterious(0) probably_damaging(0.974) TCGA-L7-A6VZ-01 11 89537238 89537238 C T TRIM49 Missense_Mutation p.E134K 0.37 deleterious(0.02) benign(0.031) TCGA-L7-A6VZ-01 12 100433495 100433495 C T UHRF1BP1L Missense_Mutation p.G1385E 0.16 tolerated(0.61) benign(0.001) TCGA-L7-A6VZ-01 12 104682731 104682731 A C TXNRD1 Silent p.G109G 0.36 TCGA-L7-A6VZ-01 12 20833658 20833658 C T PDE3A 3'UTR 0.46 TCGA-L7-A6VZ-01 12 4410163 4410163 C T CCND2 3'UTR 0.31 TCGA-L7-A6VZ-01 12 48080646 48080646 T C RPAP3 Silent p.E303E 0.52 TCGA-L7-A6VZ-01 12 50869876 50869876 C T LARP4 3'UTR 0.07 TCGA-L7-A6VZ-01 12 52862909 52862909 G A KRT6C Silent p.G544G 0.44 TCGA-L7-A6VZ-01 12 54449291 54449292 - A HOXC4 3'UTR 0.35 TCGA-L7-A6VZ-01 12 54785038 54785038 C G ZNF385A 5'UTR 0.64 TCGA-L7-A6VZ-01 12 6167091 6167091 G A VWF Silent p.N551N 0.59 TCGA-L7-A6VZ-01 12 62783638 62783638 A T USP15 Nonsense_Mutation p.R572* 0.43 TCGA-L7-A6VZ-01 12 78574825 78574825 G C NAV3 Missense_Mutation p.D1876H 0.48 deleterious(0) possibly_damaging(0.804) TCGA-L7-A6VZ-01 13 101936359 101936359 T G NALCN Missense_Mutation p.E353D 0.63 tolerated(0.53) benign(0.01) TCGA-L7-A6VZ-01 13 113980051 113980051 G T GRTP1 Missense_Mutation p.S282R 0.24 deleterious(0.02) possibly_damaging(0.772) TCGA-L7-A6VZ-01 13 99092216 99092216 T C FARP1 Missense_Mutation p.I812T 0.78 tolerated(0.06) benign(0.032) TCGA-L7-A6VZ-01 14 106845532 106845532 A C IGHV3-35 Missense_Mutation p.F48V 0.20 deleterious_low_confidence(0.03) benign(0.246) TCGA-L7-A6VZ-01 14 106967450 106967450 G T IGHV1-46 Missense_Mutation p.A12D 0.41 deleterious(0) probably_damaging(0.93) TCGA-L7-A6VZ-01 14 22386876 22386876 G A TRAV13-2 Silent p.L95L 0.61 TCGA-L7-A6VZ-01 14 42355887 42355887 G T LRFN5 Missense_Mutation p.C20F 0.50 deleterious(0) probably_damaging(0.999) TCGA-L7-A6VZ-01 14 80328022 80328022 G A NRXN3 Silent p.P967P 0.60 TCGA-L7-A6VZ-01 15 22383120 22383120 T G OR4N4 Silent p.A216A 0.10 TCGA-L7-A6VZ-01 15 25339273 25339273 T C SNORD116-24 RNA 0.21 TCGA-L7-A6VZ-01 15 25420072 25420072 T A SNORD115-3 5'Flank 0.52 TCGA-L7-A6VZ-01 15 26790805 26790805 T - GABRB3 3'UTR 0.27 TCGA-L7-A6VZ-01 15 32460285 32460285 G A CHRNA7 Missense_Mutation p.A408T 0.20 tolerated(0.66) benign(0.002) TCGA-L7-A6VZ-01 15 50569981 50569981 G A GABPB1 3'UTR 0.11 TCGA-L7-A6VZ-01 16 25703882 25703882 G A HS3ST4 Silent p.L48L 0.18 TCGA-L7-A6VZ-01 16 31012923 31012923 G A STX1B Missense_Mutation p.A11V 0.41 tolerated(0.19) benign(0.012) TCGA-L7-A6VZ-01 16 32889061 32889061 C A SLC6A10P RNA 0.10 TCGA-L7-A6VZ-01 16 3458450 3458450 C A ZNF174 Missense_Mutation p.A252E 0.39 tolerated(0.2) benign(0.003) TCGA-L7-A6VZ-01 16 48368268 48368268 A T LONP2 Missense_Mutation p.E646V 0.56 deleterious(0) probably_damaging(0.997) TCGA-L7-A6VZ-01 16 4933515 4933515 T A PPL Missense_Mutation p.K1714M 0.43 deleterious(0) probably_damaging(0.968) TCGA-L7-A6VZ-01 16 57054745 57054745 C T NLRC5 Silent p.L41L 0.86 TCGA-L7-A6VZ-01 16 64980696 64980696 T - CDH11 3'UTR 0.28 TCGA-L7-A6VZ-01 16 66647192 66647192 G A CMTM3 3'UTR 0.62 TCGA-L7-A6VZ-01 17 38512928 38512928 G T RARA 3'UTR 0.29 TCGA-L7-A6VZ-01 17 40312050 40312050 G A KCNH4 3'UTR 0.36 TCGA-L7-A6VZ-01 17 42275036 42275036 C A ATXN7L3 Missense_Mutation p.E38D 0.09 tolerated(0.25) benign(0.101) TCGA-L7-A6VZ-01 17 50235181 50235181 G A CA10 5'UTR 0.17 TCGA-L7-A6VZ-01 17 60020030 60020030 T A MED13 3'UTR 0.18 TCGA-L7-A6VZ-01 17 60813487 60813487 G C MARCH10 Nonsense_Mutation p.S581* 0.11 TCGA-L7-A6VZ-01 17 62019124 62019124 G A SCN4A Silent p.Y1506Y 0.25 TCGA-L7-A6VZ-01 17 63052436 63052436 C T GNA13 Silent p.V92V 0.13 TCGA-L7-A6VZ-01 17 66871852 66871852 T G ABCA8 Silent p.R1425R 0.44 TCGA-L7-A6VZ-01 17 73774414 73774415 - A H3F3B 3'UTR 0.29 TCGA-L7-A6VZ-01 17 7578502 7578502 A G TP53 Missense_Mutation p.V143A 0.50 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 17 76570976 76570976 G A DNAH17 Missense_Mutation p.T55M 0.24 possibly_damaging(0.555) TCGA-L7-A6VZ-01 17 79769647 79769647 G A GCGR Missense_Mutation p.E260K 0.28 deleterious(0.02) possibly_damaging(0.458) TCGA-L7-A6VZ-01 18 13646884 13646884 A C LDLRAD4 3'UTR 0.38 TCGA-L7-A6VZ-01 18 13885085 13885085 G A MC2R Missense_Mutation p.R145C 0.31 deleterious(0.03) probably_damaging(0.915) TCGA-L7-A6VZ-01 18 43458346 43458346 G A EPG5 Silent p.N1979N 0.66 TCGA-L7-A6VZ-01 18 6993683 6993683 T C LAMA1 Silent p.Q1655Q 0.55 TCGA-L7-A6VZ-01 19 1109592 1109592 G A SBNO2 Silent p.S1043S 0.25 TCGA-L7-A6VZ-01 19 11352209 11352209 G A C19orf80 Missense_Mutation p.R183Q 0.23 tolerated(0.49) benign(0.011) TCGA-L7-A6VZ-01 19 15990453 15990453 G A CYP4F2 Silent p.F425F 0.44 TCGA-L7-A6VZ-01 19 21990665 21990665 T G ZNF43 Missense_Mutation p.K725T 0.43 deleterious(0.04) possibly_damaging(0.893) TCGA-L7-A6VZ-01 19 2853573 2853573 G A ZNF555 Missense_Mutation p.A504T 0.33 deleterious(0.04) benign(0.018) TCGA-L7-A6VZ-01 19 37064222 37064222 A C ZNF529 5'Flank 0.29 TCGA-L7-A6VZ-01 19 41939249 41939249 G A ATP5SL Missense_Mutation p.S181L 0.07 deleterious(0) probably_damaging(0.959) TCGA-L7-A6VZ-01 19 50985172 50985172 C T EMC10 Intron 0.18 TCGA-L7-A6VZ-01 19 5455855 5455855 C T ZNRF4 Missense_Mutation p.A118V 0.12 deleterious(0) probably_damaging(0.999) TCGA-L7-A6VZ-01 19 55673609 55673609 C T DNAAF3 Silent p.P192P 0.37 TCGA-L7-A6VZ-01 19 57641629 57641629 T G USP29 Missense_Mutation p.V529G 0.31 deleterious(0) possibly_damaging(0.781) TCGA-L7-A6VZ-01 19 58718333 58718333 G A ZNF274 Missense_Mutation p.R168H 0.23 tolerated(0.23) benign(0.001) TCGA-L7-A6VZ-01 19 6222526 6222526 G A MLLT1 Missense_Mutation p.P239L 0.12 tolerated(0.26) benign(0.085) TCGA-L7-A6VZ-01 19 8601256 8601256 C T MYO1F Silent p.T641T 0.47 TCGA-L7-A6VZ-01 19 9067010 9067010 A T MUC16 Silent p.T6812T 0.32 TCGA-L7-A6VZ-01 19 9075457 9075457 T G MUC16 Missense_Mutation p.T3997P 0.22 unknown(0) TCGA-L7-A6VZ-01 1 112003600 112003600 C T ATP5F1 Missense_Mutation p.A252V 0.32 tolerated(0.05) benign(0.043) TCGA-L7-A6VZ-01 1 13001330 13001330 T G PRAMEF6 Missense_Mutation p.E118A 0.19 deleterious(0) benign(0.384) TCGA-L7-A6VZ-01 1 13718575 13718575 A C PRAMEF17 Missense_Mutation p.K346N 0.61 deleterious(0.03) possibly_damaging(0.749) TCGA-L7-A6VZ-01 1 13839512 13839513 CA - LRRC38 Nonsense_Mutation p.C192* 0.27 TCGA-L7-A6VZ-01 1 1500170 1500172 AAG - SSU72 In_Frame_Del p.L69del 0.26 TCGA-L7-A6VZ-01 1 152882718 152882718 A G IVL Missense_Mutation p.K149E 0.50 tolerated_low_confidence(0.15) unknown(0) TCGA-L7-A6VZ-01 1 186030997 186030997 C T HMCN1 Missense_Mutation p.R2443W 0.55 probably_damaging(0.999) TCGA-L7-A6VZ-01 1 2234478 2234478 C A SKI Missense_Mutation p.P344H 0.10 tolerated(0.09) probably_damaging(0.969) TCGA-L7-A6VZ-01 1 227504836 227504836 G T CDC42BPA Missense_Mutation p.D16E 0.57 deleterious(0.04) benign(0.027) TCGA-L7-A6VZ-01 1 228285661 228285661 G A ARF1 Missense_Mutation p.G165R 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-L7-A6VZ-01 1 233134179 233134179 C T PCNXL2 Missense_Mutation p.R1870Q 0.39 tolerated(0.17) benign(0.356) TCGA-L7-A6VZ-01 1 36814305 36814305 G A STK40 Silent p.L245L 0.62 TCGA-L7-A6VZ-01 1 58946792 58946792 G A OMA1 Nonsense_Mutation p.R474* 0.44 TCGA-L7-A6VZ-01 1 99772857 99772857 T G LPPR4 3'UTR 0.23 TCGA-L7-A6VZ-01 20 15967782 15967782 G C MACROD2 Missense_Mutation p.E378Q 0.21 deleterious_low_confidence(0.03) benign(0.081) TCGA-L7-A6VZ-01 20 2776703 2776703 G A CPXM1 Silent p.D449D 0.37 TCGA-L7-A6VZ-01 20 40864897 40864897 T G PTPRT Silent p.R772R 0.26 TCGA-L7-A6VZ-01 20 57766949 57766949 C T ZNF831 Missense_Mutation p.A292V 0.16 tolerated(0.23) benign(0.001) TCGA-L7-A6VZ-01 21 10944701 10944702 - C TPTE Frame_Shift_Ins p.F178Cfs*3 0.23 TCGA-L7-A6VZ-01 21 11097578 11097578 G T BAGE2 RNA 0.18 TCGA-L7-A6VZ-01 21 19190565 19190565 C G C21orf91 Missense_Mutation p.G24A 0.56 tolerated(0.54) possibly_damaging(0.638) TCGA-L7-A6VZ-01 21 31869393 31869393 G T KRTAP19-4 Silent p.G12G 0.72 TCGA-L7-A6VZ-01 22 16279279 16279279 A C POTEH Missense_Mutation p.L315R 0.10 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 22 36139980 36139980 T A RBFOX2 3'Flank 0.64 TCGA-L7-A6VZ-01 22 37768294 37768294 C A ELFN2 3'UTR 0.19 TCGA-L7-A6VZ-01 2 107460353 107460353 G T ST6GAL2 Missense_Mutation p.F27L 0.31 benign(0.261) TCGA-L7-A6VZ-01 2 141081604 141081604 A G LRP1B Silent p.F4124F 0.41 TCGA-L7-A6VZ-01 2 177015141 177015141 C T HOXD3 5'UTR 0.28 TCGA-L7-A6VZ-01 2 179170879 179170879 T C OSBPL6 5'UTR 0.53 TCGA-L7-A6VZ-01 2 179431031 179431031 C A TTN Missense_Mutation p.A26610S 0.26 TCGA-L7-A6VZ-01 2 179479678 179479678 A C TTN Missense_Mutation p.L16219R 0.40 TCGA-L7-A6VZ-01 2 1794912 1794912 A C MYT1L 3'Flank 0.32 TCGA-L7-A6VZ-01 2 179501287 179501287 C T TTN Missense_Mutation p.G13723S 0.42 TCGA-L7-A6VZ-01 2 17998337 17998337 C T MSGN1 Silent p.R184R 0.53 TCGA-L7-A6VZ-01 2 189873924 189873924 T A COL3A1 Missense_Mutation p.F1267Y 0.54 unknown(0) TCGA-L7-A6VZ-01 2 191835413 191835414 - A STAT1 3'UTR 0.38 TCGA-L7-A6VZ-01 2 231235679 231235679 A G SP140L Missense_Mutation p.M194V 0.23 tolerated(0.19) benign(0.002) TCGA-L7-A6VZ-01 2 242170310 242170310 G A HDLBP Missense_Mutation p.A1113V 0.39 deleterious(0) probably_damaging(0.997) TCGA-L7-A6VZ-01 2 37230810 37230810 A T HEATR5B Missense_Mutation p.L1642Q 0.17 deleterious(0) probably_damaging(0.998) TCGA-L7-A6VZ-01 2 44170940 44170940 G A LRPPRC Missense_Mutation p.A797V 0.21 deleterious(0.03) probably_damaging(0.998) TCGA-L7-A6VZ-01 2 46574120 46574120 C A EPAS1 Missense_Mutation p.H45Q 0.20 tolerated(0.06) benign(0.025) TCGA-L7-A6VZ-01 2 55591107 55591107 C T CCDC88A Silent p.A155A 0.25 TCGA-L7-A6VZ-01 2 6112394 6112394 A G DKFZP761K2322 Missense_Mutation p.Q113R 0.26 benign(0.151) TCGA-L7-A6VZ-01 2 63660881 63660881 C T WDPCP Missense_Mutation p.E275K 0.24 tolerated(0.2) possibly_damaging(0.609) TCGA-L7-A6VZ-01 2 68402079 68402082 AAAG - PNO1 3'UTR 0.46 TCGA-L7-A6VZ-01 2 77746589 77746589 G A LRRTM4 Missense_Mutation p.R136C 0.56 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 2 80085246 80085246 C T CTNNA2 Missense_Mutation p.R136C 0.26 deleterious(0) probably_damaging(0.983) TCGA-L7-A6VZ-01 2 85049137 85049137 G A TRABD2A Silent p.H425H 0.23 TCGA-L7-A6VZ-01 2 87012869 87012869 G C CD8A 3'UTR 0.14 TCGA-L7-A6VZ-01 3 121230840 121230840 G C POLQ Nonsense_Mutation p.S502* 0.26 TCGA-L7-A6VZ-01 3 121591470 121591470 G A EAF2 Missense_Mutation p.E191K 0.44 tolerated(0.06) benign(0.016) TCGA-L7-A6VZ-01 3 123049811 123049811 G A ADCY5 Missense_Mutation p.S524L 0.38 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 3 126180375 126180375 T C ZXDC Intron 0.38 TCGA-L7-A6VZ-01 3 150784178 150784178 G A CLRN1-AS1 RNA 0.38 TCGA-L7-A6VZ-01 3 15084803 15084803 G A NR2C2 3'UTR 0.29 TCGA-L7-A6VZ-01 3 15113420 15113420 G A ZFYVE20 3'UTR 0.12 TCGA-L7-A6VZ-01 3 36587850 36587850 G A STAC 3'UTR 0.52 TCGA-L7-A6VZ-01 3 37381677 37381677 G A GOLGA4 Silent p.G2168G 0.43 TCGA-L7-A6VZ-01 3 52485526 52485526 A G TNNC1 Missense_Mutation p.I112T 0.40 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 3 74419075 74419075 A C CNTN3 Silent p.G242G 0.38 TCGA-L7-A6VZ-01 4 175897651 175897651 T G ADAM29 Silent p.T325T 0.70 TCGA-L7-A6VZ-01 4 186295346 186295346 C A LRP2BP Missense_Mutation p.K174N 0.60 deleterious(0) probably_damaging(0.996) TCGA-L7-A6VZ-01 4 66467471 66467471 A G EPHA5 Silent p.S266S 0.59 TCGA-L7-A6VZ-01 5 114604588 114604589 - T CCDC112 Frame_Shift_Ins p.I513Nfs*4 0.19 TCGA-L7-A6VZ-01 5 126769130 126769130 G T MEGF10 Missense_Mutation p.G590V 0.54 deleterious(0) probably_damaging(0.99) TCGA-L7-A6VZ-01 5 131972884 131972884 G A RAD50 Missense_Mutation p.R1156H 0.07 deleterious(0.01) possibly_damaging(0.879) TCGA-L7-A6VZ-01 5 13810212 13810212 G A DNAH5 Missense_Mutation p.A2522V 0.10 benign(0.004) TCGA-L7-A6VZ-01 5 13914697 13914697 C T DNAH5 Missense_Mutation p.A418T 0.27 possibly_damaging(0.798) TCGA-L7-A6VZ-01 5 140746060 140746060 G A PCDHGA5 Silent p.K721K 0.54 TCGA-L7-A6VZ-01 5 153026596 153026596 C T GRIA1 Missense_Mutation p.T120M 0.59 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 5 161113276 161113276 T G GABRA6 Missense_Mutation p.F27V 0.44 tolerated(0.55) benign(0.022) TCGA-L7-A6VZ-01 5 161116331 161116331 A C GABRA6 Missense_Mutation p.K173T 0.20 tolerated(0.08) probably_damaging(0.999) TCGA-L7-A6VZ-01 5 169186770 169186770 A C DOCK2 Missense_Mutation p.K813T 0.56 tolerated(0.31) benign(0.011) TCGA-L7-A6VZ-01 5 176950989 176950989 C T FAM193B Missense_Mutation p.E781K 0.60 deleterious(0) probably_damaging(0.998) TCGA-L7-A6VZ-01 5 66430374 66430403 TGCACCAGAAGTGATTCTGAGGCAGGGTTA - MAST4 In_Frame_Del p.A751_Y760del 0.16 TCGA-L7-A6VZ-01 5 78378654 78378654 C A BHMT2 Missense_Mutation p.A158D 0.23 deleterious(0) probably_damaging(0.948) TCGA-L7-A6VZ-01 5 79617017 79617017 G T SPZ1 Missense_Mutation p.C328F 0.35 deleterious(0) probably_damaging(0.999) TCGA-L7-A6VZ-01 6 110729555 110729555 C T DDO Missense_Mutation p.G116D 0.42 deleterious(0) probably_damaging(0.996) TCGA-L7-A6VZ-01 6 127517998 127517998 A C RSPO3 3'UTR 0.62 TCGA-L7-A6VZ-01 6 153073408 153073408 T G VIP Silent p.P32P 0.42 TCGA-L7-A6VZ-01 6 160176454 160176454 G A WTAP Silent p.A334A 0.49 TCGA-L7-A6VZ-01 6 34029734 34029734 G A GRM4 Missense_Mutation p.R270C 0.88 deleterious(0) benign(0.011) TCGA-L7-A6VZ-01 6 36238358 36238358 G A PNPLA1 Missense_Mutation p.R41Q 0.69 tolerated(0.1) probably_damaging(0.978) TCGA-L7-A6VZ-01 6 394896 394896 C T IRF4 Missense_Mutation p.R98W 0.34 deleterious(0) probably_damaging(0.998) TCGA-L7-A6VZ-01 6 39864622 39864622 C G DAAM2 Missense_Mutation p.S792R 0.17 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 6 43253471 43253471 C T TTBK1 3'UTR 0.10 TCGA-L7-A6VZ-01 6 65767617 65767617 G A EYS Missense_Mutation p.T676M 0.32 tolerated(0.22) benign(0.356) TCGA-L7-A6VZ-01 6 96660410 96660410 G A FUT9 3'UTR 0.58 TCGA-L7-A6VZ-01 7 100816688 100816688 G A NAT16 Silent p.F142F 0.47 TCGA-L7-A6VZ-01 7 19184740 19184740 G A FERD3L Silent p.R82R 0.24 TCGA-L7-A6VZ-01 7 21938963 21938963 C T DNAH11 Silent p.D4360D 0.10 TCGA-L7-A6VZ-01 7 63982352 63982352 A G ZNF680 Silent p.H260H 0.47 TCGA-L7-A6VZ-01 7 70597831 70597831 T G WBSCR17 Missense_Mutation p.L15V 0.39 tolerated_low_confidence(0.3) possibly_damaging(0.636) TCGA-L7-A6VZ-01 7 73114766 73114766 C T STX1A Missense_Mutation p.A280T 0.45 deleterious(0.01) possibly_damaging(0.879) TCGA-L7-A6VZ-01 7 7917073 7917073 C G RPA3-AS1 Missense_Mutation p.D71E 0.44 tolerated(0.47) probably_damaging(0.921) TCGA-L7-A6VZ-01 7 82453549 82453549 T C PCLO Intron 0.27 TCGA-L7-A6VZ-01 7 82585002 82585002 C T PCLO Missense_Mutation p.R1756H 0.32 unknown(0) TCGA-L7-A6VZ-01 8 128428573 128428573 G A POU5F1B Silent p.K154K 0.25 TCGA-L7-A6VZ-01 8 132052057 132052057 A C ADCY8 Missense_Mutation p.L175V 0.17 tolerated(0.62) possibly_damaging(0.522) TCGA-L7-A6VZ-01 8 134034313 134034313 C T TG Silent p.D2318D 0.71 TCGA-L7-A6VZ-01 8 141810606 141810606 G A PTK2 Missense_Mutation p.R349W 0.07 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 8 75148905 75148906 - C JPH1 3'UTR 0.22 TCGA-L7-A6VZ-01 8 86573068 86573068 G A REXO1L1P 3'UTR 0.19 TCGA-L7-A6VZ-01 9 131670745 131670745 G T LRRC8A Missense_Mutation p.M434I 0.25 deleterious(0) possibly_damaging(0.838) TCGA-L7-A6VZ-01 9 131679757 131679757 C T LRRC8A 3'UTR 0.38 TCGA-L7-A6VZ-01 9 137987773 137987773 G A OLFM1 Missense_Mutation p.V104M 0.10 deleterious(0.02) benign(0.031) TCGA-L7-A6VZ-01 9 140245931 140245931 G A EXD3 Missense_Mutation p.A408V 0.20 tolerated(0.27) benign(0.018) TCGA-L7-A6VZ-01 9 21974676 21974676 C A CDKN2A Splice_Site p.X50_splice 0.72 TCGA-L7-A6VZ-01 9 77301646 77301646 A C RORB 3'UTR 0.15 TCGA-L7-A6VZ-01 9 77377027 77377027 C A TRPM6 Missense_Mutation p.Q1520H 0.11 tolerated_low_confidence(0.12) benign(0.008) TCGA-L7-A6VZ-01 9 91608103 91608103 G A C9orf47 3'UTR 0.73 TCGA-L7-A6VZ-01 X 102192431 102192431 G C RAB40AL Missense_Mutation p.R62P 0.43 deleterious(0) probably_damaging(1) TCGA-L7-A6VZ-01 X 135955691 135955691 G T RBMX 3'UTR 0.24 TCGA-L7-A6VZ-01 X 153134317 153134317 G A L1CAM Missense_Mutation p.A453V 0.94 tolerated(0.19) benign(0.182) TCGA-L7-A6VZ-01 X 49105333 49105333 G T CCDC22 Missense_Mutation p.R496L 0.17 deleterious(0) probably_damaging(0.982) TCGA-L7-A6VZ-01 X 64718911 64718911 A G ZC3H12B Missense_Mutation p.K261E 0.77 deleterious(0) probably_damaging(0.988) TCGA-L7-A6VZ-01 X 76711854 76711854 G A FGF16 Silent p.S64S 0.29 TCGA-L7-A6VZ-01 X 84563182 84563182 G C POF1B Missense_Mutation p.S333C 0.80 deleterious(0) probably_damaging(0.999) TCGA-LN-A49K-01 10 16553219 16553219 A - PTER Frame_Shift_Del p.I339* 0.10 TCGA-LN-A49K-01 10 27538827 27538827 T C RP11-85G18.6 Intron 0.10 TCGA-LN-A49K-01 10 28196695 28196695 C T ARMC4 Missense_Mutation p.R836H 0.45 tolerated(0.13) benign(0.052) TCGA-LN-A49K-01 11 105948408 105948408 C T AASDHPPT 5'UTR 0.17 TCGA-LN-A49K-01 11 120831733 120831733 G A GRIK4 Missense_Mutation p.A664T 0.26 tolerated(0.14) benign(0.007) TCGA-LN-A49K-01 11 30358340 30358340 T A ARL14EP Nonstop_Mutation p.*261Kext*15 0.43 TCGA-LN-A49K-01 11 46563800 46563800 A G AMBRA1 Silent p.P499P 0.24 TCGA-LN-A49K-01 11 59997541 59997541 G T MS4A4E 5'Flank 0.45 TCGA-LN-A49K-01 11 61502404 61502404 C T DAGLA Missense_Mutation p.A353V 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-LN-A49K-01 11 62397743 62397743 C A GANAB Missense_Mutation p.A529S 0.19 tolerated(1) benign(0.009) TCGA-LN-A49K-01 11 64109782 64109782 C A CCDC88B Missense_Mutation p.L280M 0.11 tolerated(0.21) benign(0.238) TCGA-LN-A49K-01 11 77885236 77885236 G A KCTD21 Missense_Mutation p.T122M 0.19 tolerated(0.19) benign(0.001) TCGA-LN-A49K-01 11 7949463 7949463 G C OR10A6 Silent p.T249T 0.22 TCGA-LN-A49K-01 11 82611294 82611294 G A PRCP Missense_Mutation p.L51F 0.15 tolerated_low_confidence(0.47) benign(0.003) TCGA-LN-A49K-01 12 15710404 15710404 T C PTPRO Silent p.G858G 0.30 TCGA-LN-A49K-01 12 21349897 21349897 C T SLCO1B1 Missense_Mutation p.P249S 0.40 deleterious(0.02) probably_damaging(0.941) TCGA-LN-A49K-01 12 43771250 43771250 G A ADAMTS20 Missense_Mutation p.P1638L 0.12 deleterious(0.04) possibly_damaging(0.86) TCGA-LN-A49K-01 12 5024612 5024612 G T KCNA1 3'UTR 0.18 TCGA-LN-A49K-01 13 22113447 22113447 C T MICU2 Missense_Mutation p.D154N 0.22 deleterious(0) probably_damaging(1) TCGA-LN-A49K-01 13 47011854 47011854 T A PPP1R2P4 RNA 0.23 TCGA-LN-A49K-01 14 102460527 102460527 G T DYNC1H1 Missense_Mutation p.V1008L 0.42 benign(0.002) TCGA-LN-A49K-01 14 21623754 21623754 G A OR5AU1 Missense_Mutation p.S144F 0.08 deleterious(0) possibly_damaging(0.754) TCGA-LN-A49K-01 14 47351393 47351393 A T MDGA2 Missense_Mutation p.I757N 0.30 deleterious(0) probably_damaging(0.999) TCGA-LN-A49K-01 14 60193708 60193708 G A RTN1 Missense_Mutation p.A565V 0.42 tolerated(0.54) benign(0) TCGA-LN-A49K-01 14 61788845 61788845 A G PRKCH Missense_Mutation p.N9S 0.44 tolerated(0.52) benign(0.013) TCGA-LN-A49K-01 14 66974716 66974716 T C GPHN 5'UTR 0.05 TCGA-LN-A49K-01 14 80677773 80677773 G T DIO2 Missense_Mutation p.L15M 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A49K-01 15 41829177 41829177 C T RPAP1 Silent p.P49P 0.14 TCGA-LN-A49K-01 15 65738879 65738879 C T DPP8 3'UTR 0.27 TCGA-LN-A49K-01 15 75668064 75668064 T C SIN3A Missense_Mutation p.Y1178C 0.15 deleterious(0) probably_damaging(0.968) TCGA-LN-A49K-01 16 18840639 18840639 T A SMG1 Missense_Mutation p.Q3191L 0.08 deleterious(0.04) possibly_damaging(0.728) TCGA-LN-A49K-01 16 19080091 19080091 T C COQ7 Intron 0.28 TCGA-LN-A49K-01 16 23584907 23584907 C T UBFD1 3'UTR 0.49 TCGA-LN-A49K-01 16 29756101 29756101 G A C16orf54 Missense_Mutation p.R58C 0.23 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-LN-A49K-01 16 30745119 30745119 G C SRCAP Missense_Mutation p.R2165T 0.41 possibly_damaging(0.766) TCGA-LN-A49K-01 16 32890602 32890602 C A SLC6A10P RNA 0.17 TCGA-LN-A49K-01 16 3807902 3807902 G A CREBBP Nonsense_Mutation p.R1173* 0.26 TCGA-LN-A49K-01 16 87451324 87451324 G A ZCCHC14 Silent p.I238I 0.08 TCGA-LN-A49K-01 17 19687150 19687150 C T ULK2 Missense_Mutation p.G774S 0.32 tolerated(0.11) benign(0.082) TCGA-LN-A49K-01 17 6546368 6546383 GTCCTGATTTGTTCTA - TXNDC17 3'UTR 0.28 TCGA-LN-A49K-01 17 72958339 72958339 C A HID1 Missense_Mutation p.D201Y 0.62 deleterious(0.03) benign(0.38) TCGA-LN-A49K-01 17 7579321 7579322 CA - TP53 Frame_Shift_Del p.V122Dfs*26 0.42 TCGA-LN-A49K-01 18 61077552 61077552 T C VPS4B Silent p.E89E 0.46 TCGA-LN-A49K-01 18 74536169 74536169 A G ZNF236 5'UTR 0.19 TCGA-LN-A49K-01 19 12490952 12490952 G A CTD-3105H18.14 3'UTR 0.11 TCGA-LN-A49K-01 19 1535315 1535315 C T PLK5 3'UTR 0.15 TCGA-LN-A49K-01 19 2997811 2997811 G A TLE2 3'UTR 0.11 TCGA-LN-A49K-01 19 36674504 36674504 C T ZNF565 Missense_Mutation p.E122K 0.38 tolerated(1) benign(0) TCGA-LN-A49K-01 19 40704382 40704382 G T MAP3K10 Missense_Mutation p.M261I 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-LN-A49K-01 19 41404105 41404105 C T CYP2G1P RNA 0.13 TCGA-LN-A49K-01 19 45801428 45801428 G C MARK4 Intron 0.26 TCGA-LN-A49K-01 19 46214661 46214662 GG - FBXO46 3'UTR 0.11 TCGA-LN-A49K-01 19 50951588 50951588 G A MYBPC2 Nonsense_Mutation p.W471* 0.09 TCGA-LN-A49K-01 19 52329039 52329040 - T FPR3 3'UTR 0.21 TCGA-LN-A49K-01 1 109811375 109811375 C T CELSR2 Missense_Mutation p.T2164M 0.49 deleterious(0) probably_damaging(0.996) TCGA-LN-A49K-01 1 113237086 113237086 G A MOV10 Missense_Mutation p.R436H 0.57 tolerated(0.06) benign(0.074) TCGA-LN-A49K-01 1 1412670 1412670 C T ATAD3B Silent p.A74A 0.51 TCGA-LN-A49K-01 1 148004386 148004386 G C NBPF14 3'UTR 0.27 TCGA-LN-A49K-01 1 158576618 158576618 C A OR10Z1 Silent p.L130L 0.33 TCGA-LN-A49K-01 1 161954722 161954722 T C OLFML2B Missense_Mutation p.N508S 0.32 deleterious(0.01) possibly_damaging(0.808) TCGA-LN-A49K-01 1 185946959 185946959 G A HMCN1 Missense_Mutation p.M804I 0.30 benign(0.005) TCGA-LN-A49K-01 1 193149736 193149736 A T B3GALT2 Missense_Mutation p.F319L 0.36 tolerated(0.09) benign(0.106) TCGA-LN-A49K-01 1 223983606 223983606 G T TP53BP2 Missense_Mutation p.P879T 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-LN-A49K-01 1 23687695 23687695 T C ZNF436 3'UTR 0.54 TCGA-LN-A49K-01 1 67855810 67855810 A - IL12RB2 Frame_Shift_Del p.E682Gfs*12 0.14 TCGA-LN-A49K-01 1 70504428 70504428 T A LRRC7 Missense_Mutation p.M936K 0.17 tolerated(0.12) probably_damaging(0.962) TCGA-LN-A49K-01 20 44538215 44538215 G T PLTP Missense_Mutation p.S142Y 0.17 deleterious(0.01) possibly_damaging(0.786) TCGA-LN-A49K-01 20 56935675 56935675 G C RAB22A 3'UTR 0.48 TCGA-LN-A49K-01 21 10933879 10933879 C T TPTE Missense_Mutation p.V334I 0.20 tolerated(1) benign(0.02) TCGA-LN-A49K-01 21 46226696 46226696 T G SUMO3 3'UTR 0.50 TCGA-LN-A49K-01 22 21348483 21348483 C T LZTR1 Missense_Mutation p.R514W 0.28 deleterious(0.02) possibly_damaging(0.882) TCGA-LN-A49K-01 22 31324086 31324086 C T MORC2 Missense_Mutation p.E922K 0.24 deleterious(0) possibly_damaging(0.711) TCGA-LN-A49K-01 22 47308003 47308003 C T TBC1D22A Missense_Mutation p.R312C 0.08 deleterious(0) probably_damaging(1) TCGA-LN-A49K-01 22 50167067 50167067 A C BRD1 3'UTR 0.50 TCGA-LN-A49K-01 2 120194908 120194908 C T TMEM37 Silent p.L155L 0.28 TCGA-LN-A49K-01 2 170030640 170030640 G A LRP2 Silent p.C3601C 0.28 TCGA-LN-A49K-01 2 179606443 179606443 C T TTN Silent p.L3839L 0.08 TCGA-LN-A49K-01 2 210806065 210806065 T C UNC80 Missense_Mutation p.L2190P 0.11 probably_damaging(0.997) TCGA-LN-A49K-01 2 225422486 225422486 G A CUL3 Missense_Mutation p.L52F 0.50 deleterious(0) probably_damaging(0.98) TCGA-LN-A49K-01 2 55563852 55563852 T A CCDC88A Missense_Mutation p.T541S 0.35 tolerated(0.33) benign(0.052) TCGA-LN-A49K-01 2 73471716 73471716 G T CCT7 Missense_Mutation p.S164I 0.33 deleterious(0) benign(0.137) TCGA-LN-A49K-01 2 80875207 80875207 G C CTNNA2 3'UTR 0.21 TCGA-LN-A49K-01 3 128533176 128533176 C T RAB7A 3'UTR 0.12 TCGA-LN-A49K-01 3 156978891 156978891 G A VEPH1 3'UTR 0.18 TCGA-LN-A49K-01 3 158314684 158314684 C A MLF1 Missense_Mutation p.Q108K 0.04 tolerated(0.06) benign(0.102) TCGA-LN-A49K-01 3 172643275 172643275 T C SPATA16 Silent p.Q363Q 0.23 TCGA-LN-A49K-01 3 180369978 180369978 T A CCDC39 Missense_Mutation p.K336M 0.08 deleterious(0) probably_damaging(0.993) TCGA-LN-A49K-01 3 185865165 185865165 T G DGKG 3'UTR 0.23 TCGA-LN-A49K-01 3 38962700 38962700 C A SCN11A Silent p.L253L 0.22 TCGA-LN-A49K-01 3 89530899 89530899 A G EPHA3 3'UTR 0.14 TCGA-LN-A49K-01 4 158092612 158092612 C T GLRB 3'UTR 0.13 TCGA-LN-A49K-01 5 11082930 11082930 C A CTNND2 Missense_Mutation p.R889L 0.25 deleterious(0) probably_damaging(1) TCGA-LN-A49K-01 5 132035914 132035914 C A KIF3A Missense_Mutation p.E640D 0.44 tolerated(0.57) benign(0.024) TCGA-LN-A49K-01 5 174870237 174870237 G T DRD1 5'UTR 0.45 TCGA-LN-A49K-01 5 271762 271762 G T PDCD6 5'UTR 0.38 TCGA-LN-A49K-01 5 55149326 55149326 G C IL31RA Intron 0.07 TCGA-LN-A49K-01 5 64905171 64905171 G A TRIM23 Missense_Mutation p.R315C 0.44 deleterious(0) possibly_damaging(0.745) TCGA-LN-A49K-01 5 82937133 82937133 A G HAPLN1 3'UTR 0.80 TCGA-LN-A49K-01 6 159005076 159005076 G A TMEM181 Missense_Mutation p.E224K 0.18 tolerated(0.27) benign(0.017) TCGA-LN-A49K-01 6 159621089 159621089 T G FNDC1 Silent p.P122P 0.33 TCGA-LN-A49K-01 6 26390424 26390424 G A BTN2A2 Missense_Mutation p.E306K 0.23 tolerated(0.18) benign(0.033) TCGA-LN-A49K-01 6 26856948 26856948 C A GUSBP2 RNA 0.20 TCGA-LN-A49K-01 6 33663453 33663453 G A SBP1 Missense_Mutation p.P8S 0.12 unknown(0) TCGA-LN-A49K-01 6 42236785 42236785 G A TRERF1 Missense_Mutation p.R182C 0.59 deleterious_low_confidence(0.03) benign(0.177) TCGA-LN-A49K-01 6 43305393 43305393 G A ZNF318 Missense_Mutation p.R2115C 0.32 benign(0.004) TCGA-LN-A49K-01 6 43588707 43588707 G A GTPBP2 3'UTR 0.38 TCGA-LN-A49K-01 7 123594116 123594116 C T SPAM1 Silent p.Y164Y 0.38 TCGA-LN-A49K-01 7 133833054 133833054 A C LRGUK Missense_Mutation p.T218P 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-LN-A49K-01 7 148638612 148638612 T C RNY5 RNA 0.34 TCGA-LN-A49K-01 7 150695460 150695460 G A NOS3 Missense_Mutation p.D200N 0.36 tolerated(0.21) probably_damaging(0.974) TCGA-LN-A49K-01 7 38502672 38502672 G A AMPH Missense_Mutation p.P264L 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A49K-01 7 44736644 44736644 G A OGDH Missense_Mutation p.V678M 0.32 deleterious(0) probably_damaging(1) TCGA-LN-A49K-01 7 72361516 72361516 G T POM121 5'UTR 0.33 TCGA-LN-A49K-01 7 72361517 72361517 C T POM121 5'UTR 0.35 TCGA-LN-A49K-01 7 94174972 94174972 C G CASD1 Missense_Mutation p.T531S 0.21 deleterious(0.04) benign(0.144) TCGA-LN-A49K-01 7 99054131 99054131 T A CPSF4 3'UTR 0.30 TCGA-LN-A49K-01 8 54965225 54965225 G A LYPLA1 Missense_Mutation p.S151F 0.29 deleterious(0.01) possibly_damaging(0.486) TCGA-LN-A49K-01 8 59510074 59510074 G A NSMAF Missense_Mutation p.T586M 0.45 deleterious(0.01) probably_damaging(0.95) TCGA-LN-A49K-01 8 92972475 92972475 G A RUNX1T1 Missense_Mutation p.R615C 0.15 deleterious_low_confidence(0) unknown(0) TCGA-LN-A49K-01 9 103065971 103065971 G A TEX10 Silent p.L873L 0.23 TCGA-LN-A49K-01 9 125240137 125240137 C A OR1J1 Missense_Mutation p.Q23H 0.32 tolerated_low_confidence(0.09) benign(0.006) TCGA-LN-A49K-01 9 34635103 34635104 - A SIGMAR1 3'UTR 0.47 TCGA-LN-A49K-01 9 35703897 35703897 C T TLN1 Missense_Mutation p.V2078M 0.32 deleterious(0) probably_damaging(0.965) TCGA-LN-A49K-01 X 100668782 100668782 C A HNRNPH2 3'UTR 0.17 TCGA-LN-A49K-01 X 138643810 138643810 C T F9 Silent p.D322D 0.83 TCGA-LN-A49K-01 X 32659625 32659625 T C DMD Intron 0.27 TCGA-LN-A49K-01 X 80371790 80371790 G T HMGN5 Silent p.A60A 0.19 TCGA-LN-A49K-01 X 99956215 99956215 C T SYTL4 Splice_Site p.X146_splice 0.10 TCGA-LN-A49L-01 10 124273783 124273783 G A HTRA1 Missense_Mutation p.V451I 0.58 tolerated(0.07) benign(0.006) TCGA-LN-A49L-01 10 13151284 13151284 G A OPTN Silent p.L54L 0.15 TCGA-LN-A49L-01 10 14950954 14950954 G T DCLRE1C Missense_Mutation p.T511K 0.22 tolerated_low_confidence(0.05) benign(0.009) TCGA-LN-A49L-01 10 14950955 14950955 T G DCLRE1C Missense_Mutation p.T511P 0.21 deleterious_low_confidence(0.02) benign(0.323) TCGA-LN-A49L-01 10 17171716 17171716 T C CUBN Missense_Mutation p.I17V 0.24 tolerated(0.7) benign(0.006) TCGA-LN-A49L-01 10 50854688 50854688 G A CHAT Missense_Mutation p.G417R 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A49L-01 10 50916563 50916563 C T C10orf53 Missense_Mutation p.S125L 0.16 deleterious_low_confidence(0) unknown(0) TCGA-LN-A49L-01 10 5682028 5682028 C T ASB13 3'UTR 0.12 TCGA-LN-A49L-01 10 73587809 73587809 C G PSAP Missense_Mutation p.E228Q 0.19 tolerated(0.19) benign(0.063) TCGA-LN-A49L-01 10 74034859 74034859 C T DDIT4 Silent p.F204F 0.47 TCGA-LN-A49L-01 11 108031840 108031840 C G NPAT Missense_Mutation p.E1325Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-LN-A49L-01 11 110100179 110100179 C G RDX Intron 0.31 TCGA-LN-A49L-01 11 11958055 11958055 G A USP47 Missense_Mutation p.G624E 0.16 deleterious(0) probably_damaging(0.999) TCGA-LN-A49L-01 11 120776146 120776146 G C GRIK4 Missense_Mutation p.G474R 0.50 deleterious(0) probably_damaging(1) TCGA-LN-A49L-01 11 121986237 121986237 T A BLID 3'UTR 0.49 TCGA-LN-A49L-01 11 124743663 124743663 G C ROBO3 Silent p.V563V 0.40 TCGA-LN-A49L-01 11 134014718 134014718 G A JAM3 Silent p.P147P 0.34 TCGA-LN-A49L-01 11 20623033 20623033 A G SLC6A5 Missense_Mutation p.K121R 0.29 tolerated_low_confidence(0.11) benign(0.002) TCGA-LN-A49L-01 11 22647031 22647031 T C FANCF Missense_Mutation p.Y109C 0.58 tolerated(0.05) possibly_damaging(0.455) TCGA-LN-A49L-01 11 55339985 55339985 C T OR4C16 Silent p.L128L 0.65 TCGA-LN-A49L-01 11 56468326 56468326 T C OR9G1 Missense_Mutation p.S155P 0.14 deleterious(0) benign(0.151) TCGA-LN-A49L-01 11 58920609 58920609 C T FAM111A Nonsense_Mutation p.Q490* 0.29 TCGA-LN-A49L-01 11 59982060 59982060 C T MS4A4E Missense_Mutation p.E58K 0.22 tolerated_low_confidence(0.11) possibly_damaging(0.486) TCGA-LN-A49L-01 11 62623743 62623765 TGGAGCTACAGCCTCCTGAAGCC - SLC3A2 Frame_Shift_Del p.M1_?9 0.27 TCGA-LN-A49L-01 11 64428408 64428408 G A NRXN2 Nonsense_Mutation p.R668* 0.33 TCGA-LN-A49L-01 11 64519395 64519395 C - PYGM Splice_Site p.X590_splice 0.11 TCGA-LN-A49L-01 11 65623715 65623715 T A CFL1 Splice_Site p.X2_splice 0.23 TCGA-LN-A49L-01 11 65653041 65653041 G A FIBP Silent p.C202C 0.42 TCGA-LN-A49L-01 12 100676832 100676832 C A SCYL2 Silent p.V28V 0.26 TCGA-LN-A49L-01 12 102558360 102558360 C T PARPBP Nonsense_Mutation p.R214* 0.29 TCGA-LN-A49L-01 12 133778860 133778860 A T ZNF268 Silent p.S196S 0.33 TCGA-LN-A49L-01 12 30873757 30873757 T A CAPRIN2 Silent p.S712S 0.22 TCGA-LN-A49L-01 12 48238609 48238609 G C VDR Missense_Mutation p.R452G 0.16 deleterious(0) probably_damaging(0.992) TCGA-LN-A49L-01 12 48437107 48437107 T C SENP1 3'UTR 0.29 TCGA-LN-A49L-01 12 5022205 5022205 A G KCNA1 3'UTR 0.30 TCGA-LN-A49L-01 12 53009995 53009995 G C KRT73 Missense_Mutation p.S206W 0.15 deleterious(0) probably_damaging(0.981) TCGA-LN-A49L-01 12 53045389 53045389 C T KRT2 Missense_Mutation p.E180K 0.18 deleterious(0) probably_damaging(0.998) TCGA-LN-A49L-01 12 56994255 56994255 G A BAZ2A Missense_Mutation p.P1543L 0.67 tolerated(0.08) benign(0.001) TCGA-LN-A49L-01 12 57704142 57704142 C T R3HDM2 Missense_Mutation p.E24K 0.22 deleterious(0.02) probably_damaging(0.991) TCGA-LN-A49L-01 13 101910850 101910850 T C NALCN Missense_Mutation p.N404D 0.28 tolerated(0.2) benign(0.379) TCGA-LN-A49L-01 13 107211906 107211906 C A ARGLU1 Missense_Mutation p.R149S 0.49 deleterious(0) benign(0.402) TCGA-LN-A49L-01 13 49580412 49580412 A G FNDC3A Missense_Mutation p.D29G 0.37 deleterious(0) benign(0.063) TCGA-LN-A49L-01 14 101347804 101347804 G A RTL1 Missense_Mutation p.R1108W 0.32 deleterious_low_confidence(0.02) benign(0.153) TCGA-LN-A49L-01 14 60194345 60194345 C T RTN1 Missense_Mutation p.E353K 0.38 deleterious(0) possibly_damaging(0.558) TCGA-LN-A49L-01 14 90770449 90770449 T C NRDE2 Missense_Mutation p.T279A 0.35 deleterious(0) probably_damaging(0.994) TCGA-LN-A49L-01 14 94079210 94079210 C T UNC79 Silent p.H1097H 0.36 TCGA-LN-A49L-01 14 94712823 94712823 G C PPP4R4 Missense_Mutation p.D520H 0.39 deleterious(0) probably_damaging(0.997) TCGA-LN-A49L-01 15 101597188 101597188 C G LRRK1 Missense_Mutation p.P1487R 0.27 tolerated(0.33) probably_damaging(0.92) TCGA-LN-A49L-01 15 50903479 50903479 G A TRPM7 Silent p.S697S 0.35 TCGA-LN-A49L-01 15 52353571 52353571 C T MAPK6 Missense_Mutation p.P314L 0.34 deleterious(0.03) probably_damaging(0.985) TCGA-LN-A49L-01 15 68504072 68504072 G T CLN6 Missense_Mutation p.Q143K 0.36 tolerated(0.1) probably_damaging(0.968) TCGA-LN-A49L-01 15 74925075 74925075 C T EDC3 Missense_Mutation p.E469K 0.07 tolerated(0.2) benign(0.05) TCGA-LN-A49L-01 15 75980366 75980366 C T CSPG4 Missense_Mutation p.V1014M 0.17 deleterious(0.02) possibly_damaging(0.613) TCGA-LN-A49L-01 15 85259557 85259557 C G SEC11A 5'UTR 0.25 TCGA-LN-A49L-01 15 91832773 91832773 A C SV2B Silent p.A577A 0.21 TCGA-LN-A49L-01 15 99506188 99506188 T C IGF1R 3'UTR 0.20 TCGA-LN-A49L-01 16 24105592 24105592 A T PRKCB Missense_Mutation p.E265D 0.38 deleterious(0.04) probably_damaging(0.925) TCGA-LN-A49L-01 16 30393911 30393911 T C SEPT1 Missense_Mutation p.S27G 0.13 tolerated_low_confidence(0.43) benign(0) TCGA-LN-A49L-01 16 3079364 3079364 C G CCDC64B Missense_Mutation p.E342Q 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A49L-01 16 30999400 30999400 G T HSD3B7 Missense_Mutation p.D336Y 0.17 deleterious(0) possibly_damaging(0.904) TCGA-LN-A49L-01 16 31106745 31106745 C T VKORC1 5'Flank 0.32 TCGA-LN-A49L-01 16 31724640 31724640 G A ZNF720 5'UTR 0.24 TCGA-LN-A49L-01 16 66847533 66847533 A C NAE1 Nonsense_Mutation p.L323* 0.56 TCGA-LN-A49L-01 16 69008066 69008066 C A TANGO6 Missense_Mutation p.A946E 0.33 deleterious(0.02) benign(0.04) TCGA-LN-A49L-01 16 70546283 70546283 G C COG4 Silent p.L199L 0.37 TCGA-LN-A49L-01 16 85689343 85689343 C A GSE1 Missense_Mutation p.S270Y 0.31 tolerated(0.05) unknown(0) TCGA-LN-A49L-01 16 88499969 88499969 G A ZNF469 Missense_Mutation p.E2003K 0.31 benign(0) TCGA-LN-A49L-01 16 89784476 89784476 C T VPS9D1 Intron 0.19 TCGA-LN-A49L-01 17 34044277 34044277 G T AP2B1 Missense_Mutation p.G897V 0.38 deleterious(0) possibly_damaging(0.538) TCGA-LN-A49L-01 17 34091541 34091541 G C C17orf50 Missense_Mutation p.K143N 0.31 deleterious(0.03) possibly_damaging(0.895) TCGA-LN-A49L-01 17 35930849 35930849 A T SYNRG Missense_Mutation p.S412T 0.67 tolerated(0.05) probably_damaging(0.981) TCGA-LN-A49L-01 17 41977954 41977954 C G MPP2 Intron 0.80 TCGA-LN-A49L-01 17 6021393 6021393 G A WSCD1 Missense_Mutation p.M420I 0.50 tolerated(0.38) benign(0.026) TCGA-LN-A49L-01 17 60865859 60865859 G T MARCH10 Missense_Mutation p.S64R 0.29 tolerated(0.13) possibly_damaging(0.839) TCGA-LN-A49L-01 17 62082482 62082482 T G ICAM2 Missense_Mutation p.N105H 0.30 tolerated(0.11) benign(0.197) TCGA-LN-A49L-01 17 74035188 74035188 C T SRP68 3'UTR 0.28 TCGA-LN-A49L-01 17 7578547 7578547 G - TP53 Frame_Shift_Del p.P128Lfs*42 0.36 TCGA-LN-A49L-01 17 7719967 7719967 G A DNAH2 Missense_Mutation p.E3270K 0.29 benign(0.11) TCGA-LN-A49L-01 17 80439050 80439050 G T NARF Missense_Mutation p.L244F 0.71 deleterious(0.05) possibly_damaging(0.756) TCGA-LN-A49L-01 19 11040536 11040536 C G C19orf52 3'UTR 0.17 TCGA-LN-A49L-01 19 11598149 11598149 T C ZNF653 Missense_Mutation p.T377A 0.10 tolerated(0.51) benign(0.002) TCGA-LN-A49L-01 19 17411829 17411829 C G ABHD8 Silent p.V199V 0.16 TCGA-LN-A49L-01 19 17412239 17412239 C A ABHD8 Missense_Mutation p.A63S 0.41 tolerated_low_confidence(0.72) benign(0.003) TCGA-LN-A49L-01 19 19120975 19120975 G A SUGP2 Missense_Mutation p.P676L 0.11 deleterious(0.01) probably_damaging(0.943) TCGA-LN-A49L-01 19 35837505 35837505 G C CD22 Missense_Mutation p.D817H 0.05 deleterious(0) probably_damaging(0.992) TCGA-LN-A49L-01 19 36368698 36368698 G T APLP1 Missense_Mutation p.G508V 0.16 tolerated(0.26) benign(0.402) TCGA-LN-A49L-01 19 37975938 37975938 T C ZNF570 Missense_Mutation p.C472R 0.13 deleterious(0) probably_damaging(1) TCGA-LN-A49L-01 19 38386867 38386867 G A WDR87 Intron 0.59 TCGA-LN-A49L-01 19 38865577 38865577 C G PSMD8 Missense_Mutation p.C112W 0.13 deleterious(0) probably_damaging(0.999) TCGA-LN-A49L-01 19 38876738 38876738 G T GGN Silent p.G388G 0.29 TCGA-LN-A49L-01 19 38904097 38904097 G A RASGRP4 Silent p.F416F 0.15 TCGA-LN-A49L-01 19 47503672 47503672 C A ARHGAP35 Missense_Mutation p.F1409L 0.38 deleterious(0) probably_damaging(0.913) TCGA-LN-A49L-01 19 47575222 47575222 C T ZC3H4 Silent p.P653P 0.54 TCGA-LN-A49L-01 19 52887707 52887707 G T ZNF880 Nonsense_Mutation p.G292* 0.35 TCGA-LN-A49L-01 19 53793633 53793633 G C BIRC8 5'UTR 0.61 TCGA-LN-A49L-01 19 55526285 55526285 G A GP6 Missense_Mutation p.A343V 0.71 deleterious_low_confidence(0) benign(0) TCGA-LN-A49L-01 19 55526286 55526286 C A GP6 Missense_Mutation p.A343S 0.73 deleterious_low_confidence(0) benign(0) TCGA-LN-A49L-01 19 56416358 56416358 C T NLRP13 Silent p.K856K 0.96 TCGA-LN-A49L-01 19 56424072 56424072 G T NLRP13 Missense_Mutation p.L371I 0.30 deleterious(0) probably_damaging(0.998) TCGA-LN-A49L-01 19 57955810 57955810 C A ZNF749 Missense_Mutation p.H432N 0.63 deleterious(0) possibly_damaging(0.758) TCGA-LN-A49L-01 19 58193488 58193488 C T ZNF551 5'UTR 0.30 TCGA-LN-A49L-01 19 7523441 7523442 GG - ARHGEF18 Frame_Shift_Del p.E555Sfs*22 0.26 TCGA-LN-A49L-01 19 828365 828365 C T AZU1 Missense_Mutation p.A65V 0.73 deleterious(0.01) benign(0.058) TCGA-LN-A49L-01 19 846216 846216 C - PRTN3 Frame_Shift_Del p.H148Tfs*60 0.33 TCGA-LN-A49L-01 1 114304727 114304727 T - RSBN1 3'UTR 0.23 TCGA-LN-A49L-01 1 1268382 1268382 G C TAS1R3 Missense_Mutation p.E453Q 0.24 tolerated(0.11) benign(0.076) TCGA-LN-A49L-01 1 167343527 167343527 C T POU2F1 Silent p.I195I 0.13 TCGA-LN-A49L-01 1 16955139 16955139 C T CROCCP2 3'Flank 0.05 TCGA-LN-A49L-01 1 19559220 19559220 A T EMC1 Nonsense_Mutation p.Y560* 0.22 TCGA-LN-A49L-01 1 208070876 208070876 G C CD34 Missense_Mutation p.Q187E 0.14 tolerated(0.65) benign(0.025) TCGA-LN-A49L-01 1 216741436 216741436 C G ESRRG Silent p.V203V 0.10 TCGA-LN-A49L-01 1 220387305 220387305 G C RAB3GAP2 Missense_Mutation p.T66S 0.55 tolerated(0.57) benign(0.002) TCGA-LN-A49L-01 1 220835947 220835947 A G MARK1 3'Flank 0.20 TCGA-LN-A49L-01 1 22903214 22903214 G A EPHA8 Missense_Mutation p.D222N 0.33 deleterious(0) probably_damaging(0.998) TCGA-LN-A49L-01 1 236751319 236751319 T C HEATR1 Missense_Mutation p.K519E 0.25 tolerated(0.36) benign(0.02) TCGA-LN-A49L-01 1 236969525 236969525 G C MTR Missense_Mutation p.E111Q 0.10 tolerated(0.16) possibly_damaging(0.609) TCGA-LN-A49L-01 1 237753263 237753263 C T RYR2 Nonsense_Mutation p.Q1257* 0.12 TCGA-LN-A49L-01 1 24125155 24125155 C G GALE Missense_Mutation p.E63Q 0.20 tolerated(0.13) benign(0.003) TCGA-LN-A49L-01 1 246887741 246887741 G A SCCPDH Missense_Mutation p.R6K 0.12 tolerated(0.1) benign(0.098) TCGA-LN-A49L-01 1 248487172 248487174 TCC GT OR2M7 Frame_Shift_Del p.G233Tfs*53 0.25 TCGA-LN-A49L-01 1 34090131 34090131 G A CSMD2 Silent p.G1831G 0.62 TCGA-LN-A49L-01 1 35580160 35580160 A C ZMYM1 Missense_Mutation p.K910T 0.20 deleterious(0.03) probably_damaging(0.962) TCGA-LN-A49L-01 1 59248922 59248922 C A JUN 5'UTR 0.20 TCGA-LN-A49L-01 1 6694732 6694732 C T DNAJC11 3'UTR 0.32 TCGA-LN-A49L-01 1 77620211 77620211 G T PIGK Missense_Mutation p.F303L 0.23 deleterious(0) probably_damaging(0.973) TCGA-LN-A49L-01 1 77949036 77949036 C G AK5 Missense_Mutation p.T365S 0.29 tolerated(0.68) benign(0.002) TCGA-LN-A49L-01 1 78030640 78030640 C A ZZZ3 3'UTR 0.24 TCGA-LN-A49L-01 20 33147159 33147159 C T MAP1LC3A Silent p.I39I 0.52 TCGA-LN-A49L-01 20 3734755 3734755 C A C20orf27 Missense_Mutation p.A184S 0.67 tolerated(0.08) benign(0.355) TCGA-LN-A49L-01 20 40706749 40706749 T G PTPRT 3'UTR 0.18 TCGA-LN-A49L-01 20 40706961 40706961 G A PTPRT 3'UTR 0.56 TCGA-LN-A49L-01 20 44511684 44511684 C A ZSWIM1 Missense_Mutation p.F151L 0.28 tolerated(0.07) benign(0.111) TCGA-LN-A49L-01 20 56814841 56814841 G C PPP4R1L 3'UTR 0.24 TCGA-LN-A49L-01 20 56936244 56936244 G A RAB22A 3'UTR 0.22 TCGA-LN-A49L-01 21 45406328 45406328 C T AGPAT3 3'UTR 0.09 TCGA-LN-A49L-01 21 47316257 47316257 G A PCBP3 Missense_Mutation p.R49H 0.51 deleterious(0) possibly_damaging(0.894) TCGA-LN-A49L-01 21 47588410 47588410 C G SPATC1L Missense_Mutation p.S119T 0.15 tolerated(0.33) benign(0.009) TCGA-LN-A49L-01 22 21064264 21064264 G C PI4KA Silent p.V2035V 0.30 TCGA-LN-A49L-01 22 21802971 21802971 G T HIC2 3'UTR 0.75 TCGA-LN-A49L-01 22 28503690 28503690 G A TTC28 Nonsense_Mutation p.R715* 0.36 TCGA-LN-A49L-01 22 30812056 30812056 C T SEC14L2 Silent p.L297L 0.73 TCGA-LN-A49L-01 22 38333778 38333778 G T MICALL1 Nonsense_Mutation p.E817* 0.21 TCGA-LN-A49L-01 22 50014114 50014114 C A C22orf34 3'UTR 0.24 TCGA-LN-A49L-01 2 116525872 116525872 G T DPP10 Splice_Site p.X376_splice 0.26 TCGA-LN-A49L-01 2 132237994 132237994 G T TUBA3D Missense_Mutation p.R243L 0.17 deleterious_low_confidence(0) possibly_damaging(0.705) TCGA-LN-A49L-01 2 152226759 152226759 G T TNFAIP6 Missense_Mutation p.G207V 0.24 deleterious(0) probably_damaging(0.991) TCGA-LN-A49L-01 2 198400257 198400257 A G HSPE1-MOB4 Missense_Mutation p.I79V 0.22 deleterious(0) probably_damaging(0.964) TCGA-LN-A49L-01 2 202900687 202900688 - TTGCTG FZD7 In_Frame_Ins p.L440_L441dup 0.84 TCGA-LN-A49L-01 2 220396750 220396750 G C ASIC4 Missense_Mutation p.R379P 0.78 deleterious(0) probably_damaging(0.94) TCGA-LN-A49L-01 2 27668210 27668210 A G IFT172 Missense_Mutation p.L1674P 0.12 deleterious(0) probably_damaging(0.999) TCGA-LN-A49L-01 2 29917827 29917827 G T ALK Missense_Mutation p.H281N 0.37 deleterious(0.05) benign(0.315) TCGA-LN-A49L-01 2 40340927 40340927 C T SLC8A1 3'Flank 0.58 TCGA-LN-A49L-01 2 50573871 50573871 T C NRXN1 Intron 0.21 TCGA-LN-A49L-01 2 60684822 60684822 C T BCL11A 3'UTR 0.29 TCGA-LN-A49L-01 2 61468742 61468742 C A USP34 Nonsense_Mutation p.E2244* 0.12 TCGA-LN-A49L-01 2 71160355 71160355 G A VAX2 3'UTR 0.08 TCGA-LN-A49L-01 2 90249103 90249103 C A IGKV1D-43 Missense_Mutation p.A20D 0.18 deleterious(0) benign(0.03) TCGA-LN-A49L-01 3 100295770 100295770 T G TMEM45A Missense_Mutation p.L246V 0.30 tolerated(0.18) possibly_damaging(0.871) TCGA-LN-A49L-01 3 101575996 101575996 T G NFKBIZ Missense_Mutation p.L635R 0.21 deleterious(0.03) possibly_damaging(0.643) TCGA-LN-A49L-01 3 122087027 122087027 G T CCDC58 Missense_Mutation p.T107K 0.22 deleterious(0.05) possibly_damaging(0.627) TCGA-LN-A49L-01 3 124174024 124174024 C A KALRN Missense_Mutation p.Q1183K 0.37 deleterious(0.01) possibly_damaging(0.712) TCGA-LN-A49L-01 3 125824715 125824715 G A ALDH1L1 Missense_Mutation p.S846F 0.07 deleterious(0) probably_damaging(0.999) TCGA-LN-A49L-01 3 1339605 1339605 G C CNTN6 Missense_Mutation p.V231L 0.13 deleterious(0.05) possibly_damaging(0.582) TCGA-LN-A49L-01 3 141499459 141499459 C T GRK7 Missense_Mutation p.R286C 0.20 deleterious(0) probably_damaging(0.927) TCGA-LN-A49L-01 3 142131431 142131431 T A XRN1 Missense_Mutation p.K556N 0.15 deleterious(0) benign(0.184) TCGA-LN-A49L-01 3 158288956 158288956 C A MLF1 5'Flank 0.30 TCGA-LN-A49L-01 3 16368365 16368365 C A RFTN1 Missense_Mutation p.D389Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-LN-A49L-01 3 164783167 164783167 G A SI Missense_Mutation p.S230L 0.16 deleterious(0.01) probably_damaging(0.978) TCGA-LN-A49L-01 3 183273193 183273193 G T KLHL6 Missense_Mutation p.F83L 0.26 deleterious(0) probably_damaging(0.999) TCGA-LN-A49L-01 3 20216539 20216539 G C SGOL1 Missense_Mutation p.P162A 0.37 deleterious(0.04) benign(0.214) TCGA-LN-A49L-01 3 22210428 22210428 A G ZNF385D RNA 0.25 TCGA-LN-A49L-01 3 47039969 47039969 G T NBEAL2 Missense_Mutation p.M1045I 0.19 tolerated(0.05) benign(0.005) TCGA-LN-A49L-01 3 68802149 68802149 C T FAM19A4 Missense_Mutation p.G51R 0.57 deleterious(0) probably_damaging(1) TCGA-LN-A49L-01 4 100125300 100125300 C G ADH6 3'UTR 0.33 TCGA-LN-A49L-01 4 114279791 114279791 G A ANK2 Silent p.A3339A 0.24 TCGA-LN-A49L-01 4 118006437 118006454 AGCCCCAGCAGGAAGAAC - TRAM1L1 In_Frame_Del p.M32_L38delinsI 0.31 TCGA-LN-A49L-01 4 122681585 122681585 C A TMEM155 Missense_Mutation p.S86I 0.26 deleterious_low_confidence(0.02) benign(0.102) TCGA-LN-A49L-01 4 134073552 134073552 G A PCDH10 Missense_Mutation p.A753T 0.26 tolerated(0.5) benign(0.026) TCGA-LN-A49L-01 4 13601756 13601756 G C BOD1L1 Missense_Mutation p.I2256M 0.31 probably_damaging(0.99) TCGA-LN-A49L-01 4 16010698 16010698 T C PROM1 Missense_Mutation p.D392G 0.39 deleterious(0.02) benign(0.216) TCGA-LN-A49L-01 4 170520292 170520292 G A NEK1 Nonsense_Mutation p.R91* 0.24 TCGA-LN-A49L-01 4 1720170 1720171 - G TMEM129 Frame_Shift_Ins p.L130Pfs*19 0.19 TCGA-LN-A49L-01 4 175898320 175898320 T A ADAM29 Missense_Mutation p.D548E 0.16 deleterious(0) probably_damaging(0.99) TCGA-LN-A49L-01 4 38139135 38139136 - T TBC1D1 3'UTR 0.37 TCGA-LN-A49L-01 4 47589054 47589054 G T ATP10D Missense_Mutation p.V1258F 0.37 deleterious(0.01) probably_damaging(0.991) TCGA-LN-A49L-01 4 55593704 55593704 T G KIT Missense_Mutation p.S590R 0.36 tolerated(1) benign(0.269) TCGA-LN-A49L-01 4 82027067 82027067 G T PRKG2 Missense_Mutation p.Q655K 0.27 deleterious(0.02) possibly_damaging(0.726) TCGA-LN-A49L-01 4 85711028 85711028 C A WDFY3 Nonsense_Mutation p.E1174* 0.21 TCGA-LN-A49L-01 5 112420928 112420928 C T MCC Missense_Mutation p.R493H 0.12 tolerated(0.13) probably_damaging(0.993) TCGA-LN-A49L-01 5 140237801 140237801 C T PCDHA10 Missense_Mutation p.A723V 0.51 tolerated_low_confidence(0.09) benign(0.024) TCGA-LN-A49L-01 5 140535760 140535760 G A PCDHB17 Missense_Mutation p.A62T 0.52 tolerated_low_confidence(0.4) benign(0.036) TCGA-LN-A49L-01 5 140554925 140554925 C A PCDHB7 3'UTR 0.14 TCGA-LN-A49L-01 5 153175034 153175034 A G GRIA1 Intron 0.27 TCGA-LN-A49L-01 5 432961 432961 A G AHRR Silent p.E359E 0.37 TCGA-LN-A49L-01 5 6755684 6755684 G T PAPD7 3'UTR 0.36 TCGA-LN-A49L-01 5 7827103 7827103 C A ADCY2 3'UTR 0.56 TCGA-LN-A49L-01 6 160888611 160888611 C G LPAL2 RNA 0.16 TCGA-LN-A49L-01 6 17615565 17615565 C T NUP153 3'UTR 0.38 TCGA-LN-A49L-01 6 28327648 28327648 G T ZKSCAN3 Silent p.L95L 0.43 TCGA-LN-A49L-01 6 29976907 29976907 G A ZNRD1-AS1 RNA 0.48 TCGA-LN-A49L-01 6 43274241 43274241 T G CRIP3 Missense_Mutation p.K115Q 0.15 tolerated(0.2) benign(0.394) TCGA-LN-A49L-01 6 56470194 56470194 C T DST Intron 0.27 TCGA-LN-A49L-01 6 56472332 56472332 A C DST Intron 0.25 TCGA-LN-A49L-01 6 79655198 79655198 C T PHIP Silent p.V1549V 0.23 TCGA-LN-A49L-01 7 107572812 107572812 G T LAMB1 Missense_Mutation p.T1400K 0.26 deleterious(0.01) benign(0.147) TCGA-LN-A49L-01 7 132412352 132412352 G A AC009365.3 Silent p.L68L 0.16 TCGA-LN-A49L-01 7 154667636 154667636 A T DPP6 Missense_Mutation p.Q635L 0.55 deleterious(0) possibly_damaging(0.782) TCGA-LN-A49L-01 7 157000528 157000528 G C UBE3C Missense_Mutation p.E570Q 0.48 tolerated(0.09) benign(0.168) TCGA-LN-A49L-01 7 21552442 21552442 G T SP4 3'UTR 0.41 TCGA-LN-A49L-01 7 21552443 21552443 A C SP4 3'UTR 0.41 TCGA-LN-A49L-01 7 63537932 63537932 A C ZNF727 Silent p.R169R 0.19 TCGA-LN-A49L-01 7 86568140 86568140 G A KIAA1324L Silent p.D328D 0.35 TCGA-LN-A49L-01 7 94295734 94295734 C T PEG10 3'UTR 0.24 TCGA-LN-A49L-01 7 95457368 95457368 G A DYNC1I1 Splice_Site p.X122_splice 0.43 TCGA-LN-A49L-01 7 99691652 99691652 C T MCM7 Intron 0.36 TCGA-LN-A49L-01 8 101206670 101206670 C G SPAG1 Intron 0.36 TCGA-LN-A49L-01 8 145160882 145160882 C A MAF1 Nonsense_Mutation p.S65* 0.43 TCGA-LN-A49L-01 8 145624685 145624685 A G CPSF1 Missense_Mutation p.L458P 0.36 deleterious(0) probably_damaging(0.972) TCGA-LN-A49L-01 8 22370817 22370817 T C PPP3CC Silent p.F214F 0.33 TCGA-LN-A49L-01 8 31012243 31012243 C G WRN Missense_Mutation p.S1264C 0.38 tolerated(0.1) possibly_damaging(0.827) TCGA-LN-A49L-01 8 33449263 33449263 T C DUSP26 3'UTR 0.20 TCGA-LN-A49L-01 8 40012678 40012678 C A C8orf4 3'UTR 0.24 TCGA-LN-A49L-01 8 41581100 41581100 C T ANK1 Missense_Mutation p.V288M 0.16 deleterious(0) probably_damaging(1) TCGA-LN-A49L-01 8 67968797 67968797 T C COPS5 Missense_Mutation p.I206V 0.28 tolerated(0.27) benign(0.088) TCGA-LN-A49L-01 8 72110756 72110756 C T EYA1 3'UTR 0.36 TCGA-LN-A49L-01 8 74332366 74332366 C T STAU2 3'Flank 0.29 TCGA-LN-A49L-01 8 97346553 97346553 G A PTDSS1 3'UTR 0.19 TCGA-LN-A49L-01 8 97620584 97620584 G C SDC2 Missense_Mutation p.E110Q 0.07 tolerated(0.33) possibly_damaging(0.486) TCGA-LN-A49L-01 9 114820919 114820919 G C SUSD1 Missense_Mutation p.S633C 0.12 tolerated(0.21) possibly_damaging(0.625) TCGA-LN-A49L-01 9 125512324 125512324 C A OR1L6 Missense_Mutation p.N66K 0.64 deleterious(0.02) benign(0.356) TCGA-LN-A49L-01 9 125582063 125582063 G C PDCL 3'UTR 0.36 TCGA-LN-A49L-01 9 132681440 132681440 C A FNBP1 Intron 0.37 TCGA-LN-A49L-01 9 134346214 134346214 C T PRRC2B Missense_Mutation p.P651S 0.19 tolerated(0.11) probably_damaging(0.947) TCGA-LN-A49L-01 9 138377490 138377490 G A PPP1R26 Silent p.Q378Q 0.31 TCGA-LN-A49L-01 9 139286514 139286514 C A SNAPC4 Missense_Mutation p.Q285H 0.76 deleterious(0) probably_damaging(0.991) TCGA-LN-A49L-01 9 70177146 70177146 C T FOXD4L5 Missense_Mutation p.G280R 0.12 tolerated(0.08) benign(0.126) TCGA-LN-A49L-01 9 84608402 84608402 C A SPATA31D1 Missense_Mutation p.S1006Y 0.25 deleterious(0.02) probably_damaging(0.919) TCGA-LN-A49L-01 9 91041391 91041391 A T SPIN1 5'UTR 0.77 TCGA-LN-A49L-01 X 105450626 105450626 C G MUM1L1 Missense_Mutation p.Q401E 0.52 deleterious(0.01) benign(0.266) TCGA-LN-A49L-01 X 142596594 142596594 C T SPANXN3 3'UTR 0.35 TCGA-LN-A49L-01 X 65411972 65411972 A T HEPH Missense_Mutation p.D409V 0.35 deleterious(0.01) benign(0.097) TCGA-LN-A49L-01 Y 15030207 15030207 G A DDX3Y 3'UTR 0.53 TCGA-LN-A49L-01 Y 24460678 24460678 G T RBMY2FP RNA 0.44 TCGA-LN-A49M-01 10 120442047 120442047 G C CACUL1 3'UTR 0.73 TCGA-LN-A49M-01 10 135111525 135111525 C G TUBGCP2 Missense_Mutation p.E183Q 0.44 tolerated(0.12) benign(0.109) TCGA-LN-A49M-01 10 68857428 68857428 C T LRRTM3 Silent p.L540L 0.27 TCGA-LN-A49M-01 10 68857926 68857926 C T LRRTM3 3'UTR 0.26 TCGA-LN-A49M-01 10 69961659 69961659 G A MYPN Silent p.V1189V 0.29 TCGA-LN-A49M-01 10 70716052 70716052 G C DDX21 Missense_Mutation p.R24P 0.29 tolerated_low_confidence(0.15) benign(0.004) TCGA-LN-A49M-01 10 75802874 75802874 C T VCL Nonsense_Mutation p.Q68* 0.39 TCGA-LN-A49M-01 10 99350597 99350597 G A C10orf62 3'UTR 0.35 TCGA-LN-A49M-01 11 105852150 105852150 G A GRIA4 3'UTR 0.50 TCGA-LN-A49M-01 11 10825579 10825579 T A EIF4G2 Missense_Mutation p.N190I 0.52 deleterious(0) benign(0.08) TCGA-LN-A49M-01 11 113672343 113672343 C T USP28 Missense_Mutation p.E974K 0.57 tolerated(0.1) probably_damaging(0.989) TCGA-LN-A49M-01 11 17794205 17794205 G C KCNC1 Intron 0.44 TCGA-LN-A49M-01 11 32452269 32452269 C A WT1 Intron 0.55 TCGA-LN-A49M-01 11 55432918 55432918 C T OR4C6 Silent p.L92L 0.18 TCGA-LN-A49M-01 11 61491028 61491028 C T DAGLA Missense_Mutation p.R178W 0.27 deleterious(0) possibly_damaging(0.846) TCGA-LN-A49M-01 11 62289859 62289859 C G AHNAK Silent p.L4010L 0.29 TCGA-LN-A49M-01 11 62290087 62290087 C A AHNAK Missense_Mutation p.K3934N 0.38 probably_damaging(0.999) TCGA-LN-A49M-01 11 62299163 62299163 G T AHNAK Nonsense_Mutation p.S909* 0.27 TCGA-LN-A49M-01 11 62554015 62554015 G A TAF6L Missense_Mutation p.M372I 0.24 tolerated(0.27) benign(0.002) TCGA-LN-A49M-01 11 63886343 63886343 G C FLRT1 3'UTR 0.32 TCGA-LN-A49M-01 11 64527313 64527313 C G PYGM Missense_Mutation p.A20P 0.31 tolerated(0.09) probably_damaging(0.996) TCGA-LN-A49M-01 11 64621765 64621765 C T EHD1 3'UTR 0.41 TCGA-LN-A49M-01 11 67800424 67800424 G T NDUFS8 Missense_Mutation p.M48I 0.35 tolerated_low_confidence(0.45) benign(0.004) TCGA-LN-A49M-01 11 68707045 68707045 G C IGHMBP2 Missense_Mutation p.R943T 0.33 tolerated(0.08) benign(0.142) TCGA-LN-A49M-01 11 77383154 77383154 C T RSF1 Silent p.K1228K 0.51 TCGA-LN-A49M-01 11 85437481 85437481 C T SYTL2 Missense_Mutation p.E7K 0.36 tolerated_low_confidence(0.1) benign(0.175) TCGA-LN-A49M-01 12 104742133 104742133 A G TXNRD1 Silent p.V628V 0.25 TCGA-LN-A49M-01 12 112924299 112924299 C A PTPN11 Silent p.V415V 0.39 TCGA-LN-A49M-01 12 120651990 120651990 G A PXN Missense_Mutation p.H451Y 0.45 deleterious(0) probably_damaging(1) TCGA-LN-A49M-01 12 49217550 49217550 C G CACNB3 Silent p.V85V 0.33 TCGA-LN-A49M-01 12 53729473 53729473 G A SP7 5'UTR 0.29 TCGA-LN-A49M-01 12 54447759 54447759 C A HOXC4 Missense_Mutation p.P18H 0.35 deleterious(0) probably_damaging(0.996) TCGA-LN-A49M-01 12 57140622 57140622 G C PRIM1 Missense_Mutation p.P129A 0.44 tolerated(0.6) benign(0.01) TCGA-LN-A49M-01 12 60173438 60173438 C T SLC16A7 Missense_Mutation p.S472L 0.09 tolerated(0.19) benign(0.15) TCGA-LN-A49M-01 12 69663377 69663377 G T CPSF6 3'UTR 0.30 TCGA-LN-A49M-01 12 69980553 69980553 C T CCT2 Silent p.I33I 0.33 TCGA-LN-A49M-01 12 72956810 72956810 C T TRHDE Nonsense_Mutation p.Q633* 0.31 TCGA-LN-A49M-01 12 82780586 82780586 G C METTL25 Missense_Mutation p.M88I 0.41 tolerated(0.57) benign(0) TCGA-LN-A49M-01 13 103388934 103388934 C G CCDC168 Missense_Mutation p.E76Q 0.26 tolerated(0.12) possibly_damaging(0.607) TCGA-LN-A49M-01 13 103396902 103396902 C G LINC00283 RNA 0.49 TCGA-LN-A49M-01 13 103397430 103397430 C G LINC00283 RNA 0.21 TCGA-LN-A49M-01 13 23913508 23913508 T C SACS Missense_Mutation p.M1503V 0.52 benign(0.032) TCGA-LN-A49M-01 13 32527031 32527031 G A EEF1DP3 RNA 0.50 TCGA-LN-A49M-01 13 78191993 78191993 C T SCEL Nonsense_Mutation p.Q523* 0.39 TCGA-LN-A49M-01 14 101421716 101421716 G A SNORD114-5 RNA 0.40 TCGA-LN-A49M-01 14 20295898 20295898 C T OR4N2 Silent p.C97C 0.21 TCGA-LN-A49M-01 14 20404053 20404053 T C OR4K1 Silent p.F76F 0.21 TCGA-LN-A49M-01 14 21861740 21861740 C G CHD8 Missense_Mutation p.E2072Q 0.44 tolerated_low_confidence(0.16) benign(0.403) TCGA-LN-A49M-01 14 23004519 23004519 C T TRAJ9 Silent p.F6F 0.33 TCGA-LN-A49M-01 14 23886443 23886443 C G MYH7 Missense_Mutation p.E1480Q 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-LN-A49M-01 14 24785316 24785316 C G LTB4R Silent p.L153L 0.28 TCGA-LN-A49M-01 14 31355343 31355343 C G COCH Missense_Mutation p.I434M 0.30 deleterious(0) possibly_damaging(0.462) TCGA-LN-A49M-01 14 35480717 35480717 A G SRP54 Missense_Mutation p.Y163C 0.20 deleterious(0) probably_damaging(0.97) TCGA-LN-A49M-01 14 39651779 39651779 C T PNN 3'UTR 0.38 TCGA-LN-A49M-01 14 47120593 47120593 C G RPL10L Missense_Mutation p.R116P 0.26 deleterious(0.05) benign(0.123) TCGA-LN-A49M-01 14 55642728 55642728 G A DLGAP5 Missense_Mutation p.S353F 0.26 deleterious(0) benign(0.435) TCGA-LN-A49M-01 14 94582247 94582247 C T IFI27 Missense_Mutation p.S81L 0.26 deleterious(0) benign(0.001) TCGA-LN-A49M-01 14 96829287 96829287 G C ATG2B Missense_Mutation p.I9M 0.29 deleterious(0) probably_damaging(0.924) TCGA-LN-A49M-01 14 99864889 99864889 T C SETD3 3'UTR 0.29 TCGA-LN-A49M-01 15 23034295 23034295 G A NIPA2 5'UTR 0.19 TCGA-LN-A49M-01 15 29400541 29400541 C T APBA2 Silent p.I662I 0.31 TCGA-LN-A49M-01 15 34648143 34648143 C T NUTM1 Missense_Mutation p.S617L 0.36 tolerated(0.19) benign(0.014) TCGA-LN-A49M-01 15 49031177 49031177 C T CEP152 Missense_Mutation p.E1468K 0.34 tolerated(0.08) benign(0.034) TCGA-LN-A49M-01 15 54919645 54919645 G A UNC13C 3'UTR 0.20 TCGA-LN-A49M-01 15 62207918 62207918 C G VPS13C Missense_Mutation p.E2787Q 0.31 deleterious(0) probably_damaging(1) TCGA-LN-A49M-01 15 65943238 65943238 C T SLC24A1 Silent p.I917I 0.22 TCGA-LN-A49M-01 15 69548140 69548140 C G GLCE 5'UTR 0.29 TCGA-LN-A49M-01 15 72502159 72502159 G A PKM Silent p.L140L 0.42 TCGA-LN-A49M-01 15 75014785 75014785 G C CYP1A1 Silent p.V218V 0.25 TCGA-LN-A49M-01 15 75500090 75500090 A G C15orf39 Silent p.S567S 0.30 TCGA-LN-A49M-01 15 77057706 77057706 C G SCAPER Missense_Mutation p.E529Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-LN-A49M-01 15 77067388 77067388 C T SCAPER Silent p.V281V 0.38 TCGA-LN-A49M-01 15 90171751 90171751 C T KIF7 Missense_Mutation p.E1311K 0.22 tolerated(0.13) benign(0.11) TCGA-LN-A49M-01 15 90171829 90171829 C T KIF7 Missense_Mutation p.E1285K 0.27 tolerated(0.09) benign(0.05) TCGA-LN-A49M-01 15 90610643 90610643 G A ZNF710 Missense_Mutation p.E92K 0.32 deleterious_low_confidence(0.02) benign(0.239) TCGA-LN-A49M-01 16 11370120 11370120 C T PRM2 Silent p.L36L 0.35 TCGA-LN-A49M-01 16 15692750 15692750 C A KIAA0430 Missense_Mutation p.D1649Y 0.27 deleterious(0) possibly_damaging(0.899) TCGA-LN-A49M-01 16 22149768 22149768 C T VWA3A Nonsense_Mutation p.Q743* 0.32 TCGA-LN-A49M-01 16 2296896 2296896 C T ECI1 Silent p.E86E 0.38 TCGA-LN-A49M-01 16 25186294 25186294 G T LCMT1 Silent p.L307L 0.34 TCGA-LN-A49M-01 16 30380585 30380585 T C TBC1D10B Missense_Mutation p.Y307C 0.48 deleterious(0) probably_damaging(0.981) TCGA-LN-A49M-01 16 31142622 31142622 C T KAT8 3'UTR 0.28 TCGA-LN-A49M-01 16 320792 320792 G A RGS11 Nonsense_Mutation p.R340* 0.36 TCGA-LN-A49M-01 16 3487023 3487023 G A ZNF597 Missense_Mutation p.H226Y 0.54 tolerated(0.07) benign(0.033) TCGA-LN-A49M-01 16 50261884 50261884 T C PAPD5 Silent p.T630T 0.36 TCGA-LN-A49M-01 16 66586512 66586512 G A CKLF 5'UTR 0.32 TCGA-LN-A49M-01 16 68055590 68055590 G C DDX28 Missense_Mutation p.P506A 0.17 tolerated(0.08) benign(0.115) TCGA-LN-A49M-01 16 68371375 68371376 - T PRMT7 Frame_Shift_Ins p.C136Lfs*12 0.25 TCGA-LN-A49M-01 16 70187389 70187389 G A PDPR Silent p.E716E 0.27 TCGA-LN-A49M-01 16 71668213 71668213 A G MARVELD3 Intron 0.50 TCGA-LN-A49M-01 16 81173292 81173292 G C PKD1L2 5'Flank 0.36 TCGA-LN-A49M-01 16 84163981 84163981 G T HSDL1 Silent p.L92L 0.30 TCGA-LN-A49M-01 17 1561597 1561597 G C PRPF8 Missense_Mutation p.L1819V 0.27 tolerated(0.13) possibly_damaging(0.892) TCGA-LN-A49M-01 17 17150263 17150263 T A COPS3 3'UTR 0.50 TCGA-LN-A49M-01 17 18023041 18023041 C T MYO15A Silent p.Y309Y 0.49 TCGA-LN-A49M-01 17 19699506 19699506 C T ULK2 Silent p.S633S 0.57 TCGA-LN-A49M-01 17 34185297 34185297 G C C17orf66 Silent p.L353L 0.35 TCGA-LN-A49M-01 17 35900600 35900600 C T SYNRG Missense_Mutation p.R1083H 0.38 tolerated(0.12) benign(0.109) TCGA-LN-A49M-01 17 38652532 38652532 C T TNS4 Missense_Mutation p.G49E 0.41 tolerated(0.08) possibly_damaging(0.873) TCGA-LN-A49M-01 17 39505616 39505616 G C KRT33A Nonsense_Mutation p.S138* 0.29 TCGA-LN-A49M-01 17 39777080 39777080 G A KRT17 Nonsense_Mutation p.Q338* 0.38 TCGA-LN-A49M-01 17 45195869 45195869 G C CDC27 3'Flank 0.48 TCGA-LN-A49M-01 17 45451874 45451874 C G EFCAB13 Nonsense_Mutation p.S305* 0.31 TCGA-LN-A49M-01 17 45699893 45699893 C T NPEPPS 3'UTR 0.43 TCGA-LN-A49M-01 17 46134843 46134843 C T NFE2L1 Silent p.L317L 0.38 TCGA-LN-A49M-01 17 47007863 47007863 C G SNF8 Missense_Mutation p.E251Q 0.35 deleterious_low_confidence(0.03) benign(0.295) TCGA-LN-A49M-01 17 56400114 56400114 C T BZRAP1 Silent p.L406L 0.36 TCGA-LN-A49M-01 17 56581711 56581711 A T MTMR4 Missense_Mutation p.L480M 0.19 deleterious(0) probably_damaging(0.977) TCGA-LN-A49M-01 17 60032879 60032880 - A MED13 Frame_Shift_Ins p.M1944Ifs*36 0.30 TCGA-LN-A49M-01 17 61780982 61780982 C G STRADA Missense_Mutation p.E425Q 0.50 tolerated(0.08) possibly_damaging(0.501) TCGA-LN-A49M-01 17 7193791 7193791 G A YBX2 Missense_Mutation p.P175S 0.40 tolerated(0.08) possibly_damaging(0.641) TCGA-LN-A49M-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.37 TCGA-LN-A49M-01 17 7578527 7578527 A G TP53 Missense_Mutation p.C135R 0.40 deleterious(0) probably_damaging(1) TCGA-LN-A49M-01 17 8393817 8393817 C T MYH10 Missense_Mutation p.M1575I 0.28 probably_damaging(0.964) TCGA-LN-A49M-01 17 8791843 8791843 A T PIK3R5 Missense_Mutation p.F421I 0.34 tolerated(0.28) benign(0.038) TCGA-LN-A49M-01 18 19449390 19449390 G C MIB1 3'UTR 0.38 TCGA-LN-A49M-01 18 50731660 50731660 C T DCC Missense_Mutation p.P550S 0.45 tolerated(0.09) possibly_damaging(0.476) TCGA-LN-A49M-01 18 5406961 5406961 C A EPB41L3 Nonsense_Mutation p.E722* 0.31 TCGA-LN-A49M-01 19 10747198 10747198 C T SLC44A2 Missense_Mutation p.A478V 0.43 deleterious(0) benign(0.206) TCGA-LN-A49M-01 19 11591461 11591462 GG T ELAVL3 5'UTR 0.25 TCGA-LN-A49M-01 19 12739636 12739636 G A ZNF791 Missense_Mutation p.M431I 0.36 tolerated(0.11) benign(0.232) TCGA-LN-A49M-01 19 12940696 12940696 G C RTBDN Missense_Mutation p.P65R 0.31 tolerated(0.19) possibly_damaging(0.908) TCGA-LN-A49M-01 19 14676736 14676736 G A TECR 3'UTR 0.27 TCGA-LN-A49M-01 19 15083545 15083545 G A SLC1A6 Silent p.L60L 0.18 TCGA-LN-A49M-01 19 17038839 17038839 C T CPAMD8 Missense_Mutation p.R1164Q 0.26 deleterious(0.03) possibly_damaging(0.46) TCGA-LN-A49M-01 19 19823885 19823885 C G ZNF14 Missense_Mutation p.E69Q 0.26 tolerated(0.06) benign(0.214) TCGA-LN-A49M-01 19 22605125 22605125 C G ZNF98 5'UTR 0.44 TCGA-LN-A49M-01 19 31766581 31766581 G C TSHZ3 3'UTR 0.22 TCGA-LN-A49M-01 19 37904952 37904952 C G ZNF569 Missense_Mutation p.R203T 0.18 tolerated(0.57) possibly_damaging(0.9) TCGA-LN-A49M-01 19 38264380 38264380 G C ZNF573 5'UTR 0.29 TCGA-LN-A49M-01 19 39062663 39062663 C G RYR1 Nonsense_Mutation p.S4584* 0.35 TCGA-LN-A49M-01 19 40478056 40478056 G A PSMC4 Missense_Mutation p.E14K 0.22 tolerated_low_confidence(0.77) benign(0.001) TCGA-LN-A49M-01 19 40521329 40521329 G A ZNF546 Missense_Mutation p.E718K 0.37 deleterious(0.01) possibly_damaging(0.57) TCGA-LN-A49M-01 19 44126880 44126880 G A CADM4 3'UTR 0.30 TCGA-LN-A49M-01 19 44160758 44160758 G A PLAUR Silent p.L115L 0.47 TCGA-LN-A49M-01 19 44559295 44559295 C G ZNF223 5'UTR 0.39 TCGA-LN-A49M-01 19 45649660 45649660 C T PPP1R37 Missense_Mutation p.S669F 0.23 deleterious_low_confidence(0.01) unknown(0) TCGA-LN-A49M-01 19 49705305 49705305 C T TRPM4 Missense_Mutation p.S1013F 0.29 deleterious(0.01) possibly_damaging(0.845) TCGA-LN-A49M-01 19 54677178 54677178 G A MBOAT7 3'UTR 0.42 TCGA-LN-A49M-01 19 54744236 54744236 G A LILRA6 Missense_Mutation p.A391V 0.29 deleterious(0.05) benign(0.334) TCGA-LN-A49M-01 19 55853307 55853307 G A SUV420H2 Translation_Start_Site p.M1? 0.38 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-LN-A49M-01 19 56538599 56538599 G C NLRP5 Missense_Mutation p.E334Q 0.46 tolerated(0.16) possibly_damaging(0.562) TCGA-LN-A49M-01 19 8032642 8032642 C G ELAVL1 Missense_Mutation p.D155H 0.44 deleterious(0) probably_damaging(0.995) TCGA-LN-A49M-01 19 9073176 9073176 G T MUC16 Missense_Mutation p.P4757H 0.33 unknown(0) TCGA-LN-A49M-01 1 110931944 110931944 A G SLC16A4 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) benign(0.039) TCGA-LN-A49M-01 1 11288958 11288958 C T MTOR Missense_Mutation p.E933K 0.28 tolerated(0.12) probably_damaging(0.996) TCGA-LN-A49M-01 1 116916799 116916799 G A ATP1A1 5'UTR 0.28 TCGA-LN-A49M-01 1 148344692 148344692 G C NBPF20 Missense_Mutation p.Q76E 0.17 benign(0.111) TCGA-LN-A49M-01 1 149858228 149858228 G C HIST2H2BE 5'UTR 0.30 TCGA-LN-A49M-01 1 150192438 150192438 G A ANP32E 3'UTR 0.38 TCGA-LN-A49M-01 1 151134280 151134280 C T LYSMD1 Silent p.K159K 0.39 TCGA-LN-A49M-01 1 151314765 151314765 C T RFX5 Missense_Mutation p.G583E 0.36 tolerated_low_confidence(0.26) benign(0.005) TCGA-LN-A49M-01 1 154155547 154155547 G A TPM3 Intron 0.33 TCGA-LN-A49M-01 1 16271287 16271287 G A ZBTB17 Silent p.I325I 0.20 TCGA-LN-A49M-01 1 167674125 167674125 G A RCSD1 3'UTR 0.50 TCGA-LN-A49M-01 1 173638993 173638993 C T ANKRD45 5'UTR 0.19 TCGA-LN-A49M-01 1 19018262 19018262 G A PAX7 Missense_Mutation p.E201K 0.32 tolerated(0.06) benign(0.109) TCGA-LN-A49M-01 1 201791867 201791867 G A NAV1 3'UTR 0.32 TCGA-LN-A49M-01 1 204587876 204587876 C G LRRN2 Missense_Mutation p.E415D 0.28 tolerated(0.24) benign(0.276) TCGA-LN-A49M-01 1 205290766 205290766 G A NUAK2 5'UTR 0.45 TCGA-LN-A49M-01 1 211477433 211477433 G A RCOR3 Silent p.Q342Q 0.22 TCGA-LN-A49M-01 1 212125924 212125924 G A INTS7 Missense_Mutation p.P768L 0.29 tolerated(0.19) benign(0.204) TCGA-LN-A49M-01 1 21582529 21582529 C G ECE1 Missense_Mutation p.E311Q 0.27 deleterious(0) possibly_damaging(0.899) TCGA-LN-A49M-01 1 220791681 220791681 G A MARK1 Missense_Mutation p.M194I 0.26 deleterious(0.02) possibly_damaging(0.795) TCGA-LN-A49M-01 1 22416693 22416693 A G CDC42 Intron 0.50 TCGA-LN-A49M-01 1 24710447 24710447 G A STPG1 Missense_Mutation p.P79L 0.40 tolerated(0.12) probably_damaging(0.975) TCGA-LN-A49M-01 1 247151124 247151124 C T ZNF695 Silent p.K231K 0.40 TCGA-LN-A49M-01 1 248129321 248129321 C G OR2AK2 Missense_Mutation p.L230V 0.38 tolerated(0.62) benign(0.26) TCGA-LN-A49M-01 1 27087879 27087879 C T ARID1A Silent p.N722N 0.30 TCGA-LN-A49M-01 1 27216261 27216261 G A GPN2 Silent p.F109F 0.35 TCGA-LN-A49M-01 1 29631863 29631863 G A PTPRU Splice_Site p.X925_splice 0.42 TCGA-LN-A49M-01 1 35370161 35370161 G A DLGAP3 Missense_Mutation p.A275V 0.29 tolerated(0.62) benign(0.002) TCGA-LN-A49M-01 1 36859249 36859249 C G LSM10 3'UTR 0.41 TCGA-LN-A49M-01 1 36859680 36859680 C G LSM10 Silent p.L17L 0.29 TCGA-LN-A49M-01 1 38095476 38095476 C T RSPO1 5'UTR 0.31 TCGA-LN-A49M-01 1 38201051 38201051 C T EPHA10 Missense_Mutation p.E457K 0.32 deleterious(0.01) benign(0.36) TCGA-LN-A49M-01 1 38265236 38265236 C G MANEAL Intron 0.23 TCGA-LN-A49M-01 1 40034566 40034567 AT - PABPC4 Frame_Shift_Del p.F262Cfs*19 0.28 TCGA-LN-A49M-01 1 43162401 43162401 A G YBX1 Missense_Mutation p.Y148C 0.36 tolerated(0.16) probably_damaging(0.99) TCGA-LN-A49M-01 1 45269890 45269890 G C PLK3 Silent p.L438L 0.32 TCGA-LN-A49M-01 1 53980335 53980335 G C GLIS1 Missense_Mutation p.L441V 0.28 tolerated(0.12) probably_damaging(0.978) TCGA-LN-A49M-01 1 6172270 6172270 G A CHD5 Silent p.D1690D 0.42 TCGA-LN-A49M-01 1 6526924 6526924 G A PLEKHG5 3'Flank 0.20 TCGA-LN-A49M-01 1 6530391 6530391 C G PLEKHG5 Missense_Mutation p.D648H 0.39 deleterious(0) probably_damaging(0.996) TCGA-LN-A49M-01 1 6693086 6693086 C G THAP3 Missense_Mutation p.C223W 0.32 tolerated(0.18) benign(0.24) TCGA-LN-A49M-01 1 67279739 67279739 A G WDR78 3'UTR 0.26 TCGA-LN-A49M-01 1 83912348 83912348 C T RP11-413G15.1 RNA 0.16 TCGA-LN-A49M-01 1 84961569 84961569 G C RPF1 Missense_Mutation p.R235T 0.26 tolerated(0.12) benign(0.044) TCGA-LN-A49M-01 1 97771847 97771847 C T DPYD Missense_Mutation p.E689K 0.22 tolerated(0.19) benign(0.008) TCGA-LN-A49M-01 20 34090592 34090592 G A CEP250 Silent p.L1465L 0.31 TCGA-LN-A49M-01 20 34092542 34092542 G C CEP250 Missense_Mutation p.E2115D 0.19 possibly_damaging(0.46) TCGA-LN-A49M-01 20 47589702 47589702 A G ARFGEF2 Missense_Mutation p.I516V 0.37 deleterious(0.02) possibly_damaging(0.737) TCGA-LN-A49M-01 20 50048903 50048903 G A NFATC2 Missense_Mutation p.S808L 0.32 deleterious(0.04) possibly_damaging(0.449) TCGA-LN-A49M-01 20 54945045 54945045 G C AURKA 3'UTR 0.50 TCGA-LN-A49M-01 20 58342365 58342365 G A PHACTR3 Silent p.E222E 0.28 TCGA-LN-A49M-01 20 62591015 62591015 C T ZNF512B 3'UTR 0.34 TCGA-LN-A49M-01 21 34011322 34011322 T A SYNJ1 Missense_Mutation p.M1310L 0.27 tolerated_low_confidence(0.39) benign(0.001) TCGA-LN-A49M-01 21 38610793 38610793 C G DSCR3 Missense_Mutation p.E107Q 0.39 deleterious(0) probably_damaging(0.996) TCGA-LN-A49M-01 21 39754573 39754573 C G ERG 3'UTR 0.28 TCGA-LN-A49M-01 21 43305718 43305718 G C C2CD2 3'UTR 0.34 TCGA-LN-A49M-01 21 45878125 45878125 C T LRRC3 3'UTR 0.43 TCGA-LN-A49M-01 22 17072518 17072518 T C CCT8L2 Missense_Mutation p.D308G 0.24 deleterious(0.01) possibly_damaging(0.842) TCGA-LN-A49M-01 22 23917210 23917210 G C IGLL1 Missense_Mutation p.S89C 0.24 deleterious_low_confidence(0.05) benign(0.022) TCGA-LN-A49M-01 22 29678390 29678390 G C EWSR1 Missense_Mutation p.G148A 0.27 deleterious(0.01) probably_damaging(0.973) TCGA-LN-A49M-01 22 31592935 31592935 C G RNF185 Missense_Mutation p.P108A 0.33 deleterious(0) probably_damaging(0.996) TCGA-LN-A49M-01 22 31835930 31835930 T A EIF4ENIF1 Missense_Mutation p.Q965L 0.37 deleterious(0) probably_damaging(0.953) TCGA-LN-A49M-01 22 35684359 35684359 G A HMGXB4 Missense_Mutation p.E533K 0.22 deleterious(0) probably_damaging(0.993) TCGA-LN-A49M-01 22 38109392 38109392 G C TRIOBP Missense_Mutation p.D144H 0.12 tolerated_low_confidence(0.06) benign(0.124) TCGA-LN-A49M-01 22 38228688 38228688 C T ANKRD54 Missense_Mutation p.D262N 0.30 tolerated(0.16) benign(0.045) TCGA-LN-A49M-01 22 44330533 44330533 C T PNPLA3 Silent p.F248F 0.29 TCGA-LN-A49M-01 22 47054198 47054198 A G GRAMD4 Missense_Mutation p.K133R 0.30 tolerated(0.25) benign(0.012) TCGA-LN-A49M-01 22 50528851 50528851 C T MOV10L1 Intron 0.31 TCGA-LN-A49M-01 2 111907693 111907693 G A BCL2L11 Missense_Mutation p.G156E 0.32 deleterious(0) probably_damaging(1) TCGA-LN-A49M-01 2 120443383 120443383 C T TMEM177 3'Flank 0.25 TCGA-LN-A49M-01 2 132237645 132237645 G A TUBA3D Missense_Mutation p.D127N 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.684) TCGA-LN-A49M-01 2 140992352 140992352 C T LRP1B Intron 0.25 TCGA-LN-A49M-01 2 154334906 154334906 C T RPRM Silent p.Q58Q 0.31 TCGA-LN-A49M-01 2 15651430 15651430 G A NBAS Missense_Mutation p.S264L 0.29 deleterious(0) benign(0.075) TCGA-LN-A49M-01 2 174231980 174231980 C T CDCA7 Missense_Mutation p.H430Y 0.46 tolerated(0.86) probably_damaging(0.964) TCGA-LN-A49M-01 2 175427262 175427262 G C WIPF1 3'UTR 0.34 TCGA-LN-A49M-01 2 179667001 179667001 G A TTN Silent p.G53G 0.31 TCGA-LN-A49M-01 2 201688392 201688392 G A BZW1 3'Flank 0.21 TCGA-LN-A49M-01 2 202584797 202584797 G A ALS2 Intron 0.30 TCGA-LN-A49M-01 2 219757942 219757942 C T WNT10A Silent p.F401F 0.55 TCGA-LN-A49M-01 2 233321734 233321734 G A ALPI Silent p.T142T 0.52 TCGA-LN-A49M-01 2 42281407 42281407 G A PKDCC Missense_Mutation p.E332K 0.57 tolerated(0.14) benign(0.005) TCGA-LN-A49M-01 2 42931360 42931360 C G MTA3 Missense_Mutation p.S351C 0.34 tolerated(0.05) possibly_damaging(0.831) TCGA-LN-A49M-01 2 47129464 47129464 T C MCFD2 3'UTR 0.24 TCGA-LN-A49M-01 2 55439812 55439812 G C CLHC1 Missense_Mutation p.P166A 0.34 deleterious(0) probably_damaging(1) TCGA-LN-A49M-01 2 55746805 55746805 C G CCDC104 5'UTR 0.45 TCGA-LN-A49M-01 2 73518484 73518484 C G EGR4 3'UTR 0.57 TCGA-LN-A49M-01 2 75929334 75929334 C T GCFC2 Missense_Mutation p.E204K 0.31 deleterious(0.02) benign(0.055) TCGA-LN-A49M-01 2 8930037 8930037 A C KIDINS220 Missense_Mutation p.F532V 0.34 tolerated(0.1) benign(0.001) TCGA-LN-A49M-01 3 100554487 100554487 C G ABI3BP Intron 0.16 TCGA-LN-A49M-01 3 113376936 113376936 G T KIAA2018 Missense_Mutation p.S1198Y 0.38 possibly_damaging(0.526) TCGA-LN-A49M-01 3 123633065 123633065 C G CCDC14 3'Flank 0.33 TCGA-LN-A49M-01 3 123650025 123650025 C T CCDC14 Missense_Mutation p.E575K 0.32 deleterious(0) possibly_damaging(0.801) TCGA-LN-A49M-01 3 123813618 123813618 C G KALRN 5'UTR 0.33 TCGA-LN-A49M-01 3 129695539 129695539 C G TRH Intron 0.33 TCGA-LN-A49M-01 3 135867782 135867782 T C MSL2 3'UTR 0.51 TCGA-LN-A49M-01 3 14106434 14106434 G A TPRXL Silent p.%3D 0.25 TCGA-LN-A49M-01 3 160232848 160232848 C T KPNA4 Intron 0.18 TCGA-LN-A49M-01 3 169820479 169820479 G C PHC3 Missense_Mutation p.S874C 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-LN-A49M-01 3 172350567 172350567 T C NCEH1 3'UTR 0.49 TCGA-LN-A49M-01 3 178948136 178948136 G A PIK3CA Missense_Mutation p.E970K 0.44 tolerated(0.51) benign(0.05) TCGA-LN-A49M-01 3 183602518 183602518 G A PARL Silent p.L39L 0.51 TCGA-LN-A49M-01 3 183958839 183958839 C T VWA5B2 Missense_Mutation p.P969L 0.29 tolerated(0.73) benign(0.001) TCGA-LN-A49M-01 3 184101106 184101107 AA - CHRD Frame_Shift_Del p.S408Cfs*6 0.43 TCGA-LN-A49M-01 3 193409881 193409881 G C OPA1 Missense_Mutation p.D987H 0.54 deleterious(0) benign(0.017) TCGA-LN-A49M-01 3 44671001 44671001 G A ZNF197 Missense_Mutation p.E119K 0.29 deleterious(0.03) benign(0.26) TCGA-LN-A49M-01 4 145640083 145640083 C T HHIP Missense_Mutation p.L579F 0.28 deleterious(0.01) benign(0.165) TCGA-LN-A49M-01 4 151271258 151271258 A G LRBA Silent p.I2427I 0.52 TCGA-LN-A49M-01 4 17579145 17579145 G C LAP3 Silent p.V19V 0.62 TCGA-LN-A49M-01 4 41957645 41957645 G A TMEM33 3'UTR 0.52 TCGA-LN-A49M-01 4 71849087 71849087 T G MOB1B 3'Flank 0.50 TCGA-LN-A49M-01 4 78647324 78647324 G T CNOT6L Missense_Mutation p.F484L 0.50 deleterious(0) probably_damaging(0.999) TCGA-LN-A49M-01 4 79832424 79832424 A G BMP2K Missense_Mutation p.N908S 0.50 tolerated_low_confidence(0.97) unknown(0) TCGA-LN-A49M-01 4 87686556 87686556 G A PTPN13 Silent p.V1391V 0.64 TCGA-LN-A49M-01 5 10403651 10403651 G C MARCH6 Missense_Mutation p.E444Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-LN-A49M-01 5 118729075 118729075 G A TNFAIP8 Silent p.%3D 0.57 TCGA-LN-A49M-01 5 137211532 137211532 C T MYOT Missense_Mutation p.S124L 0.30 tolerated(0.28) benign(0.002) TCGA-LN-A49M-01 5 138266577 138266577 G A CTNNA1 Missense_Mutation p.E751K 0.13 deleterious(0.04) possibly_damaging(0.588) TCGA-LN-A49M-01 5 140603611 140603611 C G PCDHB14 Missense_Mutation p.F178L 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.717) TCGA-LN-A49M-01 5 140603882 140603882 C G PCDHB14 Missense_Mutation p.L269V 0.11 tolerated_low_confidence(0.13) benign(0.17) TCGA-LN-A49M-01 5 153030051 153030051 C T GRIA1 Missense_Mutation p.R218C 0.59 deleterious(0.01) possibly_damaging(0.759) TCGA-LN-A49M-01 5 169661118 169661119 - T C5orf58 5'UTR 0.45 TCGA-LN-A49M-01 5 21842384 21842384 G A CDH12 Nonsense_Mutation p.Q234* 0.39 TCGA-LN-A49M-01 5 35049202 35049202 C T AGXT2 5'Flank 0.59 TCGA-LN-A49M-01 5 55247381 55247385 CTAGT - IL6ST Frame_Shift_Del p.T583* 0.30 TCGA-LN-A49M-01 5 57750116 57750116 C T PLK2 3'UTR 0.28 TCGA-LN-A49M-01 5 64081312 64081312 C T CWC27 Missense_Mutation p.T134I 0.40 deleterious(0) possibly_damaging(0.828) TCGA-LN-A49M-01 5 96108510 96108510 G C CAST 3'UTR 0.45 TCGA-LN-A49M-01 6 100016540 100016540 G A CCNC 5'UTR 0.29 TCGA-LN-A49M-01 6 100395746 100395746 C T MCHR2 Missense_Mutation p.R95Q 0.40 tolerated(0.45) benign(0.023) TCGA-LN-A49M-01 6 100911391 100911391 C T SIM1 5'UTR 0.26 TCGA-LN-A49M-01 6 102337692 102337692 C T GRIK2 Silent p.L568L 0.30 TCGA-LN-A49M-01 6 112672181 112672181 G A RFPL4B 3'UTR 0.26 TCGA-LN-A49M-01 6 118029666 118029666 A G NUS1 3'UTR 0.32 TCGA-LN-A49M-01 6 118886706 118886706 C G CEP85L Missense_Mutation p.E339Q 0.24 tolerated(0.07) possibly_damaging(0.686) TCGA-LN-A49M-01 6 12121877 12121877 G A HIVEP1 Missense_Mutation p.E617K 0.27 tolerated(0.08) possibly_damaging(0.698) TCGA-LN-A49M-01 6 142525187 142525187 A C VTA1 Missense_Mutation p.N255H 0.39 tolerated(0.19) possibly_damaging(0.764) TCGA-LN-A49M-01 6 146956593 146956593 G A ADGB Missense_Mutation p.E53K 0.31 deleterious(0) probably_damaging(0.972) TCGA-LN-A49M-01 6 160501186 160501186 C G IGF2R Silent p.V1904V 0.41 TCGA-LN-A49M-01 6 16129565 16129565 T C MYLIP Silent p.Y4Y 0.36 TCGA-LN-A49M-01 6 27839638 27839638 A G HIST1H3I 3'UTR 0.60 TCGA-LN-A49M-01 6 3006787 3006787 A G NQO2 Translation_Start_Site p.M1? 0.40 tolerated(0.09) benign(0.002) TCGA-LN-A49M-01 6 30864803 30864803 G A DDR1 Missense_Mutation p.E628K 0.37 deleterious(0) possibly_damaging(0.622) TCGA-LN-A49M-01 6 30917575 30917575 G C DPCR1 Missense_Mutation p.R445T 0.36 tolerated(0.49) unknown(0) TCGA-LN-A49M-01 6 31600709 31600709 G C PRRC2A Missense_Mutation p.G1420A 0.50 unknown(0) TCGA-LN-A49M-01 6 33374170 33374170 C T KIFC1 Silent p.L578L 0.37 TCGA-LN-A49M-01 6 34003781 34003781 G C GRM4 Missense_Mutation p.I702M 0.27 deleterious(0) probably_damaging(0.975) TCGA-LN-A49M-01 6 41651979 41651979 C G TFEB 3'UTR 0.50 TCGA-LN-A49M-01 6 4943930 4943930 C T CDYL Silent p.F424F 0.39 TCGA-LN-A49M-01 6 56535438 56535438 C G DST Splice_Site p.X194_splice 0.29 TCGA-LN-A49M-01 6 7583820 7583820 G A DSP Missense_Mutation p.E2109K 0.44 possibly_damaging(0.524) TCGA-LN-A49M-01 6 87970002 87970002 G A ZNF292 Missense_Mutation p.D2219N 0.40 deleterious(0.03) probably_damaging(1) TCGA-LN-A49M-01 7 1024706 1024706 G T CYP2W1 Missense_Mutation p.C153F 0.27 tolerated(0.74) benign(0.006) TCGA-LN-A49M-01 7 134878362 134878362 G A WDR91 Silent p.L486L 0.22 TCGA-LN-A49M-01 7 137686398 137686398 C T CREB3L2 Silent p.L18L 0.27 TCGA-LN-A49M-01 7 140269453 140269453 G C DENND2A Nonsense_Mutation p.S511* 0.29 TCGA-LN-A49M-01 7 140378976 140378976 C T ADCK2 Nonsense_Mutation p.Q368* 0.31 TCGA-LN-A49M-01 7 142176408 142176408 C G TRBV7-4 Missense_Mutation p.E90Q 0.29 tolerated(0.18) benign(0.194) TCGA-LN-A49M-01 7 142612479 142612479 G A TRPV5 Silent p.I428I 0.41 TCGA-LN-A49M-01 7 16445718 16445718 G C ISPD Missense_Mutation p.L168V 0.37 tolerated(0.11) benign(0.232) TCGA-LN-A49M-01 7 27147685 27147685 C T HOXA3 Missense_Mutation p.G394D 0.32 deleterious(0.01) benign(0.023) TCGA-LN-A49M-01 7 27210226 27210226 C A HOXA10 3'UTR 0.37 TCGA-LN-A49M-01 7 38725305 38725305 C T FAM183B Missense_Mutation p.D101N 0.29 tolerated(1) benign(0) TCGA-LN-A49M-01 7 39991112 39991112 C T CDK13 Missense_Mutation p.S291L 0.50 tolerated(0.12) unknown(0) TCGA-LN-A49M-01 7 5336607 5336607 G A SLC29A4 Silent p.T220T 0.07 TCGA-LN-A49M-01 7 5427355 5427355 C T TNRC18 Silent p.L700L 0.26 TCGA-LN-A49M-01 7 5920515 5920515 T C OCM 5'UTR 0.36 TCGA-LN-A49M-01 7 65617254 65617254 C T CRCP Silent p.T119T 0.30 TCGA-LN-A49M-01 7 87436700 87436700 G A RUNDC3B Silent p.K340K 0.32 TCGA-LN-A49M-01 7 88389161 88389161 T A ZNF804B 5'UTR 0.34 TCGA-LN-A49M-01 7 93551419 93551419 G T GNG11 5'UTR 0.37 TCGA-LN-A49M-01 7 94184821 94184821 T A CASD1 Nonsense_Mutation p.Y715* 0.36 TCGA-LN-A49M-01 7 98509816 98509816 G A TRRAP Missense_Mutation p.E727K 0.34 possibly_damaging(0.81) TCGA-LN-A49M-01 8 122626754 122626754 G A HAS2 Silent p.L418L 0.21 TCGA-LN-A49M-01 8 122626768 122626768 G A HAS2 Nonsense_Mutation p.Q414* 0.28 TCGA-LN-A49M-01 8 125033904 125033904 G A FER1L6 Missense_Mutation p.D710N 0.24 deleterious(0.01) possibly_damaging(0.48) TCGA-LN-A49M-01 8 133187730 133187730 C G KCNQ3 Missense_Mutation p.E301D 0.23 tolerated(0.69) benign(0.137) TCGA-LN-A49M-01 8 139603732 139603732 G C COL22A1 Missense_Mutation p.A1543G 0.14 unknown(0) TCGA-LN-A49M-01 8 145622125 145622125 A G CPSF1 Missense_Mutation p.L871P 0.24 deleterious(0) probably_damaging(0.99) TCGA-LN-A49M-01 8 146032926 146032926 G C ZNF517 Missense_Mutation p.E209Q 0.25 tolerated(0.26) benign(0.406) TCGA-LN-A49M-01 8 2830754 2830754 A G CSMD1 Silent p.F2936F 0.72 TCGA-LN-A49M-01 8 38369630 38369630 T A C8orf86 3'UTR 0.30 TCGA-LN-A49M-01 8 42940448 42940448 G C FNTA 3'UTR 0.64 TCGA-LN-A49M-01 8 59515783 59515783 G A NSMAF Missense_Mutation p.S375F 0.33 tolerated(0.15) benign(0.005) TCGA-LN-A49M-01 8 6289088 6289088 C G MCPH1 Nonsense_Mutation p.S101* 0.55 TCGA-LN-A49M-01 8 86118428 86118428 C T E2F5 Missense_Mutation p.H175Y 0.17 tolerated(0.13) benign(0.013) TCGA-LN-A49M-01 8 87229753 87229753 C T SLC7A13 Missense_Mutation p.M375I 0.42 tolerated(0.1) benign(0.05) TCGA-LN-A49M-01 8 88886083 88886083 G A DCAF4L2 Silent p.F39F 0.34 TCGA-LN-A49M-01 8 93074912 93074912 G A RUNX1T1 Intron 0.31 TCGA-LN-A49M-01 8 99033468 99033468 G A MATN2 Missense_Mutation p.E619K 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-LN-A49M-01 9 106901433 106901433 C T SMC2 Missense_Mutation p.S1144L 0.38 deleterious(0) probably_damaging(0.999) TCGA-LN-A49M-01 9 124241446 124241446 G A GGTA1P RNA 0.30 TCGA-LN-A49M-01 9 130578263 130578263 G T ENG Missense_Mutation p.A604D 0.33 deleterious(0) probably_damaging(0.986) TCGA-LN-A49M-01 9 130578264 130578264 C T ENG Missense_Mutation p.A604T 0.34 deleterious(0) probably_damaging(0.927) TCGA-LN-A49M-01 9 130698040 130698040 C T DPM2 Silent p.V72V 0.17 TCGA-LN-A49M-01 9 131834225 131834226 - T FAM73B 3'UTR 0.30 TCGA-LN-A49M-01 9 138011671 138011671 G A OLFM1 Missense_Mutation p.A351T 0.29 tolerated(0.66) probably_damaging(0.948) TCGA-LN-A49M-01 9 139282959 139282959 C T SNAPC4 Missense_Mutation p.D354N 0.39 deleterious(0) probably_damaging(1) TCGA-LN-A49M-01 9 16437354 16437354 A G BNC2 Missense_Mutation p.S280P 0.51 tolerated(0.1) probably_damaging(0.987) TCGA-LN-A49M-01 9 27158043 27158043 G C TEK Missense_Mutation p.K89N 0.60 deleterious(0.01) possibly_damaging(0.558) TCGA-LN-A49M-01 9 33676330 33676330 T C PTENP1 RNA 0.57 TCGA-LN-A49M-01 9 7013942 7013942 A T KDM4C Missense_Mutation p.E708V 0.36 deleterious(0.04) possibly_damaging(0.575) TCGA-LN-A49M-01 9 71396510 71396510 G C FAM122A 3'UTR 0.37 TCGA-LN-A49M-01 9 71397219 71397219 G A FAM122A 3'UTR 0.43 TCGA-LN-A49M-01 9 74863633 74863633 T C GDA Intron 0.64 TCGA-LN-A49M-01 9 90252871 90252871 G A DAPK1 Missense_Mutation p.E100K 0.59 deleterious(0) probably_damaging(0.998) TCGA-LN-A49M-01 X 112024179 112024179 G A AMOT Missense_Mutation p.S803F 0.36 unknown(0) TCGA-LN-A49M-01 X 128885744 128885744 G C XPNPEP2 Missense_Mutation p.D255H 0.50 deleterious(0) probably_damaging(0.999) TCGA-LN-A49M-01 X 141290896 141290896 G A MAGEC2 Missense_Mutation p.S293F 0.29 deleterious(0) probably_damaging(0.939) TCGA-LN-A49M-01 X 14627271 14627271 A T GLRA2 Missense_Mutation p.T292S 0.67 deleterious(0) probably_damaging(0.917) TCGA-LN-A49M-01 X 146340315 146340315 T G MIR509-2 RNA 0.30 TCGA-LN-A49M-01 X 153171021 153171021 A G AVPR2 Missense_Mutation p.S21G 0.07 tolerated(0.74) benign(0) TCGA-LN-A49M-01 X 153287340 153287340 T C IRAK1 5'Flank 0.28 TCGA-LN-A49M-01 X 153589759 153589759 C A FLNA Nonsense_Mutation p.E1042* 0.18 TCGA-LN-A49M-01 X 15403203 15403203 G C PIR Missense_Mutation p.Q266E 0.76 tolerated(0.11) benign(0.002) TCGA-LN-A49M-01 X 20030483 20030483 G A MAP7D2 Nonsense_Mutation p.Q686* 0.67 TCGA-LN-A49M-01 X 64722232 64722232 T C ZC3H12B Missense_Mutation p.F552L 0.80 deleterious(0) benign(0.033) TCGA-LN-A49M-01 X 69263824 69263824 C G AWAT2 Silent p.V73V 0.62 TCGA-LN-A49M-01 X 69723646 69723646 C T DLG3 3'UTR 0.62 TCGA-LN-A49M-01 X 69871378 69871378 C T TEX11 Missense_Mutation p.E484K 0.66 deleterious(0.03) possibly_damaging(0.874) TCGA-LN-A49M-01 X 83361419 83361419 C A RPS6KA6 Missense_Mutation p.C440F 0.44 deleterious(0) probably_damaging(1) TCGA-LN-A49N-01 10 134755135 134755135 C A TTC40 Missense_Mutation p.C89F 0.23 deleterious(0) probably_damaging(1) TCGA-LN-A49N-01 10 73497503 73497503 T G C10orf105 5'UTR 0.28 TCGA-LN-A49N-01 10 76792088 76792088 A G KAT6B 3'UTR 0.22 TCGA-LN-A49N-01 10 97967644 97967644 G A BLNK Missense_Mutation p.T253M 0.10 tolerated(0.08) benign(0.004) TCGA-LN-A49N-01 11 108203581 108203581 T C ATM Silent p.Y2627Y 0.28 TCGA-LN-A49N-01 11 76370908 76370908 C T LRRC32 Missense_Mutation p.G577S 0.29 tolerated(0.19) benign(0.115) TCGA-LN-A49N-01 12 12311822 12311822 C - LRP6 Frame_Shift_Del p.G911Vfs*38 0.25 TCGA-LN-A49N-01 12 15070212 15070224 ACGCTGTTGAATA - ERP27 Frame_Shift_Del p.L155* 0.15 TCGA-LN-A49N-01 12 16043540 16043540 T G STRAP Missense_Mutation p.Y114D 0.24 tolerated(0.19) benign(0.173) TCGA-LN-A49N-01 12 45695847 45695847 A T ANO6 Missense_Mutation p.S62C 0.22 deleterious(0.02) benign(0.302) TCGA-LN-A49N-01 12 49229911 49229911 T C DDX23 Missense_Mutation p.I459V 0.37 deleterious(0.02) benign(0.309) TCGA-LN-A49N-01 14 20215877 20215877 A G OR4Q3 Silent p.G97G 0.09 TCGA-LN-A49N-01 15 56435084 56435085 - TG RFX7 Frame_Shift_Ins p.M98Tfs*20 0.26 TCGA-LN-A49N-01 15 74336717 74336717 A G PML Missense_Mutation p.I673V 0.24 tolerated(0.3) benign(0.015) TCGA-LN-A49N-01 15 79750680 79750680 A T KIAA1024 Nonsense_Mutation p.R731* 0.25 TCGA-LN-A49N-01 15 89804864 89804864 A G FANCI Missense_Mutation p.I113V 0.21 tolerated(1) benign(0.002) TCGA-LN-A49N-01 16 53860093 53860093 G T FTO Missense_Mutation p.Q147H 0.40 tolerated(0.63) possibly_damaging(0.766) TCGA-LN-A49N-01 16 55361662 55361662 T A IRX6 Missense_Mutation p.V193E 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A49N-01 16 740386 740386 C T WDR24 5'UTR 0.23 TCGA-LN-A49N-01 17 45235625 45235625 C G CDC27 Missense_Mutation p.S141T 0.36 deleterious(0.02) possibly_damaging(0.574) TCGA-LN-A49N-01 17 5462637 5462637 G T NLRP1 Missense_Mutation p.T460N 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-LN-A49N-01 17 73827330 73827330 G A UNC13D Silent p.A849A 0.40 TCGA-LN-A49N-01 17 7577527 7577528 GG T TP53 Frame_Shift_Del p.L252Sfs*93 0.37 TCGA-LN-A49N-01 18 23873435 23873435 C T TAF4B Missense_Mutation p.S591L 0.07 deleterious(0) possibly_damaging(0.884) TCGA-LN-A49N-01 18 60795795 60795795 G T BCL2 3'UTR 0.21 TCGA-LN-A49N-01 19 33134495 33134495 G A ANKRD27 Silent p.L190L 0.27 TCGA-LN-A49N-01 19 45860787 45860787 G A ERCC2 Missense_Mutation p.S441L 0.26 deleterious(0.01) possibly_damaging(0.852) TCGA-LN-A49N-01 19 54255702 54255702 G A MIR519A1 RNA 0.20 TCGA-LN-A49N-01 19 54968055 54968055 G C LENG8 Silent p.L562L 0.29 TCGA-LN-A49N-01 1 202302447 202302447 G T UBE2T Missense_Mutation p.S101Y 0.21 deleterious(0) probably_damaging(0.964) TCGA-LN-A49N-01 1 243303566 243303566 A C CEP170 Intron 0.17 TCGA-LN-A49N-01 1 39775986 39775986 C T MACF1 Silent p.L1001L 0.29 TCGA-LN-A49N-01 1 47138746 47138746 C G TEX38 Missense_Mutation p.A80G 0.20 tolerated(0.1) possibly_damaging(0.783) TCGA-LN-A49N-01 1 75039106 75039106 A G C1orf173 Missense_Mutation p.V763A 0.11 tolerated(1) benign(0) TCGA-LN-A49N-01 20 861854 861854 A G ANGPT4 Missense_Mutation p.V304A 0.22 deleterious(0) possibly_damaging(0.903) TCGA-LN-A49N-01 22 16287537 16287537 C T POTEH Missense_Mutation p.V117M 0.14 tolerated_low_confidence(0.07) benign(0.086) TCGA-LN-A49N-01 2 1204912 1204912 T A SNTG2 Missense_Mutation p.L239I 0.31 deleterious(0.02) benign(0.068) TCGA-LN-A49N-01 2 179571596 179571596 G A TTN Silent p.V9709V 0.16 TCGA-LN-A49N-01 2 187543403 187543403 A G ITGAV 3'UTR 0.22 TCGA-LN-A49N-01 2 192279278 192279278 T C MYO1B Silent p.N1014N 0.18 TCGA-LN-A49N-01 2 204259537 204259537 A C ABI2 Silent p.T225T 0.14 TCGA-LN-A49N-01 2 48040404 48040405 - TC FBXO11 Frame_Shift_Ins p.D732Efs*38 0.12 TCGA-LN-A49N-01 2 5841194 5841194 A T SOX11 3'UTR 0.15 TCGA-LN-A49N-01 3 11372893 11372893 C A ATG7 Missense_Mutation p.A253D 0.25 tolerated(0.07) benign(0.379) TCGA-LN-A49N-01 3 123632984 123632984 G A CCDC14 3'Flank 0.26 TCGA-LN-A49N-01 3 132297707 132297707 C T ACAD11 Missense_Mutation p.M569I 0.11 deleterious(0.03) possibly_damaging(0.52) TCGA-LN-A49N-01 3 138116171 138116171 G A MRAS Missense_Mutation p.D67N 0.24 deleterious(0) probably_damaging(1) TCGA-LN-A49N-01 3 139077077 139077077 T C COPB2 Missense_Mutation p.I864V 0.21 tolerated(1) benign(0) TCGA-LN-A49N-01 3 184102443 184102443 C A CHRD Missense_Mutation p.A520D 0.24 tolerated(0.41) possibly_damaging(0.609) TCGA-LN-A49N-01 3 18436270 18436270 C T SATB1 Missense_Mutation p.R297Q 0.23 tolerated(0.12) possibly_damaging(0.787) TCGA-LN-A49N-01 3 185252682 185252682 G C LIPH Silent p.L96L 0.06 TCGA-LN-A49N-01 3 30691947 30691947 C G TGFBR2 Nonsense_Mutation p.S175* 0.17 TCGA-LN-A49N-01 3 63986059 63986059 A G ATXN7 3'UTR 0.48 TCGA-LN-A49N-01 4 110427592 110427592 A G SEC24B Missense_Mutation p.I533V 0.24 tolerated(0.38) benign(0.001) TCGA-LN-A49N-01 4 159624578 159624579 - T ETFDH Frame_Shift_Ins p.P375Tfs*14 0.23 TCGA-LN-A49N-01 4 169138093 169138093 G C DDX60 Missense_Mutation p.N1710K 0.14 tolerated(0.88) benign(0.001) TCGA-LN-A49N-01 4 187078796 187078796 G A FAM149A Missense_Mutation p.D218N 0.38 tolerated(0.05) benign(0.133) TCGA-LN-A49N-01 5 156770149 156770149 G A FNDC9 Silent p.C132C 0.17 TCGA-LN-A49N-01 5 56469848 56469848 C G Y_RNA 5'Flank 0.35 TCGA-LN-A49N-01 6 105177312 105177312 A G HACE1 3'UTR 0.20 TCGA-LN-A49N-01 6 11201147 11201147 C T NEDD9 Intron 0.39 TCGA-LN-A49N-01 6 132859987 132859987 G T TAAR9 Missense_Mutation p.V187L 0.32 tolerated(0.06) benign(0.095) TCGA-LN-A49N-01 6 147632620 147632620 C A STXBP5 Missense_Mutation p.L368I 0.11 deleterious(0) probably_damaging(0.983) TCGA-LN-A49N-01 6 38874095 38874095 G C DNAH8 Missense_Mutation p.G2870A 0.29 possibly_damaging(0.651) TCGA-LN-A49N-01 7 11486945 11486945 C T THSD7A Silent p.Q904Q 0.29 TCGA-LN-A49N-01 7 116559239 116559239 A T CAPZA2 3'UTR 0.33 TCGA-LN-A49N-01 7 150725613 150725613 A G ABCB8 Missense_Mutation p.H4R 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-LN-A49N-01 7 27148113 27148113 C T HOXA3 Silent p.K251K 0.39 TCGA-LN-A49N-01 7 92190856 92190856 T A FAM133B 3'UTR 0.28 TCGA-LN-A49N-01 8 3200963 3200963 C A CSMD1 Nonsense_Mutation p.G1162* 0.26 TCGA-LN-A49N-01 8 99039880 99039880 T C MATN2 Missense_Mutation p.Y727H 0.28 tolerated(0.18) probably_damaging(1) TCGA-LN-A49N-01 9 130826154 130826154 C T NAIF1 Silent p.T179T 0.44 TCGA-LN-A49N-01 9 139402553 139402553 A T NOTCH1 Missense_Mutation p.C1122S 0.69 deleterious(0) probably_damaging(1) TCGA-LN-A49N-01 9 16419544 16419544 C G BNC2 Missense_Mutation p.E915Q 0.23 tolerated(0.19) probably_damaging(0.979) TCGA-LN-A49N-01 X 2408163 2408169 TGTCGGT C ZBED1 In_Frame_Del p.T198_M200delinsV 0.36 TCGA-LN-A49N-01 X 49645918 49645918 G A USP27X Silent p.T336T 0.50 TCGA-LN-A49O-01 10 112837931 112837931 G T ADRA2A Missense_Mutation p.M59I 0.24 tolerated(1) benign(0.001) TCGA-LN-A49O-01 10 120792374 120792374 G C NANOS1 3'UTR 0.74 TCGA-LN-A49O-01 10 21802640 21802640 A - SKIDA1 3'UTR 0.40 TCGA-LN-A49O-01 10 38680984 38680984 G A SEPT7P9 RNA 0.21 TCGA-LN-A49O-01 10 55849756 55849756 T C PCDH15 Missense_Mutation p.N662S 0.50 tolerated(0.42) benign(0.217) TCGA-LN-A49O-01 10 5807199 5807199 T C GDI2 3'UTR 0.20 TCGA-LN-A49O-01 10 62648194 62648194 A G RHOBTB1 Missense_Mutation p.F411S 0.46 deleterious(0) probably_damaging(0.999) TCGA-LN-A49O-01 10 63855176 63855176 A G ARID5B 3'UTR 0.57 TCGA-LN-A49O-01 10 75677220 75677220 A G PLAU 3'UTR 0.36 TCGA-LN-A49O-01 11 125887056 125887056 G T CDON Silent p.S285S 0.25 TCGA-LN-A49O-01 11 131530893 131530893 C T AP003039.3 3'Flank 0.38 TCGA-LN-A49O-01 11 132184551 132184551 G T NTM Silent p.V296V 0.21 TCGA-LN-A49O-01 11 17394103 17394103 C T NCR3LG1 3'UTR 0.56 TCGA-LN-A49O-01 11 55890163 55890163 C G OR8H3 Silent p.V105V 0.31 TCGA-LN-A49O-01 11 63531137 63531137 C A RTN3 3'Flank 0.57 TCGA-LN-A49O-01 11 72466800 72466800 T C STARD10 Splice_Site p.X193_splice 0.47 TCGA-LN-A49O-01 12 124826549 124826549 T C NCOR2 Missense_Mutation p.I1670V 0.54 possibly_damaging(0.544) TCGA-LN-A49O-01 12 1755098 1755098 G A WNT5B Missense_Mutation p.A254T 0.28 tolerated(0.36) possibly_damaging(0.782) TCGA-LN-A49O-01 12 53647345 53647345 C T MFSD5 Silent p.C349C 0.11 TCGA-LN-A49O-01 12 62799539 62799539 A T USP15 3'UTR 0.22 TCGA-LN-A49O-01 12 8196342 8196342 A G FOXJ2 Missense_Mutation p.R152G 0.45 deleterious(0) probably_damaging(0.989) TCGA-LN-A49O-01 14 20711735 20711735 A G OR11H4 Missense_Mutation p.Y262C 0.73 deleterious(0.02) benign(0.182) TCGA-LN-A49O-01 14 24620076 24620076 C T RNF31 Silent p.L489L 0.83 TCGA-LN-A49O-01 14 52471568 52471568 A T NID2 3'UTR 0.30 TCGA-LN-A49O-01 14 65542003 65542003 T C MAX 3'Flank 0.52 TCGA-LN-A49O-01 14 94942497 94942497 C A SERPINA9 Missense_Mutation p.G5C 0.26 deleterious_low_confidence(0.02) benign(0.418) TCGA-LN-A49O-01 15 40685826 40685826 T C KNSTRN 3'UTR 0.35 TCGA-LN-A49O-01 15 41775265 41775265 A T RTF1 3'UTR 0.36 TCGA-LN-A49O-01 15 77096904 77096904 T A SCAPER Missense_Mutation p.E155V 0.18 deleterious(0) possibly_damaging(0.858) TCGA-LN-A49O-01 15 89074355 89074355 A G DET1 Silent p.H205H 0.41 TCGA-LN-A49O-01 16 318798 318798 A T ITFG3 Missense_Mutation p.R491W 0.33 tolerated(0.09) benign(0.011) TCGA-LN-A49O-01 16 57806195 57806195 T C KIFC3 Silent p.E107E 0.19 TCGA-LN-A49O-01 16 58615277 58615277 T C CNOT1 Missense_Mutation p.Y396C 0.22 deleterious(0.05) possibly_damaging(0.538) TCGA-LN-A49O-01 16 69173784 69173785 - T CIRH1A Frame_Shift_Ins p.D166Rfs*4 0.19 TCGA-LN-A49O-01 16 75563364 75563364 G A CHST5 Missense_Mutation p.R307C 0.29 deleterious(0.03) probably_damaging(0.959) TCGA-LN-A49O-01 16 83711879 83711879 G A CDH13 Missense_Mutation p.V498I 0.24 tolerated(0.21) benign(0.089) TCGA-LN-A49O-01 17 17701660 17701660 G A RAI1 Missense_Mutation p.D1800N 0.26 deleterious(0.01) possibly_damaging(0.484) TCGA-LN-A49O-01 17 43922586 43922586 C T SPPL2C Missense_Mutation p.T105M 0.76 deleterious(0.01) possibly_damaging(0.883) TCGA-LN-A49O-01 17 57189207 57189207 A G SKA2 3'UTR 0.64 TCGA-LN-A49O-01 17 62800958 62800958 C T PLEKHM1P RNA 0.34 TCGA-LN-A49O-01 17 73774627 73774628 - AAGTATTTTT H3F3B 3'UTR 0.53 TCGA-LN-A49O-01 17 7578403 7578403 C T TP53 Missense_Mutation p.C176Y 0.77 deleterious(0) probably_damaging(0.995) TCGA-LN-A49O-01 17 78328011 78328011 C G RNF213 Intron 0.73 TCGA-LN-A49O-01 17 78360667 78360667 G T RNF213 Missense_Mutation p.Q4966H 0.68 probably_damaging(0.987) TCGA-LN-A49O-01 17 80790098 80790131 TGGTTGGTTTGCTTGGGGTCTAGTGAGTTAGATT - ZNF750 Frame_Shift_Del p.K67Sfs*288 0.55 TCGA-LN-A49O-01 18 13015442 13015442 C G CEP192 Missense_Mutation p.S212C 0.53 deleterious(0) probably_damaging(0.983) TCGA-LN-A49O-01 19 12576489 12576489 T C ZNF709 Missense_Mutation p.I83V 0.53 tolerated(0.11) benign(0) TCGA-LN-A49O-01 19 14037327 14037327 A G CC2D1A Intron 0.48 TCGA-LN-A49O-01 19 17692130 17692130 C T COLGALT1 Silent p.V582V 0.22 TCGA-LN-A49O-01 19 18119840 18119840 C A ARRDC2 Silent p.T134T 0.45 TCGA-LN-A49O-01 19 44470083 44470083 C T ZNF221 Silent p.S143S 0.39 TCGA-LN-A49O-01 19 5131966 5131966 G A KDM4B Silent p.P618P 0.43 TCGA-LN-A49O-01 19 58595787 58595787 C A ZSCAN18 3'Flank 0.34 TCGA-LN-A49O-01 1 11333860 11333860 T A UBIAD1 Missense_Mutation p.V91D 0.51 deleterious(0) probably_damaging(0.969) TCGA-LN-A49O-01 1 150529724 150529724 C T ADAMTSL4 Missense_Mutation p.P654S 0.29 tolerated(0.07) benign(0.341) TCGA-LN-A49O-01 1 152279527 152279527 T C FLG Missense_Mutation p.D2612G 0.13 possibly_damaging(0.753) TCGA-LN-A49O-01 1 208213028 208213028 C T PLXNA2 Missense_Mutation p.E1480K 0.35 deleterious(0.02) probably_damaging(0.983) TCGA-LN-A49O-01 1 20827583 20827583 T C MUL1 Missense_Mutation p.Y220C 0.17 deleterious(0) probably_damaging(0.959) TCGA-LN-A49O-01 1 226822143 226822143 T C ITPKB 3'UTR 0.37 TCGA-LN-A49O-01 1 247978881 247978881 G A OR14A16 Missense_Mutation p.H51Y 0.25 tolerated(0.48) benign(0.37) TCGA-LN-A49O-01 1 29030774 29030774 G A GMEB1 Silent p.Q277Q 0.52 TCGA-LN-A49O-01 1 40654740 40654740 A G RLF Missense_Mutation p.Y84C 0.31 deleterious(0) probably_damaging(0.996) TCGA-LN-A49O-01 1 44871073 44871075 GCC - RNF220 5'UTR 0.11 TCGA-LN-A49O-01 1 46826379 46826380 - T NSUN4 Frame_Shift_Ins p.V254Gfs*14 0.21 TCGA-LN-A49O-01 1 99157106 99157106 T G SNX7 Missense_Mutation p.F164V 0.21 deleterious(0.01) probably_damaging(0.964) TCGA-LN-A49O-01 20 43058230 43058230 G A HNF4A Silent p.P450P 0.41 TCGA-LN-A49O-01 20 47251277 47251277 T C PREX1 Missense_Mutation p.T1402A 0.14 tolerated(1) benign(0.003) TCGA-LN-A49O-01 20 50140465 50140466 - A NFATC2 Frame_Shift_Ins p.A106Gfs*66 0.24 TCGA-LN-A49O-01 20 62572378 62572378 G A UCKL1 Silent p.R347R 0.17 TCGA-LN-A49O-01 20 9520070 9520070 T C PAK7 3'UTR 0.31 TCGA-LN-A49O-01 22 18003287 18003287 G T CECR2 Missense_Mutation p.K325N 0.65 deleterious(0.01) possibly_damaging(0.853) TCGA-LN-A49O-01 22 39883900 39883900 G A MGAT3 Missense_Mutation p.G183D 0.23 tolerated(0.07) probably_damaging(0.927) TCGA-LN-A49O-01 2 170557861 170557862 - T PHOSPHO2 Frame_Shift_Ins p.N129* 0.25 TCGA-LN-A49O-01 2 242179062 242179062 A G HDLBP Silent p.C855C 0.53 TCGA-LN-A49O-01 2 64859071 64859071 A T SERTAD2 3'UTR 0.67 TCGA-LN-A49O-01 2 64859078 64859078 A G SERTAD2 3'UTR 0.66 TCGA-LN-A49O-01 3 108723734 108723734 C G MORC1 Missense_Mutation p.R672T 0.39 tolerated(0.47) benign(0) TCGA-LN-A49O-01 3 119101244 119101244 C G ARHGAP31 Silent p.L179L 0.40 TCGA-LN-A49O-01 3 121634493 121634493 A G SLC15A2 Missense_Mutation p.Y217C 0.34 deleterious(0) probably_damaging(0.999) TCGA-LN-A49O-01 3 160227638 160227638 C T KPNA4 Missense_Mutation p.E387K 0.18 deleterious(0) probably_damaging(1) TCGA-LN-A49O-01 3 164783108 164783108 G A SI Missense_Mutation p.R250C 0.29 deleterious(0) probably_damaging(0.929) TCGA-LN-A49O-01 3 179069778 179069778 G A MFN1 Missense_Mutation p.G68D 0.38 tolerated(0.28) benign(0.174) TCGA-LN-A49O-01 3 28373231 28373231 C T AZI2 Intron 0.22 TCGA-LN-A49O-01 3 38888583 38888583 C T SCN11A Missense_Mutation p.A1660T 0.80 deleterious(0) possibly_damaging(0.489) TCGA-LN-A49O-01 4 139103481 139103481 C A SLC7A11 Missense_Mutation p.K362N 0.60 deleterious(0.02) probably_damaging(0.924) TCGA-LN-A49O-01 4 17805701 17805701 T C DCAF16 Missense_Mutation p.I22V 0.55 tolerated_low_confidence(1) benign(0) TCGA-LN-A49O-01 5 125821384 125821384 C A GRAMD3 Nonsense_Mutation p.S341* 0.54 TCGA-LN-A49O-01 5 140482555 140482555 C T PCDHB3 Silent p.F774F 0.62 TCGA-LN-A49O-01 5 149449523 149449523 C T CSF1R Missense_Mutation p.E475K 0.22 tolerated(0.57) benign(0.014) TCGA-LN-A49O-01 5 55008260 55008260 C A SLC38A9 5'UTR 0.75 TCGA-LN-A49O-01 6 116747882 116747882 A T DSE Missense_Mutation p.M188L 0.18 tolerated(0.35) probably_damaging(0.909) TCGA-LN-A49O-01 6 132021790 132021790 T C OR2A4 Missense_Mutation p.Y251C 0.37 deleterious(0) probably_damaging(0.988) TCGA-LN-A49O-01 6 168479699 168479699 G A FRMD1 Nonsense_Mutation p.R26* 0.19 TCGA-LN-A49O-01 6 29637970 29637970 A G MOG Intron 0.39 TCGA-LN-A49O-01 6 30919708 30919708 A G DPCR1 Missense_Mutation p.H1156R 0.33 deleterious(0.03) benign(0.159) TCGA-LN-A49O-01 6 36927007 36927007 C T PI16 Silent p.G86G 0.53 TCGA-LN-A49O-01 6 76024322 76024322 T C FILIP1 Missense_Mutation p.K409R 0.17 tolerated(0.24) benign(0.027) TCGA-LN-A49O-01 7 142997478 142997478 A G CASP2 Intron 0.69 TCGA-LN-A49O-01 7 20768053 20768053 C T ABCB5 Nonsense_Mutation p.R948* 0.34 TCGA-LN-A49O-01 7 65617872 65617872 C T CRCP 3'UTR 0.31 TCGA-LN-A49O-01 7 71248560 71248560 G C CALN1 3'UTR 0.62 TCGA-LN-A49O-01 7 88963384 88963384 C A ZNF804B Missense_Mutation p.A363E 0.20 tolerated(0.23) benign(0.015) TCGA-LN-A49O-01 7 98548596 98548596 C A TRRAP Missense_Mutation p.P1804Q 0.28 possibly_damaging(0.897) TCGA-LN-A49O-01 8 102570742 102570742 A G GRHL2 Missense_Mutation p.N127S 0.23 tolerated(0.33) benign(0.012) TCGA-LN-A49O-01 8 110376813 110376813 A G PKHD1L1 Missense_Mutation p.I37M 0.25 tolerated(0.26) benign(0.051) TCGA-LN-A49O-01 8 143746717 143746717 T C JRK RNA 0.30 TCGA-LN-A49O-01 8 87060700 87060700 C T PSKH2 Silent p.A383A 0.30 TCGA-LN-A49O-01 9 138413998 138413998 A T LCN1 Missense_Mutation p.N66Y 0.72 deleterious(0) probably_damaging(0.997) TCGA-LN-A49O-01 9 140777395 140777395 C T CACNA1B Intron 0.11 TCGA-LN-A49O-01 X 118715461 118715461 T C UBE2A Intron 0.76 TCGA-LN-A49O-01 X 71359229 71359229 C G NHSL2 Missense_Mutation p.H611D 0.83 tolerated(0.67) benign(0.096) TCGA-LN-A49P-01 10 102308299 102308299 A G HIF1AN 3'UTR 0.33 TCGA-LN-A49P-01 10 112038963 112038963 G A MXI1 Missense_Mutation p.E155K 0.19 deleterious(0) probably_damaging(0.986) TCGA-LN-A49P-01 10 50535437 50535437 G C C10orf71 3'UTR 0.22 TCGA-LN-A49P-01 10 51590570 51590570 T A NCOA4 3'UTR 0.18 TCGA-LN-A49P-01 10 67680368 67680368 C T CTNNA3 Missense_Mutation p.S803N 0.15 deleterious(0) unknown(0) TCGA-LN-A49P-01 11 126306730 126306730 C T KIRREL3 Missense_Mutation p.E510K 0.37 tolerated(0.3) benign(0.008) TCGA-LN-A49P-01 11 1271669 1271669 C A MUC5B Missense_Mutation p.T4520N 0.29 unknown(0) TCGA-LN-A49P-01 11 61537890 61537912 CCCGATCCCCCACTACGCTGCCA ATGCCT MYRF Frame_Shift_Del p.P212Cfs*10 0.48 TCGA-LN-A49P-01 11 61537912 61537912 A T MYRF Missense_Mutation p.M219L 0.36 tolerated(0.87) benign(0.001) TCGA-LN-A49P-01 11 62300523 62300523 G A AHNAK Missense_Mutation p.P456S 0.70 benign(0.279) TCGA-LN-A49P-01 11 62622798 62622798 A G SLC3A2 5'Flank 0.23 TCGA-LN-A49P-01 11 68381752 68381752 A T PPP6R3 3'UTR 0.44 TCGA-LN-A49P-01 11 93463755 93463755 G C KIAA1731 3'Flank 0.22 TCGA-LN-A49P-01 12 100041871 100041871 C A FAM71C 5'UTR 0.24 TCGA-LN-A49P-01 12 11546795 11546795 G A PRB2 Missense_Mutation p.P73S 0.09 tolerated(0.13) unknown(0) TCGA-LN-A49P-01 12 120785277 120785277 C T MSI1 Silent p.A277A 0.13 TCGA-LN-A49P-01 12 129190651 129190651 G A TMEM132C Silent p.S1046S 0.27 TCGA-LN-A49P-01 12 5020720 5020720 C G KCNA1 Missense_Mutation p.P59R 0.24 deleterious(0) probably_damaging(1) TCGA-LN-A49P-01 12 57647828 57647828 T - R3HDM2 3'UTR 0.18 TCGA-LN-A49P-01 12 6062682 6062682 C T VWF Missense_Mutation p.G2656R 0.11 deleterious(0.03) probably_damaging(0.979) TCGA-LN-A49P-01 12 7086639 7086639 T C LPCAT3 Missense_Mutation p.I413V 0.26 tolerated(0.38) benign(0.006) TCGA-LN-A49P-01 12 81991809 81991809 C G PPFIA2 Intron 0.17 TCGA-LN-A49P-01 12 97306394 97306394 C T NEDD1 Intron 0.23 TCGA-LN-A49P-01 12 98931427 98931427 A G TMPO 3'Flank 0.25 TCGA-LN-A49P-01 13 64320963 64320963 T G AL445989.1 Missense_Mutation p.C10W 0.19 unknown(0) TCGA-LN-A49P-01 13 76397787 76397787 G A LMO7 Silent p.P676P 0.19 TCGA-LN-A49P-01 14 47342646 47342646 T C MDGA2 Silent p.G914G 0.17 TCGA-LN-A49P-01 14 56645145 56645145 G T PELI2 Missense_Mutation p.S57I 0.21 tolerated(0.2) probably_damaging(0.999) TCGA-LN-A49P-01 14 88399739 88399739 A G GALC 3'UTR 0.25 TCGA-LN-A49P-01 14 93676302 93676302 A T RP11-371E8.4 Nonsense_Mutation p.R114* 0.25 TCGA-LN-A49P-01 15 101189293 101189294 - T ASB7 3'UTR 0.15 TCGA-LN-A49P-01 15 75979614 75979614 C T CSPG4 Intron 0.46 TCGA-LN-A49P-01 15 90801306 90801306 C T TTLL13 Silent p.H324H 0.45 TCGA-LN-A49P-01 16 136635 136635 G A NPRL3 3'UTR 0.15 TCGA-LN-A49P-01 16 20548562 20548562 G A ACSM2B 3'UTR 0.30 TCGA-LN-A49P-01 16 29496887 29496887 G T RP11-231C14.4 Missense_Mutation p.P130T 0.44 benign(0.213) TCGA-LN-A49P-01 16 84494107 84494108 - G ATP2C2 Intron 0.26 TCGA-LN-A49P-01 17 3182035 3182035 G A OR3A2 Silent p.H65H 0.54 TCGA-LN-A49P-01 17 45235588 45235588 T C CDC27 Silent p.E153E 0.20 TCGA-LN-A49P-01 17 57889104 57889104 G A VMP1 Missense_Mutation p.G290D 0.16 deleterious(0) probably_damaging(0.997) TCGA-LN-A49P-01 17 61909557 61909570 CCCCATTCACCTTA - SMARCD2 3'UTR 0.24 TCGA-LN-A49P-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.47 TCGA-LN-A49P-01 19 10943499 10943517 GAGGTGTTCCCTGCCCGCT - TMED1 3'UTR 0.27 TCGA-LN-A49P-01 19 11663932 11663932 A C ELOF1 3'UTR 0.16 TCGA-LN-A49P-01 19 11891849 11891849 T G ZNF441 Missense_Mutation p.Y404D 0.23 tolerated(0.09) benign(0.101) TCGA-LN-A49P-01 19 12444333 12444333 G A ZNF563 5'UTR 0.25 TCGA-LN-A49P-01 19 17556067 17556067 C T CTD-2521M24.10 Missense_Mutation p.R101H 0.17 deleterious_low_confidence(0.04) probably_damaging(0.994) TCGA-LN-A49P-01 19 34304841 34304841 C T KCTD15 3'UTR 0.31 TCGA-LN-A49P-01 19 34719180 34719180 G A LSM14A 3'UTR 0.32 TCGA-LN-A49P-01 19 45656064 45656064 G A NKPD1 Missense_Mutation p.A544V 0.59 tolerated(0.58) possibly_damaging(0.763) TCGA-LN-A49P-01 19 51274591 51274591 G A GPR32 Missense_Mutation p.R245Q 0.24 tolerated(0.47) benign(0.105) TCGA-LN-A49P-01 19 7999973 7999973 C A TIMM44 Nonsense_Mutation p.E124* 0.20 TCGA-LN-A49P-01 1 110921577 110921577 G C SLC16A4 Missense_Mutation p.L310V 0.14 deleterious(0) possibly_damaging(0.507) TCGA-LN-A49P-01 1 152081839 152081839 C T TCHH Missense_Mutation p.R1285H 0.22 unknown(0) TCGA-LN-A49P-01 1 155583355 155583355 G C MSTO1 Missense_Mutation p.M462I 0.17 tolerated(0.45) benign(0) TCGA-LN-A49P-01 1 158064444 158064444 A G KIRREL Missense_Mutation p.N603S 0.20 deleterious(0) benign(0.26) TCGA-LN-A49P-01 1 16946163 16946163 C G RP5-1182A14.5 3'Flank 0.55 TCGA-LN-A49P-01 1 179815756 179815756 G A TOR1AIP2 Missense_Mutation p.S288F 0.19 deleterious(0) probably_damaging(0.998) TCGA-LN-A49P-01 1 214794199 214794199 T G CENPF Missense_Mutation p.L259V 0.25 benign(0.106) TCGA-LN-A49P-01 1 216678104 216678104 C G ESRRG 3'UTR 0.16 TCGA-LN-A49P-01 1 220440106 220440106 T C RAB3GAP2 Intron 0.24 TCGA-LN-A49P-01 1 220835772 220835772 A G MARK1 3'UTR 0.18 TCGA-LN-A49P-01 1 228111888 228111888 T C WNT9A Missense_Mutation p.K189R 0.24 tolerated(0.34) benign(0.119) TCGA-LN-A49P-01 1 229567224 229567224 G A ACTA1 3'UTR 0.19 TCGA-LN-A49P-01 1 55512211 55512211 C T PCSK9 Missense_Mutation p.H139Y 0.56 tolerated(0.05) benign(0.114) TCGA-LN-A49P-01 20 10287391 10287391 A G SNAP25 3'UTR 0.35 TCGA-LN-A49P-01 20 31022250 31022250 A T ASXL1 Missense_Mutation p.I579F 0.14 deleterious(0) probably_damaging(0.996) TCGA-LN-A49P-01 20 371973 371973 G A TRIB3 Missense_Mutation p.A112T 0.35 tolerated(0.43) benign(0.026) TCGA-LN-A49P-01 22 41565533 41565533 G T EP300 Missense_Mutation p.S1400I 0.34 probably_damaging(0.999) TCGA-LN-A49P-01 2 109381161 109381161 C T RANBP2 Missense_Mutation p.P1389L 0.09 deleterious(0.03) benign(0.135) TCGA-LN-A49P-01 2 114514063 114514063 G A SLC35F5 5'UTR 0.58 TCGA-LN-A49P-01 2 164466292 164466292 G A FIGN Missense_Mutation p.R684C 0.35 deleterious(0) probably_damaging(0.965) TCGA-LN-A49P-01 2 168115690 168115690 G C XIRP2 3'UTR 0.17 TCGA-LN-A49P-01 2 196729159 196729159 G C DNAH7 Missense_Mutation p.S2407C 0.25 deleterious(0) probably_damaging(0.918) TCGA-LN-A49P-01 2 201535448 201535448 G A AOX1 3'UTR 0.16 TCGA-LN-A49P-01 2 209198070 209198070 C T PIKFYVE Missense_Mutation p.S1332F 0.16 deleterious(0) probably_damaging(0.989) TCGA-LN-A49P-01 2 229890645 229890645 C T PID1 Silent p.G150G 0.13 TCGA-LN-A49P-01 2 242742979 242742979 T A GAL3ST2 Missense_Mutation p.F199I 0.12 deleterious(0.01) probably_damaging(0.943) TCGA-LN-A49P-01 2 27445849 27445849 C G CAD Missense_Mutation p.I251M 0.23 deleterious(0) probably_damaging(0.997) TCGA-LN-A49P-01 2 39996163 39996163 T A THUMPD2 Intron 0.11 TCGA-LN-A49P-01 2 44128499 44128499 T C LRPPRC Missense_Mutation p.M1177V 0.19 tolerated(0.06) possibly_damaging(0.77) TCGA-LN-A49P-01 2 55091009 55091009 A G EML6 Missense_Mutation p.I639V 0.12 tolerated(0.55) benign(0.006) TCGA-LN-A49P-01 3 123675052 123675052 T C CCDC14 Intron 0.27 TCGA-LN-A49P-01 3 129373823 129373823 G C TMCC1 Silent p.A545A 0.27 TCGA-LN-A49P-01 3 133478024 133478024 G A TF Missense_Mutation p.E352K 0.14 tolerated(0.42) benign(0.054) TCGA-LN-A49P-01 3 169711623 169711623 A C SEC62 3'UTR 0.15 TCGA-LN-A49P-01 3 179592166 179592166 G A PEX5L Silent p.S225S 0.15 TCGA-LN-A49P-01 3 183669325 183669325 C T ABCC5 Missense_Mutation p.E950K 0.17 tolerated(0.91) benign(0.002) TCGA-LN-A49P-01 3 30715678 30715678 G A TGFBR2 Missense_Mutation p.D471N 0.18 deleterious(0) probably_damaging(1) TCGA-LN-A49P-01 3 42707266 42707266 G A ZBTB47 3'UTR 0.25 TCGA-LN-A49P-01 3 88102780 88102780 C G CGGBP1 3'UTR 0.20 TCGA-LN-A49P-01 4 146056332 146056332 A G OTUD4 3'UTR 0.22 TCGA-LN-A49P-01 4 164415804 164415804 C T TMA16 5'UTR 0.26 TCGA-LN-A49P-01 4 75937793 75937793 G A PARM1 Missense_Mutation p.V68I 0.49 tolerated(0.13) benign(0.025) TCGA-LN-A49P-01 4 89859293 89859293 A G FAM13A Silent p.Y235Y 0.18 TCGA-LN-A49P-01 5 126205957 126205958 AT - MARCH3 3'UTR 0.37 TCGA-LN-A49P-01 5 133895550 133895550 C T JADE2 Silent p.A114A 0.14 TCGA-LN-A49P-01 5 148207798 148207798 A T ADRB2 3'UTR 0.18 TCGA-LN-A49P-01 5 149937504 149937504 G T NDST1 3'UTR 0.53 TCGA-LN-A49P-01 5 150029259 150029259 C T SYNPO Silent p.S718S 0.59 TCGA-LN-A49P-01 5 169507274 169507274 G A DOCK2 Missense_Mutation p.M1758I 0.10 tolerated_low_confidence(0.09) benign(0.079) TCGA-LN-A49P-01 5 53816170 53816171 - CTT SNX18 3'UTR 0.14 TCGA-LN-A49P-01 5 56180554 56180554 A - MAP3K1 Frame_Shift_Del p.I1295* 0.19 TCGA-LN-A49P-01 5 64926000 64926000 G A CTC-534A2.2 Missense_Mutation p.E196K 0.20 deleterious(0.04) probably_damaging(0.986) TCGA-LN-A49P-01 6 105606536 105606536 G A POPDC3 Missense_Mutation p.R229C 0.44 deleterious(0.03) probably_damaging(0.976) TCGA-LN-A49P-01 6 157469897 157469897 A T ARID1B Silent p.G897G 0.29 TCGA-LN-A49P-01 6 159692412 159692412 G A FNDC1 Missense_Mutation p.G1875R 0.49 tolerated(0.36) benign(0.299) TCGA-LN-A49P-01 6 71234985 71234985 G A FAM135A Missense_Mutation p.R733Q 0.19 tolerated(0.14) benign(0.01) TCGA-LN-A49P-01 7 126173838 126173838 G - GRM8 Frame_Shift_Del p.P533Lfs*32 0.14 TCGA-LN-A49P-01 7 137206686 137206686 C G DGKI Missense_Mutation p.R725T 0.17 tolerated(0.06) probably_damaging(0.996) TCGA-LN-A49P-01 7 21553939 21553939 A G SP4 3'UTR 0.40 TCGA-LN-A49P-01 7 47851429 47851429 G A PKD1L1 Missense_Mutation p.L2523F 0.15 deleterious(0.04) probably_damaging(0.963) TCGA-LN-A49P-01 7 86815159 86815162 ATGT - DMTF1 Frame_Shift_Del p.D355Efs*12 0.33 TCGA-LN-A49P-01 8 113267492 113267492 G A CSMD3 Missense_Mutation p.H3343Y 0.21 tolerated(0.08) benign(0.088) TCGA-LN-A49P-01 8 41393951 41393951 C T GINS4 Nonsense_Mutation p.Q57* 0.19 TCGA-LN-A49P-01 8 41754056 41754056 G A ANK1 5'UTR 0.09 TCGA-LN-A49P-01 8 49643126 49643126 G A EFCAB1 Nonsense_Mutation p.R98* 0.11 TCGA-LN-A49P-01 8 70964528 70964528 G A PRDM14 Silent p.A500A 0.24 TCGA-LN-A49P-01 8 90993677 90993677 T A NBN Missense_Mutation p.K82N 0.28 deleterious(0.03) benign(0.364) TCGA-LN-A49P-01 8 92307786 92307786 C T SLC26A7 Missense_Mutation p.S111L 0.13 tolerated(0.2) probably_damaging(0.999) TCGA-LN-A49P-01 9 128083774 128083774 C T GAPVD1 Silent p.L555L 0.23 TCGA-LN-A49P-01 9 139873468 139873468 G A PTGDS Silent p.A46A 0.18 TCGA-LN-A49P-01 9 35396854 35396854 G A UNC13B Missense_Mutation p.V1069M 0.19 deleterious(0) probably_damaging(0.953) TCGA-LN-A49P-01 X 101858368 101858368 T G ARMCX5 Nonsense_Mutation p.Y433* 0.63 TCGA-LN-A49P-01 X 102347947 102347947 G T NXF3 Nonsense_Mutation p.S2* 0.64 TCGA-LN-A49P-01 X 144905225 144905225 C A SLITRK2 Missense_Mutation p.L428I 0.12 deleterious(0) probably_damaging(0.999) TCGA-LN-A49P-01 X 148664813 148664813 G A MAGEA9B Missense_Mutation p.P8L 0.14 tolerated(0.19) benign(0.001) TCGA-LN-A49P-01 X 8763118 8763118 C A FAM9A Splice_Site p.X277_splice 0.42 TCGA-LN-A49R-01 10 105147814 105147814 A G TAF5 Missense_Mutation p.D746G 0.78 deleterious(0) benign(0.032) TCGA-LN-A49R-01 10 105792467 105792468 - CA COL17A1 Frame_Shift_Ins p.G1468Vfs*45 0.48 TCGA-LN-A49R-01 10 15145535 15145535 A T RPP38 Missense_Mutation p.K74N 0.18 tolerated(0.08) benign(0.006) TCGA-LN-A49R-01 10 24874807 24874807 T C ARHGAP21 Missense_Mutation p.I1471V 0.26 tolerated(0.31) benign(0.001) TCGA-LN-A49R-01 10 33196044 33196044 T C ITGB1 Intron 0.71 TCGA-LN-A49R-01 10 64575631 64575631 T G EGR2 Silent p.G53G 0.93 TCGA-LN-A49R-01 11 119149355 119149355 T A CBL Missense_Mutation p.Y455N 0.26 tolerated(0.3) benign(0.01) TCGA-LN-A49R-01 11 123909033 123909033 G A OR10G7 Missense_Mutation p.R226W 0.66 deleterious(0) probably_damaging(0.927) TCGA-LN-A49R-01 11 133794746 133794746 C A IGSF9B Missense_Mutation p.E696D 0.71 tolerated(0.26) probably_damaging(0.995) TCGA-LN-A49R-01 11 57322082 57322082 G T UBE2L6 Nonsense_Mutation p.Y46* 0.33 TCGA-LN-A49R-01 11 6007374 6007374 T C OR52L1 Missense_Mutation p.I263V 0.68 tolerated(1) benign(0.003) TCGA-LN-A49R-01 11 74546844 74546844 G A RNF169 Missense_Mutation p.G399D 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A49R-01 11 829507 829508 - G EFCAB4A Frame_Shift_Ins p.E143Gfs*147 0.17 TCGA-LN-A49R-01 11 93440055 93440055 A G KIAA1731 Missense_Mutation p.D1914G 0.09 tolerated(0.07) benign(0.228) TCGA-LN-A49R-01 12 102514034 102514034 A G PARPBP 5'UTR 0.33 TCGA-LN-A49R-01 12 107365611 107365611 A G C12orf23 3'UTR 0.67 TCGA-LN-A49R-01 12 116408453 116408453 T C MED13L Missense_Mutation p.I2005V 0.58 tolerated(1) possibly_damaging(0.651) TCGA-LN-A49R-01 12 117595684 117595684 T G FBXO21 Missense_Mutation p.H511P 0.28 deleterious(0) probably_damaging(1) TCGA-LN-A49R-01 12 15734634 15734634 C T PTPRO Missense_Mutation p.P1052S 0.19 tolerated(0.07) possibly_damaging(0.613) TCGA-LN-A49R-01 12 40618892 40618892 C A LRRK2 5'UTR 0.53 TCGA-LN-A49R-01 12 48579525 48579525 C T C12orf68 3'UTR 0.36 TCGA-LN-A49R-01 12 49431645 49431646 - C KMT2D Frame_Shift_Ins p.D3165Gfs*11 0.35 TCGA-LN-A49R-01 12 50398047 50398047 T C RACGAP1 Missense_Mutation p.I156V 0.34 deleterious(0.04) probably_damaging(0.994) TCGA-LN-A49R-01 12 51634217 51634218 - T DAZAP2 Frame_Shift_Ins p.T36Yfs*89 0.32 TCGA-LN-A49R-01 12 6427985 6427985 G A PLEKHG6 Silent p.K450K 0.35 TCGA-LN-A49R-01 12 67700046 67700046 A T CAND1 Silent p.S866S 0.48 TCGA-LN-A49R-01 12 88477689 88477689 T A CEP290 Missense_Mutation p.I1583F 0.29 benign(0.354) TCGA-LN-A49R-01 12 89742670 89742670 T C DUSP6 3'UTR 0.52 TCGA-LN-A49R-01 13 23912397 23912397 T C SACS Missense_Mutation p.Y1873C 0.71 probably_damaging(0.998) TCGA-LN-A49R-01 13 61103130 61103130 G A TDRD3 Missense_Mutation p.V591I 0.71 tolerated(0.29) benign(0.003) TCGA-LN-A49R-01 14 103195443 103195443 A G RCOR1 3'UTR 0.28 TCGA-LN-A49R-01 14 34394893 34394893 C T EGLN3 3'UTR 0.32 TCGA-LN-A49R-01 14 80669418 80669418 G T DIO2 Missense_Mutation p.L182M 0.52 tolerated(0.09) benign(0.249) TCGA-LN-A49R-01 15 24924081 24924081 A C NPAP1 Missense_Mutation p.S1023R 0.23 tolerated_low_confidence(0.14) benign(0.095) TCGA-LN-A49R-01 15 25219552 25219552 G A SNRPN 5'UTR 0.25 TCGA-LN-A49R-01 15 51250986 51250986 T C AP4E1 Silent p.L616L 0.09 TCGA-LN-A49R-01 15 62362130 62362130 T C C2CD4A 3'UTR 0.50 TCGA-LN-A49R-01 15 67923233 67923233 C G MAP2K5 Missense_Mutation p.H185D 0.49 deleterious(0) probably_damaging(0.993) TCGA-LN-A49R-01 16 136688 136688 C T NPRL3 3'UTR 0.62 TCGA-LN-A49R-01 16 1374899 1374900 - G UBE2I 3'UTR 0.26 TCGA-LN-A49R-01 16 20327307 20327307 A G GP2 Missense_Mutation p.V494A 0.13 tolerated(0.05) benign(0.212) TCGA-LN-A49R-01 16 2225837 2225837 C T TRAF7 Silent p.I543I 0.37 TCGA-LN-A49R-01 16 23497446 23497446 T C GGA2 Missense_Mutation p.K230E 0.35 deleterious(0.02) possibly_damaging(0.626) TCGA-LN-A49R-01 16 31373951 31373951 C G ITGAX Silent p.A412A 0.22 TCGA-LN-A49R-01 16 57468081 57468081 C T CIAPIN1 Missense_Mutation p.R144Q 0.32 tolerated(1) benign(0.001) TCGA-LN-A49R-01 16 58701331 58701331 G A SLC38A7 Silent p.G449G 0.19 TCGA-LN-A49R-01 16 67760012 67760012 G A RANBP10 3'UTR 0.39 TCGA-LN-A49R-01 16 68266687 68266688 - T ESRP2 Frame_Shift_Ins p.Q230Afs*12 0.58 TCGA-LN-A49R-01 16 74452168 74452168 G A CLEC18B Missense_Mutation p.A82V 0.14 deleterious(0) probably_damaging(0.96) TCGA-LN-A49R-01 17 27448072 27448072 T C MYO18A Missense_Mutation p.H510R 0.38 tolerated(0.13) benign(0.232) TCGA-LN-A49R-01 17 28656289 28656289 G A TMIGD1 Missense_Mutation p.S114L 0.26 deleterious(0) probably_damaging(0.922) TCGA-LN-A49R-01 17 29554303 29554303 C T NF1 Silent p.N773N 0.55 TCGA-LN-A49R-01 17 30374917 30374917 G T LRRC37B Missense_Mutation p.G794W 0.40 tolerated(0.19) probably_damaging(0.979) TCGA-LN-A49R-01 17 37237471 37237471 T C PLXDC1 Intron 0.36 TCGA-LN-A49R-01 17 7578370 7578370 C A TP53 Splice_Site p.X187_splice 0.93 TCGA-LN-A49R-01 18 14542753 14542753 C T POTEC Silent p.P131P 0.25 TCGA-LN-A49R-01 18 2688439 2688439 A G SMCHD1 Missense_Mutation p.N229S 0.49 deleterious(0.01) possibly_damaging(0.559) TCGA-LN-A49R-01 18 43310429 43310429 G A SLC14A1 Silent p.Q104Q 0.25 TCGA-LN-A49R-01 19 19223641 19223641 T C SLC25A42 3'UTR 0.44 TCGA-LN-A49R-01 19 24097771 24097771 G C ZNF726 5'UTR 0.37 TCGA-LN-A49R-01 19 2434295 2434295 C G LMNB2 Missense_Mutation p.E400D 0.44 deleterious(0.05) benign(0.05) TCGA-LN-A49R-01 19 33870773 33870774 - T CEBPG 3'UTR 0.48 TCGA-LN-A49R-01 19 49652529 49652529 G A PPFIA3 Missense_Mutation p.E1101K 0.26 deleterious(0) possibly_damaging(0.633) TCGA-LN-A49R-01 19 53207544 53207544 T C ZNF611 3'UTR 0.50 TCGA-LN-A49R-01 19 57839161 57839161 G A ZNF543 Missense_Mutation p.G111R 0.23 tolerated(0.49) benign(0.011) TCGA-LN-A49R-01 19 58131694 58131694 G T ZNF134 Missense_Mutation p.Q69H 0.38 deleterious(0.04) benign(0.018) TCGA-LN-A49R-01 19 58718140 58718140 C T ZNF274 Missense_Mutation p.P104S 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-LN-A49R-01 1 100547882 100547882 A G HIAT1 3'UTR 0.40 TCGA-LN-A49R-01 1 104116487 104116487 C A AMY2B Missense_Mutation p.A224E 0.57 tolerated(0.17) possibly_damaging(0.785) TCGA-LN-A49R-01 1 104117883 104117883 G A AMY2B Missense_Mutation p.R306K 0.26 tolerated(0.48) benign(0.002) TCGA-LN-A49R-01 1 107961248 107961248 G T NTNG1 Intron 0.44 TCGA-LN-A49R-01 1 119964528 119964528 A - HSD3B2 Frame_Shift_Del p.I136Sfs*38 0.25 TCGA-LN-A49R-01 1 1266824 1266824 G T TAS1R3 Silent p.G33G 0.30 TCGA-LN-A49R-01 1 151040227 151040227 A - MLLT11 3'UTR 0.27 TCGA-LN-A49R-01 1 151105028 151105028 G A SEMA6C Silent p.L941L 0.47 TCGA-LN-A49R-01 1 152080950 152080950 G T TCHH Missense_Mutation p.F1581L 0.48 unknown(0) TCGA-LN-A49R-01 1 173807358 173807358 T G DARS2 Missense_Mutation p.D267E 0.23 deleterious(0) probably_damaging(0.999) TCGA-LN-A49R-01 1 175372316 175372316 G A TNR Silent p.C312C 0.62 TCGA-LN-A49R-01 1 183506344 183506344 A G SMG7 Missense_Mutation p.I410V 0.25 tolerated(0.5) benign(0.009) TCGA-LN-A49R-01 1 186092111 186092111 G A HMCN1 Silent p.K4086K 0.54 TCGA-LN-A49R-01 1 205498558 205498558 G T CDK18 Splice_Site p.X423_splice 0.62 TCGA-LN-A49R-01 1 212241588 212241588 C T DTL Missense_Mutation p.R246C 0.27 deleterious(0) probably_damaging(1) TCGA-LN-A49R-01 1 214705746 214705746 A G PTPN14 Intron 0.48 TCGA-LN-A49R-01 1 62418003 62418003 A C INADL Intron 0.10 TCGA-LN-A49R-01 20 42697596 42697596 C A TOX2 3'UTR 0.51 TCGA-LN-A49R-01 20 62585290 62585290 G A AL118506.1 Missense_Mutation p.R95H 0.64 unknown(0) TCGA-LN-A49R-01 22 17072831 17072831 C T CCT8L2 Missense_Mutation p.G204R 0.38 tolerated(0.69) benign(0.077) TCGA-LN-A49R-01 22 19052582 19052582 T C DGCR2 Splice_Site p.X110_splice 0.50 TCGA-LN-A49R-01 22 40417725 40417726 - CTCGG FAM83F Frame_Shift_Ins p.H406Afs*8 0.33 TCGA-LN-A49R-01 2 110746139 110746139 A G LINC01123 RNA 0.44 TCGA-LN-A49R-01 2 122363745 122363745 C A CLASP1 5'UTR 0.50 TCGA-LN-A49R-01 2 12882618 12882618 A G TRIB2 3'UTR 0.49 TCGA-LN-A49R-01 2 128872722 128872722 C T UGGT1 Missense_Mutation p.L241F 0.53 deleterious(0) probably_damaging(0.999) TCGA-LN-A49R-01 2 138320891 138320891 G T THSD7B Missense_Mutation p.R1083L 0.35 tolerated(0.21) unknown(0) TCGA-LN-A49R-01 2 162036193 162036193 A T TANK Missense_Mutation p.E7V 0.47 deleterious(0) probably_damaging(0.912) TCGA-LN-A49R-01 2 178098945 178098945 G C NFE2L2 Missense_Mutation p.R34G 0.51 deleterious(0) probably_damaging(1) TCGA-LN-A49R-01 2 179407958 179407972 TCTCTGTGCCAGCTT - TTN In_Frame_Del p.K32243_E32247del 0.27 TCGA-LN-A49R-01 2 20448581 20448581 A T PUM2 3'UTR 0.29 TCGA-LN-A49R-01 2 21227283 21227283 G A APOB Missense_Mutation p.A3982V 0.43 benign(0.003) TCGA-LN-A49R-01 2 21234621 21234621 C T APOB Missense_Mutation p.E1707K 0.39 probably_damaging(0.985) TCGA-LN-A49R-01 2 233723189 233723189 C T GIGYF2 3'UTR 0.24 TCGA-LN-A49R-01 2 236649666 236649666 G T AGAP1 Missense_Mutation p.D124Y 0.43 deleterious(0) probably_damaging(1) TCGA-LN-A49R-01 2 25037312 25037312 A C CENPO Missense_Mutation p.E95A 0.51 deleterious(0.02) benign(0.059) TCGA-LN-A49R-01 2 48602929 48602929 A G FOXN2 3'UTR 0.59 TCGA-LN-A49R-01 2 60685126 60685126 T C BCL11A 3'UTR 0.75 TCGA-LN-A49R-01 2 70148870 70148870 C G MXD1 Nonsense_Mutation p.S59* 0.06 TCGA-LN-A49R-01 2 71896314 71896314 G T DYSF Missense_Mutation p.K1873N 0.23 tolerated(0.25) benign(0.091) TCGA-LN-A49R-01 2 85618819 85618820 - AGGC ELMOD3 3'UTR 0.45 TCGA-LN-A49R-01 2 97373133 97373133 T A LMAN2L Missense_Mutation p.T314S 0.35 tolerated(0.5) benign(0.002) TCGA-LN-A49R-01 3 122144649 122144649 A G KPNA1 3'UTR 0.59 TCGA-LN-A49R-01 3 125855621 125855621 G T ALDH1L1 Missense_Mutation p.P454T 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A49R-01 3 129547076 129547076 C T TMCC1 Missense_Mutation p.G49D 0.14 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LN-A49R-01 3 132169648 132169648 A G DNAJC13 Missense_Mutation p.Y165C 0.80 tolerated(0.22) benign(0) TCGA-LN-A49R-01 3 16312569 16312569 C T OXNAD1 Missense_Mutation p.T37I 0.77 deleterious(0.03) possibly_damaging(0.721) TCGA-LN-A49R-01 3 180337677 180337677 C T CCDC39 Missense_Mutation p.A694T 0.37 deleterious(0) probably_damaging(0.929) TCGA-LN-A49R-01 3 195509501 195509501 A T MUC4 Missense_Mutation p.S2984T 0.08 benign(0.044) TCGA-LN-A49R-01 3 21552422 21552422 T C ZNF385D Missense_Mutation p.K124E 0.31 tolerated(0.43) possibly_damaging(0.899) TCGA-LN-A49R-01 3 48420016 48420016 G A FBXW12 Missense_Mutation p.M205I 0.78 deleterious(0.03) benign(0.001) TCGA-LN-A49R-01 3 48615783 48615783 C A COL7A1 Missense_Mutation p.D1835Y 0.77 unknown(0) TCGA-LN-A49R-01 3 50222050 50222050 C A SEMA3F Missense_Mutation p.S420Y 0.91 tolerated(0.87) possibly_damaging(0.61) TCGA-LN-A49R-01 3 51434793 51434793 G A RBM15B 3'UTR 0.85 TCGA-LN-A49R-01 4 128584699 128584699 A G INTU Missense_Mutation p.Y311C 0.82 deleterious(0.03) benign(0.073) TCGA-LN-A49R-01 4 129858002 129858002 C A SCLT1 Missense_Mutation p.S546I 0.13 deleterious(0) probably_damaging(0.994) TCGA-LN-A49R-01 4 15691676 15691676 C T FAM200B 3'Flank 0.71 TCGA-LN-A49R-01 4 38798859 38798859 G C TLR1 Missense_Mutation p.L532V 0.77 deleterious(0) benign(0.232) TCGA-LN-A49R-01 4 48555255 48555255 T A FRYL Missense_Mutation p.Y1471F 0.71 tolerated(0.48) benign(0.006) TCGA-LN-A49R-01 4 65145912 65145912 T C TECRL Missense_Mutation p.I324V 0.54 tolerated(0.23) benign(0.02) TCGA-LN-A49R-01 4 74364929 74364929 C T AFM Missense_Mutation p.T463M 0.22 tolerated(0.13) possibly_damaging(0.593) TCGA-LN-A49R-01 4 75025854 75025855 - TA MTHFD2L Intron 0.14 TCGA-LN-A49R-01 4 79808450 79808450 A G BMP2K Intron 0.85 TCGA-LN-A49R-01 5 1238137 1238137 G C SLC6A18 Missense_Mutation p.G232R 0.65 deleterious(0) probably_damaging(0.941) TCGA-LN-A49R-01 5 133643980 133643980 G T CDKL3 Missense_Mutation p.P405T 0.53 tolerated(0.11) benign(0.15) TCGA-LN-A49R-01 5 137275979 137275979 T C FAM13B Missense_Mutation p.I895V 0.61 tolerated(0.37) benign(0.014) TCGA-LN-A49R-01 5 139917797 139917797 C G ANKHD1 Missense_Mutation p.S2452C 0.26 possibly_damaging(0.884) TCGA-LN-A49R-01 5 161325969 161325969 C T GABRA1 3'UTR 0.11 TCGA-LN-A49R-01 5 177565148 177565148 G T RMND5B Nonsense_Mutation p.E10* 0.52 TCGA-LN-A49R-01 5 59941316 59941316 T C DEPDC1B Intron 0.11 TCGA-LN-A49R-01 5 75428155 75428155 G A SV2C Missense_Mutation p.G194S 0.80 tolerated(0.15) probably_damaging(0.92) TCGA-LN-A49R-01 5 79025179 79025179 C A CMYA5 Silent p.T197T 0.35 TCGA-LN-A49R-01 6 111694879 111694879 T C REV3L Missense_Mutation p.N1560S 0.10 tolerated(1) benign(0.001) TCGA-LN-A49R-01 6 12125356 12125356 C T HIVEP1 Silent p.D1776D 0.30 TCGA-LN-A49R-01 6 128718824 128718824 G T PTPRK Missense_Mutation p.T37N 0.20 tolerated(0.17) benign(0.385) TCGA-LN-A49R-01 6 149900994 149900994 A G GINM1 Missense_Mutation p.I152V 0.94 tolerated(0.41) benign(0.021) TCGA-LN-A49R-01 6 170892195 170892195 A G PDCD2 Missense_Mutation p.M203T 0.85 tolerated(0.64) benign(0) TCGA-LN-A49R-01 6 24534212 24534212 C A ALDH5A1 3'UTR 0.31 TCGA-LN-A49R-01 6 29394522 29394522 A G OR11A1 Silent p.H299H 0.55 TCGA-LN-A49R-01 6 35810356 35810356 T C SRPK1 Missense_Mutation p.Y549C 0.27 deleterious(0) probably_damaging(1) TCGA-LN-A49R-01 6 52960336 52960336 A G FBXO9 Missense_Mutation p.Y370C 0.55 tolerated(0.13) possibly_damaging(0.664) TCGA-LN-A49R-01 6 79698018 79698018 G T PHIP Missense_Mutation p.Q790K 0.48 tolerated(0.23) benign(0.011) TCGA-LN-A49R-01 7 102741976 102741976 A G NAPEPLD 3'UTR 0.32 TCGA-LN-A49R-01 7 126409920 126409920 A T GRM8 Missense_Mutation p.N452K 0.24 tolerated(0.37) benign(0.028) TCGA-LN-A49R-01 7 141478419 141478419 C G TAS2R4 Missense_Mutation p.S44C 0.12 tolerated(0.09) benign(0.315) TCGA-LN-A49R-01 7 155559292 155559292 C G RBM33 Silent p.S1106S 0.25 TCGA-LN-A49R-01 7 25191224 25191224 T C C7orf31 Silent p.V225V 0.56 TCGA-LN-A49R-01 7 38295976 38295976 G C TRGJP2 Missense_Mutation p.T8R 0.39 unknown(0) TCGA-LN-A49R-01 7 38423492 38423492 G T AMPH 3'UTR 0.39 TCGA-LN-A49R-01 7 44156828 44156828 A T POLD2 Missense_Mutation p.F162Y 0.08 tolerated(1) benign(0) TCGA-LN-A49R-01 7 5104863 5104863 G C RBAK Missense_Mutation p.E592D 0.33 deleterious(0) probably_damaging(0.986) TCGA-LN-A49R-01 7 51096150 51096150 G C COBL Silent p.V881V 0.51 TCGA-LN-A49R-01 7 53104434 53104434 C G POM121L12 3'UTR 0.32 TCGA-LN-A49R-01 7 99091249 99091249 C G ZNF394 Missense_Mutation p.C530S 0.52 deleterious(0) probably_damaging(0.986) TCGA-LN-A49R-01 7 99767517 99767517 C A GPC2 3'UTR 0.45 TCGA-LN-A49R-01 8 110305659 110305659 A G NUDCD1 Missense_Mutation p.L185P 0.12 deleterious(0) probably_damaging(0.993) TCGA-LN-A49R-01 8 113678609 113678609 C A CSMD3 Missense_Mutation p.V905L 0.34 tolerated(0.06) benign(0.075) TCGA-LN-A49R-01 8 125498283 125498283 C T RNF139 Silent p.I131I 0.12 TCGA-LN-A49R-01 8 133806767 133806767 G - PHF20L1 Frame_Shift_Del p.L65Ffs*9 0.38 TCGA-LN-A49R-01 8 27727905 27727905 T C SCARA5 3'UTR 0.50 TCGA-LN-A49R-01 9 135945858 135945858 A G CEL Missense_Mutation p.T436A 0.45 deleterious(0) possibly_damaging(0.836) TCGA-LN-A49R-01 9 140346852 140346852 C G NSMF Missense_Mutation p.G401R 0.36 deleterious(0) probably_damaging(1) TCGA-LN-A49R-01 9 17796622 17796622 G C SH3GL2 3'UTR 0.77 TCGA-LN-A49R-01 9 21971111 21971111 G A CDKN2A Missense_Mutation p.H83Y 0.91 deleterious(0) probably_damaging(0.999) TCGA-LN-A49R-01 9 88650485 88650485 C T GOLM1 Silent p.P271P 0.88 TCGA-LN-A49R-01 9 98242324 98242324 T A PTCH1 Nonsense_Mutation p.R332* 0.81 TCGA-LN-A49R-01 X 118717661 118717661 T C UBE2A 3'UTR 0.84 TCGA-LN-A49R-01 X 141291732 141291732 G A MAGEC2 Silent p.N14N 0.79 TCGA-LN-A49R-01 X 144906924 144906924 C G SLITRK2 3'UTR 0.85 TCGA-LN-A49R-01 X 18189223 18189223 G A BEND2 Nonsense_Mutation p.Q695* 0.82 TCGA-LN-A49R-01 X 32472792 32472792 A T DMD Missense_Mutation p.V1197D 0.21 probably_damaging(0.986) TCGA-LN-A49R-01 X 48819093 48819093 G A KCND1 3'UTR 0.59 TCGA-LN-A49S-01 10 127708387 127708387 C T ADAM12 Missense_Mutation p.C849Y 0.09 tolerated(1) benign(0) TCGA-LN-A49S-01 10 133769299 133769299 C G PPP2R2D Silent p.L367L 0.08 TCGA-LN-A49S-01 10 13749049 13749049 T A FRMD4A Missense_Mutation p.H275L 0.21 deleterious(0.03) benign(0.006) TCGA-LN-A49S-01 10 2056458 2056458 T A LINC00700 RNA 0.09 TCGA-LN-A49S-01 10 27066072 27066072 C T ABI1 Silent p.A128A 0.22 TCGA-LN-A49S-01 10 46272800 46272800 C G FAM21C Missense_Mutation p.S741C 0.17 tolerated(0.05) benign(0.226) TCGA-LN-A49S-01 10 60129134 60129134 T C UBE2D1 3'UTR 0.08 TCGA-LN-A49S-01 10 75564538 75564538 C T NDST2 Silent p.Q612Q 0.08 TCGA-LN-A49S-01 10 8006229 8006229 T A TAF3 Silent p.V252V 0.15 TCGA-LN-A49S-01 10 90565733 90565733 G C LIPM Intron 0.06 TCGA-LN-A49S-01 10 90701066 90701066 C T ACTA2 Missense_Mutation p.R179H 0.17 tolerated_low_confidence(0.06) benign(0.063) TCGA-LN-A49S-01 10 91162762 91162762 C G IFIT1 Missense_Mutation p.L244V 0.13 deleterious(0) possibly_damaging(0.87) TCGA-LN-A49S-01 10 93221933 93221933 C G HECTD2 Missense_Mutation p.L198V 0.12 tolerated(0.3) benign(0.119) TCGA-LN-A49S-01 10 99371273 99371273 C T HOGA1 Missense_Mutation p.R281W 0.19 deleterious(0) benign(0.005) TCGA-LN-A49S-01 11 102496048 102496048 C T MMP20 Translation_Start_Site p.M1? 0.17 deleterious(0.01) possibly_damaging(0.643) TCGA-LN-A49S-01 11 102496056 102496056 C T MMP20 5'UTR 0.17 TCGA-LN-A49S-01 11 114027093 114027093 G A ZBTB16 Missense_Mutation p.E435K 0.06 deleterious(0) probably_damaging(0.976) TCGA-LN-A49S-01 11 124012384 124012384 G A VWA5A Silent p.K653K 0.05 TCGA-LN-A49S-01 11 18305401 18305401 C G HPS5 Missense_Mutation p.R1000T 0.09 tolerated(0.65) benign(0.008) TCGA-LN-A49S-01 11 18499176 18499176 G C LDHAL6A Missense_Mutation p.E240D 0.08 tolerated(0.05) benign(0.006) TCGA-LN-A49S-01 11 33047376 33047376 A G DEPDC7 Missense_Mutation p.N82S 0.17 tolerated(0.41) benign(0.206) TCGA-LN-A49S-01 11 49597796 49597796 A T RP11-707M1.1 RNA 0.17 TCGA-LN-A49S-01 11 57373936 57373936 C T SERPING1 Silent p.F315F 0.17 TCGA-LN-A49S-01 11 57471455 57471455 C A MED19 3'UTR 0.05 TCGA-LN-A49S-01 11 57583408 57583408 C G CTNND1 Missense_Mutation p.L944V 0.07 tolerated_low_confidence(0.36) benign(0.026) TCGA-LN-A49S-01 11 61556621 61556621 T C TMEM258 3'UTR 0.17 TCGA-LN-A49S-01 11 62290215 62290215 C T AHNAK Missense_Mutation p.D3892N 0.06 probably_damaging(0.998) TCGA-LN-A49S-01 11 65341543 65341543 G C FAM89B 3'UTR 0.14 TCGA-LN-A49S-01 11 77727683 77727683 C T KCTD14 Missense_Mutation p.E242K 0.24 tolerated(1) benign(0) TCGA-LN-A49S-01 11 92532190 92532190 T C FAT3 Missense_Mutation p.V2004A 0.43 possibly_damaging(0.73) TCGA-LN-A49S-01 11 95504208 95504208 C T FAM76B 3'UTR 0.20 TCGA-LN-A49S-01 12 122677396 122677396 C T LRRC43 Silent p.V398V 0.09 TCGA-LN-A49S-01 12 14927628 14927628 A G H2AFJ Missense_Mutation p.K75R 0.08 deleterious_low_confidence(0.03) benign(0.049) TCGA-LN-A49S-01 12 21670807 21670807 A G GOLT1B 3'UTR 0.08 TCGA-LN-A49S-01 12 48380220 48380220 C T COL2A1 Missense_Mutation p.A476T 0.15 possibly_damaging(0.828) TCGA-LN-A49S-01 12 49444573 49444573 T - KMT2D Frame_Shift_Del p.D933Vfs*25 0.20 TCGA-LN-A49S-01 12 51636556 51636556 A T DAZAP2 3'UTR 0.11 TCGA-LN-A49S-01 12 55886520 55886520 G A OR6C68 Missense_Mutation p.R120H 0.19 deleterious_low_confidence(0.02) benign(0.368) TCGA-LN-A49S-01 12 56536626 56536626 G A ESYT1 Missense_Mutation p.E976K 0.19 tolerated(0.68) benign(0.096) TCGA-LN-A49S-01 12 6970267 6970267 A G USP5 Missense_Mutation p.K499E 0.15 deleterious(0.04) possibly_damaging(0.808) TCGA-LN-A49S-01 12 77440035 77440035 C G E2F7 Missense_Mutation p.K204N 0.08 deleterious(0) probably_damaging(1) TCGA-LN-A49S-01 12 88474063 88474063 G A CEP290 Missense_Mutation p.L1708F 0.10 possibly_damaging(0.603) TCGA-LN-A49S-01 13 113765088 113765088 C G F7 Missense_Mutation p.S72C 0.21 deleterious(0) probably_damaging(0.989) TCGA-LN-A49S-01 13 29600389 29600389 G T MTUS2 Missense_Mutation p.K528N 0.16 deleterious(0.03) benign(0.361) TCGA-LN-A49S-01 13 49783626 49783626 A T FNDC3A 3'UTR 0.50 TCGA-LN-A49S-01 13 52333896 52333896 C T WDFY2 Silent p.V398V 0.13 TCGA-LN-A49S-01 13 53216549 53216549 C G HNRNPA1L2 5'UTR 0.15 TCGA-LN-A49S-01 14 102732205 102732205 C T MOK Missense_Mutation p.R56H 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-LN-A49S-01 14 103852338 103852338 C T MARK3 5'UTR 0.11 TCGA-LN-A49S-01 14 104001404 104001404 A G TRMT61A 3'UTR 0.10 TCGA-LN-A49S-01 14 106351909 106351909 C T IGHD3-22 Silent p.%3D 0.06 TCGA-LN-A49S-01 14 23245096 23245096 G C SLC7A7 Nonsense_Mutation p.S315* 0.18 TCGA-LN-A49S-01 14 65210415 65210415 C T PLEKHG3 Silent p.V1162V 0.21 TCGA-LN-A49S-01 14 79434617 79434617 T C NRXN3 Silent p.L651L 0.14 TCGA-LN-A49S-01 14 81744226 81744226 C A STON2 Nonsense_Mutation p.E477* 0.09 TCGA-LN-A49S-01 14 81744227 81744227 C A STON2 Silent p.L476L 0.07 TCGA-LN-A49S-01 15 25434591 25434591 G A SNORD115-11 RNA 0.06 TCGA-LN-A49S-01 15 30012102 30012102 G - TJP1 Frame_Shift_Del p.P961Qfs*14 0.25 TCGA-LN-A49S-01 15 31664511 31664511 C A KLF13 3'UTR 0.19 TCGA-LN-A49S-01 15 33022942 33022942 C G GREM1 Silent p.T17T 0.19 TCGA-LN-A49S-01 15 37391777 37391777 G C MEIS2 5'UTR 0.25 TCGA-LN-A49S-01 15 40295507 40295507 G A EIF2AK4 Missense_Mutation p.D1117N 0.04 deleterious(0.03) possibly_damaging(0.833) TCGA-LN-A49S-01 15 40703768 40703768 C T IVD Silent p.L192L 0.14 TCGA-LN-A49S-01 15 42470518 42470518 C A VPS39 Silent p.V286V 0.35 TCGA-LN-A49S-01 15 43825732 43825732 C G PPIP5K1 3'UTR 0.21 TCGA-LN-A49S-01 15 49085560 49085560 G A CEP152 Missense_Mutation p.R264C 0.12 deleterious(0.03) benign(0.053) TCGA-LN-A49S-01 15 52258503 52258503 T C LEO1 Missense_Mutation p.N86S 0.24 deleterious_low_confidence(0.01) benign(0.26) TCGA-LN-A49S-01 15 64966881 64966881 G C ZNF609 Missense_Mutation p.D610H 0.18 deleterious(0.05) possibly_damaging(0.531) TCGA-LN-A49S-01 15 78882187 78882187 A T CHRNA5 Missense_Mutation p.I152F 0.14 deleterious(0) possibly_damaging(0.533) TCGA-LN-A49S-01 16 11540490 11540490 G A CTD-3088G3.8 Silent p.V1549V 0.05 TCGA-LN-A49S-01 16 17202585 17202585 C T XYLT1 Silent p.L949L 0.17 TCGA-LN-A49S-01 16 20335452 20335452 C T GP2 Missense_Mutation p.R74Q 0.45 deleterious(0) probably_damaging(1) TCGA-LN-A49S-01 16 3607659 3607659 G A NLRC3 Silent p.I725I 0.15 TCGA-LN-A49S-01 16 4493076 4493076 G A DNAJA3 Missense_Mutation p.R281H 0.08 tolerated(0.13) benign(0.187) TCGA-LN-A49S-01 16 56977366 56977366 G A HERPUD1 3'UTR 0.11 TCGA-LN-A49S-01 16 57546752 57546752 G A CCDC102A Silent p.L518L 0.12 TCGA-LN-A49S-01 16 58287930 58287930 G A CCDC113 Missense_Mutation p.R86Q 0.10 deleterious(0.03) benign(0.337) TCGA-LN-A49S-01 16 66887278 66887278 G C CA7 Splice_Site p.X225_splice 0.09 TCGA-LN-A49S-01 16 67265981 67265981 G C FHOD1 Silent p.L721L 0.04 TCGA-LN-A49S-01 16 67914539 67914539 G A EDC4 Missense_Mutation p.R726H 0.25 deleterious(0) probably_damaging(0.98) TCGA-LN-A49S-01 16 71316845 71316845 T C CMTR2 3'UTR 0.17 TCGA-LN-A49S-01 16 75271130 75271130 T C BCAR1 Missense_Mutation p.Y295C 0.16 deleterious(0) probably_damaging(0.995) TCGA-LN-A49S-01 16 89785705 89785705 C G VPS9D1 Intron 0.09 TCGA-LN-A49S-01 17 18110203 18110203 A T ALKBH5 Missense_Mutation p.D309V 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.773) TCGA-LN-A49S-01 17 1840731 1840731 C T RTN4RL1 Missense_Mutation p.A129T 0.11 tolerated(0.81) probably_damaging(1) TCGA-LN-A49S-01 17 38445741 38445741 G C CDC6 Missense_Mutation p.L23F 0.10 tolerated(0.68) benign(0.193) TCGA-LN-A49S-01 17 41180632 41180632 C T RND2 Missense_Mutation p.R207W 0.06 deleterious(0) possibly_damaging(0.852) TCGA-LN-A49S-01 17 56438273 56438273 G A RNF43 Silent p.I240I 0.16 TCGA-LN-A49S-01 17 57776307 57776307 G A PTRH2 5'UTR 0.12 TCGA-LN-A49S-01 17 73015819 73015819 G A ICT1 Missense_Mutation p.R83Q 0.11 deleterious(0.01) probably_damaging(0.943) TCGA-LN-A49S-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.46 TCGA-LN-A49S-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.15 deleterious(0) probably_damaging(1) TCGA-LN-A49S-01 17 80790319 80790320 - AA ZNF750 Frame_Shift_Ins p.K5Sfs*41 0.23 TCGA-LN-A49S-01 18 51025708 51025708 G C DCC Silent p.L1313L 0.22 TCGA-LN-A49S-01 18 8378361 8378361 G A PTPRM Missense_Mutation p.M1187I 0.07 tolerated(0.4) benign(0.023) TCGA-LN-A49S-01 18 9887037 9887037 C T TXNDC2 Silent p.I187I 0.07 TCGA-LN-A49S-01 19 17316815 17316815 G A MYO9B Missense_Mutation p.S1704N 0.07 tolerated(0.32) benign(0.071) TCGA-LN-A49S-01 19 36270045 36270045 C T ARHGAP33 Intron 0.29 TCGA-LN-A49S-01 19 54177477 54177477 G A MIR498 RNA 0.38 TCGA-LN-A49S-01 19 54669176 54669176 G A TMC4 Missense_Mutation p.R314C 0.11 deleterious(0.02) possibly_damaging(0.874) TCGA-LN-A49S-01 19 55142048 55142048 C G LILRB1 5'UTR 0.06 TCGA-LN-A49S-01 19 55855145 55855145 A T SUV420H2 Missense_Mutation p.I162F 0.14 deleterious(0) possibly_damaging(0.805) TCGA-LN-A49S-01 19 5694527 5694527 C T LONP1 Missense_Mutation p.E731K 0.41 tolerated(0.12) benign(0.014) TCGA-LN-A49S-01 19 58565137 58565137 C T ZSCAN1 Silent p.R315R 0.21 TCGA-LN-A49S-01 19 58983245 58983245 C A ZNF324 Missense_Mutation p.F462L 0.11 deleterious(0) probably_damaging(0.999) TCGA-LN-A49S-01 19 6375764 6375764 C T PSPN Missense_Mutation p.D33N 0.11 tolerated(0.16) benign(0.002) TCGA-LN-A49S-01 19 6833625 6833625 G A VAV1 Missense_Mutation p.R566Q 0.34 deleterious(0.04) possibly_damaging(0.783) TCGA-LN-A49S-01 1 100361905 100361905 G C AGL Missense_Mutation p.R1108T 0.06 deleterious(0.01) probably_damaging(0.98) TCGA-LN-A49S-01 1 104093612 104093612 A C RNPC3 Missense_Mutation p.I471L 0.22 tolerated(0.11) benign(0.407) TCGA-LN-A49S-01 1 110590208 110590208 A T STRIP1 Missense_Mutation p.Q511H 0.20 tolerated(0.05) benign(0.005) TCGA-LN-A49S-01 1 110943975 110943975 T G LAMTOR5 3'UTR 0.21 TCGA-LN-A49S-01 1 147091780 147091780 C G BCL9 Missense_Mutation p.P607A 0.06 tolerated(0.41) probably_damaging(0.98) TCGA-LN-A49S-01 1 151396497 151396497 A G POGZ Missense_Mutation p.L484P 0.24 tolerated(0.11) benign(0.17) TCGA-LN-A49S-01 1 153580638 153580638 C T S100A16 5'UTR 0.11 TCGA-LN-A49S-01 1 154975307 154975307 C T ZBTB7B 5'UTR 0.15 TCGA-LN-A49S-01 1 155184051 155184051 G A MTX1 3'Flank 0.17 TCGA-LN-A49S-01 1 155582929 155582929 A G MSTO1 Silent p.P396P 0.19 TCGA-LN-A49S-01 1 161487943 161487943 T C FCGR2A 3'UTR 0.11 TCGA-LN-A49S-01 1 169947249 169947249 C G KIFAP3 Missense_Mutation p.R625T 0.12 deleterious(0) probably_damaging(0.995) TCGA-LN-A49S-01 1 171557645 171557645 G C PRRC2C Splice_Site p.X2731_splice 0.05 TCGA-LN-A49S-01 1 17747270 17747270 T C RCC2 Missense_Mutation p.M267V 0.11 tolerated(0.31) benign(0.145) TCGA-LN-A49S-01 1 182357713 182357713 C T GLUL Missense_Mutation p.V54M 0.14 deleterious(0.04) possibly_damaging(0.502) TCGA-LN-A49S-01 1 193220740 193220740 C G CDC73 3'UTR 0.06 TCGA-LN-A49S-01 1 198222262 198222262 A T NEK7 Missense_Mutation p.R50S 0.29 deleterious(0.03) benign(0.292) TCGA-LN-A49S-01 1 201042678 201042678 T C CACNA1S Missense_Mutation p.K719R 0.20 tolerated(0.1) benign(0.109) TCGA-LN-A49S-01 1 205068124 205068124 C A RBBP5 Missense_Mutation p.E363D 0.21 tolerated(0.22) benign(0.018) TCGA-LN-A49S-01 1 208391109 208391109 C T PLXNA2 Silent p.L53L 0.11 TCGA-LN-A49S-01 1 218480940 218480940 C T RRP15 Missense_Mutation p.T224I 0.44 deleterious(0.05) benign(0.122) TCGA-LN-A49S-01 1 218509816 218509816 G A RRP15 3'UTR 0.07 TCGA-LN-A49S-01 1 24999012 24999013 - A SRRM1 3'UTR 0.21 TCGA-LN-A49S-01 1 25689023 25689023 A G RHCE Missense_Mutation p.F417L 0.12 deleterious(0) possibly_damaging(0.841) TCGA-LN-A49S-01 1 26104684 26104684 G T MAN1C1 Missense_Mutation p.G449V 0.41 deleterious(0) probably_damaging(0.98) TCGA-LN-A49S-01 1 31467963 31467963 C G PUM1 Silent p.V275V 0.07 TCGA-LN-A49S-01 1 34164367 34164367 A G CSMD2 Missense_Mutation p.L1264P 0.26 deleterious(0.04) probably_damaging(0.997) TCGA-LN-A49S-01 1 35886028 35886028 T A ZMYM4 3'UTR 0.42 TCGA-LN-A49S-01 1 41088461 41088461 G A RIMS3 3'UTR 0.11 TCGA-LN-A49S-01 1 43102995 43102995 G C CCDC30 Missense_Mutation p.K528N 0.05 tolerated(0.18) benign(0.275) TCGA-LN-A49S-01 1 52246895 52246895 C T OSBPL9 Missense_Mutation p.S449L 0.06 deleterious(0) possibly_damaging(0.823) TCGA-LN-A49S-01 20 1630038 1630038 C T SIRPG Silent p.E30E 0.07 TCGA-LN-A49S-01 20 2846872 2846872 C T VPS16 Silent p.I762I 0.11 TCGA-LN-A49S-01 20 35533879 35533879 G C SAMHD1 Missense_Mutation p.S433C 0.07 deleterious(0) probably_damaging(0.987) TCGA-LN-A49S-01 20 49576374 49576374 C T MOCS3 Missense_Mutation p.P332L 0.26 tolerated(0.1) benign(0.001) TCGA-LN-A49S-01 21 45668946 45668946 C T DNMT3L Missense_Mutation p.A320T 0.08 deleterious(0.01) benign(0.38) TCGA-LN-A49S-01 22 20049072 20049072 C T TANGO2 Silent p.N157N 0.14 TCGA-LN-A49S-01 22 21119944 21119944 G A PI4KA Missense_Mutation p.P789L 0.12 deleterious(0.05) benign(0.321) TCGA-LN-A49S-01 22 24122846 24122846 G A MMP11 Missense_Mutation p.R187Q 0.14 deleterious(0.05) probably_damaging(0.977) TCGA-LN-A49S-01 2 141215110 141215110 C T LRP1B Missense_Mutation p.A3246T 0.10 possibly_damaging(0.483) TCGA-LN-A49S-01 2 166846278 166846278 C T SCN1A 3'UTR 0.10 TCGA-LN-A49S-01 2 176958115 176958115 A G HOXD13 Missense_Mutation p.K166R 0.08 deleterious(0.01) probably_damaging(0.994) TCGA-LN-A49S-01 2 179474483 179474483 G A TTN Nonsense_Mutation p.R17223* 0.14 TCGA-LN-A49S-01 2 189917478 189917478 C T COL5A2 Silent p.P904P 0.31 TCGA-LN-A49S-01 2 234602073 234602073 G C UGT1A6 Missense_Mutation p.E141D 0.25 tolerated(0.31) benign(0.015) TCGA-LN-A49S-01 2 241631539 241631539 G A AQP12A Missense_Mutation p.D58N 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A49S-01 2 31010080 31010080 C T CAPN13 Missense_Mutation p.E38K 0.19 tolerated(0.05) benign(0.133) TCGA-LN-A49S-01 2 37468805 37468805 C T NDUFAF7 Nonsense_Mutation p.Q165* 0.12 TCGA-LN-A49S-01 2 69053487 69053487 G A ARHGAP25 3'UTR 0.21 TCGA-LN-A49S-01 2 74683272 74683272 C G INO80B Nonsense_Mutation p.S138* 0.06 TCGA-LN-A49S-01 2 84518145 84518145 A C FUNDC2P2 RNA 0.14 TCGA-LN-A49S-01 2 89247092 89247092 C T IGKV1-5 Missense_Mutation p.M26I 0.04 deleterious(0.02) benign(0.176) TCGA-LN-A49S-01 2 97530540 97530540 C T SEMA4C Silent p.P288P 0.15 TCGA-LN-A49S-01 2 99342758 99342758 G A MGAT4A Missense_Mutation p.A13V 0.20 tolerated(0.99) benign(0.001) TCGA-LN-A49S-01 3 122255181 122255181 C T PARP9 Silent p.K673K 0.08 TCGA-LN-A49S-01 3 129813257 129813257 C G AC083906.2 5'Flank 0.05 TCGA-LN-A49S-01 3 132277827 132277827 T C ACAD11 Silent p.T777T 0.16 TCGA-LN-A49S-01 3 184075806 184075806 C G CLCN2 Missense_Mutation p.A187P 0.50 deleterious(0) probably_damaging(1) TCGA-LN-A49S-01 3 185766209 185766209 G C ETV5 3'UTR 0.11 TCGA-LN-A49S-01 3 195510076 195510076 G A MUC4 Missense_Mutation p.S2792L 0.03 benign(0.044) TCGA-LN-A49S-01 3 196044938 196044938 T C TCTEX1D2 Missense_Mutation p.Y29C 0.15 deleterious(0) probably_damaging(0.95) TCGA-LN-A49S-01 3 23942371 23942371 C T NKIRAS1 Silent p.V88V 0.11 TCGA-LN-A49S-01 3 36900302 36900302 G C TRANK1 Missense_Mutation p.L483V 0.14 deleterious(0.01) benign(0.201) TCGA-LN-A49S-01 3 47387032 47387032 C G KLHL18 3'UTR 0.16 TCGA-LN-A49S-01 4 114823722 114823722 T C ARSJ Missense_Mutation p.Y503C 0.08 tolerated(0.16) benign(0.306) TCGA-LN-A49S-01 4 155226327 155226327 C G DCHS2 Missense_Mutation p.E1318Q 0.15 tolerated(0.43) benign(0.02) TCGA-LN-A49S-01 4 155298454 155298454 C T DCHS2 Missense_Mutation p.R126K 0.11 tolerated(0.08) probably_damaging(0.992) TCGA-LN-A49S-01 4 164247644 164247644 C T NPY1R Silent p.K21K 0.17 TCGA-LN-A49S-01 4 188924012 188924012 G T ZFP42 Silent p.L17L 0.24 TCGA-LN-A49S-01 4 44176944 44176944 T C KCTD8 Missense_Mutation p.K429E 0.06 tolerated(0.3) probably_damaging(0.956) TCGA-LN-A49S-01 4 56837473 56837473 G C CEP135 Missense_Mutation p.S383T 0.28 tolerated(0.41) benign(0.006) TCGA-LN-A49S-01 4 65180404 65180404 T C TECRL Silent p.G171G 0.37 TCGA-LN-A49S-01 4 80247136 80247136 A C NAA11 5'UTR 0.16 TCGA-LN-A49S-01 5 10254857 10254857 A G CCT5 Missense_Mutation p.M80V 0.33 deleterious(0.03) benign(0.007) TCGA-LN-A49S-01 5 126860507 126860507 A G PRRC1 Missense_Mutation p.I130V 0.10 tolerated_low_confidence(0.56) benign(0.004) TCGA-LN-A49S-01 5 140574310 140574310 G C PCDHB10 Missense_Mutation p.V729L 0.10 tolerated_low_confidence(0.05) benign(0.022) TCGA-LN-A49S-01 5 14709981 14709981 A C ANKH 3'UTR 0.24 TCGA-LN-A49S-01 5 147258323 147258323 T A SCGB3A2 5'UTR 0.17 TCGA-LN-A49S-01 5 156671337 156671337 T G ITK Missense_Mutation p.L433R 0.18 deleterious(0) probably_damaging(0.996) TCGA-LN-A49S-01 5 24537678 24537678 C T CDH10 Missense_Mutation p.A113T 0.14 deleterious(0.01) probably_damaging(0.992) TCGA-LN-A49S-01 6 136597032 136597032 C T BCLAF1 Missense_Mutation p.R544H 0.04 tolerated(0.09) possibly_damaging(0.715) TCGA-LN-A49S-01 6 139170415 139170415 G A ECT2L Missense_Mutation p.E305K 0.06 tolerated(0.08) benign(0.034) TCGA-LN-A49S-01 6 30038738 30038738 T A RNF39 3'UTR 0.31 TCGA-LN-A49S-01 6 30955265 30955265 C G MUC21 Missense_Mutation p.S438C 0.09 deleterious(0.01) unknown(0) TCGA-LN-A49S-01 6 31731219 31731219 G A SAPCD1 Missense_Mutation p.E48K 0.07 deleterious(0.02) benign(0.187) TCGA-LN-A49S-01 6 31914956 31914956 C A CFB Silent p.I659I 0.16 TCGA-LN-A49S-01 6 33653186 33653186 C T ITPR3 Silent p.F1786F 0.11 TCGA-LN-A49S-01 6 35437953 35437953 C A RPL10A Intron 0.19 TCGA-LN-A49S-01 6 36198407 36198407 C T BRPF3 3'UTR 0.06 TCGA-LN-A49S-01 6 4115751 4115751 C T C6orf201 Intron 0.10 TCGA-LN-A49S-01 6 56426280 56426280 G C DST Silent p.L2089L 0.05 TCGA-LN-A49S-01 6 93951484 93951484 A C EPHA7 3'UTR 0.14 TCGA-LN-A49S-01 7 103151393 103151393 C T RELN Missense_Mutation p.D2727N 0.08 tolerated(0.25) probably_damaging(0.985) TCGA-LN-A49S-01 7 107258830 107258830 A G BCAP29 Missense_Mutation p.N276S 0.51 deleterious_low_confidence(0.04) benign(0.005) TCGA-LN-A49S-01 7 110764419 110764419 G C LRRN3 Missense_Mutation p.D531H 0.10 tolerated(0.09) possibly_damaging(0.83) TCGA-LN-A49S-01 7 120906460 120906460 G A CPED1 Silent p.L830L 0.08 TCGA-LN-A49S-01 7 143701769 143701769 G A OR6B1 Missense_Mutation p.C227Y 0.30 deleterious(0) benign(0.005) TCGA-LN-A49S-01 7 7278131 7278131 G C C1GALT1 Missense_Mutation p.E156Q 0.10 tolerated(0.64) benign(0.039) TCGA-LN-A49S-01 7 7572463 7572463 G A COL28A1 Missense_Mutation p.A15V 0.22 tolerated(0.6) benign(0.002) TCGA-LN-A49S-01 8 10469643 10469643 G T RP1L1 Silent p.G655G 0.18 TCGA-LN-A49S-01 8 106816123 106816123 G A ZFPM2 3'UTR 0.13 TCGA-LN-A49S-01 8 113326823 113326823 G A CSMD3 Missense_Mutation p.R2462W 0.25 tolerated(0.15) probably_damaging(0.997) TCGA-LN-A49S-01 8 119123371 119123371 T - EXT1 5'UTR 0.08 TCGA-LN-A49S-01 8 145640648 145640648 G A SLC39A4 Silent p.F210F 0.29 TCGA-LN-A49S-01 8 61178529 61178529 C T CA8 Silent p.Q124Q 0.33 TCGA-LN-A49S-01 9 100617344 100617344 G C FOXE1 3'UTR 0.08 TCGA-LN-A49S-01 9 117139229 117139229 T C AKNA Silent p.R286R 0.39 TCGA-LN-A49S-01 9 123942066 123942066 G C RAB14 3'UTR 0.10 TCGA-LN-A49S-01 9 123942822 123942822 G C RAB14 3'UTR 0.25 TCGA-LN-A49S-01 9 132995350 132995350 C T NCS1 3'UTR 0.10 TCGA-LN-A49S-01 9 17761480 17761480 A T SH3GL2 Missense_Mutation p.T54S 0.07 tolerated(0.06) benign(0.142) TCGA-LN-A49S-01 9 33548488 33548488 C G ANKRD18B Missense_Mutation p.L506V 0.39 deleterious(0) probably_damaging(0.954) TCGA-LN-A49S-01 9 4697769 4697769 A G CDC37L1 Missense_Mutation p.M213V 0.06 deleterious(0) possibly_damaging(0.788) TCGA-LN-A49S-01 9 69113648 69113648 G C RP11-87H9.3 5'Flank 0.09 TCGA-LN-A49S-01 9 77377554 77377554 G A TRPM6 Missense_Mutation p.L1345F 0.16 deleterious_low_confidence(0.01) benign(0.111) TCGA-LN-A49S-01 9 78973602 78973602 G T PCSK5 Missense_Mutation p.A1783S 0.21 tolerated(0.51) benign(0.007) TCGA-LN-A49S-01 9 84531951 84531951 C A SPATA31D5P RNA 0.05 TCGA-LN-A49S-01 X 131348451 131348451 T A RAP2C Missense_Mutation p.Q99H 0.34 deleterious(0.02) possibly_damaging(0.863) TCGA-LN-A49S-01 X 144904330 144904330 C A SLITRK2 Silent p.T129T 0.12 TCGA-LN-A49S-01 X 25028418 25028418 C T ARX Missense_Mutation p.E360K 0.11 deleterious(0.02) benign(0.3) TCGA-LN-A49S-01 X 39921446 39921446 G C BCOR Silent p.V1458V 0.08 TCGA-LN-A49S-01 X 46696586 46696586 C A RP2 Silent p.P17P 0.12 TCGA-LN-A49S-01 X 51636756 51636756 G T MAGED1 5'UTR 0.23 TCGA-LN-A49S-01 X 55748670 55748670 A T RRAGB Missense_Mutation p.I60F 0.18 deleterious(0) probably_damaging(0.997) TCGA-LN-A49S-01 X 62570980 62570980 G A SPIN4 5'UTR 0.12 TCGA-LN-A49S-01 X 62875450 62875450 C G ARHGEF9 Missense_Mutation p.K408N 0.11 deleterious(0) probably_damaging(0.965) TCGA-LN-A49S-01 X 85117335 85117335 C G CHM 3'UTR 0.11 TCGA-LN-A49U-01 10 12277093 12277093 G A CDC123 Missense_Mutation p.R179Q 0.16 deleterious(0.01) probably_damaging(0.989) TCGA-LN-A49U-01 10 135086008 135086008 C T ADAM8 Missense_Mutation p.D263N 0.70 tolerated(1) benign(0.001) TCGA-LN-A49U-01 10 27497335 27497335 C T ACBD5 Missense_Mutation p.R415Q 0.47 tolerated(0.35) benign(0.004) TCGA-LN-A49U-01 10 35805450 35805450 G A CCNY Splice_Site p.X89_splice 0.24 TCGA-LN-A49U-01 10 37486225 37486225 A C ANKRD30A Silent p.P821P 0.41 TCGA-LN-A49U-01 10 60994160 60994161 TT - PHYHIPL Frame_Shift_Del p.S69Mfs*17 0.14 TCGA-LN-A49U-01 10 96100090 96100090 T C NOC3L Missense_Mutation p.I575V 0.41 tolerated(0.09) possibly_damaging(0.699) TCGA-LN-A49U-01 11 10821682 10821682 C T EIF4G2 Missense_Mutation p.E692K 0.36 tolerated(0.1) benign(0.244) TCGA-LN-A49U-01 11 116619061 116619061 C G BUD13 3'UTR 0.36 TCGA-LN-A49U-01 11 118124581 118124581 A T MPZL2 3'UTR 0.28 TCGA-LN-A49U-01 11 133796853 133796853 C A IGSF9B Nonsense_Mutation p.G589* 0.37 TCGA-LN-A49U-01 11 14498549 14498549 T C COPB1 Silent p.G457G 0.29 TCGA-LN-A49U-01 11 14793546 14793547 - AT PDE3B Intron 0.22 TCGA-LN-A49U-01 11 15096643 15096643 C T CALCB Silent p.L41L 0.24 TCGA-LN-A49U-01 11 28232685 28232685 A G METTL15 Missense_Mutation p.Y116C 0.38 deleterious(0) probably_damaging(0.964) TCGA-LN-A49U-01 11 3040371 3040371 C T CARS Missense_Mutation p.E465K 0.40 deleterious(0) probably_damaging(0.997) TCGA-LN-A49U-01 11 46563784 46563784 C T AMBRA1 Missense_Mutation p.E505K 0.33 tolerated_low_confidence(0.06) probably_damaging(0.956) TCGA-LN-A49U-01 11 47437463 47437469 CACTCAG - SLC39A13 3'UTR 0.44 TCGA-LN-A49U-01 11 56020398 56020398 C A OR5T3 Silent p.I241I 0.39 TCGA-LN-A49U-01 11 64938815 64938815 C T SPDYC Missense_Mutation p.S15F 0.57 deleterious_low_confidence(0.01) benign(0.099) TCGA-LN-A49U-01 11 67395589 67395589 C A NUDT8 Missense_Mutation p.G180V 0.35 deleterious(0) probably_damaging(1) TCGA-LN-A49U-01 11 70034989 70034989 A G ANO1 3'UTR 0.38 TCGA-LN-A49U-01 11 73941869 73941869 C G PPME1 Intron 0.44 TCGA-LN-A49U-01 12 118693355 118693355 C T TAOK3 Silent p.L6L 0.56 TCGA-LN-A49U-01 12 124116905 124116905 C G EIF2B1 Missense_Mutation p.L34F 0.40 deleterious(0.01) benign(0.252) TCGA-LN-A49U-01 12 130184990 130184990 C A TMEM132D Missense_Mutation p.M111I 0.38 deleterious(0.02) benign(0.025) TCGA-LN-A49U-01 12 130184991 130184991 A C TMEM132D Missense_Mutation p.M111R 0.40 deleterious(0) possibly_damaging(0.622) TCGA-LN-A49U-01 12 130520932 130520932 G C RP11-474D1.3 RNA 0.23 TCGA-LN-A49U-01 12 49435976 49435976 C A KMT2D Missense_Mutation p.S2002I 0.53 probably_damaging(0.959) TCGA-LN-A49U-01 12 50236730 50236730 G T BCDIN3D Silent p.L47L 0.38 TCGA-LN-A49U-01 12 51375412 51375412 C G SLC11A2 3'Flank 0.36 TCGA-LN-A49U-01 12 54369204 54369204 G C HOXC11 3'UTR 0.35 TCGA-LN-A49U-01 12 54383371 54383371 T A HOXC10 3'UTR 0.55 TCGA-LN-A49U-01 12 54520191 54520191 G A RP11-834C11.4 RNA 0.29 TCGA-LN-A49U-01 12 6980330 6980330 C A SPSB2 3'UTR 0.33 TCGA-LN-A49U-01 12 79986092 79986092 C G PAWR 3'UTR 0.43 TCGA-LN-A49U-01 13 115090850 115090850 C T CHAMP1 Silent p.A511A 0.62 TCGA-LN-A49U-01 13 19748259 19748259 C A TUBA3C Missense_Mutation p.G366V 0.65 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-LN-A49U-01 13 21357559 21357559 T C XPO4 3'UTR 0.57 TCGA-LN-A49U-01 13 28908259 28908259 T G FLT1 Silent p.S832S 0.80 TCGA-LN-A49U-01 13 32976725 32976725 G A N4BP2L1 3'UTR 0.85 TCGA-LN-A49U-01 13 73345944 73345944 G A DIS3 Missense_Mutation p.L532F 0.21 deleterious(0) probably_damaging(1) TCGA-LN-A49U-01 14 104640529 104640529 C T KIF26A Missense_Mutation p.A692V 0.77 tolerated(0.37) benign(0.038) TCGA-LN-A49U-01 14 20404131 20404131 C T OR4K1 Silent p.F102F 0.34 TCGA-LN-A49U-01 14 24687342 24687342 T C NEDD8-MDP1 Missense_Mutation p.Q49R 0.79 tolerated(0.25) benign(0.006) TCGA-LN-A49U-01 15 59750766 59750766 G C FAM81A 5'UTR 0.49 TCGA-LN-A49U-01 15 66615878 66615878 C G DIS3L Missense_Mutation p.S541C 0.39 deleterious(0.01) possibly_damaging(0.759) TCGA-LN-A49U-01 15 75190157 75190157 C G MPI 3'UTR 0.29 TCGA-LN-A49U-01 15 86262365 86262365 C T AKAP13 Silent p.Y2024Y 0.43 TCGA-LN-A49U-01 16 15854505 15854505 T C MYH11 Silent p.K387K 0.37 TCGA-LN-A49U-01 16 239289 239289 T A LUC7L Missense_Mutation p.S342C 0.53 deleterious_low_confidence(0) unknown(0) TCGA-LN-A49U-01 16 30734343 30734343 C T SRCAP Missense_Mutation p.R1318W 0.21 possibly_damaging(0.689) TCGA-LN-A49U-01 16 4777008 4777008 T C ANKS3 Missense_Mutation p.N114S 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-LN-A49U-01 16 51173802 51173802 G A SALL1 Silent p.N777N 0.33 TCGA-LN-A49U-01 16 52473227 52473227 G C TOX3 Missense_Mutation p.I547M 0.48 deleterious_low_confidence(0) unknown(0) TCGA-LN-A49U-01 16 66755061 66755061 G A DYNC1LI2 3'UTR 0.26 TCGA-LN-A49U-01 16 67968725 67968729 TCAGT - PSMB10 Frame_Shift_Del p.S229Tfs*46 0.29 TCGA-LN-A49U-01 16 72130051 72130051 C A DHX38 5'UTR 0.48 TCGA-LN-A49U-01 17 28793667 28793667 G C CPD 3'UTR 0.22 TCGA-LN-A49U-01 17 37564050 37564050 G A MED1 Missense_Mutation p.S1475F 0.53 deleterious_low_confidence(0) unknown(0) TCGA-LN-A49U-01 17 39411984 39411984 A G KRTAP9-9 Missense_Mutation p.Y116C 0.51 tolerated(0.12) probably_damaging(0.929) TCGA-LN-A49U-01 17 39616156 39616156 G C KRT32 3'UTR 0.38 TCGA-LN-A49U-01 17 42030684 42030684 G C PYY Silent p.L56L 0.27 TCGA-LN-A49U-01 17 44841730 44841730 C T WNT3 3'UTR 0.56 TCGA-LN-A49U-01 17 56343639 56343639 G A LPO Missense_Mutation p.D549N 0.18 deleterious(0) probably_damaging(1) TCGA-LN-A49U-01 17 73774026 73774026 G A H3F3B 3'UTR 0.32 TCGA-LN-A49U-01 17 7579315 7579315 G T TP53 Nonsense_Mutation p.C124* 0.78 TCGA-LN-A49U-01 18 30092380 30092380 C G WBP11P1 RNA 0.43 TCGA-LN-A49U-01 18 77473117 77473117 G C CTDP1 Missense_Mutation p.E337Q 0.33 deleterious(0) possibly_damaging(0.878) TCGA-LN-A49U-01 18 8244113 8244113 G A PTPRM Silent p.V786V 0.28 TCGA-LN-A49U-01 19 11476057 11476057 G C DKFZP761J1410 3'UTR 0.43 TCGA-LN-A49U-01 19 22940566 22940566 G A ZNF99 Silent p.S715S 0.40 TCGA-LN-A49U-01 19 39665640 39665640 G A PAK4 Missense_Mutation p.E390K 0.22 deleterious(0) probably_damaging(0.971) TCGA-LN-A49U-01 19 40477127 40477127 C G PSMC4 Missense_Mutation p.I6M 0.36 deleterious_low_confidence(0) benign(0.372) TCGA-LN-A49U-01 19 4219681 4219681 G A ANKRD24 Missense_Mutation p.E1033K 0.32 tolerated(0.15) probably_damaging(0.911) TCGA-LN-A49U-01 19 48945210 48945210 G A GRIN2D Missense_Mutation p.D813N 0.23 tolerated(0.2) probably_damaging(0.916) TCGA-LN-A49U-01 19 49140364 49140364 T A DBP 5'UTR 0.38 TCGA-LN-A49U-01 19 50783319 50783319 C T MYH14 Missense_Mutation p.A1353V 0.19 tolerated(0.3) benign(0.01) TCGA-LN-A49U-01 19 53385226 53385226 G A ZNF320 Silent p.S51S 0.28 TCGA-LN-A49U-01 19 56388480 56388480 C A NLRP4 Missense_Mutation p.Q882K 0.30 tolerated(1) benign(0.001) TCGA-LN-A49U-01 19 58232613 58232613 C A ZNF671 Nonsense_Mutation p.G281* 0.09 TCGA-LN-A49U-01 19 59068438 59068438 G A UBE2M Missense_Mutation p.P66S 0.67 deleterious(0) probably_damaging(1) TCGA-LN-A49U-01 19 811243 811243 G C PTBP1 3'UTR 0.58 TCGA-LN-A49U-01 1 109817677 109817677 C G CELSR2 3'UTR 0.42 TCGA-LN-A49U-01 1 1169484 1169484 C T B3GALT6 3'UTR 0.31 TCGA-LN-A49U-01 1 150783957 150783957 C T ARNT 3'UTR 0.21 TCGA-LN-A49U-01 1 154438564 154438564 G T IL6R 3'UTR 0.13 TCGA-LN-A49U-01 1 156269121 156269121 G A VHLL 5'UTR 0.28 TCGA-LN-A49U-01 1 156269245 156269245 G C VHLL 5'UTR 0.19 TCGA-LN-A49U-01 1 160186742 160186742 G C DCAF8 3'UTR 0.26 TCGA-LN-A49U-01 1 160465850 160465850 C G SLAMF6 Splice_Site p.X128_splice 0.21 TCGA-LN-A49U-01 1 16091469 16091469 A T FBLIM1 5'UTR 0.34 TCGA-LN-A49U-01 1 1634944 1634944 G C CDK11A Silent p.L677L 0.34 TCGA-LN-A49U-01 1 174418064 174418064 G A GPR52 Missense_Mutation p.S272N 0.32 deleterious(0) probably_damaging(0.999) TCGA-LN-A49U-01 1 178426981 178426981 G A RASAL2 Missense_Mutation p.D852N 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-LN-A49U-01 1 178427011 178427011 G C RASAL2 Missense_Mutation p.E862Q 0.26 tolerated(0.5) benign(0.088) TCGA-LN-A49U-01 1 185144184 185144184 G A SWT1 Missense_Mutation p.R302Q 0.28 tolerated(0.58) benign(0.116) TCGA-LN-A49U-01 1 186352217 186352217 G A C1orf27 Missense_Mutation p.E55K 0.50 tolerated(0.08) probably_damaging(0.969) TCGA-LN-A49U-01 1 190250712 190250712 G C BRINP3 Missense_Mutation p.F135L 0.19 tolerated(0.3) benign(0.015) TCGA-LN-A49U-01 1 200826893 200826893 A G CAMSAP2 Silent p.K1381K 0.56 TCGA-LN-A49U-01 1 201185638 201185638 G A IGFN1 Missense_Mutation p.V3118I 0.26 possibly_damaging(0.66) TCGA-LN-A49U-01 1 201453557 201453557 C T CSRP1 3'UTR 0.34 TCGA-LN-A49U-01 1 206810256 206810256 C T DYRK3 Intron 0.27 TCGA-LN-A49U-01 1 21042067 21042067 G A KIF17 Silent p.F99F 0.24 TCGA-LN-A49U-01 1 21100185 21100185 G C HP1BP3 Intron 0.31 TCGA-LN-A49U-01 1 211447585 211447585 A G RCOR3 Missense_Mutation p.H112R 0.25 deleterious(0) probably_damaging(0.993) TCGA-LN-A49U-01 1 214802455 214802455 G A CENPF Missense_Mutation p.E379K 0.28 benign(0.443) TCGA-LN-A49U-01 1 220440993 220440993 G T RAB3GAP2 Intron 0.20 TCGA-LN-A49U-01 1 228346302 228346302 C T GJC2 Silent p.L281L 0.26 TCGA-LN-A49U-01 1 232579369 232579369 C T SIPA1L2 Missense_Mutation p.R1139K 0.17 tolerated(0.32) benign(0.269) TCGA-LN-A49U-01 1 236914838 236914838 C A ACTN2 Silent p.I575I 0.23 TCGA-LN-A49U-01 1 248685431 248685431 C T OR2G6 Missense_Mutation p.L162F 0.28 tolerated(0.14) benign(0.097) TCGA-LN-A49U-01 1 249142293 249142293 C T ZNF672 Missense_Mutation p.R274W 0.28 deleterious(0) probably_damaging(0.91) TCGA-LN-A49U-01 1 35576032 35576032 G A ZMYM1 Silent p.K315K 0.40 TCGA-LN-A49U-01 1 45474116 45474116 T C HECTD3 Intron 0.33 TCGA-LN-A49U-01 1 55064996 55064996 G A ACOT11 Silent p.L264L 0.37 TCGA-LN-A49U-01 1 6517321 6517321 G C ESPN Missense_Mutation p.E801D 0.39 deleterious(0) probably_damaging(0.997) TCGA-LN-A49U-01 1 6520077 6520077 G A ESPN Silent p.Q812Q 0.30 TCGA-LN-A49U-01 1 6682503 6682503 C T PHF13 3'UTR 0.39 TCGA-LN-A49U-01 20 30584580 30584580 A C XKR7 Missense_Mutation p.K354Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-LN-A49U-01 20 33508430 33508430 G C ACSS2 Missense_Mutation p.W367S 0.28 deleterious(0) probably_damaging(1) TCGA-LN-A49U-01 20 33508850 33508850 G A ACSS2 Nonsense_Mutation p.W408* 0.33 TCGA-LN-A49U-01 20 33509173 33509173 G A ACSS2 Missense_Mutation p.E453K 0.28 deleterious(0) probably_damaging(0.999) TCGA-LN-A49U-01 20 33509628 33509628 G A ACSS2 Missense_Mutation p.E516K 0.41 tolerated(0.07) probably_damaging(0.999) TCGA-LN-A49U-01 20 33509640 33509640 G A ACSS2 Missense_Mutation p.E520K 0.41 tolerated(0.06) probably_damaging(0.999) TCGA-LN-A49U-01 20 33509658 33509658 G A ACSS2 Missense_Mutation p.E526K 0.37 deleterious(0.04) probably_damaging(0.947) TCGA-LN-A49U-01 20 35242200 35242200 G A SLA2 3'UTR 0.54 TCGA-LN-A49U-01 20 35242214 35242214 G A SLA2 3'UTR 0.52 TCGA-LN-A49U-01 20 35242308 35242308 G C SLA2 Missense_Mutation p.I249M 0.38 tolerated(0.07) benign(0.03) TCGA-LN-A49U-01 20 35242375 35242375 G C SLA2 Missense_Mutation p.S227C 0.24 deleterious(0.01) possibly_damaging(0.694) TCGA-LN-A49U-01 20 35242776 35242776 G C SLA2 Silent p.L199L 0.22 TCGA-LN-A49U-01 20 35242812 35242812 G C SLA2 Silent p.L187L 0.22 TCGA-LN-A49U-01 20 35242824 35242824 G C SLA2 Missense_Mutation p.I183M 0.20 deleterious(0.01) possibly_damaging(0.698) TCGA-LN-A49U-01 20 44674582 44674582 C T SLC12A5 Silent p.C568C 0.35 TCGA-LN-A49U-01 22 36587208 36587208 G T APOL4 Missense_Mutation p.A323D 0.10 deleterious(0) probably_damaging(0.996) TCGA-LN-A49U-01 22 39620375 39620375 T A PDGFB 3'UTR 0.60 TCGA-LN-A49U-01 22 46098580 46098580 A G ATXN10 Missense_Mutation p.N167S 0.41 tolerated(0.39) benign(0.077) TCGA-LN-A49U-01 22 50279480 50279480 G A ZBED4 Missense_Mutation p.E724K 0.42 deleterious(0) probably_damaging(0.967) TCGA-LN-A49U-01 2 10187774 10187775 - A KLF11 Intron 0.20 TCGA-LN-A49U-01 2 120799600 120799600 G A EPB41L5 Missense_Mutation p.E67K 0.32 tolerated(0.05) benign(0.405) TCGA-LN-A49U-01 2 131175859 131175859 C T FAR2P2 RNA 0.30 TCGA-LN-A49U-01 2 157186483 157186483 G A NR4A2 Silent p.D72D 0.44 TCGA-LN-A49U-01 2 174774748 174774748 G C SP3 Missense_Mutation p.T756S 0.30 tolerated(0.38) probably_damaging(0.931) TCGA-LN-A49U-01 2 183943626 183943626 A - DUSP19 5'UTR 0.31 TCGA-LN-A49U-01 2 219269237 219269237 C A CTDSP1 3'UTR 0.33 TCGA-LN-A49U-01 2 219527683 219527683 G A BCS1L Missense_Mutation p.E323K 0.37 deleterious(0) probably_damaging(0.996) TCGA-LN-A49U-01 2 220037669 220037669 G A CNPPD1 Missense_Mutation p.S291F 0.37 deleterious_low_confidence(0.04) benign(0.001) TCGA-LN-A49U-01 2 222433469 222433469 A T EPHA4 Missense_Mutation p.L43H 0.36 deleterious(0) probably_damaging(0.98) TCGA-LN-A49U-01 2 232573421 232573421 C G PTMA Nonsense_Mutation p.S2* 0.24 TCGA-LN-A49U-01 2 242756095 242756095 G T NEU4 Missense_Mutation p.A83S 0.43 tolerated(0.8) benign(0.045) TCGA-LN-A49U-01 2 26596361 26596361 G A EPT1 Missense_Mutation p.R146K 0.40 deleterious(0.01) possibly_damaging(0.856) TCGA-LN-A49U-01 2 27599874 27599874 A T SNX17 3'UTR 0.44 TCGA-LN-A49U-01 2 55470218 55470218 T C MTIF2 Splice_Site p.X522_splice 0.46 TCGA-LN-A49U-01 2 73678197 73678197 G A ALMS1 Missense_Mutation p.A1514T 0.38 benign(0) TCGA-LN-A49U-01 2 97475826 97475826 C A CNNM4 3'UTR 0.20 TCGA-LN-A49U-01 3 121547357 121547357 C T IQCB1 Missense_Mutation p.G75S 0.05 deleterious(0) probably_damaging(0.999) TCGA-LN-A49U-01 3 122447375 122447375 T C PARP14 Silent p.H1779H 0.44 TCGA-LN-A49U-01 3 130613527 130613527 C A ATP2C1 Intron 0.11 TCGA-LN-A49U-01 3 154146875 154146875 C G GPR149 Missense_Mutation p.R177P 0.42 tolerated(1) benign(0.023) TCGA-LN-A49U-01 3 167452469 167452469 C T PDCD10 5'UTR 0.57 TCGA-LN-A49U-01 3 167632982 167632982 G C RP11-298O21.5 RNA 0.25 TCGA-LN-A49U-01 3 185155326 185155326 G A MAP3K13 Silent p.A189A 0.29 TCGA-LN-A49U-01 3 195518038 195518038 A G MUC4 Missense_Mutation p.I138T 0.38 unknown(0) TCGA-LN-A49U-01 3 45266057 45266057 C T TMEM158 3'UTR 0.63 TCGA-LN-A49U-01 3 45266072 45266072 C T TMEM158 3'UTR 0.64 TCGA-LN-A49U-01 3 45266243 45266243 C T TMEM158 3'UTR 0.70 TCGA-LN-A49U-01 3 45266411 45266411 C T TMEM158 3'UTR 0.75 TCGA-LN-A49U-01 4 100820811 100820811 C A DNAJB14 3'UTR 0.64 TCGA-LN-A49U-01 4 7056084 7056084 C G TADA2B Missense_Mutation p.S189C 0.70 tolerated(0.06) benign(0.009) TCGA-LN-A49U-01 4 7058162 7058162 C G TADA2B 3'UTR 0.69 TCGA-LN-A49U-01 4 7058164 7058164 C T TADA2B 3'UTR 0.73 TCGA-LN-A49U-01 4 71508640 71508640 A T ENAM Silent p.G499G 0.50 TCGA-LN-A49U-01 4 83776067 83776067 G A SEC31A Missense_Mutation p.S666L 0.70 tolerated(0.05) benign(0.261) TCGA-LN-A49U-01 4 88977399 88977399 C T PKD2 Silent p.F626F 0.38 TCGA-LN-A49U-01 5 140476527 140476527 G C PCDHB2 Missense_Mutation p.R718T 0.50 deleterious_low_confidence(0) probably_damaging(0.917) TCGA-LN-A49U-01 5 167517587 167517587 C T TENM2 Silent p.F508F 0.55 TCGA-LN-A49U-01 5 56545287 56545287 C T GPBP1 Missense_Mutation p.R293C 0.44 deleterious(0) probably_damaging(0.96) TCGA-LN-A49U-01 5 86645150 86645150 C T RASA1 Nonsense_Mutation p.Q408* 0.50 TCGA-LN-A49U-01 5 9043022 9043022 T A SEMA5A Missense_Mutation p.Y1071F 0.42 tolerated_low_confidence(0.07) probably_damaging(0.993) TCGA-LN-A49U-01 6 105177163 105177163 T C HACE1 3'UTR 0.39 TCGA-LN-A49U-01 6 13295560 13295560 G A TBC1D7 Intron 0.39 TCGA-LN-A49U-01 6 27860488 27860488 G C HIST1H2AM 3'UTR 0.37 TCGA-LN-A49U-01 6 28331513 28331513 A G ZKSCAN3 Silent p.E226E 0.34 TCGA-LN-A49U-01 6 30711532 30711547 TGCGCCTCGGTCTCTG - IER3 3'UTR 0.21 TCGA-LN-A49U-01 6 3154963 3154963 C G TUBB2A Missense_Mutation p.E158Q 0.38 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-LN-A49U-01 6 31797494 31797494 G A HSPA1B Silent p.K589K 0.35 TCGA-LN-A49U-01 6 35211826 35211826 C T SCUBE3 Missense_Mutation p.R720W 0.24 deleterious(0) probably_damaging(1) TCGA-LN-A49U-01 6 41250446 41250446 C T TREM1 Silent p.L31L 0.41 TCGA-LN-A49U-01 6 43005697 43005697 C T CUL7 Missense_Mutation p.S1693N 0.36 tolerated(0.1) benign(0.03) TCGA-LN-A49U-01 6 50815165 50815165 T C TFAP2B 3'UTR 0.37 TCGA-LN-A49U-01 6 57018677 57018677 C T ZNF451 Nonsense_Mutation p.Q968* 0.45 TCGA-LN-A49U-01 6 76005486 76005487 - A RP1-234P15.4 3'Flank 0.33 TCGA-LN-A49U-01 6 87967531 87967531 C G ZNF292 Missense_Mutation p.S1395C 0.29 deleterious(0) probably_damaging(0.999) TCGA-LN-A49U-01 6 97599743 97599743 A T MMS22L Missense_Mutation p.V1129D 0.41 deleterious(0) probably_damaging(0.997) TCGA-LN-A49U-01 6 97613184 97613184 C G MMS22L Missense_Mutation p.L1053F 0.37 deleterious(0.04) possibly_damaging(0.696) TCGA-LN-A49U-01 7 102836007 102836007 G C DPY19L2P2 RNA 0.28 TCGA-LN-A49U-01 7 103159843 103159843 C T RELN Missense_Mutation p.E2597K 0.20 tolerated(0.07) probably_damaging(0.999) TCGA-LN-A49U-01 7 105183050 105183050 C T RINT1 Missense_Mutation p.R157C 0.23 deleterious(0) possibly_damaging(0.893) TCGA-LN-A49U-01 7 11143171 11143171 C G PHF14 3'UTR 0.32 TCGA-LN-A49U-01 7 131848918 131848918 T A PLXNA4 Missense_Mutation p.I1495F 0.52 deleterious(0) possibly_damaging(0.879) TCGA-LN-A49U-01 7 149512296 149512296 G C SSPO RNA 0.26 TCGA-LN-A49U-01 7 149512798 149512798 G A SSPO RNA 0.64 TCGA-LN-A49U-01 7 154746044 154746044 G C PAXIP1 Missense_Mutation p.F914L 0.27 tolerated(0.21) unknown(0) TCGA-LN-A49U-01 7 17929992 17929992 G C SNX13 Missense_Mutation p.A145G 0.53 deleterious(0.02) benign(0.127) TCGA-LN-A49U-01 7 17929993 17929993 C T SNX13 Missense_Mutation p.A145T 0.51 tolerated(0.1) benign(0.038) TCGA-LN-A49U-01 7 24903154 24903155 - AGGA OSBPL3 Frame_Shift_Ins p.H247Pfs*19 0.27 TCGA-LN-A49U-01 7 47698758 47698758 C A C7orf65 Missense_Mutation p.Q130K 0.27 deleterious_low_confidence(0) benign(0.092) TCGA-LN-A49U-01 7 4901496 4901496 C A PAPOLB 5'UTR 0.59 TCGA-LN-A49U-01 7 56125732 56125732 A T CCT6A Missense_Mutation p.M221L 0.55 deleterious(0.03) possibly_damaging(0.545) TCGA-LN-A49U-01 7 5951496 5951496 C T CCZ1 Missense_Mutation p.A262V 0.31 tolerated(0.26) possibly_damaging(0.69) TCGA-LN-A49U-01 7 6210572 6210572 G C CYTH3 Silent p.L200L 0.19 TCGA-LN-A49U-01 7 6210939 6210939 G C CYTH3 Missense_Mutation p.F152L 0.27 deleterious(0.02) possibly_damaging(0.736) TCGA-LN-A49U-01 7 94060483 94060483 A G COL1A2 3'UTR 0.54 TCGA-LN-A49U-01 7 99688533 99688533 C T COPS6 Silent p.V165V 0.31 TCGA-LN-A49U-01 8 101725016 101725016 G T PABPC1 Missense_Mutation p.A247D 0.37 deleterious(0) probably_damaging(0.982) TCGA-LN-A49U-01 8 10355353 10355353 C G PRSS51 RNA 0.32 TCGA-LN-A49U-01 8 110575650 110575650 C T EBAG9 Intron 0.56 TCGA-LN-A49U-01 8 113316958 113316958 T C CSMD3 Missense_Mutation p.Y2753C 0.29 tolerated(0.17) probably_damaging(0.932) TCGA-LN-A49U-01 8 116423557 116423557 T C TRPS1 3'UTR 0.26 TCGA-LN-A49U-01 8 144464122 144464122 C G RHPN1 Missense_Mutation p.S594C 0.43 deleterious(0.01) possibly_damaging(0.631) TCGA-LN-A49U-01 8 144464685 144464685 C G RHPN1 Missense_Mutation p.S626C 0.37 deleterious(0) benign(0.009) TCGA-LN-A49U-01 8 145701071 145701071 C T FOXH1 Silent p.R23R 0.20 TCGA-LN-A49U-01 8 20106566 20106566 C G LZTS1 3'UTR 0.39 TCGA-LN-A49U-01 8 22481554 22481554 C G BIN3 Missense_Mutation p.E163D 0.28 tolerated(0.11) benign(0.006) TCGA-LN-A49U-01 8 42586882 42586882 C T CHRNB3 Silent p.T144T 0.30 TCGA-LN-A49U-01 8 89052919 89052919 G A MMP16 3'UTR 0.52 TCGA-LN-A49U-01 9 100892121 100892121 T A CORO2A Missense_Mutation p.S308C 0.44 deleterious(0) possibly_damaging(0.676) TCGA-LN-A49U-01 9 117165569 117165569 C T DFNB31 Silent p.A823A 0.47 TCGA-LN-A49U-01 9 125680812 125680812 G A ZBTB26 3'UTR 0.41 TCGA-LN-A49U-01 9 126133015 126133015 G A CRB2 Silent p.P561P 0.40 TCGA-LN-A49U-01 9 33923379 33923379 G C UBAP2 Missense_Mutation p.T965R 0.31 deleterious(0) unknown(0) TCGA-LN-A49U-01 9 4719272 4719272 C T AK3 Missense_Mutation p.D103N 0.73 tolerated(0.38) benign(0.011) TCGA-LN-A49U-01 9 86618906 86618908 TGT - RMI1 3'UTR 0.15 TCGA-LN-A49U-01 9 90502183 90502183 G A SPATA31E1 Silent p.Q927Q 0.39 TCGA-LN-A49U-01 X 130222715 130222715 C G ARHGAP36 Missense_Mutation p.R534G 0.77 deleterious_low_confidence(0.02) benign(0.123) TCGA-LN-A49U-01 X 153631450 153631450 C T DNASE1L1 Missense_Mutation p.E203K 0.66 tolerated(0.41) benign(0.01) TCGA-LN-A49U-01 X 153631637 153631637 C T RPL10 3'Flank 0.83 TCGA-LN-A49U-01 X 153631661 153631661 C T RPL10 3'Flank 0.72 TCGA-LN-A49U-01 X 153633251 153633251 C G DNASE1L1 Missense_Mutation p.D77H 0.70 deleterious(0.03) possibly_damaging(0.513) TCGA-LN-A49U-01 X 153637474 153637474 C G DNASE1L1 5'UTR 0.84 TCGA-LN-A49U-01 X 47775250 47775250 A G ZNF81 Missense_Mutation p.N402S 0.87 tolerated(0.82) benign(0.036) TCGA-LN-A49V-01 10 104161038 104161038 C T NFKB2 Nonsense_Mutation p.R725* 0.19 TCGA-LN-A49V-01 10 104574691 104574691 C T WBP1L 3'UTR 0.20 TCGA-LN-A49V-01 10 115986888 115986888 T G TDRD1 Missense_Mutation p.F1078C 0.33 deleterious(0.02) probably_damaging(0.938) TCGA-LN-A49V-01 10 117221465 117221465 G T ATRNL1 Missense_Mutation p.D1113Y 0.38 deleterious(0) probably_damaging(0.959) TCGA-LN-A49V-01 10 118425180 118425180 G A C10orf82 Silent p.S71S 0.14 TCGA-LN-A49V-01 10 133946999 133946999 G A JAKMIP3 Missense_Mutation p.A273T 0.30 tolerated(0.21) possibly_damaging(0.693) TCGA-LN-A49V-01 10 24834065 24834065 C T KIAA1217 Intron 0.58 TCGA-LN-A49V-01 10 28229562 28229562 C T ARMC4 Missense_Mutation p.R639Q 0.30 tolerated(0.17) benign(0.013) TCGA-LN-A49V-01 10 45907711 45907711 C A ALOX5 Silent p.I168I 0.37 TCGA-LN-A49V-01 10 5920183 5920183 C T ANKRD16 Silent p.K332K 0.25 TCGA-LN-A49V-01 10 70775906 70775906 C T KIAA1279 Missense_Mutation p.H534Y 0.23 deleterious(0.03) possibly_damaging(0.453) TCGA-LN-A49V-01 10 75531371 75531371 G A SEC24C 3'UTR 0.14 TCGA-LN-A49V-01 10 88422152 88422152 G A OPN4 Missense_Mutation p.R417Q 0.16 tolerated(0.18) benign(0.031) TCGA-LN-A49V-01 10 90122339 90122339 C T RNLS Missense_Mutation p.V224I 0.44 tolerated(1) benign(0.002) TCGA-LN-A49V-01 11 11314686 11314686 C T GALNT18 Missense_Mutation p.V523M 0.36 tolerated(0.22) benign(0.343) TCGA-LN-A49V-01 11 122667713 122667713 G T UBASH3B Silent p.V443V 0.17 TCGA-LN-A49V-01 11 1585172 1585172 C T DUSP8 Silent p.T93T 0.32 TCGA-LN-A49V-01 11 4842865 4842865 G T OR51F2 Missense_Mutation p.D84Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-LN-A49V-01 11 4936276 4936276 A G OR51G2 Silent p.F206F 0.26 TCGA-LN-A49V-01 11 55110876 55110876 T C OR4A16 Missense_Mutation p.M67T 0.14 deleterious_low_confidence(0.03) benign(0.005) TCGA-LN-A49V-01 11 64033845 64033845 G T PLCB3 Missense_Mutation p.A1109S 0.39 deleterious(0) probably_damaging(0.998) TCGA-LN-A49V-01 11 821670 821670 G A PNPLA2 Missense_Mutation p.R77Q 0.15 deleterious(0) probably_damaging(0.998) TCGA-LN-A49V-01 12 107391742 107391742 A G CRY1 Missense_Mutation p.C414R 0.15 deleterious(0) possibly_damaging(0.831) TCGA-LN-A49V-01 12 108127791 108127791 C T PRDM4 3'UTR 0.07 TCGA-LN-A49V-01 12 132335615 132335615 G A MMP17 Silent p.V536V 0.18 TCGA-LN-A49V-01 12 51717865 51717865 C T BIN2 Missense_Mutation p.G8S 0.17 tolerated(0.47) unknown(0) TCGA-LN-A49V-01 12 53459646 53459646 G A SPRYD3 Silent p.V433V 0.59 TCGA-LN-A49V-01 13 53418936 53418936 G A PCDH8 Missense_Mutation p.T991M 0.97 deleterious(0.02) probably_damaging(0.993) TCGA-LN-A49V-01 13 88331374 88331374 C A SLITRK5 3'UTR 0.35 TCGA-LN-A49V-01 14 104488603 104488603 C T TDRD9 Missense_Mutation p.H848Y 0.08 tolerated(0.35) benign(0.008) TCGA-LN-A49V-01 14 105359964 105359964 C T CEP170B Silent p.D1381D 0.14 TCGA-LN-A49V-01 14 20010438 20010438 A C POTEM Intron 0.11 TCGA-LN-A49V-01 14 23016702 23016702 C T TRAC Missense_Mutation p.T86I 0.24 tolerated(0.1) benign(0.355) TCGA-LN-A49V-01 14 65197520 65197520 C T PLEKHG3 Silent p.S134S 0.30 TCGA-LN-A49V-01 14 74974791 74974791 G A LTBP2 Silent p.D1220D 0.13 TCGA-LN-A49V-01 14 94192299 94192299 C T PRIMA1 Intron 0.14 TCGA-LN-A49V-01 15 23445535 23445535 A G AC100757.1 3'Flank 0.66 TCGA-LN-A49V-01 15 41192273 41192273 C T VPS18 Silent p.P419P 0.23 TCGA-LN-A49V-01 15 54305791 54305791 A C UNC13C Missense_Mutation p.S231R 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-LN-A49V-01 15 76019672 76019672 C T ODF3L1 Nonsense_Mutation p.R206* 0.62 TCGA-LN-A49V-01 15 76632669 76632669 G A ISL2 Silent p.T188T 0.26 TCGA-LN-A49V-01 15 88420209 88420209 G A NTRK3 Missense_Mutation p.A826V 0.13 tolerated(0.08) benign(0.147) TCGA-LN-A49V-01 15 90321579 90321579 C G MESP2 3'UTR 0.85 TCGA-LN-A49V-01 16 4714709 4714709 G A MGRN1 Splice_Site p.X188_splice 0.21 TCGA-LN-A49V-01 16 57965772 57965772 C T CNGB1 Silent p.T461T 0.10 TCGA-LN-A49V-01 16 67264528 67264528 A G FHOD1 Missense_Mutation p.I945T 0.76 deleterious(0.03) benign(0.217) TCGA-LN-A49V-01 17 12899085 12899085 G - ELAC2 Frame_Shift_Del p.N582Tfs*23 0.13 TCGA-LN-A49V-01 17 1368846 1368846 C T MYO1C 3'UTR 0.24 TCGA-LN-A49V-01 17 17925098 17925098 C T ATPAF2 Missense_Mutation p.V193I 0.46 tolerated(0.33) benign(0.001) TCGA-LN-A49V-01 17 31618690 31618690 C G ASIC2 Missense_Mutation p.K148N 0.51 tolerated(0.16) possibly_damaging(0.639) TCGA-LN-A49V-01 17 37343091 37343091 C T CACNB1 Missense_Mutation p.R169H 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-LN-A49V-01 17 45750492 45750492 G T KPNB1 Missense_Mutation p.L552F 0.19 tolerated(0.08) benign(0.118) TCGA-LN-A49V-01 17 48597137 48597137 G A MYCBPAP Missense_Mutation p.R345Q 0.14 tolerated(1) benign(0.003) TCGA-LN-A49V-01 17 58289386 58289386 C G USP32 Missense_Mutation p.K726N 0.09 tolerated(0.09) probably_damaging(0.977) TCGA-LN-A49V-01 17 6942095 6942095 C T SLC16A13 Missense_Mutation p.P323L 0.16 deleterious(0) probably_damaging(0.997) TCGA-LN-A49V-01 17 7577094 7577094 G C TP53 Missense_Mutation p.R282G 1.00 deleterious(0.03) benign(0.278) TCGA-LN-A49V-01 19 1632397 1632397 C A TCF3 Missense_Mutation p.E51D 0.29 tolerated(1) benign(0.032) TCGA-LN-A49V-01 19 1823683 1823683 C T REXO1 Silent p.A706A 0.62 TCGA-LN-A49V-01 19 50031852 50031852 C T RCN3 Silent p.S41S 0.95 TCGA-LN-A49V-01 19 58514494 58514494 C G ZNF606 5'UTR 0.40 TCGA-LN-A49V-01 19 6697509 6697509 C T C3 Missense_Mutation p.R881H 0.26 deleterious(0.01) benign(0.053) TCGA-LN-A49V-01 19 9801095 9801095 C T ZNF812 Missense_Mutation p.G362R 0.05 deleterious(0.02) benign(0.003) TCGA-LN-A49V-01 1 109816112 109816112 G A CELSR2 Missense_Mutation p.R2855Q 0.37 deleterious_low_confidence(0.01) benign(0.291) TCGA-LN-A49V-01 1 146736211 146736211 G A CHD1L Missense_Mutation p.R236H 0.07 tolerated(0.47) benign(0.013) TCGA-LN-A49V-01 1 147096223 147096223 G A BCL9 Silent p.T1248T 0.11 TCGA-LN-A49V-01 1 152331355 152331355 G A FLG2 Silent p.T2T 0.10 TCGA-LN-A49V-01 1 153655047 153655047 C T NPR1 Silent p.P415P 0.11 TCGA-LN-A49V-01 1 154473951 154473951 G A SHE Silent p.P184P 0.16 TCGA-LN-A49V-01 1 16054111 16054111 G A PLEKHM2 Missense_Mutation p.R515Q 0.11 tolerated_low_confidence(0.64) benign(0.001) TCGA-LN-A49V-01 1 16902825 16902825 G A NBPF1 Missense_Mutation p.L686F 0.21 tolerated(0.39) probably_damaging(0.996) TCGA-LN-A49V-01 1 200144294 200144294 A G NR5A2 3'UTR 0.38 TCGA-LN-A49V-01 1 201915358 201915358 G A LMOD1 Silent p.D37D 0.23 TCGA-LN-A49V-01 1 202092359 202092359 G A GPR37L1 Missense_Mutation p.G90S 0.28 tolerated(0.9) benign(0.001) TCGA-LN-A49V-01 1 204237354 204237354 C T PLEKHA6 Silent p.A63A 0.16 TCGA-LN-A49V-01 1 212798804 212798804 G A FAM71A Missense_Mutation p.M195I 0.48 tolerated(0.19) benign(0.028) TCGA-LN-A49V-01 1 218519959 218519959 T C TGFB2 5'UTR 0.35 TCGA-LN-A49V-01 1 220368697 220368699 GAT - RAB3GAP2 In_Frame_Del p.L327_S328delinsF 0.11 TCGA-LN-A49V-01 1 228362718 228362718 C T IBA57 Nonsense_Mutation p.R223* 0.07 TCGA-LN-A49V-01 1 228596974 228596974 T G TRIM17 Missense_Mutation p.K261T 0.25 tolerated(0.4) benign(0.143) TCGA-LN-A49V-01 1 26793747 26793747 C T DHDDS Intron 0.29 TCGA-LN-A49V-01 1 46497918 46497918 C T MAST2 Missense_Mutation p.R1086W 0.56 deleterious_low_confidence(0) possibly_damaging(0.893) TCGA-LN-A49V-01 1 52821306 52821306 G A CC2D1B Missense_Mutation p.R727W 0.11 deleterious(0) probably_damaging(0.997) TCGA-LN-A49V-01 1 67724850 67724850 C T IL23R 3'UTR 0.91 TCGA-LN-A49V-01 1 93730253 93730253 T C CCDC18 Intron 0.30 TCGA-LN-A49V-01 20 34505482 34505482 G A PHF20 Silent p.V634V 0.69 TCGA-LN-A49V-01 20 43093921 43093921 C T C20orf62 5'UTR 0.11 TCGA-LN-A49V-01 20 44424079 44424079 G T DNTTIP1 Missense_Mutation p.E123D 0.20 tolerated(0.07) benign(0.214) TCGA-LN-A49V-01 20 61472147 61472147 C T COL9A3 3'UTR 0.35 TCGA-LN-A49V-01 21 46320286 46320286 G A ITGB2 Silent p.N282N 0.10 TCGA-LN-A49V-01 21 46896265 46896283 GGCGCGGCCCTAAAACCCA - COL18A1 Frame_Shift_Del p.A448Sfs*35 0.36 TCGA-LN-A49V-01 22 32992674 32992674 C T SYN3 Missense_Mutation p.A254T 0.07 deleterious(0.01) unknown(0) TCGA-LN-A49V-01 22 41568668 41568668 G A EP300 Splice_Site p.X1539_splice 0.90 TCGA-LN-A49V-01 22 43600129 43600129 G A SCUBE1 Silent p.F947F 0.37 TCGA-LN-A49V-01 2 101549417 101549417 A G NPAS2 Missense_Mutation p.K76R 0.62 deleterious(0) possibly_damaging(0.587) TCGA-LN-A49V-01 2 10863041 10863041 G A ATP6V1C2 Missense_Mutation p.M22I 0.18 deleterious(0.01) benign(0.004) TCGA-LN-A49V-01 2 114492234 114492234 G A SLC35F5 Silent p.I283I 0.10 TCGA-LN-A49V-01 2 198436723 198436723 C T RFTN2 3'UTR 0.14 TCGA-LN-A49V-01 2 220364857 220364857 C G GMPPA Missense_Mutation p.P19A 0.25 deleterious(0) probably_damaging(1) TCGA-LN-A49V-01 2 27892149 27892149 G A SLC4A1AP Missense_Mutation p.V414M 0.97 tolerated(0.11) benign(0.285) TCGA-LN-A49V-01 2 63091905 63091905 A T EHBP1 Missense_Mutation p.D301V 0.89 deleterious(0.01) benign(0.147) TCGA-LN-A49V-01 2 71827929 71827929 C A DYSF Nonsense_Mutation p.S1285* 0.19 TCGA-LN-A49V-01 2 88333726 88333726 G A KRCC1 5'UTR 0.55 TCGA-LN-A49V-01 3 102196570 102196570 G T ZPLD1 3'UTR 0.67 TCGA-LN-A49V-01 3 121724090 121724090 C T ILDR1 Splice_Site p.X127_splice 0.09 TCGA-LN-A49V-01 3 124281861 124281861 G C KALRN Missense_Mutation p.V74L 0.37 tolerated(0.14) benign(0.04) TCGA-LN-A49V-01 3 128182859 128182859 C T DNAJB8 5'UTR 0.46 TCGA-LN-A49V-01 3 184086034 184086034 C T POLR2H Silent p.F135F 0.28 TCGA-LN-A49V-01 3 184094123 184094123 C T THPO 5'UTR 0.18 TCGA-LN-A49V-01 3 38296471 38296471 G A OXSR1 3'UTR 0.14 TCGA-LN-A49V-01 3 49201104 49201104 C T CCDC71 Missense_Mutation p.E180K 0.23 deleterious(0) probably_damaging(0.997) TCGA-LN-A49V-01 4 106162811 106162811 C T TET2 Intron 0.30 TCGA-LN-A49V-01 4 114276595 114276595 G A ANK2 Missense_Mutation p.R2274H 0.92 benign(0.001) TCGA-LN-A49V-01 4 138441619 138441619 C T PCDH18 3'UTR 0.33 TCGA-LN-A49V-01 4 183652249 183652249 T A TENM3 Missense_Mutation p.F975Y 0.40 tolerated(1) possibly_damaging(0.483) TCGA-LN-A49V-01 4 20543179 20543179 C G SLIT2 Missense_Mutation p.P694A 0.20 deleterious(0) probably_damaging(0.998) TCGA-LN-A49V-01 4 5981916 5981916 C T C4orf50 Silent p.E525E 0.17 TCGA-LN-A49V-01 4 6578408 6578408 G A MAN2B2 Missense_Mutation p.R81Q 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A49V-01 4 68338319 68338319 T C CENPC 3'UTR 0.80 TCGA-LN-A49V-01 4 71554228 71554228 C T UTP3 5'UTR 0.83 TCGA-LN-A49V-01 4 74283887 74283887 C T ALB Missense_Mutation p.S504F 0.15 deleterious(0.01) probably_damaging(0.994) TCGA-LN-A49V-01 5 118556217 118556217 G C DMXL1 Silent p.L2667L 0.21 TCGA-LN-A49V-01 5 140554656 140554656 A G PCDHB7 Missense_Mutation p.Y747C 0.93 deleterious_low_confidence(0.01) possibly_damaging(0.666) TCGA-LN-A49V-01 5 140957145 140957145 C T DIAPH1 Missense_Mutation p.V393I 0.97 unknown(0) TCGA-LN-A49V-01 5 147499615 147499615 T A SPINK5 Missense_Mutation p.L786H 0.29 deleterious(0) probably_damaging(1) TCGA-LN-A49V-01 5 148876034 148876034 G A CSNK1A1 3'Flank 0.36 TCGA-LN-A49V-01 5 150031078 150031078 G A SYNPO 3'UTR 0.07 TCGA-LN-A49V-01 5 162887691 162887691 C T HMMR 5'UTR 0.14 TCGA-LN-A49V-01 5 6755014 6755014 C A PAPD7 Missense_Mutation p.H529N 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.526) TCGA-LN-A49V-01 5 9036883 9036883 T C SEMA5A 3'UTR 0.31 TCGA-LN-A49V-01 6 107096922 107096922 T G QRSL1 Missense_Mutation p.F135V 0.85 deleterious(0.01) possibly_damaging(0.904) TCGA-LN-A49V-01 6 110541037 110541037 C T CDC40 Silent p.S435S 0.12 TCGA-LN-A49V-01 6 129618820 129618836 CCATTGCCAGGCTGGGA - LAMA2 Splice_Site p.X953_splice 0.12 TCGA-LN-A49V-01 6 151673538 151673538 G A AKAP12 Missense_Mutation p.V1338I 0.24 tolerated(0.26) benign(0.197) TCGA-LN-A49V-01 6 151687546 151687546 C G ZBTB2 Missense_Mutation p.E219Q 0.25 tolerated(0.29) probably_damaging(0.968) TCGA-LN-A49V-01 6 151742424 151742424 A T RMND1 Silent p.S345S 0.31 TCGA-LN-A49V-01 6 30671587 30671587 C T MDC1 Silent p.V1791V 0.32 TCGA-LN-A49V-01 6 76728472 76728472 G T IMPG1 Missense_Mutation p.P257Q 0.53 deleterious(0.05) probably_damaging(0.954) TCGA-LN-A49V-01 7 150918758 150918758 C T ABCF2 Missense_Mutation p.R276H 0.16 tolerated(0.22) benign(0.03) TCGA-LN-A49V-01 7 158695219 158695219 T C WDR60 Silent p.I430I 0.14 TCGA-LN-A49V-01 7 23053671 23053671 G C FAM126A 5'UTR 0.35 TCGA-LN-A49V-01 7 73256371 73256371 G A WBSCR27 Missense_Mutation p.R34C 0.44 tolerated(0.07) benign(0.009) TCGA-LN-A49V-01 7 73790244 73790244 G A CLIP2 Missense_Mutation p.V505M 0.33 deleterious(0) possibly_damaging(0.726) TCGA-LN-A49V-01 7 93125259 93125259 G A CALCR 5'UTR 0.59 TCGA-LN-A49V-01 7 99725388 99725388 G T MBLAC1 Missense_Mutation p.G124W 0.22 deleterious(0) probably_damaging(0.994) TCGA-LN-A49V-01 8 105521276 105521276 G A LRP12 Nonsense_Mutation p.R55* 0.05 TCGA-LN-A49V-01 8 109252218 109252218 G A EIF3E Missense_Mutation p.P98S 0.19 tolerated(0.11) benign(0.111) TCGA-LN-A49V-01 8 135614876 135614878 CTT - ZFAT In_Frame_Del p.K362del 0.12 TCGA-LN-A49V-01 8 144399896 144399897 - C TOP1MT Frame_Shift_Ins p.R443Afs*9 0.38 TCGA-LN-A49V-01 8 144789923 144789923 G A CCDC166 Silent p.R119R 0.29 TCGA-LN-A49V-01 8 145659610 145659610 C T TONSL Silent p.S1046S 0.05 TCGA-LN-A49V-01 8 169312 169312 C A RPL23AP53 RNA 0.33 TCGA-LN-A49V-01 8 39581282 39581282 A C ADAM18 Missense_Mutation p.E678A 0.05 tolerated(0.35) benign(0.003) TCGA-LN-A49V-01 8 41573341 41573341 T C ANK1 Silent p.A510A 0.14 TCGA-LN-A49V-01 8 43152432 43152432 G A POTEA RNA 0.12 TCGA-LN-A49V-01 8 61121437 61121437 T C CA8 Silent p.A260A 0.09 TCGA-LN-A49V-01 8 70541903 70541903 C T SULF1 Missense_Mutation p.P758L 0.25 deleterious(0.01) probably_damaging(0.951) TCGA-LN-A49V-01 8 8233763 8233763 C T SGK223 Missense_Mutation p.R719Q 0.33 probably_damaging(0.978) TCGA-LN-A49V-01 8 93017367 93017367 G A RUNX1T1 Silent p.N250N 0.62 TCGA-LN-A49V-01 9 130684122 130684122 C T PIP5KL1 3'UTR 0.10 TCGA-LN-A49V-01 9 134321903 134321903 C G PRRC2B Silent p.S243S 0.12 TCGA-LN-A49V-01 9 138662861 138662861 G A KCNT1 Missense_Mutation p.R643Q 0.08 tolerated(1) benign(0) TCGA-LN-A49V-01 9 139399766 139399766 A G NOTCH1 Missense_Mutation p.C1528R 0.74 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A49V-01 9 139839909 139839909 A G C8G Missense_Mutation p.Q46R 0.19 tolerated(0.11) benign(0.01) TCGA-LN-A49V-01 9 71439055 71439055 C T PIP5K1B Intron 0.54 TCGA-LN-A49V-01 9 86294848 86294848 T C UBQLN1 Missense_Mutation p.M185V 0.71 deleterious(0.04) possibly_damaging(0.448) TCGA-LN-A49V-01 9 88292466 88292466 G T AGTPBP1 Silent p.T107T 0.17 TCGA-LN-A49V-01 X 122623557 122623557 G A GRIA3 3'UTR 0.70 TCGA-LN-A49V-01 X 151138169 151138169 C A GABRE Missense_Mutation p.S105I 0.83 deleterious(0) probably_damaging(0.995) TCGA-LN-A49V-01 X 19031890 19031890 G - GPR64 Frame_Shift_Del p.P338Hfs*4 0.09 TCGA-LN-A49V-01 X 26213137 26213137 G T MAGEB6 Nonsense_Mutation p.E392* 0.14 TCGA-LN-A49V-01 X 41198321 41198321 C T DDX3X Nonsense_Mutation p.R46* 0.42 TCGA-LN-A49W-01 10 61552831 61552831 G C CCDC6 Missense_Mutation p.F423L 0.07 deleterious(0.01) possibly_damaging(0.899) TCGA-LN-A49W-01 10 69832845 69832845 T A HERC4 Silent p.A7A 0.13 TCGA-LN-A49W-01 11 64435121 64435121 G A NRXN2 Missense_Mutation p.R467C 0.16 deleterious(0) benign(0.025) TCGA-LN-A49W-01 11 68030003 68030003 T C C11orf24 Missense_Mutation p.M154V 0.24 tolerated(0.45) unknown(0) TCGA-LN-A49W-01 11 71949794 71949794 A G INPPL1 3'UTR 0.25 TCGA-LN-A49W-01 12 106461007 106461007 C T NUAK1 Missense_Mutation p.R520Q 0.19 tolerated(0.06) benign(0.32) TCGA-LN-A49W-01 12 113334573 113334573 G A RPH3A Silent p.V691V 0.38 TCGA-LN-A49W-01 12 14923843 14923844 - G HIST4H4 Frame_Shift_Ins p.L59Pfs*11 0.10 TCGA-LN-A49W-01 12 2676738 2676738 C T CACNA1C Missense_Mutation p.T558M 0.33 tolerated(0.07) benign(0.267) TCGA-LN-A49W-01 12 45568029 45568029 T C PLEKHA8P1 RNA 0.09 TCGA-LN-A49W-01 12 46752700 46752700 T A SLC38A2 3'UTR 0.23 TCGA-LN-A49W-01 12 52882150 52882150 G T KRT6A Silent p.I462I 0.16 TCGA-LN-A49W-01 12 54963024 54963024 C T PDE1B Missense_Mutation p.S95L 0.14 tolerated(0.25) possibly_damaging(0.532) TCGA-LN-A49W-01 12 69973085 69973085 G A FRS2 3'UTR 0.14 TCGA-LN-A49W-01 12 78605103 78605103 A G NAV3 3'Flank 0.23 TCGA-LN-A49W-01 12 8765388 8765388 C T AICDA 5'UTR 0.21 TCGA-LN-A49W-01 12 88380170 88380170 T G C12orf50 Missense_Mutation p.K281Q 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A49W-01 12 97051988 97051988 G C C12orf55 Splice_Site p.X1775_splice 0.31 TCGA-LN-A49W-01 13 25021304 25021304 C T PARP4 Silent p.R1045R 0.13 TCGA-LN-A49W-01 14 106391060 106391060 G A KIAA0125 3'Flank 0.33 TCGA-LN-A49W-01 14 20502224 20502224 G A OR4K13 Nonsense_Mutation p.R232* 0.35 TCGA-LN-A49W-01 14 35073350 35073350 A T SNX6 Intron 0.28 TCGA-LN-A49W-01 14 39777653 39777653 A T CTAGE5 Missense_Mutation p.E357V 0.35 deleterious(0.05) possibly_damaging(0.511) TCGA-LN-A49W-01 15 20644266 20644266 T C HERC2P3 RNA 0.08 TCGA-LN-A49W-01 15 42703106 42703106 A G CAPN3 Missense_Mutation p.Y763C 0.23 deleterious(0.01) probably_damaging(0.992) TCGA-LN-A49W-01 15 75641271 75641271 C T NEIL1 Silent p.L9L 0.05 TCGA-LN-A49W-01 15 89074239 89074239 G A DET1 Missense_Mutation p.S244F 0.33 deleterious(0) probably_damaging(1) TCGA-LN-A49W-01 16 46534659 46534659 T A ANKRD26P1 RNA 0.21 TCGA-LN-A49W-01 16 4793092 4793093 - A C16orf71 Frame_Shift_Ins p.E279Rfs*17 0.31 TCGA-LN-A49W-01 16 57504037 57504038 - A POLR2C Frame_Shift_Ins p.W203Mfs*5 0.24 TCGA-LN-A49W-01 16 64981513 64981513 T C CDH11 Missense_Mutation p.D795G 0.26 deleterious_low_confidence(0.01) benign(0.194) TCGA-LN-A49W-01 16 77401444 77401444 A G ADAMTS18 Silent p.Y224Y 0.15 TCGA-LN-A49W-01 17 37076595 37076595 G - LASP1 3'UTR 0.22 TCGA-LN-A49W-01 17 38245543 38245543 G A THRA Missense_Mutation p.R356H 0.09 tolerated(0.1) possibly_damaging(0.858) TCGA-LN-A49W-01 17 54450102 54450102 G C ANKFN1 Missense_Mutation p.G236R 0.36 tolerated(0.07) benign(0.001) TCGA-LN-A49W-01 17 56434566 56434566 T C RNF43 Intron 0.26 TCGA-LN-A49W-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.35 deleterious(0) probably_damaging(0.998) TCGA-LN-A49W-01 18 11888683 11888683 G C MPPE1 Missense_Mutation p.S185C 0.22 deleterious(0) probably_damaging(0.971) TCGA-LN-A49W-01 18 13030462 13030462 A G CEP192 Splice_Site p.X464_splice 0.14 TCGA-LN-A49W-01 18 2554941 2554941 T C METTL4 Missense_Mutation p.S186G 0.11 tolerated(0.25) benign(0.003) TCGA-LN-A49W-01 18 44063558 44063558 G A LOXHD1 Silent p.Y1000Y 0.20 TCGA-LN-A49W-01 19 10403909 10403909 G A ICAM5 Silent p.T484T 0.16 TCGA-LN-A49W-01 19 17716035 17716035 G C UNC13A 3'UTR 0.13 TCGA-LN-A49W-01 19 2334616 2334616 G T AC004410.3 3'Flank 0.27 TCGA-LN-A49W-01 19 34710734 34710735 - T LSM14A Frame_Shift_Ins p.D364* 0.10 TCGA-LN-A49W-01 19 37975902 37975902 C T ZNF570 Missense_Mutation p.H460Y 0.13 deleterious(0) probably_damaging(0.996) TCGA-LN-A49W-01 19 5661536 5661536 C T SAFB Missense_Mutation p.R624C 0.14 tolerated(0.06) unknown(0) TCGA-LN-A49W-01 1 120512369 120512369 T A NOTCH2 Splice_Site p.X292_splice 0.08 TCGA-LN-A49W-01 1 12954510 12954510 T A PRAMEF10 Missense_Mutation p.D258V 0.12 deleterious(0) benign(0.219) TCGA-LN-A49W-01 1 152187118 152187118 G A HRNR Silent p.G2329G 0.16 TCGA-LN-A49W-01 1 169497273 169497273 T C F5 Missense_Mutation p.R1827G 0.09 deleterious(0) probably_damaging(0.922) TCGA-LN-A49W-01 1 203453189 203453189 C A PRELP Missense_Mutation p.L293M 0.44 deleterious(0.04) possibly_damaging(0.897) TCGA-LN-A49W-01 1 205042860 205042860 G T CNTN2 Silent p.A1030A 0.29 TCGA-LN-A49W-01 1 211093142 211093142 C G KCNH1 Silent p.G434G 0.12 TCGA-LN-A49W-01 1 240255581 240255581 G T FMN2 Missense_Mutation p.G58C 0.33 unknown(0) TCGA-LN-A49W-01 1 33138069 33138069 A T RBBP4 Missense_Mutation p.N329Y 0.15 deleterious(0.03) benign(0.064) TCGA-LN-A49W-01 1 44063676 44063676 G C PTPRF Missense_Mutation p.G691R 0.38 deleterious(0) benign(0.11) TCGA-LN-A49W-01 1 52253066 52253066 T C OSBPL9 Missense_Mutation p.I691T 0.35 deleterious(0) probably_damaging(0.998) TCGA-LN-A49W-01 1 6285033 6285033 T C ICMT 3'UTR 0.26 TCGA-LN-A49W-01 1 7827834 7827834 T C CAMTA1 3'UTR 0.27 TCGA-LN-A49W-01 1 97658623 97658623 A C DPYD Splice_Site p.X874_splice 0.11 TCGA-LN-A49W-01 20 30784583 30784583 G A PLAGL2 Missense_Mutation p.A388V 0.19 tolerated(0.27) benign(0.016) TCGA-LN-A49W-01 20 33330205 33330205 T C NCOA6 Silent p.Q1285Q 0.14 TCGA-LN-A49W-01 20 34536334 34536334 G A PHF20 3'UTR 0.14 TCGA-LN-A49W-01 20 34538089 34538089 T C PHF20 3'UTR 0.21 TCGA-LN-A49W-01 20 35221020 35221020 G A TGIF2 3'UTR 0.30 TCGA-LN-A49W-01 20 44573647 44573647 C T PCIF1 Silent p.I382I 0.16 TCGA-LN-A49W-01 20 55072460 55072460 A G GCNT7 5'UTR 0.24 TCGA-LN-A49W-01 21 40567638 40567638 T C BRWD1 Intron 0.13 TCGA-LN-A49W-01 22 22842160 22842160 C G ZNF280B Missense_Mutation p.V522L 0.11 tolerated(0.06) benign(0.216) TCGA-LN-A49W-01 22 24483514 24483514 G A CABIN1 Missense_Mutation p.V1125I 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-LN-A49W-01 22 50944766 50944766 G T LMF2 Silent p.A181A 0.21 TCGA-LN-A49W-01 2 101565927 101565927 C T NPAS2 Missense_Mutation p.R195C 0.17 deleterious(0) probably_damaging(0.964) TCGA-LN-A49W-01 2 125192188 125192188 C A CNTNAP5 Missense_Mutation p.F219L 0.20 tolerated(1) benign(0.075) TCGA-LN-A49W-01 2 131520725 131520725 C T AMER3 Silent p.S360S 0.14 TCGA-LN-A49W-01 2 136566569 136566569 C T LCT Silent p.Q1116Q 0.19 TCGA-LN-A49W-01 2 145182382 145182382 G A ZEB2 Silent p.T128T 0.26 TCGA-LN-A49W-01 2 16085729 16085729 G A MYCN Missense_Mutation p.R302H 0.24 tolerated(0.27) possibly_damaging(0.703) TCGA-LN-A49W-01 2 161030646 161030646 T C ITGB6 Missense_Mutation p.I200V 0.22 tolerated(0.55) benign(0.009) TCGA-LN-A49W-01 2 179554284 179554284 T C TTN Missense_Mutation p.I10629V 0.15 TCGA-LN-A49W-01 2 203152394 203152394 A G NOP58 Missense_Mutation p.Y149C 0.35 deleterious(0) probably_damaging(0.954) TCGA-LN-A49W-01 2 240036937 240036937 G A HDAC4 Missense_Mutation p.R530C 0.13 tolerated(0.08) probably_damaging(0.999) TCGA-LN-A49W-01 2 27280243 27280243 G A AGBL5 Silent p.G536G 0.20 TCGA-LN-A49W-01 2 37516571 37516571 T C PRKD3 Silent p.V215V 0.17 TCGA-LN-A49W-01 2 69702234 69702234 T C AAK1 3'UTR 0.35 TCGA-LN-A49W-01 3 111603832 111603832 A G PHLDB2 Missense_Mutation p.N303S 0.15 tolerated(0.17) benign(0.003) TCGA-LN-A49W-01 3 124947627 124947627 G T ZNF148 3'UTR 0.27 TCGA-LN-A49W-01 3 130732925 130732925 A G ASTE1 Silent p.H672H 0.31 TCGA-LN-A49W-01 3 137991875 137991875 C T ARMC8 Silent p.L502L 0.23 TCGA-LN-A49W-01 3 173997346 173997346 G A NLGN1 Missense_Mutation p.G519S 0.28 tolerated(0.11) probably_damaging(0.997) TCGA-LN-A49W-01 3 195013077 195013077 C T ACAP2 Missense_Mutation p.E624K 0.14 tolerated(0.08) benign(0.039) TCGA-LN-A49W-01 3 45989477 45989477 G T CXCR6 3'Flank 0.24 TCGA-LN-A49W-01 3 56703801 56703801 T A FAM208A Missense_Mutation p.Y221F 0.40 deleterious(0.04) probably_damaging(0.944) TCGA-LN-A49W-01 3 89529574 89529574 T C EPHA3 3'UTR 0.29 TCGA-LN-A49W-01 4 105412091 105412091 G C CXXC4 Missense_Mutation p.S290C 0.08 deleterious(0.01) possibly_damaging(0.629) TCGA-LN-A49W-01 4 134073819 134073819 C A PCDH10 Missense_Mutation p.P842T 0.22 deleterious(0) possibly_damaging(0.701) TCGA-LN-A49W-01 4 166924650 166924650 G T TLL1 Missense_Mutation p.G247V 0.18 deleterious(0) probably_damaging(0.999) TCGA-LN-A49W-01 4 25019636 25019636 G T LGI2 Missense_Mutation p.S210R 0.21 tolerated(0.22) possibly_damaging(0.701) TCGA-LN-A49W-01 4 3418649 3418649 C A RGS12 Missense_Mutation p.L813I 0.15 deleterious(0) possibly_damaging(0.822) TCGA-LN-A49W-01 4 71895846 71895846 A G DCK 3'UTR 0.17 TCGA-LN-A49W-01 4 96070005 96070005 T G BMPR1B Missense_Mutation p.Y425D 0.12 deleterious(0) probably_damaging(0.992) TCGA-LN-A49W-01 5 100222259 100222259 C T ST8SIA4 Silent p.V97V 0.21 TCGA-LN-A49W-01 5 131008447 131008447 T C FNIP1 Missense_Mutation p.M564V 0.26 tolerated(0.13) probably_damaging(0.968) TCGA-LN-A49W-01 5 134190864 134190864 C T C5orf24 Missense_Mutation p.R92W 0.16 deleterious(0) probably_damaging(0.997) TCGA-LN-A49W-01 5 140555274 140555274 A T PCDHB7 3'UTR 0.29 TCGA-LN-A49W-01 5 140580848 140580848 G T PCDHB11 Missense_Mutation p.A501S 0.25 tolerated_low_confidence(0.23) benign(0.092) TCGA-LN-A49W-01 5 179545653 179545653 C T RASGEF1C Missense_Mutation p.G347R 0.10 deleterious(0.05) benign(0.393) TCGA-LN-A49W-01 5 61826585 61826585 A G IPO11 Missense_Mutation p.I728V 0.34 tolerated(0.15) benign(0.002) TCGA-LN-A49W-01 5 94022349 94022349 G C ANKRD32 Missense_Mutation p.E683Q 0.13 deleterious(0) probably_damaging(0.998) TCGA-LN-A49W-01 6 123576225 123576225 C A TRDN Splice_Site p.X651_splice 0.13 TCGA-LN-A49W-01 6 28547054 28547054 T A SCAND3 Missense_Mutation p.D188V 0.33 deleterious_low_confidence(0) benign(0.03) TCGA-LN-A49W-01 6 34574629 34574629 C T C6orf106 Silent p.T188T 0.07 TCGA-LN-A49W-01 6 36462284 36462284 G A STK38 3'UTR 0.20 TCGA-LN-A49W-01 6 99374651 99374651 A G FBXL4 Missense_Mutation p.S72P 0.15 deleterious(0) probably_damaging(0.997) TCGA-LN-A49W-01 7 133994143 133994143 T C SLC35B4 Missense_Mutation p.R56G 0.25 tolerated(0.25) benign(0.219) TCGA-LN-A49W-01 7 38766586 38766586 C G VPS41 Missense_Mutation p.A803P 0.22 tolerated(0.3) benign(0.002) TCGA-LN-A49W-01 7 48308594 48308594 C A ABCA13 Missense_Mutation p.P675T 0.27 probably_damaging(0.989) TCGA-LN-A49W-01 7 55273092 55273092 C T EGFR Missense_Mutation p.L1139F 0.26 deleterious(0) probably_damaging(0.999) TCGA-LN-A49W-01 8 110657603 110657603 G A SYBU Intron 0.25 TCGA-LN-A49W-01 8 117887052 117887052 A G RAD21 5'UTR 0.45 TCGA-LN-A49W-01 8 120430329 120430329 G C NOV Silent p.G114G 0.06 TCGA-LN-A49W-01 8 133595957 133595957 C A LRRC6 Nonsense_Mutation p.E404* 0.14 TCGA-LN-A49W-01 8 145641663 145641663 C T SLC39A4 Intron 0.47 TCGA-LN-A49W-01 8 17532707 17532707 G A MTUS1 Missense_Mutation p.R965W 0.08 deleterious(0) probably_damaging(0.951) TCGA-LN-A49W-01 8 86126557 86126557 T C E2F5 3'UTR 0.39 TCGA-LN-A49W-01 8 95751917 95751917 A G DPY19L4 Silent p.G170G 0.30 TCGA-LN-A49W-01 8 9592385 9592385 A G TNKS Missense_Mutation p.D775G 0.13 deleterious(0) probably_damaging(0.998) TCGA-LN-A49W-01 9 72962880 72962880 A G SMC5 Missense_Mutation p.I939V 0.29 deleterious(0.05) probably_damaging(0.923) TCGA-LN-A49W-01 X 118257580 118257580 G A KIAA1210 Missense_Mutation p.S149F 0.25 deleterious(0) benign(0.311) TCGA-LN-A49W-01 X 47424691 47424691 C A ARAF Missense_Mutation p.Q167K 0.15 tolerated(0.32) benign(0.014) TCGA-LN-A49W-01 X 99662990 99662990 C T PCDH19 Silent p.S202S 0.21 TCGA-LN-A49X-01 10 103354421 103354421 G C DPCD Missense_Mutation p.R24T 0.15 deleterious(0.04) probably_damaging(0.928) TCGA-LN-A49X-01 10 120897154 120897154 T A SFXN4 3'Flank 0.12 TCGA-LN-A49X-01 10 27317825 27317825 C A ANKRD26 Missense_Mutation p.D1310Y 0.16 tolerated(0.3) benign(0.143) TCGA-LN-A49X-01 10 52066168 52066168 A T SGMS1 3'UTR 0.26 TCGA-LN-A49X-01 10 98144480 98144480 G A TLL2 Silent p.P686P 0.13 TCGA-LN-A49X-01 10 99509265 99509265 C T ZFYVE27 Silent p.L196L 0.14 TCGA-LN-A49X-01 11 134253770 134253770 G A B3GAT1 Missense_Mutation p.T142M 0.23 deleterious(0) probably_damaging(1) TCGA-LN-A49X-01 11 5664786 5664786 C T TRIM34 Silent p.D438D 0.05 TCGA-LN-A49X-01 11 57948287 57948287 C T OR9Q1 3'UTR 0.16 TCGA-LN-A49X-01 11 66063542 66063542 C T TMEM151A 3'UTR 0.06 TCGA-LN-A49X-01 11 67225884 67225884 C T CABP4 Missense_Mutation p.R232W 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-LN-A49X-01 12 110930988 110930988 T C VPS29 Missense_Mutation p.I86V 0.31 tolerated(0.09) benign(0.014) TCGA-LN-A49X-01 12 132512560 132512560 A G EP400 Splice_Site p.X1704_splice 0.08 TCGA-LN-A49X-01 12 50232768 50232768 G T BCDIN3D Missense_Mutation p.L89I 0.25 deleterious(0.02) benign(0.242) TCGA-LN-A49X-01 12 56143474 56143474 G C GDF11 Missense_Mutation p.Q344H 0.13 deleterious(0) possibly_damaging(0.871) TCGA-LN-A49X-01 12 80647261 80647261 A G OTOGL Missense_Mutation p.N425S 0.25 deleterious(0) probably_damaging(0.998) TCGA-LN-A49X-01 13 100615424 100615424 T A ZIC5 3'UTR 0.11 TCGA-LN-A49X-01 13 102568817 102568817 C G FGF14 Intron 0.12 TCGA-LN-A49X-01 13 32365960 32365960 G A RXFP2 Missense_Mutation p.R388Q 0.14 tolerated(1) benign(0.005) TCGA-LN-A49X-01 13 73651613 73651613 G A KLF5 3'UTR 0.21 TCGA-LN-A49X-01 14 22392776 22392776 C G TRAV14DV4 Missense_Mutation p.S100C 0.11 TCGA-LN-A49X-01 14 22459103 22459103 C T TRAV16 Silent p.G85G 0.17 TCGA-LN-A49X-01 14 38724771 38724771 C A CLEC14A Nonsense_Mutation p.E153* 0.10 TCGA-LN-A49X-01 14 69805402 69805402 T C GALNT16 Silent p.S334S 0.13 TCGA-LN-A49X-01 15 63893968 63893968 C G FBXL22 3'UTR 0.12 TCGA-LN-A49X-01 16 30764831 30764831 C T PHKG2 Missense_Mutation p.S170L 0.16 deleterious(0) possibly_damaging(0.874) TCGA-LN-A49X-01 16 31414942 31414942 C T ITGAD Missense_Mutation p.T227M 0.09 deleterious(0) probably_damaging(1) TCGA-LN-A49X-01 16 68023258 68023258 G A DPEP2 Silent p.I346I 0.16 TCGA-LN-A49X-01 16 87985117 87985117 A G BANP 5'UTR 0.07 TCGA-LN-A49X-01 17 2585957 2585957 A G PAFAH1B1 3'UTR 0.23 TCGA-LN-A49X-01 17 34923570 34923570 C T GGNBP2 Missense_Mutation p.S199L 0.13 tolerated(0.08) benign(0.24) TCGA-LN-A49X-01 17 39740052 39740058 TCTGCCA - KRT14 Frame_Shift_Del p.M294Rfs*18 0.15 TCGA-LN-A49X-01 17 73662528 73662528 G A RECQL5 Missense_Mutation p.A37V 0.26 tolerated(0.25) probably_damaging(0.954) TCGA-LN-A49X-01 17 7578461 7578461 C A TP53 Missense_Mutation p.V157F 0.30 deleterious(0) probably_damaging(0.997) TCGA-LN-A49X-01 17 7809966 7809966 G A CHD3 Missense_Mutation p.R1544H 0.14 possibly_damaging(0.812) TCGA-LN-A49X-01 17 79477568 79477568 G T ACTG1 3'UTR 0.21 TCGA-LN-A49X-01 17 8733047 8733047 A T PIK3R6 Missense_Mutation p.L289M 0.13 deleterious(0.03) probably_damaging(1) TCGA-LN-A49X-01 18 21125043 21125043 C T NPC1 Missense_Mutation p.E610K 0.05 deleterious(0) possibly_damaging(0.858) TCGA-LN-A49X-01 18 61390626 61390626 C T SERPINB11 Missense_Mutation p.S391F 0.14 deleterious(0) probably_damaging(0.998) TCGA-LN-A49X-01 19 15296491 15296491 C T NOTCH3 Splice_Site p.X651_splice 0.24 TCGA-LN-A49X-01 19 40580618 40580618 T C ZNF780A Silent p.K578K 0.06 TCGA-LN-A49X-01 1 100613525 100613525 G T TRMT13 Missense_Mutation p.R298L 0.14 deleterious(0.01) possibly_damaging(0.803) TCGA-LN-A49X-01 1 109867695 109867695 C T SORT1 Missense_Mutation p.G554S 0.10 deleterious(0) probably_damaging(1) TCGA-LN-A49X-01 1 117602959 117602959 A G TTF2 5'UTR 0.14 TCGA-LN-A49X-01 1 120483302 120483302 G A NOTCH2 Missense_Mutation p.S1020F 0.15 deleterious(0.01) benign(0.098) TCGA-LN-A49X-01 1 149398805 149398805 C G HIST2H3PS2 3'Flank 0.14 TCGA-LN-A49X-01 1 152277667 152277667 G A FLG Missense_Mutation p.S3232F 0.14 unknown(0) TCGA-LN-A49X-01 1 154574789 154574789 T C ADAR Missense_Mutation p.H110R 0.18 tolerated(0.45) benign(0.002) TCGA-LN-A49X-01 1 180166101 180166101 C T QSOX1 Silent p.L725L 0.17 TCGA-LN-A49X-01 1 200828539 200828539 T C CAMSAP2 3'UTR 0.17 TCGA-LN-A49X-01 1 205899089 205899089 C G SLC26A9 Silent p.L216L 0.11 TCGA-LN-A49X-01 1 230822767 230822767 A G COG2 Silent p.Q489Q 0.11 TCGA-LN-A49X-01 1 49511430 49511430 C T AGBL4 Silent p.P140P 0.07 TCGA-LN-A49X-01 20 19702169 19702169 G C SLC24A3 3'UTR 0.11 TCGA-LN-A49X-01 20 37153456 37153456 A G RALGAPB Missense_Mutation p.N552S 0.07 tolerated(0.89) benign(0) TCGA-LN-A49X-01 20 43115335 43115335 A G TTPAL Missense_Mutation p.I247V 0.09 tolerated(0.05) benign(0.032) TCGA-LN-A49X-01 20 50769335 50769335 C T ZFP64 Missense_Mutation p.D466N 0.33 tolerated(0.16) benign(0.02) TCGA-LN-A49X-01 20 52184518 52184518 T C ZNF217 3'UTR 0.22 TCGA-LN-A49X-01 22 28292539 28292539 C T PITPNB Splice_Site p.X124_splice 0.27 TCGA-LN-A49X-01 22 50280738 50280739 - C ZBED4 Frame_Shift_Ins p.L1144Pfs*12 0.19 TCGA-LN-A49X-01 2 167056175 167056175 G A SCN9A Silent p.Y1647Y 0.10 TCGA-LN-A49X-01 2 179611634 179611634 C T TTN Intron 0.14 TCGA-LN-A49X-01 2 233245015 233245015 G A ALPP Nonsense_Mutation p.W259* 0.11 TCGA-LN-A49X-01 2 241969711 241969711 A T SNED1 Missense_Mutation p.N75I 0.11 deleterious(0) probably_damaging(0.999) TCGA-LN-A49X-01 2 242573291 242573292 - C THAP4 Frame_Shift_Ins p.A94Gfs*59 0.20 TCGA-LN-A49X-01 2 48030583 48030583 A G MSH6 Missense_Mutation p.Y1066C 0.17 deleterious(0) possibly_damaging(0.907) TCGA-LN-A49X-01 2 9517087 9517087 C T ASAP2 Silent p.T599T 0.33 TCGA-LN-A49X-01 2 98409874 98409874 T C TMEM131 Missense_Mutation p.I1177V 0.09 tolerated(0.12) benign(0.004) TCGA-LN-A49X-01 3 125509324 125509324 A G MIR548I1 RNA 0.07 TCGA-LN-A49X-01 3 136141859 136141859 G C STAG1 Missense_Mutation p.Q560E 0.06 tolerated(0.06) benign(0.076) TCGA-LN-A49X-01 3 194147972 194147972 T C ATP13A3 Missense_Mutation p.N986S 0.13 deleterious(0.05) benign(0.418) TCGA-LN-A49X-01 3 195615459 195615459 T C TNK2 Missense_Mutation p.M64V 0.12 deleterious(0) possibly_damaging(0.882) TCGA-LN-A49X-01 3 49148789 49148789 G C USP19 Missense_Mutation p.P1074R 0.16 deleterious(0.01) possibly_damaging(0.493) TCGA-LN-A49X-01 4 140432140 140432140 T A SETD7 3'UTR 0.21 TCGA-LN-A49X-01 4 146056332 146056332 A G OTUD4 3'UTR 0.17 TCGA-LN-A49X-01 4 6643775 6643775 C G MRFAP1 3'UTR 0.13 TCGA-LN-A49X-01 4 76439454 76439454 G A RCHY1 Nonsense_Mutation p.R15* 0.11 TCGA-LN-A49X-01 5 108672903 108672903 T C PJA2 3'UTR 0.12 TCGA-LN-A49X-01 5 137753253 137753253 A T KDM3B Missense_Mutation p.Q1130L 0.16 deleterious(0.01) benign(0.306) TCGA-LN-A49X-01 5 138221923 138221923 A T CTNNA1 Missense_Mutation p.D362V 0.10 tolerated(0.17) benign(0.065) TCGA-LN-A49X-01 5 140182336 140182336 C T PCDHA3 Silent p.Y518Y 0.05 TCGA-LN-A49X-01 5 140242612 140242612 C G AC005609.1 Missense_Mutation p.V122L 0.09 tolerated_low_confidence(0.22) benign(0.198) TCGA-LN-A49X-01 5 140626138 140626138 G T PCDHB15 Missense_Mutation p.C331F 0.19 deleterious_low_confidence(0) probably_damaging(0.918) TCGA-LN-A49X-01 5 140870083 140870083 G A PCDHGC5 Missense_Mutation p.A426T 0.14 deleterious(0) probably_damaging(0.999) TCGA-LN-A49X-01 5 14693028 14693028 C A FAM105B Nonsense_Mutation p.Y310* 0.31 TCGA-LN-A49X-01 5 884124 884124 C T BRD9 Missense_Mutation p.V299M 0.38 tolerated(0.06) probably_damaging(0.975) TCGA-LN-A49X-01 6 121638672 121638672 T C TBC1D32 Missense_Mutation p.N155S 0.04 tolerated(0.1) benign(0.108) TCGA-LN-A49X-01 6 158932256 158932256 T A TULP4 3'UTR 0.11 TCGA-LN-A49X-01 6 17661926 17661926 T C NUP153 Silent p.R451R 0.19 TCGA-LN-A49X-01 6 24705881 24705881 G C C6orf62 3'UTR 0.15 TCGA-LN-A49X-01 6 26032006 26032006 C A HIST1H3B Nonsense_Mutation p.E95* 0.14 TCGA-LN-A49X-01 6 26251922 26251922 C G HIST1H2BH Missense_Mutation p.S15C 0.11 deleterious_low_confidence(0.02) benign(0.031) TCGA-LN-A49X-01 7 115580576 115580576 C T TFEC 3'UTR 0.26 TCGA-LN-A49X-01 7 12414695 12414695 C T VWDE Missense_Mutation p.V395M 0.13 deleterious(0) probably_damaging(0.958) TCGA-LN-A49X-01 7 12680126 12680126 T C SCIN Missense_Mutation p.I522T 0.14 tolerated(0.16) possibly_damaging(0.738) TCGA-LN-A49X-01 7 37780568 37780568 C A GPR141 Silent p.A191A 0.11 TCGA-LN-A49X-01 8 144657109 144657109 G T NAPRT1 Intron 0.23 TCGA-LN-A49X-01 8 28421393 28421393 A - FZD3 3'UTR 0.15 TCGA-LN-A49X-01 8 41906575 41906575 T A KAT6A 5'UTR 0.13 TCGA-LN-A49X-01 8 42037508 42037508 C T PLAT Silent p.P433P 0.11 TCGA-LN-A49X-01 8 53050009 53050009 C T ST18 Missense_Mutation p.V735M 0.21 deleterious(0.02) probably_damaging(1) TCGA-LN-A49X-01 8 54960502 54960502 C T LYPLA1 3'UTR 0.10 TCGA-LN-A49X-01 8 57358292 57358292 G A PENK Intron 0.09 TCGA-LN-A49X-01 8 59496579 59496579 T C NSMAF 3'UTR 0.07 TCGA-LN-A49X-01 9 130868491 130868491 G T SLC25A25 Silent p.G321G 0.33 TCGA-LN-A49X-01 X 106224650 106224650 T C MORC4 Silent p.V244V 0.13 TCGA-LN-A49X-01 X 155233447 155233447 C T IL9R Silent p.I120I 0.25 TCGA-LN-A49X-01 X 96140055 96140055 A G RPA4 Missense_Mutation p.Y249C 0.70 deleterious(0) probably_damaging(0.984) TCGA-LN-A49Y-01 10 101716195 101716195 C A DNMBP Missense_Mutation p.A346S 1.00 tolerated_low_confidence(0.3) benign(0.014) TCGA-LN-A49Y-01 10 121565957 121565957 C T INPP5F Nonsense_Mutation p.Q469* 0.86 TCGA-LN-A49Y-01 10 127686054 127686054 G T FANK1 Missense_Mutation p.S180I 0.87 deleterious(0.01) probably_damaging(0.951) TCGA-LN-A49Y-01 10 135015190 135015190 G T KNDC1 Missense_Mutation p.G1059W 0.59 deleterious(0.01) possibly_damaging(0.734) TCGA-LN-A49Y-01 10 28023695 28023695 G C MKX Missense_Mutation p.H176Q 0.43 tolerated(0.44) benign(0.257) TCGA-LN-A49Y-01 10 47678036 47678036 T C ANTXRL Intron 0.67 TCGA-LN-A49Y-01 10 56106232 56106232 C A PCDH15 Missense_Mutation p.G163C 0.87 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 10 75434061 75434061 C A AGAP5 3'UTR 0.08 TCGA-LN-A49Y-01 10 7848961 7848961 C A ATP5C1 3'UTR 0.41 TCGA-LN-A49Y-01 10 93704 93704 T C TUBB8 Missense_Mutation p.I210V 0.49 deleterious_low_confidence(0.01) benign(0.245) TCGA-LN-A49Y-01 11 107518316 107518316 G T ELMOD1 Silent p.L181L 0.48 TCGA-LN-A49Y-01 11 108117828 108117828 G A ATM Missense_Mutation p.E347K 0.42 deleterious(0.01) benign(0.283) TCGA-LN-A49Y-01 11 108117836 108117836 G A ATM Missense_Mutation p.M349I 0.36 tolerated(0.19) benign(0.027) TCGA-LN-A49Y-01 11 113569745 113569745 C A TMPRSS5 Silent p.L70L 0.68 TCGA-LN-A49Y-01 11 123814164 123814164 G A OR6T1 Nonsense_Mutation p.R128* 0.61 TCGA-LN-A49Y-01 11 17333611 17333611 G T NUCB2 Missense_Mutation p.D286Y 0.90 deleterious(0) probably_damaging(0.998) TCGA-LN-A49Y-01 11 30946948 30946948 C A DCDC1 Nonsense_Mutation p.E969* 0.70 TCGA-LN-A49Y-01 11 46430144 46430144 C A AMBRA1 Missense_Mutation p.A1018S 0.30 tolerated_low_confidence(0.21) possibly_damaging(0.783) TCGA-LN-A49Y-01 11 55927473 55927473 G C OR8K5 Missense_Mutation p.F107L 0.50 deleterious_low_confidence(0.04) probably_damaging(0.993) TCGA-LN-A49Y-01 11 56000131 56000131 G C OR5T2 Silent p.P177P 0.41 TCGA-LN-A49Y-01 11 60620689 60620689 G A PTGDR2 Silent p.F169F 0.78 TCGA-LN-A49Y-01 11 60785799 60785799 G A CD6 Missense_Mutation p.G626R 0.96 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 11 65266761 65266761 C G MALAT1 RNA 0.07 TCGA-LN-A49Y-01 11 65625940 65625940 C A CFL1 5'UTR 0.50 TCGA-LN-A49Y-01 11 66358083 66358083 C A CCDC87 Missense_Mutation p.G802W 0.23 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 11 67168163 67168163 C A PPP1CA Nonsense_Mutation p.E150* 0.15 TCGA-LN-A49Y-01 11 70332808 70332808 C G SHANK2 Missense_Mutation p.G1198A 0.10 tolerated(0.3) benign(0.001) TCGA-LN-A49Y-01 11 71293036 71293036 G T KRTAP5-11 3'UTR 0.62 TCGA-LN-A49Y-01 11 73007949 73007949 G T P2RY6 Missense_Mutation p.C129F 0.29 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 11 78383285 78383285 C A TENM4 Silent p.R1862R 0.25 TCGA-LN-A49Y-01 11 78383286 78383286 C A TENM4 Missense_Mutation p.R1862L 0.24 deleterious(0.01) benign(0.082) TCGA-LN-A49Y-01 12 111749974 111749974 G T CUX2 Missense_Mutation p.Q657H 0.47 deleterious(0.03) benign(0.414) TCGA-LN-A49Y-01 12 112673435 112673435 T A HECTD4 Silent p.G1720G 0.46 TCGA-LN-A49Y-01 12 118627865 118627865 C T TAOK3 Intron 0.51 TCGA-LN-A49Y-01 12 121442237 121442237 C A C12orf43 Missense_Mutation p.D170Y 0.54 deleterious(0) probably_damaging(0.966) TCGA-LN-A49Y-01 12 122437781 122437781 G C WDR66 Missense_Mutation p.G1056R 0.53 deleterious(0) probably_damaging(0.957) TCGA-LN-A49Y-01 12 133201572 133201572 C A POLE Silent p.L2222L 0.50 TCGA-LN-A49Y-01 12 13716394 13716394 G A GRIN2B Silent p.L1260L 0.58 TCGA-LN-A49Y-01 12 18889200 18889200 T A PLCZ1 Missense_Mutation p.K30N 0.48 tolerated(0.16) possibly_damaging(0.52) TCGA-LN-A49Y-01 12 20876174 20876174 C A SLCO1C1 Missense_Mutation p.A391D 0.43 deleterious(0) probably_damaging(0.984) TCGA-LN-A49Y-01 12 22012598 22012598 G T ABCC9 Silent p.G809G 0.41 TCGA-LN-A49Y-01 12 29617440 29617440 C A OVCH1 Missense_Mutation p.D709Y 0.58 deleterious(0.01) probably_damaging(0.943) TCGA-LN-A49Y-01 12 50492592 50492592 C T SMARCD1 Silent p.Y496Y 0.41 TCGA-LN-A49Y-01 12 5155214 5155214 G T KCNA5 3'UTR 0.43 TCGA-LN-A49Y-01 12 55794493 55794493 C T OR6C65 Missense_Mutation p.L61F 0.33 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-LN-A49Y-01 12 57850479 57850479 C T INHBE Missense_Mutation p.L301F 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-LN-A49Y-01 12 62103999 62103999 G T FAM19A2 3'UTR 0.64 TCGA-LN-A49Y-01 12 7966711 7966711 G T SLC2A14 3'UTR 0.55 TCGA-LN-A49Y-01 12 80615872 80615872 C T OTOGL Silent p.I103I 0.48 TCGA-LN-A49Y-01 12 81102703 81102704 - A MYF6 Frame_Shift_Ins p.L233Tfs*37 0.35 TCGA-LN-A49Y-01 12 88390397 88390397 G T C12orf50 Missense_Mutation p.P106T 0.41 tolerated(0.16) benign(0.329) TCGA-LN-A49Y-01 12 96983278 96983278 C T C12orf55 Missense_Mutation p.S1050L 0.48 deleterious(0.01) probably_damaging(0.954) TCGA-LN-A49Y-01 13 103443452 103443452 C A KDELC1 Silent p.T294T 0.88 TCGA-LN-A49Y-01 13 114009757 114009757 C A GRTP1 Missense_Mutation p.R74L 0.95 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 13 25367319 25367319 C A RNF17 Missense_Mutation p.P359T 0.41 tolerated(0.25) probably_damaging(0.981) TCGA-LN-A49Y-01 13 30072650 30072650 G C MTUS2 Missense_Mutation p.K1268N 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A49Y-01 13 39438592 39438592 C G FREM2 Missense_Mutation p.P2611R 0.37 deleterious(0) probably_damaging(0.946) TCGA-LN-A49Y-01 13 46718648 46718648 C A LCP1 Silent p.T394T 0.38 TCGA-LN-A49Y-01 13 46808427 46808427 G T LRRC63 Missense_Mutation p.M311I 0.46 deleterious(0.03) possibly_damaging(0.693) TCGA-LN-A49Y-01 13 66877566 66877566 C A PCDH9 3'UTR 0.38 TCGA-LN-A49Y-01 13 72131182 72131182 T A DACH1 Missense_Mutation p.E517V 0.90 benign(0.138) TCGA-LN-A49Y-01 13 77673124 77673124 G A MYCBP2 Missense_Mutation p.S2684F 0.71 benign(0.004) TCGA-LN-A49Y-01 14 101318813 101318813 G T MIR770 RNA 0.38 TCGA-LN-A49Y-01 14 103435036 103435036 C A CDC42BPB Silent p.R671R 0.35 TCGA-LN-A49Y-01 14 106173779 106173779 C T IGHA1 Missense_Mutation p.R263H 0.35 tolerated(0.09) benign(0.34) TCGA-LN-A49Y-01 14 22005110 22005110 G C SALL2 5'UTR 0.46 TCGA-LN-A49Y-01 14 22111642 22111642 A C TRAV1-2 Missense_Mutation p.Q54H 0.45 deleterious(0.04) possibly_damaging(0.519) TCGA-LN-A49Y-01 14 22554771 22554771 C G TRAV23DV6 Missense_Mutation p.Q15E 0.40 deleterious(0.03) possibly_damaging(0.507) TCGA-LN-A49Y-01 14 24836196 24836196 G A NFATC4 5'UTR 0.41 TCGA-LN-A49Y-01 14 44974273 44974273 C G FSCB Missense_Mutation p.E640Q 0.21 deleterious(0.01) unknown(0) TCGA-LN-A49Y-01 14 64421498 64421498 G A SYNE2 Missense_Mutation p.A218T 0.61 benign(0.059) TCGA-LN-A49Y-01 14 67675093 67675093 G A FAM71D Missense_Mutation p.E363K 0.43 tolerated_low_confidence(0.05) benign(0.051) TCGA-LN-A49Y-01 14 68113432 68113432 G C ARG2 Silent p.L198L 0.43 TCGA-LN-A49Y-01 14 80328302 80328302 G T NRXN3 Missense_Mutation p.V1061L 0.40 deleterious(0) benign(0.001) TCGA-LN-A49Y-01 14 95030234 95030234 G A SERPINA4 Missense_Mutation p.V139M 0.41 tolerated(0.92) benign(0.167) TCGA-LN-A49Y-01 15 23811871 23811871 C A MKRN3 Nonsense_Mutation p.C314* 0.58 TCGA-LN-A49Y-01 15 23889959 23889959 C T MAGEL2 Silent p.R374R 0.38 TCGA-LN-A49Y-01 15 24922115 24922115 C A NPAP1 Missense_Mutation p.H367Q 0.40 tolerated(0.26) benign(0.091) TCGA-LN-A49Y-01 15 25463800 25463800 A C SNORD115-27 5'Flank 0.45 TCGA-LN-A49Y-01 15 33261476 33261476 C T FMN1 Missense_Mutation p.R586K 0.41 deleterious(0) unknown(0) TCGA-LN-A49Y-01 15 33895388 33895388 G A RYR3 Missense_Mutation p.E663K 0.50 probably_damaging(0.999) TCGA-LN-A49Y-01 15 41476502 41476502 T G EXD1 Missense_Mutation p.N391T 0.36 tolerated(0.42) benign(0) TCGA-LN-A49Y-01 15 50168486 50168486 C A ATP8B4 Missense_Mutation p.V1006F 0.50 deleterious(0.01) possibly_damaging(0.83) TCGA-LN-A49Y-01 15 59808891 59808891 C A FAM81A Silent p.A278A 0.46 TCGA-LN-A49Y-01 15 86791012 86791012 G T AGBL1 Missense_Mutation p.G167C 0.44 deleterious(0) possibly_damaging(0.778) TCGA-LN-A49Y-01 15 89169568 89169568 G T AEN Missense_Mutation p.R43L 0.44 deleterious(0) benign(0.253) TCGA-LN-A49Y-01 15 91434332 91434332 C T FES Silent p.L481L 0.40 TCGA-LN-A49Y-01 16 109825 109825 C A RHBDF1 Splice_Site p.X575_splice 0.45 TCGA-LN-A49Y-01 16 112579 112579 C G RHBDF1 Missense_Mutation p.G304R 0.55 tolerated(0.19) probably_damaging(0.935) TCGA-LN-A49Y-01 16 16276745 16276745 G T ABCC6 Silent p.V662V 0.38 TCGA-LN-A49Y-01 16 20556566 20556566 C A ACSM2B Missense_Mutation p.K398N 0.56 tolerated(1) benign(0.048) TCGA-LN-A49Y-01 16 21964769 21964769 T A UQCRC2 Missense_Mutation p.S9T 0.65 tolerated_low_confidence(0.33) benign(0.002) TCGA-LN-A49Y-01 16 23464262 23464262 A G COG7 Silent p.N18N 0.45 TCGA-LN-A49Y-01 16 24135161 24135161 C A PRKCB Silent p.A308A 0.38 TCGA-LN-A49Y-01 16 29909173 29909173 C G SEZ6L2 Splice_Site p.X71_splice 0.48 TCGA-LN-A49Y-01 16 31426246 31426246 C G ITGAD Silent p.P739P 0.43 TCGA-LN-A49Y-01 16 3283513 3283513 C T ZNF200 Silent p.Q81Q 0.06 TCGA-LN-A49Y-01 16 4803036 4803036 C A ZNF500 Missense_Mutation p.G262C 0.57 deleterious(0) probably_damaging(0.969) TCGA-LN-A49Y-01 16 50707505 50707505 G C SNX20 Missense_Mutation p.Q255E 0.45 tolerated(1) benign(0.002) TCGA-LN-A49Y-01 16 55616969 55616969 G C LPCAT2 Missense_Mutation p.E532Q 0.37 tolerated(0.06) benign(0.046) TCGA-LN-A49Y-01 16 55806303 55806303 G T CES1P1 RNA 0.59 TCGA-LN-A49Y-01 16 69007950 69007950 C T TANGO6 Silent p.D907D 0.38 TCGA-LN-A49Y-01 16 70874024 70874024 C A HYDIN Missense_Mutation p.G4329V 0.47 probably_damaging(0.988) TCGA-LN-A49Y-01 16 70891651 70891651 G T HYDIN Silent p.I4084I 0.24 TCGA-LN-A49Y-01 16 74506261 74506261 G C GLG1 Missense_Mutation p.Q701E 0.46 tolerated(0.43) benign(0.108) TCGA-LN-A49Y-01 16 75562965 75562965 C T CHST5 3'UTR 0.62 TCGA-LN-A49Y-01 16 85122099 85122099 C G KIAA0513 3'UTR 0.48 TCGA-LN-A49Y-01 16 85697186 85697186 C T GSE1 Silent p.F870F 0.50 TCGA-LN-A49Y-01 16 88947724 88947724 G A CBFA2T3 Silent p.S459S 0.33 TCGA-LN-A49Y-01 17 10219245 10219245 A T MYH13 Missense_Mutation p.M1279K 0.50 tolerated(0.07) benign(0.016) TCGA-LN-A49Y-01 17 12894923 12894923 C T ARHGAP44 3'UTR 0.41 TCGA-LN-A49Y-01 17 18284783 18284783 G A EVPLL Missense_Mutation p.V56M 0.54 deleterious(0.05) benign(0.018) TCGA-LN-A49Y-01 17 36667229 36667229 C T ARHGAP23 3'UTR 0.57 TCGA-LN-A49Y-01 17 41738714 41738714 T A MEOX1 Silent p.S63S 0.53 TCGA-LN-A49Y-01 17 56499659 56499659 G C HSF5 3'UTR 0.34 TCGA-LN-A49Y-01 17 57289759 57289759 G T SMG8 Missense_Mutation p.R606L 0.47 deleterious(0) probably_damaging(0.988) TCGA-LN-A49Y-01 17 62856576 62856576 C G LRRC37A3 Missense_Mutation p.A1230P 0.29 deleterious(0.03) benign(0.027) TCGA-LN-A49Y-01 17 74714728 74714728 C T JMJD6 Intron 0.18 TCGA-LN-A49Y-01 17 74714927 74714927 C G JMJD6 Missense_Mutation p.E366Q 0.29 tolerated(0.26) benign(0.257) TCGA-LN-A49Y-01 17 7577114 7577114 C A TP53 Missense_Mutation p.C275F 0.47 deleterious(0) probably_damaging(0.983) TCGA-LN-A49Y-01 17 7577547 7577547 C A TP53 Missense_Mutation p.G245V 0.47 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 17 77916004 77916004 G T TBC1D16 Missense_Mutation p.T637K 0.77 deleterious(0) probably_damaging(0.991) TCGA-LN-A49Y-01 17 7942415 7942415 G T ALOX15B 5'UTR 0.36 TCGA-LN-A49Y-01 17 8063738 8063738 G A VAMP2 3'UTR 0.40 TCGA-LN-A49Y-01 17 80789738 80789738 G T ZNF750 Nonsense_Mutation p.S198* 0.75 TCGA-LN-A49Y-01 17 8736255 8736255 C T PIK3R6 Silent p.L251L 0.47 TCGA-LN-A49Y-01 17 9604869 9604869 G A USP43 Silent p.Q621Q 0.44 TCGA-LN-A49Y-01 18 14478919 14478919 G T CXADRP3 RNA 0.45 TCGA-LN-A49Y-01 18 19020304 19020304 G T GREB1L Missense_Mutation p.G342C 0.49 deleterious(0) possibly_damaging(0.678) TCGA-LN-A49Y-01 18 25543357 25543357 G T CDH2 Silent p.A826A 0.12 TCGA-LN-A49Y-01 18 2590098 2590098 G T NDC80 Nonsense_Mutation p.E318* 0.31 TCGA-LN-A49Y-01 18 42456562 42456562 G A SETBP1 Intron 0.87 TCGA-LN-A49Y-01 18 44125297 44125297 C G LOXHD1 Missense_Mutation p.G90A 0.79 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 19 12792434 12792434 G T DHPS Missense_Mutation p.F49L 0.46 tolerated(0.28) benign(0.004) TCGA-LN-A49Y-01 19 14740853 14740853 G T EMR3 Missense_Mutation p.Q604K 0.54 deleterious(0.02) probably_damaging(0.993) TCGA-LN-A49Y-01 19 15285174 15285174 C A NOTCH3 Missense_Mutation p.D1481Y 0.34 deleterious(0) probably_damaging(0.997) TCGA-LN-A49Y-01 19 18170809 18170809 G T IL12RB1 Silent p.G626G 0.31 TCGA-LN-A49Y-01 19 2810172 2810172 G T THOP1 Intron 0.60 TCGA-LN-A49Y-01 19 39694850 39694850 G A SYCN Silent p.S15S 0.37 TCGA-LN-A49Y-01 19 40581754 40581754 C A ZNF780A Missense_Mutation p.G200W 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A49Y-01 19 41025381 41025381 G T SPTBN4 Missense_Mutation p.V993L 0.53 tolerated(0.66) benign(0.019) TCGA-LN-A49Y-01 19 41601712 41601712 C G CYP2A13 Missense_Mutation p.L451V 0.06 deleterious(0.01) benign(0.029) TCGA-LN-A49Y-01 19 42474551 42474551 C A ATP1A3 Missense_Mutation p.G816C 0.21 deleterious(0.05) probably_damaging(0.986) TCGA-LN-A49Y-01 19 43514191 43514191 G T PSG11 Missense_Mutation p.P323T 0.51 tolerated(0.09) benign(0.028) TCGA-LN-A49Y-01 19 48342913 48342913 C A CRX Missense_Mutation p.P197T 0.68 tolerated(0.39) possibly_damaging(0.696) TCGA-LN-A49Y-01 19 51021614 51021614 G C LRRC4B Missense_Mutation p.N452K 0.67 deleterious(0.03) probably_damaging(0.999) TCGA-LN-A49Y-01 19 51133168 51133168 C G SYT3 Missense_Mutation p.G312A 0.43 tolerated(0.15) benign(0.001) TCGA-LN-A49Y-01 19 52919741 52919741 G A ZNF528 Missense_Mutation p.E546K 0.57 deleterious(0.01) possibly_damaging(0.854) TCGA-LN-A49Y-01 19 52954467 52954467 G T ZNF578 5'Flank 0.65 TCGA-LN-A49Y-01 19 53619674 53619674 C A ZNF415 Missense_Mutation p.D10Y 0.53 deleterious(0) probably_damaging(0.979) TCGA-LN-A49Y-01 19 54297247 54297247 C T NLRP12 3'UTR 0.48 TCGA-LN-A49Y-01 19 55144634 55144634 C G LILRB1 Missense_Mutation p.Q376E 0.06 tolerated(0.31) benign(0.002) TCGA-LN-A49Y-01 19 55858816 55858816 G T SUV420H2 Nonstop_Mutation p.*463Lext*33 0.67 TCGA-LN-A49Y-01 19 58198238 58198238 A G ZNF551 Missense_Mutation p.T199A 0.67 tolerated(0.13) benign(0.005) TCGA-LN-A49Y-01 19 58601532 58601532 C A ZSCAN18 Nonsense_Mutation p.E91* 0.54 TCGA-LN-A49Y-01 19 8127175 8127175 C A CCL25 3'UTR 0.46 TCGA-LN-A49Y-01 19 8161811 8161811 G T FBN3 Nonsense_Mutation p.C1789* 0.53 TCGA-LN-A49Y-01 19 8601439 8601439 G T MYO1F Silent p.I614I 0.51 TCGA-LN-A49Y-01 1 11580782 11580782 G T PTCHD2 Missense_Mutation p.A747S 0.50 tolerated(0.06) possibly_damaging(0.731) TCGA-LN-A49Y-01 1 118584486 118584486 G T SPAG17 Silent p.V998V 0.42 TCGA-LN-A49Y-01 1 12908313 12908313 C T HNRNPCL1 5'UTR 0.14 TCGA-LN-A49Y-01 1 150550893 150550893 T G MCL1 Missense_Mutation p.S255R 0.39 tolerated(0.17) benign(0.126) TCGA-LN-A49Y-01 1 152280796 152280796 G T FLG Missense_Mutation p.A2189E 0.34 possibly_damaging(0.587) TCGA-LN-A49Y-01 1 155829509 155829509 C A SYT11 5'UTR 0.48 TCGA-LN-A49Y-01 1 155884149 155884149 C A KIAA0907 Intron 0.55 TCGA-LN-A49Y-01 1 157659609 157659609 C G FCRL3 Missense_Mutation p.A597P 0.32 deleterious(0.03) possibly_damaging(0.643) TCGA-LN-A49Y-01 1 157665953 157665953 G T FCRL3 Missense_Mutation p.R337S 0.48 tolerated(0.07) possibly_damaging(0.626) TCGA-LN-A49Y-01 1 157738276 157738276 C A FCRL2 Missense_Mutation p.G271C 0.34 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 1 16945480 16945480 C A RP5-1182A14.5 3'Flank 0.13 TCGA-LN-A49Y-01 1 173808541 173808541 A G DARS2 Missense_Mutation p.I293V 0.08 tolerated(0.28) benign(0.047) TCGA-LN-A49Y-01 1 181685207 181685207 G T CACNA1E Silent p.R419R 0.56 TCGA-LN-A49Y-01 1 181688895 181688895 G A CACNA1E Silent p.V549V 0.42 TCGA-LN-A49Y-01 1 186135324 186135324 G A HMCN1 Missense_Mutation p.E5110K 0.33 benign(0.011) TCGA-LN-A49Y-01 1 201187684 201187684 C A IGFN1 Silent p.R3266R 0.84 TCGA-LN-A49Y-01 1 205275371 205275371 C G NUAK2 Missense_Mutation p.S212T 0.86 deleterious(0) probably_damaging(0.997) TCGA-LN-A49Y-01 1 20990952 20990952 G C KIF17 3'UTR 0.41 TCGA-LN-A49Y-01 1 228470840 228470840 G T OBSCN Missense_Mutation p.K3293N 0.60 probably_damaging(0.999) TCGA-LN-A49Y-01 1 248617052 248617052 G T OR2T2 Silent p.A318A 0.75 TCGA-LN-A49Y-01 1 248902960 248902960 G A LYPD8 Silent p.L64L 0.10 TCGA-LN-A49Y-01 1 32098083 32098083 C A PEF1 Intron 0.46 TCGA-LN-A49Y-01 1 36937913 36937913 C G CSF3R Missense_Mutation p.R308P 0.47 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 1 38510141 38510141 G T POU3F1 3'UTR 0.39 TCGA-LN-A49Y-01 1 44476525 44476525 C T SLC6A9 Silent p.K93K 0.09 TCGA-LN-A49Y-01 1 55118958 55118958 G A MROH7 Missense_Mutation p.R120H 0.43 tolerated_low_confidence(0.13) benign(0.001) TCGA-LN-A49Y-01 1 6534123 6534123 C A PLEKHG5 Missense_Mutation p.A260S 0.42 tolerated(0.47) benign(0.006) TCGA-LN-A49Y-01 1 72241972 72241972 T G NEGR1 Missense_Mutation p.K140Q 0.59 tolerated(0.2) possibly_damaging(0.733) TCGA-LN-A49Y-01 1 94354354 94354354 C A GCLM 3'UTR 0.47 TCGA-LN-A49Y-01 20 13539707 13539707 C A TASP1 Missense_Mutation p.R208M 0.85 deleterious(0.01) benign(0.006) TCGA-LN-A49Y-01 20 13539717 13539717 G C TASP1 Missense_Mutation p.L205V 0.81 tolerated(0.09) benign(0.18) TCGA-LN-A49Y-01 20 30585278 30585278 C T XKR7 3'UTR 0.35 TCGA-LN-A49Y-01 20 32254766 32254766 G A ACTL10 5'UTR 0.36 TCGA-LN-A49Y-01 20 46256687 46256687 G T NCOA3 Missense_Mutation p.C248F 0.50 deleterious(0) possibly_damaging(0.883) TCGA-LN-A49Y-01 20 60895671 60895671 C A LAMA5 Missense_Mutation p.V2235L 0.20 benign(0.001) TCGA-LN-A49Y-01 20 61150722 61150722 C T C20orf166 5'UTR 0.53 TCGA-LN-A49Y-01 20 61870155 61870155 C T BIRC7 Intron 0.33 TCGA-LN-A49Y-01 20 61917478 61917478 G C ARFGAP1 Intron 0.42 TCGA-LN-A49Y-01 21 18981448 18981448 A G BTG3 Silent p.I5I 0.42 TCGA-LN-A49Y-01 21 43735501 43735501 G C TFF3 Missense_Mutation p.P9R 0.53 deleterious_low_confidence(0.02) benign(0.041) TCGA-LN-A49Y-01 21 44450342 44450342 G T PKNOX1 3'UTR 0.21 TCGA-LN-A49Y-01 21 45950950 45950950 C A TSPEAR Silent p.R203R 0.32 TCGA-LN-A49Y-01 21 47775526 47775526 G T PCNT Nonsense_Mutation p.E641* 0.48 TCGA-LN-A49Y-01 21 47775529 47775529 G A PCNT Missense_Mutation p.G642R 0.46 probably_damaging(0.979) TCGA-LN-A49Y-01 22 23077381 23077381 G T IGLV2-18 Missense_Mutation p.R53L 0.43 tolerated_low_confidence(0.44) benign(0.001) TCGA-LN-A49Y-01 22 24718230 24718230 A G SPECC1L Missense_Mutation p.T428A 0.58 tolerated(0.08) possibly_damaging(0.591) TCGA-LN-A49Y-01 22 26902835 26902835 G A TFIP11 Missense_Mutation p.A90V 0.38 tolerated(0.12) possibly_damaging(0.701) TCGA-LN-A49Y-01 22 30414035 30414035 C T MTMR3 Silent p.T598T 0.27 TCGA-LN-A49Y-01 22 30681332 30681332 G A GATSL3 3'UTR 0.50 TCGA-LN-A49Y-01 22 32843205 32843205 G T BPIFC Missense_Mutation p.P123Q 0.48 tolerated(0.16) probably_damaging(0.983) TCGA-LN-A49Y-01 22 37485698 37485698 C A TMPRSS6 Silent p.L261L 0.49 TCGA-LN-A49Y-01 22 38083951 38083951 G T NOL12 Nonsense_Mutation p.E40* 0.46 TCGA-LN-A49Y-01 22 45309806 45309806 C G PHF21B Missense_Mutation p.E243Q 0.37 tolerated(0.09) benign(0.116) TCGA-LN-A49Y-01 22 46136258 46136258 G C ATXN10 Missense_Mutation p.R338P 0.46 deleterious(0) possibly_damaging(0.88) TCGA-LN-A49Y-01 22 46493817 46493817 G T FLJ27365 Missense_Mutation p.R4L 0.45 tolerated_low_confidence(0.35) benign(0.433) TCGA-LN-A49Y-01 2 100163853 100163853 G A AFF3 3'UTR 0.96 TCGA-LN-A49Y-01 2 102029526 102029526 C G RFX8 Missense_Mutation p.R190P 0.73 deleterious(0) probably_damaging(0.954) TCGA-LN-A49Y-01 2 120922456 120922456 G A EPB41L5 Silent p.E644E 0.83 TCGA-LN-A49Y-01 2 128877948 128877948 G T UGGT1 Silent p.L297L 0.85 TCGA-LN-A49Y-01 2 128914889 128914889 G T UGGT1 Missense_Mutation p.R775L 0.81 deleterious(0) possibly_damaging(0.795) TCGA-LN-A49Y-01 2 141816620 141816620 T A LRP1B Nonsense_Mutation p.R414* 0.70 TCGA-LN-A49Y-01 2 157442767 157442767 G A GPD2 3'UTR 0.88 TCGA-LN-A49Y-01 2 177034035 177034035 G T HOXD3 Missense_Mutation p.G65C 0.88 deleterious(0.02) possibly_damaging(0.574) TCGA-LN-A49Y-01 2 179470053 179470053 C A TTN Intron 0.88 TCGA-LN-A49Y-01 2 179579779 179579779 C A TTN Nonsense_Mutation p.E8712* 0.91 TCGA-LN-A49Y-01 2 179631333 179631333 C T TTN Missense_Mutation p.E3160K 0.73 TCGA-LN-A49Y-01 2 191894549 191894549 C T STAT4 3'UTR 0.89 TCGA-LN-A49Y-01 2 217280027 217280027 G A SMARCAL1 Silent p.S200S 0.40 TCGA-LN-A49Y-01 2 231249995 231249995 C G SP140L Missense_Mutation p.L254V 0.49 tolerated(0.08) possibly_damaging(0.889) TCGA-LN-A49Y-01 2 27599346 27599346 G C SNX17 Missense_Mutation p.E420Q 0.58 tolerated(0.32) benign(0.322) TCGA-LN-A49Y-01 2 33764169 33764169 C A RASGRP3 Silent p.T390T 0.47 TCGA-LN-A49Y-01 2 33952528 33952528 G T AC009499.1 Intron 0.59 TCGA-LN-A49Y-01 2 3425669 3425669 G T TRAPPC12 Missense_Mutation p.R394S 0.38 deleterious(0) probably_damaging(0.969) TCGA-LN-A49Y-01 2 46986133 46986133 G C SOCS5 Missense_Mutation p.R155P 0.37 deleterious(0.04) probably_damaging(0.998) TCGA-LN-A49Y-01 2 50280637 50280637 C A NRXN1 Silent p.L1340L 0.33 TCGA-LN-A49Y-01 2 62363038 62363038 G C COMMD1 Missense_Mutation p.E179Q 0.59 tolerated(0.43) probably_damaging(0.991) TCGA-LN-A49Y-01 2 72606863 72606863 C A EXOC6B Missense_Mutation p.C706F 0.47 deleterious(0.02) probably_damaging(0.998) TCGA-LN-A49Y-01 2 84518478 84518478 C T FUNDC2P2 RNA 0.41 TCGA-LN-A49Y-01 2 88383991 88383991 G T SMYD1 Missense_Mutation p.K98N 0.54 deleterious(0.04) possibly_damaging(0.799) TCGA-LN-A49Y-01 2 89475972 89475972 T C IGKV2-24 Missense_Mutation p.Q67R 0.32 deleterious(0.01) benign(0.195) TCGA-LN-A49Y-01 2 89475973 89475973 G C IGKV2-24 Missense_Mutation p.Q67E 0.33 deleterious(0.02) benign(0.099) TCGA-LN-A49Y-01 2 89475974 89475974 G T IGKV2-24 Silent p.G66G 0.33 TCGA-LN-A49Y-01 2 95481484 95481484 G A ANKRD20A8P RNA 0.40 TCGA-LN-A49Y-01 2 97008912 97008912 G T NCAPH Silent p.A155A 0.41 TCGA-LN-A49Y-01 3 10392245 10392245 C A ATP2B2 Missense_Mutation p.R718L 0.96 tolerated(0.16) benign(0.019) TCGA-LN-A49Y-01 3 119156763 119156763 C T TMEM39A Missense_Mutation p.A255T 0.96 tolerated(0.68) benign(0.001) TCGA-LN-A49Y-01 3 123419172 123419172 T C MYLK Missense_Mutation p.K1048R 0.58 tolerated(0.19) benign(0.186) TCGA-LN-A49Y-01 3 129288754 129288754 C G PLXND1 Missense_Mutation p.G1266A 0.75 tolerated(0.06) benign(0.188) TCGA-LN-A49Y-01 3 130116450 130116450 G T COL6A5 Missense_Mutation p.G1198W 0.91 deleterious(0) probably_damaging(0.999) TCGA-LN-A49Y-01 3 138724356 138724356 G T PRR23A Missense_Mutation p.P252Q 0.69 deleterious(0.01) unknown(0) TCGA-LN-A49Y-01 3 142395088 142395088 G A PLS1 Missense_Mutation p.D152N 0.18 tolerated(0.5) benign(0.044) TCGA-LN-A49Y-01 3 146239439 146239456 CCAAGTCTGAATAACATA - PLSCR1 In_Frame_Del p.Y205_W210del 0.16 TCGA-LN-A49Y-01 3 16419499 16419499 G T RFTN1 Silent p.T184T 0.91 TCGA-LN-A49Y-01 3 179519471 179519471 C T PEX5L 3'UTR 0.24 TCGA-LN-A49Y-01 3 183882071 183882071 G A DVL3 Missense_Mutation p.G83D 0.83 deleterious(0.02) benign(0.172) TCGA-LN-A49Y-01 3 184107319 184107319 C A CHRD 3'UTR 0.27 TCGA-LN-A49Y-01 3 186507064 186507064 G C EIF4A2 3'UTR 0.13 TCGA-LN-A49Y-01 3 186947631 186947631 C T MASP1 3'Flank 0.21 TCGA-LN-A49Y-01 3 44491967 44491967 C A ZNF445 Silent p.L264L 0.77 TCGA-LN-A49Y-01 3 57431006 57431006 G A DNAH12 Silent p.L1417L 0.95 TCGA-LN-A49Y-01 3 7188296 7188296 C A GRM7 Nonsense_Mutation p.S226* 0.84 TCGA-LN-A49Y-01 3 7456848 7456848 C A GRM7 Missense_Mutation p.T391K 0.88 deleterious(0.05) possibly_damaging(0.824) TCGA-LN-A49Y-01 3 9991025 9991025 C T PRRT3 Missense_Mutation p.E259K 0.81 tolerated_low_confidence(0.12) benign(0.016) TCGA-LN-A49Y-01 4 102951371 102951371 C T BANK1 Nonsense_Mutation p.R617* 0.81 TCGA-LN-A49Y-01 4 115585172 115585172 G T UGT8 Missense_Mutation p.G282C 0.38 deleterious(0.03) possibly_damaging(0.907) TCGA-LN-A49Y-01 4 151504491 151504491 G A MAB21L2 Missense_Mutation p.D104N 0.56 tolerated(0.1) probably_damaging(0.99) TCGA-LN-A49Y-01 4 157732016 157732016 G A PDGFC Silent p.F156F 0.44 TCGA-LN-A49Y-01 4 175565081 175565081 C G GLRA3 Missense_Mutation p.M417I 0.44 tolerated(0.43) benign(0.003) TCGA-LN-A49Y-01 4 189026335 189026335 C A TRIML2 Missense_Mutation p.R13M 0.44 deleterious(0) probably_damaging(0.91) TCGA-LN-A49Y-01 4 53332 53332 G A ZNF595 5'UTR 0.14 TCGA-LN-A49Y-01 4 55164039 55164039 G C PDGFRA 3'UTR 0.36 TCGA-LN-A49Y-01 4 6050609 6050609 C A JAKMIP1 Missense_Mutation p.G668V 0.85 tolerated(0.09) probably_damaging(0.999) TCGA-LN-A49Y-01 4 6050610 6050610 C A JAKMIP1 Nonsense_Mutation p.G668* 0.85 TCGA-LN-A49Y-01 4 69179699 69179699 C G YTHDC1 3'UTR 0.52 TCGA-LN-A49Y-01 4 69535727 69535727 C T UGT2B15 Missense_Mutation p.D204N 0.34 deleterious(0.02) probably_damaging(0.958) TCGA-LN-A49Y-01 4 70461989 70461989 G T UGT2A1 Silent p.A325A 0.47 TCGA-LN-A49Y-01 4 71853520 71853520 A T MOB1B 3'UTR 0.46 TCGA-LN-A49Y-01 4 71853521 71853521 G A MOB1B 3'UTR 0.46 TCGA-LN-A49Y-01 4 72669693 72669693 C A GC 5'UTR 0.41 TCGA-LN-A49Y-01 4 77018807 77018807 C A ART3 Silent p.T264T 0.40 TCGA-LN-A49Y-01 4 80246777 80246777 G T NAA11 Silent p.G85G 0.38 TCGA-LN-A49Y-01 5 10250452 10250452 C T CCT5 5'UTR 0.60 TCGA-LN-A49Y-01 5 1221849 1221849 C A SLC6A19 Missense_Mutation p.P579T 0.52 deleterious(0) probably_damaging(0.996) TCGA-LN-A49Y-01 5 140176748 140176748 G A PCDHA2 Silent p.A733A 0.41 TCGA-LN-A49Y-01 5 140229769 140229769 G C PCDHA9 Silent p.P563P 0.53 TCGA-LN-A49Y-01 5 140347251 140347251 G T PCDHAC2 Silent p.T300T 0.59 TCGA-LN-A49Y-01 5 140389716 140389716 G T PCDHAC1 3'UTR 0.56 TCGA-LN-A49Y-01 5 140531971 140531971 G T PCDHB6 Silent p.L711L 0.39 TCGA-LN-A49Y-01 5 140554449 140554449 C A PCDHB7 Missense_Mutation p.P678Q 0.38 tolerated_low_confidence(0.57) benign(0.008) TCGA-LN-A49Y-01 5 140594187 140594187 C A PCDHB13 Silent p.G164G 0.47 TCGA-LN-A49Y-01 5 140869552 140869552 G T PCDHGC5 Missense_Mutation p.V249L 0.43 deleterious(0.03) possibly_damaging(0.686) TCGA-LN-A49Y-01 5 156679678 156679678 C A ITK Nonsense_Mutation p.S618* 1.00 TCGA-LN-A49Y-01 5 157075856 157075856 C T SOX30 Missense_Mutation p.R339Q 0.53 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 5 21751397 21751397 G C CDH12 3'UTR 0.31 TCGA-LN-A49Y-01 5 37014784 37014784 G T NIPBL Splice_Site p.X1521_splice 0.30 TCGA-LN-A49Y-01 5 6755387 6755387 G C PAPD7 3'UTR 0.63 TCGA-LN-A49Y-01 5 68715944 68715944 G T MARVELD2 Silent p.G244G 0.82 TCGA-LN-A49Y-01 6 109575736 109575736 T C C6orf183 RNA 0.37 TCGA-LN-A49Y-01 6 109767598 109767598 A T MICAL1 Missense_Mutation p.S774R 0.45 tolerated(0.32) benign(0.004) TCGA-LN-A49Y-01 6 118786703 118786703 C A CEP85L Missense_Mutation p.E764D 0.55 tolerated(0.29) benign(0.171) TCGA-LN-A49Y-01 6 150321319 150321319 G C RAET1K RNA 0.12 TCGA-LN-A49Y-01 6 158922786 158922786 G A TULP4 Silent p.S697S 0.49 TCGA-LN-A49Y-01 6 160575942 160575942 G C SLC22A1 Missense_Mutation p.A500P 0.48 deleterious(0.01) possibly_damaging(0.827) TCGA-LN-A49Y-01 6 169617510 169617510 T C THBS2 3'UTR 0.50 TCGA-LN-A49Y-01 6 18121616 18121616 A T NHLRC1 3'UTR 0.29 TCGA-LN-A49Y-01 6 24875925 24875925 C A FAM65B Missense_Mutation p.R32L 0.36 deleterious(0.01) probably_damaging(0.93) TCGA-LN-A49Y-01 6 25773853 25773853 C G SLC17A4 Missense_Mutation p.A313G 0.22 tolerated(0.23) benign(0.114) TCGA-LN-A49Y-01 6 26017517 26017517 C G HIST1H1A Missense_Mutation p.K148N 0.30 tolerated(0.06) unknown(0) TCGA-LN-A49Y-01 6 26184245 26184245 C T HIST1H2BE Silent p.I74I 0.40 TCGA-LN-A49Y-01 6 29142185 29142185 G T OR2J2 Missense_Mutation p.C258F 0.49 tolerated(0.48) benign(0.003) TCGA-LN-A49Y-01 6 29342679 29342679 C T OR12D3 Missense_Mutation p.R129H 0.35 tolerated(0.53) benign(0.002) TCGA-LN-A49Y-01 6 33048746 33048746 C A HLA-DPB1 Intron 0.48 TCGA-LN-A49Y-01 6 35471401 35471401 G C TULP1 Missense_Mutation p.R420G 0.50 deleterious(0) probably_damaging(0.979) TCGA-LN-A49Y-01 6 36653769 36653769 G T CDKN1A 3'UTR 0.39 TCGA-LN-A49Y-01 6 43484854 43484854 G T POLR1C Missense_Mutation p.A3S 0.56 tolerated(0.28) benign(0.007) TCGA-LN-A49Y-01 6 55128601 55128601 G T HCRTR2 Missense_Mutation p.R248L 0.35 deleterious(0.01) benign(0.434) TCGA-LN-A49Y-01 6 57372336 57372336 C A PRIM2 Missense_Mutation p.P248T 0.16 tolerated(0.06) probably_damaging(0.945) TCGA-LN-A49Y-01 6 65301594 65301594 G T EYS Missense_Mutation p.A1389E 0.55 tolerated(1) benign(0) TCGA-LN-A49Y-01 6 69665947 69665947 G T BAI3 Missense_Mutation p.W409C 0.47 deleterious(0) probably_damaging(0.999) TCGA-LN-A49Y-01 6 70049228 70049228 G T BAI3 Silent p.A1097A 0.45 TCGA-LN-A49Y-01 6 76640719 76640719 G T IMPG1 Missense_Mutation p.P732T 0.34 deleterious(0.04) possibly_damaging(0.743) TCGA-LN-A49Y-01 6 84233745 84233745 T A PRSS35 Missense_Mutation p.S195R 0.44 tolerated(0.57) benign(0) TCGA-LN-A49Y-01 7 108112732 108112732 C G PNPLA8 3'UTR 0.75 TCGA-LN-A49Y-01 7 111428763 111428763 G A DOCK4 Missense_Mutation p.S1119L 0.95 deleterious(0) probably_damaging(0.999) TCGA-LN-A49Y-01 7 126883165 126883165 G A GRM8 Missense_Mutation p.H32Y 0.41 tolerated(0.1) benign(0) TCGA-LN-A49Y-01 7 12729422 12729422 C G ARL4A 3'UTR 0.51 TCGA-LN-A49Y-01 7 128388853 128388853 G T CALU Missense_Mutation p.R80S 0.12 deleterious(0) probably_damaging(0.999) TCGA-LN-A49Y-01 7 137172381 137172381 C G DGKI Missense_Mutation p.R786P 0.38 deleterious(0) probably_damaging(0.999) TCGA-LN-A49Y-01 7 137284581 137284581 C A DGKI Missense_Mutation p.G413V 0.55 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 7 148800755 148800755 C A ZNF425 Silent p.A736A 0.81 TCGA-LN-A49Y-01 7 154237656 154237656 G T DPP6 Missense_Mutation p.R166I 0.75 tolerated(1) benign(0) TCGA-LN-A49Y-01 7 154785468 154785468 C T PAXIP1 Silent p.V76V 0.80 TCGA-LN-A49Y-01 7 29606258 29606258 G T PRR15 Missense_Mutation p.A105S 0.77 deleterious(0.03) probably_damaging(0.963) TCGA-LN-A49Y-01 7 38289146 38289146 G C TRGC2 Missense_Mutation p.P10R 0.26 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 7 44153426 44153440 CAGCGACGCCTGCAG - AEBP1 In_Frame_Del p.Q1020_Q1024del 0.21 TCGA-LN-A49Y-01 7 4874577 4874577 C A RADIL Silent p.A359A 0.41 TCGA-LN-A49Y-01 7 53103352 53103352 C A POM121L12 5'UTR 0.59 TCGA-LN-A49Y-01 7 75186055 75186055 C A HIP1 Nonsense_Mutation p.E548* 0.65 TCGA-LN-A49Y-01 7 76178978 76178978 G C UPK3B Intron 0.80 TCGA-LN-A49Y-01 7 77797398 77797398 C A MAGI2 Missense_Mutation p.G811C 0.49 deleterious(0) possibly_damaging(0.907) TCGA-LN-A49Y-01 7 86548612 86548612 C T KIAA1324L Missense_Mutation p.G472R 0.67 deleterious(0.02) possibly_damaging(0.801) TCGA-LN-A49Y-01 7 86577054 86577054 G C KIAA1324L Missense_Mutation p.D165E 0.48 tolerated(1) benign(0.001) TCGA-LN-A49Y-01 7 87196171 87196171 C A ABCB1 Missense_Mutation p.A154S 0.85 tolerated(0.67) benign(0.149) TCGA-LN-A49Y-01 7 98609934 98609934 G A TRRAP Missense_Mutation p.D3846N 0.03 possibly_damaging(0.465) TCGA-LN-A49Y-01 8 113569036 113569036 G A CSMD3 Missense_Mutation p.T1397I 0.43 deleterious(0.01) probably_damaging(0.964) TCGA-LN-A49Y-01 8 11831522 11831522 C A DEFB136 Missense_Mutation p.C54F 0.81 deleterious(0.03) probably_damaging(0.955) TCGA-LN-A49Y-01 8 142444981 142444981 G A PTP4A3 3'Flank 0.49 TCGA-LN-A49Y-01 8 143695284 143695284 G T ARC Missense_Mutation p.R117S 0.36 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-LN-A49Y-01 8 143921846 143921846 G T GML 5'UTR 0.50 TCGA-LN-A49Y-01 8 144688255 144688255 G A PYCRL Missense_Mutation p.R219C 0.41 deleterious(0) probably_damaging(0.947) TCGA-LN-A49Y-01 8 144947157 144947157 G T EPPK1 Silent p.R89R 0.40 TCGA-LN-A49Y-01 8 26627766 26627766 C A ADRA1A Intron 0.85 TCGA-LN-A49Y-01 8 37702674 37702674 C T BRF2 Silent p.E198E 0.17 TCGA-LN-A49Y-01 8 38708334 38708334 G A TACC1 3'UTR 0.71 TCGA-LN-A49Y-01 8 39502989 39502989 G C ADAM18 Missense_Mutation p.A348P 0.22 deleterious(0) probably_damaging(0.991) TCGA-LN-A49Y-01 8 56436366 56436366 C G XKR4 Silent p.A511A 0.45 TCGA-LN-A49Y-01 8 82670388 82670388 G T CHMP4C Missense_Mutation p.M165I 0.53 deleterious(0.02) benign(0.291) TCGA-LN-A49Y-01 8 85774568 85774568 C T RALYL Missense_Mutation p.R164C 0.41 deleterious(0) possibly_damaging(0.474) TCGA-LN-A49Y-01 8 86575214 86575214 C A REXO1L1P Silent p.T171T 0.26 TCGA-LN-A49Y-01 9 112898644 112898644 G C PALM2-AKAP2 Missense_Mutation p.E274Q 0.85 deleterious(0.03) possibly_damaging(0.859) TCGA-LN-A49Y-01 9 118982241 118982241 G T PAPPA Silent p.T648T 0.82 TCGA-LN-A49Y-01 9 121496 121496 G A CBWD1 Missense_Mutation p.R387C 0.46 deleterious_low_confidence(0.02) benign(0.001) TCGA-LN-A49Y-01 9 138439805 138439805 G C OBP2A Silent p.L122L 0.83 TCGA-LN-A49Y-01 9 35398978 35398978 G T UNC13B Silent p.A1258A 0.80 TCGA-LN-A49Y-01 9 78547359 78547359 C G PCSK5 Missense_Mutation p.S86W 0.86 deleterious(0) probably_damaging(0.986) TCGA-LN-A49Y-01 9 79270373 79270373 G C PRUNE2 Silent p.G2774G 1.00 TCGA-LN-A49Y-01 9 90296515 90296515 C A DAPK1 Missense_Mutation p.P733H 0.55 tolerated(0.14) benign(0.129) TCGA-LN-A49Y-01 X 104992962 104992962 A C IL1RAPL2 Missense_Mutation p.Y353S 0.93 deleterious(0.02) benign(0.259) TCGA-LN-A49Y-01 X 105125725 105125725 C G NRK Missense_Mutation p.R69G 0.82 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-LN-A49Y-01 X 114424215 114424215 G T RBMXL3 Missense_Mutation p.G71C 1.00 deleterious_low_confidence(0) probably_damaging(1) TCGA-LN-A49Y-01 X 115305011 115305011 T G AGTR2 3'UTR 0.95 TCGA-LN-A49Y-01 X 115305310 115305310 C T AGTR2 3'UTR 0.90 TCGA-LN-A49Y-01 X 125299265 125299265 C A DCAF12L2 Missense_Mutation p.G215C 0.90 deleterious(0) probably_damaging(1) TCGA-LN-A49Y-01 X 151899757 151899757 C T MAGEA12 3'UTR 0.05 TCGA-LN-A49Y-01 X 1748728 1748728 G T ASMT Missense_Mutation p.R153L 0.85 tolerated(1) benign(0.01) TCGA-LN-A49Y-01 X 29301329 29301329 C A IL1RAPL1 Silent p.V119V 0.92 TCGA-LN-A49Y-01 X 32490336 32490336 G T DMD Missense_Mutation p.P965H 0.85 benign(0.061) TCGA-LN-A49Y-01 X 49958206 49958206 G C AKAP4 Missense_Mutation p.C386W 0.88 deleterious(0) probably_damaging(0.999) TCGA-LN-A49Y-01 X 79282340 79282340 C A TBX22 Silent p.T257T 0.94 TCGA-LN-A49Y-01 X 88008707 88008707 A G CPXCR1 Missense_Mutation p.R98G 0.95 tolerated(0.07) possibly_damaging(0.765) TCGA-LN-A4A1-01 10 11378438 11378438 A T CELF2 3'UTR 0.36 TCGA-LN-A4A1-01 10 13364865 13364865 G C SEPHS1 Missense_Mutation p.L312V 0.34 deleterious(0) probably_damaging(0.987) TCGA-LN-A4A1-01 10 15573108 15573108 C A ITGA8 Nonsense_Mutation p.E975* 0.44 TCGA-LN-A4A1-01 10 27537671 27537671 A T RP11-85G18.6 Intron 0.34 TCGA-LN-A4A1-01 10 28900777 28900777 A T WAC Missense_Mutation p.I455L 0.39 tolerated(0.13) benign(0.418) TCGA-LN-A4A1-01 10 44112021 44112021 A G ZNF485 Missense_Mutation p.H177R 0.39 tolerated(0.09) benign(0.001) TCGA-LN-A4A1-01 10 5791064 5791064 C G FAM208B Missense_Mutation p.P1894A 0.42 tolerated(0.18) benign(0.021) TCGA-LN-A4A1-01 11 47282123 47282123 C T NR1H3 Silent p.Y132Y 0.24 TCGA-LN-A4A1-01 11 47496971 47496971 T C CELF1 Missense_Mutation p.Y395C 0.44 deleterious(0) probably_damaging(0.994) TCGA-LN-A4A1-01 11 62123886 62123886 G A ASRGL1 Missense_Mutation p.A94T 0.46 deleterious(0.04) possibly_damaging(0.842) TCGA-LN-A4A1-01 11 62381901 62381901 T A ROM1 Missense_Mutation p.H254Q 0.58 deleterious(0.02) probably_damaging(0.998) TCGA-LN-A4A1-01 11 64627509 64627509 G A EHD1 Missense_Mutation p.R268C 0.34 deleterious(0.01) possibly_damaging(0.841) TCGA-LN-A4A1-01 11 64627713 64627713 A G EHD1 Missense_Mutation p.F200L 0.52 tolerated(0.08) benign(0.387) TCGA-LN-A4A1-01 11 67208477 67208477 G A CORO1B Intron 0.19 TCGA-LN-A4A1-01 11 77690104 77690104 T C INTS4 Missense_Mutation p.I137V 0.46 tolerated(0.4) possibly_damaging(0.839) TCGA-LN-A4A1-01 11 95724824 95724825 - A MAML2 Frame_Shift_Ins p.P735Sfs*46 0.35 TCGA-LN-A4A1-01 12 108923976 108923976 G A SART3 Missense_Mutation p.P620S 0.77 tolerated(0.73) benign(0.001) TCGA-LN-A4A1-01 12 10954348 10954348 A T TAS2R7 Silent p.A274A 0.14 TCGA-LN-A4A1-01 12 121647986 121647986 G T P2RX4 Missense_Mutation p.A7S 0.58 tolerated(0.61) benign(0.005) TCGA-LN-A4A1-01 12 46299425 46299425 A G ARID2 3'UTR 0.29 TCGA-LN-A4A1-01 12 49443467 49443471 GTTTG - KMT2D Frame_Shift_Del p.K1301Gfs*22 0.41 TCGA-LN-A4A1-01 12 5022461 5022461 C G KCNA1 3'UTR 0.36 TCGA-LN-A4A1-01 12 52681102 52681102 G C KRT81 Missense_Mutation p.S344C 0.23 tolerated(0.65) benign(0.008) TCGA-LN-A4A1-01 12 53800472 53800472 C T SP1 Silent p.P593P 0.48 TCGA-LN-A4A1-01 12 71032196 71032196 C T PTPRR 3'UTR 0.44 TCGA-LN-A4A1-01 13 103281862 103281862 A G TPP2 Silent p.V349V 0.54 TCGA-LN-A4A1-01 13 108863310 108863310 C A LIG4 Nonsense_Mutation p.G103* 0.25 TCGA-LN-A4A1-01 13 33338643 33338643 A G PDS5B Missense_Mutation p.M1179V 0.38 tolerated(1) benign(0.005) TCGA-LN-A4A1-01 13 73650715 73650715 A G KLF5 3'UTR 0.56 TCGA-LN-A4A1-01 14 105676789 105676789 G A BRF1 3'UTR 0.06 TCGA-LN-A4A1-01 14 20389443 20389443 G T OR4K5 Missense_Mutation p.W226C 0.23 deleterious(0.05) benign(0.005) TCGA-LN-A4A1-01 14 20389444 20389444 C T OR4K5 Missense_Mutation p.L227F 0.23 tolerated(0.52) benign(0.002) TCGA-LN-A4A1-01 14 24601457 24601457 T C FITM1 Missense_Mutation p.F102L 0.21 tolerated(0.81) benign(0.027) TCGA-LN-A4A1-01 14 57113980 57113980 A G TMEM260 Missense_Mutation p.Y630C 0.39 tolerated(0.06) benign(0.43) TCGA-LN-A4A1-01 14 60574805 60574805 C T PCNXL4 Intron 0.42 TCGA-LN-A4A1-01 14 68038605 68038605 G A PLEKHH1 Missense_Mutation p.R524Q 0.29 deleterious(0.02) probably_damaging(0.963) TCGA-LN-A4A1-01 14 79111726 79111726 G A NRXN3 5'UTR 0.21 TCGA-LN-A4A1-01 14 91804354 91804354 T C CCDC88C Missense_Mutation p.M349V 0.31 tolerated(0.88) possibly_damaging(0.728) TCGA-LN-A4A1-01 14 95932472 95932472 C A SYNE3 Missense_Mutation p.E141D 0.31 deleterious(0) probably_damaging(0.921) TCGA-LN-A4A1-01 15 20490509 20490509 G A CHEK2P2 RNA 0.16 TCGA-LN-A4A1-01 15 72958352 72958352 C T GOLGA6B Missense_Mutation p.L613F 0.17 tolerated(0.08) possibly_damaging(0.716) TCGA-LN-A4A1-01 15 81235410 81235410 A - KIAA1199 Frame_Shift_Del p.Q1275Rfs*14 0.33 TCGA-LN-A4A1-01 15 85345259 85345259 C G ZNF592 Missense_Mutation p.Q1147E 0.67 deleterious(0.01) benign(0.243) TCGA-LN-A4A1-01 15 99501298 99501298 G A IGF1R 3'UTR 0.79 TCGA-LN-A4A1-01 16 2415790 2415790 A G ABCA17P RNA 0.41 TCGA-LN-A4A1-01 16 396856 396856 G C AXIN1 Missense_Mutation p.S57W 0.35 deleterious(0.04) probably_damaging(0.998) TCGA-LN-A4A1-01 16 51173964 51173964 C A SALL1 Missense_Mutation p.M723I 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A4A1-01 16 67203680 67203680 T C HSF4 Missense_Mutation p.S491P 0.07 deleterious_low_confidence(0.05) possibly_damaging(0.724) TCGA-LN-A4A1-01 16 67911274 67911274 C T EDC4 Silent p.F202F 0.58 TCGA-LN-A4A1-01 16 81411245 81411245 A G GAN 3'UTR 0.69 TCGA-LN-A4A1-01 16 88694049 88694049 G A ZC3H18 Missense_Mutation p.V710I 0.48 tolerated_low_confidence(0.09) unknown(0) TCGA-LN-A4A1-01 17 41004906 41004906 C G AOC3 Missense_Mutation p.L516V 0.69 deleterious(0) probably_damaging(0.963) TCGA-LN-A4A1-01 17 49825063 49825063 C T CA10 Missense_Mutation p.R132Q 0.13 tolerated(0.08) probably_damaging(0.998) TCGA-LN-A4A1-01 17 62892916 62892916 G T LRRC37A3 Missense_Mutation p.P154T 0.38 tolerated(0.15) benign(0.004) TCGA-LN-A4A1-01 17 65989212 65989213 - A C17orf58 Frame_Shift_Ins p.M17Ifs*11 0.44 TCGA-LN-A4A1-01 17 67016582 67016582 T C ABCA9 Missense_Mutation p.I849M 0.53 tolerated(0.46) benign(0.069) TCGA-LN-A4A1-01 17 7578457 7578457 C A TP53 Missense_Mutation p.R158L 0.56 deleterious(0) probably_damaging(0.986) TCGA-LN-A4A1-01 19 10439506 10439506 T G RAVER1 Missense_Mutation p.K207Q 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-LN-A4A1-01 19 12910723 12910723 T A PRDX2 Missense_Mutation p.E154V 0.42 deleterious(0) possibly_damaging(0.865) TCGA-LN-A4A1-01 19 1925459 1925459 G A SCAMP4 3'UTR 0.32 TCGA-LN-A4A1-01 19 36507004 36507004 C G CLIP3 3'UTR 0.52 TCGA-LN-A4A1-01 19 54617971 54617971 C T TFPT Missense_Mutation p.V45M 0.54 deleterious(0) probably_damaging(0.977) TCGA-LN-A4A1-01 19 58153099 58153099 C A ZNF211 Missense_Mutation p.H480Q 0.68 deleterious(0) benign(0.213) TCGA-LN-A4A1-01 19 7622121 7622121 C T PNPLA6 Silent p.P1126P 0.45 TCGA-LN-A4A1-01 1 10715742 10715742 G A CASZ1 Silent p.H543H 0.33 TCGA-LN-A4A1-01 1 11980144 11980144 T C KIAA2013 3'UTR 0.36 TCGA-LN-A4A1-01 1 152005018 152005018 T C S100A11 3'UTR 0.14 TCGA-LN-A4A1-01 1 153610909 153610909 A G CHTOP Silent p.A68A 0.17 TCGA-LN-A4A1-01 1 180082049 180082049 A T CEP350 3'UTR 0.17 TCGA-LN-A4A1-01 1 20519588 20519588 A G UBXN10 3'UTR 0.43 TCGA-LN-A4A1-01 1 207872577 207872577 G T CR1L Nonsense_Mutation p.G396* 0.43 TCGA-LN-A4A1-01 1 220936256 220936256 C T MARC2 Missense_Mutation p.A205V 0.48 tolerated(0.05) probably_damaging(0.971) TCGA-LN-A4A1-01 1 23519984 23519984 G C HTR1D Missense_Mutation p.H243Q 0.20 tolerated(0.73) benign(0.004) TCGA-LN-A4A1-01 1 236730087 236730087 G C HEATR1 Missense_Mutation p.H1389Q 0.53 deleterious(0) probably_damaging(0.995) TCGA-LN-A4A1-01 1 2979294 2979294 C T LINC00982 RNA 0.16 TCGA-LN-A4A1-01 1 40981183 40981183 A G EXO5 Missense_Mutation p.M323V 0.41 tolerated(0.34) benign(0.002) TCGA-LN-A4A1-01 1 41300749 41300749 G A KCNQ4 Missense_Mutation p.R575Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A1-01 1 53372051 53372051 T C ECHDC2 Intron 0.41 TCGA-LN-A4A1-01 1 65268698 65268698 A G RAVER2 Missense_Mutation p.N382S 0.26 tolerated(0.23) benign(0.031) TCGA-LN-A4A1-01 1 70716996 70716996 A G SRSF11 3'UTR 0.27 TCGA-LN-A4A1-01 20 14306311 14306311 T C FLRT3 Missense_Mutation p.I614M 0.22 deleterious(0) probably_damaging(0.984) TCGA-LN-A4A1-01 20 17639256 17639256 T A RRBP1 Nonsense_Mutation p.K203* 0.50 TCGA-LN-A4A1-01 20 33567245 33567245 G A MYH7B Silent p.E90E 0.21 TCGA-LN-A4A1-01 20 35827502 35827502 A T RPN2 Missense_Mutation p.E118V 0.43 deleterious(0) probably_damaging(0.962) TCGA-LN-A4A1-01 20 36146397 36146397 G T BLCAP 3'UTR 0.31 TCGA-LN-A4A1-01 20 43052981 43052981 T C HNF4A Intron 0.33 TCGA-LN-A4A1-01 20 47991182 47991182 G A KCNB1 Silent p.L305L 0.30 TCGA-LN-A4A1-01 20 60498649 60498649 C A CDH4 Silent p.P505P 0.16 TCGA-LN-A4A1-01 20 62196935 62196935 G A HELZ2 Silent p.D1080D 0.27 TCGA-LN-A4A1-01 22 24627486 24627486 G T GGT5 Missense_Mutation p.T256K 0.26 deleterious(0.04) probably_damaging(0.95) TCGA-LN-A4A1-01 22 27008042 27008042 G A CRYBB1 Missense_Mutation p.A98V 0.17 deleterious(0.02) benign(0.007) TCGA-LN-A4A1-01 22 36690174 36690174 C T MYH9 Silent p.V1267V 0.41 TCGA-LN-A4A1-01 22 40662289 40662289 C T TNRC6B Silent p.A685A 0.27 TCGA-LN-A4A1-01 2 125284959 125284959 C A CNTNAP5 Missense_Mutation p.D524E 0.49 deleterious(0) probably_damaging(0.997) TCGA-LN-A4A1-01 2 128712725 128712725 T C SAP130 Missense_Mutation p.I779V 0.29 tolerated_low_confidence(0.33) unknown(0) TCGA-LN-A4A1-01 2 168811130 168811130 T G STK39 3'UTR 0.54 TCGA-LN-A4A1-01 2 170027101 170027101 A G LRP2 Silent p.H3780H 0.67 TCGA-LN-A4A1-01 2 172378944 172378944 A C CYBRD1 5'UTR 0.53 TCGA-LN-A4A1-01 2 179345554 179345554 C A PLEKHA3 5'UTR 0.21 TCGA-LN-A4A1-01 2 202593784 202593784 T C ALS2 Silent p.G901G 0.54 TCGA-LN-A4A1-01 2 203420310 203420310 A G BMPR2 Missense_Mutation p.H641R 0.30 tolerated(0.48) benign(0.055) TCGA-LN-A4A1-01 2 32531489 32531489 T G YIPF4 3'UTR 0.37 TCGA-LN-A4A1-01 2 61009902 61009902 A G PAPOLG Missense_Mutation p.Y370C 0.33 deleterious(0) probably_damaging(0.975) TCGA-LN-A4A1-01 2 61149071 61149071 C T REL Missense_Mutation p.R421C 0.33 tolerated_low_confidence(0.23) benign(0.007) TCGA-LN-A4A1-01 2 62998478 62998478 C A EHBP1 Missense_Mutation p.P88H 0.34 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A1-01 2 79253229 79253229 C G REG3G Missense_Mutation p.P4A 0.39 tolerated(0.11) benign(0.005) TCGA-LN-A4A1-01 2 79253939 79253939 A T REG3G Missense_Mutation p.K59N 0.46 deleterious(0.01) probably_damaging(0.988) TCGA-LN-A4A1-01 2 86440334 86440334 A G MRPL35 3'UTR 0.33 TCGA-LN-A4A1-01 2 95940353 95940353 T A PROM2 Missense_Mutation p.L7Q 0.22 deleterious_low_confidence(0) possibly_damaging(0.766) TCGA-LN-A4A1-01 3 138400822 138400822 C T PIK3CB Missense_Mutation p.G831S 0.11 deleterious(0) benign(0.314) TCGA-LN-A4A1-01 3 138724597 138724597 C T PRR23A Missense_Mutation p.A172T 0.31 tolerated(0.22) possibly_damaging(0.532) TCGA-LN-A4A1-01 3 142028884 142028884 T A XRN1 3'UTR 0.55 TCGA-LN-A4A1-01 3 152181097 152181097 A G MBNL1 3'UTR 0.26 TCGA-LN-A4A1-01 3 165548781 165548781 A T BCHE Missense_Mutation p.F14Y 0.17 tolerated(0.39) benign(0.079) TCGA-LN-A4A1-01 3 194061764 194061764 C T CPN2 3'UTR 0.46 TCGA-LN-A4A1-01 3 47469124 47469124 C T SCAP Silent p.L148L 0.14 TCGA-LN-A4A1-01 3 97592034 97592034 C G CRYBG3 Missense_Mutation p.L666V 0.21 TCGA-LN-A4A1-01 4 110624546 110624546 G A CASP6 Silent p.S2S 0.47 TCGA-LN-A4A1-01 4 123258086 123258086 A G KIAA1109 Missense_Mutation p.M4021V 0.61 benign(0.004) TCGA-LN-A4A1-01 4 155665738 155665738 G A LRAT Missense_Mutation p.R87H 0.80 tolerated(0.58) benign(0.025) TCGA-LN-A4A1-01 4 42425657 42425657 C G ATP8A1 Silent p.L1063L 0.75 TCGA-LN-A4A1-01 4 46736923 46736923 T C COX7B2 3'UTR 0.59 TCGA-LN-A4A1-01 4 68812229 68812229 A G TMPRSS11A Silent p.I24I 0.33 TCGA-LN-A4A1-01 5 133537546 133537546 T C PPP2CA Missense_Mutation p.D160G 0.29 tolerated(0.05) benign(0.035) TCGA-LN-A4A1-01 5 13700767 13700767 T A DNAH5 Missense_Mutation p.I4569F 0.28 possibly_damaging(0.537) TCGA-LN-A4A1-01 5 1393616 1393616 G A SLC6A3 3'UTR 0.39 TCGA-LN-A4A1-01 5 140168121 140168121 C A PCDHA1 Nonsense_Mutation p.S749* 0.38 TCGA-LN-A4A1-01 5 54771153 54771153 T C PPAP2A Intron 0.42 TCGA-LN-A4A1-01 5 55110956 55110956 C T DDX4 Missense_Mutation p.S648L 0.31 deleterious(0.02) benign(0.409) TCGA-LN-A4A1-01 5 79095254 79095254 G C CMYA5 Missense_Mutation p.V4009L 0.35 probably_damaging(0.98) TCGA-LN-A4A1-01 5 89948338 89948338 G A GPR98 Missense_Mutation p.E1198K 0.33 possibly_damaging(0.636) TCGA-LN-A4A1-01 5 93990336 93990336 A G ANKRD32 Missense_Mutation p.K345R 0.11 tolerated(0.18) possibly_damaging(0.467) TCGA-LN-A4A1-01 5 96098065 96098065 C T CAST Missense_Mutation p.R600C 0.26 deleterious(0) possibly_damaging(0.84) TCGA-LN-A4A1-01 6 117609724 117609724 A T ROS1 Silent p.P2325P 0.24 TCGA-LN-A4A1-01 6 161152209 161152209 T G PLG Silent p.V461V 0.21 TCGA-LN-A4A1-01 6 170154006 170154006 A G ERMARD Missense_Mutation p.Y18C 0.50 deleterious(0) probably_damaging(0.935) TCGA-LN-A4A1-01 6 17781431 17781431 T C KIF13A Missense_Mutation p.I1216V 0.15 deleterious(0.01) probably_damaging(0.996) TCGA-LN-A4A1-01 6 25983525 25983525 C G TRIM38 Silent p.V336V 0.30 TCGA-LN-A4A1-01 6 28056940 28056954 AGCTCAGATCTTACT - ZNF165 In_Frame_Del p.S384_T388del 0.40 TCGA-LN-A4A1-01 6 33264024 33264024 G C RGL2 Missense_Mutation p.D183E 0.45 tolerated(1) probably_damaging(0.937) TCGA-LN-A4A1-01 6 33367865 33367865 T C KIFC1 Intron 0.22 TCGA-LN-A4A1-01 6 33663775 33663775 T C ITPR3 3'UTR 0.41 TCGA-LN-A4A1-01 6 42824919 42824919 G T GLTSCR1L Silent p.L733L 0.41 TCGA-LN-A4A1-01 6 42824920 42824920 C T GLTSCR1L Missense_Mutation p.L734F 0.41 deleterious(0) probably_damaging(0.91) TCGA-LN-A4A1-01 6 44199101 44199101 G T SLC29A1 Missense_Mutation p.G256V 0.41 tolerated(0.08) possibly_damaging(0.869) TCGA-LN-A4A1-01 6 54735248 54735248 C G FAM83B Silent p.V68V 0.50 TCGA-LN-A4A1-01 6 73904443 73904443 T C KCNQ5 Missense_Mutation p.F721S 0.25 tolerated(0.4) benign(0.008) TCGA-LN-A4A1-01 7 123264623 123264623 C A ASB15 Missense_Mutation p.A151D 0.83 deleterious(0) probably_damaging(0.983) TCGA-LN-A4A1-01 7 141491086 141491086 A G TAS2R5 3'UTR 0.23 TCGA-LN-A4A1-01 7 141799444 141799444 A G MGAM Missense_Mutation p.K1698R 0.56 tolerated(0.6) benign(0.003) TCGA-LN-A4A1-01 7 143453646 143453646 T C CTAGE6 Missense_Mutation p.E369G 0.06 deleterious(0.01) probably_damaging(0.929) TCGA-LN-A4A1-01 7 149468160 149468160 G C ZNF467 5'UTR 0.32 TCGA-LN-A4A1-01 7 2473654 2473655 - T CHST12 3'UTR 0.22 TCGA-LN-A4A1-01 7 30661051 30661051 G T GARS Missense_Mutation p.D468Y 0.31 deleterious(0) probably_damaging(0.923) TCGA-LN-A4A1-01 7 31121353 31121353 C G ADCYAP1R1 Missense_Mutation p.N104K 0.29 tolerated(0.64) benign(0.003) TCGA-LN-A4A1-01 7 38725392 38725392 G T FAM183B Missense_Mutation p.H72N 0.36 deleterious(0.01) possibly_damaging(0.873) TCGA-LN-A4A1-01 7 63537695 63537695 G A ZNF727 Missense_Mutation p.D90N 0.36 tolerated(0.42) probably_damaging(0.959) TCGA-LN-A4A1-01 7 7713025 7713025 C A RPA3 Intron 0.27 TCGA-LN-A4A1-01 7 82580258 82580258 A C PCLO Missense_Mutation p.L3216V 0.39 unknown(0) TCGA-LN-A4A1-01 7 84670056 84670056 C G SEMA3D Missense_Mutation p.D327H 0.23 deleterious(0) probably_damaging(1) TCGA-LN-A4A1-01 7 92099372 92099372 G A ERVW-1 Silent p.Y108Y 0.32 TCGA-LN-A4A1-01 7 92206427 92206427 G A FAM133B Missense_Mutation p.S152L 0.49 tolerated_low_confidence(0.06) unknown(0) TCGA-LN-A4A1-01 7 99758410 99758410 C T GAL3ST4 Missense_Mutation p.R201H 0.08 deleterious(0.02) benign(0.049) TCGA-LN-A4A1-01 8 110466969 110466969 C T PKHD1L1 Silent p.S2254S 0.06 TCGA-LN-A4A1-01 8 143998573 143998573 C T CYP11B2 Silent p.K99K 0.10 TCGA-LN-A4A1-01 8 21977925 21977925 G C HR Missense_Mutation p.S902R 0.44 tolerated(0.16) benign(0.104) TCGA-LN-A4A1-01 8 38871570 38871570 A G ADAM9 Intron 0.50 TCGA-LN-A4A1-01 8 93017523 93017523 G T RUNX1T1 Silent p.A198A 0.24 TCGA-LN-A4A1-01 9 132816283 132816283 C T GPR107 Silent p.L24L 0.27 TCGA-LN-A4A1-01 9 139407900 139407900 C G NOTCH1 Missense_Mutation p.G766A 0.50 tolerated(0.08) probably_damaging(0.997) TCGA-LN-A4A1-01 9 139407924 139407925 TC - NOTCH1 Frame_Shift_Del p.E758Ifs*50 0.37 TCGA-LN-A4A1-01 9 139890207 139890207 C G CLIC3 Silent p.A12A 0.73 TCGA-LN-A4A1-01 9 35807138 35807138 A T NPR2 Missense_Mutation p.M880L 0.47 tolerated(0.69) benign(0.034) TCGA-LN-A4A1-01 9 6986499 6986499 G A KDM4C Missense_Mutation p.E504K 0.62 tolerated(1) benign(0) TCGA-LN-A4A1-01 X 109419275 109419275 T C TMEM164 3'UTR 0.80 TCGA-LN-A4A1-01 X 1409389 1409389 C G CSF2RA Missense_Mutation p.D211E 0.16 tolerated(0.29) possibly_damaging(0.569) TCGA-LN-A4A1-01 X 65259808 65259808 C T VSIG4 Silent p.G11G 0.81 TCGA-LN-A4A1-01 X 69594099 69594099 A T KIF4A Missense_Mutation p.Q591H 0.63 deleterious(0.01) benign(0.077) TCGA-LN-A4A1-01 X 84363348 84363348 G T SATL1 Missense_Mutation p.S209R 0.54 deleterious(0.02) possibly_damaging(0.504) TCGA-LN-A4A1-01 X 84363349 84363349 C T SATL1 Missense_Mutation p.S209N 0.54 tolerated(0.23) benign(0.383) TCGA-LN-A4A2-01 10 126097158 126097158 T C OAT Missense_Mutation p.Y158C 0.28 tolerated(0.06) benign(0.343) TCGA-LN-A4A2-01 10 43869150 43869150 G A FXYD4 5'UTR 0.31 TCGA-LN-A4A2-01 10 46322367 46322367 T C AGAP4 Missense_Mutation p.T330A 0.34 tolerated(1) benign(0.001) TCGA-LN-A4A2-01 10 51584855 51584855 G C NCOA4 Missense_Mutation p.E334D 0.20 tolerated(0.15) possibly_damaging(0.74) TCGA-LN-A4A2-01 10 75758009 75758009 C T VCL Missense_Mutation p.P15L 0.27 deleterious(0) probably_damaging(1) TCGA-LN-A4A2-01 11 118661613 118661613 C T DDX6 Intron 0.27 TCGA-LN-A4A2-01 11 27523398 27523398 T C LIN7C Missense_Mutation p.Q36R 0.07 tolerated(0.19) benign(0.428) TCGA-LN-A4A2-01 11 55110883 55110883 C A OR4A16 Silent p.A69A 0.15 TCGA-LN-A4A2-01 11 57147010 57147010 C T PRG3 Missense_Mutation p.R111H 0.24 tolerated(0.54) benign(0.001) TCGA-LN-A4A2-01 11 58170410 58170410 G A OR5B3 Missense_Mutation p.T158I 0.17 tolerated_low_confidence(0.46) benign(0.03) TCGA-LN-A4A2-01 11 6007674 6007674 C T OR52L1 Missense_Mutation p.G163R 0.28 deleterious(0) probably_damaging(0.989) TCGA-LN-A4A2-01 11 617432 617432 G A CDHR5 Silent p.S819S 0.24 TCGA-LN-A4A2-01 11 69467865 69467865 T C CCND1 3'UTR 0.05 TCGA-LN-A4A2-01 11 75277524 75277524 G A SERPINH1 Missense_Mutation p.A44T 0.35 deleterious(0.02) probably_damaging(0.96) TCGA-LN-A4A2-01 12 113440810 113440810 G C OAS2 Missense_Mutation p.C361S 0.11 tolerated(0.77) benign(0) TCGA-LN-A4A2-01 12 122958783 122958783 A C ZCCHC8 Missense_Mutation p.F462C 0.17 deleterious(0.01) possibly_damaging(0.541) TCGA-LN-A4A2-01 12 123346457 123346457 G A HIP1R 3'UTR 0.15 TCGA-LN-A4A2-01 12 129278578 129278578 C T SLC15A4 3'UTR 0.16 TCGA-LN-A4A2-01 12 21628683 21628683 C A RECQL Missense_Mutation p.G342V 0.62 tolerated(0.1) possibly_damaging(0.632) TCGA-LN-A4A2-01 12 3757653 3757653 C T EFCAB4B Intron 0.14 TCGA-LN-A4A2-01 12 53292281 53292281 T A KRT8 Missense_Mutation p.M437L 0.14 tolerated(0.31) benign(0.018) TCGA-LN-A4A2-01 12 8542937 8542937 C A LINC00937 RNA 0.18 TCGA-LN-A4A2-01 12 92818799 92818799 C A CLLU1 Missense_Mutation p.Q115K 0.13 benign(0.095) TCGA-LN-A4A2-01 13 32954213 32954213 C T BRCA2 Missense_Mutation p.P3063S 0.20 deleterious(0.04) benign(0.217) TCGA-LN-A4A2-01 14 105404775 105404775 T C AHNAK2 Silent p.R5671R 0.20 TCGA-LN-A4A2-01 14 20482510 20482510 T C OR4K14 Silent p.P281P 0.26 TCGA-LN-A4A2-01 14 45644391 45644391 C G FANCM Missense_Mutation p.H812D 0.10 tolerated(0.13) benign(0.035) TCGA-LN-A4A2-01 14 50249303 50249303 C T KLHDC2 Missense_Mutation p.S363F 0.13 deleterious(0) probably_damaging(0.997) TCGA-LN-A4A2-01 14 71209128 71209128 C A MAP3K9 Missense_Mutation p.G503C 0.24 deleterious(0) probably_damaging(0.988) TCGA-LN-A4A2-01 14 74083849 74083849 C G ACOT6 5'UTR 0.38 TCGA-LN-A4A2-01 14 89124637 89124637 G A EML5 Silent p.G1257G 0.14 TCGA-LN-A4A2-01 15 35148927 35148927 T C AQR 3'UTR 0.14 TCGA-LN-A4A2-01 15 44158510 44158510 A C WDR76 Missense_Mutation p.M601L 0.18 tolerated(0.24) benign(0.004) TCGA-LN-A4A2-01 15 44846786 44846786 A G EIF3J Silent p.P110P 0.22 TCGA-LN-A4A2-01 15 75692462 75692462 C A SIN3A Missense_Mutation p.W591C 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A4A2-01 16 12162928 12162928 A G SNX29 Missense_Mutation p.S420G 0.27 deleterious(0.03) benign(0.003) TCGA-LN-A4A2-01 16 23706340 23706340 C T ERN2 Missense_Mutation p.V682M 0.25 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A2-01 16 27079902 27079902 C A C16orf82 RNA 0.27 TCGA-LN-A4A2-01 16 28620538 28620538 G C SULT1A1 Intron 0.12 TCGA-LN-A4A2-01 16 30129094 30129094 C T MAPK3 Silent p.K224K 0.23 TCGA-LN-A4A2-01 16 30721919 30721919 A T SRCAP Intron 0.20 TCGA-LN-A4A2-01 16 31091869 31091869 G A ZNF646 Silent p.A1408A 0.32 TCGA-LN-A4A2-01 17 10408304 10408304 G T MYH1 Missense_Mutation p.F838L 0.51 deleterious(0.01) probably_damaging(0.997) TCGA-LN-A4A2-01 17 11985228 11985228 C T MAP2K4 Intron 0.14 TCGA-LN-A4A2-01 17 35872295 35872295 A T DUSP14 5'UTR 0.12 TCGA-LN-A4A2-01 17 3910023 3910023 C T ZZEF1 3'UTR 0.16 TCGA-LN-A4A2-01 17 41926113 41926113 C A CD300LG Silent p.G77G 0.19 TCGA-LN-A4A2-01 17 55123062 55123062 G A RNF126P1 RNA 0.12 TCGA-LN-A4A2-01 17 56569953 56569953 C T MTMR4 Missense_Mutation p.R1110H 0.26 deleterious(0) probably_damaging(1) TCGA-LN-A4A2-01 17 57742246 57742246 A T CLTC Missense_Mutation p.E540D 0.17 tolerated(0.31) possibly_damaging(0.73) TCGA-LN-A4A2-01 17 65905779 65905779 C T BPTF Missense_Mutation p.P965L 0.12 benign(0.005) TCGA-LN-A4A2-01 17 73729646 73729654 GCCGTGCTC - ITGB4 In_Frame_Del p.K510_S513delinsN 0.14 TCGA-LN-A4A2-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.21 tolerated(0.1) benign(0.438) TCGA-LN-A4A2-01 17 7578556 7578556 T A TP53 Splice_Site p.X126_splice 0.43 TCGA-LN-A4A2-01 17 79977072 79977072 C T STRA13 3'UTR 0.17 TCGA-LN-A4A2-01 17 9760839 9760839 C T GLP2R Silent p.N237N 0.17 TCGA-LN-A4A2-01 18 14784464 14784464 T A ANKRD30B Silent p.P534P 0.17 TCGA-LN-A4A2-01 18 211238 211238 A G USP14 Missense_Mutation p.Y480C 0.17 deleterious(0) probably_damaging(0.952) TCGA-LN-A4A2-01 18 30260215 30260215 T C KLHL14 Missense_Mutation p.Q502R 0.20 tolerated(0.06) probably_damaging(0.932) TCGA-LN-A4A2-01 18 31319646 31319646 A T ASXL3 Missense_Mutation p.I760L 0.17 benign(0) TCGA-LN-A4A2-01 18 34298061 34298061 C T FHOD3 Missense_Mutation p.R759W 0.21 deleterious(0) probably_damaging(0.997) TCGA-LN-A4A2-01 19 10610154 10610154 C T KEAP1 Missense_Mutation p.G186S 0.16 deleterious(0) probably_damaging(1) TCGA-LN-A4A2-01 19 11537524 11537524 C A CCDC151 Silent p.L231L 0.43 TCGA-LN-A4A2-01 19 12222271 12222271 G T ZNF788 5'UTR 0.21 TCGA-LN-A4A2-01 19 12995819 12995819 C T KLF1 Silent p.S323S 0.15 TCGA-LN-A4A2-01 19 17119359 17119359 C A CPAMD8 Missense_Mutation p.G219V 0.17 deleterious(0) probably_damaging(0.972) TCGA-LN-A4A2-01 19 1809675 1809675 C T ATP8B3 Silent p.K123K 0.24 TCGA-LN-A4A2-01 19 18553771 18553771 G A ELL 3'UTR 0.29 TCGA-LN-A4A2-01 19 19368619 19368619 T C HAPLN4 3'UTR 0.17 TCGA-LN-A4A2-01 19 21265121 21265121 C A ZNF714 5'UTR 0.18 TCGA-LN-A4A2-01 19 3005571 3005571 C A TLE2 Missense_Mutation p.G587V 0.21 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A2-01 19 36632053 36632053 G A CAPNS1 Missense_Mutation p.G47D 0.32 deleterious_low_confidence(0.03) probably_damaging(0.931) TCGA-LN-A4A2-01 19 53014266 53014266 A T ZNF578 Missense_Mutation p.N211I 0.15 tolerated(0.08) possibly_damaging(0.885) TCGA-LN-A4A2-01 19 54377333 54377333 G T MYADM Missense_Mutation p.A184S 0.29 deleterious(0) probably_damaging(0.994) TCGA-LN-A4A2-01 19 57955022 57955022 A G ZNF749 Missense_Mutation p.Q169R 0.24 deleterious(0.05) benign(0.403) TCGA-LN-A4A2-01 19 6751205 6751205 C T TRIP10 Nonsense_Mutation p.R541* 0.21 TCGA-LN-A4A2-01 19 9073177 9073177 G A MUC16 Missense_Mutation p.P4757S 0.25 unknown(0) TCGA-LN-A4A2-01 19 9324685 9324685 T G OR7D4 Missense_Mutation p.M277L 0.16 deleterious(0.05) benign(0.107) TCGA-LN-A4A2-01 1 102312449 102312449 T A OLFM3 Intron 0.24 TCGA-LN-A4A2-01 1 103354301 103354301 G - COL11A1 Frame_Shift_Del p.P1511Qfs*76 0.13 TCGA-LN-A4A2-01 1 11105562 11105562 C T MASP2 Silent p.A149A 0.20 TCGA-LN-A4A2-01 1 12008070 12008070 C T PLOD1 Silent p.T38T 0.23 TCGA-LN-A4A2-01 1 145787778 145787778 A C GPR89A Missense_Mutation p.I301M 0.21 tolerated(0.24) benign(0.078) TCGA-LN-A4A2-01 1 146658413 146658413 G C FMO5 3'UTR 0.16 TCGA-LN-A4A2-01 1 150783607 150783607 G A ARNT 3'UTR 0.13 TCGA-LN-A4A2-01 1 152281346 152281346 C T FLG Missense_Mutation p.G2006R 0.08 probably_damaging(0.988) TCGA-LN-A4A2-01 1 153945466 153945468 AAG - CREB3L4 In_Frame_Del p.K220del 0.11 TCGA-LN-A4A2-01 1 158815756 158815756 C A MNDA Missense_Mutation p.S317Y 0.25 deleterious(0) probably_damaging(0.993) TCGA-LN-A4A2-01 1 166039399 166039399 T C FAM78B 3'UTR 0.30 TCGA-LN-A4A2-01 1 175066783 175066783 C T TNN Nonsense_Mutation p.R607* 0.13 TCGA-LN-A4A2-01 1 178006918 178006918 G A RP11-568K15.1 RNA 0.24 TCGA-LN-A4A2-01 1 202913041 202913041 A G ADIPOR1 Missense_Mutation p.M217T 0.10 deleterious(0.02) benign(0.223) TCGA-LN-A4A2-01 1 20987472 20987472 T A DDOST Missense_Mutation p.E73V 0.32 tolerated(0.08) benign(0.053) TCGA-LN-A4A2-01 1 210334142 210334142 C T SYT14 Missense_Mutation p.R539C 0.20 tolerated(0.24) benign(0.347) TCGA-LN-A4A2-01 1 21929326 21929326 G C RAP1GAP Missense_Mutation p.I567M 0.08 tolerated(0.06) probably_damaging(0.994) TCGA-LN-A4A2-01 1 227935746 227935746 G C SNAP47 Silent p.L148L 0.37 TCGA-LN-A4A2-01 1 228434246 228434246 G T OBSCN Missense_Mutation p.A1351S 0.19 probably_damaging(0.94) TCGA-LN-A4A2-01 1 232575095 232575095 C T SIPA1L2 Missense_Mutation p.D1264N 0.14 deleterious(0) possibly_damaging(0.703) TCGA-LN-A4A2-01 1 240370836 240370836 G T FMN2 Silent p.L908L 0.13 TCGA-LN-A4A2-01 1 242159683 242159683 G A MAP1LC3C Missense_Mutation p.R76C 0.22 deleterious(0) benign(0.19) TCGA-LN-A4A2-01 1 36020037 36020037 T C KIAA0319L Missense_Mutation p.Y19C 0.28 tolerated_low_confidence(0.14) benign(0.115) TCGA-LN-A4A2-01 1 46035590 46035590 G T AKR1A1 Missense_Mutation p.A314S 0.16 tolerated(0.27) benign(0.002) TCGA-LN-A4A2-01 1 47684909 47684909 G A TAL1 3'UTR 0.30 TCGA-LN-A4A2-01 1 54640384 54640384 C T CYB5RL Missense_Mutation p.A286T 0.25 tolerated(0.25) benign(0.06) TCGA-LN-A4A2-01 1 58993006 58993006 T C OMA1 Missense_Mutation p.Y381C 0.18 deleterious(0) probably_damaging(0.928) TCGA-LN-A4A2-01 1 6294509 6294509 G A ICMT Intron 0.30 TCGA-LN-A4A2-01 1 75038188 75038188 G C C1orf173 Missense_Mutation p.S1069C 0.20 deleterious(0.01) benign(0.247) TCGA-LN-A4A2-01 1 76228511 76228511 A T ACADM 3'Flank 0.23 TCGA-LN-A4A2-01 20 2641145 2641145 T C IDH3B Missense_Mutation p.K208R 0.21 tolerated(0.06) possibly_damaging(0.79) TCGA-LN-A4A2-01 20 3143660 3143660 G - LZTS3 3'UTR 0.22 TCGA-LN-A4A2-01 20 36982828 36982828 G A LBP Silent p.S171S 0.18 TCGA-LN-A4A2-01 20 37076786 37076786 A T SNHG11 Intron 0.14 TCGA-LN-A4A2-01 20 39800921 39800922 - G PLCG1 Frame_Shift_Ins p.D966Efs*2 0.17 TCGA-LN-A4A2-01 20 45017766 45017766 C G ELMO2 Missense_Mutation p.D113H 0.19 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A2-01 20 47538534 47538534 C T ARFGEF2 Silent p.C36C 0.17 TCGA-LN-A4A2-01 20 8741066 8741066 C T PLCB1 Missense_Mutation p.A890V 0.16 tolerated(0.17) benign(0.001) TCGA-LN-A4A2-01 21 37748463 37748463 A G MORC3 3'UTR 0.19 TCGA-LN-A4A2-01 21 45949798 45949798 C T TSPEAR Missense_Mutation p.A225T 0.13 deleterious(0) possibly_damaging(0.9) TCGA-LN-A4A2-01 22 20819524 20819524 G A KLHL22 Missense_Mutation p.R245W 0.07 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A2-01 22 39428331 39428331 C G APOBEC3D 3'UTR 0.14 TCGA-LN-A4A2-01 22 46652641 46652641 C T PKDREJ Missense_Mutation p.M2193I 0.54 tolerated(0.46) benign(0.017) TCGA-LN-A4A2-01 22 46726517 46726517 C T GTSE1 3'UTR 0.50 TCGA-LN-A4A2-01 22 50722580 50722589 ATTCTTGCCG - PLXNB2 Frame_Shift_Del p.Y745* 0.61 TCGA-LN-A4A2-01 2 128370116 128370116 C T MYO7B Silent p.P1086P 0.22 TCGA-LN-A4A2-01 2 136579638 136579638 C T LCT Missense_Mutation p.G313E 0.18 deleterious(0) probably_damaging(0.984) TCGA-LN-A4A2-01 2 168101152 168101152 A G XIRP2 Missense_Mutation p.R1084G 0.20 benign(0.043) TCGA-LN-A4A2-01 2 179575994 179575994 G T TTN Silent p.A9323A 0.14 TCGA-LN-A4A2-01 2 190732645 190732645 A G PMS1 Silent p.K821K 0.20 TCGA-LN-A4A2-01 2 192863843 192863843 C A TMEFF2 Nonsense_Mutation p.E210* 0.18 TCGA-LN-A4A2-01 2 206869439 206869439 G C INO80D Missense_Mutation p.L913V 0.11 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-LN-A4A2-01 2 207988643 207988643 A G KLF7 Silent p.S196S 0.26 TCGA-LN-A4A2-01 2 211541847 211541847 T C CPS1 Missense_Mutation p.L1470P 0.14 deleterious(0) probably_damaging(0.929) TCGA-LN-A4A2-01 2 219259680 219259680 C A SLC11A1 Silent p.T525T 0.11 TCGA-LN-A4A2-01 2 26350815 26350815 C T RAB10 Nonsense_Mutation p.R172* 0.23 TCGA-LN-A4A2-01 2 29150504 29150504 A G WDR43 Missense_Mutation p.I415V 0.27 tolerated(0.86) benign(0.001) TCGA-LN-A4A2-01 2 74701784 74701784 C T CCDC142 Silent p.P707P 0.18 TCGA-LN-A4A2-01 2 79384410 79384410 C A REG3A Missense_Mutation p.R157M 0.21 deleterious(0.03) benign(0.026) TCGA-LN-A4A2-01 2 90249310 90249310 C A IGKV1D-43 Missense_Mutation p.S89Y 0.16 deleterious(0.04) benign(0.324) TCGA-LN-A4A2-01 2 96858916 96858916 C A STARD7 Intron 0.17 TCGA-LN-A4A2-01 2 96934312 96934312 G C CIAO1 Missense_Mutation p.D203H 0.15 deleterious(0.02) probably_damaging(1) TCGA-LN-A4A2-01 3 112253120 112253120 G A ATG3 Missense_Mutation p.H287Y 0.24 deleterious(0.02) benign(0.33) TCGA-LN-A4A2-01 3 113025140 113025140 G A WDR52 Nonsense_Mutation p.R1556* 0.13 TCGA-LN-A4A2-01 3 138183220 138183220 C T ESYT3 Nonsense_Mutation p.Q317* 0.18 TCGA-LN-A4A2-01 3 184009973 184009973 G A ECE2 Missense_Mutation p.G867S 0.14 tolerated(0.56) benign(0.027) TCGA-LN-A4A2-01 3 33060008 33060008 T G GLB1 Missense_Mutation p.S427R 0.22 tolerated(0.48) possibly_damaging(0.616) TCGA-LN-A4A2-01 3 49166737 49166737 G T LAMB2 Missense_Mutation p.S513R 0.18 deleterious(0) probably_damaging(1) TCGA-LN-A4A2-01 3 49867177 49867177 C T TRAIP Missense_Mutation p.G370D 0.20 tolerated(0.66) benign(0.048) TCGA-LN-A4A2-01 3 50927459 50927459 G A DOCK3 Silent p.G55G 0.36 TCGA-LN-A4A2-01 4 125631531 125631531 T C ANKRD50 Missense_Mutation p.S46G 0.20 tolerated_low_confidence(0.76) benign(0) TCGA-LN-A4A2-01 4 167656208 167656208 C G SPOCK3 Missense_Mutation p.S392T 0.24 deleterious(0) probably_damaging(0.995) TCGA-LN-A4A2-01 4 52861261 52861261 C T LRRC66 Missense_Mutation p.A643T 0.20 tolerated(0.17) benign(0.22) TCGA-LN-A4A2-01 5 100146563 100146563 T G ST8SIA4 3'UTR 0.25 TCGA-LN-A4A2-01 5 101583042 101583042 C T SLCO4C1 Silent p.A575A 0.21 TCGA-LN-A4A2-01 5 118576136 118576136 C T DMXL1 Missense_Mutation p.L2871F 0.30 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A2-01 5 170163317 170163317 T A KCNIP1 3'Flank 0.27 TCGA-LN-A4A2-01 5 171614953 171614953 G T STK10 Missense_Mutation p.P32T 0.30 deleterious(0) probably_damaging(0.996) TCGA-LN-A4A2-01 5 176940721 176940721 C T DDX41 Missense_Mutation p.E355K 0.12 deleterious(0) probably_damaging(0.996) TCGA-LN-A4A2-01 5 23527403 23527403 C A PRDM9 Missense_Mutation p.L736I 0.16 tolerated(1) probably_damaging(0.954) TCGA-LN-A4A2-01 5 45261002 45261002 C A HCN1 3'UTR 0.20 TCGA-LN-A4A2-01 5 66448651 66448651 A G MAST4 Missense_Mutation p.Y1161C 0.19 probably_damaging(1) TCGA-LN-A4A2-01 6 116600515 116600515 C A TSPYL1 Missense_Mutation p.C160F 0.26 tolerated(0.42) benign(0.004) TCGA-LN-A4A2-01 6 129475680 129475680 G A LAMA2 Missense_Mutation p.C353Y 0.26 deleterious(0) probably_damaging(1) TCGA-LN-A4A2-01 6 133072386 133072386 G A VNN2 Silent p.C366C 0.33 TCGA-LN-A4A2-01 6 27841109 27841109 T A HIST1H4L Missense_Mutation p.K60N 0.25 deleterious(0) probably_damaging(0.974) TCGA-LN-A4A2-01 6 27841110 27841110 T C HIST1H4L Missense_Mutation p.K60R 0.23 tolerated(0.16) benign(0.146) TCGA-LN-A4A2-01 6 43146938 43146938 C T SRF 3'UTR 0.38 TCGA-LN-A4A2-01 6 63989979 63989979 C G LGSN Missense_Mutation p.E493Q 0.21 deleterious(0.01) possibly_damaging(0.517) TCGA-LN-A4A2-01 6 90459388 90459388 C T MDN1 Silent p.A1163A 0.41 TCGA-LN-A4A2-01 7 103143467 103143467 C A RELN Nonsense_Mutation p.G2829* 0.23 TCGA-LN-A4A2-01 7 104703927 104703927 A G KMT2E Missense_Mutation p.I106V 0.19 tolerated(0.05) benign(0.031) TCGA-LN-A4A2-01 7 105206037 105206037 C T EFCAB10 Missense_Mutation p.E137K 0.19 tolerated_low_confidence(0.13) possibly_damaging(0.807) TCGA-LN-A4A2-01 7 106897227 106897227 G A COG5 Nonsense_Mutation p.Q598* 0.14 TCGA-LN-A4A2-01 7 116201111 116201111 A G CAV1 3'UTR 0.19 TCGA-LN-A4A2-01 7 122635287 122635287 C G TAS2R16 Silent p.L134L 0.12 TCGA-LN-A4A2-01 7 123097574 123097574 G C IQUB Nonsense_Mutation p.S685* 0.08 TCGA-LN-A4A2-01 7 124386281 124386282 - A GPR37 3'UTR 0.16 TCGA-LN-A4A2-01 7 128802357 128802357 C A TSPAN33 Missense_Mutation p.Q95K 0.24 tolerated(0.92) benign(0.02) TCGA-LN-A4A2-01 7 141740561 141740561 G C MGAM Missense_Mutation p.E805Q 0.18 tolerated(0.35) benign(0.002) TCGA-LN-A4A2-01 7 37934120 37934120 G T NME8 Missense_Mutation p.K484N 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-LN-A4A2-01 7 63726929 63726929 C T ZNF679 Silent p.S306S 0.06 TCGA-LN-A4A2-01 7 64438393 64438393 T C ZNF117 3'UTR 0.19 TCGA-LN-A4A2-01 7 98256586 98256586 G A NPTX2 Missense_Mutation p.G333D 0.23 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A2-01 7 99170870 99170870 A G ZNF655 Missense_Mutation p.Y415C 0.33 deleterious(0.02) possibly_damaging(0.878) TCGA-LN-A4A2-01 8 109229586 109229586 C T EIF3E Missense_Mutation p.D276N 0.43 deleterious(0.03) benign(0.037) TCGA-LN-A4A2-01 8 133492507 133492507 G C KCNQ3 Silent p.T91T 0.22 TCGA-LN-A4A2-01 8 145059977 145059977 C G PARP10 Silent p.S116S 0.15 TCGA-LN-A4A2-01 8 30982124 30982124 G C WRN Missense_Mutation p.S906T 0.17 tolerated(0.27) benign(0.022) TCGA-LN-A4A2-01 8 55540391 55540391 C G RP1 Missense_Mutation p.Q1317E 0.22 tolerated(0.36) benign(0.004) TCGA-LN-A4A2-01 8 56651457 56651457 T A TMEM68 3'UTR 0.38 TCGA-LN-A4A2-01 8 65494794 65494794 G C BHLHE22 3'UTR 0.15 TCGA-LN-A4A2-01 8 67971544 67971544 C T COPS5 Missense_Mutation p.D94N 0.20 deleterious(0) probably_damaging(0.996) TCGA-LN-A4A2-01 8 95547194 95547194 A G KIAA1429 Silent p.C119C 0.28 TCGA-LN-A4A2-01 8 95942587 95942587 T C TP53INP1 3'UTR 0.10 TCGA-LN-A4A2-01 9 108127763 108127763 G C SLC44A1 Splice_Site p.X418_splice 0.36 TCGA-LN-A4A2-01 9 113636395 113636395 A - LPAR1 3'UTR 0.19 TCGA-LN-A4A2-01 9 117168862 117168862 G A DFNB31 Missense_Mutation p.A670V 0.54 tolerated(0.07) benign(0.065) TCGA-LN-A4A2-01 9 124914553 124914553 C A NDUFA8 Silent p.L62L 0.28 TCGA-LN-A4A2-01 9 131457744 131457744 G T SET 3'UTR 0.17 TCGA-LN-A4A2-01 9 134134513 134134513 C T FAM78A 3'UTR 0.07 TCGA-LN-A4A2-01 9 134501526 134501526 G A RAPGEF1 Silent p.Y496Y 0.30 TCGA-LN-A4A2-01 9 139621262 139621262 C T FAM69B 3'Flank 0.19 TCGA-LN-A4A2-01 9 34832891 34832891 C G FAM205B RNA 0.28 TCGA-LN-A4A2-01 9 40705844 40705844 C G SPATA31A3 Missense_Mutation p.I1167M 0.22 tolerated(1) probably_damaging(0.965) TCGA-LN-A4A2-01 9 5300025 5300025 G C RLN2 3'UTR 0.31 TCGA-LN-A4A2-01 9 69420323 69420323 G T ANKRD20A4 Missense_Mutation p.D405Y 0.13 deleterious(0.01) benign(0.432) TCGA-LN-A4A2-01 9 712721 712721 C G KANK1 Missense_Mutation p.T652S 0.47 deleterious(0.03) probably_damaging(0.912) TCGA-LN-A4A2-01 9 75404064 75404064 C A TMC1 Missense_Mutation p.A352D 0.62 deleterious(0.04) benign(0.101) TCGA-LN-A4A2-01 9 86583502 86583502 C A HNRNPK 3'UTR 0.12 TCGA-LN-A4A2-01 X 12995192 12995192 G A TMSB4X 3'UTR 0.29 TCGA-LN-A4A2-01 X 131337265 131337265 T C RAP2C 3'UTR 0.36 TCGA-LN-A4A2-01 X 140985578 140985578 C A MAGEC3 Missense_Mutation p.A631E 0.32 tolerated(0.07) benign(0.043) TCGA-LN-A4A2-01 X 32503127 32503127 G A DMD Silent p.P904P 0.62 TCGA-LN-A4A2-01 X 32503128 32503128 G T DMD Missense_Mutation p.P904H 0.62 probably_damaging(0.99) TCGA-LN-A4A2-01 X 99661679 99661679 C A PCDH19 Missense_Mutation p.E639D 0.55 tolerated(0.14) probably_damaging(0.956) TCGA-LN-A4A3-01 10 103901475 103901475 G T PPRC1 Silent p.V1070V 0.33 TCGA-LN-A4A3-01 10 1142270 1142270 G A WDR37 Intron 0.14 TCGA-LN-A4A3-01 10 128192578 128192578 G T C10orf90 Missense_Mutation p.S397R 0.22 tolerated(0.34) benign(0.022) TCGA-LN-A4A3-01 10 129902236 129902236 G A MKI67 Missense_Mutation p.T2623M 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-LN-A4A3-01 10 48413931 48413931 T A GDF2 Missense_Mutation p.T313S 0.26 tolerated(1) benign(0) TCGA-LN-A4A3-01 10 52834303 52834303 A T PRKG1 5'UTR 0.24 TCGA-LN-A4A3-01 10 64914115 64914115 C A NRBF2 3'UTR 0.13 TCGA-LN-A4A3-01 10 78644878 78644878 C T KCNMA1 3'Flank 0.19 TCGA-LN-A4A3-01 11 117973848 117973848 T A TMPRSS4 Missense_Mutation p.C64S 0.29 deleterious(0) possibly_damaging(0.847) TCGA-LN-A4A3-01 11 124950542 124950542 A C SLC37A2 Missense_Mutation p.H187P 0.10 deleterious(0) probably_damaging(0.993) TCGA-LN-A4A3-01 11 22297708 22297708 T C ANO5 Missense_Mutation p.V828A 0.12 deleterious(0) possibly_damaging(0.822) TCGA-LN-A4A3-01 11 46751011 46751011 G A F2 Silent p.G518G 0.43 TCGA-LN-A4A3-01 11 4904034 4904034 G A OR51T1 Missense_Mutation p.R329H 0.36 deleterious(0.04) benign(0.051) TCGA-LN-A4A3-01 11 5221161 5221161 A G OR51V1 Missense_Mutation p.V257A 0.09 deleterious(0) possibly_damaging(0.868) TCGA-LN-A4A3-01 12 120569744 120569744 T C GCN1L1 Missense_Mutation p.Q2467R 0.18 benign(0.003) TCGA-LN-A4A3-01 12 129153998 129153998 A G TMEM132C Missense_Mutation p.K448E 0.11 deleterious(0) benign(0.381) TCGA-LN-A4A3-01 12 129373274 129373274 T G GLT1D1 Missense_Mutation p.V103G 0.06 deleterious(0) possibly_damaging(0.504) TCGA-LN-A4A3-01 12 34179678 34179678 A G ALG10 Missense_Mutation p.Y417C 0.13 deleterious(0) probably_damaging(1) TCGA-LN-A4A3-01 12 53453482 53453482 C A TENC1 Missense_Mutation p.A696D 0.13 deleterious(0.01) possibly_damaging(0.628) TCGA-LN-A4A3-01 12 54339079 54339079 G A HOXC13 3'UTR 0.10 TCGA-LN-A4A3-01 12 62936944 62936944 T A MON2 Missense_Mutation p.I811N 0.08 deleterious(0) probably_damaging(0.947) TCGA-LN-A4A3-01 12 99126322 99126322 A G APAF1 Missense_Mutation p.Y1242C 0.14 deleterious(0) probably_damaging(0.958) TCGA-LN-A4A3-01 13 64415472 64415472 C A RP11-394A14.2 RNA 0.64 TCGA-LN-A4A3-01 15 30653699 30653699 G A CHRFAM7A 3'Flank 0.08 TCGA-LN-A4A3-01 15 65267023 65267023 G T SPG21 Missense_Mutation p.H123Q 0.22 tolerated(0.3) benign(0.229) TCGA-LN-A4A3-01 16 18858815 18858815 C T SMG1 Missense_Mutation p.D1986N 0.11 tolerated(0.16) probably_damaging(0.958) TCGA-LN-A4A3-01 16 28468188 28468188 C A NPIPB7 Nonsense_Mutation p.E268* 0.32 TCGA-LN-A4A3-01 16 30370527 30370527 C T TBC1D10B Silent p.S536S 0.07 TCGA-LN-A4A3-01 16 3433044 3433044 C T ZSCAN32 Silent p.K422K 0.06 TCGA-LN-A4A3-01 16 4921188 4921188 T G UBN1 Missense_Mutation p.L531R 0.37 deleterious(0) probably_damaging(0.993) TCGA-LN-A4A3-01 16 58590827 58590827 G A CNOT1 Silent p.N801N 0.11 TCGA-LN-A4A3-01 16 64984804 64984804 G A CDH11 Missense_Mutation p.T587I 0.10 deleterious(0.01) benign(0.356) TCGA-LN-A4A3-01 16 87868078 87868078 G C SLC7A5 Silent p.P470P 0.24 TCGA-LN-A4A3-01 16 88809254 88809254 C T PIEZO1 Intron 0.29 TCGA-LN-A4A3-01 17 12898129 12898129 C G ELAC2 Missense_Mutation p.V661L 0.31 tolerated(0.61) benign(0.014) TCGA-LN-A4A3-01 17 1378125 1378125 A G MYO1C Missense_Mutation p.L566P 0.47 deleterious(0) possibly_damaging(0.904) TCGA-LN-A4A3-01 17 27031779 27031779 A G PROCA1 Silent p.C58C 0.19 TCGA-LN-A4A3-01 17 33255125 33255125 G A CCT6B Missense_Mutation p.A512V 0.38 deleterious(0.04) benign(0.368) TCGA-LN-A4A3-01 17 34074204 34074204 G T GAS2L2 Missense_Mutation p.Q306K 0.18 deleterious(0) probably_damaging(0.996) TCGA-LN-A4A3-01 17 48829869 48829869 C G LUC7L3 3'UTR 0.12 TCGA-LN-A4A3-01 17 61613295 61613295 G A KCNH6 Missense_Mutation p.G456D 0.10 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A3-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.45 TCGA-LN-A4A3-01 18 43846721 43846721 A T C18orf25 3'UTR 0.16 TCGA-LN-A4A3-01 18 8825247 8825247 C T SOGA2 Missense_Mutation p.R1247W 0.27 deleterious(0) probably_damaging(0.975) TCGA-LN-A4A3-01 19 19010510 19010510 A G COPE Missense_Mutation p.L302P 0.09 tolerated(0.27) benign(0.432) TCGA-LN-A4A3-01 19 40030187 40030187 C T EID2 Missense_Mutation p.R178H 0.11 deleterious(0.01) possibly_damaging(0.715) TCGA-LN-A4A3-01 19 44223370 44223370 G A IRGC Silent p.P220P 0.21 TCGA-LN-A4A3-01 19 56895810 56895810 A C ZNF582 Missense_Mutation p.L326V 0.10 deleterious(0.01) probably_damaging(0.988) TCGA-LN-A4A3-01 19 6693004 6693004 C T C3 Silent p.L1107L 0.26 TCGA-LN-A4A3-01 1 149783891 149783891 A G HIST2H2BF 5'UTR 0.22 TCGA-LN-A4A3-01 1 149858000 149858000 T C HIST2H2BE Missense_Mutation p.N64S 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LN-A4A3-01 1 155891416 155891416 T C KIAA0907 Missense_Mutation p.Y339C 0.23 deleterious(0.03) possibly_damaging(0.8) TCGA-LN-A4A3-01 1 160186913 160186913 A G DCAF8 3'UTR 0.32 TCGA-LN-A4A3-01 1 161335367 161335368 - T C1orf192 Frame_Shift_Ins p.N99Kfs*3 0.09 TCGA-LN-A4A3-01 1 208200421 208200421 C T PLXNA2 3'UTR 0.07 TCGA-LN-A4A3-01 1 228467068 228467068 G A OBSCN Missense_Mutation p.R2869Q 0.07 probably_damaging(0.964) TCGA-LN-A4A3-01 1 43830658 43830658 T A ELOVL1 Missense_Mutation p.S87C 0.36 tolerated(0.14) possibly_damaging(0.726) TCGA-LN-A4A3-01 1 56197233 56197233 T C RP11-466L17.1 RNA 0.30 TCGA-LN-A4A3-01 20 32377396 32377396 T A ZNF341 Splice_Site p.X672_splice 0.44 TCGA-LN-A4A3-01 20 62045497 62045497 G A KCNQ2 Silent p.C525C 0.49 TCGA-LN-A4A3-01 21 43171399 43171399 C A RIPK4 Missense_Mutation p.D161Y 0.45 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A3-01 22 19048340 19048340 T A DGCR2 Intron 0.09 TCGA-LN-A4A3-01 22 22516622 22516622 C T IGLV4-60 Missense_Mutation p.P11S 0.39 tolerated(0.94) benign(0.001) TCGA-LN-A4A3-01 22 46793652 46793652 C T CELSR1 Missense_Mutation p.D1874N 0.19 tolerated(0.65) benign(0.008) TCGA-LN-A4A3-01 2 152471049 152471049 C T NEB Missense_Mutation p.R3781Q 0.13 benign(0.106) TCGA-LN-A4A3-01 2 188348894 188348894 A T TFPI Missense_Mutation p.N195K 0.13 deleterious(0.02) benign(0.011) TCGA-LN-A4A3-01 2 262569 262569 T A SH3YL1 Intron 0.23 TCGA-LN-A4A3-01 2 43452439 43452440 - CA ZFP36L2 Frame_Shift_Ins p.K169Afs*19 0.10 TCGA-LN-A4A3-01 3 109136698 109136698 C T RP11-702L6.4 RNA 0.08 TCGA-LN-A4A3-01 3 180633301 180633301 A G FXR1 Intron 0.08 TCGA-LN-A4A3-01 3 184106703 184106703 G A CHRD Missense_Mutation p.R911Q 0.41 deleterious(0.02) probably_damaging(0.996) TCGA-LN-A4A3-01 3 195505314 195505314 G A MUC4 Missense_Mutation p.P4268L 0.22 possibly_damaging(0.843) TCGA-LN-A4A3-01 3 69088134 69088134 C T TMF1 Silent p.E618E 0.16 TCGA-LN-A4A3-01 4 111397731 111397731 C T ENPEP Missense_Mutation p.A54V 0.23 tolerated(0.16) benign(0.003) TCGA-LN-A4A3-01 4 1208163 1208163 C T CTBP1 Silent p.A287A 0.07 TCGA-LN-A4A3-01 4 176555905 176555905 C T GPM6A 3'UTR 0.13 TCGA-LN-A4A3-01 4 184239608 184239608 C T CLDN22 3'UTR 0.06 TCGA-LN-A4A3-01 4 1945980 1945980 T C WHSC1 Intron 0.10 TCGA-LN-A4A3-01 4 66213881 66213881 A C EPHA5 Missense_Mutation p.I850R 0.17 deleterious(0) probably_damaging(0.995) TCGA-LN-A4A3-01 4 73169747 73169747 C G ADAMTS3 Missense_Mutation p.E771Q 0.10 tolerated(0.09) benign(0.232) TCGA-LN-A4A3-01 5 149827255 149827255 G T RPS14 Silent p.V14V 0.37 TCGA-LN-A4A3-01 5 45261328 45261328 G A HCN1 3'UTR 0.06 TCGA-LN-A4A3-01 5 72386096 72386096 T C FCHO2 3'UTR 0.07 TCGA-LN-A4A3-01 5 80382767 80382767 G A RASGRF2 Missense_Mutation p.R462H 0.11 deleterious(0) probably_damaging(0.945) TCGA-LN-A4A3-01 6 160471650 160471650 C T IGF2R Missense_Mutation p.T887M 0.26 deleterious(0) probably_damaging(0.989) TCGA-LN-A4A3-01 6 99990376 99990376 A G CCNC 3'UTR 0.29 TCGA-LN-A4A3-01 7 18674352 18674352 C T HDAC9 Missense_Mutation p.T300I 0.18 tolerated(0.25) benign(0.012) TCGA-LN-A4A3-01 7 26225269 26225269 G A NFE2L3 Missense_Mutation p.D651N 0.21 deleterious(0) probably_damaging(1) TCGA-LN-A4A3-01 7 42004063 42004063 G A GLI3 Silent p.S1536S 0.34 TCGA-LN-A4A3-01 8 131922004 131922004 C G ADCY8 Missense_Mutation p.W530C 0.17 deleterious(0) probably_damaging(1) TCGA-LN-A4A3-01 8 140743415 140743415 T A TRAPPC9 Silent p.G1210G 0.25 TCGA-LN-A4A3-01 8 143352650 143352650 C T TSNARE1 Intron 0.22 TCGA-LN-A4A3-01 8 61763057 61763057 G A CHD7 Missense_Mutation p.E1804K 0.10 probably_damaging(0.986) TCGA-LN-A4A3-01 8 67372632 67372632 G C ADHFE1 Missense_Mutation p.D418H 0.31 deleterious(0.04) possibly_damaging(0.537) TCGA-LN-A4A3-01 8 99441892 99441892 G A KCNS2 3'UTR 0.15 TCGA-LN-A4A3-01 9 84562614 84562614 G A RP11-383M4.6 Intron 0.10 TCGA-LN-A4A3-01 X 10417677 10417677 G A MID1 Missense_Mutation p.R579C 0.62 deleterious(0) probably_damaging(1) TCGA-LN-A4A3-01 X 106803587 106803587 C T FRMPD3 Missense_Mutation p.T321I 0.38 deleterious(0.01) possibly_damaging(0.905) TCGA-LN-A4A4-01 10 16859117 16859117 G A RSU1 5'UTR 0.29 TCGA-LN-A4A4-01 10 16949507 16949507 C T CUBN Missense_Mutation p.V2569M 0.25 deleterious(0.01) probably_damaging(0.954) TCGA-LN-A4A4-01 10 55892731 55892731 T C PCDH15 Silent p.P607P 0.38 TCGA-LN-A4A4-01 10 93789866 93789866 A G BTAF1 3'UTR 0.40 TCGA-LN-A4A4-01 11 117076011 117076011 G T PCSK7 3'UTR 0.58 TCGA-LN-A4A4-01 11 118620908 118620908 T C DDX6 3'UTR 0.15 TCGA-LN-A4A4-01 11 119077233 119077233 C T CBL Missense_Mutation p.H36Y 0.71 deleterious_low_confidence(0.04) benign(0.152) TCGA-LN-A4A4-01 11 123847675 123847675 T C OR10S1 Missense_Mutation p.I242V 0.50 deleterious(0) possibly_damaging(0.469) TCGA-LN-A4A4-01 11 123900746 123900746 G T OR10G8 Silent p.S139S 0.28 TCGA-LN-A4A4-01 11 124413294 124413294 G C OR8B12 Nonsense_Mutation p.S86* 0.58 TCGA-LN-A4A4-01 11 124489477 124489477 C A PANX3 Silent p.S275S 0.19 TCGA-LN-A4A4-01 11 43904237 43904237 G A ALKBH3 Missense_Mutation p.G12E 0.79 deleterious(0) probably_damaging(1) TCGA-LN-A4A4-01 11 59610015 59610015 C G GIF Missense_Mutation p.A138P 0.22 tolerated(0.23) probably_damaging(0.976) TCGA-LN-A4A4-01 11 62372637 62372638 CA - EML3 Frame_Shift_Del p.A644* 0.48 TCGA-LN-A4A4-01 12 108643047 108643047 G T WSCD2 3'UTR 0.34 TCGA-LN-A4A4-01 12 111889331 111889331 T G SH2B3 3'UTR 0.13 TCGA-LN-A4A4-01 12 121868348 121868348 C T KDM2B Intron 0.29 TCGA-LN-A4A4-01 12 12312804 12312804 G A LRP6 Missense_Mutation p.R792W 0.13 deleterious(0) probably_damaging(1) TCGA-LN-A4A4-01 12 127229404 127229404 T C LINC00943 RNA 0.21 TCGA-LN-A4A4-01 12 22005402 22005402 T C ABCC9 Missense_Mutation p.D848G 0.17 tolerated(0.11) benign(0.144) TCGA-LN-A4A4-01 12 69127301 69127301 A G NUP107 Missense_Mutation p.Y724C 0.23 tolerated(0.06) benign(0.128) TCGA-LN-A4A4-01 12 71526592 71526592 C T TSPAN8 Missense_Mutation p.G153S 0.14 deleterious(0) probably_damaging(1) TCGA-LN-A4A4-01 13 103330881 103330881 C T TPP2 3'Flank 0.36 TCGA-LN-A4A4-01 13 43986993 43986993 T A ENOX1 Missense_Mutation p.M20L 0.36 tolerated_low_confidence(0.98) benign(0) TCGA-LN-A4A4-01 13 43986994 43986994 C A ENOX1 Missense_Mutation p.Q19H 0.37 deleterious_low_confidence(0.03) benign(0.216) TCGA-LN-A4A4-01 13 72063217 72063217 T C DACH1 Missense_Mutation p.H547R 0.08 possibly_damaging(0.61) TCGA-LN-A4A4-01 14 101489664 101489664 G T MIR411 RNA 0.35 TCGA-LN-A4A4-01 14 20404271 20404271 G A OR4K1 Nonsense_Mutation p.W149* 0.08 TCGA-LN-A4A4-01 14 23999349 23999349 T C ZFHX2 Missense_Mutation p.Q952R 0.09 benign(0.434) TCGA-LN-A4A4-01 14 24641695 24641695 C G REC8 5'UTR 0.10 TCGA-LN-A4A4-01 14 35515698 35515698 T C FAM177A1 Missense_Mutation p.L10P 0.16 deleterious_low_confidence(0) benign(0.207) TCGA-LN-A4A4-01 14 56142634 56142634 A G KTN1 Missense_Mutation p.K1285E 0.30 deleterious(0.03) benign(0.399) TCGA-LN-A4A4-01 14 57075997 57075997 C T TMEM260 Silent p.F270F 0.21 TCGA-LN-A4A4-01 14 58604975 58604975 C A C14orf37 Missense_Mutation p.G368W 0.44 deleterious(0) benign(0.15) TCGA-LN-A4A4-01 15 42837391 42837391 G C LRRC57 Missense_Mutation p.L188V 0.30 deleterious(0.03) probably_damaging(0.997) TCGA-LN-A4A4-01 15 48500102 48500102 T G SLC12A1 Missense_Mutation p.F62L 0.68 tolerated(0.18) benign(0.103) TCGA-LN-A4A4-01 16 20702457 20702457 G A ACSM1 Silent p.H18H 0.36 TCGA-LN-A4A4-01 16 3781439 3781439 G A CREBBP Silent p.V1642V 0.28 TCGA-LN-A4A4-01 16 48209220 48209220 G T ABCC11 Missense_Mutation p.S1216Y 0.52 deleterious(0) probably_damaging(0.987) TCGA-LN-A4A4-01 16 57104507 57104507 G C NLRC5 Silent p.G1548G 0.22 TCGA-LN-A4A4-01 16 85712254 85712254 C T GINS2 Silent p.P108P 0.30 TCGA-LN-A4A4-01 17 12649386 12649386 G C MYOCD Silent p.L374L 0.10 TCGA-LN-A4A4-01 17 19611088 19611088 A T SLC47A2 Missense_Mutation p.L269Q 0.52 tolerated(0.14) benign(0.059) TCGA-LN-A4A4-01 17 64876781 64876781 G C CACNG5 Missense_Mutation p.A131P 0.24 tolerated(0.13) probably_damaging(0.976) TCGA-LN-A4A4-01 17 7193602 7193602 G A YBX2 Missense_Mutation p.P238S 0.25 tolerated(0.1) possibly_damaging(0.641) TCGA-LN-A4A4-01 17 72480172 72480172 G A CD300A Silent p.S269S 0.74 TCGA-LN-A4A4-01 17 7577498 7577498 C T TP53 Splice_Site p.X261_splice 0.73 TCGA-LN-A4A4-01 17 79094681 79094681 G A AATK Nonsense_Mutation p.R1019* 0.59 TCGA-LN-A4A4-01 18 14778005 14778005 C G ANKRD30B Missense_Mutation p.Q451E 0.53 tolerated(0.2) possibly_damaging(0.542) TCGA-LN-A4A4-01 18 47431143 47431143 G A MYO5B Missense_Mutation p.R824C 0.28 deleterious(0) probably_damaging(0.982) TCGA-LN-A4A4-01 18 6311610 6311610 G A L3MBTL4 Silent p.N5N 0.29 TCGA-LN-A4A4-01 18 72914034 72914034 G A ZADH2 Silent p.G157G 0.29 TCGA-LN-A4A4-01 18 72914035 72914035 C A ZADH2 Missense_Mutation p.G157V 0.28 deleterious(0) probably_damaging(0.98) TCGA-LN-A4A4-01 19 1036240 1036408 19:1036240-1036408 - CNN2 large deletion p.X170_splice 0.10 TCGA-LN-A4A4-01 19 1120003 1120003 T G SBNO2 Missense_Mutation p.H390P 0.30 deleterious(0.01) benign(0.25) TCGA-LN-A4A4-01 19 12090268 12090268 A C ZNF763 3'UTR 0.09 TCGA-LN-A4A4-01 19 19460171 19460171 G A MAU2 Missense_Mutation p.E492K 0.32 deleterious(0.01) probably_damaging(1) TCGA-LN-A4A4-01 19 31039123 31039123 C G ZNF536 Missense_Mutation p.S866C 0.23 deleterious(0.01) possibly_damaging(0.56) TCGA-LN-A4A4-01 19 38102492 38102492 T C ZNF540 Missense_Mutation p.I104T 0.21 tolerated(0.18) benign(0.002) TCGA-LN-A4A4-01 19 3982327 3982327 G A EEF2 Silent p.F236F 0.12 TCGA-LN-A4A4-01 19 46094736 46094736 C T GPR4 Missense_Mutation p.R130H 0.27 deleterious(0.01) possibly_damaging(0.781) TCGA-LN-A4A4-01 19 55494687 55494687 G A NLRP2 Missense_Mutation p.G541R 0.18 tolerated(0.42) benign(0.002) TCGA-LN-A4A4-01 19 5867206 5867206 G A FUT5 Silent p.D177D 0.19 TCGA-LN-A4A4-01 1 152082500 152082500 C T TCHH Missense_Mutation p.G1065R 0.33 unknown(0) TCGA-LN-A4A4-01 1 161274579 161274579 G A MPZ 3'UTR 0.27 TCGA-LN-A4A4-01 1 161519619 161519619 C T FCGR3A Missense_Mutation p.G6R 0.19 deleterious_low_confidence(0) benign(0.145) TCGA-LN-A4A4-01 1 16460076 16460076 G A EPHA2 Silent p.Y588Y 0.48 TCGA-LN-A4A4-01 1 166822883 166822883 G C POGK 3'UTR 0.26 TCGA-LN-A4A4-01 1 180064685 180064685 C T CEP350 Nonsense_Mutation p.Q2847* 0.36 TCGA-LN-A4A4-01 1 185069487 185069487 A G RNF2 3'UTR 0.40 TCGA-LN-A4A4-01 1 203452624 203452624 C T PRELP Silent p.I104I 0.34 TCGA-LN-A4A4-01 1 217947781 217947781 A G SPATA17 Missense_Mutation p.K209E 0.33 tolerated(0.84) benign(0.001) TCGA-LN-A4A4-01 1 236704981 236704981 C T LGALS8 Silent p.L165L 0.39 TCGA-LN-A4A4-01 1 27705891 27705891 A T CD164L2 3'UTR 0.46 TCGA-LN-A4A4-01 1 27875978 27875978 C T AHDC1 Silent p.R883R 0.51 TCGA-LN-A4A4-01 1 29606613 29606613 G A PTPRU Missense_Mutation p.V610M 0.32 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A4-01 1 3677911 3677911 G T CCDC27 Nonsense_Mutation p.E260* 0.45 TCGA-LN-A4A4-01 1 41220064 41220064 G T NFYC Intron 0.50 TCGA-LN-A4A4-01 1 54497595 54497595 T A TMEM59 3'UTR 0.26 TCGA-LN-A4A4-01 1 79107493 79107493 G T IFI44L Nonstop_Mutation p.*453Lext*5 0.34 TCGA-LN-A4A4-01 20 23345474 23345474 A T GZF1 Missense_Mutation p.S152C 0.39 deleterious(0.01) possibly_damaging(0.599) TCGA-LN-A4A4-01 20 25199221 25199221 C T ENTPD6 Missense_Mutation p.A305V 0.34 deleterious(0.01) probably_damaging(0.945) TCGA-LN-A4A4-01 20 41419951 41419951 C T PTPRT Missense_Mutation p.V124M 0.74 deleterious(0) possibly_damaging(0.844) TCGA-LN-A4A4-01 20 4848460 4848460 A G SLC23A2 Missense_Mutation p.S438P 0.11 deleterious(0) probably_damaging(0.996) TCGA-LN-A4A4-01 21 34926316 34926316 A G SON Silent p.L1593L 0.41 TCGA-LN-A4A4-01 22 22043027 22043027 A T PPIL2 Missense_Mutation p.E343V 0.17 deleterious(0.01) benign(0.102) TCGA-LN-A4A4-01 22 22316801 22316801 C T TOP3B Missense_Mutation p.G509S 0.10 deleterious(0) probably_damaging(1) TCGA-LN-A4A4-01 2 179640736 179640736 T C TTN Missense_Mutation p.H1952R 0.28 TCGA-LN-A4A4-01 2 185804148 185804148 C G ZNF804A 3'UTR 0.31 TCGA-LN-A4A4-01 2 202151220 202151220 A G CASP8 Missense_Mutation p.Y507C 0.65 tolerated(0.15) possibly_damaging(0.841) TCGA-LN-A4A4-01 2 203991643 203991643 A G NBEAL1 Missense_Mutation p.Y1052C 0.26 deleterious(0.01) benign(0.031) TCGA-LN-A4A4-01 2 220073594 220073594 A T ZFAND2B Intron 0.34 TCGA-LN-A4A4-01 2 225630329 225630329 T G DOCK10 3'UTR 0.57 TCGA-LN-A4A4-01 2 73827964 73827964 C T ALMS1 Missense_Mutation p.P3942L 0.24 benign(0.003) TCGA-LN-A4A4-01 2 85808700 85808700 C T VAMP8 Missense_Mutation p.S55F 0.29 deleterious(0) benign(0.414) TCGA-LN-A4A4-01 2 97368755 97368755 C T LMAN2L 3'Flank 0.09 TCGA-LN-A4A4-01 2 99901179 99901179 T G LYG1 Silent p.P146P 0.35 TCGA-LN-A4A4-01 3 130716559 130716559 A G ATP2C1 Missense_Mutation p.I819V 0.48 tolerated(0.37) benign(0.051) TCGA-LN-A4A4-01 3 164727159 164727159 G T SI Missense_Mutation p.P1363T 0.20 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A4-01 3 169496707 169496707 C T MYNN Nonsense_Mutation p.Q140* 0.09 TCGA-LN-A4A4-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.22 tolerated(0.11) possibly_damaging(0.529) TCGA-LN-A4A4-01 3 195027311 195027311 G A ACAP2 Missense_Mutation p.R349C 0.18 deleterious(0.04) benign(0.302) TCGA-LN-A4A4-01 3 44882647 44882647 G C KIF15 Missense_Mutation p.A1168P 0.58 deleterious(0.01) possibly_damaging(0.888) TCGA-LN-A4A4-01 3 4888305 4888305 C - ITPR1 3'UTR 0.45 TCGA-LN-A4A4-01 3 49739576 49739576 G C RNF123 Missense_Mutation p.G519A 0.60 tolerated(0.46) possibly_damaging(0.632) TCGA-LN-A4A4-01 3 62278318 62278318 T A PTPRG Intron 0.56 TCGA-LN-A4A4-01 3 93593135 93593135 C G PROS1 Missense_Mutation p.R662T 0.34 tolerated(0.61) possibly_damaging(0.846) TCGA-LN-A4A4-01 4 103806549 103806549 A T CISD2 Missense_Mutation p.T94S 0.32 tolerated(0.15) benign(0.055) TCGA-LN-A4A4-01 4 104116291 104116291 T C CENPE Missense_Mutation p.I153V 0.67 benign(0.006) TCGA-LN-A4A4-01 4 107845807 107845807 G C DKK2 Missense_Mutation p.L142V 0.41 tolerated(0.91) benign(0.333) TCGA-LN-A4A4-01 4 146682287 146682287 C T ZNF827 3'UTR 0.35 TCGA-LN-A4A4-01 4 167023131 167023131 C A TLL1 3'UTR 0.25 TCGA-LN-A4A4-01 4 167023132 167023132 C A TLL1 3'UTR 0.25 TCGA-LN-A4A4-01 4 177650746 177650746 G C VEGFC Nonsense_Mutation p.S101* 0.41 TCGA-LN-A4A4-01 4 40103753 40103755 ATC - N4BP2 In_Frame_Del p.S99del 0.70 TCGA-LN-A4A4-01 4 90168959 90168959 C T GPRIN3 Missense_Mutation p.R768H 0.68 tolerated(0.11) probably_damaging(0.98) TCGA-LN-A4A4-01 5 120021833 120021833 C T PRR16 Missense_Mutation p.T92M 0.44 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-LN-A4A4-01 5 140615791 140615791 C T PCDHB18 RNA 0.31 TCGA-LN-A4A4-01 5 140754632 140754632 C T PCDHGA6 Nonsense_Mutation p.R328* 0.48 TCGA-LN-A4A4-01 5 142658828 142658828 C T NR3C1 3'Flank 0.24 TCGA-LN-A4A4-01 5 150704916 150704916 G A SLC36A2 Missense_Mutation p.A314V 0.38 deleterious(0) benign(0.151) TCGA-LN-A4A4-01 5 23522919 23522919 G T PRDM9 Silent p.L269L 0.31 TCGA-LN-A4A4-01 5 43039891 43039891 C T ANXA2R Silent p.A86A 0.35 TCGA-LN-A4A4-01 5 56174810 56174810 A G MAP3K1 Missense_Mutation p.T657A 0.21 tolerated(0.16) benign(0.316) TCGA-LN-A4A4-01 6 31795842 31795842 C T HSPA1B Missense_Mutation p.P39S 0.59 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-LN-A4A4-01 6 4099372 4099372 A G C6orf201 Missense_Mutation p.K75R 0.73 tolerated(0.24) possibly_damaging(0.765) TCGA-LN-A4A4-01 6 80383498 80383498 T C SH3BGRL2 Silent p.N71N 0.78 TCGA-LN-A4A4-01 7 11675933 11675933 T G THSD7A Missense_Mutation p.E282D 0.34 tolerated(0.52) benign(0.003) TCGA-LN-A4A4-01 7 120389403 120389403 C T KCND2 3'UTR 0.22 TCGA-LN-A4A4-01 7 141443477 141443477 G A SSBP1 Missense_Mutation p.G68R 0.10 tolerated_low_confidence(0.4) benign(0.247) TCGA-LN-A4A4-01 7 21730409 21730409 C T DNAH11 Missense_Mutation p.T1991I 0.09 benign(0.007) TCGA-LN-A4A4-01 7 21750323 21750323 T C DNAH11 Splice_Site p.X2285_splice 0.17 TCGA-LN-A4A4-01 7 2963891 2963891 A T CARD11 Missense_Mutation p.M639K 0.12 tolerated(0.2) benign(0.129) TCGA-LN-A4A4-01 7 42961412 42961412 T C PSMA2 Intron 0.22 TCGA-LN-A4A4-01 7 44080441 44080441 C G DBNL 5'Flank 0.55 TCGA-LN-A4A4-01 7 44920662 44920662 C T PURB 3'UTR 0.13 TCGA-LN-A4A4-01 7 7634722 7634722 C T MIOS Missense_Mutation p.H719Y 0.14 tolerated(1) benign(0.036) TCGA-LN-A4A4-01 8 11219212 11219212 G A TDH RNA 0.63 TCGA-LN-A4A4-01 8 121473471 121473471 A G MTBP Missense_Mutation p.Y318C 0.22 deleterious(0) probably_damaging(0.979) TCGA-LN-A4A4-01 8 132052018 132052018 G T ADCY8 Missense_Mutation p.L188M 0.32 deleterious(0.01) possibly_damaging(0.878) TCGA-LN-A4A4-01 8 25190123 25190123 T C DOCK5 Missense_Mutation p.L669S 0.33 deleterious(0) probably_damaging(0.989) TCGA-LN-A4A4-01 8 54960378 54960378 G C LYPLA1 3'UTR 0.28 TCGA-LN-A4A4-01 8 87641177 87641177 C T CNGB3 Missense_Mutation p.E484K 0.16 deleterious(0.05) benign(0.013) TCGA-LN-A4A4-01 9 124535315 124535315 G A DAB2IP Silent p.A808A 0.33 TCGA-LN-A4A4-01 9 129646660 129646660 A G ZBTB34 3'UTR 0.55 TCGA-LN-A4A4-01 9 139877754 139877754 C A LCNL1 5'UTR 0.52 TCGA-LN-A4A4-01 9 15744551 15744551 C G CCDC171 Nonsense_Mutation p.S777* 0.32 TCGA-LN-A4A4-01 X 107431880 107431880 C T COL4A6 Missense_Mutation p.G486D 0.53 probably_damaging(0.959) TCGA-LN-A4A4-01 X 135594149 135594157 GATGATGAT - HTATSF1 In_Frame_Del p.D751_D753del 0.30 TCGA-LN-A4A4-01 X 56593245 56593245 C T UBQLN2 3'UTR 0.60 TCGA-LN-A4A4-01 Y 24443783 24443783 G C TTTY5 RNA 0.42 TCGA-LN-A4A5-01 10 18088835 18088836 - T TMEM236 3'UTR 0.17 TCGA-LN-A4A5-01 10 90045196 90045196 C A RNLS Missense_Mutation p.G315V 0.06 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A5-01 11 116706854 116706854 C T APOA1 Silent p.L158L 0.09 TCGA-LN-A4A5-01 11 20623021 20623021 C T SLC6A5 Missense_Mutation p.A117V 0.15 tolerated_low_confidence(0.71) benign(0.051) TCGA-LN-A4A5-01 11 32112966 32112966 T A RCN1 Missense_Mutation p.L75H 0.03 deleterious(0) probably_damaging(0.997) TCGA-LN-A4A5-01 11 66458874 66458874 G A SPTBN2 Missense_Mutation p.R1816W 0.20 tolerated(0.07) benign(0.426) TCGA-LN-A4A5-01 11 94126685 94126686 - A GPR83 Frame_Shift_Ins p.A205Cfs*13 0.19 TCGA-LN-A4A5-01 12 48391685 48391685 G A COL2A1 Missense_Mutation p.P133L 0.25 unknown(0) TCGA-LN-A4A5-01 12 50531578 50531578 T C CERS5 Missense_Mutation p.Y190C 0.22 deleterious(0) probably_damaging(0.995) TCGA-LN-A4A5-01 12 53873333 53873333 A C PCBP2 3'UTR 0.29 TCGA-LN-A4A5-01 12 56092633 56092633 G T ITGA7 Missense_Mutation p.R291S 0.19 deleterious(0) probably_damaging(0.951) TCGA-LN-A4A5-01 12 64609541 64609541 C A C12orf66 Missense_Mutation p.M146I 0.16 deleterious(0.05) benign(0.006) TCGA-LN-A4A5-01 12 65564146 65564146 A T LEMD3 Missense_Mutation p.N257I 0.18 deleterious_low_confidence(0.01) benign(0.176) TCGA-LN-A4A5-01 14 23898239 23898239 A G MYH7 Silent p.N444N 0.20 TCGA-LN-A4A5-01 14 23898270 23898270 C T MYH7 Missense_Mutation p.R434K 0.19 tolerated(1) benign(0.006) TCGA-LN-A4A5-01 14 64746800 64746800 T C ESR2 Missense_Mutation p.D145G 0.14 deleterious(0.01) benign(0.027) TCGA-LN-A4A5-01 14 69259723 69259725 GCA - ZFP36L1 5'UTR 0.21 TCGA-LN-A4A5-01 14 80328631 80328631 C A NRXN3 3'UTR 0.19 TCGA-LN-A4A5-01 15 28929558 28929558 A G RP11-578F21.2 5'Flank 0.20 TCGA-LN-A4A5-01 15 59970196 59970196 C T BNIP2 Missense_Mutation p.R250H 0.16 tolerated(0.15) benign(0.148) TCGA-LN-A4A5-01 15 63042648 63042648 C G TLN2 Silent p.L1389L 0.15 TCGA-LN-A4A5-01 17 38122104 38122104 G T GSDMA Missense_Mutation p.R55L 0.18 tolerated(0.13) benign(0.373) TCGA-LN-A4A5-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.54 deleterious(0) probably_damaging(1) TCGA-LN-A4A5-01 17 76227704 76227704 C A TMEM235 5'Flank 0.09 TCGA-LN-A4A5-01 18 10681730 10681730 G A PIEZO2 Silent p.A2456A 0.14 TCGA-LN-A4A5-01 18 31323088 31323088 G A ASXL3 Silent p.E1092E 0.17 TCGA-LN-A4A5-01 18 74696752 74696752 C T RP11-862L9.3 3'Flank 0.13 TCGA-LN-A4A5-01 19 10812295 10812295 C T QTRT1 Silent p.T53T 0.20 TCGA-LN-A4A5-01 19 14208265 14208265 G T PRKACA Missense_Mutation p.L225M 0.22 deleterious(0.02) possibly_damaging(0.851) TCGA-LN-A4A5-01 19 19758016 19758016 T A ATP13A1 Silent p.G1009G 0.17 TCGA-LN-A4A5-01 19 3644144 3644144 C T PIP5K1C Missense_Mutation p.R484Q 0.20 tolerated(0.11) benign(0.033) TCGA-LN-A4A5-01 19 5867038 5867038 G A FUT5 Silent p.D233D 0.18 TCGA-LN-A4A5-01 19 747876 747876 G A PALM 3'UTR 0.22 TCGA-LN-A4A5-01 1 11292543 11292543 T C MTOR Missense_Mutation p.I822V 0.24 deleterious(0.01) benign(0.008) TCGA-LN-A4A5-01 1 1458215 1458215 A T ATAD3A Missense_Mutation p.K329M 0.17 deleterious(0) probably_damaging(0.982) TCGA-LN-A4A5-01 1 154960867 154960867 T G FLAD1 Missense_Mutation p.L220R 0.15 deleterious(0) probably_damaging(0.965) TCGA-LN-A4A5-01 1 156779493 156779493 G A SH2D2A Missense_Mutation p.A235V 0.16 tolerated(0.22) benign(0.02) TCGA-LN-A4A5-01 1 156779494 156779494 C A SH2D2A Missense_Mutation p.A235S 0.16 tolerated(0.46) benign(0.02) TCGA-LN-A4A5-01 1 162367093 162367093 C A SH2D1B Missense_Mutation p.D126Y 0.19 deleterious(0) probably_damaging(0.977) TCGA-LN-A4A5-01 1 177250911 177250911 C A BRINP2 3'UTR 0.16 TCGA-LN-A4A5-01 1 197070956 197070956 C A ASPM Missense_Mutation p.K2475N 0.14 deleterious(0.02) probably_damaging(0.967) TCGA-LN-A4A5-01 1 228210523 228210523 A T WNT3A Missense_Mutation p.E76V 0.14 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A5-01 1 29647330 29647330 C A PTPRU Missense_Mutation p.S1284Y 0.14 tolerated(0.62) probably_damaging(0.926) TCGA-LN-A4A5-01 1 29647331 29647331 C A PTPRU Silent p.S1284S 0.15 TCGA-LN-A4A5-01 1 36290920 36290920 A G AGO4 Missense_Mutation p.M105V 0.17 tolerated(0.32) benign(0) TCGA-LN-A4A5-01 1 44019257 44019257 G A PTPRF Silent p.P62P 0.17 TCGA-LN-A4A5-01 1 89448692 89448692 G A RBMXL1 Missense_Mutation p.S273L 0.18 tolerated(0.22) benign(0.022) TCGA-LN-A4A5-01 20 1629949 1629949 G C SIRPG Missense_Mutation p.P60R 0.10 deleterious(0) possibly_damaging(0.898) TCGA-LN-A4A5-01 20 3640428 3640428 G A GFRA4 3'Flank 0.22 TCGA-LN-A4A5-01 20 36640246 36640246 T A TTI1 Missense_Mutation p.E658V 0.19 deleterious(0) probably_damaging(0.991) TCGA-LN-A4A5-01 20 44856175 44856175 C A CDH22 Missense_Mutation p.E214D 0.22 deleterious(0) possibly_damaging(0.682) TCGA-LN-A4A5-01 22 21348236 21348236 C T LZTR1 Silent p.H459H 0.18 TCGA-LN-A4A5-01 2 114195430 114195430 C T CBWD2 5'UTR 0.12 TCGA-LN-A4A5-01 2 175213649 175213649 T C CIR1 Missense_Mutation p.K310R 0.12 tolerated_low_confidence(0.21) benign(0.097) TCGA-LN-A4A5-01 2 179455006 179455006 A G TTN Silent p.C20482C 0.21 TCGA-LN-A4A5-01 2 2328454 2328454 C A MYT1L Intron 0.14 TCGA-LN-A4A5-01 2 27599187 27599187 G T SNX17 Missense_Mutation p.R397L 0.13 tolerated(0.16) benign(0.312) TCGA-LN-A4A5-01 2 36777211 36777211 C T CRIM1 3'UTR 0.21 TCGA-LN-A4A5-01 2 44187730 44187730 C A LRPPRC Missense_Mutation p.G511V 0.18 tolerated(0.07) benign(0) TCGA-LN-A4A5-01 2 47387412 47387412 G A CALM2 3'UTR 0.16 TCGA-LN-A4A5-01 2 80085292 80085292 C T CTNNA2 Missense_Mutation p.S151F 0.16 deleterious(0.03) benign(0.056) TCGA-LN-A4A5-01 2 96789707 96789707 G A ASTL Missense_Mutation p.T393I 0.16 deleterious_low_confidence(0.02) benign(0.07) TCGA-LN-A4A5-01 3 108127166 108127166 T A MYH15 Missense_Mutation p.E1547D 0.07 tolerated(0.43) benign(0.012) TCGA-LN-A4A5-01 3 135871405 135871405 T C MSL2 Silent p.L106L 0.20 TCGA-LN-A4A5-01 3 182941140 182941140 C G MCF2L2 Silent p.L765L 0.27 TCGA-LN-A4A5-01 3 197894637 197894637 C G FAM157A RNA 0.04 TCGA-LN-A4A5-01 3 62355953 62355953 G C FEZF2 Missense_Mutation p.N395K 0.16 deleterious(0.03) benign(0.115) TCGA-LN-A4A5-01 3 72426977 72426977 T C RYBP 3'UTR 0.37 TCGA-LN-A4A5-01 3 99514062 99514062 G T COL8A1 Missense_Mutation p.K439N 0.16 deleterious(0.04) unknown(0) TCGA-LN-A4A5-01 4 113506828 113506828 A G C4orf21 Missense_Mutation p.S1324P 0.15 deleterious(0.01) probably_damaging(0.977) TCGA-LN-A4A5-01 4 151504688 151504688 A T MAB21L2 Missense_Mutation p.Q169H 0.11 deleterious(0.01) benign(0.314) TCGA-LN-A4A5-01 4 154471245 154471245 G C KIAA0922 Missense_Mutation p.S87T 0.28 tolerated(0.38) benign(0.009) TCGA-LN-A4A5-01 4 186605996 186605996 G A SORBS2 Silent p.S5S 0.23 TCGA-LN-A4A5-01 4 248026 248026 A G ZNF876P RNA 0.15 TCGA-LN-A4A5-01 5 112389443 112389444 - A MCC Frame_Shift_Ins p.M809Ifs*47 0.24 TCGA-LN-A4A5-01 5 138729546 138729546 A T PROB1 Missense_Mutation p.C409S 0.22 tolerated_low_confidence(0.06) benign(0.08) TCGA-LN-A4A5-01 5 146770589 146770589 T - DPYSL3 3'UTR 0.08 TCGA-LN-A4A5-01 5 21765084 21765084 T C CDH12 Intron 0.38 TCGA-LN-A4A5-01 5 37725063 37725063 C T WDR70 Missense_Mutation p.P542L 0.12 tolerated(0.2) benign(0.065) TCGA-LN-A4A5-01 6 109687925 109687925 C T CD164 3'UTR 0.20 TCGA-LN-A4A5-01 6 139501876 139501876 T C HECA 3'UTR 0.23 TCGA-LN-A4A5-01 6 151247388 151247388 A G MTHFD1L Missense_Mutation p.R405G 0.18 deleterious(0) probably_damaging(0.982) TCGA-LN-A4A5-01 6 27115407 27115407 G A HIST1H2AH 3'Flank 0.13 TCGA-LN-A4A5-01 6 27805782 27805783 - A HIST1H2AK Frame_Shift_Ins p.Q113Pfs*7 0.12 TCGA-LN-A4A5-01 6 31371370 31371370 C A MICA 5'UTR 0.09 TCGA-LN-A4A5-01 6 33284415 33284415 G A ZBTB22 Silent p.S93S 0.19 TCGA-LN-A4A5-01 7 15651647 15651647 C A MEOX2 3'UTR 0.10 TCGA-LN-A4A5-01 7 44048550 44048550 T C SPDYE1 3'UTR 0.09 TCGA-LN-A4A5-01 7 82580258 82580258 A C PCLO Missense_Mutation p.L3216V 0.18 unknown(0) TCGA-LN-A4A5-01 8 101300299 101300299 T C RNF19A Missense_Mutation p.H35R 0.19 deleterious_low_confidence(0.01) benign(0.138) TCGA-LN-A4A5-01 9 101811974 101811974 C T COL15A1 Silent p.G932G 0.37 TCGA-LN-A4A5-01 9 101915707 101915707 A C TGFBR1 3'UTR 0.31 TCGA-LN-A4A5-01 9 116186500 116186500 G T C9orf43 Missense_Mutation p.L237F 0.14 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A5-01 9 140007735 140007735 A T DPP7 Missense_Mutation p.F209Y 0.12 tolerated(0.1) possibly_damaging(0.682) TCGA-LN-A4A5-01 9 140482271 140482271 C T ZMYND19 Missense_Mutation p.R39Q 0.17 tolerated(0.06) benign(0.375) TCGA-LN-A4A5-01 X 110495711 110495711 C A CAPN6 Nonsense_Mutation p.E175* 0.21 TCGA-LN-A4A5-01 X 113873947 113873947 C A HTR2C Intron 0.30 TCGA-LN-A4A5-01 X 21861336 21861336 G A MBTPS2 Missense_Mutation p.G42R 0.17 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A5-01 X 53573489 53573489 A C HUWE1 Missense_Mutation p.L3608R 0.28 unknown(0) TCGA-LN-A4A5-01 X 70783039 70783039 G C OGT Silent p.L736L 0.14 TCGA-LN-A4A6-01 10 11502820 11502820 G C USP6NL 3'UTR 0.42 TCGA-LN-A4A6-01 10 119027194 119027195 - A SLC18A2 Frame_Shift_Ins p.N380Kfs*81 0.27 TCGA-LN-A4A6-01 10 131635360 131635360 A T EBF3 3'UTR 0.33 TCGA-LN-A4A6-01 10 13629084 13629084 G A PRPF18 5'UTR 0.17 TCGA-LN-A4A6-01 10 91478561 91478561 A G KIF20B Missense_Mutation p.I456V 0.55 tolerated(0.1) probably_damaging(0.949) TCGA-LN-A4A6-01 11 100170076 100170076 T G CNTN5 Missense_Mutation p.N856K 0.24 deleterious(0.02) probably_damaging(1) TCGA-LN-A4A6-01 11 104879584 104879584 G T CASP5 Missense_Mutation p.S57Y 0.18 tolerated_low_confidence(0.12) benign(0.307) TCGA-LN-A4A6-01 11 14526711 14526711 T C PSMA1 3'UTR 0.56 TCGA-LN-A4A6-01 11 2150629 2150629 G T IGF2 3'Flank 0.40 TCGA-LN-A4A6-01 11 26569083 26569083 T A ANO3 Missense_Mutation p.N425K 0.41 deleterious(0.04) benign(0.309) TCGA-LN-A4A6-01 11 30352585 30352585 T A ARL14EP Silent p.T30T 0.27 TCGA-LN-A4A6-01 11 46810291 46810291 T C CKAP5 Silent p.P636P 0.39 TCGA-LN-A4A6-01 11 56058416 56058416 G T OR8H1 Silent p.G41G 0.19 TCGA-LN-A4A6-01 11 62297376 62297376 C T AHNAK Missense_Mutation p.D1505N 0.23 probably_damaging(0.998) TCGA-LN-A4A6-01 11 64609344 64609344 G A CDC42BPG Missense_Mutation p.R65C 0.22 deleterious(0.04) benign(0.244) TCGA-LN-A4A6-01 11 68773599 68773599 A T MRGPRF Missense_Mutation p.V60E 0.06 deleterious(0.01) possibly_damaging(0.478) TCGA-LN-A4A6-01 11 71249670 71249670 C T KRTAP5-8 3'UTR 0.09 TCGA-LN-A4A6-01 11 71850422 71850422 T G FOLR3 Missense_Mutation p.L172R 0.16 deleterious(0.02) possibly_damaging(0.665) TCGA-LN-A4A6-01 12 120960101 120960101 T C COQ5 Missense_Mutation p.I90V 0.36 tolerated(0.16) benign(0.047) TCGA-LN-A4A6-01 12 128899509 128899509 G A TMEM132C Silent p.K106K 0.26 TCGA-LN-A4A6-01 12 133277913 133277913 G T PXMP2 Missense_Mutation p.W159C 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A4A6-01 12 20858911 20858911 C A SLCO1C1 Missense_Mutation p.S100R 0.26 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A6-01 12 83289683 83289683 A G TMTC2 Silent p.G247G 0.33 TCGA-LN-A4A6-01 13 20660806 20660806 C G ZMYM2 3'UTR 0.30 TCGA-LN-A4A6-01 14 36211602 36211603 - A RALGAPA1 Frame_Shift_Ins p.S474Ffs*18 0.21 TCGA-LN-A4A6-01 14 50930823 50930823 T C MAP4K5 Missense_Mutation p.I256V 0.31 tolerated(1) benign(0.001) TCGA-LN-A4A6-01 14 74371780 74371780 C T ZNF410 Missense_Mutation p.H320Y 0.17 deleterious(0) probably_damaging(1) TCGA-LN-A4A6-01 15 50867083 50867083 T C TRPM7 Missense_Mutation p.Y1662C 0.47 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A6-01 15 51504529 51504529 A G CYP19A1 Silent p.N417N 0.55 TCGA-LN-A4A6-01 15 57730212 57730212 C T CGNL1 Silent p.F5F 0.16 TCGA-LN-A4A6-01 15 57921909 57921909 G C GCOM1 Missense_Mutation p.V179L 0.07 tolerated(0.79) benign(0.183) TCGA-LN-A4A6-01 15 66782848 66782848 T - MAP2K1 Frame_Shift_Del p.F360Lfs*74 0.41 TCGA-LN-A4A6-01 16 1993105 1993105 G T MSRB1 Missense_Mutation p.P18H 0.12 deleterious(0.01) possibly_damaging(0.895) TCGA-LN-A4A6-01 16 3777568 3777568 T C CREBBP 3'UTR 0.29 TCGA-LN-A4A6-01 16 48396037 48396037 C T SIAH1 Silent p.A132A 0.23 TCGA-LN-A4A6-01 16 56924229 56924229 C T SLC12A3 Missense_Mutation p.R777W 0.38 deleterious(0) possibly_damaging(0.663) TCGA-LN-A4A6-01 16 57506214 57506214 C T DOK4 3'UTR 0.33 TCGA-LN-A4A6-01 16 67222636 67222636 G A EXOC3L1 Missense_Mutation p.R139W 0.38 deleterious(0) possibly_damaging(0.841) TCGA-LN-A4A6-01 16 69194279 69194279 C G CIRH1A Missense_Mutation p.L489V 0.24 deleterious(0.02) benign(0.203) TCGA-LN-A4A6-01 17 1802203 1802203 G T RPA1 3'UTR 0.30 TCGA-LN-A4A6-01 17 26691418 26691418 G T VTN 3'Flank 0.50 TCGA-LN-A4A6-01 17 7579358 7579358 C A TP53 Missense_Mutation p.R110L 0.54 deleterious(0.04) possibly_damaging(0.898) TCGA-LN-A4A6-01 18 14105961 14105961 G C ZNF519 Missense_Mutation p.S193C 0.43 tolerated(0.13) benign(0.01) TCGA-LN-A4A6-01 18 18559913 18559913 T G ROCK1 Missense_Mutation p.N871T 0.25 tolerated(0.44) benign(0.003) TCGA-LN-A4A6-01 18 44057279 44057279 G - LOXHD1 Intron 0.29 TCGA-LN-A4A6-01 18 55334329 55334329 A G ATP8B1 Silent p.D760D 0.22 TCGA-LN-A4A6-01 18 60241388 60241388 C T ZCCHC2 Nonsense_Mutation p.Q692* 0.12 TCGA-LN-A4A6-01 19 2046658 2046658 T A MKNK2 Silent p.L28L 0.10 TCGA-LN-A4A6-01 19 22941211 22941211 C A ZNF99 Missense_Mutation p.K500N 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A4A6-01 19 39123261 39123261 A T EIF3K Missense_Mutation p.I148F 0.35 deleterious(0) probably_damaging(0.98) TCGA-LN-A4A6-01 19 40542336 40542336 T C ZNF780B Missense_Mutation p.I144V 0.38 tolerated(0.42) benign(0.031) TCGA-LN-A4A6-01 19 44378184 44378185 - T ZNF404 Frame_Shift_Ins p.R61Kfs*4 0.47 TCGA-LN-A4A6-01 19 46273048 46273048 C G DMPK 3'UTR 0.39 TCGA-LN-A4A6-01 19 50207991 50207991 G A CPT1C Missense_Mutation p.V240M 0.18 deleterious(0) probably_damaging(0.975) TCGA-LN-A4A6-01 1 111968031 111968031 G A OVGP1 Silent p.I97I 0.31 TCGA-LN-A4A6-01 1 117699294 117699294 C T VTCN1 Missense_Mutation p.R116Q 0.16 tolerated(0.32) benign(0.108) TCGA-LN-A4A6-01 1 142620909 142620909 C A RP11-417J8.6 RNA 0.09 TCGA-LN-A4A6-01 1 152082711 152082711 C T TCHH Silent p.E994E 0.18 TCGA-LN-A4A6-01 1 153955990 153955990 T C RAB13 Intron 0.19 TCGA-LN-A4A6-01 1 158725436 158725437 - T OR6K6 Frame_Shift_Ins p.G280Wfs*39 0.19 TCGA-LN-A4A6-01 1 172411232 172411232 T C PIGC Silent p.L177L 0.31 TCGA-LN-A4A6-01 1 173454551 173454551 A G PRDX6 Missense_Mutation p.I102V 0.40 deleterious(0.02) benign(0.019) TCGA-LN-A4A6-01 1 214542917 214542918 - A PTPN14 Frame_Shift_Ins p.A1052Cfs*25 0.18 TCGA-LN-A4A6-01 1 216258050 216258050 G A USH2A Silent p.F1719F 0.26 TCGA-LN-A4A6-01 1 23191505 23191525 GCCGGGGTGCCTGCACCCGCT - EPHB2 In_Frame_Del p.R369_C375del 0.45 TCGA-LN-A4A6-01 1 235972743 235972743 C G LYST Missense_Mutation p.D459H 0.19 deleterious(0.04) possibly_damaging(0.602) TCGA-LN-A4A6-01 1 236187381 236187381 C T NID1 Missense_Mutation p.R706Q 0.45 tolerated(0.12) benign(0.014) TCGA-LN-A4A6-01 1 24086135 24086135 A C TCEB3 3'UTR 0.36 TCGA-LN-A4A6-01 1 27432219 27432219 C T SLC9A1 Intron 0.15 TCGA-LN-A4A6-01 1 28897783 28897783 A G TRNAU1AP Missense_Mutation p.Y209C 0.34 deleterious(0) probably_damaging(0.935) TCGA-LN-A4A6-01 1 44435941 44435941 G A DPH2 Missense_Mutation p.V32M 0.22 tolerated(0.09) benign(0.01) TCGA-LN-A4A6-01 1 65349067 65349067 T A JAK1 Missense_Mutation p.E33V 0.15 tolerated(0.29) benign(0.013) TCGA-LN-A4A6-01 1 90493112 90493112 A G ZNF326 Missense_Mutation p.N534S 0.35 tolerated_low_confidence(0.5) unknown(0) TCGA-LN-A4A6-01 1 93648967 93648967 A G CCDC18 Missense_Mutation p.S71G 0.20 tolerated(0.3) benign(0.281) TCGA-LN-A4A6-01 20 10618607 10618607 G A JAG1 3'UTR 0.28 TCGA-LN-A4A6-01 20 48698866 48698866 C T UBE2V1 3'UTR 0.23 TCGA-LN-A4A6-01 20 58495530 58495530 C T SYCP2 Missense_Mutation p.E61K 0.46 tolerated(1) benign(0) TCGA-LN-A4A6-01 20 62374233 62374233 A T SLC2A4RG Nonsense_Mutation p.K352* 0.17 TCGA-LN-A4A6-01 21 34038867 34038867 G A SYNJ1 Missense_Mutation p.L649F 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-LN-A4A6-01 21 35477726 35477726 C A SLC5A3 3'UTR 0.27 TCGA-LN-A4A6-01 21 47250070 47250070 C T PCBP3 Intron 0.24 TCGA-LN-A4A6-01 22 21272499 21272499 C T CRKL Silent p.L93L 0.29 TCGA-LN-A4A6-01 22 22899288 22899288 C T PRAME 5'UTR 0.17 TCGA-LN-A4A6-01 22 31042745 31042745 C T SLC35E4 Silent p.L260L 0.28 TCGA-LN-A4A6-01 22 41277988 41277988 C A XPNPEP3 Missense_Mutation p.S132R 0.07 deleterious(0) probably_damaging(0.996) TCGA-LN-A4A6-01 2 109347782 109347782 C T RANBP2 Missense_Mutation p.S86L 0.14 deleterious(0) benign(0.011) TCGA-LN-A4A6-01 2 150329680 150329680 T A LYPD6 3'UTR 0.25 TCGA-LN-A4A6-01 2 206628610 206628610 G T NRP2 Nonsense_Mutation p.E753* 0.18 TCGA-LN-A4A6-01 2 226447051 226447051 C T NYAP2 Silent p.F306F 0.25 TCGA-LN-A4A6-01 2 241722519 241722519 G A KIF1A Missense_Mutation p.A269V 0.30 deleterious(0) benign(0.415) TCGA-LN-A4A6-01 2 37429056 37429056 A - CEBPZ-AS1 3'UTR 0.35 TCGA-LN-A4A6-01 2 39417577 39417577 C T CDKL4 Missense_Mutation p.G174E 0.27 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A6-01 2 8919884 8919884 G A KIDINS220 Nonsense_Mutation p.Q764* 0.27 TCGA-LN-A4A6-01 2 98994176 98994176 C T CNGA3 Missense_Mutation p.S43L 0.19 tolerated_low_confidence(0.08) benign(0.004) TCGA-LN-A4A6-01 3 101085489 101085489 A G SENP7 Missense_Mutation p.L368P 0.32 tolerated(0.37) benign(0.005) TCGA-LN-A4A6-01 3 122143603 122143603 T C KPNA1 3'UTR 0.27 TCGA-LN-A4A6-01 3 128984416 128984416 A G COPG1 Missense_Mutation p.I417V 0.23 tolerated(0.36) possibly_damaging(0.646) TCGA-LN-A4A6-01 3 137729265 137729265 T A CLDN18 Nonsense_Mutation p.Y66* 0.41 TCGA-LN-A4A6-01 3 156763371 156763371 C - LEKR1 Frame_Shift_Del p.V639Cfs*58 0.24 TCGA-LN-A4A6-01 3 167320050 167320050 A T WDR49 Silent p.I39I 0.15 TCGA-LN-A4A6-01 3 172351286 172351286 C T NCEH1 Silent p.K442K 0.24 TCGA-LN-A4A6-01 3 181431472 181431472 A G SOX2 3'UTR 0.11 TCGA-LN-A4A6-01 3 185766490 185766490 C T ETV5 Missense_Mutation p.A491T 0.38 tolerated(0.23) benign(0.001) TCGA-LN-A4A6-01 3 195513768 195513768 T C MUC4 Silent p.V1561V 0.09 TCGA-LN-A4A6-01 3 33870378 33870378 A G PDCD6IP Missense_Mutation p.I256V 0.23 tolerated(0.96) benign(0.009) TCGA-LN-A4A6-01 3 36534710 36534710 G T STAC Missense_Mutation p.R252L 0.51 tolerated(0.23) possibly_damaging(0.644) TCGA-LN-A4A6-01 4 15562218 15562218 T C CC2D2A Missense_Mutation p.I996T 0.54 deleterious(0) benign(0.255) TCGA-LN-A4A6-01 4 187178462 187178462 A T KLKB1 Missense_Mutation p.K556N 0.31 tolerated(0.15) benign(0.12) TCGA-LN-A4A6-01 4 39915248 39915248 C T PDS5A Nonsense_Mutation p.W325* 0.29 TCGA-LN-A4A6-01 4 46314679 46314679 A C GABRA2 Missense_Mutation p.F104V 0.05 deleterious(0) probably_damaging(1) TCGA-LN-A4A6-01 4 48859371 48859372 - A OCIAD1 Frame_Shift_Ins p.E233Rfs*13 0.46 TCGA-LN-A4A6-01 4 90035968 90035968 G T TIGD2 3'UTR 0.23 TCGA-LN-A4A6-01 5 110434486 110434486 A G WDR36 Missense_Mutation p.I176V 0.57 tolerated(0.23) benign(0.338) TCGA-LN-A4A6-01 5 137600203 137600203 G A GFRA3 Silent p.N42N 0.13 TCGA-LN-A4A6-01 5 13871845 13871845 T G DNAH5 Missense_Mutation p.K1142N 0.21 benign(0.403) TCGA-LN-A4A6-01 5 150946655 150946655 T C FAT2 Missense_Mutation p.N613S 0.54 benign(0.392) TCGA-LN-A4A6-01 5 154181697 154181697 T C LARP1 Missense_Mutation p.M539T 0.11 tolerated(0.15) benign(0.364) TCGA-LN-A4A6-01 5 176683973 176683973 G T NSD1 Missense_Mutation p.C1596F 0.53 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A6-01 5 178139089 178139089 T C ZNF354A Missense_Mutation p.Y597C 0.59 tolerated(0.06) benign(0.009) TCGA-LN-A4A6-01 5 37196019 37196019 A T C5orf42 Missense_Mutation p.F1251Y 0.12 deleterious(0.01) probably_damaging(0.995) TCGA-LN-A4A6-01 5 41000790 41000790 T G MROH2B Missense_Mutation p.K1447T 0.17 tolerated(0.19) benign(0.026) TCGA-LN-A4A6-01 5 9042784 9042784 C A SEMA5A 3'UTR 0.06 TCGA-LN-A4A6-01 6 142510589 142510589 A T VTA1 Missense_Mutation p.R146S 0.41 tolerated(0.08) benign(0.207) TCGA-LN-A4A6-01 6 26197139 26197139 G T HIST1H3D Missense_Mutation p.H114N 0.47 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-LN-A4A6-01 6 30680031 30680031 A T MDC1 Missense_Mutation p.L563H 0.57 deleterious(0.05) benign(0.334) TCGA-LN-A4A6-01 6 4610914 4610914 T G RP4-529N6.1 RNA 0.36 TCGA-LN-A4A6-01 6 46721477 46721477 G A ANKRD66 Missense_Mutation p.R116Q 0.58 tolerated(0.44) benign(0.043) TCGA-LN-A4A6-01 6 82456439 82456439 G T FAM46A 3'UTR 0.27 TCGA-LN-A4A6-01 6 96662685 96662685 A G FUT9 3'UTR 0.50 TCGA-LN-A4A6-01 7 136700551 136700551 C T CHRM2 Silent p.G313G 0.50 TCGA-LN-A4A6-01 7 31732094 31732094 A T PPP1R17 Silent p.S13S 0.30 TCGA-LN-A4A6-01 7 44098544 44098544 G C DBNL Missense_Mutation p.R275T 0.08 deleterious(0.01) possibly_damaging(0.738) TCGA-LN-A4A6-01 7 5942299 5942299 A G CCZ1 Missense_Mutation p.N149S 0.25 tolerated(0.19) possibly_damaging(0.9) TCGA-LN-A4A6-01 7 64452815 64452815 C A ERV3-1 Missense_Mutation p.C197F 0.17 deleterious(0.01) benign(0.299) TCGA-LN-A4A6-01 7 64452816 64452816 A G ERV3-1 Missense_Mutation p.C197R 0.16 deleterious(0.04) benign(0.299) TCGA-LN-A4A6-01 7 65444784 65444784 C T GUSB Missense_Mutation p.A171T 0.28 deleterious(0.01) possibly_damaging(0.827) TCGA-LN-A4A6-01 7 74167460 74167460 A T GTF2I Missense_Mutation p.K864N 0.08 tolerated(0.14) probably_damaging(0.996) TCGA-LN-A4A6-01 7 81591785 81591785 C G CACNA2D1 Missense_Mutation p.S936T 0.19 tolerated(0.23) possibly_damaging(0.7) TCGA-LN-A4A6-01 7 94297997 94297997 A G PEG10 3'UTR 0.21 TCGA-LN-A4A6-01 8 102570829 102570829 C T GRHL2 Missense_Mutation p.T156M 0.16 tolerated(0.15) benign(0.017) TCGA-LN-A4A6-01 8 113299359 113299359 G A CSMD3 Missense_Mutation p.H3089Y 0.37 tolerated(0.56) benign(0.004) TCGA-LN-A4A6-01 8 114290890 114290890 A C CSMD3 Missense_Mutation p.S149A 0.08 tolerated(0.11) benign(0.004) TCGA-LN-A4A6-01 8 133112334 133112334 G A HHLA1 Missense_Mutation p.L99F 0.17 deleterious(0) probably_damaging(0.978) TCGA-LN-A4A6-01 8 144400203 144400203 G C TOP1MT Silent p.L400L 0.51 TCGA-LN-A4A6-01 8 17412103 17412103 A G SLC7A2 Missense_Mutation p.I404V 0.58 tolerated(0.15) benign(0.026) TCGA-LN-A4A6-01 8 91962044 91962044 A G NECAB1 Missense_Mutation p.I290M 0.41 deleterious(0.04) possibly_damaging(0.828) TCGA-LN-A4A6-01 9 125639797 125639797 T C RC3H2 Silent p.P426P 0.47 TCGA-LN-A4A6-01 9 139303480 139303480 G A SDCCAG3 Missense_Mutation p.P87L 0.25 tolerated_low_confidence(0.08) benign(0.02) TCGA-LN-A4A6-01 X 106846540 106846540 C T FRMPD3 Silent p.G1790G 0.36 TCGA-LN-A4A6-01 X 140983065 140983065 C T MAGEC3 Missense_Mutation p.A307V 0.69 deleterious(0.03) benign(0.002) TCGA-LN-A4A6-01 X 140985273 140985273 G C MAGEC3 Splice_Site p.X576_splice 0.63 TCGA-LN-A4A6-01 X 2184836 2184836 C T DHRSX Missense_Mutation p.V181I 0.16 deleterious(0.03) possibly_damaging(0.595) TCGA-LN-A4A6-01 X 3228543 3228543 C T MXRA5 Silent p.A2567A 0.15 TCGA-LN-A4A6-01 X 37300914 37300914 G T PRRG1 Intron 0.65 TCGA-LN-A4A8-01 10 20568836 20568836 C T PLXDC2 3'UTR 0.38 TCGA-LN-A4A8-01 10 56424015 56424015 C T PCDH15 Missense_Mutation p.R3Q 0.63 tolerated_low_confidence(1) benign(0.003) TCGA-LN-A4A8-01 10 75526572 75526572 A T SEC24C Silent p.V618V 0.31 TCGA-LN-A4A8-01 11 102098302 102098302 G C YAP1 Missense_Mutation p.E422D 0.41 tolerated(0.14) possibly_damaging(0.574) TCGA-LN-A4A8-01 11 64978923 64978924 - C CAPN1 3'UTR 0.44 TCGA-LN-A4A8-01 11 74985232 74985232 G A ARRB1 Missense_Mutation p.T267M 0.62 deleterious(0.01) possibly_damaging(0.863) TCGA-LN-A4A8-01 11 9304976 9304976 C G TMEM41B Missense_Mutation p.E291Q 0.07 tolerated(0.19) benign(0.126) TCGA-LN-A4A8-01 11 9749710 9749710 A T SWAP70 Missense_Mutation p.K251N 0.22 deleterious(0) probably_damaging(0.928) TCGA-LN-A4A8-01 12 110383086 110383086 C A GIT2 Silent p.S570S 0.44 TCGA-LN-A4A8-01 12 21448561 21448561 G A SLCO1A2 Missense_Mutation p.S414L 0.12 tolerated(0.17) benign(0.008) TCGA-LN-A4A8-01 12 3736823 3736823 G A EFCAB4B Silent p.A595A 0.05 TCGA-LN-A4A8-01 12 49161441 49161441 G A ADCY6 3'UTR 0.08 TCGA-LN-A4A8-01 12 52380769 52380769 A T ACVR1B Intron 0.57 TCGA-LN-A4A8-01 12 56965518 56965518 A G RBMS2 Missense_Mutation p.N141D 0.60 deleterious(0) benign(0.366) TCGA-LN-A4A8-01 12 6128641 6128641 G A VWF Missense_Mutation p.R1315C 0.09 deleterious(0) probably_damaging(0.992) TCGA-LN-A4A8-01 12 6924124 6924124 G A CD4 Silent p.K191K 0.12 TCGA-LN-A4A8-01 12 72312261 72312261 G T TBC1D15 Missense_Mutation p.C528F 0.46 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A8-01 12 7649729 7649729 T C CD163 Missense_Mutation p.K260R 0.21 tolerated(0.11) benign(0.017) TCGA-LN-A4A8-01 12 78400821 78400821 A G NAV3 Silent p.K501K 0.33 TCGA-LN-A4A8-01 12 94772658 94772658 T A CCDC41 Missense_Mutation p.E237V 0.47 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A8-01 12 96387577 96387577 C G HAL Missense_Mutation p.R175T 0.11 tolerated(0.12) benign(0.016) TCGA-LN-A4A8-01 12 99138763 99138763 C A ANKS1B Intron 0.31 TCGA-LN-A4A8-01 13 33760148 33760148 G T STARD13 Intron 0.46 TCGA-LN-A4A8-01 13 41379274 41379274 C G SLC25A15 Missense_Mutation p.A112G 0.25 deleterious(0) probably_damaging(0.936) TCGA-LN-A4A8-01 13 53203463 53203463 G T HNRNPA1L2 5'UTR 0.24 TCGA-LN-A4A8-01 13 99358508 99358508 C G SLC15A1 Splice_Site p.X384_splice 0.07 TCGA-LN-A4A8-01 14 24041033 24041033 C T JPH4 Silent p.L416L 0.12 TCGA-LN-A4A8-01 14 32030697 32030723 GGTGGCGGGGCCACTGCCCCGCTTGGG - NUBPL In_Frame_Del p.G19_G27del 0.43 TCGA-LN-A4A8-01 14 34903750 34903750 A C SPTSSA 3'UTR 0.35 TCGA-LN-A4A8-01 14 52471901 52471901 A G NID2 3'UTR 0.25 TCGA-LN-A4A8-01 14 61275047 61275047 C T MNAT1 Silent p.F107F 0.12 TCGA-LN-A4A8-01 14 64066414 64066414 C T WDR89 Missense_Mutation p.D83N 0.40 tolerated(0.31) benign(0.033) TCGA-LN-A4A8-01 14 65542289 65542289 T C MAX 3'UTR 0.41 TCGA-LN-A4A8-01 14 74181867 74181867 G C ELMSAN1 3'UTR 0.18 TCGA-LN-A4A8-01 14 75245163 75245163 A G YLPM1 Missense_Mutation p.Y296C 0.38 unknown(0) TCGA-LN-A4A8-01 14 75277108 75277108 G A YLPM1 Missense_Mutation p.R1738Q 0.61 possibly_damaging(0.797) TCGA-LN-A4A8-01 15 63548779 63548779 G C RAB8B Missense_Mutation p.E134Q 0.11 tolerated(0.05) possibly_damaging(0.641) TCGA-LN-A4A8-01 15 93515583 93515583 C G CHD2 Missense_Mutation p.S814C 0.07 deleterious(0) probably_damaging(0.972) TCGA-LN-A4A8-01 16 20814939 20814939 C G ERI2 Missense_Mutation p.G26A 0.16 tolerated(0.09) benign(0.013) TCGA-LN-A4A8-01 16 2161577 2161577 C T PKD1 Silent p.V1197V 0.32 TCGA-LN-A4A8-01 16 21658708 21658708 C A IGSF6 Missense_Mutation p.C58F 0.39 deleterious(0) probably_damaging(1) TCGA-LN-A4A8-01 16 2487242 2487242 C G CCNF Missense_Mutation p.I153M 0.09 deleterious(0) probably_damaging(0.997) TCGA-LN-A4A8-01 16 30773091 30773091 G C C16orf93 5'UTR 0.09 TCGA-LN-A4A8-01 16 3406771 3406771 C G OR2C1 Missense_Mutation p.F277L 0.35 deleterious(0.02) probably_damaging(0.996) TCGA-LN-A4A8-01 16 48180286 48180286 C A ABCC12 Missense_Mutation p.R17L 0.44 tolerated(0.07) benign(0.051) TCGA-LN-A4A8-01 16 50334758 50334758 C T ADCY7 Silent p.N403N 0.07 TCGA-LN-A4A8-01 16 54966749 54966749 G C IRX5 Missense_Mutation p.E197Q 0.28 deleterious(0.01) probably_damaging(0.932) TCGA-LN-A4A8-01 16 66642288 66642289 - CC CMTM3 Frame_Shift_Ins p.L76Pfs*15 0.18 TCGA-LN-A4A8-01 16 68901087 68901087 C G TANGO6 Missense_Mutation p.Q320E 0.08 deleterious(0.01) benign(0.271) TCGA-LN-A4A8-01 16 69389602 69389602 G A TERF2 3'UTR 0.31 TCGA-LN-A4A8-01 16 732067 732067 G A STUB1 Silent p.E220E 0.15 TCGA-LN-A4A8-01 16 81324181 81324181 G C BCMO1 Nonstop_Mutation p.*548Sext*60 0.16 TCGA-LN-A4A8-01 16 87441560 87441560 C G ZCCHC14 3'UTR 0.28 TCGA-LN-A4A8-01 17 10451186 10451186 G A MYH2 Nonsense_Mutation p.R18* 0.21 TCGA-LN-A4A8-01 17 37814733 37814733 C T STARD3 Missense_Mutation p.L169F 0.56 deleterious(0.02) benign(0.35) TCGA-LN-A4A8-01 17 40832242 40832242 C A CCR10 Missense_Mutation p.V140L 0.54 deleterious(0.04) benign(0.022) TCGA-LN-A4A8-01 17 56270195 56270195 C T EPX 5'UTR 0.45 TCGA-LN-A4A8-01 17 66508651 66508651 C G PRKAR1A 5'UTR 0.39 TCGA-LN-A4A8-01 17 66508665 66508665 C T PRKAR1A 5'UTR 0.42 TCGA-LN-A4A8-01 17 66873731 66873731 C G ABCA8 Silent p.V1336V 0.46 TCGA-LN-A4A8-01 17 73008936 73008936 C G ICT1 Missense_Mutation p.S52C 0.46 deleterious(0) possibly_damaging(0.855) TCGA-LN-A4A8-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.74 deleterious(0) probably_damaging(1) TCGA-LN-A4A8-01 18 14763720 14763720 C T ANKRD30B Missense_Mutation p.P286S 0.35 deleterious(0.04) benign(0.175) TCGA-LN-A4A8-01 18 21111652 21111652 G A C18orf8 Missense_Mutation p.R653K 0.23 tolerated_low_confidence(1) benign(0) TCGA-LN-A4A8-01 18 47017676 47017676 C T RPL17 Intron 0.11 TCGA-LN-A4A8-01 18 56651290 56651290 G A ZNF532 Silent p.L1166L 0.08 TCGA-LN-A4A8-01 18 61569754 61569754 C T SERPINB2 Silent p.F265F 0.08 TCGA-LN-A4A8-01 19 10270336 10270336 G A DNMT1 Silent p.F426F 0.07 TCGA-LN-A4A8-01 19 10666007 10666008 - AA KRI1 Frame_Shift_Ins p.K552Lfs*4 0.31 TCGA-LN-A4A8-01 19 35175973 35175973 G A ZNF302 Missense_Mutation p.R344K 0.33 tolerated(1) benign(0.007) TCGA-LN-A4A8-01 19 42790978 42790978 C G CIC Silent p.V41V 0.09 TCGA-LN-A4A8-01 19 42793154 42793154 C T CIC Missense_Mutation p.S349L 0.20 possibly_damaging(0.514) TCGA-LN-A4A8-01 19 42861130 42861130 G C MEGF8 Missense_Mutation p.E1542D 0.14 tolerated(0.26) possibly_damaging(0.674) TCGA-LN-A4A8-01 19 43969651 43969651 G C LYPD3 Missense_Mutation p.R25G 0.14 tolerated(0.32) benign(0.001) TCGA-LN-A4A8-01 19 48048783 48048783 G A ZNF541 Missense_Mutation p.P335S 0.28 tolerated(0.19) benign(0.091) TCGA-LN-A4A8-01 19 48833676 48833676 C T EMP3 Silent p.P147P 0.33 TCGA-LN-A4A8-01 19 51986564 51986564 C A CEACAM18 Missense_Mutation p.P384T 0.43 tolerated_low_confidence(0.1) benign(0.073) TCGA-LN-A4A8-01 19 53014448 53014448 C T ZNF578 Nonsense_Mutation p.R272* 0.05 TCGA-LN-A4A8-01 19 54973144 54973144 G A LENG8 3'UTR 0.32 TCGA-LN-A4A8-01 19 54973717 54973717 G A LENG9 Silent p.N353N 0.25 TCGA-LN-A4A8-01 19 55452840 55452840 G C NLRP7 Silent p.L80L 0.07 TCGA-LN-A4A8-01 19 57802468 57802468 G C ZNF460 Missense_Mutation p.E187Q 0.27 tolerated(0.56) possibly_damaging(0.649) TCGA-LN-A4A8-01 1 144881578 144881578 C T PDE4DIP Silent p.A1206A 0.15 TCGA-LN-A4A8-01 1 150039956 150039956 G C VPS45 Missense_Mutation p.M14I 0.09 tolerated(0.08) probably_damaging(0.945) TCGA-LN-A4A8-01 1 150238561 150238561 T - APH1A Frame_Shift_Del p.Y256Ffs*14 0.26 TCGA-LN-A4A8-01 1 151804259 151804259 C T RORC 5'UTR 0.09 TCGA-LN-A4A8-01 1 155247568 155247568 C T HCN3 Missense_Mutation p.R63W 0.14 deleterious(0) probably_damaging(0.978) TCGA-LN-A4A8-01 1 156618415 156618415 G A BCAN Silent p.A275A 0.30 TCGA-LN-A4A8-01 1 175096214 175096214 C T TNN Missense_Mutation p.T1013I 0.06 deleterious(0.01) possibly_damaging(0.694) TCGA-LN-A4A8-01 1 186280961 186280961 T C TPR 3'UTR 0.36 TCGA-LN-A4A8-01 1 200938777 200938777 T A KIF21B 3'Flank 0.43 TCGA-LN-A4A8-01 1 203669435 203669435 G A ATP2B4 Missense_Mutation p.D251N 0.05 tolerated(0.15) benign(0.423) TCGA-LN-A4A8-01 1 227181864 227181864 C T CDC42BPA 3'UTR 0.20 TCGA-LN-A4A8-01 1 227751338 227751338 G T ZNF678 5'UTR 0.42 TCGA-LN-A4A8-01 1 228481268 228481268 C T OBSCN Silent p.Y4123Y 0.07 TCGA-LN-A4A8-01 1 24408891 24408891 C T MYOM3 Intron 0.39 TCGA-LN-A4A8-01 1 244217284 244217284 G A ZBTB18 Missense_Mutation p.D70N 0.15 deleterious(0) benign(0.057) TCGA-LN-A4A8-01 1 247655131 247655131 G T OR2W5 RNA 0.28 TCGA-LN-A4A8-01 1 32205214 32205214 G C BAI2 Silent p.P730P 0.39 TCGA-LN-A4A8-01 1 44442966 44442966 C G ATP6V0B Intron 0.48 TCGA-LN-A4A8-01 1 47883576 47883576 C G FOXE3 3'UTR 0.26 TCGA-LN-A4A8-01 1 63894627 63894629 CTC - ALG6 In_Frame_Del p.L387del 0.35 TCGA-LN-A4A8-01 1 70819708 70819708 G C ANKRD13C Silent p.L128L 0.18 TCGA-LN-A4A8-01 1 7839798 7839798 C G VAMP3 3'UTR 0.36 TCGA-LN-A4A8-01 1 92846387 92846387 G T RPAP2 Nonsense_Mutation p.E599* 0.44 TCGA-LN-A4A8-01 20 19264910 19264910 C G SLC24A3 Intron 0.05 TCGA-LN-A4A8-01 20 43922341 43922341 G A MATN4 3'UTR 0.36 TCGA-LN-A4A8-01 20 4771185 4771185 C T RASSF2 Missense_Mutation p.R150H 0.58 tolerated(0.48) benign(0.017) TCGA-LN-A4A8-01 20 49366851 49366851 G C PARD6B Missense_Mutation p.E315D 0.33 tolerated_low_confidence(0.45) benign(0.015) TCGA-LN-A4A8-01 20 49367006 49367006 G A PARD6B Missense_Mutation p.G367E 0.50 deleterious_low_confidence(0) benign(0.023) TCGA-LN-A4A8-01 21 33951108 33951108 G C TCP10L Missense_Mutation p.L132V 0.04 tolerated(0.15) benign(0.164) TCGA-LN-A4A8-01 22 17578725 17578725 C T IL17RA Silent p.L68L 0.36 TCGA-LN-A4A8-01 22 19885562 19885562 C A TXNRD2 Missense_Mutation p.Q258H 0.26 deleterious(0) probably_damaging(0.986) TCGA-LN-A4A8-01 22 29450653 29450653 G A ZNRF3 3'UTR 0.43 TCGA-LN-A4A8-01 22 31969041 31969041 C T SFI1 Intron 0.34 TCGA-LN-A4A8-01 22 36677427 36677427 T C MYH9 3'UTR 0.29 TCGA-LN-A4A8-01 2 100210147 100210147 A G AFF3 Missense_Mutation p.V684A 0.29 tolerated(0.46) benign(0.007) TCGA-LN-A4A8-01 2 120395988 120395988 C T PCDP1 Missense_Mutation p.H710Y 0.08 deleterious(0) benign(0.43) TCGA-LN-A4A8-01 2 135213572 135213572 A G TMEM163 3'UTR 0.37 TCGA-LN-A4A8-01 2 136570212 136570212 C G LCT Silent p.L674L 0.12 TCGA-LN-A4A8-01 2 179595754 179595754 G A TTN Silent p.L5880L 0.35 TCGA-LN-A4A8-01 2 191366418 191366418 G A MFSD6 3'UTR 0.17 TCGA-LN-A4A8-01 2 219529070 219529070 G A RNF25 Silent p.G330G 0.36 TCGA-LN-A4A8-01 2 225658132 225658133 - CT DOCK10 Frame_Shift_Ins p.Y1733Sfs*3 0.21 TCGA-LN-A4A8-01 2 231860992 231860992 G A SPATA3 Missense_Mutation p.R15Q 0.34 deleterious(0.05) benign(0.417) TCGA-LN-A4A8-01 2 232577559 232577559 T C PTMA Nonstop_Mutation p.*112Qext*9 0.12 TCGA-LN-A4A8-01 2 242207945 242207945 T C HDLBP 5'UTR 0.23 TCGA-LN-A4A8-01 2 242407662 242407662 G C FARP2 Missense_Mutation p.Q667H 0.07 deleterious(0.03) probably_damaging(1) TCGA-LN-A4A8-01 2 71753404 71753404 C A DYSF Silent p.R402R 0.20 TCGA-LN-A4A8-01 2 71892349 71892349 C T DYSF Silent p.F1744F 0.39 TCGA-LN-A4A8-01 2 84912583 84912583 G C DNAH6 Silent p.L2350L 0.14 TCGA-LN-A4A8-01 3 118913174 118913174 A G UPK1B Missense_Mutation p.M193V 0.25 tolerated(0.3) benign(0.024) TCGA-LN-A4A8-01 3 136141639 136141639 C G STAG1 Missense_Mutation p.E602Q 0.23 deleterious(0.02) possibly_damaging(0.501) TCGA-LN-A4A8-01 3 141811953 141811953 G A TFDP2 Missense_Mutation p.T11I 0.07 tolerated_low_confidence(0.07) benign(0.001) TCGA-LN-A4A8-01 3 142168307 142168307 T A ATR Silent p.L2633L 0.14 TCGA-LN-A4A8-01 3 155547652 155547652 T C SLC33A1 Missense_Mutation p.N436S 0.24 tolerated(0.31) benign(0.102) TCGA-LN-A4A8-01 3 184062689 184062689 A T FAM131A Missense_Mutation p.Q344H 0.30 deleterious(0) benign(0.264) TCGA-LN-A4A8-01 3 187086357 187086357 A T RTP4 Missense_Mutation p.K43M 0.32 deleterious(0.05) probably_damaging(0.971) TCGA-LN-A4A8-01 3 192980950 192980950 G C HRASLS Missense_Mutation p.A216P 0.23 tolerated(0.42) benign(0.046) TCGA-LN-A4A8-01 3 42707811 42707811 A T ZBTB47 3'Flank 0.56 TCGA-LN-A4A8-01 3 49454779 49454779 A G AMT 3'UTR 0.62 TCGA-LN-A4A8-01 3 49714115 49714115 G T APEH Missense_Mutation p.R273L 0.54 tolerated(0.17) benign(0.122) TCGA-LN-A4A8-01 3 57619036 57619036 G A DENND6A Nonsense_Mutation p.R437* 0.48 TCGA-LN-A4A8-01 3 97888442 97888442 C G OR5H15 Nonsense_Mutation p.S300* 0.12 TCGA-LN-A4A8-01 4 126239676 126239676 G A FAT4 Missense_Mutation p.G704R 0.36 possibly_damaging(0.555) TCGA-LN-A4A8-01 4 148887900 148887900 G C ARHGAP10 Silent p.L542L 0.12 TCGA-LN-A4A8-01 4 148999989 148999989 T C NR3C2 3'UTR 0.37 TCGA-LN-A4A8-01 4 156632055 156632055 G T GUCY1A3 Missense_Mutation p.E246D 0.45 tolerated(0.39) benign(0.002) TCGA-LN-A4A8-01 4 162306700 162306700 G T FSTL5 3'UTR 0.50 TCGA-LN-A4A8-01 4 164394764 164394764 C T TKTL2 Silent p.S41S 0.49 TCGA-LN-A4A8-01 4 170608906 170608906 C T CLCN3 Missense_Mutation p.S139L 0.07 deleterious(0.01) probably_damaging(0.981) TCGA-LN-A4A8-01 4 41648815 41648815 C G LIMCH1 Missense_Mutation p.P524A 0.08 deleterious(0) probably_damaging(0.99) TCGA-LN-A4A8-01 4 74027042 74027042 C T ANKRD17 Missense_Mutation p.D191N 0.08 benign(0.102) TCGA-LN-A4A8-01 4 78652538 78652538 C T CNOT6L Intron 0.30 TCGA-LN-A4A8-01 4 8620227 8620227 C G CPZ Silent p.V525V 0.29 TCGA-LN-A4A8-01 4 99049692 99049692 G A STPG2 Missense_Mutation p.P92S 0.11 deleterious(0) possibly_damaging(0.838) TCGA-LN-A4A8-01 5 149901145 149901145 A G NDST1 Missense_Mutation p.K110R 0.54 tolerated(0.76) benign(0.006) TCGA-LN-A4A8-01 5 173383260 173383260 A G CPEB4 3'UTR 0.48 TCGA-LN-A4A8-01 5 176812703 176812703 G A SLC34A1 5'UTR 0.43 TCGA-LN-A4A8-01 5 24488069 24488069 A G CDH10 Silent p.I690I 0.56 TCGA-LN-A4A8-01 5 33457431 33457431 C A TARS Missense_Mutation p.P336T 0.57 deleterious(0) probably_damaging(0.959) TCGA-LN-A4A8-01 6 102376504 102376504 C G GRIK2 Missense_Mutation p.F694L 0.15 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A8-01 6 121768356 121768356 C T GJA1 Silent p.V121V 0.33 TCGA-LN-A4A8-01 6 138607140 138607140 C G KIAA1244 Missense_Mutation p.T840R 0.30 tolerated(0.58) benign(0.031) TCGA-LN-A4A8-01 6 139238693 139238693 T C REPS1 Missense_Mutation p.R533G 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A4A8-01 6 149795653 149795653 G A ZC3H12D Silent p.F9F 0.16 TCGA-LN-A4A8-01 6 155764431 155764431 G A NOX3 Silent p.L154L 0.09 TCGA-LN-A4A8-01 6 168708169 168708169 C T DACT2 Silent p.L756L 0.10 TCGA-LN-A4A8-01 6 24178761 24178761 C T DCDC2 Missense_Mutation p.E375K 0.34 tolerated(0.1) benign(0.05) TCGA-LN-A4A8-01 6 26045930 26045930 G A HIST1H3C Missense_Mutation p.E98K 0.05 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-LN-A4A8-01 6 29274876 29274876 G A OR14J1 Missense_Mutation p.R137H 0.38 tolerated(0.05) benign(0.013) TCGA-LN-A4A8-01 6 30312963 30312963 G A RPP21 Silent p.V5V 0.29 TCGA-LN-A4A8-01 6 36730753 36730753 C A CPNE5 Nonsense_Mutation p.E266* 0.54 TCGA-LN-A4A8-01 6 43588627 43588627 T C GTPBP2 3'UTR 0.35 TCGA-LN-A4A8-01 6 96660202 96660202 C T FUT9 3'UTR 0.40 TCGA-LN-A4A8-01 7 148312549 148312549 C G C7orf33 3'UTR 0.10 TCGA-LN-A4A8-01 7 151833719 151833719 C T KMT2C 3'UTR 0.17 TCGA-LN-A4A8-01 7 151846214 151846214 T C KMT2C Silent p.Q4266Q 0.55 TCGA-LN-A4A8-01 7 16685805 16685805 C T BZW2 5'UTR 0.55 TCGA-LN-A4A8-01 7 75916517 75916517 G A SRRM3 3'UTR 0.14 TCGA-LN-A4A8-01 8 10466069 10466069 C G RP1L1 Missense_Mutation p.E1847Q 0.28 unknown(0) TCGA-LN-A4A8-01 8 10466966 10466966 G T RP1L1 Missense_Mutation p.Q1548K 0.24 unknown(0) TCGA-LN-A4A8-01 8 125498688 125498688 C T RNF139 Silent p.F266F 0.36 TCGA-LN-A4A8-01 8 126062872 126062872 C G KIAA0196 Missense_Mutation p.R711S 0.12 deleterious(0) probably_damaging(1) TCGA-LN-A4A8-01 8 37620177 37620177 G A PROSC 5'UTR 0.14 TCGA-LN-A4A8-01 8 51569521 51569521 G T SNTG1 Missense_Mutation p.R301I 0.31 deleterious(0) benign(0.187) TCGA-LN-A4A8-01 8 94937606 94937606 G A PDP1 3'UTR 0.32 TCGA-LN-A4A8-01 9 112705193 112705193 C A PALM2 Missense_Mutation p.Q242K 0.33 deleterious(0.03) possibly_damaging(0.625) TCGA-LN-A4A8-01 9 123688378 123688378 G A TRAF1 5'UTR 0.29 TCGA-LN-A4A8-01 9 12775744 12775744 A T LURAP1L Missense_Mutation p.R10S 0.58 deleterious(0) benign(0.306) TCGA-LN-A4A8-01 9 130506980 130506980 G A SH2D3C Missense_Mutation p.P555S 0.39 deleterious(0) possibly_damaging(0.81) TCGA-LN-A4A8-01 9 131458086 131458086 T A SET 3'UTR 0.41 TCGA-LN-A4A8-01 9 33797844 33797844 T A PRSS3 Missense_Mutation p.L130Q 0.14 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A8-01 X 112065833 112065833 C G AMOT Missense_Mutation p.L174F 0.18 unknown(0) TCGA-LN-A4A8-01 X 118893624 118893624 G A SOWAHD 3'UTR 0.55 TCGA-LN-A4A8-01 X 148072955 148072955 G C AFF2 3'UTR 0.67 TCGA-LN-A4A8-01 X 1506281 1506281 G A SLC25A6 Silent p.I210I 0.28 TCGA-LN-A4A8-01 X 48650412 48650412 G A GATA1 Missense_Mutation p.G128S 0.68 tolerated(0.46) benign(0.001) TCGA-LN-A4A8-01 X 85994844 85994844 C A DACH2 Missense_Mutation p.S400Y 0.70 deleterious(0.03) probably_damaging(0.976) TCGA-LN-A4A8-01 X 85994845 85994845 C G DACH2 Silent p.S400S 0.74 TCGA-LN-A4A9-01 10 105127805 105127805 C A TAF5 Missense_Mutation p.P20Q 0.74 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-LN-A4A9-01 10 115618346 115618346 A G NHLRC2 Missense_Mutation p.I80V 0.39 tolerated(1) benign(0.006) TCGA-LN-A4A9-01 10 124554869 124554869 T G DMBT1P1 RNA 0.66 TCGA-LN-A4A9-01 10 63661443 63661443 G C ARID5B 5'UTR 0.28 TCGA-LN-A4A9-01 10 68858032 68858032 T G LRRTM3 3'UTR 0.35 TCGA-LN-A4A9-01 10 89117727 89117727 G A NUTM2D 5'UTR 0.18 TCGA-LN-A4A9-01 10 89487163 89487163 G A PAPSS2 Missense_Mutation p.D335N 0.27 tolerated(1) benign(0.003) TCGA-LN-A4A9-01 10 94694131 94694131 G A EXOC6 Missense_Mutation p.D362N 0.25 deleterious(0.03) benign(0.056) TCGA-LN-A4A9-01 11 101323836 101323836 C A TRPC6 Silent p.G882G 0.31 TCGA-LN-A4A9-01 11 113103878 113103878 C A NCAM1 Missense_Mutation p.S560Y 0.44 deleterious(0) probably_damaging(1) TCGA-LN-A4A9-01 11 113144552 113144552 G A NCAM1 Intron 0.73 TCGA-LN-A4A9-01 11 133790066 133790066 C A IGSF9B Missense_Mutation p.R1185M 0.73 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-LN-A4A9-01 11 18361125 18361125 C G GTF2H1 Silent p.P176P 0.31 TCGA-LN-A4A9-01 11 27722334 27722334 G T BDNF Intron 0.80 TCGA-LN-A4A9-01 11 3050660 3050660 T A CARS Missense_Mutation p.E272V 0.74 tolerated(0.05) benign(0.213) TCGA-LN-A4A9-01 11 34118131 34118131 A G CAPRIN1 Missense_Mutation p.Y604C 0.47 deleterious(0) probably_damaging(0.935) TCGA-LN-A4A9-01 11 46401663 46401663 C G DGKZ 3'UTR 0.42 TCGA-LN-A4A9-01 11 64511413 64511413 C G RASGRP2 Intron 0.25 TCGA-LN-A4A9-01 11 64622896 64622896 G C EHD1 Missense_Mutation p.S326R 0.23 tolerated(0.21) benign(0.001) TCGA-LN-A4A9-01 11 71544281 71544281 C G DEFB108B Missense_Mutation p.F12L 0.32 tolerated(0.64) benign(0) TCGA-LN-A4A9-01 11 71931984 71931984 G A FOLR2 Missense_Mutation p.R74H 0.52 tolerated(0.32) benign(0.009) TCGA-LN-A4A9-01 11 74546963 74546963 C T RNF169 Nonsense_Mutation p.Q439* 0.39 TCGA-LN-A4A9-01 11 75298065 75298065 C G MAP6 3'UTR 0.35 TCGA-LN-A4A9-01 11 869903 869903 G A CHID1 Silent p.I404I 0.36 TCGA-LN-A4A9-01 11 94134350 94134350 C A GPR83 Missense_Mutation p.G22C 0.77 deleterious_low_confidence(0.05) benign(0.137) TCGA-LN-A4A9-01 12 1023153 1023164 TCTGGGTCACCA - RAD52 In_Frame_Del p.M364_Q367del 0.39 TCGA-LN-A4A9-01 12 104995745 104995745 G T CHST11 Silent p.L60L 0.34 TCGA-LN-A4A9-01 12 106459585 106459585 A C NUAK1 3'UTR 0.29 TCGA-LN-A4A9-01 12 111748077 111748077 C T CUX2 Silent p.F497F 0.71 TCGA-LN-A4A9-01 12 112607445 112607445 C T HECTD4 Missense_Mutation p.E3878K 0.25 benign(0.262) TCGA-LN-A4A9-01 12 123187417 123187417 C G HCAR2 Missense_Mutation p.K138N 0.43 tolerated(0.07) possibly_damaging(0.857) TCGA-LN-A4A9-01 12 129559126 129559126 T G TMEM132D Missense_Mutation p.K865T 0.20 tolerated(0.16) benign(0.055) TCGA-LN-A4A9-01 12 133197878 133197878 C A P2RX2 Missense_Mutation p.R315S 0.40 deleterious(0) probably_damaging(1) TCGA-LN-A4A9-01 12 3104056 3104056 G T TEAD4 Missense_Mutation p.V42L 0.72 deleterious(0) probably_damaging(0.997) TCGA-LN-A4A9-01 12 419007 419007 C T KDM5A Missense_Mutation p.E1114K 0.40 deleterious(0.01) benign(0.097) TCGA-LN-A4A9-01 12 4413723 4413723 C A CCND2 3'UTR 0.52 TCGA-LN-A4A9-01 12 56827937 56827937 C T TIMELESS Missense_Mutation p.M6I 0.41 deleterious(0.01) possibly_damaging(0.824) TCGA-LN-A4A9-01 12 57348715 57348715 C A RDH16 Missense_Mutation p.V183L 0.41 tolerated(0.06) benign(0.291) TCGA-LN-A4A9-01 12 66839162 66839162 G T GRIP1 Missense_Mutation p.T442K 0.26 deleterious(0) probably_damaging(0.963) TCGA-LN-A4A9-01 12 69973116 69973116 A G FRS2 3'UTR 0.07 TCGA-LN-A4A9-01 12 81102768 81102768 G A MYF6 3'UTR 0.52 TCGA-LN-A4A9-01 12 9254052 9254052 G C A2M Missense_Mutation p.F495L 0.40 deleterious(0) benign(0.14) TCGA-LN-A4A9-01 12 93169819 93169819 A C EEA1 Missense_Mutation p.C1402G 0.24 deleterious(0) probably_damaging(1) TCGA-LN-A4A9-01 12 96259806 96259806 G C SNRPF Missense_Mutation p.R73T 0.55 deleterious(0.03) possibly_damaging(0.612) TCGA-LN-A4A9-01 13 103384753 103384753 C G CCDC168 Missense_Mutation p.M1469I 0.40 tolerated(0.12) unknown(0) TCGA-LN-A4A9-01 13 103483940 103483940 C G BIVM-ERCC5 Silent p.T281T 0.44 TCGA-LN-A4A9-01 13 19747964 19747964 G T TUBA3C 3'UTR 0.40 TCGA-LN-A4A9-01 13 52606992 52606992 C T UTP14C 3'UTR 0.35 TCGA-LN-A4A9-01 13 53001132 53001132 C T VPS36 Missense_Mutation p.E211K 0.43 deleterious(0.01) benign(0.127) TCGA-LN-A4A9-01 13 76397973 76397973 G A LMO7 Silent p.G738G 0.30 TCGA-LN-A4A9-01 14 107048753 107048753 G C IGHV3-53 Silent p.S89S 0.12 TCGA-LN-A4A9-01 14 20296476 20296476 G A OR4N2 Missense_Mutation p.R290H 0.45 deleterious(0.02) benign(0.032) TCGA-LN-A4A9-01 14 22459118 22459118 C G TRAV16 Missense_Mutation p.H90Q 0.45 deleterious(0.02) benign(0.337) TCGA-LN-A4A9-01 14 23415895 23415895 G C HAUS4 Missense_Mutation p.H311D 0.34 tolerated(0.17) benign(0.088) TCGA-LN-A4A9-01 14 23865995 23865995 C T MYH6 Missense_Mutation p.E734K 0.31 tolerated(0.23) possibly_damaging(0.655) TCGA-LN-A4A9-01 14 50201373 50201373 G A KLHDC1 Missense_Mutation p.R297K 0.25 tolerated(1) benign(0.003) TCGA-LN-A4A9-01 14 51239778 51239778 G A NIN Silent p.D234D 0.22 TCGA-LN-A4A9-01 14 64936794 64936794 C G AKAP5 3'UTR 0.30 TCGA-LN-A4A9-01 14 70990362 70990362 C A ADAM20 Missense_Mutation p.K421N 0.75 tolerated(0.53) benign(0.001) TCGA-LN-A4A9-01 14 86092741 86092741 C T FLRT2 3'UTR 0.20 TCGA-LN-A4A9-01 14 91110514 91110514 C A TTC7B Missense_Mutation p.Q543H 0.55 tolerated(0.12) possibly_damaging(0.885) TCGA-LN-A4A9-01 15 41108162 41108162 C T PPP1R14D Silent p.Q162Q 0.41 TCGA-LN-A4A9-01 15 43029216 43029216 A C CDAN1 Missense_Mutation p.S29A 0.64 tolerated(0.5) benign(0.268) TCGA-LN-A4A9-01 15 44792002 44792002 C A CTDSPL2 Silent p.V320V 0.18 TCGA-LN-A4A9-01 15 48577319 48577319 A T SLC12A1 Missense_Mutation p.L834F 0.74 tolerated(0.71) possibly_damaging(0.809) TCGA-LN-A4A9-01 15 63866552 63866552 G C USP3 Missense_Mutation p.R349T 0.23 tolerated(0.42) probably_damaging(0.935) TCGA-LN-A4A9-01 15 86269664 86269664 G A AKAP13 Missense_Mutation p.D2261N 0.38 deleterious(0) probably_damaging(0.989) TCGA-LN-A4A9-01 15 90163009 90163009 T C TICRR Silent p.Y1030Y 0.47 TCGA-LN-A4A9-01 16 27357918 27357918 G C IL4R Missense_Mutation p.W164C 0.31 deleterious(0.01) possibly_damaging(0.582) TCGA-LN-A4A9-01 16 2871496 2871496 G C PRSS21 Missense_Mutation p.E279Q 0.19 tolerated(0.43) benign(0.026) TCGA-LN-A4A9-01 16 30456364 30456364 C G SEPHS2 Missense_Mutation p.V229L 0.39 benign(0.067) TCGA-LN-A4A9-01 16 31098169 31098169 T G RP11-196G11.1 3'Flank 0.37 TCGA-LN-A4A9-01 16 32888910 32888910 G A SLC6A10P RNA 0.18 TCGA-LN-A4A9-01 16 3348998 3348998 G A TIGD7 Silent p.F539F 0.57 TCGA-LN-A4A9-01 16 4625340 4625340 G C C16orf96 Missense_Mutation p.E287Q 0.21 tolerated(0.43) possibly_damaging(0.622) TCGA-LN-A4A9-01 16 4942146 4942146 G C PPL Missense_Mutation p.F573L 0.28 deleterious(0.04) probably_damaging(0.998) TCGA-LN-A4A9-01 16 58438692 58438692 G C GINS3 3'UTR 0.41 TCGA-LN-A4A9-01 16 68900993 68900993 T C TANGO6 Silent p.D288D 0.52 TCGA-LN-A4A9-01 16 84228699 84228699 G A ADAD2 Missense_Mutation p.R283H 0.12 tolerated(0.12) possibly_damaging(0.596) TCGA-LN-A4A9-01 16 88495087 88495087 G C ZNF469 Missense_Mutation p.Q403H 0.28 benign(0.265) TCGA-LN-A4A9-01 16 89952360 89952360 C G TCF25 Silent p.L178L 0.35 TCGA-LN-A4A9-01 17 11659960 11659960 C G DNAH9 Missense_Mutation p.R2272G 0.63 possibly_damaging(0.72) TCGA-LN-A4A9-01 17 16004598 16004598 C T NCOR1 Missense_Mutation p.D886N 0.40 possibly_damaging(0.905) TCGA-LN-A4A9-01 17 1800569 1800569 G A RPA1 3'UTR 0.56 TCGA-LN-A4A9-01 17 33318128 33318128 G A LIG3 Missense_Mutation p.E346K 0.26 deleterious(0.03) possibly_damaging(0.9) TCGA-LN-A4A9-01 17 33905081 33905081 C G PEX12 5'UTR 0.49 TCGA-LN-A4A9-01 17 34916662 34916662 A T GGNBP2 Nonsense_Mutation p.K160* 0.74 TCGA-LN-A4A9-01 17 34916664 34916664 G T GGNBP2 Missense_Mutation p.K160N 0.74 deleterious(0.04) benign(0.028) TCGA-LN-A4A9-01 17 36633860 36633860 C T ARHGAP23 Missense_Mutation p.A720V 0.43 tolerated(0.33) possibly_damaging(0.622) TCGA-LN-A4A9-01 17 4068170 4068170 G C ANKFY1 3'Flank 0.24 TCGA-LN-A4A9-01 17 4069759 4069759 G C ANKFY1 3'UTR 0.38 TCGA-LN-A4A9-01 17 4070194 4070194 G C ANKFY1 3'UTR 0.24 TCGA-LN-A4A9-01 17 48941282 48941282 C G TOB1 Missense_Mutation p.E33Q 0.26 deleterious(0.04) possibly_damaging(0.795) TCGA-LN-A4A9-01 17 5289551 5289551 T C NUP88 Missense_Mutation p.D734G 0.35 deleterious(0.02) possibly_damaging(0.595) TCGA-LN-A4A9-01 17 61994789 61994789 G A GH1 Silent p.N178N 0.80 TCGA-LN-A4A9-01 17 62225034 62225055 AATGGTCAAACAATTTAAGTCA - TEX2 3'UTR 0.57 TCGA-LN-A4A9-01 17 65072242 65072242 C T HELZ 3'UTR 0.16 TCGA-LN-A4A9-01 17 71334666 71334666 G C SDK2 3'UTR 0.25 TCGA-LN-A4A9-01 17 73915772 73915772 C A FBF1 Missense_Mutation p.M690I 0.80 tolerated(0.14) benign(0.022) TCGA-LN-A4A9-01 17 74077223 74077223 C A EXOC7 3'Flank 0.74 TCGA-LN-A4A9-01 17 7578528 7578528 A T TP53 Missense_Mutation p.F134L 0.72 deleterious(0) probably_damaging(1) TCGA-LN-A4A9-01 17 76496578 76496578 G A DNAH17-AS1 3'UTR 0.33 TCGA-LN-A4A9-01 17 80789643 80789643 C - ZNF750 Frame_Shift_Del p.A230Pfs*136 0.50 TCGA-LN-A4A9-01 18 43427740 43427740 T C EPG5 3'UTR 0.45 TCGA-LN-A4A9-01 18 9550118 9550118 C G PPP4R1 Missense_Mutation p.E827Q 0.28 deleterious(0) possibly_damaging(0.558) TCGA-LN-A4A9-01 19 1044587 1044587 G C ABCA7 Missense_Mutation p.Q353H 0.33 tolerated(0.1) benign(0.001) TCGA-LN-A4A9-01 19 11598622 11598622 G A ZNF653 Missense_Mutation p.A219V 0.37 tolerated(0.37) benign(0.002) TCGA-LN-A4A9-01 19 11598670 11598670 G A ZNF653 Missense_Mutation p.S203F 0.26 deleterious(0) possibly_damaging(0.541) TCGA-LN-A4A9-01 19 12256319 12256319 T G ZNF625 Missense_Mutation p.E304D 0.49 deleterious(0.03) probably_damaging(0.953) TCGA-LN-A4A9-01 19 1373090 1373090 C G MUM1 Missense_Mutation p.S670C 0.33 deleterious(0) probably_damaging(0.938) TCGA-LN-A4A9-01 19 14588916 14588916 G A GIPC1 3'UTR 0.44 TCGA-LN-A4A9-01 19 17264866 17264866 A T MYO9B Missense_Mutation p.Y363F 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-LN-A4A9-01 19 18234138 18234138 G A MAST3 Missense_Mutation p.E142K 0.27 deleterious(0.01) possibly_damaging(0.472) TCGA-LN-A4A9-01 19 21365524 21365524 G C ZNF431 Missense_Mutation p.E140Q 0.27 deleterious(0.05) possibly_damaging(0.673) TCGA-LN-A4A9-01 19 21909980 21909980 A G ZNF100 Silent p.C378C 0.31 TCGA-LN-A4A9-01 19 2987362 2987362 C T TLE6 Missense_Mutation p.P184S 0.36 tolerated(0.2) benign(0.174) TCGA-LN-A4A9-01 19 33134334 33134334 C T ANKRD27 Intron 0.37 TCGA-LN-A4A9-01 19 36212661 36212661 C G KMT2B Missense_Mutation p.F804L 0.41 benign(0.017) TCGA-LN-A4A9-01 19 3656454 3656454 G A PIP5K1C Silent p.V190V 0.32 TCGA-LN-A4A9-01 19 39759317 39759317 A G IFNL2 Missense_Mutation p.D4G 0.42 tolerated_low_confidence(0.11) benign(0.001) TCGA-LN-A4A9-01 19 40904703 40904703 G C PRX Missense_Mutation p.R69G 0.38 deleterious(0) benign(0.433) TCGA-LN-A4A9-01 19 41247442 41247442 C T C19orf54 3'UTR 0.42 TCGA-LN-A4A9-01 19 42082640 42082640 C T CEACAM21 Missense_Mutation p.S5L 0.32 deleterious(0.03) probably_damaging(0.98) TCGA-LN-A4A9-01 19 42796614 42796614 C T CIC Silent p.L1057L 0.24 TCGA-LN-A4A9-01 19 45150678 45150678 A T PVR Missense_Mutation p.E88V 0.22 deleterious(0.01) probably_damaging(0.964) TCGA-LN-A4A9-01 19 45213942 45213942 G T CEACAM16 3'UTR 0.60 TCGA-LN-A4A9-01 19 47932511 47932511 T C SLC8A2 3'UTR 0.43 TCGA-LN-A4A9-01 19 48976633 48976633 C T CYTH2 Silent p.L144L 0.28 TCGA-LN-A4A9-01 19 52941164 52941164 A C ZNF534 Missense_Mutation p.S164R 0.33 tolerated(0.08) benign(0.193) TCGA-LN-A4A9-01 19 53576419 53576419 C A ZNF160 Intron 0.20 TCGA-LN-A4A9-01 19 54784380 54784380 G T LILRB2 5'UTR 0.33 TCGA-LN-A4A9-01 19 55501422 55501422 G T NLRP2 Missense_Mutation p.W800L 0.31 tolerated(0.07) benign(0.128) TCGA-LN-A4A9-01 19 56089494 56089494 G T ZNF579 Silent p.L504L 0.20 TCGA-LN-A4A9-01 1 114940051 114940051 G C TRIM33 3'UTR 0.69 TCGA-LN-A4A9-01 1 115260085 115260085 A C CSDE1 3'UTR 0.26 TCGA-LN-A4A9-01 1 151254324 151254324 C T ZNF687 5'Flank 0.25 TCGA-LN-A4A9-01 1 152734527 152734527 C G KPRP 3'UTR 0.39 TCGA-LN-A4A9-01 1 157772422 157772422 G C FCRL1 Missense_Mutation p.Q118E 0.43 deleterious(0.04) possibly_damaging(0.733) TCGA-LN-A4A9-01 1 158746611 158746611 C T OR6N2 Missense_Mutation p.R272Q 0.27 tolerated(0.08) benign(0.133) TCGA-LN-A4A9-01 1 159772228 159772228 C T FCRL6 Missense_Mutation p.T5M 0.36 tolerated_low_confidence(0.27) benign(0.004) TCGA-LN-A4A9-01 1 160093831 160093831 G A ATP1A2 Silent p.K160K 0.44 TCGA-LN-A4A9-01 1 161133747 161133747 T G USP21 Missense_Mutation p.C398W 0.40 tolerated(1) probably_damaging(0.979) TCGA-LN-A4A9-01 1 166888577 166888577 G T ILDR2 3'UTR 0.24 TCGA-LN-A4A9-01 1 166888578 166888578 A T ILDR2 3'UTR 0.24 TCGA-LN-A4A9-01 1 173616057 173616057 G T ANKRD45 Silent p.R142R 0.29 TCGA-LN-A4A9-01 1 179304721 179304721 A G SOAT1 Silent p.S86S 0.42 TCGA-LN-A4A9-01 1 182517507 182517507 G A RGSL1 Missense_Mutation p.E909K 0.35 tolerated(0.11) benign(0.059) TCGA-LN-A4A9-01 1 207102208 207102208 G T PIGR 3'UTR 0.36 TCGA-LN-A4A9-01 1 220154793 220154793 T C EPRS Missense_Mutation p.Y1127C 0.26 deleterious(0) probably_damaging(0.977) TCGA-LN-A4A9-01 1 226576388 226576388 T A PARP1 Missense_Mutation p.D229V 0.41 tolerated(0.11) benign(0.027) TCGA-LN-A4A9-01 1 228487030 228487030 A C OBSCN Missense_Mutation p.Q4427H 0.31 benign(0.034) TCGA-LN-A4A9-01 1 229771466 229771466 A G URB2 Missense_Mutation p.N369S 0.46 tolerated(1) benign(0.001) TCGA-LN-A4A9-01 1 232943711 232943711 C A MAP10 Missense_Mutation p.S981Y 0.24 deleterious(0.02) possibly_damaging(0.907) TCGA-LN-A4A9-01 1 248512820 248512820 C T OR14C36 Silent p.V248V 0.29 TCGA-LN-A4A9-01 1 26228032 26228032 C T STMN1 Missense_Mutation p.E110K 0.45 deleterious(0.01) probably_damaging(0.925) TCGA-LN-A4A9-01 1 27687484 27687484 G T MAP3K6 Silent p.I616I 0.44 TCGA-LN-A4A9-01 1 40027358 40027358 G A PABPC4 Intron 0.19 TCGA-LN-A4A9-01 1 41481743 41481743 G C SLFNL1 3'UTR 0.10 TCGA-LN-A4A9-01 1 43804213 43804213 G A MPL Silent p.R71R 0.13 TCGA-LN-A4A9-01 1 43902856 43902856 G A SZT2 Missense_Mutation p.E1960K 0.17 deleterious(0.04) probably_damaging(0.996) TCGA-LN-A4A9-01 1 47098595 47098595 C A ATPAF1 3'UTR 0.33 TCGA-LN-A4A9-01 1 47904390 47904390 C T FOXD2 Missense_Mutation p.P195S 0.23 deleterious(0.01) probably_damaging(0.988) TCGA-LN-A4A9-01 1 49227056 49227056 C A BEND5 Nonsense_Mutation p.E105* 0.22 TCGA-LN-A4A9-01 1 57378148 57378148 C A C8A Missense_Mutation p.R485S 0.24 deleterious(0) benign(0.296) TCGA-LN-A4A9-01 1 59004831 59004831 T C OMA1 Missense_Mutation p.I46V 0.21 tolerated_low_confidence(1) benign(0.003) TCGA-LN-A4A9-01 1 59247677 59247677 C G JUN 3'UTR 0.09 TCGA-LN-A4A9-01 1 62253574 62253574 C T INADL Missense_Mutation p.S333L 0.08 tolerated(0.07) benign(0.011) TCGA-LN-A4A9-01 1 68895504 68895504 C G RPE65 Missense_Mutation p.E519D 0.17 tolerated(0.21) benign(0) TCGA-LN-A4A9-01 20 10030832 10030832 G C ANKEF1 Missense_Mutation p.D539H 0.14 deleterious(0.02) possibly_damaging(0.872) TCGA-LN-A4A9-01 20 24524206 24524206 A G SYNDIG1 Missense_Mutation p.E158G 0.21 deleterious(0.05) possibly_damaging(0.804) TCGA-LN-A4A9-01 20 30037842 30037842 A G DEFB123 Silent p.Q23Q 0.29 TCGA-LN-A4A9-01 20 32341071 32341071 C T ZNF341 Nonsense_Mutation p.Q195* 0.17 TCGA-LN-A4A9-01 20 62194954 62194954 G A HELZ2 Silent p.L1741L 0.45 TCGA-LN-A4A9-01 21 27462296 27462296 C A APP Missense_Mutation p.K106N 0.72 deleterious(0.02) unknown(0) TCGA-LN-A4A9-01 21 35468056 35468056 C G SLC5A3 Missense_Mutation p.L187V 0.36 tolerated(0.23) benign(0.192) TCGA-LN-A4A9-01 21 38887441 38887441 G T DYRK1A 3'Flank 0.27 TCGA-LN-A4A9-01 21 40978250 40978250 C G C21orf88 Intron 0.21 TCGA-LN-A4A9-01 21 46646029 46646029 G T ADARB1 3'UTR 0.88 TCGA-LN-A4A9-01 22 22345724 22345724 C G PRAMENP RNA 0.27 TCGA-LN-A4A9-01 22 24300541 24300541 C A GSTT2B Silent p.G152G 0.43 TCGA-LN-A4A9-01 22 24807589 24807589 A G SPECC1L Missense_Mutation p.N1041D 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-LN-A4A9-01 22 26298604 26298604 C A MYO18B Silent p.A1616A 0.29 TCGA-LN-A4A9-01 22 26773696 26773696 G C SEZ6L Missense_Mutation p.Q1000H 0.12 tolerated(0.23) probably_damaging(0.998) TCGA-LN-A4A9-01 22 41980059 41980059 T C PMM1 Silent p.G126G 0.23 TCGA-LN-A4A9-01 22 42180391 42180391 A T MEI1 Missense_Mutation p.S1046C 0.43 tolerated(0.08) probably_damaging(0.964) TCGA-LN-A4A9-01 22 42609304 42609304 C A TCF20 Missense_Mutation p.D670Y 0.31 probably_damaging(0.959) TCGA-LN-A4A9-01 22 47022732 47022732 T C GRAMD4 Silent p.G12G 0.31 TCGA-LN-A4A9-01 22 47072525 47072525 C G GRAMD4 Nonsense_Mutation p.S531* 0.16 TCGA-LN-A4A9-01 22 50280941 50280941 C G ZBED4 3'UTR 0.14 TCGA-LN-A4A9-01 2 113286627 113286627 G A TTL 3'UTR 0.15 TCGA-LN-A4A9-01 2 114399798 114399798 C T RABL2A 3'UTR 0.31 TCGA-LN-A4A9-01 2 120925515 120925515 A G EPB41L5 Silent p.G689G 0.35 TCGA-LN-A4A9-01 2 128471464 128471464 C T WDR33 Missense_Mutation p.D1001N 0.38 tolerated_low_confidence(0.12) probably_damaging(0.956) TCGA-LN-A4A9-01 2 135712333 135712333 A G CCNT2 3'UTR 0.43 TCGA-LN-A4A9-01 2 141128844 141128844 A G LRP1B Silent p.T3593T 0.34 TCGA-LN-A4A9-01 2 164466828 164466828 G T FIGN Missense_Mutation p.P505Q 0.38 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A9-01 2 187523819 187523819 C T ITGAV Missense_Mutation p.R592W 0.71 deleterious(0.02) benign(0.009) TCGA-LN-A4A9-01 2 197664240 197664240 C T GTF3C3 Silent p.E32E 0.30 TCGA-LN-A4A9-01 2 201457904 201457904 G C AOX1 Silent p.L27L 0.39 TCGA-LN-A4A9-01 2 219695486 219695486 G A PRKAG3 Missense_Mutation p.P71L 0.70 tolerated_low_confidence(0.31) benign(0.002) TCGA-LN-A4A9-01 2 242662655 242662655 G T ING5 Missense_Mutation p.V217L 0.77 deleterious(0.03) probably_damaging(0.999) TCGA-LN-A4A9-01 2 25972870 25972870 C G ASXL2 Missense_Mutation p.E519Q 0.32 tolerated(0.21) benign(0.022) TCGA-LN-A4A9-01 2 27324150 27324150 C A CGREF1 Nonsense_Mutation p.E317* 0.24 TCGA-LN-A4A9-01 2 56145020 56145020 G A EFEMP1 Silent p.T99T 0.30 TCGA-LN-A4A9-01 2 73491122 73491122 C G FBXO41 Missense_Mutation p.L622F 0.42 deleterious(0) probably_damaging(0.996) TCGA-LN-A4A9-01 2 99858936 99858936 G T LYG2 Nonsense_Mutation p.S177* 0.53 TCGA-LN-A4A9-01 3 101284019 101284019 T C TRMT10C Missense_Mutation p.Y132H 0.30 deleterious(0) probably_damaging(0.98) TCGA-LN-A4A9-01 3 110852704 110852704 G A PVRL3 Missense_Mutation p.R431K 0.33 tolerated(0.12) benign(0.008) TCGA-LN-A4A9-01 3 119347680 119347680 G A PLA1A Silent p.K418K 0.34 TCGA-LN-A4A9-01 3 119426309 119426309 C G MAATS1 Missense_Mutation p.S87C 0.17 deleterious(0.03) benign(0.099) TCGA-LN-A4A9-01 3 120840538 120840538 G C STXBP5L Missense_Mutation p.R219T 0.18 tolerated(0.4) possibly_damaging(0.515) TCGA-LN-A4A9-01 3 121356020 121356020 C T HCLS1 Missense_Mutation p.E180K 0.42 tolerated(0.66) unknown(0) TCGA-LN-A4A9-01 3 124459038 124459038 A G UMPS Missense_Mutation p.R384G 0.27 tolerated(0.21) benign(0.016) TCGA-LN-A4A9-01 3 129034552 129034552 G C H1FX Missense_Mutation p.S65W 0.16 deleterious(0.01) probably_damaging(1) TCGA-LN-A4A9-01 3 130098549 130098549 A C COL6A5 Missense_Mutation p.D319A 0.17 tolerated(0.14) benign(0.01) TCGA-LN-A4A9-01 3 131102105 131102105 C A NUDT16 3'UTR 0.28 TCGA-LN-A4A9-01 3 137822805 137822805 G C DZIP1L Silent p.S3S 0.18 TCGA-LN-A4A9-01 3 14220117 14220117 G C LSM3 5'UTR 0.42 TCGA-LN-A4A9-01 3 14746055 14746055 C G C3orf20 Missense_Mutation p.Q364E 0.33 tolerated(0.13) possibly_damaging(0.716) TCGA-LN-A4A9-01 3 160099401 160099401 A G IFT80 Missense_Mutation p.I50T 0.13 deleterious(0.02) benign(0.075) TCGA-LN-A4A9-01 3 167185064 167185064 A C SERPINI2 Missense_Mutation p.F86C 0.30 deleterious(0) probably_damaging(0.989) TCGA-LN-A4A9-01 3 169486006 169486006 T C ACTRT3 Silent p.P111P 0.30 TCGA-LN-A4A9-01 3 172163075 172163076 - T GHSR Frame_Shift_Ins p.M326Nfs*29 0.31 TCGA-LN-A4A9-01 3 182661815 182661815 G C DCUN1D1 3'UTR 0.33 TCGA-LN-A4A9-01 3 182662346 182662346 G A DCUN1D1 3'UTR 0.28 TCGA-LN-A4A9-01 3 182662347 182662347 G T DCUN1D1 3'UTR 0.30 TCGA-LN-A4A9-01 3 182662686 182662686 G A DCUN1D1 3'UTR 0.24 TCGA-LN-A4A9-01 3 184090495 184090495 G A THPO Missense_Mutation p.P290S 0.40 tolerated_low_confidence(0.18) benign(0.018) TCGA-LN-A4A9-01 3 188933129 188933129 G C TPRG1 Missense_Mutation p.E87Q 0.15 tolerated(0.45) benign(0.012) TCGA-LN-A4A9-01 3 195711538 195711538 T C SDHAP1 RNA 0.20 TCGA-LN-A4A9-01 3 23959329 23959329 T C RPL15 Intron 0.36 TCGA-LN-A4A9-01 3 401982 401982 G A CHL1 Missense_Mutation p.G394D 0.05 tolerated(0.17) possibly_damaging(0.628) TCGA-LN-A4A9-01 3 4687130 4687130 T C ITPR1 Silent p.D228D 0.27 TCGA-LN-A4A9-01 3 48711453 48711453 C G NCKIPSD 3'UTR 0.32 TCGA-LN-A4A9-01 3 49133372 49133372 G C QARS 3'UTR 0.24 TCGA-LN-A4A9-01 3 49405948 49405948 C G RHOA Missense_Mutation p.E64Q 0.50 deleterious(0.02) probably_damaging(0.95) TCGA-LN-A4A9-01 3 53264542 53264542 G C TKT Silent p.T354T 0.75 TCGA-LN-A4A9-01 3 97591828 97591828 C T CRYBG3 Missense_Mutation p.S597L 0.21 TCGA-LN-A4A9-01 4 109546356 109546356 G C RPL34 Missense_Mutation p.Q114H 0.19 deleterious(0.02) benign(0.007) TCGA-LN-A4A9-01 4 115997552 115997552 G A NDST4 Missense_Mutation p.P214L 0.19 tolerated(0.29) possibly_damaging(0.464) TCGA-LN-A4A9-01 4 140309613 140309613 A G NAA15 3'UTR 0.41 TCGA-LN-A4A9-01 4 149001812 149001812 A C NR3C2 3'UTR 0.11 TCGA-LN-A4A9-01 4 15069672 15069672 G C CPEB2 3'UTR 0.42 TCGA-LN-A4A9-01 4 153691031 153691032 - A TIGD4 Frame_Shift_Ins p.E376* 0.22 TCGA-LN-A4A9-01 4 1732903 1732903 G C TACC3 Missense_Mutation p.R489T 0.29 tolerated(0.55) benign(0.001) TCGA-LN-A4A9-01 4 1732910 1732910 G A TACC3 Silent p.L491L 0.27 TCGA-LN-A4A9-01 4 1733001 1733001 G C TACC3 Missense_Mutation p.E522Q 0.28 tolerated(0.05) possibly_damaging(0.758) TCGA-LN-A4A9-01 4 187524844 187524844 G C FAT1 Silent p.L3612L 0.31 TCGA-LN-A4A9-01 4 36130237 36130237 C G ARAP2 Silent p.T1186T 0.52 TCGA-LN-A4A9-01 4 37448096 37448096 T C KIAA1239 Missense_Mutation p.F1496L 0.30 tolerated(1) benign(0.001) TCGA-LN-A4A9-01 4 39465225 39465225 G T LIAS Missense_Mutation p.M131I 0.37 deleterious(0) probably_damaging(0.973) TCGA-LN-A4A9-01 4 55161840 55161840 C G PDGFRA 3'UTR 0.24 TCGA-LN-A4A9-01 4 83345509 83345509 C G HNRNPDL 3'UTR 0.29 TCGA-LN-A4A9-01 4 8602970 8602970 T G CPZ Missense_Mutation p.L81R 0.38 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A9-01 4 90874609 90874609 A T MMRN1 3'UTR 0.35 TCGA-LN-A4A9-01 5 113740169 113740169 G A KCNN2 Missense_Mutation p.R206K 0.54 deleterious(0.01) probably_damaging(0.92) TCGA-LN-A4A9-01 5 120022569 120022569 C A PRR16 3'UTR 0.77 TCGA-LN-A4A9-01 5 137089904 137089904 A C HNRNPA0 5'UTR 0.63 TCGA-LN-A4A9-01 5 137498825 137498825 G C BRD8 Nonsense_Mutation p.S694* 0.36 TCGA-LN-A4A9-01 5 137843798 137843798 G T ETF1 3'UTR 0.40 TCGA-LN-A4A9-01 5 140237666 140237666 C T PCDHA10 Missense_Mutation p.S678L 0.33 tolerated_low_confidence(0.08) benign(0.02) TCGA-LN-A4A9-01 5 140261985 140261985 C G PCDHA13 Missense_Mutation p.F44L 0.33 deleterious_low_confidence(0.02) benign(0.179) TCGA-LN-A4A9-01 5 140774532 140774532 C T PCDHGA8 Missense_Mutation p.R718C 0.09 deleterious_low_confidence(0.03) benign(0.177) TCGA-LN-A4A9-01 5 179070016 179070016 C T C5orf60 Silent p.P179P 0.34 TCGA-LN-A4A9-01 5 31401340 31401340 T G DROSHA 3'UTR 0.86 TCGA-LN-A4A9-01 5 34830933 34830933 C A RAI14 3'Flank 0.21 TCGA-LN-A4A9-01 5 38478402 38478402 C G LIFR 3'UTR 0.60 TCGA-LN-A4A9-01 5 64965526 64965526 G T SGTB 3'UTR 0.36 TCGA-LN-A4A9-01 5 96132929 96132929 G T ERAP1 Missense_Mutation p.F249L 0.43 deleterious(0.02) benign(0.067) TCGA-LN-A4A9-01 6 106999729 106999729 G C AIM1 Missense_Mutation p.W1364S 0.37 deleterious(0) probably_damaging(1) TCGA-LN-A4A9-01 6 10930703 10930703 C A SYCP2L Nonsense_Mutation p.S530* 0.23 TCGA-LN-A4A9-01 6 117113916 117113916 T G GPRC6A Missense_Mutation p.I724L 0.35 tolerated(0.26) benign(0.042) TCGA-LN-A4A9-01 6 150123514 150123514 G C PCMT1 Intron 0.45 TCGA-LN-A4A9-01 6 150209742 150209742 G A RAET1E Silent p.I228I 0.35 TCGA-LN-A4A9-01 6 17292855 17292855 C G RBM24 3'UTR 0.27 TCGA-LN-A4A9-01 6 30679848 30679848 C G MDC1 Missense_Mutation p.G624A 0.36 tolerated(0.1) possibly_damaging(0.549) TCGA-LN-A4A9-01 6 33147584 33147584 T C COL11A2 Splice_Site p.X368_splice 0.27 TCGA-LN-A4A9-01 6 4061664 4061664 T G PRPF4B 3'UTR 0.24 TCGA-LN-A4A9-01 6 46293222 46293222 C T RCAN2 Intron 0.38 TCGA-LN-A4A9-01 6 54173334 54173334 C G TINAG 5'UTR 0.35 TCGA-LN-A4A9-01 6 56472397 56472397 G C DST Intron 0.39 TCGA-LN-A4A9-01 6 69640512 69640512 A T BAI3 Missense_Mutation p.K273N 0.45 tolerated(0.1) benign(0.002) TCGA-LN-A4A9-01 6 73043490 73043490 G T RIMS1 Missense_Mutation p.A1440S 0.39 deleterious(0.02) possibly_damaging(0.873) TCGA-LN-A4A9-01 6 99894129 99894129 G A USP45 Missense_Mutation p.P507S 0.35 tolerated(0.12) benign(0.04) TCGA-LN-A4A9-01 7 100334441 100334441 A C ZAN Missense_Mutation p.Y88S 0.25 probably_damaging(0.996) TCGA-LN-A4A9-01 7 102453968 102453968 G C FBXL13 Missense_Mutation p.Q677E 0.27 tolerated(0.37) benign(0.001) TCGA-LN-A4A9-01 7 105254708 105254708 C T ATXN7L1 Silent p.A691A 0.25 TCGA-LN-A4A9-01 7 124782801 124782801 T G POT1-AS1 RNA 0.40 TCGA-LN-A4A9-01 7 131195718 131195718 G A PODXL Missense_Mutation p.P192L 0.15 deleterious(0) possibly_damaging(0.703) TCGA-LN-A4A9-01 7 139791832 139791832 C G KDM7A Missense_Mutation p.E835Q 0.29 deleterious_low_confidence(0.02) benign(0.104) TCGA-LN-A4A9-01 7 141301071 141301071 T A AGK Silent p.T96T 0.24 TCGA-LN-A4A9-01 7 141952041 141952041 T A PRSS58 Nonstop_Mutation p.*242Cext*18 0.54 TCGA-LN-A4A9-01 7 142162146 142162146 G T TRBV6-6 Silent p.A43A 0.29 TCGA-LN-A4A9-01 7 149462695 149462695 G A ZNF467 Missense_Mutation p.P299L 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A4A9-01 7 155570223 155570223 G C RBM33 3'UTR 0.31 TCGA-LN-A4A9-01 7 23351085 23351085 G A IGF2BP3 3'UTR 0.45 TCGA-LN-A4A9-01 7 42017206 42017206 G C GLI3 Nonsense_Mutation p.S588* 0.27 TCGA-LN-A4A9-01 7 44530051 44530051 C A NUDCD3 Missense_Mutation p.R50L 0.65 deleterious(0) probably_damaging(0.926) TCGA-LN-A4A9-01 7 48391999 48391999 A C ABCA13 Missense_Mutation p.I3535L 0.68 probably_damaging(0.996) TCGA-LN-A4A9-01 7 71251946 71251946 T - CALN1 3'UTR 0.36 TCGA-LN-A4A9-01 7 73588738 73588738 G C EIF4H Missense_Mutation p.D9H 0.24 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-LN-A4A9-01 7 81372751 81372751 G A HGF Silent p.R261R 0.46 TCGA-LN-A4A9-01 7 81372752 81372752 C A HGF Missense_Mutation p.R261L 0.46 deleterious(0) probably_damaging(0.998) TCGA-LN-A4A9-01 7 95039233 95039233 G C PON2 Missense_Mutation p.I225M 0.19 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A9-01 8 110376784 110376784 C A PKHD1L1 Missense_Mutation p.Q28K 0.17 tolerated_low_confidence(1) benign(0) TCGA-LN-A4A9-01 8 116635964 116635964 T C TRPS1 5'UTR 0.24 TCGA-LN-A4A9-01 8 120795769 120795769 T C TAF2 Missense_Mutation p.Y655C 0.24 deleterious(0) probably_damaging(0.993) TCGA-LN-A4A9-01 8 126071704 126071704 C T KIAA0196 Missense_Mutation p.M534I 0.12 deleterious(0.02) benign(0.086) TCGA-LN-A4A9-01 8 139164633 139164633 G A FAM135B Silent p.V695V 0.66 TCGA-LN-A4A9-01 8 142437153 142437153 G T PTP4A3 Missense_Mutation p.V105L 0.61 deleterious(0) possibly_damaging(0.874) TCGA-LN-A4A9-01 8 144680307 144680307 C G TIGD5 Missense_Mutation p.C78W 0.31 deleterious(0) probably_damaging(0.989) TCGA-LN-A4A9-01 8 1513881 1513881 C T DLGAP2 Silent p.T341T 0.40 TCGA-LN-A4A9-01 8 2020437 2020437 C G MYOM2 Missense_Mutation p.S269W 0.45 tolerated(0.13) possibly_damaging(0.622) TCGA-LN-A4A9-01 8 28206685 28206685 G A ZNF395 Missense_Mutation p.H463Y 0.54 deleterious(0) probably_damaging(0.982) TCGA-LN-A4A9-01 8 41806773 41806773 C T KAT6A Silent p.E569E 0.29 TCGA-LN-A4A9-01 8 53084980 53084980 T C ST18 Silent p.E147E 0.36 TCGA-LN-A4A9-01 8 57294613 57294613 A T SDR16C6P RNA 0.22 TCGA-LN-A4A9-01 8 63948274 63948274 A G GGH Silent p.Y55Y 0.55 TCGA-LN-A4A9-01 8 86574539 86574539 G T REXO1L1P Silent p.A396A 0.23 TCGA-LN-A4A9-01 8 89050748 89050748 A - MMP16 3'UTR 0.21 TCGA-LN-A4A9-01 8 94935557 94935557 A G PDP1 Missense_Mutation p.M449V 0.22 tolerated(0.09) benign(0.438) TCGA-LN-A4A9-01 8 95893474 95893474 C G CCNE2 3'UTR 0.36 TCGA-LN-A4A9-01 8 99963089 99963089 G C OSR2 Intron 0.23 TCGA-LN-A4A9-01 9 112705216 112705216 C G PALM2 Missense_Mutation p.H249Q 0.87 tolerated(0.58) benign(0.007) TCGA-LN-A4A9-01 9 115760042 115760042 T C ZNF883 RNA 0.68 TCGA-LN-A4A9-01 9 120475807 120475807 C A TLR4 Missense_Mutation p.F467L 0.80 deleterious(0) probably_damaging(0.999) TCGA-LN-A4A9-01 9 126176775 126176775 C T DENND1A Intron 0.17 TCGA-LN-A4A9-01 9 130478320 130478320 G C PTRH1 5'UTR 0.26 TCGA-LN-A4A9-01 9 130478440 130478440 G A TTC16 Missense_Mutation p.E6K 0.25 tolerated(0.26) benign(0.012) TCGA-LN-A4A9-01 9 130478996 130478996 G C PTRH1 5'UTR 0.23 TCGA-LN-A4A9-01 9 133269907 133269907 C A AL354898.1 5'Flank 0.84 TCGA-LN-A4A9-01 9 136629169 136629169 T C VAV2 3'UTR 0.75 TCGA-LN-A4A9-01 9 139837916 139837916 G A FBXW5 Missense_Mutation p.T79M 0.29 tolerated(0.12) benign(0.011) TCGA-LN-A4A9-01 9 20413721 20413721 C T MLLT3 Missense_Mutation p.D375N 0.66 deleterious(0) benign(0.051) TCGA-LN-A4A9-01 9 35067938 35067938 C T VCP Missense_Mutation p.M84I 0.31 tolerated(0.59) benign(0.006) TCGA-LN-A4A9-01 9 5185534 5185534 C T INSL6 Silent p.L23L 0.27 TCGA-LN-A4A9-01 9 91617467 91617467 C T S1PR3 3'UTR 0.20 TCGA-LN-A4A9-01 9 97222649 97222649 A G HIATL1 3'UTR 0.80 TCGA-LN-A4A9-01 9 97869387 97869387 A T FANCC Silent p.A498A 0.30 TCGA-LN-A4A9-01 X 102611426 102611426 G A WBP5 5'UTR 0.43 TCGA-LN-A4A9-01 X 118979254 118979254 C T UPF3B Missense_Mutation p.E126K 0.52 deleterious(0) possibly_damaging(0.895) TCGA-LN-A4A9-01 X 30260669 30260669 C T MAGEB4 Silent p.I139I 0.35 TCGA-LN-A4A9-01 X 50654013 50654013 C G BMP15 Nonsense_Mutation p.S77* 0.30 TCGA-LN-A4A9-01 X 6995436 6995436 G A HDHD1 Missense_Mutation p.A135V 0.87 deleterious(0) possibly_damaging(0.638) TCGA-LN-A4A9-01 X 69964046 69964046 A G TEX11 Missense_Mutation p.M254T 0.75 tolerated(0.1) benign(0.018) TCGA-LN-A4A9-01 X 84347377 84347377 G C SATL1 3'UTR 0.62 TCGA-LN-A4MQ-01 10 50339714 50339714 C T FAM170B Missense_Mutation p.E266K 0.35 tolerated(0.26) benign(0.038) TCGA-LN-A4MQ-01 10 51590217 51590217 C T NCOA4 3'UTR 0.46 TCGA-LN-A4MQ-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.09 TCGA-LN-A4MQ-01 10 89717762 89717762 A T PTEN Nonsense_Mutation p.K263* 0.54 TCGA-LN-A4MQ-01 11 71726383 71726384 - T NUMA1 Frame_Shift_Ins p.R723Afs*16 0.48 TCGA-LN-A4MQ-01 11 89867841 89867847 GCCTCCT - NAALAD2 5'UTR 0.33 TCGA-LN-A4MQ-01 12 123187427 123187427 G A HCAR2 Missense_Mutation p.A135V 0.24 tolerated(0.59) benign(0.005) TCGA-LN-A4MQ-01 12 132407435 132407436 - CA ULK1 3'UTR 0.36 TCGA-LN-A4MQ-01 12 133360544 133360544 C T GOLGA3 Intron 0.15 TCGA-LN-A4MQ-01 12 14518747 14518747 C T ATF7IP 5'UTR 0.10 TCGA-LN-A4MQ-01 12 4921553 4921553 G C KCNA6 3'UTR 0.10 TCGA-LN-A4MQ-01 12 53621213 53621213 G A RARG Silent p.F39F 0.22 TCGA-LN-A4MQ-01 12 56574884 56574884 G A SMARCC2 Missense_Mutation p.P320S 0.23 tolerated(0.22) possibly_damaging(0.641) TCGA-LN-A4MQ-01 13 48955516 48955516 A - RB1 Frame_Shift_Del p.E545Kfs*2 0.45 TCGA-LN-A4MQ-01 13 52649950 52649950 A T NEK5 Missense_Mutation p.F581I 0.25 deleterious(0) probably_damaging(0.999) TCGA-LN-A4MQ-01 14 32561049 32561049 A G ARHGAP5 Missense_Mutation p.I392V 0.29 tolerated(0.19) benign(0.05) TCGA-LN-A4MQ-01 14 66190950 66190950 T A FUT8 Missense_Mutation p.F390I 0.21 deleterious(0) possibly_damaging(0.546) TCGA-LN-A4MQ-01 14 75369084 75369084 C A DLST 3'UTR 0.03 TCGA-LN-A4MQ-01 14 96752289 96752289 T C ATG2B Missense_Mutation p.T2014A 0.55 deleterious(0.04) probably_damaging(0.931) TCGA-LN-A4MQ-01 15 25219597 25219597 A G SNRPN 5'UTR 0.04 TCGA-LN-A4MQ-01 15 62256051 62256051 G A VPS13C Missense_Mutation p.A1105V 0.05 deleterious(0.01) probably_damaging(0.947) TCGA-LN-A4MQ-01 15 62256052 62256052 C A VPS13C Missense_Mutation p.A1105S 0.05 tolerated(0.62) probably_damaging(0.995) TCGA-LN-A4MQ-01 15 68124644 68124644 G T SKOR1 Nonsense_Mutation p.E777* 0.19 TCGA-LN-A4MQ-01 16 2126084 2126084 C T TSC2 Silent p.I885I 0.11 TCGA-LN-A4MQ-01 16 2521982 2521982 C T NTN3 Missense_Mutation p.R94C 0.20 deleterious(0.01) possibly_damaging(0.904) TCGA-LN-A4MQ-01 16 2647916 2647916 A T PDPK1 3'UTR 0.47 TCGA-LN-A4MQ-01 16 31927357 31927357 G A ZNF267 Missense_Mutation p.R596Q 0.39 tolerated(0.3) possibly_damaging(0.756) TCGA-LN-A4MQ-01 17 15134264 15134264 G T PMP22 Silent p.V151V 0.38 TCGA-LN-A4MQ-01 17 47131354 47131354 G T IGF2BP1 3'UTR 0.27 TCGA-LN-A4MQ-01 17 47656098 47656098 C T NXPH3 Silent p.L65L 0.24 TCGA-LN-A4MQ-01 17 71375666 71375666 G C SDK2 Nonsense_Mutation p.Y1595* 0.32 TCGA-LN-A4MQ-01 17 74467981 74467981 C T RHBDF2 Missense_Mutation p.D769N 0.27 deleterious(0.01) probably_damaging(0.954) TCGA-LN-A4MQ-01 17 7577566 7577568 TAC - TP53 In_Frame_Del p.C238_N239delinsY 0.71 TCGA-LN-A4MQ-01 17 7614656 7614656 C A EFNB3 3'UTR 0.26 TCGA-LN-A4MQ-01 17 79974398 79974398 C T ASPSCR1 Missense_Mutation p.P561L 0.31 tolerated(0.07) probably_damaging(0.96) TCGA-LN-A4MQ-01 19 15918306 15918306 A G OR10H1 Missense_Mutation p.V181A 0.07 deleterious(0.04) benign(0.042) TCGA-LN-A4MQ-01 19 19905342 19905342 G A ZNF506 3'UTR 0.12 TCGA-LN-A4MQ-01 19 21366096 21366096 C T ZNF431 Silent p.T330T 0.16 TCGA-LN-A4MQ-01 19 2934253 2934253 G A ZNF77 Missense_Mutation p.T291I 0.40 deleterious(0) possibly_damaging(0.848) TCGA-LN-A4MQ-01 19 3180212 3180212 C T S1PR4 3'UTR 0.15 TCGA-LN-A4MQ-01 19 41071628 41071628 G A SPTBN4 Missense_Mutation p.R2039H 0.05 tolerated(0.07) possibly_damaging(0.823) TCGA-LN-A4MQ-01 19 41248108 41248108 G C C19orf54 3'UTR 0.40 TCGA-LN-A4MQ-01 19 49540113 49540113 G A CTB-60B18.6 5'UTR 0.32 TCGA-LN-A4MQ-01 19 49540114 49540114 C A CTB-60B18.6 5'UTR 0.32 TCGA-LN-A4MQ-01 19 51532406 51532406 G T KLK12 3'Flank 0.11 TCGA-LN-A4MQ-01 19 52195906 52195906 A G SPACA6P-AS RNA 0.24 TCGA-LN-A4MQ-01 19 53086053 53086053 A T ZNF701 Silent p.V313V 0.14 TCGA-LN-A4MQ-01 19 53619598 53619598 A G ZNF415 Missense_Mutation p.M35T 0.15 deleterious(0) benign(0.402) TCGA-LN-A4MQ-01 19 56300637 56300637 C T NLRP11 Missense_Mutation p.C881Y 0.30 deleterious(0) probably_damaging(0.987) TCGA-LN-A4MQ-01 1 144882552 144882552 G A PDE4DIP Missense_Mutation p.S1156F 0.10 tolerated(0.49) possibly_damaging(0.847) TCGA-LN-A4MQ-01 1 202150797 202150797 G A PTPRVP Intron 0.15 TCGA-LN-A4MQ-01 1 222753163 222753163 T C TAF1A Missense_Mutation p.M115V 0.48 tolerated(1) benign(0) TCGA-LN-A4MQ-01 1 237801776 237801776 T C RYR2 Silent p.F2304F 0.24 TCGA-LN-A4MQ-01 1 2441583 2441583 C A PANK4 Missense_Mutation p.C651F 0.36 deleterious(0) possibly_damaging(0.637) TCGA-LN-A4MQ-01 1 43916407 43916407 C T SZT2 3'UTR 0.17 TCGA-LN-A4MQ-01 1 84394840 84394840 G A TTLL7 Missense_Mutation p.A374V 0.29 deleterious(0) possibly_damaging(0.558) TCGA-LN-A4MQ-01 20 3147483 3147483 G A LZTS3 Silent p.T109T 0.30 TCGA-LN-A4MQ-01 20 34797649 34797649 C T EPB41L1 Silent p.F636F 0.42 TCGA-LN-A4MQ-01 20 47364399 47364399 G A PREX1 Missense_Mutation p.R80W 0.11 deleterious(0) probably_damaging(1) TCGA-LN-A4MQ-01 20 48130860 48130860 G A PTGIS Missense_Mutation p.R310C 0.53 deleterious(0.01) possibly_damaging(0.752) TCGA-LN-A4MQ-01 21 40969634 40969634 C T C21orf88 Silent p.L145L 0.11 TCGA-LN-A4MQ-01 21 42830713 42830713 G C MX1 3'UTR 0.39 TCGA-LN-A4MQ-01 21 46021807 46021807 G A KRTAP10-7 3'UTR 0.06 TCGA-LN-A4MQ-01 22 41923659 41923660 - TT POLR3H 3'UTR 0.35 TCGA-LN-A4MQ-01 22 51117786 51117786 A C SHANK3 Missense_Mutation p.Y272S 0.30 probably_damaging(0.997) TCGA-LN-A4MQ-01 2 178098803 178098803 C A NFE2L2 Missense_Mutation p.G81V 0.34 deleterious(0) probably_damaging(1) TCGA-LN-A4MQ-01 2 179588345 179588345 C G TTN Missense_Mutation p.R7161T 0.07 TCGA-LN-A4MQ-01 2 210559468 210559468 A T MAP2 Silent p.V858V 0.09 TCGA-LN-A4MQ-01 2 232458874 232458874 G T C2orf57 3'UTR 0.17 TCGA-LN-A4MQ-01 2 242089045 242089045 G T PPP1R7 5'Flank 0.11 TCGA-LN-A4MQ-01 2 29247111 29247111 G A FAM179A Missense_Mutation p.R575H 0.15 deleterious(0) probably_damaging(0.977) TCGA-LN-A4MQ-01 2 3743889 3743889 C T ALLC Missense_Mutation p.A231V 0.05 tolerated(0.23) benign(0.02) TCGA-LN-A4MQ-01 2 61472421 61472421 T C USP34 Missense_Mutation p.Y2184C 0.30 deleterious(0) probably_damaging(0.992) TCGA-LN-A4MQ-01 2 88047674 88047674 T C PLGLB2 Translation_Start_Site p.M1? 0.29 deleterious(0) probably_damaging(0.996) TCGA-LN-A4MQ-01 2 88405895 88405895 G C SMYD1 Missense_Mutation p.D345H 0.18 deleterious(0) possibly_damaging(0.592) TCGA-LN-A4MQ-01 3 10255058 10255058 G A IRAK2 Silent p.K232K 0.62 TCGA-LN-A4MQ-01 3 11300956 11300956 C A HRH1 Missense_Mutation p.A78D 0.40 deleterious(0) probably_damaging(0.949) TCGA-LN-A4MQ-01 3 126211314 126211314 G A UROC1 Missense_Mutation p.R579C 0.18 deleterious(0) probably_damaging(0.987) TCGA-LN-A4MQ-01 3 12977703 12977703 C A IQSEC1 Silent p.L285L 0.45 TCGA-LN-A4MQ-01 3 172115911 172115911 A T FNDC3B 3'UTR 0.11 TCGA-LN-A4MQ-01 3 189612963 189612963 A G TP63 3'UTR 0.22 TCGA-LN-A4MQ-01 3 49933677 49933677 C G MST1R Missense_Mutation p.S867T 0.28 tolerated(0.21) benign(0.006) TCGA-LN-A4MQ-01 3 57563091 57563092 - CGAT ARF4 Frame_Shift_Ins p.S94Rfs*6 0.38 TCGA-LN-A4MQ-01 4 184931510 184931510 G T STOX2 Missense_Mutation p.G507W 0.41 deleterious(0) probably_damaging(0.999) TCGA-LN-A4MQ-01 4 184932024 184932024 G C STOX2 Missense_Mutation p.G678A 0.50 tolerated_low_confidence(0.19) benign(0.105) TCGA-LN-A4MQ-01 4 47938770 47938770 G A CNGA1 Missense_Mutation p.L650F 0.08 deleterious(0) probably_damaging(1) TCGA-LN-A4MQ-01 5 139622995 139622995 G A CYSTM1 Silent p.%3D 0.45 TCGA-LN-A4MQ-01 5 140604553 140604553 G A PCDHB14 Silent p.P492P 0.07 TCGA-LN-A4MQ-01 5 140745554 140745554 C T PCDHGA5 Silent p.L553L 0.07 TCGA-LN-A4MQ-01 5 37064653 37064653 T A NIPBL Missense_Mutation p.S2692T 0.19 tolerated_low_confidence(0.08) possibly_damaging(0.53) TCGA-LN-A4MQ-01 5 45645478 45645478 T G HCN1 Missense_Mutation p.S220R 0.06 deleterious(0) probably_damaging(0.996) TCGA-LN-A4MQ-01 5 55110775 55110775 T A DDX4 Missense_Mutation p.F588I 0.43 tolerated(0.1) benign(0.063) TCGA-LN-A4MQ-01 6 130535488 130535488 G A SAMD3 Missense_Mutation p.A88V 0.05 tolerated_low_confidence(0.13) benign(0.002) TCGA-LN-A4MQ-01 6 149721559 149721559 A T SUMO4 Missense_Mutation p.K11M 0.26 deleterious(0) possibly_damaging(0.685) TCGA-LN-A4MQ-01 6 167754288 167754288 C T TTLL2 Silent p.S300S 0.05 TCGA-LN-A4MQ-01 6 21065322 21065322 C T CDKAL1 Missense_Mutation p.P367S 0.10 deleterious(0) probably_damaging(0.999) TCGA-LN-A4MQ-01 6 27840931 27840942 GGCCCTGAGAAG - HIST1H4L 3'UTR 0.24 TCGA-LN-A4MQ-01 6 27925771 27925771 T C OR2B6 Silent p.F251F 0.04 TCGA-LN-A4MQ-01 6 30680542 30680542 T C MDC1 Missense_Mutation p.K393E 0.10 deleterious(0.03) benign(0.054) TCGA-LN-A4MQ-01 6 30894115 30894115 A G VARS2 3'UTR 0.10 TCGA-LN-A4MQ-01 6 44394257 44394257 G A CDC5L Silent p.P563P 0.22 TCGA-LN-A4MQ-01 7 138264148 138264148 G A TRIM24 Missense_Mutation p.R819K 0.06 tolerated(0.99) benign(0.304) TCGA-LN-A4MQ-01 7 38794506 38794506 C G VPS41 Missense_Mutation p.D576H 0.28 deleterious(0) possibly_damaging(0.815) TCGA-LN-A4MQ-01 7 5760759 5760759 G A RNF216 Nonsense_Mutation p.R517* 0.31 TCGA-LN-A4MQ-01 7 83589762 83589762 G A SEMA3A 3'UTR 0.44 TCGA-LN-A4MQ-01 7 86468866 86468866 G A GRM3 Missense_Mutation p.R679K 0.31 tolerated(0.31) possibly_damaging(0.498) TCGA-LN-A4MQ-01 7 99097549 99097549 A C ZNF394 Silent p.A56A 0.25 TCGA-LN-A4MQ-01 8 139144969 139144969 C T FAM135B Missense_Mutation p.R1363Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-LN-A4MQ-01 8 24181426 24181426 C T ADAM28 Missense_Mutation p.P267L 0.13 deleterious(0.01) probably_damaging(0.909) TCGA-LN-A4MQ-01 8 48734271 48734271 T C PRKDC Missense_Mutation p.Y3001C 0.41 possibly_damaging(0.666) TCGA-LN-A4MQ-01 8 86357447 86357447 G T CA3 Missense_Mutation p.K169N 0.38 deleterious(0) probably_damaging(0.973) TCGA-LN-A4MQ-01 8 89180161 89180161 C T MMP16 Missense_Mutation p.R149H 0.30 tolerated(0.78) benign(0.006) TCGA-LN-A4MQ-01 9 101542596 101542596 C G ANKS6 Missense_Mutation p.A415P 0.09 deleterious(0) probably_damaging(0.998) TCGA-LN-A4MQ-01 9 135173511 135173511 C G SETX Missense_Mutation p.D1913H 0.16 deleterious(0.01) possibly_damaging(0.859) TCGA-LN-A4MQ-01 9 140508651 140508651 G A ARRDC1 Silent p.V201V 0.70 TCGA-LN-A4MQ-01 X 149898659 149898659 G A MTMR1 Missense_Mutation p.A204T 0.63 deleterious(0.02) possibly_damaging(0.489) TCGA-LN-A4MQ-01 X 19007957 19007957 G A GPR64 3'UTR 0.39 TCGA-LN-A4MQ-01 X 307473 307473 T C PPP2R3B Missense_Mutation p.K252R 0.56 tolerated(0.31) benign(0.016) TCGA-LN-A4MQ-01 X 39911253 39911253 G C BCOR 3'UTR 0.70 TCGA-LN-A4MQ-01 X 50163452 50163452 C A DGKK RNA 0.14 TCGA-LN-A4MR-01 10 1229040 1229040 T C ADARB2 3'UTR 0.28 TCGA-LN-A4MR-01 10 89712008 89712008 G C PTEN Missense_Mutation p.G209A 0.27 tolerated(0.13) benign(0.175) TCGA-LN-A4MR-01 10 98136519 98136519 G T TLL2 Missense_Mutation p.P793H 0.52 deleterious(0) probably_damaging(1) TCGA-LN-A4MR-01 11 103158284 103158284 G C DYNC2H1 Missense_Mutation p.R3689T 0.67 probably_damaging(0.996) TCGA-LN-A4MR-01 11 10820915 10820915 G C EIF4G2 Missense_Mutation p.S794C 0.20 tolerated(0.16) possibly_damaging(0.619) TCGA-LN-A4MR-01 11 117158124 117158124 T C BACE1 3'UTR 0.33 TCGA-LN-A4MR-01 11 27384468 27384468 C T CCDC34 Missense_Mutation p.D92N 0.29 tolerated(0.09) benign(0.007) TCGA-LN-A4MR-01 11 30034490 30034490 C T KCNA4 5'UTR 0.50 TCGA-LN-A4MR-01 11 35275000 35275000 G C SLC1A2 3'UTR 0.20 TCGA-LN-A4MR-01 11 35275135 35275135 G C SLC1A2 3'UTR 0.33 TCGA-LN-A4MR-01 11 46749672 46749672 G A F2 Silent p.E419E 0.37 TCGA-LN-A4MR-01 11 61205246 61205246 C T SDHAF2 Silent p.S62S 0.41 TCGA-LN-A4MR-01 11 65124656 65124656 C T TIGD3 Silent p.Y459Y 0.18 TCGA-LN-A4MR-01 11 66407134 66407134 G C RBM4 5'UTR 0.33 TCGA-LN-A4MR-01 11 66407231 66407231 G C RBM4 Missense_Mutation p.E17Q 0.40 deleterious(0) possibly_damaging(0.692) TCGA-LN-A4MR-01 11 70049577 70049577 C G FADD Missense_Mutation p.F4L 0.05 deleterious(0) benign(0.432) TCGA-LN-A4MR-01 11 70049640 70049640 C T FADD Silent p.F25F 0.07 TCGA-LN-A4MR-01 11 70049700 70049700 C G FADD Silent p.L45L 0.05 TCGA-LN-A4MR-01 11 93141459 93141459 G A CCDC67 Silent p.E463E 0.39 TCGA-LN-A4MR-01 12 100603884 100603884 A G ACTR6 Missense_Mutation p.D138G 0.15 tolerated(0.09) benign(0.005) TCGA-LN-A4MR-01 12 101295550 101295550 G A ANO4 5'UTR 0.39 TCGA-LN-A4MR-01 12 123286164 123286164 G T CCDC62 Nonsense_Mutation p.E491* 0.20 TCGA-LN-A4MR-01 12 133351637 133351637 G T GOLGA3 Intron 0.50 TCGA-LN-A4MR-01 12 14659951 14659951 A C PLBD1 Missense_Mutation p.L430V 0.15 deleterious(0.01) possibly_damaging(0.648) TCGA-LN-A4MR-01 12 15739974 15739974 C T PTPRO Silent p.I1133I 0.23 TCGA-LN-A4MR-01 12 26383707 26383707 G - SSPN Frame_Shift_Del p.A144Pfs*38 0.19 TCGA-LN-A4MR-01 12 7046294 7046294 G C ATN1 Missense_Mutation p.A622P 0.59 probably_damaging(0.995) TCGA-LN-A4MR-01 13 19997096 19997096 T C TPTE2 3'UTR 0.35 TCGA-LN-A4MR-01 13 23914586 23914586 T A SACS Missense_Mutation p.Q1143H 0.32 benign(0.002) TCGA-LN-A4MR-01 13 25058793 25058793 G A PARP4 Silent p.L482L 0.26 TCGA-LN-A4MR-01 13 26788056 26788056 G C RNF6 Missense_Mutation p.H655D 0.60 deleterious(0) possibly_damaging(0.876) TCGA-LN-A4MR-01 13 46124142 46124142 G A FAM194B Missense_Mutation p.A511V 0.51 tolerated(0.24) benign(0.004) TCGA-LN-A4MR-01 13 51594715 51594715 G T GUCY1B2 RNA 0.54 TCGA-LN-A4MR-01 14 101347784 101347784 C A RTL1 Silent p.R1114R 0.21 TCGA-LN-A4MR-01 14 103371584 103371584 G C TRAF3 Missense_Mutation p.Q390H 0.44 tolerated(0.12) benign(0.058) TCGA-LN-A4MR-01 14 24909952 24909952 A G SDR39U1 Intron 0.30 TCGA-LN-A4MR-01 14 45515859 45515859 A G FAM179B Intron 0.35 TCGA-LN-A4MR-01 14 51224041 51224041 T A NIN Missense_Mutation p.K1236M 0.32 deleterious(0) probably_damaging(0.937) TCGA-LN-A4MR-01 14 52782053 52782053 C G PTGER2 Missense_Mutation p.L263V 0.23 deleterious(0) probably_damaging(0.986) TCGA-LN-A4MR-01 14 56120290 56120290 C T KTN1 Missense_Mutation p.S926L 0.29 tolerated(0.08) benign(0.012) TCGA-LN-A4MR-01 14 59834304 59834304 G A DAAM1 Missense_Mutation p.R1005H 0.39 tolerated(0.08) possibly_damaging(0.475) TCGA-LN-A4MR-01 14 64588838 64588838 G A SYNE2 Missense_Mutation p.E4423K 0.30 benign(0.009) TCGA-LN-A4MR-01 14 74959998 74959998 G A NPC2 5'UTR 0.19 TCGA-LN-A4MR-01 14 91341668 91341668 G C RPS6KA5 Missense_Mutation p.H625D 0.34 tolerated(0.62) benign(0.002) TCGA-LN-A4MR-01 14 91691249 91691249 C G C14orf159 3'UTR 0.33 TCGA-LN-A4MR-01 14 96909064 96909064 C T AK7 Intron 0.23 TCGA-LN-A4MR-01 14 99635886 99635886 T C BCL11B 3'UTR 0.29 TCGA-LN-A4MR-01 15 102299764 102299764 G A DNM1P47 RNA 0.22 TCGA-LN-A4MR-01 15 21071350 21071350 G A POTEB2 Silent p.D87D 0.14 TCGA-LN-A4MR-01 15 23931422 23931422 G A NDN Missense_Mutation p.R315C 0.24 tolerated_low_confidence(0.11) benign(0.014) TCGA-LN-A4MR-01 15 33096524 33096524 T A FMN1 Missense_Mutation p.E1090V 0.17 deleterious(0) probably_damaging(0.982) TCGA-LN-A4MR-01 15 33096525 33096525 C A FMN1 Nonsense_Mutation p.E1090* 0.18 TCGA-LN-A4MR-01 15 48936865 48936865 C T FBN1 Silent p.V34V 0.44 TCGA-LN-A4MR-01 15 54919647 54919647 G C UNC13C 3'UTR 0.33 TCGA-LN-A4MR-01 15 68987554 68987554 T A CORO2B Missense_Mutation p.F98I 0.30 deleterious(0.01) probably_damaging(1) TCGA-LN-A4MR-01 15 79586906 79586906 C T ANKRD34C Missense_Mutation p.P427L 0.52 deleterious(0) benign(0.22) TCGA-LN-A4MR-01 15 90768989 90768989 G T SEMA4B Missense_Mutation p.D540Y 0.33 deleterious(0) probably_damaging(0.998) TCGA-LN-A4MR-01 16 1261716 1261716 G A CACNA1H Missense_Mutation p.A1493T 0.11 deleterious(0) probably_damaging(0.982) TCGA-LN-A4MR-01 16 14029602 14029602 C A ERCC4 Splice_Site p.X604_splice 0.14 TCGA-LN-A4MR-01 16 22358728 22358728 C T CDR2 Missense_Mutation p.R308H 0.08 deleterious(0.03) probably_damaging(0.995) TCGA-LN-A4MR-01 16 2328323 2328323 C G ABCA3 Missense_Mutation p.E1562Q 0.18 deleterious(0.02) benign(0.212) TCGA-LN-A4MR-01 16 27481557 27481557 G A GTF3C1 Silent p.D1562D 0.30 TCGA-LN-A4MR-01 16 32264978 32264978 C T TP53TG3D Missense_Mutation p.P102S 0.18 tolerated_low_confidence(0.37) possibly_damaging(0.803) TCGA-LN-A4MR-01 16 3593431 3593431 A G NLRC3 Missense_Mutation p.I1024T 0.24 tolerated(0.48) benign(0.006) TCGA-LN-A4MR-01 16 49430446 49430446 G C C16orf78 Missense_Mutation p.Q169H 0.26 deleterious(0) benign(0.001) TCGA-LN-A4MR-01 16 57513551 57513551 C G DOK4 5'UTR 0.28 TCGA-LN-A4MR-01 16 70841857 70841857 C T HYDIN Missense_Mutation p.E4998K 0.47 possibly_damaging(0.801) TCGA-LN-A4MR-01 17 18133339 18133339 G A LLGL1 Missense_Mutation p.G56R 0.65 deleterious(0) probably_damaging(1) TCGA-LN-A4MR-01 17 30807535 30807535 G C PSMD11 Silent p.L385L 0.22 TCGA-LN-A4MR-01 17 30817495 30817495 C T CDK5R1 3'UTR 0.25 TCGA-LN-A4MR-01 17 33348699 33348699 T C RFFL Silent p.T94T 0.38 TCGA-LN-A4MR-01 17 34893992 34893992 A G PIGW Missense_Mutation p.I348V 0.23 tolerated(0.73) benign(0.009) TCGA-LN-A4MR-01 17 37566025 37566025 G A MED1 Nonsense_Mutation p.Q817* 0.22 TCGA-LN-A4MR-01 17 3981250 3981250 T C ZZEF1 Silent p.L972L 0.27 TCGA-LN-A4MR-01 17 41006530 41006530 G C AOC3 Missense_Mutation p.E556Q 0.39 tolerated(0.2) benign(0.001) TCGA-LN-A4MR-01 17 58153567 58153567 C A HEATR6 Missense_Mutation p.R84L 0.56 tolerated(0.14) benign(0.089) TCGA-LN-A4MR-01 17 67193205 67193205 C T ABCA10 Missense_Mutation p.G412S 0.28 deleterious(0.01) possibly_damaging(0.799) TCGA-LN-A4MR-01 17 7221920 7221920 G A NEURL4 Missense_Mutation p.S1253F 0.44 deleterious(0.02) benign(0.054) TCGA-LN-A4MR-01 17 73611891 73611891 T C MYO15B 3'Flank 0.07 TCGA-LN-A4MR-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.56 tolerated(0.11) benign(0.308) TCGA-LN-A4MR-01 17 78411315 78411315 G C ENDOV 3'UTR 0.43 TCGA-LN-A4MR-01 17 79782177 79782177 C T FAM195B Missense_Mutation p.R38H 0.11 tolerated(0.07) benign(0.07) TCGA-LN-A4MR-01 19 12203239 12203239 C G ZNF788 5'UTR 0.27 TCGA-LN-A4MR-01 19 12541042 12541042 T C ZNF443 Silent p.P648P 0.11 TCGA-LN-A4MR-01 19 12721606 12721606 C G ZNF490 5'UTR 0.31 TCGA-LN-A4MR-01 19 15367010 15367010 T C BRD4 Missense_Mutation p.K539R 0.37 benign(0.292) TCGA-LN-A4MR-01 19 16884031 16884031 G A NWD1 Silent p.Q835Q 0.49 TCGA-LN-A4MR-01 19 18672827 18672827 C T KXD1 Intron 0.21 TCGA-LN-A4MR-01 19 19766338 19766338 T C ATP13A1 Silent p.E465E 0.26 TCGA-LN-A4MR-01 19 21712490 21712490 G A ZNF429 Missense_Mutation p.E12K 0.33 deleterious(0.03) possibly_damaging(0.615) TCGA-LN-A4MR-01 19 22157331 22157331 C A ZNF208 Nonsense_Mutation p.G169* 0.20 TCGA-LN-A4MR-01 19 35828840 35828840 A G CD22 Missense_Mutation p.K301E 0.11 tolerated(0.08) possibly_damaging(0.526) TCGA-LN-A4MR-01 19 36243179 36243179 G A LIN37 Intron 0.27 TCGA-LN-A4MR-01 19 39322494 39322494 G C ECH1 5'UTR 0.58 TCGA-LN-A4MR-01 19 40947559 40947559 C T SERTAD3 Silent p.G143G 0.38 TCGA-LN-A4MR-01 19 41206003 41206003 G T ADCK4 Missense_Mutation p.A371D 0.18 deleterious(0) possibly_damaging(0.889) TCGA-LN-A4MR-01 19 41515957 41515957 C T CYP2B6 Missense_Mutation p.S294L 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-LN-A4MR-01 19 43579505 43579505 C A PSG2 Splice_Site p.X237_splice 0.19 TCGA-LN-A4MR-01 19 44112223 44112223 G A ZNF428 Missense_Mutation p.S38L 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.504) TCGA-LN-A4MR-01 19 45411884 45411884 C A APOE Missense_Mutation p.L111M 0.14 deleterious(0.04) possibly_damaging(0.729) TCGA-LN-A4MR-01 19 45684142 45684142 G A BLOC1S3 3'UTR 0.31 TCGA-LN-A4MR-01 19 46664041 46664041 G C IGFL2 Missense_Mutation p.D93H 0.35 deleterious(0) possibly_damaging(0.694) TCGA-LN-A4MR-01 19 52032987 52032987 A G SIGLEC6 Missense_Mutation p.F335L 0.37 tolerated(0.29) benign(0.013) TCGA-LN-A4MR-01 19 52468501 52468501 T C ZNF350 Missense_Mutation p.Y402C 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-LN-A4MR-01 19 56895658 56895658 A T ZNF582 Missense_Mutation p.F376L 0.45 deleterious(0) probably_damaging(0.993) TCGA-LN-A4MR-01 19 577776 577776 G A BSG Missense_Mutation p.G24S 0.25 deleterious(0.03) probably_damaging(0.994) TCGA-LN-A4MR-01 19 57985077 57985077 A T ZNF772 Silent p.T345T 0.41 TCGA-LN-A4MR-01 19 6380476 6380476 T G GTF2F1 Missense_Mutation p.D457A 0.42 deleterious(0.01) benign(0.11) TCGA-LN-A4MR-01 19 6697514 6697514 C T C3 Silent p.K879K 0.36 TCGA-LN-A4MR-01 19 811811 811811 G C PTBP1 3'UTR 0.33 TCGA-LN-A4MR-01 19 9204692 9204692 G A OR1M1 Missense_Mutation p.V258I 0.17 deleterious(0.03) probably_damaging(0.997) TCGA-LN-A4MR-01 1 104087666 104087666 A C RNPC3 Missense_Mutation p.E383D 0.20 tolerated(0.58) benign(0.002) TCGA-LN-A4MR-01 1 109472947 109472947 G A GPSM2 3'UTR 0.20 TCGA-LN-A4MR-01 1 145811926 145811927 - A GPR89A Frame_Shift_Ins p.G95Wfs*13 0.16 TCGA-LN-A4MR-01 1 151491113 151491113 C T CGN Nonsense_Mutation p.R40* 0.13 TCGA-LN-A4MR-01 1 1601102 1601102 C - SLC35E2B Splice_Site p.X278_splice 0.20 TCGA-LN-A4MR-01 1 176564460 176564460 A C PAPPA2 Missense_Mutation p.N574H 0.27 tolerated(0.06) benign(0.349) TCGA-LN-A4MR-01 1 186106700 186106700 G C HMCN1 Missense_Mutation p.K4551N 0.08 possibly_damaging(0.76) TCGA-LN-A4MR-01 1 19493660 19493660 C T UBR4 Missense_Mutation p.S1322N 0.36 possibly_damaging(0.852) TCGA-LN-A4MR-01 1 202858168 202858168 G A RABIF Missense_Mutation p.A20V 0.40 tolerated(0.43) benign(0.213) TCGA-LN-A4MR-01 1 22974181 22974181 G A C1QC Missense_Mutation p.E215K 0.30 deleterious(0.01) benign(0.428) TCGA-LN-A4MR-01 1 231472549 231472549 C T EXOC8 Missense_Mutation p.D315N 0.25 tolerated(0.14) benign(0.002) TCGA-LN-A4MR-01 1 235922855 235922855 T C LYST Missense_Mutation p.M2100V 0.21 tolerated_low_confidence(0.53) benign(0.003) TCGA-LN-A4MR-01 1 237863703 237863703 G A RYR2 Silent p.L3101L 0.21 TCGA-LN-A4MR-01 1 248402808 248402808 C A OR2M4 Missense_Mutation p.S193Y 0.28 deleterious(0.02) possibly_damaging(0.781) TCGA-LN-A4MR-01 1 27278224 27278224 G C C1orf172 Nonsense_Mutation p.Y216* 0.16 TCGA-LN-A4MR-01 1 40092514 40092514 G A HEYL Nonsense_Mutation p.R218* 0.43 TCGA-LN-A4MR-01 1 44072574 44072574 G A PTPRF Silent p.V1264V 0.16 TCGA-LN-A4MR-01 1 45228229 45228229 G C KIF2C Missense_Mutation p.E624Q 0.23 tolerated(0.05) benign(0.017) TCGA-LN-A4MR-01 1 46035627 46035627 G A AKR1A1 Silent p.%3D 0.26 TCGA-LN-A4MR-01 1 46476523 46476523 G A MAST2 Missense_Mutation p.R367Q 0.24 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-LN-A4MR-01 1 53972230 53972230 G A GLIS1 3'UTR 0.16 TCGA-LN-A4MR-01 1 6202187 6202187 C T CHD5 Splice_Site p.X812_splice 0.48 TCGA-LN-A4MR-01 1 66075661 66075661 C T LEPR Missense_Mutation p.S595F 0.49 tolerated(0.09) benign(0.045) TCGA-LN-A4MR-01 1 67147594 67147594 C A SGIP1 Missense_Mutation p.P286Q 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-LN-A4MR-01 1 8928111 8928111 C T ENO1 Silent p.L82L 0.16 TCGA-LN-A4MR-01 1 908636 908636 G A PLEKHN1 Missense_Mutation p.R408Q 0.21 tolerated(0.1) benign(0.041) TCGA-LN-A4MR-01 20 33515022 33515022 G A ACSS2 3'UTR 0.11 TCGA-LN-A4MR-01 20 41419957 41419957 C T PTPRT Missense_Mutation p.V122I 0.08 tolerated(0.32) benign(0.297) TCGA-LN-A4MR-01 20 43135470 43135470 G A SERINC3 Nonsense_Mutation p.Q261* 0.35 TCGA-LN-A4MR-01 20 61150778 61150778 C T C20orf166 5'UTR 0.19 TCGA-LN-A4MR-01 20 62592679 62592679 G T ZNF512B Missense_Mutation p.L804M 0.26 tolerated(0.22) probably_damaging(0.993) TCGA-LN-A4MR-01 21 10942941 10942941 C T TPTE Missense_Mutation p.E216K 0.09 deleterious(0.04) possibly_damaging(0.474) TCGA-LN-A4MR-01 21 18938008 18938008 T C CXADR Nonstop_Mutation p.*366Qext*19 0.30 TCGA-LN-A4MR-01 21 34638156 34638156 T C AP000295.9 Intron 0.24 TCGA-LN-A4MR-01 21 47970533 47970533 C T DIP2A Silent p.L905L 0.29 TCGA-LN-A4MR-01 22 35734728 35734728 G T TOM1 Missense_Mutation p.A391S 0.18 deleterious(0.05) possibly_damaging(0.61) TCGA-LN-A4MR-01 22 40661412 40661412 G A TNRC6B Missense_Mutation p.G393E 0.19 tolerated(0.45) probably_damaging(1) TCGA-LN-A4MR-01 22 45583196 45583196 C T NUP50 3'UTR 0.17 TCGA-LN-A4MR-01 2 113593181 113593181 C T IL1B Missense_Mutation p.D21N 0.49 deleterious(0.04) benign(0.16) TCGA-LN-A4MR-01 2 113593774 113593774 C T IL1B Missense_Mutation p.M11I 0.43 tolerated(0.17) benign(0.055) TCGA-LN-A4MR-01 2 128350402 128350402 C T MYO7B Nonsense_Mutation p.R676* 0.25 TCGA-LN-A4MR-01 2 136872988 136872988 G A CXCR4 Silent p.P174P 0.42 TCGA-LN-A4MR-01 2 158390538 158390538 C T ACVR1C Silent p.G458G 0.25 TCGA-LN-A4MR-01 2 163031461 163031461 C T FAP Missense_Mutation p.V629I 0.14 deleterious(0.03) benign(0.014) TCGA-LN-A4MR-01 2 165559719 165559719 G A COBLL1 Missense_Mutation p.P413S 0.28 tolerated(0.07) benign(0.091) TCGA-LN-A4MR-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.23 deleterious(0) probably_damaging(1) TCGA-LN-A4MR-01 2 179486627 179486627 C T TTN Missense_Mutation p.E15008K 0.36 TCGA-LN-A4MR-01 2 191161574 191161574 G A HIBCH Missense_Mutation p.L62F 0.20 tolerated(0.09) benign(0.056) TCGA-LN-A4MR-01 2 197010768 197010768 C T STK17B Missense_Mutation p.G116E 0.32 deleterious(0) probably_damaging(1) TCGA-LN-A4MR-01 2 197744869 197744869 T C PGAP1 Silent p.T427T 0.58 TCGA-LN-A4MR-01 2 200246514 200246514 G C SATB2 Missense_Mutation p.L126V 0.14 tolerated(1) benign(0.001) TCGA-LN-A4MR-01 2 202149834 202149834 G T CASP8 Missense_Mutation p.Q425H 0.55 tolerated(0.3) benign(0.078) TCGA-LN-A4MR-01 2 202149919 202149919 G C CASP8 Missense_Mutation p.D454H 0.45 deleterious(0) benign(0.332) TCGA-LN-A4MR-01 2 228111451 228111451 C T COL4A3 Silent p.I146I 0.25 TCGA-LN-A4MR-01 2 233752783 233752783 C T NGEF Missense_Mutation p.R436Q 0.25 tolerated(0.06) possibly_damaging(0.795) TCGA-LN-A4MR-01 2 239975285 239975285 C G HDAC4 Missense_Mutation p.R1029P 0.48 tolerated(0.23) benign(0.002) TCGA-LN-A4MR-01 2 42990017 42990017 C T OXER1 3'UTR 0.15 TCGA-LN-A4MR-01 2 48825535 48825535 A C STON1 3'UTR 0.50 TCGA-LN-A4MR-01 2 70890767 70890767 C T ADD2 Silent p.T657T 0.24 TCGA-LN-A4MR-01 2 90139466 90139466 G T IGKV1D-16 Silent p.G79G 0.38 TCGA-LN-A4MR-01 2 99634813 99634813 C T TSGA10 Splice_Site p.X641_splice 0.19 TCGA-LN-A4MR-01 3 108776315 108776315 T G MORC1 Missense_Mutation p.R350S 0.18 deleterious(0) benign(0.066) TCGA-LN-A4MR-01 3 121591519 121591519 C G EAF2 Missense_Mutation p.S207C 0.36 deleterious(0.04) possibly_damaging(0.707) TCGA-LN-A4MR-01 3 122081851 122081851 C T CCDC58 Silent p.L116L 0.31 TCGA-LN-A4MR-01 3 122121698 122121698 A C FAM162A Silent p.T42T 0.18 TCGA-LN-A4MR-01 3 123301073 123301073 C T PTPLB Missense_Mutation p.G87R 0.30 tolerated(0.35) possibly_damaging(0.827) TCGA-LN-A4MR-01 3 135866361 135866361 G C PPP2R3A 3'UTR 0.32 TCGA-LN-A4MR-01 3 158363966 158363966 G C GFM1 Missense_Mutation p.D83H 0.25 deleterious(0) probably_damaging(1) TCGA-LN-A4MR-01 3 182987961 182987961 C G B3GNT5 Missense_Mutation p.I125M 0.34 deleterious(0.02) possibly_damaging(0.478) TCGA-LN-A4MR-01 3 185347753 185347753 C G SENP2 3'UTR 0.19 TCGA-LN-A4MR-01 3 185347774 185347774 C G SENP2 3'UTR 0.21 TCGA-LN-A4MR-01 3 185348476 185348476 C G SENP2 3'UTR 0.30 TCGA-LN-A4MR-01 3 185348488 185348488 C T SENP2 3'UTR 0.29 TCGA-LN-A4MR-01 3 188593637 188593637 G C LPP 3'UTR 0.37 TCGA-LN-A4MR-01 3 29941194 29941199 AGGTCC - RBMS3 Splice_Site p.X297_splice 0.33 TCGA-LN-A4MR-01 3 42265157 42265157 G A TRAK1 Missense_Mutation p.M930I 0.48 deleterious(0.03) probably_damaging(0.943) TCGA-LN-A4MR-01 3 64636815 64636815 G T ADAMTS9 Missense_Mutation p.N447K 0.48 deleterious(0) benign(0.261) TCGA-LN-A4MR-01 3 77681778 77681778 G A ROBO2 Intron 0.22 TCGA-LN-A4MR-01 4 104065534 104065534 A G CENPE Missense_Mutation p.V1700A 0.40 benign(0.008) TCGA-LN-A4MR-01 4 140454373 140454373 G A SETD7 Silent p.F106F 0.45 TCGA-LN-A4MR-01 4 156137685 156137685 T - NPY2R 3'UTR 0.14 TCGA-LN-A4MR-01 4 15780234 15780234 G C CD38 Missense_Mutation p.R66P 0.45 deleterious(0) probably_damaging(1) TCGA-LN-A4MR-01 4 162680564 162680564 G C FSTL5 Missense_Mutation p.F242L 0.23 deleterious(0.01) probably_damaging(0.914) TCGA-LN-A4MR-01 4 170652975 170652975 C G C4orf27 Missense_Mutation p.E263D 0.30 tolerated(0.1) benign(0.021) TCGA-LN-A4MR-01 4 90647374 90647374 G A SNCA 3'UTR 0.19 TCGA-LN-A4MR-01 4 95497125 95497125 C T PDLIM5 Missense_Mutation p.S108F 0.20 deleterious(0.01) benign(0.105) TCGA-LN-A4MR-01 5 1079523 1079523 C T SLC12A7 Silent p.T462T 0.12 TCGA-LN-A4MR-01 5 137089438 137089438 T C HNRNPA0 Silent p.K106K 0.53 TCGA-LN-A4MR-01 5 140764474 140764474 G A PCDHGA7 Missense_Mutation p.E670K 0.57 deleterious_low_confidence(0) benign(0.158) TCGA-LN-A4MR-01 5 142513550 142513550 G T ARHGAP26 Missense_Mutation p.D573Y 0.53 deleterious(0) probably_damaging(0.92) TCGA-LN-A4MR-01 5 157214829 157214829 T C CLINT1 Missense_Mutation p.N586S 0.62 tolerated(0.58) benign(0.003) TCGA-LN-A4MR-01 5 170837816 170837816 G A NPM1 3'UTR 0.44 TCGA-LN-A4MR-01 5 176719054 176719054 G T NSD1 Nonsense_Mutation p.E2120* 0.48 TCGA-LN-A4MR-01 5 5473686 5473686 G A KIAA0947 Missense_Mutation p.V2080I 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-LN-A4MR-01 5 82936972 82936972 T C HAPLN1 3'UTR 0.73 TCGA-LN-A4MR-01 6 10398177 10398177 T A TFAP2A 3'UTR 0.30 TCGA-LN-A4MR-01 6 121481218 121481218 G A TBC1D32 Missense_Mutation p.S904L 0.52 tolerated(0.12) possibly_damaging(0.46) TCGA-LN-A4MR-01 6 137019722 137019722 G A MAP3K5 Silent p.L237L 0.54 TCGA-LN-A4MR-01 6 147123814 147123815 - A ADGB Intron 0.22 TCGA-LN-A4MR-01 6 166778737 166778737 T C MPC1 3'UTR 0.53 TCGA-LN-A4MR-01 6 20490452 20490452 C G E2F3 Missense_Mutation p.L397V 0.37 tolerated(0.15) benign(0.055) TCGA-LN-A4MR-01 6 26031889 26031889 C G HIST1H3B Missense_Mutation p.E134Q 0.24 deleterious_low_confidence(0.01) probably_damaging(0.941) TCGA-LN-A4MR-01 6 31692520 31692520 C T C6orf25 Intron 0.36 TCGA-LN-A4MR-01 6 31692525 31692525 C T C6orf25 Intron 0.32 TCGA-LN-A4MR-01 6 31696815 31696815 G A DDAH2 Nonsense_Mutation p.Q42* 0.14 TCGA-LN-A4MR-01 6 33421138 33421138 C A SYNGAP1 3'UTR 0.32 TCGA-LN-A4MR-01 6 38743696 38743696 T C DNAH8 Missense_Mutation p.L427S 0.10 benign(0.002) TCGA-LN-A4MR-01 6 7250195 7250195 C G RREB1 3'UTR 0.30 TCGA-LN-A4MR-01 7 30118277 30118277 G C PLEKHA8 Missense_Mutation p.Q478H 0.18 tolerated(0.23) benign(0.01) TCGA-LN-A4MR-01 7 43917445 43917445 C T URGCP Silent p.Q539Q 0.49 TCGA-LN-A4MR-01 7 6026532 6026532 T A PMS2 Missense_Mutation p.M622L 0.61 tolerated(0.55) benign(0.004) TCGA-LN-A4MR-01 7 87505953 87505953 G T DBF4 5'UTR 0.40 TCGA-LN-A4MR-01 7 91570243 91570243 G T AKAP9 5'UTR 0.54 TCGA-LN-A4MR-01 7 99226869 99226869 G A ZSCAN25 Silent p.A287A 0.32 TCGA-LN-A4MR-01 8 145057845 145057845 C A PARP10 Nonsense_Mutation p.E638* 0.45 TCGA-LN-A4MR-01 8 42196087 42196087 G C POLB 5'UTR 0.41 TCGA-LN-A4MR-01 9 101050547 101050547 C G GABBR2 3'UTR 0.22 TCGA-LN-A4MR-01 9 102713526 102713526 C G STX17 Missense_Mutation p.T125S 0.23 tolerated(0.71) benign(0.001) TCGA-LN-A4MR-01 9 125582567 125582567 C A PDCL Missense_Mutation p.A235S 0.18 deleterious(0.01) probably_damaging(0.997) TCGA-LN-A4MR-01 9 130931405 130931405 C T CIZ1 Missense_Mutation p.E741K 0.27 tolerated(0.05) possibly_damaging(0.509) TCGA-LN-A4MR-01 9 130996366 130996366 G A DNM1 Missense_Mutation p.E468K 0.36 tolerated(0.11) probably_damaging(0.914) TCGA-LN-A4MR-01 9 141016131 141016131 G T CACNA1B Nonsense_Mutation p.E2234* 0.42 TCGA-LN-A4MR-01 9 3395586 3395586 C G RFX3 Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0) possibly_damaging(0.69) TCGA-LN-A4MR-01 9 95847188 95847188 G C SUSD3 3'UTR 0.50 TCGA-LN-A4MR-01 X 135429365 135429365 C T GPR112 Missense_Mutation p.T1167I 0.19 tolerated(0.13) benign(0.044) TCGA-LN-A4MR-01 X 144910865 144910865 G T TMEM257 3'UTR 0.57 TCGA-LN-A4MR-01 X 47486320 47486320 G A CFP Silent p.G264G 0.50 TCGA-LN-A4MR-01 X 56590987 56590987 C - UBQLN2 Frame_Shift_Del p.P228Qfs*3 0.33 TCGA-LN-A4MR-01 X 62570918 62570918 C T SPIN4 5'UTR 0.33 TCGA-LN-A4MR-01 X 70712092 70712092 G C Y_RNA 5'Flank 0.40 TCGA-LN-A5U5-01 10 15091715 15091715 C A OLAH Silent p.G38G 0.48 TCGA-LN-A5U5-01 11 120998865 120998865 G A TECTA Missense_Mutation p.A727T 0.26 tolerated(0.38) benign(0.01) TCGA-LN-A5U5-01 11 15260470 15260470 C A INSC Missense_Mutation p.Q462K 0.06 tolerated(0.49) benign(0.117) TCGA-LN-A5U5-01 11 17111318 17111318 T C PIK3C2A Silent p.K1676K 0.24 TCGA-LN-A5U5-01 11 20529974 20529974 C A PRMT3 3'UTR 0.22 TCGA-LN-A5U5-01 11 62444034 62444035 - C UBXN1 3'UTR 0.29 TCGA-LN-A5U5-01 11 6580456 6580456 C T DNHD1 Silent p.H3154H 0.46 TCGA-LN-A5U5-01 12 100955761 100955761 G T NR1H4 Missense_Mutation p.V403F 0.32 deleterious(0) probably_damaging(0.987) TCGA-LN-A5U5-01 12 31945089 31945089 G C H3F3C Silent p.T4T 0.23 TCGA-LN-A5U5-01 12 49426916 49426916 G A KMT2D Nonsense_Mutation p.Q3858* 0.49 TCGA-LN-A5U5-01 12 54383780 54383780 C T HOXC10 3'UTR 0.23 TCGA-LN-A5U5-01 12 55846702 55846702 C T OR6C2 Silent p.A235A 0.27 TCGA-LN-A5U5-01 13 103524566 103524566 T C BIVM-ERCC5 Silent p.A1325A 0.24 TCGA-LN-A5U5-01 13 107195790 107195790 T C ARGLU1 3'UTR 0.39 TCGA-LN-A5U5-01 14 24035227 24035227 C A AP1G2 Intron 0.24 TCGA-LN-A5U5-01 14 25325274 25325274 C A STXBP6 Missense_Mutation p.A107S 0.31 tolerated(0.1) benign(0.04) TCGA-LN-A5U5-01 15 43748741 43748741 T G TP53BP1 Missense_Mutation p.M689L 0.64 tolerated(0.28) benign(0.001) TCGA-LN-A5U5-01 15 68122570 68122570 G A SKOR1 Missense_Mutation p.E720K 0.67 deleterious_low_confidence(0) possibly_damaging(0.486) TCGA-LN-A5U5-01 16 2111977 2111977 G T TSC2 Nonsense_Mutation p.E409* 0.30 TCGA-LN-A5U5-01 16 29998794 29998794 C A TAOK2 Silent p.G1067G 0.43 TCGA-LN-A5U5-01 16 3705487 3705487 T A DNASE1 Missense_Mutation p.M38K 0.05 tolerated(0.27) probably_damaging(0.949) TCGA-LN-A5U5-01 16 51174133 51174133 G A SALL1 Missense_Mutation p.S667F 0.38 deleterious(0.01) probably_damaging(0.971) TCGA-LN-A5U5-01 16 5121961 5121961 G A ALG1 Silent p.A37A 0.28 TCGA-LN-A5U5-01 16 57416011 57416011 G A CX3CL1 Silent p.Q87Q 0.45 TCGA-LN-A5U5-01 16 58018605 58018605 G A TEPP Silent p.A172A 0.33 TCGA-LN-A5U5-01 16 72154011 72154011 G A PMFBP1 Intron 0.34 TCGA-LN-A5U5-01 16 88801195 88801195 G T PIEZO1 Missense_Mutation p.S620R 0.23 deleterious(0.04) possibly_damaging(0.851) TCGA-LN-A5U5-01 17 38567403 38567403 G T TOP2A Missense_Mutation p.S387R 0.39 deleterious(0) benign(0.363) TCGA-LN-A5U5-01 17 56663385 56663385 C A TEX14 Missense_Mutation p.W955C 0.34 tolerated(0.14) probably_damaging(0.971) TCGA-LN-A5U5-01 17 7156110 7156110 G T ELP5 Missense_Mutation p.R39L 0.26 deleterious(0) probably_damaging(1) TCGA-LN-A5U5-01 17 7577595 7577595 C - TP53 Frame_Shift_Del p.C229Lfs*18 0.47 TCGA-LN-A5U5-01 17 9814245 9814245 A G GAS7 3'Flank 0.27 TCGA-LN-A5U5-01 18 47810910 47810911 - GCC CXXC1 In_Frame_Ins p.R351dup 0.50 TCGA-LN-A5U5-01 19 36018071 36018071 C T SBSN Silent p.G371G 0.33 TCGA-LN-A5U5-01 19 39963105 39963105 C T SUPT5H Silent p.I669I 0.35 TCGA-LN-A5U5-01 19 53282087 53282087 G A ZNF600 5'UTR 0.31 TCGA-LN-A5U5-01 19 6690725 6690725 T C C3 Missense_Mutation p.N1135S 0.42 tolerated(0.38) benign(0) TCGA-LN-A5U5-01 1 100207810 100207810 C T FRRS1 Missense_Mutation p.R118K 0.43 tolerated(0.05) benign(0.023) TCGA-LN-A5U5-01 1 101456046 101456046 A - DPH5 Frame_Shift_Del p.I259Nfs*9 0.28 TCGA-LN-A5U5-01 1 150978596 150978596 C T FAM63A Silent p.T12T 0.06 TCGA-LN-A5U5-01 1 151278723 151278723 G A PI4KB Silent p.P445P 0.54 TCGA-LN-A5U5-01 1 183867029 183867029 A G RGL1 Missense_Mutation p.M445V 0.25 deleterious(0.03) possibly_damaging(0.785) TCGA-LN-A5U5-01 1 20066381 20066381 A C TMCO4 Missense_Mutation p.V372G 0.38 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U5-01 1 225155192 225155192 C A DNAH14 Silent p.S186S 0.26 TCGA-LN-A5U5-01 1 35658710 35658710 C T SFPQ 5'UTR 0.40 TCGA-LN-A5U5-01 1 47074494 47074494 T C MOB3C 3'UTR 0.21 TCGA-LN-A5U5-01 1 67108534 67108534 C T SGIP1 Silent p.P90P 0.20 TCGA-LN-A5U5-01 1 68906589 68906589 C A RPE65 Missense_Mutation p.G197V 0.44 tolerated(0.08) probably_damaging(1) TCGA-LN-A5U5-01 21 32253537 32253537 G T KRTAP11-1 Missense_Mutation p.P103T 0.41 deleterious(0.01) probably_damaging(1) TCGA-LN-A5U5-01 22 27445847 27445847 C T CTA-992D9.6 RNA 0.32 TCGA-LN-A5U5-01 2 178098924 178098944 GACTGAAGTCAAATACTTCTC - NFE2L2 In_Frame_Del p.R34_S40del 0.72 TCGA-LN-A5U5-01 2 179588638 179588638 G A TTN Silent p.C7116C 0.16 TCGA-LN-A5U5-01 2 189454467 189454467 C T GULP1 Intron 0.68 TCGA-LN-A5U5-01 2 191066949 191066949 T C C2orf88 3'UTR 0.81 TCGA-LN-A5U5-01 2 204255850 204255850 G T ABI2 Missense_Mutation p.G182W 0.82 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U5-01 2 209106806 209106806 C T IDH1 Missense_Mutation p.M254I 0.13 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-LN-A5U5-01 2 219267102 219267102 G C CTDSP1 Missense_Mutation p.V118L 0.67 deleterious(0.01) benign(0.092) TCGA-LN-A5U5-01 3 183818349 183818349 G A HTR3E Silent p.V63V 0.17 TCGA-LN-A5U5-01 3 52551965 52551965 C A STAB1 Nonsense_Mutation p.C1569* 0.52 TCGA-LN-A5U5-01 3 99567929 99567929 G T FILIP1L Missense_Mutation p.P864H 0.43 deleterious(0) probably_damaging(0.986) TCGA-LN-A5U5-01 4 2952919 2952928 TTTCTTAACA - NOP14 Frame_Shift_Del p.V306Qfs*9 0.30 TCGA-LN-A5U5-01 4 3514590 3514590 C T LRPAP1 3'UTR 0.07 TCGA-LN-A5U5-01 5 111540178 111540178 A G EPB41L4A Missense_Mutation p.Y424H 0.45 deleterious(0) probably_damaging(0.983) TCGA-LN-A5U5-01 5 113698694 113698694 C G KCNN2 Missense_Mutation p.N74K 0.35 tolerated_low_confidence(0.36) benign(0.026) TCGA-LN-A5U5-01 5 150443229 150443229 C A TNIP1 Silent p.L72L 0.38 TCGA-LN-A5U5-01 6 132054857 132054857 C G ENPP3 Missense_Mutation p.P695A 0.27 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U5-01 6 152614873 152614873 C G SYNE1 Missense_Mutation p.K5954N 0.07 probably_damaging(0.959) TCGA-LN-A5U5-01 6 24566850 24566850 C T KIAA0319 Missense_Mutation p.R756Q 0.48 deleterious(0) probably_damaging(0.958) TCGA-LN-A5U5-01 6 26252252 26252252 C G HIST1H2BH Missense_Mutation p.S125C 0.50 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-LN-A5U5-01 7 153584641 153584641 T - DPP6 5'UTR 0.32 TCGA-LN-A5U5-01 7 39247015 39247015 G A POU6F2 Missense_Mutation p.A103T 0.11 deleterious(0.01) probably_damaging(0.98) TCGA-LN-A5U5-01 7 6210543 6210543 C T CYTH3 Missense_Mutation p.R210H 0.31 deleterious(0) probably_damaging(0.972) TCGA-LN-A5U5-01 8 101146049 101146049 C T FBXO43 Missense_Mutation p.R703Q 0.32 tolerated(0.06) benign(0.337) TCGA-LN-A5U5-01 8 17424379 17424379 G A SLC7A2 3'UTR 0.56 TCGA-LN-A5U5-01 8 28196578 28196578 G A PNOC Missense_Mutation p.E50K 0.67 tolerated(0.11) benign(0.029) TCGA-LN-A5U5-01 8 35425616 35425616 G T UNC5D Missense_Mutation p.G108V 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A5U5-01 8 61496839 61496839 G A RAB2A Missense_Mutation p.D87N 0.21 deleterious(0) probably_damaging(1) TCGA-LN-A5U5-01 9 107379528 107379528 T C OR13C9 3'Flank 0.27 TCGA-LN-A5U5-01 9 117909 117909 C T FOXD4 Missense_Mutation p.E71K 0.09 tolerated(0.06) benign(0.174) TCGA-LN-A5U5-01 9 135702310 135702310 T C AK8 Missense_Mutation p.I230V 0.22 tolerated(0.21) benign(0.055) TCGA-LN-A5U5-01 9 135750508 135750508 C T AK8 Missense_Mutation p.D55N 0.30 tolerated(0.06) benign(0.008) TCGA-LN-A5U5-01 9 140657246 140657246 A C EHMT1 Missense_Mutation p.M541L 0.74 deleterious(0) benign(0.066) TCGA-LN-A5U5-01 9 27948528 27948529 - T LINGO2 3'UTR 0.79 TCGA-LN-A5U5-01 9 72783711 72783711 G C MAMDC2 Missense_Mutation p.E500Q 0.31 tolerated(0.42) benign(0.179) TCGA-LN-A5U5-01 9 84268949 84268949 A C TLE1 Silent p.T79T 0.20 TCGA-LN-A5U5-01 X 142968056 142968056 G C UBE2NL 3'UTR 0.80 TCGA-LN-A5U5-01 X 146363520 146363520 A C MIR514A2 RNA 0.50 TCGA-LN-A5U5-01 X 31139625 31139625 C A DMD 3'UTR 0.55 TCGA-LN-A5U6-01 10 105762560 105762560 A T SLK Missense_Mutation p.I542F 0.32 deleterious(0.03) benign(0.258) TCGA-LN-A5U6-01 10 120871395 120871395 A T FAM45A Missense_Mutation p.D96V 0.12 deleterious(0) probably_damaging(0.955) TCGA-LN-A5U6-01 10 127705709 127705709 C T ADAM12 3'UTR 0.24 TCGA-LN-A5U6-01 10 135278425 135278425 A G SPRN Intron 0.36 TCGA-LN-A5U6-01 10 135345740 135345740 G T CYP2E1 Missense_Mutation p.M200I 0.33 tolerated(0.38) possibly_damaging(0.482) TCGA-LN-A5U6-01 10 7628031 7628031 G T ITIH5 Missense_Mutation p.T314N 0.33 deleterious(0) probably_damaging(0.918) TCGA-LN-A5U6-01 11 123908903 123908903 C G OR10G7 Missense_Mutation p.G269A 0.53 tolerated(0.54) benign(0.05) TCGA-LN-A5U6-01 11 17809891 17809891 C G SERGEF Missense_Mutation p.W373S 0.26 tolerated(0.24) benign(0.173) TCGA-LN-A5U6-01 11 18955619 18955619 A G MRGPRX1 Missense_Mutation p.L238P 0.25 deleterious(0.02) possibly_damaging(0.648) TCGA-LN-A5U6-01 11 20066599 20066599 C A NAV2 Silent p.G1118G 0.34 TCGA-LN-A5U6-01 11 55541412 55541412 G A OR5D13 Missense_Mutation p.D167N 0.19 tolerated(0.2) benign(0) TCGA-LN-A5U6-01 11 58384886 58384886 G T ZFP91 Missense_Mutation p.D474Y 0.75 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-LN-A5U6-01 11 71713012 71713012 G A IL18BP 3'UTR 0.14 TCGA-LN-A5U6-01 12 51064999 51064999 C T DIP2B Missense_Mutation p.S153F 0.37 deleterious(0.01) possibly_damaging(0.786) TCGA-LN-A5U6-01 12 6309666 6309667 - T CD9 Frame_Shift_Ins p.M1? 0.23 TCGA-LN-A5U6-01 12 81536947 81536947 A T ACSS3 Missense_Mutation p.Q281L 0.39 tolerated(0.23) benign(0.122) TCGA-LN-A5U6-01 12 8904626 8904626 G A RIMKLB Silent p.T160T 0.25 TCGA-LN-A5U6-01 12 92539233 92539234 - A BTG1 Frame_Shift_Ins p.R27Sfs*27 0.34 TCGA-LN-A5U6-01 12 96180836 96180836 G A NTN4 Missense_Mutation p.P156S 0.24 deleterious(0.04) possibly_damaging(0.61) TCGA-LN-A5U6-01 12 96180837 96180837 C A NTN4 Missense_Mutation p.K155N 0.25 deleterious(0.04) possibly_damaging(0.456) TCGA-LN-A5U6-01 13 109704676 109704676 G T MYO16 Missense_Mutation p.L945F 0.15 deleterious(0.01) possibly_damaging(0.582) TCGA-LN-A5U6-01 13 25161430 25161430 C G RP11-556N21.1 RNA 0.35 TCGA-LN-A5U6-01 13 29675068 29675068 G T MTUS2 Missense_Mutation p.G879W 0.36 tolerated(0.12) possibly_damaging(0.548) TCGA-LN-A5U6-01 13 32877982 32877982 G A ZAR1L 3'UTR 0.29 TCGA-LN-A5U6-01 13 39438423 39438423 G A FREM2 Missense_Mutation p.V2555M 0.14 deleterious(0.01) benign(0.231) TCGA-LN-A5U6-01 14 104139456 104139456 G A KLC1 Missense_Mutation p.A365T 0.23 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U6-01 14 69701701 69701701 C A EXD2 Missense_Mutation p.D334E 0.69 tolerated(0.06) possibly_damaging(0.55) TCGA-LN-A5U6-01 15 48595067 48595067 G C SLC12A1 Missense_Mutation p.L1095F 0.28 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U6-01 16 54967577 54967577 A G IRX5 Missense_Mutation p.Y415C 0.10 deleterious(0) unknown(0) TCGA-LN-A5U6-01 16 69458712 69458712 G A CYB5B Nonsense_Mutation p.W42* 0.57 TCGA-LN-A5U6-01 16 69458713 69458713 C T CYB5B Missense_Mutation p.L43F 0.56 deleterious(0.04) benign(0.059) TCGA-LN-A5U6-01 16 71680883 71680883 G A PHLPP2 3'UTR 0.60 TCGA-LN-A5U6-01 16 75140446 75140446 C T ZNRF1 3'UTR 0.19 TCGA-LN-A5U6-01 16 84203815 84203815 G A DNAAF1 Missense_Mutation p.D461N 0.29 tolerated(0.55) benign(0.035) TCGA-LN-A5U6-01 16 88788401 88788401 G C PIEZO1 Missense_Mutation p.R1677G 0.30 tolerated(0.08) benign(0.062) TCGA-LN-A5U6-01 16 90072645 90072645 C T DBNDD1 3'UTR 0.25 TCGA-LN-A5U6-01 17 28758892 28758893 - T CPD Frame_Shift_Ins p.S708Ffs*11 0.21 TCGA-LN-A5U6-01 17 50235244 50235244 C T CA10 5'UTR 0.50 TCGA-LN-A5U6-01 17 60484452 60484452 T C EFCAB3 Missense_Mutation p.V301A 0.38 tolerated(0.2) benign(0.384) TCGA-LN-A5U6-01 17 7579497 7579498 GA - TP53 Frame_Shift_Del p.P64Qfs*84 0.67 TCGA-LN-A5U6-01 18 24513588 24513588 C T CHST9 Intron 0.40 TCGA-LN-A5U6-01 18 29522943 29522944 - GCGC TRAPPC8 5'UTR 0.12 TCGA-LN-A5U6-01 19 14236981 14237016 CCGAGTCTAGGATCTGATCAAATTCCTCACTCTCAG - ASF1B In_Frame_Del p.A48_S59del 0.62 TCGA-LN-A5U6-01 19 32927459 32927459 G C DPY19L3 Missense_Mutation p.V146L 0.28 tolerated(0.52) benign(0.001) TCGA-LN-A5U6-01 19 38056953 38056953 G A ZNF571 Missense_Mutation p.S126F 0.68 tolerated(0.76) benign(0.015) TCGA-LN-A5U6-01 19 50093637 50093637 G A PRRG2 Silent p.R200R 0.46 TCGA-LN-A5U6-01 19 53888325 53888325 A G ZNF525 3'Flank 0.31 TCGA-LN-A5U6-01 19 54223358 54223358 T G MIR520D RNA 0.27 TCGA-LN-A5U6-01 19 56090160 56090160 G - ZNF579 Frame_Shift_Del p.W283Gfs*122 0.31 TCGA-LN-A5U6-01 19 56090162 56090162 G A ZNF579 Missense_Mutation p.P282S 0.38 tolerated(0.07) probably_damaging(0.966) TCGA-LN-A5U6-01 19 56090163 56090163 C A ZNF579 Missense_Mutation p.R281S 0.38 tolerated(0.1) benign(0.443) TCGA-LN-A5U6-01 1 104116531 104116531 G C AMY2B Missense_Mutation p.A239P 0.03 tolerated(0.45) benign(0.001) TCGA-LN-A5U6-01 1 110882727 110882727 G T RBM15 Missense_Mutation p.A234S 0.31 tolerated(0.1) probably_damaging(0.998) TCGA-LN-A5U6-01 1 110882728 110882728 C T RBM15 Missense_Mutation p.A234V 0.31 deleterious(0) probably_damaging(0.998) TCGA-LN-A5U6-01 1 112003655 112003655 C A ATP5F1 3'UTR 0.26 TCGA-LN-A5U6-01 1 115537630 115537630 T A SYCP1 Nonsense_Mutation p.L974* 0.19 TCGA-LN-A5U6-01 1 117632831 117632842 GTAATCAAGTTT - TTF2 Splice_Site p.X832_splice 0.15 TCGA-LN-A5U6-01 1 156837937 156837937 G A NTRK1 Missense_Mutation p.R157H 0.54 tolerated(0.77) benign(0) TCGA-LN-A5U6-01 1 156914188 156914188 C T ARHGEF11 Missense_Mutation p.G1010E 0.34 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U6-01 1 175054550 175054550 C T TNN Missense_Mutation p.P415L 0.19 tolerated(0.06) probably_damaging(1) TCGA-LN-A5U6-01 1 179955361 179955361 G C CEP350 Missense_Mutation p.R15S 0.30 possibly_damaging(0.905) TCGA-LN-A5U6-01 1 207930371 207930371 A T CD46 Missense_Mutation p.E37V 0.31 tolerated(0.05) benign(0.064) TCGA-LN-A5U6-01 1 240370785 240370785 G T FMN2 Silent p.L891L 0.27 TCGA-LN-A5U6-01 1 26299081 26299081 C T PAFAH2 Missense_Mutation p.R351Q 0.39 tolerated(0.32) benign(0.026) TCGA-LN-A5U6-01 1 36805394 36805394 T C STK40 3'UTR 0.38 TCGA-LN-A5U6-01 1 45292310 45292310 C T PTCH2 Silent p.V942V 0.26 TCGA-LN-A5U6-01 1 77095055 77095055 C T ST6GALNAC3 3'UTR 0.38 TCGA-LN-A5U6-01 1 77529333 77529333 T C ST6GALNAC5 3'UTR 0.23 TCGA-LN-A5U6-01 1 94338752 94338752 T C DNTTIP2 Missense_Mutation p.I609V 0.25 deleterious(0.03) benign(0.081) TCGA-LN-A5U6-01 20 33050008 33050008 G A ITCH Missense_Mutation p.R510H 0.27 deleterious(0) probably_damaging(0.992) TCGA-LN-A5U6-01 21 39755332 39755332 T C ERG Missense_Mutation p.Y485C 0.08 deleterious(0.02) benign(0.366) TCGA-LN-A5U6-01 21 47552161 47552161 G A COL6A2 Missense_Mutation p.A919T 0.72 tolerated(0.49) benign(0.003) TCGA-LN-A5U6-01 22 24124522 24124522 C T AP000349.1 Missense_Mutation p.R231Q 0.28 unknown(0) TCGA-LN-A5U6-01 22 50715316 50715316 A - PLXNB2 Frame_Shift_Del p.L1739Rfs*32 0.30 TCGA-LN-A5U6-01 2 109087996 109087996 G A GCC2 Silent p.E737E 0.33 TCGA-LN-A5U6-01 2 109087999 109087999 A T GCC2 Missense_Mutation p.Q738H 0.36 deleterious(0.01) benign(0.084) TCGA-LN-A5U6-01 2 118698834 118698834 T C CCDC93 Missense_Mutation p.I485V 0.05 deleterious(0.01) benign(0.156) TCGA-LN-A5U6-01 2 131099484 131099484 T A CCDC115 Missense_Mutation p.M49L 0.39 deleterious(0) possibly_damaging(0.799) TCGA-LN-A5U6-01 2 145156713 145156713 C G ZEB2 Missense_Mutation p.V681L 0.54 deleterious(0.02) possibly_damaging(0.581) TCGA-LN-A5U6-01 2 166872165 166872165 C T SCN1A Missense_Mutation p.V1168I 0.29 tolerated(0.22) benign(0.018) TCGA-LN-A5U6-01 2 173338917 173338917 G C ITGA6 Missense_Mutation p.E304Q 0.46 tolerated(0.12) probably_damaging(0.98) TCGA-LN-A5U6-01 2 198256808 198256808 T C SF3B1 3'UTR 0.21 TCGA-LN-A5U6-01 2 218679706 218679706 G A TNS1 Missense_Mutation p.T1449M 0.06 deleterious(0) benign(0.084) TCGA-LN-A5U6-01 2 225710010 225710010 G C DOCK10 Missense_Mutation p.H797Q 0.15 tolerated(0.06) benign(0.112) TCGA-LN-A5U6-01 2 230693989 230693989 C G TRIP12 Missense_Mutation p.R409T 0.29 deleterious(0) probably_damaging(0.992) TCGA-LN-A5U6-01 2 231911623 231911623 C A C2orf72 Missense_Mutation p.L259M 0.15 tolerated(0.18) benign(0.422) TCGA-LN-A5U6-01 2 29294078 29294078 C T C2orf71 Missense_Mutation p.R1017K 0.22 tolerated(0.69) benign(0.098) TCGA-LN-A5U6-01 2 48602081 48602081 A C FOXN2 Missense_Mutation p.K265N 0.23 tolerated(0.48) benign(0.424) TCGA-LN-A5U6-01 2 70168101 70168101 C G MXD1 3'UTR 0.59 TCGA-LN-A5U6-01 2 79312718 79312718 C A REG1B Missense_Mutation p.W111C 0.06 deleterious(0) probably_damaging(0.97) TCGA-LN-A5U6-01 2 90260021 90260021 A G IGKV1D-8 Missense_Mutation p.T42A 0.28 deleterious(0.02) benign(0.154) TCGA-LN-A5U6-01 2 9630607 9630607 C T ADAM17 Missense_Mutation p.R725H 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A5U6-01 3 108751662 108751662 A C MORC1 Silent p.L490L 0.15 TCGA-LN-A5U6-01 3 119452302 119452302 T A MAATS1 Silent p.G431G 0.55 TCGA-LN-A5U6-01 3 119530496 119530496 C T NR1I2 Missense_Mutation p.R187W 0.26 tolerated(0.05) benign(0) TCGA-LN-A5U6-01 3 164730787 164730787 G A SI Missense_Mutation p.T1348M 0.23 deleterious(0.01) probably_damaging(0.911) TCGA-LN-A5U6-01 3 165548074 165548074 G A BCHE Silent p.L250L 0.16 TCGA-LN-A5U6-01 3 186944257 186944257 G A MASP1 Missense_Mutation p.P498L 0.26 tolerated(0.32) benign(0.007) TCGA-LN-A5U6-01 3 188594022 188594022 A G LPP 3'UTR 0.33 TCGA-LN-A5U6-01 3 30713299 30713299 G A TGFBR2 Silent p.K233K 0.22 TCGA-LN-A5U6-01 3 42659117 42659117 C G NKTR Missense_Mutation p.N38K 0.47 deleterious_low_confidence(0) unknown(0) TCGA-LN-A5U6-01 4 119163246 119163246 G A NDST3 Missense_Mutation p.D781N 0.18 tolerated(0.45) benign(0.064) TCGA-LN-A5U6-01 4 119978554 119978554 A C SYNPO2 Splice_Site p.X1085_splice 0.21 TCGA-LN-A5U6-01 4 167658627 167658627 C T SPOCK3 Missense_Mutation p.A378T 0.24 tolerated(0.29) benign(0.068) TCGA-LN-A5U6-01 4 188925348 188925348 T C ZFP42 3'UTR 0.33 TCGA-LN-A5U6-01 4 71346520 71346520 G C MUC7 Missense_Mutation p.S20T 0.52 deleterious(0.02) possibly_damaging(0.801) TCGA-LN-A5U6-01 4 84406270 84406270 G T FAM175A 5'UTR 0.40 TCGA-LN-A5U6-01 5 72384732 72384732 A T FCHO2 3'UTR 0.38 TCGA-LN-A5U6-01 5 96098742 96098742 A G ERAP1 3'UTR 0.70 TCGA-LN-A5U6-01 6 108489319 108489319 C T NR2E1 Intron 0.68 TCGA-LN-A5U6-01 6 121768609 121768609 A G GJA1 Missense_Mutation p.K206E 0.31 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U6-01 6 149982764 149982764 T C LATS1 3'UTR 0.15 TCGA-LN-A5U6-01 6 152751661 152751661 C T SYNE1 Missense_Mutation p.G1549R 0.20 possibly_damaging(0.516) TCGA-LN-A5U6-01 6 25845682 25845682 T A SLC17A3 Silent p.L475L 0.71 TCGA-LN-A5U6-01 6 26017677 26017677 G T HIST1H1A Missense_Mutation p.T95K 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A5U6-01 6 36567835 36567835 C A SRSF3 Intron 0.73 TCGA-LN-A5U6-01 7 100681041 100681041 C A MUC17 Missense_Mutation p.A2115D 0.34 unknown(0) TCGA-LN-A5U6-01 7 128451963 128451963 G A CCDC136 Missense_Mutation p.R713Q 0.54 tolerated(0.12) benign(0.35) TCGA-LN-A5U6-01 7 137374666 137374666 C A DGKI Nonsense_Mutation p.E162* 0.33 TCGA-LN-A5U6-01 7 150093612 150093612 G T ZNF775 Missense_Mutation p.V15L 0.11 tolerated_low_confidence(0.3) benign(0.005) TCGA-LN-A5U6-01 7 150934477 150934477 G A CHPF2 Silent p.L343L 0.21 TCGA-LN-A5U6-01 7 20451854 20451854 G T ITGB8 3'UTR 0.19 TCGA-LN-A5U6-01 7 29152428 29152428 C G CPVL Missense_Mutation p.L60F 0.15 deleterious(0.04) benign(0.316) TCGA-LN-A5U6-01 7 44104883 44104883 C A PGAM2 Silent p.V82V 0.27 TCGA-LN-A5U6-01 7 54617841 54617841 C A VSTM2A Silent p.I204I 0.14 TCGA-LN-A5U6-01 7 71868318 71868318 C T CALN1 Missense_Mutation p.E13K 0.23 tolerated_low_confidence(0.3) benign(0) TCGA-LN-A5U6-01 7 75684274 75684274 G A MDH2 Missense_Mutation p.A65T 0.12 tolerated(0.09) probably_damaging(0.971) TCGA-LN-A5U6-01 7 75684275 75684275 C A MDH2 Missense_Mutation p.A65D 0.12 deleterious(0) probably_damaging(0.988) TCGA-LN-A5U6-01 7 87778344 87778344 G A ADAM22 Missense_Mutation p.R513H 0.50 deleterious(0.02) benign(0.001) TCGA-LN-A5U6-01 7 88964139 88964139 A G ZNF804B Missense_Mutation p.K615E 0.29 deleterious(0.01) benign(0.055) TCGA-LN-A5U6-01 7 98586521 98586521 G T TRRAP Missense_Mutation p.A3179S 0.21 possibly_damaging(0.687) TCGA-LN-A5U6-01 8 125463784 125463784 A G TRMT12 Missense_Mutation p.I206V 0.21 deleterious(0.03) possibly_damaging(0.805) TCGA-LN-A5U6-01 8 132051802 132051802 C G ADCY8 Missense_Mutation p.A260P 0.11 deleterious(0.04) possibly_damaging(0.483) TCGA-LN-A5U6-01 8 92406495 92406495 C A SLC26A7 Missense_Mutation p.P662Q 0.36 probably_damaging(0.946) TCGA-LN-A5U6-01 8 95940110 95940110 C T TP53INP1 3'UTR 0.33 TCGA-LN-A5U6-01 9 117838320 117838320 C T TNC Missense_Mutation p.A981T 0.22 deleterious(0.02) possibly_damaging(0.509) TCGA-LN-A5U6-01 9 125239311 125239311 C T OR1J1 Missense_Mutation p.G299R 0.30 tolerated_low_confidence(0.1) possibly_damaging(0.655) TCGA-LN-A5U6-01 9 137779104 137779104 A C FCN2 Missense_Mutation p.Q262P 0.52 deleterious(0.01) benign(0.019) TCGA-LN-A5U6-01 9 139418316 139418317 - A NOTCH1 Frame_Shift_Ins p.A86Cfs*57 0.48 TCGA-LN-A5U6-01 9 37740199 37740199 G T FRMPD1 Missense_Mutation p.Q558H 0.72 tolerated(0.17) benign(0.004) TCGA-LN-A5U6-01 9 82336710 82336710 C T TLE4 Silent p.G631G 0.34 TCGA-LN-A5U6-01 9 86451768 86451768 A G KIF27 3'UTR 0.31 TCGA-LN-A5U6-01 X 114422839 114422839 G T LRCH2 Silent p.T148T 0.71 TCGA-LN-A5U6-01 X 153134086 153134086 G A L1CAM Silent p.T492T 0.70 TCGA-LN-A5U6-01 X 153295403 153295403 G A MECP2 3'Flank 0.81 TCGA-LN-A5U6-01 X 19568147 19568147 G TC SH3KBP1 Frame_Shift_Ins p.T480Rfs*26 0.44 TCGA-LN-A5U7-01 10 15183006 15183006 A T NMT2 Intron 0.25 TCGA-LN-A5U7-01 10 23730134 23730134 T C OTUD1 3'UTR 0.82 TCGA-LN-A5U7-01 10 300299 300299 A T ZMYND11 3'UTR 0.52 TCGA-LN-A5U7-01 10 5955768 5955768 A G FBXO18 Missense_Mutation p.T475A 0.42 tolerated(0.59) benign(0.001) TCGA-LN-A5U7-01 11 111635631 111635631 T A PPP2R1B Splice_Site p.X69_splice 0.40 TCGA-LN-A5U7-01 11 124958034 124958034 C A SLC37A2 3'UTR 0.30 TCGA-LN-A5U7-01 11 48328372 48328372 A C OR4S1 Missense_Mutation p.N200H 0.24 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U7-01 11 55322499 55322499 G A OR4C15 Silent p.E239E 0.36 TCGA-LN-A5U7-01 11 63176300 63176300 C T SLC22A9 Missense_Mutation p.P517L 0.26 deleterious(0) probably_damaging(0.978) TCGA-LN-A5U7-01 11 64877263 64877263 G A VPS51 Silent p.V582V 0.44 TCGA-LN-A5U7-01 11 66627517 66627517 G A LRFN4 Missense_Mutation p.D587N 0.29 deleterious_low_confidence(0.01) benign(0.064) TCGA-LN-A5U7-01 11 75298556 75298556 T C MAP6 Missense_Mutation p.M664V 0.50 tolerated_low_confidence(1) benign(0) TCGA-LN-A5U7-01 11 77054946 77054946 G A PAK1 Nonsense_Mutation p.Q306* 0.48 TCGA-LN-A5U7-01 11 77583381 77583381 T G AAMDC 3'UTR 0.47 TCGA-LN-A5U7-01 11 89536864 89536864 A G TRIM49 Splice_Site p.X169_splice 0.24 TCGA-LN-A5U7-01 12 104458353 104458353 C T HCFC2 Silent p.S5S 0.19 TCGA-LN-A5U7-01 12 107155486 107155486 G C RFX4 3'Flank 0.22 TCGA-LN-A5U7-01 12 109675106 109675106 A C ACACB Missense_Mutation p.K1528T 0.12 deleterious(0) probably_damaging(0.923) TCGA-LN-A5U7-01 12 121135110 121135111 - TTTG MLEC 3'UTR 0.77 TCGA-LN-A5U7-01 12 121476752 121476752 T C OASL Missense_Mutation p.Y8C 0.23 deleterious(0.01) probably_damaging(0.935) TCGA-LN-A5U7-01 12 123351980 123351980 G A VPS37B Missense_Mutation p.P181S 0.80 tolerated(0.09) benign(0.004) TCGA-LN-A5U7-01 12 4922977 4922977 T A KCNA6 3'UTR 0.25 TCGA-LN-A5U7-01 13 51995330 51995330 C T INTS6 Intron 0.26 TCGA-LN-A5U7-01 13 78472138 78472138 C T EDNRB 3'UTR 0.16 TCGA-LN-A5U7-01 14 106733166 106733166 G A IGHV1-24 Missense_Mutation p.T110M 0.68 tolerated(0.1) possibly_damaging(0.678) TCGA-LN-A5U7-01 14 21993601 21993620 ATTGTGACCCTCAGGCCGGG TTT SALL2 Frame_Shift_Del p.P81Qfs*11 0.10 TCGA-LN-A5U7-01 14 67800651 67800651 A - MPP5 3'UTR 0.17 TCGA-LN-A5U7-01 14 78023490 78023490 C T SPTLC2 Splice_Site p.X284_splice 0.21 TCGA-LN-A5U7-01 14 92471556 92471556 G C TRIP11 Missense_Mutation p.Q922E 0.49 deleterious(0) possibly_damaging(0.624) TCGA-LN-A5U7-01 14 93534373 93534373 T C ITPK1 Intron 0.18 TCGA-LN-A5U7-01 15 22368839 22368839 G A OR4M2 Silent p.E88E 0.09 TCGA-LN-A5U7-01 15 25473974 25473974 C A SNORD115-33 5'Flank 0.36 TCGA-LN-A5U7-01 16 1278443 1278443 G C TPSB2 3'UTR 0.50 TCGA-LN-A5U7-01 16 15200859 15200859 G C RP11-1186N24.5 Intron 0.90 TCGA-LN-A5U7-01 16 18937368 18937368 T C SMG1 5'UTR 0.43 TCGA-LN-A5U7-01 16 57506953 57506954 - CC DOK4 3'UTR 0.53 TCGA-LN-A5U7-01 16 65388165 65388165 G A LINC00922 RNA 0.24 TCGA-LN-A5U7-01 16 683045 683045 G A WFIKKN1 Missense_Mutation p.R212H 0.42 tolerated(0.31) benign(0.053) TCGA-LN-A5U7-01 16 710154 710154 C G WDR90 Missense_Mutation p.S1094C 0.29 deleterious(0.05) benign(0.338) TCGA-LN-A5U7-01 16 71885540 71885540 C T ATXN1L Missense_Mutation p.R633C 0.45 tolerated(0.08) benign(0) TCGA-LN-A5U7-01 16 71894143 71894143 C T ZNF821 Silent p.R339R 0.07 TCGA-LN-A5U7-01 17 19646639 19646639 G A ALDH3A1 Silent p.I100I 0.23 TCGA-LN-A5U7-01 17 27237002 27237002 G A PHF12 Intron 0.36 TCGA-LN-A5U7-01 17 45730174 45730174 A G KPNB1 Missense_Mutation p.I72V 0.07 tolerated(1) benign(0) TCGA-LN-A5U7-01 17 47373765 47373765 C G ZNF652 3'UTR 0.36 TCGA-LN-A5U7-01 17 5084962 5084962 C A ZNF594 3'UTR 0.56 TCGA-LN-A5U7-01 17 74774688 74774688 C G MFSD11 3'Flank 0.18 TCGA-LN-A5U7-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.92 tolerated(0.11) benign(0.308) TCGA-LN-A5U7-01 17 7803295 7803295 C T CHD3 Missense_Mutation p.R935C 0.32 possibly_damaging(0.898) TCGA-LN-A5U7-01 17 79139525 79139525 C T AATK Intron 0.21 TCGA-LN-A5U7-01 17 900388 900388 G A TIMM22 Silent p.A2A 0.23 TCGA-LN-A5U7-01 18 24034984 24034984 G C KCTD1 3'UTR 0.25 TCGA-LN-A5U7-01 18 40853827 40853827 G A SYT4 Silent p.T189T 0.27 TCGA-LN-A5U7-01 18 44639384 44639384 G A HDHD2 Nonsense_Mutation p.Q214* 0.12 TCGA-LN-A5U7-01 18 55144761 55144761 G C ONECUT2 3'UTR 0.24 TCGA-LN-A5U7-01 18 60639791 60639791 G A PHLPP1 Missense_Mutation p.R1202H 0.36 deleterious(0.05) possibly_damaging(0.46) TCGA-LN-A5U7-01 18 7774252 7774252 A T PTPRM Missense_Mutation p.D60V 0.26 deleterious(0.02) possibly_damaging(0.528) TCGA-LN-A5U7-01 19 14628955 14628955 C T DNAJB1 Silent p.E69E 0.51 TCGA-LN-A5U7-01 19 16059901 16059901 G C OR10H4 Missense_Mutation p.L28F 0.16 tolerated(0.46) benign(0.005) TCGA-LN-A5U7-01 19 21610041 21610041 A T ZNF493 3'UTR 0.37 TCGA-LN-A5U7-01 19 21712542 21712542 A G ZNF429 Missense_Mutation p.Y29C 0.41 deleterious(0) probably_damaging(0.995) TCGA-LN-A5U7-01 19 22018895 22018895 A T ZNF43 5'UTR 0.30 TCGA-LN-A5U7-01 19 2278932 2278932 C G C19orf35 Missense_Mutation p.R88T 0.35 deleterious(0.01) possibly_damaging(0.545) TCGA-LN-A5U7-01 19 2418044 2418044 G A TMPRSS9 Missense_Mutation p.D654N 0.24 tolerated(0.1) probably_damaging(0.936) TCGA-LN-A5U7-01 19 3808898 3808898 C G ZFR2 Missense_Mutation p.E839D 0.20 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U7-01 19 38103939 38103939 G T ZNF540 Missense_Mutation p.K586N 0.39 deleterious(0.03) probably_damaging(0.996) TCGA-LN-A5U7-01 19 41029495 41029495 G A SPTBN4 Missense_Mutation p.G1269D 0.12 tolerated(0.15) benign(0.046) TCGA-LN-A5U7-01 19 42914736 42914736 C T LIPE Missense_Mutation p.R381H 0.32 tolerated(0.08) possibly_damaging(0.679) TCGA-LN-A5U7-01 19 44536478 44536478 A G ZNF222 Silent p.K257K 0.40 TCGA-LN-A5U7-01 19 44777239 44777239 G A ZNF233 Silent p.Q142Q 0.38 TCGA-LN-A5U7-01 19 58046597 58046597 A T ZNF549 Missense_Mutation p.H53L 0.43 tolerated(0.75) benign(0.066) TCGA-LN-A5U7-01 19 58374323 58374323 G C ZNF587 3'UTR 0.32 TCGA-LN-A5U7-01 19 7152788 7152788 G A INSR Missense_Mutation p.S727L 0.38 tolerated(0.07) benign(0.11) TCGA-LN-A5U7-01 1 145209276 145209276 A T RP11-458D21.5 5'UTR 0.26 TCGA-LN-A5U7-01 1 151400365 151400365 C - POGZ Frame_Shift_Del p.V338Wfs*21 0.42 TCGA-LN-A5U7-01 1 152275131 152275131 G T FLG 3'UTR 0.35 TCGA-LN-A5U7-01 1 152284593 152284593 A G FLG Silent p.S923S 0.26 TCGA-LN-A5U7-01 1 161953792 161953792 G C OLFML2B Missense_Mutation p.S642R 0.21 tolerated(0.38) possibly_damaging(0.719) TCGA-LN-A5U7-01 1 168066418 168066418 G A GPR161 Missense_Mutation p.R163W 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A5U7-01 1 176734869 176734869 G C PAPPA2 Missense_Mutation p.V1407L 0.27 tolerated(0.53) benign(0.002) TCGA-LN-A5U7-01 1 200827408 200827408 C T CAMSAP2 3'UTR 0.33 TCGA-LN-A5U7-01 1 207218511 207218511 T C YOD1 3'UTR 0.16 TCGA-LN-A5U7-01 1 241755423 241755423 C G KMO Missense_Mutation p.L477V 0.38 deleterious_low_confidence(0.04) benign(0.018) TCGA-LN-A5U7-01 1 241755538 241755538 G A KMO 3'UTR 0.24 TCGA-LN-A5U7-01 1 248487277 248487277 A G OR2M7 Silent p.V198V 0.29 TCGA-LN-A5U7-01 1 33945122 33945122 G A ZSCAN20 Missense_Mutation p.R78H 0.47 tolerated(0.22) benign(0.005) TCGA-LN-A5U7-01 1 46083885 46083885 C G NASP 3'UTR 0.34 TCGA-LN-A5U7-01 1 70671212 70671212 C T LRRC40 Silent p.L4L 0.40 TCGA-LN-A5U7-01 1 86289379 86289379 G C COL24A1 Missense_Mutation p.Q1242E 0.24 tolerated(0.12) probably_damaging(0.998) TCGA-LN-A5U7-01 1 89890100 89890100 A G GBP1P1 Intron 0.33 TCGA-LN-A5U7-01 1 982784 982784 G T AGRN Missense_Mutation p.D1156Y 0.35 deleterious(0) probably_damaging(1) TCGA-LN-A5U7-01 20 3240608 3240608 G A C20orf194 Silent p.G980G 0.19 TCGA-LN-A5U7-01 20 36718325 36718325 G C RPRD1B 3'UTR 0.47 TCGA-LN-A5U7-01 20 44686391 44686391 C T SLC12A5 3'Flank 0.41 TCGA-LN-A5U7-01 20 49195772 49195772 G A PTPN1 Missense_Mutation p.R257Q 0.49 deleterious(0.02) probably_damaging(1) TCGA-LN-A5U7-01 20 57599009 57599009 C T TUBB1 Missense_Mutation p.S176L 0.07 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-LN-A5U7-01 21 10906971 10906971 A C TPTE Missense_Mutation p.D530E 0.15 tolerated(1) benign(0.004) TCGA-LN-A5U7-01 21 30342970 30342971 - A LTN1 Frame_Shift_Ins p.Y406Lfs*40 0.39 TCGA-LN-A5U7-01 21 34901225 34901225 G C GART Missense_Mutation p.L248V 0.47 tolerated(0.19) benign(0.001) TCGA-LN-A5U7-01 21 41496159 41496159 C T DSCAM Missense_Mutation p.R1220Q 0.57 deleterious(0.04) probably_damaging(0.941) TCGA-LN-A5U7-01 22 19207487 19207487 G A CLTCL1 Silent p.S942S 0.60 TCGA-LN-A5U7-01 22 19209533 19209533 C G CLTCL1 Missense_Mutation p.M834I 0.13 tolerated(0.39) benign(0.003) TCGA-LN-A5U7-01 22 24944925 24944925 G A GUCD1 Missense_Mutation p.H30Y 0.31 deleterious(0.01) probably_damaging(0.915) TCGA-LN-A5U7-01 2 101014417 101014417 G T CHST10 Missense_Mutation p.P127H 0.29 deleterious(0) probably_damaging(0.997) TCGA-LN-A5U7-01 2 107450593 107450593 T C ST6GAL2 Missense_Mutation p.D318G 0.41 possibly_damaging(0.651) TCGA-LN-A5U7-01 2 137872828 137872828 G A THSD7B Missense_Mutation p.S445N 0.33 tolerated(0.43) benign(0.44) TCGA-LN-A5U7-01 2 137872829 137872829 C A THSD7B Missense_Mutation p.S445R 0.33 tolerated(0.42) possibly_damaging(0.83) TCGA-LN-A5U7-01 2 175087808 175087808 G A OLA1 Missense_Mutation p.A109V 0.20 deleterious(0.03) benign(0.354) TCGA-LN-A5U7-01 2 175087809 175087809 C A OLA1 Missense_Mutation p.A109S 0.17 tolerated(0.07) benign(0.266) TCGA-LN-A5U7-01 2 178098960 178098961 - TAT NFE2L2 In_Frame_Ins p.I28dup 0.31 TCGA-LN-A5U7-01 2 189933524 189933524 A T COL5A2 Silent p.S415S 0.49 TCGA-LN-A5U7-01 2 191301211 191301211 C G MFSD6 Silent p.V152V 0.33 TCGA-LN-A5U7-01 2 209345817 209345817 A G PTH2R Missense_Mutation p.N335S 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-LN-A5U7-01 2 228996765 228996765 T C SPHKAP Silent p.E23E 0.40 TCGA-LN-A5U7-01 2 230312083 230312083 G A DNER Missense_Mutation p.H479Y 0.21 deleterious(0) possibly_damaging(0.753) TCGA-LN-A5U7-01 2 26435399 26435399 C T HADHA Intron 0.32 TCGA-LN-A5U7-01 2 27799403 27799403 C T C2orf16 5'UTR 0.27 TCGA-LN-A5U7-01 2 32289128 32289128 G T SPAST Silent p.V76V 0.41 TCGA-LN-A5U7-01 2 32757250 32757250 A G BIRC6 Intron 0.28 TCGA-LN-A5U7-01 2 62449623 62449623 A G B3GNT2 Missense_Mutation p.I90V 0.27 tolerated(0.34) benign(0) TCGA-LN-A5U7-01 3 113085073 113085073 G C WDR52 Missense_Mutation p.T843S 0.13 tolerated(0.55) benign(0.004) TCGA-LN-A5U7-01 3 126737237 126737237 G A PLXNA1 Missense_Mutation p.G1254D 0.19 deleterious(0.04) possibly_damaging(0.821) TCGA-LN-A5U7-01 3 127390276 127390276 G C PODXL2 Splice_Site p.X476_splice 0.33 TCGA-LN-A5U7-01 3 127775657 127775657 G T SEC61A1 Missense_Mutation p.R109L 0.48 deleterious(0) possibly_damaging(0.723) TCGA-LN-A5U7-01 3 130134526 130134526 G A COL6A5 Missense_Mutation p.G1600E 0.16 deleterious(0.02) probably_damaging(0.992) TCGA-LN-A5U7-01 3 130282064 130282064 G T COL6A6 Missense_Mutation p.D73Y 0.31 deleterious(0) probably_damaging(0.926) TCGA-LN-A5U7-01 3 130947497 130947497 G A NEK11 Missense_Mutation p.E509K 0.25 tolerated(0.27) benign(0.014) TCGA-LN-A5U7-01 3 149498106 149498106 A G ANKUB1 Missense_Mutation p.V124A 0.11 deleterious(0.02) benign(0.345) TCGA-LN-A5U7-01 3 150459011 150459011 A C SIAH2 3'UTR 0.22 TCGA-LN-A5U7-01 3 158460573 158460573 G T RP11-379F4.4 RNA 0.31 TCGA-LN-A5U7-01 3 160219689 160219689 C G KPNA4 3'UTR 0.12 TCGA-LN-A5U7-01 3 160804342 160804342 A G B3GALNT1 Silent p.L67L 0.09 TCGA-LN-A5U7-01 3 170219048 170219048 C G SLC7A14 Missense_Mutation p.V131L 0.16 deleterious(0.04) possibly_damaging(0.53) TCGA-LN-A5U7-01 3 183476656 183476656 C T YEATS2 Missense_Mutation p.P520L 0.19 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-LN-A5U7-01 3 195638762 195638762 G C RP11-352G9.1 3'Flank 0.10 TCGA-LN-A5U7-01 3 42687711 42687711 A T NKTR 3'UTR 0.88 TCGA-LN-A5U7-01 3 48624968 48624968 G T COL7A1 Missense_Mutation p.S959R 0.88 unknown(0) TCGA-LN-A5U7-01 3 50098935 50098935 C T RBM6 Silent p.Y798Y 0.38 TCGA-LN-A5U7-01 3 73432059 73432059 C T PDZRN3 3'UTR 0.80 TCGA-LN-A5U7-01 3 86114860 86114860 G A CADM2 Missense_Mutation p.R392Q 0.85 deleterious(0.01) probably_damaging(0.987) TCGA-LN-A5U7-01 4 1369233 1369233 C G UVSSA Missense_Mutation p.P457R 0.34 deleterious(0) probably_damaging(0.998) TCGA-LN-A5U7-01 4 146057331 146057331 G C OTUD4 3'UTR 0.24 TCGA-LN-A5U7-01 4 159560459 159560459 G T RXFP1 Missense_Mutation p.R364I 0.28 deleterious(0.03) benign(0.005) TCGA-LN-A5U7-01 4 186111979 186111979 T C KIAA1430 Silent p.V124V 0.57 TCGA-LN-A5U7-01 4 5743442 5743442 G A EVC Splice_Site p.X235_splice 0.45 TCGA-LN-A5U7-01 4 85594028 85594028 T G WDFY3 Missense_Mutation p.N3525T 0.37 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-LN-A5U7-01 4 88104481 88104481 C T KLHL8 Missense_Mutation p.V276I 0.44 tolerated(0.87) benign(0.001) TCGA-LN-A5U7-01 4 89618288 89618288 G A NAP1L5 3'UTR 0.39 TCGA-LN-A5U7-01 5 108714946 108714946 G C PJA2 Missense_Mutation p.P81R 0.29 deleterious(0.01) possibly_damaging(0.885) TCGA-LN-A5U7-01 5 135518229 135518229 A G SMAD5 3'UTR 0.84 TCGA-LN-A5U7-01 5 140476237 140476237 G A PCDHB2 Silent p.A621A 0.53 TCGA-LN-A5U7-01 5 159821568 159821568 T C C5orf54 Silent p.L310L 0.76 TCGA-LN-A5U7-01 5 178373440 178373440 G C ZNF454 Silent p.L38L 0.35 TCGA-LN-A5U7-01 5 179563528 179563528 G A RASGEF1C Intron 0.24 TCGA-LN-A5U7-01 5 23527075 23527075 C G PRDM9 Missense_Mutation p.H626Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-LN-A5U7-01 5 42719319 42719319 A G GHR Silent p.E570E 0.08 TCGA-LN-A5U7-01 5 64885613 64885613 G T TRIM23 3'UTR 0.33 TCGA-LN-A5U7-01 5 76633130 76633130 T A PDE8B Missense_Mutation p.F263I 0.09 tolerated(0.14) possibly_damaging(0.77) TCGA-LN-A5U7-01 5 89781458 89781458 A G POLR3G Missense_Mutation p.E25G 0.28 tolerated(0.05) probably_damaging(0.914) TCGA-LN-A5U7-01 5 96139172 96139172 C G ERAP1 Missense_Mutation p.G153A 0.45 tolerated(1) benign(0.011) TCGA-LN-A5U7-01 6 110935627 110935627 G T CDK19 3'UTR 0.27 TCGA-LN-A5U7-01 6 122792867 122792867 C G SERINC1 Missense_Mutation p.G6R 0.56 deleterious(0.02) benign(0.275) TCGA-LN-A5U7-01 6 132874111 132874111 G T TAAR8 Nonsense_Mutation p.E94* 0.46 TCGA-LN-A5U7-01 6 132910226 132910226 C A TAAR5 Missense_Mutation p.W200C 0.44 deleterious(0.02) probably_damaging(1) TCGA-LN-A5U7-01 6 24651204 24651204 T C TDP2 Missense_Mutation p.M301V 0.55 tolerated(0.35) benign(0.002) TCGA-LN-A5U7-01 6 26124702 26124702 C A HIST1H2AC Missense_Mutation p.P81Q 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-LN-A5U7-01 6 26252158 26252158 G C HIST1H2BH Missense_Mutation p.E94Q 0.27 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-LN-A5U7-01 6 40312262 40312262 C T LINC00951 RNA 0.90 TCGA-LN-A5U7-01 6 42236020 42236020 C G TRERF1 Missense_Mutation p.A437P 0.21 tolerated_low_confidence(0.25) possibly_damaging(0.665) TCGA-LN-A5U7-01 6 55443889 55443889 A T HMGCLL1 5'UTR 0.08 TCGA-LN-A5U7-01 7 100028402 100028402 C T MEPCE Missense_Mutation p.S254L 0.16 deleterious(0.04) possibly_damaging(0.88) TCGA-LN-A5U7-01 7 100696700 100696700 G A MUC17 Missense_Mutation p.G4449D 0.27 unknown(0) TCGA-LN-A5U7-01 7 11630185 11630185 G A THSD7A Missense_Mutation p.T452M 0.16 deleterious(0.01) probably_damaging(0.978) TCGA-LN-A5U7-01 7 141366131 141366131 A G KIAA1147 Missense_Mutation p.I259T 0.33 deleterious(0) probably_damaging(0.991) TCGA-LN-A5U7-01 7 141619455 141619455 G A OR9A4 Silent p.V260V 0.33 TCGA-LN-A5U7-01 7 150695532 150695532 C T NOS3 Missense_Mutation p.L224F 0.53 deleterious(0) possibly_damaging(0.615) TCGA-LN-A5U7-01 7 21628842 21628842 G A DNAH11 Missense_Mutation p.D664N 0.07 benign(0.258) TCGA-LN-A5U7-01 7 64439388 64439388 A C ZNF117 Missense_Mutation p.H187Q 0.36 deleterious(0.01) probably_damaging(0.959) TCGA-LN-A5U7-01 7 87076347 87076347 T G ABCB4 Intron 0.16 TCGA-LN-A5U7-01 7 97493669 97493669 T C ASNS Missense_Mutation p.N130S 0.52 tolerated(0.46) benign(0.01) TCGA-LN-A5U7-01 7 99917260 99917260 G A SPDYE3 Silent p.K473K 0.19 TCGA-LN-A5U7-01 8 33356668 33356668 C G MAK16 3'UTR 0.53 TCGA-LN-A5U7-01 8 95774026 95774026 C T DPY19L4 Silent p.F278F 0.29 TCGA-LN-A5U7-01 9 100895438 100895438 C T CORO2A Missense_Mutation p.S177N 0.30 tolerated(0.12) benign(0.003) TCGA-LN-A5U7-01 9 131196803 131196803 G A CERCAM Silent p.A482A 0.18 TCGA-LN-A5U7-01 9 139753531 139753531 C T MAMDC4 Missense_Mutation p.R1011W 0.40 deleterious(0.02) probably_damaging(0.972) TCGA-LN-A5U7-01 9 43628646 43628646 G T SPATA31A6 Nonsense_Mutation p.S99* 0.31 TCGA-LN-A5U7-01 9 74970277 74970277 G C ZFAND5 3'UTR 0.23 TCGA-LN-A5U7-01 9 74970520 74970520 G T ZFAND5 3'UTR 0.29 TCGA-LN-A5U7-01 X 118718122 118718122 T C UBE2A 3'UTR 0.89 TCGA-LN-A5U7-01 X 127185461 127185461 C G ACTRT1 Missense_Mutation p.R242T 0.39 tolerated(0.13) benign(0.039) TCGA-LN-A5U7-01 X 138864830 138864830 T C ATP11C Missense_Mutation p.R613G 0.85 tolerated(0.4) benign(0.065) TCGA-LN-A5U7-01 X 155007365 155007365 G T SPRY3 3'UTR 0.28 TCGA-LN-A5U7-01 X 2861176 2861176 C T ARSE Silent p.S352S 0.74 TCGA-LN-A5U7-01 X 49857291 49857291 T C CLCN5 3'UTR 0.81 TCGA-LN-A5U7-01 X 91642780 91642780 G A PCDH11X Missense_Mutation p.S1064N 0.54 tolerated(0.14) probably_damaging(0.995) TCGA-LN-A7HV-01 10 118689440 118689440 T A KIAA1598 Missense_Mutation p.E311V 0.09 deleterious(0) possibly_damaging(0.872) TCGA-LN-A7HV-01 10 32101634 32101634 C A ARHGAP12 Splice_Site p.X651_splice 0.30 TCGA-LN-A7HV-01 10 51586352 51586352 T C NCOA4 Missense_Mutation p.F610L 0.29 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HV-01 10 88635670 88635670 C A BMPR1A 5'UTR 0.35 TCGA-LN-A7HV-01 10 89653835 89653835 G - PTEN Frame_Shift_Del p.V45Yfs*9 0.29 TCGA-LN-A7HV-01 11 114577407 114577407 C G NXPE2 Missense_Mutation p.R479G 0.05 deleterious(0) probably_damaging(0.97) TCGA-LN-A7HV-01 11 118375390 118375390 T A KMT2A Missense_Mutation p.L2928Q 0.53 probably_damaging(0.991) TCGA-LN-A7HV-01 11 13749173 13749173 A T FAR1 Missense_Mutation p.K443M 0.51 tolerated(0.06) probably_damaging(0.922) TCGA-LN-A7HV-01 11 22387154 22387154 G A SLC17A6 Silent p.K270K 0.35 TCGA-LN-A7HV-01 11 2869032 2869032 C A KCNQ1 Silent p.T610T 0.22 TCGA-LN-A7HV-01 11 3845137 3845137 A G PGAP2 Missense_Mutation p.S125G 0.27 deleterious(0.01) possibly_damaging(0.766) TCGA-LN-A7HV-01 11 57982300 57982300 G T OR1S1 Silent p.L28L 0.24 TCGA-LN-A7HV-01 11 74324010 74324010 A G POLD3 Missense_Mutation p.N116S 0.25 tolerated(0.34) benign(0.093) TCGA-LN-A7HV-01 11 76508883 76508883 T A TSKU 3'UTR 0.37 TCGA-LN-A7HV-01 11 9534025 9534025 A G ZNF143 Missense_Mutation p.Q469R 0.34 tolerated(0.56) benign(0.012) TCGA-LN-A7HV-01 12 108686629 108686629 C A CMKLR1 Missense_Mutation p.R37S 0.16 tolerated(0.72) benign(0.007) TCGA-LN-A7HV-01 12 11214379 11214379 A G TAS2R46 Missense_Mutation p.M172T 0.49 tolerated(0.47) benign(0.002) TCGA-LN-A7HV-01 12 113534587 113534587 C T DTX1 Missense_Mutation p.T569M 0.39 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HV-01 12 12796243 12796243 A G CREBL2 3'UTR 0.32 TCGA-LN-A7HV-01 12 18552628 18552628 A G PIK3C2G Missense_Mutation p.Y680C 0.29 tolerated(0.1) probably_damaging(0.971) TCGA-LN-A7HV-01 12 51458091 51458091 C A CSRNP2 Missense_Mutation p.G357V 0.18 deleterious(0) probably_damaging(0.967) TCGA-LN-A7HV-01 12 53690058 53690058 C T PFDN5 Missense_Mutation p.S69F 0.27 deleterious(0) probably_damaging(0.988) TCGA-LN-A7HV-01 14 24769638 24769638 A G NOP9 Missense_Mutation p.K91R 0.45 tolerated(0.18) possibly_damaging(0.723) TCGA-LN-A7HV-01 14 65007517 65007517 A G HSPA2 5'UTR 0.35 TCGA-LN-A7HV-01 15 63116186 63116186 T G TLN2 Intron 0.31 TCGA-LN-A7HV-01 15 65681218 65681218 C T IGDCC4 Missense_Mutation p.V879M 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-LN-A7HV-01 15 69079862 69079862 C T ANP32A Missense_Mutation p.D73N 0.04 deleterious(0.04) benign(0.04) TCGA-LN-A7HV-01 15 72192087 72192087 T C MYO9A Silent p.E1137E 0.32 TCGA-LN-A7HV-01 15 88419991 88419991 T C NTRK3 3'Flank 0.14 TCGA-LN-A7HV-01 16 22128487 22128487 C A VWA3A Missense_Mutation p.P327Q 0.36 deleterious(0) possibly_damaging(0.52) TCGA-LN-A7HV-01 16 2303349 2303353 TGACT ATGACC RNPS1 3'UTR 0.47 TCGA-LN-A7HV-01 16 30720962 30720962 A G SRCAP Silent p.P254P 0.33 TCGA-LN-A7HV-01 16 4016561 4016561 C A ADCY9 Missense_Mutation p.D1093Y 0.24 deleterious(0) probably_damaging(1) TCGA-LN-A7HV-01 17 15878317 15878317 C G ADORA2B Missense_Mutation p.D220E 0.50 tolerated(1) benign(0.01) TCGA-LN-A7HV-01 17 2266426 2266426 G A SGSM2 Missense_Mutation p.G224R 0.30 tolerated(0.34) possibly_damaging(0.743) TCGA-LN-A7HV-01 17 26729266 26729266 C G SLC46A1 Missense_Mutation p.E385D 0.68 tolerated(0.34) benign(0.122) TCGA-LN-A7HV-01 17 26901517 26901517 C G ALDOC Missense_Mutation p.E207Q 0.06 deleterious(0.03) possibly_damaging(0.552) TCGA-LN-A7HV-01 17 28783319 28783319 A G CPD Missense_Mutation p.N1128S 0.80 tolerated(0.81) benign(0.07) TCGA-LN-A7HV-01 17 38151522 38151522 G A PSMD3 Missense_Mutation p.R397Q 0.25 deleterious(0) probably_damaging(0.931) TCGA-LN-A7HV-01 17 39659228 39659228 C T KRT13 Silent p.E286E 0.07 TCGA-LN-A7HV-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.33 deleterious(0.01) probably_damaging(1) TCGA-LN-A7HV-01 17 76027743 76027743 C G TNRC6C 5'UTR 0.19 TCGA-LN-A7HV-01 17 76967577 76967577 G C LGALS3BP 3'UTR 0.68 TCGA-LN-A7HV-01 17 80790213 80790213 G - ZNF750 Frame_Shift_Del p.L40Ffs*5 0.37 TCGA-LN-A7HV-01 18 11753862 11753862 T C GNAL Missense_Mutation p.V181A 0.09 tolerated(0.15) possibly_damaging(0.569) TCGA-LN-A7HV-01 18 14852215 14852215 A G ANKRD30B Silent p.Q1305Q 0.25 TCGA-LN-A7HV-01 18 29126669 29126669 T C DSG2 Missense_Mutation p.V1107A 0.37 deleterious(0) possibly_damaging(0.64) TCGA-LN-A7HV-01 18 46476341 46476341 A G SMAD7 Missense_Mutation p.S152P 0.22 tolerated_low_confidence(0.29) benign(0.004) TCGA-LN-A7HV-01 18 52937190 52937190 T C TCF4 Missense_Mutation p.Y367C 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-LN-A7HV-01 18 56411668 56411668 A G MALT1 Missense_Mutation p.I618V 0.31 tolerated(0.3) benign(0.002) TCGA-LN-A7HV-01 18 63525173 63525173 C T CDH7 Missense_Mutation p.L453F 0.28 tolerated(0.18) benign(0.098) TCGA-LN-A7HV-01 18 76886355 76886355 A G ATP9B Missense_Mutation p.Y216C 0.30 deleterious(0.01) possibly_damaging(0.802) TCGA-LN-A7HV-01 19 11222262 11222262 A G LDLR Missense_Mutation p.Q378R 0.14 deleterious(0.01) benign(0.132) TCGA-LN-A7HV-01 19 1220644 1220644 C T STK11 Missense_Mutation p.P221L 0.36 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HV-01 19 13869945 13869945 C T CCDC130 Silent p.D144D 0.35 TCGA-LN-A7HV-01 19 1785628 1785628 A G ATP8B3 Missense_Mutation p.V1078A 0.41 tolerated(0.62) possibly_damaging(0.593) TCGA-LN-A7HV-01 19 41216000 41216000 C A ADCK4 Missense_Mutation p.A111S 0.30 tolerated(0.06) benign(0.297) TCGA-LN-A7HV-01 19 48386900 48386900 T C SULT2A1 Silent p.P93P 0.06 TCGA-LN-A7HV-01 19 57932633 57932633 T A ZNF17 Missense_Mutation p.F591L 0.34 deleterious(0.02) benign(0.037) TCGA-LN-A7HV-01 19 58904399 58904399 G T RPS5 Silent p.R55R 0.17 TCGA-LN-A7HV-01 19 7742575 7742575 C G C19orf59 Missense_Mutation p.D49E 0.06 tolerated(0.21) possibly_damaging(0.866) TCGA-LN-A7HV-01 19 8550661 8550661 T G HNRNPM Missense_Mutation p.M450R 0.33 tolerated(0.1) benign(0.001) TCGA-LN-A7HV-01 19 9721697 9721697 T A ZNF561 Missense_Mutation p.N214Y 0.36 tolerated(0.07) probably_damaging(0.999) TCGA-LN-A7HV-01 1 100174461 100174461 C A FRRS1 Missense_Mutation p.C625F 0.33 deleterious_low_confidence(0) benign(0.106) TCGA-LN-A7HV-01 1 115168298 115168298 T G DENND2C Missense_Mutation p.D103A 0.31 tolerated(0.59) benign(0.01) TCGA-LN-A7HV-01 1 156821495 156821495 C A INSRR Missense_Mutation p.D343Y 0.11 deleterious(0.01) possibly_damaging(0.502) TCGA-LN-A7HV-01 1 158549594 158549594 G C OR10X1 Silent p.G32G 0.23 TCGA-LN-A7HV-01 1 16053914 16053914 G A PLEKHM2 Silent p.P449P 0.53 TCGA-LN-A7HV-01 1 167666533 167666533 G A RCSD1 Silent p.A224A 0.27 TCGA-LN-A7HV-01 1 175067617 175067617 G A TNN Missense_Mutation p.E669K 0.29 deleterious(0.02) benign(0.41) TCGA-LN-A7HV-01 1 201292259 201292259 A G PKP1 Missense_Mutation p.D562G 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-LN-A7HV-01 1 235612062 235612062 A G TBCE Silent p.L523L 0.27 TCGA-LN-A7HV-01 1 248059198 248059198 T C OR2W3 Missense_Mutation p.F104L 0.12 tolerated(0.12) benign(0.354) TCGA-LN-A7HV-01 1 33585965 33585965 C A ADC 3'UTR 0.12 TCGA-LN-A7HV-01 1 39330042 39330042 A G MYCBP 3'UTR 0.15 TCGA-LN-A7HV-01 1 39797646 39797646 G A MACF1 Intron 0.48 TCGA-LN-A7HV-01 1 40147797 40147797 G C HPCAL4 3'UTR 0.56 TCGA-LN-A7HV-01 1 46073188 46073188 C G NASP Missense_Mutation p.T202S 0.52 tolerated_low_confidence(0.07) benign(0.219) TCGA-LN-A7HV-01 1 55315495 55315495 C T DHCR24 3'UTR 0.32 TCGA-LN-A7HV-01 1 87538711 87538711 C T HS2ST1 Silent p.D73D 0.11 TCGA-LN-A7HV-01 20 32247407 32247407 G C NECAB3 Missense_Mutation p.P259A 0.30 tolerated(0.22) benign(0) TCGA-LN-A7HV-01 20 43938331 43938331 C T RBPJL Missense_Mutation p.R86W 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A7HV-01 20 44433804 44433804 A G DNTTIP1 Missense_Mutation p.N208S 0.31 tolerated(0.41) benign(0.008) TCGA-LN-A7HV-01 21 30302439 30302439 T G LTN1 3'UTR 0.13 TCGA-LN-A7HV-01 21 44513084 44513084 T C U2AF1 3'UTR 0.28 TCGA-LN-A7HV-01 22 40722824 40722824 A G TNRC6B 3'UTR 0.24 TCGA-LN-A7HV-01 22 50717349 50717349 A - PLXNB2 Frame_Shift_Del p.I1494Tfs*38 0.15 TCGA-LN-A7HV-01 22 51065088 51065088 G T ARSA Missense_Mutation p.T262N 0.39 tolerated(0.45) benign(0.001) TCGA-LN-A7HV-01 2 109124022 109124022 A G GCC2 Missense_Mutation p.E1664G 0.03 deleterious(0) possibly_damaging(0.522) TCGA-LN-A7HV-01 2 113670654 113670654 C T IL37 Missense_Mutation p.P22L 0.27 tolerated(0.29) benign(0.012) TCGA-LN-A7HV-01 2 119739003 119739003 G A MARCO Missense_Mutation p.G262D 0.40 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HV-01 2 198572530 198572530 A T MARS2 3'UTR 0.40 TCGA-LN-A7HV-01 2 238259800 238259800 T A COL6A3 Silent p.R2263R 0.10 TCGA-LN-A7HV-01 2 31483423 31483423 C T EHD3 Missense_Mutation p.R184C 0.26 deleterious(0.01) possibly_damaging(0.605) TCGA-LN-A7HV-01 2 42557121 42557121 A G EML4 Missense_Mutation p.N907S 0.21 tolerated_low_confidence(0.66) benign(0.001) TCGA-LN-A7HV-01 3 124451286 124451286 G A UMPS Intron 0.22 TCGA-LN-A7HV-01 3 130293213 130293213 G A COL6A6 Missense_Mutation p.D1131N 0.08 tolerated(0.98) benign(0.021) TCGA-LN-A7HV-01 3 155571332 155571332 C G SLC33A1 Missense_Mutation p.G152A 0.17 deleterious(0.04) probably_damaging(0.923) TCGA-LN-A7HV-01 3 169496700 169496700 A G MYNN Silent p.E137E 0.21 TCGA-LN-A7HV-01 3 17416137 17416137 G A TBC1D5 Silent p.L246L 0.06 TCGA-LN-A7HV-01 3 183638532 183638532 C T ABCC5 3'UTR 0.18 TCGA-LN-A7HV-01 3 185639916 185639916 T C TRA2B Splice_Site p.X175_splice 0.28 TCGA-LN-A7HV-01 3 195512519 195512519 A G MUC4 Missense_Mutation p.S1978P 0.04 unknown(0) TCGA-LN-A7HV-01 3 42244124 42244124 G A TRAK1 Missense_Mutation p.E542K 0.07 deleterious(0.03) possibly_damaging(0.626) TCGA-LN-A7HV-01 3 48508870 48508870 T C TREX1 Silent p.D327D 0.35 TCGA-LN-A7HV-01 4 151935949 151935949 G A LRBA 5'UTR 0.15 TCGA-LN-A7HV-01 4 169279318 169279318 T A DDX60L Missense_Mutation p.S1701C 0.08 tolerated_low_confidence(0.19) benign(0) TCGA-LN-A7HV-01 4 39306472 39306472 T A RFC1 Missense_Mutation p.E692V 0.25 deleterious(0) probably_damaging(0.978) TCGA-LN-A7HV-01 4 42965026 42965026 G T GRXCR1 Missense_Mutation p.V168L 0.25 deleterious(0.01) possibly_damaging(0.489) TCGA-LN-A7HV-01 4 48597637 48597637 T C FRYL Missense_Mutation p.I406M 0.11 deleterious(0) probably_damaging(0.995) TCGA-LN-A7HV-01 4 68544176 68544176 C A UBA6 Missense_Mutation p.V112F 0.31 deleterious(0) benign(0.398) TCGA-LN-A7HV-01 5 112862420 112862420 A G YTHDC2 Missense_Mutation p.I205V 0.42 tolerated(1) benign(0.05) TCGA-LN-A7HV-01 5 118604488 118604488 C T TNFAIP8 5'UTR 0.56 TCGA-LN-A7HV-01 5 132585213 132585213 G A FSTL4 Silent p.T261T 0.21 TCGA-LN-A7HV-01 5 159821723 159821723 C T C5orf54 Missense_Mutation p.V259M 0.41 tolerated(0.12) benign(0.01) TCGA-LN-A7HV-01 5 98223851 98223851 T C CHD1 Missense_Mutation p.M813V 0.48 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HV-01 6 106967345 106967345 C G AIM1 Silent p.T346T 0.18 TCGA-LN-A7HV-01 6 12161991 12161991 G A HIVEP1 Silent p.R2269R 0.36 TCGA-LN-A7HV-01 6 123892175 123892175 G A TRDN Missense_Mutation p.T42M 0.47 deleterious_low_confidence(0) unknown(0) TCGA-LN-A7HV-01 6 170627759 170627759 G T FAM120B Missense_Mutation p.M427I 0.48 tolerated_low_confidence(0.1) benign(0.003) TCGA-LN-A7HV-01 6 27368437 27368437 A C ZNF391 Missense_Mutation p.L96F 0.23 tolerated(0.08) benign(0.004) TCGA-LN-A7HV-01 6 34730402 34730402 A T SNRPC Missense_Mutation p.R28W 0.22 deleterious(0.01) possibly_damaging(0.733) TCGA-LN-A7HV-01 6 50815251 50815251 A G TFAP2B 3'UTR 0.37 TCGA-LN-A7HV-01 6 56504082 56504082 T C DST Missense_Mutation p.N443S 0.29 benign(0.023) TCGA-LN-A7HV-01 7 100684551 100684551 G C MUC17 Missense_Mutation p.S3285T 0.11 possibly_damaging(0.777) TCGA-LN-A7HV-01 7 102087506 102087506 G A ORAI2 3'UTR 0.45 TCGA-LN-A7HV-01 7 142099897 142099897 T G TRBV7-8 Silent p.L14L 0.19 TCGA-LN-A7HV-01 7 143747992 143747992 G T OR2A5 Silent p.L166L 0.28 TCGA-LN-A7HV-01 7 152012301 152012301 T C KMT2C Missense_Mutation p.K171R 0.33 benign(0.008) TCGA-LN-A7HV-01 7 45143810 45143830 GTGGCCAGGCGCTGGGACACC - TBRG4 In_Frame_Del p.Q311_T318delinsH 0.29 TCGA-LN-A7HV-01 7 70853300 70853300 A T WBSCR17 Missense_Mutation p.I168F 0.24 deleterious(0.01) possibly_damaging(0.825) TCGA-LN-A7HV-01 7 84694822 84694822 A G SEMA3D Silent p.D212D 0.22 TCGA-LN-A7HV-01 7 97875460 97875460 G A TECPR1 5'UTR 0.06 TCGA-LN-A7HV-01 8 106811047 106811047 G A ZFPM2 Missense_Mutation p.E279K 0.18 deleterious(0.04) benign(0.113) TCGA-LN-A7HV-01 8 11152762 11152762 T G MTMR9 Missense_Mutation p.L81W 0.11 deleterious(0) probably_damaging(0.995) TCGA-LN-A7HV-01 8 17731947 17731947 C A FGL1 Missense_Mutation p.V110F 0.36 deleterious(0) probably_damaging(0.969) TCGA-LN-A7HV-01 8 23699683 23699683 A G STC1 3'UTR 0.25 TCGA-LN-A7HV-01 8 25261196 25261196 T A DOCK5 Silent p.S1683S 0.26 TCGA-LN-A7HV-01 9 107298655 107298655 A T OR13C3 Missense_Mutation p.M147K 0.62 deleterious(0) benign(0.15) TCGA-LN-A7HV-01 9 112219585 112219585 G A PTPN3 Missense_Mutation p.S78F 0.09 deleterious(0.01) possibly_damaging(0.701) TCGA-LN-A7HV-01 9 133269131 133269133 CCC - AL354898.1 5'Flank 0.35 TCGA-LN-A7HV-01 9 23690150 23690150 A G ELAVL2 3'UTR 0.57 TCGA-LN-A7HV-01 9 465079 465079 G T DOCK8 3'UTR 0.48 TCGA-LN-A7HV-01 X 134715018 134715018 T A DDX26B Silent p.P809P 0.59 TCGA-LN-A7HV-01 X 23397967 23397967 A G PTCHD1 Missense_Mutation p.K204R 0.53 tolerated(0.56) benign(0.005) TCGA-LN-A7HW-01 10 104176706 104176706 C T PSD Silent p.P30P 0.12 TCGA-LN-A7HW-01 10 114063043 114063043 G A TECTB Missense_Mutation p.M321I 0.56 tolerated_low_confidence(0.18) benign(0) TCGA-LN-A7HW-01 10 116621445 116621445 G C FAM160B1 3'UTR 0.67 TCGA-LN-A7HW-01 10 26880236 26880236 C G LINC00264 Intron 0.30 TCGA-LN-A7HW-01 10 43326619 43326619 G T BMS1 3'UTR 0.70 TCGA-LN-A7HW-01 10 70700818 70700818 G A DDX50 Silent p.G586G 0.61 TCGA-LN-A7HW-01 11 12316029 12316029 C T MICALCL Missense_Mutation p.R351W 0.64 deleterious(0) probably_damaging(0.981) TCGA-LN-A7HW-01 11 22399782 22399782 C T SLC17A6 3'UTR 0.68 TCGA-LN-A7HW-01 11 47727462 47727462 G C AGBL2 Missense_Mutation p.I80M 0.32 tolerated_low_confidence(0.2) benign(0.045) TCGA-LN-A7HW-01 11 49829204 49829204 C G RP11-707M1.1 Intron 0.36 TCGA-LN-A7HW-01 11 57564314 57564314 G C CTNND1 Missense_Mutation p.S269T 0.46 tolerated(0.44) benign(0.028) TCGA-LN-A7HW-01 11 62327763 62327763 G C EEF1G Missense_Mutation p.L341V 0.15 deleterious(0) possibly_damaging(0.848) TCGA-LN-A7HW-01 11 63978612 63978612 C G FERMT3 Silent p.L161L 0.14 TCGA-LN-A7HW-01 11 64108393 64108393 G A CCDC88B Missense_Mutation p.R74Q 0.49 tolerated(0.16) benign(0.23) TCGA-LN-A7HW-01 11 64695604 64695604 T C PPP2R5B Missense_Mutation p.Y189H 0.50 tolerated(0.07) possibly_damaging(0.66) TCGA-LN-A7HW-01 11 65417519 65417519 G A SIPA1 Missense_Mutation p.E949K 0.24 deleterious(0) benign(0.309) TCGA-LN-A7HW-01 11 65417876 65417876 G C SIPA1 Missense_Mutation p.E970Q 0.22 tolerated(0.19) benign(0.003) TCGA-LN-A7HW-01 11 65793409 65793409 G C CATSPER1 Missense_Mutation p.H148D 0.38 tolerated(0.15) benign(0.351) TCGA-LN-A7HW-01 11 71806129 71806129 G C LRTOMT Missense_Mutation p.K7N 0.17 tolerated_low_confidence(0.11) benign(0.005) TCGA-LN-A7HW-01 11 74800003 74800003 G T OR2AT4 Silent p.V252V 0.28 TCGA-LN-A7HW-01 11 8190574 8190574 G A RIC3 5'Flank 0.69 TCGA-LN-A7HW-01 11 94609168 94609168 G C AMOTL1 3'UTR 0.12 TCGA-LN-A7HW-01 12 112123540 112123540 G A BRAP Silent p.P19P 0.41 TCGA-LN-A7HW-01 12 57003984 57003984 C T BAZ2A Missense_Mutation p.V601M 0.69 tolerated(0.15) probably_damaging(0.999) TCGA-LN-A7HW-01 12 6909240 6909240 C G CD4 Intron 0.56 TCGA-LN-A7HW-01 12 72057336 72057336 C T ZFC3H1 Missense_Mutation p.E19K 0.54 deleterious_low_confidence(0.01) benign(0.292) TCGA-LN-A7HW-01 13 38166244 38166244 G C POSTN Missense_Mutation p.C92W 0.31 deleterious(0) probably_damaging(0.927) TCGA-LN-A7HW-01 13 73333933 73333933 C A DIS3 Nonstop_Mutation p.*959Yext*14 0.43 TCGA-LN-A7HW-01 14 23779833 23779833 G T BCL2L2 3'UTR 0.60 TCGA-LN-A7HW-01 14 24771499 24771499 G A NOP9 Missense_Mutation p.V338M 0.46 deleterious(0.01) probably_damaging(0.985) TCGA-LN-A7HW-01 14 56233183 56233183 C A RP11-813I20.2 Intron 0.11 TCGA-LN-A7HW-01 14 57877794 57877794 A T NAA30 3'UTR 0.07 TCGA-LN-A7HW-01 14 74179414 74179414 A T PNMA1 Missense_Mutation p.L310H 0.57 deleterious(0) probably_damaging(0.992) TCGA-LN-A7HW-01 14 92470509 92470509 T A TRIP11 Missense_Mutation p.I1271F 0.32 deleterious(0.04) probably_damaging(0.988) TCGA-LN-A7HW-01 14 94004395 94004395 C A UNC79 Missense_Mutation p.R218S 0.17 tolerated(0.37) probably_damaging(0.997) TCGA-LN-A7HW-01 15 102297905 102297905 C T DNM1P47 RNA 0.68 TCGA-LN-A7HW-01 15 45444575 45444575 C T DUOX1 Silent p.F1095F 0.44 TCGA-LN-A7HW-01 15 54920744 54920744 T G UNC13C 3'UTR 0.31 TCGA-LN-A7HW-01 16 2160143 2160143 G A PKD1 Silent p.A1675A 0.59 TCGA-LN-A7HW-01 16 30594220 30594220 G A ZNF785 Silent p.F293F 0.08 TCGA-LN-A7HW-01 16 30903911 30903911 C T BCL7C Silent p.E146E 0.21 TCGA-LN-A7HW-01 16 67672084 67672084 T G CTCF 3'UTR 0.30 TCGA-LN-A7HW-01 16 68265264 68265264 C T ESRP2 Missense_Mutation p.D510N 0.44 deleterious(0.03) probably_damaging(0.996) TCGA-LN-A7HW-01 16 71885915 71885915 G C ATXN1L 3'UTR 0.26 TCGA-LN-A7HW-01 16 71889948 71889948 G T ATXN1L 3'UTR 0.31 TCGA-LN-A7HW-01 17 10728609 10728609 C T PIRT Silent p.Q118Q 0.33 TCGA-LN-A7HW-01 17 11660984 11660984 A C DNAH9 Missense_Mutation p.T2324P 0.29 benign(0.001) TCGA-LN-A7HW-01 17 41477058 41477058 A C ARL4D 5'UTR 0.26 TCGA-LN-A7HW-01 17 56432282 56432282 G C RNF43 3'UTR 0.33 TCGA-LN-A7HW-01 17 57351335 57351335 G A GDPD1 3'UTR 0.26 TCGA-LN-A7HW-01 17 58024338 58024338 G A RPS6KB1 3'UTR 0.23 TCGA-LN-A7HW-01 17 73240711 73240711 C T GGA3 Missense_Mutation p.V97I 0.64 tolerated(0.1) possibly_damaging(0.714) TCGA-LN-A7HW-01 17 7578266 7578266 T A TP53 Missense_Mutation p.I195F 0.83 deleterious(0) probably_damaging(1) TCGA-LN-A7HW-01 18 24513645 24513645 T A CHST9 Intron 0.28 TCGA-LN-A7HW-01 18 31326180 31326180 C G ASXL3 Missense_Mutation p.S2123C 0.30 probably_damaging(0.998) TCGA-LN-A7HW-01 18 50923684 50923684 G A DCC Missense_Mutation p.D899N 0.20 tolerated(1) benign(0.016) TCGA-LN-A7HW-01 19 12223836 12223836 C A ZNF788 Missense_Mutation p.H492N 0.05 deleterious(0) probably_damaging(0.913) TCGA-LN-A7HW-01 19 14070617 14070617 C T DCAF15 Silent p.F450F 0.45 TCGA-LN-A7HW-01 19 15357913 15357913 T C BRD4 Intron 0.37 TCGA-LN-A7HW-01 19 17373483 17373483 C A USHBP1 Missense_Mutation p.A174S 0.11 deleterious(0.05) possibly_damaging(0.452) TCGA-LN-A7HW-01 19 33609992 33609992 C T GPATCH1 Silent p.F830F 0.36 TCGA-LN-A7HW-01 19 41111350 41111350 A G LTBP4 Missense_Mutation p.Q228R 0.35 deleterious(0.03) possibly_damaging(0.899) TCGA-LN-A7HW-01 19 44096738 44096738 C T IRGQ Missense_Mutation p.G438R 0.33 deleterious(0.01) probably_damaging(1) TCGA-LN-A7HW-01 19 46443970 46443970 G C NOVA2 Silent p.L210L 0.32 TCGA-LN-A7HW-01 19 47197277 47197277 G A PRKD2 Silent p.F477F 0.45 TCGA-LN-A7HW-01 19 50985908 50985908 C G EMC10 3'UTR 0.49 TCGA-LN-A7HW-01 19 51330300 51330300 G A KLK15 Silent p.N105N 0.34 TCGA-LN-A7HW-01 19 51983739 51983739 G A CEACAM18 Missense_Mutation p.A130T 0.34 tolerated(0.58) benign(0.035) TCGA-LN-A7HW-01 1 103342606 103342606 C G COL11A1 3'UTR 0.53 TCGA-LN-A7HW-01 1 146398500 146398500 C T NBPF12 Silent p.L162L 0.38 TCGA-LN-A7HW-01 1 160389226 160389226 G A VANGL2 Silent p.E209E 0.27 TCGA-LN-A7HW-01 1 182568892 182568892 C T RGS16 3'UTR 0.54 TCGA-LN-A7HW-01 1 182615830 182615830 A - RGS8 3'UTR 0.22 TCGA-LN-A7HW-01 1 202245493 202245493 C T LGR6 Missense_Mutation p.S163F 0.27 tolerated(0.06) probably_damaging(0.981) TCGA-LN-A7HW-01 1 207222508 207222510 CTG - YOD1 In_Frame_Del p.A301del 0.54 TCGA-LN-A7HW-01 1 215987082 215987082 T C USH2A Silent p.L3245L 0.31 TCGA-LN-A7HW-01 1 225682660 225682660 A C ENAH 3'UTR 0.43 TCGA-LN-A7HW-01 1 240072316 240072316 C G CHRM3 Missense_Mutation p.P522R 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-LN-A7HW-01 1 59004813 59004813 C A OMA1 Nonsense_Mutation p.G52* 0.76 TCGA-LN-A7HW-01 1 89250469 89250469 G A PKN2 Missense_Mutation p.G378E 0.10 tolerated(0.12) benign(0.027) TCGA-LN-A7HW-01 20 31584143 31584143 G A SUN5 Silent p.L138L 0.46 TCGA-LN-A7HW-01 20 32264556 32264556 G A E2F1 Silent p.L432L 0.42 TCGA-LN-A7HW-01 20 32264679 32264679 G C E2F1 Missense_Mutation p.F391L 0.48 tolerated(0.28) benign(0.042) TCGA-LN-A7HW-01 20 32307929 32307929 C T PXMP4 Missense_Mutation p.V29M 0.36 tolerated(0.3) benign(0.045) TCGA-LN-A7HW-01 20 44054363 44054363 A G PIGT Missense_Mutation p.N545S 0.38 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HW-01 20 44515296 44515296 G C SPATA25 Missense_Mutation p.Q182E 0.45 deleterious_low_confidence(0.02) probably_damaging(0.987) TCGA-LN-A7HW-01 20 60775767 60775767 C A MTG2 Silent p.G285G 0.48 TCGA-LN-A7HW-01 21 31988818 31988818 G T KRTAP20-1 Silent p.G15G 0.66 TCGA-LN-A7HW-01 21 34922690 34922690 G T SON Missense_Mutation p.G385W 0.65 probably_damaging(0.965) TCGA-LN-A7HW-01 21 35257404 35257404 A G ITSN1 Missense_Mutation p.K1579R 0.06 tolerated(0.09) benign(0.019) TCGA-LN-A7HW-01 22 20307414 20307414 T C DGCR6L Missense_Mutation p.K33R 0.47 tolerated(0.43) benign(0.04) TCGA-LN-A7HW-01 22 27026481 27026481 G A CRYBA4 3'UTR 0.24 TCGA-LN-A7HW-01 22 35948086 35948086 G A RASD2 3'UTR 0.40 TCGA-LN-A7HW-01 22 41576061 41576061 A G EP300 3'UTR 0.34 TCGA-LN-A7HW-01 22 44372658 44372658 C G SAMM50 Missense_Mutation p.S269C 0.41 deleterious(0.04) benign(0.159) TCGA-LN-A7HW-01 2 103414392 103414392 C G TMEM182 Missense_Mutation p.I134M 0.40 tolerated(0.08) probably_damaging(0.98) TCGA-LN-A7HW-01 2 11332666 11332666 G A ROCK2 Missense_Mutation p.P1287L 0.40 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HW-01 2 141093318 141093318 G T LRP1B Missense_Mutation p.F3994L 0.41 benign(0.153) TCGA-LN-A7HW-01 2 166900237 166900237 G A SCN1A Missense_Mutation p.S662L 0.49 tolerated(0.3) benign(0.025) TCGA-LN-A7HW-01 2 169850332 169850332 C T ABCB11 Missense_Mutation p.M224I 0.48 tolerated(0.61) benign(0.002) TCGA-LN-A7HW-01 2 178098953 178098953 C G NFE2L2 Missense_Mutation p.G31A 0.48 deleterious(0.02) benign(0.318) TCGA-LN-A7HW-01 2 180409561 180409561 A T ZNF385B Missense_Mutation p.F130Y 0.26 deleterious(0) probably_damaging(0.995) TCGA-LN-A7HW-01 2 38796385 38796385 T A HNRNPLL Missense_Mutation p.N431Y 0.40 deleterious(0) probably_damaging(1) TCGA-LN-A7HW-01 2 46587838 46587838 G A EPAS1 Missense_Mutation p.M172I 0.31 deleterious(0) benign(0.052) TCGA-LN-A7HW-01 2 74531762 74531762 T A SLC4A5 Missense_Mutation p.Q42L 0.35 deleterious_low_confidence(0.01) benign(0.021) TCGA-LN-A7HW-01 2 97355040 97355040 C T FER1L5 RNA 0.38 TCGA-LN-A7HW-01 2 97749938 97749938 G A FAHD2B Silent p.F254F 0.33 TCGA-LN-A7HW-01 3 109046719 109046719 C T DPPA4 3'UTR 0.19 TCGA-LN-A7HW-01 3 113379264 113379264 C A KIAA2018 Missense_Mutation p.R422L 0.60 probably_damaging(0.998) TCGA-LN-A7HW-01 3 138669212 138669212 C T C3orf72 Missense_Mutation p.S109L 0.66 deleterious_low_confidence(0.02) possibly_damaging(0.776) TCGA-LN-A7HW-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.39 deleterious(0.02) probably_damaging(0.959) TCGA-LN-A7HW-01 3 189612899 189612899 C A TP63 3'UTR 0.22 TCGA-LN-A7HW-01 3 32495940 32495940 C G CMTM7 3'UTR 0.53 TCGA-LN-A7HW-01 3 38437017 38437017 C T XYLB Missense_Mutation p.A438V 0.07 tolerated(0.13) benign(0.173) TCGA-LN-A7HW-01 3 42243925 42243925 C T TRAK1 Intron 0.60 TCGA-LN-A7HW-01 3 49700504 49700504 G A BSN Missense_Mutation p.R3638H 0.49 unknown(0) TCGA-LN-A7HW-01 4 52926601 52926601 A G SPATA18 Missense_Mutation p.Q35R 0.56 deleterious(0) possibly_damaging(0.888) TCGA-LN-A7HW-01 4 667962 667962 G T MYL5 5'Flank 0.64 TCGA-LN-A7HW-01 5 233760 233760 G A SDHA Missense_Mutation p.R355K 0.59 deleterious_low_confidence(0) probably_damaging(1) TCGA-LN-A7HW-01 5 24509822 24509822 A G CDH10 Missense_Mutation p.I370T 0.19 tolerated(1) benign(0.001) TCGA-LN-A7HW-01 5 34918517 34918517 A T BRIX1 Missense_Mutation p.I70L 0.65 deleterious(0.03) possibly_damaging(0.612) TCGA-LN-A7HW-01 6 12164527 12164527 C T HIVEP1 Silent p.L2664L 0.27 TCGA-LN-A7HW-01 6 22287656 22287656 C T PRL Missense_Mutation p.R220Q 0.37 tolerated(0.16) possibly_damaging(0.523) TCGA-LN-A7HW-01 6 26271357 26271357 G A HIST1H3G Nonsense_Mutation p.Q86* 0.40 TCGA-LN-A7HW-01 6 36462204 36462204 C G STK38 3'UTR 0.38 TCGA-LN-A7HW-01 6 407912 407912 G A IRF4 3'UTR 0.38 TCGA-LN-A7HW-01 6 76591508 76591508 C G MYO6 Missense_Mutation p.Q797E 0.43 deleterious(0.02) unknown(0) TCGA-LN-A7HW-01 6 84872950 84872950 T G KIAA1009 Missense_Mutation p.K809Q 0.09 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HW-01 7 131908323 131908323 G A PLXNA4 Missense_Mutation p.T687I 0.44 deleterious(0.01) benign(0.381) TCGA-LN-A7HW-01 7 139653225 139653225 C T TBXAS1 Missense_Mutation p.A217V 0.06 deleterious(0.01) possibly_damaging(0.609) TCGA-LN-A7HW-01 7 141708393 141708393 C T MGAM Missense_Mutation p.T72I 0.38 tolerated(0.4) benign(0.004) TCGA-LN-A7HW-01 7 142247228 142247228 G A TRBV7-3 Silent p.D76D 0.39 TCGA-LN-A7HW-01 7 15651473 15651473 G A MEOX2 3'UTR 0.26 TCGA-LN-A7HW-01 7 19748587 19748587 G C TWISTNB Missense_Mutation p.S18C 0.33 deleterious(0.01) benign(0.258) TCGA-LN-A7HW-01 7 76908384 76908384 G C CCDC146 Missense_Mutation p.E554Q 0.42 deleterious(0.03) probably_damaging(0.925) TCGA-LN-A7HW-01 8 21925182 21925182 C T DMTN Missense_Mutation p.R80C 0.71 deleterious(0.01) possibly_damaging(0.88) TCGA-LN-A7HW-01 8 25340994 25340994 A G CDCA2 Missense_Mutation p.K371R 0.64 tolerated(0.36) benign(0.002) TCGA-LN-A7HW-01 8 26228342 26228343 - T PPP2R2A 3'UTR 0.22 TCGA-LN-A7HW-01 8 28980128 28980128 A G KIF13B Missense_Mutation p.V1172A 0.61 deleterious(0.01) possibly_damaging(0.54) TCGA-LN-A7HW-01 8 40011816 40011816 G C C8orf4 3'UTR 0.62 TCGA-LN-A7HW-01 9 107298339 107298339 G C OR13C3 Silent p.L252L 0.31 TCGA-LN-A7HW-01 9 116811401 116811401 G A ZNF618 Missense_Mutation p.V514M 0.36 deleterious(0.02) probably_damaging(1) TCGA-LN-A7HW-01 9 131768007 131768007 C T NUP188 Silent p.F1607F 0.43 TCGA-LN-A7HW-01 9 6532760 6532760 C T GLDC 3'UTR 0.70 TCGA-LN-A7HW-01 9 91940893 91940893 A G SECISBP2 Missense_Mutation p.I172V 0.62 tolerated(0.73) benign(0.103) TCGA-LN-A7HW-01 X 153047664 153047664 G A SRPK3 Splice_Site p.X159_splice 0.08 TCGA-LN-A7HW-01 X 30848555 30848555 T C TAB3 3'UTR 0.63 TCGA-LN-A7HW-01 X 91518126 91518126 G A PCDH11X Missense_Mutation p.G1043E 0.73 tolerated(0.24) benign(0.011) TCGA-LN-A7HX-01 10 104835858 104835858 C G CNNM2 Missense_Mutation p.P750R 0.18 deleterious(0.01) possibly_damaging(0.786) TCGA-LN-A7HX-01 10 68526045 68526045 C T CTNNA3 Missense_Mutation p.E420K 0.14 deleterious(0.04) possibly_damaging(0.57) TCGA-LN-A7HX-01 10 70893327 70893327 A G VPS26A Intron 0.54 TCGA-LN-A7HX-01 10 81072411 81072411 C G ZMIZ1 Missense_Mutation p.L1037V 0.44 probably_damaging(0.99) TCGA-LN-A7HX-01 10 81372184 81372184 C A SFTPA1 Missense_Mutation p.P112T 0.24 deleterious(0) benign(0.36) TCGA-LN-A7HX-01 10 857401 857402 - ACT LARP4B 3'UTR 0.43 TCGA-LN-A7HX-01 10 88024517 88024517 C A GRID1 Intron 0.22 TCGA-LN-A7HX-01 10 96022423 96022423 C G PLCE1 Silent p.L1329L 0.20 TCGA-LN-A7HX-01 11 108352752 108352752 G C KDELC2 Silent p.L294L 0.55 TCGA-LN-A7HX-01 11 14486508 14486508 C T COPB1 Missense_Mutation p.A787T 0.12 tolerated(0.15) probably_damaging(1) TCGA-LN-A7HX-01 11 18501963 18501964 - AT TSG101 3'UTR 0.17 TCGA-LN-A7HX-01 11 31112992 31112992 T C DCDC1 Missense_Mutation p.K729E 0.21 tolerated(0.83) benign(0.02) TCGA-LN-A7HX-01 11 31128366 31128366 C A DCDC1 Missense_Mutation p.V577F 0.11 tolerated(0.07) benign(0.028) TCGA-LN-A7HX-01 11 36596307 36596307 C A RAG1 Missense_Mutation p.H485N 0.11 deleterious_low_confidence(0) possibly_damaging(0.838) TCGA-LN-A7HX-01 11 56230677 56230677 C T OR5M9 Silent p.A67A 0.12 TCGA-LN-A7HX-01 11 62910850 62910850 C G SLC22A24 Missense_Mutation p.E134D 0.15 deleterious(0.03) possibly_damaging(0.585) TCGA-LN-A7HX-01 11 6413419 6413422 AAAG - SMPD1 Intron 0.45 TCGA-LN-A7HX-01 11 64697849 64697849 G A PPP2R5B Missense_Mutation p.G260R 0.47 deleterious(0) possibly_damaging(0.716) TCGA-LN-A7HX-01 11 66288790 66288790 A C BBS1 Missense_Mutation p.D258A 0.20 deleterious(0) benign(0.244) TCGA-LN-A7HX-01 11 7083694 7083694 G A NLRP14 Missense_Mutation p.D979N 0.12 deleterious(0.01) benign(0.428) TCGA-LN-A7HX-01 11 92564908 92564910 ACA - FAT3 In_Frame_Del p.N3202del 0.12 TCGA-LN-A7HX-01 11 94282611 94282611 A G FUT4 3'UTR 0.14 TCGA-LN-A7HX-01 11 95502352 95502352 A T FAM76B 3'UTR 0.61 TCGA-LN-A7HX-01 12 132629489 132629489 C T NOC4L Nonsense_Mutation p.Q70* 0.20 TCGA-LN-A7HX-01 12 133372506 133372506 C T GOLGA3 Missense_Mutation p.E801K 0.33 deleterious(0.03) possibly_damaging(0.874) TCGA-LN-A7HX-01 12 133795907 133795907 A C ANHX Missense_Mutation p.S339A 0.52 tolerated(0.11) benign(0.096) TCGA-LN-A7HX-01 12 15035090 15035090 G A MGP Missense_Mutation p.R124C 0.18 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-LN-A7HX-01 12 1995148 1995148 C A CACNA2D4 Missense_Mutation p.D351Y 0.23 deleterious(0) possibly_damaging(0.771) TCGA-LN-A7HX-01 12 22013930 22013930 C G ABCC9 Missense_Mutation p.G800A 0.18 deleterious(0.01) probably_damaging(0.974) TCGA-LN-A7HX-01 12 49218100 49218100 C T CACNB3 Silent p.F117F 0.14 TCGA-LN-A7HX-01 12 57984966 57984966 C G PIP4K2C 5'Flank 0.15 TCGA-LN-A7HX-01 12 66359464 66359464 A T HMGA2 3'UTR 0.16 TCGA-LN-A7HX-01 12 66716526 66716526 G A HELB Missense_Mutation p.D754N 0.34 deleterious(0.01) benign(0.206) TCGA-LN-A7HX-01 12 69233544 69233544 G A MDM2 Missense_Mutation p.C470Y 0.21 deleterious(0) probably_damaging(0.992) TCGA-LN-A7HX-01 12 78574660 78574660 G C NAV3 Missense_Mutation p.E1821Q 0.15 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HX-01 12 81226363 81226363 T C LIN7A Intron 0.31 TCGA-LN-A7HX-01 13 113333639 113333639 T G C13orf35 5'UTR 0.96 TCGA-LN-A7HX-01 13 32978401 32978401 T A N4BP2L1 Intron 0.65 TCGA-LN-A7HX-01 13 52857389 52857389 G A RP11-248G5.8 RNA 0.19 TCGA-LN-A7HX-01 14 47770688 47770688 C T MDGA2 Missense_Mutation p.E116K 0.30 deleterious(0) probably_damaging(0.992) TCGA-LN-A7HX-01 14 64940331 64940331 T - AKAP5 3'UTR 0.21 TCGA-LN-A7HX-01 14 75265542 75265542 A G YLPM1 Missense_Mutation p.Y1181C 0.29 probably_damaging(0.935) TCGA-LN-A7HX-01 14 76425513 76425513 C G TGFB3 3'UTR 0.22 TCGA-LN-A7HX-01 14 99969314 99969314 G A CCNK Missense_Mutation p.R335Q 0.27 tolerated(0.28) unknown(0) TCGA-LN-A7HX-01 15 30058538 30058538 G A TJP1 Missense_Mutation p.R174W 0.57 deleterious(0) probably_damaging(0.973) TCGA-LN-A7HX-01 15 42106776 42106776 A G MAPKBP1 Missense_Mutation p.R343G 0.11 deleterious(0.01) benign(0.042) TCGA-LN-A7HX-01 15 64430097 64430097 A G SNX1 Intron 0.28 TCGA-LN-A7HX-01 15 91549260 91549260 G A VPS33B Silent p.F294F 0.13 TCGA-LN-A7HX-01 16 1260600 1260600 C T CACNA1H Silent p.S1329S 0.27 TCGA-LN-A7HX-01 16 1822500 1822500 C G MRPS34 Missense_Mutation p.E127Q 0.24 tolerated(0.16) benign(0.043) TCGA-LN-A7HX-01 16 20975118 20975118 C T DNAH3 Missense_Mutation p.R3363H 0.27 deleterious(0) probably_damaging(1) TCGA-LN-A7HX-01 16 24950906 24950906 C T ARHGAP17 Silent p.K501K 0.17 TCGA-LN-A7HX-01 16 30793915 30793915 G A ZNF629 Silent p.F578F 0.26 TCGA-LN-A7HX-01 16 56480535 56480535 T C NUDT21 Intron 0.26 TCGA-LN-A7HX-01 16 67180989 67180989 C - C16orf70 Frame_Shift_Del p.R411Gfs*6 0.14 TCGA-LN-A7HX-01 16 67265688 67265688 C T FHOD1 Missense_Mutation p.R746Q 0.36 tolerated(0.08) benign(0.007) TCGA-LN-A7HX-01 16 77240393 77240393 G A SYCE1L Silent p.Q39Q 0.23 TCGA-LN-A7HX-01 17 1674466 1674466 G C SERPINF1 Missense_Mutation p.V143L 0.09 tolerated(0.4) benign(0.009) TCGA-LN-A7HX-01 17 2923853 2923853 C T RAP1GAP2 Missense_Mutation p.T572M 0.11 deleterious(0) benign(0.047) TCGA-LN-A7HX-01 17 39785011 39785011 G A KRT17 5'Flank 0.20 TCGA-LN-A7HX-01 17 43348439 43348439 G A MAP3K14-AS1 3'Flank 0.12 TCGA-LN-A7HX-01 17 4800902 4800902 C A MINK1 3'UTR 0.39 TCGA-LN-A7HX-01 17 51901127 51901127 A T KIF2B Missense_Mutation p.M245L 0.12 tolerated(0.5) benign(0.046) TCGA-LN-A7HX-01 17 56345434 56345434 C A LPO 3'UTR 0.32 TCGA-LN-A7HX-01 17 60020268 60020268 C G MED13 3'UTR 0.43 TCGA-LN-A7HX-01 17 60023404 60023404 G A MED13 3'UTR 0.18 TCGA-LN-A7HX-01 17 60865948 60865948 G A MARCH10 Nonsense_Mutation p.R35* 0.17 TCGA-LN-A7HX-01 17 61514912 61514912 G T CYB561 5'UTR 0.26 TCGA-LN-A7HX-01 17 66878742 66878742 C T ABCA8 Missense_Mutation p.E1236K 0.20 deleterious(0) possibly_damaging(0.521) TCGA-LN-A7HX-01 17 74395935 74395935 C A UBE2O Missense_Mutation p.R408L 0.29 tolerated(0.3) benign(0.03) TCGA-LN-A7HX-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.32 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HX-01 17 7578410 7578410 T A TP53 Missense_Mutation p.R174W 0.35 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HX-01 17 76227867 76227868 - CTTC TMEM235 5'Flank 0.39 TCGA-LN-A7HX-01 17 80789490 80789490 G A ZNF750 Missense_Mutation p.P281S 0.49 deleterious(0) benign(0.003) TCGA-LN-A7HX-01 18 10487902 10487902 C T APCDD1 Missense_Mutation p.P471L 0.35 tolerated(0.11) benign(0.01) TCGA-LN-A7HX-01 18 12825906 12825906 T A PTPN2 Missense_Mutation p.E133V 0.14 tolerated(0.09) benign(0.007) TCGA-LN-A7HX-01 18 44634276 44634276 T C HDHD2 3'UTR 0.12 TCGA-LN-A7HX-01 18 71740731 71740731 C T FBXO15 Missense_Mutation p.A500T 0.16 tolerated(0.4) benign(0.054) TCGA-LN-A7HX-01 18 77906059 77906059 G C AC139100.2 Silent p.L6L 0.28 TCGA-LN-A7HX-01 19 20808428 20808428 A C ZNF626 Silent p.L85L 0.32 TCGA-LN-A7HX-01 19 37677429 37677429 T C ZNF585B Missense_Mutation p.N337S 0.43 tolerated(0.5) benign(0.005) TCGA-LN-A7HX-01 19 39443225 39443225 G A FBXO17 Intron 0.29 TCGA-LN-A7HX-01 19 49299887 49299887 G A BCAT2 Missense_Mutation p.S338L 0.24 deleterious(0) probably_damaging(0.961) TCGA-LN-A7HX-01 19 51537306 51537306 T G KLK12 Missense_Mutation p.T43P 0.43 tolerated(0.3) possibly_damaging(0.452) TCGA-LN-A7HX-01 19 52096164 52096164 G T AC018755.1 Missense_Mutation p.P172T 0.52 possibly_damaging(0.803) TCGA-LN-A7HX-01 19 54203326 54203326 C A MIR518F RNA 0.17 TCGA-LN-A7HX-01 19 56701233 56701233 C T ZSCAN5B Missense_Mutation p.R484H 0.24 tolerated(0.07) possibly_damaging(0.685) TCGA-LN-A7HX-01 19 9929491 9929491 A G FBXL12 5'UTR 0.15 TCGA-LN-A7HX-01 1 110565757 110565757 C A AHCYL1 3'UTR 0.21 TCGA-LN-A7HX-01 1 110883406 110883406 G C RBM15 Missense_Mutation p.G460A 0.15 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HX-01 1 1330816 1330816 G C CCNL2 Silent p.L184L 0.18 TCGA-LN-A7HX-01 1 147091533 147091533 A G BCL9 Silent p.E524E 0.40 TCGA-LN-A7HX-01 1 153433102 153433102 C G S100A7 5'UTR 0.50 TCGA-LN-A7HX-01 1 155920753 155920753 C T ARHGEF2 Missense_Mutation p.R857Q 0.33 tolerated(0.23) benign(0.141) TCGA-LN-A7HX-01 1 159904038 159904038 T C IGSF9 Missense_Mutation p.N349S 0.35 deleterious(0.02) benign(0.008) TCGA-LN-A7HX-01 1 1635409 1635409 G T CDK11A Intron 0.21 TCGA-LN-A7HX-01 1 167343528 167343528 G C POU2F1 Missense_Mutation p.A196P 0.22 deleterious(0) unknown(0) TCGA-LN-A7HX-01 1 174417375 174417375 C G GPR52 Missense_Mutation p.F42L 0.16 tolerated(1) benign(0) TCGA-LN-A7HX-01 1 185902946 185902946 C G HMCN1 Silent p.L606L 0.20 TCGA-LN-A7HX-01 1 200817688 200817688 T G CAMSAP2 Silent p.G597G 0.35 TCGA-LN-A7HX-01 1 202742369 202742369 T C KDM5B Silent p.K151K 0.41 TCGA-LN-A7HX-01 1 226475472 226475476 TGGTG - LIN9 Frame_Shift_Del p.T112Rfs*2 0.11 TCGA-LN-A7HX-01 1 226822416 226822416 C T ITPKB Missense_Mutation p.V933I 0.09 tolerated(1) benign(0) TCGA-LN-A7HX-01 1 27425903 27425904 - G SLC9A1 3'UTR 0.15 TCGA-LN-A7HX-01 1 3348663 3348663 G C PRDM16 Missense_Mutation p.E1219Q 0.25 deleterious(0.01) benign(0.323) TCGA-LN-A7HX-01 1 47015625 47015625 G T KNCN Intron 0.30 TCGA-LN-A7HX-01 1 70484450 70484450 C A LRRC7 Missense_Mutation p.Q419K 0.14 tolerated(0.75) probably_damaging(0.93) TCGA-LN-A7HX-01 1 71869644 71869644 C A NEGR1 3'UTR 0.15 TCGA-LN-A7HX-01 1 89521730 89521730 T - GBP1 Frame_Shift_Del p.K446Sfs*20 0.21 TCGA-LN-A7HX-01 1 92643979 92643979 G A KIAA1107 Missense_Mutation p.S413N 0.39 tolerated(0.88) benign(0.014) TCGA-LN-A7HX-01 1 987191 987191 G T AGRN Nonsense_Mutation p.E1883* 0.32 TCGA-LN-A7HX-01 1 99358618 99358618 T A LPPR5 3'UTR 0.17 TCGA-LN-A7HX-01 20 18370413 18370413 C A DZANK1 Missense_Mutation p.M650I 0.09 tolerated(0.08) benign(0.002) TCGA-LN-A7HX-01 20 25058370 25058370 G A VSX1 Silent p.L253L 0.22 TCGA-LN-A7HX-01 20 2638990 2638990 G A NOP56 3'UTR 0.23 TCGA-LN-A7HX-01 20 4764195 4764195 T A RASSF2 3'UTR 0.27 TCGA-LN-A7HX-01 20 56225019 56225019 G A PMEPA1 3'UTR 0.50 TCGA-LN-A7HX-01 20 57598917 57598917 C T TUBB1 Silent p.S145S 0.17 TCGA-LN-A7HX-01 20 6759945 6759945 C G BMP2 3'UTR 0.41 TCGA-LN-A7HX-01 20 9510833 9510833 C A LAMP5 3'UTR 0.19 TCGA-LN-A7HX-01 21 10998232 10998232 C G TPTE RNA 0.09 TCGA-LN-A7HX-01 22 17443733 17443733 C G GAB4 Missense_Mutation p.V539L 0.19 deleterious(0) benign(0.011) TCGA-LN-A7HX-01 22 22127181 22127181 T C MAPK1 Missense_Mutation p.Y316C 0.10 deleterious(0.01) benign(0.237) TCGA-LN-A7HX-01 22 24466798 24466798 C T CABIN1 Silent p.S760S 0.21 TCGA-LN-A7HX-01 22 30824783 30824783 G T MTFP1 3'UTR 0.36 TCGA-LN-A7HX-01 2 105473134 105473134 C G POU3F3 Nonsense_Mutation p.S389* 0.29 TCGA-LN-A7HX-01 2 113940984 113940984 C T PSD4 Silent p.T317T 0.31 TCGA-LN-A7HX-01 2 130900736 130900736 G A CCDC74B Intron 0.35 TCGA-LN-A7HX-01 2 152226702 152226702 G A TNFAIP6 Missense_Mutation p.C188Y 0.32 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HX-01 2 166231377 166231377 G C SCN2A Missense_Mutation p.E1385D 0.21 tolerated(1) benign(0.001) TCGA-LN-A7HX-01 2 173338951 173338951 C T ITGA6 Missense_Mutation p.S315L 0.20 deleterious(0) probably_damaging(0.993) TCGA-LN-A7HX-01 2 202565652 202565652 G A ALS2 3'UTR 0.40 TCGA-LN-A7HX-01 2 56612244 56612244 T A CCDC85A 3'UTR 0.50 TCGA-LN-A7HX-01 2 98167802 98167802 G C ANKRD36B RNA 0.13 TCGA-LN-A7HX-01 3 10369319 10369319 C T ATP2B2 3'UTR 0.19 TCGA-LN-A7HX-01 3 109027896 109027896 G A DPPA2 Missense_Mutation p.H125Y 0.26 tolerated(0.12) probably_damaging(0.932) TCGA-LN-A7HX-01 3 110831057 110831057 A G PVRL3 Missense_Mutation p.Q114R 0.29 tolerated(0.22) possibly_damaging(0.721) TCGA-LN-A7HX-01 3 124826791 124826791 G T SLC12A8 Silent p.T413T 0.16 TCGA-LN-A7HX-01 3 124945667 124945667 C A ZNF148 3'UTR 0.21 TCGA-LN-A7HX-01 3 14567437 14567437 G A GRIP2 Intron 0.42 TCGA-LN-A7HX-01 3 16629129 16629129 C G DAZL 3'UTR 0.48 TCGA-LN-A7HX-01 3 184075234 184075234 C G CLCN2 Missense_Mutation p.V272L 0.89 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HX-01 3 189585728 189585728 G A TP63 Missense_Mutation p.R330K 0.16 tolerated(0.34) probably_damaging(0.989) TCGA-LN-A7HX-01 3 195509844 195509844 G A MUC4 Silent p.D2869D 0.09 TCGA-LN-A7HX-01 3 196050665 196050665 C A TM4SF19 3'UTR 0.33 TCGA-LN-A7HX-01 3 28364174 28364174 T C CMC1 3'UTR 0.17 TCGA-LN-A7HX-01 3 3139822 3139822 T A IL5RA Missense_Mutation p.R174W 0.60 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HX-01 3 32804464 32804464 A G CNOT10 Intron 0.44 TCGA-LN-A7HX-01 3 41266472 41266472 G T CTNNB1 Missense_Mutation p.R90L 0.18 tolerated(0.07) probably_damaging(0.966) TCGA-LN-A7HX-01 4 100784193 100784193 G T DAPP1 Silent p.L188L 0.41 TCGA-LN-A7HX-01 4 102251465 102251465 G C PPP3CA Intron 0.19 TCGA-LN-A7HX-01 4 126336313 126336313 T C FAT4 Silent p.I2065I 0.28 TCGA-LN-A7HX-01 4 158281215 158281215 G A GRIA2 Silent p.K737K 0.22 TCGA-LN-A7HX-01 4 164466807 164466807 C A MARCH1 Missense_Mutation p.W171L 0.17 deleterious(0.03) benign(0.225) TCGA-LN-A7HX-01 4 47548721 47548721 A G ATP10D Missense_Mutation p.M493V 0.43 tolerated(0.56) benign(0.002) TCGA-LN-A7HX-01 4 57216134 57216134 G A AASDH Missense_Mutation p.L595F 0.20 tolerated(0.42) benign(0.116) TCGA-LN-A7HX-01 4 68355801 68355801 T A CENPC Nonsense_Mutation p.K852* 0.10 TCGA-LN-A7HX-01 4 85729487 85729487 C G WDFY3 Missense_Mutation p.R810T 0.12 tolerated(0.3) benign(0.306) TCGA-LN-A7HX-01 5 130980297 130980297 G A FNIP1 3'UTR 0.27 TCGA-LN-A7HX-01 5 140229864 140229864 G A PCDHA9 Missense_Mutation p.R595H 0.48 tolerated_low_confidence(0.07) probably_damaging(0.981) TCGA-LN-A7HX-01 5 140782780 140782780 G A PCDHGA9 Silent p.A87A 0.29 TCGA-LN-A7HX-01 5 162940973 162940973 G A MAT2B Missense_Mutation p.E167K 0.22 deleterious(0) probably_damaging(0.99) TCGA-LN-A7HX-01 5 35049407 35049407 C T AGXT2 5'Flank 0.12 TCGA-LN-A7HX-01 5 40767573 40767573 A G PRKAA1 Silent p.D287D 0.33 TCGA-LN-A7HX-01 5 67597262 67597262 G A PIK3R1 3'UTR 0.21 TCGA-LN-A7HX-01 5 71482557 71482557 C G MAP1B Missense_Mutation p.F162L 0.35 unknown(0) TCGA-LN-A7HX-01 5 79354543 79354543 G A THBS4 Missense_Mutation p.R221Q 0.41 tolerated(0.14) possibly_damaging(0.667) TCGA-LN-A7HX-01 6 136579981 136579981 C A BCLAF1 3'UTR 0.11 TCGA-LN-A7HX-01 6 151293122 151293122 A G MTHFD1L Missense_Mutation p.I685V 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A7HX-01 6 29588992 29588992 G T GABBR1 Silent p.I403I 0.19 TCGA-LN-A7HX-01 6 31637232 31637232 C T CSNK2B-LY6G5B-1181 Silent p.F168F 0.21 TCGA-LN-A7HX-01 6 32184785 32184785 C T NOTCH4 Missense_Mutation p.V600I 0.15 tolerated(0.1) benign(0.005) TCGA-LN-A7HX-01 6 35263676 35263676 T A ZNF76 3'UTR 0.20 TCGA-LN-A7HX-01 6 35787239 35787239 C T LHFPL5 Intron 0.18 TCGA-LN-A7HX-01 6 97001214 97001214 C G UFL1 Silent p.V740V 0.12 TCGA-LN-A7HX-01 7 100419977 100419977 C A EPHB4 Missense_Mutation p.D242Y 0.26 deleterious(0) probably_damaging(0.982) TCGA-LN-A7HX-01 7 102957429 102957429 C T DNAJC2 Silent p.E425E 0.21 TCGA-LN-A7HX-01 7 107872819 107872819 C T NRCAM Silent p.R126R 0.22 TCGA-LN-A7HX-01 7 138522658 138522658 T C KIAA1549 Missense_Mutation p.H1949R 0.13 deleterious(0.03) benign(0.055) TCGA-LN-A7HX-01 7 92098694 92098694 A G ERVW-1 Silent p.G334G 0.41 TCGA-LN-A7HX-01 8 104892864 104892864 A G RIMS2 Intron 0.09 TCGA-LN-A7HX-01 8 106815849 106815849 A T ZFPM2 3'UTR 0.13 TCGA-LN-A7HX-01 8 11666396 11666396 A G FDFT1 Missense_Mutation p.M65V 0.19 tolerated(0.06) benign(0.005) TCGA-LN-A7HX-01 8 124094947 124094947 A G TBC1D31 Missense_Mutation p.N77S 0.20 tolerated(0.4) benign(0.004) TCGA-LN-A7HX-01 8 124214741 124214741 C A FAM83A Intron 0.61 TCGA-LN-A7HX-01 8 145004664 145004664 G A PLEC Missense_Mutation p.S919L 0.16 unknown(0) TCGA-LN-A7HX-01 8 146035992 146035992 A T ZNF517 3'Flank 0.56 TCGA-LN-A7HX-01 8 39785379 39785379 G C IDO1 Missense_Mutation p.R296T 0.19 deleterious(0.01) probably_damaging(1) TCGA-LN-A7HX-01 8 59719147 59719148 - T TOX 3'UTR 0.11 TCGA-LN-A7HX-01 8 77767813 77767813 T G ZFHX4 Missense_Mutation p.F2886V 0.58 benign(0.061) TCGA-LN-A7HX-01 9 131446208 131446208 C G SET Missense_Mutation p.Q12E 0.26 deleterious_low_confidence(0.02) unknown(0) TCGA-LN-A7HX-01 9 140084285 140084285 C A SSNA1 Silent p.L93L 0.67 TCGA-LN-A7HX-01 9 80430560 80430560 C T GNAQ Missense_Mutation p.E150K 0.31 deleterious(0.01) possibly_damaging(0.897) TCGA-LN-A7HX-01 X 114398259 114398259 C T LRCH2 Silent p.L481L 0.29 TCGA-LN-A7HX-01 X 146312548 146312548 C G MIR507 RNA 0.26 TCGA-LN-A7HX-01 X 20043083 20043083 C A MAP7D2 Missense_Mutation p.K466N 0.21 deleterious(0.01) unknown(0) TCGA-LN-A7HX-01 X 32382799 32382799 T C DMD Missense_Mutation p.D1685G 0.21 benign(0.182) TCGA-LN-A7HY-01 10 106937814 106937814 T A SORCS3 Intron 0.33 TCGA-LN-A7HY-01 10 106937815 106937815 C A SORCS3 Intron 0.33 TCGA-LN-A7HY-01 10 116048824 116048824 C T VWA2 Silent p.D566D 0.09 TCGA-LN-A7HY-01 10 119767619 119767619 T C RAB11FIP2 3'UTR 0.42 TCGA-LN-A7HY-01 10 126097428 126097428 C T OAT Silent p.K102K 0.39 TCGA-LN-A7HY-01 10 127708373 127708373 G C ADAM12 Missense_Mutation p.P854A 0.20 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HY-01 10 25138797 25138797 G C PRTFDC1 Missense_Mutation p.H218Q 0.24 tolerated(0.6) benign(0.002) TCGA-LN-A7HY-01 10 30739243 30739243 C T MAP3K8 Silent p.H187H 0.21 TCGA-LN-A7HY-01 10 69751986 69751986 G C HERC4 Missense_Mutation p.P414R 0.19 tolerated(0.5) benign(0.018) TCGA-LN-A7HY-01 10 70451883 70451883 G T TET1 3'UTR 0.17 TCGA-LN-A7HY-01 10 71266819 71266819 G A TSPAN15 3'UTR 0.20 TCGA-LN-A7HY-01 10 93609336 93609336 A G TNKS2 Missense_Mutation p.I893M 0.31 deleterious(0.03) benign(0.309) TCGA-LN-A7HY-01 10 99079857 99079857 C T FRAT1 Missense_Mutation p.A216V 0.18 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HY-01 11 110102443 110102443 G A RDX Intron 0.20 TCGA-LN-A7HY-01 11 113270738 113270738 G A ANKK1 Missense_Mutation p.A683T 0.19 tolerated(0.06) benign(0.425) TCGA-LN-A7HY-01 11 118472173 118472173 C G ARCN1 3'UTR 0.53 TCGA-LN-A7HY-01 11 119056655 119056655 T C PDZD3 Missense_Mutation p.L13S 0.56 tolerated(0.08) benign(0.094) TCGA-LN-A7HY-01 11 123900843 123900843 T C OR10G8 Missense_Mutation p.W172R 0.06 tolerated(0.25) benign(0) TCGA-LN-A7HY-01 11 124294378 124294378 G T OR8B4 Silent p.L130L 0.38 TCGA-LN-A7HY-01 11 126080863 126080863 T C RPUSD4 Missense_Mutation p.K93E 0.29 deleterious(0) possibly_damaging(0.688) TCGA-LN-A7HY-01 11 133902537 133902537 G A RP11-713P17.3 RNA 0.30 TCGA-LN-A7HY-01 11 133902538 133902538 C A RP11-713P17.3 RNA 0.30 TCGA-LN-A7HY-01 11 62931426 62931426 G A SLC22A25 Missense_Mutation p.A505V 0.51 deleterious(0.01) benign(0.064) TCGA-LN-A7HY-01 11 76883843 76883843 G A MYO7A Missense_Mutation p.R616Q 0.20 tolerated(1) probably_damaging(0.964) TCGA-LN-A7HY-01 12 104519955 104519955 A G NFYB Silent p.D56D 0.38 TCGA-LN-A7HY-01 12 105551051 105551051 G T KIAA1033 Nonsense_Mutation p.E955* 0.28 TCGA-LN-A7HY-01 12 10562233 10562233 T C KLRC4 5'UTR 0.61 TCGA-LN-A7HY-01 12 117977636 117977636 C T KSR2 Silent p.T525T 0.61 TCGA-LN-A7HY-01 12 13761566 13761566 C G GRIN2B Missense_Mutation p.D661H 0.54 deleterious(0) probably_damaging(0.964) TCGA-LN-A7HY-01 12 15777165 15777165 G C EPS8 Missense_Mutation p.P741A 0.40 tolerated(0.35) possibly_damaging(0.452) TCGA-LN-A7HY-01 12 46591568 46591568 G C SLC38A1 Missense_Mutation p.L433V 0.23 deleterious(0) benign(0.182) TCGA-LN-A7HY-01 12 4705422 4705422 G A DYRK4 Silent p.V130V 0.50 TCGA-LN-A7HY-01 12 57397269 57397269 T C ZBTB39 Missense_Mutation p.K478R 0.35 tolerated(0.35) probably_damaging(0.986) TCGA-LN-A7HY-01 12 69229656 69229656 G A MDM2 Silent p.Q244Q 0.15 TCGA-LN-A7HY-01 12 80714314 80714314 G A OTOGL Silent p.R1296R 0.13 TCGA-LN-A7HY-01 12 80982205 80982205 G T PTPRQ Missense_Mutation p.W1524L 0.19 deleterious(0) probably_damaging(0.991) TCGA-LN-A7HY-01 12 88478393 88478393 C A CEP290 Missense_Mutation p.K1558N 0.18 probably_damaging(0.999) TCGA-LN-A7HY-01 12 98927030 98927030 G C TMPO Missense_Mutation p.R332T 0.22 deleterious_low_confidence(0) benign(0.019) TCGA-LN-A7HY-01 13 103524642 103524642 C T BIVM-ERCC5 Missense_Mutation p.P1351S 0.52 tolerated(0.44) benign(0.303) TCGA-LN-A7HY-01 13 114541138 114541138 C A GAS6 Missense_Mutation p.G165W 0.53 deleterious(0) probably_damaging(1) TCGA-LN-A7HY-01 13 23911518 23911518 C T SACS Missense_Mutation p.R2166H 0.57 probably_damaging(0.996) TCGA-LN-A7HY-01 13 38266166 38266166 C A TRPC4 Missense_Mutation p.V402F 0.60 deleterious(0.01) probably_damaging(0.998) TCGA-LN-A7HY-01 14 104212750 104212750 G C PPP1R13B Silent p.L370L 0.51 TCGA-LN-A7HY-01 14 21216340 21216340 C A EDDM3A 3'UTR 0.35 TCGA-LN-A7HY-01 14 24114459 24114459 C G DHRS2 Missense_Mutation p.S284C 0.38 deleterious_low_confidence(0) possibly_damaging(0.701) TCGA-LN-A7HY-01 14 29237879 29237879 C T FOXG1 Missense_Mutation p.T465M 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.521) TCGA-LN-A7HY-01 14 31348140 31348140 C A COCH Missense_Mutation p.F121L 0.42 deleterious(0.01) benign(0.028) TCGA-LN-A7HY-01 14 36840759 36840759 C T DPPA3P2 RNA 0.25 TCGA-LN-A7HY-01 14 45542728 45542728 G C FAM179B Missense_Mutation p.E1709D 0.35 deleterious(0.02) possibly_damaging(0.499) TCGA-LN-A7HY-01 14 52466445 52466445 G A C14orf166 Silent p.K131K 0.39 TCGA-LN-A7HY-01 14 74196531 74196531 G C ELMSAN1 Missense_Mutation p.S636C 0.36 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HY-01 14 77572068 77572068 C G CIPC Missense_Mutation p.P6R 0.29 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-LN-A7HY-01 15 20657659 20657659 C A HERC2P3 RNA 0.15 TCGA-LN-A7HY-01 15 23201597 23201597 C A WHAMMP3 RNA 0.37 TCGA-LN-A7HY-01 15 25924401 25924401 T G ATP10A 3'UTR 0.35 TCGA-LN-A7HY-01 15 40509785 40509785 G T BUB1B Missense_Mutation p.D923Y 0.21 deleterious(0.01) possibly_damaging(0.903) TCGA-LN-A7HY-01 15 75014841 75014841 C G CYP1A1 Missense_Mutation p.A200P 0.35 deleterious(0) probably_damaging(0.99) TCGA-LN-A7HY-01 15 77473641 77473641 T A PEAK1 Missense_Mutation p.I210F 0.19 tolerated(0.08) benign(0.355) TCGA-LN-A7HY-01 16 19590313 19590313 C T C16orf62 Intron 0.37 TCGA-LN-A7HY-01 16 20818390 20818390 G A AC004381.6 Missense_Mutation p.E39K 0.04 tolerated_low_confidence(0.16) benign(0.007) TCGA-LN-A7HY-01 16 53279712 53279712 A G CHD9 Missense_Mutation p.N1135S 0.35 probably_damaging(0.999) TCGA-LN-A7HY-01 16 55866958 55866958 G A CES1 Missense_Mutation p.R4C 0.16 tolerated(0.24) benign(0.001) TCGA-LN-A7HY-01 16 58577401 58577401 T C CNOT1 Intron 0.40 TCGA-LN-A7HY-01 16 70187417 70187417 A G PDPR Missense_Mutation p.I726V 0.17 deleterious(0.02) benign(0.033) TCGA-LN-A7HY-01 16 74657208 74657208 C G RFWD3 3'UTR 0.38 TCGA-LN-A7HY-01 16 75681753 75681753 G C TERF2IP 5'UTR 0.42 TCGA-LN-A7HY-01 17 11985275 11985275 C T MAP2K4 Intron 0.46 TCGA-LN-A7HY-01 17 18874831 18874831 G A FAM83G Silent p.T771T 0.63 TCGA-LN-A7HY-01 17 26091136 26091136 G T NOS2 Silent p.P821P 0.61 TCGA-LN-A7HY-01 17 40695161 40695161 G T NAGLU Silent p.L379L 0.58 TCGA-LN-A7HY-01 17 60033165 60033165 C A MED13 Missense_Mutation p.Q1886H 0.40 tolerated(0.2) probably_damaging(0.991) TCGA-LN-A7HY-01 17 7578179 7578179 C A TP53 Nonsense_Mutation p.E224* 0.62 TCGA-LN-A7HY-01 17 78410075 78410075 G A ENDOV 3'UTR 0.56 TCGA-LN-A7HY-01 18 14337526 14337526 C A CYP4F35P RNA 0.58 TCGA-LN-A7HY-01 18 14542998 14542998 C A POTEC Missense_Mutation p.D50Y 0.06 deleterious_low_confidence(0.03) probably_damaging(0.92) TCGA-LN-A7HY-01 18 14850253 14850253 G C ANKRD30B Missense_Mutation p.D1027H 0.59 tolerated(0.06) probably_damaging(0.969) TCGA-LN-A7HY-01 18 59925833 59925833 C T KIAA1468 Missense_Mutation p.A709V 0.66 tolerated(0.14) benign(0.275) TCGA-LN-A7HY-01 18 60028959 60028959 G A TNFRSF11A Silent p.A221A 0.20 TCGA-LN-A7HY-01 18 66504325 66504325 G T CCDC102B Missense_Mutation p.V109F 0.67 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HY-01 19 12127157 12127157 G A ZNF433 Silent p.C175C 0.27 TCGA-LN-A7HY-01 19 12430312 12430312 T A ZNF563 Missense_Mutation p.K176I 0.35 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HY-01 19 14581013 14581013 A G PKN1 Missense_Mutation p.T784A 0.38 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HY-01 19 20959180 20959180 C A ZNF66 5'Flank 0.10 TCGA-LN-A7HY-01 19 21909627 21909627 C T ZNF100 Missense_Mutation p.R496Q 0.06 tolerated(1) benign(0.003) TCGA-LN-A7HY-01 19 23433093 23433093 A G ZNF724P 5'UTR 0.33 TCGA-LN-A7HY-01 19 24310988 24310988 A G ZNF254 3'UTR 0.56 TCGA-LN-A7HY-01 19 35175213 35175213 G A ZNF302 Missense_Mutation p.E91K 0.04 tolerated(0.33) possibly_damaging(0.641) TCGA-LN-A7HY-01 19 37976197 37976197 G T ZNF570 3'UTR 0.32 TCGA-LN-A7HY-01 19 3982015 3982015 G A EEF2 Missense_Mutation p.S276L 0.22 tolerated(0.07) benign(0.069) TCGA-LN-A7HY-01 19 53669199 53669199 C T ZNF665 Missense_Mutation p.E182K 0.24 tolerated(0.24) benign(0.023) TCGA-LN-A7HY-01 19 55329985 55329985 C A KIR3DL1 Silent p.R96R 0.21 TCGA-LN-A7HY-01 19 55966407 55966407 T C ISOC2 Silent p.E178E 0.40 TCGA-LN-A7HY-01 19 58386173 58386173 C T ZNF814 Silent p.E195E 0.38 TCGA-LN-A7HY-01 19 7506809 7506809 G A ARHGEF18 Missense_Mutation p.A223T 0.08 tolerated(0.08) benign(0.194) TCGA-LN-A7HY-01 19 8587613 8587613 C G MYO1F Silent p.P985P 0.30 TCGA-LN-A7HY-01 19 9045688 9045688 T C MUC16 Silent p.T11981T 0.10 TCGA-LN-A7HY-01 1 104114305 104114305 T C AMY2B Silent p.S27S 0.48 TCGA-LN-A7HY-01 1 113460201 113460201 C T SLC16A1 Missense_Mutation p.G276E 0.43 deleterious(0) probably_damaging(0.982) TCGA-LN-A7HY-01 1 114633461 114633462 - T SYT6 3'UTR 0.12 TCGA-LN-A7HY-01 1 12017059 12017059 C T PLOD1 Silent p.N243N 0.32 TCGA-LN-A7HY-01 1 156044300 156044300 T G MEX3A 3'UTR 0.30 TCGA-LN-A7HY-01 1 158299306 158299306 C T CD1B Missense_Mutation p.G247D 0.26 tolerated(0.11) possibly_damaging(0.641) TCGA-LN-A7HY-01 1 158988029 158988035 CAGTGGC - IFI16 Frame_Shift_Del p.V188Nfs*4 0.12 TCGA-LN-A7HY-01 1 16059221 16059221 C G PLEKHM2 Missense_Mutation p.Q974E 0.27 deleterious(0) probably_damaging(0.995) TCGA-LN-A7HY-01 1 161143503 161143503 T C B4GALT3 Missense_Mutation p.Q232R 0.28 tolerated(0.12) benign(0.063) TCGA-LN-A7HY-01 1 16456798 16456798 G T EPHA2 Missense_Mutation p.F864L 0.14 deleterious(0.01) benign(0.144) TCGA-LN-A7HY-01 1 176734935 176734935 C T PAPPA2 Missense_Mutation p.L1429F 0.06 deleterious(0) probably_damaging(0.992) TCGA-LN-A7HY-01 1 182850531 182850531 A G DHX9 Silent p.L919L 0.28 TCGA-LN-A7HY-01 1 201336929 201336929 C T TNNT2 Missense_Mutation p.E47K 0.12 tolerated(0.74) unknown(0) TCGA-LN-A7HY-01 1 207139152 207139152 T C FCAMR Missense_Mutation p.E74G 0.68 tolerated(0.32) benign(0.037) TCGA-LN-A7HY-01 1 208315682 208315682 C T PLXNA2 Missense_Mutation p.E500K 0.44 deleterious(0.03) benign(0.03) TCGA-LN-A7HY-01 1 20879570 20879570 G C FAM43B Missense_Mutation p.S35T 0.38 tolerated(0.18) benign(0.011) TCGA-LN-A7HY-01 1 217842377 217842377 A T SPATA17 Silent p.V81V 0.13 TCGA-LN-A7HY-01 1 227843492 227843492 A C ZNF678 Missense_Mutation p.E514A 0.21 deleterious(0) benign(0.286) TCGA-LN-A7HY-01 1 245849500 245849500 G T KIF26B Missense_Mutation p.S1072I 0.57 deleterious(0) unknown(0) TCGA-LN-A7HY-01 1 31901872 31901872 C G SERINC2 Silent p.L285L 0.27 TCGA-LN-A7HY-01 1 40782797 40782797 T A COL9A2 Missense_Mutation p.I25F 0.68 tolerated(0.14) unknown(0) TCGA-LN-A7HY-01 1 41945149 41945149 G - EDN2 Frame_Shift_Del p.F157Lfs*75 0.09 TCGA-LN-A7HY-01 1 52303157 52303157 A T NRD1 Splice_Site p.X255_splice 0.29 TCGA-LN-A7HY-01 1 53542922 53542922 C G PODN Missense_Mutation p.N262K 0.44 tolerated(0.28) probably_damaging(0.979) TCGA-LN-A7HY-01 1 6521428 6521428 T G TNFRSF25 3'UTR 0.25 TCGA-LN-A7HY-01 1 880079 880079 C T NOC2L Missense_Mutation p.D749N 0.20 deleterious_low_confidence(0) possibly_damaging(0.555) TCGA-LN-A7HY-01 1 89886764 89886764 C T GBP1P1 Intron 0.19 TCGA-LN-A7HY-01 20 32212784 32212784 C G CBFA2T2 Missense_Mutation p.L312V 0.05 tolerated(0.53) benign(0.045) TCGA-LN-A7HY-01 20 61513761 61513761 C G DIDO1 Missense_Mutation p.E1183Q 0.44 probably_damaging(0.939) TCGA-LN-A7HY-01 20 61594982 61594982 C T SLC17A9 Missense_Mutation p.L258F 0.45 tolerated(0.05) possibly_damaging(0.768) TCGA-LN-A7HY-01 21 11039097 11039097 C A BAGE2 RNA 0.04 TCGA-LN-A7HY-01 21 30693632 30693632 T C BACH1 Missense_Mutation p.Y11H 0.26 deleterious(0) probably_damaging(0.993) TCGA-LN-A7HY-01 21 46011332 46011332 C A KRTAP10-6 Missense_Mutation p.C345F 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-LN-A7HY-01 22 21384088 21384088 A G SLC7A4 Missense_Mutation p.L512P 0.19 deleterious(0) probably_damaging(0.986) TCGA-LN-A7HY-01 22 29694864 29694864 G A EWSR1 Missense_Mutation p.G525E 0.11 deleterious(0) unknown(0) TCGA-LN-A7HY-01 22 36877656 36877656 C G TXN2 5'UTR 0.43 TCGA-LN-A7HY-01 22 38061677 38061677 C T PDXP Silent p.P230P 0.43 TCGA-LN-A7HY-01 22 39914049 39914049 T C MIEF1 3'UTR 0.10 TCGA-LN-A7HY-01 22 40085211 40085211 C T CACNA1I 3'UTR 0.16 TCGA-LN-A7HY-01 22 41566507 41566507 C T EP300 Nonsense_Mutation p.R1462* 0.20 TCGA-LN-A7HY-01 22 42607581 42607581 T A TCF20 Missense_Mutation p.D1244V 0.49 probably_damaging(0.98) TCGA-LN-A7HY-01 2 113831923 113831923 A G IL1F10 Missense_Mutation p.Q17R 0.35 tolerated(0.08) probably_damaging(0.986) TCGA-LN-A7HY-01 2 114354120 114354120 C T WASH2P RNA 0.17 TCGA-LN-A7HY-01 2 128391782 128391782 G A MYO7B Missense_Mutation p.R1822Q 0.42 tolerated(0.07) benign(0.421) TCGA-LN-A7HY-01 2 129025972 129025972 T C HS6ST1 Missense_Mutation p.I334V 0.36 tolerated(0.2) benign(0.027) TCGA-LN-A7HY-01 2 159028672 159028672 G A CCDC148 Nonsense_Mutation p.Q577* 0.30 TCGA-LN-A7HY-01 2 200322723 200322723 A T SATB2 5'UTR 0.09 TCGA-LN-A7HY-01 2 207406859 207406859 G T ADAM23 Splice_Site p.X219_splice 0.72 TCGA-LN-A7HY-01 2 27845339 27845339 T C ZNF512 3'UTR 0.46 TCGA-LN-A7HY-01 2 36691738 36691738 A C CRIM1 Missense_Mutation p.I311L 0.20 tolerated(0.6) possibly_damaging(0.651) TCGA-LN-A7HY-01 2 55074758 55074758 C G EML6 Silent p.V395V 0.52 TCGA-LN-A7HY-01 2 58276079 58276079 G A VRK2 Missense_Mutation p.G38E 0.43 deleterious(0) probably_damaging(1) TCGA-LN-A7HY-01 2 73215478 73215478 C G SFXN5 Splice_Site p.X179_splice 0.17 TCGA-LN-A7HY-01 2 77749339 77749339 C A LRRTM4 5'UTR 0.22 TCGA-LN-A7HY-01 2 85839075 85839075 G T C2orf68 Missense_Mutation p.H11Q 0.36 tolerated_low_confidence(0.22) benign(0.001) TCGA-LN-A7HY-01 2 95691529 95691529 C A MAL 5'UTR 0.67 TCGA-LN-A7HY-01 3 10442741 10442741 C T ATP2B2 Missense_Mutation p.G226D 0.22 deleterious(0) probably_damaging(1) TCGA-LN-A7HY-01 3 123301134 123301134 A T PTPLB Silent p.A66A 0.15 TCGA-LN-A7HY-01 3 123452795 123452795 C T MYLK Missense_Mutation p.A350T 0.44 tolerated(0.67) possibly_damaging(0.636) TCGA-LN-A7HY-01 3 129304794 129304794 C G PLXND1 Splice_Site p.X617_splice 0.15 TCGA-LN-A7HY-01 3 133913932 133913932 T C RYK Missense_Mutation p.I293V 0.22 tolerated(0.85) benign(0.002) TCGA-LN-A7HY-01 3 13670421 13670421 G A FBLN2 Silent p.T862T 0.36 TCGA-LN-A7HY-01 3 138341108 138341108 A G FAIM Missense_Mutation p.T98A 0.39 tolerated(0.21) benign(0.011) TCGA-LN-A7HY-01 3 141006278 141006278 G A ACPL2 Missense_Mutation p.G163E 0.17 deleterious(0) probably_damaging(1) TCGA-LN-A7HY-01 3 143551002 143551002 A C SLC9A9 Silent p.T79T 0.11 TCGA-LN-A7HY-01 3 147120593 147120593 T C ZIC4 Missense_Mutation p.S48G 0.06 tolerated_low_confidence(0.32) benign(0.001) TCGA-LN-A7HY-01 3 185245348 185245348 G C LIPH Missense_Mutation p.F184L 0.71 deleterious(0) probably_damaging(0.936) TCGA-LN-A7HY-01 3 185634782 185634782 A T TRA2B 3'UTR 0.22 TCGA-LN-A7HY-01 3 33906852 33906852 C G PDCD6IP Missense_Mutation p.Q793E 0.56 tolerated(0.4) benign(0) TCGA-LN-A7HY-01 3 39307268 39307268 T C CX3CR1 Missense_Mutation p.T277A 0.58 tolerated(0.27) possibly_damaging(0.599) TCGA-LN-A7HY-01 3 52003994 52003994 C G ABHD14B Missense_Mutation p.D140H 0.58 deleterious(0.05) possibly_damaging(0.892) TCGA-LN-A7HY-01 3 73433779 73433779 G A PDZRN3 Silent p.F646F 0.57 TCGA-LN-A7HY-01 3 9739484 9739484 G A MTMR14 Missense_Mutation p.R568Q 0.31 tolerated(0.76) possibly_damaging(0.885) TCGA-LN-A7HY-01 3 98073474 98073474 T C OR5K4 Silent p.I259I 0.39 TCGA-LN-A7HY-01 4 13335101 13335117 AAACAACATTCAGCAAG T HSP90AB2P 5'Flank 0.25 TCGA-LN-A7HY-01 4 140282928 140282928 G C NAA15 Missense_Mutation p.M530I 0.36 deleterious(0.03) probably_damaging(0.998) TCGA-LN-A7HY-01 4 151357951 151357951 A T LRBA Missense_Mutation p.D2293E 0.20 tolerated(0.08) possibly_damaging(0.557) TCGA-LN-A7HY-01 4 158256846 158256846 G C GRIA2 Missense_Mutation p.K430N 0.39 deleterious(0.03) probably_damaging(1) TCGA-LN-A7HY-01 4 159493861 159493861 G A RXFP1 Missense_Mutation p.G21S 0.27 tolerated(1) benign(0) TCGA-LN-A7HY-01 4 175897785 175897785 G T ADAM29 Missense_Mutation p.S370I 0.14 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HY-01 4 189063453 189063453 A T TRIML1 Missense_Mutation p.K184N 0.12 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HY-01 4 70823225 70823225 G T CSN2 Missense_Mutation p.P148T 0.26 deleterious(0.04) probably_damaging(0.975) TCGA-LN-A7HY-01 4 77661903 77661903 C G SHROOM3 Silent p.S859S 0.35 TCGA-LN-A7HY-01 4 78638271 78638271 G C CNOT6L 3'UTR 0.29 TCGA-LN-A7HY-01 5 122359198 122359198 A G PPIC 3'UTR 0.49 TCGA-LN-A7HY-01 5 13719067 13719067 T C DNAH5 Silent p.T4141T 0.19 TCGA-LN-A7HY-01 5 13719141 13719141 T A DNAH5 Missense_Mutation p.I4117L 0.27 benign(0.001) TCGA-LN-A7HY-01 5 145719130 145719130 G A POU4F3 Missense_Mutation p.G47E 0.59 deleterious(0.02) possibly_damaging(0.457) TCGA-LN-A7HY-01 5 14610525 14610525 T A FAM105A 3'UTR 0.26 TCGA-LN-A7HY-01 5 21760720 21760720 C G CDH12 Missense_Mutation p.R527T 0.05 tolerated(0.17) benign(0.014) TCGA-LN-A7HY-01 5 24487458 24487458 C T CDH10 3'UTR 0.07 TCGA-LN-A7HY-01 5 58289273 58289273 C T PDE4D Missense_Mutation p.R314Q 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.877) TCGA-LN-A7HY-01 5 58511631 58511631 A G PDE4D Missense_Mutation p.S207P 0.36 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-LN-A7HY-01 5 68665376 68665376 G C TAF9 Intron 0.78 TCGA-LN-A7HY-01 6 101099510 101099510 G C ASCC3 Missense_Mutation p.L1001V 0.23 tolerated(0.05) benign(0.026) TCGA-LN-A7HY-01 6 126210540 126210540 G A NCOA7 Missense_Mutation p.R447Q 0.07 tolerated_low_confidence(0.61) benign(0.001) TCGA-LN-A7HY-01 6 127834136 127834136 C A SOGA3 Missense_Mutation p.R462I 0.35 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HY-01 6 146243864 146243864 T C SHPRH Silent p.P1218P 0.17 TCGA-LN-A7HY-01 6 163956011 163956011 T A QKI Intron 0.16 TCGA-LN-A7HY-01 6 168461507 168461507 C T FRMD1 Missense_Mutation p.E426K 0.37 tolerated(0.14) benign(0.021) TCGA-LN-A7HY-01 6 26045940 26045940 T A HIST1H3C Missense_Mutation p.L101Q 0.40 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-LN-A7HY-01 6 27115271 27115271 G C HIST1H2AH Missense_Mutation p.E122Q 0.38 tolerated_low_confidence(0.07) benign(0.032) TCGA-LN-A7HY-01 6 29012660 29012660 A T OR2W1 Missense_Mutation p.I98N 0.58 deleterious(0) benign(0.248) TCGA-LN-A7HY-01 6 31783686 31783686 C T HSPA1A Silent p.I51I 0.64 TCGA-LN-A7HY-01 6 41754765 41754771 AGGATTT - PRICKLE4 Frame_Shift_Del p.E351Dfs*3 0.16 TCGA-LN-A7HY-01 6 46658264 46658264 C G TDRD6 Missense_Mutation p.T800S 0.32 tolerated(0.22) benign(0.034) TCGA-LN-A7HY-01 6 71666093 71666093 G A B3GAT2 Missense_Mutation p.P14S 0.38 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HY-01 6 7880462 7880462 G A BMP6 Silent p.P476P 0.08 TCGA-LN-A7HY-01 6 96655745 96655745 G T FUT9 3'UTR 0.33 TCGA-LN-A7HY-01 7 105189044 105189044 T C RINT1 Missense_Mutation p.S295P 0.26 tolerated(0.26) benign(0.001) TCGA-LN-A7HY-01 7 11068417 11068417 G T PHF14 Missense_Mutation p.G476V 0.33 deleterious(0) probably_damaging(1) TCGA-LN-A7HY-01 7 111366639 111366639 C G DOCK4 3'Flank 0.25 TCGA-LN-A7HY-01 7 147092722 147092722 A C CNTNAP2 Missense_Mutation p.N507T 0.24 tolerated(0.42) benign(0.008) TCGA-LN-A7HY-01 7 151711785 151711785 C A GALNTL5 Silent p.I361I 0.25 TCGA-LN-A7HY-01 7 20766663 20766663 A G ABCB5 Missense_Mutation p.I876V 0.32 tolerated(0.2) benign(0.028) TCGA-LN-A7HY-01 7 23165551 23165551 G A KLHL7 Intron 0.20 TCGA-LN-A7HY-01 7 2581386 2581386 C T BRAT1 Missense_Mutation p.R367H 0.07 deleterious(0.05) benign(0.007) TCGA-LN-A7HY-01 7 30491759 30491759 A C NOD1 Missense_Mutation p.F425C 0.67 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HY-01 7 31003737 31003737 G C GHRHR Silent p.P18P 0.29 TCGA-LN-A7HY-01 7 43602253 43602253 G T HECW1 3'UTR 0.29 TCGA-LN-A7HY-01 7 44924094 44924094 C A PURB Missense_Mutation p.R285L 0.26 tolerated(0.1) possibly_damaging(0.518) TCGA-LN-A7HY-01 7 45754245 45754245 G A ADCY1 3'UTR 0.10 TCGA-LN-A7HY-01 7 53103931 53103931 C A POM121L12 Missense_Mutation p.S189R 0.15 tolerated(0.89) probably_damaging(0.933) TCGA-LN-A7HY-01 7 7628156 7628156 A G MIOS Missense_Mutation p.R616G 0.11 deleterious(0) probably_damaging(0.996) TCGA-LN-A7HY-01 7 98649881 98649881 G A SMURF1 Missense_Mutation p.T223M 0.22 tolerated(0.11) benign(0.078) TCGA-LN-A7HY-01 8 113563014 113563014 C A CSMD3 Nonsense_Mutation p.E1484* 0.30 TCGA-LN-A7HY-01 8 124358392 124358392 T C ATAD2 Silent p.V822V 0.41 TCGA-LN-A7HY-01 8 146105601 146105601 C A ZNF250 3'UTR 0.43 TCGA-LN-A7HY-01 8 53025816 53025816 G A ST18 Missense_Mutation p.P1029L 0.46 deleterious(0) probably_damaging(1) TCGA-LN-A7HY-01 8 59718243 59718243 G C TOX 3'UTR 0.22 TCGA-LN-A7HY-01 8 89046539 89046539 C T MMP16 3'UTR 0.36 TCGA-LN-A7HY-01 9 106860801 106860801 C T SMC2 Silent p.F131F 0.65 TCGA-LN-A7HY-01 9 110092988 110092988 T G RAD23B 3'UTR 0.59 TCGA-LN-A7HY-01 9 117386549 117386549 G A C9orf91 Intron 0.61 TCGA-LN-A7HY-01 9 130286098 130286098 G A FAM129B Missense_Mutation p.P150L 0.56 deleterious(0.01) probably_damaging(0.956) TCGA-LN-A7HY-01 9 130742450 130742450 G A FAM102A 5'UTR 0.67 TCGA-LN-A7HY-01 9 35609251 35609251 G A TESK1 Missense_Mutation p.E465K 0.22 tolerated(0.34) benign(0.03) TCGA-LN-A7HY-01 9 84249102 84249102 C T TLE1 Missense_Mutation p.G163S 0.05 tolerated(0.12) benign(0.01) TCGA-LN-A7HY-01 9 95947766 95947766 C T WNK2 Silent p.A185A 0.64 TCGA-LN-A7HY-01 X 10104670 10104670 C T WWC3 Intron 0.58 TCGA-LN-A7HY-01 X 111155531 111155531 G A TRPC5 Silent p.Y296Y 0.85 TCGA-LN-A7HY-01 X 153287556 153287556 C T IRAK1 5'Flank 0.79 TCGA-LN-A7HY-01 X 153697205 153697205 A T PLXNA3 Missense_Mutation p.I1443F 0.71 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HY-01 X 15525518 15525518 T A BMX Intron 0.70 TCGA-LN-A7HY-01 X 77223837 77223837 C T PGAM4 3'UTR 0.82 TCGA-LN-A7HY-01 X 78216849 78216849 C T P2RY10 Missense_Mutation p.P278S 0.71 tolerated(0.97) benign(0.002) TCGA-LN-A7HZ-01 10 114220329 114220329 A G VTI1A Silent p.E47E 0.17 TCGA-LN-A7HZ-01 10 116931078 116931078 T C ATRNL1 Intron 0.15 TCGA-LN-A7HZ-01 10 54531301 54531301 C A MBL2 Missense_Mutation p.C32F 0.35 deleterious(0.01) probably_damaging(1) TCGA-LN-A7HZ-01 10 58118341 58118341 C T ZWINT Silent p.G256G 0.44 TCGA-LN-A7HZ-01 10 72058732 72058732 G A LRRC20 3'UTR 0.21 TCGA-LN-A7HZ-01 10 88415912 88415912 G A OPN4 Missense_Mutation p.A49T 0.43 tolerated(0.08) benign(0.023) TCGA-LN-A7HZ-01 10 96117718 96117718 T C NOC3L Intron 0.47 TCGA-LN-A7HZ-01 10 98281367 98281367 G C TM9SF3 3'UTR 0.05 TCGA-LN-A7HZ-01 11 16071402 16071402 T C SOX6 Missense_Mutation p.Q445R 0.49 tolerated(0.33) possibly_damaging(0.457) TCGA-LN-A7HZ-01 11 7060994 7060994 A G NLRP14 Silent p.Q113Q 0.46 TCGA-LN-A7HZ-01 11 93463064 93463064 G A KIAA1731 Silent p.V2532V 0.21 TCGA-LN-A7HZ-01 12 109670566 109670566 G A ACACB Missense_Mutation p.R1365H 0.19 deleterious(0) probably_damaging(1) TCGA-LN-A7HZ-01 12 113717958 113717958 A G TPCN1 Missense_Mutation p.I506V 0.38 tolerated(0.19) benign(0.045) TCGA-LN-A7HZ-01 12 43833503 43833503 T C ADAMTS20 Missense_Mutation p.I839V 0.40 tolerated(0.19) benign(0.065) TCGA-LN-A7HZ-01 12 49435700 49435700 C T KMT2D Silent p.L2061L 0.45 TCGA-LN-A7HZ-01 12 51634874 51634874 G A DAZAP2 Intron 0.16 TCGA-LN-A7HZ-01 12 68720467 68720467 G T MDM1 Silent p.T156T 0.31 TCGA-LN-A7HZ-01 13 51948408 51948408 T - INTS6 Frame_Shift_Del p.G681Dfs*30 0.12 TCGA-LN-A7HZ-01 13 66877032 66877032 T G PCDH9 3'UTR 0.41 TCGA-LN-A7HZ-01 13 99890703 99890703 C - UBAC2 Frame_Shift_Del p.L19Ffs*39 0.19 TCGA-LN-A7HZ-01 14 21238744 21238744 C T EDDM3B Silent p.I145I 0.08 TCGA-LN-A7HZ-01 14 55819192 55819192 A T FBXO34 Missense_Mutation p.N695I 0.31 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HZ-01 14 64151387 64151387 T A SGPP1 3'UTR 0.35 TCGA-LN-A7HZ-01 14 80663936 80663936 C G DIO2 3'UTR 0.11 TCGA-LN-A7HZ-01 15 42825202 42825202 A G SNAP23 3'UTR 0.31 TCGA-LN-A7HZ-01 15 65218355 65218355 G C ANKDD1A Missense_Mutation p.D153H 0.26 deleterious(0) probably_damaging(0.996) TCGA-LN-A7HZ-01 15 74653949 74653949 G A CYP11A1 Intron 0.05 TCGA-LN-A7HZ-01 15 91500556 91500556 G C RCCD1 Missense_Mutation p.G127A 0.56 tolerated(0.36) benign(0.001) TCGA-LN-A7HZ-01 16 30129434 30129434 G A MAPK3 Silent p.T198T 0.25 TCGA-LN-A7HZ-01 16 31088787 31088787 G A ZNF646 Missense_Mutation p.R381H 0.64 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HZ-01 16 49557603 49557603 C T ZNF423 Missense_Mutation p.G1253R 0.50 deleterious(0) probably_damaging(0.997) TCGA-LN-A7HZ-01 16 67324844 67324844 T C KCTD19 Missense_Mutation p.I871V 0.16 tolerated(0.21) benign(0) TCGA-LN-A7HZ-01 16 86544572 86544572 G A FOXF1 Missense_Mutation p.E133K 0.74 deleterious(0.01) probably_damaging(0.997) TCGA-LN-A7HZ-01 17 10267795 10267795 C T MYH13 Missense_Mutation p.R18Q 0.68 deleterious(0.01) probably_damaging(0.974) TCGA-LN-A7HZ-01 17 37566857 37566857 G A MED1 Silent p.N539N 0.48 TCGA-LN-A7HZ-01 17 42154296 42154299 AGGC - HDAC5 3'UTR 0.44 TCGA-LN-A7HZ-01 17 57109426 57109426 G A TRIM37 Silent p.S593S 0.07 TCGA-LN-A7HZ-01 17 7578191 7578191 A C TP53 Missense_Mutation p.Y220D 0.75 deleterious(0) probably_damaging(1) TCGA-LN-A7HZ-01 18 19231047 19231047 T C ABHD3 3'UTR 0.22 TCGA-LN-A7HZ-01 18 203180 203180 A G USP14 Missense_Mutation p.K342R 0.51 deleterious(0.03) possibly_damaging(0.77) TCGA-LN-A7HZ-01 18 31432214 31432214 T A NOL4 3'UTR 0.11 TCGA-LN-A7HZ-01 19 10157403 10157403 C T C3P1 Intron 0.17 TCGA-LN-A7HZ-01 19 11942659 11942659 C G ZNF440 Missense_Mutation p.T223S 0.22 tolerated(0.1) benign(0.37) TCGA-LN-A7HZ-01 19 12146500 12146500 C G ZNF433 5'UTR 0.17 TCGA-LN-A7HZ-01 19 14034533 14034533 A C CC2D1A Missense_Mutation p.K617Q 0.52 deleterious(0.02) benign(0.394) TCGA-LN-A7HZ-01 19 18367981 18367981 G T KIAA1683 3'UTR 0.49 TCGA-LN-A7HZ-01 19 20045338 20045338 T C ZNF93 Missense_Mutation p.I525T 0.16 tolerated(1) benign(0.002) TCGA-LN-A7HZ-01 19 2213592 2213592 G A DOT1L Missense_Mutation p.A538T 0.56 deleterious(0.04) benign(0.028) TCGA-LN-A7HZ-01 19 22271020 22271020 G A ZNF257 Silent p.K156K 0.05 TCGA-LN-A7HZ-01 19 33791684 33791684 G T CEBPA 3'UTR 0.44 TCGA-LN-A7HZ-01 19 42411345 42411345 G T ARHGEF1 3'UTR 0.45 TCGA-LN-A7HZ-01 19 6433618 6433618 G A SLC25A41 Silent p.A29A 0.48 TCGA-LN-A7HZ-01 19 7684915 7684915 C A XAB2 Silent p.L771L 0.19 TCGA-LN-A7HZ-01 1 119427370 119427370 G A TBX15 Silent p.S492S 0.11 TCGA-LN-A7HZ-01 1 152276849 152276849 G A FLG Missense_Mutation p.H3505Y 0.37 unknown(0) TCGA-LN-A7HZ-01 1 155883705 155883705 T C KIAA0907 3'UTR 0.62 TCGA-LN-A7HZ-01 1 169513654 169513654 T G F5 Missense_Mutation p.N619H 0.16 deleterious(0.01) possibly_damaging(0.861) TCGA-LN-A7HZ-01 1 171688314 171688314 T C VAMP4 Missense_Mutation p.K54R 0.69 tolerated(0.56) benign(0.011) TCGA-LN-A7HZ-01 1 215901650 215901650 C G USH2A Missense_Mutation p.D3930H 0.05 benign(0.365) TCGA-LN-A7HZ-01 1 237617836 237617836 C T RYR2 Nonsense_Mutation p.R480* 0.80 TCGA-LN-A7HZ-01 1 242015637 242015637 C A EXO1 Missense_Mutation p.H69N 0.24 tolerated(0.25) benign(0.016) TCGA-LN-A7HZ-01 1 247463850 247463850 G A ZNF496 Missense_Mutation p.R579C 0.16 deleterious(0) benign(0.106) TCGA-LN-A7HZ-01 1 40033068 40033068 C A PABPC4 Intron 0.71 TCGA-LN-A7HZ-01 1 67109265 67109267 GAA - SGIP1 In_Frame_Del p.E112del 0.68 TCGA-LN-A7HZ-01 20 2378611 2378611 C T TGM6 Silent p.S197S 0.46 TCGA-LN-A7HZ-01 20 34238183 34238183 G A RBM12 3'UTR 0.33 TCGA-LN-A7HZ-01 20 61947988 61947988 G T COL20A1 Missense_Mutation p.G870C 0.34 deleterious(0.01) possibly_damaging(0.597) TCGA-LN-A7HZ-01 21 41414321 41414321 G A DSCAM Missense_Mutation p.A1888V 0.64 deleterious(0) probably_damaging(0.999) TCGA-LN-A7HZ-01 22 21801761 21801761 C T HIC2 3'UTR 0.65 TCGA-LN-A7HZ-01 2 100199307 100199307 T C AFF3 Missense_Mutation p.K941E 0.35 tolerated(0.09) benign(0.007) TCGA-LN-A7HZ-01 2 11966193 11966193 A G LPIN1 3'Flank 0.08 TCGA-LN-A7HZ-01 2 152435902 152435902 C T NEB Missense_Mutation p.D5552N 0.17 probably_damaging(0.997) TCGA-LN-A7HZ-01 2 178098810 178098810 C G NFE2L2 Missense_Mutation p.E79Q 0.50 deleterious(0) probably_damaging(1) TCGA-LN-A7HZ-01 2 179597727 179597727 C G TTN Missense_Mutation p.K5392N 0.21 TCGA-LN-A7HZ-01 3 123356985 123356985 C A MYLK Missense_Mutation p.V1632L 0.44 deleterious(0) benign(0.218) TCGA-LN-A7HZ-01 3 124393469 124393469 C T KALRN Intron 0.35 TCGA-LN-A7HZ-01 3 12966156 12966156 C T IQSEC1 Missense_Mutation p.R566H 0.71 deleterious(0) probably_damaging(1) TCGA-LN-A7HZ-01 3 182662584 182662584 T C DCUN1D1 3'UTR 0.13 TCGA-LN-A7HZ-01 3 186287935 186287935 G C TBCCD1 5'UTR 0.27 TCGA-LN-A7HZ-01 3 30713885 30713885 C G TGFBR2 Missense_Mutation p.L429V 0.80 deleterious(0) probably_damaging(0.98) TCGA-LN-A7HZ-01 3 32932232 32932232 C T TRIM71 Silent p.H512H 0.29 TCGA-LN-A7HZ-01 3 5025110 5025110 C T BHLHE40 Silent p.P324P 0.06 TCGA-LN-A7HZ-01 4 110972000 110972000 A G ELOVL6 3'UTR 0.55 TCGA-LN-A7HZ-01 4 134072084 134072084 T C PCDH10 Silent p.S263S 0.12 TCGA-LN-A7HZ-01 4 160259537 160259537 T G RAPGEF2 Missense_Mutation p.L576W 0.74 deleterious(0.01) possibly_damaging(0.827) TCGA-LN-A7HZ-01 4 37447948 37447948 C T KIAA1239 Silent p.S1446S 0.14 TCGA-LN-A7HZ-01 4 47560156 47560156 T G ATP10D Missense_Mutation p.L767R 0.44 deleterious(0) probably_damaging(0.99) TCGA-LN-A7HZ-01 4 71275204 71275204 T A PROL1 Nonsense_Mutation p.Y53* 0.66 TCGA-LN-A7HZ-01 4 71275205 71275205 G A PROL1 Missense_Mutation p.D54N 0.68 tolerated_low_confidence(0.32) benign(0.001) TCGA-LN-A7HZ-01 4 71895288 71895288 A T DCK 3'UTR 0.67 TCGA-LN-A7HZ-01 5 135692820 135692820 C T TRPC7 Missense_Mutation p.V86M 0.68 deleterious(0) probably_damaging(0.998) TCGA-LN-A7HZ-01 6 132031717 132031717 G T CTAGE9 Silent p.L147L 0.23 TCGA-LN-A7HZ-01 6 132271549 132271549 G T CTGF Missense_Mutation p.R142S 0.57 tolerated(0.69) benign(0.34) TCGA-LN-A7HZ-01 6 152424207 152424207 A G ESR1 3'UTR 0.30 TCGA-LN-A7HZ-01 6 159653096 159653096 G - FNDC1 Frame_Shift_Del p.A519Rfs*48 0.42 TCGA-LN-A7HZ-01 6 35773672 35773672 C T LHFPL5 Silent p.S75S 0.25 TCGA-LN-A7HZ-01 6 99322298 99322298 C G FBXL4 Silent p.P574P 0.27 TCGA-LN-A7HZ-01 7 141705417 141705417 T C MGAM Silent p.V29V 0.11 TCGA-LN-A7HZ-01 7 149250069 149250069 G A ZNF767 RNA 0.36 TCGA-LN-A7HZ-01 7 151947037 151947037 C T KMT2C Silent p.A579A 0.27 TCGA-LN-A7HZ-01 7 42000951 42000951 G A GLI3 3'UTR 0.29 TCGA-LN-A7HZ-01 7 6803577 6803577 G C RSPH10B2 Missense_Mutation p.V140L 0.08 tolerated(0.08) benign(0.046) TCGA-LN-A7HZ-01 7 75047748 75047748 G A POM121C 3'UTR 0.44 TCGA-LN-A7HZ-01 7 77762345 77762345 C G MAGI2 Missense_Mutation p.E1022Q 0.40 tolerated(0.06) probably_damaging(0.974) TCGA-LN-A7HZ-01 7 86509556 86509556 G C KIAA1324L 3'UTR 0.25 TCGA-LN-A7HZ-01 9 116393 116393 G C FOXD4 3'UTR 0.32 TCGA-LN-A7HZ-01 9 123199725 123199725 A G CDK5RAP2 Missense_Mutation p.V1268A 0.14 tolerated(0.18) possibly_damaging(0.539) TCGA-LN-A7HZ-01 9 123366708 123366710 ACA - MEGF9 3'UTR 0.83 TCGA-LN-A7HZ-01 9 125611809 125611809 A T RC3H2 3'UTR 0.44 TCGA-LN-A7HZ-01 9 136627369 136627369 T A VAV2 3'UTR 0.05 TCGA-LN-A7HZ-01 9 4585805 4585806 TA - SLC1A1 3'UTR 0.47 TCGA-LN-A7HZ-01 9 74969292 74969292 T C ZFAND5 3'UTR 0.86 TCGA-LN-A7HZ-01 9 80944123 80944123 C A PSAT1 3'UTR 0.82 TCGA-LN-A7HZ-01 X 73958682 73958682 T C KIAA2022 3'UTR 0.08 TCGA-LN-A8HZ-01 10 105762241 105762241 C T SLK Silent p.D435D 0.37 TCGA-LN-A8HZ-01 10 118708448 118708448 C T KIAA1598 Missense_Mutation p.V199I 0.09 tolerated(0.28) benign(0.068) TCGA-LN-A8HZ-01 10 119013563 119013563 T C SLC18A2 Silent p.F176F 0.09 TCGA-LN-A8HZ-01 10 124249128 124249128 A G HTRA1 Missense_Mutation p.K255E 0.36 deleterious(0.03) benign(0.344) TCGA-LN-A8HZ-01 10 18966210 18966210 A G ARL5B 3'UTR 0.11 TCGA-LN-A8HZ-01 10 34558748 34558748 T A PARD3 Missense_Mutation p.T1089S 0.11 tolerated(0.25) benign(0.129) TCGA-LN-A8HZ-01 10 88469744 88469744 G A LDB3 Missense_Mutation p.A395T 0.47 tolerated(0.25) benign(0.11) TCGA-LN-A8HZ-01 10 93809608 93809608 T C CPEB3 3'UTR 0.28 TCGA-LN-A8HZ-01 11 5655862 5655862 A T TRIM34 Missense_Mutation p.Y174F 0.21 tolerated(0.18) benign(0.001) TCGA-LN-A8HZ-01 11 5809136 5809136 T C OR52N1 Missense_Mutation p.E304G 0.32 deleterious(0.05) benign(0.14) TCGA-LN-A8HZ-01 11 66276857 66276857 T C DPP3 3'UTR 0.27 TCGA-LN-A8HZ-01 11 71260187 71260187 C G KRTAP5-9 Missense_Mutation p.P162A 0.12 deleterious_low_confidence(0) unknown(0) TCGA-LN-A8HZ-01 11 71810295 71810295 T C LAMTOR1 Missense_Mutation p.E17G 0.37 deleterious(0.04) benign(0.006) TCGA-LN-A8HZ-01 12 10464159 10464159 A T KLRD1 Missense_Mutation p.H87L 0.35 tolerated(0.05) benign(0.028) TCGA-LN-A8HZ-01 12 123200854 123200854 G A HCAR3 Missense_Mutation p.A144V 0.09 deleterious(0.04) probably_damaging(0.999) TCGA-LN-A8HZ-01 12 133295362 133295362 T C PGAM5 Intron 0.33 TCGA-LN-A8HZ-01 12 13529163 13529163 C A C12orf36 Silent p.L59L 0.34 TCGA-LN-A8HZ-01 12 49432030 49432030 G - KMT2D Frame_Shift_Del p.H3037Tfs*34 0.28 TCGA-LN-A8HZ-01 12 53878119 53878119 G C MAP3K12 Missense_Mutation p.F390L 0.10 deleterious(0) probably_damaging(0.999) TCGA-LN-A8HZ-01 12 57390113 57390113 G A GPR182 Missense_Mutation p.A374T 0.43 tolerated_low_confidence(0.35) benign(0) TCGA-LN-A8HZ-01 13 25155856 25155856 C A RP11-556N21.1 RNA 0.12 TCGA-LN-A8HZ-01 14 21864038 21864038 T A CHD8 Nonsense_Mutation p.K1689* 0.08 TCGA-LN-A8HZ-01 14 39868350 39868350 A - FBXO33 3'UTR 0.13 TCGA-LN-A8HZ-01 14 60494606 60494606 T A LRRC9 Missense_Mutation p.N1236K 0.25 deleterious(0.01) possibly_damaging(0.907) TCGA-LN-A8HZ-01 14 64691245 64691245 G T SYNE2 Missense_Mutation p.V6817L 0.55 benign(0.009) TCGA-LN-A8HZ-01 14 90764706 90764706 A G NRDE2 Missense_Mutation p.F522L 0.09 deleterious(0) probably_damaging(0.934) TCGA-LN-A8HZ-01 15 41071496 41071496 T G DNAJC17 Missense_Mutation p.K74Q 0.31 tolerated(0.09) benign(0.21) TCGA-LN-A8HZ-01 15 63966633 63966633 C T HERC1 Missense_Mutation p.G2585E 0.32 benign(0.357) TCGA-LN-A8HZ-01 15 65916671 65916671 G A SLC24A1 Missense_Mutation p.E85K 0.11 benign(0) TCGA-LN-A8HZ-01 15 75586142 75586142 G A GOLGA6D Missense_Mutation p.V556I 0.13 tolerated(1) benign(0.001) TCGA-LN-A8HZ-01 15 90805255 90805255 C T TTLL13 3'Flank 0.34 TCGA-LN-A8HZ-01 16 1536208 1536208 C T PTX4 Missense_Mutation p.R385K 0.34 tolerated(0.06) benign(0.444) TCGA-LN-A8HZ-01 16 18549919 18549919 G A NOMO2 Silent p.H383H 0.05 TCGA-LN-A8HZ-01 16 2088572 2088572 C A SLC9A3R2 3'UTR 0.35 TCGA-LN-A8HZ-01 16 28975131 28975131 C T NFATC2IP Silent p.L403L 0.13 TCGA-LN-A8HZ-01 16 31766690 31766690 G A ZNF720 Intron 0.32 TCGA-LN-A8HZ-01 16 32266327 32266327 A G TP53TG3D 3'UTR 0.25 TCGA-LN-A8HZ-01 16 4749098 4749098 A T ANKS3 Missense_Mutation p.I455N 0.10 deleterious(0) probably_damaging(0.963) TCGA-LN-A8HZ-01 16 65038654 65038654 T C CDH11 Missense_Mutation p.E40G 0.14 tolerated(0.29) benign(0.086) TCGA-LN-A8HZ-01 16 67672857 67672857 T A CTCF 3'UTR 0.27 TCGA-LN-A8HZ-01 16 72831852 72831852 G A ZFHX3 Missense_Mutation p.L1577F 0.36 probably_damaging(0.994) TCGA-LN-A8HZ-01 16 75665431 75665431 C T KARS Missense_Mutation p.E407K 0.12 tolerated(0.12) benign(0.271) TCGA-LN-A8HZ-01 17 15950318 15950318 T A NCOR1 Missense_Mutation p.K2209M 0.65 probably_damaging(0.998) TCGA-LN-A8HZ-01 17 39261661 39261661 C G KRTAP4-9 Silent p.G7G 0.45 TCGA-LN-A8HZ-01 17 48050491 48050491 C A DLX4 Missense_Mutation p.P113H 0.37 tolerated(0.11) benign(0.168) TCGA-LN-A8HZ-01 17 62543830 62543830 G A SMURF2 Silent p.V653V 0.45 TCGA-LN-A8HZ-01 17 7574035 7574035 T G TP53 Splice_Site p.X332_splice 0.70 TCGA-LN-A8HZ-01 17 7818793 7818793 G T CHD3 3'Flank 0.57 TCGA-LN-A8HZ-01 17 8793372 8793372 G A PIK3R5 Silent p.I243I 0.54 TCGA-LN-A8HZ-01 18 121622 121623 - T ROCK1P1 RNA 0.17 TCGA-LN-A8HZ-01 18 19378178 19378178 A G MIB1 Missense_Mutation p.N409S 0.21 tolerated(0.31) benign(0.004) TCGA-LN-A8HZ-01 18 29410100 29410100 T A TRAPPC8 3'UTR 0.29 TCGA-LN-A8HZ-01 18 34850767 34850767 C T CELF4 Missense_Mutation p.E355K 0.26 tolerated(0.13) possibly_damaging(0.665) TCGA-LN-A8HZ-01 19 11100104 11100104 G A SMARCA4 Silent p.L410L 0.06 TCGA-LN-A8HZ-01 19 51919988 51919988 A T SIGLEC10 Missense_Mutation p.L213H 0.06 deleterious(0) probably_damaging(0.99) TCGA-LN-A8HZ-01 19 52249357 52249357 G C FPR1 Missense_Mutation p.N297K 0.13 deleterious(0) probably_damaging(1) TCGA-LN-A8HZ-01 19 54379566 54379566 T A MYADM 3'UTR 0.07 TCGA-LN-A8HZ-01 19 6534855 6534855 G C TNFSF9 Missense_Mutation p.L181F 0.25 deleterious(0.02) probably_damaging(0.993) TCGA-LN-A8HZ-01 19 9067553 9067553 G T MUC16 Missense_Mutation p.D6631E 0.61 unknown(0) TCGA-LN-A8HZ-01 1 120438560 120438560 G T ADAM30 Silent p.R134R 0.23 TCGA-LN-A8HZ-01 1 12919952 12919952 T A PRAMEF2 Missense_Mutation p.M231K 0.05 deleterious(0.01) probably_damaging(0.974) TCGA-LN-A8HZ-01 1 144917554 144917554 T A PDE4DIP Missense_Mutation p.D517V 0.16 deleterious(0) possibly_damaging(0.907) TCGA-LN-A8HZ-01 1 152185648 152185648 A C HRNR Missense_Mutation p.H2819Q 0.06 unknown(0) TCGA-LN-A8HZ-01 1 152281918 152281918 C T FLG Missense_Mutation p.G1815E 0.06 probably_damaging(0.931) TCGA-LN-A8HZ-01 1 155707999 155708000 - CT DAP3 Frame_Shift_Ins p.L390Rfs*32 0.27 TCGA-LN-A8HZ-01 1 158225961 158225961 C A CD1A Missense_Mutation p.L165I 0.37 tolerated(0.57) benign(0.003) TCGA-LN-A8HZ-01 1 186324664 186324664 T A TPR Missense_Mutation p.K683N 0.49 benign(0.403) TCGA-LN-A8HZ-01 1 186643414 186643414 T C PTGS2 3'UTR 0.39 TCGA-LN-A8HZ-01 1 18692016 18692016 C T IGSF21 Silent p.S280S 0.48 TCGA-LN-A8HZ-01 1 197126993 197126993 G T ZBTB41 3'UTR 0.23 TCGA-LN-A8HZ-01 1 216052369 216052369 G A USH2A Silent p.H2765H 0.14 TCGA-LN-A8HZ-01 1 224574143 224574144 - A WDR26 3'UTR 0.23 TCGA-LN-A8HZ-01 1 231403505 231403505 G C GNPAT Missense_Mutation p.E379Q 0.45 tolerated(0.25) benign(0.035) TCGA-LN-A8HZ-01 1 34024948 34024948 G T CSMD2 Intron 0.22 TCGA-LN-A8HZ-01 1 43770718 43770718 G A TIE1 Silent p.S85S 0.08 TCGA-LN-A8HZ-01 1 87810542 87810542 A G LMO4 3'UTR 0.43 TCGA-LN-A8HZ-01 20 1919068 1919072 TGTTT - SIRPA 3'UTR 0.30 TCGA-LN-A8HZ-01 20 30154016 30154016 G A HM13 Missense_Mutation p.A318T 0.33 deleterious(0) probably_damaging(0.987) TCGA-LN-A8HZ-01 20 31756970 31756970 C T BPIFA2 Missense_Mutation p.L7F 0.22 deleterious(0.04) benign(0.101) TCGA-LN-A8HZ-01 20 45014797 45014797 T C ELMO2 Missense_Mutation p.I215V 0.37 tolerated(1) benign(0.024) TCGA-LN-A8HZ-01 20 47897085 47897086 AT - ZNFX1 5'Flank 0.24 TCGA-LN-A8HZ-01 22 37769104 37769104 G - ELFN2 3'UTR 0.21 TCGA-LN-A8HZ-01 22 42522969 42522969 G A CYP2D6 Missense_Mutation p.S400L 0.24 deleterious(0) possibly_damaging(0.778) TCGA-LN-A8HZ-01 22 51009414 51009414 C T CPT1B Missense_Mutation p.R645H 0.31 deleterious(0.02) benign(0.43) TCGA-LN-A8HZ-01 22 51016363 51016363 C T CPT1B Intron 0.15 TCGA-LN-A8HZ-01 2 108488905 108488905 G A RGPD4 Missense_Mutation p.S1482N 0.36 tolerated(0.66) benign(0.003) TCGA-LN-A8HZ-01 2 121106886 121106886 C T INHBB Silent p.D220D 0.28 TCGA-LN-A8HZ-01 2 137814518 137814518 C A THSD7B Nonsense_Mutation p.S223* 0.53 TCGA-LN-A8HZ-01 2 16085955 16085955 G A MYCN Silent p.S377S 0.09 TCGA-LN-A8HZ-01 2 178098800 178098800 T C NFE2L2 Missense_Mutation p.E82G 0.52 deleterious(0) probably_damaging(1) TCGA-LN-A8HZ-01 2 220493143 220493143 A G SLC4A3 Missense_Mutation p.E23G 0.09 deleterious_low_confidence(0.01) benign(0.234) TCGA-LN-A8HZ-01 2 44559740 44559740 C A PREPL Missense_Mutation p.C404F 0.42 tolerated(0.35) benign(0.03) TCGA-LN-A8HZ-01 2 44993623 44993623 A G CAMKMT Missense_Mutation p.N273D 0.10 tolerated(0.17) benign(0.093) TCGA-LN-A8HZ-01 2 53897541 53897541 C T ASB3 3'UTR 0.18 TCGA-LN-A8HZ-01 2 61493302 61493302 C T USP34 Missense_Mutation p.E1812K 0.11 tolerated(0.32) benign(0.005) TCGA-LN-A8HZ-01 2 72358868 72358868 G A CYP26B1 3'UTR 0.23 TCGA-LN-A8HZ-01 2 99720450 99720450 T A TSGA10 Missense_Mutation p.K197N 0.05 deleterious(0) probably_damaging(0.939) TCGA-LN-A8HZ-01 3 115535488 115535488 C A LSAMP Intron 0.04 TCGA-LN-A8HZ-01 3 142266582 142266583 - A ATR Frame_Shift_Ins p.S1115Ifs*3 0.22 TCGA-LN-A8HZ-01 3 183530405 183530405 T A YEATS2 3'UTR 0.49 TCGA-LN-A8HZ-01 3 183776319 183776319 A C HTR3C Missense_Mutation p.K222Q 0.24 tolerated(0.27) benign(0.219) TCGA-LN-A8HZ-01 3 46062533 46062533 G A XCR1 Missense_Mutation p.R303W 0.10 deleterious(0.02) possibly_damaging(0.54) TCGA-LN-A8HZ-01 3 57557527 57557527 T C ARF4 3'UTR 0.60 TCGA-LN-A8HZ-01 4 10442774 10442774 C A ZNF518B 3'UTR 0.08 TCGA-LN-A8HZ-01 4 1206043 1206043 G A CTBP1 Silent p.A436A 0.55 TCGA-LN-A8HZ-01 4 152147325 152147325 G T SH3D19 5'UTR 0.42 TCGA-LN-A8HZ-01 4 24543614 24543614 A G DHX15 Missense_Mutation p.L456P 0.07 deleterious(0) probably_damaging(1) TCGA-LN-A8HZ-01 4 41749533 41749533 C A PHOX2B Missense_Mutation p.D88Y 0.12 tolerated(0.06) benign(0.406) TCGA-LN-A8HZ-01 5 115177406 115177406 C T ATG12 5'UTR 0.62 TCGA-LN-A8HZ-01 5 139876620 139876620 C T ANKHD1 Nonsense_Mutation p.Q921* 0.56 TCGA-LN-A8HZ-01 5 140229519 140229519 G A PCDHA9 Missense_Mutation p.R480Q 0.08 tolerated_low_confidence(0.07) benign(0.005) TCGA-LN-A8HZ-01 5 140503073 140503073 C T PCDHB4 Missense_Mutation p.P498L 0.21 deleterious_low_confidence(0.01) benign(0.309) TCGA-LN-A8HZ-01 5 14769157 14769157 C G ANKH Missense_Mutation p.K80N 0.18 tolerated(0.1) possibly_damaging(0.636) TCGA-LN-A8HZ-01 5 154330416 154330416 C A MRPL22 Missense_Mutation p.S38Y 0.57 deleterious(0.02) benign(0.005) TCGA-LN-A8HZ-01 5 170162928 170162928 C A KCNIP1 3'Flank 0.24 TCGA-LN-A8HZ-01 5 40934566 40934566 C T C7 Missense_Mutation p.S93L 0.12 deleterious(0) possibly_damaging(0.654) TCGA-LN-A8HZ-01 5 54516532 54516532 C A MCIDAS Missense_Mutation p.G274W 0.09 deleterious(0.01) probably_damaging(0.997) TCGA-LN-A8HZ-01 5 64878949 64878949 A G PPWD1 Missense_Mutation p.M479V 0.58 tolerated(0.56) benign(0.008) TCGA-LN-A8HZ-01 5 86637113 86637113 G T RASA1 Nonsense_Mutation p.E342* 0.22 TCGA-LN-A8HZ-01 5 98204234 98204234 C T CHD1 Missense_Mutation p.E1405K 0.23 tolerated(0.24) benign(0.066) TCGA-LN-A8HZ-01 6 133014172 133014172 T C VNN1 Missense_Mutation p.K273E 0.14 tolerated(0.37) benign(0.021) TCGA-LN-A8HZ-01 6 158516863 158516864 - CACCACCT SYNJ2 Frame_Shift_Ins p.L1323Hfs*81 0.22 TCGA-LN-A8HZ-01 6 18188156 18188156 G A KDM1B Intron 0.10 TCGA-LN-A8HZ-01 6 42652546 42652546 C A UBR2 Missense_Mutation p.S1597Y 0.07 deleterious(0.04) benign(0.063) TCGA-LN-A8HZ-01 6 43528718 43528718 T C XPO5 Silent p.P346P 0.35 TCGA-LN-A8HZ-01 6 50696619 50696619 C T TFAP2D Missense_Mutation p.R217C 0.10 deleterious(0) probably_damaging(0.999) TCGA-LN-A8HZ-01 6 71186910 71186910 G C FAM135A Missense_Mutation p.K139N 0.30 tolerated(0.15) probably_damaging(1) TCGA-LN-A8HZ-01 6 88854404 88854404 G A CNR1 Missense_Mutation p.T197M 0.29 deleterious(0) probably_damaging(0.986) TCGA-LN-A8HZ-01 7 124532386 124532386 C A POT1 Missense_Mutation p.G20C 0.08 deleterious(0) probably_damaging(0.989) TCGA-LN-A8HZ-01 7 150769142 150769142 C T SLC4A2 Silent p.F818F 0.12 TCGA-LN-A8HZ-01 7 21554016 21554016 T A SP4 3'UTR 0.11 TCGA-LN-A8HZ-01 7 48147845 48147845 G T UPP1 Missense_Mutation p.R275L 0.37 deleterious(0) probably_damaging(1) TCGA-LN-A8HZ-01 7 6066405 6066406 - AT EIF2AK1 Frame_Shift_Ins p.S573Yfs*24 0.32 TCGA-LN-A8HZ-01 7 66236988 66236988 C G RABGEF1 Missense_Mutation p.F34L 0.08 tolerated(0.61) benign(0.014) TCGA-LN-A8HZ-01 7 84679974 84679974 G T SEMA3D Intron 0.40 TCGA-LN-A8HZ-01 7 92818321 92818321 C T HEPACAM2 3'UTR 0.20 TCGA-LN-A8HZ-01 8 25285728 25285728 T C KCTD9 3'UTR 0.09 TCGA-LN-A8HZ-01 8 54730058 54730058 G C ATP6V1H Missense_Mutation p.D113E 0.32 tolerated(0.99) benign(0.429) TCGA-LN-A8HZ-01 8 75276667 75276667 G A GDAP1 3'UTR 0.10 TCGA-LN-A8HZ-01 9 106887320 106887321 - A SMC2 Frame_Shift_Ins p.L798Tfs*12 0.20 TCGA-LN-A8HZ-01 9 116931688 116931688 C T COL27A1 Missense_Mutation p.T618M 0.20 unknown(0) TCGA-LN-A8HZ-01 9 128126213 128126213 C T GAPVD1 3'Flank 0.33 TCGA-LN-A8HZ-01 9 134019964 134019964 C - NUP214 Frame_Shift_Del p.T533Pfs*38 0.12 TCGA-LN-A8HZ-01 9 139835770 139835770 G A FBXW5 Missense_Mutation p.R464C 0.38 deleterious(0) possibly_damaging(0.893) TCGA-LN-A8HZ-01 9 32433728 32433729 TG - ACO1 Frame_Shift_Del p.V619Efs*2 0.32 TCGA-LN-A8HZ-01 9 99296415 99296415 G T CDC14B Missense_Mutation p.T247N 0.70 deleterious(0) benign(0.076) TCGA-LN-A8HZ-01 X 103359001 103359001 C A ZCCHC18 Missense_Mutation p.Q67K 0.35 deleterious(0.01) possibly_damaging(0.801) TCGA-LN-A8HZ-01 X 20030525 20030525 C G MAP7D2 Missense_Mutation p.D672H 0.08 deleterious(0) unknown(0) TCGA-LN-A8HZ-01 X 77359778 77359778 C T PGK1 5'UTR 0.65 TCGA-LN-A8I0-01 10 102016226 102016226 T C CWF19L1 Silent p.K99K 0.31 TCGA-LN-A8I0-01 10 55581113 55581113 G A PCDH15 3'UTR 0.27 TCGA-LN-A8I0-01 10 69934313 69934313 C T MYPN Missense_Mutation p.R822W 0.18 tolerated(0.07) benign(0.032) TCGA-LN-A8I0-01 11 20067059 20067059 A G NAV2 Missense_Mutation p.T1272A 0.24 deleterious(0) probably_damaging(0.989) TCGA-LN-A8I0-01 11 2423907 2423907 G A TSSC4 Missense_Mutation p.G15D 0.49 deleterious(0.01) benign(0.107) TCGA-LN-A8I0-01 11 47599482 47599482 G A KBTBD4 Missense_Mutation p.R40W 0.40 deleterious(0.04) probably_damaging(0.976) TCGA-LN-A8I0-01 11 5142488 5142488 G A OR52A4 RNA 0.27 TCGA-LN-A8I0-01 11 56058080 56058080 G A OR8H1 Silent p.I153I 0.33 TCGA-LN-A8I0-01 11 56185550 56185550 A C OR5R1 Silent p.T53T 0.13 TCGA-LN-A8I0-01 11 6220894 6220894 T C OR52W1 Silent p.G147G 0.25 TCGA-LN-A8I0-01 11 67234982 67234984 TGT - TMEM134 In_Frame_Del p.N106del 0.31 TCGA-LN-A8I0-01 12 104063385 104063385 C A STAB2 Missense_Mutation p.P747T 0.24 deleterious(0.03) probably_damaging(0.998) TCGA-LN-A8I0-01 12 109675179 109675179 C T ACACB Silent p.I1552I 0.20 TCGA-LN-A8I0-01 12 120779721 120779721 C T MSI1 3'UTR 0.15 TCGA-LN-A8I0-01 12 31477712 31477712 G A AC024940.1 5'UTR 0.14 TCGA-LN-A8I0-01 13 108518145 108518145 G C FAM155A Missense_Mutation p.A267G 0.29 deleterious(0) probably_damaging(0.941) TCGA-LN-A8I0-01 13 94482729 94482729 C A GPC6 Silent p.A214A 0.41 TCGA-LN-A8I0-01 14 100743822 100743822 A G YY1 Missense_Mutation p.H377R 0.28 deleterious(0) probably_damaging(0.978) TCGA-LN-A8I0-01 14 23871799 23871799 C T MYH6 Missense_Mutation p.V339M 0.48 deleterious(0.01) possibly_damaging(0.663) TCGA-LN-A8I0-01 16 29845364 29845364 G A MVP Missense_Mutation p.R185Q 0.24 tolerated(0.1) probably_damaging(0.994) TCGA-LN-A8I0-01 16 69738348 69738348 A T NFAT5 3'UTR 0.31 TCGA-LN-A8I0-01 17 4435944 4435944 C T SPNS2 Silent p.T300T 0.32 TCGA-LN-A8I0-01 17 61899154 61899155 - CTC FTSJ3 In_Frame_Ins p.E508dup 0.30 TCGA-LN-A8I0-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.39 tolerated(0.13) possibly_damaging(0.631) TCGA-LN-A8I0-01 17 7577124 7577124 C T TP53 Missense_Mutation p.V272M 0.27 deleterious(0) probably_damaging(0.997) TCGA-LN-A8I0-01 17 79502107 79502107 G A FSCN2 Missense_Mutation p.E286K 0.35 tolerated(0.2) probably_damaging(0.925) TCGA-LN-A8I0-01 18 28662348 28662348 G T DSC2 Silent p.I373I 0.15 TCGA-LN-A8I0-01 18 6215816 6215816 T A L3MBTL4 Missense_Mutation p.N268I 0.15 deleterious(0.03) benign(0.339) TCGA-LN-A8I0-01 19 22941058 22941058 G T ZNF99 Silent p.T551T 0.24 TCGA-LN-A8I0-01 19 23578124 23578124 C T ZNF91 Intron 0.18 TCGA-LN-A8I0-01 19 43698568 43698568 A T PSG4 Missense_Mutation p.S389R 0.46 tolerated(0.15) benign(0.044) TCGA-LN-A8I0-01 19 45997462 45997462 G A RTN2 Missense_Mutation p.T259M 0.26 deleterious_low_confidence(0.05) benign(0.075) TCGA-LN-A8I0-01 19 46032310 46032310 C A OPA3 3'UTR 0.56 TCGA-LN-A8I0-01 19 49656964 49656964 G A HRC Missense_Mutation p.H511Y 0.44 deleterious(0.05) possibly_damaging(0.844) TCGA-LN-A8I0-01 19 51530744 51530744 C - KLK11 Frame_Shift_Del p.W10* 0.16 TCGA-LN-A8I0-01 1 13448426 13448426 G C PRAMEF13 Missense_Mutation p.S350C 0.55 deleterious(0) possibly_damaging(0.646) TCGA-LN-A8I0-01 1 147380384 147380384 G T GJA8 Missense_Mutation p.R101L 0.53 deleterious(0.01) probably_damaging(0.978) TCGA-LN-A8I0-01 1 151400613 151400613 G A POGZ Missense_Mutation p.T282M 0.39 tolerated(0.25) benign(0.294) TCGA-LN-A8I0-01 1 158725227 158725227 G A OR6K6 Missense_Mutation p.D208N 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-LN-A8I0-01 1 176659289 176659289 C A PAPPA2 Missense_Mutation p.S718R 0.14 deleterious(0) benign(0.077) TCGA-LN-A8I0-01 1 202794595 202794595 C A RP11-480I12.4 5'UTR 0.38 TCGA-LN-A8I0-01 1 28696280 28696311 GTAGGATTTCCGGGAGAGGCTGCTGTGGAGGC T PHACTR4 5'UTR 0.51 TCGA-LN-A8I0-01 1 3389659 3389659 A T ARHGEF16 Missense_Mutation p.E347V 0.68 deleterious(0) possibly_damaging(0.899) TCGA-LN-A8I0-01 1 34025005 34025005 C T CSMD2 Intron 0.35 TCGA-LN-A8I0-01 1 35370962 35370962 C T DLGAP3 Missense_Mutation p.R8Q 0.14 deleterious_low_confidence(0) probably_damaging(0.953) TCGA-LN-A8I0-01 21 46893894 46893894 G T COL18A1 Missense_Mutation p.G426V 0.27 unknown(0) TCGA-LN-A8I0-01 2 128036799 128036799 G T ERCC3 Silent p.V560V 0.35 TCGA-LN-A8I0-01 2 128699019 128699019 A T SAP130 3'UTR 0.70 TCGA-LN-A8I0-01 2 135625109 135625109 C T ACMSD Intron 0.18 TCGA-LN-A8I0-01 2 144704298 144704298 T C GTDC1 3'UTR 0.32 TCGA-LN-A8I0-01 2 162280507 162280507 C T TBR1 Silent p.P606P 0.33 TCGA-LN-A8I0-01 2 178098804 178098804 C T NFE2L2 Missense_Mutation p.G81S 0.28 deleterious(0) probably_damaging(1) TCGA-LN-A8I0-01 2 223791822 223791822 G T ACSL3 Missense_Mutation p.Q460H 0.50 tolerated(0.51) probably_damaging(1) TCGA-LN-A8I0-01 2 224463668 224463668 C T SCG2 Missense_Mutation p.M111I 0.16 tolerated(0.23) benign(0.015) TCGA-LN-A8I0-01 2 224463671 224463671 C T SCG2 Nonsense_Mutation p.W110* 0.16 TCGA-LN-A8I0-01 2 77744758 77744759 - A LRRTM4 Intron 0.31 TCGA-LN-A8I0-01 3 11304403 11304403 T G HRH1 3'UTR 0.53 TCGA-LN-A8I0-01 3 150289908 150289908 T C EIF2A Silent p.H325H 0.23 TCGA-LN-A8I0-01 3 50357934 50357934 G T HYAL2 5'UTR 0.25 TCGA-LN-A8I0-01 4 100540133 100540133 A T MTTP Missense_Mutation p.E740D 0.19 tolerated(0.5) benign(0.001) TCGA-LN-A8I0-01 4 102942701 102942701 G C BANK1 Missense_Mutation p.E413Q 0.30 tolerated(0.09) probably_damaging(0.997) TCGA-LN-A8I0-01 5 1341903 1341903 G A CLPTM1L Silent p.H112H 0.38 TCGA-LN-A8I0-01 5 139192910 139192910 G T PSD2 Nonsense_Mutation p.E130* 0.52 TCGA-LN-A8I0-01 5 7828067 7828067 C T ADCY2 3'UTR 0.50 TCGA-LN-A8I0-01 6 150263195 150263195 G C ULBP2 5'UTR 0.17 TCGA-LN-A8I0-01 6 32183074 32183074 G C NOTCH4 Silent p.L650L 0.32 TCGA-LN-A8I0-01 6 41888792 41888792 A G MED20 5'UTR 0.54 TCGA-LN-A8I0-01 6 43752659 43752659 A T VEGFA 3'Flank 0.50 TCGA-LN-A8I0-01 7 129046260 129046260 C T AHCYL2 Silent p.S416S 0.47 TCGA-LN-A8I0-01 7 33044838 33044838 C G FKBP9 Missense_Mutation p.P530A 0.06 deleterious(0) probably_damaging(0.997) TCGA-LN-A8I0-01 7 5568131 5568131 C T ACTB Missense_Mutation p.E195K 0.28 deleterious_low_confidence(0.02) benign(0.131) TCGA-LN-A8I0-01 7 55750467 55750467 G C RNU6-389P 5'Flank 0.23 TCGA-LN-A8I0-01 7 72413094 72413094 C T POM121 Silent p.T589T 0.24 TCGA-LN-A8I0-01 7 84647607 84647607 G T SEMA3D Missense_Mutation p.H502Q 0.19 tolerated(0.59) benign(0.004) TCGA-LN-A8I0-01 7 94296541 94296541 A C PEG10 3'UTR 0.09 TCGA-LN-A8I0-01 8 39466616 39466616 C A ADAM18 Missense_Mutation p.H82N 0.41 tolerated(0.08) benign(0.068) TCGA-LN-A8I0-01 8 77778027 77778027 C A ZFHX4 3'UTR 0.24 TCGA-LN-A8I0-01 9 111624726 111624726 G A ACTL7A Missense_Mutation p.V42M 0.22 tolerated_low_confidence(0.14) benign(0.07) TCGA-LN-A8I0-01 9 125143816 125143816 G A PTGS1 Silent p.K221K 0.11 TCGA-LN-A8I0-01 9 23690232 23690232 A G ELAVL2 3'UTR 0.74 TCGA-LN-A8I0-01 9 35707164 35707164 G A TLN1 Silent p.L1620L 0.12 TCGA-LN-A8I0-01 9 77742518 77742518 A G OSTF1 Missense_Mutation p.I39V 0.07 tolerated(0.08) benign(0.006) TCGA-LN-A8I0-01 9 95009691 95009691 C T IARS Missense_Mutation p.S920N 0.20 deleterious(0.04) benign(0.003) TCGA-LN-A8I0-01 X 73070803 73070803 C T XIST RNA 0.75 TCGA-LN-A8I0-01 X 99888429 99888429 C A TSPAN6 Missense_Mutation p.Q186H 0.43 tolerated(0.12) benign(0.315) TCGA-LN-A8I1-01 10 103716479 103716479 A G C10orf76 Missense_Mutation p.I527T 0.28 deleterious(0.01) benign(0.201) TCGA-LN-A8I1-01 10 103901420 103901420 C T PPRC1 Missense_Mutation p.P1052L 0.17 tolerated_low_confidence(0.07) benign(0.024) TCGA-LN-A8I1-01 10 21784563 21784563 C T CASC10 Missense_Mutation p.G126E 0.17 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-LN-A8I1-01 10 38343702 38343702 A G ZNF33A Missense_Mutation p.H217R 0.40 tolerated(0.17) benign(0.002) TCGA-LN-A8I1-01 10 43015629 43015629 G A ZNF37BP RNA 0.16 TCGA-LN-A8I1-01 10 73520601 73520601 A G C10orf54 Intron 0.06 TCGA-LN-A8I1-01 10 73862091 73862091 C A ASCC1 Splice_Site 0.27 TCGA-LN-A8I1-01 11 111167343 111167343 T C COLCA1 5'UTR 0.81 TCGA-LN-A8I1-01 11 112123114 112123114 G A PLET1 Silent p.I135I 0.67 TCGA-LN-A8I1-01 11 117244544 117244544 C A CEP164 Silent p.G410G 0.44 TCGA-LN-A8I1-01 11 119549353 119549353 G A PVRL1 Nonsense_Mutation p.Q68* 0.75 TCGA-LN-A8I1-01 11 55872693 55872693 C G OR8H2 Missense_Mutation p.P59A 0.38 deleterious(0.01) benign(0.216) TCGA-LN-A8I1-01 11 59939661 59939661 G A MS4A6A 3'Flank 0.41 TCGA-LN-A8I1-01 11 70281137 70281137 G A CTTN Missense_Mutation p.D471N 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A8I1-01 12 110019329 110019329 G T MVK Silent p.P167P 0.41 TCGA-LN-A8I1-01 12 129028603 129028603 C T TMEM132C Missense_Mutation p.T359M 0.36 deleterious(0.02) probably_damaging(0.909) TCGA-LN-A8I1-01 12 133347734 133347734 A G GOLGA3 3'UTR 0.40 TCGA-LN-A8I1-01 12 15654736 15654736 G A PTPRO Missense_Mutation p.G282S 0.38 tolerated_low_confidence(0.46) benign(0.001) TCGA-LN-A8I1-01 12 44605125 44605125 C T TMEM117 Missense_Mutation p.A188V 0.36 tolerated(0.66) benign(0.023) TCGA-LN-A8I1-01 12 49428677 49428678 - A KMT2D Frame_Shift_Ins p.A3425Cfs*43 0.21 TCGA-LN-A8I1-01 12 58176601 58176601 C T TSFM Missense_Mutation p.S6L 0.49 deleterious_low_confidence(0.01) benign(0.176) TCGA-LN-A8I1-01 12 66358604 66358604 C A HMGA2 3'UTR 0.32 TCGA-LN-A8I1-01 12 6772257 6772257 C T ING4 Missense_Mutation p.G4E 0.29 deleterious(0) possibly_damaging(0.638) TCGA-LN-A8I1-01 12 69145879 69145879 T C SLC35E3 Missense_Mutation p.M194T 0.42 deleterious(0) benign(0.071) TCGA-LN-A8I1-01 12 81537017 81537017 G A ACSS3 Silent p.G304G 0.48 TCGA-LN-A8I1-01 12 88522769 88522769 T C CEP290 Missense_Mutation p.D299G 0.38 probably_damaging(0.999) TCGA-LN-A8I1-01 13 22275604 22275604 A G FGF9 3'UTR 0.43 TCGA-LN-A8I1-01 13 58299731 58299731 C A PCDH17 3'UTR 0.28 TCGA-LN-A8I1-01 13 58301076 58301076 C G PCDH17 3'UTR 0.62 TCGA-LN-A8I1-01 13 70275015 70275015 A G KLHL1 3'UTR 0.67 TCGA-LN-A8I1-01 14 105608099 105608099 T C JAG2 3'UTR 0.54 TCGA-LN-A8I1-01 14 23417087 23417087 G A HAUS4 Missense_Mutation p.A233V 0.39 tolerated(1) benign(0.024) TCGA-LN-A8I1-01 14 36985926 36985926 G A NKX2-1 3'UTR 0.37 TCGA-LN-A8I1-01 14 45667962 45667962 G C FANCM Missense_Mutation p.L1944F 0.25 deleterious(0) probably_damaging(1) TCGA-LN-A8I1-01 14 50597263 50597263 G A SOS2 Missense_Mutation p.S1098L 0.52 deleterious(0.01) benign(0.313) TCGA-LN-A8I1-01 14 62200949 62200949 A T HIF1A Missense_Mutation p.Y349F 0.49 deleterious(0) probably_damaging(0.984) TCGA-LN-A8I1-01 14 70477638 70477638 C T SMOC1 Missense_Mutation p.R278C 0.44 deleterious(0) probably_damaging(0.927) TCGA-LN-A8I1-01 14 96998989 96998989 A T PAPOLA Intron 0.42 TCGA-LN-A8I1-01 14 99969323 99969323 T A CCNK Splice_Site p.X337_splice 0.21 TCGA-LN-A8I1-01 15 20488873 20488873 C T CHEK2P2 RNA 0.16 TCGA-LN-A8I1-01 15 24927502 24927502 T A NPAP1 3'UTR 0.81 TCGA-LN-A8I1-01 15 66783011 66783011 T G MAP2K1 3'UTR 0.07 TCGA-LN-A8I1-01 15 66811367 66811370 AACA - ZWILCH Frame_Shift_Del p.N159Tfs*21 0.10 TCGA-LN-A8I1-01 16 1245968 1245968 G A CACNA1H Silent p.S196S 0.43 TCGA-LN-A8I1-01 16 22007662 22007662 G A PDZD9 Intron 0.16 TCGA-LN-A8I1-01 16 24818001 24818001 A G TNRC6A Missense_Mutation p.H1479R 0.46 tolerated(0.05) probably_damaging(0.994) TCGA-LN-A8I1-01 16 71061539 71061539 T C HYDIN Missense_Mutation p.D1003G 0.18 probably_damaging(0.981) TCGA-LN-A8I1-01 16 723059 723059 G A RHOT2 Silent p.P553P 0.18 TCGA-LN-A8I1-01 16 81047747 81047747 C T CENPN Missense_Mutation p.R60C 0.14 tolerated(0.23) benign(0.009) TCGA-LN-A8I1-01 16 87441433 87441433 G C ZCCHC14 3'UTR 0.34 TCGA-LN-A8I1-01 17 3969750 3969750 C G ZZEF1 Missense_Mutation p.E1414Q 0.35 tolerated(0.07) benign(0.411) TCGA-LN-A8I1-01 17 42286802 42286802 G T UBTF Missense_Mutation p.S608Y 0.57 deleterious(0.01) probably_damaging(0.98) TCGA-LN-A8I1-01 17 42335486 42335486 G A SLC4A1 Missense_Mutation p.R384C 0.40 deleterious(0) probably_damaging(0.973) TCGA-LN-A8I1-01 17 43186129 43186129 C T NMT1 3'UTR 0.27 TCGA-LN-A8I1-01 17 45773323 45773323 C T TBKBP1 5'UTR 0.34 TCGA-LN-A8I1-01 17 6547322 6547322 C T MED31 3'UTR 0.57 TCGA-LN-A8I1-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.80 deleterious(0) probably_damaging(1) TCGA-LN-A8I1-01 17 76968463 76968480 TCGCTGGGCACCGCCAGG - LGALS3BP In_Frame_Del p.D312_S317del 0.11 TCGA-LN-A8I1-01 18 25572711 25572711 C A CDH2 Missense_Mutation p.A418S 0.55 deleterious(0) possibly_damaging(0.855) TCGA-LN-A8I1-01 18 32889613 32889613 A G ZNF271 RNA 0.60 TCGA-LN-A8I1-01 18 55983218 55983218 G C NEDD4L Missense_Mutation p.R101P 0.34 deleterious(0) probably_damaging(1) TCGA-LN-A8I1-01 18 7955118 7955118 G C PTPRM Splice_Site p.X280_splice 0.50 TCGA-LN-A8I1-01 19 11547294 11547294 A G PRKCSH Missense_Mutation p.Y55C 0.30 deleterious(0) probably_damaging(1) TCGA-LN-A8I1-01 19 15571872 15571872 C T RASAL3 Missense_Mutation p.R202Q 0.42 tolerated(0.1) possibly_damaging(0.89) TCGA-LN-A8I1-01 19 36387648 36387648 T C NFKBID Missense_Mutation p.I80V 0.33 tolerated(0.44) benign(0.014) TCGA-LN-A8I1-01 19 37117694 37117694 C G ZNF382 Missense_Mutation p.P299A 0.33 tolerated(0.25) benign(0.001) TCGA-LN-A8I1-01 19 37619827 37619827 G A ZNF420 Missense_Mutation p.C645Y 0.27 deleterious(0.01) possibly_damaging(0.86) TCGA-LN-A8I1-01 19 37903687 37903687 T C ZNF569 Missense_Mutation p.I625V 0.32 deleterious(0.02) probably_damaging(0.978) TCGA-LN-A8I1-01 19 46001827 46001847 GAGGCGGGGCGCAGGGCCCCC - PPM1N In_Frame_Del p.A34_E40del 0.19 TCGA-LN-A8I1-01 19 4954401 4954401 C T UHRF1 RNA 0.38 TCGA-LN-A8I1-01 19 55295326 55295326 G A KIR2DL1 3'UTR 0.10 TCGA-LN-A8I1-01 1 110656110 110656110 C A UBL4B 3'UTR 0.29 TCGA-LN-A8I1-01 1 11894293 11894293 C T CLCN6 Silent p.S509S 0.41 TCGA-LN-A8I1-01 1 152976112 152976112 T C SPRR3 3'UTR 0.23 TCGA-LN-A8I1-01 1 157559012 157559012 G A FCRL4 Missense_Mutation p.R97C 0.04 tolerated(0.1) benign(0.417) TCGA-LN-A8I1-01 1 168283550 168283550 A G TBX19 3'UTR 0.85 TCGA-LN-A8I1-01 1 196716457 196716457 G A CFH 3'UTR 0.12 TCGA-LN-A8I1-01 1 197125382 197125382 C G ZBTB41 3'UTR 0.32 TCGA-LN-A8I1-01 1 201763801 201763801 A G NAV1 Intron 0.41 TCGA-LN-A8I1-01 1 245850736 245850736 C T KIF26B Missense_Mutation p.P1484L 0.71 tolerated(0.16) unknown(0) TCGA-LN-A8I1-01 20 34089770 34089770 G A CEP250 Missense_Mutation p.E1333K 0.40 possibly_damaging(0.874) TCGA-LN-A8I1-01 20 49509654 49509654 T A ADNP Missense_Mutation p.M533L 0.33 tolerated(0.95) benign(0.001) TCGA-LN-A8I1-01 21 31797973 31797973 G A KRTAP13-3 Silent p.H86H 0.33 TCGA-LN-A8I1-01 21 44329103 44329103 C A NDUFV3 Missense_Mutation p.S465Y 0.43 deleterious(0) probably_damaging(1) TCGA-LN-A8I1-01 21 45232041 45232041 C T AP001053.11 RNA 0.28 TCGA-LN-A8I1-01 22 31795658 31795658 G T DRG1 5'UTR 0.17 TCGA-LN-A8I1-01 22 42274003 42274004 GT - SREBF2 Frame_Shift_Del p.V547Dfs*105 0.23 TCGA-LN-A8I1-01 2 178098800 178098800 T G NFE2L2 Missense_Mutation p.E82A 0.70 deleterious(0) probably_damaging(0.999) TCGA-LN-A8I1-01 2 25141367 25141367 C T ADCY3 Missense_Mutation p.A164T 0.09 tolerated(0.72) benign(0.001) TCGA-LN-A8I1-01 2 74442339 74442339 A G MTHFD2 3'UTR 0.57 TCGA-LN-A8I1-01 2 80875725 80875725 T C CTNNA2 3'UTR 0.14 TCGA-LN-A8I1-01 2 86831974 86831975 - A RNF103 Frame_Shift_Ins p.R352Afs*13 0.14 TCGA-LN-A8I1-01 2 88367423 88367423 G A SMYD1 Missense_Mutation p.A14T 0.15 tolerated(0.2) benign(0.012) TCGA-LN-A8I1-01 3 142388241 142388241 A G PLS1 Missense_Mutation p.N27S 0.16 tolerated(0.29) benign(0.021) TCGA-LN-A8I1-01 3 16250103 16250103 G A GALNT15 Nonsense_Mutation p.W335* 0.27 TCGA-LN-A8I1-01 3 165503943 165503943 C T BCHE Silent p.L558L 0.24 TCGA-LN-A8I1-01 3 47889673 47889696 TCCTGCCTGGAGACAGTGTGGGTA - DHX30 In_Frame_Del p.C765_S772del 0.29 TCGA-LN-A8I1-01 3 88199286 88199286 C T C3orf38 Silent p.A28A 0.70 TCGA-LN-A8I1-01 3 98311880 98311880 G C CPOX Missense_Mutation p.L157V 0.14 tolerated(0.26) benign(0.261) TCGA-LN-A8I1-01 4 142651093 142651093 G C IL15 Missense_Mutation p.E112Q 0.15 tolerated(0.25) benign(0.017) TCGA-LN-A8I1-01 4 151771892 151771892 T C LRBA Missense_Mutation p.I1330V 0.22 tolerated(0.75) probably_damaging(0.946) TCGA-LN-A8I1-01 4 162307332 162307332 T A FSTL5 Missense_Mutation p.H704L 0.49 deleterious(0.02) possibly_damaging(0.777) TCGA-LN-A8I1-01 4 46252353 46252353 C T GABRA2 Missense_Mutation p.R443K 0.16 tolerated(0.45) benign(0.071) TCGA-LN-A8I1-01 4 52943092 52943092 C T SPATA18 Silent p.L302L 0.24 TCGA-LN-A8I1-01 5 140262071 140262071 A G PCDHA13 Missense_Mutation p.D73G 0.26 deleterious_low_confidence(0.01) benign(0.113) TCGA-LN-A8I1-01 5 140263363 140263363 C G PCDHA13 Missense_Mutation p.L504V 0.22 deleterious_low_confidence(0.03) benign(0.1) TCGA-LN-A8I1-01 5 140263450 140263450 T G PCDHA13 Missense_Mutation p.F533V 0.21 deleterious_low_confidence(0.04) benign(0.168) TCGA-LN-A8I1-01 5 1422077 1422077 G A SLC6A3 Missense_Mutation p.P236S 0.24 deleterious(0.04) probably_damaging(0.984) TCGA-LN-A8I1-01 5 1602846 1602846 C T CTD-2012J19.3 Intron 0.33 TCGA-LN-A8I1-01 5 178555035 178555035 C T ADAMTS2 Missense_Mutation p.V848I 0.52 deleterious(0.05) benign(0.01) TCGA-LN-A8I1-01 5 36253802 36253802 G A RANBP3L Nonsense_Mutation p.R397* 0.44 TCGA-LN-A8I1-01 6 117715336 117715336 T G ROS1 Missense_Mutation p.M385L 0.35 tolerated(0.24) benign(0.039) TCGA-LN-A8I1-01 6 123377007 123377007 C T CLVS2 Silent p.I244I 0.25 TCGA-LN-A8I1-01 6 143382095 143382095 G T AIG1 Missense_Mutation p.M11I 0.44 tolerated(0.18) benign(0) TCGA-LN-A8I1-01 6 26468869 26468869 C T BTN2A1 3'UTR 0.39 TCGA-LN-A8I1-01 6 31795600 31795600 C A HSPA1B 5'UTR 0.46 TCGA-LN-A8I1-01 6 43538251 43538251 C A XPO5 Missense_Mutation p.K203N 0.23 tolerated(0.31) benign(0.03) TCGA-LN-A8I1-01 6 52363725 52363725 A G TRAM2 3'UTR 0.31 TCGA-LN-A8I1-01 7 1024635 1024635 G C CYP2W1 Silent p.T129T 0.46 TCGA-LN-A8I1-01 7 106836591 106836591 T A HBP1 Missense_Mutation p.D460E 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A8I1-01 7 106836593 106836593 A G HBP1 Missense_Mutation p.N461S 0.25 deleterious(0) probably_damaging(0.999) TCGA-LN-A8I1-01 7 108119807 108119807 A C PNPLA8 Missense_Mutation p.L632R 0.58 deleterious(0) possibly_damaging(0.752) TCGA-LN-A8I1-01 7 135079021 135079021 G C CNOT4 Missense_Mutation p.Q426E 0.25 tolerated(0.19) benign(0.013) TCGA-LN-A8I1-01 7 16685776 16685776 C G BZW2 5'UTR 0.26 TCGA-LN-A8I1-01 7 4798961 4798961 G A FOXK1 Silent p.Q477Q 0.35 TCGA-LN-A8I1-01 7 99754275 99754275 C T C7orf43 Missense_Mutation p.S353N 0.27 tolerated(0.3) possibly_damaging(0.682) TCGA-LN-A8I1-01 8 143694754 143694754 C A ARC Missense_Mutation p.K293N 0.30 deleterious(0.03) probably_damaging(0.996) TCGA-LN-A8I1-01 8 18080634 18080634 A G NAT1 3'UTR 0.61 TCGA-LN-A8I1-01 8 41788202 41788202 G A KAT6A 3'UTR 0.12 TCGA-LN-A8I1-01 8 89052287 89052287 A G MMP16 3'UTR 0.45 TCGA-LN-A8I1-01 9 107555517 107555517 G A ABCA1 Silent p.A1857A 0.81 TCGA-LN-A8I1-01 9 121930291 121930291 C A BRINP1 Missense_Mutation p.G453C 0.56 deleterious(0) probably_damaging(0.996) TCGA-LN-A8I1-01 9 127019915 127019915 G A NEK6 5'Flank 0.67 TCGA-LN-A8I1-01 9 131186799 131186800 - G CERCAM Frame_Shift_Ins p.A226Gfs*39 0.17 TCGA-LN-A8I1-01 9 132687355 132687355 T C FNBP1 Missense_Mutation p.M291V 0.61 tolerated(0.08) benign(0.002) TCGA-LN-A8I1-01 9 32631847 32631847 C T TAF1L Missense_Mutation p.R1244Q 0.67 deleterious(0.01) probably_damaging(0.987) TCGA-LN-A8I1-01 9 712709 712709 G A KANK1 Missense_Mutation p.R648Q 0.70 tolerated(0.42) benign(0.009) TCGA-LN-A8I1-01 X 139585308 139585308 T C SOX3 3'UTR 0.58 TCGA-LN-A8I1-01 X 140994968 140994968 A T MAGEC1 Missense_Mutation p.H593L 0.23 tolerated_low_confidence(1) benign(0.227) TCGA-LN-A8I1-01 X 140994985 140994987 CCT - MAGEC1 In_Frame_Del p.P600del 0.17 TCGA-LN-A8I1-01 X 140995006 140995006 A C MAGEC1 Missense_Mutation p.M606L 0.56 tolerated_low_confidence(1) benign(0) TCGA-LN-A8I1-01 X 49106138 49106138 C T CCDC22 Silent p.I574I 0.07 TCGA-LN-A8I1-01 X 89177504 89177504 G A TGIF2LX Silent p.A140A 0.52 TCGA-LN-A8I1-01 X 90692396 90692396 T A PABPC5 3'UTR 0.13 TCGA-LN-A9FO-01 10 102778670 102778670 C T PDZD7 Silent p.A411A 0.21 TCGA-LN-A9FO-01 10 115981169 115981169 A G TDRD1 Missense_Mutation p.I942V 0.30 tolerated(1) benign(0.001) TCGA-LN-A9FO-01 10 120353994 120353994 G A PRLHR Missense_Mutation p.R255C 0.16 tolerated(0.14) possibly_damaging(0.479) TCGA-LN-A9FO-01 10 131635210 131635212 TTT - EBF3 3'UTR 0.51 TCGA-LN-A9FO-01 10 134751079 134751079 A G TTC40 Missense_Mutation p.Y213H 0.17 deleterious(0) probably_damaging(0.995) TCGA-LN-A9FO-01 10 78084168 78084168 G C C10orf11 Missense_Mutation p.E148Q 0.05 tolerated(0.4) benign(0.006) TCGA-LN-A9FO-01 10 97920573 97920573 G A ZNF518A RNA 0.32 TCGA-LN-A9FO-01 11 17741729 17741729 C T MYOD1 Missense_Mutation p.R134C 0.10 deleterious(0) probably_damaging(1) TCGA-LN-A9FO-01 11 2981115 2981115 C T NAP1L4 Missense_Mutation p.E211K 0.64 tolerated(0.33) benign(0.124) TCGA-LN-A9FO-01 11 63953634 63953634 G A STIP1 5'UTR 0.19 TCGA-LN-A9FO-01 11 65273214 65273214 G C MALAT1 RNA 0.12 TCGA-LN-A9FO-01 11 67023792 67023792 C G KDM2A 3'UTR 0.31 TCGA-LN-A9FO-01 11 72287931 72287931 C T PDE2A 3'UTR 0.60 TCGA-LN-A9FO-01 11 78381002 78381002 T C TENM4 Missense_Mutation p.I2130V 0.48 deleterious(0.02) possibly_damaging(0.833) TCGA-LN-A9FO-01 11 89882266 89882266 C A NAALAD2 Silent p.G158G 0.58 TCGA-LN-A9FO-01 11 92532036 92532036 C A FAT3 Missense_Mutation p.L1953M 0.62 possibly_damaging(0.866) TCGA-LN-A9FO-01 12 101505402 101505402 C G ANO4 Silent p.V753V 0.15 TCGA-LN-A9FO-01 12 109547654 109547654 G A UNG Silent p.Q274Q 0.32 TCGA-LN-A9FO-01 12 117890935 117890935 C T RP11-227B21.2 RNA 0.14 TCGA-LN-A9FO-01 12 49298842 49298842 G C CCDC65 Missense_Mutation p.E82D 0.33 tolerated(0.09) possibly_damaging(0.749) TCGA-LN-A9FO-01 12 53086350 53086350 G T KRT77 Missense_Mutation p.L428M 0.41 deleterious(0.01) possibly_damaging(0.873) TCGA-LN-A9FO-01 12 63195713 63195713 G A PPM1H Silent p.R213R 0.22 TCGA-LN-A9FO-01 12 63541286 63541286 C A AVPR1A Missense_Mutation p.K370N 0.26 tolerated(0.27) benign(0.002) TCGA-LN-A9FO-01 12 66539653 66539653 T C TMBIM4 Silent p.Q144Q 0.24 TCGA-LN-A9FO-01 12 81624851 81624851 T C ACSS3 Silent p.P510P 0.33 TCGA-LN-A9FO-01 12 8206054 8206054 A G FOXJ2 3'UTR 0.39 TCGA-LN-A9FO-01 12 99128582 99128582 A G APAF1 3'Flank 0.58 TCGA-LN-A9FO-01 13 114294708 114294708 G C TFDP1 3'UTR 0.56 TCGA-LN-A9FO-01 13 77641876 77641876 C G MYCBP2 Missense_Mutation p.D4061H 0.69 probably_damaging(0.997) TCGA-LN-A9FO-01 13 88327729 88327729 C T SLITRK5 Missense_Mutation p.A29V 0.09 tolerated(0.15) benign(0.004) TCGA-LN-A9FO-01 14 102963419 102963419 A G TECPR2 Missense_Mutation p.E1298G 0.48 deleterious(0) benign(0.1) TCGA-LN-A9FO-01 14 19969402 19969402 T - CTD-2311B13.7 RNA 0.26 TCGA-LN-A9FO-01 14 39501264 39501264 T C SEC23A 3'UTR 0.37 TCGA-LN-A9FO-01 14 53197004 53197004 G A STYX 5'UTR 0.41 TCGA-LN-A9FO-01 14 59930820 59930820 C T GPR135 Silent p.L375L 0.05 TCGA-LN-A9FO-01 14 61180669 61180669 C A SIX4 Missense_Mutation p.G601V 0.36 deleterious_low_confidence(0) benign(0.322) TCGA-LN-A9FO-01 14 68236404 68236404 C T ZFYVE26 Missense_Mutation p.C1843Y 0.48 deleterious(0) probably_damaging(1) TCGA-LN-A9FO-01 14 88859798 88859798 G A SPATA7 Missense_Mutation p.M52I 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-LN-A9FO-01 15 44881455 44881455 G C SPG11 Missense_Mutation p.S1634C 0.31 tolerated(0.12) probably_damaging(0.987) TCGA-LN-A9FO-01 15 52425597 52425597 C T GNB5 Missense_Mutation p.E281K 0.51 deleterious(0.02) possibly_damaging(0.481) TCGA-LN-A9FO-01 15 52842237 52842237 T C ARPP19 3'UTR 0.33 TCGA-LN-A9FO-01 15 56386365 56386365 A G RFX7 Silent p.N1187N 0.61 TCGA-LN-A9FO-01 15 57580564 57580564 G C TCF12 3'UTR 0.37 TCGA-LN-A9FO-01 15 58430744 58430744 A C AQP9 5'UTR 0.17 TCGA-LN-A9FO-01 15 59373162 59373162 A G RNF111 Missense_Mutation p.H659R 0.39 deleterious(0) probably_damaging(0.995) TCGA-LN-A9FO-01 15 75809693 75809693 C T PTPN9 Silent p.Q145Q 0.45 TCGA-LN-A9FO-01 16 17197032 17197032 G A XYLT1 3'UTR 0.20 TCGA-LN-A9FO-01 16 30773082 30773082 C G C16orf93 5'UTR 0.42 TCGA-LN-A9FO-01 16 5125388 5125388 G A ALG1 Splice_Site p.X131_splice 0.38 TCGA-LN-A9FO-01 17 1945944 1945944 A T OVCA2 Missense_Mutation p.E77V 0.33 tolerated(0.06) possibly_damaging(0.588) TCGA-LN-A9FO-01 17 26652649 26652649 A G TMEM97 Missense_Mutation p.I83V 0.11 tolerated(1) benign(0.004) TCGA-LN-A9FO-01 17 37318973 37318973 G A ARL5C Silent p.S82S 0.40 TCGA-LN-A9FO-01 17 41582146 41582146 C T DHX8 Nonsense_Mutation p.Q561* 0.43 TCGA-LN-A9FO-01 17 46005104 46005104 G A SP2 Missense_Mutation p.E586K 0.21 deleterious(0.01) benign(0.166) TCGA-LN-A9FO-01 17 5418260 5418260 C G NLRP1 Missense_Mutation p.Q1412H 0.37 deleterious(0) probably_damaging(0.992) TCGA-LN-A9FO-01 17 62855652 62855652 T C LRRC37A3 Missense_Mutation p.K1538E 0.07 deleterious(0) probably_damaging(0.926) TCGA-LN-A9FO-01 17 7578239 7578239 C A TP53 Nonsense_Mutation p.E204* 0.66 TCGA-LN-A9FO-01 17 79477613 79477613 T C ACTG1 3'UTR 0.41 TCGA-LN-A9FO-01 19 11537295 11537295 C G CCDC151 Missense_Mutation p.E271Q 0.19 deleterious(0.05) possibly_damaging(0.644) TCGA-LN-A9FO-01 19 23328256 23328256 T C ZNF730 Missense_Mutation p.L137S 0.29 tolerated(0.08) benign(0.001) TCGA-LN-A9FO-01 19 37416130 37416130 C T ZNF568 Silent p.S35S 0.37 TCGA-LN-A9FO-01 19 44116308 44116308 T C SRRM5 Missense_Mutation p.M12T 0.36 tolerated(0.18) benign(0) TCGA-LN-A9FO-01 19 44571272 44571272 G C ZNF223 Missense_Mutation p.E431Q 0.37 deleterious(0.03) probably_damaging(0.976) TCGA-LN-A9FO-01 19 46506729 46506729 C T CCDC61 Silent p.F67F 0.05 TCGA-LN-A9FO-01 19 47587710 47587710 G A ZC3H4 Silent p.D370D 0.44 TCGA-LN-A9FO-01 19 51021262 51021262 C T LRRC4B Missense_Mutation p.D570N 0.40 deleterious(0) possibly_damaging(0.588) TCGA-LN-A9FO-01 1 145752451 145752451 G C PDZK1 Missense_Mutation p.D162H 0.32 deleterious(0.02) probably_damaging(0.934) TCGA-LN-A9FO-01 1 169292492 169292493 - A NME7 Frame_Shift_Ins p.L47Ffs*7 0.15 TCGA-LN-A9FO-01 1 172580459 172580459 T C SUCO 3'UTR 0.43 TCGA-LN-A9FO-01 1 177913774 177913774 A C SEC16B Silent p.T601T 0.17 TCGA-LN-A9FO-01 1 207639910 207639910 G A CR2 Missense_Mutation p.R33Q 0.17 tolerated(0.13) benign(0.049) TCGA-LN-A9FO-01 1 208061047 208061047 C G CD34 3'UTR 0.10 TCGA-LN-A9FO-01 1 211956837 211956837 G C LPGAT1 Missense_Mutation p.S154C 0.23 deleterious(0.02) possibly_damaging(0.841) TCGA-LN-A9FO-01 1 222791507 222791507 C A MIA3 Silent p.R19R 0.67 TCGA-LN-A9FO-01 1 228646241 228646248 CTCTTTTC G HIST3H2BB 3'UTR 0.16 TCGA-LN-A9FO-01 1 229567918 229567918 C T ACTA1 Missense_Mutation p.V211M 0.09 deleterious_low_confidence(0.02) probably_damaging(0.965) TCGA-LN-A9FO-01 1 246811175 246811175 G C CNST Missense_Mutation p.D558H 0.20 deleterious(0) probably_damaging(0.973) TCGA-LN-A9FO-01 1 32222184 32222184 C T BAI2 Missense_Mutation p.R85H 0.20 deleterious(0.05) benign(0.017) TCGA-LN-A9FO-01 1 84961936 84961936 C T RPF1 Silent p.F297F 0.66 TCGA-LN-A9FO-01 1 91727919 91727919 G A HFM1 Silent p.L1373L 0.32 TCGA-LN-A9FO-01 20 1515066 1515066 T A SIRPD 3'UTR 0.04 TCGA-LN-A9FO-01 20 32376685 32376685 A G ZNF341 Silent p.K616K 0.33 TCGA-LN-A9FO-01 20 42195101 42195101 C T SGK2 Missense_Mutation p.P49L 0.12 tolerated_low_confidence(0.25) benign(0) TCGA-LN-A9FO-01 20 57766387 57766387 G A ZNF831 Missense_Mutation p.V105M 0.43 tolerated(0.27) benign(0.07) TCGA-LN-A9FO-01 21 47954536 47954536 A G DIP2A Silent p.T526T 0.08 TCGA-LN-A9FO-01 22 31836038 31836038 G A EIF4ENIF1 Missense_Mutation p.P929L 0.42 tolerated(0.44) benign(0.057) TCGA-LN-A9FO-01 22 39138309 39138310 - A SUN2 Frame_Shift_Ins p.Q377Pfs*186 0.48 TCGA-LN-A9FO-01 22 40140021 40140021 T C ENTHD1 Missense_Mutation p.N496S 0.19 deleterious(0.02) benign(0.007) TCGA-LN-A9FO-01 2 10073979 10073979 C G TAF1B Missense_Mutation p.L545V 0.15 deleterious(0) benign(0.334) TCGA-LN-A9FO-01 2 114715987 114715987 G C ACTR3 3'UTR 0.42 TCGA-LN-A9FO-01 2 136873012 136873012 G C CXCR4 Missense_Mutation p.I166M 0.41 deleterious(0.03) benign(0.228) TCGA-LN-A9FO-01 2 179648828 179648828 C T TTN Missense_Mutation p.R915H 0.20 TCGA-LN-A9FO-01 2 180306890 180306890 G A ZNF385B 3'UTR 0.42 TCGA-LN-A9FO-01 2 186655921 186655921 T C FSIP2 Missense_Mutation p.L1442S 0.43 benign(0.098) TCGA-LN-A9FO-01 2 198649982 198649982 G A BOLL Intron 0.22 TCGA-LN-A9FO-01 2 203149089 203149089 A T NOP58 Missense_Mutation p.I107F 0.25 deleterious(0) possibly_damaging(0.536) TCGA-LN-A9FO-01 2 204053201 204053201 G C NBEAL1 Missense_Mutation p.E2209Q 0.22 deleterious(0) probably_damaging(1) TCGA-LN-A9FO-01 2 220404553 220404553 C T CHPF Missense_Mutation p.R627H 0.17 deleterious(0) probably_damaging(0.998) TCGA-LN-A9FO-01 2 220480764 220480764 A G STK11IP Splice_Site p.X1051_splice 0.53 TCGA-LN-A9FO-01 2 226447460 226447460 G C NYAP2 Missense_Mutation p.G443R 0.43 deleterious(0) possibly_damaging(0.881) TCGA-LN-A9FO-01 2 42557907 42557907 T C EML4 3'UTR 0.17 TCGA-LN-A9FO-01 2 96940721 96940721 C A SNRNP200 3'UTR 0.37 TCGA-LN-A9FO-01 3 126754840 126754840 C A PLXNA1 3'UTR 0.26 TCGA-LN-A9FO-01 3 181431170 181431170 A G SOX2 3'UTR 0.37 TCGA-LN-A9FO-01 3 182583393 182583393 A G ATP11B Silent p.L450L 0.38 TCGA-LN-A9FO-01 4 146056332 146056332 A G OTUD4 3'UTR 0.12 TCGA-LN-A9FO-01 4 153243410 153243410 T C FBXW7 3'UTR 0.83 TCGA-LN-A9FO-01 4 39776500 39776500 C G UBE2K Missense_Mutation p.L116V 0.80 deleterious(0.03) benign(0.353) TCGA-LN-A9FO-01 4 83799895 83799895 C G SEC31A Silent p.V130V 0.57 TCGA-LN-A9FO-01 5 127866299 127866299 C T FBN2 Missense_Mutation p.G142E 0.20 deleterious(0) benign(0) TCGA-LN-A9FO-01 5 13810233 13810233 G A DNAH5 Missense_Mutation p.T2515M 0.28 possibly_damaging(0.791) TCGA-LN-A9FO-01 5 140230375 140230375 G A PCDHA9 Silent p.Q765Q 0.44 TCGA-LN-A9FO-01 5 140481751 140481751 C G PCDHB3 Missense_Mutation p.I506M 0.23 deleterious_low_confidence(0) possibly_damaging(0.458) TCGA-LN-A9FO-01 5 140870755 140870755 G T PCDHGC5 Missense_Mutation p.D650Y 0.18 deleterious(0) probably_damaging(1) TCGA-LN-A9FO-01 5 141033939 141033939 C T ARAP3 Missense_Mutation p.E1405K 0.21 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-LN-A9FO-01 5 156908845 156908845 C A ADAM19 Missense_Mutation p.G886V 0.16 tolerated(0.14) benign(0.001) TCGA-LN-A9FO-01 5 162944449 162944449 G C MAT2B Intron 0.40 TCGA-LN-A9FO-01 5 176047521 176047521 C G SNCB 3'UTR 0.22 TCGA-LN-A9FO-01 5 23527626 23527626 G T PRDM9 Missense_Mutation p.G810V 0.36 deleterious(0) probably_damaging(1) TCGA-LN-A9FO-01 6 143081380 143081380 T C HIVEP2 Silent p.R2015R 0.53 TCGA-LN-A9FO-01 6 147123946 147123946 T C ADGB Intron 0.43 TCGA-LN-A9FO-01 6 151677145 151677145 G T AKAP12 3'UTR 0.37 TCGA-LN-A9FO-01 6 151766902 151766902 T C RMND1 Missense_Mutation p.I15M 0.15 tolerated_low_confidence(0.09) benign(0.234) TCGA-LN-A9FO-01 6 16147493 16147493 A G MYLIP 3'Flank 0.48 TCGA-LN-A9FO-01 6 169637866 169637866 G C THBS2 Missense_Mutation p.S385C 0.16 deleterious(0) probably_damaging(0.991) TCGA-LN-A9FO-01 6 17706534 17706534 A C NUP153 Missense_Mutation p.Y29D 0.47 deleterious(0) possibly_damaging(0.824) TCGA-LN-A9FO-01 6 26033433 26033433 C T HIST1H2AB Missense_Mutation p.E122K 0.05 tolerated_low_confidence(0.19) benign(0.071) TCGA-LN-A9FO-01 6 26056024 26056024 C T HIST1H1C Silent p.K211K 0.42 TCGA-LN-A9FO-01 6 27879749 27879749 C G OR2B2 Missense_Mutation p.V117L 0.27 deleterious(0.04) benign(0.334) TCGA-LN-A9FO-01 6 28402571 28402571 C T ZSCAN23 Missense_Mutation p.E281K 0.46 deleterious(0.01) possibly_damaging(0.761) TCGA-LN-A9FO-01 6 31922591 31922591 A G NELFE Silent p.G161G 0.12 TCGA-LN-A9FO-01 6 33286968 33286968 C G DAXX Missense_Mutation p.E657Q 0.10 tolerated(0.36) benign(0.135) TCGA-LN-A9FO-01 6 41243905 41243905 G A TREM1 Silent p.F221F 0.05 TCGA-LN-A9FO-01 7 105603730 105603730 T A CDHR3 5'UTR 0.31 TCGA-LN-A9FO-01 7 148114542 148114542 T C CNTNAP2 3'UTR 0.31 TCGA-LN-A9FO-01 7 149486300 149486300 G T SSPO RNA 0.34 TCGA-LN-A9FO-01 7 22233043 22233043 C T RAPGEF5 Silent p.K229K 0.30 TCGA-LN-A9FO-01 7 56145799 56145799 A G SUMF2 Missense_Mutation p.K218R 0.37 tolerated(0.12) benign(0.006) TCGA-LN-A9FO-01 7 76024576 76024576 G A SRCRB4D Missense_Mutation p.P314S 0.24 tolerated(0.29) benign(0.009) TCGA-LN-A9FO-01 7 76254993 76254993 G A POMZP3 Nonsense_Mutation p.Q25* 0.30 TCGA-LN-A9FO-01 8 104439377 104439377 G A DCAF13 Missense_Mutation p.C326Y 0.23 deleterious(0) probably_damaging(0.987) TCGA-LN-A9FO-01 8 113236720 113236720 C A CSMD3 3'UTR 0.15 TCGA-LN-A9FO-01 8 124790938 124790938 A G FAM91A1 Missense_Mutation p.I159V 0.15 tolerated(0.41) benign(0.001) TCGA-LN-A9FO-01 8 132052045 132052045 G A ADCY8 Missense_Mutation p.R179C 0.24 deleterious(0) probably_damaging(0.929) TCGA-LN-A9FO-01 8 144996545 144996545 C G PLEC Missense_Mutation p.E2619Q 0.28 possibly_damaging(0.87) TCGA-LN-A9FO-01 8 144996723 144996723 C G PLEC Missense_Mutation p.E2595D 0.28 probably_damaging(0.989) TCGA-LN-A9FO-01 8 146203408 146203408 C A ZNF252P RNA 0.24 TCGA-LN-A9FO-01 8 163319 163319 C G RPL23AP53 RNA 0.18 TCGA-LN-A9FO-01 8 40389215 40389215 C T ZMAT4 3'UTR 0.14 TCGA-LN-A9FO-01 9 104499884 104499884 G A GRIN3A Silent p.D126D 0.22 TCGA-LN-A9FO-01 9 130493299 130493299 C G TTC16 Missense_Mutation p.S746C 0.06 deleterious(0.02) possibly_damaging(0.706) TCGA-LN-A9FO-01 9 133780706 133780706 G A FIBCD1 Silent p.Y347Y 0.43 TCGA-LN-A9FO-01 9 33941666 33941666 G C UBAP2 Nonsense_Mutation p.S637* 0.49 TCGA-LN-A9FO-01 9 35561273 35561273 G C RUSC2 Missense_Mutation p.G1482A 0.61 tolerated(0.91) benign(0.036) TCGA-LN-A9FO-01 X 142718078 142718078 C G SLITRK4 Missense_Mutation p.G283R 0.38 tolerated(0.37) possibly_damaging(0.526) TCGA-LN-A9FO-01 X 151934867 151934867 C T MAGEA3 3'UTR 0.43 TCGA-LN-A9FO-01 X 17165604 17165605 - C REPS2 3'UTR 0.61 TCGA-LN-A9FO-01 X 53223826 53223826 G A KDM5C Missense_Mutation p.S1178L 0.53 tolerated(0.22) benign(0.002) TCGA-LN-A9FO-01 X 79698376 79698376 C A FAM46D Missense_Mutation p.P113Q 0.82 deleterious(0) probably_damaging(1) TCGA-LN-A9FO-01 X 86873036 86873036 A T KLHL4 Nonsense_Mutation p.K277* 0.29 TCGA-LN-A9FP-01 10 102799314 102799314 A C SFXN3 Missense_Mutation p.E317A 0.07 tolerated(0.26) benign(0.003) TCGA-LN-A9FP-01 10 134623983 134623983 G T TTC40 Missense_Mutation p.R2532S 0.06 tolerated_low_confidence(1) benign(0.002) TCGA-LN-A9FP-01 10 134682826 134682826 T A TTC40 Missense_Mutation p.H1521L 0.09 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 10 134694436 134694436 C G TTC40 Missense_Mutation p.R1243P 0.08 tolerated(0.06) benign(0.376) TCGA-LN-A9FP-01 10 15254423 15254423 C T FAM171A1 3'UTR 0.07 TCGA-LN-A9FP-01 10 16992031 16992031 C A CUBN Missense_Mutation p.L1683F 0.06 deleterious(0.02) possibly_damaging(0.521) TCGA-LN-A9FP-01 10 19856477 19856477 T G MALRD1 Missense_Mutation p.V1221G 0.12 tolerated(0.17) benign(0.039) TCGA-LN-A9FP-01 10 21074209 21074209 G A NEBL 3'UTR 0.08 TCGA-LN-A9FP-01 10 21805376 21805376 A G SKIDA1 Missense_Mutation p.V459A 0.16 deleterious_low_confidence(0.02) unknown(0) TCGA-LN-A9FP-01 10 32856778 32856778 G A CCDC7 Missense_Mutation p.G460S 0.28 tolerated(0.06) probably_damaging(0.927) TCGA-LN-A9FP-01 10 34408625 34408625 G A PARD3 Missense_Mutation p.S1198F 0.14 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-LN-A9FP-01 10 35819102 35819102 G T CCNY Missense_Mutation p.Q170H 0.21 tolerated(0.55) benign(0.024) TCGA-LN-A9FP-01 10 38343809 38343809 G C ZNF33A Missense_Mutation p.G253R 0.14 tolerated(0.22) benign(0.191) TCGA-LN-A9FP-01 10 43615577 43615577 C A RET Silent p.R886R 0.13 TCGA-LN-A9FP-01 10 49654430 49654430 C A ARHGAP22 3'UTR 0.10 TCGA-LN-A9FP-01 10 50165273 50165273 C A WDFY4 Missense_Mutation p.P2693T 0.11 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 10 50953480 50953480 C A OGDHL Missense_Mutation p.M513I 0.18 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 10 5260694 5260694 C A AKR1C4 Missense_Mutation p.P315T 0.12 deleterious(0.01) benign(0.014) TCGA-LN-A9FP-01 10 5541125 5541125 C A CALML5 Missense_Mutation p.D93Y 0.21 deleterious(0) probably_damaging(0.988) TCGA-LN-A9FP-01 10 68857758 68857758 C G LRRTM3 3'UTR 0.20 TCGA-LN-A9FP-01 10 71008284 71008284 C A HKDC1 Missense_Mutation p.T457N 0.11 deleterious(0) probably_damaging(0.992) TCGA-LN-A9FP-01 10 72543169 72543169 C G TBATA 5'UTR 0.07 TCGA-LN-A9FP-01 10 73571509 73571509 T A CDH23 Silent p.A866A 0.10 TCGA-LN-A9FP-01 10 73820158 73820158 G T SPOCK2 3'UTR 0.11 TCGA-LN-A9FP-01 10 73912705 73912705 C A ASCC1 Missense_Mutation p.G251V 0.16 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 10 88466294 88466294 T A LDB3 Intron 0.05 TCGA-LN-A9FP-01 10 89514503 89514503 T C ATAD1 Missense_Mutation p.M343V 0.06 tolerated(0.07) benign(0.009) TCGA-LN-A9FP-01 11 117395568 117395568 T A DSCAML1 Missense_Mutation p.T357S 0.13 tolerated(0.9) benign(0.006) TCGA-LN-A9FP-01 11 118499143 118499143 G A PHLDB1 Missense_Mutation p.S535N 0.07 tolerated(0.09) benign(0.187) TCGA-LN-A9FP-01 11 123887127 123887127 C G OR10G4 Silent p.L282L 0.05 TCGA-LN-A9FP-01 11 124845083 124845083 G A CCDC15 Missense_Mutation p.R203K 0.07 tolerated(0.38) benign(0.138) TCGA-LN-A9FP-01 11 1263506 1263506 C A MUC5B Missense_Mutation p.P1799Q 0.10 unknown(0) TCGA-LN-A9FP-01 11 1272626 1272626 C A MUC5B Missense_Mutation p.S4839Y 0.09 unknown(0) TCGA-LN-A9FP-01 11 132289974 132289974 T A OPCML 3'UTR 0.10 TCGA-LN-A9FP-01 11 14632583 14632583 G T PSMA1 5'UTR 0.07 TCGA-LN-A9FP-01 11 1955826 1955826 G A TNNT3 Silent p.K177K 0.08 TCGA-LN-A9FP-01 11 2426099 2426099 G T TRPM5 3'UTR 0.10 TCGA-LN-A9FP-01 11 26587248 26587248 G C MUC15 Missense_Mutation p.A80G 0.05 tolerated_low_confidence(0.16) benign(0.032) TCGA-LN-A9FP-01 11 2909808 2909808 C T SLC22A18AS Missense_Mutation p.A122T 0.11 deleterious_low_confidence(0.05) benign(0.001) TCGA-LN-A9FP-01 11 49831674 49831674 G C RP11-707M1.1 RNA 0.04 TCGA-LN-A9FP-01 11 5462136 5462136 C G OR51I1 Missense_Mutation p.L203F 0.12 tolerated(1) benign(0) TCGA-LN-A9FP-01 11 55135605 55135605 C A OR4A15 Silent p.S82S 0.06 TCGA-LN-A9FP-01 11 55322145 55322145 C T OR4C15 Silent p.F121F 0.12 TCGA-LN-A9FP-01 11 55432966 55432966 G C OR4C6 Silent p.V108V 0.10 TCGA-LN-A9FP-01 11 60971723 60971723 C A PGA3 Silent p.P67P 0.05 TCGA-LN-A9FP-01 11 61554131 61554131 C A MYRF 3'UTR 0.16 TCGA-LN-A9FP-01 11 61570536 61570536 G T FADS1 Missense_Mutation p.F432L 0.10 deleterious(0.02) benign(0.248) TCGA-LN-A9FP-01 11 61645986 61645986 C G FADS3 Missense_Mutation p.E249Q 0.10 tolerated(0.08) benign(0.329) TCGA-LN-A9FP-01 11 62760702 62760702 G T SLC22A8 3'UTR 0.08 TCGA-LN-A9FP-01 11 64535575 64535575 C A SF1 Intron 0.15 TCGA-LN-A9FP-01 11 6477889 6477889 C G TRIM3 Missense_Mutation p.R356P 0.18 deleterious(0) possibly_damaging(0.899) TCGA-LN-A9FP-01 11 65403111 65403111 C T PCNXL3 Missense_Mutation p.R1766C 0.11 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 11 67837676 67837676 G C CHKA Silent p.P283P 0.09 TCGA-LN-A9FP-01 11 68529067 68529067 C A CPT1A Missense_Mutation p.R655L 0.04 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 11 6942744 6942744 T A OR2D3 Missense_Mutation p.V171E 0.13 tolerated(0.27) possibly_damaging(0.821) TCGA-LN-A9FP-01 11 69588230 69588230 C G FGF4 Silent p.T156T 0.04 TCGA-LN-A9FP-01 11 75319308 75319308 T C MAP6 Missense_Mutation p.Q322R 0.09 deleterious(0) probably_damaging(0.977) TCGA-LN-A9FP-01 11 87030375 87030375 G T TMEM135 Missense_Mutation p.L400F 0.08 deleterious(0) probably_damaging(0.995) TCGA-LN-A9FP-01 11 89028425 89028425 G T TYR Missense_Mutation p.G494V 0.14 tolerated(0.63) benign(0.068) TCGA-LN-A9FP-01 11 94231384 94231384 G A ANKRD49 Missense_Mutation p.A136T 0.08 deleterious(0.02) possibly_damaging(0.897) TCGA-LN-A9FP-01 12 103872154 103872154 G C C12orf42 Silent p.T17T 0.09 TCGA-LN-A9FP-01 12 110628806 110628806 G A IFT81 Missense_Mutation p.E474K 0.09 deleterious(0.03) possibly_damaging(0.794) TCGA-LN-A9FP-01 12 111990213 111990213 C G ATXN2 Missense_Mutation p.A308P 0.05 probably_damaging(1) TCGA-LN-A9FP-01 12 112466912 112466912 T G NAA25 3'UTR 0.08 TCGA-LN-A9FP-01 12 112673449 112673449 C T HECTD4 Missense_Mutation p.V1716I 0.08 possibly_damaging(0.631) TCGA-LN-A9FP-01 12 115108860 115108860 C T TBX3 3'UTR 0.09 TCGA-LN-A9FP-01 12 117904627 117904627 C A KSR2 3'UTR 0.12 TCGA-LN-A9FP-01 12 120128245 120128245 C A CIT Missense_Mutation p.R1966L 0.14 deleterious_low_confidence(0.01) probably_damaging(0.946) TCGA-LN-A9FP-01 12 122720350 122720350 C G VPS33A Missense_Mutation p.D475H 0.05 deleterious(0) probably_damaging(0.948) TCGA-LN-A9FP-01 12 122723244 122723244 C T VPS33A Missense_Mutation p.A398T 0.10 tolerated(0.07) benign(0.029) TCGA-LN-A9FP-01 12 129180377 129180377 C A TMEM132C Missense_Mutation p.P553H 0.13 deleterious(0) possibly_damaging(0.834) TCGA-LN-A9FP-01 12 13232915 13232915 G C KIAA1467 Missense_Mutation p.R612T 0.08 deleterious(0) probably_damaging(0.972) TCGA-LN-A9FP-01 12 14577456 14577456 G T ATF7IP Missense_Mutation p.D203Y 0.10 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-LN-A9FP-01 12 2760889 2760889 G T CACNA1C Silent p.G1391G 0.14 TCGA-LN-A9FP-01 12 2921868 2921868 G A ITFG2 5'UTR 0.19 TCGA-LN-A9FP-01 12 3661874 3661874 C T PRMT8 Intron 0.06 TCGA-LN-A9FP-01 12 4737521 4737521 C T AKAP3 Missense_Mutation p.V183I 0.12 deleterious(0.01) possibly_damaging(0.593) TCGA-LN-A9FP-01 12 48919789 48919789 C G OR8S1 Silent p.A125A 0.14 TCGA-LN-A9FP-01 12 49427679 49427679 C T KMT2D Silent p.Q3603Q 0.07 TCGA-LN-A9FP-01 12 49443837 49443837 C A KMT2D Missense_Mutation p.Q1178H 0.06 benign(0.067) TCGA-LN-A9FP-01 12 49689244 49689244 C G PRPH Missense_Mutation p.N87K 0.09 deleterious(0.05) probably_damaging(0.997) TCGA-LN-A9FP-01 12 5023196 5023196 G T KCNA1 3'UTR 0.25 TCGA-LN-A9FP-01 12 50453616 50453616 G T ASIC1 Missense_Mutation p.S146I 0.10 tolerated(0.45) benign(0.009) TCGA-LN-A9FP-01 12 50744904 50744904 G C FAM186A Missense_Mutation p.S1904C 0.10 deleterious(0.01) possibly_damaging(0.639) TCGA-LN-A9FP-01 12 51865176 51865176 C G SLC4A8 Nonsense_Mutation p.Y588* 0.08 TCGA-LN-A9FP-01 12 52306268 52306268 G T ACVRL1 Missense_Mutation p.G4C 0.10 deleterious_low_confidence(0.01) benign(0.299) TCGA-LN-A9FP-01 12 52867433 52867433 C G KRT6C Missense_Mutation p.R30P 0.05 deleterious(0.01) unknown(0) TCGA-LN-A9FP-01 12 53165004 53165004 C A KRT76 Splice_Site p.X422_splice 0.10 TCGA-LN-A9FP-01 12 56552187 56552187 T C MYL6 Translation_Start_Site p.M1? 0.07 deleterious(0) benign(0.033) TCGA-LN-A9FP-01 12 57132266 57132266 C A PRIM1 Nonsense_Mutation p.E366* 0.16 TCGA-LN-A9FP-01 12 57686359 57686359 C G R3HDM2 Intron 0.07 TCGA-LN-A9FP-01 12 57943936 57943936 C T KIF5A 5'UTR 0.19 TCGA-LN-A9FP-01 12 64609507 64609507 C T C12orf66 Missense_Mutation p.E158K 0.06 deleterious(0.02) benign(0.377) TCGA-LN-A9FP-01 12 6571229 6571229 G A TAPBPL Missense_Mutation p.E441K 0.10 tolerated_low_confidence(0.08) benign(0) TCGA-LN-A9FP-01 12 6973255 6973255 G T USP5 Missense_Mutation p.G714C 0.08 deleterious(0) probably_damaging(0.988) TCGA-LN-A9FP-01 12 70986244 70986244 C T PTPRB Missense_Mutation p.G533E 0.09 deleterious(0) probably_damaging(0.998) TCGA-LN-A9FP-01 12 72866848 72866848 G T TRHDE Missense_Mutation p.W446L 0.09 deleterious(0) possibly_damaging(0.731) TCGA-LN-A9FP-01 12 80182458 80182458 T C PPP1R12A Silent p.L924L 0.09 TCGA-LN-A9FP-01 12 8077066 8077066 C G SLC2A3 Missense_Mutation p.M336I 0.05 deleterious(0.02) benign(0.063) TCGA-LN-A9FP-01 12 81762631 81762631 C A PPFIA2 Missense_Mutation p.R452M 0.09 deleterious(0.03) possibly_damaging(0.82) TCGA-LN-A9FP-01 12 89998032 89998032 C T ATP2B1 Missense_Mutation p.G845E 0.09 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 12 91348442 91348442 C G CCER1 Missense_Mutation p.W26C 0.11 deleterious(0) possibly_damaging(0.878) TCGA-LN-A9FP-01 12 93100603 93100603 T A C12orf74 Missense_Mutation p.W66R 0.09 tolerated(0.1) benign(0.019) TCGA-LN-A9FP-01 12 93100604 93100604 G T C12orf74 Missense_Mutation p.W66L 0.09 tolerated(1) benign(0) TCGA-LN-A9FP-01 12 93100605 93100605 G T C12orf74 Missense_Mutation p.W66C 0.09 deleterious(0.03) benign(0.161) TCGA-LN-A9FP-01 12 93802955 93802955 C A UBE2N 3'UTR 0.12 TCGA-LN-A9FP-01 13 27256798 27256798 G T WASF3 Silent p.P346P 0.09 TCGA-LN-A9FP-01 13 29599324 29599324 G T MTUS2 Silent p.L173L 0.12 TCGA-LN-A9FP-01 13 32812001 32812001 G T FRY Missense_Mutation p.G2099V 0.09 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 13 34410426 34410426 G T RFC3 Missense_Mutation p.M355I 0.07 tolerated(0.51) benign(0.001) TCGA-LN-A9FP-01 13 38357272 38357272 C T TRPC4 Missense_Mutation p.D67N 0.10 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 13 39424336 39424336 C A FREM2 Missense_Mutation p.P2181T 0.10 deleterious(0.03) probably_damaging(1) TCGA-LN-A9FP-01 13 39550710 39550710 C A STOML3 Nonsense_Mutation p.G66* 0.17 TCGA-LN-A9FP-01 13 41706476 41706476 C T KBTBD6 Missense_Mutation p.D58N 0.12 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 13 46549674 46549674 C A ZC3H13 Nonsense_Mutation p.E738* 0.13 TCGA-LN-A9FP-01 13 73651442 73651442 G A KLF5 3'UTR 0.05 TCGA-LN-A9FP-01 13 77619051 77619051 A T MYCBP2 3'UTR 0.12 TCGA-LN-A9FP-01 13 79173478 79173478 G A POU4F1 3'UTR 0.08 TCGA-LN-A9FP-01 14 101005081 101005081 C A BEGAIN Missense_Mutation p.R336L 0.21 deleterious(0) probably_damaging(0.922) TCGA-LN-A9FP-01 14 101531639 101531639 G T MIR409 RNA 0.06 TCGA-LN-A9FP-01 14 102027984 102027984 C A DIO3 Missense_Mutation p.R51S 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-LN-A9FP-01 14 102349849 102349849 C A PPP2R5C Missense_Mutation p.F224L 0.15 deleterious(0.03) probably_damaging(0.993) TCGA-LN-A9FP-01 14 102391625 102391625 G T PPP2R5C 3'UTR 0.11 TCGA-LN-A9FP-01 14 102815064 102815064 T A CINP Missense_Mutation p.R172W 0.15 deleterious(0.02) benign(0.013) TCGA-LN-A9FP-01 14 105416412 105416412 G A AHNAK2 Silent p.D1792D 0.06 TCGA-LN-A9FP-01 14 105418587 105418587 C A AHNAK2 Silent p.P1067P 0.11 TCGA-LN-A9FP-01 14 106967190 106967190 G T IGHV1-46 Silent p.I70I 0.13 TCGA-LN-A9FP-01 14 107049107 107049107 A T IGHV3-53 Missense_Mutation p.L5Q 0.07 deleterious_low_confidence(0) possibly_damaging(0.455) TCGA-LN-A9FP-01 14 22509256 22509256 C A TRAV20 Missense_Mutation p.P65H 0.12 deleterious(0.01) probably_damaging(0.927) TCGA-LN-A9FP-01 14 22592089 22592089 C A TRAV26-1 Silent p.S58S 0.19 TCGA-LN-A9FP-01 14 23896795 23896795 C A MYH7 Silent p.A629A 0.05 TCGA-LN-A9FP-01 14 24520164 24520164 C A LRRC16B 5'Flank 0.07 TCGA-LN-A9FP-01 14 24686403 24686403 T A NEDD8 Missense_Mutation p.Y59F 0.07 tolerated(0.05) benign(0.22) TCGA-LN-A9FP-01 14 25043995 25043995 G C CTSG Silent p.G75G 0.11 TCGA-LN-A9FP-01 14 29261363 29261363 G T C14orf23 Missense_Mutation p.G134W 0.10 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-LN-A9FP-01 14 34269169 34269169 G A NPAS3 Silent p.A552A 0.13 TCGA-LN-A9FP-01 14 37131038 37131038 G A PAX9 5'Flank 0.09 TCGA-LN-A9FP-01 14 38725480 38725480 C A CLEC14A 5'UTR 0.12 TCGA-LN-A9FP-01 14 45370114 45370114 G A C14orf28 Missense_Mutation p.R159Q 0.11 tolerated_low_confidence(0.39) benign(0.116) TCGA-LN-A9FP-01 14 57268306 57268306 C A OTX2 3'UTR 0.05 TCGA-LN-A9FP-01 14 60097305 60097305 G C RTN1 Intron 0.14 TCGA-LN-A9FP-01 14 60411431 60411431 G A LRRC9 Missense_Mutation p.R284Q 0.08 tolerated(0.1) benign(0.009) TCGA-LN-A9FP-01 14 67799567 67799567 C A MPP5 Missense_Mutation p.T641K 0.08 tolerated(0.29) possibly_damaging(0.591) TCGA-LN-A9FP-01 14 73190435 73190435 C G DPF3 Missense_Mutation p.R144T 0.09 deleterious(0.01) possibly_damaging(0.765) TCGA-LN-A9FP-01 14 74706337 74706337 G C VSX2 Missense_Mutation p.A25P 0.11 tolerated(0.46) benign(0.001) TCGA-LN-A9FP-01 14 78142116 78142116 C A ALKBH1 Missense_Mutation p.G208V 0.09 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 14 89016908 89016908 C A PTPN21 5'UTR 0.05 TCGA-LN-A9FP-01 14 89629022 89629022 C T FOXN3 Silent p.K403K 0.08 TCGA-LN-A9FP-01 14 90509479 90509479 C T TDP1 Missense_Mutation p.P607S 0.16 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 14 92470434 92470434 C G TRIP11 Missense_Mutation p.G1296R 0.11 deleterious(0.05) probably_damaging(0.995) TCGA-LN-A9FP-01 14 93305928 93305928 G T GOLGA5 3'UTR 0.12 TCGA-LN-A9FP-01 14 94405565 94405565 G C ASB2 Silent p.G502G 0.16 TCGA-LN-A9FP-01 14 95107765 95107765 C A SERPINA13P RNA 0.11 TCGA-LN-A9FP-01 14 96134723 96134723 C A TCL6 Intron 0.11 TCGA-LN-A9FP-01 15 102215856 102215856 T C TARSL2 Missense_Mutation p.T579A 0.07 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 15 20644851 20644851 C A HERC2P3 RNA 0.11 TCGA-LN-A9FP-01 15 26789559 26789559 G C GABRB3 3'UTR 0.16 TCGA-LN-A9FP-01 15 26790649 26790649 T C GABRB3 3'UTR 0.19 TCGA-LN-A9FP-01 15 28326850 28326850 C A OCA2 Silent p.G57G 0.23 TCGA-LN-A9FP-01 15 34439631 34439631 C A KATNBL1 Missense_Mutation p.R186S 0.06 deleterious(0.01) benign(0.207) TCGA-LN-A9FP-01 15 59373269 59373269 C T RNF111 Nonsense_Mutation p.Q695* 0.08 TCGA-LN-A9FP-01 15 78805449 78805449 C T HYKK Nonsense_Mutation p.Q7* 0.09 TCGA-LN-A9FP-01 15 78834886 78834886 A T PSMA4 Silent p.G36G 0.06 TCGA-LN-A9FP-01 15 84488679 84488679 G A ADAMTSL3 Silent p.P160P 0.08 TCGA-LN-A9FP-01 15 84539610 84539610 G A ADAMTSL3 Missense_Mutation p.G287S 0.07 deleterious(0) probably_damaging(0.996) TCGA-LN-A9FP-01 15 85326476 85326476 G T ZNF592 Silent p.P190P 0.07 TCGA-LN-A9FP-01 15 89400152 89400152 G C ACAN Missense_Mutation p.E1446Q 0.04 tolerated(0.55) possibly_damaging(0.824) TCGA-LN-A9FP-01 15 90347795 90347795 G T ANPEP Silent p.A317A 0.10 TCGA-LN-A9FP-01 15 91136924 91136924 G C CRTC3 Missense_Mutation p.E96D 0.04 tolerated(0.14) benign(0.298) TCGA-LN-A9FP-01 16 10864159 10864159 G C TVP23A Silent p.G204G 0.19 TCGA-LN-A9FP-01 16 1271505 1271505 C T CACNA1H 3'UTR 0.30 TCGA-LN-A9FP-01 16 1291473 1291473 G T TPSAB1 Missense_Mutation p.R91L 0.09 deleterious(0.04) probably_damaging(0.971) TCGA-LN-A9FP-01 16 19873269 19873269 C A GPRC5B Missense_Mutation p.G353C 0.13 deleterious(0) probably_damaging(0.998) TCGA-LN-A9FP-01 16 24135200 24135200 G T PRKCB Silent p.T321T 0.10 TCGA-LN-A9FP-01 16 28146539 28146539 C A XPO6 Missense_Mutation p.D481Y 0.12 deleterious(0) probably_damaging(0.995) TCGA-LN-A9FP-01 16 31087847 31087847 C T ZNF646 Missense_Mutation p.R68W 0.08 deleterious(0) possibly_damaging(0.855) TCGA-LN-A9FP-01 16 32266406 32266406 G T TP53TG3D 3'UTR 0.05 TCGA-LN-A9FP-01 16 336368 336368 C A PDIA2 Missense_Mutation p.Q379K 0.08 deleterious(0.02) possibly_damaging(0.459) TCGA-LN-A9FP-01 16 3640930 3640930 C A SLX4 Silent p.V903V 0.11 TCGA-LN-A9FP-01 16 3778029 3778029 C T CREBBP Missense_Mutation p.S2340N 0.06 unknown(0) TCGA-LN-A9FP-01 16 50069574 50069574 G T CNEP1R1 3'UTR 0.10 TCGA-LN-A9FP-01 16 56396854 56396854 C G AMFR Silent p.A633A 0.06 TCGA-LN-A9FP-01 16 69788599 69788599 C A NOB1 Nonsense_Mutation p.E32* 0.09 TCGA-LN-A9FP-01 16 70428966 70428966 C G ST3GAL2 Missense_Mutation p.R151P 0.07 possibly_damaging(0.885) TCGA-LN-A9FP-01 16 71101239 71101239 C A HYDIN Missense_Mutation p.V677L 0.09 possibly_damaging(0.769) TCGA-LN-A9FP-01 16 87970095 87970095 G C CA5A 5'UTR 0.07 TCGA-LN-A9FP-01 16 88052217 88052217 G T BANP Missense_Mutation p.G272V 0.07 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 17 10204930 10204930 G T MYH13 Missense_Mutation p.Q1920K 0.09 deleterious(0) benign(0.308) TCGA-LN-A9FP-01 17 10216024 10216024 G T MYH13 Missense_Mutation p.A1411E 0.06 deleterious(0.04) benign(0.081) TCGA-LN-A9FP-01 17 10296408 10296408 G A MYH8 Silent p.I1762I 0.07 TCGA-LN-A9FP-01 17 10432019 10432019 G T MYH2 Silent p.V1244V 0.08 TCGA-LN-A9FP-01 17 16612402 16612402 G T CCDC144A Missense_Mutation p.C344F 0.06 deleterious(0.04) possibly_damaging(0.831) TCGA-LN-A9FP-01 17 2599489 2599489 C A CLUH Silent p.A746A 0.08 TCGA-LN-A9FP-01 17 26820661 26820661 C A SLC13A2 Silent p.T366T 0.13 TCGA-LN-A9FP-01 17 26912936 26912936 T A SPAG5 Silent p.A562A 0.06 TCGA-LN-A9FP-01 17 29702638 29702638 G C NF1 3'UTR 0.08 TCGA-LN-A9FP-01 17 32483062 32483062 G T ASIC2 Missense_Mutation p.L164M 0.12 tolerated(0.1) possibly_damaging(0.491) TCGA-LN-A9FP-01 17 32687557 32687557 C A CCL1 3'UTR 0.10 TCGA-LN-A9FP-01 17 33690498 33690498 C A SLFN11 Missense_Mutation p.W110L 0.15 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 17 34071950 34071950 G T GAS2L2 Missense_Mutation p.P856T 0.07 tolerated(0.21) benign(0.113) TCGA-LN-A9FP-01 17 34398331 34398331 G T CCL18 Missense_Mutation p.R67L 0.10 deleterious(0.01) benign(0.175) TCGA-LN-A9FP-01 17 3850765 3850765 C A ATP2A3 Missense_Mutation p.V339L 0.09 deleterious(0) probably_damaging(0.995) TCGA-LN-A9FP-01 17 39521128 39521128 G C KRT33B Missense_Mutation p.R334G 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A9FP-01 17 39883692 39883692 C A HAP1 Intron 0.07 TCGA-LN-A9FP-01 17 41247865 41247865 T G BRCA1 Missense_Mutation p.K223T 0.09 deleterious(0) possibly_damaging(0.9) TCGA-LN-A9FP-01 17 41571102 41571102 C T DHX8 Missense_Mutation p.L354F 0.20 tolerated(0.15) benign(0.096) TCGA-LN-A9FP-01 17 42461461 42461461 C T ITGA2B Missense_Mutation p.G313R 0.10 deleterious(0) probably_damaging(0.994) TCGA-LN-A9FP-01 17 44144914 44144914 C A KANSL1 Splice_Site p.X551_splice 0.16 TCGA-LN-A9FP-01 17 4619267 4619267 G C ARRB2 Splice_Site p.X19_splice 0.08 TCGA-LN-A9FP-01 17 46801787 46801787 G C PRAC1 5'Flank 0.12 TCGA-LN-A9FP-01 17 47486521 47486521 C A PHB Splice_Site p.X132_splice 0.06 TCGA-LN-A9FP-01 17 48151811 48151811 G T ITGA3 Splice_Site p.X461_splice 0.19 TCGA-LN-A9FP-01 17 48599356 48599356 G C MYCBPAP Missense_Mutation p.D434H 0.12 deleterious(0.05) probably_damaging(0.963) TCGA-LN-A9FP-01 17 5085724 5085724 C T ZNF594 Missense_Mutation p.D610N 0.10 tolerated(0.68) possibly_damaging(0.881) TCGA-LN-A9FP-01 17 57474689 57474689 G T YPEL2 3'UTR 0.11 TCGA-LN-A9FP-01 17 58512743 58512743 G T C17orf64 3'Flank 0.10 TCGA-LN-A9FP-01 17 61557763 61557763 G T ACE Nonsense_Mutation p.E241* 0.12 TCGA-LN-A9FP-01 17 65688960 65688960 G T PITPNC1 Missense_Mutation p.G319C 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.575) TCGA-LN-A9FP-01 17 66040117 66040117 G T KPNA2 Missense_Mutation p.G365V 0.15 deleterious(0) probably_damaging(0.986) TCGA-LN-A9FP-01 17 66110635 66110635 G A LINC00674 RNA 0.12 TCGA-LN-A9FP-01 17 6901872 6901872 C A ALOX12 Silent p.R128R 0.14 TCGA-LN-A9FP-01 17 7096810 7096810 C A DLG4 Missense_Mutation p.C605F 0.06 deleterious(0) probably_damaging(0.995) TCGA-LN-A9FP-01 17 71437045 71437045 C A SDK2 Missense_Mutation p.D211Y 0.09 deleterious(0) possibly_damaging(0.781) TCGA-LN-A9FP-01 17 72927175 72927175 C T OTOP2 Missense_Mutation p.S482L 0.12 tolerated(0.35) benign(0.002) TCGA-LN-A9FP-01 17 74392719 74392719 C A UBE2O Missense_Mutation p.V767L 0.11 tolerated(0.31) benign(0.002) TCGA-LN-A9FP-01 17 7577058 7577058 C A TP53 Nonsense_Mutation p.E294* 0.07 TCGA-LN-A9FP-01 17 77082110 77082110 G A ENGASE Silent p.E637E 0.06 TCGA-LN-A9FP-01 17 78117984 78117984 C G EIF4A3 Missense_Mutation p.D77H 0.21 deleterious(0) probably_damaging(0.995) TCGA-LN-A9FP-01 17 79079945 79079945 A T BAIAP2 Missense_Mutation p.S446C 0.09 deleterious(0.04) possibly_damaging(0.75) TCGA-LN-A9FP-01 17 79205458 79205458 C G ENTHD2 Missense_Mutation p.Q245H 0.21 deleterious(0) probably_damaging(0.986) TCGA-LN-A9FP-01 17 80043514 80043514 G A FASN Silent p.L1322L 0.07 TCGA-LN-A9FP-01 17 80790122 80790122 G T ZNF750 Nonsense_Mutation p.S70* 0.28 TCGA-LN-A9FP-01 17 8215691 8215691 C A ARHGEF15 Missense_Mutation p.P112T 0.11 tolerated_low_confidence(0.08) benign(0.008) TCGA-LN-A9FP-01 18 14105606 14105606 C G ZNF519 Missense_Mutation p.Q311H 0.07 tolerated(0.07) benign(0.059) TCGA-LN-A9FP-01 18 19997426 19997426 A T CTAGE1 Missense_Mutation p.C117S 0.06 tolerated(0.45) benign(0.004) TCGA-LN-A9FP-01 18 63489458 63489458 A T CDH7 Missense_Mutation p.N256I 0.06 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 18 6955526 6955526 C A LAMA1 Intron 0.12 TCGA-LN-A9FP-01 19 10461829 10461829 C G TYK2 Missense_Mutation p.E1110Q 0.08 deleterious(0.03) possibly_damaging(0.745) TCGA-LN-A9FP-01 19 10463209 10463209 C G TYK2 Silent p.L1073L 0.07 TCGA-LN-A9FP-01 19 12430083 12430083 C A ZNF563 Silent p.P252P 0.07 TCGA-LN-A9FP-01 19 13410024 13410024 G T CACNA1A Missense_Mutation p.T808K 0.08 benign(0.005) TCGA-LN-A9FP-01 19 14578588 14578588 C A PKN1 Silent p.R629R 0.09 TCGA-LN-A9FP-01 19 1531846 1531846 G C PLK5 Silent p.T226T 0.09 TCGA-LN-A9FP-01 19 15582811 15582811 G T PGLYRP2 Missense_Mutation p.H411Q 0.09 deleterious(0) probably_damaging(0.959) TCGA-LN-A9FP-01 19 16883997 16883997 C A NWD1 Missense_Mutation p.P824Q 0.08 deleterious(0.01) probably_damaging(0.985) TCGA-LN-A9FP-01 19 17088273 17088273 G T CPAMD8 Missense_Mutation p.P602T 0.13 deleterious(0) probably_damaging(0.962) TCGA-LN-A9FP-01 19 17342983 17342983 T C NR2F6 3'UTR 0.05 TCGA-LN-A9FP-01 19 17379661 17379661 G T BABAM1 Nonsense_Mutation p.E16* 0.10 TCGA-LN-A9FP-01 19 19040124 19040124 C A HOMER3 3'UTR 0.07 TCGA-LN-A9FP-01 19 20002567 20002567 C A ZNF253 Missense_Mutation p.L171I 0.11 tolerated(0.21) benign(0.007) TCGA-LN-A9FP-01 19 2116224 2116224 G T AP3D1 Missense_Mutation p.S685R 0.05 tolerated(0.1) possibly_damaging(0.651) TCGA-LN-A9FP-01 19 22574497 22574497 C A ZNF98 Nonsense_Mutation p.G514* 0.11 TCGA-LN-A9FP-01 19 3157847 3157847 C T GNA15 Missense_Mutation p.S289F 0.05 deleterious(0.02) probably_damaging(0.972) TCGA-LN-A9FP-01 19 33119650 33119650 C T ANKRD27 Missense_Mutation p.D439N 0.12 tolerated(0.59) possibly_damaging(0.822) TCGA-LN-A9FP-01 19 35533176 35533176 C A HPN 5'UTR 0.10 TCGA-LN-A9FP-01 19 3590979 3590979 C G GIPC3 3'UTR 0.05 TCGA-LN-A9FP-01 19 36269201 36269201 G T ARHGAP33 Missense_Mutation p.R70L 0.07 deleterious_low_confidence(0.03) benign(0.433) TCGA-LN-A9FP-01 19 36573985 36573985 C G WDR62 Nonsense_Mutation p.Y464* 0.07 TCGA-LN-A9FP-01 19 38383272 38383272 G C WDR87 Missense_Mutation p.S985C 0.10 benign(0.179) TCGA-LN-A9FP-01 19 38385259 38385259 C A WDR87 Missense_Mutation p.G323C 0.12 probably_damaging(0.999) TCGA-LN-A9FP-01 19 38905515 38905515 G T RASGRP4 Silent p.A401A 0.10 TCGA-LN-A9FP-01 19 39406737 39406737 C A SARS2 Missense_Mutation p.Q431H 0.09 deleterious(0) possibly_damaging(0.699) TCGA-LN-A9FP-01 19 40398279 40398279 C A FCGBP Missense_Mutation p.A2230S 0.11 possibly_damaging(0.515) TCGA-LN-A9FP-01 19 41522787 41522787 C T CYP2B6 3'UTR 0.21 TCGA-LN-A9FP-01 19 42492163 42492163 C A ATP1A3 Silent p.L107L 0.10 TCGA-LN-A9FP-01 19 43358229 43358229 A G PSG10P RNA 0.03 TCGA-LN-A9FP-01 19 45130811 45130811 G T IGSF23 Silent p.G162G 0.09 TCGA-LN-A9FP-01 19 45262823 45262823 G A BCL3 Missense_Mutation p.R439Q 0.07 tolerated_low_confidence(0.12) unknown(0) TCGA-LN-A9FP-01 19 47124484 47124484 C G PTGIR 3'UTR 0.05 TCGA-LN-A9FP-01 19 47124858 47124858 G A PTGIR Silent p.F280F 0.05 TCGA-LN-A9FP-01 19 48537601 48537601 C G CABP5 Missense_Mutation p.G123R 0.06 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 19 4961536 4961536 G T UHRF1 RNA 0.17 TCGA-LN-A9FP-01 19 50771559 50771559 G A MYH14 Missense_Mutation p.G990S 0.05 tolerated(0.08) benign(0.003) TCGA-LN-A9FP-01 19 51986279 51986279 G C CEACAM18 Missense_Mutation p.D289H 0.06 deleterious(0.01) probably_damaging(0.965) TCGA-LN-A9FP-01 19 53792962 53792962 C A BIRC8 Missense_Mutation p.M222I 0.09 tolerated(0.92) benign(0.012) TCGA-LN-A9FP-01 19 53959386 53959386 G C ZNF761 RNA 0.05 TCGA-LN-A9FP-01 19 54198487 54198487 G A MIR519B RNA 0.04 TCGA-LN-A9FP-01 19 54577262 54577262 C T TARM1 Missense_Mutation p.D190N 0.10 tolerated(0.07) possibly_damaging(0.449) TCGA-LN-A9FP-01 19 54744789 54744789 C A LILRA6 Silent p.G291G 0.06 TCGA-LN-A9FP-01 19 54872553 54872553 G T LAIR1 Missense_Mutation p.Q112K 0.11 tolerated(0.28) benign(0.004) TCGA-LN-A9FP-01 19 54965711 54965711 C T LENG8 Missense_Mutation p.H177Y 0.10 tolerated_low_confidence(0.14) benign(0.332) TCGA-LN-A9FP-01 19 55349038 55349038 C A KIR2DS4 Missense_Mutation p.H26Q 0.07 tolerated_low_confidence(0.22) benign(0.44) TCGA-LN-A9FP-01 19 57670600 57670600 G T DUXA Missense_Mutation p.P76Q 0.14 deleterious(0.01) benign(0.216) TCGA-LN-A9FP-01 19 57932722 57932722 A G ZNF17 Missense_Mutation p.Y621C 0.07 tolerated(0.18) benign(0.003) TCGA-LN-A9FP-01 19 5941834 5941834 C A RANBP3 Missense_Mutation p.G99C 0.12 tolerated_low_confidence(0.07) probably_damaging(0.923) TCGA-LN-A9FP-01 19 6495115 6495115 G T TUBB4A 3'UTR 0.10 TCGA-LN-A9FP-01 19 6971215 6971215 G T EMR4P RNA 0.12 TCGA-LN-A9FP-01 19 6972268 6972268 C A EMR4P RNA 0.09 TCGA-LN-A9FP-01 19 7589895 7589895 G T MCOLN1 Missense_Mutation p.G27V 0.05 deleterious(0.03) benign(0.002) TCGA-LN-A9FP-01 19 7928689 7928689 G C EVI5L 3'Flank 0.05 TCGA-LN-A9FP-01 19 7934933 7934933 G T CTD-3193O13.9 Missense_Mutation p.P1066H 0.15 unknown(0) TCGA-LN-A9FP-01 19 815235 815235 G T LPPR3 Silent p.A118A 0.22 TCGA-LN-A9FP-01 19 8174147 8174147 C G FBN3 Missense_Mutation p.G1528R 0.16 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 19 8808653 8808653 C A ACTL9 Silent p.L133L 0.19 TCGA-LN-A9FP-01 1 112998691 112998691 G T CTTNBP2NL Missense_Mutation p.A193S 0.11 deleterious(0.01) possibly_damaging(0.622) TCGA-LN-A9FP-01 1 114442519 114442519 C A AP4B1 Intron 0.14 TCGA-LN-A9FP-01 1 115604810 115604810 C A TSPAN2 Silent p.V72V 0.05 TCGA-LN-A9FP-01 1 11576105 11576105 C A PTCHD2 Missense_Mutation p.H546N 0.08 deleterious(0.01) probably_damaging(0.919) TCGA-LN-A9FP-01 1 11766385 11766385 C A DRAXIN Missense_Mutation p.L24M 0.09 tolerated(0.13) possibly_damaging(0.839) TCGA-LN-A9FP-01 1 11766386 11766386 T A DRAXIN Missense_Mutation p.L24Q 0.09 tolerated(0.23) possibly_damaging(0.779) TCGA-LN-A9FP-01 1 119964835 119964835 G T HSD3B2 Missense_Mutation p.R237S 0.13 deleterious(0) probably_damaging(0.938) TCGA-LN-A9FP-01 1 12835017 12835017 C A PRAMEF12 Missense_Mutation p.L3I 0.09 tolerated(0.92) benign(0.004) TCGA-LN-A9FP-01 1 12954931 12954931 C A PRAMEF10 Nonsense_Mutation p.G118* 0.05 TCGA-LN-A9FP-01 1 142711340 142711340 T A RP11-417J8.6 RNA 0.12 TCGA-LN-A9FP-01 1 142803954 142803954 A G RP11-423O2.5 RNA 0.11 TCGA-LN-A9FP-01 1 145533913 145533913 G T ITGA10 Missense_Mutation p.G520V 0.09 deleterious(0.01) probably_damaging(1) TCGA-LN-A9FP-01 1 149858798 149858798 G A HIST2H2AC Missense_Mutation p.E92K 0.08 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-LN-A9FP-01 1 151133305 151133305 C A LYSMD1 3'UTR 0.14 TCGA-LN-A9FP-01 1 152281019 152281019 G A FLG Nonsense_Mutation p.Q2115* 0.06 TCGA-LN-A9FP-01 1 152326947 152326947 G T FLG2 Missense_Mutation p.H1105Q 0.15 unknown(0) TCGA-LN-A9FP-01 1 152648660 152648660 G A LCE2C Missense_Mutation p.G57S 0.13 tolerated_low_confidence(0.49) unknown(0) TCGA-LN-A9FP-01 1 153516390 153516390 C G S100A4 Missense_Mutation p.D51H 0.17 deleterious(0.02) benign(0.133) TCGA-LN-A9FP-01 1 153520323 153520323 C T S100A3 Splice_Site p.X48_splice 0.13 TCGA-LN-A9FP-01 1 155917017 155917017 C G ARHGEF2 3'UTR 0.12 TCGA-LN-A9FP-01 1 156279014 156279014 C A CCT3 Silent p.G538G 0.08 TCGA-LN-A9FP-01 1 156815775 156815775 G C INSRR Silent p.G649G 0.12 TCGA-LN-A9FP-01 1 16344400 16344400 G A HSPB7 Missense_Mutation p.S20F 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.462) TCGA-LN-A9FP-01 1 16357020 16357020 G T CLCNKA Silent p.L491L 0.06 TCGA-LN-A9FP-01 1 167792265 167792265 C A ADCY10 Missense_Mutation p.L1383F 0.10 tolerated(0.08) benign(0.32) TCGA-LN-A9FP-01 1 168154083 168154083 G T TIPRL Missense_Mutation p.K117N 0.10 deleterious(0.02) possibly_damaging(0.544) TCGA-LN-A9FP-01 1 170983336 170983336 C T MROH9 Missense_Mutation p.P559S 0.06 tolerated(0.06) possibly_damaging(0.821) TCGA-LN-A9FP-01 1 171759717 171759717 G C METTL13 Missense_Mutation p.A479P 0.07 deleterious(0.01) possibly_damaging(0.904) TCGA-LN-A9FP-01 1 174517040 174517040 G T RABGAP1L Intron 0.07 TCGA-LN-A9FP-01 1 185260267 185260267 C A SWT1 3'UTR 0.26 TCGA-LN-A9FP-01 1 197316469 197316469 G T CRB1 Splice_Site p.X283_splice 0.12 TCGA-LN-A9FP-01 1 200144178 200144178 G T NR5A2 3'UTR 0.11 TCGA-LN-A9FP-01 1 202532001 202532001 C A PPP1R12B Missense_Mutation p.A868D 0.06 deleterious(0.01) possibly_damaging(0.716) TCGA-LN-A9FP-01 1 203669405 203669405 G C ATP2B4 Missense_Mutation p.G241R 0.18 deleterious(0.02) probably_damaging(1) TCGA-LN-A9FP-01 1 203743063 203743063 G C LAX1 Missense_Mutation p.A151P 0.23 tolerated(0.14) possibly_damaging(0.695) TCGA-LN-A9FP-01 1 206945647 206945647 C A IL10 Missense_Mutation p.R45L 0.13 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 1 207110474 207110474 C T PIGR Silent p.S337S 0.12 TCGA-LN-A9FP-01 1 207307755 207307755 G T C4BPA Missense_Mutation p.C364F 0.04 deleterious(0) probably_damaging(0.989) TCGA-LN-A9FP-01 1 214814241 214814241 G T CENPF Nonsense_Mutation p.E854* 0.08 TCGA-LN-A9FP-01 1 216262371 216262371 C A USH2A Silent p.L1623L 0.05 TCGA-LN-A9FP-01 1 216595578 216595578 C T USH2A Missense_Mutation p.R34Q 0.14 benign(0) TCGA-LN-A9FP-01 1 223718144 223718144 G T CAPN8 Silent p.L612L 0.14 TCGA-LN-A9FP-01 1 224001971 224001971 C A TP53BP2 Missense_Mutation p.R87L 0.08 deleterious(0) probably_damaging(0.998) TCGA-LN-A9FP-01 1 225519255 225519255 A T DNAH14 Missense_Mutation p.L3187F 0.08 probably_damaging(0.999) TCGA-LN-A9FP-01 1 22839481 22839481 G T ZBTB40 Silent p.G842G 0.08 TCGA-LN-A9FP-01 1 228495817 228495817 G T OBSCN Nonsense_Mutation p.E5115* 0.07 TCGA-LN-A9FP-01 1 231954771 231954771 G T DISC1 Intron 0.19 TCGA-LN-A9FP-01 1 234534271 234534271 G A TARBP1 Missense_Mutation p.S1367L 0.09 deleterious(0) possibly_damaging(0.548) TCGA-LN-A9FP-01 1 237666780 237666780 C A RYR2 Missense_Mutation p.T863K 0.06 probably_damaging(0.936) TCGA-LN-A9FP-01 1 248201852 248201852 G T OR2L2 Nonsense_Mutation p.G95* 0.12 TCGA-LN-A9FP-01 1 248224700 248224700 C A OR2L3 Silent p.T239T 0.15 TCGA-LN-A9FP-01 1 248436323 248436323 G T OR2T33 Missense_Mutation p.S265Y 0.05 deleterious(0) probably_damaging(0.988) TCGA-LN-A9FP-01 1 248525025 248525025 G A OR2T4 Missense_Mutation p.G48E 0.11 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 1 28293102 28293102 G A XKR8 Silent p.P193P 0.07 TCGA-LN-A9FP-01 1 32682383 32682383 C A TMEM234 3'UTR 0.11 TCGA-LN-A9FP-01 1 3421858 3421858 C A MEGF6 Missense_Mutation p.C701F 0.07 deleterious(0) probably_damaging(0.991) TCGA-LN-A9FP-01 1 38166128 38166128 G T CDCA8 Missense_Mutation p.D120Y 0.17 deleterious(0.01) benign(0.44) TCGA-LN-A9FP-01 1 39823254 39823254 G A MACF1 Missense_Mutation p.E1816K 0.06 probably_damaging(0.999) TCGA-LN-A9FP-01 1 40236196 40236196 C T OXCT2 Silent p.E244E 0.12 TCGA-LN-A9FP-01 1 46033797 46033797 G T AKR1A1 Missense_Mutation p.R167L 0.14 tolerated(0.48) benign(0.003) TCGA-LN-A9FP-01 1 46978148 46978148 C A DMBX1 Silent p.L372L 0.12 TCGA-LN-A9FP-01 1 48694895 48694895 C T SLC5A9 Intron 0.10 TCGA-LN-A9FP-01 1 50661318 50661318 C T ELAVL4 Silent p.P215P 0.09 TCGA-LN-A9FP-01 1 52956462 52956462 C A ZCCHC11 Missense_Mutation p.D444Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 1 55145629 55145629 G T MROH7 Missense_Mutation p.Q764H 0.09 tolerated(0.05) benign(0.221) TCGA-LN-A9FP-01 1 75708676 75708676 T C SLC44A5 Silent p.P122P 0.06 TCGA-LN-A9FP-01 1 75708677 75708677 G T SLC44A5 Missense_Mutation p.P122Q 0.07 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 1 87805312 87805312 T A LMO4 Silent p.L110L 0.07 TCGA-LN-A9FP-01 20 10030541 10030541 G T ANKEF1 Missense_Mutation p.A442S 0.07 tolerated(0.73) benign(0.013) TCGA-LN-A9FP-01 20 18794792 18794792 G T SCP2D1 Silent p.P111P 0.08 TCGA-LN-A9FP-01 20 2605001 2605001 C A TMC2 Silent p.L755L 0.07 TCGA-LN-A9FP-01 20 30497560 30497560 G T TTLL9 Missense_Mutation p.M113I 0.09 tolerated(0.06) benign(0.097) TCGA-LN-A9FP-01 20 30818726 30818726 G T POFUT1 Missense_Mutation p.M280I 0.09 tolerated(0.4) benign(0.021) TCGA-LN-A9FP-01 20 31592147 31592147 C A SUN5 5'UTR 0.14 TCGA-LN-A9FP-01 20 31596364 31596364 C A BPIFB2 5'UTR 0.13 TCGA-LN-A9FP-01 20 31606541 31606541 C A BPIFB2 Silent p.T256T 0.22 TCGA-LN-A9FP-01 20 31767424 31767424 C A BPIFA2 Silent p.I220I 0.12 TCGA-LN-A9FP-01 20 34055253 34055253 G T CEP250 Nonsense_Mutation p.E242* 0.11 TCGA-LN-A9FP-01 20 35749434 35749434 G A MROH8 Missense_Mutation p.A688V 0.14 tolerated(0.49) probably_damaging(0.999) TCGA-LN-A9FP-01 20 43942722 43942722 G T RBPJL Missense_Mutation p.V269F 0.08 deleterious(0.02) possibly_damaging(0.793) TCGA-LN-A9FP-01 20 44856180 44856180 C A CDH22 Missense_Mutation p.G213C 0.10 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 20 46313304 46313304 C A SULF2 Silent p.A253A 0.06 TCGA-LN-A9FP-01 20 51872528 51872528 G T TSHZ2 Missense_Mutation p.R844L 0.14 deleterious(0) probably_damaging(0.998) TCGA-LN-A9FP-01 20 56226924 56226924 A T PMEPA1 3'UTR 0.13 TCGA-LN-A9FP-01 20 60499458 60499458 G T CDH4 Silent p.T565T 0.08 TCGA-LN-A9FP-01 20 61167653 61167653 C A C20orf166 Silent p.V41V 0.09 TCGA-LN-A9FP-01 20 61879034 61879034 C G NKAIN4 Missense_Mutation p.G123R 0.08 tolerated(0.55) benign(0.202) TCGA-LN-A9FP-01 20 62309668 62309668 G C RTEL1 Missense_Mutation p.G360R 0.12 tolerated(0.05) possibly_damaging(0.859) TCGA-LN-A9FP-01 20 62737512 62737512 C G NPBWR2 Missense_Mutation p.V225L 0.15 tolerated(0.11) benign(0.168) TCGA-LN-A9FP-01 20 8865325 8865325 G T PLCB1 3'UTR 0.09 TCGA-LN-A9FP-01 21 33060625 33060625 G C SCAF4 Missense_Mutation p.P680A 0.07 unknown(0) TCGA-LN-A9FP-01 21 34003657 34003657 G C SYNJ1 Nonsense_Mutation p.S1496* 0.06 TCGA-LN-A9FP-01 21 40777894 40777894 G T LCA5L Missense_Mutation p.H643N 0.06 tolerated(1) benign(0) TCGA-LN-A9FP-01 22 23063527 23063527 C G IGLV3-19 Missense_Mutation p.D78E 0.08 tolerated(0.6) benign(0.026) TCGA-LN-A9FP-01 22 32293528 32293528 G T DEPDC5 Missense_Mutation p.G1413W 0.06 deleterious(0.03) probably_damaging(0.927) TCGA-LN-A9FP-01 22 39222664 39222664 C A NPTXR Silent p.L313L 0.12 TCGA-LN-A9FP-01 22 39815583 39815583 C T TAB1 Missense_Mutation p.R242W 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-LN-A9FP-01 2 100266105 100266105 G T AFF3 Silent p.L414L 0.13 TCGA-LN-A9FP-01 2 103431207 103431207 G T TMEM182 Missense_Mutation p.G157V 0.12 deleterious(0) probably_damaging(0.969) TCGA-LN-A9FP-01 2 11591836 11591836 C A E2F6 Missense_Mutation p.E159D 0.12 tolerated(0.1) benign(0.411) TCGA-LN-A9FP-01 2 130909684 130909684 C G SMPD4 3'UTR 0.04 TCGA-LN-A9FP-01 2 132235781 132235781 C T TUBA3D Silent p.I16I 0.07 TCGA-LN-A9FP-01 2 135705377 135705377 G T CCNT2 Missense_Mutation p.C204F 0.10 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 2 136482543 136482543 G A R3HDM1 3'UTR 0.09 TCGA-LN-A9FP-01 2 140990291 140990291 G C LRP1B 3'UTR 0.10 TCGA-LN-A9FP-01 2 141128402 141128402 C A LRP1B Missense_Mutation p.V3629L 0.08 benign(0.097) TCGA-LN-A9FP-01 2 162480885 162480885 G A SLC4A10 5'Flank 0.08 TCGA-LN-A9FP-01 2 166847874 166847874 C A SCN1A Nonsense_Mutation p.E1971* 0.10 TCGA-LN-A9FP-01 2 166848261 166848261 G C SCN1A Missense_Mutation p.P1842A 0.06 tolerated(0.7) benign(0.002) TCGA-LN-A9FP-01 2 168102950 168102950 A T XIRP2 Missense_Mutation p.E1683V 0.10 probably_damaging(1) TCGA-LN-A9FP-01 2 176989292 176989292 C T HOXD9 3'UTR 0.05 TCGA-LN-A9FP-01 2 179479481 179479481 C G TTN Splice_Site p.X16254_splice 0.06 TCGA-LN-A9FP-01 2 18766134 18766134 G C NT5C1B Silent p.P183P 0.05 TCGA-LN-A9FP-01 2 204304271 204304271 C T RAPH1 Silent p.Q1214Q 0.05 TCGA-LN-A9FP-01 2 21230801 21230801 G C APOB Missense_Mutation p.S2980C 0.11 benign(0.174) TCGA-LN-A9FP-01 2 219825902 219825902 C G CDK5R2 3'UTR 0.12 TCGA-LN-A9FP-01 2 224866556 224866556 T A SERPINE2 Missense_Mutation p.H33L 0.12 tolerated(0.39) benign(0.001) TCGA-LN-A9FP-01 2 228883671 228883671 G T SPHKAP Nonsense_Mutation p.Y633* 0.11 TCGA-LN-A9FP-01 2 238688092 238688092 G C LRRFIP1 Missense_Mutation p.E614Q 0.08 deleterious(0) possibly_damaging(0.682) TCGA-LN-A9FP-01 2 240002840 240002840 C A HDAC4 Missense_Mutation p.G896C 0.10 deleterious(0) probably_damaging(0.998) TCGA-LN-A9FP-01 2 241656652 241656652 C A KIF1A 3'UTR 0.06 TCGA-LN-A9FP-01 2 242122273 242122273 G T PPP1R7 3'UTR 0.07 TCGA-LN-A9FP-01 2 242187659 242187659 C T HDLBP Silent p.E539E 0.06 TCGA-LN-A9FP-01 2 242195807 242195807 C T HDLBP Missense_Mutation p.R222H 0.13 tolerated(0.1) possibly_damaging(0.835) TCGA-LN-A9FP-01 2 242196027 242196027 G A HDLBP Silent p.I215I 0.05 TCGA-LN-A9FP-01 2 242196030 242196030 G A HDLBP Silent p.L214L 0.05 TCGA-LN-A9FP-01 2 25994388 25994388 G C ASXL2 Nonsense_Mutation p.S142* 0.12 TCGA-LN-A9FP-01 2 27015647 27015647 C T CENPA Silent p.F78F 0.10 TCGA-LN-A9FP-01 2 27016185 27016185 C G CENPA 3'UTR 0.09 TCGA-LN-A9FP-01 2 28820876 28820876 G T PLB1 Nonsense_Mutation p.G776* 0.11 TCGA-LN-A9FP-01 2 3193279 3193279 C A TSSC1 Missense_Mutation p.K330N 0.27 tolerated(0.18) benign(0.021) TCGA-LN-A9FP-01 2 33585729 33585729 G C LTBP1 Missense_Mutation p.A1356P 0.13 tolerated(0.09) probably_damaging(0.963) TCGA-LN-A9FP-01 2 33951234 33951234 C A AC009499.1 Intron 0.12 TCGA-LN-A9FP-01 2 50148877 50148877 C A NRXN1 3'UTR 0.07 TCGA-LN-A9FP-01 2 51259288 51259290 AGG - NRXN1 5'UTR 0.29 TCGA-LN-A9FP-01 2 54880793 54880793 G T SPTBN1 Silent p.A1875A 0.06 TCGA-LN-A9FP-01 2 55762900 55762900 G A CCDC104 Splice_Site p.X179_splice 0.06 TCGA-LN-A9FP-01 2 65454994 65454994 G C ACTR2 5'UTR 0.08 TCGA-LN-A9FP-01 2 69691701 69691701 A C AAK1 3'Flank 0.12 TCGA-LN-A9FP-01 2 74275075 74275075 G T TET3 Silent p.L542L 0.10 TCGA-LN-A9FP-01 2 77749387 77749387 G T LRRTM4 5'UTR 0.09 TCGA-LN-A9FP-01 2 85661959 85661959 C A SH2D6 5'UTR 0.15 TCGA-LN-A9FP-01 2 85922542 85922542 C A GNLY Missense_Mutation p.P51H 0.11 deleterious(0) probably_damaging(0.99) TCGA-LN-A9FP-01 2 88857134 88857134 T A EIF2AK3 3'UTR 0.20 TCGA-LN-A9FP-01 2 89185562 89185562 G T IGKV4-1 Missense_Mutation p.D86Y 0.08 deleterious(0) probably_damaging(0.965) TCGA-LN-A9FP-01 2 90259789 90259789 C A IGKV1D-8 Missense_Mutation p.P6T 0.08 deleterious(0) probably_damaging(0.927) TCGA-LN-A9FP-01 2 99454683 99454683 C A KIAA1211L Silent p.P46P 0.16 TCGA-LN-A9FP-01 3 112545840 112545840 C G CD200R1L Missense_Mutation p.G227R 0.06 deleterious(0.01) possibly_damaging(0.518) TCGA-LN-A9FP-01 3 113627935 113627935 A G GRAMD1C Missense_Mutation p.D307G 0.06 deleterious(0.02) benign(0.011) TCGA-LN-A9FP-01 3 132441160 132441160 C A NPHP3 Nonsense_Mutation p.E14* 0.16 TCGA-LN-A9FP-01 3 142840873 142840873 G T CHST2 Silent p.T405T 0.16 TCGA-LN-A9FP-01 3 150460351 150460351 C T SIAH2 Silent p.V184V 0.08 TCGA-LN-A9FP-01 3 150804523 150804523 C T MED12L 5'Flank 0.15 TCGA-LN-A9FP-01 3 151046747 151046747 A T P2RY13 Missense_Mutation p.S33T 0.08 tolerated(0.13) benign(0.013) TCGA-LN-A9FP-01 3 161216961 161216961 C G OTOL1 Missense_Mutation p.P123A 0.05 tolerated(0.2) unknown(0) TCGA-LN-A9FP-01 3 169639075 169639075 G T SAMD7 Missense_Mutation p.V54F 0.19 deleterious(0.01) benign(0.406) TCGA-LN-A9FP-01 3 169663272 169663272 C A RP11-379K17.4 RNA 0.50 TCGA-LN-A9FP-01 3 169985788 169985788 G T PRKCI Missense_Mutation p.R150S 0.20 deleterious(0.04) benign(0.13) TCGA-LN-A9FP-01 3 176742204 176742204 C G TBL1XR1 3'UTR 0.19 TCGA-LN-A9FP-01 3 183777335 183777335 C A HTR3C Missense_Mutation p.R278S 0.06 deleterious(0.01) probably_damaging(0.91) TCGA-LN-A9FP-01 3 193052744 193052744 G T ATP13A5 Missense_Mutation p.P363H 0.42 tolerated(0.28) benign(0.25) TCGA-LN-A9FP-01 3 195517903 195517903 G T MUC4 Missense_Mutation p.S183Y 0.20 unknown(0) TCGA-LN-A9FP-01 3 28364948 28364948 C G CMC1 3'UTR 0.03 TCGA-LN-A9FP-01 3 53766862 53766862 G T CACNA1D Nonsense_Mutation p.E852* 0.06 TCGA-LN-A9FP-01 3 8983397 8983397 C A RAD18 Missense_Mutation p.V120L 0.07 tolerated(0.34) benign(0.005) TCGA-LN-A9FP-01 3 9726928 9726928 G A MTMR14 Silent p.E387E 0.11 TCGA-LN-A9FP-01 3 97851625 97851625 C G OR5H1 Missense_Mutation p.F28L 0.07 deleterious(0.01) benign(0.32) TCGA-LN-A9FP-01 4 100350696 100350696 C A ADH7 Missense_Mutation p.R58L 0.10 deleterious(0) benign(0.416) TCGA-LN-A9FP-01 4 103518697 103518697 G A NFKB1 Missense_Mutation p.A506T 0.19 tolerated(0.12) possibly_damaging(0.674) TCGA-LN-A9FP-01 4 107248633 107248633 G C AIMP1 Missense_Mutation p.E69D 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A9FP-01 4 113568845 113568845 G C LARP7 Splice_Site p.X340_splice 0.15 TCGA-LN-A9FP-01 4 119754883 119754883 C G SEC24D 5'UTR 0.14 TCGA-LN-A9FP-01 4 122774232 122774232 C A BBS7 Missense_Mutation p.C243F 0.11 deleterious(0) probably_damaging(0.93) TCGA-LN-A9FP-01 4 123302179 123302179 C A ADAD1 Missense_Mutation p.L69I 0.13 tolerated(0.45) benign(0.002) TCGA-LN-A9FP-01 4 1343540 1343540 G T UVSSA Silent p.L109L 0.19 TCGA-LN-A9FP-01 4 1343542 1343542 G T UVSSA Missense_Mutation p.R110M 0.18 deleterious(0) probably_damaging(0.95) TCGA-LN-A9FP-01 4 138452880 138452880 G C PCDH18 Missense_Mutation p.F121L 0.07 tolerated(0.69) benign(0.196) TCGA-LN-A9FP-01 4 159627792 159627792 G C ETFDH Missense_Mutation p.E494Q 0.05 tolerated(0.24) benign(0.005) TCGA-LN-A9FP-01 4 166149971 166149971 G T KLHL2 Silent p.L59L 0.07 TCGA-LN-A9FP-01 4 185637644 185637644 C T CENPU Silent p.E175E 0.06 TCGA-LN-A9FP-01 4 186361817 186361817 G C C4orf47 Missense_Mutation p.E220Q 0.06 tolerated(0.55) benign(0.009) TCGA-LN-A9FP-01 4 190883076 190883076 G C FRG1 Silent p.T243T 0.06 TCGA-LN-A9FP-01 4 2250936 2250936 C A MXD4 3'UTR 0.15 TCGA-LN-A9FP-01 4 248385 248385 C A ZNF876P RNA 0.10 TCGA-LN-A9FP-01 4 26585671 26585671 G A TBC1D19 5'UTR 0.13 TCGA-LN-A9FP-01 4 47562981 47562981 G T ATP10D Nonsense_Mutation p.E853* 0.08 TCGA-LN-A9FP-01 4 48622744 48622744 G A FRYL Missense_Mutation p.R76C 0.08 deleterious(0) probably_damaging(0.991) TCGA-LN-A9FP-01 4 5448434 5448434 C G STK32B Silent p.G199G 0.12 TCGA-LN-A9FP-01 4 55604640 55604640 G T KIT Missense_Mutation p.V950L 0.09 tolerated(0.81) benign(0.09) TCGA-LN-A9FP-01 4 71347113 71347113 C A MUC7 Missense_Mutation p.P218T 0.15 tolerated(0.56) unknown(0) TCGA-LN-A9FP-01 4 71508513 71508513 C T ENAM Missense_Mutation p.P457L 0.16 tolerated(0.11) benign(0.149) TCGA-LN-A9FP-01 4 77816952 77816952 C A SOWAHB Missense_Mutation p.G684V 0.11 tolerated(0.11) probably_damaging(0.988) TCGA-LN-A9FP-01 4 8583004 8583004 G T GPR78 Missense_Mutation p.A99S 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-LN-A9FP-01 4 96123921 96123921 G C UNC5C Missense_Mutation p.I699M 0.07 tolerated(0.07) possibly_damaging(0.459) TCGA-LN-A9FP-01 5 112769133 112769133 C T TSSK1B 3'UTR 0.09 TCGA-LN-A9FP-01 5 136957111 136957111 G A KLHL3 3'UTR 0.16 TCGA-LN-A9FP-01 5 140167367 140167367 C A PCDHA1 Silent p.R498R 0.05 TCGA-LN-A9FP-01 5 140201574 140201574 G T PCDHA5 Missense_Mutation p.D72Y 0.05 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-LN-A9FP-01 5 140229361 140229361 G T PCDHA9 Silent p.A427A 0.05 TCGA-LN-A9FP-01 5 140255196 140255196 C T PCDHA12 Missense_Mutation p.R47C 0.04 deleterious_low_confidence(0.01) possibly_damaging(0.883) TCGA-LN-A9FP-01 5 140537208 140537208 C G PCDHB17 Missense_Mutation p.S544R 0.05 deleterious_low_confidence(0) possibly_damaging(0.493) TCGA-LN-A9FP-01 5 140603152 140603152 G T PCDHB14 Silent p.R25R 0.07 TCGA-LN-A9FP-01 5 140615746 140615746 G A PCDHB18 RNA 0.04 TCGA-LN-A9FP-01 5 140794996 140794996 G T PCDHGA10 Missense_Mutation p.A752S 0.05 deleterious_low_confidence(0) benign(0.419) TCGA-LN-A9FP-01 5 141331136 141331136 G T PCDH12 Missense_Mutation p.S967Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FP-01 5 145543902 145543902 T C LARS Missense_Mutation p.I189V 0.05 tolerated(1) benign(0.002) TCGA-LN-A9FP-01 5 145613110 145613110 C G RBM27 Missense_Mutation p.F316L 0.08 deleterious(0.02) benign(0.18) TCGA-LN-A9FP-01 5 146773361 146773361 C A DPYSL3 3'UTR 0.11 TCGA-LN-A9FP-01 5 147040585 147040585 G T JAKMIP2 Silent p.R185R 0.07 TCGA-LN-A9FP-01 5 149578905 149578905 C A SLC6A7 Silent p.L233L 0.05 TCGA-LN-A9FP-01 5 31983407 31983407 G A PDZD2 Missense_Mutation p.R208Q 0.06 tolerated(0.46) benign(0.003) TCGA-LN-A9FP-01 5 39202128 39202128 C A FYB Missense_Mutation p.R322M 0.08 deleterious(0.03) benign(0.1) TCGA-LN-A9FP-01 5 56777851 56777851 C A ACTBL2 Missense_Mutation p.M228I 0.07 tolerated_low_confidence(0.07) benign(0.039) TCGA-LN-A9FP-01 5 72849262 72849262 C A ANKRA2 Missense_Mutation p.M285I 0.12 deleterious(0.04) possibly_damaging(0.898) TCGA-LN-A9FP-01 5 85583508 85583508 G C NBPF22P RNA 0.06 TCGA-LN-A9FP-01 6 13228205 13228205 G T PHACTR1 Nonsense_Mutation p.E382* 0.11 TCGA-LN-A9FP-01 6 139564250 139564250 C T TXLNB Missense_Mutation p.A490T 0.10 tolerated(0.3) benign(0.025) TCGA-LN-A9FP-01 6 146269407 146269407 C T SHPRH Splice_Site p.X354_splice 0.06 TCGA-LN-A9FP-01 6 149771832 149771832 A T ZC3H12D Missense_Mutation p.L524Q 0.10 deleterious_low_confidence(0.01) benign(0.445) TCGA-LN-A9FP-01 6 160206497 160206497 T A TCP1 Missense_Mutation p.I137F 0.11 deleterious(0.01) benign(0.135) TCGA-LN-A9FP-01 6 160212043 160212043 G A MRPL18 Missense_Mutation p.E42K 0.09 deleterious(0.05) benign(0.013) TCGA-LN-A9FP-01 6 160664752 160664752 G T SLC22A2 Nonsense_Mutation p.Y377* 0.19 TCGA-LN-A9FP-01 6 161139416 161139416 G A PLG Missense_Mutation p.G293E 0.09 deleterious(0.01) probably_damaging(0.995) TCGA-LN-A9FP-01 6 163483273 163483273 G T PACRG Missense_Mutation p.R128L 0.05 tolerated(0.29) possibly_damaging(0.597) TCGA-LN-A9FP-01 6 24666976 24666976 C T TDP2 Missense_Mutation p.D39N 0.13 deleterious(0.01) benign(0.243) TCGA-LN-A9FP-01 6 29641135 29641135 G C ZFP57 Silent p.R251R 0.17 TCGA-LN-A9FP-01 6 30615067 30615067 A T C6orf136 Missense_Mutation p.Q20L 0.09 deleterious_low_confidence(0) benign(0.012) TCGA-LN-A9FP-01 6 31827130 31827130 C A NEU1 3'UTR 0.11 TCGA-LN-A9FP-01 6 32917464 32917464 G A HLA-DMA Silent p.F192F 0.09 TCGA-LN-A9FP-01 6 33283128 33283128 G A ZBTB22 Silent p.F522F 0.16 TCGA-LN-A9FP-01 6 33424232 33424232 G T ZBTB9 Missense_Mutation p.C452F 0.06 tolerated(1) benign(0.006) TCGA-LN-A9FP-01 6 36709970 36709970 G A CPNE5 3'UTR 0.18 TCGA-LN-A9FP-01 6 49754035 49754035 C T PGK2 Missense_Mutation p.G289E 0.09 deleterious(0) possibly_damaging(0.732) TCGA-LN-A9FP-01 6 53140028 53140028 G C ELOVL5 Missense_Mutation p.S146C 0.09 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 6 62390931 62390931 C A KHDRBS2 Missense_Mutation p.L329F 0.05 tolerated(0.25) benign(0.362) TCGA-LN-A9FP-01 6 66205078 66205078 G T EYS Missense_Mutation p.Q76K 0.11 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-LN-A9FP-01 6 70447905 70447905 C A LMBRD1 Missense_Mutation p.G189C 0.06 deleterious(0.01) probably_damaging(0.959) TCGA-LN-A9FP-01 6 70918602 70918602 G A COL19A1 3'UTR 0.06 TCGA-LN-A9FP-01 6 7373495 7373496 - A CAGE1 Frame_Shift_Ins p.L519Ffs*6 0.12 TCGA-LN-A9FP-01 6 75843646 75843646 C T COL12A1 Nonsense_Mutation p.W1864* 0.07 TCGA-LN-A9FP-01 7 100358086 100358086 G T ZAN Missense_Mutation p.V1257L 0.06 unknown(0) TCGA-LN-A9FP-01 7 100648403 100648403 C G MUC12 Missense_Mutation p.F4853L 0.06 benign(0.302) TCGA-LN-A9FP-01 7 100648615 100648615 C T MUC12 Missense_Mutation p.S4924F 0.11 unknown(0) TCGA-LN-A9FP-01 7 103292142 103292142 G T RELN Missense_Mutation p.H620N 0.12 tolerated(0.11) probably_damaging(0.985) TCGA-LN-A9FP-01 7 107688467 107688467 C G LAMB4 Missense_Mutation p.R1404S 0.06 deleterious(0.02) benign(0) TCGA-LN-A9FP-01 7 117235030 117235030 G T CFTR Missense_Mutation p.W846L 0.11 tolerated(0.05) benign(0.099) TCGA-LN-A9FP-01 7 120907296 120907296 C A CPED1 Silent p.I887I 0.06 TCGA-LN-A9FP-01 7 12263907 12263907 G T TMEM106B Missense_Mutation p.V113L 0.05 deleterious(0.02) probably_damaging(0.994) TCGA-LN-A9FP-01 7 129046266 129046266 G T AHCYL2 Silent p.V418V 0.04 TCGA-LN-A9FP-01 7 132169579 132169579 G T PLXNA4 Intron 0.08 TCGA-LN-A9FP-01 7 138255646 138255646 G C TRIM24 Silent p.T592T 0.08 TCGA-LN-A9FP-01 7 141720844 141720844 C A MGAM Silent p.L173L 0.07 TCGA-LN-A9FP-01 7 141833840 141833840 G T RP11-1220K2.2 Missense_Mutation p.R212L 0.09 tolerated(0.1) benign(0.044) TCGA-LN-A9FP-01 7 142176768 142176768 C G TRBV7-4 Missense_Mutation p.W8S 0.09 deleterious(0.05) benign(0.337) TCGA-LN-A9FP-01 7 14880833 14880833 T A DGKB Missense_Mutation p.Q19L 0.12 deleterious(0.04) benign(0.048) TCGA-LN-A9FP-01 7 149425722 149425722 G C KRBA1 Missense_Mutation p.G528A 0.09 tolerated(0.15) probably_damaging(0.992) TCGA-LN-A9FP-01 7 149500089 149500089 G C SSPO RNA 0.13 TCGA-LN-A9FP-01 7 149500813 149500813 G T SSPO RNA 0.07 TCGA-LN-A9FP-01 7 149511966 149511966 G T SSPO RNA 0.10 TCGA-LN-A9FP-01 7 150490363 150490363 G C TMEM176B Missense_Mutation p.T138R 0.09 deleterious(0) probably_damaging(0.979) TCGA-LN-A9FP-01 7 151878492 151878492 T A KMT2C Silent p.T2151T 0.09 TCGA-LN-A9FP-01 7 154862603 154862603 C A HTR5A 5'UTR 0.08 TCGA-LN-A9FP-01 7 2515604 2515604 G T GRIFIN RNA 0.09 TCGA-LN-A9FP-01 7 2687177 2687177 G C TTYH3 Silent p.T177T 0.11 TCGA-LN-A9FP-01 7 44228666 44228666 C A GCK 5'UTR 0.10 TCGA-LN-A9FP-01 7 44228667 44228667 T A GCK 5'UTR 0.10 TCGA-LN-A9FP-01 7 44882898 44882898 C A H2AFV Missense_Mutation p.R20L 0.08 deleterious(0.05) benign(0.14) TCGA-LN-A9FP-01 7 46728896 46728896 G T AC011294.3 3'UTR 0.09 TCGA-LN-A9FP-01 7 6045569 6045569 T C PMS2 Silent p.V39V 0.08 TCGA-LN-A9FP-01 7 64291962 64291962 G C ZNF138 Silent p.V88V 0.08 TCGA-LN-A9FP-01 7 64438934 64438934 C A ZNF117 Missense_Mutation p.G339C 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A9FP-01 7 6505755 6505755 C G KDELR2 Missense_Mutation p.G184A 0.06 deleterious(0) probably_damaging(0.97) TCGA-LN-A9FP-01 7 716865 716865 C A PRKAR1B Splice_Site p.X147_splice 0.10 TCGA-LN-A9FP-01 7 73474214 73474214 A T ELN Splice_Site p.X472_splice 0.08 TCGA-LN-A9FP-01 7 73731819 73731819 G A CLIP2 5'UTR 0.12 TCGA-LN-A9FP-01 7 73731997 73731997 G T CLIP2 Missense_Mutation p.G41C 0.08 deleterious(0) possibly_damaging(0.866) TCGA-LN-A9FP-01 7 73932624 73932624 A T GTF2IRD1 Missense_Mutation p.S225C 0.10 deleterious(0) possibly_damaging(0.87) TCGA-LN-A9FP-01 7 77764503 77764503 G T MAGI2 Missense_Mutation p.R956S 0.15 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 7 86548598 86548598 C A KIAA1324L Missense_Mutation p.Q476H 0.10 tolerated(0.17) benign(0.003) TCGA-LN-A9FP-01 7 92733886 92733886 C A SAMD9 Missense_Mutation p.D509Y 0.07 deleterious(0) possibly_damaging(0.873) TCGA-LN-A9FP-01 7 98608682 98608682 G A TRRAP Missense_Mutation p.R3635H 0.24 probably_damaging(0.993) TCGA-LN-A9FP-01 7 99811735 99811735 C A STAG3 3'UTR 0.12 TCGA-LN-A9FP-01 8 105264188 105264188 G C RIMS2 3'Flank 0.10 TCGA-LN-A9FP-01 8 114326869 114326869 G C CSMD3 Missense_Mutation p.A111G 0.15 tolerated(0.05) benign(0.3) TCGA-LN-A9FP-01 8 13072192 13072192 A T DLC1 Intron 0.12 TCGA-LN-A9FP-01 8 134034380 134034380 G C TG Missense_Mutation p.G2341R 0.13 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 8 139815144 139815144 G C COL22A1 Missense_Mutation p.P510A 0.14 unknown(0) TCGA-LN-A9FP-01 8 143618431 143618431 C T BAI1 Silent p.H1218H 0.05 TCGA-LN-A9FP-01 8 144650733 144650733 C T MROH6 Missense_Mutation p.D545N 0.12 deleterious(0.03) possibly_damaging(0.701) TCGA-LN-A9FP-01 8 145066491 145066491 G T GRINA Missense_Mutation p.V258L 0.17 tolerated(0.55) benign(0.371) TCGA-LN-A9FP-01 8 1952500 1952500 G C KBTBD11 3'UTR 0.10 TCGA-LN-A9FP-01 8 26371930 26371930 C A PNMA2 5'Flank 0.10 TCGA-LN-A9FP-01 8 40389096 40389096 G C ZMAT4 3'UTR 0.11 TCGA-LN-A9FP-01 8 49985382 49985382 G A C8orf22 5'UTR 0.23 TCGA-LN-A9FP-01 8 52321611 52321611 G T PXDNL Missense_Mutation p.P858H 0.16 deleterious(0.03) benign(0.005) TCGA-LN-A9FP-01 8 665954 665954 C G ERICH1 Missense_Mutation p.G26R 0.11 deleterious(0.01) benign(0.413) TCGA-LN-A9FP-01 8 89052248 89052248 C G MMP16 3'UTR 0.14 TCGA-LN-A9FP-01 8 92972711 92972711 G A RUNX1T1 Missense_Mutation p.T536I 0.21 deleterious(0) probably_damaging(0.939) TCGA-LN-A9FP-01 8 95412652 95412652 C T RAD54B Missense_Mutation p.M328I 0.09 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 9 104187755 104187755 G T ALDOB Missense_Mutation p.T260N 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-LN-A9FP-01 9 107581886 107581886 C A ABCA1 Silent p.L1074L 0.15 TCGA-LN-A9FP-01 9 113308490 113308490 C T SVEP1 Missense_Mutation p.R290Q 0.21 benign(0.004) TCGA-LN-A9FP-01 9 114089878 114089878 A T OR2K2 Missense_Mutation p.V279E 0.12 deleterious(0) possibly_damaging(0.735) TCGA-LN-A9FP-01 9 136339163 136339163 G T SLC2A6 Silent p.S325S 0.12 TCGA-LN-A9FP-01 9 139975304 139975304 G T UAP1L1 Missense_Mutation p.A448S 0.12 tolerated(0.79) benign(0.014) TCGA-LN-A9FP-01 9 32784186 32784186 G T TMEM215 Missense_Mutation p.R2L 0.08 deleterious(0) probably_damaging(0.994) TCGA-LN-A9FP-01 9 6793022 6793022 C T KDM4C Missense_Mutation p.P12S 0.06 tolerated(0.06) benign(0.025) TCGA-LN-A9FP-01 9 73477993 73477993 C A TRPM3 Missense_Mutation p.G98V 0.21 deleterious(0.05) probably_damaging(0.999) TCGA-LN-A9FP-01 9 84609130 84609130 A T SPATA31D1 Missense_Mutation p.M1249L 0.05 tolerated(0.13) benign(0.013) TCGA-LN-A9FP-01 9 84610013 84610013 C A SPATA31D1 Missense_Mutation p.P1543Q 0.11 deleterious(0.05) possibly_damaging(0.742) TCGA-LN-A9FP-01 9 85958132 85958132 C A FRMD3 Missense_Mutation p.A149S 0.07 deleterious(0) possibly_damaging(0.67) TCGA-LN-A9FP-01 9 90343008 90343008 G C CTSL Missense_Mutation p.E65Q 0.12 deleterious(0.03) possibly_damaging(0.721) TCGA-LN-A9FP-01 9 90582309 90582309 C A CDK20 3'UTR 0.20 TCGA-LN-A9FP-01 9 94486219 94486219 G T ROR2 Missense_Mutation p.P853T 0.16 deleterious_low_confidence(0.02) benign(0.031) TCGA-LN-A9FP-01 9 95076562 95076562 G C NOL8 Missense_Mutation p.A782G 0.08 deleterious(0) probably_damaging(1) TCGA-LN-A9FP-01 X 107334759 107334759 C - PSMD10 5'UTR 0.09 TCGA-LN-A9FP-01 X 112059028 112059028 C A AMOT Missense_Mutation p.G317V 0.09 unknown(0) TCGA-LN-A9FP-01 X 125298851 125298851 C A DCAF12L2 Missense_Mutation p.V353L 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-LN-A9FP-01 X 129190222 129190222 C A BCORL1 3'UTR 0.09 TCGA-LN-A9FP-01 X 129545421 129545421 G T RBMX2 Missense_Mutation p.G135C 0.07 deleterious(0.01) possibly_damaging(0.652) TCGA-LN-A9FP-01 X 129759235 129759235 G A ENOX2 3'UTR 0.07 TCGA-LN-A9FP-01 X 134994988 134994988 G C SAGE1 Missense_Mutation p.E883Q 0.05 deleterious(0.04) possibly_damaging(0.596) TCGA-LN-A9FP-01 X 13779231 13779231 C A OFD1 Missense_Mutation p.P763H 0.04 deleterious(0.04) probably_damaging(0.957) TCGA-LN-A9FP-01 X 142718475 142718475 G T SLITRK4 Silent p.A150A 0.12 TCGA-LN-A9FP-01 X 153626899 153626899 G T RPL10 Intron 0.11 TCGA-LN-A9FP-01 X 27998866 27998866 C A DCAF8L1 Missense_Mutation p.A196S 0.05 tolerated(0.76) benign(0.012) TCGA-LN-A9FP-01 X 30877771 30877771 G A TAB3 5'UTR 0.07 TCGA-LN-A9FP-01 X 32481653 32481653 C A DMD Missense_Mutation p.G1112V 0.05 benign(0.254) TCGA-LN-A9FP-01 X 34148740 34148740 C T FAM47A Silent p.R552R 0.05 TCGA-LN-A9FP-01 X 49161383 49161383 C G GAGE10 Silent p.L15L 0.09 TCGA-LN-A9FP-01 X 54467182 54467182 G T TSR2 Silent p.G47G 0.06 TCGA-LN-A9FP-01 X 69421794 69421794 C A DGAT2L6 Nonsense_Mutation p.S176* 0.10 TCGA-LN-A9FP-01 X 70316309 70316309 G T FOXO4 5'UTR 0.09 TCGA-LN-A9FP-01 X 85994826 85994826 A T DACH2 Missense_Mutation p.H394L 0.10 tolerated(0.12) possibly_damaging(0.621) TCGA-LN-A9FP-01 X 86071037 86071037 A G DACH2 Missense_Mutation p.D562G 0.06 deleterious(0.04) benign(0.317) TCGA-LN-A9FP-01 X 91137981 91137981 T - PCDH11X Intron 0.10 TCGA-LN-A9FP-01 X 9673102 9673102 A T TBL1X Missense_Mutation p.H395L 0.05 deleterious(0.01) possibly_damaging(0.507) TCGA-LN-A9FQ-01 10 104228949 104228949 G A TMEM180 Missense_Mutation p.G55R 0.43 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FQ-01 10 120795774 120795774 G T EIF3A Missense_Mutation p.S1309Y 0.17 deleterious_low_confidence(0) unknown(0) TCGA-LN-A9FQ-01 10 95399868 95399868 A T PDE6C Missense_Mutation p.E508D 0.34 tolerated(0.15) benign(0.211) TCGA-LN-A9FQ-01 10 98281655 98281655 C T TM9SF3 3'UTR 0.34 TCGA-LN-A9FQ-01 11 124739843 124739843 G C ROBO3 Splice_Site p.X216_splice 0.27 TCGA-LN-A9FQ-01 11 134201987 134201987 C T GLB1L2 Missense_Mutation p.A11V 0.52 tolerated(0.34) benign(0.001) TCGA-LN-A9FQ-01 11 216056 216056 G A SIRT3 3'UTR 0.78 TCGA-LN-A9FQ-01 11 31349672 31349672 A G DCDC1 Silent p.D52D 0.21 TCGA-LN-A9FQ-01 11 5411427 5411427 A T OR51M1 Missense_Mutation p.M267L 0.12 tolerated(0.32) benign(0.101) TCGA-LN-A9FQ-01 11 56237898 56237898 A G OR5M3 Missense_Mutation p.F26L 0.20 deleterious(0.01) benign(0.144) TCGA-LN-A9FQ-01 11 60229937 60229937 C T MS4A1 Silent p.L30L 0.13 TCGA-LN-A9FQ-01 11 65111529 65111529 A G DPF2 Missense_Mutation p.Y209C 0.38 deleterious(0) possibly_damaging(0.815) TCGA-LN-A9FQ-01 11 65144438 65144438 C T SLC25A45 Missense_Mutation p.C150Y 0.45 deleterious(0) probably_damaging(0.992) TCGA-LN-A9FQ-01 11 6913349 6913349 T A OR2D2 Missense_Mutation p.N128I 0.53 tolerated(0.07) benign(0.058) TCGA-LN-A9FQ-01 12 10562135 10562135 C T KLRC4 Missense_Mutation p.A14T 0.43 tolerated(0.08) possibly_damaging(0.721) TCGA-LN-A9FQ-01 12 107208704 107208704 G C RIC8B Silent p.L121L 0.17 TCGA-LN-A9FQ-01 12 133209313 133209313 C T POLE Missense_Mutation p.V2025M 0.35 deleterious(0.04) benign(0.026) TCGA-LN-A9FQ-01 12 50616162 50616162 C T LIMA1 Missense_Mutation p.R91Q 0.72 tolerated(0.26) benign(0.003) TCGA-LN-A9FQ-01 12 53069050 53069050 C T KRT1 Missense_Mutation p.G621E 0.61 deleterious_low_confidence(0) unknown(0) TCGA-LN-A9FQ-01 12 85518212 85518212 C T LRRIQ1 Missense_Mutation p.P1308S 0.21 tolerated(0.57) benign(0.018) TCGA-LN-A9FQ-01 13 23985390 23985390 C T SACS 5'UTR 0.22 TCGA-LN-A9FQ-01 13 41132513 41132546 TAGAAAAGACCTGTACAAAGCTGGCATTTAATCT ATAGAAAAGACCTGTACAAAGCTGGCATTTAATC FOXO1 3'UTR 0.11 TCGA-LN-A9FQ-01 14 105223046 105223046 G A SIVA1 Missense_Mutation p.R140H 0.22 tolerated(0.08) benign(0.016) TCGA-LN-A9FQ-01 14 24724341 24724341 C T TGM1 Silent p.A588A 0.57 TCGA-LN-A9FQ-01 14 34270029 34270029 C A NPAS3 Missense_Mutation p.A839D 0.11 deleterious_low_confidence(0) probably_damaging(0.969) TCGA-LN-A9FQ-01 14 56755351 56755351 G C PELI2 Missense_Mutation p.G169A 0.26 deleterious(0) probably_damaging(0.957) TCGA-LN-A9FQ-01 14 61997175 61997175 C T RP11-47I22.4 Silent p.G46G 0.50 TCGA-LN-A9FQ-01 14 67800277 67800278 - A MPP5 3'UTR 0.33 TCGA-LN-A9FQ-01 14 74376101 74376101 C A ZNF410 Missense_Mutation p.S341Y 0.43 deleterious(0) possibly_damaging(0.451) TCGA-LN-A9FQ-01 14 75266005 75266005 G A YLPM1 Silent p.P1335P 0.40 TCGA-LN-A9FQ-01 15 26790767 26790767 C G GABRB3 3'UTR 0.58 TCGA-LN-A9FQ-01 15 55790554 55790554 C G DYX1C1 5'UTR 0.22 TCGA-LN-A9FQ-01 15 76630258 76630258 C T ISL2 Silent p.C66C 0.31 TCGA-LN-A9FQ-01 15 78758632 78758632 A T IREB2 Missense_Mutation p.N144Y 0.21 deleterious(0.01) probably_damaging(0.942) TCGA-LN-A9FQ-01 15 79587763 79587763 C A ANKRD34C 3'UTR 0.29 TCGA-LN-A9FQ-01 16 12293473 12293473 C T SNX29 Silent p.L537L 0.30 TCGA-LN-A9FQ-01 16 1877560 1877560 C T FAHD1 Silent p.D110D 0.22 TCGA-LN-A9FQ-01 16 28838251 28838251 C G ATXN2L Missense_Mutation p.Q229E 0.43 tolerated(0.69) possibly_damaging(0.679) TCGA-LN-A9FQ-01 16 30429185 30429185 C T ZNF771 Missense_Mutation p.H151Y 0.29 deleterious(0) benign(0.217) TCGA-LN-A9FQ-01 17 16456271 16456271 C T ZNF287 Silent p.S395S 0.26 TCGA-LN-A9FQ-01 17 1840984 1840984 G A RTN4RL1 Silent p.N44N 0.08 TCGA-LN-A9FQ-01 17 2930267 2930267 C T RAP1GAP2 Silent p.F670F 0.44 TCGA-LN-A9FQ-01 17 47005701 47005702 - A UBE2Z 3'UTR 0.53 TCGA-LN-A9FQ-01 17 48249043 48249043 C A SGCA Intron 0.21 TCGA-LN-A9FQ-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.59 TCGA-LN-A9FQ-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.18 deleterious(0) probably_damaging(1) TCGA-LN-A9FQ-01 18 12310963 12310963 C T TUBB6 Missense_Mutation p.A63V 0.66 deleterious_low_confidence(0) benign(0.204) TCGA-LN-A9FQ-01 18 56149266 56149266 T C ALPK2 Missense_Mutation p.K2101R 0.20 deleterious(0.03) possibly_damaging(0.887) TCGA-LN-A9FQ-01 18 61151655 61151655 G T SERPINB5 Intron 0.20 TCGA-LN-A9FQ-01 18 66382259 66382259 G A TMX3 5'UTR 0.56 TCGA-LN-A9FQ-01 19 13136057 13136057 C T NFIX Missense_Mutation p.R84W 0.21 deleterious(0) probably_damaging(1) TCGA-LN-A9FQ-01 19 13942570 13942570 T A ZSWIM4 3'UTR 0.55 TCGA-LN-A9FQ-01 19 19416842 19416842 G A SUGP1 Silent p.T118T 0.46 TCGA-LN-A9FQ-01 19 21300897 21300897 G T ZNF714 Missense_Mutation p.G476V 0.49 deleterious(0.03) benign(0.035) TCGA-LN-A9FQ-01 19 33355188 33355188 G T SLC7A9 Missense_Mutation p.P98T 0.19 tolerated(0.69) benign(0.41) TCGA-LN-A9FQ-01 19 37487497 37487497 C T ZNF568 Nonsense_Mutation p.Q238* 0.42 TCGA-LN-A9FQ-01 19 41008395 41008395 G A SPTBN4 Missense_Mutation p.G395D 0.27 deleterious(0.02) possibly_damaging(0.677) TCGA-LN-A9FQ-01 19 44660752 44660752 C G ZNF234 Missense_Mutation p.Q195E 0.42 tolerated(0.06) benign(0.28) TCGA-LN-A9FQ-01 19 45992807 45992807 C T RTN2 Silent p.A346A 0.11 TCGA-LN-A9FQ-01 19 48244236 48244236 C T EHD2 Silent p.L393L 0.27 TCGA-LN-A9FQ-01 19 49208141 49208141 G A FUT2 3'UTR 0.26 TCGA-LN-A9FQ-01 19 49316483 49316483 C A HSD17B14 Silent p.G254G 0.60 TCGA-LN-A9FQ-01 19 50086879 50086879 G C PRRG2 Missense_Mutation p.E56Q 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A9FQ-01 1 101198095 101198095 G T VCAM1 Missense_Mutation p.Q549H 0.14 deleterious(0.03) benign(0.049) TCGA-LN-A9FQ-01 1 103343330 103343330 G A COL11A1 3'UTR 0.48 TCGA-LN-A9FQ-01 1 12056272 12056272 C G MFN2 Missense_Mutation p.S124C 0.61 deleterious(0) probably_damaging(0.999) TCGA-LN-A9FQ-01 1 150082617 150082617 G A VPS45 Silent p.Q500Q 0.27 TCGA-LN-A9FQ-01 1 152081784 152081784 C A TCHH Missense_Mutation p.E1303D 0.08 unknown(0) TCGA-LN-A9FQ-01 1 153233880 153233880 C T LOR Missense_Mutation p.S152L 0.27 unknown(0) TCGA-LN-A9FQ-01 1 155295178 155295178 C G RUSC1 Silent p.L535L 0.29 TCGA-LN-A9FQ-01 1 155734853 155734853 C T GON4L Missense_Mutation p.D1471N 0.30 deleterious(0.02) benign(0.004) TCGA-LN-A9FQ-01 1 167096345 167096345 G T DUSP27 Silent p.L659L 0.36 TCGA-LN-A9FQ-01 1 201027607 201027607 C T CACNA1S Missense_Mutation p.D1180N 0.28 deleterious(0) probably_damaging(0.997) TCGA-LN-A9FQ-01 1 201750186 201750186 G C NAV1 Missense_Mutation p.S471T 0.10 tolerated(0.32) benign(0.414) TCGA-LN-A9FQ-01 1 209790831 209790831 C T LAMB3 Missense_Mutation p.R1051Q 0.24 tolerated(0.65) benign(0.002) TCGA-LN-A9FQ-01 1 235292048 235292048 G A TOMM20 5'UTR 0.56 TCGA-LN-A9FQ-01 1 52940528 52940528 A C ZCCHC11 Missense_Mutation p.D901E 0.79 deleterious(0.01) benign(0.129) TCGA-LN-A9FQ-01 20 3782721 3782721 G A CDC25B Missense_Mutation p.E358K 0.47 tolerated(0.15) benign(0.392) TCGA-LN-A9FQ-01 20 61513659 61513659 G A DIDO1 Nonsense_Mutation p.R1217* 0.40 TCGA-LN-A9FQ-01 21 34926719 34926719 A G SON Missense_Mutation p.I1728V 0.63 benign(0.031) TCGA-LN-A9FQ-01 21 45402309 45402309 G A AGPAT3 3'UTR 0.06 TCGA-LN-A9FQ-01 22 36537873 36537873 C G APOL3 Missense_Mutation p.G195A 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-LN-A9FQ-01 2 118866114 118866114 T G INSIG2 3'UTR 0.13 TCGA-LN-A9FQ-01 2 15644299 15644299 G A NBAS Silent p.V308V 0.14 TCGA-LN-A9FQ-01 2 178098953 178098953 C T NFE2L2 Missense_Mutation p.G31E 0.30 deleterious(0) probably_damaging(0.962) TCGA-LN-A9FQ-01 2 39553377 39553377 T C MAP4K3 Missense_Mutation p.Y191C 0.21 deleterious(0) probably_damaging(1) TCGA-LN-A9FQ-01 2 61705938 61705938 C A XPO1 3'UTR 0.25 TCGA-LN-A9FQ-01 2 61725817 61725817 C G XPO1 Missense_Mutation p.L250F 0.39 deleterious(0) probably_damaging(0.996) TCGA-LN-A9FQ-01 2 71795469 71795469 G A DYSF Splice_Site p.X955_splice 0.38 TCGA-LN-A9FQ-01 2 73868257 73868257 C T NAT8 Missense_Mutation p.D167N 0.08 tolerated(0.06) benign(0.052) TCGA-LN-A9FQ-01 2 74595885 74595885 C T DCTN1 Silent p.V608V 0.12 TCGA-LN-A9FQ-01 3 118619908 118619908 G C IGSF11 3'UTR 0.30 TCGA-LN-A9FQ-01 3 120320222 120320222 C T NDUFB4 Intron 0.34 TCGA-LN-A9FQ-01 3 121994703 121994703 G A CASR Silent p.G474G 0.12 TCGA-LN-A9FQ-01 3 125648300 125648300 G C ALG1L Silent p.L153L 0.23 TCGA-LN-A9FQ-01 3 15045465 15045465 C G NR2C2 Missense_Mutation p.S15C 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.784) TCGA-LN-A9FQ-01 3 152058400 152058400 C T TMEM14E Silent p.L98L 0.35 TCGA-LN-A9FQ-01 3 161220969 161220969 G A OTOL1 Missense_Mutation p.A225T 0.33 tolerated(0.42) unknown(0) TCGA-LN-A9FQ-01 3 195506846 195506846 G A MUC4 Missense_Mutation p.H3869Y 0.28 benign(0.158) TCGA-LN-A9FQ-01 3 47049918 47049918 G A NBEAL2 Missense_Mutation p.R2622H 0.52 deleterious(0.04) benign(0.072) TCGA-LN-A9FQ-01 4 102984253 102984253 G C BANK1 Missense_Mutation p.D724H 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-LN-A9FQ-01 4 106190855 106190855 G A TET2 Missense_Mutation p.C1378Y 0.71 deleterious(0) probably_damaging(0.998) TCGA-LN-A9FQ-01 4 129864293 129864293 T A SCLT1 Missense_Mutation p.N497I 0.60 deleterious(0.02) benign(0.413) TCGA-LN-A9FQ-01 4 2934143 2934143 A G MFSD10 Missense_Mutation p.F210L 0.30 tolerated(0.73) benign(0.023) TCGA-LN-A9FQ-01 4 40895373 40895373 G A APBB2 Missense_Mutation p.P437L 0.22 deleterious(0.02) probably_damaging(1) TCGA-LN-A9FQ-01 4 47427817 47427817 C T GABRB1 Nonsense_Mutation p.Q403* 0.10 TCGA-LN-A9FQ-01 4 48490487 48490487 T C SLC10A4 Missense_Mutation p.I282T 0.29 tolerated(0.06) benign(0.336) TCGA-LN-A9FQ-01 4 56734599 56734599 C T EXOC1 Silent p.I171I 0.44 TCGA-LN-A9FQ-01 4 86916404 86916404 G A ARHGAP24 Missense_Mutation p.D533N 0.12 deleterious(0) probably_damaging(0.99) TCGA-LN-A9FQ-01 5 129072769 129072769 C G ADAMTS19 Missense_Mutation p.T1161S 0.60 deleterious(0.03) possibly_damaging(0.474) TCGA-LN-A9FQ-01 5 159519671 159519671 C T PWWP2A Silent p.K662K 0.08 TCGA-LN-A9FQ-01 5 176518014 176518014 G A FGFR4 Missense_Mutation p.R171H 0.10 deleterious(0.01) probably_damaging(1) TCGA-LN-A9FQ-01 5 32108982 32108982 G A PDZD2 3'UTR 0.42 TCGA-LN-A9FQ-01 5 90001342 90001342 C G GPR98 Missense_Mutation p.Q2838E 0.43 possibly_damaging(0.848) TCGA-LN-A9FQ-01 6 130462127 130462127 G A L3MBTL3 3'UTR 0.29 TCGA-LN-A9FQ-01 6 160978445 160978445 C A LPA Missense_Mutation p.S1597I 0.19 deleterious(0.01) probably_damaging(0.964) TCGA-LN-A9FQ-01 6 26216766 26216766 C T HIST1H2BG Missense_Mutation p.E36K 0.17 deleterious_low_confidence(0.01) benign(0.145) TCGA-LN-A9FQ-01 6 26546306 26546306 C G HMGN4 3'UTR 0.21 TCGA-LN-A9FQ-01 6 51523791 51523791 C T PKHD1 Silent p.G3711G 0.20 TCGA-LN-A9FQ-01 6 76407199 76407199 G C SENP6 Missense_Mutation p.E752Q 0.15 tolerated(0.91) probably_damaging(0.955) TCGA-LN-A9FQ-01 6 96656872 96656872 C T FUT9 3'UTR 0.21 TCGA-LN-A9FQ-01 6 99997423 99997423 C G CCNC Missense_Mutation p.D187H 0.20 deleterious(0) probably_damaging(1) TCGA-LN-A9FQ-01 7 122342776 122342776 G A RNF148 Missense_Mutation p.T10M 0.45 tolerated(0.06) benign(0.151) TCGA-LN-A9FQ-01 7 135047165 135047165 T C CNOT4 3'UTR 0.26 TCGA-LN-A9FQ-01 7 143141198 143141198 C T TAS2R60 Missense_Mutation p.T218I 0.09 tolerated(0.48) benign(0.038) TCGA-LN-A9FQ-01 7 155569733 155569733 G C RBM33 3'UTR 0.50 TCGA-LN-A9FQ-01 7 15725593 15725593 C T MEOX2 Silent p.A145A 0.39 TCGA-LN-A9FQ-01 7 35242238 35242238 A G TBX20 Missense_Mutation p.I383T 0.34 deleterious_low_confidence(0.03) benign(0.016) TCGA-LN-A9FQ-01 7 36406352 36406352 C T KIAA0895 Intron 0.17 TCGA-LN-A9FQ-01 7 4947197 4947197 C T MMD2 Missense_Mutation p.G215R 0.36 deleterious(0.01) probably_damaging(0.99) TCGA-LN-A9FQ-01 7 50467846 50467846 T A IKZF1 Missense_Mutation p.S319T 0.44 tolerated(0.53) benign(0.002) TCGA-LN-A9FQ-01 7 82544283 82544283 G C PCLO Missense_Mutation p.T4340S 0.34 unknown(0) TCGA-LN-A9FQ-01 7 87913329 87913329 A C STEAP4 Missense_Mutation p.Y86D 0.33 deleterious(0) probably_damaging(0.991) TCGA-LN-A9FQ-01 8 131414169 131414169 C G ASAP1 Missense_Mutation p.R7S 0.20 deleterious_low_confidence(0) unknown(0) TCGA-LN-A9FQ-01 8 68163627 68163627 G A ARFGEF1 Silent p.A919A 0.05 TCGA-LN-A9FQ-01 8 77775618 77775618 C T ZFHX4 Missense_Mutation p.S3223L 0.35 probably_damaging(0.974) TCGA-LN-A9FQ-01 8 82192800 82192800 C T FABP5 5'UTR 0.36 TCGA-LN-A9FQ-01 8 87393820 87393820 T A WWP1 Missense_Mutation p.I99K 0.28 deleterious(0) benign(0.115) TCGA-LN-A9FQ-01 9 116791119 116791119 G A ZNF618 Intron 0.11 TCGA-LN-A9FQ-01 9 136307831 136307831 C G ADAMTS13 Missense_Mutation p.P734R 0.50 tolerated(0.27) benign(0.284) TCGA-LN-A9FQ-01 9 14719960 14719960 A T CER1 3'UTR 0.89 TCGA-LN-A9FQ-01 X 152721028 152721028 G A HAUS7 Missense_Mutation p.T311M 0.75 deleterious(0) benign(0.347) TCGA-LN-A9FQ-01 X 153881746 153881746 G A CTAG2 Missense_Mutation p.A15V 0.25 deleterious_low_confidence(0) unknown(0) TCGA-LN-A9FQ-01 X 31090038 31090038 C T FTHL17 Silent p.Q11Q 0.50 TCGA-LN-A9FQ-01 X 56591895 56591895 C G UBQLN2 Missense_Mutation p.S530C 0.63 deleterious(0.02) unknown(0) TCGA-LN-A9FQ-01 X 64709053 64709053 G A ZC3H12B Silent p.Q124Q 0.80 TCGA-LN-A9FR-01 10 134690433 134690433 T C TTC40 Silent p.E1415E 0.25 TCGA-LN-A9FR-01 10 88722801 88722801 C A SNCG 3'UTR 0.29 TCGA-LN-A9FR-01 10 95892039 95892039 G T PLCE1 Missense_Mutation p.G439C 0.29 deleterious_low_confidence(0) benign(0.013) TCGA-LN-A9FR-01 11 18195433 18195433 G A MRGPRX4 Silent p.P210P 0.06 TCGA-LN-A9FR-01 11 18621528 18621528 C T SPTY2D1-AS1 RNA 0.41 TCGA-LN-A9FR-01 11 35440593 35440593 G A SLC1A2 5'UTR 0.31 TCGA-LN-A9FR-01 11 55889986 55889986 G T OR8H3 Missense_Mutation p.M46I 0.24 deleterious(0.05) benign(0.125) TCGA-LN-A9FR-01 11 59376070 59376070 G A OSBP Missense_Mutation p.R237C 0.16 deleterious(0) possibly_damaging(0.8) TCGA-LN-A9FR-01 11 67786319 67786319 G A ALDH3B1 Silent p.P116P 0.12 TCGA-LN-A9FR-01 12 116429734 116429734 C A MED13L Missense_Mutation p.D1009Y 0.24 deleterious(0) unknown(0) TCGA-LN-A9FR-01 12 123201265 123201265 T C HCAR3 Missense_Mutation p.Q7R 0.23 deleterious_low_confidence(0.05) benign(0.001) TCGA-LN-A9FR-01 12 123498531 123498531 C A PITPNM2 Missense_Mutation p.R46L 0.18 deleterious(0.01) benign(0.351) TCGA-LN-A9FR-01 12 19408050 19408050 A G PLEKHA5 Missense_Mutation p.Y128C 0.24 deleterious(0) possibly_damaging(0.886) TCGA-LN-A9FR-01 12 306657 306657 C T SLC6A12 Missense_Mutation p.A321T 0.14 tolerated(0.39) possibly_damaging(0.899) TCGA-LN-A9FR-01 12 40917139 40917139 G T MUC19 Intron 0.24 TCGA-LN-A9FR-01 12 54974789 54974789 T C PPP1R1A Missense_Mutation p.E150G 0.20 tolerated_low_confidence(0.15) benign(0.009) TCGA-LN-A9FR-01 13 26620603 26620603 C G SHISA2 3'UTR 0.50 TCGA-LN-A9FR-01 13 74260497 74260497 A - KLF12 3'UTR 0.09 TCGA-LN-A9FR-01 13 78337586 78337586 G T SLAIN1 3'Flank 0.43 TCGA-LN-A9FR-01 13 79928659 79928659 T A RBM26 Missense_Mutation p.Q631L 0.23 tolerated(0.28) possibly_damaging(0.811) TCGA-LN-A9FR-01 14 107169989 107169989 G T IGHV1-69 Missense_Mutation p.A98D 0.24 deleterious(0.01) benign(0.235) TCGA-LN-A9FR-01 14 44976304 44976304 T A FSCB 5'UTR 0.16 TCGA-LN-A9FR-01 14 74973428 74973428 T C LTBP2 Missense_Mutation p.I1336V 0.25 tolerated(0.34) benign(0.004) TCGA-LN-A9FR-01 15 35178780 35178780 G T AQR Missense_Mutation p.P922T 0.47 tolerated(0.16) benign(0.188) TCGA-LN-A9FR-01 15 65267070 65267070 C T SPG21 Missense_Mutation p.A108T 0.38 tolerated(0.64) benign(0.352) TCGA-LN-A9FR-01 15 77472942 77472942 C T PEAK1 Missense_Mutation p.V443I 0.41 tolerated(0.94) benign(0.001) TCGA-LN-A9FR-01 16 15961272 15961272 G C FOPNL 3'UTR 0.39 TCGA-LN-A9FR-01 16 2906218 2906218 C T PRSS22 Missense_Mutation p.R49Q 0.25 deleterious(0) probably_damaging(0.996) TCGA-LN-A9FR-01 16 69732296 69732296 A G NFAT5 3'UTR 0.39 TCGA-LN-A9FR-01 16 75611681 75611681 A G GABARAPL2 3'UTR 0.48 TCGA-LN-A9FR-01 17 14063220 14063220 C T COX10 Silent p.N217N 0.31 TCGA-LN-A9FR-01 17 43216519 43216519 C T ACBD4 Silent p.P273P 0.24 TCGA-LN-A9FR-01 17 54978858 54978858 T A TRIM25 Missense_Mutation p.I337F 0.29 deleterious(0) benign(0.439) TCGA-LN-A9FR-01 17 6380423 6380423 C T PITPNM3 Silent p.P337P 0.16 TCGA-LN-A9FR-01 17 73851402 73851402 G C WBP2 5'UTR 0.27 TCGA-LN-A9FR-01 17 74928738 74928738 G A MGAT5B Missense_Mutation p.D446N 0.44 deleterious(0) probably_damaging(1) TCGA-LN-A9FR-01 17 7577084 7577084 T A TP53 Missense_Mutation p.E285V 0.17 deleterious(0) probably_damaging(0.978) TCGA-LN-A9FR-01 17 7578290 7578290 C G TP53 Splice_Site p.X187_splice 0.18 TCGA-LN-A9FR-01 17 9631606 9631606 C T USP43 Missense_Mutation p.P891S 0.14 tolerated(0.3) benign(0.003) TCGA-LN-A9FR-01 19 12541473 12541473 C A ZNF443 Nonsense_Mutation p.E505* 0.15 TCGA-LN-A9FR-01 19 13010103 13010103 T A SYCE2 3'UTR 0.14 TCGA-LN-A9FR-01 19 13255457 13255457 C A STX10 Missense_Mutation p.D203Y 0.25 deleterious(0) probably_damaging(0.981) TCGA-LN-A9FR-01 19 17759280 17759280 G T UNC13A Missense_Mutation p.H592Q 0.17 deleterious(0) probably_damaging(0.927) TCGA-LN-A9FR-01 19 18546480 18546480 T A ISYNA1 Missense_Mutation p.I383F 0.25 deleterious(0) probably_damaging(1) TCGA-LN-A9FR-01 19 24310230 24310230 C A ZNF254 Silent p.T476T 0.14 TCGA-LN-A9FR-01 19 3982335 3982335 C A EEF2 Missense_Mutation p.A234S 0.18 tolerated(0.45) benign(0.001) TCGA-LN-A9FR-01 19 42221564 42221564 C T CEACAM5 Silent p.V383V 0.15 TCGA-LN-A9FR-01 1 117061654 117061654 T C CD58 Intron 0.44 TCGA-LN-A9FR-01 1 149785084 149785084 C G HIST2H3D Missense_Mutation p.E51D 0.19 deleterious_low_confidence(0.03) benign(0.011) TCGA-LN-A9FR-01 1 152277995 152277995 C A FLG Missense_Mutation p.G3123W 0.14 unknown(0) TCGA-LN-A9FR-01 1 153362902 153362902 A G S100A8 Missense_Mutation p.L37S 0.20 deleterious(0) probably_damaging(0.991) TCGA-LN-A9FR-01 1 158262114 158262114 T C CD1C Missense_Mutation p.L190S 0.43 tolerated(0.14) benign(0.132) TCGA-LN-A9FR-01 1 245850135 245850135 G A KIF26B Missense_Mutation p.E1284K 0.26 deleterious(0) unknown(0) TCGA-LN-A9FR-01 1 247655201 247655201 C T OR2W5 RNA 0.32 TCGA-LN-A9FR-01 1 77334224 77334224 A G ST6GALNAC5 Missense_Mutation p.T20A 0.61 benign(0.16) TCGA-LN-A9FR-01 1 91406514 91406514 T C ZNF644 Missense_Mutation p.K133E 0.56 tolerated(0.23) benign(0.005) TCGA-LN-A9FR-01 20 30919073 30919073 C T KIF3B Missense_Mutation p.T732I 0.09 tolerated(0.46) possibly_damaging(0.507) TCGA-LN-A9FR-01 20 61665826 61665826 C T LINC00029 RNA 0.40 TCGA-LN-A9FR-01 21 33680842 33680842 T G MRAP Intron 0.31 TCGA-LN-A9FR-01 22 31489516 31489516 C A SMTN Intron 0.21 TCGA-LN-A9FR-01 22 37470670 37470670 C T TMPRSS6 Missense_Mutation p.G483D 0.14 deleterious(0.02) possibly_damaging(0.901) TCGA-LN-A9FR-01 22 40140045 40140045 A G ENTHD1 Missense_Mutation p.L488P 0.17 tolerated(0.06) benign(0.016) TCGA-LN-A9FR-01 2 116548723 116548723 C T DPP10 Missense_Mutation p.P537L 0.12 tolerated(0.12) benign(0.002) TCGA-LN-A9FR-01 2 201437233 201437233 A T SGOL2 Missense_Mutation p.I722L 0.21 deleterious(0.04) benign(0.105) TCGA-LN-A9FR-01 2 219890846 219890846 G A CCDC108 Silent p.C749C 0.27 TCGA-LN-A9FR-01 2 36776815 36776815 C G CRIM1 3'UTR 0.24 TCGA-LN-A9FR-01 2 66739317 66739317 C T MEIS1 Missense_Mutation p.T260I 0.11 tolerated(0.06) possibly_damaging(0.713) TCGA-LN-A9FR-01 2 71336956 71336956 T C MCEE 3'UTR 0.26 TCGA-LN-A9FR-01 2 98418927 98418928 - A TMEM131 Frame_Shift_Ins p.S872Ffs*9 0.28 TCGA-LN-A9FR-01 2 99234901 99234901 A G UNC50 3'UTR 0.29 TCGA-LN-A9FR-01 3 108836849 108836849 C T MORC1 Missense_Mutation p.A20T 0.26 tolerated(0.76) benign(0.391) TCGA-LN-A9FR-01 3 137886121 137886121 C A DBR1 Missense_Mutation p.L172F 0.31 tolerated(0.05) possibly_damaging(0.795) TCGA-LN-A9FR-01 3 149683744 149683744 T A PFN2 3'UTR 0.37 TCGA-LN-A9FR-01 3 154889996 154889996 G T MME Missense_Mutation p.A691S 0.43 deleterious(0.05) probably_damaging(0.909) TCGA-LN-A9FR-01 3 164059164 164059164 G T MIR720 RNA 0.23 TCGA-LN-A9FR-01 3 164700808 164700808 T C SI Silent p.V1743V 0.21 TCGA-LN-A9FR-01 3 164709998 164709998 G A SI Silent p.Y1650Y 0.26 TCGA-LN-A9FR-01 3 50357844 50357844 G A HYAL2 Missense_Mutation p.T26I 0.62 deleterious(0) probably_damaging(0.993) TCGA-LN-A9FR-01 3 69105806 69105806 T A UBA3 Missense_Mutation p.D347V 0.35 deleterious(0) probably_damaging(0.993) TCGA-LN-A9FR-01 4 107844979 107844979 T G DKK2 3'UTR 0.28 TCGA-LN-A9FR-01 4 36230984 36230984 T C ARAP2 Missense_Mutation p.N42S 0.47 deleterious(0.04) benign(0.411) TCGA-LN-A9FR-01 4 55964887 55964887 T C KDR Missense_Mutation p.I784V 0.47 tolerated(0.07) benign(0.012) TCGA-LN-A9FR-01 5 1279450 1279450 G A TERT Missense_Mutation p.R696C 0.21 deleterious(0) probably_damaging(0.953) TCGA-LN-A9FR-01 5 137230250 137230250 C T PKD2L2 Missense_Mutation p.T159I 0.30 deleterious(0) possibly_damaging(0.697) TCGA-LN-A9FR-01 5 140215472 140215472 C A PCDHA7 Missense_Mutation p.R502S 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.692) TCGA-LN-A9FR-01 5 38475819 38475819 G T LIFR 3'UTR 0.46 TCGA-LN-A9FR-01 5 38942960 38942960 A C RICTOR Nonsense_Mutation p.L1676* 0.14 TCGA-LN-A9FR-01 6 26285573 26285573 T C HIST1H4H Missense_Mutation p.Y52C 0.34 deleterious(0) probably_damaging(0.962) TCGA-LN-A9FR-01 6 32014070 32014070 G C TNXB 5'Flank 0.34 TCGA-LN-A9FR-01 6 32014071 32014071 G T TNXB 5'Flank 0.34 TCGA-LN-A9FR-01 6 53373988 53373988 T C GCLC Missense_Mutation p.I272V 0.23 tolerated(0.43) benign(0.034) TCGA-LN-A9FR-01 7 110763077 110763077 A T LRRN3 Missense_Mutation p.K83N 0.39 tolerated(0.14) benign(0.005) TCGA-LN-A9FR-01 7 113519505 113519505 G T PPP1R3A Missense_Mutation p.P548T 0.17 tolerated(0.44) benign(0.164) TCGA-LN-A9FR-01 7 33423379 33423379 G A BBS9 Missense_Mutation p.D631N 0.12 tolerated(0.07) possibly_damaging(0.885) TCGA-LN-A9FR-01 7 38468072 38468072 G T AMPH Intron 0.42 TCGA-LN-A9FR-01 7 38468073 38468073 C T AMPH Intron 0.42 TCGA-LN-A9FR-01 7 50547550 50547550 C A DDC Missense_Mutation p.R319I 0.17 tolerated(0.07) benign(0.278) TCGA-LN-A9FR-01 7 94297434 94297434 C A PEG10 3'UTR 0.32 TCGA-LN-A9FR-01 7 99672873 99672873 G A ZNF3 Silent p.T52T 0.29 TCGA-LN-A9FR-01 8 116422600 116422600 C A TRPS1 3'UTR 0.09 TCGA-LN-A9FR-01 8 145753146 145753146 G C C8orf82 Missense_Mutation p.F77L 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-LN-A9FR-01 8 67066571 67066571 T C TRIM55 Splice_Site p.X508_splice 0.25 TCGA-LN-A9FR-01 9 115233028 115233028 C G HSDL2 3'UTR 0.67 TCGA-LN-A9FR-01 9 133284204 133284204 G A HMCN2 5'Flank 0.41 TCGA-LN-A9FR-01 9 139413049 139413049 G A NOTCH1 Missense_Mutation p.R365C 0.43 deleterious(0.01) possibly_damaging(0.901) TCGA-LN-A9FR-01 9 140482240 140482240 A T ZMYND19 Silent p.A49A 0.30 TCGA-LN-A9FR-01 9 18721596 18721596 C G ADAMTSL1 Missense_Mutation p.L647V 0.35 deleterious(0.01) possibly_damaging(0.507) TCGA-LN-A9FR-01 X 153289416 153289416 C A IRAK1 5'Flank 0.65 TCGA-M9-A5M8-01 10 12155007 12155007 C T DHTKD1 Missense_Mutation p.R755W 0.27 deleterious(0) probably_damaging(1) TCGA-M9-A5M8-01 10 27459855 27459855 G A MASTL Missense_Mutation p.R656Q 0.28 deleterious(0.04) benign(0.124) TCGA-M9-A5M8-01 10 43977986 43977986 C A ZNF487 3'UTR 0.09 TCGA-M9-A5M8-01 10 45941026 45941026 G A ALOX5 Missense_Mutation p.R639H 0.38 deleterious(0.01) benign(0.025) TCGA-M9-A5M8-01 11 102667492 102667492 T A MMP1 Silent p.G176G 0.28 TCGA-M9-A5M8-01 11 132177606 132177606 G A NTM Missense_Mutation p.E184K 0.27 deleterious(0) probably_damaging(0.962) TCGA-M9-A5M8-01 11 133791054 133791054 C T IGSF9B Missense_Mutation p.G856S 0.34 deleterious(0) probably_damaging(1) TCGA-M9-A5M8-01 11 74992149 74992149 G A ARRB1 Missense_Mutation p.A151V 0.45 deleterious(0.05) possibly_damaging(0.87) TCGA-M9-A5M8-01 12 110476102 110476102 C A ANKRD13A 3'UTR 0.22 TCGA-M9-A5M8-01 12 112119530 112119530 C T BRAP Silent p.P118P 0.06 TCGA-M9-A5M8-01 12 49221667 49221667 C T CACNB3 Silent p.P480P 0.40 TCGA-M9-A5M8-01 12 54764155 54764155 C A ZNF385A Missense_Mutation p.R349L 0.43 deleterious(0) possibly_damaging(0.9) TCGA-M9-A5M8-01 12 74686321 74686321 G A RP11-81H3.2 RNA 0.29 TCGA-M9-A5M8-01 12 78513342 78513344 TGT - NAV3 In_Frame_Del p.V1124del 0.35 TCGA-M9-A5M8-01 13 100635191 100635191 C G ZIC2 Missense_Mutation p.H291Q 0.33 deleterious(0) probably_damaging(0.998) TCGA-M9-A5M8-01 13 52976765 52976765 C T THSD1 5'UTR 0.57 TCGA-M9-A5M8-01 14 93275649 93275649 A G GOLGA5 Silent p.L259L 0.42 TCGA-M9-A5M8-01 15 75015146 75015146 C T CYP1A1 Missense_Mutation p.R98Q 0.16 tolerated(0.23) benign(0.064) TCGA-M9-A5M8-01 15 79288108 79288108 T A RASGRF1 Missense_Mutation p.I1017F 0.45 tolerated(0.07) benign(0.078) TCGA-M9-A5M8-01 15 88521476 88521476 G A NTRK3 Intron 0.43 TCGA-M9-A5M8-01 16 2160250 2160250 C T PKD1 Missense_Mutation p.G1640S 0.27 benign(0.053) TCGA-M9-A5M8-01 16 66919132 66919132 C T PDP2 Silent p.A315A 0.29 TCGA-M9-A5M8-01 16 88803061 88803061 G C PIEZO1 Missense_Mutation p.L428V 0.41 deleterious(0) possibly_damaging(0.511) TCGA-M9-A5M8-01 17 38562642 38562642 G A TOP2A Silent p.I649I 0.46 TCGA-M9-A5M8-01 17 38562681 38562681 G A TOP2A Silent p.I636I 0.50 TCGA-M9-A5M8-01 17 38562866 38562866 G A TOP2A Missense_Mutation p.H605Y 0.47 tolerated(1) benign(0.001) TCGA-M9-A5M8-01 17 38562902 38562902 G A TOP2A Missense_Mutation p.P593S 0.46 deleterious(0) probably_damaging(0.996) TCGA-M9-A5M8-01 17 38563099 38563099 G A TOP2A Silent p.I574I 0.42 TCGA-M9-A5M8-01 17 39240566 39240566 G A KRTAP4-7 Silent p.R36R 0.07 TCGA-M9-A5M8-01 17 39240594 39240594 G C KRTAP4-7 Missense_Mutation p.V46L 0.07 deleterious(0.04) unknown(0) TCGA-M9-A5M8-01 17 39382934 39382934 C T KRTAP9-2 Nonsense_Mutation p.Q10* 0.06 TCGA-M9-A5M8-01 17 39411794 39411794 C G KRTAP9-9 Missense_Mutation p.Q53E 0.19 tolerated(0.24) unknown(0) TCGA-M9-A5M8-01 17 39411957 39411957 C T KRTAP9-9 Missense_Mutation p.A107V 0.18 tolerated(0.31) possibly_damaging(0.794) TCGA-M9-A5M8-01 17 40937166 40937166 A T WNK4 Missense_Mutation p.I408F 0.19 deleterious(0) unknown(0) TCGA-M9-A5M8-01 17 78032414 78032414 G T CCDC40 Silent p.T427T 0.33 TCGA-M9-A5M8-01 18 13740208 13740208 A T RNMT Missense_Mutation p.E241V 0.27 deleterious(0.03) possibly_damaging(0.493) TCGA-M9-A5M8-01 18 44424026 44424026 C T PIAS2 Silent p.L344L 0.05 TCGA-M9-A5M8-01 19 19654085 19654085 C T CILP2 Nonsense_Mutation p.R336* 0.23 TCGA-M9-A5M8-01 19 2425009 2425009 C G TMPRSS9 Missense_Mutation p.D875E 0.24 deleterious(0.02) probably_damaging(0.981) TCGA-M9-A5M8-01 19 43568678 43568678 A C PSG2 3'UTR 0.33 TCGA-M9-A5M8-01 19 4510468 4510468 C T PLIN4 Silent p.A1154A 0.23 TCGA-M9-A5M8-01 19 4538512 4538512 C T LRG1 Missense_Mutation p.G162S 0.27 tolerated(0.1) possibly_damaging(0.604) TCGA-M9-A5M8-01 19 46825047 46825047 C T HIF3A Missense_Mutation p.R387W 0.36 deleterious(0.04) benign(0.008) TCGA-M9-A5M8-01 19 50922242 50922245 AGTA - SPIB Splice_Site p.X8_splice 0.26 TCGA-M9-A5M8-01 19 53453725 53453725 G T ZNF816 Silent p.R435R 0.33 TCGA-M9-A5M8-01 19 53856048 53856048 T A ZNF845 Missense_Mutation p.I707K 0.07 tolerated(0.34) benign(0.415) TCGA-M9-A5M8-01 19 53886069 53886069 C A ZNF525 3'UTR 0.17 TCGA-M9-A5M8-01 19 54188291 54188291 C A MIR515-2 RNA 0.41 TCGA-M9-A5M8-01 19 57134234 57134234 G A ZNF71 3'UTR 0.28 TCGA-M9-A5M8-01 19 57175697 57175697 G A ZNF835 Silent p.I290I 0.08 TCGA-M9-A5M8-01 19 57326178 57326178 T C PEG3 Missense_Mutation p.N1211S 0.32 tolerated(0.75) benign(0.179) TCGA-M9-A5M8-01 19 9063581 9063581 C T MUC16 Silent p.E7955E 0.30 TCGA-M9-A5M8-01 1 107691110 107691110 C T NTNG1 5'UTR 0.33 TCGA-M9-A5M8-01 1 115167897 115167898 - T DENND2C Frame_Shift_Ins p.Y237Ifs*3 0.33 TCGA-M9-A5M8-01 1 149398941 149398941 C A HIST2H3PS2 3'Flank 0.25 TCGA-M9-A5M8-01 1 158324285 158324285 G C CD1E Silent p.L59L 0.31 TCGA-M9-A5M8-01 1 16269989 16269989 C T ZBTB17 Missense_Mutation p.M534I 0.28 tolerated(0.87) benign(0.001) TCGA-M9-A5M8-01 1 165865444 165865444 C T UCK2 Missense_Mutation p.T125I 0.35 tolerated(0.08) benign(0.227) TCGA-M9-A5M8-01 1 171181679 171181679 A T FMO2 3'UTR 0.16 TCGA-M9-A5M8-01 1 171605481 171605481 C T MYOC Missense_Mutation p.G367R 0.30 deleterious(0) probably_damaging(1) TCGA-M9-A5M8-01 1 173486717 173486717 G A SLC9C2 Missense_Mutation p.R956C 0.40 deleterious(0.04) benign(0.017) TCGA-M9-A5M8-01 1 185962324 185962324 C A HMCN1 Missense_Mutation p.L1130I 0.21 probably_damaging(0.994) TCGA-M9-A5M8-01 1 206765049 206765049 A C EIF2D 3'UTR 0.30 TCGA-M9-A5M8-01 1 236176855 236176855 C T NID1 Missense_Mutation p.V754M 0.37 tolerated(0.16) benign(0.004) TCGA-M9-A5M8-01 1 245849060 245849060 G A KIF26B Silent p.T925T 0.20 TCGA-M9-A5M8-01 1 247151190 247151190 C A ZNF695 Missense_Mutation p.E209D 0.28 deleterious(0.04) possibly_damaging(0.454) TCGA-M9-A5M8-01 1 40363231 40363231 G A MYCL Missense_Mutation p.A333V 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-M9-A5M8-01 20 17934727 17934727 C A SNX5 Missense_Mutation p.G101V 0.29 deleterious(0.01) possibly_damaging(0.594) TCGA-M9-A5M8-01 20 9518667 9518667 C T PAK7 3'UTR 0.43 TCGA-M9-A5M8-01 21 31023452 31023452 C A GRIK1 Missense_Mutation p.D314Y 0.35 deleterious(0.01) benign(0.299) TCGA-M9-A5M8-01 22 29490307 29490307 C T KREMEN1 Silent p.G53G 0.32 TCGA-M9-A5M8-01 22 33255310 33255310 G A TIMP3 Nonsense_Mutation p.W194* 0.34 TCGA-M9-A5M8-01 2 10193884 10193884 A C KLF11 3'UTR 0.26 TCGA-M9-A5M8-01 2 11774344 11774344 G A GREB1 Silent p.L1693L 0.21 TCGA-M9-A5M8-01 2 124783303 124783303 A T CNTNAP5 Missense_Mutation p.T26S 0.30 tolerated(0.53) benign(0.003) TCGA-M9-A5M8-01 2 141571273 141571273 T G LRP1B Missense_Mutation p.E1771A 0.27 benign(0.292) TCGA-M9-A5M8-01 2 143913112 143913112 G A ARHGAP15 Missense_Mutation p.R18H 0.25 tolerated(0.15) benign(0) TCGA-M9-A5M8-01 2 160252323 160252332 TGTTGTCGCC - BAZ2B Frame_Shift_Del p.R1008Tfs*2 0.27 TCGA-M9-A5M8-01 2 179611821 179611821 A G TTN Intron 0.28 TCGA-M9-A5M8-01 2 190660583 190660583 A G PMS1 Missense_Mutation p.Y74C 0.23 deleterious(0.02) benign(0.362) TCGA-M9-A5M8-01 2 198950163 198950163 G C PLCL1 Missense_Mutation p.R641T 0.16 deleterious(0) probably_damaging(0.996) TCGA-M9-A5M8-01 2 235402776 235402777 - AGC ARL4C 3'UTR 0.37 TCGA-M9-A5M8-01 2 26654871 26654871 G A DRC1 Silent p.V295V 0.26 TCGA-M9-A5M8-01 2 36986238 36986238 C T VIT Intron 0.37 TCGA-M9-A5M8-01 3 100963578 100963578 A G IMPG2 Missense_Mutation p.S533P 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-M9-A5M8-01 3 123634512 123634512 G A CCDC14 Missense_Mutation p.A618V 0.35 tolerated(1) benign(0) TCGA-M9-A5M8-01 3 126268845 126268845 A G C3orf22 Missense_Mutation p.C98R 0.26 tolerated(0.69) probably_damaging(0.919) TCGA-M9-A5M8-01 3 193854764 193854764 C T HES1 Silent p.S73S 0.31 TCGA-M9-A5M8-01 3 58196709 58196709 A G DNASE1L3 Intron 0.40 TCGA-M9-A5M8-01 3 78688924 78688924 C T ROBO1 Missense_Mutation p.D1003N 0.57 deleterious(0.03) probably_damaging(0.981) TCGA-M9-A5M8-01 4 1333394 1333394 C T MAEA 3'UTR 0.27 TCGA-M9-A5M8-01 5 140263741 140263741 G A PCDHA13 Missense_Mutation p.E630K 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.902) TCGA-M9-A5M8-01 5 171469477 171469477 C T STK10 3'UTR 0.45 TCGA-M9-A5M8-01 5 33577086 33577087 - T ADAMTS12 Frame_Shift_Ins p.N1015Kfs*25 0.37 TCGA-M9-A5M8-01 5 56167793 56167793 A T MAP3K1 Missense_Mutation p.E453V 0.29 deleterious(0.04) probably_damaging(0.92) TCGA-M9-A5M8-01 5 95746477 95746477 C T PCSK1 Splice_Site p.X365_splice 0.43 TCGA-M9-A5M8-01 6 109819047 109819047 G A AK9 Missense_Mutation p.A1723V 0.27 tolerated(0.27) probably_damaging(0.997) TCGA-M9-A5M8-01 6 161006106 161006106 G A LPA Missense_Mutation p.R1421W 0.32 deleterious(0.02) probably_damaging(0.963) TCGA-M9-A5M8-01 6 27114613 27114613 G C HIST1H2BK 5'UTR 0.42 TCGA-M9-A5M8-01 6 6007014 6007014 G A NRN1 5'UTR 0.30 TCGA-M9-A5M8-01 6 97587239 97587239 C A KLHL32 3'UTR 0.30 TCGA-M9-A5M8-01 7 127233844 127233844 G T FSCN3 5'UTR 0.32 TCGA-M9-A5M8-01 7 149561401 149561401 G A ZNF862 3'UTR 0.29 TCGA-M9-A5M8-01 7 21723507 21723507 T C DNAH11 Missense_Mutation p.F1863L 0.04 benign(0.094) TCGA-M9-A5M8-01 7 70256588 70256588 C T AUTS2 3'UTR 0.18 TCGA-M9-A5M8-01 7 80303349 80303349 T G CD36 Silent p.T435T 0.37 TCGA-M9-A5M8-01 7 82996787 82996787 T C SEMA3E 3'UTR 0.42 TCGA-M9-A5M8-01 7 86494002 86494002 C T GRM3 3'UTR 0.47 TCGA-M9-A5M8-01 8 101269496 101269496 A T RNF19A 3'UTR 0.42 TCGA-M9-A5M8-01 8 103283449 103283449 C T UBR5 Missense_Mutation p.R2333Q 0.30 tolerated(0.16) benign(0) TCGA-M9-A5M8-01 8 2910146 2910146 A G CSMD1 Missense_Mutation p.S2500P 0.10 benign(0.004) TCGA-M9-A5M8-01 8 35624429 35624429 T A UNC5D Missense_Mutation p.F775I 0.29 deleterious(0) probably_damaging(0.997) TCGA-M9-A5M8-01 8 49833768 49833768 G C SNAI2 Nonsense_Mutation p.Y19* 0.49 TCGA-M9-A5M8-01 8 51617159 51617159 G A SNTG1 Splice_Site p.X347_splice 0.30 TCGA-M9-A5M8-01 8 71486166 71486166 G A AC120194.1 5'UTR 0.38 TCGA-M9-A5M8-01 8 86019437 86019437 C T LRRCC1 5'UTR 0.55 TCGA-M9-A5M8-01 9 117098525 117098526 CA - AKNA 3'UTR 0.16 TCGA-M9-A5M8-01 9 17135270 17135271 - G CNTLN Frame_Shift_Ins p.A72Gfs*51 0.44 TCGA-M9-A5M8-01 9 21970899 21970899 A G CDKN2A Splice_Site p.X153_splice 0.19 TCGA-M9-A5M8-01 9 8636802 8636802 A T PTPRD Missense_Mutation p.V36D 0.52 deleterious(0) probably_damaging(1) TCGA-M9-A5M8-01 9 99262951 99262951 C T CDC14B 3'UTR 0.41 TCGA-M9-A5M8-01 X 100807920 100807920 C T ARMCX1 Missense_Mutation p.R3C 0.27 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-M9-A5M8-01 X 133560224 133560224 T C PHF6 3'UTR 0.39 TCGA-M9-A5M8-01 X 151424445 151424445 C T GABRA3 Missense_Mutation p.R119Q 0.27 deleterious(0) probably_damaging(0.987) TCGA-M9-A5M8-01 X 41000020 41000020 A C USP9X Missense_Mutation p.I256L 0.07 tolerated(0.7) benign(0.321) TCGA-M9-A5M8-01 X 48664042 48664042 G A HDAC6 Missense_Mutation p.R134Q 0.36 tolerated(0.07) possibly_damaging(0.624) TCGA-M9-A5M8-01 X 48674050 48674050 G A HDAC6 Splice_Site p.X442_splice 0.05 TCGA-M9-A5M8-01 X 66905892 66905892 T C AR Silent p.T603T 0.15 TCGA-Q9-A6FU-01 10 127708322 127708322 G C ADAM12 Missense_Mutation p.H871D 0.36 tolerated(0.61) benign(0.001) TCGA-Q9-A6FU-01 10 134672745 134672745 C G TTC40 Silent p.L1735L 0.50 TCGA-Q9-A6FU-01 10 16562630 16562630 G A C1QL3 Silent p.F145F 0.24 TCGA-Q9-A6FU-01 10 26790197 26790197 C T APBB1IP Intron 0.38 TCGA-Q9-A6FU-01 10 27536913 27536913 T C RP11-85G18.6 Intron 0.33 TCGA-Q9-A6FU-01 10 28224072 28224072 C T ARMC4 Missense_Mutation p.E788K 0.22 tolerated(0.62) possibly_damaging(0.507) TCGA-Q9-A6FU-01 10 32311947 32311947 G A KIF5B Silent p.G581G 0.29 TCGA-Q9-A6FU-01 10 43600603 43600603 G C RET Missense_Mutation p.D277H 0.42 deleterious(0.02) possibly_damaging(0.872) TCGA-Q9-A6FU-01 10 7601726 7601726 C A ITIH5 3'UTR 0.50 TCGA-Q9-A6FU-01 10 91099326 91099326 A G IFIT3 Missense_Mutation p.E305G 0.48 deleterious(0) probably_damaging(0.932) TCGA-Q9-A6FU-01 10 99343606 99343606 C T ANKRD2 3'UTR 0.35 TCGA-Q9-A6FU-01 11 105852133 105852133 C G GRIA4 3'UTR 0.37 TCGA-Q9-A6FU-01 11 22281209 22281209 G A ANO5 Missense_Mutation p.G518R 0.22 deleterious(0) probably_damaging(0.977) TCGA-Q9-A6FU-01 11 27017112 27017112 C T FIBIN 3'UTR 0.27 TCGA-Q9-A6FU-01 11 32120056 32120056 G A RCN1 Missense_Mutation p.M203I 0.11 deleterious(0) probably_damaging(1) TCGA-Q9-A6FU-01 11 32949549 32949549 A G QSER1 5'UTR 0.33 TCGA-Q9-A6FU-01 11 33770429 33770429 C T FBXO3 Missense_Mutation p.M314I 0.28 deleterious(0) probably_damaging(0.985) TCGA-Q9-A6FU-01 11 3380466 3380466 G C ZNF195 Nonsense_Mutation p.S591* 0.33 TCGA-Q9-A6FU-01 11 5443799 5443799 C A OR51Q1 Missense_Mutation p.D123E 0.21 deleterious(0) possibly_damaging(0.724) TCGA-Q9-A6FU-01 11 55135647 55135647 C T OR4A15 Silent p.F96F 0.24 TCGA-Q9-A6FU-01 11 5655908 5655908 G A TRIM34 Silent p.Q189Q 0.33 TCGA-Q9-A6FU-01 11 58190052 58190052 G A OR5B2 Missense_Mutation p.S228L 0.39 deleterious_low_confidence(0) possibly_damaging(0.658) TCGA-Q9-A6FU-01 11 58388401 58388401 G T ZFP91 3'UTR 0.25 TCGA-Q9-A6FU-01 11 59224784 59224784 G A OR4D6 Silent p.V117V 0.14 TCGA-Q9-A6FU-01 11 61166217 61166217 C T TMEM216 3'UTR 0.19 TCGA-Q9-A6FU-01 11 70316128 70316128 C T SHANK2 3'UTR 0.45 TCGA-Q9-A6FU-01 11 7111257 7111257 C T RBMXL2 Silent p.Y302Y 0.12 TCGA-Q9-A6FU-01 11 78565338 78565338 C G TENM4 Missense_Mutation p.D498H 0.19 deleterious(0) probably_damaging(0.98) TCGA-Q9-A6FU-01 11 89935146 89935146 C T CHORDC1 3'UTR 0.47 TCGA-Q9-A6FU-01 12 132626103 132626103 G A DDX51 Silent p.G348G 0.09 TCGA-Q9-A6FU-01 12 133272599 133272599 C T PXMP2 Silent p.L122L 0.23 TCGA-Q9-A6FU-01 12 13529360 13529360 C G C12orf36 Splice_Site 0.30 TCGA-Q9-A6FU-01 12 15811043 15811043 C T EPS8 Silent p.L357L 0.29 TCGA-Q9-A6FU-01 12 50870804 50870804 A T LARP4 3'UTR 0.31 TCGA-Q9-A6FU-01 12 51213717 51213717 G C ATF1 3'UTR 0.33 TCGA-Q9-A6FU-01 12 57398627 57398627 G C ZBTB39 Silent p.L25L 0.23 TCGA-Q9-A6FU-01 12 66546114 66546114 C G TMBIM4 Missense_Mutation p.L83F 0.28 tolerated(0.1) benign(0.028) TCGA-Q9-A6FU-01 12 7637735 7637735 C G CD163 Missense_Mutation p.K912N 0.39 tolerated(0.27) benign(0.063) TCGA-Q9-A6FU-01 12 78225209 78225209 C G NAV3 5'UTR 0.24 TCGA-Q9-A6FU-01 12 7882268 7882268 T C CLEC4C Missense_Mutation p.E189G 0.12 tolerated(0.44) benign(0.004) TCGA-Q9-A6FU-01 12 89745616 89745616 C T DUSP6 Silent p.Q67Q 0.31 TCGA-Q9-A6FU-01 12 99065330 99065330 G A APAF1 Silent p.E542E 0.16 TCGA-Q9-A6FU-01 13 100215132 100215132 C G TM9SF2 3'UTR 0.67 TCGA-Q9-A6FU-01 13 113803401 113803401 G A F10 Missense_Mutation p.R346H 0.52 deleterious(0.04) benign(0.307) TCGA-Q9-A6FU-01 13 21417979 21417979 G C XPO4 Nonsense_Mutation p.S168* 0.17 TCGA-Q9-A6FU-01 13 42439942 42439942 C A VWA8 Missense_Mutation p.G452V 0.35 deleterious(0) probably_damaging(0.997) TCGA-Q9-A6FU-01 14 106622151 106622151 G C IGHV3-16 Missense_Mutation p.Q32E 0.29 deleterious_low_confidence(0.01) benign(0.137) TCGA-Q9-A6FU-01 14 106926605 106926605 A C IGHV3-43 Missense_Mutation p.L14V 0.31 deleterious_low_confidence(0) benign(0.111) TCGA-Q9-A6FU-01 14 52505686 52505686 G C NID2 Missense_Mutation p.S679C 0.25 deleterious(0) benign(0.113) TCGA-Q9-A6FU-01 14 64518452 64518452 G T SYNE2 Missense_Mutation p.W2607C 0.26 possibly_damaging(0.902) TCGA-Q9-A6FU-01 14 69707767 69707767 C G EXD2 Missense_Mutation p.Q606E 0.27 tolerated(1) benign(0.001) TCGA-Q9-A6FU-01 14 69707805 69707805 C G EXD2 Missense_Mutation p.I618M 0.36 deleterious(0.03) benign(0.167) TCGA-Q9-A6FU-01 15 30395997 30395997 G C ULK4P3 RNA 0.07 TCGA-Q9-A6FU-01 15 42285008 42285008 C T PLA2G4E Missense_Mutation p.R466H 0.55 deleterious(0.03) benign(0.099) TCGA-Q9-A6FU-01 15 44843706 44843706 G A EIF3J Missense_Mutation p.E94K 0.35 deleterious(0.04) unknown(0) TCGA-Q9-A6FU-01 15 45399058 45399058 G C DUOX2 Silent p.T601T 0.26 TCGA-Q9-A6FU-01 15 48053870 48053870 G A SEMA6D Missense_Mutation p.E154K 0.27 deleterious(0) possibly_damaging(0.517) TCGA-Q9-A6FU-01 15 56390515 56390515 G C RFX7 Missense_Mutation p.Q291E 0.28 deleterious(0.03) possibly_damaging(0.526) TCGA-Q9-A6FU-01 15 56436654 56436654 C G RFX7 Missense_Mutation p.E75Q 0.18 tolerated(0.1) benign(0.012) TCGA-Q9-A6FU-01 15 56720564 56720564 G C TEX9 Splice_Site p.X367_splice 0.23 TCGA-Q9-A6FU-01 15 56720645 56720645 G C TEX9 3'UTR 0.32 TCGA-Q9-A6FU-01 15 56993148 56993148 G C ZNF280D Missense_Mutation p.Q122E 0.05 tolerated(0.06) possibly_damaging(0.785) TCGA-Q9-A6FU-01 15 75198649 75198649 G A FAM219B Missense_Mutation p.S91L 0.21 tolerated(0.24) benign(0.002) TCGA-Q9-A6FU-01 15 86122760 86122760 G C AKAP13 Missense_Mutation p.M487I 0.35 tolerated_low_confidence(0.26) benign(0.013) TCGA-Q9-A6FU-01 15 96881960 96881960 G A NR2F2 3'UTR 0.32 TCGA-Q9-A6FU-01 16 17353166 17353166 C G XYLT1 Missense_Mutation p.E198Q 0.23 tolerated_low_confidence(0.2) benign(0.011) TCGA-Q9-A6FU-01 16 2814594 2814594 G C SRRM2 Missense_Mutation p.L1355F 0.47 unknown(0) TCGA-Q9-A6FU-01 16 46782047 46782047 G A MYLK3 Missense_Mutation p.T20I 0.22 tolerated_low_confidence(0.09) benign(0) TCGA-Q9-A6FU-01 16 57280047 57280047 A C ARL2BP Missense_Mutation p.I32L 0.17 tolerated(0.3) possibly_damaging(0.599) TCGA-Q9-A6FU-01 16 58580291 58580291 C G CNOT1 Missense_Mutation p.E1314Q 0.23 tolerated(0.36) benign(0.029) TCGA-Q9-A6FU-01 16 68893888 68893888 C G TANGO6 Missense_Mutation p.Q66E 0.27 tolerated(1) benign(0) TCGA-Q9-A6FU-01 16 746901 746901 C T FBXL16 Missense_Mutation p.E169K 0.42 tolerated(0.06) benign(0.047) TCGA-Q9-A6FU-01 17 21102020 21102020 G C TMEM11 Missense_Mutation p.R66G 0.41 deleterious(0) benign(0.119) TCGA-Q9-A6FU-01 17 42392345 42392345 C G RUNDC3A Missense_Mutation p.I199M 0.27 deleterious(0) possibly_damaging(0.8) TCGA-Q9-A6FU-01 17 46627456 46627456 C G HOXB3 3'UTR 0.33 TCGA-Q9-A6FU-01 17 47132615 47132615 C T IGF2BP1 3'UTR 0.47 TCGA-Q9-A6FU-01 17 4721813 4721813 C T PLD2 Silent p.Y678Y 0.19 TCGA-Q9-A6FU-01 17 60059646 60059646 G A MED13 Missense_Mutation p.R1240C 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-Q9-A6FU-01 17 61681893 61681893 G A TACO1 Splice_Site p.X94_splice 0.37 TCGA-Q9-A6FU-01 17 61683700 61683700 G A TACO1 Missense_Mutation p.E139K 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-Q9-A6FU-01 17 75471827 75471827 G A SEPT9 Intron 0.62 TCGA-Q9-A6FU-01 17 79915689 79915689 C T NOTUM Missense_Mutation p.G230R 0.52 deleterious(0) probably_damaging(0.995) TCGA-Q9-A6FU-01 17 8125983 8125983 C G LINC00324 RNA 0.67 TCGA-Q9-A6FU-01 18 11852303 11852303 G C CHMP1B 3'UTR 0.67 TCGA-Q9-A6FU-01 18 48604764 48604764 T G SMAD4 Nonsense_Mutation p.L529* 0.39 TCGA-Q9-A6FU-01 19 10157199 10157199 G C C3P1 RNA 0.20 TCGA-Q9-A6FU-01 19 12186303 12186303 G C ZNF844 Missense_Mutation p.R123T 0.40 deleterious(0.03) possibly_damaging(0.587) TCGA-Q9-A6FU-01 19 34304803 34304803 C A KCTD15 3'UTR 0.32 TCGA-Q9-A6FU-01 19 42266010 42266010 A G CEACAM6 Silent p.Q279Q 0.27 TCGA-Q9-A6FU-01 19 46273462 46273462 C G DMPK 3'UTR 0.32 TCGA-Q9-A6FU-01 19 47278877 47278877 G A SLC1A5 Missense_Mutation p.P506S 0.35 tolerated(0.31) benign(0.009) TCGA-Q9-A6FU-01 19 49835424 49835424 A G CD37 5'Flank 0.07 TCGA-Q9-A6FU-01 19 50157957 50157957 C G SCAF1 Missense_Mutation p.P1150A 0.12 possibly_damaging(0.728) TCGA-Q9-A6FU-01 19 53472838 53472838 A G ZNF702P RNA 0.24 TCGA-Q9-A6FU-01 19 53761668 53761668 C G VN1R2 Missense_Mutation p.P14A 0.28 benign(0.035) TCGA-Q9-A6FU-01 19 54848413 54848413 T G LILRA4 Silent p.G318G 0.28 TCGA-Q9-A6FU-01 19 7505006 7505006 C T ARHGEF18 Silent p.S60S 0.32 TCGA-Q9-A6FU-01 1 100483235 100483235 C G SLC35A3 Intron 0.27 TCGA-Q9-A6FU-01 1 101196751 101196751 C T VCAM1 Intron 0.39 TCGA-Q9-A6FU-01 1 113460327 113460327 A G SLC16A1 Missense_Mutation p.I234T 0.33 tolerated(0.57) benign(0.004) TCGA-Q9-A6FU-01 1 113933837 113933837 C G MAGI3 Missense_Mutation p.S61W 0.29 deleterious(0) probably_damaging(0.981) TCGA-Q9-A6FU-01 1 11982770 11982770 G - KIAA2013 Frame_Shift_Del p.L604Sfs*33 0.31 TCGA-Q9-A6FU-01 1 142620925 142620925 A T RP11-417J8.6 RNA 0.15 TCGA-Q9-A6FU-01 1 145682022 145682022 G A RNF115 Splice_Site p.X143_splice 0.26 TCGA-Q9-A6FU-01 1 147097692 147097692 G C BCL9 3'UTR 0.29 TCGA-Q9-A6FU-01 1 16263967 16263967 T C SPEN Missense_Mutation p.S3446P 0.07 benign(0) TCGA-Q9-A6FU-01 1 19547378 19547378 G A EMC1 Intron 0.28 TCGA-Q9-A6FU-01 1 196683032 196683032 C T CFH Nonsense_Mutation p.Q502* 0.32 TCGA-Q9-A6FU-01 1 207243747 207243747 G A PFKFB2 Silent p.K405K 0.15 TCGA-Q9-A6FU-01 1 21050598 21050598 C T SH2D5 Silent p.L259L 0.28 TCGA-Q9-A6FU-01 1 227842420 227842420 G T ZNF678 Nonsense_Mutation p.E157* 0.37 TCGA-Q9-A6FU-01 1 231489015 231489015 C G SPRTN Missense_Mutation p.Q460E 0.40 tolerated(0.09) benign(0.08) TCGA-Q9-A6FU-01 1 247076573 247076573 C G AHCTF1 Missense_Mutation p.D182H 0.31 deleterious(0.01) probably_damaging(1) TCGA-Q9-A6FU-01 1 247076585 247076585 C G AHCTF1 Missense_Mutation p.D178H 0.27 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FU-01 1 248262873 248262873 T C OR2L13 Missense_Mutation p.S66P 0.30 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FU-01 1 34158555 34158555 C T CSMD2 Missense_Mutation p.E1303K 0.42 deleterious(0.02) probably_damaging(0.916) TCGA-Q9-A6FU-01 1 45479618 45479618 C G UROD Nonsense_Mutation p.S171* 0.29 TCGA-Q9-A6FU-01 1 68914383 68914383 C T RPE65 Silent p.E6E 0.07 TCGA-Q9-A6FU-01 1 8395601 8395601 C G SLC45A1 Missense_Mutation p.I516M 0.25 tolerated(0.34) possibly_damaging(0.864) TCGA-Q9-A6FU-01 20 2097509 2097509 G C STK35 Missense_Mutation p.D364H 0.21 deleterious(0) probably_damaging(0.984) TCGA-Q9-A6FU-01 20 33049899 33049899 C T ITCH Nonsense_Mutation p.Q474* 0.09 TCGA-Q9-A6FU-01 20 37383788 37383788 G C ACTR5 Missense_Mutation p.E322Q 0.15 deleterious(0.05) probably_damaging(0.957) TCGA-Q9-A6FU-01 20 3758928 3758928 G C SPEF1 Silent p.L214L 0.38 TCGA-Q9-A6FU-01 21 43165934 43165935 - G RIPK4 Frame_Shift_Ins p.E308Gfs*21 0.26 TCGA-Q9-A6FU-01 22 17072515 17072515 T G CCT8L2 Missense_Mutation p.K309T 0.22 deleterious(0.01) benign(0.339) TCGA-Q9-A6FU-01 22 22869365 22869365 G C ZNF280A Missense_Mutation p.P197R 0.10 tolerated(0.06) possibly_damaging(0.877) TCGA-Q9-A6FU-01 22 29455150 29455150 C G C22orf31 Missense_Mutation p.E151D 0.22 tolerated(0.07) possibly_damaging(0.54) TCGA-Q9-A6FU-01 22 31218649 31218649 C T OSBP2 Intron 0.57 TCGA-Q9-A6FU-01 22 31330084 31330084 C G MORC2 Missense_Mutation p.R701T 0.20 deleterious_low_confidence(0.01) benign(0.064) TCGA-Q9-A6FU-01 22 32802744 32802744 G C RTCB Missense_Mutation p.S82C 0.25 deleterious(0) probably_damaging(0.996) TCGA-Q9-A6FU-01 22 33673135 33673135 C G LARGE Missense_Mutation p.V662L 0.10 tolerated(0.05) benign(0.211) TCGA-Q9-A6FU-01 22 40757555 40757555 G A ADSL Missense_Mutation p.R309H 0.28 deleterious(0) probably_damaging(1) TCGA-Q9-A6FU-01 22 43027454 43027454 G A CYB5R3 Silent p.I85I 0.24 TCGA-Q9-A6FU-01 22 43616536 43616536 C T SCUBE1 Missense_Mutation p.R536H 0.29 tolerated(0.17) probably_damaging(0.999) TCGA-Q9-A6FU-01 2 100203676 100203676 C G AFF3 Missense_Mutation p.R869T 0.27 tolerated(0.41) benign(0.117) TCGA-Q9-A6FU-01 2 102781461 102781461 G A IL1R1 Missense_Mutation p.V97M 0.30 deleterious(0.03) possibly_damaging(0.884) TCGA-Q9-A6FU-01 2 128324310 128324310 T G MYO7B Missense_Mutation p.H126Q 0.37 tolerated(0.13) benign(0.027) TCGA-Q9-A6FU-01 2 149544028 149544028 G A EPC2 3'UTR 0.41 TCGA-Q9-A6FU-01 2 162268050 162268050 C T PSMD14 3'UTR 0.45 TCGA-Q9-A6FU-01 2 179325074 179325074 G A DFNB59 Splice_Site p.X223_splice 0.33 TCGA-Q9-A6FU-01 2 179397665 179397665 G C TTN Missense_Mutation p.I34559M 0.27 TCGA-Q9-A6FU-01 2 179441051 179441051 G A TTN Missense_Mutation p.L23270F 0.33 TCGA-Q9-A6FU-01 2 217142429 217142429 G A MARCH4 Silent p.Y277Y 0.26 TCGA-Q9-A6FU-01 2 231041301 231041301 G C SP110 Intron 0.38 TCGA-Q9-A6FU-01 2 239971224 239971224 T A HDAC4 3'UTR 0.19 TCGA-Q9-A6FU-01 2 32476497 32476497 G T NLRC4 Missense_Mutation p.H146N 0.29 tolerated(0.96) benign(0.015) TCGA-Q9-A6FU-01 2 32693623 32693623 G C BIRC6 Missense_Mutation p.D1967H 0.22 probably_damaging(0.997) TCGA-Q9-A6FU-01 2 39237798 39237798 C G SOS1 Missense_Mutation p.D813H 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-Q9-A6FU-01 2 44396133 44396133 C T PPM1B 5'UTR 0.28 TCGA-Q9-A6FU-01 2 48606340 48606340 C G FOXN2 3'UTR 0.21 TCGA-Q9-A6FU-01 2 70033541 70033541 G A ANXA4 Missense_Mutation p.E73K 0.35 deleterious(0.02) probably_damaging(0.999) TCGA-Q9-A6FU-01 2 89521478 89521478 C T IGKV2-28 Missense_Mutation p.D21N 0.33 deleterious(0.04) benign(0.168) TCGA-Q9-A6FU-01 2 99232694 99232694 G A UNC50 Silent p.V142V 0.05 TCGA-Q9-A6FU-01 3 127325492 127325492 G A MCM2 Silent p.V311V 0.24 TCGA-Q9-A6FU-01 3 130119967 130119967 C G COL6A5 Missense_Mutation p.H1362D 0.20 deleterious(0.01) benign(0.359) TCGA-Q9-A6FU-01 3 130694321 130694321 C T ATP2C1 Missense_Mutation p.A554V 0.11 tolerated(0.28) benign(0.058) TCGA-Q9-A6FU-01 3 142383112 142383112 G A PLS1 Silent p.E11E 0.13 TCGA-Q9-A6FU-01 3 150346029 150346029 G C SELT 3'UTR 0.16 TCGA-Q9-A6FU-01 3 150784127 150784127 C G CLRN1-AS1 RNA 0.12 TCGA-Q9-A6FU-01 3 151056001 151056001 G C P2RY12 Silent p.L211L 0.46 TCGA-Q9-A6FU-01 3 169526492 169526492 A G LRRC34 Missense_Mutation p.C61R 0.20 deleterious(0) probably_damaging(1) TCGA-Q9-A6FU-01 3 194842910 194842910 C T XXYLT1 Intron 0.24 TCGA-Q9-A6FU-01 3 31677544 31677544 G C STT3B Missense_Mutation p.K823N 0.10 deleterious_low_confidence(0.03) benign(0.039) TCGA-Q9-A6FU-01 3 32859540 32859540 C G TRIM71 5'UTR 0.67 TCGA-Q9-A6FU-01 3 50255369 50255369 C G SLC38A3 RNA 0.53 TCGA-Q9-A6FU-01 3 98298733 98298733 C T CPOX 3'UTR 0.28 TCGA-Q9-A6FU-01 4 113153085 113153085 C T AP1AR 5'UTR 0.33 TCGA-Q9-A6FU-01 4 126336956 126336956 C A FAT4 Missense_Mutation p.L2280I 0.27 probably_damaging(0.983) TCGA-Q9-A6FU-01 4 129193573 129193573 G C PGRMC2 Nonsense_Mutation p.S197* 0.29 TCGA-Q9-A6FU-01 4 140811293 140811293 G A MAML3 Missense_Mutation p.R433W 0.14 probably_damaging(0.999) TCGA-Q9-A6FU-01 4 143159120 143159120 C T INPP4B Missense_Mutation p.D245N 0.42 tolerated(0.05) probably_damaging(1) TCGA-Q9-A6FU-01 4 16900009 16900009 C G LDB2 Missense_Mutation p.E34Q 0.18 deleterious(0.03) possibly_damaging(0.817) TCGA-Q9-A6FU-01 4 3949436 3949436 C A FAM86EP RNA 0.29 TCGA-Q9-A6FU-01 4 438198 438198 C T ZNF721 Missense_Mutation p.D20N 0.33 tolerated(0.05) possibly_damaging(0.451) TCGA-Q9-A6FU-01 4 517563 517563 G C PIGG Missense_Mutation p.E644Q 0.36 tolerated(0.3) benign(0.033) TCGA-Q9-A6FU-01 4 74357670 74357670 G C AFM Missense_Mutation p.E309Q 0.52 tolerated(0.07) possibly_damaging(0.658) TCGA-Q9-A6FU-01 4 74719096 74719096 G C PF4V1 Missense_Mutation p.R6T 0.09 tolerated_low_confidence(0.18) unknown(0) TCGA-Q9-A6FU-01 4 78830473 78830473 G C MRPL1 Missense_Mutation p.E242Q 0.10 deleterious(0.04) possibly_damaging(0.863) TCGA-Q9-A6FU-01 4 91701735 91701735 G C CCSER1 Intron 0.45 TCGA-Q9-A6FU-01 4 941566 941566 A G TMEM175 Silent p.T13T 0.28 TCGA-Q9-A6FU-01 5 138208713 138208713 C G LRRTM2 Missense_Mutation p.E513Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FU-01 5 140215524 140215524 C T PCDHA7 Missense_Mutation p.A519V 0.55 deleterious_low_confidence(0.03) possibly_damaging(0.645) TCGA-Q9-A6FU-01 5 140536041 140536041 G A PCDHB17 Silent p.L155L 0.43 TCGA-Q9-A6FU-01 5 159822044 159822044 C T C5orf54 Missense_Mutation p.E152K 0.37 tolerated(0.1) benign(0.061) TCGA-Q9-A6FU-01 5 161117302 161117302 C A GABRA6 Missense_Mutation p.L257I 0.62 deleterious(0.02) probably_damaging(0.997) TCGA-Q9-A6FU-01 5 180687602 180687602 C T TRIM52 Silent p.A71A 0.47 TCGA-Q9-A6FU-01 5 41009477 41009477 C G MROH2B Missense_Mutation p.E1109Q 0.14 tolerated(0.34) benign(0.018) TCGA-Q9-A6FU-01 5 41510617 41510617 A T PLCXD3 Silent p.S4S 0.25 TCGA-Q9-A6FU-01 5 43492341 43492341 A G C5orf34 Missense_Mutation p.I519T 0.25 tolerated(0.12) benign(0.009) TCGA-Q9-A6FU-01 5 5059708 5059708 A C LINC01020 RNA 0.30 TCGA-Q9-A6FU-01 5 95150089 95150089 G C GLRX 3'UTR 0.30 TCGA-Q9-A6FU-01 6 133045810 133045810 C T VNN3 3'UTR 0.32 TCGA-Q9-A6FU-01 6 158492679 158492679 G A SYNJ2 Silent p.A662A 0.50 TCGA-Q9-A6FU-01 6 160908400 160908400 C T LPAL2 RNA 0.31 TCGA-Q9-A6FU-01 6 169857518 169857518 G A WDR27 3'UTR 0.45 TCGA-Q9-A6FU-01 6 29323469 29323469 G A OR5V1 Silent p.F168F 0.77 TCGA-Q9-A6FU-01 6 29640996 29640996 G A ZFP57 Missense_Mutation p.P298S 0.24 tolerated(0.17) possibly_damaging(0.547) TCGA-Q9-A6FU-01 6 51483924 51483924 G A PKHD1 Silent p.F4060F 0.29 TCGA-Q9-A6FU-01 6 74079456 74079456 G A OOEP Silent p.S20S 0.08 TCGA-Q9-A6FU-01 6 79668285 79668285 T C PHIP Missense_Mutation p.Y1230C 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-Q9-A6FU-01 6 84925088 84925088 C G KIAA1009 Missense_Mutation p.E139Q 0.26 deleterious(0.03) possibly_damaging(0.621) TCGA-Q9-A6FU-01 6 99347302 99347302 A T FBXL4 Missense_Mutation p.F387I 0.22 tolerated(0.07) possibly_damaging(0.724) TCGA-Q9-A6FU-01 7 136912218 136912218 A G PTN 3'UTR 0.32 TCGA-Q9-A6FU-01 7 142574200 142574200 G A TRPV6 Silent p.L241L 0.27 TCGA-Q9-A6FU-01 7 143453971 143453971 C T CTAGE6 Missense_Mutation p.D261N 0.11 tolerated(0.81) benign(0.03) TCGA-Q9-A6FU-01 7 154684078 154684078 C G DPP6 Missense_Mutation p.S829C 0.18 deleterious(0.02) benign(0.335) TCGA-Q9-A6FU-01 7 46729005 46729005 C T AC011294.3 Missense_Mutation p.R104H 0.36 benign(0.041) TCGA-Q9-A6FU-01 7 47933653 47933653 G C PKD1L1 Missense_Mutation p.Q759E 0.45 deleterious(0.01) probably_damaging(0.977) TCGA-Q9-A6FU-01 7 76903894 76903894 A T CCDC146 Silent p.V455V 0.45 TCGA-Q9-A6FU-01 7 91670145 91670145 A T AKAP9 Missense_Mutation p.E1617V 0.19 probably_damaging(0.999) TCGA-Q9-A6FU-01 8 104898029 104898029 G C RIMS2 Missense_Mutation p.R401T 0.32 tolerated_low_confidence(0.06) benign(0.009) TCGA-Q9-A6FU-01 8 110410724 110410724 G C PKHD1L1 Missense_Mutation p.S320T 0.24 tolerated(0.62) benign(0.006) TCGA-Q9-A6FU-01 8 130772830 130772830 G C GSDMC Missense_Mutation p.L228V 0.32 tolerated(0.24) probably_damaging(0.96) TCGA-Q9-A6FU-01 8 28997678 28997678 G A KIF13B Nonsense_Mutation p.R839* 0.43 TCGA-Q9-A6FU-01 8 36788577 36788577 G A KCNU1 Missense_Mutation p.D949N 0.06 tolerated(0.31) benign(0.004) TCGA-Q9-A6FU-01 8 39233345 39233345 C T ADAM5 RNA 0.26 TCGA-Q9-A6FU-01 8 77895531 77895531 G C PEX2 Nonsense_Mutation p.S295* 0.24 TCGA-Q9-A6FU-01 8 86573418 86573418 C A REXO1L1P 3'UTR 0.05 TCGA-Q9-A6FU-01 8 92086058 92086058 G C OTUD6B Splice_Site p.X109_splice 0.38 TCGA-Q9-A6FU-01 9 111659447 111659447 C G IKBKAP Missense_Mutation p.E828Q 0.25 tolerated(0.14) benign(0.364) TCGA-Q9-A6FU-01 9 111670649 111670649 C G IKBKAP Missense_Mutation p.G466R 0.68 deleterious(0.02) benign(0.445) TCGA-Q9-A6FU-01 9 123888025 123888025 G C CNTRL Missense_Mutation p.K612N 0.36 benign(0.027) TCGA-Q9-A6FU-01 9 34381385 34381385 C G C9orf24 Missense_Mutation p.E152Q 0.43 tolerated(0.12) probably_damaging(0.979) TCGA-Q9-A6FU-01 9 4793197 4793197 C T RCL1 Missense_Mutation p.R36W 0.37 deleterious(0) probably_damaging(0.992) TCGA-Q9-A6FU-01 9 71627781 71627781 C T PRKACG 3'UTR 0.08 TCGA-Q9-A6FU-01 9 72374807 72374807 C G PTAR1 Silent p.V16V 0.28 TCGA-Q9-A6FU-01 9 97081163 97081163 G C NUTM2F Missense_Mutation p.P619A 0.25 deleterious(0.02) probably_damaging(1) TCGA-Q9-A6FU-01 X 100105308 100105308 C T NOX1 Missense_Mutation p.G322E 0.27 deleterious(0) probably_damaging(1) TCGA-Q9-A6FU-01 X 110654101 110654101 C T DCX Silent p.G34G 0.27 TCGA-Q9-A6FU-01 X 122318240 122318240 G T GRIA3 5'UTR 0.37 TCGA-Q9-A6FU-01 X 135432293 135432293 G T GPR112 Missense_Mutation p.G2143V 0.21 deleterious(0.03) possibly_damaging(0.873) TCGA-Q9-A6FU-01 X 137717719 137717719 C T FGF13 Missense_Mutation p.R177Q 0.18 deleterious(0.01) possibly_damaging(0.79) TCGA-Q9-A6FU-01 X 140985178 140985178 A T MAGEC3 Missense_Mutation p.K545M 0.28 deleterious(0.01) possibly_damaging(0.869) TCGA-Q9-A6FU-01 X 153581174 153581174 G A FLNA Silent p.I2115I 0.43 TCGA-Q9-A6FU-01 X 153698330 153698330 C T PLXNA3 Silent p.L1602L 0.50 TCGA-Q9-A6FU-01 X 19391656 19391656 G C MAP3K15 Silent p.L977L 0.40 TCGA-Q9-A6FU-01 X 19418722 19418722 T A MAP3K15 Missense_Mutation p.E635V 0.35 deleterious(0.03) possibly_damaging(0.835) TCGA-Q9-A6FU-01 X 47074032 47074032 C G UBA1 Missense_Mutation p.Q1013E 0.28 deleterious(0) benign(0.102) TCGA-Q9-A6FU-01 X 49104664 49104664 T A CCDC22 Missense_Mutation p.C369S 0.50 tolerated(0.06) benign(0.063) TCGA-Q9-A6FU-01 X 50133337 50133337 G C DGKK RNA 0.31 TCGA-Q9-A6FU-01 X 53246370 53246370 G A KDM5C Silent p.S204S 0.19 TCGA-Q9-A6FU-01 X 53575129 53575129 T C HUWE1 Missense_Mutation p.S3381G 0.21 benign(0.153) TCGA-Q9-A6FU-01 X 54143073 54143073 C T FAM120C Missense_Mutation p.M739I 0.38 deleterious(0.03) probably_damaging(0.971) TCGA-Q9-A6FU-01 X 56295889 56295889 C T KLF8 Missense_Mutation p.S242L 0.23 tolerated(0.15) benign(0.007) TCGA-Q9-A6FW-01 10 12131151 12131151 C T DHTKD1 Missense_Mutation p.P295L 0.22 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 10 129535908 129535908 C T FOXI2 Missense_Mutation p.T124M 0.14 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 10 13686069 13686069 T C FRMD4A 3'UTR 0.12 TCGA-Q9-A6FW-01 10 35501470 35501470 C T CREM 3'UTR 0.11 TCGA-Q9-A6FW-01 10 55943308 55943308 T C PCDH15 Missense_Mutation p.N496D 0.06 tolerated(0.11) benign(0.118) TCGA-Q9-A6FW-01 10 70644118 70644118 C T STOX1 Missense_Mutation p.P189L 0.31 deleterious(0) probably_damaging(0.987) TCGA-Q9-A6FW-01 10 97816949 97816949 C A CCNJ Missense_Mutation p.R229S 0.09 tolerated(0.24) possibly_damaging(0.51) TCGA-Q9-A6FW-01 11 108164101 108164101 C T ATM Missense_Mutation p.T1558M 0.20 tolerated(0.12) benign(0.007) TCGA-Q9-A6FW-01 11 12376403 12376403 G T MICALCL Missense_Mutation p.E634D 0.21 tolerated(0.49) benign(0.075) TCGA-Q9-A6FW-01 11 125491029 125491029 A G STT3A 3'UTR 0.29 TCGA-Q9-A6FW-01 11 22398160 22398160 T G SLC17A6 Missense_Mutation p.V452G 0.14 deleterious(0) benign(0.099) TCGA-Q9-A6FW-01 11 34098007 34098007 G A CAPRIN1 Silent p.R197R 0.13 TCGA-Q9-A6FW-01 11 48161120 48161120 C T PTPRJ Silent p.G745G 0.16 TCGA-Q9-A6FW-01 11 5068408 5068408 C T OR52J3 Missense_Mutation p.S218L 0.04 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 11 51411456 51411456 G C OR4A5 Missense_Mutation p.L314V 0.07 deleterious_low_confidence(0.02) benign(0.007) TCGA-Q9-A6FW-01 11 51411866 51411866 T C OR4A5 Missense_Mutation p.D177G 0.07 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-Q9-A6FW-01 11 55703182 55703182 G A OR5I1 Missense_Mutation p.S232F 0.14 deleterious(0) possibly_damaging(0.812) TCGA-Q9-A6FW-01 11 56345015 56345015 G T OR5M10 Missense_Mutation p.F61L 0.09 deleterious(0.02) benign(0.053) TCGA-Q9-A6FW-01 11 56380545 56380545 A G OR5M1 Missense_Mutation p.V145A 0.24 tolerated(0.16) possibly_damaging(0.816) TCGA-Q9-A6FW-01 11 6239171 6239171 C T FAM160A2 Missense_Mutation p.D563N 0.16 tolerated(0.49) benign(0.393) TCGA-Q9-A6FW-01 11 64331893 64331893 C T SLC22A11 Missense_Mutation p.T312I 0.21 deleterious(0) probably_damaging(0.995) TCGA-Q9-A6FW-01 11 6478032 6478032 C T TRIM3 Silent p.S308S 0.17 TCGA-Q9-A6FW-01 11 64981529 64981529 C T CAPN1 3'Flank 0.15 TCGA-Q9-A6FW-01 11 65385641 65385641 C T PCNXL3 Missense_Mutation p.R270W 0.43 deleterious(0) possibly_damaging(0.727) TCGA-Q9-A6FW-01 11 92532369 92532369 C T FAT3 Missense_Mutation p.R2064C 0.14 probably_damaging(0.982) TCGA-Q9-A6FW-01 12 100733732 100733732 C T SCYL2 3'UTR 0.22 TCGA-Q9-A6FW-01 12 108912645 108912645 G C FICD Missense_Mutation p.S257T 0.27 deleterious(0) possibly_damaging(0.907) TCGA-Q9-A6FW-01 12 110182027 110182027 C T FAM222A Missense_Mutation p.R26C 0.13 deleterious(0) possibly_damaging(0.636) TCGA-Q9-A6FW-01 12 118682750 118682750 A C TAOK3 Missense_Mutation p.S47R 0.29 tolerated(0.21) benign(0.002) TCGA-Q9-A6FW-01 12 130184584 130184584 T G TMEM132D Missense_Mutation p.S247R 0.15 tolerated(0.28) benign(0.016) TCGA-Q9-A6FW-01 12 43771277 43771277 A C ADAMTS20 Missense_Mutation p.L1629R 0.16 tolerated(0.18) probably_damaging(0.934) TCGA-Q9-A6FW-01 12 43846085 43846085 G T ADAMTS20 Missense_Mutation p.Q691K 0.20 tolerated(0.1) benign(0.009) TCGA-Q9-A6FW-01 12 46752006 46752009 AAAC - SLC38A2 3'UTR 0.42 TCGA-Q9-A6FW-01 12 68054357 68054357 A T DYRK2 3'UTR 0.12 TCGA-Q9-A6FW-01 12 8672900 8672900 C T CLEC4D Missense_Mutation p.R155C 0.11 deleterious(0.01) benign(0.007) TCGA-Q9-A6FW-01 12 98941483 98941483 G T TMPO Missense_Mutation p.K295N 0.12 tolerated(0.17) probably_damaging(0.943) TCGA-Q9-A6FW-01 13 106124928 106124928 G T DAOA Nonsense_Mutation p.E59* 0.09 TCGA-Q9-A6FW-01 13 25168448 25168449 - TA RP11-556N21.1 RNA 0.09 TCGA-Q9-A6FW-01 13 33349630 33349631 - A PDS5B 3'UTR 0.14 TCGA-Q9-A6FW-01 13 41894959 41894959 G A NAA16 Missense_Mutation p.R134Q 0.12 deleterious(0.04) probably_damaging(0.938) TCGA-Q9-A6FW-01 13 46701725 46701725 C T LCP1 3'UTR 0.24 TCGA-Q9-A6FW-01 13 58302150 58302150 C A PCDH17 3'UTR 0.09 TCGA-Q9-A6FW-01 14 101348911 101348911 A C RTL1 Missense_Mutation p.S739A 0.12 deleterious(0) probably_damaging(0.987) TCGA-Q9-A6FW-01 14 20925203 20925203 T G APEX1 Missense_Mutation p.F165V 0.36 deleterious(0.02) benign(0.392) TCGA-Q9-A6FW-01 14 22090545 22090545 T C TRAV1-1 Missense_Mutation p.W51R 0.13 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 14 23993569 23993569 C T ZFHX2 Missense_Mutation p.R1861H 0.10 probably_damaging(1) TCGA-Q9-A6FW-01 14 24619510 24619510 A C RNF31 Silent p.A350A 0.21 TCGA-Q9-A6FW-01 14 36096451 36096451 T G RALGAPA1 Missense_Mutation p.Q1728H 0.20 deleterious(0.05) probably_damaging(0.997) TCGA-Q9-A6FW-01 14 51132289 51132289 G C SAV1 Missense_Mutation p.T48S 0.12 tolerated(0.36) benign(0.112) TCGA-Q9-A6FW-01 14 51223369 51223369 T A NIN Missense_Mutation p.K1460M 0.16 deleterious(0.01) possibly_damaging(0.808) TCGA-Q9-A6FW-01 14 55890916 55890916 C T TBPL2 Missense_Mutation p.V338M 0.13 deleterious(0) probably_damaging(0.998) TCGA-Q9-A6FW-01 14 60451884 60451884 T G LRRC9 Missense_Mutation p.L718R 0.24 deleterious(0) probably_damaging(0.978) TCGA-Q9-A6FW-01 14 63447960 63447960 A C KCNH5 Missense_Mutation p.I191S 0.21 tolerated(0.07) probably_damaging(0.994) TCGA-Q9-A6FW-01 14 70925692 70925692 C T ADAM21 Silent p.D492D 0.08 TCGA-Q9-A6FW-01 14 94712746 94712746 C G PPP4R4 Missense_Mutation p.A494G 0.09 deleterious(0.01) possibly_damaging(0.72) TCGA-Q9-A6FW-01 14 95921763 95921763 G A SYNE3 Missense_Mutation p.A363V 0.16 tolerated(0.33) benign(0.001) TCGA-Q9-A6FW-01 15 100516343 100516343 G A ADAMTS17 Missense_Mutation p.P1012S 0.10 tolerated(0.54) benign(0.243) TCGA-Q9-A6FW-01 15 28389296 28389296 G T HERC2 Missense_Mutation p.N3742K 0.17 benign(0.186) TCGA-Q9-A6FW-01 15 42375440 42375440 G A PLA2G4D Missense_Mutation p.H210Y 0.15 deleterious(0.01) possibly_damaging(0.685) TCGA-Q9-A6FW-01 15 48707779 48707779 C T FBN1 Missense_Mutation p.G2669S 0.13 possibly_damaging(0.746) TCGA-Q9-A6FW-01 15 54786896 54786896 T G UNC13C Missense_Mutation p.L1675R 0.11 deleterious_low_confidence(0.01) probably_damaging(0.914) TCGA-Q9-A6FW-01 15 54817755 54817755 T G UNC13C Silent p.S1822S 0.15 TCGA-Q9-A6FW-01 15 56946582 56946582 C T ZNF280D Splice_Site p.X726_splice 0.14 TCGA-Q9-A6FW-01 15 65489347 65489347 C T CILP Missense_Mutation p.G1093S 0.14 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 15 65621744 65621744 G A IGDCC3 Missense_Mutation p.P730L 0.08 tolerated_low_confidence(0.07) benign(0.167) TCGA-Q9-A6FW-01 15 79058876 79058876 C A ADAMTS7 Missense_Mutation p.G1126V 0.14 tolerated(0.18) benign(0.303) TCGA-Q9-A6FW-01 15 82575073 82575073 T G FAM154B Missense_Mutation p.F289L 0.15 deleterious(0) probably_damaging(0.951) TCGA-Q9-A6FW-01 15 86207955 86207955 A T AKAP13 Missense_Mutation p.D1658V 0.10 tolerated(0.07) benign(0.134) TCGA-Q9-A6FW-01 15 86697696 86697696 G A AGBL1 Missense_Mutation p.A54T 0.14 deleterious(0.05) probably_damaging(1) TCGA-Q9-A6FW-01 16 20327345 20327345 T C GP2 Silent p.Q481Q 0.39 TCGA-Q9-A6FW-01 16 47614247 47614247 G C PHKB Missense_Mutation p.G251A 0.08 deleterious(0) possibly_damaging(0.839) TCGA-Q9-A6FW-01 16 66420990 66420990 G A CDH5 Silent p.S163S 0.10 TCGA-Q9-A6FW-01 16 66776398 66776398 C A DYNC1LI2 Nonsense_Mutation p.E158* 0.34 TCGA-Q9-A6FW-01 16 67199459 67199459 G A HSF4 Missense_Mutation p.R53H 0.20 tolerated(0.05) probably_damaging(0.969) TCGA-Q9-A6FW-01 16 67327725 67327725 C T KCTD19 Missense_Mutation p.C647Y 0.19 deleterious(0.03) benign(0.001) TCGA-Q9-A6FW-01 16 67333573 67333573 C T KCTD19 Intron 0.21 TCGA-Q9-A6FW-01 16 70417132 70417132 G A ST3GAL2 Silent p.Y240Y 0.21 TCGA-Q9-A6FW-01 16 920018 920018 G A LMF1 Silent p.S427S 0.35 TCGA-Q9-A6FW-01 17 18221391 18221391 C T SMCR8 Missense_Mutation p.P763L 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-Q9-A6FW-01 17 19091507 19091507 T G SNORD3A RNA 0.14 TCGA-Q9-A6FW-01 17 22024731 22024731 T C MTRNR2L1 3'Flank 0.27 TCGA-Q9-A6FW-01 17 26370318 26370318 C T NLK Missense_Mutation p.P140L 0.07 deleterious(0.04) possibly_damaging(0.889) TCGA-Q9-A6FW-01 17 27959603 27959603 G T SSH2 Missense_Mutation p.P843Q 0.30 deleterious_low_confidence(0.02) possibly_damaging(0.563) TCGA-Q9-A6FW-01 17 3119721 3119721 C T OR1A1 Silent p.D269D 0.15 TCGA-Q9-A6FW-01 17 37199500 37199500 G C LRRC37A11P RNA 0.03 TCGA-Q9-A6FW-01 17 37381807 37381807 G A STAC2 5'UTR 0.10 TCGA-Q9-A6FW-01 17 40693105 40693105 A G NAGLU Missense_Mutation p.K301R 0.09 tolerated(0.22) benign(0.02) TCGA-Q9-A6FW-01 17 56082216 56082216 A T SRSF1 3'UTR 0.17 TCGA-Q9-A6FW-01 17 56082445 56082445 C T RP11-159D12.5 5'UTR 0.13 TCGA-Q9-A6FW-01 17 7359954 7359954 G A CHRNB1 Nonsense_Mutation p.W473* 0.12 TCGA-Q9-A6FW-01 17 7369066 7369066 C T ZBTB4 Missense_Mutation p.R352H 0.13 probably_damaging(0.954) TCGA-Q9-A6FW-01 17 76063908 76063908 G C TNRC6C Missense_Mutation p.E891D 0.18 tolerated(0.29) benign(0.071) TCGA-Q9-A6FW-01 17 8351903 8351903 G A NDEL1 Missense_Mutation p.R142K 0.22 tolerated(0.06) probably_damaging(0.978) TCGA-Q9-A6FW-01 18 22804397 22804397 C T ZNF521 Missense_Mutation p.R1162Q 0.36 tolerated(0.2) benign(0) TCGA-Q9-A6FW-01 18 47795943 47795943 C T MBD1 3'UTR 0.09 TCGA-Q9-A6FW-01 18 48604706 48604706 G T SMAD4 Nonsense_Mutation p.G510* 0.21 TCGA-Q9-A6FW-01 18 50976903 50976903 G A DCC Missense_Mutation p.G1088D 0.09 deleterious(0.01) benign(0.081) TCGA-Q9-A6FW-01 18 6986337 6986337 T G LAMA1 Missense_Mutation p.E1726D 0.47 deleterious(0.03) possibly_damaging(0.676) TCGA-Q9-A6FW-01 19 10446014 10446014 G A ICAM3 Missense_Mutation p.P222L 0.10 tolerated(0.21) benign(0.206) TCGA-Q9-A6FW-01 19 11833223 11833223 G A ZNF823 Nonsense_Mutation p.R376* 0.19 TCGA-Q9-A6FW-01 19 11978920 11978920 A C ZNF439 Silent p.R346R 0.16 TCGA-Q9-A6FW-01 19 12384613 12384613 G A ZNF44 Missense_Mutation p.R201C 0.08 tolerated(0.18) benign(0.276) TCGA-Q9-A6FW-01 19 16606868 16606868 C G CALR3 Missense_Mutation p.E25Q 0.18 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 19 20808378 20808378 C G ZNF626 Missense_Mutation p.R102T 0.07 tolerated(0.13) probably_damaging(0.977) TCGA-Q9-A6FW-01 19 21241317 21241317 C T ZNF430 3'UTR 0.40 TCGA-Q9-A6FW-01 19 2431820 2431820 G A LMNB2 Silent p.G557G 0.14 TCGA-Q9-A6FW-01 19 31038964 31038964 C T ZNF536 Missense_Mutation p.S813F 0.17 deleterious(0) possibly_damaging(0.502) TCGA-Q9-A6FW-01 19 31766001 31766001 C T TSHZ3 3'UTR 0.09 TCGA-Q9-A6FW-01 19 38382211 38382211 T G WDR87 Missense_Mutation p.Q1086H 0.11 benign(0.163) TCGA-Q9-A6FW-01 19 38652939 38652939 C T SIPA1L3 Silent p.A1236A 0.24 TCGA-Q9-A6FW-01 19 40947484 40947484 T C SERTAD3 Silent p.P168P 0.27 TCGA-Q9-A6FW-01 19 41522579 41522579 C T CYP2B6 Silent p.I441I 0.10 TCGA-Q9-A6FW-01 19 42126967 42126967 C T CEACAM4 Silent p.P192P 0.25 TCGA-Q9-A6FW-01 19 49414486 49414486 G A NUCB1 Missense_Mutation p.D153N 0.15 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 19 52795307 52795307 G A ZNF766 3'UTR 0.38 TCGA-Q9-A6FW-01 19 53367220 53367220 C A CTD-2331H12.5 5'Flank 0.18 TCGA-Q9-A6FW-01 19 55333153 55333153 A C KIR3DL1 Missense_Mutation p.E263D 0.16 tolerated(0.35) benign(0.001) TCGA-Q9-A6FW-01 19 57066743 57066743 C G ZFP28 Silent p.S863S 0.09 TCGA-Q9-A6FW-01 19 58331263 58331263 C T CTD-2583A14.10 5'UTR 0.10 TCGA-Q9-A6FW-01 19 58851055 58851055 G A ZSCAN22 3'UTR 0.30 TCGA-Q9-A6FW-01 19 8807881 8807881 G A ACTL9 Missense_Mutation p.R391C 0.40 tolerated(0.17) possibly_damaging(0.745) TCGA-Q9-A6FW-01 1 101440871 101440872 - T SLC30A7 3'UTR 0.15 TCGA-Q9-A6FW-01 1 114516033 114516034 CA - HIPK1 Frame_Shift_Del p.Q1178Vfs*65 0.25 TCGA-Q9-A6FW-01 1 118499808 118499808 C G WDR3 Missense_Mutation p.F857L 0.08 tolerated(1) benign(0.039) TCGA-Q9-A6FW-01 1 142699392 142699392 T C RP11-417J8.6 RNA 0.15 TCGA-Q9-A6FW-01 1 142713591 142713591 T G RP11-417J8.6 RNA 0.12 TCGA-Q9-A6FW-01 1 145562600 145562600 C T ANKRD35 Missense_Mutation p.P763L 0.11 tolerated(0.15) benign(0.027) TCGA-Q9-A6FW-01 1 147091476 147091476 C T BCL9 Silent p.H505H 0.17 TCGA-Q9-A6FW-01 1 152595447 152595447 G A LCE3A Missense_Mutation p.R45C 0.26 deleterious_low_confidence(0.04) unknown(0) TCGA-Q9-A6FW-01 1 15441059 15441059 C T KAZN Silent p.D752D 0.07 TCGA-Q9-A6FW-01 1 156617318 156617318 G A BCAN Missense_Mutation p.R162Q 0.14 deleterious(0) probably_damaging(0.997) TCGA-Q9-A6FW-01 1 157067666 157067666 C T ETV3L Missense_Mutation p.V201I 0.23 tolerated(0.66) benign(0) TCGA-Q9-A6FW-01 1 158609665 158609665 A G SPTA1 Missense_Mutation p.S1624P 0.25 tolerated(0.06) probably_damaging(1) TCGA-Q9-A6FW-01 1 159799784 159799784 G A SLAMF8 Missense_Mutation p.E57K 0.17 deleterious(0.01) possibly_damaging(0.447) TCGA-Q9-A6FW-01 1 160811182 160811182 C T CD244 Missense_Mutation p.G163D 0.19 tolerated(0.94) benign(0.006) TCGA-Q9-A6FW-01 1 168066003 168066003 A G GPR161 Missense_Mutation p.V301A 0.09 deleterious(0.04) benign(0.138) TCGA-Q9-A6FW-01 1 186368089 186368089 G A C1orf27 Missense_Mutation p.V305I 0.07 tolerated(0.49) benign(0.001) TCGA-Q9-A6FW-01 1 201063084 201063084 G A CACNA1S Silent p.Y108Y 0.14 TCGA-Q9-A6FW-01 1 214170813 214170813 G C PROX1 Missense_Mutation p.R312P 0.19 deleterious(0) possibly_damaging(0.858) TCGA-Q9-A6FW-01 1 214825215 214825215 G A CENPF Missense_Mutation p.D2716N 0.09 probably_damaging(0.998) TCGA-Q9-A6FW-01 1 22333904 22333904 C G CELA3A Missense_Mutation p.L180V 0.28 deleterious(0) possibly_damaging(0.882) TCGA-Q9-A6FW-01 1 224573970 224573970 G A WDR26 3'UTR 0.19 TCGA-Q9-A6FW-01 1 225230538 225230538 T G DNAH14 Missense_Mutation p.I516S 0.28 deleterious(0) benign(0) TCGA-Q9-A6FW-01 1 247752514 247752514 A C OR2G2 Missense_Mutation p.T285P 0.20 deleterious(0) probably_damaging(0.974) TCGA-Q9-A6FW-01 1 35496333 35496333 C A ZMYM6 Intron 0.43 TCGA-Q9-A6FW-01 1 37271877 37271877 C T GRIK3 Silent p.K714K 0.25 TCGA-Q9-A6FW-01 1 39784168 39784168 C G MACF1 Missense_Mutation p.R1281G 0.11 probably_damaging(0.916) TCGA-Q9-A6FW-01 1 46511680 46511680 A G PIK3R3 Missense_Mutation p.V366A 0.28 tolerated(0.45) benign(0.027) TCGA-Q9-A6FW-01 1 55145583 55145583 G A MROH7 Missense_Mutation p.G749D 0.16 deleterious(0.03) possibly_damaging(0.798) TCGA-Q9-A6FW-01 1 60139734 60139734 G T FGGY Nonsense_Mutation p.E505* 0.18 TCGA-Q9-A6FW-01 1 6649261 6649262 TG - ZBTB48 Frame_Shift_Del p.C686* 0.25 TCGA-Q9-A6FW-01 1 82457881 82457881 A T LPHN2 3'Flank 0.21 TCGA-Q9-A6FW-01 1 91180220 91180221 - A BARHL2 Frame_Shift_Ins p.S240Ffs*11 0.17 TCGA-Q9-A6FW-01 1 98164964 98164964 C A DPYD Missense_Mutation p.R208L 0.13 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 20 2127074 2127074 A G STK35 3'UTR 0.27 TCGA-Q9-A6FW-01 20 26061957 26061957 G A FAM182A RNA 0.18 TCGA-Q9-A6FW-01 20 30414509 30414509 C T MYLK2 Silent p.F358F 0.16 TCGA-Q9-A6FW-01 20 30584921 30584921 C T XKR7 Silent p.D467D 0.17 TCGA-Q9-A6FW-01 20 34776395 34776395 T G EPB41L1 Missense_Mutation p.F334V 0.19 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 20 3674201 3674201 A G SIGLEC1 Missense_Mutation p.I1134T 0.05 deleterious(0.01) possibly_damaging(0.474) TCGA-Q9-A6FW-01 20 49195805 49195805 G T PTPN1 Missense_Mutation p.R268L 0.24 deleterious(0) probably_damaging(0.947) TCGA-Q9-A6FW-01 20 57415196 57415196 G A RP4-806M20.3 5'Flank 0.06 TCGA-Q9-A6FW-01 20 60882434 60882434 G A ADRM1 Silent p.L183L 0.26 TCGA-Q9-A6FW-01 20 61143764 61143764 G C C20orf166 5'Flank 0.06 TCGA-Q9-A6FW-01 20 62374587 62374587 G T SLC2A4RG 3'UTR 0.19 TCGA-Q9-A6FW-01 21 31587909 31587909 T C CLDN8 Missense_Mutation p.E112G 0.09 tolerated(0.24) benign(0.122) TCGA-Q9-A6FW-01 21 33063176 33063176 C G SCAF4 Missense_Mutation p.V607L 0.08 benign(0.355) TCGA-Q9-A6FW-01 21 33717703 33717703 G A URB1 Silent p.H1350H 0.19 TCGA-Q9-A6FW-01 22 16279283 16279283 A C POTEH Missense_Mutation p.L314V 0.04 deleterious(0.02) probably_damaging(0.999) TCGA-Q9-A6FW-01 22 19422278 19422280 AAG - MRPL40 In_Frame_Del p.K55del 0.24 TCGA-Q9-A6FW-01 22 20131087 20131087 C T ZDHHC8 Missense_Mutation p.S645F 0.12 deleterious(0) probably_damaging(0.998) TCGA-Q9-A6FW-01 22 24133947 24133947 G A SMARCB1 Missense_Mutation p.G33E 0.19 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 22 26937283 26937283 C T TPST2 Missense_Mutation p.R105H 0.29 deleterious(0) possibly_damaging(0.811) TCGA-Q9-A6FW-01 22 31741150 31741150 A T PATZ1 Missense_Mutation p.S147T 0.19 deleterious_low_confidence(0) benign(0.397) TCGA-Q9-A6FW-01 22 40139790 40139790 A C ENTHD1 Missense_Mutation p.L573R 0.15 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 22 42474137 42474137 C T FAM109B 3'UTR 0.14 TCGA-Q9-A6FW-01 22 42607342 42607342 C T TCF20 Missense_Mutation p.D1324N 0.07 possibly_damaging(0.69) TCGA-Q9-A6FW-01 2 100006829 100006829 G C EIF5B Missense_Mutation p.A851P 0.17 possibly_damaging(0.885) TCGA-Q9-A6FW-01 2 116572395 116572395 T G DPP10 Missense_Mutation p.V580G 0.09 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 2 127950791 127950791 C T CYP27C1 Nonsense_Mutation p.W294* 0.26 TCGA-Q9-A6FW-01 2 144704183 144704183 T C GTDC1 3'UTR 0.18 TCGA-Q9-A6FW-01 2 155295209 155295209 G A GALNT13 Missense_Mutation p.G501R 0.11 deleterious(0) possibly_damaging(0.906) TCGA-Q9-A6FW-01 2 165972030 165972030 C T SCN3A Missense_Mutation p.R1150Q 0.11 tolerated(0.51) benign(0.01) TCGA-Q9-A6FW-01 2 166747426 166747426 A C TTC21B Missense_Mutation p.F1008C 0.20 deleterious(0) possibly_damaging(0.886) TCGA-Q9-A6FW-01 2 169020387 169020387 G A STK39 Missense_Mutation p.S145L 0.15 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 2 178769881 178769881 C T PDE11A Missense_Mutation p.A369T 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-Q9-A6FW-01 2 179544127 179544127 C G TTN Missense_Mutation p.K11227N 0.13 TCGA-Q9-A6FW-01 2 179659787 179659787 C A TTN Missense_Mutation p.Q369H 0.17 TCGA-Q9-A6FW-01 2 210559608 210559608 G A MAP2 Missense_Mutation p.R905Q 0.08 deleterious_low_confidence(0.03) probably_damaging(0.999) TCGA-Q9-A6FW-01 2 225338761 225338761 G A CUL3 3'UTR 0.12 TCGA-Q9-A6FW-01 2 238726336 238726336 A C RBM44 Silent p.S259S 0.11 TCGA-Q9-A6FW-01 2 241737163 241737163 C T KIF1A Missense_Mutation p.G3R 0.20 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-Q9-A6FW-01 2 241988508 241988508 G T SNED1 Missense_Mutation p.G525V 0.11 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 2 26569191 26569191 T C EPT1 Intron 0.29 TCGA-Q9-A6FW-01 2 27304980 27304980 C G EMILIN1 Missense_Mutation p.L181V 0.04 probably_damaging(0.996) TCGA-Q9-A6FW-01 2 27308661 27308661 A G EMILIN1 Silent p.V943V 0.12 TCGA-Q9-A6FW-01 2 29366762 29366762 C T CLIP4 Missense_Mutation p.T279M 0.25 tolerated(0.23) benign(0.007) TCGA-Q9-A6FW-01 2 44531249 44531249 C T SLC3A1 Intron 0.17 TCGA-Q9-A6FW-01 2 48822435 48822435 T C STON1 Silent p.T734T 0.14 TCGA-Q9-A6FW-01 2 6112468 6112468 A G DKFZP761K2322 Missense_Mutation p.I138V 0.45 benign(0.071) TCGA-Q9-A6FW-01 2 74154136 74154136 C T DGUOK Silent p.H33H 0.16 TCGA-Q9-A6FW-01 2 97853088 97853088 C G ANKRD36 Missense_Mutation p.S698C 0.18 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-Q9-A6FW-01 2 99802708 99802708 C A MRPL30 Silent p.G14G 0.18 TCGA-Q9-A6FW-01 3 10048911 10048911 T A AC022007.5 RNA 0.07 TCGA-Q9-A6FW-01 3 101312162 101312162 C T PCNP 3'UTR 0.13 TCGA-Q9-A6FW-01 3 118824023 118824023 A C IGSF11 Missense_Mutation p.L6R 0.29 deleterious_low_confidence(0.01) benign(0.012) TCGA-Q9-A6FW-01 3 12475550 12475550 C T PPARG Missense_Mutation p.T475M 0.48 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 3 124946572 124946572 T A ZNF148 3'UTR 0.09 TCGA-Q9-A6FW-01 3 130098739 130098739 A C COL6A5 Missense_Mutation p.E382D 0.18 tolerated(0.23) benign(0.012) TCGA-Q9-A6FW-01 3 138038346 138038346 C T NME9 Missense_Mutation p.G35S 0.19 tolerated(0.06) possibly_damaging(0.88) TCGA-Q9-A6FW-01 3 140285349 140285349 A C CLSTN2 3'UTR 0.29 TCGA-Q9-A6FW-01 3 142680169 142680169 A C PAQR9 3'UTR 0.13 TCGA-Q9-A6FW-01 3 154898237 154898237 C T MME Missense_Mutation p.R748W 0.17 deleterious(0) probably_damaging(0.993) TCGA-Q9-A6FW-01 3 183273292 183273292 G A KLHL6 Silent p.D50D 0.18 TCGA-Q9-A6FW-01 3 18390539 18390539 A C SATB1 3'UTR 0.14 TCGA-Q9-A6FW-01 3 195515498 195515498 C T MUC4 Missense_Mutation p.A985T 0.09 unknown(0) TCGA-Q9-A6FW-01 3 32280432 32280432 C T CMTM8 5'UTR 0.08 TCGA-Q9-A6FW-01 3 32737174 32737174 C G CNOT10 Silent p.R19R 0.12 TCGA-Q9-A6FW-01 3 38835375 38835377 CCC T SCN10A Frame_Shift_Del p.R42Kfs*27 0.15 TCGA-Q9-A6FW-01 3 41705161 41705161 G C ULK4 Missense_Mutation p.P1003R 0.09 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 3 46245394 46245394 G A CCR1 Silent p.H137H 0.22 TCGA-Q9-A6FW-01 3 52418830 52418830 C T DNAH1 Missense_Mutation p.S2784L 0.18 probably_damaging(0.962) TCGA-Q9-A6FW-01 3 62355550 62355550 A C FEZF2 3'UTR 0.22 TCGA-Q9-A6FW-01 3 9022354 9022354 G A SRGAP3 3'UTR 0.11 TCGA-Q9-A6FW-01 3 9970020 9970020 C T IL17RC Silent p.A374A 0.05 TCGA-Q9-A6FW-01 4 100540256 100540259 GTAA - MTTP Splice_Site p.X781_splice 0.13 TCGA-Q9-A6FW-01 4 147562756 147562756 A C POU4F2 3'UTR 0.17 TCGA-Q9-A6FW-01 4 153793677 153793677 G A ARFIP1 Silent p.K124K 0.05 TCGA-Q9-A6FW-01 4 156638421 156638421 T C GUCY1A3 Silent p.D561D 0.18 TCGA-Q9-A6FW-01 4 162402181 162402181 T A FSTL5 Missense_Mutation p.K533N 0.10 deleterious(0.01) probably_damaging(0.977) TCGA-Q9-A6FW-01 4 165961334 165961334 G A TRIM60 Missense_Mutation p.R37H 0.11 tolerated(0.55) benign(0.01) TCGA-Q9-A6FW-01 4 176594834 176594834 A G GPM6A Silent p.A128A 0.21 TCGA-Q9-A6FW-01 4 187197501 187197501 T C F11 Missense_Mutation p.F238L 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-Q9-A6FW-01 4 3318886 3318887 - GGG RGS12 In_Frame_Ins p.G331dup 0.22 TCGA-Q9-A6FW-01 4 47163405 47163405 A C GABRB1 Missense_Mutation p.K127T 0.20 deleterious(0) probably_damaging(0.997) TCGA-Q9-A6FW-01 4 83838912 83838912 A T THAP9 Missense_Mutation p.N516I 0.05 deleterious(0.05) benign(0.372) TCGA-Q9-A6FW-01 4 983911 983911 C T SLC26A1 Silent p.A272A 0.25 TCGA-Q9-A6FW-01 4 99355168 99355168 A G RAP1GDS1 Missense_Mutation p.N509D 0.36 deleterious(0) probably_damaging(0.967) TCGA-Q9-A6FW-01 5 110427949 110427949 A G WDR36 5'UTR 0.20 TCGA-Q9-A6FW-01 5 131630432 131630432 C A SLC22A4 Missense_Mutation p.F41L 0.16 deleterious(0) probably_damaging(0.998) TCGA-Q9-A6FW-01 5 141016116 141016118 ATC - HDAC3 In_Frame_Del p.M45del 0.17 TCGA-Q9-A6FW-01 5 145719156 145719156 C T POU4F3 Missense_Mutation p.R56C 0.17 deleterious(0) possibly_damaging(0.898) TCGA-Q9-A6FW-01 5 150031078 150031078 G T SYNPO 3'UTR 0.19 TCGA-Q9-A6FW-01 5 169097551 169097551 T G DOCK2 Missense_Mutation p.I58M 0.08 deleterious(0) possibly_damaging(0.471) TCGA-Q9-A6FW-01 5 173378899 173378899 A G CPEB4 Missense_Mutation p.K580E 0.07 deleterious(0) probably_damaging(0.953) TCGA-Q9-A6FW-01 5 43381990 43381990 T A CCL28 Missense_Mutation p.E119V 0.05 tolerated(0.24) benign(0.008) TCGA-Q9-A6FW-01 5 68695879 68695879 C T RAD17 Missense_Mutation p.R537W 0.23 deleterious(0.04) benign(0.149) TCGA-Q9-A6FW-01 6 111656701 111656701 A C REV3L Missense_Mutation p.F2551V 0.16 deleterious(0) probably_damaging(0.998) TCGA-Q9-A6FW-01 6 118887415 118887415 A C CEP85L Silent p.T102T 0.11 TCGA-Q9-A6FW-01 6 139564250 139564250 C T TXLNB Missense_Mutation p.A490T 0.11 tolerated(0.3) benign(0.025) TCGA-Q9-A6FW-01 6 147109545 147109545 G A ADGB Missense_Mutation p.V1446I 0.15 tolerated(0.48) benign(0.001) TCGA-Q9-A6FW-01 6 148711341 148711341 C T SASH1 Silent p.D76D 0.25 TCGA-Q9-A6FW-01 6 152679647 152679647 A G SYNE1 Missense_Mutation p.L3490P 0.16 possibly_damaging(0.766) TCGA-Q9-A6FW-01 6 160999713 160999713 C A LPA Missense_Mutation p.R1438M 0.10 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 6 168352864 168352864 G A MLLT4 Silent p.A1603A 0.35 TCGA-Q9-A6FW-01 6 26197097 26197097 C A HIST1H3D Missense_Mutation p.A128S 0.32 deleterious_low_confidence(0) benign(0.169) TCGA-Q9-A6FW-01 6 27835214 27835214 C T HIST1H1B Missense_Mutation p.G32S 0.13 tolerated(0.77) unknown(0) TCGA-Q9-A6FW-01 6 28501887 28501887 G A GPX5 Silent p.T203T 0.17 TCGA-Q9-A6FW-01 6 30071921 30071921 G A TRIM31 Missense_Mutation p.H328Y 0.20 tolerated(0.07) benign(0.042) TCGA-Q9-A6FW-01 6 32064950 32064950 C A TNXB Missense_Mutation p.R227L 0.14 probably_damaging(0.969) TCGA-Q9-A6FW-01 6 65622444 65622444 G T EYS Missense_Mutation p.N858K 0.14 tolerated(0.12) benign(0.025) TCGA-Q9-A6FW-01 6 69772889 69772889 C T BAI3 Silent p.T799T 0.14 TCGA-Q9-A6FW-01 6 74190469 74190469 C T MTO1 Nonsense_Mutation p.R401* 0.06 TCGA-Q9-A6FW-01 7 100685048 100685048 T G MUC17 Missense_Mutation p.S3451A 0.16 benign(0.076) TCGA-Q9-A6FW-01 7 103243886 103243886 C T RELN Silent p.P1066P 0.11 TCGA-Q9-A6FW-01 7 111509629 111509629 C G DOCK4 Splice_Site p.X703_splice 0.11 TCGA-Q9-A6FW-01 7 113517705 113517705 A G PPP1R3A 3'UTR 0.13 TCGA-Q9-A6FW-01 7 117864981 117864981 G C ANKRD7 Missense_Mutation p.A33P 0.15 deleterious(0) probably_damaging(0.982) TCGA-Q9-A6FW-01 7 121695040 121695040 A G PTPRZ1 Missense_Mutation p.N2143D 0.17 tolerated(0.05) benign(0.031) TCGA-Q9-A6FW-01 7 129350386 129350386 C G NRF1 Missense_Mutation p.P313R 0.11 deleterious(0) probably_damaging(0.999) TCGA-Q9-A6FW-01 7 131853149 131853149 G A PLXNA4 Silent p.Y1400Y 0.16 TCGA-Q9-A6FW-01 7 31917639 31917639 G A PDE1C Missense_Mutation p.R206W 0.41 deleterious(0) probably_damaging(0.962) TCGA-Q9-A6FW-01 7 64293635 64293635 A C ZNF138 3'Flank 0.20 TCGA-Q9-A6FW-01 7 74133241 74133241 A G GTF2I Silent p.E308E 0.21 TCGA-Q9-A6FW-01 7 81765972 81765972 G A CACNA2D1 Silent p.Y125Y 0.10 TCGA-Q9-A6FW-01 7 87370826 87370826 A C RUNDC3B Missense_Mutation p.K204T 0.15 deleterious(0.02) probably_damaging(0.919) TCGA-Q9-A6FW-01 7 99032748 99032748 G A ATP5J2-PTCD1 Missense_Mutation p.R89W 0.58 tolerated_low_confidence(0.12) benign(0.002) TCGA-Q9-A6FW-01 8 124518740 124518740 G A FBXO32 Silent p.D242D 0.18 TCGA-Q9-A6FW-01 8 133141448 133141448 G C KCNQ3 3'UTR 0.14 TCGA-Q9-A6FW-01 8 139601476 139601476 T C COL22A1 3'UTR 0.14 TCGA-Q9-A6FW-01 8 144941802 144941802 G A EPPK1 Missense_Mutation p.R1874C 0.28 benign(0.001) TCGA-Q9-A6FW-01 8 23560506 23560506 C T NKX2-6 Missense_Mutation p.G122S 0.31 tolerated(0.41) benign(0.003) TCGA-Q9-A6FW-01 8 3038642 3038642 C A CSMD1 Silent p.L1905L 0.24 TCGA-Q9-A6FW-01 8 37687410 37687410 G A GPR124 Missense_Mutation p.R199H 0.25 tolerated(0.14) benign(0.004) TCGA-Q9-A6FW-01 8 39466580 39466580 T G ADAM18 Missense_Mutation p.F70V 0.24 deleterious(0) probably_damaging(0.94) TCGA-Q9-A6FW-01 8 48614549 48614549 A G SPIDR Missense_Mutation p.Y650C 0.19 tolerated(0.07) benign(0.14) TCGA-Q9-A6FW-01 8 67062654 67062654 A C TRIM55 Missense_Mutation p.N313T 0.16 deleterious(0.03) benign(0.017) TCGA-Q9-A6FW-01 8 69243487 69243487 G A C8orf34 Silent p.S80S 0.32 TCGA-Q9-A6FW-01 8 74515978 74515978 G A STAU2 Nonsense_Mutation p.R338* 0.16 TCGA-Q9-A6FW-01 9 114411837 114411838 - A DNAJC25 Frame_Shift_Ins p.A201Sfs*16 0.31 TCGA-Q9-A6FW-01 9 125282234 125282234 T C OR1J4 Missense_Mutation p.V272A 0.37 tolerated_low_confidence(0.07) benign(0.007) TCGA-Q9-A6FW-01 9 133305924 133305924 G T HMCN2 Missense_Mutation p.M570I 0.33 tolerated(0.41) benign(0) TCGA-Q9-A6FW-01 9 133512919 133512919 A T FUBP3 3'UTR 0.05 TCGA-Q9-A6FW-01 9 135462883 135462883 G A BARHL1 Missense_Mutation p.A212T 0.10 deleterious(0) probably_damaging(1) TCGA-Q9-A6FW-01 9 27284831 27284831 C G EQTN Missense_Mutation p.D259H 0.41 deleterious(0) possibly_damaging(0.601) TCGA-Q9-A6FW-01 9 2844045 2844045 C A KIAA0020 Intron 0.08 TCGA-Q9-A6FW-01 9 72840670 72840672 TTT - MAMDC2 In_Frame_Del p.F640del 0.18 TCGA-Q9-A6FW-01 X 100614296 100614296 T C BTK Silent p.Q293Q 0.21 TCGA-Q9-A6FW-01 X 118223626 118223626 G A KIAA1210 Missense_Mutation p.R523W 0.07 deleterious(0.04) benign(0.001) TCGA-Q9-A6FW-01 X 153588526 153588526 C T FLNA Missense_Mutation p.G1213S 0.33 tolerated(0.26) benign(0.069) TCGA-Q9-A6FW-01 X 37301183 37301183 C T PRRG1 Intron 0.19 TCGA-Q9-A6FW-01 X 6451760 6451760 T C VCX3A 3'UTR 0.34 TCGA-Q9-A6FW-01 X 92965780 92965780 C T FAM133A 3'UTR 0.17 TCGA-R6-A6DN-01 10 115933960 115933960 G C C10orf118 5'UTR 0.59 TCGA-R6-A6DN-01 10 13838554 13838554 C T FRMD4A Missense_Mutation p.V81I 0.14 deleterious(0) possibly_damaging(0.7) TCGA-R6-A6DN-01 10 17275912 17275912 A C VIM Missense_Mutation p.E288D 0.60 deleterious(0.02) benign(0.128) TCGA-R6-A6DN-01 10 30653804 30653804 G T AL161651.1 3'Flank 0.16 TCGA-R6-A6DN-01 10 43623873 43623873 G A RET 3'UTR 0.30 TCGA-R6-A6DN-01 10 48416385 48416385 C T GDF2 Silent p.T103T 0.41 TCGA-R6-A6DN-01 10 50151422 50151422 G A WDFY4 Silent p.A2559A 0.30 TCGA-R6-A6DN-01 10 5499157 5499157 A T NET1 3'UTR 0.06 TCGA-R6-A6DN-01 10 7205219 7205219 C T SFMBT2 3'UTR 0.24 TCGA-R6-A6DN-01 10 8097786 8097786 A C GATA3 Missense_Mutation p.Q56H 0.65 tolerated(0.07) probably_damaging(0.993) TCGA-R6-A6DN-01 10 88728230 88728230 G A ADIRF 5'UTR 0.18 TCGA-R6-A6DN-01 11 101454162 101454162 G A TRPC6 Missense_Mutation p.R25C 0.53 deleterious_low_confidence(0) unknown(0) TCGA-R6-A6DN-01 11 103047022 103047022 G A DYNC2H1 Silent p.T1911T 0.63 TCGA-R6-A6DN-01 11 44095006 44095006 C T ACCS Missense_Mutation p.R120C 0.12 tolerated(0.08) benign(0.003) TCGA-R6-A6DN-01 11 49829227 49829227 C A RP11-707M1.1 Intron 0.17 TCGA-R6-A6DN-01 11 66999244 66999244 G A KDM2A Missense_Mutation p.R431Q 0.88 tolerated(0.54) benign(0.023) TCGA-R6-A6DN-01 11 67059125 67059125 G A ANKRD13D Missense_Mutation p.R150Q 0.88 tolerated(0.24) possibly_damaging(0.827) TCGA-R6-A6DN-01 11 72695220 72695220 G A FCHSD2 Silent p.H206H 0.19 TCGA-R6-A6DN-01 11 8752018 8752018 G A ST5 Silent p.G273G 0.83 TCGA-R6-A6DN-01 11 89224418 89224418 G A NOX4 5'UTR 0.71 TCGA-R6-A6DN-01 12 104709577 104709577 T A TXNRD1 Missense_Mutation p.N211K 0.17 deleterious(0) probably_damaging(1) TCGA-R6-A6DN-01 12 121098879 121098879 C T CABP1 Silent p.D315D 0.71 TCGA-R6-A6DN-01 12 40044041 40044041 C T C12orf40 Missense_Mutation p.R191C 0.16 tolerated(0.09) benign(0) TCGA-R6-A6DN-01 12 41353009 41353009 T C CNTN1 Missense_Mutation p.S593P 0.07 deleterious(0.01) possibly_damaging(0.817) TCGA-R6-A6DN-01 12 78606752 78606752 T G NAV3 3'Flank 0.88 TCGA-R6-A6DN-01 12 85695015 85695015 G A ALX1 Missense_Mutation p.C248Y 0.23 deleterious(0) possibly_damaging(0.592) TCGA-R6-A6DN-01 13 36246336 36246336 T G NBEA 3'UTR 0.82 TCGA-R6-A6DN-01 13 51594665 51594666 - T GUCY1B2 RNA 0.13 TCGA-R6-A6DN-01 14 106725307 106725307 G T IGHV3-23 Missense_Mutation p.S82Y 0.30 deleterious_low_confidence(0.01) benign(0.409) TCGA-R6-A6DN-01 14 47309842 47309842 T C MDGA2 3'UTR 0.55 TCGA-R6-A6DN-01 14 74433702 74433702 T C ENTPD5 Missense_Mutation p.N406D 0.33 tolerated(0.44) possibly_damaging(0.889) TCGA-R6-A6DN-01 14 75904636 75904636 C T JDP2 Nonsense_Mutation p.Q16* 0.25 TCGA-R6-A6DN-01 14 86094251 86094251 C A FLRT2 3'UTR 0.42 TCGA-R6-A6DN-01 15 21071315 21071315 C T POTEB2 Missense_Mutation p.R99H 0.40 tolerated(0.12) benign(0.049) TCGA-R6-A6DN-01 15 24925950 24925950 C A NPAP1 3'UTR 0.30 TCGA-R6-A6DN-01 15 25349906 25349906 C T SNORD116-30 5'Flank 0.76 TCGA-R6-A6DN-01 15 25422019 25422019 G T SNORD115-4 RNA 0.64 TCGA-R6-A6DN-01 15 43574111 43574111 C T TGM7 Missense_Mutation p.E428K 0.24 tolerated(0.37) benign(0.004) TCGA-R6-A6DN-01 16 19132177 19132177 C T ITPRIPL2 3'UTR 0.21 TCGA-R6-A6DN-01 16 19132482 19132482 G T ITPRIPL2 3'UTR 0.40 TCGA-R6-A6DN-01 16 19132483 19132483 A T ITPRIPL2 3'UTR 0.43 TCGA-R6-A6DN-01 16 30391324 30391324 G A SEPT1 Missense_Mutation p.H202Y 0.50 benign(0.04) TCGA-R6-A6DN-01 16 31447681 31447681 C T ZNF843 Missense_Mutation p.V164I 0.41 tolerated_low_confidence(0.25) benign(0.208) TCGA-R6-A6DN-01 16 56531752 56531752 A G BBS2 Missense_Mutation p.I567T 0.77 deleterious(0) benign(0.237) TCGA-R6-A6DN-01 16 69400729 69400729 G A TERF2 Missense_Mutation p.P399S 0.55 tolerated(0.52) benign(0.011) TCGA-R6-A6DN-01 16 75263905 75263905 C T BCAR1 Missense_Mutation p.R752Q 0.30 tolerated(0.26) probably_damaging(0.935) TCGA-R6-A6DN-01 16 76574659 76574659 C A CNTNAP4 Silent p.V1065V 0.21 TCGA-R6-A6DN-01 17 18251744 18251744 C T SHMT1 Missense_Mutation p.G85R 0.42 deleterious(0.01) probably_damaging(1) TCGA-R6-A6DN-01 17 41243015 41243015 G A BRCA1 Silent p.S1377S 0.22 TCGA-R6-A6DN-01 17 42165905 42165905 C T HDAC5 Silent p.T484T 0.48 TCGA-R6-A6DN-01 17 48538652 48538652 A G ACSF2 Missense_Mutation p.D125G 0.88 deleterious(0) probably_damaging(1) TCGA-R6-A6DN-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.89 deleterious(0) probably_damaging(1) TCGA-R6-A6DN-01 18 60527681 60527681 G A PHLPP1 Missense_Mutation p.R638H 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-R6-A6DN-01 18 77917939 77917939 C T PARD6G Silent p.P282P 0.50 TCGA-R6-A6DN-01 19 10385492 10385492 G A ICAM1 Missense_Mutation p.R40Q 0.26 tolerated(0.32) benign(0.145) TCGA-R6-A6DN-01 19 1578371 1578372 - CTC MBD3 In_Frame_Ins p.E281dup 0.39 TCGA-R6-A6DN-01 19 19261545 19261545 C T MEF2BNB-MEF2B 5'UTR 0.42 TCGA-R6-A6DN-01 19 22941476 22941476 A C ZNF99 Missense_Mutation p.L412R 0.33 deleterious(0.01) probably_damaging(1) TCGA-R6-A6DN-01 19 31768451 31768451 G T TSHZ3 Missense_Mutation p.L750I 0.18 tolerated(0.11) probably_damaging(0.996) TCGA-R6-A6DN-01 19 3810816 3810816 C T ZFR2 Missense_Mutation p.V789M 0.30 deleterious(0) probably_damaging(0.931) TCGA-R6-A6DN-01 19 43430018 43430018 T C PSG7 Missense_Mutation p.I384V 0.05 tolerated(1) benign(0.019) TCGA-R6-A6DN-01 19 46274872 46274872 C T DMPK Silent p.R528R 0.20 TCGA-R6-A6DN-01 19 54687561 54687561 C T MBOAT7 Silent p.L112L 0.33 TCGA-R6-A6DN-01 19 6411866 6411866 G A KHSRP 3'Flank 0.32 TCGA-R6-A6DN-01 19 9070673 9070673 T A MUC16 Silent p.G5591G 0.19 TCGA-R6-A6DN-01 1 104160215 104160215 A T AMY2A Silent p.G51G 0.65 TCGA-R6-A6DN-01 1 113244030 113244030 A C RHOC 3'UTR 0.45 TCGA-R6-A6DN-01 1 156552116 156552116 G A TTC24 Nonsense_Mutation p.W267* 0.54 TCGA-R6-A6DN-01 1 160322740 160322740 G A NCSTN Missense_Mutation p.V354M 0.29 deleterious(0.04) possibly_damaging(0.594) TCGA-R6-A6DN-01 1 161641441 161641441 T C FCGR2B Splice_Site p.X131_splice 0.38 TCGA-R6-A6DN-01 1 248224767 248224767 A C OR2L3 Silent p.R262R 0.88 TCGA-R6-A6DN-01 1 6521717 6521717 G A TNFRSF25 Missense_Mutation p.A353V 0.40 tolerated(0.4) benign(0.08) TCGA-R6-A6DN-01 20 21689953 21689953 G A PAX1 Missense_Mutation p.G385S 0.47 tolerated_low_confidence(0.13) benign(0.096) TCGA-R6-A6DN-01 20 33515093 33515093 G A ACSS2 3'UTR 0.50 TCGA-R6-A6DN-01 20 34330056 34330056 A G RBM39 5'Flank 0.28 TCGA-R6-A6DN-01 20 47991256 47991256 C T KCNB1 Missense_Mutation p.E281K 0.19 deleterious(0.04) probably_damaging(0.999) TCGA-R6-A6DN-01 20 62172297 62172297 G C SRMS Silent p.R447R 0.50 TCGA-R6-A6DN-01 22 26224867 26224867 G A MYO18B Missense_Mutation p.A971T 0.74 tolerated(0.41) benign(0.008) TCGA-R6-A6DN-01 22 32754182 32754182 G A RFPL3 Missense_Mutation p.V42I 0.67 tolerated(0.68) benign(0.004) TCGA-R6-A6DN-01 22 39497275 39497275 G A APOBEC3H Missense_Mutation p.E62K 0.20 tolerated(1) benign(0.006) TCGA-R6-A6DN-01 22 45798264 45798264 T C SMC1B Missense_Mutation p.K268R 0.05 deleterious(0.01) probably_damaging(0.976) TCGA-R6-A6DN-01 22 46859657 46859657 C T CELSR1 Missense_Mutation p.R1377H 0.57 tolerated(0.56) probably_damaging(0.915) TCGA-R6-A6DN-01 2 118866018 118866018 G A INSIG2 3'UTR 0.32 TCGA-R6-A6DN-01 2 128350416 128350416 G A MYO7B Missense_Mutation p.M680I 0.10 deleterious(0) probably_damaging(0.996) TCGA-R6-A6DN-01 2 141093256 141093256 C A LRP1B Missense_Mutation p.G4015V 0.23 probably_damaging(0.953) TCGA-R6-A6DN-01 2 141093257 141093257 C T LRP1B Missense_Mutation p.G4015S 0.25 possibly_damaging(0.855) TCGA-R6-A6DN-01 2 169814554 169814554 T C ABCB11 Missense_Mutation p.M755V 0.60 tolerated(0.38) benign(0.019) TCGA-R6-A6DN-01 2 179462692 179462692 C A TTN Missense_Mutation p.A19069S 0.26 TCGA-R6-A6DN-01 2 217280990 217280990 C G SMARCAL1 Silent p.T274T 0.31 TCGA-R6-A6DN-01 2 220043663 220043663 C T FAM134A Missense_Mutation p.L101F 0.24 deleterious(0.01) benign(0.019) TCGA-R6-A6DN-01 2 48925917 48925917 G A LHCGR Nonsense_Mutation p.Q235* 0.50 TCGA-R6-A6DN-01 2 63816130 63816135 CTGAGG - MDH1 5'Flank 0.13 TCGA-R6-A6DN-01 2 80875615 80875615 T - CTNNA2 3'UTR 0.33 TCGA-R6-A6DN-01 2 84785000 84785000 A C DNAH6 Missense_Mutation p.S582R 0.38 deleterious(0.04) benign(0.09) TCGA-R6-A6DN-01 2 97302702 97302702 G C KANSL3 Silent p.T57T 0.70 TCGA-R6-A6DN-01 2 97866239 97866239 A T ANKRD36 Missense_Mutation p.K945M 0.13 tolerated_low_confidence(0.1) possibly_damaging(0.781) TCGA-R6-A6DN-01 3 11078575 11078575 G A SLC6A1 Missense_Mutation p.E575K 0.86 tolerated(0.62) benign(0.002) TCGA-R6-A6DN-01 3 113327292 113327292 T C SIDT1 Silent p.G543G 0.16 TCGA-R6-A6DN-01 3 126180803 126180803 G A ZXDC Silent p.L568L 0.13 TCGA-R6-A6DN-01 3 127396666 127396666 A G ABTB1 Missense_Mutation p.M337V 0.33 tolerated(0.69) benign(0.001) TCGA-R6-A6DN-01 3 146307513 146307513 T C PLSCR5 Missense_Mutation p.N235S 0.79 deleterious(0.05) probably_damaging(0.999) TCGA-R6-A6DN-01 3 173322865 173322865 T A NLGN1 Nonsense_Mutation p.Y159* 0.42 TCGA-R6-A6DN-01 3 69242853 69242853 C A FRMD4B Nonsense_Mutation p.E554* 0.17 TCGA-R6-A6DN-01 3 98620070 98620070 C T DCBLD2 Missense_Mutation p.R34H 0.40 tolerated_low_confidence(0.17) benign(0) TCGA-R6-A6DN-01 4 135122092 135122092 C A PABPC4L Missense_Mutation p.R86M 0.71 deleterious(0) benign(0.41) TCGA-R6-A6DN-01 4 177136878 177136878 G T ASB5 Missense_Mutation p.A288D 0.38 deleterious(0.03) possibly_damaging(0.606) TCGA-R6-A6DN-01 4 2214842 2214842 T A POLN Missense_Mutation p.I49L 0.80 tolerated(0.44) benign(0.002) TCGA-R6-A6DN-01 4 23831151 23831151 C T PPARGC1A Missense_Mutation p.G163S 0.84 deleterious(0.01) probably_damaging(1) TCGA-R6-A6DN-01 4 6302454 6302454 G A WFS1 Missense_Mutation p.G311D 0.09 deleterious(0) probably_damaging(0.999) TCGA-R6-A6DN-01 4 89199444 89199444 C T PPM1K Missense_Mutation p.A98T 0.36 tolerated(0.17) benign(0.194) TCGA-R6-A6DN-01 5 13737516 13737516 C T DNAH5 Missense_Mutation p.R3767H 0.22 possibly_damaging(0.812) TCGA-R6-A6DN-01 5 140744933 140744933 G A PCDHGA5 Missense_Mutation p.E346K 0.50 deleterious_low_confidence(0) possibly_damaging(0.738) TCGA-R6-A6DN-01 5 145428710 145428710 G A SH3RF2 Silent p.R408R 0.29 TCGA-R6-A6DN-01 5 153190785 153190785 A C GRIA1 Nonstop_Mutation p.*917Yext*52 0.39 TCGA-R6-A6DN-01 5 161582216 161582216 C T GABRG2 3'UTR 0.43 TCGA-R6-A6DN-01 5 172113202 172113202 G A NEURL1B Silent p.T442T 0.30 TCGA-R6-A6DN-01 5 37224379 37224380 - T C5orf42 Frame_Shift_Ins p.A853Sfs*31 0.37 TCGA-R6-A6DN-01 5 45262335 45262335 G A HCN1 Silent p.S787S 0.33 TCGA-R6-A6DN-01 5 68396658 68396658 A G SLC30A5 Silent p.L36L 0.16 TCGA-R6-A6DN-01 6 136932475 136932475 G A MAP3K5 Silent p.D822D 0.58 TCGA-R6-A6DN-01 6 167550105 167550105 T C CCR6 Silent p.F129F 0.38 TCGA-R6-A6DN-01 6 25762254 25762254 G A SLC17A4 Missense_Mutation p.V22M 0.63 tolerated(0.73) benign(0.001) TCGA-R6-A6DN-01 6 26045794 26045794 C T HIST1H3C Silent p.I52I 0.55 TCGA-R6-A6DN-01 6 31680164 31680164 G A LY6G6E Missense_Mutation p.P111L 0.33 tolerated(0.64) benign(0) TCGA-R6-A6DN-01 6 76640790 76640790 G A IMPG1 Missense_Mutation p.A708V 0.38 tolerated(0.05) benign(0.039) TCGA-R6-A6DN-01 6 80626118 80626118 A T ELOVL4 3'UTR 0.64 TCGA-R6-A6DN-01 6 84284746 84284746 G A SNAP91 Missense_Mutation p.P809S 0.62 tolerated(0.33) probably_damaging(0.99) TCGA-R6-A6DN-01 6 93965557 93965557 A G EPHA7 Missense_Mutation p.Y791H 0.81 deleterious(0) probably_damaging(0.981) TCGA-R6-A6DN-01 6 93965558 93965558 G A EPHA7 Silent p.V790V 0.81 TCGA-R6-A6DN-01 7 100490407 100490407 C T ACHE Silent p.S367S 0.16 TCGA-R6-A6DN-01 7 101840007 101840007 G A CUX1 Missense_Mutation p.G450E 0.12 tolerated(0.34) unknown(0) TCGA-R6-A6DN-01 7 117235062 117235062 A - CFTR Frame_Shift_Del p.K857Rfs*3 0.12 TCGA-R6-A6DN-01 7 121678904 121678904 A C PTPRZ1 Missense_Mutation p.E1821D 0.73 tolerated(0.06) benign(0.171) TCGA-R6-A6DN-01 7 153584680 153584680 A C DPP6 5'UTR 0.12 TCGA-R6-A6DN-01 7 38670935 38670935 G A AMPH Missense_Mutation p.T6M 0.74 deleterious(0) possibly_damaging(0.863) TCGA-R6-A6DN-01 7 43601434 43601434 G A HECW1 Missense_Mutation p.R1577Q 0.54 deleterious(0) probably_damaging(0.965) TCGA-R6-A6DN-01 7 44179994 44179994 C T MYL7 Missense_Mutation p.A76T 0.10 tolerated(0.15) benign(0.006) TCGA-R6-A6DN-01 7 72727162 72727162 C T TRIM50 Missense_Mutation p.V407M 0.33 deleterious(0.01) probably_damaging(0.966) TCGA-R6-A6DN-01 7 94925443 94925443 C A PPP1R9A 3'Flank 0.80 TCGA-R6-A6DN-01 8 22106032 22106033 - A POLR3D Frame_Shift_Ins p.M176Nfs*15 0.24 TCGA-R6-A6DN-01 8 2975919 2975919 A T CSMD1 Splice_Site p.X2144_splice 0.31 TCGA-R6-A6DN-01 8 72755971 72755971 G A MSC Missense_Mutation p.T148M 0.26 deleterious(0) probably_damaging(0.999) TCGA-R6-A6DN-01 8 95892506 95892506 A G CCNE2 3'UTR 0.28 TCGA-R6-A6DN-01 X 77912927 77912927 G T ZCCHC5 Missense_Mutation p.Q331K 0.78 tolerated(0.24) benign(0.018) TCGA-R6-A6DN-01 X 83351266 83351266 C T RPS6KA6 Missense_Mutation p.R636H 0.35 deleterious(0.01) benign(0.277) TCGA-R6-A6DQ-01 10 128934239 128934239 G A FAM196A 3'UTR 0.09 TCGA-R6-A6DQ-01 10 16870956 16870956 C T CUBN Missense_Mutation p.E3538K 0.10 deleterious(0.03) probably_damaging(0.959) TCGA-R6-A6DQ-01 10 43678922 43678922 T C CSGALNACT2 Missense_Mutation p.F521L 0.42 tolerated(0.06) benign(0.015) TCGA-R6-A6DQ-01 10 48235982 48235982 G A AGAP9 Nonsense_Mutation p.W250* 0.21 TCGA-R6-A6DQ-01 10 50083134 50083134 G T WDFY4 Nonsense_Mutation p.E2317* 0.13 TCGA-R6-A6DQ-01 10 81142395 81142395 G - ZCCHC24 3'UTR 0.18 TCGA-R6-A6DQ-01 10 83635583 83635583 C T NRG3 Missense_Mutation p.R163W 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-R6-A6DQ-01 11 119005654 119005654 T G HINFP 3'UTR 0.06 TCGA-R6-A6DQ-01 11 120856618 120856618 C T GRIK4 Silent p.S840S 0.47 TCGA-R6-A6DQ-01 11 31810724 31810724 A G PAX6 3'UTR 0.30 TCGA-R6-A6DQ-01 11 64359361 64359361 C T SLC22A12 Silent p.A111A 0.50 TCGA-R6-A6DQ-01 11 66328750 66328750 G A CTSF 3'Flank 0.32 TCGA-R6-A6DQ-01 11 6648208 6648208 C T DCHS1 Missense_Mutation p.R2021H 0.32 deleterious(0.02) possibly_damaging(0.818) TCGA-R6-A6DQ-01 11 92577542 92577542 G A FAT3 Missense_Mutation p.R3670Q 0.22 possibly_damaging(0.567) TCGA-R6-A6DQ-01 12 108145191 108145191 C A PRDM4 Splice_Site p.X376_splice 0.12 TCGA-R6-A6DQ-01 12 53218041 53218041 G T KRT79 Missense_Mutation p.Q321K 0.54 deleterious(0.02) benign(0.159) TCGA-R6-A6DQ-01 12 55422741 55422741 G A NEUROD4 3'UTR 0.37 TCGA-R6-A6DQ-01 12 7175811 7175811 C T C1S Missense_Mutation p.P416L 0.20 tolerated(0.12) benign(0.01) TCGA-R6-A6DQ-01 12 99640199 99640199 T C ANKS1B Missense_Mutation p.S734G 0.12 deleterious(0) benign(0.129) TCGA-R6-A6DQ-01 13 109540766 109540766 A G MYO16 Missense_Mutation p.R512G 0.18 deleterious(0) possibly_damaging(0.756) TCGA-R6-A6DQ-01 13 25848273 25848273 G A MTMR6 Missense_Mutation p.T26I 0.39 tolerated(0.38) benign(0.003) TCGA-R6-A6DQ-01 14 20611972 20611972 G T OR4N5 Silent p.L26L 0.25 TCGA-R6-A6DQ-01 14 55647457 55647457 C T DLGAP5 Missense_Mutation p.R207Q 0.12 deleterious(0.01) possibly_damaging(0.904) TCGA-R6-A6DQ-01 14 81743273 81743273 C G STON2 Missense_Mutation p.R794S 0.26 deleterious(0) probably_damaging(0.999) TCGA-R6-A6DQ-01 14 95033574 95033574 G A SERPINA4 Missense_Mutation p.R306Q 0.19 tolerated(1) benign(0.005) TCGA-R6-A6DQ-01 15 74560730 74560730 G A CCDC33 Silent p.L159L 0.09 TCGA-R6-A6DQ-01 16 1453325 1453325 G A UNKL Missense_Mutation p.T103M 0.33 deleterious(0) probably_damaging(0.974) TCGA-R6-A6DQ-01 16 18433270 18433270 G A NPIPA8 5'Flank 0.11 TCGA-R6-A6DQ-01 16 2093676 2093676 C T NTHL1 Missense_Mutation p.G201S 0.23 tolerated(0.08) benign(0.15) TCGA-R6-A6DQ-01 16 28367951 28367951 C T NPIPB6 Intron 0.11 TCGA-R6-A6DQ-01 16 4164627 4164627 C T ADCY9 Missense_Mutation p.G273R 0.27 tolerated(0.23) benign(0.003) TCGA-R6-A6DQ-01 16 48125058 48125058 G A ABCC12 Silent p.S1086S 0.32 TCGA-R6-A6DQ-01 16 56669815 56669815 G A MT1M 3'Flank 0.33 TCGA-R6-A6DQ-01 16 58200582 58200582 G A CSNK2A2 Missense_Mutation p.R245C 0.40 deleterious(0) probably_damaging(0.985) TCGA-R6-A6DQ-01 17 32597294 32597294 G T CCL7 5'UTR 0.36 TCGA-R6-A6DQ-01 17 33884643 33884643 G A SLFN14 Silent p.L147L 0.24 TCGA-R6-A6DQ-01 17 37865579 37865579 A G ERBB2 Missense_Mutation p.K150E 0.38 tolerated(0.35) possibly_damaging(0.605) TCGA-R6-A6DQ-01 17 6538418 6538418 T - KIAA0753 Frame_Shift_Del p.P3Qfs*11 0.11 TCGA-R6-A6DQ-01 17 7576873 7576873 C A TP53 Nonsense_Mutation p.G325* 0.30 TCGA-R6-A6DQ-01 18 21124978 21124978 C T NPC1 Missense_Mutation p.M631I 0.12 deleterious(0) benign(0.049) TCGA-R6-A6DQ-01 18 34833808 34833808 A C CELF4 Missense_Mutation p.L476R 0.21 deleterious(0) probably_damaging(0.99) TCGA-R6-A6DQ-01 18 6928533 6928533 G T LINC00668 RNA 0.27 TCGA-R6-A6DQ-01 19 24270092 24270092 T C ZNF254 5'UTR 0.28 TCGA-R6-A6DQ-01 19 39370089 39370089 C T SIRT2 Silent p.E333E 0.41 TCGA-R6-A6DQ-01 19 41898857 41898857 G A EXOSC5 Silent p.Y59Y 0.18 TCGA-R6-A6DQ-01 19 42509909 42509909 G A GRIK5 Silent p.L743L 0.53 TCGA-R6-A6DQ-01 19 49170681 49170681 G T NTN5 Intron 0.23 TCGA-R6-A6DQ-01 19 51363105 51363106 TC - KLK3 Intron 0.52 TCGA-R6-A6DQ-01 19 53300911 53300911 G A ZNF28 3'UTR 0.55 TCGA-R6-A6DQ-01 19 57175612 57175612 C T ZNF835 Missense_Mutation p.A319T 0.18 tolerated(0.06) benign(0.128) TCGA-R6-A6DQ-01 19 58369950 58369950 G A CTD-2583A14.10 Nonsense_Mutation p.W57* 0.11 TCGA-R6-A6DQ-01 19 855780 855780 G A ELANE Missense_Mutation p.A195T 0.33 deleterious(0.01) probably_damaging(0.995) TCGA-R6-A6DQ-01 19 9922195 9922195 T C FBXL12 Missense_Mutation p.T120A 0.32 tolerated(0.78) benign(0) TCGA-R6-A6DQ-01 1 100598446 100598447 - T SASS6 5'UTR 0.21 TCGA-R6-A6DQ-01 1 12918902 12918902 C T PRAMEF2 Missense_Mutation p.A13V 0.21 tolerated(0.07) benign(0.028) TCGA-R6-A6DQ-01 1 176659433 176659433 A C PAPPA2 Missense_Mutation p.E766D 0.28 tolerated(0.11) benign(0.09) TCGA-R6-A6DQ-01 1 183520015 183520015 G A SMG7 Missense_Mutation p.R1042K 0.13 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-R6-A6DQ-01 1 203668687 203668687 T C ATP2B4 Missense_Mutation p.L164S 0.20 deleterious(0.01) probably_damaging(0.96) TCGA-R6-A6DQ-01 1 214171287 214171287 C G PROX1 Missense_Mutation p.S470C 0.13 tolerated(0.06) possibly_damaging(0.87) TCGA-R6-A6DQ-01 1 214171467 214171467 C G PROX1 Missense_Mutation p.S530C 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-R6-A6DQ-01 1 245008478 245008478 G T COX20 3'Flank 0.12 TCGA-R6-A6DQ-01 1 27057668 27057668 C T ARID1A Missense_Mutation p.P459L 0.20 benign(0.001) TCGA-R6-A6DQ-01 20 3677836 3677836 A G SIGLEC1 Missense_Mutation p.V759A 0.33 deleterious(0.01) benign(0.217) TCGA-R6-A6DQ-01 20 3869972 3869972 G A PANK2 Silent p.S75S 0.14 TCGA-R6-A6DQ-01 20 42788954 42788954 G A JPH2 Missense_Mutation p.P158L 0.24 deleterious(0.04) possibly_damaging(0.676) TCGA-R6-A6DQ-01 20 43851851 43851851 G A SEMG2 Silent p.K526K 0.18 TCGA-R6-A6DQ-01 20 4708915 4708915 A G PRND 3'UTR 0.29 TCGA-R6-A6DQ-01 20 54573109 54573109 A - CBLN4 3'UTR 0.35 TCGA-R6-A6DQ-01 20 629463 629463 C T SRXN1 Silent p.A103A 0.38 TCGA-R6-A6DQ-01 22 18613616 18613616 A G TUBA8 Missense_Mutation p.I355V 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.888) TCGA-R6-A6DQ-01 22 19956208 19956208 C T COMT Silent p.D255D 0.16 TCGA-R6-A6DQ-01 22 23406102 23406102 C T RTDR1 Missense_Mutation p.A211T 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-R6-A6DQ-01 2 135206251 135206251 G A MGAT5 Missense_Mutation p.A687T 0.07 tolerated(0.17) benign(0.011) TCGA-R6-A6DQ-01 2 136433026 136433026 C T R3HDM1 Silent p.V724V 0.28 TCGA-R6-A6DQ-01 2 141459770 141459770 C A LRP1B Missense_Mutation p.G2081V 0.19 probably_damaging(0.953) TCGA-R6-A6DQ-01 2 207175899 207175899 G A ZDBF2 Missense_Mutation p.R2216Q 0.32 tolerated(0.72) benign(0.01) TCGA-R6-A6DQ-01 2 228420192 228420192 T A AGFG1 3'Flank 0.11 TCGA-R6-A6DQ-01 2 238285682 238285682 G A COL6A3 Missense_Mutation p.R935W 0.23 probably_damaging(1) TCGA-R6-A6DQ-01 3 129253952 129253952 C A RHO 3'UTR 0.11 TCGA-R6-A6DQ-01 3 147657860 147657860 C T RP11-71N10.1 RNA 0.12 TCGA-R6-A6DQ-01 3 44776031 44776031 C A ZNF501 Missense_Mutation p.H40N 0.18 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-R6-A6DQ-01 3 45943257 45943257 G A CCR9 Missense_Mutation p.R326Q 0.25 tolerated(0.74) benign(0.044) TCGA-R6-A6DQ-01 3 47932648 47932648 A G MAP4 Intron 0.21 TCGA-R6-A6DQ-01 3 86990609 86990609 T A VGLL3 3'UTR 0.21 TCGA-R6-A6DQ-01 4 155278439 155278439 G A DCHS2 Silent p.V244V 0.24 TCGA-R6-A6DQ-01 4 55133523 55133523 C T PDGFRA Missense_Mutation p.T276M 0.41 tolerated(0.24) benign(0.125) TCGA-R6-A6DQ-01 4 5830268 5830268 G A CRMP1 Missense_Mutation p.P584L 0.35 deleterious(0.03) benign(0.051) TCGA-R6-A6DQ-01 5 120022785 120022786 CT A PRR16 3'UTR 0.20 TCGA-R6-A6DQ-01 5 121188111 121188111 C T FTMT Silent p.D151D 0.45 TCGA-R6-A6DQ-01 5 140188574 140188574 C T PCDHA4 Missense_Mutation p.S601L 0.19 deleterious_low_confidence(0) benign(0.413) TCGA-R6-A6DQ-01 5 140229376 140229376 G A PCDHA9 Silent p.S432S 0.14 TCGA-R6-A6DQ-01 5 140626811 140626811 C T PCDHB15 Silent p.N555N 0.27 TCGA-R6-A6DQ-01 5 140869747 140869747 C T PCDHGC5 Missense_Mutation p.R314C 0.30 deleterious(0.02) benign(0.333) TCGA-R6-A6DQ-01 5 35954308 35954308 G A UGT3A1 Missense_Mutation p.T523I 0.28 deleterious(0.03) benign(0.284) TCGA-R6-A6DQ-01 5 54405875 54405875 C T GZMA Silent p.C218C 0.20 TCGA-R6-A6DQ-01 6 111583554 111583554 G A KIAA1919 Missense_Mutation p.R41H 0.55 deleterious(0) possibly_damaging(0.88) TCGA-R6-A6DQ-01 6 114379236 114379236 C T HS3ST5 Missense_Mutation p.A76T 0.26 tolerated(0.43) benign(0.005) TCGA-R6-A6DQ-01 6 122768322 122768322 C T SERINC1 Nonsense_Mutation p.W313* 0.12 TCGA-R6-A6DQ-01 6 126176402 126176402 G A NCOA7 Intron 0.21 TCGA-R6-A6DQ-01 6 159660605 159660605 C T FNDC1 Nonsense_Mutation p.R1413* 0.35 TCGA-R6-A6DQ-01 6 31974483 31974483 C A AL645922.1 Intron 0.16 TCGA-R6-A6DQ-01 6 35477490 35477490 T C TULP1 Silent p.P213P 0.46 TCGA-R6-A6DQ-01 6 39846025 39846034 AAGTTCCGGA - DAAM2 Frame_Shift_Del p.F451Nfs*6 0.50 TCGA-R6-A6DQ-01 7 106964908 106964908 G A COG5 Missense_Mutation p.S393F 0.30 deleterious(0.02) benign(0.443) TCGA-R6-A6DQ-01 7 43506045 43506045 G T HECW1 Splice_Site p.X931_splice 0.24 TCGA-R6-A6DQ-01 7 48312196 48312196 T C ABCA13 Missense_Mutation p.I978T 0.18 benign(0.045) TCGA-R6-A6DQ-01 7 4874577 4874577 C T RADIL Silent p.A359A 0.22 TCGA-R6-A6DQ-01 7 72745765 72745765 G A FKBP6 Missense_Mutation p.V192M 0.09 tolerated(0.08) benign(0.01) TCGA-R6-A6DQ-01 7 73118551 73118551 C A STX1A Missense_Mutation p.M131I 0.11 deleterious(0.01) possibly_damaging(0.742) TCGA-R6-A6DQ-01 7 93515824 93515824 T A TFPI2 3'UTR 0.32 TCGA-R6-A6DQ-01 8 105001531 105001531 A T RIMS2 Splice_Site p.X976_splice 0.54 TCGA-R6-A6DQ-01 8 11177336 11177336 C A MTMR9 Missense_Mutation p.P492Q 0.07 tolerated(1) benign(0) TCGA-R6-A6DQ-01 8 144642814 144642814 G A GSDMD Missense_Mutation p.R151H 0.42 deleterious(0) probably_damaging(0.998) TCGA-R6-A6DQ-01 8 17087362 17087362 G A CNOT7 3'UTR 0.07 TCGA-R6-A6DQ-01 8 32621347 32621347 G A NRG1 Silent p.S455S 0.10 TCGA-R6-A6DQ-01 8 41557028 41557028 A T ANK1 Missense_Mutation p.S875T 0.15 tolerated(0.53) benign(0.082) TCGA-R6-A6DQ-01 8 51465644 51465644 G A SNTG1 Missense_Mutation p.V239I 0.09 tolerated(0.2) benign(0.005) TCGA-R6-A6DQ-01 8 52321517 52321517 C A PXDNL Missense_Mutation p.Q889H 0.56 tolerated(0.13) benign(0.139) TCGA-R6-A6DQ-01 9 123738997 123738997 C T C5 Missense_Mutation p.G1282D 0.11 deleterious(0.01) possibly_damaging(0.901) TCGA-R6-A6DQ-01 9 133510070 133510070 G A FUBP3 Silent p.P509P 0.40 TCGA-R6-A6DQ-01 9 71098786 71098786 A G PGM5 Missense_Mutation p.D434G 0.05 deleterious(0) probably_damaging(0.995) TCGA-R6-A6DQ-01 X 141290892 141290892 A C MAGEC2 Silent p.P294P 0.42 TCGA-R6-A6DQ-01 X 14862007 14862007 G C FANCB Missense_Mutation p.F754L 0.34 tolerated(0.21) benign(0.027) TCGA-R6-A6DQ-01 X 68060496 68060496 G A EFNB1 Silent p.%3D 0.34 TCGA-R6-A6DQ-01 X 92965615 92965615 T A FAM133A 3'UTR 0.54 TCGA-R6-A6KZ-01 10 102987416 102987416 C T LBX1 Missense_Mutation p.A153T 0.16 deleterious(0.04) probably_damaging(1) TCGA-R6-A6KZ-01 10 106937852 106937852 G A SORCS3 Missense_Mutation p.D644N 0.16 tolerated(0.34) benign(0) TCGA-R6-A6KZ-01 10 117486857 117486857 C G ATRNL1 Missense_Mutation p.P1299A 0.41 tolerated(0.79) benign(0.001) TCGA-R6-A6KZ-01 10 118432515 118432515 A T HSPA12A 3'UTR 0.33 TCGA-R6-A6KZ-01 10 19820137 19820137 T G MALRD1 Missense_Mutation p.F1158V 0.31 deleterious(0) probably_damaging(0.998) TCGA-R6-A6KZ-01 10 50177272 50177273 - GGGA WDFY4 Frame_Shift_Ins p.S2918Rfs*118 0.14 TCGA-R6-A6KZ-01 10 75673062 75673062 G A PLAU Missense_Mutation p.R128Q 0.30 tolerated(0.96) benign(0.001) TCGA-R6-A6KZ-01 10 88428409 88428409 C T LDB3 Intron 0.32 TCGA-R6-A6KZ-01 11 101374848 101374848 A G TRPC6 Silent p.A284A 0.28 TCGA-R6-A6KZ-01 11 124252988 124252988 G C OR8B2 Missense_Mutation p.N84K 0.18 deleterious_low_confidence(0.02) benign(0.151) TCGA-R6-A6KZ-01 11 124738938 124738938 C T ROBO3 Missense_Mutation p.A134V 0.25 deleterious(0.01) possibly_damaging(0.876) TCGA-R6-A6KZ-01 11 18723788 18723788 A G TMEM86A 3'UTR 0.19 TCGA-R6-A6KZ-01 11 2356846 2356846 C T CD81-AS1 Intron 0.24 TCGA-R6-A6KZ-01 11 55432790 55432790 A C OR4C6 Missense_Mutation p.S50R 0.39 deleterious_low_confidence(0) possibly_damaging(0.807) TCGA-R6-A6KZ-01 11 56185440 56185440 T A OR5R1 Missense_Mutation p.N90I 0.38 deleterious(0) possibly_damaging(0.83) TCGA-R6-A6KZ-01 11 61563401 61563401 C T FEN1 Silent p.L190L 0.25 TCGA-R6-A6KZ-01 11 62382386 62382386 C T ROM1 3'UTR 0.25 TCGA-R6-A6KZ-01 11 64564480 64564480 C T MAP4K2 Missense_Mutation p.G461R 0.26 deleterious(0.04) probably_damaging(0.995) TCGA-R6-A6KZ-01 11 6867411 6867411 T C OR10A5 Silent p.S166S 0.26 TCGA-R6-A6KZ-01 11 76063648 76063648 A G PRKRIR Silent p.P182P 0.21 TCGA-R6-A6KZ-01 11 83169186 83169186 A T DLG2 3'UTR 0.19 TCGA-R6-A6KZ-01 11 83170738 83170738 A C DLG2 3'UTR 0.24 TCGA-R6-A6KZ-01 11 95712485 95712485 C T MAML2 Missense_Mutation p.S1033N 0.30 unknown(0) TCGA-R6-A6KZ-01 12 111099082 111099082 C T HVCN1 Missense_Mutation p.E65K 0.53 deleterious_low_confidence(0.02) benign(0.154) TCGA-R6-A6KZ-01 12 11461446 11461446 A G PRB4 Silent p.P157P 0.39 TCGA-R6-A6KZ-01 12 124499318 124499318 C T ZNF664 3'UTR 0.41 TCGA-R6-A6KZ-01 12 12814459 12814459 A C GPR19 Missense_Mutation p.S308R 0.50 deleterious(0.01) possibly_damaging(0.793) TCGA-R6-A6KZ-01 12 130521297 130521297 G A RP11-474D1.3 RNA 0.24 TCGA-R6-A6KZ-01 12 2224508 2224508 C T CACNA1C Silent p.I56I 0.55 TCGA-R6-A6KZ-01 12 29812910 29812910 C A TMTC1 Intron 0.26 TCGA-R6-A6KZ-01 12 44902166 44902166 G T NELL2 3'Flank 0.25 TCGA-R6-A6KZ-01 12 68688952 68688952 T G MDM1 3'UTR 0.39 TCGA-R6-A6KZ-01 12 69252831 69252831 C A CPM Missense_Mutation p.D321Y 0.10 deleterious(0) probably_damaging(0.921) TCGA-R6-A6KZ-01 12 72355427 72355427 G A TPH2 Intron 0.12 TCGA-R6-A6KZ-01 12 7527976 7527976 G A CD163L1 Missense_Mutation p.H968Y 0.38 deleterious(0.04) possibly_damaging(0.773) TCGA-R6-A6KZ-01 12 78604330 78604330 T G NAV3 3'UTR 0.38 TCGA-R6-A6KZ-01 13 113140382 113140382 G A TUBGCP3 Silent p.N883N 0.50 TCGA-R6-A6KZ-01 13 37012260 37012260 C A CCNA1 Missense_Mutation p.L201I 0.25 tolerated(0.23) benign(0.002) TCGA-R6-A6KZ-01 13 37271039 37271039 A G SERTM1 3'UTR 0.38 TCGA-R6-A6KZ-01 14 21992981 21992981 C T SALL2 Missense_Mutation p.R294Q 0.12 tolerated(0.23) probably_damaging(0.99) TCGA-R6-A6KZ-01 14 23240531 23240531 G A OXA1L Missense_Mutation p.R446Q 0.05 tolerated(1) benign(0.009) TCGA-R6-A6KZ-01 14 50732194 50732194 G A L2HGDH Silent p.L360L 0.37 TCGA-R6-A6KZ-01 14 86091876 86091876 T C FLRT2 3'UTR 0.37 TCGA-R6-A6KZ-01 15 24923216 24923216 A G NPAP1 Silent p.Q734Q 0.28 TCGA-R6-A6KZ-01 15 25959047 25959047 C T ATP10A Silent p.A706A 0.18 TCGA-R6-A6KZ-01 15 39547041 39547041 T A C15orf54 3'UTR 0.19 TCGA-R6-A6KZ-01 15 43678414 43678414 G A TUBGCP4 Silent p.L300L 0.15 TCGA-R6-A6KZ-01 15 79589408 79589408 C T ANKRD34C 3'UTR 0.14 TCGA-R6-A6KZ-01 15 84651856 84651856 C T ADAMTSL3 Missense_Mutation p.S1159F 0.20 tolerated(0.11) benign(0.008) TCGA-R6-A6KZ-01 15 99434636 99434636 G A IGF1R Silent p.A241A 0.14 TCGA-R6-A6KZ-01 16 11876195 11876195 C T ZC3H7A Missense_Mutation p.E6K 0.11 tolerated(0.46) benign(0.011) TCGA-R6-A6KZ-01 16 20976007 20976007 C T DNAH3 Missense_Mutation p.D3067N 0.50 deleterious(0) probably_damaging(0.971) TCGA-R6-A6KZ-01 16 24196805 24196805 G T PRKCB Missense_Mutation p.D547Y 0.25 deleterious(0) probably_damaging(0.972) TCGA-R6-A6KZ-01 16 28549402 28549402 C T NUPR1 Missense_Mutation p.E81K 0.31 deleterious(0.01) possibly_damaging(0.502) TCGA-R6-A6KZ-01 16 31485023 31485023 A G TGFB1I1 Silent p.S50S 0.29 TCGA-R6-A6KZ-01 16 32265856 32265856 A T TP53TG3D Intron 0.12 TCGA-R6-A6KZ-01 16 32265857 32265857 C T TP53TG3D Intron 0.12 TCGA-R6-A6KZ-01 16 56693025 56693025 C T MT1F Silent p.A45A 0.21 TCGA-R6-A6KZ-01 16 68224878 68224878 G A NFATC3 Missense_Mutation p.C769Y 0.09 tolerated_low_confidence(0.71) possibly_damaging(0.781) TCGA-R6-A6KZ-01 17 10348418 10348418 C T MYH4 Missense_Mutation p.A1781T 0.53 deleterious(0.03) probably_damaging(1) TCGA-R6-A6KZ-01 17 10356581 10356581 T G MYH4 Missense_Mutation p.K1000T 0.44 tolerated(0.06) benign(0.045) TCGA-R6-A6KZ-01 17 10428384 10428384 T G MYH2 Splice_Site p.X1555_splice 0.47 TCGA-R6-A6KZ-01 17 29702048 29702048 T A NF1 3'UTR 0.07 TCGA-R6-A6KZ-01 17 37576108 37576108 T G MED1 Missense_Mutation p.S387R 0.37 tolerated(0.06) probably_damaging(0.959) TCGA-R6-A6KZ-01 17 37881021 37881021 C T ERBB2 Missense_Mutation p.R784C 0.20 deleterious(0) probably_damaging(0.998) TCGA-R6-A6KZ-01 17 39406475 39406475 T G KRTAP9-4 3'UTR 0.28 TCGA-R6-A6KZ-01 17 44107395 44107395 G C KANSL1 3'UTR 0.17 TCGA-R6-A6KZ-01 17 46507510 46507510 G A SKAP1 5'UTR 0.24 TCGA-R6-A6KZ-01 17 46628133 46628133 C T HOXB3 Missense_Mutation p.E287K 0.38 deleterious(0.01) benign(0.251) TCGA-R6-A6KZ-01 17 57288842 57288842 A C SMG8 Missense_Mutation p.K477T 0.19 deleterious(0.01) probably_damaging(0.977) TCGA-R6-A6KZ-01 17 60072604 60072604 G T MED13 Missense_Mutation p.P697Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-R6-A6KZ-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.53 deleterious(0) probably_damaging(1) TCGA-R6-A6KZ-01 17 7752830 7752830 G A KDM6B Missense_Mutation p.R1075Q 0.57 benign(0.361) TCGA-R6-A6KZ-01 18 14851601 14851601 C T ANKRD30B Silent p.L1101L 0.11 TCGA-R6-A6KZ-01 18 48603032 48603032 C T SMAD4 Nonsense_Mutation p.R445* 0.53 TCGA-R6-A6KZ-01 19 11917123 11917123 C T ZNF491 Nonsense_Mutation p.R119* 0.60 TCGA-R6-A6KZ-01 19 12089019 12089019 T G ZNF763 Missense_Mutation p.F97V 0.52 tolerated(0.5) possibly_damaging(0.765) TCGA-R6-A6KZ-01 19 20045515 20045515 A C ZNF93 Missense_Mutation p.K584T 0.51 deleterious(0.04) possibly_damaging(0.746) TCGA-R6-A6KZ-01 19 22155194 22155194 T A ZNF208 Missense_Mutation p.K881I 0.43 tolerated(0.12) unknown(0) TCGA-R6-A6KZ-01 19 24010127 24010127 G A RPSAP58 Nonsense_Mutation p.W55* 0.24 TCGA-R6-A6KZ-01 19 29698831 29698831 G A UQCRFS1 Missense_Mutation p.A150V 0.24 deleterious(0) benign(0.064) TCGA-R6-A6KZ-01 19 35800917 35800917 C T MAG Missense_Mutation p.R458W 0.46 deleterious(0) possibly_damaging(0.893) TCGA-R6-A6KZ-01 19 39516071 39516071 C T FBXO27 Missense_Mutation p.V278M 0.41 deleterious(0.01) possibly_damaging(0.781) TCGA-R6-A6KZ-01 19 43699178 43699178 G C PSG4 Missense_Mutation p.I319M 0.19 tolerated(0.23) benign(0.007) TCGA-R6-A6KZ-01 19 43699189 43699189 A C PSG4 Missense_Mutation p.Y316D 0.20 tolerated(0.2) possibly_damaging(0.788) TCGA-R6-A6KZ-01 19 47181788 47181788 A T PRKD2 Missense_Mutation p.W735R 0.26 deleterious(0) probably_damaging(0.999) TCGA-R6-A6KZ-01 19 50374931 50374931 C T AKT1S1 Missense_Mutation p.C187Y 0.11 tolerated(1) benign(0) TCGA-R6-A6KZ-01 19 53270131 53270131 C T ZNF600 Missense_Mutation p.R293H 0.32 tolerated(0.38) benign(0.001) TCGA-R6-A6KZ-01 19 53644629 53644629 A C ZNF347 Silent p.P485P 0.26 TCGA-R6-A6KZ-01 19 53741076 53741076 G T ZNF677 Missense_Mutation p.Q302K 0.27 tolerated(0.06) benign(0.025) TCGA-R6-A6KZ-01 19 54973785 54973785 G A LENG9 Missense_Mutation p.P331S 0.16 tolerated(0.07) benign(0.301) TCGA-R6-A6KZ-01 19 57061491 57061491 C A ZFP28 Missense_Mutation p.A248D 0.40 tolerated(0.13) possibly_damaging(0.679) TCGA-R6-A6KZ-01 19 7592758 7592758 A G MCOLN1 Missense_Mutation p.N230S 0.53 tolerated(0.46) probably_damaging(0.968) TCGA-R6-A6KZ-01 19 9449168 9449168 A G ZNF559 Splice_Site 0.43 TCGA-R6-A6KZ-01 1 103343652 103343652 C A COL11A1 Missense_Mutation p.D1782Y 0.37 unknown(0) TCGA-R6-A6KZ-01 1 103380335 103380335 T C COL11A1 Silent p.E1283E 0.20 TCGA-R6-A6KZ-01 1 11855311 11855311 G A MTHFR Missense_Mutation p.A292V 0.10 tolerated(0.06) benign(0.077) TCGA-R6-A6KZ-01 1 151749017 151749017 A G TDRKH Silent p.A314A 0.25 TCGA-R6-A6KZ-01 1 158299215 158299215 C A CD1B Silent p.L277L 0.33 TCGA-R6-A6KZ-01 1 158326360 158326360 A G CD1E Missense_Mutation p.D326G 0.19 tolerated(0.51) benign(0.031) TCGA-R6-A6KZ-01 1 158612245 158612245 G C SPTA1 Missense_Mutation p.L1565V 0.27 deleterious(0) probably_damaging(0.999) TCGA-R6-A6KZ-01 1 159805039 159805039 G A SLAMF8 Missense_Mutation p.D283N 0.25 tolerated_low_confidence(0.15) benign(0.015) TCGA-R6-A6KZ-01 1 160784259 160784259 C T LY9 Silent p.V260V 0.33 TCGA-R6-A6KZ-01 1 169677719 169677719 T G SELL Missense_Mutation p.N117T 0.31 deleterious(0.01) probably_damaging(0.955) TCGA-R6-A6KZ-01 1 185891577 185891577 T G HMCN1 Missense_Mutation p.F323V 0.15 possibly_damaging(0.879) TCGA-R6-A6KZ-01 1 190068039 190068039 G A BRINP3 Silent p.S470S 0.25 TCGA-R6-A6KZ-01 1 203472138 203472138 G A OPTC Splice_Site p.X276_splice 0.19 TCGA-R6-A6KZ-01 1 248436861 248436861 C T OR2T33 Missense_Mutation p.G86R 0.44 deleterious(0.01) possibly_damaging(0.88) TCGA-R6-A6KZ-01 1 27942113 27942113 C T FGR Missense_Mutation p.G284S 0.32 tolerated(0.06) possibly_damaging(0.635) TCGA-R6-A6KZ-01 1 2938096 2938096 G A ACTRT2 5'UTR 0.42 TCGA-R6-A6KZ-01 1 35223091 35223091 A G GJB5 Missense_Mutation p.N54D 0.21 tolerated(0.06) benign(0.288) TCGA-R6-A6KZ-01 1 47078649 47078649 C T MOB3C Silent p.P167P 0.19 TCGA-R6-A6KZ-01 1 51755785 51755785 T G TTC39A Missense_Mutation p.E466A 0.23 deleterious(0.02) probably_damaging(0.944) TCGA-R6-A6KZ-01 1 89573945 89573945 G A GBP2 Silent p.F563F 0.20 TCGA-R6-A6KZ-01 20 35431337 35431337 C T SOGA1 Silent p.L1087L 0.25 TCGA-R6-A6KZ-01 20 44505670 44505670 C T ZSWIM3 Missense_Mutation p.S158F 0.16 tolerated(0.18) benign(0.041) TCGA-R6-A6KZ-01 20 60705584 60705584 A G LSM14B Splice_Site p.X225_splice 0.10 TCGA-R6-A6KZ-01 21 11039362 11039362 T G BAGE2 RNA 0.10 TCGA-R6-A6KZ-01 22 24718716 24718716 G A SPECC1L Missense_Mutation p.V590M 0.50 deleterious(0.01) probably_damaging(0.945) TCGA-R6-A6KZ-01 22 32108594 32108594 G A PRR14L Missense_Mutation p.P1744L 0.40 deleterious(0) probably_damaging(0.998) TCGA-R6-A6KZ-01 22 37906323 37906323 C A CARD10 Nonsense_Mutation p.E269* 0.27 TCGA-R6-A6KZ-01 2 101549428 101549428 C T NPAS2 Missense_Mutation p.L80F 0.18 deleterious(0.02) probably_damaging(0.941) TCGA-R6-A6KZ-01 2 125547505 125547505 T G CNTNAP5 Missense_Mutation p.F926V 0.08 deleterious(0) probably_damaging(0.999) TCGA-R6-A6KZ-01 2 152392295 152392295 T G NEB Missense_Mutation p.E7074D 0.44 probably_damaging(0.975) TCGA-R6-A6KZ-01 2 170115563 170115563 G A LRP2 Missense_Mutation p.R829W 0.24 probably_damaging(0.988) TCGA-R6-A6KZ-01 2 170361081 170361081 G C BBS5 Missense_Mutation p.V339L 0.37 deleterious(0.04) possibly_damaging(0.685) TCGA-R6-A6KZ-01 2 174820856 174820856 C G SP3 Missense_Mutation p.Q128H 0.21 tolerated(0.54) probably_damaging(0.965) TCGA-R6-A6KZ-01 2 176948260 176948260 G A EVX2 Missense_Mutation p.T82M 0.20 deleterious(0.01) benign(0.179) TCGA-R6-A6KZ-01 2 1795391 1795391 G T MYT1L 3'UTR 0.29 TCGA-R6-A6KZ-01 2 179605401 179605401 T C TTN Missense_Mutation p.S4187G 0.22 TCGA-R6-A6KZ-01 2 189864069 189864069 T C COL3A1 Missense_Mutation p.L694P 0.24 unknown(0) TCGA-R6-A6KZ-01 2 220162692 220162692 C T PTPRN Missense_Mutation p.R601Q 0.14 deleterious(0.02) possibly_damaging(0.873) TCGA-R6-A6KZ-01 2 228243936 228243936 C A TM4SF20 Missense_Mutation p.V17F 0.07 tolerated(0.05) benign(0.037) TCGA-R6-A6KZ-01 2 28804940 28804940 C T PLB1 Silent p.H524H 0.17 TCGA-R6-A6KZ-01 2 30987153 30987153 C A CAPN13 Missense_Mutation p.D182Y 0.39 deleterious(0.05) benign(0.048) TCGA-R6-A6KZ-01 2 63283497 63283497 C T OTX1 3'UTR 0.21 TCGA-R6-A6KZ-01 2 72356929 72356929 A C CYP26B1 3'UTR 0.40 TCGA-R6-A6KZ-01 3 10326652 10326652 G A GHRL 3'Flank 0.47 TCGA-R6-A6KZ-01 3 112337841 112337841 G T CCDC80 Missense_Mutation p.L716I 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-R6-A6KZ-01 3 147128873 147128873 C T ZIC1 Missense_Mutation p.T325M 0.29 deleterious(0) probably_damaging(0.999) TCGA-R6-A6KZ-01 3 150570302 150570302 T C CLRN1-AS1 RNA 0.26 TCGA-R6-A6KZ-01 3 157160233 157160233 T G PTX3 Missense_Mutation p.L204R 0.41 deleterious(0) probably_damaging(0.999) TCGA-R6-A6KZ-01 3 160395971 160395971 G A ARL14 3'UTR 0.14 TCGA-R6-A6KZ-01 3 164714372 164714372 A C SI Missense_Mutation p.L1548R 0.31 deleterious(0) probably_damaging(1) TCGA-R6-A6KZ-01 3 178936096 178936096 G C PIK3CA Missense_Mutation p.Q546H 0.10 tolerated(0.06) possibly_damaging(0.679) TCGA-R6-A6KZ-01 3 179137219 179137219 T G GNB4 Missense_Mutation p.K57N 0.30 deleterious(0) possibly_damaging(0.811) TCGA-R6-A6KZ-01 3 183756275 183756275 T C HTR3D Missense_Mutation p.V333A 0.18 tolerated(0.08) possibly_damaging(0.593) TCGA-R6-A6KZ-01 3 184033385 184033385 G A EIF4G1 5'UTR 0.17 TCGA-R6-A6KZ-01 3 23934428 23934428 T G NKIRAS1 3'UTR 0.45 TCGA-R6-A6KZ-01 3 386284 386284 A C CHL1 Missense_Mutation p.K247T 0.41 tolerated(0.45) probably_damaging(0.925) TCGA-R6-A6KZ-01 3 38651390 38651390 T G SCN5A Missense_Mutation p.T257P 0.30 deleterious(0) probably_damaging(0.999) TCGA-R6-A6KZ-01 3 45943274 45943274 C A CCR9 Missense_Mutation p.L332M 0.36 tolerated(0.16) possibly_damaging(0.474) TCGA-R6-A6KZ-01 3 53910032 53910032 C T ACTR8 Missense_Mutation p.G285E 0.27 deleterious(0) probably_damaging(0.998) TCGA-R6-A6KZ-01 3 71247109 71247109 A C FOXP1 Silent p.V97V 0.28 TCGA-R6-A6KZ-01 3 93813066 93813066 G C NSUN3 Missense_Mutation p.L183F 0.14 tolerated(0.1) benign(0.076) TCGA-R6-A6KZ-01 3 97124070 97124070 T C EPHA6 Silent p.A561A 0.16 TCGA-R6-A6KZ-01 4 114279017 114279017 C A ANK2 Missense_Mutation p.D3081E 0.62 probably_damaging(0.999) TCGA-R6-A6KZ-01 4 144134913 144134913 G A USP38 Missense_Mutation p.R595Q 0.42 tolerated(0.71) benign(0.001) TCGA-R6-A6KZ-01 4 183651467 183651467 C T TENM3 Silent p.D900D 0.36 TCGA-R6-A6KZ-01 4 39408705 39408705 C T KLB Silent p.L46L 0.35 TCGA-R6-A6KZ-01 4 5664869 5664869 G A EVC2 Silent p.S370S 0.55 TCGA-R6-A6KZ-01 4 68459027 68459027 C T STAP1 Missense_Mutation p.T260I 0.42 deleterious(0) probably_damaging(0.995) TCGA-R6-A6KZ-01 5 109025794 109025794 C T MAN2A1 5'UTR 0.37 TCGA-R6-A6KZ-01 5 113698686 113698686 G A KCNN2 Missense_Mutation p.E72K 0.15 deleterious_low_confidence(0.02) possibly_damaging(0.692) TCGA-R6-A6KZ-01 5 11411748 11411748 G T CTNND2 Silent p.I113I 0.17 TCGA-R6-A6KZ-01 5 152873587 152873587 T C GRIA1 Missense_Mutation p.I71T 0.29 tolerated(0.41) possibly_damaging(0.525) TCGA-R6-A6KZ-01 5 154396400 154396400 T G KIF4B Missense_Mutation p.L994R 0.29 deleterious(0) probably_damaging(0.972) TCGA-R6-A6KZ-01 5 168199825 168199825 G A SLIT3 Missense_Mutation p.R474C 0.27 deleterious(0) probably_damaging(0.998) TCGA-R6-A6KZ-01 5 170239137 170239137 G A GABRP Missense_Mutation p.G400S 0.17 tolerated(0.76) benign(0.001) TCGA-R6-A6KZ-01 5 174869940 174869940 G A DRD1 Missense_Mutation p.R55W 0.31 deleterious(0) probably_damaging(1) TCGA-R6-A6KZ-01 5 178140243 178140243 T G ZNF354A Missense_Mutation p.K212N 0.30 deleterious(0) possibly_damaging(0.887) TCGA-R6-A6KZ-01 5 31983574 31983574 T G PDZD2 Missense_Mutation p.F264V 0.38 tolerated(0.14) benign(0.231) TCGA-R6-A6KZ-01 5 37138838 37138838 C T C5orf42 Missense_Mutation p.A2872T 0.29 tolerated(0.05) benign(0.409) TCGA-R6-A6KZ-01 5 421402 421402 G A AHRR Intron 0.08 TCGA-R6-A6KZ-01 5 45396616 45396616 G A HCN1 Missense_Mutation p.S403L 0.23 deleterious(0) benign(0.14) TCGA-R6-A6KZ-01 5 52385875 52385875 G T ITGA2 Missense_Mutation p.V1150F 0.13 deleterious(0.05) possibly_damaging(0.844) TCGA-R6-A6KZ-01 5 66084601 66084601 G A MAST4 Silent p.A207A 0.47 TCGA-R6-A6KZ-01 6 152652864 152652864 C G SYNE1 Missense_Mutation p.S4319T 0.31 benign(0.11) TCGA-R6-A6KZ-01 6 157522154 157522154 C T ARID1B Nonsense_Mutation p.Q1476* 0.17 TCGA-R6-A6KZ-01 6 26056307 26056307 T C HIST1H1C Missense_Mutation p.K117R 0.65 tolerated(0.1) unknown(0) TCGA-R6-A6KZ-01 6 27834859 27834859 T C HIST1H1B Missense_Mutation p.K150R 0.55 tolerated(0.07) unknown(0) TCGA-R6-A6KZ-01 6 31708323 31708323 C T MSH5 Missense_Mutation p.P27L 0.48 tolerated_low_confidence(0.15) benign(0.005) TCGA-R6-A6KZ-01 6 73112007 73112007 C - RIMS1 3'Flank 0.33 TCGA-R6-A6KZ-01 6 7583070 7583070 C A DSP Missense_Mutation p.Q1859K 0.09 probably_damaging(0.966) TCGA-R6-A6KZ-01 6 87725021 87725021 T A HTR1E 5'UTR 0.24 TCGA-R6-A6KZ-01 7 105207563 105207563 C - RINT1 Intron 0.38 TCGA-R6-A6KZ-01 7 21641052 21641052 C A DNAH11 Missense_Mutation p.S1155Y 0.32 benign(0.078) TCGA-R6-A6KZ-01 7 6537450 6537450 C T GRID2IP Silent p.G1197G 0.35 TCGA-R6-A6KZ-01 7 92734549 92734549 T G SAMD9 Silent p.R288R 0.45 TCGA-R6-A6KZ-01 8 105264200 105264200 A G RIMS2 3'Flank 0.31 TCGA-R6-A6KZ-01 8 110465006 110465006 A C PKHD1L1 Missense_Mutation p.K2189N 0.17 tolerated(0.49) benign(0.027) TCGA-R6-A6KZ-01 8 113348960 113348960 T G CSMD3 Silent p.R2314R 0.33 TCGA-R6-A6KZ-01 8 133184938 133184938 G T KCNQ3 Silent p.G349G 0.25 TCGA-R6-A6KZ-01 8 140743334 140743334 C T TRAPPC9 Silent p.V1237V 0.23 TCGA-R6-A6KZ-01 8 143572170 143572170 C T BAI1 Missense_Mutation p.T890M 0.19 deleterious(0.02) probably_damaging(0.938) TCGA-R6-A6KZ-01 8 144687987 144687987 G A PYCRL Silent p.T248T 0.38 TCGA-R6-A6KZ-01 8 26721982 26721982 C A ADRA1A Missense_Mutation p.A169S 0.17 tolerated(0.32) possibly_damaging(0.489) TCGA-R6-A6KZ-01 8 2795972 2795972 T C CSMD1 3'Flank 0.38 TCGA-R6-A6KZ-01 8 37691252 37691252 G A GPR124 Missense_Mutation p.R448H 0.22 deleterious(0.03) probably_damaging(0.985) TCGA-R6-A6KZ-01 8 63976767 63976767 G A TTPA Missense_Mutation p.R221W 0.14 deleterious(0) probably_damaging(0.998) TCGA-R6-A6KZ-01 8 70570779 70570779 G A SULF1 3'UTR 0.19 TCGA-R6-A6KZ-01 8 95189941 95189941 G C CDH17 Silent p.A53A 0.07 TCGA-R6-A6KZ-01 9 106885419 106885419 G A SMC2 Missense_Mutation p.M721I 0.25 tolerated(0.1) benign(0.001) TCGA-R6-A6KZ-01 9 107562106 107562106 A T ABCA1 Missense_Mutation p.V1646E 0.20 tolerated(0.05) benign(0.007) TCGA-R6-A6KZ-01 9 113168502 113168502 C T SVEP1 Silent p.P3126P 0.33 TCGA-R6-A6KZ-01 9 119164245 119164246 - T PAPPA 3'UTR 0.22 TCGA-R6-A6KZ-01 9 127563156 127563156 A G OLFML2A Intron 0.38 TCGA-R6-A6KZ-01 9 131344063 131344063 G A SPTAN1 Silent p.A488A 0.33 TCGA-R6-A6KZ-01 9 13247762 13247762 T G MPDZ Missense_Mutation p.T19P 0.17 deleterious(0.01) benign(0.071) TCGA-R6-A6KZ-01 9 135205659 135205659 T G SETX Missense_Mutation p.E442D 0.25 tolerated(1) benign(0) TCGA-R6-A6KZ-01 9 137293548 137293548 G A RXRA Silent p.L33L 0.21 TCGA-R6-A6KZ-01 9 138557177 138557177 G A LCN9 Missense_Mutation p.E132K 0.17 tolerated(0.64) benign(0.005) TCGA-R6-A6KZ-01 9 35846965 35846965 C T TMEM8B Silent p.V264V 0.15 TCGA-R6-A6KZ-01 9 82267549 82267549 C T TLE4 Silent p.L144L 0.21 TCGA-R6-A6KZ-01 9 96326653 96326653 A G FAM120A Missense_Mutation p.Q1063R 0.18 deleterious_low_confidence(0.02) benign(0.054) TCGA-R6-A6KZ-01 X 108638591 108638591 A C GUCY2F Silent p.T801T 0.82 TCGA-R6-A6KZ-01 X 117959408 117959408 A G ZCCHC12 Silent p.Q67Q 0.86 TCGA-R6-A6KZ-01 X 119509235 119509235 G T ATP1B4 Missense_Mutation p.D191Y 0.35 deleterious(0) probably_damaging(1) TCGA-R6-A6KZ-01 X 150840247 150840247 A C PASD1 Missense_Mutation p.N478T 0.52 tolerated(0.57) benign(0.012) TCGA-R6-A6KZ-01 X 153627911 153627911 G A RPL10 Missense_Mutation p.E56K 0.12 deleterious(0.01) possibly_damaging(0.591) TCGA-R6-A6KZ-01 X 19449553 19449553 T C MAP3K15 Intron 0.69 TCGA-R6-A6KZ-01 X 41332760 41332760 G T NYX Silent p.L18L 0.56 TCGA-R6-A6KZ-01 X 43591035 43591035 G A MAOA Missense_Mutation p.R297Q 0.33 deleterious(0) probably_damaging(0.982) TCGA-R6-A6KZ-01 X 79279597 79279597 G T TBX22 Missense_Mutation p.G131V 0.52 deleterious(0) probably_damaging(0.998) TCGA-R6-A6KZ-01 X 88009209 88009209 T G CPXCR1 Missense_Mutation p.V265G 0.65 deleterious(0) benign(0.11) TCGA-R6-A6KZ-01 X 96192269 96192269 A T DIAPH2 Missense_Mutation p.Q376L 0.42 deleterious(0) unknown(0) TCGA-R6-A6KZ-01 X 99551696 99551696 C A PCDH19 Missense_Mutation p.G1009V 0.48 tolerated(0.08) benign(0.206) TCGA-R6-A6L4-01 10 135342131 135342131 G A CYP2E1 Silent p.A108A 0.23 TCGA-R6-A6L4-01 10 31810100 31810100 A C ZEB1 Missense_Mutation p.K614Q 0.46 tolerated(0.05) probably_damaging(0.999) TCGA-R6-A6L4-01 10 61412546 61412546 A C SLC16A9 Missense_Mutation p.V505G 0.41 tolerated_low_confidence(0.11) benign(0.004) TCGA-R6-A6L4-01 10 61831657 61831657 C A ANK3 Missense_Mutation p.L2994F 0.60 benign(0.077) TCGA-R6-A6L4-01 10 84745257 84745257 G A NRG3 Missense_Mutation p.E663K 0.41 deleterious_low_confidence(0.01) probably_damaging(0.966) TCGA-R6-A6L4-01 11 123894134 123894134 A G OR10G9 Missense_Mutation p.R139G 0.26 deleterious(0) benign(0.04) TCGA-R6-A6L4-01 11 13751825 13751825 G C FAR1 3'UTR 0.42 TCGA-R6-A6L4-01 11 56310161 56310161 A C OR5M11 Silent p.T191T 0.46 TCGA-R6-A6L4-01 11 5758407 5758407 A C OR56B1 Missense_Mutation p.S221R 0.46 tolerated(0.06) benign(0.435) TCGA-R6-A6L4-01 12 29670402 29670402 A C TMTC1 Silent p.A709A 0.13 TCGA-R6-A6L4-01 12 52984624 52984624 T G KRT72 Missense_Mutation p.K362T 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-R6-A6L4-01 13 114077064 114077064 C T ADPRHL1 3'UTR 0.31 TCGA-R6-A6L4-01 13 33704134 33704134 A G STARD13 Missense_Mutation p.L227P 0.56 tolerated(0.22) benign(0.001) TCGA-R6-A6L4-01 13 73329533 73329533 C T BORA 3'UTR 0.26 TCGA-R6-A6L4-01 13 98119935 98119936 - A RAP2A 3'UTR 0.31 TCGA-R6-A6L4-01 14 22999311 22999311 A G TRAJ14 Missense_Mutation p.R12G 0.55 unknown(0) TCGA-R6-A6L4-01 14 71500740 71500740 T G PCNX Missense_Mutation p.L1254R 0.52 deleterious(0) possibly_damaging(0.883) TCGA-R6-A6L4-01 14 86089197 86089197 G A FLRT2 Missense_Mutation p.V447M 0.50 tolerated(0.32) benign(0.227) TCGA-R6-A6L4-01 15 23890550 23890550 C T MAGEL2 Silent p.P177P 0.38 TCGA-R6-A6L4-01 15 25486732 25486732 T C SNORD115-40 5'Flank 0.75 TCGA-R6-A6L4-01 15 31668445 31668445 T C KLF13 3'UTR 0.44 TCGA-R6-A6L4-01 15 50264787 50264787 C T ATP8B4 Missense_Mutation p.R412K 0.32 tolerated(1) benign(0.004) TCGA-R6-A6L4-01 15 55497769 55497769 G C RAB27A Nonsense_Mutation p.S201* 0.47 TCGA-R6-A6L4-01 15 79587657 79587657 A C ANKRD34C 3'UTR 0.39 TCGA-R6-A6L4-01 15 81041946 81041946 C A ABHD17C Missense_Mutation p.A228E 0.49 deleterious(0) probably_damaging(0.981) TCGA-R6-A6L4-01 15 83331462 83331462 T C AP3B2 Silent p.Q920Q 0.30 TCGA-R6-A6L4-01 15 88522472 88522472 T C NTRK3 Intron 0.48 TCGA-R6-A6L4-01 16 24800844 24800844 A G TNRC6A Missense_Mutation p.K294R 0.14 tolerated(0.38) benign(0.269) TCGA-R6-A6L4-01 16 50733865 50733865 G A NOD2 Silent p.R180R 0.45 TCGA-R6-A6L4-01 16 66920483 66920483 T G PDP2 3'UTR 0.39 TCGA-R6-A6L4-01 16 70917868 70917868 G T HYDIN Missense_Mutation p.P3312T 0.39 probably_damaging(0.958) TCGA-R6-A6L4-01 16 72984417 72984417 C T ZFHX3 Missense_Mutation p.R1056Q 0.27 probably_damaging(0.978) TCGA-R6-A6L4-01 16 9923493 9923493 A C GRIN2A Silent p.S598S 0.58 TCGA-R6-A6L4-01 17 16335477 16335477 T G TRPV2 Missense_Mutation p.F618V 0.44 deleterious(0) probably_damaging(1) TCGA-R6-A6L4-01 17 21911820 21911820 C A RP11-744K17.9 RNA 0.39 TCGA-R6-A6L4-01 17 29559830 29559830 C T NF1 Missense_Mutation p.H1143Y 0.29 deleterious(0.02) possibly_damaging(0.885) TCGA-R6-A6L4-01 17 38251254 38251254 G A NR1D1 Silent p.H456H 0.16 TCGA-R6-A6L4-01 17 39036389 39036389 T A KRT20 Missense_Mutation p.K252M 0.54 deleterious(0) probably_damaging(0.983) TCGA-R6-A6L4-01 17 44060543 44060543 G C MAPT Splice_Site p.X125_splice 0.33 TCGA-R6-A6L4-01 17 56436026 56436026 G A RNF43 Nonsense_Mutation p.R371* 0.44 TCGA-R6-A6L4-01 17 67125841 67125841 G T ABCA6 Missense_Mutation p.F281L 0.32 tolerated(1) benign(0.02) TCGA-R6-A6L4-01 17 7224748 7224748 C T NEURL4 Missense_Mutation p.A1044T 0.17 tolerated(0.63) benign(0.114) TCGA-R6-A6L4-01 17 7578526 7578526 C A TP53 Missense_Mutation p.C135F 0.36 deleterious(0) probably_damaging(1) TCGA-R6-A6L4-01 17 7797888 7797888 G T CHD3 Missense_Mutation p.D470Y 0.16 possibly_damaging(0.876) TCGA-R6-A6L4-01 17 80156227 80156227 A G CCDC57 Missense_Mutation p.L160P 0.32 deleterious(0) probably_damaging(0.994) TCGA-R6-A6L4-01 18 24496546 24496546 A C CHST9 Missense_Mutation p.L337V 0.31 deleterious(0) probably_damaging(0.999) TCGA-R6-A6L4-01 18 32825283 32825283 G A ZNF397 Missense_Mutation p.G205E 0.42 tolerated(0.75) benign(0.002) TCGA-R6-A6L4-01 18 34192047 34192047 A C FHOD3 Missense_Mutation p.N316H 0.38 deleterious(0.05) probably_damaging(0.996) TCGA-R6-A6L4-01 19 10473098 10473098 T C TYK2 Missense_Mutation p.K504R 0.38 tolerated(0.14) benign(0.027) TCGA-R6-A6L4-01 19 16965164 16965164 T G SIN3B Intron 0.30 TCGA-R6-A6L4-01 19 17746919 17746919 C A UNC13A Missense_Mutation p.K1043N 0.39 deleterious(0.02) probably_damaging(0.989) TCGA-R6-A6L4-01 19 21990849 21990849 T C ZNF43 Missense_Mutation p.T664A 0.50 tolerated(0.73) benign(0.06) TCGA-R6-A6L4-01 19 40006070 40006070 T A SELV Missense_Mutation p.V73D 0.24 deleterious(0.01) possibly_damaging(0.485) TCGA-R6-A6L4-01 19 40364190 40364191 CA - FCGBP Nonsense_Mutation p.C4817* 0.21 TCGA-R6-A6L4-01 19 40421095 40421095 C T FCGBP Silent p.V942V 0.47 TCGA-R6-A6L4-01 19 44536823 44536823 A C ZNF222 Missense_Mutation p.Q372H 0.27 deleterious(0.02) benign(0.181) TCGA-R6-A6L4-01 19 4511646 4511646 A C PLIN4 Missense_Mutation p.L762V 0.26 tolerated(1) benign(0.001) TCGA-R6-A6L4-01 19 51381679 51381679 T C KLK2 Missense_Mutation p.L217P 0.39 deleterious(0) probably_damaging(1) TCGA-R6-A6L4-01 19 53303226 53303226 G C ZNF28 Missense_Mutation p.I624M 0.27 tolerated(0.16) benign(0.046) TCGA-R6-A6L4-01 1 115275390 115275390 T C CSDE1 Silent p.K341K 0.24 TCGA-R6-A6L4-01 1 13036521 13036521 G T PRAMEF22 Missense_Mutation p.R198I 0.12 tolerated(0.07) probably_damaging(0.937) TCGA-R6-A6L4-01 1 154705591 154705591 T G KCNN3 Missense_Mutation p.N493T 0.16 tolerated(0.07) possibly_damaging(0.794) TCGA-R6-A6L4-01 1 157771260 157771260 T G FCRL1 Silent p.R332R 0.35 TCGA-R6-A6L4-01 1 158906935 158906935 G T PYHIN1 Missense_Mutation p.A79S 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-R6-A6L4-01 1 172634916 172634916 C T FASLG Silent p.C202C 0.45 TCGA-R6-A6L4-01 1 175335227 175335227 A G TNR Missense_Mutation p.S701P 0.13 deleterious(0) probably_damaging(0.974) TCGA-R6-A6L4-01 1 179504087 179504087 T C AXDND1 Silent p.S1007S 0.42 TCGA-R6-A6L4-01 1 186034411 186034411 C T HMCN1 Missense_Mutation p.P2519S 0.41 benign(0.227) TCGA-R6-A6L4-01 1 201035042 201035042 C T CACNA1S Missense_Mutation p.S926N 0.24 deleterious(0) benign(0.207) TCGA-R6-A6L4-01 1 212798688 212798688 C G FAM71A Missense_Mutation p.L157V 0.33 tolerated(0.2) possibly_damaging(0.742) TCGA-R6-A6L4-01 1 216373055 216373055 G T USH2A Missense_Mutation p.P1242H 0.15 possibly_damaging(0.897) TCGA-R6-A6L4-01 1 216462627 216462627 C A USH2A Missense_Mutation p.D656Y 0.21 possibly_damaging(0.853) TCGA-R6-A6L4-01 1 221912696 221912696 T G DUSP10 Missense_Mutation p.S131R 0.30 tolerated_low_confidence(0.54) benign(0.026) TCGA-R6-A6L4-01 1 237936826 237936826 A G RYR2 Missense_Mutation p.I3885V 0.21 probably_damaging(0.944) TCGA-R6-A6L4-01 1 62740610 62740610 G T KANK4 Missense_Mutation p.P56T 0.39 tolerated(0.29) possibly_damaging(0.564) TCGA-R6-A6L4-01 1 62740611 62740611 A G KANK4 Silent p.I55I 0.37 TCGA-R6-A6L4-01 1 74575235 74575235 G A LRRIQ3 Missense_Mutation p.P237L 0.08 tolerated(0.81) benign(0.004) TCGA-R6-A6L4-01 1 95538354 95538354 C T ALG14 Missense_Mutation p.R34Q 0.35 tolerated(0.16) benign(0.023) TCGA-R6-A6L4-01 20 2291025 2291025 T G TGM3 Missense_Mutation p.L128R 0.28 deleterious(0) probably_damaging(0.984) TCGA-R6-A6L4-01 20 31024338 31024338 T C ASXL1 Missense_Mutation p.S1275P 0.23 deleterious_low_confidence(0.03) probably_damaging(0.914) TCGA-R6-A6L4-01 20 37546851 37546851 C A PPP1R16B Missense_Mutation p.P416T 0.35 tolerated(0.63) benign(0) TCGA-R6-A6L4-01 20 39721161 39721161 C T TOP1 Missense_Mutation p.H222Y 0.29 deleterious(0.01) probably_damaging(0.934) TCGA-R6-A6L4-01 20 39744934 39744934 A C TOP1 Missense_Mutation p.K575T 0.29 deleterious(0) probably_damaging(0.99) TCGA-R6-A6L4-01 20 47871098 47871098 C T ZNFX1 Missense_Mutation p.E965K 0.46 deleterious(0.01) benign(0.332) TCGA-R6-A6L4-01 20 57430677 57430677 A C GNAS Intron 0.37 TCGA-R6-A6L4-01 20 62729634 62729634 G A OPRL1 Missense_Mutation p.E199K 0.07 tolerated(0.49) probably_damaging(0.911) TCGA-R6-A6L4-01 20 940874 940874 G C RSPO4 3'UTR 0.29 TCGA-R6-A6L4-01 22 44083441 44083441 G T EFCAB6 Missense_Mutation p.T351N 0.39 tolerated(0.61) benign(0.011) TCGA-R6-A6L4-01 2 10141122 10141131 CTCTGGGAAG - GRHL1 3'UTR 0.36 TCGA-R6-A6L4-01 2 109288870 109288870 G A LIMS1 Missense_Mutation p.A167T 0.39 tolerated(0.06) possibly_damaging(0.904) TCGA-R6-A6L4-01 2 10930911 10930911 C G PDIA6 Silent p.T211T 0.24 TCGA-R6-A6L4-01 2 135782246 135782246 G C MAP3K19 5'UTR 0.29 TCGA-R6-A6L4-01 2 1440109 1440109 T C TPO Silent p.T145T 0.20 TCGA-R6-A6L4-01 2 179590368 179590368 T G TTN Silent p.R6855R 0.33 TCGA-R6-A6L4-01 2 188210007 188210007 T G CALCRL 3'UTR 0.24 TCGA-R6-A6L4-01 2 197697794 197697794 C T PGAP1 3'UTR 0.21 TCGA-R6-A6L4-01 2 203818736 203818736 G A CARF Missense_Mutation p.E146K 0.20 tolerated_low_confidence(0.06) benign(0.056) TCGA-R6-A6L4-01 2 210699700 210699700 T G UNC80 Missense_Mutation p.F1003V 0.27 benign(0.022) TCGA-R6-A6L4-01 2 21252655 21252655 G T APOB Silent p.V491V 0.24 TCGA-R6-A6L4-01 2 212812223 212812223 G T ERBB4 Missense_Mutation p.A118E 0.28 deleterious(0.01) benign(0.048) TCGA-R6-A6L4-01 2 219314159 219314159 G C VIL1 3'UTR 0.31 TCGA-R6-A6L4-01 2 55562102 55562102 G A CCDC88A Missense_Mutation p.H619Y 0.27 tolerated(0.26) benign(0.001) TCGA-R6-A6L4-01 2 66775136 66775136 T G MEIS1 Missense_Mutation p.L317R 0.21 deleterious(0) probably_damaging(1) TCGA-R6-A6L4-01 2 90154070 90154070 T G IGKV3D-15 Missense_Mutation p.L53V 0.13 tolerated(0.11) benign(0.076) TCGA-R6-A6L4-01 3 132071589 132071589 A G ACPP Missense_Mutation p.Q297R 0.54 deleterious(0) probably_damaging(0.992) TCGA-R6-A6L4-01 3 142503559 142503559 C T TRPC1 Missense_Mutation p.S325F 0.24 deleterious(0) probably_damaging(0.931) TCGA-R6-A6L4-01 3 146309619 146309619 T G PLSCR5 Missense_Mutation p.K168T 0.51 tolerated(1) benign(0.086) TCGA-R6-A6L4-01 3 151156006 151156006 C G IGSF10 Missense_Mutation p.G2115R 0.42 deleterious(0) probably_damaging(1) TCGA-R6-A6L4-01 3 165547693 165547693 C A BCHE Nonsense_Mutation p.E377* 0.32 TCGA-R6-A6L4-01 3 165548550 165548550 T G BCHE Missense_Mutation p.N91T 0.35 deleterious(0) probably_damaging(0.969) TCGA-R6-A6L4-01 3 187463389 187463389 A T BCL6 5'UTR 0.27 TCGA-R6-A6L4-01 3 52456288 52456288 G A PHF7 Missense_Mutation p.R244H 0.33 tolerated(0.3) possibly_damaging(0.847) TCGA-R6-A6L4-01 3 62188912 62188912 G A PTPRG Silent p.T481T 0.30 TCGA-R6-A6L4-01 4 111543490 111543490 G A PITX2 Nonsense_Mutation p.Q43* 0.38 TCGA-R6-A6L4-01 4 148453698 148453698 G T EDNRA Missense_Mutation p.G197W 0.68 deleterious(0.03) probably_damaging(1) TCGA-R6-A6L4-01 4 153247195 153247195 G C FBXW7 Missense_Mutation p.T536R 0.39 tolerated(0.1) probably_damaging(1) TCGA-R6-A6L4-01 4 156137096 156137096 A C NPY2R 3'UTR 0.46 TCGA-R6-A6L4-01 4 177098797 177098797 A T WDR17 Nonsense_Mutation p.K1281* 0.32 TCGA-R6-A6L4-01 4 17839316 17839316 A T NCAPG Silent p.A786A 0.50 TCGA-R6-A6L4-01 4 17839318 17839318 C T NCAPG Missense_Mutation p.S787F 0.50 deleterious(0.03) benign(0.316) TCGA-R6-A6L4-01 4 62937993 62937993 T G LPHN3 3'UTR 0.50 TCGA-R6-A6L4-01 4 83838327 83838327 C T THAP9 Missense_Mutation p.T321I 0.44 deleterious(0.03) benign(0.084) TCGA-R6-A6L4-01 4 86938393 86938393 A T MAPK10 Silent p.G461G 0.36 TCGA-R6-A6L4-01 5 140214096 140214096 A C PCDHA7 Missense_Mutation p.N43T 0.18 tolerated_low_confidence(1) benign(0) TCGA-R6-A6L4-01 5 140590121 140590121 C T PCDHB12 Missense_Mutation p.R548C 0.41 deleterious_low_confidence(0.02) probably_damaging(0.988) TCGA-R6-A6L4-01 5 149669193 149669193 G A CAMK2A 5'Flank 0.26 TCGA-R6-A6L4-01 5 156476082 156476082 G A HAVCR1 Missense_Mutation p.P250S 0.07 tolerated(0.38) probably_damaging(0.932) TCGA-R6-A6L4-01 5 157107022 157107022 A G C5orf52 3'UTR 0.67 TCGA-R6-A6L4-01 5 32228931 32228931 A G MTMR12 3'UTR 0.16 TCGA-R6-A6L4-01 5 3599410 3599410 T G IRX1 Silent p.A116A 0.32 TCGA-R6-A6L4-01 5 45260742 45260742 A G HCN1 3'UTR 0.38 TCGA-R6-A6L4-01 6 102513685 102513685 A C GRIK2 Intron 0.29 TCGA-R6-A6L4-01 6 139170551 139170551 G C ECT2L Missense_Mutation p.R350T 0.46 deleterious(0.02) possibly_damaging(0.776) TCGA-R6-A6L4-01 6 152780060 152780060 T A SYNE1 Missense_Mutation p.K800N 0.29 benign(0.023) TCGA-R6-A6L4-01 6 28891220 28891220 G A TRIM27 Missense_Mutation p.H64Y 0.24 tolerated(0.05) benign(0.403) TCGA-R6-A6L4-01 6 29638637 29638637 A C MOG Intron 0.40 TCGA-R6-A6L4-01 6 32168965 32168965 G T NOTCH4 Missense_Mutation p.D1356E 0.29 tolerated(0.54) benign(0.002) TCGA-R6-A6L4-01 6 33255470 33255470 C A WDR46 Missense_Mutation p.G217C 0.33 deleterious(0) probably_damaging(1) TCGA-R6-A6L4-01 6 35058181 35058181 C T ANKS1A 3'UTR 0.21 TCGA-R6-A6L4-01 6 36790834 36790834 G A CPNE5 Silent p.L46L 0.33 TCGA-R6-A6L4-01 6 70099214 70099214 T C BAI3 3'UTR 0.33 TCGA-R6-A6L4-01 6 74304823 74304823 C G SLC17A5 Missense_Mutation p.D489H 0.37 deleterious(0.03) benign(0.013) TCGA-R6-A6L4-01 6 74502432 74502432 T G CD109 Missense_Mutation p.F929V 0.41 deleterious(0) probably_damaging(0.982) TCGA-R6-A6L4-01 6 84292073 84292073 A C SNAP91 Missense_Mutation p.F673V 0.21 deleterious(0.02) probably_damaging(0.961) TCGA-R6-A6L4-01 7 102523840 102523840 C T FBXL13 Missense_Mutation p.A434T 0.13 tolerated(0.17) benign(0.285) TCGA-R6-A6L4-01 7 103180780 103180780 A G RELN Missense_Mutation p.L2265P 0.30 tolerated(0.25) probably_damaging(0.918) TCGA-R6-A6L4-01 7 149128674 149128674 G A ZNF777 3'UTR 0.24 TCGA-R6-A6L4-01 7 28865440 28865440 A C CREB5 3'UTR 0.22 TCGA-R6-A6L4-01 7 36460273 36460273 C T ANLN Missense_Mutation p.R695W 0.42 deleterious(0) probably_damaging(0.953) TCGA-R6-A6L4-01 7 90747400 90747400 C A CDK14 Missense_Mutation p.P421T 0.44 deleterious(0.01) benign(0.239) TCGA-R6-A6L4-01 8 19262133 19262133 A T CSGALNACT1 3'UTR 0.47 TCGA-R6-A6L4-01 8 87616392 87616392 T G CNGB3 Missense_Mutation p.Q570H 0.37 deleterious(0.02) possibly_damaging(0.551) TCGA-R6-A6L4-01 8 89052979 89052979 A G MMP16 3'UTR 0.33 TCGA-R6-A6L4-01 9 102744887 102744887 C T ERP44 3'UTR 0.28 TCGA-R6-A6L4-01 9 119567995 119567995 T C ASTN2 Missense_Mutation p.D720G 0.19 tolerated(0.08) unknown(0) TCGA-R6-A6L4-01 9 125281615 125281615 T G OR1J4 Missense_Mutation p.L66V 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-R6-A6L4-01 9 125486972 125486972 A C OR1L4 Missense_Mutation p.K235T 0.17 deleterious(0) possibly_damaging(0.882) TCGA-R6-A6L4-01 9 130885294 130885294 T G PTGES2 Missense_Mutation p.K269T 0.38 deleterious(0.01) benign(0.035) TCGA-R6-A6L4-01 9 79118499 79118499 A C GCNT1 Missense_Mutation p.K401T 0.36 deleterious(0) probably_damaging(1) TCGA-R6-A6L4-01 9 90502633 90502633 A C SPATA31E1 Silent p.S1077S 0.19 TCGA-R6-A6L4-01 9 95076606 95076606 C T NOL8 Silent p.A767A 0.20 TCGA-R6-A6L4-01 X 105011435 105011435 C A IL1RAPL2 Silent p.I614I 0.73 TCGA-R6-A6L4-01 X 1571747 1571747 G A ASMTL 5'UTR 0.50 TCGA-R6-A6L4-01 X 78011949 78011949 T G LPAR4 3'UTR 0.57 TCGA-R6-A6L4-01 X 79283495 79283495 T C TBX22 Missense_Mutation p.V290A 0.07 tolerated(0.52) benign(0.014) TCGA-R6-A6L4-01 Y 14924810 14924810 C T USP9Y Nonsense_Mutation p.Q1478* 0.62 TCGA-R6-A6L6-01 10 112341689 112341689 C T SMC3 Missense_Mutation p.R186W 0.13 tolerated(0.18) probably_damaging(0.978) TCGA-R6-A6L6-01 10 127693499 127693499 C T FANK1 Missense_Mutation p.L196F 0.17 deleterious(0.01) probably_damaging(0.958) TCGA-R6-A6L6-01 10 17156080 17156080 G C CUBN Missense_Mutation p.L277V 0.13 tolerated(0.65) possibly_damaging(0.761) TCGA-R6-A6L6-01 10 43881943 43881943 G A HNRNPF 3'UTR 0.20 TCGA-R6-A6L6-01 10 44868694 44868694 G A CXCL12 3'Flank 0.31 TCGA-R6-A6L6-01 10 8005922 8005922 C T TAF3 Missense_Mutation p.S150L 0.25 deleterious(0) probably_damaging(0.985) TCGA-R6-A6L6-01 10 96698578 96698578 A G CYP2C9 Missense_Mutation p.I47V 0.14 tolerated(1) benign(0) TCGA-R6-A6L6-01 11 113683093 113683093 C G USP28 Missense_Mutation p.W626S 0.19 deleterious(0) probably_damaging(1) TCGA-R6-A6L6-01 11 118849880 118849880 G A FOXR1 Missense_Mutation p.R117Q 0.14 tolerated(1) benign(0.005) TCGA-R6-A6L6-01 11 118850345 118850345 G C FOXR1 Missense_Mutation p.G193A 0.23 deleterious(0) probably_damaging(1) TCGA-R6-A6L6-01 11 125780362 125780362 G A DDX25 Missense_Mutation p.R204Q 0.13 deleterious(0.04) benign(0.074) TCGA-R6-A6L6-01 11 129728597 129728597 C T TMEM45B 3'UTR 0.19 TCGA-R6-A6L6-01 11 1780814 1780814 A C CTSD Missense_Mutation p.V95G 0.14 deleterious(0) benign(0.33) TCGA-R6-A6L6-01 11 34093524 34093524 T C CAPRIN1 Missense_Mutation p.L119P 0.12 deleterious(0) probably_damaging(0.986) TCGA-R6-A6L6-01 11 51411621 51411621 C A OR4A5 Missense_Mutation p.V259F 0.12 deleterious_low_confidence(0.04) probably_damaging(0.954) TCGA-R6-A6L6-01 11 57157401 57157401 A C PRG2 Missense_Mutation p.L6R 0.11 deleterious(0) unknown(0) TCGA-R6-A6L6-01 11 59423454 59423454 C G PATL1 Missense_Mutation p.R263T 0.24 tolerated(0.08) possibly_damaging(0.459) TCGA-R6-A6L6-01 11 62382487 62382487 C G ROM1 3'UTR 0.25 TCGA-R6-A6L6-01 11 65267000 65267000 G C MALAT1 RNA 0.13 TCGA-R6-A6L6-01 11 65268522 65268522 G C MALAT1 RNA 0.23 TCGA-R6-A6L6-01 11 66555629 66555629 A G C11orf80 Splice_Site p.X175_splice 0.07 TCGA-R6-A6L6-01 11 68772956 68772956 G A MRGPRF Silent p.Y274Y 0.21 TCGA-R6-A6L6-01 11 73067322 73067322 C T ARHGEF17 Missense_Mutation p.R1256W 0.28 deleterious(0) possibly_damaging(0.698) TCGA-R6-A6L6-01 11 78387247 78387247 G A TENM4 Missense_Mutation p.R1816C 0.16 deleterious(0) probably_damaging(0.974) TCGA-R6-A6L6-01 12 41966630 41966630 C A PDZRN4 Silent p.I683I 0.13 TCGA-R6-A6L6-01 12 47628922 47628922 C T PCED1B Missense_Mutation p.H26Y 0.21 deleterious(0) possibly_damaging(0.589) TCGA-R6-A6L6-01 12 5153934 5153934 C T KCNA5 Silent p.D207D 0.09 TCGA-R6-A6L6-01 12 53009084 53009084 A T KRT73 Missense_Mutation p.N234K 0.20 deleterious(0.01) probably_damaging(0.967) TCGA-R6-A6L6-01 12 60175145 60175145 T A SLC16A7 3'UTR 0.20 TCGA-R6-A6L6-01 12 6442549 6442549 C T TNFRSF1A Silent p.G152G 0.31 TCGA-R6-A6L6-01 13 114294634 114294635 - T TFDP1 3'UTR 0.18 TCGA-R6-A6L6-01 13 27333602 27333602 G A GPR12 Silent p.V121V 0.16 TCGA-R6-A6L6-01 13 33685025 33685025 G C STARD13 Missense_Mutation p.A876G 0.11 tolerated(0.41) benign(0.066) TCGA-R6-A6L6-01 13 39265254 39265254 T C FREM2 Missense_Mutation p.I1258T 0.11 tolerated(0.73) benign(0.001) TCGA-R6-A6L6-01 13 48612080 48612080 G A NUDT15 Intron 0.23 TCGA-R6-A6L6-01 14 22938586 22938586 A G TRDV3 Silent p.F7F 0.08 TCGA-R6-A6L6-01 14 23417124 23417124 T A HAUS4 Nonsense_Mutation p.K221* 0.18 TCGA-R6-A6L6-01 14 38724781 38724781 G A CLEC14A Silent p.T149T 0.12 TCGA-R6-A6L6-01 14 45669278 45669278 C T FANCM 3'UTR 0.12 TCGA-R6-A6L6-01 14 52174919 52174919 G A FRMD6 Missense_Mutation p.D228N 0.39 deleterious(0) probably_damaging(1) TCGA-R6-A6L6-01 14 61788779 61788779 G A PRKCH 5'UTR 0.53 TCGA-R6-A6L6-01 14 69702803 69702803 G A EXD2 Missense_Mutation p.D364N 0.31 deleterious(0.05) probably_damaging(0.976) TCGA-R6-A6L6-01 15 25304759 25304759 G A SNORD116-3 3'Flank 0.05 TCGA-R6-A6L6-01 15 41065993 41065993 G C DNAJC17 Missense_Mutation p.L242V 0.16 deleterious(0) probably_damaging(0.927) TCGA-R6-A6L6-01 15 43476710 43476710 C T TMEM62 Missense_Mutation p.R620C 0.17 tolerated(0.06) possibly_damaging(0.799) TCGA-R6-A6L6-01 15 50528306 50528306 G A SLC27A2 3'UTR 0.29 TCGA-R6-A6L6-01 15 59064348 59064348 G T FAM63B Nonsense_Mutation p.E252* 0.17 TCGA-R6-A6L6-01 15 76633522 76633522 C T ISL2 Silent p.I281I 0.08 TCGA-R6-A6L6-01 15 81243504 81243504 C G KIAA1199 3'UTR 0.08 TCGA-R6-A6L6-01 16 15680909 15680909 C T C16orf45 3'UTR 0.12 TCGA-R6-A6L6-01 16 24583538 24583538 T C RBBP6 Silent p.S1717S 0.08 TCGA-R6-A6L6-01 16 49669911 49669911 G A ZNF423 Missense_Mutation p.A1051V 0.24 tolerated(0.22) benign(0.06) TCGA-R6-A6L6-01 17 37902406 37902407 - C GRB7 Frame_Shift_Ins p.L492Pfs*29 0.10 TCGA-R6-A6L6-01 17 38179417 38179417 G A MED24 Silent p.G739G 0.04 TCGA-R6-A6L6-01 17 38710829 38710829 T G CCR7 3'UTR 0.03 TCGA-R6-A6L6-01 17 39156016 39156016 G C KRTAP3-2 Silent p.V30V 0.10 TCGA-R6-A6L6-01 17 39525760 39525760 G A KRT33B Silent p.N81N 0.02 TCGA-R6-A6L6-01 17 5084697 5084697 C G ZNF594 3'UTR 0.10 TCGA-R6-A6L6-01 17 67079107 67079107 T C ABCA6 Missense_Mutation p.Y1508C 0.17 deleterious(0) probably_damaging(0.983) TCGA-R6-A6L6-01 17 73662603 73662603 G A RECQL5 Missense_Mutation p.P12L 0.22 deleterious(0.04) benign(0.021) TCGA-R6-A6L6-01 17 74286138 74286138 C T QRICH2 Missense_Mutation p.E1079K 0.54 deleterious(0) benign(0.217) TCGA-R6-A6L6-01 18 28923621 28923621 G A DSG1 Intron 0.30 TCGA-R6-A6L6-01 18 40854171 40854171 C T SYT4 Missense_Mutation p.A75T 0.20 tolerated(0.16) benign(0.125) TCGA-R6-A6L6-01 18 44593476 44593476 G A KATNAL2 Missense_Mutation p.V199M 0.15 deleterious(0) probably_damaging(0.996) TCGA-R6-A6L6-01 19 12089939 12089939 G T ZNF763 3'UTR 0.36 TCGA-R6-A6L6-01 19 14707973 14707976 AGTG - CLEC17A Splice_Site p.X216_splice 0.23 TCGA-R6-A6L6-01 19 16923594 16923594 C G NWD1 Intron 0.27 TCGA-R6-A6L6-01 19 17108037 17108037 C A CPAMD8 Missense_Mutation p.G374W 0.15 deleterious(0) probably_damaging(1) TCGA-R6-A6L6-01 19 17778978 17778978 C T UNC13A Missense_Mutation p.R139H 0.14 deleterious_low_confidence(0.01) possibly_damaging(0.793) TCGA-R6-A6L6-01 19 23329258 23329258 A C ZNF730 Missense_Mutation p.K471T 0.14 deleterious(0.02) probably_damaging(0.983) TCGA-R6-A6L6-01 19 24309076 24309076 C G ZNF254 Missense_Mutation p.Q92E 0.21 tolerated(0.17) benign(0.049) TCGA-R6-A6L6-01 19 41888868 41888868 G T TMEM91 Intron 0.44 TCGA-R6-A6L6-01 19 43407843 43407843 C G PSG6 Missense_Mutation p.G424A 0.11 tolerated(0.51) benign(0.001) TCGA-R6-A6L6-01 19 45662002 45662002 G C NKPD1 Missense_Mutation p.L150V 0.40 tolerated_low_confidence(0.1) benign(0.034) TCGA-R6-A6L6-01 19 49703625 49703625 G T TRPM4 Missense_Mutation p.R905L 0.35 deleterious(0) probably_damaging(1) TCGA-R6-A6L6-01 19 52942558 52942558 C T ZNF534 Silent p.F628F 0.36 TCGA-R6-A6L6-01 19 9362188 9362188 C T OR7E24 Missense_Mutation p.R157C 0.29 tolerated(0.32) benign(0.005) TCGA-R6-A6L6-01 1 111494956 111494956 G A LRIF1 Missense_Mutation p.H184Y 0.17 deleterious(0) possibly_damaging(0.607) TCGA-R6-A6L6-01 1 116675886 116675886 G A MAB21L3 Missense_Mutation p.R330Q 0.44 tolerated(0.55) benign(0.135) TCGA-R6-A6L6-01 1 158299886 158299886 C T CD1B Silent p.E121E 0.19 TCGA-R6-A6L6-01 1 168282183 168282183 G A TBX19 Silent p.A430A 0.38 TCGA-R6-A6L6-01 1 247737631 247737631 A T GCSAML Missense_Mutation p.R119W 0.20 deleterious(0.01) probably_damaging(0.95) TCGA-R6-A6L6-01 1 27732381 27732381 C T WASF2 3'UTR 0.14 TCGA-R6-A6L6-01 1 46511589 46511589 C A PIK3R3 Splice_Site p.X396_splice 0.09 TCGA-R6-A6L6-01 1 59248515 59248516 - AG JUN Frame_Shift_Ins p.E77Wfs*4 0.30 TCGA-R6-A6L6-01 1 65871646 65871647 - TA DNAJC6 Frame_Shift_Ins p.M775Ifs*38 0.24 TCGA-R6-A6L6-01 1 8416274 8416274 G T RERE Missense_Mutation p.P1458T 0.29 unknown(0) TCGA-R6-A6L6-01 20 3914331 3914331 C G RNF24 3'UTR 0.47 TCGA-R6-A6L6-01 20 40877452 40877452 G T PTPRT Silent p.T729T 0.36 TCGA-R6-A6L6-01 20 58514148 58514148 C T PPP1R3D Missense_Mutation p.R280H 0.21 tolerated(0.27) benign(0.029) TCGA-R6-A6L6-01 20 61987390 61987390 T C CHRNA4 Missense_Mutation p.N107S 0.17 deleterious(0.01) benign(0.371) TCGA-R6-A6L6-01 21 46320388 46320388 C T ITGB2 Silent p.E248E 0.07 TCGA-R6-A6L6-01 22 20781731 20781731 C T SCARF2 Silent p.S554S 0.16 TCGA-R6-A6L6-01 22 22764462 22764462 C T IGLV1-40 Silent p.L68L 0.11 TCGA-R6-A6L6-01 22 29191375 29191375 C G XBP1 3'UTR 0.08 TCGA-R6-A6L6-01 22 38379656 38379656 G C SOX10 Missense_Mutation p.P46A 0.16 tolerated(0.32) benign(0.025) TCGA-R6-A6L6-01 22 39884528 39884528 C T MGAT3 Silent p.F392F 0.13 TCGA-R6-A6L6-01 2 144381722 144381722 G A ARHGAP15 Missense_Mutation p.D342N 0.25 tolerated(0.06) probably_damaging(0.976) TCGA-R6-A6L6-01 2 167322481 167322481 T G SCN7A Silent p.V227V 0.21 TCGA-R6-A6L6-01 2 179732921 179732921 G C CCDC141 Silent p.L802L 0.16 TCGA-R6-A6L6-01 2 211082784 211082785 - C ACADL Frame_Shift_Ins p.A93Sfs*43 0.14 TCGA-R6-A6L6-01 2 234628062 234628062 C T UGT1A4 Missense_Mutation p.T199M 0.20 deleterious(0.03) probably_damaging(1) TCGA-R6-A6L6-01 2 237406090 237406090 C T IQCA1 Missense_Mutation p.G18S 0.31 tolerated(0.72) benign(0.001) TCGA-R6-A6L6-01 2 26150648 26150649 - T KIF3C 3'UTR 0.19 TCGA-R6-A6L6-01 2 33952553 33952553 C T AC009499.1 Intron 0.21 TCGA-R6-A6L6-01 3 121448073 121448073 G C GOLGB1 Missense_Mutation p.L122V 0.14 benign(0.012) TCGA-R6-A6L6-01 3 14860755 14860755 G A FGD5 Silent p.S59S 0.18 TCGA-R6-A6L6-01 3 180320998 180320998 C T TTC14 Missense_Mutation p.R125C 0.11 deleterious(0.02) probably_damaging(0.977) TCGA-R6-A6L6-01 4 103832695 103832695 C T SLC9B1 Splice_Site p.X277_splice 0.11 TCGA-R6-A6L6-01 4 13603449 13603449 C T BOD1L1 Missense_Mutation p.S1692N 0.25 probably_damaging(0.998) TCGA-R6-A6L6-01 4 1988154 1988154 G A NELFA Intron 0.09 TCGA-R6-A6L6-01 4 76489432 76489432 C A C4orf26 Missense_Mutation p.Q74K 0.15 deleterious_low_confidence(0) benign(0.092) TCGA-R6-A6L6-01 5 112889642 112889642 C G YTHDC2 Missense_Mutation p.L686V 0.26 deleterious(0.04) probably_damaging(0.951) TCGA-R6-A6L6-01 5 115783299 115783299 G A SEMA6A Silent p.S701S 0.19 TCGA-R6-A6L6-01 5 138650381 138650381 C G MATR3 Missense_Mutation p.I310M 0.21 deleterious(0.04) probably_damaging(0.964) TCGA-R6-A6L6-01 5 140174555 140174555 G A PCDHA2 Silent p.A2A 0.14 TCGA-R6-A6L6-01 5 140666 140666 C T PLEKHG4B Missense_Mutation p.R82W 0.07 deleterious(0) possibly_damaging(0.874) TCGA-R6-A6L6-01 5 140731471 140731471 G A PCDHGB1 Silent p.V548V 0.18 TCGA-R6-A6L6-01 5 140755185 140755185 G A PCDHGA6 Missense_Mutation p.G512E 0.06 deleterious_low_confidence(0) probably_damaging(1) TCGA-R6-A6L6-01 5 140812130 140812130 G A PCDHGA12 Missense_Mutation p.A602T 0.06 deleterious_low_confidence(0) possibly_damaging(0.906) TCGA-R6-A6L6-01 5 149494062 149494062 G A PDGFRB 3'UTR 0.13 TCGA-R6-A6L6-01 5 159520354 159520354 C T PWWP2A Missense_Mutation p.A435T 0.12 tolerated(0.13) possibly_damaging(0.599) TCGA-R6-A6L6-01 5 180662203 180662203 C G TRIM41 3'UTR 0.12 TCGA-R6-A6L6-01 5 71482533 71482533 C A MAP1B Silent p.S154S 0.12 TCGA-R6-A6L6-01 6 10404845 10404845 G C TFAP2A Silent p.L220L 0.14 TCGA-R6-A6L6-01 6 121769389 121769389 A G GJA1 3'UTR 0.16 TCGA-R6-A6L6-01 6 149856809 149856809 C T PPIL4 Silent p.V129V 0.24 TCGA-R6-A6L6-01 6 152655226 152655226 C T SYNE1 Silent p.Q4237Q 0.07 TCGA-R6-A6L6-01 6 153043106 153043106 C T MYCT1 Silent p.L142L 0.25 TCGA-R6-A6L6-01 6 160969601 160969601 G T LPA Nonsense_Mutation p.C1688* 0.20 TCGA-R6-A6L6-01 6 25605048 25605048 G A LRRC16A Silent p.G1187G 0.24 TCGA-R6-A6L6-01 6 30131704 30131705 TT - TRIM15 Frame_Shift_Del p.Y82Lfs*61 0.09 TCGA-R6-A6L6-01 6 30864562 30864562 G A DDR1 Missense_Mutation p.G597R 0.25 deleterious(0.02) benign(0.022) TCGA-R6-A6L6-01 6 46984422 46984422 C A GPR110 Nonsense_Mutation p.E232* 0.11 TCGA-R6-A6L6-01 6 50812194 50812194 T C TFAP2B 3'UTR 0.07 TCGA-R6-A6L6-01 7 100184095 100184095 G T FBXO24 5'Flank 0.40 TCGA-R6-A6L6-01 7 122033528 122033528 C G CADPS2 Missense_Mutation p.R952T 0.22 tolerated(0.1) benign(0.275) TCGA-R6-A6L6-01 7 127668232 127668233 - T LRRC4 3'UTR 0.13 TCGA-R6-A6L6-01 7 140501350 140501350 G A BRAF Missense_Mutation p.T241M 0.17 deleterious(0) probably_damaging(0.91) TCGA-R6-A6L6-01 7 20452217 20452217 C T ITGB8 3'UTR 0.15 TCGA-R6-A6L6-01 7 21654793 21654793 T - DNAH11 Frame_Shift_Del p.F1306Lfs*11 0.19 TCGA-R6-A6L6-01 7 26779515 26779515 G A SKAP2 Missense_Mutation p.R126C 0.09 deleterious(0) probably_damaging(1) TCGA-R6-A6L6-01 7 36397154 36397154 A G KIAA0895 Missense_Mutation p.L75P 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-R6-A6L6-01 7 44080840 44080840 G T DBNL 5'Flank 0.34 TCGA-R6-A6L6-01 7 64442428 64442428 C T ZNF117 5'UTR 0.12 TCGA-R6-A6L6-01 7 70886046 70886046 C A WBSCR17 Missense_Mutation p.P306H 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-R6-A6L6-01 7 75615061 75615061 C T POR Silent p.F521F 0.12 TCGA-R6-A6L6-01 7 77797250 77797250 C G MAGI2 Missense_Mutation p.R860T 0.21 deleterious(0) possibly_damaging(0.587) TCGA-R6-A6L6-01 8 117954975 117954975 C G AARD 3'UTR 0.38 TCGA-R6-A6L6-01 8 22939069 22939069 G A RP11-875O11.2 RNA 0.25 TCGA-R6-A6L6-01 8 42692978 42692978 T A THAP1 3'UTR 0.20 TCGA-R6-A6L6-01 8 52732261 52732261 C T PCMTD1 3'UTR 0.06 TCGA-R6-A6L6-01 8 67417674 67417674 G A C8orf46 Missense_Mutation p.R64H 0.20 tolerated(0.55) benign(0.011) TCGA-R6-A6L6-01 8 72981315 72981315 G C TRPA1 Missense_Mutation p.F129L 0.14 tolerated(0.75) benign(0.02) TCGA-R6-A6L6-01 9 137801649 137801649 C T FCN1 Missense_Mutation p.A326T 0.13 tolerated(0.57) benign(0.006) TCGA-R6-A6L6-01 9 18928632 18928632 C A FAM154A Missense_Mutation p.W281C 0.23 deleterious(0.04) possibly_damaging(0.903) TCGA-R6-A6L6-01 9 37034070 37034071 - CCA PAX5 5'UTR 0.09 TCGA-R6-A6L6-01 9 67968379 67968379 G A ANKRD20A1 Missense_Mutation p.M646I 0.13 deleterious(0.05) benign(0) TCGA-R6-A6L6-01 9 71396167 71396167 G T FAM122A 3'UTR 0.30 TCGA-R6-A6L6-01 9 93976300 93976300 T C AUH 3'UTR 0.21 TCGA-R6-A6L6-01 X 107976118 107976118 C A IRS4 Missense_Mutation p.A1153S 0.29 tolerated_low_confidence(0.2) unknown(0) TCGA-R6-A6L6-01 X 130220591 130220591 G A ARHGAP36 Missense_Mutation p.A480T 0.32 tolerated(0.63) benign(0.045) TCGA-R6-A6L6-01 X 31525458 31525458 C T DMD Missense_Mutation p.R2777K 0.32 benign(0.14) TCGA-R6-A6L6-01 X 40448252 40448252 G C ATP6AP2 Missense_Mutation p.E18Q 0.29 tolerated(0.43) benign(0.268) TCGA-R6-A6L6-01 Y 14821396 14821396 C G USP9Y Missense_Mutation p.H6D 0.26 deleterious_low_confidence(0) benign(0) TCGA-R6-A6XG-01 10 103867422 103867422 C G LDB1 3'UTR 0.20 TCGA-R6-A6XG-01 10 104417929 104417929 C T TRIM8 3'UTR 0.31 TCGA-R6-A6XG-01 10 105148639 105148658 CAACCTAGTACACTTGAAGT - TAF5 3'UTR 0.27 TCGA-R6-A6XG-01 10 115340369 115340369 C T HABP2 Silent p.D252D 0.46 TCGA-R6-A6XG-01 10 131634251 131634251 A C EBF3 3'UTR 0.11 TCGA-R6-A6XG-01 10 17841882 17841882 G T TMEM236 3'UTR 0.63 TCGA-R6-A6XG-01 10 22208783 22208783 C T DNAJC1 Missense_Mutation p.G205S 0.63 tolerated(0.47) benign(0.016) TCGA-R6-A6XG-01 10 50227532 50227532 G T VSTM4 3'UTR 0.44 TCGA-R6-A6XG-01 10 50916692 50916692 G T C10orf53 3'UTR 0.30 TCGA-R6-A6XG-01 10 52005058 52005058 A G ASAH2 Missense_Mutation p.L95P 0.05 tolerated_low_confidence(0.13) benign(0.003) TCGA-R6-A6XG-01 10 61012606 61012606 T G FAM13C Missense_Mutation p.E495D 0.11 tolerated(0.41) probably_damaging(0.999) TCGA-R6-A6XG-01 10 64967532 64967532 C T JMJD1C Silent p.Q1299Q 0.20 TCGA-R6-A6XG-01 10 72020484 72020484 C T NPFFR1 Missense_Mutation p.D112N 0.24 tolerated(0.1) benign(0.021) TCGA-R6-A6XG-01 10 72298676 72298676 C T PALD1 Missense_Mutation p.A494V 0.17 tolerated(1) benign(0.004) TCGA-R6-A6XG-01 10 7614282 7614282 T G ITIH5 Intron 0.08 TCGA-R6-A6XG-01 10 76863737 76863737 C T DUSP13 Intron 0.29 TCGA-R6-A6XG-01 10 78799285 78799285 C T KCNMA1 Splice_Site p.X620_splice 0.28 TCGA-R6-A6XG-01 11 115045137 115045137 A T CADM1 3'UTR 0.39 TCGA-R6-A6XG-01 11 1155658 1155658 G A MUC5AC Missense_Mutation p.E116K 0.89 tolerated(0.09) probably_damaging(0.981) TCGA-R6-A6XG-01 11 117075970 117075970 C A PCSK7 3'UTR 0.56 TCGA-R6-A6XG-01 11 1270633 1270633 C T MUC5B Missense_Mutation p.R4175C 0.81 unknown(0) TCGA-R6-A6XG-01 11 18042523 18042523 G T TPH1 3'UTR 0.54 TCGA-R6-A6XG-01 11 2892082 2892082 C T KCNQ1DN RNA 0.43 TCGA-R6-A6XG-01 11 33667346 33667346 C T KIAA1549L Missense_Mutation p.P1545S 0.18 deleterious(0) probably_damaging(1) TCGA-R6-A6XG-01 11 46402010 46402010 T C DGKZ 3'UTR 0.12 TCGA-R6-A6XG-01 11 49805616 49805616 T A RP11-707M1.1 RNA 0.43 TCGA-R6-A6XG-01 11 5153446 5153446 A G OR52A5 Silent p.L143L 0.81 TCGA-R6-A6XG-01 11 55371506 55371506 A G OR4C11 Missense_Mutation p.L115P 0.39 deleterious(0) possibly_damaging(0.841) TCGA-R6-A6XG-01 11 55890377 55890377 T A OR8H3 Missense_Mutation p.F177I 0.79 deleterious(0) probably_damaging(0.982) TCGA-R6-A6XG-01 11 62574696 62574696 C T STX5 3'UTR 0.47 TCGA-R6-A6XG-01 11 64044391 64044391 C A BAD Intron 0.33 TCGA-R6-A6XG-01 11 6424578 6424578 C - APBB1 Frame_Shift_Del p.T338Rfs*2 0.22 TCGA-R6-A6XG-01 11 67059599 67059599 A C ANKRD13D Missense_Mutation p.T227P 0.48 deleterious(0) probably_damaging(0.992) TCGA-R6-A6XG-01 11 70666754 70666754 C T SHANK2 Missense_Mutation p.R404H 0.20 tolerated(0.07) benign(0.35) TCGA-R6-A6XG-01 11 8478953 8478953 G C STK33 Nonsense_Mutation p.S211* 0.80 TCGA-R6-A6XG-01 11 8715405 8715405 G A ST5 3'UTR 0.28 TCGA-R6-A6XG-01 11 9005454 9005454 A C NRIP3 Silent p.P226P 0.40 TCGA-R6-A6XG-01 11 94039705 94039705 C A FOLR4 Nonsense_Mutation p.C55* 0.36 TCGA-R6-A6XG-01 12 109201441 109201441 C T SSH1 Silent p.T233T 0.31 TCGA-R6-A6XG-01 12 110240891 110240891 C T TRPV4 Missense_Mutation p.R206H 0.14 tolerated(0.14) benign(0.002) TCGA-R6-A6XG-01 12 21014003 21014003 A C SLCO1B3 Missense_Mutation p.S138R 0.28 deleterious(0.02) possibly_damaging(0.878) TCGA-R6-A6XG-01 12 27916260 27916260 C G MANSC4 Missense_Mutation p.R145T 0.07 tolerated(0.34) benign(0.002) TCGA-R6-A6XG-01 12 47630009 47630009 G A PCED1B Missense_Mutation p.R388H 0.25 tolerated(0.56) benign(0.212) TCGA-R6-A6XG-01 12 49433544 49433544 G A KMT2D Missense_Mutation p.S2670F 0.34 probably_damaging(0.931) TCGA-R6-A6XG-01 12 54576419 54576420 GA - SMUG1 Intron 0.30 TCGA-R6-A6XG-01 12 58131328 58131328 G A AGAP2 Silent p.V234V 0.45 TCGA-R6-A6XG-01 12 69973161 69973193 TATCTTTGGAGAAGTCAGAGTTCTTTACAATCA ATCTTTGGAGAAGTCAGAGTTCTTTACAATC FRS2 3'UTR 0.26 TCGA-R6-A6XG-01 12 9085324 9085324 C T PHC1 Missense_Mutation p.A424V 0.26 tolerated_low_confidence(0.24) unknown(0) TCGA-R6-A6XG-01 13 103385504 103385504 G A CCDC168 Missense_Mutation p.T1219M 0.54 tolerated(0.21) unknown(0) TCGA-R6-A6XG-01 13 19751215 19751215 A G TUBA3C Missense_Mutation p.V303A 0.13 tolerated_low_confidence(0.12) possibly_damaging(0.791) TCGA-R6-A6XG-01 13 21562256 21562256 C A LATS2 Missense_Mutation p.D555Y 0.32 deleterious(0.02) possibly_damaging(0.674) TCGA-R6-A6XG-01 13 49055921 49055921 G A RB1 3'UTR 0.38 TCGA-R6-A6XG-01 13 49782468 49782468 G T FNDC3A 3'UTR 0.27 TCGA-R6-A6XG-01 13 60435609 60435609 C T DIAPH3 Missense_Mutation p.C890Y 0.18 deleterious(0) probably_damaging(1) TCGA-R6-A6XG-01 13 64413248 64413248 A T RP11-394A14.2 RNA 0.07 TCGA-R6-A6XG-01 13 84452296 84452296 G A SLITRK1 3'UTR 0.86 TCGA-R6-A6XG-01 13 88329844 88329844 G A SLITRK5 Missense_Mutation p.R734H 0.26 tolerated(0.2) benign(0.001) TCGA-R6-A6XG-01 13 95092239 95092239 A G DCT Silent p.A524A 0.57 TCGA-R6-A6XG-01 14 101500143 101500143 A C MIR495 RNA 0.50 TCGA-R6-A6XG-01 14 105416412 105416412 G A AHNAK2 Silent p.D1792D 0.38 TCGA-R6-A6XG-01 14 106791214 106791214 A C IGHV3-30 Missense_Mutation p.F48V 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.774) TCGA-R6-A6XG-01 14 22689798 22689798 C G TRAV35 Missense_Mutation p.L3V 0.39 deleterious(0.01) probably_damaging(0.99) TCGA-R6-A6XG-01 14 24657939 24657939 C A IPO4 Nonsense_Mutation p.E19* 0.07 TCGA-R6-A6XG-01 14 33300130 33300130 A C AKAP6 3'UTR 0.62 TCGA-R6-A6XG-01 14 35180744 35180744 C T CFL2 3'UTR 0.52 TCGA-R6-A6XG-01 14 36840721 36840721 G A DPPA3P2 RNA 0.52 TCGA-R6-A6XG-01 14 55512132 55512132 A T SOCS4 3'UTR 0.38 TCGA-R6-A6XG-01 14 74203747 74203747 G A ELMSAN1 Missense_Mutation p.T568I 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-R6-A6XG-01 14 75748089 75748089 T C FOS Missense_Mutation p.S369P 0.66 tolerated(0.17) probably_damaging(0.993) TCGA-R6-A6XG-01 14 90873577 90873577 A G CALM1 3'UTR 0.11 TCGA-R6-A6XG-01 14 92139304 92139304 A T CATSPERB Silent p.P345P 0.55 TCGA-R6-A6XG-01 14 94594153 94594153 C T IFI27L2 Missense_Mutation p.E126K 0.26 tolerated_low_confidence(0.05) benign(0.292) TCGA-R6-A6XG-01 15 25330419 25330419 T C SNORD116-18 5'Flank 0.28 TCGA-R6-A6XG-01 15 28431882 28431882 T G HERC2 Missense_Mutation p.E2889A 0.34 possibly_damaging(0.872) TCGA-R6-A6XG-01 15 48063590 48063590 C T SEMA6D Nonsense_Mutation p.R944* 0.43 TCGA-R6-A6XG-01 15 55838889 55838889 G T PYGO1 Missense_Mutation p.P198T 0.35 deleterious(0.02) benign(0.255) TCGA-R6-A6XG-01 15 85383828 85383828 C T ALPK3 Missense_Mutation p.R642W 0.23 deleterious_low_confidence(0) possibly_damaging(0.591) TCGA-R6-A6XG-01 15 90806894 90806894 T G TTLL13 3'Flank 0.31 TCGA-R6-A6XG-01 16 1574888 1574888 A C IFT140 Missense_Mutation p.L965R 0.11 deleterious(0) probably_damaging(0.962) TCGA-R6-A6XG-01 16 20429577 20429577 C G ACSM5 Missense_Mutation p.A134G 0.13 tolerated(0.42) possibly_damaging(0.766) TCGA-R6-A6XG-01 16 21098317 21098317 C A DNAH3 Silent p.T910T 0.40 TCGA-R6-A6XG-01 16 24950899 24950899 C G ARHGAP17 Missense_Mutation p.D504H 0.04 deleterious(0) benign(0.248) TCGA-R6-A6XG-01 16 27374546 27374546 A G IL4R Missense_Mutation p.S625G 0.07 tolerated(0.19) benign(0.022) TCGA-R6-A6XG-01 16 29677887 29677887 G A SPN 3'UTR 0.28 TCGA-R6-A6XG-01 16 30409330 30409330 C A ZNF48 Silent p.P253P 0.08 TCGA-R6-A6XG-01 16 31309066 31309066 A T ITGAM Missense_Mutation p.R501W 0.08 deleterious(0) benign(0.359) TCGA-R6-A6XG-01 16 46737582 46737583 - A MYLK3 3'Flank 0.28 TCGA-R6-A6XG-01 16 48595560 48595560 C T N4BP1 Missense_Mutation p.E332K 0.37 tolerated(0.26) benign(0.159) TCGA-R6-A6XG-01 16 49407984 49407984 A C C16orf78 Missense_Mutation p.K45T 0.20 deleterious(0.01) possibly_damaging(0.866) TCGA-R6-A6XG-01 16 61851392 61851392 C A CDH8 Missense_Mutation p.S423I 0.39 deleterious(0.02) possibly_damaging(0.899) TCGA-R6-A6XG-01 16 64980864 64980864 A C CDH11 3'UTR 0.32 TCGA-R6-A6XG-01 16 69350218 69350218 G A VPS4A Missense_Mutation p.R75Q 0.27 tolerated(0.43) benign(0.018) TCGA-R6-A6XG-01 16 79632734 79632734 A G MAF Missense_Mutation p.F356L 0.30 deleterious(0.02) possibly_damaging(0.897) TCGA-R6-A6XG-01 16 81187565 81187565 C A PKD1L2 Splice_Site 0.16 TCGA-R6-A6XG-01 16 85743833 85743833 C T C16orf74 Missense_Mutation p.D37N 0.62 tolerated_low_confidence(1) benign(0.003) TCGA-R6-A6XG-01 16 9857432 9857432 A G GRIN2A Silent p.N1323N 0.58 TCGA-R6-A6XG-01 17 1936802 1936802 G A DPH1 Missense_Mutation p.R27Q 0.33 tolerated(0.08) benign(0.004) TCGA-R6-A6XG-01 17 26093544 26093544 C T NOS2 Silent p.P746P 0.31 TCGA-R6-A6XG-01 17 29271984 29271984 G A ADAP2 Silent p.E190E 0.58 TCGA-R6-A6XG-01 17 32907806 32907806 C A TMEM132E 5'UTR 0.29 TCGA-R6-A6XG-01 17 34062293 34062293 C T RASL10B Silent p.S30S 0.34 TCGA-R6-A6XG-01 17 38080379 38080379 G A ORMDL3 Silent p.Y26Y 0.31 TCGA-R6-A6XG-01 17 41981824 41981824 G A MPP2 Missense_Mutation p.P2L 0.23 deleterious(0.01) benign(0.076) TCGA-R6-A6XG-01 17 42636566 42636566 A G FZD2 Missense_Mutation p.I504V 0.10 tolerated(0.98) benign(0.013) TCGA-R6-A6XG-01 17 43227386 43227386 G A HEXIM1 Missense_Mutation p.E277K 0.07 deleterious(0) probably_damaging(0.998) TCGA-R6-A6XG-01 17 67181658 67181658 C T ABCA10 Silent p.P819P 0.13 TCGA-R6-A6XG-01 17 80361875 80361875 G A OGFOD3 Missense_Mutation p.R213C 0.23 deleterious(0) probably_damaging(1) TCGA-R6-A6XG-01 18 13646929 13646929 A C LDLRAD4 3'UTR 0.30 TCGA-R6-A6XG-01 18 14339564 14339564 C T CYP4F35P RNA 0.44 TCGA-R6-A6XG-01 18 14534903 14534903 C T POTEC Missense_Mutation p.G305E 0.15 tolerated(0.25) probably_damaging(0.999) TCGA-R6-A6XG-01 18 66348308 66348308 T G TMX3 Silent p.S315S 0.24 TCGA-R6-A6XG-01 19 10428164 10428164 G A RAVER1 Missense_Mutation p.A746V 0.40 tolerated(0.05) probably_damaging(0.994) TCGA-R6-A6XG-01 19 11727779 11727779 T C ZNF627 Missense_Mutation p.F154S 0.26 deleterious(0) probably_damaging(0.996) TCGA-R6-A6XG-01 19 31769762 31769762 C T TSHZ3 Missense_Mutation p.A313T 0.23 tolerated(0.43) benign(0.016) TCGA-R6-A6XG-01 19 3595872 3595872 C G TBXA2R Silent p.L282L 0.07 TCGA-R6-A6XG-01 19 36330497 36330497 G A NPHS1 Missense_Mutation p.P943L 0.08 deleterious(0.02) possibly_damaging(0.521) TCGA-R6-A6XG-01 19 36633589 36633589 C A CAPNS1 Missense_Mutation p.N93K 0.09 tolerated(0.08) benign(0.067) TCGA-R6-A6XG-01 19 37129824 37129824 C T ZNF461 Missense_Mutation p.G475S 0.24 deleterious(0.03) probably_damaging(1) TCGA-R6-A6XG-01 19 38126679 38126679 C T ZFP30 Missense_Mutation p.G255R 0.11 tolerated(0.06) probably_damaging(0.999) TCGA-R6-A6XG-01 19 39303571 39303571 G C LGALS4 5'UTR 0.07 TCGA-R6-A6XG-01 19 43234055 43234055 C T PSG3 Missense_Mutation p.R288Q 0.24 tolerated(0.45) benign(0.017) TCGA-R6-A6XG-01 19 43372351 43372351 C A PSG1 Missense_Mutation p.R382L 0.24 tolerated(0.85) benign(0.005) TCGA-R6-A6XG-01 19 43522939 43522939 A - PSG11 Frame_Shift_Del p.V231Afs*3 0.16 TCGA-R6-A6XG-01 19 43910475 43910475 C T TEX101 5'UTR 0.12 TCGA-R6-A6XG-01 19 47151905 47151905 C T DACT3 Nonsense_Mutation p.W575* 0.73 TCGA-R6-A6XG-01 19 51021420 51021420 G A LRRC4B Missense_Mutation p.T517M 0.44 deleterious(0.03) possibly_damaging(0.87) TCGA-R6-A6XG-01 19 52222984 52222984 G A HAS1 Silent p.Y59Y 0.31 TCGA-R6-A6XG-01 19 54483237 54483237 G A CACNG8 Missense_Mutation p.A162T 0.28 deleterious(0) probably_damaging(0.914) TCGA-R6-A6XG-01 19 56156513 56156513 G A ZNF581 Silent p.T192T 0.21 TCGA-R6-A6XG-01 19 57641839 57641839 A C USP29 Missense_Mutation p.K599T 0.25 deleterious(0.01) possibly_damaging(0.82) TCGA-R6-A6XG-01 19 58418970 58418970 T G ZNF417 3'UTR 0.13 TCGA-R6-A6XG-01 19 7620583 7620583 C T PNPLA6 Silent p.I1019I 0.31 TCGA-R6-A6XG-01 19 8152011 8152011 A G FBN3 Missense_Mutation p.V2235A 0.26 deleterious(0.03) possibly_damaging(0.491) TCGA-R6-A6XG-01 19 9059054 9059054 A C MUC16 Silent p.T9464T 0.39 TCGA-R6-A6XG-01 19 9491836 9491836 A C ZNF177 Missense_Mutation p.T277P 0.48 tolerated(0.11) benign(0) TCGA-R6-A6XG-01 1 104114006 104114007 - A AMY2B Intron 0.30 TCGA-R6-A6XG-01 1 108145687 108145687 T C VAV3 Missense_Mutation p.E705G 0.59 deleterious(0.01) probably_damaging(1) TCGA-R6-A6XG-01 1 1103288 1103288 C T MIR200A RNA 0.65 TCGA-R6-A6XG-01 1 12855855 12855855 C A PRAMEF1 Missense_Mutation p.L379I 0.46 deleterious(0) probably_damaging(0.99) TCGA-R6-A6XG-01 1 145416451 145416451 C T HFE2 Nonsense_Mutation p.Q266* 0.33 TCGA-R6-A6XG-01 1 154558301 154558301 G A ADAR Silent p.C1081C 0.46 TCGA-R6-A6XG-01 1 156884559 156884559 C T PEAR1 Missense_Mutation p.P1028L 0.08 deleterious(0) probably_damaging(0.999) TCGA-R6-A6XG-01 1 158152092 158152092 A T CD1D Missense_Mutation p.K200M 0.28 deleterious(0) benign(0.003) TCGA-R6-A6XG-01 1 158261014 158261014 A C CD1C Missense_Mutation p.D51A 0.08 deleterious(0) benign(0.286) TCGA-R6-A6XG-01 1 158637762 158637762 T C SPTA1 Missense_Mutation p.K642E 0.31 tolerated(0.16) possibly_damaging(0.734) TCGA-R6-A6XG-01 1 158815572 158815572 T C MNDA Silent p.L256L 0.26 TCGA-R6-A6XG-01 1 161494985 161494985 G A HSPA6 Silent p.T179T 0.34 TCGA-R6-A6XG-01 1 166818561 166818561 C T POGK Missense_Mutation p.R249W 0.24 deleterious(0.01) probably_damaging(0.982) TCGA-R6-A6XG-01 1 166990945 166990945 C A MAEL Missense_Mutation p.S386R 0.16 deleterious(0.03) benign(0.002) TCGA-R6-A6XG-01 1 175331871 175331871 C T TNR Missense_Mutation p.E928K 0.18 tolerated(0.38) benign(0.021) TCGA-R6-A6XG-01 1 177133539 177133539 A C ASTN1 Missense_Mutation p.F92V 0.29 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-R6-A6XG-01 1 186017922 186017922 A T HMCN1 Silent p.A2176A 0.18 TCGA-R6-A6XG-01 1 214625231 214625231 G T PTPN14 Missense_Mutation p.D87E 0.49 tolerated(0.08) probably_damaging(0.999) TCGA-R6-A6XG-01 1 224577491 224577491 C T WDR26 3'UTR 0.25 TCGA-R6-A6XG-01 1 228294529 228294529 C T MRPL55 Missense_Mutation p.E143K 0.52 tolerated(0.11) benign(0.141) TCGA-R6-A6XG-01 1 247013009 247013009 C T AHCTF1 Missense_Mutation p.R2109Q 0.28 deleterious(0.02) probably_damaging(1) TCGA-R6-A6XG-01 1 247464366 247464366 C T ZNF496 Missense_Mutation p.V407M 0.07 tolerated(0.07) possibly_damaging(0.888) TCGA-R6-A6XG-01 1 35580031 35580031 G A ZMYM1 Missense_Mutation p.R867Q 0.28 deleterious(0.05) probably_damaging(0.997) TCGA-R6-A6XG-01 1 38442611 38442611 T G SF3A3 Missense_Mutation p.N317T 0.07 tolerated(0.49) benign(0.034) TCGA-R6-A6XG-01 1 39800561 39800561 C T MACF1 Intron 0.40 TCGA-R6-A6XG-01 1 46738139 46738139 T C RAD54L Missense_Mutation p.C391R 0.07 deleterious(0.02) probably_damaging(0.999) TCGA-R6-A6XG-01 1 50666910 50666910 C T ELAVL4 3'UTR 0.25 TCGA-R6-A6XG-01 1 57258301 57258301 C T C1orf168 Missense_Mutation p.R62H 0.08 tolerated(0.6) benign(0) TCGA-R6-A6XG-01 1 6111615 6111615 A T KCNAB2 Missense_Mutation p.S7C 0.60 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-R6-A6XG-01 1 6291979 6291979 A C ICMT Missense_Mutation p.W219G 0.16 deleterious(0.01) probably_damaging(0.959) TCGA-R6-A6XG-01 1 75596421 75596421 A C LHX8 Intron 0.24 TCGA-R6-A6XG-01 1 75602808 75602808 C T LHX8 Silent p.D43D 0.25 TCGA-R6-A6XG-01 1 91978664 91978665 - TAGAGC CDC7 In_Frame_Ins p.E209_L210dup 0.10 TCGA-R6-A6XG-01 1 93101861 93101861 A - EVI5 Frame_Shift_Del p.F459Lfs*5 0.18 TCGA-R6-A6XG-01 20 2639430 2639430 A C IDH3B Silent p.S375S 0.34 TCGA-R6-A6XG-01 20 49446909 49446909 C G BCAS4 Missense_Mutation p.R116G 0.09 deleterious(0.01) possibly_damaging(0.619) TCGA-R6-A6XG-01 20 54579078 54579078 C T CBLN4 Silent p.T50T 0.17 TCGA-R6-A6XG-01 21 15710177 15710177 T C ABCC13 RNA 0.33 TCGA-R6-A6XG-01 21 33694247 33694247 G T URB1 Missense_Mutation p.T1783K 0.39 tolerated(0.13) benign(0.003) TCGA-R6-A6XG-01 21 35476088 35476088 C T SLC5A3 3'UTR 0.39 TCGA-R6-A6XG-01 21 44837639 44837639 C T SIK1 Missense_Mutation p.R587Q 0.38 deleterious(0) benign(0.357) TCGA-R6-A6XG-01 21 47552323 47552323 G T COL6A2 Missense_Mutation p.V973L 0.48 deleterious(0.03) possibly_damaging(0.724) TCGA-R6-A6XG-01 22 16279269 16279269 A T POTEH Missense_Mutation p.H318Q 0.09 tolerated(0.21) possibly_damaging(0.493) TCGA-R6-A6XG-01 22 23055612 23055612 C T IGLV3-21 Missense_Mutation p.T92I 0.52 deleterious(0.02) possibly_damaging(0.541) TCGA-R6-A6XG-01 22 25243762 25243762 G T SGSM1 Missense_Mutation p.A101S 0.19 tolerated(0.79) benign(0.018) TCGA-R6-A6XG-01 22 26231269 26231269 T C MYO18B Silent p.L1023L 0.68 TCGA-R6-A6XG-01 22 28389392 28389392 C T TTC28 Missense_Mutation p.A1787T 0.48 deleterious(0.03) probably_damaging(0.998) TCGA-R6-A6XG-01 22 31089902 31089902 A G OSBP2 5'Flank 0.45 TCGA-R6-A6XG-01 22 33712229 33712229 C T LARGE Silent p.Q431Q 0.42 TCGA-R6-A6XG-01 22 51159738 51159738 G A SHANK3 Silent p.P1175P 0.37 TCGA-R6-A6XG-01 2 133402990 133402990 G A GPR39 Silent p.P391P 0.27 TCGA-R6-A6XG-01 2 140989403 140989403 G A LRP1B 3'UTR 0.44 TCGA-R6-A6XG-01 2 175742705 175742705 T A CHN1 Missense_Mutation p.T138S 0.55 tolerated(0.44) probably_damaging(0.952) TCGA-R6-A6XG-01 2 182541745 182541745 C G NEUROD1 3'UTR 0.11 TCGA-R6-A6XG-01 2 198950711 198950711 C T PLCL1 Missense_Mutation p.R824W 0.24 deleterious(0) probably_damaging(0.998) TCGA-R6-A6XG-01 2 210559473 210559473 C T MAP2 Missense_Mutation p.T860M 0.31 deleterious(0.01) probably_damaging(0.932) TCGA-R6-A6XG-01 2 210588377 210588377 A C MAP2 Intron 0.27 TCGA-R6-A6XG-01 2 217724762 217724762 A C TNP1 5'UTR 0.21 TCGA-R6-A6XG-01 2 224849554 224849554 C A SERPINE2 Missense_Mutation p.A279S 0.53 tolerated(0.19) benign(0.401) TCGA-R6-A6XG-01 2 233347591 233347591 T C ECEL1 Missense_Mutation p.K552R 0.17 tolerated(0.17) benign(0.006) TCGA-R6-A6XG-01 2 234545575 234545575 A G UGT1A10 Missense_Mutation p.Y136C 0.08 tolerated(0.12) probably_damaging(0.997) TCGA-R6-A6XG-01 2 40341551 40341551 A C SLC8A1 3'Flank 0.27 TCGA-R6-A6XG-01 2 46414605 46414605 C A PRKCE 3'UTR 0.30 TCGA-R6-A6XG-01 2 50149314 50149314 G A NRXN1 Missense_Mutation p.T1471M 0.28 deleterious(0.02) probably_damaging(0.989) TCGA-R6-A6XG-01 2 56403059 56403059 A C RP11-481J13.1 Intron 0.34 TCGA-R6-A6XG-01 2 5836388 5836388 C T SOX11 3'UTR 0.50 TCGA-R6-A6XG-01 2 73777445 73777445 G A ALMS1 Missense_Mutation p.R3319K 0.09 probably_damaging(0.998) TCGA-R6-A6XG-01 2 79314759 79314759 T G REG1B 5'UTR 0.24 TCGA-R6-A6XG-01 2 96691728 96691728 G A GPAT2 Silent p.G396G 0.16 TCGA-R6-A6XG-01 2 99235748 99235748 T A MGAT4A 3'UTR 0.57 TCGA-R6-A6XG-01 3 111632384 111632384 C T PHLDB2 Silent p.D518D 0.15 TCGA-R6-A6XG-01 3 126139071 126139071 G A CCDC37 Missense_Mutation p.G361R 0.24 tolerated(0.7) benign(0.006) TCGA-R6-A6XG-01 3 132221270 132221270 A T DNAJC13 Silent p.L1558L 0.07 TCGA-R6-A6XG-01 3 138452210 138452210 G A PIK3CB Missense_Mutation p.T348I 0.20 tolerated(0.19) benign(0.094) TCGA-R6-A6XG-01 3 138739030 138739030 G A PRR23B Silent p.D158D 0.33 TCGA-R6-A6XG-01 3 138762947 138762947 G A PRR23C Silent p.A172A 0.55 TCGA-R6-A6XG-01 3 150459000 150459000 A T SIAH2 3'UTR 0.20 TCGA-R6-A6XG-01 3 183400576 183400576 T C KLHL24 3'UTR 0.34 TCGA-R6-A6XG-01 3 28364042 28364042 G T CMC1 3'UTR 0.37 TCGA-R6-A6XG-01 3 28566104 28566121 ATTAAAAGCTGGAGAATG - ZCWPW2 In_Frame_Del p.K332_C338delinsN 0.29 TCGA-R6-A6XG-01 3 32995849 32995849 G A CCR4 Missense_Mutation p.R312H 0.36 deleterious(0) probably_damaging(0.935) TCGA-R6-A6XG-01 3 46450981 46450981 A G CCRL2 3'UTR 0.13 TCGA-R6-A6XG-01 3 50363557 50363557 C A TUSC2 Missense_Mutation p.V110L 0.17 deleterious(0.04) probably_damaging(0.978) TCGA-R6-A6XG-01 3 55500855 55500855 T G WNT5A 3'UTR 0.38 TCGA-R6-A6XG-01 3 9519792 9519792 A C SETD5 3'UTR 0.13 TCGA-R6-A6XG-01 4 106763267 106763267 C T GSTCD Missense_Mutation p.L581F 0.35 tolerated(0.13) possibly_damaging(0.793) TCGA-R6-A6XG-01 4 110971055 110971055 A T ELOVL6 3'UTR 0.06 TCGA-R6-A6XG-01 4 122075707 122075707 T C TNIP3 Missense_Mutation p.K241R 0.36 deleterious(0) probably_damaging(0.996) TCGA-R6-A6XG-01 4 126402848 126402848 C T FAT4 Silent p.G4257G 0.49 TCGA-R6-A6XG-01 4 134073782 134073782 C T PCDH10 Silent p.S829S 0.38 TCGA-R6-A6XG-01 4 15437439 15437439 A C C1QTNF7 Missense_Mutation p.K31N 0.14 tolerated(0.1) possibly_damaging(0.677) TCGA-R6-A6XG-01 4 154702638 154702638 G A SFRP2 Missense_Mutation p.R285C 0.33 deleterious(0) probably_damaging(0.998) TCGA-R6-A6XG-01 4 156136382 156136382 A C NPY2R 3'UTR 0.36 TCGA-R6-A6XG-01 4 183600932 183600932 C T TENM3 Silent p.A480A 0.44 TCGA-R6-A6XG-01 4 3949033 3949033 T - FAM86EP RNA 0.14 TCGA-R6-A6XG-01 4 7056185 7056185 G T TADA2B Missense_Mutation p.A223S 0.32 tolerated(0.2) benign(0.363) TCGA-R6-A6XG-01 4 71555010 71555010 G A UTP3 Missense_Mutation p.D206N 0.14 deleterious(0.02) benign(0.242) TCGA-R6-A6XG-01 4 76857190 76857190 G A NAAA Intron 0.41 TCGA-R6-A6XG-01 4 79400668 79400668 G A FRAS1 Missense_Mutation p.G2747S 0.38 possibly_damaging(0.89) TCGA-R6-A6XG-01 4 95220738 95220738 G A HPGDS Missense_Mutation p.P165S 0.13 tolerated(0.12) benign(0.035) TCGA-R6-A6XG-01 5 140562945 140562945 G A PCDHB16 Missense_Mutation p.G271S 0.88 tolerated_low_confidence(0.6) benign(0.001) TCGA-R6-A6XG-01 5 140720764 140720764 C T PCDHGA2 Silent p.G742G 0.13 TCGA-R6-A6XG-01 5 140768647 140768647 C T PCDHGB4 Missense_Mutation p.T399M 0.37 deleterious(0) possibly_damaging(0.671) TCGA-R6-A6XG-01 5 140773787 140773787 C A PCDHGA8 Silent p.A469A 0.40 TCGA-R6-A6XG-01 5 173428210 173428210 A G C5orf47 Missense_Mutation p.T175A 0.12 deleterious(0) possibly_damaging(0.801) TCGA-R6-A6XG-01 5 178368370 178368370 G A ZNF454 5'UTR 0.24 TCGA-R6-A6XG-01 5 35876108 35876108 T G IL7R Silent p.P300P 0.83 TCGA-R6-A6XG-01 6 117859897 117859897 T G DCBLD1 Missense_Mutation p.L292R 0.09 deleterious(0.02) possibly_damaging(0.883) TCGA-R6-A6XG-01 6 123317873 123317873 C T CLVS2 5'UTR 0.38 TCGA-R6-A6XG-01 6 128304446 128304446 C G PTPRK Missense_Mutation p.D1116H 0.15 deleterious(0) possibly_damaging(0.882) TCGA-R6-A6XG-01 6 146720166 146720166 T G GRM1 Missense_Mutation p.V664G 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-R6-A6XG-01 6 160494982 160494982 A T IGF2R Missense_Mutation p.K1714I 0.19 tolerated(0.06) possibly_damaging(0.802) TCGA-R6-A6XG-01 6 169053815 169053815 G A SMOC2 Missense_Mutation p.V409M 0.31 deleterious(0.04) benign(0.025) TCGA-R6-A6XG-01 6 26466201 26466201 C T BTN2A1 Nonsense_Mutation p.R319* 0.39 TCGA-R6-A6XG-01 6 27278524 27278524 G A POM121L2 Missense_Mutation p.P476S 0.41 tolerated(0.1) benign(0.11) TCGA-R6-A6XG-01 6 31595606 31595606 G A PRRC2A Missense_Mutation p.R452Q 0.14 unknown(0) TCGA-R6-A6XG-01 6 350656 350656 A G DUSP22 Intron 0.25 TCGA-R6-A6XG-01 6 36198764 36198764 G A BRPF3 3'UTR 0.40 TCGA-R6-A6XG-01 6 39846262 39846262 G A DAAM2 Silent p.R481R 0.17 TCGA-R6-A6XG-01 6 46135472 46135472 T C ENPP5 Silent p.S176S 0.23 TCGA-R6-A6XG-01 6 56880028 56880028 C A BEND6 Silent p.L132L 0.20 TCGA-R6-A6XG-01 6 57037568 57037568 T C BAG2 Missense_Mutation p.S25P 0.55 deleterious(0.02) probably_damaging(0.938) TCGA-R6-A6XG-01 6 72967886 72967886 G T RIMS1 Missense_Mutation p.Q943H 0.25 deleterious(0.01) benign(0.012) TCGA-R6-A6XG-01 6 91266319 91266319 T A MAP3K7 Silent p.T169T 0.29 TCGA-R6-A6XG-01 6 99353423 99353423 A G FBXL4 Missense_Mutation p.Y328H 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-R6-A6XG-01 7 102113481 102113481 C T LRWD1 Silent p.I643I 0.06 TCGA-R6-A6XG-01 7 102964049 102964051 CTG - DNAJC2 In_Frame_Del p.A238del 0.41 TCGA-R6-A6XG-01 7 127231142 127231142 G T ARF5 Silent p.T152T 0.18 TCGA-R6-A6XG-01 7 133314798 133314798 G A EXOC4 Missense_Mutation p.G473E 0.27 deleterious(0.02) benign(0.079) TCGA-R6-A6XG-01 7 140710420 140710420 G A MRPS33 Missense_Mutation p.S5L 0.23 deleterious(0) probably_damaging(0.962) TCGA-R6-A6XG-01 7 14216370 14216370 A C DGKB Intron 0.23 TCGA-R6-A6XG-01 7 20199215 20199215 G C MACC1 Missense_Mutation p.P257A 0.27 deleterious(0.02) benign(0.059) TCGA-R6-A6XG-01 7 55233043 55233043 G A EGFR Missense_Mutation p.G598E 0.37 deleterious(0) possibly_damaging(0.865) TCGA-R6-A6XG-01 7 5997557 5997557 C T RSPH10B Missense_Mutation p.R254Q 0.12 tolerated(1) benign(0.003) TCGA-R6-A6XG-01 7 73791017 73791017 G A CLIP2 Silent p.K762K 0.22 TCGA-R6-A6XG-01 7 87507388 87507389 - A DBF4 Frame_Shift_Ins p.N25Kfs*11 0.43 TCGA-R6-A6XG-01 7 94052369 94052369 G A COL1A2 Missense_Mutation p.G835D 0.41 unknown(0) TCGA-R6-A6XG-01 8 109491236 109491236 C G EMC2 Missense_Mutation p.S235W 0.43 deleterious(0.01) possibly_damaging(0.686) TCGA-R6-A6XG-01 8 133090150 133090150 C T HHLA1 Missense_Mutation p.V368M 0.49 tolerated(0.2) benign(0.014) TCGA-R6-A6XG-01 8 133584607 133584607 T C LRRC6 Missense_Mutation p.S450G 0.13 tolerated(0.17) benign(0.002) TCGA-R6-A6XG-01 8 134145822 134145822 G A TG Silent p.E2702E 0.23 TCGA-R6-A6XG-01 8 135490915 135490915 G A ZFAT Missense_Mutation p.T1181M 0.13 tolerated(0.18) possibly_damaging(0.869) TCGA-R6-A6XG-01 8 139255257 139255257 T C FAM135B Silent p.G199G 0.04 TCGA-R6-A6XG-01 8 144898676 144898676 G A PUF60 3'UTR 0.28 TCGA-R6-A6XG-01 8 144942890 144942890 G A EPPK1 Missense_Mutation p.A1511V 0.25 benign(0.045) TCGA-R6-A6XG-01 8 2967710 2967710 G A CSMD1 Missense_Mutation p.T2193M 0.26 probably_damaging(0.999) TCGA-R6-A6XG-01 8 51449339 51449339 T C SNTG1 Silent p.S217S 0.25 TCGA-R6-A6XG-01 8 6372251 6372251 G C ANGPT2 Missense_Mutation p.R327G 0.22 deleterious(0.01) benign(0.356) TCGA-R6-A6XG-01 8 69434158 69434158 A T C8orf34 Missense_Mutation p.K297I 0.29 deleterious(0) probably_damaging(0.979) TCGA-R6-A6XG-01 8 77766811 77766811 C T ZFHX4 Silent p.L2552L 0.31 TCGA-R6-A6XG-01 8 97156073 97156073 C G GDF6 3'UTR 0.20 TCGA-R6-A6XG-01 9 101056109 101056109 C T GABBR2 Missense_Mutation p.R873Q 0.79 tolerated_low_confidence(0.1) benign(0.042) TCGA-R6-A6XG-01 9 131565639 131565639 C T TBC1D13 Silent p.Y218Y 0.79 TCGA-R6-A6XG-01 9 139699019 139699019 C A CCDC183 Missense_Mutation p.N244K 0.75 deleterious(0.04) possibly_damaging(0.853) TCGA-R6-A6XG-01 9 17457615 17457615 G A CNTLN Missense_Mutation p.E1070K 0.25 tolerated(0.35) probably_damaging(0.972) TCGA-R6-A6XG-01 9 17747117 17747117 C T SH3GL2 Silent p.F33F 0.36 TCGA-R6-A6XG-01 9 43816807 43816807 G T CNTNAP3B Missense_Mutation p.D305Y 0.50 deleterious(0.01) probably_damaging(0.935) TCGA-R6-A6XG-01 9 80858446 80858446 C T CEP78 Silent p.D224D 0.25 TCGA-R6-A6XG-01 9 91605783 91605783 G A C9orf47 5'Flank 0.36 TCGA-R6-A6XG-01 9 98729016 98729016 C A ERCC6L2 3'UTR 0.44 TCGA-R6-A6XG-01 X 100668459 100668459 C T HNRNPH2 3'UTR 0.76 TCGA-R6-A6XG-01 X 106845185 106845185 C A FRMPD3 Silent p.R1339R 0.73 TCGA-R6-A6XG-01 X 151143102 151143102 G C GABRE 5'UTR 0.94 TCGA-R6-A6XG-01 X 2407512 2407512 G A ZBED1 Missense_Mutation p.P417S 0.12 tolerated(0.13) probably_damaging(0.934) TCGA-R6-A6XG-01 X 37028698 37028698 C T FAM47C Missense_Mutation p.R739C 0.82 tolerated(0.1) probably_damaging(0.942) TCGA-R6-A6XG-01 X 47775683 47775683 C A ZNF81 Silent p.T546T 1.00 TCGA-R6-A6XG-01 X 50659505 50659505 G A BMP15 Silent p.P359P 0.18 TCGA-R6-A6XG-01 X 53600757 53600757 T A HUWE1 Missense_Mutation p.I2089F 0.39 probably_damaging(0.93) TCGA-R6-A6XG-01 X 6069501 6069501 G A NLGN4X Missense_Mutation p.R3W 0.74 deleterious_low_confidence(0.01) benign(0.116) TCGA-R6-A6XG-01 X 68061478 68061478 G T EFNB1 3'UTR 0.80 TCGA-R6-A6XG-01 X 85212893 85212893 T C CHM Missense_Mutation p.M303V 0.81 tolerated(0.33) benign(0.004) TCGA-R6-A6XG-01 X 90692659 90692659 T G PABPC5 3'UTR 0.81 TCGA-R6-A6XQ-01 10 105801271 105801271 T A COL17A1 Silent p.P859P 0.48 TCGA-R6-A6XQ-01 10 117884831 117884831 C T GFRA1 Missense_Mutation p.R224Q 0.54 deleterious(0) probably_damaging(1) TCGA-R6-A6XQ-01 10 27434569 27434569 T C YME1L1 Intron 0.32 TCGA-R6-A6XQ-01 10 46961895 46961895 G A SYT15 3'Flank 0.07 TCGA-R6-A6XQ-01 11 116730026 116730026 C T SIK3 Missense_Mutation p.R801H 0.15 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-R6-A6XQ-01 11 130275784 130275784 C T ADAMTS8 Missense_Mutation p.R780Q 0.23 tolerated(0.21) benign(0.023) TCGA-R6-A6XQ-01 11 14284473 14284473 C T RP11-21L19.1 RNA 0.35 TCGA-R6-A6XQ-01 11 18727656 18727656 C T IGSF22 Silent p.K1206K 0.47 TCGA-R6-A6XQ-01 11 3113730 3113730 G A OSBPL5 Missense_Mutation p.R731W 0.52 deleterious(0) benign(0.296) TCGA-R6-A6XQ-01 11 47600657 47600657 C T NDUFS3 Missense_Mutation p.A5V 0.08 tolerated(0.27) benign(0.001) TCGA-R6-A6XQ-01 11 55038133 55038133 G A TRIM48 3'UTR 0.68 TCGA-R6-A6XQ-01 11 65307271 65307271 G A LTBP3 Missense_Mutation p.A1156V 0.56 tolerated(0.59) benign(0.174) TCGA-R6-A6XQ-01 11 69490026 69490026 C T ORAOV1 5'UTR 0.90 TCGA-R6-A6XQ-01 11 78369591 78369591 G T TENM4 Missense_Mutation p.H2608N 0.58 deleterious(0.01) probably_damaging(0.987) TCGA-R6-A6XQ-01 12 119631589 119631589 C T HSPB8 Missense_Mutation p.P173S 0.27 deleterious(0) probably_damaging(1) TCGA-R6-A6XQ-01 12 123099634 123099637 GTAA - KNTC1 Splice_Site p.X1991_splice 0.31 TCGA-R6-A6XQ-01 12 124820115 124820115 C A NCOR2 Missense_Mutation p.S2060I 0.59 probably_damaging(0.956) TCGA-R6-A6XQ-01 12 132325284 132325284 G A MMP17 Missense_Mutation p.G197S 0.65 tolerated(0.54) benign(0.386) TCGA-R6-A6XQ-01 12 21926469 21926469 G A KCNJ8 Nonsense_Mutation p.R28* 0.64 TCGA-R6-A6XQ-01 12 49500756 49500756 C T LMBR1L Missense_Mutation p.E49K 0.12 deleterious(0.03) possibly_damaging(0.559) TCGA-R6-A6XQ-01 12 51214268 51214268 G T ATF1 3'UTR 0.32 TCGA-R6-A6XQ-01 12 52994916 52994916 C T KRT72 Silent p.L107L 0.15 TCGA-R6-A6XQ-01 12 80211231 80211231 A G PPP1R12A Silent p.A394A 0.17 TCGA-R6-A6XQ-01 14 67854146 67854146 A T PLEK2 Missense_Mutation p.L321H 0.93 deleterious(0) probably_damaging(1) TCGA-R6-A6XQ-01 15 58247233 58247233 G A ALDH1A2 3'UTR 0.47 TCGA-R6-A6XQ-01 15 65442912 65442912 A T CLPX 3'UTR 0.22 TCGA-R6-A6XQ-01 15 73635991 73635991 C T HCN4 Missense_Mutation p.R315H 0.20 deleterious(0) unknown(0) TCGA-R6-A6XQ-01 15 78921536 78921536 C T CHRNB4 Missense_Mutation p.E371K 0.22 tolerated(0.63) benign(0.025) TCGA-R6-A6XQ-01 16 1254250 1254250 C T CACNA1H Missense_Mutation p.A748V 0.36 tolerated(0.39) benign(0.006) TCGA-R6-A6XQ-01 16 3097523 3097523 G A MMP25 Silent p.A69A 0.62 TCGA-R6-A6XQ-01 16 72984827 72984827 G A ZFHX3 Silent p.G919G 0.40 TCGA-R6-A6XQ-01 16 74943462 74943462 C T WDR59 Missense_Mutation p.G527R 0.28 deleterious(0.02) probably_damaging(0.916) TCGA-R6-A6XQ-01 16 87678031 87678031 G A JPH3 Missense_Mutation p.A184T 0.53 tolerated(0.31) benign(0.009) TCGA-R6-A6XQ-01 16 90128361 90128361 C T PRDM7 Missense_Mutation p.E284K 0.17 tolerated(0.13) benign(0.005) TCGA-R6-A6XQ-01 17 30661542 30661542 G T C17orf75 Missense_Mutation p.H273N 0.21 tolerated(0.39) benign(0.002) TCGA-R6-A6XQ-01 17 47794910 47794910 G A FAM117A Missense_Mutation p.A292V 0.08 tolerated(0.16) benign(0.057) TCGA-R6-A6XQ-01 17 49059942 49059942 G A SPAG9 Silent p.V1060V 0.43 TCGA-R6-A6XQ-01 17 6386932 6386932 G A PITPNM3 Silent p.V164V 0.23 TCGA-R6-A6XQ-01 17 74004033 74004033 G A EVPL Silent p.A1751A 0.60 TCGA-R6-A6XQ-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.94 deleterious(0) probably_damaging(1) TCGA-R6-A6XQ-01 18 50866153 50866153 G A DCC Nonsense_Mutation p.W745* 0.40 TCGA-R6-A6XQ-01 19 13869785 13869785 C T CCDC130 Missense_Mutation p.R121C 0.85 deleterious(0) probably_damaging(1) TCGA-R6-A6XQ-01 19 30312651 30312651 A G CCNE1 Missense_Mutation p.H211R 0.20 tolerated(0.09) benign(0.02) TCGA-R6-A6XQ-01 19 47960696 47960696 C T SLC8A2 Silent p.P277P 0.75 TCGA-R6-A6XQ-01 19 49299602 49299602 G A BCAT2 Intron 0.06 TCGA-R6-A6XQ-01 19 53994704 53994704 C T ZNF813 Silent p.T406T 0.22 TCGA-R6-A6XQ-01 19 56154467 56154467 C T ZNF580 3'UTR 0.27 TCGA-R6-A6XQ-01 19 58565250 58565250 G A ZSCAN1 Missense_Mutation p.R353Q 0.57 tolerated(0.16) possibly_damaging(0.625) TCGA-R6-A6XQ-01 1 10709147 10709147 G A CASZ1 Silent p.D1046D 0.17 TCGA-R6-A6XQ-01 1 161166327 161166327 G A ADAMTS4 Intron 0.37 TCGA-R6-A6XQ-01 1 16266422 16266422 C T SPEN 3'UTR 0.21 TCGA-R6-A6XQ-01 1 17084043 17084043 C G MST1L RNA 0.05 TCGA-R6-A6XQ-01 1 20474883 20474883 G A PLA2G2F Missense_Mutation p.A209T 0.29 tolerated_low_confidence(0.71) benign(0.001) TCGA-R6-A6XQ-01 1 21880566 21880566 G A ALPL 5'UTR 0.12 TCGA-R6-A6XQ-01 1 225611623 225611623 T C LBR Missense_Mutation p.N52S 0.16 tolerated(1) benign(0.011) TCGA-R6-A6XQ-01 1 228494222 228494222 C T OBSCN Missense_Mutation p.P4894S 0.12 possibly_damaging(0.546) TCGA-R6-A6XQ-01 1 236918342 236918342 G T ACTN2 Missense_Mutation p.Q666H 0.22 tolerated(0.1) benign(0.215) TCGA-R6-A6XQ-01 1 46662690 46662690 G A POMGNT1 Nonsense_Mutation p.R63* 0.17 TCGA-R6-A6XQ-01 1 86622207 86622207 G A COL24A1 5'UTR 0.87 TCGA-R6-A6XQ-01 20 23345574 23345577 GAGA - GZF1 Frame_Shift_Del p.R187Pfs*18 0.19 TCGA-R6-A6XQ-01 20 30584665 30584665 G A XKR7 Missense_Mutation p.R382H 0.48 tolerated(0.51) benign(0.015) TCGA-R6-A6XQ-01 20 36718839 36718839 T C RPRD1B 3'UTR 0.11 TCGA-R6-A6XQ-01 20 42788997 42788997 G A JPH2 Missense_Mutation p.R144C 0.30 deleterious(0) probably_damaging(0.998) TCGA-R6-A6XQ-01 20 51871739 51871739 A T TSHZ2 Missense_Mutation p.K581M 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-R6-A6XQ-01 20 52779343 52779343 G T CYP24A1 Missense_Mutation p.F301L 0.21 tolerated(0.3) benign(0.088) TCGA-R6-A6XQ-01 22 24718253 24718253 C T SPECC1L Silent p.N435N 0.46 TCGA-R6-A6XQ-01 22 30736220 30736220 C T SF3A1 Missense_Mutation p.R447H 0.58 tolerated(0.12) probably_damaging(0.994) TCGA-R6-A6XQ-01 22 40074028 40074028 G A CACNA1I Missense_Mutation p.R1657Q 0.15 deleterious(0) possibly_damaging(0.553) TCGA-R6-A6XQ-01 2 107040824 107040824 C T RGPD3 Missense_Mutation p.S1200N 0.53 deleterious(0) possibly_damaging(0.756) TCGA-R6-A6XQ-01 2 11767137 11767137 G A GREB1 Silent p.T1452T 0.24 TCGA-R6-A6XQ-01 2 120236440 120236440 C T SCTR Missense_Mutation p.R83Q 0.35 tolerated(0.79) benign(0.002) TCGA-R6-A6XQ-01 2 122493190 122493190 C T NIFK Missense_Mutation p.R81K 0.34 tolerated(1) benign(0.009) TCGA-R6-A6XQ-01 2 128477225 128477225 C - WDR33 Frame_Shift_Del p.E792Rfs*10 0.12 TCGA-R6-A6XQ-01 2 132912337 132912337 C T ANKRD30BL Missense_Mutation p.G171D 0.50 tolerated(0.3) benign(0.091) TCGA-R6-A6XQ-01 2 133618112 133618112 T A NCKAP5 Missense_Mutation p.I254F 0.45 deleterious(0) possibly_damaging(0.66) TCGA-R6-A6XQ-01 2 141598621 141598621 T C LRP1B Silent p.S1660S 0.45 TCGA-R6-A6XQ-01 2 165986560 165986560 G A SCN3A Missense_Mutation p.R938C 0.41 deleterious(0) probably_damaging(0.999) TCGA-R6-A6XQ-01 2 166018865 166018865 C G SCN3A Missense_Mutation p.L328F 0.39 deleterious(0.02) benign(0.003) TCGA-R6-A6XQ-01 2 173679105 173679105 C A RAPGEF4 Missense_Mutation p.S132R 0.28 tolerated(0.24) benign(0.049) TCGA-R6-A6XQ-01 2 192255108 192255108 C T MYO1B Silent p.N624N 0.37 TCGA-R6-A6XQ-01 2 208986573 208986573 G C CRYGD Missense_Mutation p.R117G 0.36 deleterious(0.01) benign(0.362) TCGA-R6-A6XQ-01 2 42670502 42670502 G T KCNG3 3'UTR 0.17 TCGA-R6-A6XQ-01 2 68546496 68546496 C T CNRIP1 Missense_Mutation p.A13T 0.64 deleterious(0.05) possibly_damaging(0.469) TCGA-R6-A6XQ-01 2 68962277 68962277 G A ARHGAP25 5'UTR 0.41 TCGA-R6-A6XQ-01 2 80529687 80529687 C G LRRTM1 Missense_Mutation p.E420Q 0.23 tolerated(0.34) possibly_damaging(0.749) TCGA-R6-A6XQ-01 2 86980658 86980658 C T RMND5A Silent p.V166V 0.29 TCGA-R6-A6XQ-01 3 142680564 142680564 C T PAQR9 3'UTR 0.16 TCGA-R6-A6XQ-01 3 196751299 196751299 A G MFI2 Missense_Mutation p.I121T 0.10 deleterious(0) possibly_damaging(0.474) TCGA-R6-A6XQ-01 3 41266100 41266100 T G CTNNB1 Missense_Mutation p.S33A 0.47 deleterious(0) possibly_damaging(0.847) TCGA-R6-A6XQ-01 3 46401261 46401261 G T CCR2 Silent p.V345V 0.53 TCGA-R6-A6XQ-01 3 53907132 53907132 T C ACTR8 Missense_Mutation p.H363R 0.29 tolerated(0.72) probably_damaging(0.996) TCGA-R6-A6XQ-01 3 55500646 55500646 G C WNT5A 3'UTR 0.34 TCGA-R6-A6XQ-01 3 57327776 57327776 T A ASB14 5'Flank 0.50 TCGA-R6-A6XQ-01 4 187455160 187455160 G C MTNR1A Missense_Mutation p.L246V 0.56 tolerated(0.07) benign(0.041) TCGA-R6-A6XQ-01 5 140050622 140050622 C T WDR55 3'UTR 0.32 TCGA-R6-A6XQ-01 5 140605202 140605202 G A PCDHB14 Missense_Mutation p.V709M 0.25 deleterious_low_confidence(0) possibly_damaging(0.835) TCGA-R6-A6XQ-01 5 150945577 150945577 G T FAT2 Missense_Mutation p.F972L 0.58 probably_damaging(0.999) TCGA-R6-A6XQ-01 5 3600242 3600242 G A IRX1 Missense_Mutation p.V394I 0.64 deleterious(0.03) benign(0.079) TCGA-R6-A6XQ-01 6 116784539 116784539 C A FAM26F Missense_Mutation p.L207M 0.15 deleterious(0.01) probably_damaging(1) TCGA-R6-A6XQ-01 6 42227217 42227217 G A TRERF1 Missense_Mutation p.P710L 0.85 deleterious(0) possibly_damaging(0.713) TCGA-R6-A6XQ-01 6 46133249 46133249 G C ENPP5 Missense_Mutation p.T294S 0.18 tolerated(0.08) probably_damaging(0.964) TCGA-R6-A6XQ-01 6 50681635 50681635 C T TFAP2D 5'UTR 0.26 TCGA-R6-A6XQ-01 7 116759698 116759698 A T ST7 Silent p.G106G 0.40 TCGA-R6-A6XQ-01 7 20685713 20685713 C A ABCB5 Silent p.S311S 0.24 TCGA-R6-A6XQ-01 7 41729394 41729394 G A INHBA Missense_Mutation p.R379W 0.67 deleterious(0) probably_damaging(0.995) TCGA-R6-A6XQ-01 8 110465003 110465003 A - PKHD1L1 Frame_Shift_Del p.K2189Nfs*27 0.17 TCGA-R6-A6XQ-01 8 131861901 131861901 C T ADCY8 Missense_Mutation p.V787I 0.46 tolerated(0.33) benign(0.003) TCGA-R6-A6XQ-01 8 139715569 139715569 G A COL22A1 Missense_Mutation p.P847S 0.36 probably_damaging(0.947) TCGA-R6-A6XQ-01 8 1953982 1953982 C T KBTBD11 3'UTR 0.30 TCGA-R6-A6XQ-01 8 77765710 77765710 C T ZFHX4 Nonsense_Mutation p.R2185* 0.27 TCGA-R6-A6XQ-01 9 102730928 102730928 C G STX17 Silent p.P294P 0.73 TCGA-R6-A6XQ-01 9 121930059 121930059 C T BRINP1 Missense_Mutation p.S530N 0.33 deleterious(0) possibly_damaging(0.827) TCGA-R6-A6XQ-01 9 136559399 136559399 C A SARDH Silent p.P634P 0.51 TCGA-R6-A6XQ-01 9 139889896 139889896 G A CLIC3 Silent p.P89P 0.50 TCGA-R6-A6XQ-01 X 148078662 148078662 G T AFF2 3'UTR 0.93 TCGA-R6-A6XQ-01 X 54951451 54951451 G A TRO Missense_Mutation p.D479N 0.17 deleterious(0.03) unknown(0) TCGA-R6-A6XQ-01 X 591584 591584 G A SHOX 5'UTR 0.92 TCGA-R6-A6XQ-01 X 73045040 73045040 G T XIST RNA 0.21 TCGA-R6-A6Y0-01 10 104139119 104139119 G C GBF1 Missense_Mutation p.E1524Q 0.10 tolerated(0.09) benign(0.115) TCGA-R6-A6Y0-01 10 13824953 13824953 A G FRMD4A Missense_Mutation p.F118S 0.27 deleterious(0) probably_damaging(0.999) TCGA-R6-A6Y0-01 10 22690089 22690089 G C SPAG6 Splice_Site p.X400_splice 0.19 TCGA-R6-A6Y0-01 10 30658036 30658036 C A AL161651.1 5'Flank 0.08 TCGA-R6-A6Y0-01 10 32096093 32096093 A G ARHGAP12 3'UTR 0.08 TCGA-R6-A6Y0-01 10 45498857 45498857 C G ZNF22 Nonsense_Mutation p.S14* 0.14 TCGA-R6-A6Y0-01 10 73572558 73572558 C A CDH23 Missense_Mutation p.P942T 0.35 deleterious_low_confidence(0) benign(0.02) TCGA-R6-A6Y0-01 10 74992864 74992864 G T FAM149B1 Missense_Mutation p.S432I 0.26 deleterious(0) probably_damaging(0.991) TCGA-R6-A6Y0-01 10 75549245 75549245 G C ZSWIM8 Missense_Mutation p.G193A 0.22 tolerated(0.46) probably_damaging(0.996) TCGA-R6-A6Y0-01 10 93038654 93038654 G A PCGF5 3'UTR 0.09 TCGA-R6-A6Y0-01 11 100909685 100909685 A C PGR 3'UTR 0.18 TCGA-R6-A6Y0-01 11 104874037 104874037 T C CASP5 Silent p.E182E 0.09 TCGA-R6-A6Y0-01 11 111835289 111835289 A G DIXDC1 Missense_Mutation p.Y26C 0.27 deleterious(0) probably_damaging(1) TCGA-R6-A6Y0-01 11 111945439 111945439 T G C11orf57 5'UTR 0.10 TCGA-R6-A6Y0-01 11 130332588 130332588 C A ADAMTS15 Missense_Mutation p.F485L 0.16 tolerated(0.53) probably_damaging(0.996) TCGA-R6-A6Y0-01 11 18057536 18057536 G C TPH1 Missense_Mutation p.L91V 0.15 tolerated(0.51) benign(0) TCGA-R6-A6Y0-01 11 18388124 18388124 G C GTF2H1 3'UTR 0.11 TCGA-R6-A6Y0-01 11 22399322 22399322 G A SLC17A6 3'UTR 0.08 TCGA-R6-A6Y0-01 11 26619955 26619955 G C ANO3 Silent p.L497L 0.12 TCGA-R6-A6Y0-01 11 31329280 31329280 G C DCDC1 Missense_Mutation p.L114V 0.14 tolerated(0.77) benign(0.371) TCGA-R6-A6Y0-01 11 46392886 46392886 C G DGKZ Missense_Mutation p.F386L 0.10 deleterious(0) probably_damaging(0.921) TCGA-R6-A6Y0-01 11 49168298 49168298 A C FOLH1 3'UTR 0.21 TCGA-R6-A6Y0-01 11 4944886 4944886 G A OR51G1 Silent p.L228L 0.25 TCGA-R6-A6Y0-01 11 5080750 5080750 C T OR52E2 Silent p.V36V 0.15 TCGA-R6-A6Y0-01 11 5142536 5142536 G A OR52A4 RNA 0.18 TCGA-R6-A6Y0-01 11 5275627 5275627 A C HBG2 Silent p.T70T 0.10 TCGA-R6-A6Y0-01 11 55735082 55735082 T G OR10AG1 Missense_Mutation p.K286N 0.10 deleterious(0.01) possibly_damaging(0.454) TCGA-R6-A6Y0-01 11 56237478 56237478 A C OR5M3 Missense_Mutation p.F166V 0.14 deleterious(0) probably_damaging(0.997) TCGA-R6-A6Y0-01 11 59856281 59856281 C G MS4A2 Missense_Mutation p.Q15E 0.07 tolerated(0.1) benign(0.036) TCGA-R6-A6Y0-01 11 62491164 62491164 G T HNRNPUL2 Missense_Mutation p.D262E 0.12 deleterious(0) possibly_damaging(0.883) TCGA-R6-A6Y0-01 11 86152470 86152470 C T ME3 Missense_Mutation p.A556T 0.17 deleterious(0.02) benign(0.403) TCGA-R6-A6Y0-01 12 10168340 10168340 T A CLEC12B Intron 0.05 TCGA-R6-A6Y0-01 12 111336860 111336860 G A CCDC63 Missense_Mutation p.A425T 0.11 tolerated(0.37) benign(0.213) TCGA-R6-A6Y0-01 12 120654330 120654330 C G PXN Intron 0.10 TCGA-R6-A6Y0-01 12 123489971 123489971 C A PITPNM2 Missense_Mutation p.K256N 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-R6-A6Y0-01 12 129190255 129190255 G T TMEM132C Silent p.V914V 0.19 TCGA-R6-A6Y0-01 12 130387841 130387841 G A TMEM132D Missense_Mutation p.P15L 0.14 tolerated(0.23) benign(0.021) TCGA-R6-A6Y0-01 12 29659767 29659767 C T TMTC1 3'UTR 0.07 TCGA-R6-A6Y0-01 12 31135479 31135479 G A TSPAN11 Missense_Mutation p.G157R 0.08 deleterious(0.01) probably_damaging(1) TCGA-R6-A6Y0-01 12 32136172 32136172 T C KIAA1551 Silent p.A761A 0.11 TCGA-R6-A6Y0-01 12 41968187 41968187 A T PDZRN4 3'Flank 0.09 TCGA-R6-A6Y0-01 12 54849903 54849905 AGA - GTSF1 3'UTR 0.16 TCGA-R6-A6Y0-01 12 57858936 57858936 G T GLI1 Silent p.G144G 0.12 TCGA-R6-A6Y0-01 12 65632541 65632541 G A LEMD3 Missense_Mutation p.R623H 0.14 deleterious(0) probably_damaging(1) TCGA-R6-A6Y0-01 12 7867910 7867910 A G DPPA3 Missense_Mutation p.R72G 0.13 tolerated(0.06) benign(0.025) TCGA-R6-A6Y0-01 12 81648675 81648675 G A ACSS3 Missense_Mutation p.V679I 0.15 tolerated(1) benign(0.001) TCGA-R6-A6Y0-01 12 9231911 9231911 C G A2M Missense_Mutation p.L1016F 0.04 deleterious(0) probably_damaging(0.998) TCGA-R6-A6Y0-01 13 36900829 36900829 C A SPG20 Missense_Mutation p.D391Y 0.20 deleterious(0.01) possibly_damaging(0.594) TCGA-R6-A6Y0-01 13 43181713 43181713 G C TNFSF11 3'UTR 0.10 TCGA-R6-A6Y0-01 13 92408605 92408605 A G GPC5 Missense_Mutation p.Q404R 0.11 tolerated(0.5) possibly_damaging(0.47) TCGA-R6-A6Y0-01 13 92408660 92408660 A C GPC5 Missense_Mutation p.E422D 0.13 tolerated(0.05) benign(0.012) TCGA-R6-A6Y0-01 14 101200909 101200909 G A DLK1 Silent p.P276P 0.17 TCGA-R6-A6Y0-01 14 102452280 102452280 G C DYNC1H1 Missense_Mutation p.G573A 0.15 benign(0.162) TCGA-R6-A6Y0-01 14 24612685 24612685 T C PSME2 Missense_Mutation p.H218R 0.13 deleterious(0) benign(0.2) TCGA-R6-A6Y0-01 14 51187305 51187305 C G RP11-248J18.3 3'Flank 0.10 TCGA-R6-A6Y0-01 14 80328055 80328055 G C NRXN3 Silent p.V978V 0.14 TCGA-R6-A6Y0-01 14 86092339 86092339 A C FLRT2 3'UTR 0.15 TCGA-R6-A6Y0-01 14 95906111 95906111 G A SYNE3 Missense_Mutation p.A695V 0.11 deleterious(0) possibly_damaging(0.864) TCGA-R6-A6Y0-01 15 52970255 52970255 G A FAM214A 5'UTR 0.16 TCGA-R6-A6Y0-01 15 60644625 60644625 C G ANXA2 Missense_Mutation p.W231C 0.12 deleterious(0.05) probably_damaging(0.981) TCGA-R6-A6Y0-01 15 63133442 63133442 G C TLN2 3'UTR 0.13 TCGA-R6-A6Y0-01 15 64066900 64066900 C T HERC1 Missense_Mutation p.R308H 0.10 possibly_damaging(0.883) TCGA-R6-A6Y0-01 15 78577642 78577642 C T WDR61 Silent p.T263T 0.19 TCGA-R6-A6Y0-01 15 88472545 88472545 C A NTRK3 Silent p.L670L 0.18 TCGA-R6-A6Y0-01 16 2325958 2325960 GGG CGGT ABCA3 3'UTR 0.32 TCGA-R6-A6Y0-01 16 30964759 30964759 T A ORAI3 Missense_Mutation p.L161H 0.12 deleterious(0) probably_damaging(1) TCGA-R6-A6Y0-01 16 31497501 31497501 T C SLC5A2 Missense_Mutation p.F160S 0.16 deleterious(0.02) probably_damaging(1) TCGA-R6-A6Y0-01 16 602930 602930 A G CAPN15 Missense_Mutation p.N991S 0.10 deleterious(0.01) probably_damaging(0.997) TCGA-R6-A6Y0-01 16 68912159 68912159 C A TANGO6 Missense_Mutation p.L424I 0.21 deleterious(0.03) benign(0.244) TCGA-R6-A6Y0-01 16 69184518 69184518 A C CIRH1A Missense_Mutation p.S273R 0.08 tolerated(0.49) benign(0.025) TCGA-R6-A6Y0-01 16 71101268 71101268 T A HYDIN Missense_Mutation p.Q667L 0.14 benign(0.116) TCGA-R6-A6Y0-01 17 16722167 16722167 G A AC022596.6 RNA 0.06 TCGA-R6-A6Y0-01 17 16722629 16722629 C T AC022596.6 RNA 0.08 TCGA-R6-A6Y0-01 17 17714648 17714649 - TGTGTGTATCGAGC RAI1 3'UTR 0.21 TCGA-R6-A6Y0-01 17 21911506 21911506 T G RP11-744K17.9 RNA 0.14 TCGA-R6-A6Y0-01 17 32966023 32966023 G A TMEM132E 3'UTR 0.15 TCGA-R6-A6Y0-01 17 33266647 33266647 C T CCT6B Missense_Mutation p.E352K 0.12 deleterious(0.01) benign(0.393) TCGA-R6-A6Y0-01 17 34122276 34122276 C T MMP28 Missense_Mutation p.A36T 0.11 deleterious(0.01) possibly_damaging(0.813) TCGA-R6-A6Y0-01 17 39341472 39341472 T A KRTAP4-1 5'UTR 0.17 TCGA-R6-A6Y0-01 17 41180521 41180521 G A RND2 Missense_Mutation p.V170I 0.14 tolerated(0.14) possibly_damaging(0.619) TCGA-R6-A6Y0-01 17 4594211 4594211 C G PELP1 Missense_Mutation p.W131S 0.16 probably_damaging(0.999) TCGA-R6-A6Y0-01 17 49337935 49337935 C G UTP18 5'UTR 0.17 TCGA-R6-A6Y0-01 17 56280444 56280444 T C EPX Missense_Mutation p.Y571H 0.18 deleterious(0) probably_damaging(0.999) TCGA-R6-A6Y0-01 17 7127658 7127658 C T ACADVL Silent p.S540S 0.08 TCGA-R6-A6Y0-01 17 72233537 72233537 C G TTYH2 Missense_Mutation p.F173L 0.11 tolerated(0.16) benign(0.021) TCGA-R6-A6Y0-01 17 7577017 7577017 A C TP53 Splice_Site p.X307_splice 0.41 TCGA-R6-A6Y0-01 17 8378001 8378001 C T MYH10 3'UTR 0.32 TCGA-R6-A6Y0-01 18 48575671 48575671 C G SMAD4 Nonsense_Mutation p.S144* 0.15 TCGA-R6-A6Y0-01 18 67992971 67992971 G C SOCS6 Missense_Mutation p.R356T 0.12 deleterious(0.01) possibly_damaging(0.488) TCGA-R6-A6Y0-01 19 12574611 12574611 C T ZNF709 3'UTR 0.25 TCGA-R6-A6Y0-01 19 15302440 15302440 C T NOTCH3 Silent p.E277E 0.12 TCGA-R6-A6Y0-01 19 15342090 15342090 G A EPHX3 Silent p.D149D 0.18 TCGA-R6-A6Y0-01 19 1802525 1802525 G A ATP8B3 Missense_Mutation p.R342C 0.09 deleterious(0) probably_damaging(1) TCGA-R6-A6Y0-01 19 19545876 19545876 C - GATAD2A Intron 0.16 TCGA-R6-A6Y0-01 19 21493355 21493355 C T ZNF708 Silent p.Q26Q 0.17 TCGA-R6-A6Y0-01 19 33871578 33871578 C A CEBPG 3'UTR 0.15 TCGA-R6-A6Y0-01 19 41889665 41889665 G A TMEM91 Missense_Mutation p.A136T 0.12 tolerated(0.27) benign(0.02) TCGA-R6-A6Y0-01 19 49110305 49110305 G A SPACA4 Missense_Mutation p.V24I 0.11 tolerated(1) benign(0.004) TCGA-R6-A6Y0-01 19 50155769 50155769 G A SCAF1 Missense_Mutation p.G708D 0.26 unknown(0) TCGA-R6-A6Y0-01 19 51328969 51328969 G A KLK15 3'Flank 0.41 TCGA-R6-A6Y0-01 19 54781740 54781740 C T LILRB2 Intron 0.17 TCGA-R6-A6Y0-01 19 57066294 57066294 T A ZFP28 Missense_Mutation p.S714T 0.42 tolerated(0.11) probably_damaging(0.998) TCGA-R6-A6Y0-01 19 58352658 58352658 C G ZNF587B Missense_Mutation p.P206A 0.16 tolerated(1) benign(0.081) TCGA-R6-A6Y0-01 19 8665990 8665990 G T ADAMTS10 Missense_Mutation p.T211N 0.16 tolerated(0.49) benign(0.001) TCGA-R6-A6Y0-01 1 10132108 10132108 G C UBE4B Missense_Mutation p.R16P 0.13 deleterious(0) possibly_damaging(0.453) TCGA-R6-A6Y0-01 1 101707069 101707069 T A S1PR1 3'UTR 0.08 TCGA-R6-A6Y0-01 1 115537701 115537701 T G SYCP1 3'UTR 0.16 TCGA-R6-A6Y0-01 1 12908235 12908235 G A HNRNPCL1 5'UTR 0.05 TCGA-R6-A6Y0-01 1 147380796 147380796 G A GJA8 Silent p.R238R 0.20 TCGA-R6-A6Y0-01 1 157811573 157811573 A C CD5L 5'UTR 0.12 TCGA-R6-A6Y0-01 1 158576639 158576639 T G OR10Z1 Missense_Mutation p.N137K 0.18 deleterious(0.03) benign(0.013) TCGA-R6-A6Y0-01 1 16803494 16803494 C G CROCCP3 RNA 0.18 TCGA-R6-A6Y0-01 1 171752987 171752987 G T METTL13 Missense_Mutation p.M87I 0.14 deleterious(0.01) possibly_damaging(0.658) TCGA-R6-A6Y0-01 1 173933252 173933252 C G RC3H1 Missense_Mutation p.D564H 0.20 deleterious(0.02) possibly_damaging(0.735) TCGA-R6-A6Y0-01 1 17592157 17592157 T C PADI3 Missense_Mutation p.I117T 0.33 deleterious(0) possibly_damaging(0.673) TCGA-R6-A6Y0-01 1 176564298 176564298 C T PAPPA2 Missense_Mutation p.R520W 0.09 deleterious(0.02) probably_damaging(0.912) TCGA-R6-A6Y0-01 1 176832502 176832502 A G ASTN1 3'UTR 0.16 TCGA-R6-A6Y0-01 1 185951416 185951416 C G HMCN1 Missense_Mutation p.S895R 0.11 probably_damaging(0.996) TCGA-R6-A6Y0-01 1 196695762 196695762 C A CFH Missense_Mutation p.T679K 0.21 deleterious(0) probably_damaging(0.995) TCGA-R6-A6Y0-01 1 215408174 215408174 G A KCNK2 Missense_Mutation p.G323R 0.06 deleterious(0.01) probably_damaging(0.982) TCGA-R6-A6Y0-01 1 222833629 222833629 C T MIA3 Nonsense_Mutation p.R1696* 0.16 TCGA-R6-A6Y0-01 1 57538009 57538009 C T DAB1 Missense_Mutation p.V129I 0.10 deleterious(0.03) benign(0.138) TCGA-R6-A6Y0-01 1 75072384 75072384 C A C1orf173 Missense_Mutation p.G464W 0.20 deleterious(0) probably_damaging(0.95) TCGA-R6-A6Y0-01 1 82409086 82409086 C A LPHN2 Nonsense_Mutation p.Y277* 0.15 TCGA-R6-A6Y0-01 20 20592046 20592046 G A RALGAPA2 Silent p.L571L 0.14 TCGA-R6-A6Y0-01 20 35743674 35743674 C T MROH8 Missense_Mutation p.V840I 0.28 tolerated(0.05) benign(0.059) TCGA-R6-A6Y0-01 20 43933251 43933251 G A MATN4 Missense_Mutation p.P87L 0.11 benign(0.138) TCGA-R6-A6Y0-01 20 55108439 55108439 C G FAM209B Silent p.L14L 0.14 TCGA-R6-A6Y0-01 21 15882762 15882762 C T SAMSN1 Missense_Mutation p.D212N 0.09 tolerated(0.14) probably_damaging(0.975) TCGA-R6-A6Y0-01 21 33687246 33687246 C T URB1 Missense_Mutation p.A2267T 0.08 tolerated(0.32) benign(0) TCGA-R6-A6Y0-01 21 35469945 35469945 G C SLC5A3 3'UTR 0.07 TCGA-R6-A6Y0-01 21 43187118 43187118 C G RIPK4 Silent p.V28V 0.20 TCGA-R6-A6Y0-01 21 44195473 44195473 G C PDE9A 3'UTR 0.31 TCGA-R6-A6Y0-01 21 47821471 47821471 G C PCNT Missense_Mutation p.E1600Q 0.15 possibly_damaging(0.727) TCGA-R6-A6Y0-01 22 22730801 22730801 T A IGLV5-45 Missense_Mutation p.I99N 0.07 tolerated(0.11) benign(0.005) TCGA-R6-A6Y0-01 22 24968088 24968088 G C SNRPD3 3'UTR 0.15 TCGA-R6-A6Y0-01 22 36556899 36556899 A C APOL3 Missense_Mutation p.F14C 0.09 possibly_damaging(0.759) TCGA-R6-A6Y0-01 22 41565565 41565565 A G EP300 Missense_Mutation p.T1411A 0.19 probably_damaging(0.998) TCGA-R6-A6Y0-01 22 41856377 41856377 G A PHF5A 3'UTR 0.11 TCGA-R6-A6Y0-01 2 101892930 101892930 C G RNF149 3'UTR 0.11 TCGA-R6-A6Y0-01 2 131672314 131672314 G - ARHGEF4 5'Flank 0.12 TCGA-R6-A6Y0-01 2 136482498 136482498 C T R3HDM1 3'UTR 0.12 TCGA-R6-A6Y0-01 2 168105269 168105269 A C XIRP2 Missense_Mutation p.K2456T 0.13 benign(0.023) TCGA-R6-A6Y0-01 2 188331737 188331737 T G TFPI Missense_Mutation p.I281L 0.16 deleterious(0.02) probably_damaging(0.956) TCGA-R6-A6Y0-01 2 192267361 192267361 C T MYO1B Nonsense_Mutation p.R825* 0.09 TCGA-R6-A6Y0-01 2 198268376 198268376 A T SF3B1 Nonsense_Mutation p.L551* 0.12 TCGA-R6-A6Y0-01 2 207833984 207833984 T C CPO Missense_Mutation p.Y317H 0.27 tolerated(0.51) benign(0.019) TCGA-R6-A6Y0-01 2 212566719 212566719 G A ERBB4 Missense_Mutation p.R488W 0.24 deleterious(0.02) benign(0.248) TCGA-R6-A6Y0-01 2 215593433 215593433 C G BARD1 Silent p.V767V 0.09 TCGA-R6-A6Y0-01 2 217724195 217724195 G A TNP1 3'UTR 0.38 TCGA-R6-A6Y0-01 2 227985836 227985836 C G COL4A4 Missense_Mutation p.G74A 0.39 probably_damaging(0.983) TCGA-R6-A6Y0-01 2 48026124 48026124 G C MSH6 Missense_Mutation p.K334N 0.09 deleterious(0.01) benign(0.384) TCGA-R6-A6Y0-01 2 48573460 48573460 C G FOXN2 Missense_Mutation p.A36G 0.09 deleterious(0.01) benign(0.223) TCGA-R6-A6Y0-01 2 48906575 48906575 G C STON1-GTF2A1L Missense_Mutation p.E1181D 0.13 deleterious(0) probably_damaging(0.943) TCGA-R6-A6Y0-01 2 5837534 5837534 C A SOX11 3'UTR 0.19 TCGA-R6-A6Y0-01 2 5838192 5838192 T G SOX11 3'UTR 0.17 TCGA-R6-A6Y0-01 2 74901691 74901691 T A SEMA4F Missense_Mutation p.C297S 0.19 deleterious(0) probably_damaging(0.999) TCGA-R6-A6Y0-01 2 86439743 86439743 C T MRPL35 3'UTR 0.07 TCGA-R6-A6Y0-01 2 89521289 89521289 G T IGKV2-28 Missense_Mutation p.P84T 0.12 deleterious(0) possibly_damaging(0.882) TCGA-R6-A6Y0-01 2 9666349 9666349 C G ADAM17 Missense_Mutation p.R215T 0.21 tolerated(0.13) benign(0.041) TCGA-R6-A6Y0-01 2 99720580 99720580 A G TSGA10 Missense_Mutation p.L154P 0.14 deleterious(0) probably_damaging(0.988) TCGA-R6-A6Y0-01 3 101369317 101369317 C G ZBTB11 3'UTR 0.13 TCGA-R6-A6Y0-01 3 111604363 111604363 C G PHLDB2 Intron 0.17 TCGA-R6-A6Y0-01 3 114026796 114026796 G A TIGIT Missense_Mutation p.G185R 0.10 tolerated(0.11) benign(0.115) TCGA-R6-A6Y0-01 3 118865547 118865547 G C C3orf30 Missense_Mutation p.D171H 0.17 deleterious(0.02) possibly_damaging(0.625) TCGA-R6-A6Y0-01 3 121207908 121207908 T C POLQ Silent p.R1290R 0.13 TCGA-R6-A6Y0-01 3 127387367 127387367 G T PODXL2 Silent p.G430G 0.13 TCGA-R6-A6Y0-01 3 14528542 14528542 C G SLC6A6 3'UTR 0.14 TCGA-R6-A6Y0-01 3 146311842 146311842 G C PLSCR5 Missense_Mutation p.I106M 0.07 deleterious(0.01) benign(0.424) TCGA-R6-A6Y0-01 3 179095183 179095183 G A MFN1 Missense_Mutation p.E426K 0.13 deleterious(0.02) benign(0.053) TCGA-R6-A6Y0-01 3 38318435 38318435 C A SLC22A13 Nonsense_Mutation p.S460* 0.24 TCGA-R6-A6Y0-01 3 51746583 51746583 C - GRM2 Frame_Shift_Del p.R183Afs*44 0.14 TCGA-R6-A6Y0-01 3 51982404 51982404 G A PARP3 Missense_Mutation p.E511K 0.13 tolerated(0.72) benign(0.001) TCGA-R6-A6Y0-01 3 5244667 5244667 G A EDEM1 Missense_Mutation p.G292E 0.18 deleterious(0) probably_damaging(1) TCGA-R6-A6Y0-01 3 57547244 57547244 G C PDE12 3'UTR 0.23 TCGA-R6-A6Y0-01 3 70017217 70017217 T C MITF 3'UTR 0.15 TCGA-R6-A6Y0-01 4 113435743 113435743 G A NEUROG2 3'UTR 0.19 TCGA-R6-A6Y0-01 4 123249339 123249339 A G KIAA1109 Silent p.S3692S 0.12 TCGA-R6-A6Y0-01 4 13338995 13338995 A C HSP90AB2P RNA 0.11 TCGA-R6-A6Y0-01 4 140812013 140812013 G A MAML3 Nonsense_Mutation p.R193* 0.16 TCGA-R6-A6Y0-01 4 155528013 155528013 G A FGG Missense_Mutation p.P325S 0.14 tolerated(0.21) benign(0.038) TCGA-R6-A6Y0-01 4 177071685 177071685 C T WDR17 Missense_Mutation p.L773F 0.12 deleterious(0) benign(0.026) TCGA-R6-A6Y0-01 4 177105910 177105910 A G SPATA4 3'UTR 0.25 TCGA-R6-A6Y0-01 4 17805701 17805701 T C DCAF16 Missense_Mutation p.I22V 0.19 tolerated_low_confidence(1) benign(0) TCGA-R6-A6Y0-01 4 20703776 20703776 A G PACRGL Intron 0.10 TCGA-R6-A6Y0-01 4 4304045 4304045 C G ZBTB49 Nonsense_Mutation p.S161* 0.15 TCGA-R6-A6Y0-01 4 53579529 53579529 G A SNORA26 RNA 0.13 TCGA-R6-A6Y0-01 4 6066624 6066624 C T JAKMIP1 Missense_Mutation p.E472K 0.29 deleterious(0.01) probably_damaging(0.943) TCGA-R6-A6Y0-01 4 79188042 79188042 G C FRAS1 Missense_Mutation p.E248Q 0.09 benign(0.021) TCGA-R6-A6Y0-01 4 85660182 85660183 - T WDFY3 Nonsense_Mutation p.Y2185* 0.08 TCGA-R6-A6Y0-01 4 88414816 88414816 T C SPARCL1 Missense_Mutation p.Y379C 0.15 deleterious(0) probably_damaging(0.969) TCGA-R6-A6Y0-01 4 88420738 88420738 C A SPARCL1 Splice_Site 0.17 TCGA-R6-A6Y0-01 5 139193041 139193041 C T PSD2 Silent p.C173C 0.14 TCGA-R6-A6Y0-01 5 146730628 146730628 G C STK32A Missense_Mutation p.G158A 0.10 deleterious(0) probably_damaging(0.923) TCGA-R6-A6Y0-01 5 154255088 154255088 C T CNOT8 3'UTR 0.22 TCGA-R6-A6Y0-01 5 35795828 35795828 T G SPEF2 Missense_Mutation p.D1587E 0.12 tolerated(0.29) probably_damaging(0.991) TCGA-R6-A6Y0-01 5 94994532 94994532 T C SPATA9 Missense_Mutation p.E187G 0.15 tolerated(0.12) benign(0.007) TCGA-R6-A6Y0-01 6 111587146 111587146 C G KIAA1919 Missense_Mutation p.F127L 0.19 deleterious(0) probably_damaging(0.946) TCGA-R6-A6Y0-01 6 138753852 138753852 C T NHSL1 Missense_Mutation p.G548S 0.32 tolerated(0.23) benign(0.041) TCGA-R6-A6Y0-01 6 144780004 144780004 C G UTRN Missense_Mutation p.Q795E 0.13 tolerated(1) benign(0.06) TCGA-R6-A6Y0-01 6 155578453 155578453 G A TIAM2 3'UTR 0.17 TCGA-R6-A6Y0-01 6 163987355 163987355 C T QKI Intron 0.08 TCGA-R6-A6Y0-01 6 18222306 18222306 G A KDM1B 3'UTR 0.36 TCGA-R6-A6Y0-01 6 31931788 31931788 G A SKIV2L Silent p.Q582Q 0.15 TCGA-R6-A6Y0-01 6 32030234 32030234 G C TNXB Missense_Mutation p.P2290A 0.09 benign(0.09) TCGA-R6-A6Y0-01 6 32122851 32122854 GAGA - PPT2 Frame_Shift_Del p.E84Afs*71 0.25 TCGA-R6-A6Y0-01 6 43014654 43014654 G A CUL7 Silent p.R871R 0.08 TCGA-R6-A6Y0-01 6 43470323 43470323 C G TJAP1 Intron 0.17 TCGA-R6-A6Y0-01 6 43582040 43582040 G A POLH Missense_Mutation p.E630K 0.05 deleterious(0.01) probably_damaging(0.971) TCGA-R6-A6Y0-01 6 44329688 44329688 C T SPATS1 Missense_Mutation p.S178L 0.23 deleterious(0.02) benign(0.177) TCGA-R6-A6Y0-01 6 53133745 53133745 T C ELOVL5 3'UTR 0.29 TCGA-R6-A6Y0-01 6 53133756 53133756 A G ELOVL5 3'UTR 0.30 TCGA-R6-A6Y0-01 6 90636428 90636428 T C BACH2 3'UTR 0.13 TCGA-R6-A6Y0-01 7 100174539 100174539 G T LRCH4 Missense_Mutation p.P485H 0.24 tolerated(0.22) possibly_damaging(0.838) TCGA-R6-A6Y0-01 7 103338500 103338500 G T RELN Missense_Mutation p.L315I 0.14 tolerated(0.23) possibly_damaging(0.621) TCGA-R6-A6Y0-01 7 111982780 111982780 T A ZNF277 Missense_Mutation p.L450Q 0.20 deleterious_low_confidence(0) probably_damaging(0.931) TCGA-R6-A6Y0-01 7 123508663 123508663 C G HYAL4 Silent p.L112L 0.16 TCGA-R6-A6Y0-01 7 12370752 12370752 G C VWDE 3'UTR 0.10 TCGA-R6-A6Y0-01 7 2703319 2703319 C T TTYH3 3'UTR 0.09 TCGA-R6-A6Y0-01 7 2704195 2704195 T C TTYH3 3'UTR 0.11 TCGA-R6-A6Y0-01 7 35289630 35289630 C G TBX20 Missense_Mutation p.E105Q 0.17 tolerated(0.49) probably_damaging(0.982) TCGA-R6-A6Y0-01 7 38467636 38467636 T G AMPH Intron 0.15 TCGA-R6-A6Y0-01 7 42001135 42001135 T A GLI3 3'UTR 0.19 TCGA-R6-A6Y0-01 7 56119475 56119475 C T CCT6A 5'UTR 0.25 TCGA-R6-A6Y0-01 7 64439685 64439685 T G ZNF117 Missense_Mutation p.E88D 0.15 deleterious(0) benign(0.129) TCGA-R6-A6Y0-01 7 65217249 65217249 C A SNORA22 5'Flank 0.15 TCGA-R6-A6Y0-01 7 6550294 6550294 G A GRID2IP Silent p.G533G 0.14 TCGA-R6-A6Y0-01 7 90897700 90897700 G C FZD1 3'UTR 0.13 TCGA-R6-A6Y0-01 7 94293534 94293534 G C PEG10 Missense_Mutation p.E222D 0.17 tolerated(0.26) benign(0.124) TCGA-R6-A6Y0-01 8 104427572 104427572 T C DCAF13 Silent p.T118T 0.08 TCGA-R6-A6Y0-01 8 113662437 113662437 A G CSMD3 Missense_Mutation p.L1049P 0.05 tolerated(0.08) probably_damaging(0.968) TCGA-R6-A6Y0-01 8 11407731 11407731 G C BLK Missense_Mutation p.K144N 0.25 tolerated(0.31) possibly_damaging(0.861) TCGA-R6-A6Y0-01 8 116617053 116617053 G C TRPS1 Silent p.S381S 0.09 TCGA-R6-A6Y0-01 8 13162754 13162754 A G DLC1 Intron 0.15 TCGA-R6-A6Y0-01 8 139160865 139160865 A C FAM135B Missense_Mutation p.L1116V 0.14 tolerated(0.53) benign(0.018) TCGA-R6-A6Y0-01 8 143856632 143856632 G C LYNX1 Intron 0.43 TCGA-R6-A6Y0-01 8 143857078 143857078 G A LYNX1 Silent p.N29N 0.10 TCGA-R6-A6Y0-01 8 144790064 144790064 C G CCDC166 Missense_Mutation p.E72D 0.13 deleterious(0.03) probably_damaging(0.997) TCGA-R6-A6Y0-01 8 145154264 145154264 C G SHARPIN Missense_Mutation p.E280Q 0.10 tolerated(0.2) probably_damaging(0.998) TCGA-R6-A6Y0-01 8 21767244 21767244 G C DOK2 Missense_Mutation p.R273G 0.18 tolerated(0.09) possibly_damaging(0.866) TCGA-R6-A6Y0-01 8 26220325 26220325 G A PPP2R2A Missense_Mutation p.D265N 0.17 deleterious(0) probably_damaging(0.988) TCGA-R6-A6Y0-01 8 32607085 32607085 T G NRG1 Missense_Mutation p.L233R 0.28 deleterious(0.04) benign(0.138) TCGA-R6-A6Y0-01 8 35648761 35648761 T C UNC5D 3'Flank 0.18 TCGA-R6-A6Y0-01 8 37914778 37914778 G A EIF4EBP1 Missense_Mutation p.G109S 0.09 tolerated(0.09) benign(0.056) TCGA-R6-A6Y0-01 8 38287203 38287203 A C FGFR1 Missense_Mutation p.S152A 0.12 tolerated(0.33) benign(0.266) TCGA-R6-A6Y0-01 8 48694970 48694970 T C PRKDC Missense_Mutation p.R3788G 0.11 benign(0.444) TCGA-R6-A6Y0-01 8 61654949 61654949 C G CHD7 Missense_Mutation p.Q320E 0.08 benign(0.042) TCGA-R6-A6Y0-01 8 66539513 66539513 G A ARMC1 Silent p.L41L 0.12 TCGA-R6-A6Y0-01 8 71044078 71044078 G A NCOA2 Silent p.V1106V 0.15 TCGA-R6-A6Y0-01 8 71078930 71078930 G A NCOA2 Missense_Mutation p.R201W 0.11 deleterious(0) probably_damaging(1) TCGA-R6-A6Y0-01 8 89051348 89051348 A C MMP16 3'UTR 0.13 TCGA-R6-A6Y0-01 8 91072134 91072134 G C CALB1 3'UTR 0.12 TCGA-R6-A6Y0-01 8 99217371 99217371 G C NIPAL2 Missense_Mutation p.I253M 0.11 deleterious(0) possibly_damaging(0.845) TCGA-R6-A6Y0-01 9 100843474 100843474 G C NANS Intron 0.25 TCGA-R6-A6Y0-01 9 100857153 100857153 C T TRIM14 Silent p.K232K 0.22 TCGA-R6-A6Y0-01 9 129981577 129981577 A G RALGPS1 3'UTR 0.15 TCGA-R6-A6Y0-01 9 132400710 132400710 C A ASB6 Missense_Mutation p.D209Y 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-R6-A6Y0-01 9 137735093 137735093 G T COL5A1 3'UTR 0.30 TCGA-R6-A6Y0-01 9 137801519 137801519 C A FCN1 3'UTR 0.18 TCGA-R6-A6Y0-01 9 35700259 35700259 G A TLN1 Missense_Mutation p.R2197C 0.12 deleterious(0) probably_damaging(0.98) TCGA-R6-A6Y0-01 9 6506918 6506918 G A UHRF2 3'UTR 0.19 TCGA-R6-A6Y0-01 9 72892250 72892250 A G SMC5 Silent p.V135V 0.11 TCGA-R6-A6Y0-01 9 78973464 78973464 G C PCSK5 Missense_Mutation p.A1737P 0.09 tolerated(0.33) benign(0.003) TCGA-R6-A6Y0-01 9 91609655 91609655 T C C9orf47 3'UTR 0.11 TCGA-R6-A6Y0-01 9 96441284 96441284 G C PHF2 3'UTR 0.13 TCGA-R6-A6Y0-01 9 99284790 99284790 G T CDC14B Silent p.L447L 0.18 TCGA-R6-A6Y0-01 X 103349671 103349671 C T SLC25A53 Silent p.L90L 0.23 TCGA-R6-A6Y0-01 X 105153087 105153087 T G NRK Missense_Mutation p.V486G 0.33 tolerated(0.37) benign(0) TCGA-R6-A6Y0-01 X 105449354 105449354 T G MUM1L1 5'UTR 0.29 TCGA-R6-A6Y0-01 X 123838994 123838994 A G TENM1 Missense_Mutation p.L295P 0.19 deleterious_low_confidence(0) probably_damaging(1) TCGA-R6-A6Y0-01 X 13767593 13767593 T G OFD1 Missense_Mutation p.D292E 0.32 tolerated(0.21) probably_damaging(0.999) TCGA-R6-A6Y0-01 X 15287931 15287931 G A ASB9 Silent p.I22I 0.43 TCGA-R6-A6Y0-01 X 50114766 50114766 T - DGKK RNA 0.14 TCGA-R6-A6Y0-01 X 70127650 70127650 C G TEX11 5'UTR 0.33 TCGA-R6-A6Y0-01 X 77359794 77359794 C T PGK1 5'UTR 0.24 TCGA-R6-A6Y0-01 X 78217076 78217076 C T P2RY10 3'UTR 0.26 TCGA-R6-A6Y0-01 Y 4968285 4968285 C A PCDH11Y Missense_Mutation p.P889Q 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-R6-A6Y2-01 10 121336675 121336675 C T TIAL1 Missense_Mutation p.V277M 0.22 tolerated(0.27) benign(0.279) TCGA-R6-A6Y2-01 10 13322988 13322988 G A PHYH Silent p.S317S 0.09 TCGA-R6-A6Y2-01 10 135053543 135053543 C T VENTX Silent p.Y170Y 0.48 TCGA-R6-A6Y2-01 10 28270417 28270417 A C ARMC4 Missense_Mutation p.F305C 0.35 deleterious(0.01) probably_damaging(0.997) TCGA-R6-A6Y2-01 10 61833327 61833327 A G ANK3 Silent p.L2438L 0.33 TCGA-R6-A6Y2-01 10 69970097 69970097 G A MYPN Missense_Mutation p.R1283H 0.43 deleterious(0.03) probably_damaging(0.941) TCGA-R6-A6Y2-01 10 70931415 70931415 C T VPS26A 3'UTR 0.34 TCGA-R6-A6Y2-01 11 132205821 132205821 T C NTM 3'Flank 0.16 TCGA-R6-A6Y2-01 11 55033101 55033101 C A TRIM48 Missense_Mutation p.S162Y 0.34 tolerated(0.06) benign(0.187) TCGA-R6-A6Y2-01 11 57373868 57373868 C G SERPING1 Intron 0.37 TCGA-R6-A6Y2-01 11 57576892 57576892 C T CTNND1 Nonsense_Mutation p.R797* 0.40 TCGA-R6-A6Y2-01 11 61068328 61068328 G A DDB1 Silent p.L1098L 0.16 TCGA-R6-A6Y2-01 11 73625472 73625472 G A PAAF1 Missense_Mutation p.G248R 0.38 deleterious(0) possibly_damaging(0.788) TCGA-R6-A6Y2-01 11 89224418 89224418 G T NOX4 5'UTR 0.21 TCGA-R6-A6Y2-01 12 122990142 122990142 G A RSRC2 Nonsense_Mutation p.Q413* 0.34 TCGA-R6-A6Y2-01 12 39071262 39071262 T C CPNE8 Missense_Mutation p.I456V 0.16 tolerated(0.15) possibly_damaging(0.561) TCGA-R6-A6Y2-01 12 47470241 47470241 G A AMIGO2 3'UTR 0.34 TCGA-R6-A6Y2-01 12 53400186 53400186 C T EIF4B 5'UTR 0.25 TCGA-R6-A6Y2-01 12 72680464 72680464 C T TRHDE Silent p.F261F 0.26 TCGA-R6-A6Y2-01 12 9711038 9711038 C T RP11-726G1.1 RNA 0.06 TCGA-R6-A6Y2-01 13 100153989 100153989 C G TM9SF2 Silent p.P43P 0.15 TCGA-R6-A6Y2-01 13 109318426 109318426 A C MYO16 Missense_Mutation p.K52T 0.14 deleterious(0.02) possibly_damaging(0.701) TCGA-R6-A6Y2-01 13 37679410 37679410 G T CSNK1A1L 5'UTR 0.17 TCGA-R6-A6Y2-01 13 39584326 39584326 A G PROSER1 3'UTR 0.34 TCGA-R6-A6Y2-01 13 52718962 52718962 G A NEK3 Missense_Mutation p.P223L 0.11 deleterious(0) probably_damaging(1) TCGA-R6-A6Y2-01 13 67801630 67801630 G T PCDH9 Missense_Mutation p.Q315K 0.17 tolerated(1) benign(0.021) TCGA-R6-A6Y2-01 13 67802221 67802221 G A PCDH9 Missense_Mutation p.L118F 0.13 tolerated(0.13) probably_damaging(0.991) TCGA-R6-A6Y2-01 13 73320213 73320213 A C BORA Silent p.S290S 0.07 TCGA-R6-A6Y2-01 13 84454169 84454169 C G SLITRK1 Missense_Mutation p.A492P 0.21 tolerated(0.08) possibly_damaging(0.782) TCGA-R6-A6Y2-01 13 84454948 84454948 T C SLITRK1 Missense_Mutation p.K232R 0.27 tolerated(0.45) benign(0.003) TCGA-R6-A6Y2-01 14 24974817 24974817 C T CMA1 Missense_Mutation p.V217I 0.39 deleterious(0.03) possibly_damaging(0.806) TCGA-R6-A6Y2-01 14 67940555 67940555 G A TMEM229B Missense_Mutation p.A29V 0.31 deleterious(0) probably_damaging(0.991) TCGA-R6-A6Y2-01 14 74184239 74184239 C T ELMSAN1 3'UTR 0.57 TCGA-R6-A6Y2-01 14 77917611 77917611 G C VIPAS39 Missense_Mutation p.L88V 0.26 tolerated(0.44) benign(0.079) TCGA-R6-A6Y2-01 14 78325584 78325584 G T ADCK1 Nonsense_Mutation p.E129* 0.54 TCGA-R6-A6Y2-01 15 26792964 26792964 A C GABRB3 Silent p.V466V 0.38 TCGA-R6-A6Y2-01 15 48441450 48441450 G T MYEF2 Silent p.I499I 0.38 TCGA-R6-A6Y2-01 15 70343732 70343732 G A TLE3 Nonsense_Mutation p.Q737* 0.36 TCGA-R6-A6Y2-01 15 83499796 83499796 G A WHAMM Missense_Mutation p.R696Q 0.35 tolerated(0.26) benign(0.174) TCGA-R6-A6Y2-01 15 86118427 86118427 C T AKAP13 Missense_Mutation p.S243F 0.59 deleterious(0.04) benign(0.021) TCGA-R6-A6Y2-01 16 1476241 1476241 G A C16orf91 Missense_Mutation p.P128S 0.49 tolerated_low_confidence(0.06) benign(0) TCGA-R6-A6Y2-01 16 24226796 24226796 T G PRKCB 3'UTR 0.22 TCGA-R6-A6Y2-01 16 24226974 24226974 A C PRKCB 3'UTR 0.51 TCGA-R6-A6Y2-01 16 49672109 49672109 G A ZNF423 Silent p.H318H 0.59 TCGA-R6-A6Y2-01 16 88643781 88643781 G A ZC3H18 Missense_Mutation p.E84K 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-R6-A6Y2-01 17 27281980 27281980 G C SEZ6 3'UTR 0.27 TCGA-R6-A6Y2-01 17 33288425 33288425 C G CCT6B 5'UTR 0.21 TCGA-R6-A6Y2-01 17 7577570 7577570 C A TP53 Missense_Mutation p.M237I 0.62 deleterious(0) probably_damaging(0.997) TCGA-R6-A6Y2-01 18 55153929 55153929 T - ONECUT2 3'UTR 0.27 TCGA-R6-A6Y2-01 19 13085117 13085117 G C DAND5 3'UTR 0.42 TCGA-R6-A6Y2-01 19 16594793 16594793 G A CALR3 Missense_Mutation p.T209M 0.12 deleterious(0.01) benign(0.022) TCGA-R6-A6Y2-01 19 30101445 30101445 C T POP4 Missense_Mutation p.H64Y 0.14 deleterious(0.01) benign(0.003) TCGA-R6-A6Y2-01 19 34685532 34685532 C A LSM14A Missense_Mutation p.P91T 0.23 deleterious(0.02) probably_damaging(0.927) TCGA-R6-A6Y2-01 19 35612193 35612193 C T FXYD3 Intron 0.40 TCGA-R6-A6Y2-01 19 3653570 3653570 C T PIP5K1C Silent p.P213P 0.21 TCGA-R6-A6Y2-01 19 3982032 3982032 G A EEF2 Silent p.N270N 0.38 TCGA-R6-A6Y2-01 19 41404210 41404210 C G CYP2G1P RNA 0.38 TCGA-R6-A6Y2-01 19 51411835 51411835 C T KLK4 Missense_Mutation p.G159S 0.43 tolerated(0.33) probably_damaging(0.999) TCGA-R6-A6Y2-01 19 58361380 58361380 C T ZNF587 5'UTR 0.18 TCGA-R6-A6Y2-01 19 6829897 6829897 G T VAV1 Missense_Mutation p.D456Y 0.19 deleterious(0) probably_damaging(1) TCGA-R6-A6Y2-01 19 6913704 6913704 C A EMR1 Missense_Mutation p.S388Y 0.24 deleterious(0.02) possibly_damaging(0.704) TCGA-R6-A6Y2-01 19 8430944 8430944 G A ANGPTL4 Missense_Mutation p.S142N 0.30 tolerated(0.29) benign(0.026) TCGA-R6-A6Y2-01 19 9406193 9406193 G C ZNF699 Nonsense_Mutation p.Y629* 0.43 TCGA-R6-A6Y2-01 1 1119336 1119336 G A TTLL10 Silent p.K375K 0.33 TCGA-R6-A6Y2-01 1 12887175 12887175 G A PRAMEF11 Missense_Mutation p.R228C 0.30 tolerated(0.08) benign(0) TCGA-R6-A6Y2-01 1 143744220 143744220 A C RP6-206I17.1 RNA 0.02 TCGA-R6-A6Y2-01 1 151261077 151261077 G A ZNF687 Missense_Mutation p.R730Q 0.33 deleterious(0.01) probably_damaging(0.949) TCGA-R6-A6Y2-01 1 152276780 152276780 C T FLG Missense_Mutation p.G3528R 0.15 unknown(0) TCGA-R6-A6Y2-01 1 152883028 152883028 A T IVL Missense_Mutation p.Q252L 0.22 deleterious(0) benign(0.379) TCGA-R6-A6Y2-01 1 155020636 155020636 A T DCST1 Missense_Mutation p.Q620L 0.18 tolerated(0.09) benign(0.131) TCGA-R6-A6Y2-01 1 155220921 155220921 G C FAM189B Missense_Mutation p.S310W 0.43 deleterious(0.02) possibly_damaging(0.642) TCGA-R6-A6Y2-01 1 157504488 157504488 C T FCRL5 Missense_Mutation p.E533K 0.57 tolerated(0.12) benign(0.219) TCGA-R6-A6Y2-01 1 158606544 158606544 A T SPTA1 Missense_Mutation p.L1733M 0.17 deleterious(0.05) probably_damaging(1) TCGA-R6-A6Y2-01 1 164790798 164790798 A G PBX1 Missense_Mutation p.S379G 0.45 tolerated_low_confidence(0.54) benign(0.001) TCGA-R6-A6Y2-01 1 181701652 181701652 C G CACNA1E Silent p.P810P 0.42 TCGA-R6-A6Y2-01 1 197890745 197890745 G A LHX9 Missense_Mutation p.R230Q 0.57 deleterious(0.02) possibly_damaging(0.657) TCGA-R6-A6Y2-01 1 206574987 206574987 C T SRGAP2 Missense_Mutation p.P261S 0.09 tolerated(0.26) benign(0.042) TCGA-R6-A6Y2-01 1 237947346 237947346 G A RYR2 Missense_Mutation p.D4112N 0.23 probably_damaging(1) TCGA-R6-A6Y2-01 1 26366308 26366308 C T SLC30A2 Silent p.L311L 0.22 TCGA-R6-A6Y2-01 1 27686751 27686751 G A MAP3K6 Silent p.F721F 0.43 TCGA-R6-A6Y2-01 1 36937229 36937229 C T CSF3R Missense_Mutation p.D364N 0.34 tolerated(0.5) benign(0.007) TCGA-R6-A6Y2-01 1 44684856 44684856 C T DMAP1 Silent p.R283R 0.32 TCGA-R6-A6Y2-01 1 45809914 45809914 A G TESK2 3'UTR 0.05 TCGA-R6-A6Y2-01 1 47098490 47098490 C T ATPAF1 3'UTR 0.40 TCGA-R6-A6Y2-01 1 64680571 64680571 C T UBE2U Missense_Mutation p.S138F 0.06 tolerated(0.18) possibly_damaging(0.609) TCGA-R6-A6Y2-01 1 75596421 75596421 A G LHX8 Intron 0.34 TCGA-R6-A6Y2-01 1 78395077 78395077 T C NEXN Missense_Mutation p.F314S 0.23 deleterious(0) probably_damaging(0.999) TCGA-R6-A6Y2-01 1 84867689 84867689 G T DNASE2B Missense_Mutation p.E77D 0.19 deleterious(0.03) benign(0.102) TCGA-R6-A6Y2-01 1 98511629 98511629 C T MIR137HG RNA 0.43 TCGA-R6-A6Y2-01 20 1424391 1424391 C T NSFL1C 3'UTR 0.38 TCGA-R6-A6Y2-01 20 1514941 1514941 C T SIRPD 3'UTR 0.59 TCGA-R6-A6Y2-01 20 18794461 18794461 T C SCP2D1 Translation_Start_Site p.M1? 0.26 deleterious(0) probably_damaging(0.994) TCGA-R6-A6Y2-01 20 21494456 21494458 ATT - NKX2-2 5'UTR 0.25 TCGA-R6-A6Y2-01 20 29632651 29632651 A C FRG1B Missense_Mutation p.S156R 0.03 deleterious(0.01) possibly_damaging(0.826) TCGA-R6-A6Y2-01 20 3321479 3321479 G A C20orf194 Intron 0.53 TCGA-R6-A6Y2-01 20 47251238 47251238 G A PREX1 Nonsense_Mutation p.Q1415* 0.26 TCGA-R6-A6Y2-01 20 47730417 47730417 C G STAU1 3'UTR 0.31 TCGA-R6-A6Y2-01 20 55984020 55984020 C A RBM38 3'UTR 0.24 TCGA-R6-A6Y2-01 20 57896131 57896131 C T EDN3 Missense_Mutation p.A142V 0.59 tolerated(0.8) benign(0.024) TCGA-R6-A6Y2-01 20 58422217 58422217 T G PHACTR3 3'UTR 0.52 TCGA-R6-A6Y2-01 20 60318683 60318683 A C CDH4 Missense_Mutation p.K78N 0.28 deleterious(0.04) possibly_damaging(0.561) TCGA-R6-A6Y2-01 20 62070961 62070961 G A KCNQ2 Missense_Mutation p.A306V 0.49 deleterious(0.02) probably_damaging(0.974) TCGA-R6-A6Y2-01 21 45878646 45878646 G T LRRC3 3'UTR 0.64 TCGA-R6-A6Y2-01 22 17450854 17450854 C T GAB4 Missense_Mutation p.G306S 0.08 tolerated(0.21) benign(0.143) TCGA-R6-A6Y2-01 22 23223516 23223516 A C IGLV3-1 Missense_Mutation p.T96P 0.23 deleterious(0.01) benign(0.013) TCGA-R6-A6Y2-01 22 30819305 30819306 - CAGTCTG SEC14L2 3'UTR 0.17 TCGA-R6-A6Y2-01 22 37322157 37322157 A G CSF2RB Missense_Mutation p.Y110C 0.20 deleterious(0.02) possibly_damaging(0.792) TCGA-R6-A6Y2-01 2 108488029 108488029 A C RGPD4 Missense_Mutation p.K1190T 0.23 tolerated(0.08) possibly_damaging(0.771) TCGA-R6-A6Y2-01 2 113539200 113539200 G A IL1A Silent p.I100I 0.30 TCGA-R6-A6Y2-01 2 168102391 168102391 C T XIRP2 Nonsense_Mutation p.R1497* 0.22 TCGA-R6-A6Y2-01 2 183387169 183387169 C A PDE1A 5'UTR 0.12 TCGA-R6-A6Y2-01 2 228552908 228552908 C A SLC19A3 Missense_Mutation p.G430W 0.20 deleterious(0) probably_damaging(1) TCGA-R6-A6Y2-01 2 233322334 233322334 C T ALPI Silent p.Y236Y 0.36 TCGA-R6-A6Y2-01 2 23916217 23916217 T A KLHL29 Missense_Mutation p.M454K 0.27 tolerated(1) benign(0.041) TCGA-R6-A6Y2-01 2 26152860 26152860 C A KIF3C Silent p.R693R 0.26 TCGA-R6-A6Y2-01 2 60687083 60687083 C T BCL11A 3'UTR 0.10 TCGA-R6-A6Y2-01 2 71838712 71838712 C T DYSF Missense_Mutation p.R1393W 0.31 deleterious(0) possibly_damaging(0.655) TCGA-R6-A6Y2-01 2 72742249 72742249 G A EXOC6B Missense_Mutation p.R308W 0.32 deleterious(0) possibly_damaging(0.781) TCGA-R6-A6Y2-01 2 8890423 8890423 G A KIDINS220 Missense_Mutation p.A1078V 0.33 tolerated(0.3) benign(0.047) TCGA-R6-A6Y2-01 2 95719156 95719156 G A MAL Missense_Mutation p.V140M 0.15 tolerated(0.22) benign(0.269) TCGA-R6-A6Y2-01 3 113677442 113677442 C T ZDHHC23 Intron 0.75 TCGA-R6-A6Y2-01 3 118649028 118649028 G A IGSF11 Silent p.S49S 0.16 TCGA-R6-A6Y2-01 3 129037060 129037060 G A H1FX 5'Flank 0.39 TCGA-R6-A6Y2-01 3 132211314 132211324 AGAGTAACACA - DNAJC13 Frame_Shift_Del p.N1229Tfs*18 0.17 TCGA-R6-A6Y2-01 3 179592121 179592121 C T PEX5L Silent p.P240P 0.49 TCGA-R6-A6Y2-01 3 52476595 52476595 G A SEMA3G Nonsense_Mutation p.R107* 0.12 TCGA-R6-A6Y2-01 3 86115970 86115970 G T CADM2 3'Flank 0.24 TCGA-R6-A6Y2-01 4 15070604 15070604 T C CPEB2 3'UTR 0.45 TCGA-R6-A6Y2-01 4 39310386 39310386 G A RFC1 Silent p.L585L 0.67 TCGA-R6-A6Y2-01 4 55605736 55605736 T C KIT 3'UTR 0.29 TCGA-R6-A6Y2-01 4 65274862 65274862 T A TECRL Missense_Mutation p.R70W 0.13 deleterious(0) possibly_damaging(0.471) TCGA-R6-A6Y2-01 4 68374696 68374696 C G CENPC Missense_Mutation p.R580S 0.05 deleterious(0.01) benign(0.109) TCGA-R6-A6Y2-01 5 112170742 112170742 T - APC Frame_Shift_Del p.A614Hfs*16 0.33 TCGA-R6-A6Y2-01 5 121188036 121188036 G A FTMT Silent p.A126A 0.37 TCGA-R6-A6Y2-01 5 131545994 131545994 C T P4HA2 Missense_Mutation p.R231H 0.10 tolerated(0.14) probably_damaging(0.97) TCGA-R6-A6Y2-01 5 140187432 140187432 C T PCDHA4 Silent p.P220P 0.36 TCGA-R6-A6Y2-01 5 177547253 177547253 G A N4BP3 Silent p.A135A 0.24 TCGA-R6-A6Y2-01 5 32074051 32074051 G A PDZD2 Missense_Mutation p.G947R 0.56 deleterious(0) probably_damaging(1) TCGA-R6-A6Y2-01 6 118880983 118880983 G T PLN 3'UTR 0.62 TCGA-R6-A6Y2-01 6 26104455 26104455 C G HIST1H4C Missense_Mutation p.Q94E 0.14 deleterious(0.02) possibly_damaging(0.614) TCGA-R6-A6Y2-01 6 43269984 43269984 G A SLC22A7 Missense_Mutation p.G370R 0.29 deleterious(0.03) benign(0.247) TCGA-R6-A6Y2-01 6 56989538 56989538 A G ZNF451 Missense_Mutation p.I65V 0.05 tolerated(1) benign(0) TCGA-R6-A6Y2-01 6 71377799 71377799 C T SMAP1 Silent p.L25L 0.34 TCGA-R6-A6Y2-01 6 73787086 73787086 A G KCNQ5 Missense_Mutation p.K220E 0.26 deleterious(0) possibly_damaging(0.545) TCGA-R6-A6Y2-01 7 106299840 106299840 G T CCDC71L 3'UTR 0.28 TCGA-R6-A6Y2-01 7 1273298 1273298 G A UNCX Silent p.A139A 0.56 TCGA-R6-A6Y2-01 7 138554434 138554434 C T KIAA1549 Missense_Mutation p.R1542H 0.32 deleterious(0) probably_damaging(1) TCGA-R6-A6Y2-01 7 142997515 142997515 C T CASP2 Intron 0.14 TCGA-R6-A6Y2-01 7 154564561 154564561 A G DPP6 Missense_Mutation p.S349G 0.30 tolerated(0.19) benign(0.001) TCGA-R6-A6Y2-01 7 18788726 18788726 C T HDAC9 Nonsense_Mutation p.R670* 0.33 TCGA-R6-A6Y2-01 7 36934485 36934485 C T ELMO1 Silent p.Q525Q 0.25 TCGA-R6-A6Y2-01 7 41729607 41729607 G A INHBA Missense_Mutation p.R308C 0.30 deleterious(0) probably_damaging(0.953) TCGA-R6-A6Y2-01 7 42958813 42958813 T G PSMA2 Intron 0.23 TCGA-R6-A6Y2-01 7 88847482 88847482 A C ZNF804B Missense_Mutation p.K41T 0.33 deleterious(0) probably_damaging(0.997) TCGA-R6-A6Y2-01 7 92761642 92761642 G T SAMD9L Missense_Mutation p.P1215T 0.25 deleterious(0) probably_damaging(0.958) TCGA-R6-A6Y2-01 7 99581017 99581017 C T AZGP1P1 RNA 0.29 TCGA-R6-A6Y2-01 8 144662314 144662314 C T EEF1D Silent p.G591G 0.34 TCGA-R6-A6Y2-01 8 17132397 17132397 C G VPS37A Missense_Mutation p.P191R 0.74 deleterious(0) possibly_damaging(0.581) TCGA-R6-A6Y2-01 8 28827691 28827691 G A HMBOX1 Missense_Mutation p.R52H 0.18 tolerated(0.21) benign(0.016) TCGA-R6-A6Y2-01 8 36692334 36692334 G C KCNU1 Missense_Mutation p.A415P 0.22 deleterious(0) probably_damaging(0.998) TCGA-R6-A6Y2-01 8 74236437 74236437 G A RDH10 3'UTR 0.65 TCGA-R6-A6Y2-01 9 104188851 104188851 A G ALDOB Missense_Mutation p.Y204H 0.27 tolerated(0.48) benign(0.018) TCGA-R6-A6Y2-01 9 119858399 119858399 C T ASTN2 Silent p.T349T 0.32 TCGA-R6-A6Y2-01 9 124521267 124521267 C T DAB2IP Missense_Mutation p.P175S 0.25 deleterious(0) probably_damaging(0.995) TCGA-R6-A6Y2-01 9 125289383 125289383 G A OR1N1 Silent p.L64L 0.42 TCGA-R6-A6Y2-01 9 125827718 125827718 A T RABGAP1 Missense_Mutation p.D629V 0.29 deleterious(0) probably_damaging(0.998) TCGA-R6-A6Y2-01 9 128728190 128728190 T A PBX3 Missense_Mutation p.D431E 0.34 deleterious(0.05) possibly_damaging(0.763) TCGA-R6-A6Y2-01 9 13133903 13133903 T C MPDZ Missense_Mutation p.T1462A 0.16 tolerated(0.98) benign(0.001) TCGA-R6-A6Y2-01 9 36085367 36085367 G C RECK Intron 0.30 TCGA-R6-A6Y2-01 9 95043051 95043051 T A IARS Missense_Mutation p.E241V 0.15 deleterious(0.02) benign(0.13) TCGA-R6-A6Y2-01 X 152612275 152612275 A C ZNF275 Splice_Site p.X45_splice 0.12 TCGA-R6-A6Y2-01 X 32509576 32509576 C A DMD Nonsense_Mutation p.E814* 0.28 TCGA-R6-A6Y2-01 X 44920585 44920585 G A KDM6A Nonsense_Mutation p.W449* 0.57 TCGA-R6-A8W5-01 10 103919295 103919295 G T NOLC1 Nonsense_Mutation p.E277* 0.32 TCGA-R6-A8W5-01 10 120085671 120085671 G A FAM204A Nonsense_Mutation p.R180* 0.21 TCGA-R6-A8W5-01 10 21807411 21807411 C T SKIDA1 5'UTR 0.24 TCGA-R6-A8W5-01 10 44871398 44871398 T C CXCL12 3'Flank 0.24 TCGA-R6-A8W5-01 10 5499157 5499157 A T NET1 3'UTR 0.07 TCGA-R6-A8W5-01 10 68687289 68687289 C T LRRTM3 Silent p.I205I 0.26 TCGA-R6-A8W5-01 10 99619286 99619286 C T GOLGA7B Silent p.S28S 0.30 TCGA-R6-A8W5-01 11 105850808 105850808 A T GRIA4 3'UTR 0.41 TCGA-R6-A8W5-01 11 109294749 109294749 G T C11orf87 Silent p.R130R 0.21 TCGA-R6-A8W5-01 11 124135398 124135398 A G OR8G5 Missense_Mutation p.S226G 0.06 deleterious(0.01) possibly_damaging(0.809) TCGA-R6-A8W5-01 11 130263672 130263672 C T RP11-121M22.1 RNA 0.44 TCGA-R6-A8W5-01 11 132290100 132290100 A G OPCML Missense_Mutation p.F342S 0.26 tolerated(0.08) benign(0.238) TCGA-R6-A8W5-01 11 2950495 2950495 C A PHLDA2 Missense_Mutation p.D34Y 0.42 deleterious(0) probably_damaging(0.988) TCGA-R6-A8W5-01 11 47460234 47460234 C T RAPSN Intron 0.13 TCGA-R6-A8W5-01 11 48266938 48266938 T G OR4X2 Missense_Mutation p.F95V 0.21 tolerated(0.4) possibly_damaging(0.698) TCGA-R6-A8W5-01 11 55038035 55038035 T G TRIM48 3'UTR 0.06 TCGA-R6-A8W5-01 11 58602155 58602155 A C GLYATL2 Missense_Mutation p.L211R 0.24 deleterious(0.01) benign(0.304) TCGA-R6-A8W5-01 11 64032910 64032910 C T PLCB3 Missense_Mutation p.R991C 0.14 deleterious(0.01) possibly_damaging(0.676) TCGA-R6-A8W5-01 11 64329843 64329843 C T SLC22A11 Missense_Mutation p.R253W 0.15 tolerated(0.07) possibly_damaging(0.466) TCGA-R6-A8W5-01 11 71948464 71948464 C T INPPL1 Missense_Mutation p.P1059L 0.05 tolerated(0.2) possibly_damaging(0.726) TCGA-R6-A8W5-01 11 89935104 89935104 A G CHORDC1 3'UTR 0.53 TCGA-R6-A8W5-01 12 105519872 105519872 C T KIAA1033 Missense_Mutation p.R293W 0.09 deleterious(0) probably_damaging(0.993) TCGA-R6-A8W5-01 12 123470823 123470823 C T PITPNM2 Silent p.T1267T 0.40 TCGA-R6-A8W5-01 12 124817728 124817728 G C NCOR2 Missense_Mutation p.R2235G 0.15 probably_damaging(0.993) TCGA-R6-A8W5-01 12 31944230 31944230 A T H3F3C 3'UTR 0.11 TCGA-R6-A8W5-01 12 39047710 39047710 T G CPNE8 Missense_Mutation p.T557P 0.17 tolerated(0.18) benign(0.016) TCGA-R6-A8W5-01 12 52841347 52841347 C T KRT6B Missense_Mutation p.E479K 0.08 deleterious(0) probably_damaging(0.98) TCGA-R6-A8W5-01 12 56364968 56364968 G A CDK2 Nonsense_Mutation p.W243* 0.15 TCGA-R6-A8W5-01 12 57127970 57127970 G A PRIM1 Silent p.L402L 0.17 TCGA-R6-A8W5-01 12 8926468 8926468 A G RIMKLB 3'UTR 0.47 TCGA-R6-A8W5-01 12 96412682 96412682 C T LTA4H Splice_Site p.X238_splice 0.13 TCGA-R6-A8W5-01 13 101833397 101833397 G A NALCN Intron 0.24 TCGA-R6-A8W5-01 13 110436619 110436619 C A IRS2 Silent p.S594S 0.18 TCGA-R6-A8W5-01 13 110802286 110802286 T G COL4A1 3'UTR 0.21 TCGA-R6-A8W5-01 13 58300795 58300795 A C PCDH17 3'UTR 0.32 TCGA-R6-A8W5-01 14 51448791 51448791 G A TRIM9 Missense_Mutation p.A545V 0.17 deleterious(0.04) possibly_damaging(0.705) TCGA-R6-A8W5-01 14 57670727 57670727 G A EXOC5 3'UTR 0.13 TCGA-R6-A8W5-01 14 71205012 71205012 C T MAP3K9 Silent p.T598T 0.15 TCGA-R6-A8W5-01 15 25925092 25925092 A C ATP10A Missense_Mutation p.V1299G 0.08 deleterious(0) benign(0.189) TCGA-R6-A8W5-01 15 40568559 40568559 C T PAK6 3'UTR 0.27 TCGA-R6-A8W5-01 15 63961885 63961885 A G HERC1 Silent p.S2686S 0.38 TCGA-R6-A8W5-01 15 71329592 71329592 G A LRRC49 Missense_Mutation p.S598N 0.31 tolerated(1) benign(0.002) TCGA-R6-A8W5-01 15 75692464 75692464 A C SIN3A Missense_Mutation p.W591G 0.06 deleterious(0) probably_damaging(0.999) TCGA-R6-A8W5-01 15 82335815 82335815 C A MEX3B Nonsense_Mutation p.G466* 0.12 TCGA-R6-A8W5-01 16 49430393 49430393 C T C16orf78 Nonsense_Mutation p.R152* 0.21 TCGA-R6-A8W5-01 16 57507547 57507547 G A DOK4 Silent p.I280I 0.10 TCGA-R6-A8W5-01 16 75146326 75146326 G A LDHD Silent p.G484G 0.12 TCGA-R6-A8W5-01 17 35518897 35518897 A G ACACA Missense_Mutation p.V1716A 0.32 deleterious(0.04) probably_damaging(0.999) TCGA-R6-A8W5-01 17 73887368 73887369 - GGC TRIM65 In_Frame_Ins p.R348dup 0.14 TCGA-R6-A8W5-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.36 tolerated(0.11) benign(0.308) TCGA-R6-A8W5-01 17 76120749 76120749 G T TMC6 Missense_Mutation p.F249L 0.41 deleterious(0.02) possibly_damaging(0.905) TCGA-R6-A8W5-01 17 8064090 8064090 T A VAMP2 3'UTR 0.20 TCGA-R6-A8W5-01 17 8076806 8076806 G C TMEM107 3'Flank 0.35 TCGA-R6-A8W5-01 17 9490147 9490147 G A WDR16 Missense_Mutation p.G135R 0.10 deleterious(0) probably_damaging(0.933) TCGA-R6-A8W5-01 18 3845292 3845292 C T DLGAP1 Intron 0.12 TCGA-R6-A8W5-01 18 61585277 61585277 G A SERPINB10 Missense_Mutation p.D105N 0.12 tolerated(0.72) benign(0.005) TCGA-R6-A8W5-01 18 70204945 70204945 A T CBLN2 3'UTR 0.18 TCGA-R6-A8W5-01 19 39443324 39443324 C T FBXO17 Intron 0.11 TCGA-R6-A8W5-01 19 42794952 42794952 C - CIC Frame_Shift_Del p.P678Lfs*50 0.34 TCGA-R6-A8W5-01 19 50046369 50046369 C T RCN3 Missense_Mutation p.R296W 0.30 deleterious(0) probably_damaging(0.976) TCGA-R6-A8W5-01 19 58301711 58301711 C T ZNF586 Nonsense_Mutation p.Q36* 0.32 TCGA-R6-A8W5-01 19 58772267 58772267 G C ZNF544 Missense_Mutation p.A99P 0.19 tolerated(0.34) possibly_damaging(0.796) TCGA-R6-A8W5-01 19 9056542 9056542 C A MUC16 Missense_Mutation p.G10302C 0.08 benign(0.039) TCGA-R6-A8W5-01 1 115260271 115260271 T G CSDE1 3'UTR 0.09 TCGA-R6-A8W5-01 1 151131355 151131355 A T TNFAIP8L2 Missense_Mutation p.K61M 0.43 deleterious(0) probably_damaging(0.99) TCGA-R6-A8W5-01 1 152282919 152282919 T C FLG Silent p.A1481A 0.18 TCGA-R6-A8W5-01 1 152283739 152283739 T C FLG Missense_Mutation p.H1208R 0.24 benign(0.227) TCGA-R6-A8W5-01 1 152283911 152283911 C T FLG Missense_Mutation p.D1151N 0.23 possibly_damaging(0.539) TCGA-R6-A8W5-01 1 152287144 152287145 - CAGTG FLG Frame_Shift_Ins p.E73Afs*6 0.17 TCGA-R6-A8W5-01 1 154144685 154144685 T A TPM3 Intron 0.17 TCGA-R6-A8W5-01 1 156542318 156542318 C T IQGAP3 Missense_Mutation p.E2K 0.15 deleterious_low_confidence(0.04) benign(0.057) TCGA-R6-A8W5-01 1 17023042 17023042 C T ESPNP RNA 0.07 TCGA-R6-A8W5-01 1 183184717 183184717 G A LAMC2 Missense_Mutation p.R133K 0.30 tolerated(0.48) benign(0.001) TCGA-R6-A8W5-01 1 214171008 214171008 G A PROX1 Missense_Mutation p.R377H 0.15 tolerated(0.15) possibly_damaging(0.703) TCGA-R6-A8W5-01 1 237801690 237801690 A C RYR2 Missense_Mutation p.S2276R 0.23 probably_damaging(0.985) TCGA-R6-A8W5-01 1 247151543 247151543 G A ZNF695 Missense_Mutation p.L92F 0.07 tolerated(1) benign(0.001) TCGA-R6-A8W5-01 1 248201860 248201860 G A OR2L2 Silent p.G97G 0.23 TCGA-R6-A8W5-01 1 49511431 49511431 G A AGBL4 Missense_Mutation p.P140L 0.26 deleterious(0.05) probably_damaging(1) TCGA-R6-A8W5-01 1 76190343 76190343 G A ACADM 5'Flank 0.33 TCGA-R6-A8W5-01 1 76365303 76365303 G A MSH4 Missense_Mutation p.G844E 0.09 deleterious(0) probably_damaging(1) TCGA-R6-A8W5-01 1 87101384 87101384 A G RP4-651E10.4 Intron 0.06 TCGA-R6-A8W5-01 20 50049181 50049181 G A NFATC2 Silent p.A715A 0.06 TCGA-R6-A8W5-01 21 31654926 31654926 T G KRTAP24-1 Missense_Mutation p.T109P 0.30 tolerated(0.1) probably_damaging(0.961) TCGA-R6-A8W5-01 21 31812831 31812831 G A KRTAP15-1 Silent p.Q62Q 0.05 TCGA-R6-A8W5-01 21 33372275 33372275 T C HUNK 3'UTR 0.45 TCGA-R6-A8W5-01 21 46895449 46895449 G A COL18A1 Silent p.T446T 0.39 TCGA-R6-A8W5-01 22 18072879 18072879 G A SLC25A18 Silent p.E275E 0.25 TCGA-R6-A8W5-01 22 23742518 23742518 G A ZDHHC8P1 RNA 0.48 TCGA-R6-A8W5-01 22 39069249 39069249 A G CBY1 3'UTR 0.45 TCGA-R6-A8W5-01 22 41697642 41697642 C T ZC3H7B 5'UTR 0.45 TCGA-R6-A8W5-01 22 41794897 41794897 C T TEF 3'UTR 0.17 TCGA-R6-A8W5-01 22 42540569 42540573 CCCTT - RP4-669P10.16 5'Flank 0.27 TCGA-R6-A8W5-01 2 108872060 108872060 C G SULT1C3 Missense_Mutation p.C144W 0.24 deleterious(0) probably_damaging(0.975) TCGA-R6-A8W5-01 2 113127753 113127754 - CTCAT RGPD8 3'UTR 0.14 TCGA-R6-A8W5-01 2 138434490 138434490 T G THSD7B 3'UTR 0.33 TCGA-R6-A8W5-01 2 149880710 149880710 A C KIF5C 3'UTR 0.09 TCGA-R6-A8W5-01 2 166019203 166019203 C A SCN3A Missense_Mutation p.C277F 0.29 deleterious(0) benign(0.124) TCGA-R6-A8W5-01 2 179197705 179197705 A G OSBPL6 Missense_Mutation p.I198M 0.20 tolerated(0.24) benign(0.025) TCGA-R6-A8W5-01 2 203831815 203831815 C T CARF Missense_Mutation p.P316L 0.15 deleterious(0) probably_damaging(0.916) TCGA-R6-A8W5-01 2 206659485 206659485 C T NRP2 Silent p.Y833Y 0.20 TCGA-R6-A8W5-01 2 220173953 220173953 G A PTPRN Silent p.A34A 0.24 TCGA-R6-A8W5-01 2 228858303 228858303 G A SPHKAP Silent p.G1556G 0.11 TCGA-R6-A8W5-01 2 88482532 88482532 C T THNSL2 Silent p.A339A 0.14 TCGA-R6-A8W5-01 3 133547331 133547332 - A RAB6B 3'UTR 0.14 TCGA-R6-A8W5-01 3 170136748 170136748 C T CLDN11 5'UTR 0.13 TCGA-R6-A8W5-01 3 183967586 183967586 A C ECE2 Missense_Mutation p.D35A 0.39 deleterious_low_confidence(0) possibly_damaging(0.907) TCGA-R6-A8W5-01 3 186917640 186917640 G A RTP1 Missense_Mutation p.E192K 0.27 deleterious(0.01) probably_damaging(0.997) TCGA-R6-A8W5-01 3 194080003 194080003 C T LRRC15 3'UTR 0.21 TCGA-R6-A8W5-01 3 41795927 41795927 T C ULK4 Silent p.R749R 0.24 TCGA-R6-A8W5-01 3 52977502 52977502 C T SFMBT1 Silent p.E77E 0.20 TCGA-R6-A8W5-01 3 78676529 78676529 G A ROBO1 Missense_Mutation p.P1273S 0.12 tolerated(0.11) probably_damaging(0.986) TCGA-R6-A8W5-01 4 114179302 114179302 G A ANK2 Missense_Mutation p.E429K 0.15 benign(0.106) TCGA-R6-A8W5-01 4 115997561 115997561 T A NDST4 Missense_Mutation p.E211V 0.39 tolerated(0.53) possibly_damaging(0.567) TCGA-R6-A8W5-01 4 153249360 153249361 - T FBXW7 Frame_Shift_Ins p.R473Kfs*4 0.18 TCGA-R6-A8W5-01 4 153332471 153332487 TAGAATGGGGAGGAGAG - FBXW7 Frame_Shift_Del p.L157Yfs*15 0.18 TCGA-R6-A8W5-01 4 46099235 46099235 A C GABRG1 Missense_Mutation p.L79R 0.10 deleterious(0) probably_damaging(0.999) TCGA-R6-A8W5-01 4 65175643 65175643 A C TECRL Silent p.A186A 0.29 TCGA-R6-A8W5-01 4 71255445 71255445 T G SMR3B Silent p.P40P 0.42 TCGA-R6-A8W5-01 4 87968484 87968484 C T AFF1 Missense_Mutation p.P266L 0.25 tolerated(0.28) benign(0.442) TCGA-R6-A8W5-01 4 88312183 88312183 G C HSD17B11 Missense_Mutation p.L14V 0.30 tolerated(1) probably_damaging(0.952) TCGA-R6-A8W5-01 4 98480188 98480188 A G STPG2 3'UTR 0.06 TCGA-R6-A8W5-01 5 10260964 10260964 C A CCT5 Missense_Mutation p.H312N 0.14 deleterious(0) probably_damaging(0.981) TCGA-R6-A8W5-01 5 13871844 13871844 G A DNAH5 Missense_Mutation p.R1143C 0.13 benign(0) TCGA-R6-A8W5-01 5 140242566 140242566 G A AC005609.1 Missense_Mutation p.S137L 0.10 deleterious_low_confidence(0) possibly_damaging(0.519) TCGA-R6-A8W5-01 5 140431920 140431920 C T PCDHB1 Missense_Mutation p.L289F 0.16 tolerated(0.62) possibly_damaging(0.61) TCGA-R6-A8W5-01 5 141244537 141244537 C A PCDH1 Missense_Mutation p.K453N 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-R6-A8W5-01 5 160025796 160025796 T A ATP10B Missense_Mutation p.K1182M 0.08 tolerated(0.19) probably_damaging(0.954) TCGA-R6-A8W5-01 5 19503156 19503156 G A CDH18 Silent p.F525F 0.08 TCGA-R6-A8W5-01 5 45645495 45645495 T G HCN1 Missense_Mutation p.K214T 0.06 deleterious(0) probably_damaging(0.998) TCGA-R6-A8W5-01 5 54529367 54529367 C T CCNO 5'UTR 0.29 TCGA-R6-A8W5-01 5 94230447 94230447 G T MCTP1 Silent p.V582V 0.19 TCGA-R6-A8W5-01 6 158505053 158505053 G T SYNJ2 Nonsense_Mutation p.E1019* 0.27 TCGA-R6-A8W5-01 6 161771153 161771153 C T PARK2 Missense_Mutation p.G459E 0.24 deleterious(0) probably_damaging(1) TCGA-R6-A8W5-01 6 20493894 20493894 T A E2F3 3'UTR 0.12 TCGA-R6-A8W5-01 6 28542713 28542713 T G SCAND3 Missense_Mutation p.E590A 0.30 tolerated_low_confidence(0.25) benign(0) TCGA-R6-A8W5-01 6 41029176 41029176 G A APOBEC2 Missense_Mutation p.G81S 0.30 tolerated(0.4) benign(0.087) TCGA-R6-A8W5-01 6 43214429 43214429 G A TTBK1 Missense_Mutation p.E11K 0.20 possibly_damaging(0.736) TCGA-R6-A8W5-01 6 88853068 88853068 A C CNR1 3'UTR 0.26 TCGA-R6-A8W5-01 7 143793132 143793132 G A OR2A12 Silent p.%3D 0.24 TCGA-R6-A8W5-01 7 154760285 154760285 C G PAXIP1 Missense_Mutation p.Q542H 0.07 tolerated(0.13) unknown(0) TCGA-R6-A8W5-01 8 100865817 100865817 G A VPS13B Silent p.P3425P 0.24 TCGA-R6-A8W5-01 8 139164797 139164797 A T FAM135B Missense_Mutation p.C641S 0.15 tolerated(0.18) benign(0.004) TCGA-R6-A8W5-01 8 143602279 143602279 G A BAI1 Missense_Mutation p.R1006H 0.29 tolerated(0.26) benign(0) TCGA-R6-A8W5-01 8 145759580 145759580 G A ARHGAP39 Missense_Mutation p.A874V 0.09 deleterious(0) possibly_damaging(0.684) TCGA-R6-A8W5-01 8 65528530 65528530 C G CYP7B1 Missense_Mutation p.E190Q 0.13 deleterious(0.03) probably_damaging(0.926) TCGA-R6-A8W5-01 8 87424100 87424100 C G WWP1 Nonsense_Mutation p.S353* 0.17 TCGA-R6-A8W5-01 8 8750480 8750480 C T MFHAS1 Missense_Mutation p.R30H 0.12 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-R6-A8W5-01 9 126133391 126133391 C T CRB2 Missense_Mutation p.S657F 0.27 tolerated(0.73) possibly_damaging(0.485) TCGA-R6-A8W5-01 9 8486299 8486299 G C PTPRD Missense_Mutation p.L840V 0.10 tolerated(0.21) probably_damaging(0.987) TCGA-R6-A8W5-01 X 103499076 103499076 G A ESX1 Missense_Mutation p.P89S 0.12 tolerated(0.64) possibly_damaging(0.857) TCGA-R6-A8W5-01 X 105450129 105450129 A C MUM1L1 Missense_Mutation p.K235T 0.52 tolerated(0.22) benign(0.22) TCGA-R6-A8W5-01 X 142605243 142605243 C T SPANXN3 5'UTR 0.09 TCGA-R6-A8W5-01 X 142716871 142716871 G T SLITRK4 Missense_Mutation p.A685D 0.31 tolerated(0.54) benign(0.051) TCGA-R6-A8W5-01 X 44383100 44383100 T G FUNDC1 3'UTR 0.37 TCGA-R6-A8W5-01 X 89177239 89177239 A C TGIF2LX Missense_Mutation p.K52T 0.63 tolerated(0.07) probably_damaging(0.981) TCGA-R6-A8W8-01 10 126301884 126301884 C T LHPP Silent p.N256N 0.21 TCGA-R6-A8W8-01 10 12867592 12867592 C T CAMK1D Silent p.A314A 0.18 TCGA-R6-A8W8-01 10 134974017 134974017 G A KNDC1 Missense_Mutation p.G16S 0.44 tolerated(0.19) benign(0.034) TCGA-R6-A8W8-01 10 135020624 135020624 G A KNDC1 Intron 0.62 TCGA-R6-A8W8-01 10 135125492 135125492 G A ZNF511 Intron 0.19 TCGA-R6-A8W8-01 10 15688907 15688907 G A ITGA8 Missense_Mutation p.T382M 0.20 tolerated(0.09) benign(0.25) TCGA-R6-A8W8-01 10 33545244 33545244 C G NRP1 Missense_Mutation p.D272H 0.40 deleterious(0.01) possibly_damaging(0.77) TCGA-R6-A8W8-01 11 114118002 114118002 G A ZBTB16 Silent p.T569T 0.21 TCGA-R6-A8W8-01 11 114118040 114118040 A C ZBTB16 Missense_Mutation p.K582T 0.36 tolerated(0.24) possibly_damaging(0.833) TCGA-R6-A8W8-01 11 76980100 76980100 C T GDPD4 Missense_Mutation p.V165I 0.21 tolerated(1) benign(0.013) TCGA-R6-A8W8-01 12 100551427 100551427 G T AC010203.1 5'Flank 0.27 TCGA-R6-A8W8-01 12 119594488 119594488 G T SRRM4 Missense_Mutation p.S574I 0.29 deleterious_low_confidence(0) unknown(0) TCGA-R6-A8W8-01 12 124827641 124827641 G A NCOR2 Missense_Mutation p.R1616W 0.33 probably_damaging(1) TCGA-R6-A8W8-01 12 124832396 124832396 G T NCOR2 Missense_Mutation p.H1349Q 0.33 probably_damaging(0.935) TCGA-R6-A8W8-01 12 13769494 13769494 A G GRIN2B Missense_Mutation p.I408T 0.44 deleterious(0) probably_damaging(0.996) TCGA-R6-A8W8-01 12 33560014 33560014 A G SYT10 Missense_Mutation p.F263L 0.26 tolerated(0.25) possibly_damaging(0.676) TCGA-R6-A8W8-01 12 40926018 40926018 T G MUC19 Intron 0.42 TCGA-R6-A8W8-01 12 40928540 40928540 A G MUC19 Intron 0.29 TCGA-R6-A8W8-01 12 40939164 40939164 T C MUC19 3'UTR 0.24 TCGA-R6-A8W8-01 12 42853858 42853858 C T PRICKLE1 Missense_Mutation p.R750Q 0.44 tolerated(0.24) benign(0.002) TCGA-R6-A8W8-01 12 49956845 49956845 C T MCRS1 Silent p.A261A 0.23 TCGA-R6-A8W8-01 12 53295762 53295762 A G KRT8 Missense_Mutation p.F168S 0.11 deleterious(0.03) benign(0.087) TCGA-R6-A8W8-01 12 64678469 64678469 G A C12orf56 Missense_Mutation p.R269C 0.21 deleterious(0) benign(0.077) TCGA-R6-A8W8-01 12 77449703 77449703 G A E2F7 Missense_Mutation p.R101W 0.34 deleterious(0.03) benign(0.099) TCGA-R6-A8W8-01 12 78362475 78362475 C T NAV3 Nonsense_Mutation p.Q222* 0.39 TCGA-R6-A8W8-01 12 8290839 8290839 G C CLEC4A Missense_Mutation p.G224R 0.27 tolerated(0.52) benign(0.009) TCGA-R6-A8W8-01 12 91348387 91348387 C G CCER1 Missense_Mutation p.A45P 0.39 deleterious(0.01) probably_damaging(0.958) TCGA-R6-A8W8-01 12 95611564 95611564 G A VEZT 5'UTR 0.20 TCGA-R6-A8W8-01 13 107143633 107143633 T C EFNB2 3'UTR 0.46 TCGA-R6-A8W8-01 13 32900736 32900736 C G BRCA2 Missense_Mutation p.S206C 0.18 deleterious(0) probably_damaging(0.989) TCGA-R6-A8W8-01 13 61984737 61984737 A T PCDH20 3'UTR 0.67 TCGA-R6-A8W8-01 13 61986565 61986565 T G PCDH20 Missense_Mutation p.K556T 0.32 tolerated(0.31) benign(0.223) TCGA-R6-A8W8-01 13 77673005 77673005 C T MYCBP2 Missense_Mutation p.E2724K 0.24 benign(0.03) TCGA-R6-A8W8-01 13 78146277 78146277 G T SCEL Silent p.P166P 0.33 TCGA-R6-A8W8-01 13 88331212 88331212 A C SLITRK5 3'UTR 0.45 TCGA-R6-A8W8-01 14 47351346 47351346 A C MDGA2 Missense_Mutation p.L773V 0.34 tolerated(0.08) probably_damaging(0.997) TCGA-R6-A8W8-01 14 52481775 52481775 C T NID2 Missense_Mutation p.A1083T 0.40 tolerated(0.26) benign(0.219) TCGA-R6-A8W8-01 14 73987652 73987652 G A HEATR4 Nonsense_Mutation p.Q325* 0.41 TCGA-R6-A8W8-01 15 23811272 23811272 T C MKRN3 Missense_Mutation p.C115R 0.85 deleterious(0.02) probably_damaging(0.998) TCGA-R6-A8W8-01 15 25492311 25492311 G A SNORD115-40 3'Flank 0.21 TCGA-R6-A8W8-01 15 34150114 34150114 C T RYR3 Missense_Mutation p.T4714M 0.61 benign(0.269) TCGA-R6-A8W8-01 15 40558100 40558100 G A PAK6 Missense_Mutation p.D88N 0.48 tolerated(0.19) probably_damaging(0.998) TCGA-R6-A8W8-01 15 41195002 41195002 C T VPS18 Silent p.F795F 0.28 TCGA-R6-A8W8-01 15 57753959 57753959 C T CGNL1 Missense_Mutation p.R758C 0.60 deleterious(0) probably_damaging(0.997) TCGA-R6-A8W8-01 16 1279206 1279206 C T TPSB2 Missense_Mutation p.D161N 0.85 tolerated(0.34) benign(0.044) TCGA-R6-A8W8-01 16 19537184 19537185 - T CCP110 Intron 0.13 TCGA-R6-A8W8-01 16 30490734 30490734 G A ITGAL Silent p.L176L 0.19 TCGA-R6-A8W8-01 16 30773827 30773827 G A RNF40 5'UTR 0.25 TCGA-R6-A8W8-01 16 68012481 68012481 G A DPEP3 Missense_Mutation p.R180C 0.64 deleterious(0.01) possibly_damaging(0.448) TCGA-R6-A8W8-01 16 69362792 69362792 C T RP11-343C2.12 3'UTR 0.85 TCGA-R6-A8W8-01 17 1637131 1637131 C T WDR81 Silent p.N1600N 0.50 TCGA-R6-A8W8-01 17 1756455 1756455 G T RPA1 Missense_Mutation p.K111N 0.59 tolerated(0.07) benign(0.003) TCGA-R6-A8W8-01 17 18137690 18137690 C T LLGL1 Missense_Mutation p.T273M 0.70 tolerated(0.14) benign(0.009) TCGA-R6-A8W8-01 17 21319233 21319233 G A KCNJ12 Silent p.T193T 0.19 TCGA-R6-A8W8-01 17 34077291 34077291 C T GAS2L2 Silent p.V144V 0.46 TCGA-R6-A8W8-01 17 42858201 42858201 C A ADAM11 3'UTR 0.23 TCGA-R6-A8W8-01 17 44408220 44408220 G A LRRC37A Missense_Mutation p.A1193T 0.73 tolerated(0.13) benign(0.296) TCGA-R6-A8W8-01 17 44408942 44408942 C A LRRC37A Missense_Mutation p.N1433K 0.50 deleterious(0.01) benign(0.093) TCGA-R6-A8W8-01 17 48541618 48541618 G A ACSF2 Missense_Mutation p.R393Q 0.21 tolerated(0.11) possibly_damaging(0.905) TCGA-R6-A8W8-01 17 58372092 58372092 G A USP32 Silent p.H121H 0.29 TCGA-R6-A8W8-01 17 60342164 60342164 G A TBC1D3P2 3'Flank 0.16 TCGA-R6-A8W8-01 17 71196702 71196702 C G COG1 Intron 0.43 TCGA-R6-A8W8-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.48 tolerated(0.13) possibly_damaging(0.631) TCGA-R6-A8W8-01 17 7579536 7579536 C A TP53 Nonsense_Mutation p.E51* 0.25 TCGA-R6-A8W8-01 17 77769002 77769002 G A CBX8 Missense_Mutation p.P201L 0.28 deleterious(0) possibly_damaging(0.713) TCGA-R6-A8W8-01 17 79662869 79662869 G A HGS Silent p.A411A 0.45 TCGA-R6-A8W8-01 18 21044495 21044495 C T RIOK3 Missense_Mutation p.P149L 0.40 tolerated(0.06) benign(0.004) TCGA-R6-A8W8-01 18 25531067 25531067 T A CDH2 3'UTR 0.43 TCGA-R6-A8W8-01 18 28586985 28586985 G A DSC3 Silent p.T592T 0.46 TCGA-R6-A8W8-01 18 44266248 44266248 T C ST8SIA5 Missense_Mutation p.D153G 0.40 possibly_damaging(0.528) TCGA-R6-A8W8-01 18 59174693 59174693 A G CDH20 Missense_Mutation p.N306S 0.36 deleterious(0) probably_damaging(0.994) TCGA-R6-A8W8-01 18 67760024 67760025 - A RTTN Frame_Shift_Ins p.Y1307Lfs*30 0.33 TCGA-R6-A8W8-01 18 70415251 70415251 G A NETO1 3'UTR 0.18 TCGA-R6-A8W8-01 18 70532843 70532843 A C NETO1 Intron 0.38 TCGA-R6-A8W8-01 19 19745736 19745736 G A GMIP Silent p.G584G 0.30 TCGA-R6-A8W8-01 19 21719848 21719848 T C ZNF429 Silent p.H331H 0.29 TCGA-R6-A8W8-01 19 3593170 3593170 C T GIPC3 3'UTR 0.34 TCGA-R6-A8W8-01 19 39052025 39052025 G A RYR1 Silent p.A4185A 0.22 TCGA-R6-A8W8-01 19 49129197 49129197 C T SPHK2 Missense_Mutation p.T30I 0.28 tolerated_low_confidence(0.07) benign(0.01) TCGA-R6-A8W8-01 19 49633254 49633254 T C PPFIA3 Missense_Mutation p.L196P 0.09 tolerated(0.19) benign(0.1) TCGA-R6-A8W8-01 19 50248526 50248526 G A TSKS Missense_Mutation p.R374C 0.27 tolerated(0.12) probably_damaging(0.959) TCGA-R6-A8W8-01 19 51645917 51645917 C A SIGLEC7 Silent p.L97L 0.27 TCGA-R6-A8W8-01 19 54802103 54802103 G A LILRA3 Missense_Mutation p.A362V 0.18 deleterious(0.03) benign(0.191) TCGA-R6-A8W8-01 19 57175717 57175717 C T ZNF835 Missense_Mutation p.A284T 0.15 deleterious(0.02) possibly_damaging(0.616) TCGA-R6-A8W8-01 19 58452838 58452838 C T ZNF256 Silent p.R446R 0.07 TCGA-R6-A8W8-01 19 847999 847999 C G PRTN3 3'UTR 0.64 TCGA-R6-A8W8-01 1 111033752 111033756 GACAG - RP11-470L19.2 5'Flank 0.41 TCGA-R6-A8W8-01 1 12175723 12175723 A G TNFRSF8 Missense_Mutation p.N295D 0.38 deleterious(0.03) probably_damaging(0.987) TCGA-R6-A8W8-01 1 151316983 151316983 C T RFX5 Missense_Mutation p.R128H 0.12 tolerated(0.1) possibly_damaging(0.813) TCGA-R6-A8W8-01 1 154517337 154517337 C A TDRD10 Silent p.A288A 0.18 TCGA-R6-A8W8-01 1 155583316 155583316 C G MSTO1 Missense_Mutation p.I449M 0.14 tolerated(0.09) benign(0.002) TCGA-R6-A8W8-01 1 196706106 196706106 G A CFH Missense_Mutation p.G856R 0.52 deleterious(0.02) probably_damaging(0.995) TCGA-R6-A8W8-01 1 196964906 196964906 A C CFHR5 Silent p.R223R 0.16 TCGA-R6-A8W8-01 1 20975099 20975099 G A PINK1 Missense_Mutation p.G409R 0.26 deleterious(0.02) probably_damaging(0.976) TCGA-R6-A8W8-01 1 213068654 213068654 C T FLVCR1 3'UTR 0.28 TCGA-R6-A8W8-01 1 225685496 225685496 C T ENAH Missense_Mutation p.S586N 0.45 deleterious(0.04) benign(0.241) TCGA-R6-A8W8-01 1 240408852 240408852 T G FMN2 Intron 0.28 TCGA-R6-A8W8-01 1 32846846 32846846 C T BSDC1 Silent p.S144S 0.39 TCGA-R6-A8W8-01 1 57431590 57431590 G A C8B Missense_Mutation p.A11V 0.24 tolerated_low_confidence(0.72) benign(0.001) TCGA-R6-A8W8-01 1 67288089 67288089 A T WDR78 Silent p.S817S 0.23 TCGA-R6-A8W8-01 1 75172868 75172868 T A CRYZ Silent p.G217G 0.33 TCGA-R6-A8W8-01 1 7895980 7895980 C G PER3 Missense_Mutation p.L1116V 0.33 deleterious(0) benign(0.025) TCGA-R6-A8W8-01 1 90049550 90049550 G A LRRC8B Silent p.L447L 0.23 TCGA-R6-A8W8-01 20 18535015 18535015 C T SEC23B Missense_Mutation p.T710M 0.39 deleterious(0) probably_damaging(0.969) TCGA-R6-A8W8-01 20 1919079 1919080 - T SIRPA 3'UTR 0.29 TCGA-R6-A8W8-01 20 25450630 25450631 TG - NINL Frame_Shift_Del p.Q1117Efs*5 0.21 TCGA-R6-A8W8-01 20 31507971 31507971 G A EFCAB8 Missense_Mutation p.G212R 0.41 TCGA-R6-A8W8-01 20 31611455 31611455 C A BPIFB2 3'UTR 0.57 TCGA-R6-A8W8-01 20 39990216 39990216 C T EMILIN3 Missense_Mutation p.V665M 0.53 tolerated_low_confidence(0.28) benign(0.029) TCGA-R6-A8W8-01 20 44669098 44669098 C T SLC12A5 Silent p.Y256Y 0.34 TCGA-R6-A8W8-01 20 45169910 45169910 C T OCSTAMP 3'UTR 0.59 TCGA-R6-A8W8-01 20 57282250 57282250 C G NPEPL1 Missense_Mutation p.I298M 0.30 deleterious(0) benign(0.315) TCGA-R6-A8W8-01 20 60878680 60878680 C T ADRM1 Missense_Mutation p.S19F 0.33 deleterious(0) probably_damaging(0.939) TCGA-R6-A8W8-01 20 62585480 62585480 T G AL118506.1 Silent p.L158L 0.37 TCGA-R6-A8W8-01 22 17072732 17072732 T G CCT8L2 Missense_Mutation p.S237R 0.27 tolerated(0.47) benign(0.004) TCGA-R6-A8W8-01 22 29708357 29708357 G A GAS2L1 3'Flank 0.08 TCGA-R6-A8W8-01 22 30738219 30738219 C T SF3A1 Missense_Mutation p.E283K 0.69 tolerated(0.06) probably_damaging(0.982) TCGA-R6-A8W8-01 22 40055037 40055037 G A CACNA1I Missense_Mutation p.R749Q 0.30 tolerated(0.37) possibly_damaging(0.553) TCGA-R6-A8W8-01 22 50356423 50356425 CTC - PIM3 In_Frame_Del p.L235del 0.57 TCGA-R6-A8W8-01 2 125192205 125192205 G A CNTNAP5 Missense_Mutation p.R225H 0.48 tolerated(0.26) benign(0.344) TCGA-R6-A8W8-01 2 130739511 130739511 T C RAB6C 3'UTR 0.18 TCGA-R6-A8W8-01 2 1499881 1499881 C G TPO Missense_Mutation p.F709L 0.50 deleterious(0) probably_damaging(1) TCGA-R6-A8W8-01 2 155158056 155158056 A C GALNT13 Missense_Mutation p.E370D 0.28 deleterious(0.04) benign(0.256) TCGA-R6-A8W8-01 2 162875300 162875300 C T DPP4 Silent p.R453R 0.25 TCGA-R6-A8W8-01 2 166201217 166201217 G A SCN2A Silent p.K905K 0.27 TCGA-R6-A8W8-01 2 179345600 179345616 GAGGGGGTGTTGTACAA - PLEKHA3 Frame_Shift_Del p.E2Vfs*17 0.20 TCGA-R6-A8W8-01 2 179479651 179479651 C T TTN Missense_Mutation p.R16228H 0.26 TCGA-R6-A8W8-01 2 220149625 220149625 G A DNAJB2 Silent p.G297G 0.42 TCGA-R6-A8W8-01 2 239184491 239184491 G A PER2 Missense_Mutation p.T114I 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-R6-A8W8-01 2 25061488 25061488 G A ADCY3 Silent p.R453R 0.28 TCGA-R6-A8W8-01 2 31423364 31423364 C T CAPN14 Missense_Mutation p.E227K 0.32 tolerated(0.1) benign(0) TCGA-R6-A8W8-01 2 45171797 45171797 G A SIX3 Silent p.T299T 0.33 TCGA-R6-A8W8-01 2 61315669 61315669 T G KIAA1841 Intron 0.23 TCGA-R6-A8W8-01 2 69702913 69702913 T A AAK1 3'UTR 0.46 TCGA-R6-A8W8-01 2 89976340 89976340 C T IGKV2D-30 Missense_Mutation p.R71C 0.30 deleterious(0.04) benign(0.011) TCGA-R6-A8W8-01 2 97218310 97218310 G A ARID5A 3'UTR 0.59 TCGA-R6-A8W8-01 3 119434747 119434747 T C MAATS1 Intron 0.50 TCGA-R6-A8W8-01 3 13670520 13670520 C T FBLN2 Silent p.H895H 0.23 TCGA-R6-A8W8-01 3 140401781 140401781 A G TRIM42 Silent p.Q273Q 0.24 TCGA-R6-A8W8-01 3 15710424 15710424 C T ANKRD28 3'UTR 0.24 TCGA-R6-A8W8-01 3 186507592 186507592 C T EIF4A2 3'UTR 0.86 TCGA-R6-A8W8-01 3 38951598 38951598 G A SCN11A Missense_Mutation p.R354W 0.29 deleterious(0) probably_damaging(1) TCGA-R6-A8W8-01 3 42701321 42701321 G A ZBTB47 Splice_Site p.X491_splice 0.16 TCGA-R6-A8W8-01 3 51738338 51738338 G A TEX264 3'Flank 0.21 TCGA-R6-A8W8-01 3 9121758 9121758 C T SRGAP3 Missense_Mutation p.G146D 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-R6-A8W8-01 3 93605274 93605274 G T PROS1 Missense_Mutation p.P410H 0.41 deleterious(0.01) probably_damaging(0.971) TCGA-R6-A8W8-01 4 139979170 139979171 - A ELF2 3'UTR 0.14 TCGA-R6-A8W8-01 5 11023020 11023020 C A CTNND2 Missense_Mutation p.A954S 0.51 tolerated(0.45) benign(0.011) TCGA-R6-A8W8-01 5 138207959 138207959 C T LRRTM2 3'UTR 0.79 TCGA-R6-A8W8-01 5 140215322 140215322 G A PCDHA7 Missense_Mutation p.A452T 0.76 deleterious_low_confidence(0.02) benign(0.425) TCGA-R6-A8W8-01 5 140480414 140480414 G A PCDHB3 Missense_Mutation p.A61T 0.53 tolerated_low_confidence(0.37) benign(0.07) TCGA-R6-A8W8-01 5 140605707 140605707 T A PCDHB14 3'UTR 0.42 TCGA-R6-A8W8-01 5 161128572 161128572 C T GABRA6 Silent p.S385S 0.56 TCGA-R6-A8W8-01 5 176016132 176016140 TCTTCTCGA - CDHR2 In_Frame_Del p.S988_F990del 0.20 TCGA-R6-A8W8-01 5 177022422 177022422 C A TMED9 3'UTR 0.11 TCGA-R6-A8W8-01 5 179998294 179998294 G T CNOT6 Missense_Mutation p.R441S 0.83 tolerated(0.77) benign(0.038) TCGA-R6-A8W8-01 5 43175102 43175102 G A ZNF131 Missense_Mutation p.S546N 0.38 tolerated_low_confidence(0.35) benign(0.001) TCGA-R6-A8W8-01 5 7867768 7867768 C T FASTKD3 Silent p.K143K 0.60 TCGA-R6-A8W8-01 5 9337859 9337859 C T SEMA5A Missense_Mutation p.D64N 0.32 deleterious(0) probably_damaging(0.982) TCGA-R6-A8W8-01 5 94859012 94859012 G A TTC37 Silent p.L551L 0.77 TCGA-R6-A8W8-01 6 119281077 119281077 A C FAM184A 3'UTR 0.23 TCGA-R6-A8W8-01 6 143074677 143074677 C T HIVEP2 Missense_Mutation p.R2303Q 0.29 tolerated(0.36) benign(0.323) TCGA-R6-A8W8-01 6 143081229 143081229 G A HIVEP2 Missense_Mutation p.P2066S 0.16 tolerated(0.07) benign(0.035) TCGA-R6-A8W8-01 6 145174135 145174135 T C UTRN 3'UTR 0.36 TCGA-R6-A8W8-01 6 152751266 152751266 T G SYNE1 Missense_Mutation p.K1590T 0.58 benign(0.006) TCGA-R6-A8W8-01 6 159401884 159401884 G A RSPH3 Missense_Mutation p.R403C 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-R6-A8W8-01 6 160211791 160211791 G A MRPL18 Intron 0.19 TCGA-R6-A8W8-01 6 160908421 160908421 C T LPAL2 RNA 0.34 TCGA-R6-A8W8-01 6 26408042 26408042 C T BTN3A1 Missense_Mutation p.P193S 0.23 tolerated(1) possibly_damaging(0.541) TCGA-R6-A8W8-01 6 32008297 32008297 G A CYP21A2 Missense_Mutation p.E352K 0.29 deleterious(0) probably_damaging(0.994) TCGA-R6-A8W8-01 6 41176727 41176727 C A TREML3P RNA 0.10 TCGA-R6-A8W8-01 6 44279946 44279946 G A AARS2 Nonsense_Mutation p.R100* 0.21 TCGA-R6-A8W8-01 6 70769650 70769664 GAAAATGCTAAATCC - COL19A1 Intron 0.21 TCGA-R6-A8W8-01 7 113517782 113517782 T G PPP1R3A Missense_Mutation p.K1122T 0.36 deleterious(0) probably_damaging(0.992) TCGA-R6-A8W8-01 7 120911387 120911388 - A CPED1 Frame_Shift_Ins p.H927Tfs*4 0.42 TCGA-R6-A8W8-01 7 126883137 126883137 C T GRM8 Missense_Mutation p.R41Q 0.26 tolerated(0.06) probably_damaging(0.968) TCGA-R6-A8W8-01 7 151878988 151878988 C T KMT2C Missense_Mutation p.R1986Q 0.21 probably_damaging(0.97) TCGA-R6-A8W8-01 7 154429553 154429553 G T DPP6 Missense_Mutation p.G217V 0.57 deleterious(0) probably_damaging(0.991) TCGA-R6-A8W8-01 7 47897316 47897316 C T PKD1L1 Missense_Mutation p.G1493S 0.43 tolerated(0.25) benign(0.021) TCGA-R6-A8W8-01 7 6442159 6442159 A C RAC1 3'Flank 0.67 TCGA-R6-A8W8-01 7 73820092 73820092 C T CLIP2 3'UTR 0.59 TCGA-R6-A8W8-01 7 76909903 76909903 A G CCDC146 Missense_Mutation p.M618V 0.11 tolerated(0.57) benign(0.001) TCGA-R6-A8W8-01 7 81579725 81579725 T G CACNA2D1 Missense_Mutation p.T1087P 0.12 deleterious_low_confidence(0.02) benign(0.002) TCGA-R6-A8W8-01 7 8475318 8475318 G A NXPH1 5'UTR 0.95 TCGA-R6-A8W8-01 7 98579422 98579422 T C TRRAP Missense_Mutation p.W2882R 0.15 probably_damaging(0.986) TCGA-R6-A8W8-01 7 99473789 99473789 T C OR2AE1 Missense_Mutation p.T290A 0.69 deleterious(0) possibly_damaging(0.539) TCGA-R6-A8W8-01 8 117950643 117950643 C T AARD Missense_Mutation p.P54L 0.53 tolerated(0.84) benign(0.029) TCGA-R6-A8W8-01 8 118183343 118183343 G A SLC30A8 Silent p.V300V 0.36 TCGA-R6-A8W8-01 8 133142216 133142216 A G KCNQ3 Missense_Mutation p.F638L 0.80 tolerated(0.25) probably_damaging(0.998) TCGA-R6-A8W8-01 8 1574961 1574961 G A DLGAP2 Missense_Mutation p.A420T 0.77 tolerated(0.19) benign(0.002) TCGA-R6-A8W8-01 8 23560349 23560349 G A NKX2-6 Missense_Mutation p.T174M 0.32 deleterious(0) probably_damaging(1) TCGA-R6-A8W8-01 8 67475156 67475156 A T MYBL1 3'UTR 0.25 TCGA-R6-A8W8-01 8 77777742 77777742 T A ZFHX4 3'UTR 0.41 TCGA-R6-A8W8-01 8 85096594 85096594 A G RALYL 5'Flank 0.23 TCGA-R6-A8W8-01 8 87683188 87683188 T G CNGB3 Missense_Mutation p.E159D 0.78 tolerated(0.18) possibly_damaging(0.533) TCGA-R6-A8W8-01 9 103261069 103261069 C A TMEFF1 Missense_Mutation p.D73E 0.22 deleterious(0.02) benign(0.013) TCGA-R6-A8W8-01 9 121929458 121929458 C T BRINP1 Silent p.L730L 0.17 TCGA-R6-A8W8-01 9 135777079 135777079 A C TSC1 Missense_Mutation p.L800R 0.56 deleterious(0) probably_damaging(0.993) TCGA-R6-A8W8-01 9 137623484 137623484 C T COL5A1 Missense_Mutation p.A436V 0.30 possibly_damaging(0.712) TCGA-R6-A8W8-01 9 138011390 138011390 G A OLFM1 Missense_Mutation p.R257H 0.55 tolerated(0.1) probably_damaging(0.954) TCGA-R6-A8W8-01 9 138379062 138379062 C T PPP1R26 Silent p.A902A 0.24 TCGA-R6-A8W8-01 9 139243168 139243168 G T GPSM1 Silent p.T409T 0.25 TCGA-R6-A8W8-01 9 140389563 140389563 C T PNPLA7 Silent p.T683T 0.25 TCGA-R6-A8W8-01 9 140772632 140772632 G A CACNA1B Missense_Mutation p.V83I 0.38 tolerated(0.56) benign(0.021) TCGA-R6-A8W8-01 9 85616023 85616023 C T RASEF Missense_Mutation p.D409N 0.18 tolerated(0.12) probably_damaging(0.998) TCGA-R6-A8W8-01 9 96428130 96428130 G A PHF2 Silent p.P700P 0.22 TCGA-R6-A8W8-01 9 98643462 98643490 AATAGGTATTTGAGAGACTACCAAAGAGA - ERCC6L2 Frame_Shift_Del p.N131Rfs*19 0.25 TCGA-R6-A8W8-01 X 103268123 103268123 G T H2BFWT Missense_Mutation p.T37N 0.75 tolerated(0.07) benign(0.38) TCGA-R6-A8W8-01 X 125298723 125298723 C T DCAF12L2 Silent p.P395P 0.36 TCGA-R6-A8W8-01 X 125686171 125686171 C A DCAF12L1 Missense_Mutation p.A141S 0.50 tolerated(0.29) benign(0.045) TCGA-R6-A8W8-01 X 136649852 136649852 C A ZIC3 Silent p.G334G 0.82 TCGA-R6-A8W8-01 X 150348680 150348680 G A GPR50 Missense_Mutation p.V209M 0.81 tolerated(0.36) benign(0.054) TCGA-R6-A8W8-01 X 153069776 153069776 G A PDZD4 Missense_Mutation p.P448S 0.08 tolerated(0.84) benign(0.049) TCGA-R6-A8W8-01 X 30269482 30269482 A G MAGEB1 Missense_Mutation p.K291R 0.71 deleterious(0.04) benign(0.071) TCGA-R6-A8W8-01 X 34646331 34646331 A G TMEM47 3'UTR 0.45 TCGA-R6-A8W8-01 X 71357028 71357028 G A NHSL2 Missense_Mutation p.R282Q 0.83 deleterious(0) probably_damaging(0.998) TCGA-R6-A8W8-01 X 75003412 75003412 G A MAGEE2 Missense_Mutation p.P492L 0.68 deleterious(0) probably_damaging(0.997) TCGA-R6-A8W8-01 X 90692382 90692382 A T PABPC5 3'UTR 0.75 TCGA-R6-A8WC-01 10 102045851 102045851 C T BLOC1S2 Intron 0.60 TCGA-R6-A8WC-01 10 115896001 115896001 G A C10orf118 Missense_Mutation p.S444L 0.38 deleterious(0) probably_damaging(0.987) TCGA-R6-A8WC-01 10 118236283 118236283 A C PNLIPRP3 Missense_Mutation p.K431T 0.65 tolerated(0.2) benign(0.05) TCGA-R6-A8WC-01 10 128193537 128193537 G A C10orf90 Nonsense_Mutation p.Q78* 0.26 TCGA-R6-A8WC-01 10 26359037 26359037 T C MYO3A Intron 0.32 TCGA-R6-A8WC-01 10 38464759 38464759 C T RP11-508N22.9 Intron 0.53 TCGA-R6-A8WC-01 10 50833616 50833616 G A CHAT Missense_Mutation p.G284S 0.37 deleterious(0) probably_damaging(0.99) TCGA-R6-A8WC-01 10 70096998 70096999 AT - HNRNPH3 Frame_Shift_Del p.H7Qfs*5 0.21 TCGA-R6-A8WC-01 10 87361822 87361822 T G GRID1 3'UTR 0.59 TCGA-R6-A8WC-01 10 87361885 87361885 T A GRID1 3'UTR 0.55 TCGA-R6-A8WC-01 10 99349601 99349601 C T C10orf62 5'UTR 0.53 TCGA-R6-A8WC-01 11 117779198 117779198 G C TMPRSS13 Intron 0.93 TCGA-R6-A8WC-01 11 34680231 34680231 G C EHF Missense_Mutation p.K275N 0.89 deleterious(0) probably_damaging(0.999) TCGA-R6-A8WC-01 11 40136997 40136997 C A LRRC4C Silent p.L282L 0.88 TCGA-R6-A8WC-01 11 56237202 56237202 G C OR5M3 Missense_Mutation p.L258V 0.88 tolerated(0.18) benign(0.079) TCGA-R6-A8WC-01 11 71238684 71238684 A T KRTAP5-7 Missense_Mutation p.Q113L 0.72 deleterious_low_confidence(0.01) unknown(0) TCGA-R6-A8WC-01 11 73744868 73744868 G A C2CD3 3'Flank 0.43 TCGA-R6-A8WC-01 12 109703053 109703053 C T ACACB Missense_Mutation p.R2361C 0.18 deleterious(0) possibly_damaging(0.906) TCGA-R6-A8WC-01 12 31477720 31477720 C - AC024940.1 5'UTR 0.28 TCGA-R6-A8WC-01 12 40076598 40076598 T G C12orf40 Missense_Mutation p.L291R 0.41 tolerated(0.16) benign(0.33) TCGA-R6-A8WC-01 12 4737076 4737076 G A AKAP3 Missense_Mutation p.S331L 0.21 deleterious(0) probably_damaging(0.999) TCGA-R6-A8WC-01 12 4922582 4922583 - CCCCATAC KCNA6 3'UTR 0.15 TCGA-R6-A8WC-01 12 53069172 53069172 G A KRT1 Silent p.S580S 0.59 TCGA-R6-A8WC-01 12 53677886 53677886 G A ESPL1 Missense_Mutation p.R1041H 0.25 deleterious(0) possibly_damaging(0.581) TCGA-R6-A8WC-01 12 57923208 57923208 C A MBD6 3'UTR 0.50 TCGA-R6-A8WC-01 12 69652800 69652800 C T CPSF6 Silent p.S375S 0.29 TCGA-R6-A8WC-01 12 89984065 89984066 - T ATP2B1 3'UTR 0.59 TCGA-R6-A8WC-01 13 107822333 107822333 C T FAM155A 3'UTR 0.71 TCGA-R6-A8WC-01 13 113834524 113834525 - TTC PCID2 In_Frame_Ins p.E323dup 0.26 TCGA-R6-A8WC-01 13 29012409 29012409 G A FLT1 Silent p.L154L 0.19 TCGA-R6-A8WC-01 13 37393677 37393678 - G RFXAP Frame_Shift_Ins p.S64Qfs*9 0.21 TCGA-R6-A8WC-01 13 46562991 46562991 G A ZC3H13 Nonsense_Mutation p.R396* 0.23 TCGA-R6-A8WC-01 14 21464788 21464788 C T METTL17 Missense_Mutation p.R395W 0.71 deleterious(0.02) possibly_damaging(0.448) TCGA-R6-A8WC-01 14 23993643 23993643 G A ZFHX2 Silent p.D1836D 0.60 TCGA-R6-A8WC-01 14 42356204 42356204 C A LRFN5 Missense_Mutation p.H126N 0.37 deleterious(0.01) possibly_damaging(0.9) TCGA-R6-A8WC-01 15 23810854 23810854 G A MKRN3 5'UTR 0.31 TCGA-R6-A8WC-01 15 33952417 33952417 C T RYR3 Missense_Mutation p.A1472V 0.60 benign(0.439) TCGA-R6-A8WC-01 15 43931190 43931190 A C CATSPER2 Missense_Mutation p.F252V 0.46 tolerated(0.05) benign(0.192) TCGA-R6-A8WC-01 15 43931194 43931194 G A CATSPER2 Silent p.I250I 0.46 TCGA-R6-A8WC-01 15 51350297 51350297 G A TNFAIP8L3 Silent p.N220N 0.59 TCGA-R6-A8WC-01 15 77907093 77907093 G A LINGO1 Missense_Mutation p.R386W 0.30 deleterious(0.01) possibly_damaging(0.702) TCGA-R6-A8WC-01 15 79057042 79057042 G A ADAMTS7 Missense_Mutation p.T1425I 0.35 deleterious(0) probably_damaging(0.909) TCGA-R6-A8WC-01 15 83932270 83932270 T C BNC1 Missense_Mutation p.E578G 0.68 deleterious(0.01) benign(0.04) TCGA-R6-A8WC-01 15 88726700 88726700 A G NTRK3 Missense_Mutation p.L115P 0.62 deleterious(0) probably_damaging(1) TCGA-R6-A8WC-01 16 135445 135445 G A MPG Missense_Mutation p.G189D 0.53 deleterious(0) probably_damaging(1) TCGA-R6-A8WC-01 16 1500530 1500530 C T CLCN7 Missense_Mutation p.G529R 0.42 deleterious(0) probably_damaging(0.997) TCGA-R6-A8WC-01 16 2161095 2161095 G A PKD1 Missense_Mutation p.A1358V 0.40 benign(0.021) TCGA-R6-A8WC-01 16 3139484 3139484 G A ZSCAN10 Missense_Mutation p.R596C 0.50 deleterious(0.03) probably_damaging(1) TCGA-R6-A8WC-01 16 31478090 31478090 G A ARMC5 Silent p.R896R 0.43 TCGA-R6-A8WC-01 16 49670811 49670811 C T ZNF423 Missense_Mutation p.R751H 0.50 deleterious(0.01) possibly_damaging(0.65) TCGA-R6-A8WC-01 16 65032732 65032732 C G CDH11 Missense_Mutation p.G86R 0.62 deleterious(0.02) probably_damaging(0.984) TCGA-R6-A8WC-01 16 70694426 70694426 G T IL34 3'UTR 0.18 TCGA-R6-A8WC-01 16 77246855 77246855 C T SYCE1L 3'UTR 0.62 TCGA-R6-A8WC-01 16 845705 845705 G A CHTF18 Silent p.Q732Q 0.63 TCGA-R6-A8WC-01 16 88945831 88945831 C T CBFA2T3 Silent p.S503S 0.32 TCGA-R6-A8WC-01 17 10404047 10404047 C T MYH1 Missense_Mutation p.R1254H 0.44 deleterious(0.04) benign(0.012) TCGA-R6-A8WC-01 17 11461983 11461983 A T SHISA6 3'UTR 0.89 TCGA-R6-A8WC-01 17 26901110 26901110 A G ALDOC Silent p.R258R 0.29 TCGA-R6-A8WC-01 17 33749083 33749083 C T SLFN12 Nonsense_Mutation p.W322* 0.68 TCGA-R6-A8WC-01 17 37865644 37865644 C T ERBB2 Silent p.D171D 0.03 TCGA-R6-A8WC-01 17 37868208 37868208 C T ERBB2 Missense_Mutation p.S310F 0.92 deleterious(0) probably_damaging(0.994) TCGA-R6-A8WC-01 17 38635936 38635936 C T TNS4 Missense_Mutation p.V634I 0.02 tolerated(0.47) benign(0.09) TCGA-R6-A8WC-01 17 39253985 39253985 C G KRTAP4-8 Missense_Mutation p.V118L 0.03 tolerated(0.17) unknown(0) TCGA-R6-A8WC-01 17 39333768 39333768 G A KRTAP4-2 3'UTR 0.03 TCGA-R6-A8WC-01 17 39633978 39633978 C A KRT35 Nonsense_Mutation p.E338* 0.02 TCGA-R6-A8WC-01 17 39998420 39998420 G T KLHL10 Missense_Mutation p.E180D 0.41 tolerated(0.84) benign(0.008) TCGA-R6-A8WC-01 17 40354821 40354821 C T STAT5B Missense_Mutation p.A695T 0.47 tolerated(0.23) possibly_damaging(0.811) TCGA-R6-A8WC-01 17 40646421 40646421 T C ATP6V0A1 Missense_Mutation p.L422S 0.20 deleterious(0) probably_damaging(0.968) TCGA-R6-A8WC-01 17 53470841 53470841 C A MMD 3'UTR 0.56 TCGA-R6-A8WC-01 17 57917975 57917976 - T VMP1 3'UTR 0.19 TCGA-R6-A8WC-01 17 61987063 61987063 G A CSHL1 3'Flank 0.29 TCGA-R6-A8WC-01 17 7351982 7351982 G A CHRNB1 Missense_Mutation p.R232H 0.45 tolerated(0.68) benign(0.002) TCGA-R6-A8WC-01 17 73910945 73910945 G A FBF1 Silent p.A884A 0.33 TCGA-R6-A8WC-01 17 7579414 7579414 C T TP53 Nonsense_Mutation p.W91* 0.85 TCGA-R6-A8WC-01 17 76137070 76137070 C T TMC8 Silent p.H686H 0.51 TCGA-R6-A8WC-01 17 79508409 79508409 C T C17orf70 Missense_Mutation p.E814K 0.31 deleterious(0.01) possibly_damaging(0.53) TCGA-R6-A8WC-01 17 79981716 79981721 GTGACT - LRRC45 In_Frame_Del p.D67_C68del 0.44 TCGA-R6-A8WC-01 17 8024241 8024241 G T HES7 3'UTR 0.38 TCGA-R6-A8WC-01 18 48591854 48591854 T A SMAD4 Missense_Mutation p.F339L 0.83 deleterious(0.03) probably_damaging(1) TCGA-R6-A8WC-01 18 48604654 48604656 TGA - SMAD4 In_Frame_Del p.D494del 0.81 TCGA-R6-A8WC-01 19 1879973 1879973 G A ABHD17A Silent p.S209S 0.81 TCGA-R6-A8WC-01 19 36159273 36159273 G A UPK1A Intron 0.35 TCGA-R6-A8WC-01 19 37211466 37211466 G A ZNF567 Missense_Mutation p.E583K 0.98 deleterious(0) probably_damaging(0.994) TCGA-R6-A8WC-01 19 37241190 37241190 C T ZNF850 Missense_Mutation p.R251K 0.51 tolerated(1) benign(0.001) TCGA-R6-A8WC-01 19 39123269 39123270 - CAG EIF3K In_Frame_Ins p.Q151dup 0.37 TCGA-R6-A8WC-01 19 43371087 43371087 G A PSG1 3'Flank 0.34 TCGA-R6-A8WC-01 19 47969480 47969480 C T SLC8A2 Missense_Mutation p.D61N 0.79 tolerated(0.36) benign(0.003) TCGA-R6-A8WC-01 19 49164931 49164931 C T NTN5 3'UTR 0.53 TCGA-R6-A8WC-01 19 54307316 54307316 G C NLRP12 Silent p.T825T 0.22 TCGA-R6-A8WC-01 19 55098837 55098837 T G LILRA2 3'UTR 0.90 TCGA-R6-A8WC-01 19 55424098 55424098 G T NCR1 Silent p.R258R 0.87 TCGA-R6-A8WC-01 19 55992629 55992629 G T ZNF628 Missense_Mutation p.E23D 0.63 tolerated(0.09) benign(0.028) TCGA-R6-A8WC-01 1 100606480 100606480 G A TRMT13 Missense_Mutation p.G192R 0.47 deleterious(0) probably_damaging(1) TCGA-R6-A8WC-01 1 110765765 110765765 C T KCNC4 Silent p.G286G 0.41 TCGA-R6-A8WC-01 1 112233987 112233987 G A RAP1A Missense_Mutation p.R2H 0.42 deleterious(0.02) benign(0.002) TCGA-R6-A8WC-01 1 11589626 11589626 G A PTCHD2 Missense_Mutation p.A938T 0.35 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-R6-A8WC-01 1 1159213 1159213 G A SDF4 Silent p.D154D 0.44 TCGA-R6-A8WC-01 1 13839644 13839644 C A LRRC38 Nonsense_Mutation p.E149* 0.45 TCGA-R6-A8WC-01 1 1569848 1569849 - CT MMP23B Frame_Shift_Ins p.E342Wfs*16 0.25 TCGA-R6-A8WC-01 1 15897992 15897995 TGTT - DNAJC16 3'UTR 0.52 TCGA-R6-A8WC-01 1 166826666 166826666 A C TADA1 3'UTR 0.67 TCGA-R6-A8WC-01 1 181058008 181058008 C T IER5 5'UTR 0.32 TCGA-R6-A8WC-01 1 186115011 186115011 G A HMCN1 Missense_Mutation p.G4855E 0.49 probably_damaging(0.999) TCGA-R6-A8WC-01 1 197316582 197316582 G T CRB1 Missense_Mutation p.D321Y 0.46 deleterious(0.01) probably_damaging(0.951) TCGA-R6-A8WC-01 1 214169818 214169818 G A PROX1 5'UTR 0.07 TCGA-R6-A8WC-01 1 236911004 236911004 C T ACTN2 Missense_Mutation p.R482W 0.60 deleterious(0) probably_damaging(0.965) TCGA-R6-A8WC-01 1 237026804 237026804 C T MTR Silent p.H785H 0.07 TCGA-R6-A8WC-01 1 23885934 23885946 AGAGGTGCCCCAA - ID3 5'UTR 0.39 TCGA-R6-A8WC-01 1 240656217 240656217 C T GREM2 3'UTR 0.73 TCGA-R6-A8WC-01 1 247695139 247695139 G A OR2C3 Silent p.A225A 0.26 TCGA-R6-A8WC-01 1 248084898 248084898 C T OR2T8 Silent p.F193F 0.13 TCGA-R6-A8WC-01 1 248436538 248436538 G A OR2T33 Silent p.F193F 0.23 TCGA-R6-A8WC-01 1 57202804 57202804 T G C1orf168 Missense_Mutation p.E583D 0.48 tolerated(0.23) benign(0.021) TCGA-R6-A8WC-01 1 7840399 7840399 C T VAMP3 3'UTR 0.31 TCGA-R6-A8WC-01 1 908701 908701 A G PLEKHN1 Missense_Mutation p.T430A 0.47 tolerated(0.1) benign(0.05) TCGA-R6-A8WC-01 20 32255213 32255213 G A ACTL10 5'UTR 0.50 TCGA-R6-A8WC-01 20 49626457 49626457 C T KCNG1 Missense_Mutation p.R140H 0.27 deleterious(0.04) probably_damaging(1) TCGA-R6-A8WC-01 21 10862949 10862949 A G IGHV1OR21-1 Missense_Mutation p.K82R 0.13 tolerated(0.07) benign(0.03) TCGA-R6-A8WC-01 21 31587288 31587288 C A CLDN8 3'UTR 0.55 TCGA-R6-A8WC-01 21 39671196 39671196 C T KCNJ15 Missense_Mutation p.H5Y 0.36 deleterious_low_confidence(0.01) benign(0.069) TCGA-R6-A8WC-01 21 44513332 44513332 C T U2AF1 Silent p.E201E 0.91 TCGA-R6-A8WC-01 22 30414045 30414045 G T MTMR3 Missense_Mutation p.D602Y 0.32 deleterious(0) probably_damaging(0.945) TCGA-R6-A8WC-01 22 31724828 31724828 C G PATZ1 Missense_Mutation p.E530D 0.15 tolerated(0.14) benign(0.217) TCGA-R6-A8WC-01 22 38610597 38610597 C T MAFF Silent p.R69R 0.19 TCGA-R6-A8WC-01 22 50716279 50716279 C T PLXNB2 Intron 0.24 TCGA-R6-A8WC-01 22 50716391 50716391 C T PLXNB2 Missense_Mutation p.G1647R 0.19 deleterious(0.04) benign(0.016) TCGA-R6-A8WC-01 22 50885423 50885423 G A SBF1 3'UTR 0.19 TCGA-R6-A8WC-01 22 51135698 51135698 G - SHANK3 Frame_Shift_Del p.A447Rfs*49 0.27 TCGA-R6-A8WC-01 2 125521620 125521620 C T CNTNAP5 Missense_Mutation p.A809V 0.33 deleterious(0.04) benign(0.012) TCGA-R6-A8WC-01 2 131674056 131674056 C T ARHGEF4 5'Flank 0.35 TCGA-R6-A8WC-01 2 158389851 158389851 C A ACVR1C 3'UTR 0.29 TCGA-R6-A8WC-01 2 160735803 160735803 G A LY75-CD302 Silent p.D494D 0.22 TCGA-R6-A8WC-01 2 173885435 173885435 G A RAPGEF4 Missense_Mutation p.D749N 0.40 tolerated(0.07) benign(0.016) TCGA-R6-A8WC-01 2 190927070 190927070 G A MSTN Missense_Mutation p.P85S 0.47 deleterious(0) possibly_damaging(0.766) TCGA-R6-A8WC-01 2 196573445 196573445 A C SLC39A10 Missense_Mutation p.E484D 0.86 tolerated(0.56) benign(0.185) TCGA-R6-A8WC-01 2 237150207 237150207 G A ASB18 Intron 0.23 TCGA-R6-A8WC-01 2 30954231 30954231 T A CAPN13 Silent p.G654G 0.29 TCGA-R6-A8WC-01 2 50463983 50463983 C T NRXN1 Missense_Mutation p.V1204I 0.38 tolerated(0.68) benign(0.005) TCGA-R6-A8WC-01 2 50574574 50574574 C T NRXN1 Intron 0.31 TCGA-R6-A8WC-01 2 96947598 96947598 G A SNRNP200 Silent p.L1660L 0.26 TCGA-R6-A8WC-01 3 10371963 10371964 AA - ATP2B2 Intron 0.24 TCGA-R6-A8WC-01 3 10400462 10400462 C T ATP2B2 Silent p.P683P 0.20 TCGA-R6-A8WC-01 3 121410779 121410779 G A GOLGB1 Nonsense_Mutation p.R2478* 0.51 TCGA-R6-A8WC-01 3 131181486 131181486 G C MRPL3 3'UTR 0.66 TCGA-R6-A8WC-01 3 140407024 140407024 A G TRIM42 Silent p.S500S 0.33 TCGA-R6-A8WC-01 3 38888452 38888452 C A SCN11A Missense_Mutation p.M1703I 0.35 deleterious(0.01) benign(0.03) TCGA-R6-A8WC-01 3 51864628 51864628 G A IQCF3 Silent p.A92A 0.64 TCGA-R6-A8WC-01 3 5252815 5252815 G C EDEM1 Missense_Mutation p.A532P 0.62 deleterious(0) probably_damaging(0.999) TCGA-R6-A8WC-01 3 68588032 68588032 G T FAM19A1 Splice_Site p.X128_splice 0.56 TCGA-R6-A8WC-01 4 113569548 113569548 T C LARP7 Intron 0.47 TCGA-R6-A8WC-01 4 126389802 126389802 T A FAT4 Missense_Mutation p.L4012H 0.43 benign(0.022) TCGA-R6-A8WC-01 4 166915537 166915537 G T TLL1 Missense_Mutation p.L122F 0.27 tolerated(0.75) benign(0.001) TCGA-R6-A8WC-01 4 186112044 186112044 A T KIAA1430 Missense_Mutation p.L103M 0.42 tolerated(0.18) benign(0.049) TCGA-R6-A8WC-01 4 57522152 57522152 G A HOPX Silent p.T23T 0.47 TCGA-R6-A8WC-01 4 62599270 62599270 C A LPHN3 Nonsense_Mutation p.S398* 0.41 TCGA-R6-A8WC-01 4 7055827 7055827 C T TADA2B Silent p.P103P 0.50 TCGA-R6-A8WC-01 4 81967109 81967109 A C BMP3 Missense_Mutation p.Q178H 0.41 tolerated(0.14) benign(0.015) TCGA-R6-A8WC-01 4 96091308 96091308 T A UNC5C Missense_Mutation p.D876V 0.41 deleterious(0) probably_damaging(0.997) TCGA-R6-A8WC-01 5 113740309 113740309 G T KCNN2 Missense_Mutation p.D253Y 0.94 deleterious(0) probably_damaging(0.974) TCGA-R6-A8WC-01 5 134871157 134871157 C T NEUROG1 Missense_Mutation p.R75H 1.00 deleterious(0.04) probably_damaging(0.999) TCGA-R6-A8WC-01 5 13839580 13839580 A G DNAH5 Missense_Mutation p.Y1923H 0.87 benign(0.403) TCGA-R6-A8WC-01 5 140250534 140250534 G A PCDHA11 Missense_Mutation p.G616S 0.42 tolerated_low_confidence(0.21) benign(0.006) TCGA-R6-A8WC-01 5 140798649 140798649 A C PCDHGB7 Missense_Mutation p.E408A 0.56 tolerated(0.13) benign(0.004) TCGA-R6-A8WC-01 5 178581177 178581177 C T ADAMTS2 Missense_Mutation p.D419N 0.88 deleterious(0) probably_damaging(1) TCGA-R6-A8WC-01 5 33937727 33937727 C T RXFP3 Silent p.I294I 1.00 TCGA-R6-A8WC-01 5 35646850 35646850 A C SPEF2 Missense_Mutation p.N223H 0.56 deleterious(0.04) probably_damaging(0.998) TCGA-R6-A8WC-01 5 59892788 59892788 A C DEPDC1B 3'UTR 0.31 TCGA-R6-A8WC-01 5 67597262 67597262 G A PIK3R1 3'UTR 0.35 TCGA-R6-A8WC-01 5 75893335 75893335 A G IQGAP2 Missense_Mutation p.K327E 0.42 tolerated(0.85) benign(0.001) TCGA-R6-A8WC-01 5 79968645 79968645 C T MSH3 Missense_Mutation p.A332V 0.89 deleterious(0.01) probably_damaging(0.938) TCGA-R6-A8WC-01 6 107955278 107955278 C T SOBP Silent p.P410P 0.52 TCGA-R6-A8WC-01 6 134493863 134493863 C G SGK1 Missense_Mutation p.R295P 0.57 deleterious(0) probably_damaging(0.993) TCGA-R6-A8WC-01 6 146755745 146755745 C T GRM1 Missense_Mutation p.A1133V 0.46 tolerated_low_confidence(0.43) benign(0.023) TCGA-R6-A8WC-01 6 153042927 153042927 G A MYCT1 Missense_Mutation p.G83R 0.31 deleterious(0) probably_damaging(0.976) TCGA-R6-A8WC-01 6 159653833 159653833 G A FNDC1 Missense_Mutation p.M763I 0.46 tolerated_low_confidence(0.19) unknown(0) TCGA-R6-A8WC-01 6 26217425 26217427 AAG - HIST1H2AE In_Frame_Del p.K76del 0.28 TCGA-R6-A8WC-01 6 33284640 33284640 C A ZBTB22 Silent p.S18S 0.17 TCGA-R6-A8WC-01 6 33646233 33646233 G A ITPR3 Silent p.T1228T 0.33 TCGA-R6-A8WC-01 6 345905 345905 C T DUSP22 Silent p.R80R 0.20 TCGA-R6-A8WC-01 6 39880077 39880077 G C MOCS1 Missense_Mutation p.I304M 0.22 deleterious(0) probably_damaging(0.991) TCGA-R6-A8WC-01 6 42832452 42832452 G A GLTSCR1L Silent p.E836E 0.32 TCGA-R6-A8WC-01 6 57498976 57498976 T G PRIM2 3'UTR 0.10 TCGA-R6-A8WC-01 6 6589069 6589069 C T LY86 Silent p.S34S 0.33 TCGA-R6-A8WC-01 6 75831041 75831041 C A COL12A1 Nonsense_Mutation p.E2355* 0.29 TCGA-R6-A8WC-01 7 138279224 138279224 C T SVOPL 3'Flank 0.48 TCGA-R6-A8WC-01 7 141464471 141464471 C A TAS2R3 Missense_Mutation p.F171L 0.25 tolerated(0.68) benign(0.015) TCGA-R6-A8WC-01 7 14722292 14722292 G A DGKB Silent p.V307V 0.21 TCGA-R6-A8WC-01 7 149516919 149516920 - C SSPO RNA 0.40 TCGA-R6-A8WC-01 7 21583082 21583082 G A DNAH11 Silent p.T73T 0.19 TCGA-R6-A8WC-01 7 38331377 38331377 A C TRGV11 Nonsense_Mutation p.L50* 0.36 TCGA-R6-A8WC-01 7 4917593 4917593 A G RADIL Missense_Mutation p.S60P 0.56 deleterious(0) probably_damaging(0.997) TCGA-R6-A8WC-01 7 82546042 82546042 T - PCLO Frame_Shift_Del p.T3754Pfs*13 0.37 TCGA-R6-A8WC-01 8 11640908 11640908 G A NEIL2 Missense_Mutation p.G230R 0.73 deleterious(0) probably_damaging(1) TCGA-R6-A8WC-01 8 12883130 12883130 A C KIAA1456 3'UTR 0.44 TCGA-R6-A8WC-01 8 143851225 143851225 G T LYNX1 Intron 0.57 TCGA-R6-A8WC-01 8 17092319 17092319 G A CNOT7 Missense_Mutation p.P175L 0.43 deleterious(0.01) probably_damaging(0.962) TCGA-R6-A8WC-01 8 2824141 2824141 C - CSMD1 Frame_Shift_Del p.H3018Ifs*18 0.23 TCGA-R6-A8WC-01 8 41554052 41554052 C T ANK1 Missense_Mutation p.R971H 0.24 deleterious(0) probably_damaging(0.988) TCGA-R6-A8WC-01 8 48744396 48744396 A G PRKDC Silent p.V2747V 0.52 TCGA-R6-A8WC-01 8 55372161 55372161 C T SOX17 Missense_Mutation p.P284L 0.52 deleterious(0.03) benign(0.135) TCGA-R6-A8WC-01 8 95941310 95941310 G A TP53INP1 3'UTR 0.34 TCGA-R6-A8WC-01 9 109691105 109691105 G A ZNF462 Missense_Mutation p.E1638K 0.21 benign(0.013) TCGA-R6-A8WC-01 9 119109306 119109306 C T PAPPA Missense_Mutation p.T1261M 0.74 tolerated(0.33) benign(0) TCGA-R6-A8WC-01 9 130980992 130980992 C T DNM1 Missense_Mutation p.R123C 0.79 deleterious(0) probably_damaging(0.995) TCGA-R6-A8WC-01 9 136198638 136198651 GTCAAGGACTCAGA - SURF6 3'UTR 0.10 TCGA-R6-A8WC-01 9 137710737 137710737 C T COL5A1 Missense_Mutation p.P1461L 0.20 unknown(0) TCGA-R6-A8WC-01 9 21974785 21974795 GTCAGCCGAAG - CDKN2A Frame_Shift_Del p.P11Lfs*29 0.86 TCGA-R6-A8WC-01 9 77257546 77257546 A G RORB Missense_Mutation p.K151R 0.92 tolerated(0.3) benign(0.119) TCGA-R6-A8WC-01 9 91991861 91991861 G A SEMA4D 3'UTR 0.92 TCGA-R6-A8WC-01 X 120009285 120009285 G A CT47B1 Silent p.S80S 0.99 TCGA-R6-A8WC-01 X 14749763 14749763 G A GLRA2 3'UTR 0.48 TCGA-R6-A8WC-01 X 154005130 154005130 G A DKC1 Silent p.L511L 0.43 TCGA-R6-A8WC-01 X 155234213 155234213 C A IL9R Missense_Mutation p.Q188K 0.20 tolerated(0.11) benign(0.06) TCGA-R6-A8WC-01 X 18662688 18662690 CTT - RS1 In_Frame_Del p.K128del 0.53 TCGA-R6-A8WC-01 X 69459688 69459688 C T AWAT1 Missense_Mutation p.R246C 0.63 deleterious(0.01) benign(0.016) TCGA-R6-A8WG-01 10 101654708 101654708 T C DNMBP Missense_Mutation p.I1051V 0.18 tolerated(0.37) benign(0.268) TCGA-R6-A8WG-01 10 118451962 118451962 G A HSPA12A Missense_Mutation p.A188V 0.49 tolerated(0.36) benign(0.01) TCGA-R6-A8WG-01 10 21112176 21112176 T C NEBL Silent p.E641E 0.15 TCGA-R6-A8WG-01 10 28034750 28034750 C A MKX 5'UTR 0.51 TCGA-R6-A8WG-01 10 79595550 79595550 C T DLG5 Missense_Mutation p.R523Q 0.26 deleterious(0) probably_damaging(0.99) TCGA-R6-A8WG-01 10 86132008 86132008 G A CCSER2 Silent p.S400S 0.58 TCGA-R6-A8WG-01 11 103044888 103044888 C G DYNC2H1 Missense_Mutation p.T1888S 0.53 benign(0) TCGA-R6-A8WG-01 11 113669420 113669420 C T USP28 3'UTR 0.64 TCGA-R6-A8WG-01 11 12315131 12315131 G A MICALCL Silent p.S51S 0.63 TCGA-R6-A8WG-01 11 123900725 123900725 C T OR10G8 Silent p.T132T 0.55 TCGA-R6-A8WG-01 11 16760076 16760076 T A C11orf58 5'UTR 0.71 TCGA-R6-A8WG-01 11 5255229 5255229 T A HBD Missense_Mutation p.N103Y 0.06 deleterious(0.02) probably_damaging(1) TCGA-R6-A8WG-01 11 5269622 5269622 T G HBG1 Silent p.A137A 0.73 TCGA-R6-A8WG-01 11 55135763 55135763 T G OR4A15 Missense_Mutation p.F135C 0.65 deleterious_low_confidence(0.01) possibly_damaging(0.465) TCGA-R6-A8WG-01 11 608359 608359 C T PHRF1 Missense_Mutation p.P967L 0.44 deleterious(0) probably_damaging(0.975) TCGA-R6-A8WG-01 11 76980066 76980066 A G GDPD4 Missense_Mutation p.L176P 0.10 deleterious(0) probably_damaging(0.965) TCGA-R6-A8WG-01 12 21033792 21033792 T C SLCO1B3 Silent p.N445N 0.41 TCGA-R6-A8WG-01 12 29464815 29464815 G A FAR2 Splice_Site p.X296_splice 0.32 TCGA-R6-A8WG-01 12 53670934 53670934 A G ESPL1 Missense_Mutation p.R670G 0.36 deleterious(0.03) benign(0.024) TCGA-R6-A8WG-01 12 6457242 6457242 G A SCNN1A Nonsense_Mutation p.Q662* 0.25 TCGA-R6-A8WG-01 12 6664942 6664942 C T IFFO1 Missense_Mutation p.R85H 0.41 deleterious(0.02) benign(0.004) TCGA-R6-A8WG-01 12 68642496 68642497 - A IL22 3'UTR 0.31 TCGA-R6-A8WG-01 12 70933755 70933755 C T PTPRB Missense_Mutation p.R1881Q 0.26 deleterious(0.03) possibly_damaging(0.674) TCGA-R6-A8WG-01 12 78522596 78522596 C T NAV3 Missense_Mutation p.P1464L 0.16 deleterious(0.02) probably_damaging(1) TCGA-R6-A8WG-01 14 102252393 102252393 G A PPP2R5C Intron 0.28 TCGA-R6-A8WG-01 14 106539203 106539203 T G IGHV1-8 Missense_Mutation p.N76T 0.21 tolerated(0.48) benign(0.005) TCGA-R6-A8WG-01 14 19904514 19904514 T C BMS1P18 RNA 0.22 TCGA-R6-A8WG-01 14 60592386 60592386 A C PCNXL4 Missense_Mutation p.S804R 0.21 deleterious(0.01) probably_damaging(0.956) TCGA-R6-A8WG-01 14 63757678 63757678 T G RHOJ Missense_Mutation p.I194S 0.22 deleterious(0.01) possibly_damaging(0.793) TCGA-R6-A8WG-01 14 92908448 92908448 G A SLC24A4 Missense_Mutation p.E137K 0.28 deleterious(0.01) possibly_damaging(0.786) TCGA-R6-A8WG-01 14 99976510 99976510 C T CCNK Silent p.L378L 0.29 TCGA-R6-A8WG-01 15 20588507 20588507 A C HERC2P3 RNA 0.20 TCGA-R6-A8WG-01 15 28000611 28000611 A G OCA2 Missense_Mutation p.F814L 0.21 deleterious(0.05) possibly_damaging(0.841) TCGA-R6-A8WG-01 15 40544554 40544554 G T C15orf56 Silent p.R140R 0.53 TCGA-R6-A8WG-01 15 51828604 51828604 T C DMXL2 Silent p.R691R 0.22 TCGA-R6-A8WG-01 15 65674195 65674195 C G IGDCC4 3'UTR 0.51 TCGA-R6-A8WG-01 15 66727483 66727483 G T MAP2K1 Missense_Mutation p.D67Y 0.25 deleterious(0) probably_damaging(0.941) TCGA-R6-A8WG-01 15 88121326 88121326 A C LINC00052 RNA 0.30 TCGA-R6-A8WG-01 16 2024606 2024606 G A TBL3 Missense_Mutation p.R102H 0.25 deleterious(0.01) probably_damaging(0.969) TCGA-R6-A8WG-01 16 67470654 67470654 A T HSD11B2 Silent p.V322V 0.34 TCGA-R6-A8WG-01 16 68289777 68289777 C T PLA2G15 Missense_Mutation p.T204M 0.24 tolerated(0.28) benign(0.318) TCGA-R6-A8WG-01 16 70562980 70562980 A G SF3B3 Missense_Mutation p.Y92C 0.19 deleterious(0) probably_damaging(0.996) TCGA-R6-A8WG-01 16 77389970 77389970 C T ADAMTS18 Missense_Mutation p.G443S 0.45 deleterious(0) probably_damaging(1) TCGA-R6-A8WG-01 16 77822749 77822749 G A VAT1L Missense_Mutation p.R57Q 0.35 tolerated(0.13) benign(0.037) TCGA-R6-A8WG-01 16 78133583 78133583 C T WWOX 5'UTR 0.31 TCGA-R6-A8WG-01 16 79629114 79629114 C T MAF Intron 0.33 TCGA-R6-A8WG-01 17 37881323 37881323 G A ERBB2 Missense_Mutation p.V839M 0.54 tolerated(0.06) probably_damaging(0.997) TCGA-R6-A8WG-01 17 39845268 39845268 C A EIF1 5'UTR 0.05 TCGA-R6-A8WG-01 17 39845269 39845269 C G EIF1 5'UTR 0.05 TCGA-R6-A8WG-01 17 61613451 61613451 G A KCNH6 Intron 0.41 TCGA-R6-A8WG-01 17 65822444 65822444 A G BPTF Missense_Mutation p.S202G 0.09 probably_damaging(0.986) TCGA-R6-A8WG-01 17 73520544 73520544 T A TSEN54 3'UTR 0.11 TCGA-R6-A8WG-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.72 tolerated(0.13) possibly_damaging(0.631) TCGA-R6-A8WG-01 17 77086889 77086890 - T RBFOX3 3'UTR 0.33 TCGA-R6-A8WG-01 18 19449002 19449002 G A MIB1 3'UTR 0.26 TCGA-R6-A8WG-01 18 42643146 42643146 A C SETBP1 Missense_Mutation p.K1425T 0.52 deleterious(0) probably_damaging(0.996) TCGA-R6-A8WG-01 18 7012081 7012081 G A LAMA1 Silent p.R1140R 0.43 TCGA-R6-A8WG-01 18 77208834 77208834 C T NFATC1 Missense_Mutation p.T467M 0.65 deleterious(0) probably_damaging(1) TCGA-R6-A8WG-01 19 1122178 1122178 C T SBNO2 Missense_Mutation p.R370Q 0.71 tolerated(0.48) benign(0.046) TCGA-R6-A8WG-01 19 19369598 19369598 G A HAPLN4 Missense_Mutation p.A184V 0.42 tolerated(0.17) benign(0.431) TCGA-R6-A8WG-01 19 22940886 22940886 T A ZNF99 Nonsense_Mutation p.R609* 0.30 TCGA-R6-A8WG-01 19 30018199 30018199 G T VSTM2B Missense_Mutation p.G55V 0.23 deleterious(0) probably_damaging(0.984) TCGA-R6-A8WG-01 19 31039199 31039199 T G ZNF536 Silent p.P891P 0.42 TCGA-R6-A8WG-01 19 40023426 40023426 C T EID2B Missense_Mutation p.G6E 0.45 tolerated_low_confidence(0.92) benign(0.202) TCGA-R6-A8WG-01 19 4046396 4046407 CTCTCGCTCTCT - ZBTB7A 3'UTR 0.56 TCGA-R6-A8WG-01 19 50161740 50161740 C T SCAF1 3'UTR 0.59 TCGA-R6-A8WG-01 19 53912528 53912528 A T ZNF765 3'UTR 0.28 TCGA-R6-A8WG-01 19 6916316 6916316 T G EMR1 Missense_Mutation p.L453V 0.51 deleterious(0) possibly_damaging(0.899) TCGA-R6-A8WG-01 1 103496728 103496728 C T COL11A1 Missense_Mutation p.D242N 0.25 probably_damaging(1) TCGA-R6-A8WG-01 1 152785434 152785434 T G LCE1B 3'UTR 0.52 TCGA-R6-A8WG-01 1 155921991 155921991 C T ARHGEF2 Missense_Mutation p.V674M 0.10 tolerated(0.26) benign(0.004) TCGA-R6-A8WG-01 1 207112692 207112692 A G PIGR Missense_Mutation p.Y54H 0.19 deleterious(0) probably_damaging(0.999) TCGA-R6-A8WG-01 1 207200944 207200944 C T C1orf116 5'UTR 0.51 TCGA-R6-A8WG-01 1 228481160 228481160 G C OBSCN Missense_Mutation p.W4087C 0.16 benign(0.341) TCGA-R6-A8WG-01 1 236849947 236849947 C T ACTN2 5'UTR 0.60 TCGA-R6-A8WG-01 1 240978038 240978038 T C RGS7 Missense_Mutation p.K275E 0.20 deleterious(0) probably_damaging(0.986) TCGA-R6-A8WG-01 1 248128938 248128938 C T OR2AK2 Missense_Mutation p.S102L 0.48 tolerated(0.41) benign(0.245) TCGA-R6-A8WG-01 1 25599030 25599030 G A RHD 5'UTR 0.52 TCGA-R6-A8WG-01 1 27683558 27683558 G A MAP3K6 Silent p.F1102F 0.22 TCGA-R6-A8WG-01 1 67147757 67147757 A G SGIP1 Silent p.P340P 0.42 TCGA-R6-A8WG-01 1 82447530 82447530 T G LPHN2 Missense_Mutation p.L1034R 0.50 deleterious(0) probably_damaging(1) TCGA-R6-A8WG-01 20 20351198 20351198 G T INSM1 3'UTR 0.68 TCGA-R6-A8WG-01 20 44681762 44681762 C G SLC12A5 Missense_Mutation p.H871Q 0.33 deleterious(0.01) possibly_damaging(0.594) TCGA-R6-A8WG-01 21 11038758 11038758 T G BAGE2 RNA 0.13 TCGA-R6-A8WG-01 21 39580612 39580612 C T DSCR10 RNA 0.31 TCGA-R6-A8WG-01 21 43327127 43327127 A C C2CD2 Missense_Mutation p.V431G 0.50 deleterious(0.04) benign(0.055) TCGA-R6-A8WG-01 21 43892926 43892926 T A RSPH1 3'UTR 0.42 TCGA-R6-A8WG-01 22 21044536 21044536 G A POM121L4P RNA 0.34 TCGA-R6-A8WG-01 22 44112835 44112835 G A EFCAB6 Nonsense_Mutation p.Q259* 0.20 TCGA-R6-A8WG-01 2 107459975 107459975 G T ST6GAL2 Silent p.P153P 0.46 TCGA-R6-A8WG-01 2 113033502 113033502 T G ZC3H6 5'UTR 0.23 TCGA-R6-A8WG-01 2 122206680 122206680 G A CLASP1 Missense_Mutation p.H514Y 0.07 tolerated(0.07) probably_damaging(0.98) TCGA-R6-A8WG-01 2 141291618 141291618 T C LRP1B Silent p.G2578G 0.15 TCGA-R6-A8WG-01 2 141665526 141665526 G T LRP1B Missense_Mutation p.T1147N 0.32 possibly_damaging(0.775) TCGA-R6-A8WG-01 2 153520410 153520412 TCT - PRPF40A In_Frame_Del p.K650del 0.34 TCGA-R6-A8WG-01 2 166901723 166901723 T C SCN1A Missense_Mutation p.R498G 0.41 deleterious(0.03) possibly_damaging(0.627) TCGA-R6-A8WG-01 2 179431188 179431188 T G TTN Missense_Mutation p.Q26557H 0.31 TCGA-R6-A8WG-01 2 183817847 183817847 G C NCKAP1 Missense_Mutation p.T795R 0.08 deleterious(0) possibly_damaging(0.802) TCGA-R6-A8WG-01 2 196788460 196788460 C A DNAH7 Missense_Mutation p.L1228F 0.26 deleterious(0) probably_damaging(1) TCGA-R6-A8WG-01 2 197703894 197703894 G C PGAP1 3'UTR 0.19 TCGA-R6-A8WG-01 2 21230107 21230108 - T APOB Frame_Shift_Ins p.N3211Kfs*14 0.27 TCGA-R6-A8WG-01 2 220089402 220089402 G A ATG9A Missense_Mutation p.R231C 0.23 deleterious(0) probably_damaging(0.97) TCGA-R6-A8WG-01 2 220435003 220435003 C T OBSL1 Missense_Mutation p.V318I 0.29 tolerated(0.06) possibly_damaging(0.635) TCGA-R6-A8WG-01 2 24092543 24092543 C T ATAD2B Missense_Mutation p.A356T 0.47 deleterious(0.05) probably_damaging(0.974) TCGA-R6-A8WG-01 2 25384468 25384468 C T POMC Missense_Mutation p.G96S 0.47 tolerated(0.43) benign(0.002) TCGA-R6-A8WG-01 2 74755953 74755953 C G AUP1 Missense_Mutation p.R150T 0.32 tolerated(0.57) benign(0.076) TCGA-R6-A8WG-01 2 76975689 76975689 C T LRRTM4 3'UTR 0.48 TCGA-R6-A8WG-01 3 125872176 125872177 - T ALDH1L1 Intron 0.33 TCGA-R6-A8WG-01 3 1262380 1262380 T - CNTN6 Frame_Shift_Del p.L23* 0.40 TCGA-R6-A8WG-01 3 126749109 126749109 C T PLXNA1 Silent p.D1695D 0.26 TCGA-R6-A8WG-01 3 164730810 164730810 G T SI Missense_Mutation p.N1340K 0.28 deleterious(0) possibly_damaging(0.904) TCGA-R6-A8WG-01 3 179474859 179474859 G A USP13 Silent p.L647L 0.46 TCGA-R6-A8WG-01 3 186288677 186288677 C T DNAJB11 5'UTR 0.33 TCGA-R6-A8WG-01 3 38592968 38592968 C T SCN5A Missense_Mutation p.R1632H 0.39 deleterious(0) probably_damaging(0.999) TCGA-R6-A8WG-01 3 41266113 41266113 C T CTNNB1 Missense_Mutation p.S37F 0.12 deleterious(0) probably_damaging(0.962) TCGA-R6-A8WG-01 3 41497036 41497036 C A ULK4 Silent p.L1148L 0.22 TCGA-R6-A8WG-01 3 44636779 44636779 T G ZNF660 3'UTR 0.41 TCGA-R6-A8WG-01 3 46245372 46245372 G A CCR1 Missense_Mutation p.R145W 0.38 deleterious(0.02) possibly_damaging(0.529) TCGA-R6-A8WG-01 3 48461561 48461561 C G PLXNB1 Missense_Mutation p.E712Q 0.09 tolerated(0.31) benign(0.093) TCGA-R6-A8WG-01 3 49008111 49008111 G A ARIH2 Silent p.Q248Q 0.21 TCGA-R6-A8WG-01 3 49717029 49717029 C G APEH Missense_Mutation p.L388V 0.23 tolerated(0.36) benign(0.13) TCGA-R6-A8WG-01 3 98073607 98073607 A T OR5K4 Missense_Mutation p.N304Y 0.45 deleterious(0) benign(0.009) TCGA-R6-A8WG-01 4 47514680 47514680 T C ATP10D Silent p.S41S 0.49 TCGA-R6-A8WG-01 4 5624539 5624539 C T EVC2 Silent p.S742S 0.58 TCGA-R6-A8WG-01 5 129015552 129015552 A C ADAMTS19 Silent p.R862R 0.49 TCGA-R6-A8WG-01 5 132215963 132215965 CTT - AFF4 3'UTR 0.27 TCGA-R6-A8WG-01 5 145641103 145641103 C A RBM27 Missense_Mutation p.L642I 0.20 deleterious(0) probably_damaging(0.999) TCGA-R6-A8WG-01 5 150080556 150080556 C A RBM22 5'UTR 0.39 TCGA-R6-A8WG-01 5 156899589 156899589 T G NIPAL4 Missense_Mutation p.V341G 0.31 deleterious(0) probably_damaging(0.998) TCGA-R6-A8WG-01 5 180276223 180276223 C T ZFP62 Missense_Mutation p.V758M 0.32 deleterious(0.02) possibly_damaging(0.584) TCGA-R6-A8WG-01 5 32108468 32108468 G A PDZD2 3'UTR 0.38 TCGA-R6-A8WG-01 5 43291241 43291241 C T HMGCS1 Missense_Mutation p.E519K 0.40 deleterious_low_confidence(0.03) benign(0.022) TCGA-R6-A8WG-01 5 54460059 54460059 G A GPX8 3'UTR 0.29 TCGA-R6-A8WG-01 5 6449066 6449066 G A UBE2QL1 Silent p.V20V 0.36 TCGA-R6-A8WG-01 5 881271 881271 G A BRD9 Silent p.D331D 0.44 TCGA-R6-A8WG-01 6 121642778 121642778 C T TBC1D32 Splice_Site p.X106_splice 0.74 TCGA-R6-A8WG-01 6 138607990 138607990 C T KIAA1244 Missense_Mutation p.R908W 0.71 deleterious(0) probably_damaging(0.924) TCGA-R6-A8WG-01 6 146756889 146756889 C T GRM1 3'UTR 0.78 TCGA-R6-A8WG-01 6 27839778 27839778 C G HIST1H3I Missense_Mutation p.E106Q 0.05 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-R6-A8WG-01 6 43172752 43172752 G A CUL9 Missense_Mutation p.A1511T 0.72 deleterious(0) benign(0.042) TCGA-R6-A8WG-01 6 43273755 43273755 T C CRIP3 Intron 0.79 TCGA-R6-A8WG-01 6 73108016 73108016 A C RIMS1 Missense_Mutation p.S1562R 0.52 deleterious(0) possibly_damaging(0.896) TCGA-R6-A8WG-01 6 88120319 88120319 T G C6ORF165 Missense_Mutation p.L42R 0.58 deleterious(0) probably_damaging(0.994) TCGA-R6-A8WG-01 7 148802201 148802201 G A ZNF425 Silent p.S254S 0.48 TCGA-R6-A8WG-01 7 150094126 150094126 C T ZNF775 Missense_Mutation p.S186F 0.42 deleterious(0) benign(0.386) TCGA-R6-A8WG-01 7 2622228 2622228 G C IQCE Silent p.L215L 0.29 TCGA-R6-A8WG-01 7 4874715 4874715 C A RADIL Silent p.G313G 0.23 TCGA-R6-A8WG-01 7 53103888 53103888 G A POM121L12 Missense_Mutation p.R175Q 0.49 deleterious(0.02) benign(0.006) TCGA-R6-A8WG-01 7 57193732 57193732 T G ZNF479 Missense_Mutation p.K85N 0.29 tolerated(0.05) probably_damaging(0.994) TCGA-R6-A8WG-01 7 6369674 6369674 G A FAM220A 3'UTR 0.42 TCGA-R6-A8WG-01 7 82544889 82544889 C A PCLO Missense_Mutation p.S4138I 0.30 unknown(0) TCGA-R6-A8WG-01 7 87092124 87092124 C T ABCB4 Missense_Mutation p.G79E 0.30 deleterious(0) probably_damaging(0.999) TCGA-R6-A8WG-01 7 94540222 94540222 T G PPP1R9A Missense_Mutation p.V266G 0.18 tolerated(0.38) benign(0.003) TCGA-R6-A8WG-01 8 110453578 110453578 T C PKHD1L1 Missense_Mutation p.F1392L 0.18 tolerated(0.17) possibly_damaging(0.625) TCGA-R6-A8WG-01 8 113236614 113236614 A C CSMD3 3'UTR 0.45 TCGA-R6-A8WG-01 8 32505698 32505698 A C NRG1 Intron 0.36 TCGA-R6-A8WG-01 8 41788248 41788248 T A KAT6A 3'UTR 0.44 TCGA-R6-A8WG-01 8 95879377 95879377 G A INTS8 Missense_Mutation p.V769I 0.20 deleterious(0.03) probably_damaging(0.993) TCGA-R6-A8WG-01 9 135102326 135102326 C T NTNG2 Silent p.C316C 0.65 TCGA-R6-A8WG-01 9 17787381 17787381 C T SH3GL2 Missense_Mutation p.P112L 0.07 tolerated(0.33) benign(0.005) TCGA-R6-A8WG-01 X 100503183 100503183 C A DRP2 Missense_Mutation p.A453D 0.93 deleterious(0) possibly_damaging(0.661) TCGA-R6-A8WG-01 X 108787717 108787717 G C NXT2 3'UTR 0.08 TCGA-R6-A8WG-01 X 140984507 140984507 G T MAGEC3 Intron 0.92 TCGA-R6-A8WG-01 X 144907229 144907229 A G SLITRK2 3'UTR 0.86 TCGA-R6-A8WG-01 X 152914771 152914771 T G DUSP9 Missense_Mutation p.V153G 0.81 tolerated(0.49) benign(0.001) TCGA-R6-A8WG-01 X 24024586 24024586 T C KLHL15 Silent p.K75K 0.09 TCGA-R6-A8WG-01 X 3021930 3021930 C T ARSF Silent p.V410V 0.75 TCGA-R6-A8WG-01 X 49050791 49050791 G A SYP Silent p.P85P 0.75 TCGA-R6-A8WG-01 X 5810804 5810804 T C NLGN4X 3'UTR 0.74 TCGA-R6-A8WG-01 X 78012232 78012232 A C LPAR4 3'UTR 0.84 TCGA-RE-A7BO-01 10 100185457 100185457 G C HPS1 Silent p.A392A 0.17 TCGA-RE-A7BO-01 10 106960984 106960984 G T SORCS3 Missense_Mutation p.C745F 0.15 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 10 107016622 107016622 T G SORCS3 Missense_Mutation p.L1128R 0.29 deleterious(0) probably_damaging(0.996) TCGA-RE-A7BO-01 10 107023168 107023168 T G SORCS3 3'UTR 0.22 TCGA-RE-A7BO-01 10 117823895 117823895 T - GFRA1 3'UTR 0.15 TCGA-RE-A7BO-01 10 125434382 125434382 C T GPR26 Silent p.A239A 0.39 TCGA-RE-A7BO-01 10 21074399 21074399 C A NEBL 3'UTR 0.31 TCGA-RE-A7BO-01 10 44868619 44868619 A C CXCL12 3'Flank 0.39 TCGA-RE-A7BO-01 10 54048563 54048563 A C PRKG1 Missense_Mutation p.K596T 0.18 deleterious(0) possibly_damaging(0.454) TCGA-RE-A7BO-01 10 55892660 55892660 A C PCDH15 Missense_Mutation p.V631G 0.31 deleterious(0) benign(0.266) TCGA-RE-A7BO-01 10 6262656 6262656 G A PFKFB3 Missense_Mutation p.R220Q 0.42 benign(0.011) TCGA-RE-A7BO-01 10 69366709 69366709 A C CTNNA3 Silent p.T66T 0.16 TCGA-RE-A7BO-01 10 70333166 70333166 A C TET1 Missense_Mutation p.E357D 0.36 tolerated(0.1) benign(0.01) TCGA-RE-A7BO-01 10 73993322 73993322 T C ANAPC16 3'UTR 0.21 TCGA-RE-A7BO-01 10 91405118 91405118 C T PANK1 5'UTR 0.12 TCGA-RE-A7BO-01 11 102479749 102479749 T C MMP20 Missense_Mutation p.M244V 0.31 deleterious(0) probably_damaging(1) TCGA-RE-A7BO-01 11 105623793 105623793 G A GRIA4 Missense_Mutation p.A112T 0.52 tolerated(1) benign(0.276) TCGA-RE-A7BO-01 11 10650359 10650359 G T MRVI1 Silent p.L197L 0.30 TCGA-RE-A7BO-01 11 109295971 109295971 G A C11orf87 3'UTR 0.31 TCGA-RE-A7BO-01 11 110450894 110450894 T G ARHGAP20 Silent p.R926R 0.13 TCGA-RE-A7BO-01 11 118454686 118454686 A G ARCN1 Missense_Mutation p.I204V 0.25 tolerated(0.37) benign(0.003) TCGA-RE-A7BO-01 11 128356014 128356014 C G ETS1 Missense_Mutation p.G188A 0.10 tolerated(0.21) benign(0.444) TCGA-RE-A7BO-01 11 18955913 18955913 G A MRGPRX1 Missense_Mutation p.A140V 0.48 tolerated(0.22) benign(0.178) TCGA-RE-A7BO-01 11 26582088 26582088 G T MUC15 3'UTR 0.24 TCGA-RE-A7BO-01 11 26584732 26584732 A C MUC15 Missense_Mutation p.L286V 0.37 tolerated(0.13) benign(0.004) TCGA-RE-A7BO-01 11 35314032 35314032 C G SLC1A2 Missense_Mutation p.G298A 0.08 tolerated(0.07) probably_damaging(0.979) TCGA-RE-A7BO-01 11 40136894 40136894 T G LRRC4C Missense_Mutation p.K317Q 0.10 tolerated(0.07) benign(0.01) TCGA-RE-A7BO-01 11 51411715 51411715 C A OR4A5 Missense_Mutation p.Q227H 0.23 tolerated_low_confidence(0.06) benign(0.114) TCGA-RE-A7BO-01 11 5290789 5290789 A C HBE1 Silent p.T70T 0.35 TCGA-RE-A7BO-01 11 5344869 5344869 A G OR51B2 Missense_Mutation p.L220P 0.16 deleterious(0) possibly_damaging(0.451) TCGA-RE-A7BO-01 11 55322517 55322517 T C OR4C15 Silent p.T245T 0.15 TCGA-RE-A7BO-01 11 55340227 55340227 T G OR4C16 Missense_Mutation p.S208R 0.15 deleterious(0.01) probably_damaging(0.962) TCGA-RE-A7BO-01 11 55371675 55371675 A C OR4C11 Missense_Mutation p.F59V 0.35 deleterious(0.01) possibly_damaging(0.481) TCGA-RE-A7BO-01 11 55406092 55406092 A G OR4P4 Missense_Mutation p.R87G 0.28 deleterious(0.01) benign(0.005) TCGA-RE-A7BO-01 11 55587529 55587529 T A OR5D18 Missense_Mutation p.C142S 0.40 deleterious(0.02) possibly_damaging(0.512) TCGA-RE-A7BO-01 11 55594875 55594875 T G OR5L2 Missense_Mutation p.F61V 0.04 deleterious(0.01) probably_damaging(0.997) TCGA-RE-A7BO-01 11 55606285 55606285 T G OR5D16 Missense_Mutation p.S20A 0.42 deleterious(0.02) possibly_damaging(0.624) TCGA-RE-A7BO-01 11 5717484 5717484 G A TRIM22 Missense_Mutation p.D8N 0.39 tolerated(1) benign(0.003) TCGA-RE-A7BO-01 11 63594542 63594542 C G C11orf84 Missense_Mutation p.D359E 0.15 deleterious_low_confidence(0.02) benign(0.004) TCGA-RE-A7BO-01 11 7111080 7111080 C T RBMXL2 Silent p.Y243Y 0.34 TCGA-RE-A7BO-01 11 73575471 73575471 C T MRPL48 3'UTR 0.33 TCGA-RE-A7BO-01 11 76874015 76874015 C T MYO7A Silent p.I557I 0.42 TCGA-RE-A7BO-01 11 77920009 77920009 G A USP35 Missense_Mutation p.R531Q 0.18 deleterious(0) unknown(0) TCGA-RE-A7BO-01 11 83544658 83544658 G A DLG2 Missense_Mutation p.S574L 0.40 deleterious(0) probably_damaging(0.991) TCGA-RE-A7BO-01 11 88337964 88337964 T C GRM5 Missense_Mutation p.E439G 0.10 deleterious(0.01) benign(0.403) TCGA-RE-A7BO-01 11 92534123 92534123 C T FAT3 Silent p.A2648A 0.24 TCGA-RE-A7BO-01 11 94113933 94113933 G A GPR83 Silent p.D218D 0.25 TCGA-RE-A7BO-01 12 10149567 10149567 A G CLEC1B Missense_Mutation p.W106R 0.35 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 12 104492154 104492154 A T HCFC2 Nonsense_Mutation p.K592* 0.36 TCGA-RE-A7BO-01 12 10772778 10772778 C T STYK1 Missense_Mutation p.V412M 0.30 tolerated(0.07) benign(0.049) TCGA-RE-A7BO-01 12 109536098 109536098 T A UNG Intron 0.17 TCGA-RE-A7BO-01 12 11214770 11214770 A T TAS2R46 Missense_Mutation p.S42T 0.13 tolerated(0.05) probably_damaging(0.951) TCGA-RE-A7BO-01 12 116421996 116421996 C T MED13L Missense_Mutation p.R1507H 0.19 deleterious(0) unknown(0) TCGA-RE-A7BO-01 12 12247487 12247487 C G BCL2L14 Intron 0.43 TCGA-RE-A7BO-01 12 130833852 130833852 A G PIWIL1 Missense_Mutation p.D268G 0.19 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 12 132406305 132406305 C A ULK1 3'UTR 0.19 TCGA-RE-A7BO-01 12 133067335 133067335 C T FBRSL1 Missense_Mutation p.A60V 0.56 tolerated(0.22) unknown(0) TCGA-RE-A7BO-01 12 133417504 133417504 C A CHFR 3'Flank 0.24 TCGA-RE-A7BO-01 12 2659137 2659137 C T CACNA1C Silent p.S473S 0.21 TCGA-RE-A7BO-01 12 3742855 3742855 G A EFCAB4B Silent p.F550F 0.37 TCGA-RE-A7BO-01 12 39734142 39734142 T G KIF21A Missense_Mutation p.E712A 0.33 deleterious(0) possibly_damaging(0.63) TCGA-RE-A7BO-01 12 40925448 40925448 A C MUC19 Intron 0.43 TCGA-RE-A7BO-01 12 40925451 40925451 T C MUC19 Intron 0.46 TCGA-RE-A7BO-01 12 52841342 52841342 G A KRT6B Silent p.G480G 0.19 TCGA-RE-A7BO-01 12 59272738 59272738 G A LRIG3 Missense_Mutation p.R651C 0.11 deleterious(0) probably_damaging(1) TCGA-RE-A7BO-01 12 6559822 6559822 G A CD27 Intron 0.19 TCGA-RE-A7BO-01 12 72956794 72956794 T C TRHDE Silent p.T627T 0.41 TCGA-RE-A7BO-01 12 80663922 80663922 A C OTOGL Missense_Mutation p.T827P 0.14 tolerated(0.54) benign(0.009) TCGA-RE-A7BO-01 12 85674059 85674059 A G ALX1 Missense_Mutation p.K7R 0.21 deleterious_low_confidence(0.01) probably_damaging(0.985) TCGA-RE-A7BO-01 12 85677570 85677570 A T ALX1 Missense_Mutation p.K149N 0.30 deleterious(0) probably_damaging(0.945) TCGA-RE-A7BO-01 13 29600077 29600077 T G MTUS2 Missense_Mutation p.I424M 0.30 tolerated(0.39) benign(0.005) TCGA-RE-A7BO-01 13 36801320 36801320 T C CCDC169 3'UTR 0.12 TCGA-RE-A7BO-01 13 36900758 36900758 T G SPG20 Missense_Mutation p.K414N 0.13 deleterious(0.03) benign(0.052) TCGA-RE-A7BO-01 13 43182136 43182136 A T TNFSF11 3'UTR 0.14 TCGA-RE-A7BO-01 13 50502175 50502175 C G SPRYD7 Missense_Mutation p.Q90H 0.22 tolerated(0.07) possibly_damaging(0.747) TCGA-RE-A7BO-01 13 66878787 66878787 T G PCDH9 Nonstop_Mutation p.*1238Yext*26 0.31 TCGA-RE-A7BO-01 13 79175034 79175034 G A POU4F1 3'UTR 0.23 TCGA-RE-A7BO-01 13 88330307 88330307 T G SLITRK5 Silent p.T888T 0.17 TCGA-RE-A7BO-01 13 95229644 95229644 C T TGDS Missense_Mutation p.V289I 0.20 tolerated(1) benign(0.002) TCGA-RE-A7BO-01 14 104641967 104641967 C A KIF26A Missense_Mutation p.L948M 0.76 tolerated(0.06) probably_damaging(0.997) TCGA-RE-A7BO-01 14 29261472 29261472 A G C14orf23 3'UTR 0.38 TCGA-RE-A7BO-01 14 51721311 51721311 T C TMX1 3'UTR 0.06 TCGA-RE-A7BO-01 14 60193978 60193978 G A RTN1 Missense_Mutation p.S475L 0.70 deleterious(0) probably_damaging(1) TCGA-RE-A7BO-01 15 22368647 22368647 A C OR4M2 Missense_Mutation p.Q24H 0.06 deleterious(0.01) probably_damaging(0.995) TCGA-RE-A7BO-01 15 22946996 22946996 C T CYFIP1 Silent p.Y423Y 0.32 TCGA-RE-A7BO-01 15 24928187 24928187 A G NPAP1 3'UTR 0.19 TCGA-RE-A7BO-01 15 25219561 25219561 A C SNRPN 5'UTR 0.32 TCGA-RE-A7BO-01 15 25277567 25277567 T A PWAR6 RNA 0.27 TCGA-RE-A7BO-01 15 31339406 31339406 C T TRPM1 Missense_Mutation p.V575M 0.29 deleterious(0) possibly_damaging(0.848) TCGA-RE-A7BO-01 15 34080575 34080575 T G RYR3 Missense_Mutation p.L3249R 0.19 probably_damaging(0.999) TCGA-RE-A7BO-01 15 54306737 54306737 T G UNC13C Missense_Mutation p.L546R 0.30 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-RE-A7BO-01 15 79749614 79749614 A C KIAA1024 Missense_Mutation p.E375D 0.19 deleterious(0.03) probably_damaging(0.96) TCGA-RE-A7BO-01 15 93015606 93015606 A G C15orf32 Silent p.Q76Q 0.25 TCGA-RE-A7BO-01 16 19640046 19640046 A G C16orf62 Missense_Mutation p.K580E 0.24 tolerated(0.08) benign(0.28) TCGA-RE-A7BO-01 16 2152435 2152435 C T PKD1 Missense_Mutation p.A3050T 0.33 possibly_damaging(0.783) TCGA-RE-A7BO-01 16 23847616 23847616 C T PRKCB Silent p.T40T 0.12 TCGA-RE-A7BO-01 16 27495595 27495595 G A GTF3C1 Missense_Mutation p.S1313F 0.29 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 16 28620135 28620135 G A SULT1A1 Silent p.Y14Y 0.16 TCGA-RE-A7BO-01 16 49407922 49407922 A G C16orf78 Silent p.E24E 0.28 TCGA-RE-A7BO-01 16 50744810 50744810 C A NOD2 Missense_Mutation p.P330T 0.42 tolerated(0.11) probably_damaging(0.99) TCGA-RE-A7BO-01 16 50744811 50744811 C T NOD2 Missense_Mutation p.P330L 0.42 tolerated(0.09) probably_damaging(0.996) TCGA-RE-A7BO-01 16 82660582 82660582 A C CDH13 5'UTR 0.21 TCGA-RE-A7BO-01 16 84353120 84353120 G A WFDC1 Missense_Mutation p.D169N 0.20 tolerated(0.52) probably_damaging(0.996) TCGA-RE-A7BO-01 16 88498472 88498472 C T ZNF469 Missense_Mutation p.R1504W 0.23 benign(0.075) TCGA-RE-A7BO-01 16 89357110 89357110 G T ANKRD11 Missense_Mutation p.A175D 0.13 probably_damaging(0.998) TCGA-RE-A7BO-01 17 26911420 26911420 G A SPAG5 Missense_Mutation p.A747V 0.23 tolerated(0.39) benign(0.153) TCGA-RE-A7BO-01 17 3436156 3436156 G A TRPV3 Missense_Mutation p.T287M 0.48 deleterious(0) possibly_damaging(0.632) TCGA-RE-A7BO-01 17 3716411 3716411 C T C17orf85 Missense_Mutation p.R597Q 0.49 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-RE-A7BO-01 17 56661931 56661931 T G TEX14 Missense_Mutation p.E1040A 0.09 deleterious(0) benign(0.05) TCGA-RE-A7BO-01 17 62034844 62034844 G A SCN4A Missense_Mutation p.T685M 0.34 deleterious(0) probably_damaging(0.998) TCGA-RE-A7BO-01 17 6502559 6502559 C G KIAA0753 Missense_Mutation p.E724Q 0.26 tolerated(0.32) benign(0.003) TCGA-RE-A7BO-01 17 66913555 66913555 G A ABCA8 Silent p.C655C 0.12 TCGA-RE-A7BO-01 17 72700795 72700795 G A CD300LF Silent p.T68T 0.42 TCGA-RE-A7BO-01 17 73625473 73625473 C T RECQL5 Missense_Mutation p.R677Q 0.62 tolerated(0.79) benign(0.003) TCGA-RE-A7BO-01 17 78341825 78341825 G A RNF213 Missense_Mutation p.D4013N 0.17 probably_damaging(0.976) TCGA-RE-A7BO-01 18 14179564 14179564 C T ANKRD20A5P RNA 0.31 TCGA-RE-A7BO-01 18 14757822 14757822 T G ANKRD30B Missense_Mutation p.L209R 0.30 deleterious(0.02) probably_damaging(0.999) TCGA-RE-A7BO-01 18 22806995 22806995 A G ZNF521 Missense_Mutation p.L296P 0.40 deleterious(0) probably_damaging(1) TCGA-RE-A7BO-01 18 31432706 31432706 A G NOL4 3'UTR 0.75 TCGA-RE-A7BO-01 18 31801983 31801983 C G NOL4 Intron 0.53 TCGA-RE-A7BO-01 18 42281579 42281579 G C SETBP1 Missense_Mutation p.E90Q 0.21 tolerated(0.28) probably_damaging(0.994) TCGA-RE-A7BO-01 18 47788534 47788534 C T CCDC11 Missense_Mutation p.R42H 0.24 tolerated(0.33) benign(0.004) TCGA-RE-A7BO-01 18 60562282 60562282 A G PHLPP1 Missense_Mutation p.H702R 0.28 tolerated(0.65) benign(0.02) TCGA-RE-A7BO-01 19 10197926 10197926 G - C19orf66 Splice_Site p.X50_splice 0.19 TCGA-RE-A7BO-01 19 12780533 12780533 A T WDR83 Intron 0.35 TCGA-RE-A7BO-01 19 15288458 15288458 T G NOTCH3 Missense_Mutation p.Q1427H 0.15 deleterious(0.02) benign(0.043) TCGA-RE-A7BO-01 19 20188888 20188888 G A ZNF90 5'UTR 0.18 TCGA-RE-A7BO-01 19 20278155 20278155 A G ZNF486 Missense_Mutation p.R6G 0.39 tolerated_low_confidence(1) benign(0) TCGA-RE-A7BO-01 19 20308122 20308122 A C ZNF486 Missense_Mutation p.K201N 0.26 deleterious(0.02) probably_damaging(0.997) TCGA-RE-A7BO-01 19 20727762 20727762 T G ZNF737 Missense_Mutation p.K416T 0.18 deleterious(0.02) unknown(0) TCGA-RE-A7BO-01 19 22155029 22155029 T A ZNF208 Missense_Mutation p.K936M 0.12 tolerated(0.06) unknown(0) TCGA-RE-A7BO-01 19 22156121 22156121 T G ZNF208 Missense_Mutation p.K572T 0.41 deleterious(0.01) probably_damaging(0.96) TCGA-RE-A7BO-01 19 22575670 22575670 T C ZNF98 Missense_Mutation p.R123G 0.12 deleterious(0.04) benign(0) TCGA-RE-A7BO-01 19 33246913 33246913 G C TDRD12 Missense_Mutation p.D200H 0.07 deleterious(0) possibly_damaging(0.907) TCGA-RE-A7BO-01 19 37677166 37677166 A C ZNF585B Missense_Mutation p.L425V 0.22 deleterious(0.02) possibly_damaging(0.621) TCGA-RE-A7BO-01 19 46317874 46317874 G T RSPH6A Silent p.A187A 0.15 TCGA-RE-A7BO-01 19 47137887 47137887 A T GNG8 Missense_Mutation p.L18Q 0.18 deleterious(0) probably_damaging(0.998) TCGA-RE-A7BO-01 19 48886267 48886267 G A KDELR1 3'UTR 0.47 TCGA-RE-A7BO-01 19 52217193 52217193 G A HAS1 Silent p.S408S 0.10 TCGA-RE-A7BO-01 19 52887527 52887527 A C ZNF880 Silent p.R232R 0.55 TCGA-RE-A7BO-01 19 53015052 53015052 A C ZNF578 Missense_Mutation p.H473P 0.27 deleterious(0) probably_damaging(0.997) TCGA-RE-A7BO-01 19 56089012 56089012 C T ZNF579 3'UTR 0.51 TCGA-RE-A7BO-01 19 57323969 57323969 T G PEG3 3'UTR 0.53 TCGA-RE-A7BO-01 19 9066060 9066060 A C MUC16 Missense_Mutation p.L7129R 0.14 unknown(0) TCGA-RE-A7BO-01 19 9068876 9068876 A C MUC16 Missense_Mutation p.D6190E 0.15 unknown(0) TCGA-RE-A7BO-01 19 9070065 9070065 T G MUC16 Missense_Mutation p.N5794T 0.54 unknown(0) TCGA-RE-A7BO-01 19 9072974 9072974 C T MUC16 Silent p.T4824T 0.20 TCGA-RE-A7BO-01 1 11732055 11732055 C T FBXO6 Missense_Mutation p.R162W 0.05 deleterious(0) probably_damaging(0.987) TCGA-RE-A7BO-01 1 120165646 120165646 G A ZNF697 Silent p.R440R 0.36 TCGA-RE-A7BO-01 1 13839792 13839792 C T LRRC38 Silent p.T99T 0.57 TCGA-RE-A7BO-01 1 152281755 152281755 A G FLG Silent p.R1869R 0.36 TCGA-RE-A7BO-01 1 152285878 152285878 G A FLG Missense_Mutation p.S495L 0.19 probably_damaging(0.992) TCGA-RE-A7BO-01 1 152324362 152324362 A G FLG2 Missense_Mutation p.V1967A 0.15 benign(0.11) TCGA-RE-A7BO-01 1 170705262 170705262 G C PRRX1 Missense_Mutation p.A225P 0.15 deleterious(0) probably_damaging(0.995) TCGA-RE-A7BO-01 1 185987469 185987469 G T HMCN1 Nonsense_Mutation p.E1819* 0.33 TCGA-RE-A7BO-01 1 197125248 197125248 A C ZBTB41 3'UTR 0.12 TCGA-RE-A7BO-01 1 197390573 197390573 A C CRB1 Missense_Mutation p.S539R 0.20 tolerated(0.07) benign(0.022) TCGA-RE-A7BO-01 1 203134225 203134226 TG C ADORA1 Intron 0.21 TCGA-RE-A7BO-01 1 208391187 208391187 C T PLXNA2 Silent p.L27L 0.46 TCGA-RE-A7BO-01 1 222843563 222843563 A G AIDA Missense_Mutation p.Y246H 0.40 deleterious(0.04) probably_damaging(0.967) TCGA-RE-A7BO-01 1 2238803 2238803 T G SKI 3'UTR 0.71 TCGA-RE-A7BO-01 1 225576094 225576094 G C DNAH14 Missense_Mutation p.R3254T 0.21 tolerated(0.1) benign(0.018) TCGA-RE-A7BO-01 1 234458986 234458986 C T SLC35F3 Silent p.R490R 0.28 TCGA-RE-A7BO-01 1 240071039 240071039 C G CHRM3 Missense_Mutation p.N96K 0.21 deleterious(0) probably_damaging(0.991) TCGA-RE-A7BO-01 1 243675723 243675756 TACAAGCTGTAAAAAGAAAGAAAAAGAGTTTTAT - AKT3 Splice_Site p.X418_splice 0.35 TCGA-RE-A7BO-01 1 248039702 248039702 T G TRIM58 Missense_Mutation p.L458V 0.38 deleterious(0.05) possibly_damaging(0.759) TCGA-RE-A7BO-01 1 248402855 248402855 T C OR2M4 Missense_Mutation p.F209L 0.37 tolerated(0.74) benign(0.075) TCGA-RE-A7BO-01 1 248652080 248652080 A T OR2T5 Missense_Mutation p.Y64F 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-RE-A7BO-01 1 27089531 27089532 - G ARID1A Frame_Shift_Ins p.G831Rfs*41 0.34 TCGA-RE-A7BO-01 1 28833912 28833942 GGGCTCTGTCCAAGTGGCGTAGGGGAGCATA - SNORA73B 5'Flank 0.15 TCGA-RE-A7BO-01 1 47027176 47027176 C T MKNK1 Missense_Mutation p.V368I 0.21 tolerated(0.06) possibly_damaging(0.629) TCGA-RE-A7BO-01 1 75684212 75684212 G A SLC44A5 Nonsense_Mutation p.R498* 0.18 TCGA-RE-A7BO-01 20 20350577 20350577 G A INSM1 3'UTR 0.60 TCGA-RE-A7BO-01 20 21492085 21492085 T A NKX2-2 3'UTR 0.64 TCGA-RE-A7BO-01 20 33033089 33033089 T G ITCH Intron 0.14 TCGA-RE-A7BO-01 20 34242457 34242457 C T RBM12 Missense_Mutation p.G263E 0.11 deleterious(0) unknown(0) TCGA-RE-A7BO-01 20 37186956 37186956 C G RALGAPB Missense_Mutation p.L1131V 0.68 tolerated(0.55) benign(0.269) TCGA-RE-A7BO-01 20 42354942 42354942 C T GTSF1L Silent p.T131T 0.73 TCGA-RE-A7BO-01 20 57430180 57430180 C T GNAS Silent p.F620F 0.07 TCGA-RE-A7BO-01 21 30715103 30715103 G T BACH1 Silent p.G720G 0.31 TCGA-RE-A7BO-01 21 43531545 43531545 C T UMODL1 Missense_Mutation p.P738L 0.24 deleterious(0.03) possibly_damaging(0.859) TCGA-RE-A7BO-01 22 24466851 24466851 C T CABIN1 Missense_Mutation p.A778V 0.21 tolerated(0.12) benign(0.005) TCGA-RE-A7BO-01 22 26860498 26860500 TTC - HPS4 In_Frame_Del p.E366del 0.26 TCGA-RE-A7BO-01 22 33253282 33253282 C T TIMP3 Missense_Mutation p.T84M 0.25 deleterious(0) probably_damaging(1) TCGA-RE-A7BO-01 2 105859310 105859310 G A GPR45 Missense_Mutation p.R332H 0.38 tolerated(0.11) probably_damaging(0.909) TCGA-RE-A7BO-01 2 110342897 110342897 C A SEPT10 Silent p.G73G 0.18 TCGA-RE-A7BO-01 2 118572357 118572357 T C DDX18 Missense_Mutation p.S2P 0.15 deleterious_low_confidence(0.01) benign(0.432) TCGA-RE-A7BO-01 2 118578815 118578816 GT - DDX18 Frame_Shift_Del p.G198Vfs*6 0.24 TCGA-RE-A7BO-01 2 119752187 119752187 A C MARCO 3'UTR 0.20 TCGA-RE-A7BO-01 2 1371218 1371218 T C SNTG2 Missense_Mutation p.L531P 0.36 deleterious(0.03) possibly_damaging(0.646) TCGA-RE-A7BO-01 2 141739817 141739817 A T LRP1B Silent p.S933S 0.23 TCGA-RE-A7BO-01 2 1546277 1546277 T C TPO 3'UTR 0.48 TCGA-RE-A7BO-01 2 160806227 160806227 C G PLA2R1 Missense_Mutation p.E1201Q 0.32 tolerated(0.06) possibly_damaging(0.891) TCGA-RE-A7BO-01 2 1652145 1652145 T G PXDN Missense_Mutation p.N1136T 0.45 tolerated(0.08) possibly_damaging(0.741) TCGA-RE-A7BO-01 2 167085307 167085307 C A SCN9A Missense_Mutation p.R1356L 0.20 tolerated(0.06) benign(0.001) TCGA-RE-A7BO-01 2 167129052 167129052 A C SCN9A Missense_Mutation p.L1059V 0.29 tolerated(1) benign(0.003) TCGA-RE-A7BO-01 2 168115487 168115487 A C XIRP2 3'UTR 0.45 TCGA-RE-A7BO-01 2 168115550 168115550 A C XIRP2 3'UTR 0.15 TCGA-RE-A7BO-01 2 169629059 169629059 T C CERS6 3'UTR 0.41 TCGA-RE-A7BO-01 2 171716632 171716632 C A GAD1 3'UTR 0.12 TCGA-RE-A7BO-01 2 174774172 174774172 G C SP3 3'UTR 0.27 TCGA-RE-A7BO-01 2 179439329 179439329 T G TTN Missense_Mutation p.T23844P 0.34 TCGA-RE-A7BO-01 2 179442443 179442443 T G TTN Missense_Mutation p.T22904P 0.26 TCGA-RE-A7BO-01 2 179598063 179598063 T G TTN Missense_Mutation p.K5319N 0.20 TCGA-RE-A7BO-01 2 179599578 179599578 T G TTN Missense_Mutation p.S5025R 0.34 TCGA-RE-A7BO-01 2 179839848 179839848 A G CCDC141 Silent p.T154T 0.05 TCGA-RE-A7BO-01 2 219255998 219255998 C T SLC11A1 Silent p.D344D 0.37 TCGA-RE-A7BO-01 2 219563818 219563818 G C STK36 Missense_Mutation p.G1184A 0.16 tolerated(0.12) possibly_damaging(0.562) TCGA-RE-A7BO-01 2 238285729 238285729 G A COL6A3 Missense_Mutation p.A919V 0.22 probably_damaging(1) TCGA-RE-A7BO-01 2 24974952 24974952 C A NCOA1 Missense_Mutation p.Q1270K 0.19 tolerated(0.07) benign(0.022) TCGA-RE-A7BO-01 2 31560520 31560520 T G XDH Missense_Mutation p.K1313T 0.15 tolerated(0.16) benign(0.001) TCGA-RE-A7BO-01 2 32756502 32756502 G T BIRC6 Nonsense_Mutation p.E4059* 0.41 TCGA-RE-A7BO-01 2 49191063 49191063 T C FSHR Silent p.Q299Q 0.20 TCGA-RE-A7BO-01 2 55792177 55792177 C T SMEK2 Missense_Mutation p.E646K 0.21 deleterious(0) benign(0.126) TCGA-RE-A7BO-01 2 5835242 5835242 T - SOX11 3'UTR 0.12 TCGA-RE-A7BO-01 2 5835443 5835443 T C SOX11 3'UTR 0.18 TCGA-RE-A7BO-01 2 5836992 5836992 C T SOX11 3'UTR 0.16 TCGA-RE-A7BO-01 2 79384261 79384261 C T REG3A 3'UTR 0.20 TCGA-RE-A7BO-01 2 79384298 79384298 T C REG3A 3'UTR 0.19 TCGA-RE-A7BO-01 2 85780094 85780094 G A GGCX Missense_Mutation p.R419C 0.16 tolerated(0.05) possibly_damaging(0.601) TCGA-RE-A7BO-01 2 89278277 89278277 T C IGKV3-7 Missense_Mutation p.R20G 0.39 tolerated(1) benign(0) TCGA-RE-A7BO-01 2 90229402 90229402 A C IGKV1D-42 Missense_Mutation p.K74N 0.16 tolerated(0.09) benign(0.2) TCGA-RE-A7BO-01 3 110612213 110612213 G A RP11-553A10.1 5'UTR 0.28 TCGA-RE-A7BO-01 3 12225335 12225335 C T SYN2 RNA 0.26 TCGA-RE-A7BO-01 3 147105131 147105131 A G ZIC4 3'UTR 0.32 TCGA-RE-A7BO-01 3 151046374 151046374 G A P2RY13 Missense_Mutation p.P157L 0.32 tolerated(0.62) benign(0.001) TCGA-RE-A7BO-01 3 164906795 164906795 T G SLITRK3 Missense_Mutation p.E608D 0.22 tolerated(0.17) possibly_damaging(0.721) TCGA-RE-A7BO-01 3 180693971 180693971 C T FXR1 Missense_Mutation p.A586V 0.25 tolerated_low_confidence(0.09) benign(0.001) TCGA-RE-A7BO-01 3 183396909 183396909 A G KLHL24 Missense_Mutation p.I546M 0.33 deleterious(0.01) probably_damaging(0.996) TCGA-RE-A7BO-01 3 183772516 183772516 C T HTR3C Silent p.G25G 0.17 TCGA-RE-A7BO-01 3 191859784 191859784 A C FGF12 3'Flank 0.21 TCGA-RE-A7BO-01 3 26751130 26751130 A C LRRC3B 5'UTR 0.33 TCGA-RE-A7BO-01 3 2777926 2777926 T G CNTN4 Missense_Mutation p.F28C 0.20 deleterious(0) probably_damaging(1) TCGA-RE-A7BO-01 3 36779076 36779076 C A DCLK3 Missense_Mutation p.G359C 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-RE-A7BO-01 3 37792003 37792003 T C ITGA9 Silent p.S828S 0.19 TCGA-RE-A7BO-01 3 38748813 38748813 T G SCN10A Missense_Mutation p.K1448T 0.32 deleterious(0) probably_damaging(0.912) TCGA-RE-A7BO-01 3 52544253 52544253 T C STAB1 Splice_Site p.X876_splice 0.38 TCGA-RE-A7BO-01 3 55501235 55501235 T G WNT5A 3'UTR 0.14 TCGA-RE-A7BO-01 3 74414720 74414720 T C CNTN3 Silent p.L360L 0.20 TCGA-RE-A7BO-01 3 77695296 77695296 T C ROBO2 3'UTR 0.24 TCGA-RE-A7BO-01 3 86116470 86116470 A - CADM2 3'Flank 0.13 TCGA-RE-A7BO-01 4 118005646 118005646 A G TRAM1L1 Missense_Mutation p.S302P 0.64 tolerated(0.14) possibly_damaging(0.808) TCGA-RE-A7BO-01 4 155491731 155491731 A C FGB Missense_Mutation p.N469H 0.50 deleterious(0.01) possibly_damaging(0.722) TCGA-RE-A7BO-01 4 158234006 158234006 A T GRIA2 Missense_Mutation p.K215N 0.23 tolerated(0.06) benign(0.397) TCGA-RE-A7BO-01 4 177056320 177056320 C A WDR17 Missense_Mutation p.T411K 0.62 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 4 183674674 183674674 G T TENM3 Nonsense_Mutation p.G1312* 0.38 TCGA-RE-A7BO-01 4 20620748 20620748 T G SLIT2 3'UTR 0.56 TCGA-RE-A7BO-01 4 5500876 5500876 T C STK32B 3'UTR 0.50 TCGA-RE-A7BO-01 4 5758088 5758088 A G EVC Missense_Mutation p.Q521R 0.61 deleterious(0.02) probably_damaging(0.917) TCGA-RE-A7BO-01 4 5841268 5841268 A C CRMP1 Missense_Mutation p.L431V 0.51 deleterious(0) benign(0.142) TCGA-RE-A7BO-01 4 65275053 65275053 T C TECRL Missense_Mutation p.K6R 0.31 tolerated_low_confidence(0.07) benign(0.016) TCGA-RE-A7BO-01 4 81207618 81207618 G A FGF5 Missense_Mutation p.R200Q 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-RE-A7BO-01 4 96761436 96761436 A C PDHA2 Missense_Mutation p.E45D 0.45 tolerated(0.77) benign(0.001) TCGA-RE-A7BO-01 5 140188386 140188386 C T PCDHA4 Silent p.R538R 0.18 TCGA-RE-A7BO-01 5 140573676 140573676 G T PCDHB10 Missense_Mutation p.R517S 0.48 deleterious_low_confidence(0.02) possibly_damaging(0.68) TCGA-RE-A7BO-01 5 140798758 140798758 C T PCDHGB7 Silent p.D444D 0.12 TCGA-RE-A7BO-01 5 15939372 15939372 G C FBXL7 3'UTR 0.68 TCGA-RE-A7BO-01 5 21783579 21783579 A G CDH12 Silent p.D427D 0.24 TCGA-RE-A7BO-01 5 36970987 36970987 C G NIPBL Nonsense_Mutation p.S207* 0.10 TCGA-RE-A7BO-01 5 41176582 41176582 T G C6 Missense_Mutation p.N388T 0.11 tolerated(0.26) benign(0.098) TCGA-RE-A7BO-01 5 7827023 7827023 G A ADCY2 3'UTR 0.31 TCGA-RE-A7BO-01 5 93979038 93979038 T G ANKRD32 Silent p.T164T 0.15 TCGA-RE-A7BO-01 5 94024234 94024234 G A ANKRD32 Silent p.L715L 0.16 TCGA-RE-A7BO-01 6 125583983 125583983 A G TPD52L1 Missense_Mutation p.K164E 0.08 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 6 134350159 134350159 C G SLC2A12 Silent p.L268L 0.38 TCGA-RE-A7BO-01 6 152545633 152545633 A C SYNE1 Missense_Mutation p.L7173R 0.21 probably_damaging(0.998) TCGA-RE-A7BO-01 6 152552690 152552690 C G SYNE1 Missense_Mutation p.D6959H 0.18 probably_damaging(0.928) TCGA-RE-A7BO-01 6 152639329 152639329 A C SYNE1 Missense_Mutation p.L5487V 0.51 benign(0) TCGA-RE-A7BO-01 6 165715286 165715286 T C C6orf118 Silent p.E175E 0.61 TCGA-RE-A7BO-01 6 20131397 20131397 G A MBOAT1 Silent p.T151T 0.60 TCGA-RE-A7BO-01 6 57049690 57049690 A T BAG2 3'UTR 0.50 TCGA-RE-A7BO-01 6 65300632 65300632 T G EYS Missense_Mutation p.T1710P 0.70 tolerated_low_confidence(0.15) benign(0.399) TCGA-RE-A7BO-01 6 66053990 66053990 C T EYS Missense_Mutation p.V514M 0.29 deleterious(0.04) benign(0.083) TCGA-RE-A7BO-01 6 89322311 89322311 A T RNGTT 3'UTR 0.51 TCGA-RE-A7BO-01 6 96034471 96034471 T C MANEA Silent p.T52T 0.11 TCGA-RE-A7BO-01 7 104758331 104758331 C T SRPK2 Missense_Mutation p.R685Q 0.09 deleterious(0) probably_damaging(0.983) TCGA-RE-A7BO-01 7 110762847 110762847 C A LRRN3 Silent p.R7R 0.41 TCGA-RE-A7BO-01 7 119914611 119914611 A C KCND2 5'UTR 0.11 TCGA-RE-A7BO-01 7 12380034 12380034 T C VWDE Missense_Mutation p.D1427G 0.13 deleterious(0.01) possibly_damaging(0.647) TCGA-RE-A7BO-01 7 136701235 136701235 A G CHRM2 3'UTR 0.15 TCGA-RE-A7BO-01 7 137128842 137128842 T C DGKI Silent p.P922P 0.18 TCGA-RE-A7BO-01 7 143140865 143140865 C A TAS2R60 Missense_Mutation p.T107N 0.40 deleterious(0.02) probably_damaging(0.964) TCGA-RE-A7BO-01 7 143701314 143701314 T C OR6B1 Silent p.S75S 0.15 TCGA-RE-A7BO-01 7 15430475 15430475 A C AGMO Missense_Mutation p.D244E 0.17 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 7 21818598 21818598 T C DNAH11 Missense_Mutation p.L3127P 0.16 probably_damaging(1) TCGA-RE-A7BO-01 7 31592728 31592728 G A CCDC129 Silent p.A56A 0.14 TCGA-RE-A7BO-01 7 42001041 42001041 A G GLI3 3'UTR 0.57 TCGA-RE-A7BO-01 7 45144531 45144531 A C TBRG4 Intron 0.06 TCGA-RE-A7BO-01 7 63721262 63721262 G T ZNF679 Nonsense_Mutation p.E73* 0.33 TCGA-RE-A7BO-01 7 72742409 72742409 G A FKBP6 5'UTR 0.14 TCGA-RE-A7BO-01 7 88964841 88964841 A C ZNF804B Missense_Mutation p.T849P 0.18 tolerated(0.96) benign(0) TCGA-RE-A7BO-01 7 88965052 88965052 A G ZNF804B Missense_Mutation p.E919G 0.17 deleterious(0.04) possibly_damaging(0.717) TCGA-RE-A7BO-01 7 94049564 94049564 G C COL1A2 Missense_Mutation p.G700A 0.11 unknown(0) TCGA-RE-A7BO-01 8 105405184 105405184 T G DPYS Missense_Mutation p.N424T 0.13 deleterious(0) benign(0.117) TCGA-RE-A7BO-01 8 108348423 108348423 A C ANGPT1 Missense_Mutation p.L177R 0.30 deleterious(0) possibly_damaging(0.84) TCGA-RE-A7BO-01 8 109252279 109252279 C T EIF3E Silent p.V77V 0.29 TCGA-RE-A7BO-01 8 110406647 110406647 T G PKHD1L1 Missense_Mutation p.S248R 0.40 deleterious(0) probably_damaging(0.979) TCGA-RE-A7BO-01 8 11213740 11213740 G C TDH RNA 0.32 TCGA-RE-A7BO-01 8 145004619 145004619 C T PLEC Missense_Mutation p.R934H 0.10 unknown(0) TCGA-RE-A7BO-01 8 20054971 20054971 C T ATP6V1B2 Silent p.P18P 0.48 TCGA-RE-A7BO-01 8 22275169 22275169 T G SLC39A14 Missense_Mutation p.F385V 0.23 deleterious(0) probably_damaging(0.938) TCGA-RE-A7BO-01 8 28716984 28716984 G A INTS9 Missense_Mutation p.L36F 0.31 deleterious(0.05) benign(0.003) TCGA-RE-A7BO-01 8 35583736 35583736 C T UNC5D Missense_Mutation p.P457L 0.17 deleterious(0) possibly_damaging(0.835) TCGA-RE-A7BO-01 8 3565977 3565977 T G CSMD1 Missense_Mutation p.K323T 0.12 possibly_damaging(0.614) TCGA-RE-A7BO-01 8 59513816 59513816 A C NSMAF Intron 0.16 TCGA-RE-A7BO-01 8 65509363 65509363 A C CYP7B1 Missense_Mutation p.F453V 0.35 deleterious(0.01) probably_damaging(0.909) TCGA-RE-A7BO-01 8 69058490 69058490 A G PREX2 Silent p.K1378K 0.31 TCGA-RE-A7BO-01 8 74650579 74650579 C T STAU2 5'UTR 0.30 TCGA-RE-A7BO-01 8 81550832 81550833 - C ZNF704 3'UTR 0.11 TCGA-RE-A7BO-01 8 87498834 87498834 G A RMDN1 Missense_Mutation p.S125L 0.12 tolerated(0.14) benign(0.003) TCGA-RE-A7BO-01 8 92410322 92410322 T G SLC26A7 3'Flank 0.22 TCGA-RE-A7BO-01 8 94937382 94937382 T A PDP1 3'UTR 0.20 TCGA-RE-A7BO-01 9 120475898 120475898 T G TLR4 Missense_Mutation p.L498V 0.64 deleterious(0) probably_damaging(0.999) TCGA-RE-A7BO-01 9 124547390 124547390 G A DAB2IP 3'UTR 0.10 TCGA-RE-A7BO-01 9 130236144 130236144 C A LRSAM1 Silent p.I228I 0.18 TCGA-RE-A7BO-01 9 130571165 130571165 C T FPGS Missense_Mutation p.L353F 0.66 tolerated(0.69) benign(0.012) TCGA-RE-A7BO-01 9 131094519 131094519 G A COQ4 Missense_Mutation p.D164N 0.19 deleterious(0) probably_damaging(1) TCGA-RE-A7BO-01 9 140194909 140194909 A C NRARP 3'UTR 0.19 TCGA-RE-A7BO-01 9 17795760 17795760 T C SH3GL2 3'UTR 0.51 TCGA-RE-A7BO-01 9 21227538 21227538 G C IFNA17 3'UTR 0.26 TCGA-RE-A7BO-01 9 35060387 35060387 T C VCP Missense_Mutation p.I540V 0.14 tolerated(0.06) probably_damaging(0.997) TCGA-RE-A7BO-01 9 8486088 8486088 T G PTPRD Missense_Mutation p.E910A 0.18 tolerated(0.08) probably_damaging(0.952) TCGA-RE-A7BO-01 X 113818748 113818748 G A HTR2C 5'UTR 0.25 TCGA-RE-A7BO-01 X 130223045 130223045 T A ARHGAP36 3'UTR 0.24 TCGA-RE-A7BO-01 X 18668594 18668594 T C CDKL5 Silent p.L954L 0.53 TCGA-RE-A7BO-01 X 26157600 26157600 A C MAGEB18 Missense_Mutation p.E166D 0.33 deleterious(0) probably_damaging(0.997) TCGA-RE-A7BO-01 X 30236802 30236802 A C MAGEB2 Missense_Mutation p.E35D 0.45 tolerated(0.1) benign(0.004) TCGA-RE-A7BO-01 X 3241800 3241800 T G MXRA5 Missense_Mutation p.Q642H 0.30 tolerated(0.31) benign(0.208) TCGA-RE-A7BO-01 X 44910974 44910974 A C KDM6A Missense_Mutation p.K225N 0.05 deleterious(0) probably_damaging(0.998) TCGA-RE-A7BO-01 X 50213279 50213279 C T DGKK RNA 0.56 TCGA-RE-A7BO-01 X 51151007 51151007 C A CXorf67 Missense_Mutation p.A380D 0.42 deleterious(0.02) possibly_damaging(0.855) TCGA-RE-A7BO-01 X 68382727 68382727 C T PJA1 Missense_Mutation p.D119N 0.23 deleterious(0.02) possibly_damaging(0.468) TCGA-RE-A7BO-01 X 70749636 70749636 G A OGT 5'Flank 0.38 TCGA-RE-A7BO-01 X 78216928 78216928 T A P2RY10 Missense_Mutation p.L304H 0.21 deleterious(0) probably_damaging(0.995) TCGA-RE-A7BO-01 X 83599322 83599322 T C HDX Silent p.E532E 0.51 TCGA-RE-A7BO-01 X 91134101 91134101 T C PCDH11X Silent p.T954T 0.51 TCGA-RE-A7BO-01 X 92926799 92926799 T G NAP1L3 Missense_Mutation p.K502T 0.58 deleterious_low_confidence(0) benign(0.001) TCGA-S8-A6BV-01 10 408572 408572 G C DIP2C Silent p.T884T 0.31 TCGA-S8-A6BV-01 10 42832943 42832943 G T RP11-313J2.1 RNA 0.14 TCGA-S8-A6BV-01 10 50724765 50724767 TGG - ERCC6-PGBD3 In_Frame_Del p.P600del 0.20 TCGA-S8-A6BV-01 10 91343931 91343931 T A PANK1 3'UTR 0.32 TCGA-S8-A6BV-01 10 92982738 92982738 C T PCGF5 Missense_Mutation p.T37I 0.12 deleterious(0.01) benign(0.26) TCGA-S8-A6BV-01 11 118984980 118984980 G A C2CD2L Missense_Mutation p.R606H 0.21 tolerated(0.1) probably_damaging(0.988) TCGA-S8-A6BV-01 11 125616207 125616207 A C PATE1 Missense_Mutation p.K3T 0.26 tolerated(0.07) benign(0.082) TCGA-S8-A6BV-01 11 32461227 32461227 C T WT1 5'Flank 0.19 TCGA-S8-A6BV-01 11 49805527 49805527 C G RP11-707M1.1 RNA 0.22 TCGA-S8-A6BV-01 11 55541130 55541130 T G OR5D13 Missense_Mutation p.F73V 0.18 deleterious(0.03) benign(0.103) TCGA-S8-A6BV-01 11 55657514 55657514 A T TRIM51 Missense_Mutation p.R286S 0.14 tolerated(0.1) benign(0.071) TCGA-S8-A6BV-01 11 5758475 5758475 A T OR56B1 Silent p.A243A 0.13 TCGA-S8-A6BV-01 11 60689319 60689319 C G TMEM109 Silent p.A138A 0.16 TCGA-S8-A6BV-01 11 62190554 62190554 G A SCGB1A1 Silent p.L89L 0.09 TCGA-S8-A6BV-01 11 6815962 6815962 A G OR6A2 Silent p.N326N 0.17 TCGA-S8-A6BV-01 11 7111975 7111975 A G RBMXL2 3'UTR 0.10 TCGA-S8-A6BV-01 12 11546376 11546376 A G PRB2 Silent p.P212P 0.17 TCGA-S8-A6BV-01 12 118681288 118681288 A C TAOK3 Missense_Mutation p.L76V 0.18 deleterious(0) probably_damaging(0.956) TCGA-S8-A6BV-01 12 120639006 120639006 C A RPLP0 5'Flank 0.47 TCGA-S8-A6BV-01 12 129566504 129566504 C T TMEM132D Missense_Mutation p.A575T 0.14 tolerated(0.09) probably_damaging(0.953) TCGA-S8-A6BV-01 12 22797273 22797273 C A ETNK1 Intron 0.26 TCGA-S8-A6BV-01 12 311938 311938 G A SLC6A12 Missense_Mutation p.P153L 0.25 deleterious(0) probably_damaging(1) TCGA-S8-A6BV-01 12 50471054 50471054 G A ASIC1 Missense_Mutation p.R206Q 0.23 tolerated(0.33) benign(0.285) TCGA-S8-A6BV-01 12 52755284 52755284 T G KRT85 Splice_Site p.X433_splice 0.22 TCGA-S8-A6BV-01 13 112723546 112723546 G A SOX1 3'UTR 0.14 TCGA-S8-A6BV-01 13 21555733 21555733 G A LATS2 Missense_Mutation p.S846F 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-S8-A6BV-01 13 23910865 23910865 C T SACS Missense_Mutation p.E2384K 0.07 probably_damaging(0.993) TCGA-S8-A6BV-01 13 39587523 39587523 T C PROSER1 Silent p.P622P 0.16 TCGA-S8-A6BV-01 13 46708338 46708338 T C LCP1 Missense_Mutation p.N517S 0.09 tolerated(0.79) benign(0) TCGA-S8-A6BV-01 13 50206277 50206277 C T ARL11 3'UTR 0.29 TCGA-S8-A6BV-01 14 19559009 19559009 G T POTEG Missense_Mutation p.D219Y 0.12 deleterious(0) probably_damaging(0.95) TCGA-S8-A6BV-01 14 23865919 23865919 T G MYH6 Missense_Mutation p.K759T 0.22 deleterious(0.01) possibly_damaging(0.84) TCGA-S8-A6BV-01 14 74083691 74083691 C T ACOT6 5'UTR 0.18 TCGA-S8-A6BV-01 14 74535675 74535675 A C ALDH6A1 Missense_Mutation p.F247C 0.09 deleterious(0.03) possibly_damaging(0.894) TCGA-S8-A6BV-01 14 74825914 74825914 G A VRTN 3'UTR 0.27 TCGA-S8-A6BV-01 14 91774800 91774800 T C CCDC88C Silent p.A967A 0.11 TCGA-S8-A6BV-01 14 94528651 94528651 G A DDX24 Silent p.I345I 0.14 TCGA-S8-A6BV-01 14 96552938 96552938 G A C14orf132 5'UTR 0.47 TCGA-S8-A6BV-01 15 48773943 48773943 G A FBN1 Silent p.C1291C 0.19 TCGA-S8-A6BV-01 15 72968360 72968360 G A HIGD2B 3'UTR 0.33 TCGA-S8-A6BV-01 16 14972668 14972668 G A NOMO1 Missense_Mutation p.G912S 0.13 deleterious(0) probably_damaging(0.996) TCGA-S8-A6BV-01 16 1537919 1537919 T C PTX4 Missense_Mutation p.N60S 0.38 tolerated(0.13) possibly_damaging(0.621) TCGA-S8-A6BV-01 16 2024421 2024421 C T TBL3 Silent p.N78N 0.22 TCGA-S8-A6BV-01 16 24231454 24231454 T G PRKCB 3'UTR 0.18 TCGA-S8-A6BV-01 16 24373598 24373598 G A CACNG3 3'UTR 0.13 TCGA-S8-A6BV-01 16 71602142 71602142 C A TAT Nonsense_Mutation p.E424* 0.19 TCGA-S8-A6BV-01 17 10427169 10427169 C A MYH2 Silent p.L1736L 0.23 TCGA-S8-A6BV-01 17 15510949 15510949 C A RP11-385D13.1 Missense_Mutation p.V701F 0.16 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-S8-A6BV-01 17 37077538 37077538 G A LASP1 3'UTR 0.08 TCGA-S8-A6BV-01 17 59115362 59115362 C T BCAS3 Silent p.D640D 0.14 TCGA-S8-A6BV-01 17 68175629 68175629 A G KCNJ2 3'UTR 0.20 TCGA-S8-A6BV-01 17 74035522 74035522 G A SRP68 3'UTR 0.23 TCGA-S8-A6BV-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.40 deleterious(0) probably_damaging(1) TCGA-S8-A6BV-01 17 80789208 80789208 C T ZNF750 Missense_Mutation p.V375I 0.19 tolerated(0.35) benign(0.001) TCGA-S8-A6BV-01 18 22805855 22805855 T A ZNF521 Missense_Mutation p.Q676L 0.27 deleterious(0) probably_damaging(0.952) TCGA-S8-A6BV-01 18 32470180 32470180 G A DTNA Intron 0.10 TCGA-S8-A6BV-01 18 55143876 55143876 G A ONECUT2 Missense_Mutation p.R479H 0.36 deleterious(0) probably_damaging(0.999) TCGA-S8-A6BV-01 19 1073196 1073196 C G HMHA1 Missense_Mutation p.A173G 0.19 deleterious(0.04) benign(0.36) TCGA-S8-A6BV-01 19 10823277 10823277 C T QTRT1 Silent p.F278F 0.34 TCGA-S8-A6BV-01 19 17844182 17844182 G A MAP1S Missense_Mutation p.R990Q 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-S8-A6BV-01 19 19603235 19603235 C T GATAD2A Silent p.T130T 0.33 TCGA-S8-A6BV-01 19 30312917 30312917 T C CCNE1 Silent p.R240R 0.21 TCGA-S8-A6BV-01 19 32845530 32845530 A C ZNF507 Silent p.T598T 0.22 TCGA-S8-A6BV-01 19 3547313 3547313 G T MFSD12 Missense_Mutation p.S327Y 0.12 possibly_damaging(0.702) TCGA-S8-A6BV-01 19 37676372 37676372 A C ZNF585B Silent p.P689P 0.19 TCGA-S8-A6BV-01 19 38039849 38039849 G A ZNF540 5'Flank 0.09 TCGA-S8-A6BV-01 19 40022958 40022958 C G EID2B Nonstop_Mutation p.*162Sext*12 0.29 TCGA-S8-A6BV-01 19 40721128 40721128 C A MAP3K10 Missense_Mutation p.L932M 0.27 tolerated(0.06) benign(0.27) TCGA-S8-A6BV-01 19 44271780 44271780 G A KCNN4 Missense_Mutation p.A400V 0.30 deleterious(0.03) benign(0.157) TCGA-S8-A6BV-01 19 46305522 46305522 C A RSPH6A Missense_Mutation p.G552C 0.19 deleterious(0) probably_damaging(1) TCGA-S8-A6BV-01 19 52249869 52249869 C T FPR1 Missense_Mutation p.V127I 0.23 tolerated(0.05) possibly_damaging(0.858) TCGA-S8-A6BV-01 19 56466078 56466078 C A NLRP8 Silent p.I218I 0.18 TCGA-S8-A6BV-01 19 9090305 9090305 C - MUC16 Frame_Shift_Del p.D504Tfs*3 0.23 TCGA-S8-A6BV-01 1 104120136 104120136 C A AMY2B Missense_Mutation p.P376T 0.07 deleterious(0) probably_damaging(0.975) TCGA-S8-A6BV-01 1 109773544 109773544 C T SARS Silent p.V164V 0.15 TCGA-S8-A6BV-01 1 120164095 120164095 C A ZNF697 3'UTR 0.14 TCGA-S8-A6BV-01 1 12887426 12887426 T C PRAMEF11 Missense_Mutation p.K144R 0.14 tolerated(0.07) possibly_damaging(0.474) TCGA-S8-A6BV-01 1 151955497 151955497 G A S100A10 3'UTR 0.54 TCGA-S8-A6BV-01 1 152770547 152770547 A C LCE1D Missense_Mutation p.S93R 0.09 unknown(0) TCGA-S8-A6BV-01 1 152882818 152882818 A T IVL Missense_Mutation p.Q182L 0.09 tolerated(0.18) unknown(0) TCGA-S8-A6BV-01 1 158151871 158151871 C T CD1D Silent p.N126N 0.19 TCGA-S8-A6BV-01 1 158325179 158325179 A T CD1E Missense_Mutation p.S149C 0.17 deleterious(0) probably_damaging(0.926) TCGA-S8-A6BV-01 1 175299280 175299280 G A TNR Silent p.Y1241Y 0.12 TCGA-S8-A6BV-01 1 186086741 186086741 G C HMCN1 Missense_Mutation p.R3945T 0.46 probably_damaging(0.993) TCGA-S8-A6BV-01 1 186275465 186275465 A G PRG4 Missense_Mutation p.K205R 0.09 probably_damaging(0.993) TCGA-S8-A6BV-01 1 206331026 206331026 C T CTSE Silent p.F344F 0.34 TCGA-S8-A6BV-01 1 207648206 207648206 G A CR2 Silent p.G787G 0.19 TCGA-S8-A6BV-01 1 228286764 228286764 C T ARF1 3'UTR 0.07 TCGA-S8-A6BV-01 1 235972611 235972611 G A LYST Nonsense_Mutation p.R503* 0.19 TCGA-S8-A6BV-01 1 242035465 242035465 C T EXO1 Missense_Mutation p.P467S 0.18 tolerated(1) benign(0.001) TCGA-S8-A6BV-01 1 246755187 246755187 T A CNST Missense_Mutation p.I108N 0.21 tolerated(0.6) benign(0.052) TCGA-S8-A6BV-01 1 248202030 248202030 A C OR2L2 Missense_Mutation p.N154T 0.07 deleterious(0.03) possibly_damaging(0.831) TCGA-S8-A6BV-01 1 32681521 32681521 A C DCDC2B 3'UTR 0.15 TCGA-S8-A6BV-01 1 34042918 34042918 G A CSMD2 Silent p.S2520S 0.29 TCGA-S8-A6BV-01 1 47280896 47280896 G T CYP4B1 Nonsense_Mutation p.E345* 0.12 TCGA-S8-A6BV-01 1 76877737 76877737 A C ST6GALNAC3 Silent p.S86S 0.11 TCGA-S8-A6BV-01 20 10032330 10032330 G A ANKEF1 Missense_Mutation p.D555N 0.35 deleterious(0) probably_damaging(1) TCGA-S8-A6BV-01 20 25011577 25011577 G C ACSS1 Missense_Mutation p.T150R 0.22 deleterious(0) probably_damaging(0.992) TCGA-S8-A6BV-01 20 30671802 30671802 G A HCK Missense_Mutation p.R213Q 0.20 deleterious(0.01) benign(0.265) TCGA-S8-A6BV-01 20 40944500 40944500 A C PTPRT Missense_Mutation p.L668V 0.41 deleterious(0) benign(0.133) TCGA-S8-A6BV-01 20 43353590 43353590 C T WISP2 Silent p.C163C 0.18 TCGA-S8-A6BV-01 20 55027029 55027029 A G CASS4 Missense_Mutation p.E266G 0.35 tolerated(0.13) benign(0.008) TCGA-S8-A6BV-01 20 57428459 57428459 G A GNAS Missense_Mutation p.E47K 0.29 deleterious_low_confidence(0.03) unknown(0) TCGA-S8-A6BV-01 20 62172557 62172557 C G SRMS Missense_Mutation p.Q424H 0.17 deleterious(0.01) probably_damaging(0.933) TCGA-S8-A6BV-01 20 62737466 62737466 C T NPBWR2 Missense_Mutation p.R240Q 0.18 tolerated(0.15) benign(0.024) TCGA-S8-A6BV-01 21 11038784 11038784 C A BAGE2 RNA 0.05 TCGA-S8-A6BV-01 22 17525784 17525784 G A CECR7 RNA 0.25 TCGA-S8-A6BV-01 22 33402707 33402707 A C SYN3 5'UTR 0.33 TCGA-S8-A6BV-01 22 46327149 46327149 G A WNT7B Silent p.C133C 0.35 TCGA-S8-A6BV-01 22 46654703 46654703 G C PKDREJ Missense_Mutation p.P1506R 0.18 tolerated(0.14) benign(0.023) TCGA-S8-A6BV-01 2 120005349 120005349 C T STEAP3 Missense_Mutation p.A206V 0.21 tolerated(0.79) benign(0.003) TCGA-S8-A6BV-01 2 130832862 130832862 C T POTEF Missense_Mutation p.R728Q 0.22 deleterious_low_confidence(0.03) possibly_damaging(0.778) TCGA-S8-A6BV-01 2 1371122 1371122 A G SNTG2 Missense_Mutation p.E499G 0.17 deleterious(0) possibly_damaging(0.848) TCGA-S8-A6BV-01 2 141079546 141079546 T C LRP1B Missense_Mutation p.D4209G 0.19 possibly_damaging(0.539) TCGA-S8-A6BV-01 2 152657655 152657655 A G ARL5A 3'UTR 0.18 TCGA-S8-A6BV-01 2 163002170 163002170 C T GCG Missense_Mutation p.R91H 0.20 tolerated(0.12) benign(0.028) TCGA-S8-A6BV-01 2 1670070 1670070 C T PXDN Missense_Mutation p.V403I 0.11 tolerated(0.12) benign(0.003) TCGA-S8-A6BV-01 2 167089906 167089906 G A SCN9A Missense_Mutation p.R1279W 0.15 deleterious(0) probably_damaging(1) TCGA-S8-A6BV-01 2 170940331 170940331 A G UBR3 3'UTR 0.17 TCGA-S8-A6BV-01 2 188211037 188211037 A C CALCRL Silent p.S420S 0.22 TCGA-S8-A6BV-01 2 200245168 200245168 A C SATB2 Missense_Mutation p.H172Q 0.54 deleterious(0.02) possibly_damaging(0.889) TCGA-S8-A6BV-01 2 207834128 207834128 G A CPO Missense_Mutation p.G365S 0.10 tolerated(1) unknown(0) TCGA-S8-A6BV-01 2 210678324 210678324 C T UNC80 Missense_Mutation p.P320L 0.16 probably_damaging(0.969) TCGA-S8-A6BV-01 2 216184451 216184451 T C ATIC Missense_Mutation p.I96T 0.16 deleterious(0) probably_damaging(0.989) TCGA-S8-A6BV-01 2 25344587 25344587 C T EFR3B Missense_Mutation p.R137W 0.14 deleterious(0) probably_damaging(1) TCGA-S8-A6BV-01 2 29023191 29023191 C G PPP1CB 3'UTR 0.23 TCGA-S8-A6BV-01 2 29258449 29258449 G A FAM179A Missense_Mutation p.R782Q 0.16 deleterious(0) probably_damaging(0.992) TCGA-S8-A6BV-01 2 5834871 5834871 A G SOX11 3'UTR 0.18 TCGA-S8-A6BV-01 2 5838192 5838192 T C SOX11 3'UTR 0.17 TCGA-S8-A6BV-01 2 73519308 73519308 G A EGR4 Silent p.I349I 0.30 TCGA-S8-A6BV-01 2 75917156 75917156 T C GCFC2 Silent p.E426E 0.15 TCGA-S8-A6BV-01 2 89999403 89999403 C G IGKV2D-28 Missense_Mutation p.P69A 0.24 deleterious(0.01) probably_damaging(0.915) TCGA-S8-A6BV-01 2 95542325 95542325 C A TEKT4 Missense_Mutation p.N373K 0.12 tolerated(0.76) benign(0.043) TCGA-S8-A6BV-01 3 108353773 108353773 G T DZIP3 Missense_Mutation p.C291F 0.13 deleterious(0) possibly_damaging(0.542) TCGA-S8-A6BV-01 3 113327302 113327302 G A SIDT1 Missense_Mutation p.A547T 0.19 deleterious(0.01) possibly_damaging(0.612) TCGA-S8-A6BV-01 3 147108838 147108838 C T ZIC4 Missense_Mutation p.S345N 0.09 deleterious(0.01) benign(0.035) TCGA-S8-A6BV-01 3 21467136 21467136 C A ZNF385D Missense_Mutation p.A234S 0.16 deleterious(0.01) probably_damaging(0.935) TCGA-S8-A6BV-01 3 45944473 45944474 - C CCR9 3'UTR 0.24 TCGA-S8-A6BV-01 4 100521876 100521876 C T MTTP Silent p.L408L 0.18 TCGA-S8-A6BV-01 4 100521881 100521881 A C MTTP Missense_Mutation p.R409S 0.18 tolerated(0.08) benign(0.027) TCGA-S8-A6BV-01 4 113508884 113508884 G T C4orf21 Nonsense_Mutation p.S1110* 0.08 TCGA-S8-A6BV-01 4 118005745 118005745 C T TRAM1L1 Missense_Mutation p.V269I 0.16 tolerated(0.09) benign(0.262) TCGA-S8-A6BV-01 4 2664632 2664632 T C FAM193A Missense_Mutation p.Y314H 0.08 tolerated(0.07) probably_damaging(0.994) TCGA-S8-A6BV-01 4 2692599 2692599 C - FAM193A Frame_Shift_Del p.T612Rfs*32 0.23 TCGA-S8-A6BV-01 4 3319104 3319104 C G RGS12 Missense_Mutation p.R403G 0.10 deleterious(0) probably_damaging(0.998) TCGA-S8-A6BV-01 4 436778 436778 C G ZNF721 Missense_Mutation p.R493T 0.20 tolerated(0.07) possibly_damaging(0.737) TCGA-S8-A6BV-01 4 6037791 6037791 T C JAKMIP1 Missense_Mutation p.Q740R 0.11 deleterious(0.01) possibly_damaging(0.604) TCGA-S8-A6BV-01 4 62067037 62067037 G A LPHN3 5'Flank 0.20 TCGA-S8-A6BV-01 4 62758482 62758482 G A LPHN3 Missense_Mutation p.R462K 0.24 tolerated(0.34) benign(0.004) TCGA-S8-A6BV-01 4 87672182 87672182 C G PTPN13 Nonsense_Mutation p.S1024* 0.22 TCGA-S8-A6BV-01 5 1213683 1213683 C G SLC6A19 Missense_Mutation p.P257A 0.18 deleterious(0.03) benign(0.309) TCGA-S8-A6BV-01 5 140186794 140186794 G A PCDHA4 Missense_Mutation p.G8S 0.16 tolerated_low_confidence(0.12) benign(0.005) TCGA-S8-A6BV-01 5 140502955 140502955 G A PCDHB4 Missense_Mutation p.V459I 0.20 tolerated_low_confidence(0.15) possibly_damaging(0.707) TCGA-S8-A6BV-01 5 140554213 140554213 C T PCDHB7 Silent p.N599N 0.19 TCGA-S8-A6BV-01 5 140723816 140723816 G A PCDHGA3 Silent p.T72T 0.18 TCGA-S8-A6BV-01 5 156957869 156957869 G A ADAM19 Missense_Mutation p.T118M 0.29 tolerated(0.26) benign(0.058) TCGA-S8-A6BV-01 5 162940917 162940917 G A MAT2B Missense_Mutation p.R148K 0.33 tolerated(1) benign(0) TCGA-S8-A6BV-01 5 17354524 17354524 G A CTD-2139B15.2 RNA 0.13 TCGA-S8-A6BV-01 5 178045592 178045592 G A CLK4 Missense_Mutation p.R117C 0.18 tolerated(0.06) benign(0.394) TCGA-S8-A6BV-01 5 96271507 96271507 G T LNPEP 5'UTR 0.23 TCGA-S8-A6BV-01 5 98106243 98106243 C G RGMB Intron 0.13 TCGA-S8-A6BV-01 6 131919806 131919806 G A MED23 Silent p.N772N 0.27 TCGA-S8-A6BV-01 6 143828513 143828513 T G FUCA2 Missense_Mutation p.K91N 0.24 tolerated(0.34) benign(0.013) TCGA-S8-A6BV-01 6 25776845 25776845 C T SLC17A4 Missense_Mutation p.P337L 0.22 tolerated(0.14) benign(0.135) TCGA-S8-A6BV-01 6 33138892 33138892 G A COL11A2 Missense_Mutation p.A1036V 0.27 possibly_damaging(0.695) TCGA-S8-A6BV-01 6 348942 348942 G A DUSP22 Intron 0.12 TCGA-S8-A6BV-01 6 41749236 41749236 A C PRICKLE4 5'UTR 0.05 TCGA-S8-A6BV-01 7 100677376 100677376 C T MUC17 Silent p.S893S 0.09 TCGA-S8-A6BV-01 7 103243923 103243923 T C RELN Missense_Mutation p.Y1054C 0.28 deleterious(0.01) possibly_damaging(0.75) TCGA-S8-A6BV-01 7 105142884 105142884 C T PUS7 Missense_Mutation p.G238E 0.45 deleterious(0.04) benign(0.043) TCGA-S8-A6BV-01 7 10973276 10973276 C T NDUFA4 Missense_Mutation p.R78H 0.22 tolerated(0.05) benign(0.005) TCGA-S8-A6BV-01 7 114330819 114330819 A C FOXP2 3'UTR 0.11 TCGA-S8-A6BV-01 7 141364844 141364844 C A KIAA1147 Missense_Mutation p.E321D 0.48 deleterious(0.03) possibly_damaging(0.532) TCGA-S8-A6BV-01 7 15599775 15599775 C T AGMO Missense_Mutation p.R83Q 0.20 tolerated(0.43) benign(0.003) TCGA-S8-A6BV-01 7 69755386 69755386 A G AUTS2 Intron 0.15 TCGA-S8-A6BV-01 7 72658020 72658020 T A GTF2IRD2P1 RNA 0.13 TCGA-S8-A6BV-01 8 11223103 11223103 C A C8orf12 5'Flank 0.27 TCGA-S8-A6BV-01 8 120847177 120847177 G C DSCC1 Missense_Mutation p.Q380E 0.13 tolerated(0.11) benign(0.138) TCGA-S8-A6BV-01 8 27094334 27094334 G T STMN4 3'UTR 0.14 TCGA-S8-A6BV-01 8 2966266 2966266 C T CSMD1 Missense_Mutation p.G2205S 0.32 probably_damaging(1) TCGA-S8-A6BV-01 8 55533956 55533956 G T RP1 Missense_Mutation p.V144F 0.09 tolerated(0.26) benign(0.219) TCGA-S8-A6BV-01 8 56438709 56438709 A G XKR4 3'UTR 0.10 TCGA-S8-A6BV-01 8 69005844 69005844 A G PREX2 Missense_Mutation p.D752G 0.12 tolerated_low_confidence(0.89) possibly_damaging(0.493) TCGA-S8-A6BV-01 8 77775556 77775556 C G ZFHX4 Missense_Mutation p.I3202M 0.21 probably_damaging(0.935) TCGA-S8-A6BV-01 8 77895549 77895549 C T PEX2 Missense_Mutation p.S289N 0.37 tolerated(0.39) benign(0.001) TCGA-S8-A6BV-01 8 95182682 95182682 G A CDH17 Missense_Mutation p.P337S 0.09 deleterious(0.02) benign(0.128) TCGA-S8-A6BV-01 9 101915365 101915365 A T TGFBR1 3'UTR 0.45 TCGA-S8-A6BV-01 9 113312185 113312185 T G SVEP1 Missense_Mutation p.Y244S 0.20 probably_damaging(0.962) TCGA-S8-A6BV-01 9 115983550 115983550 G A FKBP15 5'UTR 0.12 TCGA-S8-A6BV-01 9 125752361 125752361 C T RABGAP1 Silent p.A264A 0.09 TCGA-S8-A6BV-01 9 130928628 130928628 C T CIZ1 Missense_Mutation p.A849T 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-S8-A6BV-01 9 135203054 135203054 G A SETX Missense_Mutation p.R1311C 0.36 deleterious(0) probably_damaging(1) TCGA-S8-A6BV-01 9 136389832 136389832 C T TMEM8C Silent p.A45A 0.11 TCGA-S8-A6BV-01 9 139998207 139998207 G C MAN1B1 Intron 0.08 TCGA-S8-A6BV-01 9 140473262 140473262 T C DPH7 5'UTR 0.54 TCGA-S8-A6BV-01 9 75524572 75524572 T G ALDH1A1 Missense_Mutation p.K435T 0.55 deleterious(0.04) benign(0.235) TCGA-S8-A6BV-01 9 79319864 79319864 G A PRUNE2 Silent p.N2442N 0.36 TCGA-S8-A6BV-01 9 97849070 97849070 C T C9orf3 3'UTR 0.16 TCGA-S8-A6BV-01 X 132435100 132435100 A G GPC4 3'UTR 0.73 TCGA-S8-A6BV-01 X 49958695 49958695 T C AKAP4 Silent p.R223R 0.30 TCGA-S8-A6BV-01 X 50659038 50659038 C T BMP15 Nonsense_Mutation p.R204* 0.31 TCGA-S8-A6BV-01 X 90691869 90691869 T G PABPC5 3'UTR 0.37 TCGA-S8-A6BV-01 X 92926664 92926664 T G NAP1L3 3'UTR 0.25 TCGA-S8-A6BW-01 10 118424288 118424288 G C C10orf82 Missense_Mutation p.L149V 0.19 deleterious_low_confidence(0.02) possibly_damaging(0.72) TCGA-S8-A6BW-01 10 16796955 16796955 G A RSU1 Silent p.F105F 0.18 TCGA-S8-A6BW-01 10 20568869 20568869 G A PLXDC2 3'UTR 0.44 TCGA-S8-A6BW-01 10 49628338 49628338 C T MAPK8 Silent p.I197I 0.08 TCGA-S8-A6BW-01 10 99218606 99218606 C T MMS19 Missense_Mutation p.D1006N 0.32 deleterious(0) probably_damaging(0.998) TCGA-S8-A6BW-01 11 100922294 100922294 G A PGR Nonsense_Mutation p.R740* 0.67 TCGA-S8-A6BW-01 11 105804513 105804513 C G GRIA4 Missense_Mutation p.F704L 0.16 deleterious(0.02) possibly_damaging(0.476) TCGA-S8-A6BW-01 11 134014150 134014150 C T JAM3 Missense_Mutation p.R91C 0.33 deleterious(0) probably_damaging(1) TCGA-S8-A6BW-01 11 4113083 4113083 C G STIM1 3'UTR 0.28 TCGA-S8-A6BW-01 11 5009484 5009484 T G MMP26 Missense_Mutation p.C15G 0.47 deleterious(0.04) possibly_damaging(0.57) TCGA-S8-A6BW-01 11 5248189 5248189 C A HBB Silent p.V21V 0.22 TCGA-S8-A6BW-01 11 55339864 55339864 G C OR4C16 Missense_Mutation p.K87N 0.22 tolerated(0.15) benign(0.002) TCGA-S8-A6BW-01 11 62439163 62439163 C T C11orf48 5'Flank 0.49 TCGA-S8-A6BW-01 11 66039507 66039507 G A RAB1B Intron 0.29 TCGA-S8-A6BW-01 12 104682792 104682792 A T TXNRD1 Missense_Mutation p.I130L 0.61 tolerated(0.16) benign(0.003) TCGA-S8-A6BW-01 12 122247572 122247572 T C SETD1B Missense_Mutation p.S241P 0.13 benign(0.253) TCGA-S8-A6BW-01 12 125591780 125591780 C G AACS Missense_Mutation p.T294R 0.48 deleterious(0) probably_damaging(0.994) TCGA-S8-A6BW-01 12 13369567 13369567 A T EMP1 3'UTR 0.38 TCGA-S8-A6BW-01 12 20523043 20523043 G A PDE3A Silent p.L275L 0.14 TCGA-S8-A6BW-01 12 2690840 2690840 C G CACNA1C Silent p.L660L 0.37 TCGA-S8-A6BW-01 12 45741883 45741883 A G ANO6 Missense_Mutation p.M161V 0.45 deleterious(0.03) benign(0.094) TCGA-S8-A6BW-01 12 4737281 4737281 G T AKAP3 Silent p.R263R 0.30 TCGA-S8-A6BW-01 12 62902072 62902072 G A MON2 Missense_Mutation p.E266K 0.17 deleterious(0) possibly_damaging(0.584) TCGA-S8-A6BW-01 12 64456779 64456779 G A SRGAP1 Missense_Mutation p.R295K 0.15 tolerated(0.47) benign(0.004) TCGA-S8-A6BW-01 12 64823865 64823865 C T XPOT Nonsense_Mutation p.Q592* 0.09 TCGA-S8-A6BW-01 12 66932939 66932939 G A GRIP1 Missense_Mutation p.R113C 0.08 deleterious(0) probably_damaging(0.994) TCGA-S8-A6BW-01 12 69109443 69109443 G A NUP107 Missense_Mutation p.D336N 0.34 tolerated(0.64) probably_damaging(0.962) TCGA-S8-A6BW-01 12 81760937 81760937 G C PPFIA2 Missense_Mutation p.Q499E 0.67 tolerated(0.3) benign(0.205) TCGA-S8-A6BW-01 12 89996880 89996880 G A ATP2B1 Silent p.F1000F 0.23 TCGA-S8-A6BW-01 13 41654920 41654920 G A WBP4 Missense_Mutation p.E299K 0.09 tolerated(0.27) benign(0.019) TCGA-S8-A6BW-01 13 66878818 66878818 G T PCDH9 Missense_Mutation p.A1228D 0.17 tolerated(0.55) benign(0.029) TCGA-S8-A6BW-01 14 102552699 102552699 T A HSP90AA1 Missense_Mutation p.Q128L 0.40 tolerated_low_confidence(0.24) benign(0.194) TCGA-S8-A6BW-01 14 20345270 20345270 C T OR4K2 Silent p.L282L 0.09 TCGA-S8-A6BW-01 14 38681377 38681377 T C SSTR1 3'UTR 0.21 TCGA-S8-A6BW-01 14 45584672 45584672 G A PRPF39 3'UTR 0.19 TCGA-S8-A6BW-01 14 68054480 68054480 G T PLEKHH1 3'UTR 0.39 TCGA-S8-A6BW-01 14 81609998 81609998 G A TSHR Silent p.K532K 0.29 TCGA-S8-A6BW-01 14 96752109 96752109 G A ATG2B Missense_Mutation p.R2074C 0.48 deleterious(0) probably_damaging(0.995) TCGA-S8-A6BW-01 15 25415878 25415878 G A SNORD115-1 RNA 0.17 TCGA-S8-A6BW-01 15 40662376 40662376 G A DISP2 Missense_Mutation p.A1355T 0.27 tolerated_low_confidence(0.23) benign(0.006) TCGA-S8-A6BW-01 15 44105232 44105233 - TTCC MFAP1 Frame_Shift_Ins p.V281Efs*19 0.38 TCGA-S8-A6BW-01 15 52513403 52513403 T G MYO5C Missense_Mutation p.Q1226P 0.25 tolerated(0.07) benign(0.089) TCGA-S8-A6BW-01 15 90771613 90771613 G A SEMA4B Missense_Mutation p.G751E 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-S8-A6BW-01 15 91525181 91525181 C G PRC1 Missense_Mutation p.E100Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-S8-A6BW-01 15 98981477 98981477 G A FAM169B 3'UTR 0.23 TCGA-S8-A6BW-01 16 135510 135510 G A MPG Missense_Mutation p.D211N 0.19 tolerated(0.08) probably_damaging(0.918) TCGA-S8-A6BW-01 16 2088256 2088256 G A SLC9A3R2 3'UTR 0.15 TCGA-S8-A6BW-01 16 21139069 21139069 G A DNAH3 Nonsense_Mutation p.Q383* 0.17 TCGA-S8-A6BW-01 16 29859260 29859260 C T MVP Nonsense_Mutation p.Q878* 0.09 TCGA-S8-A6BW-01 16 4411430 4411430 G A CORO7 Missense_Mutation p.T540M 0.06 deleterious(0) probably_damaging(1) TCGA-S8-A6BW-01 16 68332803 68332803 G A SLC7A6 3'UTR 0.30 TCGA-S8-A6BW-01 16 88505440 88505440 C A ZNF469 Silent p.P3826P 0.18 TCGA-S8-A6BW-01 17 26206315 26206315 A G LYRM9 3'UTR 0.33 TCGA-S8-A6BW-01 17 26988906 26988906 C G SDF2 5'UTR 0.40 TCGA-S8-A6BW-01 17 30821801 30821801 G A MYO1D Silent p.F999F 0.07 TCGA-S8-A6BW-01 17 47676686 47676686 T A SPOP 3'UTR 0.09 TCGA-S8-A6BW-01 17 61987321 61987321 C T CSHL1 Intron 0.11 TCGA-S8-A6BW-01 17 7578553 7578553 T G TP53 Missense_Mutation p.Y126S 0.58 deleterious(0) probably_damaging(1) TCGA-S8-A6BW-01 18 14478264 14478264 G A CXADRP3 RNA 0.06 TCGA-S8-A6BW-01 18 31319196 31319196 G T ASXL3 Nonsense_Mutation p.E610* 0.41 TCGA-S8-A6BW-01 18 47311700 47311700 G T ACAA2 Missense_Mutation p.Q326K 0.27 deleterious(0) probably_damaging(1) TCGA-S8-A6BW-01 18 61264278 61264278 C G SERPINB13 Missense_Mutation p.P286R 0.39 deleterious(0) probably_damaging(1) TCGA-S8-A6BW-01 18 671442 671442 G A TYMS Silent p.L265L 0.09 TCGA-S8-A6BW-01 18 723785 723785 T C YES1 3'UTR 0.34 TCGA-S8-A6BW-01 19 10370426 10370426 C T MRPL4 Silent p.S291S 0.37 TCGA-S8-A6BW-01 19 33168099 33168099 G A RGS9BP 3'UTR 0.41 TCGA-S8-A6BW-01 19 35994206 35994206 T - DMKN Intron 0.25 TCGA-S8-A6BW-01 19 3902495 3902495 G C ATCAY Missense_Mutation p.E30Q 0.10 deleterious(0.02) possibly_damaging(0.653) TCGA-S8-A6BW-01 19 50102744 50102744 C G PRR12 Silent p.L1298L 0.27 TCGA-S8-A6BW-01 19 50334095 50334095 C A MED25 Missense_Mutation p.A351D 0.24 deleterious(0.01) benign(0.272) TCGA-S8-A6BW-01 19 52941771 52941771 C T ZNF534 Missense_Mutation p.P366L 0.51 deleterious(0.05) unknown(0) TCGA-S8-A6BW-01 19 53886016 53886016 C A ZNF525 3'UTR 0.36 TCGA-S8-A6BW-01 19 55286739 55286739 G A KIR2DL1 Missense_Mutation p.E165K 0.19 tolerated(0.21) possibly_damaging(0.789) TCGA-S8-A6BW-01 19 5724873 5724873 G C CATSPERD Silent p.G42G 0.11 TCGA-S8-A6BW-01 1 111957458 111957458 C T OVGP1 Silent p.E555E 0.18 TCGA-S8-A6BW-01 1 152760209 152760209 C G LCE1E 3'UTR 0.38 TCGA-S8-A6BW-01 1 160062078 160062078 T C IGSF8 Missense_Mutation p.M574V 0.41 tolerated(0.06) benign(0.003) TCGA-S8-A6BW-01 1 216896593 216896593 C A ESRRG 5'UTR 0.33 TCGA-S8-A6BW-01 1 223568089 223568089 G C C1orf65 Silent p.L424L 0.17 TCGA-S8-A6BW-01 1 242687455 242687455 T G PLD5 Missense_Mutation p.S42R 0.38 deleterious(0.01) possibly_damaging(0.686) TCGA-S8-A6BW-01 1 66067198 66067198 C T LEPR Missense_Mutation p.A373V 0.67 deleterious(0.01) possibly_damaging(0.893) TCGA-S8-A6BW-01 1 89885842 89885842 C T GBP1P1 RNA 0.23 TCGA-S8-A6BW-01 20 20563841 20563841 C A RALGAPA2 Missense_Mutation p.G854C 0.24 deleterious(0.01) probably_damaging(0.952) TCGA-S8-A6BW-01 20 48600834 48600834 G A SNAI1 Missense_Mutation p.G186R 0.15 deleterious(0) probably_damaging(1) TCGA-S8-A6BW-01 20 4913292 4913292 C T SLC23A2 5'UTR 0.33 TCGA-S8-A6BW-01 21 31692517 31692517 A G KRTAP26-1 5'UTR 0.26 TCGA-S8-A6BW-01 21 40720242 40720242 C T HMGN1 Silent p.A34A 0.60 TCGA-S8-A6BW-01 22 42670129 42670129 C T Z83851.3 RNA 0.17 TCGA-S8-A6BW-01 22 44178174 44178174 C T EFCAB6 Missense_Mutation p.D9N 0.26 tolerated_low_confidence(0.31) benign(0.015) TCGA-S8-A6BW-01 22 45592462 45592462 G A KIAA0930 3'UTR 0.19 TCGA-S8-A6BW-01 2 109092295 109092295 G A GCC2 Missense_Mutation p.E1017K 0.15 deleterious(0) probably_damaging(0.985) TCGA-S8-A6BW-01 2 11742612 11742612 C T GREB1 Silent p.L870L 0.17 TCGA-S8-A6BW-01 2 128520663 128520663 G A WDR33 Missense_Mutation p.R233C 0.11 deleterious(0) unknown(0) TCGA-S8-A6BW-01 2 170096091 170096091 A T LRP2 Missense_Mutation p.S1414T 0.66 benign(0.006) TCGA-S8-A6BW-01 2 176984358 176984358 T G HOXD10 3'UTR 0.09 TCGA-S8-A6BW-01 2 179399177 179399177 C G TTN Silent p.V34055V 0.24 TCGA-S8-A6BW-01 2 179459077 179459077 C T TTN Missense_Mutation p.E19382K 0.16 TCGA-S8-A6BW-01 2 185803049 185803049 G T ZNF804A Missense_Mutation p.A976S 0.19 deleterious(0.04) probably_damaging(0.968) TCGA-S8-A6BW-01 2 186671724 186671724 G A FSIP2 Missense_Mutation p.M5986I 0.17 benign(0) TCGA-S8-A6BW-01 2 201719347 201719347 C G CLK1 Missense_Mutation p.Q446H 0.06 tolerated(0.22) benign(0.404) TCGA-S8-A6BW-01 2 27601662 27601662 G A ZNF513 Silent p.F157F 0.19 TCGA-S8-A6BW-01 2 43971084 43971084 C T PLEKHH2 Missense_Mutation p.P1171S 0.20 deleterious(0) possibly_damaging(0.841) TCGA-S8-A6BW-01 2 75115128 75115128 C T HK2 Missense_Mutation p.S773L 0.41 deleterious(0) probably_damaging(0.999) TCGA-S8-A6BW-01 2 9725328 9725328 T C YWHAQ 3'UTR 0.33 TCGA-S8-A6BW-01 3 113187975 113187975 G T SPICE1 Nonsense_Mutation p.S241* 0.26 TCGA-S8-A6BW-01 3 126261328 126261328 C T CHST13 Silent p.I311I 0.12 TCGA-S8-A6BW-01 3 128181534 128181534 G A DNAJB8 Silent p.S185S 0.12 TCGA-S8-A6BW-01 3 164786915 164786915 G A SI Silent p.F108F 0.13 TCGA-S8-A6BW-01 3 176742661 176742661 G A TBL1XR1 3'UTR 0.16 TCGA-S8-A6BW-01 3 47462508 47462508 G A SCAP Silent p.L419L 0.27 TCGA-S8-A6BW-01 3 97593361 97593361 C G CRYBG3 Missense_Mutation p.S1108C 0.17 TCGA-S8-A6BW-01 4 139979834 139979834 G A ELF2 3'UTR 0.50 TCGA-S8-A6BW-01 4 3134324 3134324 G A HTT Missense_Mutation p.D758N 0.17 benign(0.003) TCGA-S8-A6BW-01 4 71634361 71634361 G A RUFY3 Missense_Mutation p.E227K 0.43 deleterious(0.01) possibly_damaging(0.486) TCGA-S8-A6BW-01 5 140242307 140242307 G A AC005609.1 3'UTR 0.29 TCGA-S8-A6BW-01 5 31323263 31323263 G A CDH6 Missense_Mutation p.E741K 0.28 deleterious(0) probably_damaging(0.992) TCGA-S8-A6BW-01 5 70810788 70810788 G T BDP1 Missense_Mutation p.M1496I 0.22 tolerated(0.06) benign(0.011) TCGA-S8-A6BW-01 5 79733702 79733702 C T ZFYVE16 Nonsense_Mutation p.Q400* 0.23 TCGA-S8-A6BW-01 5 79733788 79733788 C G ZFYVE16 Missense_Mutation p.F428L 0.21 tolerated(0.74) benign(0.001) TCGA-S8-A6BW-01 5 82837230 82837230 A G VCAN Missense_Mutation p.N2803S 0.43 tolerated(0.8) benign(0.002) TCGA-S8-A6BW-01 6 135515008 135515008 A C MYB Missense_Mutation p.L265F 0.27 tolerated(0.48) probably_damaging(0.994) TCGA-S8-A6BW-01 6 163836333 163836333 G T QKI Silent p.G36G 0.23 TCGA-S8-A6BW-01 6 26271561 26271561 G A HIST1H3G Missense_Mutation p.R18C 0.25 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-S8-A6BW-01 6 30888139 30888139 G A VARS2 Silent p.K471K 0.33 TCGA-S8-A6BW-01 6 44355478 44355478 G A CDC5L 5'UTR 0.51 TCGA-S8-A6BW-01 6 49825077 49825077 C T CRISP1 Missense_Mutation p.A13T 0.15 tolerated(0.17) benign(0.197) TCGA-S8-A6BW-01 6 65655728 65655728 C A EYS Missense_Mutation p.C780F 0.35 deleterious(0) probably_damaging(0.955) TCGA-S8-A6BW-01 6 70978510 70978510 C T COL9A1 Missense_Mutation p.M428I 0.11 possibly_damaging(0.472) TCGA-S8-A6BW-01 6 90398430 90398430 C T MDN1 Silent p.V3707V 0.35 TCGA-S8-A6BW-01 7 102920598 102920598 A G DPY19L2P2 RNA 0.25 TCGA-S8-A6BW-01 7 143050700 143050700 T C FAM131B 3'UTR 0.31 TCGA-S8-A6BW-01 7 150935679 150935679 G A CHPF2 Missense_Mutation p.R744H 0.12 deleterious(0.03) benign(0.413) TCGA-S8-A6BW-01 7 38468255 38468255 G A AMPH Intron 0.19 TCGA-S8-A6BW-01 7 41730069 41730069 C T INHBA Missense_Mutation p.E154K 0.38 deleterious(0.02) benign(0.393) TCGA-S8-A6BW-01 7 90896512 90896512 G C FZD1 3'UTR 0.15 TCGA-S8-A6BW-01 8 145578374 145578374 G A TMEM249 Silent p.F18F 0.35 TCGA-S8-A6BW-01 8 18490287 18490287 G A PSD3 Missense_Mutation p.S749L 0.29 deleterious(0.04) benign(0.048) TCGA-S8-A6BW-01 8 21982912 21982912 G A HR Silent p.L554L 0.58 TCGA-S8-A6BW-01 8 25280810 25280810 G A GNRH1 Silent p.L13L 0.19 TCGA-S8-A6BW-01 8 35651179 35651179 C A UNC5D 3'Flank 0.19 TCGA-S8-A6BW-01 8 42587155 42587155 C A CHRNB3 Missense_Mutation p.F235L 0.08 deleterious(0) probably_damaging(0.991) TCGA-S8-A6BW-01 8 57079116 57079116 C G PLAG1 Missense_Mutation p.D397H 0.53 tolerated(0.07) benign(0.122) TCGA-S8-A6BW-01 8 57358447 57358447 C T PENK Silent p.V22V 0.48 TCGA-S8-A6BW-01 8 61777889 61777889 C G CHD7 Silent p.P2797P 0.27 TCGA-S8-A6BW-01 8 82606673 82606673 G A SLC10A5 Missense_Mutation p.L179F 0.24 deleterious(0) probably_damaging(0.999) TCGA-S8-A6BW-01 9 102744932 102744932 A - ERP44 Frame_Shift_Del p.Y395Ifs*6 0.33 TCGA-S8-A6BW-01 9 104160850 104160850 T A MRPL50 Missense_Mutation p.I9F 0.29 tolerated_low_confidence(0.24) benign(0.001) TCGA-S8-A6BW-01 9 109686919 109686919 C A ZNF462 Missense_Mutation p.N242K 0.51 benign(0.403) TCGA-S8-A6BW-01 9 138703425 138703425 G A CAMSAP1 Silent p.I1513I 0.10 TCGA-S8-A6BW-01 9 32459470 32459470 G A DDX58 Nonsense_Mutation p.Q794* 0.77 TCGA-S8-A6BW-01 9 8484252 8484252 C T PTPRD Missense_Mutation p.G1094R 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-S8-A6BW-01 X 131209203 131209203 C T MST4 3'UTR 0.85 TCGA-S8-A6BW-01 X 153127555 153127555 G A L1CAM 3'UTR 0.20 TCGA-S8-A6BW-01 X 153291359 153291359 C T MECP2 3'Flank 0.36 TCGA-S8-A6BW-01 X 40513746 40513746 G A MED14 Silent p.I1387I 0.28 TCGA-S8-A6BW-01 X 49958407 49958407 C T AKAP4 Silent p.Q319Q 0.30 TCGA-S8-A6BW-01 Y 23702662 23702662 G A RBMY1A1 Splice_Site p.X131_splice 0.12 TCGA-V5-A7RB-01 10 106125647 106125647 C A CCDC147 Missense_Mutation p.L225I 0.21 tolerated(0.14) benign(0.249) TCGA-V5-A7RB-01 10 11375437 11375437 A C CELF2 3'UTR 0.30 TCGA-V5-A7RB-01 10 115380372 115380372 G C NRAP Silent p.L955L 0.20 TCGA-V5-A7RB-01 10 115806208 115806208 T A ADRB1 3'UTR 0.21 TCGA-V5-A7RB-01 10 117040912 117040912 T C ATRNL1 Silent p.C716C 0.29 TCGA-V5-A7RB-01 10 120354616 120354616 G A PRLHR Silent p.V47V 0.45 TCGA-V5-A7RB-01 10 128974405 128974405 G A FAM196A Silent p.R85R 0.13 TCGA-V5-A7RB-01 10 14560768 14560768 C A FAM107B 3'UTR 0.11 TCGA-V5-A7RB-01 10 16553562 16553562 C G PTER 3'UTR 0.14 TCGA-V5-A7RB-01 10 24762740 24762740 G C KIAA1217 Missense_Mutation p.R477T 0.37 deleterious(0) probably_damaging(0.996) TCGA-V5-A7RB-01 10 25883308 25883308 G C GPR158 Silent p.G660G 0.19 TCGA-V5-A7RB-01 10 50835702 50835702 G T CHAT Missense_Mutation p.D328Y 0.29 deleterious(0) probably_damaging(0.998) TCGA-V5-A7RB-01 10 60560031 60560031 G A BICC1 Silent p.P601P 0.29 TCGA-V5-A7RB-01 10 61122452 61122452 G C FAM13C 5'Flank 0.22 TCGA-V5-A7RB-01 10 61819154 61819154 C T ANK3 Silent p.E4210E 0.33 TCGA-V5-A7RB-01 10 87484263 87484263 G A GRID1 Silent p.C568C 0.07 TCGA-V5-A7RB-01 10 92675939 92675939 C T ANKRD1 Missense_Mutation p.A214T 0.09 tolerated(0.11) benign(0.052) TCGA-V5-A7RB-01 10 96058148 96058148 G A PLCE1 Missense_Mutation p.G1727D 0.11 tolerated(0.05) possibly_damaging(0.835) TCGA-V5-A7RB-01 11 103022954 103022954 A G DYNC2H1 Silent p.K1012K 0.26 TCGA-V5-A7RB-01 11 116661515 116661515 C T APOA5 Missense_Mutation p.V144M 0.32 deleterious(0.04) benign(0.173) TCGA-V5-A7RB-01 11 118366503 118366503 G A KMT2A Missense_Mutation p.E1818K 0.36 probably_damaging(0.937) TCGA-V5-A7RB-01 11 11989986 11989986 C A DKK3 Missense_Mutation p.A162S 0.17 tolerated(1) benign(0.035) TCGA-V5-A7RB-01 11 120690507 120690507 A G GRIK4 Missense_Mutation p.Q130R 0.23 tolerated(0.34) benign(0.051) TCGA-V5-A7RB-01 11 19204208 19204208 C T CSRP3 3'UTR 0.27 TCGA-V5-A7RB-01 11 20083861 20083861 T A NAV2 Missense_Mutation p.S1670T 0.31 deleterious(0) probably_damaging(0.983) TCGA-V5-A7RB-01 11 20083862 20083862 C A NAV2 Missense_Mutation p.S1670Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-V5-A7RB-01 11 27077102 27077102 A G BBOX1 Missense_Mutation p.D42G 0.21 tolerated(0.38) benign(0.092) TCGA-V5-A7RB-01 11 47330888 47330888 G C MADD Missense_Mutation p.D1330H 0.38 deleterious(0) probably_damaging(0.999) TCGA-V5-A7RB-01 11 5529456 5529456 C G UBQLN3 Missense_Mutation p.V445L 0.36 deleterious(0.04) benign(0.015) TCGA-V5-A7RB-01 11 5529738 5529738 C T UBQLN3 Missense_Mutation p.E351K 0.41 deleterious(0.01) benign(0.154) TCGA-V5-A7RB-01 11 55798108 55798108 A C OR5AS1 Missense_Mutation p.S72R 0.30 deleterious(0.01) benign(0.01) TCGA-V5-A7RB-01 11 558686 558686 C T C11orf35 Nonsense_Mutation p.W80* 0.38 TCGA-V5-A7RB-01 11 58604841 58604841 G C GLYATL2 Silent p.T72T 0.45 TCGA-V5-A7RB-01 11 5862453 5862453 A G OR52E6 Silent p.A225A 0.13 TCGA-V5-A7RB-01 11 64981654 64981654 C G CAPN1 3'Flank 0.07 TCGA-V5-A7RB-01 11 65546066 65546066 G A AP5B1 Missense_Mutation p.P633L 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-V5-A7RB-01 11 67207669 67207669 C T CORO1B Silent p.T309T 0.09 TCGA-V5-A7RB-01 11 70314262 70314262 C T SHANK2 3'Flank 0.19 TCGA-V5-A7RB-01 11 73602157 73602157 A G PAAF1 Missense_Mutation p.K65E 0.25 deleterious(0.05) possibly_damaging(0.551) TCGA-V5-A7RB-01 11 85445679 85445679 G A SYTL2 Silent p.I230I 0.39 TCGA-V5-A7RB-01 11 89431638 89431638 T G FOLH1B RNA 0.21 TCGA-V5-A7RB-01 11 89896949 89896949 G C NAALAD2 Intron 0.30 TCGA-V5-A7RB-01 11 99931958 99931958 T C CNTN5 Missense_Mutation p.I332T 0.33 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 12 101510523 101510523 T C ANO4 Silent p.S804S 0.27 TCGA-V5-A7RB-01 12 110370786 110370788 GTT - GIT2 In_Frame_Del p.N759del 0.32 TCGA-V5-A7RB-01 12 114792553 114792553 C T TBX5 3'UTR 0.31 TCGA-V5-A7RB-01 12 120805876 120805876 A C MSI1 Missense_Mutation p.F68V 0.27 deleterious(0) benign(0.001) TCGA-V5-A7RB-01 12 125437110 125437110 G A DHX37 Missense_Mutation p.A901V 0.12 tolerated(0.25) benign(0.403) TCGA-V5-A7RB-01 12 14609565 14609565 A C ATF7IP Missense_Mutation p.Y689S 0.33 deleterious_low_confidence(0.03) possibly_damaging(0.607) TCGA-V5-A7RB-01 12 21733402 21733402 C T GYS2 Nonsense_Mutation p.W59* 0.35 TCGA-V5-A7RB-01 12 23908618 23908618 T C SOX5 Silent p.K174K 0.36 TCGA-V5-A7RB-01 12 5154628 5154628 T G KCNA5 Missense_Mutation p.F439V 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-V5-A7RB-01 12 53345361 53345361 A G KRT18 Missense_Mutation p.I252V 0.35 tolerated(0.05) benign(0.151) TCGA-V5-A7RB-01 12 54396372 54396372 G T HOXC9 Nonsense_Mutation p.E233* 0.32 TCGA-V5-A7RB-01 12 55356627 55356627 T G TESPA1 Missense_Mutation p.K352T 0.32 deleterious_low_confidence(0.02) benign(0.234) TCGA-V5-A7RB-01 12 64609724 64609724 G C C12orf66 Missense_Mutation p.S85R 0.24 tolerated(0.39) benign(0.223) TCGA-V5-A7RB-01 12 6500173 6500173 G A LTBR 3'UTR 0.06 TCGA-V5-A7RB-01 12 79679573 79679573 C T SYT1 Missense_Mutation p.P58L 0.25 tolerated(0.12) benign(0.008) TCGA-V5-A7RB-01 12 79689976 79689976 A T SYT1 Missense_Mutation p.K201I 0.28 deleterious(0.03) possibly_damaging(0.819) TCGA-V5-A7RB-01 12 85446011 85446011 G C LRRIQ1 Missense_Mutation p.E245D 0.13 tolerated(0.42) possibly_damaging(0.571) TCGA-V5-A7RB-01 12 85518039 85518039 A G LRRIQ1 Missense_Mutation p.Y1250C 0.24 tolerated(0.18) benign(0.002) TCGA-V5-A7RB-01 12 9086980 9086980 G C PHC1 Missense_Mutation p.G720A 0.19 deleterious(0) unknown(0) TCGA-V5-A7RB-01 12 9303324 9303324 T C PZP Missense_Mutation p.S1434G 0.25 deleterious(0.03) benign(0.191) TCGA-V5-A7RB-01 13 107822796 107822796 C T FAM155A 3'UTR 0.11 TCGA-V5-A7RB-01 13 115091442 115091444 TAT - CHAMP1 In_Frame_Del p.Y710del 0.32 TCGA-V5-A7RB-01 13 20220923 20220923 A T MPHOSPH8 Missense_Mutation p.D237V 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-V5-A7RB-01 13 70274936 70274936 T A KLHL1 3'UTR 0.41 TCGA-V5-A7RB-01 13 73305435 73305435 G C BORA Missense_Mutation p.R57T 0.37 tolerated(0.11) possibly_damaging(0.691) TCGA-V5-A7RB-01 13 73305444 73305444 T G BORA Missense_Mutation p.I60S 0.38 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 13 73650531 73650531 T - KLF5 3'UTR 0.22 TCGA-V5-A7RB-01 13 84452407 84452407 A C SLITRK1 3'UTR 0.44 TCGA-V5-A7RB-01 13 92051044 92051044 C T GPC5 5'UTR 0.50 TCGA-V5-A7RB-01 13 92346119 92346119 A C GPC5 Missense_Mutation p.Q335P 0.38 tolerated(1) benign(0.006) TCGA-V5-A7RB-01 14 105924626 105924626 C G MTA1 Missense_Mutation p.D190E 0.33 tolerated(0.61) benign(0.198) TCGA-V5-A7RB-01 14 106829745 106829745 C A IGHV4-34 Missense_Mutation p.W73L 0.34 deleterious(0.01) probably_damaging(0.93) TCGA-V5-A7RB-01 14 22933204 22933204 C A TRDC Missense_Mutation p.H119N 0.47 tolerated(0.62) benign(0.164) TCGA-V5-A7RB-01 14 28734268 28734268 G T BNIP3P1 RNA 0.28 TCGA-V5-A7RB-01 14 31364301 31364301 A G STRN3 3'Flank 0.36 TCGA-V5-A7RB-01 14 38208098 38208098 C T TTC6 Missense_Mutation p.R701C 0.16 tolerated(0.09) benign(0.052) TCGA-V5-A7RB-01 14 52465219 52465219 A T C14orf166 Missense_Mutation p.K98N 0.19 deleterious(0.03) possibly_damaging(0.737) TCGA-V5-A7RB-01 14 67805014 67805014 C T ATP6V1D 3'UTR 0.30 TCGA-V5-A7RB-01 14 73086616 73086616 G A DPF3 Missense_Mutation p.P354L 0.25 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 14 77491802 77491802 G A IRF2BPL Silent p.G778G 0.27 TCGA-V5-A7RB-01 14 94173329 94173329 G T UNC79 3'UTR 0.26 TCGA-V5-A7RB-01 14 99864660 99864660 G T SETD3 3'UTR 0.13 TCGA-V5-A7RB-01 15 25330454 25330454 T C SNORD116-18 5'Flank 0.35 TCGA-V5-A7RB-01 15 25472155 25472155 T C SNORD115-33 5'Flank 0.37 TCGA-V5-A7RB-01 15 28200322 28200322 G A OCA2 Silent p.I608I 0.15 TCGA-V5-A7RB-01 15 28599818 28599818 G T RP11-483E23.2 RNA 0.20 TCGA-V5-A7RB-01 15 43815630 43815630 A G MAP1A Missense_Mutation p.I653M 0.26 probably_damaging(0.999) TCGA-V5-A7RB-01 15 48063701 48063701 T G SEMA6D Missense_Mutation p.L981V 0.25 tolerated(0.89) benign(0.001) TCGA-V5-A7RB-01 15 48065608 48065608 T C SEMA6D 3'UTR 0.25 TCGA-V5-A7RB-01 15 59429365 59429365 T A MYO1E 3'UTR 0.36 TCGA-V5-A7RB-01 15 65870322 65870322 C G PTPLAD1 3'UTR 0.50 TCGA-V5-A7RB-01 15 71175242 71175242 C T THAP10 Silent p.T145T 0.25 TCGA-V5-A7RB-01 15 74422927 74422927 G A ISLR2 5'UTR 0.33 TCGA-V5-A7RB-01 15 83933444 83933444 C G BNC1 Missense_Mutation p.E187Q 0.28 deleterious(0) probably_damaging(0.987) TCGA-V5-A7RB-01 16 12618568 12618568 T A SNX29 Missense_Mutation p.F730I 0.43 deleterious(0.01) probably_damaging(0.997) TCGA-V5-A7RB-01 16 1291569 1291569 C G TPSAB1 Missense_Mutation p.A123G 0.18 deleterious(0.02) benign(0.305) TCGA-V5-A7RB-01 16 20554273 20554273 G A ACSM2B Missense_Mutation p.T491M 0.49 deleterious(0) probably_damaging(0.977) TCGA-V5-A7RB-01 16 4739280 4739280 G A MGRN1 3'UTR 0.40 TCGA-V5-A7RB-01 17 32614790 32614790 A C CCL11 3'UTR 0.41 TCGA-V5-A7RB-01 17 33504597 33504597 C T UNC45B Silent p.L743L 0.22 TCGA-V5-A7RB-01 17 33750022 33750022 G A SLFN12 Missense_Mutation p.T9M 0.30 tolerated(0.08) probably_damaging(0.926) TCGA-V5-A7RB-01 17 34937781 34937781 T C GGNBP2 Missense_Mutation p.V343A 0.23 deleterious(0) possibly_damaging(0.554) TCGA-V5-A7RB-01 17 38856557 38856557 T C KRT24 Missense_Mutation p.K312E 0.30 tolerated(0.56) benign(0.367) TCGA-V5-A7RB-01 17 39673193 39673193 C T KRT15 Missense_Mutation p.R202H 0.23 tolerated(0.06) benign(0.079) TCGA-V5-A7RB-01 17 40370850 40370850 G A STAT5B Missense_Mutation p.R294C 0.23 deleterious(0.02) probably_damaging(0.97) TCGA-V5-A7RB-01 17 40823101 40823101 G A PLEKHH3 Silent p.N444N 0.34 TCGA-V5-A7RB-01 17 42170115 42170115 G A HDAC5 Missense_Mutation p.T235M 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-V5-A7RB-01 17 43190893 43190893 C T PLCD3 Missense_Mutation p.V636I 0.21 tolerated(0.18) benign(0.047) TCGA-V5-A7RB-01 17 56693620 56693620 G A TEX14 Missense_Mutation p.P234L 0.36 tolerated(0.06) benign(0.253) TCGA-V5-A7RB-01 17 72943297 72943297 C T OTOP3 Silent p.L449L 0.26 TCGA-V5-A7RB-01 17 73234307 73234307 G A GGA3 3'UTR 0.35 TCGA-V5-A7RB-01 17 7360019 7360019 C A CHRNB1 Missense_Mutation p.P495T 0.30 tolerated(0.38) benign(0.042) TCGA-V5-A7RB-01 17 74921094 74921094 C A MGAT5B Missense_Mutation p.P369T 0.31 deleterious(0.04) possibly_damaging(0.844) TCGA-V5-A7RB-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.56 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 17 78320875 78320875 G A RNF213 Missense_Mutation p.A2914T 0.28 probably_damaging(1) TCGA-V5-A7RB-01 17 9822999 9822999 C A GAS7 Missense_Mutation p.D388Y 0.26 deleterious(0) probably_damaging(0.987) TCGA-V5-A7RB-01 18 19996085 19996085 G A CTAGE1 Silent p.L564L 0.29 TCGA-V5-A7RB-01 18 31431471 31431471 A C NOL4 3'UTR 0.48 TCGA-V5-A7RB-01 18 5489096 5489096 C T EPB41L3 Silent p.A29A 0.36 TCGA-V5-A7RB-01 18 65179113 65179113 G C DSEL Missense_Mutation p.I921M 0.52 tolerated(0.07) possibly_damaging(0.452) TCGA-V5-A7RB-01 19 10945648 10945648 G A TMED1 Missense_Mutation p.P143S 0.25 tolerated(1) benign(0.042) TCGA-V5-A7RB-01 19 12817172 12817172 G A TNPO2 Silent p.A502A 0.34 TCGA-V5-A7RB-01 19 13410024 13410024 G A CACNA1A Missense_Mutation p.T808M 0.21 benign(0.043) TCGA-V5-A7RB-01 19 15271354 15271354 G A NOTCH3 3'UTR 0.24 TCGA-V5-A7RB-01 19 18980809 18980809 C T GDF1 Missense_Mutation p.R103H 0.55 deleterious(0) probably_damaging(0.965) TCGA-V5-A7RB-01 19 20228743 20228743 A C ZNF90 Missense_Mutation p.K127T 0.29 deleterious(0.03) benign(0.029) TCGA-V5-A7RB-01 19 21909205 21909205 A G ZNF100 3'UTR 0.33 TCGA-V5-A7RB-01 19 21910725 21910725 G A ZNF100 Missense_Mutation p.A130V 0.24 tolerated(1) benign(0) TCGA-V5-A7RB-01 19 22018958 22018958 C T ZNF43 5'UTR 0.29 TCGA-V5-A7RB-01 19 23836409 23836409 A G ZNF675 Silent p.H442H 0.33 TCGA-V5-A7RB-01 19 2434893 2434893 T G LMNB2 Missense_Mutation p.S292R 0.31 deleterious(0.01) possibly_damaging(0.568) TCGA-V5-A7RB-01 19 31766387 31766387 T A TSHZ3 3'UTR 0.42 TCGA-V5-A7RB-01 19 37129715 37129715 C T ZNF461 Missense_Mutation p.S511N 0.19 tolerated(0.4) possibly_damaging(0.631) TCGA-V5-A7RB-01 19 37677689 37677689 C T ZNF585B Silent p.A250A 0.38 TCGA-V5-A7RB-01 19 38047033 38047033 T G ZNF540 Intron 0.28 TCGA-V5-A7RB-01 19 38102847 38102847 A G ZNF540 Silent p.K222K 0.32 TCGA-V5-A7RB-01 19 39198794 39198794 C T ACTN4 Missense_Mutation p.R204W 0.23 deleterious(0) probably_damaging(0.999) TCGA-V5-A7RB-01 19 41105104 41105104 G A LTBP4 Missense_Mutation p.V50I 0.18 tolerated_low_confidence(0.31) benign(0.038) TCGA-V5-A7RB-01 19 44611163 44611163 G C ZNF224 Missense_Mutation p.G284R 0.07 deleterious(0.04) probably_damaging(1) TCGA-V5-A7RB-01 19 46190958 46190958 C T SNRPD2 Silent p.V70V 0.27 TCGA-V5-A7RB-01 19 47844342 47844342 C T C5AR2 Missense_Mutation p.R96C 0.42 tolerated(0.18) possibly_damaging(0.616) TCGA-V5-A7RB-01 19 54711426 54711426 G T RPS9 Missense_Mutation p.D190Y 0.25 deleterious(0) unknown(0) TCGA-V5-A7RB-01 19 55107841 55107841 C A LILRA1 Missense_Mutation p.F382L 0.07 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 19 57326073 57326073 A C PEG3 Missense_Mutation p.L1246R 0.45 tolerated(0.36) benign(0.296) TCGA-V5-A7RB-01 19 57984813 57984813 A G ZNF772 Silent p.P433P 0.36 TCGA-V5-A7RB-01 19 58370470 58370470 C T ZNF587 Silent p.H230H 0.26 TCGA-V5-A7RB-01 19 6760892 6760892 T C SH2D3A Missense_Mutation p.H59R 0.15 deleterious(0) probably_damaging(0.98) TCGA-V5-A7RB-01 19 8155007 8155007 C T FBN3 Missense_Mutation p.E2054K 0.40 deleterious(0.01) probably_damaging(0.978) TCGA-V5-A7RB-01 19 8595219 8595219 C T MYO1F Missense_Mutation p.R730Q 0.28 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 19 9073601 9073601 A C MUC16 Silent p.T4615T 0.46 TCGA-V5-A7RB-01 1 104086028 104086028 A C RNPC3 Missense_Mutation p.K335T 0.14 tolerated(0.49) benign(0.016) TCGA-V5-A7RB-01 1 116206711 116206711 C T VANGL1 Missense_Mutation p.R212W 0.17 deleterious(0) possibly_damaging(0.906) TCGA-V5-A7RB-01 1 12409301 12409301 C T VPS13D Missense_Mutation p.R3101W 0.11 probably_damaging(0.93) TCGA-V5-A7RB-01 1 1250292 1250292 G A CPSF3L Missense_Mutation p.T211M 0.30 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 1 13940876 13940876 T A PDPN Missense_Mutation p.V227E 0.20 deleterious(0) probably_damaging(0.962) TCGA-V5-A7RB-01 1 13940885 13940885 G A PDPN Missense_Mutation p.R230Q 0.20 deleterious(0.03) probably_damaging(0.996) TCGA-V5-A7RB-01 1 1417530 1417530 G A ATAD3B Missense_Mutation p.R176Q 0.29 tolerated(0.22) possibly_damaging(0.464) TCGA-V5-A7RB-01 1 144911890 144911890 G A PDE4DIP Missense_Mutation p.S740F 0.15 deleterious(0.03) possibly_damaging(0.8) TCGA-V5-A7RB-01 1 150776494 150776494 C T CTSK Intron 0.14 TCGA-V5-A7RB-01 1 152637101 152637101 C G LCE2D 3'UTR 0.23 TCGA-V5-A7RB-01 1 152882956 152882956 A G IVL Missense_Mutation p.Q228R 0.20 deleterious(0.01) unknown(0) TCGA-V5-A7RB-01 1 153655852 153655852 G A NPR1 Missense_Mutation p.V422I 0.29 tolerated(0.76) benign(0.011) TCGA-V5-A7RB-01 1 155784178 155784178 T G GON4L Missense_Mutation p.R408S 0.30 deleterious(0) benign(0.402) TCGA-V5-A7RB-01 1 158227471 158227471 T C CD1A Silent p.C325C 0.18 TCGA-V5-A7RB-01 1 158227593 158227593 T G CD1A 3'UTR 0.33 TCGA-V5-A7RB-01 1 158262414 158262414 C G CD1C Silent p.R213R 0.40 TCGA-V5-A7RB-01 1 158435617 158435617 A C OR10K1 Missense_Mutation p.K89T 0.18 tolerated(0.55) possibly_damaging(0.557) TCGA-V5-A7RB-01 1 179079868 179079868 T C ABL2 Intron 0.28 TCGA-V5-A7RB-01 1 186081978 186081978 G A HMCN1 Missense_Mutation p.R3675K 0.30 benign(0.36) TCGA-V5-A7RB-01 1 187610583 187610583 C G ERVMER61-1 RNA 0.25 TCGA-V5-A7RB-01 1 197704897 197704897 G A DENND1B Intron 0.33 TCGA-V5-A7RB-01 1 2117606 2117606 G A C1orf86 3'Flank 0.22 TCGA-V5-A7RB-01 1 224345429 224345429 G C FBXO28 Missense_Mutation p.R363P 0.27 deleterious_low_confidence(0.01) unknown(0) TCGA-V5-A7RB-01 1 236433186 236433186 G T ERO1LB Missense_Mutation p.R71S 0.24 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 1 242271125 242271125 A G PLD5 Silent p.L363L 0.32 TCGA-V5-A7RB-01 1 243349275 243349275 T G CEP170 Missense_Mutation p.T458P 0.17 tolerated(0.08) benign(0.042) TCGA-V5-A7RB-01 1 247694864 247694864 A G OR2C3 Missense_Mutation p.L317P 0.26 tolerated_low_confidence(0.07) benign(0) TCGA-V5-A7RB-01 1 32221809 32221809 C T BAI2 Missense_Mutation p.R210H 0.60 tolerated(0.1) benign(0.19) TCGA-V5-A7RB-01 1 36031966 36031966 G C NCDN 3'UTR 0.33 TCGA-V5-A7RB-01 1 36938264 36938264 G A CSF3R Missense_Mutation p.R233W 0.09 tolerated(0.15) benign(0.003) TCGA-V5-A7RB-01 1 51735793 51735793 C T RNF11 Missense_Mutation p.R97W 0.32 tolerated(0.1) benign(0.002) TCGA-V5-A7RB-01 1 55622627 55622627 C G USP24 Missense_Mutation p.K480N 0.16 deleterious(0.01) benign(0.384) TCGA-V5-A7RB-01 1 60299159 60299159 G A HOOK1 Missense_Mutation p.R119K 0.34 tolerated(0.54) benign(0.25) TCGA-V5-A7RB-01 1 72076804 72076804 T G NEGR1 Missense_Mutation p.K231N 0.38 deleterious(0) possibly_damaging(0.45) TCGA-V5-A7RB-01 1 89318841 89318841 C G GTF2B 3'UTR 0.26 TCGA-V5-A7RB-01 20 23064577 23064577 C T CD93 3'UTR 0.13 TCGA-V5-A7RB-01 20 25457438 25457438 G A NINL Missense_Mutation p.P830L 0.26 tolerated(1) benign(0.001) TCGA-V5-A7RB-01 20 34568440 34568440 G T CNBD2 Missense_Mutation p.E101D 0.68 tolerated(0.25) benign(0.059) TCGA-V5-A7RB-01 20 45170209 45170209 C T OCSTAMP Missense_Mutation p.V469I 0.70 tolerated_low_confidence(0.52) benign(0.001) TCGA-V5-A7RB-01 20 45923446 45923446 C A ZMYND8 Silent p.L177L 0.10 TCGA-V5-A7RB-01 21 41033638 41033638 T G B3GALT5 3'UTR 0.55 TCGA-V5-A7RB-01 22 16277579 16277579 T G POTEH Intron 0.57 TCGA-V5-A7RB-01 22 20937531 20937531 G A MED15 Missense_Mutation p.E557K 0.58 deleterious(0) probably_damaging(0.913) TCGA-V5-A7RB-01 22 21414754 21414754 G T AC002472.13 Silent p.V371V 0.47 TCGA-V5-A7RB-01 2 108443272 108443272 G C RGPD4 5'Flank 0.41 TCGA-V5-A7RB-01 2 132919230 132919230 G A ANKRD30BL Missense_Mutation p.R17C 0.16 deleterious(0.01) benign(0.262) TCGA-V5-A7RB-01 2 135743599 135743599 C T MAP3K19 Missense_Mutation p.G948D 0.09 tolerated(0.96) benign(0.001) TCGA-V5-A7RB-01 2 165953850 165953850 C A SCN3A Missense_Mutation p.C1384F 0.06 deleterious(0) probably_damaging(0.946) TCGA-V5-A7RB-01 2 166850801 166850801 C T SCN1A Silent p.V1569V 0.29 TCGA-V5-A7RB-01 2 179419249 179419249 G A TTN Nonsense_Mutation p.R29609* 0.22 TCGA-V5-A7RB-01 2 179472135 179472135 T G TTN Missense_Mutation p.E17760D 0.29 TCGA-V5-A7RB-01 2 179476272 179476272 C T TTN Missense_Mutation p.G16895D 0.19 TCGA-V5-A7RB-01 2 179604931 179604931 T C TTN Silent p.E4343E 0.30 TCGA-V5-A7RB-01 2 179621097 179621097 T G TTN Missense_Mutation p.E3702D 0.43 TCGA-V5-A7RB-01 2 179631332 179631332 T C TTN Missense_Mutation p.E3160G 0.62 TCGA-V5-A7RB-01 2 181927981 181927981 T C UBE2E3 3'UTR 0.14 TCGA-V5-A7RB-01 2 198257072 198257072 A G SF3B1 Silent p.D1290D 0.32 TCGA-V5-A7RB-01 2 198260982 198260982 T C SF3B1 Missense_Mutation p.T1113A 0.34 tolerated(0.51) possibly_damaging(0.523) TCGA-V5-A7RB-01 2 210597563 210597563 T G MAP2 3'UTR 0.31 TCGA-V5-A7RB-01 2 210885576 210885576 C T RPE 3'UTR 0.28 TCGA-V5-A7RB-01 2 216967308 216967308 A T TMEM169 3'UTR 0.29 TCGA-V5-A7RB-01 2 219520935 219520935 A C ZNF142 Missense_Mutation p.M73R 0.29 tolerated(0.19) benign(0.241) TCGA-V5-A7RB-01 2 226265641 226265641 T C NYAP2 5'UTR 0.24 TCGA-V5-A7RB-01 2 235950358 235950358 G C SH3BP4 Silent p.V315V 0.36 TCGA-V5-A7RB-01 2 239007705 239007705 G A SCLY 3'UTR 0.53 TCGA-V5-A7RB-01 2 30756135 30756135 G C LCLAT1 Missense_Mutation p.E145Q 0.05 tolerated(0.15) benign(0.082) TCGA-V5-A7RB-01 2 31189139 31189139 A C GALNT14 Missense_Mutation p.L115R 0.52 deleterious(0) probably_damaging(0.998) TCGA-V5-A7RB-01 2 37306297 37306297 T C HEATR5B Missense_Mutation p.K102E 0.28 deleterious(0) probably_damaging(0.987) TCGA-V5-A7RB-01 2 43450678 43450678 T C ZFP36L2 3'UTR 0.70 TCGA-V5-A7RB-01 2 44436549 44436549 C T PPM1B Intron 0.53 TCGA-V5-A7RB-01 2 79253844 79253844 G C REG3G Missense_Mutation p.E28Q 0.22 tolerated(0.06) benign(0.011) TCGA-V5-A7RB-01 2 84931260 84931260 G C DNAH6 Missense_Mutation p.D2767H 0.06 deleterious(0.01) probably_damaging(0.95) TCGA-V5-A7RB-01 2 87001610 87001610 C G RMND5A 3'UTR 0.27 TCGA-V5-A7RB-01 3 107097242 107097242 G A CCDC54 Missense_Mutation p.E270K 0.30 deleterious(0.05) benign(0.067) TCGA-V5-A7RB-01 3 12546688 12546688 T A TSEN2 Missense_Mutation p.N289K 0.32 deleterious(0.01) probably_damaging(0.995) TCGA-V5-A7RB-01 3 129291689 129291689 T G PLXND1 Missense_Mutation p.Y978S 0.25 deleterious(0) possibly_damaging(0.454) TCGA-V5-A7RB-01 3 132071602 132071602 T A ACPP Missense_Mutation p.D301E 0.34 tolerated(0.06) benign(0.001) TCGA-V5-A7RB-01 3 139171929 139171929 T G RBP2 3'UTR 0.26 TCGA-V5-A7RB-01 3 142066091 142066091 C A XRN1 Missense_Mutation p.D1288Y 0.33 deleterious_low_confidence(0.01) benign(0.089) TCGA-V5-A7RB-01 3 172117711 172117711 A T FNDC3B 3'UTR 0.26 TCGA-V5-A7RB-01 3 194117361 194117361 G A GP5 Nonsense_Mutation p.R551* 0.08 TCGA-V5-A7RB-01 3 38647455 38647455 T A SCN5A Missense_Mutation p.K442M 0.33 deleterious(0) probably_damaging(0.914) TCGA-V5-A7RB-01 3 41268766 41268766 A C CTNNB1 Missense_Mutation p.K335T 0.20 deleterious(0) probably_damaging(0.973) TCGA-V5-A7RB-01 3 46542088 46542088 T C RTP3 Missense_Mutation p.L133S 0.30 tolerated(0.78) benign(0.03) TCGA-V5-A7RB-01 3 48694699 48694699 C T CELSR3 Silent p.V1277V 0.25 TCGA-V5-A7RB-01 3 93733819 93733819 T G STX19 Missense_Mutation p.K99Q 0.36 deleterious(0.03) probably_damaging(0.993) TCGA-V5-A7RB-01 4 134112419 134112419 T G PCDH10 3'UTR 0.22 TCGA-V5-A7RB-01 4 138451539 138451539 G A PCDH18 Silent p.D568D 0.27 TCGA-V5-A7RB-01 4 145567177 145567177 G A HHIP 5'UTR 0.31 TCGA-V5-A7RB-01 4 153245464 153245464 G A FBXW7 Missense_Mutation p.T576M 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-V5-A7RB-01 4 155243619 155243619 T G DCHS2 Missense_Mutation p.K892T 0.32 deleterious(0.02) probably_damaging(0.971) TCGA-V5-A7RB-01 4 155254348 155254348 T G DCHS2 Missense_Mutation p.E505D 0.25 tolerated(0.1) benign(0.219) TCGA-V5-A7RB-01 4 165891052 165891052 A C TRIM61 Missense_Mutation p.F35V 0.08 deleterious(0.01) possibly_damaging(0.896) TCGA-V5-A7RB-01 4 169391933 169391933 G C DDX60L Intron 0.25 TCGA-V5-A7RB-01 4 170476957 170476957 T A NEK1 Silent p.A492A 0.07 TCGA-V5-A7RB-01 4 183713770 183713770 T C TENM3 Missense_Mutation p.L1982P 0.16 deleterious(0) possibly_damaging(0.902) TCGA-V5-A7RB-01 4 184932004 184932004 G A STOX2 Silent p.V671V 0.35 TCGA-V5-A7RB-01 4 187178503 187178503 G T KLKB1 Missense_Mutation p.G570V 0.28 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 4 38126581 38126581 A T TBC1D1 Splice_Site p.X988_splice 0.39 TCGA-V5-A7RB-01 4 5642461 5642461 C A EVC2 Missense_Mutation p.S417I 0.29 deleterious(0.01) benign(0.446) TCGA-V5-A7RB-01 4 57889570 57889570 G A POLR2B Missense_Mutation p.D864N 0.30 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 4 96256651 96256651 T C UNC5C Missense_Mutation p.S86G 0.17 deleterious(0.04) benign(0.146) TCGA-V5-A7RB-01 5 1032294 1032294 G C NKD2 Missense_Mutation p.G57R 0.34 tolerated(0.13) benign(0.198) TCGA-V5-A7RB-01 5 107196318 107196318 A G FBXL17 3'UTR 0.36 TCGA-V5-A7RB-01 5 112154941 112154941 C A APC Silent p.I404I 0.29 TCGA-V5-A7RB-01 5 112351787 112351787 A T DCP2 3'UTR 0.13 TCGA-V5-A7RB-01 5 127647076 127647076 C A FBN2 Nonsense_Mutation p.G1664* 0.30 TCGA-V5-A7RB-01 5 134192970 134192972 TGT - C5orf24 3'UTR 0.41 TCGA-V5-A7RB-01 5 137476531 137476531 C G BRD8 Missense_Mutation p.G1160R 0.34 deleterious(0) possibly_damaging(0.801) TCGA-V5-A7RB-01 5 137593535 137593535 C T GFRA3 Missense_Mutation p.R193H 0.26 deleterious(0.03) benign(0.142) TCGA-V5-A7RB-01 5 140216110 140216110 C T PCDHA7 Silent p.T714T 0.31 TCGA-V5-A7RB-01 5 140580728 140580728 C G PCDHB11 Missense_Mutation p.R461G 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.527) TCGA-V5-A7RB-01 5 153432941 153432943 GAG - MFAP3 In_Frame_Del p.E254del 0.40 TCGA-V5-A7RB-01 5 161582422 161582422 A C GABRG2 3'UTR 0.25 TCGA-V5-A7RB-01 5 1633017 1633017 C T RP11-43F13.1 RNA 0.28 TCGA-V5-A7RB-01 5 167489111 167489111 A C TENM2 Missense_Mutation p.E452D 0.54 tolerated(1) benign(0.012) TCGA-V5-A7RB-01 5 167990909 167990909 C A PANK3 Missense_Mutation p.W266L 0.07 tolerated(0.6) possibly_damaging(0.555) TCGA-V5-A7RB-01 5 169423170 169423170 T C DOCK2 Splice_Site p.X1024_splice 0.21 TCGA-V5-A7RB-01 5 173043312 173043312 G C BOD1 Missense_Mutation p.S43W 0.29 deleterious(0) probably_damaging(0.957) TCGA-V5-A7RB-01 5 19747272 19747272 A C CDH18 Missense_Mutation p.F101C 0.22 deleterious(0) probably_damaging(1) TCGA-V5-A7RB-01 5 5034556 5034556 G A LINC01020 RNA 0.07 TCGA-V5-A7RB-01 5 5182272 5182272 A G ADAMTS16 Missense_Mutation p.K206R 0.29 tolerated(0.1) benign(0.224) TCGA-V5-A7RB-01 5 5235215 5235215 T G ADAMTS16 Missense_Mutation p.F647V 0.26 deleterious(0) probably_damaging(0.928) TCGA-V5-A7RB-01 5 94024337 94024337 A G ANKRD32 Missense_Mutation p.T750A 0.34 tolerated(0.9) benign(0) TCGA-V5-A7RB-01 6 127762482 127762482 A C KIAA0408 3'Flank 0.56 TCGA-V5-A7RB-01 6 132645151 132645151 C G MOXD1 Missense_Mutation p.W344C 0.25 deleterious(0.05) probably_damaging(1) TCGA-V5-A7RB-01 6 150023181 150023181 G A LATS1 Missense_Mutation p.R28W 0.45 deleterious_low_confidence(0) possibly_damaging(0.708) TCGA-V5-A7RB-01 6 159654479 159654479 G T FNDC1 Missense_Mutation p.A979S 0.16 tolerated_low_confidence(0.14) unknown(0) TCGA-V5-A7RB-01 6 165848801 165848801 G A PDE10A Missense_Mutation p.P154L 0.50 deleterious(0.01) probably_damaging(0.995) TCGA-V5-A7RB-01 6 28121231 28121231 A T ZKSCAN8 Silent p.T391T 0.33 TCGA-V5-A7RB-01 6 28227240 28227240 C T NKAPL Nonsense_Mutation p.Q31* 0.22 TCGA-V5-A7RB-01 6 29974679 29974679 G A ZNRD1-AS1 Intron 0.22 TCGA-V5-A7RB-01 6 401596 401596 G C IRF4 Missense_Mutation p.K306N 0.31 tolerated(0.07) benign(0.135) TCGA-V5-A7RB-01 6 46107601 46107601 A G ENPP4 Missense_Mutation p.Y94C 0.28 deleterious(0) probably_damaging(0.981) TCGA-V5-A7RB-01 6 62995778 62995778 G A KHDRBS2 Missense_Mutation p.R26C 0.23 deleterious(0) probably_damaging(0.99) TCGA-V5-A7RB-01 7 128531839 128531839 G A KCP RNA 0.42 TCGA-V5-A7RB-01 7 140051914 140051914 A - SLC37A3 Frame_Shift_Del p.F217Lfs*37 0.21 TCGA-V5-A7RB-01 7 14188008 14188008 A G DGKB 3'UTR 0.17 TCGA-V5-A7RB-01 7 150069801 150069801 G T REPIN1 Missense_Mutation p.D548Y 0.48 deleterious(0.01) probably_damaging(0.926) TCGA-V5-A7RB-01 7 150776706 150776706 G A FASTK Missense_Mutation p.P129L 0.43 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-V5-A7RB-01 7 156786835 156786835 G T MNX1 Silent p.G32G 0.54 TCGA-V5-A7RB-01 7 30406397 30406397 A G ZNRF2 3'UTR 0.18 TCGA-V5-A7RB-01 7 37780847 37780847 C A GPR141 Silent p.V284V 0.29 TCGA-V5-A7RB-01 7 38279766 38279766 A G TRGC2 Silent p.D143D 0.24 TCGA-V5-A7RB-01 7 38402606 38402606 G A TRGV2 Silent p.Y71Y 0.33 TCGA-V5-A7RB-01 7 38857431 38857431 T G VPS41 Missense_Mutation p.T146P 0.15 deleterious(0.01) probably_damaging(0.972) TCGA-V5-A7RB-01 7 4185504 4185504 G A SDK1 Nonsense_Mutation p.W1460* 0.15 TCGA-V5-A7RB-01 7 43916873 43916873 A C URGCP Missense_Mutation p.M730R 0.07 deleterious(0) possibly_damaging(0.736) TCGA-V5-A7RB-01 7 45757358 45757358 G C ADCY1 3'UTR 0.12 TCGA-V5-A7RB-01 7 4950836 4950836 C T MMD2 Missense_Mutation p.R136H 0.42 deleterious(0.01) possibly_damaging(0.631) TCGA-V5-A7RB-01 7 51085194 51085194 A T COBL 3'UTR 0.05 TCGA-V5-A7RB-01 7 5336571 5336571 G - SLC29A4 Frame_Shift_Del p.A209Rfs*3 0.23 TCGA-V5-A7RB-01 7 5567412 5567412 G - ACTB Frame_Shift_Del p.G366Afs*16 0.34 TCGA-V5-A7RB-01 7 56149877 56149877 C T PHKG1 Missense_Mutation p.G238D 0.10 deleterious(0) probably_damaging(0.996) TCGA-V5-A7RB-01 7 57188644 57188644 G A ZNF479 Missense_Mutation p.H160Y 0.44 tolerated(0.1) benign(0.028) TCGA-V5-A7RB-01 7 63529325 63529325 C T ZNF727 Silent p.C20C 0.07 TCGA-V5-A7RB-01 7 63538876 63538876 G C ZNF727 Missense_Mutation p.K483N 0.12 tolerated(0.06) benign(0.01) TCGA-V5-A7RB-01 7 63808618 63808618 A T ZNF736 Missense_Mutation p.Q126L 0.39 deleterious(0.04) benign(0.256) TCGA-V5-A7RB-01 7 73085444 73085444 C T VPS37D Missense_Mutation p.A165V 0.25 tolerated(0.76) probably_damaging(0.983) TCGA-V5-A7RB-01 7 82387807 82387807 T G PCLO 3'UTR 0.29 TCGA-V5-A7RB-01 7 91630606 91630606 C G AKAP9 Missense_Mutation p.Q459E 0.45 benign(0.019) TCGA-V5-A7RB-01 8 102701306 102701306 G A NCALD 3'UTR 0.08 TCGA-V5-A7RB-01 8 105601095 105601095 G A LRP12 Missense_Mutation p.P11S 0.11 tolerated_low_confidence(0.35) benign(0.01) TCGA-V5-A7RB-01 8 116425068 116425068 A C TRPS1 3'UTR 0.15 TCGA-V5-A7RB-01 8 143562931 143562931 G A BAI1 Silent p.S663S 0.24 TCGA-V5-A7RB-01 8 146203030 146203030 C A ZNF252P RNA 0.67 TCGA-V5-A7RB-01 8 25287473 25287473 C G KCTD9 Missense_Mutation p.G357A 0.43 deleterious(0.01) probably_damaging(1) TCGA-V5-A7RB-01 8 41355027 41355027 G C GOLGA7 Splice_Site p.X38_splice 0.47 TCGA-V5-A7RB-01 8 56436043 56436043 T G XKR4 Missense_Mutation p.F404V 0.28 tolerated(0.07) probably_damaging(0.988) TCGA-V5-A7RB-01 8 69012064 69012064 T C PREX2 Missense_Mutation p.S901P 0.19 deleterious(0.01) benign(0.092) TCGA-V5-A7RB-01 8 75926262 75926262 A C CRISPLD1 Missense_Mutation p.N184T 0.42 tolerated(0.06) benign(0.06) TCGA-V5-A7RB-01 8 77763213 77763213 A T ZFHX4 Missense_Mutation p.K1352N 0.35 possibly_damaging(0.607) TCGA-V5-A7RB-01 8 94179057 94179057 C A C8orf87 5'UTR 0.10 TCGA-V5-A7RB-01 8 96168071 96168071 C T PLEKHF2 3'UTR 0.12 TCGA-V5-A7RB-01 8 97622904 97622904 C G SDC2 3'UTR 0.34 TCGA-V5-A7RB-01 8 97623908 97623908 G A SDC2 3'UTR 0.31 TCGA-V5-A7RB-01 9 104332505 104332505 G A GRIN3A 3'UTR 0.40 TCGA-V5-A7RB-01 9 105767695 105767695 A G CYLC2 Missense_Mutation p.K261R 0.19 deleterious(0.01) unknown(0) TCGA-V5-A7RB-01 9 107367311 107367311 G C OR13C2 Missense_Mutation p.L200V 0.33 tolerated(0.43) benign(0.059) TCGA-V5-A7RB-01 9 113173558 113173558 G A SVEP1 Missense_Mutation p.R2145W 0.21 probably_damaging(1) TCGA-V5-A7RB-01 9 115818904 115818904 G A ZFP37 Missense_Mutation p.A22V 0.31 tolerated_low_confidence(0.14) benign(0.005) TCGA-V5-A7RB-01 9 116267774 116267774 C T RGS3 Missense_Mutation p.S317F 0.34 deleterious(0.02) probably_damaging(1) TCGA-V5-A7RB-01 9 119187699 119187699 A G ASTN2 3'UTR 0.10 TCGA-V5-A7RB-01 9 126142651 126142651 C T DENND1A 3'UTR 0.07 TCGA-V5-A7RB-01 9 129598761 129598761 C T ZBTB43 3'UTR 0.09 TCGA-V5-A7RB-01 9 134135560 134135560 C T FAM78A 3'UTR 0.44 TCGA-V5-A7RB-01 9 137708901 137708901 T G COL5A1 Silent p.G1384G 0.21 TCGA-V5-A7RB-01 9 23692295 23692295 T C ELAVL2 3'UTR 0.38 TCGA-V5-A7RB-01 9 23704933 23704933 A C ELAVL2 Missense_Mutation p.L157R 0.39 deleterious(0) probably_damaging(0.999) TCGA-V5-A7RB-01 9 38398439 38398439 G A ALDH1B1 3'UTR 0.30 TCGA-V5-A7RB-01 X 101818265 101818265 G A NXF4 RNA 0.60 TCGA-V5-A7RB-01 X 110653400 110653400 C T DCX Missense_Mutation p.R157H 0.55 deleterious(0.01) probably_damaging(1) TCGA-V5-A7RB-01 X 140335763 140335763 T C SPANXC Missense_Mutation p.R61G 0.60 deleterious(0.03) possibly_damaging(0.534) TCGA-V5-A7RB-01 X 152481678 152481678 T G MAGEA1 3'UTR 0.38 TCGA-V5-A7RB-01 X 152845533 152845533 T G ATP2B3 Missense_Mutation p.F1147C 0.72 deleterious_low_confidence(0) possibly_damaging(0.645) TCGA-V5-A7RB-01 X 153677073 153677073 G C FAM50A Missense_Mutation p.Q185H 0.62 deleterious(0.01) possibly_damaging(0.897) TCGA-V5-A7RB-01 X 15543485 15543485 C A BMX Nonsense_Mutation p.S276* 0.10 TCGA-V5-A7RB-01 X 47498709 47498709 T C ELK1 Missense_Mutation p.K80R 0.48 deleterious(0) probably_damaging(0.998) TCGA-V5-A7RB-01 X 49777894 49777894 C G CLCN5 Intron 0.36 TCGA-V5-A7RB-01 X 54161520 54161520 C T FAM120C Missense_Mutation p.V454M 0.47 tolerated(0.58) benign(0.003) TCGA-V5-A7RB-01 X 66905924 66905924 C G AR Missense_Mutation p.S614C 0.60 deleterious(0) probably_damaging(0.923) TCGA-V5-A7RB-01 X 69455948 69455948 T G AWAT1 Missense_Mutation p.W72G 0.63 deleterious(0) possibly_damaging(0.62) TCGA-V5-A7RB-01 X 77911790 77911790 A C ZCCHC5 3'UTR 0.53 TCGA-V5-A7RB-01 Y 15448174 15448174 A C UTY Missense_Mutation p.N604K 0.31 deleterious_low_confidence(0.04) benign(0.15) TCGA-V5-A7RB-01 Y 4972548 4972548 A C PCDH11Y 3'UTR 0.63 TCGA-V5-A7RC-01 10 108459009 108459009 C G SORCS1 Missense_Mutation p.R459T 0.40 deleterious(0.01) possibly_damaging(0.541) TCGA-V5-A7RC-01 10 119768209 119768209 T C RAB11FIP2 3'UTR 0.29 TCGA-V5-A7RC-01 10 135011900 135011900 C A KNDC1 Missense_Mutation p.Q656K 0.27 tolerated(0.22) benign(0.017) TCGA-V5-A7RC-01 10 27486034 27486034 C G ACBD5 3'UTR 0.10 TCGA-V5-A7RC-01 10 43650484 43650484 C T CSGALNACT2 5'UTR 0.48 TCGA-V5-A7RC-01 10 5568054 5568054 C A CALML3 3'UTR 0.55 TCGA-V5-A7RC-01 10 8116088 8116088 T C GATA3 3'UTR 0.08 TCGA-V5-A7RC-01 11 122685091 122685091 A G UBASH3B 3'UTR 0.55 TCGA-V5-A7RC-01 11 5290883 5290883 G T HBE1 Missense_Mutation p.T39N 0.46 deleterious(0) possibly_damaging(0.739) TCGA-V5-A7RC-01 11 57948685 57948685 A G OR9Q1 3'UTR 0.28 TCGA-V5-A7RC-01 11 5968694 5968694 C A OR56A3 Missense_Mutation p.L40I 0.20 tolerated(0.24) benign(0.014) TCGA-V5-A7RC-01 11 61048524 61048524 C A VWCE Missense_Mutation p.R324L 0.06 tolerated(0.38) benign(0.001) TCGA-V5-A7RC-01 11 62371469 62371469 T C EML3 Missense_Mutation p.I706V 0.25 tolerated(0.25) probably_damaging(0.996) TCGA-V5-A7RC-01 11 73744881 73744881 T C C2CD3 3'Flank 0.40 TCGA-V5-A7RC-01 11 92086682 92086682 C G FAT3 Missense_Mutation p.H468Q 0.17 possibly_damaging(0.63) TCGA-V5-A7RC-01 12 11061603 11061603 G A TAS2R13 Missense_Mutation p.L99F 0.31 tolerated(0.27) benign(0.317) TCGA-V5-A7RC-01 12 23685997 23685999 ATC - SOX5 3'UTR 0.44 TCGA-V5-A7RC-01 12 25362207 25362207 C G LYRM5 3'Flank 0.42 TCGA-V5-A7RC-01 12 29596294 29596294 C A OVCH1 Missense_Mutation p.A1053S 0.24 deleterious(0.04) benign(0.025) TCGA-V5-A7RC-01 12 4598576 4598576 G A C12orf4 3'UTR 0.16 TCGA-V5-A7RC-01 12 57114751 57114752 AG - NACA Frame_Shift_Del p.L188* 0.29 TCGA-V5-A7RC-01 12 69656282 69656283 - CGTGACCGAGAC CPSF6 In_Frame_Ins p.D537_R540dup 0.55 TCGA-V5-A7RC-01 12 77243230 77243230 G A ZDHHC17 Silent p.T580T 0.19 TCGA-V5-A7RC-01 12 77259983 77259983 C T CSRP2 Missense_Mutation p.A20T 0.11 deleterious(0.02) possibly_damaging(0.711) TCGA-V5-A7RC-01 12 81101624 81101624 C A MYF6 Silent p.S42S 0.17 TCGA-V5-A7RC-01 12 99201655 99201655 T C ANKS1B Intron 0.18 TCGA-V5-A7RC-01 13 95131328 95131328 C T DCT Missense_Mutation p.C61Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-V5-A7RC-01 13 99127553 99127553 T C STK24 Silent p.K142K 0.28 TCGA-V5-A7RC-01 14 103450049 103450049 C T CDC42BPB Silent p.P245P 0.33 TCGA-V5-A7RC-01 14 23790583 23790583 G T PABPN1 5'UTR 0.63 TCGA-V5-A7RC-01 14 45606438 45606438 T C FANCM Silent p.Y225Y 0.73 TCGA-V5-A7RC-01 14 56111086 56111086 A T KTN1 Intron 0.57 TCGA-V5-A7RC-01 14 74726335 74726335 A G VSX2 Missense_Mutation p.R204G 0.17 deleterious(0) probably_damaging(1) TCGA-V5-A7RC-01 14 75553865 75553865 C T NEK9 Silent p.A891A 0.26 TCGA-V5-A7RC-01 14 77491597 77491597 T C IRF2BPL 3'UTR 0.57 TCGA-V5-A7RC-01 14 80329058 80329058 G T NRXN3 3'Flank 0.31 TCGA-V5-A7RC-01 15 100341320 100341320 C T DNM1P46 RNA 0.15 TCGA-V5-A7RC-01 15 74922200 74922200 C T CLK3 Silent p.H631H 0.36 TCGA-V5-A7RC-01 16 24231142 24231142 T C PRKCB 3'UTR 0.40 TCGA-V5-A7RC-01 16 24581686 24581686 A G RBBP6 Missense_Mutation p.I1225M 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-V5-A7RC-01 16 30581404 30581404 T C ZNF688 Missense_Mutation p.R222G 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-V5-A7RC-01 16 30680881 30680881 T C FBRS Missense_Mutation p.L953P 0.08 unknown(0) TCGA-V5-A7RC-01 16 30982838 30982838 C T SETD1A Silent p.S1052S 0.15 TCGA-V5-A7RC-01 16 30982839 30982839 T G SETD1A Missense_Mutation p.S1053A 0.15 unknown(0) TCGA-V5-A7RC-01 16 30982840 30982840 C A SETD1A Nonsense_Mutation p.S1053* 0.16 TCGA-V5-A7RC-01 16 31766875 31766875 A T ZNF720 Intron 0.48 TCGA-V5-A7RC-01 16 34712278 34712278 C A RP11-80F22.9 RNA 0.19 TCGA-V5-A7RC-01 16 70502787 70502787 C T FUK Silent p.A233A 0.16 TCGA-V5-A7RC-01 16 89167129 89167129 T C ACSF3 Missense_Mutation p.C14R 0.33 tolerated_low_confidence(0.38) benign(0.001) TCGA-V5-A7RC-01 17 15522728 15522728 G T CDRT1 Silent p.V33V 0.30 TCGA-V5-A7RC-01 17 18219576 18219576 T - SMCR8 Frame_Shift_Del p.I158Tfs*26 0.21 TCGA-V5-A7RC-01 17 18414580 18414580 G A USP32P2 RNA 0.17 TCGA-V5-A7RC-01 17 27211278 27211278 C T FLOT2 Missense_Mutation p.E63K 0.16 tolerated(0.34) benign(0.065) TCGA-V5-A7RC-01 17 33520817 33520817 G A SLC35G3 Silent p.I170I 0.39 TCGA-V5-A7RC-01 17 40961790 40961790 T C CNTD1 3'UTR 0.73 TCGA-V5-A7RC-01 17 4841060 4841060 G A SLC25A11 Silent p.Y307Y 0.74 TCGA-V5-A7RC-01 17 67183913 67183913 T C ABCA10 Missense_Mutation p.S747G 0.35 tolerated(0.47) benign(0.012) TCGA-V5-A7RC-01 17 7577018 7577018 C T TP53 Splice_Site p.X307_splice 0.64 TCGA-V5-A7RC-01 17 7661923 7661923 G T DNAH2 Missense_Mutation p.G721V 0.39 probably_damaging(0.987) TCGA-V5-A7RC-01 18 12496015 12496015 T C SPIRE1 Silent p.P353P 0.12 TCGA-V5-A7RC-01 18 45394822 45394822 G C SMAD2 Missense_Mutation p.P176R 0.39 deleterious(0.01) possibly_damaging(0.56) TCGA-V5-A7RC-01 18 61305185 61305185 A G SERPINB4 Missense_Mutation p.L314P 0.22 deleterious(0.02) probably_damaging(0.994) TCGA-V5-A7RC-01 18 67508990 67508990 G A DOK6 3'UTR 0.41 TCGA-V5-A7RC-01 18 76856506 76856506 G A ATP9B Silent p.L50L 0.14 TCGA-V5-A7RC-01 19 11617015 11617015 T A ECSIT Missense_Mutation p.Q427L 0.22 deleterious_low_confidence(0.02) benign(0.058) TCGA-V5-A7RC-01 19 1398805 1398805 G A GAMT Missense_Mutation p.P227L 0.51 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-V5-A7RC-01 19 15291625 15291625 C T NOTCH3 Nonsense_Mutation p.W1003* 0.32 TCGA-V5-A7RC-01 19 34263698 34263698 C T CHST8 Silent p.C335C 0.55 TCGA-V5-A7RC-01 19 38103282 38103282 T A ZNF540 Missense_Mutation p.S367R 0.20 tolerated(0.33) benign(0.083) TCGA-V5-A7RC-01 19 38376426 38376426 T C WDR87 Missense_Mutation p.S2590G 0.32 unknown(0) TCGA-V5-A7RC-01 19 39212306 39212306 G A ACTN4 Missense_Mutation p.A474T 0.08 tolerated(0.07) probably_damaging(0.988) TCGA-V5-A7RC-01 19 41247641 41247642 - T C19orf54 3'UTR 0.26 TCGA-V5-A7RC-01 19 51020952 51020952 T C LRRC4B Missense_Mutation p.H673R 0.29 tolerated_low_confidence(0.16) benign(0.076) TCGA-V5-A7RC-01 19 51645657 51645658 - G SIGLEC7 Frame_Shift_Ins p.R13Efs*10 0.29 TCGA-V5-A7RC-01 19 629696 629696 C G POLRMT Missense_Mutation p.Q222H 0.15 tolerated(0.23) benign(0.016) TCGA-V5-A7RC-01 19 9076812 9076813 - TGG MUC16 In_Frame_Ins p.T3544dup 0.18 TCGA-V5-A7RC-01 1 118579442 118579443 - T SPAG17 Frame_Shift_Ins p.N1128Kfs*20 0.15 TCGA-V5-A7RC-01 1 149931714 149931714 G A OTUD7B Missense_Mutation p.S245L 0.47 deleterious(0.01) benign(0.11) TCGA-V5-A7RC-01 1 152659480 152659480 G C LCE2B Missense_Mutation p.G54A 0.33 tolerated_low_confidence(0.77) unknown(0) TCGA-V5-A7RC-01 1 154248111 154248132 TCCAGCCCTGGATGATGCCTTT - HAX1 Frame_Shift_Del p.A260Sfs*34 0.32 TCGA-V5-A7RC-01 1 176525500 176525500 G C PAPPA2 Missense_Mutation p.L14F 0.27 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-V5-A7RC-01 1 192998780 192998780 T C UCHL5 Missense_Mutation p.N85S 0.25 tolerated(0.11) benign(0.027) TCGA-V5-A7RC-01 1 237947387 237947387 C G RYR2 Silent p.V4125V 0.38 TCGA-V5-A7RC-01 1 240555817 240555817 T C FMN2 Missense_Mutation p.I1622T 0.40 benign(0.127) TCGA-V5-A7RC-01 1 33149975 33149975 C T SYNC Silent p.L414L 0.31 TCGA-V5-A7RC-01 1 38261479 38261479 G A MANEAL Silent p.V207V 0.08 TCGA-V5-A7RC-01 1 40544257 40544257 G C PPT1 Missense_Mutation p.S234C 0.90 deleterious(0) possibly_damaging(0.63) TCGA-V5-A7RC-01 1 43814638 43814638 C G MPL Missense_Mutation p.S478W 0.07 deleterious(0) probably_damaging(0.987) TCGA-V5-A7RC-01 1 45115560 45115560 G A RNF220 Silent p.S520S 0.39 TCGA-V5-A7RC-01 1 51820470 51820470 T A EPS15 3'UTR 0.20 TCGA-V5-A7RC-01 1 85648545 85648546 - A SYDE2 Frame_Shift_Ins p.L594Sfs*2 0.16 TCGA-V5-A7RC-01 20 20021343 20021343 G A CRNKL1 Missense_Mutation p.A592V 0.34 deleterious(0.02) possibly_damaging(0.502) TCGA-V5-A7RC-01 20 44699150 44699150 G T NCOA5 Silent p.R22R 0.31 TCGA-V5-A7RC-01 22 36902124 36902124 G T FOXRED2 Missense_Mutation p.R116S 0.23 tolerated(0.47) benign(0.026) TCGA-V5-A7RC-01 2 10580959 10580959 G - ODC1 Frame_Shift_Del p.P426Hfs*4 0.12 TCGA-V5-A7RC-01 2 112630660 112630660 A G ANAPC1 Intron 0.30 TCGA-V5-A7RC-01 2 120366079 120366079 C A PCDP1 Missense_Mutation p.Q379K 0.12 deleterious(0.01) possibly_damaging(0.721) TCGA-V5-A7RC-01 2 130834673 130834673 A G POTEF Missense_Mutation p.V627A 0.35 tolerated_low_confidence(1) benign(0.001) TCGA-V5-A7RC-01 2 130910744 130910744 T C SMPD4 Missense_Mutation p.I715V 0.33 tolerated(0.24) benign(0.004) TCGA-V5-A7RC-01 2 179445305 179445305 T G TTN Missense_Mutation p.L22267F 0.35 TCGA-V5-A7RC-01 2 179641846 179641846 T C TTN Intron 0.18 TCGA-V5-A7RC-01 2 187542313 187542313 A G ITGAV 3'UTR 0.62 TCGA-V5-A7RC-01 2 20449661 20449661 C G PUM2 3'UTR 0.17 TCGA-V5-A7RC-01 2 213872143 213872143 T C IKZF2 Missense_Mutation p.S508G 0.26 deleterious(0) benign(0.254) TCGA-V5-A7RC-01 2 219505483 219505483 G A ZNF142 Missense_Mutation p.R1500W 0.13 deleterious(0) possibly_damaging(0.898) TCGA-V5-A7RC-01 2 227600362 227600362 G C IRS1 3'UTR 0.16 TCGA-V5-A7RC-01 2 46844418 46844418 A G CRIPT 5'UTR 0.30 TCGA-V5-A7RC-01 2 66775122 66775122 G T MEIS1 Silent p.T312T 0.45 TCGA-V5-A7RC-01 2 67626404 67626404 G - ETAA1 Frame_Shift_Del p.N110Ifs*4 0.27 TCGA-V5-A7RC-01 2 98351150 98351150 C A ZAP70 Missense_Mutation p.R353S 0.06 deleterious(0.04) possibly_damaging(0.698) TCGA-V5-A7RC-01 3 108363103 108363103 T C DZIP3 Missense_Mutation p.F412L 0.16 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-V5-A7RC-01 3 126748339 126748339 C T PLXNA1 Silent p.I1610I 0.11 TCGA-V5-A7RC-01 3 129033894 129033894 G C H1FX 3'UTR 0.11 TCGA-V5-A7RC-01 3 147120551 147120551 G A ZIC4 Nonsense_Mutation p.R62* 0.11 TCGA-V5-A7RC-01 3 160149603 160149603 A G SMC4 Missense_Mutation p.Y1096C 0.77 deleterious(0) probably_damaging(0.994) TCGA-V5-A7RC-01 3 169866908 169866908 G A PHC3 Missense_Mutation p.A180V 0.69 deleterious(0) probably_damaging(0.997) TCGA-V5-A7RC-01 3 175293940 175293940 G C NAALADL2 Missense_Mutation p.V589L 0.06 tolerated(0.54) benign(0.042) TCGA-V5-A7RC-01 3 184093777 184093777 G C THPO Missense_Mutation p.L14V 0.05 tolerated(0.17) unknown(0) TCGA-V5-A7RC-01 3 195510099 195510099 A T MUC4 Silent p.P2784P 0.32 TCGA-V5-A7RC-01 3 64082740 64082740 T C PRICKLE2 3'UTR 0.62 TCGA-V5-A7RC-01 4 107237698 107237698 G C TBCK Intron 0.12 TCGA-V5-A7RC-01 4 155505138 155505138 A C FGA 3'UTR 0.16 TCGA-V5-A7RC-01 4 187541543 187541545 ACA - FAT1 In_Frame_Del p.V2067del 0.42 TCGA-V5-A7RC-01 4 46252490 46252490 G T GABRA2 Missense_Mutation p.N397K 0.16 tolerated(0.91) benign(0.006) TCGA-V5-A7RC-01 4 47163459 47163459 C A GABRB1 Missense_Mutation p.P145H 0.11 tolerated(0.1) probably_damaging(0.951) TCGA-V5-A7RC-01 4 7008436 7008436 C T TBC1D14 Missense_Mutation p.L477F 0.29 deleterious(0.01) probably_damaging(0.973) TCGA-V5-A7RC-01 4 73941514 73941514 T C ANKRD17 3'UTR 0.13 TCGA-V5-A7RC-01 4 77700367 77700367 C T SHROOM3 3'UTR 0.42 TCGA-V5-A7RC-01 4 83351916 83351916 G C ENOPH1 5'UTR 0.25 TCGA-V5-A7RC-01 4 8609083 8609083 G A CPZ Silent p.V386V 0.27 TCGA-V5-A7RC-01 5 1093658 1093658 C G SLC12A7 Missense_Mutation p.R111P 0.18 tolerated(0.15) benign(0.33) TCGA-V5-A7RC-01 5 128956349 128956349 C T ADAMTS19 Missense_Mutation p.A500V 0.23 deleterious(0) possibly_damaging(0.705) TCGA-V5-A7RC-01 5 140559034 140559034 C T PCDHB8 Silent p.S473S 0.23 TCGA-V5-A7RC-01 5 140724052 140724052 G T PCDHGA3 Missense_Mutation p.R151L 0.16 deleterious_low_confidence(0.01) benign(0.412) TCGA-V5-A7RC-01 5 145719454 145719454 T C POU4F3 Missense_Mutation p.L155P 0.19 tolerated(0.24) benign(0.032) TCGA-V5-A7RC-01 5 150276160 150276160 T G ZNF300 Missense_Mutation p.Q230P 0.26 deleterious(0.02) benign(0.175) TCGA-V5-A7RC-01 5 26988213 26988213 C A CDH9 Missense_Mutation p.K76N 0.08 deleterious(0.02) probably_damaging(0.998) TCGA-V5-A7RC-01 5 44310622 44310622 C T FGF10 Silent p.E112E 0.29 TCGA-V5-A7RC-01 5 50689371 50689371 G T ISL1 Missense_Mutation p.S326I 0.33 deleterious(0) probably_damaging(0.966) TCGA-V5-A7RC-01 5 74639790 74639790 G C HMGCR Splice_Site p.X93_splice 0.23 TCGA-V5-A7RC-01 6 108232548 108232548 A C SEC63 Splice_Site p.X208_splice 0.27 TCGA-V5-A7RC-01 6 152443205 152443205 C T SYNE1 3'UTR 0.26 TCGA-V5-A7RC-01 6 163991873 163991873 G C QKI 3'UTR 0.12 TCGA-V5-A7RC-01 6 166944794 166944794 A C RPS6KA2 Missense_Mutation p.L83R 0.25 deleterious(0) probably_damaging(0.997) TCGA-V5-A7RC-01 6 27114921 27114921 G T HIST1H2AH Missense_Mutation p.G5V 0.64 deleterious_low_confidence(0) unknown(0) TCGA-V5-A7RC-01 6 36107159 36107160 - T MAPK13 3'UTR 0.88 TCGA-V5-A7RC-01 6 41738548 41738548 G A FRS3 Missense_Mutation p.P430S 0.05 tolerated(0.84) benign(0.001) TCGA-V5-A7RC-01 6 49754995 49754995 C T PGK2 5'UTR 0.11 TCGA-V5-A7RC-01 6 72960111 72960111 G C RIMS1 Missense_Mutation p.D774H 0.07 deleterious(0) probably_damaging(0.994) TCGA-V5-A7RC-01 6 88391386 88391386 A C AKIRIN2 Missense_Mutation p.S111A 0.28 tolerated(0.17) benign(0.052) TCGA-V5-A7RC-01 6 90463228 90463228 T A MDN1 Intron 0.37 TCGA-V5-A7RC-01 7 100210514 100210514 G C MOSPD3 Missense_Mutation p.V34L 0.16 deleterious(0.01) probably_damaging(0.996) TCGA-V5-A7RC-01 7 100817776 100817776 C G NAT16 Splice_Site p.X104_splice 0.05 TCGA-V5-A7RC-01 7 105207488 105207488 T C EFCAB10 Intron 0.32 TCGA-V5-A7RC-01 7 105209877 105209877 A G EFCAB10 Missense_Mutation p.I83T 0.38 deleterious(0) probably_damaging(0.988) TCGA-V5-A7RC-01 7 122774582 122774582 G T SLC13A1 Missense_Mutation p.R272S 0.30 tolerated(0.09) probably_damaging(0.979) TCGA-V5-A7RC-01 7 127637865 127637865 C - SND1 Intron 0.32 TCGA-V5-A7RC-01 7 135366322 135366322 C A SLC13A4 Missense_Mutation p.D624Y 0.31 deleterious(0.01) benign(0.11) TCGA-V5-A7RC-01 7 17832482 17832482 T G SNX13 3'UTR 0.38 TCGA-V5-A7RC-01 7 30118228 30118228 C T PLEKHA8 Missense_Mutation p.S462F 0.27 deleterious(0.01) probably_damaging(0.958) TCGA-V5-A7RC-01 7 36339167 36339167 C A EEPD1 3'UTR 0.25 TCGA-V5-A7RC-01 7 44027341 44027341 C T POLR2J4 RNA 0.31 TCGA-V5-A7RC-01 7 73960105 73960105 G A GTF2IRD1 Silent p.R598R 0.08 TCGA-V5-A7RC-01 7 82450626 82450626 T G PCLO Intron 0.12 TCGA-V5-A7RC-01 8 124359623 124359623 A G ATAD2 Missense_Mutation p.S641P 0.57 deleterious(0) possibly_damaging(0.84) TCGA-V5-A7RC-01 8 139180271 139180271 C A FAM135B Silent p.L375L 0.17 TCGA-V5-A7RC-01 8 21829470 21829470 C A XPO7 Intron 0.28 TCGA-V5-A7RC-01 8 24809971 24809971 C G CTD-2168K21.2 5'Flank 0.26 TCGA-V5-A7RC-01 8 57077272 57077272 A C PLAG1 3'UTR 0.43 TCGA-V5-A7RC-01 8 76472647 76472647 G A HNF4G Missense_Mutation p.G388R 0.31 tolerated(0.16) possibly_damaging(0.729) TCGA-V5-A7RC-01 9 37592617 37592617 C A TOMM5 5'Flank 0.42 TCGA-V5-A7RC-01 9 98224234 98224235 - A PTCH1 Frame_Shift_Ins p.M869Ifs*27 0.39 TCGA-V5-A7RC-01 X 130217914 130217914 C G ARHGAP36 Missense_Mutation p.P176A 0.72 tolerated(0.08) probably_damaging(0.984) TCGA-V5-A7RC-01 X 140994088 140994088 C A MAGEC1 Missense_Mutation p.Q300K 0.57 deleterious_low_confidence(0) unknown(0) TCGA-V5-A7RC-01 X 142718626 142718626 C A SLITRK4 Missense_Mutation p.G100V 0.41 tolerated(0.12) probably_damaging(0.999) TCGA-V5-A7RC-01 X 144905265 144905265 C G SLITRK2 Missense_Mutation p.S441C 0.33 deleterious(0.03) probably_damaging(0.95) TCGA-V5-A7RC-01 X 48379165 48379165 G C PORCN 3'UTR 0.05 TCGA-V5-A7RE-01 10 33123743 33123743 A C C10ORF68 Missense_Mutation p.E361A 0.20 deleterious(0) probably_damaging(0.953) TCGA-V5-A7RE-01 10 50872851 50872851 G T CHAT Missense_Mutation p.C669F 0.59 tolerated(0.09) probably_damaging(1) TCGA-V5-A7RE-01 10 7247841 7247841 G A SFMBT2 Silent p.D460D 0.27 TCGA-V5-A7RE-01 10 73447449 73447449 G A CDH23 Missense_Mutation p.V270I 0.46 tolerated(0.3) benign(0.026) TCGA-V5-A7RE-01 10 81850562 81850562 C T TMEM254 Silent p.G87G 0.24 TCGA-V5-A7RE-01 11 118918983 118918983 C T HYOU1 Missense_Mutation p.E785K 0.09 deleterious(0.01) possibly_damaging(0.474) TCGA-V5-A7RE-01 11 11977960 11977961 - A USP47 3'UTR 0.37 TCGA-V5-A7RE-01 11 120328461 120328461 C T ARHGEF12 Nonsense_Mutation p.R741* 0.21 TCGA-V5-A7RE-01 11 132285081 132285081 C G OPCML 3'UTR 0.10 TCGA-V5-A7RE-01 11 18127524 18127524 C G SAAL1 Missense_Mutation p.G22A 0.31 tolerated(0.7) benign(0.005) TCGA-V5-A7RE-01 11 46299687 46299687 C G CREB3L1 Missense_Mutation p.P9A 0.03 tolerated_low_confidence(0.44) benign(0.01) TCGA-V5-A7RE-01 11 46750222 46750222 G A F2 Missense_Mutation p.R436Q 0.47 tolerated(0.17) benign(0.203) TCGA-V5-A7RE-01 11 47372077 47372077 C T MYBPC3 Missense_Mutation p.G128R 0.73 tolerated(0.44) benign(0.001) TCGA-V5-A7RE-01 11 5322505 5322505 G A OR51B4 Silent p.G224G 0.68 TCGA-V5-A7RE-01 11 55587113 55587113 T C OR5D18 Missense_Mutation p.L3P 0.11 tolerated(0.05) benign(0.005) TCGA-V5-A7RE-01 11 6048776 6048776 C A OR56A1 Silent p.L53L 0.23 TCGA-V5-A7RE-01 11 63439021 63439021 G A ATL3 5'UTR 0.29 TCGA-V5-A7RE-01 11 76900423 76900423 A G MYO7A Missense_Mutation p.T1180A 0.16 deleterious(0.01) benign(0.248) TCGA-V5-A7RE-01 11 82668610 82668610 A G RP11-659G9.1 RNA 0.19 TCGA-V5-A7RE-01 11 89536873 89536873 C A TRIM49 Missense_Mutation p.C167F 0.14 tolerated(0.7) benign(0.015) TCGA-V5-A7RE-01 11 92569825 92569825 G T FAT3 Missense_Mutation p.V3394F 0.28 benign(0.02) TCGA-V5-A7RE-01 12 109523554 109523554 C T USP30 Missense_Mutation p.R458W 0.14 deleterious(0) probably_damaging(1) TCGA-V5-A7RE-01 12 110813935 110813935 C T ANAPC7 Missense_Mutation p.G516R 0.18 tolerated(0.06) benign(0.136) TCGA-V5-A7RE-01 12 117724013 117724013 T A NOS1 Missense_Mutation p.T396S 0.13 tolerated(0.15) benign(0.002) TCGA-V5-A7RE-01 12 130845767 130845767 G A PIWIL1 Missense_Mutation p.A570T 0.30 tolerated(0.06) benign(0.093) TCGA-V5-A7RE-01 12 21630863 21630863 G A RECQL Silent p.N247N 0.38 TCGA-V5-A7RE-01 12 22005335 22005335 A G ABCC9 Silent p.T870T 0.26 TCGA-V5-A7RE-01 12 28116063 28116063 C T PTHLH Intron 0.62 TCGA-V5-A7RE-01 12 30805929 30805929 A G IPO8 Silent p.F682F 0.13 TCGA-V5-A7RE-01 12 41463781 41463781 A G CNTN1 Missense_Mutation p.S1001G 0.19 tolerated_low_confidence(0.12) benign(0.153) TCGA-V5-A7RE-01 12 5154191 5154191 C T KCNA5 Missense_Mutation p.A293V 0.28 tolerated(0.43) benign(0.002) TCGA-V5-A7RE-01 12 54393908 54393908 G A HOXC9 5'UTR 0.12 TCGA-V5-A7RE-01 12 6103618 6103618 G T VWF Missense_Mutation p.S2073R 0.14 tolerated(0.09) probably_damaging(0.928) TCGA-V5-A7RE-01 12 6879610 6879610 C T PTMS 3'UTR 0.05 TCGA-V5-A7RE-01 12 93171841 93171841 A G EEA1 Missense_Mutation p.W1257R 0.52 deleterious(0) probably_damaging(0.991) TCGA-V5-A7RE-01 13 20048098 20048098 G T TPTE2 Silent p.G116G 0.22 TCGA-V5-A7RE-01 13 35731369 35731369 A G NBEA Missense_Mutation p.R936G 0.35 deleterious(0) probably_damaging(0.998) TCGA-V5-A7RE-01 13 58298998 58298998 C T PCDH17 Missense_Mutation p.P1017L 0.14 deleterious(0) benign(0.23) TCGA-V5-A7RE-01 13 60384942 60384942 C G DIAPH3 Missense_Mutation p.R1048P 0.34 deleterious(0.03) possibly_damaging(0.551) TCGA-V5-A7RE-01 13 78171713 78171713 A C SCEL Missense_Mutation p.K262N 0.60 deleterious(0) probably_damaging(0.948) TCGA-V5-A7RE-01 13 78338160 78338160 T G SLAIN1 3'Flank 0.14 TCGA-V5-A7RE-01 14 20711241 20711241 C G OR11H4 Silent p.S97S 0.08 TCGA-V5-A7RE-01 14 62207581 62207581 C T HIF1A Missense_Mutation p.P614S 0.20 tolerated(0.16) benign(0.01) TCGA-V5-A7RE-01 15 23686304 23686304 G A GOLGA6L2 Missense_Mutation p.R440W 0.47 unknown(0) TCGA-V5-A7RE-01 15 65489146 65489146 T G CILP Silent p.R1160R 0.65 TCGA-V5-A7RE-01 15 66613011 66613011 G A DIS3L Missense_Mutation p.E423K 0.36 deleterious(0) probably_damaging(0.969) TCGA-V5-A7RE-01 15 91308561 91308561 T C BLM Missense_Mutation p.C704R 0.05 deleterious(0) probably_damaging(0.993) TCGA-V5-A7RE-01 15 99504114 99504114 G A IGF1R 3'UTR 0.83 TCGA-V5-A7RE-01 16 15724221 15724221 C T KIAA0430 Missense_Mutation p.D498N 0.11 tolerated(0.1) possibly_damaging(0.634) TCGA-V5-A7RE-01 16 20451942 20451942 T C ACSM5 3'UTR 0.31 TCGA-V5-A7RE-01 16 20749250 20749250 G T THUMPD1 Silent p.L145L 0.41 TCGA-V5-A7RE-01 16 2889846 2889846 C T PRSS30P RNA 0.09 TCGA-V5-A7RE-01 16 4624733 4624733 C G C16orf96 Missense_Mutation p.I183M 0.13 tolerated(0.15) benign(0.125) TCGA-V5-A7RE-01 16 4624981 4624981 C G C16orf96 Silent p.L205L 0.10 TCGA-V5-A7RE-01 16 4625294 4625294 C G C16orf96 Silent p.V271V 0.05 TCGA-V5-A7RE-01 16 4625362 4625362 C G C16orf96 Missense_Mutation p.S294C 0.06 tolerated(0.13) probably_damaging(0.976) TCGA-V5-A7RE-01 16 4626438 4626438 T A C16orf96 Missense_Mutation p.S653T 0.11 tolerated(0.26) benign(0.294) TCGA-V5-A7RE-01 16 4626439 4626439 C G C16orf96 Missense_Mutation p.S653C 0.11 deleterious(0.01) possibly_damaging(0.843) TCGA-V5-A7RE-01 16 4626538 4626538 C A C16orf96 Missense_Mutation p.S686Y 0.07 deleterious(0) possibly_damaging(0.781) TCGA-V5-A7RE-01 16 48575682 48575683 AT - N4BP1 3'UTR 0.29 TCGA-V5-A7RE-01 16 49669664 49669664 T G ZNF423 Missense_Mutation p.E1133D 0.25 tolerated(0.52) benign(0.063) TCGA-V5-A7RE-01 16 55359028 55359028 C T IRX6 Missense_Mutation p.P9S 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-V5-A7RE-01 16 71009107 71009107 C T HYDIN Silent p.Q1568Q 0.37 TCGA-V5-A7RE-01 16 71680719 71680719 C G PHLPP2 3'UTR 0.38 TCGA-V5-A7RE-01 17 1538715 1538715 G A SCARF1 Silent p.S610S 0.08 TCGA-V5-A7RE-01 17 18167166 18167166 G C MIEF2 Missense_Mutation p.Q162H 0.29 deleterious(0.03) possibly_damaging(0.862) TCGA-V5-A7RE-01 17 19246855 19246855 C T B9D1 Intron 0.69 TCGA-V5-A7RE-01 17 26851109 26851109 G A FOXN1 Missense_Mutation p.S41N 0.86 tolerated_low_confidence(0.88) benign(0.002) TCGA-V5-A7RE-01 17 27030613 27030613 C T PROCA1 Missense_Mutation p.R325K 0.42 tolerated(0.09) benign(0.254) TCGA-V5-A7RE-01 17 27030761 27030761 C A PROCA1 Nonsense_Mutation p.E276* 0.44 TCGA-V5-A7RE-01 17 27030779 27030779 C T PROCA1 Missense_Mutation p.E270K 0.40 deleterious(0.01) possibly_damaging(0.823) TCGA-V5-A7RE-01 17 27030811 27030811 C T PROCA1 Missense_Mutation p.R259K 0.40 deleterious(0) probably_damaging(0.999) TCGA-V5-A7RE-01 17 27030923 27030923 C T PROCA1 Missense_Mutation p.D222N 0.50 tolerated(0.14) probably_damaging(0.928) TCGA-V5-A7RE-01 17 27030929 27030929 C T PROCA1 Missense_Mutation p.E220K 0.50 tolerated(0.14) benign(0.187) TCGA-V5-A7RE-01 17 27031622 27031622 C T PROCA1 Intron 0.37 TCGA-V5-A7RE-01 17 27031741 27031741 C T PROCA1 Missense_Mutation p.C71Y 0.33 deleterious(0) probably_damaging(0.986) TCGA-V5-A7RE-01 17 27031844 27031844 C G PROCA1 Missense_Mutation p.D37H 0.16 deleterious(0) probably_damaging(0.985) TCGA-V5-A7RE-01 17 38290647 38290647 C T MSL1 3'UTR 0.05 TCGA-V5-A7RE-01 17 39190514 39190514 G A KRTAP1-3 3'UTR 0.33 TCGA-V5-A7RE-01 17 39845305 39845305 G C EIF1 Missense_Mutation p.Q5H 0.66 deleterious(0.04) benign(0.001) TCGA-V5-A7RE-01 17 39969528 39969528 C A FKBP10 Nonsense_Mutation p.S81* 0.18 TCGA-V5-A7RE-01 17 39975621 39975621 C A FKBP10 Missense_Mutation p.S296Y 0.16 deleterious(0.02) probably_damaging(0.934) TCGA-V5-A7RE-01 17 39976531 39976531 C T FKBP10 Silent p.I358I 0.18 TCGA-V5-A7RE-01 17 39976532 39976532 C T FKBP10 Missense_Mutation p.P359S 0.17 deleterious(0) probably_damaging(1) TCGA-V5-A7RE-01 17 39976533 39976533 C A FKBP10 Missense_Mutation p.P359H 0.17 deleterious(0) probably_damaging(1) TCGA-V5-A7RE-01 17 39981507 39981507 G A NT5C3B 3'Flank 0.03 TCGA-V5-A7RE-01 17 39987091 39987091 C G NT5C3B Missense_Mutation p.Q122H 0.14 tolerated(0.07) benign(0.076) TCGA-V5-A7RE-01 17 40269136 40269136 C T KAT2A Missense_Mutation p.G561S 0.47 deleterious(0.01) possibly_damaging(0.902) TCGA-V5-A7RE-01 17 40275085 40275085 G A HSPB9 Missense_Mutation p.D73N 0.81 tolerated(0.17) benign(0.423) TCGA-V5-A7RE-01 17 40275105 40275105 G A HSPB9 Silent p.V79V 0.80 TCGA-V5-A7RE-01 17 66914209 66914209 C G ABCA8 Missense_Mutation p.D636H 0.42 deleterious(0) probably_damaging(0.952) TCGA-V5-A7RE-01 17 66914298 66914298 C T ABCA8 Missense_Mutation p.G606E 0.47 deleterious(0) probably_damaging(0.999) TCGA-V5-A7RE-01 17 67218671 67218671 T G ABCA10 Intron 0.24 TCGA-V5-A7RE-01 17 72436045 72436045 G A GPRC5C Missense_Mutation p.D89N 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-V5-A7RE-01 17 73608020 73608020 C T MYO15B 3'Flank 0.33 TCGA-V5-A7RE-01 17 73608073 73608073 C T MYO15B 3'Flank 0.28 TCGA-V5-A7RE-01 17 73608079 73608079 C T MYO15B 3'Flank 0.29 TCGA-V5-A7RE-01 17 7577017 7577017 A C TP53 Splice_Site p.X307_splice 0.60 TCGA-V5-A7RE-01 17 78410789 78410789 C T ENDOV 3'UTR 0.85 TCGA-V5-A7RE-01 17 80213421 80213421 C T CSNK1D Missense_Mutation p.E74K 0.31 deleterious_low_confidence(0) benign(0.403) TCGA-V5-A7RE-01 18 31226215 31226215 G C ASXL3 Missense_Mutation p.E85Q 0.51 probably_damaging(0.997) TCGA-V5-A7RE-01 18 60639886 60639887 - A PHLPP1 Frame_Shift_Ins p.T1236Nfs*38 0.35 TCGA-V5-A7RE-01 18 63477235 63477235 G T CDH7 Splice_Site p.X169_splice 0.47 TCGA-V5-A7RE-01 19 10181677 10181677 C T C3P1 RNA 0.06 TCGA-V5-A7RE-01 19 13934270 13934270 C T ZSWIM4 Missense_Mutation p.T607I 0.32 tolerated(0.07) unknown(0) TCGA-V5-A7RE-01 19 14829540 14829540 C G ZNF333 Missense_Mutation p.S467R 0.08 tolerated(0.28) possibly_damaging(0.53) TCGA-V5-A7RE-01 19 16045083 16045083 G A CYP4F11 Missense_Mutation p.R46C 0.12 tolerated(0.27) benign(0.009) TCGA-V5-A7RE-01 19 23542543 23542543 A C ZNF91 Missense_Mutation p.C1080G 0.21 deleterious(0) probably_damaging(0.994) TCGA-V5-A7RE-01 19 33167985 33167985 G A RGS9BP 3'UTR 0.21 TCGA-V5-A7RE-01 19 39798949 39798949 G A LRFN1 Missense_Mutation p.S547L 0.22 deleterious(0) probably_damaging(0.999) TCGA-V5-A7RE-01 19 44276179 44276179 C A KCNN4 Missense_Mutation p.K264N 0.20 deleterious(0) possibly_damaging(0.828) TCGA-V5-A7RE-01 19 45322680 45322680 C T BCAM Silent p.R517R 0.12 TCGA-V5-A7RE-01 19 51128486 51128486 C T SYT3 Missense_Mutation p.R547H 0.65 deleterious(0.01) probably_damaging(0.981) TCGA-V5-A7RE-01 19 53302221 53302221 T G ZNF28 3'UTR 0.39 TCGA-V5-A7RE-01 19 53472790 53472790 C - ZNF702P RNA 0.31 TCGA-V5-A7RE-01 19 9085345 9085345 G T MUC16 Missense_Mutation p.S2157Y 0.27 unknown(0) TCGA-V5-A7RE-01 1 103444294 103444294 G A COL11A1 Silent p.G908G 0.25 TCGA-V5-A7RE-01 1 113471764 113471764 C G SLC16A1 Missense_Mutation p.S56T 0.16 deleterious(0) probably_damaging(0.94) TCGA-V5-A7RE-01 1 115430251 115430252 - A SYCP1 Frame_Shift_Ins p.N401Kfs*2 0.20 TCGA-V5-A7RE-01 1 117156561 117156561 G A IGSF3 Missense_Mutation p.R220W 0.22 deleterious(0) probably_damaging(0.987) TCGA-V5-A7RE-01 1 13839807 13839807 C G LRRC38 Silent p.S94S 0.42 TCGA-V5-A7RE-01 1 152282266 152282266 C T FLG Missense_Mutation p.R1699H 0.14 possibly_damaging(0.812) TCGA-V5-A7RE-01 1 158300734 158300734 G A CD1B Silent p.S60S 0.19 TCGA-V5-A7RE-01 1 159505593 159505593 A G OR10J5 Missense_Mutation p.S69P 0.54 deleterious(0.01) benign(0.216) TCGA-V5-A7RE-01 1 173840126 173840126 G C ZBTB37 Missense_Mutation p.G255R 0.37 tolerated(0.14) benign(0.254) TCGA-V5-A7RE-01 1 182856565 182856565 A T DHX9 Missense_Mutation p.Y1270F 0.58 deleterious_low_confidence(0) unknown(0) TCGA-V5-A7RE-01 1 201866690 201866690 T C LMOD1 3'UTR 0.24 TCGA-V5-A7RE-01 1 211486260 211486260 C T RCOR3 Missense_Mutation p.A425V 0.53 tolerated(0.37) benign(0.079) TCGA-V5-A7RE-01 1 213032241 213032241 G A FLVCR1 Silent p.L149L 0.35 TCGA-V5-A7RE-01 1 228194811 228194811 C T WNT3A 5'UTR 0.27 TCGA-V5-A7RE-01 1 228646248 228646248 C G HIST3H2BB 3'UTR 0.31 TCGA-V5-A7RE-01 1 238090365 238090365 G T RP11-193H5.1 RNA 0.61 TCGA-V5-A7RE-01 1 247013637 247013637 G A AHCTF1 Silent p.L1900L 0.34 TCGA-V5-A7RE-01 1 34663156 34663156 G A C1orf94 Silent p.K217K 0.25 TCGA-V5-A7RE-01 1 3646582 3646582 G A TP73 Silent p.P405P 0.07 TCGA-V5-A7RE-01 1 40363557 40363557 G A MYCL Silent p.D224D 0.25 TCGA-V5-A7RE-01 1 53755344 53755344 C G LRP8 Missense_Mutation p.D88H 0.31 deleterious(0.04) possibly_damaging(0.89) TCGA-V5-A7RE-01 1 84835598 84835598 G A UOX RNA 0.52 TCGA-V5-A7RE-01 20 25755880 25755880 C G FAM182B Missense_Mutation p.G26R 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.694) TCGA-V5-A7RE-01 20 30381807 30381807 A C TPX2 Missense_Mutation p.K556Q 0.14 tolerated(0.12) benign(0.33) TCGA-V5-A7RE-01 20 44676707 44676707 A C SLC12A5 Silent p.P688P 0.66 TCGA-V5-A7RE-01 21 37617444 37617444 C T DOPEY2 Silent p.L1056L 0.27 TCGA-V5-A7RE-01 22 40722601 40722602 - T TNRC6B 3'UTR 0.37 TCGA-V5-A7RE-01 2 108476268 108476268 G A RGPD4 Silent p.L575L 0.43 TCGA-V5-A7RE-01 2 128038201 128038201 A T ERCC3 Missense_Mutation p.M450K 0.36 deleterious(0.04) benign(0.038) TCGA-V5-A7RE-01 2 152531850 152531850 T C NEB Missense_Mutation p.D1277G 0.07 probably_damaging(0.999) TCGA-V5-A7RE-01 2 155099226 155099226 C T GALNT13 Missense_Mutation p.T165I 0.12 tolerated(0.06) benign(0.01) TCGA-V5-A7RE-01 2 165986604 165986604 C T SCN3A Missense_Mutation p.R923Q 0.41 deleterious(0) possibly_damaging(0.749) TCGA-V5-A7RE-01 2 166019171 166019171 C G SCN3A Missense_Mutation p.E288Q 0.19 tolerated(0.15) benign(0.003) TCGA-V5-A7RE-01 2 168099201 168099201 C A XIRP2 Silent p.V433V 0.11 TCGA-V5-A7RE-01 2 1683968 1683968 A G PXDN Missense_Mutation p.C243R 0.16 deleterious(0) possibly_damaging(0.759) TCGA-V5-A7RE-01 2 182767078 182767078 G A SSFA2 Missense_Mutation p.S433N 0.12 tolerated(0.4) benign(0.007) TCGA-V5-A7RE-01 2 229890416 229890416 C A PID1 Missense_Mutation p.D227Y 0.34 deleterious(0) probably_damaging(0.988) TCGA-V5-A7RE-01 2 32853230 32853230 G A TTC27 5'UTR 0.25 TCGA-V5-A7RE-01 2 54128624 54128624 C T PSME4 Missense_Mutation p.V1050I 0.28 tolerated(0.22) benign(0.005) TCGA-V5-A7RE-01 2 5834126 5834126 A C SOX11 Missense_Mutation p.I425L 0.11 deleterious(0) possibly_damaging(0.785) TCGA-V5-A7RE-01 2 74789417 74789417 C T M1AP Missense_Mutation p.R403Q 0.21 deleterious(0.01) probably_damaging(0.968) TCGA-V5-A7RE-01 2 89028849 89028849 C T RPIA Silent p.H152H 0.25 TCGA-V5-A7RE-01 2 9474924 9474924 G A ASAP2 Silent p.L248L 0.18 TCGA-V5-A7RE-01 2 96809747 96809753 GCACCCG - DUSP2 Frame_Shift_Del p.R252Wfs*129 0.15 TCGA-V5-A7RE-01 2 97637859 97637859 C T FAM178B Missense_Mutation p.V115M 0.11 deleterious_low_confidence(0.01) probably_damaging(0.945) TCGA-V5-A7RE-01 3 119812226 119812226 T C GSK3B Missense_Mutation p.Q19R 0.21 tolerated_low_confidence(0.59) benign(0.001) TCGA-V5-A7RE-01 3 130282231 130282231 G T COL6A6 Missense_Mutation p.K128N 0.26 tolerated(0.09) possibly_damaging(0.538) TCGA-V5-A7RE-01 3 140277669 140277669 A C CLSTN2 Missense_Mutation p.T671P 0.19 tolerated(0.27) benign(0) TCGA-V5-A7RE-01 3 140282913 140282913 G A CLSTN2 Missense_Mutation p.E865K 0.17 tolerated(0.18) benign(0.011) TCGA-V5-A7RE-01 3 154859844 154859844 A T MME Missense_Mutation p.E341V 0.25 deleterious(0.02) benign(0.041) TCGA-V5-A7RE-01 3 175293960 175293960 C T NAALADL2 Silent p.D595D 0.21 TCGA-V5-A7RE-01 3 186333527 186333527 C T AHSG Silent p.C89C 0.68 TCGA-V5-A7RE-01 3 35726762 35726762 A G ARPP21 Intron 0.12 TCGA-V5-A7RE-01 3 43074077 43074077 C T FAM198A Missense_Mutation p.P108S 0.17 tolerated_low_confidence(0.14) benign(0.133) TCGA-V5-A7RE-01 3 44489870 44489870 C G ZNF445 Missense_Mutation p.K431N 0.20 tolerated(0.11) benign(0.403) TCGA-V5-A7RE-01 3 44611892 44611892 C A ZKSCAN7 Silent p.L430L 0.06 TCGA-V5-A7RE-01 3 9490247 9490247 C T SETD5 Missense_Mutation p.S760L 0.50 deleterious(0) probably_damaging(0.996) TCGA-V5-A7RE-01 3 9518082 9518082 C T SETD5 3'UTR 0.31 TCGA-V5-A7RE-01 4 134071353 134071353 C A PCDH10 Missense_Mutation p.L20I 0.15 tolerated(1) benign(0.083) TCGA-V5-A7RE-01 4 146085307 146085307 T - OTUD4 Frame_Shift_Del p.K73Rfs*18 0.25 TCGA-V5-A7RE-01 4 165798490 165798490 T A RP11-366M4.3 RNA 0.39 TCGA-V5-A7RE-01 4 165798496 165798496 C G RP11-366M4.3 RNA 0.38 TCGA-V5-A7RE-01 4 38775354 38775354 C T TLR10 Missense_Mutation p.V620I 0.28 tolerated(0.07) benign(0.006) TCGA-V5-A7RE-01 4 76924745 76924745 G T CXCL9 3'UTR 0.33 TCGA-V5-A7RE-01 5 140552744 140552744 T C PCDHB7 Silent p.L110L 0.29 TCGA-V5-A7RE-01 5 159476628 159476628 G A TTC1 Missense_Mutation p.E217K 0.21 deleterious(0.03) possibly_damaging(0.449) TCGA-V5-A7RE-01 5 164028139 164028139 T G CTC-340A15.2 RNA 0.17 TCGA-V5-A7RE-01 5 179745892 179745892 C G GFPT2 Missense_Mutation p.D287H 0.11 deleterious(0.03) benign(0.005) TCGA-V5-A7RE-01 5 180043381 180043381 C T FLT4 Missense_Mutation p.V1069I 0.34 deleterious(0) probably_damaging(0.995) TCGA-V5-A7RE-01 5 21802328 21802328 T C CDH12 Missense_Mutation p.I402V 0.24 tolerated(0.76) benign(0.057) TCGA-V5-A7RE-01 5 31799459 31799459 G A PDZD2 Missense_Mutation p.C35Y 0.24 deleterious(0.05) probably_damaging(0.999) TCGA-V5-A7RE-01 5 45262169 45262169 G A HCN1 Nonsense_Mutation p.R843* 0.17 TCGA-V5-A7RE-01 5 64019741 64019741 A C SREK1IP1 3'UTR 0.08 TCGA-V5-A7RE-01 5 71494043 71494043 C T MAP1B Missense_Mutation p.P1621S 0.13 probably_damaging(0.998) TCGA-V5-A7RE-01 5 89756984 89756984 C A MBLAC2 Nonstop_Mutation p.*280Yext*4 0.17 TCGA-V5-A7RE-01 6 110429777 110429777 C T WASF1 Missense_Mutation p.D126N 0.21 tolerated(1) unknown(0) TCGA-V5-A7RE-01 6 111694948 111694948 C A REV3L Missense_Mutation p.R1537I 0.13 deleterious(0) probably_damaging(0.949) TCGA-V5-A7RE-01 6 114182266 114182266 T G MARCKS 3'UTR 0.14 TCGA-V5-A7RE-01 6 131215506 131215506 C T EPB41L2 Missense_Mutation p.V489M 0.26 deleterious(0) probably_damaging(0.998) TCGA-V5-A7RE-01 6 151626944 151626944 C T AKAP12 Silent p.S75S 0.16 TCGA-V5-A7RE-01 6 152422190 152422190 T G ESR1 3'UTR 0.16 TCGA-V5-A7RE-01 6 160169927 160169927 C A WTAP Intron 0.16 TCGA-V5-A7RE-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.19 TCGA-V5-A7RE-01 6 26250430 26250431 CT - HIST1H3F Frame_Shift_Del p.R135Gfs*? 0.32 TCGA-V5-A7RE-01 6 27798995 27798995 C G HIST1H4K Nonstop_Mutation p.*104Sext*? 0.18 TCGA-V5-A7RE-01 6 28403278 28403278 A C ZSCAN23 Missense_Mutation p.L172R 0.15 tolerated(0.08) benign(0.001) TCGA-V5-A7RE-01 6 33141697 33141697 G A COL11A2 Missense_Mutation p.R760W 0.20 possibly_damaging(0.835) TCGA-V5-A7RE-01 6 35216506 35216506 T - SCUBE3 3'UTR 0.29 TCGA-V5-A7RE-01 6 37403397 37403397 C T CMTR1 Intron 0.48 TCGA-V5-A7RE-01 6 393167 393167 C T IRF4 Silent p.G5G 0.32 TCGA-V5-A7RE-01 6 42016448 42016448 C G TAF8 5'Flank 0.14 TCGA-V5-A7RE-01 6 45518781 45518781 A C RUNX2 3'UTR 0.15 TCGA-V5-A7RE-01 6 656675 656675 C T HUS1B Silent p.A90A 0.27 TCGA-V5-A7RE-01 6 80749976 80749976 G C TTK Missense_Mutation p.V791L 0.09 tolerated(0.69) benign(0.126) TCGA-V5-A7RE-01 6 99936085 99936085 G A USP45 Silent p.D235D 0.50 TCGA-V5-A7RE-01 7 100084483 100084483 C T NYAP1 Silent p.P36P 0.55 TCGA-V5-A7RE-01 7 103029515 103029515 T C SLC26A5 Missense_Mutation p.D485G 0.35 deleterious(0) probably_damaging(0.995) TCGA-V5-A7RE-01 7 140158882 140158882 G A MKRN1 Silent p.H232H 0.39 TCGA-V5-A7RE-01 7 148080841 148080841 C T CNTNAP2 Silent p.A1192A 0.46 TCGA-V5-A7RE-01 7 27282878 27282878 G A EVX1 Missense_Mutation p.A77T 0.41 tolerated(0.59) benign(0) TCGA-V5-A7RE-01 7 39832146 39832146 G A LINC00265 RNA 0.16 TCGA-V5-A7RE-01 7 44048437 44048437 G T SPDYE1 3'UTR 0.17 TCGA-V5-A7RE-01 7 75915066 75915066 G A SRRM3 3'UTR 0.09 TCGA-V5-A7RE-01 7 99757748 99757748 G A GAL3ST4 Missense_Mutation p.R422C 0.47 deleterious(0.01) possibly_damaging(0.742) TCGA-V5-A7RE-01 8 110986364 110986364 G A KCNV1 Missense_Mutation p.P85L 0.10 deleterious(0.01) benign(0) TCGA-V5-A7RE-01 8 110987892 110987892 G A KCNV1 5'UTR 0.18 TCGA-V5-A7RE-01 8 11280820 11280820 C T FAM167A 3'UTR 0.50 TCGA-V5-A7RE-01 8 116421182 116421182 T A TRPS1 3'UTR 0.37 TCGA-V5-A7RE-01 8 116421254 116421254 C G TRPS1 3'UTR 0.50 TCGA-V5-A7RE-01 8 116617156 116617156 C T TRPS1 Missense_Mutation p.R347H 0.06 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-V5-A7RE-01 8 124664819 124664819 G A KLHL38 Silent p.F116F 0.23 TCGA-V5-A7RE-01 8 16012634 16012634 A G MSR1 Silent p.G279G 0.31 TCGA-V5-A7RE-01 8 1905331 1905331 C A ARHGEF10 Missense_Mutation p.Q1313K 0.56 tolerated(0.35) probably_damaging(0.916) TCGA-V5-A7RE-01 8 23560561 23560561 G A NKX2-6 Silent p.G103G 0.58 TCGA-V5-A7RE-01 8 42611499 42611499 A G CHRNA6 Silent p.S281S 0.36 TCGA-V5-A7RE-01 8 55534695 55534695 G A RP1 Missense_Mutation p.V212M 0.17 tolerated(0.07) possibly_damaging(0.457) TCGA-V5-A7RE-01 8 67803132 67803132 G A MCMDC2 Missense_Mutation p.R369H 0.59 tolerated(0.08) benign(0.062) TCGA-V5-A7RE-01 8 69046447 69046447 G T PREX2 Missense_Mutation p.W1307L 0.50 deleterious(0) probably_damaging(0.986) TCGA-V5-A7RE-01 9 33030447 33030447 G A DNAJA1 Missense_Mutation p.G142D 0.69 deleterious(0.02) benign(0.358) TCGA-V5-A7RE-01 X 100098447 100098447 G A NOX1 3'UTR 0.36 TCGA-V5-A7RE-01 X 122616852 122616852 G A GRIA3 Missense_Mutation p.R881K 0.77 tolerated_low_confidence(0.4) possibly_damaging(0.626) TCGA-V5-A7RE-01 X 133379047 133379047 A G CCDC160 Missense_Mutation p.I73V 0.41 tolerated(0.1) benign(0) TCGA-V5-A7RE-01 X 138643757 138643757 T C F9 Missense_Mutation p.Y305H 0.36 deleterious(0) probably_damaging(1) TCGA-V5-A7RE-01 X 1537981 1537981 C T ASMTL Silent p.T424T 0.21 TCGA-V5-A7RE-01 X 47104174 47104174 G T USP11 Missense_Mutation p.G689V 0.78 tolerated(0.11) benign(0.41) TCGA-V5-A7RE-01 X 67751767 67751767 G A YIPF6 Missense_Mutation p.A213T 0.07 tolerated(0.05) possibly_damaging(0.711) TCGA-V5-A7RE-01 X 75648540 75648540 G A MAGEE1 Missense_Mutation p.A73T 0.76 tolerated_low_confidence(0.41) benign(0.033) TCGA-V5-AASV-01 10 13699134 13699142 CGCCCCCCG - FRMD4A In_Frame_Del p.A816_G818del 0.37 TCGA-V5-AASV-01 10 38345624 38345624 C T ZNF33A 3'UTR 0.60 TCGA-V5-AASV-01 10 43087866 43087866 T C ZNF33B 3'UTR 0.62 TCGA-V5-AASV-01 10 95070368 95070368 G T MYOF Missense_Mutation p.N1974K 0.45 deleterious(0.04) benign(0.072) TCGA-V5-AASV-01 11 100864384 100864384 C T TMEM133 3'UTR 0.32 TCGA-V5-AASV-01 11 102988516 102988516 G A DYNC2H1 Missense_Mutation p.R308H 0.35 benign(0.002) TCGA-V5-AASV-01 11 111753212 111753212 C A C11orf1 Silent p.R56R 0.20 TCGA-V5-AASV-01 11 125104986 125104986 G T PKNOX2 5'UTR 0.42 TCGA-V5-AASV-01 11 132016295 132016295 C T NTM Missense_Mutation p.T96M 0.25 tolerated(0.1) probably_damaging(0.947) TCGA-V5-AASV-01 11 2161780 2161780 G T IGF2 Intron 0.34 TCGA-V5-AASV-01 11 27680633 27680633 G T BDNF Intron 0.40 TCGA-V5-AASV-01 11 45935479 45935479 G A PEX16 Silent p.L260L 0.34 TCGA-V5-AASV-01 11 4674803 4674803 T A OR51E1 3'UTR 0.29 TCGA-V5-AASV-01 11 4936308 4936308 C T OR51G2 Missense_Mutation p.D196N 0.33 tolerated(0.1) benign(0.027) TCGA-V5-AASV-01 11 59423080 59423080 C T PATL1 Missense_Mutation p.R316H 0.41 tolerated(0.06) benign(0.028) TCGA-V5-AASV-01 11 61044094 61044094 G - VWCE Frame_Shift_Del p.P489Hfs*11 0.27 TCGA-V5-AASV-01 11 67075317 67075317 G A SSH3 Silent p.G264G 0.26 TCGA-V5-AASV-01 11 67191253 67191253 C T CARNS1 Silent p.F678F 0.25 TCGA-V5-AASV-01 11 71948432 71948433 - C INPPL1 Frame_Shift_Ins p.P1051Sfs*34 0.29 TCGA-V5-AASV-01 11 77727684 77727684 G A KCTD14 Silent p.N241N 0.43 TCGA-V5-AASV-01 11 787402 787402 G A CEND1 3'UTR 0.33 TCGA-V5-AASV-01 12 101188779 101188781 CTT - ANO4 5'UTR 0.36 TCGA-V5-AASV-01 12 110208200 110208200 T - FAM222A 3'UTR 0.38 TCGA-V5-AASV-01 12 11149514 11149514 C G TAS2R20 3'UTR 0.05 TCGA-V5-AASV-01 12 117484586 117484586 C T TESC Missense_Mutation p.R136Q 0.32 deleterious(0.03) possibly_damaging(0.861) TCGA-V5-AASV-01 12 48543170 48543173 TTCC - ASB8 Frame_Shift_Del p.K281Nfs*6 0.40 TCGA-V5-AASV-01 12 49431257 49431267 GGCCTGGGCAG - KMT2D Frame_Shift_Del p.P3291Hfs*6 0.24 TCGA-V5-AASV-01 12 53663026 53663027 TC - ESPL1 Frame_Shift_Del p.F102Cfs*39 0.23 TCGA-V5-AASV-01 12 58023911 58023911 C T B4GALNT1 Intron 0.33 TCGA-V5-AASV-01 12 68053496 68053499 GAGT - DYRK2 3'UTR 0.35 TCGA-V5-AASV-01 13 28830500 28830502 AGA - PAN3 In_Frame_Del p.R360del 0.31 TCGA-V5-AASV-01 13 37576435 37576437 AGG - EXOSC8 In_Frame_Del p.R16del 0.24 TCGA-V5-AASV-01 14 21897312 21897312 C A CHD8 Silent p.L342L 0.34 TCGA-V5-AASV-01 14 22982979 22982982 AAGT - TRAJ29 Missense_Mutation 0.41 TCGA-V5-AASV-01 14 24530854 24530854 C A LRRC16B Missense_Mutation p.A818E 0.25 deleterious(0) probably_damaging(0.937) TCGA-V5-AASV-01 14 38725089 38725089 G A CLEC14A Missense_Mutation p.R47W 0.42 tolerated(0.19) probably_damaging(0.958) TCGA-V5-AASV-01 14 45623219 45623219 T C FANCM Missense_Mutation p.Y383H 0.42 deleterious(0) benign(0.085) TCGA-V5-AASV-01 14 50089335 50089336 CA - MGAT2 3'UTR 0.29 TCGA-V5-AASV-01 14 74182470 74182473 AAGA - ELMSAN1 3'UTR 0.32 TCGA-V5-AASV-01 15 24928408 24928408 A C NPAP1 3'UTR 0.33 TCGA-V5-AASV-01 15 44038854 44038854 C T PDIA3 Silent p.I39I 0.26 TCGA-V5-AASV-01 15 54307297 54307297 C T UNC13C Nonsense_Mutation p.Q733* 0.40 TCGA-V5-AASV-01 15 68582270 68582270 C T FEM1B Missense_Mutation p.H192Y 0.27 tolerated(0.07) probably_damaging(0.996) TCGA-V5-AASV-01 15 99511702 99511702 C T PGPEP1L 3'UTR 0.30 TCGA-V5-AASV-01 16 1444165 1444165 G A UNKL Missense_Mutation p.R299C 0.55 deleterious(0) benign(0.292) TCGA-V5-AASV-01 16 28617217 28617217 C T SULT1A1 Silent p.A271A 0.24 TCGA-V5-AASV-01 16 28877252 28877252 G A SH2B1 Intron 0.54 TCGA-V5-AASV-01 16 86371017 86371017 C T LINC00917 RNA 0.58 TCGA-V5-AASV-01 17 21094331 21094333 GAA - DHRS7B In_Frame_Del p.K285del 0.33 TCGA-V5-AASV-01 17 44248371 44248371 A T KANSL1 Nonsense_Mutation p.L380* 0.61 TCGA-V5-AASV-01 17 56271184 56271186 CAA - EPX In_Frame_Del p.N154del 0.48 TCGA-V5-AASV-01 17 70117939 70117939 G A SOX9 Missense_Mutation p.S136N 0.56 deleterious(0) benign(0.423) TCGA-V5-AASV-01 17 70643714 70643714 G A SLC39A11 3'UTR 0.26 TCGA-V5-AASV-01 17 73900305 73900306 AC - MRPL38 Intron 0.21 TCGA-V5-AASV-01 18 12725672 12725673 TT - PSMG2 3'UTR 0.20 TCGA-V5-AASV-01 18 29264323 29264325 AGA - B4GALT6 In_Frame_Del p.F22del 0.34 TCGA-V5-AASV-01 18 39550410 39550410 G A PIK3C3 Missense_Mutation p.R174H 0.33 deleterious(0) possibly_damaging(0.812) TCGA-V5-AASV-01 18 52893749 52893749 T C TCF4 3'Flank 0.43 TCGA-V5-AASV-01 19 11123693 11123693 G T SMARCA4 Missense_Mutation p.M781I 0.23 probably_damaging(0.953) TCGA-V5-AASV-01 19 15730494 15730498 GCTTG ACTTGC CYP4F8 RNA 0.28 TCGA-V5-AASV-01 19 17476376 17476376 C A PLVAP Nonsense_Mutation p.E300* 0.28 TCGA-V5-AASV-01 19 1828269 1828269 A C REXO1 Silent p.P173P 0.53 TCGA-V5-AASV-01 19 18899065 18899065 C T COMP Missense_Mutation p.A311T 0.61 deleterious(0.03) possibly_damaging(0.701) TCGA-V5-AASV-01 19 19653755 19653755 G A CILP2 Silent p.G317G 0.32 TCGA-V5-AASV-01 19 20045728 20045729 CA - ZNF93 3'UTR 0.47 TCGA-V5-AASV-01 19 20117176 20117176 T A ZNF682 Nonsense_Mutation p.K379* 0.54 TCGA-V5-AASV-01 19 20117944 20117944 A G ZNF682 Missense_Mutation p.C123R 0.48 deleterious(0.02) benign(0.004) TCGA-V5-AASV-01 19 21606101 21606101 G A ZNF493 Missense_Mutation p.E214K 0.29 tolerated(0.06) benign(0.365) TCGA-V5-AASV-01 19 36214349 36214349 A - KMT2B Frame_Shift_Del p.Y1002Tfs*7 0.22 TCGA-V5-AASV-01 19 41209522 41209522 G A ADCK4 Silent p.P241P 0.30 TCGA-V5-AASV-01 19 49526391 49526391 A T CGB Missense_Mutation p.F84I 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-V5-AASV-01 19 53912609 53912609 G A ZNF765 3'UTR 0.68 TCGA-V5-AASV-01 19 56273251 56273251 G T RFPL4A Missense_Mutation p.A29S 0.66 tolerated(0.2) benign(0.007) TCGA-V5-AASV-01 19 58596563 58596563 G A ZSCAN18 Missense_Mutation p.A397V 0.35 tolerated(0.13) benign(0.033) TCGA-V5-AASV-01 19 8028463 8028464 AT - ELAVL1 Frame_Shift_Del p.Y295* 0.26 TCGA-V5-AASV-01 19 9084082 9084082 G T MUC16 Missense_Mutation p.P2578Q 0.30 unknown(0) TCGA-V5-AASV-01 19 9764000 9764000 G A ZNF562 Silent p.S302S 0.30 TCGA-V5-AASV-01 1 109472923 109472923 T G GPSM2 3'UTR 0.36 TCGA-V5-AASV-01 1 110884085 110884085 C T RBM15 Silent p.S686S 0.36 TCGA-V5-AASV-01 1 150936765 150936765 C T SETDB1 Silent p.Y1267Y 0.36 TCGA-V5-AASV-01 1 152085342 152085342 T G TCHH Missense_Mutation p.E117D 0.28 unknown(0) TCGA-V5-AASV-01 1 152278627 152278627 G C FLG Missense_Mutation p.S2912C 0.29 possibly_damaging(0.869) TCGA-V5-AASV-01 1 153745101 153745101 T C INTS3 Intron 0.05 TCGA-V5-AASV-01 1 156047372 156047372 C T MEX3A Missense_Mutation p.V186M 0.43 deleterious(0) probably_damaging(0.999) TCGA-V5-AASV-01 1 160388867 160388867 C T VANGL2 Missense_Mutation p.R90C 0.43 deleterious(0.01) probably_damaging(0.916) TCGA-V5-AASV-01 1 173907731 173907731 C A RC3H1 3'UTR 0.47 TCGA-V5-AASV-01 1 175365941 175365941 C A TNR Missense_Mutation p.A327S 0.37 tolerated(0.99) benign(0.064) TCGA-V5-AASV-01 1 204438822 204438822 G C PIK3C2B Missense_Mutation p.L37V 0.42 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-V5-AASV-01 1 204945917 204945917 G A NFASC Missense_Mutation p.V609M 0.38 deleterious(0) probably_damaging(0.991) TCGA-V5-AASV-01 1 236959022 236959022 G T MTR Missense_Mutation p.D7Y 0.41 deleterious_low_confidence(0.03) benign(0.017) TCGA-V5-AASV-01 1 38227500 38227500 G T EPHA10 Missense_Mutation p.R143S 0.40 tolerated(0.68) benign(0.257) TCGA-V5-AASV-01 1 46093254 46093256 AAT - GPBP1L1 3'UTR 0.30 TCGA-V5-AASV-01 1 64643832 64643832 A G ROR1 Missense_Mutation p.E703G 0.24 deleterious(0) probably_damaging(0.982) TCGA-V5-AASV-01 1 82434986 82434986 G A LPHN2 Missense_Mutation p.R866Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-V5-AASV-01 20 25656456 25656457 - T ZNF337 Frame_Shift_Ins p.C490Mfs*11 0.09 TCGA-V5-AASV-01 20 30777004 30777004 C A PLAGL2 3'Flank 0.43 TCGA-V5-AASV-01 20 31022592 31022592 C T ASXL1 Nonsense_Mutation p.R693* 0.40 TCGA-V5-AASV-01 20 3564710 3564710 A G ATRN Missense_Mutation p.Y977C 0.30 tolerated(0.14) possibly_damaging(0.827) TCGA-V5-AASV-01 20 62705859 62705859 C T RGS19 Missense_Mutation p.R63Q 0.36 tolerated(0.41) benign(0.001) TCGA-V5-AASV-01 21 32502599 32502599 C A TIAM1 Missense_Mutation p.W1326L 0.30 tolerated(0.29) benign(0.001) TCGA-V5-AASV-01 22 18220885 18220887 CTT - BID In_Frame_Del p.K204del 0.31 TCGA-V5-AASV-01 22 20941429 20941430 CA - MED15 3'UTR 0.38 TCGA-V5-AASV-01 22 35782733 35782733 G A HMOX1 Missense_Mutation p.R67H 0.31 tolerated(0.11) benign(0.036) TCGA-V5-AASV-01 22 46449699 46449699 C G C22orf26 Missense_Mutation p.R92P 0.41 tolerated_low_confidence(0.12) possibly_damaging(0.655) TCGA-V5-AASV-01 22 50728431 50728431 C A PLXNB2 Nonsense_Mutation p.E195* 0.34 TCGA-V5-AASV-01 22 50882340 50882340 G A PPP6R2 Silent p.A849A 0.40 TCGA-V5-AASV-01 22 50989685 50989685 G C SYCE3 Missense_Mutation p.Q86E 0.33 tolerated_low_confidence(0.15) benign(0.022) TCGA-V5-AASV-01 2 107449090 107449090 G T ST6GAL2 Missense_Mutation p.D358E 0.53 benign(0.072) TCGA-V5-AASV-01 2 163008700 163008700 G T GCG 5'UTR 0.45 TCGA-V5-AASV-01 2 163074549 163074549 A G FAP Missense_Mutation p.S237P 0.47 tolerated(0.15) probably_damaging(0.999) TCGA-V5-AASV-01 2 210805968 210805968 G A UNC80 Missense_Mutation p.D2158N 0.56 probably_damaging(0.994) TCGA-V5-AASV-01 2 215646207 215646208 TT - BARD1 Frame_Shift_Del p.S131Ffs*3 0.39 TCGA-V5-AASV-01 2 220071745 220071745 G A ZFAND2B Silent p.E12E 0.41 TCGA-V5-AASV-01 2 220432086 220432087 CA - OBSL1 Frame_Shift_Del p.V582Afs*5 0.18 TCGA-V5-AASV-01 2 234622316 234622316 G T UGT1A5 Missense_Mutation p.V227F 0.56 tolerated(0.67) benign(0.003) TCGA-V5-AASV-01 2 238785925 238785925 G A RAMP1 Missense_Mutation p.E38K 0.57 tolerated(0.09) benign(0.059) TCGA-V5-AASV-01 2 239049972 239049972 G A KLHL30 Missense_Mutation p.E193K 0.74 deleterious(0) possibly_damaging(0.861) TCGA-V5-AASV-01 2 27564940 27564940 G A GTF3C2 Missense_Mutation p.R244W 0.24 deleterious(0) benign(0.427) TCGA-V5-AASV-01 2 45232391 45232391 C A SIX2 3'UTR 0.12 TCGA-V5-AASV-01 2 56103786 56103786 C G EFEMP1 Missense_Mutation p.E284D 0.25 deleterious(0.04) probably_damaging(0.999) TCGA-V5-AASV-01 3 111859919 111859919 A G SLC9C1 3'UTR 0.38 TCGA-V5-AASV-01 3 111859922 111859922 T A SLC9C1 3'UTR 0.38 TCGA-V5-AASV-01 3 1414531 1414531 G C CNTN6 Missense_Mutation p.G560R 0.30 deleterious(0) probably_damaging(1) TCGA-V5-AASV-01 3 147121925 147121925 G A ZIC4 5'UTR 0.49 TCGA-V5-AASV-01 3 176755901 176755901 G T TBL1XR1 Missense_Mutation p.D369E 0.27 deleterious(0.02) probably_damaging(0.985) TCGA-V5-AASV-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.29 deleterious(0.02) probably_damaging(0.959) TCGA-V5-AASV-01 3 194063288 194063288 C T CPN2 Silent p.P48P 0.53 TCGA-V5-AASV-01 3 44879865 44879865 G T KIF15 Missense_Mutation p.Q1090H 0.31 deleterious(0.01) possibly_damaging(0.728) TCGA-V5-AASV-01 3 47165518 47165519 GA - SETD2 Frame_Shift_Del p.S203Ifs*33 0.23 TCGA-V5-AASV-01 3 48561150 48561150 G T PFKFB4 Missense_Mutation p.F402L 0.36 possibly_damaging(0.612) TCGA-V5-AASV-01 3 49570287 49570287 C A DAG1 Silent p.G781G 0.38 TCGA-V5-AASV-01 3 62229529 62229529 T C PTPRG Silent p.P808P 0.38 TCGA-V5-AASV-01 4 144449849 144449849 T A SMARCA5 Missense_Mutation p.D357E 0.74 tolerated(0.13) benign(0.119) TCGA-V5-AASV-01 4 186544452 186544452 G A SORBS2 Missense_Mutation p.R807W 0.49 deleterious(0) probably_damaging(0.999) TCGA-V5-AASV-01 4 37448106 37448106 C T KIAA1239 Missense_Mutation p.S1499L 0.35 deleterious(0.01) benign(0.137) TCGA-V5-AASV-01 4 39905716 39905716 G A PDS5A Silent p.V443V 0.30 TCGA-V5-AASV-01 4 4199591 4199591 C T OTOP1 Missense_Mutation p.A324T 0.40 tolerated(0.38) benign(0.129) TCGA-V5-AASV-01 4 81122551 81122551 C T PRDM8 Silent p.N109N 0.48 TCGA-V5-AASV-01 4 86893364 86893364 T - ARHGAP24 Intron 0.38 TCGA-V5-AASV-01 4 88029432 88029432 G A AFF1 Missense_Mutation p.E500K 0.32 deleterious(0.04) unknown(0) TCGA-V5-AASV-01 5 112214410 112214411 CA - REEP5 3'UTR 0.24 TCGA-V5-AASV-01 5 126113552 126113554 CTC - LMNB1 In_Frame_Del p.L119del 0.44 TCGA-V5-AASV-01 5 139745542 139745545 CTTA - SLC4A9 Frame_Shift_Del p.T637Lfs*11 0.20 TCGA-V5-AASV-01 5 140616411 140616411 A G PCDHB18 RNA 0.36 TCGA-V5-AASV-01 5 14610461 14610461 G A FAM105A 3'UTR 0.42 TCGA-V5-AASV-01 5 150400197 150400197 A G GPX3 5'UTR 0.31 TCGA-V5-AASV-01 5 151183521 151183521 C T G3BP1 Nonsense_Mutation p.R424* 0.33 TCGA-V5-AASV-01 5 159840617 159840617 C T SLU7 Missense_Mutation p.R139Q 0.41 deleterious(0.04) benign(0.079) TCGA-V5-AASV-01 5 167671581 167671581 G A TENM2 Missense_Mutation p.V1893M 0.32 deleterious(0) probably_damaging(0.954) TCGA-V5-AASV-01 5 167691134 167691137 ATAA - TENM2 3'Flank 0.29 TCGA-V5-AASV-01 5 168690685 168690685 G A SLIT3 Intron 0.33 TCGA-V5-AASV-01 5 169025515 169025515 C T SPDL1 Silent p.V356V 0.30 TCGA-V5-AASV-01 5 176696681 176696681 C - NSD1 Frame_Shift_Del p.P1795Qfs*26 0.39 TCGA-V5-AASV-01 5 176935396 176935396 T G DOK3 Missense_Mutation p.I128L 0.40 deleterious(0.01) possibly_damaging(0.591) TCGA-V5-AASV-01 5 23526880 23526880 T C PRDM9 Silent p.F561F 0.34 TCGA-V5-AASV-01 5 36066850 36066855 GAGAAG AA UGT3A2 Frame_Shift_Del p.L13Ffs*13 0.28 TCGA-V5-AASV-01 5 72354318 72354320 TCT - FCHO2 In_Frame_Del p.S442del 0.43 TCGA-V5-AASV-01 6 100838305 100838305 G T SIM1 Missense_Mutation p.L745M 0.32 tolerated_low_confidence(0.18) benign(0.022) TCGA-V5-AASV-01 6 1610969 1610971 AAG - FOXC1 In_Frame_Del p.K98del 0.57 TCGA-V5-AASV-01 6 17616215 17616217 AAG - NUP153 3'UTR 0.36 TCGA-V5-AASV-01 6 26156678 26156680 GAA - HIST1H1E In_Frame_Del p.K23del 0.45 TCGA-V5-AASV-01 6 26199784 26199784 A T HIST1H2BF 5'UTR 0.33 TCGA-V5-AASV-01 6 43487822 43487825 AGAT - POLR1C Frame_Shift_Del p.D136Lfs*28 0.36 TCGA-V5-AASV-01 6 44272859 44272859 C T AARS2 Missense_Mutation p.R504H 0.08 tolerated(0.15) benign(0.007) TCGA-V5-AASV-01 6 50791203 50791203 G A TFAP2B Silent p.P55P 0.36 TCGA-V5-AASV-01 6 52268714 52268714 T G PAQR8 Missense_Mutation p.C235G 0.48 tolerated(0.18) possibly_damaging(0.681) TCGA-V5-AASV-01 6 54791310 54791310 G A FAM83B Missense_Mutation p.G196S 0.27 deleterious(0.04) benign(0.12) TCGA-V5-AASV-01 6 64290769 64290770 - A PTP4A1 3'UTR 0.23 TCGA-V5-AASV-01 6 80880998 80880998 G A BCKDHB Splice_Site p.X212_splice 0.28 TCGA-V5-AASV-01 7 100799965 100799965 G A AP1S1 Missense_Mutation p.V32M 0.22 tolerated(0.17) benign(0.019) TCGA-V5-AASV-01 7 114329835 114329835 A T FOXP2 Splice_Site p.X693_splice 0.26 TCGA-V5-AASV-01 7 116200802 116200803 - T CAV1 3'UTR 0.13 TCGA-V5-AASV-01 7 120387853 120387853 G A KCND2 Missense_Mutation p.D612N 0.18 tolerated_low_confidence(0.37) benign(0.001) TCGA-V5-AASV-01 7 142561730 142561730 G A EPHB6 Missense_Mutation p.E58K 0.12 deleterious(0) probably_damaging(0.999) TCGA-V5-AASV-01 7 142832382 142832382 A G PIP Missense_Mutation p.E64G 0.49 deleterious(0) benign(0.112) TCGA-V5-AASV-01 7 150490688 150490688 C A TMEM176B Missense_Mutation p.V106L 0.38 deleterious(0) benign(0.048) TCGA-V5-AASV-01 7 154774989 154774989 T A PAXIP1 Silent p.G126G 0.21 TCGA-V5-AASV-01 7 28997167 28997167 C T AC005013.5 5'Flank 0.46 TCGA-V5-AASV-01 7 2956937 2956937 C A CARD11 Missense_Mutation p.G897V 0.05 tolerated(0.08) possibly_damaging(0.735) TCGA-V5-AASV-01 7 6731402 6731404 AGA - ZNF12 In_Frame_Del p.F390del 0.21 TCGA-V5-AASV-01 7 82584500 82584500 A G PCLO Silent p.H1923H 0.25 TCGA-V5-AASV-01 7 92244099 92244099 A G CDK6 3'UTR 0.28 TCGA-V5-AASV-01 8 117858872 117858872 C T RAD21 3'UTR 0.25 TCGA-V5-AASV-01 8 13357530 13357530 C T DLC1 Nonsense_Mutation p.W17* 0.25 TCGA-V5-AASV-01 8 144620514 144620514 A G ZC3H3 Silent p.S341S 0.27 TCGA-V5-AASV-01 8 145059488 145059488 G A PARP10 Nonsense_Mutation p.R228* 0.37 TCGA-V5-AASV-01 8 145559791 145559791 G A SCRT1 Missense_Mutation p.A14V 0.20 tolerated(0.08) benign(0.153) TCGA-V5-AASV-01 8 19250858 19250860 CTT - SH2D4A In_Frame_Del p.L362del 0.38 TCGA-V5-AASV-01 8 27277410 27277412 AGG - PTK2B Splice_Site p.X69_splice 0.29 TCGA-V5-AASV-01 8 3224680 3224680 C A CSMD1 Missense_Mutation p.A997S 0.35 possibly_damaging(0.769) TCGA-V5-AASV-01 8 48841652 48841653 CT - PRKDC Frame_Shift_Del p.E713Gfs*4 0.16 TCGA-V5-AASV-01 8 52730688 52730688 T C PCMTD1 3'UTR 0.30 TCGA-V5-AASV-01 8 53023562 53023562 C A ST18 3'UTR 0.28 TCGA-V5-AASV-01 8 59484765 59484765 T C SDCBP Silent p.N44N 0.29 TCGA-V5-AASV-01 8 618736 618736 C T ERICH1 Missense_Mutation p.D374N 0.20 tolerated(0.39) benign(0.002) TCGA-V5-AASV-01 8 68111035 68111035 G C ARFGEF1 3'UTR 0.23 TCGA-V5-AASV-01 8 95538542 95538543 - A KIAA1429 Frame_Shift_Ins p.T644Yfs*8 0.19 TCGA-V5-AASV-01 9 100079410 100079410 G A CCDC180 Missense_Mutation p.E331K 0.68 tolerated(0.17) possibly_damaging(0.863) TCGA-V5-AASV-01 9 139417576 139417577 - A NOTCH1 Frame_Shift_Ins p.P157Afs*99 0.40 TCGA-V5-AASV-01 9 35700018 35700018 G A TLN1 Missense_Mutation p.R2241W 0.31 deleterious(0) benign(0.285) TCGA-V5-AASV-01 9 35906300 35906300 G A HRCT1 Missense_Mutation p.G6R 0.46 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-V5-AASV-01 9 5126757 5126757 G A JAK2 Missense_Mutation p.R1122Q 0.34 tolerated(1) benign(0.049) TCGA-V5-AASV-01 X 140984538 140984538 G A MAGEC3 Intron 0.89 TCGA-V5-AASV-01 X 30326923 30326923 C T NR0B1 Silent p.A186A 0.78 TCGA-V5-AASV-01 X 37027774 37027774 C - FAM47C Frame_Shift_Del p.K432Rfs*393 0.41 TCGA-V5-AASV-01 X 69898668 69898668 C T TEX11 Missense_Mutation p.A425T 0.67 tolerated(0.09) benign(0.053) TCGA-V5-AASW-01 10 112769572 112769572 C A SHOC2 Missense_Mutation p.H508Q 0.56 tolerated(0.3) benign(0.009) TCGA-V5-AASW-01 10 11356187 11356187 C T CELF2 Silent p.A354A 0.32 TCGA-V5-AASW-01 10 12391714 12391714 C A CAMK1D 5'UTR 0.59 TCGA-V5-AASW-01 10 32560606 32560606 T C EPC1 Missense_Mutation p.I772V 0.31 tolerated(1) benign(0.001) TCGA-V5-AASW-01 10 42831504 42831504 T C RP11-313J2.1 RNA 0.44 TCGA-V5-AASW-01 10 64429984 64429984 G A ZNF365 Missense_Mutation p.D438N 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.741) TCGA-V5-AASW-01 10 99968341 99968341 G A R3HCC1L Missense_Mutation p.G157E 0.36 tolerated(0.27) benign(0.081) TCGA-V5-AASW-01 11 105797547 105797547 C T GRIA4 Missense_Mutation p.A643V 0.25 deleterious(0) probably_damaging(0.954) TCGA-V5-AASW-01 11 110035943 110035943 G T ZC3H12C Silent p.P711P 0.50 TCGA-V5-AASW-01 11 124508462 124508462 C G SIAE Missense_Mutation p.Q432H 0.08 tolerated(0.11) benign(0.004) TCGA-V5-AASW-01 11 134147678 134147678 C T GLB1L3 Silent p.P78P 0.13 TCGA-V5-AASW-01 11 27362982 27362982 T C CCDC34 Missense_Mutation p.K241R 0.32 tolerated(0.16) benign(0.163) TCGA-V5-AASW-01 11 47368187 47368187 C T MYBPC3 Missense_Mutation p.R306Q 0.10 tolerated(0.44) benign(0.027) TCGA-V5-AASW-01 11 55038032 55038032 A C TRIM48 3'UTR 0.64 TCGA-V5-AASW-01 11 562466 562466 A G RASSF7 Missense_Mutation p.H171R 0.31 tolerated(0.19) benign(0.08) TCGA-V5-AASW-01 11 6007249 6007249 C T OR52L1 Silent p.A304A 0.21 TCGA-V5-AASW-01 11 62363243 62363243 C T MTA2 Missense_Mutation p.G412E 0.28 tolerated(0.13) probably_damaging(0.999) TCGA-V5-AASW-01 11 64781661 64781661 G A ARL2 5'UTR 0.41 TCGA-V5-AASW-01 11 6867574 6867574 C G OR10A5 Missense_Mutation p.R221G 0.16 tolerated(0.07) benign(0.399) TCGA-V5-AASW-01 11 73122547 73122547 C T FAM168A Silent p.P104P 0.15 TCGA-V5-AASW-01 11 89531678 89531678 T C TRIM49 Missense_Mutation p.S327G 0.11 tolerated(0.19) benign(0.119) TCGA-V5-AASW-01 11 89774338 89774338 A G TRIM49C Missense_Mutation p.S327G 0.21 tolerated(0.19) benign(0.119) TCGA-V5-AASW-01 11 96074681 96074681 G A MAML2 Missense_Mutation p.P127S 0.28 possibly_damaging(0.857) TCGA-V5-AASW-01 12 104131412 104131412 G A STAB2 Missense_Mutation p.G1851S 0.20 deleterious(0.02) possibly_damaging(0.492) TCGA-V5-AASW-01 12 132561952 132561952 C T EP400 Missense_Mutation p.P3036S 0.25 probably_damaging(0.986) TCGA-V5-AASW-01 12 40928552 40928552 T G MUC19 Intron 0.45 TCGA-V5-AASW-01 12 41871704 41871704 G C PDZRN4 Intron 0.17 TCGA-V5-AASW-01 12 49446706 49446706 C T KMT2D Silent p.V368V 0.16 TCGA-V5-AASW-01 12 55820661 55820661 G C OR6C76 Missense_Mutation p.L208F 0.31 deleterious_low_confidence(0.01) benign(0.247) TCGA-V5-AASW-01 12 58114597 58114597 C T OS9 Missense_Mutation p.R637C 0.24 deleterious(0) possibly_damaging(0.677) TCGA-V5-AASW-01 12 8926142 8926142 C T RIMKLB Missense_Mutation p.P308L 0.27 deleterious_low_confidence(0.01) probably_damaging(0.991) TCGA-V5-AASW-01 13 103384913 103384913 G A CCDC168 Missense_Mutation p.S1416F 0.47 deleterious(0.03) unknown(0) TCGA-V5-AASW-01 13 25670333 25670333 G A PABPC3 5'UTR 0.47 TCGA-V5-AASW-01 13 42149965 42149965 C T VWA8 Missense_Mutation p.V1761I 0.18 tolerated(0.27) benign(0.097) TCGA-V5-AASW-01 13 46559795 46559795 G A ZC3H13 Nonsense_Mutation p.R453* 0.21 TCGA-V5-AASW-01 13 75923344 75923344 G C TBC1D4 Missense_Mutation p.P457R 0.32 deleterious(0) probably_damaging(1) TCGA-V5-AASW-01 14 72205004 72205004 G A SIPA1L1 Missense_Mutation p.E1745K 0.10 deleterious(0) probably_damaging(0.987) TCGA-V5-AASW-01 14 94745742 94745742 T C PPP4R4 3'UTR 0.20 TCGA-V5-AASW-01 15 24926166 24926166 G A NPAP1 3'UTR 0.68 TCGA-V5-AASW-01 15 29410481 29410481 C T APBA2 3'UTR 0.45 TCGA-V5-AASW-01 15 42169051 42169051 T C SPTBN5 Silent p.A1269A 0.14 TCGA-V5-AASW-01 15 43348619 43348619 C T UBR1 Missense_Mutation p.E402K 0.20 deleterious(0) benign(0.069) TCGA-V5-AASW-01 15 44620946 44620946 A T CASC4 Missense_Mutation p.K149M 0.16 deleterious(0) possibly_damaging(0.635) TCGA-V5-AASW-01 15 50189663 50189663 G T ATP8B4 Silent p.V841V 0.43 TCGA-V5-AASW-01 15 52201248 52201248 G A TMOD3 3'UTR 0.33 TCGA-V5-AASW-01 15 54306750 54306750 A T UNC13C Missense_Mutation p.E550D 0.42 tolerated_low_confidence(0.09) benign(0.015) TCGA-V5-AASW-01 15 54306751 54306751 T A UNC13C Missense_Mutation p.S551T 0.45 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-V5-AASW-01 15 57526275 57526276 - CT TCF12 Frame_Shift_Ins p.G336Lfs*62 0.33 TCGA-V5-AASW-01 15 63916468 63916468 G A HERC1 Missense_Mutation p.P4445L 0.05 possibly_damaging(0.611) TCGA-V5-AASW-01 15 71128817 71128817 G A LARP6 Silent p.N76N 0.45 TCGA-V5-AASW-01 15 77759475 77759475 G A HMG20A Silent p.K92K 0.09 TCGA-V5-AASW-01 16 27268847 27268847 G A NSMCE1 Silent p.H15H 0.13 TCGA-V5-AASW-01 16 28503113 28503113 G A CLN3 5'UTR 0.44 TCGA-V5-AASW-01 16 3602277 3602277 C A NLRC3 Silent p.L804L 0.30 TCGA-V5-AASW-01 16 67695843 67695843 C T PARD6A Missense_Mutation p.R112W 0.13 deleterious(0) probably_damaging(0.973) TCGA-V5-AASW-01 17 18539709 18539709 A G TBC1D28 3'UTR 0.39 TCGA-V5-AASW-01 17 26962375 26962375 C T KIAA0100 Missense_Mutation p.V744I 0.43 tolerated(0.43) benign(0.281) TCGA-V5-AASW-01 17 37420506 37420506 C G FBXL20 Missense_Mutation p.L375F 0.09 deleterious(0) possibly_damaging(0.831) TCGA-V5-AASW-01 17 38249070 38249070 G A NR1D1 3'UTR 0.25 TCGA-V5-AASW-01 17 38904488 38904488 C T KRT25 3'UTR 0.13 TCGA-V5-AASW-01 17 39032466 39032466 T G KRT20 3'UTR 0.13 TCGA-V5-AASW-01 17 4796810 4796810 G A MINK1 Missense_Mutation p.E828K 0.21 deleterious(0.01) benign(0.173) TCGA-V5-AASW-01 17 65186379 65186379 G A HELZ Missense_Mutation p.S217L 0.11 tolerated(0.11) benign(0.165) TCGA-V5-AASW-01 17 68171795 68171795 C T KCNJ2 Silent p.D205D 0.28 TCGA-V5-AASW-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.74 tolerated(0.11) benign(0.308) TCGA-V5-AASW-01 19 15939884 15939884 G T UCA1 RNA 0.40 TCGA-V5-AASW-01 19 22848051 22848051 G C ZNF492 Missense_Mutation p.C527S 0.65 deleterious(0) benign(0.003) TCGA-V5-AASW-01 19 36259320 36259320 G A C19orf55 3'UTR 0.68 TCGA-V5-AASW-01 19 36351921 36351921 C T KIRREL2 Missense_Mutation p.R347C 0.08 deleterious(0) probably_damaging(0.965) TCGA-V5-AASW-01 19 38861354 38861354 G A CATSPERG Missense_Mutation p.M1134I 0.55 tolerated_low_confidence(0.47) benign(0.043) TCGA-V5-AASW-01 19 38909030 38909030 C T RASGRP4 Splice_Site p.X279_splice 0.14 TCGA-V5-AASW-01 19 50455220 50455220 G C SIGLEC11 Missense_Mutation p.I586M 0.23 tolerated(0.24) benign(0.018) TCGA-V5-AASW-01 19 58880231 58880231 G A ZNF837 Missense_Mutation p.R157W 0.50 tolerated(0.2) possibly_damaging(0.639) TCGA-V5-AASW-01 1 148341868 148341868 T G NBPF20 Missense_Mutation p.E235D 0.14 benign(0.217) TCGA-V5-AASW-01 1 151491490 151491490 C T CGN Silent p.S165S 0.41 TCGA-V5-AASW-01 1 154987921 154987921 C T ZBTB7B Missense_Mutation p.S296F 0.42 deleterious(0.05) probably_damaging(0.919) TCGA-V5-AASW-01 1 155265486 155265486 C T PKLR Silent p.A115A 0.17 TCGA-V5-AASW-01 1 156713965 156713965 T A HDGF Missense_Mutation p.D176V 0.40 deleterious(0) possibly_damaging(0.698) TCGA-V5-AASW-01 1 159505479 159505479 A G OR10J5 Silent p.L107L 0.23 TCGA-V5-AASW-01 1 162343935 162343935 C T C1orf111 Missense_Mutation p.R230Q 0.58 tolerated(0.2) possibly_damaging(0.72) TCGA-V5-AASW-01 1 166039702 166039702 T C FAM78B Missense_Mutation p.T188A 0.73 tolerated(0.05) probably_damaging(0.987) TCGA-V5-AASW-01 1 1717255 1717255 A T GNB1 3'UTR 0.12 TCGA-V5-AASW-01 1 174417291 174417291 G T GPR52 Missense_Mutation p.M14I 0.52 tolerated_low_confidence(0.38) benign(0) TCGA-V5-AASW-01 1 177249883 177249883 G A BRINP2 Missense_Mutation p.R524H 0.40 deleterious(0) probably_damaging(0.996) TCGA-V5-AASW-01 1 204373571 204373571 C T PPP1R15B 3'UTR 0.42 TCGA-V5-AASW-01 1 204937483 204937483 C T NFASC Silent p.S271S 0.35 TCGA-V5-AASW-01 1 211093036 211093036 C T KCNH1 Missense_Mutation p.A470T 0.52 deleterious(0.01) probably_damaging(0.929) TCGA-V5-AASW-01 1 212241589 212241589 G A DTL Missense_Mutation p.R246H 0.05 deleterious(0.01) probably_damaging(1) TCGA-V5-AASW-01 1 216850796 216850796 C T ESRRG Missense_Mutation p.D37N 0.62 tolerated_low_confidence(0.24) benign(0.167) TCGA-V5-AASW-01 1 221057561 221057561 C T HLX Missense_Mutation p.R328W 0.52 deleterious(0) probably_damaging(1) TCGA-V5-AASW-01 1 228476026 228476026 G A OBSCN Splice_Site p.X3788_splice 0.67 TCGA-V5-AASW-01 1 229462666 229462666 C T CCSAP Missense_Mutation p.R152Q 0.07 tolerated(0.37) benign(0.095) TCGA-V5-AASW-01 1 234744343 234744344 - GA IRF2BP2 Frame_Shift_Ins p.N300Sfs*33 0.29 TCGA-V5-AASW-01 1 236906269 236906269 G A ACTN2 Missense_Mutation p.R394Q 0.38 tolerated(0.29) benign(0.005) TCGA-V5-AASW-01 1 43396408 43396408 C G SLC2A1 Silent p.L135L 0.47 TCGA-V5-AASW-01 1 70541880 70541880 C T LRRC7 Missense_Mutation p.P1413S 0.39 tolerated(0.08) probably_damaging(0.997) TCGA-V5-AASW-01 1 79095535 79095535 A G IFI44L Missense_Mutation p.I220V 0.34 tolerated(1) benign(0.002) TCGA-V5-AASW-01 1 93575872 93575872 C T MTF2 Silent p.L31L 0.42 TCGA-V5-AASW-01 20 31984822 31984822 C T CDK5RAP1 Missense_Mutation p.G17R 0.50 tolerated_low_confidence(0.15) benign(0.005) TCGA-V5-AASW-01 20 32295572 32295572 G A PXMP4 Silent p.S193S 0.33 TCGA-V5-AASW-01 20 33875493 33875493 G A FAM83C Silent p.L363L 0.17 TCGA-V5-AASW-01 20 3678715 3678715 G A SIGLEC1 Missense_Mutation p.R618W 0.38 deleterious(0.03) benign(0.082) TCGA-V5-AASW-01 20 46282996 46282996 A T NCOA3 3'Flank 0.07 TCGA-V5-AASW-01 20 57035804 57035804 G A APCDD1L 3'UTR 0.27 TCGA-V5-AASW-01 20 57899499 57899499 G A EDN3 Silent p.Q234Q 0.42 TCGA-V5-AASW-01 20 61511340 61511340 C A DIDO1 Missense_Mutation p.G1990C 0.32 possibly_damaging(0.903) TCGA-V5-AASW-01 21 15882676 15882676 C T SAMSN1 Silent p.T240T 0.56 TCGA-V5-AASW-01 21 35893939 35893939 G A RCAN1 Silent p.S148S 0.26 TCGA-V5-AASW-01 21 43504206 43504206 C T UMODL1 Missense_Mutation p.S111F 0.10 deleterious(0) possibly_damaging(0.508) TCGA-V5-AASW-01 21 46895411 46895411 G A COL18A1 Missense_Mutation p.G434R 0.19 unknown(0) TCGA-V5-AASW-01 22 26164771 26164771 G A MYO18B Silent p.G296G 0.31 TCGA-V5-AASW-01 22 26932333 26932333 G A TPST2 Missense_Mutation p.A321V 0.42 tolerated(0.09) benign(0.052) TCGA-V5-AASW-01 22 28379472 28379472 G A TTC28 Silent p.I2061I 0.41 TCGA-V5-AASW-01 22 37637065 37637065 G A RAC2 Intron 0.38 TCGA-V5-AASW-01 22 45745630 45745630 T C SMC1B Silent p.L1158L 0.30 TCGA-V5-AASW-01 2 100623713 100623713 A G AFF3 Silent p.T153T 0.21 TCGA-V5-AASW-01 2 106710608 106710608 C T UXS1 Silent p.P384P 0.19 TCGA-V5-AASW-01 2 125204490 125204490 G A CNTNAP5 Silent p.T298T 0.32 TCGA-V5-AASW-01 2 132914994 132914994 G A ANKRD30BL Missense_Mutation p.T74I 0.48 deleterious(0) probably_damaging(0.995) TCGA-V5-AASW-01 2 149247654 149247654 A C MBD5 Silent p.R1252R 0.26 TCGA-V5-AASW-01 2 179658218 179658218 G A TTN Silent p.A483A 0.60 TCGA-V5-AASW-01 2 187501819 187501819 A G ITGAV Missense_Mutation p.N262S 0.24 tolerated(0.95) benign(0.124) TCGA-V5-AASW-01 2 189876967 189876967 T A COL3A1 3'UTR 0.06 TCGA-V5-AASW-01 2 228883332 228883332 C T SPHKAP Silent p.E746E 0.29 TCGA-V5-AASW-01 2 238283448 238283448 G A COL6A3 Missense_Mutation p.R1096C 0.35 probably_damaging(0.99) TCGA-V5-AASW-01 2 241569885 241569885 C T GPR35 Silent p.S203S 0.18 TCGA-V5-AASW-01 2 242573179 242573179 C G THAP4 Silent p.S131S 0.15 TCGA-V5-AASW-01 2 38201273 38201273 C T RMDN2 Silent p.V359V 0.11 TCGA-V5-AASW-01 2 44460854 44460854 C G PPM1B 3'Flank 0.19 TCGA-V5-AASW-01 2 60688816 60688816 C T BCL11A Missense_Mutation p.D411N 0.61 tolerated(0.18) possibly_damaging(0.831) TCGA-V5-AASW-01 2 70131515 70131515 C T SNRNP27 3'UTR 0.24 TCGA-V5-AASW-01 2 72358980 72358980 G A CYP26B1 3'UTR 0.15 TCGA-V5-AASW-01 2 87012810 87012810 C T CD8A 3'UTR 0.43 TCGA-V5-AASW-01 2 97465340 97465340 G A CNNM4 Missense_Mutation p.A635T 0.46 deleterious(0.01) benign(0.087) TCGA-V5-AASW-01 3 101520401 101520401 A G NXPE3 Missense_Mutation p.Y139C 0.41 tolerated(0.08) probably_damaging(0.999) TCGA-V5-AASW-01 3 111697888 111697888 G A ABHD10 5'UTR 0.24 TCGA-V5-AASW-01 3 121836911 121836911 G A CD86 Silent p.E288E 0.07 TCGA-V5-AASW-01 3 128199937 128199937 C T GATA2 Silent p.P456P 0.38 TCGA-V5-AASW-01 3 132169579 132169579 C T DNAJC13 Missense_Mutation p.P142L 0.34 tolerated(0.05) benign(0.043) TCGA-V5-AASW-01 3 138213701 138213701 A - CEP70 3'UTR 0.25 TCGA-V5-AASW-01 3 138763216 138763216 C T PRR23C Missense_Mutation p.A83T 0.32 deleterious(0.04) benign(0.22) TCGA-V5-AASW-01 3 170781598 170781598 A G TNIK 3'UTR 0.14 TCGA-V5-AASW-01 3 172224587 172224587 A T TNFSF10 Missense_Mutation p.F181I 0.10 tolerated(0.06) benign(0.073) TCGA-V5-AASW-01 3 184081316 184081316 G C POLR2H Silent p.V12V 0.23 TCGA-V5-AASW-01 3 184081340 184081340 G A POLR2H Silent p.K20K 0.26 TCGA-V5-AASW-01 3 184081347 184081347 G A POLR2H Missense_Mutation p.D23N 0.23 deleterious(0.03) benign(0.164) TCGA-V5-AASW-01 3 24003473 24003473 C T NR1D2 Missense_Mutation p.R175W 0.38 deleterious(0) probably_damaging(0.998) TCGA-V5-AASW-01 3 49397233 49397233 G - RHOA 3'UTR 0.30 TCGA-V5-AASW-01 3 51419778 51419778 C T DOCK3 3'UTR 0.50 TCGA-V5-AASW-01 3 56681036 56681036 G A FAM208A Missense_Mutation p.P577S 0.24 tolerated(0.32) benign(0.007) TCGA-V5-AASW-01 3 62499335 62499335 G T CADPS Intron 0.14 TCGA-V5-AASW-01 3 86990686 86990686 A G VGLL3 3'UTR 0.42 TCGA-V5-AASW-01 4 119203107 119203108 - T PRSS12 Frame_Shift_Ins p.S871Kfs*75 0.27 TCGA-V5-AASW-01 4 1231561 1231561 A G CTBP1 Intron 0.13 TCGA-V5-AASW-01 4 125593272 125593272 C T ANKRD50 Missense_Mutation p.R387H 0.40 deleterious(0.03) benign(0.032) TCGA-V5-AASW-01 4 134111700 134111700 T A PCDH10 3'UTR 0.31 TCGA-V5-AASW-01 4 142053712 142053712 T C RNF150 Missense_Mutation p.Q84R 0.30 tolerated(0.58) benign(0.001) TCGA-V5-AASW-01 4 2067595 2067595 C G NAT8L 3'UTR 0.19 TCGA-V5-AASW-01 4 39871028 39871028 C T PDS5A Missense_Mutation p.E831K 0.05 deleterious(0) probably_damaging(0.981) TCGA-V5-AASW-01 4 47561024 47561024 G A ATP10D Missense_Mutation p.R840H 0.35 deleterious(0) probably_damaging(0.999) TCGA-V5-AASW-01 4 47574176 47574176 G A ATP10D Missense_Mutation p.G1057S 0.28 deleterious(0) probably_damaging(0.993) TCGA-V5-AASW-01 4 69978560 69978560 A G UGT2B7 3'UTR 0.20 TCGA-V5-AASW-01 4 92519966 92519966 T G CCSER1 Missense_Mutation p.L821V 0.35 tolerated_low_confidence(0.58) benign(0.002) TCGA-V5-AASW-01 5 148899876 148899876 C T CSNK1A1 Missense_Mutation p.G145S 0.76 deleterious_low_confidence(0) probably_damaging(1) TCGA-V5-AASW-01 5 32724886 32724886 C T NPR3 Silent p.Y284Y 0.81 TCGA-V5-AASW-01 5 35779246 35779246 C A SPEF2 Silent p.R1415R 0.76 TCGA-V5-AASW-01 5 88016144 88016144 G A MEF2C 3'UTR 0.47 TCGA-V5-AASW-01 5 95223094 95223094 T A ELL2 3'UTR 0.56 TCGA-V5-AASW-01 6 102516501 102516501 C A GRIK2 3'UTR 0.13 TCGA-V5-AASW-01 6 137476103 137476103 C T IL22RA2 Silent p.T149T 0.67 TCGA-V5-AASW-01 6 152332850 152332850 A G ESR1 Missense_Mutation p.I386V 0.24 tolerated(1) benign(0.035) TCGA-V5-AASW-01 6 152697593 152697593 C T SYNE1 Missense_Mutation p.A3083T 0.35 possibly_damaging(0.798) TCGA-V5-AASW-01 6 152751290 152751290 C T SYNE1 Missense_Mutation p.C1582Y 0.72 probably_damaging(0.999) TCGA-V5-AASW-01 6 17629455 17629455 G T NUP153 Missense_Mutation p.P992Q 0.57 tolerated(0.2) benign(0.01) TCGA-V5-AASW-01 6 22570022 22570022 G A HDGFL1 Missense_Mutation p.R73H 0.70 deleterious(0) probably_damaging(0.999) TCGA-V5-AASW-01 6 29639195 29639195 C A MOG Intron 0.80 TCGA-V5-AASW-01 6 31430992 31430992 C T HCP5 RNA 0.11 TCGA-V5-AASW-01 6 8015900 8015900 C T BLOC1S5 Silent p.A182A 0.47 TCGA-V5-AASW-01 7 104717849 104717849 C T KMT2E Nonsense_Mutation p.Q367* 0.35 TCGA-V5-AASW-01 7 13935516 13935516 G A ETV1 Missense_Mutation p.P470L 0.13 tolerated(0.28) probably_damaging(0.999) TCGA-V5-AASW-01 7 143080174 143080174 C G ZYX Missense_Mutation p.A261G 0.36 tolerated(0.2) benign(0.077) TCGA-V5-AASW-01 7 26411551 26411551 C G SNX10 Missense_Mutation p.S141C 0.08 deleterious(0) probably_damaging(0.935) TCGA-V5-AASW-01 7 34193773 34193773 T C BMPER 3'UTR 0.49 TCGA-V5-AASW-01 7 43906348 43906348 G A MRPS24 Nonsense_Mutation p.R152* 0.32 TCGA-V5-AASW-01 7 63709499 63709499 G T ZNF679 Missense_Mutation p.A2S 0.37 tolerated_low_confidence(0.09) benign(0.194) TCGA-V5-AASW-01 7 64531299 64531299 C T SNORA22 3'Flank 0.05 TCGA-V5-AASW-01 7 76633620 76633620 G A UPK3B Intron 0.08 TCGA-V5-AASW-01 8 139165415 139165415 T G FAM135B Missense_Mutation p.S435R 0.53 tolerated(0.11) benign(0.303) TCGA-V5-AASW-01 8 142483015 142483015 G A MROH5 3'UTR 0.18 TCGA-V5-AASW-01 8 42958883 42958883 G A POMK Silent p.Q64Q 0.58 TCGA-V5-AASW-01 8 55538983 55538983 G A RP1 Silent p.L847L 0.69 TCGA-V5-AASW-01 8 67488276 67488276 G A MYBL1 Missense_Mutation p.T479I 0.12 deleterious(0.04) probably_damaging(0.99) TCGA-V5-AASW-01 8 67786316 67786316 C T MCMDC2 5'UTR 0.53 TCGA-V5-AASW-01 8 82671449 82671449 T G CHMP4C 3'UTR 0.25 TCGA-V5-AASW-01 9 114989735 114989735 C T PTBP3 Silent p.Q474Q 0.27 TCGA-V5-AASW-01 9 114989791 114989791 C T PTBP3 Missense_Mutation p.D456N 0.31 deleterious(0) probably_damaging(0.954) TCGA-V5-AASW-01 9 114989874 114989874 C A PTBP3 Missense_Mutation p.G428V 0.21 deleterious(0) probably_damaging(0.941) TCGA-V5-AASW-01 9 114989883 114989883 C T PTBP3 Missense_Mutation p.R425K 0.21 tolerated(1) benign(0.001) TCGA-V5-AASW-01 9 132481697 132481697 G A PRRX2 Silent p.Q149Q 0.35 TCGA-V5-AASW-01 9 133932371 133932371 G A LAMC3 Silent p.P665P 0.26 TCGA-V5-AASW-01 9 135906156 135906156 G A GTF3C5 5'Flank 0.55 TCGA-V5-AASW-01 9 137600549 137600549 G A COL5A1 Intron 0.75 TCGA-V5-AASW-01 9 139562807 139562807 C T EGFL7 Missense_Mutation p.R25W 0.12 deleterious(0.03) benign(0.037) TCGA-V5-AASW-01 9 139564780 139564780 C T EGFL7 Missense_Mutation p.T190I 0.54 tolerated(0.16) benign(0.073) TCGA-V5-AASW-01 9 34627840 34627840 C G ARID3C Missense_Mutation p.E58Q 0.10 tolerated(0.07) possibly_damaging(0.727) TCGA-V5-AASW-01 9 40771819 40771819 G T ZNF658 3'UTR 0.65 TCGA-V5-AASW-01 9 4701964 4701964 C T CDC37L1 Missense_Mutation p.T283I 0.06 tolerated(0.18) benign(0.002) TCGA-V5-AASW-01 9 73151067 73151067 C A TRPM3 Missense_Mutation p.E1642D 0.10 tolerated_low_confidence(0.3) benign(0.01) TCGA-V5-AASW-01 9 84609178 84609178 C T SPATA31D1 Missense_Mutation p.R1265C 0.79 tolerated(0.09) benign(0.003) TCGA-V5-AASW-01 9 91653172 91653172 G A SHC3 Silent p.P464P 0.21 TCGA-V5-AASW-01 X 103031855 103031855 C T PLP1 5'UTR 0.32 TCGA-V5-AASW-01 X 117773511 117773511 G A DOCK11 Missense_Mutation p.S1372N 0.37 tolerated(0.15) benign(0.443) TCGA-V5-AASW-01 X 124029838 124029838 C T TENM1 Missense_Mutation p.G157E 0.08 tolerated_low_confidence(0.47) benign(0.105) TCGA-V5-AASW-01 X 148048401 148048401 A G AFF2 Missense_Mutation p.T999A 0.36 tolerated(0.96) benign(0.089) TCGA-V5-AASW-01 X 17750949 17750949 G A NHS 3'UTR 0.15 TCGA-V5-AASW-01 X 71855004 71855004 C G PHKA1 Splice_Site p.X572_splice 0.26 TCGA-V5-AASX-01 10 102763855 102763855 C T LZTS2 Nonsense_Mutation p.R334* 0.11 TCGA-V5-AASX-01 10 102792126 102792126 C T SFXN3 5'UTR 0.12 TCGA-V5-AASX-01 10 105354053 105354053 G A SH3PXD2A 3'UTR 0.16 TCGA-V5-AASX-01 10 111639974 111639974 C T XPNPEP1 Missense_Mutation p.C385Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-V5-AASX-01 10 11330403 11330403 G A CELF2 Silent p.Q288Q 0.17 TCGA-V5-AASX-01 10 135141459 135141459 C A CALY Missense_Mutation p.D66Y 0.06 deleterious(0.01) possibly_damaging(0.726) TCGA-V5-AASX-01 10 13629033 13629033 G A PRPF18 5'UTR 0.28 TCGA-V5-AASX-01 10 25889143 25889143 T G GPR158 3'UTR 0.11 TCGA-V5-AASX-01 10 38466857 38466857 C T RP11-508N22.9 RNA 0.05 TCGA-V5-AASX-01 10 43623765 43623765 G T RET 3'UTR 0.11 TCGA-V5-AASX-01 10 47087562 47087562 T C NPY4R Missense_Mutation p.M260T 0.06 tolerated(0.54) benign(0.008) TCGA-V5-AASX-01 10 50122166 50122166 T C LRRC18 Missense_Mutation p.K12R 0.15 tolerated(0.23) benign(0.199) TCGA-V5-AASX-01 10 50532636 50532636 T G C10orf71 Silent p.P682P 0.23 TCGA-V5-AASX-01 10 70097637 70097637 G A HNRNPH3 Silent p.G45G 0.10 TCGA-V5-AASX-01 10 70138254 70138254 C T RUFY2 Intron 0.13 TCGA-V5-AASX-01 10 71018676 71018676 C T HKDC1 Missense_Mutation p.T726M 0.29 deleterious(0.03) benign(0.017) TCGA-V5-AASX-01 10 72195386 72195386 G A NODAL Missense_Mutation p.R183W 0.11 deleterious(0.01) benign(0.402) TCGA-V5-AASX-01 10 73437309 73437309 C T CDH23 Silent p.D129D 0.05 TCGA-V5-AASX-01 10 75434061 75434061 C A AGAP5 3'UTR 0.06 TCGA-V5-AASX-01 10 95443844 95443844 C T FRA10AC1 Missense_Mutation p.E213K 0.10 tolerated(0.14) benign(0.063) TCGA-V5-AASX-01 10 95518077 95518077 G C LGI1 Missense_Mutation p.R59T 0.05 tolerated(0.38) benign(0.138) TCGA-V5-AASX-01 10 99003913 99003913 C T ARHGAP19 Missense_Mutation p.D333N 0.13 tolerated(0.09) possibly_damaging(0.467) TCGA-V5-AASX-01 11 100126539 100126539 A C CNTN5 Missense_Mutation p.S685R 0.10 deleterious(0.02) benign(0.309) TCGA-V5-AASX-01 11 103048317 103048317 A T DYNC2H1 Missense_Mutation p.L1969F 0.13 probably_damaging(0.991) TCGA-V5-AASX-01 11 107299528 107299528 G A CWF19L2 Missense_Mutation p.A477V 0.12 tolerated(0.13) benign(0.028) TCGA-V5-AASX-01 11 10785713 10785713 G C CTR9 Missense_Mutation p.E417Q 0.09 deleterious(0.01) probably_damaging(0.968) TCGA-V5-AASX-01 11 111594547 111594547 G A SIK2 Silent p.P825P 0.19 TCGA-V5-AASX-01 11 113270849 113270849 G A ANKK1 Missense_Mutation p.V720I 0.07 tolerated(1) benign(0.003) TCGA-V5-AASX-01 11 115045908 115045908 G A CADM1 3'UTR 0.10 TCGA-V5-AASX-01 11 119228536 119228536 G A USP2 Missense_Mutation p.R478C 0.11 deleterious(0) benign(0.03) TCGA-V5-AASX-01 11 120531108 120531108 C T GRIK4 Silent p.I27I 0.08 TCGA-V5-AASX-01 11 132286988 132286988 C A OPCML 3'UTR 0.19 TCGA-V5-AASX-01 11 17798841 17798841 G T KCNC1 Intron 0.14 TCGA-V5-AASX-01 11 30914499 30914499 G A DCDC1 Missense_Mutation p.P1647S 0.09 tolerated(0.16) possibly_damaging(0.803) TCGA-V5-AASX-01 11 32456398 32456398 G A WT1 Missense_Mutation p.S165F 0.15 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-V5-AASX-01 11 5021006 5021006 G A OR51L1 Missense_Mutation p.R265H 0.09 deleterious(0.02) benign(0.017) TCGA-V5-AASX-01 11 5444098 5444098 T G OR51Q1 Missense_Mutation p.I223S 0.17 deleterious(0) probably_damaging(0.984) TCGA-V5-AASX-01 11 55111564 55111565 - A OR4A16 Frame_Shift_Ins p.N298Kfs*5 0.15 TCGA-V5-AASX-01 11 5530157 5530157 A C UBQLN3 Missense_Mutation p.L211R 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-V5-AASX-01 11 56230592 56230592 A C OR5M9 Missense_Mutation p.L96V 0.18 tolerated(0.26) benign(0.051) TCGA-V5-AASX-01 11 6238867 6238867 C T FAM160A2 Missense_Mutation p.R664H 0.23 deleterious(0.01) probably_damaging(0.975) TCGA-V5-AASX-01 11 64591905 64591905 C T CDC42BPG 3'UTR 0.44 TCGA-V5-AASX-01 11 71629946 71629946 C T RP11-849H4.2 Missense_Mutation p.G89S 0.16 tolerated(0.35) benign(0.144) TCGA-V5-AASX-01 11 83676493 83676493 C T DLG2 Missense_Mutation p.E359K 0.10 deleterious(0.04) probably_damaging(0.988) TCGA-V5-AASX-01 11 8414148 8414148 A G STK33 Missense_Mutation p.M485T 0.06 tolerated_low_confidence(0.38) benign(0) TCGA-V5-AASX-01 11 9496117 9496117 G C ZNF143 Missense_Mutation p.E104Q 0.10 deleterious(0) probably_damaging(0.959) TCGA-V5-AASX-01 12 100444952 100444952 C A UHRF1BP1L Missense_Mutation p.V1158L 0.10 tolerated(0.44) benign(0.001) TCGA-V5-AASX-01 12 111886684 111886684 C G SH2B3 3'UTR 0.22 TCGA-V5-AASX-01 12 123471081 123471081 A C PITPNM2 Missense_Mutation p.S1210A 0.39 deleterious(0) probably_damaging(0.994) TCGA-V5-AASX-01 12 130649882 130649882 A C FZD10 3'UTR 0.07 TCGA-V5-AASX-01 12 1399080 1399080 G T ERC1 Missense_Mutation p.K894N 0.14 tolerated(0.08) probably_damaging(0.999) TCGA-V5-AASX-01 12 1995136 1995136 G A CACNA2D4 Nonsense_Mutation p.R355* 0.17 TCGA-V5-AASX-01 12 21355473 21355473 A T SLCO1B1 Missense_Mutation p.Y395F 0.15 tolerated(0.2) benign(0.12) TCGA-V5-AASX-01 12 30906600 30906600 G A CAPRIN2 Missense_Mutation p.A33V 0.44 deleterious_low_confidence(0.01) benign(0) TCGA-V5-AASX-01 12 43826214 43826214 A G ADAMTS20 Missense_Mutation p.F997L 0.08 tolerated(0.77) benign(0.008) TCGA-V5-AASX-01 12 4919722 4919722 C T KCNA6 Missense_Mutation p.P172L 0.15 tolerated(0.08) benign(0.415) TCGA-V5-AASX-01 12 57543467 57543467 G A LRP1 Intron 0.20 TCGA-V5-AASX-01 12 65515009 65515009 G A WIF1 5'UTR 0.18 TCGA-V5-AASX-01 12 6645892 6645892 G A GAPDH Missense_Mutation p.G58S 0.17 deleterious_low_confidence(0.04) possibly_damaging(0.825) TCGA-V5-AASX-01 12 7026211 7026211 G A ENO2 Missense_Mutation p.V84M 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.576) TCGA-V5-AASX-01 12 76448798 76448798 C T NAP1L1 Splice_Site p.X210_splice 0.33 TCGA-V5-AASX-01 12 8391292 8391292 G A RP11-266K4.9 Intron 0.40 TCGA-V5-AASX-01 13 109779715 109779715 G A MYO16 Missense_Mutation p.V1268I 0.13 tolerated(0.08) benign(0) TCGA-V5-AASX-01 13 113699101 113699101 A G MCF2L Intron 0.07 TCGA-V5-AASX-01 13 20593738 20593741 TCTT - ZMYM2 Frame_Shift_Del p.F523* 0.13 TCGA-V5-AASX-01 13 25044067 25044067 C T PARP4 Missense_Mutation p.E671K 0.12 deleterious(0) probably_damaging(0.983) TCGA-V5-AASX-01 13 32731475 32731475 G A FRY Missense_Mutation p.E573K 0.08 deleterious(0.01) possibly_damaging(0.689) TCGA-V5-AASX-01 13 39453061 39453061 G C FREM2 Missense_Mutation p.V2985L 0.15 deleterious(0.02) possibly_damaging(0.675) TCGA-V5-AASX-01 13 41134546 41134546 C T FOXO1 Missense_Mutation p.S361N 0.05 deleterious(0.04) probably_damaging(0.968) TCGA-V5-AASX-01 13 70275649 70275649 A C KLHL1 3'UTR 0.11 TCGA-V5-AASX-01 13 75860859 75860859 G A TBC1D4 3'UTR 0.15 TCGA-V5-AASX-01 13 76430682 76430682 G A LMO7 Missense_Mutation p.E1335K 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.901) TCGA-V5-AASX-01 13 97639174 97639174 G A OXGR1 Silent p.I280I 0.14 TCGA-V5-AASX-01 14 102547886 102547886 C G HSP90AA1 3'UTR 0.09 TCGA-V5-AASX-01 14 105393534 105393534 G A PLD4 Silent p.P19P 0.07 TCGA-V5-AASX-01 14 105418935 105418935 T G AHNAK2 Missense_Mutation p.E951D 0.06 possibly_damaging(0.687) TCGA-V5-AASX-01 14 105420268 105420268 C T AHNAK2 Missense_Mutation p.R507H 0.13 benign(0.042) TCGA-V5-AASX-01 14 20216087 20216087 G T OR4Q3 Silent p.L167L 0.24 TCGA-V5-AASX-01 14 23792618 23792618 A T PABPN1 Missense_Mutation p.E189D 0.11 deleterious(0) probably_damaging(0.992) TCGA-V5-AASX-01 14 23856735 23856735 C A MYH6 Intron 0.13 TCGA-V5-AASX-01 14 26915302 26915302 C A NOVA1 3'UTR 0.09 TCGA-V5-AASX-01 14 31917469 31917469 G C DTD2 Missense_Mutation p.L125V 0.09 tolerated(0.13) benign(0.314) TCGA-V5-AASX-01 14 32621673 32621673 G A ARHGAP5 Missense_Mutation p.V1374I 0.08 tolerated(0.19) benign(0.102) TCGA-V5-AASX-01 14 50190640 50190640 A G KLHDC1 Silent p.Q151Q 0.05 TCGA-V5-AASX-01 14 62536530 62536530 G T SYT16 Nonsense_Mutation p.E245* 0.23 TCGA-V5-AASX-01 14 64953924 64953924 G C ZBTB25 Missense_Mutation p.S342C 0.09 deleterious(0.04) probably_damaging(0.991) TCGA-V5-AASX-01 14 69704507 69704507 G A EXD2 Missense_Mutation p.R503H 0.18 deleterious(0) probably_damaging(0.999) TCGA-V5-AASX-01 14 75520169 75520169 G A ACYP1 Missense_Mutation p.S93L 0.10 deleterious(0.01) benign(0.09) TCGA-V5-AASX-01 14 80328548 80328548 T G NRXN3 3'UTR 0.17 TCGA-V5-AASX-01 14 80328580 80328580 T G NRXN3 3'UTR 0.17 TCGA-V5-AASX-01 14 95234673 95234673 C T GSC 3'UTR 0.13 TCGA-V5-AASX-01 14 96953364 96953364 G A AK7 Missense_Mutation p.V702I 0.08 tolerated(0.63) benign(0.032) TCGA-V5-AASX-01 15 101606295 101606295 G A LRRK1 Missense_Mutation p.G1885S 0.18 tolerated(0.8) benign(0) TCGA-V5-AASX-01 15 101845524 101845524 C T PCSK6 Missense_Mutation p.R949Q 0.13 tolerated(0.13) benign(0.016) TCGA-V5-AASX-01 15 20740173 20740173 A G GOLGA6L6 Missense_Mutation p.I526T 0.10 unknown(0) TCGA-V5-AASX-01 15 25232074 25232074 T G SNORD108 RNA 0.12 TCGA-V5-AASX-01 15 29346543 29346543 C T APBA2 Silent p.H152H 0.41 TCGA-V5-AASX-01 15 30380047 30380047 A C GOLGA8J Intron 0.09 TCGA-V5-AASX-01 15 45007689 45007690 TA - B2M Frame_Shift_Del p.Y46Cfs*10 0.07 TCGA-V5-AASX-01 15 54306773 54306773 A G UNC13C Missense_Mutation p.Q558R 0.12 deleterious_low_confidence(0) benign(0.001) TCGA-V5-AASX-01 15 59383298 59383298 G A RNF111 Missense_Mutation p.R904H 0.08 deleterious(0.03) probably_damaging(0.997) TCGA-V5-AASX-01 15 73590936 73590936 A C NEO1 Silent p.P1383P 0.24 TCGA-V5-AASX-01 15 91034730 91034730 G A IQGAP1 Missense_Mutation p.V1472M 0.12 deleterious(0.01) probably_damaging(0.977) TCGA-V5-AASX-01 16 11785933 11785933 G A TXNDC11 Silent p.T371T 0.08 TCGA-V5-AASX-01 16 18872019 18872019 G A SMG1 Silent p.L1259L 0.09 TCGA-V5-AASX-01 16 2201727 2201727 G A RAB26 Missense_Mutation p.R127H 0.15 tolerated(0.08) probably_damaging(0.999) TCGA-V5-AASX-01 16 28877611 28877611 C T SH2B1 Missense_Mutation p.R66C 0.12 deleterious(0.02) possibly_damaging(0.906) TCGA-V5-AASX-01 16 31193931 31193931 G C FUS Missense_Mutation p.D46H 0.09 deleterious(0.01) unknown(0) TCGA-V5-AASX-01 16 51171162 51171162 G A SALL1 Missense_Mutation p.T1279M 0.06 deleterious(0.03) probably_damaging(0.962) TCGA-V5-AASX-01 16 55513515 55513515 G A MMP2 Missense_Mutation p.A42T 0.11 tolerated(0.66) benign(0) TCGA-V5-AASX-01 16 56228332 56228332 G A GNAO1 Intron 0.19 TCGA-V5-AASX-01 16 61854976 61854976 T C CDH8 Missense_Mutation p.T293A 0.09 tolerated(0.11) benign(0.011) TCGA-V5-AASX-01 16 69148882 69148882 G A HAS3 Missense_Mutation p.A459T 0.12 tolerated(0.15) benign(0.184) TCGA-V5-AASX-01 16 70690565 70690565 G A IL34 Missense_Mutation p.A75T 0.42 tolerated(0.09) benign(0.173) TCGA-V5-AASX-01 16 72094230 72094230 T C HP Missense_Mutation p.L221S 0.04 deleterious(0) probably_damaging(0.994) TCGA-V5-AASX-01 16 75611331 75611331 C T GABARAPL2 3'UTR 0.05 TCGA-V5-AASX-01 16 81209272 81209272 T C PKD1L2 Missense_Mutation p.T97A 0.18 tolerated(0.15) possibly_damaging(0.569) TCGA-V5-AASX-01 16 84230517 84230517 C T ADAD2 Silent p.L645L 0.07 TCGA-V5-AASX-01 16 86371285 86371285 C A LINC00917 RNA 0.08 TCGA-V5-AASX-01 16 88504575 88504575 G C ZNF469 Missense_Mutation p.R3538T 0.15 benign(0.019) TCGA-V5-AASX-01 16 88691110 88691110 G A ZC3H18 Missense_Mutation p.E667K 0.09 tolerated_low_confidence(0.07) unknown(0) TCGA-V5-AASX-01 17 10533739 10533739 C T MYH3 Missense_Mutation p.D1775N 0.30 deleterious(0.03) possibly_damaging(0.707) TCGA-V5-AASX-01 17 12028638 12028638 C T MAP2K4 Nonsense_Mutation p.R281* 0.08 TCGA-V5-AASX-01 17 26495561 26495561 C T NLK Missense_Mutation p.P309S 0.09 deleterious(0) probably_damaging(1) TCGA-V5-AASX-01 17 33690706 33690706 G T SLFN11 Missense_Mutation p.Q41K 0.23 tolerated(1) benign(0.002) TCGA-V5-AASX-01 17 37441733 37441733 C T FBXL20 Silent p.L164L 0.07 TCGA-V5-AASX-01 17 39643973 39643973 C T KRT36 Missense_Mutation p.R239H 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-V5-AASX-01 17 40732697 40732697 G A FAM134C 3'UTR 0.08 TCGA-V5-AASX-01 17 45291180 45291180 G A MYL4 Missense_Mutation p.D51N 0.12 deleterious(0.02) benign(0.17) TCGA-V5-AASX-01 17 59147396 59147396 G C BCAS3 Intron 0.14 TCGA-V5-AASX-01 17 60348791 60348791 T G TBC1D3P2 RNA 0.11 TCGA-V5-AASX-01 17 61904975 61904975 C A FTSJ3 5'UTR 0.14 TCGA-V5-AASX-01 17 67132213 67132213 T C ABCA6 Intron 0.36 TCGA-V5-AASX-01 17 72469942 72469942 G A CD300A Missense_Mutation p.C103Y 0.26 deleterious(0) probably_damaging(1) TCGA-V5-AASX-01 17 72957985 72957985 A C HID1 Missense_Mutation p.F237L 0.09 tolerated(0.16) possibly_damaging(0.629) TCGA-V5-AASX-01 17 7348268 7348268 C A CHRNB1 5'Flank 0.13 TCGA-V5-AASX-01 17 7578202 7578202 A T TP53 Missense_Mutation p.V216E 0.23 deleterious(0) probably_damaging(1) TCGA-V5-AASX-01 17 7909879 7909879 G A GUCY2D Missense_Mutation p.A409T 0.06 deleterious(0.01) benign(0.382) TCGA-V5-AASX-01 17 7917315 7917315 T G GUCY2D Missense_Mutation p.L794R 0.12 tolerated(1) benign(0.015) TCGA-V5-AASX-01 17 8422001 8422001 T G MYH10 Missense_Mutation p.T818P 0.07 probably_damaging(0.998) TCGA-V5-AASX-01 18 25532209 25532209 T G CDH2 Missense_Mutation p.S877R 0.10 deleterious(0) probably_damaging(0.999) TCGA-V5-AASX-01 18 29454467 29454467 G A TRAPPC8 Silent p.L643L 0.10 TCGA-V5-AASX-01 18 42531093 42531093 C T SETBP1 Silent p.L596L 0.10 TCGA-V5-AASX-01 18 55021741 55021741 G A ST8SIA3 Silent p.A96A 0.18 TCGA-V5-AASX-01 18 56652769 56652769 G A ZNF532 3'UTR 0.20 TCGA-V5-AASX-01 18 7774151 7774151 C A PTPRM Silent p.G26G 0.12 TCGA-V5-AASX-01 18 9887595 9887595 C G TXNDC2 Missense_Mutation p.D373E 0.11 tolerated(0.41) benign(0.173) TCGA-V5-AASX-01 19 12739050 12739050 G C ZNF791 Missense_Mutation p.R236T 0.10 deleterious(0.02) probably_damaging(0.999) TCGA-V5-AASX-01 19 1611565 1611565 C T TCF3 3'UTR 0.08 TCGA-V5-AASX-01 19 1816110 1816110 G T REXO1 Missense_Mutation p.H1207Q 0.10 tolerated(0.18) benign(0.19) TCGA-V5-AASX-01 19 18255930 18255930 G A MAST3 Missense_Mutation p.R948Q 0.08 tolerated(0.05) benign(0.007) TCGA-V5-AASX-01 19 19758523 19758523 C A ATP13A1 Missense_Mutation p.R893L 0.22 tolerated(0.11) benign(0.081) TCGA-V5-AASX-01 19 22375873 22375873 C A ZNF676 Missense_Mutation p.E25D 0.15 deleterious(0.04) benign(0.283) TCGA-V5-AASX-01 19 31770618 31770618 G A TSHZ3 Silent p.D27D 0.42 TCGA-V5-AASX-01 19 39061283 39061283 C T RYR1 Missense_Mutation p.L4566F 0.16 possibly_damaging(0.472) TCGA-V5-AASX-01 19 39292410 39292410 C G LGALS4 Missense_Mutation p.Q322H 0.07 tolerated(0.35) benign(0.096) TCGA-V5-AASX-01 19 40408618 40408618 T C FCGBP Silent p.S1407S 0.11 TCGA-V5-AASX-01 19 41183321 41183321 C G NUMBL Missense_Mutation p.E182D 0.08 deleterious(0.03) possibly_damaging(0.768) TCGA-V5-AASX-01 19 42874502 42874502 C T MEGF8 Silent p.D2265D 0.14 TCGA-V5-AASX-01 19 46313896 46313896 C T RSPH6A Missense_Mutation p.G285S 0.17 tolerated(0.62) benign(0.009) TCGA-V5-AASX-01 19 49636266 49636266 G A PPFIA3 Silent p.A296A 0.06 TCGA-V5-AASX-01 19 5240212 5240212 C T PTPRS Missense_Mutation p.E568K 0.10 tolerated(0.63) possibly_damaging(0.574) TCGA-V5-AASX-01 19 53994532 53994532 A G ZNF813 Missense_Mutation p.H349R 0.15 deleterious(0) probably_damaging(0.997) TCGA-V5-AASX-01 19 56303726 56303726 G A NLRP11 Silent p.Y818Y 0.05 TCGA-V5-AASX-01 19 56904729 56904729 T C ZNF582 Intron 0.09 TCGA-V5-AASX-01 19 57134062 57134062 C T ZNF71 Silent p.G469G 0.26 TCGA-V5-AASX-01 19 57744904 57744904 A C AURKC Missense_Mutation p.N171T 0.10 deleterious(0) probably_damaging(0.993) TCGA-V5-AASX-01 19 58238833 58238833 G A ZNF671 Nonsense_Mutation p.R22* 0.08 TCGA-V5-AASX-01 19 58564838 58564838 G A ZSCAN1 Missense_Mutation p.E216K 0.12 tolerated(0.24) benign(0.368) TCGA-V5-AASX-01 1 10364491 10364491 A T KIF1B Intron 0.38 TCGA-V5-AASX-01 1 14106905 14106905 A C PRDM2 Missense_Mutation p.Q872P 0.13 benign(0.143) TCGA-V5-AASX-01 1 149754533 149754533 G A HIST2H2BF 3'UTR 0.09 TCGA-V5-AASX-01 1 150783594 150783594 C T ARNT 3'UTR 0.07 TCGA-V5-AASX-01 1 152883117 152883117 C A IVL Missense_Mutation p.Q282K 0.32 deleterious(0) probably_damaging(0.959) TCGA-V5-AASX-01 1 155255005 155255005 C T HCN3 Missense_Mutation p.T380M 0.07 tolerated(1) benign(0.04) TCGA-V5-AASX-01 1 155288467 155288467 G A FDPS Silent p.Q232Q 0.14 TCGA-V5-AASX-01 1 158150855 158150855 C T CD1D 5'UTR 0.12 TCGA-V5-AASX-01 1 158390342 158390342 G A OR10K2 Silent p.L105L 0.08 TCGA-V5-AASX-01 1 158576411 158576411 C A OR10Z1 Silent p.L61L 0.10 TCGA-V5-AASX-01 1 161160863 161160864 CT - ADAMTS4 3'UTR 0.14 TCGA-V5-AASX-01 1 161519692 161519692 T C FCGR3A 5'UTR 0.06 TCGA-V5-AASX-01 1 168065938 168065938 G A GPR161 Missense_Mutation p.P323S 0.08 tolerated(0.18) benign(0.09) TCGA-V5-AASX-01 1 169762874 169762874 C T METTL18 5'UTR 0.09 TCGA-V5-AASX-01 1 172357768 172357768 G A DNM3 Missense_Mutation p.A781T 0.07 tolerated_low_confidence(0.56) benign(0.001) TCGA-V5-AASX-01 1 175362979 175362979 C A TNR Silent p.V431V 0.28 TCGA-V5-AASX-01 1 176983980 176983980 C A ASTN1 Missense_Mutation p.K490N 0.09 deleterious(0.01) possibly_damaging(0.448) TCGA-V5-AASX-01 1 183112736 183112736 A T LAMC1 3'UTR 0.09 TCGA-V5-AASX-01 1 185069848 185069848 C T RNF2 3'UTR 0.05 TCGA-V5-AASX-01 1 186088917 186088917 C G HMCN1 Silent p.V3999V 0.07 TCGA-V5-AASX-01 1 186097328 186097328 C A HMCN1 Nonsense_Mutation p.S4270* 0.18 TCGA-V5-AASX-01 1 200817241 200817241 C A CAMSAP2 Silent p.I448I 0.07 TCGA-V5-AASX-01 1 202710527 202710527 C G KDM5B Missense_Mutation p.W971C 0.06 deleterious(0.01) probably_damaging(0.988) TCGA-V5-AASX-01 1 203277384 203277384 C G BTG2 3'UTR 0.14 TCGA-V5-AASX-01 1 203690434 203690434 G A ATP2B4 Missense_Mutation p.R903H 0.07 deleterious(0.01) benign(0.063) TCGA-V5-AASX-01 1 206632219 206632219 C T SRGAP2 Missense_Mutation p.R834W 0.12 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-V5-AASX-01 1 210948725 210948725 G A KCNH1 Missense_Mutation p.R693W 0.08 deleterious(0) probably_damaging(0.974) TCGA-V5-AASX-01 1 216369967 216369967 T G USH2A Missense_Mutation p.K1393N 0.11 benign(0.158) TCGA-V5-AASX-01 1 22033007 22033007 T C USP48 Missense_Mutation p.N722D 0.14 tolerated(0.6) benign(0.008) TCGA-V5-AASX-01 1 225152209 225152209 T G DNAH14 Missense_Mutation p.N132K 0.08 deleterious(0) benign(0.4) TCGA-V5-AASX-01 1 240656362 240656362 G A GREM2 Silent p.P138P 0.14 TCGA-V5-AASX-01 1 245850994 245850994 C T KIF26B Missense_Mutation p.T1570I 0.10 deleterious(0.02) unknown(0) TCGA-V5-AASX-01 1 245865900 245865900 C T KIF26B Missense_Mutation p.R2107C 0.15 deleterious_low_confidence(0.02) unknown(0) TCGA-V5-AASX-01 1 245866183 245866183 A G KIF26B 3'UTR 0.09 TCGA-V5-AASX-01 1 27736341 27736341 G A WASF2 Missense_Mutation p.P395L 0.24 tolerated(0.67) unknown(0) TCGA-V5-AASX-01 1 27875440 27875440 C T AHDC1 Missense_Mutation p.V1063I 0.12 tolerated(0.1) benign(0.198) TCGA-V5-AASX-01 1 28282257 28282257 C T SMPDL3B Silent p.F251F 0.24 TCGA-V5-AASX-01 1 3650049 3650049 G A TP73 3'UTR 0.09 TCGA-V5-AASX-01 1 38032583 38032583 C T GNL2 Missense_Mutation p.R690Q 0.10 tolerated(0.3) benign(0.002) TCGA-V5-AASX-01 1 41236499 41236499 G A NFYC Silent p.%3D 0.14 TCGA-V5-AASX-01 1 4772620 4772620 G A AJAP1 Silent p.T230T 0.19 TCGA-V5-AASX-01 1 53980299 53980299 C T GLIS1 Missense_Mutation p.G453R 0.47 tolerated(0.21) benign(0.024) TCGA-V5-AASX-01 1 62718879 62718879 C T KANK4 Missense_Mutation p.V848I 0.16 tolerated(0.08) benign(0.022) TCGA-V5-AASX-01 1 66102029 66102029 T G LEPR Silent p.L943L 0.20 TCGA-V5-AASX-01 1 86591748 86591748 C T COL24A1 Missense_Mutation p.E91K 0.17 deleterious(0.04) benign(0.386) TCGA-V5-AASX-01 1 89449059 89449059 T A RBMXL1 Nonsense_Mutation p.R151* 0.11 TCGA-V5-AASX-01 1 91381464 91381467 AAGT - ZNF644 3'UTR 0.19 TCGA-V5-AASX-01 20 23066727 23066727 C T CD93 Missense_Mutation p.A35T 0.10 tolerated(0.07) probably_damaging(1) TCGA-V5-AASX-01 20 23729656 23729656 C G CST1 Missense_Mutation p.Q113H 0.11 tolerated(0.15) probably_damaging(0.991) TCGA-V5-AASX-01 20 308323 308323 G A SOX12 3'UTR 0.11 TCGA-V5-AASX-01 20 3631515 3631515 T C ATRN 3'UTR 0.19 TCGA-V5-AASX-01 20 36888908 36888908 C T KIAA1755 5'UTR 0.10 TCGA-V5-AASX-01 20 39986652 39986652 A C LPIN3 Missense_Mutation p.S724R 0.11 deleterious(0) probably_damaging(0.996) TCGA-V5-AASX-01 20 44686293 44686293 G A SLC12A5 3'UTR 0.14 TCGA-V5-AASX-01 20 58330337 58330337 G T PHACTR3 Missense_Mutation p.Q153H 0.28 tolerated(0.09) benign(0.229) TCGA-V5-AASX-01 20 61292523 61292523 C T SLCO4A1 Missense_Mutation p.P373S 0.10 deleterious(0.01) probably_damaging(0.98) TCGA-V5-AASX-01 20 61444884 61444884 G A OGFR Silent p.S639S 0.18 TCGA-V5-AASX-01 20 62730060 62730060 C T OPRL1 Missense_Mutation p.R341W 0.09 deleterious(0.02) benign(0.28) TCGA-V5-AASX-01 21 10862666 10862666 G A IGHV1OR21-1 Silent p.A15A 0.24 TCGA-V5-AASX-01 21 10943021 10943021 C A TPTE Splice_Site p.X189_splice 0.08 TCGA-V5-AASX-01 21 31062161 31062161 T A GRIK1 Missense_Mutation p.D144V 0.17 deleterious(0) probably_damaging(0.997) TCGA-V5-AASX-01 21 31709636 31709636 T G KRTAP27-1 Missense_Mutation p.Q117H 0.14 tolerated(0.05) possibly_damaging(0.821) TCGA-V5-AASX-01 21 31709675 31709675 A T KRTAP27-1 Missense_Mutation p.S104R 0.19 tolerated(0.23) benign(0.036) TCGA-V5-AASX-01 21 45929171 45929171 C G TSPEAR Missense_Mutation p.Q555H 0.16 tolerated(0.19) benign(0.003) TCGA-V5-AASX-01 21 47536710 47536710 C T COL6A2 Silent p.N327N 0.08 TCGA-V5-AASX-01 22 27012261 27012261 G A CRYBB1 Missense_Mutation p.S8L 0.16 tolerated_low_confidence(0.24) benign(0) TCGA-V5-AASX-01 22 32546459 32546459 G A C22orf42 Silent p.V167V 0.09 TCGA-V5-AASX-01 22 37457163 37457163 C T KCTD17 Intron 0.16 TCGA-V5-AASX-01 22 39883517 39883517 G A MGAT3 Silent p.P55P 0.08 TCGA-V5-AASX-01 22 39909685 39909685 G A MIEF1 Missense_Mutation p.R250H 0.10 deleterious(0) probably_damaging(0.999) TCGA-V5-AASX-01 22 41753785 41753785 G A ZC3H7B 3'UTR 0.08 TCGA-V5-AASX-01 22 43089737 43089737 G T A4GALT Missense_Mutation p.P74H 0.17 deleterious(0.04) benign(0.01) TCGA-V5-AASX-01 22 45802390 45802391 - TTG SMC1B In_Frame_Ins p.K188_K189insT 0.11 TCGA-V5-AASX-01 22 50704912 50704912 C T MAPK11 Intron 0.06 TCGA-V5-AASX-01 22 51183125 51183125 C T ACR Silent p.S252S 0.08 TCGA-V5-AASX-01 2 10269604 10269604 G A RRM2 3'UTR 0.10 TCGA-V5-AASX-01 2 103374910 103374910 A T TMEM182 5'Flank 0.06 TCGA-V5-AASX-01 2 120443309 120443309 G A TMEM177 3'Flank 0.06 TCGA-V5-AASX-01 2 125192143 125192143 G A CNTNAP5 Silent p.V204V 0.07 TCGA-V5-AASX-01 2 128364959 128364959 G T MYO7B Missense_Mutation p.G868V 0.13 deleterious(0) probably_damaging(1) TCGA-V5-AASX-01 2 130681240 130681240 G A AC079776.3 Intron 0.12 TCGA-V5-AASX-01 2 131519854 131519854 C T AMER3 Missense_Mutation p.A70V 0.10 tolerated(0.24) benign(0.022) TCGA-V5-AASX-01 2 132290491 132290491 G A CCDC74A Missense_Mutation p.E311K 0.14 deleterious(0.04) benign(0.425) TCGA-V5-AASX-01 2 141110556 141110556 A G LRP1B Silent p.N3872N 0.10 TCGA-V5-AASX-01 2 145156009 145156009 G T ZEB2 Silent p.T915T 0.10 TCGA-V5-AASX-01 2 166846822 166846822 G A SCN1A 3'UTR 0.08 TCGA-V5-AASX-01 2 168101667 168101667 A T XIRP2 Missense_Mutation p.Q1255H 0.13 benign(0.132) TCGA-V5-AASX-01 2 170007486 170007486 A G LRP2 Missense_Mutation p.L4171P 0.05 probably_damaging(1) TCGA-V5-AASX-01 2 179605249 179605249 T G TTN Missense_Mutation p.K4237N 0.14 TCGA-V5-AASX-01 2 179730546 179730546 C T CCDC141 Missense_Mutation p.R891Q 0.06 tolerated(0.27) benign(0.008) TCGA-V5-AASX-01 2 18770734 18770734 T - NT5C1B Frame_Shift_Del p.M1? 0.09 TCGA-V5-AASX-01 2 211447374 211447374 C A CPS1 Missense_Mutation p.Q194K 0.07 tolerated(0.37) benign(0.009) TCGA-V5-AASX-01 2 21231367 21231367 A C APOB Silent p.A2791A 0.27 TCGA-V5-AASX-01 2 215819997 215819997 A T ABCA12 Missense_Mutation p.F2108I 0.13 deleterious(0.01) probably_damaging(0.99) TCGA-V5-AASX-01 2 222347086 222347086 G A EPHA4 Missense_Mutation p.T435I 0.11 deleterious(0.01) benign(0.034) TCGA-V5-AASX-01 2 233546386 233546386 G A EFHD1 Missense_Mutation p.R226H 0.10 deleterious(0.01) benign(0.391) TCGA-V5-AASX-01 2 234581373 234581373 G A UGT1A9 Missense_Mutation p.V265M 0.08 deleterious(0.03) possibly_damaging(0.627) TCGA-V5-AASX-01 2 242617947 242617947 G A DTYMK Missense_Mutation p.R150C 0.16 deleterious(0) probably_damaging(0.951) TCGA-V5-AASX-01 2 25016736 25016736 C G CENPO 5'UTR 0.07 TCGA-V5-AASX-01 2 30142898 30142898 C T ALK Missense_Mutation p.A210T 0.08 deleterious_low_confidence(0) benign(0.413) TCGA-V5-AASX-01 2 32476285 32476285 G A NLRC4 Silent p.L216L 0.12 TCGA-V5-AASX-01 2 37255142 37255142 G A HEATR5B Silent p.I1259I 0.08 TCGA-V5-AASX-01 2 37872643 37872643 C T CDC42EP3 3'UTR 0.14 TCGA-V5-AASX-01 2 48698303 48698303 C T PPP1R21 Silent p.I325I 0.11 TCGA-V5-AASX-01 2 50147566 50147566 T G NRXN1 3'UTR 0.24 TCGA-V5-AASX-01 2 69240707 69240707 G A ANTXR1 Missense_Mutation p.A26T 0.11 tolerated(0.52) benign(0.005) TCGA-V5-AASX-01 2 77746393 77746393 A C LRRTM4 Missense_Mutation p.F201C 0.10 deleterious(0) probably_damaging(0.982) TCGA-V5-AASX-01 2 90198976 90198976 G A IGKV1D-12 Missense_Mutation p.R46Q 0.28 tolerated(0.45) benign(0.025) TCGA-V5-AASX-01 2 99172180 99172180 G T INPP4A Missense_Mutation p.W582C 0.25 tolerated(0.14) probably_damaging(0.998) TCGA-V5-AASX-01 3 109129037 109129037 C T RP11-702L6.4 RNA 0.14 TCGA-V5-AASX-01 3 128720904 128720904 T C EFCC1 Missense_Mutation p.F145L 0.29 tolerated(0.07) probably_damaging(0.995) TCGA-V5-AASX-01 3 134090252 134090252 C T AMOTL2 Silent p.S8S 0.10 TCGA-V5-AASX-01 3 147121979 147121979 T G ZIC4 5'UTR 0.15 TCGA-V5-AASX-01 3 179320455 179320455 C T MRPL47 Missense_Mutation p.E77K 0.09 tolerated(0.62) benign(0.034) TCGA-V5-AASX-01 3 185975700 185975700 A C DGKG Missense_Mutation p.F485V 0.13 deleterious(0.01) probably_damaging(0.981) TCGA-V5-AASX-01 3 193853982 193853982 T A HES1 5'UTR 0.13 TCGA-V5-AASX-01 3 194790544 194790544 C T XXYLT1 Missense_Mutation p.R361K 0.09 tolerated(0.38) benign(0.078) TCGA-V5-AASX-01 3 25502759 25502759 A G RARB Missense_Mutation p.Y78C 0.06 deleterious(0) probably_damaging(0.99) TCGA-V5-AASX-01 3 45266393 45266393 G C TMEM158 3'UTR 0.37 TCGA-V5-AASX-01 3 45637430 45637430 G C LIMD1 Silent p.S353S 0.07 TCGA-V5-AASX-01 3 46721932 46721932 C T ALS2CL Silent p.A512A 0.07 TCGA-V5-AASX-01 3 4712438 4712438 G C ITPR1 Missense_Mutation p.E663Q 0.15 tolerated(0.13) benign(0.024) TCGA-V5-AASX-01 3 49457752 49457752 G A AMT Silent p.N121N 0.14 TCGA-V5-AASX-01 3 50325616 50325616 C T IFRD2 3'UTR 0.13 TCGA-V5-AASX-01 3 50388920 50388920 C T XXcos-LUCA11.5 Missense_Mutation p.S19F 0.23 tolerated_low_confidence(0.12) unknown(0) TCGA-V5-AASX-01 3 52550232 52550232 C T STAB1 Silent p.R1374R 0.09 TCGA-V5-AASX-01 3 64082647 64082647 C G PRICKLE2 3'UTR 0.10 TCGA-V5-AASX-01 3 77623656 77623656 C T ROBO2 Missense_Mutation p.R676C 0.15 deleterious(0.01) probably_damaging(0.911) TCGA-V5-AASX-01 3 79067671 79067671 C T ROBO1 Intron 0.10 TCGA-V5-AASX-01 3 81720028 81720028 C T GBE1 Silent p.Q130Q 0.13 TCGA-V5-AASX-01 4 123332394 123332394 T G ADAD1 Missense_Mutation p.L289R 0.21 deleterious(0) probably_damaging(1) TCGA-V5-AASX-01 4 147561444 147561444 G A POU4F2 Silent p.A238A 0.08 TCGA-V5-AASX-01 4 164449887 164449887 C T MARCH1 3'UTR 0.10 TCGA-V5-AASX-01 4 16504719 16504719 G A LDB2 Intron 0.09 TCGA-V5-AASX-01 4 165962598 165962598 C T TRIM60 Silent p.S458S 0.14 TCGA-V5-AASX-01 4 184615821 184615821 C T TRAPPC11 Missense_Mutation p.S858F 0.09 deleterious(0.02) probably_damaging(0.951) TCGA-V5-AASX-01 4 186427782 186427782 G A PDLIM3 Silent p.P229P 0.16 TCGA-V5-AASX-01 4 53461424 53461424 G A USP46 3'UTR 0.10 TCGA-V5-AASX-01 4 56884024 56884024 G C CEP135 Splice_Site p.X1004_splice 0.24 TCGA-V5-AASX-01 4 66356133 66356133 C T EPHA5 Missense_Mutation p.R455Q 0.14 tolerated(0.29) benign(0.009) TCGA-V5-AASX-01 4 71265050 71265050 C T PROL1 Silent p.F16F 0.11 TCGA-V5-AASX-01 4 71889385 71889385 G A DCK Missense_Mutation p.E171K 0.10 tolerated(0.58) benign(0.143) TCGA-V5-AASX-01 5 112175673 112175674 AA - APC Frame_Shift_Del p.K1462Efs*6 0.19 TCGA-V5-AASX-01 5 11384850 11384850 C T CTNND2 Silent p.A368A 0.22 TCGA-V5-AASX-01 5 140175718 140175718 C T PCDHA2 Missense_Mutation p.T390M 0.15 tolerated_low_confidence(0.1) benign(0.275) TCGA-V5-AASX-01 5 140530476 140530476 C T PCDHB6 Missense_Mutation p.A213V 0.15 deleterious(0) probably_damaging(0.959) TCGA-V5-AASX-01 5 140605446 140605446 G A PCDHB14 Missense_Mutation p.R790Q 0.07 tolerated_low_confidence(0.23) benign(0.002) TCGA-V5-AASX-01 5 140744135 140744135 C T PCDHGA5 Nonsense_Mutation p.R80* 0.15 TCGA-V5-AASX-01 5 140755519 140755519 G A PCDHGA6 Silent p.T623T 0.09 TCGA-V5-AASX-01 5 170883662 170883662 G A FGF18 Silent p.P159P 0.12 TCGA-V5-AASX-01 5 175934527 175934527 A T FAF2 3'UTR 0.14 TCGA-V5-AASX-01 5 176733460 176733460 G A PRELID1 Silent p.K183K 0.06 TCGA-V5-AASX-01 5 178540957 178540957 G A ADAMTS2 Nonsense_Mutation p.R1183* 0.07 TCGA-V5-AASX-01 5 26915774 26915774 A C CDH9 Missense_Mutation p.L163V 0.46 tolerated(0.22) benign(0) TCGA-V5-AASX-01 5 32790135 32790135 T C NPR3 3'UTR 0.39 TCGA-V5-AASX-01 5 33989465 33989465 C A AMACR Silent p.V294V 0.09 TCGA-V5-AASX-01 5 34796083 34796083 C A RAI14 Silent p.L72L 0.09 TCGA-V5-AASX-01 5 34933927 34933927 T A DNAJC21 Missense_Mutation p.N35K 0.14 deleterious(0) probably_damaging(0.991) TCGA-V5-AASX-01 5 7827486 7827486 C T ADCY2 3'UTR 0.22 TCGA-V5-AASX-01 6 109867151 109867151 G A AK9 Silent p.N1048N 0.09 TCGA-V5-AASX-01 6 118588242 118588242 G A SLC35F1 Missense_Mutation p.G188S 0.08 tolerated(0.06) possibly_damaging(0.899) TCGA-V5-AASX-01 6 145173990 145173990 C T UTRN 3'UTR 0.14 TCGA-V5-AASX-01 6 148865205 148865205 G A SASH1 Missense_Mutation p.E867K 0.14 tolerated_low_confidence(0.07) benign(0.05) TCGA-V5-AASX-01 6 154360312 154360312 G C OPRM1 Missense_Mutation p.R6T 0.18 unknown(0) TCGA-V5-AASX-01 6 160471608 160471608 C T IGF2R Missense_Mutation p.S873L 0.07 deleterious(0) possibly_damaging(0.819) TCGA-V5-AASX-01 6 26043546 26043546 C T HIST1H2BB Missense_Mutation p.E114K 0.08 tolerated_low_confidence(0.07) benign(0.003) TCGA-V5-AASX-01 6 27799259 27799259 G A HIST1H4K Missense_Mutation p.A16V 0.06 deleterious(0.04) unknown(0) TCGA-V5-AASX-01 6 28116382 28116382 G A ZKSCAN8 Missense_Mutation p.R66Q 0.18 tolerated(0.65) benign(0.023) TCGA-V5-AASX-01 6 28227442 28227442 G A NKAPL Missense_Mutation p.R98H 0.09 tolerated(1) unknown(0) TCGA-V5-AASX-01 6 31323208 31323208 C A HLA-B Nonsense_Mutation p.G261* 0.10 TCGA-V5-AASX-01 6 348210 348210 G A DUSP22 Missense_Mutation p.C124Y 0.11 tolerated(0.68) probably_damaging(1) TCGA-V5-AASX-01 6 37618132 37618132 G A MDGA1 Silent p.R454R 0.05 TCGA-V5-AASX-01 6 38718294 38718294 G A DNAH8 Missense_Mutation p.E229K 0.07 probably_damaging(1) TCGA-V5-AASX-01 6 45515366 45515366 C T RUNX2 3'UTR 0.19 TCGA-V5-AASX-01 6 62995779 62995779 C T KHDRBS2 Silent p.S25S 0.12 TCGA-V5-AASX-01 6 80631343 80631343 T G ELOVL4 Missense_Mutation p.Q180H 0.08 deleterious(0) probably_damaging(0.984) TCGA-V5-AASX-01 6 82924426 82924426 G C IBTK Silent p.L574L 0.07 TCGA-V5-AASX-01 6 83847209 83847209 C T DOPEY1 Nonsense_Mutation p.Q1150* 0.11 TCGA-V5-AASX-01 6 87925714 87925714 G - ZNF292 Frame_Shift_Del p.A88Pfs*12 0.19 TCGA-V5-AASX-01 6 89614444 89614444 C T RNGTT Missense_Mutation p.R225Q 0.11 tolerated(0.3) benign(0.002) TCGA-V5-AASX-01 6 90642385 90642385 C T BACH2 Silent p.A756A 0.15 TCGA-V5-AASX-01 7 100403299 100403299 T A EPHB4 Missense_Mutation p.E834D 0.07 tolerated(0.18) benign(0.16) TCGA-V5-AASX-01 7 100675650 100675650 C T MUC17 Missense_Mutation p.T318M 0.12 benign(0.035) TCGA-V5-AASX-01 7 100806935 100806936 CT - VGF Frame_Shift_Del p.R397Gfs*60 0.16 TCGA-V5-AASX-01 7 102938093 102938093 A C PMPCB Intron 0.12 TCGA-V5-AASX-01 7 111624408 111624408 C T DOCK4 Missense_Mutation p.A168T 0.13 tolerated(0.4) benign(0.047) TCGA-V5-AASX-01 7 113517641 113517641 T C PPP1R3A 3'UTR 0.13 TCGA-V5-AASX-01 7 126542687 126542687 T G GRM8 Missense_Mutation p.R355S 0.04 deleterious(0) possibly_damaging(0.578) TCGA-V5-AASX-01 7 127668154 127668154 A G LRRC4 3'UTR 0.05 TCGA-V5-AASX-01 7 141176927 141176927 C T TMEM178B 3'UTR 0.17 TCGA-V5-AASX-01 7 148700196 148700196 T G PDIA4 3'UTR 0.13 TCGA-V5-AASX-01 7 1498894 1498894 G A MICALL2 Silent p.I23I 0.13 TCGA-V5-AASX-01 7 26225093 26225093 C T NFE2L3 Missense_Mutation p.A592V 0.07 deleterious(0.02) probably_damaging(0.99) TCGA-V5-AASX-01 7 37955833 37955833 G A SFRP4 Missense_Mutation p.R103C 0.09 deleterious(0) probably_damaging(0.999) TCGA-V5-AASX-01 7 38370189 38370189 C A TRGV8 Missense_Mutation p.A37S 0.14 deleterious(0.05) probably_damaging(0.977) TCGA-V5-AASX-01 7 44099013 44099013 G A DBNL Missense_Mutation p.R308K 0.10 tolerated(0.9) benign(0.003) TCGA-V5-AASX-01 7 44612214 44612216 AAG - DDX56 In_Frame_Del p.L171del 0.10 TCGA-V5-AASX-01 7 45957003 45957003 C T IGFBP3 Missense_Mutation p.G153S 0.20 tolerated(0.72) benign(0.032) TCGA-V5-AASX-01 7 48619943 48619943 C T ABCA13 Silent p.R4826R 0.23 TCGA-V5-AASX-01 7 6006528 6006528 C T RSPH10B Missense_Mutation p.E74K 0.06 deleterious(0) probably_damaging(0.969) TCGA-V5-AASX-01 7 63538841 63538841 A G ZNF727 Missense_Mutation p.R472G 0.11 tolerated(0.12) benign(0.008) TCGA-V5-AASX-01 7 6631456 6631456 G C C7orf26 Silent p.V124V 0.09 TCGA-V5-AASX-01 7 82584289 82584289 T A PCLO Nonsense_Mutation p.R1994* 0.16 TCGA-V5-AASX-01 7 84727257 84727257 A T SEMA3D Missense_Mutation p.I59N 0.15 tolerated(0.31) benign(0.086) TCGA-V5-AASX-01 7 88962746 88962746 T G ZNF804B Missense_Mutation p.I150M 0.08 deleterious(0) possibly_damaging(0.889) TCGA-V5-AASX-01 7 94295428 94295428 G A PEG10 3'UTR 0.08 TCGA-V5-AASX-01 7 95625347 95625347 T G DYNC1I1 Missense_Mutation p.F328V 0.13 deleterious(0) probably_damaging(0.989) TCGA-V5-AASX-01 7 97860397 97860397 G A TECPR1 Missense_Mutation p.R720W 0.06 tolerated(0.07) probably_damaging(0.999) TCGA-V5-AASX-01 7 98550994 98550994 G A TRRAP Missense_Mutation p.G1883R 0.18 probably_damaging(1) TCGA-V5-AASX-01 8 110986334 110986334 T C KCNV1 Missense_Mutation p.N95S 0.17 tolerated(1) benign(0.285) TCGA-V5-AASX-01 8 11162418 11162418 C T MTMR9 Silent p.V162V 0.23 TCGA-V5-AASX-01 8 113249500 113249500 A C CSMD3 Missense_Mutation p.L3516V 0.11 deleterious(0.02) benign(0.023) TCGA-V5-AASX-01 8 11996159 11996159 G A USP17L2 Silent p.L37L 0.07 TCGA-V5-AASX-01 8 120608164 120608164 G T ENPP2 Missense_Mutation p.P351T 0.16 deleterious(0) possibly_damaging(0.503) TCGA-V5-AASX-01 8 121382711 121382711 G A COL14A1 Intron 0.14 TCGA-V5-AASX-01 8 12595527 12595527 G A LONRF1 Missense_Mutation p.L364F 0.18 tolerated(0.7) benign(0.002) TCGA-V5-AASX-01 8 126445713 126445713 G A TRIB1 Missense_Mutation p.R172Q 0.10 deleterious(0) possibly_damaging(0.608) TCGA-V5-AASX-01 8 127565206 127565206 G C FAM84B 3'UTR 0.08 TCGA-V5-AASX-01 8 127565233 127565233 G C FAM84B 3'UTR 0.10 TCGA-V5-AASX-01 8 133899106 133899106 T G TG Missense_Mutation p.F497V 0.14 deleterious(0.02) possibly_damaging(0.743) TCGA-V5-AASX-01 8 143563035 143563035 G A BAI1 Missense_Mutation p.R698Q 0.16 deleterious(0.04) possibly_damaging(0.553) TCGA-V5-AASX-01 8 144662317 144662317 G A EEF1D Silent p.D590D 0.19 TCGA-V5-AASX-01 8 144662347 144662347 C G EEF1D Silent p.L580L 0.10 TCGA-V5-AASX-01 8 145135027 145135027 G A EXOSC4 Missense_Mutation p.R118H 0.15 tolerated(0.08) benign(0.29) TCGA-V5-AASX-01 8 1951354 1951354 C T KBTBD11 3'UTR 0.11 TCGA-V5-AASX-01 8 19687983 19687983 C T INTS10 Missense_Mutation p.L403F 0.10 tolerated(0.07) possibly_damaging(0.805) TCGA-V5-AASX-01 8 25701897 25701897 C T EBF2 3'UTR 0.14 TCGA-V5-AASX-01 8 36780046 36780046 G T KCNU1 Nonsense_Mutation p.G879* 0.11 TCGA-V5-AASX-01 8 39114802 39114802 T G ADAM32 Missense_Mutation p.V701G 0.18 deleterious(0.03) benign(0.007) TCGA-V5-AASX-01 8 41512500 41512500 C T ANK1 3'Flank 0.13 TCGA-V5-AASX-01 8 64124371 64124371 A T YTHDF3 3'UTR 0.06 TCGA-V5-AASX-01 8 69020462 69020462 T G PREX2 Missense_Mutation p.V945G 0.09 deleterious(0) probably_damaging(0.994) TCGA-V5-AASX-01 8 70515465 70515465 C T SULF1 Missense_Mutation p.T367M 0.08 deleterious(0) probably_damaging(1) TCGA-V5-AASX-01 8 8643161 8643161 A T MFHAS1 3'UTR 0.07 TCGA-V5-AASX-01 8 95850822 95850822 T G INTS8 Missense_Mutation p.I331M 0.08 tolerated(0.18) benign(0.094) TCGA-V5-AASX-01 9 104075106 104075106 G A LPPR1 Silent p.T221T 0.12 TCGA-V5-AASX-01 9 111681124 111681124 G A IKBKAP Missense_Mutation p.P236L 0.11 deleterious(0.04) benign(0.098) TCGA-V5-AASX-01 9 111970305 111970305 T C EPB41L4B Missense_Mutation p.K593E 0.07 deleterious(0) probably_damaging(0.917) TCGA-V5-AASX-01 9 112711379 112711379 C A PALM2-AKAP2 Intron 0.29 TCGA-V5-AASX-01 9 112899486 112899486 C G PALM2-AKAP2 Missense_Mutation p.F554L 0.06 deleterious(0.02) possibly_damaging(0.519) TCGA-V5-AASX-01 9 115652626 115652626 C T SLC46A2 Silent p.S112S 0.14 TCGA-V5-AASX-01 9 116038922 116038922 G T PRPF4 Missense_Mutation p.R42L 0.23 deleterious(0.01) benign(0.185) TCGA-V5-AASX-01 9 119162350 119162350 A C PAPPA-AS1 5'UTR 0.15 TCGA-V5-AASX-01 9 119164127 119164127 A G PAPPA 3'UTR 0.12 TCGA-V5-AASX-01 9 123618351 123618351 G A PHF19 3'UTR 0.22 TCGA-V5-AASX-01 9 125486311 125486311 C G OR1L4 Missense_Mutation p.L15V 0.09 deleterious(0) possibly_damaging(0.529) TCGA-V5-AASX-01 9 125652614 125652614 C A RC3H2 Missense_Mutation p.R187L 0.11 deleterious(0) probably_damaging(0.953) TCGA-V5-AASX-01 9 133787269 133787270 - A FIBCD1 Frame_Shift_Ins p.Q286Sfs*54 0.12 TCGA-V5-AASX-01 9 134397474 134397474 C T POMT1 Silent p.A644A 0.12 TCGA-V5-AASX-01 9 135984057 135984057 C T RALGDS Intron 0.08 TCGA-V5-AASX-01 9 138439763 138439763 C T OBP2A Silent p.D108D 0.14 TCGA-V5-AASX-01 9 138742207 138742207 G A CAMSAP1 Silent p.L303L 0.13 TCGA-V5-AASX-01 9 14756394 14756394 A C FREM1 Silent p.S1795S 0.21 TCGA-V5-AASX-01 9 43625043 43625043 T A SPATA31A6 Missense_Mutation p.K1215M 0.22 deleterious(0) possibly_damaging(0.757) TCGA-V5-AASX-01 9 73461495 73461495 A T TRPM3 Missense_Mutation p.S159T 0.14 deleterious(0) benign(0.372) TCGA-V5-AASX-01 9 77562208 77562208 G A C9orf40 3'UTR 0.16 TCGA-V5-AASX-01 9 79954671 79954671 G A VPS13A Silent p.Q2206Q 0.12 TCGA-V5-AASX-01 9 94484837 94484837 C T ROR2 3'Flank 0.13 TCGA-V5-AASX-01 9 95609810 95609810 G A ZNF484 Missense_Mutation p.A422V 0.10 deleterious(0) probably_damaging(0.998) TCGA-V5-AASX-01 X 114058121 114058121 T G HTR2C Intron 0.18 TCGA-V5-AASX-01 X 114245244 114245244 G C IL13RA2 Missense_Mutation p.I223M 0.12 deleterious(0.01) probably_damaging(0.911) TCGA-V5-AASX-01 X 12156925 12156925 G A FRMPD4 5'UTR 0.40 TCGA-V5-AASX-01 X 12734819 12734819 C T FRMPD4 Silent p.D747D 0.26 TCGA-V5-AASX-01 X 136653108 136653108 C T ZIC3 3'UTR 0.10 TCGA-V5-AASX-01 X 139866465 139866465 C T CDR1 Missense_Mutation p.E23K 0.15 tolerated(0.07) possibly_damaging(0.486) TCGA-V5-AASX-01 X 39922265 39922265 C T BCOR Missense_Mutation p.G1303S 0.24 tolerated(1) benign(0.005) TCGA-V5-AASX-01 X 54842001 54842001 C A MAGED2 Missense_Mutation p.F569L 0.21 deleterious(0.01) unknown(0) TCGA-V5-AASX-01 X 67944242 67944242 C T STARD8 Missense_Mutation p.A1097V 0.08 tolerated(0.18) benign(0.009) TCGA-V5-AASX-01 X 72433877 72433878 - T NAP1L2 Frame_Shift_Ins p.R151Kfs*10 0.15 TCGA-V5-AASX-01 X 92926799 92926799 T C NAP1L3 Missense_Mutation p.K502R 0.19 tolerated_low_confidence(1) benign(0) TCGA-VR-A8EO-01 10 101964869 101964871 TCT - CHUK In_Frame_Del p.E439del 0.32 TCGA-VR-A8EO-01 11 31822342 31822342 G A PAX6 Silent p.D154D 0.21 TCGA-VR-A8EO-01 11 432006 432006 C T ANO9 Silent p.S133S 0.14 TCGA-VR-A8EO-01 11 62473729 62473729 A T BSCL2 Intron 0.38 TCGA-VR-A8EO-01 11 68675711 68675711 G A IGHMBP2 Missense_Mutation p.D119N 0.13 deleterious(0) possibly_damaging(0.881) TCGA-VR-A8EO-01 12 112720968 112720968 G A HECTD4 Missense_Mutation p.L348F 0.45 probably_damaging(0.976) TCGA-VR-A8EO-01 12 117154487 117154487 C T C12orf49 3'UTR 0.43 TCGA-VR-A8EO-01 12 20833600 20833600 A C PDE3A 3'UTR 0.36 TCGA-VR-A8EO-01 12 21069005 21069005 T G SLCO1B3 Missense_Mutation p.F645V 0.47 tolerated(0.23) benign(0.007) TCGA-VR-A8EO-01 12 39973422 39973422 C T ABCD2 Splice_Site p.X598_splice 0.24 TCGA-VR-A8EO-01 12 4409659 4409659 G A CCND2 3'UTR 0.26 TCGA-VR-A8EO-01 12 57492339 57492339 T A STAT6 Missense_Mutation p.Y703F 0.56 tolerated(0.49) benign(0.002) TCGA-VR-A8EO-01 12 57492341 57492341 C A STAT6 Silent p.P702P 0.56 TCGA-VR-A8EO-01 12 98987841 98987845 CTCCG - SLC25A3 Frame_Shift_Del p.L29Qfs*26 0.42 TCGA-VR-A8EO-01 13 36428681 36428681 C T DCLK1 Silent p.S330S 0.83 TCGA-VR-A8EO-01 14 45376048 45376048 G T C14orf28 3'UTR 0.60 TCGA-VR-A8EO-01 14 53326257 53326257 G A FERMT2 Intron 0.43 TCGA-VR-A8EO-01 15 44093841 44093841 A G HYPK Intron 0.52 TCGA-VR-A8EO-01 15 52356854 52356854 A T MAPK6 Missense_Mutation p.N608I 0.60 deleterious_low_confidence(0) benign(0.024) TCGA-VR-A8EO-01 16 71842857 71842857 C T AP1G1 5'UTR 0.20 TCGA-VR-A8EO-01 16 84182611 84182611 G T DNAAF1 Splice_Site p.X42_splice 0.53 TCGA-VR-A8EO-01 17 1838608 1838609 - A RTN4RL1 3'UTR 0.31 TCGA-VR-A8EO-01 17 6945037 6945037 G A SLC16A11 Silent p.S459S 0.76 TCGA-VR-A8EO-01 17 72305580 72305580 G A DNAI2 Intron 0.17 TCGA-VR-A8EO-01 17 7577115 7577115 A - TP53 Frame_Shift_Del p.C275Vfs*70 0.30 TCGA-VR-A8EO-01 17 7578407 7578407 G C TP53 Missense_Mutation p.R175G 0.38 deleterious(0) probably_damaging(0.985) TCGA-VR-A8EO-01 17 79662971 79662971 C T HGS Silent p.S445S 0.45 TCGA-VR-A8EO-01 18 19231348 19231348 C T ABHD3 3'UTR 0.38 TCGA-VR-A8EO-01 19 13010666 13010666 C G GCDH 3'UTR 0.67 TCGA-VR-A8EO-01 19 14066943 14066943 C T DCAF15 Missense_Mutation p.S161L 0.64 tolerated(0.06) benign(0.116) TCGA-VR-A8EO-01 19 1456085 1456085 C G APC2 Missense_Mutation p.S217W 0.25 probably_damaging(0.993) TCGA-VR-A8EO-01 19 17396582 17396582 C T ANKLE1 Silent p.V543V 0.31 TCGA-VR-A8EO-01 19 39422990 39422990 C T MRPS12 Missense_Mutation p.R23W 0.43 tolerated(0.19) benign(0.316) TCGA-VR-A8EO-01 19 52132662 52132662 G A SIGLEC5 Missense_Mutation p.R217C 0.47 deleterious(0.03) possibly_damaging(0.641) TCGA-VR-A8EO-01 19 53611721 53611721 C T ZNF415 Missense_Mutation p.C526Y 0.24 deleterious(0.03) probably_damaging(0.981) TCGA-VR-A8EO-01 19 9771405 9771405 T C ZNF562 Missense_Mutation p.M6V 0.22 deleterious(0.04) benign(0.001) TCGA-VR-A8EO-01 1 12268239 12268239 C T TNFRSF1B 3'UTR 0.40 TCGA-VR-A8EO-01 1 197411469 197411470 TT - CRB1 Intron 0.15 TCGA-VR-A8EO-01 1 206653841 206653841 C T IKBKE Silent p.S464S 0.73 TCGA-VR-A8EO-01 1 213181560 213181560 C G ANGEL2 Missense_Mutation p.D212H 0.71 deleterious(0) probably_damaging(0.973) TCGA-VR-A8EO-01 1 87040226 87040226 G A CLCA4 Missense_Mutation p.E491K 0.37 deleterious(0) probably_damaging(0.996) TCGA-VR-A8EO-01 20 30309595 30309595 A G BCL2L1 Missense_Mutation p.F143L 0.05 tolerated(1) probably_damaging(0.939) TCGA-VR-A8EO-01 20 33451262 33451262 C T GGT7 Missense_Mutation p.E87K 0.18 deleterious(0.01) probably_damaging(0.989) TCGA-VR-A8EO-01 20 3891428 3891428 A T PANK2 Missense_Mutation p.I396F 0.48 deleterious(0.01) probably_damaging(0.996) TCGA-VR-A8EO-01 20 44184456 44184456 C T WFDC8 Missense_Mutation p.R110H 0.37 tolerated(0.19) benign(0.208) TCGA-VR-A8EO-01 20 60912736 60912736 G A LAMA5 Missense_Mutation p.R692W 0.34 probably_damaging(0.983) TCGA-VR-A8EO-01 20 62221818 62221818 G A GMEB2 Missense_Mutation p.P406L 0.43 deleterious(0) benign(0.124) TCGA-VR-A8EO-01 20 76735 76735 A G DEFB125 Missense_Mutation p.R50G 0.30 tolerated(0.11) benign(0.001) TCGA-VR-A8EO-01 22 18063897 18063897 C T SLC25A18 Nonsense_Mutation p.Q39* 0.48 TCGA-VR-A8EO-01 22 19951267 19951267 T C COMT Silent p.A156A 0.43 TCGA-VR-A8EO-01 22 38519192 38519192 C T PLA2G6 Missense_Mutation p.E501K 0.38 deleterious(0) possibly_damaging(0.713) TCGA-VR-A8EO-01 2 160027186 160027186 C T TANC1 Silent p.N407N 0.45 TCGA-VR-A8EO-01 2 169985261 169985261 G A LRP2 Missense_Mutation p.S4627L 0.24 benign(0.001) TCGA-VR-A8EO-01 2 179425882 179425882 C T TTN Missense_Mutation p.R28326Q 0.56 TCGA-VR-A8EO-01 2 47387564 47387564 A G CALM2 3'UTR 0.52 TCGA-VR-A8EO-01 2 90260126 90260126 C A IGKV1D-8 Missense_Mutation p.Q77K 0.26 tolerated(0.15) benign(0.022) TCGA-VR-A8EO-01 3 138329850 138329850 C T FAIM Silent p.L17L 0.36 TCGA-VR-A8EO-01 3 183910411 183910411 A G ABCF3 Missense_Mutation p.K531R 0.25 deleterious(0.01) probably_damaging(1) TCGA-VR-A8EO-01 4 110427668 110427668 A T SEC24B Missense_Mutation p.D558V 0.73 deleterious(0) probably_damaging(0.931) TCGA-VR-A8EO-01 4 113461239 113461239 A T C4orf21 Missense_Mutation p.D1984E 0.43 tolerated(0.74) benign(0.019) TCGA-VR-A8EO-01 4 186427792 186427792 G A PDLIM3 Missense_Mutation p.S226L 0.21 tolerated(0.25) benign(0.001) TCGA-VR-A8EO-01 4 71202757 71202757 C A CABS1 3'UTR 0.59 TCGA-VR-A8EO-01 4 71672412 71672412 C T RUFY3 3'UTR 0.05 TCGA-VR-A8EO-01 6 119500460 119500460 A G MAN1A1 3'UTR 0.50 TCGA-VR-A8EO-01 6 121526252 121526252 T C TBC1D32 Missense_Mutation p.N847D 0.43 deleterious(0.04) benign(0.025) TCGA-VR-A8EO-01 6 26017877 26017877 A T HIST1H1A Silent p.A28A 0.33 TCGA-VR-A8EO-01 6 28333434 28333434 G C ZKSCAN3 Missense_Mutation p.S330T 0.40 tolerated(1) benign(0.004) TCGA-VR-A8EO-01 6 38957896 38957896 C T DNAH8 Missense_Mutation p.P4171S 0.42 probably_damaging(0.999) TCGA-VR-A8EO-01 6 80749463 80749463 G T TTK Missense_Mutation p.M727I 0.34 deleterious(0.02) probably_damaging(0.981) TCGA-VR-A8EO-01 7 57529387 57529387 C A ZNF716 Missense_Mutation p.P407H 0.12 deleterious(0.01) possibly_damaging(0.894) TCGA-VR-A8EO-01 7 73008267 73008267 C T MLXIPL Silent p.L829L 0.54 TCGA-VR-A8EO-01 7 73609938 73609938 G A EIF4H 3'UTR 0.92 TCGA-VR-A8EO-01 8 100533161 100533161 G C VPS13B Missense_Mutation p.L1581F 0.67 tolerated(0.13) probably_damaging(0.969) TCGA-VR-A8EO-01 8 145247236 145247236 G T MROH1 Missense_Mutation p.A294S 0.20 tolerated(0.69) benign(0.013) TCGA-VR-A8EO-01 8 2040194 2040194 C T MYOM2 Missense_Mutation p.R617W 0.14 deleterious(0) probably_damaging(0.988) TCGA-VR-A8EO-01 8 41367894 41367894 G T GOLGA7 3'UTR 0.57 TCGA-VR-A8EO-01 8 92409984 92409984 G A SLC26A7 3'Flank 0.14 TCGA-VR-A8EO-01 X 105451566 105451566 G T MUM1L1 3'UTR 0.45 TCGA-VR-A8EO-01 X 140335650 140335650 C A SPANXC Nonstop_Mutation p.*98Yext*11 0.56 TCGA-VR-A8EP-01 10 47088016 47088016 G A NPY4R 3'UTR 0.06 TCGA-VR-A8EP-01 10 7683899 7683899 T G ITIH5 Missense_Mutation p.N97T 0.13 deleterious(0) probably_damaging(1) TCGA-VR-A8EP-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.41 TCGA-VR-A8EP-01 10 97916723 97916723 C G ZNF518A RNA 0.22 TCGA-VR-A8EP-01 11 1253282 1253282 G T MUC5B Missense_Mutation p.V579L 0.50 unknown(0) TCGA-VR-A8EP-01 11 134240260 134240260 G A GLB1L2 Silent p.L394L 0.36 TCGA-VR-A8EP-01 11 22399953 22399953 T C SLC17A6 3'UTR 0.15 TCGA-VR-A8EP-01 11 22399968 22399968 G C SLC17A6 3'UTR 0.13 TCGA-VR-A8EP-01 11 55540951 55540951 C A OR5D13 Missense_Mutation p.T13N 0.42 deleterious(0.02) benign(0.03) TCGA-VR-A8EP-01 11 65300209 65300209 A T SCYL1 Missense_Mutation p.Q388L 0.15 deleterious(0) benign(0.15) TCGA-VR-A8EP-01 11 68381717 68381718 - T PPP6R3 3'UTR 0.13 TCGA-VR-A8EP-01 11 89537421 89537423 TCT - TRIM49 In_Frame_Del p.K72del 0.30 TCGA-VR-A8EP-01 12 102558365 102558365 G A PARPBP Silent p.E215E 0.30 TCGA-VR-A8EP-01 12 112478314 112478314 G C NAA25 Missense_Mutation p.L837V 0.25 tolerated(0.82) benign(0.002) TCGA-VR-A8EP-01 12 123104889 123104889 C G KNTC1 Intron 0.17 TCGA-VR-A8EP-01 12 40919112 40919112 G T MUC19 Intron 0.34 TCGA-VR-A8EP-01 12 40919113 40919113 G T MUC19 Intron 0.34 TCGA-VR-A8EP-01 12 52200368 52200368 C G SCN8A Missense_Mutation p.Q1700E 0.24 deleterious(0.05) possibly_damaging(0.721) TCGA-VR-A8EP-01 12 66703557 66703557 T G HELB Silent p.L283L 0.33 TCGA-VR-A8EP-01 12 75710093 75710093 G A CAPS2 Missense_Mutation p.A216V 0.24 tolerated(0.08) benign(0.333) TCGA-VR-A8EP-01 12 78513439 78513439 C G NAV3 Missense_Mutation p.H1155D 0.20 deleterious(0.04) probably_damaging(0.999) TCGA-VR-A8EP-01 12 99053025 99053025 G A APAF1 Missense_Mutation p.R205Q 0.17 deleterious(0) probably_damaging(0.996) TCGA-VR-A8EP-01 13 19751582 19751582 C T TUBA3C Missense_Mutation p.V181M 0.21 deleterious_low_confidence(0.02) probably_damaging(0.981) TCGA-VR-A8EP-01 13 48947603 48947603 C G RB1 Nonsense_Mutation p.S397* 0.36 TCGA-VR-A8EP-01 14 105420323 105420323 A C AHNAK2 Missense_Mutation p.L489V 0.14 benign(0.051) TCGA-VR-A8EP-01 14 105518224 105518224 G - GPR132 Frame_Shift_Del p.L84Wfs*27 0.67 TCGA-VR-A8EP-01 14 28735149 28735150 - A BNIP3P1 RNA 0.35 TCGA-VR-A8EP-01 14 51101561 51101561 A T SAV1 3'UTR 0.16 TCGA-VR-A8EP-01 14 93299494 93299494 A T GOLGA5 Missense_Mutation p.S583C 0.52 deleterious(0) probably_damaging(0.995) TCGA-VR-A8EP-01 15 40510661 40510661 A T BUB1B Missense_Mutation p.D952V 0.27 deleterious(0) probably_damaging(0.966) TCGA-VR-A8EP-01 15 42137203 42137203 T C PLA2G4B Silent p.L623L 0.33 TCGA-VR-A8EP-01 15 43023524 43023524 T C CDAN1 Missense_Mutation p.Q582R 0.23 tolerated(0.05) benign(0.053) TCGA-VR-A8EP-01 15 44084311 44084311 C G SERF2 5'Flank 0.25 TCGA-VR-A8EP-01 15 48733973 48733973 G A FBN1 Silent p.F2036F 0.32 TCGA-VR-A8EP-01 15 51697090 51697090 C T GLDN 3'UTR 0.29 TCGA-VR-A8EP-01 15 54825247 54825247 G T UNC13C Missense_Mutation p.M1893I 0.23 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VR-A8EP-01 15 59359099 59359099 T G RNF111 Missense_Mutation p.H501Q 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VR-A8EP-01 15 90784897 90784897 C T GDPGP1 Missense_Mutation p.P253S 0.54 deleterious(0.01) probably_damaging(1) TCGA-VR-A8EP-01 15 99674046 99674047 - TTCTGTTATAGCCTAAG SYNM 3'UTR 0.41 TCGA-VR-A8EP-01 16 28167693 28167693 T G XPO6 Missense_Mutation p.T267P 0.51 deleterious(0.01) benign(0.37) TCGA-VR-A8EP-01 16 49856581 49856581 C T ZNF423 Missense_Mutation p.V6I 0.59 deleterious_low_confidence(0) benign(0.006) TCGA-VR-A8EP-01 16 50785664 50785664 T C CYLD Silent p.G218G 0.50 TCGA-VR-A8EP-01 16 56509434 56509434 A G OGFOD1 Missense_Mutation p.Y475C 0.04 tolerated(0.07) benign(0.021) TCGA-VR-A8EP-01 16 67690174 67690174 C G RLTPR Missense_Mutation p.I1262M 0.32 tolerated(0.24) benign(0.026) TCGA-VR-A8EP-01 16 69200160 69200160 T C CIRH1A Intron 0.42 TCGA-VR-A8EP-01 16 69200161 69200161 G T CIRH1A Intron 0.50 TCGA-VR-A8EP-01 17 34171736 34171736 G T TAF15 Missense_Mutation p.G478V 0.34 tolerated_low_confidence(0.07) unknown(0) TCGA-VR-A8EP-01 17 7578526 7578526 C T TP53 Missense_Mutation p.C135Y 0.45 deleterious(0) probably_damaging(1) TCGA-VR-A8EP-01 17 79220340 79220340 A G SLC38A10 Silent p.P792P 0.75 TCGA-VR-A8EP-01 17 9821406 9821406 C A GAS7 Missense_Mutation p.R410L 0.39 deleterious(0.01) possibly_damaging(0.785) TCGA-VR-A8EP-01 18 22804854 22804854 G T ZNF521 Missense_Mutation p.H1010N 0.25 deleterious(0) probably_damaging(0.991) TCGA-VR-A8EP-01 18 30795599 30795599 A - CCDC178 Frame_Shift_Del p.Y665Mfs*4 0.31 TCGA-VR-A8EP-01 18 31431159 31431159 C G NOL4 3'UTR 0.07 TCGA-VR-A8EP-01 18 56652849 56652849 C T ZNF532 3'UTR 0.14 TCGA-VR-A8EP-01 18 59768391 59768391 T A PIGN Missense_Mutation p.Y665F 0.37 tolerated(0.2) benign(0.082) TCGA-VR-A8EP-01 18 746023 746023 C G YES1 Missense_Mutation p.D167H 0.47 deleterious(0) probably_damaging(0.992) TCGA-VR-A8EP-01 19 11979010 11979010 C T ZNF439 Missense_Mutation p.H376Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EP-01 19 12494426 12494426 T C CTD-3105H18.14 Missense_Mutation p.N27D 0.25 tolerated_low_confidence(0.05) benign(0.225) TCGA-VR-A8EP-01 19 13084458 13084458 C A DAND5 3'UTR 0.26 TCGA-VR-A8EP-01 19 17974110 17974110 C G RPL18A 3'UTR 0.35 TCGA-VR-A8EP-01 19 1924143 1924143 C T SCAMP4 Nonsense_Mutation p.Q184* 0.07 TCGA-VR-A8EP-01 19 34264124 34264124 G C CHST8 3'UTR 0.30 TCGA-VR-A8EP-01 19 37130506 37130507 CT - ZNF461 Frame_Shift_Del p.E247Vfs*2 0.27 TCGA-VR-A8EP-01 19 38028524 38028524 G A ZNF793 Missense_Mutation p.E322K 0.34 deleterious(0.04) possibly_damaging(0.824) TCGA-VR-A8EP-01 19 38103432 38103432 G C ZNF540 Missense_Mutation p.E417D 0.48 deleterious(0.01) benign(0.103) TCGA-VR-A8EP-01 19 44516597 44516597 T C ZNF230 3'UTR 0.17 TCGA-VR-A8EP-01 19 45684003 45684003 G C BLOC1S3 3'UTR 0.18 TCGA-VR-A8EP-01 19 48922912 48922912 G A GRIN2D Silent p.S644S 0.16 TCGA-VR-A8EP-01 19 49230042 49230042 C T RASIP1 Silent p.K709K 0.31 TCGA-VR-A8EP-01 19 55853280 55853280 G C SUV420H2 5'UTR 0.16 TCGA-VR-A8EP-01 1 103496701 103496701 C A COL11A1 Missense_Mutation p.A251S 0.38 benign(0.341) TCGA-VR-A8EP-01 1 104122112 104122112 C G AMY2B Missense_Mutation p.S509C 0.02 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EP-01 1 109643003 109643003 G C TMEM167B 3'Flank 0.27 TCGA-VR-A8EP-01 1 159899523 159899523 C A IGSF9 Missense_Mutation p.C744F 0.28 deleterious(0) benign(0.361) TCGA-VR-A8EP-01 1 160765947 160765947 C G LY9 5'Flank 0.18 TCGA-VR-A8EP-01 1 168066315 168066315 A G GPR161 Missense_Mutation p.M197T 0.13 tolerated(0.92) benign(0.006) TCGA-VR-A8EP-01 1 172362646 172362646 C A DNM3 Intron 0.42 TCGA-VR-A8EP-01 1 198608248 198608248 T C PTPRC 5'UTR 0.32 TCGA-VR-A8EP-01 1 203765608 203765608 C T ZC3H11A 5'Flank 0.37 TCGA-VR-A8EP-01 1 20411357 20411357 G A PLA2G5 Missense_Mutation p.A12T 0.28 tolerated(0.1) benign(0.007) TCGA-VR-A8EP-01 1 235860435 235860435 G C LYST Missense_Mutation p.I3504M 0.37 deleterious(0) probably_damaging(0.99) TCGA-VR-A8EP-01 1 27333125 27333125 G A FAM46B Silent p.S196S 0.41 TCGA-VR-A8EP-01 1 34329981 34329981 G C HMGB4 Silent p.L63L 0.36 TCGA-VR-A8EP-01 1 45962253 45962253 C T CCDC163P Missense_Mutation p.R102Q 0.16 tolerated_low_confidence(0.3) benign(0.417) TCGA-VR-A8EP-01 1 47098981 47098981 C T ATPAF1 3'UTR 0.20 TCGA-VR-A8EP-01 1 56962230 56962230 A G PPAP2B Missense_Mutation p.M310T 0.31 deleterious_low_confidence(0) benign(0.272) TCGA-VR-A8EP-01 1 65113504 65113504 G C CACHD1 Missense_Mutation p.E342Q 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-VR-A8EP-01 20 13029863 13029863 C T SPTLC3 Intron 0.13 TCGA-VR-A8EP-01 20 3028466 3028466 C T MRPS26 Missense_Mutation p.A190V 0.20 deleterious(0.02) benign(0.247) TCGA-VR-A8EP-01 20 47710714 47710714 G C CSE1L Missense_Mutation p.E829Q 0.39 deleterious(0.03) possibly_damaging(0.864) TCGA-VR-A8EP-01 21 11038730 11038730 G A BAGE2 Intron 0.10 TCGA-VR-A8EP-01 21 40759698 40759698 G C WRB Intron 0.24 TCGA-VR-A8EP-01 21 43305512 43305512 T A C2CD2 3'UTR 0.27 TCGA-VR-A8EP-01 22 19974605 19974605 T C ARVCF Intron 0.32 TCGA-VR-A8EP-01 22 21470420 21470420 C G KB-1592A4.15 RNA 0.03 TCGA-VR-A8EP-01 22 25566894 25566894 G C KIAA1671 Missense_Mutation p.Q1546H 0.18 tolerated(0.11) benign(0.012) TCGA-VR-A8EP-01 22 29092950 29092950 T A CHEK2 Missense_Mutation p.H388L 0.09 deleterious(0) probably_damaging(1) TCGA-VR-A8EP-01 22 32815372 32815372 C G BPIFC Missense_Mutation p.E413Q 0.30 tolerated(0.1) benign(0.21) TCGA-VR-A8EP-01 2 128341785 128341785 C A MYO7B Missense_Mutation p.R478S 0.24 tolerated(0.71) benign(0.206) TCGA-VR-A8EP-01 2 141459771 141459771 C T LRP1B Missense_Mutation p.G2081R 0.05 probably_damaging(0.953) TCGA-VR-A8EP-01 2 176989169 176989169 T C HOXD9 3'UTR 0.12 TCGA-VR-A8EP-01 2 1893241 1893241 G A MYT1L Silent p.D762D 0.23 TCGA-VR-A8EP-01 2 234405457 234405457 G A USP40 Silent p.L924L 0.29 TCGA-VR-A8EP-01 2 26717916 26717916 C T OTOF Missense_Mutation p.R264Q 0.08 tolerated(0.17) probably_damaging(0.999) TCGA-VR-A8EP-01 2 63176060 63176060 C T EHBP1 Silent p.I728I 0.32 TCGA-VR-A8EP-01 2 87001009 87001009 A T RMND5A 3'UTR 0.12 TCGA-VR-A8EP-01 3 124946044 124946044 T C ZNF148 3'UTR 0.31 TCGA-VR-A8EP-01 3 132441186 132441186 G C NPHP3 Missense_Mutation p.S5W 0.43 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EP-01 3 138340279 138340279 T C FAIM Silent p.D37D 0.33 TCGA-VR-A8EP-01 3 153935682 153935682 G A ARHGEF26 Missense_Mutation p.A624T 0.35 deleterious(0) possibly_damaging(0.532) TCGA-VR-A8EP-01 3 193380719 193380719 G C OPA1 Missense_Mutation p.E859Q 0.33 tolerated(0.78) benign(0.011) TCGA-VR-A8EP-01 3 197665569 197665569 A - IQCG Frame_Shift_Del p.L122* 0.20 TCGA-VR-A8EP-01 3 69230096 69230096 C G FRMD4B Silent p.L935L 0.42 TCGA-VR-A8EP-01 3 97617998 97617999 - TTT CRYBG3 In_Frame_Ins p.Q673delinsHL 0.41 TCGA-VR-A8EP-01 4 103538205 103538205 T A NFKB1 3'UTR 0.38 TCGA-VR-A8EP-01 4 166981293 166981293 T C TLL1 Missense_Mutation p.Y654H 0.42 tolerated(0.28) benign(0.085) TCGA-VR-A8EP-01 4 170669922 170669922 T A C4orf27 Missense_Mutation p.N157I 0.39 tolerated(0.45) benign(0.005) TCGA-VR-A8EP-01 4 186084049 186084049 C A KIAA1430 Missense_Mutation p.G501V 0.54 deleterious(0.02) probably_damaging(0.911) TCGA-VR-A8EP-01 5 102444392 102444392 T C GIN1 Missense_Mutation p.N7S 0.38 tolerated_low_confidence(0.15) benign(0.061) TCGA-VR-A8EP-01 5 10448476 10448476 T C ROPN1L Missense_Mutation p.L79P 0.23 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EP-01 5 141693968 141693968 A G SPRY4 Missense_Mutation p.S259P 0.58 tolerated(0.13) probably_damaging(0.917) TCGA-VR-A8EP-01 5 173043252 173043252 C T BOD1 Missense_Mutation p.G63D 0.57 deleterious(0) probably_damaging(1) TCGA-VR-A8EP-01 5 42719156 42719156 T C GHR Missense_Mutation p.M516T 0.19 tolerated(0.59) benign(0.004) TCGA-VR-A8EP-01 5 55204090 55204090 C A IL31RA Intron 0.45 TCGA-VR-A8EP-01 5 55204634 55204634 C T IL31RA Intron 0.40 TCGA-VR-A8EP-01 5 67594192 67594192 A G PIK3R1 3'UTR 0.07 TCGA-VR-A8EP-01 6 105530521 105530522 TG - LIN28B 3'UTR 0.13 TCGA-VR-A8EP-01 6 125146611 125146611 T C NKAIN2 3'UTR 0.09 TCGA-VR-A8EP-01 6 130496985 130496985 C G SAMD3 Splice_Site p.X274_splice 0.39 TCGA-VR-A8EP-01 6 130763018 130763018 G T TMEM200A Missense_Mutation p.R484M 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-VR-A8EP-01 6 158932126 158932126 C G TULP4 3'UTR 0.36 TCGA-VR-A8EP-01 6 35588005 35588005 T A FKBP5 Missense_Mutation p.K99N 0.35 tolerated(0.13) possibly_damaging(0.503) TCGA-VR-A8EP-01 6 37180243 37180243 A G TMEM217 3'UTR 0.23 TCGA-VR-A8EP-01 6 38891915 38891915 T C DNAH8 Missense_Mutation p.S3430P 0.07 benign(0.302) TCGA-VR-A8EP-01 6 46108786 46108786 C A ENPP4 Intron 0.43 TCGA-VR-A8EP-01 6 50803934 50803934 G C TFAP2B Missense_Mutation p.Q254H 0.48 deleterious(0.02) benign(0.142) TCGA-VR-A8EP-01 6 56481466 56481466 T A DST Intron 0.18 TCGA-VR-A8EP-01 6 76558106 76558106 T G MYO6 Missense_Mutation p.D312E 0.14 deleterious(0) unknown(0) TCGA-VR-A8EP-01 6 88226573 88226573 A C RARS2 Missense_Mutation p.S513A 0.22 tolerated(0.66) benign(0.003) TCGA-VR-A8EP-01 7 100843774 100843774 G C MOGAT3 Silent p.V44V 0.67 TCGA-VR-A8EP-01 7 102939017 102939017 A T PMPCB Silent p.S34S 0.32 TCGA-VR-A8EP-01 7 103008599 103008599 T G PSMC2 3'UTR 0.26 TCGA-VR-A8EP-01 7 154679398 154679398 C T DPP6 Missense_Mutation p.S753F 0.34 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EP-01 7 30197516 30197516 A C MTURN 3'UTR 0.36 TCGA-VR-A8EP-01 7 43918191 43918191 C T URGCP Missense_Mutation p.D291N 0.25 tolerated(0.19) possibly_damaging(0.801) TCGA-VR-A8EP-01 7 47849073 47849073 C G PKD1L1 Missense_Mutation p.E2562Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EP-01 7 54617761 54617761 G A VSTM2A Missense_Mutation p.A178T 0.31 tolerated(0.18) benign(0.098) TCGA-VR-A8EP-01 7 77325780 77325780 G T RSBN1L 5'UTR 0.19 TCGA-VR-A8EP-01 7 8260925 8260925 G C ICA1 Silent p.L120L 0.44 TCGA-VR-A8EP-01 7 94953830 94953830 G A PON1 5'UTR 0.29 TCGA-VR-A8EP-01 8 10584082 10584082 G A SOX7 Silent p.N163N 0.32 TCGA-VR-A8EP-01 8 108296965 108296965 G A ANGPT1 Nonsense_Mutation p.R384* 0.26 TCGA-VR-A8EP-01 8 113316973 113316973 C G CSMD3 Missense_Mutation p.R2748T 0.04 tolerated(0.43) possibly_damaging(0.777) TCGA-VR-A8EP-01 8 25154103 25154103 C G DOCK5 Missense_Mutation p.A182G 0.11 deleterious(0.01) benign(0.103) TCGA-VR-A8EP-01 8 39463837 39463837 C T ADAM18 Silent p.I48I 0.25 TCGA-VR-A8EP-01 8 42692592 42692592 T G THAP1 3'UTR 0.08 TCGA-VR-A8EP-01 8 90990460 90990460 G T NBN Missense_Mutation p.P191Q 0.24 deleterious(0) probably_damaging(0.99) TCGA-VR-A8EP-01 8 99019414 99019414 C T MATN2 Missense_Mutation p.S470L 0.20 tolerated(0.63) benign(0.049) TCGA-VR-A8EP-01 9 136321339 136321339 T C ADAMTS13 Splice_Site p.X1239_splice 0.09 TCGA-VR-A8EP-01 9 33112930 33112930 T C B4GALT1 3'UTR 0.37 TCGA-VR-A8EP-01 X 125685869 125685869 T C DCAF12L1 Silent p.V241V 0.57 TCGA-VR-A8EP-01 X 21670529 21670529 G C CNKSR2 Missense_Mutation p.D999H 0.57 deleterious(0) possibly_damaging(0.718) TCGA-VR-A8EP-01 X 49098512 49098512 C G CCDC22 Missense_Mutation p.Q87E 0.55 deleterious(0.01) possibly_damaging(0.641) TCGA-VR-A8EP-01 X 49643121 49643121 A G USP27X 5'Flank 0.62 TCGA-VR-A8EP-01 X 53114916 53114916 C G TSPYL2 Missense_Mutation p.H448D 0.61 deleterious_low_confidence(0.01) benign(0.4) TCGA-VR-A8EQ-01 10 103990022 103990022 G A PITX3 3'UTR 0.36 TCGA-VR-A8EQ-01 10 10988556 10988556 T G LINC00710 RNA 0.06 TCGA-VR-A8EQ-01 10 17451362 17451362 T G ST8SIA6 Intron 0.15 TCGA-VR-A8EQ-01 10 38121298 38121298 C T ZNF248 Missense_Mutation p.V329M 0.16 tolerated(0.1) possibly_damaging(0.542) TCGA-VR-A8EQ-01 10 51769578 51769578 C T AGAP6 Missense_Mutation p.R565W 0.10 tolerated(0.24) benign(0.056) TCGA-VR-A8EQ-01 11 103191922 103191923 - T DYNC2H1 Frame_Shift_Ins p.P3973Sfs*20 0.21 TCGA-VR-A8EQ-01 11 120929152 120929152 G A TBCEL Missense_Mutation p.E271K 0.28 tolerated(0.56) benign(0.004) TCGA-VR-A8EQ-01 11 128840140 128840140 C T ARHGAP32 Silent p.E1642E 0.17 TCGA-VR-A8EQ-01 11 30033455 30033455 C G KCNA4 Missense_Mutation p.K257N 0.27 tolerated(0.05) probably_damaging(0.909) TCGA-VR-A8EQ-01 11 51515472 51515472 T A OR4C46 Missense_Mutation p.L64H 0.31 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-VR-A8EQ-01 11 55340184 55340184 A C OR4C16 Missense_Mutation p.N194T 0.22 deleterious(0.01) probably_damaging(0.954) TCGA-VR-A8EQ-01 11 55889885 55889885 T G OR8H3 Missense_Mutation p.F13V 0.22 deleterious(0) probably_damaging(1) TCGA-VR-A8EQ-01 11 55944875 55944875 A G OR5J2 Missense_Mutation p.Q261R 0.28 tolerated(1) benign(0.029) TCGA-VR-A8EQ-01 11 56020501 56020501 A C OR5T3 Missense_Mutation p.T276P 0.22 deleterious(0) probably_damaging(0.981) TCGA-VR-A8EQ-01 11 59631536 59631536 G A TCN1 Missense_Mutation p.R35C 0.08 tolerated(0.18) benign(0.01) TCGA-VR-A8EQ-01 11 63987724 63987724 G A FERMT3 Missense_Mutation p.G417S 0.20 tolerated(0.22) benign(0.024) TCGA-VR-A8EQ-01 11 67165845 67165845 G A PPP1CA 3'UTR 0.19 TCGA-VR-A8EQ-01 11 69625251 69625251 C T FGF3 Missense_Mutation p.R181H 0.24 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EQ-01 11 7059855 7059855 T G NLRP14 Missense_Mutation p.F13C 0.29 tolerated(0.05) probably_damaging(0.998) TCGA-VR-A8EQ-01 11 89774338 89774338 A C TRIM49C Missense_Mutation p.S327R 0.12 tolerated(0.19) benign(0.01) TCGA-VR-A8EQ-01 12 111731320 111731320 G A CUX2 Silent p.G169G 0.24 TCGA-VR-A8EQ-01 12 111748306 111748306 C A CUX2 Silent p.R574R 0.18 TCGA-VR-A8EQ-01 12 12022497 12022497 C T ETV6 Silent p.L201L 0.22 TCGA-VR-A8EQ-01 12 121442061 121442061 C T C12orf43 Silent p.G228G 0.14 TCGA-VR-A8EQ-01 12 124081320 124081320 C T TMED2 3'UTR 0.19 TCGA-VR-A8EQ-01 12 125834009 125834009 C T TMEM132B Nonsense_Mutation p.R22* 0.33 TCGA-VR-A8EQ-01 12 40918475 40918475 A C MUC19 Intron 0.25 TCGA-VR-A8EQ-01 12 40919205 40919205 A G MUC19 Intron 0.21 TCGA-VR-A8EQ-01 12 40925451 40925451 T G MUC19 Intron 0.27 TCGA-VR-A8EQ-01 12 41365260 41365260 A C CNTN1 Intron 0.24 TCGA-VR-A8EQ-01 12 419113 419113 G A KDM5A Silent p.T1078T 0.25 TCGA-VR-A8EQ-01 12 4923630 4923630 T G KCNA6 3'UTR 0.25 TCGA-VR-A8EQ-01 12 52865895 52865895 G A KRT6C Missense_Mutation p.S237L 0.33 tolerated(0.05) probably_damaging(0.915) TCGA-VR-A8EQ-01 12 53901175 53901175 C T NPFF Silent p.Q28Q 0.19 TCGA-VR-A8EQ-01 12 66357708 66357708 A G HMGA2 3'UTR 0.16 TCGA-VR-A8EQ-01 12 81657028 81657028 T C PPFIA2 Missense_Mutation p.R1233G 0.10 deleterious_low_confidence(0) benign(0.268) TCGA-VR-A8EQ-01 12 8376111 8376111 G A FAM90A1 Silent p.S122S 0.07 TCGA-VR-A8EQ-01 12 8925956 8925956 A G RIMKLB Missense_Mutation p.K246R 0.21 deleterious(0.04) benign(0.118) TCGA-VR-A8EQ-01 12 97038008 97038008 T G C12orf55 Missense_Mutation p.L1457V 0.32 deleterious(0.02) possibly_damaging(0.651) TCGA-VR-A8EQ-01 13 28498435 28498435 G A PDX1 Missense_Mutation p.R150H 0.20 deleterious(0) probably_damaging(1) TCGA-VR-A8EQ-01 13 36050159 36050159 G A MAB21L1 Silent p.S39S 0.37 TCGA-VR-A8EQ-01 13 36877946 36877946 T G SPG20 3'UTR 0.26 TCGA-VR-A8EQ-01 13 61986010 61986010 A G PCDH20 Missense_Mutation p.L741P 0.29 deleterious(0) possibly_damaging(0.642) TCGA-VR-A8EQ-01 13 86367622 86367622 T G SLITRK6 3'UTR 0.15 TCGA-VR-A8EQ-01 14 20344520 20344520 T G OR4K2 Missense_Mutation p.S32A 0.26 deleterious(0.03) benign(0.314) TCGA-VR-A8EQ-01 14 23790648 23790648 C T PABPN1 5'UTR 0.19 TCGA-VR-A8EQ-01 14 44974802 44974802 T C FSCB Silent p.K463K 0.29 TCGA-VR-A8EQ-01 14 60483410 60483410 G T LRRC9 Missense_Mutation p.L1073F 0.28 deleterious(0.01) possibly_damaging(0.793) TCGA-VR-A8EQ-01 14 68086728 68086728 C T ARG2 Nonsense_Mutation p.Q12* 0.40 TCGA-VR-A8EQ-01 14 71434934 71434934 G A PCNX Missense_Mutation p.R163H 0.09 deleterious(0.04) benign(0.433) TCGA-VR-A8EQ-01 14 78023429 78023429 C T SPTLC2 Missense_Mutation p.R304Q 0.16 deleterious(0.04) benign(0.067) TCGA-VR-A8EQ-01 14 81943131 81943131 G C SEL1L 3'UTR 0.41 TCGA-VR-A8EQ-01 15 40558217 40558217 G C PAK6 Missense_Mutation p.D127H 0.13 deleterious(0) probably_damaging(0.942) TCGA-VR-A8EQ-01 15 54792315 54792315 A C UNC13C Missense_Mutation p.N1700T 0.45 deleterious_low_confidence(0) benign(0.342) TCGA-VR-A8EQ-01 15 67473779 67473779 C T SMAD3 Missense_Mutation p.R287W 0.64 deleterious(0) probably_damaging(1) TCGA-VR-A8EQ-01 15 79291088 79291088 G A RASGRF1 Silent p.L958L 0.47 TCGA-VR-A8EQ-01 15 86838515 86838515 C A AGBL1 Silent p.V704V 0.39 TCGA-VR-A8EQ-01 15 91456129 91456129 C T MAN2A2 Missense_Mutation p.P831L 0.43 deleterious(0) benign(0.248) TCGA-VR-A8EQ-01 15 92459401 92459401 C T SLCO3A1 Missense_Mutation p.A120V 0.55 deleterious(0.01) probably_damaging(0.979) TCGA-VR-A8EQ-01 16 3645642 3645642 C T SLX4 Silent p.S659S 0.12 TCGA-VR-A8EQ-01 16 55731829 55731829 C T SLC6A2 Silent p.V427V 0.11 TCGA-VR-A8EQ-01 16 70778407 70778407 G C VAC14 Missense_Mutation p.L483V 0.14 tolerated(0.52) benign(0.001) TCGA-VR-A8EQ-01 16 71660355 71660355 C T MARVELD3 Missense_Mutation p.R75W 0.26 deleterious(0.04) unknown(0) TCGA-VR-A8EQ-01 16 76569521 76569521 A T CNTNAP4 Missense_Mutation p.E872D 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-VR-A8EQ-01 16 77850905 77850905 T C VAT1L Silent p.S107S 0.18 TCGA-VR-A8EQ-01 16 87678000 87678000 C T JPH3 Silent p.N173N 0.22 TCGA-VR-A8EQ-01 17 10432983 10432983 G C MYH2 Silent p.L1005L 0.16 TCGA-VR-A8EQ-01 17 2202239 2202239 C T SMG6 Missense_Mutation p.R603H 0.16 tolerated(0.06) benign(0.008) TCGA-VR-A8EQ-01 17 25637196 25637196 G A WSB1 Missense_Mutation p.D332N 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-VR-A8EQ-01 17 3119716 3119716 A C OR1A1 Missense_Mutation p.K268Q 0.29 tolerated(0.2) possibly_damaging(0.861) TCGA-VR-A8EQ-01 17 34308432 34308432 A G CCL16 Missense_Mutation p.S9P 0.14 tolerated(0.25) benign(0.198) TCGA-VR-A8EQ-01 17 35545292 35545292 G A ACACA Silent p.L1567L 0.11 TCGA-VR-A8EQ-01 17 43192556 43192556 C T PLCD3 Missense_Mutation p.R539H 0.15 tolerated(1) benign(0.033) TCGA-VR-A8EQ-01 17 48148781 48148781 G A ITGA3 Silent p.Q286Q 0.35 TCGA-VR-A8EQ-01 17 57644075 57644075 G A DHX40 Missense_Mutation p.R67K 0.27 tolerated(0.36) benign(0.011) TCGA-VR-A8EQ-01 17 63524917 63524917 C T AXIN2 3'UTR 0.27 TCGA-VR-A8EQ-01 17 650986 650986 C T GEMIN4 Silent p.S99S 0.33 TCGA-VR-A8EQ-01 17 7366573 7366573 G A ZBTB4 Silent p.G576G 0.08 TCGA-VR-A8EQ-01 17 7577558 7577558 G - TP53 Frame_Shift_Del p.C242Afs*5 0.36 TCGA-VR-A8EQ-01 17 78399375 78399375 G A ENDOV Silent p.L223L 0.34 TCGA-VR-A8EQ-01 18 22669454 22669454 T G ZNF521 Missense_Mutation p.K1294T 0.12 tolerated(0.13) benign(0.002) TCGA-VR-A8EQ-01 18 22805957 22805957 T G ZNF521 Missense_Mutation p.K642T 0.37 tolerated(0.17) probably_damaging(0.93) TCGA-VR-A8EQ-01 18 25543380 25543380 G - CDH2 Frame_Shift_Del p.Q819Sfs*38 0.10 TCGA-VR-A8EQ-01 18 29203672 29203672 A T B4GALT6 3'UTR 0.21 TCGA-VR-A8EQ-01 18 29203678 29203678 G C B4GALT6 3'UTR 0.23 TCGA-VR-A8EQ-01 18 29264294 29264294 G A B4GALT6 Silent p.I32I 0.06 TCGA-VR-A8EQ-01 18 30846889 30846889 G T CCDC178 Missense_Mutation p.T467N 0.26 deleterious(0.01) benign(0.152) TCGA-VR-A8EQ-01 18 48591903 48591903 C T SMAD4 Missense_Mutation p.P356S 0.23 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EQ-01 18 50731590 50731590 A C DCC Missense_Mutation p.Q526H 0.18 tolerated(0.1) benign(0.021) TCGA-VR-A8EQ-01 18 7567697 7567697 T C PTPRM 5'UTR 0.22 TCGA-VR-A8EQ-01 19 16272270 16272270 G T CIB3 3'UTR 0.34 TCGA-VR-A8EQ-01 19 17877516 17877516 C T FCHO1 Missense_Mutation p.S78L 0.24 tolerated(0.07) benign(0.111) TCGA-VR-A8EQ-01 19 22575277 22575277 T C ZNF98 Missense_Mutation p.T254A 0.37 tolerated(0.09) probably_damaging(0.96) TCGA-VR-A8EQ-01 19 30018291 30018291 G A VSTM2B Missense_Mutation p.A86T 0.16 tolerated(0.98) benign(0.353) TCGA-VR-A8EQ-01 19 36297626 36297626 G A PRODH2 Missense_Mutation p.P338L 0.09 deleterious(0.03) possibly_damaging(0.71) TCGA-VR-A8EQ-01 19 37309758 37309758 G A ZNF790 Silent p.H496H 0.11 TCGA-VR-A8EQ-01 19 41942337 41942337 C T ATP5SL Missense_Mutation p.A92T 0.47 tolerated(0.16) benign(0.177) TCGA-VR-A8EQ-01 19 51961658 51961658 G A SIGLEC8 5'UTR 0.62 TCGA-VR-A8EQ-01 19 53995982 53995982 A T ZNF813 3'UTR 0.40 TCGA-VR-A8EQ-01 19 55350994 55350994 A C KIR2DS4 Missense_Mutation p.N161T 0.40 deleterious_low_confidence(0.01) benign(0.263) TCGA-VR-A8EQ-01 19 57325595 57325595 T G PEG3 Missense_Mutation p.E1405D 0.25 tolerated(0.09) possibly_damaging(0.872) TCGA-VR-A8EQ-01 1 100382219 100382219 G A AGL Silent p.P1471P 0.28 TCGA-VR-A8EQ-01 1 109339310 109339310 C T STXBP3 Missense_Mutation p.R440C 0.25 tolerated(0.2) benign(0.007) TCGA-VR-A8EQ-01 1 142803527 142803527 A C RP11-423O2.5 RNA 0.06 TCGA-VR-A8EQ-01 1 152659513 152659513 A C LCE2B Missense_Mutation p.N65T 0.25 tolerated_low_confidence(1) unknown(0) TCGA-VR-A8EQ-01 1 165638177 165638177 C T ALDH9A1 Missense_Mutation p.R398K 0.16 tolerated(0.39) benign(0.005) TCGA-VR-A8EQ-01 1 170993634 170993634 A C MROH9 Missense_Mutation p.E669D 0.21 tolerated(0.49) benign(0.009) TCGA-VR-A8EQ-01 1 175323593 175323593 T G TNR Missense_Mutation p.T1106P 0.23 deleterious(0) probably_damaging(0.974) TCGA-VR-A8EQ-01 1 198492380 198492380 C T ATP6V1G3 3'UTR 0.53 TCGA-VR-A8EQ-01 1 201618242 201618242 C A NAV1 Missense_Mutation p.A149D 0.18 deleterious(0.02) benign(0.014) TCGA-VR-A8EQ-01 1 215409456 215409456 A T KCNK2 3'UTR 0.19 TCGA-VR-A8EQ-01 1 228548224 228548224 T G OBSCN Intron 0.35 TCGA-VR-A8EQ-01 1 228582443 228582443 G A TRIM11 Missense_Mutation p.P457L 0.13 tolerated(0.54) benign(0.002) TCGA-VR-A8EQ-01 1 237550622 237550622 T C RYR2 Silent p.A206A 0.33 TCGA-VR-A8EQ-01 1 240255871 240255871 C T FMN2 Silent p.V154V 0.21 TCGA-VR-A8EQ-01 1 33276597 33276597 C G YARS Missense_Mutation p.W40S 0.25 deleterious(0) probably_damaging(1) TCGA-VR-A8EQ-01 1 3382716 3382716 C T ARHGEF16 Missense_Mutation p.T198M 0.39 deleterious(0.04) probably_damaging(0.932) TCGA-VR-A8EQ-01 1 35370007 35370007 C T DLGAP3 Silent p.S326S 0.14 TCGA-VR-A8EQ-01 1 35442213 35442213 G A ZMYM6NB 3'Flank 0.19 TCGA-VR-A8EQ-01 1 38219911 38219911 C T EPHA10 Missense_Mutation p.D328N 0.08 deleterious(0.02) benign(0.308) TCGA-VR-A8EQ-01 1 42046256 42046256 T G HIVEP3 Silent p.R1405R 0.33 TCGA-VR-A8EQ-01 1 70616844 70616844 A G LRRC40 Missense_Mutation p.V495A 0.11 tolerated(0.64) benign(0) TCGA-VR-A8EQ-01 1 75086495 75086495 C T C1orf173 Missense_Mutation p.R308Q 0.32 deleterious(0.04) benign(0.301) TCGA-VR-A8EQ-01 1 84356015 84356015 G A TTLL7 Silent p.F786F 0.13 TCGA-VR-A8EQ-01 20 17641080 17641080 T A RRBP1 Missense_Mutation p.I25F 0.47 deleterious(0) probably_damaging(0.943) TCGA-VR-A8EQ-01 20 21492085 21492085 T A NKX2-2 3'UTR 0.42 TCGA-VR-A8EQ-01 20 40706953 40706953 T G PTPRT 3'UTR 0.31 TCGA-VR-A8EQ-01 21 28290443 28290443 A G ADAMTS5 3'UTR 0.33 TCGA-VR-A8EQ-01 22 29879382 29879382 C T NEFH Missense_Mutation p.S301L 0.28 deleterious(0) unknown(0) TCGA-VR-A8EQ-01 22 38642064 38642064 G A TMEM184B Missense_Mutation p.R79C 0.12 deleterious(0.01) probably_damaging(0.982) TCGA-VR-A8EQ-01 22 49147498 49147498 G T FAM19A5 3'Flank 0.20 TCGA-VR-A8EQ-01 2 106471533 106471533 T G NCK2 Missense_Mutation p.V5G 0.22 deleterious(0.02) benign(0.185) TCGA-VR-A8EQ-01 2 108487761 108487761 C T RGPD4 Nonsense_Mutation p.R1101* 0.37 TCGA-VR-A8EQ-01 2 11720943 11720943 C T GREB1 Nonsense_Mutation p.R296* 0.19 TCGA-VR-A8EQ-01 2 125232373 125232373 T G CNTNAP5 Missense_Mutation p.F326V 0.10 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EQ-01 2 141202169 141202169 C A LRP1B Missense_Mutation p.E3379D 0.14 possibly_damaging(0.523) TCGA-VR-A8EQ-01 2 141660604 141660604 A G LRP1B Silent p.Y1217Y 0.24 TCGA-VR-A8EQ-01 2 1500486 1500486 C T TPO Nonsense_Mutation p.Q779* 0.14 TCGA-VR-A8EQ-01 2 170402728 170402728 C T FASTKD1 Silent p.K567K 0.17 TCGA-VR-A8EQ-01 2 179500965 179500965 A C TTN Missense_Mutation p.L13778R 0.44 TCGA-VR-A8EQ-01 2 179602842 179602842 T C TTN Missense_Mutation p.S4780G 0.26 TCGA-VR-A8EQ-01 2 186672781 186672781 G A FSIP2 Missense_Mutation p.E6339K 0.15 probably_damaging(0.917) TCGA-VR-A8EQ-01 2 197629382 197629382 G A GTF3C3 Nonsense_Mutation p.R856* 0.14 TCGA-VR-A8EQ-01 2 198948610 198948610 A C PLCL1 Missense_Mutation p.K123N 0.16 deleterious(0) probably_damaging(1) TCGA-VR-A8EQ-01 2 210570439 210570439 C T MAP2 Missense_Mutation p.R1574W 0.21 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EQ-01 2 239162260 239162260 C T PER2 Missense_Mutation p.V802I 0.29 tolerated(0.68) benign(0.018) TCGA-VR-A8EQ-01 2 241818185 241818185 G A AGXT Missense_Mutation p.V376M 0.31 deleterious(0.01) possibly_damaging(0.85) TCGA-VR-A8EQ-01 2 31484569 31484569 A G EHD3 Missense_Mutation p.K357R 0.12 tolerated(0.34) benign(0.001) TCGA-VR-A8EQ-01 2 71061030 71061030 T G CD207 Silent p.A104A 0.13 TCGA-VR-A8EQ-01 2 77745909 77745909 T G LRRTM4 Missense_Mutation p.E362D 0.47 tolerated(0.78) benign(0.093) TCGA-VR-A8EQ-01 2 87240111 87240111 G A RGPD1 3'UTR 0.15 TCGA-VR-A8EQ-01 3 101451488 101451488 C T CEP97 Nonsense_Mutation p.Q240* 0.14 TCGA-VR-A8EQ-01 3 140277646 140277646 A C CLSTN2 Missense_Mutation p.K663T 0.47 tolerated(0.06) benign(0.011) TCGA-VR-A8EQ-01 3 141932411 141932411 G A GK5 Missense_Mutation p.L92F 0.42 tolerated(0.06) probably_damaging(0.976) TCGA-VR-A8EQ-01 3 153220377 153220377 T G C3orf79 3'UTR 0.30 TCGA-VR-A8EQ-01 3 165548603 165548604 - T BCHE Frame_Shift_Ins p.P74Afs*9 0.16 TCGA-VR-A8EQ-01 3 172115464 172115464 T A FNDC3B 3'UTR 0.13 TCGA-VR-A8EQ-01 3 173997426 173997426 T G NLGN1 Missense_Mutation p.N545K 0.25 deleterious(0) probably_damaging(1) TCGA-VR-A8EQ-01 3 173999610 173999610 A C NLGN1 3'UTR 0.12 TCGA-VR-A8EQ-01 3 28617801 28617801 T C LINC00693 RNA 0.39 TCGA-VR-A8EQ-01 3 3076351 3076351 G A CNTN4 Missense_Mutation p.E607K 0.42 deleterious(0.03) benign(0.107) TCGA-VR-A8EQ-01 3 36588891 36588891 A G STAC 3'UTR 0.35 TCGA-VR-A8EQ-01 3 40553908 40553908 C T ZNF620 Missense_Mutation p.T56M 0.23 deleterious(0) benign(0.05) TCGA-VR-A8EQ-01 3 46401294 46401294 A T CCR2 Missense_Mutation p.K356N 0.40 tolerated(0.11) benign(0.004) TCGA-VR-A8EQ-01 3 53856660 53856660 C T CHDH Nonsense_Mutation p.W238* 0.12 TCGA-VR-A8EQ-01 3 55543760 55543760 T G ERC2 3'UTR 0.18 TCGA-VR-A8EQ-01 3 74350929 74350929 T G CNTN3 Missense_Mutation p.K605T 0.22 tolerated(0.85) benign(0.016) TCGA-VR-A8EQ-01 4 147628266 147628266 C T TTC29 3'UTR 0.26 TCGA-VR-A8EQ-01 4 158224713 158224713 A G GRIA2 Missense_Mutation p.Q80R 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-VR-A8EQ-01 4 176554856 176554856 T G GPM6A 3'UTR 0.23 TCGA-VR-A8EQ-01 4 185941939 185941939 C T HELT 3'Flank 0.28 TCGA-VR-A8EQ-01 4 26417097 26417098 - T RBPJ Frame_Shift_Ins p.C68Lfs*27 0.27 TCGA-VR-A8EQ-01 4 88766811 88766811 A G MEPE Missense_Mutation p.D264G 0.40 deleterious(0.05) benign(0.183) TCGA-VR-A8EQ-01 5 110730420 110730420 G A CAMK4 Silent p.K133K 0.24 TCGA-VR-A8EQ-01 5 13717530 13717530 T G DNAH5 Missense_Mutation p.K4200T 0.24 possibly_damaging(0.728) TCGA-VR-A8EQ-01 5 177658481 177658481 C A PHYKPL Missense_Mutation p.V35F 0.33 deleterious(0.01) possibly_damaging(0.886) TCGA-VR-A8EQ-01 5 178505852 178505852 A C ZNF354C Missense_Mutation p.K140T 0.29 deleterious(0.01) benign(0.444) TCGA-VR-A8EQ-01 5 32071517 32071517 C A PDZD2 Missense_Mutation p.A854E 0.33 deleterious(0.01) possibly_damaging(0.701) TCGA-VR-A8EQ-01 5 39390560 39390560 T G DAB2 Missense_Mutation p.K150Q 0.16 deleterious(0) probably_damaging(0.972) TCGA-VR-A8EQ-01 6 116833249 116833249 C T FAM26E Silent p.S130S 0.18 TCGA-VR-A8EQ-01 6 126319386 126319386 G A TRMT11 Silent p.S104S 0.38 TCGA-VR-A8EQ-01 6 133595940 133595940 A C EYA4 Missense_Mutation p.N8H 0.17 tolerated_low_confidence(0.12) benign(0.404) TCGA-VR-A8EQ-01 6 165844941 165844941 G A PDE10A Missense_Mutation p.A238V 0.17 tolerated(0.87) possibly_damaging(0.532) TCGA-VR-A8EQ-01 6 20491806 20491806 C T E2F3 3'UTR 0.17 TCGA-VR-A8EQ-01 6 33130698 33130698 G A COL11A2 3'UTR 0.51 TCGA-VR-A8EQ-01 6 33289534 33289534 T C DAXX Missense_Mutation p.K57E 0.56 tolerated(0.11) possibly_damaging(0.755) TCGA-VR-A8EQ-01 6 35965589 35965589 G A SLC26A8 Missense_Mutation p.P185S 0.10 tolerated(0.07) benign(0.059) TCGA-VR-A8EQ-01 6 44922333 44922333 A G SUPT3H Missense_Mutation p.S209P 0.08 deleterious(0.03) probably_damaging(0.947) TCGA-VR-A8EQ-01 6 45515487 45515487 C T RUNX2 3'UTR 0.56 TCGA-VR-A8EQ-01 6 46669758 46669758 T C TDRD6 3'UTR 0.35 TCGA-VR-A8EQ-01 6 64430573 64430573 A - EYS Frame_Shift_Del p.Q3119Rfs*8 0.18 TCGA-VR-A8EQ-01 6 76386937 76386937 G A SENP6 Missense_Mutation p.G605R 0.41 tolerated(0.08) probably_damaging(0.92) TCGA-VR-A8EQ-01 6 86238024 86238024 C T SNX14 Missense_Mutation p.E651K 0.21 deleterious(0.01) probably_damaging(0.917) TCGA-VR-A8EQ-01 7 103766997 103766997 T C ORC5 3'UTR 0.14 TCGA-VR-A8EQ-01 7 141365000 141365000 C T KIAA1147 Silent p.V313V 0.35 TCGA-VR-A8EQ-01 7 14613990 14613990 T A DGKB Missense_Mutation p.E540D 0.12 tolerated(0.23) benign(0.168) TCGA-VR-A8EQ-01 7 147869444 147869444 G A CNTNAP2 Missense_Mutation p.G962R 0.20 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EQ-01 7 148991029 148991029 C T RP4-800G7.2 RNA 0.22 TCGA-VR-A8EQ-01 7 26231776 26231777 TG - HNRNPA2B1 3'UTR 0.26 TCGA-VR-A8EQ-01 7 43832405 43832405 C T BLVRA Nonsense_Mutation p.Q116* 0.26 TCGA-VR-A8EQ-01 7 57529025 57529025 C T ZNF716 Silent p.Y286Y 0.12 TCGA-VR-A8EQ-01 7 6210872 6210872 G A CYTH3 Missense_Mutation p.R175C 0.16 deleterious(0) possibly_damaging(0.888) TCGA-VR-A8EQ-01 7 63986623 63986623 A C ZNF680 Intron 0.31 TCGA-VR-A8EQ-01 7 6656836 6656836 C T ZNF853 Missense_Mutation p.R10W 0.20 tolerated_low_confidence(0.15) unknown(0) TCGA-VR-A8EQ-01 7 72734220 72734220 A G TRIM50 Missense_Mutation p.S141P 0.25 deleterious(0.05) possibly_damaging(0.818) TCGA-VR-A8EQ-01 7 73483633 73483633 G A ELN 3'UTR 0.26 TCGA-VR-A8EQ-01 7 86415679 86415679 G A GRM3 Missense_Mutation p.V191M 0.11 deleterious(0) probably_damaging(1) TCGA-VR-A8EQ-01 7 90836857 90836857 T C CDK14 3'UTR 0.17 TCGA-VR-A8EQ-01 7 94039079 94039079 C T COL1A2 Silent p.R327R 0.27 TCGA-VR-A8EQ-01 8 100128051 100128051 G A VPS13B Missense_Mutation p.E296K 0.09 tolerated(0.16) benign(0.305) TCGA-VR-A8EQ-01 8 103572944 103572944 T G ODF1 Missense_Mutation p.C195W 0.35 deleterious(0) probably_damaging(0.97) TCGA-VR-A8EQ-01 8 108334253 108334253 T G ANGPT1 Missense_Mutation p.T227P 0.13 deleterious(0.01) benign(0.058) TCGA-VR-A8EQ-01 8 114111134 114111134 A C CSMD3 Missense_Mutation p.S256R 0.16 deleterious(0.01) benign(0.094) TCGA-VR-A8EQ-01 8 139658917 139658917 A G COL22A1 Silent p.A1152A 0.16 TCGA-VR-A8EQ-01 8 28196758 28196758 G A PNOC Missense_Mutation p.E110K 0.14 tolerated(0.21) possibly_damaging(0.784) TCGA-VR-A8EQ-01 8 3038632 3038632 T G CSMD1 Missense_Mutation p.T1909P 0.15 probably_damaging(0.947) TCGA-VR-A8EQ-01 8 3216778 3216778 A G CSMD1 Missense_Mutation p.L1067P 0.23 probably_damaging(1) TCGA-VR-A8EQ-01 8 32616855 32616855 A G NRG1 Missense_Mutation p.E326G 0.09 deleterious(0) probably_damaging(0.954) TCGA-VR-A8EQ-01 8 41469749 41469749 C T AGPAT6 Missense_Mutation p.P251L 0.17 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EQ-01 8 41580706 41580706 A T ANK1 Missense_Mutation p.N315K 0.08 deleterious(0.01) probably_damaging(1) TCGA-VR-A8EQ-01 8 59718354 59718354 C T TOX 3'UTR 0.11 TCGA-VR-A8EQ-01 8 67357611 67357611 G A ADHFE1 Missense_Mutation p.G171E 0.40 deleterious(0.02) possibly_damaging(0.837) TCGA-VR-A8EQ-01 8 72987567 72987567 C T TRPA1 Silent p.P26P 0.21 TCGA-VR-A8EQ-01 8 77766384 77766384 C T ZFHX4 Silent p.P2409P 0.10 TCGA-VR-A8EQ-01 8 89086899 89086899 G A MMP16 Missense_Mutation p.R386W 0.27 deleterious(0) probably_damaging(0.956) TCGA-VR-A8EQ-01 9 120475211 120475211 T G TLR4 Missense_Mutation p.L269V 0.16 tolerated(0.35) benign(0.004) TCGA-VR-A8EQ-01 9 123366772 123366772 C T MEGF9 3'UTR 0.17 TCGA-VR-A8EQ-01 9 125486279 125486279 A G OR1L4 Missense_Mutation p.K4R 0.18 tolerated(0.83) benign(0.146) TCGA-VR-A8EQ-01 9 125512401 125512401 T G OR1L6 Missense_Mutation p.V92G 0.38 tolerated(0.06) benign(0.001) TCGA-VR-A8EQ-01 9 136536709 136536709 G A SARDH Silent p.H758H 0.17 TCGA-VR-A8EQ-01 9 139256519 139256519 G A DNLZ Missense_Mutation p.P161L 0.12 tolerated(0.52) benign(0.007) TCGA-VR-A8EQ-01 9 139391546 139391546 C T NOTCH1 Silent p.S2215S 0.31 TCGA-VR-A8EQ-01 9 139412280 139412280 C T NOTCH1 Silent p.E455E 0.33 TCGA-VR-A8EQ-01 9 140355171 140355171 G A PNPLA7 Missense_Mutation p.T1287M 0.32 deleterious(0) probably_damaging(0.994) TCGA-VR-A8EQ-01 9 14788929 14788929 C T FREM1 Missense_Mutation p.D1389N 0.36 tolerated(0.29) benign(0.003) TCGA-VR-A8EQ-01 9 23690995 23690995 T G ELAVL2 3'UTR 0.41 TCGA-VR-A8EQ-01 9 71114230 71114230 G A PGM5 Missense_Mutation p.A523T 0.14 deleterious(0) benign(0.281) TCGA-VR-A8EQ-01 X 101382235 101382235 G A TCEAL2 Missense_Mutation p.G145R 0.50 deleterious(0) probably_damaging(0.988) TCGA-VR-A8EQ-01 X 110653364 110653364 G A DCX Missense_Mutation p.T169M 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-VR-A8EQ-01 X 111698082 111698082 A C ZCCHC16 Missense_Mutation p.Q42H 0.33 deleterious(0.04) probably_damaging(0.948) TCGA-VR-A8EQ-01 X 117033206 117033206 A C KLHL13 Missense_Mutation p.F548V 0.54 tolerated(0.52) probably_damaging(0.971) TCGA-VR-A8EQ-01 X 136652106 136652106 T G ZIC3 Silent p.S427S 0.50 TCGA-VR-A8EQ-01 X 138664411 138664411 T G MCF2 3'Flank 0.48 TCGA-VR-A8EQ-01 X 140983147 140983147 A G MAGEC3 Silent p.G334G 0.13 TCGA-VR-A8EQ-01 X 144906856 144906856 G A SLITRK2 3'UTR 0.33 TCGA-VR-A8EQ-01 X 148081993 148081993 G A AFF2 3'UTR 0.16 TCGA-VR-A8EQ-01 X 152773854 152773854 G A BGN Missense_Mutation p.R353H 0.58 deleterious(0) probably_damaging(0.994) TCGA-VR-A8EQ-01 X 153134086 153134086 G A L1CAM Silent p.T492T 0.39 TCGA-VR-A8EQ-01 X 30237928 30237928 G C MAGEB2 3'UTR 0.47 TCGA-VR-A8EQ-01 X 3238841 3238841 C T MXRA5 Missense_Mutation p.A1629T 0.38 tolerated(0.61) benign(0.001) TCGA-VR-A8EQ-01 X 3242385 3242385 C T MXRA5 Silent p.T447T 0.54 TCGA-VR-A8EQ-01 X 55479467 55479467 A G MAGEH1 Silent p.%3D 0.29 TCGA-VR-A8EQ-01 X 56291946 56291946 C A KLF8 Missense_Mutation p.L139M 0.76 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EQ-01 X 70373312 70373312 G A NLGN3 Intron 0.57 TCGA-VR-A8ER-01 10 49996594 49996594 A T WDFY4 Missense_Mutation p.E1276D 0.25 tolerated(0.15) benign(0.008) TCGA-VR-A8ER-01 11 34186322 34186322 G A ABTB2 Silent p.P633P 0.64 TCGA-VR-A8ER-01 11 55432949 55432949 C G OR4C6 Missense_Mutation p.H103D 0.40 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-VR-A8ER-01 11 62886317 62886317 C T SLC22A24 Intron 0.58 TCGA-VR-A8ER-01 12 133682650 133682650 C T ZNF140 Missense_Mutation p.H263Y 0.23 deleterious(0) probably_damaging(0.997) TCGA-VR-A8ER-01 12 2912662 2912662 T A FKBP4 3'UTR 0.29 TCGA-VR-A8ER-01 12 40077922 40077922 G T C12orf40 Intron 0.27 TCGA-VR-A8ER-01 12 5026110 5026110 C G KCNA1 3'UTR 0.30 TCGA-VR-A8ER-01 12 53663130 53663130 C A ESPL1 Missense_Mutation p.A135D 0.40 tolerated(0.5) benign(0.157) TCGA-VR-A8ER-01 12 54424465 54424469 AAAAA - HOXC6 3'UTR 0.29 TCGA-VR-A8ER-01 12 54635356 54635356 T A CBX5 3'UTR 0.33 TCGA-VR-A8ER-01 13 52342254 52342254 C G DHRS12 3'UTR 0.50 TCGA-VR-A8ER-01 14 92074645 92074645 A T CATSPERB Missense_Mutation p.M901K 0.49 tolerated(1) benign(0) TCGA-VR-A8ER-01 15 34105086 34105086 G A RYR3 Nonsense_Mutation p.W3427* 0.34 TCGA-VR-A8ER-01 15 43367261 43367261 G A UBR1 Silent p.F148F 0.40 TCGA-VR-A8ER-01 15 44887495 44887495 T A SPG11 Missense_Mutation p.S1533C 0.21 tolerated(0.06) possibly_damaging(0.823) TCGA-VR-A8ER-01 15 45410283 45410283 T C DUOXA1 Intron 0.31 TCGA-VR-A8ER-01 15 52244058 52244058 G A LEO1 Missense_Mutation p.R532C 0.34 deleterious(0.01) benign(0.432) TCGA-VR-A8ER-01 15 72050278 72050278 C T THSD4 Missense_Mutation p.S818L 0.36 deleterious(0) benign(0.114) TCGA-VR-A8ER-01 15 90931587 90931587 A G IQGAP1 Missense_Mutation p.D5G 0.33 deleterious_low_confidence(0.03) benign(0.003) TCGA-VR-A8ER-01 16 20439186 20439186 C A ACSM5 Missense_Mutation p.T333N 0.23 deleterious(0.04) benign(0.128) TCGA-VR-A8ER-01 16 69349973 69349973 G A VPS4A Silent p.A28A 0.09 TCGA-VR-A8ER-01 16 90021666 90021666 C T DEF8 Missense_Mutation p.R133C 0.38 deleterious(0.01) probably_damaging(0.972) TCGA-VR-A8ER-01 17 18925357 18925357 C T GRAP Missense_Mutation p.R190H 0.49 tolerated(0.6) benign(0.003) TCGA-VR-A8ER-01 17 21911549 21911549 G C RP11-744K17.9 RNA 0.19 TCGA-VR-A8ER-01 17 36935734 36935734 T C PIP4K2B Missense_Mutation p.M186V 0.31 deleterious(0.03) benign(0.345) TCGA-VR-A8ER-01 17 58524943 58524943 C A APPBP2 Nonstop_Mutation p.*586Lext*70 0.08 TCGA-VR-A8ER-01 17 7578223 7578223 C T TP53 Missense_Mutation p.R209K 0.55 tolerated(0.91) benign(0.003) TCGA-VR-A8ER-01 17 7578265 7578265 A T TP53 Missense_Mutation p.I195N 0.59 deleterious(0) probably_damaging(1) TCGA-VR-A8ER-01 19 14247408 14247408 A C ASF1B 5'UTR 0.35 TCGA-VR-A8ER-01 19 1853853 1853853 C T KLF16 3'UTR 0.29 TCGA-VR-A8ER-01 19 22271249 22271249 G T ZNF257 Nonsense_Mutation p.E233* 0.21 TCGA-VR-A8ER-01 19 2250424 2250424 C T AMH Silent p.Y167Y 0.33 TCGA-VR-A8ER-01 19 24309076 24309076 C G ZNF254 Missense_Mutation p.Q92E 0.37 tolerated(0.17) benign(0.049) TCGA-VR-A8ER-01 19 57910927 57910927 C T ZNF548 Silent p.S436S 0.26 TCGA-VR-A8ER-01 1 114520177 114520177 G T HIPK1 3'UTR 0.30 TCGA-VR-A8ER-01 1 155319190 155319190 C A ASH1L Missense_Mutation p.Q2494H 0.65 deleterious_low_confidence(0.02) possibly_damaging(0.542) TCGA-VR-A8ER-01 1 165218762 165218762 G A LMX1A Nonsense_Mutation p.R127* 0.48 TCGA-VR-A8ER-01 1 180601390 180601390 A C XPR1 Missense_Mutation p.Q18P 0.10 deleterious(0) probably_damaging(0.988) TCGA-VR-A8ER-01 1 244816601 244816601 G T DESI2 5'UTR 0.36 TCGA-VR-A8ER-01 1 93599533 93599533 A G MTF2 Missense_Mutation p.I439V 0.41 tolerated(0.56) benign(0.002) TCGA-VR-A8ER-01 20 308959 308959 C T SOX12 3'UTR 0.45 TCGA-VR-A8ER-01 20 52185370 52185370 G C ZNF217 3'UTR 0.44 TCGA-VR-A8ER-01 21 33063188 33063188 G A SCAF4 Missense_Mutation p.P603S 0.42 possibly_damaging(0.901) TCGA-VR-A8ER-01 2 116548752 116548752 T A DPP10 Missense_Mutation p.Y547N 0.22 deleterious(0.05) benign(0.426) TCGA-VR-A8ER-01 2 153616651 153616651 C A ARL6IP6 3'UTR 0.34 TCGA-VR-A8ER-01 2 178098960 178098960 C G NFE2L2 Missense_Mutation p.D29H 0.22 deleterious(0) probably_damaging(1) TCGA-VR-A8ER-01 2 201688031 201688031 C T BZW1 3'Flank 0.26 TCGA-VR-A8ER-01 2 201845896 201845896 G C FAM126B 3'UTR 0.27 TCGA-VR-A8ER-01 2 26569221 26569221 C G EPT1 Intron 0.38 TCGA-VR-A8ER-01 2 40340833 40340833 C T SLC8A1 3'Flank 0.30 TCGA-VR-A8ER-01 2 74902937 74902937 G A SEMA4F Missense_Mutation p.R515H 0.33 tolerated(0.06) probably_damaging(0.996) TCGA-VR-A8ER-01 2 86947764 86947764 G A RMND5A 5'UTR 0.12 TCGA-VR-A8ER-01 3 100105093 100105093 C T TOMM70A Silent p.E198E 0.22 TCGA-VR-A8ER-01 3 10377897 10377897 C T ATP2B2 Intron 0.33 TCGA-VR-A8ER-01 3 124538659 124538659 A G ITGB5 Missense_Mutation p.L322P 0.18 deleterious(0) probably_damaging(0.991) TCGA-VR-A8ER-01 3 164059129 164059129 C G MIR720 RNA 0.11 TCGA-VR-A8ER-01 3 170607524 170607524 T C EIF5A2 3'UTR 0.16 TCGA-VR-A8ER-01 3 172428680 172428680 T C NCEH1 Missense_Mutation p.K64R 0.23 tolerated(0.08) benign(0.117) TCGA-VR-A8ER-01 3 180328087 180328087 C G TTC14 Missense_Mutation p.H690Q 0.18 tolerated_low_confidence(0.32) unknown(0) TCGA-VR-A8ER-01 3 28616545 28616545 C G LINC00693 RNA 0.39 TCGA-VR-A8ER-01 3 50150892 50150892 C T RBM5 Missense_Mutation p.S511F 0.53 deleterious(0.04) benign(0.133) TCGA-VR-A8ER-01 3 53326271 53326271 T C DCP1A Missense_Mutation p.H404R 0.60 deleterious(0.03) possibly_damaging(0.543) TCGA-VR-A8ER-01 3 97851821 97851821 C G OR5H1 Missense_Mutation p.L94V 0.15 deleterious(0.02) benign(0.027) TCGA-VR-A8ER-01 4 162697208 162697208 G T FSTL5 Missense_Mutation p.T143N 0.41 tolerated(0.2) benign(0.001) TCGA-VR-A8ER-01 4 165879138 165879138 G C FAM218A 3'UTR 0.59 TCGA-VR-A8ER-01 4 53494205 53494205 C T USP46 Silent p.A81A 0.27 TCGA-VR-A8ER-01 5 148207663 148207664 - T ADRB2 3'UTR 0.43 TCGA-VR-A8ER-01 5 150031524 150031524 C A SYNPO 3'UTR 0.29 TCGA-VR-A8ER-01 5 65349797 65349797 A G ERBB2IP Missense_Mutation p.Y884C 0.35 deleterious(0.02) benign(0.004) TCGA-VR-A8ER-01 5 68423939 68423939 G C SLC30A5 Missense_Mutation p.E703Q 0.21 deleterious(0.03) possibly_damaging(0.868) TCGA-VR-A8ER-01 5 71493451 71493451 A T MAP1B Missense_Mutation p.R1423S 0.24 possibly_damaging(0.787) TCGA-VR-A8ER-01 6 17292224 17292224 C T RBM24 Silent p.Y195Y 0.26 TCGA-VR-A8ER-01 6 35205712 35205712 G A SCUBE3 Missense_Mutation p.S249N 0.32 deleterious(0.01) benign(0.334) TCGA-VR-A8ER-01 6 42153445 42153445 A G GUCA1B Missense_Mutation p.F150L 0.16 tolerated(0.13) possibly_damaging(0.614) TCGA-VR-A8ER-01 6 45514591 45514591 A T RUNX2 Missense_Mutation p.D372V 0.32 deleterious(0.01) probably_damaging(0.998) TCGA-VR-A8ER-01 6 46107802 46107802 A G ENPP4 Missense_Mutation p.E161G 0.19 tolerated(0.07) benign(0.014) TCGA-VR-A8ER-01 6 56323408 56323408 A G DST 3'UTR 0.16 TCGA-VR-A8ER-01 6 96654285 96654285 A T FUT9 3'UTR 0.19 TCGA-VR-A8ER-01 7 100169908 100169908 G A SAP25 3'UTR 0.37 TCGA-VR-A8ER-01 7 100677696 100677696 C T MUC17 Missense_Mutation p.A1000V 0.10 probably_damaging(0.97) TCGA-VR-A8ER-01 7 114331013 114331013 G C FOXP2 3'UTR 0.33 TCGA-VR-A8ER-01 7 44161677 44161677 C T POLD2 5'UTR 0.27 TCGA-VR-A8ER-01 7 8791929 8791929 A C NXPH1 3'UTR 0.40 TCGA-VR-A8ER-01 7 98579513 98579513 G A TRRAP Missense_Mutation p.S2912N 0.11 probably_damaging(0.975) TCGA-VR-A8ER-01 8 101018284 101018284 T A RGS22 Silent p.L805L 0.12 TCGA-VR-A8ER-01 8 110492355 110492355 A C PKHD1L1 Missense_Mutation p.Y3105S 0.25 deleterious(0) benign(0.428) TCGA-VR-A8ER-01 8 116616240 116616240 G A TRPS1 Silent p.S652S 0.49 TCGA-VR-A8ER-01 8 39356919 39356919 A G ADAM3A RNA 0.22 TCGA-VR-A8ER-01 8 61496838 61496838 C T RAB2A Silent p.Y86Y 0.46 TCGA-VR-A8ER-01 9 131702968 131702968 T C PHYHD1 Missense_Mutation p.S219P 0.71 deleterious_low_confidence(0.01) benign(0.001) TCGA-VR-A8ER-01 9 71629038 71629039 - GCGGCGGCG PRKACG 5'UTR 0.50 TCGA-VR-A8ER-01 9 84606906 84606906 C T SPATA31D1 Silent p.L507L 0.15 TCGA-VR-A8ER-01 X 117819759 117819759 G A DOCK11 Missense_Mutation p.A2071T 0.74 tolerated_low_confidence(0.11) benign(0) TCGA-VR-A8ER-01 X 125954650 125954650 G A CXorf64 Missense_Mutation p.G10E 0.70 tolerated(0.2) benign(0.037) TCGA-VR-A8ER-01 X 55030234 55030234 A T APEX2 Missense_Mutation p.H191L 0.78 deleterious(0) possibly_damaging(0.886) TCGA-VR-A8ER-01 X 57620063 57620063 C T ZXDB Missense_Mutation p.R528C 0.59 deleterious(0) probably_damaging(0.962) TCGA-VR-A8ET-01 10 52595965 52595965 T - A1CF Frame_Shift_Del p.K166Rfs*56 0.10 TCGA-VR-A8ET-01 11 76917248 76917248 G A MYO7A Splice_Site p.X1914_splice 0.10 TCGA-VR-A8ET-01 11 85396000 85396000 C T CCDC89 3'UTR 0.16 TCGA-VR-A8ET-01 13 84453964 84453964 G A SLITRK1 Missense_Mutation p.T560M 0.20 deleterious(0.02) benign(0.035) TCGA-VR-A8ET-01 15 64966761 64966761 C T ZNF609 Nonsense_Mutation p.R570* 0.14 TCGA-VR-A8ET-01 16 1570144 1570144 G A IFT140 Silent p.D1287D 0.21 TCGA-VR-A8ET-01 16 30998318 30998318 A T HSD3B7 Missense_Mutation p.Y230F 0.18 deleterious(0) probably_damaging(0.999) TCGA-VR-A8ET-01 17 7984752 7984752 C T AC129492.6 3'UTR 0.16 TCGA-VR-A8ET-01 18 31599294 31599294 T A NOL4 Missense_Mutation p.E348D 0.17 tolerated_low_confidence(0.38) probably_damaging(0.994) TCGA-VR-A8ET-01 1 114306576 114306576 T A RSBN1 3'UTR 0.09 TCGA-VR-A8ET-01 1 248058969 248058969 C A OR2W3 Silent p.L27L 0.14 TCGA-VR-A8ET-01 1 27609833 27609833 C T WDTC1 Silent p.L62L 0.11 TCGA-VR-A8ET-01 2 106690395 106690395 T G C2orf40 Missense_Mutation p.F61V 0.10 deleterious(0) probably_damaging(0.996) TCGA-VR-A8ET-01 2 179424596 179424596 C G TTN Missense_Mutation p.D28755H 0.29 TCGA-VR-A8ET-01 2 95943191 95943191 G A PROM2 Silent p.E284E 0.12 TCGA-VR-A8ET-01 2 95943192 95943192 C G PROM2 Missense_Mutation p.P285A 0.12 tolerated(0.38) benign(0.024) TCGA-VR-A8ET-01 3 114070249 114070249 C T ZBTB20 Missense_Mutation p.D226N 0.22 tolerated(0.07) possibly_damaging(0.689) TCGA-VR-A8ET-01 3 49694019 49694019 G T BSN Missense_Mutation p.G2344C 0.19 unknown(0) TCGA-VR-A8ET-01 4 154395024 154395024 C A KIAA0922 Missense_Mutation p.P75T 0.17 tolerated(0.57) benign(0.03) TCGA-VR-A8ET-01 4 52782876 52782876 G A DCUN1D4 3'UTR 0.13 TCGA-VR-A8ET-01 5 147040519 147040519 G A JAKMIP2 Missense_Mutation p.R207W 0.15 deleterious(0) probably_damaging(0.992) TCGA-VR-A8ET-01 5 175772553 175772553 C G SIMC1 3'UTR 0.23 TCGA-VR-A8ET-01 5 68522214 68522214 A G MRPS36 Missense_Mutation p.N31S 0.07 tolerated(0.49) benign(0.016) TCGA-VR-A8ET-01 6 116575240 116575240 A T TSPYL4 5'UTR 0.15 TCGA-VR-A8ET-01 7 34094885 34094885 A C BMPER Missense_Mutation p.K299N 0.13 tolerated(0.19) benign(0.031) TCGA-VR-A8ET-01 7 97619361 97619361 C A OCM2 Missense_Mutation p.C19F 0.05 tolerated(0.31) benign(0.424) TCGA-VR-A8EU-01 10 104356918 104356918 G A SUFU Missense_Mutation p.E260K 0.50 tolerated(0.05) benign(0.178) TCGA-VR-A8EU-01 10 134896022 134896022 C T GPR123-AS1 3'Flank 0.22 TCGA-VR-A8EU-01 10 18250587 18250587 A T SLC39A12 Missense_Mutation p.R113S 0.32 deleterious(0) possibly_damaging(0.855) TCGA-VR-A8EU-01 10 37520407 37520407 A C ANKRD30A 3'UTR 0.27 TCGA-VR-A8EU-01 10 37520412 37520412 G A ANKRD30A 3'UTR 0.23 TCGA-VR-A8EU-01 10 69672363 69672363 A G SIRT1 Missense_Mutation p.Y497C 0.17 deleterious(0.01) benign(0.03) TCGA-VR-A8EU-01 10 88854347 88854347 G A GLUD1 Silent p.R60R 0.36 TCGA-VR-A8EU-01 11 22396367 22396367 G T SLC17A6 Missense_Mutation p.A370S 0.42 deleterious(0) possibly_damaging(0.855) TCGA-VR-A8EU-01 11 44073269 44073269 G A ACCSL Missense_Mutation p.E258K 0.27 deleterious(0.03) benign(0.297) TCGA-VR-A8EU-01 11 49831413 49831413 A T RP11-707M1.1 RNA 0.18 TCGA-VR-A8EU-01 11 60898381 60898381 C T VPS37C 3'UTR 0.32 TCGA-VR-A8EU-01 11 684948 684948 G T DEAF1 Missense_Mutation p.P274T 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-VR-A8EU-01 12 117672482 117672482 G A NOS1 Silent p.F1075F 0.19 TCGA-VR-A8EU-01 12 123187116 123187116 C T HCAR2 Missense_Mutation p.V239I 0.19 tolerated(0.17) possibly_damaging(0.832) TCGA-VR-A8EU-01 12 133795440 133795440 C T ANHX 3'UTR 0.36 TCGA-VR-A8EU-01 12 21614963 21614963 A G PYROXD1 Missense_Mutation p.E301G 0.12 tolerated(0.07) benign(0.048) TCGA-VR-A8EU-01 12 29423409 29423409 C G FAR2 Silent p.G9G 0.21 TCGA-VR-A8EU-01 12 32908126 32908126 T C YARS2 Missense_Mutation p.D228G 0.41 deleterious(0) probably_damaging(1) TCGA-VR-A8EU-01 12 40153643 40153643 G A SLC2A13 3'UTR 0.25 TCGA-VR-A8EU-01 12 49416552 49416552 G A KMT2D Nonsense_Mutation p.Q5387* 0.31 TCGA-VR-A8EU-01 12 5021930 5021930 T A KCNA1 Missense_Mutation p.N462K 0.28 tolerated_low_confidence(0.9) benign(0.005) TCGA-VR-A8EU-01 12 54676230 54676230 G C HNRNPA1 Silent p.L181L 0.14 TCGA-VR-A8EU-01 12 57037213 57037213 T A ATP5B Missense_Mutation p.I256F 0.23 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-VR-A8EU-01 12 65134404 65134404 T C GNS Missense_Mutation p.D286G 0.30 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EU-01 12 8929721 8929721 T C RIMKLB 3'UTR 0.37 TCGA-VR-A8EU-01 13 21721357 21721357 G A SAP18 Missense_Mutation p.R132K 0.24 tolerated(0.16) possibly_damaging(0.487) TCGA-VR-A8EU-01 13 23911207 23911207 C T SACS Missense_Mutation p.G2270S 0.20 probably_damaging(0.999) TCGA-VR-A8EU-01 13 51825970 51825970 G C FAM124A Missense_Mutation p.G192A 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-VR-A8EU-01 13 52603541 52603541 C T UTP14C Missense_Mutation p.P201S 0.41 deleterious(0) probably_damaging(0.933) TCGA-VR-A8EU-01 13 93518770 93518770 C A GPC5 3'UTR 0.25 TCGA-VR-A8EU-01 14 106866605 106866605 C A IGHV3-38 Missense_Mutation p.S50I 0.71 deleterious_low_confidence(0.02) benign(0.081) TCGA-VR-A8EU-01 14 21961063 21961063 G A TOX4 Missense_Mutation p.A430T 0.17 tolerated_low_confidence(0.32) probably_damaging(0.956) TCGA-VR-A8EU-01 14 22783121 22783121 C G TRAV40 Silent p.T29T 0.31 TCGA-VR-A8EU-01 14 23652132 23652132 G C SLC7A8 5'UTR 0.28 TCGA-VR-A8EU-01 14 72128161 72128161 G A SIPA1L1 Silent p.P744P 0.29 TCGA-VR-A8EU-01 15 25330543 25330543 G A SNORD116-18 RNA 0.08 TCGA-VR-A8EU-01 15 48704821 48704821 G A FBN1 Missense_Mutation p.P2724L 0.16 possibly_damaging(0.651) TCGA-VR-A8EU-01 15 90628068 90628068 G A IDH2 Silent p.G417G 0.20 TCGA-VR-A8EU-01 15 90628069 90628069 C A IDH2 Missense_Mutation p.G417V 0.20 tolerated_low_confidence(0.63) probably_damaging(1) TCGA-VR-A8EU-01 16 19547383 19547383 C T CCP110 Missense_Mutation p.T131M 0.17 tolerated(0.06) benign(0.386) TCGA-VR-A8EU-01 16 31073108 31073108 T A ZNF668 Nonsense_Mutation p.K404* 0.29 TCGA-VR-A8EU-01 16 31073109 31073109 C A ZNF668 Missense_Mutation p.F99L 0.28 benign(0) TCGA-VR-A8EU-01 16 4938128 4938128 G C PPL Missense_Mutation p.S830C 0.20 deleterious(0.02) benign(0.12) TCGA-VR-A8EU-01 16 57712190 57712190 G T GPR97 Missense_Mutation p.V152F 0.17 deleterious(0) benign(0.171) TCGA-VR-A8EU-01 16 67976482 67976482 C T LCAT Missense_Mutation p.E178K 0.45 tolerated(0.74) benign(0.005) TCGA-VR-A8EU-01 16 89779185 89779185 A G VPS9D1 Intron 0.37 TCGA-VR-A8EU-01 16 89804679 89804679 C G FANCA 3'UTR 0.22 TCGA-VR-A8EU-01 17 10435052 10435052 A C MYH2 Missense_Mutation p.I865M 0.09 tolerated(0.21) benign(0.03) TCGA-VR-A8EU-01 17 35633933 35633933 G T ACACA Silent p.A265A 0.47 TCGA-VR-A8EU-01 17 48272618 48272618 C A COL1A1 Missense_Mutation p.G425V 0.47 unknown(0) TCGA-VR-A8EU-01 17 67080613 67080613 T C ABCA6 Missense_Mutation p.N1407S 0.27 deleterious(0.02) benign(0.217) TCGA-VR-A8EU-01 17 73316406 73316406 G A GRB2 3'UTR 0.40 TCGA-VR-A8EU-01 17 74898723 74898723 T C MGAT5B Missense_Mutation p.L150P 0.20 deleterious(0) probably_damaging(1) TCGA-VR-A8EU-01 17 7577515 7577517 TGA - TP53 In_Frame_Del p.I255del 0.72 TCGA-VR-A8EU-01 17 79005144 79005144 T A BAIAP2 5'Flank 0.15 TCGA-VR-A8EU-01 18 33077820 33077820 T C INO80C Missense_Mutation p.I7V 0.05 deleterious_low_confidence(0.01) benign(0.062) TCGA-VR-A8EU-01 18 44037339 44037339 T G RNF165 3'UTR 0.21 TCGA-VR-A8EU-01 18 54815059 54815059 C T BOD1L2 Silent p.S172S 0.21 TCGA-VR-A8EU-01 18 59974033 59974033 G T KIAA1468 3'UTR 0.25 TCGA-VR-A8EU-01 18 64235834 64235834 C A CDH19 Missense_Mutation p.Q103H 0.26 deleterious(0) probably_damaging(0.933) TCGA-VR-A8EU-01 19 10602767 10602767 C T KEAP1 Missense_Mutation p.V271M 0.19 deleterious(0) probably_damaging(0.986) TCGA-VR-A8EU-01 19 1575127 1575148 GCTGCTGGCAAGTGCCAGAAGG - MBD3 3'Flank 0.26 TCGA-VR-A8EU-01 19 21720005 21720005 C A ZNF429 Missense_Mutation p.L384I 0.31 deleterious(0) probably_damaging(0.991) TCGA-VR-A8EU-01 19 37117924 37117924 G A ZNF382 Silent p.T375T 0.56 TCGA-VR-A8EU-01 19 44680327 44680327 A C ZNF226 Silent p.G304G 0.19 TCGA-VR-A8EU-01 19 45656613 45656613 G C NKPD1 Nonsense_Mutation p.S361* 0.36 TCGA-VR-A8EU-01 19 45809917 45809917 G C CKM 3'UTR 0.19 TCGA-VR-A8EU-01 19 49464862 49464862 C T BAX 3'UTR 0.25 TCGA-VR-A8EU-01 19 54395792 54395792 G A PRKCG Missense_Mutation p.R239Q 0.18 deleterious(0.03) benign(0.434) TCGA-VR-A8EU-01 19 56001756 56001756 G A SSC5D Silent p.T189T 0.27 TCGA-VR-A8EU-01 1 109008025 109008025 G T NBPF6 Missense_Mutation p.G547W 0.54 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EU-01 1 116243784 116243784 T G CASQ2 3'UTR 0.36 TCGA-VR-A8EU-01 1 155296483 155296483 T C RUSC1 Silent p.T658T 0.41 TCGA-VR-A8EU-01 1 156374385 156374386 - T C1orf61 Frame_Shift_Ins p.K145Efs*19 0.34 TCGA-VR-A8EU-01 1 157545234 157545234 C T FCRL4 3'UTR 0.39 TCGA-VR-A8EU-01 1 162344173 162344173 G A C1orf111 Nonsense_Mutation p.R151* 0.30 TCGA-VR-A8EU-01 1 171560972 171560972 G C PRRC2C Missense_Mutation p.E2814Q 0.17 possibly_damaging(0.792) TCGA-VR-A8EU-01 1 196436841 196436841 T G KCNT2 Missense_Mutation p.N179H 0.22 deleterious(0) probably_damaging(0.991) TCGA-VR-A8EU-01 1 206667323 206667323 C T IKBKE Missense_Mutation p.R706W 0.28 deleterious(0) possibly_damaging(0.667) TCGA-VR-A8EU-01 1 226108914 226108914 C T RP4-559A3.7 Missense_Mutation p.R190Q 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.905) TCGA-VR-A8EU-01 1 23520239 23520239 C T HTR1D Missense_Mutation p.M158I 0.25 deleterious(0.01) probably_damaging(0.989) TCGA-VR-A8EU-01 1 24078325 24078325 C T TCEB3 Silent p.Y436Y 0.12 TCGA-VR-A8EU-01 1 247752160 247752160 C T OR2G2 Silent p.L167L 0.36 TCGA-VR-A8EU-01 1 248436732 248436732 G A OR2T33 Nonsense_Mutation p.R129* 0.13 TCGA-VR-A8EU-01 1 40929164 40929164 A G ZFP69B Missense_Mutation p.Y503C 0.22 deleterious(0) probably_damaging(0.936) TCGA-VR-A8EU-01 20 13765855 13765855 C T NDUFAF5 Silent p.F47F 0.07 TCGA-VR-A8EU-01 21 37665662 37665662 G A DOPEY2 Silent p.P2230P 0.31 TCGA-VR-A8EU-01 22 16287805 16287805 C A POTEH Missense_Mutation p.W27C 0.05 deleterious_low_confidence(0.04) possibly_damaging(0.838) TCGA-VR-A8EU-01 22 26164791 26164791 G T MYO18B Missense_Mutation p.G303V 0.24 deleterious_low_confidence(0.05) benign(0.04) TCGA-VR-A8EU-01 22 46505687 46505687 C T FLJ27365 Missense_Mutation p.R94C 0.24 deleterious_low_confidence(0.02) possibly_damaging(0.835) TCGA-VR-A8EU-01 22 50728477 50728477 G A PLXNB2 Silent p.N179N 0.62 TCGA-VR-A8EU-01 2 105882187 105882187 T G TGFBRAP1 3'UTR 0.38 TCGA-VR-A8EU-01 2 133174826 133174826 C A GPR39 Missense_Mutation p.H71N 0.13 deleterious(0) probably_damaging(0.992) TCGA-VR-A8EU-01 2 158272436 158272436 G A CYTIP Missense_Mutation p.T278M 0.43 deleterious(0.02) probably_damaging(0.958) TCGA-VR-A8EU-01 2 229890706 229890706 G A PID1 Missense_Mutation p.A130V 0.17 deleterious(0.03) possibly_damaging(0.544) TCGA-VR-A8EU-01 2 240969562 240969562 G A OR6B2 Silent p.V95V 0.13 TCGA-VR-A8EU-01 2 27600274 27600275 - A ZNF513 3'UTR 0.33 TCGA-VR-A8EU-01 2 27880464 27880464 T A SUPT7L Silent p.T164T 0.15 TCGA-VR-A8EU-01 2 5841246 5841246 C T SOX11 3'UTR 0.35 TCGA-VR-A8EU-01 2 63176138 63176138 A C EHBP1 Missense_Mutation p.K754N 0.19 tolerated_low_confidence(0.19) benign(0.002) TCGA-VR-A8EU-01 3 101713621 101713621 T G RP11-221J22.1 RNA 0.17 TCGA-VR-A8EU-01 3 124351417 124351417 G A KALRN Missense_Mutation p.R79H 0.14 deleterious(0) probably_damaging(0.909) TCGA-VR-A8EU-01 3 128616490 128616490 C T ACAD9 Silent p.A190A 0.17 TCGA-VR-A8EU-01 3 138153550 138153550 C A ESYT3 5'UTR 0.12 TCGA-VR-A8EU-01 3 151493535 151493537 TGT - RP11-454C18.2 Intron 0.69 TCGA-VR-A8EU-01 3 152555233 152555233 G A P2RY1 3'UTR 0.14 TCGA-VR-A8EU-01 3 186507053 186507053 A G EIF4A2 Missense_Mutation p.I407V 0.31 tolerated(0.12) benign(0.004) TCGA-VR-A8EU-01 3 189040177 189040177 C T TPRG1 3'UTR 0.10 TCGA-VR-A8EU-01 3 195509475 195509475 A C MUC4 Silent p.L2992L 0.13 TCGA-VR-A8EU-01 3 196460740 196460740 A T PIGX Silent p.V266V 0.44 TCGA-VR-A8EU-01 3 46939390 46939390 T A PTH1R Missense_Mutation p.L120Q 0.35 tolerated(0.41) benign(0.016) TCGA-VR-A8EU-01 3 97851542 97851542 A C OR5H1 Translation_Start_Site p.M1? 0.10 deleterious(0.01) benign(0.076) TCGA-VR-A8EU-01 4 126241918 126241918 T C FAT4 Missense_Mutation p.I1451T 0.64 possibly_damaging(0.908) TCGA-VR-A8EU-01 4 44688650 44688650 T A GUF1 Silent p.I286I 0.40 TCGA-VR-A8EU-01 4 71848468 71848468 T C MOB1B 3'Flank 0.28 TCGA-VR-A8EU-01 4 83350556 83350556 T C HNRNPDL Silent p.Q96Q 0.33 TCGA-VR-A8EU-01 4 89198299 89198299 A G PPM1K Silent p.A179A 0.37 TCGA-VR-A8EU-01 4 96051071 96051071 A C BMPR1B Missense_Mutation p.Y245S 0.45 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EU-01 5 140166704 140166706 GTC - PCDHA1 In_Frame_Del p.V278del 0.13 TCGA-VR-A8EU-01 5 140306538 140306538 C A PCDHAC1 Missense_Mutation p.Q21K 0.26 deleterious(0.02) possibly_damaging(0.799) TCGA-VR-A8EU-01 5 140595516 140595516 C G PCDHB13 Silent p.L607L 0.35 TCGA-VR-A8EU-01 5 38940856 38940856 G C RICTOR 3'UTR 0.33 TCGA-VR-A8EU-01 5 89990388 89990388 G C GPR98 Missense_Mutation p.L2605F 0.16 benign(0.291) TCGA-VR-A8EU-01 5 96315139 96315139 C T LNPEP Missense_Mutation p.P106L 0.40 tolerated(0.08) benign(0.048) TCGA-VR-A8EU-01 6 134490576 134490576 G C SGK1 3'UTR 0.35 TCGA-VR-A8EU-01 6 13979008 13979008 A G RNF182 3'UTR 0.52 TCGA-VR-A8EU-01 6 169622427 169622427 C T THBS2 Silent p.T1046T 0.42 TCGA-VR-A8EU-01 6 33239849 33239849 G A RPS18 5'UTR 0.40 TCGA-VR-A8EU-01 6 33239850 33239850 C A RPS18 5'UTR 0.40 TCGA-VR-A8EU-01 6 55142277 55142277 G A HCRTR2 Missense_Mutation p.A288T 0.15 tolerated(0.53) benign(0.023) TCGA-VR-A8EU-01 6 70866605 70866605 A T COL19A1 Missense_Mutation p.K761I 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-VR-A8EU-01 6 70925775 70925775 C A COL9A1 3'UTR 0.27 TCGA-VR-A8EU-01 6 96034899 96034899 A G MANEA Intron 0.29 TCGA-VR-A8EU-01 7 100170802 100170802 G A SAP25 5'UTR 0.18 TCGA-VR-A8EU-01 7 100685536 100685536 C A MUC17 Missense_Mutation p.S3613R 0.58 benign(0.002) TCGA-VR-A8EU-01 7 102716296 102716296 G T ARMC10 Missense_Mutation p.W71L 0.61 tolerated(0.5) benign(0) TCGA-VR-A8EU-01 7 102716313 102716313 A T ARMC10 Nonsense_Mutation p.K77* 0.63 TCGA-VR-A8EU-01 7 128487788 128487788 C A FLNC Missense_Mutation p.D1442E 0.20 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EU-01 7 154753307 154753307 T C PAXIP1 Missense_Mutation p.M727V 0.36 deleterious(0.02) unknown(0) TCGA-VR-A8EU-01 7 20453254 20453254 G C ITGB8 3'UTR 0.23 TCGA-VR-A8EU-01 7 21551132 21551132 T C SP4 3'UTR 0.32 TCGA-VR-A8EU-01 7 21584746 21584746 T A DNAH11 Missense_Mutation p.H158Q 0.18 benign(0.023) TCGA-VR-A8EU-01 7 48654945 48654945 C A ABCA13 Missense_Mutation p.L4937I 0.21 possibly_damaging(0.499) TCGA-VR-A8EU-01 7 8473968 8473968 A T NXPH1 5'UTR 0.33 TCGA-VR-A8EU-01 7 94297698 94297698 A C PEG10 3'UTR 0.38 TCGA-VR-A8EU-01 7 94935642 94935642 A C PON1 Missense_Mutation p.I245M 0.12 deleterious(0) probably_damaging(1) TCGA-VR-A8EU-01 8 116423294 116423294 C T TRPS1 3'UTR 0.47 TCGA-VR-A8EU-01 8 124664837 124664837 G A KLHL38 Silent p.A110A 0.40 TCGA-VR-A8EU-01 8 145095047 145095047 C A SPATC1 Missense_Mutation p.T150K 0.13 tolerated(0.08) benign(0.032) TCGA-VR-A8EU-01 8 145584808 145584808 C A SLC52A2 3'UTR 0.45 TCGA-VR-A8EU-01 8 1645353 1645353 C T DLGAP2 Missense_Mutation p.A866V 0.15 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EU-01 8 2823409 2823409 G T CSMD1 Missense_Mutation p.N3056K 0.32 probably_damaging(0.999) TCGA-VR-A8EU-01 8 42297137 42297137 T A SLC20A2 Silent p.V255V 0.19 TCGA-VR-A8EU-01 8 77776814 77776814 G T ZFHX4 3'UTR 0.27 TCGA-VR-A8EU-01 9 107554264 107554264 G A ABCA1 Missense_Mutation p.R1925W 0.81 deleterious(0) possibly_damaging(0.676) TCGA-VR-A8EU-01 9 121929725 121929725 C T BRINP1 Silent p.S641S 0.17 TCGA-VR-A8EU-01 9 137982066 137982066 G T OLFM1 Missense_Mutation p.S41I 0.53 deleterious(0) possibly_damaging(0.727) TCGA-VR-A8EU-01 9 137982067 137982067 C T OLFM1 Silent p.S41S 0.55 TCGA-VR-A8EU-01 9 14748440 14748440 G T FREM1 Missense_Mutation p.L1919I 0.19 tolerated(0.27) benign(0.003) TCGA-VR-A8EU-01 9 39176040 39176040 C T CNTNAP3 Missense_Mutation p.R326H 0.27 tolerated(0.39) benign(0.004) TCGA-VR-A8EU-01 9 98218581 98218581 C A PTCH1 Nonsense_Mutation p.E1095* 0.42 TCGA-VR-A8EU-01 X 101098169 101098169 A C NXF5 5'UTR 0.84 TCGA-VR-A8EU-01 X 133379619 133379619 G T CCDC160 Missense_Mutation p.M263I 0.35 tolerated(0.16) benign(0.043) TCGA-VR-A8EU-01 X 3235731 3235731 G A MXRA5 Silent p.P1997P 0.41 TCGA-VR-A8EU-01 X 44949998 44949998 A T KDM6A Missense_Mutation p.Y1256F 0.33 tolerated(0.08) benign(0.144) TCGA-VR-A8EU-01 X 91874630 91874630 T C PCDH11X 3'UTR 0.74 TCGA-VR-A8EW-01 10 106074980 106074980 G A ITPRIP Missense_Mutation p.A277V 0.47 tolerated(0.35) benign(0.001) TCGA-VR-A8EW-01 10 116073779 116073779 G A AFAP1L2 Nonsense_Mutation p.Q215* 0.24 TCGA-VR-A8EW-01 10 21971160 21971160 C T MLLT10 Missense_Mutation p.S558L 0.14 tolerated(0.22) benign(0.039) TCGA-VR-A8EW-01 10 50916719 50916719 G C C10orf53 3'UTR 0.48 TCGA-VR-A8EW-01 10 55582697 55582697 G A PCDH15 Silent p.L1599L 0.09 TCGA-VR-A8EW-01 10 72358262 72358262 C A PRF1 Missense_Mutation p.Q405H 0.24 tolerated(0.15) benign(0.001) TCGA-VR-A8EW-01 10 88702246 88702246 G A MMRN2 Silent p.N765N 0.42 TCGA-VR-A8EW-01 10 96824695 96824695 G A CYP2C8 Silent p.F168F 0.05 TCGA-VR-A8EW-01 11 106856796 106856796 C G GUCY1A2 Missense_Mutation p.G122A 0.08 tolerated(0.68) benign(0.009) TCGA-VR-A8EW-01 11 57472550 57472550 A G MED19 Silent p.D123D 0.15 TCGA-VR-A8EW-01 11 70319282 70319282 G A SHANK2 Missense_Mutation p.P1749S 0.04 tolerated(0.37) possibly_damaging(0.641) TCGA-VR-A8EW-01 11 89896165 89896165 C T NAALAD2 Silent p.Y346Y 0.42 TCGA-VR-A8EW-01 12 10084889 10084889 A T CLEC2A Missense_Mutation p.F14I 0.44 tolerated(0.4) benign(0.001) TCGA-VR-A8EW-01 12 117718598 117718598 G A NOS1 Missense_Mutation p.R486C 0.11 deleterious(0) probably_damaging(0.991) TCGA-VR-A8EW-01 12 3702562 3702562 G A PRMT8 3'UTR 0.36 TCGA-VR-A8EW-01 12 80771648 80771648 C T OTOGL Silent p.D2285D 0.26 TCGA-VR-A8EW-01 13 21752663 21752663 A G MRP63 3'UTR 0.21 TCGA-VR-A8EW-01 13 45602138 45602138 A G GPALPP1 Silent p.%3D 0.09 TCGA-VR-A8EW-01 13 45602196 45602196 A G GPALPP1 Intron 0.11 TCGA-VR-A8EW-01 13 52549268 52549268 C T ATP7B Missense_Mutation p.E30K 0.12 tolerated_low_confidence(0.11) benign(0.008) TCGA-VR-A8EW-01 13 58302459 58302459 T G PCDH17 3'UTR 0.50 TCGA-VR-A8EW-01 14 102676536 102676536 G T WDR20 3'Flank 0.51 TCGA-VR-A8EW-01 14 106208445 106208445 T C IGHG1 Missense_Mutation p.E152G 0.10 deleterious(0.01) possibly_damaging(0.641) TCGA-VR-A8EW-01 14 21859177 21859177 T C CHD8 Missense_Mutation p.N2371D 0.05 deleterious(0.03) benign(0.007) TCGA-VR-A8EW-01 14 24845836 24845836 C T NFATC4 Missense_Mutation p.S861F 0.14 deleterious_low_confidence(0.01) benign(0.122) TCGA-VR-A8EW-01 14 33243079 33243081 AAG - AKAP6 In_Frame_Del p.K1191del 0.10 TCGA-VR-A8EW-01 14 35783624 35783624 G A PSMA6 Missense_Mutation p.E216K 0.12 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EW-01 14 51561511 51561511 G T TRIM9 Missense_Mutation p.S49R 0.62 tolerated(0.05) benign(0.139) TCGA-VR-A8EW-01 14 56078803 56078803 A G KTN1 Missense_Mutation p.I13V 0.06 tolerated(0.45) benign(0.075) TCGA-VR-A8EW-01 14 64678706 64678706 G C SYNE2 Missense_Mutation p.E6251Q 0.07 probably_damaging(0.999) TCGA-VR-A8EW-01 15 25961902 25961902 G A ATP10A Missense_Mutation p.T584M 0.15 deleterious(0) probably_damaging(0.93) TCGA-VR-A8EW-01 15 34634302 34634302 T A NOP10 Missense_Mutation p.D21V 0.12 tolerated(0.09) possibly_damaging(0.529) TCGA-VR-A8EW-01 15 34634303 34634303 C A NOP10 Missense_Mutation p.D21Y 0.12 deleterious(0.03) probably_damaging(0.917) TCGA-VR-A8EW-01 15 38852065 38852065 T A RASGRP1 Silent p.G59G 0.36 TCGA-VR-A8EW-01 15 42058816 42058816 G A MGA Missense_Mutation p.E2846K 0.15 deleterious(0) possibly_damaging(0.899) TCGA-VR-A8EW-01 15 51260514 51260514 G C AP4E1 Missense_Mutation p.G636R 0.32 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EW-01 15 64010784 64010784 G A HERC1 Missense_Mutation p.R1323W 0.18 possibly_damaging(0.8) TCGA-VR-A8EW-01 15 78730581 78730582 - T IREB2 5'UTR 0.30 TCGA-VR-A8EW-01 15 91489925 91489925 C T UNC45A Silent p.D427D 0.42 TCGA-VR-A8EW-01 16 1716165 1716165 G A CRAMP1L Silent p.T948T 0.15 TCGA-VR-A8EW-01 16 1994875 1994875 A G RPL3L Missense_Mutation p.L396P 0.06 deleterious(0.04) benign(0.049) TCGA-VR-A8EW-01 17 30771555 30771555 C T PSMD11 Missense_Mutation p.A5V 0.09 tolerated(0.24) benign(0.087) TCGA-VR-A8EW-01 17 31087624 31087624 A - MYO1D Frame_Shift_Del p.C353Vfs*64 0.11 TCGA-VR-A8EW-01 17 39521427 39521427 C A KRT33B Silent p.L292L 0.33 TCGA-VR-A8EW-01 17 44632542 44632542 G A LRRC37A2 Nonsense_Mutation p.W1628* 0.29 TCGA-VR-A8EW-01 17 46019112 46019112 A G PNPO Missense_Mutation p.H24R 0.53 tolerated_low_confidence(0.33) benign(0) TCGA-VR-A8EW-01 17 48829423 48829424 - T LUC7L3 3'UTR 0.25 TCGA-VR-A8EW-01 17 53038554 53038554 A G TOM1L1 Intron 0.17 TCGA-VR-A8EW-01 17 61564065 61564065 G A ACE Missense_Mutation p.E736K 0.42 tolerated(0.5) possibly_damaging(0.594) TCGA-VR-A8EW-01 17 64800691 64800691 G A PRKCA 3'UTR 0.16 TCGA-VR-A8EW-01 17 7578556 7578556 T C TP53 Splice_Site p.X126_splice 0.62 TCGA-VR-A8EW-01 17 7748330 7748382 GGAGGCCGGGTAAGCGGCCGCTGCGTTTTGGGTCGGCCCAGTGGCTCCGGACT - KDM6B Splice_Site 0.13 TCGA-VR-A8EW-01 18 10760966 10760966 T C PIEZO2 Silent p.G1106G 0.10 TCGA-VR-A8EW-01 18 12802116 12802116 G C PTPN2 Missense_Mutation p.S298C 0.09 tolerated(0.14) benign(0) TCGA-VR-A8EW-01 18 55371857 55371857 A G ATP8B1 Missense_Mutation p.I108T 0.12 deleterious(0) benign(0.07) TCGA-VR-A8EW-01 19 11943541 11943541 C T ZNF440 Missense_Mutation p.A517V 0.07 tolerated(0.23) benign(0.001) TCGA-VR-A8EW-01 19 12856259 12856259 C T ASNA1 Silent p.S126S 0.36 TCGA-VR-A8EW-01 19 20728081 20728081 C G ZNF737 Missense_Mutation p.E310Q 0.18 deleterious(0.01) possibly_damaging(0.874) TCGA-VR-A8EW-01 19 3595700 3595700 A G TBXA2R Intron 0.47 TCGA-VR-A8EW-01 19 42880227 42880227 A T MEGF8 Missense_Mutation p.Y2546F 0.19 tolerated(0.08) possibly_damaging(0.789) TCGA-VR-A8EW-01 19 43697453 43697453 T C PSG4 3'UTR 0.17 TCGA-VR-A8EW-01 19 46522790 46522790 A G PGLYRP1 Missense_Mutation p.Y135H 0.35 deleterious(0) probably_damaging(0.995) TCGA-VR-A8EW-01 19 49340484 49340484 A C PLEKHA4 3'UTR 0.44 TCGA-VR-A8EW-01 19 52195962 52195962 C T SPACA6P-AS RNA 0.41 TCGA-VR-A8EW-01 19 7830858 7830858 G T CLEC4M Missense_Mutation p.Q183H 0.30 tolerated(0.12) unknown(0) TCGA-VR-A8EW-01 1 144816640 144816640 C G NBPF9 Missense_Mutation p.S257C 0.08 deleterious(0.01) probably_damaging(0.992) TCGA-VR-A8EW-01 1 161024465 161024465 G A ARHGAP30 Missense_Mutation p.R126C 0.17 deleterious(0) probably_damaging(1) TCGA-VR-A8EW-01 1 161518363 161518363 T G FCGR3A Missense_Mutation p.N92T 0.08 tolerated(0.08) benign(0.06) TCGA-VR-A8EW-01 1 161595991 161595991 C G FCGR3B Missense_Mutation p.G210A 0.08 tolerated(0.1) possibly_damaging(0.903) TCGA-VR-A8EW-01 1 166592888 166592888 G T FMO9P RNA 0.31 TCGA-VR-A8EW-01 1 174606588 174606588 G T RABGAP1L Nonsense_Mutation p.G596* 0.30 TCGA-VR-A8EW-01 1 174606589 174606589 G T RABGAP1L Missense_Mutation p.G596V 0.29 deleterious(0) probably_damaging(0.984) TCGA-VR-A8EW-01 1 178780524 178780524 T C RALGPS2 Silent p.Y124Y 0.18 TCGA-VR-A8EW-01 1 178848093 178848093 G C RALGPS2 Missense_Mutation p.E268Q 0.08 deleterious(0.03) benign(0.308) TCGA-VR-A8EW-01 1 178848102 178848102 A C RALGPS2 Missense_Mutation p.K271Q 0.07 deleterious(0) benign(0.034) TCGA-VR-A8EW-01 1 19478158 19478158 C T UBR4 Missense_Mutation p.D2398N 0.12 probably_damaging(0.94) TCGA-VR-A8EW-01 1 209956409 209956409 C T C1orf74 Missense_Mutation p.D191N 0.21 tolerated(0.64) benign(0.004) TCGA-VR-A8EW-01 1 216595333 216595333 G A USH2A Silent p.L116L 0.18 TCGA-VR-A8EW-01 1 2290084 2290084 G T MORN1 Silent p.V272V 0.52 TCGA-VR-A8EW-01 1 230417319 230417319 C T GALNT2 3'UTR 0.70 TCGA-VR-A8EW-01 1 2330933 2330933 C T RER1 Missense_Mutation p.P89L 0.11 deleterious(0.02) probably_damaging(1) TCGA-VR-A8EW-01 1 248112321 248112321 C A OR2L8 Silent p.L54L 0.10 TCGA-VR-A8EW-01 1 32154674 32154674 T A COL16A1 Missense_Mutation p.I545F 0.18 unknown(0) TCGA-VR-A8EW-01 1 36602741 36602741 G A TRAPPC3 3'UTR 0.16 TCGA-VR-A8EW-01 1 52798576 52798576 A C ZFYVE9 Missense_Mutation p.N1192T 0.14 deleterious(0.04) benign(0.392) TCGA-VR-A8EW-01 1 99774081 99774081 C A LPPR4 3'UTR 0.11 TCGA-VR-A8EW-01 20 10619018 10619018 T C JAG1 3'UTR 0.14 TCGA-VR-A8EW-01 20 2465211 2465211 G A ZNF343 Silent p.F132F 0.09 TCGA-VR-A8EW-01 20 35864999 35864999 G T RPN2 Missense_Mutation p.M590I 0.32 tolerated(0.08) possibly_damaging(0.588) TCGA-VR-A8EW-01 20 41100980 41100980 C T PTPRT Missense_Mutation p.R459Q 0.41 tolerated(0.32) benign(0.002) TCGA-VR-A8EW-01 20 55904959 55904959 C T SPO11 Silent p.F12F 0.11 TCGA-VR-A8EW-01 21 31986206 31986206 G A KRTAP6-1 Silent p.Y6Y 0.18 TCGA-VR-A8EW-01 21 35477900 35477900 G T SLC5A3 3'UTR 0.25 TCGA-VR-A8EW-01 22 26866727 26866727 C T HPS4 Missense_Mutation p.R185H 0.08 tolerated(0.05) possibly_damaging(0.809) TCGA-VR-A8EW-01 2 128900707 128900707 G A UGGT1 Missense_Mutation p.E587K 0.23 tolerated(0.17) benign(0.003) TCGA-VR-A8EW-01 2 160114319 160114320 - T WDSUB1 Frame_Shift_Ins p.M301Nfs*11 0.36 TCGA-VR-A8EW-01 2 165811955 165811955 A T SLC38A11 5'UTR 0.31 TCGA-VR-A8EW-01 2 196799411 196799411 T C DNAH7 Silent p.V1125V 0.19 TCGA-VR-A8EW-01 2 20450658 20450658 T A PUM2 3'UTR 0.29 TCGA-VR-A8EW-01 2 217123346 217123346 G T MARCH4 3'UTR 0.26 TCGA-VR-A8EW-01 2 225710304 225710304 A G DOCK10 Missense_Mutation p.F764S 0.07 deleterious(0) probably_damaging(0.925) TCGA-VR-A8EW-01 2 231266421 231266421 G C SP140L Missense_Mutation p.D515H 0.11 deleterious(0) probably_damaging(0.991) TCGA-VR-A8EW-01 2 238242105 238242105 G A COL6A3 Missense_Mutation p.L3106F 0.12 unknown(0) TCGA-VR-A8EW-01 2 80808922 80808922 T A CTNNA2 Missense_Mutation p.L662H 0.13 tolerated(0.06) probably_damaging(0.914) TCGA-VR-A8EW-01 2 85661489 85661489 G A SH2D6 5'Flank 0.12 TCGA-VR-A8EW-01 3 101283942 101283942 G C TRMT10C Missense_Mutation p.R106T 0.05 deleterious(0) benign(0.119) TCGA-VR-A8EW-01 3 105421182 105421182 C G CBLB Missense_Mutation p.S572T 0.06 tolerated_low_confidence(0.19) benign(0.011) TCGA-VR-A8EW-01 3 121100248 121100248 G A STXBP5L Missense_Mutation p.R843Q 0.30 deleterious(0.01) probably_damaging(0.981) TCGA-VR-A8EW-01 3 129218827 129218827 C A IFT122 Missense_Mutation p.P815H 0.25 tolerated(0.11) possibly_damaging(0.723) TCGA-VR-A8EW-01 3 150780576 150780576 G T CLRN1-AS1 Intron 0.24 TCGA-VR-A8EW-01 3 152181215 152181215 A G MBNL1 3'UTR 0.22 TCGA-VR-A8EW-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.17 deleterious(0.02) probably_damaging(0.959) TCGA-VR-A8EW-01 3 179052373 179052373 A G ZNF639 3'UTR 0.20 TCGA-VR-A8EW-01 3 180320003 180320003 C A TTC14 5'UTR 0.06 TCGA-VR-A8EW-01 3 190999931 190999931 C G UTS2B Missense_Mutation p.L16F 0.05 tolerated(0.13) benign(0.151) TCGA-VR-A8EW-01 3 197765629 197765629 G A LMLN 3'UTR 0.40 TCGA-VR-A8EW-01 3 88039924 88039924 C A HTR1F Missense_Mutation p.Q9K 0.17 tolerated(0.91) benign(0.001) TCGA-VR-A8EW-01 4 103236927 103236927 T C SLC39A8 Missense_Mutation p.S94G 0.54 tolerated(0.56) benign(0.002) TCGA-VR-A8EW-01 4 121966862 121966862 G T NDNF Nonsense_Mutation p.S44* 0.49 TCGA-VR-A8EW-01 4 15068289 15068289 G C CPEB2 3'UTR 0.17 TCGA-VR-A8EW-01 4 154260058 154260058 C T TRIM2 3'UTR 0.14 TCGA-VR-A8EW-01 4 165879878 165879878 C G FAM218A 3'UTR 0.07 TCGA-VR-A8EW-01 4 170912904 170912904 C G MFAP3L Missense_Mutation p.E285D 0.12 tolerated(0.48) benign(0.005) TCGA-VR-A8EW-01 4 17634044 17634044 A G FAM184B 3'UTR 0.44 TCGA-VR-A8EW-01 4 183815663 183815663 C T DCTD Missense_Mutation p.A125T 0.19 tolerated(0.15) possibly_damaging(0.64) TCGA-VR-A8EW-01 4 52917943 52917943 C T SPATA18 Silent p.L25L 0.28 TCGA-VR-A8EW-01 4 71554831 71554831 G A UTP3 Missense_Mutation p.R146Q 0.24 tolerated(0.27) benign(0.098) TCGA-VR-A8EW-01 4 71554832 71554832 A T UTP3 Silent p.R146R 0.24 TCGA-VR-A8EW-01 4 88029349 88029349 A G AFF1 Missense_Mutation p.H472R 0.59 deleterious(0.01) unknown(0) TCGA-VR-A8EW-01 4 94128579 94128579 T C GRID2 Missense_Mutation p.F254L 0.09 tolerated(0.6) benign(0.365) TCGA-VR-A8EW-01 4 96762268 96762268 G T PDHA2 Missense_Mutation p.V323L 0.25 tolerated(1) benign(0.008) TCGA-VR-A8EW-01 5 139946715 139946715 A G SLC35A4 5'UTR 0.33 TCGA-VR-A8EW-01 5 140223323 140223323 C A PCDHA8 Intron 0.40 TCGA-VR-A8EW-01 5 161582271 161582271 T C GABRG2 3'UTR 0.53 TCGA-VR-A8EW-01 5 173384140 173384142 AAC - CPEB4 3'UTR 0.17 TCGA-VR-A8EW-01 5 56152526 56152526 G A MAP3K1 Missense_Mutation p.M194I 0.26 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-VR-A8EW-01 6 157405821 157405821 T C ARID1B Missense_Mutation p.L688P 0.06 probably_damaging(1) TCGA-VR-A8EW-01 6 36936736 36936736 T A MTCH1 Silent p.R354R 0.19 TCGA-VR-A8EW-01 6 41168696 41168696 G A TREML2 Silent p.V17V 0.13 TCGA-VR-A8EW-01 6 43230870 43230870 G C TTBK1 Missense_Mutation p.E590Q 0.27 possibly_damaging(0.696) TCGA-VR-A8EW-01 6 71289168 71289168 G A C6orf57 Missense_Mutation p.G39E 0.34 tolerated(0.53) benign(0.006) TCGA-VR-A8EW-01 7 107638866 107638866 G A LAMB1 Silent p.L95L 0.44 TCGA-VR-A8EW-01 7 123671981 123671981 G T TMEM229A Missense_Mutation p.F359L 0.40 tolerated(0.28) probably_damaging(0.979) TCGA-VR-A8EW-01 7 1520578 1520578 C T INTS1 Intron 0.29 TCGA-VR-A8EW-01 7 18688191 18688191 G A HDAC9 Missense_Mutation p.R451Q 0.13 deleterious(0) probably_damaging(0.991) TCGA-VR-A8EW-01 7 74193766 74193766 C A NCF1 Missense_Mutation p.N131K 0.29 tolerated(0.45) benign(0.037) TCGA-VR-A8EW-01 7 75959019 75959019 C T YWHAG Missense_Mutation p.E207K 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.817) TCGA-VR-A8EW-01 7 83640589 83640589 G C SEMA3A Missense_Mutation p.L279V 0.10 deleterious(0.01) probably_damaging(0.923) TCGA-VR-A8EW-01 7 97939821 97939821 C A BAIAP2L1 Missense_Mutation p.L297F 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-VR-A8EW-01 8 101196196 101196196 G C SPAG1 Missense_Mutation p.E167D 0.08 deleterious(0.03) probably_damaging(0.948) TCGA-VR-A8EW-01 8 103663830 103663830 G A KLF10 Nonsense_Mutation p.Q244* 0.43 TCGA-VR-A8EW-01 8 105261014 105261014 C T RIMS2 Missense_Mutation p.R1188C 0.14 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-VR-A8EW-01 8 28196744 28196744 T G PNOC Missense_Mutation p.F105C 0.15 deleterious(0.05) possibly_damaging(0.659) TCGA-VR-A8EW-01 8 64100283 64100285 GAG - YTHDF3 In_Frame_Del p.E573del 0.49 TCGA-VR-A8EW-01 8 70571279 70571279 G C SULF1 3'UTR 0.34 TCGA-VR-A8EW-01 8 77767878 77767878 G A ZFHX4 Silent p.P2907P 0.40 TCGA-VR-A8EW-01 8 86244762 86244762 T A CA1 Missense_Mutation p.K157M 0.15 tolerated(0.07) benign(0.404) TCGA-VR-A8EW-01 9 120476760 120476760 T G TLR4 Missense_Mutation p.L785R 0.22 deleterious(0) probably_damaging(1) TCGA-VR-A8EW-01 9 125582106 125582106 T A PDCL 3'UTR 0.13 TCGA-VR-A8EW-01 9 38396393 38396393 C G ALDH1B1 Silent p.L216L 0.20 TCGA-VR-A8EW-01 9 5968230 5968248 CTGCTCTAATAGAATATCC - KIAA2026 Frame_Shift_Del p.R661Sfs*11 0.31 TCGA-VR-A8EW-01 9 74667123 74667123 C A C9orf57 3'UTR 0.37 TCGA-VR-A8EW-01 9 84607398 84607398 C A SPATA31D1 Silent p.S671S 0.11 TCGA-VR-A8EW-01 9 98239986 98239986 T A PTCH1 Splice_Site p.X450_splice 0.86 TCGA-VR-A8EW-01 X 101912226 101912226 C G GPRASP1 Missense_Mutation p.L1129V 0.86 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EW-01 X 107976076 107976076 C A IRS4 Missense_Mutation p.A1167S 0.77 deleterious_low_confidence(0.01) unknown(0) TCGA-VR-A8EW-01 X 155252079 155252079 T G WASH6P RNA 0.22 TCGA-VR-A8EW-01 X 34648476 34648476 G A TMEM47 Missense_Mutation p.A167V 0.66 deleterious(0.01) probably_damaging(0.992) TCGA-VR-A8EW-01 X 49689825 49689825 C A CLCN5 5'UTR 0.08 TCGA-VR-A8EW-01 X 54040940 54040940 T C PHF8 Missense_Mutation p.N254S 0.15 deleterious(0) possibly_damaging(0.688) TCGA-VR-A8EX-01 10 108335566 108335566 A T SORCS1 3'Flank 0.14 TCGA-VR-A8EX-01 10 119013947 119013947 T A SLC18A2 Missense_Mutation p.D213E 0.22 tolerated(0.07) benign(0.297) TCGA-VR-A8EX-01 10 27537518 27537518 C T RP11-85G18.6 Intron 0.15 TCGA-VR-A8EX-01 10 31809133 31809133 G C ZEB1 Missense_Mutation p.K291N 0.08 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EX-01 10 47946902 47946902 G C FAM21B Missense_Mutation p.D1180H 0.23 deleterious(0) probably_damaging(0.979) TCGA-VR-A8EX-01 10 61413642 61413642 A G SLC16A9 Missense_Mutation p.I381T 0.12 tolerated(1) benign(0.001) TCGA-VR-A8EX-01 10 93624433 93624433 T G TNKS2 3'UTR 0.12 TCGA-VR-A8EX-01 10 96109877 96109877 G C NOC3L Nonsense_Mutation p.S374* 0.12 TCGA-VR-A8EX-01 11 108005929 108005930 - CT ACAT1 Frame_Shift_Ins p.I133Sfs*3 0.22 TCGA-VR-A8EX-01 11 108032507 108032507 A G NPAT Silent p.N1102N 0.10 TCGA-VR-A8EX-01 11 11398890 11398890 C T GALNT18 Silent p.R272R 0.11 TCGA-VR-A8EX-01 11 12257748 12257748 G A MICAL2 Missense_Mutation p.D674N 0.12 tolerated(0.05) benign(0.24) TCGA-VR-A8EX-01 11 30902833 30902833 C G DCDC1 Missense_Mutation p.R1699P 0.13 deleterious(0) possibly_damaging(0.655) TCGA-VR-A8EX-01 11 34107731 34107731 A G CAPRIN1 Missense_Mutation p.M363V 0.32 deleterious(0) benign(0.113) TCGA-VR-A8EX-01 11 63439335 63439335 G A ATL3 5'Flank 0.07 TCGA-VR-A8EX-01 11 64825853 64825853 G A NAALADL1 Silent p.T47T 0.08 TCGA-VR-A8EX-01 11 89882218 89882218 G C NAALAD2 Missense_Mutation p.E142D 0.09 tolerated(0.11) benign(0.189) TCGA-VR-A8EX-01 12 100042091 100042091 G C FAM71C Missense_Mutation p.E47Q 0.09 deleterious(0) probably_damaging(0.996) TCGA-VR-A8EX-01 12 110973069 110973069 G A PPTC7 3'UTR 0.16 TCGA-VR-A8EX-01 12 121435420 121435420 A G HNF1A Missense_Mutation p.T485A 0.19 tolerated(1) benign(0) TCGA-VR-A8EX-01 12 2721273 2721273 G T CACNA1C Intron 0.12 TCGA-VR-A8EX-01 12 32145344 32145344 T A KIAA1551 Missense_Mutation p.F1707I 0.07 tolerated(0.22) benign(0.11) TCGA-VR-A8EX-01 12 55886973 55886973 G A OR6C68 Missense_Mutation p.G271D 0.18 tolerated_low_confidence(0.05) benign(0.344) TCGA-VR-A8EX-01 12 65224154 65224154 T C TBC1D30 Intron 0.16 TCGA-VR-A8EX-01 12 68553407 68553407 G T IFNG 5'UTR 0.20 TCGA-VR-A8EX-01 12 922899 922899 A G WNK1 Missense_Mutation p.Y284C 0.07 deleterious(0) unknown(0) TCGA-VR-A8EX-01 12 96350673 96350673 G C AMDHD1 Missense_Mutation p.E174Q 0.14 tolerated(0.07) benign(0.056) TCGA-VR-A8EX-01 13 109562480 109562480 A C MYO16 Missense_Mutation p.N614T 0.06 tolerated(0.09) benign(0.41) TCGA-VR-A8EX-01 13 21721403 21721403 G C SAP18 Missense_Mutation p.Q147H 0.28 deleterious(0.03) probably_damaging(0.977) TCGA-VR-A8EX-01 13 41766370 41766370 C T KBTBD7 Missense_Mutation p.R675Q 0.10 tolerated_low_confidence(0.56) benign(0.001) TCGA-VR-A8EX-01 14 105716550 105716550 C T BTBD6 Silent p.L333L 0.36 TCGA-VR-A8EX-01 14 24583968 24583968 C G NRL 5'UTR 0.06 TCGA-VR-A8EX-01 14 51192707 51192707 C A NIN Missense_Mutation p.R2052S 0.25 deleterious(0.04) benign(0.008) TCGA-VR-A8EX-01 14 60483421 60483421 G C LRRC9 Missense_Mutation p.R1077T 0.14 deleterious(0) benign(0.219) TCGA-VR-A8EX-01 14 60712739 60712739 G A PPM1A Missense_Mutation p.M58I 0.14 deleterious_low_confidence(0.02) benign(0) TCGA-VR-A8EX-01 14 66954918 66954918 G A LINC00238 RNA 0.23 TCGA-VR-A8EX-01 14 70989758 70989759 - A ADAM20 Frame_Shift_Ins p.P623Sfs*16 0.42 TCGA-VR-A8EX-01 14 71196964 71196964 A G MAP3K9 3'UTR 0.22 TCGA-VR-A8EX-01 14 90725515 90725515 G C PSMC1 Missense_Mutation p.Q5H 0.06 tolerated_low_confidence(0.2) possibly_damaging(0.781) TCGA-VR-A8EX-01 15 43819502 43819502 C A MAP1A Missense_Mutation p.T1944K 0.11 benign(0) TCGA-VR-A8EX-01 15 69677148 69677148 C T PAQR5 Silent p.F104F 0.12 TCGA-VR-A8EX-01 15 75090969 75090969 C A CSK Missense_Mutation p.S10Y 0.13 deleterious(0) possibly_damaging(0.483) TCGA-VR-A8EX-01 15 77242113 77242113 G C RCN2 3'UTR 0.06 TCGA-VR-A8EX-01 15 77242231 77242231 G A RCN2 3'UTR 0.10 TCGA-VR-A8EX-01 15 89859688 89859688 T C FANCI Nonstop_Mutation p.*1329Qext*6 0.17 TCGA-VR-A8EX-01 16 23592379 23592380 - A NDUFAB1 3'Flank 0.11 TCGA-VR-A8EX-01 16 30017262 30017262 C T DOC2A 3'UTR 0.36 TCGA-VR-A8EX-01 16 4921228 4921228 T A UBN1 Silent p.A544A 0.09 TCGA-VR-A8EX-01 16 4924401 4924401 G C UBN1 Missense_Mutation p.D664H 0.09 deleterious(0) possibly_damaging(0.866) TCGA-VR-A8EX-01 16 69352763 69352763 C T VPS4A Silent p.N127N 0.20 TCGA-VR-A8EX-01 16 71888328 71888328 A G ATXN1L 3'UTR 0.15 TCGA-VR-A8EX-01 17 1554764 1554764 C A PRPF8 Missense_Mutation p.K2198N 0.18 tolerated(0.08) benign(0.016) TCGA-VR-A8EX-01 17 26087701 26087701 G C NOS2 Missense_Mutation p.I986M 0.14 deleterious(0) probably_damaging(1) TCGA-VR-A8EX-01 17 27051820 27051820 A T TLCD1 Missense_Mutation p.L151H 0.30 deleterious(0) probably_damaging(1) TCGA-VR-A8EX-01 17 34199418 34199418 C T CCL5 Nonsense_Mutation p.W80* 0.11 TCGA-VR-A8EX-01 17 40127302 40127303 CT - CNP 3'UTR 0.14 TCGA-VR-A8EX-01 17 42160016 42160016 T A HDAC5 Silent p.V849V 0.47 TCGA-VR-A8EX-01 17 67092434 67092434 T C ABCA6 Missense_Mutation p.I1119V 0.42 tolerated(0.23) benign(0.026) TCGA-VR-A8EX-01 17 73824077 73824077 G A UNC13D Missense_Mutation p.A1081V 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.83) TCGA-VR-A8EX-01 17 73841877 73841877 C A WBP2 3'UTR 0.30 TCGA-VR-A8EX-01 17 7574000 7574000 C A TP53 Nonsense_Mutation p.E343* 0.47 TCGA-VR-A8EX-01 17 80789439 80789439 A - ZNF750 Frame_Shift_Del p.S298Lfs*68 0.22 TCGA-VR-A8EX-01 18 29797884 29797884 C G MEP1B Missense_Mutation p.R683G 0.07 deleterious(0.01) benign(0.01) TCGA-VR-A8EX-01 18 56819910 56819910 C T SEC11C Missense_Mutation p.H114Y 0.06 deleterious(0.04) benign(0.33) TCGA-VR-A8EX-01 18 65180960 65180960 G A DSEL Missense_Mutation p.R306C 0.23 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EX-01 19 12501412 12501412 G C ZNF799 Silent p.L600L 0.06 TCGA-VR-A8EX-01 19 12738587 12738587 G T ZNF791 Nonsense_Mutation p.E82* 0.12 TCGA-VR-A8EX-01 19 15164553 15164553 G C CASP14 Missense_Mutation p.E63Q 0.31 deleterious(0.01) probably_damaging(0.938) TCGA-VR-A8EX-01 19 20728406 20728406 G C ZNF737 Missense_Mutation p.F201L 0.08 deleterious(0) benign(0.156) TCGA-VR-A8EX-01 19 2878078 2878078 G A ZNF556 Silent p.T374T 0.09 TCGA-VR-A8EX-01 19 36333075 36333075 C T NPHS1 Missense_Mutation p.V872I 0.26 tolerated(0.29) benign(0.014) TCGA-VR-A8EX-01 19 37241026 37241026 C T ZNF850 Missense_Mutation p.E306K 0.28 deleterious(0.05) benign(0.21) TCGA-VR-A8EX-01 19 39075637 39075637 G A RYR1 Missense_Mutation p.E4901K 0.08 unknown(0) TCGA-VR-A8EX-01 19 49519433 49519433 G C LHB Silent p.L106L 0.07 TCGA-VR-A8EX-01 19 54188332 54188332 G A MIR515-2 RNA 0.19 TCGA-VR-A8EX-01 19 58099931 58099931 G A ZIK1 Missense_Mutation p.A33T 0.30 deleterious(0) benign(0.158) TCGA-VR-A8EX-01 19 757214 757214 G A MISP Missense_Mutation p.E90K 0.09 tolerated(0.15) possibly_damaging(0.801) TCGA-VR-A8EX-01 19 9064268 9064268 C T MUC16 Silent p.A7726A 0.15 TCGA-VR-A8EX-01 1 101186144 101186144 G C VCAM1 Missense_Mutation p.W59C 0.08 deleterious(0) probably_damaging(1) TCGA-VR-A8EX-01 1 113235484 113235484 A G MOV10 Missense_Mutation p.Y358C 0.19 deleterious(0.01) probably_damaging(0.938) TCGA-VR-A8EX-01 1 152191248 152191248 G T HRNR Missense_Mutation p.H953N 0.23 unknown(0) TCGA-VR-A8EX-01 1 152280935 152280935 C T FLG Missense_Mutation p.G2143R 0.13 probably_damaging(0.953) TCGA-VR-A8EX-01 1 158435698 158435698 C A OR10K1 Missense_Mutation p.A116E 0.14 deleterious(0) probably_damaging(0.934) TCGA-VR-A8EX-01 1 158736112 158736112 C T OR6N1 Missense_Mutation p.D121N 0.27 deleterious(0) probably_damaging(1) TCGA-VR-A8EX-01 1 161512778 161512778 C G FCGR3A 3'UTR 0.26 TCGA-VR-A8EX-01 1 1687745 1687745 G C NADK Missense_Mutation p.I324M 0.13 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EX-01 1 172634774 172634774 C G FASLG Nonsense_Mutation p.S155* 0.17 TCGA-VR-A8EX-01 1 178855196 178855196 C T RALGPS2 Missense_Mutation p.P378L 0.27 tolerated(0.16) benign(0.045) TCGA-VR-A8EX-01 1 186099708 186099708 A C HMCN1 Missense_Mutation p.N4370T 0.08 possibly_damaging(0.817) TCGA-VR-A8EX-01 1 192129548 192129548 G A RGS18 Missense_Mutation p.D88N 0.11 tolerated(0.08) possibly_damaging(0.596) TCGA-VR-A8EX-01 1 204987007 204987007 C T NFASC 3'UTR 0.10 TCGA-VR-A8EX-01 1 207527382 207527382 G C CD55 Intron 0.25 TCGA-VR-A8EX-01 1 245772708 245772708 G A KIF26B Missense_Mutation p.V598M 0.07 deleterious(0) unknown(0) TCGA-VR-A8EX-01 1 247769531 247769531 C G OR2G3 Missense_Mutation p.S215C 0.12 deleterious(0) benign(0.041) TCGA-VR-A8EX-01 1 248112840 248112840 G A OR2L8 Missense_Mutation p.M227I 0.09 deleterious(0.05) benign(0.289) TCGA-VR-A8EX-01 1 42620505 42620505 C T GUCA2B Missense_Mutation p.S82L 0.21 deleterious(0.04) benign(0.232) TCGA-VR-A8EX-01 1 48878823 48878823 T C SPATA6 Missense_Mutation p.Y80C 0.05 tolerated(0.13) benign(0.001) TCGA-VR-A8EX-01 1 53544114 53544114 T A PODN Missense_Mutation p.L359Q 0.11 deleterious(0) probably_damaging(0.987) TCGA-VR-A8EX-01 1 6521693 6521693 C T TNFRSF25 Missense_Mutation p.R361H 0.26 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EX-01 1 70225961 70225961 C A LRRC7 Nonsense_Mutation p.S25* 0.23 TCGA-VR-A8EX-01 1 8555218 8555218 T A RERE Missense_Mutation p.M337L 0.16 possibly_damaging(0.67) TCGA-VR-A8EX-01 1 85725158 85725158 C T C1orf52 Silent p.E53E 0.14 TCGA-VR-A8EX-01 20 1187643 1187643 G C C20orf202 Missense_Mutation p.R89T 0.11 deleterious(0) probably_damaging(0.997) TCGA-VR-A8EX-01 20 23066586 23066586 G A CD93 Missense_Mutation p.R82W 0.24 deleterious(0.02) possibly_damaging(0.72) TCGA-VR-A8EX-01 20 33862200 33862200 C A MMP24 Silent p.R576R 0.22 TCGA-VR-A8EX-01 20 33868521 33868521 G A EIF6 Missense_Mutation p.S102L 0.11 deleterious(0) probably_damaging(0.992) TCGA-VR-A8EX-01 20 37146211 37146211 C T RALGAPB Nonsense_Mutation p.Q372* 0.07 TCGA-VR-A8EX-01 20 42935620 42935620 C T FITM2 Missense_Mutation p.G145D 0.09 tolerated(0.08) probably_damaging(0.995) TCGA-VR-A8EX-01 20 44994974 44994974 A T ELMO2 3'UTR 0.26 TCGA-VR-A8EX-01 20 49576280 49576280 G T MOCS3 Missense_Mutation p.G301W 0.18 deleterious(0) probably_damaging(1) TCGA-VR-A8EX-01 22 21834224 21834224 C A PI4KAP2 RNA 0.23 TCGA-VR-A8EX-01 22 38020994 38020994 A G GGA1 Missense_Mutation p.N284S 0.24 tolerated(0.32) probably_damaging(0.983) TCGA-VR-A8EX-01 2 100019466 100019466 C G REV1 Missense_Mutation p.L1090F 0.11 tolerated(0.05) benign(0.033) TCGA-VR-A8EX-01 2 128477915 128477915 C G WDR33 Missense_Mutation p.E562Q 0.15 deleterious_low_confidence(0) unknown(0) TCGA-VR-A8EX-01 2 135957809 135957809 C G ZRANB3 3'UTR 0.12 TCGA-VR-A8EX-01 2 148685804 148685805 - GGG ACVR2A 3'UTR 0.35 TCGA-VR-A8EX-01 2 166897845 166897845 C T SCN1A Missense_Mutation p.D771N 0.13 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EX-01 2 207452097 207452097 C T ADAM23 Nonsense_Mutation p.Q596* 0.06 TCGA-VR-A8EX-01 2 218667583 218667583 T C TNS1 3'UTR 0.10 TCGA-VR-A8EX-01 2 225751206 225751206 C T DOCK10 Silent p.E153E 0.25 TCGA-VR-A8EX-01 2 228125795 228125795 C T COL4A3 Intron 0.12 TCGA-VR-A8EX-01 2 27255943 27255943 T A TMEM214 Silent p.P20P 0.05 TCGA-VR-A8EX-01 2 27439826 27439826 G A ATRAID 3'UTR 0.22 TCGA-VR-A8EX-01 2 31805773 31805773 C A SRD5A2 RNA 0.11 TCGA-VR-A8EX-01 2 85051238 85051238 G A TRABD2A Silent p.A342A 0.31 TCGA-VR-A8EX-01 2 89999560 89999560 C T IGKV2D-28 3'Flank 0.14 TCGA-VR-A8EX-01 2 97271233 97271233 T A KANSL3 Missense_Mutation p.E586V 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.529) TCGA-VR-A8EX-01 3 101312722 101312722 C G PCNP 3'UTR 0.24 TCGA-VR-A8EX-01 3 10312013 10312013 G A TATDN2 Missense_Mutation p.A383T 0.43 tolerated(0.42) benign(0.014) TCGA-VR-A8EX-01 3 109049625 109049625 C T DPPA4 Missense_Mutation p.R142Q 0.23 tolerated(0.36) benign(0.002) TCGA-VR-A8EX-01 3 113440608 113440608 C T NAA50 Silent p.%3D 0.14 TCGA-VR-A8EX-01 3 126224599 126224599 C T UROC1 Missense_Mutation p.S253N 0.09 deleterious(0) probably_damaging(0.982) TCGA-VR-A8EX-01 3 140265422 140265422 C T CLSTN2 Missense_Mutation p.R525C 0.17 deleterious(0) probably_damaging(0.985) TCGA-VR-A8EX-01 3 153935706 153935706 A T ARHGEF26 Missense_Mutation p.M632L 0.06 tolerated(0.15) benign(0.032) TCGA-VR-A8EX-01 3 183439839 183439839 C G YEATS2 Missense_Mutation p.S151C 0.17 deleterious(0.04) possibly_damaging(0.571) TCGA-VR-A8EX-01 3 3081620 3081620 G T CNTN4 Intron 0.41 TCGA-VR-A8EX-01 3 47958058 47958058 T C MAP4 Missense_Mutation p.Q420R 0.09 deleterious(0) benign(0.157) TCGA-VR-A8EX-01 3 54958911 54958911 C T LRTM1 Silent p.L113L 0.27 TCGA-VR-A8EX-01 3 57557144 57557144 G A ARF4 3'UTR 0.22 TCGA-VR-A8EX-01 4 10445192 10445192 T A ZNF518B Missense_Mutation p.R921W 0.36 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EX-01 4 106159255 106159255 A G TET2 Intron 0.29 TCGA-VR-A8EX-01 4 110605697 110605697 G A CCDC109B Nonsense_Mutation p.W237* 0.08 TCGA-VR-A8EX-01 4 129792508 129792508 A G JADE1 Splice_Site p.X541_splice 0.15 TCGA-VR-A8EX-01 4 155180876 155180876 C G DCHS2 Missense_Mutation p.D1749H 0.09 deleterious(0) probably_damaging(1) TCGA-VR-A8EX-01 4 26364087 26364087 A G RBPJ Intron 0.25 TCGA-VR-A8EX-01 4 30723525 30723525 C G PCDH7 Missense_Mutation p.L161V 0.13 tolerated(0.09) benign(0.302) TCGA-VR-A8EX-01 4 3136265 3136265 C T HTT Silent p.F877F 0.08 TCGA-VR-A8EX-01 4 41987000 41987000 G T DCAF4L1 3'UTR 0.13 TCGA-VR-A8EX-01 4 44704415 44704415 T C GNPDA2 3'UTR 0.17 TCGA-VR-A8EX-01 4 81188301 81188301 A C FGF5 Missense_Mutation p.K108T 0.07 tolerated(0.25) benign(0.446) TCGA-VR-A8EX-01 5 1079589 1079589 C G SLC12A7 Silent p.R440R 0.11 TCGA-VR-A8EX-01 5 131993940 131993940 C T IL13 Missense_Mutation p.T21M 0.17 tolerated(0.2) benign(0.003) TCGA-VR-A8EX-01 5 138725440 138725440 C G MZB1 Missense_Mutation p.D36H 0.07 deleterious(0.01) probably_damaging(0.91) TCGA-VR-A8EX-01 5 146773349 146773349 T C DPYSL3 3'UTR 0.09 TCGA-VR-A8EX-01 5 177420005 177420005 C T PROP1 Missense_Mutation p.R129H 0.08 deleterious(0) probably_damaging(0.997) TCGA-VR-A8EX-01 5 38338853 38338853 C T EGFLAM Silent p.S87S 0.30 TCGA-VR-A8EX-01 5 78376682 78376682 T C BHMT2 Missense_Mutation p.V144A 0.20 tolerated(0.25) possibly_damaging(0.89) TCGA-VR-A8EX-01 5 79030185 79030185 C G CMYA5 Nonsense_Mutation p.S1866* 0.08 TCGA-VR-A8EX-01 5 79031154 79031154 C G CMYA5 Missense_Mutation p.S2189W 0.20 probably_damaging(0.992) TCGA-VR-A8EX-01 6 121655463 121655463 C A TBC1D32 Missense_Mutation p.E38D 0.09 tolerated(0.19) possibly_damaging(0.73) TCGA-VR-A8EX-01 6 26412804 26412804 C T BTN3A1 Intron 0.29 TCGA-VR-A8EX-01 6 27860562 27860562 C T HIST1H2AM Silent p.E122E 0.14 TCGA-VR-A8EX-01 6 30656474 30656474 G T NRM Missense_Mutation p.H251Q 0.22 tolerated(0.8) benign(0.004) TCGA-VR-A8EX-01 6 32940401 32940402 AG - BRD2 5'UTR 0.30 TCGA-VR-A8EX-01 6 90438848 90438848 T A MDN1 Silent p.L1717L 0.17 TCGA-VR-A8EX-01 6 90573976 90573976 C G CASP8AP2 RNA 0.33 TCGA-VR-A8EX-01 7 11022380 11022380 C T PHF14 Missense_Mutation p.S165F 0.09 deleterious_low_confidence(0.03) unknown(0) TCGA-VR-A8EX-01 7 122774551 122774551 C G SLC13A1 Missense_Mutation p.G282A 0.21 tolerated(1) probably_damaging(0.999) TCGA-VR-A8EX-01 7 147183046 147183046 G A CNTNAP2 Missense_Mutation p.E564K 0.11 deleterious(0) probably_damaging(0.976) TCGA-VR-A8EX-01 7 19745033 19745033 T C TWISTNB Intron 0.14 TCGA-VR-A8EX-01 7 23768795 23768795 C G STK31 Missense_Mutation p.S137C 0.05 deleterious(0) probably_damaging(0.926) TCGA-VR-A8EX-01 7 28859157 28859157 A G CREB5 3'UTR 0.11 TCGA-VR-A8EX-01 7 50513641 50513641 G C FIGNL1 Missense_Mutation p.L449V 0.12 deleterious(0) probably_damaging(0.977) TCGA-VR-A8EX-01 7 64437400 64437400 G A ZNF117 3'UTR 0.16 TCGA-VR-A8EX-01 7 86468286 86468286 T C GRM3 Missense_Mutation p.W486R 0.17 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EX-01 7 98565243 98565243 C T TRRAP Silent p.Y2471Y 0.15 TCGA-VR-A8EX-01 7 99145817 99145817 C G FAM200A Missense_Mutation p.A72P 0.17 deleterious(0.01) probably_damaging(0.963) TCGA-VR-A8EX-01 7 99489970 99489970 T A TRIM4 Missense_Mutation p.E440V 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-VR-A8EX-01 8 110456047 110456047 C A PKHD1L1 Missense_Mutation p.S1569R 0.12 tolerated(0.18) benign(0.424) TCGA-VR-A8EX-01 8 145580145 145580145 C T FBXL6 Missense_Mutation p.R347Q 0.11 deleterious(0.04) benign(0.027) TCGA-VR-A8EX-01 9 108308773 108308773 C T FSD1L 3'UTR 0.09 TCGA-VR-A8EX-01 9 113170469 113170469 C T SVEP1 Missense_Mutation p.E2471K 0.09 probably_damaging(0.999) TCGA-VR-A8EX-01 9 130941328 130941328 C T CIZ1 Silent p.Q386Q 0.15 TCGA-VR-A8EX-01 9 131857575 131857575 G C CRAT 3'UTR 0.14 TCGA-VR-A8EX-01 9 133750256 133750256 G C ABL1 Missense_Mutation p.D382H 0.15 deleterious(0) probably_damaging(0.99) TCGA-VR-A8EX-01 9 4118563 4118563 C A GLIS3 Missense_Mutation p.L305F 0.27 deleterious(0) probably_damaging(0.997) TCGA-VR-A8EX-01 9 8317510 8317510 C T PTPRD 3'UTR 0.19 TCGA-VR-A8EX-01 9 86504111 86504111 G A KIF27 Nonsense_Mutation p.R623* 0.33 TCGA-VR-A8EX-01 X 125298882 125298882 C A DCAF12L2 Silent p.R342R 0.17 TCGA-VR-A8EX-01 X 140335751 140335751 C G SPANXC Missense_Mutation p.E65Q 0.09 tolerated(0.2) benign(0.006) TCGA-VR-A8EX-01 X 153944371 153944371 C T GAB3 Silent p.E102E 0.70 TCGA-VR-A8EX-01 X 47495781 47495781 G A ELK1 3'UTR 0.10 TCGA-VR-A8EY-01 10 102753223 102753224 - C C10orf2 Frame_Shift_Ins p.T673Hfs*23 0.18 TCGA-VR-A8EY-01 10 12206507 12206507 G T SEC61A2 3'UTR 0.44 TCGA-VR-A8EY-01 10 134895346 134895346 C A GPR123-AS1 3'Flank 0.40 TCGA-VR-A8EY-01 10 134942261 134942261 G A GPR123 Missense_Mutation p.R310H 0.50 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EY-01 10 49395321 49395321 C A FRMPD2 Missense_Mutation p.R727L 0.38 tolerated(0.54) benign(0.001) TCGA-VR-A8EY-01 10 51974561 51974561 C T ASAH2 Missense_Mutation p.R361H 0.34 tolerated(1) benign(0.001) TCGA-VR-A8EY-01 10 75566417 75566417 G C NDST2 Missense_Mutation p.L416V 0.36 tolerated(0.58) benign(0.004) TCGA-VR-A8EY-01 10 97604276 97604276 G T ENTPD1 Nonsense_Mutation p.E165* 0.28 TCGA-VR-A8EY-01 11 132286834 132286834 C A OPCML 3'UTR 0.29 TCGA-VR-A8EY-01 11 17650754 17650754 G A OTOG Missense_Mutation p.M2213I 0.47 benign(0.135) TCGA-VR-A8EY-01 11 18159894 18159894 T G MRGPRX3 3'UTR 0.20 TCGA-VR-A8EY-01 11 22363299 22363299 C T SLC17A6 Silent p.I104I 0.36 TCGA-VR-A8EY-01 11 65172410 65172410 A G FRMD8 Missense_Mutation p.S383G 0.25 tolerated(0.29) benign(0.003) TCGA-VR-A8EY-01 11 66010644 66010644 G A PACS1 Missense_Mutation p.D929N 0.46 deleterious(0) probably_damaging(0.955) TCGA-VR-A8EY-01 11 66103925 66103925 C A RIN1 5'UTR 0.31 TCGA-VR-A8EY-01 11 66190167 66190167 C T NPAS4 Silent p.F151F 0.46 TCGA-VR-A8EY-01 11 76979559 76979559 G T GDPD4 Missense_Mutation p.S217Y 0.61 deleterious(0) probably_damaging(0.99) TCGA-VR-A8EY-01 12 111785396 111785396 G A CUX2 Missense_Mutation p.G1243D 0.31 tolerated(0.14) benign(0.009) TCGA-VR-A8EY-01 12 133384931 133384931 T C GOLGA3 Missense_Mutation p.K242E 0.36 deleterious_low_confidence(0) possibly_damaging(0.547) TCGA-VR-A8EY-01 12 22354310 22354310 T C ST8SIA1 3'UTR 0.31 TCGA-VR-A8EY-01 12 93795826 93795826 G A NUDT4 3'UTR 0.16 TCGA-VR-A8EY-01 13 108183540 108183540 G T FAM155A Intron 0.25 TCGA-VR-A8EY-01 13 109793189 109793189 C T MYO16 Silent p.V1521V 0.48 TCGA-VR-A8EY-01 13 47266728 47266728 G C LRCH1 Missense_Mutation p.E358Q 0.25 tolerated(0.64) possibly_damaging(0.579) TCGA-VR-A8EY-01 14 101347177 101347177 C T RTL1 Missense_Mutation p.A1317T 0.33 tolerated_low_confidence(0.75) benign(0.007) TCGA-VR-A8EY-01 14 103193618 103193619 - C RCOR1 3'UTR 0.26 TCGA-VR-A8EY-01 14 21991676 21991676 C A SALL2 Missense_Mutation p.G729V 0.33 tolerated(0.47) possibly_damaging(0.826) TCGA-VR-A8EY-01 14 31085591 31085591 G T G2E3 Missense_Mutation p.V658L 0.42 tolerated(0.68) benign(0.004) TCGA-VR-A8EY-01 14 60976547 60976547 G A SIX6 Missense_Mutation p.R144H 0.34 deleterious(0) probably_damaging(0.993) TCGA-VR-A8EY-01 15 101910603 101910603 C T PCSK6 Missense_Mutation p.R552Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EY-01 15 80263190 80263190 G C BCL2A1 Missense_Mutation p.T91S 0.29 deleterious(0.01) probably_damaging(0.997) TCGA-VR-A8EY-01 16 20043281 20043281 T C GPR139 Missense_Mutation p.I280V 0.41 tolerated(1) benign(0.012) TCGA-VR-A8EY-01 16 4927081 4927081 C G UBN1 Silent p.A1078A 0.52 TCGA-VR-A8EY-01 16 87738888 87738888 G T FLJ00104 5'UTR 0.50 TCGA-VR-A8EY-01 16 920752 920752 G A LMF1 Silent p.V403V 0.43 TCGA-VR-A8EY-01 17 10401141 10401141 G C MYH1 Silent p.L1425L 0.26 TCGA-VR-A8EY-01 17 10428870 10428870 C A MYH2 Nonsense_Mutation p.E1479* 0.27 TCGA-VR-A8EY-01 17 11648203 11648203 C T DNAH9 Silent p.D2067D 0.23 TCGA-VR-A8EY-01 17 21319092 21319092 C T KCNJ12 Silent p.Y146Y 0.07 TCGA-VR-A8EY-01 17 38324562 38324562 T C CASC3 Silent p.P619P 0.67 TCGA-VR-A8EY-01 17 58275786 58275786 A T USP32 Missense_Mutation p.F1090Y 0.30 deleterious(0.05) probably_damaging(0.977) TCGA-VR-A8EY-01 17 6616733 6616733 C G SLC13A5 5'UTR 0.28 TCGA-VR-A8EY-01 17 7190439 7190439 T C SLC2A4 3'UTR 0.37 TCGA-VR-A8EY-01 17 73820554 73820555 TA - UNK 3'UTR 0.10 TCGA-VR-A8EY-01 17 7579563 7579563 C - TP53 Frame_Shift_Del p.D42Ifs*2 0.45 TCGA-VR-A8EY-01 17 76392413 76392413 C T PGS1 Missense_Mutation p.R120W 0.33 deleterious(0) probably_damaging(1) TCGA-VR-A8EY-01 17 7942529 7942529 G C ALOX15B Missense_Mutation p.W19S 0.30 tolerated(0.16) probably_damaging(0.999) TCGA-VR-A8EY-01 18 55314727 55314727 G A ATP8B1 3'UTR 0.38 TCGA-VR-A8EY-01 18 6927413 6927413 C T LINC00668 RNA 0.17 TCGA-VR-A8EY-01 19 21240141 21240141 A T ZNF430 Nonsense_Mutation p.K343* 0.26 TCGA-VR-A8EY-01 19 4217366 4217366 C T ANKRD24 Missense_Mutation p.R737W 0.41 tolerated_low_confidence(0.13) benign(0.001) TCGA-VR-A8EY-01 19 45406379 45406379 C T TOMM40 Missense_Mutation p.H347Y 0.35 deleterious(0.01) probably_damaging(0.995) TCGA-VR-A8EY-01 19 48887553 48887553 C T KDELR1 Missense_Mutation p.A180T 0.09 tolerated(0.07) possibly_damaging(0.531) TCGA-VR-A8EY-01 19 54312981 54312981 C A NLRP12 Missense_Mutation p.K644N 0.72 tolerated(0.07) benign(0.014) TCGA-VR-A8EY-01 19 55107747 55107747 C T LILRA1 Missense_Mutation p.P351L 0.62 tolerated(0.88) benign(0.049) TCGA-VR-A8EY-01 19 5719848 5719848 C - LONP1 Frame_Shift_Del p.G99Afs*11 0.40 TCGA-VR-A8EY-01 19 6719280 6719280 G A C3 Missense_Mutation p.S70F 0.11 tolerated(0.7) benign(0.001) TCGA-VR-A8EY-01 19 8117952 8117952 G T CCL25 Missense_Mutation p.A7S 0.35 tolerated(0.05) benign(0.122) TCGA-VR-A8EY-01 1 143119076 143119076 C T RP11-782C8.1 RNA 0.22 TCGA-VR-A8EY-01 1 156843511 156843511 C G NTRK1 Missense_Mutation p.L313V 0.39 deleterious(0.03) benign(0.2) TCGA-VR-A8EY-01 1 1572523 1572523 T C CDK11B Missense_Mutation p.K541E 0.10 unknown(0) TCGA-VR-A8EY-01 1 157746838 157746838 A G FCRL2 Missense_Mutation p.I9T 0.36 deleterious_low_confidence(0) benign(0.084) TCGA-VR-A8EY-01 1 1635742 1635742 T C CDK11A Missense_Mutation p.K536E 0.36 tolerated(0.11) unknown(0) TCGA-VR-A8EY-01 1 170967362 170967362 G T MROH9 Nonsense_Mutation p.E515* 0.24 TCGA-VR-A8EY-01 1 197126797 197126797 A C ZBTB41 3'UTR 0.31 TCGA-VR-A8EY-01 1 201847577 201847577 C G IPO9 3'UTR 0.43 TCGA-VR-A8EY-01 1 226128687 226128687 C T LEFTY2 Missense_Mutation p.V52I 0.40 tolerated(0.07) benign(0.036) TCGA-VR-A8EY-01 1 240255243 240255258 CAGATGCGAGCGGGGC - FMN2 5'UTR 0.21 TCGA-VR-A8EY-01 1 240938884 240938884 C G RGS7 3'UTR 0.43 TCGA-VR-A8EY-01 1 242264075 242264075 C G PLD5 Missense_Mutation p.D417H 0.33 tolerated(0.44) probably_damaging(0.972) TCGA-VR-A8EY-01 1 248367307 248367307 G C OR2M3 Nonstop_Mutation p.*313Sext*3 0.49 TCGA-VR-A8EY-01 1 74671545 74671545 T C FPGT 3'UTR 0.21 TCGA-VR-A8EY-01 20 32026730 32026733 ACAG - SNTA1 Frame_Shift_Del p.S137* 0.79 TCGA-VR-A8EY-01 20 50405596 50405596 G A SALL4 Missense_Mutation p.S849L 0.44 tolerated(0.18) benign(0.069) TCGA-VR-A8EY-01 21 10910363 10910363 C T TPTE Missense_Mutation p.D465N 0.09 tolerated(0.95) benign(0.004) TCGA-VR-A8EY-01 21 17191133 17191133 C G USP25 Missense_Mutation p.H350D 0.38 tolerated(0.26) benign(0.21) TCGA-VR-A8EY-01 22 17978486 17978486 C T CECR2 Silent p.D109D 0.42 TCGA-VR-A8EY-01 22 23437787 23437787 G A GNAZ 5'UTR 0.25 TCGA-VR-A8EY-01 22 32808177 32808177 C G RTCB 5'UTR 0.43 TCGA-VR-A8EY-01 22 38368452 38368452 C T SOX10 3'UTR 0.42 TCGA-VR-A8EY-01 2 125262121 125262121 G A CNTNAP5 Missense_Mutation p.E438K 0.05 deleterious(0.04) possibly_damaging(0.889) TCGA-VR-A8EY-01 2 145157783 145157783 G A ZEB2 Missense_Mutation p.S324F 0.66 deleterious(0) probably_damaging(0.994) TCGA-VR-A8EY-01 2 176996750 176996750 A - HOXD8 3'UTR 0.46 TCGA-VR-A8EY-01 2 21228972 21228972 C G APOB Missense_Mutation p.E3590Q 0.27 benign(0.028) TCGA-VR-A8EY-01 2 219346828 219346828 T C USP37 Silent p.P600P 0.63 TCGA-VR-A8EY-01 2 220399921 220399921 G A ASIC4 Silent p.P476P 0.36 TCGA-VR-A8EY-01 2 5840084 5840084 C - SOX11 3'UTR 0.19 TCGA-VR-A8EY-01 2 70910897 70910897 C T ADD2 Silent p.V317V 0.24 TCGA-VR-A8EY-01 2 73901066 73901066 G A ALMS1P RNA 0.23 TCGA-VR-A8EY-01 2 89976335 89976335 C T IGKV2D-30 Missense_Mutation p.P69L 0.23 deleterious(0.02) probably_damaging(0.986) TCGA-VR-A8EY-01 2 97217709 97217709 G A ARID5A Missense_Mutation p.G482S 0.10 tolerated(0.1) benign(0.067) TCGA-VR-A8EY-01 3 164709256 164709256 T C SI Missense_Mutation p.I1665V 0.32 tolerated(0.49) possibly_damaging(0.779) TCGA-VR-A8EY-01 3 167293772 167293772 G T WDR49 Silent p.A140A 0.19 TCGA-VR-A8EY-01 3 50225441 50225441 C T SEMA3F Missense_Mutation p.R751C 0.64 tolerated(0.08) possibly_damaging(0.836) TCGA-VR-A8EY-01 3 71247378 71247378 G A FOXP1 Missense_Mutation p.A52V 0.06 tolerated_low_confidence(0.74) benign(0.269) TCGA-VR-A8EY-01 3 74313560 74313560 G T CNTN3 Missense_Mutation p.L1027M 0.51 deleterious(0.02) possibly_damaging(0.839) TCGA-VR-A8EY-01 4 109745237 109745237 G C COL25A1 Intron 0.38 TCGA-VR-A8EY-01 4 175897001 175897002 GA T ADAM29 Frame_Shift_Del p.D109Sfs*21 0.31 TCGA-VR-A8EY-01 4 186324742 186324742 C T UFSP2 Missense_Mutation p.G410E 0.41 deleterious(0) probably_damaging(1) TCGA-VR-A8EY-01 4 41633188 41633188 G T LIMCH1 Intron 0.26 TCGA-VR-A8EY-01 4 46042955 46042955 T G GABRG1 3'UTR 0.34 TCGA-VR-A8EY-01 5 102895755 102895755 C - NUDT12 Frame_Shift_Del p.E67Rfs*28 0.36 TCGA-VR-A8EY-01 5 114951349 114951349 C G TMED7 3'UTR 0.42 TCGA-VR-A8EY-01 5 127611766 127611766 C T FBN2 Missense_Mutation p.G2520R 0.35 deleterious(0) probably_damaging(1) TCGA-VR-A8EY-01 5 170883890 170883890 G T FGF18 3'UTR 0.30 TCGA-VR-A8EY-01 5 31305356 31305356 C G CDH6 Missense_Mutation p.L359V 0.07 tolerated(0.17) benign(0.301) TCGA-VR-A8EY-01 5 33561131 33561131 C T ADAMTS12 Splice_Site p.X1375_splice 0.62 TCGA-VR-A8EY-01 5 5447558 5447558 C T KIAA0947 Missense_Mutation p.T148I 0.21 tolerated(0.24) benign(0.264) TCGA-VR-A8EY-01 5 72201229 72201229 G T TNPO1 Missense_Mutation p.G897C 0.39 deleterious(0) possibly_damaging(0.891) TCGA-VR-A8EY-01 5 89924433 89924433 G A GPR98 Silent p.A431A 0.29 TCGA-VR-A8EY-01 6 152545638 152545638 G C SYNE1 Missense_Mutation p.D7171E 0.28 benign(0.008) TCGA-VR-A8EY-01 6 28876806 28876806 A C TRIM27 Missense_Mutation p.I277S 0.34 tolerated(0.06) benign(0) TCGA-VR-A8EY-01 6 30612374 30612375 CA - ATAT1 Intron 0.25 TCGA-VR-A8EY-01 6 31664812 31664812 T G ABHD16A Splice_Site p.X115_splice 0.43 TCGA-VR-A8EY-01 6 73110497 73110497 A G RIMS1 3'Flank 0.41 TCGA-VR-A8EY-01 6 93956675 93956675 C T EPHA7 Missense_Mutation p.R854H 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-VR-A8EY-01 7 117864739 117864739 G A ANKRD7 5'UTR 0.34 TCGA-VR-A8EY-01 7 127999980 127999980 G A PRRT4 Silent p.G22G 0.22 TCGA-VR-A8EY-01 7 144071936 144071936 C T ARHGEF5 Missense_Mutation p.H1418Y 0.22 tolerated(0.53) benign(0.07) TCGA-VR-A8EY-01 7 158448144 158448144 C A NCAPG2 Missense_Mutation p.D798Y 0.37 tolerated(1) benign(0.076) TCGA-VR-A8EY-01 7 25266610 25266610 A C NPVF Missense_Mutation p.N58K 0.47 deleterious(0.01) benign(0.242) TCGA-VR-A8EY-01 7 30540160 30540160 A C GGCT Silent p.S93S 0.36 TCGA-VR-A8EY-01 7 42948996 42948996 T G C7orf25 3'Flank 0.30 TCGA-VR-A8EY-01 7 4899602 4899602 C G PAPOLB Missense_Mutation p.V613L 0.09 tolerated_low_confidence(0.13) benign(0.008) TCGA-VR-A8EY-01 7 62809792 62809792 C A AC006455.1 5'UTR 0.16 TCGA-VR-A8EY-01 7 82474678 82474678 G A PCLO Missense_Mutation p.S4652L 0.05 unknown(0) TCGA-VR-A8EY-01 7 82544508 82544508 C G PCLO Missense_Mutation p.G4265A 0.21 unknown(0) TCGA-VR-A8EY-01 7 82585180 82585180 G C PCLO Missense_Mutation p.P1697A 0.29 unknown(0) TCGA-VR-A8EY-01 7 94056317 94056317 A C COL1A2 Intron 0.33 TCGA-VR-A8EY-01 7 99074101 99074101 A G ZNF789 Missense_Mutation p.K8E 0.06 deleterious(0.02) benign(0.006) TCGA-VR-A8EY-01 8 113392631 113392631 A C CSMD3 Missense_Mutation p.F2029C 0.24 deleterious(0) probably_damaging(0.997) TCGA-VR-A8EY-01 8 144776548 144776548 G A ZNF707 Missense_Mutation p.G322S 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-VR-A8EY-01 8 19677964 19677964 T A INTS10 Missense_Mutation p.L126I 0.09 deleterious(0.03) possibly_damaging(0.741) TCGA-VR-A8EY-01 8 49647767 49647767 G A EFCAB1 5'UTR 0.36 TCGA-VR-A8EY-01 8 61135295 61135295 C A CA8 Silent p.V217V 0.19 TCGA-VR-A8EY-01 8 75765903 75765903 T C PI15 3'UTR 0.22 TCGA-VR-A8EY-01 9 101749650 101749650 G A COL15A1 Silent p.S241S 0.79 TCGA-VR-A8EY-01 9 115806537 115806537 C A ZFP37 Missense_Mutation p.D121Y 0.33 tolerated(0.12) benign(0.413) TCGA-VR-A8EY-01 9 137658326 137658326 G A COL5A1 Silent p.P705P 0.06 TCGA-VR-A8EY-01 9 139413042 139413042 C T NOTCH1 Splice_Site p.X367_splice 0.82 TCGA-VR-A8EY-01 9 34381092 34381092 C T C9orf24 Silent p.S170S 0.43 TCGA-VR-A8EY-01 9 8517873 8517873 G T PTPRD Missense_Mutation p.D506E 0.40 tolerated(0.37) benign(0.02) TCGA-VR-A8EY-01 9 94842356 94842356 T C SPTLC1 Silent p.A123A 0.41 TCGA-VR-A8EY-01 X 101095814 101095814 A G NXF5 Silent p.S178S 0.38 TCGA-VR-A8EY-01 X 101381791 101381791 G A TCEAL2 5'UTR 0.34 TCGA-VR-A8EY-01 X 106224144 106224144 C G MORC4 Missense_Mutation p.D305H 0.44 deleterious(0) possibly_damaging(0.874) TCGA-VR-A8EY-01 X 111700252 111700252 C G ZCCHC16 3'UTR 0.30 TCGA-VR-A8EY-01 X 119066177 119066177 T C NKAP Missense_Mutation p.K247R 0.32 tolerated(0.1) unknown(0) TCGA-VR-A8EY-01 X 128580984 128580984 G T SMARCA1 3'UTR 0.41 TCGA-VR-A8EY-01 X 140714645 140714645 A T RP1-171K16.5 RNA 0.30 TCGA-VR-A8EY-01 X 140993814 140993814 C G MAGEC1 Silent p.S208S 0.17 TCGA-VR-A8EY-01 X 152482520 152482520 G A MAGEA1 Missense_Mutation p.P164L 0.04 deleterious(0.03) possibly_damaging(0.861) TCGA-VR-A8EY-01 X 15364202 15364202 G A FIGF 3'UTR 0.40 TCGA-VR-A8EY-01 X 1584361 1584362 - C P2RY8 3'UTR 0.24 TCGA-VR-A8EY-01 X 18658899 18658899 G T RS1 3'UTR 0.44 TCGA-VR-A8EY-01 X 22117197 22117197 C T PHEX Missense_Mutation p.S336F 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-VR-A8EY-01 X 64721861 64721861 A G ZC3H12B Missense_Mutation p.K428R 0.30 tolerated(0.07) benign(0.183) TCGA-VR-A8EY-01 X 70460112 70460112 A T ZMYM3 3'UTR 0.44 TCGA-VR-A8EZ-01 10 105356821 105356821 C G SH3PXD2A 3'UTR 0.35 TCGA-VR-A8EZ-01 10 124352022 124352022 G C DMBT1 Missense_Mutation p.G804A 0.12 deleterious(0.01) unknown(0) TCGA-VR-A8EZ-01 10 12811688 12811688 A C CAMK1D Missense_Mutation p.Y152S 0.46 deleterious(0) possibly_damaging(0.688) TCGA-VR-A8EZ-01 10 15719594 15719594 G T ITGA8 Missense_Mutation p.Q225K 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-VR-A8EZ-01 10 17865242 17865242 G T MRC1L1 Silent p.V77V 0.18 TCGA-VR-A8EZ-01 10 31138755 31138755 C T ZNF438 Silent p.A193A 0.29 TCGA-VR-A8EZ-01 10 45472671 45472671 G A C10orf10 3'UTR 0.27 TCGA-VR-A8EZ-01 10 49444551 49444551 T C FRMPD2 Missense_Mutation p.T323A 0.27 tolerated(0.14) benign(0.141) TCGA-VR-A8EZ-01 10 50946061 50946061 T A OGDHL Missense_Mutation p.N817Y 0.19 tolerated(0.63) probably_damaging(0.954) TCGA-VR-A8EZ-01 10 68687865 68687865 G A LRRTM3 Silent p.P397P 0.17 TCGA-VR-A8EZ-01 10 88728258 88728258 G C ADIRF 5'UTR 0.54 TCGA-VR-A8EZ-01 11 10830442 10830442 C A EIF4G2 5'Flank 0.28 TCGA-VR-A8EZ-01 11 126137598 126137598 G C SRPR Missense_Mutation p.Q71E 0.21 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EZ-01 11 126294541 126294541 G T KIRREL3 Silent p.S757S 0.36 TCGA-VR-A8EZ-01 11 22400216 22400216 C A SLC17A6 3'UTR 0.23 TCGA-VR-A8EZ-01 11 27523450 27523450 C G LIN7C Missense_Mutation p.E19Q 0.07 tolerated_low_confidence(0.08) possibly_damaging(0.601) TCGA-VR-A8EZ-01 11 30431949 30431949 C G MPPED2 3'UTR 0.17 TCGA-VR-A8EZ-01 11 46407570 46407570 C A CHRM4 Missense_Mutation p.V180L 0.24 deleterious(0) probably_damaging(0.914) TCGA-VR-A8EZ-01 11 55594893 55594893 T C OR5L2 Missense_Mutation p.S67P 0.29 deleterious(0.01) benign(0.055) TCGA-VR-A8EZ-01 11 56237538 56237538 G T OR5M3 Missense_Mutation p.P146T 0.20 tolerated(0.16) benign(0.261) TCGA-VR-A8EZ-01 11 58607019 58607019 C A GLYATL2 Nonsense_Mutation p.E23* 0.13 TCGA-VR-A8EZ-01 11 61645046 61645046 C T FADS3 Silent p.L274L 0.12 TCGA-VR-A8EZ-01 11 64664919 64664919 G C ATG2A Silent p.S1705S 0.27 TCGA-VR-A8EZ-01 11 67399058 67399058 C A TBX10 3'UTR 0.25 TCGA-VR-A8EZ-01 11 72316222 72316222 C A PDE2A Nonsense_Mutation p.E95* 0.12 TCGA-VR-A8EZ-01 11 74705730 74705730 C T NEU3 Silent p.L91L 0.07 TCGA-VR-A8EZ-01 11 83167151 83167151 A G DLG2 3'Flank 0.13 TCGA-VR-A8EZ-01 11 88070930 88070931 - A CTSC 5'UTR 0.29 TCGA-VR-A8EZ-01 12 111180517 111180517 T C PPP1CC 5'UTR 0.48 TCGA-VR-A8EZ-01 12 112622969 112622969 C T HECTD4 Silent p.V3121V 0.22 TCGA-VR-A8EZ-01 12 121202639 121202639 T G SPPL3 3'UTR 0.14 TCGA-VR-A8EZ-01 12 121676556 121676556 G A CAMKK2 3'UTR 0.22 TCGA-VR-A8EZ-01 12 20807137 20807137 C T PDE3A Missense_Mutation p.P1061L 0.47 tolerated(0.17) benign(0.065) TCGA-VR-A8EZ-01 12 32908804 32908804 G T YARS2 Missense_Mutation p.A2E 0.64 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-VR-A8EZ-01 12 49413108 49413108 G A KMT2D 3'UTR 0.85 TCGA-VR-A8EZ-01 12 49413111 49413111 T A KMT2D 3'UTR 0.86 TCGA-VR-A8EZ-01 12 50749945 50749945 T A FAM186A Missense_Mutation p.I224F 0.18 deleterious(0) probably_damaging(0.975) TCGA-VR-A8EZ-01 12 57850342 57850342 A T INHBE Missense_Mutation p.D255V 0.89 deleterious(0) probably_damaging(0.976) TCGA-VR-A8EZ-01 12 6623482 6623482 C A NCAPD2 Missense_Mutation p.H213Q 0.21 tolerated(0.26) possibly_damaging(0.723) TCGA-VR-A8EZ-01 12 7842479 7842479 C A GDF3 Missense_Mutation p.G364W 0.83 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-VR-A8EZ-01 13 43986988 43986988 C G ENOX1 Missense_Mutation p.M21I 0.24 tolerated_low_confidence(0.71) benign(0) TCGA-VR-A8EZ-01 13 70274735 70274735 T - KLHL1 3'UTR 0.17 TCGA-VR-A8EZ-01 13 77579711 77579711 G A FBXL3 3'UTR 0.62 TCGA-VR-A8EZ-01 13 78211301 78211301 A G SCEL Missense_Mutation p.I604V 0.61 deleterious(0.03) probably_damaging(0.998) TCGA-VR-A8EZ-01 14 100172827 100172827 C T CYP46A1 Intron 0.20 TCGA-VR-A8EZ-01 14 101012872 101012872 C T BEGAIN Missense_Mutation p.E48K 0.25 deleterious(0) probably_damaging(0.996) TCGA-VR-A8EZ-01 14 101532274 101532274 A G MIR410 RNA 0.16 TCGA-VR-A8EZ-01 14 106950237 106950237 C T LINC00221 RNA 0.16 TCGA-VR-A8EZ-01 14 61446377 61446377 C A TRMT5 Missense_Mutation p.R80L 0.21 deleterious(0) possibly_damaging(0.856) TCGA-VR-A8EZ-01 14 67787942 67787942 C G MPP5 Missense_Mutation p.S569C 0.46 deleterious(0) probably_damaging(0.956) TCGA-VR-A8EZ-01 14 70839645 70839645 T C SYNJ2BP 3'UTR 0.32 TCGA-VR-A8EZ-01 14 92588341 92588341 G T CPSF2 5'UTR 0.46 TCGA-VR-A8EZ-01 15 26792519 26792519 T C GABRB3 3'UTR 0.25 TCGA-VR-A8EZ-01 15 65689261 65689261 T C IGDCC4 Missense_Mutation p.Q303R 0.45 tolerated(0.4) benign(0.034) TCGA-VR-A8EZ-01 15 68483936 68483936 T C CALML4 3'Flank 0.37 TCGA-VR-A8EZ-01 15 69652327 69652327 G C PAQR5 5'UTR 0.28 TCGA-VR-A8EZ-01 15 75985560 75985560 C T CSPG4 Missense_Mutation p.E35K 0.50 deleterious(0.02) benign(0.199) TCGA-VR-A8EZ-01 15 91295023 91295023 G C BLM Missense_Mutation p.S269T 0.21 tolerated(0.2) benign(0.021) TCGA-VR-A8EZ-01 16 11852417 11852417 T C ZC3H7A Intron 0.50 TCGA-VR-A8EZ-01 16 2326068 2326068 G C ABCA3 3'UTR 0.24 TCGA-VR-A8EZ-01 16 23400171 23400171 G C COG7 3'UTR 0.19 TCGA-VR-A8EZ-01 16 28511194 28511194 C T IL27 Silent p.E170E 0.15 TCGA-VR-A8EZ-01 16 28511197 28511197 T C IL27 Silent p.E169E 0.16 TCGA-VR-A8EZ-01 16 28620562 28620562 T C SULT1A1 Intron 0.32 TCGA-VR-A8EZ-01 16 31105918 31105918 C G VKORC1 Missense_Mutation p.V45L 0.13 tolerated(1) benign(0.165) TCGA-VR-A8EZ-01 16 31424553 31424553 C G ITGAD Nonsense_Mutation p.S661* 0.33 TCGA-VR-A8EZ-01 16 830591 830591 G A MSLNL Missense_Mutation p.A137V 0.29 benign(0.024) TCGA-VR-A8EZ-01 16 83065787 83065787 G T CDH13 Silent p.V157V 0.18 TCGA-VR-A8EZ-01 16 89807142 89807142 G T ZNF276 3'Flank 0.73 TCGA-VR-A8EZ-01 17 27031456 27031456 G A PROCA1 Intron 0.40 TCGA-VR-A8EZ-01 17 30327334 30327334 A T SUZ12 3'UTR 0.36 TCGA-VR-A8EZ-01 17 38027810 38027810 A G ZPBP2 Missense_Mutation p.Y113C 0.20 deleterious(0) probably_damaging(0.992) TCGA-VR-A8EZ-01 17 38178915 38178915 C T MED24 Silent p.P805P 0.31 TCGA-VR-A8EZ-01 17 39023236 39023236 C T KRT12 Missense_Mutation p.G68D 0.26 deleterious(0.02) unknown(0) TCGA-VR-A8EZ-01 17 40557038 40557038 G A PTRF Silent p.R280R 0.22 TCGA-VR-A8EZ-01 17 42293021 42293021 C - UBTF Splice_Site p.X158_splice 0.10 TCGA-VR-A8EZ-01 17 45199823 45199823 T C CDC27 Silent p.Q799Q 0.20 TCGA-VR-A8EZ-01 17 46627744 46627744 A G HOXB3 Silent p.P416P 0.16 TCGA-VR-A8EZ-01 17 50235351 50235351 A G CA10 5'UTR 0.12 TCGA-VR-A8EZ-01 17 56544249 56544249 G T HSF5 Missense_Mutation p.F339L 0.41 tolerated(0.06) possibly_damaging(0.472) TCGA-VR-A8EZ-01 17 56604047 56604047 G C SEPT4 Missense_Mutation p.S133C 0.10 deleterious(0) benign(0.019) TCGA-VR-A8EZ-01 17 59878759 59878759 C G BRIP1 Missense_Mutation p.C332S 0.16 tolerated(0.58) benign(0.008) TCGA-VR-A8EZ-01 17 60059673 60059673 C T MED13 Missense_Mutation p.D1231N 0.18 deleterious(0.02) probably_damaging(0.998) TCGA-VR-A8EZ-01 17 63010777 63010777 A T GNA13 Silent p.L244L 0.35 TCGA-VR-A8EZ-01 17 74621943 74621943 A T ST6GALNAC1 Silent p.T521T 0.09 TCGA-VR-A8EZ-01 17 7507177 7507177 A C FXR2 Missense_Mutation p.I116S 0.05 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EZ-01 17 7578542 7578542 G C TP53 Missense_Mutation p.L130V 0.58 deleterious(0) probably_damaging(0.997) TCGA-VR-A8EZ-01 18 13056017 13056017 A T CEP192 Missense_Mutation p.K1143I 0.31 deleterious(0.01) possibly_damaging(0.483) TCGA-VR-A8EZ-01 18 3084019 3084019 T A MYOM1 Missense_Mutation p.K1449M 0.36 deleterious(0.02) benign(0.023) TCGA-VR-A8EZ-01 18 59780447 59780447 C A PIGN Missense_Mutation p.V452L 0.25 tolerated(0.25) benign(0.026) TCGA-VR-A8EZ-01 18 64176315 64176315 C A CDH19 Missense_Mutation p.C582F 0.15 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EZ-01 19 13065136 13065136 C T GADD45GIP1 Silent p.K185K 0.39 TCGA-VR-A8EZ-01 19 13470461 13470461 G A CACNA1A Nonsense_Mutation p.Q313* 0.09 TCGA-VR-A8EZ-01 19 14515276 14515276 G A CD97 Missense_Mutation p.E511K 0.43 tolerated(0.44) benign(0.041) TCGA-VR-A8EZ-01 19 18541720 18541720 A G SSBP4 Missense_Mutation p.M117V 0.50 tolerated(0.37) benign(0.02) TCGA-VR-A8EZ-01 19 2877636 2877636 G C ZNF556 Missense_Mutation p.G227A 0.67 tolerated(0.12) probably_damaging(0.93) TCGA-VR-A8EZ-01 19 3532004 3532004 C T FZR1 Missense_Mutation p.R307W 0.17 deleterious(0) probably_damaging(0.971) TCGA-VR-A8EZ-01 19 36159309 36159309 G C UPK1A Intron 0.17 TCGA-VR-A8EZ-01 19 44661674 44661674 A T ZNF234 Missense_Mutation p.H502L 0.18 deleterious(0) probably_damaging(1) TCGA-VR-A8EZ-01 19 46376187 46376187 C G FOXA3 Missense_Mutation p.N308K 0.15 deleterious(0) probably_damaging(0.913) TCGA-VR-A8EZ-01 19 49843497 49843497 T A CD37 Intron 0.09 TCGA-VR-A8EZ-01 19 52568311 52568311 G C ZNF841 3'UTR 0.80 TCGA-VR-A8EZ-01 19 55716838 55716838 C A PTPRH Missense_Mutation p.D159Y 0.17 unknown(0) TCGA-VR-A8EZ-01 19 56243981 56243981 A T NLRP9 Missense_Mutation p.Y406N 0.54 tolerated(0.27) benign(0.035) TCGA-VR-A8EZ-01 19 56467027 56467027 C G NLRP8 Missense_Mutation p.H535D 0.08 tolerated(0.2) benign(0.077) TCGA-VR-A8EZ-01 19 6190785 6190785 G C ACSBG2 Intron 0.42 TCGA-VR-A8EZ-01 19 9448582 9448582 T A ZNF559 Intron 0.33 TCGA-VR-A8EZ-01 1 1026335 1026335 T C C1orf159 Intron 0.21 TCGA-VR-A8EZ-01 1 104114789 104114789 A G AMY2B Missense_Mutation p.R76G 0.51 deleterious(0.01) probably_damaging(0.999) TCGA-VR-A8EZ-01 1 111827665 111827665 T C CHIAP2 RNA 0.48 TCGA-VR-A8EZ-01 1 114483016 114483016 A T HIPK1 Missense_Mutation p.Q4L 0.30 deleterious(0) unknown(0) TCGA-VR-A8EZ-01 1 120298175 120298175 T G HMGCS2 Missense_Mutation p.K354N 0.19 deleterious(0.01) possibly_damaging(0.805) TCGA-VR-A8EZ-01 1 1396169 1396169 C T ATAD3C Silent p.F284F 0.33 TCGA-VR-A8EZ-01 1 145116546 145116546 T A SEC22B RNA 0.08 TCGA-VR-A8EZ-01 1 1470689 1470689 T A TMEM240 3'UTR 0.33 TCGA-VR-A8EZ-01 1 155147392 155147392 T A TRIM46 Intron 0.23 TCGA-VR-A8EZ-01 1 157512730 157512730 C T FCRL5 Missense_Mutation p.E348K 0.18 tolerated(0.48) possibly_damaging(0.526) TCGA-VR-A8EZ-01 1 158449905 158449905 T C OR10R2 Missense_Mutation p.Y80H 0.24 deleterious(0) probably_damaging(1) TCGA-VR-A8EZ-01 1 161519707 161519707 C T FCGR3A 5'UTR 0.31 TCGA-VR-A8EZ-01 1 171535752 171535752 G C PRRC2C Missense_Mutation p.E2108Q 0.26 probably_damaging(0.97) TCGA-VR-A8EZ-01 1 176832564 176832564 C G ASTN1 3'UTR 0.30 TCGA-VR-A8EZ-01 1 179013235 179013235 G A FAM20B Missense_Mutation p.G85R 0.34 deleterious(0.01) benign(0.285) TCGA-VR-A8EZ-01 1 187611070 187611070 C A ERVMER61-1 RNA 0.21 TCGA-VR-A8EZ-01 1 201187713 201187713 C A IGFN1 Silent p.V3275V 0.19 TCGA-VR-A8EZ-01 1 21503254 21503254 C A EIF4G3 5'UTR 0.62 TCGA-VR-A8EZ-01 1 215259722 215259722 G A KCNK2 Missense_Mutation p.D20N 0.17 tolerated_low_confidence(0.07) probably_damaging(0.998) TCGA-VR-A8EZ-01 1 216062375 216062375 G A USH2A Missense_Mutation p.P2539L 0.24 probably_damaging(0.998) TCGA-VR-A8EZ-01 1 225268267 225268267 G A DNAH14 Missense_Mutation p.V63M 0.49 tolerated(0.08) benign(0.246) TCGA-VR-A8EZ-01 1 232946075 232946075 G C MAP10 3'UTR 0.30 TCGA-VR-A8EZ-01 1 26604553 26604553 C A CEP85 3'UTR 0.62 TCGA-VR-A8EZ-01 1 70397207 70397207 C G LRRC7 Missense_Mutation p.A184G 0.21 deleterious(0.01) benign(0.007) TCGA-VR-A8EZ-01 1 70727271 70727271 G T ANKRD13C 3'UTR 0.22 TCGA-VR-A8EZ-01 1 89289999 89289999 G C PKN2 Missense_Mutation p.L783F 0.36 deleterious(0.01) probably_damaging(0.997) TCGA-VR-A8EZ-01 1 99150484 99150484 C A SNX7 Missense_Mutation p.P75Q 0.33 deleterious(0.04) possibly_damaging(0.477) TCGA-VR-A8EZ-01 20 33577641 33577641 G T MYH7B Missense_Mutation p.K604N 0.24 probably_damaging(0.999) TCGA-VR-A8EZ-01 20 43386383 43386383 T G RIMS4 Missense_Mutation p.N128H 0.38 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-VR-A8EZ-01 20 44439840 44439840 G C DNTTIP1 3'UTR 0.13 TCGA-VR-A8EZ-01 20 44513275 44513275 A G ZSWIM1 3'UTR 0.32 TCGA-VR-A8EZ-01 20 44513394 44513394 A G ZSWIM1 3'UTR 0.27 TCGA-VR-A8EZ-01 20 44513395 44513395 A G ZSWIM1 3'UTR 0.26 TCGA-VR-A8EZ-01 20 60581599 60581599 G A TAF4 Silent p.V730V 0.17 TCGA-VR-A8EZ-01 20 62194076 62194076 C T HELZ2 Silent p.L2033L 0.33 TCGA-VR-A8EZ-01 21 35743430 35743430 C A KCNE2 3'UTR 0.38 TCGA-VR-A8EZ-01 21 37605164 37605164 A G DOPEY2 Missense_Mutation p.T805A 0.67 tolerated(0.3) benign(0.001) TCGA-VR-A8EZ-01 22 37770857 37770857 C T ELFN2 Missense_Mutation p.V240I 0.45 tolerated(1) benign(0.002) TCGA-VR-A8EZ-01 22 39527194 39527194 C T CBX7 3'UTR 0.25 TCGA-VR-A8EZ-01 22 39909952 39909952 T C MIEF1 Missense_Mutation p.L339P 0.27 deleterious(0.01) possibly_damaging(0.773) TCGA-VR-A8EZ-01 2 100623662 100623662 A G AFF3 Silent p.T170T 0.45 TCGA-VR-A8EZ-01 2 106498469 106498469 G A NCK2 Silent p.V304V 0.30 TCGA-VR-A8EZ-01 2 109380774 109380774 C T RANBP2 Missense_Mutation p.S1260L 0.07 deleterious(0) possibly_damaging(0.448) TCGA-VR-A8EZ-01 2 141294187 141294187 G C LRP1B Missense_Mutation p.H2535Q 0.09 possibly_damaging(0.537) TCGA-VR-A8EZ-01 2 165811955 165811955 A T SLC38A11 5'UTR 0.33 TCGA-VR-A8EZ-01 2 166615871 166615871 T C GALNT3 Missense_Mutation p.R350G 0.30 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EZ-01 2 175614679 175614679 G A CHRNA1 Missense_Mutation p.R358W 0.23 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EZ-01 2 175614871 175614871 C G CHRNA1 Missense_Mutation p.V294L 0.20 deleterious(0.05) benign(0.405) TCGA-VR-A8EZ-01 2 179247885 179247885 G T OSBPL6 Missense_Mutation p.V611F 0.41 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EZ-01 2 179414518 179414533 GGGGCATCCCACCACA - TTN Frame_Shift_Del p.L30639Hfs*9 0.13 TCGA-VR-A8EZ-01 2 191873731 191873731 G T STAT1 Missense_Mutation p.F77L 0.67 tolerated(0.19) benign(0.113) TCGA-VR-A8EZ-01 2 21257724 21257724 C T APOB Missense_Mutation p.D290N 0.22 possibly_damaging(0.741) TCGA-VR-A8EZ-01 2 215646173 215646173 G T BARD1 Nonsense_Mutation p.S142* 0.74 TCGA-VR-A8EZ-01 2 225367752 225367752 C T CUL3 Missense_Mutation p.G472E 0.73 deleterious(0.03) probably_damaging(0.997) TCGA-VR-A8EZ-01 2 227973326 227973326 C T COL4A4 Missense_Mutation p.V236M 0.72 possibly_damaging(0.664) TCGA-VR-A8EZ-01 2 46372357 46372357 A G PRKCE Missense_Mutation p.Y573C 0.22 deleterious(0) probably_damaging(1) TCGA-VR-A8EZ-01 2 55529026 55529026 G A CCDC88A Nonsense_Mutation p.Q1551* 0.15 TCGA-VR-A8EZ-01 2 75882271 75882271 C G MRPL19 Missense_Mutation p.L247V 0.10 tolerated(0.13) benign(0.346) TCGA-VR-A8EZ-01 3 107764071 107764071 G C CD47 3'Flank 0.43 TCGA-VR-A8EZ-01 3 112282359 112282359 G C SLC35A5 Missense_Mutation p.V37L 0.47 tolerated(0.53) benign(0.002) TCGA-VR-A8EZ-01 3 156746172 156746172 T A LEKR1 Missense_Mutation p.F550Y 0.25 deleterious(0.01) benign(0.294) TCGA-VR-A8EZ-01 3 193409884 193409884 G A OPA1 Missense_Mutation p.A988T 0.20 deleterious(0.02) benign(0.119) TCGA-VR-A8EZ-01 3 195937566 195937566 A G ZDHHC19 Silent p.V63V 0.10 TCGA-VR-A8EZ-01 3 43122845 43122845 C T POMGNT2 Missense_Mutation p.E27K 0.21 deleterious_low_confidence(0.01) benign(0.339) TCGA-VR-A8EZ-01 3 49053422 49053422 G A DALRD3 Missense_Mutation p.A476V 0.88 deleterious(0.01) benign(0.039) TCGA-VR-A8EZ-01 3 67058470 67058470 C T KBTBD8 Silent p.T489T 0.04 TCGA-VR-A8EZ-01 4 100266027 100266027 C A ADH1C Missense_Mutation p.V187F 0.32 benign(0.198) TCGA-VR-A8EZ-01 4 13604639 13604639 C T BOD1L1 Silent p.S1295S 0.10 TCGA-VR-A8EZ-01 4 147363928 147363928 T C SLC10A7 Intron 0.11 TCGA-VR-A8EZ-01 4 151682999 151682999 C G LRBA Missense_Mutation p.E1861Q 0.71 deleterious(0) possibly_damaging(0.904) TCGA-VR-A8EZ-01 4 20493433 20493433 C T SLIT2 Silent p.A275A 0.29 TCGA-VR-A8EZ-01 4 40098975 40098975 G T N4BP2 Missense_Mutation p.R5S 0.17 deleterious(0) possibly_damaging(0.662) TCGA-VR-A8EZ-01 4 46086016 46086016 T C GABRG1 Missense_Mutation p.D103G 0.33 deleterious(0.04) possibly_damaging(0.528) TCGA-VR-A8EZ-01 4 55991617 55991617 G T KDR 5'UTR 0.14 TCGA-VR-A8EZ-01 4 72669648 72669648 T C GC Missense_Mutation p.S6G 0.30 tolerated_low_confidence(0.23) benign(0.012) TCGA-VR-A8EZ-01 4 88723869 88723869 C G IBSP Missense_Mutation p.R57G 0.15 deleterious(0) probably_damaging(0.976) TCGA-VR-A8EZ-01 5 102614021 102614021 C G C5orf30 3'UTR 0.56 TCGA-VR-A8EZ-01 5 114462496 114462496 G T TRIM36 Missense_Mutation p.Q631K 0.31 tolerated(0.33) probably_damaging(0.955) TCGA-VR-A8EZ-01 5 137260764 137260764 G A PKD2L2 Silent p.K529K 0.12 TCGA-VR-A8EZ-01 5 150409930 150409930 G A TNIP1 3'UTR 0.18 TCGA-VR-A8EZ-01 5 156908789 156908789 G C ADAM19 Intron 0.37 TCGA-VR-A8EZ-01 5 176011726 176011726 G T CDHR2 Missense_Mutation p.G815V 0.17 deleterious(0.02) benign(0.197) TCGA-VR-A8EZ-01 5 177099159 177099159 G C RP11-1277A3.2 5'Flank 0.09 TCGA-VR-A8EZ-01 5 177099160 177099160 C A RP11-1277A3.2 5'Flank 0.09 TCGA-VR-A8EZ-01 5 179289817 179289817 T C TBC1D9B 3'UTR 0.47 TCGA-VR-A8EZ-01 5 24491686 24491686 C G CDH10 Silent p.L625L 0.21 TCGA-VR-A8EZ-01 5 38991089 38991089 C A RICTOR Missense_Mutation p.R182I 0.50 deleterious(0) probably_damaging(0.999) TCGA-VR-A8EZ-01 5 40853632 40853632 T A CARD6 Missense_Mutation p.L733H 0.20 deleterious(0) benign(0.213) TCGA-VR-A8EZ-01 5 41186174 41186174 C G C6 Missense_Mutation p.E242Q 0.15 tolerated(0.82) benign(0.026) TCGA-VR-A8EZ-01 5 56179413 56179413 A G MAP3K1 Silent p.E1242E 0.48 TCGA-VR-A8EZ-01 5 58147162 58147162 C A RAB3C Missense_Mutation p.P223H 0.31 tolerated(0.1) benign(0.011) TCGA-VR-A8EZ-01 5 9066719 9066719 T A SEMA5A Nonsense_Mutation p.K705* 0.58 TCGA-VR-A8EZ-01 6 106536292 106536292 C A PRDM1 Missense_Mutation p.L87M 0.26 deleterious(0) probably_damaging(1) TCGA-VR-A8EZ-01 6 106967402 106967402 G A AIM1 Silent p.E365E 0.36 TCGA-VR-A8EZ-01 6 109980576 109980576 C G AK9 Missense_Mutation p.R162T 0.40 deleterious(0) probably_damaging(0.997) TCGA-VR-A8EZ-01 6 110083318 110083318 A C FIG4 Silent p.R432R 0.15 TCGA-VR-A8EZ-01 6 128540204 128540204 T A PTPRK Missense_Mutation p.K244M 0.46 deleterious(0) possibly_damaging(0.755) TCGA-VR-A8EZ-01 6 132172330 132172330 C A ENPP1 Missense_Mutation p.T160N 0.29 tolerated(0.26) benign(0.102) TCGA-VR-A8EZ-01 6 138756407 138756407 G C NHSL1 Intron 0.14 TCGA-VR-A8EZ-01 6 139498225 139498225 G A HECA Missense_Mutation p.V539I 0.53 deleterious(0.02) probably_damaging(0.987) TCGA-VR-A8EZ-01 6 152702455 152702455 T A SYNE1 Nonsense_Mutation p.R2899* 0.41 TCGA-VR-A8EZ-01 6 29364590 29364590 T A OR12D2 Silent p.T38T 0.70 TCGA-VR-A8EZ-01 6 30128472 30128472 G A TRIM10 Missense_Mutation p.P55L 0.30 tolerated(0.93) benign(0.014) TCGA-VR-A8EZ-01 6 31592989 31592989 G A PRRC2A Missense_Mutation p.E169K 0.35 unknown(0) TCGA-VR-A8EZ-01 6 33990592 33990592 G T GRM4 3'UTR 0.70 TCGA-VR-A8EZ-01 6 41078986 41078986 G T ADCY10P1 RNA 0.29 TCGA-VR-A8EZ-01 6 43148477 43148477 C T SRF 3'UTR 0.20 TCGA-VR-A8EZ-01 6 47251781 47251781 T C TNFRSF21 Missense_Mutation p.K379R 0.05 deleterious(0.02) possibly_damaging(0.452) TCGA-VR-A8EZ-01 6 64499116 64499116 C A EYS Silent p.G2471G 0.15 TCGA-VR-A8EZ-01 6 72922726 72922726 C T RIMS1 Intron 0.19 TCGA-VR-A8EZ-01 7 100652377 100652377 T C MUC12 Missense_Mutation p.M5063T 0.11 benign(0.095) TCGA-VR-A8EZ-01 7 107600921 107600921 G C LAMB1 Missense_Mutation p.S761R 0.09 deleterious(0.01) benign(0.167) TCGA-VR-A8EZ-01 7 111503550 111503550 G C DOCK4 Missense_Mutation p.A784G 0.51 tolerated(0.09) probably_damaging(0.991) TCGA-VR-A8EZ-01 7 150840668 150840668 G C AGAP3 Silent p.T838T 0.18 TCGA-VR-A8EZ-01 7 158727131 158727131 G T WDR60 Missense_Mutation p.R890I 0.50 deleterious(0) possibly_damaging(0.766) TCGA-VR-A8EZ-01 7 27282614 27282614 T G EVX1 5'UTR 0.61 TCGA-VR-A8EZ-01 7 43918839 43918839 C A URGCP Nonsense_Mutation p.E75* 0.16 TCGA-VR-A8EZ-01 7 5161474 5161474 T G ZNF890P RNA 0.21 TCGA-VR-A8EZ-01 7 5348561 5348561 C A TNRC18 Missense_Mutation p.S2882I 0.16 unknown(0) TCGA-VR-A8EZ-01 7 65444472 65444472 C G GUSB Missense_Mutation p.G213A 0.15 deleterious(0.01) possibly_damaging(0.817) TCGA-VR-A8EZ-01 7 73456951 73456951 C G ELN Silent p.G80G 0.44 TCGA-VR-A8EZ-01 7 7491958 7491958 C A COL28A1 Missense_Mutation p.G501C 0.28 deleterious(0.01) probably_damaging(1) TCGA-VR-A8EZ-01 7 77649090 77649090 C G MAGI2 Missense_Mutation p.G1304R 0.29 deleterious(0.03) possibly_damaging(0.618) TCGA-VR-A8EZ-01 7 84685162 84685162 A T SEMA3D Silent p.I244I 0.22 TCGA-VR-A8EZ-01 7 96639848 96639848 C T DLX6 3'UTR 0.18 TCGA-VR-A8EZ-01 8 12592793 12592793 A G LONRF1 Splice_Site p.X522_splice 0.31 TCGA-VR-A8EZ-01 8 145626338 145626338 G A CPSF1 Silent p.H173H 0.29 TCGA-VR-A8EZ-01 8 26265848 26265848 C A BNIP3L Missense_Mutation p.F189L 0.24 tolerated(0.12) benign(0.137) TCGA-VR-A8EZ-01 8 29964500 29964500 G T LEPROTL1 Intron 0.14 TCGA-VR-A8EZ-01 8 30701460 30701460 C G TEX15 Missense_Mutation p.E1692Q 0.23 deleterious(0) probably_damaging(0.998) TCGA-VR-A8EZ-01 8 35583947 35583947 G T UNC5D Missense_Mutation p.M527I 0.32 tolerated(0.19) benign(0.001) TCGA-VR-A8EZ-01 8 72110754 72110754 C G EYA1 3'UTR 0.26 TCGA-VR-A8EZ-01 8 99054886 99054886 A - RPL30 Frame_Shift_Del p.I96Sfs*33 0.21 TCGA-VR-A8EZ-01 8 99153104 99153104 G C POP1 Missense_Mutation p.E528Q 0.04 tolerated(0.11) benign(0.025) TCGA-VR-A8EZ-01 9 102628028 102628028 G C NR4A3 3'UTR 0.15 TCGA-VR-A8EZ-01 9 118949454 118949455 - T PAPPA Frame_Shift_Ins p.I147Yfs*4 0.43 TCGA-VR-A8EZ-01 9 127113426 127113426 T C NEK6 3'UTR 0.06 TCGA-VR-A8EZ-01 9 139409151 139409151 C G NOTCH1 Missense_Mutation p.S673T 0.24 tolerated(0.4) benign(0.023) TCGA-VR-A8EZ-01 9 139915182 139915182 C T ABCA2 Nonsense_Mutation p.W410* 0.16 TCGA-VR-A8EZ-01 9 26947000 26947000 C T PLAA Missense_Mutation p.R15Q 0.05 tolerated(0.54) benign(0.002) TCGA-VR-A8EZ-01 9 40715957 40715957 A G FAM74A3 RNA 0.15 TCGA-VR-A8EZ-01 9 712040 712040 C T KANK1 Missense_Mutation p.A425V 0.09 tolerated(0.78) benign(0.005) TCGA-VR-A8EZ-01 9 73002625 73002625 G A KLF9 3'UTR 0.50 TCGA-VR-A8EZ-01 X 12828231 12828231 A G PRPS2 Missense_Mutation p.I169V 0.46 tolerated(1) benign(0.002) TCGA-VR-A8EZ-01 X 134481196 134481196 C G ZNF449 Silent p.L51L 0.33 TCGA-VR-A8EZ-01 X 14891657 14891657 G T MOSPD2 Nonsense_Mutation p.E3* 0.63 TCGA-VR-A8EZ-01 X 153197547 153197547 G C NAA10 Silent p.L121L 0.48 TCGA-VR-A8EZ-01 X 45605608 45605608 G C MIR221 RNA 0.24 TCGA-VR-A8EZ-01 X 56591114 56591114 C T UBQLN2 Missense_Mutation p.R270C 0.80 deleterious(0) benign(0.348) TCGA-VR-A8EZ-01 X 71350086 71350086 T C RGAG4 Silent p.E435E 0.91 TCGA-VR-A8EZ-01 X 73962184 73962184 A G KIAA2022 Silent p.A736A 0.51 TCGA-VR-A8Q7-01 10 11371790 11371790 T A CELF2 Intron 0.19 TCGA-VR-A8Q7-01 10 131635637 131635637 C T EBF3 3'UTR 0.07 TCGA-VR-A8Q7-01 10 135015007 135015007 A G KNDC1 Missense_Mutation p.K998E 0.07 tolerated(0.29) benign(0.082) TCGA-VR-A8Q7-01 10 42965691 42965691 T C CCNYL2 RNA 0.16 TCGA-VR-A8Q7-01 10 64567946 64567946 A G ADO 3'UTR 0.17 TCGA-VR-A8Q7-01 10 81918943 81918943 C A ANXA11 Nonsense_Mutation p.E397* 0.11 TCGA-VR-A8Q7-01 10 92502148 92502148 A G HTR7 3'UTR 0.10 TCGA-VR-A8Q7-01 10 93388602 93388602 G C PPP1R3C 3'UTR 0.12 TCGA-VR-A8Q7-01 11 115049492 115049492 G A CADM1 Missense_Mutation p.S361F 0.15 deleterious(0) possibly_damaging(0.781) TCGA-VR-A8Q7-01 11 120930683 120930683 C G TBCEL Missense_Mutation p.P282R 0.22 deleterious(0) probably_damaging(0.992) TCGA-VR-A8Q7-01 11 124135465 124135465 C T OR8G5 Missense_Mutation p.T248I 0.26 tolerated(0.09) benign(0.163) TCGA-VR-A8Q7-01 11 21306014 21306014 G A NELL1 Intron 0.29 TCGA-VR-A8Q7-01 11 46402059 46402059 T A DGKZ 3'UTR 0.45 TCGA-VR-A8Q7-01 11 47362785 47362785 G A MYBPC3 Silent p.L601L 0.25 TCGA-VR-A8Q7-01 11 56431333 56431333 C T OR5AR1 Missense_Mutation p.P58S 0.22 deleterious(0.02) possibly_damaging(0.788) TCGA-VR-A8Q7-01 11 65271488 65271488 G C MALAT1 RNA 0.42 TCGA-VR-A8Q7-01 11 6631755 6631755 C T ILK Silent p.L424L 0.23 TCGA-VR-A8Q7-01 11 66325358 66325358 C T CTD-3074O7.2 3'Flank 0.11 TCGA-VR-A8Q7-01 11 75897448 75897448 C T WNT11 3'UTR 0.25 TCGA-VR-A8Q7-01 11 93416746 93416746 G C KIAA1731 Missense_Mutation p.E263Q 0.20 deleterious(0) probably_damaging(0.997) TCGA-VR-A8Q7-01 12 122257764 122257764 G C SETD1B Silent p.V1248V 0.39 TCGA-VR-A8Q7-01 12 21447016 21447016 C G SLCO1A2 Missense_Mutation p.D434H 0.50 tolerated(0.08) benign(0.003) TCGA-VR-A8Q7-01 12 40919410 40919410 C T MUC19 Intron 0.43 TCGA-VR-A8Q7-01 12 70738008 70738008 T C CNOT2 Missense_Mutation p.L464P 0.11 deleterious(0) probably_damaging(1) TCGA-VR-A8Q7-01 12 77247116 77247116 G C ZDHHC17 3'UTR 0.08 TCGA-VR-A8Q7-01 12 78392116 78392116 G T NAV3 Splice_Site p.X247_splice 0.41 TCGA-VR-A8Q7-01 12 8276480 8276480 T G CLEC4A Silent p.T2T 0.59 TCGA-VR-A8Q7-01 12 85492759 85492759 A T LRRIQ1 Missense_Mutation p.I1066F 0.10 deleterious(0) benign(0.398) TCGA-VR-A8Q7-01 12 9208308 9208308 A G LINC00612 RNA 0.46 TCGA-VR-A8Q7-01 13 111077333 111077333 G A COL4A2 Missense_Mutation p.D117N 0.07 possibly_damaging(0.586) TCGA-VR-A8Q7-01 13 23915230 23915230 G A SACS Missense_Mutation p.R929C 0.26 possibly_damaging(0.53) TCGA-VR-A8Q7-01 13 25016071 25016072 TT - PARP4 Frame_Shift_Del p.K1193Sfs*3 0.14 TCGA-VR-A8Q7-01 13 43537397 43537397 T C EPSTI1 Silent p.R161R 0.11 TCGA-VR-A8Q7-01 13 99083388 99083388 G C FARP1 Missense_Mutation p.R666T 0.41 deleterious(0) probably_damaging(0.967) TCGA-VR-A8Q7-01 14 100599115 100599115 T C EVL Missense_Mutation p.M300T 0.40 tolerated(0.87) benign(0) TCGA-VR-A8Q7-01 14 106471256 106471256 T G IGHV1-3 Missense_Mutation p.Y114S 0.18 deleterious(0) probably_damaging(0.972) TCGA-VR-A8Q7-01 14 80158529 80158529 T C NRXN3 Intron 0.48 TCGA-VR-A8Q7-01 14 89623682 89623682 A C FOXN3 3'UTR 0.27 TCGA-VR-A8Q7-01 15 75714814 75714814 A C SIN3A Intron 0.23 TCGA-VR-A8Q7-01 16 28549406 28549406 C T NUPR1 Silent p.G79G 0.12 TCGA-VR-A8Q7-01 16 47115515 47115515 T G NETO2 3'UTR 0.43 TCGA-VR-A8Q7-01 16 53967949 53967949 G C FTO Missense_Mutation p.R431T 0.52 deleterious(0.01) benign(0.243) TCGA-VR-A8Q7-01 16 67671824 67671824 G A CTCF 3'UTR 0.10 TCGA-VR-A8Q7-01 16 81219257 81219257 G A PKD1L2 5'Flank 0.47 TCGA-VR-A8Q7-01 17 18137986 18137986 A G LLGL1 Missense_Mutation p.N292D 0.29 deleterious(0.01) benign(0.297) TCGA-VR-A8Q7-01 17 32908041 32908041 G A TMEM132E 5'UTR 0.49 TCGA-VR-A8Q7-01 17 32953491 32953491 C T TMEM132E Missense_Mutation p.S138L 0.48 deleterious(0) possibly_damaging(0.453) TCGA-VR-A8Q7-01 17 41601024 41601024 A G DHX8 Missense_Mutation p.T1158A 0.17 deleterious(0.03) benign(0.112) TCGA-VR-A8Q7-01 17 66992115 66992115 T G ABCA9 Missense_Mutation p.Y1159S 0.13 tolerated(0.33) benign(0.004) TCGA-VR-A8Q7-01 17 73726332 73726332 G C ITGB4 Missense_Mutation p.G250A 0.12 deleterious(0.03) probably_damaging(0.912) TCGA-VR-A8Q7-01 17 74134094 74134094 C T FOXJ1 Silent p.A202A 0.13 TCGA-VR-A8Q7-01 17 7577106 7577106 G C TP53 Missense_Mutation p.P278A 0.54 deleterious(0.01) probably_damaging(1) TCGA-VR-A8Q7-01 17 79633892 79633892 G T CCDC137 Silent p.L32L 0.31 TCGA-VR-A8Q7-01 18 19284763 19284763 C A ABHD3 5'UTR 0.63 TCGA-VR-A8Q7-01 18 5892004 5892004 G C TMEM200C Missense_Mutation p.P20R 0.11 deleterious(0) probably_damaging(0.997) TCGA-VR-A8Q7-01 18 61377452 61377452 G A SERPINB11 Missense_Mutation p.V9I 0.09 tolerated(0.33) benign(0.013) TCGA-VR-A8Q7-01 18 6912058 6912058 G T ARHGAP28 Splice_Site p.X540_splice 0.15 TCGA-VR-A8Q7-01 19 11152145 11152145 C T SMARCA4 Missense_Mutation p.R1445W 0.72 probably_damaging(0.978) TCGA-VR-A8Q7-01 19 30936428 30936428 C T ZNF536 Silent p.H653H 0.35 TCGA-VR-A8Q7-01 19 36831606 36831606 C T ZFP14 Silent p.G374G 0.09 TCGA-VR-A8Q7-01 19 4048040 4048040 C T ZBTB7A Missense_Mutation p.G489S 0.14 tolerated(0.61) possibly_damaging(0.77) TCGA-VR-A8Q7-01 19 42791176 42791177 - TGTT CIC Frame_Shift_Ins p.A81Cfs*4 0.44 TCGA-VR-A8Q7-01 19 4543276 4543276 C A SEMA6B 3'UTR 0.25 TCGA-VR-A8Q7-01 19 4543277 4543277 C G SEMA6B 3'UTR 0.24 TCGA-VR-A8Q7-01 19 47960551 47960551 G A SLC8A2 Missense_Mutation p.H326Y 0.64 tolerated(0.34) benign(0.006) TCGA-VR-A8Q7-01 19 50905960 50905960 G C POLD1 Missense_Mutation p.R311P 0.14 deleterious(0) probably_damaging(0.997) TCGA-VR-A8Q7-01 19 57286355 57286355 G T ZIM2 Missense_Mutation p.Q429K 0.25 tolerated(0.05) benign(0.326) TCGA-VR-A8Q7-01 19 5788046 5788046 A G DUS3L Missense_Mutation p.F362L 0.52 deleterious(0) probably_damaging(0.999) TCGA-VR-A8Q7-01 1 101704654 101704654 C T S1PR1 Silent p.S38S 0.29 TCGA-VR-A8Q7-01 1 110172511 110172511 C - AMPD2 Frame_Shift_Del p.N706Kfs*71 0.19 TCGA-VR-A8Q7-01 1 13001384 13001384 A C PRAMEF6 Missense_Mutation p.L100R 0.08 deleterious(0) probably_damaging(0.96) TCGA-VR-A8Q7-01 1 13365855 13365855 T G PRAMEF5 Missense_Mutation p.L100R 0.10 deleterious(0) probably_damaging(0.96) TCGA-VR-A8Q7-01 1 155185406 155185406 A T MTX1 3'Flank 0.10 TCGA-VR-A8Q7-01 1 158063493 158063493 C T KIRREL Missense_Mutation p.R554W 0.17 deleterious(0) possibly_damaging(0.791) TCGA-VR-A8Q7-01 1 171086361 171086361 G A FMO3 Missense_Mutation p.E460K 0.30 tolerated(0.29) benign(0.12) TCGA-VR-A8Q7-01 1 182443066 182443066 G T RGSL1 Missense_Mutation p.A274S 0.34 tolerated(0.87) benign(0.002) TCGA-VR-A8Q7-01 1 225237932 225237932 C A DNAH14 Missense_Mutation p.Q616K 0.53 tolerated(0.18) benign(0) TCGA-VR-A8Q7-01 1 229567270 229567270 G T ACTA1 Silent p.S370S 0.35 TCGA-VR-A8Q7-01 1 23636857 23636857 A T HNRNPR 3'UTR 0.38 TCGA-VR-A8Q7-01 1 24460793 24460793 G A IL22RA1 Missense_Mutation p.R147C 0.36 tolerated(0.07) benign(0.014) TCGA-VR-A8Q7-01 20 39990470 39990470 A G EMILIN3 Missense_Mutation p.L580P 0.10 deleterious(0) probably_damaging(0.982) TCGA-VR-A8Q7-01 20 62871250 62871250 G A MYT1 Silent p.P1077P 0.09 TCGA-VR-A8Q7-01 21 34974620 34974641 TGTGCTAACTGAATAGCTATTG - CRYZL1 Frame_Shift_Del p.T159Ifs*7 0.43 TCGA-VR-A8Q7-01 22 20109826 20109826 C G RANBP1 Silent p.L64L 0.30 TCGA-VR-A8Q7-01 22 38201158 38201158 G A H1F0 5'UTR 0.33 TCGA-VR-A8Q7-01 2 120980160 120980160 G C TMEM185B Silent p.V131V 0.27 TCGA-VR-A8Q7-01 2 153577006 153577006 T C ARL6IP6 Intron 0.25 TCGA-VR-A8Q7-01 2 172305296 172305296 A T DCAF17 Nonsense_Mutation p.K143* 0.11 TCGA-VR-A8Q7-01 2 179428350 179428350 G T TTN Silent p.G27503G 0.28 TCGA-VR-A8Q7-01 2 186620970 186620970 C G FSIP2 Missense_Mutation p.P437R 0.16 benign(0.022) TCGA-VR-A8Q7-01 2 209150489 209150489 T C PIKFYVE Missense_Mutation p.L218S 0.18 deleterious(0) probably_damaging(0.998) TCGA-VR-A8Q7-01 2 237032618 237032618 C T AGAP1 Missense_Mutation p.A809V 0.28 deleterious(0.01) probably_damaging(0.963) TCGA-VR-A8Q7-01 2 240968939 240968939 T C OR6B2 Missense_Mutation p.K303R 0.05 tolerated(0.34) benign(0.007) TCGA-VR-A8Q7-01 2 241979571 241979571 C T SNED1 Silent p.C375C 0.12 TCGA-VR-A8Q7-01 2 27275949 27275949 C A AGBL5 Silent p.A41A 0.32 TCGA-VR-A8Q7-01 2 32661251 32661251 A T BIRC6 Missense_Mutation p.K1210N 0.10 benign(0.068) TCGA-VR-A8Q7-01 2 33413734 33413734 C A LTBP1 Missense_Mutation p.P506Q 0.38 tolerated(0.08) benign(0.018) TCGA-VR-A8Q7-01 2 37428939 37428939 T C CEBPZ Missense_Mutation p.T1045A 0.31 tolerated(0.79) unknown(0) TCGA-VR-A8Q7-01 2 65538410 65538410 T A SPRED2 3'UTR 0.31 TCGA-VR-A8Q7-01 2 75921495 75921495 G C GCFC2 Missense_Mutation p.Q298E 0.11 tolerated(0.61) benign(0.01) TCGA-VR-A8Q7-01 2 85921438 85921438 C T GNLY 5'UTR 0.29 TCGA-VR-A8Q7-01 2 97427122 97427122 C A CNNM4 Missense_Mutation p.S129Y 0.25 deleterious(0) possibly_damaging(0.73) TCGA-VR-A8Q7-01 2 97508119 97508119 C T ANKRD23 Missense_Mutation p.E53K 0.38 tolerated(0.11) possibly_damaging(0.459) TCGA-VR-A8Q7-01 3 107435527 107435527 G A BBX Missense_Mutation p.R79Q 0.18 deleterious(0) probably_damaging(0.99) TCGA-VR-A8Q7-01 3 120365861 120365861 C T HGD Missense_Mutation p.G170S 0.25 deleterious(0.01) probably_damaging(0.992) TCGA-VR-A8Q7-01 3 126423151 126423151 T C CHCHD6 5'UTR 0.10 TCGA-VR-A8Q7-01 3 129151262 129151262 C T MBD4 Intron 0.31 TCGA-VR-A8Q7-01 3 142511809 142511809 G A TRPC1 Silent p.Q527Q 0.43 TCGA-VR-A8Q7-01 3 149238505 149238505 C A WWTR1 3'UTR 0.30 TCGA-VR-A8Q7-01 3 186953887 186953887 G T MASP1 Missense_Mutation p.A591D 0.24 deleterious(0) possibly_damaging(0.861) TCGA-VR-A8Q7-01 3 25672379 25672379 C T TOP2B Missense_Mutation p.A435T 0.52 deleterious(0.02) benign(0.047) TCGA-VR-A8Q7-01 3 33188551 33188551 C T CRTAP 3'UTR 0.38 TCGA-VR-A8Q7-01 3 72426588 72426588 T C RYBP 3'UTR 0.35 TCGA-VR-A8Q7-01 3 9100060 9100060 C A SRGAP3 Missense_Mutation p.D300Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-VR-A8Q7-01 3 93593094 93593094 A T PROS1 Missense_Mutation p.S676T 0.16 tolerated_low_confidence(0.13) benign(0.012) TCGA-VR-A8Q7-01 4 156136360 156136360 T C NPY2R 3'UTR 0.20 TCGA-VR-A8Q7-01 4 158254480 158254480 A C GRIA2 Missense_Mutation p.E377A 0.37 deleterious(0) probably_damaging(1) TCGA-VR-A8Q7-01 4 186380437 186380437 A T CCDC110 Missense_Mutation p.L435Q 0.09 deleterious(0) probably_damaging(1) TCGA-VR-A8Q7-01 4 206477 206477 T C ZNF876P RNA 0.34 TCGA-VR-A8Q7-01 4 36345331 36345331 T - DTHD1 Frame_Shift_Del p.L744Rfs*35 0.29 TCGA-VR-A8Q7-01 4 79460559 79460559 G A FRAS1 Missense_Mutation p.D3804N 0.50 probably_damaging(1) TCGA-VR-A8Q7-01 5 10973545 10973545 G A CTNND2 3'UTR 0.14 TCGA-VR-A8Q7-01 5 13870950 13870950 G C DNAH5 Missense_Mutation p.R1254G 0.21 benign(0.111) TCGA-VR-A8Q7-01 5 140729955 140729955 C T PCDHGB1 Missense_Mutation p.S43L 0.30 deleterious(0.01) benign(0.133) TCGA-VR-A8Q7-01 5 149375184 149375187 GAAT - TIGD6 Frame_Shift_Del p.H242Pfs*14 0.27 TCGA-VR-A8Q7-01 5 149900924 149900924 C T NDST1 Silent p.Y36Y 0.30 TCGA-VR-A8Q7-01 5 160049468 160049468 T A ATP10B Missense_Mutation p.D582V 0.47 deleterious(0) probably_damaging(1) TCGA-VR-A8Q7-01 5 170817096 170817096 G C NPM1 Missense_Mutation p.D34H 0.19 deleterious(0.01) probably_damaging(0.929) TCGA-VR-A8Q7-01 5 17354553 17354553 G A CTD-2139B15.2 RNA 0.31 TCGA-VR-A8Q7-01 5 176308099 176308099 C T HK3 Missense_Mutation p.R916H 0.56 deleterious(0) probably_damaging(1) TCGA-VR-A8Q7-01 5 31424578 31424578 C G DROSHA Missense_Mutation p.D1073H 0.09 deleterious(0.01) possibly_damaging(0.497) TCGA-VR-A8Q7-01 5 38490352 38490352 C A LIFR Nonsense_Mutation p.G703* 0.10 TCGA-VR-A8Q7-01 5 79030465 79030465 A G CMYA5 Silent p.Q1959Q 0.37 TCGA-VR-A8Q7-01 6 118881345 118881345 C T PLN 3'UTR 0.22 TCGA-VR-A8Q7-01 6 24588968 24588968 T C KIAA0319 Missense_Mutation p.S283G 0.38 tolerated(0.09) benign(0.024) TCGA-VR-A8Q7-01 6 50815237 50815237 A C TFAP2B 3'UTR 0.32 TCGA-VR-A8Q7-01 7 120782104 120782104 A G CPED1 Missense_Mutation p.E655G 0.08 tolerated(0.13) benign(0.355) TCGA-VR-A8Q7-01 7 1273157 1273157 C A UNCX Missense_Mutation p.D92E 0.08 deleterious(0.04) benign(0.168) TCGA-VR-A8Q7-01 7 14652969 14652969 C T DGKB Missense_Mutation p.E453K 0.13 tolerated(0.11) benign(0.292) TCGA-VR-A8Q7-01 7 6000459 6000459 C T RSPH10B Missense_Mutation p.V146M 0.33 tolerated(0.32) benign(0.103) TCGA-VR-A8Q7-01 7 81218218 81218218 A C AC010091.1 RNA 0.15 TCGA-VR-A8Q7-01 8 106816113 106816113 A T ZFPM2 3'UTR 0.19 TCGA-VR-A8Q7-01 8 141461322 141461322 G A TRAPPC9 Nonsense_Mutation p.R149* 0.45 TCGA-VR-A8Q7-01 8 144519895 144519895 C A ZC3H3 3'UTR 0.25 TCGA-VR-A8Q7-01 8 56436193 56436193 C T XKR4 Missense_Mutation p.R454C 0.28 deleterious(0.01) probably_damaging(0.991) TCGA-VR-A8Q7-01 8 6615051 6615051 C G AGPAT5 3'UTR 0.22 TCGA-VR-A8Q7-01 8 82354544 82354544 C A PMP2 3'UTR 0.19 TCGA-VR-A8Q7-01 9 100085112 100085112 G A CCDC180 Intron 0.42 TCGA-VR-A8Q7-01 9 34397641 34397641 T C C9orf24 5'UTR 0.35 TCGA-VR-A8Q7-01 X 115304321 115304321 T C AGTR2 Missense_Mutation p.L263P 0.28 deleterious(0.01) probably_damaging(0.99) TCGA-VR-A8Q7-01 X 12734448 12734448 A G FRMPD4 Missense_Mutation p.S624G 0.64 tolerated_low_confidence(0.26) benign(0) TCGA-VR-A8Q7-01 X 153715758 153715758 A C SLC10A3 3'UTR 0.32 TCGA-VR-A8Q7-01 X 18954191 18954191 G C PHKA2 Nonsense_Mutation p.Y373* 0.50 TCGA-VR-AA4D-01 10 119302138 119302138 C - EMX2 5'UTR 0.19 TCGA-VR-AA4D-01 10 129881396 129881396 G T PTPRE 3'UTR 0.27 TCGA-VR-AA4D-01 10 72015106 72015106 C T NPFFR1 Silent p.A300A 0.50 TCGA-VR-AA4D-01 11 129788514 129788514 G A PRDM10 Missense_Mutation p.R716C 0.24 deleterious(0) probably_damaging(0.997) TCGA-VR-AA4D-01 11 59574020 59574020 C T MRPL16 Missense_Mutation p.A186T 0.18 tolerated(0.13) benign(0.004) TCGA-VR-AA4D-01 11 61286011 61286011 G A SYT7 3'UTR 0.27 TCGA-VR-AA4D-01 11 66006623 66006623 C T PACS1 Silent p.D768D 0.29 TCGA-VR-AA4D-01 11 6898665 6898665 C A OR10A4 Missense_Mutation p.P263T 0.38 deleterious(0.01) possibly_damaging(0.794) TCGA-VR-AA4D-01 11 71718357 71718357 G A NUMA1 Missense_Mutation p.R1781W 0.29 benign(0.039) TCGA-VR-AA4D-01 11 73881821 73881821 C A C2CD3 Missense_Mutation p.G6V 0.22 tolerated(0.44) unknown(0) TCGA-VR-AA4D-01 11 92568181 92568181 C A FAT3 Silent p.P3339P 0.27 TCGA-VR-AA4D-01 12 104111582 104111582 A G STAB2 Missense_Mutation p.D1549G 0.28 deleterious(0) probably_damaging(1) TCGA-VR-AA4D-01 12 112690234 112690234 G T HECTD4 Silent p.R1036R 0.22 TCGA-VR-AA4D-01 12 120802518 120802518 T A MSI1 Missense_Mutation p.K103M 0.09 deleterious(0.01) probably_damaging(0.984) TCGA-VR-AA4D-01 12 4600369 4600369 G A C12orf4 Missense_Mutation p.A491V 0.17 deleterious(0.04) probably_damaging(0.974) TCGA-VR-AA4D-01 12 48175440 48175440 G A SLC48A1 3'UTR 0.11 TCGA-VR-AA4D-01 12 54447779 54447801 CAAAATAGCTACATCCCTGAACA - HOXC4 Frame_Shift_Del p.N26Sfs*28 0.23 TCGA-VR-AA4D-01 12 57456971 57456971 G A TMEM194A Missense_Mutation p.A304V 0.50 deleterious(0.03) benign(0.383) TCGA-VR-AA4D-01 12 58335569 58335569 C T XRCC6BP1 Missense_Mutation p.P29S 0.28 deleterious(0.05) benign(0.079) TCGA-VR-AA4D-01 12 69245072 69245072 A C CPM 3'UTR 0.37 TCGA-VR-AA4D-01 12 99139573 99139573 G A ANKS1B Intron 0.12 TCGA-VR-AA4D-01 13 47408570 47408570 T G HTR2A 3'UTR 0.88 TCGA-VR-AA4D-01 13 51854620 51854620 G A FAM124A Missense_Mutation p.G326D 0.24 tolerated(0.38) benign(0.117) TCGA-VR-AA4D-01 13 77739439 77739439 A G MYCBP2 Missense_Mutation p.I2105T 0.25 benign(0.058) TCGA-VR-AA4D-01 14 24841738 24841738 C T NFATC4 Missense_Mutation p.R493W 0.38 deleterious(0) probably_damaging(1) TCGA-VR-AA4D-01 14 42373630 42373630 A T LRFN5 3'UTR 0.22 TCGA-VR-AA4D-01 15 24927743 24927743 T - NPAP1 3'UTR 0.12 TCGA-VR-AA4D-01 15 26866507 26866507 G A GABRB3 Missense_Mutation p.R139C 0.24 deleterious(0) probably_damaging(0.957) TCGA-VR-AA4D-01 15 44184264 44184264 C T FRMD5 Missense_Mutation p.V215M 0.56 tolerated(0.22) probably_damaging(0.99) TCGA-VR-AA4D-01 15 79749285 79749285 A C KIAA1024 Missense_Mutation p.N266H 0.16 deleterious(0.01) possibly_damaging(0.681) TCGA-VR-AA4D-01 16 31075398 31075398 C T ZNF668 Missense_Mutation p.R151H 0.15 deleterious(0.01) probably_damaging(0.91) TCGA-VR-AA4D-01 16 3299561 3299561 C T MEFV Missense_Mutation p.R377H 0.30 tolerated(0.06) benign(0.409) TCGA-VR-AA4D-01 16 74455135 74455136 - C CLEC18B Frame_Shift_Ins p.H12Afs*57 0.22 TCGA-VR-AA4D-01 16 89762095 89762095 C A CDK10 Missense_Mutation p.P360T 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VR-AA4D-01 16 89980539 89980539 G A MC1R 5'Flank 0.53 TCGA-VR-AA4D-01 16 9923301 9923301 C T GRIN2A Silent p.V662V 0.23 TCGA-VR-AA4D-01 17 16329551 16329551 C A TRPV2 Missense_Mutation p.L355M 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-VR-AA4D-01 17 18417905 18417905 C T CTD-2303H24.2 Intron 0.15 TCGA-VR-AA4D-01 17 38561127 38561127 G A TOP2A Silent p.S654S 0.03 TCGA-VR-AA4D-01 17 39182940 39182940 C T KRTAP1-5 Silent p.P156P 0.04 TCGA-VR-AA4D-01 17 40491335 40491335 C A STAT3 Silent p.V155V 0.21 TCGA-VR-AA4D-01 17 45608675 45608675 G T NPEPPS Silent p.L3L 0.15 TCGA-VR-AA4D-01 17 49270349 49270349 C G MBTD1 Missense_Mutation p.G495A 0.21 deleterious(0.01) benign(0.142) TCGA-VR-AA4D-01 17 60742136 60742136 G C MRC2 Missense_Mutation p.A116P 0.11 tolerated(0.36) benign(0.001) TCGA-VR-AA4D-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.62 deleterious(0) probably_damaging(1) TCGA-VR-AA4D-01 18 44036483 44036483 C T RNF165 Missense_Mutation p.R309C 0.41 deleterious(0) probably_damaging(1) TCGA-VR-AA4D-01 19 12267465 12267465 G A ZNF625 5'UTR 0.36 TCGA-VR-AA4D-01 19 12768292 12768292 G A MAN2B1 Missense_Mutation p.R463C 0.24 deleterious(0) probably_damaging(0.93) TCGA-VR-AA4D-01 19 2097670 2097670 C T IZUMO4 Intron 0.29 TCGA-VR-AA4D-01 19 31768189 31768189 G C TSHZ3 Missense_Mutation p.S837W 0.36 deleterious(0) probably_damaging(1) TCGA-VR-AA4D-01 19 464039 464039 C A ODF3L2 Silent p.L225L 0.33 TCGA-VR-AA4D-01 19 4839272 4839273 GT - PLIN3 Frame_Shift_Del p.P413Cfs*14 0.34 TCGA-VR-AA4D-01 19 50861893 50861893 C T NAPSA Missense_Mutation p.A394T 0.49 tolerated(0.07) possibly_damaging(0.71) TCGA-VR-AA4D-01 19 51532672 51532672 T A KLK12 Missense_Mutation p.Q211H 0.27 tolerated(0.11) probably_damaging(0.999) TCGA-VR-AA4D-01 19 52249969 52249969 G A FPR1 Silent p.F93F 0.45 TCGA-VR-AA4D-01 19 52497000 52497000 G T ZNF615 Silent p.L454L 0.30 TCGA-VR-AA4D-01 1 110765691 110765691 C T KCNC4 Missense_Mutation p.R262C 0.31 tolerated(0.16) benign(0.431) TCGA-VR-AA4D-01 1 118539321 118539321 A T SPAG17 Missense_Mutation p.L1608M 0.53 tolerated(0.23) benign(0.045) TCGA-VR-AA4D-01 1 142803247 142803247 T C RP11-423O2.5 RNA 0.04 TCGA-VR-AA4D-01 1 151016187 151016187 C T BNIPL Missense_Mutation p.R279C 0.24 deleterious(0.01) benign(0.04) TCGA-VR-AA4D-01 1 151139677 151139677 G A SCNM1 Missense_Mutation p.E98K 0.19 tolerated(0.1) benign(0.009) TCGA-VR-AA4D-01 1 154522842 154522842 G A UBE2Q1 3'UTR 0.22 TCGA-VR-AA4D-01 1 156646866 156646866 C T NES Missense_Mutation p.R64Q 0.29 deleterious(0.01) probably_damaging(1) TCGA-VR-AA4D-01 1 157545291 157545291 C T FCRL4 3'UTR 0.30 TCGA-VR-AA4D-01 1 158435970 158435970 T C OR10K1 Silent p.L207L 0.18 TCGA-VR-AA4D-01 1 158725236 158725236 C T OR6K6 Missense_Mutation p.P211S 0.28 deleterious(0.02) probably_damaging(0.971) TCGA-VR-AA4D-01 1 168269680 168269680 C T TBX19 Missense_Mutation p.P229L 0.21 tolerated(0.48) benign(0.007) TCGA-VR-AA4D-01 1 175372433 175372433 C T TNR Silent p.K273K 0.31 TCGA-VR-AA4D-01 1 183077522 183077522 G T LAMC1 Missense_Mutation p.D279Y 0.15 deleterious(0) probably_damaging(0.998) TCGA-VR-AA4D-01 1 190067356 190067356 G T BRINP3 Nonsense_Mutation p.S698* 0.21 TCGA-VR-AA4D-01 1 203134554 203134554 C T ADORA1 Silent p.C169C 0.44 TCGA-VR-AA4D-01 1 234744487 234744487 G A IRF2BP2 Missense_Mutation p.R252C 0.70 deleterious(0) possibly_damaging(0.876) TCGA-VR-AA4D-01 1 235335957 235335957 G A ARID4B Missense_Mutation p.R1263C 0.07 deleterious(0) probably_damaging(0.997) TCGA-VR-AA4D-01 1 24447325 24447325 G T IL22RA1 Silent p.G565G 0.32 TCGA-VR-AA4D-01 1 32374315 32374315 A C PTP4A2 3'UTR 0.15 TCGA-VR-AA4D-01 1 34080136 34080136 C A CSMD2 Missense_Mutation p.C1994F 0.49 deleterious(0) probably_damaging(0.994) TCGA-VR-AA4D-01 1 3413291 3413291 C T MEGF6 Missense_Mutation p.G1224R 0.68 deleterious(0.03) benign(0.176) TCGA-VR-AA4D-01 1 45272226 45272226 G A TCTEX1D4 Nonsense_Mutation p.R39* 0.30 TCGA-VR-AA4D-01 1 94017818 94017818 G A FNBP1L Intron 0.31 TCGA-VR-AA4D-01 20 10287918 10287918 A T SNAP25 3'UTR 0.18 TCGA-VR-AA4D-01 20 21377967 21377967 T C NKX2-4 Missense_Mutation p.Y24C 0.35 deleterious(0) probably_damaging(0.998) TCGA-VR-AA4D-01 20 31026371 31026371 C T ASXL1 3'UTR 0.33 TCGA-VR-AA4D-01 20 39980508 39980508 G T LPIN3 Missense_Mutation p.D384Y 0.36 deleterious(0) probably_damaging(0.977) TCGA-VR-AA4D-01 20 5454483 5454483 G A RP5-828H9.1 RNA 0.33 TCGA-VR-AA4D-01 20 9519485 9519485 G A PAK7 3'UTR 0.22 TCGA-VR-AA4D-01 21 46000435 46000435 G A KRTAP10-5 Silent p.S7S 0.28 TCGA-VR-AA4D-01 22 35948675 35948675 C A RASD2 3'UTR 0.27 TCGA-VR-AA4D-01 22 39482536 39482536 G A APOBEC3G Missense_Mutation p.E330K 0.07 tolerated(0.48) benign(0.038) TCGA-VR-AA4D-01 22 46345866 46345866 G A WNT7B Missense_Mutation p.R78C 0.28 deleterious(0) probably_damaging(0.992) TCGA-VR-AA4D-01 2 128568670 128568670 A G WDR33 5'UTR 0.16 TCGA-VR-AA4D-01 2 144764923 144764923 T C GTDC1 Missense_Mutation p.E234G 0.17 tolerated_low_confidence(0.1) benign(0.003) TCGA-VR-AA4D-01 2 158617468 158617468 G A ACVR1 Silent p.F396F 0.17 TCGA-VR-AA4D-01 2 167084183 167084183 A G SCN9A Silent p.V1408V 0.50 TCGA-VR-AA4D-01 2 170592353 170592353 A T KLHL23 Missense_Mutation p.I277L 0.33 deleterious(0.02) benign(0.023) TCGA-VR-AA4D-01 2 185803171 185803171 T C ZNF804A Silent p.T1016T 0.38 TCGA-VR-AA4D-01 2 201473840 201473840 C T AOX1 Silent p.S347S 0.36 TCGA-VR-AA4D-01 2 204240780 204240780 G A ABI2 Intron 0.09 TCGA-VR-AA4D-01 2 218700896 218700896 C A TNS1 Missense_Mutation p.A891S 0.24 tolerated(0.27) benign(0.01) TCGA-VR-AA4D-01 2 219081926 219081926 A G ARPC2 5'Flank 0.20 TCGA-VR-AA4D-01 2 234638231 234638231 C T UGT1A3 Silent p.P153P 0.21 TCGA-VR-AA4D-01 2 240969167 240969167 C T OR6B2 Missense_Mutation p.R227H 0.15 tolerated(0.45) benign(0.01) TCGA-VR-AA4D-01 2 54091624 54091624 T C PSME4 3'UTR 0.21 TCGA-VR-AA4D-01 2 5837601 5837601 A C SOX11 3'UTR 0.16 TCGA-VR-AA4D-01 2 88751690 88751690 G A FOXI3 RNA 0.13 TCGA-VR-AA4D-01 3 12858877 12858877 C T CAND2 Missense_Mutation p.P816S 0.33 tolerated(0.14) probably_damaging(0.999) TCGA-VR-AA4D-01 3 13679592 13679592 G A FBLN2 3'UTR 0.33 TCGA-VR-AA4D-01 3 20136842 20136842 C A KAT2B Missense_Mutation p.T173N 0.24 tolerated(0.13) benign(0.038) TCGA-VR-AA4D-01 3 38519461 38519461 G C ACVR2B Missense_Mutation p.V124L 0.25 tolerated(0.31) benign(0.018) TCGA-VR-AA4D-01 3 45943064 45943064 G A CCR9 Missense_Mutation p.V262I 0.28 tolerated(0.07) possibly_damaging(0.532) TCGA-VR-AA4D-01 3 49713608 49713608 G A APEH Missense_Mutation p.D188N 0.52 tolerated(0.08) benign(0.126) TCGA-VR-AA4D-01 3 73453349 73453349 C T PDZRN3 Silent p.K372K 0.37 TCGA-VR-AA4D-01 3 78689016 78689016 G A ROBO1 Missense_Mutation p.A972V 0.18 tolerated(0.36) benign(0.015) TCGA-VR-AA4D-01 4 100273840 100273840 C - ADH1C 5'UTR 0.11 TCGA-VR-AA4D-01 4 134112332 134112332 A C PCDH10 3'UTR 0.30 TCGA-VR-AA4D-01 4 144264666 144264666 C T GAB1 Intron 0.26 TCGA-VR-AA4D-01 4 154279649 154279649 C T MND1 Missense_Mutation p.L51F 0.56 deleterious(0) probably_damaging(0.961) TCGA-VR-AA4D-01 4 156784805 156784805 G - ASIC5 Frame_Shift_Del p.H48Mfs*29 0.24 TCGA-VR-AA4D-01 4 69094484 69094484 C T TMPRSS11B Missense_Mutation p.M355I 0.38 deleterious(0.05) possibly_damaging(0.7) TCGA-VR-AA4D-01 4 71062422 71062422 G A ODAM Missense_Mutation p.R22H 0.21 tolerated(0.34) benign(0.076) TCGA-VR-AA4D-01 4 94145855 94145855 A C GRID2 Missense_Mutation p.S352R 0.32 deleterious(0.01) possibly_damaging(0.604) TCGA-VR-AA4D-01 5 114547734 114547734 A G PGGT1B 3'UTR 0.08 TCGA-VR-AA4D-01 5 140236457 140236457 A T PCDHA10 Missense_Mutation p.E275V 0.26 deleterious_low_confidence(0.05) benign(0.151) TCGA-VR-AA4D-01 5 140569032 140574266 5:140569032-140574266 - PCDHB10 large deletion 0.41 TCGA-VR-AA4D-01 5 140574266 140574267 - GCTGT PCDHB10 Frame_Shift_Ins p.R717Cfs*27 0.65 TCGA-VR-AA4D-01 5 140755355 140755355 A T PCDHGA6 Missense_Mutation p.T569S 0.72 deleterious_low_confidence(0.01) benign(0.049) TCGA-VR-AA4D-01 5 149459879 149459879 C T CSF1R Missense_Mutation p.V110M 0.21 tolerated(0.08) benign(0.394) TCGA-VR-AA4D-01 5 150029680 150029680 C T SYNPO Missense_Mutation p.R859W 0.16 deleterious(0) probably_damaging(1) TCGA-VR-AA4D-01 5 153855138 153855138 T C HAND1 3'UTR 0.14 TCGA-VR-AA4D-01 5 67522599 67522600 - AAT PIK3R1 In_Frame_Ins p.N33dup 0.30 TCGA-VR-AA4D-01 6 148792635 148792635 A C SASH1 Silent p.S170S 0.34 TCGA-VR-AA4D-01 6 160523575 160523575 C T IGF2R Silent p.P2289P 0.40 TCGA-VR-AA4D-01 6 167728728 167728728 C T UNC93A Missense_Mutation p.R388C 0.26 deleterious(0) possibly_damaging(0.71) TCGA-VR-AA4D-01 6 26368912 26368912 A C BTN3A2 Missense_Mutation p.S69R 0.14 tolerated(1) benign(0.013) TCGA-VR-AA4D-01 6 26406256 26406256 A C BTN3A1 Missense_Mutation p.S69R 0.52 tolerated(1) benign(0.009) TCGA-VR-AA4D-01 7 110762973 110762973 G A LRRN3 Missense_Mutation p.E49K 0.08 deleterious(0) probably_damaging(0.938) TCGA-VR-AA4D-01 7 44155474 44155474 T A POLD2 Silent p.G346G 0.45 TCGA-VR-AA4D-01 7 49951784 49951784 G A VWC2 3'UTR 0.44 TCGA-VR-AA4D-01 7 92762790 92762791 - T SAMD9L Frame_Shift_Ins p.T832Nfs*16 0.24 TCGA-VR-AA4D-01 7 97920515 97920515 G C BRI3 Missense_Mutation p.R113T 0.47 deleterious(0) benign(0.112) TCGA-VR-AA4D-01 8 113256779 113256779 T G CSMD3 Missense_Mutation p.T3416P 0.14 deleterious(0) possibly_damaging(0.533) TCGA-VR-AA4D-01 8 124261088 124261088 T C ZHX1 3'UTR 0.53 TCGA-VR-AA4D-01 8 125716370 125716370 C T MTSS1 Splice_Site p.X45_splice 0.55 TCGA-VR-AA4D-01 8 13947936 13947936 G A SGCZ 3'UTR 0.22 TCGA-VR-AA4D-01 8 89339336 89339336 C G MMP16 Missense_Mutation p.V34L 0.26 tolerated(0.43) benign(0) TCGA-VR-AA4D-01 8 94792886 94792886 C T TMEM67 Silent p.Y260Y 0.32 TCGA-VR-AA4D-01 9 130155584 130155584 T C GARNL3 3'UTR 0.06 TCGA-VR-AA4D-01 9 130704612 130704612 G A FAM102A 3'UTR 0.12 TCGA-VR-AA4D-01 9 21974727 21974744 CCTCCAGCAGCGCCCGCA - CDKN2A In_Frame_Del p.V28_E33del 0.52 TCGA-VR-AA4D-01 9 73225653 73225653 G A TRPM3 Nonsense_Mutation p.R835* 0.17 TCGA-VR-AA4D-01 9 84608742 84608742 A C SPATA31D1 Missense_Mutation p.Q1119H 0.24 deleterious(0.01) probably_damaging(0.986) TCGA-VR-AA4D-01 X 129505535 129505535 C T SLC25A14 Intron 0.10 TCGA-VR-AA4D-01 X 155005253 155005253 T C SPRY3 3'UTR 0.77 TCGA-VR-AA4D-01 X 1743260 1743260 C T ASMT Missense_Mutation p.R115W 0.32 tolerated(0.18) possibly_damaging(0.764) TCGA-VR-AA4D-01 X 38268008 38268008 A T OTC Missense_Mutation p.D226V 0.39 deleterious(0.01) possibly_damaging(0.461) TCGA-VR-AA4G-01 10 134752203 134752203 C T TTC40 Silent p.P142P 0.33 TCGA-VR-AA4G-01 10 24835385 24835385 A G KIAA1217 3'UTR 0.47 TCGA-VR-AA4G-01 10 6139040 6139040 C T RBM17 Silent p.Y4Y 0.40 TCGA-VR-AA4G-01 10 64219517 64219517 C T ZNF365 Silent p.G314G 0.17 TCGA-VR-AA4G-01 10 93719887 93719887 A G BTAF1 Missense_Mutation p.I413M 0.37 tolerated(0.06) possibly_damaging(0.872) TCGA-VR-AA4G-01 11 111965683 111965683 T C SDHD Missense_Mutation p.W157R 0.09 deleterious(0) probably_damaging(0.994) TCGA-VR-AA4G-01 11 56409727 56409727 G C OR5AP2 Silent p.T63T 0.19 TCGA-VR-AA4G-01 11 61091537 61091537 G A DDB1 Missense_Mutation p.R279W 0.23 tolerated(0.06) probably_damaging(0.995) TCGA-VR-AA4G-01 12 120584968 120584968 G A GCN1L1 Missense_Mutation p.S1612F 0.28 probably_damaging(0.998) TCGA-VR-AA4G-01 12 123254440 123254440 A T DENR 3'UTR 0.36 TCGA-VR-AA4G-01 12 34175557 34175558 - T ALG10 Frame_Shift_Ins p.S10Lfs*41 0.20 TCGA-VR-AA4G-01 12 54795803 54795803 G A ITGA5 Silent p.P736P 0.20 TCGA-VR-AA4G-01 12 76746994 76746994 T A OSBPL8 3'UTR 0.33 TCGA-VR-AA4G-01 13 72013129 72013129 G T DACH1 3'UTR 0.52 TCGA-VR-AA4G-01 15 51773127 51773127 G T DMXL2 Missense_Mutation p.A2059D 0.33 deleterious(0) probably_damaging(1) TCGA-VR-AA4G-01 15 59397386 59397386 G C CCNB2 5'UTR 0.13 TCGA-VR-AA4G-01 16 19451843 19451843 G A TMC5 Silent p.P161P 0.29 TCGA-VR-AA4G-01 16 27373610 27373610 T G IL4R Missense_Mutation p.F313V 0.35 deleterious(0.01) benign(0.114) TCGA-VR-AA4G-01 16 46650016 46650016 T C SHCBP1 Silent p.E146E 0.18 TCGA-VR-AA4G-01 16 72094632 72094632 C T HP Missense_Mutation p.A355V 0.23 deleterious(0) probably_damaging(0.997) TCGA-VR-AA4G-01 16 733202 733202 C T JMJD8 Missense_Mutation p.G203R 0.19 deleterious(0) probably_damaging(0.999) TCGA-VR-AA4G-01 17 18862953 18862953 G T SLC5A10 Missense_Mutation p.V109L 0.19 tolerated(0.28) benign(0.082) TCGA-VR-AA4G-01 17 27020751 27020751 A T SUPT6H Missense_Mutation p.Q1224L 0.13 deleterious(0) possibly_damaging(0.644) TCGA-VR-AA4G-01 17 37922218 37922218 T C IKZF3 Missense_Mutation p.Y452C 0.39 deleterious(0) possibly_damaging(0.823) TCGA-VR-AA4G-01 17 7578469 7578469 C - TP53 Frame_Shift_Del p.G154Afs*16 0.31 TCGA-VR-AA4G-01 17 7579406 7579406 G T TP53 Nonsense_Mutation p.S94* 0.18 TCGA-VR-AA4G-01 18 18547850 18547850 T C ROCK1 Missense_Mutation p.R1019G 0.28 tolerated(0.54) benign(0.003) TCGA-VR-AA4G-01 18 60242142 60242142 C T ZCCHC2 Missense_Mutation p.P943L 0.19 deleterious(0.01) benign(0) TCGA-VR-AA4G-01 19 31048152 31048152 G C ZNF536 3'UTR 0.07 TCGA-VR-AA4G-01 19 36033823 36033823 C T GAPDHS Intron 0.19 TCGA-VR-AA4G-01 19 40947446 40947446 C G SERTAD3 Missense_Mutation p.W181S 0.21 tolerated(0.09) probably_damaging(0.991) TCGA-VR-AA4G-01 19 49573965 49573965 C T KCNA7 Missense_Mutation p.M242I 0.26 deleterious(0.04) probably_damaging(0.987) TCGA-VR-AA4G-01 19 581392 581392 G C BSG Silent p.L290L 0.07 TCGA-VR-AA4G-01 19 9018487 9018487 G A MUC16 Missense_Mutation p.R12563C 0.07 probably_damaging(0.923) TCGA-VR-AA4G-01 19 9434927 9434927 C T ZNF559 5'Flank 0.23 TCGA-VR-AA4G-01 1 120454894 120454894 T C NOTCH2 3'UTR 0.19 TCGA-VR-AA4G-01 1 158651381 158651381 C T SPTA1 Missense_Mutation p.R156Q 0.22 tolerated(1) benign(0.006) TCGA-VR-AA4G-01 1 178414791 178414791 G A RASAL2 Missense_Mutation p.A541T 0.30 tolerated(0.33) probably_damaging(0.999) TCGA-VR-AA4G-01 1 2237626 2237626 G A SKI Silent p.R645R 0.10 TCGA-VR-AA4G-01 1 228527712 228527712 G T OBSCN Missense_Mutation p.Q6732H 0.28 probably_damaging(0.953) TCGA-VR-AA4G-01 1 43825769 43825770 - T CDC20 Splice_Site p.X186_splice 0.21 TCGA-VR-AA4G-01 1 44596234 44596234 C T KLF17 Missense_Mutation p.R326C 0.22 deleterious(0.03) benign(0.247) TCGA-VR-AA4G-01 1 76397722 76397722 A G ASB17 Silent p.F85F 0.32 TCGA-VR-AA4G-01 20 20258012 20258012 C A C20orf26 Silent p.I902I 0.32 TCGA-VR-AA4G-01 20 26188852 26188852 C A MIR663A Intron 0.31 TCGA-VR-AA4G-01 20 2844831 2844831 G A VPS16 Missense_Mutation p.E540K 0.26 deleterious(0.01) possibly_damaging(0.798) TCGA-VR-AA4G-01 20 56284579 56284579 G A PMEPA1 Silent p.V20V 0.25 TCGA-VR-AA4G-01 21 19635169 19635169 G A CHODL Silent p.L232L 0.20 TCGA-VR-AA4G-01 21 22838967 22838967 T C NCAM2 Silent p.Y565Y 0.37 TCGA-VR-AA4G-01 21 34822035 34822035 C T TMEM50B 3'UTR 0.36 TCGA-VR-AA4G-01 22 30811777 30811777 A G SEC14L2 Missense_Mutation p.I232V 0.45 tolerated(0.08) benign(0.003) TCGA-VR-AA4G-01 2 103095550 103095550 C - SLC9A4 Frame_Shift_Del p.L171Wfs*13 0.14 TCGA-VR-AA4G-01 2 179355543 179355543 T C PLEKHA3 Splice_Site p.X105_splice 0.24 TCGA-VR-AA4G-01 2 180843003 180843003 T A CWC22 Silent p.S165S 0.18 TCGA-VR-AA4G-01 2 217364062 217364062 A T RPL37A Missense_Mutation p.M25L 0.20 tolerated(0.06) benign(0.012) TCGA-VR-AA4G-01 2 227871082 227871082 G A COL4A4 3'UTR 0.29 TCGA-VR-AA4G-01 2 238259828 238259828 C T COL6A3 Missense_Mutation p.G2254E 0.40 unknown(0) TCGA-VR-AA4G-01 2 27276797 27276797 C A AGBL5 Missense_Mutation p.H141N 0.31 deleterious(0.01) benign(0.152) TCGA-VR-AA4G-01 2 50148604 50148604 G C NRXN1 3'UTR 0.25 TCGA-VR-AA4G-01 2 73718079 73718079 A C ALMS1 Missense_Mutation p.N2997T 0.22 benign(0.069) TCGA-VR-AA4G-01 2 9628294 9628294 T A IAH1 Missense_Mutation p.S195T 0.34 deleterious(0.04) possibly_damaging(0.612) TCGA-VR-AA4G-01 3 140397293 140397293 C T TRIM42 Silent p.P74P 0.15 TCGA-VR-AA4G-01 3 148460393 148460393 T G AGTR1 3'UTR 0.22 TCGA-VR-AA4G-01 3 180652996 180652996 A G FXR1 Missense_Mutation p.I59V 0.39 tolerated(0.08) benign(0.342) TCGA-VR-AA4G-01 3 189614087 189614087 C G TP63 3'UTR 0.10 TCGA-VR-AA4G-01 3 195251628 195251628 G C PPP1R2 Missense_Mutation p.I99M 0.51 tolerated(0.25) benign(0.016) TCGA-VR-AA4G-01 3 195456532 195456532 T G MUC20 Silent p.G661G 0.14 TCGA-VR-AA4G-01 3 30691784 30691784 A G TGFBR2 Missense_Mutation p.T121A 0.41 tolerated(0.07) possibly_damaging(0.512) TCGA-VR-AA4G-01 3 41278166 41278166 C T CTNNB1 Missense_Mutation p.S681F 0.29 deleterious(0) possibly_damaging(0.709) TCGA-VR-AA4G-01 3 97356914 97356914 T G EPHA6 Silent p.A924A 0.30 TCGA-VR-AA4G-01 4 154258074 154258074 A T TRIM2 3'UTR 0.44 TCGA-VR-AA4G-01 4 3257920 3257920 G T MSANTD1 3'UTR 0.36 TCGA-VR-AA4G-01 4 5800490 5800490 A T EVC Missense_Mutation p.S759C 0.36 deleterious(0.01) probably_damaging(0.976) TCGA-VR-AA4G-01 5 156191205 156191205 A G SGCD 3'Flank 0.33 TCGA-VR-AA4G-01 5 176869147 176869147 G A GRK6 3'UTR 0.21 TCGA-VR-AA4G-01 5 65476614 65476614 A G SREK1 3'UTR 0.59 TCGA-VR-AA4G-01 6 123376961 123376961 A C CLVS2 Missense_Mutation p.H229P 0.22 deleterious(0) probably_damaging(0.988) TCGA-VR-AA4G-01 6 131186736 131186736 C G EPB41L2 Silent p.L923L 0.33 TCGA-VR-AA4G-01 6 18130964 18130964 C G TPMT Missense_Mutation p.E225Q 0.13 tolerated(0.11) benign(0.014) TCGA-VR-AA4G-01 6 33147260 33147260 G A COL11A2 Missense_Mutation p.A398V 0.20 possibly_damaging(0.695) TCGA-VR-AA4G-01 6 35087129 35087129 A G TCP11 Silent p.S398S 0.28 TCGA-VR-AA4G-01 6 39693181 39693181 C T KIF6 5'UTR 0.15 TCGA-VR-AA4G-01 6 56489969 56489969 G C DST Missense_Mutation p.L1069V 0.18 benign(0.001) TCGA-VR-AA4G-01 7 112126404 112126404 C T LSMEM1 Intron 0.16 TCGA-VR-AA4G-01 7 30477261 30477261 T A NOD1 Missense_Mutation p.N822I 0.31 deleterious(0) probably_damaging(1) TCGA-VR-AA4G-01 7 6370735 6370735 C A FAM220A Missense_Mutation p.Q17H 0.23 tolerated(0.14) benign(0.089) TCGA-VR-AA4G-01 7 64168548 64168548 C A ZNF107 Missense_Mutation p.N622K 0.24 tolerated(0.39) benign(0.101) TCGA-VR-AA4G-01 7 82583352 82583352 T C PCLO Missense_Mutation p.K2306R 0.19 unknown(0) TCGA-VR-AA4G-01 8 101931859 101931859 T C YWHAZ 3'UTR 0.26 TCGA-VR-AA4G-01 8 55542624 55542624 T C RP1 Missense_Mutation p.I2061T 0.28 deleterious(0.01) benign(0.231) TCGA-VR-AA4G-01 8 67342902 67342902 A G RRS1 3'UTR 0.20 TCGA-VR-AA4G-01 9 100692787 100692787 A G HEMGN Missense_Mutation p.L297P 0.05 deleterious(0.05) benign(0.013) TCGA-VR-AA4G-01 9 123173662 123173662 T C CDK5RAP2 Missense_Mutation p.N1463S 0.71 tolerated(0.11) possibly_damaging(0.899) TCGA-VR-AA4G-01 9 123580063 123580070 TCTGACAT - PSMD5 3'UTR 0.55 TCGA-VR-AA4G-01 9 32543771 32543771 T A TOPORS Missense_Mutation p.Q251L 0.55 deleterious(0.02) possibly_damaging(0.776) TCGA-VR-AA4G-01 9 35106621 35106621 G A FAM214B Missense_Mutation p.R325W 0.44 tolerated(0.11) benign(0) TCGA-VR-AA4G-01 X 153052328 153052328 G A IDH3G Silent p.C284C 0.26 TCGA-VR-AA4G-01 X 2656238 2656238 C A CD99 Intron 0.32 TCGA-VR-AA4G-01 X 50381301 50381301 C T SHROOM4 Missense_Mutation p.A93T 0.11 tolerated(0.52) benign(0.004) TCGA-VR-AA4G-01 X 51636761 51636761 C T MAGED1 5'UTR 0.05 TCGA-VR-AA4G-01 X 53114892 53114892 A G TSPYL2 Missense_Mutation p.I440V 0.34 deleterious_low_confidence(0.03) benign(0.122) TCGA-VR-AA4G-01 X 91873845 91873845 C T PCDH11X Missense_Mutation p.S1317L 0.32 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-VR-AA7B-01 10 104574488 104574488 G C WBP1L 3'UTR 0.38 TCGA-VR-AA7B-01 10 11505038 11505038 G A USP6NL Missense_Mutation p.P647L 0.24 deleterious_low_confidence(0.04) probably_damaging(1) TCGA-VR-AA7B-01 10 119764789 119764789 G C RAB11FIP2 3'UTR 0.22 TCGA-VR-AA7B-01 10 121436865 121436865 G C BAG3 3'UTR 0.33 TCGA-VR-AA7B-01 10 16878337 16878337 C T CUBN Silent p.S3359S 0.06 TCGA-VR-AA7B-01 10 22015215 22015215 C T MLLT10 Missense_Mutation p.H641Y 0.19 deleterious(0) benign(0.114) TCGA-VR-AA7B-01 10 28821727 28821727 C G WAC 5'Flank 0.26 TCGA-VR-AA7B-01 10 7786241 7786241 G C ITIH2 Missense_Mutation p.Q802H 0.36 deleterious(0.01) benign(0.013) TCGA-VR-AA7B-01 10 98281716 98281716 C T TM9SF3 3'UTR 0.31 TCGA-VR-AA7B-01 11 116652907 116652907 C G ZNF259 Missense_Mutation p.E382D 0.33 tolerated(0.23) benign(0.005) TCGA-VR-AA7B-01 11 119170428 119170428 G C CBL Missense_Mutation p.E886D 0.19 tolerated_low_confidence(0.34) benign(0.057) TCGA-VR-AA7B-01 11 134153679 134153679 C T GLB1L3 Silent p.S192S 0.28 TCGA-VR-AA7B-01 11 17565937 17565937 G C USH1C 5'Flank 0.21 TCGA-VR-AA7B-01 11 406070 406070 G C SIGIRR Intron 0.39 TCGA-VR-AA7B-01 11 44089204 44089204 C T ACCS Silent p.F9F 0.25 TCGA-VR-AA7B-01 11 55606363 55606363 G T OR5D16 Missense_Mutation p.G46W 0.32 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7B-01 11 5809409 5809409 A G OR52N1 Missense_Mutation p.I213T 0.32 deleterious(0.01) benign(0.364) TCGA-VR-AA7B-01 11 58275221 58275221 G A OR5B21 Missense_Mutation p.R120C 0.25 deleterious_low_confidence(0.03) possibly_damaging(0.549) TCGA-VR-AA7B-01 11 58384873 58384873 C T ZFP91 Silent p.L469L 0.38 TCGA-VR-AA7B-01 11 58478152 58478152 G C GLYAT Silent p.L133L 0.48 TCGA-VR-AA7B-01 11 5862196 5862196 G T OR52E6 Missense_Mutation p.T311K 0.58 tolerated_low_confidence(1) benign(0) TCGA-VR-AA7B-01 11 65266460 65266460 T A MALAT1 RNA 0.14 TCGA-VR-AA7B-01 11 67186432 67186432 A G CARNS1 Silent p.A190A 0.23 TCGA-VR-AA7B-01 11 67186451 67186451 A C CARNS1 Missense_Mutation p.T197P 0.27 tolerated(0.14) benign(0.192) TCGA-VR-AA7B-01 11 67957421 67957421 C G SUV420H1 Missense_Mutation p.K41N 0.52 deleterious(0) possibly_damaging(0.756) TCGA-VR-AA7B-01 11 6891244 6891244 C T OR10A2 Nonsense_Mutation p.Q87* 0.26 TCGA-VR-AA7B-01 11 89222092 89222092 A C NOX4 Intron 0.48 TCGA-VR-AA7B-01 11 93469859 93469859 C G TAF1D Splice_Site p.X231_splice 0.07 TCGA-VR-AA7B-01 12 108618549 108618549 G A WSCD2 Missense_Mutation p.R239K 0.33 tolerated(0.68) benign(0.094) TCGA-VR-AA7B-01 12 11286602 11286602 C T TAS2R30 Missense_Mutation p.R81K 0.24 tolerated(0.1) benign(0.16) TCGA-VR-AA7B-01 12 11546642 11546642 G A PRB2 Nonsense_Mutation p.Q124* 0.08 TCGA-VR-AA7B-01 12 117655876 117655876 C T NOS1 Missense_Mutation p.E1456K 0.22 deleterious(0.02) possibly_damaging(0.698) TCGA-VR-AA7B-01 12 119954500 119954500 G C CCDC60 Missense_Mutation p.R319T 0.13 tolerated(0.1) benign(0.015) TCGA-VR-AA7B-01 12 123661309 123661309 G A MPHOSPH9 Silent p.V642V 0.25 TCGA-VR-AA7B-01 12 129431943 129431943 G A GLT1D1 Silent p.K160K 0.32 TCGA-VR-AA7B-01 12 16109917 16109917 A T DERA Missense_Mutation p.R27W 0.20 deleterious(0) possibly_damaging(0.838) TCGA-VR-AA7B-01 12 247635 247635 C T IQSEC3 Missense_Mutation p.A369V 0.50 deleterious(0.03) probably_damaging(0.965) TCGA-VR-AA7B-01 12 32772733 32772733 G A FGD4 Silent p.E480E 0.19 TCGA-VR-AA7B-01 12 39703442 39703442 G C KIF21A Missense_Mutation p.S1408C 0.53 deleterious(0) probably_damaging(0.928) TCGA-VR-AA7B-01 12 39760156 39760156 C A KIF21A Missense_Mutation p.G300V 0.35 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 12 40689290 40689290 G A LRRK2 Silent p.E980E 0.52 TCGA-VR-AA7B-01 12 49935472 49935472 G A KCNH3 Missense_Mutation p.A124T 0.08 deleterious(0) possibly_damaging(0.739) TCGA-VR-AA7B-01 12 53434012 53434013 - TA EIF4B 3'UTR 0.22 TCGA-VR-AA7B-01 12 95906601 95906601 A G METAP2 Missense_Mutation p.T365A 0.60 deleterious(0.01) probably_damaging(0.999) TCGA-VR-AA7B-01 13 21353718 21353718 C T XPO4 3'UTR 0.27 TCGA-VR-AA7B-01 13 28622425 28622425 C T FLT3 Missense_Mutation p.D398N 0.17 tolerated(0.49) benign(0) TCGA-VR-AA7B-01 13 40239254 40239254 G A COG6 Missense_Mutation p.D131N 0.35 tolerated(0.06) possibly_damaging(0.805) TCGA-VR-AA7B-01 13 41134632 41134632 C T FOXO1 Missense_Mutation p.M332I 0.16 tolerated(0.31) benign(0.039) TCGA-VR-AA7B-01 13 46538007 46538010 TTTC - ZC3H13 Frame_Shift_Del p.E1548Hfs*6 0.22 TCGA-VR-AA7B-01 13 78338105 78338105 C T SLAIN1 3'Flank 0.32 TCGA-VR-AA7B-01 14 107034864 107034864 A T IGHV5-51 Silent p.P72P 0.20 TCGA-VR-AA7B-01 14 19904313 19904313 C G BMS1P18 RNA 0.13 TCGA-VR-AA7B-01 14 24041061 24041061 C T JPH4 Missense_Mutation p.R407Q 0.29 tolerated(0.11) benign(0.001) TCGA-VR-AA7B-01 14 39763208 39763208 C T CTAGE5 Missense_Mutation p.A172V 0.32 tolerated(0.29) benign(0.027) TCGA-VR-AA7B-01 14 64935503 64935503 A G AKAP5 Missense_Mutation p.K131E 0.14 deleterious(0.01) benign(0.339) TCGA-VR-AA7B-01 14 74083610 74083610 C T ACOT6 5'UTR 0.33 TCGA-VR-AA7B-01 14 74876117 74876117 C A SYNDIG1L Missense_Mutation p.A111S 0.18 tolerated(0.96) benign(0.03) TCGA-VR-AA7B-01 14 90756756 90756756 A T NRDE2 Missense_Mutation p.F680I 0.19 tolerated(0.42) benign(0.002) TCGA-VR-AA7B-01 14 91338321 91338321 G C RPS6KA5 3'UTR 0.27 TCGA-VR-AA7B-01 14 99870582 99870582 C T SETD3 Missense_Mutation p.R386Q 0.24 deleterious(0.01) possibly_damaging(0.581) TCGA-VR-AA7B-01 15 101170231 101170231 C T ASB7 Silent p.F267F 0.20 TCGA-VR-AA7B-01 15 25490689 25490689 A C SNORD115-41 RNA 0.35 TCGA-VR-AA7B-01 15 42985567 42985567 C T STARD9 Missense_Mutation p.H3931Y 0.19 benign(0.386) TCGA-VR-AA7B-01 15 44818183 44818183 A C CTDSPL2 3'UTR 0.19 TCGA-VR-AA7B-01 15 51857295 51857295 C G DMXL2 Missense_Mutation p.W118C 0.20 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7B-01 15 54307496 54307496 C G UNC13C Missense_Mutation p.S799C 0.31 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-VR-AA7B-01 15 54542505 54542505 C T UNC13C Missense_Mutation p.T1104M 0.17 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-VR-AA7B-01 15 54614270 54614270 C G UNC13C Missense_Mutation p.R1468G 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-VR-AA7B-01 15 65855215 65855215 G C PTPLAD1 Missense_Mutation p.L175F 0.23 tolerated(0.18) benign(0.076) TCGA-VR-AA7B-01 15 65856552 65856552 G C PTPLAD1 Splice_Site p.X178_splice 0.13 TCGA-VR-AA7B-01 15 79614407 79614407 C T TMED3 Missense_Mutation p.R169W 0.27 deleterious(0) probably_damaging(0.997) TCGA-VR-AA7B-01 15 84708145 84708145 G T ADAMTSL3 3'UTR 0.41 TCGA-VR-AA7B-01 16 11643500 11643500 C T LITAF Missense_Mutation p.R160H 0.43 deleterious(0) probably_damaging(0.984) TCGA-VR-AA7B-01 16 1961956 1961956 C T HS3ST6 Missense_Mutation p.A191T 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-VR-AA7B-01 16 2086465 2086465 C T SLC9A3R2 Silent p.A185A 0.46 TCGA-VR-AA7B-01 16 20869628 20869628 G A DCUN1D3 3'UTR 0.19 TCGA-VR-AA7B-01 16 2088287 2088287 G A SLC9A3R2 3'UTR 0.43 TCGA-VR-AA7B-01 16 24581206 24581206 G A RBBP6 Silent p.E1065E 0.43 TCGA-VR-AA7B-01 16 30749318 30749318 G T SRCAP Nonsense_Mutation p.E2653* 0.54 TCGA-VR-AA7B-01 16 31151696 31151696 G C PRSS36 Missense_Mutation p.I736M 0.28 tolerated(0.05) benign(0.116) TCGA-VR-AA7B-01 16 4838399 4838399 C A SEPT12 5'UTR 0.29 TCGA-VR-AA7B-01 16 53499461 53499461 C T RBL2 Missense_Mutation p.P604S 0.37 deleterious(0.01) benign(0.41) TCGA-VR-AA7B-01 16 70404231 70404231 G T DDX19A Nonsense_Mutation p.E376* 0.34 TCGA-VR-AA7B-01 16 71019134 71019134 G C HYDIN Missense_Mutation p.S1429C 0.35 probably_damaging(0.987) TCGA-VR-AA7B-01 16 71679091 71679091 G A PHLPP2 3'UTR 0.24 TCGA-VR-AA7B-01 16 75690378 75690378 G C TERF2IP Missense_Mutation p.D357H 0.36 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 16 89349603 89349603 G A ANKRD11 Missense_Mutation p.A1116V 0.09 possibly_damaging(0.601) TCGA-VR-AA7B-01 16 90057396 90057396 C T AFG3L1P RNA 0.41 TCGA-VR-AA7B-01 17 18023073 18023073 C T MYO15A Missense_Mutation p.S320L 0.24 benign(0.177) TCGA-VR-AA7B-01 17 42462407 42462407 C G ITGA2B Silent p.S236S 0.21 TCGA-VR-AA7B-01 17 42931671 42931671 C G EFTUD2 Missense_Mutation p.Q771H 0.10 deleterious(0) probably_damaging(0.986) TCGA-VR-AA7B-01 17 64801322 64801322 C T PRKCA 3'UTR 0.29 TCGA-VR-AA7B-01 17 73759429 73759429 C T GALK1 Silent p.T149T 0.44 TCGA-VR-AA7B-01 17 7576652 7576652 C T TP53 Intron 0.29 TCGA-VR-AA7B-01 17 7578442 7578442 T C TP53 Missense_Mutation p.Y163C 0.50 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7B-01 18 13884645 13884645 G T MC2R Silent p.I291I 0.23 TCGA-VR-AA7B-01 18 14779985 14779985 C T ANKRD30B Nonsense_Mutation p.R483* 0.36 TCGA-VR-AA7B-01 18 19080511 19080511 C T GREB1L Missense_Mutation p.T1327M 0.20 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 18 19284501 19284501 G A ABHD3 Silent p.V42V 0.14 TCGA-VR-AA7B-01 18 40850370 40850370 C T SYT4 Nonsense_Mutation p.W405* 0.15 TCGA-VR-AA7B-01 18 44584698 44584698 C T KATNAL2 Missense_Mutation p.S70L 0.11 tolerated(0.17) benign(0.001) TCGA-VR-AA7B-01 18 52896218 52896218 C T TCF4 Missense_Mutation p.R682Q 0.34 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 18 58039811 58039811 C T MC4R 5'UTR 0.34 TCGA-VR-AA7B-01 18 77733717 77733717 G A TXNL4A Missense_Mutation p.P133S 0.33 deleterious(0.01) probably_damaging(0.947) TCGA-VR-AA7B-01 19 17937609 17937609 C G JAK3 Missense_Mutation p.E1106D 0.18 tolerated_low_confidence(0.24) benign(0.001) TCGA-VR-AA7B-01 19 18322638 18322638 G A PDE4C Silent p.R574R 0.24 TCGA-VR-AA7B-01 19 23544910 23544910 C T ZNF91 Missense_Mutation p.E291K 0.14 deleterious(0.05) possibly_damaging(0.57) TCGA-VR-AA7B-01 19 36370269 36370269 G A APLP1 Missense_Mutation p.E628K 0.18 deleterious(0) probably_damaging(0.996) TCGA-VR-AA7B-01 19 44981054 44981054 C T ZNF180 Silent p.P548P 0.25 TCGA-VR-AA7B-01 19 45821144 45821144 C A CKM Missense_Mutation p.R96L 0.17 tolerated(0.07) possibly_damaging(0.558) TCGA-VR-AA7B-01 19 51294951 51294951 G A ACPT Silent p.E114E 0.17 TCGA-VR-AA7B-01 19 54308650 54308650 G A NLRP12 Silent p.L766L 0.39 TCGA-VR-AA7B-01 19 55450647 55450647 C T NLRP7 Missense_Mutation p.D514N 0.25 tolerated(0.89) benign(0.03) TCGA-VR-AA7B-01 19 9003588 9003588 G A MUC16 Missense_Mutation p.T13351M 0.12 probably_damaging(0.992) TCGA-VR-AA7B-01 1 101007106 101007106 C G GPR88 3'UTR 0.62 TCGA-VR-AA7B-01 1 117146501 117146501 G A IGSF3 Missense_Mutation p.R477C 0.22 deleterious(0.02) possibly_damaging(0.832) TCGA-VR-AA7B-01 1 12378163 12378163 C A VPS13D Missense_Mutation p.L2395I 0.25 possibly_damaging(0.694) TCGA-VR-AA7B-01 1 151671278 151671278 C T SNX27 3'UTR 0.54 TCGA-VR-AA7B-01 1 154215741 154215741 C G UBAP2L Missense_Mutation p.L269V 0.48 tolerated(0.13) unknown(0) TCGA-VR-AA7B-01 1 157512737 157512737 C T FCRL5 Silent p.L345L 0.15 TCGA-VR-AA7B-01 1 16349185 16349185 C T CLCNKA Missense_Mutation p.P24L 0.55 deleterious(0) possibly_damaging(0.901) TCGA-VR-AA7B-01 1 174417614 174417614 C G GPR52 Nonsense_Mutation p.S122* 0.41 TCGA-VR-AA7B-01 1 197404164 197404164 C T CRB1 Silent p.N1057N 0.20 TCGA-VR-AA7B-01 1 215793774 215793774 G A KCTD3 Silent p.R754R 0.23 TCGA-VR-AA7B-01 1 232650439 232650439 C T SIPA1L2 Missense_Mutation p.R216Q 0.24 tolerated(0.4) probably_damaging(0.99) TCGA-VR-AA7B-01 1 240370862 240370862 G A FMN2 Missense_Mutation p.G917E 0.31 unknown(0) TCGA-VR-AA7B-01 1 240637787 240637787 G C FMN2 3'UTR 0.14 TCGA-VR-AA7B-01 1 240939036 240939036 C T RGS7 3'UTR 0.23 TCGA-VR-AA7B-01 1 27240299 27240299 G A NR0B2 Missense_Mutation p.R45W 0.50 deleterious(0.01) benign(0.236) TCGA-VR-AA7B-01 1 31742271 31742271 T A SNRNP40 Intron 0.65 TCGA-VR-AA7B-01 1 32508359 32508359 C G KHDRBS1 3'UTR 0.58 TCGA-VR-AA7B-01 1 32508568 32508568 C G KHDRBS1 3'UTR 0.50 TCGA-VR-AA7B-01 1 36785719 36785719 C T SH3D21 Silent p.V485V 0.23 TCGA-VR-AA7B-01 1 39835766 39835766 C T MACF1 Nonsense_Mutation p.Q2273* 0.07 TCGA-VR-AA7B-01 1 45292420 45292420 C G PTCH2 Missense_Mutation p.E906Q 0.67 tolerated(0.13) possibly_damaging(0.739) TCGA-VR-AA7B-01 1 52871486 52871486 G C PRPF38A Missense_Mutation p.E89Q 0.19 deleterious(0) probably_damaging(0.993) TCGA-VR-AA7B-01 1 76228539 76228539 A G ACADM 3'Flank 0.16 TCGA-VR-AA7B-01 1 77094397 77094397 G A ST6GALNAC3 Missense_Mutation p.G275E 0.53 probably_damaging(1) TCGA-VR-AA7B-01 1 89318712 89318712 A C GTF2B 3'UTR 0.74 TCGA-VR-AA7B-01 20 31041537 31041537 C T C20orf112 Missense_Mutation p.D139N 0.11 deleterious(0.02) probably_damaging(0.995) TCGA-VR-AA7B-01 20 39795158 39795158 G T PLCG1 Missense_Mutation p.M681I 0.35 tolerated(0.17) probably_damaging(0.995) TCGA-VR-AA7B-01 20 4681389 4681389 T - PRNP 3'UTR 0.29 TCGA-VR-AA7B-01 20 58533735 58533735 G A CDH26 5'UTR 0.14 TCGA-VR-AA7B-01 20 858914 858914 G A ANGPT4 Silent p.L370L 0.23 TCGA-VR-AA7B-01 21 30716607 30716607 C T BACH1 3'UTR 0.15 TCGA-VR-AA7B-01 21 33887546 33887546 G A EVA1C 3'UTR 0.14 TCGA-VR-AA7B-01 22 22840888 22840888 G C ZNF280B 3'UTR 0.57 TCGA-VR-AA7B-01 22 24896222 24896222 C A UPB1 Silent p.P84P 0.50 TCGA-VR-AA7B-01 22 25280128 25280128 C A SGSM1 Missense_Mutation p.T590K 0.20 deleterious(0) possibly_damaging(0.774) TCGA-VR-AA7B-01 22 25750717 25750717 G T LRP5L Missense_Mutation p.F167L 0.45 deleterious(0) probably_damaging(0.983) TCGA-VR-AA7B-01 22 29446744 29446744 C T ZNRF3 Nonsense_Mutation p.R859* 0.45 TCGA-VR-AA7B-01 22 29542154 29542154 G A KREMEN1 Intron 0.19 TCGA-VR-AA7B-01 22 31019043 31019043 C T TCN2 Nonsense_Mutation p.R399* 0.12 TCGA-VR-AA7B-01 22 32112599 32112599 C G PRR14L Missense_Mutation p.R409T 0.18 deleterious(0.03) benign(0.124) TCGA-VR-AA7B-01 22 32587270 32587270 C T RFPL2 Missense_Mutation p.R209Q 0.57 tolerated(0.42) benign(0.004) TCGA-VR-AA7B-01 22 37769180 37769180 C T ELFN2 Missense_Mutation p.A799T 0.21 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 2 135215728 135215728 C G TMEM163 Silent p.V228V 0.50 TCGA-VR-AA7B-01 2 174074471 174074471 C G MLTK Missense_Mutation p.F253L 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-VR-AA7B-01 2 191366244 191366244 G A MFSD6 3'UTR 0.50 TCGA-VR-AA7B-01 2 191366293 191366293 G A MFSD6 3'UTR 0.45 TCGA-VR-AA7B-01 2 197066110 197066110 G A HECW2 Missense_Mutation p.A1537V 0.33 deleterious(0) probably_damaging(0.991) TCGA-VR-AA7B-01 2 207172018 207172018 C A ZDBF2 Silent p.I922I 0.23 TCGA-VR-AA7B-01 2 207174923 207174923 C G ZDBF2 Missense_Mutation p.Q1891E 0.12 tolerated(0.19) benign(0.042) TCGA-VR-AA7B-01 2 210595823 210595823 G C MAP2 3'UTR 0.71 TCGA-VR-AA7B-01 2 229889476 229889476 G A PID1 3'UTR 0.47 TCGA-VR-AA7B-01 2 28789701 28789717 TGGCGAGTGAGTACGCG A PLB1 Splice_Site p.X440_splice 0.31 TCGA-VR-AA7B-01 2 5837384 5837384 C A SOX11 3'UTR 0.84 TCGA-VR-AA7B-01 2 85771763 85771763 G A MAT2A 3'UTR 0.24 TCGA-VR-AA7B-01 3 108163547 108163547 C T MYH15 Silent p.L885L 0.15 TCGA-VR-AA7B-01 3 113367480 113367480 G C KIAA2018 3'UTR 0.12 TCGA-VR-AA7B-01 3 119204210 119204210 C G POGLUT1 Missense_Mutation p.S205C 0.10 deleterious(0.01) probably_damaging(0.95) TCGA-VR-AA7B-01 3 121230769 121230769 C T POLQ Missense_Mutation p.E526K 0.19 tolerated(0.11) possibly_damaging(0.49) TCGA-VR-AA7B-01 3 129279267 129279267 G A PLXND1 Missense_Mutation p.T1680M 0.22 deleterious(0.01) probably_damaging(0.982) TCGA-VR-AA7B-01 3 130659491 130659491 A G ATP2C1 Silent p.K160K 0.24 TCGA-VR-AA7B-01 3 130720678 130720678 C T ATP2C1 Intron 0.29 TCGA-VR-AA7B-01 3 164907208 164907208 G A SLITRK3 Silent p.L471L 0.08 TCGA-VR-AA7B-01 3 169539752 169539752 C G LRRIQ4 Missense_Mutation p.H15D 0.11 tolerated_low_confidence(0.21) benign(0.015) TCGA-VR-AA7B-01 3 182933848 182933848 G C MCF2L2 Nonsense_Mutation p.S802* 0.20 TCGA-VR-AA7B-01 3 184091254 184091254 A G THPO Silent p.S115S 0.15 TCGA-VR-AA7B-01 3 197639584 197639584 G C IQCG Missense_Mutation p.H309D 0.29 deleterious(0) probably_damaging(0.993) TCGA-VR-AA7B-01 3 38163174 38163174 G T DLEC1 Missense_Mutation p.W1641L 0.83 tolerated(0.09) benign(0.138) TCGA-VR-AA7B-01 3 56662638 56662638 T C FAM208A Missense_Mutation p.Y1251C 0.24 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 4 110915911 110915911 C T EGF Silent p.L960L 0.21 TCGA-VR-AA7B-01 4 126372870 126372870 A G FAT4 Missense_Mutation p.S3567G 0.33 possibly_damaging(0.578) TCGA-VR-AA7B-01 4 160268112 160268112 C T RAPGEF2 Missense_Mutation p.S1064L 0.18 tolerated(0.7) benign(0.003) TCGA-VR-AA7B-01 4 167655806 167655806 A C SPOCK3 3'UTR 0.35 TCGA-VR-AA7B-01 4 170983068 170983068 G A AADAT Missense_Mutation p.S404L 0.30 tolerated(1) benign(0.001) TCGA-VR-AA7B-01 4 178231034 178231034 C T NEIL3 5'UTR 0.17 TCGA-VR-AA7B-01 4 42145544 42145544 C T BEND4 Missense_Mutation p.E319K 0.32 deleterious_low_confidence(0) possibly_damaging(0.905) TCGA-VR-AA7B-01 4 48782141 48782141 G A FRYL 5'UTR 0.29 TCGA-VR-AA7B-01 4 54231952 54231952 C G SCFD2 Missense_Mutation p.D53H 0.23 tolerated(0.15) benign(0.235) TCGA-VR-AA7B-01 4 76890468 76890468 C G SDAD1 Missense_Mutation p.R323T 0.04 deleterious(0) probably_damaging(0.996) TCGA-VR-AA7B-01 4 76890482 76890482 C T SDAD1 Missense_Mutation p.M318I 0.05 tolerated(0.12) benign(0.034) TCGA-VR-AA7B-01 5 140755585 140755585 C T PCDHGA6 Silent p.A645A 0.43 TCGA-VR-AA7B-01 5 140755848 140755848 C T PCDHGA6 Missense_Mutation p.A733V 0.37 tolerated_low_confidence(0.24) benign(0.004) TCGA-VR-AA7B-01 5 141243774 141243774 C T PCDH1 Missense_Mutation p.E708K 0.45 deleterious(0.04) probably_damaging(0.998) TCGA-VR-AA7B-01 5 150901029 150901029 C T FAT2 Missense_Mutation p.E3709K 0.36 probably_damaging(0.968) TCGA-VR-AA7B-01 5 150929062 150929062 C T FAT2 Missense_Mutation p.R1528Q 0.42 probably_damaging(1) TCGA-VR-AA7B-01 5 150948297 150948297 G A FAT2 Nonsense_Mutation p.Q66* 0.44 TCGA-VR-AA7B-01 5 153381887 153381887 G A FAM114A2 Missense_Mutation p.H394Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7B-01 5 176758913 176758913 C T LMAN2 3'UTR 0.17 TCGA-VR-AA7B-01 5 36686602 36686602 G A SLC1A3 3'UTR 0.11 TCGA-VR-AA7B-01 6 106756264 106756264 C G ATG5 Missense_Mutation p.E71Q 0.15 deleterious(0.02) possibly_damaging(0.791) TCGA-VR-AA7B-01 6 112466087 112466087 G A LAMA4 Missense_Mutation p.T801M 0.09 tolerated(0.18) benign(0.228) TCGA-VR-AA7B-01 6 116579735 116579735 T A TSPYL4 5'Flank 0.53 TCGA-VR-AA7B-01 6 133091405 133091405 C T SLC18B1 3'UTR 0.39 TCGA-VR-AA7B-01 6 46826698 46826698 T - GPR116 Frame_Shift_Del p.D981Afs*10 0.33 TCGA-VR-AA7B-01 6 52142452 52142470 GGGGCCAATGACTTGGCCA - MCM3 Frame_Shift_Del p.L344Qfs*25 0.20 TCGA-VR-AA7B-01 6 70850865 70850865 G A COL19A1 Missense_Mutation p.G489E 0.22 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 6 7580047 7580048 - AAGT DSP Frame_Shift_Ins p.Y1210* 0.58 TCGA-VR-AA7B-01 6 76407192 76407215 TATTTTTGAGAAGGATTTTATTTT - SENP6 In_Frame_Del p.I750_F757del 0.28 TCGA-VR-AA7B-01 6 87965877 87965877 C A ZNF292 Missense_Mutation p.Q844K 0.33 tolerated(0.24) benign(0.017) TCGA-VR-AA7B-01 6 96053781 96053781 G T MANEA Nonsense_Mutation p.G297* 0.17 TCGA-VR-AA7B-01 6 96053793 96053797 GCCCT CCCC MANEA Frame_Shift_Del p.A301Pfs*4 0.19 TCGA-VR-AA7B-01 7 115898649 115898649 G C TES 3'UTR 0.21 TCGA-VR-AA7B-01 7 124481087 124481087 G C POT1 Missense_Mutation p.H437D 0.24 deleterious(0.01) probably_damaging(0.972) TCGA-VR-AA7B-01 7 148497645 148497645 G A CUL1 Missense_Mutation p.E768K 0.54 tolerated(0.11) benign(0.061) TCGA-VR-AA7B-01 7 150776949 150776949 C T FASTK Missense_Mutation p.R48Q 0.62 tolerated_low_confidence(0.05) benign(0.007) TCGA-VR-AA7B-01 7 27192368 27192368 G C HOXA7 3'Flank 0.15 TCGA-VR-AA7B-01 7 27210354 27210354 G A HOXA10 3'UTR 0.17 TCGA-VR-AA7B-01 7 6456205 6456205 G C DAGLB Intron 0.17 TCGA-VR-AA7B-01 7 71252137 71252137 C G CALN1 3'UTR 0.43 TCGA-VR-AA7B-01 7 87537005 87537005 C G DBF4 Missense_Mutation p.L518V 0.36 tolerated(0.07) benign(0.008) TCGA-VR-AA7B-01 7 88847592 88847592 G C ZNF804B Missense_Mutation p.D78H 0.19 deleterious(0) probably_damaging(0.994) TCGA-VR-AA7B-01 8 110408292 110408292 G A PKHD1L1 Missense_Mutation p.R283Q 0.15 tolerated(0.89) benign(0.003) TCGA-VR-AA7B-01 8 110471942 110471942 G C PKHD1L1 Missense_Mutation p.D2375H 0.09 deleterious(0) probably_damaging(0.99) TCGA-VR-AA7B-01 8 124265591 124265591 G A ZHX1 Missense_Mutation p.R866W 0.08 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-VR-AA7B-01 8 124368675 124368675 C G ATAD2 Missense_Mutation p.D534H 0.11 deleterious(0) probably_damaging(1) TCGA-VR-AA7B-01 8 139144362 139144362 C A FAM135B 3'UTR 0.14 TCGA-VR-AA7B-01 8 139144977 139144977 A C FAM135B Silent p.T1360T 0.22 TCGA-VR-AA7B-01 8 139255189 139255189 G C FAM135B Nonsense_Mutation p.S222* 0.11 TCGA-VR-AA7B-01 8 17412489 17412489 C T SLC7A2 Intron 0.37 TCGA-VR-AA7B-01 8 48866215 48866215 G C PRKDC Nonsense_Mutation p.S229* 0.20 TCGA-VR-AA7B-01 8 71050559 71050559 C G NCOA2 Missense_Mutation p.E1013Q 0.11 deleterious(0.01) possibly_damaging(0.563) TCGA-VR-AA7B-01 8 74893683 74893683 G C TMEM70 Missense_Mutation p.D204H 0.21 deleterious(0.01) possibly_damaging(0.878) TCGA-VR-AA7B-01 8 86027421 86027421 G A LRRCC1 Missense_Mutation p.E211K 0.06 tolerated(0.07) benign(0.009) TCGA-VR-AA7B-01 9 105767853 105767853 G C CYLC2 Missense_Mutation p.D314H 0.63 tolerated_low_confidence(0.11) unknown(0) TCGA-VR-AA7B-01 9 116029647 116029647 T C CDC26 Missense_Mutation p.S52G 0.52 tolerated(0.35) benign(0.001) TCGA-VR-AA7B-01 9 130206956 130206956 C T ZNF79 Missense_Mutation p.T326I 0.12 tolerated(1) benign(0.193) TCGA-VR-AA7B-01 9 134379603 134379614 AAGATGTGGGGA - POMT1 Missense_Mutation 0.31 TCGA-VR-AA7B-01 9 33953307 33953307 G A UBAP2 Silent p.V344V 0.65 TCGA-VR-AA7B-01 9 79322566 79322566 G T PRUNE2 Missense_Mutation p.H1542N 0.59 deleterious(0.04) possibly_damaging(0.776) TCGA-VR-AA7B-01 X 100871258 100871258 C T ARMCX6 Missense_Mutation p.C118Y 0.19 tolerated(0.12) benign(0.003) TCGA-VR-AA7B-01 X 110406853 110406853 C T PAK3 Missense_Mutation p.P258S 0.24 tolerated(0.28) benign(0.005) TCGA-VR-AA7B-01 X 118221021 118221021 C T KIAA1210 Missense_Mutation p.S1391N 0.20 tolerated(0.25) benign(0.009) TCGA-VR-AA7B-01 X 119390487 119390487 A G ZBTB33 3'UTR 0.21 TCGA-VR-AA7B-01 X 125299586 125299586 C T DCAF12L2 Missense_Mutation p.A108T 0.22 tolerated(0.5) benign(0.003) TCGA-VR-AA7B-01 X 125685531 125685531 C T DCAF12L1 Missense_Mutation p.R354Q 0.44 deleterious(0.02) possibly_damaging(0.653) TCGA-VR-AA7B-01 X 130217775 130217775 G A ARHGAP36 Silent p.K129K 0.38 TCGA-VR-AA7B-01 X 135747832 135747832 A G ARHGEF6 3'UTR 0.48 TCGA-VR-AA7B-01 X 139866523 139866523 C A CDR1 Missense_Mutation p.W3C 0.08 deleterious(0.02) benign(0.143) TCGA-VR-AA7B-01 X 140336535 140336535 T A SPANXC Missense_Mutation p.N19I 0.20 deleterious(0) probably_damaging(0.998) TCGA-VR-AA7B-01 X 14863281 14863281 G C FANCB Missense_Mutation p.P542A 0.07 tolerated(0.07) benign(0.081) TCGA-VR-AA7B-01 X 14921105 14921105 G C MOSPD2 Missense_Mutation p.D186H 0.12 deleterious(0) probably_damaging(0.964) TCGA-VR-AA7B-01 X 151093195 151093195 C T MAGEA4 3'UTR 0.42 TCGA-VR-AA7B-01 X 153052328 153052328 G A IDH3G Silent p.C284C 0.65 TCGA-VR-AA7B-01 X 15618926 15618926 C T ACE2 Missense_Mutation p.E37K 0.18 deleterious(0.04) probably_damaging(0.928) TCGA-VR-AA7B-01 X 19934770 19934770 G C CXorf23 3'UTR 0.70 TCGA-VR-AA7B-01 X 54584945 54584945 G T GNL3L Missense_Mutation p.R508L 0.16 tolerated(0.68) benign(0) TCGA-VR-AA7B-01 X 70612510 70612510 C T TAF1 Missense_Mutation p.T978M 0.25 deleterious(0) probably_damaging(0.998) TCGA-VR-AA7B-01 X 73070744 73070744 G A XIST RNA 0.39 TCGA-VR-AA7D-01 10 126523903 126523904 - A FAM175B 3'UTR 0.22 TCGA-VR-AA7D-01 10 27538198 27538198 C G RP11-85G18.6 Intron 0.29 TCGA-VR-AA7D-01 10 46321476 46321476 C A AGAP4 Missense_Mutation p.V627F 0.32 deleterious(0.02) possibly_damaging(0.644) TCGA-VR-AA7D-01 10 61830487 61830487 C T ANK3 Silent p.Q3384Q 0.07 TCGA-VR-AA7D-01 10 71678829 71678829 G A COL13A1 Silent p.G347G 0.18 TCGA-VR-AA7D-01 10 81192403 81192403 C T ZCCHC24 Missense_Mutation p.E120K 0.35 deleterious_low_confidence(0.04) possibly_damaging(0.769) TCGA-VR-AA7D-01 10 97819214 97819214 A - CCNJ 3'UTR 0.39 TCGA-VR-AA7D-01 11 114577254 114577254 G A NXPE2 Missense_Mutation p.E428K 0.45 tolerated(0.54) benign(0.062) TCGA-VR-AA7D-01 11 118392772 118392772 G A KMT2A Missense_Mutation p.R3935H 0.50 probably_damaging(0.998) TCGA-VR-AA7D-01 11 22360130 22360130 G C SLC17A6 Missense_Mutation p.K17N 0.27 deleterious(0.01) possibly_damaging(0.517) TCGA-VR-AA7D-01 11 47460440 47460440 G T RAPSN Missense_Mutation p.R337S 0.46 tolerated(0.21) benign(0.116) TCGA-VR-AA7D-01 11 55418727 55418727 G - OR4S2 Frame_Shift_Del p.A117Pfs*15 0.51 TCGA-VR-AA7D-01 11 56043399 56043399 C A OR5T1 Silent p.V95V 0.35 TCGA-VR-AA7D-01 11 64083538 64083538 C G ESRRA 3'UTR 0.19 TCGA-VR-AA7D-01 11 68773294 68773294 C T MRGPRF Missense_Mutation p.V162M 0.08 deleterious(0.01) possibly_damaging(0.78) TCGA-VR-AA7D-01 12 101728221 101728221 G C UTP20 Missense_Mutation p.E1194Q 0.13 deleterious(0) possibly_damaging(0.878) TCGA-VR-AA7D-01 12 13211414 13211414 G A KIAA1467 Missense_Mutation p.D155N 0.27 deleterious(0) probably_damaging(0.996) TCGA-VR-AA7D-01 12 29626014 29626014 T C OVCH1 Silent p.P541P 0.30 TCGA-VR-AA7D-01 12 32977060 32977060 C T PKP2 Silent p.A575A 0.13 TCGA-VR-AA7D-01 12 42778782 42778782 A G PPHLN1 Silent p.E184E 0.24 TCGA-VR-AA7D-01 12 52881551 52881551 T G KRT6A Missense_Mutation p.K550Q 0.07 deleterious(0.04) unknown(0) TCGA-VR-AA7D-01 12 53497990 53497990 G A SOAT2 Silent p.E46E 0.37 TCGA-VR-AA7D-01 12 93795568 93795568 C A NUDT4 3'UTR 0.27 TCGA-VR-AA7D-01 13 113201973 113201973 G A TUBGCP3 Nonsense_Mutation p.R377* 0.08 TCGA-VR-AA7D-01 13 21751269 21751269 G C MRP63 Missense_Mutation p.E72Q 0.31 tolerated(0.39) benign(0.03) TCGA-VR-AA7D-01 13 33309450 33309450 C T PDS5B Missense_Mutation p.L797F 0.40 deleterious(0.04) possibly_damaging(0.48) TCGA-VR-AA7D-01 13 39263873 39263873 C G FREM2 Missense_Mutation p.R798G 0.30 deleterious(0.01) possibly_damaging(0.666) TCGA-VR-AA7D-01 13 80127108 80127108 G A NDFIP2 3'UTR 0.35 TCGA-VR-AA7D-01 13 97485218 97485218 C T HS6ST3 Silent p.R394R 0.31 TCGA-VR-AA7D-01 14 103808992 103808992 G A EIF5 3'UTR 0.37 TCGA-VR-AA7D-01 14 21109503 21109503 C T OR6S1 Silent p.L116L 0.14 TCGA-VR-AA7D-01 14 21868426 21868426 T - CHD8 Frame_Shift_Del p.V1538* 0.31 TCGA-VR-AA7D-01 14 50244592 50244592 G A KLHDC2 Silent p.V129V 0.36 TCGA-VR-AA7D-01 14 65197822 65197822 A C PLEKHG3 Missense_Mutation p.M206L 0.38 tolerated(0.07) possibly_damaging(0.881) TCGA-VR-AA7D-01 15 55621954 55621954 G T PIGB Missense_Mutation p.W185C 0.15 tolerated(0.1) benign(0.383) TCGA-VR-AA7D-01 15 62207860 62207860 T A VPS13C Missense_Mutation p.K2806M 0.33 deleterious(0) probably_damaging(0.998) TCGA-VR-AA7D-01 15 64026961 64026961 G A HERC1 Nonsense_Mutation p.Q870* 0.19 TCGA-VR-AA7D-01 15 64692982 64692982 C G TRIP4 Nonsense_Mutation p.S220* 0.38 TCGA-VR-AA7D-01 15 89195433 89195433 C G ISG20 Missense_Mutation p.I107M 0.15 deleterious(0.02) benign(0.177) TCGA-VR-AA7D-01 16 1116262 1116262 G A RP11-161M6.5 RNA 0.43 TCGA-VR-AA7D-01 16 11348728 11348728 T G SOCS1 Missense_Mutation p.Y203S 0.32 deleterious(0) possibly_damaging(0.829) TCGA-VR-AA7D-01 16 19475199 19475199 C T TMC5 Silent p.V446V 0.39 TCGA-VR-AA7D-01 16 30020351 30020351 T A DOC2A Missense_Mutation p.I165F 0.30 tolerated(0.29) probably_damaging(0.973) TCGA-VR-AA7D-01 16 3065618 3065618 G A CLDN6 Silent p.P135P 0.08 TCGA-VR-AA7D-01 16 3788617 3788617 C A CREBBP Missense_Mutation p.R1446L 0.33 unknown(0) TCGA-VR-AA7D-01 16 4827874 4827874 G A SEPT12 Missense_Mutation p.S334F 0.36 deleterious(0.01) benign(0.169) TCGA-VR-AA7D-01 16 53720465 53720465 C G RPGRIP1L Missense_Mutation p.R219T 0.37 deleterious(0) benign(0.091) TCGA-VR-AA7D-01 17 2901588 2901588 C A RAP1GAP2 Missense_Mutation p.P373Q 0.25 deleterious(0) probably_damaging(1) TCGA-VR-AA7D-01 17 30697191 30697191 G A ZNF207 3'UTR 0.42 TCGA-VR-AA7D-01 17 45668212 45668212 G A NPEPPS Missense_Mutation p.E409K 0.12 tolerated(0.17) benign(0.259) TCGA-VR-AA7D-01 17 47676787 47676787 C G SPOP 3'UTR 0.25 TCGA-VR-AA7D-01 17 62777687 62777687 C A hsa-mir-6080 RNA 0.57 TCGA-VR-AA7D-01 17 63007616 63007616 C T GNA13 3'UTR 0.30 TCGA-VR-AA7D-01 17 66265162 66265162 G A SLC16A6 3'UTR 0.42 TCGA-VR-AA7D-01 17 71189190 71189190 G A COG1 5'UTR 0.55 TCGA-VR-AA7D-01 17 7578479 7578479 G A TP53 Missense_Mutation p.P151S 0.85 deleterious(0.01) possibly_damaging(0.876) TCGA-VR-AA7D-01 17 79660958 79660958 C T HGS Missense_Mutation p.S300L 0.26 deleterious(0) probably_damaging(0.916) TCGA-VR-AA7D-01 17 80445912 80445912 A T NARF Missense_Mutation p.H417L 0.17 tolerated(0.69) benign(0.155) TCGA-VR-AA7D-01 18 12325138 12325138 T G TUBB6 Missense_Mutation p.L117R 0.22 deleterious_low_confidence(0) probably_damaging(1) TCGA-VR-AA7D-01 18 12325139 12325139 G T TUBB6 Silent p.L117L 0.22 TCGA-VR-AA7D-01 18 48603032 48603032 C T SMAD4 Nonsense_Mutation p.R445* 0.52 TCGA-VR-AA7D-01 18 8376571 8376571 G A PTPRM Silent p.R1146R 0.18 TCGA-VR-AA7D-01 19 10673510 10673510 G A KRI1 Missense_Mutation p.S99L 0.23 tolerated(0.14) benign(0.007) TCGA-VR-AA7D-01 19 15292532 15292532 G A NOTCH3 Nonsense_Mutation p.R883* 0.33 TCGA-VR-AA7D-01 19 19760397 19760397 C A ATP13A1 Missense_Mutation p.A871S 0.29 deleterious(0) probably_damaging(1) TCGA-VR-AA7D-01 19 21606488 21606488 C T ZNF493 Missense_Mutation p.H343Y 0.38 deleterious(0) unknown(0) TCGA-VR-AA7D-01 19 36212415 36212415 C T KMT2B Silent p.H722H 0.11 TCGA-VR-AA7D-01 19 3980008 3980008 T C EEF2 Missense_Mutation p.N468S 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-VR-AA7D-01 19 51451943 51451943 C T KLK5 Missense_Mutation p.D227N 0.36 tolerated(0.53) benign(0.154) TCGA-VR-AA7D-01 19 52724234 52724234 T C PPP2R1A Missense_Mutation p.Y456H 0.39 tolerated(0.08) possibly_damaging(0.787) TCGA-VR-AA7D-01 19 52794236 52794236 C A ZNF766 Missense_Mutation p.L398I 0.28 deleterious(0.01) probably_damaging(0.994) TCGA-VR-AA7D-01 19 54646887 54646887 G A CNOT3 Missense_Mutation p.E20K 0.18 deleterious(0) probably_damaging(0.994) TCGA-VR-AA7D-01 19 56200328 56200328 G A EPN1 Missense_Mutation p.A302T 0.32 deleterious(0) unknown(0) TCGA-VR-AA7D-01 19 57924970 57924970 T C AC003002.6 Intron 0.38 TCGA-VR-AA7D-01 19 846367 846367 G A PRTN3 Missense_Mutation p.G197D 0.48 tolerated(0.05) probably_damaging(0.998) TCGA-VR-AA7D-01 1 101455897 101455897 A - DPH5 3'UTR 0.34 TCGA-VR-AA7D-01 1 102268974 102268974 T A OLFM3 3'UTR 0.30 TCGA-VR-AA7D-01 1 12711295 12711295 T A AADACL4 Missense_Mutation p.S108T 0.31 deleterious(0.05) possibly_damaging(0.881) TCGA-VR-AA7D-01 1 144916732 144916732 C T PDE4DIP Silent p.L541L 0.22 TCGA-VR-AA7D-01 1 155110819 155110820 - CAG SLC50A1 3'UTR 0.45 TCGA-VR-AA7D-01 1 155740961 155740961 T A GON4L Missense_Mutation p.N848I 0.36 deleterious(0.02) benign(0.147) TCGA-VR-AA7D-01 1 156220038 156220038 C T SMG5 3'UTR 0.54 TCGA-VR-AA7D-01 1 17263342 17263342 C T CROCC Silent p.D389D 0.19 TCGA-VR-AA7D-01 1 181058181 181058181 T A IER5 Missense_Mutation p.L48Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-VR-AA7D-01 1 184853931 184853931 G T FAM129A Missense_Mutation p.S146Y 0.42 tolerated(0.16) possibly_damaging(0.583) TCGA-VR-AA7D-01 1 192985454 192985454 G A UCHL5 3'UTR 0.23 TCGA-VR-AA7D-01 1 202287572 202287572 C T LGR6 Missense_Mutation p.S714F 0.35 deleterious(0) probably_damaging(0.954) TCGA-VR-AA7D-01 1 211919546 211919546 C T LPGAT1 3'UTR 0.33 TCGA-VR-AA7D-01 1 228560180 228560180 C T OBSCN Missense_Mutation p.S8191L 0.38 benign(0.397) TCGA-VR-AA7D-01 1 228602544 228602544 T A TRIM17 Missense_Mutation p.N77I 0.28 deleterious(0.01) benign(0.096) TCGA-VR-AA7D-01 1 246784932 246784932 A G CNST Missense_Mutation p.H194R 0.61 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7D-01 1 38023339 38023339 C A DNALI1 Missense_Mutation p.L95I 0.21 tolerated(0.11) possibly_damaging(0.592) TCGA-VR-AA7D-01 1 43891189 43891189 A T SZT2 Missense_Mutation p.E897V 0.27 deleterious(0) probably_damaging(0.983) TCGA-VR-AA7D-01 20 23728452 23728452 C T CST1 3'UTR 0.16 TCGA-VR-AA7D-01 20 25277028 25277028 A G PYGB Missense_Mutation p.K801R 0.22 tolerated(0.23) benign(0.062) TCGA-VR-AA7D-01 20 33568835 33568835 G C MYH7B Splice_Site p.X209_splice 0.18 TCGA-VR-AA7D-01 20 43704769 43704769 G A STK4 3'UTR 0.56 TCGA-VR-AA7D-01 20 47866096 47866096 G A ZNFX1 Silent p.T1155T 0.30 TCGA-VR-AA7D-01 20 48604672 48604672 T C SNAI1 3'UTR 0.62 TCGA-VR-AA7D-01 20 54959346 54959346 C T AURKA Silent p.Q118Q 0.19 TCGA-VR-AA7D-01 20 56935539 56935539 G A RAB22A 3'UTR 0.22 TCGA-VR-AA7D-01 20 57484444 57484444 G C GNAS Missense_Mutation p.E852Q 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-VR-AA7D-01 20 60912751 60912751 C T LAMA5 Missense_Mutation p.A687T 0.11 benign(0.094) TCGA-VR-AA7D-01 21 34787211 34787211 G T IFNGR2 Silent p.L30L 0.50 TCGA-VR-AA7D-01 22 29879448 29879448 G A NEFH Missense_Mutation p.R323H 0.29 deleterious(0.03) unknown(0) TCGA-VR-AA7D-01 22 47069673 47069688 AGATCTTCAATCTGAC - GRAMD4 Frame_Shift_Del p.I450Kfs*59 0.28 TCGA-VR-AA7D-01 2 120799579 120799579 C T EPB41L5 Intron 0.39 TCGA-VR-AA7D-01 2 162757652 162757652 A G SLC4A10 Intron 0.32 TCGA-VR-AA7D-01 2 179736884 179736884 C T CCDC141 Silent p.A685A 0.44 TCGA-VR-AA7D-01 2 18768420 18768420 G T NT5C1B Missense_Mutation p.P47Q 0.69 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-VR-AA7D-01 2 202005016 202005016 A G CFLAR Intron 0.36 TCGA-VR-AA7D-01 2 216214455 216214455 A T ATIC 3'UTR 0.46 TCGA-VR-AA7D-01 2 69399605 69399605 G T ANTXR1 Intron 0.38 TCGA-VR-AA7D-01 2 85361007 85361007 C A TCF7L1 Nonsense_Mutation p.S67* 0.29 TCGA-VR-AA7D-01 3 122598588 122598588 G A DIRC2 3'UTR 0.17 TCGA-VR-AA7D-01 3 124303670 124303670 T C KALRN Translation_Start_Site p.M1? 0.23 deleterious_low_confidence(0) benign(0.01) TCGA-VR-AA7D-01 3 132415603 132415604 - A NPHP3 Frame_Shift_Ins p.V715Cfs*19 0.23 TCGA-VR-AA7D-01 3 149683756 149683756 T C PFN2 3'UTR 0.14 TCGA-VR-AA7D-01 3 150261710 150261710 A C SERP1 3'UTR 0.24 TCGA-VR-AA7D-01 3 180397551 180397551 A G CCDC39 5'Flank 0.56 TCGA-VR-AA7D-01 3 47098822 47098822 G A SETD2 Missense_Mutation p.P2151L 0.60 deleterious(0) possibly_damaging(0.804) TCGA-VR-AA7D-01 3 58635041 58635041 C T FAM3D Splice_Site p.X49_splice 0.45 TCGA-VR-AA7D-01 3 66436586 66436586 G A LRIG1 Silent p.V536V 0.54 TCGA-VR-AA7D-01 3 98298944 98298944 G A CPOX 3'UTR 0.45 TCGA-VR-AA7D-01 4 144390657 144390657 C A GAB1 3'UTR 0.43 TCGA-VR-AA7D-01 4 41987702 41987702 A C DCAF4L1 3'UTR 0.33 TCGA-VR-AA7D-01 4 5016849 5016849 C T CYTL1 3'UTR 0.30 TCGA-VR-AA7D-01 4 81188197 81188197 C T FGF5 Silent p.G73G 0.28 TCGA-VR-AA7D-01 4 83784392 83784392 G C SEC31A Intron 0.37 TCGA-VR-AA7D-01 4 89571101 89571101 G A HERC3 Missense_Mutation p.D113N 0.36 tolerated(0.37) possibly_damaging(0.761) TCGA-VR-AA7D-01 5 141693705 141693705 T C SPRY4 3'UTR 0.33 TCGA-VR-AA7D-01 5 147281335 147281335 G C C5orf46 Missense_Mutation p.D24E 0.29 tolerated(0.25) possibly_damaging(0.621) TCGA-VR-AA7D-01 5 158635064 158635064 G A RNF145 Intron 0.21 TCGA-VR-AA7D-01 5 162932668 162932668 A T MAT2B 5'UTR 0.36 TCGA-VR-AA7D-01 5 32125003 32125003 T C GOLPH3 3'UTR 0.27 TCGA-VR-AA7D-01 5 38945607 38945607 A T RICTOR Missense_Mutation p.I1540K 0.30 tolerated(0.35) benign(0.014) TCGA-VR-AA7D-01 5 5057902 5057902 T C LINC01020 RNA 0.36 TCGA-VR-AA7D-01 5 65000152 65000152 G C SGTB Missense_Mutation p.Q110E 0.33 tolerated(0.18) benign(0.007) TCGA-VR-AA7D-01 6 106960342 106960342 C T AIM1 Silent p.D42D 0.06 TCGA-VR-AA7D-01 6 108497939 108497939 C A NR2E1 Silent p.P164P 0.25 TCGA-VR-AA7D-01 6 109005360 109005360 C T FOXO3 3'UTR 0.17 TCGA-VR-AA7D-01 6 112392560 112392560 G A TUBE1 3'UTR 0.32 TCGA-VR-AA7D-01 6 11768590 11768590 G T ADTRP Silent p.V78V 0.31 TCGA-VR-AA7D-01 6 135376037 135376037 G A HBS1L 5'Flank 0.53 TCGA-VR-AA7D-01 6 143457998 143457998 C G AIG1 Missense_Mutation p.I56M 0.47 deleterious(0) possibly_damaging(0.768) TCGA-VR-AA7D-01 6 159457656 159457656 C T TAGAP Missense_Mutation p.A467T 0.30 tolerated(0.37) benign(0.007) TCGA-VR-AA7D-01 6 163989702 163989702 A G QKI Intron 0.37 TCGA-VR-AA7D-01 6 30041253 30041253 A G RNF39 Silent p.D190D 0.28 TCGA-VR-AA7D-01 6 31795547 31795547 C T HSPA1B 5'UTR 0.64 TCGA-VR-AA7D-01 6 96663051 96663051 G A FUT9 3'UTR 0.05 TCGA-VR-AA7D-01 6 99881193 99881193 T C USP45 3'UTR 0.31 TCGA-VR-AA7D-01 7 135613632 135613632 G A MTPN 3'UTR 0.09 TCGA-VR-AA7D-01 7 143632543 143632543 A T OR2F2 Missense_Mutation p.Y73F 0.58 tolerated(0.44) probably_damaging(0.973) TCGA-VR-AA7D-01 7 151878602 151878602 C A KMT2C Missense_Mutation p.A2115S 0.44 benign(0.05) TCGA-VR-AA7D-01 7 23684068 23684068 G A CCDC126 3'UTR 0.29 TCGA-VR-AA7D-01 7 56067716 56067717 - T GBAS 3'UTR 0.17 TCGA-VR-AA7D-01 7 65546811 65546811 C T ASL Missense_Mutation p.R12W 0.43 deleterious(0) probably_damaging(1) TCGA-VR-AA7D-01 8 10468842 10468842 C A RP1L1 Silent p.L922L 0.60 TCGA-VR-AA7D-01 8 51617179 51617179 G A SNTG1 Missense_Mutation p.R353Q 0.28 tolerated(0.89) benign(0) TCGA-VR-AA7D-01 8 59506838 59506838 C A NSMAF Missense_Mutation p.G666V 0.19 tolerated(0.06) probably_damaging(0.997) TCGA-VR-AA7D-01 9 123165255 123165255 C G CDK5RAP2 Silent p.L1712L 0.39 TCGA-VR-AA7D-01 9 123688278 123688278 C T TRAF1 Missense_Mutation p.V26I 0.35 tolerated(1) benign(0) TCGA-VR-AA7D-01 9 137968928 137968928 G T OLFM1 Intron 0.85 TCGA-VR-AA7D-01 9 139888246 139888246 G A C9orf142 Missense_Mutation p.D202N 0.32 deleterious(0) probably_damaging(0.949) TCGA-VR-AA7D-01 9 90503589 90503589 G C SPATA31E1 Missense_Mutation p.R1396T 0.06 deleterious(0.02) possibly_damaging(0.661) TCGA-VR-AA7D-01 X 125685998 125685998 G A DCAF12L1 Silent p.F198F 0.67 TCGA-VR-AA7I-01 10 127548228 127548228 C T DHX32 Missense_Mutation p.E265K 0.10 deleterious(0.01) possibly_damaging(0.611) TCGA-VR-AA7I-01 10 75405286 75405286 A C SYNPO2L 3'UTR 0.33 TCGA-VR-AA7I-01 10 86273532 86273532 C G CCSER2 3'UTR 0.29 TCGA-VR-AA7I-01 10 94113635 94113635 C G MARCH5 3'UTR 0.25 TCGA-VR-AA7I-01 10 98760861 98760861 G T SLIT1 3'UTR 0.16 TCGA-VR-AA7I-01 11 113295305 113295305 G A DRD2 Silent p.N23N 0.14 TCGA-VR-AA7I-01 11 5020730 5020730 G A OR51L1 Missense_Mutation p.G173D 0.36 tolerated(0.11) benign(0.004) TCGA-VR-AA7I-01 11 55944718 55944718 G A OR5J2 Missense_Mutation p.A209T 0.13 tolerated(0.41) benign(0.014) TCGA-VR-AA7I-01 11 57004575 57004575 G A APLNR 5'UTR 0.11 TCGA-VR-AA7I-01 11 83170085 83170085 C G DLG2 3'UTR 0.31 TCGA-VR-AA7I-01 11 86056753 86056753 A G C11orf73 3'UTR 0.49 TCGA-VR-AA7I-01 12 11138694 11138694 G A TAS2R50 Missense_Mutation p.R256W 0.18 deleterious(0) benign(0.001) TCGA-VR-AA7I-01 12 132811451 132811451 G A GALNT9 Silent p.H101H 0.24 TCGA-VR-AA7I-01 12 133780251 133780251 G A ZNF268 Missense_Mutation p.G660E 0.17 tolerated(0.11) benign(0.2) TCGA-VR-AA7I-01 12 14650645 14650645 C G ATF7IP Missense_Mutation p.L1151V 0.24 deleterious_low_confidence(0.03) unknown(0) TCGA-VR-AA7I-01 12 42860064 42860064 C T PRICKLE1 Missense_Mutation p.R236H 0.29 tolerated(0.18) benign(0.072) TCGA-VR-AA7I-01 12 6128145 6128145 G A VWF Missense_Mutation p.P1480L 0.37 deleterious(0.04) probably_damaging(0.913) TCGA-VR-AA7I-01 12 69986782 69986782 C T CCT2 Silent p.D259D 0.32 TCGA-VR-AA7I-01 12 72024395 72024395 T C ZFC3H1 Missense_Mutation p.I1237V 0.31 tolerated(0.26) benign(0.004) TCGA-VR-AA7I-01 12 81627164 81627164 G A ACSS3 Missense_Mutation p.E545K 0.16 deleterious(0.04) benign(0.094) TCGA-VR-AA7I-01 12 91347661 91347661 C T CCER1 Missense_Mutation p.E287K 0.36 tolerated(0.07) possibly_damaging(0.486) TCGA-VR-AA7I-01 13 31232748 31232748 A G USPL1 Missense_Mutation p.H845R 0.62 tolerated(0.5) benign(0.008) TCGA-VR-AA7I-01 13 38211399 38211399 G T TRPC4 Missense_Mutation p.Q864K 0.41 tolerated_low_confidence(0.89) benign(0.023) TCGA-VR-AA7I-01 13 67802560 67802560 C T PCDH9 Missense_Mutation p.D5N 0.30 tolerated(0.47) benign(0.056) TCGA-VR-AA7I-01 13 98044732 98044732 A - MBNL2 3'UTR 0.17 TCGA-VR-AA7I-01 14 38725073 38725073 T G CLEC14A Missense_Mutation p.E52A 0.26 tolerated(0.08) possibly_damaging(0.557) TCGA-VR-AA7I-01 14 42356936 42356936 G T LRFN5 Missense_Mutation p.V370L 0.59 deleterious(0) benign(0.395) TCGA-VR-AA7I-01 14 53238879 53238879 A G STYX 3'UTR 0.56 TCGA-VR-AA7I-01 14 78018491 78018491 C T SPTLC2 Silent p.E417E 0.15 TCGA-VR-AA7I-01 15 101591974 101591974 G T LRRK1 Silent p.P1166P 0.36 TCGA-VR-AA7I-01 15 48065596 48065596 A G SEMA6D 3'UTR 0.31 TCGA-VR-AA7I-01 15 49867238 49867238 G A FAM227B Silent p.S205S 0.12 TCGA-VR-AA7I-01 15 66821208 66821208 G A ZWILCH Missense_Mutation p.A330T 0.20 tolerated(0.08) benign(0.053) TCGA-VR-AA7I-01 15 69561944 69561944 A G GLCE 3'UTR 0.10 TCGA-VR-AA7I-01 15 75763081 75763081 A T PTPN9 Missense_Mutation p.N433K 0.15 deleterious(0.02) probably_damaging(0.913) TCGA-VR-AA7I-01 16 3063367 3063367 G A CLDN9 Missense_Mutation p.A2T 0.43 deleterious(0.05) probably_damaging(0.931) TCGA-VR-AA7I-01 16 50334726 50334726 G A ADCY7 Missense_Mutation p.D393N 0.28 deleterious(0) probably_damaging(1) TCGA-VR-AA7I-01 16 57074572 57074572 C A NLRC5 Missense_Mutation p.L961I 0.15 tolerated(0.16) benign(0.339) TCGA-VR-AA7I-01 16 70696512 70696512 C A FLJ00418 5'UTR 0.44 TCGA-VR-AA7I-01 16 84070482 84070482 G A SLC38A8 Silent p.S71S 0.21 TCGA-VR-AA7I-01 16 89777128 89777128 T C VPS9D1 Missense_Mutation p.D375G 0.28 tolerated(0.23) possibly_damaging(0.58) TCGA-VR-AA7I-01 17 10307898 10307898 C A MYH8 Missense_Mutation p.A813S 0.38 tolerated(0.82) benign(0.002) TCGA-VR-AA7I-01 17 14140173 14140173 A G CDRT15 5'Flank 0.61 TCGA-VR-AA7I-01 17 30817544 30817544 C G CDK5R1 3'UTR 0.19 TCGA-VR-AA7I-01 17 34956684 34956684 C T DHRS11 3'UTR 0.18 TCGA-VR-AA7I-01 17 35736300 35736300 G C C17orf78 Missense_Mutation p.G124A 0.26 deleterious(0.02) possibly_damaging(0.807) TCGA-VR-AA7I-01 17 39740153 39740165 GCCTCTCAGGGCA - KRT14 Frame_Shift_Del p.A259Rfs*18 0.19 TCGA-VR-AA7I-01 17 40720545 40720545 G T MLX Missense_Mutation p.G100V 0.27 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7I-01 17 59560599 59560599 C T TBX4 Missense_Mutation p.R454W 0.47 deleterious(0) probably_damaging(0.997) TCGA-VR-AA7I-01 17 61910294 61910294 G A SMARCD2 3'UTR 0.29 TCGA-VR-AA7I-01 17 61910295 61910295 C A SMARCD2 3'UTR 0.29 TCGA-VR-AA7I-01 17 7578478 7578478 G T TP53 Missense_Mutation p.P151H 0.25 deleterious(0) possibly_damaging(0.773) TCGA-VR-AA7I-01 17 77021988 77021988 T C C1QTNF1 Intron 0.05 TCGA-VR-AA7I-01 17 7749410 7749410 G C KDM6B Missense_Mutation p.R84T 0.31 unknown(0) TCGA-VR-AA7I-01 17 9615292 9615292 C T USP43 Silent p.T726T 0.26 TCGA-VR-AA7I-01 18 29709647 29709647 G T RNF138 3'UTR 0.29 TCGA-VR-AA7I-01 18 29709648 29709648 C T RNF138 3'UTR 0.29 TCGA-VR-AA7I-01 18 58038634 58038634 T A MC4R Missense_Mutation p.I317F 0.53 tolerated(0.36) benign(0.08) TCGA-VR-AA7I-01 18 9931846 9931846 G T VAPA Missense_Mutation p.R40L 0.42 tolerated(0.2) benign(0.06) TCGA-VR-AA7I-01 19 18679911 18679911 A G KXD1 3'UTR 0.33 TCGA-VR-AA7I-01 19 21106139 21106139 T C ZNF85 5'UTR 0.16 TCGA-VR-AA7I-01 19 42355790 42355790 C T DMRTC2 3'UTR 0.09 TCGA-VR-AA7I-01 19 49693513 49693513 A T TRPM4 Missense_Mutation p.I690F 0.17 deleterious(0.02) possibly_damaging(0.796) TCGA-VR-AA7I-01 19 49979702 49979702 G A FLT3LG Nonsense_Mutation p.W74* 0.39 TCGA-VR-AA7I-01 19 51189602 51189602 G A SHANK1 Silent p.D823D 0.32 TCGA-VR-AA7I-01 19 53571447 53571448 - A ZNF160 Frame_Shift_Ins p.M780Ifs*13 0.23 TCGA-VR-AA7I-01 19 56204348 56204348 G C EPN1 Missense_Mutation p.E489D 0.20 tolerated(0.49) possibly_damaging(0.487) TCGA-VR-AA7I-01 19 57802649 57802649 A T ZNF460 Missense_Mutation p.N247I 0.49 deleterious(0) benign(0.281) TCGA-VR-AA7I-01 19 58371221 58371221 A G ZNF587 Missense_Mutation p.I481V 0.42 tolerated(0.28) benign(0.394) TCGA-VR-AA7I-01 19 7966108 7966108 C A LRRC8E 3'UTR 0.56 TCGA-VR-AA7I-01 19 9065422 9065423 - A MUC16 Frame_Shift_Ins p.T7342Yfs*32 0.32 TCGA-VR-AA7I-01 1 104234015 104234015 C T AMY1B Silent p.R334R 0.11 TCGA-VR-AA7I-01 1 146633344 146633344 G A PRKAB2 Missense_Mutation p.L230F 0.42 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7I-01 1 155717813 155717813 C A GON4L 3'Flank 0.28 TCGA-VR-AA7I-01 1 157740416 157740416 T C FCRL2 Silent p.G31G 0.28 TCGA-VR-AA7I-01 1 166825867 166825867 A G TADA1 3'UTR 0.33 TCGA-VR-AA7I-01 1 176926901 176926901 C A ASTN1 Silent p.P600P 0.30 TCGA-VR-AA7I-01 1 178000792 178000792 G A RP11-568K15.1 RNA 0.27 TCGA-VR-AA7I-01 1 184594863 184594863 A G C1orf21 3'UTR 0.45 TCGA-VR-AA7I-01 1 18809788 18809788 T C KLHDC7A Silent p.D771D 0.11 TCGA-VR-AA7I-01 1 227178477 227178477 A G CDC42BPA 3'UTR 0.26 TCGA-VR-AA7I-01 1 229644018 229644018 G A NUP133 5'UTR 0.19 TCGA-VR-AA7I-01 1 237947228 237947228 G A RYR2 Silent p.T4072T 0.13 TCGA-VR-AA7I-01 1 33240253 33240254 TA - KIAA1522 3'UTR 0.32 TCGA-VR-AA7I-01 1 35228281 35228281 G A GJB4 3'UTR 0.28 TCGA-VR-AA7I-01 1 42921632 42921632 G A ZMYND12 Missense_Mutation p.R13C 0.31 tolerated(0.09) probably_damaging(0.951) TCGA-VR-AA7I-01 1 55595244 55595244 G A USP24 Silent p.L1181L 0.14 TCGA-VR-AA7I-01 1 70385205 70385205 C T LRRC7 Intron 0.17 TCGA-VR-AA7I-01 1 70716908 70716908 A G SRSF11 3'UTR 0.28 TCGA-VR-AA7I-01 1 8397968 8397968 G A SLC45A1 Missense_Mutation p.E564K 0.08 tolerated(0.07) benign(0.397) TCGA-VR-AA7I-01 1 85499887 85499887 G T MCOLN3 Missense_Mutation p.N148K 0.17 tolerated(0.73) benign(0) TCGA-VR-AA7I-01 1 86900239 86900239 A C CLCA2 Missense_Mutation p.E261D 0.34 deleterious(0.05) probably_damaging(0.999) TCGA-VR-AA7I-01 20 29614264 29614264 G A FRG1B Splice_Site 0.11 TCGA-VR-AA7I-01 20 37650518 37650518 C T DHX35 Silent p.I511I 0.15 TCGA-VR-AA7I-01 20 50221436 50221436 C A ATP9A Missense_Mutation p.W976L 0.22 deleterious(0) possibly_damaging(0.885) TCGA-VR-AA7I-01 20 62421604 62421604 C T ZBTB46 Silent p.P169P 0.24 TCGA-VR-AA7I-01 21 47423346 47423346 G A COL6A1 Missense_Mutation p.G836S 0.75 tolerated(1) benign(0.086) TCGA-VR-AA7I-01 22 16449141 16449141 T A OR11H1 Missense_Mutation p.I222F 0.16 deleterious(0) probably_damaging(0.925) TCGA-VR-AA7I-01 22 20077713 20077713 C T DGCR8 Missense_Mutation p.A413V 0.21 tolerated(0.38) benign(0.013) TCGA-VR-AA7I-01 22 24086011 24086011 C A ZNF70 Missense_Mutation p.K439N 0.25 deleterious(0) possibly_damaging(0.522) TCGA-VR-AA7I-01 22 50637604 50637604 C T TRABD 3'UTR 0.28 TCGA-VR-AA7I-01 22 50885850 50885850 C T SBF1 Silent p.E1828E 0.24 TCGA-VR-AA7I-01 2 103378750 103378750 T G TMEM182 Missense_Mutation p.F25C 0.47 tolerated(0.07) probably_damaging(0.963) TCGA-VR-AA7I-01 2 109086172 109086172 A G GCC2 Silent p.K129K 0.33 TCGA-VR-AA7I-01 2 110970017 110970017 C T LINC00116 RNA 0.32 TCGA-VR-AA7I-01 2 119600737 119600737 T G EN1 Missense_Mutation p.K319T 0.38 deleterious(0) possibly_damaging(0.753) TCGA-VR-AA7I-01 2 148686474 148686474 A T ACVR2A 3'UTR 0.21 TCGA-VR-AA7I-01 2 155712210 155712210 A G KCNJ3 3'UTR 0.24 TCGA-VR-AA7I-01 2 165548881 165548881 C G COBLL1 Missense_Mutation p.Q1088H 0.15 deleterious(0.03) benign(0.194) TCGA-VR-AA7I-01 2 168107984 168107984 A C XIRP2 Missense_Mutation p.N3361T 0.14 benign(0.135) TCGA-VR-AA7I-01 2 174939494 174939494 T C OLA1 3'UTR 0.38 TCGA-VR-AA7I-01 2 179456788 179456788 A G TTN Missense_Mutation p.L19948P 0.19 TCGA-VR-AA7I-01 2 179482140 179482140 A G TTN Missense_Mutation p.I15891T 0.25 TCGA-VR-AA7I-01 2 200135821 200135821 A C SATB2 3'UTR 0.12 TCGA-VR-AA7I-01 2 204738398 204738398 A G CTLA4 3'UTR 0.57 TCGA-VR-AA7I-01 2 210594936 210594936 C T MAP2 Missense_Mutation p.H1767Y 0.24 deleterious(0) probably_damaging(0.943) TCGA-VR-AA7I-01 2 242003535 242003535 C A SNED1 Nonsense_Mutation p.C864* 0.28 TCGA-VR-AA7I-01 2 25610220 25610220 A T DTNB Missense_Mutation p.L588Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7I-01 2 31147091 31147091 C T GALNT14 Missense_Mutation p.R430Q 0.12 tolerated(0.31) possibly_damaging(0.821) TCGA-VR-AA7I-01 2 48023133 48023134 - AAGAG MSH6 Frame_Shift_Ins p.I188Rfs*25 0.22 TCGA-VR-AA7I-01 2 71906280 71906280 A C DYSF Missense_Mutation p.E1993A 0.10 tolerated(0.64) benign(0.012) TCGA-VR-AA7I-01 2 87201286 87201286 A C RGPD1 Missense_Mutation p.K447T 0.10 tolerated(0.06) benign(0.249) TCGA-VR-AA7I-01 3 122247052 122247065 ACTAAGATGCTAGT - PARP9 3'UTR 0.39 TCGA-VR-AA7I-01 3 147132126 147132126 G A ZIC1 3'UTR 0.16 TCGA-VR-AA7I-01 3 153973619 153973619 G C ARHGEF26 3'UTR 0.82 TCGA-VR-AA7I-01 3 164906571 164906571 C T SLITRK3 Missense_Mutation p.R683Q 0.47 tolerated(0.11) benign(0.032) TCGA-VR-AA7I-01 3 182586882 182586883 - T ATP11B Frame_Shift_Ins p.L570Sfs*4 0.12 TCGA-VR-AA7I-01 3 32409471 32409471 G T CMTM8 Silent p.A143A 0.54 TCGA-VR-AA7I-01 3 33686848 33686848 C T CLASP2 Intron 0.38 TCGA-VR-AA7I-01 3 35763159 35763159 T G ARPP21 Missense_Mutation p.L319R 0.47 deleterious(0.01) possibly_damaging(0.777) TCGA-VR-AA7I-01 3 51976714 51976714 G C PARP3 Silent p.L3L 0.33 TCGA-VR-AA7I-01 3 56681036 56681036 G A FAM208A Missense_Mutation p.P577S 0.43 tolerated(0.32) benign(0.007) TCGA-VR-AA7I-01 3 64085307 64085307 C T PRICKLE2 Missense_Mutation p.S652N 0.15 tolerated(1) benign(0.001) TCGA-VR-AA7I-01 4 101331439 101331439 G A EMCN Intron 0.32 TCGA-VR-AA7I-01 4 103747741 103747741 G T UBE2D3 Intron 0.16 TCGA-VR-AA7I-01 4 110384393 110384393 A T SEC24B Missense_Mutation p.N157I 0.52 deleterious_low_confidence(0) possibly_damaging(0.51) TCGA-VR-AA7I-01 4 111539588 111539588 G C PITX2 Missense_Mutation p.S223C 0.54 deleterious(0.02) probably_damaging(0.997) TCGA-VR-AA7I-01 5 156592876 156592876 A G FAM71B Missense_Mutation p.W102R 0.46 tolerated(0.57) benign(0) TCGA-VR-AA7I-01 5 15928102 15928102 G A FBXL7 Silent p.S77S 0.12 TCGA-VR-AA7I-01 5 161317917 161317917 T G GABRA1 Silent p.V239V 0.43 TCGA-VR-AA7I-01 5 36035772 36035772 A G UGT3A2 3'UTR 0.40 TCGA-VR-AA7I-01 5 90144561 90144561 C T GPR98 Silent p.F5709F 0.12 TCGA-VR-AA7I-01 6 127911258 127911258 C T C6orf58 Missense_Mutation p.A234V 0.12 tolerated(0.08) benign(0.046) TCGA-VR-AA7I-01 6 136599485 136599485 C T BCLAF1 Silent p.P178P 0.09 TCGA-VR-AA7I-01 6 157527315 157527315 C T ARID1B Silent p.L1680L 0.19 TCGA-VR-AA7I-01 6 159653105 159653105 C A FNDC1 Silent p.R521R 0.17 TCGA-VR-AA7I-01 6 160577066 160577066 G A SLC22A1 Missense_Mutation p.A520T 0.31 tolerated(0.54) benign(0.021) TCGA-VR-AA7I-01 6 170190213 170190213 G A LINC00242 RNA 0.10 TCGA-VR-AA7I-01 6 30530332 30530332 C A PRR3 3'UTR 0.32 TCGA-VR-AA7I-01 6 31122453 31122453 C G CCHCR1 Missense_Mutation p.Q207H 0.32 deleterious(0) probably_damaging(0.999) TCGA-VR-AA7I-01 6 33218515 33218515 C A VPS52 3'UTR 0.40 TCGA-VR-AA7I-01 6 38854597 38854597 G T DNAH8 Nonsense_Mutation p.E2547* 0.26 TCGA-VR-AA7I-01 6 44221086 44221086 G A HSP90AB1 Missense_Mutation p.R679H 0.18 deleterious(0.01) probably_damaging(0.991) TCGA-VR-AA7I-01 6 55266676 55266676 A G GFRAL 3'UTR 0.29 TCGA-VR-AA7I-01 6 83732251 83732251 T C UBE3D Missense_Mutation p.Q256R 0.30 tolerated(0.23) benign(0.02) TCGA-VR-AA7I-01 6 97578788 97578788 T C KLHL32 Silent p.T523T 0.21 TCGA-VR-AA7I-01 7 102940749 102940749 C T PMPCB Missense_Mutation p.P151L 0.11 deleterious(0) possibly_damaging(0.873) TCGA-VR-AA7I-01 7 106797765 106797765 T - PRKAR2B Frame_Shift_Del p.L374* 0.19 TCGA-VR-AA7I-01 7 134719125 134719125 C G AGBL3 Missense_Mutation p.D261E 0.27 tolerated(0.26) benign(0.044) TCGA-VR-AA7I-01 7 20452349 20452349 G A ITGB8 3'UTR 0.34 TCGA-VR-AA7I-01 7 2274620 2274620 G A FTSJ2 3'UTR 0.25 TCGA-VR-AA7I-01 7 2565180 2565180 G T LFNG Missense_Mutation p.E238D 0.22 tolerated(0.1) benign(0.147) TCGA-VR-AA7I-01 7 80427447 80427447 A G SEMA3C Silent p.I364I 0.45 TCGA-VR-AA7I-01 8 109498839 109498839 C G EMC2 3'UTR 0.15 TCGA-VR-AA7I-01 8 113314147 113314147 C T CSMD3 Missense_Mutation p.G2772E 0.16 deleterious(0.02) probably_damaging(0.994) TCGA-VR-AA7I-01 8 124658211 124658211 G A KLHL38 Missense_Mutation p.A505V 0.21 deleterious(0.01) possibly_damaging(0.557) TCGA-VR-AA7I-01 8 33342693 33342693 G C MAK16 5'UTR 0.14 TCGA-VR-AA7I-01 9 101818559 101818559 A C COL15A1 Silent p.T1070T 0.67 TCGA-VR-AA7I-01 9 104183929 104183929 A G ALDOB 3'UTR 0.27 TCGA-VR-AA7I-01 9 108147756 108147756 C T SLC44A1 Silent p.V641V 0.58 TCGA-VR-AA7I-01 9 112706118 112706118 C T PALM2 3'Flank 0.47 TCGA-VR-AA7I-01 9 35101143 35101143 T C STOML2 Missense_Mutation p.N238S 0.32 deleterious(0.02) possibly_damaging(0.897) TCGA-VR-AA7I-01 9 39073896 39073899 TTCT - CNTNAP3 Frame_Shift_Del p.E1286Sfs*26 0.22 TCGA-VR-AA7I-01 9 95481107 95481107 G A BICD2 Missense_Mutation p.P607L 0.53 tolerated(0.08) possibly_damaging(0.454) TCGA-VR-AA7I-01 X 122318472 122318472 G T GRIA3 Nonsense_Mutation p.G29* 0.50 TCGA-VR-AA7I-01 X 125685222 125685222 T C DCAF12L1 Missense_Mutation p.N457S 0.53 deleterious(0.02) benign(0.303) TCGA-VR-AA7I-01 X 127186302 127186302 T A ACTRT1 5'UTR 0.61 TCGA-VR-AA7I-01 X 140994796 140994796 C T MAGEC1 Missense_Mutation p.L536F 0.54 tolerated_low_confidence(0.27) possibly_damaging(0.587) TCGA-VR-AA7I-01 X 30261127 30261127 T G MAGEB4 Missense_Mutation p.V292G 0.29 deleterious(0) probably_damaging(0.944) TCGA-VR-AA7I-01 X 34646085 34646086 - A TMEM47 3'UTR 0.31 TCGA-VR-AA7I-01 X 70612774 70612774 C A TAF1 Missense_Mutation p.A1014E 0.34 deleterious(0) probably_damaging(0.987) TCGA-X8-AAAR-01 10 107024705 107024705 T C SORCS3 3'UTR 0.45 TCGA-X8-AAAR-01 10 116048899 116048899 G A VWA2 Silent p.R591R 0.24 TCGA-X8-AAAR-01 10 117706510 117706510 G A ATRNL1 3'UTR 0.38 TCGA-X8-AAAR-01 10 118236283 118236283 A C PNLIPRP3 Missense_Mutation p.K431T 0.33 tolerated(0.2) benign(0.05) TCGA-X8-AAAR-01 10 133948604 133948604 T A JAKMIP3 Missense_Mutation p.S303R 0.35 deleterious(0.05) benign(0.408) TCGA-X8-AAAR-01 10 27827137 27827137 G A RAB18 3'UTR 0.22 TCGA-X8-AAAR-01 10 61005364 61005364 T G PHYHIPL 3'UTR 0.45 TCGA-X8-AAAR-01 10 70673227 70673227 G A DDX50 Missense_Mutation p.D280N 0.32 tolerated(0.13) benign(0.147) TCGA-X8-AAAR-01 10 92508753 92508753 T A HTR7 Missense_Mutation p.N380Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-X8-AAAR-01 11 10773002 10773002 G A CTR9 Missense_Mutation p.E15K 0.28 deleterious(0) possibly_damaging(0.698) TCGA-X8-AAAR-01 11 10787949 10787949 G A CTR9 Missense_Mutation p.C533Y 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-X8-AAAR-01 11 118452049 118452049 G A ARCN1 Missense_Mutation p.G31D 0.50 deleterious(0) probably_damaging(0.999) TCGA-X8-AAAR-01 11 120776197 120776197 G A GRIK4 Missense_Mutation p.A491T 0.33 tolerated(0.2) benign(0.005) TCGA-X8-AAAR-01 11 18158962 18158962 C T MRGPRX3 Silent p.A71A 0.46 TCGA-X8-AAAR-01 11 25103819 25103819 A C LUZP2 3'Flank 0.50 TCGA-X8-AAAR-01 11 3658509 3658509 C T ART5 3'Flank 0.30 TCGA-X8-AAAR-01 11 43283424 43283424 C T HNRNPKP3 RNA 0.38 TCGA-X8-AAAR-01 11 5020651 5020651 G T OR51L1 Missense_Mutation p.G147C 0.32 deleterious(0) probably_damaging(0.938) TCGA-X8-AAAR-01 11 55339899 55339899 T C OR4C16 Missense_Mutation p.V99A 0.35 deleterious(0.01) possibly_damaging(0.529) TCGA-X8-AAAR-01 11 6291951 6291951 C A CCKBR Silent p.R243R 0.26 TCGA-X8-AAAR-01 11 67265453 67265453 C T PITPNM1 Missense_Mutation p.D573N 0.29 deleterious(0.02) probably_damaging(0.993) TCGA-X8-AAAR-01 11 67789291 67789293 CGG TGGC ALDH3B1 Missense_Mutation 0.26 TCGA-X8-AAAR-01 11 8125109 8125109 G A TUB 3'UTR 0.12 TCGA-X8-AAAR-01 11 89896509 89896509 C T NAALAD2 Silent p.D369D 0.32 TCGA-X8-AAAR-01 12 104382366 104382366 G A TDG 3'UTR 0.11 TCGA-X8-AAAR-01 12 120652004 120652004 A T PXN Missense_Mutation p.L446H 0.56 deleterious(0) probably_damaging(0.993) TCGA-X8-AAAR-01 12 123746243 123746243 C T CDK2AP1 3'UTR 0.27 TCGA-X8-AAAR-01 12 131274374 131274374 C A STX2 3'Flank 0.67 TCGA-X8-AAAR-01 12 31944230 31944230 A T H3F3C 3'UTR 0.02 TCGA-X8-AAAR-01 12 32145896 32145896 A C KIAA1551 3'UTR 0.12 TCGA-X8-AAAR-01 12 3747573 3747573 G A EFCAB4B Missense_Mutation p.S440F 0.49 deleterious(0) probably_damaging(0.975) TCGA-X8-AAAR-01 12 40939777 40939777 A C MUC19 3'UTR 0.40 TCGA-X8-AAAR-01 12 58007066 58007066 C A ARHGEF25 Missense_Mutation p.A150D 0.50 tolerated(0.28) benign(0.265) TCGA-X8-AAAR-01 12 6664974 6664974 G C IFFO1 Missense_Mutation p.I74M 0.67 deleterious(0) probably_damaging(0.996) TCGA-X8-AAAR-01 12 7640477 7640477 C T CD163 Missense_Mutation p.E543K 0.41 tolerated(0.07) probably_damaging(1) TCGA-X8-AAAR-01 12 80890208 80890208 T G PTPRQ Missense_Mutation p.L720V 0.43 deleterious(0) probably_damaging(0.926) TCGA-X8-AAAR-01 13 100623848 100623848 G T ZIC5 Missense_Mutation p.P28T 0.36 tolerated(0.06) unknown(0) TCGA-X8-AAAR-01 13 109318471 109318471 C T MYO16 Missense_Mutation p.A67V 0.12 deleterious(0.02) probably_damaging(1) TCGA-X8-AAAR-01 13 37014283 37014283 G A CCNA1 Missense_Mutation p.R354Q 0.27 tolerated(0.59) possibly_damaging(0.463) TCGA-X8-AAAR-01 13 46924468 46924468 C T KIAA0226L Missense_Mutation p.R450Q 0.39 deleterious(0) probably_damaging(0.993) TCGA-X8-AAAR-01 13 95056079 95056079 A G GPC6 3'UTR 0.21 TCGA-X8-AAAR-01 14 106757830 106757830 A G IGHV2-26 Silent p.R59R 0.42 TCGA-X8-AAAR-01 14 72936735 72936735 G C RGS6 Missense_Mutation p.Q160H 0.27 tolerated(0.1) benign(0.133) TCGA-X8-AAAR-01 14 88945689 88945689 C T PTPN21 Missense_Mutation p.G696S 0.36 tolerated_low_confidence(0.36) benign(0.023) TCGA-X8-AAAR-01 14 92054348 92054349 - ATTAT CATSPERB Frame_Shift_Ins p.P1011Ifs*8 0.27 TCGA-X8-AAAR-01 14 96138523 96138523 T C TCL6 RNA 0.41 TCGA-X8-AAAR-01 15 42743781 42743781 G A ZNF106 Missense_Mutation p.S207F 0.43 deleterious(0.02) benign(0.02) TCGA-X8-AAAR-01 15 44817890 44817890 A G CTDSPL2 3'UTR 0.54 TCGA-X8-AAAR-01 15 90760682 90760682 C T SEMA4B Missense_Mutation p.R57W 0.07 deleterious(0) probably_damaging(1) TCGA-X8-AAAR-01 16 31131726 31131726 C T KAT8 Missense_Mutation p.A118V 0.10 tolerated(0.4) benign(0.007) TCGA-X8-AAAR-01 16 48125076 48125076 C T ABCC12 Silent p.T1080T 0.35 TCGA-X8-AAAR-01 16 66887490 66887490 C T CA7 3'UTR 0.24 TCGA-X8-AAAR-01 16 70301615 70301615 C T AARS Missense_Mutation p.R390H 0.58 deleterious(0.03) probably_damaging(0.97) TCGA-X8-AAAR-01 16 78062018 78062018 C A CLEC3A Missense_Mutation p.L53M 0.29 deleterious(0.04) possibly_damaging(0.793) TCGA-X8-AAAR-01 16 89764175 89764175 G A SPATA2L Missense_Mutation p.P281L 0.44 tolerated(0.17) benign(0.031) TCGA-X8-AAAR-01 17 18022706 18022706 G A MYO15A Missense_Mutation p.A198T 0.70 possibly_damaging(0.711) TCGA-X8-AAAR-01 17 26116636 26116636 C T NOS2 Silent p.T63T 0.29 TCGA-X8-AAAR-01 17 39550305 39550305 C T KRT31 Missense_Mutation p.R405H 0.80 tolerated(0.21) possibly_damaging(0.662) TCGA-X8-AAAR-01 17 60689902 60689902 G A TLK2 Silent p.A743A 0.19 TCGA-X8-AAAR-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.47 TCGA-X8-AAAR-01 18 34802055 34802055 C T KIAA1328 Silent p.S533S 0.56 TCGA-X8-AAAR-01 18 65180269 65180269 A G DSEL Missense_Mutation p.L536P 0.56 deleterious(0) probably_damaging(0.996) TCGA-X8-AAAR-01 19 11918396 11918396 C T ZNF491 3'UTR 0.52 TCGA-X8-AAAR-01 19 18307991 18307991 G C RAB3A 3'UTR 0.21 TCGA-X8-AAAR-01 19 18882281 18882281 C T CRTC1 Silent p.S466S 0.27 TCGA-X8-AAAR-01 19 37310184 37310184 A G ZNF790 Silent p.T354T 0.34 TCGA-X8-AAAR-01 19 38189351 38189351 A G ZNF607 Missense_Mutation p.Y561H 0.31 deleterious(0.02) probably_damaging(0.928) TCGA-X8-AAAR-01 19 40328462 40328462 C A FBL Nonsense_Mutation p.E191* 0.42 TCGA-X8-AAAR-01 19 40738085 40738085 C T AKT2 3'UTR 0.26 TCGA-X8-AAAR-01 19 41354531 41354531 G A CYP2A6 Missense_Mutation p.R161W 0.04 benign(0.023) TCGA-X8-AAAR-01 19 43371556 43371556 A C PSG1 3'UTR 0.26 TCGA-X8-AAAR-01 19 53385026 53385026 T G ZNF320 Missense_Mutation p.K118T 0.37 tolerated(0.22) benign(0.096) TCGA-X8-AAAR-01 19 6901999 6901999 T G EMR1 Missense_Mutation p.L210V 0.31 tolerated(0.4) benign(0.021) TCGA-X8-AAAR-01 19 9067623 9067623 G A MUC16 Missense_Mutation p.S6608L 0.47 unknown(0) TCGA-X8-AAAR-01 1 111144720 111144720 A G KCNA2 3'UTR 0.35 TCGA-X8-AAAR-01 1 13717114 13717114 A G PRAMEF17 Missense_Mutation p.R201G 0.27 deleterious(0.01) benign(0.164) TCGA-X8-AAAR-01 1 149885042 149885042 C T SV2A Silent p.A117A 0.50 TCGA-X8-AAAR-01 1 154573584 154573584 C G ADAR Missense_Mutation p.A512P 0.45 deleterious(0) probably_damaging(0.949) TCGA-X8-AAAR-01 1 158985745 158985745 A C IFI16 Missense_Mutation p.T117P 0.41 tolerated(0.19) benign(0.1) TCGA-X8-AAAR-01 1 20141125 20141125 G A RNF186 Missense_Mutation p.A157V 0.26 tolerated(0.78) benign(0.035) TCGA-X8-AAAR-01 1 205890901 205890901 C T SLC26A9 Silent p.P616P 0.46 TCGA-X8-AAAR-01 1 213178473 213178473 T C ANGEL2 Missense_Mutation p.I346V 0.38 tolerated(0.73) benign(0.08) TCGA-X8-AAAR-01 1 226570793 226570793 G A PARP1 Missense_Mutation p.T368M 0.04 tolerated(0.1) benign(0.007) TCGA-X8-AAAR-01 1 230472897 230472897 G T PGBD5 Silent p.P275P 0.37 TCGA-X8-AAAR-01 1 234563510 234563510 A G TARBP1 Silent p.I1021I 0.25 TCGA-X8-AAAR-01 1 237580416 237580416 A C RYR2 Silent p.R281R 0.25 TCGA-X8-AAAR-01 1 240256708 240256708 G A FMN2 Silent p.P433P 0.34 TCGA-X8-AAAR-01 1 43166604 43166604 A T YBX1 Missense_Mutation p.Q298L 0.32 deleterious(0.03) possibly_damaging(0.901) TCGA-X8-AAAR-01 1 54387359 54387359 C T HSPB11 Missense_Mutation p.A134T 0.42 tolerated(0.05) possibly_damaging(0.895) TCGA-X8-AAAR-01 1 65693034 65693034 A G AK4 3'UTR 0.24 TCGA-X8-AAAR-01 1 75699775 75699775 G A SLC44A5 Missense_Mutation p.T250M 0.12 tolerated(0.12) possibly_damaging(0.473) TCGA-X8-AAAR-01 20 33447427 33447427 T C GGT7 Missense_Mutation p.E278G 0.27 tolerated(0.08) benign(0.122) TCGA-X8-AAAR-01 20 39983354 39983354 C T LPIN3 Missense_Mutation p.R533C 0.38 deleterious(0.04) benign(0.046) TCGA-X8-AAAR-01 20 40706651 40706651 C A PTPRT 3'UTR 0.27 TCGA-X8-AAAR-01 20 57036453 57036453 C T APCDD1L Missense_Mutation p.R300Q 0.35 deleterious(0) probably_damaging(0.998) TCGA-X8-AAAR-01 21 16338230 16338230 C A NRIP1 Missense_Mutation p.D762Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-X8-AAAR-01 21 39947585 39947585 C T ERG Splice_Site p.X13_splice 0.28 TCGA-X8-AAAR-01 21 45157092 45157092 T C PDXK Intron 0.36 TCGA-X8-AAAR-01 21 45158505 45158505 G A PDXK Intron 0.36 TCGA-X8-AAAR-01 21 45751827 45751828 CT - C21orf2 Frame_Shift_Del p.E148Gfs*21 0.59 TCGA-X8-AAAR-01 21 46021043 46021043 C T KRTAP10-7 Silent p.S174S 0.11 TCGA-X8-AAAR-01 21 47544826 47544826 G A COL6A2 Missense_Mutation p.G588S 0.24 deleterious(0.05) probably_damaging(1) TCGA-X8-AAAR-01 21 47786667 47786667 G A PCNT Silent p.A926A 0.27 TCGA-X8-AAAR-01 22 18845987 18845987 T A BCRP7 Intron 0.19 TCGA-X8-AAAR-01 22 32270317 32270317 G A DEPDC5 Missense_Mutation p.A1199T 0.33 deleterious(0.04) probably_damaging(0.933) TCGA-X8-AAAR-01 22 40731770 40731771 - AAAAAAG TNRC6B 3'UTR 0.14 TCGA-X8-AAAR-01 22 51159630 51159630 G T SHANK3 Silent p.A1139A 0.54 TCGA-X8-AAAR-01 22 51237176 51237176 C T RPL23AP82 RNA 0.26 TCGA-X8-AAAR-01 2 138414722 138414722 A C THSD7B Missense_Mutation p.N1459T 0.79 deleterious(0) unknown(0) TCGA-X8-AAAR-01 2 141607887 141607888 - T LRP1B Frame_Shift_Ins p.F1575Ifs*9 0.17 TCGA-X8-AAAR-01 2 160667040 160667040 G A LY75-CD302 Missense_Mutation p.H1566Y 0.68 tolerated(0.09) benign(0) TCGA-X8-AAAR-01 2 167289201 167289201 T C SCN7A Missense_Mutation p.E740G 0.66 deleterious(0) benign(0.367) TCGA-X8-AAAR-01 2 179634517 179634517 C A TTN Missense_Mutation p.V2931L 0.74 TCGA-X8-AAAR-01 2 179639844 179639844 A C TTN Silent p.T2198T 0.09 TCGA-X8-AAAR-01 2 20885504 20885504 G A C2orf43 3'UTR 0.12 TCGA-X8-AAAR-01 2 31467221 31467221 A G EHD3 Silent p.G103G 0.30 TCGA-X8-AAAR-01 2 69685684 69685684 C T RP11-427H3.3 RNA 0.34 TCGA-X8-AAAR-01 2 77746912 77746912 G A LRRTM4 Missense_Mutation p.T28M 0.40 tolerated(0.07) benign(0.099) TCGA-X8-AAAR-01 3 126062376 126062376 C T KLF15 3'UTR 0.56 TCGA-X8-AAAR-01 3 17052965 17052965 G C PLCL2 Silent p.L583L 0.58 TCGA-X8-AAAR-01 3 178560673 178560673 T G KCNMB2 Missense_Mutation p.L219R 0.68 deleterious(0) possibly_damaging(0.765) TCGA-X8-AAAR-01 3 52651338 52651338 C A PBRM1 Missense_Mutation p.M586I 0.47 tolerated(0.18) benign(0.196) TCGA-X8-AAAR-01 3 57391564 57391564 G A DNAH12 Missense_Mutation p.A2112V 0.09 tolerated(0.24) benign(0.278) TCGA-X8-AAAR-01 4 106317440 106317440 G A PPA2 Missense_Mutation p.L279F 0.32 deleterious(0) possibly_damaging(0.575) TCGA-X8-AAAR-01 4 110415842 110415842 G A SEC24B Missense_Mutation p.A440T 0.36 tolerated(0.31) benign(0.005) TCGA-X8-AAAR-01 4 11401465 11401465 C T HS3ST1 Silent p.P55P 0.20 TCGA-X8-AAAR-01 4 115898389 115898389 T C NDST4 Silent p.A340A 0.33 TCGA-X8-AAAR-01 4 126413960 126413960 A T FAT4 3'UTR 0.32 TCGA-X8-AAAR-01 4 139994616 139994616 C T ELF2 Missense_Mutation p.R115K 0.19 tolerated(0.4) benign(0.122) TCGA-X8-AAAR-01 4 15480941 15480941 A G CC2D2A Intron 0.25 TCGA-X8-AAAR-01 4 158074057 158074057 A C GLRB Missense_Mutation p.K364N 0.31 tolerated(0.15) possibly_damaging(0.562) TCGA-X8-AAAR-01 4 3242235 3242235 T C HTT 3'UTR 0.42 TCGA-X8-AAAR-01 4 68338006 68338006 T A CENPC 3'UTR 0.28 TCGA-X8-AAAR-01 5 128984637 128984637 T G ADAMTS19 Missense_Mutation p.L711R 0.62 tolerated(0.18) benign(0.066) TCGA-X8-AAAR-01 5 140250526 140250526 C T PCDHA11 Missense_Mutation p.A613V 0.68 tolerated_low_confidence(0.22) benign(0.036) TCGA-X8-AAAR-01 5 140531569 140531569 G A PCDHB6 Silent p.A577A 0.57 TCGA-X8-AAAR-01 5 148930593 148930593 G T CSNK1A1 5'Flank 0.46 TCGA-X8-AAAR-01 5 177697337 177697337 C T COL23A1 Splice_Site p.X156_splice 0.78 TCGA-X8-AAAR-01 5 42629169 42629169 T C GHR Missense_Mutation p.W34R 0.62 tolerated_low_confidence(0.64) benign(0.006) TCGA-X8-AAAR-01 5 53816356 53816356 T G SNX18 3'UTR 0.16 TCGA-X8-AAAR-01 5 56778129 56778129 C T ACTBL2 Missense_Mutation p.A136T 0.42 deleterious_low_confidence(0.02) possibly_damaging(0.857) TCGA-X8-AAAR-01 6 127796461 127796461 C T SOGA3 Missense_Mutation p.E904K 0.33 deleterious_low_confidence(0.01) benign(0.241) TCGA-X8-AAAR-01 6 146276380 146276380 C T SHPRH Missense_Mutation p.E27K 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.69) TCGA-X8-AAAR-01 6 152728318 152728318 A C SYNE1 Missense_Mutation p.L2185R 0.31 benign(0.177) TCGA-X8-AAAR-01 6 32153419 32153419 A C PBX2 3'UTR 0.43 TCGA-X8-AAAR-01 6 57467133 57467133 G C PRIM2 3'UTR 0.08 TCGA-X8-AAAR-01 6 64290611 64290611 C T PTP4A1 3'UTR 0.34 TCGA-X8-AAAR-01 7 107790554 107790554 C T NRCAM Missense_Mutation p.R1239Q 0.30 tolerated(0.93) possibly_damaging(0.742) TCGA-X8-AAAR-01 7 120389666 120389666 T G KCND2 3'UTR 0.37 TCGA-X8-AAAR-01 7 129122851 129122851 C T STRIP2 Missense_Mutation p.R740C 0.35 deleterious(0) probably_damaging(0.993) TCGA-X8-AAAR-01 7 134653465 134653465 G A CALD1 3'UTR 0.46 TCGA-X8-AAAR-01 7 136700655 136700655 G C CHRM2 Missense_Mutation p.G348A 0.24 tolerated(1) benign(0.314) TCGA-X8-AAAR-01 7 23183545 23183545 A G KLHL7 Missense_Mutation p.K232E 0.06 tolerated(0.2) benign(0.321) TCGA-X8-AAAR-01 7 3681696 3681696 T G SDK1 Silent p.T224T 0.39 TCGA-X8-AAAR-01 7 38468079 38468079 T G AMPH Intron 0.33 TCGA-X8-AAAR-01 7 5410472 5410472 G A TNRC18 Silent p.P1251P 0.35 TCGA-X8-AAAR-01 8 104922598 104922598 G A RIMS2 Intron 0.31 TCGA-X8-AAAR-01 8 2021504 2021504 C T MYOM2 Silent p.D348D 0.44 TCGA-X8-AAAR-01 8 2876172 2876172 A C CSMD1 Missense_Mutation p.V2619G 0.19 benign(0.283) TCGA-X8-AAAR-01 8 53446937 53446937 C T FAM150A 3'UTR 0.25 TCGA-X8-AAAR-01 8 56652587 56652587 T A TMEM68 3'UTR 0.36 TCGA-X8-AAAR-01 9 124329506 124329506 C T DAB2IP Silent p.Y13Y 0.17 TCGA-X8-AAAR-01 9 133779538 133779538 G A FIBCD1 Silent p.D433D 0.14 TCGA-X8-AAAR-01 9 135933335 135933335 G A GTF3C5 Missense_Mutation p.E517K 0.58 deleterious(0) probably_damaging(0.999) TCGA-X8-AAAR-01 9 84533920 84533920 C T SPATA31D5P RNA 0.09 TCGA-X8-AAAR-01 X 112020096 112020096 C T AMOT 3'UTR 0.81 TCGA-X8-AAAR-01 X 122536894 122536894 G A GRIA3 Missense_Mutation p.R377H 0.75 tolerated(0.25) benign(0.222) TCGA-X8-AAAR-01 X 125685285 125685285 T G DCAF12L1 Missense_Mutation p.Y436S 0.75 deleterious(0) probably_damaging(0.999) TCGA-X8-AAAR-01 X 133700357 133700358 - G PLAC1 Frame_Shift_Ins p.Q119Pfs*26 0.33 TCGA-X8-AAAR-01 X 140714827 140714827 A C RP1-171K16.5 RNA 0.75 TCGA-X8-AAAR-01 X 1501521 1501523 GAA - IL3RA 3'UTR 0.32 TCGA-X8-AAAR-01 X 63005070 63005070 G A MIR1468 3'Flank 0.49 TCGA-X8-AAAR-01 X 83128459 83128459 T A CYLC1 Missense_Mutation p.L248H 0.67 deleterious(0) probably_damaging(0.938) TCGA-X8-AAAR-01 X 90690686 90690686 A C PABPC5 Missense_Mutation p.K37T 0.58 tolerated(0.07) probably_damaging(1) TCGA-XP-A8T6-01 10 63188874 63188874 C T TMEM26 Missense_Mutation p.V139I 0.23 tolerated(0.35) benign(0.04) TCGA-XP-A8T6-01 11 122774866 122774866 G T C11orf63 Missense_Mutation p.S193I 0.38 deleterious(0) probably_damaging(0.989) TCGA-XP-A8T6-01 11 36596040 36596040 C T RAG1 Missense_Mutation p.R396C 0.21 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-XP-A8T6-01 11 5537115 5537115 G T UBQLNL Missense_Mutation p.S186Y 0.25 deleterious(0.01) probably_damaging(0.915) TCGA-XP-A8T6-01 11 56000005 56000005 A G OR5T2 Silent p.D219D 0.09 TCGA-XP-A8T6-01 11 60105265 60105265 G A MS4A6E Missense_Mutation p.G67S 0.28 deleterious(0.01) probably_damaging(0.983) TCGA-XP-A8T6-01 11 60183805 60183805 T C MS4A14 Missense_Mutation p.M488T 0.26 deleterious(0.04) benign(0.099) TCGA-XP-A8T6-01 11 66241210 66241210 G A PELI3 Silent p.E218E 0.17 TCGA-XP-A8T6-01 11 67068775 67068775 C T ANKRD13D Silent p.L418L 0.15 TCGA-XP-A8T6-01 12 121867624 121867624 C A KDM2B 3'UTR 0.33 TCGA-XP-A8T6-01 12 57648738 57648738 T C R3HDM2 Missense_Mutation p.T917A 0.42 tolerated(0.32) benign(0.05) TCGA-XP-A8T6-01 12 75905384 75905384 G C KRR1 5'UTR 0.18 TCGA-XP-A8T6-01 15 25468394 25468394 G T SNORD115-29 RNA 0.42 TCGA-XP-A8T6-01 15 25490534 25490534 C A SNORD115-40 3'Flank 0.62 TCGA-XP-A8T6-01 15 58306478 58306478 A T ALDH1A2 Missense_Mutation p.I40N 0.20 deleterious(0.01) probably_damaging(0.998) TCGA-XP-A8T6-01 15 91418967 91418967 C A FURIN 5'UTR 0.22 TCGA-XP-A8T6-01 16 2012996 2012997 AG - RPS2 Intron 0.23 TCGA-XP-A8T6-01 16 2025698 2025698 G A TBL3 Missense_Mutation p.R325Q 0.18 tolerated(1) benign(0.001) TCGA-XP-A8T6-01 16 31419760 31419760 G A ITGAD Missense_Mutation p.A342T 0.09 tolerated(0.42) benign(0) TCGA-XP-A8T6-01 16 3613869 3613869 G A NLRC3 Missense_Mutation p.P404S 0.31 deleterious(0) probably_damaging(0.998) TCGA-XP-A8T6-01 16 5147684 5147684 G A FAM86A Silent p.R19R 0.28 TCGA-XP-A8T6-01 16 57220329 57220329 C T RSPRY1 5'UTR 0.07 TCGA-XP-A8T6-01 16 67304865 67304865 C T SLC9A5 Silent p.L815L 0.06 TCGA-XP-A8T6-01 17 36891779 36891779 G C PCGF2 Silent p.P244P 0.20 TCGA-XP-A8T6-01 17 3978660 3978660 C A ZZEF1 Missense_Mutation p.A1100S 0.22 deleterious(0.03) benign(0.002) TCGA-XP-A8T6-01 17 40993560 40993560 C T PSME3 Missense_Mutation p.R257W 0.20 deleterious(0) possibly_damaging(0.854) TCGA-XP-A8T6-01 17 48157713 48157713 C T ITGA3 Nonsense_Mutation p.R932* 0.18 TCGA-XP-A8T6-01 17 61086934 61086934 G A TANC2 Missense_Mutation p.S5N 0.23 deleterious_low_confidence(0.01) benign(0) TCGA-XP-A8T6-01 17 6510250 6510250 C T KIAA0753 Missense_Mutation p.R651K 0.23 tolerated(0.17) probably_damaging(0.971) TCGA-XP-A8T6-01 17 72442995 72442995 G A GPRC5C Missense_Mutation p.G430E 0.15 tolerated(0.69) possibly_damaging(0.614) TCGA-XP-A8T6-01 17 73945584 73945584 C A ACOX1 Missense_Mutation p.A526S 0.17 deleterious(0.04) probably_damaging(0.923) TCGA-XP-A8T6-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.39 TCGA-XP-A8T6-01 19 18554169 18554169 G A ELL 3'UTR 0.05 TCGA-XP-A8T6-01 19 42873013 42873013 C T MEGF8 Missense_Mutation p.P2100L 0.07 tolerated(0.18) benign(0.013) TCGA-XP-A8T6-01 19 48800199 48800199 G C CCDC114 3'UTR 0.22 TCGA-XP-A8T6-01 19 52659498 52659498 T A ZNF836 Missense_Mutation p.S480C 0.24 tolerated(0.11) possibly_damaging(0.851) TCGA-XP-A8T6-01 19 54664700 54664700 T C TMC4 Missense_Mutation p.I636V 0.12 tolerated(0.56) benign(0.406) TCGA-XP-A8T6-01 19 55146736 55146736 A T LILRB1 Missense_Mutation p.E530V 0.27 deleterious(0) benign(0.408) TCGA-XP-A8T6-01 19 57986507 57986507 T A ZNF772 Silent p.T69T 0.17 TCGA-XP-A8T6-01 19 58578877 58578877 C A ZNF135 Missense_Mutation p.T366N 0.16 deleterious(0.03) possibly_damaging(0.535) TCGA-XP-A8T6-01 1 150727558 150727558 T C CTSS Silent p.T106T 0.15 TCGA-XP-A8T6-01 1 156496073 156496073 T C IQGAP3 3'UTR 0.12 TCGA-XP-A8T6-01 1 17657501 17657501 G A PADI4 Missense_Mutation p.A44T 0.12 tolerated(0.1) benign(0.063) TCGA-XP-A8T6-01 1 19180792 19180792 G A TAS1R2 Missense_Mutation p.A391V 0.11 deleterious(0) probably_damaging(0.97) TCGA-XP-A8T6-01 1 200012970 200012970 G A NR5A2 Missense_Mutation p.D91N 0.11 deleterious(0) probably_damaging(0.997) TCGA-XP-A8T6-01 1 204987304 204987304 G A NFASC 3'UTR 0.34 TCGA-XP-A8T6-01 1 212558750 212558750 C T TMEM206 Missense_Mutation p.G182S 0.17 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-XP-A8T6-01 1 2160898 2160898 G T SKI Silent p.L231L 0.48 TCGA-XP-A8T6-01 1 23645059 23645059 C T HNRNPR Missense_Mutation p.G315R 0.15 deleterious(0.01) probably_damaging(1) TCGA-XP-A8T6-01 1 32052456 32052456 G - TINAGL1 Frame_Shift_Del p.G428Afs*55 0.13 TCGA-XP-A8T6-01 1 53904088 53904088 C T SLC25A3P1 RNA 0.12 TCGA-XP-A8T6-01 1 53904463 53904463 C T SLC25A3P1 RNA 0.20 TCGA-XP-A8T6-01 1 6111666 6111666 C A KCNAB2 Missense_Mutation p.H24N 0.29 tolerated_low_confidence(1) benign(0) TCGA-XP-A8T6-01 1 65143953 65143953 G A CACHD1 Silent p.V1017V 0.38 TCGA-XP-A8T6-01 20 15967423 15967423 A G MACROD2 Missense_Mutation p.Q346R 0.23 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-XP-A8T6-01 20 20351274 20351274 T C INSM1 3'UTR 0.15 TCGA-XP-A8T6-01 20 30126009 30126009 C T HM13 Silent p.L104L 0.26 TCGA-XP-A8T6-01 20 6750872 6750872 C T BMP2 Silent p.F33F 0.09 TCGA-XP-A8T6-01 21 47704296 47704296 C A MCM3AP Missense_Mutation p.R302M 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-XP-A8T6-01 22 24086332 24086332 G A ZNF70 Silent p.G332G 0.22 TCGA-XP-A8T6-01 22 40718961 40718961 A G TNRC6B Missense_Mutation p.S1740G 0.50 deleterious(0.01) benign(0.39) TCGA-XP-A8T6-01 22 51010669 51010669 G A CPT1B Missense_Mutation p.A474V 0.19 deleterious(0) benign(0.228) TCGA-XP-A8T6-01 2 103067351 103067351 C A IL18RAP Missense_Mutation p.S418R 0.07 tolerated(0.09) benign(0.029) TCGA-XP-A8T6-01 2 120677751 120677751 G C PTPN4 Missense_Mutation p.R312T 0.10 tolerated(0.1) benign(0.342) TCGA-XP-A8T6-01 2 128699581 128699581 T C SAP130 Nonstop_Mutation p.*1084Wext*31 0.14 TCGA-XP-A8T6-01 2 164468194 164468194 A G FIGN Missense_Mutation p.Y50H 0.25 tolerated(0.13) probably_damaging(0.987) TCGA-XP-A8T6-01 2 196746602 196746602 C G DNAH7 Missense_Mutation p.A1960P 0.23 deleterious(0.02) possibly_damaging(0.629) TCGA-XP-A8T6-01 2 200136363 200136363 G T SATB2 3'UTR 0.15 TCGA-XP-A8T6-01 2 211421465 211421465 G A CPS1 Missense_Mutation p.R9K 0.28 tolerated_low_confidence(0.44) benign(0.006) TCGA-XP-A8T6-01 2 217234789 217234789 G A MARCH4 Silent p.H65H 0.21 TCGA-XP-A8T6-01 2 66796256 66796256 C T MEIS1 3'UTR 0.21 TCGA-XP-A8T6-01 2 88427516 88427516 G A FABP1 Silent p.Y7Y 0.38 TCGA-XP-A8T6-01 3 119325794 119325794 G A PLA1A Missense_Mutation p.G83R 0.58 tolerated(0.16) benign(0.114) TCGA-XP-A8T6-01 3 121437303 121437303 A C GOLGB1 Missense_Mutation p.L273V 0.47 probably_damaging(0.999) TCGA-XP-A8T6-01 3 133320091 133320091 C T TOPBP1 3'UTR 0.18 TCGA-XP-A8T6-01 3 164907746 164907746 A T SLITRK3 Silent p.A291A 0.08 TCGA-XP-A8T6-01 3 183273443 183273443 G A KLHL6 5'UTR 0.21 TCGA-XP-A8T6-01 3 28361202 28361202 A G CMC1 3'UTR 0.40 TCGA-XP-A8T6-01 3 38924792 38924792 G T SCN11A Missense_Mutation p.Q1051K 0.40 tolerated(0.56) possibly_damaging(0.669) TCGA-XP-A8T6-01 3 49041623 49041623 C T P4HTM Missense_Mutation p.R273W 0.21 deleterious(0) probably_damaging(0.998) TCGA-XP-A8T6-01 3 59997128 59997128 T C FHIT Splice_Site p.X84_splice 0.31 TCGA-XP-A8T6-01 4 156138173 156138173 A G NPY2R 3'UTR 0.11 TCGA-XP-A8T6-01 4 36230983 36230983 A T ARAP2 Missense_Mutation p.N42K 0.17 deleterious(0.01) benign(0.222) TCGA-XP-A8T6-01 4 42487656 42487656 A T ATP8A1 Nonsense_Mutation p.C727* 0.14 TCGA-XP-A8T6-01 4 88239522 88239522 C G HSD17B13 Missense_Mutation p.D93H 0.12 deleterious(0) probably_damaging(0.994) TCGA-XP-A8T6-01 5 127728955 127728955 G T FBN2 Silent p.G446G 0.27 TCGA-XP-A8T6-01 5 140555366 140555366 A G PCDHB7 3'UTR 0.22 TCGA-XP-A8T6-01 5 140595492 140595492 C T PCDHB13 Silent p.N599N 0.30 TCGA-XP-A8T6-01 5 140603871 140603871 C T PCDHB14 Missense_Mutation p.S265L 0.23 tolerated_low_confidence(0.07) possibly_damaging(0.858) TCGA-XP-A8T6-01 5 153144164 153144188 AAGCAGGATCTACTAAGGAGTTCTT - GRIA1 Frame_Shift_Del p.E675Afs*16 0.08 TCGA-XP-A8T6-01 5 17216508 17216508 G A BASP1 5'Flank 0.21 TCGA-XP-A8T6-01 5 180048054 180048054 G A FLT4 Intron 0.21 TCGA-XP-A8T6-01 5 7817053 7817053 C T ADCY2 Silent p.A986A 0.07 TCGA-XP-A8T6-01 6 111694997 111694997 C A REV3L Missense_Mutation p.G1521C 0.29 tolerated(0.06) possibly_damaging(0.503) TCGA-XP-A8T6-01 6 11190694 11190694 C T NEDD9 Missense_Mutation p.V470I 0.33 tolerated(0.1) benign(0.027) TCGA-XP-A8T6-01 6 136596728 136596728 G A BCLAF1 Silent p.S598S 0.13 TCGA-XP-A8T6-01 6 161653331 161653331 G A AGPAT4 5'UTR 0.44 TCGA-XP-A8T6-01 6 29080478 29080478 C G OR2J3 Missense_Mutation p.Q271E 0.21 tolerated(0.12) possibly_damaging(0.492) TCGA-XP-A8T6-01 6 30136085 30136085 C A TRIM15 Silent p.I162I 0.13 TCGA-XP-A8T6-01 6 47779443 47779443 T C OPN5 Silent p.S344S 0.10 TCGA-XP-A8T6-01 6 56342211 56342211 T C DST Missense_Mutation p.I4580V 0.12 benign(0.015) TCGA-XP-A8T6-01 6 70926288 70926288 T C COL9A1 3'UTR 0.12 TCGA-XP-A8T6-01 6 96986512 96986512 G A UFL1 Silent p.L328L 0.46 TCGA-XP-A8T6-01 7 106888850 106888850 T C COG5 Missense_Mutation p.D646G 0.12 deleterious(0) possibly_damaging(0.868) TCGA-XP-A8T6-01 7 134882799 134882799 G T WDR91 Silent p.R332R 0.24 TCGA-XP-A8T6-01 7 143088289 143088290 - AT EPHA1 3'UTR 0.25 TCGA-XP-A8T6-01 7 150035455 150035455 C T RARRES2 3'UTR 0.19 TCGA-XP-A8T6-01 7 156979534 156979534 G A UBE3C Missense_Mutation p.G384S 0.22 tolerated(0.29) benign(0.003) TCGA-XP-A8T6-01 7 44152676 44152676 C T AEBP1 Silent p.L886L 0.10 TCGA-XP-A8T6-01 7 57188226 57188226 C G ZNF479 Missense_Mutation p.C299S 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-XP-A8T6-01 7 83643617 83643617 C G SEMA3A Missense_Mutation p.D240H 0.31 deleterious(0) probably_damaging(0.996) TCGA-XP-A8T6-01 7 86795900 86795901 - T DMTF1 Frame_Shift_Ins p.S72Ifs*11 0.18 TCGA-XP-A8T6-01 7 88962978 88962978 C A ZNF804B Missense_Mutation p.H228N 0.30 tolerated(0.29) possibly_damaging(0.876) TCGA-XP-A8T6-01 8 10355439 10355439 C T PRSS51 RNA 0.24 TCGA-XP-A8T6-01 8 118817064 118817064 T A EXT1 Missense_Mutation p.N651I 0.14 deleterious(0.01) probably_damaging(0.973) TCGA-XP-A8T6-01 8 125326108 125326108 T C TMEM65 3'UTR 0.22 TCGA-XP-A8T6-01 8 132052132 132052132 G T ADCY8 Silent p.R150R 0.36 TCGA-XP-A8T6-01 8 33406939 33406939 G A RNF122 Silent p.A114A 0.18 TCGA-XP-A8T6-01 8 41836217 41836217 C T KAT6A Missense_Mutation p.R329Q 0.35 probably_damaging(0.998) TCGA-XP-A8T6-01 8 42232393 42232393 C T DKK4 Missense_Mutation p.E101K 0.13 tolerated(0.11) benign(0.412) TCGA-XP-A8T6-01 8 52773576 52773576 A G PCMTD1 Missense_Mutation p.Y46H 0.21 tolerated(0.49) benign(0.009) TCGA-XP-A8T6-01 8 91637885 91637885 G A TMEM64 3'UTR 0.09 TCGA-XP-A8T6-01 9 114124436 114124436 C A KIAA0368 Missense_Mutation p.W1976C 0.35 tolerated(0.18) probably_damaging(0.918) TCGA-XP-A8T6-01 9 131857450 131857450 T A CRAT 3'UTR 0.40 TCGA-XP-A8T6-01 9 21206920 21206920 G T IFNA10 Missense_Mutation p.F59L 0.24 deleterious(0) possibly_damaging(0.849) TCGA-XP-A8T6-01 9 35563176 35563176 G C FAM166B Missense_Mutation p.I91M 0.15 deleterious(0) possibly_damaging(0.863) TCGA-XP-A8T6-01 X 128881662 128881662 G T XPNPEP2 Silent p.L190L 0.14 TCGA-XP-A8T6-01 X 12905425 12905425 A T TLR7 Nonsense_Mutation p.K600* 0.40 TCGA-XP-A8T6-01 X 129299683 129299683 C A AIFM1 5'UTR 0.19 TCGA-XP-A8T6-01 X 142717585 142717585 C A SLITRK4 Missense_Mutation p.G447V 0.32 deleterious(0) probably_damaging(1) TCGA-XP-A8T6-01 X 151896131 151896131 C T MAGEA12 3'Flank 0.06 TCGA-XP-A8T6-01 X 153208330 153208330 G A RENBP Missense_Mutation p.R222W 0.27 deleterious(0) possibly_damaging(0.818) TCGA-XP-A8T6-01 X 47088143 47088143 C G CDK16 Missense_Mutation p.F563L 0.50 deleterious_low_confidence(0.05) benign(0.009) TCGA-XP-A8T6-01 X 48759676 48759676 A C PQBP1 Missense_Mutation p.R153S 0.61 tolerated(0.62) benign(0.304) TCGA-XP-A8T7-01 10 105209038 105209038 G T CALHM2 Intron 0.39 TCGA-XP-A8T7-01 10 106072200 106072200 G A ITPRIP 3'UTR 0.27 TCGA-XP-A8T7-01 10 106160486 106160486 G A CCDC147 Missense_Mutation p.D622N 0.21 deleterious(0) possibly_damaging(0.869) TCGA-XP-A8T7-01 10 106849543 106849543 G A SORCS3 Missense_Mutation p.G347R 0.25 deleterious(0.02) benign(0.394) TCGA-XP-A8T7-01 10 43701554 43701554 G A RASGEF1A Missense_Mutation p.T4M 0.39 deleterious(0) possibly_damaging(0.708) TCGA-XP-A8T7-01 10 51027247 51027247 G A PARG 3'UTR 0.35 TCGA-XP-A8T7-01 10 61830987 61830987 G T ANK3 Missense_Mutation p.L3218I 0.35 benign(0.01) TCGA-XP-A8T7-01 10 73039676 73039676 G A UNC5B Missense_Mutation p.V60M 0.39 deleterious(0) probably_damaging(0.999) TCGA-XP-A8T7-01 10 85936240 85936240 G C C10orf99 Missense_Mutation p.K25N 0.23 deleterious(0.01) benign(0.322) TCGA-XP-A8T7-01 10 88820542 88820542 T C GLUD1 Missense_Mutation p.Y367C 0.35 tolerated(0.05) benign(0.112) TCGA-XP-A8T7-01 10 95993928 95993928 G A PLCE1 Silent p.V691V 0.43 TCGA-XP-A8T7-01 11 102100570 102100570 C G YAP1 Missense_Mutation p.P472A 0.63 deleterious(0.02) possibly_damaging(0.456) TCGA-XP-A8T7-01 11 108058908 108058908 T A NPAT Splice_Site p.X186_splice 0.54 TCGA-XP-A8T7-01 11 12278428 12278428 G A MICAL2 Missense_Mutation p.E1018K 0.12 deleterious(0) probably_damaging(0.999) TCGA-XP-A8T7-01 11 55594834 55594834 C A OR5L2 Missense_Mutation p.A47E 0.27 deleterious(0.01) possibly_damaging(0.649) TCGA-XP-A8T7-01 11 62549432 62549432 G A TAF6L Missense_Mutation p.V200I 0.23 tolerated(0.5) benign(0.012) TCGA-XP-A8T7-01 11 70348384 70348384 C T SHANK2 Silent p.P736P 0.06 TCGA-XP-A8T7-01 11 71671862 71671862 C T RNF121 Silent p.L56L 0.09 TCGA-XP-A8T7-01 12 114841727 114841727 G A TBX5 5'UTR 0.34 TCGA-XP-A8T7-01 12 120127977 120127977 G A CIT Silent p.T2055T 0.40 TCGA-XP-A8T7-01 12 123893629 123893629 G C SETD8 3'UTR 0.30 TCGA-XP-A8T7-01 12 132635841 132635842 - G NOC4L Frame_Shift_Ins p.D335Gfs*18 0.18 TCGA-XP-A8T7-01 12 133365650 133365650 G A GOLGA3 Missense_Mutation p.A925V 0.31 tolerated(1) benign(0.002) TCGA-XP-A8T7-01 13 24242195 24242195 G A TNFRSF19 Silent p.V271V 0.18 TCGA-XP-A8T7-01 13 30088299 30088299 C G SLC7A1 3'UTR 0.30 TCGA-XP-A8T7-01 13 43148538 43148538 G A TNFSF11 Silent p.P33P 0.35 TCGA-XP-A8T7-01 13 77739514 77739514 A T MYCBP2 Missense_Mutation p.L2080H 0.34 benign(0.418) TCGA-XP-A8T7-01 13 95229646 95229647 - A TGDS Frame_Shift_Ins p.W288Lfs*3 0.26 TCGA-XP-A8T7-01 14 106866572 106866572 C T IGHV3-38 Missense_Mutation p.G61E 0.14 tolerated_low_confidence(0.08) possibly_damaging(0.737) TCGA-XP-A8T7-01 14 21462709 21462709 A T METTL17 Silent p.S235S 0.63 TCGA-XP-A8T7-01 14 21830353 21830353 C T SUPT16H Intron 0.74 TCGA-XP-A8T7-01 14 42357161 42357161 C T LRFN5 Missense_Mutation p.R445C 0.70 deleterious(0.02) possibly_damaging(0.593) TCGA-XP-A8T7-01 14 75748401 75748401 G C FOS 3'UTR 0.59 TCGA-XP-A8T7-01 14 76640108 76640108 G C GPATCH2L Intron 0.14 TCGA-XP-A8T7-01 14 77873059 77873059 G T NOXRED1 Intron 0.64 TCGA-XP-A8T7-01 14 95905383 95905383 C T SYNE3 Missense_Mutation p.R788K 0.27 tolerated(0.3) benign(0.009) TCGA-XP-A8T7-01 14 97033008 97033008 C T PAPOLA 3'UTR 0.29 TCGA-XP-A8T7-01 15 102303947 102303947 A G DNM1P47 RNA 0.18 TCGA-XP-A8T7-01 15 24922699 24922699 C T NPAP1 Missense_Mutation p.S562F 0.22 tolerated(0.17) probably_damaging(0.982) TCGA-XP-A8T7-01 15 25436407 25436407 C T SNORD115-11 3'Flank 0.22 TCGA-XP-A8T7-01 15 25474026 25474026 T A SNORD115-33 5'Flank 0.39 TCGA-XP-A8T7-01 15 44028270 44028270 C G RNU6-354P 5'Flank 0.29 TCGA-XP-A8T7-01 15 58284926 58284926 T G ALDH1A2 Missense_Mutation p.I259L 0.16 tolerated(0.12) benign(0.037) TCGA-XP-A8T7-01 15 64977379 64977379 A T ZNF609 3'UTR 0.06 TCGA-XP-A8T7-01 15 85400143 85400143 A T ALPK3 Missense_Mutation p.E927V 0.34 deleterious_low_confidence(0) possibly_damaging(0.46) TCGA-XP-A8T7-01 15 91341471 91341471 G T BLM Missense_Mutation p.V1088F 0.20 deleterious(0) possibly_damaging(0.816) TCGA-XP-A8T7-01 16 20970694 20970694 C G DNAH3 Missense_Mutation p.G3545R 0.35 deleterious(0.02) probably_damaging(0.934) TCGA-XP-A8T7-01 16 21666980 21666980 C G METTL9 3'UTR 0.45 TCGA-XP-A8T7-01 16 23360218 23360218 G T SCNN1B Missense_Mutation p.A100S 0.34 tolerated(0.14) benign(0.052) TCGA-XP-A8T7-01 16 57201049 57201049 C T FAM192A Silent p.K146K 0.37 TCGA-XP-A8T7-01 17 18429102 18429102 T G FAM106A 3'UTR 0.70 TCGA-XP-A8T7-01 17 19679415 19679415 G A ULK2 3'UTR 0.39 TCGA-XP-A8T7-01 17 35598921 35598921 C G ACACA Missense_Mutation p.E994Q 0.23 deleterious(0.01) benign(0.431) TCGA-XP-A8T7-01 17 36883042 36883042 C T MLLT6 3'UTR 0.50 TCGA-XP-A8T7-01 17 36892358 36892358 G - PCGF2 Frame_Shift_Del p.Y215Tfs*24 0.39 TCGA-XP-A8T7-01 17 44626126 44626126 G A LRRC37A2 Silent p.G1207G 0.21 TCGA-XP-A8T7-01 17 56620587 56620587 C T C17orf47 Missense_Mutation p.V321M 0.41 tolerated(0.46) benign(0.011) TCGA-XP-A8T7-01 17 58024245 58024245 G A RPS6KB1 3'UTR 0.33 TCGA-XP-A8T7-01 17 61744308 61744308 C A MAP3K3 Silent p.S161S 0.43 TCGA-XP-A8T7-01 17 72477866 72477866 C G CD300A Missense_Mutation p.A223G 0.38 tolerated(0.14) benign(0.112) TCGA-XP-A8T7-01 17 7577062 7577062 T - TP53 Frame_Shift_Del p.E294Sfs*51 0.42 TCGA-XP-A8T7-01 18 7050775 7050775 C T LAMA1 Missense_Mutation p.R169Q 0.37 tolerated(0.13) benign(0.085) TCGA-XP-A8T7-01 19 16317176 16317176 C T AP1M1 Missense_Mutation p.A75V 0.35 tolerated(0.17) benign(0.072) TCGA-XP-A8T7-01 19 36333045 36333045 G A NPHS1 Silent p.L882L 0.28 TCGA-XP-A8T7-01 19 47986768 47986768 C T KPTN Silent p.T100T 0.24 TCGA-XP-A8T7-01 19 47998746 47998746 A G NAPA Intron 0.29 TCGA-XP-A8T7-01 19 49425673 49425679 CATCTGT - NUCB1 Frame_Shift_Del p.H460D 0.41 TCGA-XP-A8T7-01 19 52714685 52714685 G A PPP2R1A Missense_Mutation p.C148Y 0.32 deleterious(0) probably_damaging(0.985) TCGA-XP-A8T7-01 19 53793366 53793366 C T BIRC8 Missense_Mutation p.E88K 0.23 tolerated(0.1) benign(0.004) TCGA-XP-A8T7-01 19 54678123 54678125 CTC - MBOAT7 In_Frame_Del p.S345del 0.29 TCGA-XP-A8T7-01 19 58352646 58352646 G C ZNF587B Missense_Mutation p.E202Q 0.24 tolerated(0.29) possibly_damaging(0.552) TCGA-XP-A8T7-01 1 116238114 116238114 T A VANGL1 3'UTR 0.16 TCGA-XP-A8T7-01 1 116238115 116238115 C A VANGL1 3'UTR 0.15 TCGA-XP-A8T7-01 1 1190236 1190236 C T UBE2J2 3'Flank 0.27 TCGA-XP-A8T7-01 1 152191117 152191117 G A HRNR Silent p.H996H 0.41 TCGA-XP-A8T7-01 1 161495361 161495361 G C HSPA6 Missense_Mutation p.E305Q 0.34 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-XP-A8T7-01 1 225490958 225490958 C T DNAH14 Missense_Mutation p.T2165M 0.36 deleterious(0) probably_damaging(0.999) TCGA-XP-A8T7-01 1 240255968 240255968 C T FMN2 Missense_Mutation p.H187Y 0.30 unknown(0) TCGA-XP-A8T7-01 1 248004653 248004653 C A OR11L1 Silent p.P182P 0.23 TCGA-XP-A8T7-01 1 32084943 32084943 C T HCRTR1 Silent p.I50I 0.33 TCGA-XP-A8T7-01 1 36028834 36028834 G A NCDN Missense_Mutation p.V473I 0.44 deleterious(0) benign(0.017) TCGA-XP-A8T7-01 1 40705442 40705442 C T RLF Nonsense_Mutation p.Q1690* 0.22 TCGA-XP-A8T7-01 1 47501605 47501605 G A CYP4X1 Missense_Mutation p.S207N 0.25 tolerated(0.25) probably_damaging(0.932) TCGA-XP-A8T7-01 1 51820874 51820874 A G EPS15 3'UTR 0.48 TCGA-XP-A8T7-01 1 75065555 75065555 C T C1orf173 Missense_Mutation p.G517E 0.29 deleterious(0.01) possibly_damaging(0.861) TCGA-XP-A8T7-01 20 31600673 31600673 C T BPIFB2 Missense_Mutation p.R90C 0.47 deleterious(0.01) probably_damaging(0.912) TCGA-XP-A8T7-01 22 26706706 26706706 C A SEZ6L Missense_Mutation p.P529T 0.16 deleterious(0) probably_damaging(1) TCGA-XP-A8T7-01 22 45684984 45684984 G C UPK3A Missense_Mutation p.E177D 0.41 tolerated(0.18) benign(0.023) TCGA-XP-A8T7-01 22 46098707 46098707 A T ATXN10 Missense_Mutation p.K209N 0.27 tolerated(0.07) possibly_damaging(0.756) TCGA-XP-A8T7-01 22 50860746 50860746 C T PPP6R2 Silent p.S304S 0.44 TCGA-XP-A8T7-01 2 171243657 171243660 CTCC - MYO3B Frame_Shift_Del p.S473Wfs*25 0.31 TCGA-XP-A8T7-01 2 173883429 173883429 G A RAPGEF4 Missense_Mutation p.R685Q 0.35 tolerated(0.27) possibly_damaging(0.695) TCGA-XP-A8T7-01 2 189901379 189901379 G A COL5A2 Missense_Mutation p.P1359L 0.33 unknown(0) TCGA-XP-A8T7-01 2 228169785 228169785 C T COL4A3 Missense_Mutation p.S1413F 0.32 unknown(0) TCGA-XP-A8T7-01 2 2328522 2328522 A G MYT1L Intron 0.32 TCGA-XP-A8T7-01 2 234591302 234591302 C T UGT1A7 Missense_Mutation p.T240M 0.30 deleterious(0) probably_damaging(0.958) TCGA-XP-A8T7-01 2 241451391 241451391 G A ANKMY1 Missense_Mutation p.L636F 0.23 tolerated(0.1) probably_damaging(0.997) TCGA-XP-A8T7-01 2 47604906 47604906 C T EPCAM Intron 0.41 TCGA-XP-A8T7-01 2 48921377 48921377 C G LHCGR Silent p.V311V 0.25 TCGA-XP-A8T7-01 2 79364421 79364421 C G REG1P RNA 0.25 TCGA-XP-A8T7-01 3 130107707 130107707 C T COL6A5 Nonsense_Mutation p.Q716* 0.26 TCGA-XP-A8T7-01 3 178938934 178938934 G A PIK3CA Missense_Mutation p.E726K 0.26 tolerated(0.36) benign(0.4) TCGA-XP-A8T7-01 3 182871574 182871574 G A LAMP3 Nonsense_Mutation p.Q219* 0.28 TCGA-XP-A8T7-01 3 185929635 185929635 C T DGKG Silent p.S622S 0.23 TCGA-XP-A8T7-01 3 52327044 52327044 T A GLYCTK Missense_Mutation p.F492I 0.47 deleterious(0.04) probably_damaging(0.986) TCGA-XP-A8T7-01 3 87304621 87304621 A T CHMP2B 3'UTR 0.52 TCGA-XP-A8T7-01 4 123145797 123145797 G T KIAA1109 Missense_Mutation p.A920S 0.68 benign(0.278) TCGA-XP-A8T7-01 4 153250883 153250883 G A FBXW7 Nonsense_Mutation p.R393* 0.81 TCGA-XP-A8T7-01 5 140476081 140476081 C T PCDHB2 Silent p.N569N 0.45 TCGA-XP-A8T7-01 5 24487941 24487941 A T CDH10 Missense_Mutation p.L733H 0.40 deleterious(0) probably_damaging(0.996) TCGA-XP-A8T7-01 5 24511486 24511486 C G CDH10 Missense_Mutation p.D318H 0.69 deleterious(0.02) possibly_damaging(0.746) TCGA-XP-A8T7-01 5 37183047 37183047 G A C5orf42 Silent p.L1746L 0.60 TCGA-XP-A8T7-01 5 56510008 56510008 A G GPBP1 Silent p.P17P 0.75 TCGA-XP-A8T7-01 5 79029456 79029456 A G CMYA5 Missense_Mutation p.E1623G 0.38 benign(0.188) TCGA-XP-A8T7-01 6 31785566 31785571 TTTTGG - HSPA1A 3'UTR 0.23 TCGA-XP-A8T7-01 6 52876632 52876632 C T ICK Missense_Mutation p.R476Q 0.31 tolerated(0.59) benign(0.001) TCGA-XP-A8T7-01 7 151962148 151962148 C G KMT2C Missense_Mutation p.E387Q 0.09 possibly_damaging(0.597) TCGA-XP-A8T7-01 7 1533526 1533526 G C INTS1 Silent p.S644S 0.25 TCGA-XP-A8T7-01 7 2565060 2565060 C A LFNG Missense_Mutation p.H198Q 0.35 deleterious(0) probably_damaging(0.993) TCGA-XP-A8T7-01 7 42003915 42003915 T C GLI3 3'UTR 0.32 TCGA-XP-A8T7-01 7 88964137 88964137 G T ZNF804B Missense_Mutation p.R614I 0.51 deleterious(0.02) benign(0.169) TCGA-XP-A8T7-01 8 1893811 1893811 C T ARHGEF10 Silent p.N1129N 0.31 TCGA-XP-A8T7-01 8 86573332 86573332 G A REXO1L1P 3'UTR 0.07 TCGA-XP-A8T7-01 8 92032388 92032388 T A TMEM55A Missense_Mutation p.N120I 0.32 deleterious(0.03) possibly_damaging(0.765) TCGA-XP-A8T7-01 8 94936733 94936733 A - PDP1 3'UTR 0.50 TCGA-XP-A8T7-01 9 139341801 139341801 C G SEC16A Missense_Mutation p.R2192P 0.20 deleterious(0) probably_damaging(0.999) TCGA-XP-A8T7-01 9 21968242 21968242 C T CDKN2A Splice_Site 0.59 TCGA-XP-A8T7-01 9 82341159 82341159 G A TLE4 3'Flank 0.77 TCGA-XP-A8T7-01 9 90502226 90502226 A G SPATA31E1 Missense_Mutation p.T942A 0.36 tolerated(0.54) benign(0.113) TCGA-XP-A8T7-01 X 149013037 149013037 C A MAGEA8 5'UTR 0.19 TCGA-XP-A8T7-01 X 151870172 151870172 C A MAGEA6 Missense_Mutation p.H288N 0.25 deleterious(0.03) benign(0.001) TCGA-XP-A8T7-01 X 27766027 27766027 G A DCAF8L2 Missense_Mutation p.E339K 0.27 deleterious(0.04) probably_damaging(0.919) TCGA-XP-A8T7-01 X 49023631 49023631 G A MAGIX 3'Flank 0.32 TCGA-XP-A8T7-01 X 54953052 54953052 G A TRO Missense_Mutation p.R565H 0.48 tolerated(0.67) unknown(0) TCGA-XP-A8T7-01 X 55033867 55033867 G A APEX2 Silent p.%3D 0.54 TCGA-XP-A8T7-01 X 70823523 70823523 C T ACRC Silent p.N132N 0.27 TCGA-XP-A8T7-01 X 73068515 73068515 G A XIST RNA 0.24 TCGA-XP-A8T8-01 10 5754877 5754877 A G FAM208B 5'UTR 0.26 TCGA-XP-A8T8-01 10 8019276 8019276 C A TAF3 Missense_Mutation p.Q769K 0.31 deleterious_low_confidence(0) benign(0.042) TCGA-XP-A8T8-01 10 86018276 86018276 A G RGR Missense_Mutation p.I257V 0.17 tolerated(0.29) benign(0.015) TCGA-XP-A8T8-01 10 97921704 97921704 A G ZNF518A RNA 0.31 TCGA-XP-A8T8-01 11 10828881 10828881 T C EIF4G2 5'UTR 0.31 TCGA-XP-A8T8-01 11 1269981 1269981 C T MUC5B Silent p.T3957T 0.28 TCGA-XP-A8T8-01 11 47593922 47593922 A C KBTBD4 3'UTR 0.10 TCGA-XP-A8T8-01 11 55418475 55418475 C G OR4S2 Missense_Mutation p.F32L 0.23 tolerated(0.52) benign(0.059) TCGA-XP-A8T8-01 11 6579838 6579838 C T DNHD1 Silent p.D3042D 0.11 TCGA-XP-A8T8-01 11 66204663 66204663 C T MRPL11 Missense_Mutation p.A129T 0.06 tolerated(0.6) benign(0.177) TCGA-XP-A8T8-01 11 66239874 66239874 A C PELI3 Missense_Mutation p.Y130S 0.28 deleterious(0) probably_damaging(0.997) TCGA-XP-A8T8-01 12 10271066 10271066 A C CLEC7A Missense_Mutation p.F245L 0.19 tolerated(1) benign(0.001) TCGA-XP-A8T8-01 12 120882537 120882537 A C TRIAP1 3'UTR 0.64 TCGA-XP-A8T8-01 12 133291604 133291604 C T PGAM5 Missense_Mutation p.R118C 0.25 tolerated(0.06) benign(0.013) TCGA-XP-A8T8-01 12 19626251 19626251 A G AEBP2 Missense_Mutation p.R317G 0.45 deleterious_low_confidence(0.02) possibly_damaging(0.777) TCGA-XP-A8T8-01 12 27133537 27133537 T A TM7SF3 Missense_Mutation p.Y333F 0.38 tolerated(1) benign(0.023) TCGA-XP-A8T8-01 12 2801925 2801925 G A CACNA1C 3'Flank 0.21 TCGA-XP-A8T8-01 13 25946268 25946268 C A ATP8A2 5'UTR 0.75 TCGA-XP-A8T8-01 14 29261391 29261391 G A C14orf23 Missense_Mutation p.S143N 0.32 tolerated_low_confidence(0.64) benign(0) TCGA-XP-A8T8-01 14 71445317 71445317 A C PCNX Missense_Mutation p.N755H 0.36 deleterious(0) benign(0.281) TCGA-XP-A8T8-01 15 28451412 28451412 C T HERC2 Missense_Mutation p.A2396T 0.48 possibly_damaging(0.858) TCGA-XP-A8T8-01 15 43827200 43827200 C A PPIP5K1 Missense_Mutation p.C1325F 0.26 tolerated_low_confidence(0.42) benign(0.002) TCGA-XP-A8T8-01 15 53908157 53908157 C G WDR72 Missense_Mutation p.S749T 0.58 tolerated(0.68) benign(0.004) TCGA-XP-A8T8-01 15 74290730 74290730 A T PML Missense_Mutation p.Q172L 0.67 deleterious(0) benign(0.322) TCGA-XP-A8T8-01 15 85411669 85411669 G C ALPK3 Missense_Mutation p.K1902N 0.41 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-XP-A8T8-01 15 93617030 93617030 C G RGMA 5'UTR 0.19 TCGA-XP-A8T8-01 16 23093847 23093847 T C USP31 Missense_Mutation p.H621R 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-XP-A8T8-01 16 56667702 56667702 C T MT1M Missense_Mutation p.A45V 0.42 deleterious(0.05) possibly_damaging(0.787) TCGA-XP-A8T8-01 16 67298363 67298363 A T SLC9A5 Missense_Mutation p.T651S 0.10 tolerated(0.13) benign(0.222) TCGA-XP-A8T8-01 16 70995941 70995941 C T HYDIN Nonsense_Mutation p.W1963* 0.13 TCGA-XP-A8T8-01 16 81087509 81087509 G T RP11-303E16.5 5'Flank 0.30 TCGA-XP-A8T8-01 16 89341252 89341252 G A ANKRD11 Silent p.S2561S 0.22 TCGA-XP-A8T8-01 17 35913272 35913273 - A SYNRG Frame_Shift_Ins p.M851Ifs*3 0.19 TCGA-XP-A8T8-01 17 38975181 38975181 C T KRT10 Missense_Mutation p.G536S 0.29 tolerated_low_confidence(0.41) unknown(0) TCGA-XP-A8T8-01 17 38975189 38975191 CCA - KRT10 In_Frame_Del p.G533del 0.33 TCGA-XP-A8T8-01 17 4637861 4637861 A - CXCL16 Intron 0.35 TCGA-XP-A8T8-01 17 55183839 55183839 G T AKAP1 Missense_Mutation p.L338F 0.26 deleterious(0.04) benign(0.374) TCGA-XP-A8T8-01 17 55183841 55183841 A G AKAP1 Missense_Mutation p.D339G 0.24 deleterious(0.01) benign(0.013) TCGA-XP-A8T8-01 17 7579369 7579369 G C TP53 Missense_Mutation p.S106R 0.67 tolerated(0.41) benign(0.27) TCGA-XP-A8T8-01 17 9818705 9818705 T C GAS7 3'UTR 0.36 TCGA-XP-A8T8-01 18 30091939 30091939 G A WBP11P1 RNA 0.32 TCGA-XP-A8T8-01 18 59195231 59195231 C A CDH20 Missense_Mutation p.T350N 0.55 tolerated(0.14) benign(0.011) TCGA-XP-A8T8-01 18 71814970 71814970 C G FBXO15 Missense_Mutation p.Q17H 0.39 tolerated(0.24) benign(0.201) TCGA-XP-A8T8-01 19 24010564 24010568 CTGTA - RPSAP58 Frame_Shift_Del p.Y202Lfs*5 0.36 TCGA-XP-A8T8-01 19 36283304 36283304 G A ARHGAP33 3'Flank 0.32 TCGA-XP-A8T8-01 19 37005581 37005581 G T ZNF260 Missense_Mutation p.T187N 0.15 deleterious(0.04) benign(0.066) TCGA-XP-A8T8-01 19 37130748 37130748 T - ZNF461 Frame_Shift_Del p.I167Lfs*98 0.13 TCGA-XP-A8T8-01 19 43373155 43373155 G A PSG1 Silent p.N247N 0.22 TCGA-XP-A8T8-01 19 43430802 43430802 G T PSG7 Missense_Mutation p.T259N 0.38 tolerated(0.22) benign(0.003) TCGA-XP-A8T8-01 19 43430805 43430805 G A PSG7 Missense_Mutation p.S258L 0.39 tolerated(0.75) benign(0.001) TCGA-XP-A8T8-01 19 53652593 53652593 T C ZNF347 Missense_Mutation p.I15V 0.69 tolerated(0.08) probably_damaging(0.953) TCGA-XP-A8T8-01 19 54485599 54485599 G A CACNG8 Silent p.S258S 0.36 TCGA-XP-A8T8-01 19 57133981 57133981 G T ZNF71 Missense_Mutation p.Q442H 0.33 deleterious(0.02) probably_damaging(0.996) TCGA-XP-A8T8-01 19 6750388 6750388 C T TRIP10 Missense_Mutation p.A438V 0.23 tolerated(0.55) benign(0.002) TCGA-XP-A8T8-01 19 9071105 9071105 C T MUC16 Silent p.S5447S 0.14 TCGA-XP-A8T8-01 1 114253027 114253027 C A PHTF1 Missense_Mutation p.R373L 0.62 tolerated(0.07) probably_damaging(0.916) TCGA-XP-A8T8-01 1 12908030 12908030 G A HNRNPCL1 Missense_Mutation p.S38F 0.10 deleterious(0) probably_damaging(0.958) TCGA-XP-A8T8-01 1 152277313 152277313 G C FLG Nonsense_Mutation p.S3350* 0.17 TCGA-XP-A8T8-01 1 155221327 155221327 T A FAM189B Missense_Mutation p.Y287F 0.19 deleterious(0) probably_damaging(0.965) TCGA-XP-A8T8-01 1 155221328 155221328 A T FAM189B Missense_Mutation p.Y287N 0.19 deleterious(0) probably_damaging(0.99) TCGA-XP-A8T8-01 1 155290347 155290347 C A FDPS Missense_Mutation p.P403T 0.18 deleterious(0.05) benign(0.395) TCGA-XP-A8T8-01 1 171154891 171154891 T C FMO2 Silent p.S13S 0.15 TCGA-XP-A8T8-01 1 179533884 179533884 G C NPHS2 Missense_Mutation p.L107V 0.09 tolerated(0.76) benign(0.009) TCGA-XP-A8T8-01 1 181724429 181724429 G A CACNA1E Silent p.V1295V 0.21 TCGA-XP-A8T8-01 1 183212909 183212909 T - LAMC2 3'UTR 0.17 TCGA-XP-A8T8-01 1 190129936 190129936 G A BRINP3 Missense_Mutation p.S349F 0.55 tolerated(0.52) benign(0.165) TCGA-XP-A8T8-01 1 214560236 214560236 G A PTPN14 Silent p.P339P 0.23 TCGA-XP-A8T8-01 1 2429014 2429014 C T PLCH2 Silent p.C703C 0.51 TCGA-XP-A8T8-01 1 39853455 39853455 C T MACF1 Missense_Mutation p.R2919W 0.52 probably_damaging(0.999) TCGA-XP-A8T8-01 1 52798549 52798549 A G ZFYVE9 Missense_Mutation p.Y1183C 0.67 deleterious(0) probably_damaging(1) TCGA-XP-A8T8-01 1 54060185 54060185 C G GLIS1 Missense_Mutation p.E131Q 0.36 tolerated_low_confidence(0.12) possibly_damaging(0.56) TCGA-XP-A8T8-01 20 17922937 17922937 T A SNX5 3'UTR 0.30 TCGA-XP-A8T8-01 20 37591011 37591012 - T DHX35 Frame_Shift_Ins p.M1? 0.32 TCGA-XP-A8T8-01 20 43629138 43629138 G T STK4 Missense_Mutation p.D313Y 0.48 deleterious(0.03) benign(0.008) TCGA-XP-A8T8-01 20 60736518 60736518 C T SS18L1 Silent p.G86G 0.33 TCGA-XP-A8T8-01 22 26906094 26906094 C A TFIP11 Missense_Mutation p.A49S 0.19 tolerated(0.06) probably_damaging(0.955) TCGA-XP-A8T8-01 22 29664103 29664103 T - EWSR1 5'Flank 0.33 TCGA-XP-A8T8-01 22 39917510 39917510 C T ATF4 Silent p.F20F 0.11 TCGA-XP-A8T8-01 22 50599160 50599160 T G MOV10L1 Missense_Mutation p.L1123W 0.12 deleterious(0) probably_damaging(1) TCGA-XP-A8T8-01 2 10098951 10098951 G - GRHL1 Frame_Shift_Del p.E82Rfs*18 0.38 TCGA-XP-A8T8-01 2 102808451 102808451 T C IL1RL2 Silent p.T120T 0.13 TCGA-XP-A8T8-01 2 131522133 131522133 C T AMER3 Missense_Mutation p.P830S 0.61 tolerated(0.5) benign(0.115) TCGA-XP-A8T8-01 2 152325154 152325154 G C RIF1 Splice_Site p.X2276_splice 0.28 TCGA-XP-A8T8-01 2 1635906 1635906 C T PXDN 3'UTR 0.63 TCGA-XP-A8T8-01 2 179456146 179456146 T C TTN Missense_Mutation p.I20102M 0.12 TCGA-XP-A8T8-01 2 182794901 182794901 T C SSFA2 3'UTR 0.18 TCGA-XP-A8T8-01 2 191827731 191827731 T C GLS 3'UTR 0.08 TCGA-XP-A8T8-01 2 220479262 220479262 G C STK11IP Missense_Mutation p.V966L 0.09 tolerated(0.33) probably_damaging(0.98) TCGA-XP-A8T8-01 2 227600553 227600553 G A IRS1 3'UTR 0.49 TCGA-XP-A8T8-01 2 32460524 32460524 C G NLRC4 Missense_Mutation p.V910L 0.20 tolerated(0.6) benign(0.001) TCGA-XP-A8T8-01 2 55826102 55826102 T C SMEK2 Missense_Mutation p.E124G 0.13 deleterious(0.01) benign(0.028) TCGA-XP-A8T8-01 2 64141399 64141399 T A VPS54 Missense_Mutation p.I751F 0.65 deleterious(0.01) possibly_damaging(0.717) TCGA-XP-A8T8-01 2 86327110 86327110 T A POLR1A Missense_Mutation p.Y88F 0.52 tolerated(0.11) probably_damaging(0.988) TCGA-XP-A8T8-01 2 87000518 87000518 A G RMND5A Missense_Mutation p.K387R 0.51 tolerated(0.76) benign(0.034) TCGA-XP-A8T8-01 3 101389956 101389956 G C ZBTB11 Intron 0.21 TCGA-XP-A8T8-01 3 121100286 121100286 G C STXBP5L Missense_Mutation p.G856R 0.12 deleterious(0) probably_damaging(0.999) TCGA-XP-A8T8-01 3 150261660 150261660 T C SERP1 3'UTR 0.11 TCGA-XP-A8T8-01 3 152180663 152180663 A G MBNL1 3'UTR 0.81 TCGA-XP-A8T8-01 3 197510287 197510287 A T FYTTD1 3'UTR 0.24 TCGA-XP-A8T8-01 3 197607434 197607434 A T LRCH3 Nonsense_Mutation p.R132* 0.08 TCGA-XP-A8T8-01 3 38295029 38295029 G A OXSR1 3'UTR 0.67 TCGA-XP-A8T8-01 4 1235290 1235290 G A CTBP1 Intron 0.32 TCGA-XP-A8T8-01 4 141590791 141590791 T C TBC1D9 Silent p.K478K 0.38 TCGA-XP-A8T8-01 4 265711 265711 C A ZNF732 Missense_Mutation p.G312V 0.39 deleterious(0) probably_damaging(0.999) TCGA-XP-A8T8-01 4 39276490 39276490 G A WDR19 Missense_Mutation p.A1210T 0.34 deleterious(0) probably_damaging(0.987) TCGA-XP-A8T8-01 4 73930518 73930518 C T COX18 Missense_Mutation p.V233I 0.50 tolerated(0.3) benign(0.021) TCGA-XP-A8T8-01 4 78678024 78678024 T C CNOT6L Missense_Mutation p.N161S 0.53 tolerated(0.61) benign(0.128) TCGA-XP-A8T8-01 4 96127865 96127865 C T UNC5C Missense_Mutation p.V606I 0.33 tolerated(1) benign(0.002) TCGA-XP-A8T8-01 4 9982321 9982321 G T SLC2A9 Silent p.I192I 0.35 TCGA-XP-A8T8-01 5 118485616 118485616 C G DMXL1 Missense_Mutation p.S1365C 0.35 deleterious(0.03) possibly_damaging(0.838) TCGA-XP-A8T8-01 5 140221052 140221052 C T PCDHA8 Missense_Mutation p.A49V 0.06 deleterious_low_confidence(0.01) possibly_damaging(0.897) TCGA-XP-A8T8-01 5 140615725 140615725 C T PCDHB18 RNA 0.23 TCGA-XP-A8T8-01 5 140683267 140683267 C A SLC25A2 Missense_Mutation p.A56S 0.24 tolerated(0.43) benign(0.004) TCGA-XP-A8T8-01 5 140752321 140752321 G T PCDHGB3 Missense_Mutation p.W787L 0.39 tolerated(0.79) benign(0.001) TCGA-XP-A8T8-01 5 140797618 140797618 C T PCDHGB7 Silent p.R64R 0.28 TCGA-XP-A8T8-01 5 150563967 150563967 C T CCDC69 Silent p.T217T 0.15 TCGA-XP-A8T8-01 5 150923012 150923012 G A FAT2 Missense_Mutation p.A2559V 0.18 probably_damaging(1) TCGA-XP-A8T8-01 5 150923013 150923013 C A FAT2 Missense_Mutation p.A2559S 0.18 probably_damaging(1) TCGA-XP-A8T8-01 5 157178533 157178533 A G LSM11 Missense_Mutation p.N195S 0.20 deleterious(0) probably_damaging(0.983) TCGA-XP-A8T8-01 5 175530248 175530248 T - FAM153B Frame_Shift_Del p.Q152Rfs*16 0.22 TCGA-XP-A8T8-01 5 23522934 23522934 C T PRDM9 Silent p.G274G 0.15 TCGA-XP-A8T8-01 5 23527045 23527045 C A PRDM9 Silent p.G616G 0.11 TCGA-XP-A8T8-01 5 33441104 33441104 C G TARS 5'UTR 0.33 TCGA-XP-A8T8-01 5 61681734 61681734 T - KIF2A 3'Flank 0.21 TCGA-XP-A8T8-01 5 9063121 9063121 T G SEMA5A Missense_Mutation p.D799A 0.16 tolerated(0.09) probably_damaging(1) TCGA-XP-A8T8-01 6 100391010 100391010 G A MCHR2 Silent p.A134A 0.25 TCGA-XP-A8T8-01 6 125614053 125614053 T A HDDC2 Missense_Mutation p.E104D 0.56 tolerated(0.15) benign(0.012) TCGA-XP-A8T8-01 6 134491990 134491990 T C SGK1 Missense_Mutation p.I463V 0.32 tolerated(0.25) benign(0.011) TCGA-XP-A8T8-01 6 144800995 144800995 G T UTRN Silent p.A1128A 0.33 TCGA-XP-A8T8-01 6 151677302 151677302 G A AKAP12 3'UTR 0.56 TCGA-XP-A8T8-01 6 29323224 29323224 A T OR5V1 Missense_Mutation p.L250H 0.14 deleterious(0) probably_damaging(0.992) TCGA-XP-A8T8-01 6 33268057 33268057 T A TAPBP 3'Flank 0.24 TCGA-XP-A8T8-01 6 39893509 39893509 C T MOCS1 Missense_Mutation p.A111T 0.19 deleterious(0.02) possibly_damaging(0.863) TCGA-XP-A8T8-01 6 75840585 75840585 G C COL12A1 Missense_Mutation p.P2017R 0.36 benign(0.235) TCGA-XP-A8T8-01 7 140380866 140380866 C T ADCK2 Nonsense_Mutation p.Q412* 0.53 TCGA-XP-A8T8-01 7 144098371 144098371 C - NOBOX Frame_Shift_Del p.K205Sfs*63 0.19 TCGA-XP-A8T8-01 7 158664026 158664026 G A WDR60 Missense_Mutation p.R88K 0.38 tolerated(1) benign(0.001) TCGA-XP-A8T8-01 7 31682502 31682502 T A CCDC129 Missense_Mutation p.F532L 0.14 tolerated(0.72) benign(0.002) TCGA-XP-A8T8-01 7 38305167 38305167 G A TRGC1 Silent p.F38F 0.09 TCGA-XP-A8T8-01 7 44152463 44152463 G C AEBP1 Missense_Mutation p.G842R 0.10 deleterious(0.02) probably_damaging(0.969) TCGA-XP-A8T8-01 7 64530054 64530054 T C SNORA22 3'Flank 0.19 TCGA-XP-A8T8-01 7 75610443 75610443 C T POR Silent p.L198L 0.26 TCGA-XP-A8T8-01 8 13356564 13356564 C A DLC1 Missense_Mutation p.K339N 0.30 deleterious_low_confidence(0.01) possibly_damaging(0.511) TCGA-XP-A8T8-01 8 133859093 133859093 G A PHF20L1 3'UTR 0.25 TCGA-XP-A8T8-01 8 22368688 22368688 C G PPP3CC Missense_Mutation p.L192V 0.23 deleterious(0) possibly_damaging(0.88) TCGA-XP-A8T8-01 8 87751931 87751931 T C CNGB3 Missense_Mutation p.T55A 0.14 tolerated(0.37) benign(0.003) TCGA-XP-A8T8-01 9 35042298 35042298 G A C9orf131 Missense_Mutation p.G16E 0.35 tolerated(0.28) benign(0.136) TCGA-XP-A8T8-01 9 35811389 35811389 T A SPAG8 Missense_Mutation p.R218S 0.22 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-XP-A8T8-01 9 35811390 35811390 C G SPAG8 Missense_Mutation p.R218T 0.22 deleterious_low_confidence(0.05) benign(0.376) TCGA-XP-A8T8-01 9 79321817 79321817 T G PRUNE2 Missense_Mutation p.E1791D 0.29 tolerated(0.14) benign(0.179) TCGA-XP-A8T8-01 9 95610494 95610494 T C ZNF484 Missense_Mutation p.Y194C 0.84 tolerated(0.15) benign(0.005) TCGA-XP-A8T8-01 9 98242359 98242361 GCC TCCA PTCH1 Frame_Shift_Ins p.M319Ifs*118 0.09 TCGA-XP-A8T8-01 X 118604452 118604452 A G SLC25A5 Missense_Mutation p.M239V 0.60 deleterious(0.04) possibly_damaging(0.472) TCGA-XP-A8T8-01 X 12938288 12938288 T C TLR8 Missense_Mutation p.Y377H 0.65 deleterious(0) probably_damaging(0.993) TCGA-XP-A8T8-01 X 134167513 134167513 A G FAM127A 3'UTR 0.24 TCGA-XP-A8T8-01 X 144909318 144909318 C A TMEM257 Missense_Mutation p.F41L 0.81 tolerated_low_confidence(0.23) benign(0.294) TCGA-Z6-A8JD-01 10 1061784 1061784 G C GTPBP4 Missense_Mutation p.S567T 0.13 tolerated(0.14) benign(0.359) TCGA-Z6-A8JD-01 10 121685688 121685688 C T SEC23IP Silent p.C754C 0.09 TCGA-Z6-A8JD-01 10 123659471 123659471 G C ATE1 Intron 0.12 TCGA-Z6-A8JD-01 10 25465155 25465155 A T GPR158 Missense_Mutation p.Y269F 0.08 tolerated(0.78) benign(0.002) TCGA-Z6-A8JD-01 10 26482174 26482174 A C MYO3A Silent p.P1493P 0.07 TCGA-Z6-A8JD-01 10 51465318 51465318 G T AGAP7 Missense_Mutation p.L380I 0.20 tolerated(0.06) benign(0.334) TCGA-Z6-A8JD-01 10 63856031 63856031 C G ARID5B 3'UTR 0.18 TCGA-Z6-A8JD-01 10 88196064 88196064 T C WAPAL 3'UTR 0.19 TCGA-Z6-A8JD-01 10 88683192 88683192 G A BMPR1A Missense_Mutation p.E468K 0.09 deleterious(0) probably_damaging(0.998) TCGA-Z6-A8JD-01 10 94274755 94274755 C G IDE Missense_Mutation p.D236H 0.12 deleterious(0.01) possibly_damaging(0.894) TCGA-Z6-A8JD-01 11 123900508 123900508 T C OR10G8 Missense_Mutation p.F60S 0.04 deleterious(0) probably_damaging(0.955) TCGA-Z6-A8JD-01 11 132016295 132016295 C T NTM Missense_Mutation p.T96M 0.26 tolerated(0.1) probably_damaging(0.947) TCGA-Z6-A8JD-01 11 19246919 19246919 C G E2F8 Missense_Mutation p.G757A 0.10 tolerated(0.98) benign(0.007) TCGA-Z6-A8JD-01 11 55861330 55861330 C G OR8I2 Missense_Mutation p.L183V 0.30 tolerated(0.11) benign(0.275) TCGA-Z6-A8JD-01 11 61496471 61496471 C T DAGLA Silent p.L280L 0.34 TCGA-Z6-A8JD-01 11 62435298 62435298 C G METTL12 3'UTR 0.25 TCGA-Z6-A8JD-01 11 64081786 64081786 C T ESRRA Missense_Mutation p.P173L 0.14 tolerated(0.44) benign(0.001) TCGA-Z6-A8JD-01 11 65338969 65338969 C G SSSCA1 Missense_Mutation p.P122A 0.32 tolerated(0.09) benign(0.015) TCGA-Z6-A8JD-01 11 65339076 65339076 C G SSSCA1 Silent p.L157L 0.22 TCGA-Z6-A8JD-01 11 67232074 67232074 C G TMEM134 3'UTR 0.17 TCGA-Z6-A8JD-01 11 70218320 70218320 G C PPFIA1 Splice_Site p.X956_splice 0.13 TCGA-Z6-A8JD-01 11 7949268 7949268 G C OR10A6 Missense_Mutation p.I314M 0.23 tolerated(0.12) benign(0.007) TCGA-Z6-A8JD-01 11 83170250 83170250 T A DLG2 3'UTR 0.04 TCGA-Z6-A8JD-01 11 9068959 9068959 G C SCUBE2 Missense_Mutation p.S649C 0.19 tolerated(0.13) possibly_damaging(0.754) TCGA-Z6-A8JD-01 11 9336018 9336018 G C TMEM41B 5'UTR 0.38 TCGA-Z6-A8JD-01 11 94906420 94906420 C A SESN3 Nonstop_Mutation p.*493Lext*18 0.11 TCGA-Z6-A8JD-01 11 9759811 9759811 C T SWAP70 Nonsense_Mutation p.Q378* 0.27 TCGA-Z6-A8JD-01 12 101706052 101706052 C G UTP20 Missense_Mutation p.I850M 0.05 deleterious(0.02) possibly_damaging(0.495) TCGA-Z6-A8JD-01 12 10851899 10851899 A G YBX3 3'UTR 0.24 TCGA-Z6-A8JD-01 12 120128164 120128164 C T CIT Missense_Mutation p.R1993Q 0.16 tolerated_low_confidence(0.07) benign(0.004) TCGA-Z6-A8JD-01 12 121205249 121205249 C T SPPL3 Silent p.G307G 0.09 TCGA-Z6-A8JD-01 12 122618301 122618301 C - MLXIP Frame_Shift_Del p.F501Lfs*8 0.13 TCGA-Z6-A8JD-01 12 124232204 124232204 G C ATP6V0A2 Missense_Mutation p.M552I 0.04 deleterious(0) possibly_damaging(0.718) TCGA-Z6-A8JD-01 12 130847365 130847365 C G PIWIL1 Silent p.L675L 0.06 TCGA-Z6-A8JD-01 12 133277856 133277856 C T PXMP2 Silent p.F140F 0.19 TCGA-Z6-A8JD-01 12 23687057 23687057 C G SOX5 3'UTR 0.14 TCGA-Z6-A8JD-01 12 41408098 41408098 G C CNTN1 Missense_Mutation p.A728P 0.06 deleterious(0.01) benign(0.275) TCGA-Z6-A8JD-01 12 46349783 46349783 C G SCAF11 Intron 0.12 TCGA-Z6-A8JD-01 12 48174229 48174229 T C SLC48A1 3'UTR 0.22 TCGA-Z6-A8JD-01 12 50474327 50474327 G C ASIC1 Missense_Mutation p.E418Q 0.05 deleterious(0) probably_damaging(0.976) TCGA-Z6-A8JD-01 12 52681085 52681085 C A KRT81 Missense_Mutation p.V350L 0.16 deleterious(0.02) benign(0.17) TCGA-Z6-A8JD-01 12 52884424 52884424 C T KRT6A Missense_Mutation p.E336K 0.07 deleterious(0) probably_damaging(0.983) TCGA-Z6-A8JD-01 12 52908628 52908628 C T KRT5 3'UTR 0.08 TCGA-Z6-A8JD-01 12 53294964 53294964 G A KRT8 Silent p.N219N 0.18 TCGA-Z6-A8JD-01 12 55360994 55360994 C T TESPA1 Missense_Mutation p.E95K 0.11 deleterious(0) possibly_damaging(0.779) TCGA-Z6-A8JD-01 12 57423252 57423252 G C MYO1A Silent p.L948L 0.22 TCGA-Z6-A8JD-01 12 6669279 6669279 G A NOP2 Missense_Mutation p.P625S 0.08 deleterious(0.03) possibly_damaging(0.766) TCGA-Z6-A8JD-01 12 91449833 91449833 G C KERA Missense_Mutation p.L76V 0.19 tolerated(0.17) probably_damaging(0.951) TCGA-Z6-A8JD-01 13 114535349 114535349 C T GAS6 Missense_Mutation p.E356K 0.11 deleterious(0) probably_damaging(0.997) TCGA-Z6-A8JD-01 14 100801253 100801253 C G WARS Missense_Mutation p.E459Q 0.22 tolerated(0.57) benign(0.003) TCGA-Z6-A8JD-01 14 102659849 102659849 G C WDR20 Intron 0.05 TCGA-Z6-A8JD-01 14 102695441 102695441 C G MOK 3'UTR 0.09 TCGA-Z6-A8JD-01 14 105404547 105404547 C G AHNAK2 Missense_Mutation p.E5747D 0.10 benign(0.083) TCGA-Z6-A8JD-01 14 23876283 23876283 C G MYH6 Missense_Mutation p.K50N 0.16 tolerated(0.17) benign(0.143) TCGA-Z6-A8JD-01 14 31355479 31355479 G A COCH Missense_Mutation p.D480N 0.13 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JD-01 14 36277997 36277997 C G RALGAPA1 Missense_Mutation p.Q15H 0.22 deleterious(0) probably_damaging(0.997) TCGA-Z6-A8JD-01 14 38680415 38680415 C T SSTR1 3'UTR 0.14 TCGA-Z6-A8JD-01 14 38724231 38724231 C A CLEC14A Missense_Mutation p.V333F 0.15 tolerated(0.06) possibly_damaging(0.748) TCGA-Z6-A8JD-01 14 42356105 42356105 C G LRFN5 Missense_Mutation p.H93D 0.21 tolerated(0.16) benign(0.281) TCGA-Z6-A8JD-01 14 47504275 47504275 G T MDGA2 Silent p.T586T 0.15 TCGA-Z6-A8JD-01 14 51223236 51223236 C T NIN Silent p.E1504E 0.12 TCGA-Z6-A8JD-01 14 55644016 55644016 C G DLGAP5 Missense_Mutation p.L271F 0.35 deleterious(0) possibly_damaging(0.555) TCGA-Z6-A8JD-01 14 58690395 58690395 A C ACTR10 Missense_Mutation p.K230N 0.10 tolerated(0.08) possibly_damaging(0.511) TCGA-Z6-A8JD-01 14 60069967 60069967 G A RTN1 Missense_Mutation p.S731L 0.10 tolerated(0.08) probably_damaging(0.997) TCGA-Z6-A8JD-01 14 61278748 61278748 G A MNAT1 Missense_Mutation p.R155Q 0.06 tolerated(0.5) benign(0.028) TCGA-Z6-A8JD-01 14 62567939 62567939 C G SYT16 3'UTR 0.32 TCGA-Z6-A8JD-01 14 65438753 65438753 G A RAB15 Silent p.I14I 0.06 TCGA-Z6-A8JD-01 14 74371761 74371761 G A ZNF410 Silent p.L313L 0.09 TCGA-Z6-A8JD-01 14 88938602 88938602 C T PTPN21 Missense_Mutation p.A953T 0.16 deleterious(0) probably_damaging(1) TCGA-Z6-A8JD-01 15 25605546 25605546 G C UBE3A Missense_Mutation p.I582M 0.13 deleterious(0) possibly_damaging(0.82) TCGA-Z6-A8JD-01 15 34064135 34064135 C G RYR3 Nonsense_Mutation p.S2944* 0.11 TCGA-Z6-A8JD-01 15 42057139 42057139 G A MGA Silent p.P2600P 0.35 TCGA-Z6-A8JD-01 15 42444892 42444892 C A PLA2G4F Nonsense_Mutation p.E199* 0.10 TCGA-Z6-A8JD-01 15 67813772 67813772 G A C15orf61 Silent p.Q62Q 0.12 TCGA-Z6-A8JD-01 15 73418907 73418907 G A NEO1 Missense_Mutation p.E292K 0.12 tolerated(0.25) benign(0.021) TCGA-Z6-A8JD-01 15 74654407 74654407 C G CYP11A1 Intron 0.11 TCGA-Z6-A8JD-01 15 90176221 90176221 C G KIF7 Missense_Mutation p.E909Q 0.23 deleterious(0) possibly_damaging(0.557) TCGA-Z6-A8JD-01 15 91827399 91827399 G A SV2B Silent p.G552G 0.11 TCGA-Z6-A8JD-01 16 1412296 1412296 C T GNPTG Silent p.L167L 0.22 TCGA-Z6-A8JD-01 16 15714339 15714339 G A KIAA0430 Silent p.L897L 0.06 TCGA-Z6-A8JD-01 16 21042473 21042473 T C DNAH3 Missense_Mutation p.E1778G 0.12 tolerated(0.06) benign(0.111) TCGA-Z6-A8JD-01 16 223305 223305 C T HBA2 Missense_Mutation p.R93W 0.11 deleterious(0) benign(0.39) TCGA-Z6-A8JD-01 16 238990 238990 C G LUC7L 3'UTR 0.16 TCGA-Z6-A8JD-01 16 25251879 25251879 C G ZKSCAN2 Missense_Mutation p.R721T 0.06 deleterious(0.02) possibly_damaging(0.798) TCGA-Z6-A8JD-01 16 31765249 31765249 A G ZNF720 Intron 0.21 TCGA-Z6-A8JD-01 16 5106102 5106102 C T C16orf89 Missense_Mutation p.E239K 0.31 tolerated(0.05) benign(0.132) TCGA-Z6-A8JD-01 16 55705923 55705923 C T SLC6A2 Silent p.L160L 0.19 TCGA-Z6-A8JD-01 16 57917826 57917826 G A CNGB1 3'UTR 0.21 TCGA-Z6-A8JD-01 16 597619 597619 G A CAPN15 Missense_Mutation p.E261K 0.28 tolerated_low_confidence(0.19) benign(0.141) TCGA-Z6-A8JD-01 16 67577114 67577114 C T FAM65A Missense_Mutation p.P829S 0.18 deleterious(0.05) possibly_damaging(0.641) TCGA-Z6-A8JD-01 16 70796488 70796488 G A VAC14 Silent p.S442S 0.25 TCGA-Z6-A8JD-01 16 740071 740071 G A WDR24 5'UTR 0.12 TCGA-Z6-A8JD-01 16 88804229 88804229 A T PIEZO1 Intron 0.15 TCGA-Z6-A8JD-01 16 89348761 89348761 G A ANKRD11 Silent p.L1397L 0.17 TCGA-Z6-A8JD-01 16 89348762 89348762 G A ANKRD11 Silent p.F1396F 0.17 TCGA-Z6-A8JD-01 16 89348979 89348979 G C ANKRD11 Missense_Mutation p.S1324C 0.13 possibly_damaging(0.815) TCGA-Z6-A8JD-01 16 89828391 89828391 G T FANCA Missense_Mutation p.Q940K 0.23 tolerated(0.26) benign(0.042) TCGA-Z6-A8JD-01 17 10293733 10293733 C T MYH8 3'UTR 0.31 TCGA-Z6-A8JD-01 17 16527278 16527278 C T ZNF624 Missense_Mutation p.E308K 0.14 deleterious(0.01) probably_damaging(0.987) TCGA-Z6-A8JD-01 17 29231387 29231387 G C TEFM Silent p.L64L 0.08 TCGA-Z6-A8JD-01 17 39768500 39768500 C A KRT16 Silent p.V147V 0.10 TCGA-Z6-A8JD-01 17 43344462 43344465 CTCA - SPATA32 5'Flank 0.12 TCGA-Z6-A8JD-01 17 46687889 46687889 C T HOXB7 Missense_Mutation p.R131Q 0.07 tolerated(0.07) possibly_damaging(0.862) TCGA-Z6-A8JD-01 17 4686468 4686468 C G TM4SF5 3'UTR 0.26 TCGA-Z6-A8JD-01 17 47103868 47103868 A G IGF2BP1 Missense_Mutation p.N109S 0.25 tolerated(0.29) benign(0.1) TCGA-Z6-A8JD-01 17 59533820 59533820 G A TBX4 5'UTR 0.37 TCGA-Z6-A8JD-01 17 68175037 68175037 G A KCNJ2 3'UTR 0.09 TCGA-Z6-A8JD-01 17 6909289 6909289 G A ALOX12 Missense_Mutation p.G454E 0.10 tolerated(0.11) benign(0.034) TCGA-Z6-A8JD-01 17 73827202 73827202 C T UNC13D Missense_Mutation p.A868T 0.32 tolerated(0.96) benign(0.021) TCGA-Z6-A8JD-01 17 7494747 7494747 G A FXR2 3'UTR 0.06 TCGA-Z6-A8JD-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.22 tolerated(0.13) possibly_damaging(0.631) TCGA-Z6-A8JD-01 17 76969204 76969204 C G LGALS3BP Silent p.V159V 0.39 TCGA-Z6-A8JD-01 17 79409094 79409094 C T RP11-1055B8.7 Missense_Mutation p.A240V 0.11 benign(0.011) TCGA-Z6-A8JD-01 17 80790253 80790253 T - ZNF750 Frame_Shift_Del p.K26Nfs*19 0.25 TCGA-Z6-A8JD-01 18 11852310 11852310 A G CHMP1B 3'UTR 0.16 TCGA-Z6-A8JD-01 18 12030535 12030535 C T IMPA2 3'UTR 0.12 TCGA-Z6-A8JD-01 18 20932234 20932234 G A TMEM241 Missense_Mutation p.L231F 0.32 deleterious(0.04) possibly_damaging(0.659) TCGA-Z6-A8JD-01 18 43510751 43510751 T C EPG5 Missense_Mutation p.N768S 0.18 tolerated(0.09) probably_damaging(0.953) TCGA-Z6-A8JD-01 18 48256223 48256223 G A MAPK4 Silent p.%3D 0.26 TCGA-Z6-A8JD-01 18 59749943 59749943 C G PIGN Missense_Mutation p.E847Q 0.16 tolerated(0.16) benign(0.196) TCGA-Z6-A8JD-01 19 14520777 14520777 G - DDX39A Intron 0.10 TCGA-Z6-A8JD-01 19 14717876 14717876 G A CLEC17A Silent p.G322G 0.17 TCGA-Z6-A8JD-01 19 15288489 15288489 C G NOTCH3 Missense_Mutation p.C1417S 0.15 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JD-01 19 15734900 15734900 G C CYP4F8 RNA 0.19 TCGA-Z6-A8JD-01 19 20229526 20229526 A T ZNF90 Missense_Mutation p.K388M 0.08 deleterious(0.02) probably_damaging(0.934) TCGA-Z6-A8JD-01 19 22363402 22363402 C A ZNF676 Missense_Mutation p.A373S 0.13 tolerated(0.06) benign(0.094) TCGA-Z6-A8JD-01 19 23544105 23544105 G C ZNF91 Nonsense_Mutation p.S559* 0.12 TCGA-Z6-A8JD-01 19 23544477 23544477 T G ZNF91 Missense_Mutation p.K435T 0.11 tolerated(0.11) possibly_damaging(0.734) TCGA-Z6-A8JD-01 19 23938284 23938284 G C ZNF681 Missense_Mutation p.Q25E 0.16 deleterious(0) possibly_damaging(0.523) TCGA-Z6-A8JD-01 19 2425186 2425186 C T TMPRSS9 Silent p.I934I 0.19 TCGA-Z6-A8JD-01 19 3162843 3162843 G T GNA15 Silent p.T317T 0.13 TCGA-Z6-A8JD-01 19 3359661 3359661 C G NFIC 5'UTR 0.11 TCGA-Z6-A8JD-01 19 36035690 36035690 G A GAPDHS Intron 0.52 TCGA-Z6-A8JD-01 19 36853058 36853058 T C ZFP14 Missense_Mutation p.Y31C 0.06 deleterious(0) possibly_damaging(0.873) TCGA-Z6-A8JD-01 19 37310963 37310963 C G ZNF790 Missense_Mutation p.E95Q 0.07 deleterious(0.01) benign(0.075) TCGA-Z6-A8JD-01 19 37488248 37488248 G T ZNF568 Missense_Mutation p.R488L 0.19 tolerated(0.27) probably_damaging(0.999) TCGA-Z6-A8JD-01 19 44130331 44130331 G A CADM4 Silent p.N203N 0.12 TCGA-Z6-A8JD-01 19 44732371 44732371 G C ZNF227 Intron 0.27 TCGA-Z6-A8JD-01 19 45976867 45976867 C T FOSB 3'UTR 0.25 TCGA-Z6-A8JD-01 19 49484891 49484891 C A GYS1 Silent p.V355V 0.12 TCGA-Z6-A8JD-01 19 7505303 7505303 G A ARHGEF18 Missense_Mutation p.M159I 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-Z6-A8JD-01 19 9929551 9929551 G C FBXL12 5'UTR 0.18 TCGA-Z6-A8JD-01 1 103491477 103491477 C A COL11A1 Intron 0.07 TCGA-Z6-A8JD-01 1 10708141 10708141 G A CASZ1 Missense_Mutation p.P1072S 0.19 tolerated(0.15) benign(0.027) TCGA-Z6-A8JD-01 1 110453483 110453483 G C CSF1 5'UTR 0.11 TCGA-Z6-A8JD-01 1 117156526 117156526 G A IGSF3 Silent p.L231L 0.10 TCGA-Z6-A8JD-01 1 152883367 152883367 T A IVL Missense_Mutation p.L365H 0.14 tolerated(0.14) benign(0.444) TCGA-Z6-A8JD-01 1 157650813 157650813 T G FCRL3 Missense_Mutation p.K639Q 0.16 tolerated(0.07) benign(0.035) TCGA-Z6-A8JD-01 1 160054107 160054107 C G KCNJ9 Missense_Mutation p.A96G 0.05 tolerated(0.46) benign(0.015) TCGA-Z6-A8JD-01 1 160388955 160388955 C G VANGL2 Missense_Mutation p.S119C 0.33 deleterious(0.02) benign(0.007) TCGA-Z6-A8JD-01 1 180243439 180243439 C G LHX4 Missense_Mutation p.Q300E 0.23 tolerated(0.51) benign(0.007) TCGA-Z6-A8JD-01 1 200378496 200378496 G C ZNF281 Missense_Mutation p.S113W 0.23 deleterious(0.01) benign(0.277) TCGA-Z6-A8JD-01 1 214169993 214169993 G A PROX1 Missense_Mutation p.A39T 0.12 tolerated_low_confidence(0.12) benign(0.272) TCGA-Z6-A8JD-01 1 229771164 229771164 G T URB2 Silent p.T268T 0.15 TCGA-Z6-A8JD-01 1 235357397 235357397 C G ARID4B Missense_Mutation p.D686H 0.08 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-Z6-A8JD-01 1 237052504 237052504 C G MTR Missense_Mutation p.Q959E 0.19 tolerated(0.05) benign(0) TCGA-Z6-A8JD-01 1 240371346 240371346 C A FMN2 Silent p.P1078P 0.19 TCGA-Z6-A8JD-01 1 247921358 247921358 C G OR1C1 Silent p.V117V 0.10 TCGA-Z6-A8JD-01 1 248344136 248344136 C T OR2M2 Silent p.P283P 0.08 TCGA-Z6-A8JD-01 1 35472675 35472675 G A ZMYM6 Nonsense_Mutation p.R564* 0.18 TCGA-Z6-A8JD-01 1 35563128 35563128 C A ZMYM1 Nonsense_Mutation p.S127* 0.15 TCGA-Z6-A8JD-01 1 36383283 36383283 G A AGO1 Silent p.Q706Q 0.25 TCGA-Z6-A8JD-01 1 38274899 38274899 C T C1orf122 3'UTR 0.15 TCGA-Z6-A8JD-01 1 39341814 39341814 G C GJA9 5'UTR 0.12 TCGA-Z6-A8JD-01 1 40702082 40702082 C T RLF Missense_Mutation p.L570F 0.08 deleterious(0.01) probably_damaging(0.981) TCGA-Z6-A8JD-01 1 54518838 54518838 G T TMEM59 Silent p.L8L 0.23 TCGA-Z6-A8JD-01 1 64089294 64089294 G C PGM1 Missense_Mutation p.E55Q 0.10 tolerated(0.13) benign(0.049) TCGA-Z6-A8JD-01 1 78408248 78408248 C A NEXN Missense_Mutation p.L588I 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-Z6-A8JD-01 1 85624705 85624705 C G SYDE2 Missense_Mutation p.E1105Q 0.20 deleterious(0.02) possibly_damaging(0.623) TCGA-Z6-A8JD-01 20 10653641 10653641 G T JAG1 Nonsense_Mutation p.S32* 0.21 TCGA-Z6-A8JD-01 20 25295561 25295561 C T ABHD12 Missense_Mutation p.G207S 0.14 deleterious(0) probably_damaging(1) TCGA-Z6-A8JD-01 20 31017787 31017787 A G ASXL1 Missense_Mutation p.I217V 0.14 tolerated(0.16) benign(0.091) TCGA-Z6-A8JD-01 20 33581979 33581979 C G MYH7B Missense_Mutation p.I867M 0.06 possibly_damaging(0.61) TCGA-Z6-A8JD-01 20 33851658 33851658 C T MMP24 Silent p.S294S 0.09 TCGA-Z6-A8JD-01 20 34130306 34130306 G A ERGIC3 Silent p.L68L 0.26 TCGA-Z6-A8JD-01 20 3734504 3734504 G C C20orf27 3'UTR 0.23 TCGA-Z6-A8JD-01 20 43115331 43115331 G C TTPAL Missense_Mutation p.E245D 0.13 tolerated(0.09) possibly_damaging(0.676) TCGA-Z6-A8JD-01 20 50235275 50235275 C A ATP9A Missense_Mutation p.R759L 0.07 deleterious(0.02) probably_damaging(0.961) TCGA-Z6-A8JD-01 20 62192573 62192573 G A HELZ2 Silent p.V2336V 0.12 TCGA-Z6-A8JD-01 21 44153470 44153470 T C PDE9A Missense_Mutation p.F168L 0.20 tolerated(0.36) possibly_damaging(0.742) TCGA-Z6-A8JD-01 21 47669700 47669700 G C MCM3AP Intron 0.09 TCGA-Z6-A8JD-01 22 20825674 20825674 T A KLHL22 Missense_Mutation p.N119I 0.48 deleterious(0.01) benign(0.361) TCGA-Z6-A8JD-01 22 21174836 21174836 G C PI4KA Missense_Mutation p.Q174E 0.11 tolerated(0.63) benign(0.028) TCGA-Z6-A8JD-01 22 23264889 23264889 G A IGLC7 Nonsense_Mutation p.W42* 0.25 TCGA-Z6-A8JD-01 22 24583631 24583631 G C SUSD2 Missense_Mutation p.E662Q 0.26 tolerated(0.61) benign(0.004) TCGA-Z6-A8JD-01 22 32009828 32009828 C A SFI1 Missense_Mutation p.H995N 0.11 tolerated(0.31) benign(0.164) TCGA-Z6-A8JD-01 22 39714546 39714546 G C RPL3 Missense_Mutation p.R19G 0.06 deleterious(0) possibly_damaging(0.798) TCGA-Z6-A8JD-01 22 41940236 41940236 G A POLR3H 5'UTR 0.19 TCGA-Z6-A8JD-01 22 47108115 47108115 C G CERK Missense_Mutation p.R152T 0.03 tolerated(0.3) benign(0.016) TCGA-Z6-A8JD-01 22 50885091 50885091 G A SBF1 3'UTR 0.15 TCGA-Z6-A8JD-01 2 109125700 109125700 G C GCC2 3'UTR 0.11 TCGA-Z6-A8JD-01 2 158300421 158300421 C T CYTIP Missense_Mutation p.D38N 0.11 tolerated(0.07) probably_damaging(0.998) TCGA-Z6-A8JD-01 2 161143552 161143552 C G RBMS1 Missense_Mutation p.Q228H 0.14 deleterious(0.03) probably_damaging(0.956) TCGA-Z6-A8JD-01 2 163003871 163003871 C G GCG Missense_Mutation p.K82N 0.12 deleterious(0) benign(0.099) TCGA-Z6-A8JD-01 2 170940487 170940487 A G UBR3 3'UTR 0.32 TCGA-Z6-A8JD-01 2 174131459 174131459 G A MLTK Missense_Mutation p.R795H 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.863) TCGA-Z6-A8JD-01 2 178305725 178305725 C G AGPS Missense_Mutation p.L224V 0.28 tolerated(0.05) possibly_damaging(0.457) TCGA-Z6-A8JD-01 2 223520793 223520793 G A FARSB 5'UTR 0.31 TCGA-Z6-A8JD-01 2 242179158 242179158 C T HDLBP Silent p.L823L 0.32 TCGA-Z6-A8JD-01 2 42559543 42559543 G A EML4 3'UTR 0.09 TCGA-Z6-A8JD-01 2 43514140 43514140 C T THADA Missense_Mutation p.E1691K 0.06 deleterious(0.02) benign(0.071) TCGA-Z6-A8JD-01 2 48698298 48698298 A G PPP1R21 Missense_Mutation p.S324G 0.12 tolerated(0.14) benign(0.003) TCGA-Z6-A8JD-01 2 55489519 55489519 T C MTIF2 Silent p.K88K 0.12 TCGA-Z6-A8JD-01 2 97357862 97357862 T C FER1L5 RNA 0.06 TCGA-Z6-A8JD-01 2 97845601 97845601 A T ANKRD36 Missense_Mutation p.T556S 0.10 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-Z6-A8JD-01 3 108409884 108409884 G A DZIP3 Intron 0.17 TCGA-Z6-A8JD-01 3 126260800 126260800 G A CHST13 Silent p.P135P 0.15 TCGA-Z6-A8JD-01 3 128198513 128198513 C T GATA2 3'UTR 0.20 TCGA-Z6-A8JD-01 3 129009630 129009630 C G HMCES Missense_Mutation p.Q146E 0.27 deleterious(0.02) possibly_damaging(0.612) TCGA-Z6-A8JD-01 3 130889714 130889714 C G NEK11 Missense_Mutation p.S461C 0.10 tolerated(0.08) benign(0.005) TCGA-Z6-A8JD-01 3 136699269 136699269 G A IL20RB Intron 0.25 TCGA-Z6-A8JD-01 3 137928707 137928707 G C ARMC8 Missense_Mutation p.D18H 0.09 deleterious(0) probably_damaging(0.979) TCGA-Z6-A8JD-01 3 146251305 146251305 T G PLSCR1 Missense_Mutation p.N16H 0.12 tolerated(0.36) benign(0.001) TCGA-Z6-A8JD-01 3 169711087 169711087 G A SEC62 3'UTR 0.07 TCGA-Z6-A8JD-01 3 172115069 172115069 G T FNDC3B Missense_Mutation p.G1140V 0.15 deleterious(0) probably_damaging(0.997) TCGA-Z6-A8JD-01 3 184005730 184005730 G C ECE2 Missense_Mutation p.E575Q 0.21 tolerated(0.16) benign(0.14) TCGA-Z6-A8JD-01 3 45837804 45837804 C G SLC6A20 Missense_Mutation p.Q36H 0.14 deleterious(0.01) probably_damaging(0.997) TCGA-Z6-A8JD-01 3 48423318 48423318 C G FBXW12 Missense_Mutation p.L372V 0.13 tolerated(0.38) possibly_damaging(0.803) TCGA-Z6-A8JD-01 3 48455320 48455320 G C PLXNB1 Missense_Mutation p.S1457C 0.05 deleterious(0.01) benign(0.155) TCGA-Z6-A8JD-01 3 49044854 49044854 C G WDR6 Missense_Mutation p.S27W 0.14 deleterious_low_confidence(0.01) benign(0.147) TCGA-Z6-A8JD-01 3 58520773 58520773 C T ACOX2 Missense_Mutation p.D21N 0.24 deleterious(0) probably_damaging(0.973) TCGA-Z6-A8JD-01 3 65342522 65342522 G T MAGI1 Missense_Mutation p.A1307E 0.27 tolerated(0.96) benign(0.198) TCGA-Z6-A8JD-01 3 69088142 69088142 C A TMF1 Nonsense_Mutation p.E616* 0.27 TCGA-Z6-A8JD-01 3 93772169 93772169 C G ARL13B 3'UTR 0.18 TCGA-Z6-A8JD-01 4 2696769 2696769 G A FAM193A Silent p.E772E 0.08 TCGA-Z6-A8JD-01 4 41633278 41633278 C T LIMCH1 Intron 0.05 TCGA-Z6-A8JD-01 4 6082040 6082040 C G JAKMIP1 Splice_Site p.X368_splice 0.10 TCGA-Z6-A8JD-01 4 7056573 7056573 C G TADA2B Nonsense_Mutation p.S352* 0.06 TCGA-Z6-A8JD-01 4 71889340 71889340 C G DCK Missense_Mutation p.Q156E 0.05 deleterious(0) benign(0.084) TCGA-Z6-A8JD-01 4 85696107 85696107 C G WDFY3 Missense_Mutation p.M1540I 0.09 deleterious(0.01) benign(0.027) TCGA-Z6-A8JD-01 4 86916190 86916190 G A ARHGAP24 Silent p.R461R 0.21 TCGA-Z6-A8JD-01 4 87684273 87684273 C G PTPN13 Nonsense_Mutation p.S1316* 0.12 TCGA-Z6-A8JD-01 5 127594174 127594174 C A FBN2 3'UTR 0.15 TCGA-Z6-A8JD-01 5 1344846 1344846 G A CLPTM1L Silent p.S37S 0.12 TCGA-Z6-A8JD-01 5 136313840 136313840 G A SPOCK1 3'UTR 0.12 TCGA-Z6-A8JD-01 5 139682640 139682640 G C PFDN1 Missense_Mutation p.L7V 0.22 deleterious(0.03) benign(0.232) TCGA-Z6-A8JD-01 5 139743751 139743751 G A SLC4A9 Missense_Mutation p.R480H 0.20 deleterious(0.03) benign(0.262) TCGA-Z6-A8JD-01 5 175795982 175795982 G C ARL10 Missense_Mutation p.K186N 0.19 deleterious(0) probably_damaging(0.936) TCGA-Z6-A8JD-01 5 175936545 175936545 G C FAF2 3'UTR 0.26 TCGA-Z6-A8JD-01 5 178413676 178413676 G A GRM6 Missense_Mutation p.R527W 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-Z6-A8JD-01 5 32789284 32789284 C G NPR3 3'UTR 0.23 TCGA-Z6-A8JD-01 5 60053363 60053363 C T ELOVL7 Nonsense_Mutation p.W203* 0.07 TCGA-Z6-A8JD-01 5 65088483 65088483 G A NLN Splice_Site p.X509_splice 0.08 TCGA-Z6-A8JD-01 5 70809019 70809019 C G BDP1 Missense_Mutation p.L1419V 0.06 deleterious(0.02) probably_damaging(0.996) TCGA-Z6-A8JD-01 5 73168821 73168821 C T ARHGEF28 Intron 0.16 TCGA-Z6-A8JD-01 5 74526426 74526426 C G ANKRD31 Missense_Mutation p.E47Q 0.16 deleterious(0.01) benign(0.106) TCGA-Z6-A8JD-01 5 82818043 82818043 G A VCAN Silent p.A1306A 0.23 TCGA-Z6-A8JD-01 5 93856381 93856381 T G KIAA0825 Missense_Mutation p.E181A 0.16 deleterious(0.02) possibly_damaging(0.547) TCGA-Z6-A8JD-01 6 13281263 13281263 C T TBC1D7 Intron 0.16 TCGA-Z6-A8JD-01 6 138751558 138751558 C T NHSL1 Silent p.E1312E 0.16 TCGA-Z6-A8JD-01 6 138751653 138751653 C T NHSL1 Missense_Mutation p.E1281K 0.30 tolerated(0.2) benign(0.044) TCGA-Z6-A8JD-01 6 138754450 138754450 G A NHSL1 Silent p.L348L 0.23 TCGA-Z6-A8JD-01 6 159187344 159187344 A C EZR 3'UTR 0.17 TCGA-Z6-A8JD-01 6 161071369 161071369 C T LPA Splice_Site p.X70_splice 0.04 TCGA-Z6-A8JD-01 6 18255979 18255979 G C DEK Missense_Mutation p.P186A 0.07 deleterious(0) probably_damaging(0.993) TCGA-Z6-A8JD-01 6 26225833 26225833 C T HIST1H3E 3'UTR 0.21 TCGA-Z6-A8JD-01 6 29761162 29761162 C G HLA-V Intron 0.14 TCGA-Z6-A8JD-01 6 30652519 30652519 G T PPP1R18 Missense_Mutation p.P426Q 0.25 tolerated_low_confidence(0.07) possibly_damaging(0.708) TCGA-Z6-A8JD-01 6 34574418 34574418 G C C6orf106 Missense_Mutation p.Q259E 0.10 deleterious_low_confidence(0.04) benign(0.009) TCGA-Z6-A8JD-01 6 37414120 37414120 G A CMTR1 Silent p.R113R 0.13 TCGA-Z6-A8JD-01 6 46554852 46554852 G C CYP39A1 Missense_Mutation p.F404L 0.25 deleterious(0) possibly_damaging(0.856) TCGA-Z6-A8JD-01 6 52103596 52103596 G C IL17F Missense_Mutation p.I62M 0.19 deleterious(0.04) benign(0.445) TCGA-Z6-A8JD-01 7 103155684 103155684 G A RELN Silent p.A2689A 0.13 TCGA-Z6-A8JD-01 7 107789577 107789577 G A NRCAM 3'UTR 0.05 TCGA-Z6-A8JD-01 7 108524135 108524135 C T C7orf66 Missense_Mutation p.A93T 0.21 deleterious_low_confidence(0.01) benign(0.035) TCGA-Z6-A8JD-01 7 141796214 141796214 G A MGAM Missense_Mutation p.R1668H 0.05 deleterious(0.03) benign(0) TCGA-Z6-A8JD-01 7 149477372 149477372 C T SSPO RNA 0.17 TCGA-Z6-A8JD-01 7 17832356 17832356 G A SNX13 3'UTR 0.07 TCGA-Z6-A8JD-01 7 29727025 29727025 T C DPY19L2P3 Intron 0.13 TCGA-Z6-A8JD-01 7 6370417 6370417 T C FAM220A Silent p.E123E 0.11 TCGA-Z6-A8JD-01 7 65444728 65444728 C G GUSB Silent p.L189L 0.18 TCGA-Z6-A8JD-01 7 72413681 72413681 C T POM121 Missense_Mutation p.P785L 0.06 deleterious(0.05) benign(0.11) TCGA-Z6-A8JD-01 7 73030405 73030405 G A MLXIPL Silent p.I132I 0.17 TCGA-Z6-A8JD-01 7 86416063 86416063 G A GRM3 Missense_Mutation p.G319S 0.10 deleterious(0.01) possibly_damaging(0.835) TCGA-Z6-A8JD-01 7 93538863 93538863 C G GNGT1 Intron 0.13 TCGA-Z6-A8JD-01 7 938496 938496 C G ADAP1 3'UTR 0.18 TCGA-Z6-A8JD-01 8 101721918 101721918 T C PABPC1 Silent p.V338V 0.19 TCGA-Z6-A8JD-01 8 105260958 105260958 C G RIMS2 Missense_Mutation p.S1169C 0.17 deleterious_low_confidence(0) possibly_damaging(0.754) TCGA-Z6-A8JD-01 8 116680850 116680850 G A TRPS1 5'UTR 0.22 TCGA-Z6-A8JD-01 8 12946153 12946153 C G DLC1 Missense_Mutation p.E1379Q 0.13 tolerated(0.25) probably_damaging(0.992) TCGA-Z6-A8JD-01 8 132982840 132982840 C A EFR3A Missense_Mutation p.S370Y 0.10 tolerated(0.06) benign(0.382) TCGA-Z6-A8JD-01 8 135669872 135669872 T A ZFAT Missense_Mutation p.D43V 0.32 deleterious(0) possibly_damaging(0.598) TCGA-Z6-A8JD-01 8 144403488 144403488 G A TOP1MT Silent p.L343L 0.26 TCGA-Z6-A8JD-01 8 144773832 144773832 G A ZNF707 Missense_Mutation p.E69K 0.05 tolerated(0.81) benign(0.212) TCGA-Z6-A8JD-01 8 17813047 17813047 G C PCM1 Missense_Mutation p.V453L 0.21 tolerated(0.4) benign(0.016) TCGA-Z6-A8JD-01 8 22049619 22049620 TA - BMP1 Frame_Shift_Del p.Y379Cfs*24 0.12 TCGA-Z6-A8JD-01 8 77777019 77777019 T A ZFHX4 3'UTR 0.18 TCGA-Z6-A8JD-01 8 86057866 86057866 G A LRRCC1 3'UTR 0.10 TCGA-Z6-A8JD-01 8 87076243 87076243 G C PSKH2 Missense_Mutation p.T268R 0.08 deleterious(0.01) possibly_damaging(0.756) TCGA-Z6-A8JD-01 8 95653507 95653507 C A ESRP1 5'UTR 0.06 TCGA-Z6-A8JD-01 9 111641030 111641030 C A IKBKAP Silent p.A1191A 0.22 TCGA-Z6-A8JD-01 9 119976864 119976864 T G ASTN2 Missense_Mutation p.Q263P 0.38 tolerated_low_confidence(0.08) unknown(0) TCGA-Z6-A8JD-01 9 123870109 123870109 G C CNTRL Missense_Mutation p.E280Q 0.09 probably_damaging(0.999) TCGA-Z6-A8JD-01 9 131235307 131235307 G A ODF2 Missense_Mutation p.G233R 0.10 tolerated(0.32) benign(0.021) TCGA-Z6-A8JD-01 9 133996359 133996359 C G AIF1L 3'UTR 0.22 TCGA-Z6-A8JD-01 9 139342717 139342717 G A SEC16A Intron 0.19 TCGA-Z6-A8JD-01 9 139973475 139973475 G T UAP1L1 Nonsense_Mutation p.E240* 0.25 TCGA-Z6-A8JD-01 9 2161902 2161902 A G SMARCA2 Missense_Mutation p.R1400G 0.20 benign(0.152) TCGA-Z6-A8JD-01 X 122318457 122318457 G A GRIA3 Missense_Mutation p.G24S 0.35 tolerated_low_confidence(0.12) possibly_damaging(0.855) TCGA-Z6-A8JD-01 X 134232496 134232496 C T LINC00087 RNA 0.05 TCGA-Z6-A8JD-01 X 134716221 134716221 T C DDX26B 3'UTR 0.40 TCGA-Z6-A8JD-01 X 14863402 14863402 C G FANCB Silent p.L501L 0.22 TCGA-Z6-A8JD-01 X 153420169 153420169 T G OPN1LW Silent p.A233A 0.38 TCGA-Z6-A8JD-01 X 44949070 44949070 A - KDM6A Frame_Shift_Del p.I1211Ffs*10 0.18 TCGA-Z6-A8JD-01 X 70327739 70327739 C G IL2RG Missense_Mutation p.E319D 0.21 tolerated(0.1) possibly_damaging(0.723) TCGA-Z6-A8JD-01 X 77112967 77112974 TGAAAGTT AGAAA MAGT1 In_Frame_Del p.T170_I172delinsFF 0.41 TCGA-Z6-A8JD-01 X 78216383 78216383 T A P2RY10 Nonsense_Mutation p.C122* 0.14 TCGA-Z6-A8JE-01 10 102723612 102723612 G C FAM178A 3'Flank 0.06 TCGA-Z6-A8JE-01 10 105900686 105900686 G C WDR96 Missense_Mutation p.L1449V 0.24 tolerated(0.32) benign(0.014) TCGA-Z6-A8JE-01 10 27349452 27349452 G A ANKRD26 Missense_Mutation p.L494F 0.67 tolerated(0.29) benign(0.002) TCGA-Z6-A8JE-01 10 31809541 31809541 G T ZEB1 Missense_Mutation p.R427S 0.25 deleterious(0) probably_damaging(0.997) TCGA-Z6-A8JE-01 10 69565494 69565494 C G DNAJC12 Missense_Mutation p.D117H 0.05 deleterious(0.01) possibly_damaging(0.592) TCGA-Z6-A8JE-01 10 69948764 69948764 G A MYPN Missense_Mutation p.E936K 0.10 deleterious(0.02) probably_damaging(0.952) TCGA-Z6-A8JE-01 10 75286503 75286503 G C USP54 Missense_Mutation p.P699R 0.25 deleterious(0) possibly_damaging(0.776) TCGA-Z6-A8JE-01 10 909779 909779 C T LARP4B Missense_Mutation p.A112T 0.45 tolerated(0.39) benign(0.002) TCGA-Z6-A8JE-01 10 91353688 91353688 C T PANK1 Missense_Mutation p.E457K 0.32 deleterious(0.01) probably_damaging(0.996) TCGA-Z6-A8JE-01 10 94608265 94608265 C G EXOC6 5'Flank 0.62 TCGA-Z6-A8JE-01 11 102815028 102815028 G A MMP13 Silent p.R461R 0.31 TCGA-Z6-A8JE-01 11 107799511 107799511 G A RAB39A Missense_Mutation p.E73K 0.64 deleterious(0) possibly_damaging(0.851) TCGA-Z6-A8JE-01 11 111430916 111430916 C G LAYN Silent p.V294V 0.12 TCGA-Z6-A8JE-01 11 111941292 111941292 C G PIH1D2 Missense_Mutation p.Q227H 0.67 tolerated(0.18) benign(0.05) TCGA-Z6-A8JE-01 11 14889244 14889244 G A PDE3B Missense_Mutation p.D1027N 0.58 tolerated(0.13) benign(0.052) TCGA-Z6-A8JE-01 11 32697502 32697502 C G CCDC73 Missense_Mutation p.E165D 0.66 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JE-01 11 64418762 64418762 G A NRXN2 Silent p.N961N 0.16 TCGA-Z6-A8JE-01 11 64665158 64665158 G A ATG2A Silent p.V1684V 0.26 TCGA-Z6-A8JE-01 11 65088922 65088922 G A CDC42EP2 Missense_Mutation p.V185M 0.18 deleterious(0.01) possibly_damaging(0.868) TCGA-Z6-A8JE-01 11 68701368 68701368 G A IGHMBP2 Silent p.S508S 0.12 TCGA-Z6-A8JE-01 11 72547797 72547798 - T FCHSD2 3'Flank 0.24 TCGA-Z6-A8JE-01 11 76371217 76371217 A C LRRC32 Missense_Mutation p.S474A 0.21 deleterious(0.01) possibly_damaging(0.883) TCGA-Z6-A8JE-01 11 77727566 77727566 G C KCTD14 3'UTR 0.41 TCGA-Z6-A8JE-01 11 77790692 77790692 G C NDUFC2 Missense_Mutation p.I33M 0.24 tolerated(0.33) benign(0.037) TCGA-Z6-A8JE-01 11 94730891 94730891 G A KDM4D Missense_Mutation p.E119K 0.12 tolerated(0.07) benign(0.02) TCGA-Z6-A8JE-01 12 129569203 129569203 C G TMEM132D Missense_Mutation p.M496I 0.07 tolerated(0.16) benign(0.034) TCGA-Z6-A8JE-01 12 49578864 49578864 C G TUBA1A Missense_Mutation p.E429Q 0.14 deleterious_low_confidence(0.02) benign(0.142) TCGA-Z6-A8JE-01 12 49578975 49578975 C G TUBA1A Missense_Mutation p.D392H 0.20 deleterious_low_confidence(0.01) probably_damaging(0.979) TCGA-Z6-A8JE-01 12 51584241 51584241 G C POU6F1 Missense_Mutation p.S232C 0.12 deleterious(0) possibly_damaging(0.487) TCGA-Z6-A8JE-01 12 56814440 56814440 G A TIMELESS Silent p.L1047L 0.19 TCGA-Z6-A8JE-01 12 58121936 58121936 G A AGAP2-AS1 3'UTR 0.28 TCGA-Z6-A8JE-01 12 66838411 66838411 G A GRIP1 Missense_Mutation p.S495F 0.05 deleterious(0) probably_damaging(0.997) TCGA-Z6-A8JE-01 12 76749571 76749571 G A OSBPL8 3'UTR 0.23 TCGA-Z6-A8JE-01 12 7869817 7869817 A T DPPA3 3'UTR 0.40 TCGA-Z6-A8JE-01 12 90103606 90103606 C G ATP2B1 5'Flank 0.19 TCGA-Z6-A8JE-01 12 94702532 94702532 C T CCDC41 3'UTR 0.49 TCGA-Z6-A8JE-01 12 98938017 98938017 C G TMPO Missense_Mutation p.Q225E 0.32 tolerated(0.53) benign(0.004) TCGA-Z6-A8JE-01 13 108922373 108922373 G C TNFSF13B Missense_Mutation p.D44H 0.26 deleterious(0.05) possibly_damaging(0.541) TCGA-Z6-A8JE-01 13 112722275 112722275 C G SOX1 Missense_Mutation p.I101M 0.74 deleterious(0) probably_damaging(0.996) TCGA-Z6-A8JE-01 13 33316842 33316842 C A PDS5B Missense_Mutation p.D863E 0.25 deleterious(0) possibly_damaging(0.499) TCGA-Z6-A8JE-01 13 44456456 44456456 C T LACC1 Missense_Mutation p.A233V 0.37 deleterious(0) possibly_damaging(0.804) TCGA-Z6-A8JE-01 13 72012894 72012894 G T DACH1 3'UTR 0.27 TCGA-Z6-A8JE-01 13 77454951 77454951 A T KCTD12 3'UTR 0.32 TCGA-Z6-A8JE-01 13 86369470 86369470 G C SLITRK6 Missense_Mutation p.L392V 0.26 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JE-01 13 88331714 88331714 C G SLITRK5 3'UTR 0.32 TCGA-Z6-A8JE-01 13 98660331 98660331 G A IPO5 Missense_Mutation p.D597N 0.75 tolerated(0.11) benign(0.012) TCGA-Z6-A8JE-01 14 106926220 106926220 C A IGHV3-43 Nonsense_Mutation p.E108* 0.21 TCGA-Z6-A8JE-01 14 22476309 22476309 T C TRAV19 Missense_Mutation p.I80T 0.06 tolerated(1) benign(0) TCGA-Z6-A8JE-01 14 23745409 23745409 C G HOMEZ Missense_Mutation p.R343T 0.15 deleterious(0.01) benign(0.437) TCGA-Z6-A8JE-01 14 33291681 33291681 G C AKAP6 Missense_Mutation p.Q1554H 0.16 tolerated_low_confidence(0.06) benign(0.006) TCGA-Z6-A8JE-01 14 39651504 39651504 C G PNN 3'UTR 0.29 TCGA-Z6-A8JE-01 14 42357021 42357021 C G LRFN5 Nonsense_Mutation p.S398* 0.31 TCGA-Z6-A8JE-01 14 58924677 58924677 C G KIAA0586 Missense_Mutation p.I574M 0.21 deleterious(0.03) probably_damaging(0.975) TCGA-Z6-A8JE-01 14 92041204 92041204 G C AL133373.1 5'UTR 0.37 TCGA-Z6-A8JE-01 15 101549252 101549252 G A LRRK1 Missense_Mutation p.E325K 0.69 deleterious(0.02) possibly_damaging(0.891) TCGA-Z6-A8JE-01 15 42138148 42138148 G C PLA2G4B Missense_Mutation p.W732C 0.70 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JE-01 15 48714182 48714182 G T FBN1 Missense_Mutation p.P2513T 0.26 probably_damaging(0.942) TCGA-Z6-A8JE-01 15 78921615 78921615 G T CHRNB4 Missense_Mutation p.F344L 0.52 tolerated(1) benign(0.034) TCGA-Z6-A8JE-01 16 19883970 19883970 G A GPRC5B Silent p.G66G 0.21 TCGA-Z6-A8JE-01 16 28920007 28920007 C T RABEP2 Missense_Mutation p.E390K 0.32 tolerated(1) possibly_damaging(0.474) TCGA-Z6-A8JE-01 16 3041080 3041080 C T LINC00514 RNA 0.61 TCGA-Z6-A8JE-01 16 30455361 30455361 A T SEPHS2 3'Flank 0.08 TCGA-Z6-A8JE-01 16 3105828 3105828 C G MMP25 Intron 0.71 TCGA-Z6-A8JE-01 16 4407996 4407996 T C CORO7 Missense_Mutation p.S856G 0.68 deleterious(0.01) possibly_damaging(0.764) TCGA-Z6-A8JE-01 16 49313380 49313380 G A CBLN1 Missense_Mutation p.R173W 0.22 deleterious(0) probably_damaging(0.988) TCGA-Z6-A8JE-01 16 50818332 50818332 T C CYLD Missense_Mutation p.L640P 0.06 deleterious(0) probably_damaging(0.998) TCGA-Z6-A8JE-01 16 570264 570264 G A RAB11FIP3 Missense_Mutation p.R668H 0.33 tolerated(0.08) benign(0.126) TCGA-Z6-A8JE-01 16 58163023 58163023 G A C16orf80 5'UTR 0.76 TCGA-Z6-A8JE-01 16 70884449 70884449 C T HYDIN Missense_Mutation p.E4185K 0.67 possibly_damaging(0.81) TCGA-Z6-A8JE-01 16 72828297 72828297 C A ZFHX3 Nonsense_Mutation p.G2762* 0.80 TCGA-Z6-A8JE-01 16 74455186 74455186 C G CLEC18B 5'UTR 0.43 TCGA-Z6-A8JE-01 16 84075670 84075670 G T SLC38A8 Missense_Mutation p.F31L 0.80 deleterious(0) probably_damaging(0.955) TCGA-Z6-A8JE-01 17 18965435 18965435 G A SNORD3B-1 RNA 0.36 TCGA-Z6-A8JE-01 17 27002024 27002024 G A SUPT6H Missense_Mutation p.E128K 0.19 deleterious(0.02) unknown(0) TCGA-Z6-A8JE-01 17 36876638 36876638 G C MLLT6 Silent p.L723L 0.55 TCGA-Z6-A8JE-01 17 49296311 49296311 T C MBTD1 Missense_Mutation p.N128S 0.80 tolerated(0.49) benign(0.001) TCGA-Z6-A8JE-01 17 5486100 5486100 G A NLRP1 Missense_Mutation p.S113F 0.40 deleterious(0.03) probably_damaging(0.921) TCGA-Z6-A8JE-01 17 6676639 6676639 C A XAF1 3'UTR 0.28 TCGA-Z6-A8JE-01 17 67039531 67039531 C A ABCA9 Intron 0.44 TCGA-Z6-A8JE-01 17 704261 704261 C G NXN Missense_Mutation p.E412D 0.41 tolerated(0.17) probably_damaging(0.978) TCGA-Z6-A8JE-01 17 73843668 73843669 - A WBP2 Frame_Shift_Ins p.M185Ifs*74 0.33 TCGA-Z6-A8JE-01 17 74303665 74303665 C T QRICH2 5'UTR 0.05 TCGA-Z6-A8JE-01 17 7578271 7578271 T C TP53 Missense_Mutation p.H193R 0.71 deleterious(0) probably_damaging(1) TCGA-Z6-A8JE-01 17 80273253 80273253 C T CD7 Missense_Mutation p.E223K 0.16 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JE-01 17 80790258 80790258 A C ZNF750 Missense_Mutation p.Y25D 0.74 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JE-01 17 8158990 8158990 G C PFAS Missense_Mutation p.E185D 0.53 deleterious(0.03) possibly_damaging(0.71) TCGA-Z6-A8JE-01 17 9549132 9549132 C T USP43 Silent p.F61F 0.40 TCGA-Z6-A8JE-01 18 29868054 29868054 T C GAREM Missense_Mutation p.K169R 0.20 tolerated(0.18) possibly_damaging(0.596) TCGA-Z6-A8JE-01 18 333120 333120 A T COLEC12 Missense_Mutation p.F614I 0.22 deleterious(0) unknown(0) TCGA-Z6-A8JE-01 18 34740346 34740346 T A KIAA1328 Splice_Site p.X472_splice 0.32 TCGA-Z6-A8JE-01 18 5890406 5890406 C A TMEM200C Missense_Mutation p.A553S 0.14 tolerated(0.29) benign(0.019) TCGA-Z6-A8JE-01 19 14001054 14001054 C G C19orf57 Missense_Mutation p.Q205H 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-Z6-A8JE-01 19 16308764 16308764 C G AP1M1 5'UTR 0.21 TCGA-Z6-A8JE-01 19 16653226 16653226 G A CHERP 5'UTR 0.50 TCGA-Z6-A8JE-01 19 19627082 19627082 C T NDUFA13 Missense_Mutation p.P12L 0.41 deleterious(0) probably_damaging(0.999) TCGA-Z6-A8JE-01 19 22817269 22817269 T G ZNF492 5'UTR 0.11 TCGA-Z6-A8JE-01 19 41111456 41111456 G T LTBP4 Silent p.A263A 0.38 TCGA-Z6-A8JE-01 19 42460877 42460877 G A RABAC1 3'UTR 0.53 TCGA-Z6-A8JE-01 19 42814490 42814490 A T PRR19 Silent p.P223P 0.33 TCGA-Z6-A8JE-01 19 43698596 43698596 G C PSG4 Missense_Mutation p.S380C 0.04 tolerated(0.14) probably_damaging(0.976) TCGA-Z6-A8JE-01 19 43699413 43699413 T A PSG4 Missense_Mutation p.K241M 0.22 tolerated(0.1) benign(0) TCGA-Z6-A8JE-01 19 45922395 45922395 C A ERCC1 Missense_Mutation p.K162N 0.40 tolerated(0.12) benign(0.072) TCGA-Z6-A8JE-01 19 55698885 55698885 C A PTPRH Silent p.L854L 0.44 TCGA-Z6-A8JE-01 19 5713256 5713256 G A LONP1 Missense_Mutation p.S176L 0.41 deleterious(0.05) benign(0.013) TCGA-Z6-A8JE-01 19 5903711 5903711 C T NDUFA11 Silent p.P3P 0.46 TCGA-Z6-A8JE-01 1 100950051 100950051 C G CDC14A Intron 0.53 TCGA-Z6-A8JE-01 1 111215886 111215886 G A KCNA3 Nonsense_Mutation p.R516* 0.62 TCGA-Z6-A8JE-01 1 114942183 114942183 C A TRIM33 Missense_Mutation p.V1006L 0.05 deleterious(0) probably_damaging(0.935) TCGA-Z6-A8JE-01 1 115219977 115219977 C T AMPD1 Silent p.R494R 0.21 TCGA-Z6-A8JE-01 1 144994964 144994964 G A PDE4DIP 5'UTR 0.11 TCGA-Z6-A8JE-01 1 152384689 152384689 G C CRNN Missense_Mutation p.N7K 0.28 deleterious(0) possibly_damaging(0.694) TCGA-Z6-A8JE-01 1 16256243 16256243 C T SPEN Nonsense_Mutation p.R1170* 0.32 TCGA-Z6-A8JE-01 1 170952649 170952649 C G MROH9 Missense_Mutation p.Q235E 0.22 tolerated(0.17) benign(0.089) TCGA-Z6-A8JE-01 1 182354682 182354682 G C GLUL Missense_Mutation p.Q205E 0.15 deleterious(0.03) probably_damaging(0.914) TCGA-Z6-A8JE-01 1 196928158 196928158 G A CFHR2 Missense_Mutation p.R254Q 0.31 tolerated(0.38) benign(0.049) TCGA-Z6-A8JE-01 1 201292166 201292166 C T PKP1 Missense_Mutation p.P531L 0.17 deleterious(0.05) probably_damaging(0.987) TCGA-Z6-A8JE-01 1 202561464 202561464 G C PPP1R12B 3'UTR 0.44 TCGA-Z6-A8JE-01 1 220837154 220837154 T C MARK1 3'Flank 0.05 TCGA-Z6-A8JE-01 1 227333345 227333345 C G CDC42BPA Missense_Mutation p.G330R 0.25 deleterious(0) probably_damaging(1) TCGA-Z6-A8JE-01 1 235294938 235294938 C G RBM34 3'UTR 0.24 TCGA-Z6-A8JE-01 1 240421329 240421329 C G FMN2 Missense_Mutation p.H1384D 0.21 possibly_damaging(0.687) TCGA-Z6-A8JE-01 1 243303405 243303405 A C CEP170 Missense_Mutation p.V1355G 0.28 deleterious(0.02) probably_damaging(0.999) TCGA-Z6-A8JE-01 1 245849901 245849901 C T KIF26B Missense_Mutation p.R1206C 0.30 deleterious(0.01) unknown(0) TCGA-Z6-A8JE-01 1 42047900 42047900 C G HIVEP3 Missense_Mutation p.E857Q 0.35 probably_damaging(0.997) TCGA-Z6-A8JE-01 1 67266918 67266918 G C INSL5 5'UTR 0.08 TCGA-Z6-A8JE-01 1 762524 762524 G C LINC00115 RNA 0.15 TCGA-Z6-A8JE-01 1 84833343 84833343 T A UOX RNA 0.28 TCGA-Z6-A8JE-01 1 84833375 84833375 C T UOX RNA 0.33 TCGA-Z6-A8JE-01 1 95293099 95293099 C G SLC44A3 Silent p.V105V 0.19 TCGA-Z6-A8JE-01 20 10388273 10388273 G C MKKS Missense_Mutation p.I421M 0.31 deleterious(0) probably_damaging(0.948) TCGA-Z6-A8JE-01 20 11904297 11904297 C T BTBD3 Missense_Mutation p.L518F 0.16 deleterious(0) possibly_damaging(0.817) TCGA-Z6-A8JE-01 20 23345551 23345551 C G GZF1 Silent p.L177L 0.35 TCGA-Z6-A8JE-01 20 31680384 31680384 A G BPIFB4 Missense_Mutation p.M422V 0.21 tolerated(0.27) benign(0.001) TCGA-Z6-A8JE-01 20 3629141 3629141 G A ATRN 3'UTR 0.39 TCGA-Z6-A8JE-01 20 43977033 43977033 G T SDC4 5'UTR 0.32 TCGA-Z6-A8JE-01 20 49509522 49509522 C T ADNP Missense_Mutation p.E577K 0.29 deleterious(0.01) possibly_damaging(0.76) TCGA-Z6-A8JE-01 20 60639546 60639546 G C TAF4 Missense_Mutation p.Q441E 0.25 possibly_damaging(0.68) TCGA-Z6-A8JE-01 20 60926806 60926806 C T LAMA5 Missense_Mutation p.G304S 0.17 probably_damaging(1) TCGA-Z6-A8JE-01 20 61039868 61039868 C A GATA5 3'UTR 0.53 TCGA-Z6-A8JE-01 20 62697888 62697888 C G TCEA2 Silent p.L44L 0.54 TCGA-Z6-A8JE-01 20 643334 643334 G T SCRT2 3'UTR 0.20 TCGA-Z6-A8JE-01 21 16333779 16333779 T C NRIP1 3'UTR 0.34 TCGA-Z6-A8JE-01 21 34443982 34443982 C T OLIG1 3'UTR 0.29 TCGA-Z6-A8JE-01 21 37705976 37705976 T C MORC3 Silent p.T24T 0.65 TCGA-Z6-A8JE-01 22 23466279 23466279 G T GNAZ 3'UTR 0.17 TCGA-Z6-A8JE-01 22 24479322 24479322 G A CABIN1 Missense_Mutation p.E964K 0.58 deleterious(0.01) probably_damaging(0.991) TCGA-Z6-A8JE-01 22 38313800 38313800 C T MICALL1 Nonsense_Mutation p.Q142* 0.35 TCGA-Z6-A8JE-01 22 42114165 42114165 C G MEI1 Missense_Mutation p.S207C 0.61 deleterious(0) possibly_damaging(0.76) TCGA-Z6-A8JE-01 2 101892823 101892823 C T RNF149 3'UTR 0.45 TCGA-Z6-A8JE-01 2 109067569 109067569 G A GCC2 Splice_Site p.X50_splice 0.45 TCGA-Z6-A8JE-01 2 11332613 11332613 T C ROCK2 Missense_Mutation p.M1305V 0.19 tolerated(0.32) benign(0.002) TCGA-Z6-A8JE-01 2 131976247 131976247 T C POTEE Missense_Mutation p.M91T 0.33 deleterious_low_confidence(0) benign(0.042) TCGA-Z6-A8JE-01 2 132250426 132250426 G T MZT2A 5'Flank 0.34 TCGA-Z6-A8JE-01 2 140990552 140990552 C A LRP1B 3'UTR 0.70 TCGA-Z6-A8JE-01 2 141267497 141267497 C T LRP1B Missense_Mutation p.A2800T 0.80 possibly_damaging(0.499) TCGA-Z6-A8JE-01 2 149243356 149243356 C G MBD5 Missense_Mutation p.T964S 0.61 tolerated_low_confidence(0.9) unknown(0) TCGA-Z6-A8JE-01 2 158156146 158156146 G A GALNT5 Nonsense_Mutation p.W695* 0.04 TCGA-Z6-A8JE-01 2 167262557 167262557 C A SCN7A Missense_Mutation p.D1528Y 0.47 deleterious(0) probably_damaging(0.98) TCGA-Z6-A8JE-01 2 179592389 179592389 G C TTN Missense_Mutation p.S6639C 0.29 TCGA-Z6-A8JE-01 2 190660632 190660632 C T PMS1 Silent p.Y90Y 0.20 TCGA-Z6-A8JE-01 2 202357836 202357836 G C ALS2CR11 Missense_Mutation p.F1076L 0.60 tolerated(0.18) benign(0.048) TCGA-Z6-A8JE-01 2 223163464 223163464 G A PAX3 5'UTR 0.75 TCGA-Z6-A8JE-01 2 234115509 234115509 G A INPP5D 3'UTR 0.62 TCGA-Z6-A8JE-01 2 242795101 242795101 G A PDCD1 Silent p.T36T 0.67 TCGA-Z6-A8JE-01 2 71801357 71801357 C T DYSF Silent p.G1086G 0.70 TCGA-Z6-A8JE-01 2 74725123 74725123 G C LBX2 Silent p.L172L 0.67 TCGA-Z6-A8JE-01 2 84937415 84937415 A C DNAH6 Missense_Mutation p.N3086T 0.33 deleterious(0) possibly_damaging(0.824) TCGA-Z6-A8JE-01 2 96587555 96587555 G C ANKRD36C Missense_Mutation p.S716C 0.15 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-Z6-A8JE-01 2 97356256 97356256 G A FER1L5 RNA 0.20 TCGA-Z6-A8JE-01 2 97526115 97526115 G A SEMA4C 3'UTR 0.48 TCGA-Z6-A8JE-01 2 99634675 99634675 C A TSGA10 Missense_Mutation p.R687L 0.40 tolerated(0.24) possibly_damaging(0.569) TCGA-Z6-A8JE-01 3 10342753 10342753 C G SEC13 3'UTR 0.62 TCGA-Z6-A8JE-01 3 167630684 167630684 G A RP11-298O21.5 RNA 0.21 TCGA-Z6-A8JE-01 3 183400678 183400678 A G KLHL24 3'UTR 0.61 TCGA-Z6-A8JE-01 3 184870595 184870595 G A C3orf70 Missense_Mutation p.S6L 0.22 deleterious_low_confidence(0.02) benign(0.001) TCGA-Z6-A8JE-01 3 192516720 192516720 G C MB21D2 Missense_Mutation p.Q311E 0.32 tolerated(0.19) possibly_damaging(0.569) TCGA-Z6-A8JE-01 3 195006581 195006581 C T ACAP2 Missense_Mutation p.R727H 0.50 deleterious(0) probably_damaging(0.981) TCGA-Z6-A8JE-01 3 195306288 195306288 G A APOD Silent p.F15F 0.33 TCGA-Z6-A8JE-01 3 36873775 36873775 G A TRANK1 Silent p.F2389F 0.24 TCGA-Z6-A8JE-01 3 49866540 49866540 G A TRAIP Missense_Mutation p.S469L 0.59 deleterious_low_confidence(0) benign(0.32) TCGA-Z6-A8JE-01 3 58089741 58089741 C G FLNB Missense_Mutation p.F513L 0.53 tolerated(0.08) benign(0.02) TCGA-Z6-A8JE-01 3 98188847 98188847 C G OR5K1 Missense_Mutation p.Q143E 0.29 deleterious(0) benign(0.282) TCGA-Z6-A8JE-01 3 98518298 98518298 A G DCBLD2 Missense_Mutation p.V749A 0.24 tolerated(0.12) benign(0.164) TCGA-Z6-A8JE-01 4 122593740 122593740 T A ANXA5 Missense_Mutation p.E191D 0.12 deleterious(0) probably_damaging(0.998) TCGA-Z6-A8JE-01 4 123664621 123664621 G A BBS12 Missense_Mutation p.R525H 0.28 deleterious(0.01) probably_damaging(1) TCGA-Z6-A8JE-01 4 1341932 1341932 C A UVSSA Missense_Mutation p.P18H 0.36 tolerated(0.06) probably_damaging(0.95) TCGA-Z6-A8JE-01 4 1389723 1389723 G T CRIPAK 3'UTR 0.41 TCGA-Z6-A8JE-01 4 139100537 139100537 G A SLC7A11 Silent p.F426F 0.40 TCGA-Z6-A8JE-01 4 146095823 146095823 T C OTUD4 Missense_Mutation p.K13R 0.25 tolerated(0.1) benign(0.085) TCGA-Z6-A8JE-01 4 159627784 159627784 C T ETFDH Missense_Mutation p.S491F 0.52 deleterious(0) benign(0.004) TCGA-Z6-A8JE-01 4 166220690 166220690 G A KLHL2 Missense_Mutation p.S272N 0.58 tolerated(1) benign(0.003) TCGA-Z6-A8JE-01 4 1695032 1695032 G C SLBP 3'UTR 0.40 TCGA-Z6-A8JE-01 4 1718680 1718680 G T TMEM129 3'UTR 0.31 TCGA-Z6-A8JE-01 4 176733208 176733208 G A GPM6A Intron 0.24 TCGA-Z6-A8JE-01 4 188924576 188924576 G A ZFP42 Silent p.L205L 0.18 TCGA-Z6-A8JE-01 4 47163327 47163327 G C GABRB1 Missense_Mutation p.G101A 0.19 tolerated(0.33) benign(0.026) TCGA-Z6-A8JE-01 4 47408746 47408746 G A GABRB1 Missense_Mutation p.E295K 0.18 tolerated(0.06) possibly_damaging(0.535) TCGA-Z6-A8JE-01 4 53461245 53461245 C T USP46 3'UTR 0.14 TCGA-Z6-A8JE-01 4 72897591 72897592 AA - NPFFR2 5'UTR 0.31 TCGA-Z6-A8JE-01 4 77996721 77996721 C G CCNI 5'UTR 0.41 TCGA-Z6-A8JE-01 4 786256 786256 C T CPLX1 Missense_Mutation p.E58K 0.26 deleterious(0) probably_damaging(0.995) TCGA-Z6-A8JE-01 4 8226903 8226903 C G SH3TC1 Missense_Mutation p.D415E 0.33 tolerated(0.13) benign(0.222) TCGA-Z6-A8JE-01 4 83849047 83849047 T C LIN54 3'UTR 0.16 TCGA-Z6-A8JE-01 4 86985430 86985430 C T MAPK10 Missense_Mutation p.E367K 0.12 deleterious(0.01) benign(0.39) TCGA-Z6-A8JE-01 4 99801180 99801180 G C EIF4E 3'Flank 0.54 TCGA-Z6-A8JE-01 5 131042140 131042140 T A FNIP1 Missense_Mutation p.Q293L 0.13 deleterious(0.02) probably_damaging(0.992) TCGA-Z6-A8JE-01 5 13864573 13864573 C T DNAH5 Missense_Mutation p.G1510E 0.05 benign(0) TCGA-Z6-A8JE-01 5 140021959 140021959 G T TMCO6 Missense_Mutation p.Q186H 0.75 tolerated(0.13) benign(0.014) TCGA-Z6-A8JE-01 5 141334669 141334669 G C PCDH12 Silent p.L916L 0.71 TCGA-Z6-A8JE-01 5 170319525 170319525 G A RANBP17 Missense_Mutation p.E131K 0.28 tolerated(0.09) benign(0.014) TCGA-Z6-A8JE-01 5 171760943 171760943 G C SH3PXD2B 3'UTR 0.33 TCGA-Z6-A8JE-01 5 179290535 179290535 G A TBC1D9B Silent p.D1222D 0.77 TCGA-Z6-A8JE-01 5 33467748 33467748 G A TARS Missense_Mutation p.E736K 0.13 tolerated(0.14) benign(0.009) TCGA-Z6-A8JE-01 5 35628627 35628627 G A SPEF2 Missense_Mutation p.E42K 0.62 deleterious(0.03) possibly_damaging(0.574) TCGA-Z6-A8JE-01 5 35962969 35962969 C T UGT3A1 Intron 0.31 TCGA-Z6-A8JE-01 5 36876898 36876898 C G NIPBL 5'UTR 0.15 TCGA-Z6-A8JE-01 5 38950435 38950435 G A RICTOR Missense_Mutation p.T1172I 0.07 tolerated(0.19) benign(0.073) TCGA-Z6-A8JE-01 5 49736952 49736952 C T EMB Missense_Mutation p.A12T 0.44 tolerated_low_confidence(0.07) benign(0.039) TCGA-Z6-A8JE-01 5 65350089 65350089 C A ERBB2IP Nonsense_Mutation p.Y981* 0.21 TCGA-Z6-A8JE-01 5 86658398 86658398 G T RASA1 Missense_Mutation p.D455Y 0.19 deleterious(0) possibly_damaging(0.87) TCGA-Z6-A8JE-01 6 107585550 107585550 G C PDSS2 Intron 0.43 TCGA-Z6-A8JE-01 6 114238199 114238199 C T RP11-544L8__B.4 RNA 0.62 TCGA-Z6-A8JE-01 6 116579745 116579745 G C TSPYL4 5'Flank 0.71 TCGA-Z6-A8JE-01 6 13615843 13615843 G C NOL7 Missense_Mutation p.E85Q 0.20 tolerated(0.1) possibly_damaging(0.702) TCGA-Z6-A8JE-01 6 144814581 144814581 C T UTRN Silent p.L1528L 0.20 TCGA-Z6-A8JE-01 6 163987371 163987371 G C QKI Intron 0.33 TCGA-Z6-A8JE-01 6 17556938 17556938 G C CAP2 3'UTR 0.17 TCGA-Z6-A8JE-01 6 24572926 24572926 C T KIAA0319 Missense_Mutation p.G579R 0.37 deleterious(0) probably_damaging(0.983) TCGA-Z6-A8JE-01 6 26104467 26104467 C T HIST1H4C Silent p.L98L 0.11 TCGA-Z6-A8JE-01 6 27841093 27841093 C G HIST1H4L Missense_Mutation p.V66L 0.21 tolerated(0.05) benign(0.046) TCGA-Z6-A8JE-01 6 32812357 32812357 G T PSMB8 5'Flank 0.48 TCGA-Z6-A8JE-01 6 35465741 35465741 C G TULP1 3'UTR 0.45 TCGA-Z6-A8JE-01 6 49518881 49518881 G T C6orf141 Nonsense_Mutation p.E126* 0.28 TCGA-Z6-A8JE-01 6 51824753 51824753 T C PKHD1 Silent p.Q1941Q 0.25 TCGA-Z6-A8JE-01 6 55925539 55925539 C A COL21A1 Missense_Mutation p.A803S 0.20 tolerated(0.47) benign(0.012) TCGA-Z6-A8JE-01 6 80228704 80228704 C T LCA5 5'UTR 0.57 TCGA-Z6-A8JE-01 6 90347493 90347493 C G LYRM2 Missense_Mutation p.E52Q 0.15 deleterious(0.04) possibly_damaging(0.772) TCGA-Z6-A8JE-01 7 100004374 100004374 C A ZCWPW1 Missense_Mutation p.W371C 0.71 deleterious(0) probably_damaging(1) TCGA-Z6-A8JE-01 7 104730616 104730616 C A KMT2E Missense_Mutation p.Q507K 0.07 deleterious(0.02) benign(0.042) TCGA-Z6-A8JE-01 7 128615974 128615974 G A TNPO3 Missense_Mutation p.H693Y 0.71 tolerated(0.06) benign(0.007) TCGA-Z6-A8JE-01 7 143748358 143748358 G C OR2A5 Missense_Mutation p.L288F 0.65 deleterious(0.02) benign(0.295) TCGA-Z6-A8JE-01 7 36373465 36373465 C A KIAA0895 Missense_Mutation p.G436W 0.74 deleterious(0) probably_damaging(1) TCGA-Z6-A8JE-01 7 50471458 50471458 G C IKZF1 3'Flank 0.42 TCGA-Z6-A8JE-01 7 86569422 86569422 T A KIAA1324L Nonsense_Mutation p.K251* 0.64 TCGA-Z6-A8JE-01 8 101715436 101715436 A C PABPC1 3'UTR 0.17 TCGA-Z6-A8JE-01 8 10464952 10464952 T C RP1L1 Missense_Mutation p.E2219G 0.15 unknown(0) TCGA-Z6-A8JE-01 8 10464968 10464968 C T RP1L1 Missense_Mutation p.A2214T 0.18 unknown(0) TCGA-Z6-A8JE-01 8 10464975 10464975 A G RP1L1 Silent p.G2211G 0.15 TCGA-Z6-A8JE-01 8 12881831 12881831 C T KIAA1456 3'UTR 0.10 TCGA-Z6-A8JE-01 8 133141661 133141661 C A KCNQ3 Missense_Mutation p.G823W 0.33 tolerated(0.05) probably_damaging(0.999) TCGA-Z6-A8JE-01 8 133899614 133899614 G C TG Missense_Mutation p.R666T 0.30 deleterious(0) probably_damaging(1) TCGA-Z6-A8JE-01 8 134030045 134030045 G C TG Missense_Mutation p.E2195D 0.37 tolerated(0.54) benign(0.008) TCGA-Z6-A8JE-01 8 136594204 136594204 G A KHDRBS3 Missense_Mutation p.R232Q 0.49 tolerated(0.26) probably_damaging(0.997) TCGA-Z6-A8JE-01 8 141521552 141521552 C T CHRAC1 5'UTR 0.37 TCGA-Z6-A8JE-01 8 141567319 141567319 C T AGO2 Missense_Mutation p.E299K 0.29 tolerated(0.09) possibly_damaging(0.561) TCGA-Z6-A8JE-01 8 144462882 144462882 C G RHPN1 Nonsense_Mutation p.S447* 0.21 TCGA-Z6-A8JE-01 8 145831062 145831062 C T ARHGAP39 5'UTR 0.34 TCGA-Z6-A8JE-01 8 38831859 38831859 T C HTRA4 Missense_Mutation p.V26A 0.48 tolerated(0.55) benign(0.011) TCGA-Z6-A8JE-01 8 41566347 41566347 C T ANK1 Silent p.E682E 0.27 TCGA-Z6-A8JE-01 8 75761594 75761594 C G PI15 3'UTR 0.24 TCGA-Z6-A8JE-01 9 107367331 107367331 G C OR13C2 Nonsense_Mutation p.S193* 0.29 TCGA-Z6-A8JE-01 9 116298982 116298982 A G RGS3 Intron 0.24 TCGA-Z6-A8JE-01 9 139244051 139244051 G A GPSM1 Missense_Mutation p.D431N 0.42 tolerated(0.23) benign(0.021) TCGA-Z6-A8JE-01 9 139904091 139904091 C A ABCA2 Missense_Mutation p.E2212D 0.53 deleterious(0) benign(0.358) TCGA-Z6-A8JE-01 9 72929739 72929739 T G SMC5 Missense_Mutation p.L554V 0.31 deleterious(0.04) benign(0.074) TCGA-Z6-A8JE-01 9 84531499 84531499 G C SPATA31D5P RNA 0.14 TCGA-Z6-A8JE-01 X 107408226 107408226 G C COL4A6 Missense_Mutation p.S1285C 0.71 probably_damaging(0.95) TCGA-Z6-A8JE-01 X 107939618 107939618 G A COL4A5 3'UTR 0.45 TCGA-Z6-A8JE-01 X 114058075 114058075 G T HTR2C Intron 0.20 TCGA-Z6-A8JE-01 X 140996200 140996200 C T MAGEC1 Silent p.L1004L 0.80 TCGA-Z6-A8JE-01 X 150840072 150840072 G A PASD1 Missense_Mutation p.V420I 0.22 tolerated(0.49) benign(0.347) TCGA-Z6-A8JE-01 X 16887221 16887221 G A RBBP7 Nonsense_Mutation p.Q91* 0.76 TCGA-Z6-A8JE-01 X 30236789 30236789 C G MAGEB2 Missense_Mutation p.T31S 0.50 tolerated(0.07) possibly_damaging(0.82) TCGA-Z6-A8JE-01 X 307471 307471 C T PPP2R3B Missense_Mutation p.E253K 0.45 deleterious(0.01) possibly_damaging(0.52) TCGA-Z6-A8JE-01 X 44007976 44007976 C G EFHC2 3'UTR 0.62 TCGA-Z6-A8JE-01 X 79699842 79699842 G T FAM46D 3'UTR 0.33 TCGA-Z6-A9VB-01 10 119044395 119044395 C A PDZD8 Nonsense_Mutation p.E617* 0.32 TCGA-Z6-A9VB-01 10 25464572 25464572 G T GPR158 Missense_Mutation p.A75S 0.27 tolerated(0.36) benign(0.01) TCGA-Z6-A9VB-01 10 25464990 25464990 C T GPR158 Missense_Mutation p.A214V 0.05 tolerated(0.28) benign(0.209) TCGA-Z6-A9VB-01 10 33103339 33103339 A G C10ORF68 Missense_Mutation p.I318V 0.49 tolerated(0.44) possibly_damaging(0.658) TCGA-Z6-A9VB-01 10 5043707 5043707 T - AKR1C2 Frame_Shift_Del p.K84Sfs*20 0.15 TCGA-Z6-A9VB-01 10 61832417 61832417 T - ANK3 Frame_Shift_Del p.D2741Vfs*31 0.26 TCGA-Z6-A9VB-01 10 74813333 74813333 G T P4HA1 Missense_Mutation p.S160Y 0.26 tolerated(0.05) possibly_damaging(0.555) TCGA-Z6-A9VB-01 11 1093688 1093688 C T MUC2 Missense_Mutation p.P1836L 0.51 unknown(0) TCGA-Z6-A9VB-01 11 19173823 19173823 A C ZDHHC13 Missense_Mutation p.K235Q 0.33 deleterious(0.01) benign(0.215) TCGA-Z6-A9VB-01 11 46342074 46342074 C A CREB3L1 Missense_Mutation p.H506Q 0.40 tolerated_low_confidence(0.17) benign(0.005) TCGA-Z6-A9VB-01 11 5289646 5289646 G T HBE1 3'UTR 0.32 TCGA-Z6-A9VB-01 11 56230099 56230099 C A OR5M9 Missense_Mutation p.R260I 0.24 deleterious(0) benign(0.392) TCGA-Z6-A9VB-01 11 63448929 63448929 C T RTN3 5'Flank 0.32 TCGA-Z6-A9VB-01 12 11461454 11461454 G T PRB4 Missense_Mutation p.P155T 0.27 tolerated_low_confidence(0.1) unknown(0) TCGA-Z6-A9VB-01 12 130926544 130926544 G A RIMBP2 Silent p.A434A 0.60 TCGA-Z6-A9VB-01 12 14923992 14923992 C T HIST4H4 Silent p.K9K 0.08 TCGA-Z6-A9VB-01 12 47630264 47630264 G A PCED1B 3'UTR 0.30 TCGA-Z6-A9VB-01 12 52800029 52800029 C T KRT82 Silent p.R11R 0.48 TCGA-Z6-A9VB-01 12 8376138 8376138 C T FAM90A1 Silent p.Q113Q 0.47 TCGA-Z6-A9VB-01 12 95478413 95478413 C T FGD6 Missense_Mutation p.A1373T 0.28 deleterious(0) probably_damaging(0.999) TCGA-Z6-A9VB-01 12 96641019 96641019 C T ELK3 Missense_Mutation p.P170L 0.65 tolerated(0.61) benign(0) TCGA-Z6-A9VB-01 13 111935538 111935538 C T ARHGEF7 Missense_Mutation p.A614V 0.34 tolerated(0.54) benign(0) TCGA-Z6-A9VB-01 13 27333515 27333515 C T GPR12 Silent p.S150S 0.58 TCGA-Z6-A9VB-01 13 28536299 28536299 T C CDX2 3'UTR 0.24 TCGA-Z6-A9VB-01 14 105717165 105717165 C T BTBD6 3'UTR 0.08 TCGA-Z6-A9VB-01 14 24728952 24728952 G A TGM1 Silent p.G314G 0.20 TCGA-Z6-A9VB-01 14 56765514 56765514 A G PELI2 3'UTR 0.50 TCGA-Z6-A9VB-01 14 79175585 79175585 G A NRXN3 Missense_Mutation p.R43H 0.12 deleterious(0.01) probably_damaging(0.921) TCGA-Z6-A9VB-01 14 92470599 92470599 G T TRIP11 Missense_Mutation p.Q1241K 0.24 deleterious(0.04) possibly_damaging(0.798) TCGA-Z6-A9VB-01 15 23813044 23813044 T G MKRN3 3'UTR 0.32 TCGA-Z6-A9VB-01 15 23813065 23813065 A G MKRN3 3'UTR 0.31 TCGA-Z6-A9VB-01 15 79749998 79749998 C T KIAA1024 Silent p.T503T 0.30 TCGA-Z6-A9VB-01 16 1576045 1576045 G T IFT140 Missense_Mutation p.R871S 0.37 deleterious(0) probably_damaging(0.997) TCGA-Z6-A9VB-01 16 21045322 21045322 G A DNAH3 Missense_Mutation p.A1724V 0.20 deleterious(0) possibly_damaging(0.468) TCGA-Z6-A9VB-01 16 46534066 46534066 A G ANKRD26P1 RNA 0.22 TCGA-Z6-A9VB-01 16 51174226 51174226 G A SALL1 Missense_Mutation p.T636M 0.19 tolerated(0.06) benign(0.003) TCGA-Z6-A9VB-01 16 68010044 68010044 T A DPEP3 Missense_Mutation p.Q419H 0.13 deleterious(0.02) probably_damaging(0.929) TCGA-Z6-A9VB-01 16 79630648 79630648 T - MAF Intron 0.27 TCGA-Z6-A9VB-01 17 26685980 26685980 A G TMEM199 Missense_Mutation p.I85V 0.48 tolerated(0.13) possibly_damaging(0.454) TCGA-Z6-A9VB-01 17 38856630 38856630 C A KRT24 Missense_Mutation p.M287I 0.29 deleterious(0.01) benign(0.114) TCGA-Z6-A9VB-01 17 44061259 44061259 G A MAPT Silent p.P363P 0.21 TCGA-Z6-A9VB-01 17 74625793 74625793 C T ST6GALNAC1 Silent p.R44R 0.38 TCGA-Z6-A9VB-01 17 7579361 7579361 A G TP53 Missense_Mutation p.F109S 0.65 deleterious(0) probably_damaging(1) TCGA-Z6-A9VB-01 17 79205329 79205329 G A ENTHD2 Intron 0.24 TCGA-Z6-A9VB-01 17 79813462 79813462 G C P4HB Missense_Mutation p.A118G 0.16 tolerated(1) benign(0.001) TCGA-Z6-A9VB-01 17 80038423 80038423 G A FASN Silent p.I2290I 0.12 TCGA-Z6-A9VB-01 17 8158846 8158846 G T PFAS Silent p.V137V 0.35 TCGA-Z6-A9VB-01 18 19450104 19450104 C A MIB1 3'UTR 0.18 TCGA-Z6-A9VB-01 19 19338453 19338453 C T NCAN Missense_Mutation p.T675I 0.35 tolerated(0.25) benign(0.003) TCGA-Z6-A9VB-01 19 31767227 31767227 C T TSHZ3 3'UTR 0.09 TCGA-Z6-A9VB-01 19 40704445 40704445 A T MAP3K10 Missense_Mutation p.K282N 0.33 deleterious(0) probably_damaging(0.999) TCGA-Z6-A9VB-01 19 45656300 45656300 G A NKPD1 Silent p.Y465Y 0.29 TCGA-Z6-A9VB-01 19 47207558 47207558 G A PRKD2 Silent p.L253L 0.29 TCGA-Z6-A9VB-01 19 50783349 50783349 G A MYH14 Missense_Mutation p.R1363H 0.09 deleterious(0.02) probably_damaging(0.91) TCGA-Z6-A9VB-01 19 51961657 51961657 C T SIGLEC8 5'UTR 0.29 TCGA-Z6-A9VB-01 19 52090212 52090212 G C ZNF175 Missense_Mutation p.E210Q 0.18 tolerated(0.37) benign(0.231) TCGA-Z6-A9VB-01 19 52272212 52272212 A G FPR2 Missense_Mutation p.I101V 0.27 tolerated(0.61) benign(0.006) TCGA-Z6-A9VB-01 19 52272818 52272818 G A FPR2 Missense_Mutation p.V303I 0.63 deleterious(0) possibly_damaging(0.899) TCGA-Z6-A9VB-01 19 56090030 56090030 G A ZNF579 Silent p.L326L 0.23 TCGA-Z6-A9VB-01 19 994323 994323 A G WDR18 Missense_Mutation p.I427V 0.33 tolerated(0.08) possibly_damaging(0.454) TCGA-Z6-A9VB-01 1 12164486 12164486 G T TNFRSF8 Nonsense_Mutation p.E107* 0.27 TCGA-Z6-A9VB-01 1 12336369 12336369 T A VPS13D Silent p.T908T 0.24 TCGA-Z6-A9VB-01 1 154296217 154296217 C T AQP10 Silent p.N214N 0.28 TCGA-Z6-A9VB-01 1 158517456 158517456 C A OR6Y1 Missense_Mutation p.G147V 0.42 tolerated(0.86) benign(0.098) TCGA-Z6-A9VB-01 1 158637726 158637727 - A SPTA1 Frame_Shift_Ins p.A654Cfs*3 0.22 TCGA-Z6-A9VB-01 1 164529123 164529123 C A PBX1 Missense_Mutation p.L22M 0.12 tolerated_low_confidence(0.5) benign(0.018) TCGA-Z6-A9VB-01 1 175086207 175086207 G C TNN Missense_Mutation p.R751T 0.06 tolerated(0.06) benign(0.013) TCGA-Z6-A9VB-01 1 197396689 197396689 C T CRB1 Missense_Mutation p.T745M 0.28 deleterious(0.04) probably_damaging(1) TCGA-Z6-A9VB-01 1 201792024 201792024 T C NAV1 3'UTR 0.07 TCGA-Z6-A9VB-01 1 210857068 210857068 T A KCNH1 Missense_Mutation p.D842V 0.44 tolerated_low_confidence(0.09) benign(0.006) TCGA-Z6-A9VB-01 1 224492794 224492794 C A NVL Missense_Mutation p.R230S 0.48 tolerated(0.07) benign(0.037) TCGA-Z6-A9VB-01 1 241665791 241665791 G A FH Silent p.V396V 0.10 TCGA-Z6-A9VB-01 1 40702244 40702244 T A RLF Missense_Mutation p.S624T 0.52 tolerated(0.57) benign(0.004) TCGA-Z6-A9VB-01 1 77094625 77094625 G C ST6GALNAC3 3'UTR 0.44 TCGA-Z6-A9VB-01 1 93652031 93652031 C A CCDC18 Missense_Mutation p.H199N 0.50 tolerated(1) benign(0.02) TCGA-Z6-A9VB-01 20 23731294 23731294 T C CST1 Silent p.V70V 0.79 TCGA-Z6-A9VB-01 20 57599831 57599831 G A TUBB1 Missense_Mutation p.G450E 0.21 tolerated_low_confidence(0.32) benign(0) TCGA-Z6-A9VB-01 21 42629162 42629162 G A BACE2 Silent p.A404A 0.48 TCGA-Z6-A9VB-01 2 116601514 116601514 C A DPP10 3'Flank 0.07 TCGA-Z6-A9VB-01 2 125204397 125204397 G T CNTNAP5 Missense_Mutation p.Q267H 0.54 tolerated(0.12) probably_damaging(0.998) TCGA-Z6-A9VB-01 2 125204398 125204398 C T CNTNAP5 Missense_Mutation p.H268Y 0.54 deleterious(0.01) possibly_damaging(0.703) TCGA-Z6-A9VB-01 2 152432749 152432749 C T NEB Silent p.T5608T 0.58 TCGA-Z6-A9VB-01 2 163027347 163027347 T - FAP 3'UTR 0.68 TCGA-Z6-A9VB-01 2 179611959 179611959 C A TTN Intron 0.72 TCGA-Z6-A9VB-01 2 197189751 197189751 G A HECW2 Missense_Mutation p.R232W 0.21 deleterious(0) probably_damaging(1) TCGA-Z6-A9VB-01 2 201718664 201718664 C A CLK1 Missense_Mutation p.A467S 0.26 tolerated(0.37) benign(0.121) TCGA-Z6-A9VB-01 2 226447741 226447741 G T NYAP2 Missense_Mutation p.E536D 0.29 tolerated(0.09) benign(0.017) TCGA-Z6-A9VB-01 2 64120194 64120194 A C VPS54 3'UTR 0.41 TCGA-Z6-A9VB-01 2 64819492 64819492 A G AFTPH 3'UTR 0.39 TCGA-Z6-A9VB-01 3 100534892 100534892 C T ABI3BP Intron 0.24 TCGA-Z6-A9VB-01 3 124114025 124114025 A G KALRN Missense_Mutation p.D667G 0.43 tolerated(0.17) unknown(0) TCGA-Z6-A9VB-01 3 124692645 124692645 C T HEG1 Missense_Mutation p.R1309Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-Z6-A9VB-01 3 143412093 143412093 C A SLC9A9 Missense_Mutation p.G197V 0.19 tolerated(0.11) benign(0.178) TCGA-Z6-A9VB-01 3 167371112 167371112 G A WDR49 5'UTR 0.09 TCGA-Z6-A9VB-01 3 180397475 180397475 G C CCDC39 5'Flank 0.12 TCGA-Z6-A9VB-01 3 192516915 192516915 C A MB21D2 Missense_Mutation p.A246S 0.17 tolerated(0.11) possibly_damaging(0.596) TCGA-Z6-A9VB-01 3 195474152 195474152 G A MUC4 Silent p.G5378G 0.17 TCGA-Z6-A9VB-01 3 30715615 30715615 A G TGFBR2 Missense_Mutation p.M450V 0.39 deleterious(0) probably_damaging(1) TCGA-Z6-A9VB-01 3 31666481 31666481 A G STT3B Silent p.V601V 0.50 TCGA-Z6-A9VB-01 4 187455431 187455431 C T MTNR1A Silent p.T155T 0.24 TCGA-Z6-A9VB-01 4 20568920 20568920 C T SLIT2 Missense_Mutation p.P921S 0.50 deleterious(0) probably_damaging(0.998) TCGA-Z6-A9VB-01 4 39918704 39918704 T G PDS5A Missense_Mutation p.L280F 0.34 deleterious(0) probably_damaging(1) TCGA-Z6-A9VB-01 4 52781181 52781181 C T DCUN1D4 3'UTR 0.22 TCGA-Z6-A9VB-01 4 69403558 69403558 G A UGT2B17 Nonsense_Mutation p.R460* 0.70 TCGA-Z6-A9VB-01 4 73188757 73188757 G A ADAMTS3 Missense_Mutation p.R307C 0.20 deleterious(0) probably_damaging(0.997) TCGA-Z6-A9VB-01 5 14406743 14406743 G A TRIO Missense_Mutation p.A1641T 0.42 possibly_damaging(0.692) TCGA-Z6-A9VB-01 5 177022337 177022337 C A TMED9 Missense_Mutation p.Q210K 0.70 deleterious(0) probably_damaging(0.999) TCGA-Z6-A9VB-01 5 180582374 180582374 G C OR2V2 Missense_Mutation p.Q144H 0.15 tolerated(0.13) possibly_damaging(0.89) TCGA-Z6-A9VB-01 5 70751670 70751670 C T BDP1 5'UTR 0.48 TCGA-Z6-A9VB-01 5 795724 795724 C G ZDHHC11 3'UTR 0.17 TCGA-Z6-A9VB-01 5 88027605 88027605 G T MEF2C Missense_Mutation p.R269S 0.50 deleterious(0) possibly_damaging(0.864) TCGA-Z6-A9VB-01 6 117245835 117245835 C G RFX6 Missense_Mutation p.S520C 0.27 deleterious(0) probably_damaging(0.99) TCGA-Z6-A9VB-01 6 153365166 153365166 A C RGS17 5'UTR 0.20 TCGA-Z6-A9VB-01 6 29012060 29012060 T A OR2W1 Missense_Mutation p.K298M 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-Z6-A9VB-01 6 96661003 96661003 G A FUT9 3'UTR 0.21 TCGA-Z6-A9VB-01 7 1024091 1024091 G A CYP2W1 Missense_Mutation p.R73H 0.28 tolerated(0.55) benign(0.009) TCGA-Z6-A9VB-01 7 126173579 126173579 G A GRM8 Silent p.R619R 0.31 TCGA-Z6-A9VB-01 7 131175337 131175337 A G MKLN1 3'UTR 0.25 TCGA-Z6-A9VB-01 7 141820169 141820169 G T RP11-1220K2.2 Missense_Mutation p.Q58H 0.16 tolerated(0.09) benign(0.001) TCGA-Z6-A9VB-01 7 142962173 142962173 C T GSTK1 Silent p.R124R 0.26 TCGA-Z6-A9VB-01 7 149170918 149170918 G A ZNF746 3'UTR 0.40 TCGA-Z6-A9VB-01 7 21945956 21945956 G - CDCA7L Frame_Shift_Del p.A291Vfs*43 0.22 TCGA-Z6-A9VB-01 7 47314791 47314791 G T TNS3 3'UTR 0.17 TCGA-Z6-A9VB-01 7 6035230 6035230 C G PMS2 Missense_Mutation p.V280L 0.50 tolerated(0.19) benign(0.003) TCGA-Z6-A9VB-01 7 87476367 87476367 G A SLC25A40 Silent p.Y176Y 0.25 TCGA-Z6-A9VB-01 8 101152954 101152954 G A FBXO43 Missense_Mutation p.L510F 0.06 deleterious(0) probably_damaging(0.989) TCGA-Z6-A9VB-01 8 113267520 113267520 T A CSMD3 Silent p.A3333A 0.36 TCGA-Z6-A9VB-01 8 139825204 139825204 C A COL22A1 Missense_Mutation p.C435F 0.12 unknown(0) TCGA-Z6-A9VB-01 8 143853579 143853579 A C LYNX1 Intron 0.17 TCGA-Z6-A9VB-01 8 24212043 24212043 C A ADAM28 3'UTR 0.52 TCGA-Z6-A9VB-01 8 39079206 39079206 C T ADAM32 Silent p.C437C 0.34 TCGA-Z6-A9VB-01 8 56436772 56436772 G A XKR4 Missense_Mutation p.E647K 0.39 deleterious(0) probably_damaging(0.981) TCGA-Z6-A9VB-01 8 67341994 67341994 A G RRS1 Missense_Mutation p.T210A 0.62 tolerated(0.13) benign(0.353) TCGA-Z6-A9VB-01 8 94821160 94821160 C T TMEM67 Silent p.D844D 0.43 TCGA-Z6-A9VB-01 9 100845271 100845271 T A NANS Silent p.T338T 0.26 TCGA-Z6-A9VB-01 9 101706528 101706528 G T COL15A1 Silent p.A32A 0.33 TCGA-Z6-A9VB-01 9 104161215 104161215 A T ZNF189 5'Flank 0.36 TCGA-Z6-A9VB-01 9 121930252 121930252 C T BRINP1 Missense_Mutation p.V466M 0.14 deleterious(0) probably_damaging(0.971) TCGA-Z6-A9VB-01 9 33462777 33462777 C T NOL6 Missense_Mutation p.R1109Q 0.11 tolerated(0.65) benign(0.001) TCGA-Z6-A9VB-01 9 34241681 34241681 C T UBAP1 Missense_Mutation p.R284W 0.08 deleterious(0) possibly_damaging(0.857) TCGA-Z6-A9VB-01 9 34834839 34834839 G A FAM205B RNA 0.14 TCGA-Z6-A9VB-01 X 105279119 105279119 G A SERPINA7 Missense_Mutation p.R294C 0.69 deleterious(0.01) possibly_damaging(0.856) TCGA-Z6-A9VB-01 X 134993792 134993792 C A SAGE1 Missense_Mutation p.P734H 0.71 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 10 102283650 102283650 C G NDUFB8 Missense_Mutation p.E169Q 0.21 deleterious(0) probably_damaging(0.923) TCGA-Z6-AAPN-01 10 102703859 102703859 G C FAM178A Missense_Mutation p.E911Q 0.12 deleterious(0) probably_damaging(0.936) TCGA-Z6-AAPN-01 10 102738242 102738242 G C MRPL43 3'Flank 0.19 TCGA-Z6-AAPN-01 10 11503122 11503122 G T USP6NL 3'UTR 0.19 TCGA-Z6-AAPN-01 10 117825136 117825136 G A GFRA1 Missense_Mutation p.A400V 0.16 tolerated(0.36) benign(0.016) TCGA-Z6-AAPN-01 10 118383542 118383542 C T PNLIPRP2 Missense_Mutation p.P46S 0.12 deleterious(0.01) possibly_damaging(0.705) TCGA-Z6-AAPN-01 10 119308905 119308905 A G EMX2 3'UTR 0.21 TCGA-Z6-AAPN-01 10 124697221 124697221 C G C10orf88 Missense_Mutation p.G368A 0.16 tolerated(0.43) benign(0.002) TCGA-Z6-AAPN-01 10 135209721 135209721 C G RP11-108K14.8 Missense_Mutation p.H83D 0.17 deleterious(0) probably_damaging(0.98) TCGA-Z6-AAPN-01 10 63852198 63852198 G C ARID5B Missense_Mutation p.M992I 0.17 tolerated(0.1) benign(0.296) TCGA-Z6-AAPN-01 10 69866502 69866502 G C MYPN 5'Flank 0.31 TCGA-Z6-AAPN-01 10 70734442 70734442 G C DDX21 Missense_Mutation p.R562P 0.09 deleterious(0) possibly_damaging(0.887) TCGA-Z6-AAPN-01 10 71562471 71562471 G A COL13A1 Missense_Mutation p.E98K 0.13 deleterious_low_confidence(0.01) benign(0.122) TCGA-Z6-AAPN-01 10 79569442 79569442 A T DLG5 Missense_Mutation p.F1504I 0.34 tolerated(0.39) benign(0.195) TCGA-Z6-AAPN-01 10 81154181 81154181 C G ZCCHC24 Missense_Mutation p.E155Q 0.16 deleterious(0.01) probably_damaging(0.97) TCGA-Z6-AAPN-01 10 93768818 93768818 C G BTAF1 Nonsense_Mutation p.S1319* 0.11 TCGA-Z6-AAPN-01 10 94408026 94408026 C T KIF11 Missense_Mutation p.R869C 0.08 tolerated(0.09) benign(0.001) TCGA-Z6-AAPN-01 10 96748714 96748714 G C CYP2C9 Missense_Mutation p.D468H 0.09 deleterious(0) probably_damaging(0.963) TCGA-Z6-AAPN-01 10 99361729 99361729 C T HOGA1 Silent p.L272L 0.37 TCGA-Z6-AAPN-01 11 101341989 101341989 C T TRPC6 Silent p.L778L 0.16 TCGA-Z6-AAPN-01 11 102707181 102707181 G C MMP3 Intron 0.39 TCGA-Z6-AAPN-01 11 103041718 103041718 C T DYNC2H1 Missense_Mutation p.S1752L 0.36 probably_damaging(1) TCGA-Z6-AAPN-01 11 10328411 10328411 C T ADM 3'UTR 0.21 TCGA-Z6-AAPN-01 11 108186589 108186589 G C ATM Missense_Mutation p.D2016H 0.31 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 11 11374595 11374595 C G CSNK2A3 Missense_Mutation p.W24C 0.13 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 11 122852178 122852178 G C BSX Missense_Mutation p.H68D 0.17 deleterious(0.02) benign(0.302) TCGA-Z6-AAPN-01 11 124006970 124006970 C G VWA5A Missense_Mutation p.I498M 0.12 deleterious(0.04) probably_damaging(0.942) TCGA-Z6-AAPN-01 11 125325912 125325912 T C FEZ1 Missense_Mutation p.Q253R 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-Z6-AAPN-01 11 125365498 125365498 G C AP000708.1 Missense_Mutation p.E92Q 0.24 tolerated_low_confidence(0.15) possibly_damaging(0.742) TCGA-Z6-AAPN-01 11 129794884 129794884 C G PRDM10 Missense_Mutation p.E595Q 0.23 tolerated(0.1) benign(0.355) TCGA-Z6-AAPN-01 11 134252719 134252719 C T B3GAT1 Missense_Mutation p.R268Q 0.18 tolerated(0.26) benign(0.215) TCGA-Z6-AAPN-01 11 14277295 14277295 C T SPON1 RNA 0.34 TCGA-Z6-AAPN-01 11 22747876 22747876 A C GAS2 Silent p.A102A 0.13 TCGA-Z6-AAPN-01 11 22747881 22747881 C G GAS2 Missense_Mutation p.S104W 0.12 deleterious(0) probably_damaging(0.991) TCGA-Z6-AAPN-01 11 33667496 33667496 C T KIAA1549L Missense_Mutation p.P1595S 0.30 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 11 33667497 33667497 C T KIAA1549L Missense_Mutation p.P1595L 0.30 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 11 45833064 45833064 G C SLC35C1 3'UTR 0.16 TCGA-Z6-AAPN-01 11 48346987 48346987 C G OR4C3 Silent p.L165L 0.11 TCGA-Z6-AAPN-01 11 4870196 4870196 C G OR51S1 Missense_Mutation p.L81F 0.08 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 11 55703532 55703532 G A OR5I1 Silent p.F115F 0.29 TCGA-Z6-AAPN-01 11 56085848 56085848 G C OR8K3 Missense_Mutation p.E22D 0.30 tolerated_low_confidence(0.06) benign(0.093) TCGA-Z6-AAPN-01 11 56954739 56954739 C T LRRC55 Missense_Mutation p.R271W 0.16 tolerated(0.21) benign(0.019) TCGA-Z6-AAPN-01 11 57472496 57472496 G C MED19 Missense_Mutation p.F141L 0.24 tolerated(0.81) benign(0.017) TCGA-Z6-AAPN-01 11 57509011 57509011 G C C11orf31 5'Flank 0.35 TCGA-Z6-AAPN-01 11 6007166 6007166 T G OR52L1 3'UTR 0.14 TCGA-Z6-AAPN-01 11 61674023 61674023 C T RAB3IL1 Missense_Mutation p.R191H 0.25 tolerated(0.07) probably_damaging(0.996) TCGA-Z6-AAPN-01 11 62297376 62297376 C G AHNAK Missense_Mutation p.D1505H 0.11 probably_damaging(1) TCGA-Z6-AAPN-01 11 62298039 62298039 C A AHNAK Missense_Mutation p.D1284Y 0.16 possibly_damaging(0.665) TCGA-Z6-AAPN-01 11 62298750 62298750 C G AHNAK Missense_Mutation p.E1047Q 0.12 probably_damaging(0.939) TCGA-Z6-AAPN-01 11 62343608 62343608 G C TUT1 Missense_Mutation p.S566C 0.08 deleterious(0.01) possibly_damaging(0.769) TCGA-Z6-AAPN-01 11 64662007 64662007 G C ATG2A 3'Flank 0.13 TCGA-Z6-AAPN-01 11 64707168 64707168 C G C11orf85 Missense_Mutation p.R206S 0.27 deleterious_low_confidence(0.01) benign(0.402) TCGA-Z6-AAPN-01 11 65144518 65144518 G A SLC25A45 Silent p.I123I 0.26 TCGA-Z6-AAPN-01 11 66045989 66045991 TCT - CNIH2 In_Frame_Del p.F23del 0.15 TCGA-Z6-AAPN-01 11 66555679 66555679 C G C11orf80 Nonsense_Mutation p.S191* 0.17 TCGA-Z6-AAPN-01 11 70229214 70229214 G C PPFIA1 3'UTR 0.17 TCGA-Z6-AAPN-01 11 71238747 71238747 C G KRTAP5-7 Nonsense_Mutation p.S134* 0.18 TCGA-Z6-AAPN-01 11 71548582 71548582 G C DEFB108B Missense_Mutation p.E66Q 0.23 tolerated(0.07) benign(0.042) TCGA-Z6-AAPN-01 11 73076558 73076558 G C ARHGEF17 Missense_Mutation p.E1892Q 0.53 tolerated(0.09) possibly_damaging(0.586) TCGA-Z6-AAPN-01 11 73745207 73745207 G C C2CD3 3'Flank 0.25 TCGA-Z6-AAPN-01 11 75511769 75511769 C G DGAT2 3'UTR 0.11 TCGA-Z6-AAPN-01 11 75511780 75511780 C G DGAT2 3'UTR 0.14 TCGA-Z6-AAPN-01 11 76370959 76370959 C T LRRC32 Missense_Mutation p.E560K 0.18 deleterious(0) possibly_damaging(0.733) TCGA-Z6-AAPN-01 11 8122402 8122402 G C TUB Missense_Mutation p.Q470H 0.15 deleterious(0.03) benign(0.006) TCGA-Z6-AAPN-01 11 89135696 89135696 T A NOX4 Missense_Mutation p.Y215F 0.23 tolerated(0.27) benign(0.049) TCGA-Z6-AAPN-01 11 89222104 89222104 G A NOX4 Intron 0.20 TCGA-Z6-AAPN-01 12 102061578 102061578 A G MYBPC1 Missense_Mutation p.T802A 0.19 deleterious(0.01) benign(0.005) TCGA-Z6-AAPN-01 12 107385586 107385586 C G CRY1 3'UTR 0.08 TCGA-Z6-AAPN-01 12 111087122 111087122 C G HVCN1 3'UTR 0.46 TCGA-Z6-AAPN-01 12 112143731 112143731 G C ACAD10 Missense_Mutation p.D176H 0.50 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 12 120875903 120875903 C T COX6A1 5'UTR 0.48 TCGA-Z6-AAPN-01 12 123214080 123214080 C T HCAR1 Missense_Mutation p.M269I 0.08 tolerated(0.08) benign(0.003) TCGA-Z6-AAPN-01 12 132467003 132467003 C G EP400 Missense_Mutation p.Q637E 0.39 unknown(0) TCGA-Z6-AAPN-01 12 19529232 19529232 G C PLEKHA5 3'UTR 0.47 TCGA-Z6-AAPN-01 12 2783715 2783715 G C CACNA1C Missense_Mutation p.E1627Q 0.15 deleterious(0.01) possibly_damaging(0.877) TCGA-Z6-AAPN-01 12 393434 393434 C G KDM5A 3'UTR 0.40 TCGA-Z6-AAPN-01 12 45567423 45567423 C T PLEKHA8P1 RNA 0.18 TCGA-Z6-AAPN-01 12 48531621 48531621 G A PFKM Missense_Mutation p.V423I 0.13 deleterious(0.02) possibly_damaging(0.867) TCGA-Z6-AAPN-01 12 49427918 49427918 C A KMT2D Nonsense_Mutation p.E3558* 0.22 TCGA-Z6-AAPN-01 12 50186476 50186476 C G NCKAP5L Missense_Mutation p.E1212Q 0.27 tolerated(1) benign(0) TCGA-Z6-AAPN-01 12 51213786 51213786 C G ATF1 3'UTR 0.17 TCGA-Z6-AAPN-01 12 51393017 51393017 C T SLC11A2 Silent p.R234R 0.08 TCGA-Z6-AAPN-01 12 51457583 51457583 C G CSRNP2 Missense_Mutation p.Q526H 0.18 tolerated_low_confidence(0.12) benign(0.14) TCGA-Z6-AAPN-01 12 52056610 52056610 G A SCN8A Silent p.A3A 0.30 TCGA-Z6-AAPN-01 12 52213863 52213863 G C RP11-923I11.6 RNA 0.25 TCGA-Z6-AAPN-01 12 52380666 52380666 G A ACVR1B Missense_Mutation p.A442T 0.14 tolerated(0.17) probably_damaging(0.999) TCGA-Z6-AAPN-01 12 53242563 53242563 G C KRT78 Missense_Mutation p.S51C 0.24 deleterious(0.02) possibly_damaging(0.7) TCGA-Z6-AAPN-01 12 54905766 54905766 C G NCKAP1L Missense_Mutation p.S273C 0.19 deleterious(0.01) possibly_damaging(0.778) TCGA-Z6-AAPN-01 12 5672624 5672624 C G ANO2 Silent p.L946L 0.54 TCGA-Z6-AAPN-01 12 56826260 56826260 G T TIMELESS Missense_Mutation p.H194N 0.26 tolerated(0.05) possibly_damaging(0.809) TCGA-Z6-AAPN-01 12 66700240 66700240 G C HELB Missense_Mutation p.L241F 0.09 deleterious(0.05) possibly_damaging(0.473) TCGA-Z6-AAPN-01 12 7188496 7188496 G A C1R Silent p.R434R 0.36 TCGA-Z6-AAPN-01 12 75893570 75893570 T G KRR1 3'UTR 0.27 TCGA-Z6-AAPN-01 12 82752046 82752046 C A CCDC59 Missense_Mutation p.W37L 0.21 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 12 88442121 88442124 TAAG - C12orf29 Frame_Shift_Del p.K301Vfs*7 0.45 TCGA-Z6-AAPN-01 12 90003718 90003718 G C ATP2B1 Missense_Mutation p.A813G 0.26 deleterious(0) possibly_damaging(0.663) TCGA-Z6-AAPN-01 12 99447069 99447069 C T ANKS1B Missense_Mutation p.D882N 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-Z6-AAPN-01 13 101266675 101266675 G C TMTC4 Missense_Mutation p.L616V 0.20 tolerated(0.19) benign(0.085) TCGA-Z6-AAPN-01 13 107187251 107187251 C G EFNB2 Missense_Mutation p.R21T 0.26 tolerated(0.25) benign(0.097) TCGA-Z6-AAPN-01 13 111117830 111117830 G C COL4A2 Missense_Mutation p.G619R 0.10 benign(0.013) TCGA-Z6-AAPN-01 13 114523706 114523706 A G GAS6 3'UTR 0.38 TCGA-Z6-AAPN-01 13 20039660 20039660 C A TPTE2 Missense_Mutation p.R186I 0.11 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 13 36410271 36410271 C T DCLK1 Silent p.S376S 0.11 TCGA-Z6-AAPN-01 13 41515340 41515340 G A ELF1 Nonsense_Mutation p.Q325* 0.23 TCGA-Z6-AAPN-01 13 77579580 77579580 T G FBXL3 3'UTR 0.11 TCGA-Z6-AAPN-01 13 77671764 77671764 G C MYCBP2 Missense_Mutation p.I3137M 0.23 probably_damaging(0.983) TCGA-Z6-AAPN-01 13 84453028 84453028 G A SLITRK1 3'UTR 0.22 TCGA-Z6-AAPN-01 13 93879852 93879852 C T GPC6 Missense_Mutation p.P48L 0.47 deleterious(0) probably_damaging(0.982) TCGA-Z6-AAPN-01 13 95271749 95271749 A C GPR180 Silent p.P238P 0.17 TCGA-Z6-AAPN-01 13 95858835 95858835 G C ABCC4 Nonsense_Mutation p.S371* 0.15 TCGA-Z6-AAPN-01 14 102392292 102392292 G A PPP2R5C 3'UTR 0.27 TCGA-Z6-AAPN-01 14 105172433 105172433 G A INF2 Missense_Mutation p.D255N 0.36 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 14 105617715 105617715 G C JAG2 Missense_Mutation p.S391W 0.32 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 14 21852324 21852324 G C SUPT16H 5'UTR 0.31 TCGA-Z6-AAPN-01 14 22363081 22363081 C A TRAV8-4 Nonsense_Mutation p.S71* 0.30 TCGA-Z6-AAPN-01 14 47120658 47120658 G C RPL10L Missense_Mutation p.F94L 0.30 deleterious(0.04) benign(0.06) TCGA-Z6-AAPN-01 14 51721328 51721328 G C TMX1 3'UTR 0.30 TCGA-Z6-AAPN-01 14 61190785 61190785 G C SIX4 Missense_Mutation p.S3C 0.14 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-Z6-AAPN-01 14 63416702 63416702 T G KCNH5 Intron 0.39 TCGA-Z6-AAPN-01 14 67804908 67804908 G A ATP6V1D 3'UTR 0.29 TCGA-Z6-AAPN-01 14 80329346 80329346 G A NRXN3 3'Flank 0.47 TCGA-Z6-AAPN-01 14 90650758 90650758 C G KCNK13 Nonsense_Mutation p.S213* 0.33 TCGA-Z6-AAPN-01 14 94545833 94545833 C G DDX24 Missense_Mutation p.E86Q 0.20 tolerated(0.16) benign(0.011) TCGA-Z6-AAPN-01 14 99636165 99636165 G C BCL11B 3'UTR 0.33 TCGA-Z6-AAPN-01 15 24921665 24921665 A T NPAP1 Silent p.S217S 0.20 TCGA-Z6-AAPN-01 15 37183707 37183707 C G MEIS2 3'UTR 0.29 TCGA-Z6-AAPN-01 15 39545303 39545303 G A C15orf54 3'UTR 0.18 TCGA-Z6-AAPN-01 15 40864051 40864051 G C RPUSD2 Missense_Mutation p.K285N 0.23 deleterious(0) probably_damaging(0.992) TCGA-Z6-AAPN-01 15 41231089 41231089 C G DLL4 3'UTR 0.38 TCGA-Z6-AAPN-01 15 52527916 52527916 C T MYO5C Silent p.Q971Q 0.32 TCGA-Z6-AAPN-01 15 56394372 56394372 C G RFX7 Missense_Mutation p.D200H 0.18 deleterious(0) probably_damaging(0.973) TCGA-Z6-AAPN-01 15 73614969 73614969 C A HCN4 Missense_Mutation p.K1155N 0.62 deleterious_low_confidence(0.01) probably_damaging(0.916) TCGA-Z6-AAPN-01 15 75249552 75249552 C G RPP25 5'UTR 0.47 TCGA-Z6-AAPN-01 15 77777784 77777784 G A HMG20A 3'UTR 0.42 TCGA-Z6-AAPN-01 15 78873159 78873159 C G CHRNA5 Missense_Mutation p.S38C 0.34 tolerated(0.08) possibly_damaging(0.579) TCGA-Z6-AAPN-01 15 86118491 86118491 A G AKAP13 Silent p.E264E 0.35 TCGA-Z6-AAPN-01 16 14042187 14042187 G A ERCC4 Missense_Mutation p.G912R 0.08 deleterious(0.01) possibly_damaging(0.448) TCGA-Z6-AAPN-01 16 1841183 1841183 G C IGFALS Silent p.L450L 0.11 TCGA-Z6-AAPN-01 16 18937412 18937412 G C SMG1 5'UTR 0.28 TCGA-Z6-AAPN-01 16 19628044 19628044 C T C16orf62 Nonsense_Mutation p.Q469* 0.28 TCGA-Z6-AAPN-01 16 2552628 2552628 C G TBC1D24 3'UTR 0.14 TCGA-Z6-AAPN-01 16 29899913 29899913 G A SEZ6L2 Silent p.I329I 0.41 TCGA-Z6-AAPN-01 16 30392739 30392739 C G SEPT1 Missense_Mutation p.E126Q 0.29 benign(0.406) TCGA-Z6-AAPN-01 16 31004737 31004737 G C STX1B Missense_Mutation p.I202M 0.34 tolerated(0.81) benign(0.159) TCGA-Z6-AAPN-01 16 31926132 31926132 C G ZNF267 Missense_Mutation p.H188D 0.33 deleterious(0.01) benign(0.101) TCGA-Z6-AAPN-01 16 32063551 32063551 C T AC142381.1 Nonsense_Mutation p.Q81* 0.24 TCGA-Z6-AAPN-01 16 34739560 34739560 G A RP11-80F22.15 RNA 0.21 TCGA-Z6-AAPN-01 16 47683022 47683022 T G PHKB Missense_Mutation p.I568M 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-Z6-AAPN-01 16 4863802 4863802 C T GLYR1 Missense_Mutation p.R352H 0.12 deleterious(0.05) benign(0.151) TCGA-Z6-AAPN-01 16 4949116 4949116 G C PPL Missense_Mutation p.F258L 0.27 deleterious(0) possibly_damaging(0.895) TCGA-Z6-AAPN-01 16 5094240 5094240 C G C16orf89 3'UTR 0.26 TCGA-Z6-AAPN-01 16 55527132 55527132 G C MMP2 Missense_Mutation p.E467Q 0.41 tolerated(0.07) benign(0.062) TCGA-Z6-AAPN-01 16 68009657 68009657 G C DPEP3 3'UTR 0.22 TCGA-Z6-AAPN-01 16 717619 717619 C A WDR90 3'UTR 0.26 TCGA-Z6-AAPN-01 16 85141485 85141485 C G FAM92B Silent p.L131L 0.27 TCGA-Z6-AAPN-01 16 85141517 85141517 C G FAM92B Missense_Mutation p.E121Q 0.37 deleterious(0) probably_damaging(0.998) TCGA-Z6-AAPN-01 17 17721640 17721640 G C SREBF1 Missense_Mutation p.L403V 0.27 deleterious(0) probably_damaging(0.96) TCGA-Z6-AAPN-01 17 2278855 2278855 G C SGSM2 Missense_Mutation p.E724Q 0.35 tolerated(0.4) benign(0.239) TCGA-Z6-AAPN-01 17 2290288 2290288 C A MNT Silent p.V552V 0.33 TCGA-Z6-AAPN-01 17 30981621 30981621 G T MYO1D Silent p.L788L 0.30 TCGA-Z6-AAPN-01 17 3324821 3324821 G A OR3A3 Silent p.L320L 0.44 TCGA-Z6-AAPN-01 17 3385000 3385000 G C ASPA Missense_Mutation p.D114H 0.21 deleterious(0) probably_damaging(0.988) TCGA-Z6-AAPN-01 17 34171853 34171853 G C TAF15 Missense_Mutation p.G517A 0.12 deleterious_low_confidence(0) unknown(0) TCGA-Z6-AAPN-01 17 36719704 36719704 C T SRCIN1 Missense_Mutation p.E199K 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-Z6-AAPN-01 17 39412234 39412234 G A KRTAP9-9 3'UTR 0.30 TCGA-Z6-AAPN-01 17 42397473 42397473 G C SLC25A39 Missense_Mutation p.R326G 0.36 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 17 43907863 43907863 C A CRHR1 Nonsense_Mutation p.Y241* 0.37 TCGA-Z6-AAPN-01 17 43912423 43912423 C G CRHR1 3'UTR 0.29 TCGA-Z6-AAPN-01 17 45922962 45922962 G C SP6 3'UTR 0.13 TCGA-Z6-AAPN-01 17 57288495 57288495 G A SMG8 Silent p.V361V 0.36 TCGA-Z6-AAPN-01 17 57918648 57918648 G T VMP1 3'Flank 0.22 TCGA-Z6-AAPN-01 17 58571889 58571889 G C APPBP2 Missense_Mutation p.S106C 0.14 tolerated(0.11) benign(0.003) TCGA-Z6-AAPN-01 17 62496429 62496429 C G DDX5 Missense_Mutation p.R486T 0.41 tolerated(0.09) benign(0.002) TCGA-Z6-AAPN-01 17 71282205 71282205 C T CDC42EP4 Silent p.K145K 0.55 TCGA-Z6-AAPN-01 17 73494402 73494402 C G KIAA0195 Silent p.P1212P 0.43 TCGA-Z6-AAPN-01 17 7577118 7577118 C G TP53 Missense_Mutation p.V274L 0.28 deleterious(0.04) benign(0.126) TCGA-Z6-AAPN-01 17 78969547 78969547 A G CHMP6 Missense_Mutation p.K113E 0.41 tolerated(0.46) benign(0.006) TCGA-Z6-AAPN-01 17 79477227 79477227 C T ACTG1 3'UTR 0.49 TCGA-Z6-AAPN-01 18 21218851 21218851 G C ANKRD29 Missense_Mutation p.L98V 0.14 deleterious(0) probably_damaging(0.998) TCGA-Z6-AAPN-01 18 28993211 28993211 G C DSG4 Missense_Mutation p.D945H 0.40 deleterious(0) probably_damaging(0.991) TCGA-Z6-AAPN-01 18 346689 346689 C A COLEC12 Silent p.L311L 0.20 TCGA-Z6-AAPN-01 18 35145938 35145938 T C CELF4 5'UTR 0.20 TCGA-Z6-AAPN-01 18 48581229 48581229 C G SMAD4 Nonsense_Mutation p.S178* 0.12 TCGA-Z6-AAPN-01 18 58038944 58038944 G C MC4R Silent p.V213V 0.44 TCGA-Z6-AAPN-01 18 63430240 63430240 C G CDH7 Missense_Mutation p.F54L 0.35 tolerated(0.08) probably_damaging(0.999) TCGA-Z6-AAPN-01 18 71920714 71920714 C G CYB5A 3'UTR 0.20 TCGA-Z6-AAPN-01 18 71920820 71920820 C A CYB5A Nonstop_Mutation p.*135Lext*73 0.23 TCGA-Z6-AAPN-01 18 9537334 9537334 G C RALBP1 3'UTR 0.31 TCGA-Z6-AAPN-01 19 1005401 1005401 G T GRIN3B Missense_Mutation p.S634I 0.25 tolerated(0.35) benign(0.241) TCGA-Z6-AAPN-01 19 1107645 1107645 A T SBNO2 3'UTR 0.30 TCGA-Z6-AAPN-01 19 11488935 11488935 C T EPOR Missense_Mutation p.G418R 0.35 tolerated(0.36) benign(0.035) TCGA-Z6-AAPN-01 19 11616949 11616949 C G ECSIT 3'UTR 0.27 TCGA-Z6-AAPN-01 19 1220640 1220640 C T STK11 Nonsense_Mutation p.Q220* 0.33 TCGA-Z6-AAPN-01 19 12882120 12882120 G C HOOK2 Nonsense_Mutation p.S205* 0.30 TCGA-Z6-AAPN-01 19 14183884 14183884 C G hsa-mir-1199 Silent p.L63L 0.20 TCGA-Z6-AAPN-01 19 15052578 15052578 C G OR7C2 Missense_Mutation p.T93S 0.35 tolerated_low_confidence(0.5) benign(0.05) TCGA-Z6-AAPN-01 19 15366974 15366974 T C BRD4 Missense_Mutation p.H551R 0.24 benign(0.227) TCGA-Z6-AAPN-01 19 16770258 16770258 C G CTC-429P9.4 Silent p.L21L 0.26 TCGA-Z6-AAPN-01 19 19653312 19653312 G A CILP2 Missense_Mutation p.D241N 0.21 tolerated(0.16) benign(0.038) TCGA-Z6-AAPN-01 19 30414647 30414647 C T CTC-448F2.3 3'Flank 0.15 TCGA-Z6-AAPN-01 19 33359402 33359402 C G SLC7A9 Missense_Mutation p.E13D 0.13 tolerated(0.52) benign(0.001) TCGA-Z6-AAPN-01 19 33462550 33462550 G C CEP89 Intron 0.19 TCGA-Z6-AAPN-01 19 37211573 37211573 G C ZNF567 3'UTR 0.11 TCGA-Z6-AAPN-01 19 37382734 37382734 C A ZNF829 Missense_Mutation p.G401V 0.18 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 19 37464461 37464461 C T ZNF568 5'UTR 0.17 TCGA-Z6-AAPN-01 19 37619881 37619881 G A ZNF420 Missense_Mutation p.R663K 0.23 tolerated(0.18) benign(0) TCGA-Z6-AAPN-01 19 39327114 39327114 C T HNRNPL 3'UTR 0.10 TCGA-Z6-AAPN-01 19 42343053 42343053 C T LYPD4 Missense_Mutation p.R38K 0.27 tolerated(0.27) probably_damaging(0.991) TCGA-Z6-AAPN-01 19 44764147 44764147 G A ZNF233 5'UTR 0.33 TCGA-Z6-AAPN-01 19 48176990 48176990 C G GLTSCR1 Missense_Mutation p.L19V 0.07 unknown(0) TCGA-Z6-AAPN-01 19 49990672 49990672 G A RPL13A 5'Flank 0.25 TCGA-Z6-AAPN-01 19 55175698 55175698 C T LILRB4 Silent p.S139S 0.12 TCGA-Z6-AAPN-01 19 58018634 58018634 G A ZNF773 Missense_Mutation p.E391K 0.14 tolerated(0.07) benign(0.211) TCGA-Z6-AAPN-01 19 8601234 8601234 C T MYO1F Missense_Mutation p.E649K 0.30 tolerated(0.45) benign(0.329) TCGA-Z6-AAPN-01 1 10218487 10218487 T A UBE4B Missense_Mutation p.F1000L 0.07 tolerated(0.39) benign(0.177) TCGA-Z6-AAPN-01 1 10434400 10434400 C G KIF1B Missense_Mutation p.S1612C 0.32 tolerated(0.05) possibly_damaging(0.694) TCGA-Z6-AAPN-01 1 109517260 109517260 G C WDR47 Missense_Mutation p.H847D 0.12 deleterious(0) possibly_damaging(0.524) TCGA-Z6-AAPN-01 1 109955703 109955703 C G PSMA5 Missense_Mutation p.R93T 0.23 deleterious(0) probably_damaging(0.988) TCGA-Z6-AAPN-01 1 1110887 1110887 C T TTLL10 Intron 0.27 TCGA-Z6-AAPN-01 1 11561424 11561424 G A PTCHD2 Silent p.A125A 0.16 TCGA-Z6-AAPN-01 1 119467289 119467289 C G TBX15 Missense_Mutation p.E119Q 0.17 deleterious(0) benign(0.345) TCGA-Z6-AAPN-01 1 12012751 12012751 C T PLOD1 Nonsense_Mutation p.Q180* 0.37 TCGA-Z6-AAPN-01 1 12012771 12012771 C G PLOD1 Missense_Mutation p.I186M 0.44 deleterious(0.01) possibly_damaging(0.872) TCGA-Z6-AAPN-01 1 13933769 13933769 G A PDPN Missense_Mutation p.E133K 0.14 tolerated(0.22) benign(0.003) TCGA-Z6-AAPN-01 1 145475131 145475131 C G ANKRD34A 3'UTR 0.34 TCGA-Z6-AAPN-01 1 146727518 146727518 G C CHD1L Missense_Mutation p.R133T 0.25 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 1 150444823 150444823 A G RPRD2 Silent p.T1133T 0.31 TCGA-Z6-AAPN-01 1 151377628 151377628 C G POGZ Missense_Mutation p.D1295H 0.37 deleterious(0.01) benign(0.021) TCGA-Z6-AAPN-01 1 152058803 152058803 C T TCHHL1 Missense_Mutation p.G452E 0.32 tolerated(0.64) possibly_damaging(0.575) TCGA-Z6-AAPN-01 1 152127159 152127159 C T RPTN 3'UTR 0.26 TCGA-Z6-AAPN-01 1 152573397 152573397 C G LCE3C Missense_Mutation p.Q64E 0.65 deleterious_low_confidence(0.03) unknown(0) TCGA-Z6-AAPN-01 1 153066153 153066153 C T SPRR2E Silent p.E25E 0.18 TCGA-Z6-AAPN-01 1 154935308 154935308 G C SHC1 3'UTR 0.25 TCGA-Z6-AAPN-01 1 154987266 154987266 G C ZBTB7B Missense_Mutation p.E78Q 0.23 deleterious(0) possibly_damaging(0.61) TCGA-Z6-AAPN-01 1 155228738 155228738 C A SCAMP3 Missense_Mutation p.Q132H 0.15 deleterious(0.05) possibly_damaging(0.841) TCGA-Z6-AAPN-01 1 159171026 159171026 T A CADM3 3'UTR 0.21 TCGA-Z6-AAPN-01 1 160113373 160113373 A - ATP1A2 3'UTR 0.25 TCGA-Z6-AAPN-01 1 161068192 161068192 G C KLHDC9 5'UTR 0.38 TCGA-Z6-AAPN-01 1 16263970 16263970 C G SPEN Missense_Mutation p.L3447V 0.16 benign(0.052) TCGA-Z6-AAPN-01 1 1684250 1684250 G A NADK 3'UTR 0.13 TCGA-Z6-AAPN-01 1 170688965 170688965 G C PRRX1 Missense_Mutation p.E114Q 0.24 tolerated(0.11) probably_damaging(0.992) TCGA-Z6-AAPN-01 1 173854791 173854791 G C ZBTB37 Missense_Mutation p.M347I 0.26 tolerated(0.24) benign(0) TCGA-Z6-AAPN-01 1 17405696 17405696 C G PADI2 Intron 0.33 TCGA-Z6-AAPN-01 1 177000021 177000021 C T ASTN1 Silent p.V311V 0.22 TCGA-Z6-AAPN-01 1 179073137 179073137 T G ABL2 3'UTR 0.15 TCGA-Z6-AAPN-01 1 182829167 182829167 G A DHX9 Missense_Mutation p.E394K 0.29 tolerated(1) benign(0.009) TCGA-Z6-AAPN-01 1 183093999 183093999 G C LAMC1 Missense_Mutation p.D879H 0.10 tolerated(0.06) possibly_damaging(0.658) TCGA-Z6-AAPN-01 1 186275881 186275881 C G PRG4 Missense_Mutation p.L344V 0.16 unknown(0) TCGA-Z6-AAPN-01 1 19166648 19166648 G T TAS1R2 Silent p.I655I 0.38 TCGA-Z6-AAPN-01 1 19547522 19547522 C G EMC1 Intron 0.25 TCGA-Z6-AAPN-01 1 200376438 200376438 G C ZNF281 Missense_Mutation p.S799C 0.21 deleterious(0) possibly_damaging(0.87) TCGA-Z6-AAPN-01 1 205290713 205290713 G C NUAK2 Missense_Mutation p.S15W 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.563) TCGA-Z6-AAPN-01 1 214814749 214814749 T G CENPF Missense_Mutation p.L1023R 0.15 probably_damaging(0.948) TCGA-Z6-AAPN-01 1 215931947 215931947 C G USH2A Missense_Mutation p.W3793C 0.24 probably_damaging(1) TCGA-Z6-AAPN-01 1 22148534 22148534 C G LDLRAD2 Intron 0.33 TCGA-Z6-AAPN-01 1 222713363 222713363 T C HHIPL2 Missense_Mutation p.N480S 0.25 tolerated(0.08) benign(0.194) TCGA-Z6-AAPN-01 1 225684595 225684595 C G ENAH 3'UTR 0.27 TCGA-Z6-AAPN-01 1 229459933 229459933 G A CCSAP 3'UTR 0.23 TCGA-Z6-AAPN-01 1 237997115 237997115 C T RYR2 3'UTR 0.28 TCGA-Z6-AAPN-01 1 241798135 241798135 C G CHML Missense_Mutation p.D312H 0.27 deleterious(0) possibly_damaging(0.746) TCGA-Z6-AAPN-01 1 241951283 241951283 C A WDR64 Missense_Mutation p.S936R 0.25 tolerated(0.06) benign(0.319) TCGA-Z6-AAPN-01 1 247076622 247076622 T C AHCTF1 Silent p.A165A 0.33 TCGA-Z6-AAPN-01 1 247920874 247920874 A T OR1C1 Missense_Mutation p.S279T 0.19 tolerated(1) benign(0.004) TCGA-Z6-AAPN-01 1 249211387 249211387 G A PGBD2 Missense_Mutation p.E202K 0.24 deleterious(0) possibly_damaging(0.805) TCGA-Z6-AAPN-01 1 31211805 31211805 G C LAPTM5 Missense_Mutation p.F164L 0.22 tolerated(0.54) benign(0.329) TCGA-Z6-AAPN-01 1 32126208 32126208 C G COL16A1 Missense_Mutation p.R1286T 0.22 unknown(0) TCGA-Z6-AAPN-01 1 32222191 32222191 A C BAI2 Missense_Mutation p.F83V 0.23 tolerated(0.79) probably_damaging(0.997) TCGA-Z6-AAPN-01 1 36211119 36211119 C T CLSPN Missense_Mutation p.E967K 0.16 tolerated(0.12) benign(0.099) TCGA-Z6-AAPN-01 1 3756340 3756340 C T CEP104 Silent p.R189R 0.30 TCGA-Z6-AAPN-01 1 38078221 38078221 G A RSPO1 3'UTR 0.11 TCGA-Z6-AAPN-01 1 39800706 39800706 C G MACF1 Intron 0.11 TCGA-Z6-AAPN-01 1 39881069 39881069 G C KIAA0754 3'UTR 0.31 TCGA-Z6-AAPN-01 1 40236869 40236869 G C OXCT2 Nonsense_Mutation p.S20* 0.30 TCGA-Z6-AAPN-01 1 40981820 40981820 G C EXO5 3'Flank 0.16 TCGA-Z6-AAPN-01 1 43826244 43826244 G C CDC20 Missense_Mutation p.W276C 0.23 deleterious(0) probably_damaging(0.929) TCGA-Z6-AAPN-01 1 44474228 44474228 G A SLC6A9 Silent p.I202I 0.26 TCGA-Z6-AAPN-01 1 49227056 49227056 C A BEND5 Nonsense_Mutation p.E105* 0.15 TCGA-Z6-AAPN-01 1 51767904 51767904 C A TTC39A Intron 0.16 TCGA-Z6-AAPN-01 1 62237287 62237287 C G INADL Missense_Mutation p.L237V 0.06 tolerated(0.37) benign(0.005) TCGA-Z6-AAPN-01 1 6266692 6266692 G C RNF207 Missense_Mutation p.E33Q 0.22 tolerated(0.2) possibly_damaging(0.531) TCGA-Z6-AAPN-01 1 63068045 63068045 C G ANGPTL3 Missense_Mutation p.L309V 0.18 deleterious(0) probably_damaging(0.96) TCGA-Z6-AAPN-01 1 71871455 71871455 T G NEGR1 3'UTR 0.23 TCGA-Z6-AAPN-01 1 74663999 74663999 C G FPGT-TNNI3K Missense_Mutation p.R26G 0.11 deleterious_low_confidence(0) benign(0.013) TCGA-Z6-AAPN-01 1 74715181 74715181 G A FPGT-TNNI3K Missense_Mutation p.R177H 0.22 tolerated(0.07) possibly_damaging(0.809) TCGA-Z6-AAPN-01 1 75805272 75805272 G A SLC44A5 Silent p.A32A 0.14 TCGA-Z6-AAPN-01 1 77676165 77676165 C G PIGK Missense_Mutation p.E35Q 0.18 tolerated(0.22) benign(0.01) TCGA-Z6-AAPN-01 1 78163138 78163138 G A USP33 Missense_Mutation p.S898F 0.25 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 1 89426940 89426940 C G CCBL2 Missense_Mutation p.A233P 0.14 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 1 94370138 94370138 C G GCLM Missense_Mutation p.D45H 0.20 deleterious(0) possibly_damaging(0.838) TCGA-Z6-AAPN-01 1 94639155 94639155 G A ARHGAP29 3'UTR 0.16 TCGA-Z6-AAPN-01 1 9796040 9796040 G A CLSTN1 Missense_Mutation p.S546F 0.15 deleterious(0) possibly_damaging(0.892) TCGA-Z6-AAPN-01 1 99771566 99771566 G A LPPR4 Missense_Mutation p.R431K 0.40 deleterious(0.01) probably_damaging(0.91) TCGA-Z6-AAPN-01 20 10619280 10619280 G C JAG1 3'UTR 0.20 TCGA-Z6-AAPN-01 20 20024186 20024186 C G CRNKL1 Missense_Mutation p.E469Q 0.43 deleterious(0.01) probably_damaging(0.979) TCGA-Z6-AAPN-01 20 25059403 25059403 G A VSX1 Intron 0.08 TCGA-Z6-AAPN-01 20 2597825 2597825 A G TMC2 Missense_Mutation p.E683G 0.47 deleterious(0) probably_damaging(0.938) TCGA-Z6-AAPN-01 20 30358170 30358170 G A TPX2 Silent p.Q127Q 0.17 TCGA-Z6-AAPN-01 20 31115602 31115602 T C C20orf112 Missense_Mutation p.K52E 0.23 deleterious(0.01) possibly_damaging(0.662) TCGA-Z6-AAPN-01 20 3190102 3190102 G A ITPA 5'UTR 0.22 TCGA-Z6-AAPN-01 20 35869750 35869750 G A RPN2 3'UTR 0.26 TCGA-Z6-AAPN-01 20 39987112 39987112 G C LPIN3 Missense_Mutation p.E781Q 0.27 tolerated(0.29) benign(0.035) TCGA-Z6-AAPN-01 20 418412 418412 T C TBC1D20 3'UTR 0.20 TCGA-Z6-AAPN-01 20 43942696 43942696 G C RBPJL Missense_Mutation p.G260A 0.10 tolerated(0.14) benign(0.147) TCGA-Z6-AAPN-01 20 47704604 47704604 C T CSE1L Silent p.L594L 0.14 TCGA-Z6-AAPN-01 20 56138676 56138676 C T PCK1 Missense_Mutation p.P285L 0.10 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 20 56941966 56941966 G A RAB22A 3'UTR 0.23 TCGA-Z6-AAPN-01 20 61300307 61300307 C T SLCO4A1 Silent p.F634F 0.10 TCGA-Z6-AAPN-01 21 18938077 18938077 C G CXADR 3'UTR 0.07 TCGA-Z6-AAPN-01 21 34860764 34860764 C G DNAJC28 Missense_Mutation p.D313H 0.22 deleterious(0.02) possibly_damaging(0.872) TCGA-Z6-AAPN-01 21 35468289 35468289 C A SLC5A3 Missense_Mutation p.F264L 0.19 tolerated(1) benign(0.326) TCGA-Z6-AAPN-01 21 46932395 46932395 C G COL18A1 3'UTR 0.08 TCGA-Z6-AAPN-01 22 17119509 17119509 G A TPTEP1 RNA 0.25 TCGA-Z6-AAPN-01 22 17488987 17488987 G A GAB4 Silent p.P6P 0.38 TCGA-Z6-AAPN-01 22 28193043 28193043 C G MN1 Missense_Mutation p.Q1163H 0.25 probably_damaging(0.999) TCGA-Z6-AAPN-01 22 30730595 30730595 C G SF3A1 Silent p.G790G 0.24 TCGA-Z6-AAPN-01 22 31602325 31602325 G C RNF185 3'UTR 0.43 TCGA-Z6-AAPN-01 22 41831698 41831698 A G TOB2 3'UTR 0.06 TCGA-Z6-AAPN-01 22 42992255 42992255 C G POLDIP3 Missense_Mutation p.L250F 0.43 deleterious(0.04) possibly_damaging(0.842) TCGA-Z6-AAPN-01 2 113331138 113331138 G A POLR1B Splice_Site p.X758_splice 0.22 TCGA-Z6-AAPN-01 2 116601830 116601830 G C DPP10 3'Flank 0.20 TCGA-Z6-AAPN-01 2 169984871 169984871 C G LRP2 3'UTR 0.33 TCGA-Z6-AAPN-01 2 172336638 172336638 G C DCAF17 Missense_Mutation p.D453H 0.20 deleterious(0.02) probably_damaging(0.989) TCGA-Z6-AAPN-01 2 176965274 176965274 G C HOXD12 Missense_Mutation p.G200A 0.29 tolerated(1) benign(0.162) TCGA-Z6-AAPN-01 2 178482187 178482187 C T TTC30A Missense_Mutation p.E415K 0.10 tolerated(0.15) benign(0.279) TCGA-Z6-AAPN-01 2 179319173 179319173 C G DFNB59 Missense_Mutation p.S109C 0.27 tolerated(0.19) benign(0.023) TCGA-Z6-AAPN-01 2 180846701 180846701 C G CWC22 Missense_Mutation p.R77T 0.17 deleterious(0.03) benign(0.005) TCGA-Z6-AAPN-01 2 181846835 181846835 G A UBE2E3 Silent p.A22A 0.41 TCGA-Z6-AAPN-01 2 197777708 197777708 A G PGAP1 Silent p.L183L 0.32 TCGA-Z6-AAPN-01 2 207346014 207346014 T C ADAM23 Missense_Mutation p.L164P 0.33 deleterious(0.02) probably_damaging(0.974) TCGA-Z6-AAPN-01 2 210737501 210737501 G C UNC80 Missense_Mutation p.R1218T 0.27 probably_damaging(0.974) TCGA-Z6-AAPN-01 2 219557016 219557016 G T STK36 Nonsense_Mutation p.G639* 0.60 TCGA-Z6-AAPN-01 2 219870902 219870902 G A CCDC108 Missense_Mutation p.A1588V 0.39 tolerated(0.13) benign(0.06) TCGA-Z6-AAPN-01 2 220437184 220437184 C G INHA Missense_Mutation p.L30V 0.50 deleterious(0) possibly_damaging(0.893) TCGA-Z6-AAPN-01 2 220476466 220476466 C G STK11IP Missense_Mutation p.P760A 0.38 tolerated(0.32) benign(0.117) TCGA-Z6-AAPN-01 2 230744786 230744786 G A TRIP12 Missense_Mutation p.R4W 0.46 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-Z6-AAPN-01 2 238261195 238261195 C G COL6A3 Silent p.L2241L 0.31 TCGA-Z6-AAPN-01 2 25497920 25497920 C G DNMT3A Missense_Mutation p.E177Q 0.12 deleterious(0) probably_damaging(0.968) TCGA-Z6-AAPN-01 2 27679461 27679461 C G IFT172 Missense_Mutation p.K1096N 0.14 deleterious(0.02) benign(0.16) TCGA-Z6-AAPN-01 2 27683889 27683889 G A IFT172 Silent p.F838F 0.31 TCGA-Z6-AAPN-01 2 37230747 37230747 C G HEATR5B Missense_Mutation p.G1663A 0.26 tolerated(0.13) benign(0.001) TCGA-Z6-AAPN-01 2 43924327 43924327 T G PLEKHH2 Missense_Mutation p.S174A 0.12 tolerated(0.78) benign(0.003) TCGA-Z6-AAPN-01 2 44190798 44190798 C G LRPPRC Missense_Mutation p.D473H 0.11 deleterious(0) probably_damaging(0.933) TCGA-Z6-AAPN-01 2 44547731 44547731 C T SLC3A1 Nonsense_Mutation p.R671* 0.29 TCGA-Z6-AAPN-01 2 44586684 44586684 C T PREPL Silent p.K57K 0.16 TCGA-Z6-AAPN-01 2 5833136 5833136 A C SOX11 Missense_Mutation p.K95Q 0.19 deleterious(0) probably_damaging(0.998) TCGA-Z6-AAPN-01 2 5834742 5834742 G C SOX11 3'UTR 0.26 TCGA-Z6-AAPN-01 2 60686532 60686532 A G BCL11A 3'UTR 0.36 TCGA-Z6-AAPN-01 2 63631310 63631310 G T WDPCP Missense_Mutation p.S436R 0.43 tolerated(0.2) possibly_damaging(0.878) TCGA-Z6-AAPN-01 2 68620294 68620294 G A PLEK Missense_Mutation p.G255R 0.39 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 2 74756658 74756658 G A HTRA2 5'UTR 0.27 TCGA-Z6-AAPN-01 2 85276546 85276546 C T KCMF1 Missense_Mutation p.S220F 0.53 deleterious(0) possibly_damaging(0.889) TCGA-Z6-AAPN-01 3 100086940 100086940 C G TOMM70A Missense_Mutation p.D541H 0.34 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 3 10131997 10131997 C T FANCD2 Silent p.F1235F 0.17 TCGA-Z6-AAPN-01 3 111799855 111799855 C G TMPRSS7 Missense_Mutation p.P693R 0.09 tolerated(0.86) possibly_damaging(0.779) TCGA-Z6-AAPN-01 3 118865898 118865898 G C C3orf30 Missense_Mutation p.E288Q 0.50 deleterious(0.02) probably_damaging(0.979) TCGA-Z6-AAPN-01 3 119886160 119886160 C T GPR156 Missense_Mutation p.E722K 0.13 tolerated(0.38) benign(0.004) TCGA-Z6-AAPN-01 3 120957831 120957831 G A STXBP5L Missense_Mutation p.E400K 0.24 deleterious(0) probably_damaging(0.995) TCGA-Z6-AAPN-01 3 121207808 121207808 G C POLQ Missense_Mutation p.L1324V 0.29 deleterious(0) probably_damaging(0.998) TCGA-Z6-AAPN-01 3 121417367 121417367 G A GOLGB1 Missense_Mutation p.S668L 0.18 benign(0.02) TCGA-Z6-AAPN-01 3 122003196 122003196 G C CASR Missense_Mutation p.E809Q 0.32 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 3 12447448 12447448 C T PPARG Silent p.I229I 0.29 TCGA-Z6-AAPN-01 3 127774404 127774404 A C SEC61A1 Missense_Mutation p.I41L 0.15 tolerated(0.09) benign(0.033) TCGA-Z6-AAPN-01 3 129369054 129369054 C T TMCC1 3'UTR 0.11 TCGA-Z6-AAPN-01 3 134201686 134201686 C G ANAPC13 Missense_Mutation p.E21Q 0.19 tolerated(0.29) possibly_damaging(0.448) TCGA-Z6-AAPN-01 3 137850070 137850070 G C A4GNT Nonsense_Mutation p.S10* 0.13 TCGA-Z6-AAPN-01 3 142772588 142772588 C G U2SURP Missense_Mutation p.S909C 0.15 tolerated(0.09) benign(0.276) TCGA-Z6-AAPN-01 3 152555505 152555505 G A P2RY1 3'UTR 0.32 TCGA-Z6-AAPN-01 3 158363491 158363491 C G GFM1 Nonsense_Mutation p.S52* 0.11 TCGA-Z6-AAPN-01 3 164700087 164700087 G A SI Silent p.L1787L 0.32 TCGA-Z6-AAPN-01 3 165548470 165548470 C T BCHE Missense_Mutation p.E118K 0.35 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 3 169099121 169099121 G C MECOM Missense_Mutation p.P101A 0.28 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 3 178952074 178952074 G A PIK3CA Missense_Mutation p.M1043I 0.38 tolerated(0.11) benign(0.054) TCGA-Z6-AAPN-01 3 187089154 187089154 C T RTP4 Missense_Mutation p.S245L 0.24 tolerated_low_confidence(1) benign(0.184) TCGA-Z6-AAPN-01 3 193409893 193409893 G C OPA1 Missense_Mutation p.E991Q 0.15 tolerated(0.55) benign(0.016) TCGA-Z6-AAPN-01 3 194896403 194896403 G T XXYLT1 Intron 0.31 TCGA-Z6-AAPN-01 3 195984695 195984695 T C PCYT1A Missense_Mutation p.R61G 0.26 deleterious(0) possibly_damaging(0.591) TCGA-Z6-AAPN-01 3 3097920 3097920 G C CNTN4 3'UTR 0.44 TCGA-Z6-AAPN-01 3 38240282 38240282 C G OXSR1 Missense_Mutation p.S121C 0.29 deleterious(0.04) benign(0.351) TCGA-Z6-AAPN-01 3 42799748 42799748 C T CCDC13 Missense_Mutation p.M30I 0.33 deleterious(0.01) benign(0.269) TCGA-Z6-AAPN-01 3 50085751 50085751 G C RBM6 Missense_Mutation p.R544P 0.41 tolerated(0.08) possibly_damaging(0.678) TCGA-Z6-AAPN-01 3 50106179 50106179 G C RBM6 Silent p.L1000L 0.22 TCGA-Z6-AAPN-01 3 68781812 68781812 C A FAM19A4 3'UTR 0.50 TCGA-Z6-AAPN-01 3 71732114 71732114 C G EIF4E3 3'UTR 0.12 TCGA-Z6-AAPN-01 4 111397424 111397424 G A ENPEP 5'UTR 0.27 TCGA-Z6-AAPN-01 4 125587651 125587651 G C ANKRD50 3'UTR 0.43 TCGA-Z6-AAPN-01 4 153564270 153564270 C G TMEM154 Missense_Mutation p.D150H 0.27 deleterious(0) probably_damaging(0.979) TCGA-Z6-AAPN-01 4 15707200 15707200 C T BST1 Missense_Mutation p.S84F 0.11 deleterious(0) possibly_damaging(0.816) TCGA-Z6-AAPN-01 4 159589634 159589634 G C C4orf46 3'UTR 0.30 TCGA-Z6-AAPN-01 4 165961854 165961854 G A TRIM60 Missense_Mutation p.M210I 0.31 tolerated(0.21) benign(0.048) TCGA-Z6-AAPN-01 4 167713337 167713337 C T SPOCK3 Silent p.L234L 0.25 TCGA-Z6-AAPN-01 4 169377211 169377211 C G DDX60L Missense_Mutation p.L272F 0.29 deleterious(0) probably_damaging(0.999) TCGA-Z6-AAPN-01 4 17661649 17661649 C G FAM184B Missense_Mutation p.E586Q 0.26 deleterious(0.04) benign(0.442) TCGA-Z6-AAPN-01 4 186291869 186291869 G C LRP2BP Missense_Mutation p.F301L 0.24 deleterious(0) probably_damaging(1) TCGA-Z6-AAPN-01 4 37836311 37836311 C T PGM2 Silent p.A107A 0.24 TCGA-Z6-AAPN-01 4 39448748 39448748 C G KLB Missense_Mutation p.S801W 0.21 tolerated(0.18) probably_damaging(0.998) TCGA-Z6-AAPN-01 4 39891930 39891930 C A PDS5A Nonsense_Mutation p.E609* 0.24 TCGA-Z6-AAPN-01 4 41747647 41747647 G C PHOX2B 3'UTR 0.25 TCGA-Z6-AAPN-01 4 47405694 47405694 C G GABRB1 Missense_Mutation p.I267M 0.37 deleterious(0.04) probably_damaging(0.985) TCGA-Z6-AAPN-01 4 48577189 48577189 C G FRYL Missense_Mutation p.E931Q 0.21 deleterious(0.02) benign(0.122) TCGA-Z6-AAPN-01 4 54373487 54373487 C T LNX1 Missense_Mutation p.E258K 0.25 tolerated(0.08) benign(0.297) TCGA-Z6-AAPN-01 4 81123144 81123144 C T PRDM8 Silent p.F176F 0.17 TCGA-Z6-AAPN-01 4 83821902 83821902 C A THAP9 5'Flank 0.34 TCGA-Z6-AAPN-01 5 101794130 101794130 G A SLCO6A1 Silent p.L363L 0.12 TCGA-Z6-AAPN-01 5 1033539 1033539 C T NKD2 Silent p.L85L 0.36 TCGA-Z6-AAPN-01 5 1085364 1085364 G A SLC12A7 Silent p.F300F 0.06 TCGA-Z6-AAPN-01 5 121356415 121356415 G C SRFBP1 Missense_Mutation p.D329H 0.19 deleterious(0) possibly_damaging(0.717) TCGA-Z6-AAPN-01 5 121356424 121356424 A C SRFBP1 Missense_Mutation p.K332Q 0.19 deleterious(0.01) benign(0.398) TCGA-Z6-AAPN-01 5 1213667 1213667 C G SLC6A19 Missense_Mutation p.I251M 0.10 deleterious(0) probably_damaging(0.915) TCGA-Z6-AAPN-01 5 1264696 1264696 C T TERT Missense_Mutation p.R889Q 0.06 tolerated(0.53) benign(0.022) TCGA-Z6-AAPN-01 5 126887539 126887539 G C PRRC1 Missense_Mutation p.Q423H 0.17 tolerated(0.15) probably_damaging(0.994) TCGA-Z6-AAPN-01 5 1318437 1318437 C G CLPTM1L 3'UTR 0.14 TCGA-Z6-AAPN-01 5 1330463 1330463 G A CLPTM1L Silent p.L338L 0.06 TCGA-Z6-AAPN-01 5 134007552 134007552 G A SEC24A Missense_Mutation p.E265K 0.17 tolerated(0.45) benign(0.047) TCGA-Z6-AAPN-01 5 13868052 13868052 T G DNAH5 Missense_Mutation p.E1295A 0.04 benign(0.292) TCGA-Z6-AAPN-01 5 13922323 13922323 C T DNAH5 Missense_Mutation p.E185K 0.05 benign(0.305) TCGA-Z6-AAPN-01 5 140011383 140011383 G A CD14 3'UTR 0.20 TCGA-Z6-AAPN-01 5 140710522 140710522 G C PCDHGA1 Missense_Mutation p.D91H 0.13 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-Z6-AAPN-01 5 140723799 140723799 G A PCDHGA3 Missense_Mutation p.V67I 0.16 tolerated_low_confidence(0.12) benign(0.147) TCGA-Z6-AAPN-01 5 140783516 140783516 G C PCDHGA9 Missense_Mutation p.V333L 0.10 deleterious_low_confidence(0.05) benign(0.396) TCGA-Z6-AAPN-01 5 140798107 140798107 G C PCDHGB7 Missense_Mutation p.Q227H 0.10 tolerated(0.12) benign(0.033) TCGA-Z6-AAPN-01 5 1422047 1422047 G C SLC6A3 Missense_Mutation p.L246V 0.11 tolerated(0.61) benign(0.026) TCGA-Z6-AAPN-01 5 14369614 14369614 G A TRIO Silent p.Q1066Q 0.09 TCGA-Z6-AAPN-01 5 145972589 145972589 A G PPP2R2B Missense_Mutation p.Y336H 0.18 deleterious(0.04) benign(0.351) TCGA-Z6-AAPN-01 5 156752515 156752515 C G CYFIP2 Silent p.L591L 0.19 TCGA-Z6-AAPN-01 5 16463720 16463720 C T ZNF622 Missense_Mutation p.D253N 0.12 tolerated(0.07) probably_damaging(0.923) TCGA-Z6-AAPN-01 5 176734640 176734640 G A MXD3 Silent p.F190F 0.20 TCGA-Z6-AAPN-01 5 177573128 177573128 G A RMND5B Missense_Mutation p.M236I 0.17 deleterious(0.03) benign(0.021) TCGA-Z6-AAPN-01 5 179047895 179047895 G C HNRNPH1 Nonsense_Mutation p.S132* 0.17 TCGA-Z6-AAPN-01 5 179150701 179150701 G A CANX Missense_Mutation p.R480H 0.09 tolerated(0.42) benign(0.015) TCGA-Z6-AAPN-01 5 23527657 23527657 C T PRDM9 Silent p.L820L 0.13 TCGA-Z6-AAPN-01 5 34821951 34821951 T C RAI14 Missense_Mutation p.L373S 0.18 deleterious(0.01) possibly_damaging(0.868) TCGA-Z6-AAPN-01 5 37201793 37201793 G C C5orf42 Missense_Mutation p.S1136C 0.21 tolerated(0.06) possibly_damaging(0.696) TCGA-Z6-AAPN-01 5 68485511 68485511 G C CENPH Missense_Mutation p.G17A 0.24 tolerated(0.16) benign(0.017) TCGA-Z6-AAPN-01 5 68524143 68524143 G A MRPS36 Missense_Mutation p.E75K 0.28 deleterious(0.01) possibly_damaging(0.897) TCGA-Z6-AAPN-01 5 70741606 70741606 C - RP11-136K7.2 RNA 0.19 TCGA-Z6-AAPN-01 5 70840330 70840330 G A BDP1 Missense_Mutation p.E2187K 0.24 tolerated(0.25) possibly_damaging(0.616) TCGA-Z6-AAPN-01 5 78620720 78620720 G C JMY 3'UTR 0.17 TCGA-Z6-AAPN-01 5 78940966 78940966 C A PAPD4 Missense_Mutation p.Q258K 0.15 deleterious(0.03) probably_damaging(0.958) TCGA-Z6-AAPN-01 5 89949169 89949169 G C GPR98 Missense_Mutation p.E1260Q 0.15 possibly_damaging(0.727) TCGA-Z6-AAPN-01 6 100838633 100838633 C G SIM1 Missense_Mutation p.Q635H 0.17 tolerated_low_confidence(0.37) benign(0.011) TCGA-Z6-AAPN-01 6 106553015 106553015 C G PRDM1 Missense_Mutation p.S327C 0.26 deleterious(0.02) possibly_damaging(0.841) TCGA-Z6-AAPN-01 6 112408695 112408695 C G TUBE1 5'UTR 0.21 TCGA-Z6-AAPN-01 6 128388853 128388853 G T PTPRK Silent p.V656V 0.17 TCGA-Z6-AAPN-01 6 132030636 132030636 C G CTAGE9 Missense_Mutation p.D508H 0.20 deleterious(0.03) possibly_damaging(0.829) TCGA-Z6-AAPN-01 6 135376021 135376021 C G HBS1L 5'UTR 0.29 TCGA-Z6-AAPN-01 6 136599709 136599709 T A BCLAF1 Missense_Mutation p.S104C 0.06 deleterious_low_confidence(0) benign(0.341) TCGA-Z6-AAPN-01 6 18222817 18222817 C G KDM1B 3'UTR 0.40 TCGA-Z6-AAPN-01 6 26376878 26376878 G C BTN3A2 3'UTR 0.12 TCGA-Z6-AAPN-01 6 27278167 27278167 G C POM121L2 Missense_Mutation p.P595A 0.13 tolerated(0.08) benign(0.344) TCGA-Z6-AAPN-01 6 28360708 28360708 G A ZSCAN12 Missense_Mutation p.S173F 0.25 deleterious(0.02) possibly_damaging(0.466) TCGA-Z6-AAPN-01 6 31324463 31324463 A G HLA-B Splice_Site p.X115_splice 0.19 TCGA-Z6-AAPN-01 6 31324464 31324464 C A HLA-B Splice_Site p.X115_splice 0.19 TCGA-Z6-AAPN-01 6 31615559 31615559 C T BAG6 Silent p.Q205Q 0.34 TCGA-Z6-AAPN-01 6 35392450 35392450 C T PPARD Silent p.F324F 0.28 TCGA-Z6-AAPN-01 6 45517625 45517625 G C RUNX2 3'UTR 0.28 TCGA-Z6-AAPN-01 6 70082325 70082325 G C BAI3 Missense_Mutation p.D1423H 0.36 deleterious(0) benign(0.026) TCGA-Z6-AAPN-01 6 74537744 74537744 C - CD109 3'UTR 0.23 TCGA-Z6-AAPN-01 6 75893760 75893760 G A COL12A1 Silent p.V366V 0.17 TCGA-Z6-AAPN-01 6 84669665 84669665 G C CYB5R4 3'UTR 0.14 TCGA-Z6-AAPN-01 6 86324929 86324929 C G SYNCRIP Missense_Mutation p.D473H 0.27 tolerated(0.14) unknown(0) TCGA-Z6-AAPN-01 6 88854985 88854985 C T CNR1 Silent p.S3S 0.11 TCGA-Z6-AAPN-01 6 89808431 89808431 C G SRSF12 Missense_Mutation p.D218H 0.29 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-Z6-AAPN-01 7 100685190 100685190 C G MUC17 Missense_Mutation p.S3498C 0.32 benign(0.122) TCGA-Z6-AAPN-01 7 100685292 100685292 C G MUC17 Missense_Mutation p.S3532C 0.20 possibly_damaging(0.612) TCGA-Z6-AAPN-01 7 1015230 1015230 G A COX19 5'UTR 0.06 TCGA-Z6-AAPN-01 7 149561375 149561375 G T ZNF862 3'UTR 0.17 TCGA-Z6-AAPN-01 7 16901016 16901016 A C AGR3 Missense_Mutation p.M120R 0.22 deleterious(0) probably_damaging(0.953) TCGA-Z6-AAPN-01 7 19155320 19155320 G C TWIST1 3'UTR 0.24 TCGA-Z6-AAPN-01 7 2317768 2317768 G A SNX8 Silent p.F89F 0.11 TCGA-Z6-AAPN-01 7 26231759 26231759 C T HNRNPA2B1 3'UTR 0.09 TCGA-Z6-AAPN-01 7 28997239 28997239 C G AC005013.5 5'Flank 0.13 TCGA-Z6-AAPN-01 7 44258960 44258964 TTTTG - CAMK2B 3'UTR 0.12 TCGA-Z6-AAPN-01 7 44664045 44664045 C T OGDH Nonsense_Mutation p.Q35* 0.26 TCGA-Z6-AAPN-01 7 55886880 55886880 C T SEPT14 Missense_Mutation p.E253K 0.41 tolerated(0.14) benign(0.033) TCGA-Z6-AAPN-01 7 63726538 63726538 C A ZNF679 Missense_Mutation p.T176K 0.26 tolerated(0.17) possibly_damaging(0.526) TCGA-Z6-AAPN-01 7 6541650 6541650 C T GRID2IP Missense_Mutation p.D1084N 0.31 deleterious(0) probably_damaging(0.986) TCGA-Z6-AAPN-01 7 73969808 73969808 G C GTF2IRD1 Missense_Mutation p.K701N 0.32 deleterious(0) probably_damaging(0.958) TCGA-Z6-AAPN-01 7 83634746 83634746 G C SEMA3A Missense_Mutation p.I423M 0.15 deleterious(0.03) possibly_damaging(0.506) TCGA-Z6-AAPN-01 7 91630582 91630582 G T AKAP9 Nonsense_Mutation p.E451* 0.27 TCGA-Z6-AAPN-01 7 91631495 91631495 T G AKAP9 Nonsense_Mutation p.L755* 0.05 TCGA-Z6-AAPN-01 7 91631497 91631497 G C AKAP9 Missense_Mutation p.E756Q 0.27 possibly_damaging(0.885) TCGA-Z6-AAPN-01 7 92080020 92080020 C G GATAD1 Missense_Mutation p.I127M 0.13 tolerated(0.09) possibly_damaging(0.809) TCGA-Z6-AAPN-01 7 92146692 92146692 C T PEX1 Silent p.E379E 0.09 TCGA-Z6-AAPN-01 7 93633539 93633539 G C BET1 5'UTR 0.20 TCGA-Z6-AAPN-01 7 95705494 95705494 C T DYNC1I1 Silent p.L562L 0.12 TCGA-Z6-AAPN-01 7 97862900 97862900 G C TECPR1 Missense_Mutation p.S502W 0.30 deleterious(0) benign(0.049) TCGA-Z6-AAPN-01 8 103274200 103274200 G C UBR5 Missense_Mutation p.F2595L 0.18 tolerated(0.26) possibly_damaging(0.891) TCGA-Z6-AAPN-01 8 106813358 106813358 T A ZFPM2 Missense_Mutation p.F350I 0.08 tolerated(0.1) possibly_damaging(0.718) TCGA-Z6-AAPN-01 8 117950617 117950617 C G AARD Missense_Mutation p.I45M 0.10 tolerated(0.08) benign(0.033) TCGA-Z6-AAPN-01 8 118186964 118186964 T G SLC30A8 3'Flank 0.12 TCGA-Z6-AAPN-01 8 121292979 121292979 G C COL14A1 Missense_Mutation p.D1226H 0.14 deleterious(0) benign(0.221) TCGA-Z6-AAPN-01 8 121455468 121455468 A G MRPL13 Silent p.S36S 0.13 TCGA-Z6-AAPN-01 8 145113708 145113708 G A OPLAH Silent p.R185R 0.14 TCGA-Z6-AAPN-01 8 145556659 145556659 C T SCRT1 3'UTR 0.19 TCGA-Z6-AAPN-01 8 145948071 145948071 T G ZNF251 Missense_Mutation p.E325A 0.09 deleterious(0.01) possibly_damaging(0.484) TCGA-Z6-AAPN-01 8 22451274 22451274 C T PDLIM2 Missense_Mutation p.R554W 0.17 deleterious(0) probably_damaging(0.996) TCGA-Z6-AAPN-01 8 30889113 30889113 G A PURG 3'UTR 0.20 TCGA-Z6-AAPN-01 8 38251658 38251658 A G LETM2 Missense_Mutation p.M135V 0.26 tolerated(0.22) benign(0.008) TCGA-Z6-AAPN-01 8 56695312 56695312 G A TGS1 Missense_Mutation p.R36Q 0.20 tolerated(0.06) benign(0.241) TCGA-Z6-AAPN-01 8 56912040 56912040 A C LYN Missense_Mutation p.K423T 0.11 deleterious(0) probably_damaging(0.988) TCGA-Z6-AAPN-01 8 61102468 61102468 T C CA8 3'UTR 0.21 TCGA-Z6-AAPN-01 8 62559369 62559369 G C ASPH Missense_Mutation p.L187V 0.19 tolerated_low_confidence(0.62) possibly_damaging(0.595) TCGA-Z6-AAPN-01 8 69103972 69103972 C G PREX2 Missense_Mutation p.D1454E 0.15 tolerated(1) benign(0.017) TCGA-Z6-AAPN-01 8 80942328 80942328 G A MRPS28 Silent p.F52F 0.07 TCGA-Z6-AAPN-01 8 95188895 95188895 C G CDH17 Missense_Mutation p.D100H 0.18 deleterious(0) probably_damaging(0.937) TCGA-Z6-AAPN-01 8 95444230 95444230 C G RAD54B Intron 0.17 TCGA-Z6-AAPN-01 8 99961177 99961177 G C OSR2 5'UTR 0.17 TCGA-Z6-AAPN-01 9 100839226 100839226 G A NANS Silent p.L125L 0.29 TCGA-Z6-AAPN-01 9 107579672 107579672 G C ABCA1 Missense_Mutation p.S1159C 0.25 tolerated(0.16) benign(0.035) TCGA-Z6-AAPN-01 9 115580089 115580089 C G SNX30 Silent p.L151L 0.16 TCGA-Z6-AAPN-01 9 119463515 119463515 T A TRIM32 3'UTR 0.26 TCGA-Z6-AAPN-01 9 125003773 125003773 C T RBM18 3'UTR 0.17 TCGA-Z6-AAPN-01 9 130265075 130265075 G A LRSAM1 Missense_Mutation p.C690Y 0.13 deleterious(0) probably_damaging(0.954) TCGA-Z6-AAPN-01 9 130454790 130454790 C G STXBP1 3'UTR 0.17 TCGA-Z6-AAPN-01 9 131133692 131133692 C T URM1 Silent p.F11F 0.11 TCGA-Z6-AAPN-01 9 131371527 131371527 G A SPTAN1 Silent p.A1574A 0.22 TCGA-Z6-AAPN-01 9 139310748 139310748 G C PMPCA Missense_Mutation p.E180Q 0.32 deleterious(0.04) possibly_damaging(0.893) TCGA-Z6-AAPN-01 9 140082363 140082363 C G ANAPC2 Missense_Mutation p.E104Q 0.25 tolerated(0.19) benign(0.391) TCGA-Z6-AAPN-01 9 140344061 140344061 G C NSMF Silent p.L495L 0.28 TCGA-Z6-AAPN-01 9 140672331 140672331 A C EHMT1 Intron 0.13 TCGA-Z6-AAPN-01 9 2058298 2058298 T C SMARCA2 Missense_Mutation p.L452P 0.45 benign(0.164) TCGA-Z6-AAPN-01 9 33927920 33927920 G C UBAP2 Nonsense_Mutation p.S749* 0.28 TCGA-Z6-AAPN-01 9 74970020 74970020 C G ZFAND5 3'UTR 0.25 TCGA-Z6-AAPN-01 9 75263520 75263520 C G TMC1 5'UTR 0.20 TCGA-Z6-AAPN-01 9 92220309 92220309 C G GADD45G Intron 0.29 TCGA-Z6-AAPN-01 9 95526873 95526873 C G BICD2 Missense_Mutation p.E52Q 0.23 deleterious(0) probably_damaging(0.978) TCGA-Z6-AAPN-01 9 95773521 95773521 C T FGD3 Silent p.A334A 0.33 TCGA-Z6-AAPN-01 9 96870182 96870182 G C PTPDC1 Missense_Mutation p.E793Q 0.19 deleterious(0.01) possibly_damaging(0.786) TCGA-Z6-AAPN-01 9 97346898 97346898 G A FBP2 Silent p.C129C 0.11 TCGA-Z6-AAPN-01 X 108911423 108911423 G C ACSL4 Missense_Mutation p.Q449E 0.45 tolerated(1) benign(0.181) TCGA-Z6-AAPN-01 X 111699597 111699597 T C ZCCHC16 3'UTR 0.41 TCGA-Z6-AAPN-01 X 113886032 113886032 T C HTR2C Intron 0.60 TCGA-Z6-AAPN-01 X 122613989 122613989 C T GRIA3 Intron 0.52 TCGA-Z6-AAPN-01 X 147031822 147031822 G A FMR1 3'UTR 0.55 TCGA-Z6-AAPN-01 X 150884668 150884668 G C FATE1 Missense_Mutation p.G26A 0.48 tolerated(0.63) benign(0.355) TCGA-Z6-AAPN-01 X 153295862 153295862 C G MECP2 Missense_Mutation p.E485Q 0.21 deleterious(0) unknown(0) TCGA-Z6-AAPN-01 X 16888524 16888524 C T RBBP7 5'Flank 0.39 TCGA-Z6-AAPN-01 X 17745851 17745851 G C NHS Missense_Mutation p.E1188Q 0.57 tolerated_low_confidence(0.13) benign(0.026) TCGA-Z6-AAPN-01 X 24231781 24231781 G T ZFX 3'UTR 0.40 TCGA-Z6-AAPN-01 X 43661490 43661490 C T MAOB Nonsense_Mutation p.W135* 0.44 TCGA-Z6-AAPN-01 X 48770714 48770714 C G PIM2 3'UTR 0.33 TCGA-Z6-AAPN-01 X 65241712 65241712 G C VSIG4 3'UTR 0.28 TCGA-Z6-AAPN-01 X 69259170 69259170 G C EDA 3'UTR 0.26 TCGA-Z6-AAPN-01 X 72347515 72347515 C T NAP1L6 Silent p.L69L 0.26 TCGA-Z6-AAPN-01 X 73048909 73048909 C T XIST RNA 0.47 TCGA-Z6-AAPN-01 X 74523419 74523419 C T UPRT 3'UTR 0.42 TCGA-Z6-AAPN-01 X 83128291 83128291 C G CYLC1 Nonsense_Mutation p.S192* 0.37 TCGA-Z6-AAPN-01 X 83129461 83129461 C G CYLC1 Nonsense_Mutation p.S582* 0.37 TCGA-Z6-AAPN-01 X 86880713 86880713 C G KLHL4 Missense_Mutation p.S414C 0.47 deleterious(0) possibly_damaging(0.819) TCGA-Z6-AAPN-01 X 9914723 9914723 G C SHROOM2 Missense_Mutation p.E1533Q 0.83 tolerated(0.09) probably_damaging(0.992) TCGA-Z6-AAPN-01 X 99940889 99940889 A G SYTL4 Intron 0.45 TCGA-ZR-A9CJ-01 10 53814284 53814284 C A PRKG1 Missense_Mutation p.A268E 0.24 tolerated(1) benign(0.036) TCGA-ZR-A9CJ-01 10 55973782 55973782 A G PCDH15 Missense_Mutation p.F338L 0.06 deleterious(0) benign(0.101) TCGA-ZR-A9CJ-01 10 72357828 72357828 C A PRF1 Missense_Mutation p.R550L 0.12 deleterious(0.01) possibly_damaging(0.748) TCGA-ZR-A9CJ-01 10 8006704 8006704 T C TAF3 Missense_Mutation p.S411P 0.34 deleterious(0) probably_damaging(0.991) TCGA-ZR-A9CJ-01 11 1016221 1016224 CAGA - MUC6 Frame_Shift_Del p.S2193Hfs*48 0.39 TCGA-ZR-A9CJ-01 11 1026436 1026436 G A MUC6 Missense_Mutation p.L813F 0.24 unknown(0) TCGA-ZR-A9CJ-01 11 12904607 12904607 G A TEAD1 Missense_Mutation p.G212S 0.24 tolerated(0.1) benign(0.15) TCGA-ZR-A9CJ-01 11 17629884 17629884 C T OTOG Missense_Mutation p.R1412C 0.28 possibly_damaging(0.816) TCGA-ZR-A9CJ-01 11 25103911 25103911 C T LUZP2 3'Flank 0.14 TCGA-ZR-A9CJ-01 11 35273495 35273495 A G SLC1A2 3'UTR 0.30 TCGA-ZR-A9CJ-01 11 4967768 4967768 T G OR51A4 Missense_Mutation p.K188T 0.21 deleterious(0.01) probably_damaging(0.987) TCGA-ZR-A9CJ-01 11 5475079 5475079 G A OR51I2 Missense_Mutation p.D121N 0.05 deleterious(0) probably_damaging(0.998) TCGA-ZR-A9CJ-01 11 55419138 55419138 T A OR4S2 Silent p.T253T 0.21 TCGA-ZR-A9CJ-01 11 55861318 55861318 G A OR8I2 Missense_Mutation p.D179N 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-ZR-A9CJ-01 11 5799194 5799194 G T OR52N5 Missense_Mutation p.S224Y 0.71 tolerated(0.05) possibly_damaging(0.786) TCGA-ZR-A9CJ-01 11 6231192 6231192 G A C11orf42 Missense_Mutation p.R62H 0.14 deleterious(0.03) probably_damaging(0.975) TCGA-ZR-A9CJ-01 11 62444043 62444043 G A UBXN1 3'UTR 0.27 TCGA-ZR-A9CJ-01 11 6567757 6567757 G A DNHD1 Missense_Mutation p.R1863H 0.12 benign(0.011) TCGA-ZR-A9CJ-01 11 68315547 68315547 T C PPP6R3 Silent p.L143L 0.21 TCGA-ZR-A9CJ-01 11 72552577 72552577 C T FCHSD2 Missense_Mutation p.D660N 0.25 tolerated(0.27) benign(0.011) TCGA-ZR-A9CJ-01 11 73686625 73686625 G T UCP2 Nonsense_Mutation p.Y242* 0.27 TCGA-ZR-A9CJ-01 11 83166199 83166199 A G DLG2 3'Flank 0.22 TCGA-ZR-A9CJ-01 11 89443868 89443868 A G TRIM77 Silent p.E134E 0.07 TCGA-ZR-A9CJ-01 12 101598288 101598288 A G SLC5A8 Missense_Mutation p.I136T 0.21 deleterious(0.02) possibly_damaging(0.794) TCGA-ZR-A9CJ-01 12 101750779 101750779 G A UTP20 Silent p.A1870A 0.16 TCGA-ZR-A9CJ-01 12 120578793 120578793 T G GCN1L1 Missense_Mutation p.K1955T 0.11 probably_damaging(0.999) TCGA-ZR-A9CJ-01 12 123187350 123187350 G A HCAR2 Missense_Mutation p.H161Y 0.26 tolerated(1) benign(0.208) TCGA-ZR-A9CJ-01 12 123907611 123907613 CTC - RILPL2 In_Frame_Del p.E195del 0.12 TCGA-ZR-A9CJ-01 12 124497178 124497178 A C ZNF664 Silent p.R163R 0.18 TCGA-ZR-A9CJ-01 12 1937326 1937326 G T LRTM2 Silent p.P4P 0.29 TCGA-ZR-A9CJ-01 12 27179452 27179453 - CTAACC MED21 In_Frame_Ins p.N49_P50dup 0.20 TCGA-ZR-A9CJ-01 12 29628122 29628122 G A OVCH1 Missense_Mutation p.A491V 0.18 deleterious(0.03) possibly_damaging(0.83) TCGA-ZR-A9CJ-01 12 69103086 69103086 T A NUP107 Missense_Mutation p.S266R 0.16 deleterious(0.01) possibly_damaging(0.649) TCGA-ZR-A9CJ-01 12 8211653 8211653 G A C3AR1 Nonsense_Mutation p.R377* 0.30 TCGA-ZR-A9CJ-01 12 8687172 8687172 C T CLEC4E 3'UTR 0.30 TCGA-ZR-A9CJ-01 13 100638600 100638600 A G ZIC2 3'UTR 0.26 TCGA-ZR-A9CJ-01 13 23908710 23908710 A T SACS Nonsense_Mutation p.L3102* 0.34 TCGA-ZR-A9CJ-01 13 27256996 27256996 T G WASF3 Silent p.S412S 0.37 TCGA-ZR-A9CJ-01 13 38154786 38154786 T A POSTN Nonsense_Mutation p.R481* 0.14 TCGA-ZR-A9CJ-01 13 67802557 67802557 A T PCDH9 Missense_Mutation p.F6I 0.39 tolerated(0.39) benign(0.063) TCGA-ZR-A9CJ-01 13 84454326 84454326 G A SLITRK1 Silent p.S439S 0.16 TCGA-ZR-A9CJ-01 13 94482417 94482417 A G GPC6 Silent p.R110R 0.29 TCGA-ZR-A9CJ-01 14 105677503 105677517 TCCTCCTCGTCAGGC - BRF1 In_Frame_Del p.E646_E650del 0.23 TCGA-ZR-A9CJ-01 14 106054142 106054142 A G IGHA2 Missense_Mutation p.L126S 0.10 deleterious(0) possibly_damaging(0.778) TCGA-ZR-A9CJ-01 14 22362720 22362720 C A TRAV8-4 5'UTR 0.22 TCGA-ZR-A9CJ-01 14 23586975 23586975 C T CEBPE Silent p.P189P 0.32 TCGA-ZR-A9CJ-01 14 26917131 26917131 G C NOVA1 3'UTR 0.27 TCGA-ZR-A9CJ-01 14 73969644 73969644 G A HEATR4 Missense_Mutation p.A687V 0.24 deleterious(0.03) possibly_damaging(0.878) TCGA-ZR-A9CJ-01 15 50264849 50264849 G A ATP8B4 Silent p.S391S 0.15 TCGA-ZR-A9CJ-01 15 57555400 57555401 - T TCF12 Frame_Shift_Ins p.S559Ifs*3 0.08 TCGA-ZR-A9CJ-01 15 74426478 74426478 C T ISLR2 Silent p.N461N 0.24 TCGA-ZR-A9CJ-01 15 84707171 84707171 A C ADAMTSL3 3'UTR 0.40 TCGA-ZR-A9CJ-01 15 85346694 85346694 C T ZNF592 3'UTR 0.07 TCGA-ZR-A9CJ-01 15 87089267 87089267 A C AGBL1 Missense_Mutation p.K861T 0.07 deleterious(0.02) possibly_damaging(0.868) TCGA-ZR-A9CJ-01 16 21771973 21771973 G T OTOA 3'UTR 0.40 TCGA-ZR-A9CJ-01 16 2758156 2758156 C T KCTD5 3'UTR 0.08 TCGA-ZR-A9CJ-01 16 48149422 48149422 C T ABCC12 Silent p.S631S 0.38 TCGA-ZR-A9CJ-01 16 56871629 56871629 T G NUP93 Missense_Mutation p.I670S 0.32 deleterious(0) possibly_damaging(0.895) TCGA-ZR-A9CJ-01 16 64984684 64984684 A T CDH11 Missense_Mutation p.I627N 0.21 deleterious(0) probably_damaging(0.996) TCGA-ZR-A9CJ-01 16 69201121 69201121 T C CIRH1A Intron 0.38 TCGA-ZR-A9CJ-01 16 7382815 7382815 T G RBFOX1 5'UTR 0.45 TCGA-ZR-A9CJ-01 16 89777219 89777219 G A VPS9D1 Missense_Mutation p.R345W 0.48 tolerated(0.07) benign(0.001) TCGA-ZR-A9CJ-01 17 1382889 1382889 G A MYO1C Silent p.T339T 0.33 TCGA-ZR-A9CJ-01 17 1840006 1840006 G A RTN4RL1 Silent p.A370A 0.56 TCGA-ZR-A9CJ-01 17 27975312 27975312 G A SSH2 Missense_Mutation p.S399L 0.11 deleterious(0) probably_damaging(1) TCGA-ZR-A9CJ-01 17 73947651 73947651 C A ACOX1 Nonsense_Mutation p.E318* 0.30 TCGA-ZR-A9CJ-01 17 7578415 7578415 A T TP53 Missense_Mutation p.V172D 0.59 deleterious(0) probably_damaging(0.994) TCGA-ZR-A9CJ-01 17 79165000 79165000 C T AZI1 Missense_Mutation p.E920K 0.39 deleterious(0.02) probably_damaging(0.95) TCGA-ZR-A9CJ-01 17 79479159 79479160 - CATGA ACTG1 Frame_Shift_Ins p.V45Sfs*23 0.27 TCGA-ZR-A9CJ-01 18 34340663 34340663 G A FHOD3 Silent p.K1331K 0.16 TCGA-ZR-A9CJ-01 18 6882161 6882161 A C ARHGAP28 Missense_Mutation p.K280T 0.11 deleterious(0.02) possibly_damaging(0.868) TCGA-ZR-A9CJ-01 18 7036038 7036038 G A LAMA1 Missense_Mutation p.P596L 0.19 deleterious(0.05) benign(0.26) TCGA-ZR-A9CJ-01 19 1854587 1854587 G A KLF16 Silent p.P210P 0.19 TCGA-ZR-A9CJ-01 19 37368648 37368648 A G ZNF345 Missense_Mutation p.R306G 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-ZR-A9CJ-01 19 4493736 4493736 G A HDGFRP2 Missense_Mutation p.D239N 0.16 deleterious(0.01) unknown(0) TCGA-ZR-A9CJ-01 19 58563975 58563975 C T ZSCAN1 Missense_Mutation p.P195S 0.37 tolerated(0.72) benign(0.002) TCGA-ZR-A9CJ-01 19 9090016 9090016 G A MUC16 Missense_Mutation p.T600I 0.23 unknown(0) TCGA-ZR-A9CJ-01 19 9296619 9296619 C A OR7D2 Missense_Mutation p.H54Q 0.21 deleterious_low_confidence(0.02) benign(0.103) TCGA-ZR-A9CJ-01 1 101190445 101190445 A C VCAM1 Missense_Mutation p.Q309H 0.11 deleterious(0.03) possibly_damaging(0.687) TCGA-ZR-A9CJ-01 1 10211432 10211432 G T UBE4B Missense_Mutation p.M913I 0.40 deleterious(0.02) benign(0.008) TCGA-ZR-A9CJ-01 1 110086315 110086325 TACTTGTGGTC - GPR61 Frame_Shift_Del p.V226Qfs*143 0.16 TCGA-ZR-A9CJ-01 1 110996633 110996633 C T PROK1 Silent p.S41S 0.23 TCGA-ZR-A9CJ-01 1 115829298 115829298 A C NGF Missense_Mutation p.L40R 0.27 tolerated(0.56) possibly_damaging(0.736) TCGA-ZR-A9CJ-01 1 12943147 12943147 T C PRAMEF4 Silent p.Q23Q 0.16 TCGA-ZR-A9CJ-01 1 152327323 152327323 C A FLG2 Missense_Mutation p.G980V 0.30 unknown(0) TCGA-ZR-A9CJ-01 1 154544295 154544295 G A CHRNB2 Silent p.A332A 0.17 TCGA-ZR-A9CJ-01 1 156084801 156084803 AGA - LMNA In_Frame_Del p.K32del 0.15 TCGA-ZR-A9CJ-01 1 157508906 157508906 G C FCRL5 Missense_Mutation p.R458G 0.16 deleterious(0.01) possibly_damaging(0.908) TCGA-ZR-A9CJ-01 1 158297913 158297913 T C CD1B 3'UTR 0.09 TCGA-ZR-A9CJ-01 1 158532850 158532850 G T OR6P1 Missense_Mutation p.S182Y 0.32 deleterious(0) probably_damaging(0.998) TCGA-ZR-A9CJ-01 1 158532991 158532991 A G OR6P1 Missense_Mutation p.L135P 0.35 deleterious(0) possibly_damaging(0.792) TCGA-ZR-A9CJ-01 1 158592923 158592923 G A SPTA1 Silent p.D1990D 0.33 TCGA-ZR-A9CJ-01 1 16583183 16583183 A G FBXO42 Missense_Mutation p.W192R 0.11 deleterious(0.02) probably_damaging(0.982) TCGA-ZR-A9CJ-01 1 16583184 16583184 G A FBXO42 Silent p.G191G 0.13 TCGA-ZR-A9CJ-01 1 181767512 181767512 G A CACNA1E Missense_Mutation p.V2162I 0.35 deleterious(0.02) possibly_damaging(0.796) TCGA-ZR-A9CJ-01 1 204978801 204978801 G A NFASC Missense_Mutation p.G1136S 0.19 deleterious(0) unknown(0) TCGA-ZR-A9CJ-01 1 216040378 216040378 G A USH2A Missense_Mutation p.T2939I 0.15 probably_damaging(0.967) TCGA-ZR-A9CJ-01 1 236849872 236849885 CGCCCGCCGCCCGC - ACTN2 5'UTR 0.25 TCGA-ZR-A9CJ-01 1 23782377 23782389 GTTCTTGAAGAGC - ASAP3 Frame_Shift_Del p.L112* 0.31 TCGA-ZR-A9CJ-01 1 240072260 240072260 T G CHRM3 Silent p.T503T 0.16 TCGA-ZR-A9CJ-01 1 244217095 244217095 G A ZBTB18 Missense_Mutation p.E7K 0.20 tolerated_low_confidence(0.11) benign(0.01) TCGA-ZR-A9CJ-01 1 247921595 247921595 G T OR1C1 Silent p.T38T 0.23 TCGA-ZR-A9CJ-01 1 36805508 36805508 C T STK40 3'UTR 0.13 TCGA-ZR-A9CJ-01 1 42986899 42986899 C G CCDC30 Intron 0.48 TCGA-ZR-A9CJ-01 1 86430712 86430712 G C COL24A1 Missense_Mutation p.P833A 0.15 tolerated(0.06) possibly_damaging(0.792) TCGA-ZR-A9CJ-01 20 3782599 3782599 G A CDC25B Missense_Mutation p.R317Q 0.14 tolerated(0.15) possibly_damaging(0.6) TCGA-ZR-A9CJ-01 20 44533745 44533745 G A PLTP Missense_Mutation p.P240S 0.32 tolerated(0.39) benign(0.395) TCGA-ZR-A9CJ-01 20 57269565 57269565 C T NPEPL1 Missense_Mutation p.R142W 0.08 deleterious(0.02) possibly_damaging(0.821) TCGA-ZR-A9CJ-01 20 61510960 61510961 CT - DIDO1 Frame_Shift_Del p.E2116Afs*140 0.15 TCGA-ZR-A9CJ-01 21 10907027 10907027 T C TPTE Missense_Mutation p.K512E 0.10 deleterious(0) benign(0.232) TCGA-ZR-A9CJ-01 21 28212008 28212008 C T ADAMTS1 Silent p.A642A 0.27 TCGA-ZR-A9CJ-01 21 46902721 46902721 G A COL18A1 Missense_Mutation p.A743T 0.45 possibly_damaging(0.695) TCGA-ZR-A9CJ-01 22 18560843 18560843 G A PEX26 Intron 0.25 TCGA-ZR-A9CJ-01 22 19365551 19365551 G A HIRA Missense_Mutation p.S485L 0.19 tolerated(0.22) benign(0.006) TCGA-ZR-A9CJ-01 22 41572509 41572509 C T EP300 Missense_Mutation p.R1680C 0.26 probably_damaging(0.993) TCGA-ZR-A9CJ-01 22 46805032 46805032 C T CELSR1 Missense_Mutation p.G1696D 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-ZR-A9CJ-01 2 138434256 138434256 G T THSD7B 3'UTR 0.33 TCGA-ZR-A9CJ-01 2 170025142 170025142 C A LRP2 Nonsense_Mutation p.E3848* 0.17 TCGA-ZR-A9CJ-01 2 175462477 175462477 A T WIPF1 Intron 0.27 TCGA-ZR-A9CJ-01 2 178095854 178095854 C T NFE2L2 Missense_Mutation p.A493T 0.16 deleterious(0.01) possibly_damaging(0.841) TCGA-ZR-A9CJ-01 2 179469601 179469601 A C TTN Missense_Mutation p.L18072R 0.14 TCGA-ZR-A9CJ-01 2 179594880 179594880 T A TTN Missense_Mutation p.I6083F 0.12 TCGA-ZR-A9CJ-01 2 200173631 200173631 T G SATB2 Missense_Mutation p.N531T 0.09 deleterious(0) probably_damaging(0.995) TCGA-ZR-A9CJ-01 2 208795679 208795679 C A PLEKHM3 Silent p.R619R 0.23 TCGA-ZR-A9CJ-01 2 214354802 214354802 T C SPAG16 Missense_Mutation p.L353P 0.26 deleterious(0.02) probably_damaging(0.982) TCGA-ZR-A9CJ-01 2 215645798 215645798 G T BARD1 Missense_Mutation p.T267K 0.22 tolerated(0.76) benign(0.011) TCGA-ZR-A9CJ-01 2 46607771 46607771 G A EPAS1 Missense_Mutation p.V654I 0.13 tolerated(0.37) benign(0.018) TCGA-ZR-A9CJ-01 2 5838268 5838268 C T SOX11 3'UTR 0.16 TCGA-ZR-A9CJ-01 2 73487918 73487918 G A FBXO41 Missense_Mutation p.A747V 0.11 tolerated(0.15) probably_damaging(0.99) TCGA-ZR-A9CJ-01 2 89092006 89092006 C T ANKRD36BP2 RNA 0.26 TCGA-ZR-A9CJ-01 2 96851900 96851900 A - STARD7 3'UTR 0.29 TCGA-ZR-A9CJ-01 3 113753830 113753830 C T KIAA1407 Missense_Mutation p.V254M 0.17 deleterious(0) probably_damaging(0.955) TCGA-ZR-A9CJ-01 3 32032151 32032151 G A ZNF860 Missense_Mutation p.R527H 0.43 tolerated(0.51) possibly_damaging(0.647) TCGA-ZR-A9CJ-01 4 103451072 103451072 G C NFKB1 Splice_Site p.X40_splice 0.12 TCGA-ZR-A9CJ-01 4 122258023 122258023 C A QRFPR Missense_Mutation p.G167V 0.25 tolerated(0.24) benign(0.026) TCGA-ZR-A9CJ-01 4 126336053 126336053 T C FAT4 Silent p.L1979L 0.14 TCGA-ZR-A9CJ-01 4 13601004 13601004 C G BOD1L1 Missense_Mutation p.G2507A 0.11 benign(0.173) TCGA-ZR-A9CJ-01 4 156764860 156764860 G A ASIC5 Silent p.H278H 0.13 TCGA-ZR-A9CJ-01 4 166981258 166981258 A G TLL1 Missense_Mutation p.K642R 0.24 deleterious(0.01) possibly_damaging(0.632) TCGA-ZR-A9CJ-01 4 167022782 167022782 A G TLL1 3'UTR 0.18 TCGA-ZR-A9CJ-01 4 37445228 37445228 C T KIAA1239 Missense_Mutation p.R540W 0.32 deleterious(0) probably_damaging(0.978) TCGA-ZR-A9CJ-01 4 41983736 41983736 G C DCAF4L1 5'UTR 0.21 TCGA-ZR-A9CJ-01 4 99960579 99960579 C T METAP1 Missense_Mutation p.S132L 0.29 deleterious(0.05) benign(0.024) TCGA-ZR-A9CJ-01 5 10971952 10971952 T - CTNND2 3'UTR 0.26 TCGA-ZR-A9CJ-01 5 128363000 128363000 G T SLC27A6 Missense_Mutation p.W477L 0.35 tolerated(0.37) benign(0.013) TCGA-ZR-A9CJ-01 5 153434261 153434261 C T MFAP3 3'UTR 0.08 TCGA-ZR-A9CJ-01 5 16091158 16091158 T G MARCH11 Missense_Mutation p.K242N 0.27 deleterious(0.01) probably_damaging(0.933) TCGA-ZR-A9CJ-01 5 177658468 177658468 C T PHYKPL Missense_Mutation p.G39E 0.39 deleterious(0.02) probably_damaging(0.952) TCGA-ZR-A9CJ-01 5 40999877 40999877 T G MROH2B Missense_Mutation p.K1496T 0.26 deleterious(0.03) benign(0.039) TCGA-ZR-A9CJ-01 5 45267297 45267297 A C HCN1 Missense_Mutation p.C559W 0.25 deleterious(0) probably_damaging(0.999) TCGA-ZR-A9CJ-01 5 63510181 63510181 C T RNF180 Missense_Mutation p.P343L 0.48 tolerated(0.36) benign(0) TCGA-ZR-A9CJ-01 5 76264840 76264840 G A CRHBP 3'UTR 0.11 TCGA-ZR-A9CJ-01 6 117662759 117662759 C T ROS1 Missense_Mutation p.R1569Q 0.27 tolerated(0.32) benign(0.001) TCGA-ZR-A9CJ-01 6 147704078 147704078 G C STXBP5 Missense_Mutation p.E1120Q 0.34 deleterious(0) probably_damaging(0.91) TCGA-ZR-A9CJ-01 6 147704132 147704132 G A STXBP5 Missense_Mutation p.E1138K 0.37 tolerated(0.08) benign(0.196) TCGA-ZR-A9CJ-01 6 27835245 27835245 C T HIST1H1B Silent p.K21K 0.36 TCGA-ZR-A9CJ-01 6 31600116 31600116 G A PRRC2A Silent p.A1222A 0.04 TCGA-ZR-A9CJ-01 6 32136858 32136858 C T AGPAT1 3'UTR 0.18 TCGA-ZR-A9CJ-01 6 348890 348890 G A DUSP22 Intron 0.21 TCGA-ZR-A9CJ-01 6 43190586 43190589 CAGA - CUL9 Frame_Shift_Del p.T2369Rfs*70 0.14 TCGA-ZR-A9CJ-01 6 656472 656472 C T HUS1B Missense_Mutation p.R158H 0.31 tolerated(0.14) benign(0) TCGA-ZR-A9CJ-01 6 80745072 80745072 C A TTK Missense_Mutation p.P621Q 0.11 deleterious(0) possibly_damaging(0.624) TCGA-ZR-A9CJ-01 7 137028442 137028442 C T PTN 5'UTR 0.33 TCGA-ZR-A9CJ-01 7 150070832 150070832 G A REPIN1 3'Flank 0.28 TCGA-ZR-A9CJ-01 7 150553895 150553895 G A AOC1 Missense_Mutation p.E113K 0.06 deleterious(0) probably_damaging(1) TCGA-ZR-A9CJ-01 7 20824506 20824506 C T SP8 Silent p.P310P 0.67 TCGA-ZR-A9CJ-01 7 2275007 2275007 T A FTSJ2 Missense_Mutation p.D164V 0.13 tolerated(0.12) benign(0.361) TCGA-ZR-A9CJ-01 7 37924817 37924817 A G NME8 Missense_Mutation p.R404G 0.28 tolerated(0.11) benign(0.002) TCGA-ZR-A9CJ-01 7 42000970 42000970 G C GLI3 3'UTR 0.18 TCGA-ZR-A9CJ-01 7 43447182 43447182 A T HECW1 Missense_Mutation p.K218M 0.43 deleterious(0) probably_damaging(1) TCGA-ZR-A9CJ-01 7 44048376 44048376 C T SPDYE1 3'UTR 0.34 TCGA-ZR-A9CJ-01 7 6202835 6202835 G A CYTH3 3'UTR 0.24 TCGA-ZR-A9CJ-01 7 93540126 93540126 A C GNGT1 Silent p.R41R 0.23 TCGA-ZR-A9CJ-01 8 139164816 139164816 T G FAM135B Missense_Mutation p.K634N 0.29 tolerated(0.06) possibly_damaging(0.701) TCGA-ZR-A9CJ-01 8 18729696 18729696 C T PSD3 Silent p.Q226Q 0.21 TCGA-ZR-A9CJ-01 8 35401933 35401933 A T UNC5D Intron 0.19 TCGA-ZR-A9CJ-01 8 53852661 53852661 C T NPBWR1 Missense_Mutation p.A65V 0.15 tolerated(0.42) possibly_damaging(0.662) TCGA-ZR-A9CJ-01 8 57358362 57358362 G A PENK Intron 0.20 TCGA-ZR-A9CJ-01 8 72964956 72964956 G A TRPA1 Silent p.A563A 0.30 TCGA-ZR-A9CJ-01 8 88365898 88365898 T G CNBD1 Missense_Mutation p.L396R 0.33 deleterious(0) probably_damaging(0.999) TCGA-ZR-A9CJ-01 9 111665946 111665946 T A IKBKAP Silent p.S549S 0.42 TCGA-ZR-A9CJ-01 9 131765654 131765654 C A NUP188 Missense_Mutation p.T1452N 0.11 deleterious(0) probably_damaging(0.997) TCGA-ZR-A9CJ-01 9 139650580 139650580 G A LCN8 Intron 0.09 TCGA-ZR-A9CJ-01 9 15920397 15920397 C T CCDC171 Missense_Mutation p.R1244C 0.47 deleterious(0) probably_damaging(0.999) TCGA-ZR-A9CJ-01 9 27169601 27169601 C A TEK Nonsense_Mutation p.S201* 0.16 TCGA-ZR-A9CJ-01 X 102337233 102337233 C T NXF3 Silent p.A280A 0.24 TCGA-ZR-A9CJ-01 X 135738537 135738537 G A CD40LG Silent p.A123A 0.26 TCGA-ZR-A9CJ-01 X 14026891 14026891 G A GEMIN8 3'UTR 0.70 TCGA-ZR-A9CJ-01 X 148039901 148039901 A C AFF2 Missense_Mutation p.K868T 0.55 deleterious(0.05) probably_damaging(0.998) TCGA-ZR-A9CJ-01 X 149639339 149639339 G T MAMLD1 Missense_Mutation p.Q473H 0.36 deleterious(0.03) benign(0.305) TCGA-ZR-A9CJ-01 X 34148795 34148795 G A FAM47A Missense_Mutation p.P534L 0.12 deleterious(0.05) benign(0) TCGA-ZR-A9CJ-01 X 41057806 41057806 C T USP9X Missense_Mutation p.P1469L 0.44 deleterious(0) probably_damaging(0.991) TCGA-ZR-A9CJ-01 X 50052652 50052652 C T CCNB3 Missense_Mutation p.H495Y 0.13 tolerated(0.09) benign(0.231) TCGA-ZR-A9CJ-01 X 78011921 78011959 TTAGCACAAGAATATTTTTAGCCTAACATTATTAATAAG - LPAR4 3'UTR 0.43