sample chr start end reference alt gene effect Amino_Acid_Change DNA_VAF SIFT PolyPhen TCGA-02-0003-01 10 123810032 123810032 C T TACC2 Missense_Mutation p.T38M 0.88 benign(0.335) TCGA-02-0003-01 10 133967449 133967449 C T JAKMIP3 Silent p.D723D 0.79 TCGA-02-0003-01 11 124489539 124489539 G A PANX3 Missense_Mutation p.R296Q 0.41 tolerated(0.37) benign(0.001) TCGA-02-0003-01 11 47380512 47380512 G T SPI1 Missense_Mutation p.P127T 0.50 tolerated(0.08) benign(0.093) TCGA-02-0003-01 11 89868837 89868837 C T NAALAD2 Missense_Mutation p.R65C 0.51 deleterious(0.01) benign(0.034) TCGA-02-0003-01 11 92570936 92570936 G A FAT3 Silent p.P3444P 0.40 TCGA-02-0003-01 12 107371855 107371855 A G MTERFD3 Missense_Mutation p.L213S 0.41 deleterious(0) probably_damaging(1) TCGA-02-0003-01 12 108012011 108012011 G A BTBD11 Missense_Mutation p.E770K 0.36 deleterious(0) probably_damaging(0.994) TCGA-02-0003-01 12 117768962 117768962 C A NOS1 5'Flank 0.47 TCGA-02-0003-01 12 7980269 7980269 C T SLC2A14 Missense_Mutation p.R252Q 0.42 tolerated(0.13) benign(0.049) TCGA-02-0003-01 12 8082458 8082458 C T SLC2A3 Missense_Mutation p.R228Q 0.12 tolerated(0.14) benign(0.014) TCGA-02-0003-01 14 100363606 100363606 G A EML1 Missense_Mutation p.A287T 0.51 tolerated(0.27) benign(0.001) TCGA-02-0003-01 14 23858709 23858709 G T MYH6 Silent p.R1291R 0.44 TCGA-02-0003-01 14 33290999 33290999 A G AKAP6 Missense_Mutation p.D1327G 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-02-0003-01 15 53998200 53998200 A T WDR72 Silent p.S342S 0.87 TCGA-02-0003-01 16 1412529 1412529 C T GNPTG Silent p.T201T 0.51 TCGA-02-0003-01 16 1815961 1815961 C T MAPK8IP3 Missense_Mutation p.A815V 0.38 tolerated(0.05) benign(0.409) TCGA-02-0003-01 17 3366028 3366028 G A SPATA22 Missense_Mutation p.A69V 0.36 tolerated(0.13) benign(0.392) TCGA-02-0003-01 17 46607715 46607715 C A HOXB1 Missense_Mutation p.K184N 0.45 deleterious(0) probably_damaging(0.997) TCGA-02-0003-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.43 deleterious(0) probably_damaging(0.997) TCGA-02-0003-01 17 7578396 7578396 G T TP53 Missense_Mutation p.H178Q 0.38 deleterious(0) probably_damaging(1) TCGA-02-0003-01 19 10789305 10789305 C T ILF3 Silent p.N192N 0.39 TCGA-02-0003-01 19 14046616 14046616 G A PODNL1 Missense_Mutation p.R145W 0.35 deleterious(0.01) probably_damaging(0.952) TCGA-02-0003-01 19 56538455 56538455 G A NLRP5 Missense_Mutation p.G286R 0.71 deleterious(0.03) probably_damaging(1) TCGA-02-0003-01 19 56934399 56934399 T G ZNF583 Missense_Mutation p.S124R 0.50 tolerated(0.32) benign(0.002) TCGA-02-0003-01 1 10690182 10690182 G A PEX14 3'UTR 0.60 TCGA-02-0003-01 1 154148652 154148652 G A TPM3 Missense_Mutation p.R106C 0.46 deleterious(0) probably_damaging(1) TCGA-02-0003-01 1 161206281 161206281 C T NR1I3 Silent p.A25A 0.30 TCGA-02-0003-01 20 2413386 2413386 T C TGM6 3'UTR 0.20 TCGA-02-0003-01 20 51872260 51872260 C T TSHZ2 Missense_Mutation p.R755C 0.40 tolerated(0.06) benign(0.004) TCGA-02-0003-01 22 40417570 40417570 C T FAM83F Silent p.G352G 0.55 TCGA-02-0003-01 22 46656782 46656782 C A PKDREJ Missense_Mutation p.S813I 0.30 tolerated(0.1) benign(0.049) TCGA-02-0003-01 2 198950756 198950756 G A PLCL1 Missense_Mutation p.V839I 0.50 deleterious(0.01) benign(0.069) TCGA-02-0003-01 2 219255987 219255987 G A SLC11A1 Missense_Mutation p.V341M 0.45 deleterious(0.03) possibly_damaging(0.771) TCGA-02-0003-01 2 220422920 220422920 T C OBSL1 Missense_Mutation p.N1163S 0.33 tolerated(0.23) benign(0.019) TCGA-02-0003-01 2 55439915 55439915 C A CLHC1 Silent p.S131S 0.49 TCGA-02-0003-01 3 137796433 137796433 C T DZIP1L Missense_Mutation p.A444T 0.48 tolerated(0.15) possibly_damaging(0.637) TCGA-02-0003-01 3 138184241 138184241 G A ESYT3 Missense_Mutation p.D383N 0.33 tolerated(0.06) benign(0.151) TCGA-02-0003-01 3 45077083 45077083 C T CLEC3B Silent p.H92H 0.44 TCGA-02-0003-01 3 50387203 50387203 G A NPRL2 Missense_Mutation p.R78C 0.27 deleterious(0) probably_damaging(1) TCGA-02-0003-01 4 25396471 25396471 G T ANAPC4 Missense_Mutation p.Q335H 0.37 tolerated(0.43) benign(0.288) TCGA-02-0003-01 4 70156391 70156391 T C UGT2B28 Missense_Mutation p.V391A 0.12 deleterious(0) probably_damaging(0.977) TCGA-02-0003-01 5 13727709 13727709 C T DNAH5 Silent p.E3980E 0.38 TCGA-02-0003-01 5 175110351 175110351 G A HRH2 Missense_Mutation p.V39I 0.42 deleterious(0) probably_damaging(0.999) TCGA-02-0003-01 5 67589138 67589138 G A PIK3R1 Missense_Mutation p.G376R 0.26 deleterious(0) probably_damaging(1) TCGA-02-0003-01 5 79284349 79284349 A T MTX3 Missense_Mutation p.L86Q 0.45 deleterious(0.02) probably_damaging(0.989) TCGA-02-0003-01 5 96098123 96098123 C T ERAP1 3'UTR 0.45 TCGA-02-0003-01 6 146269445 146269445 C T SHPRH Missense_Mutation p.E342K 0.74 tolerated(0.18) possibly_damaging(0.472) TCGA-02-0003-01 6 24556864 24556864 C T KIAA0319 Missense_Mutation p.R943H 0.33 tolerated(0.47) benign(0.066) TCGA-02-0003-01 6 33170112 33170112 T C SLC39A7 Missense_Mutation p.F236S 0.46 tolerated(0.09) benign(0.098) TCGA-02-0003-01 6 94120845 94120845 C T EPHA7 Missense_Mutation p.R69Q 0.44 deleterious(0.05) probably_damaging(0.986) TCGA-02-0003-01 7 100677039 100677039 C T MUC17 Missense_Mutation p.S781F 0.27 unknown(0) TCGA-02-0003-01 7 144015574 144015574 C T OR2A1 Silent p.Y119Y 0.15 TCGA-02-0003-01 7 144071850 144071850 G A ARHGEF5 Missense_Mutation p.R1389H 0.19 deleterious(0) probably_damaging(0.999) TCGA-02-0003-01 7 37251095 37251095 G C ELMO1 Missense_Mutation p.R328G 0.38 deleterious(0.01) probably_damaging(0.995) TCGA-02-0003-01 7 55233109 55233109 G A EGFR Missense_Mutation p.C620Y 0.44 deleterious(0) possibly_damaging(0.788) TCGA-02-0003-01 7 70255710 70255710 G A AUTS2 Missense_Mutation p.V1170M 0.29 tolerated(0.58) benign(0.17) TCGA-02-0003-01 8 43147808 43147808 G A POTEA RNA 0.42 TCGA-02-0003-01 9 2811564 2811564 G A KIAA0020 Missense_Mutation p.R478C 0.08 deleterious(0.03) possibly_damaging(0.803) TCGA-02-0003-01 9 86482718 86482718 G A KIF27 Missense_Mutation p.R939C 0.33 deleterious(0) probably_damaging(0.931) TCGA-02-0003-01 X 117035907 117035907 T C KLHL13 Missense_Mutation p.T460A 0.11 deleterious(0.01) possibly_damaging(0.644) TCGA-02-0033-01 10 123298220 123298220 G T FGFR2 Missense_Mutation p.Q212K 0.34 tolerated(0.13) probably_damaging(0.989) TCGA-02-0033-01 10 1405297 1405297 C T ADARB2 Missense_Mutation p.A335T 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-02-0033-01 11 63141216 63141216 C T SLC22A9 Missense_Mutation p.R203C 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-02-0033-01 11 76506917 76506917 T G TSKU Missense_Mutation p.L86W 0.18 deleterious(0) probably_damaging(1) TCGA-02-0033-01 12 104325340 104325340 G T HSP90B1 Missense_Mutation p.V31L 0.12 tolerated(0.07) benign(0.012) TCGA-02-0033-01 12 121176680 121176680 G A ACADS Missense_Mutation p.A331T 0.17 deleterious(0) probably_damaging(1) TCGA-02-0033-01 12 122437781 122437781 G A WDR66 Missense_Mutation p.G1056S 0.16 deleterious(0) possibly_damaging(0.663) TCGA-02-0033-01 12 12814147 12814155 ATTTGGTGG - GPR19 In_Frame_Del p.P410_N412del 0.18 TCGA-02-0033-01 12 56078847 56078847 C T ITGA7 Missense_Mutation p.A1141T 0.25 deleterious_low_confidence(0) benign(0.037) TCGA-02-0033-01 12 56639298 56639298 G A ANKRD52 Missense_Mutation p.T756M 0.12 deleterious(0) probably_damaging(0.996) TCGA-02-0033-01 13 43180986 43180986 C T TNFSF11 Missense_Mutation p.P296S 0.28 tolerated(0.23) possibly_damaging(0.636) TCGA-02-0033-01 13 49033967 49033967 C T RB1 Nonsense_Mutation p.Q702* 0.23 TCGA-02-0033-01 15 73614906 73614906 C T HCN4 Silent p.G1176G 0.17 TCGA-02-0033-01 16 20439127 20439127 G A ACSM5 Silent p.P313P 0.12 TCGA-02-0033-01 16 31409190 31409190 G A ITGAD Silent p.S129S 0.18 TCGA-02-0033-01 16 57007243 57007243 G A CETP Missense_Mutation p.G251S 0.19 deleterious(0.03) probably_damaging(1) TCGA-02-0033-01 17 29586049 29586049 G A NF1 Splice_Site p.X1445_splice 0.27 TCGA-02-0033-01 17 56382781 56382781 C A BZRAP1 Silent p.V1800V 0.27 TCGA-02-0033-01 17 73729694 73729694 C T ITGB4 Silent p.Y526Y 0.23 TCGA-02-0033-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.26 deleterious(0) probably_damaging(1) TCGA-02-0033-01 19 22940645 22940645 A T ZNF99 Missense_Mutation p.F689Y 0.22 tolerated(1) possibly_damaging(0.898) TCGA-02-0033-01 19 34819037 34819037 A G KIAA0355 Missense_Mutation p.D362G 0.20 deleterious(0.01) possibly_damaging(0.765) TCGA-02-0033-01 19 38713080 38713080 G A DPF1 Missense_Mutation p.T99M 0.14 deleterious(0) probably_damaging(0.987) TCGA-02-0033-01 1 225155425 225155425 C A DNAH14 Intron 0.17 TCGA-02-0033-01 1 226426780 226426780 G A LIN9 Silent p.P395P 0.18 TCGA-02-0033-01 1 247581984 247581984 A T NLRP3 5'UTR 0.50 TCGA-02-0033-01 1 86047880 86047881 - TGG CYR61 In_Frame_Ins p.L183_G184insV 0.21 TCGA-02-0033-01 20 60581775 60581775 C T TAF4 Missense_Mutation p.A672T 0.25 probably_damaging(0.995) TCGA-02-0033-01 21 31964779 31964779 C A KRTAP6-3 5'UTR 0.17 TCGA-02-0033-01 2 227662172 227662172 G A IRS1 Missense_Mutation p.S428L 0.18 tolerated(1) probably_damaging(0.978) TCGA-02-0033-01 3 111887770 111887770 C T SLC9C1 Missense_Mutation p.R1064Q 0.21 tolerated(0.18) benign(0.164) TCGA-02-0033-01 3 148804115 148804115 C T HLTF Nonsense_Mutation p.W3* 0.17 TCGA-02-0033-01 3 178936082 178936082 G A PIK3CA Missense_Mutation p.E542K 0.15 deleterious(0.04) probably_damaging(0.96) TCGA-02-0033-01 5 140167909 140167909 G A PCDHA1 Silent p.A678A 0.23 TCGA-02-0033-01 5 175110363 175110363 G A HRH2 Missense_Mutation p.V43M 0.19 deleterious(0) probably_damaging(1) TCGA-02-0033-01 7 148703125 148703125 G A PDIA4 Silent p.A384A 0.15 TCGA-02-0033-01 7 80546078 80546078 C A SEMA3C Missense_Mutation p.C7F 0.12 tolerated(0.77) benign(0) TCGA-02-0033-01 8 17072848 17072848 A G ZDHHC2 Silent p.K351K 0.26 TCGA-02-0033-01 8 28321322 28321322 G T FBXO16 Missense_Mutation p.T50K 0.22 deleterious(0) possibly_damaging(0.641) TCGA-02-0033-01 9 139564727 139564727 C T EGFL7 Silent p.D172D 0.15 TCGA-02-0033-01 9 34401054 34401054 C T FAM219A Missense_Mutation p.D156N 0.19 deleterious(0) probably_damaging(0.998) TCGA-02-0047-01 10 25886887 25886887 G T GPR158 Missense_Mutation p.D778Y 0.07 tolerated(0.3) benign(0.374) TCGA-02-0047-01 10 25886905 25886905 G C GPR158 Missense_Mutation p.G784R 0.08 tolerated(0.05) benign(0.004) TCGA-02-0047-01 10 26446423 26446423 T A MYO3A Missense_Mutation p.L993H 0.16 tolerated(0.05) benign(0.416) TCGA-02-0047-01 11 108380635 108380635 G A EXPH5 Missense_Mutation p.R1867C 0.07 tolerated(0.11) possibly_damaging(0.72) TCGA-02-0047-01 11 118626197 118626197 C T DDX6 Missense_Mutation p.G397D 0.31 deleterious(0) probably_damaging(0.981) TCGA-02-0047-01 11 12946585 12946585 G A TEAD1 Missense_Mutation p.V334I 0.07 deleterious(0.04) possibly_damaging(0.802) TCGA-02-0047-01 11 4609074 4609074 C A OR52I2 Missense_Mutation p.D344E 0.07 tolerated(0.23) benign(0.002) TCGA-02-0047-01 11 56237516 56237516 G A OR5M3 Missense_Mutation p.T153M 0.39 tolerated(0.25) benign(0.042) TCGA-02-0047-01 11 65303487 65303487 C T SCYL1 Missense_Mutation p.R484W 0.39 deleterious(0) probably_damaging(0.999) TCGA-02-0047-01 11 92568240 92568240 C T FAT3 Missense_Mutation p.S3359F 0.09 benign(0.018) TCGA-02-0047-01 12 12274335 12274335 G A LRP6 Missense_Mutation p.R1523W 0.04 deleterious(0.01) probably_damaging(0.995) TCGA-02-0047-01 12 662979 662979 G A B4GALNT3 Silent p.P630P 0.35 TCGA-02-0047-01 12 7294683 7294683 G A CLSTN3 Silent p.E496E 0.45 TCGA-02-0047-01 12 8926145 8926162 CTGGCCGGCTCACCCGGC - RIMKLB In_Frame_Del p.S309_R315delinsC 0.44 TCGA-02-0047-01 13 20041405 20041405 A C TPTE2 Missense_Mutation p.Y158D 0.32 deleterious(0.01) possibly_damaging(0.568) TCGA-02-0047-01 13 25671552 25671552 G A PABPC3 Missense_Mutation p.A406T 0.39 tolerated(0.27) benign(0.064) TCGA-02-0047-01 13 39586362 39586362 G A PROSER1 Missense_Mutation p.S857F 0.05 deleterious(0) probably_damaging(0.997) TCGA-02-0047-01 13 73336102 73336102 T A DIS3 Missense_Mutation p.L767F 0.41 deleterious(0) probably_damaging(1) TCGA-02-0047-01 14 105518226 105518226 C T GPR132 Missense_Mutation p.C83Y 0.31 deleterious(0.01) possibly_damaging(0.805) TCGA-02-0047-01 14 106815987 106815987 C T IGHV3-33 Missense_Mutation p.G29D 0.35 tolerated_low_confidence(0.19) possibly_damaging(0.529) TCGA-02-0047-01 14 107211056 107211056 G A IGHV3-73 Missense_Mutation p.A78V 0.13 tolerated_low_confidence(0.11) benign(0.001) TCGA-02-0047-01 15 34047281 34047281 G A RYR3 Missense_Mutation p.M2805I 0.28 benign(0.002) TCGA-02-0047-01 15 35529877 35529877 C T ANP32AP1 RNA 0.24 TCGA-02-0047-01 15 40512942 40512942 G A BUB1B Silent p.G1045G 0.35 TCGA-02-0047-01 15 56993158 56993158 A - ZNF280D Frame_Shift_Del p.V119Lfs*12 0.15 TCGA-02-0047-01 15 79059831 79059831 T G ADAMTS7 Missense_Mutation p.S917R 0.45 tolerated(1) benign(0.002) TCGA-02-0047-01 16 1478504 1478504 C T C16orf91 Silent p.A49A 0.39 TCGA-02-0047-01 17 31322643 31322643 C - SPACA3 Frame_Shift_Del p.S85Vfs*86 0.36 TCGA-02-0047-01 17 33521251 33521251 G A SLC35G3 Missense_Mutation p.R26C 0.41 deleterious(0.03) benign(0.247) TCGA-02-0047-01 17 38122551 38122551 C T GSDMA Silent p.L85L 0.31 TCGA-02-0047-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.34 deleterious(0.01) possibly_damaging(0.655) TCGA-02-0047-01 17 66391258 66391258 G A ARSG Missense_Mutation p.S379N 0.26 tolerated(0.21) benign(0.082) TCGA-02-0047-01 17 76475664 76475664 G A DNAH17 Silent p.T2587T 0.23 TCGA-02-0047-01 17 953842 953842 C T ABR Missense_Mutation p.G532S 0.27 tolerated(0.07) probably_damaging(0.951) TCGA-02-0047-01 18 56010160 56010160 G A NEDD4L Missense_Mutation p.R467H 0.05 tolerated(0.1) possibly_damaging(0.886) TCGA-02-0047-01 18 56148899 56148899 G A ALPK2 3'UTR 0.33 TCGA-02-0047-01 19 15533879 15533879 C T WIZ 3'UTR 0.20 TCGA-02-0047-01 19 3578077 3578077 G A HMG20B Missense_Mutation p.V303I 0.15 tolerated(0.25) benign(0) TCGA-02-0047-01 19 5668177 5668177 G A SAFB Missense_Mutation p.G877S 0.03 tolerated(0.13) unknown(0) TCGA-02-0047-01 1 117552817 117552817 A T CD101 Missense_Mutation p.Y130F 0.24 tolerated(0.08) possibly_damaging(0.651) TCGA-02-0047-01 1 12418559 12418559 C T VPS13D Missense_Mutation p.P3348L 0.15 probably_damaging(0.998) TCGA-02-0047-01 1 144816536 144816536 T G NBPF9 Silent p.T222T 0.10 TCGA-02-0047-01 1 19199117 19199117 G A ALDH4A1 3'UTR 0.50 TCGA-02-0047-01 1 198721383 198721383 C T PTPRC Silent p.I1071I 0.21 TCGA-02-0047-01 1 201750337 201750337 C T NAV1 Silent p.I521I 0.06 TCGA-02-0047-01 1 222923428 222923428 G A FAM177B 3'UTR 0.33 TCGA-02-0047-01 1 233395011 233395011 C T PCNXL2 Silent p.A199A 0.38 TCGA-02-0047-01 1 237794836 237794836 T C RYR2 Missense_Mutation p.S2184P 0.21 probably_damaging(0.943) TCGA-02-0047-01 1 66083830 66083830 G T LEPR Splice_Site p.X799_splice 0.05 TCGA-02-0047-01 20 11899075 11899075 A G BTBD3 Missense_Mutation p.E51G 0.39 deleterious_low_confidence(0.02) benign(0.355) TCGA-02-0047-01 20 36676850 36676850 T C RPRD1B Missense_Mutation p.S128P 0.23 tolerated(0.08) benign(0.122) TCGA-02-0047-01 21 34860697 34860697 A G DNAJC28 Missense_Mutation p.V335A 0.13 tolerated(0.96) benign(0) TCGA-02-0047-01 22 38369502 38369502 T G SOX10 Nonstop_Mutation p.*467Yext*86 0.31 TCGA-02-0047-01 22 46807508 46807508 C T CELSR1 Missense_Mutation p.G1587D 0.31 deleterious(0.01) probably_damaging(1) TCGA-02-0047-01 22 50719359 50719359 C T PLXNB2 Silent p.E1269E 0.24 TCGA-02-0047-01 2 103095487 103095487 G A SLC9A4 Missense_Mutation p.R149Q 0.33 deleterious(0.01) probably_damaging(0.915) TCGA-02-0047-01 2 113588108 113588108 G A IL1B Nonsense_Mutation p.R214* 0.08 TCGA-02-0047-01 2 210896087 210896087 T A KANSL1L Intron 0.16 TCGA-02-0047-01 2 220116339 220116339 T C TUBA4A Missense_Mutation p.Y108C 0.09 deleterious_low_confidence(0.02) benign(0.262) TCGA-02-0047-01 2 220286104 220286104 T A DES Missense_Mutation p.F356I 0.32 deleterious(0.02) possibly_damaging(0.589) TCGA-02-0047-01 2 54852086 54852086 G A SPTBN1 Missense_Mutation p.R443H 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-02-0047-01 2 60688379 60688379 C G BCL11A Missense_Mutation p.Q556H 0.10 tolerated(0.23) benign(0.216) TCGA-02-0047-01 3 119300972 119300972 C T ADPRH Intron 0.29 TCGA-02-0047-01 3 178921553 178921553 T A PIK3CA Missense_Mutation p.N345K 0.34 deleterious(0.01) probably_damaging(1) TCGA-02-0047-01 3 21462765 21462765 G A ZNF385D Missense_Mutation p.R377W 0.11 deleterious(0) probably_damaging(0.973) TCGA-02-0047-01 4 119475218 119475218 C T CEP170P1 RNA 0.22 TCGA-02-0047-01 4 175180976 175180976 C A FBXO8 Silent p.G110G 0.21 TCGA-02-0047-01 4 184201980 184201980 G C WWC2 Missense_Mutation p.E872Q 0.25 tolerated(0.05) benign(0.342) TCGA-02-0047-01 4 38777231 38777231 C T TLR10 5'UTR 0.25 TCGA-02-0047-01 4 66467624 66467624 T A EPHA5 Missense_Mutation p.Q215H 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-02-0047-01 5 140774103 140774103 G A PCDHGA8 Missense_Mutation p.V575M 0.25 deleterious_low_confidence(0.04) benign(0.317) TCGA-02-0047-01 5 178556976 178556976 G A ADAMTS2 Missense_Mutation p.T805M 0.37 deleterious(0.02) possibly_damaging(0.529) TCGA-02-0047-01 5 178585775 178585775 C T ADAMTS2 Missense_Mutation p.D361N 0.25 deleterious(0) probably_damaging(1) TCGA-02-0047-01 5 74028894 74028894 G A GFM2 Missense_Mutation p.R514C 0.23 deleterious(0) benign(0.052) TCGA-02-0047-01 5 74041590 74041590 T C GFM2 Silent p.K254K 0.34 TCGA-02-0047-01 6 129371087 129371087 T A LAMA2 Missense_Mutation p.L46H 0.34 deleterious(0) probably_damaging(1) TCGA-02-0047-01 6 148865365 148865365 G A SASH1 Missense_Mutation p.R920H 0.16 tolerated_low_confidence(0.56) benign(0.191) TCGA-02-0047-01 6 151152163 151152163 G A PLEKHG1 Missense_Mutation p.G639E 0.22 tolerated(0.25) benign(0.033) TCGA-02-0047-01 6 161173177 161173177 C T PLG Missense_Mutation p.A719V 0.28 tolerated(0.22) benign(0.367) TCGA-02-0047-01 6 41162491 41162491 G A TREML2 Missense_Mutation p.P153S 0.33 tolerated(0.06) benign(0.178) TCGA-02-0047-01 6 49976918 49976918 G T DEFB110 Missense_Mutation p.T41K 0.09 deleterious_low_confidence(0.04) probably_damaging(0.977) TCGA-02-0047-01 6 54791195 54791195 T C FAM83B Silent p.F157F 0.08 TCGA-02-0047-01 7 99758263 99758263 C T GAL3ST4 Missense_Mutation p.R250Q 0.32 tolerated(0.54) benign(0.001) TCGA-02-0047-01 8 101273881 101273881 C T RNF19A Missense_Mutation p.R524Q 0.05 tolerated(0.13) benign(0.361) TCGA-02-0047-01 8 17916969 17916969 C T ASAH1 Missense_Mutation p.D324N 0.16 tolerated(0.46) benign(0.006) TCGA-02-0047-01 8 66963845 66963845 C T DNAJC5B Silent p.Y21Y 0.34 TCGA-02-0047-01 X 41075440 41075440 C T USP9X Nonsense_Mutation p.Q1874* 0.64 TCGA-02-0055-01 10 23250972 23250972 G A ARMC3 Missense_Mutation p.G233R 0.60 deleterious(0.01) probably_damaging(1) TCGA-02-0055-01 10 26359049 26359049 C A MYO3A Missense_Mutation p.L394I 0.44 tolerated(0.07) benign(0.099) TCGA-02-0055-01 10 38126948 38126948 A G ZNF248 Missense_Mutation p.V36A 0.49 deleterious(0.03) benign(0.389) TCGA-02-0055-01 10 45473139 45473139 C T C10orf10 Missense_Mutation p.E114K 0.18 tolerated(0.1) possibly_damaging(0.801) TCGA-02-0055-01 10 89692907 89692907 A G PTEN Missense_Mutation p.T131A 0.51 deleterious(0) probably_damaging(0.977) TCGA-02-0055-01 11 4661587 4661587 C T OR51D1 Silent p.H189H 0.22 TCGA-02-0055-01 11 608380 608380 A T PHRF1 Missense_Mutation p.D974V 0.30 deleterious(0.04) probably_damaging(0.953) TCGA-02-0055-01 11 85733503 85733503 A T PICALM Missense_Mutation p.M120K 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-02-0055-01 12 117768967 117768967 C T NOS1 5'Flank 0.10 TCGA-02-0055-01 12 125397201 125397201 G T UBC Missense_Mutation p.L373M 0.04 deleterious(0.02) probably_damaging(1) TCGA-02-0055-01 12 5842030 5842030 A G ANO2 Splice_Site p.X478_splice 0.08 TCGA-02-0055-01 12 65445111 65445111 C T WIF1 3'UTR 0.54 TCGA-02-0055-01 12 6946911 6946911 G A LEPREL2 Missense_Mutation p.R575H 0.41 deleterious(0) probably_damaging(0.999) TCGA-02-0055-01 15 28202861 28202861 C G OCA2 Missense_Mutation p.V553L 0.24 deleterious(0.02) possibly_damaging(0.864) TCGA-02-0055-01 15 31342763 31342763 G A TRPM1 Missense_Mutation p.P446L 0.34 deleterious(0.02) benign(0.109) TCGA-02-0055-01 15 41483752 41483752 G A EXD1 Missense_Mutation p.T193M 0.31 deleterious(0) probably_damaging(0.994) TCGA-02-0055-01 15 58253017 58253017 C T ALDH1A2 Missense_Mutation p.A479T 0.18 tolerated(0.1) benign(0.004) TCGA-02-0055-01 16 23360038 23360038 C T SCNN1B Missense_Mutation p.R40C 0.12 deleterious(0) probably_damaging(1) TCGA-02-0055-01 16 3065604 3065604 G A CLDN6 Missense_Mutation p.A140V 0.42 deleterious(0) probably_damaging(0.988) TCGA-02-0055-01 16 31422517 31422517 G A ITGAD Missense_Mutation p.V493M 0.21 tolerated(0.05) probably_damaging(0.952) TCGA-02-0055-01 16 84270708 84270708 C T KCNG4 Silent p.A128A 0.07 TCGA-02-0055-01 17 66416616 66416616 T G ARSG 3'UTR 0.56 TCGA-02-0055-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.61 deleterious(0) probably_damaging(1) TCGA-02-0055-01 19 39597641 39597641 G A PAPL Missense_Mutation p.V390M 0.14 deleterious(0.03) benign(0.067) TCGA-02-0055-01 19 43376198 43376198 C A PSG1 Splice_Site p.X144_splice 0.04 TCGA-02-0055-01 19 51322408 51322408 G T KLK1 3'Flank 0.40 TCGA-02-0055-01 19 9960204 9960204 C A PIN1 3'UTR 0.40 TCGA-02-0055-01 1 103453212 103453212 G A COL11A1 Missense_Mutation p.P827S 0.42 unknown(0) TCGA-02-0055-01 1 158912123 158912123 G A PYHIN1 Silent p.P312P 0.39 TCGA-02-0055-01 1 172108006 172108006 G A DNM3 Intron 0.88 TCGA-02-0055-01 1 214787153 214787153 A G CENPF Missense_Mutation p.K19R 0.35 probably_damaging(0.994) TCGA-02-0055-01 1 228504460 228504460 G A OBSCN Missense_Mutation p.G5403S 0.34 probably_damaging(0.986) TCGA-02-0055-01 1 248263034 248263034 C T OR2L13 Silent p.Y119Y 0.29 TCGA-02-0055-01 1 57395177 57395177 C T C8B Missense_Mutation p.G559E 0.29 tolerated(0.08) possibly_damaging(0.499) TCGA-02-0055-01 1 60294482 60294482 A T HOOK1 Missense_Mutation p.L60F 0.32 tolerated(0.1) probably_damaging(0.975) TCGA-02-0055-01 20 29960755 29960755 C T DEFB118 Nonsense_Mutation p.R52* 0.31 TCGA-02-0055-01 20 31022345 31022345 C T ASXL1 Silent p.G610G 0.28 TCGA-02-0055-01 20 35075140 35075140 G A DLGAP4 Missense_Mutation p.C483Y 0.34 tolerated(0.08) probably_damaging(0.933) TCGA-02-0055-01 21 31864264 31864264 G A KRTAP19-3 Silent p.Y4Y 0.32 TCGA-02-0055-01 22 26937269 26937269 G A TPST2 Missense_Mutation p.R110C 0.33 deleterious(0.01) probably_damaging(0.96) TCGA-02-0055-01 2 170494029 170494029 G C PPIG Missense_Mutation p.G754A 0.16 deleterious_low_confidence(0) unknown(0) TCGA-02-0055-01 2 179412263 179412263 T C TTN Missense_Mutation p.K31364E 0.46 TCGA-02-0055-01 2 238275663 238275663 G A COL6A3 Missense_Mutation p.L1723F 0.31 probably_damaging(0.944) TCGA-02-0055-01 3 14905722 14905722 G A FGD5 Silent p.S871S 0.36 TCGA-02-0055-01 3 4816936 4816936 G A ITPR1 Missense_Mutation p.R1982H 0.29 deleterious(0) probably_damaging(1) TCGA-02-0055-01 3 58095770 58095770 G A FLNB Missense_Mutation p.R786Q 0.13 tolerated(0.15) benign(0.297) TCGA-02-0055-01 4 1209830 1209830 G A CTBP1 Silent p.C237C 0.06 TCGA-02-0055-01 4 126373451 126373451 G A FAT4 Silent p.T3760T 0.06 TCGA-02-0055-01 4 185074883 185074883 C T ENPP6 Missense_Mutation p.R82H 0.08 tolerated(0.06) probably_damaging(0.99) TCGA-02-0055-01 4 3449235 3449235 G A HGFAC Missense_Mutation p.V458I 0.31 tolerated(1) benign(0.016) TCGA-02-0055-01 4 3769412 3769412 G A ADRA2C Missense_Mutation p.R360Q 0.37 tolerated(0.43) benign(0.067) TCGA-02-0055-01 4 69362609 69362609 C A TMPRSS11E 3'UTR 0.37 TCGA-02-0055-01 4 74354406 74354406 T C AFM Missense_Mutation p.L258P 0.35 deleterious(0) probably_damaging(0.989) TCGA-02-0055-01 5 128301930 128301930 G A SLC27A6 Missense_Mutation p.V34M 0.14 tolerated(0.1) benign(0.002) TCGA-02-0055-01 5 140712400 140712400 C T PCDHGA1 Missense_Mutation p.R717W 0.43 tolerated_low_confidence(0.1) benign(0.082) TCGA-02-0055-01 5 163558 163558 C T PLEKHG4B Missense_Mutation p.P768L 0.28 tolerated(0.23) benign(0.001) TCGA-02-0055-01 5 177466410 177466410 G A FAM153C Missense_Mutation p.R44H 0.36 tolerated_low_confidence(0.07) benign(0.106) TCGA-02-0055-01 5 61887491 61887491 T A IPO11 Silent p.T930T 0.04 TCGA-02-0055-01 6 149795611 149795611 C A ZC3H12D Silent p.V23V 0.44 TCGA-02-0055-01 6 56484825 56484826 - GCAAT DST Intron 0.22 TCGA-02-0055-01 7 107790294 107790297 ACAA - NRCAM 3'UTR 0.30 TCGA-02-0055-01 7 139824534 139824534 C T KDM7A Missense_Mutation p.R313H 0.26 deleterious(0) possibly_damaging(0.57) TCGA-02-0055-01 7 143807248 143807248 C T OR2A2 Silent p.T191T 0.23 TCGA-02-0055-01 8 57079222 57079222 C T PLAG1 Missense_Mutation p.M361I 0.31 tolerated(0.35) benign(0.38) TCGA-02-0055-01 8 99044505 99044505 T C MATN2 Silent p.S847S 0.32 TCGA-02-0055-01 X 103267902 103267902 G A H2BFWT Missense_Mutation p.H111Y 0.42 tolerated(0.09) possibly_damaging(0.834) TCGA-02-0055-01 X 129629140 129629140 C T RP1-274L7.1 RNA 0.27 TCGA-02-0055-01 X 132549058 132549058 G A GPC4 5'UTR 0.16 TCGA-02-0055-01 X 14027285 14027285 C T GEMIN8 Missense_Mutation p.R159Q 0.39 tolerated(0.06) benign(0.286) TCGA-02-0055-01 X 151336828 151336828 T A GABRA3 Missense_Mutation p.S451C 0.27 deleterious(0.04) probably_damaging(0.987) TCGA-02-0055-01 X 1584470 1584470 C T P2RY8 Missense_Mutation p.A328T 0.32 tolerated(0.11) benign(0.127) TCGA-02-0055-01 X 21674666 21674666 G A KLHL34 Missense_Mutation p.A414V 0.32 tolerated(0.13) possibly_damaging(0.707) TCGA-02-0055-01 X 47102906 47102906 C T USP11 Silent p.Y608Y 0.26 TCGA-02-0055-01 X 47775654 47775654 G A ZNF81 Missense_Mutation p.D537N 0.28 tolerated(0.21) probably_damaging(0.938) TCGA-02-0055-01 X 71424939 71424939 C T ERCC6L Silent p.A1226A 0.26 TCGA-02-0055-01 X 79286010 79286010 C T TBX22 Silent p.G321G 0.12 TCGA-02-2470-01 10 17735226 17735226 A G STAM Silent p.A150A 0.53 TCGA-02-2470-01 10 21461321 21461321 T C NEBL-AS1 5'Flank 0.44 TCGA-02-2470-01 10 30315760 30315760 G A KIAA1462 Missense_Mutation p.A1106V 0.49 tolerated(0.2) benign(0.114) TCGA-02-2470-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.51 TCGA-02-2470-01 11 119210227 119210227 G A C1QTNF5 Silent p.F182F 0.24 TCGA-02-2470-01 11 26569054 26569054 G A ANO3 Missense_Mutation p.V416I 0.26 tolerated(0.05) probably_damaging(0.923) TCGA-02-2470-01 11 55541619 55541619 C T OR5D13 Missense_Mutation p.R236C 0.28 tolerated(0.07) benign(0.082) TCGA-02-2470-01 11 59481032 59481032 G A OR10V1 Missense_Mutation p.T96M 0.23 tolerated(0.16) benign(0.207) TCGA-02-2470-01 11 64953733 64953733 G A CAPN1 Missense_Mutation p.R228H 0.26 deleterious(0.03) benign(0.005) TCGA-02-2470-01 12 119588965 119588965 C G SRRM4 Missense_Mutation p.S407C 0.22 deleterious_low_confidence(0) possibly_damaging(0.788) TCGA-02-2470-01 12 130898833 130898833 C T RIMBP2 Missense_Mutation p.R830H 0.23 tolerated(0.2) benign(0.006) TCGA-02-2470-01 12 48143197 48143197 C A RAPGEF3 Missense_Mutation p.K339N 0.14 deleterious(0) probably_damaging(0.994) TCGA-02-2470-01 12 50570824 50570824 A C LIMA1 3'UTR 0.25 TCGA-02-2470-01 13 102375254 102375254 G A FGF14 Missense_Mutation p.T229M 0.24 tolerated(0.07) possibly_damaging(0.888) TCGA-02-2470-01 14 101201218 101201218 C T DLK1 Silent p.G379G 0.18 TCGA-02-2470-01 14 104508512 104508512 A C TDRD9 Missense_Mutation p.Q1321P 0.28 deleterious(0.01) benign(0.397) TCGA-02-2470-01 14 44976273 44976273 T A FSCB 5'UTR 0.08 TCGA-02-2470-01 14 60951623 60951623 C T C14orf39 Missense_Mutation p.E28K 0.31 deleterious(0.04) possibly_damaging(0.801) TCGA-02-2470-01 15 43552356 43552356 C T TGM5 Silent p.A110A 0.31 TCGA-02-2470-01 15 89056199 89056199 G A DET1 Nonsense_Mutation p.R557* 0.06 TCGA-02-2470-01 15 89073948 89073948 C T DET1 Missense_Mutation p.R341Q 0.19 deleterious(0.03) probably_damaging(0.987) TCGA-02-2470-01 15 89073977 89073979 GAA - DET1 In_Frame_Del p.F331del 0.19 TCGA-02-2470-01 16 31368588 31368588 C T ITGAX Silent p.T111T 0.18 TCGA-02-2470-01 16 57760043 57760043 G A CCDC135 Missense_Mutation p.V608M 0.20 tolerated(0.05) possibly_damaging(0.809) TCGA-02-2470-01 17 57292254 57292254 T G SMG8 Missense_Mutation p.F956C 0.25 deleterious(0) probably_damaging(0.979) TCGA-02-2470-01 17 60813149 60813149 C T MARCH10 Intron 0.50 TCGA-02-2470-01 17 7121951 7121951 C G DLG4 Missense_Mutation p.R9S 0.38 tolerated_low_confidence(0.14) benign(0.001) TCGA-02-2470-01 17 76464713 76464713 G A DNAH17 Missense_Mutation p.R2908C 0.26 probably_damaging(0.914) TCGA-02-2470-01 17 76498905 76498905 C T DNAH17-AS1 3'UTR 0.41 TCGA-02-2470-01 17 79225187 79225187 G A SLC38A10 Intron 0.18 TCGA-02-2470-01 18 19995570 19995570 T A CTAGE1 Missense_Mutation p.R735S 0.22 deleterious(0) benign(0) TCGA-02-2470-01 18 44560403 44560403 T C TCEB3B Silent p.Q411Q 0.22 TCGA-02-2470-01 18 60025550 60025550 C T TNFRSF11A Missense_Mutation p.T166M 0.24 deleterious(0.05) benign(0.277) TCGA-02-2470-01 19 13192662 13192662 C - NFIX Frame_Shift_Del p.G417Dfs*47 0.37 TCGA-02-2470-01 19 36340038 36340038 C T NPHS1 Silent p.P284P 0.25 TCGA-02-2470-01 19 3730053 3730053 C T TJP3 Silent p.N71N 0.24 TCGA-02-2470-01 19 3783147 3783147 G A MATK Missense_Mutation p.S219L 0.17 tolerated(0.1) probably_damaging(0.999) TCGA-02-2470-01 19 42730344 42730344 C G ZNF526 Missense_Mutation p.R597G 0.27 tolerated(0.24) possibly_damaging(0.453) TCGA-02-2470-01 19 5757927 5757927 A G CATSPERD Missense_Mutation p.N451S 0.22 deleterious(0.05) benign(0.148) TCGA-02-2470-01 19 58490980 58490980 G C ZNF606 Missense_Mutation p.F356L 0.22 tolerated(0.65) probably_damaging(0.968) TCGA-02-2470-01 1 111146955 111146955 C A KCNA2 Missense_Mutation p.W150C 0.26 deleterious(0) probably_damaging(0.992) TCGA-02-2470-01 1 237604722 237604722 T A RYR2 Missense_Mutation p.L370Q 0.26 probably_damaging(0.986) TCGA-02-2470-01 1 31658176 31658176 T C NKAIN1 Splice_Site p.X65_splice 0.21 TCGA-02-2470-01 1 93302910 93302910 A C RPL5 Intron 0.03 TCGA-02-2470-01 20 23016581 23016581 C T SSTR4 Missense_Mutation p.A154V 0.24 deleterious(0.02) benign(0.176) TCGA-02-2470-01 20 31606072 31606072 C G BPIFB2 Missense_Mutation p.N195K 0.19 tolerated(0.64) benign(0.003) TCGA-02-2470-01 20 37534721 37534721 C T PPP1R16B Missense_Mutation p.A269V 0.26 deleterious(0) probably_damaging(0.999) TCGA-02-2470-01 20 9417712 9417712 G A PLCB4 Missense_Mutation p.A881T 0.06 tolerated(0.56) benign(0.011) TCGA-02-2470-01 21 42773954 42773954 A G MX2 Missense_Mutation p.E491G 0.17 deleterious(0) benign(0.188) TCGA-02-2470-01 2 102638708 102638708 C T IL1R2 Silent p.L250L 0.08 TCGA-02-2470-01 2 108609520 108609520 C A SLC5A7 Missense_Mutation p.L129I 0.06 tolerated(0.12) possibly_damaging(0.53) TCGA-02-2470-01 2 1488428 1488428 G A TPO Missense_Mutation p.V467M 0.24 tolerated(0.29) possibly_damaging(0.523) TCGA-02-2470-01 2 153003822 153003822 C T STAM2 Missense_Mutation p.A101T 0.23 deleterious(0.02) benign(0.11) TCGA-02-2470-01 2 27303034 27303034 C T EMILIN1 Silent p.Y62Y 0.25 TCGA-02-2470-01 2 54094006 54094006 G A PSME4 Missense_Mutation p.R1759C 0.29 deleterious(0.02) possibly_damaging(0.763) TCGA-02-2470-01 3 111264248 111264248 C T CD96 Silent p.H139H 0.24 TCGA-02-2470-01 3 38411555 38411555 A G XYLB Missense_Mutation p.M219V 0.17 deleterious(0) probably_damaging(0.964) TCGA-02-2470-01 4 100349053 100349053 G A ADH7 Silent p.T167T 0.21 TCGA-02-2470-01 4 46967126 46967126 G A GABRA4 Missense_Mutation p.S332L 0.25 deleterious(0) probably_damaging(0.999) TCGA-02-2470-01 4 96761886 96761886 C T PDHA2 Silent p.G195G 0.31 TCGA-02-2470-01 5 172336690 172336690 A G ERGIC1 Missense_Mutation p.D59G 0.21 deleterious(0) probably_damaging(0.966) TCGA-02-2470-01 5 180326142 180326142 C T BTNL8 5'UTR 0.38 TCGA-02-2470-01 5 37480065 37480065 T G WDR70 Nonsense_Mutation p.Y272* 0.22 TCGA-02-2470-01 5 7827089 7827089 C A ADCY2 3'UTR 0.10 TCGA-02-2470-01 6 117215161 117215161 A C RFX6 Missense_Mutation p.Y193S 0.22 deleterious(0) possibly_damaging(0.703) TCGA-02-2470-01 6 158483196 158483196 G A SYNJ2 Missense_Mutation p.R376H 0.20 deleterious(0.01) benign(0.07) TCGA-02-2470-01 7 139726106 139726106 C T PARP12 Silent p.V557V 0.16 TCGA-02-2470-01 7 146818164 146818164 G A CNTNAP2 Missense_Mutation p.R283H 0.18 tolerated(0.2) benign(0.413) TCGA-02-2470-01 7 151962124 151962124 T C KMT2C Missense_Mutation p.K395E 0.03 possibly_damaging(0.895) TCGA-02-2470-01 8 24772112 24772112 C T NEFM Missense_Mutation p.A269V 0.27 deleterious(0) unknown(0) TCGA-02-2470-01 9 36651764 36651764 G T MELK Missense_Mutation p.A315S 0.49 deleterious(0) probably_damaging(0.999) TCGA-02-2470-01 9 39888189 39888189 G T SPATA31A2 Silent p.L392L 0.53 TCGA-02-2470-01 X 134294392 134294392 T C CT55 Missense_Mutation p.E123G 0.74 tolerated(0.17) benign(0.005) TCGA-02-2470-01 X 1428507 1428507 C T CSF2RA 3'UTR 0.31 TCGA-02-2470-01 X 26157158 26157158 G A MAGEB18 Missense_Mutation p.R19H 0.53 tolerated(0.1) benign(0.159) TCGA-02-2483-01 10 27350076 27350076 T C ANKRD26 Missense_Mutation p.M487V 0.38 tolerated(0.32) benign(0.007) TCGA-02-2483-01 10 28409253 28409253 C A MPP7 Missense_Mutation p.G253W 0.22 deleterious(0) probably_damaging(1) TCGA-02-2483-01 10 28409254 28409254 A G MPP7 Silent p.A252A 0.21 TCGA-02-2483-01 10 60553292 60553292 G A BICC1 Missense_Mutation p.V366I 0.14 tolerated(0.2) benign(0.002) TCGA-02-2483-01 11 100863381 100863381 G T TMEM133 Silent p.V114V 0.30 TCGA-02-2483-01 11 55579759 55579759 G T OR5L1 Missense_Mutation p.V273L 0.35 deleterious(0) possibly_damaging(0.841) TCGA-02-2483-01 11 58207194 58207194 A G OR5B12 Missense_Mutation p.I144T 0.06 tolerated_low_confidence(0.32) benign(0.039) TCGA-02-2483-01 11 68704092 68704092 G A IGHMBP2 Missense_Mutation p.G715D 0.35 tolerated(0.57) benign(0.006) TCGA-02-2483-01 12 10962585 10962585 A T TAS2R9 Silent p.V30V 0.45 TCGA-02-2483-01 12 47628828 47628828 G A PCED1B 5'UTR 0.38 TCGA-02-2483-01 12 51685543 51685543 C T BIN2 Silent p.R449R 0.31 TCGA-02-2483-01 12 66638935 66638935 C A IRAK3 Missense_Mutation p.L403I 0.04 deleterious(0.01) possibly_damaging(0.873) TCGA-02-2483-01 13 113510350 113510350 G A ATP11A Missense_Mutation p.S790N 0.48 tolerated(1) benign(0.001) TCGA-02-2483-01 13 43155295 43155295 C A TNFSF11 Missense_Mutation p.H85N 0.04 tolerated(0.27) benign(0.008) TCGA-02-2483-01 15 25322212 25322212 T C SNORD116-12 RNA 0.28 TCGA-02-2483-01 15 72460907 72460907 T C GRAMD2 Missense_Mutation p.I65V 0.36 tolerated(0.56) benign(0.002) TCGA-02-2483-01 15 78454015 78454015 G T IDH3A Missense_Mutation p.V128F 0.03 tolerated(0.17) possibly_damaging(0.56) TCGA-02-2483-01 16 14704541 14704541 T C PARN Missense_Mutation p.T172A 0.06 tolerated(0.78) benign(0.001) TCGA-02-2483-01 16 21269999 21269999 A G CRYM 3'UTR 0.47 TCGA-02-2483-01 16 31087887 31087887 G A ZNF646 Missense_Mutation p.G81D 0.25 tolerated(0.08) probably_damaging(0.999) TCGA-02-2483-01 17 39727935 39727935 C T KRT9 Missense_Mutation p.G104S 0.42 tolerated_low_confidence(0.27) unknown(0) TCGA-02-2483-01 17 722696 722696 C T NXN Missense_Mutation p.R268Q 0.38 tolerated(0.13) possibly_damaging(0.878) TCGA-02-2483-01 17 73627684 73627684 C T RECQL5 Missense_Mutation p.D432N 0.08 deleterious(0) probably_damaging(0.997) TCGA-02-2483-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.90 tolerated(0.13) possibly_damaging(0.631) TCGA-02-2483-01 18 9124948 9124948 C T NDUFV2 Silent p.N182N 0.49 TCGA-02-2483-01 19 1004870 1004870 A G GRIN3B Missense_Mutation p.D457G 0.33 deleterious(0.04) benign(0.02) TCGA-02-2483-01 19 18331288 18331288 G A PDE4C Silent p.D211D 0.35 TCGA-02-2483-01 19 36017633 36017633 G T SBSN Missense_Mutation p.H517Q 0.05 deleterious(0.03) possibly_damaging(0.767) TCGA-02-2483-01 19 37904719 37904719 G T ZNF569 Missense_Mutation p.Q281K 0.03 tolerated(0.21) probably_damaging(0.992) TCGA-02-2483-01 19 44500816 44500816 C A ZNF155 Missense_Mutation p.F280L 0.03 deleterious(0.02) probably_damaging(0.996) TCGA-02-2483-01 19 46973358 46973358 C A PNMAL1 Missense_Mutation p.W312L 0.33 deleterious(0.01) possibly_damaging(0.504) TCGA-02-2483-01 19 46973359 46973359 A T PNMAL1 Missense_Mutation p.W312R 0.33 tolerated(0.28) possibly_damaging(0.781) TCGA-02-2483-01 19 6711035 6711035 C T C3 Missense_Mutation p.R481H 0.07 tolerated(0.12) benign(0.005) TCGA-02-2483-01 19 7626443 7626443 G A PNPLA6 Missense_Mutation p.A1375T 0.32 deleterious_low_confidence(0.01) benign(0.121) TCGA-02-2483-01 1 153313050 153313050 G C PGLYRP4 Missense_Mutation p.P211A 0.14 deleterious(0.03) benign(0.317) TCGA-02-2483-01 1 28800112 28800112 G A PHACTR4 Silent p.P300P 0.41 TCGA-02-2483-01 1 67561965 67561965 A G C1orf141 Missense_Mutation p.V129A 0.32 tolerated(0.35) possibly_damaging(0.728) TCGA-02-2483-01 22 29707873 29707873 G A GAS2L1 3'UTR 0.18 TCGA-02-2483-01 22 41564740 41564740 A G EP300 Silent p.G1347G 0.05 TCGA-02-2483-01 2 128471476 128471476 T C WDR33 Missense_Mutation p.R997G 0.04 deleterious_low_confidence(0.02) possibly_damaging(0.879) TCGA-02-2483-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-02-2483-01 2 21230155 21230155 C G APOB Missense_Mutation p.E3195D 0.04 benign(0.082) TCGA-02-2483-01 2 21246441 21246441 T C APOB Missense_Mutation p.I854V 0.04 benign(0.052) TCGA-02-2483-01 2 54857158 54857158 C A SPTBN1 Silent p.L933L 0.38 TCGA-02-2483-01 3 100105109 100105109 C T TOMM70A Missense_Mutation p.R193H 0.29 deleterious(0) probably_damaging(0.943) TCGA-02-2483-01 3 169572742 169572742 G T LRRC31 Missense_Mutation p.L284M 0.32 deleterious(0) probably_damaging(0.996) TCGA-02-2483-01 3 171426553 171426553 T C PLD1 Silent p.T379T 0.05 TCGA-02-2483-01 3 367748 367748 G A CHL1 Splice_Site p.X66_splice 0.46 TCGA-02-2483-01 4 39184090 39184090 C A WDR19 5'UTR 0.57 TCGA-02-2483-01 4 44176993 44176993 G T KCTD8 Silent p.L412L 0.05 TCGA-02-2483-01 4 73175150 73175150 C T ADAMTS3 Missense_Mutation p.V715M 0.27 deleterious(0.01) probably_damaging(0.977) TCGA-02-2483-01 4 76781769 76781769 A G PPEF2 3'UTR 0.06 TCGA-02-2483-01 5 36048994 36048994 T C UGT3A2 Silent p.P280P 0.04 TCGA-02-2483-01 6 44797403 44797403 G C SUPT3H 3'UTR 0.11 TCGA-02-2483-01 6 55223736 55223736 A T GFRAL Missense_Mutation p.K251M 0.04 deleterious(0) probably_damaging(0.976) TCGA-02-2483-01 7 100884131 100884131 C T FIS1 Missense_Mutation p.V79M 0.04 deleterious(0.01) benign(0.297) TCGA-02-2483-01 7 139281490 139281490 T C HIPK2 Missense_Mutation p.E897G 0.45 deleterious(0) benign(0.117) TCGA-02-2483-01 7 142571454 142571454 A G TRPV6 Missense_Mutation p.F512S 0.04 deleterious(0) probably_damaging(1) TCGA-02-2483-01 7 76883866 76883866 A T CCDC146 Missense_Mutation p.I165L 0.27 tolerated(0.13) benign(0.005) TCGA-02-2483-01 7 80387714 80387714 G C SEMA3C Missense_Mutation p.L526V 0.38 deleterious(0) probably_damaging(0.985) TCGA-02-2483-01 7 82532013 82532013 G A PCLO Silent p.H4494H 0.04 TCGA-02-2483-01 7 99103566 99103566 G T ZKSCAN5 Intron 0.30 TCGA-02-2483-01 8 101153144 101153144 T G FBXO43 Silent p.V446V 0.03 TCGA-02-2483-01 8 104337555 104337555 A G FZD6 Silent p.Q407Q 0.02 TCGA-02-2483-01 8 109468130 109468130 A G EMC2 Missense_Mutation p.R112G 0.05 tolerated(0.37) benign(0.001) TCGA-02-2483-01 8 120744252 120744252 T C TAF2 Missense_Mutation p.H1171R 0.68 tolerated_low_confidence(0.08) possibly_damaging(0.888) TCGA-02-2483-01 8 70594552 70594552 T C SLCO5A1 Missense_Mutation p.N550S 0.07 deleterious(0.01) possibly_damaging(0.604) TCGA-02-2483-01 9 99084300 99084300 G A SLC35D2 Silent p.N298N 0.06 TCGA-02-2483-01 X 47445082 47445082 C A TIMP1 Intron 0.29 TCGA-02-2483-01 X 76849273 76849273 C - ATRX Frame_Shift_Del p.W2001Cfs*14 0.50 TCGA-02-2485-01 10 105331407 105331407 G T NEURL1 Missense_Mutation p.E159D 0.44 deleterious(0.01) probably_damaging(0.997) TCGA-02-2485-01 10 43312886 43312888 GAA - BMS1 In_Frame_Del p.E842del 0.16 TCGA-02-2485-01 10 96827051 96827051 C T CYP2C8 Missense_Mutation p.R132Q 0.82 deleterious(0.01) possibly_damaging(0.529) TCGA-02-2485-01 11 102641522 102641522 G A MMP10 3'UTR 0.41 TCGA-02-2485-01 11 1080301 1080301 G A MUC2 Missense_Mutation p.G341R 0.28 possibly_damaging(0.642) TCGA-02-2485-01 11 56310330 56310330 G C OR5M11 Missense_Mutation p.T135R 0.44 deleterious(0.01) benign(0.094) TCGA-02-2485-01 11 75590966 75590966 G A UVRAG Missense_Mutation p.R105H 0.38 tolerated(0.53) benign(0.022) TCGA-02-2485-01 12 6675301 6675301 T G NOP2 Missense_Mutation p.D147A 0.50 tolerated(0.17) benign(0.005) TCGA-02-2485-01 14 101500139 101500139 C T MIR495 RNA 0.33 TCGA-02-2485-01 14 106109749 106109749 C T IGHG2 Missense_Mutation p.V258M 0.57 deleterious(0) probably_damaging(0.997) TCGA-02-2485-01 14 106173580 106173580 G A IGHA1 Silent p.I329I 0.37 TCGA-02-2485-01 14 61189964 61189964 G A SIX4 Missense_Mutation p.R277C 0.06 deleterious(0) possibly_damaging(0.87) TCGA-02-2485-01 16 20548636 20548636 G A ACSM2B Nonsense_Mutation p.R560* 0.39 TCGA-02-2485-01 16 24366257 24366257 C T CACNG3 Silent p.N133N 0.49 TCGA-02-2485-01 16 31286996 31286996 C T ITGAM Missense_Mutation p.R329W 0.38 deleterious(0) possibly_damaging(0.601) TCGA-02-2485-01 16 71004595 71004595 C T HYDIN Missense_Mutation p.R1816H 0.35 benign(0) TCGA-02-2485-01 17 44851175 44851175 T C WNT3 Missense_Mutation p.N61D 0.43 tolerated(0.06) possibly_damaging(0.665) TCGA-02-2485-01 17 56621053 56621053 C A C17orf47 Missense_Mutation p.K165N 0.14 deleterious(0.02) possibly_damaging(0.895) TCGA-02-2485-01 17 72469900 72469900 C T CD300A Missense_Mutation p.T89I 0.42 deleterious(0) probably_damaging(0.997) TCGA-02-2485-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.33 deleterious(0) probably_damaging(1) TCGA-02-2485-01 17 7578550 7578550 G T TP53 Missense_Mutation p.S127Y 0.48 deleterious(0) probably_damaging(1) TCGA-02-2485-01 17 8044257 8044257 G A PER1 3'UTR 0.26 TCGA-02-2485-01 19 19756294 19756294 C T ATP13A1 Silent p.A1184A 0.25 TCGA-02-2485-01 19 23927494 23927494 T C ZNF681 Silent p.E286E 0.32 TCGA-02-2485-01 19 375850 375850 G A THEG Missense_Mutation p.R41W 0.37 deleterious_low_confidence(0.04) benign(0.016) TCGA-02-2485-01 19 3980665 3980665 A C EEF2 Missense_Mutation p.I398S 0.28 deleterious(0) possibly_damaging(0.701) TCGA-02-2485-01 19 44222975 44222975 G A IRGC Missense_Mutation p.V89I 0.30 tolerated(0.06) possibly_damaging(0.477) TCGA-02-2485-01 19 45728158 45728158 G A EXOC3L2 Missense_Mutation p.R140C 0.20 deleterious(0) probably_damaging(0.916) TCGA-02-2485-01 19 54783691 54783691 C T LILRB2 Missense_Mutation p.A104T 0.33 tolerated(0.89) benign(0.003) TCGA-02-2485-01 19 55255258 55255260 CTT - KIR2DL3 In_Frame_Del p.S130del 0.23 TCGA-02-2485-01 19 9046871 9046871 G A MUC16 Missense_Mutation p.T11587M 0.33 benign(0.066) TCGA-02-2485-01 19 9361873 9361873 A G OR7E24 Missense_Mutation p.M52V 0.40 deleterious(0.04) benign(0.045) TCGA-02-2485-01 1 113059824 113059825 CT - WNT2B Frame_Shift_Del p.S256Rfs*7 0.44 TCGA-02-2485-01 1 152279764 152279764 C T FLG Missense_Mutation p.R2533H 0.33 benign(0.156) TCGA-02-2485-01 1 152785329 152785329 G T LCE1B 3'UTR 0.46 TCGA-02-2485-01 1 23110979 23110979 G A EPHB2 Missense_Mutation p.R74Q 0.47 tolerated(0.17) probably_damaging(0.972) TCGA-02-2485-01 22 44692617 44692617 G A KIAA1644 Silent p.N72N 0.47 TCGA-02-2485-01 2 166019327 166019327 T C SCN3A Missense_Mutation p.I236V 0.45 tolerated(0.06) possibly_damaging(0.743) TCGA-02-2485-01 2 185802513 185802513 G A ZNF804A Missense_Mutation p.R797K 0.43 tolerated(0.15) benign(0.038) TCGA-02-2485-01 2 226446958 226446958 C A NYAP2 Silent p.I275I 0.45 TCGA-02-2485-01 2 226446979 226446979 C T NYAP2 Silent p.D282D 0.40 TCGA-02-2485-01 2 238249201 238249201 G A COL6A3 Silent p.F2786F 0.45 TCGA-02-2485-01 2 27716857 27716857 G A FNDC4 Missense_Mutation p.R132W 0.05 deleterious(0.01) probably_damaging(0.973) TCGA-02-2485-01 2 90078224 90078224 G T IGKV3D-20 Silent p.G87G 0.28 TCGA-02-2485-01 3 15512054 15512054 G A COLQ Nonsense_Mutation p.R236* 0.42 TCGA-02-2485-01 3 178916921 178916921 A G PIK3CA Missense_Mutation p.E103G 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-02-2485-01 3 195395512 195395512 G A SDHAP2 Intron 0.17 TCGA-02-2485-01 3 3076350 3076350 C T CNTN4 Silent p.D606D 0.44 TCGA-02-2485-01 3 79639041 79639042 AG - ROBO1 Frame_Shift_Del p.P7Lfs*25 0.26 TCGA-02-2485-01 4 185940979 185940979 C T HELT Missense_Mutation p.P156S 0.17 tolerated(0.09) probably_damaging(0.947) TCGA-02-2485-01 5 101735262 101735262 G A SLCO6A1 Missense_Mutation p.T604M 0.33 tolerated(0.13) benign(0.01) TCGA-02-2485-01 5 137781275 137781275 G A REEP2 Silent p.A226A 0.46 TCGA-02-2485-01 5 140257259 140257259 G A PCDHA12 Silent p.P734P 0.23 TCGA-02-2485-01 5 179192466 179192466 C A MAML1 Missense_Mutation p.S152Y 0.45 deleterious(0) possibly_damaging(0.534) TCGA-02-2485-01 6 139487771 139487771 G A HECA Missense_Mutation p.E208K 0.45 tolerated(0.23) probably_damaging(0.992) TCGA-02-2485-01 6 15520428 15520428 C T JARID2 Silent p.P1229P 0.34 TCGA-02-2485-01 6 64004847 64004847 A C LGSN Missense_Mutation p.V45G 0.17 tolerated_low_confidence(0.37) benign(0.002) TCGA-02-2485-01 6 7583891 7583891 G A DSP Silent p.G2132G 0.43 TCGA-02-2485-01 7 102106371 102106371 C T LRWD1 Missense_Mutation p.P63L 0.34 deleterious(0) probably_damaging(1) TCGA-02-2485-01 7 136700738 136700738 A G CHRM2 Missense_Mutation p.K376E 0.32 deleterious(0.02) possibly_damaging(0.542) TCGA-02-2485-01 7 144059832 144059832 C A ARHGEF5 Missense_Mutation p.P24T 0.12 deleterious(0.01) possibly_damaging(0.651) TCGA-02-2485-01 7 30492358 30492358 G A NOD1 Silent p.D225D 0.38 TCGA-02-2485-01 7 38835094 38835094 G C VPS41 Missense_Mutation p.L230V 0.19 deleterious(0) possibly_damaging(0.54) TCGA-02-2485-01 7 53103860 53103860 G A POM121L12 Missense_Mutation p.A166T 0.77 tolerated(0.22) probably_damaging(0.913) TCGA-02-2485-01 7 53104151 53104151 G A POM121L12 Missense_Mutation p.A263T 0.12 deleterious_low_confidence(0.01) probably_damaging(0.913) TCGA-02-2485-01 7 55221822 55221822 C A EGFR Missense_Mutation p.A289D 0.94 deleterious(0) probably_damaging(0.986) TCGA-02-2485-01 8 1728862 1728862 T - CLN8 3'UTR 0.53 TCGA-02-2485-01 8 55541829 55541829 C T RP1 Missense_Mutation p.T1796M 0.35 deleterious(0.03) possibly_damaging(0.742) TCGA-02-2485-01 9 113243521 113243521 C G SVEP1 Splice_Site p.X789_splice 0.31 TCGA-02-2485-01 9 286571 286571 C T DOCK8 Silent p.D89D 0.47 TCGA-02-2485-01 X 125299891 125299891 G T DCAF12L2 Missense_Mutation p.T6K 0.61 deleterious_low_confidence(0.01) benign(0.24) TCGA-02-2485-01 X 12828240 12828240 T A PRPS2 Missense_Mutation p.S172T 0.90 deleterious(0.01) benign(0.439) TCGA-02-2485-01 X 48164232 48164232 T C SSX9 RNA 0.04 TCGA-02-2485-01 X 64949532 64949532 A G MSN Missense_Mutation p.H142R 0.90 deleterious(0) possibly_damaging(0.852) TCGA-02-2485-01 X 65486458 65486458 C T HEPH Missense_Mutation p.R1195C 0.15 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-02-2486-01 10 44874027 44874027 G T CXCL12 Intron 0.50 TCGA-02-2486-01 10 99683092 99683092 C T CRTAC1 Missense_Mutation p.D163N 0.06 tolerated(0.1) probably_damaging(0.936) TCGA-02-2486-01 11 102663439 102663439 C T MMP1 Silent p.P310P 0.34 TCGA-02-2486-01 11 123777647 123777647 G A OR8D4 Missense_Mutation p.G170E 0.35 tolerated(0.33) benign(0.052) TCGA-02-2486-01 11 4674216 4674216 C T OR51E1 Missense_Mutation p.R154W 0.31 deleterious(0) probably_damaging(1) TCGA-02-2486-01 11 50004010 50004010 A G OR4C12 Missense_Mutation p.F10L 0.24 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-02-2486-01 11 6807033 6807033 C G OR2AG1 Silent p.A255A 0.37 TCGA-02-2486-01 11 688025 688025 C T DEAF1 Missense_Mutation p.G184S 0.33 tolerated(0.33) possibly_damaging(0.856) TCGA-02-2486-01 12 100166859 100166859 G A ANKS1B Silent p.T323T 0.27 TCGA-02-2486-01 12 121880300 121880300 C T KDM2B Missense_Mutation p.E982K 0.28 deleterious_low_confidence(0.02) possibly_damaging(0.645) TCGA-02-2486-01 12 55794778 55794778 C G OR6C65 Missense_Mutation p.P156A 0.33 deleterious_low_confidence(0) probably_damaging(1) TCGA-02-2486-01 12 70793987 70793987 A - KCNMB4 Splice_Site p.X113_splice 0.27 TCGA-02-2486-01 13 28841518 28841518 A C PAN3 Missense_Mutation p.Y591S 0.32 tolerated(0.12) benign(0.064) TCGA-02-2486-01 13 32360537 32360537 C T RXFP2 Missense_Mutation p.T316M 0.39 tolerated(0.51) benign(0) TCGA-02-2486-01 14 106691920 106691920 C A IGHV3-21 Missense_Mutation p.G35V 0.25 deleterious_low_confidence(0) possibly_damaging(0.731) TCGA-02-2486-01 15 101013181 101013181 C T CERS3 Missense_Mutation p.R229H 0.28 deleterious(0) probably_damaging(1) TCGA-02-2486-01 15 92663774 92663774 A C SLCO3A1 Silent p.A363A 0.34 TCGA-02-2486-01 17 10212612 10212612 C T MYH13 Missense_Mutation p.R1703H 0.34 deleterious(0) probably_damaging(0.998) TCGA-02-2486-01 17 40458321 40458321 C T STAT5A Silent p.N512N 0.37 TCGA-02-2486-01 17 41888484 41888484 T G MPP3 Missense_Mutation p.N449H 0.28 tolerated(0.53) benign(0.114) TCGA-02-2486-01 18 31320334 31320334 G A ASXL3 Missense_Mutation p.R989Q 0.32 possibly_damaging(0.883) TCGA-02-2486-01 19 15132195 15132195 G A CCDC105 Missense_Mutation p.R302Q 0.34 tolerated(0.15) benign(0.114) TCGA-02-2486-01 19 19232455 19232455 T C TMEM161A Missense_Mutation p.I227V 0.41 tolerated(0.38) benign(0.009) TCGA-02-2486-01 19 50411934 50411934 G A NUP62 Silent p.R377R 0.36 TCGA-02-2486-01 1 12907709 12907709 C T HNRNPCL1 Missense_Mutation p.R145H 0.36 tolerated(0.11) benign(0.013) TCGA-02-2486-01 1 12907886 12907886 G A HNRNPCL1 Missense_Mutation p.A86V 0.16 tolerated(0.11) benign(0.082) TCGA-02-2486-01 1 155184421 155184421 G A MTX1 3'Flank 0.25 TCGA-02-2486-01 1 174417940 174417940 C T GPR52 Missense_Mutation p.R231C 0.34 deleterious(0) probably_damaging(0.932) TCGA-02-2486-01 1 200974537 200974537 G A KIF21B Missense_Mutation p.R211C 0.30 deleterious(0) probably_damaging(0.997) TCGA-02-2486-01 1 22216489 22216489 G A HSPG2 Nonsense_Mutation p.R187* 0.24 TCGA-02-2486-01 1 248525343 248525343 G A OR2T4 Missense_Mutation p.R154H 0.32 deleterious(0.02) benign(0.082) TCGA-02-2486-01 1 43396355 43396355 C T SLC2A1 Missense_Mutation p.R153H 0.38 deleterious(0) probably_damaging(1) TCGA-02-2486-01 1 51439609 51439610 - A CDKN2C Frame_Shift_Ins p.R59Kfs*4 0.38 TCGA-02-2486-01 20 13279712 13279712 C T ISM1 Missense_Mutation p.T334M 0.49 deleterious(0.01) probably_damaging(0.94) TCGA-02-2486-01 2 136567521 136567521 C T LCT Missense_Mutation p.R799H 0.34 tolerated(0.13) probably_damaging(0.954) TCGA-02-2486-01 2 170060768 170060768 G A LRP2 Missense_Mutation p.R2577C 0.37 possibly_damaging(0.537) TCGA-02-2486-01 2 27446562 27446562 A G CAD Missense_Mutation p.N314S 0.24 deleterious(0) probably_damaging(0.986) TCGA-02-2486-01 2 46803312 46803312 T A RHOQ Missense_Mutation p.F96L 0.34 deleterious(0.04) possibly_damaging(0.622) TCGA-02-2486-01 3 137484152 137484152 G A SOX14 Missense_Mutation p.A176T 0.25 tolerated(0.12) benign(0.034) TCGA-02-2486-01 3 142183989 142183989 C A ATR Missense_Mutation p.D2331Y 0.15 deleterious(0) probably_damaging(1) TCGA-02-2486-01 3 38739171 38739171 C T SCN10A Missense_Mutation p.R1847Q 0.55 deleterious(0.01) benign(0.426) TCGA-02-2486-01 3 42906816 42906816 G A ACKR2 Silent p.T274T 0.50 TCGA-02-2486-01 3 48463528 48463528 G A PLXNB1 Silent p.C502C 0.45 TCGA-02-2486-01 4 164271493 164271493 G A NPY5R Missense_Mutation p.R23Q 0.38 tolerated(0.34) benign(0.001) TCGA-02-2486-01 4 175897289 175897289 G A ADAM29 Missense_Mutation p.V205I 0.35 deleterious(0.04) probably_damaging(0.927) TCGA-02-2486-01 4 40800851 40800851 G T NSUN7 Nonsense_Mutation p.E444* 0.28 TCGA-02-2486-01 5 160721153 160721153 G A GABRB2 Missense_Mutation p.R492C 0.28 deleterious(0) probably_damaging(1) TCGA-02-2486-01 5 161113291 161113291 G T GABRA6 Missense_Mutation p.V32F 0.30 tolerated(0.58) benign(0.054) TCGA-02-2486-01 5 170222299 170222299 C T GABRP Missense_Mutation p.R110C 0.38 deleterious(0) probably_damaging(0.95) TCGA-02-2486-01 5 175110333 175110333 G A HRH2 Missense_Mutation p.V33I 0.32 tolerated(1) benign(0.002) TCGA-02-2486-01 5 55206410 55206410 C T IL31RA Nonsense_Mutation p.R518* 0.40 TCGA-02-2486-01 6 100062050 100062050 G A PRDM13 Silent p.G513G 0.42 TCGA-02-2486-01 6 107391831 107391831 G A BEND3 Silent p.N188N 0.43 TCGA-02-2486-01 6 134492161 134492161 G - SGK1 Frame_Shift_Del p.F441Lfs*12 0.23 TCGA-02-2486-01 6 138612912 138612912 C T KIAA1244 Silent p.S1030S 0.43 TCGA-02-2486-01 6 31079167 31079167 C A C6orf15 Missense_Mutation p.Q323H 0.06 deleterious(0) possibly_damaging(0.891) TCGA-02-2486-01 6 73787150 73787150 G A KCNQ5 Missense_Mutation p.R241H 0.39 deleterious(0.01) probably_damaging(0.997) TCGA-02-2486-01 7 129909521 129909521 A G CPA2 Missense_Mutation p.K56E 0.22 tolerated(0.07) benign(0.28) TCGA-02-2486-01 7 144060150 144060150 C A ARHGEF5 Missense_Mutation p.Q130K 0.10 deleterious(0.05) benign(0.251) TCGA-02-2486-01 7 150699008 150699008 C T NOS3 Silent p.Y534Y 0.30 TCGA-02-2486-01 7 23802525 23802525 C T STK31 Missense_Mutation p.R467C 0.22 deleterious(0) probably_damaging(0.999) TCGA-02-2486-01 7 37923916 37923916 C T NME8 Missense_Mutation p.R336C 0.25 deleterious(0.02) possibly_damaging(0.773) TCGA-02-2486-01 7 43360248 43360248 G A HECW1 Missense_Mutation p.E123K 0.20 tolerated(0.19) probably_damaging(0.998) TCGA-02-2486-01 7 76019569 76019569 C T SRCRB4D Missense_Mutation p.R512H 0.16 deleterious(0.04) benign(0.081) TCGA-02-2486-01 7 86521158 86521158 T A KIAA1324L Missense_Mutation p.E971V 0.16 deleterious(0) probably_damaging(0.989) TCGA-02-2486-01 7 99693629 99693629 G A MCM7 Missense_Mutation p.R455C 0.07 deleterious(0) probably_damaging(1) TCGA-02-2486-01 8 114326801 114326801 T A CSMD3 Missense_Mutation p.R134W 0.09 deleterious(0.03) probably_damaging(0.92) TCGA-02-2486-01 8 21608207 21608207 G A GFRA2 Silent p.C229C 0.45 TCGA-02-2486-01 8 53452429 53452429 C T FAM150A Missense_Mutation p.R96Q 0.52 deleterious(0) probably_damaging(0.998) TCGA-02-2486-01 9 112185070 112185070 C T PTPN3 Missense_Mutation p.R355Q 0.33 tolerated(0.09) benign(0.005) TCGA-02-2486-01 9 112900697 112900697 G A PALM2-AKAP2 Missense_Mutation p.R958Q 0.32 tolerated(0.08) probably_damaging(0.996) TCGA-02-2486-01 9 130678723 130678723 A C ST6GALNAC4 5'UTR 0.32 TCGA-02-2486-01 9 138377609 138377609 C A PPP1R26 Missense_Mutation p.T418N 0.35 tolerated(0.18) possibly_damaging(0.895) TCGA-02-2486-01 X 16142187 16142187 G A GRPR Silent p.P37P 0.68 TCGA-06-0119-01 11 34129864 34129864 A C NAT10 Missense_Mutation p.D31A 0.09 deleterious(0) possibly_damaging(0.703) TCGA-06-0119-01 11 55653246 55653246 G A TRIM51 Silent p.P114P 0.09 TCGA-06-0119-01 11 56086106 56086106 T G OR8K3 Missense_Mutation p.I108M 0.08 deleterious_low_confidence(0.02) benign(0.349) TCGA-06-0119-01 11 6023660 6023660 G A OR56A4 Missense_Mutation p.S240F 0.13 deleterious(0.01) possibly_damaging(0.847) TCGA-06-0119-01 11 68854047 68854047 A G TPCN2 Missense_Mutation p.N687S 0.12 deleterious(0.01) benign(0.439) TCGA-06-0119-01 12 101870666 101870666 C T SPIC 5'UTR 0.07 TCGA-06-0119-01 12 123200283 123200283 G A HCAR3 Silent p.D334D 0.11 TCGA-06-0119-01 12 21457447 21457447 C T SLCO1A2 Missense_Mutation p.R168H 0.11 deleterious(0) probably_damaging(0.999) TCGA-06-0119-01 12 31255360 31255360 G T DDX11 Splice_Site p.X758_splice 0.11 TCGA-06-0119-01 12 69124921 69124921 T C NUP107 Missense_Mutation p.I589T 0.10 deleterious(0) possibly_damaging(0.482) TCGA-06-0119-01 12 73014949 73014949 T A TRHDE Missense_Mutation p.F799Y 0.12 tolerated(0.4) benign(0.15) TCGA-06-0119-01 13 28592705 28592705 C T FLT3 Missense_Mutation p.A814T 0.11 deleterious(0) probably_damaging(1) TCGA-06-0119-01 14 75264755 75264755 G A YLPM1 Missense_Mutation p.V919I 0.15 benign(0.006) TCGA-06-0119-01 14 99866491 99866491 G A SETD3 Missense_Mutation p.T428I 0.14 deleterious(0.02) possibly_damaging(0.767) TCGA-06-0119-01 15 41820494 41820494 C T RPAP1 Missense_Mutation p.R400H 0.15 deleterious(0) probably_damaging(1) TCGA-06-0119-01 15 50534686 50534686 C A HDC Missense_Mutation p.C587F 0.11 deleterious_low_confidence(0) possibly_damaging(0.873) TCGA-06-0119-01 15 75647319 75647319 C A NEIL1 Silent p.R373R 0.07 TCGA-06-0119-01 17 27613998 27613998 T C NUFIP2 Silent p.K338K 0.12 TCGA-06-0119-01 17 29556163 29556163 C T NF1 Missense_Mutation p.L844F 0.19 deleterious(0) probably_damaging(0.986) TCGA-06-0119-01 17 34073181 34073181 G A GAS2L2 Silent p.A445A 0.11 TCGA-06-0119-01 17 38953242 38953242 C T KRT28 Missense_Mutation p.A302T 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-0119-01 17 56581411 56581411 C A MTMR4 Missense_Mutation p.M552I 0.17 tolerated(0.46) benign(0.003) TCGA-06-0119-01 17 56585838 56585838 C T MTMR4 Missense_Mutation p.S181N 0.10 tolerated(0.39) benign(0.003) TCGA-06-0119-01 17 61995152 61995152 C T GH1 Missense_Mutation p.D142N 0.10 tolerated(0.08) benign(0.033) TCGA-06-0119-01 17 62080238 62080238 C A ICAM2 Missense_Mutation p.V233L 0.06 tolerated(0.15) benign(0.061) TCGA-06-0119-01 17 72878745 72878745 C T FADS6 Silent p.T151T 0.25 TCGA-06-0119-01 17 78195495 78195495 C T SLC26A11 Nonsense_Mutation p.Q46* 0.24 TCGA-06-0119-01 17 8136310 8136310 C T CTC1 Missense_Mutation p.C620Y 0.07 tolerated(1) benign(0.006) TCGA-06-0119-01 19 17436028 17436028 G A ANO8 Silent p.S943S 0.12 TCGA-06-0119-01 19 1828079 1828079 G A REXO1 Missense_Mutation p.L237F 0.08 deleterious(0) probably_damaging(0.999) TCGA-06-0119-01 19 39303540 39303540 G A LGALS4 5'UTR 0.11 TCGA-06-0119-01 19 49564974 49564974 A C NTF4 Missense_Mutation p.L94R 0.15 deleterious(0) possibly_damaging(0.465) TCGA-06-0119-01 19 51466671 51466671 C T KLK6 Missense_Mutation p.R111H 0.16 tolerated(0.12) benign(0.016) TCGA-06-0119-01 19 55297992 55297992 C T KIR2DL1 3'Flank 0.16 TCGA-06-0119-01 19 58850588 58850588 C T ZSCAN22 Missense_Mutation p.H458Y 0.09 deleterious(0) probably_damaging(1) TCGA-06-0119-01 1 118624163 118624163 C G SPAG17 Missense_Mutation p.G622A 0.12 tolerated(0.06) benign(0.167) TCGA-06-0119-01 1 120438344 120438344 C G ADAM30 Missense_Mutation p.E206Q 0.12 deleterious(0) probably_damaging(0.997) TCGA-06-0119-01 1 174417320 174417320 G A GPR52 Missense_Mutation p.R24H 0.06 tolerated(0.25) benign(0) TCGA-06-0119-01 1 186056355 186056355 G A HMCN1 Missense_Mutation p.R3018Q 0.12 probably_damaging(0.993) TCGA-06-0119-01 1 230807312 230807312 G C COG2 Missense_Mutation p.M275I 0.16 tolerated(0.07) benign(0.091) TCGA-06-0119-01 1 233394169 233394169 T C PCNXL2 Missense_Mutation p.K480R 0.05 tolerated_low_confidence(0.16) benign(0.002) TCGA-06-0119-01 1 55266546 55266546 C T TTC22 Silent p.P97P 0.16 TCGA-06-0119-01 20 44979115 44979115 A G SLC35C2 Missense_Mutation p.L339P 0.09 deleterious(0.01) benign(0.036) TCGA-06-0119-01 20 48129691 48129691 G A PTGIS Nonsense_Mutation p.R378* 0.08 TCGA-06-0119-01 22 46657006 46657006 G A PKDREJ Silent p.I738I 0.15 TCGA-06-0119-01 2 103149074 103149074 C T SLC9A4 Missense_Mutation p.S775L 0.10 tolerated(0.2) benign(0.017) TCGA-06-0119-01 2 169985569 169985569 C T LRP2 Missense_Mutation p.R4585Q 0.08 probably_damaging(0.91) TCGA-06-0119-01 2 179463526 179463526 C T TTN Missense_Mutation p.V18971M 0.16 TCGA-06-0119-01 2 229890703 229890703 T C PID1 Missense_Mutation p.N131S 0.09 tolerated(0.1) benign(0.084) TCGA-06-0119-01 2 238285526 238285526 C T COL6A3 Missense_Mutation p.V987M 0.12 probably_damaging(0.998) TCGA-06-0119-01 2 27801373 27801373 T C C2orf16 Missense_Mutation p.V645A 0.15 tolerated(0.21) benign(0.107) TCGA-06-0119-01 3 53769408 53769408 G A CACNA1D Missense_Mutation p.V897I 0.14 tolerated(0.1) probably_damaging(0.994) TCGA-06-0119-01 3 9827096 9827096 G T TADA3 Missense_Mutation p.S275Y 0.08 deleterious(0.01) possibly_damaging(0.862) TCGA-06-0119-01 4 123200986 123200986 G T KIAA1109 Missense_Mutation p.G2883V 0.15 benign(0.24) TCGA-06-0119-01 4 164534555 164534555 C G MARCH1 Intron 0.12 TCGA-06-0119-01 4 70823297 70823297 G T CSN2 Missense_Mutation p.P124T 0.10 tolerated(0.16) possibly_damaging(0.908) TCGA-06-0119-01 5 140627258 140627258 G A PCDHB15 Silent p.S704S 0.11 TCGA-06-0119-01 5 143586570 143586570 A T KCTD16 Missense_Mutation p.D98V 0.20 deleterious(0) probably_damaging(1) TCGA-06-0119-01 5 5262847 5262847 C T ADAMTS16 Nonsense_Mutation p.R914* 0.10 TCGA-06-0119-01 6 128134889 128134889 G A THEMIS Silent p.S299S 0.12 TCGA-06-0119-01 6 142736934 142736934 A - GPR126 Frame_Shift_Del p.K891Nfs*11 0.16 TCGA-06-0119-01 6 25727558 25727558 T C HIST1H2BA 3'UTR 0.10 TCGA-06-0119-01 6 29364556 29364556 T C OR12D2 Missense_Mutation p.V27A 0.12 tolerated(0.38) benign(0.005) TCGA-06-0119-01 6 75840567 75840567 C T COL12A1 Splice_Site p.X2023_splice 0.07 TCGA-06-0119-01 7 143792582 143792582 C A OR2A12 Missense_Mutation p.P128T 0.12 deleterious(0) probably_damaging(0.97) TCGA-06-0119-01 7 55980343 55980343 A C ZNF713 5'UTR 0.16 TCGA-06-0119-01 7 83016344 83016344 G A SEMA3E Nonsense_Mutation p.R564* 0.11 TCGA-06-0119-01 7 94052404 94052404 G A COL1A2 Missense_Mutation p.G847S 0.08 unknown(0) TCGA-06-0119-01 8 144990758 144990758 C T PLEC Missense_Mutation p.A4548T 0.09 probably_damaging(0.98) TCGA-06-0119-01 8 27301729 27301729 C T PTK2B Nonsense_Mutation p.R719* 0.07 TCGA-06-0119-01 8 79590915 79590915 G A ZC2HC1A Splice_Site p.X70_splice 0.13 TCGA-06-0119-01 8 95403893 95403893 T A RAD54B Missense_Mutation p.I585L 0.11 deleterious(0.02) possibly_damaging(0.866) TCGA-06-0119-01 9 139092527 139092527 C A LHX3 Missense_Mutation p.W56L 0.20 deleterious(0) probably_damaging(0.916) TCGA-06-0119-01 9 86616796 86616796 C A RMI1 Missense_Mutation p.P299T 0.10 tolerated(0.62) benign(0.005) TCGA-06-0119-01 9 88952330 88952330 A T ZCCHC6 Intron 0.07 TCGA-06-0119-01 X 100240808 100240808 G A ARL13A Missense_Mutation p.V95I 0.19 deleterious(0.01) probably_damaging(1) TCGA-06-0119-01 X 100667805 100667805 G A HNRNPH2 Missense_Mutation p.G277R 0.07 tolerated(0.09) possibly_damaging(0.615) TCGA-06-0119-01 X 115586616 115586616 C T SLC6A14 Missense_Mutation p.T533M 0.16 deleterious(0) probably_damaging(0.971) TCGA-06-0119-01 X 119249400 119249400 T A RHOXF1 Missense_Mutation p.T125S 0.12 deleterious(0.04) possibly_damaging(0.458) TCGA-06-0119-01 X 153283486 153283486 C T IRAK1 Missense_Mutation p.G294S 0.11 deleterious(0) probably_damaging(1) TCGA-06-0119-01 X 2867744 2867744 C G ARSE Missense_Mutation p.C152S 0.10 deleterious(0) probably_damaging(0.991) TCGA-06-0119-01 X 30269233 30269233 T C MAGEB1 Missense_Mutation p.I208T 0.19 deleterious(0) probably_damaging(1) TCGA-06-0119-01 X 3235366 3235366 C T MXRA5 Missense_Mutation p.R2119H 0.19 tolerated(0.13) probably_damaging(0.96) TCGA-06-0119-01 X 34148878 34148878 C T FAM47A Silent p.S506S 0.19 TCGA-06-0119-01 X 46884151 46884151 G A JADE3 Missense_Mutation p.V104I 0.13 tolerated(0.33) benign(0.027) TCGA-06-0119-01 X 47041361 47041361 G A RBM10 Missense_Mutation p.V569I 0.19 tolerated(0.12) possibly_damaging(0.623) TCGA-06-0122-01 10 76855446 76855446 C T DUSP13 Missense_Mutation p.G144E 0.60 deleterious(0.04) benign(0.035) TCGA-06-0122-01 11 1264799 1264799 C A MUC5B Missense_Mutation p.P2230H 0.21 benign(0.184) TCGA-06-0122-01 11 129751720 129751720 G C NFRKB Nonsense_Mutation p.S432* 0.16 TCGA-06-0122-01 11 22291917 22291917 G T ANO5 Missense_Mutation p.S653I 0.40 deleterious(0.02) possibly_damaging(0.719) TCGA-06-0122-01 11 22747846 22747846 G A GAS2 Silent p.P92P 0.48 TCGA-06-0122-01 11 36596452 36596452 C T RAG1 Missense_Mutation p.T533I 0.36 deleterious_low_confidence(0.04) probably_damaging(0.995) TCGA-06-0122-01 11 48286015 48286015 C T OR4X1 Silent p.G201G 0.42 TCGA-06-0122-01 11 58125932 58125932 T - OR5B17 Frame_Shift_Del p.N204Mfs*10 0.23 TCGA-06-0122-01 11 6023920 6023920 G A OR56A4 Silent p.F153F 0.28 TCGA-06-0122-01 11 61647583 61647583 C T FADS3 Missense_Mutation p.R85H 0.09 deleterious(0.03) probably_damaging(1) TCGA-06-0122-01 11 6470286 6470286 C T TRIM3 Missense_Mutation p.C736Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-0122-01 11 67430672 67430672 G A ALDH3B2 3'UTR 0.33 TCGA-06-0122-01 11 77775138 77775138 G C THRSP Missense_Mutation p.D71H 0.36 deleterious(0) possibly_damaging(0.886) TCGA-06-0122-01 11 800589 800589 G A PIDD Silent p.G665G 0.41 TCGA-06-0122-01 11 82571019 82571019 C T PRCP Silent p.T124T 0.29 TCGA-06-0122-01 12 101336194 101336194 C T ANO4 Nonsense_Mutation p.R78* 0.30 TCGA-06-0122-01 12 115120889 115120889 C T TBX3 Silent p.P39P 0.42 TCGA-06-0122-01 12 120599821 120599821 C T GCN1L1 Silent p.P735P 0.30 TCGA-06-0122-01 12 53684176 53684176 G A ESPL1 Missense_Mutation p.A1763T 0.35 deleterious(0) benign(0.139) TCGA-06-0122-01 12 57598195 57598195 C T LRP1 Missense_Mutation p.R3652W 0.29 probably_damaging(0.993) TCGA-06-0122-01 13 100637979 100637979 C A ZIC2 3'UTR 0.27 TCGA-06-0122-01 14 19553823 19553823 G A POTEG Missense_Mutation p.R136H 0.11 tolerated(0.12) benign(0.003) TCGA-06-0122-01 14 38061527 38061527 G A FOXA1 Silent p.G154G 0.22 TCGA-06-0122-01 14 47426709 47426709 G A MDGA2 Missense_Mutation p.R653W 0.32 deleterious(0.01) possibly_damaging(0.849) TCGA-06-0122-01 14 94173118 94173118 G C UNC79 Missense_Mutation p.R2415S 0.20 tolerated(0.05) benign(0.167) TCGA-06-0122-01 14 94173139 94173139 G C UNC79 Missense_Mutation p.Q2422H 0.24 tolerated(0.12) probably_damaging(0.978) TCGA-06-0122-01 15 40751616 40751616 T C BAHD1 Missense_Mutation p.M318T 0.32 deleterious(0) probably_damaging(0.943) TCGA-06-0122-01 15 51507426 51507426 G A CYP19A1 Missense_Mutation p.R288C 0.34 tolerated(0.05) probably_damaging(0.989) TCGA-06-0122-01 15 65490345 65490345 C T CILP Missense_Mutation p.R760Q 0.38 tolerated(0.51) probably_damaging(0.99) TCGA-06-0122-01 15 72968569 72968569 T C HIGD2B Silent p.V49V 0.31 TCGA-06-0122-01 16 3642834 3642834 G A SLX4 Silent p.D731D 0.35 TCGA-06-0122-01 17 14110273 14110273 C T COX10 Missense_Mutation p.R359C 0.29 deleterious(0) probably_damaging(1) TCGA-06-0122-01 17 33849649 33849649 C T SLFN12L 5'UTR 0.25 TCGA-06-0122-01 17 35928904 35928904 C G SYNRG Missense_Mutation p.Q490H 0.30 deleterious(0.01) probably_damaging(0.953) TCGA-06-0122-01 17 39535345 39535345 G A KRT34 Silent p.N362N 0.35 TCGA-06-0122-01 17 7017626 7017626 G A ASGR2 5'UTR 0.50 TCGA-06-0122-01 17 73125017 73125017 C T ARMC7 Nonsense_Mutation p.Q161* 0.33 TCGA-06-0122-01 18 74962646 74962646 G A GALR1 Missense_Mutation p.V48M 0.23 tolerated(0.14) benign(0.354) TCGA-06-0122-01 18 9280962 9280962 A C ANKRD12 Missense_Mutation p.Q2009H 0.33 tolerated(0.08) probably_damaging(0.999) TCGA-06-0122-01 19 16612069 16612069 C T C19orf44 Missense_Mutation p.R156C 0.19 tolerated(0.21) benign(0.011) TCGA-06-0122-01 19 18779533 18779533 C T KLHL26 Silent p.Y442Y 0.21 TCGA-06-0122-01 19 36363501 36363501 C T APLP1 Missense_Mutation p.R323C 0.22 tolerated(0.1) probably_damaging(0.998) TCGA-06-0122-01 19 44933156 44933156 G A ZNF229 Silent p.Y600Y 0.24 TCGA-06-0122-01 19 50926144 50926144 G A SPIB Silent p.P63P 0.25 TCGA-06-0122-01 19 51630497 51630497 G A SIGLEC9 Missense_Mutation p.C320Y 0.31 deleterious(0) probably_damaging(1) TCGA-06-0122-01 19 58423432 58423432 C T ZNF417 Silent p.S53S 0.14 TCGA-06-0122-01 19 9213120 9213120 G C OR7G2 Nonsense_Mutation p.S288* 0.23 TCGA-06-0122-01 1 11174395 11174395 A T MTOR Missense_Mutation p.L2427Q 0.30 deleterious(0) probably_damaging(0.996) TCGA-06-0122-01 1 118548038 118548038 T G SPAG17 Missense_Mutation p.Q1592P 0.26 deleterious(0) probably_damaging(0.936) TCGA-06-0122-01 1 150239482 150239482 G A APH1A Missense_Mutation p.S201L 0.33 deleterious(0) possibly_damaging(0.897) TCGA-06-0122-01 1 152325713 152325713 G A FLG2 Missense_Mutation p.H1517Y 0.36 benign(0.039) TCGA-06-0122-01 1 161138221 161138221 G T PPOX Splice_Site p.X158_splice 0.34 TCGA-06-0122-01 1 186092143 186092143 C T HMCN1 Missense_Mutation p.T4097M 0.31 benign(0.031) TCGA-06-0122-01 1 19492180 19492180 C T UBR4 Missense_Mutation p.R1394H 0.37 probably_damaging(0.975) TCGA-06-0122-01 1 237811774 237811774 C T RYR2 Missense_Mutation p.A2458V 0.53 possibly_damaging(0.814) TCGA-06-0122-01 1 28362074 28362074 C T EYA3 Silent p.T114T 0.32 TCGA-06-0122-01 1 33960310 33960310 C T ZSCAN20 Missense_Mutation p.T789M 0.39 deleterious(0.05) benign(0.15) TCGA-06-0122-01 1 38227491 38227491 C T EPHA10 Missense_Mutation p.G146S 0.33 tolerated(0.1) benign(0.071) TCGA-06-0122-01 1 67194966 67194966 G A SGIP1 Missense_Mutation p.G588R 0.39 deleterious(0) probably_damaging(1) TCGA-06-0122-01 20 30584453 30584453 C T XKR7 Silent p.A311A 0.24 TCGA-06-0122-01 20 36869819 36869819 G C KIAA1755 Silent p.G238G 0.31 TCGA-06-0122-01 20 44506781 44506781 C G ZSWIM3 Silent p.G528G 0.31 TCGA-06-0122-01 20 51871857 51871857 C T TSHZ2 Silent p.H620H 0.19 TCGA-06-0122-01 22 33255261 33255261 A C TIMP3 Missense_Mutation p.Q178P 0.40 deleterious(0) probably_damaging(0.996) TCGA-06-0122-01 2 120369295 120369295 C T PCDP1 Missense_Mutation p.R430W 0.38 deleterious(0) probably_damaging(1) TCGA-06-0122-01 2 141072506 141072506 A G LRP1B Missense_Mutation p.L4268P 0.37 probably_damaging(0.928) TCGA-06-0122-01 2 165578701 165578701 G A COBLL1 Missense_Mutation p.R294W 0.38 deleterious(0) probably_damaging(1) TCGA-06-0122-01 2 166850847 166850847 T C SCN1A Missense_Mutation p.N1554S 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-06-0122-01 2 179476875 179476875 G C TTN Missense_Mutation p.P16755A 0.39 TCGA-06-0122-01 2 179597777 179597777 G A TTN Silent p.L5376L 0.31 TCGA-06-0122-01 2 179599243 179599243 G A TTN Missense_Mutation p.P5103L 0.30 TCGA-06-0122-01 2 219920562 219920562 G A IHH Silent p.G201G 0.27 TCGA-06-0122-01 2 220396799 220396799 G C ASIC4 Silent p.G395G 0.32 TCGA-06-0122-01 2 234602272 234602272 C T UGT1A6 Nonsense_Mutation p.R208* 0.37 TCGA-06-0122-01 2 37516578 37516578 G C PRKD3 Nonsense_Mutation p.S213* 0.38 TCGA-06-0122-01 3 186917654 186917654 G A RTP1 Silent p.E196E 0.25 TCGA-06-0122-01 3 98109856 98109856 C T OR5K3 Missense_Mutation p.A116V 0.32 tolerated(0.23) possibly_damaging(0.848) TCGA-06-0122-01 4 151505376 151505376 A C MAB21L2 3'UTR 0.33 TCGA-06-0122-01 5 140502131 140502131 A T PCDHB4 Missense_Mutation p.H184L 0.07 tolerated(0.07) benign(0.016) TCGA-06-0122-01 5 37051937 37051937 G - NIPBL Frame_Shift_Del p.A2338Lfs*8 0.17 TCGA-06-0122-01 5 45462085 45462085 C G HCN1 Missense_Mutation p.A292P 0.18 deleterious(0.01) probably_damaging(0.996) TCGA-06-0122-01 5 5262831 5262831 C A ADAMTS16 Missense_Mutation p.F908L 0.44 tolerated(0.24) benign(0.008) TCGA-06-0122-01 5 6737716 6737717 TG - PAPD7 Frame_Shift_Del p.V21Gfs*9 0.34 TCGA-06-0122-01 6 159206603 159206603 C A EZR Nonsense_Mutation p.E69* 0.39 TCGA-06-0122-01 6 9903644 9903644 G A OFCC1 Intron 0.31 TCGA-06-0122-01 7 115614228 115614228 C T TFEC Missense_Mutation p.R88K 0.29 tolerated(0.37) benign(0.003) TCGA-06-0122-01 7 147259316 147259316 C T CNTNAP2 Silent p.L622L 0.23 TCGA-06-0122-01 7 55588786 55588786 C T VOPP1 Missense_Mutation p.G31E 0.03 tolerated(0.1) probably_damaging(0.999) TCGA-06-0122-01 7 82390725 82390725 A G PCLO Missense_Mutation p.L5031P 0.48 unknown(0) TCGA-06-0122-01 7 82586181 82586181 G A PCLO Missense_Mutation p.T1363M 0.30 unknown(0) TCGA-06-0122-01 8 11842018 11842018 C G DEFB135 Missense_Mutation p.N51K 0.28 tolerated(0.46) benign(0.002) TCGA-06-0122-01 8 139890128 139890128 C T COL22A1 Missense_Mutation p.V175M 0.29 unknown(0) TCGA-06-0122-01 8 6793368 6793368 G C DEFA4 3'UTR 0.42 TCGA-06-0122-01 8 70667821 70667821 A T SLCO5A1 Missense_Mutation p.F366I 0.46 deleterious(0) possibly_damaging(0.781) TCGA-06-0122-01 8 73848476 73848476 G A KCNB2 Missense_Mutation p.V296M 0.61 tolerated(0.12) possibly_damaging(0.903) TCGA-06-0122-01 X 103349047 103349047 C T SLC25A53 Silent p.S298S 0.28 TCGA-06-0122-01 X 117033178 117033178 A T KLHL13 Missense_Mutation p.V557D 0.36 deleterious(0) probably_damaging(0.996) TCGA-06-0122-01 X 122820484 122820484 A G THOC2 Missense_Mutation p.F228L 0.34 deleterious(0) possibly_damaging(0.566) TCGA-06-0122-01 X 12817486 12817486 G A PRPS2 Missense_Mutation p.A95T 0.33 deleterious(0.01) possibly_damaging(0.853) TCGA-06-0122-01 X 30261308 30261308 T G MAGEB4 3'UTR 0.32 TCGA-06-0122-01 X 49142412 49142412 C G PPP1R3F Silent p.S420S 0.35 TCGA-06-0122-01 X 69262197 69262197 G A AWAT2 Silent p.D229D 0.36 TCGA-06-0122-01 X 73048999 73048999 C A XIST RNA 0.35 TCGA-06-0122-01 X 86873003 86873003 C T KLHL4 Nonsense_Mutation p.Q266* 0.41 TCGA-06-0124-01 10 103827534 103827534 C T HPS6 Missense_Mutation p.P768L 0.22 deleterious(0) possibly_damaging(0.851) TCGA-06-0124-01 10 35819172 35819172 G A CCNY Splice_Site p.X193_splice 0.54 TCGA-06-0124-01 10 89720679 89720679 C T PTEN Missense_Mutation p.T277I 0.50 deleterious(0) probably_damaging(0.929) TCGA-06-0124-01 11 113856764 113856764 G A HTR3A Missense_Mutation p.R197H 0.33 deleterious(0) probably_damaging(0.987) TCGA-06-0124-01 11 118074267 118074267 G A AMICA1 Silent p.D216D 0.29 TCGA-06-0124-01 11 2975821 2975821 C T NAP1L4 Missense_Mutation p.R324H 0.36 tolerated(0.06) benign(0.391) TCGA-06-0124-01 11 4510426 4510426 G C OR52K1 Missense_Mutation p.C99S 0.27 deleterious(0) possibly_damaging(0.881) TCGA-06-0124-01 12 10588555 10588555 C A KLRC2 Missense_Mutation p.V11L 0.11 tolerated(1) benign(0.001) TCGA-06-0124-01 12 43944924 43944924 G A ADAMTS20 Missense_Mutation p.R81C 0.23 deleterious(0) probably_damaging(0.988) TCGA-06-0124-01 12 6729601 6729601 G A LPAR5 Missense_Mutation p.R272C 0.33 tolerated(0.11) benign(0.064) TCGA-06-0124-01 12 7069104 7069104 G A PTPN6 Missense_Mutation p.R459H 0.26 deleterious(0) possibly_damaging(0.896) TCGA-06-0124-01 14 102028704 102028704 C T DIO3 Missense_Mutation p.R291C 0.31 deleterious(0) benign(0) TCGA-06-0124-01 14 22592233 22592233 C T TRAV26-1 Silent p.I106I 0.35 TCGA-06-0124-01 14 89336533 89336533 G T TTC8 Missense_Mutation p.R347L 0.28 tolerated(0.11) benign(0.058) TCGA-06-0124-01 16 30535933 30535933 C T ZNF768 Missense_Mutation p.E510K 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-06-0124-01 16 34712363 34712363 G C RP11-80F22.9 RNA 0.17 TCGA-06-0124-01 16 4836007 4836007 G A SEPT12 Missense_Mutation p.T89M 0.25 deleterious(0.01) probably_damaging(1) TCGA-06-0124-01 17 29662002 29662002 C T NF1 Nonsense_Mutation p.Q1987* 0.30 TCGA-06-0124-01 17 29667596 29667596 C A NF1 Nonsense_Mutation p.S2332* 0.33 TCGA-06-0124-01 17 36047245 36047245 G A HNF1B 3'UTR 0.23 TCGA-06-0124-01 17 3779601 3779601 G A CAMKK1 Silent p.D342D 0.27 TCGA-06-0124-01 17 39578641 39578641 C T KRT37 Missense_Mutation p.E260K 0.28 deleterious(0.02) benign(0.113) TCGA-06-0124-01 19 19337603 19337603 G C NCAN Missense_Mutation p.G461R 0.25 deleterious(0.05) possibly_damaging(0.523) TCGA-06-0124-01 19 3778279 3778279 C T MATK Missense_Mutation p.E477K 0.12 tolerated(0.33) probably_damaging(0.99) TCGA-06-0124-01 19 39591969 39591969 C T PAPL Nonsense_Mutation p.R339* 0.16 TCGA-06-0124-01 19 7831634 7831634 G A CLEC4M Missense_Mutation p.V293I 0.27 tolerated(0.56) benign(0.025) TCGA-06-0124-01 1 101197065 101197066 TA - VCAM1 Frame_Shift_Del p.Y506Cfs*46 0.22 TCGA-06-0124-01 1 104203270 104203270 G A AMY1A Missense_Mutation p.R358H 0.13 tolerated(0.52) benign(0.001) TCGA-06-0124-01 1 117159063 117159063 C T IGSF3 Silent p.Q20Q 0.26 TCGA-06-0124-01 1 152275657 152275657 G T FLG Missense_Mutation p.P3902H 0.32 unknown(0) TCGA-06-0124-01 1 169698774 169698774 G A SELE Silent p.F252F 0.25 TCGA-06-0124-01 1 21014370 21014370 G A KIF17 Silent p.S483S 0.27 TCGA-06-0124-01 1 42744223 42744223 C T FOXJ3 Silent p.K55K 0.27 TCGA-06-0124-01 1 45976906 45976906 G T PRDX1 3'UTR 0.35 TCGA-06-0124-01 20 947858 947858 G A RSPO4 Missense_Mutation p.P123L 0.35 deleterious(0) probably_damaging(1) TCGA-06-0124-01 21 14982928 14982928 G A POTED Missense_Mutation p.A127T 0.67 deleterious(0.03) probably_damaging(0.952) TCGA-06-0124-01 21 43291677 43291677 C T PRDM15 Missense_Mutation p.G156E 0.28 deleterious_low_confidence(0) benign(0.001) TCGA-06-0124-01 22 18274039 18274039 C A MICAL3 Silent p.L1893L 0.20 TCGA-06-0124-01 22 42458930 42458930 C G NAGA Silent p.L286L 0.28 TCGA-06-0124-01 22 46655208 46655208 T G PKDREJ Missense_Mutation p.T1338P 0.28 tolerated(0.09) possibly_damaging(0.828) TCGA-06-0124-01 2 128342397 128342399 CAA - MYO7B In_Frame_Del p.N535del 0.36 TCGA-06-0124-01 2 176973927 176973927 C G HOXD11 3'UTR 0.30 TCGA-06-0124-01 2 21239331 21239331 G A APOB Silent p.V1104V 0.36 TCGA-06-0124-01 2 71058942 71058942 C G CD207 Silent p.L242L 0.31 TCGA-06-0124-01 2 98351172 98351172 G A ZAP70 Missense_Mutation p.R360H 0.22 deleterious(0.01) probably_damaging(0.91) TCGA-06-0124-01 3 108754309 108754309 C T MORC1 Missense_Mutation p.R446K 0.22 tolerated(0.29) benign(0.101) TCGA-06-0124-01 4 175896931 175896931 C T ADAM29 Silent p.D85D 0.28 TCGA-06-0124-01 4 25125641 25125641 T C SEPSECS Missense_Mutation p.Y473C 0.28 tolerated_low_confidence(0.11) benign(0.001) TCGA-06-0124-01 4 25664233 25664236 AAGT - SLC34A2 Splice_Site p.X38_splice 0.34 TCGA-06-0124-01 5 1208942 1208942 G A SLC6A19 Missense_Mutation p.R95Q 0.29 deleterious(0.01) probably_damaging(0.929) TCGA-06-0124-01 5 131042146 131042146 C T FNIP1 Missense_Mutation p.R291H 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-06-0124-01 5 140256419 140256419 G A PCDHA12 Silent p.A454A 0.25 TCGA-06-0124-01 5 17275409 17275409 C T BASP1 Silent p.G28G 0.24 TCGA-06-0124-01 5 177690250 177690250 C T COL23A1 Missense_Mutation p.D200N 0.19 tolerated(0.32) unknown(0) TCGA-06-0124-01 5 45262205 45262205 C A HCN1 Missense_Mutation p.G831C 0.23 tolerated_low_confidence(0.18) benign(0.339) TCGA-06-0124-01 5 82808046 82808046 T A VCAN Missense_Mutation p.F291L 0.34 tolerated(0.06) possibly_damaging(0.824) TCGA-06-0124-01 6 117243268 117243268 C A RFX6 Missense_Mutation p.A464D 0.28 tolerated(0.1) benign(0.027) TCGA-06-0124-01 6 128388894 128388894 T C PTPRK Missense_Mutation p.K643E 0.28 deleterious(0.03) benign(0.085) TCGA-06-0124-01 6 37336605 37336605 G A RNF8 Missense_Mutation p.A196T 0.31 tolerated(0.13) benign(0.006) TCGA-06-0124-01 6 42937419 42937419 G A PEX6 Missense_Mutation p.R452C 0.27 tolerated(0.06) possibly_damaging(0.462) TCGA-06-0124-01 7 100681607 100681607 G C MUC17 Missense_Mutation p.V2304L 0.19 unknown(0) TCGA-06-0124-01 7 103130205 103130205 G A RELN Silent p.C3249C 0.18 TCGA-06-0124-01 7 142569333 142569333 G A TRPV6 3'UTR 0.25 TCGA-06-0124-01 7 23682773 23682773 A C CCDC126 3'UTR 0.16 TCGA-06-0124-01 7 72093938 72093938 G A TYW1B Silent p.N143N 0.11 TCGA-06-0124-01 7 7572525 7572525 A G COL28A1 5'UTR 0.20 TCGA-06-0124-01 8 104930679 104930679 C T RIMS2 Nonsense_Mutation p.R683* 0.22 TCGA-06-0124-01 8 105264036 105264036 C A RIMS2 Nonsense_Mutation p.Y1346* 0.33 TCGA-06-0124-01 8 24365011 24365011 T A ADAM7 Missense_Mutation p.S743T 0.33 tolerated_low_confidence(0.16) benign(0.009) TCGA-06-0124-01 8 24365012 24365012 C A ADAM7 Nonsense_Mutation p.S743* 0.34 TCGA-06-0124-01 8 25158172 25158172 C G DOCK5 Missense_Mutation p.T282R 0.18 deleterious(0) benign(0.398) TCGA-06-0124-01 8 25715990 25715990 G A EBF2 Missense_Mutation p.P458L 0.33 deleterious_low_confidence(0.04) probably_damaging(0.988) TCGA-06-0124-01 8 72948651 72948651 C A TRPA1 Missense_Mutation p.W809C 0.29 deleterious(0) probably_damaging(1) TCGA-06-0124-01 9 124535257 124535257 C T DAB2IP Missense_Mutation p.P789L 0.25 tolerated(0.44) probably_damaging(0.944) TCGA-06-0124-01 9 125004210 125004210 T A RBM18 Nonsense_Mutation p.K176* 0.27 TCGA-06-0124-01 9 125004227 125004227 A C RBM18 Missense_Mutation p.F170C 0.27 tolerated(0.18) benign(0.43) TCGA-06-0124-01 9 2039586 2039586 G A SMARCA2 Missense_Mutation p.G159D 0.35 probably_damaging(0.996) TCGA-06-0124-01 9 40715885 40715885 G A FAM74A3 RNA 0.47 TCGA-06-0125-01 10 104678301 104678301 C G CNNM2 Missense_Mutation p.L22V 0.75 tolerated_low_confidence(0.27) benign(0.364) TCGA-06-0125-01 10 50835688 50835688 G A CHAT Missense_Mutation p.R323H 0.81 deleterious(0.04) probably_damaging(0.976) TCGA-06-0125-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.77 TCGA-06-0125-01 10 95447159 95447159 A G FRA10AC1 Splice_Site p.X171_splice 0.18 TCGA-06-0125-01 11 12901370 12901370 C T TEAD1 Missense_Mutation p.T149I 0.34 tolerated(0.19) benign(0.037) TCGA-06-0125-01 11 4790251 4790251 T A OR51F1 Missense_Mutation p.K299N 0.41 deleterious(0.01) possibly_damaging(0.77) TCGA-06-0125-01 11 55681774 55681774 A G OR5W2 Silent p.Y95Y 0.49 TCGA-06-0125-01 11 56237921 56237921 C T OR5M3 Missense_Mutation p.R18H 0.05 tolerated(0.38) benign(0) TCGA-06-0125-01 11 66084085 66084085 G A CD248 Silent p.G138G 0.43 TCGA-06-0125-01 12 52964563 52964563 C T KRT74 Missense_Mutation p.D300N 0.29 deleterious(0) probably_damaging(0.99) TCGA-06-0125-01 12 7177424 7177424 G A C1S Silent p.P512P 0.53 TCGA-06-0125-01 12 9254170 9254170 T C A2M Missense_Mutation p.K456R 0.60 tolerated(0.16) benign(0.003) TCGA-06-0125-01 13 28644701 28644701 G A FLT3 Missense_Mutation p.P31L 0.45 tolerated_low_confidence(0.18) benign(0.013) TCGA-06-0125-01 14 105420774 105420774 C T AHNAK2 Silent p.S338S 0.52 TCGA-06-0125-01 14 105517549 105517549 C T GPR132 Missense_Mutation p.V309M 0.39 tolerated(0.06) possibly_damaging(0.593) TCGA-06-0125-01 14 50550652 50550652 C T C14orf183 Missense_Mutation p.R231H 0.39 tolerated_low_confidence(0.76) possibly_damaging(0.715) TCGA-06-0125-01 14 88478002 88478002 A T GPR65 Missense_Mutation p.M271L 0.41 tolerated(0.41) benign(0.003) TCGA-06-0125-01 14 94845837 94845837 G A SERPINA1 Silent p.S343S 0.39 TCGA-06-0125-01 14 96152931 96152931 C T TCL1B Missense_Mutation p.R43C 0.56 tolerated(0.06) benign(0.156) TCGA-06-0125-01 16 15835524 15835524 C T MYH11 Silent p.L892L 0.40 TCGA-06-0125-01 16 58538057 58538057 G C NDRG4 Splice_Site p.X95_splice 0.38 TCGA-06-0125-01 16 80646527 80646527 G A CDYL2 Missense_Mutation p.A405V 0.40 deleterious(0.01) probably_damaging(0.984) TCGA-06-0125-01 17 47284767 47284767 G A GNGT2 Silent p.S6S 0.42 TCGA-06-0125-01 18 67508667 67508667 G A DOK6 3'UTR 0.49 TCGA-06-0125-01 18 77227543 77227543 C T NFATC1 Nonsense_Mutation p.R672* 0.17 TCGA-06-0125-01 19 11598332 11598332 C T ZNF653 Missense_Mutation p.G316S 0.31 tolerated(0.14) benign(0.215) TCGA-06-0125-01 19 37383097 37383097 A G ZNF829 Missense_Mutation p.V280A 0.31 deleterious(0.01) probably_damaging(0.98) TCGA-06-0125-01 19 45781188 45781188 G A MARK4 Missense_Mutation p.R265Q 0.29 deleterious(0.01) probably_damaging(0.994) TCGA-06-0125-01 19 47960816 47960816 C T SLC8A2 Silent p.P237P 0.19 TCGA-06-0125-01 19 49933892 49933892 C T SLC17A7 Missense_Mutation p.E523K 0.26 tolerated(0.1) benign(0.017) TCGA-06-0125-01 19 51958738 51958738 G A SIGLEC8 Nonsense_Mutation p.R329* 0.30 TCGA-06-0125-01 19 53994691 53994691 G A ZNF813 Missense_Mutation p.R402H 0.30 tolerated(0.2) benign(0.009) TCGA-06-0125-01 19 58723898 58723898 C T ZNF274 Missense_Mutation p.R450C 0.26 tolerated(0.17) probably_damaging(0.966) TCGA-06-0125-01 19 9087317 9087317 A G MUC16 Missense_Mutation p.S1500P 0.33 unknown(0) TCGA-06-0125-01 1 236720633 236720633 C T HEATR1 Silent p.S1739S 0.32 TCGA-06-0125-01 1 237540686 237540686 G A RYR2 Missense_Mutation p.R176Q 0.43 benign(0.171) TCGA-06-0125-01 1 247712377 247712377 C T GCSAML 5'Flank 0.41 TCGA-06-0125-01 1 26314754 26314754 C G PAFAH2 Missense_Mutation p.L103F 0.37 deleterious(0.01) probably_damaging(1) TCGA-06-0125-01 1 26315958 26315958 C T PAFAH2 Silent p.L75L 0.27 TCGA-06-0125-01 1 31194146 31194146 C A MATN1 Intron 0.07 TCGA-06-0125-01 1 9211778 9211781 CTTA - MIR34A RNA 0.44 TCGA-06-0125-01 20 18576672 18576672 C T DTD1 Missense_Mutation p.R53C 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-0125-01 20 30585031 30585031 G A XKR7 Missense_Mutation p.R504Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-0125-01 20 31386409 31386409 G A DNMT3B Missense_Mutation p.R545H 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-06-0125-01 20 42089538 42089538 G C SRSF6 Missense_Mutation p.K290N 0.09 tolerated(0.11) unknown(0) TCGA-06-0125-01 20 62737203 62737203 G A NPBWR2 Missense_Mutation p.R328C 0.29 tolerated(0.1) benign(0.003) TCGA-06-0125-01 2 189859003 189859003 G A COL3A1 Missense_Mutation p.R413Q 0.33 unknown(0) TCGA-06-0125-01 2 233347307 233347307 G A ECEL1 Missense_Mutation p.P566L 0.46 deleterious(0.01) probably_damaging(0.997) TCGA-06-0125-01 2 27306459 27306459 G A EMILIN1 Missense_Mutation p.D674N 0.44 probably_damaging(0.998) TCGA-06-0125-01 2 95519296 95519296 G A ANKRD20A8P RNA 0.36 TCGA-06-0125-01 3 13679191 13679191 G A FBLN2 Silent p.A1156A 0.39 TCGA-06-0125-01 3 137717704 137717704 C T CLDN18 5'UTR 0.44 TCGA-06-0125-01 3 138739098 138739098 C T PRR23B Missense_Mutation p.V136I 0.35 tolerated(0.29) benign(0.112) TCGA-06-0125-01 3 151045981 151045981 T C P2RY13 Missense_Mutation p.D288G 0.40 deleterious(0.05) benign(0.078) TCGA-06-0125-01 3 156271443 156271444 - TTGTGCTTG SSR3 In_Frame_Ins p.H86_K87insNKH 0.23 TCGA-06-0125-01 3 196736682 196736682 C T MFI2 Silent p.P444P 0.33 TCGA-06-0125-01 3 44929232 44929232 C T TGM4 Missense_Mutation p.T82M 0.35 tolerated(0.05) possibly_damaging(0.681) TCGA-06-0125-01 3 53756373 53756373 G A CACNA1D Missense_Mutation p.R533H 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-06-0125-01 4 175649758 175649758 G A GLRA3 Missense_Mutation p.P120L 0.40 deleterious(0.03) benign(0.199) TCGA-06-0125-01 4 55968556 55968556 C - KDR Frame_Shift_Del p.D703Ifs*6 0.33 TCGA-06-0125-01 5 143853420 143853420 C T KCTD16 Missense_Mutation p.R344C 0.50 deleterious(0.01) probably_damaging(0.996) TCGA-06-0125-01 5 161944 161944 G A PLEKHG4B Missense_Mutation p.R489H 0.35 tolerated(0.15) benign(0.001) TCGA-06-0125-01 5 36035828 36035828 C T UGT3A2 Missense_Mutation p.R515H 0.34 tolerated(0.24) possibly_damaging(0.475) TCGA-06-0125-01 6 30228382 30228382 C T HCG17 Intron 0.06 TCGA-06-0125-01 6 56457035 56457035 G C DST Missense_Mutation p.S1660C 0.36 possibly_damaging(0.729) TCGA-06-0125-01 7 104782492 104782492 T C SRPK2 Silent p.R502R 0.24 TCGA-06-0125-01 7 138441286 138441286 C G ATP6V0A4 Splice_Site p.X214_splice 0.32 TCGA-06-0125-01 7 140156627 140156627 A T MKRN1 Missense_Mutation p.F271I 0.24 deleterious(0) possibly_damaging(0.758) TCGA-06-0125-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.73 deleterious(0) possibly_damaging(0.75) TCGA-06-0125-01 7 72849409 72849409 T A FZD9 Missense_Mutation p.F358I 0.34 deleterious(0) possibly_damaging(0.833) TCGA-06-0125-01 8 22458597 22458597 C T C8orf58 Silent p.A81A 0.42 TCGA-06-0125-01 8 25156484 25156484 C T DOCK5 Missense_Mutation p.R211W 0.27 deleterious(0.04) benign(0.013) TCGA-06-0125-01 9 98209358 98209358 G A PTCH1 Nonsense_Mutation p.R1394* 0.51 TCGA-06-0125-01 X 103499199 103499199 G A ESX1 Missense_Mutation p.R48W 0.42 deleterious_low_confidence(0.03) benign(0.428) TCGA-06-0125-01 X 105451028 105451028 A C MUM1L1 Missense_Mutation p.M535L 0.42 tolerated(1) benign(0.009) TCGA-06-0125-01 X 118219419 118219419 T A KIAA1210 Missense_Mutation p.H1592L 0.07 tolerated(0.54) benign(0.055) TCGA-06-0125-01 X 135570275 135570275 T G BRS3 Translation_Start_Site p.M1? 0.36 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-06-0125-01 X 26212934 26212934 T A MAGEB6 Missense_Mutation p.I324N 0.41 deleterious(0) possibly_damaging(0.825) TCGA-06-0125-01 X 2826829 2826829 C T ARSD Silent p.S451S 0.50 TCGA-06-0125-01 X 34150200 34150200 C T FAM47A Missense_Mutation p.E66K 0.43 tolerated(0.07) probably_damaging(0.921) TCGA-06-0125-01 X 48976107 48976107 G A GPKOW Missense_Mutation p.R173W 0.41 deleterious(0) probably_damaging(0.997) TCGA-06-0125-01 X 54949888 54949888 G A TRO Missense_Mutation p.R308K 0.44 tolerated(1) unknown(0) TCGA-06-0126-01 10 112350834 112350834 A G SMC3 Missense_Mutation p.T586A 0.77 deleterious(0.01) probably_damaging(0.941) TCGA-06-0126-01 10 25313145 25313145 G A THNSL1 Silent p.R331R 0.68 TCGA-06-0126-01 11 118962836 118962836 T G HMBS Missense_Mutation p.I205S 0.39 tolerated(0.06) benign(0.12) TCGA-06-0126-01 11 36614899 36614899 C A RAG2 Missense_Mutation p.V274F 0.37 deleterious(0.04) probably_damaging(0.985) TCGA-06-0126-01 11 73964552 73964552 T C PPME1 Silent p.C386C 0.34 TCGA-06-0126-01 12 109288048 109288048 G A DAO Missense_Mutation p.E173K 0.34 tolerated(0.82) benign(0.003) TCGA-06-0126-01 12 5963280 5963280 G A ANO2 Missense_Mutation p.R184W 0.32 deleterious(0) probably_damaging(1) TCGA-06-0126-01 12 91497971 91497971 G A LUM Missense_Mutation p.R330C 0.37 deleterious(0.01) possibly_damaging(0.714) TCGA-06-0126-01 13 67800099 67800099 A T PCDH9 Missense_Mutation p.V825E 0.39 deleterious(0.01) possibly_damaging(0.777) TCGA-06-0126-01 14 105477589 105477589 G A CDCA4 Silent p.S226S 0.33 TCGA-06-0126-01 14 20612258 20612258 C T OR4N5 Missense_Mutation p.R122C 0.41 deleterious(0.03) benign(0.028) TCGA-06-0126-01 15 33923466 33923466 G A RYR3 Missense_Mutation p.D947N 0.33 benign(0.002) TCGA-06-0126-01 15 34130001 34130002 - A RYR3 Frame_Shift_Ins p.E3943Rfs*18 0.31 TCGA-06-0126-01 15 40282488 40282488 G A EIF2AK4 Silent p.R847R 0.32 TCGA-06-0126-01 15 56208834 56208834 C T NEDD4 Missense_Mutation p.V66I 0.36 tolerated_low_confidence(0.67) benign(0.002) TCGA-06-0126-01 15 58247360 58247360 G A ALDH1A2 3'UTR 0.37 TCGA-06-0126-01 16 23226531 23226531 G A SCNN1G Missense_Mutation p.R564H 0.37 tolerated(0.57) benign(0.003) TCGA-06-0126-01 16 53289572 53289572 A G CHD9 Missense_Mutation p.I1364V 0.37 probably_damaging(0.94) TCGA-06-0126-01 16 56623482 56623482 C G MT3 5'UTR 0.40 TCGA-06-0126-01 16 66946751 66946751 G T CDH16 Silent p.P366P 0.31 TCGA-06-0126-01 16 81968079 81968079 G A PLCG2 Missense_Mutation p.E929K 0.33 deleterious(0) possibly_damaging(0.653) TCGA-06-0126-01 17 41019767 41019767 C T AOC4P RNA 0.28 TCGA-06-0126-01 17 43246862 43246862 C T HEXIM2 Nonsense_Mutation p.R183* 0.33 TCGA-06-0126-01 17 62272375 62272375 C A TEX2 Missense_Mutation p.E575D 0.38 tolerated(0.19) possibly_damaging(0.54) TCGA-06-0126-01 18 56963867 56963867 G A CPLX4 3'UTR 0.33 TCGA-06-0126-01 19 18731283 18731283 G A TMEM59L Silent p.P322P 0.32 TCGA-06-0126-01 19 40398286 40398286 C T FCGBP Silent p.G2227G 0.15 TCGA-06-0126-01 19 53377300 53377300 G A ZNF320 3'Flank 0.20 TCGA-06-0126-01 19 58579144 58579144 T G ZNF135 Missense_Mutation p.I455S 0.23 deleterious(0.02) possibly_damaging(0.845) TCGA-06-0126-01 19 9085127 9085127 A G MUC16 Missense_Mutation p.S2230P 0.28 unknown(0) TCGA-06-0126-01 19 9213088 9213088 A T OR7G2 Missense_Mutation p.Y299N 0.25 deleterious(0) probably_damaging(1) TCGA-06-0126-01 1 12253032 12253032 A C TNFRSF1B Missense_Mutation p.T222P 0.47 tolerated(0.22) benign(0.02) TCGA-06-0126-01 1 152326339 152326339 C T FLG2 Missense_Mutation p.R1308H 0.41 benign(0) TCGA-06-0126-01 1 157068567 157068567 G T ETV3L Silent p.S139S 0.42 TCGA-06-0126-01 1 161043074 161043074 C T PVRL4 Missense_Mutation p.G417R 0.31 tolerated(0.6) possibly_damaging(0.535) TCGA-06-0126-01 1 192547487 192547487 C G RGS1 Missense_Mutation p.A139G 0.44 deleterious(0.01) benign(0.11) TCGA-06-0126-01 1 36752347 36752347 T C THRAP3 Silent p.S172S 0.38 TCGA-06-0126-01 1 57383364 57383364 G A C8A Missense_Mutation p.R577Q 0.33 tolerated(0.19) benign(0.075) TCGA-06-0126-01 1 67412089 67412089 G T MIER1 Intron 0.33 TCGA-06-0126-01 1 67412091 67412091 C A MIER1 Intron 0.32 TCGA-06-0126-01 1 85331129 85331142 ACTTGTATGCGGAG - LPAR3 Frame_Shift_Del p.S221Wfs*107 0.45 TCGA-06-0126-01 1 85648703 85648703 C T SYDE2 Missense_Mutation p.R541Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-0126-01 21 43708133 43708133 C T ABCG1 Missense_Mutation p.R370W 0.31 deleterious(0.02) benign(0.2) TCGA-06-0126-01 22 36960345 36960345 G A CACNG2 3'UTR 0.27 TCGA-06-0126-01 22 42276831 42276831 C T SREBF2 Missense_Mutation p.R625C 0.35 deleterious(0) probably_damaging(0.991) TCGA-06-0126-01 2 179452825 179452825 C A TTN Missense_Mutation p.M21103I 0.39 TCGA-06-0126-01 2 179527465 179527465 G A TTN Missense_Mutation p.R12289C 0.42 TCGA-06-0126-01 2 31756490 31756490 T C AL133247.2 Intron 0.21 TCGA-06-0126-01 3 112693785 112693785 C A CD200R1 5'UTR 0.38 TCGA-06-0126-01 3 183665250 183665250 C T ABCC5 Silent p.T1092T 0.30 TCGA-06-0126-01 3 3078881 3078881 G T CNTN4 Missense_Mutation p.G654V 0.33 deleterious(0) probably_damaging(1) TCGA-06-0126-01 3 46785604 46785604 C T PRSS45 Missense_Mutation p.G47D 0.15 deleterious(0) possibly_damaging(0.449) TCGA-06-0126-01 3 95374371 95374371 G A MTHFD2P1 RNA 0.38 TCGA-06-0126-01 4 155490927 155490927 C T FGB Missense_Mutation p.T407M 0.35 deleterious(0) probably_damaging(1) TCGA-06-0126-01 4 158234012 158234012 C T GRIA2 Silent p.N217N 0.32 TCGA-06-0126-01 4 160251077 160251077 T G RAPGEF2 Missense_Mutation p.V245G 0.45 deleterious(0.02) probably_damaging(0.968) TCGA-06-0126-01 4 186545050 186545050 G A SORBS2 Silent p.P607P 0.39 TCGA-06-0126-01 4 3768581 3768581 G A ADRA2C Missense_Mutation p.R83H 0.30 deleterious(0.03) probably_damaging(0.987) TCGA-06-0126-01 4 70148376 70148376 C A UGT2B28 Missense_Mutation p.P289H 0.39 deleterious(0.02) benign(0.138) TCGA-06-0126-01 5 13916467 13916467 A G DNAH5 Missense_Mutation p.L396P 0.39 probably_damaging(0.928) TCGA-06-0126-01 5 180166818 180166818 G A OR2Y1 Missense_Mutation p.L81F 0.35 deleterious(0.04) probably_damaging(1) TCGA-06-0126-01 5 41049516 41049516 G T MROH2B Missense_Mutation p.T456N 0.39 tolerated(0.29) benign(0.026) TCGA-06-0126-01 6 151914390 151914390 C T CCDC170 Missense_Mutation p.T481I 0.30 deleterious(0.04) possibly_damaging(0.899) TCGA-06-0126-01 6 63990671 63990671 C T LGSN Missense_Mutation p.R262K 0.36 tolerated(0.54) possibly_damaging(0.565) TCGA-06-0126-01 6 7602909 7602909 G T SNRNP48 Missense_Mutation p.D217Y 0.38 deleterious(0) probably_damaging(1) TCGA-06-0126-01 7 142511002 142511002 C T TRBV30 5'UTR 0.30 TCGA-06-0126-01 7 23163411 23163411 G A KLHL7 Missense_Mutation p.V46M 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-0126-01 7 42977165 42977165 C T MRPL32 Missense_Mutation p.T186I 0.30 tolerated(0.05) benign(0.103) TCGA-06-0126-01 7 70886068 70886068 C T WBSCR17 Silent p.A313A 0.32 TCGA-06-0126-01 7 86468552 86468552 C T GRM3 Silent p.D574D 0.36 TCGA-06-0126-01 7 94054953 94054953 G A COL1A2 Missense_Mutation p.R938H 0.24 unknown(0) TCGA-06-0126-01 8 124243741 124243743 AAG - C8orf76 In_Frame_Del p.F205del 0.47 TCGA-06-0126-01 8 15967580 15967580 G T MSR1 3'UTR 0.33 TCGA-06-0126-01 9 101908855 101908855 G A TGFBR1 Missense_Mutation p.V407I 0.41 tolerated(0.29) probably_damaging(0.979) TCGA-06-0126-01 9 117092750 117092750 C A ORM2 Silent p.R51R 0.52 TCGA-06-0126-01 9 27158007 27158007 T A TEK Missense_Mutation p.D77E 0.40 tolerated(0.07) possibly_damaging(0.75) TCGA-06-0126-01 9 90585711 90585711 G A CDK20 Silent p.Y160Y 0.36 TCGA-06-0126-01 X 15402129 15402129 T C FIGF 5'UTR 0.90 TCGA-06-0128-01 10 7745275 7745275 T G ITIH2 5'UTR 0.12 TCGA-06-0128-01 11 119212361 119212361 T G MFRP Missense_Mutation p.E546A 0.25 deleterious(0.02) probably_damaging(1) TCGA-06-0128-01 11 56143674 56143674 C T OR8U1 Missense_Mutation p.T192I 0.05 deleterious(0.04) benign(0.443) TCGA-06-0128-01 11 60164186 60164186 G T MS4A14 Missense_Mutation p.L45F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-06-0128-01 11 6622635 6622635 C G RRP8 Missense_Mutation p.E221Q 0.19 deleterious(0.04) possibly_damaging(0.701) TCGA-06-0128-01 11 68822263 68822263 A G TPCN2 Silent p.Q83Q 0.24 TCGA-06-0128-01 12 20790147 20790147 A G PDE3A Silent p.R705R 0.37 TCGA-06-0128-01 13 23912431 23912431 T C SACS Missense_Mutation p.T1862A 0.37 benign(0) TCGA-06-0128-01 13 28851372 28851372 A G PAN3 Splice_Site p.X684_splice 0.14 TCGA-06-0128-01 14 31081472 31081472 C G G2E3 Nonsense_Mutation p.Y520* 0.14 TCGA-06-0128-01 14 55451511 55451511 T G WDHD1 Missense_Mutation p.Q612H 0.61 deleterious(0.01) probably_damaging(0.94) TCGA-06-0128-01 15 57554312 57554313 CT - TCF12 Frame_Shift_Del p.S497Cfs*12 0.34 TCGA-06-0128-01 15 57555309 57555309 G C TCF12 Splice_Site p.X528_splice 0.35 TCGA-06-0128-01 15 81592468 81592469 - C IL16 Frame_Shift_Ins p.G937Wfs*14 0.37 TCGA-06-0128-01 16 1129388 1129388 C A SSTR5 Missense_Mutation p.L174I 0.52 tolerated(0.86) benign(0.364) TCGA-06-0128-01 16 1470457 1470457 C T C16orf91 Silent p.S220S 0.14 TCGA-06-0128-01 16 202974 202974 C T HBZ Silent p.A22A 0.24 TCGA-06-0128-01 16 20370764 20370764 G A PDILT Silent p.Y544Y 0.38 TCGA-06-0128-01 16 31470871 31470871 C A ARMC5 Missense_Mutation p.T9K 0.46 tolerated(0.06) unknown(0) TCGA-06-0128-01 16 3165347 3165347 C G ZNF205 Intron 0.11 TCGA-06-0128-01 17 39538605 39538605 G - KRT34 Frame_Shift_Del p.P7Hfs*7 0.23 TCGA-06-0128-01 17 4337372 4337372 G A SPNS3 Nonsense_Mutation p.W37* 0.39 TCGA-06-0128-01 17 74004095 74004095 G A EVPL Missense_Mutation p.P1731S 0.47 tolerated(0.06) probably_damaging(0.941) TCGA-06-0128-01 17 7576910 7576910 G - TP53 Frame_Shift_Del p.S313Afs*32 0.51 TCGA-06-0128-01 18 54694330 54694330 G A WDR7 Silent p.A1455A 0.05 TCGA-06-0128-01 19 11943173 11943173 A C ZNF440 Missense_Mutation p.K394N 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-06-0128-01 19 35941689 35941689 C G FFAR2 3'UTR 0.25 TCGA-06-0128-01 19 45315773 45315773 A G BCAM Missense_Mutation p.T158A 0.07 tolerated(0.28) benign(0.289) TCGA-06-0128-01 19 52249805 52249805 C T FPR1 Missense_Mutation p.G148E 0.09 deleterious(0.02) possibly_damaging(0.905) TCGA-06-0128-01 19 52394411 52394411 G C ZNF649 Silent p.G326G 0.14 TCGA-06-0128-01 19 52394423 52394423 T C ZNF649 Silent p.E322E 0.16 TCGA-06-0128-01 19 58290731 58290731 A G ZNF586 Missense_Mutation p.E259G 0.41 deleterious(0.01) probably_damaging(0.916) TCGA-06-0128-01 19 6707242 6707242 C T C3 Missense_Mutation p.G697D 0.08 deleterious(0) probably_damaging(0.999) TCGA-06-0128-01 1 145558859 145558859 G A ANKRD35 Missense_Mutation p.A160T 0.42 deleterious(0) probably_damaging(0.948) TCGA-06-0128-01 1 153640926 153640926 T C ILF2 Intron 0.15 TCGA-06-0128-01 1 205632669 205632669 G A SLC45A3 Missense_Mutation p.R84C 0.39 deleterious(0.02) probably_damaging(1) TCGA-06-0128-01 1 242048792 242048792 A G EXO1 Silent p.K796K 0.42 TCGA-06-0128-01 1 8403928 8403928 C T SLC45A1 Missense_Mutation p.A701V 0.15 tolerated(0.72) benign(0.005) TCGA-06-0128-01 1 91405171 91405171 G C ZNF644 Silent p.S580S 0.37 TCGA-06-0128-01 20 31368258 31368258 C T DNMT3B Silent p.T43T 0.07 TCGA-06-0128-01 20 46307466 46307466 C T SULF2 Missense_Mutation p.G383R 0.44 deleterious(0.01) probably_damaging(0.918) TCGA-06-0128-01 21 19638284 19638284 A G CHODL Missense_Mutation p.K251E 0.08 tolerated(0.14) benign(0.341) TCGA-06-0128-01 22 26291213 26291213 C T MYO18B Missense_Mutation p.S1545L 0.44 deleterious(0.04) possibly_damaging(0.905) TCGA-06-0128-01 22 30738811 30738811 G A SF3A1 Nonsense_Mutation p.R237* 0.11 TCGA-06-0128-01 22 38016850 38016850 A G GGA1 Missense_Mutation p.D153G 0.32 tolerated(0.21) benign(0.16) TCGA-06-0128-01 2 158626971 158626971 G A ACVR1 Silent p.A233A 0.44 TCGA-06-0128-01 2 179575886 179575886 A C TTN Missense_Mutation p.N9359K 0.08 TCGA-06-0128-01 2 183860521 183860521 T C NCKAP1 Missense_Mutation p.R223G 0.39 deleterious(0) benign(0.395) TCGA-06-0128-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.42 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-06-0128-01 2 219128407 219128410 CAGC - GPBAR1 Frame_Shift_Del p.S321Kfs*8 0.39 TCGA-06-0128-01 2 242147068 242147068 G A ANO7 Missense_Mutation p.A408T 0.29 tolerated(0.84) benign(0.019) TCGA-06-0128-01 2 29158460 29158460 C T WDR43 Missense_Mutation p.P504L 0.22 tolerated(0.13) probably_damaging(0.924) TCGA-06-0128-01 2 33809769 33809769 T G FAM98A 3'UTR 0.12 TCGA-06-0128-01 2 43804328 43804328 A T THADA Missense_Mutation p.F290L 0.23 tolerated(0.64) benign(0.004) TCGA-06-0128-01 2 44528234 44528234 G C SLC3A1 Missense_Mutation p.M368I 0.10 tolerated(0.11) benign(0.192) TCGA-06-0128-01 3 124438292 124438292 T C RP11-71H17.7 5'Flank 0.08 TCGA-06-0128-01 3 130174391 130174391 C T COL6A5 Missense_Mutation p.T2224M 0.06 tolerated_low_confidence(0.07) benign(0) TCGA-06-0128-01 3 142188272 142188272 G A ATR Silent p.H2153H 0.21 TCGA-06-0128-01 3 14862089 14862089 A G FGD5 Missense_Mutation p.E504G 0.09 deleterious(0) possibly_damaging(0.787) TCGA-06-0128-01 3 183700632 183700632 C G ABCC5 Missense_Mutation p.G252A 0.35 tolerated(0.53) possibly_damaging(0.627) TCGA-06-0128-01 4 175897388 175897388 G C ADAM29 Missense_Mutation p.V238L 0.10 tolerated(0.73) benign(0.065) TCGA-06-0128-01 4 20547701 20547701 A G SLIT2 Missense_Mutation p.N775S 0.25 tolerated(0.84) benign(0.016) TCGA-06-0128-01 4 55958819 55958819 C T KDR Missense_Mutation p.V1012M 0.05 deleterious(0) probably_damaging(1) TCGA-06-0128-01 4 68784796 68784796 T G TMPRSS11A Missense_Mutation p.T286P 0.12 tolerated(0.28) benign(0.019) TCGA-06-0128-01 5 140222411 140222411 G A PCDHA8 Missense_Mutation p.R502H 0.14 deleterious_low_confidence(0.01) benign(0.214) TCGA-06-0128-01 5 140480219 140480219 G A PCDHB3 5'Flank 0.33 TCGA-06-0128-01 5 167553791 167553791 G A TENM2 Missense_Mutation p.V748I 0.15 tolerated(0.18) benign(0.081) TCGA-06-0128-01 5 67589138 67589138 G C PIK3R1 Missense_Mutation p.G376R 0.05 deleterious(0) probably_damaging(1) TCGA-06-0128-01 6 109752491 109752491 G A PPIL6 Nonsense_Mutation p.Q97* 0.09 TCGA-06-0128-01 7 113519285 113519285 C A PPP1R3A Missense_Mutation p.R621I 0.27 deleterious(0) benign(0.04) TCGA-06-0128-01 7 27142031 27142031 T A HOXA2 Missense_Mutation p.D30V 0.12 deleterious(0) probably_damaging(0.959) TCGA-06-0128-01 7 77797372 77797372 A T MAGI2 Silent p.L819L 0.32 TCGA-06-0128-01 8 15519674 15519674 T C TUSC3 Missense_Mutation p.F193L 0.39 tolerated(0.37) benign(0.063) TCGA-06-0128-01 9 119461599 119461599 C T TRIM32 Silent p.T526T 0.32 TCGA-06-0128-01 9 27949442 27949443 - T LINGO2 Frame_Shift_Ins p.P410Tfs*5 0.11 TCGA-06-0128-01 X 48337070 48337070 T C FTSJ1 Missense_Mutation p.V86A 0.08 tolerated(0.05) benign(0.039) TCGA-06-0129-01 10 25464326 25464328 CCT - GPR158 5'UTR 0.47 TCGA-06-0129-01 10 99696002 99696002 C T CRTAC1 Missense_Mutation p.G116R 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-0129-01 11 108382300 108382300 C T EXPH5 Missense_Mutation p.E1312K 0.26 tolerated(0.13) benign(0.046) TCGA-06-0129-01 11 544759 544759 G A LRRC56 Missense_Mutation p.G102D 0.61 tolerated(0.1) benign(0.132) TCGA-06-0129-01 11 62995959 62995959 G A SLC22A25 Silent p.G160G 0.44 TCGA-06-0129-01 11 85375242 85375244 CTT - CREBZF In_Frame_Del p.K226del 0.41 TCGA-06-0129-01 12 123346052 123346052 G A HIP1R Silent p.Q1050Q 0.12 TCGA-06-0129-01 12 27059333 27059333 G T ASUN Silent p.I661I 0.12 TCGA-06-0129-01 12 40668431 40668431 C G LRRK2 Missense_Mutation p.S568C 0.21 tolerated(0.13) possibly_damaging(0.572) TCGA-06-0129-01 12 56638930 56638930 A G ANKRD52 Missense_Mutation p.S817P 0.42 tolerated(0.23) benign(0.4) TCGA-06-0129-01 12 56639372 56639372 A C ANKRD52 Silent p.T731T 0.54 TCGA-06-0129-01 12 68647046 68647046 C G IL22 Missense_Mutation p.K61N 0.35 tolerated(0.08) benign(0.015) TCGA-06-0129-01 12 98926946 98926946 T A TMPO Nonsense_Mutation p.L304* 0.18 TCGA-06-0129-01 13 102047697 102047697 C T NALCN Missense_Mutation p.R43H 0.14 deleterious(0) probably_damaging(0.985) TCGA-06-0129-01 14 20295961 20295961 G A OR4N2 Missense_Mutation p.M118I 0.05 deleterious(0) probably_damaging(0.995) TCGA-06-0129-01 14 22458952 22458952 G C TRAV16 Missense_Mutation p.G35A 0.42 deleterious(0.03) possibly_damaging(0.789) TCGA-06-0129-01 14 39703346 39703348 CTT - MIA2 In_Frame_Del p.L12del 0.40 TCGA-06-0129-01 16 3163414 3163414 C G ZNF205 5'UTR 0.53 TCGA-06-0129-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.95 deleterious(0) probably_damaging(1) TCGA-06-0129-01 19 16593572 16593572 C T CALR3 Missense_Mutation p.A235T 0.48 tolerated(0.14) benign(0.088) TCGA-06-0129-01 19 37310870 37310870 G A ZNF790 Nonsense_Mutation p.Q126* 0.42 TCGA-06-0129-01 19 52033694 52033694 C T SIGLEC6 Missense_Mutation p.A251T 0.22 tolerated(1) benign(0) TCGA-06-0129-01 1 12726313 12726313 G A AADACL4 Missense_Mutation p.R264H 0.46 tolerated(0.16) benign(0.022) TCGA-06-0129-01 1 150550855 150550856 GA - MCL1 Frame_Shift_Del p.L267Hfs*9 0.19 TCGA-06-0129-01 1 204507404 204507404 C G MDM4 Missense_Mutation p.T160S 0.39 tolerated(0.05) benign(0.028) TCGA-06-0129-01 1 207868047 207868047 G T CR1L Missense_Mutation p.K271N 0.14 tolerated(0.09) benign(0.041) TCGA-06-0129-01 1 216052218 216052218 T G USH2A Missense_Mutation p.T2816P 0.44 probably_damaging(1) TCGA-06-0129-01 20 34084435 34084436 AG - CEP250 Frame_Shift_Del p.R1067Tfs*8 0.31 TCGA-06-0129-01 20 77035 77035 C T DEFB125 Nonsense_Mutation p.Q150* 0.47 TCGA-06-0129-01 22 35783113 35783113 G A HMOX1 Missense_Mutation p.A194T 0.47 deleterious(0.04) benign(0.001) TCGA-06-0129-01 22 36745230 36745232 TGA - MYH9 In_Frame_Del p.I17del 0.77 TCGA-06-0129-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.31 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-06-0129-01 2 9547680 9547681 AC - ITGB1BP1 Frame_Shift_Del p.C143Lfs*3 0.14 TCGA-06-0129-01 2 96583626 96583626 T C ANKRD36C Missense_Mutation p.K775R 0.11 deleterious_low_confidence(0.03) benign(0.301) TCGA-06-0129-01 3 126268815 126268815 G A C3orf22 Missense_Mutation p.R108C 0.17 tolerated(0.18) benign(0.272) TCGA-06-0129-01 3 142841108 142841108 C T CHST2 Missense_Mutation p.R484W 0.15 deleterious(0) probably_damaging(0.998) TCGA-06-0129-01 4 10446518 10446518 C T ZNF518B Missense_Mutation p.V479I 0.48 tolerated(0.51) benign(0.001) TCGA-06-0129-01 4 2661629 2661629 C T FAM193A Silent p.L240L 0.21 TCGA-06-0129-01 4 437518 437518 C G ZNF721 Missense_Mutation p.E246D 0.16 deleterious(0.03) benign(0.295) TCGA-06-0129-01 4 56750010 56750010 C T EXOC1 Nonsense_Mutation p.R416* 0.17 TCGA-06-0129-01 5 127420118 127420118 G C SLC12A2 Missense_Mutation p.D158H 0.47 deleterious(0.02) benign(0.28) TCGA-06-0129-01 5 150050115 150050115 G A MYOZ3 Missense_Mutation p.R44H 0.26 tolerated(0.09) possibly_damaging(0.832) TCGA-06-0129-01 5 67591126 67591127 GA - PIK3R1 Frame_Shift_Del p.R574Kfs*27 0.33 TCGA-06-0129-01 6 123101455 123101455 G A FABP7 Silent p.R31R 0.12 TCGA-06-0129-01 6 32809494 32809494 C T PSMB8 Missense_Mutation p.V186M 0.23 deleterious(0) probably_damaging(0.988) TCGA-06-0129-01 7 95657586 95657586 C T DYNC1I1 Nonsense_Mutation p.R374* 0.20 TCGA-06-0129-01 X 1584564 1584564 C T P2RY8 Silent p.A296A 0.25 TCGA-06-0129-01 X 76938089 76938092 TCTC - ATRX Frame_Shift_Del p.E886Lfs*18 0.83 TCGA-06-0130-01 11 418746 418746 G A ANO9 Missense_Mutation p.R702C 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-06-0130-01 11 4411651 4411651 C T TRIM21 5'UTR 0.05 TCGA-06-0130-01 12 66725048 66725048 G T HELB Nonsense_Mutation p.E929* 0.25 TCGA-06-0130-01 13 49039505 49039505 G T RB1 Splice_Site p.X830_splice 0.28 TCGA-06-0130-01 14 58605421 58605421 T - C14orf37 Frame_Shift_Del p.N219Ifs*42 0.17 TCGA-06-0130-01 15 43658653 43658653 G A ZSCAN29 Missense_Mutation p.R293W 0.24 deleterious(0) probably_damaging(0.97) TCGA-06-0130-01 15 89859689 89859689 A C FANCI Nonstop_Mutation p.*1329Sext*6 0.40 TCGA-06-0130-01 16 75563927 75563927 C T CHST5 Missense_Mutation p.R119H 0.24 tolerated(0.06) probably_damaging(0.998) TCGA-06-0130-01 16 75670442 75670442 C G KARS Missense_Mutation p.R159T 0.23 deleterious(0) probably_damaging(0.991) TCGA-06-0130-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.32 tolerated(0.1) benign(0.438) TCGA-06-0130-01 17 76488831 76488831 T A DNAH17 Missense_Mutation p.N2128I 0.26 benign(0.021) TCGA-06-0130-01 19 15989675 15989675 C T CYP4F2 Missense_Mutation p.R490H 0.08 tolerated(0.08) possibly_damaging(0.483) TCGA-06-0130-01 19 53014344 53014344 G T ZNF578 Missense_Mutation p.G237V 0.13 deleterious(0.03) probably_damaging(0.95) TCGA-06-0130-01 19 53886404 53886404 A G ZNF525 3'UTR 0.18 TCGA-06-0130-01 19 54875933 54875933 G A LAIR1 Silent p.L13L 0.24 TCGA-06-0130-01 1 11897130 11897130 G C CLCN6 Missense_Mutation p.E685D 0.19 tolerated(0.33) benign(0.184) TCGA-06-0130-01 1 17723572 17723572 G A PADI6 RNA 0.17 TCGA-06-0130-01 1 181700365 181700365 C A CACNA1E Missense_Mutation p.H765Q 0.16 tolerated(0.44) benign(0.227) TCGA-06-0130-01 1 34035009 34035009 T C CSMD2 Missense_Mutation p.N2701S 0.21 tolerated(0.4) possibly_damaging(0.773) TCGA-06-0130-01 1 37948728 37948728 G A ZC3H12A Missense_Mutation p.G439D 0.06 deleterious(0) probably_damaging(1) TCGA-06-0130-01 20 16496298 16496298 G A KIF16B Silent p.T81T 0.11 TCGA-06-0130-01 20 3003414 3003414 G A PTPRA Missense_Mutation p.V470M 0.24 deleterious(0.03) possibly_damaging(0.747) TCGA-06-0130-01 20 44181787 44181787 T C WFDC8 Missense_Mutation p.R192G 0.19 tolerated(0.29) benign(0.004) TCGA-06-0130-01 21 10951271 10951271 T A TPTE Silent p.V147V 0.12 TCGA-06-0130-01 2 179458768 179458768 C T TTN Missense_Mutation p.R19451H 0.26 TCGA-06-0130-01 2 198267698 198267698 C T SF3B1 Missense_Mutation p.R594Q 0.08 deleterious(0.02) probably_damaging(0.973) TCGA-06-0130-01 3 39307436 39307436 C T CX3CR1 Missense_Mutation p.V221M 0.20 tolerated(0.19) probably_damaging(0.953) TCGA-06-0130-01 3 45077251 45077251 C T CLEC3B Silent p.T148T 0.11 TCGA-06-0130-01 4 154517485 154517485 G A KIAA0922 Missense_Mutation p.V691I 0.21 deleterious(0.01) probably_damaging(0.993) TCGA-06-0130-01 4 48140944 48140944 C T TEC Missense_Mutation p.S544N 0.28 deleterious(0.01) possibly_damaging(0.502) TCGA-06-0130-01 5 93856069 93856069 T G KIAA0825 Missense_Mutation p.E285A 0.23 tolerated(0.07) probably_damaging(0.999) TCGA-06-0130-01 6 75797410 75797410 G A COL12A1 Missense_Mutation p.P3022S 0.24 probably_damaging(0.998) TCGA-06-0130-01 7 130139717 130139717 T A MEST Silent p.G179G 0.18 TCGA-06-0130-01 7 143632696 143632696 T G OR2F2 Missense_Mutation p.V124G 0.11 deleterious(0) possibly_damaging(0.594) TCGA-06-0130-01 8 117955025 117955025 G A AARD 3'UTR 0.31 TCGA-06-0130-01 8 124518764 124518764 C T FBXO32 Silent p.L234L 0.10 TCGA-06-0130-01 9 84607173 84607173 A G SPATA31D1 Silent p.L596L 0.19 TCGA-06-0130-01 X 73071415 73071415 C T XIST RNA 0.42 TCGA-06-0130-01 Y 8657096 8657096 A G TTTY11 RNA 0.11 TCGA-06-0132-01 11 119031668 119031668 C T ABCG4 Missense_Mutation p.P598L 0.13 tolerated(0.32) benign(0.001) TCGA-06-0132-01 11 46396532 46396532 C G DGKZ Missense_Mutation p.D737E 0.06 tolerated(0.09) probably_damaging(0.954) TCGA-06-0132-01 12 3387673 3387673 G A TSPAN9 Silent p.S50S 0.06 TCGA-06-0132-01 12 55524385 55524385 G A OR9K2 Missense_Mutation p.G278D 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-0132-01 14 94953819 94953819 C T SERPINA12 Missense_Mutation p.A356T 0.17 deleterious(0) probably_damaging(1) TCGA-06-0132-01 19 33892682 33892682 G A PEPD Silent p.A304A 0.11 TCGA-06-0132-01 19 54313742 54313742 C T NLRP12 Missense_Mutation p.V391M 0.11 tolerated(0.08) benign(0.117) TCGA-06-0132-01 1 109964523 109964523 C T PSMA5 Missense_Mutation p.G19R 0.15 deleterious(0) probably_damaging(1) TCGA-06-0132-01 1 118640437 118640437 T C SPAG17 Missense_Mutation p.I289M 0.12 deleterious(0.04) benign(0.069) TCGA-06-0132-01 1 161682911 161682911 C T FCRLA Missense_Mutation p.P297L 0.09 deleterious(0) possibly_damaging(0.77) TCGA-06-0132-01 1 6271141 6271141 C T RNF207 Missense_Mutation p.P358S 0.11 tolerated(0.16) benign(0.027) TCGA-06-0132-01 1 7723936 7723936 C T CAMTA1 Silent p.A443A 0.08 TCGA-06-0132-01 1 7723997 7723997 C T CAMTA1 Silent p.L464L 0.14 TCGA-06-0132-01 2 149248058 149248058 C T MBD5 Silent p.G1386G 0.14 TCGA-06-0132-01 2 166019113 166019113 T A SCN3A Missense_Mutation p.N307I 0.08 deleterious(0.02) benign(0.074) TCGA-06-0132-01 2 167055670 167055670 C A SCN9A Missense_Mutation p.D1816Y 0.12 deleterious(0) probably_damaging(1) TCGA-06-0132-01 2 32530586 32530586 G A YIPF4 Missense_Mutation p.S209N 0.10 deleterious(0) probably_damaging(0.911) TCGA-06-0132-01 2 73315741 73315741 C T RAB11FIP5 Silent p.S335S 0.17 TCGA-06-0132-01 3 114069362 114069362 G - ZBTB20 Frame_Shift_Del p.K522Sfs*19 0.13 TCGA-06-0132-01 3 383663 383663 G A CHL1 Missense_Mutation p.V193M 0.14 deleterious(0.01) probably_damaging(1) TCGA-06-0132-01 4 167656159 167656159 A G SPOCK3 Silent p.I408I 0.15 TCGA-06-0132-01 5 140229589 140229589 G A PCDHA9 Silent p.S503S 0.10 TCGA-06-0132-01 7 107591684 107591684 G A LAMB1 Silent p.D1126D 0.15 TCGA-06-0132-01 9 114840947 114840947 T C SUSD1 Missense_Mutation p.N542D 0.17 tolerated(0.06) probably_damaging(0.997) TCGA-06-0132-01 9 71555697 71555697 A C PIP5K1B Missense_Mutation p.Y498S 0.14 tolerated_low_confidence(0.33) benign(0.007) TCGA-06-0132-01 X 125299499 125299499 G A DCAF12L2 Missense_Mutation p.R137W 0.05 deleterious(0.01) possibly_damaging(0.762) TCGA-06-0132-01 X 36103467 36103467 G A CHDC2 Silent p.S151S 0.17 TCGA-06-0132-01 X 47422686 47422686 G A ARAF Missense_Mutation p.G53D 0.18 deleterious(0.01) probably_damaging(1) TCGA-06-0137-01 11 35227763 35227763 C T CD44 Nonsense_Mutation p.R463* 0.44 TCGA-06-0137-01 11 4511035 4511035 G A OR52K1 Missense_Mutation p.R302H 0.05 deleterious(0.02) benign(0.02) TCGA-06-0137-01 11 4790947 4790947 C A OR51F1 Missense_Mutation p.R67S 0.40 deleterious(0) benign(0.016) TCGA-06-0137-01 11 55065011 55065011 C A TRIM51HP RNA 0.20 TCGA-06-0137-01 11 5530815 5530815 G T UBQLN3 5'UTR 0.27 TCGA-06-0137-01 11 55339695 55339695 G A OR4C16 Missense_Mutation p.R31H 0.38 deleterious(0.02) benign(0.008) TCGA-06-0137-01 11 71906672 71906672 G A FOLR1 Missense_Mutation p.R125H 0.44 deleterious(0) possibly_damaging(0.523) TCGA-06-0137-01 12 109293195 109293195 C T DAO Missense_Mutation p.R286C 0.50 deleterious(0) probably_damaging(0.998) TCGA-06-0137-01 12 117768667 117768667 G A NOS1 Missense_Mutation p.R70W 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.719) TCGA-06-0137-01 12 18576934 18576934 G A PIK3C2G Missense_Mutation p.R781H 0.27 deleterious(0.01) benign(0.248) TCGA-06-0137-01 12 40012537 40012538 - A ABCD2 Frame_Shift_Ins p.Y294Lfs*20 0.28 TCGA-06-0137-01 12 96354263 96354263 C T AMDHD1 Silent p.H225H 0.46 TCGA-06-0137-01 14 101492407 101492407 G A MIR758 RNA 0.47 TCGA-06-0137-01 14 107114036 107114036 C T IGHV3-64 Missense_Mutation p.C20Y 0.36 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-06-0137-01 14 23855760 23855760 C T MYH6 Missense_Mutation p.E1575K 0.46 deleterious(0) possibly_damaging(0.713) TCGA-06-0137-01 14 51080061 51080061 C T ATL1 Missense_Mutation p.R239C 0.36 deleterious(0) benign(0.38) TCGA-06-0137-01 15 21051264 21051264 C A POTEB2 Missense_Mutation p.G399V 0.21 deleterious(0.01) benign(0.193) TCGA-06-0137-01 15 33895522 33895522 C T RYR3 Silent p.D707D 0.40 TCGA-06-0137-01 15 40583828 40583828 C T PLCB2 Missense_Mutation p.E876K 0.33 tolerated(0.24) benign(0.049) TCGA-06-0137-01 16 20787173 20787173 C A ACSM3 Missense_Mutation p.P78T 0.39 deleterious(0.02) benign(0.006) TCGA-06-0137-01 16 31338227 31338227 C A ITGAM Missense_Mutation p.N894K 0.37 tolerated(0.06) benign(0.012) TCGA-06-0137-01 16 66957764 66957764 G A RRAD Silent p.Y143Y 0.40 TCGA-06-0137-01 16 75564091 75564091 G A CHST5 Silent p.H64H 0.50 TCGA-06-0137-01 16 7726795 7726795 G A RBFOX1 Missense_Mutation p.R338H 0.43 deleterious(0) possibly_damaging(0.894) TCGA-06-0137-01 17 25748064 25748064 G T TBC1D3P5 RNA 0.55 TCGA-06-0137-01 17 51900728 51900728 G A KIF2B Missense_Mutation p.A112T 0.41 tolerated(0.2) benign(0.002) TCGA-06-0137-01 17 80332605 80332605 C T UTS2R Silent p.H135H 0.52 TCGA-06-0137-01 18 14537857 14537857 A G POTEC Silent p.D251D 0.41 TCGA-06-0137-01 18 59158011 59158011 C T CDH20 Silent p.T75T 0.06 TCGA-06-0137-01 18 71790685 71790685 G A FBXO15 Silent p.H352H 0.05 TCGA-06-0137-01 19 11559740 11559740 G A PRKCSH Missense_Mutation p.R426H 0.32 deleterious(0) probably_damaging(1) TCGA-06-0137-01 19 11917007 11917007 G A ZNF491 Missense_Mutation p.R80H 0.33 deleterious(0.03) benign(0.01) TCGA-06-0137-01 19 16259656 16259656 C T HSH2D Intron 0.33 TCGA-06-0137-01 19 42341249 42341249 C T LYPD4 Missense_Mutation p.V237I 0.25 deleterious(0.04) benign(0.002) TCGA-06-0137-01 19 43430081 43430081 G C PSG7 Missense_Mutation p.Q363E 0.04 tolerated(1) benign(0.004) TCGA-06-0137-01 19 53960192 53960192 G A ZNF761 RNA 0.17 TCGA-06-0137-01 19 55143564 55143564 C T LILRB1 Silent p.R179R 0.30 TCGA-06-0137-01 19 5997146 5997146 G A RFX2 Silent p.D646D 0.25 TCGA-06-0137-01 19 617132 617132 G A HCN2 3'UTR 0.29 TCGA-06-0137-01 1 116666899 116666899 C T MAB21L3 Silent p.D134D 0.37 TCGA-06-0137-01 1 149901596 149901596 T C MTMR11 Silent p.P620P 0.47 TCGA-06-0137-01 1 156836717 156836717 C T NTRK1 Silent p.N125N 0.34 TCGA-06-0137-01 1 157739709 157739709 G A FCRL2 Missense_Mutation p.T181M 0.42 deleterious(0.04) probably_damaging(0.938) TCGA-06-0137-01 1 207135779 207135779 C T FCAMR Missense_Mutation p.R144H 0.45 deleterious(0) possibly_damaging(0.768) TCGA-06-0137-01 1 233231513 233231513 A G PCNXL2 Missense_Mutation p.F1312L 0.50 deleterious(0.03) benign(0.225) TCGA-06-0137-01 1 244528021 244528021 C T C1orf100 Nonsense_Mutation p.R7* 0.35 TCGA-06-0137-01 1 248756435 248756435 G A OR2T10 Missense_Mutation p.T212M 0.84 deleterious(0.04) benign(0.223) TCGA-06-0137-01 1 26885365 26885365 C T RPS6KA1 Silent p.T393T 0.45 TCGA-06-0137-01 1 39549978 39549978 C T MACF1 Missense_Mutation p.R30W 0.35 benign(0.066) TCGA-06-0137-01 20 60887326 60887326 G A LAMA5 Missense_Mutation p.A3136V 0.19 benign(0.036) TCGA-06-0137-01 20 744504 744504 C T SLC52A3 Silent p.A237A 0.04 TCGA-06-0137-01 21 45877207 45877207 G A LRRC3 Missense_Mutation p.R227H 0.44 deleterious(0) probably_damaging(0.996) TCGA-06-0137-01 21 46057875 46057875 G A KRTAP10-10 Missense_Mutation p.A181T 0.45 tolerated(0.75) benign(0.091) TCGA-06-0137-01 22 25263061 25263061 G A SGSM1 Missense_Mutation p.V310I 0.14 tolerated(0.2) benign(0.391) TCGA-06-0137-01 22 32924868 32924868 C T SYN3 Missense_Mutation p.R408K 0.44 tolerated(0.17) unknown(0) TCGA-06-0137-01 22 46860064 46860064 G A CELSR1 Silent p.D1241D 0.40 TCGA-06-0137-01 2 131356244 131356244 G A CFC1 Missense_Mutation p.P73L 0.25 tolerated(0.38) benign(0.002) TCGA-06-0137-01 2 179497473 179497473 G A TTN Silent p.F14420F 0.40 TCGA-06-0137-01 2 182358131 182358131 G A ITGA4 Silent p.S411S 0.48 TCGA-06-0137-01 2 44078770 44078770 G A ABCG8 Missense_Mutation p.G124S 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-06-0137-01 2 88991202 88991202 G T RPIA 5'UTR 0.56 TCGA-06-0137-01 3 111782428 111782428 C T TMPRSS7 Missense_Mutation p.R376C 0.06 deleterious(0) probably_damaging(0.947) TCGA-06-0137-01 3 121212455 121212455 G T POLQ Silent p.R798R 0.36 TCGA-06-0137-01 3 148459240 148459240 C T AGTR1 Missense_Mutation p.R140C 0.46 deleterious(0) probably_damaging(1) TCGA-06-0137-01 3 187416724 187416724 G A RTP2 Silent p.R80R 0.45 TCGA-06-0137-01 3 38592883 38592883 G A SCN5A Silent p.I1660I 0.26 TCGA-06-0137-01 3 38765036 38765036 G A SCN10A Silent p.D1079D 0.26 TCGA-06-0137-01 3 38770224 38770224 G A SCN10A Nonsense_Mutation p.R817* 0.35 TCGA-06-0137-01 3 96706525 96706525 C T EPHA6 Missense_Mutation p.R268C 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-0137-01 4 153831405 153831405 G C ARFIP1 3'UTR 0.51 TCGA-06-0137-01 4 38830432 38830432 C - TLR6 Frame_Shift_Del p.C222Afs*4 0.26 TCGA-06-0137-01 4 39000377 39000377 G A TMEM156 Missense_Mutation p.R81C 0.29 deleterious(0) possibly_damaging(0.523) TCGA-06-0137-01 5 128302221 128302221 G A SLC27A6 Missense_Mutation p.V131M 0.42 tolerated(0.08) probably_damaging(0.963) TCGA-06-0137-01 5 148637854 148637854 C T ABLIM3 Missense_Mutation p.R647C 0.37 deleterious(0) possibly_damaging(0.902) TCGA-06-0137-01 5 169108785 169108785 G A DOCK2 Missense_Mutation p.G170R 0.37 deleterious(0) probably_damaging(0.997) TCGA-06-0137-01 5 34823835 34823835 A G RAI14 Missense_Mutation p.M633V 0.43 tolerated(0.12) benign(0.051) TCGA-06-0137-01 5 36035966 36035966 G A UGT3A2 Missense_Mutation p.T469M 0.40 deleterious(0.03) benign(0.017) TCGA-06-0137-01 5 41067251 41067251 G A MROH2B Nonsense_Mutation p.R54* 0.25 TCGA-06-0137-01 6 42993026 42993026 C A RRP36 Silent p.R102R 0.40 TCGA-06-0137-01 6 55120034 55120034 G A HCRTR2 Missense_Mutation p.R168Q 0.37 deleterious(0.01) probably_damaging(0.995) TCGA-06-0137-01 6 70840111 70840111 A G COL19A1 Missense_Mutation p.D460G 0.57 deleterious(0.03) benign(0.094) TCGA-06-0137-01 6 87967291 87967291 G C ZNF292 Missense_Mutation p.G1315A 0.28 tolerated(0.83) benign(0.001) TCGA-06-0137-01 7 136938378 136938378 T A PTN Missense_Mutation p.K41I 0.08 deleterious(0.01) probably_damaging(0.939) TCGA-06-0137-01 7 138440463 138440463 C T ATP6V0A4 Missense_Mutation p.V263I 0.30 tolerated(0.06) benign(0.078) TCGA-06-0137-01 7 23296847 23296847 C T GPNMB Intron 0.27 TCGA-06-0137-01 7 2611946 2611946 G A IQCE Missense_Mutation p.R127H 0.32 tolerated(0.05) benign(0.019) TCGA-06-0137-01 7 39491208 39491208 C A POU6F2 Missense_Mutation p.A437E 0.05 tolerated(0.12) unknown(0) TCGA-06-0137-01 7 44046790 44046790 C A SPDYE1 Intron 0.35 TCGA-06-0137-01 7 44736643 44736643 C T OGDH Silent p.D677D 0.42 TCGA-06-0137-01 7 57529294 57529294 G T ZNF716 Missense_Mutation p.G376V 0.28 deleterious(0) probably_damaging(0.965) TCGA-06-0137-01 7 82763627 82763627 G - PCLO Frame_Shift_Del p.T1080Mfs*19 0.27 TCGA-06-0137-01 8 110984522 110984522 G T KCNV1 Missense_Mutation p.A319D 0.32 deleterious(0.01) benign(0.425) TCGA-06-0137-01 8 113988211 113988211 C T CSMD3 Silent p.T399T 0.43 TCGA-06-0137-01 8 143310836 143310836 C T TSNARE1 Intron 0.50 TCGA-06-0137-01 8 1497705 1497705 C T DLGAP2 Silent p.D282D 0.35 TCGA-06-0137-01 8 57358286 57358286 C T PENK Intron 0.57 TCGA-06-0137-01 9 101235479 101235479 G A GABBR2 Silent p.G316G 0.43 TCGA-06-0137-01 9 135804224 135804224 G T TSC1 Silent p.A12A 0.26 TCGA-06-0137-01 9 138415812 138415812 C T LCN1 Missense_Mutation p.P127S 0.04 tolerated(0.7) benign(0.004) TCGA-06-0137-01 X 123554390 123554390 C T TENM1 Missense_Mutation p.A1585T 0.46 tolerated(0.64) benign(0.001) TCGA-06-0137-01 X 142795342 142795342 G A SPANXN2 Silent p.D112D 0.24 TCGA-06-0137-01 X 152482500 152482500 G A MAGEA1 Missense_Mutation p.L171F 0.42 deleterious(0.04) possibly_damaging(0.618) TCGA-06-0137-01 X 18664128 18664128 C T CDKL5 Silent p.D905D 0.29 TCGA-06-0137-01 X 69510643 69510643 G T KIF4A Missense_Mutation p.G75C 0.05 deleterious(0) probably_damaging(0.992) TCGA-06-0137-01 X 96684727 96684727 G A DIAPH2 Missense_Mutation p.R1075Q 0.51 deleterious(0.03) probably_damaging(0.996) TCGA-06-0139-01 15 102346736 102346736 G A OR4F6 Missense_Mutation p.A272T 0.07 deleterious_low_confidence(0.01) benign(0.367) TCGA-06-0139-01 17 74094004 74094004 C A EXOC7 Missense_Mutation p.L171F 0.08 deleterious(0.01) benign(0.339) TCGA-06-0139-01 8 59409488 59409488 G A CYP7A1 Missense_Mutation p.R195W 0.05 deleterious(0.01) benign(0.208) TCGA-06-0139-01 9 80921319 80921319 G A PSAT1 Missense_Mutation p.D163N 0.03 tolerated(0.47) benign(0.002) TCGA-06-0140-01 10 119003545 119003545 C T SLC18A2 Missense_Mutation p.T62M 0.39 tolerated(0.06) benign(0.219) TCGA-06-0140-01 10 129682096 129682096 C T CLRN3 Silent p.S91S 0.33 TCGA-06-0140-01 11 113857684 113857684 G A HTR3A Missense_Mutation p.A390T 0.28 tolerated(1) benign(0.005) TCGA-06-0140-01 11 4945520 4945520 G A OR51G1 Missense_Mutation p.T17M 0.30 tolerated(0.05) benign(0.054) TCGA-06-0140-01 11 4976936 4976936 A G OR51A2 Missense_Mutation p.I3T 0.24 tolerated(0.45) benign(0.005) TCGA-06-0140-01 11 60161321 60161321 G A MS4A7 Missense_Mutation p.R237Q 0.24 deleterious_low_confidence(0.02) benign(0.002) TCGA-06-0140-01 11 61032003 61032003 G A VWCE Missense_Mutation p.A729V 0.09 deleterious(0.01) benign(0.243) TCGA-06-0140-01 12 112721040 112721040 C T HECTD4 Missense_Mutation p.E324K 0.20 benign(0.058) TCGA-06-0140-01 12 68052054 68052054 T G DYRK2 Missense_Mutation p.V456G 0.87 deleterious(0) possibly_damaging(0.905) TCGA-06-0140-01 13 48951144 48951144 C T RB1 Nonsense_Mutation p.Q436* 0.42 TCGA-06-0140-01 15 25925003 25925003 G A ATP10A Missense_Mutation p.R1329C 0.20 tolerated(0.23) benign(0.002) TCGA-06-0140-01 16 20976074 20976074 C T DNAH3 Silent p.T3044T 0.25 TCGA-06-0140-01 16 47117102 47117102 C T NETO2 3'UTR 0.26 TCGA-06-0140-01 16 57794781 57794781 T C KIFC3 Missense_Mutation p.I697V 0.24 deleterious(0) possibly_damaging(0.568) TCGA-06-0140-01 16 67229835 67229835 A G E2F4 Missense_Mutation p.N320S 0.30 tolerated(1) benign(0) TCGA-06-0140-01 16 75513386 75513386 C T CHST6 Missense_Mutation p.R114H 0.35 tolerated(0.2) benign(0.014) TCGA-06-0140-01 16 77355016 77355016 C G ADAMTS18 Missense_Mutation p.K749N 0.22 tolerated(0.12) benign(0.038) TCGA-06-0140-01 17 39767345 39767345 G A KRT16 Silent p.D303D 0.22 TCGA-06-0140-01 19 1106624 1106624 C G GPX4 3'UTR 0.14 TCGA-06-0140-01 19 19656153 19656153 G A CILP2 Silent p.P933P 0.18 TCGA-06-0140-01 19 47998929 47998929 C G NAPA Intron 0.23 TCGA-06-0140-01 19 49013377 49013377 C T LMTK3 Silent p.A117A 0.28 TCGA-06-0140-01 19 57133286 57133286 G A ZNF71 Missense_Mutation p.E211K 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-06-0140-01 1 104297390 104297390 G A AMY1C Missense_Mutation p.R352Q 0.08 tolerated(0.07) probably_damaging(1) TCGA-06-0140-01 1 112322885 112322885 G A KCND3 Nonsense_Mutation p.Q475* 0.29 TCGA-06-0140-01 1 203472741 203472741 C T OPTC Missense_Mutation p.R298C 0.25 deleterious(0.02) probably_damaging(0.998) TCGA-06-0140-01 1 207109154 207109154 A T PIGR Missense_Mutation p.I352N 0.14 deleterious(0) probably_damaging(0.928) TCGA-06-0140-01 1 94463458 94463458 G A ABCA4 Missense_Mutation p.L2230F 0.37 tolerated(0.51) benign(0.001) TCGA-06-0140-01 20 41101086 41101086 C T PTPRT Missense_Mutation p.V424M 0.24 tolerated(0.11) benign(0.238) TCGA-06-0140-01 22 50921222 50921222 G A ADM2 Missense_Mutation p.G113S 0.33 tolerated(0.09) possibly_damaging(0.502) TCGA-06-0140-01 2 107460088 107460088 C T ST6GAL2 Missense_Mutation p.V116M 0.18 benign(0.014) TCGA-06-0140-01 2 114691915 114691915 C T ACTR3 Silent p.T164T 0.06 TCGA-06-0140-01 2 153515685 153515685 C T PRPF40A Missense_Mutation p.D810N 0.15 deleterious(0.03) unknown(0) TCGA-06-0140-01 2 15493765 15493765 C T NBAS Missense_Mutation p.R1334H 0.26 deleterious(0) possibly_damaging(0.906) TCGA-06-0140-01 2 220476376 220476376 G A STK11IP Missense_Mutation p.A730T 0.04 tolerated(0.29) benign(0.006) TCGA-06-0140-01 2 224462380 224462380 C T SCG2 Missense_Mutation p.E541K 0.13 tolerated(0.21) benign(0.174) TCGA-06-0140-01 2 238449109 238449109 C A MLPH Missense_Mutation p.A408D 0.05 tolerated(0.22) benign(0.004) TCGA-06-0140-01 2 238449110 238449110 C A MLPH Silent p.A408A 0.06 TCGA-06-0140-01 2 72360330 72360330 C T CYP26B1 Missense_Mutation p.R323Q 0.31 tolerated(0.18) benign(0.271) TCGA-06-0140-01 3 119316815 119316815 C G PLA1A Missense_Mutation p.L19V 0.29 deleterious(0.02) benign(0.113) TCGA-06-0140-01 3 131190114 131190114 T C MRPL3 Silent p.K213K 0.28 TCGA-06-0140-01 4 154215581 154215581 G A TRIM2 Missense_Mutation p.V244M 0.17 deleterious(0.03) possibly_damaging(0.702) TCGA-06-0140-01 4 74442417 74442417 C T RASSF6 Silent p.P283P 0.24 TCGA-06-0140-01 5 153190767 153190767 G A GRIA1 Silent p.L911L 0.32 TCGA-06-0140-01 5 35876389 35876389 G A IL7R Missense_Mutation p.G394D 0.21 tolerated(0.51) benign(0.005) TCGA-06-0140-01 5 50137918 50137918 T G PARP8 3'UTR 0.24 TCGA-06-0140-01 5 72864347 72864347 G A UTP15 Missense_Mutation p.V96M 0.24 deleterious(0) probably_damaging(0.974) TCGA-06-0140-01 6 139208055 139208055 G A ECT2L Missense_Mutation p.C774Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-0140-01 6 398928 398928 G A IRF4 Silent p.A246A 0.20 TCGA-06-0140-01 7 150068350 150068350 G A REPIN1 Missense_Mutation p.R64K 0.19 tolerated(0.17) benign(0.005) TCGA-06-0140-01 7 1855850 1855850 C T MAD1L1 Silent p.S671S 0.24 TCGA-06-0140-01 7 55753014 55753014 C T RNU6-389P 5'Flank 0.07 TCGA-06-0140-01 7 73457353 73457353 G A ELN Missense_Mutation p.G122E 0.14 unknown(0) TCGA-06-0140-01 7 73922465 73922465 C T GTF2IRD1 Missense_Mutation p.R19C 0.15 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-06-0140-01 7 98257925 98257925 G A NPTX2 Missense_Mutation p.R427H 0.29 deleterious(0) probably_damaging(0.97) TCGA-06-0140-01 7 99564820 99564820 T - AZGP1 Frame_Shift_Del p.I235Lfs*101 0.26 TCGA-06-0140-01 8 25161884 25161884 G C DOCK5 Intron 0.24 TCGA-06-0140-01 9 136260823 136260823 G T C9orf96 Missense_Mutation p.V267L 0.31 tolerated(0.33) benign(0.024) TCGA-06-0140-01 9 96051603 96051603 G A WNK2 Missense_Mutation p.V1560I 0.25 unknown(0) TCGA-06-0140-01 9 99252415 99252415 G C HABP4 3'UTR 0.25 TCGA-06-0140-01 X 39932184 39932185 - CAGAC BCOR Nonsense_Mutation p.Y805* 0.30 TCGA-06-0140-01 X 39932185 39932185 T A BCOR Missense_Mutation p.Y805F 0.35 tolerated(0.73) probably_damaging(0.989) TCGA-06-0140-01 X 49957245 49957245 G A AKAP4 Missense_Mutation p.L707F 0.43 deleterious(0) probably_damaging(1) TCGA-06-0141-01 10 16794981 16794981 T C RSU1 Missense_Mutation p.Y140C 0.05 deleterious(0) probably_damaging(0.983) TCGA-06-0141-01 10 38407378 38407378 C A ZNF37A Missense_Mutation p.H433Q 0.05 deleterious(0) probably_damaging(0.98) TCGA-06-0141-01 10 61831909 61831909 G A ANK3 Silent p.N2910N 0.09 TCGA-06-0141-01 11 102220791 102220791 G T BIRC2 Missense_Mutation p.R69L 0.12 deleterious(0) probably_damaging(0.982) TCGA-06-0141-01 11 55322828 55322828 A T OR4C15 Missense_Mutation p.Q349L 0.05 deleterious_low_confidence(0) benign(0.033) TCGA-06-0141-01 12 10573038 10573038 T C KLRC3 Missense_Mutation p.I38V 0.06 deleterious(0) benign(0.26) TCGA-06-0141-01 12 94975965 94975965 A G TMCC3 Missense_Mutation p.I143T 0.05 tolerated(0.09) benign(0.013) TCGA-06-0141-01 13 23928995 23928995 A G SACS Missense_Mutation p.Y586H 0.09 benign(0.001) TCGA-06-0141-01 15 25616938 25616938 T C UBE3A Missense_Mutation p.E131G 0.08 tolerated(0.17) benign(0.066) TCGA-06-0141-01 17 10430104 10430104 G A MYH2 Silent p.N1333N 0.05 TCGA-06-0141-01 19 53303147 53303147 C T ZNF28 Missense_Mutation p.V651I 0.09 tolerated(0.21) benign(0.265) TCGA-06-0141-01 1 26524882 26524882 G A CATSPER4 Missense_Mutation p.G262S 0.07 deleterious(0) probably_damaging(1) TCGA-06-0141-01 2 223160284 223160284 G T PAX3 Silent p.L138L 0.04 TCGA-06-0141-01 2 69583664 69583664 T C GFPT1 Missense_Mutation p.K190R 0.08 tolerated(0.07) probably_damaging(0.912) TCGA-06-0141-01 4 40122570 40122570 G T N4BP2 Nonsense_Mutation p.G947* 0.07 TCGA-06-0141-01 4 52883712 52883712 T C LRRC66 Missense_Mutation p.N23S 0.12 tolerated(0.08) benign(0.046) TCGA-06-0141-01 4 83372300 83372300 G A ENOPH1 Silent p.V97V 0.09 TCGA-06-0141-01 4 89053011 89053011 T C ABCG2 Missense_Mutation p.I108V 0.06 tolerated(0.11) benign(0.074) TCGA-06-0141-01 5 140263677 140263677 G A PCDHA13 Silent p.S608S 0.08 TCGA-06-0141-01 5 140604583 140604583 C A PCDHB14 Silent p.S502S 0.09 TCGA-06-0141-01 8 135533235 135533235 T G ZFAT Missense_Mutation p.K1042T 0.15 deleterious(0) probably_damaging(0.956) TCGA-06-0141-01 8 145268088 145268088 C T MROH1 Intron 0.07 TCGA-06-0141-01 X 125298905 125298905 G A DCAF12L2 Missense_Mutation p.R335C 0.13 deleterious(0) probably_damaging(1) TCGA-06-0142-01 10 52389489 52389489 T C RP11-50E11.3 RNA 0.10 TCGA-06-0142-01 11 101323720 101323720 G A TRPC6 Missense_Mutation p.S921F 0.04 deleterious(0.02) benign(0.11) TCGA-06-0142-01 11 5758585 5758585 T C OR56B1 Missense_Mutation p.I280T 0.04 deleterious(0.01) benign(0.35) TCGA-06-0142-01 14 104135871 104135871 C A KLC1 Missense_Mutation p.A274E 0.05 deleterious(0) probably_damaging(0.977) TCGA-06-0142-01 14 20502539 20502539 A G OR4K13 Missense_Mutation p.C127R 0.05 deleterious(0) probably_damaging(0.988) TCGA-06-0142-01 14 38295492 38295492 G T TTC6 Silent p.V1689V 0.05 TCGA-06-0142-01 14 52535489 52535489 A G NID2 Missense_Mutation p.L75P 0.05 deleterious(0) probably_damaging(0.91) TCGA-06-0142-01 15 90321328 90321328 G A MESP2 Silent p.S319S 0.05 TCGA-06-0142-01 16 4322790 4322790 C T TFAP4 5'UTR 0.14 TCGA-06-0142-01 16 81944227 81944227 C T PLCG2 Silent p.A612A 0.04 TCGA-06-0142-01 17 10352234 10352234 G A MYH4 Nonsense_Mutation p.R1438* 0.04 TCGA-06-0142-01 17 7668816 7668816 C T DNAH2 Silent p.G1148G 0.06 TCGA-06-0142-01 19 20807475 20807475 C G ZNF626 Missense_Mutation p.G403A 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-06-0142-01 19 36303630 36303630 G A PRODH2 Silent p.G102G 0.10 TCGA-06-0142-01 19 43376102 43376102 C T PSG1 Missense_Mutation p.A176T 0.06 tolerated(1) benign(0.11) TCGA-06-0142-01 19 58806753 58806753 G A ZNF8 Missense_Mutation p.G527R 0.05 tolerated(0.59) benign(0.003) TCGA-06-0142-01 1 110171969 110171969 G A AMPD2 Silent p.V627V 0.04 TCGA-06-0142-01 20 42355070 42355070 C T GTSF1L Missense_Mutation p.D89N 0.05 tolerated(0.43) benign(0.001) TCGA-06-0142-01 20 44171338 44171338 C T EPPIN Splice_Site p.X131_splice 0.06 TCGA-06-0142-01 21 47537831 47537831 G A COL6A2 Missense_Mutation p.R366Q 0.10 tolerated(0.58) benign(0.004) TCGA-06-0142-01 2 223084911 223084911 G A PAX3 Missense_Mutation p.S374L 0.10 deleterious_low_confidence(0.01) benign(0.124) TCGA-06-0142-01 2 232457869 232457869 C T C2orf57 Silent p.D69D 0.05 TCGA-06-0142-01 2 32740406 32740406 G A BIRC6 Missense_Mutation p.A3640T 0.09 benign(0.002) TCGA-06-0142-01 3 39374277 39374277 C T CCR8 Missense_Mutation p.T152M 0.08 tolerated(0.11) benign(0.013) TCGA-06-0142-01 3 49898275 49898275 T C CAMKV Missense_Mutation p.N217D 0.03 tolerated(0.12) probably_damaging(0.935) TCGA-06-0142-01 3 93813043 93813043 G C NSUN3 Missense_Mutation p.E176Q 0.05 tolerated(0.06) probably_damaging(0.992) TCGA-06-0142-01 4 159590866 159590866 C T C4orf46 Missense_Mutation p.V81M 0.05 deleterious_low_confidence(0) benign(0.144) TCGA-06-0142-01 4 40440502 40440502 G A RBM47 Missense_Mutation p.R137C 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-06-0142-01 4 55955885 55955885 C T KDR Missense_Mutation p.V1093I 0.04 tolerated(0.06) benign(0.181) TCGA-06-0142-01 5 137485483 137485483 C T BRD8 Missense_Mutation p.E1042K 0.07 tolerated(0.65) benign(0) TCGA-06-0142-01 5 87516531 87516531 G C TMEM161B Missense_Mutation p.H99D 0.04 deleterious(0) possibly_damaging(0.665) TCGA-06-0142-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.04 deleterious(0.02) probably_damaging(0.974) TCGA-06-0142-01 9 34489407 34489407 T A DNAI1 Missense_Mutation p.D116E 0.06 tolerated(0.41) benign(0.034) TCGA-06-0142-01 X 48341022 48341022 C A FTSJ1 Missense_Mutation p.T266K 0.22 deleterious(0.01) benign(0.081) TCGA-06-0142-01 X 63569901 63569901 A C MTMR8 Missense_Mutation p.L173W 0.08 deleterious(0.02) probably_damaging(0.982) TCGA-06-0145-01 10 55755492 55755492 G A PCDH15 Nonsense_Mutation p.R929* 0.07 TCGA-06-0145-01 10 90665247 90665247 A T STAMBPL1 Silent p.P26P 0.62 TCGA-06-0145-01 11 118130818 118130818 G A MPZL2 Missense_Mutation p.R179W 0.35 deleterious(0.01) benign(0.234) TCGA-06-0145-01 11 125503112 125503112 G A CHEK1 Missense_Mutation p.R160H 0.35 deleterious(0.01) possibly_damaging(0.778) TCGA-06-0145-01 11 16810616 16810616 C T PLEKHA7 3'UTR 0.55 TCGA-06-0145-01 11 30034356 30034356 T C KCNA4 5'UTR 0.67 TCGA-06-0145-01 11 4870156 4870156 C T OR51S1 Missense_Mutation p.A95T 0.39 deleterious(0.03) benign(0.153) TCGA-06-0145-01 11 49175930 49175930 G A FOLH1 Nonsense_Mutation p.R580* 0.35 TCGA-06-0145-01 11 55587854 55587854 C A OR5D18 Missense_Mutation p.T250N 0.37 deleterious(0) possibly_damaging(0.836) TCGA-06-0145-01 11 60150731 60150731 C T MS4A7 Silent p.N39N 0.45 TCGA-06-0145-01 11 8953775 8953775 G A C11orf16 Silent p.D27D 0.53 TCGA-06-0145-01 12 113835119 113835119 G A SDS Silent p.G168G 0.41 TCGA-06-0145-01 12 18658236 18658236 A G PIK3C2G Missense_Mutation p.N1014S 0.50 deleterious(0.02) probably_damaging(1) TCGA-06-0145-01 12 2774113 2774113 C A CACNA1C Missense_Mutation p.A1500D 0.12 deleterious(0) possibly_damaging(0.79) TCGA-06-0145-01 12 27841240 27841240 G A PPFIBP1 Missense_Mutation p.A800T 0.41 tolerated(0.92) benign(0.001) TCGA-06-0145-01 12 3128315 3128315 C T TEAD4 Nonsense_Mutation p.Q188* 0.48 TCGA-06-0145-01 12 91502375 91502375 G T LUM Missense_Mutation p.L128M 0.43 deleterious(0) probably_damaging(0.988) TCGA-06-0145-01 13 25745233 25745233 G A AMER2 Silent p.N175N 0.35 TCGA-06-0145-01 13 28840979 28840979 A T PAN3 Missense_Mutation p.K513N 0.41 deleterious(0.04) probably_damaging(0.998) TCGA-06-0145-01 13 33704189 33704189 G A STARD13 Missense_Mutation p.R209C 0.46 tolerated(0.18) probably_damaging(0.957) TCGA-06-0145-01 14 105954816 105954816 C T CRIP1 Missense_Mutation p.R68W 0.21 tolerated(0.18) possibly_damaging(0.453) TCGA-06-0145-01 14 42356674 42356674 T A LRFN5 Missense_Mutation p.F282L 0.39 tolerated(0.06) probably_damaging(0.947) TCGA-06-0145-01 14 63858710 63858710 C A PPP2R5E Missense_Mutation p.D295Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-06-0145-01 14 73717702 73717702 G A PAPLN Missense_Mutation p.V185I 0.38 deleterious(0.05) benign(0.03) TCGA-06-0145-01 15 100340366 100340366 G A DNM1P46 RNA 0.33 TCGA-06-0145-01 15 50549631 50549631 G A HDC Silent p.G144G 0.39 TCGA-06-0145-01 16 15844112 15844112 C T MYH11 Silent p.K654K 0.33 TCGA-06-0145-01 16 30364599 30364599 G A CD2BP2 Missense_Mutation p.S273L 0.06 tolerated(0.16) benign(0.006) TCGA-06-0145-01 16 4033425 4033425 G A ADCY9 Missense_Mutation p.P776L 0.36 tolerated(0.09) benign(0.269) TCGA-06-0145-01 16 71026070 71026070 G T HYDIN Missense_Mutation p.Q1230K 0.43 benign(0.025) TCGA-06-0145-01 17 1257637 1257637 C T YWHAE Missense_Mutation p.A195T 0.05 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-06-0145-01 17 20319963 20319963 C G SRP68P3 RNA 0.27 TCGA-06-0145-01 17 33806205 33806205 C T SLFN12L Missense_Mutation p.V342M 0.33 tolerated(0.19) possibly_damaging(0.688) TCGA-06-0145-01 17 34199298 34199298 G A CCL5 3'UTR 0.54 TCGA-06-0145-01 17 39659272 39659272 G A KRT13 Missense_Mutation p.R272C 0.39 deleterious(0.04) probably_damaging(0.982) TCGA-06-0145-01 17 40259776 40259776 C T DHX58 Silent p.A281A 0.20 TCGA-06-0145-01 17 80045208 80045208 C T FASN Silent p.K1072K 0.54 TCGA-06-0145-01 18 22902139 22902139 T C ZNF521 Missense_Mutation p.K18R 0.38 tolerated_low_confidence(0.52) benign(0.001) TCGA-06-0145-01 18 23618584 23618584 C T SS18 Missense_Mutation p.G272E 0.33 deleterious_low_confidence(0) possibly_damaging(0.686) TCGA-06-0145-01 18 70532835 70532835 C A NETO1 Intron 0.14 TCGA-06-0145-01 19 17007075 17007075 C T CPAMD8 Missense_Mutation p.G1827R 0.30 deleterious_low_confidence(0.04) benign(0.011) TCGA-06-0145-01 19 17025572 17025572 G A CPAMD8 Silent p.F1274F 0.29 TCGA-06-0145-01 19 3746600 3746600 C T TJP3 Missense_Mutation p.R719C 0.18 deleterious(0) probably_damaging(1) TCGA-06-0145-01 19 43702421 43702421 G C PSG4 Missense_Mutation p.T146S 0.27 tolerated(0.15) benign(0.08) TCGA-06-0145-01 19 44661986 44661986 G - ZNF234 Frame_Shift_Del p.S606Ifs*63 0.22 TCGA-06-0145-01 19 55505643 55505643 G A NLRP2 Nonsense_Mutation p.W905* 0.19 TCGA-06-0145-01 19 56459556 56459556 C T NLRP8 Silent p.R96R 0.29 TCGA-06-0145-01 1 17575699 17575699 G A PADI3 Missense_Mutation p.V23M 0.31 tolerated(0.15) benign(0.117) TCGA-06-0145-01 1 183895313 183895313 A T RGL1 Nonsense_Mutation p.K767* 0.34 TCGA-06-0145-01 1 207286351 207286351 C T C4BPA 5'UTR 0.35 TCGA-06-0145-01 1 223116326 223116326 G A DISP1 Missense_Mutation p.G54E 0.44 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-06-0145-01 1 237780709 237780709 G C RYR2 Missense_Mutation p.V1947L 0.26 benign(0.029) TCGA-06-0145-01 1 237863752 237863752 G A RYR2 Missense_Mutation p.G3118R 0.42 probably_damaging(0.989) TCGA-06-0145-01 1 24663202 24663202 C T GRHL3 Missense_Mutation p.P166L 0.36 tolerated(0.27) benign(0.231) TCGA-06-0145-01 1 28907432 28907432 A C TRNAU1AP 3'Flank 0.15 TCGA-06-0145-01 1 7798426 7798426 C T CAMTA1 Missense_Mutation p.R1356W 0.38 deleterious_low_confidence(0) possibly_damaging(0.891) TCGA-06-0145-01 1 85499910 85499910 C T MCOLN3 Missense_Mutation p.V141I 0.27 tolerated(0.34) benign(0.008) TCGA-06-0145-01 20 37356997 37356997 G A SLC32A1 Nonsense_Mutation p.W431* 0.45 TCGA-06-0145-01 20 42788599 42788599 G A JPH2 Silent p.A276A 0.53 TCGA-06-0145-01 20 45811961 45811961 G C EYA2 Missense_Mutation p.R486S 0.26 deleterious(0) benign(0.328) TCGA-06-0145-01 21 45948429 45948429 C T TSPEAR Silent p.P276P 0.40 TCGA-06-0145-01 22 39496365 39496365 G T APOBEC3H Missense_Mutation p.A28S 0.05 tolerated(0.1) benign(0.032) TCGA-06-0145-01 2 109526984 109526984 G A EDAR Silent p.N245N 0.45 TCGA-06-0145-01 2 120385326 120385326 C T PCDP1 Silent p.F538F 0.38 TCGA-06-0145-01 2 127818188 127818188 G A BIN1 Intron 0.35 TCGA-06-0145-01 2 131976471 131976471 G A POTEE Missense_Mutation p.V166M 0.14 tolerated_low_confidence(0.38) probably_damaging(0.971) TCGA-06-0145-01 2 137814211 137814211 C T THSD7B Missense_Mutation p.R121C 0.45 deleterious(0.05) benign(0.035) TCGA-06-0145-01 2 168101563 168101563 A G XIRP2 Missense_Mutation p.K1221E 0.36 benign(0.018) TCGA-06-0145-01 2 179469622 179469622 C T TTN Missense_Mutation p.R18065H 0.48 TCGA-06-0145-01 2 233273541 233273541 C T ALPPL2 Silent p.F328F 0.56 TCGA-06-0145-01 2 234621856 234621856 C T UGT1A5 Silent p.N73N 0.34 TCGA-06-0145-01 2 71778830 71778830 G T DYSF Missense_Mutation p.D596Y 0.24 deleterious(0) probably_damaging(0.987) TCGA-06-0145-01 2 7179900 7179900 C T RNF144A 3'UTR 0.37 TCGA-06-0145-01 2 99234834 99234834 C T UNC50 3'UTR 0.61 TCGA-06-0145-01 3 10342852 10342852 G A SEC13 3'UTR 0.50 TCGA-06-0145-01 3 15457048 15457048 C G METTL6 Intron 0.30 TCGA-06-0145-01 3 186791960 186791960 C T ST6GAL1 Missense_Mutation p.P273L 0.29 probably_damaging(0.961) TCGA-06-0145-01 3 53213676 53213676 C T PRKCD Missense_Mutation p.R67C 0.40 deleterious(0) probably_damaging(0.999) TCGA-06-0145-01 3 6903093 6903093 G T GRM7 Missense_Mutation p.K6N 0.32 tolerated_low_confidence(0.32) benign(0.004) TCGA-06-0145-01 4 155226289 155226289 G A DCHS2 Silent p.T1330T 0.32 TCGA-06-0145-01 4 164393803 164393803 G A TKTL2 Missense_Mutation p.R362C 0.43 deleterious(0) probably_damaging(0.997) TCGA-06-0145-01 4 166263206 166263206 G A MSMO1 3'UTR 0.40 TCGA-06-0145-01 4 185329382 185329382 A G IRF2 Silent p.D153D 0.07 TCGA-06-0145-01 4 70455275 70455275 G A UGT2A1 Missense_Mutation p.R633C 0.35 deleterious(0.01) benign(0.159) TCGA-06-0145-01 4 79362349 79362349 C A FRAS1 Missense_Mutation p.H1855N 0.47 benign(0.009) TCGA-06-0145-01 5 1280302 1280302 C A TERT Nonsense_Mutation p.G641* 0.36 TCGA-06-0145-01 5 140166017 140166017 G A PCDHA1 Missense_Mutation p.V48I 0.39 tolerated_low_confidence(1) benign(0.003) TCGA-06-0145-01 5 1422128 1422128 G A SLC6A3 Missense_Mutation p.R219C 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-0145-01 5 150924338 150924338 C T FAT2 Missense_Mutation p.R2117Q 0.44 probably_damaging(0.99) TCGA-06-0145-01 5 161318009 161318009 T C GABRA1 Missense_Mutation p.V270A 0.39 deleterious(0) benign(0.135) TCGA-06-0145-01 5 172396575 172396575 C T RPL26L1 3'UTR 0.29 TCGA-06-0145-01 5 175111476 175111476 C A HRH2 Intron 0.58 TCGA-06-0145-01 6 129371228 129371228 C T LAMA2 Missense_Mutation p.P93L 0.28 deleterious(0.03) benign(0.098) TCGA-06-0145-01 6 137245867 137245867 C T SLC35D3 3'UTR 0.35 TCGA-06-0145-01 6 146720521 146720521 C T GRM1 Silent p.N782N 0.14 TCGA-06-0145-01 6 146755247 146755247 G A GRM1 Missense_Mutation p.R967H 0.38 tolerated_low_confidence(0.32) benign(0.002) TCGA-06-0145-01 6 151789616 151789616 C G C6orf211 Missense_Mutation p.L233V 0.13 deleterious(0) possibly_damaging(0.609) TCGA-06-0145-01 6 153043291 153043291 G A MYCT1 Missense_Mutation p.R204H 0.43 deleterious(0.02) probably_damaging(0.949) TCGA-06-0145-01 6 32815851 32815851 G A TAP1 Missense_Mutation p.R589C 0.53 tolerated(0.14) benign(0.011) TCGA-06-0145-01 6 33740288 33740288 C T LEMD2 3'UTR 0.50 TCGA-06-0145-01 6 45514681 45514681 C T RUNX2 Missense_Mutation p.P402L 0.47 deleterious(0) probably_damaging(0.999) TCGA-06-0145-01 6 56469012 56469012 C T DST Intron 0.43 TCGA-06-0145-01 6 87969728 87969728 A G ZNF292 Missense_Mutation p.I2127M 0.39 deleterious(0) possibly_damaging(0.792) TCGA-06-0145-01 7 142650962 142650962 C T KEL Missense_Mutation p.V336M 0.27 tolerated(0.23) benign(0.067) TCGA-06-0145-01 7 18788727 18788727 G A HDAC9 Missense_Mutation p.R670Q 0.39 deleterious(0) probably_damaging(0.994) TCGA-06-0145-01 7 41729465 41729465 G A INHBA Missense_Mutation p.P355L 0.28 deleterious(0) probably_damaging(1) TCGA-06-0145-01 7 50097612 50097612 G A ZPBP Missense_Mutation p.R154C 0.20 deleterious(0.04) possibly_damaging(0.809) TCGA-06-0145-01 7 53103630 53103630 C T POM121L12 Missense_Mutation p.P89L 0.31 tolerated(0.32) benign(0.005) TCGA-06-0145-01 7 80387693 80387693 C T SEMA3C Missense_Mutation p.A533T 0.11 deleterious(0.01) probably_damaging(0.993) TCGA-06-0145-01 8 72938268 72938268 C A TRPA1 Missense_Mutation p.W993L 0.38 deleterious(0.01) benign(0.33) TCGA-06-0145-01 9 286581 286581 G A DOCK8 Missense_Mutation p.V93M 0.62 deleterious(0.02) probably_damaging(0.964) TCGA-06-0145-01 X 109694565 109694565 A G RGAG1 Silent p.E240E 0.43 TCGA-06-0145-01 X 119746210 119746210 G T MCTS1 3'Flank 0.33 TCGA-06-0145-01 X 119746211 119746211 G T MCTS1 3'Flank 0.32 TCGA-06-0145-01 X 123637433 123637433 T C TENM1 Missense_Mutation p.H1141R 0.40 deleterious(0) probably_damaging(0.997) TCGA-06-0145-01 X 151129839 151129839 T A GABRE Splice_Site p.X188_splice 0.38 TCGA-06-0145-01 X 152801876 152801876 C T ATP2B3 Silent p.S57S 0.46 TCGA-06-0145-01 X 18260650 18260650 G T SCML2 Missense_Mutation p.P628H 0.37 deleterious(0) probably_damaging(0.977) TCGA-06-0145-01 X 21670464 21670464 A G CNKSR2 Missense_Mutation p.D977G 0.35 deleterious(0.03) benign(0.066) TCGA-06-0145-01 X 31986588 31986588 G A DMD Missense_Mutation p.T2161I 0.48 benign(0) TCGA-06-0145-01 X 48771498 48771498 C A PIM2 Silent p.L282L 0.43 TCGA-06-0145-01 X 69478786 69478786 G T P2RY4 Missense_Mutation p.P230H 0.41 deleterious(0.01) benign(0.248) TCGA-06-0145-01 X 69626855 69626855 A G KIF4A Missense_Mutation p.D1062G 0.40 tolerated(0.2) benign(0) TCGA-06-0145-01 X 70351950 70351950 G A MED12 Missense_Mutation p.A1383T 0.44 probably_damaging(0.981) TCGA-06-0145-01 X 96171460 96171460 A G DIAPH2 Silent p.G252G 0.36 TCGA-06-0145-01 X 9711643 9711643 C - GPR143 Frame_Shift_Del p.I244Sfs*10 0.30 TCGA-06-0151-01 10 45602509 45602512 TAGA - RSU1P2 RNA 0.45 TCGA-06-0151-01 12 109017957 109017957 C - SELPLG Frame_Shift_Del p.A59Pfs*7 0.30 TCGA-06-0151-01 12 52639222 52639222 C T KRT7 Silent p.A337A 0.25 TCGA-06-0151-01 12 57431824 57431824 C T MYO1A Missense_Mutation p.R597Q 0.32 tolerated(0.34) benign(0.002) TCGA-06-0151-01 17 38812794 38812794 G A KRT222 Nonsense_Mutation p.R250* 0.13 TCGA-06-0151-01 19 51295399 51295399 G A ACPT Missense_Mutation p.E174K 0.52 tolerated(0.1) benign(0.005) TCGA-06-0151-01 19 57089037 57089037 C T ZNF470 Nonsense_Mutation p.Q414* 0.34 TCGA-06-0151-01 1 167097496 167097496 G A DUSP27 Missense_Mutation p.R1043H 0.07 deleterious(0.03) benign(0.017) TCGA-06-0151-01 1 175097757 175097757 G A TNN Missense_Mutation p.D1069N 0.29 deleterious(0.01) probably_damaging(1) TCGA-06-0151-01 1 185266996 185266996 C T IVNS1ABP 3'UTR 0.41 TCGA-06-0151-01 1 196964976 196964976 C G CFHR5 Missense_Mutation p.P246R 0.23 deleterious(0) probably_damaging(1) TCGA-06-0151-01 1 200635187 200635187 G A DDX59 Missense_Mutation p.P228S 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-06-0151-01 21 46330269 46330269 G A ITGB2 Missense_Mutation p.T26M 0.05 tolerated(0.08) possibly_damaging(0.844) TCGA-06-0151-01 22 31042730 31042730 G T SLC35E4 Missense_Mutation p.W255C 0.28 deleterious(0) probably_damaging(1) TCGA-06-0151-01 2 135965224 135965224 G T ZRANB3 Missense_Mutation p.S930Y 0.23 deleterious(0) benign(0.089) TCGA-06-0151-01 2 179296970 179296970 C T PRKRA Missense_Mutation p.A266T 0.16 tolerated(0.15) benign(0.011) TCGA-06-0151-01 3 173998531 173998531 G C NLGN1 Missense_Mutation p.R637T 0.21 tolerated(0.64) benign(0.234) TCGA-06-0151-01 3 51690054 51690054 C T RAD54L2 Missense_Mutation p.P1032S 0.23 tolerated(0.08) benign(0.443) TCGA-06-0151-01 4 74274453 74274453 G A ALB Missense_Mutation p.R138Q 0.21 tolerated(0.33) benign(0) TCGA-06-0151-01 5 140516934 140516934 G A PCDHB5 Missense_Mutation p.V640M 0.47 deleterious_low_confidence(0.02) benign(0.41) TCGA-06-0151-01 5 2747675 2747675 C T IRX2 3'UTR 0.61 TCGA-06-0151-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.36 deleterious(0) probably_damaging(0.967) TCGA-06-0151-01 9 14150145 14150145 T C NFIB Missense_Mutation p.S269G 0.58 deleterious(0) benign(0.089) TCGA-06-0151-01 9 84609194 84609194 A G SPATA31D1 Missense_Mutation p.Q1270R 0.20 deleterious(0.04) possibly_damaging(0.777) TCGA-06-0152-01 10 129231688 129231688 G T DOCK1 Missense_Mutation p.D1665Y 0.55 deleterious(0.01) probably_damaging(0.974) TCGA-06-0152-01 10 30315407 30315407 G C KIAA1462 Missense_Mutation p.P1224A 0.64 tolerated(0.07) benign(0.287) TCGA-06-0152-01 11 20949959 20949959 C T NELL1 Missense_Mutation p.P311S 0.39 tolerated(0.17) benign(0.309) TCGA-06-0152-01 11 64037664 64037664 G C BAD 3'UTR 0.39 TCGA-06-0152-01 11 65988123 65988123 G A PACS1 Missense_Mutation p.V354M 0.24 tolerated(0.11) possibly_damaging(0.809) TCGA-06-0152-01 12 129694197 129694197 G A TMEM132D Silent p.I437I 0.38 TCGA-06-0152-01 12 3649947 3649947 G T PRMT8 Missense_Mutation p.G84V 0.39 deleterious(0) benign(0.316) TCGA-06-0152-01 13 29599308 29599308 T C MTUS2 Missense_Mutation p.V168A 0.18 tolerated(0.42) benign(0.015) TCGA-06-0152-01 13 86370526 86370526 T G SLITRK6 Missense_Mutation p.K40Q 0.41 deleterious(0.02) probably_damaging(0.968) TCGA-06-0152-01 14 38060897 38060897 G A FOXA1 Silent p.P364P 0.27 TCGA-06-0152-01 14 72055586 72055586 C T SIPA1L1 Missense_Mutation p.H333Y 0.30 deleterious(0) probably_damaging(0.968) TCGA-06-0152-01 14 94394688 94394688 C T FAM181A Silent p.S81S 0.37 TCGA-06-0152-01 14 94914503 94914503 C T SERPINA11 Silent p.T203T 0.37 TCGA-06-0152-01 15 34077951 34077951 G T RYR3 Missense_Mutation p.E3119D 0.17 benign(0.021) TCGA-06-0152-01 15 41860451 41860451 G A TYRO3 Missense_Mutation p.R333H 0.39 tolerated(0.6) benign(0.005) TCGA-06-0152-01 15 42158719 42158719 A G SPTBN5 Intron 0.31 TCGA-06-0152-01 15 71433826 71433826 G A THSD4 5'UTR 0.50 TCGA-06-0152-01 15 74554903 74554903 C T CCDC33 Missense_Mutation p.A103V 0.38 tolerated(0.43) benign(0.001) TCGA-06-0152-01 15 85400203 85400203 C A ALPK3 Missense_Mutation p.A947E 0.35 tolerated_low_confidence(1) benign(0) TCGA-06-0152-01 15 90226684 90226684 C T PEX11A Missense_Mutation p.G223E 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-0152-01 16 83991303 83991303 C A OSGIN1 Silent p.L9L 0.14 TCGA-06-0152-01 17 3567085 3567085 C T TAX1BP3 Missense_Mutation p.R111Q 0.24 deleterious(0.04) benign(0.14) TCGA-06-0152-01 17 4860277 4860277 G A ENO3 Missense_Mutation p.E414K 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-0152-01 17 72916074 72916074 G A USH1G Missense_Mutation p.A286V 0.20 tolerated(0.48) probably_damaging(0.996) TCGA-06-0152-01 17 74136123 74136123 C A FOXJ1 Silent p.P118P 0.21 TCGA-06-0152-01 17 7984477 7984477 G A ALOX12B Silent p.P127P 0.19 TCGA-06-0152-01 18 29890192 29890192 G A GAREM Silent p.R119R 0.37 TCGA-06-0152-01 18 61156656 61156656 C T SERPINB5 Missense_Mutation p.T128M 0.25 deleterious(0.01) probably_damaging(1) TCGA-06-0152-01 19 36024362 36024362 C T GAPDHS 5'UTR 0.27 TCGA-06-0152-01 19 43429925 43429925 C A PSG7 Missense_Mutation p.D415Y 0.40 deleterious_low_confidence(0.03) possibly_damaging(0.694) TCGA-06-0152-01 19 44417709 44417709 G - ZNF45 Frame_Shift_Del p.L627Ffs*67 0.18 TCGA-06-0152-01 19 54669199 54669199 T G TMC4 Missense_Mutation p.D306A 0.32 tolerated(0.68) benign(0.002) TCGA-06-0152-01 19 56244390 56244390 G A NLRP9 Silent p.S269S 0.31 TCGA-06-0152-01 19 9067989 9067989 A G MUC16 Missense_Mutation p.L6486S 0.34 unknown(0) TCGA-06-0152-01 1 15888817 15888817 A C DNAJC16 Silent p.S445S 0.65 TCGA-06-0152-01 1 159410403 159410403 G A OR10J1 Silent p.S285S 0.67 TCGA-06-0152-01 1 160144388 160144388 C A ATP1A4 Missense_Mutation p.T721K 0.14 deleterious(0) probably_damaging(1) TCGA-06-0152-01 1 173505000 173505000 A C SLC9C2 Missense_Mutation p.C582G 0.27 tolerated(0.06) benign(0.001) TCGA-06-0152-01 1 186017944 186017945 - A HMCN1 Frame_Shift_Ins p.N2186Kfs*16 0.46 TCGA-06-0152-01 1 222860999 222860999 G C AIDA Missense_Mutation p.I97M 0.79 tolerated(0.09) benign(0.047) TCGA-06-0152-01 1 62993826 62993826 G C DOCK7 Nonsense_Mutation p.S1280* 0.12 TCGA-06-0152-01 20 23016952 23016952 G T SSTR4 Missense_Mutation p.V278L 0.21 tolerated(0.74) possibly_damaging(0.817) TCGA-06-0152-01 20 44259725 44259725 G A WFDC10A 3'UTR 0.26 TCGA-06-0152-01 20 47244458 47244458 G A PREX1 Missense_Mutation p.R1604W 0.22 deleterious(0) probably_damaging(1) TCGA-06-0152-01 20 49621144 49621144 C T KCNG1 Missense_Mutation p.R325H 0.30 tolerated(0.12) benign(0.011) TCGA-06-0152-01 20 8352082 8352082 C T PLCB1 Silent p.H77H 0.23 TCGA-06-0152-01 22 40078576 40078576 G A CACNA1I Missense_Mutation p.V1914I 0.66 tolerated(0.47) benign(0.116) TCGA-06-0152-01 2 131486773 131486773 G A GPR148 Missense_Mutation p.A17T 0.25 tolerated(0.41) benign(0.002) TCGA-06-0152-01 2 36810520 36810520 A C FEZ2 Missense_Mutation p.D156E 0.28 tolerated(1) benign(0.009) TCGA-06-0152-01 2 87013056 87013056 G A CD8A Missense_Mutation p.A232V 0.25 deleterious(0.01) benign(0.031) TCGA-06-0152-01 2 96262159 96262159 A T TRIM43 Missense_Mutation p.K239N 0.54 deleterious(0.01) probably_damaging(0.937) TCGA-06-0152-01 3 38104257 38104257 G A DLEC1 Silent p.P353P 0.24 TCGA-06-0152-01 3 41953077 41953077 T G ULK4 Missense_Mutation p.K324T 0.26 tolerated(0.33) benign(0.004) TCGA-06-0152-01 4 151788860 151788860 C T LRBA Missense_Mutation p.R910H 0.46 deleterious(0) probably_damaging(0.996) TCGA-06-0152-01 4 2492204 2492204 A C RNF4 5'UTR 0.07 TCGA-06-0152-01 5 140752102 140752102 G A PCDHGB3 Missense_Mutation p.R714H 0.29 tolerated(0.12) benign(0.22) TCGA-06-0152-01 5 180048197 180048197 G A FLT4 Silent p.S692S 0.40 TCGA-06-0152-01 5 61686705 61686705 G - DIMT1 Frame_Shift_Del p.R300Dfs*29 0.29 TCGA-06-0152-01 6 108225906 108225906 T G SEC63 Missense_Mutation p.K327N 0.43 deleterious(0.01) possibly_damaging(0.875) TCGA-06-0152-01 6 142736937 142736937 T C GPR126 Silent p.L892L 0.39 TCGA-06-0152-01 6 34004373 34004373 C T GRM4 Missense_Mutation p.R505Q 0.35 tolerated(0.53) benign(0) TCGA-06-0152-01 6 38957817 38957817 G A DNAH8 Silent p.P4144P 0.32 TCGA-06-0152-01 6 47763200 47763200 C T OPN5 Silent p.Y219Y 0.33 TCGA-06-0152-01 6 51889738 51889738 G A PKHD1 Missense_Mutation p.R1624W 0.38 deleterious(0) possibly_damaging(0.67) TCGA-06-0152-01 6 74079390 74079390 C T OOEP Silent p.P42P 0.30 TCGA-06-0152-01 6 76024625 76024625 G T FILIP1 Nonsense_Mutation p.S308* 0.33 TCGA-06-0152-01 7 103338350 103338350 C T RELN Missense_Mutation p.D365N 0.18 deleterious(0.01) probably_damaging(0.99) TCGA-06-0152-01 7 142655026 142655026 G T KEL Missense_Mutation p.S187Y 0.34 tolerated(0.26) benign(0.02) TCGA-06-0152-01 7 143036401 143036401 C G CLCN1 Missense_Mutation p.P486R 0.13 deleterious(0) probably_damaging(1) TCGA-06-0152-01 7 19761681 19761681 A G TMEM196 3'UTR 0.31 TCGA-06-0152-01 7 80091535 80091535 C - GNAT3 Frame_Shift_Del p.D272Ifs*7 0.19 TCGA-06-0152-01 7 87258211 87258211 G C RUNDC3B Silent p.L24L 0.17 TCGA-06-0152-01 7 98630631 98630631 C T SMURF1 Intron 0.07 TCGA-06-0152-01 8 1806268 1806268 C A ARHGEF10 Silent p.A60A 0.24 TCGA-06-0152-01 8 67062093 67062093 G T TRIM55 Nonsense_Mutation p.E273* 0.45 TCGA-06-0152-01 9 138586907 138586907 C T SOHLH1 Silent p.A288A 0.32 TCGA-06-0152-01 9 19346294 19346294 C T DENND4C Missense_Mutation p.P1127L 0.38 deleterious(0.03) benign(0.002) TCGA-06-0152-01 9 71080089 71080089 G A PGM5 Missense_Mutation p.R375H 0.35 deleterious(0.01) probably_damaging(0.932) TCGA-06-0154-01 10 24889768 24889768 G C ARHGAP21 Missense_Mutation p.T980R 0.52 tolerated(0.44) benign(0.319) TCGA-06-0154-01 10 26825105 26825105 C T APBB1IP Missense_Mutation p.R335W 0.41 deleterious(0) probably_damaging(1) TCGA-06-0154-01 10 61829891 61829891 G A ANK3 Missense_Mutation p.T3583M 0.44 probably_damaging(0.991) TCGA-06-0154-01 11 56510792 56510792 C A OR9G4 Nonsense_Mutation p.G166* 0.32 TCGA-06-0154-01 11 66033175 66033175 C T KLC2 Nonsense_Mutation p.Q462* 0.37 TCGA-06-0154-01 11 89951306 89951306 T C CHORDC1 Silent p.L37L 0.37 TCGA-06-0154-01 12 10525755 10525755 A G KLRK1 Silent p.C203C 0.30 TCGA-06-0154-01 12 132682414 132682414 C T GALNT9 Missense_Mutation p.G164S 0.26 tolerated(0.09) benign(0.013) TCGA-06-0154-01 12 18552608 18552608 G C PIK3C2G Missense_Mutation p.K673N 0.23 tolerated(0.09) possibly_damaging(0.826) TCGA-06-0154-01 12 55641790 55641790 C T OR6C74 Missense_Mutation p.S240F 0.33 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-06-0154-01 12 57569290 57569290 G C LRP1 Missense_Mutation p.A1199P 0.33 possibly_damaging(0.649) TCGA-06-0154-01 13 25171638 25171638 C T RP11-556N21.1 RNA 0.21 TCGA-06-0154-01 14 64457171 64457171 A G SYNE2 Missense_Mutation p.R786G 0.30 possibly_damaging(0.629) TCGA-06-0154-01 15 27182399 27182399 G A GABRA5 Silent p.A216A 0.28 TCGA-06-0154-01 15 40751044 40751044 C T BAHD1 Silent p.L127L 0.31 TCGA-06-0154-01 16 67683162 67683162 C - RLTPR Frame_Shift_Del p.L566Wfs*29 0.36 TCGA-06-0154-01 17 10370090 10370090 G C MYH4 5'UTR 0.28 TCGA-06-0154-01 17 10428788 10428788 C T MYH2 Missense_Mutation p.R1506Q 0.30 deleterious(0.01) probably_damaging(0.982) TCGA-06-0154-01 17 34074267 34074267 G A GAS2L2 Silent p.L285L 0.37 TCGA-06-0154-01 17 39522870 39522870 G A KRT33B Missense_Mutation p.T147M 0.27 tolerated(0.23) benign(0.097) TCGA-06-0154-01 17 39535941 39535941 C T KRT34 Missense_Mutation p.V253M 0.29 deleterious(0) probably_damaging(0.983) TCGA-06-0154-01 17 72937902 72937902 G A OTOP3 Missense_Mutation p.R163Q 0.29 tolerated(0.09) benign(0.018) TCGA-06-0154-01 19 13218442 13218442 C T TRMT1 Missense_Mutation p.R510Q 0.21 tolerated(0.14) benign(0.006) TCGA-06-0154-01 19 3825291 3825291 C T ZFR2 Missense_Mutation p.V384M 0.24 tolerated(0.21) benign(0.068) TCGA-06-0154-01 19 55494686 55494686 C T NLRP2 Silent p.S540S 0.35 TCGA-06-0154-01 19 8808938 8808938 G A ACTL9 Silent p.P38P 0.18 TCGA-06-0154-01 19 9297245 9297245 C T OR7D2 Missense_Mutation p.A263V 0.19 deleterious_low_confidence(0.03) benign(0.066) TCGA-06-0154-01 1 114636397 114636397 C T SYT6 3'UTR 0.27 TCGA-06-0154-01 1 116675825 116675825 C T MAB21L3 Missense_Mutation p.R310C 0.29 deleterious(0.02) possibly_damaging(0.615) TCGA-06-0154-01 1 16355293 16355293 G A CLCNKA Missense_Mutation p.A336T 0.21 deleterious(0.01) probably_damaging(0.985) TCGA-06-0154-01 1 169510563 169510563 C G F5 Missense_Mutation p.Q1255H 0.30 tolerated_low_confidence(0.13) benign(0.001) TCGA-06-0154-01 1 228467603 228467603 G A OBSCN Missense_Mutation p.R2922Q 0.21 possibly_damaging(0.573) TCGA-06-0154-01 1 237924281 237924281 G A RYR2 Missense_Mutation p.R3810Q 0.56 benign(0.426) TCGA-06-0154-01 1 70503971 70503971 A G LRRC7 Missense_Mutation p.T784A 0.25 tolerated_low_confidence(0.27) benign(0) TCGA-06-0154-01 1 85499910 85499910 C T MCOLN3 Missense_Mutation p.V141I 0.36 tolerated(0.34) benign(0.008) TCGA-06-0154-01 20 34206631 34206631 G A SPAG4 Missense_Mutation p.A236T 0.10 tolerated(0.18) benign(0.03) TCGA-06-0154-01 20 44571848 44571848 C T PCIF1 Silent p.S262S 0.23 TCGA-06-0154-01 21 37408277 37408277 G A SETD4 3'UTR 0.31 TCGA-06-0154-01 21 43161994 43161994 G A RIPK4 Silent p.C453C 0.36 TCGA-06-0154-01 22 32650199 32650199 G A SLC5A4 Missense_Mutation p.A46V 0.37 deleterious(0.04) possibly_damaging(0.856) TCGA-06-0154-01 22 35480407 35480407 G A ISX Missense_Mutation p.R138Q 0.24 deleterious(0) probably_damaging(1) TCGA-06-0154-01 22 40803235 40803235 A G SGSM3 Missense_Mutation p.K424R 0.33 deleterious(0) probably_damaging(0.996) TCGA-06-0154-01 2 132021348 132021348 G A POTEE Missense_Mutation p.G774S 0.19 tolerated_low_confidence(0.1) probably_damaging(1) TCGA-06-0154-01 2 167327191 167327191 C A SCN7A Missense_Mutation p.D200Y 0.25 deleterious(0.01) benign(0.004) TCGA-06-0154-01 3 186362610 186362610 C A FETUB Missense_Mutation p.H165Q 0.35 deleterious(0.03) benign(0.002) TCGA-06-0154-01 3 29938905 29938905 G A RBMS3 Missense_Mutation p.R276H 0.32 tolerated(0.1) probably_damaging(0.997) TCGA-06-0154-01 3 52422625 52422625 G A DNAH1 Silent p.K3121K 0.24 TCGA-06-0154-01 4 175598335 175598335 G A GLRA3 Missense_Mutation p.S274L 0.29 deleterious(0) probably_damaging(0.991) TCGA-06-0154-01 4 46973176 46973176 C T GABRA4 Silent p.P266P 0.34 TCGA-06-0154-01 4 69962448 69962448 C T UGT2B7 Silent p.S70S 0.28 TCGA-06-0154-01 5 115249179 115249179 T C AP3S1 Missense_Mutation p.F192L 0.17 tolerated_low_confidence(0.22) benign(0.003) TCGA-06-0154-01 5 140263908 140263908 C T PCDHA13 Silent p.G685G 0.30 TCGA-06-0154-01 5 140590224 140590224 C T PCDHB12 Missense_Mutation p.P582L 0.27 deleterious_low_confidence(0) benign(0.087) TCGA-06-0154-01 5 140745008 140745008 G A PCDHGA5 Missense_Mutation p.V371I 0.31 deleterious_low_confidence(0.03) possibly_damaging(0.665) TCGA-06-0154-01 5 169503081 169503081 G A DOCK2 Missense_Mutation p.R1620Q 0.46 tolerated(0.18) benign(0.004) TCGA-06-0154-01 5 23526914 23526914 A T PRDM9 Missense_Mutation p.I573L 0.04 deleterious(0.01) benign(0.027) TCGA-06-0154-01 6 138531166 138531166 G T KIAA1244 Silent p.V113V 0.33 TCGA-06-0154-01 6 138657552 138657552 G A KIAA1244 Missense_Mutation p.D2155N 0.27 tolerated(0.23) probably_damaging(0.994) TCGA-06-0154-01 6 161139731 161139731 G A PLG Silent p.L319L 0.35 TCGA-06-0154-01 6 32138354 32138354 G A AGPAT1 Missense_Mutation p.R120C 0.36 deleterious(0.03) probably_damaging(0.985) TCGA-06-0154-01 6 34508955 34508955 G C SPDEF Missense_Mutation p.P147R 0.35 deleterious(0) probably_damaging(1) TCGA-06-0154-01 6 62604709 62604709 G A KHDRBS2 Missense_Mutation p.P214L 0.32 tolerated(0.32) benign(0.001) TCGA-06-0154-01 6 90337365 90337365 C T ANKRD6 Missense_Mutation p.R479C 0.37 deleterious(0) probably_damaging(0.993) TCGA-06-0154-01 7 100549725 100549725 C A MUC3A Silent p.T102T 0.07 TCGA-06-0154-01 7 146997332 146997332 G A CNTNAP2 Missense_Mutation p.R483Q 0.20 tolerated(0.68) benign(0.058) TCGA-06-0154-01 7 31016046 31016046 G A GHRHR Missense_Mutation p.R326H 0.36 deleterious(0) probably_damaging(0.996) TCGA-06-0154-01 7 55220274 55220274 C T EGFR Missense_Mutation p.R222C 0.82 deleterious(0) probably_damaging(1) TCGA-06-0154-01 7 97484694 97484694 G A ASNS Missense_Mutation p.L370F 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-06-0154-01 9 91150637 91150637 C T NXNL2 Silent p.H96H 0.07 TCGA-06-0154-01 X 129200915 129200915 C T ELF4 Silent p.P591P 0.61 TCGA-06-0155-01 10 11505268 11505268 G A USP6NL Silent p.N570N 0.76 TCGA-06-0155-01 10 127456157 127456157 C G MMP21 Missense_Mutation p.D452H 0.60 deleterious(0) probably_damaging(0.997) TCGA-06-0155-01 10 6553040 6553040 C T PRKCQ Missense_Mutation p.V79M 0.59 tolerated(0.12) benign(0.004) TCGA-06-0155-01 10 75204531 75204531 T A PPP3CB Missense_Mutation p.M441L 0.35 tolerated(0.3) benign(0.007) TCGA-06-0155-01 10 89692922 89692922 T C PTEN Missense_Mutation p.C136R 0.66 deleterious(0.02) possibly_damaging(0.634) TCGA-06-0155-01 10 95459793 95459794 TT C FRA10AC1 Frame_Shift_Del p.K24Efs*46 0.10 TCGA-06-0155-01 11 113853886 113853886 G A HTR3A Missense_Mutation p.R146Q 0.40 tolerated(0.22) benign(0.005) TCGA-06-0155-01 11 1213531 1213531 C T MUC5AC RNA 0.05 TCGA-06-0155-01 11 35232846 35232846 A G CD44 Missense_Mutation p.T554A 0.37 tolerated(0.33) benign(0.016) TCGA-06-0155-01 11 5862602 5862602 T G OR52E6 Missense_Mutation p.I176L 0.41 deleterious(0.04) possibly_damaging(0.447) TCGA-06-0155-01 11 63149746 63149746 C T SLC22A9 Missense_Mutation p.T357M 0.38 tolerated(0.26) benign(0.041) TCGA-06-0155-01 12 104089589 104089589 G T STAB2 Missense_Mutation p.E1183D 0.36 deleterious(0.02) benign(0.174) TCGA-06-0155-01 12 113905175 113905175 C T LHX5 Missense_Mutation p.A243T 0.15 tolerated(0.09) benign(0.014) TCGA-06-0155-01 12 123944370 123944370 G A SNRNP35 5'UTR 0.75 TCGA-06-0155-01 12 130927111 130927111 G A RIMBP2 Silent p.N245N 0.33 TCGA-06-0155-01 12 2566754 2566754 A G CACNA1C Silent p.E213E 0.34 TCGA-06-0155-01 12 27809558 27809558 G A PPFIBP1 Missense_Mutation p.A267T 0.23 tolerated(0.12) benign(0.003) TCGA-06-0155-01 12 72366329 72366329 T A TPH2 Silent p.T213T 0.38 TCGA-06-0155-01 12 81111228 81111228 G A MYF5 Missense_Mutation p.R129H 0.35 tolerated(0.05) benign(0.25) TCGA-06-0155-01 13 40293942 40293942 G A COG6 Missense_Mutation p.R521H 0.31 deleterious(0.03) benign(0.363) TCGA-06-0155-01 14 45657010 45657010 A G FANCM Missense_Mutation p.K1567E 0.20 deleterious(0.03) probably_damaging(0.922) TCGA-06-0155-01 14 55907173 55907173 G A TBPL2 Missense_Mutation p.R31W 0.42 deleterious_low_confidence(0.04) benign(0.003) TCGA-06-0155-01 15 20649487 20649487 G A HERC2P3 RNA 0.12 TCGA-06-0155-01 15 42193062 42193062 G A EHD4 Silent p.N469N 0.30 TCGA-06-0155-01 16 15737169 15737169 C T NDE1 5'UTR 0.67 TCGA-06-0155-01 16 23226531 23226531 G A SCNN1G Missense_Mutation p.R564H 0.37 tolerated(0.57) benign(0.003) TCGA-06-0155-01 16 553082 553082 G A RAB11FIP3 Silent p.E460E 0.29 TCGA-06-0155-01 16 67040719 67040719 G A CES4A Intron 0.43 TCGA-06-0155-01 16 90160900 90160900 G A TUBB8P7 RNA 0.20 TCGA-06-0155-01 17 1946496 1946496 C T DPH1 3'UTR 0.08 TCGA-06-0155-01 17 79953896 79953896 C T ASPSCR1 Missense_Mutation p.T154M 0.40 deleterious(0) unknown(0) TCGA-06-0155-01 18 19345780 19345780 A G MIB1 Missense_Mutation p.I93V 0.40 deleterious(0) possibly_damaging(0.556) TCGA-06-0155-01 18 57022801 57022801 C A LMAN1 Nonsense_Mutation p.E102* 0.37 TCGA-06-0155-01 19 15484143 15484143 C T AKAP8 Missense_Mutation p.R127H 0.23 deleterious(0.04) possibly_damaging(0.479) TCGA-06-0155-01 19 16060302 16060302 C T OR10H4 Missense_Mutation p.T162M 0.26 tolerated(0.17) benign(0.009) TCGA-06-0155-01 19 50042431 50042431 A G RCN3 Missense_Mutation p.Y225C 0.07 deleterious(0) probably_damaging(0.984) TCGA-06-0155-01 19 50453362 50453362 G T SIGLEC11 Silent p.L654L 0.29 TCGA-06-0155-01 19 53343137 53343137 C T ZNF468 3'UTR 0.21 TCGA-06-0155-01 19 55048324 55048324 T C KIR3DX1 Silent p.G297G 0.25 TCGA-06-0155-01 19 6502176 6502176 G T TUBB4A Silent p.I16I 0.30 TCGA-06-0155-01 19 7807928 7807928 C T CD209 Silent p.A404A 0.26 TCGA-06-0155-01 1 114438528 114438528 G A AP4B1 Missense_Mutation p.P548L 0.38 tolerated(0.36) benign(0) TCGA-06-0155-01 1 16378751 16378751 C T CLCNKB Silent p.F489F 0.21 TCGA-06-0155-01 1 178834371 178834371 A G ANGPTL1 Missense_Mutation p.S181P 0.33 tolerated(0.25) benign(0.078) TCGA-06-0155-01 1 228431145 228431145 G T OBSCN Missense_Mutation p.R1156L 0.37 benign(0.155) TCGA-06-0155-01 1 240072235 240072235 C T CHRM3 Missense_Mutation p.A495V 0.39 deleterious(0) probably_damaging(0.979) TCGA-06-0155-01 1 245022048 245022050 CAT - HNRNPU In_Frame_Del p.D404del 0.27 TCGA-06-0155-01 1 45923297 45923297 G A TESK2 Missense_Mutation p.T54M 0.05 deleterious(0.02) probably_damaging(0.985) TCGA-06-0155-01 20 35663716 35663716 T A RBL1 Missense_Mutation p.Q700L 0.33 deleterious(0) benign(0.06) TCGA-06-0155-01 21 41514514 41514514 A T DSCAM Missense_Mutation p.V1126D 0.28 deleterious(0) probably_damaging(0.949) TCGA-06-0155-01 21 43230603 43230603 G A PRDM15 Silent p.H1219H 0.27 TCGA-06-0155-01 22 37524874 37524874 C T IL2RB Silent p.S306S 0.44 TCGA-06-0155-01 2 167085353 167085353 T A SCN9A Missense_Mutation p.N1341Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-0155-01 2 179437058 179437058 T C TTN Missense_Mutation p.I24601V 0.39 TCGA-06-0155-01 2 30966369 30966369 C T CAPN13 Missense_Mutation p.R442H 0.40 tolerated(0.13) possibly_damaging(0.738) TCGA-06-0155-01 2 71871111 71871111 A C DYSF Missense_Mutation p.D1515A 0.34 deleterious(0) probably_damaging(1) TCGA-06-0155-01 3 147130368 147130368 G A ZIC1 Missense_Mutation p.R349H 0.25 deleterious(0) probably_damaging(0.992) TCGA-06-0155-01 3 42917430 42917430 C T CYP8B1 5'UTR 0.31 TCGA-06-0155-01 3 49836331 49836331 C T CDHR4 Silent p.V141V 0.51 TCGA-06-0155-01 3 52554842 52554842 G A STAB1 Missense_Mutation p.R1910H 0.06 tolerated(0.44) benign(0.002) TCGA-06-0155-01 4 122254151 122254151 G A QRFPR Missense_Mutation p.P208S 0.37 tolerated(0.4) benign(0.042) TCGA-06-0155-01 4 70596339 70596339 T G SULT1B1 Missense_Mutation p.I220L 0.35 tolerated(0.39) benign(0.003) TCGA-06-0155-01 4 81967402 81967402 A G BMP3 Missense_Mutation p.H276R 0.30 tolerated(0.19) benign(0.008) TCGA-06-0155-01 5 112179855 112179855 A G APC 3'UTR 0.35 TCGA-06-0155-01 5 140214744 140214744 C T PCDHA7 Missense_Mutation p.T259M 0.24 deleterious_low_confidence(0) possibly_damaging(0.831) TCGA-06-0155-01 5 140857767 140857770 TTCT - PCDHGC3 Frame_Shift_Del p.S697* 0.44 TCGA-06-0155-01 5 155935645 155935645 G T SGCD Missense_Mutation p.G76V 0.38 deleterious(0) probably_damaging(0.995) TCGA-06-0155-01 5 180048669 180048669 C T FLT4 Silent p.A631A 0.37 TCGA-06-0155-01 5 40853779 40853779 G A CARD6 Missense_Mutation p.S782N 0.37 tolerated(0.43) benign(0.006) TCGA-06-0155-01 5 64766854 64766854 C T ADAMTS6 Silent p.R71R 0.33 TCGA-06-0155-01 5 71494069 71494069 A G MAP1B Silent p.A1629A 0.26 TCGA-06-0155-01 6 10887260 10887260 C - SYCP2L 5'UTR 0.73 TCGA-06-0155-01 6 122744040 122744040 C A HSF2 Silent p.T336T 0.38 TCGA-06-0155-01 6 163899861 163899861 A C QKI Missense_Mutation p.Q112P 0.41 deleterious(0) probably_damaging(0.983) TCGA-06-0155-01 6 30879553 30879553 G A GTF2H4 Intron 0.09 TCGA-06-0155-01 6 33653882 33653882 C T ITPR3 Missense_Mutation p.T1907M 0.32 deleterious(0) possibly_damaging(0.817) TCGA-06-0155-01 6 39024212 39024212 C T GLP1R Nonsense_Mutation p.R40* 0.31 TCGA-06-0155-01 6 56505355 56505355 A G DST Silent p.S155S 0.33 TCGA-06-0155-01 7 104782641 104782641 G A SRPK2 Nonsense_Mutation p.R453* 0.28 TCGA-06-0155-01 7 124404927 124404927 C G GPR37 Missense_Mutation p.R35T 0.27 deleterious_low_confidence(0.04) benign(0.1) TCGA-06-0155-01 7 26236176 26236178 CCT - HNRNPA2B1 Splice_Site p.X204_splice 0.29 TCGA-06-0155-01 7 55223543 55223543 C T EGFR Missense_Mutation p.H304Y 0.23 tolerated(1) benign(0.049) TCGA-06-0155-01 7 65751542 65751542 G A TPST1 Missense_Mutation p.G297E 0.26 tolerated(1) benign(0) TCGA-06-0155-01 8 124358469 124358469 T C ATAD2 Missense_Mutation p.I797V 0.39 deleterious(0) benign(0.1) TCGA-06-0155-01 8 145095497 145095497 G A SPATC1 Silent p.S265S 0.38 TCGA-06-0155-01 8 17726189 17726189 G A FGL1 Missense_Mutation p.A216V 0.06 tolerated(0.11) benign(0.342) TCGA-06-0155-01 8 25222153 25222153 G A DOCK5 Missense_Mutation p.R1019H 0.35 deleterious(0.01) possibly_damaging(0.803) TCGA-06-0155-01 8 52733157 52733157 C A PCMTD1 Missense_Mutation p.R276S 0.04 tolerated(0.06) benign(0.071) TCGA-06-0155-01 8 99718703 99718703 G C STK3 Missense_Mutation p.P254A 0.40 deleterious(0.01) possibly_damaging(0.863) TCGA-06-0155-01 X 125299171 125299171 C T DCAF12L2 Missense_Mutation p.R246H 0.66 tolerated(0.52) benign(0.009) TCGA-06-0155-01 X 142718314 142718314 C T SLITRK4 Missense_Mutation p.R204H 0.57 tolerated(0.11) probably_damaging(0.998) TCGA-06-0155-01 X 142795437 142795437 C T SPANXN2 Missense_Mutation p.V81I 0.79 tolerated(0.85) benign(0.1) TCGA-06-0155-01 X 44922695 44922695 G C KDM6A Missense_Mutation p.R519P 0.04 tolerated(0.08) benign(0.004) TCGA-06-0157-01 10 118439024 118439024 G A HSPA12A Missense_Mutation p.R426W 0.12 deleterious(0) possibly_damaging(0.608) TCGA-06-0157-01 10 133949482 133949482 A - JAKMIP3 Frame_Shift_Del p.N341Tfs*22 0.45 TCGA-06-0157-01 10 89690819 89690820 TA - PTEN Frame_Shift_Del p.Y76* 0.38 TCGA-06-0157-01 10 91344129 91344129 C T PANK1 3'UTR 0.41 TCGA-06-0157-01 11 2466624 2466624 C T KCNQ1 Missense_Mutation p.P99L 0.49 deleterious(0.01) probably_damaging(0.943) TCGA-06-0157-01 11 56258561 56258561 A G OR5M8 Missense_Mutation p.C96R 0.05 deleterious(0.01) benign(0.417) TCGA-06-0157-01 11 63137403 63137403 A G SLC22A9 5'UTR 0.50 TCGA-06-0157-01 12 110236432 110236432 G A TRPV4 Missense_Mutation p.T380M 0.44 deleterious(0.04) benign(0.064) TCGA-06-0157-01 12 11061487 11061487 G A TAS2R13 Silent p.T137T 0.43 TCGA-06-0157-01 12 6122757 6122757 C T VWF Missense_Mutation p.R1837Q 0.36 deleterious(0.04) benign(0.229) TCGA-06-0157-01 13 110895031 110895031 C T COL4A1 Silent p.K45K 0.35 TCGA-06-0157-01 14 63316465 63316465 A T KCNH5 Missense_Mutation p.L492Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-0157-01 16 3293009 3293009 G A MEFV 3'UTR 0.58 TCGA-06-0157-01 16 67984224 67984224 G A SLC12A4 Missense_Mutation p.R545W 0.35 deleterious(0.01) benign(0.046) TCGA-06-0157-01 16 701986 701986 G A WDR90 Missense_Mutation p.V334M 0.19 tolerated(0.07) benign(0.034) TCGA-06-0157-01 16 727080 727080 G A RHBDL1 Missense_Mutation p.R244H 0.36 deleterious(0.04) possibly_damaging(0.883) TCGA-06-0157-01 16 89261311 89261311 C T CDH15 Silent p.Y731Y 0.47 TCGA-06-0157-01 17 11648135 11648135 C T DNAH9 Missense_Mutation p.R2045W 0.32 probably_damaging(1) TCGA-06-0157-01 17 46198838 46198838 C A SNX11 Missense_Mutation p.P261T 0.34 tolerated_low_confidence(0.05) benign(0.004) TCGA-06-0157-01 17 76089149 76089149 G A TNRC6C Missense_Mutation p.R1366H 0.37 deleterious(0.01) possibly_damaging(0.9) TCGA-06-0157-01 17 80332216 80332216 G A UTS2R Missense_Mutation p.E6K 0.36 deleterious_low_confidence(0.01) benign(0.041) TCGA-06-0157-01 18 7023335 7023335 G A LAMA1 Silent p.G843G 0.49 TCGA-06-0157-01 19 18123908 18123908 G A ARRDC2 3'UTR 0.29 TCGA-06-0157-01 19 35842837 35842837 C T FFAR1 Missense_Mutation p.A128V 0.08 tolerated(1) benign(0.004) TCGA-06-0157-01 19 36884449 36884449 C T ZFP82 Missense_Mutation p.V265I 0.43 tolerated(0.38) probably_damaging(0.995) TCGA-06-0157-01 19 43969776 43969776 G A LYPD3 5'UTR 0.09 TCGA-06-0157-01 19 47910342 47910342 G A MEIS3 Missense_Mutation p.R376C 0.11 deleterious(0) possibly_damaging(0.851) TCGA-06-0157-01 19 52129355 52129355 C T SIGLEC5 Missense_Mutation p.R465H 0.06 tolerated(0.53) benign(0.052) TCGA-06-0157-01 19 58004984 58004984 C T ZNF419 Silent p.S354S 0.27 TCGA-06-0157-01 19 9063659 9063659 A T MUC16 Silent p.S7929S 0.40 TCGA-06-0157-01 1 158585171 158585171 G A SPTA1 Missense_Mutation p.A2208V 0.36 deleterious(0.04) benign(0.069) TCGA-06-0157-01 1 16065984 16065984 G A SLC25A34 3'UTR 0.50 TCGA-06-0157-01 1 173878724 173878724 G A SERPINC1 Silent p.V373V 0.42 TCGA-06-0157-01 1 202566072 202566072 G A SYT2 Missense_Mutation p.T358I 0.43 deleterious(0.01) probably_damaging(1) TCGA-06-0157-01 1 209907741 209907741 C T HSD11B1 Missense_Mutation p.R252C 0.40 deleterious(0) probably_damaging(1) TCGA-06-0157-01 1 237777626 237777626 C T RYR2 Missense_Mutation p.T1733M 0.34 probably_damaging(0.958) TCGA-06-0157-01 20 24565630 24565630 G A SYNDIG1 Splice_Site p.X206_splice 0.48 TCGA-06-0157-01 20 3735070 3735070 C T C20orf27 Missense_Mutation p.R158H 0.44 tolerated(0.09) benign(0.004) TCGA-06-0157-01 20 62168644 62168644 G T PTK6 Missense_Mutation p.H8Q 0.35 tolerated(0.3) benign(0.125) TCGA-06-0157-01 20 7864254 7864254 C T HAO1 Missense_Mutation p.V367I 0.33 tolerated(0.55) benign(0.001) TCGA-06-0157-01 21 31744289 31744289 G A KRTAP13-2 Silent p.Y81Y 0.34 TCGA-06-0157-01 2 162280004 162280004 A G TBR1 Missense_Mutation p.N439D 0.30 deleterious(0.04) possibly_damaging(0.899) TCGA-06-0157-01 2 179542633 179542633 G A TTN Missense_Mutation p.R11336C 0.11 TCGA-06-0157-01 2 183053766 183053766 C T PDE1A Missense_Mutation p.G399R 0.42 deleterious(0) probably_damaging(1) TCGA-06-0157-01 2 27803330 27803330 T C C2orf16 Silent p.L1297L 0.04 TCGA-06-0157-01 2 96964138 96964138 C T SNRNP200 Missense_Mutation p.A335T 0.36 tolerated(0.06) benign(0.178) TCGA-06-0157-01 3 186302367 186302367 A - DNAJB11 Frame_Shift_Del p.A335Rfs*9 0.27 TCGA-06-0157-01 4 13338335 13338335 C G HSP90AB2P RNA 0.08 TCGA-06-0157-01 4 1944215 1944215 G A WHSC1 Intron 0.31 TCGA-06-0157-01 4 70361103 70361103 C G UGT2B4 Silent p.L159L 0.35 TCGA-06-0157-01 5 33461376 33461376 C G TARS Missense_Mutation p.I542M 0.46 deleterious(0.02) benign(0.107) TCGA-06-0157-01 5 3601124 3601124 G A IRX1 Silent p.P471P 0.37 TCGA-06-0157-01 6 133137703 133137703 G T RPS12 Splice_Site p.X78_splice 0.42 TCGA-06-0157-01 6 32487216 32487216 G A HLA-DRB5 Nonsense_Mutation p.R195* 0.38 TCGA-06-0157-01 7 4862114 4862114 C T RADIL Nonsense_Mutation p.W509* 0.27 TCGA-06-0157-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.93 deleterious(0.02) probably_damaging(0.974) TCGA-06-0157-01 7 82784773 82784773 G A PCLO Missense_Mutation p.P395L 0.26 possibly_damaging(0.851) TCGA-06-0157-01 7 92098811 92098811 G T ERVW-1 Silent p.P295P 0.12 TCGA-06-0157-01 8 11607632 11607632 C T GATA4 Nonsense_Mutation p.R266* 0.39 TCGA-06-0157-01 8 121432169 121432170 - T MRPL13 Frame_Shift_Ins p.L106Tfs*26 0.22 TCGA-06-0157-01 8 20022464 20022464 A T SLC18A1 Missense_Mutation p.F311I 0.44 tolerated(0.23) benign(0.395) TCGA-06-0157-01 8 39695769 39695769 C T ADAM2 5'UTR 0.46 TCGA-06-0157-01 9 33385701 33385701 T C AQP7 Missense_Mutation p.D230G 0.38 deleterious(0) probably_damaging(1) TCGA-06-0157-01 X 130407545 130407545 C T IGSF1 3'UTR 0.46 TCGA-06-0157-01 X 136113395 136113395 G A GPR101 Missense_Mutation p.R147C 0.35 deleterious(0.01) probably_damaging(0.912) TCGA-06-0157-01 X 13637337 13637337 G A EGFL6 Silent p.A386A 0.48 TCGA-06-0157-01 X 20193367 20193367 A T RPS6KA3 Missense_Mutation p.L381H 0.46 deleterious(0.01) probably_damaging(0.994) TCGA-06-0157-01 X 37553630 37553630 G T XK Missense_Mutation p.G113C 0.36 deleterious(0) probably_damaging(1) TCGA-06-0157-01 X 49048172 49048172 C T SYP Missense_Mutation p.V222M 0.39 deleterious(0.03) possibly_damaging(0.534) TCGA-06-0157-01 X 55020451 55020451 G A PFKFB1 5'UTR 0.37 TCGA-06-0157-01 X 69455983 69455983 C A AWAT1 Silent p.P83P 0.37 TCGA-06-0157-01 X 70516705 70516705 C T NONO Nonsense_Mutation p.R251* 0.39 TCGA-06-0158-01 10 47158869 47158869 C T ANXA8L1 Missense_Mutation p.A318T 0.52 tolerated(0.34) possibly_damaging(0.741) TCGA-06-0158-01 10 5238828 5238828 G T AKR1C4 5'UTR 0.62 TCGA-06-0158-01 11 22291884 22291884 G A ANO5 Missense_Mutation p.R642Q 0.12 deleterious(0.03) possibly_damaging(0.893) TCGA-06-0158-01 11 76956338 76956338 G A GDPD4 Silent p.I358I 0.30 TCGA-06-0158-01 11 88338071 88338071 G A GRM5 Silent p.A403A 0.47 TCGA-06-0158-01 11 89902152 89902152 C G NAALAD2 Missense_Mutation p.S445C 0.43 deleterious(0) probably_damaging(0.957) TCGA-06-0158-01 12 42853501 42853501 G T PRICKLE1 3'UTR 0.39 TCGA-06-0158-01 12 56755752 56755752 C G APOF Missense_Mutation p.A80P 0.45 tolerated(0.36) benign(0.084) TCGA-06-0158-01 12 68716856 68716856 C T MDM1 Silent p.R266R 0.33 TCGA-06-0158-01 14 106725451 106725451 C A IGHV3-23 Missense_Mutation p.G34V 0.15 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-06-0158-01 14 36211763 36211763 T C RALGAPA1 Silent p.L420L 0.38 TCGA-06-0158-01 15 56435018 56435018 G A RFX7 Missense_Mutation p.P120L 0.37 deleterious(0) possibly_damaging(0.744) TCGA-06-0158-01 16 4391505 4391505 G C PAM16 Missense_Mutation p.A30G 0.18 deleterious(0) possibly_damaging(0.528) TCGA-06-0158-01 16 67702586 67702586 C T C16orf86 3'UTR 0.32 TCGA-06-0158-01 16 703568 703568 C T WDR90 Missense_Mutation p.S426L 0.35 deleterious(0) probably_damaging(0.978) TCGA-06-0158-01 17 1553933 1553933 A G PRPF8 3'UTR 0.15 TCGA-06-0158-01 17 33497185 33497185 G A UNC45B Missense_Mutation p.G534S 0.33 deleterious(0) probably_damaging(0.991) TCGA-06-0158-01 17 4842250 4842250 C T SLC25A11 Missense_Mutation p.R90H 0.39 deleterious(0) probably_damaging(1) TCGA-06-0158-01 17 7340213 7340213 T A TMEM102 Silent p.A305A 0.35 TCGA-06-0158-01 17 76120076 76120076 A C TMC6 Missense_Mutation p.V359G 0.40 deleterious(0) probably_damaging(0.98) TCGA-06-0158-01 17 76989644 76989644 G C CANT1 Missense_Mutation p.I398M 0.39 deleterious(0) probably_damaging(0.96) TCGA-06-0158-01 17 78797000 78797000 G A RPTOR Silent p.P371P 0.37 TCGA-06-0158-01 17 8274702 8274702 T G KRBA2 Missense_Mutation p.N51H 0.16 deleterious_low_confidence(0.04) benign(0.295) TCGA-06-0158-01 18 66377374 66377374 G A TMX3 Missense_Mutation p.A50V 0.10 deleterious(0) probably_damaging(1) TCGA-06-0158-01 19 11526629 11526629 C T RGL3 Silent p.P207P 0.22 TCGA-06-0158-01 19 23545038 23545038 T C ZNF91 Missense_Mutation p.K248R 0.14 tolerated(0.51) probably_damaging(0.973) TCGA-06-0158-01 19 4012940 4012940 G A PIAS4 Missense_Mutation p.R16Q 0.04 deleterious(0) probably_damaging(0.997) TCGA-06-0158-01 19 40886782 40886782 C T HIPK4 Silent p.S372S 0.20 TCGA-06-0158-01 19 463966 463966 C T ODF3L2 Missense_Mutation p.V250M 0.25 tolerated(0.1) possibly_damaging(0.473) TCGA-06-0158-01 19 56320789 56320789 C T NLRP11 Missense_Mutation p.R396H 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-06-0158-01 1 154516937 154516937 C T TDRD10 Silent p.R247R 0.42 TCGA-06-0158-01 1 160784327 160784327 T G LY9 Missense_Mutation p.L283W 0.41 deleterious(0) possibly_damaging(0.723) TCGA-06-0158-01 1 207647215 207647215 C T CR2 Missense_Mutation p.T742M 0.37 tolerated(0.23) benign(0.092) TCGA-06-0158-01 1 226347010 226347010 G C ACBD3 Missense_Mutation p.Q260E 0.32 tolerated(0.26) possibly_damaging(0.759) TCGA-06-0158-01 1 229577744 229577744 T C NUP133 Silent p.L1126L 0.04 TCGA-06-0158-01 1 247836129 247836129 G T OR13G1 Missense_Mutation p.T72K 0.36 deleterious(0) benign(0.186) TCGA-06-0158-01 1 248112665 248112665 G A OR2L8 Missense_Mutation p.R169Q 0.25 tolerated(0.51) benign(0.03) TCGA-06-0158-01 20 42194845 42194845 C T SGK2 5'UTR 0.17 TCGA-06-0158-01 20 43836290 43836290 A G SEMG1 Missense_Mutation p.K118E 0.26 tolerated(0.34) probably_damaging(0.995) TCGA-06-0158-01 20 54824329 54824329 G A MC3R Missense_Mutation p.V144I 0.27 tolerated(1) benign(0.015) TCGA-06-0158-01 21 46320234 46320234 C T ITGB2 Splice_Site p.X299_splice 0.34 TCGA-06-0158-01 22 29913061 29913061 C T THOC5 Silent p.G546G 0.03 TCGA-06-0158-01 2 219222293 219222293 C T C2orf62 Missense_Mutation p.T52M 0.39 deleterious(0) probably_damaging(0.959) TCGA-06-0158-01 2 232573275 232573275 C G PTMA 5'UTR 0.38 TCGA-06-0158-01 2 44527119 44527119 C T SLC3A1 Missense_Mutation p.R301W 0.03 deleterious(0) possibly_damaging(0.846) TCGA-06-0158-01 2 54483145 54483145 C G TSPYL6 Silent p.V48V 0.36 TCGA-06-0158-01 3 130284156 130284156 G A COL6A6 Missense_Mutation p.R327Q 0.10 deleterious(0) probably_damaging(0.999) TCGA-06-0158-01 3 19575121 19575121 A T KCNH8 Missense_Mutation p.S952C 0.39 deleterious_low_confidence(0.01) benign(0.365) TCGA-06-0158-01 3 39374303 39374303 G A CCR8 Missense_Mutation p.A161T 0.47 tolerated(0.06) benign(0.081) TCGA-06-0158-01 3 49724141 49724144 CTCG - MST1 Frame_Shift_Del p.R274Sfs*251 0.30 TCGA-06-0158-01 4 175896768 175896768 C T ADAM29 Missense_Mutation p.P31L 0.08 deleterious(0.03) possibly_damaging(0.848) TCGA-06-0158-01 4 71467259 71467259 T A AMBN Missense_Mutation p.L140Q 0.40 tolerated(1) benign(0.001) TCGA-06-0158-01 5 140794507 140794507 G A PCDHGA10 Missense_Mutation p.G589S 0.34 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-06-0158-01 5 83433171 83433171 G A EDIL3 Silent p.N119N 0.35 TCGA-06-0158-01 6 146875748 146875748 G T RAB32 3'UTR 0.05 TCGA-06-0158-01 6 25966964 25966964 C T TRIM38 Nonsense_Mutation p.R72* 0.30 TCGA-06-0158-01 6 29694676 29694676 C T HLA-F Silent p.S351S 0.16 TCGA-06-0158-01 6 49704218 49704218 A G CRISP3 Silent p.D48D 0.39 TCGA-06-0158-01 7 123276864 123276864 G A ASB15 Silent p.E532E 0.39 TCGA-06-0158-01 7 135300745 135300745 G A NUP205 Missense_Mutation p.R1131H 0.37 tolerated(0.07) possibly_damaging(0.786) TCGA-06-0158-01 7 53103391 53103391 C T POM121L12 Silent p.S9S 0.32 TCGA-06-0158-01 7 55211080 55211080 G A EGFR Missense_Mutation p.R108K 0.07 deleterious(0) probably_damaging(0.998) TCGA-06-0158-01 7 55233043 55233043 G C EGFR Missense_Mutation p.G598A 0.01 deleterious(0.01) benign(0.278) TCGA-06-0158-01 7 82764904 82764904 C T PCLO Silent p.P654P 0.43 TCGA-06-0158-01 7 98254472 98254472 C T NPTX2 Silent p.N294N 0.30 TCGA-06-0158-01 8 72948640 72948640 G A TRPA1 Missense_Mutation p.T813M 0.33 deleterious(0.03) probably_damaging(1) TCGA-06-0158-01 9 131395212 131395212 T A SPTAN1 Missense_Mutation p.V2429E 0.06 deleterious(0) benign(0.001) TCGA-06-0158-01 9 135374872 135374872 G C C9orf171 Missense_Mutation p.E173Q 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-06-0158-01 X 155004303 155004303 G A SPRY3 Missense_Mutation p.R257Q 0.33 deleterious(0) probably_damaging(0.932) TCGA-06-0158-01 X 79699116 79699116 A T FAM46D Missense_Mutation p.R360W 0.83 tolerated(0.18) benign(0) TCGA-06-0165-01 2 241556456 241556456 A G GPR35 Intron 0.14 TCGA-06-0165-01 9 139642958 139642958 G A LCN6 5'UTR 0.08 TCGA-06-0166-01 10 135012314 135012314 A C KNDC1 Missense_Mutation p.N768H 0.27 tolerated(0.44) possibly_damaging(0.462) TCGA-06-0166-01 10 43601972 43601972 C A RET Nonsense_Mutation p.S339* 0.08 TCGA-06-0166-01 10 50531485 50531485 G A C10orf71 Missense_Mutation p.E299K 0.33 tolerated(0.31) probably_damaging(0.957) TCGA-06-0166-01 10 89711882 89711882 C G PTEN Missense_Mutation p.T167S 0.32 deleterious(0.01) possibly_damaging(0.855) TCGA-06-0166-01 11 17741852 17741852 G T MYOD1 Missense_Mutation p.A175S 0.54 tolerated(0.71) benign(0.008) TCGA-06-0166-01 12 129558863 129558863 C A TMEM132D Nonsense_Mutation p.E953* 0.12 TCGA-06-0166-01 14 50862534 50862534 A G CDKL1 Missense_Mutation p.V19A 0.28 deleterious(0) probably_damaging(1) TCGA-06-0166-01 14 51197644 51197644 C G NIN Intron 0.10 TCGA-06-0166-01 14 63447847 63447847 C T KCNH5 Missense_Mutation p.A229T 0.25 deleterious(0.03) probably_damaging(0.997) TCGA-06-0166-01 15 28460793 28460793 A G HERC2 Missense_Mutation p.F2062L 0.34 benign(0.027) TCGA-06-0166-01 15 44181021 44181021 C T FRMD5 Missense_Mutation p.V260I 0.07 tolerated(1) benign(0.269) TCGA-06-0166-01 15 59186379 59186379 G A SLTM Missense_Mutation p.P464L 0.23 deleterious(0) unknown(0) TCGA-06-0166-01 15 59911701 59911701 C T GCNT3 Nonsense_Mutation p.Q422* 0.33 TCGA-06-0166-01 15 79320175 79320175 G A RASGRF1 Missense_Mutation p.T430M 0.16 deleterious(0) probably_damaging(0.997) TCGA-06-0166-01 16 10524503 10524503 G A ATF7IP2 Missense_Mutation p.R9Q 0.30 tolerated(0.28) benign(0.33) TCGA-06-0166-01 16 16218658 16218658 G A ABCC1 Silent p.V1201V 0.27 TCGA-06-0166-01 16 78064579 78064579 C T CLEC3A Silent p.N154N 0.30 TCGA-06-0166-01 17 10415407 10415407 C A MYH1 Missense_Mutation p.G417V 0.08 deleterious(0) probably_damaging(0.99) TCGA-06-0166-01 17 34864958 34864958 C T MYO19 Missense_Mutation p.V392I 0.37 deleterious(0) probably_damaging(0.998) TCGA-06-0166-01 17 41898381 41898381 C T MPP3 Missense_Mutation p.A244T 0.30 tolerated(0.21) probably_damaging(1) TCGA-06-0166-01 18 12496095 12496095 C A SPIRE1 Missense_Mutation p.G327C 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-0166-01 19 10798360 10798360 G A ILF3 Missense_Mutation p.D804N 0.21 tolerated(0.23) unknown(0) TCGA-06-0166-01 19 11233883 11233883 C A LDLR Missense_Mutation p.S725Y 0.42 deleterious(0.02) possibly_damaging(0.519) TCGA-06-0166-01 19 44981674 44981674 G A ZNF180 Nonsense_Mutation p.Q342* 0.33 TCGA-06-0166-01 19 52327921 52327921 G A FPR3 Missense_Mutation p.R307H 0.25 tolerated(0.06) benign(0.009) TCGA-06-0166-01 1 160254853 160254853 A G PEX19 Missense_Mutation p.L21P 0.17 deleterious(0) possibly_damaging(0.766) TCGA-06-0166-01 1 82456163 82456163 G C LPHN2 Missense_Mutation p.K1182N 0.17 tolerated(0.43) benign(0) TCGA-06-0166-01 20 13280130 13280130 C T ISM1 3'UTR 0.16 TCGA-06-0166-01 20 33851598 33851598 C T MMP24 Silent p.N274N 0.37 TCGA-06-0166-01 2 135960424 135960424 A G ZRANB3 Missense_Mutation p.L1040P 0.22 deleterious(0) probably_damaging(1) TCGA-06-0166-01 2 44023908 44023908 G A DYNC2LI1 Missense_Mutation p.A210T 0.18 deleterious(0.01) possibly_damaging(0.724) TCGA-06-0166-01 3 108677746 108677746 A G MORC1 3'UTR 0.06 TCGA-06-0166-01 3 108677756 108677756 A G MORC1 3'UTR 0.07 TCGA-06-0166-01 3 13379344 13379344 C T NUP210 Missense_Mutation p.G1182D 0.10 tolerated(0.05) benign(0.303) TCGA-06-0166-01 3 169099085 169099085 C A MECOM Missense_Mutation p.G113W 0.08 deleterious(0) probably_damaging(1) TCGA-06-0166-01 3 178916641 178916661 CTGTGGGGCATCCACTTGATG - PIK3CA In_Frame_Del p.L10_M16del 0.22 TCGA-06-0166-01 3 46063343 46063343 C T XCR1 Missense_Mutation p.A33T 0.22 tolerated(0.59) benign(0.001) TCGA-06-0166-01 3 53845478 53845478 G T CACNA1D 3'UTR 0.39 TCGA-06-0166-01 4 41652554 41652554 G A LIMCH1 Missense_Mutation p.E604K 0.11 deleterious(0.03) benign(0.271) TCGA-06-0166-01 5 121187974 121187974 G A FTMT Missense_Mutation p.V106M 0.35 deleterious(0.02) probably_damaging(0.915) TCGA-06-0166-01 5 141029038 141029038 C T FCHSD1 Missense_Mutation p.R100Q 0.23 deleterious(0.02) probably_damaging(1) TCGA-06-0166-01 5 180432895 180432895 G T BTNL3 3'UTR 0.11 TCGA-06-0166-01 7 82595090 82595090 T A PCLO Missense_Mutation p.K1338N 0.28 unknown(0) TCGA-06-0166-01 7 95457400 95457400 C T DYNC1I1 Missense_Mutation p.L133F 0.24 tolerated(0.07) probably_damaging(0.994) TCGA-06-0166-01 8 104427337 104427338 - G DCAF13 Frame_Shift_Ins p.A42Gfs*46 0.24 TCGA-06-0166-01 8 131124496 131124496 C G ASAP1 Missense_Mutation p.D749H 0.05 tolerated(0.1) possibly_damaging(0.67) TCGA-06-0166-01 8 42024775 42024776 - GT AP3M2 Frame_Shift_Ins p.T300Vfs*10 0.09 TCGA-06-0166-01 9 116750662 116750662 G A ZNF618 Missense_Mutation p.E47K 0.19 tolerated_low_confidence(0.16) benign(0.22) TCGA-06-0166-01 X 39932171 39932171 G A BCOR Nonsense_Mutation p.R810* 0.52 TCGA-06-0167-01 12 58009010 58009010 T C ARHGEF25 Intron 0.05 TCGA-06-0167-01 17 45905957 45905957 C T MRPL10 Silent p.R54R 0.07 TCGA-06-0167-01 2 190340200 190340200 C A WDR75 3'UTR 0.08 TCGA-06-0167-01 3 51671196 51671196 C T RAD54L2 Silent p.C453C 0.18 TCGA-06-0168-01 10 63957964 63957964 T C RTKN2 Silent p.K511K 0.52 TCGA-06-0168-01 10 89720827 89720831 CAAAG - PTEN Frame_Shift_Del p.A328* 0.41 TCGA-06-0168-01 11 55653196 55653196 G T TRIM51 Nonsense_Mutation p.E98* 0.25 TCGA-06-0168-01 11 55653197 55653197 A C TRIM51 Missense_Mutation p.E98A 0.24 deleterious(0.01) probably_damaging(0.938) TCGA-06-0168-01 11 55658647 55658647 A T TRIM51 Missense_Mutation p.I300F 0.41 tolerated(0.07) benign(0.062) TCGA-06-0168-01 11 55658914 55658914 T A TRIM51 Missense_Mutation p.C389S 0.34 tolerated(0.37) benign(0.014) TCGA-06-0168-01 11 55904831 55904831 G A OR8J3 Missense_Mutation p.R122C 0.28 deleterious(0.01) possibly_damaging(0.849) TCGA-06-0168-01 11 59210873 59210873 T C OR5A1 Missense_Mutation p.S78P 0.30 deleterious(0.01) probably_damaging(0.974) TCGA-06-0168-01 11 64607007 64607007 G A CDC42BPG Silent p.N206N 0.34 TCGA-06-0168-01 11 75718654 75718654 C G UVRAG Missense_Mutation p.P330A 0.30 deleterious(0.01) probably_damaging(0.96) TCGA-06-0168-01 11 7960190 7960190 C T OR10A3 Missense_Mutation p.R293Q 0.23 deleterious(0) benign(0.087) TCGA-06-0168-01 12 51663060 51663060 C G SMAGP Translation_Start_Site p.M1? 0.27 deleterious_low_confidence(0.02) probably_damaging(0.922) TCGA-06-0168-01 13 38237609 38237609 C T TRPC4 Silent p.T544T 0.46 TCGA-06-0168-01 14 105414255 105414255 C T AHNAK2 Silent p.P2511P 0.33 TCGA-06-0168-01 14 71209191 71209191 G A MAP3K9 Missense_Mutation p.R482W 0.36 deleterious(0) probably_damaging(0.96) TCGA-06-0168-01 15 43499445 43499445 C A EPB42 Missense_Mutation p.G454C 0.32 deleterious(0) probably_damaging(0.998) TCGA-06-0168-01 17 48697121 48697121 G A CACNA1G Silent p.L1953L 0.33 TCGA-06-0168-01 18 44559309 44559309 A C TCEB3B 3'UTR 0.40 TCGA-06-0168-01 18 46385757 46385757 A G CTIF Missense_Mutation p.M544V 0.25 deleterious(0.05) benign(0.026) TCGA-06-0168-01 19 45973902 45973902 G A FOSB Missense_Mutation p.G48R 0.33 deleterious(0.02) probably_damaging(0.956) TCGA-06-0168-01 19 46997949 46997949 G A PNMAL2 Silent p.T258T 0.16 TCGA-06-0168-01 19 47883014 47883014 C T DHX34 Silent p.S918S 0.25 TCGA-06-0168-01 1 152748961 152748961 T C LCE1F Silent p.P38P 0.14 TCGA-06-0168-01 1 156702252 156702252 G A RRNAD1 Missense_Mutation p.R139Q 0.48 tolerated(0.23) benign(0.121) TCGA-06-0168-01 1 215814045 215814045 G A USH2A Silent p.D4941D 0.43 TCGA-06-0168-01 1 228459730 228459730 G A OBSCN Missense_Mutation p.E1932K 0.21 probably_damaging(0.993) TCGA-06-0168-01 1 235969724 235969724 C T LYST Silent p.V904V 0.26 TCGA-06-0168-01 1 33134833 33134833 T G RBBP4 Missense_Mutation p.W255G 0.37 deleterious(0) probably_damaging(1) TCGA-06-0168-01 1 47399686 47399686 G A CYP4A11 Missense_Mutation p.P385L 0.53 deleterious(0.02) possibly_damaging(0.808) TCGA-06-0168-01 1 53732253 53732253 C T LRP8 Missense_Mutation p.R440Q 0.43 tolerated(0.07) possibly_damaging(0.851) TCGA-06-0168-01 20 23017312 23017312 C T SSTR4 3'UTR 0.23 TCGA-06-0168-01 2 100024503 100024507 TGATA - REV1 Frame_Shift_Del p.I811Rfs*16 0.29 TCGA-06-0168-01 2 110303622 110303625 CTTA - SEPT10 Splice_Site p.X450_splice 0.42 TCGA-06-0168-01 2 201437521 201437521 A G SGOL2 Missense_Mutation p.I818V 0.26 tolerated(0.11) benign(0.434) TCGA-06-0168-01 2 219127776 219127776 G A GPBAR1 Missense_Mutation p.R110H 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-0168-01 2 42883411 42883411 C T MTA3 Nonsense_Mutation p.R191* 0.35 TCGA-06-0168-01 4 115792048 115792048 G C NDST4 Missense_Mutation p.T532S 0.23 tolerated(0.07) probably_damaging(0.956) TCGA-06-0168-01 4 118975673 118975673 G A NDST3 Missense_Mutation p.R203H 0.32 tolerated(0.61) benign(0.001) TCGA-06-0168-01 4 177190191 177190191 C T ASB5 Silent p.S23S 0.33 TCGA-06-0168-01 4 1807889 1807889 A G FGFR3 Missense_Mutation p.K652E 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-0168-01 5 140182149 140182149 C T PCDHA3 Missense_Mutation p.S456L 0.36 deleterious_low_confidence(0) benign(0.008) TCGA-06-0168-01 5 140595338 140595338 G A PCDHB13 Missense_Mutation p.R548H 0.40 deleterious_low_confidence(0.03) benign(0.058) TCGA-06-0168-01 5 158526542 158526542 A G EBF1 5'UTR 0.36 TCGA-06-0168-01 6 148854037 148854037 G A SASH1 Missense_Mutation p.G557R 0.28 deleterious(0) probably_damaging(0.998) TCGA-06-0168-01 6 49696296 49696296 A G CRISP3 3'UTR 0.21 TCGA-06-0168-01 6 56566691 56566691 G A DST Missense_Mutation p.R106C 0.32 possibly_damaging(0.854) TCGA-06-0168-01 7 121636615 121636615 G C PTPRZ1 Missense_Mutation p.D370H 0.22 deleterious(0.01) probably_damaging(1) TCGA-06-0168-01 7 86415679 86415679 G A GRM3 Missense_Mutation p.V191M 0.23 deleterious(0) probably_damaging(1) TCGA-06-0168-01 8 27729294 27729294 G A SCARA5 3'UTR 0.43 TCGA-06-0168-01 8 70594493 70594493 A T SLCO5A1 Missense_Mutation p.C570S 0.26 deleterious(0) probably_damaging(1) TCGA-06-0168-01 9 113169426 113169426 G C SVEP1 Missense_Mutation p.D2818E 0.26 benign(0.217) TCGA-06-0168-01 9 214614 214614 G T C9orf66 Silent p.G261G 0.27 TCGA-06-0168-01 X 101972203 101972203 T C GPRASP2 Silent p.D802D 0.50 TCGA-06-0169-01 11 10580685 10580685 G A LYVE1 Silent p.T314T 0.25 TCGA-06-0169-01 11 117306485 117306485 C T DSCAML1 Missense_Mutation p.G1644D 0.27 tolerated(0.09) benign(0.373) TCGA-06-0169-01 11 118941054 118941054 C T VPS11 Missense_Mutation p.R194C 0.22 deleterious(0) probably_damaging(0.939) TCGA-06-0169-01 11 124765757 124765757 A C ROBO4 Missense_Mutation p.L244R 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-0169-01 11 18955854 18955854 A C MRGPRX1 Missense_Mutation p.L160V 0.19 tolerated(0.18) benign(0.005) TCGA-06-0169-01 11 420522 420522 T C ANO9 Missense_Mutation p.D576G 0.09 deleterious(0) probably_damaging(0.964) TCGA-06-0169-01 11 5020398 5020398 T C OR51L1 Silent p.Y62Y 0.10 TCGA-06-0169-01 11 64663974 64663974 G A ATG2A Missense_Mutation p.A1796V 0.08 deleterious(0) probably_damaging(0.998) TCGA-06-0169-01 13 46559437 46559437 T C ZC3H13 Missense_Mutation p.E572G 0.27 probably_damaging(0.993) TCGA-06-0169-01 14 20502502 20502502 C T OR4K13 Missense_Mutation p.R139Q 0.27 tolerated(0.25) benign(0.393) TCGA-06-0169-01 14 65199582 65199582 G T PLEKHG3 Missense_Mutation p.E380D 0.24 tolerated(0.47) benign(0.017) TCGA-06-0169-01 16 1507700 1507700 C T CLCN7 Missense_Mutation p.G245R 0.32 deleterious(0.02) probably_damaging(1) TCGA-06-0169-01 16 20043354 20043354 C T GPR139 Silent p.A255A 0.23 TCGA-06-0169-01 16 2147417 2147417 C T PKD1 Silent p.Q3436Q 0.18 TCGA-06-0169-01 16 32893879 32893879 C T RP11-989E6.3 5'Flank 0.14 TCGA-06-0169-01 16 84211525 84211525 C T TAF1C 3'UTR 0.23 TCGA-06-0169-01 17 39659672 39659672 C T KRT13 Missense_Mutation p.R201H 0.26 tolerated(0.06) possibly_damaging(0.597) TCGA-06-0169-01 17 39741254 39741254 C T KRT14 Missense_Mutation p.R194H 0.16 deleterious(0.03) benign(0.329) TCGA-06-0169-01 18 29340643 29340643 C T SLC25A52 Missense_Mutation p.M4I 0.27 tolerated_low_confidence(0.32) benign(0) TCGA-06-0169-01 19 39591660 39591660 C T PAPL Silent p.N293N 0.29 TCGA-06-0169-01 19 48887570 48887570 C T KDELR1 Missense_Mutation p.G174D 0.16 tolerated(0.35) benign(0.063) TCGA-06-0169-01 19 49705399 49705400 - T TRPM4 Splice_Site p.X1044_splice 0.24 TCGA-06-0169-01 19 5778542 5778542 G A CATSPERD Missense_Mutation p.R751H 0.26 tolerated(0.2) possibly_damaging(0.694) TCGA-06-0169-01 19 9067788 9067788 G - MUC16 Frame_Shift_Del p.T6553Kfs*40 0.21 TCGA-06-0169-01 1 152188002 152188002 T C HRNR Missense_Mutation p.S2035G 0.05 unknown(0) TCGA-06-0169-01 1 156617796 156617796 A G BCAN Silent p.R221R 0.19 TCGA-06-0169-01 1 158914718 158914718 C A PYHIN1 Silent p.P415P 0.31 TCGA-06-0169-01 1 248551593 248551593 G T OR2T6 Missense_Mutation p.M228I 0.23 deleterious(0.03) benign(0.098) TCGA-06-0169-01 1 67133216 67133216 C T SGIP1 Missense_Mutation p.R159C 0.26 deleterious(0) probably_damaging(0.982) TCGA-06-0169-01 1 89521850 89521850 C T GBP1 Missense_Mutation p.R406H 0.24 tolerated(0.42) benign(0.006) TCGA-06-0169-01 20 44512381 44512381 T C ZSWIM1 Missense_Mutation p.C384R 0.22 deleterious(0) probably_damaging(1) TCGA-06-0169-01 20 61938888 61938888 C G COL20A1 Silent p.V181V 0.14 TCGA-06-0169-01 21 42842599 42842599 C T TMPRSS2 Missense_Mutation p.G420R 0.25 deleterious(0) probably_damaging(1) TCGA-06-0169-01 22 32887162 32887162 C T FBXO7 Nonsense_Mutation p.R321* 0.21 TCGA-06-0169-01 22 44967271 44967271 G A LINC00207 RNA 0.28 TCGA-06-0169-01 2 131521578 131521578 C T AMER3 Missense_Mutation p.P645S 0.36 tolerated(0.11) benign(0.051) TCGA-06-0169-01 2 167085307 167085307 C T SCN9A Missense_Mutation p.R1356H 0.20 tolerated(0.05) benign(0.001) TCGA-06-0169-01 2 242173290 242173290 A G HDLBP Missense_Mutation p.I1078T 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-0169-01 2 71871138 71871138 T C DYSF Missense_Mutation p.I1524T 0.26 tolerated(0.71) benign(0.004) TCGA-06-0169-01 3 42305011 42305011 C T CCK Missense_Mutation p.E38K 0.27 tolerated(0.46) possibly_damaging(0.745) TCGA-06-0169-01 3 51425306 51425306 T C MANF Missense_Mutation p.Y121H 0.28 deleterious(0) probably_damaging(1) TCGA-06-0169-01 3 71743065 71743065 C A EIF4E3 Missense_Mutation p.A145S 0.15 tolerated(0.05) probably_damaging(0.997) TCGA-06-0169-01 4 107847047 107847047 G T DKK2 Missense_Mutation p.H94Q 0.27 tolerated(0.85) probably_damaging(0.912) TCGA-06-0169-01 4 155305544 155305544 G A DCHS2 Silent p.N70N 0.28 TCGA-06-0169-01 4 183713527 183713527 C T TENM3 Missense_Mutation p.T1901I 0.27 deleterious(0.01) possibly_damaging(0.86) TCGA-06-0169-01 5 150923883 150923883 G T FAT2 Missense_Mutation p.P2269T 0.25 possibly_damaging(0.703) TCGA-06-0169-01 5 156592924 156592924 C T FAM71B Missense_Mutation p.V86I 0.18 tolerated(0.07) possibly_damaging(0.483) TCGA-06-0169-01 5 89969926 89969926 G A GPR98 Missense_Mutation p.R1662H 0.25 probably_damaging(0.991) TCGA-06-0169-01 6 167790118 167790118 G A TCP10 Silent p.P164P 0.32 TCGA-06-0169-01 6 31322411 31322411 C T HLA-B Silent p.A348A 0.18 TCGA-06-0169-01 7 103270455 103270455 C T RELN Silent p.E878E 0.14 TCGA-06-0169-01 7 11422186 11422186 G A THSD7A Missense_Mutation p.T1490I 0.18 tolerated(0.07) benign(0.003) TCGA-06-0169-01 7 142881262 142881262 G A TAS2R39 Missense_Mutation p.D251N 0.18 tolerated(0.1) possibly_damaging(0.729) TCGA-06-0169-01 7 21599234 21599234 G A DNAH11 Missense_Mutation p.E236K 0.22 benign(0.102) TCGA-06-0169-01 7 29944136 29944136 A C WIPF3 Intron 0.20 TCGA-06-0169-01 7 44047214 44047214 G T SPDYE1 Intron 0.19 TCGA-06-0169-01 7 50742172 50742172 C G GRB10 Missense_Mutation p.R108T 0.24 tolerated(0.2) benign(0.027) TCGA-06-0169-01 7 82387763 82387763 T C PCLO 3'UTR 0.22 TCGA-06-0169-01 7 82763793 82763793 T C PCLO Missense_Mutation p.K1025E 0.19 unknown(0) TCGA-06-0169-01 7 8791118 8791118 G C NXPH1 Missense_Mutation p.A179P 0.09 tolerated(0.22) benign(0.033) TCGA-06-0169-01 8 142366995 142366995 G A GPR20 Silent p.A343A 0.20 TCGA-06-0169-01 8 30695500 30695500 G A TEX15 Missense_Mutation p.T2384M 0.20 deleterious(0.01) possibly_damaging(0.556) TCGA-06-0169-01 8 79710323 79710323 C T IL7 Missense_Mutation p.S44N 0.23 tolerated(0.18) possibly_damaging(0.846) TCGA-06-0169-01 9 101797331 101797331 G A COL15A1 Silent p.P705P 0.23 TCGA-06-0169-01 9 35045456 35045456 A G C9orf131 Missense_Mutation p.K944E 0.35 tolerated(0.15) possibly_damaging(0.54) TCGA-06-0169-01 X 124097613 124097613 G C TENM1 5'UTR 0.59 TCGA-06-0169-01 X 24094874 24094877 CAAT - EIF2S3 Frame_Shift_Del p.I465Sfs*4 0.54 TCGA-06-0171-01 11 123810393 123810393 C T OR4D5 Missense_Mutation p.R24W 0.03 deleterious(0.01) possibly_damaging(0.609) TCGA-06-0171-01 12 112910837 112910837 C G PTPN11 Missense_Mutation p.I282M 0.23 deleterious(0) benign(0.218) TCGA-06-0171-01 14 105360904 105360904 C T CEP170B Missense_Mutation p.R1466W 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-0171-01 14 106926448 106926448 G A IGHV3-43 Nonsense_Mutation p.Q32* 0.16 TCGA-06-0171-01 14 24550696 24550696 C G NRL Missense_Mutation p.D155H 0.20 deleterious(0) possibly_damaging(0.792) TCGA-06-0171-01 14 28734126 28734126 G A BNIP3P1 RNA 0.31 TCGA-06-0171-01 15 75982433 75982433 C T CSPG4 Missense_Mutation p.G325R 0.37 deleterious(0) probably_damaging(1) TCGA-06-0171-01 15 86076975 86076975 C A AKAP13 Missense_Mutation p.N114K 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-06-0171-01 15 99023998 99023998 C T FAM169B Silent p.S5S 0.29 TCGA-06-0171-01 17 1417264 1417264 G A INPP5K Silent p.V18V 0.28 TCGA-06-0171-01 17 36358982 36358982 G A RP11-1407O15.2 Missense_Mutation p.R237C 0.19 TCGA-06-0171-01 17 78938060 78938060 A G RPTOR Splice_Site p.X1314_splice 0.27 TCGA-06-0171-01 18 28671091 28671091 G T DSC2 Missense_Mutation p.T125N 0.31 deleterious(0.04) benign(0) TCGA-06-0171-01 18 55143848 55143848 G A ONECUT2 Missense_Mutation p.V470I 0.28 tolerated(0.08) probably_damaging(0.998) TCGA-06-0171-01 18 61256912 61256912 C T SERPINB13 Missense_Mutation p.T63M 0.19 deleterious(0.02) benign(0.073) TCGA-06-0171-01 18 72775723 72775723 G A ZNF407 Missense_Mutation p.A2016T 0.42 tolerated(0.31) benign(0.006) TCGA-06-0171-01 19 15535741 15535741 C T WIZ Nonsense_Mutation p.W571* 0.16 TCGA-06-0171-01 19 16024697 16024697 C T CYP4F11 Missense_Mutation p.A474T 0.12 deleterious(0) probably_damaging(0.989) TCGA-06-0171-01 19 22575371 22575371 G C ZNF98 Silent p.A222A 0.27 TCGA-06-0171-01 19 4511532 4511532 C T PLIN4 Missense_Mutation p.V800I 0.13 tolerated(0.12) possibly_damaging(0.478) TCGA-06-0171-01 19 55175475 55175475 C A LILRB4 Missense_Mutation p.P112T 0.08 deleterious(0) possibly_damaging(0.623) TCGA-06-0171-01 19 6418513 6418513 C T KHSRP Missense_Mutation p.G287E 0.19 deleterious(0) probably_damaging(1) TCGA-06-0171-01 1 11850780 11850780 A - MTHFR Frame_Shift_Del p.L643Pfs*19 0.41 TCGA-06-0171-01 1 152944576 152944576 C T SPRR4 Silent p.A70A 0.26 TCGA-06-0171-01 1 179437823 179437823 G A AXDND1 Intron 0.16 TCGA-06-0171-01 1 211093222 211093222 C T KCNH1 Missense_Mutation p.E408K 0.24 tolerated(0.43) benign(0.084) TCGA-06-0171-01 1 231377085 231377085 G T GNPAT 5'UTR 0.21 TCGA-06-0171-01 1 91784871 91784871 G A HFM1 Missense_Mutation p.H887Y 0.18 tolerated(0.18) benign(0.015) TCGA-06-0171-01 20 1961118 1961118 G A PDYN Missense_Mutation p.R206C 0.23 deleterious(0) probably_damaging(1) TCGA-06-0171-01 20 43940278 43940278 G A RBPJL Missense_Mutation p.V103M 0.19 tolerated(0.26) possibly_damaging(0.707) TCGA-06-0171-01 20 44004334 44004334 T A TP53TG5 Intron 0.27 TCGA-06-0171-01 21 14982933 14982933 C A POTED Missense_Mutation p.F128L 0.32 tolerated(0.06) benign(0.028) TCGA-06-0171-01 21 31768833 31768833 C T KRTAP13-1 Silent p.G143G 0.32 TCGA-06-0171-01 2 179542567 179542567 C - TTN Frame_Shift_Del p.V11358Ffs*110 0.22 TCGA-06-0171-01 2 219870881 219870883 GGG - CCDC108 In_Frame_Del p.P1595del 0.34 TCGA-06-0171-01 2 238253186 238253186 G A COL6A3 Missense_Mutation p.S2492L 0.32 unknown(0) TCGA-06-0171-01 2 33813426 33813426 T C FAM98A Silent p.Q166Q 0.32 TCGA-06-0171-01 3 130287203 130287203 G A COL6A6 Missense_Mutation p.R719Q 0.37 deleterious(0) probably_damaging(0.999) TCGA-06-0171-01 3 148802611 148802611 G C HLTF Nonsense_Mutation p.S29* 0.32 TCGA-06-0171-01 3 178952072 178952072 A G PIK3CA Missense_Mutation p.M1043V 0.35 tolerated(0.06) benign(0.037) TCGA-06-0171-01 3 196199643 196199643 C T RNF168 Missense_Mutation p.D255N 0.33 deleterious(0.04) benign(0.003) TCGA-06-0171-01 3 27418278 27418278 C T SLC4A7 Missense_Mutation p.V1208M 0.24 tolerated_low_confidence(0.69) benign(0.007) TCGA-06-0171-01 3 58385105 58385105 G A PXK Splice_Site p.X394_splice 0.36 TCGA-06-0171-01 3 98251271 98251271 T A GPR15 Missense_Mutation p.Y132N 0.08 deleterious(0) probably_damaging(0.984) TCGA-06-0171-01 4 189012897 189012897 C A TRIML2 Missense_Mutation p.R265M 0.32 deleterious(0.01) possibly_damaging(0.814) TCGA-06-0171-01 4 40440631 40440631 C T RBM47 Missense_Mutation p.V94M 0.34 deleterious(0.03) probably_damaging(0.92) TCGA-06-0171-01 5 13727679 13727679 A G DNAH5 Silent p.S3990S 0.25 TCGA-06-0171-01 5 13769686 13769686 T A DNAH5 Missense_Mutation p.E3215V 0.09 possibly_damaging(0.728) TCGA-06-0171-01 5 149607807 149607807 G A CAMK2A Silent p.A395A 0.40 TCGA-06-0171-01 5 150422129 150422131 AGG - TNIP1 In_Frame_Del p.L369del 0.27 TCGA-06-0171-01 5 153760181 153760181 G T GALNT10 Missense_Mutation p.D310Y 0.23 deleterious(0) probably_damaging(0.982) TCGA-06-0171-01 5 52780105 52780105 T C FST Missense_Mutation p.Y235H 0.06 tolerated(0.55) probably_damaging(1) TCGA-06-0171-01 6 130505305 130505305 G A SAMD3 Silent p.D199D 0.42 TCGA-06-0171-01 6 134210609 134210609 T C TCF21 Missense_Mutation p.M25T 0.44 tolerated_low_confidence(0.43) benign(0.003) TCGA-06-0171-01 6 30675721 30675721 C G MDC1 Missense_Mutation p.E879Q 0.29 deleterious(0.02) benign(0.025) TCGA-06-0171-01 6 51799064 51799064 G A PKHD1 Missense_Mutation p.L1989F 0.28 deleterious(0) probably_damaging(1) TCGA-06-0171-01 7 138235836 138235836 G A TRIM24 Missense_Mutation p.R391H 0.28 deleterious(0) possibly_damaging(0.635) TCGA-06-0171-01 7 142573221 142573221 C A TRPV6 Missense_Mutation p.Q374H 0.25 deleterious(0.01) benign(0.078) TCGA-06-0171-01 7 150703990 150703990 C T NOS3 Missense_Mutation p.R612C 0.11 deleterious(0) probably_damaging(0.998) TCGA-06-0171-01 7 31692423 31692423 G T CCDC129 Intron 0.19 TCGA-06-0171-01 7 31792789 31792789 G A PDE1C 3'UTR 0.24 TCGA-06-0171-01 8 105001613 105001613 G A RIMS2 Missense_Mutation p.R1003H 0.19 tolerated_low_confidence(0.1) benign(0.003) TCGA-06-0171-01 8 11163732 11163732 A C MTMR9 Missense_Mutation p.T209P 0.10 tolerated(0.89) benign(0.009) TCGA-06-0171-01 8 52773608 52773608 G A PCMTD1 Missense_Mutation p.A35V 0.10 deleterious(0) possibly_damaging(0.832) TCGA-06-0171-01 9 104356906 104356906 C T PPP3R2 Missense_Mutation p.D103N 0.34 deleterious(0) probably_damaging(0.952) TCGA-06-0171-01 9 138588634 138588634 G A SOHLH1 Missense_Mutation p.A162V 0.26 tolerated_low_confidence(0.58) benign(0) TCGA-06-0171-01 9 139752001 139752001 G A MAMDC4 Nonsense_Mutation p.W763* 0.40 TCGA-06-0171-01 9 33258950 33258950 C G BAG1 Missense_Mutation p.E249Q 0.25 tolerated(0.08) benign(0.419) TCGA-06-0171-01 9 33258984 33258984 C G BAG1 Missense_Mutation p.E237D 0.24 deleterious(0.04) benign(0.209) TCGA-06-0171-01 9 33259020 33259020 C A BAG1 Missense_Mutation p.Q225H 0.25 deleterious(0.02) benign(0.007) TCGA-06-0171-01 9 96080326 96080326 C T WNK2 3'UTR 0.30 TCGA-06-0173-01 10 90699345 90699345 C T ACTA2 Missense_Mutation p.E243K 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.861) TCGA-06-0173-01 11 101815013 101815013 G A KIAA1377 Missense_Mutation p.R89Q 0.36 tolerated(0.21) benign(0.286) TCGA-06-0173-01 11 122653798 122653798 G A UBASH3B Silent p.V213V 0.42 TCGA-06-0173-01 11 130005535 130005535 G A APLP2 Missense_Mutation p.V588M 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-0173-01 11 4703067 4703067 C G OR51E2 Missense_Mutation p.G292A 0.34 deleterious(0.03) benign(0.009) TCGA-06-0173-01 11 55703533 55703533 A T OR5I1 Missense_Mutation p.F115Y 0.28 tolerated(0.07) probably_damaging(0.98) TCGA-06-0173-01 11 63174115 63174115 G A SLC22A9 Missense_Mutation p.R407Q 0.40 deleterious(0.05) possibly_damaging(0.867) TCGA-06-0173-01 12 101520783 101520783 C T ANO4 Missense_Mutation p.R900C 0.39 deleterious(0.01) probably_damaging(0.921) TCGA-06-0173-01 12 130184923 130184923 G C TMEM132D Missense_Mutation p.L134V 0.34 tolerated(0.23) benign(0.018) TCGA-06-0173-01 12 30888067 30888067 C T CAPRIN2 Missense_Mutation p.R215Q 0.35 tolerated(0.14) possibly_damaging(0.515) TCGA-06-0173-01 12 81747072 81747072 C A PPFIA2 Missense_Mutation p.G607V 0.38 deleterious(0.01) benign(0.169) TCGA-06-0173-01 13 103491945 103491945 C T BIVM-ERCC5 Silent p.I386I 0.41 TCGA-06-0173-01 13 111532388 111532388 G A ANKRD10 Missense_Mutation p.P287S 0.31 tolerated(0.17) benign(0.035) TCGA-06-0173-01 13 28931760 28931760 C A FLT1 Missense_Mutation p.G727C 0.38 deleterious(0) probably_damaging(1) TCGA-06-0173-01 15 43552685 43552685 G A TGM5 Missense_Mutation p.R35W 0.39 deleterious(0) probably_damaging(1) TCGA-06-0173-01 15 74315385 74315385 C T PML Silent p.A273A 0.53 TCGA-06-0173-01 16 22142922 22142922 C T VWA3A Missense_Mutation p.R582W 0.34 deleterious(0) possibly_damaging(0.901) TCGA-06-0173-01 16 3490932 3490932 C A ZNF597 Missense_Mutation p.G12V 0.41 tolerated(0.06) probably_damaging(0.927) TCGA-06-0173-01 16 48180450 48180450 C A ABCC12 5'UTR 0.55 TCGA-06-0173-01 17 11523026 11523026 G T DNAH9 Missense_Mutation p.K426N 0.23 benign(0.026) TCGA-06-0173-01 17 26861357 26861357 C T FOXN1 Silent p.P312P 0.22 TCGA-06-0173-01 17 33768202 33768202 C T SLFN13 Silent p.L702L 0.64 TCGA-06-0173-01 17 4455265 4455265 C T MYBBP1A Silent p.A311A 0.54 TCGA-06-0173-01 17 7132476 7132476 T C DVL2 Missense_Mutation p.E312G 0.04 deleterious(0) probably_damaging(0.987) TCGA-06-0173-01 17 7674216 7674216 A T DNAH2 Missense_Mutation p.I1443F 0.05 benign(0.012) TCGA-06-0173-01 18 28598687 28598687 C A DSC3 Missense_Mutation p.C341F 0.41 deleterious(0) probably_damaging(0.959) TCGA-06-0173-01 18 3067533 3067533 G A MYOM1 Silent p.N1595N 0.37 TCGA-06-0173-01 18 43493732 43493732 C T EPG5 Missense_Mutation p.R1252Q 0.04 tolerated(0.17) probably_damaging(0.947) TCGA-06-0173-01 18 70417298 70417298 G A NETO1 Missense_Mutation p.R514W 0.46 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-06-0173-01 19 13051173 13051173 G T CALR Silent p.L203L 0.35 TCGA-06-0173-01 19 13340971 13340971 C T CACNA1A Missense_Mutation p.R1818Q 0.15 benign(0.417) TCGA-06-0173-01 19 22785312 22785312 C T AC011467.1 5'Flank 0.12 TCGA-06-0173-01 19 24102380 24102380 T G ZNF726 Intron 0.49 TCGA-06-0173-01 19 36633602 36633602 G T CAPNS1 Missense_Mutation p.V98F 0.34 tolerated(0.23) possibly_damaging(0.846) TCGA-06-0173-01 19 42132051 42132051 G A CEACAM4 Silent p.D116D 0.30 TCGA-06-0173-01 19 44933285 44933285 G A ZNF229 Silent p.S557S 0.31 TCGA-06-0173-01 19 45021184 45021184 C T CEACAM20 RNA 0.37 TCGA-06-0173-01 19 48668866 48668866 G A LIG1 5'UTR 0.04 TCGA-06-0173-01 19 54756388 54756388 G T LILRB5 Missense_Mutation p.A500D 0.08 deleterious(0.04) possibly_damaging(0.66) TCGA-06-0173-01 19 54967619 54967619 C A LENG8 Silent p.R474R 0.45 TCGA-06-0173-01 19 55146733 55146733 A G LILRB1 Missense_Mutation p.Q529R 0.29 deleterious(0) benign(0.037) TCGA-06-0173-01 19 56691958 56691958 C T GALP Nonsense_Mutation p.R31* 0.11 TCGA-06-0173-01 19 9069201 9069201 C T MUC16 Missense_Mutation p.S6082N 0.30 unknown(0) TCGA-06-0173-01 1 104234148 104234148 G A AMY1B Silent p.G321G 0.10 TCGA-06-0173-01 1 104234204 104234204 G A AMY1B Missense_Mutation p.P303S 0.13 tolerated(0.14) benign(0.052) TCGA-06-0173-01 1 150602015 150602015 A T ENSA 5'UTR 0.40 TCGA-06-0173-01 1 156697400 156697400 G C ISG20L2 Silent p.P15P 0.07 TCGA-06-0173-01 1 20107156 20107156 C T TMCO4 Silent p.R32R 0.27 TCGA-06-0173-01 1 204943900 204943900 G A NFASC Missense_Mutation p.A503T 0.32 deleterious(0) probably_damaging(0.978) TCGA-06-0173-01 1 228520994 228520994 C T OBSCN Missense_Mutation p.R6233C 0.45 probably_damaging(0.992) TCGA-06-0173-01 1 247654765 247654765 C T OR2W5 RNA 0.36 TCGA-06-0173-01 1 38049466 38049466 A - GNL2 Splice_Site p.X212_splice 0.09 TCGA-06-0173-01 20 49366649 49366649 C T PARD6B Missense_Mutation p.P248L 0.26 deleterious(0) probably_damaging(1) TCGA-06-0173-01 20 62316891 62316891 G A RTEL1 Missense_Mutation p.D427N 0.23 deleterious(0.03) benign(0.067) TCGA-06-0173-01 22 19870868 19870868 C T TXNRD2 Missense_Mutation p.A356T 0.48 deleterious(0) probably_damaging(0.987) TCGA-06-0173-01 2 204002914 204002914 T C NBEAL1 Missense_Mutation p.I1503T 0.06 deleterious(0.01) benign(0.017) TCGA-06-0173-01 2 21235218 21235218 C T APOB Missense_Mutation p.D1508N 0.05 benign(0.017) TCGA-06-0173-01 2 217234886 217234886 C T MARCH4 Missense_Mutation p.R33H 0.31 tolerated_low_confidence(0.12) probably_damaging(0.964) TCGA-06-0173-01 2 26533656 26533656 G T GPR113 Silent p.P980P 0.29 TCGA-06-0173-01 3 108627021 108627021 C A GUCA1C Missense_Mutation p.A160S 0.41 deleterious(0.03) benign(0.006) TCGA-06-0173-01 3 111697949 111697949 C T ABHD10 Missense_Mutation p.P14L 0.45 deleterious_low_confidence(0.04) probably_damaging(0.997) TCGA-06-0173-01 3 9839460 9839463 AGGT - ARPC4 Splice_Site p.X60_splice 0.47 TCGA-06-0173-01 4 113510967 113510968 TT - C4orf21 Frame_Shift_Del p.D1015* 0.27 TCGA-06-0173-01 4 155670163 155670163 C T LRAT Missense_Mutation p.R190C 0.39 tolerated(0.07) benign(0.066) TCGA-06-0173-01 4 189068289 189068289 G T TRIML1 Missense_Mutation p.W390C 0.42 deleterious(0) probably_damaging(1) TCGA-06-0173-01 4 7802222 7802222 G A AFAP1 Missense_Mutation p.H405Y 0.05 deleterious(0) probably_damaging(1) TCGA-06-0173-01 5 114607281 114607281 C T CCDC112 Missense_Mutation p.E321K 0.21 tolerated(0.47) benign(0.203) TCGA-06-0173-01 5 167674863 167674863 C T TENM2 Missense_Mutation p.R2307W 0.35 deleterious(0) probably_damaging(1) TCGA-06-0173-01 5 26902711 26902711 T A CDH9 Missense_Mutation p.D376V 0.13 deleterious(0) probably_damaging(0.996) TCGA-06-0173-01 5 77805969 77805969 G A LHFPL2 Missense_Mutation p.A23V 0.06 tolerated(0.07) possibly_damaging(0.903) TCGA-06-0173-01 6 106967934 106967934 T C AIM1 Missense_Mutation p.S543P 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.851) TCGA-06-0173-01 6 121642861 121642861 T C TBC1D32 Missense_Mutation p.T79A 0.36 tolerated(0.25) benign(0.007) TCGA-06-0173-01 6 151939320 151939320 G A CCDC170 3'UTR 0.12 TCGA-06-0173-01 6 159653416 159653416 G A FNDC1 Silent p.A624A 0.41 TCGA-06-0173-01 6 160679423 160679423 G A SLC22A2 Missense_Mutation p.R123W 0.45 deleterious(0.05) possibly_damaging(0.846) TCGA-06-0173-01 6 29408233 29408233 G A OR10C1 Silent p.A147A 0.42 TCGA-06-0173-01 6 34101001 34101001 G A GRM4 Silent p.N91N 0.33 TCGA-06-0173-01 6 38704936 38704936 A G DNAH8 Missense_Mutation p.T69A 0.41 benign(0.002) TCGA-06-0173-01 7 106524646 106524646 G C PIK3CG Missense_Mutation p.C936S 0.22 deleterious(0) probably_damaging(0.982) TCGA-06-0173-01 7 123600028 123600028 G A SPAM1 Intron 0.28 TCGA-06-0173-01 7 128038490 128038490 G A IMPDH1 Missense_Mutation p.A351V 0.37 deleterious(0.04) benign(0.299) TCGA-06-0173-01 7 143632969 143632969 T A OR2F2 Missense_Mutation p.L215Q 0.22 deleterious(0) probably_damaging(0.992) TCGA-06-0173-01 7 147914464 147914464 G T CNTNAP2 Missense_Mutation p.R1032I 0.06 tolerated(0.43) benign(0.158) TCGA-06-0173-01 7 156976584 156976584 A T UBE3C Missense_Mutation p.E335V 0.14 tolerated(0.13) benign(0.074) TCGA-06-0173-01 7 43519279 43519279 G A HECW1 Missense_Mutation p.R1057H 0.31 deleterious(0.03) probably_damaging(0.953) TCGA-06-0173-01 7 72892641 72892641 T A BAZ1B Missense_Mutation p.I384F 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.759) TCGA-06-0173-01 8 105001535 105001535 G A RIMS2 Missense_Mutation p.R977Q 0.30 tolerated_low_confidence(0.35) possibly_damaging(0.86) TCGA-06-0173-01 8 144947336 144947336 G A EPPK1 Missense_Mutation p.T29M 0.44 benign(0.002) TCGA-06-0173-01 8 31497984 31497984 G C NRG1 Missense_Mutation p.V15L 0.30 deleterious(0.01) benign(0.205) TCGA-06-0173-01 8 70515453 70515453 A T SULF1 Missense_Mutation p.D363V 0.41 deleterious(0) probably_damaging(1) TCGA-06-0173-01 9 114874102 114874102 G A SUSD1 Missense_Mutation p.R335W 0.10 tolerated(0.07) possibly_damaging(0.836) TCGA-06-0173-01 9 133927946 133927946 G A LAMC3 Missense_Mutation p.G567R 0.38 tolerated(0.4) benign(0.036) TCGA-06-0173-01 9 214916 214916 G A C9orf66 Missense_Mutation p.R161C 0.67 tolerated_low_confidence(0.11) benign(0) TCGA-06-0173-01 X 47001797 47001797 T C NDUFB11 Silent p.K137K 0.49 TCGA-06-0173-01 X 48652346 48652346 G A GATA1 Silent p.G339G 0.29 TCGA-06-0173-01 X 67742719 67742719 G T YIPF6 Silent p.R184R 0.37 TCGA-06-0173-01 X 72667262 72667262 A G CDX4 Missense_Mutation p.H58R 0.29 deleterious(0.01) benign(0.197) TCGA-06-0173-01 X 88009244 88009244 T C CPXCR1 Missense_Mutation p.F277L 0.32 tolerated(1) possibly_damaging(0.682) TCGA-06-0174-01 10 102510548 102510548 C T PAX2 Nonsense_Mutation p.R104* 0.90 TCGA-06-0174-01 10 24790356 24790356 C T KIAA1217 Missense_Mutation p.T628M 0.09 deleterious(0.05) benign(0.374) TCGA-06-0174-01 10 28229528 28229528 A C ARMC4 Missense_Mutation p.I650M 0.55 deleterious(0) probably_damaging(0.994) TCGA-06-0174-01 10 45799324 45799324 G A OR13A1 Missense_Mutation p.R183C 0.80 deleterious(0) probably_damaging(0.932) TCGA-06-0174-01 10 98079146 98079146 C T DNTT Missense_Mutation p.T169M 0.88 deleterious(0) probably_damaging(0.999) TCGA-06-0174-01 11 111797066 111797066 G A C11orf52 3'UTR 0.12 TCGA-06-0174-01 11 122944226 122944226 G T CLMP Missense_Mutation p.P360T 0.42 tolerated(0.22) benign(0.021) TCGA-06-0174-01 11 27360573 27360573 C T CCDC34 Missense_Mutation p.S306N 0.50 tolerated(0.53) benign(0.034) TCGA-06-0174-01 11 55433358 55433358 G T OR4C6 Missense_Mutation p.S239I 0.03 tolerated_low_confidence(0.47) benign(0.013) TCGA-06-0174-01 12 126004117 126004117 C T TMEM132B Silent p.V408V 0.48 TCGA-06-0174-01 12 129360558 129360558 C T GLT1D1 Silent p.C56C 0.41 TCGA-06-0174-01 12 32491868 32491868 G C BICD1 Missense_Mutation p.G907R 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.578) TCGA-06-0174-01 12 50232500 50232500 C T BCDIN3D Missense_Mutation p.G178D 0.52 deleterious(0) probably_damaging(1) TCGA-06-0174-01 12 6923329 6923329 G A CD4 Missense_Mutation p.R79H 0.04 deleterious(0) probably_damaging(0.999) TCGA-06-0174-01 12 69653833 69653833 G T CPSF6 Missense_Mutation p.G442V 0.61 tolerated(0.08) possibly_damaging(0.897) TCGA-06-0174-01 13 20409775 20409775 A G ZMYM5 3'Flank 0.42 TCGA-06-0174-01 14 31582555 31582555 C - HECTD1 Frame_Shift_Del p.E1998Kfs*12 0.35 TCGA-06-0174-01 14 47120929 47120929 C T RPL10L Missense_Mutation p.R4H 0.44 tolerated(0.07) benign(0.017) TCGA-06-0174-01 14 75520272 75520272 C T ACYP1 Missense_Mutation p.V59M 0.38 deleterious(0.02) probably_damaging(0.957) TCGA-06-0174-01 15 42111153 42111153 C T MAPKBP1 Silent p.N769N 0.43 TCGA-06-0174-01 16 1129417 1129417 C T SSTR5 Silent p.G183G 0.55 TCGA-06-0174-01 16 19451842 19451842 C T TMC5 Missense_Mutation p.P161L 0.40 deleterious_low_confidence(0) possibly_damaging(0.676) TCGA-06-0174-01 16 21689852 21689852 C T OTOA Missense_Mutation p.T6M 0.48 tolerated_low_confidence(0.06) possibly_damaging(0.676) TCGA-06-0174-01 16 27518426 27518426 C T GTF3C1 Missense_Mutation p.V432M 0.43 deleterious(0.03) possibly_damaging(0.73) TCGA-06-0174-01 16 67425086 67425086 T C TPPP3 5'UTR 0.55 TCGA-06-0174-01 16 70972527 70972527 G A HYDIN Missense_Mutation p.R2329W 0.29 probably_damaging(0.988) TCGA-06-0174-01 17 33504108 33504108 G A UNC45B Missense_Mutation p.A702T 0.56 tolerated(0.8) benign(0.026) TCGA-06-0174-01 17 62025418 62025418 G A SCN4A Silent p.F1050F 0.49 TCGA-06-0174-01 17 79170626 79170626 C T AZI1 Missense_Mutation p.A592T 0.57 tolerated(0.12) benign(0.049) TCGA-06-0174-01 17 8701786 8701786 C A MFSD6L Missense_Mutation p.G218V 0.37 tolerated(0.48) benign(0.007) TCGA-06-0174-01 19 35793483 35793483 C T MAG Missense_Mutation p.T368M 0.24 tolerated(0.07) possibly_damaging(0.462) TCGA-06-0174-01 19 38958338 38958338 C T RYR1 Silent p.F1089F 0.26 TCGA-06-0174-01 19 41700569 41700569 G A CYP2S1 Missense_Mutation p.G100S 0.34 deleterious(0.02) probably_damaging(1) TCGA-06-0174-01 19 56424553 56424553 G A NLRP13 Silent p.D210D 0.29 TCGA-06-0174-01 19 8162272 8162272 C T FBN3 Missense_Mutation p.A1730T 0.11 tolerated(0.18) benign(0.045) TCGA-06-0174-01 1 1149465 1149465 C T TNFRSF4 Missense_Mutation p.A15T 0.67 deleterious(0.01) unknown(0) TCGA-06-0174-01 1 145594170 145594170 A T POLR3C Silent p.S464S 0.45 TCGA-06-0174-01 1 165532851 165532851 C A LRRC52 Missense_Mutation p.D244E 0.47 deleterious(0) probably_damaging(0.999) TCGA-06-0174-01 1 169698757 169698757 T C SELE Missense_Mutation p.N258S 0.45 tolerated(1) benign(0.002) TCGA-06-0174-01 1 24710467 24710467 G T STPG1 Nonsense_Mutation p.Y72* 0.04 TCGA-06-0174-01 1 43213879 43213879 G A LEPRE1 Silent p.R610R 0.43 TCGA-06-0174-01 1 78560730 78560730 G A GIPC2 Missense_Mutation p.R174H 0.46 deleterious(0.01) benign(0.365) TCGA-06-0174-01 1 82456862 82456862 C T LPHN2 3'UTR 0.24 TCGA-06-0174-01 20 44506102 44506102 G A ZSWIM3 Missense_Mutation p.R302H 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-06-0174-01 21 15745922 15745922 A C HSPA13 3'UTR 0.46 TCGA-06-0174-01 22 24179323 24179323 A G DERL3 Missense_Mutation p.I181T 0.41 tolerated(0.11) benign(0.06) TCGA-06-0174-01 22 32909719 32909719 C T SYN3 Missense_Mutation p.R568H 0.34 deleterious(0) probably_damaging(0.998) TCGA-06-0174-01 22 42458918 42458918 G A NAGA Silent p.S290S 0.35 TCGA-06-0174-01 2 103149061 103149061 G T SLC9A4 Missense_Mutation p.V771F 0.32 tolerated(0.06) benign(0.403) TCGA-06-0174-01 2 159519424 159519424 G A PKP4 Missense_Mutation p.V743M 0.41 deleterious(0.03) possibly_damaging(0.833) TCGA-06-0174-01 2 190531945 190531945 A G ASNSD1 Missense_Mutation p.M363V 0.55 tolerated(0.32) benign(0.001) TCGA-06-0174-01 2 31595165 31595165 G A XDH Silent p.D595D 0.44 TCGA-06-0174-01 2 37121134 37121153 CTCGATCTTCACCGCTGTCA - STRN Frame_Shift_Del p.D274Yfs*9 0.36 TCGA-06-0174-01 3 109049223 109049223 T G DPPA4 Intron 0.42 TCGA-06-0174-01 3 2861249 2861249 G A CNTN4 Silent p.P146P 0.33 TCGA-06-0174-01 3 32933041 32933041 G A TRIM71 Missense_Mutation p.R782H 0.39 deleterious(0.05) benign(0.082) TCGA-06-0174-01 4 186334930 186334930 T C UFSP2 Missense_Mutation p.I261V 0.49 deleterious(0.03) benign(0.005) TCGA-06-0174-01 4 55133834 55133834 G C PDGFRA Missense_Mutation p.W349C 0.70 deleterious(0) probably_damaging(1) TCGA-06-0174-01 5 10262653 10262653 C A CCT5 Missense_Mutation p.R414S 0.36 deleterious(0.03) benign(0.229) TCGA-06-0174-01 5 140250296 140250296 G A PCDHA11 Silent p.A536A 0.20 TCGA-06-0174-01 5 170351426 170351426 C T RANBP17 Missense_Mutation p.T447M 0.41 tolerated(0.08) possibly_damaging(0.84) TCGA-06-0174-01 5 53815264 53815264 C G SNX18 Silent p.A494A 0.46 TCGA-06-0174-01 6 132203516 132203516 G C ENPP1 Missense_Mutation p.C711S 0.04 deleterious(0.01) probably_damaging(0.982) TCGA-06-0174-01 6 51890717 51890717 C T PKHD1 Silent p.A1297A 0.37 TCGA-06-0174-01 7 100197689 100197689 C T FBXO24 Silent p.C452C 0.24 TCGA-06-0174-01 7 114210910 114210910 G A FOXP2 Missense_Mutation p.D103N 0.03 tolerated_low_confidence(0.76) benign(0.004) TCGA-06-0174-01 7 138314843 138314843 G T SVOPL Missense_Mutation p.L272I 0.22 deleterious(0) possibly_damaging(0.855) TCGA-06-0174-01 7 142334692 142334692 T C TRBV20-1 Silent p.R38R 0.30 TCGA-06-0174-01 7 150699051 150699051 C T NOS3 Missense_Mutation p.R549W 0.35 deleterious(0) possibly_damaging(0.788) TCGA-06-0174-01 7 33397475 33397475 C T BBS9 Nonsense_Mutation p.R521* 0.26 TCGA-06-0174-01 7 36571797 36571797 C T AOAH Missense_Mutation p.G461S 0.28 deleterious(0.05) possibly_damaging(0.455) TCGA-06-0174-01 7 37989842 37989842 T C EPDR1 Silent p.Y173Y 0.16 TCGA-06-0174-01 7 54612435 54612435 G A VSTM2A Missense_Mutation p.R67Q 0.28 deleterious(0.01) possibly_damaging(0.621) TCGA-06-0174-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.06 deleterious(0) possibly_damaging(0.75) TCGA-06-0174-01 7 55233091 55233091 G A EGFR Missense_Mutation p.G614D 0.08 tolerated(0.68) benign(0) TCGA-06-0174-01 7 86548556 86548556 G T KIAA1324L Missense_Mutation p.N490K 0.29 deleterious(0.01) benign(0.127) TCGA-06-0174-01 7 99145995 99145995 A C FAM200A Silent p.S12S 0.31 TCGA-06-0174-01 8 116616647 116616647 C G TRPS1 Missense_Mutation p.G517R 0.21 tolerated_low_confidence(0.08) benign(0.33) TCGA-06-0174-01 8 25191663 25191663 G A DOCK5 Missense_Mutation p.V715I 0.44 deleterious(0) possibly_damaging(0.467) TCGA-06-0174-01 8 30700748 30700748 T C TEX15 Missense_Mutation p.Q1929R 0.38 deleterious(0.04) possibly_damaging(0.536) TCGA-06-0174-01 8 53025895 53025895 G A ST18 Missense_Mutation p.P1003S 0.46 deleterious(0.02) probably_damaging(1) TCGA-06-0174-01 8 68334862 68334862 G A CPA6 Silent p.F397F 0.44 TCGA-06-0174-01 8 75171694 75171694 G A JPH1 Missense_Mutation p.A395V 0.54 deleterious(0.01) probably_damaging(0.949) TCGA-06-0174-01 9 136653541 136653541 C T VAV2 Missense_Mutation p.E448K 0.46 deleterious(0.01) possibly_damaging(0.472) TCGA-06-0174-01 X 111698312 111698312 G C ZCCHC16 Missense_Mutation p.S119T 0.95 tolerated(0.09) benign(0.007) TCGA-06-0174-01 X 11316747 11316747 C T AMELX Missense_Mutation p.P89L 0.07 tolerated(0.17) unknown(0) TCGA-06-0174-01 X 125299765 125299765 C T DCAF12L2 Missense_Mutation p.R48H 0.94 tolerated(0.35) benign(0.007) TCGA-06-0174-01 X 147967460 147967460 A G AFF2 Missense_Mutation p.D435G 0.88 deleterious(0) possibly_damaging(0.652) TCGA-06-0174-01 Y 3447632 3447632 G A TGIF2LY Missense_Mutation p.R116H 0.87 deleterious(0.05) benign(0.001) TCGA-06-0184-01 10 43088980 43088980 T C ZNF33B Missense_Mutation p.E473G 0.04 deleterious(0.03) benign(0.181) TCGA-06-0184-01 10 89653809 89653809 G A PTEN Missense_Mutation p.G36E 0.41 deleterious(0) probably_damaging(0.94) TCGA-06-0184-01 10 95347103 95347103 A C FFAR4 Missense_Mutation p.I291L 0.05 deleterious(0.04) benign(0.075) TCGA-06-0184-01 11 1101144 1101144 G A MUC2 Missense_Mutation p.D2515N 0.42 unknown(0) TCGA-06-0184-01 11 133714446 133714446 G A SPATA19 Silent p.S75S 0.04 TCGA-06-0184-01 11 47345856 47345856 G A MADD Missense_Mutation p.R1528H 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-0184-01 11 60150731 60150731 C T MS4A7 Silent p.N39N 0.37 TCGA-06-0184-01 11 71191823 71191823 C T NADSYN1 Missense_Mutation p.P299L 0.31 deleterious(0.01) benign(0.077) TCGA-06-0184-01 11 7949484 7949484 G A OR10A6 Silent p.A242A 0.51 TCGA-06-0184-01 12 21422425 21422425 A G SLCO1A2 3'UTR 0.48 TCGA-06-0184-01 12 88379716 88379716 G A C12orf50 Missense_Mutation p.A346V 0.38 tolerated(0.3) benign(0.115) TCGA-06-0184-01 13 20039688 20039688 G A TPTE2 Nonsense_Mutation p.R177* 0.41 TCGA-06-0184-01 13 46544544 46544544 C T ZC3H13 Missense_Mutation p.R842H 0.30 unknown(0) TCGA-06-0184-01 13 49033823 49033823 G T RB1 Splice_Site p.X654_splice 0.33 TCGA-06-0184-01 14 64496750 64496750 G A SYNE2 Silent p.A2284A 0.26 TCGA-06-0184-01 14 75329430 75329430 G A PROX2 Intron 0.20 TCGA-06-0184-01 14 88729810 88729810 C T KCNK10 Silent p.P46P 0.22 TCGA-06-0184-01 15 74467595 74467595 C T ISLR Silent p.N132N 0.24 TCGA-06-0184-01 16 23767768 23767768 C T CHP2 Nonsense_Mutation p.Q138* 0.21 TCGA-06-0184-01 16 55855414 55855414 G A CES1 Missense_Mutation p.R187W 0.16 deleterious(0.02) probably_damaging(0.99) TCGA-06-0184-01 17 29665808 29665808 G - NF1 Frame_Shift_Del p.Q2302Hfs*17 0.32 TCGA-06-0184-01 17 42400868 42400868 C T SLC25A39 Silent p.G21G 0.76 TCGA-06-0184-01 17 73827417 73827417 C T UNC13D Silent p.L820L 0.44 TCGA-06-0184-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.36 tolerated(0.1) benign(0.438) TCGA-06-0184-01 17 76497363 76497363 G A DNAH17 Nonsense_Mutation p.R1782* 0.37 TCGA-06-0184-01 19 10799315 10799315 G A ILF3 Missense_Mutation p.G842R 0.03 tolerated_low_confidence(0.29) unknown(0) TCGA-06-0184-01 19 4555533 4555533 G C SEMA6B Missense_Mutation p.A172G 0.18 deleterious(0) probably_damaging(0.998) TCGA-06-0184-01 19 52785139 52785139 A T ZNF766 Intron 0.27 TCGA-06-0184-01 19 55434944 55434944 G A NLRP7 3'UTR 0.37 TCGA-06-0184-01 1 168065791 168065791 G A GPR161 Nonsense_Mutation p.R372* 0.30 TCGA-06-0184-01 1 186008959 186008959 T C HMCN1 Missense_Mutation p.L2043P 0.05 probably_damaging(0.999) TCGA-06-0184-01 1 205129369 205129369 G A DSTYK Missense_Mutation p.R660W 0.04 deleterious(0) possibly_damaging(0.785) TCGA-06-0184-01 1 228594284 228594284 G A TRIM11 5'UTR 0.39 TCGA-06-0184-01 1 248023987 248023987 C T TRIM58 Silent p.N163N 0.21 TCGA-06-0184-01 1 47279693 47279693 C T CYP4B1 Missense_Mutation p.R245C 0.23 deleterious(0.04) benign(0.033) TCGA-06-0184-01 1 9416221 9416221 G A SPSB1 Missense_Mutation p.V91I 0.37 tolerated(0.26) benign(0.001) TCGA-06-0184-01 20 5903619 5903619 C T CHGB Nonsense_Mutation p.R277* 0.29 TCGA-06-0184-01 20 858921 858921 T A ANGPT4 Missense_Mutation p.H368L 0.21 deleterious(0.02) probably_damaging(0.939) TCGA-06-0184-01 21 30354691 30354691 C T LTN1 Splice_Site p.X239_splice 0.26 TCGA-06-0184-01 22 24659567 24659567 C T POM121L9P RNA 0.16 TCGA-06-0184-01 22 38274115 38274115 C T EIF3L Silent p.S504S 0.27 TCGA-06-0184-01 2 105859310 105859310 G A GPR45 Missense_Mutation p.R332H 0.29 tolerated(0.11) probably_damaging(0.909) TCGA-06-0184-01 2 182360642 182360642 C T ITGA4 Silent p.G506G 0.24 TCGA-06-0184-01 2 207175047 207175047 G A ZDBF2 Missense_Mutation p.R1932H 0.26 tolerated(0.9) benign(0.05) TCGA-06-0184-01 3 127318380 127318380 G A MCM2 Missense_Mutation p.G76S 0.40 tolerated(0.11) benign(0.257) TCGA-06-0184-01 3 24231704 24231704 C T THRB Silent p.T48T 0.25 TCGA-06-0184-01 3 49691996 49691996 T C BSN Silent p.R1669R 0.31 TCGA-06-0184-01 3 49693009 49693009 G A BSN Missense_Mutation p.G2007D 0.35 unknown(0) TCGA-06-0184-01 3 56651395 56651395 G A CCDC66 Missense_Mutation p.R700K 0.20 tolerated(0.36) benign(0.045) TCGA-06-0184-01 3 62860671 62860671 C G CADPS Missense_Mutation p.D12H 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-06-0184-01 3 73673955 73673955 A G PDZRN3 Missense_Mutation p.F8L 0.24 deleterious(0.02) probably_damaging(0.959) TCGA-06-0184-01 3 74535739 74535739 G A CNTN3 Missense_Mutation p.R76C 0.26 deleterious(0) possibly_damaging(0.621) TCGA-06-0184-01 4 128999066 128999066 G C LARP1B Missense_Mutation p.G56R 0.15 deleterious(0.04) benign(0.209) TCGA-06-0184-01 4 138442740 138442740 C G PCDH18 Missense_Mutation p.G951R 0.24 deleterious(0.01) probably_damaging(1) TCGA-06-0184-01 4 69795435 69795435 A G UGT2A3 3'UTR 0.18 TCGA-06-0184-01 4 71644115 71644115 T A RUFY3 Missense_Mutation p.V285E 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-0184-01 5 138657666 138657666 G A MATR3 Missense_Mutation p.G561E 0.27 deleterious(0) probably_damaging(0.999) TCGA-06-0184-01 5 140856716 140856716 G A PCDHGC3 Missense_Mutation p.V345M 0.24 deleterious(0.04) probably_damaging(0.991) TCGA-06-0184-01 5 158140057 158140057 G A EBF1 Silent p.H430H 0.31 TCGA-06-0184-01 5 19747261 19747261 C T CDH18 Missense_Mutation p.D105N 0.22 deleterious(0.02) possibly_damaging(0.452) TCGA-06-0184-01 5 33683134 33683134 C T ADAMTS12 Missense_Mutation p.E302K 0.26 deleterious(0) probably_damaging(0.97) TCGA-06-0184-01 6 111696862 111696862 A T REV3L Missense_Mutation p.F899Y 0.42 deleterious_low_confidence(0.04) possibly_damaging(0.874) TCGA-06-0184-01 6 36993651 36993651 C T FGD2 Silent p.Y514Y 0.39 TCGA-06-0184-01 7 148457457 148457457 G A CUL1 Missense_Mutation p.A220T 0.30 tolerated(0.38) benign(0.013) TCGA-06-0184-01 7 21698496 21698496 C T DNAH11 Silent p.Y1730Y 0.24 TCGA-06-0184-01 7 80088110 80088110 T - GNAT3 Frame_Shift_Del p.E315Kfs*9 0.19 TCGA-06-0184-01 9 17135249 17135249 G A CNTLN Silent p.G62G 0.41 TCGA-06-0184-01 9 27229172 27229172 C T TEK Missense_Mutation p.T1106M 0.26 deleterious(0) probably_damaging(0.911) TCGA-06-0184-01 9 33294757 33294757 A C NFX1 Missense_Mutation p.Q122P 0.28 deleterious(0.05) benign(0.033) TCGA-06-0184-01 9 43625500 43625500 G A SPATA31A6 Missense_Mutation p.R1063W 0.23 tolerated(0.1) possibly_damaging(0.599) TCGA-06-0184-01 X 100611084 100611084 C T BTK Missense_Mutation p.A508T 0.56 deleterious(0) probably_damaging(0.977) TCGA-06-0185-01 11 111784541 111784541 C T HSPB2 Silent p.V157V 0.16 TCGA-06-0185-01 11 119059718 119059718 C T PDZD3 Missense_Mutation p.T431I 0.08 deleterious(0.01) benign(0.428) TCGA-06-0185-01 11 1267649 1267649 C T MUC5B Missense_Mutation p.T3180M 0.11 unknown(0) TCGA-06-0185-01 11 56949722 56949722 C T LRRC55 Missense_Mutation p.R119C 0.39 deleterious(0.02) probably_damaging(0.966) TCGA-06-0185-01 11 62301253 62301253 C T AHNAK Silent p.S212S 0.34 TCGA-06-0185-01 11 64800008 64800008 C T SNX15 Missense_Mutation p.R81W 0.19 deleterious(0) probably_damaging(0.913) TCGA-06-0185-01 12 121154526 121154526 C T UNC119B Missense_Mutation p.R152W 0.48 deleterious(0) probably_damaging(0.988) TCGA-06-0185-01 12 29786150 29786150 C T TMTC1 Missense_Mutation p.R353Q 0.49 deleterious(0) probably_damaging(0.999) TCGA-06-0185-01 12 333649 333649 C T SLC6A13 Missense_Mutation p.R364Q 0.44 tolerated(0.31) probably_damaging(0.969) TCGA-06-0185-01 12 57872982 57872982 G A ARHGAP9 Missense_Mutation p.P70S 0.37 tolerated(0.33) benign(0.161) TCGA-06-0185-01 12 96180812 96180812 A G NTN4 Missense_Mutation p.C164R 0.07 deleterious(0) probably_damaging(1) TCGA-06-0185-01 15 43773221 43773221 C G TP53BP1 Splice_Site p.X124_splice 0.18 TCGA-06-0185-01 16 15818586 15818586 C T MYH11 Missense_Mutation p.R1352Q 0.34 benign(0.138) TCGA-06-0185-01 16 24231309 24231309 G A PRKCB 3'UTR 0.50 TCGA-06-0185-01 16 3140535 3140535 C T ZSCAN10 Silent p.P245P 0.47 TCGA-06-0185-01 16 53337775 53337775 C T CHD9 Missense_Mutation p.P1953S 0.06 benign(0.157) TCGA-06-0185-01 16 71186577 71186577 C T HYDIN Missense_Mutation p.V276M 0.48 probably_damaging(0.994) TCGA-06-0185-01 17 7005462 7005462 G T ASGR2 Missense_Mutation p.D239E 0.08 tolerated(0.06) benign(0.017) TCGA-06-0185-01 17 72346919 72346919 G A AC103809.2 Missense_Mutation p.S131L 0.21 unknown(0) TCGA-06-0185-01 18 29056162 29056162 C T DSG3 Missense_Mutation p.T980M 0.38 tolerated(0.14) benign(0.049) TCGA-06-0185-01 18 45567452 45567452 A G ZBTB7C Silent p.I9I 0.31 TCGA-06-0185-01 19 36114000 36114000 G A HAUS5 3'UTR 0.20 TCGA-06-0185-01 19 39589268 39589268 C T PAPL Missense_Mutation p.L98F 0.34 deleterious(0) probably_damaging(0.991) TCGA-06-0185-01 19 4153714 4153714 G A CREB3L3 5'UTR 0.26 TCGA-06-0185-01 19 43766068 43766068 T C PSG9 Missense_Mutation p.E218G 0.03 tolerated(0.05) probably_damaging(0.997) TCGA-06-0185-01 19 53889600 53889600 T A ZNF525 3'Flank 0.28 TCGA-06-0185-01 19 56539799 56539799 C T NLRP5 Missense_Mutation p.R734W 0.26 deleterious(0.05) benign(0.025) TCGA-06-0185-01 1 1229200 1229201 CA - ACAP3 Splice_Site p.X787_splice 0.36 TCGA-06-0185-01 1 158622276 158622276 T - SPTA1 Frame_Shift_Del p.K1119Sfs*9 0.33 TCGA-06-0185-01 1 162749912 162749912 C T DDR2 Missense_Mutation p.P815L 0.40 tolerated(0.12) benign(0.05) TCGA-06-0185-01 1 183511445 183511445 C T SMG7 Silent p.N550N 0.05 TCGA-06-0185-01 1 185972975 185972975 A T HMCN1 Nonsense_Mutation p.K1492* 0.27 TCGA-06-0185-01 1 216373084 216373084 C T USH2A Silent p.L1232L 0.41 TCGA-06-0185-01 1 238053434 238053434 C G ZP4 Missense_Mutation p.C73S 0.06 deleterious(0) probably_damaging(0.927) TCGA-06-0185-01 1 247654759 247654759 C T OR2W5 RNA 0.07 TCGA-06-0185-01 1 60299185 60299185 G A HOOK1 Missense_Mutation p.A128T 0.43 deleterious(0) probably_damaging(0.984) TCGA-06-0185-01 1 89448530 89448530 T A RBMXL1 Missense_Mutation p.Y327F 0.45 tolerated(0.05) benign(0.254) TCGA-06-0185-01 20 36989406 36989406 C T LBP Missense_Mutation p.L213F 0.29 deleterious(0.02) probably_damaging(0.999) TCGA-06-0185-01 20 57769723 57769723 C T ZNF831 Nonsense_Mutation p.R1217* 0.31 TCGA-06-0185-01 21 10998243 10998243 C T TPTE RNA 0.04 TCGA-06-0185-01 21 44437070 44437070 C T PKNOX1 Missense_Mutation p.P192L 0.31 deleterious(0.03) benign(0.066) TCGA-06-0185-01 21 47588353 47588353 C T SPATC1L Missense_Mutation p.S138N 0.18 tolerated(0.32) benign(0.019) TCGA-06-0185-01 2 179455353 179455353 G A TTN Missense_Mutation p.R20367W 0.38 TCGA-06-0185-01 2 191862974 191862974 T A STAT1 Missense_Mutation p.K201M 0.30 deleterious(0.04) benign(0.207) TCGA-06-0185-01 2 238283533 238283533 C T COL6A3 Silent p.V1067V 0.12 TCGA-06-0185-01 2 28764631 28764631 G A PLB1 Missense_Mutation p.V278M 0.35 deleterious(0.03) probably_damaging(0.957) TCGA-06-0185-01 2 73315522 73315544 AGCACTCAGCTCCTCCTGTCCAA - RAB11FIP5 Frame_Shift_Del p.L401Pfs*3 0.47 TCGA-06-0185-01 3 134080563 134080563 C T AMOTL2 Missense_Mutation p.E456K 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-06-0185-01 3 134920443 134920443 A G EPHB1 Missense_Mutation p.N753S 0.46 deleterious(0.03) benign(0.262) TCGA-06-0185-01 3 13679197 13679197 C A FBLN2 Silent p.A1158A 0.11 TCGA-06-0185-01 3 160156161 160156161 C T TRIM59 Missense_Mutation p.E271K 0.40 tolerated(0.27) benign(0.002) TCGA-06-0185-01 3 58849423 58849423 C T C3orf67 Missense_Mutation p.R360Q 0.42 tolerated(0.15) possibly_damaging(0.889) TCGA-06-0185-01 4 123868606 123868606 C T SPATA5 Silent p.Y559Y 0.13 TCGA-06-0185-01 4 129770286 129770286 T A JADE1 Missense_Mutation p.W150R 0.49 deleterious(0) probably_damaging(0.984) TCGA-06-0185-01 4 159789510 159789510 C T FNIP2 Silent p.N574N 0.07 TCGA-06-0185-01 5 135692669 135692669 C T TRPC7 Missense_Mutation p.R136H 0.42 deleterious(0) probably_damaging(0.969) TCGA-06-0185-01 5 170883817 170883817 C T FGF18 3'UTR 0.22 TCGA-06-0185-01 5 176304269 176304269 G A UNC5A Silent p.P485P 0.30 TCGA-06-0185-01 6 149918283 149918283 A C KATNA1 Missense_Mutation p.L398W 0.06 deleterious(0) probably_damaging(0.992) TCGA-06-0185-01 6 159178400 159178400 C T SYTL3 Missense_Mutation p.P432L 0.38 tolerated(0.18) benign(0.008) TCGA-06-0185-01 6 16306892 16306892 C T ATXN1 Missense_Mutation p.V706I 0.37 tolerated(0.65) benign(0.002) TCGA-06-0185-01 6 168363130 168363130 G C MLLT4 Silent p.R1608R 0.37 TCGA-06-0185-01 6 168363191 168363191 G C MLLT4 Missense_Mutation p.E1629Q 0.34 deleterious_low_confidence(0.02) unknown(0) TCGA-06-0185-01 6 31474865 31474865 C T MICB Missense_Mutation p.A227V 0.30 deleterious(0) probably_damaging(0.993) TCGA-06-0185-01 7 140453148 140453148 C T BRAF Missense_Mutation p.G596D 0.10 deleterious(0) probably_damaging(0.988) TCGA-06-0185-01 7 144062204 144062204 C A ARHGEF5 Silent p.P814P 0.25 TCGA-06-0185-01 7 20689724 20689724 C T ABCB5 Missense_Mutation p.T429M 0.13 deleterious(0) probably_damaging(1) TCGA-06-0185-01 7 55240707 55240707 G A EGFR Missense_Mutation p.V651M 0.24 deleterious(0.01) possibly_damaging(0.863) TCGA-06-0185-01 7 55874788 55874788 T A SEPT14 Silent p.P327P 0.31 TCGA-06-0185-01 7 95499217 95499217 G A DYNC1I1 Missense_Mutation p.V150M 0.32 tolerated(0.81) benign(0.105) TCGA-06-0185-01 8 139856384 139856384 C T COL22A1 Missense_Mutation p.V226I 0.42 unknown(0) TCGA-06-0185-01 8 38873654 38873654 G A ADAM9 Silent p.R117R 0.38 TCGA-06-0185-01 8 55539225 55539225 C A RP1 Missense_Mutation p.T928N 0.08 tolerated(0.28) benign(0.068) TCGA-06-0185-01 8 85774590 85774590 G A RALYL Missense_Mutation p.R171H 0.51 tolerated(0.08) benign(0.414) TCGA-06-0185-01 9 107266629 107266629 C T OR13F1 Missense_Mutation p.A29V 0.06 tolerated(1) benign(0) TCGA-06-0185-01 9 139915253 139915253 G A ABCA2 Silent p.G386G 0.45 TCGA-06-0185-01 9 35043416 35043416 G A C9orf131 Missense_Mutation p.E264K 0.23 deleterious(0.01) possibly_damaging(0.562) TCGA-06-0185-01 9 35043985 35043985 G C C9orf131 Missense_Mutation p.W453C 0.22 tolerated(0.08) benign(0.006) TCGA-06-0185-01 9 35548294 35548294 C A RUSC2 Nonsense_Mutation p.C592* 0.47 TCGA-06-0185-01 9 37785036 37785036 G T EXOSC3 Silent p.A2A 0.42 TCGA-06-0187-01 10 89692911 89692911 G A PTEN Missense_Mutation p.G132D 0.60 deleterious(0.03) probably_damaging(0.96) TCGA-06-0187-01 11 55761685 55761685 G T OR5F1 Silent p.T139T 0.35 TCGA-06-0187-01 11 6190769 6190769 G C OR52B2 Missense_Mutation p.T263S 0.43 deleterious(0.03) probably_damaging(0.999) TCGA-06-0187-01 11 71293893 71293893 G A KRTAP5-11 5'UTR 0.35 TCGA-06-0187-01 12 115117753 115117753 C T TBX3 Missense_Mutation p.A228T 0.41 tolerated_low_confidence(0.16) benign(0.001) TCGA-06-0187-01 14 100705806 100705806 T C YY1 Silent p.H75H 0.12 TCGA-06-0187-01 14 19553889 19553889 T A POTEG Missense_Mutation p.I158N 0.11 deleterious(0) possibly_damaging(0.853) TCGA-06-0187-01 14 21250283 21250283 T C RNASE6 Missense_Mutation p.V142A 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-06-0187-01 14 62547769 62547769 C T SYT16 Missense_Mutation p.T404M 0.47 deleterious(0) probably_damaging(0.999) TCGA-06-0187-01 15 83932199 83932199 A C BNC1 Missense_Mutation p.F602V 0.37 tolerated(0.34) benign(0) TCGA-06-0187-01 16 5134748 5134748 C T ALG1 Intron 0.36 TCGA-06-0187-01 17 27028619 27028619 A G SUPT6H Silent p.P1719P 0.38 TCGA-06-0187-01 17 39296555 39296555 C T KRTAP4-6 Missense_Mutation p.R62H 0.47 tolerated(0.13) unknown(0) TCGA-06-0187-01 17 41132600 41132600 G A RUNDC1 Missense_Mutation p.A3T 0.55 deleterious_low_confidence(0) unknown(0) TCGA-06-0187-01 17 48193234 48193234 G A SAMD14 Missense_Mutation p.R208W 0.26 tolerated(0.14) probably_damaging(0.999) TCGA-06-0187-01 17 56408636 56408636 G A BZRAP1 5'Flank 0.30 TCGA-06-0187-01 17 648740 648740 A C GEMIN4 Missense_Mutation p.L848R 0.31 deleterious(0) probably_damaging(0.961) TCGA-06-0187-01 18 29340597 29340597 T A SLC25A52 Missense_Mutation p.R20W 0.40 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-06-0187-01 18 7049076 7049076 C T LAMA1 Splice_Site p.X256_splice 0.35 TCGA-06-0187-01 19 23543933 23543933 G A ZNF91 Silent p.T616T 0.31 TCGA-06-0187-01 19 4155013 4155013 G A CREB3L3 Missense_Mutation p.V49I 0.40 tolerated(0.5) benign(0.025) TCGA-06-0187-01 19 44791503 44791503 G A ZNF235 Silent p.A695A 0.43 TCGA-06-0187-01 19 4523769 4523769 G A PLIN5 Missense_Mutation p.P388L 0.44 deleterious(0) possibly_damaging(0.581) TCGA-06-0187-01 19 48525508 48525508 A G ELSPBP1 Missense_Mutation p.E199G 0.43 tolerated(0.07) benign(0.061) TCGA-06-0187-01 19 52249322 52249322 C T FPR1 Missense_Mutation p.R309Q 0.33 tolerated(0.2) benign(0.153) TCGA-06-0187-01 1 154897700 154897700 C T PMVK Missense_Mutation p.G162R 0.38 tolerated(0.56) benign(0.003) TCGA-06-0187-01 1 207510756 207510756 T C CD55 Splice_Site p.X354_splice 0.39 TCGA-06-0187-01 20 51871908 51871908 T A TSHZ2 Missense_Mutation p.S637R 0.32 tolerated(0.32) benign(0.125) TCGA-06-0187-01 22 32587193 32587193 G A RFPL2 Missense_Mutation p.R235C 0.44 tolerated(0.3) benign(0.005) TCGA-06-0187-01 2 197761854 197761854 C T PGAP1 Splice_Site p.X309_splice 0.24 TCGA-06-0187-01 2 233899162 233899162 G A NEU2 Missense_Mutation p.A180T 0.57 tolerated(0.4) possibly_damaging(0.673) TCGA-06-0187-01 2 97526469 97526469 C T SEMA4C Missense_Mutation p.R799Q 0.39 tolerated(0.08) benign(0.004) TCGA-06-0187-01 4 36231073 36231073 T G ARAP2 Missense_Mutation p.K12N 0.35 tolerated(0.2) benign(0.284) TCGA-06-0187-01 4 70361046 70361046 G A UGT2B4 Silent p.Y178Y 0.47 TCGA-06-0187-01 4 70592854 70592854 A T SULT1B1 Nonsense_Mutation p.Y281* 0.37 TCGA-06-0187-01 5 13701408 13701408 T A DNAH5 Missense_Mutation p.L4492F 0.41 possibly_damaging(0.849) TCGA-06-0187-01 5 140256757 140256757 C T PCDHA12 Missense_Mutation p.A567V 0.42 tolerated_low_confidence(0.52) benign(0.008) TCGA-06-0187-01 5 171766405 171766405 G A SH3PXD2B Silent p.H568H 0.37 TCGA-06-0187-01 6 110301328 110301328 G A GPR6 Missense_Mutation p.R338H 0.65 deleterious(0) probably_damaging(0.984) TCGA-06-0187-01 6 29141972 29141972 G A OR2J2 Missense_Mutation p.R187H 0.43 deleterious(0.01) possibly_damaging(0.541) TCGA-06-0187-01 6 51732847 51732847 A G PKHD1 Missense_Mutation p.F2516S 0.45 deleterious(0) probably_damaging(0.994) TCGA-06-0187-01 7 71142245 71142245 A T WBSCR17 Missense_Mutation p.E485V 0.19 tolerated(0.08) probably_damaging(0.966) TCGA-06-0187-01 7 86415977 86415977 G A GRM3 Missense_Mutation p.R290H 0.37 deleterious(0) possibly_damaging(0.881) TCGA-06-0187-01 8 119941088 119941088 T G TNFRSF11B Silent p.R161R 0.44 TCGA-06-0187-01 8 42037770 42037772 GTC - PLAT In_Frame_Del p.D404del 0.31 TCGA-06-0187-01 9 113704040 113704040 G A LPAR1 Missense_Mutation p.R152C 0.41 deleterious(0.02) benign(0.391) TCGA-06-0187-01 9 16419635 16419635 G T BNC2 Missense_Mutation p.N884K 0.64 deleterious(0.01) probably_damaging(0.996) TCGA-06-0187-01 9 35725588 35725588 C T TLN1 Missense_Mutation p.R35Q 0.05 deleterious(0.01) probably_damaging(0.945) TCGA-06-0187-01 X 35969944 35969944 G T CXorf22 Missense_Mutation p.D304Y 0.75 deleterious(0) probably_damaging(1) TCGA-06-0187-01 X 69774607 69774607 G A TEX11 Silent p.Y743Y 0.93 TCGA-06-0188-01 10 89720812 89720812 A - PTEN Frame_Shift_Del p.N323Mfs*21 0.45 TCGA-06-0188-01 11 5013297 5013297 C T MMP26 Silent p.H233H 0.52 TCGA-06-0188-01 11 6007615 6007615 T C OR52L1 Silent p.G182G 0.05 TCGA-06-0188-01 11 64568434 64568434 C G MAP4K2 Silent p.L200L 0.23 TCGA-06-0188-01 11 65270403 65270404 - A MALAT1 RNA 0.43 TCGA-06-0188-01 12 121176678 121176678 G A ACADS Missense_Mutation p.R330H 0.29 deleterious(0.03) probably_damaging(0.984) TCGA-06-0188-01 12 16757984 16757984 T C LMO3 Intron 0.40 TCGA-06-0188-01 12 70986066 70986066 T G PTPRB Missense_Mutation p.R592S 0.38 deleterious(0.03) possibly_damaging(0.794) TCGA-06-0188-01 13 48953730 48953730 C T RB1 Nonsense_Mutation p.R445* 0.10 TCGA-06-0188-01 14 20389501 20389501 G - OR4K5 Frame_Shift_Del p.V246* 0.18 TCGA-06-0188-01 14 22363156 22363156 C T TRAV8-4 Missense_Mutation p.T96M 0.17 deleterious(0.01) benign(0.444) TCGA-06-0188-01 15 20649664 20649664 A G HERC2P3 RNA 0.21 TCGA-06-0188-01 15 75580661 75580661 C T GOLGA6D Missense_Mutation p.R174W 0.38 tolerated(0.1) benign(0.002) TCGA-06-0188-01 16 31284722 31284722 G A ITGAM Silent p.K247K 0.37 TCGA-06-0188-01 16 31286937 31286937 G A ITGAM Missense_Mutation p.R309H 0.43 tolerated(0.26) benign(0.001) TCGA-06-0188-01 16 455001 455001 C G DECR2 Missense_Mutation p.F42L 0.35 tolerated(0.28) benign(0.119) TCGA-06-0188-01 16 88931306 88931306 G A PABPN1L Silent p.A203A 0.30 TCGA-06-0188-01 17 10315706 10315706 G A MYH8 Missense_Mutation p.A466V 0.63 deleterious(0) probably_damaging(0.911) TCGA-06-0188-01 17 3850757 3850757 G T ATP2A3 Silent p.T341T 0.42 TCGA-06-0188-01 17 48540562 48540562 A G ACSF2 Missense_Mutation p.I280V 0.35 tolerated(0.09) possibly_damaging(0.498) TCGA-06-0188-01 17 7576926 7576926 G A TP53 Missense_Mutation p.A307V 0.37 tolerated(0.06) benign(0.053) TCGA-06-0188-01 17 7576927 7576927 C T TP53 Splice_Site p.X307_splice 0.37 TCGA-06-0188-01 19 10434237 10434237 C T RAVER1 Silent p.A271A 0.41 TCGA-06-0188-01 19 35786381 35786381 A T MAG Intron 0.29 TCGA-06-0188-01 1 104162188 104162188 C T AMY2A Missense_Mutation p.R176C 0.18 deleterious(0) benign(0.095) TCGA-06-0188-01 1 160832558 160832558 C T CD244 5'Flank 0.39 TCGA-06-0188-01 1 161298183 161298183 T G SDHC Intron 0.36 TCGA-06-0188-01 1 18809465 18809465 G A KLHDC7A Missense_Mutation p.G664S 0.20 deleterious(0.02) probably_damaging(0.959) TCGA-06-0188-01 1 237608770 237608770 C T RYR2 Missense_Mutation p.R414C 0.39 probably_damaging(0.928) TCGA-06-0188-01 1 26156090 26156090 C T MTFR1L Missense_Mutation p.T181I 0.30 tolerated(0.07) benign(0.42) TCGA-06-0188-01 1 8390537 8390537 G A SLC45A1 Silent p.S328S 0.46 TCGA-06-0188-01 21 10862927 10862927 G A IGHV1OR21-1 Missense_Mutation p.G75S 0.19 tolerated(0.12) benign(0.261) TCGA-06-0188-01 21 35230998 35230998 A G ITSN1 Silent p.Q1264Q 0.07 TCGA-06-0188-01 21 43524017 43524017 C T UMODL1 Nonsense_Mutation p.R447* 0.31 TCGA-06-0188-01 21 45978434 45978434 G A KRTAP10-3 Silent p.S55S 0.08 TCGA-06-0188-01 22 21351542 21351542 C T LZTR1 Missense_Mutation p.R810W 0.61 deleterious(0) possibly_damaging(0.794) TCGA-06-0188-01 22 40077044 40077044 G A CACNA1I Missense_Mutation p.R1884H 0.07 tolerated(0.13) benign(0.001) TCGA-06-0188-01 2 108626770 108626770 C T SLC5A7 Missense_Mutation p.T399M 0.24 deleterious(0.03) possibly_damaging(0.631) TCGA-06-0188-01 2 132263978 132263978 C T AC093838.4 RNA 0.36 TCGA-06-0188-01 2 170007505 170007505 G A LRP2 Missense_Mutation p.R4165C 0.36 probably_damaging(1) TCGA-06-0188-01 2 179498764 179498764 T C TTN Silent p.K14154K 0.44 TCGA-06-0188-01 2 183584858 183584858 G A DNAJC10 Missense_Mutation p.G110D 0.30 deleterious(0.03) possibly_damaging(0.829) TCGA-06-0188-01 2 218712554 218712554 G A TNS1 Missense_Mutation p.H771Y 0.41 tolerated(0.62) benign(0.136) TCGA-06-0188-01 2 220080773 220080773 C T ABCB6 Missense_Mutation p.G367E 0.59 deleterious(0) probably_damaging(1) TCGA-06-0188-01 4 104511030 104511030 C T TACR3 Missense_Mutation p.V403M 0.38 deleterious(0.02) possibly_damaging(0.496) TCGA-06-0188-01 4 52961227 52961227 A G SPATA18 3'UTR 0.43 TCGA-06-0188-01 4 68784698 68784698 G - TMPRSS11A Frame_Shift_Del p.Y319Mfs*14 0.33 TCGA-06-0188-01 4 70079996 70079996 A G UGT2B11 Missense_Mutation p.F149L 0.45 tolerated(1) benign(0.008) TCGA-06-0188-01 4 70156481 70156481 C T UGT2B28 Missense_Mutation p.S421L 0.36 deleterious(0) probably_damaging(0.929) TCGA-06-0188-01 5 129037232 129037232 C T ADAMTS19 Missense_Mutation p.R1030C 0.24 tolerated(0.06) possibly_damaging(0.67) TCGA-06-0188-01 5 131728210 131728210 C T SLC22A5 Silent p.A451A 0.12 TCGA-06-0188-01 5 36197710 36197710 A T NADK2 Missense_Mutation p.F375I 0.43 deleterious(0) benign(0.344) TCGA-06-0188-01 6 148840740 148840740 A G SASH1 Missense_Mutation p.Y307C 0.38 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-0188-01 6 39864627 39864627 G A DAAM2 Missense_Mutation p.R794H 0.42 deleterious(0.01) benign(0.004) TCGA-06-0188-01 6 42672106 42672106 G A PRPH2 Silent p.F275F 0.17 TCGA-06-0188-01 6 62995779 62995779 C T KHDRBS2 Silent p.S25S 0.35 TCGA-06-0188-01 7 151960173 151960173 A G KMT2C Silent p.C409C 0.15 TCGA-06-0188-01 8 105026843 105026843 A G RIMS2 Missense_Mutation p.K1112E 0.08 tolerated_low_confidence(1) benign(0.004) TCGA-06-0188-01 8 105456494 105456494 C A DPYS Missense_Mutation p.A259S 0.23 tolerated(0.28) benign(0.135) TCGA-06-0188-01 8 121259908 121259908 C T COL14A1 Missense_Mutation p.R846C 0.46 deleterious(0.02) probably_damaging(1) TCGA-06-0188-01 8 133879299 133879299 G A TG Silent p.S18S 0.44 TCGA-06-0188-01 9 104357220 104357220 C T PPP3R2 5'UTR 0.36 TCGA-06-0188-01 9 117129898 117129898 C T AKNA Silent p.R551R 0.52 TCGA-06-0188-01 9 117797581 117797581 C T TNC Missense_Mutation p.E1897K 0.33 tolerated(0.16) possibly_damaging(0.73) TCGA-06-0188-01 9 125551260 125551260 G A OR5C1 Missense_Mutation p.V17I 0.31 tolerated(1) benign(0) TCGA-06-0188-01 9 17135340 17135340 T A CNTLN Missense_Mutation p.S93T 0.45 tolerated_low_confidence(0.12) probably_damaging(0.996) TCGA-06-0188-01 9 79469120 79469120 C T PRUNE2 Missense_Mutation p.R14Q 0.28 deleterious(0) probably_damaging(0.992) TCGA-06-0188-01 X 129190028 129190028 G T BCORL1 Nonsense_Mutation p.E1685* 0.77 TCGA-06-0188-01 X 150770028 150770028 G T PASD1 Translation_Start_Site p.M1? 0.89 tolerated_low_confidence(0.13) benign(0.006) TCGA-06-0188-01 X 52847274 52847274 C T XAGE5 3'UTR 0.30 TCGA-06-0189-01 11 55541191 55541191 C A OR5D13 Missense_Mutation p.T93N 0.08 deleterious(0.02) benign(0.077) TCGA-06-0189-01 12 129360490 129360490 G A GLT1D1 Missense_Mutation p.V34I 0.06 tolerated(1) benign(0) TCGA-06-0189-01 12 22069980 22069980 T C ABCC9 Missense_Mutation p.Y155C 0.12 deleterious(0.01) possibly_damaging(0.749) TCGA-06-0189-01 12 53647741 53647741 G A MFSD5 Silent p.Q481Q 0.07 TCGA-06-0189-01 12 6708940 6708940 G A CHD4 Missense_Mutation p.T494M 0.09 tolerated(0.13) probably_damaging(0.981) TCGA-06-0189-01 15 42298316 42298316 C T PLA2G4E Missense_Mutation p.V133M 0.10 deleterious(0.05) probably_damaging(0.978) TCGA-06-0189-01 15 89070986 89070986 G A DET1 Missense_Mutation p.T383M 0.07 deleterious(0.02) possibly_damaging(0.671) TCGA-06-0189-01 16 1257299 1257299 G A CACNA1H Missense_Mutation p.V978M 0.20 tolerated(0.11) probably_damaging(0.999) TCGA-06-0189-01 17 39021183 39021183 C T KRT12 Missense_Mutation p.V228I 0.11 deleterious(0.01) probably_damaging(0.956) TCGA-06-0189-01 17 40646356 40646356 G A ATP6V0A1 Silent p.P400P 0.08 TCGA-06-0189-01 17 74732284 74732284 G T SRSF2 Missense_Mutation p.P209T 0.07 tolerated(0.27) unknown(0) TCGA-06-0189-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.07 tolerated(0.11) benign(0.308) TCGA-06-0189-01 1 185815175 185815175 A T HMCN1 Missense_Mutation p.I96F 0.10 benign(0.165) TCGA-06-0189-01 20 44279260 44279260 T C WFDC11 5'UTR 0.06 TCGA-06-0189-01 20 62738130 62738130 G A NPBWR2 Missense_Mutation p.P19S 0.05 tolerated(0.37) benign(0.001) TCGA-06-0189-01 2 106761696 106761696 T C UXS1 Missense_Mutation p.E141G 0.21 deleterious(0.01) probably_damaging(0.928) TCGA-06-0189-01 2 133541813 133541813 A C NCKAP5 Missense_Mutation p.F857L 0.07 tolerated(0.5) benign(0.228) TCGA-06-0189-01 2 180634264 180634264 G A ZNF385B Silent p.P73P 0.09 TCGA-06-0189-01 3 196051173 196051173 A G TM4SF19 Missense_Mutation p.Y140H 0.07 deleterious(0.05) benign(0.144) TCGA-06-0189-01 4 70359506 70359506 G A UGT2B4 Nonsense_Mutation p.R259* 0.05 TCGA-06-0189-01 6 28483535 28483535 G C GPX6 5'UTR 0.10 TCGA-06-0189-01 6 45514682 45514682 G A RUNX2 Silent p.P402P 0.05 TCGA-06-0189-01 7 101847816 101847816 A G CUX1 Missense_Mutation p.Q1029R 0.07 deleterious(0.05) unknown(0) TCGA-06-0189-01 7 121756793 121756793 G A AASS Missense_Mutation p.T263M 0.09 deleterious(0) probably_damaging(0.999) TCGA-06-0189-01 7 126882805 126882805 C G GRM8 Missense_Mutation p.G152R 0.09 deleterious(0) probably_damaging(1) TCGA-06-0189-01 7 73249094 73249094 C T WBSCR27 Silent p.R239R 0.10 TCGA-06-0189-01 7 80088065 80088065 G T GNAT3 Silent p.T329T 0.08 TCGA-06-0189-01 8 133829196 133829196 A C PHF20L1 Missense_Mutation p.Q416P 0.06 deleterious(0.05) probably_damaging(0.928) TCGA-06-0189-01 X 19968977 19968977 T G CXorf23 Missense_Mutation p.K547Q 0.06 deleterious(0.01) possibly_damaging(0.837) TCGA-06-0190-01 10 89692792 89692792 C A PTEN Missense_Mutation p.D92E 0.28 deleterious(0) probably_damaging(0.996) TCGA-06-0190-01 11 108385420 108385420 A T EXPH5 Missense_Mutation p.Y272N 0.04 deleterious(0) probably_damaging(0.999) TCGA-06-0190-01 11 57379257 57379257 G A SERPING1 Missense_Mutation p.R366H 0.40 tolerated(0.8) benign(0.003) TCGA-06-0190-01 12 101880330 101880330 C T SPIC Silent p.Y176Y 0.24 TCGA-06-0190-01 12 6879676 6879676 T C PTMS 3'UTR 0.53 TCGA-06-0190-01 12 936497 936497 T C WNK1 Intron 0.15 TCGA-06-0190-01 14 106235786 106235786 C T IGHG3 Missense_Mutation p.A308T 0.25 tolerated(0.27) benign(0.011) TCGA-06-0190-01 14 20216091 20216091 T C OR4Q3 Missense_Mutation p.F169L 0.09 deleterious(0) benign(0.038) TCGA-06-0190-01 14 91700713 91700713 G A GPR68 Missense_Mutation p.R228W 0.42 deleterious(0) benign(0.429) TCGA-06-0190-01 15 64415724 64415724 A G SNX1 Silent p.V163V 0.30 TCGA-06-0190-01 15 90340926 90340926 C T ANPEP Silent p.A679A 0.15 TCGA-06-0190-01 15 98512581 98512581 G A ARRDC4 Missense_Mutation p.C285Y 0.05 tolerated(0.1) probably_damaging(0.985) TCGA-06-0190-01 16 30581364 30581364 G A ZNF688 Missense_Mutation p.S235F 0.19 deleterious(0) probably_damaging(0.98) TCGA-06-0190-01 16 50788289 50788289 G A CYLD Silent p.A289A 0.26 TCGA-06-0190-01 16 75140419 75140419 G - ZNRF1 Frame_Shift_Del p.E223Nfs*35 0.08 TCGA-06-0190-01 16 84203617 84203617 A T DNAAF1 Missense_Mutation p.S395C 0.27 deleterious(0.01) probably_damaging(0.936) TCGA-06-0190-01 17 10300223 10300223 G A MYH8 Missense_Mutation p.T1420M 0.10 deleterious(0.02) probably_damaging(0.964) TCGA-06-0190-01 17 29548907 29548907 T C NF1 Missense_Mutation p.W561R 0.10 deleterious(0) probably_damaging(0.986) TCGA-06-0190-01 17 29586056 29586056 C A NF1 Missense_Mutation p.Q1447K 0.35 deleterious(0) benign(0.185) TCGA-06-0190-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.13 deleterious(0) probably_damaging(1) TCGA-06-0190-01 18 47803460 47803460 C T MBD1 Silent p.K75K 0.29 TCGA-06-0190-01 18 55238743 55238743 C T FECH Missense_Mutation p.R121Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-0190-01 19 11512738 11512738 G A RGL3 Missense_Mutation p.P478L 0.19 tolerated(0.15) benign(0.067) TCGA-06-0190-01 19 14034593 14034593 C T CC2D1A Missense_Mutation p.R637C 0.20 deleterious(0) probably_damaging(0.915) TCGA-06-0190-01 19 14561243 14561243 G A PKN1 Missense_Mutation p.A248T 0.30 tolerated(0.37) benign(0.06) TCGA-06-0190-01 19 15374294 15374294 G T BRD4 Missense_Mutation p.F426L 0.06 benign(0.418) TCGA-06-0190-01 19 15763403 15763403 G A CYP4F3 Missense_Mutation p.D315N 0.22 tolerated(0.05) possibly_damaging(0.458) TCGA-06-0190-01 19 40368569 40368569 C G FCGBP Missense_Mutation p.R4260P 0.09 benign(0.162) TCGA-06-0190-01 19 42909550 42909550 C T LIPE Silent p.S843S 0.11 TCGA-06-0190-01 19 50461997 50461997 C T SIGLEC11 Silent p.E422E 0.16 TCGA-06-0190-01 19 53885037 53885037 G A ZNF525 Missense_Mutation p.R402H 0.12 tolerated(0.22) benign(0.003) TCGA-06-0190-01 19 54314437 54314437 C T NLRP12 Missense_Mutation p.R159Q 0.29 tolerated(0.12) benign(0.256) TCGA-06-0190-01 19 55385735 55385735 G A FCAR 5'Flank 0.21 TCGA-06-0190-01 19 56485114 56485114 C T NLRP8 Silent p.N877N 0.21 TCGA-06-0190-01 1 152279722 152279722 G A FLG Missense_Mutation p.S2547L 0.28 possibly_damaging(0.829) TCGA-06-0190-01 1 153660673 153660673 G A NPR1 Missense_Mutation p.R798H 0.29 deleterious(0) probably_damaging(0.953) TCGA-06-0190-01 1 153660684 153660684 C T NPR1 Missense_Mutation p.R802C 0.27 deleterious(0.01) probably_damaging(0.931) TCGA-06-0190-01 1 169519050 169519050 G A F5 Nonsense_Mutation p.Q534* 0.25 TCGA-06-0190-01 1 179991889 179991889 G A CEP350 Missense_Mutation p.A1098T 0.07 benign(0) TCGA-06-0190-01 1 2939073 2939073 G A ACTRT2 Missense_Mutation p.G275R 0.26 deleterious(0) probably_damaging(1) TCGA-06-0190-01 1 70876955 70876955 C G CTH 5'UTR 0.26 TCGA-06-0190-01 20 44590737 44590737 G A ZNF335 Missense_Mutation p.R540W 0.30 deleterious(0) probably_damaging(1) TCGA-06-0190-01 20 49620986 49620986 C T KCNG1 Missense_Mutation p.G378R 0.29 deleterious(0) probably_damaging(1) TCGA-06-0190-01 21 43411960 43411960 C T ZBTB21 Missense_Mutation p.V749I 0.25 deleterious(0.05) benign(0.295) TCGA-06-0190-01 22 37769260 37769260 C T ELFN2 Missense_Mutation p.R772H 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-0190-01 22 43570225 43570225 G A TTLL12 Missense_Mutation p.R407W 0.27 deleterious(0) probably_damaging(0.999) TCGA-06-0190-01 2 170113633 170113633 C T LRP2 Splice_Site p.X880_splice 0.36 TCGA-06-0190-01 2 172841151 172841157 TTGTCAA - HAT1 Frame_Shift_Del p.C294Ifs*10 0.16 TCGA-06-0190-01 2 179547505 179547505 G A TTN Missense_Mutation p.P11005S 0.23 TCGA-06-0190-01 2 201436763 201436763 C A SGOL2 Missense_Mutation p.T565K 0.07 deleterious(0.01) possibly_damaging(0.454) TCGA-06-0190-01 2 209030385 209030385 C T C2orf80 3'UTR 0.42 TCGA-06-0190-01 3 107497367 107497367 G T BBX Splice_Site p.X735_splice 0.22 TCGA-06-0190-01 3 1262380 1262380 T A CNTN6 Missense_Mutation p.L22H 0.28 tolerated(0.18) benign(0.155) TCGA-06-0190-01 3 183994405 183994405 C T ECE2 Intron 0.42 TCGA-06-0190-01 4 155287453 155287453 G A DCHS2 Silent p.A201A 0.31 TCGA-06-0190-01 4 25366728 25366728 G A ZCCHC4 Missense_Mutation p.G449D 0.31 tolerated(0.07) probably_damaging(0.959) TCGA-06-0190-01 4 46930680 46930680 A G GABRA4 Silent p.H409H 0.29 TCGA-06-0190-01 5 1057736 1057736 G A SLC12A7 Missense_Mutation p.A959V 0.29 tolerated(0.15) benign(0.148) TCGA-06-0190-01 5 13865969 13865969 C T DNAH5 Missense_Mutation p.G1388E 0.05 probably_damaging(0.931) TCGA-06-0190-01 5 147715209 147715209 T C SPINK9 Silent p.A11A 0.03 TCGA-06-0190-01 5 43280335 43280335 G A NIM1K Missense_Mutation p.R272Q 0.23 deleterious(0.05) possibly_damaging(0.658) TCGA-06-0190-01 6 29638551 29638551 G C MOG Intron 0.23 TCGA-06-0190-01 6 41774357 41774357 G A USP49 Missense_Mutation p.S122L 0.35 tolerated(0.68) benign(0.001) TCGA-06-0190-01 7 106508499 106508499 G A PIK3CG Missense_Mutation p.V165I 0.21 tolerated(0.23) benign(0.001) TCGA-06-0190-01 7 122261662 122261662 G A CADPS2 Missense_Mutation p.S326L 0.18 deleterious(0.04) possibly_damaging(0.716) TCGA-06-0190-01 7 144060210 144060210 G T ARHGEF5 Missense_Mutation p.V150L 0.13 tolerated(0.09) benign(0.02) TCGA-06-0190-01 7 17338828 17338828 C T AHR 5'UTR 0.26 TCGA-06-0190-01 7 20778686 20778686 C T ABCB5 Missense_Mutation p.S983L 0.12 tolerated(0.36) benign(0.03) TCGA-06-0190-01 7 40132440 40132442 CTA - CDK13 In_Frame_Del p.L1099del 0.16 TCGA-06-0190-01 7 40132451 40132451 T G CDK13 Silent p.S1101S 0.16 TCGA-06-0190-01 7 51111289 51111289 C T COBL Silent p.A399A 0.23 TCGA-06-0190-01 8 110984912 110984912 C T KCNV1 Missense_Mutation p.C189Y 0.26 tolerated(0.05) benign(0.397) TCGA-06-0190-01 8 143823793 143823793 C T SLURP1 Missense_Mutation p.R4H 0.20 tolerated(0.39) benign(0.001) TCGA-06-0190-01 8 16850701 16850701 G A FGF20 Silent p.D172D 0.08 TCGA-06-0190-01 9 135073896 135073896 C T NTNG2 Missense_Mutation p.R253C 0.17 deleterious(0) probably_damaging(0.997) TCGA-06-0190-01 X 105153812 105153812 C T NRK Missense_Mutation p.R728C 0.38 deleterious(0.02) benign(0.005) TCGA-06-0190-01 X 1407423 1407423 C T CSF2RA Silent p.N77N 0.15 TCGA-06-0190-01 X 1505534 1505534 G A SLC25A6 Silent p.F286F 0.09 TCGA-06-0192-01 10 46265058 46265058 C T FAM21C Silent p.A677A 0.16 TCGA-06-0192-01 10 89720794 89720794 T A PTEN Nonsense_Mutation p.Y315* 0.46 TCGA-06-0192-01 11 100999454 100999454 G C PGR Missense_Mutation p.D116E 0.30 deleterious_low_confidence(0) benign(0.007) TCGA-06-0192-01 11 1011072 1011072 C T AP2A2 3'UTR 0.32 TCGA-06-0192-01 11 103908056 103908056 A C DDI1 Missense_Mutation p.E169A 0.20 deleterious(0.01) benign(0.034) TCGA-06-0192-01 11 10774300 10774300 A G CTR9 Missense_Mutation p.I43V 0.06 tolerated(0.51) benign(0.002) TCGA-06-0192-01 11 124134944 124134944 G T OR8G5 Silent p.V74V 0.22 TCGA-06-0192-01 11 125830650 125830650 C T CDON 3'UTR 0.17 TCGA-06-0192-01 11 133711992 133711992 C T SPATA19 Missense_Mutation p.R149H 0.09 tolerated(1) benign(0) TCGA-06-0192-01 11 24936063 24936063 G C LUZP2 Silent p.G167G 0.40 TCGA-06-0192-01 11 46880714 46880714 G A LRP4 Silent p.D1846D 0.10 TCGA-06-0192-01 11 55761167 55761167 G A OR5F1 Missense_Mutation p.S312F 0.26 deleterious(0.01) benign(0.169) TCGA-06-0192-01 11 56468297 56468297 C A OR9G1 Missense_Mutation p.A145E 0.12 deleterious(0) possibly_damaging(0.786) TCGA-06-0192-01 11 65107936 65107936 G A DPF2 Missense_Mutation p.R38H 0.04 deleterious(0) probably_damaging(0.993) TCGA-06-0192-01 11 6637552 6637552 C T TPP1 Missense_Mutation p.A357T 0.20 deleterious(0) probably_damaging(0.998) TCGA-06-0192-01 12 10241786 10241786 C T CLEC1A Missense_Mutation p.A51T 0.35 deleterious(0.03) benign(0.045) TCGA-06-0192-01 12 21168708 21168708 G A SLCO1B7 Missense_Mutation p.E27K 0.25 deleterious(0) probably_damaging(0.993) TCGA-06-0192-01 12 22005399 22005399 T C ABCC9 Missense_Mutation p.H849R 0.35 deleterious(0) possibly_damaging(0.828) TCGA-06-0192-01 12 27521311 27521311 C T ARNTL2 Nonsense_Mutation p.R50* 0.33 TCGA-06-0192-01 12 48543629 48543629 G T ASB8 Missense_Mutation p.N129K 0.32 tolerated(0.06) probably_damaging(0.982) TCGA-06-0192-01 12 56563342 56563342 C T SMARCC2 Missense_Mutation p.A865T 0.09 deleterious(0) possibly_damaging(0.499) TCGA-06-0192-01 12 95603382 95603382 G A FGD6 Missense_Mutation p.R560W 0.26 deleterious(0) possibly_damaging(0.841) TCGA-06-0192-01 12 96688901 96688901 C G CDK17 Splice_Site p.X292_splice 0.21 TCGA-06-0192-01 13 100634942 100634942 G A ZIC2 Silent p.A208A 0.21 TCGA-06-0192-01 14 107083713 107083713 C A IGHV4-59 5'UTR 0.27 TCGA-06-0192-01 14 47530541 47530541 G A MDGA2 Missense_Mutation p.T479M 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-06-0192-01 15 22332715 22332715 T C RP11-69H14.6 RNA 0.07 TCGA-06-0192-01 15 22382513 22382513 T A OR4N4 Missense_Mutation p.L14H 0.36 deleterious(0) probably_damaging(0.954) TCGA-06-0192-01 15 26812854 26812854 A G GABRB3 Missense_Mutation p.F237L 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-0192-01 15 43038437 43038437 G A TTBK2 Silent p.V1097V 0.33 TCGA-06-0192-01 15 50838708 50838708 C T USP50 Silent p.P5P 0.14 TCGA-06-0192-01 16 56973164 56973164 G A HERPUD1 Silent p.Q149Q 0.09 TCGA-06-0192-01 16 71603782 71603782 C T TAT Missense_Mutation p.R367H 0.29 tolerated(0.17) benign(0.003) TCGA-06-0192-01 16 9858210 9858210 G A GRIN2A Missense_Mutation p.T1064M 0.24 deleterious(0.01) possibly_damaging(0.555) TCGA-06-0192-01 17 29677208 29677209 - A NF1 Frame_Shift_Ins p.T2444Nfs*4 0.33 TCGA-06-0192-01 17 31105570 31105570 G A MYO1D Missense_Mutation p.T109M 0.07 deleterious(0) probably_damaging(1) TCGA-06-0192-01 17 46804366 46804366 C T HOXB13 Missense_Mutation p.R214H 0.24 deleterious(0.03) benign(0.012) TCGA-06-0192-01 18 14851607 14851607 C T ANKRD30B Missense_Mutation p.H1103Y 0.30 tolerated(0.15) possibly_damaging(0.888) TCGA-06-0192-01 18 70526307 70526307 C T NETO1 Missense_Mutation p.A75T 0.09 tolerated(0.13) benign(0.26) TCGA-06-0192-01 19 14261968 14261968 C T LPHN1 Missense_Mutation p.R1381Q 0.29 deleterious(0) probably_damaging(0.951) TCGA-06-0192-01 19 15770048 15770048 G A CYP4F3 Silent p.A472A 0.12 TCGA-06-0192-01 19 15989728 15989728 C T CYP4F2 Silent p.T472T 0.05 TCGA-06-0192-01 19 21239692 21239692 A G ZNF430 Missense_Mutation p.N193S 0.19 tolerated(0.06) benign(0.016) TCGA-06-0192-01 19 44223553 44223553 G A IRGC Silent p.P281P 0.05 TCGA-06-0192-01 1 152749095 152749095 G A LCE1F Missense_Mutation p.R83H 0.27 tolerated_low_confidence(0.61) unknown(0) TCGA-06-0192-01 1 161198259 161198259 G A TOMM40L Missense_Mutation p.A217T 0.15 tolerated(0.08) probably_damaging(0.965) TCGA-06-0192-01 1 203316988 203316988 G A FMOD Silent p.H137H 0.08 TCGA-06-0192-01 1 210008454 210008454 A G DIEXF Silent p.K199K 0.23 TCGA-06-0192-01 1 240071276 240071276 G A CHRM3 Silent p.T175T 0.30 TCGA-06-0192-01 1 248637245 248637245 C T OR2T3 Silent p.S198S 0.06 TCGA-06-0192-01 1 29557372 29557372 T G MECR Missense_Mutation p.Q16P 0.46 tolerated_low_confidence(0.25) benign(0.001) TCGA-06-0192-01 1 42657151 42657151 G A FOXJ3 Nonsense_Mutation p.Q392* 0.28 TCGA-06-0192-01 1 79403509 79403509 G T ELTD1 Missense_Mutation p.T248K 0.27 tolerated(0.11) benign(0.148) TCGA-06-0192-01 20 18005451 18005451 G A OVOL2 Silent p.C219C 0.29 TCGA-06-0192-01 20 39801169 39801169 G A PLCG1 Missense_Mutation p.R1005Q 0.21 tolerated(0.45) possibly_damaging(0.744) TCGA-06-0192-01 21 19647560 19647560 T A TMPRSS15 Missense_Mutation p.N953I 0.23 deleterious(0) probably_damaging(0.966) TCGA-06-0192-01 21 42778692 42778692 G A MX2 Missense_Mutation p.V558M 0.10 tolerated(0.12) benign(0.013) TCGA-06-0192-01 21 45978487 45978487 C T KRTAP10-3 Missense_Mutation p.A38T 0.10 tolerated(0.25) unknown(0) TCGA-06-0192-01 22 30951019 30951019 A C GAL3ST1 Missense_Mutation p.I398S 0.30 deleterious(0) probably_damaging(0.976) TCGA-06-0192-01 2 10560060 10560060 C T HPCAL1 Silent p.G59G 0.07 TCGA-06-0192-01 2 131521170 131521170 G A AMER3 Missense_Mutation p.V509I 0.37 tolerated(1) benign(0.019) TCGA-06-0192-01 2 197183877 197183877 G A HECW2 Silent p.G579G 0.28 TCGA-06-0192-01 2 202154207 202154207 A C ALS2CR12 Missense_Mutation p.I395S 0.22 tolerated(0.44) benign(0.083) TCGA-06-0192-01 2 234869620 234869620 C A TRPM8 Silent p.L521L 0.32 TCGA-06-0192-01 3 169710634 169710634 G T SEC62 Missense_Mutation p.G328V 0.08 tolerated(0.19) unknown(0) TCGA-06-0192-01 3 193160209 193160209 C T ATP13A4 Silent p.E763E 0.11 TCGA-06-0192-01 3 37369037 37369037 T G GOLGA4 Nonsense_Mutation p.L1909* 0.14 TCGA-06-0192-01 5 140768990 140768990 C T PCDHGB4 Silent p.F513F 0.22 TCGA-06-0192-01 5 167868746 167868746 G A WWC1 Nonsense_Mutation p.W780* 0.22 TCGA-06-0192-01 5 72469988 72469988 G A TMEM174 Missense_Mutation p.R243H 0.37 tolerated_low_confidence(0.14) benign(0.011) TCGA-06-0192-01 6 132966960 132966960 G C TAAR1 Silent p.L61L 0.06 TCGA-06-0192-01 6 146350618 146350618 C T GRM1 5'UTR 0.26 TCGA-06-0192-01 6 158331016 158331016 C T SNX9 Missense_Mutation p.S303L 0.19 tolerated(0.1) benign(0.01) TCGA-06-0192-01 6 27879956 27879956 C T OR2B2 Missense_Mutation p.V48M 0.06 deleterious(0) benign(0.285) TCGA-06-0192-01 6 29455605 29455605 G C MAS1L Silent p.L25L 0.05 TCGA-06-0192-01 6 29691648 29691648 A G HLA-F Missense_Mutation p.Q93R 0.30 tolerated_low_confidence(0.13) benign(0.001) TCGA-06-0192-01 6 32139093 32139093 G A AGPAT1 Missense_Mutation p.R61C 0.31 deleterious(0.02) probably_damaging(0.943) TCGA-06-0192-01 6 36099124 36099124 G A MAPK13 Missense_Mutation p.A66T 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-06-0192-01 6 46659003 46659003 T A TDRD6 Missense_Mutation p.D1046E 0.41 deleterious(0) probably_damaging(1) TCGA-06-0192-01 7 139316027 139316027 G A HIPK2 Missense_Mutation p.R411W 0.19 deleterious(0) probably_damaging(0.997) TCGA-06-0192-01 7 142658446 142658446 C T KEL Splice_Site p.X75_splice 0.22 TCGA-06-0192-01 7 34889374 34889374 G A NPSR1 Intron 0.09 TCGA-06-0192-01 7 37780793 37780793 C T GPR141 Silent p.N266N 0.19 TCGA-06-0192-01 7 38725292 38725292 C T FAM183B Missense_Mutation p.R105H 0.25 tolerated(0.24) benign(0) TCGA-06-0192-01 7 87190658 87190658 C - ABCB1 Frame_Shift_Del p.A250Lfs*4 0.11 TCGA-06-0192-01 8 17872225 17872226 - A PCM1 Frame_Shift_Ins p.R1907Tfs*4 0.34 TCGA-06-0192-01 9 79322930 79322930 G A PRUNE2 Silent p.S1420S 0.16 TCGA-06-0192-01 X 119077554 119077554 G A NKAP Silent p.S5S 0.29 TCGA-06-0192-01 X 37663372 37663372 G A CYBB Nonsense_Mutation p.W380* 0.41 TCGA-06-0192-01 X 77913863 77913863 G A ZCCHC5 Missense_Mutation p.R19W 0.50 deleterious_low_confidence(0) benign(0.153) TCGA-06-0192-01 X 78426556 78426556 C T GPR174 Nonsense_Mutation p.R18* 0.52 TCGA-06-0195-01 10 48413762 48413762 G A GDF2 Missense_Mutation p.T369M 0.75 deleterious(0) probably_damaging(0.998) TCGA-06-0195-01 10 89692992 89692992 G A PTEN Missense_Mutation p.R159K 0.79 deleterious(0.04) probably_damaging(0.954) TCGA-06-0195-01 11 118773532 118773532 G A BCL9L Missense_Mutation p.P307L 0.80 benign(0) TCGA-06-0195-01 11 120008709 120008709 C T TRIM29 Missense_Mutation p.G11R 0.07 deleterious_low_confidence(0) possibly_damaging(0.872) TCGA-06-0195-01 11 45117447 45117447 G A PRDM11 Missense_Mutation p.E31K 0.45 tolerated_low_confidence(0.5) benign(0) TCGA-06-0195-01 11 86382907 86382907 G T ME3 Missense_Mutation p.P27H 0.25 tolerated_low_confidence(0.71) benign(0.058) TCGA-06-0195-01 12 104517017 104517017 T C NFYB Missense_Mutation p.Q139R 0.29 deleterious(0.04) possibly_damaging(0.483) TCGA-06-0195-01 12 113873227 113873227 G A SDSL Silent p.L179L 0.34 TCGA-06-0195-01 12 125292425 125292425 G A SCARB1 Silent p.P297P 0.29 TCGA-06-0195-01 12 1943505 1943505 T G LRTM2 Missense_Mutation p.M244R 0.55 tolerated(0.06) benign(0.248) TCGA-06-0195-01 12 53217720 53217720 G A KRT79 Missense_Mutation p.T366I 0.48 deleterious(0.01) probably_damaging(1) TCGA-06-0195-01 12 53421578 53421578 G A EIF4B Missense_Mutation p.R227H 0.30 tolerated(0.07) possibly_damaging(0.522) TCGA-06-0195-01 12 69646899 69646899 A C CPSF6 Missense_Mutation p.K113N 0.32 deleterious(0) unknown(0) TCGA-06-0195-01 12 7527093 7527093 G A CD163L1 Silent p.R1118R 0.55 TCGA-06-0195-01 12 96389631 96389631 C T HAL Missense_Mutation p.A20T 0.38 tolerated_low_confidence(0.85) benign(0.002) TCGA-06-0195-01 13 48947596 48947596 C T RB1 Nonsense_Mutation p.Q395* 0.64 TCGA-06-0195-01 14 20389151 20389151 C A OR4K5 Missense_Mutation p.P129H 0.41 deleterious(0) probably_damaging(1) TCGA-06-0195-01 16 31392315 31392315 C T ITGAX Missense_Mutation p.A1125V 0.50 deleterious(0.04) possibly_damaging(0.611) TCGA-06-0195-01 17 33591324 33591324 T C SLFN5 Missense_Mutation p.F421L 0.41 tolerated(0.81) possibly_damaging(0.746) TCGA-06-0195-01 17 47788746 47788746 C T FAM117A Silent p.P411P 0.31 TCGA-06-0195-01 17 56084573 56084574 - GGCA SRSF1 5'UTR 0.32 TCGA-06-0195-01 17 6941650 6941650 G A SLC16A13 Missense_Mutation p.V175M 0.36 tolerated(0.05) benign(0.307) TCGA-06-0195-01 17 7130543 7130543 G A DVL2 Missense_Mutation p.P470L 0.33 tolerated(0.22) benign(0.03) TCGA-06-0195-01 17 73049201 73049201 G A KCTD2 Splice_Site p.X180_splice 0.47 TCGA-06-0195-01 17 7577096 7577096 T G TP53 Missense_Mutation p.D281A 0.33 deleterious(0) probably_damaging(0.988) TCGA-06-0195-01 17 7577142 7577142 C T TP53 Missense_Mutation p.G266R 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-06-0195-01 18 32833337 32833337 A G ZSCAN30 3'UTR 0.50 TCGA-06-0195-01 19 13184252 13184252 G A NFIX Silent p.Q213Q 0.18 TCGA-06-0195-01 19 15758051 15758051 C T CYP4F3 Missense_Mutation p.R148C 0.25 deleterious(0) probably_damaging(1) TCGA-06-0195-01 19 17309077 17309077 C T MYO9B Missense_Mutation p.P1400S 0.25 tolerated(0.51) benign(0.002) TCGA-06-0195-01 19 22847727 22847727 A C ZNF492 Missense_Mutation p.K419T 0.15 deleterious(0.01) probably_damaging(0.984) TCGA-06-0195-01 19 22941405 22941405 G A ZNF99 Missense_Mutation p.R436C 0.26 tolerated(0.23) possibly_damaging(0.792) TCGA-06-0195-01 19 49852054 49852054 G A TEAD2 Missense_Mutation p.S218L 0.17 tolerated(0.15) benign(0.021) TCGA-06-0195-01 19 51205802 51205802 G A SHANK1 Missense_Mutation p.R557C 0.24 possibly_damaging(0.876) TCGA-06-0195-01 1 152286042 152286042 G A FLG Silent p.H440H 0.49 TCGA-06-0195-01 1 156640774 156640774 T A NES Missense_Mutation p.D1069V 0.13 deleterious(0.01) possibly_damaging(0.556) TCGA-06-0195-01 1 165877098 165877098 A T UCK2 3'UTR 0.36 TCGA-06-0195-01 1 170961421 170961421 C T MROH9 Missense_Mutation p.T382M 0.38 tolerated(0.38) benign(0.011) TCGA-06-0195-01 1 197896816 197896816 C A LHX9 Missense_Mutation p.H277N 0.37 deleterious(0.02) possibly_damaging(0.893) TCGA-06-0195-01 1 233394108 233394108 T C PCNXL2 Silent p.T500T 0.38 TCGA-06-0195-01 1 35223555 35223555 G A GJB5 Silent p.L208L 0.36 TCGA-06-0195-01 1 44684377 44684377 C T DMAP1 Nonsense_Mutation p.R224* 0.40 TCGA-06-0195-01 1 85488139 85488139 T A MCOLN3 Intron 0.57 TCGA-06-0195-01 20 30432906 30432906 G A FOXS1 Missense_Mutation p.T147M 0.44 deleterious(0.05) benign(0.004) TCGA-06-0195-01 20 39802384 39802384 G A PLCG1 Missense_Mutation p.E1163K 0.38 deleterious(0.01) possibly_damaging(0.723) TCGA-06-0195-01 20 43836216 43836216 C T SEMG1 Missense_Mutation p.T93M 0.38 tolerated(0.44) benign(0.04) TCGA-06-0195-01 21 11047500 11047500 G T BAGE2 RNA 0.03 TCGA-06-0195-01 21 46841242 46841242 C T COL18A1-AS1 RNA 0.29 TCGA-06-0195-01 2 179589211 179589211 G A TTN Missense_Mutation p.T6964M 0.41 TCGA-06-0195-01 2 179637967 179637967 C A TTN Missense_Mutation p.S2575I 0.29 TCGA-06-0195-01 2 179701794 179701794 C T CCDC141 Silent p.R1384R 0.54 TCGA-06-0195-01 2 233028324 233028324 G T DIS3L2 Missense_Mutation p.S369I 0.42 tolerated(0.06) benign(0.14) TCGA-06-0195-01 2 233897493 233897493 G A NEU2 Missense_Mutation p.A38T 0.32 deleterious(0.02) benign(0.4) TCGA-06-0195-01 2 234358633 234358633 G A DGKD Missense_Mutation p.D632N 0.21 deleterious(0.01) possibly_damaging(0.557) TCGA-06-0195-01 2 38978464 38978464 G A SRSF7 5'UTR 0.35 TCGA-06-0195-01 2 54080319 54080320 - TGCACTAAG GPR75 In_Frame_Ins p.V524_Q525insHLV 0.13 TCGA-06-0195-01 3 124839556 124839556 G A SLC12A8 Intron 0.63 TCGA-06-0195-01 3 127784027 127784027 G C SEC61A1 Intron 0.57 TCGA-06-0195-01 3 149051122 149051122 C A TM4SF18 Silent p.P16P 0.18 TCGA-06-0195-01 3 151532029 151532029 G A AADAC Missense_Mutation p.V27I 0.54 tolerated(1) benign(0) TCGA-06-0195-01 3 183822631 183822631 G A HTR3E Missense_Mutation p.R175H 0.46 tolerated(0.79) benign(0.006) TCGA-06-0195-01 3 193158372 193158372 G A ATP13A4 Silent p.L832L 0.50 TCGA-06-0195-01 3 32859692 32859692 G A TRIM71 Silent p.T40T 0.29 TCGA-06-0195-01 3 47460316 47460316 G A SCAP Missense_Mutation p.P653L 0.42 deleterious(0) possibly_damaging(0.847) TCGA-06-0195-01 3 57627463 57627463 A G DENND6A Missense_Mutation p.I350T 0.48 deleterious(0.02) possibly_damaging(0.627) TCGA-06-0195-01 4 2306576 2306576 G A ZFYVE28 Silent p.D497D 0.43 TCGA-06-0195-01 4 40440789 40440789 C T RBM47 Missense_Mutation p.R41H 0.46 deleterious(0) possibly_damaging(0.899) TCGA-06-0195-01 4 71115169 71115169 C T CSN3 Missense_Mutation p.T181M 0.40 tolerated(0.15) unknown(0) TCGA-06-0195-01 4 8230213 8230213 G A SH3TC1 Missense_Mutation p.R931Q 0.41 tolerated(0.31) benign(0.011) TCGA-06-0195-01 5 135587388 135587388 C T TRPC7 Missense_Mutation p.D510N 0.33 tolerated(0.63) benign(0.001) TCGA-06-0195-01 5 141316857 141316857 C T KIAA0141 Missense_Mutation p.S415L 0.44 deleterious(0) possibly_damaging(0.811) TCGA-06-0195-01 5 157078323 157078323 T G SOX30 Missense_Mutation p.Q255P 0.42 tolerated_low_confidence(0.56) benign(0.003) TCGA-06-0195-01 5 5232628 5232628 A G ADAMTS16 Missense_Mutation p.K617E 0.37 tolerated(0.08) benign(0.068) TCGA-06-0195-01 6 114266601 114266601 C T HDAC2 Missense_Mutation p.G339E 0.44 deleterious(0.01) benign(0.13) TCGA-06-0195-01 6 152644693 152644693 G A SYNE1 Silent p.L5279L 0.46 TCGA-06-0195-01 6 155571053 155571053 G A TIAM2 Missense_Mutation p.G1301R 0.51 deleterious(0) probably_damaging(1) TCGA-06-0195-01 6 38709656 38709656 T - DNAH8 Frame_Shift_Del p.L212Rfs*2 0.12 TCGA-06-0195-01 6 49660403 49660403 A T CRISP2 3'UTR 0.44 TCGA-06-0195-01 6 76023600 76023600 C T FILIP1 Missense_Mutation p.E650K 0.51 deleterious(0) probably_damaging(0.998) TCGA-06-0195-01 7 100187923 100187923 C T FBXO24 Missense_Mutation p.R127C 0.23 deleterious_low_confidence(0.02) possibly_damaging(0.689) TCGA-06-0195-01 7 137565128 137565128 A G CREB3L2 3'UTR 0.29 TCGA-06-0195-01 7 149508065 149508065 G C SSPO RNA 0.18 TCGA-06-0195-01 7 2740173 2740174 - A AMZ1 Frame_Shift_Ins p.L31Afs*121 0.35 TCGA-06-0195-01 7 87060779 87060779 C T ABCB4 Missense_Mutation p.G612R 0.29 deleterious(0) probably_damaging(1) TCGA-06-0195-01 7 98256538 98256538 C T NPTX2 Missense_Mutation p.T317M 0.22 deleterious(0) possibly_damaging(0.634) TCGA-06-0195-01 8 110476765 110476765 C A PKHD1L1 Missense_Mutation p.N2568K 0.71 deleterious(0) possibly_damaging(0.878) TCGA-06-0195-01 9 5185586 5185586 C T INSL6 Missense_Mutation p.R6H 0.33 tolerated(0.2) benign(0.019) TCGA-06-0195-01 9 97380089 97380089 G A FBP1 Silent p.C129C 0.36 TCGA-06-0195-01 X 120183088 120183088 C A GLUD2 Missense_Mutation p.S517Y 0.38 deleterious(0) probably_damaging(0.996) TCGA-06-0195-01 X 39931847 39931847 G A BCOR Nonsense_Mutation p.Q918* 0.80 TCGA-06-0195-01 X 50114831 50114831 C T DGKK Intron 0.81 TCGA-06-0209-01 10 102749558 102749558 A G C10orf2 Silent p.Q467Q 0.16 TCGA-06-0209-01 10 26790142 26790142 G C APBB1IP Intron 0.26 TCGA-06-0209-01 11 101347101 101347101 C T TRPC6 Missense_Mutation p.D559N 0.25 tolerated(0.12) benign(0.101) TCGA-06-0209-01 11 113677209 113677209 A G USP28 Splice_Site p.X800_splice 0.07 TCGA-06-0209-01 11 55406071 55406071 A G OR4P4 Missense_Mutation p.M80V 0.24 tolerated(0.14) benign(0.001) TCGA-06-0209-01 11 58723260 58723260 G A GLYATL1 Missense_Mutation p.M254I 0.23 deleterious(0.01) possibly_damaging(0.614) TCGA-06-0209-01 11 6024337 6024337 C T OR56A4 Silent p.Q14Q 0.20 TCGA-06-0209-01 11 65271806 65271806 A G MALAT1 RNA 0.21 TCGA-06-0209-01 12 12311913 12311913 C T LRP6 Missense_Mutation p.V881I 0.14 deleterious(0.04) possibly_damaging(0.704) TCGA-06-0209-01 12 29628100 29628100 G A OVCH1 Silent p.T498T 0.30 TCGA-06-0209-01 12 57600507 57600507 G T LRP1 Missense_Mutation p.G3948C 0.16 possibly_damaging(0.625) TCGA-06-0209-01 12 66911726 66911726 C T GRIP1 Missense_Mutation p.R178H 0.20 deleterious(0.03) possibly_damaging(0.861) TCGA-06-0209-01 14 106322270 106322270 C T IGHM Silent p.P18P 0.31 TCGA-06-0209-01 14 21458199 21458199 G C METTL17 Missense_Mutation p.R13T 0.22 deleterious_low_confidence(0) benign(0.407) TCGA-06-0209-01 14 21458453 21458453 G C METTL17 Missense_Mutation p.R47T 0.19 tolerated(0.37) benign(0.006) TCGA-06-0209-01 14 52433353 52433353 C T GNG2 Missense_Mutation p.P55L 0.24 deleterious(0.02) probably_damaging(1) TCGA-06-0209-01 14 74970199 74970199 G A LTBP2 Missense_Mutation p.R1565C 0.35 deleterious(0) probably_damaging(0.97) TCGA-06-0209-01 14 90736610 90736610 C T PSMC1 Missense_Mutation p.H368Y 0.23 deleterious(0.02) probably_damaging(0.961) TCGA-06-0209-01 14 95080911 95080911 G A SERPINA3 Missense_Mutation p.V45M 0.24 tolerated(0.08) possibly_damaging(0.714) TCGA-06-0209-01 14 99642475 99642475 G A BCL11B Missense_Mutation p.A233V 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-0209-01 15 21071274 21071274 C T POTEB2 Missense_Mutation p.G113S 0.15 deleterious(0) probably_damaging(0.994) TCGA-06-0209-01 15 50535347 50535347 C T HDC Missense_Mutation p.R412H 0.11 deleterious(0) probably_damaging(0.999) TCGA-06-0209-01 16 19547973 19547973 C T CCP110 Nonsense_Mutation p.R328* 0.32 TCGA-06-0209-01 16 24358110 24358110 C T CACNG3 Silent p.Y89Y 0.20 TCGA-06-0209-01 16 56510097 56510097 T C OGFOD1 Missense_Mutation p.S537P 0.26 deleterious(0.01) possibly_damaging(0.739) TCGA-06-0209-01 17 10428349 10428349 G A MYH2 Missense_Mutation p.R1566C 0.28 deleterious(0) probably_damaging(0.929) TCGA-06-0209-01 17 18965431 18965432 - TCT SNORD3B-1 RNA 0.12 TCGA-06-0209-01 17 48433460 48433460 G A XYLT2 Silent p.T440T 0.11 TCGA-06-0209-01 17 56060219 56060219 T C VEZF1 Missense_Mutation p.N190S 0.22 tolerated(0.12) benign(0.029) TCGA-06-0209-01 17 74276228 74276228 C T QRICH2 Missense_Mutation p.R1379H 0.25 deleterious(0) probably_damaging(1) TCGA-06-0209-01 18 29038537 29038537 G A DSG3 Missense_Mutation p.D116N 0.11 deleterious(0.01) possibly_damaging(0.6) TCGA-06-0209-01 18 56203942 56203942 C T ALPK2 Silent p.T1159T 0.20 TCGA-06-0209-01 19 22605043 22605043 C A ZNF98 5'UTR 0.19 TCGA-06-0209-01 19 39423173 39423173 C T MRPS12 Missense_Mutation p.R84W 0.18 deleterious(0) probably_damaging(0.997) TCGA-06-0209-01 19 40520966 40520969 ACTC - ZNF546 Frame_Shift_Del p.T597Nfs*172 0.17 TCGA-06-0209-01 19 43689122 43689122 G A PSG5 Missense_Mutation p.S81L 0.17 tolerated(0.06) possibly_damaging(0.816) TCGA-06-0209-01 19 44055781 44055781 C T XRCC1 Missense_Mutation p.V381M 0.19 deleterious(0) probably_damaging(1) TCGA-06-0209-01 19 55602837 55602837 G A PPP1R12C 3'UTR 0.14 TCGA-06-0209-01 19 7975352 7975352 C T MAP2K7 Silent p.S154S 0.19 TCGA-06-0209-01 19 9047027 9047027 G A MUC16 Missense_Mutation p.T11535M 0.19 benign(0.042) TCGA-06-0209-01 1 115269683 115269683 T C CSDE1 Missense_Mutation p.D508G 0.21 tolerated(0.42) benign(0.419) TCGA-06-0209-01 1 152084091 152084091 G A TCHH Silent p.S534S 0.24 TCGA-06-0209-01 1 202287327 202287327 C T LGR6 Silent p.Y632Y 0.13 TCGA-06-0209-01 1 227198617 227198617 G A CDC42BPA Intron 0.11 TCGA-06-0209-01 1 247921487 247921487 C T OR1C1 Silent p.T74T 0.27 TCGA-06-0209-01 1 43906999 43906999 C T SZT2 Missense_Mutation p.P2430S 0.31 tolerated(0.43) possibly_damaging(0.731) TCGA-06-0209-01 1 47400170 47400170 C G CYP4A11 Missense_Mutation p.K284N 0.33 deleterious(0.02) benign(0.148) TCGA-06-0209-01 1 55136211 55136211 C T MROH7 Silent p.S477S 0.40 TCGA-06-0209-01 1 6314950 6314950 G A GPR153 Missense_Mutation p.R6W 0.51 deleterious(0.02) probably_damaging(0.969) TCGA-06-0209-01 20 33169458 33169460 GAA - PIGU In_Frame_Del p.F315del 0.34 TCGA-06-0209-01 20 55968365 55968365 C G RBM38 Missense_Mutation p.P131R 0.15 deleterious(0) probably_damaging(0.993) TCGA-06-0209-01 21 30378731 30378731 C G RWDD2B 3'UTR 0.15 TCGA-06-0209-01 21 31869311 31869311 C T KRTAP19-4 Missense_Mutation p.G40S 0.14 deleterious_low_confidence(0) unknown(0) TCGA-06-0209-01 2 121747197 121747197 G A GLI2 Missense_Mutation p.G1236D 0.19 tolerated_low_confidence(0.25) benign(0.036) TCGA-06-0209-01 2 130877687 130877687 G C POTEF Missense_Mutation p.H134Q 0.20 deleterious_low_confidence(0) benign(0.324) TCGA-06-0209-01 2 155711294 155711294 T C KCNJ3 Silent p.H325H 0.23 TCGA-06-0209-01 2 158971751 158971751 G A UPP2 Missense_Mutation p.G164R 0.26 deleterious(0) probably_damaging(0.997) TCGA-06-0209-01 2 160964323 160964323 A G ITGB6 Missense_Mutation p.M712T 0.06 deleterious(0) benign(0.027) TCGA-06-0209-01 2 179431071 179431071 G A TTN Silent p.S26596S 0.20 TCGA-06-0209-01 2 21255225 21255225 C - APOB Splice_Site p.X451_splice 0.21 TCGA-06-0209-01 2 234669059 234669059 C T UGT1A8 Intron 0.13 TCGA-06-0209-01 2 98201526 98201526 C T ANKRD36B RNA 0.19 TCGA-06-0209-01 3 107938379 107938379 A T IFT57 Missense_Mutation p.Y85N 0.28 deleterious(0.05) benign(0.292) TCGA-06-0209-01 3 128292594 128292594 G A C3orf27 5'UTR 0.20 TCGA-06-0209-01 3 130354555 130354555 G A COL6A6 Missense_Mutation p.D1681N 0.18 tolerated(0.19) possibly_damaging(0.649) TCGA-06-0209-01 3 48629808 48629808 G A COL7A1 Missense_Mutation p.R357C 0.15 unknown(0) TCGA-06-0209-01 4 149073647 149073647 T C NR3C2 Missense_Mutation p.Y828C 0.24 tolerated(0.21) probably_damaging(0.97) TCGA-06-0209-01 4 175897719 175897719 G A ADAM29 Missense_Mutation p.R348H 0.22 tolerated(0.06) benign(0.157) TCGA-06-0209-01 4 79399128 79399128 G A FRAS1 Missense_Mutation p.E2671K 0.14 probably_damaging(0.967) TCGA-06-0209-01 5 106716921 106716921 A T EFNA5 3'UTR 0.08 TCGA-06-0209-01 5 132038627 132038627 C A KIF3A Nonsense_Mutation p.E506* 0.33 TCGA-06-0209-01 5 136324273 136324273 A G SPOCK1 Silent p.L256L 0.32 TCGA-06-0209-01 5 137848498 137848498 G T ETF1 Silent p.S229S 0.12 TCGA-06-0209-01 5 140176802 140176802 G A PCDHA2 Silent p.S751S 0.44 TCGA-06-0209-01 5 141041288 141041288 G A ARAP3 Missense_Mutation p.R1028C 0.26 deleterious(0) probably_damaging(0.967) TCGA-06-0209-01 5 22142655 22142655 C G CDH12 Intron 0.23 TCGA-06-0209-01 6 100841583 100841583 C T SIM1 Silent p.A450A 0.29 TCGA-06-0209-01 6 136599630 136599630 C T BCLAF1 Missense_Mutation p.R130H 0.14 tolerated_low_confidence(0.45) unknown(0) TCGA-06-0209-01 6 154412347 154412347 G A OPRM1 Missense_Mutation p.V395I 0.11 tolerated(0.22) possibly_damaging(0.555) TCGA-06-0209-01 6 28053436 28053436 T C ZNF165 Missense_Mutation p.S60P 0.28 deleterious(0.02) possibly_damaging(0.761) TCGA-06-0209-01 6 33653482 33653482 C T ITPR3 Missense_Mutation p.R1849C 0.30 deleterious(0.03) benign(0.001) TCGA-06-0209-01 6 84292053 84292053 C T SNAP91 Silent p.A679A 0.34 TCGA-06-0209-01 6 89868090 89868090 A G PM20D2 Missense_Mutation p.N320S 0.10 deleterious(0) possibly_damaging(0.812) TCGA-06-0209-01 7 100357434 100357434 G A ZAN Missense_Mutation p.S1221N 0.19 unknown(0) TCGA-06-0209-01 7 100552212 100552212 C T MUC3A Silent p.P321P 0.09 TCGA-06-0209-01 7 120655897 120655897 A G CPED1 Missense_Mutation p.E143G 0.12 tolerated(0.22) benign(0) TCGA-06-0209-01 7 139826573 139826573 A T KDM7A Missense_Mutation p.V251E 0.16 deleterious(0) probably_damaging(0.999) TCGA-06-0209-01 7 142482278 142482278 T C PRSS3P2 RNA 0.09 TCGA-06-0209-01 7 142964771 142964771 C T GSTK1 Missense_Mutation p.T217M 0.19 deleterious(0.01) probably_damaging(0.966) TCGA-06-0209-01 7 150840441 150840441 C T AGAP3 Missense_Mutation p.R763C 0.18 deleterious(0.01) possibly_damaging(0.888) TCGA-06-0209-01 7 150883901 150883901 C T ASB10 Splice_Site p.X106_splice 0.10 TCGA-06-0209-01 7 155538207 155538207 A - RBM33 Frame_Shift_Del p.R965Gfs*23 0.09 TCGA-06-0209-01 7 4011107 4011107 C A SDK1 Missense_Mutation p.S575Y 0.08 tolerated(0.82) benign(0.148) TCGA-06-0209-01 7 50468038 50468038 G A IKZF1 Missense_Mutation p.G383R 0.14 deleterious(0.04) probably_damaging(0.988) TCGA-06-0209-01 7 54636702 54636702 G C VSTM2A Missense_Mutation p.G212A 0.97 tolerated(0.21) benign(0.002) TCGA-06-0209-01 7 93106887 93106887 G A CALCR Missense_Mutation p.P118L 0.27 tolerated(0.22) probably_damaging(1) TCGA-06-0209-01 8 53571454 53571454 G A RB1CC1 Missense_Mutation p.S591L 0.21 tolerated(0.1) benign(0.098) TCGA-06-0209-01 9 117085438 117085438 G C ORM1 Missense_Mutation p.V9L 0.08 tolerated(0.12) unknown(0) TCGA-06-0209-01 X 105152945 105152945 C T NRK Nonsense_Mutation p.R439* 0.51 TCGA-06-0209-01 X 123504148 123504149 - A SH2D1A Frame_Shift_Ins p.R109Kfs*14 0.17 TCGA-06-0209-01 X 73963609 73963609 G A KIAA2022 Silent p.F261F 0.60 TCGA-06-0210-01 11 47196824 47196824 G C ARFGAP2 Missense_Mutation p.A102G 0.19 deleterious(0.01) benign(0.361) TCGA-06-0210-01 11 4824947 4824947 C T OR52R1 Missense_Mutation p.V222M 0.21 tolerated(0.12) benign(0.14) TCGA-06-0210-01 11 56467865 56467865 T A OR9G1 Translation_Start_Site p.M1? 0.09 deleterious(0) probably_damaging(0.963) TCGA-06-0210-01 11 60233626 60233626 T A MS4A1 Missense_Mutation p.F190Y 0.24 tolerated(0.14) possibly_damaging(0.677) TCGA-06-0210-01 11 64822202 64822202 G A NAALADL1 Silent p.N204N 0.05 TCGA-06-0210-01 11 65268409 65268409 T G MALAT1 RNA 0.23 TCGA-06-0210-01 12 123214503 123214503 G A HCAR1 Silent p.S128S 0.22 TCGA-06-0210-01 12 39124093 39124093 C T CPNE8 Missense_Mutation p.V264I 0.21 tolerated(0.25) benign(0.016) TCGA-06-0210-01 12 68642513 68642513 G A IL22 3'UTR 0.16 TCGA-06-0210-01 13 25442748 25442748 C T RNF17 Missense_Mutation p.S1391L 0.20 tolerated(1) benign(0) TCGA-06-0210-01 14 104643009 104643009 G A KIF26A Missense_Mutation p.R1295H 0.12 tolerated(0.23) benign(0.002) TCGA-06-0210-01 14 95090098 95090098 G A SERPINA3 Missense_Mutation p.D407N 0.15 tolerated(0.66) benign(0.005) TCGA-06-0210-01 15 72645470 72645470 C T HEXA Missense_Mutation p.R170Q 0.17 deleterious(0) probably_damaging(1) TCGA-06-0210-01 15 74627505 74627505 G A CCDC33 Intron 0.24 TCGA-06-0210-01 16 68856093 68856093 C T CDH1 Missense_Mutation p.A634V 0.17 tolerated(0.2) benign(0.011) TCGA-06-0210-01 17 29497003 29497003 C T NF1 Nonsense_Mutation p.R192* 0.16 TCGA-06-0210-01 17 29552164 29552164 G - NF1 Frame_Shift_Del p.D633Ifs*55 0.15 TCGA-06-0210-01 17 74005931 74005931 G A EVPL Missense_Mutation p.R1119C 0.18 deleterious(0) possibly_damaging(0.858) TCGA-06-0210-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.16 deleterious(0) probably_damaging(1) TCGA-06-0210-01 18 29101206 29101206 C T DSG2 Missense_Mutation p.H175Y 0.20 tolerated(0.07) benign(0.011) TCGA-06-0210-01 18 32886618 32886618 T G ZNF271 RNA 0.23 TCGA-06-0210-01 19 2110727 2110727 C T AP3D1 Missense_Mutation p.V1052M 0.20 tolerated(0.05) benign(0.244) TCGA-06-0210-01 19 38964245 38964245 G A RYR1 Missense_Mutation p.E1332K 0.33 benign(0.215) TCGA-06-0210-01 19 39076773 39076773 A G RYR1 Missense_Mutation p.T4971A 0.16 unknown(0) TCGA-06-0210-01 19 41630676 41630676 G A CYP2F1 Silent p.A339A 0.14 TCGA-06-0210-01 19 49900952 49900952 G T CCDC155 Missense_Mutation p.G149C 0.19 deleterious(0) probably_damaging(0.987) TCGA-06-0210-01 19 54667515 54667515 C A TMC4 Missense_Mutation p.K412N 0.20 tolerated(0.21) benign(0.004) TCGA-06-0210-01 19 8807914 8807914 C T ACTL9 Missense_Mutation p.V380I 0.26 deleterious(0) probably_damaging(0.995) TCGA-06-0210-01 1 110709512 110709512 G A SLC6A17 5'UTR 0.24 TCGA-06-0210-01 1 145273265 145273265 G A NOTCH2NL Missense_Mutation p.C40Y 0.05 deleterious(0) probably_damaging(0.998) TCGA-06-0210-01 1 158618368 158618368 C G SPTA1 Silent p.L1215L 0.15 TCGA-06-0210-01 1 158627401 158627401 G A SPTA1 Nonsense_Mutation p.R891* 0.20 TCGA-06-0210-01 1 169512354 169512354 T G F5 Splice_Site p.X659_splice 0.20 TCGA-06-0210-01 1 175048687 175048687 G A TNN Missense_Mutation p.G210S 0.33 deleterious(0) probably_damaging(0.959) TCGA-06-0210-01 1 200784743 200784743 C G CAMSAP2 Missense_Mutation p.H206D 0.27 tolerated(0.2) benign(0.098) TCGA-06-0210-01 1 207930949 207930949 C T CD46 Silent p.Y117Y 0.18 TCGA-06-0210-01 1 32741519 32741519 G A LCK Silent p.S162S 0.26 TCGA-06-0210-01 1 52880488 52880488 C G PRPF38A Missense_Mutation p.S268R 0.18 tolerated(0.38) unknown(0) TCGA-06-0210-01 1 6189059 6189059 G A CHD5 Missense_Mutation p.S1153L 0.25 deleterious(0) probably_damaging(0.972) TCGA-06-0210-01 1 65852503 65852503 G A DNAJC6 Missense_Mutation p.R335H 0.21 deleterious(0.01) probably_damaging(0.998) TCGA-06-0210-01 20 17489628 17489628 G A BFSP1 Missense_Mutation p.T214M 0.29 tolerated(0.12) benign(0.273) TCGA-06-0210-01 20 47863784 47863784 G C ZNFX1 3'UTR 0.22 TCGA-06-0210-01 2 113942578 113942578 C T PSD4 Silent p.D367D 0.19 TCGA-06-0210-01 2 27481034 27481034 C T SLC30A3 Missense_Mutation p.R140H 0.18 deleterious(0) probably_damaging(1) TCGA-06-0210-01 2 79971613 79971613 C G CTNNA2 Missense_Mutation p.T68S 0.22 deleterious(0.01) possibly_damaging(0.482) TCGA-06-0210-01 2 90139452 90139452 A T IGKV1D-16 Missense_Mutation p.S75C 0.19 deleterious(0) possibly_damaging(0.679) TCGA-06-0210-01 3 120976020 120976020 C T STXBP5L Nonsense_Mutation p.R558* 0.12 TCGA-06-0210-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.19 deleterious(0.02) probably_damaging(0.959) TCGA-06-0210-01 3 50211752 50211752 G T SEMA3F Missense_Mutation p.C142F 0.18 deleterious(0) probably_damaging(1) TCGA-06-0210-01 3 52551965 52551965 C T STAB1 Silent p.C1569C 0.18 TCGA-06-0210-01 4 123542199 123542199 G A IL21 5'UTR 0.30 TCGA-06-0210-01 4 8605853 8605853 G A CPZ Missense_Mutation p.S216N 0.29 deleterious(0) probably_damaging(0.986) TCGA-06-0210-01 5 140750263 140750263 C T PCDHGB3 Missense_Mutation p.T101M 0.22 tolerated(0.11) benign(0.115) TCGA-06-0210-01 5 23527680 23527680 G T PRDM9 Missense_Mutation p.G828V 0.13 deleterious(0.01) probably_damaging(0.998) TCGA-06-0210-01 5 73090229 73090229 A G ARHGEF28 Missense_Mutation p.I305V 0.25 tolerated(0.71) benign(0.001) TCGA-06-0210-01 6 17804730 17804730 G T KIF13A Silent p.L772L 0.33 TCGA-06-0210-01 6 55198595 55198595 C A GFRAL Missense_Mutation p.P57T 0.04 tolerated(0.52) benign(0.001) TCGA-06-0210-01 6 55198620 55198620 A G GFRAL Missense_Mutation p.Y65C 0.17 tolerated(0.17) possibly_damaging(0.497) TCGA-06-0210-01 6 84234372 84234372 C T PRSS35 Silent p.H404H 0.30 TCGA-06-0210-01 6 9900660 9900660 C T OFCC1 Intron 0.20 TCGA-06-0210-01 7 100549862 100549862 C T MUC3A Missense_Mutation p.T148M 0.13 tolerated(0.16) unknown(0) TCGA-06-0210-01 7 102106694 102106694 C T LRWD1 Silent p.L137L 0.15 TCGA-06-0210-01 7 11485827 11485827 T A THSD7A Silent p.P975P 0.18 TCGA-06-0210-01 7 150069796 150069796 G T REPIN1 Missense_Mutation p.C546F 0.20 deleterious(0) probably_damaging(1) TCGA-06-0210-01 7 41729399 41729399 C T INHBA Missense_Mutation p.R377H 0.11 deleterious(0) probably_damaging(0.994) TCGA-06-0210-01 7 44186119 44186119 G C GCK Missense_Mutation p.S322C 0.17 tolerated(0.07) benign(0.005) TCGA-06-0210-01 7 45719321 45719321 C G ADCY1 Missense_Mutation p.L638V 0.14 tolerated(0.08) benign(0.2) TCGA-06-0210-01 7 71175875 71175875 G A WBSCR17 Missense_Mutation p.V544I 0.16 tolerated(0.1) benign(0.085) TCGA-06-0210-01 7 72754748 72754748 G C FKBP6 Missense_Mutation p.D233H 0.22 deleterious(0.04) benign(0.013) TCGA-06-0210-01 7 92886757 92886757 A G CCDC132 Missense_Mutation p.I135V 0.18 tolerated(0.42) benign(0.336) TCGA-06-0210-01 8 8998667 8998667 C T PPP1R3B Silent p.T165T 0.19 TCGA-06-0210-01 9 114304228 114304228 C G ZNF483 Missense_Mutation p.P338R 0.27 tolerated(0.06) possibly_damaging(0.804) TCGA-06-0210-01 X 152807349 152807349 C T ATP2B3 Missense_Mutation p.A210V 0.21 deleterious(0.04) benign(0.005) TCGA-06-0210-01 X 17157019 17157019 C T REPS2 Missense_Mutation p.R617C 0.17 deleterious(0) probably_damaging(1) TCGA-06-0210-01 X 41782236 41782236 G A CASK Silent p.A2A 0.29 TCGA-06-0210-01 X 54497806 54497806 G T FGD1 Missense_Mutation p.T141N 0.20 tolerated_low_confidence(0.06) benign(0.054) TCGA-06-0211-01 10 16528558 16528558 C T PTER Nonsense_Mutation p.R214* 0.06 TCGA-06-0211-01 11 102709963 102709963 C T MMP3 Missense_Mutation p.R316H 0.27 deleterious(0.03) possibly_damaging(0.859) TCGA-06-0211-01 11 120008271 120008271 C T TRIM29 Missense_Mutation p.D157N 0.43 tolerated(0.37) benign(0.007) TCGA-06-0211-01 11 57106069 57106069 G A P2RX3 Silent p.S15S 0.39 TCGA-06-0211-01 11 94040372 94040372 G A FOLR4 Silent p.P123P 0.38 TCGA-06-0211-01 12 104390580 104390580 G A GLT8D2 Missense_Mutation p.A178V 0.39 tolerated(0.29) possibly_damaging(0.483) TCGA-06-0211-01 12 107126727 107126727 G A RFX4 Silent p.L508L 0.41 TCGA-06-0211-01 12 132322758 132322758 G A MMP17 Missense_Mutation p.G60S 0.39 deleterious(0) probably_damaging(1) TCGA-06-0211-01 12 274924 274924 C A IQSEC3 Missense_Mutation p.P947T 0.40 deleterious(0) probably_damaging(0.981) TCGA-06-0211-01 12 52501351 52501351 C G AC078864.1 3'Flank 0.70 TCGA-06-0211-01 12 58158830 58158830 G A CYP27B1 Missense_Mutation p.R252C 0.40 deleterious(0) probably_damaging(0.947) TCGA-06-0211-01 13 101315357 101315357 G A TMTC4 Missense_Mutation p.S138F 0.34 deleterious(0) possibly_damaging(0.89) TCGA-06-0211-01 13 50623171 50623171 T C MIR16-1 RNA 0.44 TCGA-06-0211-01 14 101349286 101349286 C T RTL1 Missense_Mutation p.A614T 0.46 tolerated(0.05) benign(0.046) TCGA-06-0211-01 14 62547795 62547795 G A SYT16 Missense_Mutation p.V413I 0.42 tolerated(0.35) benign(0.013) TCGA-06-0211-01 14 64483334 64483334 G T SYNE2 Silent p.V1624V 0.05 TCGA-06-0211-01 15 43991229 43991229 G A CKMT1A Missense_Mutation p.R399H 0.45 tolerated(0.05) benign(0.006) TCGA-06-0211-01 15 52155124 52155124 C A TMOD3 Missense_Mutation p.L15I 0.45 tolerated(1) benign(0.162) TCGA-06-0211-01 16 21847226 21847226 C T NPIPB4 Intron 0.31 TCGA-06-0211-01 16 31276779 31276779 C T ITGAM Silent p.C66C 0.19 TCGA-06-0211-01 17 12649324 12649324 T G MYOCD Missense_Mutation p.S354A 0.48 tolerated(0.18) benign(0.058) TCGA-06-0211-01 17 15967451 15967451 G A NCOR1 Missense_Mutation p.R1718W 0.41 probably_damaging(0.988) TCGA-06-0211-01 17 38859722 38859722 C - KRT24 Frame_Shift_Del p.G75Vfs*81 0.50 TCGA-06-0211-01 17 47297600 47297600 C A ABI3 Silent p.P238P 0.42 TCGA-06-0211-01 17 685869 685880 CCAGCACCTGGG - RNMTL1 In_Frame_Del p.P84_E88delinsQ 0.28 TCGA-06-0211-01 17 73258761 73258761 A T MRPS7 Silent p.P89P 0.05 TCGA-06-0211-01 18 23970001 23970001 C G TAF4B 3'UTR 0.42 TCGA-06-0211-01 18 2946066 2946066 C T LPIN2 Intron 0.03 TCGA-06-0211-01 18 42530935 42530935 C T SETBP1 Nonsense_Mutation p.R544* 0.37 TCGA-06-0211-01 19 14046600 14046600 G A PODNL1 Missense_Mutation p.A150V 0.34 tolerated(0.5) benign(0.062) TCGA-06-0211-01 19 24310730 24310730 C G ZNF254 Missense_Mutation p.S643W 0.24 deleterious(0) possibly_damaging(0.858) TCGA-06-0211-01 19 35850098 35850098 C T FFAR3 Silent p.T102T 0.14 TCGA-06-0211-01 19 51919181 51919181 T C SIGLEC10 Missense_Mutation p.Q332R 0.19 tolerated(0.3) benign(0.159) TCGA-06-0211-01 19 54759940 54759940 C T LILRB5 Silent p.S207S 0.26 TCGA-06-0211-01 19 549838 549838 C T GZMM 3'UTR 0.10 TCGA-06-0211-01 19 55325326 55325326 G T KIR2DL4 Silent p.V263V 0.29 TCGA-06-0211-01 19 56424570 56424570 G A NLRP13 Missense_Mutation p.R205C 0.24 tolerated(0.12) benign(0.018) TCGA-06-0211-01 19 8976821 8976821 G A MUC16 Missense_Mutation p.T14082I 0.27 probably_damaging(0.999) TCGA-06-0211-01 1 119923209 119923209 G A HAO2 Intron 0.38 TCGA-06-0211-01 1 150974995 150974995 C T FAM63A Silent p.E81E 0.22 TCGA-06-0211-01 1 152284473 152284473 A G FLG Silent p.S963S 0.45 TCGA-06-0211-01 1 168698174 168698174 G A DPT Missense_Mutation p.T80M 0.45 tolerated(0.14) possibly_damaging(0.775) TCGA-06-0211-01 1 207222900 207222900 C T YOD1 Missense_Mutation p.G171E 0.43 deleterious(0.02) probably_damaging(0.973) TCGA-06-0211-01 1 22142439 22142439 C T LDLRAD2 Missense_Mutation p.P172L 0.39 tolerated(0.25) benign(0.179) TCGA-06-0211-01 1 89618461 89618461 C G GBP7 Splice_Site p.X107_splice 0.07 TCGA-06-0211-01 1 93299200 93299201 AG - RPL5 Frame_Shift_Del p.D59Yfs*53 0.21 TCGA-06-0211-01 20 42168804 42168804 T A L3MBTL1 Missense_Mutation p.D707E 0.34 tolerated(0.39) benign(0.012) TCGA-06-0211-01 21 35174748 35174748 G A ITSN1 Nonsense_Mutation p.W773* 0.38 TCGA-06-0211-01 2 116573266 116573266 G A DPP10 Silent p.L641L 0.46 TCGA-06-0211-01 2 17699042 17699042 G T RAD51AP2 Missense_Mutation p.A214D 0.34 deleterious(0) probably_damaging(0.92) TCGA-06-0211-01 2 234668958 234668958 C T UGT1A8 Intron 0.40 TCGA-06-0211-01 2 79314050 79314050 T C REG1B Missense_Mutation p.E24G 0.37 tolerated(0.05) benign(0.178) TCGA-06-0211-01 2 90229309 90229309 C G IGKV1D-42 Missense_Mutation p.I43M 0.40 tolerated(0.07) possibly_damaging(0.5) TCGA-06-0211-01 3 47058654 47058654 C T SETD2 Missense_Mutation p.E2542K 0.50 deleterious(0.02) probably_damaging(0.995) TCGA-06-0211-01 4 100349278 100349278 G A ADH7 Missense_Mutation p.R125C 0.45 tolerated(0.18) benign(0.013) TCGA-06-0211-01 4 109780829 109780829 G C COL25A1 Missense_Mutation p.L435V 0.28 deleterious(0.03) benign(0.212) TCGA-06-0211-01 4 70361046 70361046 G A UGT2B4 Silent p.Y178Y 0.45 TCGA-06-0211-01 5 137502312 137502312 G A BRD8 Missense_Mutation p.P298S 0.05 tolerated(0.25) benign(0.267) TCGA-06-0211-01 5 140536602 140536602 C T PCDHB17 Silent p.N342N 0.78 TCGA-06-0211-01 5 140751057 140751057 G A PCDHGB3 Missense_Mutation p.V366I 0.46 tolerated(1) benign(0.025) TCGA-06-0211-01 5 168180912 168180912 C T SLIT3 Missense_Mutation p.V596M 0.44 deleterious(0) benign(0.107) TCGA-06-0211-01 5 178413868 178413868 C G GRM6 Missense_Mutation p.G491R 0.49 deleterious(0) probably_damaging(1) TCGA-06-0211-01 5 40852581 40852581 A G CARD6 Missense_Mutation p.M383V 0.36 deleterious(0.03) benign(0.022) TCGA-06-0211-01 5 41061746 41061746 G A MROH2B Nonsense_Mutation p.R181* 0.44 TCGA-06-0211-01 5 45267351 45267351 A T HCN1 Silent p.I541I 0.41 TCGA-06-0211-01 6 29274611 29274611 G A OR14J1 Missense_Mutation p.V49M 0.39 tolerated(0.11) benign(0.007) TCGA-06-0211-01 6 45917082 45917082 C T CLIC5 Silent p.T229T 0.43 TCGA-06-0211-01 6 70642699 70642699 T A COL19A1 Missense_Mutation p.Y231N 0.37 deleterious(0) unknown(0) TCGA-06-0211-01 6 73904675 73904675 C T KCNQ5 Silent p.D798D 0.42 TCGA-06-0211-01 7 150069659 150069659 C A REPIN1 Silent p.G500G 0.32 TCGA-06-0211-01 7 18868807 18868807 C A HDAC9 Silent p.P782P 0.26 TCGA-06-0211-01 7 38247143 38247143 C A STARD3NL Missense_Mutation p.T13N 0.27 tolerated(0.5) benign(0.001) TCGA-06-0211-01 7 55221743 55221743 A C EGFR Missense_Mutation p.T263P 0.08 tolerated(0.19) possibly_damaging(0.826) TCGA-06-0211-01 7 5967958 5967958 G C RSPH10B Silent p.V767V 0.13 TCGA-06-0211-01 7 94040216 94040216 C T COL1A2 Missense_Mutation p.R405C 0.24 probably_damaging(0.993) TCGA-06-0211-01 8 22019226 22019226 T G SFTPC 5'UTR 0.39 TCGA-06-0211-01 8 3889525 3889525 C T CSMD1 Missense_Mutation p.C171Y 0.55 probably_damaging(0.999) TCGA-06-0211-01 8 54163342 54163342 G A OPRK1 Nonsense_Mutation p.R86* 0.48 TCGA-06-0211-01 8 61769443 61769443 G A CHD7 Missense_Mutation p.S2535N 0.06 benign(0.003) TCGA-06-0211-01 9 101148021 101148021 G C GABBR2 Missense_Mutation p.N521K 0.50 deleterious(0) possibly_damaging(0.842) TCGA-06-0211-01 9 120475663 120475663 G C TLR4 Missense_Mutation p.L419F 0.37 tolerated(0.38) possibly_damaging(0.848) TCGA-06-0211-01 X 106871754 106871754 G A PRPS1 5'UTR 0.09 TCGA-06-0211-01 X 30268639 30268639 G A MAGEB1 Missense_Mutation p.R10H 0.95 tolerated(0.09) probably_damaging(0.945) TCGA-06-0211-01 X 35970005 35970005 T A CXorf22 Missense_Mutation p.I324N 0.86 deleterious(0) possibly_damaging(0.861) TCGA-06-0211-01 X 55650081 55650081 C A FOXR2 5'UTR 0.86 TCGA-06-0213-01 10 135038289 135038289 C G KNDC1 Silent p.S1715S 0.39 TCGA-06-0213-01 10 28420514 28420514 C T MPP7 Missense_Mutation p.R141H 0.26 deleterious(0) probably_damaging(0.998) TCGA-06-0213-01 10 44052995 44052995 G T ZNF239 Missense_Mutation p.P178H 0.06 deleterious(0.03) benign(0.146) TCGA-06-0213-01 10 89720852 89720852 C T PTEN Nonsense_Mutation p.R335* 0.36 TCGA-06-0213-01 11 113233171 113233171 G A TTC12 Missense_Mutation p.V555I 0.22 tolerated(0.15) benign(0.033) TCGA-06-0213-01 11 126137085 126137085 C G SRPR Missense_Mutation p.G171R 0.27 tolerated(0.43) benign(0.315) TCGA-06-0213-01 11 55594994 55594994 A G OR5L2 Silent p.Q100Q 0.30 TCGA-06-0213-01 11 58723492 58723492 C T GLYATL1 Missense_Mutation p.P332S 0.25 deleterious_low_confidence(0.01) possibly_damaging(0.776) TCGA-06-0213-01 11 65265339 65265339 A G MALAT1 RNA 0.27 TCGA-06-0213-01 11 92532317 92532317 A G FAT3 Silent p.E2046E 0.05 TCGA-06-0213-01 12 106824234 106824234 G A POLR3B Missense_Mutation p.D483N 0.27 deleterious(0) probably_damaging(0.999) TCGA-06-0213-01 12 130921520 130921520 G A RIMBP2 Missense_Mutation p.P641L 0.17 tolerated(0.05) benign(0.102) TCGA-06-0213-01 12 52642505 52642505 C A KRT7 Silent p.I457I 0.32 TCGA-06-0213-01 12 53039092 53039092 C T KRT2 Missense_Mutation p.R544Q 0.31 tolerated_low_confidence(0.3) unknown(0) TCGA-06-0213-01 12 7586265 7586265 C T CD163L1 Silent p.L50L 0.28 TCGA-06-0213-01 12 91552214 91552214 G A DCN Nonsense_Mutation p.R133* 0.30 TCGA-06-0213-01 13 49030485 49030485 G C RB1 Missense_Mutation p.V654L 0.39 tolerated(0.35) probably_damaging(0.994) TCGA-06-0213-01 14 105617967 105617967 G A JAG2 Silent p.A383A 0.40 TCGA-06-0213-01 14 93118565 93118565 G A RIN3 Missense_Mutation p.V391I 0.27 tolerated(0.66) benign(0.008) TCGA-06-0213-01 15 100345119 100345119 C T CTD-2054N24.2 5'Flank 0.33 TCGA-06-0213-01 15 81624852 81624852 G A TMC3 Missense_Mutation p.P1071S 0.22 tolerated_low_confidence(0.49) benign(0.021) TCGA-06-0213-01 16 167362 167362 C G NPRL3 Missense_Mutation p.D111H 0.20 deleterious(0.01) probably_damaging(0.927) TCGA-06-0213-01 16 32890954 32890954 C A SLC6A10P RNA 0.28 TCGA-06-0213-01 16 57416501 57416501 G A CX3CL1 Missense_Mutation p.G251R 0.13 deleterious(0.03) benign(0.226) TCGA-06-0213-01 17 62018566 62018566 C T SCN4A Silent p.G1692G 0.29 TCGA-06-0213-01 17 73745120 73745120 G A ITGB4 Missense_Mutation p.D1104N 0.21 deleterious(0.01) benign(0.005) TCGA-06-0213-01 19 41932546 41932546 C T B3GNT8 Silent p.T46T 0.26 TCGA-06-0213-01 19 53793699 53793699 G A BIRC8 5'UTR 0.25 TCGA-06-0213-01 1 147131584 147131584 C T ACP6 Missense_Mutation p.G136R 0.20 deleterious(0) probably_damaging(1) TCGA-06-0213-01 1 152275520 152275520 C A FLG Missense_Mutation p.G3948C 0.32 unknown(0) TCGA-06-0213-01 1 162368720 162368720 G A SH2D1B Missense_Mutation p.T119I 0.26 tolerated(0.36) benign(0.001) TCGA-06-0213-01 1 171621317 171621317 G T MYOC Silent p.L145L 0.17 TCGA-06-0213-01 1 205065948 205065948 G A RBBP5 Missense_Mutation p.P420S 0.28 tolerated(0.16) benign(0.214) TCGA-06-0213-01 1 36565672 36565672 C T COL8A2 Missense_Mutation p.E58K 0.24 deleterious_low_confidence(0.01) unknown(0) TCGA-06-0213-01 1 47406941 47406941 G A CYP4A11 Silent p.P55P 0.37 TCGA-06-0213-01 1 75614357 75614357 G A LHX8 Missense_Mutation p.R267H 0.34 deleterious(0) probably_damaging(0.999) TCGA-06-0213-01 1 85422200 85422200 C T MCOLN2 Missense_Mutation p.G160D 0.35 deleterious(0.02) possibly_damaging(0.675) TCGA-06-0213-01 1 86289377 86289379 TTG - COL24A1 In_Frame_Del p.Q1242del 0.39 TCGA-06-0213-01 20 1895993 1895993 A G SIRPA Missense_Mutation p.N110D 0.44 tolerated(0.26) benign(0.225) TCGA-06-0213-01 22 42195378 42195378 G T MEI1 3'UTR 0.24 TCGA-06-0213-01 2 111408233 111408233 C T BUB1 Missense_Mutation p.C698Y 0.31 tolerated(0.18) benign(0.006) TCGA-06-0213-01 2 167055444 167055444 C G SCN9A Missense_Mutation p.R1891P 0.29 deleterious(0.02) benign(0.377) TCGA-06-0213-01 2 189868848 189868848 G A COL3A1 Silent p.S934S 0.26 TCGA-06-0213-01 2 204037528 204037528 A G NBEAL1 Missense_Mutation p.K2063R 0.35 tolerated(0.06) probably_damaging(0.999) TCGA-06-0213-01 2 28761166 28761166 G A PLB1 Intron 0.30 TCGA-06-0213-01 2 3392024 3392024 C T TRAPPC12 Silent p.F210F 0.09 TCGA-06-0213-01 3 122289489 122289489 A G DTX3L Missense_Mutation p.H708R 0.25 deleterious(0) probably_damaging(1) TCGA-06-0213-01 3 14960268 14960268 G A FGD5 Missense_Mutation p.R1166H 0.37 deleterious(0) probably_damaging(0.987) TCGA-06-0213-01 3 97806681 97806681 G A OR5AC2 Missense_Mutation p.R222H 0.40 tolerated(0.43) benign(0.013) TCGA-06-0213-01 4 158242737 158242739 ACA - GRIA2 In_Frame_Del p.T292del 0.24 TCGA-06-0213-01 4 162697175 162697175 T C FSTL5 Missense_Mutation p.D154G 0.39 tolerated(0.38) benign(0.024) TCGA-06-0213-01 4 55156661 55156661 C T PDGFRA Missense_Mutation p.P1021L 0.04 deleterious(0) probably_damaging(0.999) TCGA-06-0213-01 4 76857257 76857257 T G NAAA Intron 0.09 TCGA-06-0213-01 5 129243856 129243856 C G CHSY3 Missense_Mutation p.L297V 0.27 tolerated(0.05) benign(0.23) TCGA-06-0213-01 5 168175347 168175347 G A SLIT3 Missense_Mutation p.R744C 0.33 deleterious(0.01) possibly_damaging(0.863) TCGA-06-0213-01 6 150291168 150291168 C T ULBP1 Silent p.A214A 0.17 TCGA-06-0213-01 6 163235289 163235289 G A PACRG Silent p.S89S 0.34 TCGA-06-0213-01 6 31106528 31106528 T C PSORS1C1 Missense_Mutation p.C47R 0.32 deleterious_low_confidence(0) benign(0.016) TCGA-06-0213-01 6 32974517 32974517 C T HLA-DOA 3'UTR 0.39 TCGA-06-0213-01 6 84799086 84799086 C A MRAP2 Missense_Mutation p.N168K 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-0213-01 7 103417022 103417022 G A RELN Nonsense_Mutation p.Q176* 0.22 TCGA-06-0213-01 7 117432019 117432019 G T CTTNBP2 Missense_Mutation p.Q411K 0.19 tolerated(0.4) benign(0.044) TCGA-06-0213-01 7 34698051 34698051 C A NPSR1 Missense_Mutation p.S9R 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.603) TCGA-06-0213-01 7 70597924 70597924 G A WBSCR17 Missense_Mutation p.A46T 0.20 tolerated_low_confidence(0.38) benign(0.001) TCGA-06-0213-01 7 76033702 76033702 C T SRCRB4D Missense_Mutation p.G19R 0.24 tolerated_low_confidence(0.1) benign(0.009) TCGA-06-0213-01 9 100245441 100245441 C G TDRD7 Nonsense_Mutation p.S908* 0.28 TCGA-06-0213-01 9 117552981 117552981 G A TNFSF15 Silent p.G169G 0.28 TCGA-06-0213-01 9 34648454 34648454 G A GALT Splice_Site p.X229_splice 0.09 TCGA-06-0213-01 X 100910782 100910782 T G ARMCX2 Missense_Mutation p.Y598S 0.30 tolerated(0.3) benign(0.222) TCGA-06-0213-01 X 106038858 106038858 A G RNF128 Missense_Mutation p.D401G 0.33 deleterious(0.03) benign(0.122) TCGA-06-0213-01 X 119580241 119580241 G T LAMP2 Silent p.S261S 0.28 TCGA-06-0213-01 X 122528885 122528885 G A GRIA3 Missense_Mutation p.V273I 0.30 tolerated(0.07) benign(0.033) TCGA-06-0213-01 X 122761607 122761607 G A THOC2 Silent p.S898S 0.31 TCGA-06-0213-01 X 49077514 49077514 G T CACNA1F Missense_Mutation p.P783T 0.06 tolerated(0.24) benign(0.002) TCGA-06-0213-01 X 70587386 70587386 G A TAF1 Missense_Mutation p.G73E 0.23 deleterious(0) probably_damaging(0.961) TCGA-06-0213-01 X 73062753 73062753 G A XIST RNA 0.23 TCGA-06-0213-01 X 76872167 76872167 A - ATRX Frame_Shift_Del p.L1827Cfs*9 0.24 TCGA-06-0214-01 10 20466312 20466312 C G PLXDC2 Missense_Mutation p.N345K 0.35 deleterious(0.01) possibly_damaging(0.794) TCGA-06-0214-01 11 123601649 123601649 C G ZNF202 5'UTR 0.31 TCGA-06-0214-01 11 48266683 48266683 T C OR4X2 Missense_Mutation p.S10P 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-06-0214-01 11 56950158 56950158 G A LRRC55 Splice_Site p.X264_splice 0.11 TCGA-06-0214-01 11 57003536 57003536 G A APLNR Missense_Mutation p.R315C 0.48 deleterious(0.01) probably_damaging(0.959) TCGA-06-0214-01 11 57310651 57310651 C T SMTNL1 Missense_Mutation p.T197I 0.31 tolerated_low_confidence(0.06) benign(0) TCGA-06-0214-01 11 66082764 66082764 C T CD248 Missense_Mutation p.A579T 0.35 tolerated(0.59) benign(0.007) TCGA-06-0214-01 12 109680275 109680275 C G ACACB Missense_Mutation p.P1686A 0.25 tolerated(0.16) benign(0.012) TCGA-06-0214-01 12 109724554 109724554 G A FOXN4 Intron 0.17 TCGA-06-0214-01 12 118298128 118298128 G A KSR2 Nonsense_Mutation p.R97* 0.28 TCGA-06-0214-01 12 122492863 122492863 C T BCL7A Nonsense_Mutation p.Q198* 0.32 TCGA-06-0214-01 12 15261892 15261892 A G RERG 3'UTR 0.21 TCGA-06-0214-01 12 27127064 27127064 G A TM7SF3 Missense_Mutation p.P516L 0.08 deleterious(0) probably_damaging(0.999) TCGA-06-0214-01 12 51122397 51122397 C T DIP2B Missense_Mutation p.R1193W 0.36 deleterious(0) probably_damaging(1) TCGA-06-0214-01 12 7054965 7054965 C T C12orf57 Silent p.S87S 0.28 TCGA-06-0214-01 14 104378821 104378821 G A C14orf2 3'UTR 0.21 TCGA-06-0214-01 14 73569957 73569957 C T RBM25 Missense_Mutation p.R309W 0.16 unknown(0) TCGA-06-0214-01 15 23811493 23811493 C T MKRN3 Silent p.D188D 0.32 TCGA-06-0214-01 15 25463625 25463625 G A SNORD115-27 5'Flank 0.36 TCGA-06-0214-01 15 27193227 27193227 T A GABRA5 Silent p.T412T 0.26 TCGA-06-0214-01 15 78567950 78567950 C G DNAJA4 Missense_Mutation p.Q282E 0.31 tolerated(0.14) benign(0.138) TCGA-06-0214-01 15 99901711 99901711 T A LRRC28 Missense_Mutation p.L289Q 0.35 tolerated(0.14) benign(0.044) TCGA-06-0214-01 17 1456417 1456417 C T PITPNA Silent p.V26V 0.18 TCGA-06-0214-01 17 25909866 25909866 C T KSR1 Missense_Mutation p.P102S 0.36 tolerated(0.15) benign(0.001) TCGA-06-0214-01 17 29654793 29654793 G A NF1 Missense_Mutation p.D1849N 0.28 deleterious(0) probably_damaging(0.98) TCGA-06-0214-01 17 4463847 4463847 C T GGT6 5'UTR 0.38 TCGA-06-0214-01 17 46937756 46937756 A G CALCOCO2 Silent p.S387S 0.31 TCGA-06-0214-01 17 61560492 61560492 G A ACE Missense_Mutation p.R482H 0.31 tolerated(0.15) benign(0.005) TCGA-06-0214-01 17 79207358 79207358 C T ENTHD2 Intron 0.22 TCGA-06-0214-01 17 79220094 79220094 G C SLC38A10 Silent p.L874L 0.09 TCGA-06-0214-01 18 10548993 10548993 G A NAPG Missense_Mutation p.C232Y 0.27 tolerated(0.35) benign(0.005) TCGA-06-0214-01 19 13201118 13201118 G A NFIX Silent p.S420S 0.07 TCGA-06-0214-01 19 15132653 15132653 A G CCDC105 Silent p.E391E 0.06 TCGA-06-0214-01 19 43428783 43428783 T C PSG7 3'UTR 0.43 TCGA-06-0214-01 19 45494188 45494188 C T CLPTM1 Silent p.T468T 0.28 TCGA-06-0214-01 19 45923654 45923654 T C ERCC1 Missense_Mutation p.N118S 0.36 tolerated(0.14) benign(0.013) TCGA-06-0214-01 19 50099367 50099367 C T PRR12 Missense_Mutation p.S592L 0.37 possibly_damaging(0.504) TCGA-06-0214-01 19 54968952 54968952 C A LENG8 Silent p.V586V 0.04 TCGA-06-0214-01 19 58319417 58319417 C T ZNF552 Silent p.K405K 0.28 TCGA-06-0214-01 19 9048365 9048365 G T MUC16 Missense_Mutation p.T11089N 0.07 benign(0.016) TCGA-06-0214-01 1 152192393 152192393 C T HRNR Missense_Mutation p.R571H 0.31 unknown(0) TCGA-06-0214-01 1 158639308 158639308 G A SPTA1 Missense_Mutation p.R575C 0.32 deleterious(0) probably_damaging(0.982) TCGA-06-0214-01 1 159846467 159846467 G A CCDC19 Missense_Mutation p.R411W 0.06 deleterious(0.01) possibly_damaging(0.67) TCGA-06-0214-01 1 17266398 17266398 G A CROCC Missense_Mutation p.G540R 0.05 probably_damaging(0.991) TCGA-06-0214-01 1 213178541 213178541 G A ANGEL2 Missense_Mutation p.T323M 0.07 deleterious(0) probably_damaging(0.996) TCGA-06-0214-01 1 216143995 216143995 G A USH2A Missense_Mutation p.T2310M 0.31 probably_damaging(0.969) TCGA-06-0214-01 1 224927175 224927175 G A CNIH3 3'UTR 0.23 TCGA-06-0214-01 1 235940405 235940405 G A LYST Silent p.H1806H 0.06 TCGA-06-0214-01 1 25124266 25124266 C T CLIC4 Missense_Mutation p.P36S 0.26 deleterious(0.02) probably_damaging(1) TCGA-06-0214-01 1 32843632 32843632 G A BSDC1 Silent p.D222D 0.07 TCGA-06-0214-01 1 67787302 67787302 G A IL12RB2 Missense_Mutation p.D32N 0.29 tolerated(0.15) benign(0.148) TCGA-06-0214-01 1 85624652 85624652 G A SYDE2 Silent p.I1122I 0.27 TCGA-06-0214-01 1 89481028 89481028 T C GBP3 Missense_Mutation p.K87R 0.10 tolerated(0.36) benign(0.009) TCGA-06-0214-01 20 1615912 1615912 C T SIRPG Splice_Site p.X361_splice 0.05 TCGA-06-0214-01 20 51872367 51872367 C T TSHZ2 Silent p.H790H 0.32 TCGA-06-0214-01 20 60882680 60882680 C T ADRM1 Missense_Mutation p.P218S 0.36 tolerated(0.42) unknown(0) TCGA-06-0214-01 22 31137177 31137177 G A OSBP2 Missense_Mutation p.R225H 0.13 deleterious(0) probably_damaging(1) TCGA-06-0214-01 22 41564810 41564810 C T EP300 Silent p.L1371L 0.06 TCGA-06-0214-01 2 192711627 192711627 C T SDPR Missense_Mutation p.E9K 0.07 deleterious_low_confidence(0.01) possibly_damaging(0.551) TCGA-06-0214-01 2 21249770 21249770 G A APOB Missense_Mutation p.P712S 0.35 probably_damaging(0.999) TCGA-06-0214-01 2 27664747 27664747 C T NRBP1 3'UTR 0.16 TCGA-06-0214-01 2 48026476 48026476 A G MSH6 Missense_Mutation p.M452V 0.07 deleterious(0) probably_damaging(0.976) TCGA-06-0214-01 2 74699839 74699839 G A MRPL53 5'UTR 0.13 TCGA-06-0214-01 2 74900889 74900889 G A SEMA4F Silent p.T252T 0.29 TCGA-06-0214-01 3 112738408 112738408 C T C3orf17 Silent p.Q29Q 0.11 TCGA-06-0214-01 3 112738459 112738459 C T C3orf17 Nonsense_Mutation p.W12* 0.23 TCGA-06-0214-01 3 160075296 160075296 C T IFT80 Missense_Mutation p.G207D 0.08 deleterious(0) probably_damaging(0.941) TCGA-06-0214-01 3 38175476 38175476 C T ACAA1 Missense_Mutation p.G97E 0.05 deleterious(0.02) probably_damaging(1) TCGA-06-0214-01 3 58870384 58870384 C T C3orf67 Missense_Mutation p.R76Q 0.32 tolerated(0.11) probably_damaging(0.923) TCGA-06-0214-01 4 108820833 108820833 C T SGMS2 Silent p.F186F 0.14 TCGA-06-0214-01 4 113189433 113189433 G A AP1AR Silent p.E259E 0.09 TCGA-06-0214-01 4 22414939 22414939 C T GPR125 Missense_Mutation p.V700I 0.33 tolerated(0.1) benign(0.059) TCGA-06-0214-01 4 41748308 41748308 C T PHOX2B Missense_Mutation p.R154H 0.19 deleterious(0) unknown(0) TCGA-06-0214-01 4 55131142 55131142 G A PDGFRA Missense_Mutation p.E229K 0.10 deleterious(0) probably_damaging(0.969) TCGA-06-0214-01 4 69512686 69512686 A G UGT2B15 3'UTR 0.15 TCGA-06-0214-01 4 71115206 71115206 C T CSN3 3'UTR 0.35 TCGA-06-0214-01 5 102284128 102284128 G C PAM Missense_Mutation p.V208L 0.34 deleterious(0.04) possibly_damaging(0.768) TCGA-06-0214-01 5 154396823 154396823 C A KIF4B Missense_Mutation p.T1135N 0.32 tolerated_low_confidence(0.19) benign(0.003) TCGA-06-0214-01 5 178416095 178416095 C T GRM6 Missense_Mutation p.G399S 0.19 tolerated(0.55) possibly_damaging(0.817) TCGA-06-0214-01 5 56160697 56160697 C T MAP3K1 Missense_Mutation p.P324L 0.04 deleterious(0) probably_damaging(0.999) TCGA-06-0214-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.28 TCGA-06-0214-01 6 38224188 38224188 C A BTBD9 Missense_Mutation p.C520F 0.33 deleterious(0) probably_damaging(0.99) TCGA-06-0214-01 6 7581804 7581804 T A DSP Splice_Site p.X1793_splice 0.08 TCGA-06-0214-01 7 100017491 100017491 G C ZCWPW1 Missense_Mutation p.P15R 0.05 deleterious_low_confidence(0) possibly_damaging(0.839) TCGA-06-0214-01 7 114304409 114304409 G A FOXP2 Missense_Mutation p.V666I 0.18 tolerated(0.92) benign(0.017) TCGA-06-0214-01 7 115889085 115889085 G A TES Missense_Mutation p.R42H 0.05 deleterious(0.03) probably_damaging(0.961) TCGA-06-0214-01 7 134878049 134878049 G T WDR91 Silent p.G531G 0.19 TCGA-06-0214-01 7 48312026 48312026 C T ABCA13 Silent p.Y921Y 0.08 TCGA-06-0214-01 7 70880884 70880884 A G WBSCR17 Missense_Mutation p.K200R 0.05 deleterious(0.01) possibly_damaging(0.516) TCGA-06-0214-01 7 82581587 82581587 A G PCLO Silent p.D2894D 0.22 TCGA-06-0214-01 8 27310672 27310672 G A PTK2B Missense_Mutation p.A864T 0.10 tolerated(0.17) benign(0.002) TCGA-06-0214-01 8 30705979 30705979 G A TEX15 Silent p.S185S 0.29 TCGA-06-0214-01 9 110084309 110084309 C T RAD23B Nonsense_Mutation p.Q243* 0.11 TCGA-06-0214-01 9 117396107 117396107 G A C9orf91 Silent p.R178R 0.30 TCGA-06-0214-01 9 139358176 139358176 G A SEC16A Missense_Mutation p.T1488M 0.34 tolerated(0.1) benign(0.273) TCGA-06-0214-01 9 19050150 19050150 T A RRAGA Missense_Mutation p.W165R 0.12 deleterious(0) probably_damaging(0.999) TCGA-06-0214-01 9 34690006 34690006 C T CCL19 Missense_Mutation p.R66K 0.39 tolerated(0.69) benign(0.136) TCGA-06-0214-01 9 36846902 36846902 T C PAX5 Missense_Mutation p.Y346C 0.17 deleterious(0) probably_damaging(0.992) TCGA-06-0214-01 X 72432913 72432913 G A NAP1L2 3'UTR 0.47 TCGA-06-0216-01 10 133787377 133787377 A T BNIP3 Nonsense_Mutation p.Y39* 0.56 TCGA-06-0216-01 10 51768724 51768724 G C AGAP6 Missense_Mutation p.R280T 0.17 deleterious(0.03) possibly_damaging(0.742) TCGA-06-0216-01 10 89692835 89692835 G C PTEN Missense_Mutation p.D107H 0.77 deleterious(0) possibly_damaging(0.596) TCGA-06-0216-01 11 18195500 18195500 G A MRGPRX4 Missense_Mutation p.G233S 0.46 tolerated(0.05) probably_damaging(0.918) TCGA-06-0216-01 11 40137192 40137192 C T LRRC4C Silent p.P217P 0.26 TCGA-06-0216-01 11 56950084 56950084 T A LRRC55 Missense_Mutation p.N239K 0.44 deleterious(0) probably_damaging(0.994) TCGA-06-0216-01 11 61511858 61511858 G A DAGLA Missense_Mutation p.S1009N 0.32 deleterious_low_confidence(0.01) benign(0.196) TCGA-06-0216-01 11 62593006 62593006 G C STX5 Missense_Mutation p.I143M 0.04 deleterious(0) possibly_damaging(0.897) TCGA-06-0216-01 11 71717271 71717271 C T NUMA1 Silent p.S1834S 0.42 TCGA-06-0216-01 11 94040846 94040846 G A FOLR4 Silent p.P240P 0.50 TCGA-06-0216-01 12 120142198 120142198 G A CIT Silent p.N1758N 0.40 TCGA-06-0216-01 12 125621257 125621257 C T AACS Silent p.N576N 0.39 TCGA-06-0216-01 12 132688129 132688129 C T GALNT9 Missense_Mutation p.R29H 0.46 deleterious(0) probably_damaging(0.932) TCGA-06-0216-01 12 21531397 21531397 T C IAPP 3'UTR 0.51 TCGA-06-0216-01 12 25047326 25047326 C T BCAT1 Silent p.T66T 0.52 TCGA-06-0216-01 13 47466570 47466570 T C HTR2A Missense_Mutation p.T190A 0.33 tolerated(0.54) benign(0.094) TCGA-06-0216-01 13 73355005 73355005 G A DIS3 Missense_Mutation p.T122I 0.53 deleterious(0.05) benign(0.023) TCGA-06-0216-01 14 56128109 56128109 C A KTN1 Intron 1.00 TCGA-06-0216-01 16 15692768 15692768 C T KIAA0430 Missense_Mutation p.V1643I 0.27 tolerated_low_confidence(0.09) probably_damaging(0.997) TCGA-06-0216-01 16 46694426 46694426 T G VPS35 Silent p.S783S 0.43 TCGA-06-0216-01 16 48247385 48247385 G A ABCC11 Missense_Mutation p.T442M 0.53 deleterious(0) benign(0.1) TCGA-06-0216-01 16 57993926 57993926 G A CNGB1 Silent p.A209A 0.45 TCGA-06-0216-01 17 39884047 39884047 C T HAP1 Silent p.S414S 0.46 TCGA-06-0216-01 17 4496362 4496362 G A SMTNL2 Missense_Mutation p.G209E 0.09 deleterious(0.03) probably_damaging(1) TCGA-06-0216-01 19 35832284 35832285 - T CD22 Frame_Shift_Ins p.S517Ffs*14 0.33 TCGA-06-0216-01 19 48259848 48259848 C T GLTSCR2 Nonsense_Mutation p.R454* 0.42 TCGA-06-0216-01 19 54304629 54304629 C T NLRP12 Missense_Mutation p.A870T 0.32 tolerated(0.17) benign(0.269) TCGA-06-0216-01 19 9071728 9071728 T C MUC16 Missense_Mutation p.K5240E 0.42 unknown(0) TCGA-06-0216-01 1 10511616 10511616 G T CORT Missense_Mutation p.R94S 0.45 deleterious(0) benign(0.049) TCGA-06-0216-01 1 11119958 11119981 CGGCGGGGCCGGAGGCGGCGGGGC - SRM In_Frame_Del p.G7_A14del 0.44 TCGA-06-0216-01 1 114515777 114515777 G T HIPK1 Silent p.S1092S 0.42 TCGA-06-0216-01 1 117311264 117311264 G A CD2 Silent p.Q305Q 0.45 TCGA-06-0216-01 1 152084995 152084995 C T TCHH Missense_Mutation p.R233Q 0.47 unknown(0) TCGA-06-0216-01 1 176526161 176526161 C A PAPPA2 Missense_Mutation p.P235T 0.41 tolerated_low_confidence(0.57) benign(0.039) TCGA-06-0216-01 1 240371023 240371055 CCCGGAGCAGGAATACCTCCTCCACCCCCTCTA - FMN2 In_Frame_Del p.A1094_G1104del 0.30 TCGA-06-0216-01 1 248004304 248004304 C A OR11L1 Nonsense_Mutation p.E299* 0.53 TCGA-06-0216-01 1 38082340 38082340 G A RSPO1 Silent p.A34A 0.45 TCGA-06-0216-01 1 93301897 93301898 - T RPL5 Frame_Shift_Ins p.G161Wfs*24 0.41 TCGA-06-0216-01 20 44334525 44334525 T C WFDC13 Missense_Mutation p.V88A 0.35 tolerated(0.17) benign(0.098) TCGA-06-0216-01 2 103325052 103325052 T G SLC9A2 3'UTR 0.44 TCGA-06-0216-01 2 179594120 179594120 T A TTN Missense_Mutation p.N6255Y 0.35 TCGA-06-0216-01 2 233944058 233944058 G A INPP5D Missense_Mutation p.V50I 0.51 deleterious(0) probably_damaging(0.989) TCGA-06-0216-01 2 55791468 55791468 C T SMEK2 Silent p.K747K 0.33 TCGA-06-0216-01 3 100951684 100951684 A G IMPG2 Silent p.P1058P 0.32 TCGA-06-0216-01 3 108353719 108353719 G T DZIP3 Missense_Mutation p.G273V 0.58 deleterious(0) possibly_damaging(0.829) TCGA-06-0216-01 3 130159044 130159044 T C COL6A5 Silent p.A1954A 0.66 TCGA-06-0216-01 3 138289888 138289888 T C CEP70 Missense_Mutation p.N91S 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-06-0216-01 3 172096143 172096143 A G FNDC3B Missense_Mutation p.Q1031R 0.29 deleterious(0.01) benign(0.042) TCGA-06-0216-01 3 26751911 26751911 G A LRRC3B Missense_Mutation p.D250N 0.40 tolerated(0.07) benign(0.118) TCGA-06-0216-01 3 28381958 28381958 G A AZI2 Nonsense_Mutation p.R51* 0.13 TCGA-06-0216-01 4 146077118 146077118 C T OTUD4 Silent p.V155V 0.51 TCGA-06-0216-01 4 57181748 57181748 G A KIAA1211 Missense_Mutation p.G694S 0.58 tolerated(1) probably_damaging(0.935) TCGA-06-0216-01 4 8229589 8229589 C T SH3TC1 Missense_Mutation p.P723L 0.54 tolerated(0.06) probably_damaging(1) TCGA-06-0216-01 4 9784937 9784937 C T DRD5 Silent p.D428D 0.51 TCGA-06-0216-01 5 106762936 106762936 G A EFNA5 Nonsense_Mutation p.R134* 0.45 TCGA-06-0216-01 5 179315134 179315134 C T TBC1D9B Missense_Mutation p.R408K 0.32 tolerated(0.6) benign(0.01) TCGA-06-0216-01 6 62604633 62604633 T A KHDRBS2 Silent p.A239A 0.37 TCGA-06-0216-01 7 112724285 112724288 TGAG - GPR85 Frame_Shift_Del p.F165Lfs*20 0.26 TCGA-06-0216-01 7 150325381 150325381 G A GIMAP6 Missense_Mutation p.P102L 0.19 tolerated(0.19) benign(0.113) TCGA-06-0216-01 7 150554420 150554420 C T AOC1 Missense_Mutation p.R288C 0.30 deleterious(0) probably_damaging(0.919) TCGA-06-0216-01 8 68419124 68419124 C G CPA6 Splice_Site p.X179_splice 0.40 TCGA-06-0216-01 8 95189845 95189845 G A CDH17 Silent p.D85D 0.06 TCGA-06-0216-01 9 125146014 125146014 C T PTGS1 Missense_Mutation p.T330M 0.36 deleterious(0) probably_damaging(1) TCGA-06-0216-01 9 131088069 131088069 G A COQ4 Missense_Mutation p.R104Q 0.43 deleterious(0.02) probably_damaging(1) TCGA-06-0216-01 9 37948668 37948668 C T SHB Missense_Mutation p.S437N 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-0216-01 X 110494147 110494147 G T CAPN6 Missense_Mutation p.Q386K 0.35 deleterious(0.01) possibly_damaging(0.621) TCGA-06-0216-01 X 134714081 134714081 G C DDX26B Missense_Mutation p.G793R 0.54 deleterious(0) probably_damaging(0.997) TCGA-06-0216-01 X 136113330 136113330 G A GPR101 Silent p.Y168Y 0.07 TCGA-06-0216-01 X 139587063 139587063 C T SOX3 Missense_Mutation p.A55T 0.30 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-06-0216-01 X 144906039 144906039 C T SLITRK2 Missense_Mutation p.P699L 0.33 deleterious(0) possibly_damaging(0.889) TCGA-06-0216-01 X 150348278 150348278 A G GPR50 Missense_Mutation p.M75V 0.31 tolerated(0.13) benign(0.02) TCGA-06-0216-01 X 24006559 24006559 C T KLHL15 Missense_Mutation p.G432S 0.05 deleterious(0) probably_damaging(0.999) TCGA-06-0216-01 X 54496521 54496521 G A FGD1 Silent p.D343D 0.36 TCGA-06-0216-01 X 70467290 70467290 C T ZMYM3 Missense_Mutation p.R740H 0.27 deleterious(0) possibly_damaging(0.841) TCGA-06-0219-01 10 102746475 102746475 T C MRPL43 Intron 0.43 TCGA-06-0219-01 10 75279522 75279522 C G USP54 Intron 0.50 TCGA-06-0219-01 10 90497505 90497505 T C LIPK Silent p.T261T 0.46 TCGA-06-0219-01 11 22391734 22391734 G C SLC17A6 Missense_Mutation p.K347N 0.26 tolerated(0.07) benign(0.159) TCGA-06-0219-01 11 4661423 4661423 C T OR51D1 Missense_Mutation p.R135C 0.26 deleterious(0) probably_damaging(1) TCGA-06-0219-01 11 7110545 7110545 C T RBMXL2 Missense_Mutation p.A65V 0.27 deleterious(0.01) probably_damaging(0.909) TCGA-06-0219-01 12 104390581 104390581 C T GLT8D2 Missense_Mutation p.A178T 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-06-0219-01 12 109696853 109696853 C T ACACB Missense_Mutation p.R2146W 0.25 deleterious(0) probably_damaging(0.935) TCGA-06-0219-01 12 112182642 112182642 G C ACAD10 Missense_Mutation p.S668T 0.35 tolerated(0.34) benign(0.092) TCGA-06-0219-01 12 21918727 21918727 T C KCNJ8 Missense_Mutation p.N402S 0.31 deleterious(0.03) probably_damaging(0.935) TCGA-06-0219-01 12 96052972 96052972 C T NTN4 Missense_Mutation p.E593K 0.30 tolerated(0.05) possibly_damaging(0.734) TCGA-06-0219-01 13 45554922 45554922 C T NUFIP1 Missense_Mutation p.D177N 0.42 deleterious(0) probably_damaging(1) TCGA-06-0219-01 14 76905790 76905790 C T ESRRB Missense_Mutation p.H32Y 0.48 tolerated_low_confidence(0.12) benign(0.013) TCGA-06-0219-01 17 71282053 71282053 G A CDC42EP4 Missense_Mutation p.A196V 0.08 tolerated(0.17) benign(0.017) TCGA-06-0219-01 18 5428421 5428421 C G EPB41L3 Missense_Mutation p.G319A 0.05 deleterious(0) probably_damaging(0.999) TCGA-06-0219-01 19 30935903 30935903 C G ZNF536 Missense_Mutation p.H478Q 0.27 tolerated(0.05) probably_damaging(0.996) TCGA-06-0219-01 19 36214780 36214780 C G KMT2B Missense_Mutation p.S1069C 0.52 possibly_damaging(0.79) TCGA-06-0219-01 19 3907818 3907818 G A ATCAY Missense_Mutation p.A149T 0.28 tolerated(0.46) benign(0.001) TCGA-06-0219-01 1 204953187 204953187 C T NFASC Intron 0.28 TCGA-06-0219-01 1 248402311 248402311 T C OR2M4 Silent p.L27L 0.32 TCGA-06-0219-01 1 249142450 249142450 T G ZNF672 Missense_Mutation p.L326R 0.33 deleterious(0) probably_damaging(1) TCGA-06-0219-01 1 249151478 249151478 G T ZNF692 Silent p.R149R 0.30 TCGA-06-0219-01 20 34572591 34572591 G A CNBD2 Missense_Mutation p.V203I 0.38 deleterious(0) possibly_damaging(0.864) TCGA-06-0219-01 20 61296586 61296586 C T SLCO4A1 Intron 0.50 TCGA-06-0219-01 21 11049547 11049547 C A BAGE2 RNA 0.04 TCGA-06-0219-01 22 24036509 24036509 G A RGL4 Intron 0.06 TCGA-06-0219-01 2 162804208 162804208 T C SLC4A10 Missense_Mutation p.F746L 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-06-0219-01 2 20840922 20840922 C A HS1BP3 Nonsense_Mutation p.E73* 0.28 TCGA-06-0219-01 2 28816883 28816883 C G PLB1 Intron 0.34 TCGA-06-0219-01 3 108568057 108568057 G T TRAT1 Nonsense_Mutation p.E87* 0.30 TCGA-06-0219-01 3 126236443 126236443 C T UROC1 Silent p.E40E 0.36 TCGA-06-0219-01 3 14942566 14942566 G - FGD5 Frame_Shift_Del 0.26 TCGA-06-0219-01 3 184071135 184071135 C T CLCN2 Missense_Mutation p.R644H 0.36 deleterious(0) probably_damaging(0.932) TCGA-06-0219-01 3 188327129 188327129 C T LPP Nonsense_Mutation p.Q204* 0.34 TCGA-06-0219-01 3 23959481 23959481 G A RPL15 Missense_Mutation p.R44Q 0.34 deleterious(0.04) benign(0.028) TCGA-06-0219-01 4 10445311 10445311 G T ZNF518B Missense_Mutation p.S881Y 0.38 tolerated(0.07) benign(0.005) TCGA-06-0219-01 4 7042928 7042928 G A CCDC96 3'UTR 0.30 TCGA-06-0219-01 5 101834438 101834438 T C SLCO6A1 Silent p.G37G 0.30 TCGA-06-0219-01 5 140719925 140719925 G A PCDHGA2 Missense_Mutation p.E463K 0.32 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-0219-01 5 23527628 23527628 C T PRDM9 Missense_Mutation p.R811W 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-06-0219-01 5 64887666 64887666 A G TRIM23 Missense_Mutation p.M552T 0.34 tolerated(0.65) benign(0) TCGA-06-0219-01 6 163985624 163985624 A G QKI Intron 0.29 TCGA-06-0219-01 6 33152017 33152017 C A COL11A2 Intron 0.05 TCGA-06-0219-01 6 97702431 97702431 A C MMS22L Splice_Site p.X373_splice 0.23 TCGA-06-0219-01 7 130365809 130365809 C T TSGA13 Missense_Mutation p.R50Q 0.26 tolerated(0.62) benign(0.002) TCGA-06-0219-01 8 113256758 113256758 C T CSMD3 Missense_Mutation p.V3423I 0.27 tolerated(0.4) benign(0.028) TCGA-06-0219-01 8 125047530 125047530 C T FER1L6 Nonsense_Mutation p.R767* 0.32 TCGA-06-0219-01 8 144940504 144940504 G A EPPK1 Silent p.A2306A 0.04 TCGA-06-0219-01 8 24339684 24339684 G A ADAM7 Silent p.T245T 0.28 TCGA-06-0219-01 8 54163341 54163341 C T OPRK1 Missense_Mutation p.R86Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-0219-01 8 99441436 99441436 T C KCNS2 Missense_Mutation p.F410S 0.27 deleterious(0) probably_damaging(0.979) TCGA-06-0219-01 9 105767700 105767700 G T CYLC2 Missense_Mutation p.D263Y 0.23 deleterious(0) unknown(0) TCGA-06-0219-01 9 85924522 85924522 T C FRMD3 Silent p.A285A 0.28 TCGA-06-0219-01 X 3235658 3235658 C T MXRA5 Missense_Mutation p.V2022I 0.63 tolerated(0.12) benign(0.26) TCGA-06-0221-01 10 98155083 98155083 C T TLL2 Silent p.T529T 0.40 TCGA-06-0221-01 11 4471261 4471261 C A OR52K2 Missense_Mutation p.A231D 0.04 deleterious(0.01) possibly_damaging(0.861) TCGA-06-0221-01 11 64329818 64329818 G A SLC22A11 Silent p.A244A 0.05 TCGA-06-0221-01 12 109278787 109278787 G A DAO Missense_Mutation p.R2H 0.09 tolerated(0.05) benign(0.011) TCGA-06-0221-01 12 53072470 53072470 G T KRT1 Missense_Mutation p.S221Y 0.45 deleterious(0.01) probably_damaging(0.974) TCGA-06-0221-01 12 56355103 56355103 T C PMEL Missense_Mutation p.N111S 0.06 deleterious(0) possibly_damaging(0.46) TCGA-06-0221-01 15 42054376 42054376 A G MGA Silent p.K2520K 0.20 TCGA-06-0221-01 16 51173066 51173066 G A SALL1 Missense_Mutation p.H1023Y 0.34 deleterious(0.02) possibly_damaging(0.836) TCGA-06-0221-01 17 61908445 61908445 A G PSMC5 Silent p.P243P 0.03 TCGA-06-0221-01 17 7578512 7578513 TC - TP53 Frame_Shift_Del p.K139Nfs*9 0.47 TCGA-06-0221-01 19 10224939 10224939 C T PPAN-P2RY11 Missense_Mutation p.P637L 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-0221-01 19 19049592 19049592 T C HOMER3 Missense_Mutation p.Y39C 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-0221-01 19 24310666 24310666 A G ZNF254 Missense_Mutation p.R622G 0.60 tolerated(0.18) benign(0.007) TCGA-06-0221-01 19 36212357 36212357 G A KMT2B Missense_Mutation p.S703N 0.10 possibly_damaging(0.827) TCGA-06-0221-01 19 50461706 50461706 C A SIGLEC11 Missense_Mutation p.E495D 0.30 tolerated(0.07) possibly_damaging(0.737) TCGA-06-0221-01 19 53669083 53669083 G C ZNF665 Missense_Mutation p.N220K 0.04 tolerated(0.34) benign(0.063) TCGA-06-0221-01 1 13515 13515 C A DDX11L1 RNA 0.18 TCGA-06-0221-01 1 13516 13516 C A DDX11L1 RNA 0.20 TCGA-06-0221-01 1 157771270 157771270 G A FCRL1 Silent p.Y328Y 0.34 TCGA-06-0221-01 1 169487691 169487691 G A F5 Missense_Mutation p.R2102C 0.37 deleterious(0) probably_damaging(1) TCGA-06-0221-01 1 209799210 209799210 T C LAMB3 Missense_Mutation p.T587A 0.08 tolerated(0.26) benign(0.012) TCGA-06-0221-01 1 43665064 43665064 T A WDR65 Missense_Mutation p.S478T 0.38 tolerated(0.27) benign(0.02) TCGA-06-0221-01 20 46271028 46271028 G T NCOA3 Missense_Mutation p.R1051I 0.07 tolerated(0.06) possibly_damaging(0.461) TCGA-06-0221-01 20 47266679 47266679 C T PREX1 Silent p.P961P 0.05 TCGA-06-0221-01 2 179414490 179414490 G A TTN Silent p.T30653T 0.08 TCGA-06-0221-01 2 209113113 209113113 G C IDH1 Missense_Mutation p.R132G 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-0221-01 2 225729691 225729691 C A DOCK10 Silent p.G457G 0.03 TCGA-06-0221-01 2 86702031 86702031 G A KDM3A Silent p.K619K 0.08 TCGA-06-0221-01 3 47161747 47161747 C T SETD2 Nonsense_Mutation p.W1460* 0.03 TCGA-06-0221-01 3 73433731 73433731 G A PDZRN3 Silent p.Y662Y 0.04 TCGA-06-0221-01 4 24838869 24838869 C T CCDC149 Missense_Mutation p.A215T 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-06-0221-01 4 72319251 72319251 G A SLC4A4 Silent p.A454A 0.06 TCGA-06-0221-01 5 101813473 101813473 T C SLCO6A1 Missense_Mutation p.T237A 0.43 tolerated(0.49) benign(0.05) TCGA-06-0221-01 5 154169931 154169932 GC - LARP1 Frame_Shift_Del p.R85Qfs*7 0.09 TCGA-06-0221-01 5 5182257 5182257 C - ADAMTS16 Frame_Shift_Del p.H202Tfs*20 0.22 TCGA-06-0221-01 6 127471594 127471594 T A RSPO3 Missense_Mutation p.C105S 0.43 deleterious(0) probably_damaging(0.998) TCGA-06-0221-01 6 151151882 151151882 C T PLEKHG1 Silent p.S545S 0.13 TCGA-06-0221-01 6 29640903 29640903 A G ZFP57 Missense_Mutation p.S329P 0.35 deleterious(0.01) benign(0.331) TCGA-06-0221-01 7 122634800 122634800 G A TAS2R16 3'UTR 0.25 TCGA-06-0221-01 7 143826382 143826382 C A OR2A14 Nonsense_Mutation p.Y59* 0.04 TCGA-06-0221-01 8 108334165 108334165 T C ANGPT1 Missense_Mutation p.D256G 0.06 deleterious(0.04) benign(0.26) TCGA-06-0221-01 8 27516827 27516827 C T SCARA3 Silent p.D380D 0.04 TCGA-06-0221-01 8 36663813 36663813 G A KCNU1 Silent p.K165K 0.43 TCGA-06-0221-01 9 35606965 35606965 C T TESK1 Silent p.R174R 0.33 TCGA-06-0221-01 9 73230918 73230918 A T TRPM3 Missense_Mutation p.M799K 0.08 deleterious(0.01) benign(0.344) TCGA-06-0221-01 X 53459205 53459205 C T HSD17B10 Missense_Mutation p.R116Q 0.62 tolerated(0.12) benign(0.068) TCGA-06-0221-01 X 76944376 76944376 G A ATRX Nonsense_Mutation p.Q177* 0.85 TCGA-06-0237-01 11 128781583 128781583 G A KCNJ5 Missense_Mutation p.A139T 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-06-0237-01 11 36596275 36596275 G A RAG1 Missense_Mutation p.R474H 0.35 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-06-0237-01 13 26620613 26620613 G A SHISA2 3'UTR 0.48 TCGA-06-0237-01 13 36202290 36202290 G A NBEA Missense_Mutation p.G2508R 0.29 deleterious(0) probably_damaging(1) TCGA-06-0237-01 14 24658023 24658023 G A IPO4 5'UTR 0.13 TCGA-06-0237-01 15 20657638 20657638 G A HERC2P3 RNA 0.28 TCGA-06-0237-01 16 30106203 30106203 G A YPEL3 Silent p.C97C 0.58 TCGA-06-0237-01 16 57597817 57597817 C T GPR114 Missense_Mutation p.R119W 0.06 tolerated(0.05) benign(0.009) TCGA-06-0237-01 17 33323604 33323604 C T LIG3 Silent p.F585F 0.38 TCGA-06-0237-01 17 48437602 48437602 G A XYLT2 Missense_Mutation p.D850N 0.45 deleterious(0) possibly_damaging(0.856) TCGA-06-0237-01 17 65733682 65733682 C - NOL11 Frame_Shift_Del p.T426Nfs*12 0.32 TCGA-06-0237-01 17 7578265 7578265 A G TP53 Missense_Mutation p.I195T 0.43 deleterious(0) probably_damaging(1) TCGA-06-0237-01 18 19997860 19997860 G A CTAGE1 5'UTR 0.85 TCGA-06-0237-01 18 76753975 76753975 T G SALL3 Missense_Mutation p.S662A 0.75 deleterious(0) possibly_damaging(0.476) TCGA-06-0237-01 19 15575112 15575112 G T RASAL3 Missense_Mutation p.L20M 0.09 deleterious(0.03) unknown(0) TCGA-06-0237-01 19 15989717 15989717 G A CYP4F2 Missense_Mutation p.A476V 0.40 tolerated(0.07) benign(0.022) TCGA-06-0237-01 19 20727313 20727313 C T ZNF737 3'UTR 0.25 TCGA-06-0237-01 19 35850542 35850542 C T FFAR3 Silent p.I250I 0.20 TCGA-06-0237-01 19 3586880 3586880 C T GIPC3 Silent p.I160I 0.53 TCGA-06-0237-01 19 41515926 41515926 A T CYP2B6 Missense_Mutation p.S284C 0.28 tolerated(0.07) benign(0.359) TCGA-06-0237-01 19 4268683 4268683 G A CCDC94 Missense_Mutation p.G321D 0.07 tolerated(0.43) benign(0.01) TCGA-06-0237-01 1 215933077 215933077 C T USH2A Missense_Mutation p.R3719H 0.43 probably_damaging(0.991) TCGA-06-0237-01 1 228346830 228346830 G A GJC2 3'UTR 0.40 TCGA-06-0237-01 1 228494689 228494689 C T OBSCN Missense_Mutation p.A4962V 0.49 benign(0.051) TCGA-06-0237-01 1 237813234 237813234 G A RYR2 Missense_Mutation p.V2524I 0.33 benign(0.352) TCGA-06-0237-01 1 24125491 24125491 C G GALE Missense_Mutation p.E3Q 0.05 tolerated(0.42) benign(0.003) TCGA-06-0237-01 1 978952 978952 C T AGRN Silent p.C546C 0.42 TCGA-06-0237-01 20 61596986 61596986 G A SLC17A9 Missense_Mutation p.V324I 0.40 tolerated(0.53) benign(0.016) TCGA-06-0237-01 20 62122078 62122078 C T EEF1A2 Silent p.T261T 0.42 TCGA-06-0237-01 21 38380466 38380466 G A RIPPLY3 Silent p.P38P 0.48 TCGA-06-0237-01 21 44841555 44841555 G T SIK1 Missense_Mutation p.N154K 0.49 deleterious(0) probably_damaging(1) TCGA-06-0237-01 3 10084272 10084272 G A FANCD2 Silent p.S271S 0.42 TCGA-06-0237-01 3 112005609 112005610 - A SLC9C1 Frame_Shift_Ins p.S11Qfs*3 0.37 TCGA-06-0237-01 3 142405148 142405148 T G PLS1 Missense_Mutation p.L304R 0.40 deleterious(0) probably_damaging(0.995) TCGA-06-0237-01 3 186256595 186256595 G T CRYGS Missense_Mutation p.P143T 0.39 deleterious(0.01) probably_damaging(0.965) TCGA-06-0237-01 3 49052853 49052853 G A WDR6 3'UTR 0.48 TCGA-06-0237-01 4 177136841 177136841 A G ASB5 Silent p.C300C 0.39 TCGA-06-0237-01 4 77252544 77252544 C T CCDC158 Silent p.S961S 0.39 TCGA-06-0237-01 4 84223361 84223361 C T HPSE Missense_Mutation p.V423M 0.40 deleterious(0) possibly_damaging(0.894) TCGA-06-0237-01 5 118810095 118810095 G C HSD17B4 Splice_Site p.X99_splice 0.48 TCGA-06-0237-01 5 140237348 140237348 C T PCDHA10 Missense_Mutation p.A572V 0.10 tolerated_low_confidence(0.2) benign(0.006) TCGA-06-0237-01 5 140307832 140307832 T C PCDHAC1 Missense_Mutation p.L452P 0.49 deleterious(0) possibly_damaging(0.758) TCGA-06-0237-01 5 154395374 154395374 G A KIF4B Missense_Mutation p.R652H 0.42 tolerated(0.06) benign(0.035) TCGA-06-0237-01 5 180687305 180687305 G A TRIM52 Silent p.H170H 0.04 TCGA-06-0237-01 5 55204208 55204208 C A IL31RA Silent p.I490I 0.35 TCGA-06-0237-01 6 163984752 163984755 GTAA - QKI Splice_Site p.X312_splice 0.41 TCGA-06-0237-01 6 38885721 38885721 C A DNAH8 Missense_Mutation p.F3226L 0.53 probably_damaging(0.967) TCGA-06-0237-01 7 139790907 139790907 C T KDM7A Missense_Mutation p.R938H 0.21 deleterious_low_confidence(0) probably_damaging(0.947) TCGA-06-0237-01 7 143885281 143885281 C A ARHGEF35 Missense_Mutation p.D66Y 0.19 deleterious(0.03) probably_damaging(0.946) TCGA-06-0237-01 7 21639469 21639469 T C DNAH11 Missense_Mutation p.I911T 0.31 benign(0.343) TCGA-06-0237-01 7 55210075 55210075 T G EGFR Missense_Mutation p.L62R 0.85 deleterious(0.01) probably_damaging(0.962) TCGA-06-0237-01 7 98256482 98256482 G A NPTX2 Silent p.A298A 0.26 TCGA-06-0237-01 9 15465495 15465497 CTC T PSIP1 3'UTR 0.70 TCGA-06-0237-01 X 134482891 134482891 G A ZNF449 Intron 0.44 TCGA-06-0237-01 X 27766165 27766165 G T DCAF8L2 Missense_Mutation p.G385C 0.09 deleterious(0) probably_damaging(0.985) TCGA-06-0237-01 X 37931389 37931389 G A SYTL5 Missense_Mutation p.R140Q 0.54 deleterious(0) probably_damaging(0.963) TCGA-06-0237-01 X 48317931 48317931 G A SLC38A5 Silent p.P436P 0.45 TCGA-06-0237-01 X 89177186 89177186 G A TGIF2LX Silent p.S34S 0.42 TCGA-06-0238-01 11 104900443 104900443 G A CASP1 Missense_Mutation p.P271S 0.20 tolerated(0.36) possibly_damaging(0.503) TCGA-06-0238-01 11 499889 499889 G A RNH1 Missense_Mutation p.A128V 0.08 tolerated(0.07) benign(0.019) TCGA-06-0238-01 11 7818165 7818165 C T OR5P2 Missense_Mutation p.V109I 0.42 deleterious(0.03) benign(0) TCGA-06-0238-01 11 9305021 9305021 A G TMEM41B Missense_Mutation p.S276P 0.09 deleterious(0.03) possibly_damaging(0.5) TCGA-06-0238-01 12 57910320 57910320 G A MARS Missense_Mutation p.E887K 0.10 tolerated(0.31) unknown(0) TCGA-06-0238-01 12 57911096 57911096 C A DDIT3 Missense_Mutation p.D55Y 0.32 deleterious(0) probably_damaging(0.961) TCGA-06-0238-01 12 57994645 57994645 G T PIP4K2C Missense_Mutation p.D289Y 0.07 deleterious(0) probably_damaging(0.963) TCGA-06-0238-01 12 57994848 57994848 C G PIP4K2C Missense_Mutation p.I356M 0.07 tolerated(0.1) benign(0.196) TCGA-06-0238-01 12 57995517 57995517 C G PIP4K2C 3'UTR 0.14 TCGA-06-0238-01 12 58140433 58140433 G A TSPAN31 Missense_Mutation p.R125K 0.03 tolerated(0.86) benign(0.002) TCGA-06-0238-01 13 20066995 20066995 A T TPTE2 Missense_Mutation p.S38R 0.32 tolerated_low_confidence(0.29) benign(0.054) TCGA-06-0238-01 14 106641676 106641676 C A IGHV1-18 Missense_Mutation p.A80S 0.31 tolerated(0.18) benign(0.055) TCGA-06-0238-01 14 71495452 71495452 A C PCNX Missense_Mutation p.I1168L 0.37 tolerated(1) benign(0.001) TCGA-06-0238-01 15 30003151 30003151 T C TJP1 Missense_Mutation p.Y1419C 0.12 deleterious_low_confidence(0.01) benign(0.049) TCGA-06-0238-01 15 80883952 80883952 G A ARNT2 Silent p.S654S 0.10 TCGA-06-0238-01 15 84324510 84324510 C A ADAMTSL3 5'UTR 0.21 TCGA-06-0238-01 16 11931690 11931690 G T RSL1D1 Missense_Mutation p.T476N 0.35 deleterious(0.02) possibly_damaging(0.717) TCGA-06-0238-01 16 18875133 18875133 A T SMG1 Silent p.S1178S 0.25 TCGA-06-0238-01 17 7577558 7577566 GGAACTGTT - TP53 In_Frame_Del p.N239_S241del 0.42 TCGA-06-0238-01 19 15298114 15298114 C T NOTCH3 Missense_Mutation p.D548N 0.32 tolerated(0.26) benign(0.109) TCGA-06-0238-01 19 40419695 40419695 C T FCGBP Missense_Mutation p.G1100D 0.09 probably_damaging(1) TCGA-06-0238-01 19 55494507 55494507 C T NLRP2 Missense_Mutation p.R481C 0.28 tolerated(0.24) benign(0.001) TCGA-06-0238-01 19 9271619 9271619 T A ZNF317 Missense_Mutation p.L433H 0.41 deleterious(0) probably_damaging(1) TCGA-06-0238-01 1 152732806 152732806 C T KPRP Missense_Mutation p.R248C 0.27 deleterious(0) probably_damaging(0.984) TCGA-06-0238-01 1 158577000 158577000 G A OR10Z1 Missense_Mutation p.V258M 0.35 tolerated(0.29) benign(0) TCGA-06-0238-01 1 158650498 158650498 C G SPTA1 Missense_Mutation p.E185Q 0.37 deleterious(0) probably_damaging(0.954) TCGA-06-0238-01 1 247464286 247464286 C T ZNF496 Silent p.K433K 0.37 TCGA-06-0238-01 1 248737752 248737752 C A OR2T34 Missense_Mutation p.G103W 0.43 deleterious(0) probably_damaging(0.984) TCGA-06-0238-01 1 47183765 47183765 T C EFCAB14 5'UTR 0.05 TCGA-06-0238-01 21 33975348 33975348 C T C21orf59 Intron 0.20 TCGA-06-0238-01 22 25023517 25023517 G A GGT1 Missense_Mutation p.G380D 0.08 deleterious(0) probably_damaging(0.996) TCGA-06-0238-01 2 128238721 128238721 G A IWS1 Nonsense_Mutation p.R787* 0.43 TCGA-06-0238-01 2 31805972 31805972 C T SRD5A2 RNA 0.19 TCGA-06-0238-01 2 95537569 95537569 G A TEKT4 Missense_Mutation p.R82H 0.42 deleterious(0.02) benign(0.173) TCGA-06-0238-01 3 125652530 125652530 A G ALG1L 5'UTR 0.08 TCGA-06-0238-01 4 30725870 30725870 A G PCDH7 Silent p.K942K 0.39 TCGA-06-0238-01 5 132202700 132202701 - G UQCRQ Frame_Shift_Ins p.E44Gfs*22 0.30 TCGA-06-0238-01 5 140167621 140167621 G A PCDHA1 Silent p.P582P 0.37 TCGA-06-0238-01 5 140720885 140720885 G A PCDHGA2 Missense_Mutation p.E783K 0.31 deleterious_low_confidence(0) benign(0.178) TCGA-06-0238-01 5 167627098 167627098 C G TENM2 Missense_Mutation p.A1131G 0.38 deleterious(0) probably_damaging(0.999) TCGA-06-0238-01 5 71627105 71627105 A G PTCD2 Missense_Mutation p.N124S 0.03 tolerated(0.05) benign(0.133) TCGA-06-0238-01 5 75428120 75428120 A G SV2C Missense_Mutation p.D182G 0.06 deleterious(0) possibly_damaging(0.866) TCGA-06-0238-01 6 33287338 33287338 A G DAXX Missense_Mutation p.S587P 0.44 tolerated(0.11) probably_damaging(0.992) TCGA-06-0238-01 6 83728822 83728822 C - UBE3D Frame_Shift_Del p.E294Nfs*3 0.29 TCGA-06-0238-01 7 117024817 117024817 A G ASZ1 Missense_Mutation p.M217T 0.22 tolerated(1) benign(0) TCGA-06-0238-01 7 142658531 142658531 G A KEL Missense_Mutation p.R47W 0.29 tolerated(0.19) benign(0.021) TCGA-06-0238-01 7 151927093 151927093 C A KMT2C Missense_Mutation p.G964V 0.05 probably_damaging(1) TCGA-06-0238-01 7 93516588 93516588 G A TFPI2 Missense_Mutation p.R206C 0.26 deleterious(0.01) probably_damaging(0.965) TCGA-06-0238-01 8 51362257 51362257 C A SNTG1 Silent p.V83V 0.06 TCGA-06-0238-01 9 116779034 116779034 C A ZNF618 Missense_Mutation p.Q260K 0.11 tolerated_low_confidence(0.19) possibly_damaging(0.789) TCGA-06-0238-01 9 82324566 82324566 G A TLE4 Missense_Mutation p.R431H 0.04 deleterious(0.01) probably_damaging(0.999) TCGA-06-0238-01 9 84605747 84605747 G A SPATA31D1 Missense_Mutation p.R121H 0.35 tolerated(0.06) benign(0.348) TCGA-06-0238-01 X 131515438 131515438 T A MBNL3 Intron 0.69 TCGA-06-0238-01 X 19431486 19431486 G T MAP3K15 Missense_Mutation p.P563T 0.68 deleterious(0.01) possibly_damaging(0.845) TCGA-06-0240-01 15 34105755 34105755 A G RYR3 Missense_Mutation p.M3493V 0.05 benign(0.387) TCGA-06-0240-01 15 39874573 39874573 C T THBS1 Missense_Mutation p.R83W 0.08 deleterious(0.02) benign(0.398) TCGA-06-0240-01 16 78064695 78064695 G A CLEC3A Missense_Mutation p.R193H 0.07 deleterious(0.01) benign(0.013) TCGA-06-0240-01 19 5844280 5844280 C T FUT3 Missense_Mutation p.E191K 0.03 tolerated(1) benign(0.002) TCGA-06-0240-01 19 9003616 9003616 G A MUC16 Missense_Mutation p.R13342C 0.03 possibly_damaging(0.607) TCGA-06-0240-01 5 149210432 149210432 C T PPARGC1B Missense_Mutation p.R190W 0.03 deleterious(0) probably_damaging(1) TCGA-06-0240-01 6 46658843 46658843 C T TDRD6 Missense_Mutation p.T993M 0.09 deleterious(0) probably_damaging(1) TCGA-06-0241-01 11 1251288 1251288 G A MUC5B Missense_Mutation p.C425Y 0.44 unknown(0) TCGA-06-0241-01 11 20099593 20099593 G A NAV2 Missense_Mutation p.A1764T 0.50 tolerated(0.63) probably_damaging(0.996) TCGA-06-0241-01 11 55065636 55065636 G T TRIM51HP RNA 0.38 TCGA-06-0241-01 11 61135530 61135530 G A TMEM138 Intron 0.62 TCGA-06-0241-01 11 89073272 89073272 A C NOX4 Missense_Mutation p.F469V 0.06 deleterious(0) probably_damaging(1) TCGA-06-0241-01 11 95564432 95564432 G T CEP57 3'UTR 0.51 TCGA-06-0241-01 12 57581183 57581183 C T LRP1 Silent p.V2325V 0.45 TCGA-06-0241-01 13 58207302 58207303 - A PCDH17 Frame_Shift_Ins p.H208Qfs*28 0.32 TCGA-06-0241-01 14 36789728 36789728 G T MBIP Missense_Mutation p.P23T 0.82 deleterious_low_confidence(0.05) possibly_damaging(0.766) TCGA-06-0241-01 15 48787734 48787734 C T FBN1 Missense_Mutation p.S824N 0.43 benign(0.02) TCGA-06-0241-01 15 86123972 86123972 C T AKAP13 Silent p.D891D 0.44 TCGA-06-0241-01 15 89859631 89859631 A G FANCI Missense_Mutation p.T1310A 0.29 tolerated_low_confidence(0.15) benign(0.008) TCGA-06-0241-01 16 31308885 31308885 C T ITGAM Silent p.N469N 0.43 TCGA-06-0241-01 16 67208778 67208778 G A NOL3 Silent p.Q180Q 0.45 TCGA-06-0241-01 16 67337179 67337179 C T KCTD19 Silent p.E171E 0.42 TCGA-06-0241-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.64 deleterious(0) probably_damaging(1) TCGA-06-0241-01 19 22785434 22785434 G C AC011467.1 5'Flank 0.41 TCGA-06-0241-01 19 367156 367156 C T THEG Silent p.P274P 0.42 TCGA-06-0241-01 19 48511941 48511941 G C ELSPBP1 Missense_Mutation p.S6T 0.34 tolerated_low_confidence(0.25) benign(0.005) TCGA-06-0241-01 19 55147232 55147232 G A AC009892.10 3'UTR 0.44 TCGA-06-0241-01 19 55648471 55648471 C T TNNT1 Missense_Mutation p.R204Q 0.59 tolerated_low_confidence(0.05) benign(0.094) TCGA-06-0241-01 19 57327999 57327999 C T PEG3 Missense_Mutation p.R604H 0.46 tolerated(0.58) benign(0.039) TCGA-06-0241-01 1 118165644 118165644 G A FAM46C Missense_Mutation p.V52I 0.40 tolerated(0.65) possibly_damaging(0.766) TCGA-06-0241-01 1 120165750 120165750 C A ZNF697 Nonsense_Mutation p.E406* 0.43 TCGA-06-0241-01 1 154294529 154294529 G A AQP10 Missense_Mutation p.V76I 0.44 tolerated(0.12) benign(0.123) TCGA-06-0241-01 1 156255048 156255048 G A TMEM79 Missense_Mutation p.E11K 0.36 deleterious_low_confidence(0.01) benign(0.438) TCGA-06-0241-01 1 3407152 3407152 C T MEGF6 Silent p.A1522A 0.59 TCGA-06-0241-01 1 36932400 36932400 G A CSF3R Missense_Mutation p.T717M 0.47 tolerated(0.17) benign(0) TCGA-06-0241-01 20 42163558 42163558 G - L3MBTL1 Frame_Shift_Del p.G579Dfs*78 0.31 TCGA-06-0241-01 20 62326129 62326129 G T RTEL1 Missense_Mutation p.V1073L 0.42 tolerated_low_confidence(0.17) benign(0.001) TCGA-06-0241-01 2 101655055 101655055 G T TBC1D8 Silent p.I366I 0.46 TCGA-06-0241-01 2 102959995 102959995 C G IL1RL1 Intron 0.50 TCGA-06-0241-01 2 141597647 141597647 A T LRP1B Missense_Mutation p.Y1708N 0.43 possibly_damaging(0.485) TCGA-06-0241-01 2 239079168 239079168 C T ILKAP 3'UTR 0.38 TCGA-06-0241-01 2 71060827 71060827 C T CD207 Missense_Mutation p.R172Q 0.46 tolerated(0.99) benign(0.002) TCGA-06-0241-01 2 89544529 89544529 G A IGKV2-30 Missense_Mutation p.P32L 0.31 tolerated(0.07) benign(0.04) TCGA-06-0241-01 3 14814422 14814422 C T C3orf20 3'UTR 0.45 TCGA-06-0241-01 3 183454552 183454552 G A YEATS2 Missense_Mutation p.V287I 0.42 tolerated(0.17) benign(0.028) TCGA-06-0241-01 3 37547525 37547525 G A ITGA9 Silent p.P259P 0.24 TCGA-06-0241-01 3 5214343 5214343 A G ARL8B Missense_Mutation p.D97G 0.44 deleterious(0) probably_damaging(0.998) TCGA-06-0241-01 3 65376868 65376868 G T MAGI1 Missense_Mutation p.P789T 0.38 deleterious(0.01) probably_damaging(0.996) TCGA-06-0241-01 4 123107257 123107257 C T KIAA1109 Missense_Mutation p.S142L 0.42 benign(0.306) TCGA-06-0241-01 4 125593092 125593092 A G ANKRD50 Missense_Mutation p.L447S 0.41 deleterious(0) probably_damaging(0.995) TCGA-06-0241-01 4 152096196 152096196 G C SH3D19 Missense_Mutation p.P107R 0.43 deleterious(0) probably_damaging(0.996) TCGA-06-0241-01 4 55130132 55130132 A C PDGFRA Intron 0.01 TCGA-06-0241-01 4 55955634 55955634 G A KDR Missense_Mutation p.S1104F 0.02 deleterious(0) probably_damaging(0.998) TCGA-06-0241-01 5 140176220 140176220 C T PCDHA2 Silent p.D557D 0.40 TCGA-06-0241-01 5 145598558 145598558 G A RBM27 Missense_Mutation p.D24N 0.48 deleterious(0) probably_damaging(0.996) TCGA-06-0241-01 5 149922522 149922522 A G NDST1 Silent p.K653K 0.41 TCGA-06-0241-01 6 143074691 143074691 A G HIVEP2 Silent p.T2298T 0.37 TCGA-06-0241-01 6 166571992 166571992 G T T Silent p.A373A 0.41 TCGA-06-0241-01 6 31133413 31133413 A G POU5F1 Missense_Mutation p.C198R 0.43 deleterious(0) probably_damaging(0.98) TCGA-06-0241-01 6 31829050 31829050 T C NEU1 Missense_Mutation p.D177G 0.49 deleterious(0.02) probably_damaging(0.996) TCGA-06-0241-01 6 99374897 99374897 G A FBXL4 5'UTR 0.44 TCGA-06-0241-01 7 102953526 102953526 A G DNAJC2 Silent p.P553P 0.27 TCGA-06-0241-01 7 103281043 103281043 C T RELN Silent p.P672P 0.27 TCGA-06-0241-01 7 135047676 135047676 G - CNOT4 Frame_Shift_Del p.T702Qfs*80 0.24 TCGA-06-0241-01 7 77973153 77973153 C T MAGI2 Silent p.L450L 0.30 TCGA-06-0241-01 8 144808129 144808129 C T FAM83H Missense_Mutation p.V1168M 0.38 tolerated(1) benign(0.004) TCGA-06-0241-01 9 107332367 107332367 G T OR13C8 Missense_Mutation p.V307F 0.05 deleterious(0) benign(0.282) TCGA-06-0241-01 9 35608190 35608190 C G TESK1 Missense_Mutation p.L277V 0.23 deleterious(0) possibly_damaging(0.542) TCGA-06-0241-01 9 5765489 5765489 G A KIAA1432 Missense_Mutation p.D973N 0.38 deleterious(0.01) benign(0.044) TCGA-06-0241-01 X 107412771 107412771 G A COL4A6 Silent p.I1216I 0.46 TCGA-06-0241-01 X 119602806 119602806 T A LAMP2 Intron 0.52 TCGA-06-0241-01 X 135081058 135081058 C T SLC9A6 Nonsense_Mutation p.Q242* 0.39 TCGA-06-0241-01 X 153033730 153033730 C T PLXNB3 Silent p.G394G 0.42 TCGA-06-0241-01 X 30260976 30260976 C T MAGEB4 Nonsense_Mutation p.R242* 0.44 TCGA-06-0241-01 X 30872355 30872355 C T TAB3 Missense_Mutation p.R476H 0.44 tolerated(1) benign(0.001) TCGA-06-0241-01 X 46951551 46951551 C G RGN Missense_Mutation p.C262W 0.36 deleterious(0) probably_damaging(0.948) TCGA-06-0241-01 X 47098522 47098522 G A USP11 Missense_Mutation p.G120E 0.39 tolerated(0.09) benign(0.424) TCGA-06-0241-01 X 56291902 56291902 C A KLF8 Missense_Mutation p.T124K 0.40 deleterious(0.01) possibly_damaging(0.524) TCGA-06-0241-01 X 56592046 56592046 C T UBQLN2 Silent p.V580V 0.45 TCGA-06-0241-01 X 63445208 63445208 G A ASB12 Missense_Mutation p.T108M 0.43 deleterious(0) probably_damaging(0.989) TCGA-06-0241-01 X 69595167 69595167 G A KIF4A Missense_Mutation p.R631H 0.39 tolerated(0.88) benign(0) TCGA-06-0241-01 X 76937238 76937238 T C ATRX Silent p.Q1170Q 0.48 TCGA-06-0241-01 X 78427380 78427380 C T GPR174 Silent p.Y292Y 0.39 TCGA-06-0644-01 10 126691658 126691658 C T CTBP2 Missense_Mutation p.V617M 0.41 deleterious(0) possibly_damaging(0.507) TCGA-06-0644-01 10 48389546 48389546 G A RBP3 Silent p.F444F 0.42 TCGA-06-0644-01 10 89711988 89711989 TA - PTEN Frame_Shift_Del p.I203Sfs*39 0.32 TCGA-06-0644-01 11 56230656 56230656 G A OR5M9 Silent p.N74N 0.30 TCGA-06-0644-01 12 108013833 108013833 C A BTBD11 Silent p.L841L 0.29 TCGA-06-0644-01 12 20522696 20522696 G A PDE3A Missense_Mutation p.A160T 0.30 tolerated(0.12) probably_damaging(0.977) TCGA-06-0644-01 12 6457006 6457006 T A SCNN1A 3'UTR 0.19 TCGA-06-0644-01 12 657400 657400 C T B4GALNT3 Nonsense_Mutation p.R264* 0.28 TCGA-06-0644-01 12 91348191 91348191 C T CCER1 Missense_Mutation p.R110Q 0.20 tolerated(0.16) benign(0.146) TCGA-06-0644-01 13 37607599 37607599 G A SUPT20H Missense_Mutation p.R232C 0.35 tolerated(0.2) benign(0.006) TCGA-06-0644-01 14 100118715 100118715 C T HHIPL1 Missense_Mutation p.A137V 0.47 tolerated(0.13) possibly_damaging(0.612) TCGA-06-0644-01 14 24683351 24683351 G A NEDD8-MDP1 Missense_Mutation p.T154I 0.44 deleterious(0.02) possibly_damaging(0.763) TCGA-06-0644-01 14 39746076 39746076 T C CTAGE5 Intron 0.11 TCGA-06-0644-01 14 89084607 89084607 G A EML5 Silent p.A1869A 0.09 TCGA-06-0644-01 14 94847444 94847444 G A SERPINA1 Silent p.T227T 0.60 TCGA-06-0644-01 15 40247830 40247830 G T EIF2AK4 Nonsense_Mutation p.E202* 0.20 TCGA-06-0644-01 15 68468841 68468841 G T PIAS1 Missense_Mutation p.V444L 0.27 tolerated(0.75) benign(0) TCGA-06-0644-01 15 90784827 90784827 C T GDPGP1 Silent p.P229P 0.35 TCGA-06-0644-01 16 80718568 80718568 G A CDYL2 Silent p.A161A 0.24 TCGA-06-0644-01 17 19015770 19015770 T C SNORD3D RNA 0.15 TCGA-06-0644-01 17 67148603 67148603 C T ABCA10 Missense_Mutation p.V1386I 0.13 tolerated(0.64) benign(0.014) TCGA-06-0644-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.30 deleterious(0) probably_damaging(1) TCGA-06-0644-01 18 3134669 3134669 T C MYOM1 Missense_Mutation p.N788S 0.24 tolerated(0.06) possibly_damaging(0.764) TCGA-06-0644-01 18 63477003 63477003 A G CDH7 Missense_Mutation p.S92G 0.13 tolerated(1) benign(0.002) TCGA-06-0644-01 19 1816329 1816329 C T REXO1 Missense_Mutation p.V1158M 0.33 deleterious(0) probably_damaging(1) TCGA-06-0644-01 19 39408375 39408375 G A SARS2 Silent p.G385G 0.31 TCGA-06-0644-01 19 50397588 50397588 G A IL4I1 Silent p.Y190Y 0.33 TCGA-06-0644-01 19 8841802 8841802 C T OR2Z1 Missense_Mutation p.R138C 0.27 deleterious(0.03) benign(0.01) TCGA-06-0644-01 1 10192468 10192468 C G UBE4B Silent p.G651G 0.22 TCGA-06-0644-01 1 196884116 196884116 C A CFHR4 Missense_Mutation p.P462H 0.26 deleterious(0.01) possibly_damaging(0.871) TCGA-06-0644-01 1 214815836 214815836 C T CENPF Silent p.D1385D 0.33 TCGA-06-0644-01 1 37307528 37307528 C T GRIK3 Missense_Mutation p.V447I 0.34 deleterious(0.04) probably_damaging(0.99) TCGA-06-0644-01 1 55148429 55148429 G A MROH7 Missense_Mutation p.V828I 0.34 tolerated(0.1) benign(0.1) TCGA-06-0644-01 1 86340334 86340334 G A COL24A1 Missense_Mutation p.R1046W 0.18 deleterious(0) probably_damaging(0.977) TCGA-06-0644-01 20 31814297 31814297 G T BPIFA3 Splice_Site p.X207_splice 0.26 TCGA-06-0644-01 20 41306674 41306674 T C PTPRT Missense_Mutation p.T329A 0.25 tolerated(0.32) possibly_damaging(0.815) TCGA-06-0644-01 21 34399532 34399532 T A OLIG2 Missense_Mutation p.M121K 0.26 deleterious(0) probably_damaging(0.995) TCGA-06-0644-01 21 47544566 47544566 C T COL6A2 Missense_Mutation p.A558V 0.19 deleterious(0.02) probably_damaging(0.984) TCGA-06-0644-01 2 131520943 131520943 C A AMER3 Missense_Mutation p.P433H 0.33 deleterious(0.05) probably_damaging(0.995) TCGA-06-0644-01 2 69207121 69207121 T A GKN1 Missense_Mutation p.L145Q 0.30 tolerated(0.06) probably_damaging(0.993) TCGA-06-0644-01 3 66449417 66449417 C T LRIG1 Silent p.S403S 0.28 TCGA-06-0644-01 4 55561758 55561758 G A KIT Missense_Mutation p.V50M 0.36 tolerated(0.26) possibly_damaging(0.592) TCGA-06-0644-01 4 72338689 72338689 T C SLC4A4 Splice_Site p.X635_splice 0.04 TCGA-06-0644-01 4 88362984 88362984 T C NUDT9 Silent p.N149N 0.18 TCGA-06-0644-01 4 9784011 9784011 G A DRD5 Missense_Mutation p.D120N 0.30 deleterious(0) probably_damaging(1) TCGA-06-0644-01 5 127712445 127712445 G C FBN2 Missense_Mutation p.P651A 0.27 deleterious(0.04) possibly_damaging(0.902) TCGA-06-0644-01 5 140580521 140580521 G A PCDHB11 Missense_Mutation p.V392M 0.31 tolerated_low_confidence(0.07) benign(0.16) TCGA-06-0644-01 5 17354522 17354522 G A CTD-2139B15.2 RNA 0.34 TCGA-06-0644-01 5 23524499 23524499 A T PRDM9 Missense_Mutation p.H336L 0.33 deleterious(0) benign(0.001) TCGA-06-0644-01 5 26906907 26906907 G A CDH9 Silent p.D188D 0.32 TCGA-06-0644-01 6 128319982 128319982 C T PTPRK Silent p.G854G 0.32 TCGA-06-0644-01 6 27219612 27219612 G A PRSS16 Silent p.T267T 0.13 TCGA-06-0644-01 6 37138555 37138557 AGA - PIM1 In_Frame_Del p.K31del 0.41 TCGA-06-0644-01 6 39282613 39282613 C T KCNK16 3'UTR 0.43 TCGA-06-0644-01 6 87725488 87725488 G A HTR1E Missense_Mutation p.V146I 0.14 deleterious(0.03) probably_damaging(0.958) TCGA-06-0644-01 7 103137114 103137114 G A RELN Nonsense_Mutation p.R3018* 0.21 TCGA-06-0644-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.16 deleterious(0) probably_damaging(0.967) TCGA-06-0644-01 7 151093239 151093239 G A WDR86 Missense_Mutation p.R117W 0.19 deleterious(0) probably_damaging(1) TCGA-06-0644-01 7 26766511 26766511 C T SKAP2 Missense_Mutation p.R195H 0.07 deleterious(0.02) probably_damaging(0.926) TCGA-06-0644-01 7 50660761 50660761 T C GRB10 Missense_Mutation p.D558G 0.17 deleterious(0) probably_damaging(0.998) TCGA-06-0644-01 7 82544904 82544904 C T PCLO Missense_Mutation p.R4133H 0.19 unknown(0) TCGA-06-0644-01 7 87083895 87083895 C T ABCB4 Silent p.L100L 0.15 TCGA-06-0644-01 8 104709403 104709403 C T RIMS2 Missense_Mutation p.A89V 0.23 deleterious_low_confidence(0) possibly_damaging(0.859) TCGA-06-0644-01 9 115652489 115652489 G A SLC46A2 Missense_Mutation p.A158V 0.41 tolerated(0.05) possibly_damaging(0.907) TCGA-06-0644-01 9 125316158 125316158 G A OR1N2 Missense_Mutation p.R237H 0.29 tolerated(0.89) benign(0.008) TCGA-06-0644-01 9 137622156 137622156 C T COL5A1 Silent p.V333V 0.31 TCGA-06-0644-01 9 96080166 96080166 G A WNK2 Missense_Mutation p.G2251R 0.24 unknown(0) TCGA-06-0644-01 X 105855511 105855511 G A CXorf57 Silent p.V67V 0.64 TCGA-06-0644-01 X 12939911 12939911 G A TLR8 Missense_Mutation p.E918K 0.55 deleterious(0) probably_damaging(0.973) TCGA-06-0644-01 X 3229308 3229308 G A MXRA5 Silent p.N2312N 0.71 TCGA-06-0644-01 X 69282717 69282717 G C OTUD6A Missense_Mutation p.A115P 0.50 tolerated(0.06) possibly_damaging(0.864) TCGA-06-0644-01 Y 4967730 4967730 T - PCDH11Y Frame_Shift_Del p.F705Sfs*26 0.44 TCGA-06-0645-01 10 112328741 112328741 G C SMC3 Missense_Mutation p.D21H 0.18 deleterious(0) possibly_damaging(0.906) TCGA-06-0645-01 10 112341821 112341821 C G SMC3 Missense_Mutation p.Q230E 0.25 tolerated(0.39) benign(0.015) TCGA-06-0645-01 10 115668096 115668096 G A NHLRC2 Missense_Mutation p.S661N 0.50 tolerated(0.81) benign(0.001) TCGA-06-0645-01 11 130069961 130069961 C T ST14 Silent p.C641C 0.04 TCGA-06-0645-01 11 72945705 72945705 C T P2RY2 Silent p.P167P 0.34 TCGA-06-0645-01 12 105455479 105455479 G T ALDH1L2 Missense_Mutation p.Q325K 0.30 tolerated_low_confidence(1) benign(0.001) TCGA-06-0645-01 12 110230485 110230485 G A TRPV4 Missense_Mutation p.T599M 0.25 tolerated(0.83) probably_damaging(0.951) TCGA-06-0645-01 12 124330629 124330629 C T DNAH10 Silent p.Y1796Y 0.29 TCGA-06-0645-01 12 46757576 46757576 C T SLC38A2 Silent p.K329K 0.05 TCGA-06-0645-01 12 57005685 57005685 G A BAZ2A Missense_Mutation p.S496F 0.42 tolerated(0.07) benign(0.002) TCGA-06-0645-01 14 24878300 24878300 C A NYNRIN Missense_Mutation p.P434T 0.49 deleterious_low_confidence(0.04) possibly_damaging(0.588) TCGA-06-0645-01 14 67864439 67864439 G T PLEK2 Silent p.G49G 0.30 TCGA-06-0645-01 15 77473255 77473255 T C PEAK1 Silent p.S338S 0.34 TCGA-06-0645-01 15 78921872 78921872 C T CHRNB4 Missense_Mutation p.D259N 0.39 deleterious(0.03) benign(0.31) TCGA-06-0645-01 15 88576210 88576210 A G NTRK3 Missense_Mutation p.I488T 0.20 tolerated(0.75) benign(0.006) TCGA-06-0645-01 16 19729642 19729642 G C IQCK Missense_Mutation p.R5P 0.30 tolerated_low_confidence(0.25) benign(0.011) TCGA-06-0645-01 16 4834042 4834042 G A SEPT12 Silent p.N134N 0.06 TCGA-06-0645-01 17 30632431 30632431 G A RHBDL3 Missense_Mutation p.V285I 0.38 tolerated(0.12) benign(0.009) TCGA-06-0645-01 17 8243550 8243550 C T ODF4 Missense_Mutation p.R61C 0.54 deleterious(0) probably_damaging(0.995) TCGA-06-0645-01 19 14046600 14046600 G A PODNL1 Missense_Mutation p.A150V 0.21 tolerated(0.5) benign(0.062) TCGA-06-0645-01 19 14857101 14857101 A C EMR2 Missense_Mutation p.I709S 0.25 tolerated(0.08) probably_damaging(0.996) TCGA-06-0645-01 19 17086872 17086872 G A CPAMD8 Silent p.V663V 0.23 TCGA-06-0645-01 19 38126468 38126468 G A ZFP30 Missense_Mutation p.P325L 0.21 deleterious(0.02) probably_damaging(1) TCGA-06-0645-01 19 39086283 39086283 C T MAP4K1 Missense_Mutation p.V756M 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-0645-01 19 50666296 50666296 G A IZUMO2 Silent p.R52R 0.12 TCGA-06-0645-01 19 55107682 55107682 G A LILRA1 Silent p.S329S 0.23 TCGA-06-0645-01 19 56466478 56466478 G A NLRP8 Missense_Mutation p.V352I 0.27 tolerated(0.52) benign(0.032) TCGA-06-0645-01 19 622950 622950 C A POLRMT Missense_Mutation p.E442D 0.06 deleterious(0.01) possibly_damaging(0.517) TCGA-06-0645-01 1 152732729 152732729 G A KPRP Missense_Mutation p.R222Q 0.37 tolerated(1) benign(0) TCGA-06-0645-01 1 19166593 19166593 G A TAS1R2 Missense_Mutation p.R674C 0.31 deleterious(0) probably_damaging(0.989) TCGA-06-0645-01 1 24657929 24657929 C T GRHL3 Missense_Mutation p.R11W 0.33 deleterious(0.01) possibly_damaging(0.623) TCGA-06-0645-01 1 248112496 248112496 C A OR2L8 Missense_Mutation p.L113I 0.34 tolerated(0.18) benign(0.206) TCGA-06-0645-01 1 25678146 25678146 G T TMEM50A Missense_Mutation p.R79L 0.04 deleterious(0.04) benign(0.1) TCGA-06-0645-01 20 55027872 55027872 T C CASS4 Missense_Mutation p.L547P 0.46 deleterious(0) probably_damaging(1) TCGA-06-0645-01 21 19744570 19744570 A T TMPRSS15 Missense_Mutation p.L202I 0.22 tolerated(0.13) benign(0.272) TCGA-06-0645-01 21 45655287 45655287 C T ICOSLG Missense_Mutation p.V189I 0.16 tolerated(0.14) benign(0.384) TCGA-06-0645-01 2 114489225 114489225 G T SLC35F5 Missense_Mutation p.S307R 0.29 deleterious(0.03) possibly_damaging(0.497) TCGA-06-0645-01 2 121050907 121050907 G A RALB 3'UTR 0.30 TCGA-06-0645-01 2 163204201 163204201 T C GCA Silent p.Y47Y 0.30 TCGA-06-0645-01 2 182374515 182374515 A C ITGA4 Missense_Mutation p.K609T 0.28 tolerated(0.08) probably_damaging(0.932) TCGA-06-0645-01 2 227924195 227924195 G A COL4A4 Missense_Mutation p.P770L 0.35 probably_damaging(0.913) TCGA-06-0645-01 2 31483602 31483602 C T EHD3 Silent p.I243I 0.05 TCGA-06-0645-01 3 139280096 139280096 G T NMNAT3 Missense_Mutation p.P135Q 0.06 deleterious(0) probably_damaging(0.961) TCGA-06-0645-01 3 46490484 46490484 C T LTF Missense_Mutation p.R361H 0.10 tolerated(0.11) benign(0.088) TCGA-06-0645-01 3 47890010 47890010 G A DHX30 Missense_Mutation p.D849N 0.33 tolerated(0.42) benign(0.001) TCGA-06-0645-01 3 50327467 50327467 C G IFRD2 Missense_Mutation p.V211L 0.38 tolerated(0.29) benign(0.016) TCGA-06-0645-01 3 98251667 98251667 G A GPR15 Missense_Mutation p.A264T 0.26 tolerated(0.24) possibly_damaging(0.886) TCGA-06-0645-01 4 113351620 113351620 G T ALPK1 Missense_Mutation p.C306F 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-0645-01 4 152203364 152203364 C T PRSS48 Missense_Mutation p.R94C 0.25 deleterious(0.03) benign(0.339) TCGA-06-0645-01 4 79366682 79366682 G A FRAS1 Missense_Mutation p.R1891H 0.32 benign(0.009) TCGA-06-0645-01 4 8605806 8605806 G A CPZ Silent p.T200T 0.19 TCGA-06-0645-01 5 170883763 170883763 C T FGF18 Missense_Mutation p.T193M 0.21 deleterious(0.02) probably_damaging(0.939) TCGA-06-0645-01 5 19520782 19520782 T A CDH18 Missense_Mutation p.N499I 0.05 deleterious(0) possibly_damaging(0.756) TCGA-06-0645-01 5 41382221 41382221 C T PLCXD3 Silent p.A173A 0.15 TCGA-06-0645-01 6 136600997 136600997 C T BCLAF1 Missense_Mutation p.R3H 0.06 deleterious_low_confidence(0) unknown(0) TCGA-06-0645-01 6 152265483 152265483 C T ESR1 Silent p.A312A 0.28 TCGA-06-0645-01 6 152461284 152461284 C T SYNE1 Missense_Mutation p.R8420Q 0.04 probably_damaging(0.993) TCGA-06-0645-01 7 100674888 100674888 C T MUC17 Missense_Mutation p.A64V 0.12 benign(0.011) TCGA-06-0645-01 7 143174982 143174982 C T TAS2R41 Missense_Mutation p.T6M 0.20 deleterious(0) unknown(0) TCGA-06-0645-01 7 143175836 143175836 C T TAS2R41 Nonsense_Mutation p.R291* 0.18 TCGA-06-0645-01 7 87795154 87795154 G A ADAM22 Missense_Mutation p.S695N 0.16 tolerated(0.16) possibly_damaging(0.548) TCGA-06-0645-01 7 99672770 99672770 C G ZNF3 Missense_Mutation p.V87L 0.17 tolerated(1) probably_damaging(0.992) TCGA-06-0645-01 7 99746576 99746576 C T LAMTOR4 5'UTR 0.15 TCGA-06-0645-01 8 110476724 110476724 G A PKHD1L1 Missense_Mutation p.D2555N 0.26 deleterious(0) probably_damaging(0.968) TCGA-06-0645-01 8 142229845 142229845 C T SLC45A4 Missense_Mutation p.A121T 0.26 deleterious(0) benign(0.276) TCGA-06-0645-01 8 73849053 73849053 C T KCNB2 Missense_Mutation p.S488L 0.30 deleterious(0) probably_damaging(0.975) TCGA-06-0645-01 8 95547143 95547143 T C KIAA1429 Silent p.R136R 0.29 TCGA-06-0645-01 9 105767804 105767804 G A CYLC2 Silent p.T297T 0.25 TCGA-06-0645-01 X 100809321 100809321 G A ARMCX1 3'UTR 0.38 TCGA-06-0645-01 X 118726479 118726479 A T NKRF Intron 0.33 TCGA-06-0645-01 X 119410833 119410833 G A TMEM255A Silent p.L218L 0.27 TCGA-06-0645-01 X 131513624 131513624 C T MBNL3 3'UTR 0.39 TCGA-06-0645-01 X 134986679 134986679 C T SAGE1 Silent p.N88N 0.26 TCGA-06-0645-01 X 135430793 135430793 C T GPR112 Missense_Mutation p.T1643M 0.33 deleterious(0) possibly_damaging(0.893) TCGA-06-0645-01 X 153633852 153633852 G A DNASE1L1 Missense_Mutation p.R20C 0.29 deleterious(0) probably_damaging(0.995) TCGA-06-0645-01 X 26212572 26212572 G A MAGEB6 Silent p.A203A 0.38 TCGA-06-0646-01 10 135203245 135203245 C T PAOX Silent p.G462G 0.58 TCGA-06-0646-01 11 111225126 111225126 A G POU2AF1 Missense_Mutation p.S211P 0.49 deleterious(0.04) probably_damaging(0.999) TCGA-06-0646-01 11 118919049 118919049 A - HYOU1 Frame_Shift_Del p.S763Pfs*30 0.29 TCGA-06-0646-01 11 125505406 125505406 A T CHEK1 Missense_Mutation p.K232N 0.28 tolerated(0.32) benign(0.12) TCGA-06-0646-01 11 85374845 85374845 T G CREBZF 3'UTR 0.43 TCGA-06-0646-01 12 22778163 22778163 C G ETNK1 Silent p.L22L 0.43 TCGA-06-0646-01 12 29757135 29757135 G A TMTC1 Missense_Mutation p.A409V 0.42 deleterious(0) probably_damaging(0.997) TCGA-06-0646-01 14 55529424 55529424 G T MAPK1IP1L Missense_Mutation p.G36V 0.73 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-06-0646-01 16 31202308 31202308 G A FUS Missense_Mutation p.R473H 0.50 tolerated_low_confidence(0.1) possibly_damaging(0.84) TCGA-06-0646-01 16 3458844 3458844 G A ZNF174 Silent p.Q383Q 0.51 TCGA-06-0646-01 16 70190589 70190589 T G PDPR Missense_Mutation p.F816C 0.17 deleterious(0) possibly_damaging(0.843) TCGA-06-0646-01 16 77229553 77229553 G A MON1B Missense_Mutation p.A473T 0.41 tolerated(0.13) benign(0.349) TCGA-06-0646-01 16 84183927 84183927 C T DNAAF1 Missense_Mutation p.T111M 0.41 deleterious(0.01) probably_damaging(0.962) TCGA-06-0646-01 17 2966349 2966349 G T OR1D5 Missense_Mutation p.L185M 0.26 tolerated(0.08) probably_damaging(1) TCGA-06-0646-01 17 5042663 5042663 C T USP6 Missense_Mutation p.R398W 0.13 tolerated_low_confidence(0.13) possibly_damaging(0.689) TCGA-06-0646-01 17 56288050 56288050 C T MKS1 Missense_Mutation p.V332I 0.69 tolerated(0.67) benign(0.05) TCGA-06-0646-01 17 73555474 73555474 G C LLGL2 Silent p.S171S 0.17 TCGA-06-0646-01 17 78355436 78355436 G A RNF213 Silent p.K4629K 0.04 TCGA-06-0646-01 18 28584256 28584256 C T DSC3 Silent p.R655R 0.35 TCGA-06-0646-01 19 9090417 9090417 G C MUC16 Missense_Mutation p.S466R 0.33 unknown(0) TCGA-06-0646-01 1 157718679 157718679 G T FCRL2 Missense_Mutation p.P460Q 0.39 deleterious(0) probably_damaging(0.974) TCGA-06-0646-01 1 179965731 179965731 G A CEP350 Missense_Mutation p.E147K 0.41 possibly_damaging(0.611) TCGA-06-0646-01 1 2115956 2115956 A C PRKCZ Intron 0.33 TCGA-06-0646-01 1 237802446 237802446 G A RYR2 Missense_Mutation p.A2354T 0.32 benign(0.043) TCGA-06-0646-01 1 247712375 247712375 C T GCSAML 5'Flank 0.31 TCGA-06-0646-01 1 32740011 32740011 A T LCK Silent p.I27I 0.38 TCGA-06-0646-01 1 46027470 46027470 G A AKR1A1 Missense_Mutation p.A2T 0.47 tolerated(0.21) benign(0.001) TCGA-06-0646-01 1 46086575 46086575 C T CCDC17 Silent p.Q533Q 0.22 TCGA-06-0646-01 1 51436083 51436083 A - CDKN2C Frame_Shift_Del p.R15Gfs*4 0.40 TCGA-06-0646-01 20 30689234 30689234 C T HCK Missense_Mutation p.P498L 0.43 deleterious(0) probably_damaging(0.982) TCGA-06-0646-01 20 45023078 45023078 G A ELMO2 Missense_Mutation p.P15L 0.38 tolerated(0.17) benign(0.334) TCGA-06-0646-01 3 183906608 183906608 A G ABCF3 Missense_Mutation p.E299G 0.05 deleterious(0) probably_damaging(0.991) TCGA-06-0646-01 3 65342645 65342645 G A MAGI1 Missense_Mutation p.P1266L 0.36 tolerated(0.35) benign(0.006) TCGA-06-0646-01 4 144141519 144141519 A T USP38 Silent p.G1013G 0.39 TCGA-06-0646-01 4 56348941 56348941 G A CLOCK Silent p.T4T 0.35 TCGA-06-0646-01 4 7719828 7719828 G A SORCS2 Missense_Mutation p.R781Q 0.40 tolerated(0.09) benign(0.04) TCGA-06-0646-01 5 140532029 140532029 C G PCDHB6 Missense_Mutation p.P731A 0.27 deleterious(0.03) benign(0.213) TCGA-06-0646-01 7 103191709 103191709 G A RELN Missense_Mutation p.A2036V 0.28 tolerated(0.25) benign(0.152) TCGA-06-0646-01 7 142639989 142639989 G A KEL Silent p.D638D 0.34 TCGA-06-0646-01 7 80433493 80433493 A G SEMA3C Missense_Mutation p.F244L 0.25 tolerated(0.06) benign(0.015) TCGA-06-0646-01 7 94037543 94037543 C T COL1A2 Missense_Mutation p.P230S 0.27 unknown(0) TCGA-06-0646-01 7 98552870 98552870 G A TRRAP Silent p.E1953E 0.24 TCGA-06-0646-01 8 139606337 139606337 C T COL22A1 Missense_Mutation p.R1513Q 0.35 unknown(0) TCGA-06-0646-01 8 15998426 15998426 G A MSR1 Intron 0.44 TCGA-06-0646-01 X 70823913 70823913 G A ACRC Silent p.S262S 0.05 TCGA-06-0648-01 10 128973691 128973691 C T FAM196A Silent p.S323S 0.75 TCGA-06-0648-01 10 18270258 18270258 G A SLC39A12 Silent p.R314R 0.82 TCGA-06-0648-01 11 130281492 130281492 C T ADAMTS8 Missense_Mutation p.V524M 0.45 tolerated(0.13) benign(0.02) TCGA-06-0648-01 11 1973439 1973439 G C MRPL23 Missense_Mutation p.G75R 0.46 deleterious(0) probably_damaging(0.998) TCGA-06-0648-01 11 22239813 22239813 T G ANO5 Missense_Mutation p.F54V 0.40 tolerated(0.05) probably_damaging(0.994) TCGA-06-0648-01 11 55606889 55606889 C A OR5D16 Missense_Mutation p.A221E 0.41 deleterious(0) benign(0.219) TCGA-06-0648-01 11 69949227 69949227 G A ANO1 Missense_Mutation p.C166Y 0.28 deleterious(0) probably_damaging(0.921) TCGA-06-0648-01 11 73627614 73627614 G A PAAF1 Missense_Mutation p.A282T 0.45 deleterious(0.01) possibly_damaging(0.829) TCGA-06-0648-01 11 74559419 74559419 A G XRRA1 Missense_Mutation p.M482T 0.49 tolerated(0.35) benign(0.002) TCGA-06-0648-01 12 118016952 118016952 G A KSR2 Missense_Mutation p.L433F 0.37 tolerated(0.35) possibly_damaging(0.889) TCGA-06-0648-01 12 119866567 119866567 G A CCDC60 Missense_Mutation p.R57H 0.34 deleterious(0) probably_damaging(0.961) TCGA-06-0648-01 12 131487816 131487816 G T GPR133 Missense_Mutation p.Q371H 0.44 tolerated(0.29) benign(0.002) TCGA-06-0648-01 12 53208029 53208029 G A KRT4 5'UTR 0.43 TCGA-06-0648-01 12 64588399 64588399 G A C12orf66 Silent p.F187F 0.42 TCGA-06-0648-01 13 114321752 114321752 C T GRK1 Silent p.A17A 0.40 TCGA-06-0648-01 13 36428681 36428681 C T DCLK1 Silent p.S330S 0.08 TCGA-06-0648-01 14 105410846 105410846 A G AHNAK2 Missense_Mutation p.F3648L 0.39 probably_damaging(0.916) TCGA-06-0648-01 14 31139520 31139520 C G SCFD1 Missense_Mutation p.A305G 0.06 tolerated(0.2) benign(0.006) TCGA-06-0648-01 14 94780400 94780400 C T SERPINA6 Missense_Mutation p.V196I 0.43 tolerated(1) benign(0.001) TCGA-06-0648-01 15 101586198 101586198 C T LRRK1 Silent p.P992P 0.53 TCGA-06-0648-01 15 101970260 101970260 G A PCSK6 Silent p.Y221Y 0.25 TCGA-06-0648-01 15 45392270 45392270 G A DUOX2 Silent p.G1054G 0.77 TCGA-06-0648-01 15 76205599 76205599 T - FBXO22 Frame_Shift_Del p.S113Vfs*37 0.29 TCGA-06-0648-01 15 99670079 99670079 C T SYNM Missense_Mutation p.T504M 0.19 tolerated(0.05) benign(0.139) TCGA-06-0648-01 17 3181738 3181738 G A OR3A2 Silent p.N164N 0.42 TCGA-06-0648-01 17 36873166 36873166 C T MLLT6 Missense_Mutation p.S528F 0.32 deleterious(0.01) unknown(0) TCGA-06-0648-01 17 56247707 56247707 G A OR4D2 Missense_Mutation p.E231K 0.44 tolerated(0.08) benign(0.026) TCGA-06-0648-01 17 7736507 7736507 G A DNAH2 Missense_Mutation p.R4366Q 0.11 possibly_damaging(0.686) TCGA-06-0648-01 18 20979531 20979531 A T TMEM241 Missense_Mutation p.L93Q 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-06-0648-01 19 17000381 17000381 C T F2RL3 Intron 0.35 TCGA-06-0648-01 19 40095888 40095888 C T LGALS13 Nonsense_Mutation p.R55* 0.22 TCGA-06-0648-01 19 42187746 42187746 G A CEACAM7 Missense_Mutation p.R226C 0.37 tolerated(0.05) benign(0.147) TCGA-06-0648-01 19 45322967 45322967 C T BCAM Missense_Mutation p.R583W 0.60 deleterious(0.01) possibly_damaging(0.517) TCGA-06-0648-01 19 52272072 52272072 G A FPR2 Missense_Mutation p.R54Q 0.39 tolerated(0.11) possibly_damaging(0.477) TCGA-06-0648-01 19 58421366 58421366 A C ZNF417 Missense_Mutation p.C94G 0.27 deleterious(0.01) probably_damaging(0.974) TCGA-06-0648-01 1 100155525 100155525 C G PALMD Intron 0.49 TCGA-06-0648-01 1 100706430 100706430 C T DBT Missense_Mutation p.R21H 0.37 tolerated_low_confidence(0.66) benign(0.003) TCGA-06-0648-01 1 150202934 150202934 A G ANP32E Missense_Mutation p.I100T 0.44 deleterious(0) probably_damaging(0.998) TCGA-06-0648-01 1 156374429 156374431 CTT - C1orf61 Intron 0.46 TCGA-06-0648-01 1 214505455 214505455 C A SMYD2 Nonsense_Mutation p.Y344* 0.34 TCGA-06-0648-01 20 39788360 39788360 A G PLCG1 Missense_Mutation p.Y111C 0.46 deleterious(0.02) benign(0.03) TCGA-06-0648-01 20 44571848 44571848 C T PCIF1 Silent p.S262S 0.06 TCGA-06-0648-01 21 37632972 37632972 C G DOPEY2 Intron 0.42 TCGA-06-0648-01 21 45107441 45107441 C T RRP1B Missense_Mutation p.L396F 0.42 tolerated(0.41) benign(0.391) TCGA-06-0648-01 22 24487684 24487684 G A CABIN1 Missense_Mutation p.V1225I 0.50 tolerated(0.47) probably_damaging(0.981) TCGA-06-0648-01 2 179556814 179556814 G T TTN Missense_Mutation p.P10564H 0.41 TCGA-06-0648-01 2 179569962 179569962 C T TTN Missense_Mutation p.R9848Q 0.41 TCGA-06-0648-01 2 63815423 63815423 G A WDPCP 5'UTR 0.69 TCGA-06-0648-01 2 86992995 86992995 G A RMND5A Silent p.L234L 0.52 TCGA-06-0648-01 3 111842437 111842437 A G GCSAM Silent p.P136P 0.09 TCGA-06-0648-01 3 14862435 14862435 C T FGD5 Silent p.F619F 0.50 TCGA-06-0648-01 3 183907351 183907351 C A ABCF3 Missense_Mutation p.P374T 0.58 tolerated(0.07) benign(0.04) TCGA-06-0648-01 4 106863540 106863540 C A NPNT Missense_Mutation p.D310E 0.07 tolerated(0.26) benign(0.018) TCGA-06-0648-01 4 166960565 166960565 C T TLL1 Silent p.D411D 0.35 TCGA-06-0648-01 4 183594220 183594220 C T TENM3 Nonsense_Mutation p.R392* 0.34 TCGA-06-0648-01 4 183594343 183594343 C T TENM3 Missense_Mutation p.R433W 0.34 deleterious(0) possibly_damaging(0.689) TCGA-06-0648-01 4 187557880 187557880 G A FAT1 Silent p.T1277T 0.39 TCGA-06-0648-01 4 30724267 30724267 A G PCDH7 Missense_Mutation p.E408G 0.43 tolerated(0.05) possibly_damaging(0.853) TCGA-06-0648-01 4 5630350 5630350 G A EVC2 Missense_Mutation p.R608C 0.46 deleterious(0) probably_damaging(1) TCGA-06-0648-01 4 74702791 74702791 C A CXCL6 Missense_Mutation p.Q74K 0.13 tolerated(0.07) possibly_damaging(0.46) TCGA-06-0648-01 4 9889261 9889261 G A SLC2A9 Silent p.H407H 0.38 TCGA-06-0648-01 5 118503534 118503534 A G DMXL1 Missense_Mutation p.I1791M 0.09 deleterious(0) probably_damaging(0.952) TCGA-06-0648-01 5 148620291 148620291 C G ABLIM3 Silent p.S419S 0.03 TCGA-06-0648-01 5 168112727 168112727 C T SLIT3 Missense_Mutation p.A1174T 0.41 tolerated(0.43) benign(0.028) TCGA-06-0648-01 5 171479966 171479966 C T STK10 Silent p.K911K 0.35 TCGA-06-0648-01 5 176765541 176765541 G A LMAN2 Silent p.N127N 0.39 TCGA-06-0648-01 5 179132740 179132740 G A CANX Missense_Mutation p.A20T 0.41 tolerated(0.43) benign(0.004) TCGA-06-0648-01 6 144809879 144809879 T A UTRN Missense_Mutation p.V1348D 0.15 tolerated(0.1) probably_damaging(0.934) TCGA-06-0648-01 6 30552069 30552069 G - ABCF1 Frame_Shift_Del p.E402Nfs*11 0.36 TCGA-06-0648-01 6 31496741 31496741 T C MCCD1 5'UTR 0.39 TCGA-06-0648-01 6 40359856 40359856 C T LRFN2 Silent p.A732A 0.54 TCGA-06-0648-01 6 40996138 40996138 C T UNC5CL Missense_Mutation p.G511S 0.32 tolerated_low_confidence(0.09) benign(0.009) TCGA-06-0648-01 7 142104279 142104279 C A TRBV6-9 Silent p.L62L 0.22 TCGA-06-0648-01 7 23830449 23830449 C T STK31 Nonsense_Mutation p.R882* 0.04 TCGA-06-0648-01 7 5330480 5330480 A G SLC29A4 Missense_Mutation p.H96R 0.20 deleterious(0.01) possibly_damaging(0.838) TCGA-06-0648-01 8 48889249 48889249 A G MCM4 Missense_Mutation p.I835V 0.45 tolerated(1) benign(0.007) TCGA-06-0648-01 9 104238682 104238682 G A TMEM246 Silent p.R231R 0.37 TCGA-06-0648-01 9 106885401 106885401 A G SMC2 Silent p.L715L 0.45 TCGA-06-0648-01 9 117071558 117071558 C T COL27A1 Missense_Mutation p.R1746W 0.39 unknown(0) TCGA-06-0648-01 9 117359986 117359986 G A ATP6V1G1 Missense_Mutation p.R107Q 0.41 tolerated(0.17) benign(0.003) TCGA-06-0648-01 9 139620466 139620466 G A FAM69B 3'Flank 0.48 TCGA-06-0648-01 9 140351900 140351900 C T NSMF Missense_Mutation p.R196H 0.05 tolerated_low_confidence(0.07) benign(0.029) TCGA-06-0648-01 9 19050524 19050525 - TTG RRAGA In_Frame_Ins p.N289_I290insL 0.43 TCGA-06-0648-01 9 84547688 84547688 G A RP11-383M4.6 Intron 0.31 TCGA-06-0648-01 X 55650926 55650926 A C FOXR2 Missense_Mutation p.D261A 0.91 tolerated(1) benign(0.002) TCGA-06-0648-01 X 591909 591909 G A SHOX Missense_Mutation p.G93R 0.38 tolerated(0.45) benign(0.013) TCGA-06-0649-01 10 116060363 116060363 G A AFAP1L2 Silent p.V543V 0.38 TCGA-06-0649-01 10 117607492 117607492 T G ATRNL1 Silent p.P1336P 0.34 TCGA-06-0649-01 10 129913850 129913850 T A MKI67 Missense_Mutation p.K274N 0.08 tolerated(0.15) benign(0.063) TCGA-06-0649-01 10 26939497 26939497 A C LINC00202-2 RNA 0.23 TCGA-06-0649-01 10 50667268 50667268 T C ERCC6 Missense_Mutation p.K1359E 0.48 tolerated(0.15) benign(0.014) TCGA-06-0649-01 10 55582616 55582616 G A PCDH15 Missense_Mutation p.P1626S 0.05 deleterious_low_confidence(0.02) benign(0.004) TCGA-06-0649-01 10 92509172 92509172 G A HTR7 Missense_Mutation p.T240M 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-06-0649-01 11 102477401 102477401 C T MMP20 Missense_Mutation p.R273Q 0.17 tolerated(0.34) benign(0.018) TCGA-06-0649-01 11 128994764 128994764 A G ARHGAP32 Missense_Mutation p.I84T 0.04 tolerated(0.16) possibly_damaging(0.791) TCGA-06-0649-01 11 3687530 3687530 C T CHRNA10 Missense_Mutation p.R387Q 0.08 tolerated(0.55) benign(0.015) TCGA-06-0649-01 11 55703265 55703265 G A OR5I1 Silent p.Y204Y 0.14 TCGA-06-0649-01 11 59630104 59630104 G T TCN1 Missense_Mutation p.H117Q 0.13 tolerated(0.11) benign(0.063) TCGA-06-0649-01 11 92624150 92624150 G C FAT3 Silent p.S4547S 0.45 TCGA-06-0649-01 12 14827688 14827688 G A GUCY2C Nonsense_Mutation p.R319* 0.32 TCGA-06-0649-01 12 2786282 2786282 G T CACNA1C Missense_Mutation p.K1665N 0.26 deleterious(0) probably_damaging(0.983) TCGA-06-0649-01 12 57868660 57868660 C T ARHGAP9 Missense_Mutation p.R550K 0.50 tolerated(0.14) benign(0.23) TCGA-06-0649-01 12 9144889 9144889 A - KLRG1 Frame_Shift_Del p.Q57Rfs*24 0.22 TCGA-06-0649-01 13 50243922 50243922 C A EBPL Missense_Mutation p.A78S 0.19 deleterious(0.03) possibly_damaging(0.9) TCGA-06-0649-01 14 105420083 105420083 G C AHNAK2 Missense_Mutation p.Q569E 0.06 benign(0.017) TCGA-06-0649-01 14 24709082 24709082 C T TINF2 Missense_Mutation p.C426Y 0.33 tolerated_low_confidence(0.47) benign(0) TCGA-06-0649-01 14 64953897 64953897 C T ZBTB25 Missense_Mutation p.C351Y 0.34 deleterious(0) probably_damaging(1) TCGA-06-0649-01 14 75017917 75017917 C T LTBP2 Silent p.P512P 0.36 TCGA-06-0649-01 14 95085658 95085658 A T SERPINA3 Missense_Mutation p.E257V 0.27 deleterious(0) possibly_damaging(0.666) TCGA-06-0649-01 15 102346502 102346502 A G OR4F6 Missense_Mutation p.T194A 0.51 deleterious_low_confidence(0.03) benign(0.008) TCGA-06-0649-01 16 319599 319599 G A ITFG3 3'UTR 0.09 TCGA-06-0649-01 16 34739680 34739680 T C RP11-80F22.15 RNA 0.08 TCGA-06-0649-01 16 50783900 50783900 A G CYLD Silent p.T97T 0.27 TCGA-06-0649-01 16 85813200 85813200 C T EMC8 3'UTR 0.35 TCGA-06-0649-01 17 32483431 32483431 G A ASIC2 Missense_Mutation p.R41W 0.28 deleterious(0) probably_damaging(0.995) TCGA-06-0649-01 17 37687203 37687203 C T CDK12 Silent p.T1369T 0.12 TCGA-06-0649-01 17 38812778 38812778 A C KRT222 Nonsense_Mutation p.L255* 0.14 TCGA-06-0649-01 17 41244603 41244603 G A BRCA1 Missense_Mutation p.P982L 0.28 tolerated(0.13) benign(0.02) TCGA-06-0649-01 17 61657190 61657190 C A DCAF7 Intron 0.29 TCGA-06-0649-01 17 63545650 63545650 G A AXIN2 Missense_Mutation p.T315M 0.10 deleterious(0) probably_damaging(0.999) TCGA-06-0649-01 17 66033587 66033587 G A KPNA2 Silent p.P63P 0.35 TCGA-06-0649-01 17 74679964 74679964 C T MXRA7 Intron 0.15 TCGA-06-0649-01 17 74900424 74900424 G A MGAT5B Missense_Mutation p.V215I 0.48 tolerated(0.24) benign(0.046) TCGA-06-0649-01 17 77081816 77081816 G A ENGASE Silent p.Q605Q 0.44 TCGA-06-0649-01 18 2705783 2705783 G T SMCHD1 Missense_Mutation p.G645V 0.28 deleterious(0) probably_damaging(1) TCGA-06-0649-01 18 28710546 28710546 C T DSC1 Silent p.E872E 0.36 TCGA-06-0649-01 18 29437807 29437807 C T TRAPPC8 Missense_Mutation p.G962S 0.29 tolerated(0.8) benign(0.001) TCGA-06-0649-01 18 67345078 67345078 G A DOK6 Missense_Mutation p.R133Q 0.17 tolerated(0.22) possibly_damaging(0.664) TCGA-06-0649-01 19 13876915 13876915 G C MRI1 Silent p.L173L 0.15 TCGA-06-0649-01 19 17692256 17692256 G T COLGALT1 3'UTR 0.28 TCGA-06-0649-01 19 35642244 35642244 C A FXYD7 Intron 0.19 TCGA-06-0649-01 19 37129609 37129609 G A ZNF461 Silent p.G546G 0.24 TCGA-06-0649-01 19 38861189 38861189 C T CATSPERG Silent p.G1079G 0.15 TCGA-06-0649-01 19 53302703 53302703 C T ZNF28 3'UTR 0.38 TCGA-06-0649-01 19 53303202 53303202 C G ZNF28 Missense_Mutation p.E632D 0.32 deleterious(0.01) possibly_damaging(0.605) TCGA-06-0649-01 19 53304215 53304215 C T ZNF28 Missense_Mutation p.A295T 0.33 deleterious(0) benign(0.002) TCGA-06-0649-01 19 53304299 53304299 C G ZNF28 Missense_Mutation p.D267H 0.39 deleterious(0) possibly_damaging(0.724) TCGA-06-0649-01 19 54746595 54746595 C T LILRA6 Silent p.T2T 0.28 TCGA-06-0649-01 19 55449588 55449588 C T NLRP7 Silent p.P651P 0.15 TCGA-06-0649-01 19 57335864 57335864 A T PEG3 Missense_Mutation p.Y54N 0.05 deleterious(0) possibly_damaging(0.486) TCGA-06-0649-01 19 6677935 6677935 G A C3 Silent p.G1650G 0.32 TCGA-06-0649-01 1 159802791 159802791 C T SLAMF8 Nonsense_Mutation p.R165* 0.17 TCGA-06-0649-01 1 179310266 179310266 T G SOAT1 Missense_Mutation p.F201V 0.22 tolerated(0.51) benign(0.004) TCGA-06-0649-01 1 186088926 186088926 C T HMCN1 Silent p.N4002N 0.35 TCGA-06-0649-01 1 225598033 225598033 C T LBR Missense_Mutation p.S425N 0.09 tolerated(0.27) possibly_damaging(0.903) TCGA-06-0649-01 1 26691247 26691247 C T ZNF683 Missense_Mutation p.G264S 0.27 tolerated(0.07) possibly_damaging(0.728) TCGA-06-0649-01 1 32620313 32620317 AGAGC - KPNA6 Frame_Shift_Del p.E44Tfs*4 0.17 TCGA-06-0649-01 1 34209005 34209005 G A CSMD2 Silent p.P643P 0.06 TCGA-06-0649-01 1 45307671 45307671 G C PTCH2 Missense_Mutation p.A38G 0.22 deleterious(0.01) benign(0.081) TCGA-06-0649-01 1 6517297 6517297 C T ESPN Silent p.L793L 0.42 TCGA-06-0649-01 21 15599674 15599674 A T RBM11 3'UTR 0.13 TCGA-06-0649-01 21 18933729 18933729 C T CXADR Silent p.I256I 0.33 TCGA-06-0649-01 21 43519135 43519135 T G UMODL1 Missense_Mutation p.V344G 0.31 deleterious(0) possibly_damaging(0.883) TCGA-06-0649-01 22 39966921 39966921 C T CACNA1I Missense_Mutation p.A55V 0.19 tolerated(0.08) benign(0.073) TCGA-06-0649-01 2 103324656 103324656 C A SLC9A2 Missense_Mutation p.P716Q 0.33 tolerated(0.63) benign(0.004) TCGA-06-0649-01 2 128867271 128867271 A G UGGT1 Missense_Mutation p.T158A 0.26 tolerated(0.13) benign(0.004) TCGA-06-0649-01 2 209308179 209308179 G C PTH2R Missense_Mutation p.G206R 0.22 tolerated(0.15) benign(0.424) TCGA-06-0649-01 2 234869493 234869493 A G TRPM8 Missense_Mutation p.E479G 0.06 deleterious(0) probably_damaging(0.997) TCGA-06-0649-01 2 238283454 238283454 C T COL6A3 Missense_Mutation p.A1094T 0.21 probably_damaging(0.997) TCGA-06-0649-01 2 71592818 71592818 T G ZNF638 Silent p.A659A 0.22 TCGA-06-0649-01 3 108819325 108819325 G T MORC1 Silent p.R85R 0.05 TCGA-06-0649-01 3 186508171 186508173 CAT - RFC4 In_Frame_Del p.D275del 0.31 TCGA-06-0649-01 3 30691812 30691812 A T TGFBR2 Missense_Mutation p.K130M 0.09 tolerated(0.11) benign(0.335) TCGA-06-0649-01 3 42729720 42729720 C T KLHL40 Silent p.S413S 0.30 TCGA-06-0649-01 4 110662016 110662016 A G CFI 3'UTR 0.27 TCGA-06-0649-01 4 114274747 114274747 T C ANK2 Missense_Mutation p.V1658A 0.06 benign(0.001) TCGA-06-0649-01 4 15632339 15632339 T G FBXL5 Missense_Mutation p.E281A 0.21 deleterious(0.02) possibly_damaging(0.507) TCGA-06-0649-01 4 56336906 56336906 G T CLOCK Missense_Mutation p.T139N 0.18 deleterious(0) probably_damaging(0.998) TCGA-06-0649-01 4 69962642 69962642 A T UGT2B7 Missense_Mutation p.K135I 0.30 deleterious(0.03) probably_damaging(0.913) TCGA-06-0649-01 4 70351106 70351106 G T UGT2B4 Missense_Mutation p.A377D 0.27 deleterious(0) benign(0.276) TCGA-06-0649-01 5 11236806 11236806 G A CTNND2 Silent p.A586A 0.10 TCGA-06-0649-01 5 168098222 168098222 C T SLIT3 Missense_Mutation p.D1370N 0.24 tolerated(0.39) benign(0.042) TCGA-06-0649-01 6 161127532 161127532 A G PLG Missense_Mutation p.E48G 0.38 deleterious(0) possibly_damaging(0.864) TCGA-06-0649-01 6 17826293 17826293 A G KIF13A Missense_Mutation p.L532P 0.15 deleterious(0) probably_damaging(1) TCGA-06-0649-01 6 29054831 29054831 A T OR2B3 Missense_Mutation p.N65K 0.06 deleterious(0) possibly_damaging(0.844) TCGA-06-0649-01 6 32372722 32372722 C T BTNL2 Missense_Mutation p.V141I 0.12 tolerated(0.06) probably_damaging(0.997) TCGA-06-0649-01 6 87796012 87796012 C T CGA Missense_Mutation p.V77I 0.30 tolerated(1) benign(0.013) TCGA-06-0649-01 7 107720190 107720190 A C LAMB4 Silent p.V581V 0.11 TCGA-06-0649-01 7 143095767 143095767 G C EPHA1 Silent p.A421A 0.06 TCGA-06-0649-01 7 150269791 150269791 C T GIMAP4 Silent p.R211R 0.27 TCGA-06-0649-01 7 30174862 30174862 C T MTURN Missense_Mutation p.P37L 0.23 deleterious_low_confidence(0.01) probably_damaging(0.958) TCGA-06-0649-01 7 31855588 31855588 C T PDE1C Missense_Mutation p.R648H 0.20 tolerated_low_confidence(0.25) benign(0.001) TCGA-06-0649-01 7 40228112 40228112 G A SUGCT Missense_Mutation p.R89Q 0.12 deleterious(0) probably_damaging(1) TCGA-06-0649-01 7 44112863 44112863 G C POLM 3'UTR 0.12 TCGA-06-0649-01 7 55223624 55223624 G A EGFR Missense_Mutation p.G331R 0.12 deleterious(0.02) probably_damaging(0.941) TCGA-06-0649-01 7 71130459 71130459 A T WBSCR17 Nonsense_Mutation p.K382* 0.06 TCGA-06-0649-01 7 73011056 73011056 G A MLXIPL Missense_Mutation p.R579W 0.33 deleterious(0.01) probably_damaging(0.973) TCGA-06-0649-01 7 80390932 80390932 C A SEMA3C Missense_Mutation p.K495N 0.23 deleterious(0) possibly_damaging(0.907) TCGA-06-0649-01 7 82581469 82581469 C T PCLO Missense_Mutation p.A2934T 0.15 unknown(0) TCGA-06-0649-01 7 92761300 92761300 T C SAMD9L Missense_Mutation p.R1329G 0.24 deleterious(0) probably_damaging(0.978) TCGA-06-0649-01 7 92848596 92848596 G A HEPACAM2 Missense_Mutation p.S83F 0.25 tolerated(0.25) probably_damaging(0.997) TCGA-06-0649-01 8 126056120 126056120 C T KIAA0196 Missense_Mutation p.A933T 0.35 tolerated(0.38) possibly_damaging(0.857) TCGA-06-0649-01 8 142367229 142367229 C A GPR20 Silent p.A265A 0.34 TCGA-06-0649-01 8 36693858 36693858 T A KCNU1 Missense_Mutation p.I447K 0.21 deleterious(0) possibly_damaging(0.839) TCGA-06-0649-01 8 74893724 74893724 A C TMEM70 Missense_Mutation p.K217N 0.04 deleterious(0) probably_damaging(0.995) TCGA-06-0649-01 9 130489287 130489287 G T TTC16 Silent p.S488S 0.26 TCGA-06-0649-01 9 137309139 137309139 A T RXRA Missense_Mutation p.Y249F 0.36 tolerated(0.27) benign(0.265) TCGA-06-0649-01 9 2104169 2104169 G A SMARCA2 Missense_Mutation p.G1098S 0.40 probably_damaging(0.959) TCGA-06-0649-01 9 32630069 32630069 G A TAF1L 3'UTR 0.62 TCGA-06-0649-01 9 73152156 73152156 G T TRPM3 Missense_Mutation p.N1279K 0.08 tolerated(0.61) benign(0.047) TCGA-06-0649-01 9 77377948 77377948 A G TRPM6 Silent p.D1213D 0.21 TCGA-06-0649-01 9 78969093 78969093 C A PCSK5 Missense_Mutation p.P1711T 0.50 tolerated(0.43) benign(0.007) TCGA-06-0649-01 X 109764479 109764479 G A TDGF1P3 RNA 0.28 TCGA-06-0649-01 X 129155121 129155121 G A BCORL1 Silent p.E1201E 0.24 TCGA-06-0649-01 X 129506901 129506901 C A SLC25A14 Missense_Mutation p.Q319K 0.21 deleterious(0.03) possibly_damaging(0.619) TCGA-06-0649-01 X 142596854 142596854 C T SPANXN3 Silent p.Q72Q 0.28 TCGA-06-0649-01 X 142967366 142967366 G A UBE2NL Missense_Mutation p.R55H 0.27 deleterious(0) benign(0.027) TCGA-06-0649-01 X 142967428 142967428 A G UBE2NL Missense_Mutation p.I76V 0.30 tolerated(0.12) benign(0.12) TCGA-06-0649-01 X 153278845 153278845 C T IRAK1 Missense_Mutation p.G527R 0.23 tolerated(0.22) possibly_damaging(0.55) TCGA-06-0649-01 X 154225292 154225292 A T F8 Missense_Mutation p.V115D 0.28 deleterious(0) probably_damaging(0.953) TCGA-06-0649-01 X 23019452 23019452 G T DDX53 Missense_Mutation p.M426I 0.27 tolerated(0.53) benign(0.425) TCGA-06-0649-01 X 48775821 48775821 G A PIM2 Nonsense_Mutation p.R55* 0.24 TCGA-06-0650-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.11 TCGA-06-0650-01 11 1096432 1096432 G A MUC2 Missense_Mutation p.V2153M 0.10 unknown(0) TCGA-06-0650-01 11 48145364 48145364 G A PTPRJ Silent p.P272P 0.13 TCGA-06-0650-01 11 49974317 49974317 G T OR4C13 Missense_Mutation p.V115L 0.14 deleterious_low_confidence(0.02) benign(0.378) TCGA-06-0650-01 11 64939756 64939756 C A SPDYC Missense_Mutation p.H100N 0.10 tolerated(1) benign(0.002) TCGA-06-0650-01 11 77632412 77632412 G C INTS4 Missense_Mutation p.L580V 0.10 deleterious(0.02) possibly_damaging(0.577) TCGA-06-0650-01 13 25009059 25009059 C T PARP4 Missense_Mutation p.S1407N 0.11 tolerated(0.55) benign(0.001) TCGA-06-0650-01 15 26792999 26792999 C T GABRB3 Missense_Mutation p.V455M 0.09 tolerated(0.09) possibly_damaging(0.884) TCGA-06-0650-01 15 54305644 54305644 C T UNC13C Nonsense_Mutation p.R182* 0.04 TCGA-06-0650-01 16 85952286 85952286 G A IRF8 Missense_Mutation p.V289I 0.07 tolerated(0.7) possibly_damaging(0.47) TCGA-06-0650-01 17 10429979 10429979 G C MYH2 Missense_Mutation p.A1375G 0.11 deleterious(0) possibly_damaging(0.692) TCGA-06-0650-01 17 78447110 78447110 C T NPTX1 Missense_Mutation p.A263T 0.09 deleterious(0.03) benign(0.105) TCGA-06-0650-01 19 1465389 1465389 C T APC2 Missense_Mutation p.H697Y 0.18 possibly_damaging(0.703) TCGA-06-0650-01 19 40432968 40432968 C T FCGBP Missense_Mutation p.R434Q 0.18 benign(0.019) TCGA-06-0650-01 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.09 deleterious(0) probably_damaging(0.993) TCGA-06-0650-01 19 7810925 7810925 G A CD209 Missense_Mutation p.A76V 0.11 tolerated(0.24) benign(0.002) TCGA-06-0650-01 1 1249704 1249704 G C CPSF3L Silent p.L254L 0.29 TCGA-06-0650-01 1 144854177 144854177 C G PDE4DIP Missense_Mutation p.R2329S 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-0650-01 1 151820732 151820732 G A THEM5 Silent p.D167D 0.14 TCGA-06-0650-01 1 22915717 22915717 G A EPHA8 Intron 0.15 TCGA-06-0650-01 20 51870755 51870755 C T TSHZ2 Missense_Mutation p.T253M 0.12 deleterious(0) benign(0.413) TCGA-06-0650-01 2 38812883 38812884 CT G HNRNPLL Frame_Shift_Del p.S145Pfs*88 0.11 TCGA-06-0650-01 2 85051124 85051124 C A TRABD2A Missense_Mutation p.R380S 0.17 deleterious(0.02) benign(0.049) TCGA-06-0650-01 4 40440364 40440364 C T RBM47 Missense_Mutation p.V183I 0.05 tolerated(0.12) benign(0.372) TCGA-06-0650-01 4 70810660 70810660 C T CSN1S1 Silent p.S165S 0.18 TCGA-06-0650-01 4 79396642 79396642 C T FRAS1 Missense_Mutation p.T2578I 0.14 benign(0.035) TCGA-06-0650-01 5 148637907 148637907 G C ABLIM3 Missense_Mutation p.E664D 0.11 tolerated(0.07) benign(0.044) TCGA-06-0650-01 6 101037629 101037629 C T ASCC3 Missense_Mutation p.E1811K 0.11 tolerated(0.55) benign(0.027) TCGA-06-0650-01 6 160240368 160240368 G A PNLDC1 Missense_Mutation p.V495I 0.23 tolerated(0.3) benign(0.01) TCGA-06-0650-01 6 163956153 163956153 C G QKI Missense_Mutation p.P181R 0.13 deleterious(0.04) probably_damaging(0.999) TCGA-06-0650-01 6 31675363 31675363 C A LY6G6F Missense_Mutation p.L61M 0.07 deleterious(0.04) probably_damaging(0.961) TCGA-06-0650-01 6 85446758 85446758 G A TBX18 Missense_Mutation p.S490L 0.14 tolerated(0.34) probably_damaging(0.968) TCGA-06-0650-01 7 100678917 100678917 C T MUC17 Missense_Mutation p.P1407L 0.10 unknown(0) TCGA-06-0650-01 7 120386073 120386073 G T KCND2 Silent p.L569L 0.06 TCGA-06-0650-01 7 130038800 130038800 C T CEP41 Missense_Mutation p.G352S 0.10 tolerated_low_confidence(0.21) benign(0.002) TCGA-06-0650-01 7 55241677 55241677 G A EGFR Missense_Mutation p.E709K 0.02 deleterious(0.01) possibly_damaging(0.811) TCGA-06-0650-01 8 73848725 73848725 A G KCNB2 Missense_Mutation p.M379V 0.10 deleterious(0) probably_damaging(0.993) TCGA-06-0650-01 9 8485910 8485910 C T PTPRD Silent p.E969E 0.12 TCGA-06-0650-01 X 147063166 147063166 G A FMR1NB Missense_Mutation p.V82M 0.08 tolerated(0.11) possibly_damaging(0.791) TCGA-06-0650-01 X 153049494 153049494 G A SRPK3 Missense_Mutation p.A325T 0.17 tolerated(0.67) possibly_damaging(0.499) TCGA-06-0650-01 X 48463240 48463240 G A WDR13 Silent p.T426T 0.12 TCGA-06-0650-01 X 48847434 48847434 G A GRIPAP1 Silent p.T182T 0.14 TCGA-06-0650-01 X 51075751 51075751 C T NUDT10 5'UTR 0.20 TCGA-06-0650-01 X 9711677 9711677 G A GPR143 Missense_Mutation p.T232M 0.11 deleterious(0) probably_damaging(1) TCGA-06-0686-01 10 5995110 5995110 C A IL15RA Missense_Mutation p.W251L 0.81 tolerated(0.3) benign(0.003) TCGA-06-0686-01 10 76867879 76867879 C T DUSP13 Intron 0.80 TCGA-06-0686-01 11 1078153 1078153 G T MUC2 Missense_Mutation p.G174C 0.17 probably_damaging(1) TCGA-06-0686-01 11 45946107 45946107 A C GYLTL1B Silent p.L181L 0.33 TCGA-06-0686-01 11 5529867 5529867 A T UBQLN3 Missense_Mutation p.S308T 0.05 tolerated(0.26) benign(0.029) TCGA-06-0686-01 11 55419288 55419288 T A OR4S2 Missense_Mutation p.N303K 0.26 tolerated(1) benign(0) TCGA-06-0686-01 11 94192689 94192689 A T MRE11A Missense_Mutation p.V462E 0.06 deleterious(0) probably_damaging(0.996) TCGA-06-0686-01 11 94328516 94328516 G A PIWIL4 Missense_Mutation p.A398T 0.04 tolerated(0.09) benign(0.033) TCGA-06-0686-01 12 57849443 57849443 C G INHBE Missense_Mutation p.L42V 0.90 tolerated(0.1) benign(0.096) TCGA-06-0686-01 13 50589662 50589662 G C KCNRG Silent p.V11V 0.44 TCGA-06-0686-01 13 52715184 52715184 A G NEK3 Intron 0.47 TCGA-06-0686-01 14 100118755 100118755 C T HHIPL1 Silent p.S150S 0.07 TCGA-06-0686-01 14 101447346 101447346 C T SNORD114-20 RNA 0.33 TCGA-06-0686-01 14 25043567 25043567 G A CTSG Nonsense_Mutation p.R160* 0.44 TCGA-06-0686-01 14 95669370 95669370 C G CLMN Missense_Mutation p.E772D 0.07 tolerated(0.32) benign(0.009) TCGA-06-0686-01 15 25223605 25223605 C G SNRPN 3'UTR 0.07 TCGA-06-0686-01 15 74468444 74468444 G C ISLR Silent p.L415L 0.34 TCGA-06-0686-01 15 80845010 80845010 G T ARNT2 Missense_Mutation p.M328I 0.04 tolerated(0.41) benign(0.019) TCGA-06-0686-01 15 81428924 81428924 A G C15orf26 Missense_Mutation p.D76G 0.29 tolerated(0.51) benign(0.023) TCGA-06-0686-01 16 15841499 15841499 T C MYH11 Missense_Mutation p.E787G 0.09 probably_damaging(0.997) TCGA-06-0686-01 16 24582927 24582927 A C RBBP6 Missense_Mutation p.K1514Q 0.59 deleterious_low_confidence(0) unknown(0) TCGA-06-0686-01 16 3021597 3021597 C T PAQR4 Missense_Mutation p.S157L 0.41 deleterious(0) possibly_damaging(0.816) TCGA-06-0686-01 16 30774800 30774800 C A RNF40 Missense_Mutation p.A121E 0.06 tolerated(0.94) benign(0.002) TCGA-06-0686-01 16 71483233 71483233 C A ZNF23 Missense_Mutation p.S232I 0.32 deleterious(0) benign(0.179) TCGA-06-0686-01 17 61912798 61912798 G A SMARCD2 Nonsense_Mutation p.R233* 0.38 TCGA-06-0686-01 17 66928560 66928560 A T ABCA8 Silent p.T222T 0.41 TCGA-06-0686-01 17 80274786 80274786 C A CD7 Missense_Mutation p.G52W 0.42 deleterious(0) probably_damaging(1) TCGA-06-0686-01 19 15758065 15758065 G A CYP4F3 Silent p.T152T 0.47 TCGA-06-0686-01 19 21606980 21606980 C T ZNF493 Missense_Mutation p.H507Y 0.22 deleterious(0.02) probably_damaging(0.943) TCGA-06-0686-01 19 46268541 46268541 G A SIX5 3'UTR 0.50 TCGA-06-0686-01 19 51955606 51955606 C T SIGLEC8 3'UTR 0.43 TCGA-06-0686-01 19 9015333 9015333 C T MUC16 Missense_Mutation p.R12752K 0.33 possibly_damaging(0.822) TCGA-06-0686-01 1 115165651 115165651 G T DENND2C Missense_Mutation p.A338E 0.07 tolerated(0.33) benign(0.347) TCGA-06-0686-01 1 145827046 145827046 C T GPR89A 5'UTR 0.50 TCGA-06-0686-01 1 216595737 216595737 C T USH2A 5'UTR 0.45 TCGA-06-0686-01 1 222717477 222717477 G C HHIPL2 Missense_Mutation p.L126V 0.41 tolerated(0.36) benign(0.099) TCGA-06-0686-01 1 227935725 227935725 T A SNAP47 Missense_Mutation p.H141Q 0.11 deleterious(0) probably_damaging(0.999) TCGA-06-0686-01 1 247875632 247875632 C T OR6F1 Silent p.A142A 0.49 TCGA-06-0686-01 1 89448410 89448410 C T RBMXL1 Missense_Mutation p.S367N 0.41 tolerated(0.05) unknown(0) TCGA-06-0686-01 1 92946526 92946526 G A GFI1 Nonsense_Mutation p.R140* 0.66 TCGA-06-0686-01 20 44236737 44236737 G A WFDC9 3'UTR 0.25 TCGA-06-0686-01 21 31023612 31023612 C T GRIK1 Splice_Site p.X261_splice 0.07 TCGA-06-0686-01 21 44478273 44478273 G C CBS Missense_Mutation p.I483M 0.42 tolerated(1) benign(0.011) TCGA-06-0686-01 22 37709623 37709623 C T CYTH4 3'UTR 0.51 TCGA-06-0686-01 2 125660583 125660583 G A CNTNAP5 Silent p.A1186A 0.36 TCGA-06-0686-01 2 179438951 179438951 G A TTN Missense_Mutation p.R23970W 0.31 TCGA-06-0686-01 2 179569359 179569359 A C TTN Missense_Mutation p.F9947C 0.50 TCGA-06-0686-01 2 233272379 233272379 T C ALPPL2 Missense_Mutation p.F126L 0.34 tolerated(0.42) benign(0.017) TCGA-06-0686-01 2 3727521 3727521 G A ALLC Missense_Mutation p.V79I 0.42 tolerated(0.33) benign(0.002) TCGA-06-0686-01 2 47403634 47403634 C T CALM2 5'UTR 0.12 TCGA-06-0686-01 2 70680446 70680446 G A TGFA Nonsense_Mutation p.R127* 0.44 TCGA-06-0686-01 3 172165997 172165997 C T GHSR Silent p.S69S 0.44 TCGA-06-0686-01 3 46062372 46062372 G A XCR1 3'UTR 0.18 TCGA-06-0686-01 3 9982660 9982660 G A CRELD1 Missense_Mutation p.G196D 0.10 tolerated(0.35) benign(0.318) TCGA-06-0686-01 4 164272650 164272650 A G NPY5R Missense_Mutation p.I409V 0.46 tolerated(0.37) benign(0.036) TCGA-06-0686-01 4 189065255 189065255 C T TRIML1 Missense_Mutation p.T275M 0.40 deleterious(0.01) probably_damaging(0.944) TCGA-06-0686-01 4 48503638 48503638 A C FRYL Splice_Site p.X2864_splice 0.08 TCGA-06-0686-01 4 48537846 48537846 T C FRYL Splice_Site p.X2132_splice 0.21 TCGA-06-0686-01 5 11082954 11082954 G A CTNND2 Missense_Mutation p.S881L 0.43 deleterious(0) probably_damaging(0.968) TCGA-06-0686-01 5 122359634 122359634 G A PPIC Missense_Mutation p.S192L 0.36 tolerated(0.1) benign(0.137) TCGA-06-0686-01 5 127520072 127520072 A G SLC12A2 Missense_Mutation p.E1105G 0.34 deleterious(0.01) benign(0.06) TCGA-06-0686-01 5 149503887 149503887 G A PDGFRB Missense_Mutation p.S650L 0.35 deleterious(0) probably_damaging(1) TCGA-06-0686-01 5 150310862 150310862 T C ZNF300P1 RNA 0.13 TCGA-06-0686-01 5 161520964 161520964 A G GABRG2 Missense_Mutation p.K80E 0.38 deleterious(0) possibly_damaging(0.702) TCGA-06-0686-01 5 178415969 178415969 G A GRM6 Missense_Mutation p.L441F 0.06 tolerated(0.14) probably_damaging(0.942) TCGA-06-0686-01 5 77311333 77311333 A G AP3B1 Missense_Mutation p.I1011T 0.47 tolerated(1) benign(0.152) TCGA-06-0686-01 5 94956705 94956705 C T GPR150 Silent p.V242V 0.45 TCGA-06-0686-01 6 147124913 147124913 C T ADGB Intron 0.25 TCGA-06-0686-01 6 27420960 27420960 T G ZNF184 Silent p.I126I 0.28 TCGA-06-0686-01 6 29430405 29430405 G A OR2H1 Missense_Mutation p.V287I 0.25 tolerated(1) benign(0.001) TCGA-06-0686-01 7 142572331 142572331 G - TRPV6 Frame_Shift_Del p.F456Lfs*20 0.20 TCGA-06-0686-01 7 31862844 31862844 C T PDE1C Silent p.S535S 0.28 TCGA-06-0686-01 7 48035742 48035742 T A SUN3 Silent p.G193G 0.17 TCGA-06-0686-01 7 87704970 87704970 G A ADAM22 Missense_Mutation p.R118K 0.22 tolerated(0.39) benign(0.137) TCGA-06-0686-01 7 99564649 99564649 C G AZGP1 Missense_Mutation p.V292L 0.18 tolerated(0.11) benign(0.11) TCGA-06-0686-01 8 120569830 120569830 C T ENPP2 Silent p.K893K 0.40 TCGA-06-0686-01 8 121326187 121326187 G A COL14A1 Missense_Mutation p.R1491Q 0.08 tolerated(0.06) probably_damaging(0.997) TCGA-06-0686-01 8 139606377 139606377 C A COL22A1 Missense_Mutation p.G1500W 0.05 unknown(0) TCGA-06-0686-01 8 142221484 142221484 C T SLC45A4 3'UTR 0.37 TCGA-06-0686-01 8 61769309 61769309 G A CHD7 Silent p.S2490S 0.39 TCGA-06-0686-01 8 69621313 69621313 C T C8orf34 Silent p.F442F 0.59 TCGA-06-0686-01 8 73849588 73849588 G A KCNB2 Silent p.T666T 0.47 TCGA-06-0686-01 8 95900206 95900206 A C CCNE2 Missense_Mutation p.N183K 0.42 deleterious(0.04) benign(0.253) TCGA-06-0686-01 X 129162640 129162640 C T BCORL1 Missense_Mutation p.S1370F 0.06 possibly_damaging(0.786) TCGA-06-0686-01 X 50659431 50659431 C A BMP15 Missense_Mutation p.P335T 0.82 deleterious(0) possibly_damaging(0.836) TCGA-06-0743-01 10 108923743 108923743 G C SORCS1 Missense_Mutation p.S181C 0.75 deleterious(0) probably_damaging(0.94) TCGA-06-0743-01 10 112344031 112344031 G T SMC3 Missense_Mutation p.W394C 0.67 deleterious(0) probably_damaging(0.99) TCGA-06-0743-01 10 124399762 124399762 C T DMBT1 Silent p.D2254D 0.26 TCGA-06-0743-01 10 89692785 89692785 T C PTEN Missense_Mutation p.F90S 0.10 deleterious(0) probably_damaging(0.973) TCGA-06-0743-01 10 89720847 89720847 C - PTEN Frame_Shift_Del p.N334Tfs*10 0.30 TCGA-06-0743-01 11 100126601 100126601 C A CNTN5 Missense_Mutation p.N705K 0.44 tolerated(0.15) possibly_damaging(0.886) TCGA-06-0743-01 11 1267425 1267425 C T MUC5B Silent p.T3105T 0.13 TCGA-06-0743-01 11 1271196 1271196 C T MUC5B Silent p.T4362T 0.22 TCGA-06-0743-01 11 35454286 35454286 G A PAMR1 Missense_Mutation p.S611F 0.52 tolerated(0.27) benign(0.185) TCGA-06-0743-01 11 46880763 46880763 C T LRP4 Missense_Mutation p.R1830Q 0.04 tolerated_low_confidence(0.08) benign(0.062) TCGA-06-0743-01 11 67765211 67765211 C T UNC93B1 Silent p.P280P 0.50 TCGA-06-0743-01 12 111748245 111748245 G A CUX2 Silent p.L553L 0.40 TCGA-06-0743-01 12 131487822 131487822 C T GPR133 Silent p.T373T 0.46 TCGA-06-0743-01 12 15654855 15654855 C T PTPRO Silent p.Y321Y 0.29 TCGA-06-0743-01 12 1992139 1992139 G A CACNA2D4 Missense_Mutation p.A460V 0.56 deleterious(0) possibly_damaging(0.77) TCGA-06-0743-01 12 49416373 49416373 C G KMT2D Missense_Mutation p.Q5446H 0.03 unknown(0) TCGA-06-0743-01 12 49432216 49432216 G A KMT2D Missense_Mutation p.R2975C 0.39 probably_damaging(0.967) TCGA-06-0743-01 12 49935518 49935518 G A KCNH3 Missense_Mutation p.R139Q 0.03 tolerated(0.22) benign(0.056) TCGA-06-0743-01 12 94243772 94243772 C A CRADD Missense_Mutation p.H109N 0.42 tolerated(0.4) possibly_damaging(0.746) TCGA-06-0743-01 13 20039688 20039688 G A TPTE2 Nonsense_Mutation p.R177* 0.35 TCGA-06-0743-01 13 46287387 46287387 C T SPERT Missense_Mutation p.A76V 0.17 deleterious_low_confidence(0.01) benign(0.318) TCGA-06-0743-01 14 19553563 19553563 C T POTEG Silent p.H49H 0.12 TCGA-06-0743-01 14 31425409 31425409 C A STRN3 Nonsense_Mutation p.E108* 0.37 TCGA-06-0743-01 14 65543330 65543330 G A MAX Missense_Mutation p.P116L 0.33 tolerated_low_confidence(0.2) benign(0) TCGA-06-0743-01 15 52497360 52497360 G A MYO5C Intron 0.38 TCGA-06-0743-01 15 65114493 65114493 G A PIF1 Silent p.I263I 0.30 TCGA-06-0743-01 16 15029089 15029089 G A NPIPA1 5'Flank 0.14 TCGA-06-0743-01 16 74542799 74542799 G C GLG1 Missense_Mutation p.L166V 0.34 tolerated(0.11) possibly_damaging(0.749) TCGA-06-0743-01 16 88945844 88945844 C T CBFA2T3 Missense_Mutation p.R499Q 0.31 deleterious(0) probably_damaging(0.991) TCGA-06-0743-01 17 33904306 33904306 G C PEX12 Missense_Mutation p.S144C 0.54 deleterious(0.01) probably_damaging(0.963) TCGA-06-0743-01 17 3582918 3582918 C T P2RX5 Missense_Mutation p.G409R 0.27 deleterious_low_confidence(0) possibly_damaging(0.753) TCGA-06-0743-01 17 39593757 39593757 G A KRT38 Silent p.C426C 0.23 TCGA-06-0743-01 17 49708889 49708889 C T CA10 3'UTR 0.37 TCGA-06-0743-01 17 5238607 5238607 G A RABEP1 Missense_Mutation p.E166K 0.07 tolerated(0.17) possibly_damaging(0.771) TCGA-06-0743-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.33 deleterious(0) probably_damaging(1) TCGA-06-0743-01 18 14478237 14478237 G C CXADRP3 RNA 0.34 TCGA-06-0743-01 18 14478264 14478264 G C CXADRP3 RNA 0.42 TCGA-06-0743-01 18 57106776 57106776 T G CCBE1 Missense_Mutation p.K317T 0.37 deleterious(0.02) probably_damaging(0.999) TCGA-06-0743-01 18 77896514 77896514 T C ADNP2 Missense_Mutation p.I1073T 0.44 tolerated(0.15) benign(0.318) TCGA-06-0743-01 18 77896534 77896534 T C ADNP2 Missense_Mutation p.F1080L 0.50 tolerated(1) benign(0) TCGA-06-0743-01 19 13008135 13008135 A T GCDH Silent p.P325P 0.26 TCGA-06-0743-01 19 14876499 14876499 G A EMR2 Missense_Mutation p.P251L 0.09 tolerated(0.81) benign(0.001) TCGA-06-0743-01 19 15917903 15917903 A - OR10H1 Frame_Shift_Del p.N315Kfs*2 0.22 TCGA-06-0743-01 19 18327614 18327614 G A PDE4C Silent p.C474C 0.24 TCGA-06-0743-01 19 19653191 19653191 C T CILP2 Silent p.S200S 0.26 TCGA-06-0743-01 19 22154854 22154854 A T ZNF208 Silent p.I994I 0.26 TCGA-06-0743-01 19 3544583 3544583 G A MFSD12 Intron 0.30 TCGA-06-0743-01 19 36222840 36222840 C T KMT2B Silent p.D1823D 0.33 TCGA-06-0743-01 19 42873137 42873137 C T MEGF8 Silent p.T2141T 0.28 TCGA-06-0743-01 19 46195207 46195207 G A SNRPD2 5'UTR 0.28 TCGA-06-0743-01 19 53856851 53856851 G C ZNF845 3'UTR 0.31 TCGA-06-0743-01 19 53994332 53994332 G A ZNF813 Silent p.Q282Q 0.27 TCGA-06-0743-01 1 142713902 142713902 T A RP11-417J8.6 RNA 0.12 TCGA-06-0743-01 1 145584562 145584562 G A PIAS3 Missense_Mutation p.S510N 0.29 tolerated(0.16) benign(0.131) TCGA-06-0743-01 1 152286200 152286200 G T FLG Missense_Mutation p.H388N 0.36 probably_damaging(0.997) TCGA-06-0743-01 1 152323312 152323312 T G FLG2 Missense_Mutation p.Q2317P 0.45 benign(0.153) TCGA-06-0743-01 1 152538509 152538509 C T LCE3E Missense_Mutation p.R59H 0.37 tolerated_low_confidence(0.17) unknown(0) TCGA-06-0743-01 1 157805716 157805716 A G CD5L Silent p.S95S 0.09 TCGA-06-0743-01 1 161199442 161199442 G A TOMM40L 3'UTR 0.07 TCGA-06-0743-01 1 242253006 242253009 TAGA - PLD5 3'UTR 0.53 TCGA-06-0743-01 1 247320190 247320190 C T ZNF124 Missense_Mutation p.C183Y 0.32 tolerated(1) benign(0.003) TCGA-06-0743-01 1 249212440 249212440 T A PGBD2 Missense_Mutation p.W553R 0.18 tolerated(0.31) benign(0.142) TCGA-06-0743-01 1 3389688 3389688 G A ARHGEF16 Missense_Mutation p.E357K 0.34 tolerated(0.18) benign(0.244) TCGA-06-0743-01 1 45271573 45271573 G A PLK3 3'UTR 0.53 TCGA-06-0743-01 1 46500629 46500629 C T MAST2 Missense_Mutation p.L1430F 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-0743-01 20 13899669 13899669 T A SEL1L2 Missense_Mutation p.E128D 0.26 tolerated(0.61) benign(0.122) TCGA-06-0743-01 20 23731299 23731299 G A CST1 Missense_Mutation p.R69W 0.12 tolerated(0.06) benign(0.008) TCGA-06-0743-01 20 34206899 34206899 G A SPAG4 Missense_Mutation p.D258N 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-0743-01 20 39795447 39795447 T G PLCG1 Missense_Mutation p.M750R 0.33 deleterious(0) possibly_damaging(0.86) TCGA-06-0743-01 20 39795453 39795453 T A PLCG1 Missense_Mutation p.L752Q 0.32 deleterious(0) probably_damaging(1) TCGA-06-0743-01 20 5282783 5282783 C T PROKR2 Missense_Mutation p.R353H 0.30 tolerated(0.16) benign(0.004) TCGA-06-0743-01 20 629466 629466 G A SRXN1 Silent p.Y102Y 0.54 TCGA-06-0743-01 21 39795357 39795357 G A ERG Silent p.N128N 0.34 TCGA-06-0743-01 22 44966379 44966379 G A LINC00207 Splice_Site 0.39 TCGA-06-0743-01 2 113780342 113780342 C T IL36B Nonsense_Mutation p.W135* 0.41 TCGA-06-0743-01 2 158165160 158165160 G A GALNT5 Missense_Mutation p.V868I 0.40 tolerated(0.17) benign(0.001) TCGA-06-0743-01 2 175213069 175213069 A G CIR1 3'UTR 0.53 TCGA-06-0743-01 2 179553840 179553840 C T TTN Missense_Mutation p.V10679I 0.27 TCGA-06-0743-01 2 219892442 219892442 C T CCDC108 Missense_Mutation p.R714H 0.37 deleterious(0.04) benign(0.316) TCGA-06-0743-01 2 223066045 223066045 T G PAX3 Intron 0.41 TCGA-06-0743-01 2 238289831 238289831 C T COL6A3 Missense_Mutation p.G542S 0.44 probably_damaging(1) TCGA-06-0743-01 2 239161798 239161798 G A PER2 Missense_Mutation p.P956S 0.32 tolerated(0.12) benign(0.219) TCGA-06-0743-01 2 241631371 241631371 C T AQP12A Missense_Mutation p.T14I 0.31 tolerated(0.2) benign(0.026) TCGA-06-0743-01 2 89399518 89399518 G T IGKV1-16 Missense_Mutation p.P62Q 0.40 deleterious(0.01) possibly_damaging(0.895) TCGA-06-0743-01 3 111799958 111799958 T G TMPRSS7 3'UTR 0.43 TCGA-06-0743-01 3 174951943 174951943 C G NAALADL2 Missense_Mutation p.S256R 0.30 deleterious(0.03) possibly_damaging(0.453) TCGA-06-0743-01 3 183470006 183470006 C T YEATS2 Missense_Mutation p.S372L 0.43 tolerated(0.27) benign(0) TCGA-06-0743-01 3 184714255 184714255 C T VPS8 Missense_Mutation p.R1268C 0.37 deleterious(0.01) possibly_damaging(0.453) TCGA-06-0743-01 3 38050824 38050824 C A PLCD1 Missense_Mutation p.Q536H 0.43 tolerated(0.34) benign(0.056) TCGA-06-0743-01 3 38783979 38783979 T A SCN10A Missense_Mutation p.S637C 0.33 deleterious(0) benign(0.353) TCGA-06-0743-01 3 52842629 52842629 G A ITIH3 Missense_Mutation p.V869I 0.35 tolerated(0.57) benign(0.032) TCGA-06-0743-01 4 105412449 105412449 G A CXXC4 Missense_Mutation p.H171Y 0.37 deleterious_low_confidence(0) possibly_damaging(0.549) TCGA-06-0743-01 4 39116882 39116882 G A KLHL5 Missense_Mutation p.G715R 0.38 deleterious(0) probably_damaging(1) TCGA-06-0743-01 4 71527860 71527860 C T IGJ Missense_Mutation p.R46H 0.43 deleterious(0.01) possibly_damaging(0.591) TCGA-06-0743-01 4 956607 956607 C T DGKQ Missense_Mutation p.R663Q 0.21 tolerated(0.2) benign(0.028) TCGA-06-0743-01 5 140215715 140215715 C T PCDHA7 Missense_Mutation p.R583W 0.15 tolerated_low_confidence(0.05) benign(0.149) TCGA-06-0743-01 5 151784353 151784353 G A NMUR2 Missense_Mutation p.R108C 0.36 tolerated(0.15) benign(0.011) TCGA-06-0743-01 5 156349123 156349123 C T TIMD4 Silent p.A333A 0.36 TCGA-06-0743-01 5 178199626 178199626 G A AACSP1 RNA 0.33 TCGA-06-0743-01 5 19747216 19747216 G T CDH18 Missense_Mutation p.Q120K 0.36 tolerated(0.25) benign(0.001) TCGA-06-0743-01 5 23523414 23523414 A G PRDM9 Silent p.R299R 0.36 TCGA-06-0743-01 5 33615934 33615934 T C ADAMTS12 Missense_Mutation p.Q796R 0.41 deleterious(0) probably_damaging(0.967) TCGA-06-0743-01 5 56168509 56168509 C T MAP3K1 Missense_Mutation p.P489S 0.10 deleterious(0) probably_damaging(0.974) TCGA-06-0743-01 5 70308329 70308329 G A NAIP Silent p.Y138Y 0.22 TCGA-06-0743-01 5 94749771 94749771 C T FAM81B Silent p.D138D 0.45 TCGA-06-0743-01 6 16143302 16143302 A C MYLIP Missense_Mutation p.E172D 0.51 deleterious(0.02) probably_damaging(0.945) TCGA-06-0743-01 6 43267438 43267438 G A SLC22A7 Missense_Mutation p.V193I 0.42 tolerated(0.15) benign(0.034) TCGA-06-0743-01 6 44270876 44270876 C - AARS2 Frame_Shift_Del p.V728Cfs*33 0.19 TCGA-06-0743-01 6 46806843 46806843 C T MEP1A Silent p.I737I 0.43 TCGA-06-0743-01 6 74073290 74073290 G A KHDC3L Missense_Mutation p.A121T 0.41 tolerated(0.33) benign(0.158) TCGA-06-0743-01 7 112112859 112112859 C T IFRD1 Silent p.P403P 0.16 TCGA-06-0743-01 7 144228215 144228215 C T TPK1 Intron 0.50 TCGA-06-0743-01 7 150324938 150324938 C T GIMAP6 Missense_Mutation p.E250K 0.27 tolerated(0.07) benign(0.15) TCGA-06-0743-01 7 150558161 150558161 C T AOC1 Missense_Mutation p.S707F 0.35 deleterious(0) probably_damaging(0.931) TCGA-06-0743-01 7 150841145 150841145 C T AGAP3 3'UTR 0.41 TCGA-06-0743-01 7 20198221 20198221 G A MACC1 Missense_Mutation p.A588V 0.11 tolerated(0.45) probably_damaging(0.968) TCGA-06-0743-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.25 deleterious(0.02) probably_damaging(0.974) TCGA-06-0743-01 7 94056341 94056341 G C COL1A2 Missense_Mutation p.A1043P 0.26 unknown(0) TCGA-06-0743-01 7 98254262 98254262 G A NPTX2 Silent p.A224A 0.25 TCGA-06-0743-01 7 98528341 98528341 G T TRRAP Missense_Mutation p.G1160V 0.25 probably_damaging(1) TCGA-06-0743-01 8 100568723 100568723 C T VPS13B Silent p.I1622I 0.35 TCGA-06-0743-01 8 113702122 113702122 C T CSMD3 Nonsense_Mutation p.W710* 0.46 TCGA-06-0743-01 8 40554861 40554861 G T ZMAT4 Missense_Mutation p.F84L 0.41 deleterious(0.05) probably_damaging(0.996) TCGA-06-0743-01 9 114462255 114462255 G A C9orf84 Silent p.N990N 0.37 TCGA-06-0743-01 9 19360386 19360386 A G DENND4C Missense_Mutation p.I1720V 0.06 deleterious(0.02) benign(0.163) TCGA-06-0743-01 X 105450617 105450617 T - MUM1L1 Frame_Shift_Del p.F398Lfs*12 0.45 TCGA-06-0743-01 X 115304521 115304521 C T AGTR2 Missense_Mutation p.R330C 0.75 tolerated(0.2) possibly_damaging(0.614) TCGA-06-0743-01 X 140966989 140966989 G C MAGEC3 Missense_Mutation p.G96A 0.16 deleterious_low_confidence(0.01) benign(0) TCGA-06-0743-01 X 153588445 153588445 C T FLNA Missense_Mutation p.V1240M 0.20 deleterious(0) probably_damaging(0.988) TCGA-06-0743-01 X 1584686 1584686 C T P2RY8 Missense_Mutation p.V256M 0.48 deleterious(0.02) probably_damaging(0.921) TCGA-06-0743-01 X 55650462 55650462 C T FOXR2 Silent p.N106N 1.00 TCGA-06-0743-01 Y 5605460 5605460 G T PCDH11Y Missense_Mutation p.S1167I 0.68 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-06-0744-01 11 113860380 113860380 C T HTR3A Silent p.R482R 0.34 TCGA-06-0744-01 11 11398782 11398782 G A GALNT18 Silent p.Y308Y 0.37 TCGA-06-0744-01 11 118984640 118984640 G A C2CD2L Missense_Mutation p.R523Q 0.50 deleterious(0) benign(0.392) TCGA-06-0744-01 11 123676407 123676407 G A OR6M1 Silent p.Y217Y 0.38 TCGA-06-0744-01 11 123894514 123894514 C T OR10G9 Silent p.D265D 0.40 TCGA-06-0744-01 11 209578 209578 G A RIC8A Missense_Mutation p.E102K 0.45 tolerated(0.12) benign(0.027) TCGA-06-0744-01 11 48510526 48510526 T C OR4A47 Missense_Mutation p.L61P 0.43 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-06-0744-01 11 55703856 55703856 G C OR5I1 Missense_Mutation p.N7K 0.65 deleterious(0) benign(0.197) TCGA-06-0744-01 11 62767306 62767306 C T SLC22A8 Missense_Mutation p.R149H 0.41 deleterious(0) probably_damaging(1) TCGA-06-0744-01 12 10374540 10374540 C G GABARAPL1 3'UTR 0.62 TCGA-06-0744-01 12 3388164 3388164 A G TSPAN9 Missense_Mutation p.I88V 0.41 tolerated(0.67) benign(0.007) TCGA-06-0744-01 14 103440447 103440447 G A CDC42BPB Missense_Mutation p.A516V 0.47 tolerated(0.25) benign(0.001) TCGA-06-0744-01 14 105409046 105409046 G A AHNAK2 Missense_Mutation p.P4248S 0.42 benign(0.213) TCGA-06-0744-01 14 107199371 107199371 C A IGHV3-72 Missense_Mutation p.W7C 0.35 tolerated_low_confidence(0.14) probably_damaging(0.999) TCGA-06-0744-01 14 22471362 22471362 C T TRAV18 5'UTR 0.32 TCGA-06-0744-01 14 23511816 23511816 G A PSMB11 Missense_Mutation p.A128T 0.48 deleterious(0.05) benign(0.073) TCGA-06-0744-01 14 42360832 42360832 G A LRFN5 Missense_Mutation p.V589M 0.40 tolerated(0.22) benign(0.003) TCGA-06-0744-01 15 22383070 22383070 G A OR4N4 Missense_Mutation p.V200I 0.31 tolerated(0.53) benign(0.232) TCGA-06-0744-01 15 99672043 99672043 C A SYNM Missense_Mutation p.Q1159K 0.37 tolerated(0.06) benign(0.007) TCGA-06-0744-01 16 23718180 23718180 G A ERN2 Missense_Mutation p.R176W 0.47 deleterious(0) probably_damaging(0.986) TCGA-06-0744-01 17 18566092 18566093 - T ZNF286B Frame_Shift_Ins p.P243Tfs*3 0.26 TCGA-06-0744-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.48 deleterious(0) probably_damaging(1) TCGA-06-0744-01 18 43418924 43418924 C T SIGLEC15 Silent p.S246S 0.31 TCGA-06-0744-01 18 44635107 44635110 TAAG - HDHD2 Frame_Shift_Del p.Y241* 0.44 TCGA-06-0744-01 18 61307011 61307011 C T SERPINB4 Splice_Site p.X157_splice 0.39 TCGA-06-0744-01 18 7037694 7037694 C T LAMA1 Silent p.P540P 0.49 TCGA-06-0744-01 19 21606942 21606942 G A ZNF493 Missense_Mutation p.C494Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-0744-01 19 46914965 46914965 C T CCDC8 Missense_Mutation p.R368K 0.21 benign(0.06) TCGA-06-0744-01 19 58863692 58863692 G A A1BG Silent p.G190G 0.33 TCGA-06-0744-01 19 7806069 7806069 G A CD209 3'UTR 0.28 TCGA-06-0744-01 1 19062474 19062474 G T PAX7 Nonsense_Mutation p.G502* 0.07 TCGA-06-0744-01 1 235345495 235345495 A T ARID4B Missense_Mutation p.D913E 0.48 tolerated_low_confidence(0.89) probably_damaging(0.99) TCGA-06-0744-01 20 61978100 61978100 C T CHRNA4 Missense_Mutation p.G625D 0.40 deleterious(0.01) possibly_damaging(0.904) TCGA-06-0744-01 22 32589175 32589175 G A RFPL2 Silent p.D90D 0.79 TCGA-06-0744-01 2 108488800 108488800 G A RGPD4 Missense_Mutation p.R1447H 0.34 deleterious(0) probably_damaging(0.987) TCGA-06-0744-01 2 108489249 108489249 G A RGPD4 Missense_Mutation p.V1597M 0.05 tolerated_low_confidence(0.07) benign(0.019) TCGA-06-0744-01 2 179412923 179412923 G A TTN Missense_Mutation p.R31144W 0.45 TCGA-06-0744-01 2 220309407 220309407 G A SPEG Missense_Mutation p.V141M 0.43 benign(0.332) TCGA-06-0744-01 2 225706579 225706579 T C DOCK10 Missense_Mutation p.Q868R 0.41 deleterious(0) possibly_damaging(0.493) TCGA-06-0744-01 2 234368926 234368926 G A DGKD Missense_Mutation p.M972I 0.43 tolerated(0.49) benign(0) TCGA-06-0744-01 2 234775617 234775617 G A MSL3P1 RNA 0.44 TCGA-06-0744-01 2 71651040 71651040 G A ZNF638 Missense_Mutation p.G1466R 0.48 deleterious(0) possibly_damaging(0.873) TCGA-06-0744-01 2 74042973 74042973 C T C2orf78 Silent p.S541S 0.51 TCGA-06-0744-01 2 85051153 85051153 G A TRABD2A Missense_Mutation p.R371W 0.38 deleterious(0.02) possibly_damaging(0.606) TCGA-06-0744-01 3 100053585 100053595 CGGATCTCCAG - NIT2 5'UTR 0.38 TCGA-06-0744-01 3 126219669 126219669 G C UROC1 Missense_Mutation p.D398E 0.39 tolerated(0.32) possibly_damaging(0.672) TCGA-06-0744-01 3 142280158 142280158 C T ATR Missense_Mutation p.G426R 0.35 tolerated(0.07) benign(0.19) TCGA-06-0744-01 3 186457116 186457116 G A KNG1 Splice_Site p.X347_splice 0.42 TCGA-06-0744-01 3 51863721 51863721 G A IQCF3 Missense_Mutation p.R20Q 0.47 tolerated(0.67) benign(0) TCGA-06-0744-01 3 87325559 87325559 G A POU1F1 Silent p.D18D 0.54 TCGA-06-0744-01 4 104079809 104079809 C T CENPE Missense_Mutation p.D946N 0.42 probably_damaging(0.972) TCGA-06-0744-01 4 122735086 122735086 G C EXOSC9 Missense_Mutation p.W347S 0.44 deleterious(0) probably_damaging(1) TCGA-06-0744-01 4 145038021 145038021 G A GYPA Missense_Mutation p.R115C 0.35 tolerated(0.13) benign(0.02) TCGA-06-0744-01 4 152201013 152201013 C A PRSS48 Missense_Mutation p.P40T 0.42 deleterious(0) probably_damaging(1) TCGA-06-0744-01 4 175897195 175897195 C A ADAM29 Nonsense_Mutation p.C173* 0.42 TCGA-06-0744-01 4 186381243 186381243 G A CCDC110 Silent p.S166S 0.34 TCGA-06-0744-01 4 23797333 23797333 G T PPARGC1A 3'UTR 0.19 TCGA-06-0744-01 4 6107274 6107274 G A JAKMIP1 Missense_Mutation p.R184C 0.14 deleterious(0.03) probably_damaging(0.999) TCGA-06-0744-01 5 140222780 140222780 G T PCDHA8 Missense_Mutation p.G625V 0.54 deleterious_low_confidence(0) possibly_damaging(0.87) TCGA-06-0744-01 5 140554382 140554382 G A PCDHB7 Missense_Mutation p.A656T 0.29 deleterious_low_confidence(0.01) benign(0.15) TCGA-06-0744-01 5 151771915 151771915 C T NMUR2 Missense_Mutation p.R362Q 0.73 tolerated(0.49) benign(0.003) TCGA-06-0744-01 5 33576992 33576992 C T ADAMTS12 Missense_Mutation p.A1047T 0.45 tolerated(0.69) benign(0.002) TCGA-06-0744-01 5 33684033 33684033 G A ADAMTS12 Silent p.A254A 0.43 TCGA-06-0744-01 5 38924670 38924670 C T OSMR Missense_Mutation p.P673S 0.30 tolerated(0.32) benign(0.017) TCGA-06-0744-01 5 79035031 79035031 G A CMYA5 Silent p.L3481L 0.54 TCGA-06-0744-01 6 30114887 30114887 G A TRIM40 Silent p.A160A 0.46 TCGA-06-0744-01 6 30127012 30127012 T C TRIM10 Missense_Mutation p.H147R 0.42 tolerated(0.41) benign(0.001) TCGA-06-0744-01 6 47681719 47681719 C A GPR115 Missense_Mutation p.H246Q 0.49 tolerated(0.5) benign(0.157) TCGA-06-0744-01 6 83830474 83830474 C T DOPEY1 Missense_Mutation p.R355C 0.35 deleterious(0) probably_damaging(0.999) TCGA-06-0744-01 7 100675948 100675948 T C MUC17 Silent p.P417P 0.27 TCGA-06-0744-01 7 143884194 143884194 A T ARHGEF35 Missense_Mutation p.L428H 0.24 tolerated(0.41) benign(0.001) TCGA-06-0744-01 7 148951521 148951521 G A ZNF212 3'UTR 0.21 TCGA-06-0744-01 7 37253052 37253052 C T ELMO1 Missense_Mutation p.R281Q 0.67 tolerated(0.32) probably_damaging(0.999) TCGA-06-0744-01 7 37298915 37298915 G A ELMO1 Missense_Mutation p.S95L 0.28 tolerated(0.21) benign(0.043) TCGA-06-0744-01 7 47698942 47698942 G A C7orf65 3'UTR 0.37 TCGA-06-0744-01 7 70881029 70881029 C T WBSCR17 Silent p.H248H 0.24 TCGA-06-0744-01 7 72721634 72721634 G A NSUN5 Missense_Mutation p.R113W 0.23 deleterious(0) possibly_damaging(0.836) TCGA-06-0744-01 7 92734204 92734204 C A SAMD9 Missense_Mutation p.D403Y 0.22 deleterious(0) benign(0.411) TCGA-06-0744-01 7 94931534 94931534 T A PON1 Missense_Mutation p.N298Y 0.28 tolerated(0.06) benign(0.386) TCGA-06-0744-01 8 105001597 105001597 C T RIMS2 Nonsense_Mutation p.R998* 0.44 TCGA-06-0744-01 8 144358513 144358513 T G GLI4 Missense_Mutation p.S224A 0.29 tolerated(0.11) benign(0.388) TCGA-06-0744-01 8 144940380 144940380 C T EPPK1 Missense_Mutation p.V2348I 0.05 benign(0.032) TCGA-06-0744-01 8 25167952 25167952 G A DOCK5 Missense_Mutation p.G408S 0.36 deleterious(0.01) probably_damaging(1) TCGA-06-0744-01 8 37730005 37730005 G A RAB11FIP1 Missense_Mutation p.A772V 0.48 tolerated(0.5) benign(0.001) TCGA-06-0744-01 8 97797551 97797551 T A CPQ Silent p.P142P 0.45 TCGA-06-0744-01 9 100672419 100672419 C A C9orf156 Missense_Mutation p.V297F 0.44 tolerated(0.46) benign(0.006) TCGA-06-0744-01 9 101530447 101530447 C T ANKS6 Silent p.R686R 0.37 TCGA-06-0744-01 9 104499635 104499635 G A GRIN3A Silent p.L209L 0.77 TCGA-06-0744-01 9 131761900 131761900 C T NUP188 Intron 0.63 TCGA-06-0744-01 9 138671275 138671275 G A KCNT1 Missense_Mutation p.A934T 0.06 deleterious(0.01) benign(0.221) TCGA-06-0744-01 9 32630560 32630560 G C TAF1L Missense_Mutation p.T1673R 0.04 tolerated_low_confidence(0.05) benign(0.183) TCGA-06-0744-01 X 105881005 105881005 C T CXorf57 Missense_Mutation p.P475L 0.82 deleterious(0.03) benign(0.089) TCGA-06-0745-01 10 123683779 123683779 A - ATE1 Splice_Site p.X57_splice 0.43 TCGA-06-0745-01 10 64574066 64574066 C G EGR2 Missense_Mutation p.G111A 0.64 deleterious(0.02) probably_damaging(0.995) TCGA-06-0745-01 11 123811134 123811134 G A OR4D5 Missense_Mutation p.V271I 0.43 tolerated(0.33) benign(0.01) TCGA-06-0745-01 11 28058009 28058009 C T KIF18A Silent p.P717P 0.34 TCGA-06-0745-01 11 3681476 3681476 A T ART1 Missense_Mutation p.I243F 0.34 deleterious(0) probably_damaging(0.999) TCGA-06-0745-01 11 62298733 62298733 G A AHNAK Silent p.G1052G 0.46 TCGA-06-0745-01 12 75601564 75601564 G A KCNC2 Missense_Mutation p.A67V 0.32 tolerated_low_confidence(0.36) benign(0.005) TCGA-06-0745-01 13 77835447 77835447 A G MYCBP2 Missense_Mutation p.W533R 0.33 possibly_damaging(0.653) TCGA-06-0745-01 14 106963079 106963079 C T IGHV1-45 Missense_Mutation p.G68E 0.59 deleterious(0.01) probably_damaging(0.928) TCGA-06-0745-01 14 33290671 33290671 G C AKAP6 Missense_Mutation p.E1218Q 0.67 deleterious(0) probably_damaging(0.997) TCGA-06-0745-01 14 91937214 91937214 G C SMEK1 Missense_Mutation p.L530V 0.29 tolerated(0.13) probably_damaging(0.953) TCGA-06-0745-01 15 100340415 100340415 C T DNM1P46 RNA 0.36 TCGA-06-0745-01 15 31294188 31294188 G T TRPM1 Nonsense_Mutation p.S1589* 0.70 TCGA-06-0745-01 15 42178160 42178160 G C SPTBN5 Missense_Mutation p.F431L 0.38 probably_damaging(0.999) TCGA-06-0745-01 16 10992859 10992859 C T CIITA Missense_Mutation p.P146S 0.31 tolerated(0.49) benign(0.01) TCGA-06-0745-01 16 27483187 27483187 C G GTF3C1 Missense_Mutation p.E1470Q 0.32 tolerated(0.26) benign(0.358) TCGA-06-0745-01 16 3254556 3254556 G A OR1F1 Missense_Mutation p.V104I 0.35 deleterious(0.04) benign(0.004) TCGA-06-0745-01 16 53190481 53190481 T A CHD9 Missense_Mutation p.H160Q 0.47 benign(0.018) TCGA-06-0745-01 16 88779258 88779258 C A CTU2 Missense_Mutation p.L228M 0.32 deleterious(0.01) possibly_damaging(0.833) TCGA-06-0745-01 17 38245688 38245688 C A THRA Intron 0.41 TCGA-06-0745-01 17 73733432 73733432 C T ITGB4 Missense_Mutation p.R674W 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-0745-01 18 60985794 60985796 CCA - BCL2 In_Frame_Del p.V35del 0.43 TCGA-06-0745-01 19 53995161 53995161 G A ZNF813 Missense_Mutation p.V559I 0.72 deleterious(0.02) benign(0.055) TCGA-06-0745-01 19 6714208 6714208 G C C3 Silent p.V217V 0.33 TCGA-06-0745-01 19 9072189 9072189 C T MUC16 Missense_Mutation p.R5086H 0.30 unknown(0) TCGA-06-0745-01 1 109177822 109177822 T A FAM102B 3'UTR 0.45 TCGA-06-0745-01 1 11596726 11596726 G T PTCHD2 Missense_Mutation p.A1388S 0.81 tolerated(1) benign(0) TCGA-06-0745-01 1 151377174 151377174 T C POGZ 3'UTR 0.57 TCGA-06-0745-01 1 182354715 182354715 T A GLUL Intron 0.45 TCGA-06-0745-01 1 237948008 237948008 C G RYR2 Silent p.A4332A 0.33 TCGA-06-0745-01 1 246027126 246027126 T G SMYD3 Missense_Mutation p.K292N 0.41 tolerated(0.11) benign(0.003) TCGA-06-0745-01 1 75198854 75198854 C A CRYZ 5'UTR 0.62 TCGA-06-0745-01 20 61596986 61596986 G A SLC17A9 Missense_Mutation p.V324I 0.25 tolerated(0.53) benign(0.016) TCGA-06-0745-01 22 24040417 24040417 G T RGL4 Nonsense_Mutation p.E427* 0.34 TCGA-06-0745-01 22 29130518 29130518 C T CHEK2 Silent p.E64E 0.41 TCGA-06-0745-01 22 29130710 29130710 C G CHEK2 5'UTR 0.32 TCGA-06-0745-01 22 50901747 50901747 C G SBF1 Missense_Mutation p.D622H 0.44 deleterious(0) probably_damaging(0.989) TCGA-06-0745-01 2 136570155 136570155 G A LCT Silent p.N693N 0.35 TCGA-06-0745-01 2 1812887 1812887 C T MYT1L Missense_Mutation p.G1043R 0.43 deleterious(0) possibly_damaging(0.838) TCGA-06-0745-01 2 38179186 38179186 A T RMDN2 Silent p.P276P 0.41 TCGA-06-0745-01 3 111602919 111602919 A G PHLDB2 5'UTR 0.67 TCGA-06-0745-01 3 120122088 120122088 C T FSTL1 Splice_Site p.X232_splice 0.38 TCGA-06-0745-01 3 98072858 98072858 G A OR5K4 Missense_Mutation p.R54H 0.63 tolerated(1) benign(0.004) TCGA-06-0745-01 4 70810645 70810645 T C CSN1S1 Silent p.P160P 0.44 TCGA-06-0745-01 4 83785658 83785658 G A SEC31A Nonsense_Mutation p.Q431* 0.36 TCGA-06-0745-01 5 140481632 140481632 G A PCDHB3 Missense_Mutation p.A467T 0.43 deleterious_low_confidence(0) benign(0.287) TCGA-06-0745-01 5 140595599 140595599 C T PCDHB13 Missense_Mutation p.A635V 0.31 tolerated_low_confidence(0.09) benign(0.134) TCGA-06-0745-01 5 66416900 66416900 C T MAST4 Missense_Mutation p.T572M 0.44 possibly_damaging(0.805) TCGA-06-0745-01 5 89705554 89705554 G C CETN3 5'UTR 0.54 TCGA-06-0745-01 5 89981650 89981650 A G GPR98 Missense_Mutation p.I2110V 0.42 possibly_damaging(0.768) TCGA-06-0745-01 6 158342573 158342573 A T SNX9 Missense_Mutation p.E320D 0.41 tolerated(0.05) probably_damaging(0.95) TCGA-06-0745-01 6 83921549 83921549 G A ME1 3'UTR 0.35 TCGA-06-0745-01 7 107557761 107557761 C T DLD Missense_Mutation p.H364Y 0.23 deleterious(0) probably_damaging(1) TCGA-06-0745-01 7 115582025 115582025 T C TFEC Silent p.E195E 0.11 TCGA-06-0745-01 7 2281798 2281798 C T FTSJ2 Missense_Mutation p.G3R 0.28 tolerated_low_confidence(0.93) benign(0.002) TCGA-06-0745-01 7 7412882 7412882 G A COL28A1 Silent p.N885N 0.24 TCGA-06-0745-01 7 87190619 87190619 T A ABCB1 Missense_Mutation p.T263S 0.06 deleterious(0.01) possibly_damaging(0.821) TCGA-06-0745-01 8 139164211 139164211 G C FAM135B Missense_Mutation p.A836G 0.41 tolerated(0.16) benign(0.003) TCGA-06-0745-01 8 2092880 2092880 C T MYOM2 Missense_Mutation p.A1458V 0.17 deleterious_low_confidence(0.02) benign(0.243) TCGA-06-0745-01 8 53573548 53573548 T C RB1CC1 Missense_Mutation p.K522R 0.21 tolerated(0.33) benign(0.004) TCGA-06-0745-01 8 69381052 69381052 C T C8orf34 Nonsense_Mutation p.R245* 0.45 TCGA-06-0745-01 9 133768879 133768879 G A QRFP Missense_Mutation p.A116V 0.43 deleterious(0.04) possibly_damaging(0.524) TCGA-06-0745-01 9 96294445 96294445 C A FAM120A Silent p.I581I 0.26 TCGA-06-0745-01 X 3239887 3239887 C T MXRA5 Missense_Mutation p.R1280K 0.75 tolerated(0.29) benign(0.053) TCGA-06-0745-01 X 85218739 85218739 C A CHM Missense_Mutation p.K211N 0.83 deleterious(0.02) possibly_damaging(0.812) TCGA-06-0745-01 X 91090731 91090731 A T PCDH11X Silent p.R76R 0.78 TCGA-06-0747-01 10 131506185 131506185 C T MGMT Missense_Mutation p.A82V 0.85 tolerated(0.17) benign(0.16) TCGA-06-0747-01 10 54531391 54531391 G T MBL2 Missense_Mutation p.S2Y 0.61 tolerated(0.41) unknown(0) TCGA-06-0747-01 10 55839114 55839114 C G PCDH15 Missense_Mutation p.A690P 0.82 deleterious(0) probably_damaging(1) TCGA-06-0747-01 11 14853295 14853295 G A PDE3B Missense_Mutation p.G689E 0.51 deleterious(0.03) probably_damaging(1) TCGA-06-0747-01 11 55798090 55798090 T G OR5AS1 Missense_Mutation p.L66V 0.44 deleterious(0) probably_damaging(0.996) TCGA-06-0747-01 11 56229973 56229973 G C OR5M9 Missense_Mutation p.A302G 0.40 tolerated(0.09) benign(0.003) TCGA-06-0747-01 11 58949878 58949878 A G DTX4 Missense_Mutation p.N293S 0.44 tolerated(0.87) benign(0) TCGA-06-0747-01 11 65402835 65402835 G A PCNXL3 Silent p.A1700A 0.45 TCGA-06-0747-01 12 2716205 2716205 C T CACNA1C Missense_Mutation p.R1109C 0.52 deleterious(0) probably_damaging(0.999) TCGA-06-0747-01 12 40001468 40001468 G A ABCD2 Missense_Mutation p.T390I 0.44 tolerated(0.05) benign(0.034) TCGA-06-0747-01 13 113854813 113854813 G A PCID2 Silent p.D18D 0.40 TCGA-06-0747-01 13 61985826 61985826 G A PCDH20 Silent p.G802G 0.42 TCGA-06-0747-01 14 105404844 105404844 C T AHNAK2 Nonsense_Mutation p.W5648* 0.57 TCGA-06-0747-01 15 49054660 49054660 T G CEP152 Silent p.I830I 0.46 TCGA-06-0747-01 16 70913364 70913364 C T HYDIN Missense_Mutation p.V3465M 0.28 benign(0.212) TCGA-06-0747-01 17 42330498 42330498 C T SLC4A1 Missense_Mutation p.A767T 0.14 deleterious(0.01) possibly_damaging(0.671) TCGA-06-0747-01 17 73914257 73914257 G A FBF1 Silent p.A729A 0.49 TCGA-06-0747-01 18 21338466 21338466 G A LAMA3 Missense_Mutation p.E352K 0.40 benign(0.394) TCGA-06-0747-01 18 23873445 23873445 A G TAF4B Silent p.A594A 0.39 TCGA-06-0747-01 18 5489008 5489008 G A EPB41L3 Missense_Mutation p.R59W 0.43 deleterious(0) possibly_damaging(0.556) TCGA-06-0747-01 19 12864093 12864093 C T BEST2 Nonsense_Mutation p.Q58* 0.28 TCGA-06-0747-01 19 14951796 14951796 C A OR7A10 Missense_Mutation p.K298N 0.23 deleterious_low_confidence(0.02) benign(0.01) TCGA-06-0747-01 19 17838511 17838511 G A MAP1S Missense_Mutation p.R773Q 0.27 tolerated(0.68) possibly_damaging(0.811) TCGA-06-0747-01 19 42218934 42218934 G A CEACAM5 Missense_Mutation p.V157M 0.41 tolerated(0.18) possibly_damaging(0.9) TCGA-06-0747-01 19 49253828 49253828 G A FUT1 Silent p.G237G 0.45 TCGA-06-0747-01 19 54314476 54314476 C T NLRP12 Missense_Mutation p.R146H 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-0747-01 19 55742009 55742009 G T PPP6R1 Missense_Mutation p.P872T 0.45 tolerated_low_confidence(0.31) benign(0.001) TCGA-06-0747-01 1 11217231 11217231 A G MTOR Missense_Mutation p.C1483R 0.04 deleterious(0) probably_damaging(0.994) TCGA-06-0747-01 1 160106156 160106156 G C ATP1A2 Missense_Mutation p.Q853H 0.36 tolerated(0.13) benign(0.266) TCGA-06-0747-01 1 165738119 165738119 T C TMCO1 Missense_Mutation p.D8G 0.50 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-06-0747-01 1 167064116 167064116 G A DUSP27 Silent p.E10E 0.43 TCGA-06-0747-01 1 167095182 167095182 C T DUSP27 Missense_Mutation p.R272W 0.39 deleterious(0) probably_damaging(1) TCGA-06-0747-01 1 21031072 21031072 G A KIF17 Missense_Mutation p.R331W 0.35 deleterious(0) probably_damaging(1) TCGA-06-0747-01 1 247587535 247587535 G T NLRP3 Missense_Mutation p.V264L 0.48 tolerated(0.4) benign(0.015) TCGA-06-0747-01 1 47333659 47333659 C T CYP4Z2P RNA 0.46 TCGA-06-0747-01 1 76397980 76397980 T C ASB17 5'UTR 0.49 TCGA-06-0747-01 1 79412033 79412033 C G ELTD1 Missense_Mutation p.C84S 0.51 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-0747-01 1 94543367 94543367 A T ABCA4 Missense_Mutation p.I478N 0.49 deleterious(0) possibly_damaging(0.602) TCGA-06-0747-01 20 35060659 35060659 G A DLGAP4 Missense_Mutation p.R180Q 0.34 deleterious(0.03) probably_damaging(0.998) TCGA-06-0747-01 20 50133367 50133367 G A NFATC2 Nonsense_Mutation p.R430* 0.22 TCGA-06-0747-01 20 5843987 5843987 G T C20orf196 Missense_Mutation p.D166Y 0.28 deleterious(0) probably_damaging(0.989) TCGA-06-0747-01 20 61943349 61943349 G A COL20A1 Missense_Mutation p.R582K 0.26 tolerated(0.27) benign(0.02) TCGA-06-0747-01 21 46066409 46066409 G A KRTAP10-11 Missense_Mutation p.A12T 0.47 tolerated(0.35) unknown(0) TCGA-06-0747-01 21 46950811 46950811 C T SLC19A1 Missense_Mutation p.V342I 0.37 tolerated(0.25) benign(0.272) TCGA-06-0747-01 22 17073274 17073274 C T CCT8L2 Missense_Mutation p.R56Q 0.41 tolerated(0.09) probably_damaging(0.967) TCGA-06-0747-01 22 19799872 19799872 C T GNB1L Missense_Mutation p.S118N 0.58 tolerated(0.06) benign(0.093) TCGA-06-0747-01 22 32833790 32833790 C T BPIFC Missense_Mutation p.S235N 0.82 tolerated(0.36) benign(0.002) TCGA-06-0747-01 22 33402361 33402361 A G SYN3 Missense_Mutation p.V96A 0.79 deleterious(0) unknown(0) TCGA-06-0747-01 2 103095456 103095456 G A SLC9A4 Missense_Mutation p.V139I 0.34 tolerated(0.38) benign(0.06) TCGA-06-0747-01 2 122494487 122494487 C T NIFK 5'UTR 0.14 TCGA-06-0747-01 2 130900764 130900764 G A CCDC74B Intron 0.47 TCGA-06-0747-01 2 179542530 179542530 A G TTN Missense_Mutation p.V11370A 0.41 TCGA-06-0747-01 2 242800933 242800933 G A PDCD1 Missense_Mutation p.R20W 0.50 tolerated(0.19) benign(0.001) TCGA-06-0747-01 3 10413514 10413514 G A ATP2B2 Silent p.S546S 0.45 TCGA-06-0747-01 3 123428617 123428617 G C MYLK Missense_Mutation p.T643S 0.43 tolerated(0.15) benign(0.034) TCGA-06-0747-01 3 140397090 140397090 G A TRIM42 Missense_Mutation p.V7I 0.46 tolerated_low_confidence(0.33) unknown(0) TCGA-06-0747-01 3 147114065 147114065 C T ZIC4 Missense_Mutation p.A138T 0.43 tolerated(0.19) benign(0.009) TCGA-06-0747-01 3 184571960 184571960 G A VPS8 Missense_Mutation p.R345Q 0.46 tolerated(0.16) benign(0.006) TCGA-06-0747-01 3 26751737 26751737 G A LRRC3B Missense_Mutation p.A192T 0.44 tolerated(0.6) benign(0.001) TCGA-06-0747-01 3 49940194 49940194 A G MST1R Silent p.L283L 0.50 TCGA-06-0747-01 3 52851043 52851043 C T ITIH4 Silent p.E776E 0.44 TCGA-06-0747-01 3 65425604 65425612 TGCTGCTGC - MAGI1 In_Frame_Del p.Q419_Q421del 0.36 TCGA-06-0747-01 3 97506846 97506846 G A ARL6 Missense_Mutation p.R121H 0.59 deleterious(0) possibly_damaging(0.749) TCGA-06-0747-01 3 98189167 98189167 A G OR5K1 Silent p.S249S 0.51 TCGA-06-0747-01 3 98507190 98507190 G C ST3GAL6 Missense_Mutation p.K213N 0.28 deleterious(0.02) probably_damaging(0.955) TCGA-06-0747-01 4 38830788 38830788 C T TLR6 Missense_Mutation p.E103K 0.37 deleterious(0.03) probably_damaging(0.964) TCGA-06-0747-01 4 81123201 81123201 C T PRDM8 Silent p.G195G 0.07 TCGA-06-0747-01 5 108680493 108680493 C A PJA2 Missense_Mutation p.A598S 0.35 deleterious(0.02) benign(0.257) TCGA-06-0747-01 5 141385836 141385838 GAA - GNPDA1 In_Frame_Del p.F94del 0.38 TCGA-06-0747-01 5 173317554 173317554 A - CPEB4 Frame_Shift_Del p.H273Lfs*49 0.17 TCGA-06-0747-01 5 45262309 45262309 T A HCN1 Missense_Mutation p.E796V 0.41 deleterious_low_confidence(0.02) benign(0.348) TCGA-06-0747-01 6 27220721 27220721 C T PRSS16 Silent p.F381F 0.43 TCGA-06-0747-01 6 34838669 34838669 C T UHRF1BP1 Missense_Mutation p.H1253Y 0.42 tolerated(0.21) benign(0.002) TCGA-06-0747-01 6 74227627 74227627 G A EEF1A1 Missense_Mutation p.T432I 0.27 deleterious_low_confidence(0.03) possibly_damaging(0.58) TCGA-06-0747-01 6 75968538 75968538 G C TMEM30A Missense_Mutation p.P284A 0.39 tolerated(0.59) possibly_damaging(0.61) TCGA-06-0747-01 6 80746263 80746263 G C TTK Missense_Mutation p.G666R 0.07 deleterious(0) probably_damaging(1) TCGA-06-0747-01 7 112724771 112724771 C T GPR85 Silent p.A2A 0.30 TCGA-06-0747-01 7 140267052 140267052 T C DENND2A Missense_Mutation p.N538S 0.22 tolerated(0.55) benign(0.007) TCGA-06-0747-01 7 150845924 150845924 A T GBX1 Missense_Mutation p.C282S 0.31 deleterious(0.04) benign(0.19) TCGA-06-0747-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.97 deleterious(0.02) probably_damaging(0.974) TCGA-06-0747-01 7 55221823 55221823 C T EGFR Silent p.A289A 0.96 TCGA-06-0747-01 7 57187520 57187520 T C ZNF479 3'UTR 0.33 TCGA-06-0747-01 7 57187897 57187897 A G ZNF479 Missense_Mutation p.Y409H 0.34 deleterious(0.02) benign(0.168) TCGA-06-0747-01 8 141570507 141570507 C T AGO2 Silent p.R207R 0.36 TCGA-06-0747-01 8 56985787 56985787 A T RPS20 Silent p.S74S 0.49 TCGA-06-0747-01 8 68140324 68140327 TAAT - ARFGEF1 Frame_Shift_Del p.E1154Dfs*15 0.42 TCGA-06-0747-01 9 114188086 114188086 C T KIAA0368 Missense_Mutation p.G536D 0.44 tolerated(0.06) probably_damaging(0.919) TCGA-06-0747-01 9 123156840 123156840 A C CDK5RAP2 Missense_Mutation p.M1843R 0.41 deleterious(0) benign(0.071) TCGA-06-0747-01 9 125239745 125239745 G A OR1J1 Missense_Mutation p.A154V 0.39 tolerated_low_confidence(0.22) benign(0.032) TCGA-06-0747-01 9 19056295 19056295 T C HAUS6 3'UTR 0.89 TCGA-06-0747-01 9 21206995 21206995 A G IFNA10 Silent p.N34N 0.77 TCGA-06-0747-01 9 32635601 32635601 G A TAF1L 5'UTR 0.62 TCGA-06-0747-01 X 18660121 18660121 G T RS1 3'UTR 0.90 TCGA-06-0747-01 Y 5605524 5605524 C A PCDH11Y Silent p.L1188L 0.91 TCGA-06-0749-01 10 89720738 89720738 G - PTEN Frame_Shift_Del p.D297Ifs*10 0.30 TCGA-06-0749-01 11 18231374 18231374 G A RP11-113D6.10 Missense_Mutation p.A54T 0.23 tolerated(0.3) benign(0.06) TCGA-06-0749-01 11 56086620 56086620 G T OR8K3 Missense_Mutation p.V280F 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.695) TCGA-06-0749-01 11 58034677 58034677 C A OR10W1 Missense_Mutation p.K218N 0.32 deleterious(0.05) benign(0.076) TCGA-06-0749-01 12 104014256 104014256 T G STAB2 Silent p.G114G 0.19 TCGA-06-0749-01 12 131622720 131622720 G A GPR133 Silent p.S825S 0.13 TCGA-06-0749-01 12 41582311 41582311 C A PDZRN4 Nonsense_Mutation p.C18* 0.11 TCGA-06-0749-01 12 59272793 59272793 G T LRIG3 Silent p.P632P 0.26 TCGA-06-0749-01 12 93148040 93148040 C T PLEKHG7 Missense_Mutation p.R164W 0.28 tolerated(0.09) benign(0.032) TCGA-06-0749-01 13 103474461 103474462 - A BIVM-ERCC5 Nonsense_Mutation p.Y257* 0.22 TCGA-06-0749-01 14 66028372 66028372 C T FUT8 Nonsense_Mutation p.R31* 0.29 TCGA-06-0749-01 14 96917806 96917806 T C AK7 Missense_Mutation p.F333L 0.29 tolerated(0.07) benign(0.011) TCGA-06-0749-01 16 24166139 24166139 G A PRKCB Silent p.P400P 0.28 TCGA-06-0749-01 16 25143735 25143735 G A LCMT1 Missense_Mutation p.R73Q 0.44 deleterious(0.03) probably_damaging(1) TCGA-06-0749-01 16 3842056 3842056 C T CREBBP Nonsense_Mutation p.W419* 0.28 TCGA-06-0749-01 17 10427836 10427836 C T MYH2 Missense_Mutation p.A1708T 0.22 deleterious(0.01) benign(0.183) TCGA-06-0749-01 17 39767641 39767641 C T KRT16 Missense_Mutation p.G243S 0.32 tolerated(1) benign(0.041) TCGA-06-0749-01 17 51900949 51900949 C T KIF2B Silent p.Y185Y 0.27 TCGA-06-0749-01 17 54452045 54452045 G A ANKFN1 Missense_Mutation p.V297I 0.17 tolerated(0.39) benign(0.035) TCGA-06-0749-01 17 63848135 63848135 C T CEP112 Silent p.E727E 0.28 TCGA-06-0749-01 19 15990424 15990424 G A CYP4F2 Missense_Mutation p.P435L 0.17 deleterious(0.03) benign(0.224) TCGA-06-0749-01 19 8320541 8320541 C G CERS4 Silent p.T114T 0.29 TCGA-06-0749-01 1 152276886 152276886 G A FLG Silent p.D3492D 0.29 TCGA-06-0749-01 1 152648777 152648777 C A LCE2C Missense_Mutation p.P96T 0.22 tolerated_low_confidence(0.64) unknown(0) TCGA-06-0749-01 1 154062058 154062058 G A NUP210L Nonsense_Mutation p.R734* 0.34 TCGA-06-0749-01 1 161023102 161023102 C T ARHGAP30 Missense_Mutation p.V204M 0.35 deleterious(0) probably_damaging(0.999) TCGA-06-0749-01 1 17990973 17990973 C T ARHGEF10L Silent p.P964P 0.23 TCGA-06-0749-01 1 247607348 247607348 C T NLRP3 Missense_Mutation p.T915M 0.16 tolerated(0.15) benign(0.133) TCGA-06-0749-01 20 62724089 62724089 C T OPRL1 Missense_Mutation p.P6S 0.21 tolerated(0.21) benign(0.005) TCGA-06-0749-01 21 39671533 39671533 C T KCNJ15 Missense_Mutation p.A117V 0.34 deleterious(0) probably_damaging(0.999) TCGA-06-0749-01 21 43522316 43522316 C A UMODL1 Missense_Mutation p.H409Q 0.20 tolerated(0.17) possibly_damaging(0.583) TCGA-06-0749-01 2 132021710 132021710 C T POTEE Silent p.T894T 0.23 TCGA-06-0749-01 2 192275792 192275792 T C MYO1B Missense_Mutation p.C923R 0.36 deleterious(0) probably_damaging(0.997) TCGA-06-0749-01 2 26705441 26705441 T C OTOF Missense_Mutation p.K471R 0.27 tolerated(0.09) possibly_damaging(0.539) TCGA-06-0749-01 2 32695356 32695356 T A BIRC6 Missense_Mutation p.H2156Q 0.25 benign(0.001) TCGA-06-0749-01 2 74275488 74275489 AC - TET3 Frame_Shift_Del p.P682Cfs*22 0.27 TCGA-06-0749-01 2 9994457 9994457 C T TAF1B Silent p.N102N 0.23 TCGA-06-0749-01 3 121980530 121980530 C T CASR Silent p.D216D 0.24 TCGA-06-0749-01 3 123038564 123038564 C T ADCY5 Missense_Mutation p.R738H 0.20 tolerated(0.11) benign(0.066) TCGA-06-0749-01 3 14862751 14862751 T A FGD5 Missense_Mutation p.Y725N 0.32 deleterious(0.03) possibly_damaging(0.572) TCGA-06-0749-01 3 183994405 183994405 C T ECE2 Intron 0.44 TCGA-06-0749-01 3 196675037 196675037 C T PIGZ Missense_Mutation p.R244H 0.10 tolerated(0.54) benign(0.002) TCGA-06-0749-01 3 49568839 49568839 A G DAG1 Missense_Mutation p.I299V 0.31 tolerated(0.39) benign(0.235) TCGA-06-0749-01 4 155414 155414 C T ZNF718 RNA 0.19 TCGA-06-0749-01 4 40440359 40440359 G A RBM47 Silent p.Y184Y 0.29 TCGA-06-0749-01 4 76793227 76793227 C T PPEF2 Missense_Mutation p.V534M 0.22 deleterious(0.01) benign(0.12) TCGA-06-0749-01 5 140237259 140237259 G A PCDHA10 Silent p.P542P 0.21 TCGA-06-0749-01 5 140517047 140517052 GGCCCA - PCDHB5 In_Frame_Del p.Q681_A682del 0.13 TCGA-06-0749-01 5 33596125 33596125 G A ADAMTS12 Silent p.R856R 0.29 TCGA-06-0749-01 6 29430405 29430405 G A OR2H1 Missense_Mutation p.V287I 0.37 tolerated(1) benign(0.001) TCGA-06-0749-01 6 29599228 29599228 G A GABBR1 Silent p.V78V 0.21 TCGA-06-0749-01 6 3104537 3104537 C T RIPK1 Missense_Mutation p.R332W 0.22 tolerated(0.13) probably_damaging(0.973) TCGA-06-0749-01 6 32729588 32729588 G A HLA-DQB2 Silent p.D71D 0.25 TCGA-06-0749-01 7 117020042 117020042 T C ASZ1 Silent p.V335V 0.10 TCGA-06-0749-01 7 139416214 139416214 C T HIPK2 Missense_Mutation p.R207Q 0.05 deleterious(0) probably_damaging(0.979) TCGA-06-0749-01 7 143048733 143048733 G A CLCN1 Missense_Mutation p.R881H 0.25 deleterious(0) possibly_damaging(0.87) TCGA-06-0749-01 7 45216987 45216987 C T RAMP3 Silent p.D46D 0.12 TCGA-06-0749-01 7 5417608 5417608 G A TNRC18 Missense_Mutation p.R734W 0.15 probably_damaging(0.991) TCGA-06-0749-01 7 55221821 55221821 G A EGFR Missense_Mutation p.A289T 0.24 deleterious(0) probably_damaging(0.981) TCGA-06-0749-01 7 55249022 55249022 G A EGFR Missense_Mutation p.V774M 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-0749-01 7 82582186 82582186 A - PCLO Frame_Shift_Del p.S2695Pfs*2 0.20 TCGA-06-0749-01 7 99694927 99694927 G A MCM7 Missense_Mutation p.R400C 0.25 deleterious(0) probably_damaging(1) TCGA-06-0749-01 8 73848914 73848914 C T KCNB2 Missense_Mutation p.R442W 0.29 deleterious(0) probably_damaging(0.997) TCGA-06-0749-01 9 16419304 16419304 C T BNC2 Missense_Mutation p.G995R 0.22 deleterious(0.04) benign(0.005) TCGA-06-0749-01 9 32631824 32631824 G A TAF1L Missense_Mutation p.R1252W 0.58 deleterious(0) probably_damaging(1) TCGA-06-0749-01 9 43626002 43626002 C T SPATA31A6 Silent p.P895P 0.35 TCGA-06-0749-01 9 71114257 71114257 G A PGM5 Missense_Mutation p.G532S 0.12 tolerated(0.07) benign(0.001) TCGA-06-0749-01 X 123205046 123205047 TA - STAG2 Frame_Shift_Del p.M803Vfs*5 0.46 TCGA-06-0750-01 10 30657424 30657424 C T AL161651.1 5'Flank 0.80 TCGA-06-0750-01 11 126134309 126134309 C A SRPR Nonsense_Mutation p.G551* 0.33 TCGA-06-0750-01 11 2950491 2950491 C T PHLDA2 Missense_Mutation p.R35H 0.34 deleterious(0) possibly_damaging(0.729) TCGA-06-0750-01 11 5068409 5068409 G A OR52J3 Silent p.S218S 0.34 TCGA-06-0750-01 11 55681318 55681318 C T OR5W2 Silent p.A247A 0.23 TCGA-06-0750-01 11 72293532 72293532 A G PDE2A Missense_Mutation p.F603L 0.35 tolerated(0.1) benign(0.221) TCGA-06-0750-01 11 7818191 7818191 G A OR5P2 Missense_Mutation p.A100V 0.35 tolerated(0.72) benign(0.005) TCGA-06-0750-01 12 100904745 100904745 G A NR1H4 Missense_Mutation p.R100H 0.36 deleterious(0.02) possibly_damaging(0.556) TCGA-06-0750-01 12 72057129 72057129 G A ZFC3H1 Missense_Mutation p.R88C 0.38 deleterious_low_confidence(0) possibly_damaging(0.689) TCGA-06-0750-01 14 25042828 25042828 G A CTSG 3'UTR 0.54 TCGA-06-0750-01 15 101718018 101718018 G A CHSY1 Nonsense_Mutation p.Q662* 0.13 TCGA-06-0750-01 15 27114460 27114460 T C GABRA5 Missense_Mutation p.M22T 0.37 tolerated_low_confidence(0.25) benign(0) TCGA-06-0750-01 15 40328465 40328465 A G SRP14 3'UTR 0.34 TCGA-06-0750-01 15 45003686 45003686 A C B2M 5'UTR 0.39 TCGA-06-0750-01 16 89704306 89704306 G A DPEP1 Missense_Mutation p.R331K 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-0750-01 17 39975472 39975472 C T FKBP10 Silent p.I246I 0.31 TCGA-06-0750-01 17 45681356 45681356 C T NPEPPS Missense_Mutation p.R606C 0.11 deleterious(0.01) possibly_damaging(0.773) TCGA-06-0750-01 17 7495610 7495610 G A FXR2 Missense_Mutation p.R630C 0.32 deleterious_low_confidence(0.02) benign(0.276) TCGA-06-0750-01 18 28934664 28934664 C T DSG1 Silent p.V835V 0.14 TCGA-06-0750-01 18 43212315 43212315 G T SLC14A2 Missense_Mutation p.R174S 0.39 tolerated(0.13) possibly_damaging(0.78) TCGA-06-0750-01 18 58038973 58038973 T A MC4R Missense_Mutation p.M204L 0.15 tolerated(0.07) benign(0.005) TCGA-06-0750-01 18 77796687 77796687 A C RBFA Missense_Mutation p.S60R 0.27 deleterious(0.04) benign(0.333) TCGA-06-0750-01 19 17844106 17844106 G T MAP1S Nonsense_Mutation p.E965* 0.36 TCGA-06-0750-01 19 22574462 22574462 T A ZNF98 Missense_Mutation p.K525N 0.25 deleterious(0.04) possibly_damaging(0.539) TCGA-06-0750-01 19 49840274 49840274 G A CD37 Missense_Mutation p.R84H 0.06 deleterious(0.02) benign(0.08) TCGA-06-0750-01 1 1222331 1222331 C T SCNN1D Silent p.S365S 0.47 TCGA-06-0750-01 1 173744944 173744944 G T KLHL20 Missense_Mutation p.W534L 0.30 deleterious(0) possibly_damaging(0.825) TCGA-06-0750-01 1 78958414 78958414 T A PTGFR 5'UTR 0.45 TCGA-06-0750-01 1 85656020 85656020 C A SYDE2 Missense_Mutation p.L387F 0.11 tolerated_low_confidence(0.21) benign(0.169) TCGA-06-0750-01 20 24930092 24930092 C A CST7 5'UTR 0.32 TCGA-06-0750-01 20 31656654 31656654 C T BPIFB3 Missense_Mutation p.R342W 0.29 deleterious(0.02) probably_damaging(0.984) TCGA-06-0750-01 20 34487354 34487354 G T PHF20 Missense_Mutation p.D449Y 0.25 tolerated(0.08) possibly_damaging(0.882) TCGA-06-0750-01 21 43803180 43803180 C T TMPRSS3 Silent p.T248T 0.30 TCGA-06-0750-01 22 24622188 24622188 C T GGT5 Missense_Mutation p.R362H 0.34 deleterious(0.02) benign(0.262) TCGA-06-0750-01 2 128408380 128408380 G T GPR17 Missense_Mutation p.G52V 0.36 tolerated(0.53) benign(0.039) TCGA-06-0750-01 2 131521709 131521709 C T AMER3 Silent p.N688N 0.38 TCGA-06-0750-01 3 44968173 44968173 G A ZDHHC3 3'UTR 0.26 TCGA-06-0750-01 4 159136389 159136389 C G TMEM144 Silent p.A52A 0.34 TCGA-06-0750-01 4 73013277 73013277 C T NPFFR2 Silent p.N439N 0.30 TCGA-06-0750-01 5 132535036 132535036 G T FSTL4 Missense_Mutation p.D760E 0.35 deleterious(0) benign(0.14) TCGA-06-0750-01 5 67591246 67591246 A G PIK3R1 Splice_Site p.X582_splice 0.33 TCGA-06-0750-01 6 86253476 86253476 C A SNX14 Nonsense_Mutation p.E371* 0.34 TCGA-06-0750-01 7 128498602 128498602 C G FLNC 3'UTR 0.21 TCGA-06-0750-01 7 134346723 134346723 C T BPGM Missense_Mutation p.S155L 0.17 deleterious(0.04) benign(0.279) TCGA-06-0750-01 7 30544364 30544364 G T GGCT 5'UTR 0.26 TCGA-06-0750-01 7 55221821 55221821 G A EGFR Missense_Mutation p.A289T 0.14 deleterious(0) probably_damaging(0.981) TCGA-06-0750-01 7 55221822 55221822 C A EGFR Missense_Mutation p.A289D 0.17 deleterious(0) probably_damaging(0.986) TCGA-06-0750-01 7 55233037 55233037 C G EGFR Missense_Mutation p.P596R 0.23 deleterious(0.01) probably_damaging(0.945) TCGA-06-0750-01 7 94913394 94913394 C T PPP1R9A Missense_Mutation p.R1121C 0.07 tolerated(0.18) possibly_damaging(0.663) TCGA-06-0750-01 9 140128961 140128961 C T SLC34A3 Missense_Mutation p.T396M 0.44 deleterious(0) probably_damaging(0.998) TCGA-06-0750-01 X 32663088 32663088 G C DMD Missense_Mutation p.T381S 0.12 benign(0.028) TCGA-06-0750-01 Y 4968500 4968500 A G PCDH11Y Missense_Mutation p.K961E 0.16 tolerated(0.27) probably_damaging(0.999) TCGA-06-0875-01 10 89717712 89717712 C T PTEN Missense_Mutation p.P246L 0.66 tolerated(0.06) benign(0.132) TCGA-06-0875-01 10 89720659 89720659 G A PTEN Missense_Mutation p.M270I 0.57 tolerated(0.06) benign(0.086) TCGA-06-0875-01 11 19077538 19077538 G A MRGPRX2 Missense_Mutation p.R138C 0.22 deleterious(0.03) possibly_damaging(0.584) TCGA-06-0875-01 11 3249621 3249621 G A MRGPRE Missense_Mutation p.R136C 0.50 deleterious(0) probably_damaging(0.957) TCGA-06-0875-01 11 45925671 45925671 A G MAPK8IP1 Missense_Mutation p.Y542C 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-0875-01 11 56185215 56185215 C T OR5R1 Missense_Mutation p.R165H 0.37 tolerated(0.49) benign(0.01) TCGA-06-0875-01 11 56950146 56950146 G A LRRC55 Missense_Mutation p.R260H 0.38 tolerated(0.06) benign(0.011) TCGA-06-0875-01 11 74546969 74546969 C T RNF169 Missense_Mutation p.R441W 0.41 deleterious(0) probably_damaging(0.999) TCGA-06-0875-01 12 111168342 111168342 T A PPP1CC Missense_Mutation p.Y137F 0.18 deleterious_low_confidence(0.04) possibly_damaging(0.687) TCGA-06-0875-01 12 124416577 124416577 G A DNAH10 Silent p.R4288R 0.42 TCGA-06-0875-01 12 44189263 44189263 A G TWF1 3'Flank 0.21 TCGA-06-0875-01 12 4643363 4643363 A C C12orf4 Nonsense_Mutation p.L95* 0.44 TCGA-06-0875-01 12 7295764 7295764 C T CLSTN3 Silent p.H568H 0.33 TCGA-06-0875-01 14 47351248 47351248 A G MDGA2 Silent p.S805S 0.27 TCGA-06-0875-01 14 50808934 50808934 G A CDKL1 Missense_Mutation p.H125Y 0.50 deleterious(0) probably_damaging(1) TCGA-06-0875-01 14 51196324 51196324 G A NIN Missense_Mutation p.R1999C 0.58 tolerated(0.07) possibly_damaging(0.471) TCGA-06-0875-01 14 74874104 74874104 G A SYNDIG1L 3'UTR 0.43 TCGA-06-0875-01 14 96949427 96949427 C T AK7 Silent p.D615D 0.18 TCGA-06-0875-01 15 23048832 23048832 G T NIPA1 Missense_Mutation p.D329E 0.27 tolerated(0.26) benign(0.024) TCGA-06-0875-01 15 86270682 86270682 C G AKAP13 Missense_Mutation p.R2363G 0.31 deleterious(0) probably_damaging(0.977) TCGA-06-0875-01 15 89417650 89417650 C T ACAN Missense_Mutation p.R2511C 0.33 deleterious(0) probably_damaging(0.987) TCGA-06-0875-01 15 89859714 89859714 A C POLG 3'UTR 0.35 TCGA-06-0875-01 16 1507256 1507256 T C CLCN7 Missense_Mutation p.K274R 0.24 tolerated(0.33) benign(0.007) TCGA-06-0875-01 16 70551628 70551628 C G COG4 Silent p.L90L 0.21 TCGA-06-0875-01 16 71603782 71603782 C T TAT Missense_Mutation p.R367H 0.39 tolerated(0.17) benign(0.003) TCGA-06-0875-01 16 75665416 75665416 C T KARS Missense_Mutation p.D412N 0.18 tolerated(0.05) benign(0.007) TCGA-06-0875-01 16 84812553 84812553 C A USP10 Silent p.V754V 0.33 TCGA-06-0875-01 17 11515155 11515155 G T DNAH9 Intron 0.40 TCGA-06-0875-01 17 26816246 26816246 G A SLC13A2 Silent p.A39A 0.40 TCGA-06-0875-01 17 5991317 5991317 C T WSCD1 Silent p.Y145Y 0.27 TCGA-06-0875-01 17 66267054 66267054 T G SLC16A6 Missense_Mutation p.E416A 0.34 tolerated(0.11) benign(0.093) TCGA-06-0875-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.61 deleterious(0) probably_damaging(0.997) TCGA-06-0875-01 17 80014960 80014960 T C GPS1 Missense_Mutation p.L514P 0.30 deleterious_low_confidence(0.01) benign(0.015) TCGA-06-0875-01 18 12262928 12262928 G A CIDEA Missense_Mutation p.R48H 0.43 deleterious(0.04) probably_damaging(0.993) TCGA-06-0875-01 19 35556818 35556818 C T HPN Missense_Mutation p.T366M 0.46 deleterious(0.04) benign(0.06) TCGA-06-0875-01 19 49414468 49414468 C G NUCB1 Missense_Mutation p.H147D 0.15 tolerated(0.22) benign(0.284) TCGA-06-0875-01 19 57722987 57722987 G A ZNF264 Silent p.E174E 0.20 TCGA-06-0875-01 19 9046404 9046404 C T MUC16 Missense_Mutation p.V11743M 0.50 possibly_damaging(0.593) TCGA-06-0875-01 1 151509856 151509856 G A CGN 3'UTR 0.45 TCGA-06-0875-01 1 152282713 152282713 G C FLG Nonsense_Mutation p.S1550* 0.38 TCGA-06-0875-01 1 169680755 169680755 G A SELL 5'UTR 0.21 TCGA-06-0875-01 1 33745881 33745881 G A ZNF362 Missense_Mutation p.S169N 0.35 deleterious(0.05) benign(0.206) TCGA-06-0875-01 1 62190731 62190731 C A TM2D1 Missense_Mutation p.G83V 0.42 tolerated(0.06) benign(0.089) TCGA-06-0875-01 1 981607 981607 G A AGRN Missense_Mutation p.G958D 0.39 tolerated(0.22) probably_damaging(0.982) TCGA-06-0875-01 20 5904212 5904212 C T CHGB Silent p.Y474Y 0.44 TCGA-06-0875-01 21 45825917 45825917 G A TRPM2 Silent p.R929R 0.44 TCGA-06-0875-01 2 220414057 220414057 A G TMEM198 Missense_Mutation p.N309S 0.38 tolerated(0.51) benign(0.11) TCGA-06-0875-01 3 137717874 137717874 G A CLDN18 Missense_Mutation p.R55Q 0.38 tolerated(0.62) benign(0.009) TCGA-06-0875-01 3 30732972 30732972 C T TGFBR2 Missense_Mutation p.L554F 0.21 deleterious(0) probably_damaging(1) TCGA-06-0875-01 3 48696782 48696782 C T CELSR3 Missense_Mutation p.E1096K 0.42 deleterious(0) possibly_damaging(0.766) TCGA-06-0875-01 3 49699300 49699300 C T BSN Missense_Mutation p.P3341L 0.17 unknown(0) TCGA-06-0875-01 3 53139764 53139764 C A RFT1 Missense_Mutation p.Q294H 0.25 tolerated(0.06) probably_damaging(0.95) TCGA-06-0875-01 4 154626088 154626088 C T TLR2 Missense_Mutation p.R677W 0.40 deleterious(0) probably_damaging(1) TCGA-06-0875-01 4 47575010 47575010 A T ATP10D Missense_Mutation p.N1121I 0.06 deleterious(0) probably_damaging(1) TCGA-06-0875-01 4 57189704 57189704 A - KIAA1211 Frame_Shift_Del p.K1117Nfs*53 0.45 TCGA-06-0875-01 5 13735337 13735337 G A DNAH5 Silent p.Y3888Y 0.42 TCGA-06-0875-01 5 140256980 140256980 C T PCDHA12 Silent p.D641D 0.34 TCGA-06-0875-01 5 158743755 158743755 G A IL12B Missense_Mutation p.R309W 0.36 deleterious(0) possibly_damaging(0.784) TCGA-06-0875-01 5 93076209 93076209 C A POU5F2 3'UTR 0.17 TCGA-06-0875-01 6 112385979 112385979 A G WISP3 Missense_Mutation p.E141G 0.31 tolerated(0.21) probably_damaging(0.999) TCGA-06-0875-01 6 170627660 170627695 CCCTGAATCCAGGCGAGAAGTTCCCATGTGTTCAGA - FAM120B In_Frame_Del p.S397_E408del 0.32 TCGA-06-0875-01 6 18207666 18207666 C T KDM1B Missense_Mutation p.A334V 0.40 deleterious(0.04) unknown(0) TCGA-06-0875-01 6 27858448 27858451 GCGG - HIST1H3J Frame_Shift_Del p.R41Tfs*49 0.49 TCGA-06-0875-01 6 84233953 84233953 C T PRSS35 Nonsense_Mutation p.R265* 0.47 TCGA-06-0875-01 7 100816793 100816793 C T NAT16 Silent p.L107L 0.23 TCGA-06-0875-01 7 37780069 37780069 T A GPR141 Missense_Mutation p.F25Y 0.11 tolerated(1) benign(0.127) TCGA-06-0875-01 7 37923971 37923971 C T NME8 Missense_Mutation p.S354L 0.19 deleterious(0) probably_damaging(0.969) TCGA-06-0875-01 7 38530706 38530706 C T AMPH Missense_Mutation p.V114M 0.23 deleterious(0) probably_damaging(0.992) TCGA-06-0875-01 7 92763951 92763951 T C SAMD9L Missense_Mutation p.E445G 0.10 deleterious(0) possibly_damaging(0.885) TCGA-06-0875-01 7 93518519 93518519 G A TFPI2 Silent p.C96C 0.11 TCGA-06-0875-01 7 99447306 99447306 T C CYP3A43 Missense_Mutation p.L220S 0.22 deleterious(0.05) benign(0.209) TCGA-06-0875-01 8 39080734 39080734 G A ADAM32 Missense_Mutation p.R501H 0.41 tolerated(0.24) benign(0.067) TCGA-06-0875-01 8 39785510 39785510 G C IDO1 Missense_Mutation p.V340L 0.17 tolerated(0.15) benign(0.202) TCGA-06-0875-01 8 99215392 99215392 G A NIPAL2 Missense_Mutation p.T275M 0.37 tolerated(0.13) benign(0.082) TCGA-06-0875-01 9 139568283 139568283 C A AGPAT2 Missense_Mutation p.R253M 0.19 tolerated(0.21) benign(0.109) TCGA-06-0875-01 9 35560384 35560384 G T RUSC2 Missense_Mutation p.E1249D 0.48 tolerated(0.36) benign(0.137) TCGA-06-0875-01 9 730069 730069 C G KANK1 Missense_Mutation p.T906S 0.28 tolerated(0.42) benign(0.004) TCGA-06-0875-01 9 74305126 74305126 C T TMEM2 Missense_Mutation p.V1245I 0.33 tolerated(1) benign(0.002) TCGA-06-0875-01 9 75387401 75387401 A T TMC1 Missense_Mutation p.R272W 0.72 deleterious(0) probably_damaging(0.997) TCGA-06-0875-01 X 100656595 100656595 C T RPL36A-HNRNPH2 Intron 0.21 TCGA-06-0875-01 X 15307657 15307657 C A ASB11 Missense_Mutation p.R208S 0.20 tolerated(0.12) benign(0.031) TCGA-06-0875-01 X 16170433 16170433 G A GRPR Missense_Mutation p.A274T 0.23 deleterious(0.01) probably_damaging(1) TCGA-06-0875-01 X 31089888 31089888 G A FTHL17 Silent p.D61D 0.56 TCGA-06-0875-01 X 55103027 55103027 G A PAGE2B Missense_Mutation p.R37H 0.39 tolerated(0.13) benign(0.025) TCGA-06-0875-01 X 83320106 83320106 T C RPS6KA6 Missense_Mutation p.H662R 0.30 tolerated(0.4) benign(0.002) TCGA-06-0876-01 10 50873009 50873009 T C CHAT Missense_Mutation p.C722R 0.68 deleterious(0) possibly_damaging(0.489) TCGA-06-0876-01 10 89653838 89653838 T C PTEN Missense_Mutation p.Y46H 0.69 deleterious(0.04) possibly_damaging(0.813) TCGA-06-0876-01 11 30926660 30926660 G A DCDC1 Missense_Mutation p.R1386C 0.28 tolerated(0.23) possibly_damaging(0.835) TCGA-06-0876-01 11 48266856 48266856 C T OR4X2 Silent p.S67S 0.35 TCGA-06-0876-01 11 65647754 65647754 G A CTSW Missense_Mutation p.E57K 0.38 tolerated(0.17) benign(0.081) TCGA-06-0876-01 12 120651689 120651689 A C PXN Missense_Mutation p.S503A 0.30 deleterious(0.03) probably_damaging(0.939) TCGA-06-0876-01 12 55863703 55863703 C A OR6C70 Missense_Mutation p.A74S 0.39 deleterious_low_confidence(0.03) benign(0.004) TCGA-06-0876-01 12 68551725 68551725 G A IFNG Nonsense_Mutation p.R112* 0.36 TCGA-06-0876-01 13 110817226 110817226 C T COL4A1 Missense_Mutation p.G1378D 0.42 probably_damaging(0.999) TCGA-06-0876-01 13 33017656 33017656 G A N4BP2L2 Nonsense_Mutation p.Q340* 0.28 TCGA-06-0876-01 14 106091381 106091381 C T IGHG4 Silent p.P171P 0.35 TCGA-06-0876-01 15 65209682 65209682 C T ANKDD1A Missense_Mutation p.A79V 0.27 tolerated(0.23) benign(0.021) TCGA-06-0876-01 15 91454400 91454400 G A MAN2A2 Splice_Site p.X626_splice 0.05 TCGA-06-0876-01 17 21319710 21319710 C T KCNJ12 Silent p.P352P 0.13 TCGA-06-0876-01 17 6338338 6338338 G A AIPL1 Silent p.T29T 0.33 TCGA-06-0876-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.36 deleterious(0) probably_damaging(1) TCGA-06-0876-01 18 52265157 52265157 C A DYNAP Missense_Mutation p.N138K 0.38 tolerated(0.09) possibly_damaging(0.859) TCGA-06-0876-01 18 57103105 57103105 T C CCBE1 3'UTR 0.32 TCGA-06-0876-01 18 61223463 61223463 G A SERPINB12 Missense_Mutation p.R24H 0.36 tolerated(0.54) benign(0.003) TCGA-06-0876-01 19 12996209 12996209 G A KLF1 Missense_Mutation p.H279Y 0.23 deleterious(0.04) probably_damaging(0.932) TCGA-06-0876-01 19 1376610 1376610 C T MUM1 3'UTR 0.32 TCGA-06-0876-01 19 22155610 22155610 A G ZNF208 Silent p.I742I 0.24 TCGA-06-0876-01 19 23159513 23159513 G T ZNF728 Missense_Mutation p.A209D 0.66 tolerated(0.08) probably_damaging(0.952) TCGA-06-0876-01 19 41289974 41289974 G A RAB4B Missense_Mutation p.E142K 0.05 tolerated(0.07) probably_damaging(0.917) TCGA-06-0876-01 19 49714965 49714965 A G TRPM4 3'UTR 0.14 TCGA-06-0876-01 19 51629378 51629378 C T SIGLEC9 Silent p.D247D 0.36 TCGA-06-0876-01 19 51728757 51728757 C T CD33 Silent p.D107D 0.44 TCGA-06-0876-01 19 52568811 52568811 C T ZNF841 Missense_Mutation p.R775H 0.29 tolerated(0.39) possibly_damaging(0.898) TCGA-06-0876-01 19 8661023 8661023 A G ADAMTS10 Missense_Mutation p.I424T 0.36 deleterious(0) possibly_damaging(0.828) TCGA-06-0876-01 19 8661031 8661031 A G ADAMTS10 Silent p.A421A 0.33 TCGA-06-0876-01 1 110304367 110304367 G A EPS8L3 Missense_Mutation p.S2L 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-0876-01 1 168670256 168670256 T A DPT Missense_Mutation p.R180W 0.36 deleterious(0) probably_damaging(0.987) TCGA-06-0876-01 1 210637955 210637955 C T HHAT Silent p.L322L 0.33 TCGA-06-0876-01 1 214819979 214819979 G A CENPF Missense_Mutation p.A2356T 0.29 benign(0.001) TCGA-06-0876-01 1 231059600 231059600 T - TTC13 Frame_Shift_Del p.I601Lfs*3 0.30 TCGA-06-0876-01 1 34070881 34070881 C T CSMD2 Splice_Site p.X2180_splice 0.26 TCGA-06-0876-01 1 36228771 36228775 TTTAC - CLSPN Frame_Shift_Del p.V244Kfs*17 0.29 TCGA-06-0876-01 1 36883725 36883725 G A OSCP1 3'UTR 0.41 TCGA-06-0876-01 1 90050043 90050043 G A LRRC8B Missense_Mutation p.E612K 0.30 tolerated(0.07) probably_damaging(0.992) TCGA-06-0876-01 20 39977494 39977494 C T LPIN3 Missense_Mutation p.S175F 0.30 deleterious(0.02) possibly_damaging(0.62) TCGA-06-0876-01 20 43837052 43837052 C T SEMG1 Missense_Mutation p.R372C 0.40 deleterious(0.01) benign(0.018) TCGA-06-0876-01 20 47605879 47605879 C A ARFGEF2 Missense_Mutation p.A864D 0.06 deleterious(0) possibly_damaging(0.558) TCGA-06-0876-01 20 47865786 47865786 T G ZNFX1 Missense_Mutation p.M1259L 0.32 tolerated(0.06) benign(0.003) TCGA-06-0876-01 21 42771150 42771150 G A MX2 Missense_Mutation p.E434K 0.05 tolerated(0.89) possibly_damaging(0.751) TCGA-06-0876-01 21 46032419 46032419 C T KRTAP10-8 Silent p.C134C 0.08 TCGA-06-0876-01 22 21174060 21174060 G C PI4KA Missense_Mutation p.L220V 0.31 tolerated(0.29) benign(0.017) TCGA-06-0876-01 2 110672037 110672037 C T LIMS3 Missense_Mutation p.P131L 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-0876-01 2 128631554 128631554 C A AMMECR1L Silent p.A85A 0.28 TCGA-06-0876-01 2 169874658 169874658 C T ABCB11 5'UTR 0.34 TCGA-06-0876-01 2 239059722 239059722 C T KLHL30 3'UTR 0.26 TCGA-06-0876-01 2 74787316 74787316 G A M1AP Missense_Mutation p.R462W 0.08 deleterious(0.01) probably_damaging(0.927) TCGA-06-0876-01 2 89266017 89266017 C T IGKV1-6 Missense_Mutation p.D39N 0.35 deleterious(0.01) possibly_damaging(0.541) TCGA-06-0876-01 4 147561389 147561389 C T POU4F2 Missense_Mutation p.P220L 0.30 deleterious(0.01) benign(0.028) TCGA-06-0876-01 4 149357273 149357273 C T NR3C2 Missense_Mutation p.R247K 0.38 tolerated_low_confidence(0.06) benign(0.364) TCGA-06-0876-01 4 153881733 153881733 C T FHDC1 Missense_Mutation p.A227V 0.44 deleterious(0.04) possibly_damaging(0.7) TCGA-06-0876-01 5 121187738 121187738 C T FTMT Missense_Mutation p.A27V 0.38 tolerated_low_confidence(0.38) benign(0.005) TCGA-06-0876-01 5 140175903 140175903 G A PCDHA2 Missense_Mutation p.A452T 0.36 deleterious_low_confidence(0.02) benign(0.334) TCGA-06-0876-01 5 140604856 140604856 C T PCDHB14 Silent p.D593D 0.32 TCGA-06-0876-01 5 143328 143328 C T PLEKHG4B Silent p.D192D 0.28 TCGA-06-0876-01 5 159344026 159344026 C T ADRA1B Silent p.P38P 0.41 TCGA-06-0876-01 5 176795734 176795734 T C RGS14 Missense_Mutation p.L289P 0.33 tolerated(0.3) benign(0.033) TCGA-06-0876-01 6 152461140 152461140 C T SYNE1 Missense_Mutation p.R8468H 0.34 benign(0.009) TCGA-06-0876-01 6 28213024 28213024 A G ZKSCAN4 Missense_Mutation p.I503T 0.40 tolerated(0.18) benign(0.054) TCGA-06-0876-01 6 30121529 30121529 C T TRIM10 3'UTR 0.33 TCGA-06-0876-01 7 100552392 100552392 T A MUC3A Nonsense_Mutation p.Y381* 0.16 TCGA-06-0876-01 7 116960624 116960624 G A WNT2 Nonsense_Mutation p.R103* 0.15 TCGA-06-0876-01 7 129813714 129813714 G A TMEM209 Silent p.D470D 0.03 TCGA-06-0876-01 7 142224116 142224116 T A TRBV11-1 Missense_Mutation p.E17D 0.14 tolerated(0.63) benign(0.003) TCGA-06-0876-01 7 17367444 17367444 C A AHR Missense_Mutation p.T141N 0.28 deleterious(0.02) possibly_damaging(0.557) TCGA-06-0876-01 7 22165268 22165268 G A RAPGEF5 Silent p.I677I 0.29 TCGA-06-0876-01 7 5085851 5085851 C G RBAK 5'UTR 0.39 TCGA-06-0876-01 7 55211080 55211080 G A EGFR Missense_Mutation p.R108K 0.31 deleterious(0) probably_damaging(0.998) TCGA-06-0876-01 7 55221822 55221822 C A EGFR Missense_Mutation p.A289D 0.09 deleterious(0) probably_damaging(0.986) TCGA-06-0876-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.31 deleterious(0) possibly_damaging(0.75) TCGA-06-0876-01 7 99621816 99621816 G A ZKSCAN1 Missense_Mutation p.G156R 0.16 deleterious(0.04) benign(0.231) TCGA-06-0876-01 8 1496906 1496906 G A DLGAP2 Missense_Mutation p.G16E 0.47 tolerated(0.23) benign(0.097) TCGA-06-0876-01 8 24254921 24254921 C T ADAMDEC1 Silent p.D193D 0.26 TCGA-06-0876-01 8 59492353 59492353 G A SDCBP Silent p.K250K 0.35 TCGA-06-0876-01 9 114090506 114090506 C T OR2K2 Missense_Mutation p.D70N 0.42 deleterious(0) probably_damaging(1) TCGA-06-0876-01 9 117020836 117020836 C T COL27A1 Nonsense_Mutation p.R1053* 0.33 TCGA-06-0876-01 9 135374759 135374759 C T C9orf171 Missense_Mutation p.A135V 0.39 deleterious(0) probably_damaging(1) TCGA-06-0876-01 9 396909 396909 C G DOCK8 Missense_Mutation p.A1032G 0.27 tolerated(0.33) benign(0) TCGA-06-0876-01 9 399200 399200 C G DOCK8 Missense_Mutation p.L1059V 0.32 deleterious(0.01) probably_damaging(0.967) TCGA-06-0876-01 9 439373 439373 G A DOCK8 Silent p.A1736A 0.29 TCGA-06-0876-01 X 100911799 100911799 G A ARMCX2 Missense_Mutation p.A259V 0.39 deleterious_low_confidence(0) benign(0.354) TCGA-06-0876-01 X 105153109 105153109 G A NRK Silent p.Q493Q 0.29 TCGA-06-0876-01 X 110644367 110644367 G A DCX Missense_Mutation p.R267C 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-06-0876-01 X 118893488 118893488 G A SOWAHD Silent p.S286S 0.42 TCGA-06-0876-01 X 139866424 139866441 GTCTTCCAACAAAGGTAC - CDR1 In_Frame_Del p.V31_D36del 0.17 TCGA-06-0876-01 X 150912487 150912487 T A CNGA2 Missense_Mutation p.D504E 0.32 tolerated(0.12) benign(0.128) TCGA-06-0876-01 X 3021960 3021960 G A ARSF Silent p.Q420Q 0.44 TCGA-06-0876-01 X 39930272 39930272 C T BCOR Silent p.S1064S 0.08 TCGA-06-0876-01 X 48319395 48319395 G T SLC38A5 Missense_Mutation p.T310N 0.22 deleterious(0) possibly_damaging(0.821) TCGA-06-0876-01 X 53573431 53573431 G A HUWE1 Silent p.A3627A 0.21 TCGA-06-0877-01 10 127527726 127527726 G C DHX32 Missense_Mutation p.F575L 0.12 tolerated(0.15) benign(0.018) TCGA-06-0877-01 10 72517795 72517795 C T ADAMTS14 Silent p.C1008C 0.70 TCGA-06-0877-01 11 113815368 113815368 C G HTR3B Silent p.L327L 0.30 TCGA-06-0877-01 11 30034386 30034386 T C KCNA4 5'UTR 0.45 TCGA-06-0877-01 11 34515184 34515184 C T ELF5 Missense_Mutation p.C76Y 0.39 tolerated(1) probably_damaging(0.999) TCGA-06-0877-01 11 55541628 55541628 A T OR5D13 Missense_Mutation p.T239S 0.36 deleterious(0.01) benign(0.216) TCGA-06-0877-01 11 55594866 55594866 C A OR5L2 Missense_Mutation p.P58T 0.30 deleterious(0.01) probably_damaging(0.999) TCGA-06-0877-01 11 55681471 55681471 C G OR5W2 Missense_Mutation p.E196D 0.34 deleterious(0.03) benign(0.262) TCGA-06-0877-01 11 56468275 56468275 A T OR9G1 Nonsense_Mutation p.K138* 0.16 TCGA-06-0877-01 11 56468515 56468515 C A OR9G1 Missense_Mutation p.L218I 0.21 tolerated(0.4) benign(0.02) TCGA-06-0877-01 12 125834741 125834741 C G TMEM132B Missense_Mutation p.P266A 0.46 tolerated(0.19) possibly_damaging(0.641) TCGA-06-0877-01 12 53875972 53875972 C T MAP3K12 Missense_Mutation p.R778H 0.50 tolerated_low_confidence(0.19) possibly_damaging(0.614) TCGA-06-0877-01 13 75933904 75933904 C T TBC1D4 Splice_Site p.X390_splice 0.30 TCGA-06-0877-01 14 94849558 94849558 G A SERPINA1 Missense_Mutation p.S6L 0.30 deleterious(0.05) possibly_damaging(0.449) TCGA-06-0877-01 15 48566793 48566793 G A SLC12A1 Missense_Mutation p.V810M 0.38 deleterious(0.02) benign(0.133) TCGA-06-0877-01 15 74425374 74425374 C T ISLR2 Silent p.G93G 0.28 TCGA-06-0877-01 16 4909917 4909917 G A UBN1 Missense_Mutation p.D207N 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-06-0877-01 16 56928513 56928513 C T SLC12A3 Silent p.F873F 0.24 TCGA-06-0877-01 16 89656340 89656340 G A CPNE7 Missense_Mutation p.R441Q 0.36 tolerated(0.98) possibly_damaging(0.49) TCGA-06-0877-01 17 10419240 10419240 C G MYH1 Intron 0.33 TCGA-06-0877-01 17 16321183 16321183 G A TRPV2 Splice_Site p.X67_splice 0.38 TCGA-06-0877-01 17 37884124 37884124 C A ERBB2 Missense_Mutation p.P1199T 0.31 tolerated(0.41) possibly_damaging(0.847) TCGA-06-0877-01 17 38711666 38711666 G A CCR7 Silent p.Y155Y 0.25 TCGA-06-0877-01 17 41003669 41003669 G A AOC3 Silent p.L103L 0.34 TCGA-06-0877-01 17 51901522 51901522 C - KIF2B Frame_Shift_Del p.E378Rfs*24 0.20 TCGA-06-0877-01 17 80279936 80279936 C T SECTM1 3'UTR 0.47 TCGA-06-0877-01 18 33257555 33257555 G A GALNT1 Silent p.G105G 0.34 TCGA-06-0877-01 18 77918374 77918374 C T PARD6G Silent p.P137P 0.31 TCGA-06-0877-01 19 19745707 19745707 C T GMIP Missense_Mutation p.R594H 0.23 deleterious(0) probably_damaging(1) TCGA-06-0877-01 19 35837554 35837554 G A CD22 Missense_Mutation p.R833Q 0.36 deleterious(0.03) possibly_damaging(0.738) TCGA-06-0877-01 19 38633315 38633315 G T SIPA1L3 Silent p.S1166S 0.26 TCGA-06-0877-01 19 40097889 40097889 C T LGALS13 Silent p.Y110Y 0.26 TCGA-06-0877-01 19 49507675 49507675 G A RUVBL2 Missense_Mutation p.G89S 0.29 deleterious(0.01) probably_damaging(0.95) TCGA-06-0877-01 19 52942496 52942496 C T ZNF534 Nonsense_Mutation p.R608* 0.29 TCGA-06-0877-01 19 55220881 55220881 C T AC098784.2 3'Flank 0.33 TCGA-06-0877-01 19 58904370 58904370 G T RPS5 Missense_Mutation p.A46S 0.19 tolerated(0.2) possibly_damaging(0.61) TCGA-06-0877-01 19 6680227 6680227 G T C3 Nonsense_Mutation p.Y1466* 0.23 TCGA-06-0877-01 19 6913826 6913826 C T EMR1 Missense_Mutation p.R429W 0.25 deleterious(0.01) possibly_damaging(0.776) TCGA-06-0877-01 1 145608488 145608488 C T POLR3C Missense_Mutation p.V107I 0.34 tolerated(0.49) benign(0.014) TCGA-06-0877-01 1 170961347 170961347 C T MROH9 Silent p.S357S 0.30 TCGA-06-0877-01 1 237604756 237604756 C T RYR2 Silent p.S381S 0.32 TCGA-06-0877-01 1 242383388 242383388 C T PLD5 Missense_Mutation p.A213T 0.26 tolerated(0.39) possibly_damaging(0.787) TCGA-06-0877-01 1 247614785 247614785 G A OR2B11 Missense_Mutation p.T167M 0.49 deleterious(0.02) probably_damaging(0.999) TCGA-06-0877-01 1 31479941 31479941 C G PUM1 Missense_Mutation p.L147F 0.34 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-06-0877-01 20 16407806 16407806 C A KIF16B Missense_Mutation p.G519W 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-0877-01 20 16721733 16721733 T C SNRPB2 3'UTR 0.28 TCGA-06-0877-01 20 61542712 61542712 C T DIDO1 Missense_Mutation p.G85S 0.20 probably_damaging(1) TCGA-06-0877-01 21 47412280 47412280 A T COL6A1 Missense_Mutation p.N414Y 0.23 deleterious(0.04) unknown(0) TCGA-06-0877-01 22 22599423 22599423 C T VPREB1 Missense_Mutation p.R38C 0.33 deleterious(0) probably_damaging(0.949) TCGA-06-0877-01 2 125547685 125547685 A T CNTNAP5 Missense_Mutation p.N986Y 0.56 tolerated(0.83) benign(0.128) TCGA-06-0877-01 2 174231123 174231123 G A CDCA7 Missense_Mutation p.R383H 0.23 deleterious(0.04) possibly_damaging(0.633) TCGA-06-0877-01 2 179453343 179453343 G A TTN Missense_Mutation p.R21037C 0.50 TCGA-06-0877-01 2 227661504 227661504 T C IRS1 Missense_Mutation p.R651G 0.46 tolerated(0.06) benign(0.024) TCGA-06-0877-01 2 29386734 29386734 C G CLIP4 Silent p.G524G 0.48 TCGA-06-0877-01 2 74128551 74128551 G A ACTG2 Missense_Mutation p.R38H 0.26 tolerated_low_confidence(0.06) benign(0.073) TCGA-06-0877-01 3 111260937 111260937 G T CD96 5'Flank 0.31 TCGA-06-0877-01 3 123166426 123166426 G A ADCY5 Missense_Mutation p.R323C 0.45 deleterious(0.01) possibly_damaging(0.899) TCGA-06-0877-01 3 129694827 129694827 G A TRH Silent p.R56R 0.36 TCGA-06-0877-01 3 186015248 186015248 T G DGKG Missense_Mutation p.N112T 0.25 tolerated(0.6) benign(0.066) TCGA-06-0877-01 3 27761789 27761789 G A EOMES Silent p.N303N 0.46 TCGA-06-0877-01 3 44685661 44685661 C G ZNF197 Missense_Mutation p.F1013L 0.41 tolerated_low_confidence(0.8) benign(0.002) TCGA-06-0877-01 3 52840313 52840313 C T ITIH3 Silent p.D649D 0.43 TCGA-06-0877-01 3 89468496 89468496 T A EPHA3 Missense_Mutation p.F677Y 0.36 deleterious(0) probably_damaging(0.996) TCGA-06-0877-01 4 183245108 183245108 T G TENM3 5'UTR 0.41 TCGA-06-0877-01 4 38829222 38829222 G A TLR6 Missense_Mutation p.R625W 0.32 tolerated(0.21) possibly_damaging(0.841) TCGA-06-0877-01 4 69696459 69696459 C G UGT2B10 Silent p.T483T 0.32 TCGA-06-0877-01 4 71275346 71275346 G T PROL1 Missense_Mutation p.G101C 0.33 tolerated_low_confidence(0.11) probably_damaging(0.984) TCGA-06-0877-01 4 74365895 74365895 G A AFM Missense_Mutation p.A533T 0.35 tolerated(0.73) benign(0.008) TCGA-06-0877-01 4 90647597 90647597 G A SNCA 3'UTR 0.33 TCGA-06-0877-01 5 160047524 160047524 C T ATP10B Missense_Mutation p.R749H 0.42 deleterious(0.03) probably_damaging(0.973) TCGA-06-0877-01 5 38972038 38972038 C T RICTOR Missense_Mutation p.G305R 0.26 tolerated(0.15) possibly_damaging(0.861) TCGA-06-0877-01 5 5146486 5146486 C T ADAMTS16 Missense_Mutation p.P140L 0.31 tolerated(0.45) benign(0.009) TCGA-06-0877-01 5 67589138 67589138 G A PIK3R1 Missense_Mutation p.G376R 0.32 deleterious(0) probably_damaging(1) TCGA-06-0877-01 6 111210086 111210086 G A AMD1 Missense_Mutation p.R75K 0.34 tolerated(0.08) benign(0.014) TCGA-06-0877-01 6 24502755 24502755 G A ALDH5A1 Missense_Mutation p.R120K 0.37 deleterious(0) probably_damaging(0.999) TCGA-06-0877-01 6 47976593 47976593 C A PTCHD4 Missense_Mutation p.K228N 0.33 tolerated(0.43) benign(0.239) TCGA-06-0877-01 6 49574864 49574864 T G RHAG Silent p.T379T 0.17 TCGA-06-0877-01 6 52850344 52850344 T G GSTA4 Missense_Mutation p.E59D 0.33 deleterious(0.01) probably_damaging(0.977) TCGA-06-0877-01 7 107350617 107350617 A G SLC26A4 Silent p.Q736Q 0.31 TCGA-06-0877-01 7 155599026 155599026 C T SHH Missense_Mutation p.E176K 0.27 deleterious(0) probably_damaging(0.987) TCGA-06-0877-01 7 155599041 155599041 C T SHH Missense_Mutation p.D171N 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-0877-01 7 31614192 31614192 T C CCDC129 Missense_Mutation p.V171A 0.27 deleterious(0.01) possibly_damaging(0.907) TCGA-06-0877-01 8 105160868 105160868 G C RIMS2 Intron 0.34 TCGA-06-0877-01 8 28017799 28017799 G A ELP3 Silent p.L437L 0.38 TCGA-06-0877-01 8 61764695 61764695 A T CHD7 Missense_Mutation p.Q1928L 0.32 probably_damaging(0.966) TCGA-06-0877-01 8 70744582 70744582 G A SLCO5A1 Silent p.S109S 0.29 TCGA-06-0877-01 9 19786746 19786746 A C SLC24A2 Nonsense_Mutation p.L40* 0.50 TCGA-06-0877-01 9 35609460 35609460 G A TESK1 Nonsense_Mutation p.W534* 0.39 TCGA-06-0877-01 X 69479145 69479145 G A P2RY4 Silent p.F110F 0.72 TCGA-06-0878-01 10 105823552 105823552 G A COL17A1 Missense_Mutation p.A264V 0.08 unknown(0) TCGA-06-0878-01 11 1217691 1217691 G A MUC5AC RNA 0.34 TCGA-06-0878-01 11 55873034 55873034 C T OR8H2 Silent p.N172N 0.33 TCGA-06-0878-01 11 67941376 67941390 AATACCTAAAACAGG CCTAAAACAGGA SUV420H1 Splice_Site p.X182_splice 0.21 TCGA-06-0878-01 12 100552613 100552613 A G AC010203.1 5'Flank 0.29 TCGA-06-0878-01 12 109843786 109843786 C T MYO1H Silent p.D287D 0.22 TCGA-06-0878-01 12 112703783 112703783 C T HECTD4 Silent p.E655E 0.07 TCGA-06-0878-01 12 54913072 54913072 C T NCKAP1L Silent p.S527S 0.39 TCGA-06-0878-01 12 81688794 81688794 C T PPFIA2 Silent p.A915A 0.28 TCGA-06-0878-01 14 106068022 106068022 C G IGHE Missense_Mutation p.C15S 0.63 tolerated(0.23) benign(0.07) TCGA-06-0878-01 15 50254197 50254197 C A ATP8B4 Missense_Mutation p.D422Y 0.31 deleterious(0.01) benign(0.226) TCGA-06-0878-01 16 20357449 20357449 G A UMOD Missense_Mutation p.T394M 0.47 tolerated(0.18) benign(0.082) TCGA-06-0878-01 16 315011 315012 GT - ITFG3 Frame_Shift_Del p.S550Rfs*33 0.18 TCGA-06-0878-01 16 84472802 84472802 G A ATP2C2 Silent p.L339L 0.34 TCGA-06-0878-01 18 19780822 19780822 C T GATA6 3'UTR 0.40 TCGA-06-0878-01 19 15989565 15989565 T G CYP4F2 3'UTR 0.35 TCGA-06-0878-01 19 35941725 35941725 C A FFAR2 3'UTR 0.36 TCGA-06-0878-01 19 41292794 41292794 G A RAB4B Missense_Mutation p.G190R 0.12 deleterious(0.04) possibly_damaging(0.884) TCGA-06-0878-01 19 41726597 41726597 C T AXL Missense_Mutation p.R48W 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-06-0878-01 19 45912970 45912970 A G ERCC1 3'Flank 0.45 TCGA-06-0878-01 19 55420770 55420770 G C NCR1 Missense_Mutation p.E174D 0.32 tolerated(0.49) benign(0.003) TCGA-06-0878-01 1 104122114 104122114 A C AMY2B Missense_Mutation p.K510Q 0.08 deleterious(0.01) possibly_damaging(0.9) TCGA-06-0878-01 1 15428142 15428142 G A KAZN Missense_Mutation p.D551N 0.44 deleterious(0.01) probably_damaging(0.994) TCGA-06-0878-01 1 157667597 157667597 T C FCRL3 Silent p.G137G 0.04 TCGA-06-0878-01 1 22206668 22206668 C T HSPG2 Missense_Mutation p.G759S 0.28 probably_damaging(1) TCGA-06-0878-01 1 23707799 23707799 G A TCEA3 3'UTR 0.39 TCGA-06-0878-01 1 249148230 249148230 G T ZNF692 Missense_Mutation p.H358Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-06-0878-01 1 89729595 89729595 G A GBP5 Missense_Mutation p.R396W 0.35 deleterious(0) possibly_damaging(0.773) TCGA-06-0878-01 20 5903131 5903131 G A CHGB Missense_Mutation p.G114D 0.32 tolerated(0.59) benign(0.014) TCGA-06-0878-01 21 31852408 31852408 G A KRTAP19-1 Missense_Mutation p.R77C 0.41 deleterious_low_confidence(0.03) unknown(0) TCGA-06-0878-01 21 32007726 32007726 T A KRTAP20-2 Nonsense_Mutation p.Y48* 0.38 TCGA-06-0878-01 22 18178948 18178948 C T BCL2L13 Missense_Mutation p.T143I 0.52 tolerated(0.42) probably_damaging(0.96) TCGA-06-0878-01 22 37482392 37482392 C T TMPRSS6 Missense_Mutation p.V311I 0.80 deleterious(0.04) benign(0.15) TCGA-06-0878-01 22 47189513 47189513 G A TBC1D22A Missense_Mutation p.D79N 0.07 deleterious(0.04) possibly_damaging(0.703) TCGA-06-0878-01 2 103379126 103379133 TATTTGGA CTATTGGAGAATGACTCCAAT TMEM182 Frame_Shift_Ins p.I72Yfs*40 0.11 TCGA-06-0878-01 2 161025770 161025770 C T ITGB6 Missense_Mutation p.V324M 0.38 deleterious(0.01) benign(0.058) TCGA-06-0878-01 2 196865488 196865488 G A DNAH7 Silent p.D431D 0.36 TCGA-06-0878-01 2 3743415 3743415 G T ALLC Missense_Mutation p.C207F 0.10 deleterious(0) probably_damaging(0.991) TCGA-06-0878-01 3 13672223 13672223 G A FBLN2 Missense_Mutation p.R998H 0.53 tolerated(0.13) probably_damaging(0.975) TCGA-06-0878-01 3 182585181 182585181 T C ATP11B Missense_Mutation p.I546T 0.29 tolerated(0.38) benign(0.007) TCGA-06-0878-01 4 10515205 10515205 C A CLNK Missense_Mutation p.M263I 0.45 tolerated(0.26) benign(0.008) TCGA-06-0878-01 4 1206064 1206064 G C CTBP1 Silent p.P429P 0.44 TCGA-06-0878-01 4 155252747 155252747 C T DCHS2 Missense_Mutation p.E785K 0.32 tolerated(0.35) benign(0.023) TCGA-06-0878-01 5 11022883 11022883 A C CTNND2 Missense_Mutation p.D999E 0.35 tolerated(0.15) benign(0.004) TCGA-06-0878-01 5 140222517 140222517 G A PCDHA8 Silent p.A537A 0.37 TCGA-06-0878-01 5 169122848 169122848 G T DOCK2 Missense_Mutation p.L295F 0.35 tolerated(0.18) benign(0.177) TCGA-06-0878-01 6 132211694 132211694 C A ENPP1 3'UTR 0.35 TCGA-06-0878-01 6 142399906 142399906 C T NMBR Missense_Mutation p.R186H 0.43 tolerated(0.5) benign(0.002) TCGA-06-0878-01 6 55142306 55142306 A G HCRTR2 Silent p.R297R 0.32 TCGA-06-0878-01 7 100350611 100350611 A G ZAN Silent p.K961K 0.09 TCGA-06-0878-01 7 107706946 107706946 C T LAMB4 Missense_Mutation p.R849H 0.24 tolerated(0.22) benign(0.179) TCGA-06-0878-01 7 126698142 126698142 G A GRM8 Intron 0.29 TCGA-06-0878-01 7 31016925 31016925 C T GHRHR Silent p.F378F 0.06 TCGA-06-0878-01 7 55221781 55221781 C T EGFR Silent p.Y275Y 0.29 TCGA-06-0878-01 7 55221796 55221796 C T EGFR Silent p.N280N 0.28 TCGA-06-0878-01 7 55221821 55221821 G A EGFR Missense_Mutation p.A289T 0.03 deleterious(0) probably_damaging(0.981) TCGA-06-0878-01 7 8125829 8125829 T A GLCCI1 Silent p.R435R 0.06 TCGA-06-0878-01 7 82997221 82997221 A C SEMA3E Missense_Mutation p.L670W 0.25 deleterious(0) probably_damaging(1) TCGA-06-0878-01 8 61754431 61754431 G T CHD7 Missense_Mutation p.R1557I 0.07 probably_damaging(0.993) TCGA-06-0878-01 8 69104577 69104577 G A PREX2 Missense_Mutation p.R1474K 0.38 deleterious(0.01) benign(0.001) TCGA-06-0878-01 9 113704320 113704320 A C LPAR1 Silent p.T58T 0.37 TCGA-06-0878-01 9 123675735 123675735 C T TRAF1 Silent p.G192G 0.35 TCGA-06-0878-01 9 127670739 127670739 C T GOLGA1 Missense_Mutation p.E328K 0.35 deleterious(0) possibly_damaging(0.786) TCGA-06-0878-01 X 117054239 117054239 A T KLHL13 Missense_Mutation p.M115K 0.29 deleterious(0) benign(0.353) TCGA-06-0878-01 X 18275064 18275064 G A SCML2 Missense_Mutation p.H454Y 0.14 deleterious(0) probably_damaging(0.952) TCGA-06-0879-01 10 106899184 106899184 C T SORCS3 Silent p.Y414Y 0.55 TCGA-06-0879-01 10 5541186 5541186 C T CALML5 Silent p.A72A 0.56 TCGA-06-0879-01 11 118100589 118100589 T C MPZL3 3'UTR 0.27 TCGA-06-0879-01 11 55653041 55653041 C T TRIM51 Missense_Mutation p.T46M 0.32 tolerated(0.27) benign(0.006) TCGA-06-0879-01 11 86123501 86123501 A G CCDC81 Missense_Mutation p.S431G 0.39 tolerated(0.22) benign(0.001) TCGA-06-0879-01 12 129467737 129467737 A G GLT1D1 3'UTR 0.46 TCGA-06-0879-01 12 130926697 130926697 C T RIMBP2 Silent p.T383T 0.51 TCGA-06-0879-01 12 57863263 57863263 C T GLI1 Missense_Mutation p.S453F 0.31 deleterious(0) probably_damaging(0.997) TCGA-06-0879-01 12 67691247 67691247 G T CAND1 Missense_Mutation p.L184F 0.39 deleterious(0) probably_damaging(0.989) TCGA-06-0879-01 12 86374059 86374059 G A MGAT4C Missense_Mutation p.R149C 0.36 tolerated(0.25) benign(0.002) TCGA-06-0879-01 12 97087577 97087577 A G C12orf55 Silent p.R2114R 0.36 TCGA-06-0879-01 13 113812987 113812987 G A PROZ Missense_Mutation p.V5I 0.40 tolerated_low_confidence(0.91) benign(0) TCGA-06-0879-01 13 29600822 29600822 G T MTUS2 Missense_Mutation p.V673F 0.27 deleterious(0.02) benign(0.413) TCGA-06-0879-01 13 50204952 50204952 G A ARL11 Silent p.K123K 0.39 TCGA-06-0879-01 14 94703972 94703972 C T PPP4R4 Nonsense_Mutation p.R268* 0.35 TCGA-06-0879-01 15 35166951 35166951 A G AQR Missense_Mutation p.S1118P 0.27 deleterious(0.02) possibly_damaging(0.866) TCGA-06-0879-01 15 79750063 79750063 T C KIAA1024 Missense_Mutation p.L525P 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-0879-01 16 81208261 81208261 G A PKD1L2 Missense_Mutation p.R204W 0.50 deleterious_low_confidence(0.01) benign(0.023) TCGA-06-0879-01 16 87873313 87873313 C A SLC7A5 Missense_Mutation p.A312S 0.46 deleterious(0) probably_damaging(0.955) TCGA-06-0879-01 17 65528973 65528973 G A PITPNC1 Missense_Mutation p.R35Q 0.20 tolerated(0.2) benign(0.04) TCGA-06-0879-01 17 7296587 7296587 C T TMEM256-PLSCR3 Missense_Mutation p.R128H 0.19 deleterious(0) probably_damaging(0.997) TCGA-06-0879-01 19 23542219 23542219 G A ZNF91 Missense_Mutation p.P1188S 0.24 benign(0) TCGA-06-0879-01 19 3293492 3293492 G A CELF5 Intron 0.24 TCGA-06-0879-01 19 43773608 43773608 C T PSG9 5'UTR 0.26 TCGA-06-0879-01 19 55624065 55624065 C T PPP1R12C Silent p.V140V 0.24 TCGA-06-0879-01 19 8028639 8028639 G A ELAVL1 Missense_Mutation p.P237S 0.27 tolerated(0.15) benign(0.003) TCGA-06-0879-01 1 103345386 103345386 A G COL11A1 Silent p.N1709N 0.18 TCGA-06-0879-01 1 108995957 108995957 C T NBPF6 Nonsense_Mutation p.R145* 0.29 TCGA-06-0879-01 1 110740739 110740739 A G SLC6A17 Silent p.A619A 0.31 TCGA-06-0879-01 1 143912455 143912455 G A FAM72D 5'UTR 0.23 TCGA-06-0879-01 1 149369376 149369376 T A RP5-998N21.4 3'Flank 0.30 TCGA-06-0879-01 1 152283123 152283123 G A FLG Silent p.H1413H 0.38 TCGA-06-0879-01 1 183542320 183542320 C T NCF2 Silent p.T203T 0.36 TCGA-06-0879-01 1 230314000 230314000 G C GALNT2 Missense_Mutation p.D55H 0.37 tolerated(0.12) benign(0.238) TCGA-06-0879-01 1 236704996 236704996 A G LGALS8 Missense_Mutation p.I170V 0.45 tolerated(0.09) benign(0.209) TCGA-06-0879-01 1 28285085 28285085 G A SMPDL3B Silent p.P368P 0.15 TCGA-06-0879-01 1 92479806 92479806 C A BRDT Missense_Mutation p.T940K 0.40 deleterious(0.01) benign(0.282) TCGA-06-0879-01 20 47309262 47309262 C T PREX1 Silent p.R328R 0.18 TCGA-06-0879-01 21 10906987 10906987 C A TPTE Missense_Mutation p.R525I 0.14 deleterious(0) benign(0.21) TCGA-06-0879-01 21 41033203 41033203 T G B3GALT5 Missense_Mutation p.I239M 0.34 deleterious(0.01) possibly_damaging(0.588) TCGA-06-0879-01 21 45994960 45994960 G A KRTAP10-4 3'UTR 0.33 TCGA-06-0879-01 22 23077328 23077328 G T IGLV2-18 Missense_Mutation p.Q35H 0.37 deleterious_low_confidence(0.02) benign(0.072) TCGA-06-0879-01 22 46708130 46708130 G A GTSE1 Silent p.P285P 0.48 TCGA-06-0879-01 2 111144824 111144824 G T LINC01106 5'Flank 0.19 TCGA-06-0879-01 2 166847871 166847871 T A SCN1A Nonsense_Mutation p.K1972* 0.34 TCGA-06-0879-01 2 179253861 179253861 G A OSBPL6 Missense_Mutation p.C786Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-0879-01 2 179634524 179634524 C A TTN Missense_Mutation p.K2928N 0.32 TCGA-06-0879-01 2 187692829 187692829 C G ZSWIM2 Missense_Mutation p.S595T 0.41 deleterious(0.02) benign(0.005) TCGA-06-0879-01 2 201846441 201846441 C T FAM126B Missense_Mutation p.R382H 0.35 deleterious(0.03) benign(0.006) TCGA-06-0879-01 2 233405386 233405386 C T CHRNG Silent p.T105T 0.31 TCGA-06-0879-01 2 70524589 70524589 G A FAM136A Silent p.T83T 0.05 TCGA-06-0879-01 2 95537709 95537709 G A TEKT4 Missense_Mutation p.A129T 0.32 deleterious(0.03) possibly_damaging(0.832) TCGA-06-0879-01 3 123003491 123003491 C A ADCY5 Missense_Mutation p.M1250I 0.07 tolerated(0.6) benign(0.01) TCGA-06-0879-01 3 130672707 130672707 A G ATP2C1 Missense_Mutation p.T226A 0.35 tolerated(0.29) benign(0.09) TCGA-06-0879-01 3 13978972 13978972 G A FGD5P1 3'Flank 0.20 TCGA-06-0879-01 3 14509599 14509599 C A SLC6A6 Missense_Mutation p.D325E 0.38 deleterious(0) possibly_damaging(0.734) TCGA-06-0879-01 3 151475174 151475174 C T AADACL2 Missense_Mutation p.T333I 0.33 deleterious(0) probably_damaging(1) TCGA-06-0879-01 3 178928081 178928101 AGATTTGCTGAACCCTATTGG CGATTT PIK3CA In_Frame_Del p.E453_G460delinsDDF 0.18 TCGA-06-0879-01 3 4716846 4716846 G A ITPR1 Missense_Mutation p.C883Y 0.37 tolerated(0.07) probably_damaging(0.997) TCGA-06-0879-01 3 9034619 9034619 C T SRGAP3 Silent p.S843S 0.05 TCGA-06-0879-01 5 127728897 127728897 C T FBN2 Missense_Mutation p.G466S 0.37 tolerated(0.09) benign(0.019) TCGA-06-0879-01 5 140481943 140481943 G A PCDHB3 Silent p.A570A 0.31 TCGA-06-0879-01 5 140558277 140558277 C T PCDHB8 Missense_Mutation p.P221L 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-06-0879-01 5 140594357 140594357 C T PCDHB13 Missense_Mutation p.P221L 0.12 deleterious_low_confidence(0.02) possibly_damaging(0.787) TCGA-06-0879-01 5 140782948 140782948 C T PCDHGA9 Silent p.N143N 0.38 TCGA-06-0879-01 5 148687124 148687124 G A AFAP1L1 Missense_Mutation p.R232H 0.28 deleterious(0) probably_damaging(0.996) TCGA-06-0879-01 5 150901299 150901299 C T FAT2 Missense_Mutation p.V3619M 0.09 possibly_damaging(0.838) TCGA-06-0879-01 6 130762663 130762663 G A TMEM200A Missense_Mutation p.G366R 0.35 deleterious(0.03) probably_damaging(0.999) TCGA-06-0879-01 6 90387330 90387330 G A MDN1 Silent p.S4166S 0.34 TCGA-06-0879-01 7 142649600 142649600 G T KEL Missense_Mutation p.P400H 0.23 tolerated(0.18) probably_damaging(0.976) TCGA-06-0879-01 7 143882550 143882550 A T CTAGE4 Nonsense_Mutation p.K652* 0.23 TCGA-06-0879-01 7 150558187 150558187 G A AOC1 Missense_Mutation p.V716M 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-06-0879-01 8 25225732 25225732 C T DOCK5 Silent p.I1083I 0.29 TCGA-06-0879-01 X 146341226 146341226 G A MIR509-3 RNA 0.30 TCGA-06-0879-01 X 148072810 148072810 G A AFF2 Missense_Mutation p.R1295H 0.70 deleterious(0.04) possibly_damaging(0.653) TCGA-06-0881-01 10 89692830 89692830 G A PTEN Missense_Mutation p.C105Y 0.08 deleterious(0) probably_damaging(0.999) TCGA-06-0881-01 16 20994175 20994175 C T DNAH3 Missense_Mutation p.R2576H 0.04 deleterious(0.01) possibly_damaging(0.449) TCGA-06-0881-01 17 10537429 10537429 C T MYH3 Missense_Mutation p.R1476H 0.04 deleterious(0.01) benign(0.003) TCGA-06-0881-01 17 61830101 61830101 C T CCDC47 Missense_Mutation p.V365M 0.05 tolerated(0.16) probably_damaging(0.986) TCGA-06-0881-01 19 56459235 56459235 G A NLRP8 5'UTR 0.06 TCGA-06-0881-01 1 247751819 247751819 G A OR2G2 Missense_Mutation p.R53H 0.05 tolerated(0.55) benign(0.002) TCGA-06-0881-01 1 26360290 26360290 C T EXTL1 Missense_Mutation p.T541I 0.06 deleterious(0) probably_damaging(0.966) TCGA-06-0881-01 2 167141062 167141062 G A SCN9A Silent p.N625N 0.04 TCGA-06-0881-01 2 179438641 179438641 G C TTN Missense_Mutation p.T24073R 0.05 TCGA-06-0881-01 2 179647637 179647637 C T TTN Missense_Mutation p.R999H 0.06 TCGA-06-0881-01 2 238245018 238245018 C T COL6A3 Missense_Mutation p.A2909T 0.09 unknown(0) TCGA-06-0881-01 4 155506815 155506815 T C FGA Missense_Mutation p.Y589C 0.04 deleterious(0.03) possibly_damaging(0.626) TCGA-06-0881-01 4 73962983 73962983 T G ANKRD17 Silent p.S1676S 0.04 TCGA-06-0881-01 5 140563145 140563145 G T PCDHB16 Silent p.V337V 0.10 TCGA-06-0881-01 5 140720392 140720392 G A PCDHGA2 Silent p.S618S 0.03 TCGA-06-0881-01 5 19520824 19520824 G A CDH18 Missense_Mutation p.P485L 0.13 tolerated(0.07) benign(0.211) TCGA-06-0881-01 5 19520825 19520825 G C CDH18 Missense_Mutation p.P485A 0.14 tolerated(1) benign(0.014) TCGA-06-0881-01 6 30690337 30690337 A G TUBB Silent p.E27E 0.07 TCGA-06-0881-01 6 30919762 30919762 C T DPCR1 Missense_Mutation p.T1174M 0.06 tolerated(0.13) possibly_damaging(0.842) TCGA-06-0881-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.18 deleterious(0.02) probably_damaging(0.974) TCGA-06-0881-01 7 77378833 77378833 C T RSBN1L Missense_Mutation p.R266W 0.05 deleterious(0) probably_damaging(0.985) TCGA-06-0881-01 7 82997239 82997239 G A SEMA3E Missense_Mutation p.T664M 0.07 deleterious(0.01) possibly_damaging(0.573) TCGA-06-0881-01 8 2040299 2040299 G A MYOM2 Missense_Mutation p.G652R 0.05 deleterious(0) probably_damaging(0.99) TCGA-06-0881-01 8 2855644 2855644 G C CSMD1 Missense_Mutation p.L2756V 0.04 probably_damaging(0.999) TCGA-06-0881-01 8 95188833 95188833 G A CDH17 Silent p.N120N 0.08 TCGA-06-0881-01 9 107288808 107288808 G A OR13C4 Missense_Mutation p.T228M 0.06 tolerated(0.14) benign(0) TCGA-06-0882-01 10 23297794 23297794 A G ARMC3 Missense_Mutation p.K660R 0.46 tolerated(0.13) benign(0.065) TCGA-06-0882-01 10 89711900 89711900 G A PTEN Missense_Mutation p.R173H 0.33 deleterious(0.03) probably_damaging(0.913) TCGA-06-0882-01 11 65124539 65124539 C G TIGD3 Missense_Mutation p.D420E 0.30 tolerated(1) benign(0.001) TCGA-06-0882-01 11 8752166 8752166 C - ST5 Frame_Shift_Del p.G224Afs*5 0.24 TCGA-06-0882-01 12 53590514 53590514 C T ITGB7 Missense_Mutation p.R222H 0.41 tolerated(0.09) benign(0.028) TCGA-06-0882-01 13 40175282 40175282 G A LHFP Silent p.C24C 0.28 TCGA-06-0882-01 14 104493271 104493271 T C TDRD9 Missense_Mutation p.S1093P 0.07 deleterious(0) probably_damaging(1) TCGA-06-0882-01 15 40596215 40596215 G A PLCB2 Missense_Mutation p.T50M 0.33 deleterious(0.01) possibly_damaging(0.807) TCGA-06-0882-01 15 41810014 41810014 T C RPAP1 Silent p.T1338T 0.28 TCGA-06-0882-01 16 67683169 67683169 C T RLTPR Silent p.D567D 0.28 TCGA-06-0882-01 17 18007951 18007951 A T DRG2 Missense_Mutation p.T304S 0.22 tolerated(1) benign(0.002) TCGA-06-0882-01 17 33749828 33749828 C T SLFN12 Missense_Mutation p.G74R 0.08 deleterious(0) probably_damaging(0.999) TCGA-06-0882-01 17 33749831 33749831 C T SLFN12 Missense_Mutation p.D73N 0.09 tolerated(0.18) probably_damaging(0.996) TCGA-06-0882-01 17 34261842 34261842 G T LYZL6 Silent p.G135G 0.25 TCGA-06-0882-01 17 46703491 46703491 G C HOXB9 Missense_Mutation p.F47L 0.30 tolerated(0.11) possibly_damaging(0.489) TCGA-06-0882-01 17 46703538 46703538 G A HOXB9 Nonsense_Mutation p.Q32* 0.29 TCGA-06-0882-01 17 65041001 65041001 C T CACNG1 Silent p.P75P 0.14 TCGA-06-0882-01 17 72345359 72345359 G A KIF19 Missense_Mutation p.A362T 0.21 tolerated(0.06) benign(0.233) TCGA-06-0882-01 18 42530386 42530386 G T SETBP1 Missense_Mutation p.A361S 0.17 tolerated(0.16) benign(0.014) TCGA-06-0882-01 18 6978310 6978310 C T LAMA1 Silent p.T2025T 0.26 TCGA-06-0882-01 19 42861568 42861568 G A MEGF8 Missense_Mutation p.V1548M 0.16 tolerated(0.06) benign(0.008) TCGA-06-0882-01 19 57669795 57669795 T C DUXA Silent p.L113L 0.27 TCGA-06-0882-01 1 157551332 157551332 C T FCRL4 Missense_Mutation p.R413Q 0.24 tolerated(1) benign(0) TCGA-06-0882-01 1 176661413 176661413 T C PAPPA2 Silent p.T861T 0.25 TCGA-06-0882-01 1 220335581 220335581 A C RAB3GAP2 Missense_Mutation p.L1062V 0.22 tolerated(0.18) benign(0.011) TCGA-06-0882-01 1 55280638 55280638 G A C1orf177 Missense_Mutation p.V326I 0.27 tolerated(0.36) benign(0.014) TCGA-06-0882-01 20 30070268 30070268 G A REM1 Missense_Mutation p.R201H 0.20 deleterious(0) probably_damaging(0.993) TCGA-06-0882-01 21 45826547 45826547 C A TRPM2 Missense_Mutation p.A954D 0.24 deleterious(0) probably_damaging(0.988) TCGA-06-0882-01 2 179463526 179463526 C T TTN Missense_Mutation p.V18971M 0.22 TCGA-06-0882-01 2 211469880 211469880 G C CPS1 Missense_Mutation p.E637Q 0.26 deleterious(0) probably_damaging(0.963) TCGA-06-0882-01 2 227917071 227917071 G A COL4A4 Missense_Mutation p.T973I 0.08 unknown(0) TCGA-06-0882-01 2 26686908 26686908 C T OTOF Missense_Mutation p.R1676H 0.22 deleterious(0.04) possibly_damaging(0.507) TCGA-06-0882-01 3 1427473 1427473 A G CNTN6 Missense_Mutation p.K899R 0.24 tolerated(0.22) benign(0.041) TCGA-06-0882-01 3 46414783 46414783 C T CCR5 Silent p.V130V 0.22 TCGA-06-0882-01 3 52543899 52543899 C T STAB1 Silent p.V787V 0.28 TCGA-06-0882-01 4 185941817 185941817 C T HELT Missense_Mutation p.P292L 0.26 deleterious(0) benign(0.147) TCGA-06-0882-01 4 55984940 55984940 C T KDR Nonsense_Mutation p.W63* 0.22 TCGA-06-0882-01 6 146350638 146350638 C G GRM1 5'UTR 0.16 TCGA-06-0882-01 6 18213891 18213891 C A KDM1B Missense_Mutation p.A431D 0.23 deleterious(0) unknown(0) TCGA-06-0882-01 6 33232605 33232605 G A VPS52 Missense_Mutation p.R452W 0.23 deleterious(0) probably_damaging(0.995) TCGA-06-0882-01 6 50810943 50810943 C A TFAP2B Silent p.A407A 0.04 TCGA-06-0882-01 7 100466151 100466151 C T TRIP6 Missense_Mutation p.T133M 0.14 tolerated(0.15) benign(0.003) TCGA-06-0882-01 7 126086220 126086220 G A GRM8 Silent p.G879G 0.21 TCGA-06-0882-01 7 24331369 24331369 C T NPY 3'UTR 0.17 TCGA-06-0882-01 8 37732071 37732071 G A RAB11FIP1 Silent p.S528S 0.24 TCGA-06-0882-01 9 74360246 74360246 G A TMEM2 Missense_Mutation p.T241M 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-0882-01 X 107160914 107160914 G T MID2 Missense_Mutation p.E460D 0.05 tolerated(0.63) benign(0) TCGA-06-0939-01 10 50532018 50532018 C T C10orf71 Silent p.N476N 0.50 TCGA-06-0939-01 10 5567506 5567506 G A CALML3 3'UTR 0.55 TCGA-06-0939-01 11 107501263 107501263 G A ELMOD1 Silent p.P46P 0.39 TCGA-06-0939-01 11 108302504 108302504 C T C11orf65 Missense_Mutation p.R48H 0.21 tolerated(0.33) benign(0.009) TCGA-06-0939-01 11 56344526 56344526 C T OR5M10 Silent p.A224A 0.26 TCGA-06-0939-01 11 63072232 63072232 C T SLC22A10 Missense_Mutation p.T490M 0.32 tolerated(0.29) benign(0.028) TCGA-06-0939-01 11 96075000 96075000 C G MAML2 Silent p.A20A 0.12 TCGA-06-0939-01 12 117977618 117977618 C T KSR2 Silent p.S531S 0.27 TCGA-06-0939-01 12 28459762 28459762 G A CCDC91 Missense_Mutation p.V119M 0.27 tolerated(0.24) benign(0.017) TCGA-06-0939-01 12 53722081 53722081 C G SP7 Missense_Mutation p.G382A 0.18 tolerated_low_confidence(0.38) benign(0.002) TCGA-06-0939-01 12 5603799 5603799 C T NTF3 Missense_Mutation p.A153V 0.25 deleterious(0.05) probably_damaging(0.939) TCGA-06-0939-01 12 6946946 6946946 T A LEPREL2 Missense_Mutation p.C587S 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-0939-01 13 28971149 28971149 T C FLT1 Missense_Mutation p.I536M 0.04 tolerated(0.31) benign(0.004) TCGA-06-0939-01 13 48953730 48953730 C T RB1 Nonsense_Mutation p.R445* 0.38 TCGA-06-0939-01 13 98641352 98641352 A T IPO5 Missense_Mutation p.K152M 0.26 deleterious(0.01) probably_damaging(0.996) TCGA-06-0939-01 14 23820969 23820969 G A SLC22A17 Silent p.P121P 0.32 TCGA-06-0939-01 14 44975096 44975096 A G FSCB Silent p.A365A 0.30 TCGA-06-0939-01 14 71444226 71444226 G A PCNX Missense_Mutation p.R391Q 0.32 deleterious(0.01) probably_damaging(0.997) TCGA-06-0939-01 14 76964704 76964704 C T ESRRB Missense_Mutation p.T402M 0.31 deleterious(0.04) probably_damaging(0.996) TCGA-06-0939-01 14 99640778 99640778 C T BCL11B Missense_Mutation p.E799K 0.39 deleterious(0) benign(0.024) TCGA-06-0939-01 15 41046948 41046948 C T RMDN3 Missense_Mutation p.A12T 0.12 tolerated(0.45) unknown(0) TCGA-06-0939-01 15 41146113 41146113 C T SPINT1 Missense_Mutation p.A316V 0.31 tolerated(0.67) benign(0) TCGA-06-0939-01 15 43748820 43748820 C T TP53BP1 Silent p.E662E 0.29 TCGA-06-0939-01 16 20498185 20498185 G C ACSM2A 3'UTR 0.22 TCGA-06-0939-01 16 7629856 7629856 C A RBFOX1 Silent p.P136P 0.04 TCGA-06-0939-01 16 77401546 77401546 G T ADAMTS18 Missense_Mutation p.N190K 0.05 deleterious(0.04) benign(0.366) TCGA-06-0939-01 17 29061859 29061859 T C CTD-2349P21.5 3'Flank 0.24 TCGA-06-0939-01 17 3336801 3336801 C T OR1E2 Missense_Mutation p.S112N 0.31 tolerated(0.65) benign(0.008) TCGA-06-0939-01 17 34432750 34432750 G A CCL4 3'UTR 0.31 TCGA-06-0939-01 17 3486725 3486725 C G SHPK Splice_Site p.X462_splice 0.22 TCGA-06-0939-01 17 37295949 37295949 G T PLXDC1 Silent p.T71T 0.22 TCGA-06-0939-01 17 39661434 39661434 G A KRT13 Silent p.R123R 0.32 TCGA-06-0939-01 17 53398080 53398080 G A HLF Missense_Mutation p.R243H 0.27 deleterious(0) probably_damaging(1) TCGA-06-0939-01 17 60679467 60679467 G A TLK2 Silent p.S595S 0.23 TCGA-06-0939-01 17 67181653 67181653 G A ABCA10 Missense_Mutation p.T821M 0.33 tolerated(0.08) benign(0.096) TCGA-06-0939-01 18 21492813 21492813 A G LAMA3 Missense_Mutation p.N2433D 0.28 benign(0.014) TCGA-06-0939-01 19 14682837 14682837 C G NDUFB7 5'UTR 0.27 TCGA-06-0939-01 19 40580618 40580618 T C ZNF780A Silent p.K578K 0.28 TCGA-06-0939-01 19 49633717 49633717 C G PPFIA3 Missense_Mutation p.A247G 0.07 tolerated(0.34) benign(0.004) TCGA-06-0939-01 19 5748191 5748191 C T CATSPERD Missense_Mutation p.R277W 0.26 tolerated(0.15) benign(0.01) TCGA-06-0939-01 1 152287099 152287099 G T FLG Missense_Mutation p.S88Y 0.40 benign(0.014) TCGA-06-0939-01 1 154918742 154918742 T G PBXIP1 Silent p.R470R 0.30 TCGA-06-0939-01 1 158615169 158615169 G A SPTA1 Missense_Mutation p.R1335C 0.29 deleterious(0) probably_damaging(0.921) TCGA-06-0939-01 1 160250017 160250017 C T PEX19 Missense_Mutation p.S205N 0.30 tolerated(0.25) benign(0.151) TCGA-06-0939-01 1 176563773 176563773 G A PAPPA2 Missense_Mutation p.D345N 0.36 deleterious(0) probably_damaging(0.995) TCGA-06-0939-01 1 206942020 206942020 G A IL10 Silent p.N166N 0.23 TCGA-06-0939-01 1 61869812 61869812 C T NFIA Missense_Mutation p.P416L 0.19 deleterious(0) possibly_damaging(0.847) TCGA-06-0939-01 20 13695473 13695473 T C ESF1 3'UTR 0.33 TCGA-06-0939-01 20 50407987 50407987 C T SALL4 Silent p.Q345Q 0.28 TCGA-06-0939-01 20 61942767 61942767 C T COL20A1 Missense_Mutation p.A472V 0.33 tolerated(0.21) possibly_damaging(0.605) TCGA-06-0939-01 22 17072541 17072541 G A CCT8L2 Silent p.D300D 0.38 TCGA-06-0939-01 2 113940279 113940279 C T PSD4 Silent p.D82D 0.36 TCGA-06-0939-01 2 168107813 168107813 G A XIRP2 Missense_Mutation p.R3304H 0.31 benign(0.006) TCGA-06-0939-01 2 170134318 170134318 C T LRP2 Missense_Mutation p.R570H 0.27 probably_damaging(0.999) TCGA-06-0939-01 2 179399105 179399108 TCTT - TTN Frame_Shift_Del p.R34079Sfs*9 0.28 TCGA-06-0939-01 2 179544077 179544077 G A TTN Missense_Mutation p.P11244L 0.26 TCGA-06-0939-01 2 89100625 89100625 G T ANKRD36BP2 RNA 0.05 TCGA-06-0939-01 3 12447429 12447429 C T PPARG Missense_Mutation p.A223V 0.26 deleterious(0.03) possibly_damaging(0.587) TCGA-06-0939-01 3 138669148 138669148 C T C3orf72 Missense_Mutation p.R88W 0.34 deleterious_low_confidence(0.02) benign(0.09) TCGA-06-0939-01 3 151598459 151598459 T C SUCNR1 Missense_Mutation p.I43T 0.30 tolerated(0.49) benign(0.01) TCGA-06-0939-01 4 156721201 156721201 G T GUCY1B3 Nonsense_Mutation p.E384* 0.30 TCGA-06-0939-01 4 266352 266352 A G ZNF732 Silent p.L98L 0.09 TCGA-06-0939-01 5 140166149 140166149 C T PCDHA1 Missense_Mutation p.R92C 0.06 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-0939-01 5 178581109 178581109 G A ADAMTS2 Silent p.A441A 0.33 TCGA-06-0939-01 5 5464090 5464090 C G KIAA0947 Missense_Mutation p.P1548R 0.11 deleterious(0) probably_damaging(0.973) TCGA-06-0939-01 5 70806902 70806902 C A BDP1 Missense_Mutation p.T1328N 0.34 deleterious(0.01) probably_damaging(0.999) TCGA-06-0939-01 5 75428010 75428010 C T SV2C Silent p.C145C 0.28 TCGA-06-0939-01 5 94749868 94749868 G A FAM81B Missense_Mutation p.V171I 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-06-0939-01 6 100896122 100896122 C T SIM1 Silent p.A250A 0.16 TCGA-06-0939-01 6 107008787 107008787 C T AIM1 Nonsense_Mutation p.R1581* 0.25 TCGA-06-0939-01 6 158357061 158357061 G T SNX9 Missense_Mutation p.V478L 0.24 deleterious(0.05) probably_damaging(0.998) TCGA-06-0939-01 6 49419405 49419405 C T MUT Missense_Mutation p.R369H 0.25 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-06-0939-01 6 56963890 56963890 T C ZNF451 Missense_Mutation p.I46T 0.27 deleterious(0) probably_damaging(0.985) TCGA-06-0939-01 7 100679249 100679249 A G MUC17 Missense_Mutation p.S1518G 0.20 unknown(0) TCGA-06-0939-01 7 23827708 23827708 A G STK31 Missense_Mutation p.E866G 0.15 deleterious(0) possibly_damaging(0.9) TCGA-06-0939-01 7 40356417 40356417 G A SUGCT Missense_Mutation p.R267H 0.13 deleterious(0) probably_damaging(1) TCGA-06-0939-01 8 142231734 142231734 G A SLC45A4 Silent p.L73L 0.28 TCGA-06-0939-01 8 145746502 145746502 G C LRRC14 Missense_Mutation p.E374D 0.30 tolerated(0.1) benign(0.07) TCGA-06-0939-01 8 36768588 36768588 C T KCNU1 Silent p.I824I 0.22 TCGA-06-0939-01 8 53085003 53085003 C T ST18 Missense_Mutation p.V140I 0.23 tolerated(0.34) benign(0.016) TCGA-06-0939-01 8 59548070 59548070 G A NSMAF Missense_Mutation p.S93L 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-0939-01 8 70744273 70744273 G A SLCO5A1 Silent p.F212F 0.34 TCGA-06-0939-01 9 107298585 107298585 C T OR13C3 Silent p.A170A 0.03 TCGA-06-0939-01 9 74863239 74863239 C T GDA Missense_Mutation p.P449L 0.29 deleterious(0.01) probably_damaging(0.979) TCGA-06-0939-01 X 102885331 102885331 C T TCEAL1 3'UTR 0.21 TCGA-06-0939-01 X 103499539 103499539 C T ESX1 5'UTR 0.29 TCGA-06-0939-01 X 110931117 110931117 C T ALG13 Intron 0.19 TCGA-06-0939-01 X 119005259 119005259 C T RNF113A Silent p.A106A 0.31 TCGA-06-0939-01 X 129759313 129759313 C A ENOX2 Missense_Mutation p.G603V 0.06 tolerated(0.07) probably_damaging(1) TCGA-06-0939-01 X 144904765 144904765 G A SLITRK2 Silent p.R274R 0.27 TCGA-06-0939-01 X 153229664 153229664 G T HCFC1 Silent p.L138L 0.22 TCGA-06-0939-01 X 15364311 15364311 G A FIGF Missense_Mutation p.R337C 0.29 deleterious(0.05) benign(0.016) TCGA-06-0939-01 X 23397772 23397772 T C PTCHD1 Missense_Mutation p.I139T 0.35 deleterious(0.01) benign(0.122) TCGA-06-0939-01 X 49455937 49455937 T C PAGE1 Silent p.P69P 0.25 TCGA-06-0939-01 X 55650496 55650496 G A FOXR2 Missense_Mutation p.E118K 0.34 tolerated(0.14) benign(0.142) TCGA-06-0939-01 X 77912605 77912605 C T ZCCHC5 Missense_Mutation p.R438H 0.35 tolerated(0.34) benign(0.001) TCGA-06-0939-01 X 89176957 89176957 G A TGIF2LX 5'UTR 0.24 TCGA-06-1804-01 10 26305807 26305807 G A MYO3A Silent p.P189P 0.57 TCGA-06-1804-01 10 89653833 89653833 G A PTEN Missense_Mutation p.G44D 0.75 deleterious(0) possibly_damaging(0.66) TCGA-06-1804-01 11 18231721 18231721 G C RP11-113D6.10 3'UTR 0.30 TCGA-06-1804-01 11 285212 285212 G T NLRP6 Missense_Mutation p.A863S 0.56 tolerated(0.22) benign(0.017) TCGA-06-1804-01 11 31824337 31824337 C A PAX6 Missense_Mutation p.R19L 0.09 deleterious(0) probably_damaging(1) TCGA-06-1804-01 11 4976634 4976634 A T OR51A2 Missense_Mutation p.F104I 0.85 deleterious(0.01) benign(0.414) TCGA-06-1804-01 11 5080295 5080295 T C OR52E2 Missense_Mutation p.H188R 0.29 tolerated(1) benign(0) TCGA-06-1804-01 11 59224437 59224437 G T OR4D6 Missense_Mutation p.D2Y 0.37 deleterious(0) benign(0.173) TCGA-06-1804-01 11 60470943 60470943 C T MS4A8 Silent p.Y104Y 0.38 TCGA-06-1804-01 11 60739382 60739382 C A CD6 Silent p.L15L 0.43 TCGA-06-1804-01 11 61079499 61079499 C G DDB1 Missense_Mutation p.K709N 0.33 deleterious(0) probably_damaging(0.995) TCGA-06-1804-01 11 66190325 66190325 G A NPAS4 Missense_Mutation p.G204D 0.41 tolerated(0.07) benign(0.203) TCGA-06-1804-01 11 78380034 78380034 G C TENM4 Missense_Mutation p.F2452L 0.32 deleterious(0) possibly_damaging(0.573) TCGA-06-1804-01 11 89405127 89405127 C G FOLH1B RNA 0.44 TCGA-06-1804-01 12 105198885 105198885 G A SLC41A2 3'UTR 0.33 TCGA-06-1804-01 12 1291107 1291107 G A ERC1 Missense_Mutation p.R631H 0.32 tolerated(0.08) probably_damaging(0.987) TCGA-06-1804-01 12 32138039 32138039 G C KIAA1551 Missense_Mutation p.D1384H 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-06-1804-01 12 50831593 50831593 G A LARP4 Missense_Mutation p.R204K 0.33 deleterious(0) possibly_damaging(0.748) TCGA-06-1804-01 12 6426747 6426747 T C PLEKHG6 Missense_Mutation p.M301T 0.43 tolerated(0.39) benign(0.002) TCGA-06-1804-01 12 76783481 76783481 G A OSBPL8 Silent p.P432P 0.32 TCGA-06-1804-01 12 8192492 8192492 G A FOXJ2 Missense_Mutation p.A22T 0.10 deleterious(0) probably_damaging(0.98) TCGA-06-1804-01 12 97052014 97052014 C A C12orf55 Missense_Mutation p.P1784T 0.43 deleterious(0) probably_damaging(0.974) TCGA-06-1804-01 14 105353636 105353636 G A CEP170B Missense_Mutation p.M1020I 0.39 tolerated(0.28) benign(0.002) TCGA-06-1804-01 14 21876716 21876716 T C CHD8 Splice_Site p.X829_splice 0.43 TCGA-06-1804-01 14 24538046 24538046 A G LRRC16B Missense_Mutation p.R1285G 0.27 tolerated_low_confidence(0.06) unknown(0) TCGA-06-1804-01 16 10274212 10274212 G A GRIN2A Silent p.R19R 0.17 TCGA-06-1804-01 16 1417320 1417320 C T UNKL Missense_Mutation p.E604K 0.50 deleterious(0) benign(0.333) TCGA-06-1804-01 16 23505700 23505700 C T GGA2 Splice_Site p.X59_splice 0.07 TCGA-06-1804-01 16 2369841 2369841 C T ABCA3 Missense_Mutation p.G205E 0.44 deleterious(0.01) possibly_damaging(0.896) TCGA-06-1804-01 16 57017290 57017290 C T CETP Silent p.F458F 0.48 TCGA-06-1804-01 16 57609404 57609404 C T GPR114 Missense_Mutation p.A514V 0.35 tolerated(0.16) benign(0.037) TCGA-06-1804-01 16 7383063 7383063 G A RBFOX1 Missense_Mutation p.A21T 0.31 tolerated_low_confidence(0.84) possibly_damaging(0.712) TCGA-06-1804-01 17 21318735 21318735 C T KCNJ12 Silent p.G27G 0.09 TCGA-06-1804-01 17 34313606 34313606 C A CCL14 Splice_Site p.X27_splice 0.38 TCGA-06-1804-01 17 46148722 46148722 C G CBX1 3'UTR 0.38 TCGA-06-1804-01 17 62144066 62144066 C T ERN1 Silent p.P269P 0.32 TCGA-06-1804-01 17 62758709 62758709 G A hsa-mir-6080 RNA 0.22 TCGA-06-1804-01 17 73096774 73096774 G A SLC16A5 Missense_Mutation p.S339N 0.41 deleterious(0) probably_damaging(0.988) TCGA-06-1804-01 17 77081747 77081747 C T ENGASE Silent p.L582L 0.14 TCGA-06-1804-01 17 8658884 8658884 C T SPDYE4 Missense_Mutation p.G147S 0.40 tolerated(0.16) probably_damaging(0.983) TCGA-06-1804-01 17 8784088 8784088 C T PIK3R5 Silent p.P837P 0.34 TCGA-06-1804-01 18 52604167 52604167 C T CCDC68 Missense_Mutation p.G123E 0.39 deleterious(0) probably_damaging(1) TCGA-06-1804-01 18 67365777 67365777 T A DOK6 Missense_Mutation p.S183T 0.16 deleterious(0.02) possibly_damaging(0.593) TCGA-06-1804-01 19 12461021 12461021 G A ZNF442 Missense_Mutation p.P460S 0.39 deleterious(0.02) possibly_damaging(0.468) TCGA-06-1804-01 19 45998164 45998164 C T RTN2 Missense_Mutation p.R60Q 0.38 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-06-1804-01 19 49686170 49686170 C T TRPM4 Silent p.F533F 0.20 TCGA-06-1804-01 1 111439300 111439300 C T CD53 Missense_Mutation p.T150M 0.31 tolerated(0.09) possibly_damaging(0.735) TCGA-06-1804-01 1 118558655 118558655 C A SPAG17 Missense_Mutation p.G1407V 0.45 deleterious(0) probably_damaging(0.999) TCGA-06-1804-01 1 152275641 152275641 G A FLG Silent p.R3907R 0.36 TCGA-06-1804-01 1 155161953 155161953 T C MUC1 Silent p.V60V 0.44 TCGA-06-1804-01 1 155870206 155870206 G C RIT1 Missense_Mutation p.F228L 0.34 tolerated(0.2) benign(0.002) TCGA-06-1804-01 1 156503843 156503843 G A IQGAP3 Silent p.P1277P 0.38 TCGA-06-1804-01 1 160607074 160607074 G A SLAMF1 Missense_Mutation p.R108W 0.39 deleterious(0) possibly_damaging(0.693) TCGA-06-1804-01 1 17316634 17316634 C T ATP13A2 Silent p.V800V 0.33 TCGA-06-1804-01 1 19166669 19166669 G A TAS1R2 Silent p.I648I 0.42 TCGA-06-1804-01 1 21009290 21009290 G A KIF17 Silent p.Y773Y 0.39 TCGA-06-1804-01 1 35227336 35227336 G A GJB4 Missense_Mutation p.V161M 0.41 deleterious(0.05) benign(0.407) TCGA-06-1804-01 20 46318884 46318884 G A SULF2 Silent p.N241N 0.42 TCGA-06-1804-01 20 60791774 60791774 G A HRH3 Missense_Mutation p.T209M 0.43 deleterious(0.04) probably_damaging(0.989) TCGA-06-1804-01 21 47535812 47535812 G A COL6A2 Silent p.P276P 0.31 TCGA-06-1804-01 22 38119624 38119624 C A TRIOBP Missense_Mutation p.P354H 0.61 deleterious_low_confidence(0.01) benign(0.073) TCGA-06-1804-01 22 44287074 44287074 C A PNPLA5 Missense_Mutation p.Q98H 0.75 tolerated(0.09) benign(0.005) TCGA-06-1804-01 2 209179975 209179975 C G PIKFYVE Missense_Mutation p.L629V 0.07 tolerated(0.13) probably_damaging(0.999) TCGA-06-1804-01 2 218749762 218749762 G T TNS1 Missense_Mutation p.F289L 0.40 deleterious(0) probably_damaging(0.997) TCGA-06-1804-01 2 231740464 231740464 G A ITM2C Missense_Mutation p.V131M 0.39 deleterious(0) probably_damaging(0.941) TCGA-06-1804-01 2 238275697 238275697 G C COL6A3 Nonsense_Mutation p.Y1711* 0.37 TCGA-06-1804-01 3 10387071 10387071 C T ATP2B2 Silent p.T900T 0.20 TCGA-06-1804-01 3 113169336 113169336 G T SPICE1 Missense_Mutation p.P724T 0.04 tolerated(0.07) possibly_damaging(0.628) TCGA-06-1804-01 3 114057754 114057754 A C ZBTB20 3'UTR 0.48 TCGA-06-1804-01 3 128696988 128696988 T C KIAA1257 Silent p.E236E 0.37 TCGA-06-1804-01 3 137717743 137717743 C T CLDN18 Silent p.F11F 0.31 TCGA-06-1804-01 3 155203313 155203313 C T PLCH1 Missense_Mutation p.D944N 0.41 deleterious(0.01) possibly_damaging(0.786) TCGA-06-1804-01 3 179526143 179526143 C T PEX5L Missense_Mutation p.G479S 0.36 deleterious(0) probably_damaging(1) TCGA-06-1804-01 3 183823993 183823993 G A HTR3E Missense_Mutation p.V361M 0.38 tolerated(0.13) benign(0.148) TCGA-06-1804-01 4 114277204 114277204 A T ANK2 Missense_Mutation p.K2477M 0.23 probably_damaging(0.978) TCGA-06-1804-01 4 123374886 123374886 G A IL2 Silent p.N110N 0.39 TCGA-06-1804-01 4 155719190 155719190 C T RBM46 Nonsense_Mutation p.R127* 0.40 TCGA-06-1804-01 4 156632019 156632019 G A GUCY1A3 Silent p.S234S 0.33 TCGA-06-1804-01 4 96199412 96199412 C T UNC5C Missense_Mutation p.E198K 0.45 deleterious(0.01) possibly_damaging(0.791) TCGA-06-1804-01 5 140256671 140256671 C T PCDHA12 Silent p.R538R 0.39 TCGA-06-1804-01 5 146030195 146030195 A T PPP2R2B Silent p.S183S 0.38 TCGA-06-1804-01 5 156589483 156589483 A G FAM71B Missense_Mutation p.I598T 0.38 deleterious(0.02) benign(0.043) TCGA-06-1804-01 5 26885950 26885950 C T CDH9 Missense_Mutation p.R552Q 0.37 tolerated(0.2) benign(0.007) TCGA-06-1804-01 5 5464633 5464633 G T KIAA0947 Missense_Mutation p.G1729V 0.33 deleterious(0) probably_damaging(1) TCGA-06-1804-01 6 110300407 110300407 C T GPR6 Missense_Mutation p.P31L 0.41 tolerated_low_confidence(0.52) benign(0.001) TCGA-06-1804-01 6 43403588 43403588 C T ABCC10 Missense_Mutation p.R570W 0.42 deleterious(0) probably_damaging(0.991) TCGA-06-1804-01 6 51523897 51523897 C T PKHD1 Missense_Mutation p.G3676E 0.42 tolerated(0.94) benign(0.002) TCGA-06-1804-01 6 87865454 87865454 G T ZNF292 Missense_Mutation p.D49Y 0.09 deleterious(0) benign(0.127) TCGA-06-1804-01 7 101256837 101256837 G A MYL10 Missense_Mutation p.A200V 0.23 tolerated(0.06) benign(0.035) TCGA-06-1804-01 7 102614045 102614045 C T FBXL13 Intron 0.20 TCGA-06-1804-01 7 121653409 121653409 T A PTPRZ1 Missense_Mutation p.L1437I 0.06 tolerated_low_confidence(0.11) benign(0.12) TCGA-06-1804-01 7 157046771 157046771 C T UBE3C Missense_Mutation p.R940C 0.53 deleterious(0) probably_damaging(0.946) TCGA-06-1804-01 7 55221722 55221722 G T EGFR Missense_Mutation p.D256Y 0.15 deleterious(0) probably_damaging(1) TCGA-06-1804-01 7 82387805 82387805 A T PCLO 3'UTR 0.17 TCGA-06-1804-01 8 110588241 110588241 C A SYBU Nonsense_Mutation p.E296* 0.47 TCGA-06-1804-01 8 24200682 24200682 C A ADAM28 Nonsense_Mutation p.C633* 0.50 TCGA-06-1804-01 8 25203034 25203034 C T DOCK5 Silent p.S887S 0.34 TCGA-06-1804-01 8 39695716 39695716 C T ADAM2 5'UTR 0.45 TCGA-06-1804-01 8 56699365 56699365 A G TGS1 Missense_Mutation p.D303G 0.21 tolerated(0.5) benign(0.001) TCGA-06-1804-01 8 86574445 86574445 G A REXO1L1P Missense_Mutation p.R428C 0.15 deleterious(0.05) benign(0.014) TCGA-06-1804-01 9 140904511 140904511 C T CACNA1B Silent p.N714N 0.32 TCGA-06-1804-01 9 84609494 84609494 A G SPATA31D1 Missense_Mutation p.E1370G 0.34 tolerated(0.3) benign(0.002) TCGA-06-1804-01 X 151283685 151283685 T A RP11-1007I13.4 RNA 0.39 TCGA-06-1804-01 X 22112133 22112133 T C PHEX Silent p.D255D 0.06 TCGA-06-1804-01 X 46618211 46618211 A T SLC9A7 Missense_Mutation p.I85N 0.30 deleterious(0) probably_damaging(0.98) TCGA-06-1804-01 X 53600812 53600812 A G HUWE1 Silent p.T2070T 0.04 TCGA-06-1804-01 X 8138151 8138151 C T VCX2 Silent p.L114L 0.03 TCGA-06-1804-01 X 84634246 84634246 G A POF1B Missense_Mutation p.R72W 0.36 deleterious_low_confidence(0.01) possibly_damaging(0.785) TCGA-06-1806-01 11 134253884 134253884 C T B3GAT1 Missense_Mutation p.R104H 0.19 deleterious(0) probably_damaging(0.998) TCGA-06-1806-01 11 45273992 45273992 C T SYT13 Missense_Mutation p.E276K 0.12 tolerated(0.6) benign(0.005) TCGA-06-1806-01 11 45927211 45927211 A G MAPK8IP1 Missense_Mutation p.Q692R 0.11 tolerated(0.07) benign(0.446) TCGA-06-1806-01 11 48185118 48185118 C T PTPRJ Missense_Mutation p.R1223C 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-1806-01 12 41967365 41967365 C T PDZRN4 Silent p.D928D 0.30 TCGA-06-1806-01 12 52652169 52652169 C A KRT121P RNA 0.09 TCGA-06-1806-01 12 85459127 85459127 C T LRRIQ1 Missense_Mutation p.R827C 0.37 deleterious(0.03) benign(0.062) TCGA-06-1806-01 12 91502172 91502172 C G LUM Missense_Mutation p.Q195H 0.11 tolerated(0.2) benign(0.117) TCGA-06-1806-01 14 101439032 101439032 G A SNORD114-15 RNA 0.25 TCGA-06-1806-01 15 86286791 86286791 G A AKAP13 Silent p.S2713S 0.16 TCGA-06-1806-01 16 2256651 2256651 G - MLST8 Frame_Shift_Del p.D113Tfs*15 0.27 TCGA-06-1806-01 18 77133909 77133909 A T ATP9B Missense_Mutation p.M1028L 0.11 deleterious(0.05) benign(0.1) TCGA-06-1806-01 19 14224979 14224979 G A PRKACA Intron 0.27 TCGA-06-1806-01 19 2216705 2216705 G A DOT1L Silent p.R783R 0.29 TCGA-06-1806-01 19 50059597 50059597 G A NOSIP Missense_Mutation p.R271C 0.26 deleterious(0.01) possibly_damaging(0.54) TCGA-06-1806-01 19 5867010 5867010 G C FUT5 Missense_Mutation p.P243A 0.20 tolerated(0.06) possibly_damaging(0.841) TCGA-06-1806-01 1 248224277 248224277 T A OR2L3 Silent p.I98I 0.14 TCGA-06-1806-01 1 27106176 27106176 T G ARID1A Missense_Mutation p.S1929R 0.04 benign(0.391) TCGA-06-1806-01 20 18165284 18165284 A C CSRP2BP Missense_Mutation p.S675R 0.21 deleterious(0) probably_damaging(0.993) TCGA-06-1806-01 20 43851863 43851863 T A SEMG2 Silent p.S530S 0.07 TCGA-06-1806-01 21 34809223 34809223 T C IFNGR2 Missense_Mutation p.I323T 0.05 deleterious(0) benign(0.372) TCGA-06-1806-01 22 26887547 26887547 T C SRRD Missense_Mutation p.I310T 0.31 tolerated(0.97) benign(0.002) TCGA-06-1806-01 2 69240637 69240637 C T ANTXR1 Silent p.A2A 0.25 TCGA-06-1806-01 2 79384326 79384326 C T REG3A 3'UTR 0.08 TCGA-06-1806-01 4 148545074 148545074 A G TMEM184C Silent p.L71L 0.29 TCGA-06-1806-01 5 140554787 140554787 T G PCDHB7 Missense_Mutation p.L791V 0.35 deleterious_low_confidence(0.03) benign(0.046) TCGA-06-1806-01 5 140683481 140683481 G A SLC25A2 5'UTR 0.42 TCGA-06-1806-01 7 105909693 105909693 T C NAMPT Missense_Mutation p.I171M 0.09 deleterious(0.01) probably_damaging(0.909) TCGA-06-1806-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.41 deleterious(0) probably_damaging(0.967) TCGA-06-1806-01 7 142481845 142481845 A G PRSS3P2 RNA 0.13 TCGA-06-1806-01 7 63538420 63538420 C T ZNF727 Silent p.N331N 0.30 TCGA-06-1806-01 7 81591237 81591237 C A CACNA2D1 Missense_Mutation p.G980V 0.08 tolerated(0.13) probably_damaging(0.949) TCGA-06-1806-01 8 70585394 70585394 T C SLCO5A1 Missense_Mutation p.I753V 0.26 tolerated(0.21) benign(0.053) TCGA-06-1806-01 9 139108556 139108556 G A QSOX2 Missense_Mutation p.R367W 0.32 deleterious(0) probably_damaging(0.997) TCGA-06-1806-01 X 17745854 17745854 A G NHS Missense_Mutation p.M1189V 0.26 tolerated_low_confidence(0.53) benign(0.001) TCGA-06-2557-01 10 105953531 105953531 T C WDR96 Intron 0.20 TCGA-06-2557-01 10 107015536 107015536 T G SORCS3 Missense_Mutation p.V1105G 0.53 deleterious(0) possibly_damaging(0.887) TCGA-06-2557-01 10 5014817 5014817 T A AKR1C1 Missense_Mutation p.L241H 0.16 deleterious(0) probably_damaging(0.997) TCGA-06-2557-01 11 47307122 47307122 G A MADD Silent p.G844G 0.25 TCGA-06-2557-01 11 56019879 56019879 C A OR5T3 Silent p.T68T 0.39 TCGA-06-2557-01 11 59834575 59834575 C T MS4A3 Missense_Mutation p.S168F 0.27 tolerated(0.18) benign(0.063) TCGA-06-2557-01 11 63884137 63884137 A G FLRT1 Missense_Mutation p.H133R 0.31 deleterious(0) possibly_damaging(0.835) TCGA-06-2557-01 11 65482151 65482151 C T KAT5 Silent p.V292V 0.42 TCGA-06-2557-01 12 14589059 14589059 A T ATF7IP Missense_Mutation p.K555N 0.21 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-06-2557-01 12 52779219 52779219 C A KRT84 Missense_Mutation p.G51C 0.32 deleterious(0.02) probably_damaging(0.999) TCGA-06-2557-01 12 7805333 7805333 C T APOBEC1 Missense_Mutation p.R48Q 0.17 tolerated(0.66) benign(0.007) TCGA-06-2557-01 14 74360573 74360573 T C ZNF410 Missense_Mutation p.I36T 0.03 deleterious_low_confidence(0.05) probably_damaging(0.992) TCGA-06-2557-01 14 88478073 88478073 C T GPR65 Silent p.T294T 0.13 TCGA-06-2557-01 14 95557393 95557393 C T DICER1 Missense_Mutation p.E1861K 0.27 deleterious(0) probably_damaging(0.992) TCGA-06-2557-01 16 10721415 10721415 G A TEKT5 3'UTR 0.04 TCGA-06-2557-01 16 28515112 28515112 C T IL27 Silent p.A69A 0.25 TCGA-06-2557-01 16 50106625 50106625 G A HEATR3 Missense_Mutation p.A208T 0.62 deleterious(0) probably_damaging(0.949) TCGA-06-2557-01 17 10215363 10215363 C T MYH13 Missense_Mutation p.E1466K 0.30 deleterious(0.02) benign(0.008) TCGA-06-2557-01 19 10655709 10655709 T G ATG4D Silent p.P132P 0.29 TCGA-06-2557-01 19 22156647 22156647 A G ZNF208 Missense_Mutation p.Y397H 0.28 deleterious(0) probably_damaging(0.982) TCGA-06-2557-01 19 49671909 49671910 - GCA TRPM4 In_Frame_Ins p.G238_T239insS 0.51 TCGA-06-2557-01 19 54660572 54660573 TC - LENG1 Frame_Shift_Del p.R168Tfs*5 0.41 TCGA-06-2557-01 1 117603105 117603105 C T TTF2 Silent p.V19V 0.39 TCGA-06-2557-01 1 154294516 154294516 C T AQP10 Silent p.Y71Y 0.21 TCGA-06-2557-01 1 17314833 17314833 C T ATP13A2 Missense_Mutation p.V916M 0.52 deleterious(0) probably_damaging(0.948) TCGA-06-2557-01 1 204410639 204410639 T G PIK3C2B Missense_Mutation p.N1070T 0.56 deleterious(0.02) possibly_damaging(0.904) TCGA-06-2557-01 1 26507077 26507077 C T CNKSR1 Silent p.G62G 0.56 TCGA-06-2557-01 1 35227182 35227182 C T GJB4 Silent p.H109H 0.06 TCGA-06-2557-01 1 59132729 59132729 T C MYSM1 Missense_Mutation p.D671G 0.58 deleterious(0.01) possibly_damaging(0.867) TCGA-06-2557-01 1 70505050 70505050 C T LRRC7 Silent p.Y1143Y 0.08 TCGA-06-2557-01 1 7913069 7913069 C G UTS2 Intron 0.09 TCGA-06-2557-01 20 19998014 19998014 A G NAA20 5'UTR 0.38 TCGA-06-2557-01 20 23383673 23383673 A T NAPB Nonsense_Mutation p.Y45* 0.32 TCGA-06-2557-01 20 49576077 49576077 C T MOCS3 Missense_Mutation p.A233V 0.08 deleterious(0) benign(0.077) TCGA-06-2557-01 20 61296494 61296495 AG - SLCO4A1 Intron 0.19 TCGA-06-2557-01 21 43279747 43279747 C T PRDM15 Missense_Mutation p.G329S 0.49 deleterious_low_confidence(0) possibly_damaging(0.528) TCGA-06-2557-01 2 109410997 109410997 T C CCDC138 Silent p.V132V 0.22 TCGA-06-2557-01 2 130877735 130877735 G A POTEF Silent p.G118G 0.34 TCGA-06-2557-01 2 141986959 141986959 C A LRP1B Nonsense_Mutation p.E215* 0.30 TCGA-06-2557-01 2 198949321 198949321 C T PLCL1 Silent p.Y360Y 0.03 TCGA-06-2557-01 2 70524463 70524463 C T FAM136A Missense_Mutation p.M125I 0.36 tolerated(0.06) benign(0.303) TCGA-06-2557-01 3 100645260 100645260 G A ABI3BP Missense_Mutation p.R56C 0.36 deleterious(0) possibly_damaging(0.689) TCGA-06-2557-01 3 102157373 102157373 G A ZPLD1 Silent p.V30V 0.28 TCGA-06-2557-01 3 126153142 126153142 G A CCDC37 Missense_Mutation p.E516K 0.40 deleterious(0.02) probably_damaging(0.947) TCGA-06-2557-01 3 160804500 160804500 G C B3GALNT1 Missense_Mutation p.L15V 0.21 tolerated(0.98) possibly_damaging(0.636) TCGA-06-2557-01 3 38622444 38622444 G A SCN5A Missense_Mutation p.T1069M 0.16 deleterious(0.02) possibly_damaging(0.804) TCGA-06-2557-01 4 70513401 70513401 C A UGT2A1 5'UTR 0.29 TCGA-06-2557-01 6 134493394 134493394 G A SGK1 Silent p.F336F 0.58 TCGA-06-2557-01 6 27368167 27368167 G A ZNF391 Silent p.G6G 0.37 TCGA-06-2557-01 6 41166083 41166083 T C TREML2 Missense_Mutation p.K47R 0.35 tolerated(0.42) benign(0.046) TCGA-06-2557-01 6 47846894 47846894 G A PTCHD4 Silent p.N562N 0.40 TCGA-06-2557-01 7 100085924 100085924 C A NYAP1 Missense_Mutation p.Q194K 0.17 tolerated(0.48) benign(0.114) TCGA-06-2557-01 7 100678887 100678887 C T MUC17 Missense_Mutation p.P1397L 0.18 unknown(0) TCGA-06-2557-01 7 100887381 100887381 A T FIS1 Missense_Mutation p.S29T 0.26 tolerated(0.55) benign(0.003) TCGA-06-2557-01 7 107214222 107214222 T G DUS4L Missense_Mutation p.C104W 0.38 tolerated(0.15) possibly_damaging(0.537) TCGA-06-2557-01 7 108112799 108112799 A T PNPLA8 3'UTR 0.35 TCGA-06-2557-01 7 32909459 32909459 G T KBTBD2 Missense_Mutation p.T457N 0.35 tolerated(0.2) possibly_damaging(0.718) TCGA-06-2557-01 7 50467932 50467932 C T IKZF1 Silent p.S347S 0.14 TCGA-06-2557-01 7 72742651 72742651 G A FKBP6 Missense_Mutation p.R44Q 0.38 tolerated(0.4) benign(0.063) TCGA-06-2557-01 7 75625706 75625706 G A STYXL1 3'UTR 0.09 TCGA-06-2557-01 7 80387708 80387708 G A SEMA3C Missense_Mutation p.R528W 0.52 deleterious(0.02) probably_damaging(0.996) TCGA-06-2557-01 7 98257875 98257875 C T NPTX2 Silent p.V410V 0.20 TCGA-06-2557-01 8 130854353 130854353 T C FAM49B 3'UTR 0.38 TCGA-06-2557-01 9 21971124 21971125 GA - CDKN2A Frame_Shift_Del p.L78Hfs*41 0.53 TCGA-06-2557-01 X 26212711 26212711 G A MAGEB6 Missense_Mutation p.V250I 0.76 tolerated(0.27) probably_damaging(0.984) TCGA-06-2558-01 10 17083094 17083094 T C CUBN Missense_Mutation p.N1319D 0.03 deleterious(0.04) probably_damaging(0.947) TCGA-06-2558-01 10 52587910 52587910 T A A1CF Missense_Mutation p.E258D 0.54 tolerated(0.21) probably_damaging(0.997) TCGA-06-2558-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.66 TCGA-06-2558-01 11 113650596 113650596 A G CLDN25 Missense_Mutation p.T27A 0.10 deleterious(0.03) benign(0.181) TCGA-06-2558-01 11 4945014 4945014 T A OR51G1 Missense_Mutation p.I186F 0.61 deleterious(0) possibly_damaging(0.673) TCGA-06-2558-01 11 61646097 61646097 C G FADS3 Missense_Mutation p.A212P 0.39 tolerated(0.09) probably_damaging(0.988) TCGA-06-2558-01 11 64001432 64001432 C T DNAJC4 Silent p.N198N 0.32 TCGA-06-2558-01 11 92533806 92533806 C T FAT3 Nonsense_Mutation p.R2543* 0.31 TCGA-06-2558-01 11 99690432 99690432 G T CNTN5 Silent p.G71G 0.11 TCGA-06-2558-01 12 13208635 13208635 A G KIAA1467 Missense_Mutation p.D63G 0.40 tolerated(0.11) possibly_damaging(0.898) TCGA-06-2558-01 12 31231422 31231422 G A DDX11 Missense_Mutation p.R32Q 0.34 tolerated(1) benign(0.003) TCGA-06-2558-01 12 70949924 70949924 A G PTPRB Silent p.P1573P 0.06 TCGA-06-2558-01 12 7476137 7476137 G C ACSM4 Missense_Mutation p.C430S 0.36 tolerated(0.17) benign(0.034) TCGA-06-2558-01 12 7636017 7636017 G A CD163 Missense_Mutation p.R1012C 0.41 deleterious(0) possibly_damaging(0.738) TCGA-06-2558-01 14 19670997 19670997 C T BMS1P17 RNA 0.39 TCGA-06-2558-01 14 44974610 44974610 A T FSCB Silent p.L527L 0.09 TCGA-06-2558-01 14 62536340 62536340 C T SYT16 Silent p.D181D 0.36 TCGA-06-2558-01 14 95054156 95054156 T C SERPINA5 Missense_Mutation p.Y153H 0.08 deleterious(0) probably_damaging(1) TCGA-06-2558-01 15 53994476 53994476 G A WDR72 Missense_Mutation p.S475L 0.64 tolerated(0.13) possibly_damaging(0.657) TCGA-06-2558-01 15 63948072 63948072 C T HERC1 Missense_Mutation p.R3318Q 0.86 probably_damaging(0.99) TCGA-06-2558-01 16 20548638 20548638 T C ACSM2B Missense_Mutation p.Q559R 0.16 tolerated(0.8) benign(0.009) TCGA-06-2558-01 16 27441407 27441407 G A IL21R Nonsense_Mutation p.W5* 0.30 TCGA-06-2558-01 17 1551765 1551765 G T RILP Missense_Mutation p.R234S 0.44 tolerated(0.21) benign(0.003) TCGA-06-2558-01 17 20405909 20405909 G A RP11-434D2.7 3'Flank 0.28 TCGA-06-2558-01 17 38133285 38133285 C T GSDMA Missense_Mutation p.L438F 0.13 tolerated(0.26) benign(0.027) TCGA-06-2558-01 17 56355275 56355275 C T MPO Missense_Mutation p.G373S 0.41 deleterious(0.02) probably_damaging(0.968) TCGA-06-2558-01 17 7577097 7577097 C G TP53 Missense_Mutation p.D281H 0.65 tolerated(0.07) probably_damaging(0.998) TCGA-06-2558-01 17 76420030 76420030 G A DNAH17 Missense_Mutation p.A4472V 0.44 benign(0.294) TCGA-06-2558-01 17 7752755 7752755 C T KDM6B Missense_Mutation p.P1050L 0.36 benign(0.235) TCGA-06-2558-01 18 52921829 52921829 C T TCF4 Missense_Mutation p.D519N 0.68 deleterious(0.02) probably_damaging(0.983) TCGA-06-2558-01 18 67992070 67992070 A G SOCS6 Missense_Mutation p.I56V 0.38 tolerated_low_confidence(0.15) benign(0) TCGA-06-2558-01 19 1083208 1083208 G A HMHA1 Silent p.T953T 0.38 TCGA-06-2558-01 19 43859694 43859694 C T CD177 Missense_Mutation p.P136L 0.23 tolerated(0.06) benign(0.002) TCGA-06-2558-01 1 117552685 117552685 C T CD101 Missense_Mutation p.T86M 0.41 deleterious(0) benign(0.104) TCGA-06-2558-01 1 147119358 147119358 G A ACP6 Missense_Mutation p.P385L 0.38 tolerated(0.31) benign(0.005) TCGA-06-2558-01 1 150325628 150325628 C A PRPF3 3'UTR 0.38 TCGA-06-2558-01 1 154295505 154295505 C T AQP10 Missense_Mutation p.R94C 0.32 deleterious(0.05) benign(0.082) TCGA-06-2558-01 1 158581033 158581033 C T SPTA1 3'UTR 0.39 TCGA-06-2558-01 1 209773439 209773439 G A CAMK1G Silent p.E68E 0.10 TCGA-06-2558-01 1 228345795 228345795 C T GJC2 Silent p.R112R 0.45 TCGA-06-2558-01 1 247835495 247835495 G T OR13G1 Missense_Mutation p.N283K 0.04 deleterious(0) probably_damaging(0.996) TCGA-06-2558-01 1 248112821 248112821 T C OR2L8 Missense_Mutation p.L221P 0.19 deleterious(0) probably_damaging(0.994) TCGA-06-2558-01 1 47264924 47264924 T C CYP4B1 Silent p.H57H 0.57 TCGA-06-2558-01 1 47348934 47348934 C T CYP4Z2P RNA 0.35 TCGA-06-2558-01 20 17434509 17434509 C T PCSK2 Silent p.N336N 0.35 TCGA-06-2558-01 20 35506344 35506344 G T TLDC2 Nonsense_Mutation p.E26* 0.37 TCGA-06-2558-01 20 62198633 62198633 G A HELZ2 Missense_Mutation p.A693V 0.44 deleterious(0) probably_damaging(1) TCGA-06-2558-01 20 744614 744614 C T SLC52A3 Missense_Mutation p.G201R 0.29 tolerated(0.15) benign(0.001) TCGA-06-2558-01 21 15858270 15858270 A T SAMSN1 Missense_Mutation p.M430K 0.35 deleterious(0.01) possibly_damaging(0.535) TCGA-06-2558-01 21 46645582 46645582 G A ADARB1 3'UTR 0.36 TCGA-06-2558-01 2 178416069 178416069 A T TTC30B Missense_Mutation p.Y475N 0.06 deleterious(0.03) probably_damaging(0.95) TCGA-06-2558-01 2 192265141 192265141 A G MYO1B Missense_Mutation p.K777E 0.31 tolerated(0.21) benign(0.076) TCGA-06-2558-01 2 196852773 196852773 A G DNAH7 Missense_Mutation p.F512L 0.05 deleterious(0.04) benign(0.065) TCGA-06-2558-01 2 219029097 219029097 G A CXCR1 Missense_Mutation p.R280C 0.34 deleterious(0) probably_damaging(0.953) TCGA-06-2558-01 2 230724206 230724206 C T TRIP12 Silent p.G61G 0.36 TCGA-06-2558-01 2 3482694 3482694 G T TRAPPC12 Missense_Mutation p.R652I 0.35 deleterious(0.03) benign(0.002) TCGA-06-2558-01 2 43802136 43802136 C T THADA Silent p.L356L 0.34 TCGA-06-2558-01 2 7154885 7154885 A G RNF144A Missense_Mutation p.K95E 0.06 deleterious(0.01) benign(0.155) TCGA-06-2558-01 3 183667646 183667646 C T ABCC5 Missense_Mutation p.R1041H 0.25 deleterious(0.02) probably_damaging(0.958) TCGA-06-2558-01 3 183824315 183824315 G T HTR3E Missense_Mutation p.G428V 0.36 tolerated(0.09) benign(0.101) TCGA-06-2558-01 3 30032579 30032579 G T RBMS3 Missense_Mutation p.V396F 0.30 tolerated_low_confidence(0.21) possibly_damaging(0.845) TCGA-06-2558-01 3 33584995 33584995 G A CLASP2 Nonsense_Mutation p.R1120* 0.04 TCGA-06-2558-01 3 52550236 52550236 G A STAB1 Missense_Mutation p.G1376R 0.45 deleterious(0) probably_damaging(1) TCGA-06-2558-01 3 57646541 57646541 A G DENND6A Silent p.P215P 0.37 TCGA-06-2558-01 3 73114106 73114106 C T PPP4R2 Missense_Mutation p.L248F 0.38 deleterious(0.01) probably_damaging(1) TCGA-06-2558-01 4 10567771 10567771 T C CLNK Missense_Mutation p.R52G 0.40 deleterious(0.04) benign(0.025) TCGA-06-2558-01 4 111464226 111464226 G T ENPEP Missense_Mutation p.R667I 0.37 deleterious(0.02) possibly_damaging(0.849) TCGA-06-2558-01 4 47625643 47625643 C A CORIN Missense_Mutation p.G829C 0.06 deleterious(0) probably_damaging(1) TCGA-06-2558-01 5 129244015 129244015 C T CHSY3 Missense_Mutation p.R350C 0.41 deleterious(0) probably_damaging(0.995) TCGA-06-2558-01 5 148929730 148929730 C T CSNK1A1 Silent p.K46K 0.30 TCGA-06-2558-01 5 180048822 180048822 G A FLT4 Silent p.A580A 0.11 TCGA-06-2558-01 5 34924991 34924991 C G BRIX1 Missense_Mutation p.R235G 0.36 deleterious(0) probably_damaging(0.995) TCGA-06-2558-01 6 152652051 152652051 T C SYNE1 Missense_Mutation p.N4590S 0.37 possibly_damaging(0.504) TCGA-06-2558-01 6 35855829 35855829 G C SRPK1 Missense_Mutation p.A121G 0.37 deleterious(0.04) probably_damaging(0.999) TCGA-06-2558-01 6 36652137 36652137 G A CDKN1A Missense_Mutation p.D87N 0.37 tolerated(0.11) benign(0.402) TCGA-06-2558-01 6 51910848 51910848 G T PKHD1 Missense_Mutation p.T849N 0.10 tolerated(0.06) probably_damaging(1) TCGA-06-2558-01 6 55113582 55113582 A G HCRTR2 Silent p.G123G 0.04 TCGA-06-2558-01 6 7569463 7569463 C T DSP Silent p.N488N 0.28 TCGA-06-2558-01 7 142658027 142658027 G A KEL Missense_Mutation p.R130W 0.07 tolerated(0.16) benign(0.075) TCGA-06-2558-01 7 31126052 31126052 T A ADCYAP1R1 Missense_Mutation p.F242I 0.05 deleterious(0) probably_damaging(0.997) TCGA-06-2558-01 7 43485123 43485123 G A HECW1 Silent p.P784P 0.14 TCGA-06-2558-01 7 80091827 80091827 G A GNAT3 Silent p.D237D 0.26 TCGA-06-2558-01 7 80378254 80378254 A G SEMA3C Missense_Mutation p.I601T 0.31 deleterious(0.04) benign(0.304) TCGA-06-2558-01 7 81635118 81635118 G C CACNA2D1 Missense_Mutation p.S493C 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-06-2558-01 8 101059740 101059740 G A RGS22 Missense_Mutation p.R592W 0.40 deleterious(0.01) possibly_damaging(0.702) TCGA-06-2558-01 8 124206323 124206323 C T FAM83A Silent p.F236F 0.41 TCGA-06-2558-01 8 30977768 30977768 G C WRN Missense_Mutation p.A820P 0.37 deleterious(0) probably_damaging(1) TCGA-06-2558-01 8 57078766 57078766 A T PLAG1 3'UTR 0.38 TCGA-06-2558-01 8 97614730 97614730 C G SDC2 Missense_Mutation p.Q94E 0.31 tolerated(0.19) benign(0.307) TCGA-06-2558-01 9 107332231 107332231 G A OR13C8 Silent p.K261K 0.08 TCGA-06-2558-01 X 119410875 119410875 G A TMEM255A Silent p.Y204Y 0.31 TCGA-06-2558-01 X 15509315 15509315 C T PIR Silent p.A22A 0.36 TCGA-06-2558-01 X 21675201 21675201 C T KLHL34 Missense_Mutation p.V236M 0.38 tolerated(0.11) benign(0.066) TCGA-06-2558-01 X 34962438 34962438 A T FAM47B Missense_Mutation p.K497M 0.38 deleterious(0.02) possibly_damaging(0.847) TCGA-06-2558-01 X 37850145 37850145 A T CXorf27 Missense_Mutation p.Q18L 0.13 deleterious(0.03) benign(0.139) TCGA-06-2558-01 X 50134485 50134485 A C DGKK RNA 0.37 TCGA-06-2558-01 X 72433530 72433530 T A NAP1L2 Nonsense_Mutation p.K267* 0.29 TCGA-06-2558-01 X 91132696 91132696 C T PCDH11X Missense_Mutation p.T486M 0.19 tolerated(0.12) probably_damaging(0.994) TCGA-06-2559-01 10 105798253 105798253 G A COL17A1 Missense_Mutation p.P994L 0.82 probably_damaging(0.992) TCGA-06-2559-01 10 37506710 37506710 G A ANKRD30A Silent p.E1001E 0.45 TCGA-06-2559-01 10 50369506 50369506 G T C10orf128 Intron 0.27 TCGA-06-2559-01 10 72495039 72495039 C T ADAMTS14 Silent p.G492G 0.79 TCGA-06-2559-01 10 89692993 89692993 G T PTEN Missense_Mutation p.R159S 0.64 deleterious(0) probably_damaging(0.998) TCGA-06-2559-01 11 123847486 123847486 G A OR10S1 Missense_Mutation p.R305W 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-2559-01 11 26692608 26692608 G T SLC5A12 3'UTR 0.54 TCGA-06-2559-01 11 294757 294757 C T ATHL1 3'UTR 0.09 TCGA-06-2559-01 12 131487809 131487809 C T GPR133 Missense_Mutation p.T369M 0.25 deleterious(0.05) benign(0.2) TCGA-06-2559-01 13 21331636 21331636 G A N6AMT2 Silent p.G34G 0.23 TCGA-06-2559-01 14 21876530 21876530 C G CHD8 Missense_Mutation p.G891R 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-2559-01 14 24109023 24109023 C T DHRS2 Silent p.G113G 0.40 TCGA-06-2559-01 14 24524519 24524519 G A LRRC16B Missense_Mutation p.R202Q 0.12 deleterious(0) probably_damaging(0.946) TCGA-06-2559-01 15 24921169 24921169 G A NPAP1 Missense_Mutation p.R52H 0.37 tolerated(0.25) possibly_damaging(0.715) TCGA-06-2559-01 16 21698817 21698817 C T OTOA Silent p.L161L 0.41 TCGA-06-2559-01 16 23226433 23226433 C A SCNN1G Missense_Mutation p.F531L 0.61 tolerated(1) benign(0.077) TCGA-06-2559-01 16 31409190 31409190 G A ITGAD Silent p.S129S 0.41 TCGA-06-2559-01 16 57054711 57054711 C T NLRC5 Silent p.N29N 0.50 TCGA-06-2559-01 16 57088674 57088674 C T NLRC5 Missense_Mutation p.T1173M 0.04 tolerated(0.05) benign(0.097) TCGA-06-2559-01 16 603459 603459 C T CAPN15 Silent p.T1068T 0.50 TCGA-06-2559-01 17 10213133 10213133 G A MYH13 Silent p.H1557H 0.56 TCGA-06-2559-01 17 38936090 38936090 C T KRT27 Silent p.A236A 0.36 TCGA-06-2559-01 17 56599396 56599396 C A SEPT4 Silent p.L258L 0.12 TCGA-06-2559-01 17 57290240 57290240 A G SMG8 Missense_Mutation p.T686A 0.48 tolerated(0.42) benign(0.047) TCGA-06-2559-01 17 73498060 73498062 GGA - CASKIN2 In_Frame_Del p.P1032del 0.57 TCGA-06-2559-01 17 7578280 7578280 G A TP53 Missense_Mutation p.P190L 0.45 deleterious(0.05) possibly_damaging(0.812) TCGA-06-2559-01 17 7578466 7578466 G T TP53 Missense_Mutation p.T155N 0.42 deleterious(0.01) possibly_damaging(0.731) TCGA-06-2559-01 17 8243550 8243550 C T ODF4 Missense_Mutation p.R61C 0.47 deleterious(0) probably_damaging(0.995) TCGA-06-2559-01 19 10687915 10687915 G A AP1M2 Missense_Mutation p.P336S 0.12 deleterious(0) probably_damaging(1) TCGA-06-2559-01 19 14991924 14991924 G A OR7A17 Missense_Mutation p.L82F 0.06 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-06-2559-01 19 43679606 43679606 G A PSG5 Missense_Mutation p.P242L 0.42 deleterious(0) probably_damaging(1) TCGA-06-2559-01 19 5221107 5221107 T C PTPRS Missense_Mutation p.N1120S 0.40 tolerated(0.09) benign(0.034) TCGA-06-2559-01 19 55316286 55316286 G A KIR2DL4 Missense_Mutation p.A39T 0.24 tolerated(0.06) benign(0.015) TCGA-06-2559-01 19 56368923 56368923 G T NLRP4 Intron 0.57 TCGA-06-2559-01 19 56369522 56369522 C T NLRP4 Missense_Mutation p.R255W 0.41 deleterious(0.01) benign(0.211) TCGA-06-2559-01 19 58117684 58117684 C A ZNF530 Missense_Mutation p.T264K 0.04 tolerated(0.4) benign(0.054) TCGA-06-2559-01 1 152192836 152192836 A G HRNR Silent p.S423S 0.32 TCGA-06-2559-01 1 158654966 158654966 C T SPTA1 Missense_Mutation p.G66R 0.49 deleterious(0.01) benign(0.288) TCGA-06-2559-01 1 27992966 27992966 C T IFI6 Missense_Mutation p.V115I 0.10 tolerated(0.5) benign(0.001) TCGA-06-2559-01 1 70641517 70641517 T G LRRC40 Missense_Mutation p.D318A 0.40 deleterious(0) probably_damaging(0.995) TCGA-06-2559-01 1 78392171 78392171 A T NEXN Missense_Mutation p.N188Y 0.13 deleterious(0.04) benign(0.372) TCGA-06-2559-01 1 85560129 85560129 C T WDR63 Missense_Mutation p.S355L 0.03 deleterious(0) probably_damaging(0.954) TCGA-06-2559-01 1 87570431 87570431 C T HS2ST1 3'UTR 0.12 TCGA-06-2559-01 22 22142672 22142672 G A MAPK1 Missense_Mutation p.L244F 0.46 deleterious(0) probably_damaging(0.94) TCGA-06-2559-01 22 37524496 37524496 G T IL2RB Silent p.P432P 0.16 TCGA-06-2559-01 2 103057838 103057838 G T IL18RAP Splice_Site p.X266_splice 0.52 TCGA-06-2559-01 2 132508374 132508374 G A C2orf27A 5'UTR 0.45 TCGA-06-2559-01 2 170009381 170009381 A G LRP2 Missense_Mutation p.L4130P 0.47 benign(0) TCGA-06-2559-01 2 170101420 170101420 C T LRP2 Silent p.A1071A 0.10 TCGA-06-2559-01 2 170929938 170929940 GAA - UBR3 In_Frame_Del p.E1677del 0.31 TCGA-06-2559-01 2 201478598 201478598 C T AOX1 Missense_Mutation p.A507V 0.43 tolerated(0.08) probably_damaging(0.966) TCGA-06-2559-01 2 33335817 33335817 G A LTBP1 Silent p.Q344Q 0.42 TCGA-06-2559-01 2 88327482 88327482 C T KRCC1 Missense_Mutation p.E201K 0.04 tolerated(0.43) benign(0.006) TCGA-06-2559-01 3 194062679 194062679 G A CPN2 Silent p.N251N 0.46 TCGA-06-2559-01 3 33134390 33134390 C A TMPPE Missense_Mutation p.G433V 0.40 deleterious(0) probably_damaging(0.997) TCGA-06-2559-01 3 69075241 69075241 T C TMF1 Missense_Mutation p.K922R 0.06 tolerated(0.32) benign(0.016) TCGA-06-2559-01 3 77089869 77089869 T A ROBO2 Intron 0.43 TCGA-06-2559-01 4 113436257 113436257 C T NEUROG2 Missense_Mutation p.M125I 0.35 deleterious(0) probably_damaging(0.932) TCGA-06-2559-01 4 141302333 141302333 T C SCOC 3'UTR 0.15 TCGA-06-2559-01 4 3432638 3432638 C T RGS12 Missense_Mutation p.P1357L 0.35 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-2559-01 4 55133901 55133901 G A PDGFRA Missense_Mutation p.E372K 0.23 deleterious(0.04) probably_damaging(0.989) TCGA-06-2559-01 4 55144136 55144136 G C PDGFRA Missense_Mutation p.L655F 0.13 deleterious(0) probably_damaging(0.999) TCGA-06-2559-01 5 127728841 127728841 G T FBN2 Silent p.I484I 0.40 TCGA-06-2559-01 5 140768969 140768969 C T PCDHGB4 Silent p.S506S 0.41 TCGA-06-2559-01 5 23526957 23526957 G A PRDM9 Missense_Mutation p.R587Q 0.39 tolerated(0.12) probably_damaging(0.995) TCGA-06-2559-01 5 43040058 43040058 C A ANXA2R Nonsense_Mutation p.E31* 0.05 TCGA-06-2559-01 5 56168506 56168506 T C MAP3K1 Missense_Mutation p.C488R 0.40 deleterious(0) probably_damaging(0.981) TCGA-06-2559-01 5 89989726 89989726 C T GPR98 Silent p.L2385L 0.42 TCGA-06-2559-01 6 34827265 34827265 G A UHRF1BP1 Silent p.V1044V 0.38 TCGA-06-2559-01 6 39893563 39893563 C T MOCS1 Missense_Mutation p.V93I 0.36 tolerated(0.13) benign(0.113) TCGA-06-2559-01 6 5109631 5109631 G A LYRM4 3'UTR 0.10 TCGA-06-2559-01 7 126173406 126173406 A G GRM8 Missense_Mutation p.F677S 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-2559-01 7 99706049 99706049 G A TAF6 Missense_Mutation p.R504W 0.26 deleterious(0.03) probably_damaging(0.998) TCGA-06-2559-01 8 104390318 104390318 C T CTHRC1 Missense_Mutation p.R146W 0.05 deleterious(0) probably_damaging(0.991) TCGA-06-2559-01 8 134042090 134042090 G - TG Frame_Shift_Del p.L2356Cfs*8 0.47 TCGA-06-2559-01 8 21823758 21823759 - T XPO7 Intron 0.34 TCGA-06-2559-01 9 135975937 135975937 C A RALGDS Intron 0.38 TCGA-06-2559-01 9 20821058 20821058 T C FOCAD Missense_Mutation p.I594T 0.03 deleterious(0) possibly_damaging(0.745) TCGA-06-2559-01 9 32630579 32630579 C T TAF1L Missense_Mutation p.D1667N 0.40 deleterious_low_confidence(0.03) benign(0.14) TCGA-06-2559-01 9 36162546 36162546 A G GLIPR2 3'UTR 0.40 TCGA-06-2559-01 9 40772401 40772401 T A ZNF658 Missense_Mutation p.R958S 0.48 tolerated(0.06) probably_damaging(0.999) TCGA-06-2559-01 X 39923055 39923055 C T BCOR Nonsense_Mutation p.W1218* 0.89 TCGA-06-2559-01 X 70680612 70680612 C T TAF1 Silent p.D1806D 0.78 TCGA-06-2559-01 X 91132792 91132792 G A PCDH11X Missense_Mutation p.R518H 0.86 tolerated(0.14) benign(0.031) TCGA-06-2559-01 Y 24052575 24052575 G T RBMY1E Missense_Mutation p.P271T 0.33 tolerated(0.14) benign(0.346) TCGA-06-2561-01 10 74234889 74234889 C T MICU1 Missense_Mutation p.R301H 0.22 tolerated(0.19) benign(0.002) TCGA-06-2561-01 10 89720799 89720802 TACT - PTEN Frame_Shift_Del p.T319* 0.46 TCGA-06-2561-01 11 64575552 64575552 G A MEN1 Silent p.S160S 0.08 TCGA-06-2561-01 11 92715286 92715286 C T MTNR1B Silent p.F299F 0.31 TCGA-06-2561-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.60 deleterious(0) benign(0.361) TCGA-06-2561-01 12 49169145 49169145 G A ADCY6 Missense_Mutation p.R641W 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-2561-01 15 55790519 55790520 AA - DYX1C1 Frame_Shift_Del p.L3Pfs*3 0.26 TCGA-06-2561-01 15 74365151 74365151 A C GOLGA6A Missense_Mutation p.L478R 0.15 deleterious(0) possibly_damaging(0.771) TCGA-06-2561-01 15 90802040 90802040 C T TTLL13 Silent p.L411L 0.04 TCGA-06-2561-01 16 21145587 21145587 A G DNAH3 Missense_Mutation p.F359L 0.26 tolerated(0.32) benign(0.003) TCGA-06-2561-01 16 47117089 47117089 G A NETO2 3'UTR 0.33 TCGA-06-2561-01 17 26911445 26911445 G C SPAG5 Missense_Mutation p.L739V 0.26 deleterious(0.04) possibly_damaging(0.797) TCGA-06-2561-01 17 36065013 36065013 G A HNF1B Missense_Mutation p.T417M 0.31 deleterious(0) probably_damaging(1) TCGA-06-2561-01 17 37431297 37431297 G T FBXL20 Silent p.S251S 0.13 TCGA-06-2561-01 18 77659449 77659449 G A KCNG2 Missense_Mutation p.R345H 0.22 tolerated(0.48) possibly_damaging(0.88) TCGA-06-2561-01 19 15132177 15132177 C T CCDC105 Missense_Mutation p.A296V 0.22 tolerated(0.17) benign(0.184) TCGA-06-2561-01 19 22155492 22155492 A C ZNF208 Missense_Mutation p.C782G 0.28 deleterious(0.02) possibly_damaging(0.8) TCGA-06-2561-01 19 3942189 3942189 G A NMRK2 Missense_Mutation p.R204H 0.45 tolerated_low_confidence(0.14) benign(0.032) TCGA-06-2561-01 1 179304764 179304764 G A SOAT1 Missense_Mutation p.E101K 0.27 tolerated(0.89) benign(0.001) TCGA-06-2561-01 1 179304793 179304793 G C SOAT1 Splice_Site p.X110_splice 0.24 TCGA-06-2561-01 1 27217359 27217359 G A GPATCH3 3'UTR 0.05 TCGA-06-2561-01 1 31409615 31409615 A C PUM1 Missense_Mutation p.C1104G 0.27 deleterious(0) possibly_damaging(0.804) TCGA-06-2561-01 21 15561699 15561699 T C LIPI Missense_Mutation p.K51E 0.30 tolerated(0.24) possibly_damaging(0.772) TCGA-06-2561-01 2 179623871 179623871 G T TTN Missense_Mutation p.D3381E 0.25 TCGA-06-2561-01 2 208434967 208434971 GAAGA - CREB1 Frame_Shift_Del p.E157Gfs*20 0.33 TCGA-06-2561-01 2 216995664 216995664 C T XRCC5 Missense_Mutation p.S335L 0.25 tolerated(0.1) benign(0.049) TCGA-06-2561-01 2 60679781 60679781 G A BCL11A 3'Flank 0.33 TCGA-06-2561-01 2 73717955 73717955 G C ALMS1 Missense_Mutation p.A2956P 0.26 probably_damaging(0.974) TCGA-06-2561-01 2 73717985 73717985 G C ALMS1 Missense_Mutation p.E2966Q 0.28 probably_damaging(0.95) TCGA-06-2561-01 3 10107617 10107617 C T FANCD2 Missense_Mutation p.S780L 0.26 deleterious(0.01) possibly_damaging(0.521) TCGA-06-2561-01 3 9055068 9055068 C A SRGAP3 Nonsense_Mutation p.E691* 0.25 TCGA-06-2561-01 4 57189557 57189557 C T KIAA1211 Nonsense_Mutation p.Q1068* 0.29 TCGA-06-2561-01 4 70505072 70505072 A G UGT2A2 Missense_Mutation p.I96T 0.30 tolerated(0.1) benign(0.205) TCGA-06-2561-01 4 74283255 74283255 G T ALB Missense_Mutation p.V433F 0.04 tolerated(0.05) possibly_damaging(0.811) TCGA-06-2561-01 6 45882089 45882089 G C CLIC5 Missense_Mutation p.P314R 0.33 deleterious(0) probably_damaging(0.994) TCGA-06-2561-01 6 84284736 84284736 G A SNAP91 Missense_Mutation p.A812V 0.50 tolerated(0.14) possibly_damaging(0.878) TCGA-06-2561-01 7 106508473 106508473 C T PIK3CG Missense_Mutation p.A156V 0.29 tolerated(0.12) benign(0.03) TCGA-06-2561-01 7 55214319 55214319 C T EGFR Missense_Mutation p.R149W 0.10 tolerated(0.13) probably_damaging(0.976) TCGA-06-2561-01 8 22106786 22106786 C T POLR3D Silent p.D295D 0.27 TCGA-06-2561-01 9 125391091 125391091 G A OR1B1 Nonsense_Mutation p.R242* 0.58 TCGA-06-2561-01 9 20448206 20448206 G - MLLT3 Frame_Shift_Del p.P112Hfs*3 0.38 TCGA-06-2561-01 X 114142104 114142104 C A HTR2C 3'UTR 0.24 TCGA-06-2561-01 X 123197901 123197901 G C STAG2 Missense_Mutation p.E675D 0.31 tolerated(0.06) benign(0.03) TCGA-06-2561-01 X 134679466 134679466 G A DDX26B Missense_Mutation p.R103K 0.23 deleterious(0.01) probably_damaging(0.946) TCGA-06-2561-01 X 134993470 134993470 T A SAGE1 Missense_Mutation p.C709S 0.30 tolerated(1) benign(0) TCGA-06-2561-01 X 51239120 51239120 G A NUDT11 Silent p.G59G 0.53 TCGA-06-2562-01 10 98808848 98808848 G A SLIT1 Silent p.C443C 0.62 TCGA-06-2562-01 11 17419338 17419338 T C ABCC8 Missense_Mutation p.I1254V 0.38 tolerated(0.14) benign(0.141) TCGA-06-2562-01 11 60183620 60183620 C T MS4A14 Silent p.H426H 0.41 TCGA-06-2562-01 11 68177525 68177525 G A LRP5 Silent p.A745A 0.38 TCGA-06-2562-01 11 7111073 7111073 G A RBMXL2 Missense_Mutation p.R241H 0.38 tolerated(0.15) possibly_damaging(0.522) TCGA-06-2562-01 12 104378553 104378553 T A TDG Missense_Mutation p.S273R 0.09 deleterious(0) probably_damaging(1) TCGA-06-2562-01 12 129558525 129558525 G A TMEM132D Silent p.I1065I 0.34 TCGA-06-2562-01 12 32897790 32897790 C T DNM1L 3'Flank 0.42 TCGA-06-2562-01 12 44124127 44124127 C A PUS7L 3'UTR 0.32 TCGA-06-2562-01 12 75678781 75678781 A G CAPS2 Missense_Mutation p.I511T 0.41 tolerated(0.12) benign(0.206) TCGA-06-2562-01 13 107187195 107187195 A C EFNB2 Missense_Mutation p.S40A 0.32 tolerated(0.46) benign(0.001) TCGA-06-2562-01 14 88654322 88654322 T C KCNK10 Missense_Mutation p.T334A 0.37 deleterious(0) probably_damaging(0.996) TCGA-06-2562-01 15 40629935 40629935 C T C15orf52 Missense_Mutation p.A269T 0.09 tolerated(0.39) benign(0.253) TCGA-06-2562-01 16 21080807 21080807 C T DNAH3 Missense_Mutation p.A1104T 0.34 tolerated(0.14) probably_damaging(0.975) TCGA-06-2562-01 16 2231462 2231462 G A CASKIN1 Missense_Mutation p.P636L 0.22 benign(0.012) TCGA-06-2562-01 16 31382999 31382999 G A ITGAX Missense_Mutation p.R685H 0.38 deleterious(0.04) benign(0.187) TCGA-06-2562-01 16 66918530 66918530 G A PDP2 Missense_Mutation p.A115T 0.41 deleterious(0.02) probably_damaging(0.971) TCGA-06-2562-01 17 29541476 29541476 C - NF1 Frame_Shift_Del p.T467Nfs*6 0.16 TCGA-06-2562-01 17 29652976 29652979 TCTC - NF1 Frame_Shift_Del p.K1661Gfs*36 0.29 TCGA-06-2562-01 17 56435337 56435337 T G RNF43 Missense_Mutation p.R600S 0.33 tolerated_low_confidence(0.28) benign(0.003) TCGA-06-2562-01 18 12703105 12703105 C T PSMG2 5'UTR 0.21 TCGA-06-2562-01 18 63489429 63489429 A G CDH7 Silent p.T246T 0.39 TCGA-06-2562-01 18 72775604 72775604 C T ZNF407 Missense_Mutation p.S1976L 0.28 deleterious(0.01) benign(0.019) TCGA-06-2562-01 19 21950228 21950228 C T ZNF100 Splice_Site p.X1_splice 0.33 TCGA-06-2562-01 19 35804318 35804318 G A MAG Silent p.T614T 0.31 TCGA-06-2562-01 19 50392981 50392981 T G IL4I1 Silent p.P572P 0.28 TCGA-06-2562-01 1 111494470 111494470 G A LRIF1 Nonsense_Mutation p.R346* 0.34 TCGA-06-2562-01 1 114508833 114508833 G T HIPK1 Missense_Mutation p.V774F 0.35 tolerated(0.2) probably_damaging(0.921) TCGA-06-2562-01 1 114508840 114508840 C A HIPK1 Missense_Mutation p.P776H 0.36 tolerated(0.38) benign(0.013) TCGA-06-2562-01 1 155186783 155186783 C T MTX1 3'Flank 0.31 TCGA-06-2562-01 1 156235769 156235769 T C SMG5 Missense_Mutation p.N553S 0.27 tolerated(0.35) probably_damaging(0.937) TCGA-06-2562-01 1 159162382 159162382 C T CADM3 Nonsense_Mutation p.R116* 0.04 TCGA-06-2562-01 1 16093947 16093947 G A FBLIM1 Silent p.P109P 0.53 TCGA-06-2562-01 1 161049728 161049728 C T PVRL4 Missense_Mutation p.A31T 0.37 tolerated(0.1) benign(0.367) TCGA-06-2562-01 1 168550427 168550427 C T XCL1 Missense_Mutation p.S105L 0.27 deleterious(0.03) benign(0.032) TCGA-06-2562-01 1 207107798 207107798 C T PIGR Missense_Mutation p.V558I 0.38 tolerated(0.18) benign(0.351) TCGA-06-2562-01 1 248367150 248367150 C T OR2M3 Missense_Mutation p.R261W 0.38 deleterious(0.04) benign(0.005) TCGA-06-2562-01 20 23016341 23016341 G A SSTR4 Missense_Mutation p.R74H 0.23 tolerated(0.1) probably_damaging(0.993) TCGA-06-2562-01 20 44673744 44673744 G A SLC12A5 Missense_Mutation p.A535T 0.31 deleterious(0.01) possibly_damaging(0.764) TCGA-06-2562-01 20 57599544 57599544 C T TUBB1 Silent p.C354C 0.28 TCGA-06-2562-01 20 8628555 8628559 AACTT - PLCB1 Frame_Shift_Del p.L159Afs*26 0.20 TCGA-06-2562-01 22 21340179 21340179 T C LZTR1 Missense_Mutation p.W105R 0.51 deleterious(0) probably_damaging(1) TCGA-06-2562-01 2 179446906 179446906 T C TTN Missense_Mutation p.I22064V 0.37 TCGA-06-2562-01 2 70901894 70901894 C T ADD2 Missense_Mutation p.V553M 0.32 tolerated(0.26) benign(0.013) TCGA-06-2562-01 2 89103871 89103871 T - ANKRD36BP2 RNA 0.38 TCGA-06-2562-01 3 121350755 121350755 G A HCLS1 Missense_Mutation p.R467W 0.40 deleterious(0) possibly_damaging(0.898) TCGA-06-2562-01 3 127396603 127396603 G T ABTB1 Missense_Mutation p.G316C 0.30 deleterious(0.03) possibly_damaging(0.563) TCGA-06-2562-01 3 134967277 134967277 G A EPHB1 Silent p.A872A 0.33 TCGA-06-2562-01 3 147108751 147108751 G A ZIC4 Missense_Mutation p.A374V 0.53 tolerated_low_confidence(0.1) probably_damaging(0.939) TCGA-06-2562-01 3 15686975 15686975 C T BTD Missense_Mutation p.R538C 0.35 deleterious(0) probably_damaging(1) TCGA-06-2562-01 3 98002586 98002586 C T OR5H2 Silent p.I285I 0.36 TCGA-06-2562-01 4 42505527 42505527 G C ATP8A1 Missense_Mutation p.H697Q 0.35 deleterious(0.02) possibly_damaging(0.455) TCGA-06-2562-01 4 72316924 72316924 G A SLC4A4 Missense_Mutation p.G410R 0.31 tolerated(0.47) benign(0.102) TCGA-06-2562-01 4 76797562 76797562 G A PPEF2 Missense_Mutation p.R400W 0.34 tolerated(0.11) benign(0.007) TCGA-06-2562-01 4 864620 864620 C T GAK Silent p.V709V 0.36 TCGA-06-2562-01 4 91321221 91321221 A G CCSER1 Missense_Mutation p.D515G 0.19 deleterious(0) probably_damaging(0.998) TCGA-06-2562-01 5 11565132 11565132 C T CTNND2 Missense_Mutation p.A71T 0.29 tolerated(0.13) possibly_damaging(0.776) TCGA-06-2562-01 5 120021968 120021968 C A PRR16 Missense_Mutation p.P137Q 0.38 deleterious_low_confidence(0.04) benign(0.077) TCGA-06-2562-01 5 156186311 156186311 C T SGCD Silent p.F261F 0.35 TCGA-06-2562-01 5 178552111 178552111 G A ADAMTS2 Missense_Mutation p.R941C 0.35 deleterious(0.01) possibly_damaging(0.903) TCGA-06-2562-01 5 67591125 67591125 T C PIK3R1 Missense_Mutation p.L573P 0.31 deleterious(0) probably_damaging(0.995) TCGA-06-2562-01 6 106764059 106764059 G A ATG5 Nonsense_Mutation p.R9* 0.30 TCGA-06-2562-01 6 165706785 165706785 C G C6orf118 Intron 0.38 TCGA-06-2562-01 6 28402496 28402496 G C ZSCAN23 Missense_Mutation p.Q306E 0.55 deleterious(0.01) benign(0.052) TCGA-06-2562-01 6 30570090 30570090 C T PPP1R10 Missense_Mutation p.S779N 0.38 tolerated_low_confidence(1) unknown(0) TCGA-06-2562-01 6 99856145 99856145 C T PNISR Missense_Mutation p.A226T 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-06-2562-01 7 100336230 100336230 C T ZAN Missense_Mutation p.P254S 0.21 probably_damaging(0.998) TCGA-06-2562-01 7 128415497 128415497 T A OPN1SW Silent p.V116V 0.13 TCGA-06-2562-01 7 138854079 138854079 A G TTC26 Silent p.G350G 0.26 TCGA-06-2562-01 7 18066565 18066565 T C PRPS1L1 Missense_Mutation p.M281V 0.31 tolerated(0.33) benign(0.001) TCGA-06-2562-01 7 47867036 47867036 G C PKD1L1 Missense_Mutation p.L2256V 0.13 deleterious(0) possibly_damaging(0.788) TCGA-06-2562-01 7 71252855 71252855 C T CALN1 Missense_Mutation p.V231I 0.26 deleterious(0) probably_damaging(0.981) TCGA-06-2562-01 8 119592961 119592961 G A SAMD12 Missense_Mutation p.T62M 0.35 tolerated(0.14) benign(0.01) TCGA-06-2562-01 9 112694260 112694260 C T PALM2-AKAP2 Nonsense_Mutation p.R150* 0.54 TCGA-06-2562-01 9 115652657 115652657 C T SLC46A2 Missense_Mutation p.R102H 0.23 deleterious(0.01) benign(0.303) TCGA-06-2562-01 9 71606125 71606125 C T PIP5K1B Silent p.N524N 0.30 TCGA-06-2562-01 X 138679647 138679647 A G MCF2 Missense_Mutation p.M752T 0.73 deleterious(0) probably_damaging(0.998) TCGA-06-2562-01 X 69253319 69253319 C T EDA Missense_Mutation p.R289C 0.81 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-06-2563-01 10 94267958 94267958 C G IDE Missense_Mutation p.W355C 0.41 deleterious(0) probably_damaging(1) TCGA-06-2563-01 11 233173 233173 A C SIRT3 Missense_Mutation p.D172E 0.39 tolerated(0.05) benign(0.004) TCGA-06-2563-01 11 5411176 5411176 C G OR51M1 Missense_Mutation p.S183C 0.41 deleterious(0.02) benign(0.006) TCGA-06-2563-01 11 61048379 61048379 C T VWCE Silent p.R372R 0.44 TCGA-06-2563-01 11 8008712 8008712 G A EIF3F 5'UTR 0.05 TCGA-06-2563-01 12 10224014 10224014 C T CLEC1A Missense_Mutation p.R254H 0.35 tolerated(0.47) benign(0.108) TCGA-06-2563-01 12 108600179 108600179 C T WSCD2 Missense_Mutation p.R166W 0.33 deleterious(0.02) probably_damaging(1) TCGA-06-2563-01 12 130184469 130184469 C T TMEM132D Missense_Mutation p.R285H 0.41 deleterious(0.05) benign(0.073) TCGA-06-2563-01 12 53343221 53343221 C T KRT18 Silent p.N88N 0.36 TCGA-06-2563-01 12 6463925 6463925 G T SCNN1A Nonsense_Mutation p.Y470* 0.40 TCGA-06-2563-01 12 71094985 71094985 G T PTPRR Silent p.R376R 0.37 TCGA-06-2563-01 13 114502323 114502323 C G TMEM255B Silent p.P118P 0.53 TCGA-06-2563-01 13 31903811 31903811 G A B3GALTL 3'UTR 0.33 TCGA-06-2563-01 14 100135217 100135217 G A HHIPL1 Intron 0.56 TCGA-06-2563-01 14 20692418 20692418 C A OR11H6 Missense_Mutation p.L184I 0.56 deleterious(0.01) probably_damaging(1) TCGA-06-2563-01 14 47120841 47120841 G - RPL10L Frame_Shift_Del p.F34Lfs*44 0.38 TCGA-06-2563-01 15 42106769 42106769 G A MAPKBP1 Silent p.A340A 0.41 TCGA-06-2563-01 15 42111074 42111074 G A MAPKBP1 Missense_Mutation p.R743H 0.38 deleterious(0.04) probably_damaging(0.999) TCGA-06-2563-01 15 50339659 50339659 A T ATP8B4 Missense_Mutation p.D30E 0.37 tolerated(0.12) benign(0.118) TCGA-06-2563-01 16 1536134 1536134 C T PTX4 Missense_Mutation p.D410N 0.37 deleterious(0) possibly_damaging(0.843) TCGA-06-2563-01 16 21033373 21033373 C T DNAH3 Missense_Mutation p.R1899H 0.49 tolerated(0.1) benign(0.002) TCGA-06-2563-01 16 2817214 2817214 G C SRRM2 Missense_Mutation p.A2229P 0.41 probably_damaging(0.998) TCGA-06-2563-01 17 17943061 17943061 G A GID4 Missense_Mutation p.G95S 0.44 tolerated(0.33) benign(0.03) TCGA-06-2563-01 17 21319772 21319772 A T KCNJ12 Missense_Mutation p.N373I 0.12 deleterious(0.04) benign(0.43) TCGA-06-2563-01 17 35614745 35614745 C T ACACA Missense_Mutation p.R569H 0.50 deleterious(0.01) probably_damaging(0.997) TCGA-06-2563-01 17 39503142 39503142 C T KRT33A Missense_Mutation p.R277H 0.40 deleterious(0.03) possibly_damaging(0.721) TCGA-06-2563-01 17 39681243 39681243 G A KRT19 Missense_Mutation p.T171M 0.37 deleterious(0.04) benign(0.249) TCGA-06-2563-01 17 48614388 48614388 G A EPN3 Silent p.E157E 0.25 TCGA-06-2563-01 17 7404279 7404279 G A POLR2A Silent p.E634E 0.35 TCGA-06-2563-01 17 7578541 7578541 A G TP53 Missense_Mutation p.L130P 0.35 deleterious(0) probably_damaging(1) TCGA-06-2563-01 18 13884582 13884582 C T MC2R 3'UTR 0.33 TCGA-06-2563-01 19 3759564 3759564 T C APBA3 Missense_Mutation p.Q204R 0.17 tolerated(0.48) benign(0.003) TCGA-06-2563-01 19 43433692 43433692 A T PSG7 Missense_Mutation p.L204Q 0.28 deleterious(0) probably_damaging(0.947) TCGA-06-2563-01 19 49573232 49573232 C A KCNA7 3'UTR 0.54 TCGA-06-2563-01 19 50945481 50945481 C A MYBPC2 Silent p.G271G 0.22 TCGA-06-2563-01 19 6366351 6366351 C T CLPP Missense_Mutation p.T213I 0.23 deleterious(0) probably_damaging(1) TCGA-06-2563-01 19 6772889 6772889 C A VAV1 Missense_Mutation p.T24N 0.23 tolerated(0.08) probably_damaging(0.977) TCGA-06-2563-01 1 145558841 145558841 C T ANKRD35 Missense_Mutation p.R154C 0.39 deleterious(0.03) benign(0) TCGA-06-2563-01 1 152957774 152957774 A T SPRR1A Missense_Mutation p.Q23L 0.38 tolerated(0.12) unknown(0) TCGA-06-2563-01 1 160797640 160797640 C T LY9 3'UTR 0.49 TCGA-06-2563-01 1 207195575 207195575 C T C1orf116 Missense_Mutation p.G512S 0.50 tolerated(0.98) benign(0.009) TCGA-06-2563-01 1 228612678 228612678 G A HIST3H3 Missense_Mutation p.R117W 0.40 deleterious_low_confidence(0) probably_damaging(0.958) TCGA-06-2563-01 1 228645127 228645127 C T HIST3H2A Silent p.%3D 0.50 TCGA-06-2563-01 1 2411404 2411404 G A PLCH2 Missense_Mutation p.R141H 0.49 deleterious(0) probably_damaging(0.993) TCGA-06-2563-01 1 247695195 247695195 A G OR2C3 Missense_Mutation p.F207L 0.40 tolerated(0.09) benign(0.167) TCGA-06-2563-01 1 36028235 36028235 G A NCDN Splice_Site p.X462_splice 0.41 TCGA-06-2563-01 1 38181717 38181717 C T EPHA10 3'UTR 0.50 TCGA-06-2563-01 1 75108729 75108729 C A C1orf173 Missense_Mutation p.E99D 0.38 deleterious(0.01) possibly_damaging(0.894) TCGA-06-2563-01 20 2298103 2298103 C A TGM3 Missense_Mutation p.P319T 0.27 tolerated(1) probably_damaging(0.988) TCGA-06-2563-01 20 49221267 49221267 C T FAM65C Missense_Mutation p.G330D 0.04 deleterious(0.01) benign(0.36) TCGA-06-2563-01 21 45789188 45789188 G A TRPM2 Missense_Mutation p.G245S 0.40 deleterious(0.02) probably_damaging(1) TCGA-06-2563-01 2 160755444 160755444 C T LY75-CD302 Missense_Mutation p.R74Q 0.38 deleterious(0) probably_damaging(0.947) TCGA-06-2563-01 2 170090092 170090092 G A LRP2 Missense_Mutation p.R1643W 0.34 possibly_damaging(0.836) TCGA-06-2563-01 2 230663714 230663714 A C TRIP12 Missense_Mutation p.L1045W 0.28 deleterious(0) probably_damaging(0.962) TCGA-06-2563-01 2 230663734 230663734 T C TRIP12 Silent p.K1038K 0.30 TCGA-06-2563-01 2 230663763 230663763 T C TRIP12 Missense_Mutation p.K1029E 0.33 tolerated(0.22) benign(0.444) TCGA-06-2563-01 3 14558595 14558595 C T GRIP2 RNA 0.32 TCGA-06-2563-01 3 52255367 52255367 G T TLR9 Missense_Mutation p.R1143S 0.47 deleterious(0.01) benign(0.094) TCGA-06-2563-01 4 122075742 122075742 C G TNIP3 Missense_Mutation p.K229N 0.43 deleterious(0.01) probably_damaging(0.998) TCGA-06-2563-01 4 164272781 164272781 C G NPY5R 3'UTR 0.36 TCGA-06-2563-01 5 101816005 101816005 G T SLCO6A1 Missense_Mutation p.F164L 0.39 deleterious(0.01) benign(0.372) TCGA-06-2563-01 5 129519964 129519964 G A CHSY3 Missense_Mutation p.G377S 0.45 tolerated(0.15) probably_damaging(0.997) TCGA-06-2563-01 5 147784293 147784293 T G FBXO38 Missense_Mutation p.L213R 0.47 deleterious(0) possibly_damaging(0.667) TCGA-06-2563-01 5 168212916 168212916 G A SLIT3 Silent p.L383L 0.32 TCGA-06-2563-01 5 176638305 176638305 G A NSD1 Missense_Mutation p.G969R 0.44 deleterious_low_confidence(0.04) benign(0.007) TCGA-06-2563-01 5 865623 865623 G C BRD9 Missense_Mutation p.D533E 0.33 tolerated(1) benign(0.02) TCGA-06-2563-01 6 155572049 155572049 A C TIAM2 Silent p.V1318V 0.40 TCGA-06-2563-01 6 36259268 36259268 G A PNPLA1 Missense_Mutation p.R126H 0.41 deleterious(0) probably_damaging(0.996) TCGA-06-2563-01 6 41753983 41753983 A G PRICKLE4 Missense_Mutation p.S234G 0.44 tolerated(0.95) benign(0.008) TCGA-06-2563-01 7 107427951 107427951 G C SLC26A3 Missense_Mutation p.L247V 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-06-2563-01 7 142649696 142649696 C A KEL Missense_Mutation p.G368V 0.35 deleterious(0.01) probably_damaging(0.992) TCGA-06-2563-01 7 150649545 150649545 C T KCNH2 Missense_Mutation p.D509N 0.36 deleterious(0) probably_damaging(0.949) TCGA-06-2563-01 7 27185192 27185192 C T HOXA6 3'UTR 0.26 TCGA-06-2563-01 7 43485067 43485067 G A HECW1 Missense_Mutation p.A766T 0.41 tolerated_low_confidence(0.41) benign(0.001) TCGA-06-2563-01 7 50121433 50121433 G A ZPBP Nonsense_Mutation p.R91* 0.35 TCGA-06-2563-01 7 55221710 55221710 C T EGFR Missense_Mutation p.R252C 0.95 deleterious(0.03) possibly_damaging(0.899) TCGA-06-2563-01 7 76922321 76922321 T C CCDC146 Missense_Mutation p.L823P 0.32 deleterious(0) possibly_damaging(0.847) TCGA-06-2563-01 7 82387898 82387898 G A PCLO Missense_Mutation p.T5141M 0.26 unknown(0) TCGA-06-2563-01 8 104922392 104922392 C T RIMS2 Missense_Mutation p.T552M 0.38 deleterious_low_confidence(0) possibly_damaging(0.585) TCGA-06-2563-01 8 113988286 113988286 A T CSMD3 Silent p.P374P 0.45 TCGA-06-2563-01 8 65517309 65517309 C T CYP7B1 Missense_Mutation p.R388Q 0.48 deleterious(0) probably_damaging(1) TCGA-06-2563-01 X 108673542 108673542 G A GUCY2F Silent p.F595F 0.38 TCGA-06-2563-01 X 119565295 119565295 G A LAMP2 Intron 0.41 TCGA-06-2563-01 X 122532507 122532507 C T GRIA3 Silent p.H311H 0.35 TCGA-06-2563-01 X 128657225 128657225 G A SMARCA1 Silent p.A41A 0.33 TCGA-06-2563-01 X 129370597 129370598 TG - ZNF280C Frame_Shift_Del p.S170Lfs*10 0.34 TCGA-06-2563-01 X 140995644 140995644 C T MAGEC1 Silent p.P818P 0.38 TCGA-06-2563-01 X 146318509 146318509 C A MIR508 RNA 0.43 TCGA-06-2563-01 X 148035181 148035181 C T AFF2 Missense_Mutation p.S490L 0.39 deleterious(0) probably_damaging(0.994) TCGA-06-2563-01 X 19968952 19968952 C T CXorf23 Missense_Mutation p.R555Q 0.38 deleterious(0) probably_damaging(0.991) TCGA-06-2563-01 X 67421527 67421527 T C OPHN1 Missense_Mutation p.Y320C 0.43 deleterious(0.03) possibly_damaging(0.535) TCGA-06-2563-01 X 78011289 78011289 C A LPAR4 Missense_Mutation p.P308H 0.36 deleterious(0) probably_damaging(1) TCGA-06-2563-01 X 84634326 84634326 T C POF1B Missense_Mutation p.K45R 0.35 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-06-2564-01 11 32875008 32875008 C T PRRG4 Missense_Mutation p.P206S 0.36 tolerated(0.1) probably_damaging(0.998) TCGA-06-2564-01 11 89531694 89531694 G A TRIM49 Silent p.F321F 0.20 TCGA-06-2564-01 12 123214178 123214178 C T HCAR1 Missense_Mutation p.V237M 0.49 deleterious(0.03) probably_damaging(0.951) TCGA-06-2564-01 12 133732279 133732279 A G ZNF10 Silent p.Q149Q 0.32 TCGA-06-2564-01 12 133732444 133732444 T A ZNF10 Missense_Mutation p.H204Q 0.29 tolerated(0.33) benign(0.282) TCGA-06-2564-01 12 133732460 133732460 A G ZNF10 Missense_Mutation p.S210G 0.27 tolerated(0.49) benign(0) TCGA-06-2564-01 12 49448322 49448322 C T KMT2D Missense_Mutation p.G130E 0.52 unknown(0) TCGA-06-2564-01 12 7026819 7026819 C G ENO2 Missense_Mutation p.P129A 0.44 deleterious_low_confidence(0) possibly_damaging(0.817) TCGA-06-2564-01 12 85492269 85492269 C T LRRIQ1 Silent p.G1008G 0.36 TCGA-06-2564-01 12 85546073 85546073 G - LRRIQ1 Frame_Shift_Del p.E1449Nfs*3 0.36 TCGA-06-2564-01 14 19566060 19566060 C G POTEG Silent p.V368V 0.07 TCGA-06-2564-01 14 21966635 21966635 A G TOX4 3'UTR 0.38 TCGA-06-2564-01 14 22266051 22266051 G A TRAV8-1 Missense_Mutation p.V112M 0.31 tolerated(0.05) possibly_damaging(0.567) TCGA-06-2564-01 14 24801072 24801072 G A ADCY4 Silent p.R197R 0.38 TCGA-06-2564-01 14 62547865 62547865 G A SYT16 Missense_Mutation p.R436H 0.44 deleterious(0) probably_damaging(1) TCGA-06-2564-01 15 45723253 45723253 G A C15orf48 Missense_Mutation p.A31T 0.29 deleterious(0.01) possibly_damaging(0.558) TCGA-06-2564-01 15 45847814 45847814 G A RP11-96O20.2 5'Flank 0.22 TCGA-06-2564-01 15 74564064 74564064 C T CCDC33 Silent p.N189N 0.25 TCGA-06-2564-01 15 74573074 74573074 C T CCDC33 Missense_Mutation p.R319C 0.32 deleterious(0.05) benign(0) TCGA-06-2564-01 16 31374348 31374348 C T ITGAX Silent p.Y484Y 0.38 TCGA-06-2564-01 16 46755087 46755087 C T MYLK3 Missense_Mutation p.V645I 0.31 tolerated(0.07) benign(0.102) TCGA-06-2564-01 17 12666835 12666835 G A MYOCD Silent p.P945P 0.49 TCGA-06-2564-01 17 21319341 21319341 C T KCNJ12 Silent p.R229R 0.16 TCGA-06-2564-01 17 7187697 7187697 G A SLC2A4 Silent p.K242K 0.33 TCGA-06-2564-01 17 74473065 74473065 C T RHBDF2 Missense_Mutation p.G350D 0.40 deleterious(0.01) possibly_damaging(0.901) TCGA-06-2564-01 18 51809324 51809324 G A POLI Missense_Mutation p.R305H 0.25 tolerated(0.16) benign(0.057) TCGA-06-2564-01 19 19030579 19030579 C T DDX49 Missense_Mutation p.S10L 0.33 tolerated(0.07) benign(0.197) TCGA-06-2564-01 19 31767726 31767726 G A TSHZ3 Silent p.Y991Y 0.33 TCGA-06-2564-01 19 3735631 3735631 C T TJP3 Missense_Mutation p.R361W 0.04 tolerated(0.08) benign(0.001) TCGA-06-2564-01 19 46027874 46027874 A G VASP Missense_Mutation p.T335A 0.04 tolerated(0.48) benign(0.014) TCGA-06-2564-01 19 6760704 6760704 G A SH2D3A Missense_Mutation p.R122C 0.38 tolerated(0.1) benign(0.035) TCGA-06-2564-01 19 8154483 8154483 G A FBN3 Missense_Mutation p.R2108C 0.34 deleterious(0.01) probably_damaging(0.929) TCGA-06-2564-01 1 145440909 145440909 C T TXNIP Silent p.P332P 0.27 TCGA-06-2564-01 1 152278855 152278855 C T FLG Missense_Mutation p.S2836N 0.14 possibly_damaging(0.483) TCGA-06-2564-01 1 22333423 22333423 G A CELA3A Missense_Mutation p.V139I 0.37 tolerated(0.74) probably_damaging(0.946) TCGA-06-2564-01 1 29344851 29344851 G A EPB41 Missense_Mutation p.D341N 0.33 deleterious(0) probably_damaging(0.997) TCGA-06-2564-01 1 36505436 36505436 G A AGO3 Missense_Mutation p.V630I 0.37 deleterious(0.03) probably_damaging(0.913) TCGA-06-2564-01 1 38197175 38197175 C T EPHA10 Missense_Mutation p.R524H 0.37 tolerated(0.55) probably_damaging(0.972) TCGA-06-2564-01 1 89525904 89525904 G A GBP1 Silent p.T98T 0.42 TCGA-06-2564-01 20 47688965 47688965 C T CSE1L Missense_Mutation p.T304M 0.31 deleterious(0.04) probably_damaging(0.997) TCGA-06-2564-01 20 62571796 62571796 C T UCKL1 Missense_Mutation p.V449M 0.32 deleterious(0) probably_damaging(0.975) TCGA-06-2564-01 21 45993777 45993777 G A KRTAP10-4 Missense_Mutation p.A48T 0.21 tolerated(0.27) benign(0.137) TCGA-06-2564-01 22 40080363 40080363 G T CACNA1I Nonsense_Mutation p.E1963* 0.37 TCGA-06-2564-01 22 41969718 41969718 C T CSDC2 Missense_Mutation p.S79L 0.05 deleterious(0.01) possibly_damaging(0.851) TCGA-06-2564-01 2 101650173 101650173 C G TBC1D8 Missense_Mutation p.V536L 0.32 tolerated(0.06) possibly_damaging(0.717) TCGA-06-2564-01 2 128707447 128707447 G C SAP130 Silent p.V957V 0.22 TCGA-06-2564-01 2 179419816 179419816 G A TTN Missense_Mutation p.S29457F 0.38 TCGA-06-2564-01 2 198966043 198966043 C T PLCL1 Missense_Mutation p.A985V 0.36 deleterious(0) possibly_damaging(0.877) TCGA-06-2564-01 2 227872085 227872085 G A COL4A4 Missense_Mutation p.R1677C 0.37 unknown(0) TCGA-06-2564-01 3 10387792 10387792 G A ATP2B2 Missense_Mutation p.R812W 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-2564-01 3 172165997 172165997 C T GHSR Silent p.S69S 0.49 TCGA-06-2564-01 3 45814090 45814090 C T SLC6A20 Silent p.A200A 0.30 TCGA-06-2564-01 4 187541182 187541183 - A FAT1 Frame_Shift_Ins p.Y2187Lfs*21 0.30 TCGA-06-2564-01 4 70599914 70599914 A G SULT1B1 Silent p.N148N 0.35 TCGA-06-2564-01 4 77949846 77949846 G A SEPT11 Missense_Mutation p.E340K 0.40 tolerated(0.06) benign(0.045) TCGA-06-2564-01 5 132652162 132652162 C T FSTL4 Missense_Mutation p.E198K 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-06-2564-01 5 137682706 137682706 G C FAM53C 3'UTR 0.39 TCGA-06-2564-01 5 170819769 170819769 A C NPM1 Missense_Mutation p.L136F 0.32 tolerated(0.16) benign(0.33) TCGA-06-2564-01 5 31401438 31401438 G C DROSHA 3'UTR 0.38 TCGA-06-2564-01 6 116263659 116263659 G A FRK Missense_Mutation p.T479I 0.33 deleterious(0) possibly_damaging(0.87) TCGA-06-2564-01 6 17629357 17629357 C T NUP153 Missense_Mutation p.G1025S 0.35 deleterious(0.01) possibly_damaging(0.786) TCGA-06-2564-01 6 35923059 35923059 G A SLC26A8 Missense_Mutation p.A701V 0.37 tolerated(0.16) benign(0.036) TCGA-06-2564-01 7 129357140 129357140 G A NRF1 Missense_Mutation p.A383T 0.24 tolerated(0.2) benign(0.122) TCGA-06-2564-01 7 129662254 129662254 C T ZC3HC1 Missense_Mutation p.D449N 0.23 tolerated(0.13) benign(0.003) TCGA-06-2564-01 7 150921937 150921937 G A ABCF2 Nonsense_Mutation p.Q98* 0.23 TCGA-06-2564-01 7 24742379 24742379 C T DFNA5 Silent p.L419L 0.19 TCGA-06-2564-01 7 32623401 32623401 C A AVL9 Intron 0.18 TCGA-06-2564-01 7 47440469 47440469 C T TNS3 Missense_Mutation p.V256I 0.22 deleterious(0.04) benign(0.179) TCGA-06-2564-01 7 80546128 80546128 G A SEMA3C 5'UTR 0.22 TCGA-06-2564-01 8 100732741 100732741 G A VPS13B Missense_Mutation p.D2301N 0.06 deleterious(0) benign(0.018) TCGA-06-2564-01 8 57878872 57878872 C T IMPAD1 Missense_Mutation p.R229H 0.40 deleterious(0.02) probably_damaging(0.985) TCGA-06-2564-01 8 72969169 72969169 G A TRPA1 Nonsense_Mutation p.R393* 0.37 TCGA-06-2564-01 8 98735243 98735243 A G MTDH Missense_Mutation p.N553S 0.33 deleterious(0) probably_damaging(0.997) TCGA-06-2564-01 9 112900147 112900147 T A PALM2-AKAP2 Missense_Mutation p.F775I 0.40 tolerated(0.11) possibly_damaging(0.557) TCGA-06-2564-01 9 113189912 113189912 G T SVEP1 Missense_Mutation p.N1978K 0.33 probably_damaging(1) TCGA-06-2564-01 9 115759611 115759611 C T ZNF883 RNA 0.33 TCGA-06-2564-01 9 127262849 127262849 C T NR5A1 Silent p.P130P 0.51 TCGA-06-2564-01 9 97333780 97333780 G A FBP2 Silent p.S177S 0.05 TCGA-06-2564-01 9 98669532 98669532 T G ERCC6L2 Nonsense_Mutation p.L267* 0.36 TCGA-06-2564-01 X 109694900 109694900 C T RGAG1 Missense_Mutation p.T352M 0.06 tolerated(0.24) benign(0.12) TCGA-06-2564-01 X 1584460 1584460 G A P2RY8 Missense_Mutation p.T331M 0.42 tolerated(0.49) benign(0.002) TCGA-06-2565-01 10 102697209 102697209 A G FAM178A Silent p.T829T 0.81 TCGA-06-2565-01 10 22617609 22617609 C T BMI1 Silent p.D184D 0.78 TCGA-06-2565-01 10 70196997 70196997 C T DNA2 Missense_Mutation p.E559K 0.77 deleterious(0) probably_damaging(0.976) TCGA-06-2565-01 10 89692818 89692818 T C PTEN Missense_Mutation p.I101T 0.17 deleterious(0) probably_damaging(0.943) TCGA-06-2565-01 11 118376191 118376191 C T KMT2A Missense_Mutation p.P3195L 0.03 benign(0.116) TCGA-06-2565-01 11 5969282 5969282 G A OR56A3 Missense_Mutation p.G236S 0.04 tolerated(0.11) benign(0.438) TCGA-06-2565-01 12 100478382 100478382 C G UHRF1BP1L Missense_Mutation p.G387A 0.37 tolerated(0.71) benign(0.146) TCGA-06-2565-01 12 117655934 117655934 G A NOS1 Silent p.V1436V 0.41 TCGA-06-2565-01 12 54914540 54914540 G A NCKAP1L Missense_Mutation p.R563H 0.04 deleterious(0) probably_damaging(0.995) TCGA-06-2565-01 12 56429285 56429285 C T IKZF4 3'UTR 0.41 TCGA-06-2565-01 12 68720320 68720320 T A MDM1 Intron 0.54 TCGA-06-2565-01 12 69987309 69987309 C T CCT2 Missense_Mutation p.P300S 0.04 deleterious(0) probably_damaging(0.997) TCGA-06-2565-01 12 7531814 7531814 C T CD163L1 Missense_Mutation p.V711M 0.45 tolerated(0.11) possibly_damaging(0.643) TCGA-06-2565-01 14 103986328 103986328 T G CKB Missense_Mutation p.D340A 0.37 tolerated(0.13) probably_damaging(0.944) TCGA-06-2565-01 14 106586332 106586332 G A IGHV3-13 Silent p.Y51Y 0.44 TCGA-06-2565-01 14 106845486 106845486 C T IGHV3-35 Missense_Mutation p.G63E 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.537) TCGA-06-2565-01 14 59113060 59113060 C A DACT1 Missense_Mutation p.H573Q 0.06 tolerated(0.59) benign(0.007) TCGA-06-2565-01 15 71535188 71535188 G A THSD4 Missense_Mutation p.G222E 0.45 tolerated(1) benign(0.05) TCGA-06-2565-01 17 1549644 1549644 C T RILP 3'UTR 0.32 TCGA-06-2565-01 17 38938701 38938701 G A KRT27 Silent p.C15C 0.15 TCGA-06-2565-01 17 39092876 39092876 C T KRT23 5'UTR 0.51 TCGA-06-2565-01 17 5331585 5331585 A C RPAIN Missense_Mutation p.L228F 0.27 tolerated_low_confidence(0.3) benign(0.009) TCGA-06-2565-01 17 7190063 7190063 C T SLC2A4 3'UTR 0.50 TCGA-06-2565-01 18 33848678 33848678 T C MOCOS 3'UTR 0.36 TCGA-06-2565-01 18 59483671 59483672 AG - RNF152 Frame_Shift_Del p.L9Afs*129 0.25 TCGA-06-2565-01 19 1623996 1623996 G A TCF3 Missense_Mutation p.T168M 0.17 tolerated(0.22) benign(0.433) TCGA-06-2565-01 19 45015149 45015149 G T CEACAM20 RNA 0.32 TCGA-06-2565-01 19 54617886 54617886 C T TFPT Missense_Mutation p.R73H 0.30 tolerated(0.11) benign(0.201) TCGA-06-2565-01 1 201028369 201028369 G A CACNA1S Missense_Mutation p.T1158I 0.40 deleterious(0) possibly_damaging(0.794) TCGA-06-2565-01 1 228473808 228473808 G A OBSCN Missense_Mutation p.E3441K 0.20 benign(0.247) TCGA-06-2565-01 1 248028031 248028031 C T TRIM58 Missense_Mutation p.R181C 0.34 deleterious(0.04) benign(0.022) TCGA-06-2565-01 1 70611582 70611582 T C LRRC40 Silent p.L570L 0.53 TCGA-06-2565-01 20 44431987 44431987 C A DNTTIP1 Silent p.S191S 0.26 TCGA-06-2565-01 21 43539379 43539379 C T UMODL1 Silent p.T1006T 0.25 TCGA-06-2565-01 21 45679526 45679526 C T DNMT3L Missense_Mutation p.A74T 0.24 tolerated(0.28) benign(0.001) TCGA-06-2565-01 22 31523358 31523358 G A INPP5J Missense_Mutation p.V175M 0.39 deleterious(0) probably_damaging(0.997) TCGA-06-2565-01 22 31957290 31957290 C T SFI1 Missense_Mutation p.T226M 0.36 tolerated(0.11) benign(0.002) TCGA-06-2565-01 22 46725343 46725343 T C GTSE1 Missense_Mutation p.F672S 0.46 deleterious(0) probably_damaging(0.945) TCGA-06-2565-01 2 109092033 109092033 A G GCC2 Missense_Mutation p.N968S 0.41 tolerated(0.19) benign(0.003) TCGA-06-2565-01 2 31178570 31178570 C T GALNT14 Missense_Mutation p.A195T 0.40 deleterious(0) possibly_damaging(0.853) TCGA-06-2565-01 2 33482448 33482448 A G LTBP1 Silent p.V755V 0.05 TCGA-06-2565-01 2 98351132 98351132 G A ZAP70 Missense_Mutation p.G347S 0.53 deleterious(0) probably_damaging(1) TCGA-06-2565-01 3 111356989 111356989 C T CD96 Missense_Mutation p.T500M 0.47 deleterious(0) benign(0.031) TCGA-06-2565-01 3 195599202 195599203 CT - TNK2 Frame_Shift_Del p.G529Afs*5 0.58 TCGA-06-2565-01 3 32030908 32030908 G C ZNF860 Missense_Mutation p.E113Q 0.33 tolerated(0.07) benign(0.091) TCGA-06-2565-01 3 38639416 38639416 C T SCN5A Missense_Mutation p.R689H 0.41 tolerated(0.18) benign(0.001) TCGA-06-2565-01 3 45785181 45785181 G A SACM1L 3'UTR 0.43 TCGA-06-2565-01 4 88987002 88987002 C T PKD2 Nonsense_Mutation p.Q777* 0.48 TCGA-06-2565-01 5 127728882 127728882 C T FBN2 Missense_Mutation p.V471I 0.35 tolerated(0.47) benign(0.001) TCGA-06-2565-01 5 140711985 140711985 G A PCDHGA1 Silent p.A578A 0.44 TCGA-06-2565-01 5 17275820 17275820 C T BASP1 Silent p.D165D 0.32 TCGA-06-2565-01 5 5222920 5222920 T G ADAMTS16 Missense_Mutation p.W542G 0.34 deleterious(0) probably_damaging(0.912) TCGA-06-2565-01 6 46826170 46826170 G A GPR116 Missense_Mutation p.T1157M 0.39 tolerated(0.19) benign(0.199) TCGA-06-2565-01 7 135311110 135311111 - T NUP205 Splice_Site p.X1598_splice 0.31 TCGA-06-2565-01 7 55211080 55211080 G A EGFR Missense_Mutation p.R108K 0.94 deleterious(0) probably_damaging(0.998) TCGA-06-2565-01 7 55240690 55240690 C G EGFR Missense_Mutation p.S645C 0.04 tolerated(0.18) possibly_damaging(0.886) TCGA-06-2565-01 7 66482862 66482862 G A TYW1 Nonsense_Mutation p.W198* 0.50 TCGA-06-2565-01 7 80290463 80290463 C T CD36 Silent p.F122F 0.38 TCGA-06-2565-01 7 83034830 83034830 C - SEMA3E Frame_Shift_Del p.V312Ffs*13 0.32 TCGA-06-2565-01 7 93113315 93113315 G A CALCR Intron 0.54 TCGA-06-2565-01 8 103662460 103662460 G A KLF10 Missense_Mutation p.A448V 0.43 deleterious(0.03) possibly_damaging(0.685) TCGA-06-2565-01 8 41521227 41521227 C T ANK1 Missense_Mutation p.V1851M 0.43 deleterious_low_confidence(0.01) probably_damaging(0.952) TCGA-06-2565-01 8 55537454 55537454 C T RP1 Nonsense_Mutation p.R338* 0.06 TCGA-06-2565-01 8 70650427 70650427 G T SLCO5A1 Missense_Mutation p.A424E 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-2565-01 X 115592904 115592904 G A CT83 3'UTR 0.91 TCGA-06-2565-01 X 131212246 131212246 C T FRMD7 Missense_Mutation p.R600H 0.86 tolerated(0.14) benign(0.004) TCGA-06-2565-01 X 135301831 135301831 C T MAP7D3 Splice_Site p.X829_splice 0.93 TCGA-06-2565-01 X 148038125 148038125 G A AFF2 Silent p.K850K 0.06 TCGA-06-2567-01 10 118464692 118464692 G A HSPA12A Missense_Mutation p.T75I 0.47 tolerated(0.11) benign(0.021) TCGA-06-2567-01 10 79581860 79581860 C G DLG5 Splice_Site p.X795_splice 0.04 TCGA-06-2567-01 11 121444999 121444999 G A SORL1 Silent p.G1129G 0.41 TCGA-06-2567-01 11 56380101 56380101 C T OR5M1 Missense_Mutation p.R293Q 0.35 deleterious(0.01) possibly_damaging(0.564) TCGA-06-2567-01 11 56431862 56431862 G A OR5AR1 Missense_Mutation p.R234H 0.43 deleterious(0.02) benign(0.022) TCGA-06-2567-01 11 6589084 6589084 T G DNHD1 Nonsense_Mutation p.Y4115* 0.33 TCGA-06-2567-01 12 100711649 100711649 C T SCYL2 Silent p.N447N 0.37 TCGA-06-2567-01 12 117977605 117977605 G - KSR2 Frame_Shift_Del p.L536Sfs*61 0.36 TCGA-06-2567-01 12 130841563 130841563 G A PIWIL1 Missense_Mutation p.R502Q 0.30 tolerated(0.12) possibly_damaging(0.775) TCGA-06-2567-01 12 57988971 57988971 G A PIP4K2C Missense_Mutation p.R112H 0.34 deleterious(0.03) benign(0.273) TCGA-06-2567-01 12 75441962 75441962 G A KCNC2 Missense_Mutation p.T584M 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.836) TCGA-06-2567-01 14 73974950 73974950 C T HEATR4 Missense_Mutation p.G590D 0.29 deleterious(0) probably_damaging(1) TCGA-06-2567-01 15 45007798 45007801 TCTA - B2M Frame_Shift_Del p.Y83Sfs*19 0.40 TCGA-06-2567-01 15 45249150 45249150 G C C15orf43 Missense_Mutation p.D41H 0.33 deleterious(0) probably_damaging(1) TCGA-06-2567-01 15 74637444 74637444 G A CYP11A1 Missense_Mutation p.A189V 0.47 deleterious(0.03) benign(0.042) TCGA-06-2567-01 16 30960835 30960835 C T ORAI3 Silent p.A75A 0.32 TCGA-06-2567-01 16 3187509 3187509 C T ZNF213 Silent p.P76P 0.47 TCGA-06-2567-01 17 10206539 10206539 A G MYH13 Missense_Mutation p.S1881P 0.38 deleterious(0) benign(0.087) TCGA-06-2567-01 17 16593762 16593762 G A CCDC144A Silent p.P16P 0.16 TCGA-06-2567-01 17 65104714 65104714 G A HELZ Missense_Mutation p.L1540F 0.39 deleterious_low_confidence(0) unknown(0) TCGA-06-2567-01 17 7577127 7577127 C T TP53 Missense_Mutation p.E271K 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-2567-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.37 TCGA-06-2567-01 18 28934952 28934952 C T DSG1 Silent p.S931S 0.37 TCGA-06-2567-01 19 10659590 10659590 G A ATG4D Silent p.A282A 0.41 TCGA-06-2567-01 19 22363176 22363176 G T ZNF676 Missense_Mutation p.P448H 0.37 deleterious(0) possibly_damaging(0.757) TCGA-06-2567-01 19 42558502 42558502 G A GRIK5 Silent p.H342H 0.31 TCGA-06-2567-01 19 54466519 54466519 T G CACNG8 Silent p.T41T 0.31 TCGA-06-2567-01 19 56370584 56370584 G A NLRP4 Missense_Mutation p.V609I 0.32 tolerated(0.29) benign(0.145) TCGA-06-2567-01 19 7707328 7707328 G A STXBP2 Missense_Mutation p.G270R 0.06 deleterious(0) probably_damaging(0.999) TCGA-06-2567-01 1 152082760 152082760 G A TCHH Missense_Mutation p.P978L 0.17 unknown(0) TCGA-06-2567-01 1 248367072 248367072 C T OR2M3 Missense_Mutation p.R235C 0.36 deleterious(0.03) benign(0.013) TCGA-06-2567-01 1 40033169 40033169 A C PABPC4 Intron 0.25 TCGA-06-2567-01 1 82418680 82418680 C T LPHN2 Intron 0.37 TCGA-06-2567-01 1 84874090 84874090 C T DNASE2B Intron 0.54 TCGA-06-2567-01 1 89655829 89655829 C T GBP4 Silent p.T363T 0.38 TCGA-06-2567-01 20 33122583 33122583 A T DYNLRB1 Missense_Mutation p.E77D 0.25 deleterious(0) probably_damaging(0.994) TCGA-06-2567-01 21 19169012 19169012 C T C21orf91 Missense_Mutation p.R184H 0.30 tolerated_low_confidence(0.59) benign(0) TCGA-06-2567-01 21 44296865 44296865 G A WDR4 Silent p.S34S 0.36 TCGA-06-2567-01 21 48071783 48071783 C T PRMT2 Intron 0.45 TCGA-06-2567-01 22 32756314 32756314 G A RFPL3 Missense_Mutation p.G150E 0.05 tolerated(0.08) probably_damaging(0.985) TCGA-06-2567-01 2 220349266 220349266 G A SPEG Missense_Mutation p.G2361S 0.31 probably_damaging(0.999) TCGA-06-2567-01 2 237374203 237374203 C T IQCA1 Missense_Mutation p.V291M 0.40 deleterious(0.05) benign(0.01) TCGA-06-2567-01 3 121647354 121647354 G T SLC15A2 Silent p.V431V 0.39 TCGA-06-2567-01 3 12881804 12881804 G T RPL32 Intron 0.38 TCGA-06-2567-01 3 139098010 139098010 G A COPB2 Silent p.D78D 0.27 TCGA-06-2567-01 3 47619240 47619240 C T CSPG5 Silent p.S92S 0.35 TCGA-06-2567-01 3 98188663 98188663 G A OR5K1 Missense_Mutation p.M81I 0.36 deleterious(0.03) benign(0.001) TCGA-06-2567-01 4 10444692 10444692 C A ZNF518B 3'UTR 0.43 TCGA-06-2567-01 4 68610287 68610287 G A GNRHR Silent p.H247H 0.43 TCGA-06-2567-01 4 75312298 75312298 C T AREG Missense_Mutation p.R37C 0.66 deleterious(0.01) possibly_damaging(0.646) TCGA-06-2567-01 5 52183784 52183784 G A ITGA1 Missense_Mutation p.R304Q 0.38 deleterious(0) probably_damaging(1) TCGA-06-2567-01 6 101054729 101054729 A G ASCC3 Missense_Mutation p.I1644T 0.36 deleterious(0) probably_damaging(0.955) TCGA-06-2567-01 6 139694947 139694947 C T CITED2 Silent p.Q45Q 0.36 TCGA-06-2567-01 6 33153497 33153497 C T COL11A2 Intron 0.39 TCGA-06-2567-01 6 7569486 7569486 C T DSP Missense_Mutation p.T496M 0.36 probably_damaging(0.97) TCGA-06-2567-01 7 103050930 103050930 A T SLC26A5 Missense_Mutation p.F213I 0.28 deleterious(0) benign(0.208) TCGA-06-2567-01 7 130297070 130297070 T C COPG2 Missense_Mutation p.I178V 0.33 tolerated(1) benign(0.001) TCGA-06-2567-01 7 143268908 143268908 G A CTAGE15 5'UTR 0.41 TCGA-06-2567-01 7 27185382 27185382 G C HOXA6 Missense_Mutation p.I199M 0.22 deleterious(0) probably_damaging(0.98) TCGA-06-2567-01 7 37934142 37934142 C T NME8 Nonsense_Mutation p.Q492* 0.33 TCGA-06-2567-01 7 41729233 41729233 C T INHBA 3'UTR 0.16 TCGA-06-2567-01 7 4308166 4308166 C T SDK1 3'UTR 0.38 TCGA-06-2567-01 7 51096735 51096735 T C COBL Silent p.T686T 0.26 TCGA-06-2567-01 7 53104084 53104084 C T POM121L12 Silent p.L240L 0.41 TCGA-06-2567-01 7 55233036 55233036 C T EGFR Missense_Mutation p.P596S 0.04 deleterious(0) possibly_damaging(0.732) TCGA-06-2567-01 7 6797344 6797344 G A RSPH10B2 Silent p.G12G 0.18 TCGA-06-2567-01 7 71571150 71571150 C T CALN1 Missense_Mutation p.R125H 0.23 tolerated(0.09) benign(0.011) TCGA-06-2567-01 8 113529374 113529374 T A CSMD3 Missense_Mutation p.T1549S 0.37 tolerated(0.89) benign(0.145) TCGA-06-2567-01 8 119391929 119391929 C T SAMD12 Silent p.L111L 0.36 TCGA-06-2567-01 8 19177081 19177081 A G SH2D4A Missense_Mutation p.E8G 0.37 deleterious(0) benign(0.15) TCGA-06-2567-01 8 69030839 69030839 C A PREX2 Missense_Mutation p.S1127R 0.46 deleterious(0.03) probably_damaging(0.986) TCGA-06-2567-01 9 125289116 125289116 C T OR1N1 Missense_Mutation p.V153I 0.15 tolerated(0.41) benign(0.016) TCGA-06-2567-01 9 39078395 39078396 AG - CNTNAP3 Frame_Shift_Del p.S1244Cfs*35 0.21 TCGA-06-2567-01 X 10096666 10096666 G T WWC3 Nonsense_Mutation p.E784* 0.77 TCGA-06-2567-01 X 11780954 11780957 AGTT - MSL3 Splice_Site p.X197_splice 0.78 TCGA-06-2569-01 10 126172716 126172716 G A LHPP Missense_Mutation p.R45H 0.19 tolerated(0.08) benign(0.001) TCGA-06-2569-01 11 124747411 124747411 T C ROBO3 Intron 0.22 TCGA-06-2569-01 11 36596029 36596029 G T RAG1 Missense_Mutation p.G392V 0.43 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-06-2569-01 11 65271875 65271875 C T MALAT1 RNA 0.17 TCGA-06-2569-01 11 75316902 75316902 C T MAP6 Missense_Mutation p.D423N 0.43 tolerated(0.09) benign(0.001) TCGA-06-2569-01 12 44166106 44166106 G T IRAK4 Missense_Mutation p.S144I 0.26 tolerated(0.22) benign(0.001) TCGA-06-2569-01 12 7882275 7882280 AACGGA - CLEC4C In_Frame_Del p.F185_R186del 0.08 TCGA-06-2569-01 13 52234797 52234797 C G WDFY2 Missense_Mutation p.P68R 0.13 deleterious(0) benign(0.231) TCGA-06-2569-01 14 95560476 95560476 C G DICER1 Missense_Mutation p.E1705Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-06-2569-01 14 95571502 95571519 AAAGTATGCTGGGGAGAC - DICER1 In_Frame_Del p.C1053_L1058del 0.28 TCGA-06-2569-01 16 31422097 31422097 C A ITGAD Missense_Mutation p.N418K 0.87 deleterious(0.05) benign(0.001) TCGA-06-2569-01 17 263346 263346 G A C17orf97 Missense_Mutation p.D238N 0.09 tolerated_low_confidence(0.16) benign(0.001) TCGA-06-2569-01 17 29631684 29631684 C G EVI2B Missense_Mutation p.G315A 0.44 tolerated(0.06) probably_damaging(0.959) TCGA-06-2569-01 17 29653042 29653043 - A NF1 Frame_Shift_Ins p.N1681Kfs*3 0.83 TCGA-06-2569-01 17 34073121 34073121 G A GAS2L2 Silent p.A465A 0.38 TCGA-06-2569-01 17 35444255 35444255 G A ACACA Missense_Mutation p.T2383M 0.85 deleterious_low_confidence(0) possibly_damaging(0.618) TCGA-06-2569-01 17 72875610 72875610 G C FADS6 Missense_Mutation p.A277G 0.16 tolerated(0.16) benign(0.067) TCGA-06-2569-01 17 7578456 7578467 GCGGACGCGGGT - TP53 In_Frame_Del p.T155_R158del 0.89 TCGA-06-2569-01 19 51330190 51330190 C A KLK15 Missense_Mutation p.G142V 0.25 deleterious(0) probably_damaging(0.996) TCGA-06-2569-01 1 155150608 155150608 G A TRIM46 Missense_Mutation p.S347N 0.36 tolerated(0.39) benign(0.001) TCGA-06-2569-01 1 160063842 160063842 C T IGSF8 Missense_Mutation p.A188T 0.29 deleterious(0) probably_damaging(0.995) TCGA-06-2569-01 1 16946357 16946357 C T RP5-1182A14.5 3'Flank 0.25 TCGA-06-2569-01 1 228511139 228511139 G A OBSCN Missense_Mutation p.D6119N 0.08 probably_damaging(0.999) TCGA-06-2569-01 1 228511261 228511261 G A OBSCN Silent p.E6159E 0.08 TCGA-06-2569-01 1 54060499 54060499 A G GLIS1 Missense_Mutation p.L26P 0.31 deleterious_low_confidence(0) benign(0.005) TCGA-06-2569-01 20 23065723 23065723 G A CD93 Silent p.C369C 0.08 TCGA-06-2569-01 20 35944753 35944753 A G MANBAL Missense_Mutation p.K65E 0.25 tolerated(0.17) possibly_damaging(0.589) TCGA-06-2569-01 22 19263258 19263258 C A CLTCL1 Missense_Mutation p.E46D 0.07 tolerated(0.57) benign(0.016) TCGA-06-2569-01 2 176996300 176996301 AA - HOXD8 Frame_Shift_Del p.Q278Rfs*62 0.25 TCGA-06-2569-01 3 111766626 111766626 T G TMPRSS7 Silent p.S131S 0.86 TCGA-06-2569-01 4 47538903 47538903 G T ATP10D Missense_Mutation p.M448I 0.18 deleterious(0.02) possibly_damaging(0.708) TCGA-06-2569-01 4 666298 666298 T C ATP5I Missense_Mutation p.I67M 0.38 deleterious(0) benign(0.39) TCGA-06-2569-01 5 169031191 169031191 A G SPDL1 Missense_Mutation p.T600A 0.20 tolerated(0.06) possibly_damaging(0.448) TCGA-06-2569-01 6 70916651 70916651 G A COL19A1 Silent p.L1090L 0.04 TCGA-06-2569-01 7 142625890 142625890 G T TRPV5 Missense_Mutation p.L220M 0.06 tolerated(0.21) possibly_damaging(0.601) TCGA-06-2569-01 7 32909138 32909138 C T KBTBD2 Missense_Mutation p.R564Q 0.15 tolerated(0.58) benign(0.297) TCGA-06-2569-01 7 4153059 4153059 G T SDK1 Silent p.R1191R 0.05 TCGA-06-2569-01 7 73474491 73474491 A G ELN Missense_Mutation p.K533R 0.89 unknown(0) TCGA-06-2569-01 9 140074735 140074735 C A ANAPC2 Silent p.L596L 0.29 TCGA-06-2569-01 9 96030181 96030181 G T WNK2 Missense_Mutation p.G1284C 0.27 unknown(0) TCGA-06-2569-01 X 99663291 99663291 G A PCDH19 Missense_Mutation p.S102L 0.33 deleterious(0.04) probably_damaging(1) TCGA-06-2570-01 11 45945056 45945056 T C GYLTL1B Silent p.H106H 0.70 TCGA-06-2570-01 11 46568697 46568697 C A AMBRA1 Missense_Mutation p.C115F 0.78 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-2570-01 11 62416142 62416142 C A INTS5 Missense_Mutation p.L470F 0.74 tolerated(0.32) benign(0.053) TCGA-06-2570-01 11 64064379 64064379 G A KCNK4 Silent p.A73A 0.34 TCGA-06-2570-01 12 66597538 66597538 T C IRAK3 Missense_Mutation p.Y61H 0.52 tolerated(0.19) benign(0.134) TCGA-06-2570-01 13 99127230 99127230 C T STK24 Missense_Mutation p.A160T 0.07 deleterious(0) probably_damaging(0.96) TCGA-06-2570-01 14 105396392 105396392 C T PLD4 Missense_Mutation p.R223W 0.36 deleterious(0) possibly_damaging(0.836) TCGA-06-2570-01 14 19566050 19566050 T C POTEG Missense_Mutation p.M365T 0.04 tolerated(0.11) benign(0.349) TCGA-06-2570-01 14 24838971 24838971 C T NFATC4 Missense_Mutation p.P186S 0.47 deleterious(0) probably_damaging(0.973) TCGA-06-2570-01 14 38723629 38723629 T G CLEC14A 3'UTR 0.32 TCGA-06-2570-01 14 75514227 75514227 G C MLH3 Missense_Mutation p.S711C 0.46 deleterious(0.02) possibly_damaging(0.497) TCGA-06-2570-01 17 33520927 33520927 G A SLC35G3 Missense_Mutation p.R134C 0.42 tolerated(0.07) benign(0.01) TCGA-06-2570-01 17 48626428 48626428 C T SPATA20 Missense_Mutation p.P181S 0.05 deleterious(0) probably_damaging(0.99) TCGA-06-2570-01 17 7578524 7578524 G C TP53 Missense_Mutation p.Q136E 0.87 deleterious(0) probably_damaging(0.997) TCGA-06-2570-01 19 10473108 10473108 G A TYK2 Missense_Mutation p.R501W 0.12 deleterious(0) possibly_damaging(0.462) TCGA-06-2570-01 19 35612162 35612162 G A FXYD3 Intron 0.45 TCGA-06-2570-01 1 152278655 152278655 C T FLG Missense_Mutation p.D2903N 0.21 benign(0.095) TCGA-06-2570-01 1 248059605 248059605 C T OR2W3 Silent p.G239G 0.43 TCGA-06-2570-01 1 67313167 67313167 C T WDR78 Missense_Mutation p.E431K 0.11 deleterious(0.01) benign(0.033) TCGA-06-2570-01 20 60504710 60504710 C T CDH4 Silent p.A683A 0.09 TCGA-06-2570-01 21 45987844 45987844 C A TSPEAR Missense_Mutation p.G43V 0.07 tolerated(0.11) benign(0.219) TCGA-06-2570-01 21 45987845 45987845 C G TSPEAR Missense_Mutation p.G43R 0.06 tolerated(0.25) benign(0.02) TCGA-06-2570-01 21 46074201 46074201 C T KRTAP12-4 Missense_Mutation p.G111S 0.44 deleterious(0.04) benign(0.009) TCGA-06-2570-01 2 107460277 107460277 G A ST6GAL2 Missense_Mutation p.P53S 0.07 possibly_damaging(0.695) TCGA-06-2570-01 2 152322631 152322631 T C RIF1 Silent p.N2199N 0.41 TCGA-06-2570-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-06-2570-01 2 218940356 218940356 G A RUFY4 Missense_Mutation p.A401T 0.42 tolerated(0.15) benign(0.001) TCGA-06-2570-01 2 233392979 233392979 C A CHRND Missense_Mutation p.T84K 0.48 tolerated(0.31) benign(0.052) TCGA-06-2570-01 2 242423744 242423744 C T FARP2 Silent p.L807L 0.04 TCGA-06-2570-01 2 99438353 99438353 T C KIAA1211L Missense_Mutation p.T795A 0.37 tolerated(0.82) benign(0.043) TCGA-06-2570-01 3 178936083 178936083 A T PIK3CA Missense_Mutation p.E542V 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-06-2570-01 3 189681756 189681756 A G LEPREL1 Silent p.Y675Y 0.49 TCGA-06-2570-01 3 46307517 46307517 G A CCR3 Missense_Mutation p.A311T 0.04 deleterious(0.04) benign(0.343) TCGA-06-2570-01 3 52417902 52417902 G A DNAH1 Missense_Mutation p.R2726H 0.13 possibly_damaging(0.874) TCGA-06-2570-01 5 56177898 56177898 A G MAP3K1 Silent p.Q957Q 0.45 TCGA-06-2570-01 5 60053463 60053463 C T ELOVL7 Missense_Mutation p.G170E 0.43 deleterious(0) probably_damaging(1) TCGA-06-2570-01 7 87069034 87069034 C T ABCB4 Silent p.T560T 0.42 TCGA-06-2570-01 7 87133728 87133728 C T ABCB1 Missense_Mutation p.R1225H 0.04 deleterious(0.01) probably_damaging(0.99) TCGA-06-2570-01 8 133584685 133584685 A T LRRC6 Missense_Mutation p.S424T 0.10 tolerated(0.15) benign(0.027) TCGA-06-2570-01 8 134258899 134258899 C T NDRG1 Missense_Mutation p.C272Y 0.47 deleterious(0.03) probably_damaging(0.997) TCGA-06-2570-01 9 85615141 85615141 T C RASEF Missense_Mutation p.S556G 0.45 deleterious(0) probably_damaging(0.997) TCGA-06-2570-01 X 18597977 18597977 G A CDKL5 Missense_Mutation p.E98K 0.66 deleterious_low_confidence(0) possibly_damaging(0.881) TCGA-06-2570-01 X 47775519 47775519 C A ZNF81 Missense_Mutation p.H492N 0.17 deleterious(0) probably_damaging(0.997) TCGA-06-2570-01 X 76909633 76909636 TTTC - ATRX Frame_Shift_Del p.K1424Gfs*65 0.83 TCGA-06-5408-01 10 127462500 127462500 C T MMP21 Silent p.A199A 0.90 TCGA-06-5408-01 10 75051125 75051125 G A TTC18 Missense_Mutation p.R770W 0.69 deleterious(0.02) benign(0) TCGA-06-5408-01 11 36614338 36614338 G T RAG2 Missense_Mutation p.L461M 0.37 deleterious(0) probably_damaging(0.998) TCGA-06-5408-01 11 44105037 44105037 G A ACCS Missense_Mutation p.V440M 0.46 deleterious(0.01) probably_damaging(0.995) TCGA-06-5408-01 11 55594870 55594870 T A OR5L2 Missense_Mutation p.V59E 0.46 deleterious(0) benign(0.058) TCGA-06-5408-01 11 6261559 6261559 G A CNGA4 Missense_Mutation p.V179I 0.38 tolerated(1) benign(0.387) TCGA-06-5408-01 11 63174115 63174115 G A SLC22A9 Missense_Mutation p.R407Q 0.43 deleterious(0.05) possibly_damaging(0.867) TCGA-06-5408-01 12 100536432 100536432 G T UHRF1BP1L 5'UTR 0.29 TCGA-06-5408-01 12 10772903 10772903 C T STYK1 Missense_Mutation p.R370H 0.35 deleterious(0) probably_damaging(1) TCGA-06-5408-01 12 113447011 113447011 G T OAS2 Missense_Mutation p.G672V 0.07 tolerated(0.39) possibly_damaging(0.704) TCGA-06-5408-01 12 64202634 64202634 C T TMEM5 Missense_Mutation p.T365I 0.41 tolerated(0.06) benign(0.019) TCGA-06-5408-01 13 39422735 39422735 C T FREM2 Missense_Mutation p.R2103C 0.47 deleterious(0.03) probably_damaging(0.916) TCGA-06-5408-01 13 48669208 48669208 C T MED4 Missense_Mutation p.A3T 0.30 tolerated_low_confidence(0.25) unknown(0) TCGA-06-5408-01 13 95715015 95715015 G C ABCC4 Missense_Mutation p.I1103M 0.04 deleterious(0.01) benign(0.314) TCGA-06-5408-01 14 105417146 105417146 C T AHNAK2 Missense_Mutation p.A1548T 0.07 possibly_damaging(0.665) TCGA-06-5408-01 14 60212584 60212584 G A RTN1 Missense_Mutation p.T286M 0.15 deleterious(0) probably_damaging(0.99) TCGA-06-5408-01 15 25966826 25966827 - AC ATP10A Frame_Shift_Ins p.E448* 0.39 TCGA-06-5408-01 15 74635350 74635350 C T CYP11A1 Missense_Mutation p.V320I 0.46 tolerated(1) benign(0.014) TCGA-06-5408-01 16 4743855 4743855 G A NUDT16L1 Missense_Mutation p.R43H 0.15 deleterious(0.04) benign(0.15) TCGA-06-5408-01 16 55525753 55525753 C T MMP2 Silent p.H407H 0.13 TCGA-06-5408-01 16 703407 703407 G A WDR90 Missense_Mutation p.V397M 0.42 deleterious(0) possibly_damaging(0.721) TCGA-06-5408-01 17 29587504 29587504 G A NF1 Silent p.E1516E 0.08 TCGA-06-5408-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.17 tolerated(0.13) possibly_damaging(0.631) TCGA-06-5408-01 17 9822945 9822945 A G GAS7 Silent p.L406L 0.35 TCGA-06-5408-01 19 15791225 15791225 G A CYP4F12 Missense_Mutation p.G141S 0.35 deleterious(0) probably_damaging(0.943) TCGA-06-5408-01 19 44235655 44235655 G A SMG9 3'UTR 0.10 TCGA-06-5408-01 19 9088857 9088857 T A MUC16 Silent p.S986S 0.05 TCGA-06-5408-01 1 152325024 152325024 T C FLG2 Silent p.G1746G 0.05 TCGA-06-5408-01 1 169698774 169698774 G A SELE Silent p.F252F 0.45 TCGA-06-5408-01 1 33625475 33625475 C T TRIM62 Missense_Mutation p.R192H 0.35 deleterious(0) possibly_damaging(0.639) TCGA-06-5408-01 1 43779028 43779028 G A TIE1 Missense_Mutation p.R717H 0.03 deleterious(0) probably_damaging(0.999) TCGA-06-5408-01 1 75672231 75672231 T G SLC44A5 3'UTR 0.42 TCGA-06-5408-01 20 2636841 2636841 C A NOP56 Intron 0.06 TCGA-06-5408-01 22 32634986 32634986 A G SLC5A4 Missense_Mutation p.V190A 0.13 tolerated(0.07) benign(0.314) TCGA-06-5408-01 22 41257669 41257669 G T DNAJB7 Missense_Mutation p.H110Q 0.82 deleterious(0.04) benign(0.36) TCGA-06-5408-01 2 167760222 167760222 A G XIRP2 Missense_Mutation p.E77G 0.39 benign(0) TCGA-06-5408-01 2 202252532 202252532 G A TRAK2 Silent p.S530S 0.04 TCGA-06-5408-01 2 218999840 218999840 G A CXCR2 Missense_Mutation p.A106T 0.37 tolerated(0.26) benign(0.082) TCGA-06-5408-01 2 222290677 222290677 G A EPHA4 3'UTR 0.44 TCGA-06-5408-01 2 27459352 27459352 C T CAD Silent p.P1425P 0.44 TCGA-06-5408-01 2 37078198 37078198 C T STRN Silent p.P677P 0.05 TCGA-06-5408-01 3 138739096 138739096 G A PRR23B Silent p.V136V 0.50 TCGA-06-5408-01 3 38770174 38770174 G A SCN10A Silent p.H833H 0.45 TCGA-06-5408-01 3 46245393 46245393 C T CCR1 Missense_Mutation p.A138T 0.30 deleterious(0.01) benign(0.297) TCGA-06-5408-01 4 103947532 103947532 C G SLC9B2 Missense_Mutation p.V537L 0.04 tolerated_low_confidence(0.23) benign(0.004) TCGA-06-5408-01 4 62598628 62598628 A G LPHN3 Missense_Mutation p.E184G 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5408-01 4 680063 680063 G A MFSD7 Missense_Mutation p.A108V 0.39 tolerated(1) benign(0.01) TCGA-06-5408-01 5 147481379 147481379 C T SPINK5 Silent p.N446N 0.08 TCGA-06-5408-01 5 151125916 151125916 T C ATOX1 Silent p.G59G 0.10 TCGA-06-5408-01 5 40852866 40852866 G A CARD6 Missense_Mutation p.A478T 0.11 tolerated(0.25) benign(0.009) TCGA-06-5408-01 6 20118736 20118736 T C MBOAT1 Missense_Mutation p.S315G 0.54 tolerated(0.06) possibly_damaging(0.648) TCGA-06-5408-01 6 34008523 34008523 G A GRM4 Missense_Mutation p.R391C 0.08 deleterious(0.03) probably_damaging(0.912) TCGA-06-5408-01 6 43752359 43752359 A T VEGFA 3'Flank 0.38 TCGA-06-5408-01 6 7883333 7883333 A G TXNDC5 3'UTR 0.32 TCGA-06-5408-01 7 116960744 116960744 G A WNT2 Missense_Mutation p.R63C 0.25 tolerated(0.07) possibly_damaging(0.828) TCGA-06-5408-01 7 138978177 138978177 C T UBN2 Missense_Mutation p.T1290I 0.31 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-06-5408-01 7 142651272 142651272 T C KEL Missense_Mutation p.K308R 0.37 deleterious(0.02) benign(0.103) TCGA-06-5408-01 7 64864755 64864755 C A ZNF92 Silent p.S576S 0.51 TCGA-06-5408-01 7 91503564 91503564 A G MTERF Missense_Mutation p.F182L 0.44 deleterious(0.05) benign(0.095) TCGA-06-5408-01 7 92883220 92883220 C G CCDC132 Missense_Mutation p.D91E 0.21 tolerated(0.67) benign(0.05) TCGA-06-5408-01 8 56436491 56436491 G A XKR4 Missense_Mutation p.R553H 0.05 tolerated(0.06) possibly_damaging(0.572) TCGA-06-5408-01 8 75761494 75761494 C T PI15 3'UTR 0.49 TCGA-06-5408-01 8 95262754 95262754 C T GEM Silent p.Q225Q 0.10 TCGA-06-5408-01 X 131205232 131205232 G A MST4 Missense_Mutation p.E307K 0.51 tolerated(0.07) benign(0.066) TCGA-06-5410-01 11 103014114 103014114 C T DYNC2H1 Nonsense_Mutation p.R898* 0.13 TCGA-06-5410-01 11 55873242 55873242 G A OR8H2 Missense_Mutation p.V242I 0.08 deleterious(0) benign(0.003) TCGA-06-5410-01 11 58602091 58602091 G A GLYATL2 Silent p.Y232Y 0.10 TCGA-06-5410-01 12 12232401 12232401 C T BCL2L14 Silent p.S54S 0.09 TCGA-06-5410-01 12 47186905 47186905 A T SLC38A4 5'UTR 0.06 TCGA-06-5410-01 12 50575756 50575756 C T LIMA1 Missense_Mutation p.R403H 0.06 deleterious(0) probably_damaging(0.993) TCGA-06-5410-01 12 56330335 56330335 G A DGKA Silent p.L16L 0.08 TCGA-06-5410-01 13 39266205 39266205 T G FREM2 Missense_Mutation p.V1575G 0.08 deleterious(0.05) benign(0.007) TCGA-06-5410-01 14 21871325 21871325 G A CHD8 Nonsense_Mutation p.Q1189* 0.07 TCGA-06-5410-01 14 42360496 42360496 G C LRFN5 Missense_Mutation p.A477P 0.09 deleterious(0) probably_damaging(0.99) TCGA-06-5410-01 16 3339555 3339555 A G ZNF263 Missense_Mutation p.E350G 0.13 tolerated(0.07) benign(0.007) TCGA-06-5410-01 16 4016471 4016471 C T ADCY9 Missense_Mutation p.A1123T 0.05 tolerated(0.59) benign(0) TCGA-06-5410-01 17 29533304 29533304 C A NF1 Nonsense_Mutation p.S436* 0.09 TCGA-06-5410-01 17 54559950 54559950 T C ANKFN1 3'UTR 0.12 TCGA-06-5410-01 19 16034748 16034748 G A CYP4F11 Silent p.H264H 0.06 TCGA-06-5410-01 19 17329200 17329200 C T USE1 Missense_Mutation p.T141I 0.08 tolerated(0.3) benign(0.003) TCGA-06-5410-01 19 43382389 43382389 C T PSG1 Missense_Mutation p.V36I 0.04 deleterious(0.01) benign(0.171) TCGA-06-5410-01 1 169772375 169772375 C T C1orf112 Silent p.S79S 0.09 TCGA-06-5410-01 22 32937634 32937634 G A SYN3 Silent p.Y280Y 0.12 TCGA-06-5410-01 2 160755280 160755280 G A LY75-CD302 Missense_Mutation p.H129Y 0.08 tolerated(1) possibly_damaging(0.888) TCGA-06-5410-01 3 164786544 164786544 G T SI Missense_Mutation p.T150N 0.04 deleterious(0.03) benign(0.306) TCGA-06-5410-01 5 143853547 143853547 A C KCTD16 Missense_Mutation p.K386T 0.10 tolerated(0.54) probably_damaging(0.994) TCGA-06-5410-01 5 41048449 41048449 G A MROH2B Missense_Mutation p.P554L 0.05 deleterious(0.03) probably_damaging(0.938) TCGA-06-5410-01 6 610155 610155 C A EXOC2 Missense_Mutation p.D229Y 0.07 deleterious(0.01) probably_damaging(0.99) TCGA-06-5410-01 7 86469103 86469103 C T GRM3 Missense_Mutation p.T758M 0.09 deleterious(0.02) possibly_damaging(0.85) TCGA-06-5410-01 7 99262902 99262902 C G CYP3A5 Missense_Mutation p.G186A 0.07 tolerated(0.16) benign(0.015) TCGA-06-5410-01 9 990484 990484 G A DMRT3 Missense_Mutation p.A300T 0.04 tolerated(0.14) benign(0.031) TCGA-06-5410-01 X 105011568 105011568 C T IL1RAPL2 Silent p.L659L 0.07 TCGA-06-5410-01 X 24073154 24073154 G A EIF2S3 Silent p.L23L 0.09 TCGA-06-5410-01 X 2407462 2407462 C T ZBED1 Silent p.T433T 0.05 TCGA-06-5410-01 X 48368320 48368320 G A PORCN Missense_Mutation p.A38T 0.07 tolerated(0.52) benign(0.004) TCGA-06-5410-01 X 54276526 54276526 G A WNK3 Nonsense_Mutation p.R872* 0.15 TCGA-06-5411-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.28 TCGA-06-5411-01 11 420528 420528 C T ANO9 Missense_Mutation p.R574H 0.25 tolerated(0.1) probably_damaging(0.976) TCGA-06-5411-01 11 59271634 59271634 G T OR4D11 Nonsense_Mutation p.E196* 0.21 TCGA-06-5411-01 12 11420518 11420518 G A PRB3 Intron 0.19 TCGA-06-5411-01 12 11420581 11420581 G A PRB3 Missense_Mutation p.P201L 0.10 tolerated(0.22) unknown(0) TCGA-06-5411-01 12 81101720 81101720 C T MYF6 Silent p.P74P 0.28 TCGA-06-5411-01 15 24921520 24921520 T C NPAP1 Missense_Mutation p.I169T 0.39 tolerated(0.6) benign(0.013) TCGA-06-5411-01 17 8076720 8076720 T C TMEM107 3'Flank 0.24 TCGA-06-5411-01 18 28992962 28992962 C T DSG4 Missense_Mutation p.L862F 0.30 deleterious(0) probably_damaging(1) TCGA-06-5411-01 18 57014768 57014768 A G LMAN1 Silent p.L267L 0.24 TCGA-06-5411-01 19 45016954 45016954 C T CEACAM20 RNA 0.21 TCGA-06-5411-01 19 58858802 58858802 C T A1BG Missense_Mutation p.G466D 0.41 deleterious(0) probably_damaging(0.997) TCGA-06-5411-01 1 11087589 11087589 G A MASP2 Missense_Mutation p.L472F 0.43 deleterious(0) probably_damaging(1) TCGA-06-5411-01 1 247695277 247695277 A G OR2C3 Silent p.F179F 0.39 TCGA-06-5411-01 20 16337022 16337022 C T KIF16B Missense_Mutation p.V1192I 0.13 tolerated(0.13) benign(0.072) TCGA-06-5411-01 20 30156055 30156055 C T HM13 Intron 0.26 TCGA-06-5411-01 20 56137841 56137841 G A PCK1 Missense_Mutation p.V166M 0.29 deleterious(0) probably_damaging(0.996) TCGA-06-5411-01 21 16340303 16340303 G A NRIP1 Missense_Mutation p.H71Y 0.28 tolerated(1) benign(0.175) TCGA-06-5411-01 21 37445093 37445093 G T CBR1 Missense_Mutation p.E249D 0.26 tolerated(0.3) benign(0.037) TCGA-06-5411-01 21 45953585 45953585 G A TSPEAR Silent p.C175C 0.06 TCGA-06-5411-01 2 196689149 196689149 C T DNAH7 Missense_Mutation p.E3041K 0.12 deleterious(0) probably_damaging(0.994) TCGA-06-5411-01 2 204260428 204260428 C T ABI2 Nonsense_Mutation p.R253* 0.32 TCGA-06-5411-01 2 46808672 46808672 A G PIGF Missense_Mutation p.I202T 0.31 tolerated(0.12) benign(0.018) TCGA-06-5411-01 2 75720689 75720689 G A EVA1A Silent p.I44I 0.26 TCGA-06-5411-01 2 90078155 90078155 G A IGKV3D-20 Silent p.A64A 0.29 TCGA-06-5411-01 4 55597497 55597497 C T KIT Silent p.S715S 0.17 TCGA-06-5411-01 4 57389924 57389924 G A ARL9 Missense_Mutation p.G85E 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5411-01 4 71346617 71346617 A G MUC7 Silent p.L52L 0.24 TCGA-06-5411-01 5 161119124 161119124 C T GABRA6 Missense_Mutation p.A335V 0.31 tolerated(0.24) benign(0.006) TCGA-06-5411-01 5 170736674 170736674 C T TLX3 Missense_Mutation p.P102L 0.29 deleterious(0.03) benign(0.285) TCGA-06-5411-01 5 40853218 40853218 T A CARD6 Missense_Mutation p.I595N 0.28 deleterious(0.05) benign(0.024) TCGA-06-5411-01 5 73045681 73045681 C T ARHGEF28 Missense_Mutation p.A18V 0.25 tolerated(0.06) probably_damaging(0.964) TCGA-06-5411-01 7 142749846 142749846 G T OR6V1 Missense_Mutation p.A137S 0.25 tolerated(0.79) benign(0.033) TCGA-06-5411-01 7 21784532 21784532 C T DNAH11 Silent p.C2794C 0.19 TCGA-06-5411-01 7 5983072 5983072 G C RSPH10B Silent p.L547L 0.09 TCGA-06-5411-01 7 99917657 99917657 A G SPDYE3 Intron 0.20 TCGA-06-5411-01 8 16001076 16001076 T C MSR1 Missense_Mutation p.N342D 0.16 tolerated(0.18) benign(0.045) TCGA-06-5411-01 8 23225588 23225588 C A LOXL2 Missense_Mutation p.A93S 0.05 deleterious(0) probably_damaging(0.996) TCGA-06-5411-01 8 30695499 30695499 C T TEX15 Silent p.T2384T 0.22 TCGA-06-5411-01 8 37697018 37697018 T C GPR124 Missense_Mutation p.S797P 0.31 deleterious(0.03) probably_damaging(0.932) TCGA-06-5411-01 9 124751932 124751932 C T TTLL11 Missense_Mutation p.A361T 0.29 tolerated(0.62) benign(0.005) TCGA-06-5411-01 9 124794081 124794081 T A TTLL11 Missense_Mutation p.Q295L 0.31 tolerated(0.16) possibly_damaging(0.84) TCGA-06-5412-01 10 38407513 38407513 G T ZNF37A Missense_Mutation p.Q478H 0.12 tolerated(0.19) probably_damaging(0.99) TCGA-06-5412-01 10 89720831 89720831 G - PTEN Frame_Shift_Del p.A328Qfs*16 0.17 TCGA-06-5412-01 11 123485469 123485469 G A GRAMD1B Silent p.R605R 0.06 TCGA-06-5412-01 11 76371805 76371805 G A LRRC32 Missense_Mutation p.R278W 0.12 deleterious(0) possibly_damaging(0.586) TCGA-06-5412-01 12 112926909 112926909 A T PTPN11 Missense_Mutation p.Q510L 0.10 deleterious(0) possibly_damaging(0.827) TCGA-06-5412-01 12 31236988 31236988 G T DDX11 Missense_Mutation p.R129L 0.09 deleterious(0.01) possibly_damaging(0.828) TCGA-06-5412-01 13 60686198 60686198 G T DIAPH3 Missense_Mutation p.N112K 0.15 tolerated(0.07) benign(0.297) TCGA-06-5412-01 14 71205013 71205013 G A MAP3K9 Missense_Mutation p.T598M 0.13 deleterious(0) probably_damaging(0.999) TCGA-06-5412-01 14 77930956 77930956 T A AHSA1 Missense_Mutation p.M163K 0.12 deleterious(0) possibly_damaging(0.859) TCGA-06-5412-01 14 77930997 77930997 G A AHSA1 Missense_Mutation p.G177R 0.09 tolerated(0.46) benign(0.001) TCGA-06-5412-01 14 91372576 91372576 G A RPS6KA5 Missense_Mutation p.R292C 0.18 tolerated(0.08) benign(0.095) TCGA-06-5412-01 15 72432087 72432090 CAGT - SENP8 Frame_Shift_Del p.Q43Ffs*45 0.12 TCGA-06-5412-01 16 50733737 50733737 C G NOD2 Missense_Mutation p.R138G 0.07 deleterious(0) probably_damaging(0.987) TCGA-06-5412-01 16 57688009 57688009 C T GPR56 Silent p.A244A 0.11 TCGA-06-5412-01 16 726867 726867 G A RHBDL1 Missense_Mutation p.V198M 0.07 tolerated(0.18) possibly_damaging(0.721) TCGA-06-5412-01 17 29652976 29652979 TCTC - NF1 Frame_Shift_Del p.K1661Gfs*36 0.20 TCGA-06-5412-01 17 39637191 39637191 T A KRT35 Silent p.S53S 0.16 TCGA-06-5412-01 17 6939627 6939627 G A SLC16A13 5'UTR 0.12 TCGA-06-5412-01 18 21120489 21120489 C T NPC1 Missense_Mutation p.V843M 0.11 deleterious(0.04) benign(0.141) TCGA-06-5412-01 18 29487454 29487454 T G TRAPPC8 Missense_Mutation p.D453A 0.14 deleterious(0) probably_damaging(0.929) TCGA-06-5412-01 18 9570482 9570482 G A PPP4R1 Nonsense_Mutation p.Q416* 0.21 TCGA-06-5412-01 19 4164609 4164609 C T CREB3L3 Missense_Mutation p.T229I 0.06 deleterious(0) possibly_damaging(0.708) TCGA-06-5412-01 1 10713867 10713867 C T CASZ1 Silent p.A749A 0.10 TCGA-06-5412-01 1 145532131 145532131 C T ITGA10 Nonsense_Mutation p.Q259* 0.14 TCGA-06-5412-01 1 153923904 153923904 G A CRTC2 Silent p.G412G 0.19 TCGA-06-5412-01 1 17690064 17690064 C T PADI4 Silent p.F602F 0.19 TCGA-06-5412-01 1 228362896 228362896 C T IBA57 Silent p.N251N 0.06 TCGA-06-5412-01 1 247464120 247464120 C T ZNF496 Missense_Mutation p.D489N 0.06 deleterious(0.02) benign(0.118) TCGA-06-5412-01 1 248685052 248685052 C T OR2G6 Silent p.Y35Y 0.13 TCGA-06-5412-01 1 54059816 54059816 G A GLIS1 Nonsense_Mutation p.R254* 0.15 TCGA-06-5412-01 1 62228837 62228837 C - INADL Frame_Shift_Del p.Q59Nfs*2 0.09 TCGA-06-5412-01 20 2633552 2633552 A T NOP56 Missense_Mutation p.E23V 0.15 deleterious(0) possibly_damaging(0.756) TCGA-06-5412-01 20 45315631 45315631 C A TP53RK Nonsense_Mutation p.E175* 0.13 TCGA-06-5412-01 21 33074598 33074598 C T SCAF4 Missense_Mutation p.S139N 0.08 benign(0.303) TCGA-06-5412-01 2 116593818 116593818 A T DPP10 Missense_Mutation p.D683V 0.25 deleterious(0) probably_damaging(0.998) TCGA-06-5412-01 2 176981726 176981726 G A HOXD10 Silent p.P55P 0.07 TCGA-06-5412-01 2 208841462 208841462 G A PLEKHM3 Missense_Mutation p.R487C 0.14 deleterious(0) probably_damaging(0.994) TCGA-06-5412-01 2 219874081 219874081 G C CCDC108 Missense_Mutation p.D1518E 0.05 tolerated(0.06) benign(0.422) TCGA-06-5412-01 2 238738022 238738022 G A RBM44 Silent p.S922S 0.21 TCGA-06-5412-01 3 12858462 12858462 C T CAND2 Silent p.D677D 0.11 TCGA-06-5412-01 3 147113783 147113783 C G ZIC4 Missense_Mutation p.G232R 0.12 deleterious(0.04) probably_damaging(0.94) TCGA-06-5412-01 3 168834185 168834185 G A MECOM Missense_Mutation p.P369L 0.17 deleterious(0) probably_damaging(1) TCGA-06-5412-01 3 174951839 174951839 G A NAALADL2 Missense_Mutation p.D222N 0.12 tolerated(0.38) benign(0.001) TCGA-06-5412-01 4 111539460 111539460 T C PITX2 Missense_Mutation p.T266A 0.14 tolerated(0.5) benign(0.352) TCGA-06-5412-01 4 68606377 68606377 C T GNRHR Missense_Mutation p.V270I 0.15 tolerated(1) benign(0.129) TCGA-06-5412-01 5 140730012 140730012 G A PCDHGB1 Missense_Mutation p.R62Q 0.10 deleterious(0.02) benign(0.272) TCGA-06-5412-01 5 153432941 153432941 G A MFAP3 Missense_Mutation p.E253K 0.08 deleterious(0) probably_damaging(0.91) TCGA-06-5412-01 5 158140123 158140123 G A EBF1 Silent p.A408A 0.19 TCGA-06-5412-01 5 180432547 180432547 G A BTNL3 Missense_Mutation p.R359Q 0.13 tolerated(0.38) benign(0.042) TCGA-06-5412-01 6 117679033 117679033 G T ROS1 Missense_Mutation p.P1263H 0.19 deleterious(0.02) possibly_damaging(0.702) TCGA-06-5412-01 7 105660961 105660961 C T CDHR3 Missense_Mutation p.P599L 0.10 deleterious(0) probably_damaging(1) TCGA-06-5412-01 7 127334947 127334948 - A SND1 Frame_Shift_Ins p.I99Nfs*44 0.08 TCGA-06-5412-01 7 142643377 142643377 C T KEL Missense_Mutation p.V411M 0.12 deleterious(0.03) possibly_damaging(0.719) TCGA-06-5412-01 7 144077227 144077227 A T ARHGEF5 3'UTR 0.14 TCGA-06-5412-01 7 30693212 30693212 C T CRHR2 Missense_Mutation p.R394H 0.11 deleterious(0) probably_damaging(0.979) TCGA-06-5412-01 7 44611162 44611162 C A DDX56 Silent p.R273R 0.10 TCGA-06-5412-01 7 74212399 74212399 C T GTF2IRD2 Silent p.E484E 0.13 TCGA-06-5412-01 7 75442664 75442664 G C CCL24 Missense_Mutation p.Q51E 0.09 deleterious(0.01) probably_damaging(0.966) TCGA-06-5412-01 8 10583649 10583649 G A SOX7 Missense_Mutation p.P308S 0.10 tolerated(0.18) benign(0.113) TCGA-06-5412-01 8 120628516 120628516 C T ENPP2 Missense_Mutation p.G256R 0.12 tolerated(0.05) probably_damaging(0.997) TCGA-06-5412-01 8 122626452 122626452 T C HAS2 Missense_Mutation p.Y519C 0.12 deleterious(0) probably_damaging(0.99) TCGA-06-5412-01 8 130866513 130866513 G A FAM49B Missense_Mutation p.P172L 0.17 tolerated(0.26) benign(0.105) TCGA-06-5412-01 8 43048945 43048945 G C HGSNAT Missense_Mutation p.G475R 0.06 deleterious(0) probably_damaging(0.997) TCGA-06-5412-01 9 137300840 137300840 C T RXRA Missense_Mutation p.T162M 0.10 deleterious(0) probably_damaging(1) TCGA-06-5412-01 X 119070712 119070712 A T NKAP Intron 0.15 TCGA-06-5412-01 X 135291466 135291466 C T FHL1 Silent p.H251H 0.06 TCGA-06-5412-01 X 144905002 144905002 T C SLITRK2 Silent p.N353N 0.15 TCGA-06-5412-01 X 153689599 153689599 C A PLXNA3 Missense_Mutation p.T252K 0.11 deleterious(0.02) benign(0.187) TCGA-06-5412-01 X 41075424 41075424 G A USP9X Silent p.V1868V 0.08 TCGA-06-5412-01 X 69902635 69902635 G A TEX11 Missense_Mutation p.R364C 0.20 deleterious(0) probably_damaging(0.91) TCGA-06-5412-01 X 8433593 8433593 G C VCX3B Missense_Mutation p.K34N 0.07 tolerated_low_confidence(0.15) unknown(0) TCGA-06-5413-01 10 17949554 17949554 G A MRC1L1 Silent p.T1306T 0.60 TCGA-06-5413-01 10 69407205 69407205 C T CTNNA3 Missense_Mutation p.V23M 0.48 deleterious(0) possibly_damaging(0.867) TCGA-06-5413-01 11 134182345 134182345 G A GLB1L3 Missense_Mutation p.G464R 0.26 deleterious(0.01) benign(0.131) TCGA-06-5413-01 11 43411222 43411222 A C TTC17 Missense_Mutation p.K90N 0.36 tolerated(0.14) probably_damaging(0.996) TCGA-06-5413-01 11 59282555 59282555 C T OR4D9 Missense_Mutation p.T57M 0.32 deleterious(0.02) benign(0.133) TCGA-06-5413-01 12 10466085 10466085 A T KLRD1 Missense_Mutation p.E131V 0.38 deleterious(0) possibly_damaging(0.892) TCGA-06-5413-01 12 109876365 109876365 G A MYO1H Missense_Mutation p.R729H 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-06-5413-01 14 20848171 20848171 A G TEP1 Missense_Mutation p.V1682A 0.25 deleterious(0.02) benign(0.025) TCGA-06-5413-01 14 21860822 21860832 AGGAGTCAATG - CHD8 Frame_Shift_Del p.S2202Wfs*5 0.35 TCGA-06-5413-01 14 67940502 67940502 C T TMEM229B Missense_Mutation p.V47M 0.05 tolerated(0.07) probably_damaging(0.968) TCGA-06-5413-01 16 1537571 1537571 C T PTX4 Missense_Mutation p.G176D 0.44 tolerated(0.14) benign(0.022) TCGA-06-5413-01 16 24104126 24104126 A T PRKCB Missense_Mutation p.N182Y 0.24 deleterious(0) probably_damaging(0.986) TCGA-06-5413-01 16 28992797 28992797 C A SPNS1 Missense_Mutation p.P224T 0.20 deleterious(0.02) probably_damaging(0.967) TCGA-06-5413-01 16 30970183 30970183 G A SETD1A Missense_Mutation p.G44E 0.27 probably_damaging(0.999) TCGA-06-5413-01 16 3293075 3293075 G A MEFV 3'UTR 0.25 TCGA-06-5413-01 17 38027064 38027064 C T ZPBP2 Missense_Mutation p.T79M 0.32 tolerated(0.29) benign(0.052) TCGA-06-5413-01 17 55189944 55189944 T A AKAP1 Missense_Mutation p.S690T 0.45 tolerated(0.37) benign(0.213) TCGA-06-5413-01 17 56352985 56352985 G C MPO Missense_Mutation p.T428R 0.32 tolerated(1) benign(0.022) TCGA-06-5413-01 17 8076756 8076756 G C TMEM107 3'Flank 0.27 TCGA-06-5413-01 18 14478954 14478954 T C CXADRP3 RNA 0.22 TCGA-06-5413-01 19 33696170 33696170 C G LRP3 Missense_Mutation p.S165C 0.36 deleterious(0.05) possibly_damaging(0.866) TCGA-06-5413-01 19 55420766 55420766 C T NCR1 Missense_Mutation p.A173V 0.34 tolerated(0.08) possibly_damaging(0.81) TCGA-06-5413-01 1 162368789 162368789 T C SH2D1B Missense_Mutation p.H96R 0.41 tolerated(0.22) benign(0.003) TCGA-06-5413-01 1 21268743 21268743 G C EIF4G3 Missense_Mutation p.Q252E 0.35 tolerated_low_confidence(0.41) benign(0.066) TCGA-06-5413-01 1 237947200 237947200 C T RYR2 Missense_Mutation p.T4063M 0.29 possibly_damaging(0.787) TCGA-06-5413-01 1 93298955 93298955 A - RPL5 Frame_Shift_Del p.V6Lfs*13 0.29 TCGA-06-5413-01 20 30136902 30136902 G T HM13 Missense_Mutation p.W175C 0.29 deleterious(0) benign(0.333) TCGA-06-5413-01 21 33296873 33296873 C T HUNK Missense_Mutation p.R119C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5413-01 22 17119509 17119509 G A TPTEP1 RNA 0.46 TCGA-06-5413-01 22 21344765 21344765 G A LZTR1 Missense_Mutation p.G248R 0.63 deleterious(0) probably_damaging(1) TCGA-06-5413-01 22 32198714 32198715 - C DEPDC5 Frame_Shift_Ins p.N325Qfs*3 0.39 TCGA-06-5413-01 2 131520873 131520873 G A AMER3 Missense_Mutation p.A410T 0.35 tolerated(0.12) probably_damaging(0.93) TCGA-06-5413-01 2 165997260 165997260 T C SCN3A Silent p.A640A 0.38 TCGA-06-5413-01 2 179647077 179647077 G A TTN Missense_Mutation p.A1081V 0.40 TCGA-06-5413-01 2 198570303 198570303 G A MARS2 Silent p.P58P 0.06 TCGA-06-5413-01 2 21228712 21228712 G A APOB Silent p.I3676I 0.31 TCGA-06-5413-01 2 242202197 242202197 T C HDLBP Missense_Mutation p.I127V 0.37 tolerated(0.45) benign(0.07) TCGA-06-5413-01 3 121828238 121828238 G A CD86 Missense_Mutation p.R277H 0.27 tolerated(0.26) benign(0.049) TCGA-06-5413-01 3 178916728 178916728 G A PIK3CA Missense_Mutation p.E39K 0.39 deleterious(0.01) possibly_damaging(0.562) TCGA-06-5413-01 3 45800488 45800488 G A SLC6A20 Silent p.D587D 0.29 TCGA-06-5413-01 3 52525480 52525480 G A NISCH Silent p.P1285P 0.47 TCGA-06-5413-01 3 57132318 57132318 C T IL17RD Silent p.A471A 0.33 TCGA-06-5413-01 4 123665161 123665161 C T BBS12 Missense_Mutation p.T705M 0.26 deleterious(0.02) benign(0.121) TCGA-06-5413-01 4 128807278 128807278 A T PLK4 Silent p.A251A 0.31 TCGA-06-5413-01 4 76797822 76797822 A G PPEF2 Missense_Mutation p.V313A 0.38 tolerated(0.32) benign(0.438) TCGA-06-5413-01 4 87028499 87028499 C T MAPK10 Silent p.A81A 0.17 TCGA-06-5413-01 5 131396547 131396547 C T IL3 Missense_Mutation p.P50S 0.37 deleterious(0) possibly_damaging(0.502) TCGA-06-5413-01 5 140242661 140242661 G A AC005609.1 Silent p.P105P 0.19 TCGA-06-5413-01 5 150947262 150947262 G A FAT2 Nonsense_Mutation p.R411* 0.30 TCGA-06-5413-01 5 33549384 33549384 G A ADAMTS12 Silent p.G1410G 0.24 TCGA-06-5413-01 6 167704889 167704889 C A UNC93A 5'UTR 0.60 TCGA-06-5413-01 6 36185728 36185728 C T BRPF3 Silent p.S1008S 0.29 TCGA-06-5413-01 6 63990385 63990385 G A LGSN Silent p.C357C 0.54 TCGA-06-5413-01 7 100771685 100771685 C G SERPINE1 Missense_Mutation p.S4C 0.27 deleterious(0.03) benign(0.033) TCGA-06-5413-01 7 144015519 144015519 T G OR2A1 Missense_Mutation p.F101C 0.09 deleterious(0) possibly_damaging(0.832) TCGA-06-5413-01 7 149493793 149493793 G A SSPO RNA 0.24 TCGA-06-5413-01 7 157046788 157046788 T C UBE3C Silent p.N945N 0.23 TCGA-06-5413-01 7 30915152 30915152 G A FAM188B Missense_Mutation p.V618I 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5413-01 7 6476110 6476110 C A DAGLB Missense_Mutation p.R101L 0.25 deleterious(0) probably_damaging(0.998) TCGA-06-5413-01 9 79118132 79118132 G T GCNT1 Nonsense_Mutation p.E279* 0.37 TCGA-06-5413-01 9 87285564 87285565 AA - NTRK2 5'UTR 0.34 TCGA-06-5413-01 9 96097681 96097681 C A C9orf129 Missense_Mutation p.D114Y 0.26 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-06-5414-01 10 118969028 118969028 G A KCNK18 Missense_Mutation p.V125I 0.54 tolerated(0.17) benign(0.177) TCGA-06-5414-01 11 108350192 108350192 C T KDELC2 Missense_Mutation p.V377M 0.35 deleterious(0) probably_damaging(1) TCGA-06-5414-01 11 119229846 119229846 T - USP2 Splice_Site p.X354_splice 0.31 TCGA-06-5414-01 11 55406751 55406751 G T OR4P4 Silent p.L306L 0.33 TCGA-06-5414-01 11 56950136 56950136 C T LRRC55 Missense_Mutation p.R257W 0.29 deleterious(0.01) possibly_damaging(0.903) TCGA-06-5414-01 11 68206026 68206026 G A LRP5 Silent p.Q1408Q 0.23 TCGA-06-5414-01 11 6964441 6964441 G A ZNF215 Missense_Mutation p.R204H 0.30 tolerated(0.7) benign(0.002) TCGA-06-5414-01 11 7509544 7509544 C T OLFML1 Nonsense_Mutation p.R106* 0.35 TCGA-06-5414-01 13 60545255 60545255 G A DIAPH3 Missense_Mutation p.P564S 0.38 tolerated(0.34) benign(0.001) TCGA-06-5414-01 13 60545256 60545256 A T DIAPH3 Silent p.P563P 0.35 TCGA-06-5414-01 13 84455310 84455310 C A SLITRK1 Silent p.L111L 0.23 TCGA-06-5414-01 14 69920026 69920026 G A SLC39A9 Missense_Mutation p.A158T 0.32 deleterious(0) probably_damaging(0.994) TCGA-06-5414-01 15 57524624 57524624 G - TCF12 Frame_Shift_Del p.R274Pfs*2 0.17 TCGA-06-5414-01 16 71571778 71571778 C T CHST4 3'UTR 0.29 TCGA-06-5414-01 17 39659673 39659673 G A KRT13 Missense_Mutation p.R201C 0.43 deleterious(0.02) probably_damaging(0.996) TCGA-06-5414-01 19 10657548 10657548 C T ATG4D Missense_Mutation p.P176L 0.20 tolerated(0.14) benign(0.243) TCGA-06-5414-01 19 16883984 16883984 G A NWD1 Missense_Mutation p.A820T 0.24 tolerated(0.09) benign(0.011) TCGA-06-5414-01 19 42879827 42879827 G A MEGF8 Missense_Mutation p.V2413M 0.50 deleterious(0) probably_damaging(0.969) TCGA-06-5414-01 19 53668521 53668521 C T ZNF665 Missense_Mutation p.V408I 0.27 deleterious(0) benign(0.003) TCGA-06-5414-01 1 47278284 47278284 C T CYP4B1 Missense_Mutation p.R162C 0.09 tolerated(0.09) benign(0.01) TCGA-06-5414-01 20 30674471 30674471 G A HCK Missense_Mutation p.M292I 0.26 deleterious(0.01) possibly_damaging(0.827) TCGA-06-5414-01 22 46594404 46594404 G A PPARA Missense_Mutation p.G42S 0.31 tolerated_low_confidence(0.32) benign(0.003) TCGA-06-5414-01 2 158300464 158300464 C T CYTIP Silent p.A23A 0.34 TCGA-06-5414-01 2 201434569 201434569 A G SGOL2 Silent p.L219L 0.35 TCGA-06-5414-01 2 228884217 228884217 G A SPHKAP Silent p.V451V 0.33 TCGA-06-5414-01 3 109050752 109050752 C T DPPA4 Nonsense_Mutation p.W102* 0.39 TCGA-06-5414-01 3 172096080 172096080 G A FNDC3B Missense_Mutation p.G1010E 0.37 deleterious(0) probably_damaging(1) TCGA-06-5414-01 4 100268910 100268910 G A ADH1C Missense_Mutation p.R38C 0.05 benign(0.26) TCGA-06-5414-01 4 151791721 151791725 TTATG - LRBA Frame_Shift_Del p.H801Tfs*6 0.34 TCGA-06-5414-01 4 8621243 8621243 C T CPZ Missense_Mutation p.R620W 0.36 deleterious(0.03) benign(0.394) TCGA-06-5414-01 5 140741338 140741338 G A PCDHGB2 Missense_Mutation p.V546M 0.43 deleterious(0.02) possibly_damaging(0.805) TCGA-06-5414-01 5 156346519 156346519 G T TIMD4 Silent p.L362L 0.06 TCGA-06-5414-01 5 161116076 161116076 C A GABRA6 Missense_Mutation p.T116N 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5414-01 5 23527141 23527141 G C PRDM9 Missense_Mutation p.Q648H 0.30 tolerated(0.1) benign(0.169) TCGA-06-5414-01 5 5146447 5146447 C T ADAMTS16 Missense_Mutation p.T127M 0.38 tolerated(0.2) benign(0.298) TCGA-06-5414-01 5 5190212 5190212 T C ADAMTS16 Silent p.C392C 0.31 TCGA-06-5414-01 6 133078573 133078573 G A VNN2 Missense_Mutation p.P109L 0.42 deleterious(0.01) benign(0.349) TCGA-06-5414-01 6 44107303 44107303 C T TMEM63B Silent p.S169S 0.46 TCGA-06-5414-01 7 142658590 142658590 T C KEL Splice_Site p.X28_splice 0.18 TCGA-06-5414-01 7 158526847 158526847 C T ESYT2 3'UTR 0.07 TCGA-06-5414-01 7 99123821 99123821 G T ZKSCAN5 Silent p.R386R 0.05 TCGA-06-5414-01 8 15519787 15519787 T G TUSC3 Silent p.G230G 0.33 TCGA-06-5414-01 8 22020183 22020183 G A SFTPC Missense_Mutation p.V47I 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-06-5414-01 8 22079267 22079267 C G PHYHIP Missense_Mutation p.D198H 0.40 tolerated(0.24) probably_damaging(0.99) TCGA-06-5414-01 8 52733107 52733107 T C PCMTD1 Missense_Mutation p.N293S 0.04 tolerated(0.74) benign(0.146) TCGA-06-5414-01 8 73848231 73848231 C T KCNB2 Missense_Mutation p.T214M 0.40 deleterious(0) probably_damaging(0.997) TCGA-06-5414-01 X 21508621 21508621 G T CNKSR2 Silent p.S202S 0.06 TCGA-06-5415-01 10 98741746 98741746 G A C10orf12 Missense_Mutation p.C200Y 0.61 tolerated(0.15) probably_damaging(0.986) TCGA-06-5415-01 11 102647144 102647144 C T MMP10 Missense_Mutation p.A267T 0.45 tolerated(0.57) benign(0.001) TCGA-06-5415-01 11 125787056 125787056 C T DDX25 Silent p.Y316Y 0.50 TCGA-06-5415-01 11 77727605 77727605 C T KCTD14 3'UTR 0.48 TCGA-06-5415-01 12 104186945 104186945 C T NT5DC3 Missense_Mutation p.R339Q 0.27 tolerated(0.34) benign(0.313) TCGA-06-5415-01 12 117710315 117710315 C T NOS1 Missense_Mutation p.V572M 0.50 deleterious(0) probably_damaging(0.995) TCGA-06-5415-01 12 130015732 130015732 G A TMEM132D Silent p.G329G 0.67 TCGA-06-5415-01 12 50028946 50028946 G C PRPF40B Missense_Mutation p.E356Q 0.46 deleterious(0) probably_damaging(0.998) TCGA-06-5415-01 12 75692734 75692734 A C CAPS2 Missense_Mutation p.D308E 0.43 tolerated(0.06) benign(0.216) TCGA-06-5415-01 14 106237600 106237600 G A IGHG3 Silent p.S48S 0.32 TCGA-06-5415-01 14 94756360 94756360 C T SERPINA10 Missense_Mutation p.V191M 0.04 tolerated(0.07) probably_damaging(0.952) TCGA-06-5415-01 15 65489345 65489345 G T CILP Silent p.G1093G 0.37 TCGA-06-5415-01 15 91835641 91835641 C T SV2B Silent p.G637G 0.23 TCGA-06-5415-01 16 14024621 14024621 T A ERCC4 Missense_Mutation p.S283T 0.46 tolerated(0.49) benign(0.392) TCGA-06-5415-01 16 19126333 19126333 C G ITPRIPL2 Missense_Mutation p.P184A 0.16 deleterious(0.04) benign(0.046) TCGA-06-5415-01 16 67763893 67763893 G C RANBP10 Missense_Mutation p.R316G 0.43 deleterious(0.01) benign(0.299) TCGA-06-5415-01 17 46673615 46673615 C T HOXB6 3'UTR 0.30 TCGA-06-5415-01 17 7671485 7671485 C T DNAH2 Nonsense_Mutation p.R1281* 0.40 TCGA-06-5415-01 18 28913591 28913591 C T DSG1 Nonsense_Mutation p.R242* 0.35 TCGA-06-5415-01 19 22783086 22783086 C T AC011467.1 5'Flank 0.22 TCGA-06-5415-01 19 32847587 32847609 TAATGAGCCAAGAATTTCCAGTG - ZNF507 Frame_Shift_Del p.N732Yfs*3 0.13 TCGA-06-5415-01 19 46056784 46056784 C T OPA3 Intron 0.41 TCGA-06-5415-01 19 49143426 49143426 G C CA11 Missense_Mutation p.L133V 0.27 tolerated(0.29) benign(0.002) TCGA-06-5415-01 19 51919569 51919569 G A SIGLEC10 Missense_Mutation p.T250M 0.40 tolerated(0.13) benign(0.012) TCGA-06-5415-01 19 55175317 55175317 G A LILRB4 Missense_Mutation p.R59H 0.38 tolerated(0.17) benign(0.006) TCGA-06-5415-01 19 55450816 55450816 G A NLRP7 Silent p.D457D 0.16 TCGA-06-5415-01 19 55708508 55708508 G A PTPRH Missense_Mutation p.T656M 0.25 benign(0.066) TCGA-06-5415-01 1 111435024 111435024 G A CD53 Missense_Mutation p.G41R 0.37 deleterious(0.03) benign(0.032) TCGA-06-5415-01 1 154090286 154090286 C T NUP210L Missense_Mutation p.G512E 0.35 deleterious(0) probably_damaging(0.979) TCGA-06-5415-01 1 1563750 1563750 C T MIB2 Missense_Mutation p.R762C 0.42 tolerated(0.16) benign(0.021) TCGA-06-5415-01 1 215933077 215933077 C T USH2A Missense_Mutation p.R3719H 0.41 probably_damaging(0.991) TCGA-06-5415-01 1 226027611 226027611 C T EPHX1 Silent p.F268F 0.05 TCGA-06-5415-01 1 237838075 237838075 G A RYR2 Missense_Mutation p.R2920Q 0.33 probably_damaging(0.974) TCGA-06-5415-01 1 6537601 6537601 G C PLEKHG5 Missense_Mutation p.L90V 0.34 deleterious(0.03) probably_damaging(0.954) TCGA-06-5415-01 20 17445987 17445987 C T PCSK2 Missense_Mutation p.R407W 0.25 deleterious(0) probably_damaging(1) TCGA-06-5415-01 20 30371716 30371716 G T TPX2 Missense_Mutation p.D469Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-06-5415-01 20 6057034 6057034 G T FERMT1 3'UTR 0.28 TCGA-06-5415-01 21 46047200 46047200 G A KRTAP10-9 Missense_Mutation p.A38T 0.12 tolerated(0.25) unknown(0) TCGA-06-5415-01 22 37491997 37491997 C T TMPRSS6 Missense_Mutation p.V189I 0.14 tolerated(0.2) benign(0.003) TCGA-06-5415-01 2 1271318 1271318 C T SNTG2 Missense_Mutation p.T420M 0.50 deleterious(0.03) benign(0.042) TCGA-06-5415-01 2 179425883 179425883 G A TTN Missense_Mutation p.R28326W 0.40 TCGA-06-5415-01 2 232393454 232393454 G A NMUR1 Missense_Mutation p.T93M 0.37 deleterious(0.02) probably_damaging(0.945) TCGA-06-5415-01 3 136076625 136076625 A - STAG1 Frame_Shift_Del p.L1001Rfs*7 0.42 TCGA-06-5415-01 3 62188854 62188854 C T PTPRG Missense_Mutation p.A462V 0.05 tolerated(1) benign(0.003) TCGA-06-5415-01 4 100534247 100534247 G A MTTP Missense_Mutation p.D723N 0.41 deleterious(0.02) possibly_damaging(0.863) TCGA-06-5415-01 4 166915601 166915601 C T TLL1 Nonsense_Mutation p.R144* 0.35 TCGA-06-5415-01 4 81952456 81952456 G A BMP3 Silent p.R6R 0.62 TCGA-06-5415-01 5 135583350 135583350 G A TRPC7 Silent p.S551S 0.45 TCGA-06-5415-01 5 161324264 161324264 G A GABRA1 Missense_Mutation p.E403K 0.39 tolerated(0.19) benign(0.002) TCGA-06-5415-01 5 19473185 19473185 C T CDH18 3'UTR 0.43 TCGA-06-5415-01 5 86659220 86659220 A G RASA1 Silent p.Q503Q 0.38 TCGA-06-5415-01 5 89986845 89986845 C T GPR98 Missense_Mutation p.P2313L 0.38 probably_damaging(0.913) TCGA-06-5415-01 6 132792715 132792715 G A STX7 Missense_Mutation p.R92C 0.60 deleterious(0) probably_damaging(0.996) TCGA-06-5415-01 6 45882070 45882070 G A CLIC5 Silent p.D320D 0.36 TCGA-06-5415-01 7 100382333 100382333 C T ZAN Silent p.G2236G 0.25 TCGA-06-5415-01 7 112097053 112097053 A - IFRD1 Frame_Shift_Del p.M124* 0.20 TCGA-06-5415-01 7 128493857 128493857 C T FLNC Silent p.I2150I 0.32 TCGA-06-5415-01 7 138453573 138453573 G A ATP6V0A4 Silent p.L81L 0.27 TCGA-06-5415-01 7 142139488 142139488 G A TRBV7-6 Missense_Mutation p.S46L 0.27 deleterious(0.04) benign(0.249) TCGA-06-5415-01 7 142658446 142658446 C T KEL Splice_Site p.X75_splice 0.28 TCGA-06-5415-01 7 31890345 31890345 G A PDE1C Missense_Mutation p.T314M 0.34 deleterious(0) probably_damaging(0.996) TCGA-06-5415-01 7 89856794 89856794 C T STEAP2 Silent p.L334L 0.08 TCGA-06-5415-01 8 144810766 144810766 C T FAM83H Missense_Mutation p.A289T 0.53 tolerated(0.18) benign(0.001) TCGA-06-5415-01 8 144940597 144940597 G A EPPK1 Silent p.P2275P 0.12 TCGA-06-5416-01 10 100003873 100003873 A C R3HCC1L Missense_Mutation p.Q765H 0.38 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 100013398 100013398 G A LOXL4 Missense_Mutation p.R583C 0.47 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 10 100022793 100022793 G A LOXL4 5'UTR 0.26 TCGA-06-5416-01 10 100150454 100150454 G A PYROXD2 Missense_Mutation p.P398L 0.43 deleterious(0.02) benign(0.021) TCGA-06-5416-01 10 100152744 100152744 G A PYROXD2 Silent p.I294I 0.44 TCGA-06-5416-01 10 100155028 100155028 G T PYROXD2 Missense_Mutation p.S237Y 0.19 deleterious(0) possibly_damaging(0.71) TCGA-06-5416-01 10 101090243 101090243 G A CNNM1 Missense_Mutation p.A367T 0.20 deleterious(0) possibly_damaging(0.872) TCGA-06-5416-01 10 101370673 101370673 C A SLC25A28 Missense_Mutation p.W343L 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 101487215 101487215 T G COX15 Missense_Mutation p.Q126H 0.38 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 10 101563840 101563840 C A ABCC2 Missense_Mutation p.S425Y 0.44 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 10 101668841 101668841 C T DNMBP Missense_Mutation p.E775K 0.44 deleterious(0.01) possibly_damaging(0.83) TCGA-06-5416-01 10 101715237 101715237 C T DNMBP Missense_Mutation p.R665Q 0.52 tolerated(0.64) benign(0.043) TCGA-06-5416-01 10 101816848 101816848 G A CPN1 Silent p.C311C 0.22 TCGA-06-5416-01 10 101835723 101835723 C T CPN1 Missense_Mutation p.R122H 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 101960500 101960500 G T CHUK Missense_Mutation p.S536Y 0.13 deleterious(0) benign(0.328) TCGA-06-5416-01 10 101978852 101978852 G T CHUK Missense_Mutation p.T201N 0.19 deleterious(0) possibly_damaging(0.826) TCGA-06-5416-01 10 101992956 101992956 G A CWF19L1 3'UTR 0.19 TCGA-06-5416-01 10 102016234 102016234 C A CWF19L1 Splice_Site p.X97_splice 0.38 TCGA-06-5416-01 10 102048780 102048780 C T PKD2L1 Missense_Mutation p.A762T 0.46 tolerated_low_confidence(0.1) benign(0.002) TCGA-06-5416-01 10 102056050 102056050 C A PKD2L1 Splice_Site p.X396_splice 0.22 TCGA-06-5416-01 10 102116341 102116341 C T SCD Missense_Mutation p.P234S 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 102116413 102116413 C T SCD Missense_Mutation p.L258F 0.43 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 10 102238837 102238837 C T WNT8B Missense_Mutation p.P33S 0.15 tolerated(0.34) benign(0.31) TCGA-06-5416-01 10 102239661 102239661 G A WNT8B Missense_Mutation p.A45T 0.26 tolerated(0.09) possibly_damaging(0.589) TCGA-06-5416-01 10 102258975 102258975 C A SEC31B Missense_Mutation p.S509I 0.25 deleterious(0.01) benign(0.005) TCGA-06-5416-01 10 102262017 102262017 G T SEC31B Missense_Mutation p.F468L 0.44 deleterious(0) possibly_damaging(0.685) TCGA-06-5416-01 10 102304781 102304781 C A HIF1AN Silent p.I217I 0.16 TCGA-06-5416-01 10 102676436 102676436 A G FAM178A Silent p.E98E 0.22 TCGA-06-5416-01 10 102684426 102684426 C T FAM178A Silent p.P556P 0.21 TCGA-06-5416-01 10 102738076 102738076 A G SEMA4G Missense_Mutation p.T154A 0.22 tolerated(0.14) benign(0) TCGA-06-5416-01 10 102749486 102749486 C A C10orf2 Missense_Mutation p.S443R 0.27 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 102762262 102762262 C T LZTS2 5'UTR 0.47 TCGA-06-5416-01 10 102783334 102783334 G A PDZD7 Missense_Mutation p.T134M 0.44 tolerated(0.2) benign(0.044) TCGA-06-5416-01 10 102824358 102824358 C T KAZALD1 Missense_Mutation p.A258V 0.26 tolerated(0.22) possibly_damaging(0.579) TCGA-06-5416-01 10 102824657 102824657 G T KAZALD1 Nonsense_Mutation p.E299* 0.42 TCGA-06-5416-01 10 103344613 103344613 C T POLL Missense_Mutation p.A213T 0.22 tolerated(0.09) benign(0.049) TCGA-06-5416-01 10 103346930 103346930 A T POLL Intron 0.49 TCGA-06-5416-01 10 103354481 103354481 C T DPCD Missense_Mutation p.T44M 0.43 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 10 103361091 103361091 G T DPCD Missense_Mutation p.K134N 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 103372216 103372216 G T FBXW4 Missense_Mutation p.H285Q 0.17 tolerated(0.34) benign(0.019) TCGA-06-5416-01 10 103433266 103433266 G A FBXW4 Missense_Mutation p.S174L 0.42 deleterious(0.01) benign(0.217) TCGA-06-5416-01 10 103531285 103531285 G A FGF8 Nonsense_Mutation p.R127* 0.42 TCGA-06-5416-01 10 103531296 103531296 C A FGF8 Missense_Mutation p.G123V 0.42 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 10 103541320 103541320 G A NPM3 3'UTR 0.18 TCGA-06-5416-01 10 103550749 103550749 C T MGEA5 Silent p.V786V 0.41 TCGA-06-5416-01 10 103557643 103557643 G A MGEA5 Intron 0.39 TCGA-06-5416-01 10 103771498 103771498 G T C10orf76 Missense_Mutation p.F271L 0.28 tolerated(0.62) benign(0.023) TCGA-06-5416-01 10 103826201 103826201 C T HPS6 Silent p.L324L 0.16 TCGA-06-5416-01 10 103826471 103826471 C T HPS6 Missense_Mutation p.R414W 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 103868000 103868000 C A LDB1 Missense_Mutation p.E362D 0.36 deleterious(0) possibly_damaging(0.829) TCGA-06-5416-01 10 103870838 103870838 C T LDB1 Silent p.Q79Q 0.45 TCGA-06-5416-01 10 103871259 103871259 C T LDB1 Silent p.P20P 0.18 TCGA-06-5416-01 10 103900818 103900818 G A PPRC1 Silent p.E851E 0.20 TCGA-06-5416-01 10 103900979 103900979 C A PPRC1 Missense_Mutation p.S905Y 0.48 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-06-5416-01 10 103919997 103919997 T C NOLC1 Silent p.S332S 0.26 TCGA-06-5416-01 10 103921946 103921946 A C NOLC1 Missense_Mutation p.K674Q 0.20 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 10 104103841 104103841 G A GBF1 Missense_Mutation p.R66Q 0.38 tolerated(0.51) benign(0.383) TCGA-06-5416-01 10 104120028 104120028 A C GBF1 Missense_Mutation p.N422T 0.48 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 10 104126163 104126163 G A GBF1 Missense_Mutation p.R777Q 0.44 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 10 104129479 104129479 C T GBF1 Silent p.F1053F 0.53 TCGA-06-5416-01 10 104140987 104140987 G T GBF1 Missense_Mutation p.E1758D 0.16 tolerated_low_confidence(0.36) benign(0.005) TCGA-06-5416-01 10 104160185 104160185 C A NFKB2 Missense_Mutation p.R579S 0.48 tolerated(0.73) benign(0.049) TCGA-06-5416-01 10 104172201 104172201 G A PSD Missense_Mutation p.A562V 0.16 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 104230500 104230500 G A TMEM180 Silent p.A110A 0.44 TCGA-06-5416-01 10 104353399 104353399 G A SUFU Missense_Mutation p.G202S 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 10 104377206 104377206 C T SUFU Intron 0.51 TCGA-06-5416-01 10 104386944 104386944 G A SUFU Missense_Mutation p.E437K 0.23 tolerated(0.11) benign(0.054) TCGA-06-5416-01 10 104404575 104404575 G A TRIM8 Silent p.K67K 0.17 TCGA-06-5416-01 10 104573132 104573132 G A WBP1L 3'UTR 0.29 TCGA-06-5416-01 10 104573173 104573173 G A WBP1L 3'UTR 0.14 TCGA-06-5416-01 10 104590383 104590383 G T CYP17A1 3'UTR 0.56 TCGA-06-5416-01 10 104590528 104590528 G A CYP17A1 Silent p.I486I 0.46 TCGA-06-5416-01 10 104595068 104595068 G A CYP17A1 Silent p.L127L 0.24 TCGA-06-5416-01 10 104595074 104595074 G A CYP17A1 Nonsense_Mutation p.R125* 0.48 TCGA-06-5416-01 10 104596930 104596930 G T CYP17A1 Silent p.I63I 0.43 TCGA-06-5416-01 10 104816683 104816683 C T CNNM2 Missense_Mutation p.R679C 0.19 deleterious(0) possibly_damaging(0.838) TCGA-06-5416-01 10 104828404 104828404 G T CNNM2 Missense_Mutation p.A698S 0.26 deleterious(0.04) benign(0.172) TCGA-06-5416-01 10 104849569 104849569 C A NT5C2 Missense_Mutation p.D516Y 0.48 deleterious(0) benign(0.003) TCGA-06-5416-01 10 104849638 104849638 T C NT5C2 Missense_Mutation p.T493A 0.17 tolerated(0.7) benign(0.001) TCGA-06-5416-01 10 105048538 105048538 G A INA 3'UTR 0.40 TCGA-06-5416-01 10 105143015 105143015 G T TAF5 Nonsense_Mutation p.E519* 0.28 TCGA-06-5416-01 10 105174087 105174087 G T PDCD11 Missense_Mutation p.K457N 0.49 deleterious(0.02) possibly_damaging(0.456) TCGA-06-5416-01 10 105178386 105178386 C T PDCD11 Missense_Mutation p.R701C 0.43 tolerated(0.12) possibly_damaging(0.582) TCGA-06-5416-01 10 105201608 105201608 C T PDCD11 Missense_Mutation p.A1528V 0.24 tolerated(0.94) benign(0.001) TCGA-06-5416-01 10 105207138 105207138 C T CALHM2 Missense_Mutation p.R248H 0.47 deleterious(0) possibly_damaging(0.751) TCGA-06-5416-01 10 105215446 105215446 A G CALHM1 Missense_Mutation p.V205A 0.48 deleterious(0.01) benign(0.079) TCGA-06-5416-01 10 105365611 105365611 C T SH3PXD2A Missense_Mutation p.E430K 0.16 deleterious(0.01) possibly_damaging(0.551) TCGA-06-5416-01 10 105762043 105762043 T C SLK Silent p.R369R 0.45 TCGA-06-5416-01 10 105762940 105762940 A C SLK Missense_Mutation p.E668D 0.40 tolerated(0.05) benign(0.003) TCGA-06-5416-01 10 105770663 105770663 T C SLK Silent p.A958A 0.16 TCGA-06-5416-01 10 105800839 105800839 C T COL17A1 Silent p.S895S 0.44 TCGA-06-5416-01 10 105801073 105801073 G A COL17A1 Nonsense_Mutation p.R879* 0.23 TCGA-06-5416-01 10 105803593 105803593 G A COL17A1 Silent p.I808I 0.44 TCGA-06-5416-01 10 105900610 105900610 G T WDR96 Missense_Mutation p.S1474Y 0.24 deleterious(0.03) possibly_damaging(0.882) TCGA-06-5416-01 10 105922132 105922132 C T WDR96 Nonsense_Mutation p.W1092* 0.28 TCGA-06-5416-01 10 105926424 105926424 C T WDR96 Missense_Mutation p.R954H 0.16 tolerated(0.58) benign(0.002) TCGA-06-5416-01 10 105953629 105953629 G A WDR96 Silent p.H479H 0.41 TCGA-06-5416-01 10 105971863 105971863 C T WDR96 Missense_Mutation p.V213I 0.44 tolerated(0.7) benign(0.002) TCGA-06-5416-01 10 106019532 106019532 G T GSTO1 Missense_Mutation p.K114N 0.18 deleterious(0) probably_damaging(0.97) TCGA-06-5416-01 10 106025870 106025870 T G GSTO1 Missense_Mutation p.F165C 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 10 106139928 106139929 - A CCDC147 Frame_Shift_Ins p.E441Gfs*3 0.33 TCGA-06-5416-01 10 106159236 106159236 G A CCDC147 Missense_Mutation p.R598K 0.19 tolerated(0.96) benign(0.004) TCGA-06-5416-01 10 1061799 1061799 G A GTPBP4 Missense_Mutation p.R572Q 0.22 tolerated(0.16) benign(0.009) TCGA-06-5416-01 10 106214259 106214259 C T CCDC147 Missense_Mutation p.P864S 0.20 tolerated(0.86) benign(0.012) TCGA-06-5416-01 10 1068668 1068668 G A IDI2 Nonsense_Mutation p.R64* 0.17 TCGA-06-5416-01 10 106899202 106899202 G T SORCS3 Missense_Mutation p.E420D 0.23 tolerated(0.3) benign(0.013) TCGA-06-5416-01 10 106971002 106971002 G A SORCS3 Missense_Mutation p.S790N 0.50 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 10 108337210 108337210 G A SORCS1 Intron 0.22 TCGA-06-5416-01 10 108389142 108389142 T C SORCS1 Missense_Mutation p.D827G 0.45 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 10 111633128 111633128 C T XPNPEP1 Silent p.E483E 0.19 TCGA-06-5416-01 10 1118122 1118122 G A WDR37 Silent p.S9S 0.22 TCGA-06-5416-01 10 111883995 111883995 C A ADD3 Missense_Mutation p.S455Y 0.42 deleterious(0.04) probably_damaging(0.971) TCGA-06-5416-01 10 111886190 111886190 C T ADD3 Nonsense_Mutation p.R513* 0.20 TCGA-06-5416-01 10 111893259 111893259 C T ADD3 Silent p.I668I 0.23 TCGA-06-5416-01 10 112044590 112044590 G A MXI1 Missense_Mutation p.E245K 0.14 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 112269869 112269869 G T DUSP5 Missense_Mutation p.K280N 0.20 deleterious(0.01) probably_damaging(0.96) TCGA-06-5416-01 10 112327570 112327570 G A SMC3 5'UTR 0.20 TCGA-06-5416-01 10 112344017 112344017 G T SMC3 Nonsense_Mutation p.E390* 0.50 TCGA-06-5416-01 10 112361823 112361823 G T SMC3 Nonsense_Mutation p.E998* 0.22 TCGA-06-5416-01 10 112771467 112771467 G T SHOC2 Missense_Mutation p.S547I 0.24 deleterious(0) possibly_damaging(0.74) TCGA-06-5416-01 10 113915639 113915639 C A GPAM Missense_Mutation p.R765I 0.21 deleterious(0.02) possibly_damaging(0.83) TCGA-06-5416-01 10 113928672 113928672 C T GPAM Missense_Mutation p.R278Q 0.49 tolerated(0.08) probably_damaging(1) TCGA-06-5416-01 10 114053562 114053562 C A TECTB Missense_Mutation p.L184M 0.23 deleterious(0) possibly_damaging(0.839) TCGA-06-5416-01 10 114154847 114154847 C A ACSL5 Missense_Mutation p.S104Y 0.24 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 10 114164496 114164496 C A ACSL5 Missense_Mutation p.L178I 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 10 114187214 114187214 T G ACSL5 3'UTR 0.16 TCGA-06-5416-01 10 114912120 114912120 C T TCF7L2 Missense_Mutation p.A397V 0.39 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 10 114925655 114925655 C T TCF7L2 Missense_Mutation p.S578F 0.47 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-06-5416-01 10 1149551 1149551 G A WDR37 Missense_Mutation p.E246K 0.45 tolerated(0.07) possibly_damaging(0.899) TCGA-06-5416-01 10 115364663 115364663 T C NRAP Missense_Mutation p.D1311G 0.44 tolerated(0.6) benign(0.184) TCGA-06-5416-01 10 115377271 115377271 A G NRAP Silent p.S972S 0.24 TCGA-06-5416-01 10 115393953 115393953 C T NRAP Missense_Mutation p.S482N 0.24 tolerated(0.15) benign(0.021) TCGA-06-5416-01 10 115423627 115423627 G T NRAP Silent p.P5P 0.12 TCGA-06-5416-01 10 11543197 11543197 C T USP6NL Missense_Mutation p.R113Q 0.38 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 10 115528580 115528580 G A PLEKHS1 Silent p.K116K 0.41 TCGA-06-5416-01 10 115537249 115537249 C A PLEKHS1 Silent p.T416T 0.60 TCGA-06-5416-01 10 115661480 115661480 C T NHLRC2 Nonsense_Mutation p.R399* 0.22 TCGA-06-5416-01 10 115662315 115662315 G T NHLRC2 Missense_Mutation p.R486M 0.16 deleterious(0.05) possibly_damaging(0.617) TCGA-06-5416-01 10 115664638 115664638 G T NHLRC2 Missense_Mutation p.K589N 0.37 tolerated(0.19) benign(0.011) TCGA-06-5416-01 10 115922407 115922407 A G C10orf118 Silent p.H207H 0.23 TCGA-06-5416-01 10 115964640 115964640 C A TDRD1 Missense_Mutation p.L429M 0.15 deleterious(0.03) probably_damaging(0.986) TCGA-06-5416-01 10 115970366 115970366 A G TDRD1 Missense_Mutation p.T471A 0.35 tolerated(0.31) benign(0.01) TCGA-06-5416-01 10 115971676 115971676 C A TDRD1 Missense_Mutation p.S571Y 0.17 deleterious(0) probably_damaging(0.919) TCGA-06-5416-01 10 115973134 115973134 C T TDRD1 Missense_Mutation p.P621S 0.43 tolerated(0.91) probably_damaging(0.986) TCGA-06-5416-01 10 115987797 115987797 G A TDRD1 Missense_Mutation p.V1151I 0.22 tolerated(0.25) possibly_damaging(0.893) TCGA-06-5416-01 10 115987911 115987911 C T TDRD1 Intron 0.21 TCGA-06-5416-01 10 116595344 116595344 C A FAM160B1 Missense_Mutation p.L115M 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 116930820 116930820 G T ATRNL1 Missense_Mutation p.R373I 0.21 deleterious(0.02) possibly_damaging(0.588) TCGA-06-5416-01 10 118138937 118138937 G T CCDC172 3'UTR 0.18 TCGA-06-5416-01 10 118204026 118204026 G A PNLIPRP3 Splice_Site p.X152_splice 0.17 TCGA-06-5416-01 10 118220558 118220558 G A PNLIPRP3 Missense_Mutation p.V216I 0.47 tolerated(0.12) possibly_damaging(0.621) TCGA-06-5416-01 10 118307965 118307965 G A PNLIP Missense_Mutation p.E99K 0.23 tolerated(0.19) possibly_damaging(0.77) TCGA-06-5416-01 10 118319979 118319979 A G PNLIP Missense_Mutation p.H371R 0.11 tolerated(0.29) benign(0.095) TCGA-06-5416-01 10 118354251 118354251 G A PNLIPRP1 Missense_Mutation p.E114K 0.19 tolerated(0.83) benign(0.002) TCGA-06-5416-01 10 118460594 118460594 T C HSPA12A Missense_Mutation p.T101A 0.48 deleterious(0.02) benign(0.307) TCGA-06-5416-01 10 119013577 119013577 G A SLC18A2 Missense_Mutation p.S181N 0.05 tolerated(0.11) benign(0.021) TCGA-06-5416-01 10 119036725 119036725 A C SLC18A2 Missense_Mutation p.N498T 0.24 tolerated(0.2) benign(0.011) TCGA-06-5416-01 10 119044226 119044226 G A PDZD8 Missense_Mutation p.S673L 0.17 tolerated(0.34) benign(0.02) TCGA-06-5416-01 10 119044817 119044817 G A PDZD8 Missense_Mutation p.S476L 0.42 tolerated(0.12) benign(0.014) TCGA-06-5416-01 10 119805388 119805388 T G RAB11FIP2 Missense_Mutation p.K96T 0.20 deleterious(0) benign(0.41) TCGA-06-5416-01 10 11985061 11985061 A G UPF2 Splice_Site p.X1093_splice 0.25 TCGA-06-5416-01 10 11990481 11990481 C A UPF2 Missense_Mutation p.D1021Y 0.48 deleterious(0.01) benign(0.272) TCGA-06-5416-01 10 11994138 11994138 G A UPF2 Silent p.I987I 0.41 TCGA-06-5416-01 10 120353752 120353752 G A PRLHR Silent p.Y335Y 0.51 TCGA-06-5416-01 10 12046579 12046579 T C UPF2 Missense_Mutation p.D485G 0.39 deleterious(0.01) possibly_damaging(0.694) TCGA-06-5416-01 10 120489857 120489857 C A CACUL1 Missense_Mutation p.D145Y 0.24 deleterious(0.01) possibly_damaging(0.893) TCGA-06-5416-01 10 120514258 120514258 T G CACUL1 Missense_Mutation p.E6A 0.41 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 10 12070893 12070893 C T UPF2 Silent p.E332E 0.41 TCGA-06-5416-01 10 12071127 12071127 C A UPF2 Missense_Mutation p.E254D 0.15 tolerated(0.57) benign(0.006) TCGA-06-5416-01 10 120802065 120802065 C A EIF3A Missense_Mutation p.W989C 0.23 tolerated(0.18) probably_damaging(0.995) TCGA-06-5416-01 10 120802283 120802283 C T EIF3A Missense_Mutation p.E917K 0.42 tolerated(0.13) possibly_damaging(0.906) TCGA-06-5416-01 10 121436554 121436554 G A BAG3 Silent p.Q496Q 0.19 TCGA-06-5416-01 10 121436580 121436580 T C BAG3 Missense_Mutation p.V505A 0.40 deleterious(0.04) unknown(0) TCGA-06-5416-01 10 121436841 121436841 G A BAG3 3'UTR 0.16 TCGA-06-5416-01 10 121541206 121541206 G T INPP5F Missense_Mutation p.D80Y 0.11 tolerated(0.06) possibly_damaging(0.663) TCGA-06-5416-01 10 121563685 121563685 G A INPP5F Missense_Mutation p.V373I 0.42 tolerated(0.26) benign(0.036) TCGA-06-5416-01 10 121595140 121595140 G A MCMBP Missense_Mutation p.A542V 0.48 tolerated(0.2) benign(0.029) TCGA-06-5416-01 10 121663749 121663749 G A SEC23IP Missense_Mutation p.R354Q 0.19 deleterious(0) possibly_damaging(0.904) TCGA-06-5416-01 10 12178142 12178142 G A SEC61A2 Silent p.T38T 0.17 TCGA-06-5416-01 10 122263349 122263349 C T PPAPDC1A Missense_Mutation p.P26S 0.46 deleterious(0.05) possibly_damaging(0.882) TCGA-06-5416-01 10 122348946 122348946 G T PPAPDC1A Nonsense_Mutation p.E250* 0.20 TCGA-06-5416-01 10 123661927 123661927 C A ATE1 Missense_Mutation p.E264D 0.29 tolerated(0.51) benign(0.008) TCGA-06-5416-01 10 123781458 123781458 C T TACC2 5'UTR 0.20 TCGA-06-5416-01 10 123843451 123843451 G A TACC2 Missense_Mutation p.G479E 0.45 benign(0.02) TCGA-06-5416-01 10 123843517 123843517 T C TACC2 Missense_Mutation p.L501S 0.24 benign(0) TCGA-06-5416-01 10 123843858 123843858 C T TACC2 Missense_Mutation p.L615F 0.40 benign(0.004) TCGA-06-5416-01 10 123845396 123845396 C T TACC2 Silent p.A1127A 0.38 TCGA-06-5416-01 10 123846576 123846576 G A TACC2 Missense_Mutation p.V1521I 0.43 benign(0.002) TCGA-06-5416-01 10 123846833 123846833 C T TACC2 Silent p.C1606C 0.48 TCGA-06-5416-01 10 124001504 124001504 G A TACC2 Missense_Mutation p.A2794T 0.18 probably_damaging(0.984) TCGA-06-5416-01 10 124008212 124008212 T C TACC2 Missense_Mutation p.L2816P 0.21 probably_damaging(0.979) TCGA-06-5416-01 10 124034607 124034607 C T BTBD16 Missense_Mutation p.S4L 0.17 tolerated(0.16) benign(0) TCGA-06-5416-01 10 124097675 124097675 G A BTBD16 3'UTR 0.58 TCGA-06-5416-01 10 124189191 124189191 G A PLEKHA1 Missense_Mutation p.A318T 0.42 tolerated(0.67) benign(0.001) TCGA-06-5416-01 10 124396761 124396761 G A DMBT1 Missense_Mutation p.R2163Q 0.27 tolerated(0.49) benign(0.075) TCGA-06-5416-01 10 124457734 124457734 G A C10orf120 Missense_Mutation p.R175W 0.34 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 10 1245949 1245949 G A ADARB2 Silent p.G607G 0.18 TCGA-06-5416-01 10 124742793 124742793 T C PSTK Silent p.L172L 0.35 TCGA-06-5416-01 10 124746391 124746391 G A PSTK Missense_Mutation p.D264N 0.39 deleterious(0) probably_damaging(0.962) TCGA-06-5416-01 10 125516830 125516830 C T CPXM2 Missense_Mutation p.E606K 0.43 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 10 125539687 125539687 C T CPXM2 Missense_Mutation p.R325H 0.05 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 10 125557598 125557598 C T CPXM2 Silent p.E261E 0.13 TCGA-06-5416-01 10 126092450 126092450 C A OAT Nonsense_Mutation p.E230* 0.26 TCGA-06-5416-01 10 126311987 126311987 C T FAM53B Missense_Mutation p.D365N 0.14 tolerated(0.15) possibly_damaging(0.656) TCGA-06-5416-01 10 126370827 126370827 G A FAM53B Silent p.T85T 0.40 TCGA-06-5416-01 10 126523466 126523466 T C FAM175B Missense_Mutation p.S392P 0.45 tolerated_low_confidence(0.2) benign(0.034) TCGA-06-5416-01 10 126631076 126631076 G T ZRANB1 Missense_Mutation p.G5V 0.48 tolerated(0.31) benign(0.007) TCGA-06-5416-01 10 126631295 126631295 C A ZRANB1 Missense_Mutation p.S78Y 0.22 tolerated(0.1) benign(0.26) TCGA-06-5416-01 10 126691935 126691935 G A CTBP2 Missense_Mutation p.A602V 0.22 deleterious(0.01) benign(0.133) TCGA-06-5416-01 10 126715566 126715566 G A CTBP2 Missense_Mutation p.R255C 0.42 deleterious_low_confidence(0) benign(0.432) TCGA-06-5416-01 10 127412417 127412417 C T EDRF1 Missense_Mutation p.S141L 0.43 deleterious(0.01) benign(0.374) TCGA-06-5416-01 10 127455475 127455475 A G MMP21 Missense_Mutation p.I489T 0.44 deleterious(0) possibly_damaging(0.845) TCGA-06-5416-01 10 127483513 127483513 G T UROS Missense_Mutation p.S199Y 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 127542592 127542592 C A DHX32 Nonsense_Mutation p.E344* 0.22 TCGA-06-5416-01 10 127693608 127693608 A G FANK1 Missense_Mutation p.D232G 0.46 deleterious(0.01) possibly_damaging(0.715) TCGA-06-5416-01 10 12802966 12802966 T C CAMK1D Missense_Mutation p.F107L 0.17 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 10 128114580 128114580 G A C10orf90 Missense_Mutation p.R681C 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 128191358 128191358 C A C10orf90 Intron 0.23 TCGA-06-5416-01 10 12858263 12858263 C T CAMK1D Missense_Mutation p.R257W 0.34 deleterious(0.01) possibly_damaging(0.846) TCGA-06-5416-01 10 12858286 12858286 G A CAMK1D Silent p.P264P 0.35 TCGA-06-5416-01 10 12870807 12870807 C T CAMK1D Missense_Mutation p.S360L 0.45 deleterious_low_confidence(0.01) benign(0.059) TCGA-06-5416-01 10 128850959 128850959 T G DOCK1 Missense_Mutation p.V718G 0.17 deleterious(0.01) benign(0.002) TCGA-06-5416-01 10 129202691 129202691 C T DOCK1 Missense_Mutation p.R1353W 0.36 deleterious(0) possibly_damaging(0.718) TCGA-06-5416-01 10 12940439 12940439 G A CCDC3 Missense_Mutation p.R264C 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.533) TCGA-06-5416-01 10 129682118 129682118 G T CLRN3 Missense_Mutation p.S84Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 10 129874929 129874929 G T PTPRE Missense_Mutation p.E554D 0.17 tolerated(0.77) benign(0.072) TCGA-06-5416-01 10 129904805 129904805 C A MKI67 Nonsense_Mutation p.E1767* 0.15 TCGA-06-5416-01 10 129908732 129908732 C T MKI67 Missense_Mutation p.A776T 0.21 tolerated(1) benign(0.001) TCGA-06-5416-01 10 13040395 13040395 C T CCDC3 Silent p.S164S 0.49 TCGA-06-5416-01 10 131565324 131565324 C T MGMT 3'UTR 0.42 TCGA-06-5416-01 10 131665449 131665449 G A EBF3 Missense_Mutation p.S323F 0.20 deleterious(0) possibly_damaging(0.768) TCGA-06-5416-01 10 131671796 131671796 A G EBF3 Missense_Mutation p.V234A 0.38 deleterious(0.04) benign(0.008) TCGA-06-5416-01 10 13174103 13174103 G T OPTN Missense_Mutation p.A480S 0.41 tolerated(0.08) possibly_damaging(0.908) TCGA-06-5416-01 10 13239759 13239759 C T MCM10 Missense_Mutation p.S705F 0.32 deleterious(0.01) possibly_damaging(0.866) TCGA-06-5416-01 10 13246254 13246254 C T MCM10 Silent p.C797C 0.52 TCGA-06-5416-01 10 132891437 132891437 C T TCERG1L Silent p.R583R 0.35 TCGA-06-5416-01 10 13323093 13323093 G A PHYH Silent p.F282F 0.34 TCGA-06-5416-01 10 13337512 13337512 C T PHYH Missense_Mutation p.D77N 0.46 tolerated(0.09) benign(0.168) TCGA-06-5416-01 10 13364913 13364913 G T SEPHS1 Missense_Mutation p.L296M 0.39 deleterious(0.02) probably_damaging(0.955) TCGA-06-5416-01 10 133757496 133757496 C A PPP2R2D Missense_Mutation p.L137I 0.48 tolerated(0.19) benign(0.119) TCGA-06-5416-01 10 13386915 13386915 G A SEPHS1 Silent p.Y12Y 0.20 TCGA-06-5416-01 10 133953991 133953991 G T JAKMIP3 Nonsense_Mutation p.E461* 0.45 TCGA-06-5416-01 10 133967326 133967326 G A JAKMIP3 Missense_Mutation p.E711K 0.18 deleterious(0.03) benign(0.062) TCGA-06-5416-01 10 134012443 134012443 C T DPYSL4 Missense_Mutation p.A260V 0.46 deleterious(0.01) benign(0.194) TCGA-06-5416-01 10 134230609 134230609 C A PWWP2B 3'UTR 0.45 TCGA-06-5416-01 10 134261549 134261549 C T C10orf91 Missense_Mutation p.A141V 0.41 deleterious_low_confidence(0) possibly_damaging(0.695) TCGA-06-5416-01 10 134594362 134594362 G A INPP5A Missense_Mutation p.E367K 0.41 tolerated(0.3) possibly_damaging(0.881) TCGA-06-5416-01 10 134660519 134660519 C T TTC40 Missense_Mutation p.A2062T 0.20 tolerated(0.25) probably_damaging(0.977) TCGA-06-5416-01 10 134671236 134671236 G A TTC40 Missense_Mutation p.A1811V 0.37 tolerated(0.06) benign(0.027) TCGA-06-5416-01 10 134671280 134671280 C A TTC40 Missense_Mutation p.Q1796H 0.18 deleterious(0.03) possibly_damaging(0.568) TCGA-06-5416-01 10 135011262 135011262 G A KNDC1 Silent p.E632E 0.21 TCGA-06-5416-01 10 135011986 135011986 G T KNDC1 Missense_Mutation p.Q684H 0.45 deleterious(0.05) benign(0.271) TCGA-06-5416-01 10 135013907 135013907 G A KNDC1 Missense_Mutation p.E978K 0.39 tolerated(0.41) benign(0.012) TCGA-06-5416-01 10 135027482 135027482 C A KNDC1 Missense_Mutation p.S1511R 0.20 tolerated(0.36) possibly_damaging(0.593) TCGA-06-5416-01 10 135076493 135076493 G A ADAM8 3'UTR 0.25 TCGA-06-5416-01 10 135086340 135086340 G A ADAM8 Missense_Mutation p.R223C 0.25 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 10 135087482 135087482 G A ADAM8 Silent p.S93S 0.35 TCGA-06-5416-01 10 135094869 135094869 C A TUBGCP2 Missense_Mutation p.K855N 0.19 tolerated(0.47) benign(0.013) TCGA-06-5416-01 10 135097464 135097464 G A TUBGCP2 Silent p.F717F 0.19 TCGA-06-5416-01 10 135106608 135106608 G A TUBGCP2 Missense_Mutation p.S348L 0.20 deleterious(0) probably_damaging(0.964) TCGA-06-5416-01 10 135165541 135165541 G A PRAP1 Silent p.P53P 0.17 TCGA-06-5416-01 10 135166042 135166042 A G PRAP1 3'UTR 0.23 TCGA-06-5416-01 10 135176361 135176361 G A ECHS1 3'UTR 0.19 TCGA-06-5416-01 10 135183462 135183462 C T ECHS1 Nonsense_Mutation p.W120* 0.45 TCGA-06-5416-01 10 135233741 135233741 G T MTG1 3'UTR 0.49 TCGA-06-5416-01 10 135233792 135233792 C A MTG1 3'UTR 0.24 TCGA-06-5416-01 10 135342139 135342139 A C CYP2E1 Missense_Mutation p.D111A 0.19 deleterious(0.01) benign(0.021) TCGA-06-5416-01 10 135346335 135346335 G A CYP2E1 Missense_Mutation p.R263Q 0.42 tolerated(0.17) benign(0.058) TCGA-06-5416-01 10 135438763 135438763 G A FRG2B Missense_Mutation p.S226F 0.27 deleterious(0) benign(0.002) TCGA-06-5416-01 10 13698688 13698688 G A FRMD4A Silent p.F967F 0.62 TCGA-06-5416-01 10 1405733 1405733 G A ADARB2 Silent p.F189F 0.45 TCGA-06-5416-01 10 1405832 1405832 G A ADARB2 Silent p.F156F 0.43 TCGA-06-5416-01 10 14563151 14563151 C T FAM107B 3'UTR 0.26 TCGA-06-5416-01 10 14941576 14941576 C A SUV39H2 Missense_Mutation p.F296L 0.47 tolerated(1) benign(0) TCGA-06-5416-01 10 14950353 14950353 T A DCLRE1C 3'UTR 0.39 TCGA-06-5416-01 10 14950999 14950999 T C DCLRE1C Missense_Mutation p.N496S 0.40 tolerated_low_confidence(0.23) benign(0.004) TCGA-06-5416-01 10 14951033 14951033 C T DCLRE1C Missense_Mutation p.D485N 0.46 tolerated_low_confidence(0.14) benign(0.014) TCGA-06-5416-01 10 14977506 14977506 C T DCLRE1C Silent p.A140A 0.17 TCGA-06-5416-01 10 15172258 15172258 G A NMT2 Missense_Mutation p.S258L 0.23 tolerated(0.07) possibly_damaging(0.747) TCGA-06-5416-01 10 15290771 15290771 G A FAM171A1 Silent p.S207S 0.22 TCGA-06-5416-01 10 15600105 15600105 C T ITGA8 Missense_Mutation p.E912K 0.19 tolerated(0.1) benign(0.117) TCGA-06-5416-01 10 15689051 15689051 C A ITGA8 Splice_Site p.X334_splice 0.06 TCGA-06-5416-01 10 15761625 15761625 T C ITGA8 Missense_Mutation p.Y49C 0.34 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 16553148 16553148 C T PTER Missense_Mutation p.H315Y 0.47 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 10 16877154 16877154 T G CUBN Missense_Mutation p.R3407S 0.05 tolerated(0.16) benign(0.314) TCGA-06-5416-01 10 16916472 16916472 C T CUBN Missense_Mutation p.G3046E 0.22 deleterious(0) benign(0) TCGA-06-5416-01 10 16942740 16942740 C T CUBN Missense_Mutation p.G2765E 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 16979653 16979653 C T CUBN Missense_Mutation p.G1955E 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 16990589 16990589 G A CUBN Silent p.T1699T 0.23 TCGA-06-5416-01 10 17026165 17026165 G A CUBN Silent p.F1488F 0.19 TCGA-06-5416-01 10 17113918 17113918 G A CUBN Missense_Mutation p.S785F 0.19 tolerated(0.09) benign(0.03) TCGA-06-5416-01 10 17199564 17199564 C A TRDMT1 Missense_Mutation p.D255Y 0.23 deleterious(0.03) probably_damaging(0.914) TCGA-06-5416-01 10 17276710 17276710 G A VIM Missense_Mutation p.A301T 0.19 tolerated(0.08) probably_damaging(0.943) TCGA-06-5416-01 10 17362747 17362747 G A ST8SIA6 3'UTR 0.24 TCGA-06-5416-01 10 17373504 17373504 G T ST8SIA6 Missense_Mutation p.S142Y 0.40 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 10 17891752 17891752 C A MRC1L1 Silent p.I411I 0.89 TCGA-06-5416-01 10 18250570 18250570 G T SLC39A12 Nonsense_Mutation p.E108* 0.18 TCGA-06-5416-01 10 18266965 18266965 G T SLC39A12 Nonsense_Mutation p.E296* 0.14 TCGA-06-5416-01 10 18276534 18276534 C T SLC39A12 Missense_Mutation p.A408V 0.40 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 18331852 18331852 A C SLC39A12 3'UTR 0.19 TCGA-06-5416-01 10 18828646 18828646 G A CACNB2 Missense_Mutation p.R659H 0.17 tolerated_low_confidence(0.27) benign(0.002) TCGA-06-5416-01 10 18875003 18875003 T A NSUN6 Missense_Mutation p.D266V 0.17 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 10 18903417 18903417 C A NSUN6 Nonsense_Mutation p.E183* 0.36 TCGA-06-5416-01 10 18962939 18962939 C A ARL5B Silent p.I122I 0.16 TCGA-06-5416-01 10 20465961 20465961 G A PLXDC2 Missense_Mutation p.R306Q 0.19 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 10 20568883 20568883 T G PLXDC2 3'UTR 0.17 TCGA-06-5416-01 10 21147180 21147180 T G NEBL Missense_Mutation p.M298L 0.23 tolerated(1) benign(0.001) TCGA-06-5416-01 10 21157639 21157639 C A NEBL Missense_Mutation p.R213I 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 21157689 21157689 T A NEBL Missense_Mutation p.E196D 0.37 deleterious(0.05) benign(0.007) TCGA-06-5416-01 10 21803984 21803984 G T SKIDA1 3'UTR 0.47 TCGA-06-5416-01 10 22048425 22048425 C T DNAJC1 Missense_Mutation p.E424K 0.20 tolerated(0.07) benign(0.055) TCGA-06-5416-01 10 22048510 22048510 C T DNAJC1 Silent p.Q395Q 0.24 TCGA-06-5416-01 10 22094953 22094953 G A DNAJC1 Nonsense_Mutation p.R352* 0.38 TCGA-06-5416-01 10 22609084 22609084 G A COMMD3 3'UTR 0.44 TCGA-06-5416-01 10 22653790 22653790 T C SPAG6 Missense_Mutation p.S44P 0.42 tolerated(0.13) benign(0.002) TCGA-06-5416-01 10 22826165 22826165 G A PIP4K2A Missense_Mutation p.R396C 0.36 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 23003178 23003178 C A PIP4K2A Missense_Mutation p.Q26H 0.43 deleterious(0) possibly_damaging(0.895) TCGA-06-5416-01 10 23250948 23250948 C T ARMC3 Nonsense_Mutation p.R225* 0.18 TCGA-06-5416-01 10 23257381 23257381 G T ARMC3 Missense_Mutation p.K293N 0.18 tolerated(0.13) probably_damaging(0.918) TCGA-06-5416-01 10 23297790 23297790 G T ARMC3 Missense_Mutation p.D659Y 0.34 tolerated(0.08) possibly_damaging(0.498) TCGA-06-5416-01 10 23326444 23326444 A C ARMC3 3'UTR 0.20 TCGA-06-5416-01 10 24762785 24762785 C T KIAA1217 Missense_Mutation p.A492V 0.20 deleterious(0.04) possibly_damaging(0.615) TCGA-06-5416-01 10 24825796 24825796 G A KIAA1217 Missense_Mutation p.A1170T 0.37 tolerated(0.33) benign(0.004) TCGA-06-5416-01 10 24832229 24832229 G T KIAA1217 Missense_Mutation p.D1344Y 0.17 deleterious(0) possibly_damaging(0.843) TCGA-06-5416-01 10 24832671 24832671 C T KIAA1217 Missense_Mutation p.S1491F 0.12 deleterious(0.01) benign(0.032) TCGA-06-5416-01 10 24834027 24834027 C T KIAA1217 Missense_Mutation p.R1777C 0.48 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 24873930 24873930 G A ARHGAP21 Missense_Mutation p.T1763M 0.19 deleterious(0.04) benign(0.039) TCGA-06-5416-01 10 24873961 24873961 C T ARHGAP21 Missense_Mutation p.E1753K 0.18 deleterious(0.01) possibly_damaging(0.59) TCGA-06-5416-01 10 24874366 24874366 C T ARHGAP21 Missense_Mutation p.E1618K 0.22 deleterious(0) possibly_damaging(0.84) TCGA-06-5416-01 10 24880923 24880923 C A ARHGAP21 Missense_Mutation p.A1299S 0.49 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 24884909 24884909 C A ARHGAP21 Missense_Mutation p.G1181C 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 24908890 24908890 G T ARHGAP21 Missense_Mutation p.S645Y 0.18 deleterious(0.01) benign(0.373) TCGA-06-5416-01 10 25226193 25226193 C A PRTFDC1 Nonsense_Mutation p.E87* 0.08 TCGA-06-5416-01 10 25312947 25312947 C A THNSL1 Silent p.L265L 0.22 TCGA-06-5416-01 10 255911 255911 G A ZMYND11 Missense_Mutation p.E67K 0.51 tolerated(0.17) probably_damaging(0.993) TCGA-06-5416-01 10 25701358 25701358 G A GPR158 Missense_Mutation p.D431N 0.36 tolerated(0.05) benign(0.147) TCGA-06-5416-01 10 25887246 25887246 G A GPR158 Silent p.S897S 0.22 TCGA-06-5416-01 10 26305796 26305796 G A MYO3A Missense_Mutation p.V186I 0.18 deleterious(0.04) possibly_damaging(0.863) TCGA-06-5416-01 10 26357696 26357696 G T MYO3A Splice_Site p.X352_splice 0.19 TCGA-06-5416-01 10 26443678 26443678 G A MYO3A Missense_Mutation p.D907N 0.45 tolerated(0.16) benign(0.009) TCGA-06-5416-01 10 26443724 26443724 A T MYO3A Missense_Mutation p.K922I 0.16 deleterious(0.04) benign(0.152) TCGA-06-5416-01 10 26462628 26462628 C A MYO3A Silent p.I1145I 0.26 TCGA-06-5416-01 10 26462936 26462936 G T MYO3A Missense_Mutation p.R1248M 0.44 deleterious_low_confidence(0.02) benign(0.396) TCGA-06-5416-01 10 26581879 26581879 A G GAD2 Missense_Mutation p.T515A 0.16 tolerated(0.27) benign(0) TCGA-06-5416-01 10 26800783 26800783 T C APBB1IP Silent p.C213C 0.15 TCGA-06-5416-01 10 26830524 26830524 T G APBB1IP Missense_Mutation p.L353R 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 27332477 27332477 G T ANKRD26 Missense_Mutation p.S680Y 0.24 tolerated(0.53) possibly_damaging(0.814) TCGA-06-5416-01 10 27389078 27389078 C T ANKRD26 Missense_Mutation p.A60T 0.25 tolerated(0.06) benign(0.235) TCGA-06-5416-01 10 27409412 27409412 G A YME1L1 Nonsense_Mutation p.R512* 0.38 TCGA-06-5416-01 10 27475630 27475630 G A MASTL 3'UTR 0.17 TCGA-06-5416-01 10 27507037 27507037 C T ACBD5 Missense_Mutation p.G234D 0.37 tolerated(0.06) benign(0.003) TCGA-06-5416-01 10 27538499 27538499 C A RP11-85G18.6 Intron 0.43 TCGA-06-5416-01 10 27538720 27538720 C A RP11-85G18.6 Intron 0.43 TCGA-06-5416-01 10 27539340 27539340 G T RP11-85G18.6 RNA 0.23 TCGA-06-5416-01 10 28032305 28032305 G A MKX Silent p.L14L 0.23 TCGA-06-5416-01 10 28223955 28223955 C A ARMC4 Nonsense_Mutation p.E827* 0.05 TCGA-06-5416-01 10 28225800 28225800 C A ARMC4 Missense_Mutation p.D703Y 0.23 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 10 28273179 28273179 C A ARMC4 Nonsense_Mutation p.E206* 0.20 TCGA-06-5416-01 10 28283877 28283877 G A ARMC4 Silent p.P65P 0.21 TCGA-06-5416-01 10 286898 286898 C A ZMYND11 Missense_Mutation p.F273L 0.41 deleterious(0.01) benign(0.196) TCGA-06-5416-01 10 29704341 29704341 G T PTCHD3P1 Intron 0.19 TCGA-06-5416-01 10 29776310 29776310 G A SVIL Intron 0.37 TCGA-06-5416-01 10 29777570 29777570 G A SVIL Silent p.S1436S 0.16 TCGA-06-5416-01 10 29779816 29779816 G A SVIL Silent p.N1384N 0.14 TCGA-06-5416-01 10 29812746 29812746 G A SVIL Missense_Mutation p.P933S 0.43 deleterious_low_confidence(0.04) possibly_damaging(0.703) TCGA-06-5416-01 10 30306743 30306743 T C KIAA1462 3'UTR 0.33 TCGA-06-5416-01 10 30316395 30316395 C T KIAA1462 Silent p.P894P 0.22 TCGA-06-5416-01 10 30318108 30318108 G A KIAA1462 Silent p.V323V 0.45 TCGA-06-5416-01 10 30318659 30318659 C T KIAA1462 Missense_Mutation p.A140T 0.18 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 10 30654113 30654113 C T AL161651.1 5'Flank 0.18 TCGA-06-5416-01 10 30655320 30655320 C A AL161651.1 5'Flank 0.28 TCGA-06-5416-01 10 30748326 30748326 C T MAP3K8 Missense_Mutation p.P390L 0.15 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 10 30749866 30749866 C T MAP3K8 3'UTR 0.26 TCGA-06-5416-01 10 31138424 31138424 C T ZNF438 Missense_Mutation p.E304K 0.20 tolerated(0.78) benign(0.045) TCGA-06-5416-01 10 3147644 3147644 C T PFKP Missense_Mutation p.S242F 0.21 tolerated(0.69) benign(0.188) TCGA-06-5416-01 10 3161006 3161006 C T PFKP Missense_Mutation p.A492V 0.21 tolerated(0.26) possibly_damaging(0.708) TCGA-06-5416-01 10 3172059 3172059 T C PFKP Missense_Mutation p.F578L 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 10 3180277 3180277 G T PITRM1 Silent p.I1021I 0.15 TCGA-06-5416-01 10 31809833 31809833 G T ZEB1 Missense_Mutation p.G525W 0.15 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 10 31810670 31810670 G A ZEB1 Missense_Mutation p.A804T 0.47 tolerated(0.2) benign(0.053) TCGA-06-5416-01 10 3189977 3189977 T C PITRM1 Intron 0.25 TCGA-06-5416-01 10 32306131 32306131 G A KIF5B Missense_Mutation p.R901C 0.20 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 10 32974942 32974942 G T C10ORF68 Nonsense_Mutation p.E30* 0.16 TCGA-06-5416-01 10 33214829 33214829 G A ITGB1 Silent p.F252F 0.19 TCGA-06-5416-01 10 33471662 33471662 C T NRP1 Missense_Mutation p.D816N 0.14 tolerated(0.28) benign(0.004) TCGA-06-5416-01 10 33475161 33475161 G T NRP1 Missense_Mutation p.S773Y 0.40 tolerated(0.48) probably_damaging(0.934) TCGA-06-5416-01 10 33495139 33495139 G T NRP1 Intron 0.30 TCGA-06-5416-01 10 33502377 33502377 G A NRP1 Silent p.I517I 0.40 TCGA-06-5416-01 10 33515119 33515119 G A NRP1 Silent p.I360I 0.20 TCGA-06-5416-01 10 33552680 33552680 C A NRP1 Missense_Mutation p.E184D 0.48 tolerated(0.29) probably_damaging(0.968) TCGA-06-5416-01 10 34420423 34420423 G A PARD3 Missense_Mutation p.R1173C 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 10 35103914 35103914 T G PARD3 Missense_Mutation p.T4P 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 35305268 35305268 T C CUL2 Missense_Mutation p.Y599C 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 10 35464572 35464572 T C CREM Intron 0.20 TCGA-06-5416-01 10 35818908 35818908 G A CCNY Missense_Mutation p.D137N 0.45 tolerated(0.59) benign(0.011) TCGA-06-5416-01 10 35819093 35819093 G A CCNY Silent p.E167E 0.19 TCGA-06-5416-01 10 37421205 37421205 G T ANKRD30A Missense_Mutation p.R127I 0.20 deleterious(0.01) probably_damaging(0.928) TCGA-06-5416-01 10 37508330 37508330 T C ANKRD30A Silent p.C1174C 0.15 TCGA-06-5416-01 10 38120471 38120471 C T ZNF248 3'UTR 0.45 TCGA-06-5416-01 10 38120796 38120796 T G ZNF248 Missense_Mutation p.E496A 0.46 deleterious(0.02) possibly_damaging(0.778) TCGA-06-5416-01 10 38120986 38120986 C A ZNF248 Nonsense_Mutation p.E433* 0.13 TCGA-06-5416-01 10 38121426 38121426 C T ZNF248 Missense_Mutation p.G286E 0.18 tolerated(1) benign(0.028) TCGA-06-5416-01 10 38345319 38345319 A T ZNF33A Missense_Mutation p.K756I 0.41 deleterious(0) probably_damaging(0.953) TCGA-06-5416-01 10 38353048 38353048 C T ZNF33A 3'Flank 0.16 TCGA-06-5416-01 10 38406631 38406631 T A ZNF37A Missense_Mutation p.D184E 0.42 tolerated(0.53) benign(0.122) TCGA-06-5416-01 10 38466868 38466868 C G RP11-508N22.9 RNA 0.12 TCGA-06-5416-01 10 43018676 43018676 G A ZNF37BP RNA 0.20 TCGA-06-5416-01 10 43088092 43088092 C A ZNF33B Missense_Mutation p.R769I 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-06-5416-01 10 43088397 43088397 A G ZNF33B Silent p.C667C 0.49 TCGA-06-5416-01 10 43280976 43280976 C T BMS1 Nonsense_Mutation p.R75* 0.47 TCGA-06-5416-01 10 43287193 43287193 C A BMS1 Missense_Mutation p.S252Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 43312052 43312052 C A BMS1 Missense_Mutation p.L779I 0.18 tolerated(0.16) benign(0.013) TCGA-06-5416-01 10 43315744 43315744 C T BMS1 Nonsense_Mutation p.R881* 0.22 TCGA-06-5416-01 10 43316063 43316063 C T BMS1 Silent p.I959I 0.19 TCGA-06-5416-01 10 43597791 43597791 C T RET Silent p.N113N 0.20 TCGA-06-5416-01 10 43606717 43606717 G A RET Silent p.L442L 0.43 TCGA-06-5416-01 10 43615600 43615600 C T RET Silent p.F893F 0.14 TCGA-06-5416-01 10 43623800 43623800 C T RET 3'UTR 0.17 TCGA-06-5416-01 10 43679005 43679005 C T CSGALNACT2 3'UTR 0.20 TCGA-06-5416-01 10 43696295 43696295 C A RASGEF1A Missense_Mutation p.Q167H 0.17 tolerated(0.12) benign(0.099) TCGA-06-5416-01 10 45465647 45465647 G T RASSF4 5'UTR 0.13 TCGA-06-5416-01 10 45473433 45473433 G A C10orf10 Missense_Mutation p.R16W 0.15 deleterious(0) probably_damaging(0.942) TCGA-06-5416-01 10 45798853 45798853 C A OR13A1 3'UTR 0.34 TCGA-06-5416-01 10 45799015 45799015 C T OR13A1 Missense_Mutation p.A286T 0.38 tolerated(0.68) benign(0.003) TCGA-06-5416-01 10 45799730 45799730 G T OR13A1 Missense_Mutation p.S47R 0.38 tolerated(0.35) benign(0.243) TCGA-06-5416-01 10 45919488 45919488 G T ALOX5 Splice_Site p.X185_splice 0.43 TCGA-06-5416-01 10 45953722 45953722 G A MARCH8 Missense_Mutation p.P281S 0.21 deleterious_low_confidence(0.03) benign(0.01) TCGA-06-5416-01 10 459968 459968 C T DIP2C Silent p.T314T 0.48 TCGA-06-5416-01 10 46111833 46111833 C A ZFAND4 3'UTR 0.41 TCGA-06-5416-01 10 46121848 46121848 G T ZFAND4 Missense_Mutation p.L475I 0.23 tolerated(0.09) benign(0.024) TCGA-06-5416-01 10 46250392 46250392 G A FAM21C Missense_Mutation p.D417N 0.24 tolerated(0.05) probably_damaging(0.984) TCGA-06-5416-01 10 46254842 46254842 A G FAM21C Missense_Mutation p.D543G 0.18 deleterious(0.01) probably_damaging(0.945) TCGA-06-5416-01 10 46321466 46321466 C A AGAP4 Missense_Mutation p.R630L 0.15 tolerated(0.54) probably_damaging(0.994) TCGA-06-5416-01 10 46967629 46967629 G A SYT15 Missense_Mutation p.R150W 0.06 deleterious(0.02) benign(0.075) TCGA-06-5416-01 10 46998954 46998954 C A GPRIN2 Missense_Mutation p.S25Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 47086847 47086847 A G NPY4R Missense_Mutation p.K22E 0.14 tolerated(0.75) benign(0.003) TCGA-06-5416-01 10 47747117 47747117 C T ANXA8L2 Silent p.A2A 0.41 TCGA-06-5416-01 10 47911640 47911640 G A FAM21B Missense_Mutation p.D373N 1.00 tolerated(1) probably_damaging(0.982) TCGA-06-5416-01 10 48260799 48260799 C T ANXA8 Silent p.I59I 0.33 TCGA-06-5416-01 10 48389911 48389911 G A RBP3 Missense_Mutation p.R323C 0.23 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 10 48390376 48390376 C T RBP3 Missense_Mutation p.D168N 0.24 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 10 48949775 48949775 C T BMS1P5 RNA 0.44 TCGA-06-5416-01 10 49395257 49395257 T C FRMPD2 Silent p.P748P 0.21 TCGA-06-5416-01 10 49459786 49459786 T C FRMPD2 Intron 0.47 TCGA-06-5416-01 10 49609667 49609667 T A MAPK8 5'UTR 0.19 TCGA-06-5416-01 10 49617954 49617954 G A MAPK8 Silent p.Q95Q 0.16 TCGA-06-5416-01 10 49687663 49687663 G A ARHGAP22 Missense_Mutation p.S156L 0.32 tolerated_low_confidence(0.13) benign(0.09) TCGA-06-5416-01 10 5008218 5008218 G A AKR1C1 Missense_Mutation p.R66Q 0.21 tolerated(0.15) benign(0.043) TCGA-06-5416-01 10 5009343 5009343 A C AKR1C1 Intron 0.31 TCGA-06-5416-01 10 50227615 50227615 G T VSTM4 3'UTR 0.36 TCGA-06-5416-01 10 50315919 50315919 G A VSTM4 Silent p.A59A 0.50 TCGA-06-5416-01 10 50374999 50374999 G A C10orf128 Silent p.F51F 0.17 TCGA-06-5416-01 10 50531036 50531036 C A C10orf71 Missense_Mutation p.S149Y 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 50531272 50531272 G A C10orf71 Missense_Mutation p.A228T 0.56 tolerated(0.46) benign(0.133) TCGA-06-5416-01 10 50531701 50531701 G A C10orf71 Missense_Mutation p.D371N 0.20 tolerated(0.19) possibly_damaging(0.888) TCGA-06-5416-01 10 50532215 50532215 T C C10orf71 Missense_Mutation p.V542A 0.25 tolerated(0.42) benign(0.019) TCGA-06-5416-01 10 50902031 50902031 G T C10orf53 Intron 0.25 TCGA-06-5416-01 10 50902572 50902572 C A C10orf53 Intron 0.20 TCGA-06-5416-01 10 50944501 50944501 G A OGDHL Missense_Mutation p.R886W 0.25 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 10 50950947 50950947 C T OGDHL Missense_Mutation p.A647T 0.22 deleterious(0.03) possibly_damaging(0.738) TCGA-06-5416-01 10 51769571 51769571 G T AGAP6 Missense_Mutation p.E562D 0.14 tolerated(0.05) possibly_damaging(0.679) TCGA-06-5416-01 10 5204843 5204843 C A AKR1CL1 Missense_Mutation p.K78N 0.16 deleterious(0.02) possibly_damaging(0.693) TCGA-06-5416-01 10 52071148 52071148 G A SGMS1 Nonsense_Mutation p.R257* 0.52 TCGA-06-5416-01 10 52502698 52502698 G A ASAH2B Missense_Mutation p.R5Q 0.18 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 10 5254605 5254605 G T AKR1C4 Missense_Mutation p.Q199H 0.39 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 10 52566531 52566531 A C A1CF Silent p.T581T 0.44 TCGA-06-5416-01 10 52913011 52913011 T C PRKG1 Silent p.C133C 0.21 TCGA-06-5416-01 10 53457466 53457466 G A CSTF2T Missense_Mutation p.A615V 0.41 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 10 53458476 53458476 A C CSTF2T Silent p.G278G 0.17 TCGA-06-5416-01 10 54076165 54076165 A G DKK1 Missense_Mutation p.T173A 0.19 tolerated(0.13) probably_damaging(0.917) TCGA-06-5416-01 10 55566733 55566733 G T PCDH15 Missense_Mutation p.S1551Y 0.22 deleterious_low_confidence(0) benign(0.355) TCGA-06-5416-01 10 55581550 55581550 A C PCDH15 3'UTR 0.21 TCGA-06-5416-01 10 5682535 5682535 C T ASB13 3'UTR 0.21 TCGA-06-5416-01 10 5682792 5682792 C A ASB13 Missense_Mutation p.K237N 0.50 tolerated(0.46) benign(0.003) TCGA-06-5416-01 10 5789317 5789317 C T FAM208B Silent p.F1311F 0.50 TCGA-06-5416-01 10 5790832 5790832 C T FAM208B Silent p.V1816V 0.39 TCGA-06-5416-01 10 5791088 5791088 G A FAM208B Missense_Mutation p.V1902I 0.48 tolerated(0.32) benign(0.001) TCGA-06-5416-01 10 5799582 5799582 C T FAM208B Missense_Mutation p.R2278C 0.21 tolerated(0.15) benign(0.022) TCGA-06-5416-01 10 5800922 5800922 A G FAM208B Missense_Mutation p.Y2320C 0.48 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 10 5937085 5937085 G A FBXO18 Missense_Mutation p.G30D 0.44 deleterious_low_confidence(0) benign(0) TCGA-06-5416-01 10 5945120 5945120 A G FBXO18 Missense_Mutation p.T98A 0.24 tolerated(0.11) benign(0.011) TCGA-06-5416-01 10 5951162 5951162 G A FBXO18 Missense_Mutation p.E360K 0.46 tolerated(0.34) benign(0.04) TCGA-06-5416-01 10 5963227 5963227 C T FBXO18 Missense_Mutation p.R754W 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 60148493 60148493 G T TFAM Nonsense_Mutation p.E119* 0.46 TCGA-06-5416-01 10 60549155 60549155 C T BICC1 Missense_Mutation p.S245F 0.19 deleterious(0) benign(0.257) TCGA-06-5416-01 10 60553250 60553250 C A BICC1 Missense_Mutation p.L352I 0.45 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 10 60588535 60588535 C T BICC1 Nonsense_Mutation p.R937* 0.12 TCGA-06-5416-01 10 6063566 6063566 A G IL2RA Missense_Mutation p.V153A 0.21 tolerated(0.65) benign(0.138) TCGA-06-5416-01 10 61004986 61004986 G A PHYHIPL Missense_Mutation p.A256T 0.23 deleterious(0.01) possibly_damaging(0.707) TCGA-06-5416-01 10 61022391 61022391 G A FAM13C Silent p.L347L 0.40 TCGA-06-5416-01 10 6104112 6104112 C T IL2RA Translation_Start_Site p.M1? 0.18 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 10 6146914 6146914 T G RBM17 Missense_Mutation p.F87L 0.22 tolerated(0.35) benign(0.112) TCGA-06-5416-01 10 61564207 61564207 G A CCDC6 Missense_Mutation p.S359F 0.15 deleterious(0.02) possibly_damaging(0.829) TCGA-06-5416-01 10 61572468 61572468 T C CCDC6 Missense_Mutation p.M258V 0.39 tolerated(0.15) benign(0.065) TCGA-06-5416-01 10 61815694 61815694 T C ANK3 Missense_Mutation p.T4263A 0.44 benign(0) TCGA-06-5416-01 10 61828427 61828427 G A ANK3 Missense_Mutation p.A4071V 0.20 benign(0.002) TCGA-06-5416-01 10 61830403 61830403 G A ANK3 Silent p.I3412I 0.23 TCGA-06-5416-01 10 61832967 61832967 G A ANK3 Missense_Mutation p.R2558C 0.21 benign(0.249) TCGA-06-5416-01 10 61834518 61834518 T A ANK3 Missense_Mutation p.I2041F 0.45 benign(0.001) TCGA-06-5416-01 10 61845002 61845002 G A ANK3 Missense_Mutation p.S1253L 0.39 possibly_damaging(0.846) TCGA-06-5416-01 10 61932881 61932881 G T ANK3 Missense_Mutation p.L750I 0.14 benign(0.291) TCGA-06-5416-01 10 62645903 62645903 G A RHOBTB1 Silent p.F514F 0.27 TCGA-06-5416-01 10 62648065 62648065 T C RHOBTB1 Missense_Mutation p.N454S 0.18 tolerated(0.15) probably_damaging(0.998) TCGA-06-5416-01 10 62648566 62648566 G A RHOBTB1 Missense_Mutation p.T287I 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 10 62670739 62670739 G A RHOBTB1 Missense_Mutation p.R68C 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 62671244 62671244 G A RHOBTB1 Silent p.V19V 0.22 TCGA-06-5416-01 10 63212897 63212897 C T TMEM26 5'UTR 0.23 TCGA-06-5416-01 10 63212941 63212941 G T TMEM26 5'UTR 0.50 TCGA-06-5416-01 10 63700046 63700046 A G ARID5B Silent p.G127G 0.39 TCGA-06-5416-01 10 63851828 63851828 C A ARID5B Missense_Mutation p.S869Y 0.24 tolerated(0.4) benign(0.172) TCGA-06-5416-01 10 64022442 64022442 C T RTKN2 Missense_Mutation p.A67T 0.19 tolerated(0.07) benign(0.059) TCGA-06-5416-01 10 64022544 64022544 G A RTKN2 Nonsense_Mutation p.R33* 0.51 TCGA-06-5416-01 10 64573473 64573473 C T EGR2 Missense_Mutation p.A309T 0.42 tolerated(0.19) benign(0.057) TCGA-06-5416-01 10 64573476 64573476 C T EGR2 Missense_Mutation p.A308T 0.21 tolerated(0.34) benign(0.006) TCGA-06-5416-01 10 64573479 64573479 C T EGR2 Missense_Mutation p.A307T 0.44 tolerated(0.12) benign(0.057) TCGA-06-5416-01 10 64574211 64574211 C T EGR2 Missense_Mutation p.D63N 0.45 tolerated(0.15) probably_damaging(0.956) TCGA-06-5416-01 10 64575899 64575899 C T EGR2 5'UTR 0.11 TCGA-06-5416-01 10 64913621 64913621 G A NRBF2 Silent p.E169E 0.19 TCGA-06-5416-01 10 64943274 64943274 A T JMJD1C Silent p.V2339V 0.17 TCGA-06-5416-01 10 64944494 64944494 C T JMJD1C Missense_Mutation p.E2279K 0.42 deleterious(0.01) possibly_damaging(0.788) TCGA-06-5416-01 10 64974136 64974136 G T JMJD1C Silent p.V597V 0.17 TCGA-06-5416-01 10 65225363 65225363 G A JMJD1C Silent p.G20G 0.12 TCGA-06-5416-01 10 6557104 6557104 G A PRKCQ Intron 0.28 TCGA-06-5416-01 10 67680154 67680154 G A CTNNA3 Silent p.G874G 0.42 TCGA-06-5416-01 10 68381502 68381502 C T CTNNA3 Missense_Mutation p.G441E 0.51 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 10 68687114 68687114 C A LRRTM3 Missense_Mutation p.S147Y 0.22 deleterious(0.03) possibly_damaging(0.793) TCGA-06-5416-01 10 68979587 68979587 G T CTNNA3 Silent p.A207A 0.40 TCGA-06-5416-01 10 69908141 69908141 C T MYPN Missense_Mutation p.P388S 0.19 tolerated(0.19) benign(0.004) TCGA-06-5416-01 10 69935124 69935124 C A MYPN Missense_Mutation p.P870Q 0.37 tolerated(0.07) benign(0.24) TCGA-06-5416-01 10 69961629 69961629 G T MYPN Missense_Mutation p.Q1179H 0.44 deleterious(0) probably_damaging(0.923) TCGA-06-5416-01 10 70051941 70051941 C A PBLD Missense_Mutation p.R113I 0.40 deleterious(0.05) benign(0.062) TCGA-06-5416-01 10 70178819 70178819 G T DNA2 Missense_Mutation p.S1066Y 0.17 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 10 70202728 70202728 G A DNA2 Missense_Mutation p.S540L 0.51 tolerated(0.07) possibly_damaging(0.766) TCGA-06-5416-01 10 70404855 70404855 C T TET1 Missense_Mutation p.S790F 0.20 tolerated(0.21) possibly_damaging(0.723) TCGA-06-5416-01 10 70446447 70446447 C T TET1 Missense_Mutation p.S1796L 0.24 tolerated(0.08) benign(0.016) TCGA-06-5416-01 10 70520777 70520777 G A CCAR1 Missense_Mutation p.R645Q 0.20 deleterious(0.01) possibly_damaging(0.757) TCGA-06-5416-01 10 70551030 70551030 C T CCAR1 3'UTR 0.23 TCGA-06-5416-01 10 70645121 70645121 G T STOX1 Missense_Mutation p.Q523H 0.40 tolerated(0.1) benign(0.06) TCGA-06-5416-01 10 70652404 70652404 A C STOX1 Missense_Mutation p.N961T 0.39 tolerated(0.27) benign(0.421) TCGA-06-5416-01 10 70856932 70856932 G A SRGN Missense_Mutation p.E58K 0.19 tolerated(0.09) benign(0.037) TCGA-06-5416-01 10 70916813 70916813 G T VPS26A Nonsense_Mutation p.E94* 0.15 TCGA-06-5416-01 10 70916842 70916842 G A VPS26A Silent p.Q103Q 0.19 TCGA-06-5416-01 10 70968397 70968397 G A SUPV3L1 Missense_Mutation p.R656Q 0.21 deleterious(0.03) possibly_damaging(0.867) TCGA-06-5416-01 10 71000488 71000488 C T HKDC1 Silent p.C224C 0.15 TCGA-06-5416-01 10 71010153 71010153 G A HKDC1 Missense_Mutation p.A560T 0.47 tolerated(0.24) benign(0.002) TCGA-06-5416-01 10 71018602 71018602 G T HKDC1 Missense_Mutation p.K701N 0.20 deleterious(0.04) benign(0.003) TCGA-06-5416-01 10 71103705 71103705 G A HK1 Silent p.K66K 0.17 TCGA-06-5416-01 10 71158480 71158480 C T HK1 Silent p.G839G 0.46 TCGA-06-5416-01 10 71158494 71158494 C T HK1 Missense_Mutation p.A844V 0.16 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 10 71688705 71688705 C A COL13A1 Missense_Mutation p.L468I 0.20 tolerated(0.07) probably_damaging(0.994) TCGA-06-5416-01 10 71689821 71689821 C A COL13A1 Missense_Mutation p.P492H 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 71696527 71696527 C T COL13A1 Missense_Mutation p.P585S 0.15 tolerated(0.24) probably_damaging(0.998) TCGA-06-5416-01 10 71969346 71969346 C T PPA1 Missense_Mutation p.E203K 0.22 tolerated(0.22) benign(0.005) TCGA-06-5416-01 10 72015425 72015425 C T NPFFR1 Missense_Mutation p.R194H 0.29 tolerated(0.54) benign(0.005) TCGA-06-5416-01 10 72020435 72020435 G A NPFFR1 Missense_Mutation p.S128L 0.47 deleterious(0) probably_damaging(0.929) TCGA-06-5416-01 10 7214521 7214521 T G SFMBT2 Missense_Mutation p.K696T 0.21 deleterious(0) possibly_damaging(0.848) TCGA-06-5416-01 10 7244444 7244444 T C SFMBT2 Silent p.K495K 0.25 TCGA-06-5416-01 10 72534952 72534952 C T TBATA Silent p.P255P 0.37 TCGA-06-5416-01 10 73059019 73059019 C T UNC5B Silent p.T941T 0.43 TCGA-06-5416-01 10 73122375 73122375 C A SLC29A3 3'UTR 0.49 TCGA-06-5416-01 10 73122392 73122392 T C SLC29A3 3'UTR 0.19 TCGA-06-5416-01 10 73326621 73326621 C T CDH23 Silent p.R184R 0.17 TCGA-06-5416-01 10 73511483 73511483 C T C10orf54 Silent p.S280S 0.22 TCGA-06-5416-01 10 73520500 73520500 G T C10orf54 Intron 0.18 TCGA-06-5416-01 10 73556808 73556808 G A CDH23 Intron 0.21 TCGA-06-5416-01 10 73556944 73556944 G A CDH23 Missense_Mutation p.D26N 0.29 deleterious(0.02) possibly_damaging(0.819) TCGA-06-5416-01 10 73556956 73556956 C T CDH23 Missense_Mutation p.R30C 0.29 deleterious(0.01) possibly_damaging(0.766) TCGA-06-5416-01 10 73558989 73558989 C T CDH23 Silent p.I152I 0.44 TCGA-06-5416-01 10 73565733 73565733 C T CDH23 Silent p.R441R 0.19 TCGA-06-5416-01 10 73590934 73590934 C A PSAP Missense_Mutation p.E108D 0.26 tolerated(0.08) benign(0.098) TCGA-06-5416-01 10 73823971 73823971 C T SPOCK2 Missense_Mutation p.R319H 0.33 deleterious(0.03) probably_damaging(0.954) TCGA-06-5416-01 10 73956582 73956582 G A ASCC1 Missense_Mutation p.A187V 0.21 tolerated(0.15) benign(0.041) TCGA-06-5416-01 10 74103239 74103239 G A DNAJB12 Silent p.I148I 0.27 TCGA-06-5416-01 10 7412265 7412265 G T SFMBT2 Missense_Mutation p.A58D 0.23 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 10 7423901 7423901 G A SFMBT2 5'UTR 0.15 TCGA-06-5416-01 10 74267981 74267981 A C MICU1 Missense_Mutation p.F195C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 74631139 74631139 G A MCU Missense_Mutation p.R221Q 0.42 deleterious(0.01) benign(0.322) TCGA-06-5416-01 10 74631307 74631307 C T MCU Missense_Mutation p.A277V 0.17 tolerated(0.16) benign(0.401) TCGA-06-5416-01 10 74692229 74692229 C A OIT3 Missense_Mutation p.L529I 0.21 tolerated(0.42) benign(0.009) TCGA-06-5416-01 10 74695288 74695288 G A PLA2G12B 3'UTR 0.41 TCGA-06-5416-01 10 74806744 74806744 C T P4HA1 Missense_Mutation p.R339H 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 10 74899176 74899176 A G ECD Missense_Mutation p.S471P 0.38 tolerated(1) benign(0.004) TCGA-06-5416-01 10 75053198 75053198 A G TTC18 Intron 0.26 TCGA-06-5416-01 10 75185937 75185937 C T MSS51 Missense_Mutation p.R234Q 0.23 deleterious(0.01) probably_damaging(0.922) TCGA-06-5416-01 10 75277129 75277129 C A USP54 Missense_Mutation p.G1019C 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.907) TCGA-06-5416-01 10 75279535 75279535 A G USP54 Intron 0.24 TCGA-06-5416-01 10 75335555 75335555 C T USP54 Intron 0.32 TCGA-06-5416-01 10 75394271 75394271 C T MYOZ1 Missense_Mutation p.G158D 0.18 tolerated(0.19) probably_damaging(0.989) TCGA-06-5416-01 10 75406762 75406762 C T SYNPO2L Missense_Mutation p.R883Q 0.25 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 10 75523716 75523716 C T SEC24C Missense_Mutation p.P401L 0.41 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 75525886 75525886 G T SEC24C Missense_Mutation p.D509Y 0.48 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 75535220 75535220 C A FUT11 Intron 0.29 TCGA-06-5416-01 10 75565362 75565362 G A NDST2 Nonsense_Mutation p.R577* 0.48 TCGA-06-5416-01 10 75567788 75567788 C T NDST2 Missense_Mutation p.G120D 0.21 deleterious(0.05) probably_damaging(0.987) TCGA-06-5416-01 10 75602295 75602295 C T CAMK2G Missense_Mutation p.R275Q 0.30 deleterious_low_confidence(0) benign(0.007) TCGA-06-5416-01 10 75673067 75673067 C T PLAU Nonsense_Mutation p.R130* 0.44 TCGA-06-5416-01 10 75843206 75843206 G A VCL Silent p.R319R 0.25 TCGA-06-5416-01 10 75867050 75867050 G T VCL Nonsense_Mutation p.E833* 0.16 TCGA-06-5416-01 10 75884234 75884234 G T AP3M1 Missense_Mutation p.L354I 0.24 tolerated(0.24) benign(0.246) TCGA-06-5416-01 10 7658058 7658058 G T ITIH5 Missense_Mutation p.L276I 0.37 tolerated(0.11) benign(0.209) TCGA-06-5416-01 10 76729489 76729489 G A KAT6B Missense_Mutation p.E268K 0.24 probably_damaging(0.992) TCGA-06-5416-01 10 76780883 76780883 G T KAT6B Splice_Site p.X954_splice 0.40 TCGA-06-5416-01 10 76803571 76803571 C T DUPD1 Silent p.A135A 0.07 TCGA-06-5416-01 10 7682791 7682791 G A ITIH5 Silent p.G109G 0.18 TCGA-06-5416-01 10 7708825 7708825 G A ITIH5 Silent p.L11L 0.14 TCGA-06-5416-01 10 77159531 77159531 G A ZNF503 Missense_Mutation p.A306V 0.22 tolerated(0.08) benign(0.071) TCGA-06-5416-01 10 7762923 7762923 G A ITIH2 Silent p.Q245Q 0.20 TCGA-06-5416-01 10 7786808 7786808 G A ITIH2 Silent p.E821E 0.42 TCGA-06-5416-01 10 7844254 7844254 A G ATP5C1 Missense_Mutation p.D220G 0.43 tolerated(0.11) possibly_damaging(0.731) TCGA-06-5416-01 10 79601670 79601670 G A DLG5 Missense_Mutation p.A469V 0.20 tolerated(0.95) probably_damaging(0.994) TCGA-06-5416-01 10 79601919 79601919 G A DLG5 Missense_Mutation p.A386V 0.45 tolerated(0.61) probably_damaging(0.993) TCGA-06-5416-01 10 79781642 79781642 C T POLR3A Missense_Mutation p.V342I 0.23 tolerated(0.07) benign(0.086) TCGA-06-5416-01 10 8006536 8006536 G T TAF3 Nonsense_Mutation p.E355* 0.20 TCGA-06-5416-01 10 8093142 8093142 G A GATA3 5'Flank 0.31 TCGA-06-5416-01 10 8105955 8105955 G A GATA3 Splice_Site p.X260_splice 0.44 TCGA-06-5416-01 10 81111249 81111249 G A PPIF Missense_Mutation p.D108N 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 10 8111468 8111468 G A GATA3 Silent p.A319A 0.37 TCGA-06-5416-01 10 8111504 8111504 G A GATA3 Silent p.R331R 0.51 TCGA-06-5416-01 10 81317231 81317231 G A SFTPA2 Missense_Mutation p.R161C 0.38 tolerated(0.08) possibly_damaging(0.601) TCGA-06-5416-01 10 81317295 81317295 G T SFTPA2 Missense_Mutation p.F139L 0.19 tolerated(0.15) probably_damaging(0.97) TCGA-06-5416-01 10 81373539 81373539 C A SFTPA1 Missense_Mutation p.F154L 0.08 tolerated(0.13) probably_damaging(0.999) TCGA-06-5416-01 10 81373771 81373771 G A SFTPA1 Missense_Mutation p.A232T 0.43 tolerated(0.15) possibly_damaging(0.551) TCGA-06-5416-01 10 81373818 81373818 G A SFTPA1 Silent p.Q247Q 0.18 TCGA-06-5416-01 10 81697712 81697712 G A SFTPD Missense_Mutation p.P342S 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 82036291 82036291 G A MAT1A Silent p.I203I 0.17 TCGA-06-5416-01 10 82098864 82098864 G A DYDC1 Silent p.L130L 0.22 TCGA-06-5416-01 10 82180354 82180354 C T FAM213A Missense_Mutation p.A44V 0.18 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 10 82187113 82187113 G A FAM213A Missense_Mutation p.R146Q 0.46 deleterious(0) possibly_damaging(0.775) TCGA-06-5416-01 10 82269192 82269192 G A TSPAN14 Missense_Mutation p.D139N 0.20 deleterious(0) possibly_damaging(0.809) TCGA-06-5416-01 10 82280403 82280403 G A TSPAN14 3'UTR 0.21 TCGA-06-5416-01 10 82280777 82280777 G A TSPAN14 3'UTR 0.31 TCGA-06-5416-01 10 82363528 82363528 G A SH2D4B Silent p.P279P 0.29 TCGA-06-5416-01 10 83635397 83635397 G A NRG3 Missense_Mutation p.D101N 0.23 deleterious(0.02) possibly_damaging(0.536) TCGA-06-5416-01 10 83635447 83635447 G T NRG3 Missense_Mutation p.K117N 0.17 deleterious(0.03) probably_damaging(0.994) TCGA-06-5416-01 10 84711289 84711289 C T NRG3 Silent p.I373I 0.19 TCGA-06-5416-01 10 85955278 85955278 C T CDHR1 Silent p.F28F 0.17 TCGA-06-5416-01 10 85972019 85972019 C T CDHR1 Silent p.F546F 0.20 TCGA-06-5416-01 10 85992269 85992269 C T LRIT1 Missense_Mutation p.R429Q 0.18 tolerated(0.45) benign(0.002) TCGA-06-5416-01 10 85993872 85993872 C T LRIT1 Silent p.E284E 0.17 TCGA-06-5416-01 10 86017674 86017674 C T RGR Missense_Mutation p.T223M 0.15 tolerated(0.1) benign(0.202) TCGA-06-5416-01 10 86017712 86017712 C A RGR Missense_Mutation p.L236I 0.47 tolerated(0.36) benign(0.012) TCGA-06-5416-01 10 86133608 86133608 T G CCSER2 Intron 0.29 TCGA-06-5416-01 10 86230164 86230164 G A CCSER2 Missense_Mutation p.D729N 0.26 deleterious(0.04) benign(0.002) TCGA-06-5416-01 10 863788 863788 C T LARP4B Silent p.S524S 0.39 TCGA-06-5416-01 10 87406902 87406902 C A GRID1 Intron 0.48 TCGA-06-5416-01 10 87407006 87407006 C T GRID1 Missense_Mutation p.G716R 0.22 tolerated(0.06) benign(0.323) TCGA-06-5416-01 10 87407174 87407174 C T GRID1 Intron 0.43 TCGA-06-5416-01 10 87489367 87489367 G A GRID1 Missense_Mutation p.A413V 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 10 87614273 87614273 A C GRID1 Missense_Mutation p.F405V 0.43 tolerated(0.28) probably_damaging(0.934) TCGA-06-5416-01 10 88197715 88197715 C A WAPAL Nonsense_Mutation p.E1157* 0.19 TCGA-06-5416-01 10 88469690 88469690 G A LDB3 Missense_Mutation p.V377M 0.15 tolerated(0.29) benign(0.023) TCGA-06-5416-01 10 88485953 88485953 G A LDB3 Missense_Mutation p.D685N 0.17 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 10 88635671 88635671 G A BMPR1A 5'UTR 0.54 TCGA-06-5416-01 10 88649819 88649819 G A BMPR1A Missense_Mutation p.G23E 0.39 deleterious_low_confidence(0) possibly_damaging(0.642) TCGA-06-5416-01 10 88659802 88659802 G A BMPR1A Missense_Mutation p.S150N 0.20 tolerated(0.19) benign(0.003) TCGA-06-5416-01 10 88769108 88769108 T C RP11-96C23.10 3'Flank 0.23 TCGA-06-5416-01 10 88769449 88769449 C T RP11-96C23.10 3'Flank 0.38 TCGA-06-5416-01 10 88911577 88911577 C A FAM35A Missense_Mutation p.P156T 0.46 tolerated(0.1) benign(0.007) TCGA-06-5416-01 10 89117960 89117960 A C NUTM2D 5'UTR 0.11 TCGA-06-5416-01 10 89120774 89120774 G A NUTM2D Missense_Mutation p.G235R 0.54 tolerated(1) benign(0.123) TCGA-06-5416-01 10 89127119 89127119 A G NUTM2D Missense_Mutation p.D555G 0.11 deleterious_low_confidence(0) benign(0.293) TCGA-06-5416-01 10 89268224 89268224 G T MINPP1 Nonsense_Mutation p.E257* 0.18 TCGA-06-5416-01 10 89472857 89472857 G A PAPSS2 Silent p.T57T 0.18 TCGA-06-5416-01 10 89514518 89514518 G A ATAD1 Missense_Mutation p.R338W 0.44 deleterious(0.04) possibly_damaging(0.462) TCGA-06-5416-01 10 89725321 89725321 T C PTEN 3'UTR 0.33 TCGA-06-5416-01 10 90499756 90499756 C T LIPK Missense_Mutation p.R274C 0.40 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 10 90697848 90697848 C A ACTA2 Silent p.T320T 0.20 TCGA-06-5416-01 10 90701568 90701568 G A ACTA2 Missense_Mutation p.S143F 0.11 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-06-5416-01 10 90733126 90733126 G A ACTA2 Intron 0.47 TCGA-06-5416-01 10 909749 909749 C T LARP4B Missense_Mutation p.A122T 0.24 tolerated(0.82) benign(0.001) TCGA-06-5416-01 10 909820 909820 G A LARP4B Missense_Mutation p.S98L 0.41 tolerated(0.9) benign(0) TCGA-06-5416-01 10 91098527 91098527 T G IFIT3 Missense_Mutation p.C39G 0.40 tolerated(0.45) benign(0.01) TCGA-06-5416-01 10 91143693 91143693 G A IFIT1B Missense_Mutation p.R208Q 0.20 tolerated(0.44) benign(0.014) TCGA-06-5416-01 10 91163477 91163477 G A IFIT1 3'UTR 0.20 TCGA-06-5416-01 10 91177038 91177038 G T IFIT5 Missense_Mutation p.D28Y 0.41 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 10 91192969 91192969 T G SLC16A12 Missense_Mutation p.K468T 0.05 tolerated(0.2) benign(0.035) TCGA-06-5416-01 10 91198364 91198364 C A SLC16A12 Missense_Mutation p.R342I 0.35 deleterious(0.03) probably_damaging(0.952) TCGA-06-5416-01 10 91222261 91222261 T G SLC16A12 Missense_Mutation p.E25D 0.25 tolerated_low_confidence(0.43) benign(0.008) TCGA-06-5416-01 10 91469788 91469788 G A KIF20B Silent p.G152G 0.22 TCGA-06-5416-01 10 91479222 91479222 G T KIF20B Missense_Mutation p.G494V 0.40 tolerated(0.15) probably_damaging(1) TCGA-06-5416-01 10 91483696 91483696 G T KIF20B Intron 0.35 TCGA-06-5416-01 10 91484797 91484797 G A KIF20B Missense_Mutation p.R628Q 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 10 91497458 91497458 A C KIF20B Missense_Mutation p.N914H 0.42 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 10 91497750 91497750 A G KIF20B Missense_Mutation p.N1011S 0.47 tolerated(1) benign(0.002) TCGA-06-5416-01 10 92635828 92635828 C A RPP30 Silent p.V81V 0.40 TCGA-06-5416-01 10 93389796 93389796 G T PPP1R3C Missense_Mutation p.S281Y 0.45 deleterious(0.04) benign(0.139) TCGA-06-5416-01 10 93576901 93576901 G A TNKS2 Silent p.Q145Q 0.41 TCGA-06-5416-01 10 93600321 93600321 C A TNKS2 Missense_Mutation p.L511M 0.41 deleterious(0.03) probably_damaging(0.995) TCGA-06-5416-01 10 93614816 93614816 C A TNKS2 Missense_Mutation p.S949Y 0.42 tolerated(0.68) benign(0.135) TCGA-06-5416-01 10 93617236 93617236 G T TNKS2 Nonsense_Mutation p.E1015* 0.20 TCGA-06-5416-01 10 93667974 93667974 G T FGFBP3 Missense_Mutation p.F251L 0.18 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 10 93702190 93702190 G A BTAF1 Missense_Mutation p.E89K 0.46 tolerated(0.31) benign(0.022) TCGA-06-5416-01 10 93722416 93722416 T C BTAF1 Missense_Mutation p.V462A 0.23 tolerated(0.35) possibly_damaging(0.566) TCGA-06-5416-01 10 93744129 93744129 A G BTAF1 Missense_Mutation p.N799D 0.20 tolerated(0.46) benign(0.01) TCGA-06-5416-01 10 94239046 94239046 G T IDE Silent p.I624I 0.21 TCGA-06-5416-01 10 94388621 94388621 A T KIF11 Missense_Mutation p.K425I 0.49 deleterious(0) possibly_damaging(0.861) TCGA-06-5416-01 10 94452130 94452130 C T HHEX Missense_Mutation p.P123S 0.36 tolerated(0.07) possibly_damaging(0.82) TCGA-06-5416-01 10 94452480 94452480 C T HHEX Nonsense_Mutation p.R188* 0.51 TCGA-06-5416-01 10 94645 94645 C T TUBB8 Missense_Mutation p.A63T 0.20 deleterious_low_confidence(0.04) benign(0.395) TCGA-06-5416-01 10 94669272 94669272 G T EXOC6 Nonsense_Mutation p.E183* 0.05 TCGA-06-5416-01 10 94714403 94714403 G A EXOC6 Missense_Mutation p.D515N 0.22 deleterious(0.01) possibly_damaging(0.863) TCGA-06-5416-01 10 94822752 94822752 G A CYP26C1 Silent p.K235K 0.47 TCGA-06-5416-01 10 95070325 95070325 C T MYOF Missense_Mutation p.E1989K 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 10 95072915 95072915 C T MYOF Silent p.E1917E 0.20 TCGA-06-5416-01 10 95079640 95079640 C T MYOF Missense_Mutation p.V1863I 0.42 tolerated(0.47) benign(0.03) TCGA-06-5416-01 10 95088580 95088580 G T MYOF Missense_Mutation p.L1691I 0.21 tolerated(0.16) benign(0.002) TCGA-06-5416-01 10 95103648 95103648 C T MYOF Missense_Mutation p.E1431K 0.47 deleterious(0.03) benign(0.21) TCGA-06-5416-01 10 95107537 95107537 G T MYOF Missense_Mutation p.F1362L 0.40 tolerated(0.69) benign(0.001) TCGA-06-5416-01 10 95116496 95116496 C A MYOF Missense_Mutation p.R1077M 0.41 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 10 95123744 95123744 G A MYOF Missense_Mutation p.P948S 0.41 tolerated(0.48) benign(0.001) TCGA-06-5416-01 10 95169361 95169361 C T MYOF Missense_Mutation p.R190Q 0.24 tolerated(0.07) benign(0.087) TCGA-06-5416-01 10 95242005 95242005 C T MYOF 5'Flank 0.33 TCGA-06-5416-01 10 95276727 95276727 G A CEP55 Missense_Mutation p.D239N 0.37 tolerated(0.08) benign(0) TCGA-06-5416-01 10 95360175 95360175 G A RBP4 Silent p.G110G 0.25 TCGA-06-5416-01 10 95459796 95459796 C A FRA10AC1 Missense_Mutation p.R23M 0.23 deleterious(0.02) benign(0.195) TCGA-06-5416-01 10 95557554 95557554 C T LGI1 Silent p.S556S 0.39 TCGA-06-5416-01 10 95658382 95658382 C A SLC35G1 Missense_Mutation p.S78Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 10 95721226 95721226 G A PIPSL RNA 0.43 TCGA-06-5416-01 10 95791081 95791081 A G PLCE1 Missense_Mutation p.K93R 0.16 tolerated_low_confidence(0.57) benign(0.002) TCGA-06-5416-01 10 96028705 96028705 G A PLCE1 Missense_Mutation p.R1434Q 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 96039752 96039752 C T PLCE1 Intron 0.21 TCGA-06-5416-01 10 96068384 96068384 G T PLCE1 Missense_Mutation p.E1977D 0.16 tolerated(0.18) probably_damaging(0.97) TCGA-06-5416-01 10 96084699 96084699 G T PLCE1 Missense_Mutation p.K2257N 0.22 deleterious(0.01) possibly_damaging(0.881) TCGA-06-5416-01 10 96109916 96109916 T G NOC3L Missense_Mutation p.N361T 0.25 deleterious(0) possibly_damaging(0.721) TCGA-06-5416-01 10 96333776 96333776 G A HELLS Silent p.S179S 0.43 TCGA-06-5416-01 10 96448020 96448020 G T CYP2C18 Missense_Mutation p.R157I 0.36 deleterious(0) probably_damaging(0.929) TCGA-06-5416-01 10 96466607 96466607 T G CYP2C18 Missense_Mutation p.F237V 0.19 tolerated(0.74) benign(0.004) TCGA-06-5416-01 10 96745815 96745815 C A CYP2C9 Missense_Mutation p.T392N 0.20 tolerated(0.07) benign(0.123) TCGA-06-5416-01 10 96824600 96824600 C A CYP2C8 Missense_Mutation p.R200I 0.39 tolerated(0.41) benign(0.001) TCGA-06-5416-01 10 97031415 97031415 C T PDLIM1 Missense_Mutation p.D75N 0.23 tolerated(0.15) benign(0.25) TCGA-06-5416-01 10 97096704 97096704 G T SORBS1 Silent p.S1071S 0.48 TCGA-06-5416-01 10 97114694 97114694 G A SORBS1 Missense_Mutation p.A720V 0.41 tolerated_low_confidence(0.69) benign(0.014) TCGA-06-5416-01 10 97117482 97117482 C T SORBS1 Silent p.E678E 0.46 TCGA-06-5416-01 10 97174284 97174284 C A SORBS1 Silent p.S259S 0.19 TCGA-06-5416-01 10 97373755 97373755 G T ALDH18A1 Missense_Mutation p.S590Y 0.44 deleterious(0) benign(0.134) TCGA-06-5416-01 10 97607210 97607210 G T ENTPD1 Missense_Mutation p.S286I 0.36 tolerated(0.06) benign(0.369) TCGA-06-5416-01 10 97607325 97607325 G A ENTPD1 Silent p.Q324Q 0.48 TCGA-06-5416-01 10 97759915 97759915 A G CC2D2B 5'UTR 0.22 TCGA-06-5416-01 10 97773567 97773567 C A CC2D2B Missense_Mutation p.S114Y 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 97779165 97779165 C A CC2D2B Intron 0.21 TCGA-06-5416-01 10 97919359 97919359 C A ZNF518A RNA 0.19 TCGA-06-5416-01 10 98002535 98002535 T G BLNK Missense_Mutation p.K40T 0.49 tolerated(0.11) possibly_damaging(0.878) TCGA-06-5416-01 10 98031245 98031245 C A BLNK 5'UTR 0.48 TCGA-06-5416-01 10 98127842 98127842 G T TLL2 3'UTR 0.18 TCGA-06-5416-01 10 98173072 98173072 C A TLL2 Nonsense_Mutation p.G309* 0.20 TCGA-06-5416-01 10 98180756 98180756 C T TLL2 Missense_Mutation p.D294N 0.44 deleterious(0.01) probably_damaging(0.964) TCGA-06-5416-01 10 98182396 98182396 C T TLL2 Missense_Mutation p.E243K 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-06-5416-01 10 98380135 98380135 G A PIK3AP1 Nonsense_Mutation p.R639* 0.22 TCGA-06-5416-01 10 98416631 98416631 G A PIK3AP1 Missense_Mutation p.S164L 0.28 tolerated(0.13) benign(0.015) TCGA-06-5416-01 10 98743883 98743883 T G C10orf12 Silent p.P912P 0.22 TCGA-06-5416-01 10 98743910 98743910 G T C10orf12 Missense_Mutation p.Q921H 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 10 98744892 98744892 T G C10orf12 3'UTR 0.20 TCGA-06-5416-01 10 98762523 98762523 G A SLIT1 Silent p.C1364C 0.49 TCGA-06-5416-01 10 98819251 98819251 C T SLIT1 Missense_Mutation p.D351N 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 10 99141485 99141485 G A RRP12 Missense_Mutation p.T436M 0.42 deleterious(0) benign(0.007) TCGA-06-5416-01 10 99212173 99212173 G A ZDHHC16 Missense_Mutation p.G147D 0.22 tolerated(0.63) benign(0.004) TCGA-06-5416-01 10 99219956 99219956 G T MMS19 Missense_Mutation p.P835T 0.43 tolerated(0.16) benign(0.01) TCGA-06-5416-01 10 99229895 99229895 T C MMS19 Silent p.L279L 0.48 TCGA-06-5416-01 10 99344350 99344350 G T PI4K2A 5'UTR 0.26 TCGA-06-5416-01 10 99361720 99361720 G T HOGA1 Missense_Mutation p.Q269H 0.48 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 10 99424719 99424719 G T PI4K2A Missense_Mutation p.K324N 0.17 deleterious(0) possibly_damaging(0.861) TCGA-06-5416-01 10 99527378 99527378 G A SFRP5 Missense_Mutation p.R283C 0.15 deleterious(0) possibly_damaging(0.892) TCGA-06-5416-01 10 99677352 99677352 G A CRTAC1 Missense_Mutation p.A207V 0.33 tolerated(0.17) benign(0.017) TCGA-06-5416-01 10 99695982 99695982 G A CRTAC1 Silent p.I122I 0.15 TCGA-06-5416-01 10 99991416 99991416 G T R3HCC1L Missense_Mutation p.D645Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 100226884 100226884 C T CNTN5 Missense_Mutation p.S1079F 0.48 tolerated(0.72) benign(0.013) TCGA-06-5416-01 11 101323694 101323694 T C TRPC6 Missense_Mutation p.N930D 0.05 tolerated_low_confidence(0.23) benign(0.07) TCGA-06-5416-01 11 101343032 101343032 C T TRPC6 Missense_Mutation p.A681T 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 1016261 1016261 G T MUC6 Missense_Mutation p.H2180Q 0.14 benign(0.001) TCGA-06-5416-01 11 1016406 1016406 G T MUC6 Missense_Mutation p.S2132Y 0.22 benign(0.153) TCGA-06-5416-01 11 1016417 1016417 G T MUC6 Silent p.S2128S 0.28 TCGA-06-5416-01 11 101762047 101762047 A G ANGPTL5 Missense_Mutation p.M377T 0.46 deleterious(0) possibly_damaging(0.745) TCGA-06-5416-01 11 101765653 101765653 C T ANGPTL5 Silent p.T268T 0.20 TCGA-06-5416-01 11 1017927 1017927 G A MUC6 Missense_Mutation p.T1625I 0.04 unknown(0) TCGA-06-5416-01 11 101793481 101793481 C T KIAA1377 Missense_Mutation p.R80W 0.35 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 101833252 101833252 G T KIAA1377 Nonsense_Mutation p.E496* 0.35 TCGA-06-5416-01 11 101834290 101834290 C T KIAA1377 Missense_Mutation p.H842Y 0.18 tolerated(0.56) benign(0.006) TCGA-06-5416-01 11 101929663 101929663 C A C11orf70 Missense_Mutation p.S82Y 0.12 tolerated(0.07) benign(0.391) TCGA-06-5416-01 11 101953926 101953926 C A C11orf70 Missense_Mutation p.S267Y 0.21 deleterious_low_confidence(0) probably_damaging(0.912) TCGA-06-5416-01 11 102196083 102196083 T G BIRC3 Missense_Mutation p.F281L 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 102207853 102207853 C A BIRC3 3'UTR 0.15 TCGA-06-5416-01 11 102248819 102248819 C A BIRC2 Missense_Mutation p.H588N 0.48 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 102272395 102272395 C A TMEM123 Missense_Mutation p.K159N 0.22 tolerated(1) possibly_damaging(0.607) TCGA-06-5416-01 11 102398681 102398681 C T MMP7 Missense_Mutation p.E48K 0.42 tolerated(1) benign(0.001) TCGA-06-5416-01 11 1025025 1025025 G A MUC6 Missense_Mutation p.T1015M 0.16 unknown(0) TCGA-06-5416-01 11 102589181 102589181 G A MMP8 Missense_Mutation p.P250S 0.25 tolerated(1) benign(0.307) TCGA-06-5416-01 11 102650410 102650410 G T MMP10 Missense_Mutation p.L58I 0.28 tolerated(0.27) benign(0.158) TCGA-06-5416-01 11 102736612 102736612 C T MMP12 RNA 0.48 TCGA-06-5416-01 11 102736667 102736667 C A MMP12 Splice_Site 0.31 TCGA-06-5416-01 11 102743673 102743673 C T MMP12 RNA 0.46 TCGA-06-5416-01 11 102822877 102822877 C T MMP13 Silent p.A221A 0.20 TCGA-06-5416-01 11 103022883 103022883 G A DYNC2H1 Missense_Mutation p.E989K 0.31 benign(0.001) TCGA-06-5416-01 11 103175388 103175388 G A DYNC2H1 Missense_Mutation p.G3781E 0.07 probably_damaging(0.995) TCGA-06-5416-01 11 103191850 103191850 C A DYNC2H1 Missense_Mutation p.L3947I 0.50 probably_damaging(0.992) TCGA-06-5416-01 11 10327384 10327384 G A ADM Intron 0.20 TCGA-06-5416-01 11 103866887 103866887 C A PDGFD Missense_Mutation p.R139M 0.47 tolerated(0.07) probably_damaging(1) TCGA-06-5416-01 11 104869611 104869611 C T CASP5 Splice_Site p.X379_splice 0.20 TCGA-06-5416-01 11 104897672 104897672 A G CASP1 Missense_Mutation p.V338A 0.46 deleterious(0) benign(0.423) TCGA-06-5416-01 11 104899923 104899923 C A CASP1 Nonsense_Mutation p.E312* 0.27 TCGA-06-5416-01 11 104904959 104904959 C T CASP1 Missense_Mutation p.A84T 0.48 tolerated(0.11) probably_damaging(0.948) TCGA-06-5416-01 11 10508799 10508799 G A AMPD3 Missense_Mutation p.R285Q 0.23 deleterious(0) benign(0.362) TCGA-06-5416-01 11 105769100 105769100 C T GRIA4 Missense_Mutation p.R278C 0.18 deleterious(0.01) probably_damaging(0.938) TCGA-06-5416-01 11 105781234 105781234 C T GRIA4 Missense_Mutation p.A411V 0.31 tolerated(0.5) benign(0.02) TCGA-06-5416-01 11 105880168 105880168 G T MSANTD4 3'UTR 0.35 TCGA-06-5416-01 11 105924442 105924442 G A KBTBD3 Missense_Mutation p.P325L 0.18 deleterious(0) benign(0.165) TCGA-06-5416-01 11 105929796 105929796 G T KBTBD3 Missense_Mutation p.A10D 0.21 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 11 105962057 105962057 C T AASDHPPT Silent p.S182S 0.19 TCGA-06-5416-01 11 105967656 105967656 G T AASDHPPT 3'UTR 0.23 TCGA-06-5416-01 11 10615739 10615739 T C MRVI1 Missense_Mutation p.D674G 0.38 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 11 10647689 10647689 C T MRVI1 Missense_Mutation p.G398S 0.29 tolerated(1) benign(0.093) TCGA-06-5416-01 11 10647820 10647820 C T MRVI1 Missense_Mutation p.G354E 0.19 tolerated_low_confidence(0.05) benign(0.386) TCGA-06-5416-01 11 10651173 10651173 C T MRVI1 Silent p.A162A 0.18 TCGA-06-5416-01 11 106680958 106680958 C A GUCY1A2 Nonsense_Mutation p.E485* 0.24 TCGA-06-5416-01 11 107299966 107299966 T G CWF19L2 Missense_Mutation p.K331T 0.21 tolerated(0.1) benign(0.001) TCGA-06-5416-01 11 107299982 107299982 T G CWF19L2 Missense_Mutation p.N326H 0.23 tolerated(0.17) benign(0.003) TCGA-06-5416-01 11 107309843 107309843 C A CWF19L2 Missense_Mutation p.D213Y 0.12 deleterious(0.01) possibly_damaging(0.594) TCGA-06-5416-01 11 107526749 107526749 C T ELMOD1 Silent p.I263I 0.47 TCGA-06-5416-01 11 107578636 107578636 C T SLN Silent p.E7E 0.15 TCGA-06-5416-01 11 107663222 107663222 G T SLC35F2 3'UTR 0.23 TCGA-06-5416-01 11 10781785 10781785 G A CTR9 Missense_Mutation p.A220T 0.23 deleterious(0.02) benign(0.03) TCGA-06-5416-01 11 107832962 107832962 G T RAB39A Missense_Mutation p.R173I 0.16 deleterious(0.01) benign(0.392) TCGA-06-5416-01 11 107832991 107832991 G T RAB39A Nonsense_Mutation p.E183* 0.17 TCGA-06-5416-01 11 107920786 107920786 T C CUL5 Missense_Mutation p.V135A 0.24 deleterious(0.02) possibly_damaging(0.769) TCGA-06-5416-01 11 107925401 107925401 A C CUL5 Missense_Mutation p.K194T 0.41 deleterious(0.04) possibly_damaging(0.676) TCGA-06-5416-01 11 108032677 108032677 G A NPAT Missense_Mutation p.P1046S 0.42 tolerated(0.18) benign(0.032) TCGA-06-5416-01 11 108043500 108043500 G A NPAT Silent p.I737I 0.23 TCGA-06-5416-01 11 108044374 108044374 G A NPAT Missense_Mutation p.S446F 0.46 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 11 108046993 108046993 G T NPAT Missense_Mutation p.S371Y 0.40 deleterious(0.04) benign(0.234) TCGA-06-5416-01 11 108121667 108121667 T G ATM Missense_Mutation p.F492C 0.39 deleterious(0.01) benign(0.375) TCGA-06-5416-01 11 108139248 108139248 C T ATM Missense_Mutation p.S917F 0.46 tolerated(0.06) possibly_damaging(0.635) TCGA-06-5416-01 11 108159742 108159742 C T ATM Missense_Mutation p.S1383L 0.38 deleterious(0) benign(0.11) TCGA-06-5416-01 11 108163509 108163509 G A ATM Missense_Mutation p.V1534I 0.19 tolerated(0.81) benign(0.002) TCGA-06-5416-01 11 10819288 10819288 C T EIF4G2 3'UTR 0.23 TCGA-06-5416-01 11 108218039 108218039 T C ATM Missense_Mutation p.V2873A 0.45 deleterious(0) benign(0.264) TCGA-06-5416-01 11 108218071 108218071 G T ATM Nonsense_Mutation p.E2884* 0.42 TCGA-06-5416-01 11 10822064 10822064 C A EIF4G2 Missense_Mutation p.R592I 0.21 deleterious(0) benign(0.356) TCGA-06-5416-01 11 10824772 10824772 G A EIF4G2 Missense_Mutation p.R295C 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 108253770 108253770 G T C11orf65 Missense_Mutation p.P307H 0.34 tolerated_low_confidence(0.06) benign(0.099) TCGA-06-5416-01 11 108253840 108253840 G A C11orf65 Nonsense_Mutation p.Q284* 0.37 TCGA-06-5416-01 11 108351961 108351961 C A KDELC2 Missense_Mutation p.E348D 0.19 tolerated(1) benign(0.162) TCGA-06-5416-01 11 108381092 108381092 C T EXPH5 Silent p.E1714E 0.19 TCGA-06-5416-01 11 108381226 108381226 C T EXPH5 Missense_Mutation p.E1670K 0.22 tolerated(0.06) possibly_damaging(0.9) TCGA-06-5416-01 11 108381410 108381410 T A EXPH5 Missense_Mutation p.K1608N 0.21 deleterious(0.02) benign(0.055) TCGA-06-5416-01 11 108381992 108381992 T C EXPH5 Silent p.Q1414Q 0.18 TCGA-06-5416-01 11 108382360 108382360 C T EXPH5 Missense_Mutation p.A1292T 0.39 tolerated(0.21) benign(0.197) TCGA-06-5416-01 11 108382941 108382941 C A EXPH5 Missense_Mutation p.R1098I 0.23 tolerated(0.21) possibly_damaging(0.566) TCGA-06-5416-01 11 108383875 108383875 C T EXPH5 Missense_Mutation p.D787N 0.20 tolerated(0.12) benign(0.015) TCGA-06-5416-01 11 108384807 108384807 C A EXPH5 Missense_Mutation p.G476V 0.22 tolerated(0.1) possibly_damaging(0.791) TCGA-06-5416-01 11 108409878 108409878 C T EXPH5 Missense_Mutation p.V106I 0.41 tolerated(0.5) benign(0.001) TCGA-06-5416-01 11 1084834 1084834 G A MUC2 Missense_Mutation p.D877N 0.50 possibly_damaging(0.733) TCGA-06-5416-01 11 108535930 108535930 T C DDX10 Missense_Mutation p.V17A 0.42 deleterious_low_confidence(0.01) probably_damaging(0.938) TCGA-06-5416-01 11 108562753 108562753 G A DDX10 Missense_Mutation p.A376T 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 108788777 108788777 C T DDX10 Intron 0.09 TCGA-06-5416-01 11 1090811 1090811 G A MUC2 Missense_Mutation p.A1236T 0.44 benign(0.144) TCGA-06-5416-01 11 1092286 1092286 G T MUC2 Missense_Mutation p.D1369Y 0.19 probably_damaging(0.997) TCGA-06-5416-01 11 1093901 1093901 C T MUC2 Missense_Mutation p.S1907F 0.20 unknown(0) TCGA-06-5416-01 11 1094803 1094803 G T MUC2 Missense_Mutation p.R1964M 0.34 unknown(0) TCGA-06-5416-01 11 1096519 1096519 G A MUC2 Missense_Mutation p.E2182K 0.22 unknown(0) TCGA-06-5416-01 11 1099487 1099487 C G MUC2 Missense_Mutation p.A2443G 0.36 unknown(0) TCGA-06-5416-01 11 1103223 1103223 G A MUC2 Missense_Mutation p.C2658Y 0.41 unknown(0) TCGA-06-5416-01 11 110450332 110450332 G T ARHGAP20 Missense_Mutation p.S1113Y 0.20 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 11 110451546 110451546 G A ARHGAP20 Silent p.I708I 0.47 TCGA-06-5416-01 11 111224871 111224871 C T POU2AF1 3'UTR 0.21 TCGA-06-5416-01 11 111225243 111225243 C T POU2AF1 Missense_Mutation p.A172T 0.54 tolerated(0.07) benign(0.039) TCGA-06-5416-01 11 111250010 111250010 C A POU2AF1 5'UTR 0.47 TCGA-06-5416-01 11 111369417 111369417 C A BTG4 Missense_Mutation p.D29Y 0.27 deleterious(0.04) possibly_damaging(0.905) TCGA-06-5416-01 11 111385553 111385553 C T C11orf88 Missense_Mutation p.S15F 0.16 deleterious(0.01) benign(0.312) TCGA-06-5416-01 11 111612203 111612203 C T PPP2R1B Intron 0.47 TCGA-06-5416-01 11 111613257 111613257 G T PPP2R1B Missense_Mutation p.L563I 0.39 tolerated(0.11) benign(0.058) TCGA-06-5416-01 11 111709035 111709035 C T ALG9 Missense_Mutation p.A250T 0.43 tolerated(0.11) probably_damaging(0.997) TCGA-06-5416-01 11 111709045 111709045 C T ALG9 Silent p.S246S 0.17 TCGA-06-5416-01 11 111747296 111747296 C T FDXACB1 Missense_Mutation p.E201K 0.40 tolerated(0.82) benign(0.004) TCGA-06-5416-01 11 111754689 111754689 C A C11orf1 3'UTR 0.74 TCGA-06-5416-01 11 111779547 111779547 G A CRYAB Missense_Mutation p.R157C 0.24 deleterious(0.02) benign(0.381) TCGA-06-5416-01 11 111908113 111908113 G A DLAT Missense_Mutation p.A302T 0.48 deleterious(0.03) possibly_damaging(0.778) TCGA-06-5416-01 11 111933403 111933403 G A DLAT 3'UTR 0.33 TCGA-06-5416-01 11 111941233 111941233 G T PIH1D2 Missense_Mutation p.P247H 0.43 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 11 112064271 112064271 G A BCO2 Missense_Mutation p.S123N 0.15 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 11 112088714 112088714 G A BCO2 3'UTR 0.69 TCGA-06-5416-01 11 113075151 113075151 G A NCAM1 Missense_Mutation p.A150T 0.36 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 11 113076817 113076817 A C NCAM1 Missense_Mutation p.K240N 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 113126622 113126622 G A NCAM1 Missense_Mutation p.E667K 0.39 deleterious(0.02) possibly_damaging(0.686) TCGA-06-5416-01 11 113237036 113237036 T G TTC12 3'UTR 0.20 TCGA-06-5416-01 11 113264381 113264381 C T ANKK1 Missense_Mutation p.R122C 0.45 tolerated(0.14) benign(0.029) TCGA-06-5416-01 11 113265707 113265707 C T ANKK1 Silent p.I179I 0.41 TCGA-06-5416-01 11 113270282 113270282 C A ANKK1 Missense_Mutation p.L531M 0.40 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 113283589 113283589 G A DRD2 Missense_Mutation p.A276V 0.41 tolerated(0.46) benign(0.004) TCGA-06-5416-01 11 113295155 113295155 G A DRD2 Silent p.I73I 0.27 TCGA-06-5416-01 11 113295510 113295510 G A DRD2 Intron 0.22 TCGA-06-5416-01 11 113614602 113614602 C T ZW10 Missense_Mutation p.R478H 0.40 deleterious(0.03) benign(0.114) TCGA-06-5416-01 11 113651015 113651015 C T CLDN25 Silent p.L166L 0.23 TCGA-06-5416-01 11 113675444 113675444 G A USP28 Missense_Mutation p.A870V 0.44 deleterious(0) possibly_damaging(0.852) TCGA-06-5416-01 11 11374049 11374049 A G CSNK2A3 Silent p.Y206Y 0.21 TCGA-06-5416-01 11 113856763 113856763 C T HTR3A Missense_Mutation p.R197C 0.44 deleterious(0) benign(0.427) TCGA-06-5416-01 11 113860289 113860289 C T HTR3A Missense_Mutation p.A452V 0.43 tolerated(0.31) benign(0.064) TCGA-06-5416-01 11 114278465 114278465 G A RBM7 Missense_Mutation p.S246N 0.18 tolerated(0.14) benign(0.025) TCGA-06-5416-01 11 114278480 114278480 A C RBM7 Missense_Mutation p.N251T 0.41 tolerated(0.19) benign(0.146) TCGA-06-5416-01 11 114453515 114453515 C T NXPE4 Missense_Mutation p.D109N 0.43 deleterious(0.05) possibly_damaging(0.624) TCGA-06-5416-01 11 11454168 11454168 C T GALNT18 Missense_Mutation p.E199K 0.25 tolerated(0.69) benign(0.041) TCGA-06-5416-01 11 114569060 114569060 G A NXPE2 Silent p.R142R 0.14 TCGA-06-5416-01 11 115085448 115085448 C T CADM1 Missense_Mutation p.V292I 0.24 tolerated(0.52) benign(0.183) TCGA-06-5416-01 11 116619273 116619273 C A BUD13 Missense_Mutation p.Q595H 0.42 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 11 116629868 116629868 T A BUD13 Missense_Mutation p.T428S 0.49 tolerated(0.1) benign(0.15) TCGA-06-5416-01 11 116692347 116692347 G A APOA4 Missense_Mutation p.R143C 0.20 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 11 116703513 116703513 A C APOC3 Missense_Mutation p.K71N 0.48 deleterious(0.01) probably_damaging(0.971) TCGA-06-5416-01 11 116728561 116728561 G T SIK3 Missense_Mutation p.T1101N 0.20 tolerated_low_confidence(0.09) benign(0.102) TCGA-06-5416-01 11 117038446 117038446 G A PAFAH1B2 3'UTR 0.39 TCGA-06-5416-01 11 117054796 117054796 C A SIDT2 Missense_Mutation p.P270Q 0.30 tolerated(0.58) possibly_damaging(0.847) TCGA-06-5416-01 11 117073860 117073860 G A TAGLN Missense_Mutation p.R44H 0.42 tolerated(0.44) benign(0.005) TCGA-06-5416-01 11 117079636 117079636 G A PCSK7 Silent p.I556I 0.13 TCGA-06-5416-01 11 117109655 117109655 G A RNF214 Missense_Mutation p.C149Y 0.21 deleterious_low_confidence(0.01) benign(0.085) TCGA-06-5416-01 11 117152952 117152952 G A RNF214 Missense_Mutation p.E560K 0.20 tolerated(0.06) benign(0.423) TCGA-06-5416-01 11 117153561 117153561 T G RNF214 Missense_Mutation p.S649A 0.19 tolerated(0.49) benign(0.006) TCGA-06-5416-01 11 117242054 117242054 G A CEP164 Missense_Mutation p.A342T 0.21 tolerated(0.14) benign(0.055) TCGA-06-5416-01 11 117282877 117282877 G A CEP164 Missense_Mutation p.R1459H 0.18 tolerated(1) benign(0.014) TCGA-06-5416-01 11 117306507 117306507 G A DSCAML1 Missense_Mutation p.P1637S 0.38 deleterious(0.05) possibly_damaging(0.897) TCGA-06-5416-01 11 117309654 117309654 G A DSCAML1 Missense_Mutation p.S1457L 0.49 deleterious(0) probably_damaging(0.915) TCGA-06-5416-01 11 117335712 117335712 G A DSCAML1 Missense_Mutation p.R1131W 0.24 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 11 117864750 117864750 C A IL10RA Missense_Mutation p.L192I 0.18 tolerated(0.12) benign(0.039) TCGA-06-5416-01 11 117864804 117864804 G A IL10RA Missense_Mutation p.A210T 0.52 tolerated(0.58) benign(0.001) TCGA-06-5416-01 11 117864811 117864811 G A IL10RA Missense_Mutation p.R212Q 0.29 tolerated(0.06) possibly_damaging(0.608) TCGA-06-5416-01 11 117973949 117973949 C T TMPRSS4 Silent p.P97P 0.38 TCGA-06-5416-01 11 117978572 117978572 G A TMPRSS4 Missense_Mutation p.R175H 0.44 tolerated(0.17) benign(0.001) TCGA-06-5416-01 11 118014713 118014713 G A SCN4B Missense_Mutation p.R100C 0.51 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 118047082 118047082 G T SCN2B Missense_Mutation p.S22Y 0.22 tolerated(0.92) benign(0.355) TCGA-06-5416-01 11 118065058 118065058 T G AMICA1 Missense_Mutation p.K389N 0.20 tolerated(0.15) benign(0.005) TCGA-06-5416-01 11 118104186 118104186 C T MPZL3 Missense_Mutation p.A224T 0.15 tolerated(0.37) possibly_damaging(0.787) TCGA-06-5416-01 11 118253482 118253482 G A UBE4A Missense_Mutation p.E737K 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 118343500 118343500 G A KMT2A Silent p.T542T 0.16 TCGA-06-5416-01 11 118343914 118343914 G A KMT2A Silent p.S680S 0.45 TCGA-06-5416-01 11 118352711 118352711 C A KMT2A Missense_Mutation p.P1306T 0.22 benign(0.445) TCGA-06-5416-01 11 118374472 118374472 G A KMT2A Missense_Mutation p.R2622H 0.28 probably_damaging(0.996) TCGA-06-5416-01 11 118377107 118377107 G A KMT2A Silent p.Q3500Q 0.20 TCGA-06-5416-01 11 118390700 118390700 C A KMT2A Missense_Mutation p.L3784M 0.47 probably_damaging(0.972) TCGA-06-5416-01 11 118425286 118425286 C T IFT46 Missense_Mutation p.G175E 0.19 tolerated(0.16) possibly_damaging(0.474) TCGA-06-5416-01 11 118468446 118468446 C T ARCN1 Silent p.I422I 0.51 TCGA-06-5416-01 11 118502033 118502033 T C PHLDB1 Missense_Mutation p.L646S 0.22 tolerated(0.21) benign(0.074) TCGA-06-5416-01 11 118521218 118521218 C T PHLDB1 Silent p.F1280F 0.24 TCGA-06-5416-01 11 118529432 118529432 C T TREH Missense_Mutation p.S519N 0.19 tolerated(0.3) benign(0.039) TCGA-06-5416-01 11 118850320 118850320 G T FOXR1 Missense_Mutation p.A185S 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 118851387 118851387 G A FOXR1 Missense_Mutation p.A267T 0.48 tolerated(0.18) benign(0.062) TCGA-06-5416-01 11 118881519 118881519 G T CCDC84 Missense_Mutation p.K143N 0.22 deleterious(0) possibly_damaging(0.56) TCGA-06-5416-01 11 118919245 118919245 C A HYOU1 Missense_Mutation p.E732D 0.26 tolerated(0.26) benign(0.021) TCGA-06-5416-01 11 118922151 118922151 G A HYOU1 Missense_Mutation p.R509W 0.47 deleterious(0.01) possibly_damaging(0.892) TCGA-06-5416-01 11 118922845 118922845 G A HYOU1 Missense_Mutation p.R388W 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 118923018 118923018 C T HYOU1 Missense_Mutation p.E371K 0.24 tolerated(0.47) benign(0.015) TCGA-06-5416-01 11 118926548 118926548 C A HYOU1 Silent p.L33L 0.22 TCGA-06-5416-01 11 118967841 118967841 C A DPAGT1 Intron 0.45 TCGA-06-5416-01 11 118971419 118971419 G T DPAGT1 Silent p.V139V 0.41 TCGA-06-5416-01 11 118980885 118980885 C T C2CD2L Silent p.C142C 0.45 TCGA-06-5416-01 11 118982054 118982054 C T C2CD2L Missense_Mutation p.R294W 0.44 deleterious(0) possibly_damaging(0.858) TCGA-06-5416-01 11 119001658 119001658 C T HINFP Silent p.H135H 0.18 TCGA-06-5416-01 11 119020886 119020886 C T ABCG4 Missense_Mutation p.R71W 0.22 tolerated(0.06) benign(0.035) TCGA-06-5416-01 11 119025096 119025096 C T ABCG4 Silent p.A161A 0.19 TCGA-06-5416-01 11 119030949 119030949 G T ABCG4 Missense_Mutation p.V484L 0.44 tolerated(0.29) benign(0.002) TCGA-06-5416-01 11 119050501 119050501 G A NLRX1 Missense_Mutation p.D591N 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 11 119050555 119050555 C T NLRX1 Missense_Mutation p.R609C 0.25 tolerated(0.15) benign(0.008) TCGA-06-5416-01 11 119148875 119148875 G T CBL Splice_Site p.X366_splice 0.33 TCGA-06-5416-01 11 119182351 119182351 C T MCAM Nonsense_Mutation p.W432* 0.21 TCGA-06-5416-01 11 119183291 119183291 T G MCAM Missense_Mutation p.E269D 0.13 tolerated(0.13) possibly_damaging(0.852) TCGA-06-5416-01 11 119216287 119216287 C A MFRP Missense_Mutation p.D162Y 0.15 tolerated(0.05) probably_damaging(1) TCGA-06-5416-01 11 119217046 119217046 C T MFRP Silent p.G31G 0.39 TCGA-06-5416-01 11 119227941 119227941 A G USP2 Silent p.C562C 0.39 TCGA-06-5416-01 11 119548525 119548525 C T PVRL1 Missense_Mutation p.R158Q 0.11 deleterious(0.04) benign(0.001) TCGA-06-5416-01 11 11971993 11971993 T C USP47 Missense_Mutation p.S1115P 0.19 tolerated(0.22) probably_damaging(0.935) TCGA-06-5416-01 11 120008704 120008704 C T TRIM29 Silent p.S12S 0.41 TCGA-06-5416-01 11 120099740 120099740 G A OAF Silent p.R237R 0.33 TCGA-06-5416-01 11 120099835 120099835 A T OAF Missense_Mutation p.D269V 0.13 deleterious_low_confidence(0) possibly_damaging(0.89) TCGA-06-5416-01 11 120111019 120111019 G T POU2F3 Intron 0.30 TCGA-06-5416-01 11 120139939 120139939 G T POU2F3 Missense_Mutation p.D42Y 0.41 deleterious(0.03) possibly_damaging(0.694) TCGA-06-5416-01 11 120170330 120170330 T C POU2F3 Intron 0.22 TCGA-06-5416-01 11 120176392 120176392 G A POU2F3 Missense_Mutation p.D225N 0.46 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 11 120673448 120673448 C A GRIK4 Silent p.L43L 0.20 TCGA-06-5416-01 11 120744852 120744852 C T GRIK4 Silent p.I328I 0.10 TCGA-06-5416-01 11 120831733 120831733 G A GRIK4 Missense_Mutation p.A664T 0.40 tolerated(0.14) benign(0.007) TCGA-06-5416-01 11 120989023 120989023 C A TECTA Missense_Mutation p.L267I 0.37 deleterious(0.05) benign(0.206) TCGA-06-5416-01 11 120998971 120998971 G A TECTA Missense_Mutation p.G762E 0.22 tolerated(0.2) benign(0.11) TCGA-06-5416-01 11 121000865 121000865 C T TECTA Silent p.S962S 0.21 TCGA-06-5416-01 11 121023759 121023759 C T TECTA Silent p.C1425C 0.51 TCGA-06-5416-01 11 121028754 121028754 C T TECTA Missense_Mutation p.R1504C 0.19 deleterious(0.01) probably_damaging(0.912) TCGA-06-5416-01 11 121028872 121028872 C A TECTA Nonsense_Mutation p.S1543* 0.19 TCGA-06-5416-01 11 121028895 121028895 G A TECTA Missense_Mutation p.E1551K 0.19 tolerated(0.14) benign(0.058) TCGA-06-5416-01 11 121032931 121032931 C T TECTA Silent p.L1708L 0.21 TCGA-06-5416-01 11 121037303 121037303 C T TECTA Silent p.I1800I 0.21 TCGA-06-5416-01 11 121175082 121175082 C T SC5D Nonsense_Mutation p.R75* 0.40 TCGA-06-5416-01 11 121177961 121177961 C T SC5D Missense_Mutation p.R214C 0.23 tolerated(0.18) probably_damaging(0.982) TCGA-06-5416-01 11 121391543 121391543 G T SORL1 Missense_Mutation p.E463D 0.39 tolerated(0.39) possibly_damaging(0.76) TCGA-06-5416-01 11 121461474 121461474 G A SORL1 Intron 0.50 TCGA-06-5416-01 11 121495965 121495965 C T SORL1 Silent p.L2115L 0.44 TCGA-06-5416-01 11 1218114 1218114 C T MUC5AC RNA 0.45 TCGA-06-5416-01 11 121986674 121986674 T C BLID 5'UTR 0.37 TCGA-06-5416-01 11 122678821 122678821 T C UBASH3B Silent p.C583C 0.22 TCGA-06-5416-01 11 122709265 122709265 G T CRTAM Missense_Mutation p.R4I 0.16 deleterious(0.01) benign(0.012) TCGA-06-5416-01 11 122738147 122738147 G T CRTAM Missense_Mutation p.R283I 0.18 deleterious(0) possibly_damaging(0.777) TCGA-06-5416-01 11 122742114 122742114 C T CRTAM 3'UTR 0.29 TCGA-06-5416-01 11 122756539 122756539 A C C11orf63 5'UTR 0.21 TCGA-06-5416-01 11 122756745 122756745 G A C11orf63 Missense_Mutation p.R63Q 0.21 tolerated(0.75) benign(0.004) TCGA-06-5416-01 11 122756771 122756771 G A C11orf63 Missense_Mutation p.D72N 0.41 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 11 122756799 122756799 G A C11orf63 Missense_Mutation p.R81Q 0.23 tolerated(0.54) benign(0.001) TCGA-06-5416-01 11 122756858 122756858 C T C11orf63 Missense_Mutation p.R101C 0.40 deleterious(0.04) benign(0) TCGA-06-5416-01 11 122795686 122795686 G T C11orf63 Missense_Mutation p.D316Y 0.21 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 11 122805176 122805176 G A C11orf63 Missense_Mutation p.V343I 0.21 tolerated(0.19) benign(0.311) TCGA-06-5416-01 11 122805575 122805575 G T C11orf63 Nonsense_Mutation p.E476* 0.18 TCGA-06-5416-01 11 122852174 122852174 G A BSX Missense_Mutation p.A69V 0.36 tolerated(0.19) benign(0.004) TCGA-06-5416-01 11 12315570 12315570 A C MICALCL Missense_Mutation p.I198L 0.19 tolerated(0.8) benign(0.002) TCGA-06-5416-01 11 123753811 123753811 G A TMEM225 3'UTR 0.14 TCGA-06-5416-01 11 123894047 123894047 G A OR10G9 Missense_Mutation p.E110K 0.22 deleterious(0) benign(0.112) TCGA-06-5416-01 11 123909171 123909171 C T OR10G7 Missense_Mutation p.A180T 0.05 deleterious(0) benign(0.103) TCGA-06-5416-01 11 124134893 124134893 G A OR8G5 Silent p.E57E 0.14 TCGA-06-5416-01 11 124179933 124179933 G A OR8D1 Missense_Mutation p.H244Y 0.45 deleterious(0) probably_damaging(0.927) TCGA-06-5416-01 11 124253243 124253243 T G OR8B2 5'UTR 0.19 TCGA-06-5416-01 11 124266444 124266444 C A OR8B3 Missense_Mutation p.E268D 0.18 tolerated_low_confidence(1) benign(0.006) TCGA-06-5416-01 11 124413081 124413081 G A OR8B12 Missense_Mutation p.A157V 0.16 tolerated_low_confidence(0.06) benign(0.042) TCGA-06-5416-01 11 124489731 124489731 A G PANX3 Missense_Mutation p.H360R 0.44 tolerated(0.25) possibly_damaging(0.554) TCGA-06-5416-01 11 124501279 124501279 C A TBRG1 Silent p.I352I 0.21 TCGA-06-5416-01 11 124509617 124509617 C T SIAE Silent p.S371S 0.44 TCGA-06-5416-01 11 124530643 124530643 C T SIAE Missense_Mutation p.E96K 0.43 tolerated(0.7) benign(0.002) TCGA-06-5416-01 11 124617489 124617489 C A VSIG2 Missense_Mutation p.R309I 0.48 deleterious(0) possibly_damaging(0.451) TCGA-06-5416-01 11 124624130 124624130 C A ESAM Missense_Mutation p.E279D 0.36 deleterious(0.04) possibly_damaging(0.523) TCGA-06-5416-01 11 124637350 124637350 C A MSANTD2 Nonsense_Mutation p.E416* 0.22 TCGA-06-5416-01 11 124670253 124670253 C A MSANTD2 Missense_Mutation p.E8D 0.27 tolerated_low_confidence(0.24) benign(0.017) TCGA-06-5416-01 11 124766179 124766179 C A ROBO4 Missense_Mutation p.E198D 0.51 tolerated(0.19) possibly_damaging(0.872) TCGA-06-5416-01 11 124951771 124951771 C T SLC37A2 Missense_Mutation p.A285V 0.18 deleterious(0.01) possibly_damaging(0.591) TCGA-06-5416-01 11 1253737 1253737 G A MUC5B Missense_Mutation p.R634H 0.31 unknown(0) TCGA-06-5416-01 11 125503192 125503192 G T CHEK1 Nonsense_Mutation p.E187* 0.25 TCGA-06-5416-01 11 125550797 125550797 G T ACRV1 5'UTR 0.22 TCGA-06-5416-01 11 125618778 125618778 G T PATE1 3'UTR 0.17 TCGA-06-5416-01 11 125647862 125647862 G A PATE2 Missense_Mutation p.H38Y 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 11 125769509 125769509 C T HYLS1 Silent p.V82V 0.22 TCGA-06-5416-01 11 125880518 125880518 G A CDON Silent p.L424L 0.24 TCGA-06-5416-01 11 125893374 125893374 C T CDON 5'UTR 0.44 TCGA-06-5416-01 11 126104940 126104940 T G FAM118B Missense_Mutation p.F15C 0.51 deleterious_low_confidence(0.03) benign(0.157) TCGA-06-5416-01 11 1261109 1261109 G A MUC5B Missense_Mutation p.D1222N 0.23 unknown(0) TCGA-06-5416-01 11 126147431 126147431 C A FOXRED1 Silent p.G436G 0.22 TCGA-06-5416-01 11 126295540 126295540 T G KIRREL3 Missense_Mutation p.N629T 0.35 tolerated(0.12) benign(0.018) TCGA-06-5416-01 11 1271430 1271430 G A MUC5B Silent p.P4440P 0.52 TCGA-06-5416-01 11 1272334 1272334 G A MUC5B Missense_Mutation p.A4742T 0.25 unknown(0) TCGA-06-5416-01 11 1272406 1272406 G A MUC5B Missense_Mutation p.A4766T 0.21 unknown(0) TCGA-06-5416-01 11 1273662 1273662 G A MUC5B Missense_Mutation p.A4985T 0.27 unknown(0) TCGA-06-5416-01 11 1275514 1275514 G T MUC5B Missense_Mutation p.S5137I 0.44 unknown(0) TCGA-06-5416-01 11 128651901 128651901 G A FLI1 Missense_Mutation p.R213Q 0.21 deleterious(0.04) benign(0.002) TCGA-06-5416-01 11 128709082 128709082 C A KCNJ1 Missense_Mutation p.G372C 0.43 deleterious(0.05) probably_damaging(1) TCGA-06-5416-01 11 128709348 128709348 G A KCNJ1 Missense_Mutation p.A283V 0.23 tolerated(0.62) benign(0.015) TCGA-06-5416-01 11 128709428 128709428 C T KCNJ1 Silent p.G256G 0.44 TCGA-06-5416-01 11 128710123 128710123 G A KCNJ1 Missense_Mutation p.R25W 0.24 deleterious(0) possibly_damaging(0.514) TCGA-06-5416-01 11 128781670 128781670 C T KCNJ5 Missense_Mutation p.L168F 0.45 tolerated(0.34) probably_damaging(0.999) TCGA-06-5416-01 11 128843955 128843955 G T ARHGAP32 Intron 0.21 TCGA-06-5416-01 11 128851432 128851432 G A ARHGAP32 Silent p.C539C 0.22 TCGA-06-5416-01 11 129034220 129034220 G A ARHGAP32 Silent p.S73S 0.21 TCGA-06-5416-01 11 12958847 12958847 G A TEAD1 3'UTR 0.71 TCGA-06-5416-01 11 129755378 129755378 C T NFRKB Missense_Mutation p.E211K 0.46 deleterious(0.02) unknown(0) TCGA-06-5416-01 11 129817046 129817046 C T PRDM10 Missense_Mutation p.D172N 0.45 tolerated(0.25) possibly_damaging(0.768) TCGA-06-5416-01 11 1298308 1298308 G A TOLLIP Silent p.A262A 0.31 TCGA-06-5416-01 11 129993568 129993568 C T APLP2 Silent p.F328F 0.48 TCGA-06-5416-01 11 130005474 130005474 G A APLP2 Silent p.E567E 0.44 TCGA-06-5416-01 11 130013410 130013410 C T APLP2 3'UTR 0.53 TCGA-06-5416-01 11 130058780 130058780 G T ST14 Missense_Mutation p.S129I 0.27 deleterious(0.03) possibly_damaging(0.685) TCGA-06-5416-01 11 130319326 130319326 G A ADAMTS15 Missense_Mutation p.G153D 0.31 tolerated(0.39) benign(0.082) TCGA-06-5416-01 11 130342991 130342991 G A ADAMTS15 Missense_Mutation p.D710N 0.47 deleterious(0.02) probably_damaging(0.986) TCGA-06-5416-01 11 130777881 130777881 C A SNX19 Missense_Mutation p.S711I 0.22 deleterious(0) benign(0.288) TCGA-06-5416-01 11 130784512 130784512 C T SNX19 Silent p.L441L 0.22 TCGA-06-5416-01 11 132184511 132184511 T G NTM Missense_Mutation p.F283C 0.40 tolerated(0.06) probably_damaging(0.986) TCGA-06-5416-01 11 132527170 132527170 C T OPCML Missense_Mutation p.R71H 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 133714517 133714517 G A SPATA19 Missense_Mutation p.R52W 0.42 deleterious(0.01) benign(0.003) TCGA-06-5416-01 11 133795687 133795687 C T IGSF9B Missense_Mutation p.D661N 0.16 tolerated(0.14) probably_damaging(0.984) TCGA-06-5416-01 11 13380075 13380075 T C ARNTL Missense_Mutation p.S106P 0.05 tolerated(0.09) benign(0.315) TCGA-06-5416-01 11 13395733 13395733 G T ARNTL Nonsense_Mutation p.E386* 0.42 TCGA-06-5416-01 11 134014220 134014220 G A JAM3 Missense_Mutation p.R114H 0.19 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 11 134023195 134023195 G A NCAPD3 Missense_Mutation p.S1439L 0.04 tolerated(0.85) benign(0) TCGA-06-5416-01 11 134047288 134047288 G A NCAPD3 Silent p.L949L 0.44 TCGA-06-5416-01 11 134055394 134055394 G A NCAPD3 Silent p.I691I 0.40 TCGA-06-5416-01 11 134114902 134114902 G T VPS26B Missense_Mutation p.K264N 0.42 tolerated(0.47) possibly_damaging(0.561) TCGA-06-5416-01 11 134114916 134114916 G A VPS26B Missense_Mutation p.R269H 0.46 deleterious(0) possibly_damaging(0.616) TCGA-06-5416-01 11 134118745 134118745 G A THYN1 Missense_Mutation p.L197F 0.47 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 11 134177093 134177093 G T GLB1L3 Missense_Mutation p.D318Y 0.18 deleterious(0.02) benign(0.287) TCGA-06-5416-01 11 134214935 134214935 G A GLB1L2 Missense_Mutation p.V121I 0.15 tolerated(1) benign(0.004) TCGA-06-5416-01 11 134253580 134253580 G A B3GAT1 Silent p.F205F 0.31 TCGA-06-5416-01 11 134257455 134257455 G A B3GAT1 Silent p.L33L 0.18 TCGA-06-5416-01 11 13438711 13438711 C T BTBD10 Silent p.A227A 0.47 TCGA-06-5416-01 11 13749124 13749124 C T FAR1 Nonsense_Mutation p.Q427* 0.17 TCGA-06-5416-01 11 14277324 14277324 C T SPON1 RNA 0.47 TCGA-06-5416-01 11 14279348 14279348 C T SPON1 RNA 0.22 TCGA-06-5416-01 11 14316076 14316076 G A RRAS2 Missense_Mutation p.R117C 0.34 tolerated(0.09) probably_damaging(0.999) TCGA-06-5416-01 11 14316346 14316346 C T RRAS2 Missense_Mutation p.E87K 0.24 tolerated(0.06) possibly_damaging(0.461) TCGA-06-5416-01 11 14317326 14317326 C T RRAS2 Missense_Mutation p.A62T 0.45 tolerated(0.11) probably_damaging(0.96) TCGA-06-5416-01 11 14535134 14535134 T A PSMA1 Missense_Mutation p.M182L 0.46 tolerated(1) benign(0.001) TCGA-06-5416-01 11 14666457 14666457 C T PDE3B Missense_Mutation p.S279F 0.18 tolerated(0.06) benign(0.352) TCGA-06-5416-01 11 1467103 1467103 C T BRSK2 Missense_Mutation p.R444W 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 14852390 14852390 A C PDE3B Missense_Mutation p.N652H 0.17 tolerated(0.18) possibly_damaging(0.615) TCGA-06-5416-01 11 14902249 14902249 G A CYP2R1 Nonsense_Mutation p.R145* 0.18 TCGA-06-5416-01 11 14990209 14990209 C A CALCA 3'UTR 0.53 TCGA-06-5416-01 11 1578608 1578608 C T DUSP8 Missense_Mutation p.A340T 0.55 tolerated(0.22) benign(0.006) TCGA-06-5416-01 11 15994229 15994229 G A SOX6 3'UTR 0.16 TCGA-06-5416-01 11 1628856 1628856 G T KRTAP5-3 3'UTR 0.45 TCGA-06-5416-01 11 1643105 1643105 G T KRTAP5-4 Silent p.S73S 0.17 TCGA-06-5416-01 11 16847943 16847943 C T PLEKHA7 Missense_Mutation p.R356Q 0.20 tolerated(0.43) benign(0.001) TCGA-06-5416-01 11 16863258 16863258 C T PLEKHA7 Silent p.T236T 0.18 TCGA-06-5416-01 11 16872737 16872737 C T PLEKHA7 Splice_Site p.X232_splice 0.23 TCGA-06-5416-01 11 17111384 17111384 C A PIK3C2A Missense_Mutation p.E1654D 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 17122927 17122928 - C PIK3C2A Frame_Shift_Ins p.E1303* 0.24 TCGA-06-5416-01 11 17140790 17140790 C T PIK3C2A Missense_Mutation p.D973N 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 17153536 17153536 G T PIK3C2A Missense_Mutation p.L720I 0.20 tolerated(0.15) probably_damaging(0.971) TCGA-06-5416-01 11 17414607 17414607 G A ABCC8 Silent p.F1559F 0.41 TCGA-06-5416-01 11 17426152 17426152 A G ABCC8 Missense_Mutation p.V1155A 0.48 deleterious(0) benign(0.074) TCGA-06-5416-01 11 17449902 17449902 G A ABCC8 Silent p.G658G 0.24 TCGA-06-5416-01 11 17464736 17464736 G A ABCC8 Missense_Mutation p.R486W 0.39 deleterious(0) benign(0.152) TCGA-06-5416-01 11 17741363 17741363 G T MYOD1 Missense_Mutation p.D12Y 0.19 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 11 17757602 17757602 G A KCNC1 Missense_Mutation p.R18H 0.46 deleterious(0) probably_damaging(0.975) TCGA-06-5416-01 11 1776161 1776161 C T CTSD Missense_Mutation p.A268T 0.25 deleterious(0.04) probably_damaging(0.995) TCGA-06-5416-01 11 18054906 18054906 G T TPH1 Missense_Mutation p.P106H 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 11 18158872 18158872 G A MRGPRX3 Silent p.A41A 0.45 TCGA-06-5416-01 11 18158997 18158997 C T MRGPRX3 Missense_Mutation p.S83L 0.18 tolerated(0.15) benign(0.077) TCGA-06-5416-01 11 18195622 18195622 C T MRGPRX4 Silent p.F273F 0.23 TCGA-06-5416-01 11 18332304 18332304 G T HPS5 Missense_Mutation p.T154N 0.23 deleterious(0.01) possibly_damaging(0.543) TCGA-06-5416-01 11 18428701 18428701 T C LDHA Missense_Mutation p.V320A 0.45 deleterious(0.01) possibly_damaging(0.886) TCGA-06-5416-01 11 18460111 18460111 C T LDHC Missense_Mutation p.A210V 0.46 tolerated(0.08) benign(0.155) TCGA-06-5416-01 11 18478242 18478242 G T LDHAL6A Missense_Mutation p.K5N 0.36 deleterious(0) benign(0.227) TCGA-06-5416-01 11 1861883 1861883 G A TNNI2 Silent p.V61V 0.41 TCGA-06-5416-01 11 18723397 18723397 C A TMEM86A Silent p.I188I 0.22 TCGA-06-5416-01 11 18729476 18729476 G A IGSF22 Missense_Mutation p.T1052I 0.44 tolerated(0.11) possibly_damaging(0.865) TCGA-06-5416-01 11 19177416 19177416 C A ZDHHC13 Missense_Mutation p.S316Y 0.17 deleterious(0) benign(0.235) TCGA-06-5416-01 11 19246096 19246096 C A E2F8 3'UTR 0.59 TCGA-06-5416-01 11 19261679 19261679 C T E2F8 5'UTR 0.12 TCGA-06-5416-01 11 194542 194542 C A SCGB1C1 3'UTR 0.18 TCGA-06-5416-01 11 1955850 1955850 G A TNNT3 Silent p.P185P 0.35 TCGA-06-5416-01 11 197647 197647 C T ODF3 Missense_Mutation p.P66S 0.35 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 19914136 19914136 G T NAV2 Missense_Mutation p.E332D 0.39 tolerated(0.4) benign(0.003) TCGA-06-5416-01 11 19961216 19961216 G A NAV2 Silent p.T704T 0.40 TCGA-06-5416-01 11 20066556 20066556 C A NAV2 Missense_Mutation p.S1104Y 0.25 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 11 20066580 20066580 G A NAV2 Missense_Mutation p.R1112H 0.39 deleterious(0.02) probably_damaging(0.997) TCGA-06-5416-01 11 20070311 20070311 G A NAV2 Missense_Mutation p.A1337T 0.22 tolerated(0.78) benign(0.002) TCGA-06-5416-01 11 210615 210615 C A RIC8A Missense_Mutation p.H257Q 0.19 deleterious(0.03) benign(0.073) TCGA-06-5416-01 11 2154007 2154007 T C IGF2 3'UTR 0.22 TCGA-06-5416-01 11 2170374 2170374 G A INS-IGF2 Missense_Mutation p.A130V 0.45 deleterious_low_confidence(0.01) benign(0.05) TCGA-06-5416-01 11 218870 218870 C A SIRT3 Nonsense_Mutation p.E381* 0.22 TCGA-06-5416-01 11 22232852 22232852 G A ANO5 Missense_Mutation p.E44K 0.24 tolerated(0.13) benign(0.004) TCGA-06-5416-01 11 22279285 22279285 C T ANO5 Silent p.A464A 0.23 TCGA-06-5416-01 11 22296114 22296114 G T ANO5 Splice_Site p.X746_splice 0.18 TCGA-06-5416-01 11 2356691 2356691 C T CD81-AS1 Intron 0.18 TCGA-06-5416-01 11 2415365 2415365 C T CD81 Silent p.F74F 0.22 TCGA-06-5416-01 11 2424076 2424076 C T TSSC4 Silent p.G71G 0.20 TCGA-06-5416-01 11 2427272 2427272 G A TRPM5 Missense_Mutation p.R1101C 0.43 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 11 2482735 2482735 C T KCNQ1 Intron 0.32 TCGA-06-5416-01 11 25004678 25004678 C T LUZP2 Nonsense_Mutation p.Q202* 0.44 TCGA-06-5416-01 11 2591983 2591983 C T KCNQ1 Silent p.I201I 0.49 TCGA-06-5416-01 11 2594200 2594200 C T KCNQ1 Missense_Mutation p.A302V 0.13 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 26353842 26353842 C A ANO3 Missense_Mutation p.S7Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-06-5416-01 11 26558988 26558988 G T ANO3 Missense_Mutation p.A338S 0.45 tolerated(0.23) possibly_damaging(0.624) TCGA-06-5416-01 11 26681884 26681884 C T ANO3 Nonsense_Mutation p.R947* 0.21 TCGA-06-5416-01 11 26692575 26692575 G A SLC5A12 3'UTR 0.54 TCGA-06-5416-01 11 26692713 26692713 A G SLC5A12 Missense_Mutation p.V598A 0.19 tolerated_low_confidence(0.34) benign(0) TCGA-06-5416-01 11 26725210 26725210 A G SLC5A12 Missense_Mutation p.V230A 0.42 tolerated(0.1) benign(0.024) TCGA-06-5416-01 11 27389344 27389344 G T LGR4 3'UTR 0.18 TCGA-06-5416-01 11 28045380 28045380 G A KIF18A Missense_Mutation p.S841L 0.16 tolerated(0.27) benign(0.002) TCGA-06-5416-01 11 280493 280493 C T NLRP6 Silent p.I253I 0.22 TCGA-06-5416-01 11 28104408 28104408 G A KIF18A Silent p.I419I 0.36 TCGA-06-5416-01 11 28134918 28134918 G T METTL15 Nonsense_Mutation p.E13* 0.30 TCGA-06-5416-01 11 292601 292601 A G ATHL1 Missense_Mutation p.D361G 0.43 tolerated(0.07) possibly_damaging(0.72) TCGA-06-5416-01 11 2991118 2991118 G A NAP1L4 Missense_Mutation p.T150M 0.39 tolerated(0.11) possibly_damaging(0.759) TCGA-06-5416-01 11 30033735 30033735 C T KCNA4 Missense_Mutation p.G164D 0.15 tolerated(0.52) possibly_damaging(0.82) TCGA-06-5416-01 11 30033979 30033979 G A KCNA4 Missense_Mutation p.R83W 0.49 tolerated_low_confidence(0.15) benign(0.002) TCGA-06-5416-01 11 30921138 30921138 C A DCDC1 Missense_Mutation p.R1569I 0.41 deleterious(0) benign(0.005) TCGA-06-5416-01 11 30937188 30937188 T C DCDC1 Missense_Mutation p.I1175V 0.22 tolerated(0.57) benign(0.068) TCGA-06-5416-01 11 30944075 30944075 G T DCDC1 Silent p.I1036I 0.38 TCGA-06-5416-01 11 31123812 31123812 C T DCDC1 Missense_Mutation p.G632E 0.33 tolerated(0.11) possibly_damaging(0.483) TCGA-06-5416-01 11 314107 314107 G A IFITM1 5'UTR 0.46 TCGA-06-5416-01 11 31648720 31648720 A G ELP4 Silent p.G239G 0.21 TCGA-06-5416-01 11 31805088 31805088 C T ELP4 3'UTR 0.44 TCGA-06-5416-01 11 3249706 3249706 G A MRGPRE Silent p.I107I 0.29 TCGA-06-5416-01 11 3249965 3249965 G A MRGPRE Missense_Mutation p.A21V 0.35 tolerated(0.15) benign(0.151) TCGA-06-5416-01 11 32610576 32610576 C T EIF3M Silent p.H111H 0.25 TCGA-06-5416-01 11 32676452 32676452 C T CCDC73 Missense_Mutation p.E238K 0.23 deleterious(0.02) possibly_damaging(0.453) TCGA-06-5416-01 11 32781805 32781805 C A CCDC73 Splice_Site 0.47 TCGA-06-5416-01 11 32949652 32949652 C T QSER1 Missense_Mutation p.A27V 0.38 deleterious(0.05) probably_damaging(0.971) TCGA-06-5416-01 11 32953991 32953991 C T QSER1 Missense_Mutation p.A267V 0.40 tolerated(0.28) benign(0.002) TCGA-06-5416-01 11 32954444 32954444 C T QSER1 Missense_Mutation p.S418F 0.43 deleterious(0.04) possibly_damaging(0.815) TCGA-06-5416-01 11 32955366 32955366 C T QSER1 Silent p.V725V 0.46 TCGA-06-5416-01 11 32979495 32979495 C T QSER1 Missense_Mutation p.S1482F 0.26 deleterious(0) possibly_damaging(0.866) TCGA-06-5416-01 11 32997969 32997969 C A QSER1 Silent p.L1719L 0.18 TCGA-06-5416-01 11 33055035 33055035 A C DEPDC7 3'UTR 0.26 TCGA-06-5416-01 11 33094360 33094360 A G TCP11L1 3'UTR 0.19 TCGA-06-5416-01 11 33127413 33127413 C A CSTF3 Intron 0.19 TCGA-06-5416-01 11 33163479 33163479 C A CSTF3 Missense_Mutation p.E27D 0.46 tolerated(0.5) benign(0) TCGA-06-5416-01 11 33370363 33370363 G T HIPK3 Nonsense_Mutation p.E889* 0.36 TCGA-06-5416-01 11 33563947 33563947 G A KIAA1549L 5'UTR 0.44 TCGA-06-5416-01 11 33566493 33566493 T C KIAA1549L Missense_Mutation p.V688A 0.45 tolerated_low_confidence(0.86) benign(0.006) TCGA-06-5416-01 11 33572658 33572658 C T KIAA1549L Missense_Mutation p.P895S 0.15 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 11 33572673 33572673 G A KIAA1549L Missense_Mutation p.E900K 0.19 deleterious(0.01) possibly_damaging(0.621) TCGA-06-5416-01 11 33573718 33573718 G T KIAA1549L Missense_Mutation p.Q965H 0.41 deleterious(0.05) benign(0.35) TCGA-06-5416-01 11 33604951 33604951 C T KIAA1549L Silent p.V1193V 0.37 TCGA-06-5416-01 11 33667511 33667511 C T KIAA1549L Missense_Mutation p.R1600W 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 33768778 33768778 A C FBXO3 Nonsense_Mutation p.Y379* 0.48 TCGA-06-5416-01 11 33772091 33772091 C T FBXO3 Missense_Mutation p.R309Q 0.35 tolerated(0.06) benign(0.27) TCGA-06-5416-01 11 33795972 33795972 G T FBXO3 Silent p.I24I 0.16 TCGA-06-5416-01 11 3380578 3380578 C A ZNF195 Nonsense_Mutation p.E554* 0.26 TCGA-06-5416-01 11 34097798 34097798 A C CAPRIN1 Missense_Mutation p.K128Q 0.27 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 11 34184251 34184251 G A ABTB2 Missense_Mutation p.S697L 0.41 tolerated(0.19) benign(0.003) TCGA-06-5416-01 11 34478298 34478298 A G CAT Silent p.E330E 0.19 TCGA-06-5416-01 11 34492537 34492537 C T CAT Silent p.Y489Y 0.23 TCGA-06-5416-01 11 34493006 34493006 G A CAT 3'UTR 0.24 TCGA-06-5416-01 11 35222666 35222666 G T CD44 Missense_Mutation p.Q320H 0.37 tolerated(0.14) possibly_damaging(0.764) TCGA-06-5416-01 11 35232810 35232810 G T CD44 Missense_Mutation p.G542C 0.20 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 11 35250984 35250984 G A CD44 3'UTR 0.36 TCGA-06-5416-01 11 35323135 35323153 GCCTGATCTCCCATCTTCC - SLC1A2 Frame_Shift_Del p.G257Afs*3 0.37 TCGA-06-5416-01 11 36422687 36422687 G A PRR5L Missense_Mutation p.A6T 0.46 tolerated_low_confidence(0.12) benign(0.002) TCGA-06-5416-01 11 36596384 36596384 G T RAG1 Missense_Mutation p.E510D 0.17 deleterious_low_confidence(0.01) probably_damaging(0.931) TCGA-06-5416-01 11 36614667 36614667 G A RAG2 Missense_Mutation p.A351V 0.50 tolerated(0.21) benign(0.111) TCGA-06-5416-01 11 36614945 36614945 G T RAG2 Silent p.V258V 0.48 TCGA-06-5416-01 11 3681168 3681168 G A ART1 Missense_Mutation p.R140H 0.23 tolerated(0.05) benign(0.26) TCGA-06-5416-01 11 3682607 3682607 A C ART1 Missense_Mutation p.K284Q 0.38 tolerated(0.79) benign(0.001) TCGA-06-5416-01 11 3687519 3687519 G A CHRNA10 Missense_Mutation p.R391C 0.24 tolerated(0.14) benign(0.009) TCGA-06-5416-01 11 3688947 3688947 C T CHRNA10 Missense_Mutation p.R137H 0.33 deleterious(0.02) benign(0.035) TCGA-06-5416-01 11 3697754 3697754 G A NUP98 Missense_Mutation p.R1724C 0.41 deleterious(0.02) possibly_damaging(0.885) TCGA-06-5416-01 11 3704532 3704532 G A NUP98 Nonsense_Mutation p.R1606* 0.25 TCGA-06-5416-01 11 3704635 3704635 C T NUP98 Silent p.R1571R 0.42 TCGA-06-5416-01 11 3712661 3712661 G T NUP98 Missense_Mutation p.S1457Y 0.40 deleterious(0.04) benign(0.299) TCGA-06-5416-01 11 3720474 3720474 G T NUP98 Missense_Mutation p.L1283M 0.23 tolerated(0.47) probably_damaging(0.999) TCGA-06-5416-01 11 3740710 3740710 G A NUP98 Silent p.I777I 0.44 TCGA-06-5416-01 11 40136344 40136344 G A LRRC4C Missense_Mutation p.S500L 0.41 tolerated(0.12) benign(0.011) TCGA-06-5416-01 11 408102 408102 C T SIGIRR Missense_Mutation p.S104N 0.22 tolerated(0.12) benign(0.021) TCGA-06-5416-01 11 4104680 4104680 G A STIM1 Missense_Mutation p.D476N 0.21 deleterious(0.02) possibly_damaging(0.552) TCGA-06-5416-01 11 4112889 4112889 G T STIM1 Missense_Mutation p.R640L 0.25 tolerated_low_confidence(0.06) benign(0.032) TCGA-06-5416-01 11 4133217 4133217 T A RRM1 Missense_Mutation p.L192H 0.17 deleterious_low_confidence(0.01) probably_damaging(0.955) TCGA-06-5416-01 11 4133248 4133248 G A RRM1 Silent p.S202S 0.27 TCGA-06-5416-01 11 4141133 4141133 G A RRM1 Missense_Mutation p.R284Q 0.19 deleterious_low_confidence(0.01) benign(0.196) TCGA-06-5416-01 11 4142835 4142835 G A RRM1 Missense_Mutation p.R293H 0.52 deleterious_low_confidence(0) probably_damaging(0.956) TCGA-06-5416-01 11 43284077 43284077 C T HNRNPKP3 RNA 0.22 TCGA-06-5416-01 11 43284592 43284592 C A HNRNPKP3 RNA 0.23 TCGA-06-5416-01 11 43380599 43380599 C T TTC17 Missense_Mutation p.A32V 0.22 tolerated_low_confidence(0.37) benign(0.001) TCGA-06-5416-01 11 43436312 43436312 C T TTC17 Missense_Mutation p.S746F 0.23 deleterious(0.01) possibly_damaging(0.798) TCGA-06-5416-01 11 43465614 43465614 C A TTC17 Missense_Mutation p.F840L 0.23 tolerated(0.15) probably_damaging(0.986) TCGA-06-5416-01 11 43471692 43471692 C T TTC17 Silent p.C949C 0.25 TCGA-06-5416-01 11 43515469 43515469 C A TTC17 3'UTR 0.20 TCGA-06-5416-01 11 43913617 43913617 A G ALKBH3 Missense_Mutation p.T133A 0.43 deleterious(0.01) probably_damaging(0.941) TCGA-06-5416-01 11 44069530 44069530 G A ACCSL 5'Flank 0.18 TCGA-06-5416-01 11 44079875 44079875 G T ACCSL Missense_Mutation p.D446Y 0.20 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 11 44089268 44089268 G T ACCS Missense_Mutation p.D31Y 0.23 deleterious(0.02) benign(0.423) TCGA-06-5416-01 11 44095009 44095009 G A ACCS Missense_Mutation p.D121N 0.52 deleterious(0.02) benign(0.365) TCGA-06-5416-01 11 44099458 44099458 G A ACCS Missense_Mutation p.E240K 0.21 tolerated(0.32) benign(0.009) TCGA-06-5416-01 11 44148492 44148492 C A EXT2 Missense_Mutation p.L389I 0.45 tolerated(1) benign(0.343) TCGA-06-5416-01 11 44193288 44193288 C A EXT2 Missense_Mutation p.A467D 0.23 tolerated(0.64) benign(0.005) TCGA-06-5416-01 11 44219549 44219549 G T EXT2 Missense_Mutation p.Q525H 0.47 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 11 44255701 44255701 G T EXT2 Missense_Mutation p.D648Y 0.21 deleterious(0.01) probably_damaging(0.929) TCGA-06-5416-01 11 44286593 44286593 G A ALX4 Silent p.F349F 0.40 TCGA-06-5416-01 11 44297055 44297055 G A ALX4 Missense_Mutation p.S207L 0.49 deleterious(0.02) probably_damaging(0.95) TCGA-06-5416-01 11 4470977 4470977 G T OR52K2 Missense_Mutation p.K136N 0.33 deleterious(0.01) benign(0.001) TCGA-06-5416-01 11 4471098 4471098 G A OR52K2 Missense_Mutation p.A177T 0.45 deleterious(0.03) possibly_damaging(0.804) TCGA-06-5416-01 11 44957128 44957128 G A TP53I11 Silent p.F140F 0.25 TCGA-06-5416-01 11 45117449 45117449 G T PRDM11 Missense_Mutation p.E31D 0.24 tolerated_low_confidence(0.53) benign(0) TCGA-06-5416-01 11 45246527 45246527 C T PRDM11 3'UTR 0.19 TCGA-06-5416-01 11 4566555 4566555 G T OR52M1 Silent p.V45V 0.17 TCGA-06-5416-01 11 4567000 4567000 G A OR52M1 Missense_Mutation p.D194N 0.17 deleterious(0.04) benign(0.26) TCGA-06-5416-01 11 45891622 45891622 C A CRY2 Missense_Mutation p.L426M 0.19 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 11 45891915 45891915 C T CRY2 Nonsense_Mutation p.R482* 0.44 TCGA-06-5416-01 11 45926764 45926764 C A MAPK8IP1 Missense_Mutation p.S676Y 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 45927419 45927419 G A MAPK8IP1 3'UTR 0.53 TCGA-06-5416-01 11 45937273 45937273 C T PEX16 Missense_Mutation p.A114T 0.17 tolerated(0.09) benign(0.208) TCGA-06-5416-01 11 45948098 45948098 C T GYLTL1B Missense_Mutation p.R372W 0.23 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 11 45957256 45957256 C T PHF21A Nonsense_Mutation p.W572* 0.18 TCGA-06-5416-01 11 45987006 45987006 G A PHF21A Missense_Mutation p.R285C 0.41 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 46342033 46342033 G A CREB3L1 Missense_Mutation p.G493S 0.35 tolerated_low_confidence(0.8) benign(0.001) TCGA-06-5416-01 11 46389624 46389624 G A DGKZ Missense_Mutation p.E335K 0.20 deleterious(0.01) possibly_damaging(0.488) TCGA-06-5416-01 11 46394020 46394020 C T DGKZ Nonsense_Mutation p.R512* 0.04 TCGA-06-5416-01 11 46398661 46398661 G T DGKZ Missense_Mutation p.E935D 0.21 tolerated(0.08) benign(0.005) TCGA-06-5416-01 11 46405023 46405023 G T MDK Missense_Mutation p.K137N 0.24 tolerated(0.14) unknown(0) TCGA-06-5416-01 11 46407070 46407070 C T CHRM4 Silent p.T346T 0.25 TCGA-06-5416-01 11 46408021 46408021 C T CHRM4 Silent p.T29T 0.17 TCGA-06-5416-01 11 46419348 46419348 G A AMBRA1 Silent p.I1093I 0.43 TCGA-06-5416-01 11 46465138 46465138 G A AMBRA1 Silent p.I754I 0.44 TCGA-06-5416-01 11 46563604 46563604 C A AMBRA1 Missense_Mutation p.G565C 0.24 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 11 46564416 46564416 C T AMBRA1 Missense_Mutation p.R294H 0.18 tolerated_low_confidence(0.07) possibly_damaging(0.885) TCGA-06-5416-01 11 46694124 46694124 C T ATG13 3'UTR 0.40 TCGA-06-5416-01 11 46702565 46702565 G A ARHGAP1 Missense_Mutation p.L211F 0.22 deleterious(0.03) probably_damaging(0.972) TCGA-06-5416-01 11 46726757 46726757 C T ZNF408 Missense_Mutation p.R503W 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 4674013 4674013 C T OR51E1 Missense_Mutation p.A86V 0.24 deleterious(0.02) benign(0.079) TCGA-06-5416-01 11 46750236 46750236 A G F2 Missense_Mutation p.I441V 0.41 tolerated(0.06) possibly_damaging(0.855) TCGA-06-5416-01 11 46890548 46890548 G A LRP4 Missense_Mutation p.R1610W 0.45 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 11 46894790 46894790 G T LRP4 Intron 0.12 TCGA-06-5416-01 11 47183094 47183094 C A C11orf49 Silent p.R307R 0.17 TCGA-06-5416-01 11 47198126 47198126 G A ARFGAP2 Silent p.F44F 0.22 TCGA-06-5416-01 11 47204028 47204028 C T PACSIN3 Missense_Mutation p.R46H 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 47267074 47267074 T C ACP2 Missense_Mutation p.N167S 0.07 tolerated(0.31) possibly_damaging(0.731) TCGA-06-5416-01 11 47282009 47282009 G A NR1H3 Silent p.G94G 0.26 TCGA-06-5416-01 11 47289884 47289884 A G NR1H3 Missense_Mutation p.Y392C 0.45 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 11 47305829 47305829 C T MADD Missense_Mutation p.P655S 0.48 tolerated(0.09) benign(0.045) TCGA-06-5416-01 11 47305949 47305949 G A MADD Missense_Mutation p.A664T 0.21 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-06-5416-01 11 47311461 47311461 G A MADD Missense_Mutation p.D954N 0.43 tolerated(0.08) possibly_damaging(0.735) TCGA-06-5416-01 11 47331110 47331110 C T MADD Missense_Mutation p.R1369C 0.21 deleterious(0) probably_damaging(0.953) TCGA-06-5416-01 11 47365092 47365092 C T MYBPC3 Missense_Mutation p.A392T 0.33 tolerated(0.36) probably_damaging(0.946) TCGA-06-5416-01 11 47372979 47372979 G A MYBPC3 Missense_Mutation p.R35W 0.45 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-06-5416-01 11 47397281 47397281 C A SPI1 Missense_Mutation p.Q16H 0.23 tolerated(0.41) possibly_damaging(0.46) TCGA-06-5416-01 11 47399894 47399894 G A SPI1 Missense_Mutation p.A4V 0.40 deleterious_low_confidence(0.02) benign(0.138) TCGA-06-5416-01 11 47436955 47436955 G T SLC39A13 3'UTR 0.26 TCGA-06-5416-01 11 47437002 47437002 C T SLC39A13 3'UTR 0.20 TCGA-06-5416-01 11 47593157 47593157 G A PTPMT1 Silent p.G194G 0.45 TCGA-06-5416-01 11 47656240 47656240 T C MTCH2 Missense_Mutation p.D118G 0.41 tolerated(0.17) benign(0.338) TCGA-06-5416-01 11 47786835 47786835 A T FNBP4 Silent p.A100A 0.42 TCGA-06-5416-01 11 47804632 47804632 C A NUP160 Missense_Mutation p.G1370V 0.48 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 11 47833762 47833762 T C NUP160 Missense_Mutation p.I699V 0.47 tolerated(1) benign(0) TCGA-06-5416-01 11 4790530 4790530 G T OR51F1 Silent p.I206I 0.21 TCGA-06-5416-01 11 48158689 48158689 G A PTPRJ Missense_Mutation p.A670T 0.21 tolerated(0.6) benign(0.025) TCGA-06-5416-01 11 48166319 48166319 G T PTPRJ Nonsense_Mutation p.E890* 0.46 TCGA-06-5416-01 11 48177352 48177352 G T PTPRJ Splice_Site p.X1077_splice 0.20 TCGA-06-5416-01 11 4842930 4842930 A C OR51F2 Missense_Mutation p.E105D 0.05 tolerated(0.06) benign(0.276) TCGA-06-5416-01 11 4842973 4842973 G T OR51F2 Nonsense_Mutation p.G120* 0.47 TCGA-06-5416-01 11 4869969 4869969 G A OR51S1 Missense_Mutation p.S157F 0.49 tolerated(0.11) benign(0.003) TCGA-06-5416-01 11 4870133 4870133 G T OR51S1 Silent p.A102A 0.20 TCGA-06-5416-01 11 4936167 4936167 G T OR51G2 Missense_Mutation p.L243I 0.41 deleterious(0.01) possibly_damaging(0.626) TCGA-06-5416-01 11 4936231 4936231 G T OR51G2 Missense_Mutation p.F221L 0.38 tolerated(1) benign(0.004) TCGA-06-5416-01 11 4936722 4936722 G A OR51G2 Missense_Mutation p.R58C 0.45 deleterious(0) benign(0.001) TCGA-06-5416-01 11 4945309 4945310 - A OR51G1 Frame_Shift_Ins p.W88Lfs*3 0.41 TCGA-06-5416-01 11 49973999 49973999 G A OR4C13 Missense_Mutation p.E9K 0.04 deleterious_low_confidence(0.01) benign(0.191) TCGA-06-5416-01 11 5068255 5068255 G A OR52J3 Missense_Mutation p.R167H 0.25 deleterious(0.03) benign(0.127) TCGA-06-5416-01 11 5068485 5068485 G A OR52J3 Missense_Mutation p.A244T 0.41 deleterious(0.01) benign(0.017) TCGA-06-5416-01 11 5080741 5080741 G A OR52E2 Silent p.I39I 0.39 TCGA-06-5416-01 11 51412290 51412290 T C OR4A5 Missense_Mutation p.T36A 0.21 deleterious_low_confidence(0) possibly_damaging(0.76) TCGA-06-5416-01 11 5254186 5254186 C T HBD 3'UTR 0.39 TCGA-06-5416-01 11 5275687 5275687 G A HBG2 Silent p.S50S 0.18 TCGA-06-5416-01 11 5322608 5322608 G A OR51B4 Missense_Mutation p.T190M 0.26 deleterious(0.02) possibly_damaging(0.605) TCGA-06-5416-01 11 5322705 5322705 G T OR51B4 Missense_Mutation p.L158I 0.28 tolerated(0.74) benign(0.034) TCGA-06-5416-01 11 5345383 5345383 G A OR51B2 Missense_Mutation p.H49Y 0.25 deleterious(0) benign(0.029) TCGA-06-5416-01 11 5364607 5364607 C A OR51B5 Missense_Mutation p.D50Y 0.31 deleterious(0.03) benign(0.078) TCGA-06-5416-01 11 5364671 5364671 A C OR51B5 Missense_Mutation p.F28L 0.16 tolerated(0.08) benign(0) TCGA-06-5416-01 11 5443929 5443929 C T OR51Q1 Nonsense_Mutation p.R167* 0.45 TCGA-06-5416-01 11 55032584 55032584 C T TRIM48 Nonsense_Mutation p.R85* 0.40 TCGA-06-5416-01 11 55032622 55032622 T C TRIM48 Silent p.S97S 0.35 TCGA-06-5416-01 11 55038418 55038418 G A TRIM48 3'UTR 0.23 TCGA-06-5416-01 11 5529475 5529475 G T UBQLN3 Missense_Mutation p.S438R 0.23 deleterious(0) benign(0.221) TCGA-06-5416-01 11 55322403 55322403 G A OR4C15 Silent p.L207L 0.20 TCGA-06-5416-01 11 55339970 55339970 G A OR4C16 Missense_Mutation p.D123N 0.20 deleterious(0) benign(0.003) TCGA-06-5416-01 11 55340352 55340352 G A OR4C16 Missense_Mutation p.G250E 0.20 deleterious(0.02) probably_damaging(0.962) TCGA-06-5416-01 11 5537054 5537054 C T UBQLNL Silent p.Q206Q 0.06 TCGA-06-5416-01 11 55419074 55419074 G A OR4S2 Missense_Mutation p.R232H 0.92 tolerated(0.17) benign(0.01) TCGA-06-5416-01 11 55541419 55541419 C T OR5D13 Missense_Mutation p.S169L 0.21 deleterious(0.01) possibly_damaging(0.783) TCGA-06-5416-01 11 55541534 55541534 C T OR5D13 Silent p.F207F 0.22 TCGA-06-5416-01 11 55579409 55579409 C A OR5L1 Missense_Mutation p.S156Y 0.18 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 11 55579843 55579843 C A OR5L1 Missense_Mutation p.L301I 0.20 tolerated(0.1) benign(0.043) TCGA-06-5416-01 11 55653583 55653583 C T TRIM51 Intron 0.20 TCGA-06-5416-01 11 55735257 55735257 G A OR10AG1 Missense_Mutation p.A228V 0.46 deleterious(0.02) possibly_damaging(0.715) TCGA-06-5416-01 11 55890191 55890191 C T OR8H3 Missense_Mutation p.L115F 0.42 tolerated(0.07) probably_damaging(0.994) TCGA-06-5416-01 11 55944309 55944309 C A OR5J2 Nonsense_Mutation p.C72* 0.19 TCGA-06-5416-01 11 56020328 56020328 C A OR5T3 Missense_Mutation p.S218Y 0.39 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 11 5602270 5602270 A G OR52B6 Missense_Mutation p.Y55C 0.24 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 11 5603094 5603094 C A OR52B6 Missense_Mutation p.L330I 0.48 tolerated(0.49) benign(0.002) TCGA-06-5416-01 11 56043445 56043445 A G OR5T1 Missense_Mutation p.T111A 0.21 tolerated(1) benign(0.002) TCGA-06-5416-01 11 56057615 56057615 C A OR8H1 Missense_Mutation p.Q308H 0.17 tolerated(0.05) benign(0.001) TCGA-06-5416-01 11 56086326 56086326 C T OR8K3 Missense_Mutation p.L182F 0.20 deleterious_low_confidence(0.04) benign(0.262) TCGA-06-5416-01 11 56184823 56184823 C A OR5R1 Nonsense_Mutation p.E296* 0.19 TCGA-06-5416-01 11 56237629 56237629 C T OR5M3 Silent p.A115A 0.44 TCGA-06-5416-01 11 56257955 56257955 C A OR5M8 Nonsense_Mutation p.E298* 0.20 TCGA-06-5416-01 11 5632712 5632712 C A TRIM6 3'UTR 0.39 TCGA-06-5416-01 11 56380377 56380377 A G OR5M1 Missense_Mutation p.V201A 0.44 tolerated(0.29) benign(0.023) TCGA-06-5416-01 11 56409778 56409778 C A OR5AP2 Silent p.V46V 0.15 TCGA-06-5416-01 11 56468719 56468719 C A OR9G1 Missense_Mutation p.L286I 0.17 deleterious(0) benign(0.001) TCGA-06-5416-01 11 56510301 56510301 C T OR9G4 3'Flank 0.21 TCGA-06-5416-01 11 56510683 56510683 A G OR9G4 Missense_Mutation p.M202T 0.34 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 11 5664584 5664584 C T TRIM34 Missense_Mutation p.S371F 0.23 tolerated(0.07) benign(0.071) TCGA-06-5416-01 11 57177564 57177564 G A SLC43A3 Missense_Mutation p.S364L 0.21 deleterious(0.01) possibly_damaging(0.509) TCGA-06-5416-01 11 57188497 57188497 G T SLC43A3 Missense_Mutation p.T160N 0.16 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 11 5730683 5730683 C A TRIM22 Silent p.L434L 0.19 TCGA-06-5416-01 11 57310545 57310545 G A SMTNL1 Missense_Mutation p.A162T 0.64 tolerated(0.1) benign(0.021) TCGA-06-5416-01 11 57311157 57311157 G A SMTNL1 Missense_Mutation p.A283T 0.46 tolerated(0.09) possibly_damaging(0.849) TCGA-06-5416-01 11 57322049 57322049 G A UBE2L6 Silent p.F57F 0.17 TCGA-06-5416-01 11 57367450 57367450 C A SERPING1 Silent p.I50I 0.52 TCGA-06-5416-01 11 57428815 57428815 G A CLP1 Silent p.E395E 0.27 TCGA-06-5416-01 11 5757716 5757716 A G OR56B1 5'UTR 0.41 TCGA-06-5416-01 11 57798591 57798591 G A OR6Q1 Missense_Mutation p.R56Q 0.24 tolerated(1) benign(0.004) TCGA-06-5416-01 11 57886031 57886031 C A OR9I1 Missense_Mutation p.D296Y 0.14 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 11 57958269 57958269 C A OR9Q2 Missense_Mutation p.L103I 0.23 deleterious(0.04) possibly_damaging(0.493) TCGA-06-5416-01 11 57971255 57971255 G A OR1S2 Silent p.F133F 0.46 TCGA-06-5416-01 11 57982265 57982265 G T OR1S1 Nonsense_Mutation p.G17* 0.26 TCGA-06-5416-01 11 57982495 57982495 A C OR1S1 Missense_Mutation p.K93N 0.18 deleterious(0.03) probably_damaging(0.95) TCGA-06-5416-01 11 57982915 57982915 C G OR1S1 Missense_Mutation p.C233W 0.13 tolerated(0.18) possibly_damaging(0.852) TCGA-06-5416-01 11 57995574 57995574 G A OR10Q1 Silent p.G258G 0.32 TCGA-06-5416-01 11 58034544 58034544 G A OR10W1 Missense_Mutation p.R263W 0.45 deleterious(0.02) possibly_damaging(0.606) TCGA-06-5416-01 11 58035049 58035049 G A OR10W1 Silent p.F94F 0.41 TCGA-06-5416-01 11 58035204 58035204 C T OR10W1 Missense_Mutation p.E43K 0.47 tolerated(0.15) possibly_damaging(0.713) TCGA-06-5416-01 11 5809088 5809088 A C OR52N1 Missense_Mutation p.F320C 0.49 deleterious_low_confidence(0.01) benign(0.087) TCGA-06-5416-01 11 5809928 5809928 G A OR52N1 Missense_Mutation p.A40V 0.18 deleterious(0.01) benign(0.103) TCGA-06-5416-01 11 58126268 58126268 T C OR5B17 Missense_Mutation p.Y92C 0.20 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-06-5416-01 11 58170627 58170627 C T OR5B3 Missense_Mutation p.E86K 0.21 deleterious_low_confidence(0.02) benign(0.002) TCGA-06-5416-01 11 58190465 58190465 G A OR5B2 Silent p.I90I 0.26 TCGA-06-5416-01 11 58391708 58391708 C A CNTF Missense_Mutation p.H106N 0.16 tolerated(0.45) probably_damaging(1) TCGA-06-5416-01 11 5878584 5878584 C T OR52E8 Missense_Mutation p.E117K 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 5878644 5878644 C A OR52E8 Nonsense_Mutation p.E97* 0.22 TCGA-06-5416-01 11 58892688 58892688 G A FAM111B Missense_Mutation p.R373Q 0.47 tolerated(1) benign(0.001) TCGA-06-5416-01 11 58978274 58978274 C T MPEG1 Missense_Mutation p.A689T 0.05 tolerated(0.53) benign(0.001) TCGA-06-5416-01 11 5905714 5905714 C T OR52E4 Silent p.F64F 0.44 TCGA-06-5416-01 11 5906097 5906097 C T OR52E4 Missense_Mutation p.A192V 0.23 tolerated(0.06) probably_damaging(0.909) TCGA-06-5416-01 11 59132370 59132370 C T OR5AN1 Silent p.L147L 0.46 TCGA-06-5416-01 11 59210950 59210950 G A OR5A1 Silent p.Q103Q 0.24 TCGA-06-5416-01 11 59211554 59211554 T C OR5A1 Missense_Mutation p.W305R 0.40 tolerated(0.57) benign(0.001) TCGA-06-5416-01 11 59245249 59245249 C T OR4D10 Missense_Mutation p.S116L 0.23 tolerated(0.06) benign(0.009) TCGA-06-5416-01 11 59245305 59245305 A G OR4D10 Missense_Mutation p.I135V 0.43 tolerated(0.12) benign(0.053) TCGA-06-5416-01 11 59245808 59245808 G T OR4D10 Missense_Mutation p.K302N 0.24 tolerated(0.31) benign(0.005) TCGA-06-5416-01 11 592657 592657 C T PHRF1 Silent p.C201C 0.46 TCGA-06-5416-01 11 59271867 59271867 C T OR4D11 Silent p.V273V 0.40 TCGA-06-5416-01 11 59344281 59344281 C A OSBP Missense_Mutation p.D760Y 0.23 deleterious(0) probably_damaging(0.92) TCGA-06-5416-01 11 59416986 59416986 T G PATL1 Missense_Mutation p.K561T 0.31 deleterious(0.01) possibly_damaging(0.503) TCGA-06-5416-01 11 59523090 59523090 T C STX3 Silent p.R4R 0.37 TCGA-06-5416-01 11 59560972 59560972 G A STX3 Missense_Mutation p.M220I 0.20 deleterious(0.01) benign(0.436) TCGA-06-5416-01 11 59610562 59610562 G A GIF Silent p.C103C 0.19 TCGA-06-5416-01 11 59611396 59611396 G A GIF Missense_Mutation p.A71V 0.28 tolerated(0.54) benign(0.093) TCGA-06-5416-01 11 59630098 59630098 G A TCN1 Silent p.I119I 0.37 TCGA-06-5416-01 11 6007406 6007406 C T OR52L1 Missense_Mutation p.R252Q 0.39 tolerated(0.1) benign(0.143) TCGA-06-5416-01 11 60075679 60075679 C A MS4A4A 3'UTR 0.22 TCGA-06-5416-01 11 60161417 60161417 T G MS4A7 3'UTR 0.23 TCGA-06-5416-01 11 60182929 60182929 C T MS4A14 Missense_Mutation p.S196L 0.40 tolerated(0.11) benign(0.33) TCGA-06-5416-01 11 60201347 60201347 C A MS4A5 Missense_Mutation p.S150Y 0.21 deleterious(0.03) benign(0.238) TCGA-06-5416-01 11 60201377 60201377 C T MS4A5 Missense_Mutation p.T160I 0.42 deleterious(0.03) possibly_damaging(0.795) TCGA-06-5416-01 11 6023314 6023314 C T OR56A4 Silent p.K355K 0.24 TCGA-06-5416-01 11 6024373 6024373 C T OR56A4 Missense_Mutation p.M2I 0.44 benign(0.043) TCGA-06-5416-01 11 60274257 60274257 C T MS4A12 Silent p.F215F 0.16 TCGA-06-5416-01 11 60470903 60470903 C T MS4A8 Missense_Mutation p.A91V 0.41 tolerated(0.9) benign(0.01) TCGA-06-5416-01 11 6048700 6048700 C T OR56A1 Missense_Mutation p.V79M 0.23 tolerated(0.18) possibly_damaging(0.781) TCGA-06-5416-01 11 605619 605619 C T PHRF1 Missense_Mutation p.S449F 0.37 deleterious(0.05) probably_damaging(0.923) TCGA-06-5416-01 11 60563058 60563058 C T MS4A10 Missense_Mutation p.L175F 0.50 tolerated(0.18) possibly_damaging(0.517) TCGA-06-5416-01 11 60610089 60610089 C T CCDC86 Silent p.Y164Y 0.24 TCGA-06-5416-01 11 60640645 60640645 C T ZP1 Missense_Mutation p.R375C 0.21 tolerated(0.08) benign(0.21) TCGA-06-5416-01 11 60702171 60702171 C T TMEM132A Missense_Mutation p.R592C 0.34 deleterious(0) possibly_damaging(0.832) TCGA-06-5416-01 11 60704602 60704602 C A SLC15A3 3'UTR 0.22 TCGA-06-5416-01 11 60776170 60776170 C T CD6 Missense_Mutation p.P212S 0.50 tolerated(0.05) possibly_damaging(0.61) TCGA-06-5416-01 11 60776283 60776283 C T CD6 Silent p.C249C 0.23 TCGA-06-5416-01 11 60885677 60885677 C T CD5 Missense_Mutation p.S42L 0.18 tolerated(0.07) possibly_damaging(0.534) TCGA-06-5416-01 11 61049299 61049299 C T VWCE Missense_Mutation p.R249Q 0.20 deleterious(0.01) possibly_damaging(0.883) TCGA-06-5416-01 11 61077271 61077271 C T DDB1 Missense_Mutation p.D855N 0.43 deleterious(0.01) possibly_damaging(0.786) TCGA-06-5416-01 11 61099112 61099112 C A DDB1 Missense_Mutation p.R38I 0.18 deleterious(0) benign(0.306) TCGA-06-5416-01 11 61165292 61165292 C T TMEM216 Silent p.S92S 0.21 TCGA-06-5416-01 11 61178566 61178566 C T CPSF7 Missense_Mutation p.R465H 0.23 tolerated(0.08) probably_damaging(0.977) TCGA-06-5416-01 11 61187501 61187501 T G CPSF7 Missense_Mutation p.K191T 0.49 tolerated(0.35) benign(0.366) TCGA-06-5416-01 11 61213514 61213514 C A SDHAF2 Missense_Mutation p.L158I 0.20 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 11 61249817 61249817 C T PPP1R32 Silent p.H48H 0.32 TCGA-06-5416-01 11 61252177 61252177 C T PPP1R32 Silent p.F133F 0.37 TCGA-06-5416-01 11 61404570 61404570 C A RPLP0P2 RNA 0.26 TCGA-06-5416-01 11 61488340 61488340 G T DAGLA Missense_Mutation p.Q95H 0.18 deleterious(0.03) probably_damaging(0.99) TCGA-06-5416-01 11 615139 615139 G A IRF7 Silent p.F60F 0.25 TCGA-06-5416-01 11 61545865 61545865 G T MYRF Missense_Mutation p.Q639H 0.18 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 11 61545940 61545940 G T MYRF Missense_Mutation p.E664D 0.18 tolerated(0.08) possibly_damaging(0.78) TCGA-06-5416-01 11 61724317 61724317 C A BEST1 Silent p.G101G 0.15 TCGA-06-5416-01 11 61727468 61727468 C T BEST1 Silent p.S291S 0.45 TCGA-06-5416-01 11 61730152 61730152 C T BEST1 Missense_Mutation p.A449V 0.19 deleterious_low_confidence(0.03) benign(0.104) TCGA-06-5416-01 11 618674 618674 C T CDHR5 Missense_Mutation p.G629S 0.21 tolerated(1) benign(0.209) TCGA-06-5416-01 11 6190748 6190748 A G OR52B2 Missense_Mutation p.I270T 0.23 deleterious(0) possibly_damaging(0.486) TCGA-06-5416-01 11 61908466 61908466 G A INCENP Missense_Mutation p.V515I 0.42 tolerated(0.3) unknown(0) TCGA-06-5416-01 11 619493 619493 G A CDHR5 Missense_Mutation p.A425V 0.39 tolerated(0.56) probably_damaging(0.972) TCGA-06-5416-01 11 61959675 61959675 C T SCGB1D1 Missense_Mutation p.T68M 0.20 tolerated(0.06) benign(0) TCGA-06-5416-01 11 62012276 62012276 C T SCGB1D2 3'UTR 0.46 TCGA-06-5416-01 11 62186578 62186578 C T SCGB1A1 Missense_Mutation p.A4V 0.39 deleterious(0.01) benign(0.014) TCGA-06-5416-01 11 62259291 62259291 G A AHNAK Missense_Mutation p.P119S 0.45 tolerated_low_confidence(0.31) benign(0) TCGA-06-5416-01 11 62284064 62284064 G A AHNAK 3'UTR 0.31 TCGA-06-5416-01 11 62287218 62287218 C T AHNAK Missense_Mutation p.D4891N 0.18 benign(0.105) TCGA-06-5416-01 11 62287629 62287629 C A AHNAK Nonsense_Mutation p.E4754* 0.19 TCGA-06-5416-01 11 62287783 62287783 C T AHNAK Silent p.A4702A 0.18 TCGA-06-5416-01 11 62288846 62288846 G T AHNAK Missense_Mutation p.S4348Y 0.52 probably_damaging(0.986) TCGA-06-5416-01 11 62291860 62291860 G A AHNAK Silent p.I3343I 0.44 TCGA-06-5416-01 11 62295067 62295067 G T AHNAK Silent p.V2274V 0.42 TCGA-06-5416-01 11 62297177 62297177 C A AHNAK Missense_Mutation p.S1571I 0.41 possibly_damaging(0.878) TCGA-06-5416-01 11 62299794 62299794 T C AHNAK Missense_Mutation p.M699V 0.21 benign(0.009) TCGA-06-5416-01 11 62300953 62300953 C T AHNAK Silent p.P312P 0.48 TCGA-06-5416-01 11 62301462 62301462 G A AHNAK Missense_Mutation p.L143F 0.18 possibly_damaging(0.804) TCGA-06-5416-01 11 6232257 6232257 C T C11orf42 Silent p.F329F 0.47 TCGA-06-5416-01 11 62342816 62342816 C A TUT1 Missense_Mutation p.G830V 0.17 tolerated(0.06) benign(0.049) TCGA-06-5416-01 11 62343370 62343370 C T TUT1 Silent p.T645T 0.18 TCGA-06-5416-01 11 62346474 62346474 G A TUT1 Missense_Mutation p.S278L 0.14 deleterious(0.01) possibly_damaging(0.639) TCGA-06-5416-01 11 62361370 62361370 C A MTA2 Nonsense_Mutation p.E662* 0.07 TCGA-06-5416-01 11 62362897 62362897 G A MTA2 Missense_Mutation p.A441V 0.23 tolerated(0.12) benign(0.008) TCGA-06-5416-01 11 62373176 62373176 C T EML3 Missense_Mutation p.D618N 0.46 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 11 62445256 62445256 C A UBXN1 Missense_Mutation p.K177N 0.39 tolerated(0.34) benign(0.234) TCGA-06-5416-01 11 6245408 6245408 C T FAM160A2 Missense_Mutation p.R70H 0.48 deleterious(0.04) benign(0.008) TCGA-06-5416-01 11 624733 624733 C A CDHR5 Splice_Site p.X29_splice 0.17 TCGA-06-5416-01 11 62502890 62502890 G A TTC9C Missense_Mutation p.R92Q 0.21 deleterious(0) possibly_damaging(0.904) TCGA-06-5416-01 11 62505798 62505798 G T TTC9C Nonsense_Mutation p.E154* 0.21 TCGA-06-5416-01 11 62521044 62521044 A G ZBTB3 Silent p.G81G 0.36 TCGA-06-5416-01 11 62549588 62549588 A C TAF6L Missense_Mutation p.K204Q 0.47 deleterious(0.01) benign(0.183) TCGA-06-5416-01 11 62591987 62591987 C T STX5 Missense_Mutation p.A244T 0.20 tolerated(0.16) benign(0.009) TCGA-06-5416-01 11 62603268 62603268 C A WDR74 Missense_Mutation p.D139Y 0.13 deleterious(0.01) benign(0.163) TCGA-06-5416-01 11 6261558 6261558 C T CNGA4 Silent p.V178V 0.19 TCGA-06-5416-01 11 6261681 6261681 C A CNGA4 Silent p.L219L 0.17 TCGA-06-5416-01 11 6265188 6265188 C A CNGA4 Missense_Mutation p.S426Y 0.34 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 11 6292621 6292621 C T CCKBR Missense_Mutation p.R398C 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 62931440 62931440 G T SLC22A25 Silent p.I500I 0.43 TCGA-06-5416-01 11 62985088 62985088 G T SLC22A25 Missense_Mutation p.A209D 0.42 deleterious(0.01) possibly_damaging(0.689) TCGA-06-5416-01 11 63149686 63149686 C A SLC22A9 Missense_Mutation p.S337Y 0.24 deleterious(0) probably_damaging(0.964) TCGA-06-5416-01 11 63175647 63175647 C T SLC22A9 Missense_Mutation p.T451I 0.18 tolerated(0.08) benign(0.081) TCGA-06-5416-01 11 63230901 63230901 G T HRASLS5 3'UTR 0.22 TCGA-06-5416-01 11 63277336 63277336 C A LGALS12 Silent p.I176I 0.47 TCGA-06-5416-01 11 63279230 63279230 C T LGALS12 Missense_Mutation p.P212S 0.48 deleterious(0.02) probably_damaging(0.988) TCGA-06-5416-01 11 63283131 63283131 G A LGALS12 Silent p.G271G 0.18 TCGA-06-5416-01 11 63283779 63283779 G A LGALS12 Missense_Mutation p.A310T 0.53 tolerated(0.17) benign(0.042) TCGA-06-5416-01 11 6340398 6340398 C T PRKCDBP Missense_Mutation p.A261T 0.19 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-06-5416-01 11 6340458 6340458 C T PRKCDBP Missense_Mutation p.E241K 0.24 tolerated_low_confidence(0.06) benign(0.004) TCGA-06-5416-01 11 63488068 63488068 C T RTN3 Silent p.S698S 0.18 TCGA-06-5416-01 11 63520079 63520079 C T RTN3 Missense_Mutation p.R947C 0.47 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 11 63679834 63679834 C A RCOR2 Missense_Mutation p.M400I 0.20 tolerated(0.19) benign(0.001) TCGA-06-5416-01 11 63992123 63992123 T C TRPT1 Missense_Mutation p.T134A 0.20 deleterious(0) probably_damaging(0.96) TCGA-06-5416-01 11 64024136 64024136 G T PLCB3 Missense_Mutation p.E304D 0.51 tolerated(0.06) benign(0.082) TCGA-06-5416-01 11 64054022 64054022 T C GPR137 Missense_Mutation p.V67A 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.728) TCGA-06-5416-01 11 64055871 64055871 C T GPR137 Silent p.F339F 0.44 TCGA-06-5416-01 11 64082342 64082342 G A ESRRA Missense_Mutation p.R234Q 0.51 tolerated(0.06) possibly_damaging(0.784) TCGA-06-5416-01 11 6424747 6424747 C A APBB1 Nonsense_Mutation p.E309* 0.26 TCGA-06-5416-01 11 64338458 64338458 A G SLC22A11 Missense_Mutation p.T533A 0.35 tolerated(0.68) benign(0.001) TCGA-06-5416-01 11 64366059 64366059 G A SLC22A12 Missense_Mutation p.R301K 0.12 tolerated(1) benign(0.014) TCGA-06-5416-01 11 64417929 64417929 C T NRXN2 Missense_Mutation p.D1034N 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 11 64417978 64417978 C A NRXN2 Missense_Mutation p.K1017N 0.07 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 11 64428266 64428266 T C NRXN2 Missense_Mutation p.D715G 0.34 deleterious(0) benign(0) TCGA-06-5416-01 11 64496461 64496461 G A RASGRP2 Missense_Mutation p.R549W 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 64502609 64502609 C T RASGRP2 Missense_Mutation p.A463T 0.24 tolerated(0.06) benign(0.06) TCGA-06-5416-01 11 64502628 64502628 C T RASGRP2 Silent p.G456G 0.19 TCGA-06-5416-01 11 64514447 64514447 G A PYGM Silent p.F775F 0.43 TCGA-06-5416-01 11 64517881 64517881 C T PYGM Missense_Mutation p.R715Q 0.40 tolerated(0.17) possibly_damaging(0.844) TCGA-06-5416-01 11 64525733 64525733 G T PYGM Silent p.I171I 0.16 TCGA-06-5416-01 11 64525919 64525919 G A PYGM Silent p.G138G 0.42 TCGA-06-5416-01 11 6452695 6452695 G A HPX Missense_Mutation p.R379W 0.26 deleterious(0) possibly_damaging(0.651) TCGA-06-5416-01 11 64536781 64536781 C A SF1 Missense_Mutation p.E356D 0.18 tolerated(0.06) benign(0.217) TCGA-06-5416-01 11 64557718 64557718 G A MAP4K2 Silent p.G730G 0.50 TCGA-06-5416-01 11 64564469 64564470 - G MAP4K2 Frame_Shift_Ins p.T465Nfs*52 0.20 TCGA-06-5416-01 11 64564805 64564805 C T MAP4K2 Silent p.P406P 0.22 TCGA-06-5416-01 11 64572066 64572066 T C MEN1 Missense_Mutation p.T530A 0.28 tolerated(0.83) benign(0.007) TCGA-06-5416-01 11 64577297 64577297 G A MEN1 Silent p.A95A 0.23 TCGA-06-5416-01 11 64726863 64726863 G T C11orf85 Silent p.P5P 0.22 TCGA-06-5416-01 11 64821962 64821962 C T NAALADL1 Silent p.Q284Q 0.22 TCGA-06-5416-01 11 64846507 64846507 T C CDCA5 3'UTR 0.26 TCGA-06-5416-01 11 64850964 64850964 G T CDCA5 Missense_Mutation p.A67D 0.43 tolerated(0.06) benign(0.393) TCGA-06-5416-01 11 64881008 64881008 G A TM7SF2 Missense_Mutation p.R182H 0.11 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 64884256 64884256 G A ZNHIT2 Silent p.V290V 0.45 TCGA-06-5416-01 11 64888233 64888233 G A FAU Missense_Mutation p.R108W 0.19 tolerated(0.11) benign(0.012) TCGA-06-5416-01 11 64898273 64898273 G A SYVN1 Missense_Mutation p.R322W 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 64939999 64939999 A T SPDYC Nonsense_Mutation p.K147* 0.42 TCGA-06-5416-01 11 64940670 64940670 G A SPDYC Silent p.P288P 0.42 TCGA-06-5416-01 11 64953475 64953475 G A CAPN1 Missense_Mutation p.E182K 0.59 deleterious(0.01) benign(0.247) TCGA-06-5416-01 11 64953512 64953512 C T CAPN1 Missense_Mutation p.A194V 0.20 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 11 64973961 64973961 A C CAPN1 Missense_Mutation p.K461Q 0.40 tolerated(0.32) benign(0.253) TCGA-06-5416-01 11 6499102 6499102 C T ARFIP2 Missense_Mutation p.R239Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 65061661 65061661 G T POLA2 Missense_Mutation p.D428Y 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 65064712 65064712 G T POLA2 Missense_Mutation p.C590F 0.26 deleterious(0.03) benign(0.396) TCGA-06-5416-01 11 65088410 65088410 G A CDC42EP2 Missense_Mutation p.R14H 0.47 deleterious(0.01) benign(0.107) TCGA-06-5416-01 11 65124297 65124297 G A TIGD3 Missense_Mutation p.A340T 0.46 tolerated(0.08) benign(0.205) TCGA-06-5416-01 11 65124320 65124320 C A TIGD3 Silent p.A347A 0.21 TCGA-06-5416-01 11 65124537 65124537 G A TIGD3 Missense_Mutation p.D420N 0.44 tolerated(0.45) benign(0.014) TCGA-06-5416-01 11 65154590 65154590 G A FRMD8 Missense_Mutation p.R28Q 0.53 deleterious(0.02) probably_damaging(0.992) TCGA-06-5416-01 11 65161820 65161820 G A FRMD8 Missense_Mutation p.E169K 0.29 tolerated(0.31) probably_damaging(0.993) TCGA-06-5416-01 11 6519905 6519905 C T DNHD1 Missense_Mutation p.R154W 0.32 benign(0.394) TCGA-06-5416-01 11 65268899 65268899 G T MALAT1 RNA 0.49 TCGA-06-5416-01 11 65268944 65268944 G A MALAT1 RNA 0.19 TCGA-06-5416-01 11 65273791 65273791 G A MALAT1 RNA 0.19 TCGA-06-5416-01 11 65293186 65293186 G A SCYL1 Splice_Site p.X84_splice 0.18 TCGA-06-5416-01 11 65293695 65293695 G A SCYL1 Missense_Mutation p.G159D 0.25 deleterious(0.04) probably_damaging(0.927) TCGA-06-5416-01 11 65294551 65294551 G A SCYL1 Missense_Mutation p.R271H 0.06 tolerated(0.15) benign(0.018) TCGA-06-5416-01 11 65305979 65305979 G A SCYL1 Missense_Mutation p.R790H 0.36 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 11 65341048 65341048 C T FAM89B Missense_Mutation p.T169I 0.37 tolerated(0.08) possibly_damaging(0.899) TCGA-06-5416-01 11 65350296 65350296 G A EHBP1L1 Missense_Mutation p.G718E 0.18 tolerated(1) benign(0) TCGA-06-5416-01 11 65360511 65360511 C T KCNK7 Missense_Mutation p.A297T 0.13 tolerated(0.48) unknown(0) TCGA-06-5416-01 11 65360792 65360792 C T KCNK7 Intron 0.45 TCGA-06-5416-01 11 65386015 65386015 G A PCNXL3 Silent p.R394R 0.24 TCGA-06-5416-01 11 65402514 65402514 G A PCNXL3 Missense_Mutation p.E1626K 0.24 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 11 65408733 65408733 G A SIPA1 Missense_Mutation p.R114Q 0.44 deleterious(0.01) benign(0.399) TCGA-06-5416-01 11 65423360 65423360 G T RELA Silent p.T308T 0.47 TCGA-06-5416-01 11 65425831 65425831 G T RELA Silent p.V268V 0.17 TCGA-06-5416-01 11 65481109 65481109 G A KAT5 Missense_Mutation p.E196K 0.40 tolerated(0.74) benign(0.248) TCGA-06-5416-01 11 65488187 65488187 G A RNASEH2C Missense_Mutation p.H15Y 0.30 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 11 65546811 65546811 C A AP5B1 Missense_Mutation p.G385C 0.55 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 11 65561647 65561647 G A OVOL1 Silent p.L82L 0.22 TCGA-06-5416-01 11 65562565 65562565 G A OVOL1 Missense_Mutation p.R186H 0.40 deleterious(0) probably_damaging(0.926) TCGA-06-5416-01 11 65620877 65620877 G A SNX32 3'UTR 0.23 TCGA-06-5416-01 11 65631981 65631981 G A MUS81 Missense_Mutation p.R358H 0.47 tolerated(0.06) benign(0.104) TCGA-06-5416-01 11 65765968 65765968 C T EIF1AD 3'UTR 0.45 TCGA-06-5416-01 11 65767547 65767547 C T EIF1AD Missense_Mutation p.R58H 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 65771217 65771217 C T BANF1 Nonsense_Mutation p.R82* 0.16 TCGA-06-5416-01 11 65780810 65780810 T C CST6 Missense_Mutation p.V130A 0.25 deleterious(0) benign(0.329) TCGA-06-5416-01 11 65788287 65788287 G A CATSPER1 Missense_Mutation p.A641V 0.27 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 11 65829404 65829404 C T SF3B2 Nonsense_Mutation p.R638* 0.32 TCGA-06-5416-01 11 65836312 65836312 T G SF3B2 3'UTR 0.27 TCGA-06-5416-01 11 6592208 6592208 C T DNHD1 Missense_Mutation p.A4489V 0.18 benign(0.007) TCGA-06-5416-01 11 66010643 66010643 C T PACS1 Silent p.I928I 0.23 TCGA-06-5416-01 11 66063052 66063052 C T TMEM151A Silent p.D445D 0.38 TCGA-06-5416-01 11 66082784 66082784 G A CD248 Missense_Mutation p.A572V 0.47 tolerated(0.63) benign(0) TCGA-06-5416-01 11 66103840 66103840 G T RIN1 Missense_Mutation p.P12T 0.19 tolerated_low_confidence(0.34) unknown(0) TCGA-06-5416-01 11 66114890 66114890 C T B3GNT1 Missense_Mutation p.D43N 0.27 tolerated(1) benign(0.003) TCGA-06-5416-01 11 66131778 66131778 C T SLC29A2 Missense_Mutation p.D393N 0.22 deleterious(0) probably_damaging(0.926) TCGA-06-5416-01 11 66189955 66189955 G A NPAS4 Missense_Mutation p.D121N 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 66190406 66190406 C T NPAS4 Missense_Mutation p.S231F 0.33 deleterious(0.01) probably_damaging(0.982) TCGA-06-5416-01 11 66192633 66192633 G A NPAS4 Missense_Mutation p.A758T 0.22 tolerated(0.08) probably_damaging(0.996) TCGA-06-5416-01 11 66204629 66204629 A G MRPL11 Missense_Mutation p.V140A 0.48 deleterious(0) possibly_damaging(0.611) TCGA-06-5416-01 11 6622574 6622574 C T RRP8 Missense_Mutation p.R241H 0.44 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 11 6622769 6622769 G A RRP8 Missense_Mutation p.S176F 0.18 deleterious(0.05) benign(0.015) TCGA-06-5416-01 11 6623420 6623420 G A RRP8 Missense_Mutation p.A42V 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 11 66243138 66243138 C T PELI3 Missense_Mutation p.R304C 0.43 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 11 66276580 66276580 C T DPP3 Missense_Mutation p.A691V 0.41 tolerated(0.05) benign(0.082) TCGA-06-5416-01 11 66283015 66283015 G A BBS1 Missense_Mutation p.R146Q 0.19 tolerated(0.77) benign(0.004) TCGA-06-5416-01 11 66299302 66299302 C T BBS1 Intron 0.20 TCGA-06-5416-01 11 6630125 6630125 G T ILK Missense_Mutation p.E153D 0.17 tolerated(0.56) benign(0) TCGA-06-5416-01 11 66358350 66358350 G A CCDC87 Nonsense_Mutation p.Q713* 0.45 TCGA-06-5416-01 11 66358632 66358632 C A CCDC87 Nonsense_Mutation p.E619* 0.21 TCGA-06-5416-01 11 6636518 6636518 G A TPP1 Missense_Mutation p.P437S 0.23 tolerated(0.09) probably_damaging(0.995) TCGA-06-5416-01 11 66393109 66393109 T C RBM14 Missense_Mutation p.Y588H 0.10 deleterious(0.02) unknown(0) TCGA-06-5416-01 11 6640134 6640134 G T TPP1 Silent p.G34G 0.46 TCGA-06-5416-01 11 66436495 66436495 C T RBM4B Missense_Mutation p.R227H 0.19 deleterious(0.02) benign(0.117) TCGA-06-5416-01 11 6645392 6645392 C A DCHS1 Missense_Mutation p.E2505D 0.28 tolerated(0.05) benign(0.317) TCGA-06-5416-01 11 6645541 6645541 C T DCHS1 Missense_Mutation p.D2456N 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 66458876 66458876 G A SPTBN2 Missense_Mutation p.A1815V 0.29 tolerated(0.14) benign(0.015) TCGA-06-5416-01 11 66460764 66460764 G A SPTBN2 Nonsense_Mutation p.R1583* 0.41 TCGA-06-5416-01 11 66460879 66460879 G A SPTBN2 Silent p.I1544I 0.26 TCGA-06-5416-01 11 66463936 66463936 G A SPTBN2 Missense_Mutation p.R1364C 0.46 tolerated(0.06) possibly_damaging(0.825) TCGA-06-5416-01 11 6647883 6647883 G T DCHS1 Silent p.V2088V 0.20 TCGA-06-5416-01 11 66555652 66555652 G A C11orf80 Missense_Mutation p.G182E 0.40 tolerated(0.11) benign(0.026) TCGA-06-5416-01 11 66613604 66613604 C T RCE1 3'UTR 0.41 TCGA-06-5416-01 11 66616571 66616571 G A PC Silent p.I1112I 0.44 TCGA-06-5416-01 11 66620019 66620019 G A PC Silent p.D572D 0.22 TCGA-06-5416-01 11 66802292 66802292 G A SYT12 Missense_Mutation p.A71T 0.18 tolerated_low_confidence(0.27) benign(0.01) TCGA-06-5416-01 11 66816182 66816182 C T SYT12 Missense_Mutation p.T407M 0.42 deleterious(0.03) benign(0.282) TCGA-06-5416-01 11 66834210 66834210 G A RHOD Silent p.G74G 0.41 TCGA-06-5416-01 11 66838917 66838917 G T RHOD Missense_Mutation p.M159I 0.15 tolerated(0.1) benign(0.386) TCGA-06-5416-01 11 67044742 67044742 G A ADRBK1 Splice_Site p.X38_splice 0.43 TCGA-06-5416-01 11 67049359 67049359 C T ADRBK1 Missense_Mutation p.A298V 0.22 deleterious(0.01) probably_damaging(0.972) TCGA-06-5416-01 11 67051768 67051768 C T ADRBK1 Silent p.F526F 0.21 TCGA-06-5416-01 11 67077539 67077539 G A SSH3 Missense_Mutation p.R471H 0.14 deleterious(0.02) possibly_damaging(0.899) TCGA-06-5416-01 11 67079064 67079064 C A SSH3 Silent p.V562V 0.19 TCGA-06-5416-01 11 67132837 67132837 C T CLCF1 Missense_Mutation p.V150I 0.45 tolerated(1) benign(0.13) TCGA-06-5416-01 11 67160985 67160985 C T RAD9A Missense_Mutation p.R85C 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 67177158 67177158 G C TBC1D10C Missense_Mutation p.G425A 0.30 tolerated(0.08) benign(0.002) TCGA-06-5416-01 11 67191211 67191211 C T CARNS1 Silent p.A664A 0.31 TCGA-06-5416-01 11 67219922 67219922 G A GPR152 Missense_Mutation p.R92W 0.18 deleterious(0.04) possibly_damaging(0.863) TCGA-06-5416-01 11 67223874 67223874 A G CABP4 Missense_Mutation p.M168V 0.20 deleterious(0) benign(0.331) TCGA-06-5416-01 11 67235032 67235032 G A TMEM134 Missense_Mutation p.S90F 0.21 deleterious(0) probably_damaging(0.975) TCGA-06-5416-01 11 67262553 67262553 G A PITPNM1 Missense_Mutation p.R876C 0.26 deleterious(0) possibly_damaging(0.876) TCGA-06-5416-01 11 67263722 67263722 G A PITPNM1 Silent p.F748F 0.50 TCGA-06-5416-01 11 67376087 67376087 G A NDUFV1 Missense_Mutation p.D74N 0.47 deleterious_low_confidence(0.01) benign(0.046) TCGA-06-5416-01 11 67379406 67379406 C A NDUFV1 Missense_Mutation p.F373L 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 11 67399346 67399346 A G TBX10 Silent p.A296A 0.33 TCGA-06-5416-01 11 67400524 67400524 G A TBX10 Silent p.F200F 0.22 TCGA-06-5416-01 11 67410135 67410135 C T ACY3 3'UTR 0.45 TCGA-06-5416-01 11 67430483 67430483 G A ALDH3B2 3'UTR 0.46 TCGA-06-5416-01 11 67430806 67430806 G T ALDH3B2 Silent p.T346T 0.29 TCGA-06-5416-01 11 67430829 67430829 C T ALDH3B2 Missense_Mutation p.D339N 0.33 deleterious(0.01) benign(0.365) TCGA-06-5416-01 11 67816570 67816570 C T TCIRG1 Silent p.L566L 0.46 TCGA-06-5416-01 11 67818059 67818059 C T TCIRG1 Missense_Mutation p.A781V 0.39 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 11 67821508 67821508 C T CHKA Missense_Mutation p.A441T 0.17 deleterious(0) probably_damaging(0.963) TCGA-06-5416-01 11 6789879 6789879 C T OR2AG2 Missense_Mutation p.A104T 0.16 tolerated(0.21) benign(0.185) TCGA-06-5416-01 11 68030291 68030291 C T C11orf24 Missense_Mutation p.A58T 0.20 tolerated(0.13) unknown(0) TCGA-06-5416-01 11 6806528 6806528 G A OR2AG1 Missense_Mutation p.R87H 0.19 tolerated(0.54) benign(0.001) TCGA-06-5416-01 11 68115569 68115569 G A LRP5 Missense_Mutation p.D116N 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 68343495 68343495 G T PPP6R3 Missense_Mutation p.R510M 0.19 deleterious(0) probably_damaging(0.914) TCGA-06-5416-01 11 68517921 68517921 C T MTL5 Missense_Mutation p.A70T 0.21 deleterious_low_confidence(0.04) benign(0.003) TCGA-06-5416-01 11 68549423 68549423 G A CPT1A Missense_Mutation p.P390S 0.45 tolerated(0.14) benign(0.051) TCGA-06-5416-01 11 68703875 68703875 C A IGHMBP2 Missense_Mutation p.L643I 0.45 tolerated(0.28) benign(0.188) TCGA-06-5416-01 11 68703903 68703903 C T IGHMBP2 Missense_Mutation p.S652F 0.39 deleterious(0.01) possibly_damaging(0.541) TCGA-06-5416-01 11 68704026 68704026 G C IGHMBP2 Missense_Mutation p.G693A 0.28 tolerated(0.67) benign(0.002) TCGA-06-5416-01 11 68707129 68707129 G T IGHMBP2 Missense_Mutation p.R971M 0.19 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 11 687927 687927 C A DEAF1 Missense_Mutation p.K216N 0.38 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 6942253 6942253 C A OR2D3 Nonsense_Mutation p.C7* 0.17 TCGA-06-5416-01 11 6942513 6942513 T C OR2D3 Missense_Mutation p.V94A 0.48 deleterious(0.03) possibly_damaging(0.493) TCGA-06-5416-01 11 6953755 6953755 G T ZNF215 Missense_Mutation p.K84N 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 69588197 69588197 G A FGF4 Silent p.N167N 0.06 TCGA-06-5416-01 11 6977009 6977009 G T ZNF215 Missense_Mutation p.W267C 0.21 deleterious(0.01) possibly_damaging(0.781) TCGA-06-5416-01 11 6977835 6977835 A G ZNF215 3'UTR 0.51 TCGA-06-5416-01 11 70017009 70017009 C T ANO1 Silent p.F738F 0.32 TCGA-06-5416-01 11 70033865 70033865 G A ANO1 Missense_Mutation p.D906N 0.20 tolerated(0.31) probably_damaging(1) TCGA-06-5416-01 11 70176421 70176421 G A PPFIA1 Missense_Mutation p.R358Q 0.22 tolerated(0.05) possibly_damaging(0.801) TCGA-06-5416-01 11 7021709 7021709 C T ZNF214 Missense_Mutation p.R402Q 0.39 tolerated(1) benign(0.395) TCGA-06-5416-01 11 70277321 70277321 A G CTTN Missense_Mutation p.T364A 0.14 tolerated(0.11) benign(0.004) TCGA-06-5416-01 11 70281896 70281896 G A CTTN Intron 0.17 TCGA-06-5416-01 11 703132 703132 C T TMEM80 Silent p.I163I 0.41 TCGA-06-5416-01 11 70319378 70319378 C A SHANK2 Nonsense_Mutation p.E1717* 0.36 TCGA-06-5416-01 11 70331556 70331556 C T SHANK2 Silent p.P1615P 0.25 TCGA-06-5416-01 11 70332498 70332498 G A SHANK2 Silent p.I1301I 0.45 TCGA-06-5416-01 11 70332638 70332638 G A SHANK2 Missense_Mutation p.R1255W 0.24 deleterious(0) possibly_damaging(0.689) TCGA-06-5416-01 11 70333532 70333532 G A SHANK2 Silent p.L957L 0.23 TCGA-06-5416-01 11 7064205 7064205 G A NLRP14 Silent p.K316K 0.21 TCGA-06-5416-01 11 7064382 7064382 T A NLRP14 Silent p.A375A 0.46 TCGA-06-5416-01 11 7070920 7070920 C T NLRP14 Silent p.F714F 0.21 TCGA-06-5416-01 11 7092451 7092451 C A NLRP14 Missense_Mutation p.A1065D 0.46 tolerated(0.53) benign(0.012) TCGA-06-5416-01 11 71146459 71146459 C T DHCR7 Missense_Mutation p.A464T 0.25 tolerated(0.55) benign(0.013) TCGA-06-5416-01 11 71164317 71164317 C A NADSYN1 5'UTR 0.61 TCGA-06-5416-01 11 71259712 71259712 C A KRTAP5-9 Nonsense_Mutation p.C3* 0.39 TCGA-06-5416-01 11 71259865 71259865 C T KRTAP5-9 Silent p.C54C 0.20 TCGA-06-5416-01 11 71276972 71276972 C T KRTAP5-10 Silent p.G113G 0.15 TCGA-06-5416-01 11 71277107 71277107 C T KRTAP5-10 Silent p.C158C 0.51 TCGA-06-5416-01 11 71277239 71277239 C A KRTAP5-10 Silent p.I202I 0.44 TCGA-06-5416-01 11 71714594 71714594 A G IL18BP 3'Flank 0.28 TCGA-06-5416-01 11 71715759 71715759 C T NUMA1 Missense_Mutation p.G1978D 0.52 benign(0.301) TCGA-06-5416-01 11 71720232 71720232 C A NUMA1 Splice_Site p.X1614_splice 0.23 TCGA-06-5416-01 11 71727238 71727238 C A NUMA1 Missense_Mutation p.E437D 0.21 benign(0.113) TCGA-06-5416-01 11 71809456 71809456 C T LAMTOR1 Missense_Mutation p.R91H 0.42 tolerated(0.07) benign(0.057) TCGA-06-5416-01 11 71850472 71850472 C T FOLR3 Missense_Mutation p.R189C 0.14 deleterious(0.03) possibly_damaging(0.479) TCGA-06-5416-01 11 71952320 71952320 G T PHOX2A Missense_Mutation p.F77L 0.22 tolerated(0.84) benign(0.009) TCGA-06-5416-01 11 72005688 72005688 C A CLPB Missense_Mutation p.E542D 0.47 tolerated(0.27) benign(0.047) TCGA-06-5416-01 11 72091384 72091384 C A CLPB Missense_Mutation p.G196V 0.45 tolerated(0.06) possibly_damaging(0.733) TCGA-06-5416-01 11 722150 722150 C T EPS8L2 Silent p.F348F 0.52 TCGA-06-5416-01 11 722425 722425 G A EPS8L2 Missense_Mutation p.D362N 0.19 deleterious(0.05) benign(0.016) TCGA-06-5416-01 11 72288493 72288493 C T PDE2A Missense_Mutation p.E921K 0.42 deleterious_low_confidence(0.01) benign(0.409) TCGA-06-5416-01 11 72288538 72288538 C T PDE2A Missense_Mutation p.G906S 0.47 deleterious(0.01) benign(0.088) TCGA-06-5416-01 11 72295918 72295918 C A PDE2A Nonsense_Mutation p.E453* 0.23 TCGA-06-5416-01 11 72300812 72300812 C T PDE2A Missense_Mutation p.E286K 0.33 tolerated(0.05) benign(0.121) TCGA-06-5416-01 11 72537237 72537237 G T ATG16L2 Missense_Mutation p.Q374H 0.23 tolerated(0.11) benign(0.033) TCGA-06-5416-01 11 72552499 72552499 C T FCHSD2 Missense_Mutation p.E686K 0.36 tolerated(0.41) benign(0.001) TCGA-06-5416-01 11 72553957 72553957 C T FCHSD2 Intron 0.19 TCGA-06-5416-01 11 727038 727038 G T EPS8L2 3'UTR 0.15 TCGA-06-5416-01 11 73021575 73021575 G A ARHGEF17 Missense_Mutation p.R631Q 0.40 tolerated_low_confidence(0.07) benign(0.007) TCGA-06-5416-01 11 73078850 73078850 C T ARHGEF17 3'UTR 0.24 TCGA-06-5416-01 11 7335157 7335157 C T SYT9 Silent p.I343I 0.23 TCGA-06-5416-01 11 73584320 73584320 G A COA4 Missense_Mutation p.A35V 0.25 tolerated(0.3) possibly_damaging(0.81) TCGA-06-5416-01 11 73681286 73681286 G A DNAJB13 3'UTR 0.39 TCGA-06-5416-01 11 73717292 73717292 G A UCP3 Missense_Mutation p.R87C 0.51 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 73941353 73941353 A G PPME1 Silent p.G154G 0.45 TCGA-06-5416-01 11 74015345 74015345 G A P4HA3 Missense_Mutation p.H105Y 0.46 tolerated(1) benign(0.004) TCGA-06-5416-01 11 74424496 74424496 T C CHRDL2 Missense_Mutation p.H75R 0.44 tolerated(0.87) benign(0.002) TCGA-06-5416-01 11 74799918 74799918 C T OR2AT4 Missense_Mutation p.V281M 0.17 deleterious(0.04) possibly_damaging(0.517) TCGA-06-5416-01 11 74800742 74800742 C T OR2AT4 Missense_Mutation p.C6Y 0.43 deleterious(0.02) benign(0.053) TCGA-06-5416-01 11 74880789 74880789 A G SLCO2B1 Missense_Mutation p.D254G 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 74915618 74915618 G A SLCO2B1 Missense_Mutation p.R708Q 0.33 deleterious_low_confidence(0.04) benign(0.124) TCGA-06-5416-01 11 74915627 74915627 C T SLCO2B1 3'UTR 0.17 TCGA-06-5416-01 11 74980000 74980000 G A ARRB1 Silent p.D342D 0.42 TCGA-06-5416-01 11 74985171 74985171 G A ARRB1 Silent p.L287L 0.19 TCGA-06-5416-01 11 7509604 7509604 G A OLFML1 Missense_Mutation p.E126K 0.42 tolerated(0.38) benign(0.004) TCGA-06-5416-01 11 75115230 75115230 C T RPS3 Missense_Mutation p.R189C 0.37 tolerated(0.12) benign(0.362) TCGA-06-5416-01 11 75133631 75133631 C T KLHL35 Missense_Mutation p.G582D 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-06-5416-01 11 75146674 75146674 C T GDPD5 Missense_Mutation p.D566N 0.38 tolerated(0.08) probably_damaging(0.932) TCGA-06-5416-01 11 75277887 75277887 G A SERPINH1 Missense_Mutation p.D165N 0.41 tolerated(0.19) probably_damaging(0.999) TCGA-06-5416-01 11 75298464 75298464 G A MAP6 Silent p.H694H 0.21 TCGA-06-5416-01 11 7531189 7531189 C A OLFML1 Missense_Mutation p.L327I 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 11 75319163 75319163 T C MAP6 Silent p.E370E 0.06 TCGA-06-5416-01 11 75501328 75501328 A C DGAT2 Missense_Mutation p.T116P 0.17 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 11 75501329 75501329 C G DGAT2 Missense_Mutation p.T116R 0.29 deleterious(0.02) possibly_damaging(0.807) TCGA-06-5416-01 11 75898158 75898158 A G WNT11 Missense_Mutation p.V339A 0.41 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 11 76061857 76061857 G A PRKRIR 3'UTR 0.42 TCGA-06-5416-01 11 76061863 76061863 T A PRKRIR 3'UTR 0.41 TCGA-06-5416-01 11 76063016 76063016 C T PRKRIR Missense_Mutation p.R393Q 0.21 tolerated(1) benign(0.001) TCGA-06-5416-01 11 76076939 76076939 C T PRKRIR Missense_Mutation p.R56Q 0.39 deleterious(0.04) benign(0.136) TCGA-06-5416-01 11 76076998 76076998 C A PRKRIR Missense_Mutation p.E36D 0.24 tolerated(0.13) benign(0.084) TCGA-06-5416-01 11 76224454 76224454 T C C11orf30 Missense_Mutation p.V463A 0.21 deleterious(0.01) possibly_damaging(0.857) TCGA-06-5416-01 11 76224466 76224466 A C C11orf30 Missense_Mutation p.K467T 0.45 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 11 76370927 76370927 C T LRRC32 Silent p.G570G 0.16 TCGA-06-5416-01 11 76371138 76371138 C A LRRC32 Missense_Mutation p.G500V 0.48 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 11 76507223 76507223 G T TSKU Missense_Mutation p.S188I 0.46 deleterious(0) probably_damaging(0.93) TCGA-06-5416-01 11 76727727 76727727 G A ACER3 Missense_Mutation p.R203Q 0.22 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 11 76751367 76751367 C T B3GNT6 Missense_Mutation p.R258C 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 76867991 76867991 G A MYO7A Missense_Mutation p.A226T 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-06-5416-01 11 76871261 76871261 G A MYO7A Missense_Mutation p.R378H 0.60 tolerated(0.22) possibly_damaging(0.569) TCGA-06-5416-01 11 76892490 76892490 G A MYO7A Missense_Mutation p.R920Q 0.21 tolerated(0.27) probably_damaging(0.996) TCGA-06-5416-01 11 76913402 76913402 C T MYO7A Nonsense_Mutation p.R1701* 0.50 TCGA-06-5416-01 11 76917245 76917245 G A MYO7A Missense_Mutation p.E1914K 0.32 deleterious(0.04) benign(0.086) TCGA-06-5416-01 11 77070009 77070009 C A PAK1 Missense_Mutation p.E177D 0.21 tolerated(0.45) benign(0.045) TCGA-06-5416-01 11 77301247 77301247 G A AQP11 Silent p.Q70Q 0.17 TCGA-06-5416-01 11 77336089 77336089 C T CLNS1A Missense_Mutation p.E131K 0.44 tolerated(0.07) benign(0.085) TCGA-06-5416-01 11 77377868 77377868 A C RSF1 3'UTR 0.39 TCGA-06-5416-01 11 77383144 77383144 G A RSF1 Missense_Mutation p.R1232C 0.45 deleterious(0) possibly_damaging(0.852) TCGA-06-5416-01 11 77612573 77612573 C A INTS4 Nonsense_Mutation p.E708* 0.22 TCGA-06-5416-01 11 77727906 77727906 G A KCTD14 Silent p.S167S 0.24 TCGA-06-5416-01 11 77774994 77774994 G A THRSP Missense_Mutation p.E23K 0.16 deleterious(0.01) benign(0.084) TCGA-06-5416-01 11 77825341 77825341 C T ALG8 Missense_Mutation p.R215Q 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 11 77884686 77884686 A G KCTD21 3'UTR 0.22 TCGA-06-5416-01 11 77920941 77920941 G T USP35 Missense_Mutation p.E680D 0.17 tolerated_low_confidence(0.3) unknown(0) TCGA-06-5416-01 11 77961218 77961218 C A GAB2 Missense_Mutation p.R202I 0.20 deleterious(0) benign(0.27) TCGA-06-5416-01 11 78279778 78279778 G A NARS2 Missense_Mutation p.S91F 0.37 deleterious(0.02) probably_damaging(0.948) TCGA-06-5416-01 11 78380916 78380916 G T TENM4 Silent p.I2158I 0.20 TCGA-06-5416-01 11 78381004 78381004 T C TENM4 Missense_Mutation p.D2129G 0.13 deleterious(0.01) benign(0.186) TCGA-06-5416-01 11 78383120 78383120 G T TENM4 Silent p.I1917I 0.23 TCGA-06-5416-01 11 78383196 78383196 T C TENM4 Missense_Mutation p.Y1892C 0.20 tolerated(0.11) benign(0.011) TCGA-06-5416-01 11 78419526 78419526 G A TENM4 Silent p.F1363F 0.19 TCGA-06-5416-01 11 78498036 78498036 G A TENM4 Missense_Mutation p.R758W 0.40 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 11 7981284 7981284 C A NLRP10 Missense_Mutation p.K625N 0.20 tolerated_low_confidence(0.54) benign(0) TCGA-06-5416-01 11 7981578 7981578 C T NLRP10 Silent p.S527S 0.19 TCGA-06-5416-01 11 7984906 7984906 C A NLRP10 Missense_Mutation p.R46I 0.19 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 11 8123142 8123142 C T TUB Silent p.F554F 0.21 TCGA-06-5416-01 11 8248593 8248593 G T LMO1 Missense_Mutation p.F98L 0.27 tolerated(0.12) benign(0.34) TCGA-06-5416-01 11 82877042 82877042 C T PCF11 Missense_Mutation p.S368L 0.15 deleterious(0) possibly_damaging(0.544) TCGA-06-5416-01 11 82880275 82880275 T C PCF11 Silent p.G966G 0.37 TCGA-06-5416-01 11 82880721 82880721 G T PCF11 Missense_Mutation p.R1115I 0.15 tolerated(0.06) possibly_damaging(0.757) TCGA-06-5416-01 11 82882899 82882899 G T PCF11 Nonsense_Mutation p.G1234* 0.12 TCGA-06-5416-01 11 82905757 82905757 G T ANKRD42 Missense_Mutation p.E15D 0.38 tolerated(0.16) benign(0.004) TCGA-06-5416-01 11 82917163 82917163 G T ANKRD42 Missense_Mutation p.A68S 0.41 tolerated(0.08) benign(0.249) TCGA-06-5416-01 11 82976919 82976919 G A CCDC90B Missense_Mutation p.R233C 0.19 tolerated(0.05) benign(0.262) TCGA-06-5416-01 11 82989785 82989785 A G CCDC90B Missense_Mutation p.V103A 0.43 deleterious(0.01) possibly_damaging(0.859) TCGA-06-5416-01 11 8414017 8414017 A C STK33 3'UTR 0.47 TCGA-06-5416-01 11 84245771 84245771 A G DLG2 Missense_Mutation p.Y121H 0.48 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-06-5416-01 11 85342831 85342831 T G TMEM126B Missense_Mutation p.F61C 0.18 deleterious(0.01) probably_damaging(0.935) TCGA-06-5416-01 11 85396552 85396552 C T CCDC89 Missense_Mutation p.E208K 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 11 85425648 85425648 A G SYTL2 Intron 0.29 TCGA-06-5416-01 11 85435834 85435834 G T SYTL2 Missense_Mutation p.L556I 0.21 tolerated(0.24) benign(0.015) TCGA-06-5416-01 11 85435838 85435838 C A SYTL2 Silent p.G554G 0.43 TCGA-06-5416-01 11 85437122 85437122 C A SYTL2 Missense_Mutation p.K126N 0.43 tolerated_low_confidence(0.06) benign(0.016) TCGA-06-5416-01 11 85468865 85468865 A T SYTL2 5'UTR 0.23 TCGA-06-5416-01 11 85779717 85779717 C T PICALM Missense_Mutation p.G36R 0.18 deleterious(0.01) probably_damaging(0.941) TCGA-06-5416-01 11 85979574 85979574 C T EED Nonsense_Mutation p.R313* 0.17 TCGA-06-5416-01 11 85989482 85989482 G A EED Missense_Mutation p.R414Q 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 86176240 86176240 A G ME3 Missense_Mutation p.F271S 0.43 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 11 86519328 86519328 G A PRSS23 Missense_Mutation p.E215K 0.19 tolerated(0.41) benign(0.008) TCGA-06-5416-01 11 86663135 86663135 G T FZD4 Silent p.I221I 0.12 TCGA-06-5416-01 11 86666067 86666067 G T FZD4 Missense_Mutation p.L21M 0.21 tolerated(0.07) unknown(0) TCGA-06-5416-01 11 8724150 8724150 G A ST5 Missense_Mutation p.R897C 0.46 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 11 8732736 8732736 G A ST5 Missense_Mutation p.L739F 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 11 8751539 8751539 C T ST5 Missense_Mutation p.R433K 0.21 tolerated(0.08) benign(0.184) TCGA-06-5416-01 11 87847040 87847040 C A RAB38 3'UTR 0.13 TCGA-06-5416-01 11 88068131 88068131 C T CTSC Missense_Mutation p.D98N 0.16 tolerated(0.57) benign(0.005) TCGA-06-5416-01 11 88911405 88911405 T C TYR Missense_Mutation p.F95S 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 11 88911776 88911776 G A TYR Missense_Mutation p.E219K 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 11 8936445 8936445 C A AKIP1 Missense_Mutation p.L126M 0.46 tolerated(0.21) benign(0.192) TCGA-06-5416-01 11 89395357 89395357 T G FOLH1B RNA 0.28 TCGA-06-5416-01 11 89531655 89531655 C T TRIM49 Silent p.Q334Q 0.13 TCGA-06-5416-01 11 89537394 89537394 G T TRIM49 Missense_Mutation p.L82I 0.25 tolerated(0.07) benign(0.126) TCGA-06-5416-01 11 89936490 89936490 C A CHORDC1 Missense_Mutation p.A259S 0.43 deleterious(0.01) probably_damaging(0.936) TCGA-06-5416-01 11 89956101 89956101 G A CHORDC1 Missense_Mutation p.R8W 0.13 tolerated(0.05) benign(0.083) TCGA-06-5416-01 11 9005414 9005414 G A NRIP3 Intron 0.23 TCGA-06-5416-01 11 9009672 9009672 G T NRIP3 Missense_Mutation p.S111Y 0.38 tolerated(0.42) possibly_damaging(0.682) TCGA-06-5416-01 11 90602303 90602303 A C MIR1261 RNA 0.41 TCGA-06-5416-01 11 9080858 9080858 G A SCUBE2 Missense_Mutation p.S361F 0.16 deleterious(0.01) possibly_damaging(0.891) TCGA-06-5416-01 11 9225612 9225612 C A DENND5A Missense_Mutation p.D182Y 0.16 deleterious(0.03) benign(0.089) TCGA-06-5416-01 11 92531151 92531151 C T FAT3 Missense_Mutation p.R1658C 0.41 probably_damaging(0.996) TCGA-06-5416-01 11 92531653 92531653 C T FAT3 Missense_Mutation p.T1825M 0.22 probably_damaging(0.993) TCGA-06-5416-01 11 92533793 92533793 C A FAT3 Missense_Mutation p.D2538E 0.41 probably_damaging(1) TCGA-06-5416-01 11 92564905 92564905 C T FAT3 Missense_Mutation p.S3200L 0.45 benign(0.407) TCGA-06-5416-01 11 92570929 92570929 A G FAT3 Missense_Mutation p.N3442S 0.15 possibly_damaging(0.752) TCGA-06-5416-01 11 92600076 92600076 C T FAT3 Missense_Mutation p.A3943V 0.45 probably_damaging(0.914) TCGA-06-5416-01 11 92881635 92881635 A G SLC36A4 3'UTR 0.56 TCGA-06-5416-01 11 93104262 93104262 G A CCDC67 Missense_Mutation p.S202N 0.45 tolerated(0.34) benign(0.002) TCGA-06-5416-01 11 93463711 93463711 A G KIAA1731 3'Flank 0.24 TCGA-06-5416-01 11 93466422 93466422 C T KIAA1731 3'Flank 0.12 TCGA-06-5416-01 11 93778917 93778917 G A HEPHL1 Silent p.T83T 0.25 TCGA-06-5416-01 11 93808450 93808450 C A HEPHL1 Missense_Mutation p.L539I 0.46 deleterious(0.04) possibly_damaging(0.69) TCGA-06-5416-01 11 93822052 93822052 G A HEPHL1 Missense_Mutation p.A738T 0.47 deleterious(0.03) probably_damaging(0.948) TCGA-06-5416-01 11 93845158 93845158 G T HEPHL1 3'UTR 0.18 TCGA-06-5416-01 11 93845249 93845249 G A HEPHL1 3'UTR 0.36 TCGA-06-5416-01 11 93912872 93912872 G A PANX1 Missense_Mutation p.R217H 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 11 94134232 94134232 T C GPR83 Missense_Mutation p.Y61C 0.20 deleterious(0.02) possibly_damaging(0.765) TCGA-06-5416-01 11 94200987 94200987 G A MRE11A Nonsense_Mutation p.R364* 0.20 TCGA-06-5416-01 11 94211965 94211965 C A MRE11A Missense_Mutation p.E160D 0.43 tolerated(0.3) benign(0.007) TCGA-06-5416-01 11 94310616 94310616 C T PIWIL4 Silent p.F157F 0.24 TCGA-06-5416-01 11 94326684 94326684 C T PIWIL4 Nonsense_Mutation p.Q343* 0.41 TCGA-06-5416-01 11 94554774 94554774 G A AMOTL1 Silent p.G400G 0.24 TCGA-06-5416-01 11 94730890 94730890 C T KDM4D Silent p.F118F 0.24 TCGA-06-5416-01 11 94732059 94732059 T G KDM4D Missense_Mutation p.L508R 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.569) TCGA-06-5416-01 11 94759051 94759051 G A KDM4E Silent p.P110P 0.30 TCGA-06-5416-01 11 94759285 94759285 G A KDM4E Nonsense_Mutation p.W188* 0.19 TCGA-06-5416-01 11 94862077 94862078 - A ENDOD1 Frame_Shift_Ins p.I282Nfs*6 0.40 TCGA-06-5416-01 11 94862560 94862560 C T ENDOD1 Silent p.F440F 0.21 TCGA-06-5416-01 11 94862700 94862700 G A ENDOD1 Missense_Mutation p.R487Q 0.18 tolerated(0.06) benign(0.018) TCGA-06-5416-01 11 94908667 94908667 C A SESN3 Nonsense_Mutation p.E463* 0.24 TCGA-06-5416-01 11 94917592 94917592 G T SESN3 Missense_Mutation p.P310H 0.23 deleterious(0.01) possibly_damaging(0.478) TCGA-06-5416-01 11 94918625 94918625 G T SESN3 Missense_Mutation p.S186Y 0.07 deleterious(0) benign(0.059) TCGA-06-5416-01 11 94924712 94924712 G T SESN3 Nonsense_Mutation p.Y66* 0.22 TCGA-06-5416-01 11 9546884 9546884 G T ZNF143 Missense_Mutation p.R595I 0.37 deleterious_low_confidence(0.02) possibly_damaging(0.548) TCGA-06-5416-01 11 95582944 95582944 C A MTMR2 Missense_Mutation p.S296I 0.44 tolerated(0.05) possibly_damaging(0.906) TCGA-06-5416-01 11 95598771 95598771 C T MTMR2 Missense_Mutation p.D86N 0.17 tolerated(0.32) benign(0.01) TCGA-06-5416-01 11 95718706 95718706 G A MAML2 Missense_Mutation p.A815V 0.24 unknown(0) TCGA-06-5416-01 11 96117894 96117894 T C CCDC82 Silent p.R6R 0.38 TCGA-06-5416-01 11 9812184 9812184 G A SBF2 Silent p.V1539V 0.18 TCGA-06-5416-01 11 9985425 9985425 C T SBF2 Silent p.S535S 0.12 TCGA-06-5416-01 12 100041964 100041964 C T FAM71C Silent p.C4C 0.20 TCGA-06-5416-01 12 100042145 100042145 C T FAM71C Missense_Mutation p.R65C 0.27 deleterious(0.03) benign(0.105) TCGA-06-5416-01 12 100452176 100452176 C T UHRF1BP1L Missense_Mutation p.G960D 0.18 deleterious(0.04) benign(0.008) TCGA-06-5416-01 12 100466483 100466483 C A UHRF1BP1L Nonsense_Mutation p.E506* 0.22 TCGA-06-5416-01 12 100685407 100685407 C A SCYL2 Missense_Mutation p.L102I 0.18 deleterious(0) possibly_damaging(0.71) TCGA-06-5416-01 12 100720423 100720423 C A SCYL2 Nonsense_Mutation p.C511* 0.11 TCGA-06-5416-01 12 101336209 101336209 C T ANO4 Nonsense_Mutation p.R83* 0.42 TCGA-06-5416-01 12 101480578 101480578 C T ANO4 Silent p.F524F 0.23 TCGA-06-5416-01 12 10150888 10150888 C T CLEC1B Silent p.G52G 0.36 TCGA-06-5416-01 12 101736287 101736287 A C UTP20 Missense_Mutation p.S1389R 0.19 tolerated(0.33) benign(0.027) TCGA-06-5416-01 12 101750828 101750828 G T UTP20 Nonsense_Mutation p.E1887* 0.24 TCGA-06-5416-01 12 101764920 101764920 G A UTP20 Missense_Mutation p.E2258K 0.19 tolerated(0.17) possibly_damaging(0.484) TCGA-06-5416-01 12 101777418 101777418 G A UTP20 Missense_Mutation p.R2676Q 0.24 deleterious(0) possibly_damaging(0.849) TCGA-06-5416-01 12 101871353 101871353 C T SPIC Silent p.D7D 0.13 TCGA-06-5416-01 12 102008289 102008289 C T MYBPC1 Missense_Mutation p.A14V 0.40 tolerated(0.16) benign(0.016) TCGA-06-5416-01 12 102025861 102025861 C T MYBPC1 Silent p.C142C 0.17 TCGA-06-5416-01 12 102036358 102036358 G A MYBPC1 Missense_Mutation p.S251N 0.42 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 12 102067285 102067285 G T MYBPC1 Missense_Mutation p.E891D 0.22 tolerated(0.71) benign(0.075) TCGA-06-5416-01 12 102130837 102130837 C A SYCP3 Missense_Mutation p.Q71H 0.12 tolerated(0.05) benign(0.068) TCGA-06-5416-01 12 102147180 102147180 C T GNPTAB Missense_Mutation p.R1191H 0.21 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 12 102163897 102163897 C T GNPTAB Missense_Mutation p.E396K 0.45 deleterious(0.04) benign(0.013) TCGA-06-5416-01 12 102295074 102295074 G T DRAM1 Missense_Mutation p.A69S 0.44 tolerated(0.05) benign(0.364) TCGA-06-5416-01 12 10233993 10233993 G A CLEC1A Silent p.L78L 0.18 TCGA-06-5416-01 12 102471146 102471146 C T NUP37 Missense_Mutation p.A226T 0.24 deleterious(0.01) possibly_damaging(0.786) TCGA-06-5416-01 12 102589109 102589109 G T PARPBP Missense_Mutation p.R428I 0.39 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 12 10270906 10270906 C A CLEC7A 3'UTR 0.33 TCGA-06-5416-01 12 10312604 10312604 C T OLR1 Missense_Mutation p.A233T 0.36 tolerated(0.89) benign(0.318) TCGA-06-5416-01 12 10313441 10313441 C A OLR1 Nonsense_Mutation p.E170* 0.44 TCGA-06-5416-01 12 10319525 10319525 C T OLR1 Silent p.E70E 0.48 TCGA-06-5416-01 12 10342693 10342693 C A TMEM52B Missense_Mutation p.P149H 0.22 deleterious(0.01) probably_damaging(0.913) TCGA-06-5416-01 12 1036344 1036344 T C RAD52 Missense_Mutation p.E145G 0.19 deleterious(0) probably_damaging(0.938) TCGA-06-5416-01 12 10370742 10370742 T C GABARAPL1 Splice_Site p.X57_splice 0.49 TCGA-06-5416-01 12 104100710 104100710 C T STAB2 Silent p.S1379S 0.18 TCGA-06-5416-01 12 104131488 104131488 G A STAB2 Missense_Mutation p.G1876D 0.24 deleterious(0) probably_damaging(0.965) TCGA-06-5416-01 12 104139038 104139038 C T STAB2 Missense_Mutation p.S2040L 0.49 tolerated(0.69) benign(0) TCGA-06-5416-01 12 104153018 104153018 G C STAB2 Silent p.L2405L 0.28 TCGA-06-5416-01 12 104698289 104698289 C T EID3 Missense_Mutation p.R193C 0.47 tolerated(0.08) benign(0.022) TCGA-06-5416-01 12 105151222 105151222 G A CHST11 Missense_Mutation p.D234N 0.42 tolerated(0.05) possibly_damaging(0.73) TCGA-06-5416-01 12 105440735 105440735 G T ALDH1L2 Missense_Mutation p.P567T 0.45 deleterious(0.02) probably_damaging(0.922) TCGA-06-5416-01 12 105538170 105538170 G T KIAA1033 Missense_Mutation p.D706Y 0.19 deleterious(0) probably_damaging(0.931) TCGA-06-5416-01 12 105540880 105540880 G A KIAA1033 Missense_Mutation p.A824T 0.27 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 12 105551081 105551081 G T KIAA1033 Nonsense_Mutation p.E965* 0.21 TCGA-06-5416-01 12 10560140 10560140 A G KLRC4 3'UTR 0.33 TCGA-06-5416-01 12 10573004 10573004 G T KLRC3 Missense_Mutation p.S49Y 0.15 deleterious(0) possibly_damaging(0.854) TCGA-06-5416-01 12 106461686 106461686 G A NUAK1 Missense_Mutation p.R294W 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 106461728 106461728 G A NUAK1 Nonsense_Mutation p.R280* 0.46 TCGA-06-5416-01 12 106708187 106708187 G T TCP11L2 Missense_Mutation p.R70M 0.24 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 12 106729901 106729901 A G TCP11L2 Missense_Mutation p.N351S 0.43 tolerated(1) benign(0.124) TCGA-06-5416-01 12 106740079 106740079 T G TCP11L2 Missense_Mutation p.L444R 0.37 tolerated(0.54) possibly_damaging(0.691) TCGA-06-5416-01 12 106770199 106770199 C T POLR3B Missense_Mutation p.A156V 0.44 tolerated(0.08) benign(0.089) TCGA-06-5416-01 12 106890644 106890644 C T POLR3B Missense_Mutation p.R978C 0.43 deleterious(0) possibly_damaging(0.849) TCGA-06-5416-01 12 106977061 106977061 G T RP11-144F15.1 Intron 0.20 TCGA-06-5416-01 12 107126000 107126000 C T RFX4 Nonsense_Mutation p.R491* 0.27 TCGA-06-5416-01 12 107391751 107391752 - A CRY1 Frame_Shift_Ins p.H411Sfs*10 0.22 TCGA-06-5416-01 12 107393758 107393758 G A CRY1 Nonsense_Mutation p.R263* 0.19 TCGA-06-5416-01 12 10774501 10774501 C A STYK1 Missense_Mutation p.K346N 0.37 deleterious(0) probably_damaging(0.909) TCGA-06-5416-01 12 108012109 108012109 C T BTBD11 Silent p.S802S 0.17 TCGA-06-5416-01 12 108034099 108034099 C A BTBD11 Missense_Mutation p.L917I 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 12 108051470 108051470 C T BTBD11 Missense_Mutation p.S1097L 0.48 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 12 108082460 108082460 G A PWP1 Missense_Mutation p.R67H 0.49 tolerated(0.14) benign(0.092) TCGA-06-5416-01 12 108154282 108154282 C T PRDM4 Missense_Mutation p.R4K 0.39 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-06-5416-01 12 108169196 108169196 C T ASCL4 Silent p.S68S 0.24 TCGA-06-5416-01 12 10854713 10854713 C T YBX3 Missense_Mutation p.R300Q 0.43 deleterious(0.04) probably_damaging(0.99) TCGA-06-5416-01 12 108685545 108685545 C T CMKLR1 3'UTR 0.21 TCGA-06-5416-01 12 108686472 108686472 C T CMKLR1 Missense_Mutation p.V90I 0.49 tolerated(0.68) benign(0.013) TCGA-06-5416-01 12 108926008 108926008 C A SART3 Missense_Mutation p.E553D 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 12 109017718 109017718 C A SELPLG Missense_Mutation p.Q138H 0.43 tolerated(0.15) unknown(0) TCGA-06-5416-01 12 109283265 109283265 A C DAO Silent p.T110T 0.45 TCGA-06-5416-01 12 109530593 109530593 C A ALKBH2 5'UTR 0.18 TCGA-06-5416-01 12 109577435 109577435 G A ACACB Silent p.E75E 0.43 TCGA-06-5416-01 12 10958960 10958960 G T TAS2R8 Missense_Mutation p.S207Y 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 12 109614025 109614025 G A ACACB Missense_Mutation p.R465Q 0.05 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 10962507 10962507 G T TAS2R9 Silent p.I56I 0.25 TCGA-06-5416-01 12 109629711 109629711 G A ACACB Silent p.A785A 0.17 TCGA-06-5416-01 12 109670534 109670534 C A ACACB Missense_Mutation p.F1354L 0.39 tolerated(0.34) benign(0.026) TCGA-06-5416-01 12 109670597 109670597 C T ACACB Silent p.F1375F 0.38 TCGA-06-5416-01 12 109678885 109678885 C T ACACB Silent p.I1607I 0.43 TCGA-06-5416-01 12 109684075 109684075 G A ACACB Missense_Mutation p.R1798H 0.41 tolerated(0.08) benign(0.002) TCGA-06-5416-01 12 109704053 109704053 A C ACACB Missense_Mutation p.E2421D 0.40 tolerated(0.5) benign(0) TCGA-06-5416-01 12 109719290 109719290 C T FOXN4 Missense_Mutation p.D406N 0.28 deleterious(0.02) benign(0.209) TCGA-06-5416-01 12 10978138 10978138 G A TAS2R10 Missense_Mutation p.A244V 0.21 tolerated(0.72) benign(0.034) TCGA-06-5416-01 12 109826626 109826626 C T MYO1H Missense_Mutation p.R35C 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 109874318 109874318 A G MYO1H Silent p.K706K 0.44 TCGA-06-5416-01 12 109889598 109889598 C A KCTD10 Silent p.R248R 0.21 TCGA-06-5416-01 12 109927842 109927842 C A UBE3B Intron 0.16 TCGA-06-5416-01 12 110019232 110019232 C T MVK Missense_Mutation p.S135L 0.40 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 110226256 110226256 G A TRPV4 Silent p.G719G 0.46 TCGA-06-5416-01 12 110232177 110232177 A G TRPV4 Missense_Mutation p.V483A 0.19 deleterious(0.02) benign(0.081) TCGA-06-5416-01 12 110370915 110370915 C A GIT2 Missense_Mutation p.K716N 0.21 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 12 110426817 110426817 C T GIT2 Missense_Mutation p.R119H 0.41 deleterious(0.01) benign(0.258) TCGA-06-5416-01 12 110467400 110467400 C T ANKRD13A Silent p.F398F 0.19 TCGA-06-5416-01 12 110641690 110641690 G T IFT81 Nonsense_Mutation p.E527* 0.21 TCGA-06-5416-01 12 110734428 110734428 G A ATP2A2 Missense_Mutation p.E117K 0.18 deleterious(0.03) possibly_damaging(0.798) TCGA-06-5416-01 12 110764280 110764280 T G ATP2A2 Silent p.S210S 0.49 TCGA-06-5416-01 12 110777477 110777477 G T ATP2A2 Missense_Mutation p.R571I 0.18 tolerated(0.14) benign(0.02) TCGA-06-5416-01 12 11091394 11091394 G A TAS2R14 Missense_Mutation p.S138L 0.20 tolerated(1) benign(0) TCGA-06-5416-01 12 11091646 11091646 G A TAS2R14 Missense_Mutation p.S54F 0.48 deleterious(0.05) probably_damaging(0.942) TCGA-06-5416-01 12 110950583 110950583 G T RAD9B Splice_Site p.X130_splice 0.53 TCGA-06-5416-01 12 110968520 110968520 G A RAD9B Intron 0.46 TCGA-06-5416-01 12 111168431 111168431 T C PPP1CC Silent p.L107L 0.44 TCGA-06-5416-01 12 111296501 111296501 A C CCDC63 Silent p.R97R 0.26 TCGA-06-5416-01 12 111321859 111321859 G T CCDC63 Missense_Mutation p.K293N 0.18 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 12 111352044 111352044 G A MYL2 Missense_Mutation p.P74S 0.44 tolerated(0.27) benign(0.019) TCGA-06-5416-01 12 111356947 111356947 G T MYL2 Missense_Mutation p.F18L 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 12 11149662 11149662 A G TAS2R20 Silent p.Y271Y 0.49 TCGA-06-5416-01 12 11150145 11150145 G A TAS2R20 Silent p.I110I 0.40 TCGA-06-5416-01 12 11174304 11174304 G A TAS2R19 Silent p.T289T 0.20 TCGA-06-5416-01 12 111748088 111748088 C T CUX2 Missense_Mutation p.A501V 0.19 deleterious(0.04) benign(0.049) TCGA-06-5416-01 12 111772438 111772438 C T CUX2 Silent p.I1040I 0.44 TCGA-06-5416-01 12 111779595 111779595 C T CUX2 Missense_Mutation p.R1133C 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 11183674 11183674 G T TAS2R31 Silent p.V87V 0.28 TCGA-06-5416-01 12 111893896 111893896 C T ATXN2 Silent p.T1227T 0.06 TCGA-06-5416-01 12 111908485 111908485 C T ATXN2 Silent p.A1020A 0.22 TCGA-06-5416-01 12 112153665 112153665 T C ACAD10 Silent p.N328N 0.22 TCGA-06-5416-01 12 112182802 112182802 C A ACAD10 Silent p.A721A 0.17 TCGA-06-5416-01 12 112247500 112247500 C A ALDH2 3'UTR 0.20 TCGA-06-5416-01 12 112381103 112381103 T G TMEM116 Missense_Mutation p.K94T 0.47 deleterious(0) possibly_damaging(0.792) TCGA-06-5416-01 12 112480936 112480936 A G NAA25 Missense_Mutation p.F777S 0.23 deleterious(0.01) benign(0.424) TCGA-06-5416-01 12 112498100 112498100 G A NAA25 Missense_Mutation p.A474V 0.39 tolerated(1) benign(0) TCGA-06-5416-01 12 112512534 112512534 C T NAA25 Missense_Mutation p.D271N 0.21 tolerated(0.14) probably_damaging(0.976) TCGA-06-5416-01 12 112578852 112578852 C A TRAFD1 Missense_Mutation p.S156Y 0.23 tolerated(0.05) possibly_damaging(0.6) TCGA-06-5416-01 12 112609003 112609003 C A HECTD4 Missense_Mutation p.E3804D 0.35 probably_damaging(0.961) TCGA-06-5416-01 12 112610648 112610648 A G HECTD4 Missense_Mutation p.V3725A 0.17 benign(0) TCGA-06-5416-01 12 112622474 112622474 G T HECTD4 Silent p.I3286I 0.41 TCGA-06-5416-01 12 112669442 112669442 G T HECTD4 Silent p.L1879L 0.14 TCGA-06-5416-01 12 112673009 112673009 A G HECTD4 Silent p.S1783S 0.43 TCGA-06-5416-01 12 112702015 112702015 G T HECTD4 Missense_Mutation p.A730D 0.42 benign(0.196) TCGA-06-5416-01 12 112892398 112892398 C T PTPN11 Missense_Mutation p.R186W 0.19 deleterious(0.01) possibly_damaging(0.897) TCGA-06-5416-01 12 112919946 112919946 C T PTPN11 Silent p.N387N 0.44 TCGA-06-5416-01 12 113285645 113285645 C T RPH3A Silent p.I76I 0.18 TCGA-06-5416-01 12 113306421 113306421 C A RPH3A Intron 0.21 TCGA-06-5416-01 12 113333656 113333656 C T RPH3A Silent p.I644I 0.38 TCGA-06-5416-01 12 113384669 113384669 G A OAS3 Missense_Mutation p.R253Q 0.41 tolerated(0.18) benign(0.18) TCGA-06-5416-01 12 11339496 11339496 T G TAS2R42 Missense_Mutation p.E16D 0.43 tolerated(0.1) probably_damaging(0.991) TCGA-06-5416-01 12 113402111 113402111 C T OAS3 Silent p.R767R 0.20 TCGA-06-5416-01 12 113416516 113416516 G A OAS2 Missense_Mutation p.D35N 0.19 tolerated(0.44) benign(0.006) TCGA-06-5416-01 12 113435486 113435486 C A OAS2 Silent p.I263I 0.20 TCGA-06-5416-01 12 113447078 113447078 A G OAS2 Intron 0.47 TCGA-06-5416-01 12 113537814 113537814 G T RASAL1 Missense_Mutation p.L781I 0.23 tolerated(0.2) benign(0.06) TCGA-06-5416-01 12 113617047 113617047 G A DDX54 Silent p.F155F 0.12 TCGA-06-5416-01 12 113698272 113698272 A G TPCN1 Missense_Mutation p.Y143C 0.39 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 12 113715088 113715088 G A TPCN1 Missense_Mutation p.R440H 0.22 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 12 113730761 113730761 G T TPCN1 Missense_Mutation p.E784D 0.18 tolerated(0.09) benign(0.311) TCGA-06-5416-01 12 113759120 113759120 G A SLC8B1 Missense_Mutation p.R64C 0.24 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 12 113824843 113824843 G A PLBD2 Missense_Mutation p.R463Q 0.23 tolerated(0.17) benign(0.06) TCGA-06-5416-01 12 113830906 113830906 G A SDS Missense_Mutation p.A276V 0.45 tolerated(0.34) benign(0.085) TCGA-06-5416-01 12 114386653 114386653 G A RBM19 Missense_Mutation p.L421F 0.39 deleterious(0) possibly_damaging(0.497) TCGA-06-5416-01 12 115110087 115110087 G A TBX3 Silent p.F597F 0.67 TCGA-06-5416-01 12 116408576 116408576 C A MED13L Splice_Site p.X1964_splice 0.15 TCGA-06-5416-01 12 116421179 116421179 C T MED13L Silent p.S1566S 0.23 TCGA-06-5416-01 12 116421322 116421322 G T MED13L Missense_Mutation p.L1519I 0.20 deleterious(0.01) unknown(0) TCGA-06-5416-01 12 116428955 116428955 A G MED13L Silent p.N1268N 0.45 TCGA-06-5416-01 12 116443739 116443739 C T MED13L Missense_Mutation p.D802N 0.16 deleterious(0.01) unknown(0) TCGA-06-5416-01 12 116446773 116446773 C A MED13L Missense_Mutation p.R482I 0.19 deleterious(0) unknown(0) TCGA-06-5416-01 12 117013670 117013670 C T MAP1LC3B2 5'UTR 0.12 TCGA-06-5416-01 12 117273791 117273791 C T RNFT2 Silent p.G353G 0.19 TCGA-06-5416-01 12 117290604 117290604 A G RNFT2 3'Flank 0.61 TCGA-06-5416-01 12 117665373 117665373 G T NOS1 Missense_Mutation p.S1194Y 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 117715836 117715836 G A NOS1 Missense_Mutation p.A531V 0.44 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 12 117923436 117923436 G A KSR2 Silent p.V760V 0.40 TCGA-06-5416-01 12 118105376 118105376 C T KSR2 Silent p.P358P 0.20 TCGA-06-5416-01 12 118105461 118105461 G A KSR2 Missense_Mutation p.A330V 0.12 tolerated(0.38) benign(0) TCGA-06-5416-01 12 118472083 118472083 C T WSB2 Missense_Mutation p.R378Q 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 12 118511739 118511739 C T VSIG10 Silent p.T328T 0.22 TCGA-06-5416-01 12 118517177 118517177 G A VSIG10 Missense_Mutation p.S300L 0.49 tolerated(0.34) benign(0.009) TCGA-06-5416-01 12 118828961 118828961 G A SUDS3 Missense_Mutation p.E131K 0.17 deleterious(0) possibly_damaging(0.649) TCGA-06-5416-01 12 119540061 119540061 C T SRRM4 Missense_Mutation p.P51L 0.13 tolerated_low_confidence(0.96) unknown(0) TCGA-06-5416-01 12 119583259 119583259 C T SRRM4 Missense_Mutation p.S282F 0.15 deleterious_low_confidence(0.02) probably_damaging(0.983) TCGA-06-5416-01 12 119588961 119588961 C T SRRM4 Nonsense_Mutation p.R406* 0.14 TCGA-06-5416-01 12 119772851 119772851 G A CCDC60 5'UTR 0.22 TCGA-06-5416-01 12 119772945 119772945 C A CCDC60 5'UTR 0.37 TCGA-06-5416-01 12 119968853 119968853 C T CCDC60 Silent p.I512I 0.21 TCGA-06-5416-01 12 12006417 12006417 C A ETV6 Missense_Mutation p.L129I 0.08 tolerated(0.26) benign(0.003) TCGA-06-5416-01 12 120118100 120118100 C T PRKAB1 Silent p.Y261Y 0.40 TCGA-06-5416-01 12 120214174 120214174 C T CIT Silent p.A625A 0.38 TCGA-06-5416-01 12 120270578 120270578 C A CIT Missense_Mutation p.K250N 0.39 tolerated(0.08) benign(0.005) TCGA-06-5416-01 12 120575379 120575379 C A GCN1L1 Missense_Mutation p.E2211D 0.16 benign(0.155) TCGA-06-5416-01 12 120592829 120592829 G A GCN1L1 Silent p.L1216L 0.40 TCGA-06-5416-01 12 120606058 120606058 C A GCN1L1 Missense_Mutation p.K522N 0.38 possibly_damaging(0.57) TCGA-06-5416-01 12 120649708 120649708 G T PXN 3'UTR 0.21 TCGA-06-5416-01 12 120654424 120654424 C T PXN Intron 0.14 TCGA-06-5416-01 12 120657041 120657041 C A PXN Intron 0.47 TCGA-06-5416-01 12 120660367 120660367 G A PXN Missense_Mutation p.S227F 0.23 deleterious(0.02) probably_damaging(0.987) TCGA-06-5416-01 12 120750759 120750759 C T SIRT4 Missense_Mutation p.P289S 0.51 tolerated(0.09) benign(0.04) TCGA-06-5416-01 12 120791106 120791106 G A MSI1 Silent p.F243F 0.15 TCGA-06-5416-01 12 120882545 120882545 A C TRIAP1 3'UTR 0.15 TCGA-06-5416-01 12 121002988 121002988 C T RNF10 Silent p.F593F 0.16 TCGA-06-5416-01 12 121004724 121004724 C T RNF10 Missense_Mutation p.T661I 0.18 tolerated(0.11) benign(0.001) TCGA-06-5416-01 12 121017061 121017061 C T POP5 3'UTR 0.49 TCGA-06-5416-01 12 121097688 121097688 C A CABP1 Nonsense_Mutation p.S221* 0.41 TCGA-06-5416-01 12 121098115 121098115 G A CABP1 Missense_Mutation p.E268K 0.14 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 12 121132727 121132727 G A MLEC Missense_Mutation p.S172N 0.41 tolerated(0.18) benign(0.025) TCGA-06-5416-01 12 121175684 121175684 G A ACADS Missense_Mutation p.E173K 0.49 tolerated(0.3) benign(0.282) TCGA-06-5416-01 12 121431486 121431486 G T HNF1A Missense_Mutation p.E230D 0.19 deleterious(0.03) benign(0.018) TCGA-06-5416-01 12 121469315 121469315 C T OASL Missense_Mutation p.R196K 0.20 tolerated(0.37) benign(0.136) TCGA-06-5416-01 12 121613190 121613190 G T P2RX7 Splice_Site p.X294_splice 0.20 TCGA-06-5416-01 12 121670862 121670862 G T P2RX4 Missense_Mutation p.E385D 0.21 tolerated(0.47) benign(0.015) TCGA-06-5416-01 12 121735468 121735468 T C CAMKK2 5'UTR 0.33 TCGA-06-5416-01 12 121773376 121773376 C T ANAPC5 Missense_Mutation p.A304T 0.18 deleterious(0.01) possibly_damaging(0.728) TCGA-06-5416-01 12 121947617 121947617 C T KDM2B Missense_Mutation p.R467Q 0.25 tolerated(0.56) benign(0.001) TCGA-06-5416-01 12 121987491 121987491 C T KDM2B Silent p.E150E 0.19 TCGA-06-5416-01 12 122217290 122217290 G A TMEM120B 3'UTR 0.35 TCGA-06-5416-01 12 122285092 122285092 A C HPD Missense_Mutation p.F209V 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 12 122337608 122337608 G A PSMD9 Missense_Mutation p.D104N 0.36 deleterious(0.05) benign(0.349) TCGA-06-5416-01 12 12240293 12240293 G A BCL2L14 Missense_Mutation p.V194M 0.21 tolerated(0.16) benign(0.03) TCGA-06-5416-01 12 122437815 122437815 G A WDR66 Missense_Mutation p.R1067Q 0.43 tolerated(0.37) benign(0.001) TCGA-06-5416-01 12 122617871 122617871 C A MLXIP Intron 0.18 TCGA-06-5416-01 12 122656886 122656886 T C IL31 3'UTR 0.35 TCGA-06-5416-01 12 122677363 122677363 C T LRRC43 Silent p.I387I 0.25 TCGA-06-5416-01 12 122684832 122684832 G A LRRC43 Silent p.K482K 0.22 TCGA-06-5416-01 12 122691106 122691106 G A B3GNT4 Missense_Mutation p.R103Q 0.43 deleterious(0.02) probably_damaging(0.982) TCGA-06-5416-01 12 122691960 122691960 G T B3GNT4 3'UTR 0.55 TCGA-06-5416-01 12 122710606 122710606 G T DIABLO 5'UTR 0.50 TCGA-06-5416-01 12 122734498 122734498 C T VPS33A Missense_Mutation p.R232Q 0.35 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 12 122812505 122812505 C T CLIP1 Missense_Mutation p.D1080N 0.51 tolerated(0.14) benign(0.382) TCGA-06-5416-01 12 122821194 122821194 T G CLIP1 Missense_Mutation p.K851N 0.42 tolerated(0.07) possibly_damaging(0.835) TCGA-06-5416-01 12 122826199 122826199 C A CLIP1 Missense_Mutation p.D518Y 0.20 deleterious(0) possibly_damaging(0.907) TCGA-06-5416-01 12 12284861 12284861 G A LRP6 Silent p.C1288C 0.50 TCGA-06-5416-01 12 123001861 123001861 C A RSRC2 Missense_Mutation p.R172I 0.44 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 12 12300324 12300324 G A LRP6 Nonsense_Mutation p.R1125* 0.42 TCGA-06-5416-01 12 123006722 123006722 C T RSRC2 Missense_Mutation p.R44Q 0.42 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-06-5416-01 12 123093930 123093930 G A KNTC1 Splice_Site p.X1833_splice 0.32 TCGA-06-5416-01 12 123098198 123098198 C T KNTC1 Silent p.L1923L 0.47 TCGA-06-5416-01 12 12317235 12317235 C T LRP6 Missense_Mutation p.R675Q 0.21 deleterious(0.01) possibly_damaging(0.872) TCGA-06-5416-01 12 123186537 123186537 C A HCAR2 3'UTR 0.24 TCGA-06-5416-01 12 123186609 123186609 C T HCAR2 3'UTR 0.23 TCGA-06-5416-01 12 123200265 123200265 G A HCAR3 Silent p.G340G 0.22 TCGA-06-5416-01 12 123200491 123200491 T G HCAR3 Missense_Mutation p.N265T 0.20 tolerated(0.52) benign(0.019) TCGA-06-5416-01 12 123200533 123200533 C T HCAR3 Missense_Mutation p.R251Q 0.45 tolerated(0.13) probably_damaging(0.999) TCGA-06-5416-01 12 123200543 123200543 C T HCAR3 Missense_Mutation p.V248M 0.18 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 12 123214628 123214628 G A HCAR1 Missense_Mutation p.P87S 0.53 tolerated(0.1) benign(0.047) TCGA-06-5416-01 12 123262119 123262119 C T CCDC62 Nonsense_Mutation p.R40* 0.24 TCGA-06-5416-01 12 123265808 123265808 G T CCDC62 Missense_Mutation p.K109N 0.16 tolerated(0.37) probably_damaging(0.998) TCGA-06-5416-01 12 12334106 12334106 C T LRP6 Missense_Mutation p.R415Q 0.42 deleterious(0.02) possibly_damaging(0.73) TCGA-06-5416-01 12 123647632 123647632 C T MPHOSPH9 Silent p.K834K 0.39 TCGA-06-5416-01 12 123787445 123787445 G A SBNO1 Silent p.V1257V 0.16 TCGA-06-5416-01 12 123789267 123789267 C A SBNO1 Splice_Site p.X1211_splice 0.19 TCGA-06-5416-01 12 123806265 123806265 G A SBNO1 Nonsense_Mutation p.R714* 0.21 TCGA-06-5416-01 12 123812063 123812063 T C SBNO1 Silent p.R534R 0.46 TCGA-06-5416-01 12 123815881 123815881 G T SBNO1 Missense_Mutation p.F317L 0.25 deleterious(0.03) possibly_damaging(0.803) TCGA-06-5416-01 12 123879646 123879646 G T SETD8 Missense_Mutation p.Q114H 0.16 tolerated(0.08) benign(0.022) TCGA-06-5416-01 12 123950466 123950466 G A SNRNP35 Missense_Mutation p.E132K 0.40 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 12 123950899 123950899 G A SNRNP35 3'Flank 0.34 TCGA-06-5416-01 12 124090503 124090503 G A DDX55 Missense_Mutation p.R45Q 0.45 tolerated(0.3) benign(0.084) TCGA-06-5416-01 12 124171446 124171446 G A TCTN2 Missense_Mutation p.D210N 0.42 tolerated(0.3) benign(0.02) TCGA-06-5416-01 12 124265698 124265698 C A DNAH10 Silent p.V170V 0.21 TCGA-06-5416-01 12 124281352 124281352 G T DNAH10 Missense_Mutation p.E594D 0.41 benign(0.008) TCGA-06-5416-01 12 124284789 124284789 G A DNAH10 Silent p.S654S 0.24 TCGA-06-5416-01 12 124285836 124285836 C A DNAH10 Missense_Mutation p.A706D 0.18 benign(0.001) TCGA-06-5416-01 12 124298160 124298160 G A DNAH10 Silent p.E1080E 0.43 TCGA-06-5416-01 12 124330291 124330291 G A DNAH10 Silent p.R1717R 0.52 TCGA-06-5416-01 12 124401100 124401100 G A DNAH10 Missense_Mutation p.D3489N 0.19 probably_damaging(0.999) TCGA-06-5416-01 12 124413907 124413907 C T DNAH10 Missense_Mutation p.P4013L 0.43 benign(0.135) TCGA-06-5416-01 12 124418046 124418046 C T DNAH10 Missense_Mutation p.R4371W 0.16 probably_damaging(0.996) TCGA-06-5416-01 12 124419293 124419293 G A DNAH10 Missense_Mutation p.A4417T 0.56 benign(0.077) TCGA-06-5416-01 12 124428937 124428937 C T CCDC92 Intron 0.38 TCGA-06-5416-01 12 124496743 124496743 C T ZNF664 Missense_Mutation p.L18F 0.11 tolerated(0.07) possibly_damaging(0.634) TCGA-06-5416-01 12 124497242 124497242 C T ZNF664 Missense_Mutation p.S184L 0.24 deleterious(0.01) benign(0.377) TCGA-06-5416-01 12 124827641 124827641 G A NCOR2 Missense_Mutation p.R1616W 0.44 probably_damaging(1) TCGA-06-5416-01 12 124846681 124846681 C T NCOR2 Missense_Mutation p.D1031N 0.14 probably_damaging(0.922) TCGA-06-5416-01 12 12491466 12491466 G A MANSC1 Silent p.F84F 0.48 TCGA-06-5416-01 12 12514235 12514235 G A LOH12CR1 Missense_Mutation p.D52N 0.22 deleterious(0) benign(0.179) TCGA-06-5416-01 12 125435264 125435264 G A DHX37 Silent p.I985I 0.53 TCGA-06-5416-01 12 12629662 12629662 C A DUSP16 3'UTR 0.13 TCGA-06-5416-01 12 12633203 12633203 C T DUSP16 Missense_Mutation p.A257T 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 12 12653462 12653462 G A DUSP16 Silent p.V174V 0.10 TCGA-06-5416-01 12 12814874 12814874 G T GPR19 Missense_Mutation p.P170H 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 12871794 12871794 G T CDKN1B Nonsense_Mutation p.E171* 0.46 TCGA-06-5416-01 12 128899712 128899712 C T TMEM132C Missense_Mutation p.A174V 0.19 deleterious(0.01) possibly_damaging(0.873) TCGA-06-5416-01 12 129360528 129360528 G A GLT1D1 Silent p.E46E 0.43 TCGA-06-5416-01 12 12938550 12938550 G A APOLD1 Intron 0.28 TCGA-06-5416-01 12 129558482 129558482 G A TMEM132D Silent p.L1080L 0.45 TCGA-06-5416-01 12 129569053 129569053 G T TMEM132D Silent p.V546V 0.44 TCGA-06-5416-01 12 129822329 129822329 G A TMEM132D Silent p.I383I 0.21 TCGA-06-5416-01 12 130184860 130184860 C A TMEM132D Missense_Mutation p.D155Y 0.15 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 12 130185207 130185207 C A TMEM132D Missense_Mutation p.R39M 0.45 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 12 13061367 13061367 C T GPRC5A Nonsense_Mutation p.R62* 0.46 TCGA-06-5416-01 12 130648880 130648880 G A FZD10 Missense_Mutation p.E465K 0.48 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 12 13065486 13065486 G T GPRC5A 3'UTR 0.22 TCGA-06-5416-01 12 130847639 130847639 C T PIWIL1 Silent p.Y715Y 0.44 TCGA-06-5416-01 12 130884279 130884279 G T RIMBP2 Missense_Mutation p.S1026Y 0.49 deleterious(0) possibly_damaging(0.805) TCGA-06-5416-01 12 130884297 130884297 T C RIMBP2 Missense_Mutation p.D1020G 0.43 deleterious(0) benign(0.157) TCGA-06-5416-01 12 130892306 130892306 C T RIMBP2 Missense_Mutation p.D964N 0.41 tolerated(0.58) possibly_damaging(0.68) TCGA-06-5416-01 12 130912864 130912864 C A RIMBP2 Missense_Mutation p.D741Y 0.23 deleterious(0) probably_damaging(0.928) TCGA-06-5416-01 12 130921617 130921617 C T RIMBP2 Missense_Mutation p.E609K 0.11 tolerated(0.07) benign(0.004) TCGA-06-5416-01 12 13102516 13102516 G A GPRC5D Missense_Mutation p.S268L 0.51 tolerated(0.09) benign(0.018) TCGA-06-5416-01 12 13140127 13140127 G A HEBP1 Silent p.S119S 0.21 TCGA-06-5416-01 12 131487811 131487811 C T GPR133 Missense_Mutation p.P370S 0.23 tolerated(0.87) benign(0) TCGA-06-5416-01 12 13214678 13214678 C T KIAA1467 Silent p.S234S 0.23 TCGA-06-5416-01 12 132334582 132334582 C T MMP17 Silent p.D480D 0.22 TCGA-06-5416-01 12 132445449 132445449 G A EP400 Silent p.P95P 0.43 TCGA-06-5416-01 12 13248578 13248578 G A GSG1 Intron 0.18 TCGA-06-5416-01 12 132512666 132512666 T G EP400 Missense_Mutation p.I1738M 0.41 unknown(0) TCGA-06-5416-01 12 132528770 132528770 A G EP400 Missense_Mutation p.T2167A 0.49 unknown(0) TCGA-06-5416-01 12 132530384 132530384 G A EP400 Missense_Mutation p.R2380H 0.44 unknown(0) TCGA-06-5416-01 12 132547243 132547243 G A EP400 Silent p.T2777T 0.21 TCGA-06-5416-01 12 132551471 132551471 C T EP400 Silent p.V2902V 0.39 TCGA-06-5416-01 12 13256473 13256473 A C GSG1 5'UTR 0.22 TCGA-06-5416-01 12 132603393 132603393 G A EP400NL Intron 0.56 TCGA-06-5416-01 12 132685760 132685760 C T GALNT9 Missense_Mutation p.R71H 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 133198389 133198389 G A P2RX2 Missense_Mutation p.S442N 0.24 tolerated_low_confidence(0.21) benign(0.003) TCGA-06-5416-01 12 133215783 133215783 G A POLE Missense_Mutation p.S1827L 0.18 deleterious(0) possibly_damaging(0.869) TCGA-06-5416-01 12 133245077 133245077 G A POLE Missense_Mutation p.R680C 0.50 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 12 133250289 133250289 C A POLE Missense_Mutation p.V411L 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 133253141 133253141 G A POLE Silent p.I300I 0.42 TCGA-06-5416-01 12 133256109 133256109 G A POLE Silent p.S184S 0.21 TCGA-06-5416-01 12 133363362 133363362 G A GOLGA3 Silent p.F941F 0.26 TCGA-06-5416-01 12 133365639 133365639 G A GOLGA3 Nonsense_Mutation p.R929* 0.49 TCGA-06-5416-01 12 133373202 133373202 C T GOLGA3 Missense_Mutation p.E675K 0.41 tolerated(0.07) possibly_damaging(0.874) TCGA-06-5416-01 12 133682732 133682732 G A ZNF140 Missense_Mutation p.R290H 0.09 tolerated(0.41) benign(0.004) TCGA-06-5416-01 12 133682991 133682991 G A ZNF140 Silent p.T376T 0.22 TCGA-06-5416-01 12 133683040 133683040 G A ZNF140 Missense_Mutation p.A393T 0.18 tolerated(0.25) benign(0.017) TCGA-06-5416-01 12 133733163 133733163 G A ZNF10 Missense_Mutation p.R444Q 0.42 tolerated(0.22) probably_damaging(0.952) TCGA-06-5416-01 12 133733531 133733531 C T ZNF10 Missense_Mutation p.H567Y 0.38 deleterious(0) benign(0.051) TCGA-06-5416-01 12 13716251 13716251 G A GRIN2B Silent p.F1307F 0.21 TCGA-06-5416-01 12 13716839 13716839 G A GRIN2B Silent p.R1111R 0.23 TCGA-06-5416-01 12 13906448 13906448 C T GRIN2B Silent p.A271A 0.18 TCGA-06-5416-01 12 14578397 14578397 G A ATF7IP Silent p.T516T 0.19 TCGA-06-5416-01 12 14650986 14650986 C A ATF7IP Silent p.I1264I 0.43 TCGA-06-5416-01 12 14765913 14765913 C A GUCY2C 3'UTR 0.31 TCGA-06-5416-01 12 14774945 14774945 G T GUCY2C Silent p.V865V 0.12 TCGA-06-5416-01 12 14839126 14839126 G T GUCY2C Missense_Mutation p.P122T 0.14 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 14940356 14940356 G A WBP11 Silent p.F523F 0.26 TCGA-06-5416-01 12 14975952 14975952 C A C12orf60 Missense_Mutation p.S28Y 0.17 deleterious(0) possibly_damaging(0.834) TCGA-06-5416-01 12 14993970 14993970 C A ART4 Nonsense_Mutation p.E88* 0.43 TCGA-06-5416-01 12 15068433 15068433 C T ERP27 Missense_Mutation p.G255E 0.45 deleterious(0.05) benign(0.172) TCGA-06-5416-01 12 15091440 15091440 C T ERP27 Translation_Start_Site p.M1? 0.34 deleterious_low_confidence(0.01) benign(0.07) TCGA-06-5416-01 12 15100875 15100875 C T ARHGDIB Missense_Mutation p.E92K 0.18 tolerated(0.41) benign(0.011) TCGA-06-5416-01 12 15102744 15102744 T C ARHGDIB Missense_Mutation p.D86G 0.21 deleterious(0) probably_damaging(0.909) TCGA-06-5416-01 12 15654909 15654909 C A PTPRO Silent p.S339S 0.19 TCGA-06-5416-01 12 15818796 15818796 C T EPS8 Silent p.P210P 0.18 TCGA-06-5416-01 12 15822606 15822606 C A EPS8 Nonsense_Mutation p.E120* 0.16 TCGA-06-5416-01 12 15823847 15823847 C T EPS8 Silent p.K49K 0.21 TCGA-06-5416-01 12 16189204 16189204 G T DERA Missense_Mutation p.K263N 0.20 deleterious(0.01) possibly_damaging(0.845) TCGA-06-5416-01 12 16510603 16510603 G A MGST1 Missense_Mutation p.R64Q 0.43 tolerated(0.22) benign(0.006) TCGA-06-5416-01 12 1703069 1703069 C T FBXL14 Missense_Mutation p.R55H 0.23 deleterious(0.01) probably_damaging(0.964) TCGA-06-5416-01 12 18234307 18234307 G A RERGL Nonsense_Mutation p.R146* 0.17 TCGA-06-5416-01 12 18499576 18499576 C T PIK3C2G Silent p.G477G 0.23 TCGA-06-5416-01 12 18656295 18656295 A C PIK3C2G Missense_Mutation p.N992H 0.41 tolerated(0.05) probably_damaging(0.996) TCGA-06-5416-01 12 18658394 18658394 A G PIK3C2G Missense_Mutation p.R1067G 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 18691191 18691191 G A PIK3C2G Missense_Mutation p.R1101H 0.26 deleterious(0.03) benign(0.047) TCGA-06-5416-01 12 18800975 18800975 A C PIK3C2G 3'UTR 0.25 TCGA-06-5416-01 12 18891278 18891278 G A CAPZA3 Missense_Mutation p.E26K 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 1940484 1940484 G A LRTM2 Missense_Mutation p.G151S 0.27 tolerated(0.27) probably_damaging(0.935) TCGA-06-5416-01 12 19436241 19436241 A G PLEKHA5 Silent p.R447R 0.17 TCGA-06-5416-01 12 2022273 2022273 G A CACNA2D4 Silent p.I114I 0.21 TCGA-06-5416-01 12 20868182 20868182 T C SLCO1C1 Silent p.D213D 0.42 TCGA-06-5416-01 12 21028302 21028302 A C SLCO1B3 Missense_Mutation p.Q287H 0.17 deleterious(0) possibly_damaging(0.895) TCGA-06-5416-01 12 21036493 21036493 T C SLCO1B3 Missense_Mutation p.F547L 0.48 tolerated(0.69) benign(0.02) TCGA-06-5416-01 12 21054398 21054398 T G SLCO1B3 Missense_Mutation p.F621C 0.25 deleterious(0) possibly_damaging(0.877) TCGA-06-5416-01 12 21175927 21175927 T G SLCO1B7 Missense_Mutation p.L162V 0.50 tolerated(0.65) benign(0.007) TCGA-06-5416-01 12 21196358 21196358 C A SLCO1B7 Missense_Mutation p.S226Y 0.25 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 12 21325651 21325651 C A SLCO1B1 Missense_Mutation p.S51Y 0.25 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 12 21353444 21353444 T G SLCO1B1 Missense_Mutation p.F325V 0.29 deleterious(0) probably_damaging(0.938) TCGA-06-5416-01 12 21531268 21531268 C A IAPP Missense_Mutation p.L60I 0.17 tolerated(0.14) benign(0.419) TCGA-06-5416-01 12 21620438 21620438 A G PYROXD1 Silent p.R380R 0.37 TCGA-06-5416-01 12 21679853 21679853 C A C12orf39 Missense_Mutation p.L14I 0.41 deleterious(0.02) benign(0.192) TCGA-06-5416-01 12 21689931 21689931 A G GYS2 Missense_Mutation p.V690A 0.21 tolerated_low_confidence(0.13) benign(0.001) TCGA-06-5416-01 12 21727140 21727140 C T GYS2 Missense_Mutation p.A206T 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 21733335 21733335 C T GYS2 Missense_Mutation p.E82K 0.45 tolerated(0.05) benign(0.069) TCGA-06-5416-01 12 21998682 21998682 C T ABCC9 Missense_Mutation p.R984H 0.41 tolerated(0.53) benign(0) TCGA-06-5416-01 12 22218253 22218253 C T CMAS 3'UTR 0.25 TCGA-06-5416-01 12 22677460 22677460 G A C2CD5 Missense_Mutation p.R183C 0.44 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 12 22677466 22677466 G A C2CD5 Nonsense_Mutation p.R181* 0.44 TCGA-06-5416-01 12 22797278 22797278 G A ETNK1 Intron 0.40 TCGA-06-5416-01 12 23687401 23687401 C T SOX5 Missense_Mutation p.A682T 0.42 tolerated(1) benign(0.001) TCGA-06-5416-01 12 25002772 25002772 G A BCAT1 Missense_Mutation p.P220S 0.20 tolerated(0.1) benign(0.259) TCGA-06-5416-01 12 250440 250440 C T IQSEC3 Silent p.R714R 0.41 TCGA-06-5416-01 12 25232201 25232201 T A LRMP Nonsense_Mutation p.C16* 0.43 TCGA-06-5416-01 12 25260946 25260946 C A LRMP Silent p.I484I 0.22 TCGA-06-5416-01 12 25263147 25263147 G A CASC1 Nonsense_Mutation p.R603* 0.48 TCGA-06-5416-01 12 25297591 25297591 G A CASC1 Missense_Mutation p.S237F 0.41 tolerated(0.06) possibly_damaging(0.673) TCGA-06-5416-01 12 25679854 25679854 A G IFLTD1 Missense_Mutation p.V176A 0.19 tolerated(0.26) benign(0.051) TCGA-06-5416-01 12 26493254 26493254 T C ITPR2 Missense_Mutation p.N2622S 0.44 deleterious(0.03) possibly_damaging(0.549) TCGA-06-5416-01 12 26568342 26568342 G A ITPR2 Silent p.V2400V 0.37 TCGA-06-5416-01 12 26580976 26580976 G A ITPR2 Missense_Mutation p.A2272V 0.16 tolerated(0.23) benign(0.029) TCGA-06-5416-01 12 26636830 26636830 T G ITPR2 Missense_Mutation p.N1938T 0.24 deleterious(0) benign(0.395) TCGA-06-5416-01 12 26639133 26639133 G A ITPR2 Silent p.S1905S 0.19 TCGA-06-5416-01 12 26639236 26639236 G T ITPR2 Missense_Mutation p.S1871Y 0.19 deleterious(0.01) possibly_damaging(0.781) TCGA-06-5416-01 12 26714877 26714877 G A ITPR2 Missense_Mutation p.R1547C 0.18 deleterious(0) possibly_damaging(0.847) TCGA-06-5416-01 12 26749968 26749968 C A ITPR2 Nonsense_Mutation p.E1368* 0.22 TCGA-06-5416-01 12 26752955 26752955 G T ITPR2 Missense_Mutation p.L1256I 0.53 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 26809347 26809347 G A ITPR2 Missense_Mutation p.A776V 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 27069086 27069086 C T ASUN Missense_Mutation p.R366Q 0.37 deleterious(0.03) possibly_damaging(0.691) TCGA-06-5416-01 12 27089546 27089546 C A ASUN Missense_Mutation p.R64I 0.40 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 27135725 27135725 T C TM7SF3 Silent p.G312G 0.52 TCGA-06-5416-01 12 27450666 27450666 G A STK38L Missense_Mutation p.A5T 0.24 tolerated(0.41) benign(0.001) TCGA-06-5416-01 12 27523078 27523078 G T ARNTL2 Nonsense_Mutation p.E67* 0.23 TCGA-06-5416-01 12 27809579 27809579 G T PPFIBP1 Nonsense_Mutation p.E274* 0.18 TCGA-06-5416-01 12 27850274 27850274 C G REP15 3'UTR 0.29 TCGA-06-5416-01 12 27877015 27877015 G A MRPS35 Missense_Mutation p.D140N 0.50 tolerated(0.07) possibly_damaging(0.685) TCGA-06-5416-01 12 27890525 27890525 T C MRPS35 Missense_Mutation p.L229S 0.05 deleterious(0.02) benign(0.393) TCGA-06-5416-01 12 2800293 2800293 C A CACNA1C Silent p.G2163G 0.26 TCGA-06-5416-01 12 28116169 28116169 G T PTHLH Intron 0.15 TCGA-06-5416-01 12 28116553 28116553 G T PTHLH Silent p.P84P 0.19 TCGA-06-5416-01 12 28459805 28459805 A C CCDC91 Missense_Mutation p.Q133P 0.38 tolerated(0.2) possibly_damaging(0.635) TCGA-06-5416-01 12 2927389 2927389 G T ITFG2 Missense_Mutation p.V118F 0.53 tolerated(0.38) benign(0.002) TCGA-06-5416-01 12 2929266 2929266 C T ITFG2 Missense_Mutation p.R141C 0.20 tolerated(0.63) benign(0) TCGA-06-5416-01 12 2933264 2933264 G A ITFG2 Missense_Mutation p.D417N 0.20 tolerated(0.08) benign(0.081) TCGA-06-5416-01 12 2937191 2937191 C T NRIP2 Missense_Mutation p.A201T 0.41 tolerated(0.33) benign(0.016) TCGA-06-5416-01 12 29450044 29450044 T C FAR2 Silent p.S152S 0.20 TCGA-06-5416-01 12 29486584 29486584 C T FAR2 Missense_Mutation p.L469F 0.19 tolerated(0.76) benign(0.006) TCGA-06-5416-01 12 29597077 29597077 C T OVCH1 Splice_Site p.X1006_splice 0.15 TCGA-06-5416-01 12 29631806 29631806 T C OVCH1 Missense_Mutation p.D344G 0.51 tolerated(0.1) benign(0.025) TCGA-06-5416-01 12 29671411 29671411 T C TMTC1 Missense_Mutation p.Y673C 0.22 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 12 29725065 29725065 G A TMTC1 Missense_Mutation p.A502V 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 29736467 29736467 G A TMTC1 Missense_Mutation p.L431F 0.15 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 29786167 29786167 C T TMTC1 Silent p.E347E 0.44 TCGA-06-5416-01 12 3042616 3042616 G T TULP3 Missense_Mutation p.K243N 0.36 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 12 30864514 30864514 C T CAPRIN2 Missense_Mutation p.R884Q 0.25 tolerated(0.15) benign(0.024) TCGA-06-5416-01 12 30881895 30881895 T G CAPRIN2 Missense_Mutation p.K490T 0.22 deleterious(0.04) benign(0.015) TCGA-06-5416-01 12 31237541 31237541 C T DDX11 Nonsense_Mutation p.R140* 0.34 TCGA-06-5416-01 12 31249802 31249802 C T DDX11 Missense_Mutation p.A547V 0.42 tolerated(0.21) benign(0.001) TCGA-06-5416-01 12 313862 313862 C A SLC6A12 Missense_Mutation p.A73S 0.20 deleterious(0.01) possibly_damaging(0.559) TCGA-06-5416-01 12 31604952 31604952 G A DENND5B Silent p.Y517Y 0.34 TCGA-06-5416-01 12 31820811 31820811 G T METTL20 Nonsense_Mutation p.G226* 0.14 TCGA-06-5416-01 12 31944776 31944776 G T H3F3C Missense_Mutation p.L109M 0.26 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-06-5416-01 12 31944927 31944927 G A H3F3C Silent p.T58T 0.45 TCGA-06-5416-01 12 32134264 32134264 G A KIAA1551 Silent p.R125R 0.21 TCGA-06-5416-01 12 32135501 32135501 G A KIAA1551 Missense_Mutation p.V538I 0.19 tolerated(0.5) benign(0.001) TCGA-06-5416-01 12 32137072 32137072 G A KIAA1551 Silent p.E1061E 0.19 TCGA-06-5416-01 12 32137876 32137876 G A KIAA1551 Silent p.Q1329Q 0.22 TCGA-06-5416-01 12 32138290 32138290 C A KIAA1551 Silent p.I1467I 0.44 TCGA-06-5416-01 12 32138401 32138401 C A KIAA1551 Silent p.T1504T 0.43 TCGA-06-5416-01 12 32369267 32369267 G A BICD1 Silent p.S100S 0.45 TCGA-06-5416-01 12 32458797 32458797 G A BICD1 Missense_Mutation p.R249Q 0.17 deleterious(0.02) possibly_damaging(0.888) TCGA-06-5416-01 12 32735039 32735039 G T FGD4 Missense_Mutation p.D80Y 0.49 deleterious_low_confidence(0.01) possibly_damaging(0.594) TCGA-06-5416-01 12 32754340 32754340 G T FGD4 Missense_Mutation p.E273D 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 12 32896464 32896464 G A DNM1L 3'UTR 0.18 TCGA-06-5416-01 12 32908122 32908122 G T YARS2 Missense_Mutation p.F229L 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 12 32945618 32945618 G A PKP2 Missense_Mutation p.S846F 0.40 deleterious(0.02) benign(0.167) TCGA-06-5416-01 12 32945636 32945636 G A PKP2 Missense_Mutation p.A840V 0.47 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 32955370 32955370 G T PKP2 Missense_Mutation p.L756M 0.22 tolerated(0.11) probably_damaging(0.999) TCGA-06-5416-01 12 33030801 33030801 G A PKP2 Missense_Mutation p.T338I 0.27 tolerated(0.08) benign(0.006) TCGA-06-5416-01 12 333160 333160 C A SLC6A13 Nonsense_Mutation p.E437* 0.21 TCGA-06-5416-01 12 33559866 33559866 C T SYT10 Missense_Mutation p.R312Q 0.46 deleterious(0.01) probably_damaging(0.927) TCGA-06-5416-01 12 352888 352888 C A SLC6A13 Missense_Mutation p.Q98H 0.49 deleterious(0.01) possibly_damaging(0.857) TCGA-06-5416-01 12 3763524 3763524 C A EFCAB4B Missense_Mutation p.E300D 0.42 tolerated(0.05) benign(0.082) TCGA-06-5416-01 12 38714245 38714245 G T ALG10B Missense_Mutation p.D218Y 0.22 deleterious(0.01) benign(0.006) TCGA-06-5416-01 12 39161444 39161444 C T CPNE8 Missense_Mutation p.D190N 0.14 tolerated(0.06) benign(0.058) TCGA-06-5416-01 12 39268297 39268297 C A CPNE8 Missense_Mutation p.D39Y 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 39716602 39716602 G A KIF21A Missense_Mutation p.A1180V 0.17 tolerated(0.42) benign(0.044) TCGA-06-5416-01 12 39726768 39726768 C T KIF21A Missense_Mutation p.G877R 0.38 tolerated(0.45) benign(0.102) TCGA-06-5416-01 12 39734802 39734802 C A KIF21A Missense_Mutation p.Q672H 0.16 tolerated(0.71) benign(0.008) TCGA-06-5416-01 12 39760931 39760931 C A KIF21A Silent p.R212R 0.39 TCGA-06-5416-01 12 40010796 40010796 C A ABCD2 Missense_Mutation p.D372Y 0.44 deleterious(0) possibly_damaging(0.702) TCGA-06-5416-01 12 40115131 40115131 A G C12orf40 3'UTR 0.26 TCGA-06-5416-01 12 40158360 40158360 C A SLC2A13 Missense_Mutation p.R541I 0.20 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 402109 402109 C T KDM5A Missense_Mutation p.R1561K 0.18 tolerated(0.36) possibly_damaging(0.745) TCGA-06-5416-01 12 40645294 40645294 C T LRRK2 Missense_Mutation p.L377F 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 40707837 40707838 - T LRRK2 Frame_Shift_Ins p.L1535Ffs*5 0.22 TCGA-06-5416-01 12 40714845 40714845 C T LRRK2 Silent p.D1675D 0.44 TCGA-06-5416-01 12 40715858 40715858 G T LRRK2 Missense_Mutation p.R1731I 0.18 tolerated(0.1) probably_damaging(0.999) TCGA-06-5416-01 12 40758694 40758694 C A LRRK2 Missense_Mutation p.S2411Y 0.38 deleterious(0.02) benign(0.372) TCGA-06-5416-01 12 41327621 41327621 A C CNTN1 Missense_Mutation p.E309A 0.50 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 12 41330685 41330685 G A CNTN1 Missense_Mutation p.R363Q 0.42 deleterious(0.01) probably_damaging(0.983) TCGA-06-5416-01 12 41333164 41333164 C A CNTN1 Missense_Mutation p.P419H 0.18 deleterious(0.04) possibly_damaging(0.861) TCGA-06-5416-01 12 41337962 41337962 G T CNTN1 Missense_Mutation p.R558M 0.14 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 12 41961614 41961614 G A PDZRN4 Silent p.R499R 0.19 TCGA-06-5416-01 12 420087 420087 C T KDM5A Silent p.T1060T 0.23 TCGA-06-5416-01 12 42748962 42748962 G T PPHLN1 Splice_Site p.X80_splice 0.40 TCGA-06-5416-01 12 42787467 42787467 C T PPHLN1 Silent p.N248N 0.12 TCGA-06-5416-01 12 43840515 43840515 C T ADAMTS20 Missense_Mutation p.A694T 0.52 deleterious(0) benign(0.185) TCGA-06-5416-01 12 43846452 43846452 G A ADAMTS20 Nonsense_Mutation p.R603* 0.16 TCGA-06-5416-01 12 43944748 43944748 C A ADAMTS20 Missense_Mutation p.E139D 0.42 tolerated(0.47) benign(0.029) TCGA-06-5416-01 12 44166837 44166837 G A IRAK4 Missense_Mutation p.V205I 0.14 tolerated(0.93) benign(0.001) TCGA-06-5416-01 12 45410152 45410152 C A DBX2 Nonsense_Mutation p.E313* 0.41 TCGA-06-5416-01 12 4543449 4543449 C T FGF6 Missense_Mutation p.G187R 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 45803176 45803176 T G ANO6 Silent p.V660V 0.50 TCGA-06-5416-01 12 4627421 4627421 C T C12orf4 Missense_Mutation p.G279E 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 46320186 46320186 G A SCAF11 Nonsense_Mutation p.R1100* 0.43 TCGA-06-5416-01 12 46320959 46320959 C T SCAF11 Missense_Mutation p.G842D 0.28 tolerated(0.28) probably_damaging(1) TCGA-06-5416-01 12 46321112 46321112 C A SCAF11 Missense_Mutation p.R791I 0.24 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 12 46321115 46321115 C T SCAF11 Missense_Mutation p.R790Q 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 46327968 46327968 C T SCAF11 Missense_Mutation p.R208K 0.23 tolerated(0.05) benign(0.118) TCGA-06-5416-01 12 46339056 46339056 C A SCAF11 Missense_Mutation p.V147F 0.38 tolerated(0.86) benign(0) TCGA-06-5416-01 12 4736164 4736164 G A AKAP3 Missense_Mutation p.S635F 0.42 deleterious(0.01) possibly_damaging(0.827) TCGA-06-5416-01 12 4737566 4737566 T G AKAP3 Missense_Mutation p.T168P 0.23 tolerated(0.15) benign(0.003) TCGA-06-5416-01 12 48057205 48057205 C T RPAP3 3'UTR 0.24 TCGA-06-5416-01 12 48174080 48174080 C A SLC48A1 3'UTR 0.26 TCGA-06-5416-01 12 48367899 48367899 C T COL2A1 Silent p.T1430T 0.21 TCGA-06-5416-01 12 48375786 48375786 G A COL2A1 Intron 0.53 TCGA-06-5416-01 12 48442753 48442753 G A SENP1 Missense_Mutation p.L524F 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 48458927 48458927 G A SENP1 Missense_Mutation p.P399L 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 48528823 48528823 T G PFKM Splice_Site p.X352_splice 0.32 TCGA-06-5416-01 12 48534571 48534571 C T PFKM Missense_Mutation p.R491C 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 12 48537905 48537905 G A PFKM Missense_Mutation p.D724N 0.17 deleterious(0.02) probably_damaging(0.96) TCGA-06-5416-01 12 4853823 4853823 G A GALNT8 Missense_Mutation p.V273M 0.37 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 12 4854783 4854783 C T GALNT8 Missense_Mutation p.A350V 0.23 deleterious(0.03) probably_damaging(0.941) TCGA-06-5416-01 12 48578262 48578262 G T C12orf68 Missense_Mutation p.E119D 0.39 tolerated_low_confidence(0.32) probably_damaging(0.98) TCGA-06-5416-01 12 48596516 48596516 C T OR10AD1 Missense_Mutation p.G187D 0.18 tolerated(0.2) benign(0.006) TCGA-06-5416-01 12 48596580 48596580 G A OR10AD1 Nonsense_Mutation p.R166* 0.39 TCGA-06-5416-01 12 48596990 48596990 G A OR10AD1 Missense_Mutation p.A29V 0.16 tolerated(0.88) benign(0.004) TCGA-06-5416-01 12 48737390 48737390 G A ZNF641 Missense_Mutation p.S228F 0.27 tolerated(0.24) benign(0.424) TCGA-06-5416-01 12 48866816 48866816 C T ANP32D Silent p.C123C 0.39 TCGA-06-5416-01 12 48888597 48888597 G T C12orf54 Missense_Mutation p.D87Y 0.22 tolerated(0.1) probably_damaging(0.979) TCGA-06-5416-01 12 48919945 48919945 C T OR8S1 Silent p.Y177Y 0.21 TCGA-06-5416-01 12 49087038 49087038 C A CCNT1 Missense_Mutation p.Q653H 0.21 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-06-5416-01 12 49170980 49170980 T C ADCY6 Missense_Mutation p.D428G 0.50 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 49218085 49218085 C T CACNB3 Silent p.G112G 0.22 TCGA-06-5416-01 12 49225956 49225956 C T DDX23 Missense_Mutation p.A657T 0.38 deleterious(0.04) benign(0.01) TCGA-06-5416-01 12 49239459 49239459 C T DDX23 Missense_Mutation p.R36Q 0.48 tolerated_low_confidence(0.05) unknown(0) TCGA-06-5416-01 12 49254883 49254883 C T RND1 Missense_Mutation p.S117N 0.40 tolerated(1) benign(0.001) TCGA-06-5416-01 12 49310804 49310804 C A CCDC65 Silent p.I174I 0.23 TCGA-06-5416-01 12 49390451 49390451 C A DDN 3'UTR 0.36 TCGA-06-5416-01 12 49396927 49396927 C A PRKAG1 Missense_Mutation p.E305D 0.18 deleterious(0) possibly_damaging(0.825) TCGA-06-5416-01 12 49422666 49422666 T G KMT2D Missense_Mutation p.K4776T 0.07 benign(0.184) TCGA-06-5416-01 12 49432431 49432431 C A KMT2D Missense_Mutation p.R2903I 0.29 possibly_damaging(0.802) TCGA-06-5416-01 12 49434198 49434198 C T KMT2D Missense_Mutation p.R2452H 0.46 probably_damaging(0.967) TCGA-06-5416-01 12 49434731 49434731 C T KMT2D Silent p.S2274S 0.10 TCGA-06-5416-01 12 49438225 49438225 C T KMT2D Missense_Mutation p.E1682K 0.23 possibly_damaging(0.879) TCGA-06-5416-01 12 49460300 49460300 C A RHEBL1 Missense_Mutation p.E97D 0.43 deleterious(0.04) benign(0.004) TCGA-06-5416-01 12 49499706 49499706 C T LMBR1L Splice_Site p.X64_splice 0.23 TCGA-06-5416-01 12 49521855 49521855 C T TUBA1B Silent p.E414E 0.22 TCGA-06-5416-01 12 49579498 49579498 G A TUBA1A Silent p.L217L 0.42 TCGA-06-5416-01 12 49580526 49580526 G A TUBA1A Missense_Mutation p.P32S 0.27 deleterious_low_confidence(0.04) possibly_damaging(0.73) TCGA-06-5416-01 12 49658906 49658906 G A TUBA1C 5'UTR 0.24 TCGA-06-5416-01 12 49666314 49666314 T C TUBA1C Silent p.D218D 0.17 TCGA-06-5416-01 12 49666322 49666322 G A TUBA1C Missense_Mutation p.R221H 0.38 deleterious_low_confidence(0.03) benign(0.435) TCGA-06-5416-01 12 49724335 49724335 C A TROAP Silent p.S569S 0.39 TCGA-06-5416-01 12 49745359 49745359 C T DNAJC22 3'UTR 0.34 TCGA-06-5416-01 12 49944103 49944103 G A KCNH3 Missense_Mutation p.A637T 0.17 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 49981336 49981336 G A FAM186B 3'UTR 0.26 TCGA-06-5416-01 12 50025703 50025703 G A PRPF40B Missense_Mutation p.A97T 0.08 tolerated(0.23) unknown(0) TCGA-06-5416-01 12 50136026 50136026 G A TMBIM6 Missense_Mutation p.G36D 0.18 deleterious_low_confidence(0.03) benign(0.012) TCGA-06-5416-01 12 50153042 50153042 C T TMBIM6 Silent p.F242F 0.50 TCGA-06-5416-01 12 50156668 50156668 G A TMBIM6 Missense_Mutation p.E293K 0.18 tolerated(0.76) unknown(0) TCGA-06-5416-01 12 50156763 50156763 C A TMBIM6 3'UTR 0.24 TCGA-06-5416-01 12 5021115 5021115 G A KCNA1 Missense_Mutation p.E191K 0.20 deleterious(0.04) benign(0.018) TCGA-06-5416-01 12 5021550 5021550 G A KCNA1 Missense_Mutation p.G336R 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 50264295 50264295 G A FAIM2 Nonsense_Mutation p.R315* 0.20 TCGA-06-5416-01 12 50295088 50295088 G A FAIM2 Silent p.A12A 0.50 TCGA-06-5416-01 12 50488298 50488298 G T SMARCD1 Missense_Mutation p.M404I 0.21 deleterious(0.03) possibly_damaging(0.54) TCGA-06-5416-01 12 50500126 50500126 G A GPD1 Missense_Mutation p.R139H 0.16 tolerated(0.23) benign(0.001) TCGA-06-5416-01 12 50536912 50536912 G A CERS5 Missense_Mutation p.R127C 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 50829356 50829356 G T LARP4 Nonsense_Mutation p.E162* 0.25 TCGA-06-5416-01 12 51100376 51100376 G A DIP2B Missense_Mutation p.R821Q 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 51389534 51389534 G A SLC11A2 Nonsense_Mutation p.R319* 0.31 TCGA-06-5416-01 12 51445905 51445905 A C LETMD1 Missense_Mutation p.K102T 0.15 tolerated(0.09) benign(0.063) TCGA-06-5416-01 12 51450188 51450188 G T LETMD1 Missense_Mutation p.R286I 0.23 deleterious(0) possibly_damaging(0.879) TCGA-06-5416-01 12 51488951 51488951 C T TFCP2 3'UTR 0.26 TCGA-06-5416-01 12 5155147 5155147 G T KCNA5 Missense_Mutation p.D612Y 0.49 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 12 51584291 51584291 C T POU6F1 Silent p.R215R 0.21 TCGA-06-5416-01 12 51632646 51632646 A C DAZAP2 5'UTR 0.27 TCGA-06-5416-01 12 51639893 51639893 G A DAZAP2 3'Flank 0.20 TCGA-06-5416-01 12 51675234 51675234 G T BIN2 3'UTR 0.19 TCGA-06-5416-01 12 51722323 51722323 G A CELA1 3'UTR 0.12 TCGA-06-5416-01 12 51736400 51736400 G A CELA1 Silent p.I95I 0.19 TCGA-06-5416-01 12 51737544 51737544 C T CELA1 Missense_Mutation p.V65M 0.37 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 12 51758090 51758090 C A GALNT6 Missense_Mutation p.E288D 0.24 deleterious(0) benign(0.092) TCGA-06-5416-01 12 51773298 51773298 G A GALNT6 Missense_Mutation p.L90F 0.22 tolerated(0.23) possibly_damaging(0.453) TCGA-06-5416-01 12 51901223 51901223 G A SLC4A8 3'UTR 0.38 TCGA-06-5416-01 12 52080918 52080918 A T SCN8A Missense_Mutation p.I177F 0.17 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 12 52168013 52168013 G A SCN8A Missense_Mutation p.R1229H 0.18 deleterious(0) possibly_damaging(0.557) TCGA-06-5416-01 12 52180585 52180585 C T SCN8A Missense_Mutation p.A1401V 0.21 tolerated(0.5) possibly_damaging(0.507) TCGA-06-5416-01 12 52200655 52200655 C T SCN8A Silent p.F1795F 0.40 TCGA-06-5416-01 12 52309933 52309933 G A ACVRL1 Missense_Mutation p.D388N 0.21 tolerated(0.56) benign(0.264) TCGA-06-5416-01 12 52407660 52407660 G A GRASP Splice_Site p.X183_splice 0.23 TCGA-06-5416-01 12 52408897 52408897 A G GRASP Missense_Mutation p.T368A 0.36 tolerated(0.28) benign(0.005) TCGA-06-5416-01 12 52467477 52467477 C T C12orf44 Missense_Mutation p.R15W 0.24 tolerated(0.06) benign(0.168) TCGA-06-5416-01 12 52467520 52467520 T G C12orf44 Missense_Mutation p.L29R 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 52470987 52470987 C A C12orf44 3'UTR 0.20 TCGA-06-5416-01 12 52566069 52566069 C T KRT80 Missense_Mutation p.R364H 0.22 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 12 52635338 52635338 G A KRT7 Missense_Mutation p.G259D 0.49 deleterious(0.05) benign(0.065) TCGA-06-5416-01 12 52648064 52648064 G A KRT121P RNA 0.22 TCGA-06-5416-01 12 52649905 52649905 C T KRT121P RNA 0.44 TCGA-06-5416-01 12 52685222 52685222 G A KRT81 Missense_Mutation p.R10C 0.50 deleterious(0) possibly_damaging(0.587) TCGA-06-5416-01 12 52779292 52779292 C A KRT84 Missense_Mutation p.Q26H 0.41 deleterious(0.03) benign(0.205) TCGA-06-5416-01 12 52790694 52790694 C A KRT82 Missense_Mutation p.Q347H 0.43 tolerated(0.2) possibly_damaging(0.823) TCGA-06-5416-01 12 52793772 52793772 G A KRT82 Silent p.C313C 0.45 TCGA-06-5416-01 12 52797610 52797610 G A KRT82 Silent p.I165I 0.42 TCGA-06-5416-01 12 52865911 52865911 G A KRT6C Missense_Mutation p.R232W 0.22 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 12 52881423 52881423 G T KRT6A 3'UTR 0.22 TCGA-06-5416-01 12 52884933 52884933 C T KRT6A Missense_Mutation p.R260H 0.16 tolerated(0.06) benign(0.36) TCGA-06-5416-01 12 52914010 52914010 G T KRT5 Missense_Mutation p.T24N 0.23 deleterious(0.01) benign(0.403) TCGA-06-5416-01 12 52981453 52981453 G A KRT72 Silent p.I424I 0.21 TCGA-06-5416-01 12 52984680 52984680 G A KRT72 Silent p.I343I 0.22 TCGA-06-5416-01 12 52992876 52992876 C A KRT72 Missense_Mutation p.Q149H 0.45 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 12 52994829 52994829 G A KRT72 Silent p.F136F 0.54 TCGA-06-5416-01 12 53045359 53045359 C T KRT2 Missense_Mutation p.A190T 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 53045801 53045801 G T KRT2 Nonsense_Mutation p.C42* 0.26 TCGA-06-5416-01 12 53070150 53070150 G T KRT1 Missense_Mutation p.L462M 0.09 tolerated(0.05) probably_damaging(0.99) TCGA-06-5416-01 12 53091652 53091652 A G KRT77 Missense_Mutation p.V191A 0.43 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 12 53166632 53166632 C T KRT76 Missense_Mutation p.E303K 0.05 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 12 53167403 53167403 C T KRT76 Missense_Mutation p.R280H 0.29 deleterious(0.03) possibly_damaging(0.534) TCGA-06-5416-01 12 53205760 53205760 A G KRT4 Missense_Mutation p.V155A 0.51 deleterious(0) possibly_damaging(0.844) TCGA-06-5416-01 12 53227585 53227585 C T KRT79 Missense_Mutation p.A154T 0.39 deleterious(0) possibly_damaging(0.863) TCGA-06-5416-01 12 53292506 53292506 C T KRT8 Missense_Mutation p.E415K 0.44 deleterious(0.03) benign(0.053) TCGA-06-5416-01 12 53292567 53292567 G A KRT8 Silent p.D394D 0.17 TCGA-06-5416-01 12 53293801 53293801 A G KRT8 Missense_Mutation p.S275P 0.51 deleterious(0.04) probably_damaging(0.996) TCGA-06-5416-01 12 53342931 53342931 C A KRT18 5'UTR 0.37 TCGA-06-5416-01 12 53345332 53345332 C A KRT18 Missense_Mutation p.S242Y 0.25 tolerated(0.05) benign(0.169) TCGA-06-5416-01 12 53427616 53427616 C A EIF4B Missense_Mutation p.L336I 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 12 53449459 53449459 C T TENC1 Silent p.V237V 0.20 TCGA-06-5416-01 12 53451427 53451427 C T TENC1 Missense_Mutation p.L318F 0.17 tolerated(0.06) benign(0.025) TCGA-06-5416-01 12 53552431 53552431 C T CSAD Missense_Mutation p.G476D 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 53553994 53553994 C T CSAD Missense_Mutation p.R386H 0.18 tolerated(0.97) benign(0.078) TCGA-06-5416-01 12 53585315 53585315 C T ITGB7 3'UTR 0.50 TCGA-06-5416-01 12 53662876 53662876 T C ESPL1 Silent p.C50C 0.42 TCGA-06-5416-01 12 53663022 53663022 G A ESPL1 Missense_Mutation p.R99Q 0.41 deleterious(0.01) probably_damaging(0.914) TCGA-06-5416-01 12 53684212 53684212 G T ESPL1 Nonsense_Mutation p.E1775* 0.46 TCGA-06-5416-01 12 53776218 53776218 G T SP1 Nonsense_Mutation p.G163* 0.43 TCGA-06-5416-01 12 53777135 53777135 G T SP1 Missense_Mutation p.Q468H 0.16 deleterious(0.05) possibly_damaging(0.781) TCGA-06-5416-01 12 53825051 53825051 G A AMHR2 Missense_Mutation p.A506T 0.21 tolerated(0.08) possibly_damaging(0.483) TCGA-06-5416-01 12 53880272 53880272 C T MAP3K12 Missense_Mutation p.D194N 0.45 tolerated(0.05) possibly_damaging(0.688) TCGA-06-5416-01 12 53895879 53895879 C T TARBP2 Missense_Mutation p.T45M 0.21 tolerated(0.18) probably_damaging(0.999) TCGA-06-5416-01 12 53900008 53900008 C T TARBP2 3'UTR 0.58 TCGA-06-5416-01 12 54059105 54059105 G T ATP5G2 Missense_Mutation p.A197D 0.20 deleterious(0) probably_damaging(0.933) TCGA-06-5416-01 12 54367128 54367128 C T HOXC11 Missense_Mutation p.P35S 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 54367361 54367361 G T HOXC11 Missense_Mutation p.E112D 0.06 tolerated(0.47) probably_damaging(0.946) TCGA-06-5416-01 12 54379403 54379403 G A HOXC10 Silent p.A120A 0.37 TCGA-06-5416-01 12 54394046 54394046 C T HOXC9 Missense_Mutation p.A25V 0.22 tolerated(0.09) possibly_damaging(0.684) TCGA-06-5416-01 12 54394488 54394488 G T HOXC9 Missense_Mutation p.E172D 0.35 tolerated(0.31) benign(0.001) TCGA-06-5416-01 12 54575831 54575831 G T SMUG1 3'UTR 0.18 TCGA-06-5416-01 12 54635577 54635577 C T CBX5 Missense_Mutation p.D180N 0.13 tolerated(0.06) benign(0.077) TCGA-06-5416-01 12 54639981 54639981 G A CBX5 Missense_Mutation p.R115W 0.49 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 12 54688948 54688948 G A NFE2 Nonsense_Mutation p.Q29* 0.19 TCGA-06-5416-01 12 54737010 54737010 T C COPZ1 Silent p.S57S 0.17 TCGA-06-5416-01 12 54756333 54756333 G A GPR84 3'UTR 0.27 TCGA-06-5416-01 12 54757148 54757148 G A GPR84 Missense_Mutation p.P163L 0.26 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 12 54799046 54799046 G A ITGA5 Missense_Mutation p.P377S 0.21 tolerated(0.74) benign(0.006) TCGA-06-5416-01 12 54854250 54854250 G A GTSF1 Missense_Mutation p.A133V 0.20 tolerated(0.17) benign(0.002) TCGA-06-5416-01 12 54905782 54905782 G T NCKAP1L Missense_Mutation p.Q278H 0.43 tolerated(0.55) benign(0.312) TCGA-06-5416-01 12 54925595 54925595 G T NCKAP1L Nonsense_Mutation p.E923* 0.41 TCGA-06-5416-01 12 54971215 54971215 G A PPP1R1A 3'Flank 0.43 TCGA-06-5416-01 12 55357528 55357528 G A TESPA1 Missense_Mutation p.A218V 0.37 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 12 55367343 55367343 G A TESPA1 Intron 0.44 TCGA-06-5416-01 12 55421316 55421316 G T NEUROD4 3'UTR 0.20 TCGA-06-5416-01 12 55523738 55523738 G T OR9K2 Missense_Mutation p.M62I 0.19 tolerated(0.8) benign(0.006) TCGA-06-5416-01 12 55523953 55523953 T C OR9K2 Missense_Mutation p.V134A 0.10 tolerated(0.13) benign(0.013) TCGA-06-5416-01 12 55523993 55523993 C T OR9K2 Silent p.R147R 0.51 TCGA-06-5416-01 12 55714765 55714765 C A OR6C1 Missense_Mutation p.L128M 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 12 55726314 55726314 C T OR6C3 Missense_Mutation p.S277F 0.40 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-06-5416-01 12 55794438 55794438 C T OR6C65 Silent p.I42I 0.43 TCGA-06-5416-01 12 55863898 55863898 C A OR6C70 Nonsense_Mutation p.E9* 0.21 TCGA-06-5416-01 12 55945360 55945360 C T OR6C4 Missense_Mutation p.S117F 0.23 deleterious_low_confidence(0.01) benign(0.006) TCGA-06-5416-01 12 56113494 56113494 T G BLOC1S1 3'Flank 0.25 TCGA-06-5416-01 12 56154347 56154347 T G SARNP Silent p.T193T 0.37 TCGA-06-5416-01 12 56212807 56212807 C T ORMDL2 Silent p.S8S 0.28 TCGA-06-5416-01 12 56221509 56221509 C A DNAJC14 Missense_Mutation p.G312W 0.18 tolerated(0.09) benign(0.006) TCGA-06-5416-01 12 56231653 56231653 C T MMP19 Missense_Mutation p.R345Q 0.43 deleterious(0.02) possibly_damaging(0.892) TCGA-06-5416-01 12 56236137 56236137 C T MMP19 Missense_Mutation p.R58K 0.39 tolerated(0.06) possibly_damaging(0.771) TCGA-06-5416-01 12 56236144 56236144 C T MMP19 Missense_Mutation p.A56T 0.39 deleterious(0) probably_damaging(0.948) TCGA-06-5416-01 12 56359860 56359860 G A PMEL 5'Flank 0.23 TCGA-06-5416-01 12 56361680 56361680 C A CDK2 Silent p.I52I 0.36 TCGA-06-5416-01 12 56397976 56397976 G A SUOX Missense_Mutation p.R268Q 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 56398143 56398143 G T SUOX Missense_Mutation p.D324Y 0.47 deleterious(0) probably_damaging(0.96) TCGA-06-5416-01 12 56428753 56428753 C T IKZF4 Missense_Mutation p.R466W 0.45 deleterious(0) probably_damaging(0.91) TCGA-06-5416-01 12 56487628 56487628 C T ERBB3 Nonsense_Mutation p.R521* 0.42 TCGA-06-5416-01 12 56498572 56498572 C T PA2G4 Silent p.V17V 0.45 TCGA-06-5416-01 12 56527446 56527446 G A ESYT1 Silent p.E456E 0.43 TCGA-06-5416-01 12 56532229 56532229 G A ESYT1 Silent p.A803A 0.20 TCGA-06-5416-01 12 56557538 56557538 G A SMARCC2 Missense_Mutation p.P1194S 0.37 tolerated_low_confidence(0.24) unknown(0) TCGA-06-5416-01 12 56572825 56572825 T C SMARCC2 Missense_Mutation p.D366G 0.20 deleterious(0.04) possibly_damaging(0.539) TCGA-06-5416-01 12 56600356 56600356 C T RNF41 Missense_Mutation p.A277T 0.27 tolerated(1) benign(0.048) TCGA-06-5416-01 12 56648022 56648022 G A ANKRD52 Silent p.I245I 0.18 TCGA-06-5416-01 12 56648679 56648679 G A ANKRD52 Missense_Mutation p.R174W 0.47 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 56705032 56705032 C T CNPY2 Missense_Mutation p.R124Q 0.27 tolerated(0.51) benign(0.094) TCGA-06-5416-01 12 56718375 56718375 T C PAN2 Missense_Mutation p.D573G 0.44 tolerated(0.29) benign(0.034) TCGA-06-5416-01 12 56720694 56720694 G A PAN2 Silent p.I323I 0.24 TCGA-06-5416-01 12 5672663 5672663 C A ANO2 Missense_Mutation p.Q933H 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 5672731 5672731 G T ANO2 Missense_Mutation p.L911I 0.18 deleterious(0.05) probably_damaging(0.998) TCGA-06-5416-01 12 56743925 56743925 C T STAT2 Missense_Mutation p.E389K 0.47 deleterious(0.04) benign(0.048) TCGA-06-5416-01 12 56748562 56748562 C A STAT2 Missense_Mutation p.K211N 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 12 56755225 56755225 C T APOF Silent p.Q255Q 0.45 TCGA-06-5416-01 12 56755270 56755270 C T APOF Silent p.A240A 0.46 TCGA-06-5416-01 12 56822055 56822055 G A TIMELESS Nonsense_Mutation p.R515* 0.19 TCGA-06-5416-01 12 56848177 56848177 G T MIP Missense_Mutation p.A74D 0.46 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 12 56993819 56993819 C T BAZ2A Missense_Mutation p.A1654T 0.24 deleterious(0.03) possibly_damaging(0.661) TCGA-06-5416-01 12 56995508 56995508 G T BAZ2A Missense_Mutation p.A1300D 0.16 tolerated(0.24) benign(0.059) TCGA-06-5416-01 12 56998901 56998901 G A BAZ2A Silent p.L904L 0.17 TCGA-06-5416-01 12 57007018 57007018 C T BAZ2A Splice_Site p.X308_splice 0.21 TCGA-06-5416-01 12 5708727 5708727 G A ANO2 Missense_Mutation p.S719L 0.48 tolerated(0.3) benign(0.157) TCGA-06-5416-01 12 57106306 57106306 A C NACA 3'UTR 0.26 TCGA-06-5416-01 12 57111142 57111142 C A NACA Intron 0.52 TCGA-06-5416-01 12 5724368 5724368 C T ANO2 Missense_Mutation p.A638T 0.38 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 12 57348856 57348856 C T RDH16 Missense_Mutation p.V136M 0.23 deleterious(0.01) possibly_damaging(0.805) TCGA-06-5416-01 12 57348872 57348872 G A RDH16 Silent p.F130F 0.41 TCGA-06-5416-01 12 57351011 57351011 G A RDH16 Missense_Mutation p.T79M 0.24 deleterious(0.03) probably_damaging(0.975) TCGA-06-5416-01 12 57389159 57389159 C A GPR182 Missense_Mutation p.L56I 0.22 tolerated(0.05) probably_damaging(0.947) TCGA-06-5416-01 12 57389506 57389506 G T GPR182 Silent p.R171R 0.18 TCGA-06-5416-01 12 57485752 57485752 C T NAB2 Missense_Mutation p.R310W 0.44 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 12 57490202 57490202 C A STAT6 3'UTR 0.24 TCGA-06-5416-01 12 57492587 57492587 C T STAT6 Missense_Mutation p.G685D 0.39 tolerated(0.47) benign(0.125) TCGA-06-5416-01 12 57496098 57496098 G T STAT6 Missense_Mutation p.S496Y 0.43 tolerated(0.47) benign(0.424) TCGA-06-5416-01 12 57499295 57499295 C T STAT6 Silent p.S256S 0.17 TCGA-06-5416-01 12 57571352 57571352 C T LRP1 Missense_Mutation p.R1447C 0.23 probably_damaging(0.994) TCGA-06-5416-01 12 57585199 57585199 G A LRP1 Missense_Mutation p.A2445T 0.43 possibly_damaging(0.886) TCGA-06-5416-01 12 57589082 57589082 C A LRP1 Missense_Mutation p.F2779L 0.22 possibly_damaging(0.575) TCGA-06-5416-01 12 57619508 57619508 G A NXPH4 Missense_Mutation p.S302N 0.17 tolerated(0.15) benign(0.113) TCGA-06-5416-01 12 57627804 57627804 C A SHMT2 Missense_Mutation p.S433Y 0.18 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 57628308 57628308 G T SHMT2 3'UTR 0.29 TCGA-06-5416-01 12 57629389 57629389 G A NDUFA4L2 Missense_Mutation p.S74F 0.39 deleterious(0) possibly_damaging(0.785) TCGA-06-5416-01 12 57652683 57652683 C A R3HDM2 Missense_Mutation p.S750I 0.41 tolerated(0.16) benign(0.01) TCGA-06-5416-01 12 57866269 57866269 G T ARHGAP9 3'UTR 0.20 TCGA-06-5416-01 12 57873250 57873250 C A ARHGAP9 Intron 0.33 TCGA-06-5416-01 12 57894249 57894249 G A MARS Missense_Mutation p.A413T 0.42 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 57908597 57908597 G T MARS Nonsense_Mutation p.E688* 0.23 TCGA-06-5416-01 12 57928898 57928898 T C DCTN2 Missense_Mutation p.K107E 0.17 deleterious(0.01) possibly_damaging(0.851) TCGA-06-5416-01 12 57958276 57958276 C T KIF5A Missense_Mutation p.R144C 0.16 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 57963426 57963426 G A KIF5A Silent p.T359T 0.43 TCGA-06-5416-01 12 57970134 57970134 A C KIF5A Missense_Mutation p.K724T 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 57974875 57974875 G A KIF5A Missense_Mutation p.R892Q 0.42 deleterious(0.02) benign(0.032) TCGA-06-5416-01 12 58004003 58004003 A G ARHGEF25 Missense_Mutation p.K2E 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-06-5416-01 12 58008369 58008369 T C ARHGEF25 Missense_Mutation p.F305S 0.05 deleterious(0) probably_damaging(0.964) TCGA-06-5416-01 12 58015612 58015612 G A SLC26A10 Missense_Mutation p.G232E 0.29 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 12 58018908 58018908 G T SLC26A10 Missense_Mutation p.E449D 0.20 tolerated(0.44) benign(0.173) TCGA-06-5416-01 12 58021963 58021963 G A B4GALNT1 Missense_Mutation p.T362M 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 12 58023956 58023956 G T B4GALNT1 Missense_Mutation p.Q231K 0.26 tolerated(0.05) benign(0.021) TCGA-06-5416-01 12 58158285 58158285 C T CYP27B1 Missense_Mutation p.E338K 0.41 tolerated(0.14) benign(0.017) TCGA-06-5416-01 12 58162903 58162903 G A METTL1 Missense_Mutation p.T236I 0.42 tolerated(0.09) benign(0.039) TCGA-06-5416-01 12 58197108 58197108 G A AVIL Silent p.F628F 0.45 TCGA-06-5416-01 12 58220776 58220776 T C CTDSP2 Intron 0.42 TCGA-06-5416-01 12 58345601 58345601 G A XRCC6BP1 Missense_Mutation p.E126K 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 58345669 58345669 G A XRCC6BP1 Silent p.A148A 0.44 TCGA-06-5416-01 12 59271223 59271223 T C LRIG3 Missense_Mutation p.H832R 0.44 deleterious(0.05) probably_damaging(0.999) TCGA-06-5416-01 12 59281596 59281596 G A LRIG3 Missense_Mutation p.R356W 0.17 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 12 60168949 60168949 C T SLC16A7 Silent p.F291F 0.39 TCGA-06-5416-01 12 60173250 60173250 C T SLC16A7 Silent p.S409S 0.40 TCGA-06-5416-01 12 6030380 6030380 G A ANO2 Silent p.G116G 0.14 TCGA-06-5416-01 12 6031971 6031971 C A ANO2 Splice_Site p.X4_splice 0.12 TCGA-06-5416-01 12 6134760 6134760 C T VWF Missense_Mutation p.D1070N 0.46 deleterious(0.01) benign(0.093) TCGA-06-5416-01 12 6161886 6161886 C T VWF Missense_Mutation p.R670H 0.41 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 12 6173532 6173532 C T VWF Missense_Mutation p.A438T 0.15 deleterious(0.03) possibly_damaging(0.771) TCGA-06-5416-01 12 6181512 6181512 C T VWF Missense_Mutation p.R365Q 0.40 tolerated(1) benign(0) TCGA-06-5416-01 12 6181567 6181567 C T VWF Missense_Mutation p.E347K 0.25 tolerated(0.08) benign(0.192) TCGA-06-5416-01 12 62783662 62783662 T G USP15 Missense_Mutation p.Y580D 0.19 tolerated(0.17) benign(0.003) TCGA-06-5416-01 12 62784698 62784698 C T USP15 Silent p.C633C 0.19 TCGA-06-5416-01 12 62943575 62943575 G T MON2 Nonsense_Mutation p.E961* 0.19 TCGA-06-5416-01 12 63226014 63226014 G T PPM1H Missense_Mutation p.S97R 0.46 tolerated(0.08) benign(0.007) TCGA-06-5416-01 12 6341809 6341809 C A CD9 Missense_Mutation p.L63M 0.69 deleterious(0.03) possibly_damaging(0.803) TCGA-06-5416-01 12 6428134 6428134 C A PLEKHG6 Intron 0.11 TCGA-06-5416-01 12 6438710 6438710 C T TNFRSF1A Missense_Mutation p.G379E 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 64509594 64509594 C T SRGAP1 Silent p.C715C 0.43 TCGA-06-5416-01 12 6463653 6463653 C T SCNN1A Silent p.P496P 0.26 TCGA-06-5416-01 12 6463991 6463991 G A SCNN1A Silent p.G448G 0.41 TCGA-06-5416-01 12 64816819 64816819 T C XPOT Missense_Mutation p.V372A 0.31 tolerated(0.17) benign(0.007) TCGA-06-5416-01 12 64828310 64828310 T C XPOT Silent p.L826L 0.40 TCGA-06-5416-01 12 64829453 64829453 G A XPOT Missense_Mutation p.R911Q 0.33 tolerated(0.11) benign(0.018) TCGA-06-5416-01 12 64891754 64891754 G T TBK1 Missense_Mutation p.K691N 0.34 tolerated(0.07) possibly_damaging(0.798) TCGA-06-5416-01 12 64895325 64895325 T G TBK1 3'UTR 0.36 TCGA-06-5416-01 12 65088587 65088587 C A RASSF3 Silent p.I204I 0.49 TCGA-06-5416-01 12 65448900 65448900 T G WIF1 Missense_Mutation p.K339T 0.24 deleterious(0.02) probably_damaging(0.994) TCGA-06-5416-01 12 65563516 65563516 G A LEMD3 Missense_Mutation p.R47Q 0.28 deleterious(0) possibly_damaging(0.716) TCGA-06-5416-01 12 6562873 6562873 C T TAPBPL Nonsense_Mutation p.R186* 0.34 TCGA-06-5416-01 12 6567842 6567842 C T TAPBPL Silent p.N312N 0.14 TCGA-06-5416-01 12 66152381 66152381 A G RPSAP52 RNA 0.49 TCGA-06-5416-01 12 6623996 6623996 C T NCAPD2 Silent p.G299G 0.45 TCGA-06-5416-01 12 66308674 66308674 C T HMGA2 Intron 0.19 TCGA-06-5416-01 12 66308793 66308793 C T HMGA2 Intron 0.23 TCGA-06-5416-01 12 6632078 6632078 C A NCAPD2 Missense_Mutation p.P680H 0.42 deleterious(0.04) benign(0.433) TCGA-06-5416-01 12 66622062 66622062 C T IRAK3 Nonsense_Mutation p.R267* 0.44 TCGA-06-5416-01 12 66622067 66622067 C T IRAK3 Silent p.I268I 0.16 TCGA-06-5416-01 12 66696394 66696394 C T HELB Missense_Mutation p.S4L 0.35 tolerated(0.47) unknown(0) TCGA-06-5416-01 12 66703614 66703614 G A HELB Silent p.K302K 0.20 TCGA-06-5416-01 12 66703849 66703849 G A HELB Missense_Mutation p.D381N 0.23 deleterious(0.04) probably_damaging(0.951) TCGA-06-5416-01 12 66703903 66703903 G A HELB Missense_Mutation p.D399N 0.22 tolerated(0.16) benign(0.001) TCGA-06-5416-01 12 66709094 66709094 G T HELB Missense_Mutation p.R644I 0.48 deleterious(0.04) possibly_damaging(0.588) TCGA-06-5416-01 12 6672626 6672626 C T NOP2 Missense_Mutation p.G281E 0.28 tolerated(1) benign(0.003) TCGA-06-5416-01 12 66742997 66742997 G T GRIP1 Missense_Mutation p.D1011E 0.05 deleterious(0.04) probably_damaging(0.99) TCGA-06-5416-01 12 66770984 66770984 G A GRIP1 Silent p.C849C 0.47 TCGA-06-5416-01 12 66935717 66935717 G A GRIP1 Silent p.G50G 0.05 TCGA-06-5416-01 12 6696650 6696650 C T CHD4 Missense_Mutation p.R1260H 0.40 deleterious(0) benign(0.028) TCGA-06-5416-01 12 6696709 6696709 C A CHD4 Missense_Mutation p.E1240D 0.22 tolerated(0.38) possibly_damaging(0.636) TCGA-06-5416-01 12 6753766 6753766 C A ACRBP Nonsense_Mutation p.E161* 0.27 TCGA-06-5416-01 12 6761930 6761930 C T ING4 Missense_Mutation p.R133Q 0.41 deleterious(0.05) benign(0.285) TCGA-06-5416-01 12 67696164 67696164 G A CAND1 Silent p.A354A 0.46 TCGA-06-5416-01 12 67696291 67696291 G A CAND1 Missense_Mutation p.A397T 0.24 tolerated(0.18) possibly_damaging(0.899) TCGA-06-5416-01 12 6777057 6777057 T G ZNF384 Silent p.P519P 0.49 TCGA-06-5416-01 12 6778211 6778211 G A ZNF384 Missense_Mutation p.R440W 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 68043673 68043673 C T DYRK2 Missense_Mutation p.P49L 0.42 deleterious_low_confidence(0.01) benign(0.026) TCGA-06-5416-01 12 68051243 68051243 C A DYRK2 Missense_Mutation p.L186I 0.38 tolerated(0.18) benign(0.001) TCGA-06-5416-01 12 68051259 68051259 G A DYRK2 Missense_Mutation p.R191H 0.22 tolerated(0.19) probably_damaging(0.976) TCGA-06-5416-01 12 68051740 68051740 C T DYRK2 Silent p.P351P 0.18 TCGA-06-5416-01 12 68051743 68051743 G T DYRK2 Missense_Mutation p.E352D 0.19 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 12 68051819 68051819 C T DYRK2 Missense_Mutation p.R378C 0.38 deleterious(0.01) benign(0.227) TCGA-06-5416-01 12 68052445 68052445 C A DYRK2 Silent p.A586A 0.18 TCGA-06-5416-01 12 68647213 68647213 T G IL22 Missense_Mutation p.K6Q 0.49 deleterious(0.01) probably_damaging(0.926) TCGA-06-5416-01 12 68689131 68689131 G A MDM1 Missense_Mutation p.S683F 0.51 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 68720427 68720427 A G MDM1 Intron 0.53 TCGA-06-5416-01 12 68720438 68720438 C T MDM1 Missense_Mutation p.G166E 0.37 deleterious(0.01) possibly_damaging(0.786) TCGA-06-5416-01 12 69047956 69047956 C T RAP1B Missense_Mutation p.S83F 0.41 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 12 69050098 69050098 C A RAP1B Missense_Mutation p.L113I 0.20 tolerated(0.14) possibly_damaging(0.663) TCGA-06-5416-01 12 69129079 69129079 C T NUP107 Silent p.N819N 0.45 TCGA-06-5416-01 12 69218164 69218164 C T MDM2 Missense_Mutation p.S127F 0.43 deleterious(0.01) benign(0.351) TCGA-06-5416-01 12 6925523 6925523 G A CD4 Silent p.A303A 0.43 TCGA-06-5416-01 12 6932978 6932978 T C GPR162 5'UTR 0.17 TCGA-06-5416-01 12 6946220 6946220 C T LEPREL2 Silent p.F509F 0.13 TCGA-06-5416-01 12 6952162 6952162 G A GNB3 Missense_Mutation p.R42Q 0.44 tolerated(0.27) benign(0.014) TCGA-06-5416-01 12 69784103 69784103 C A YEATS4 3'UTR 0.45 TCGA-06-5416-01 12 69991749 69991749 C T CCT2 Silent p.G411G 0.31 TCGA-06-5416-01 12 70003998 70003998 G A LRRC10 Silent p.S207S 0.23 TCGA-06-5416-01 12 70188238 70188238 G A RAB3IP Missense_Mutation p.E226K 0.15 deleterious(0.03) possibly_damaging(0.842) TCGA-06-5416-01 12 70206635 70206635 T C RAB3IP Missense_Mutation p.I419T 0.48 deleterious(0) possibly_damaging(0.855) TCGA-06-5416-01 12 7026258 7026258 G A ENO2 Silent p.G99G 0.42 TCGA-06-5416-01 12 7048072 7048072 C T ATN1 Silent p.G982G 0.49 TCGA-06-5416-01 12 7064071 7064071 G T PTPN6 Missense_Mutation p.D144Y 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 70672001 70672001 G A CNOT2 5'UTR 0.15 TCGA-06-5416-01 12 70724190 70724190 G A CNOT2 Silent p.S170S 0.21 TCGA-06-5416-01 12 7086802 7086802 G A LPCAT3 Silent p.V382V 0.41 TCGA-06-5416-01 12 70933755 70933755 C T PTPRB Missense_Mutation p.R1881Q 0.23 deleterious(0.03) possibly_damaging(0.674) TCGA-06-5416-01 12 7173237 7173237 G A C1S Silent p.G278G 0.41 TCGA-06-5416-01 12 7187955 7187955 G A C1R Missense_Mutation p.R615C 0.51 deleterious(0.01) possibly_damaging(0.794) TCGA-06-5416-01 12 7188394 7188394 G A C1R Silent p.F468F 0.25 TCGA-06-5416-01 12 71950420 71950420 C T LGR5 Silent p.I222I 0.22 TCGA-06-5416-01 12 71955587 71955587 C T LGR5 Missense_Mutation p.S271L 0.48 tolerated(0.15) benign(0.044) TCGA-06-5416-01 12 71966698 71966698 C T LGR5 Missense_Mutation p.S402L 0.20 tolerated(0.34) benign(0.415) TCGA-06-5416-01 12 72003993 72003993 G A ZFC3H1 3'UTR 0.28 TCGA-06-5416-01 12 72024717 72024717 C T ZFC3H1 Missense_Mutation p.R1163Q 0.39 deleterious(0.03) probably_damaging(0.961) TCGA-06-5416-01 12 72056795 72056795 C T ZFC3H1 Missense_Mutation p.S199N 0.21 tolerated(0.42) benign(0.213) TCGA-06-5416-01 12 72092781 72092781 G T TMEM19 Missense_Mutation p.D247Y 0.17 deleterious(0.02) probably_damaging(0.988) TCGA-06-5416-01 12 72288108 72288108 G T TBC1D15 Nonsense_Mutation p.G221* 0.16 TCGA-06-5416-01 12 72332719 72332719 C T TPH2 5'UTR 0.22 TCGA-06-5416-01 12 7249191 7249191 G T C1RL Missense_Mutation p.F420L 0.21 deleterious(0) possibly_damaging(0.731) TCGA-06-5416-01 12 72893299 72893299 G A TRHDE Missense_Mutation p.D491N 0.20 tolerated(0.13) probably_damaging(0.918) TCGA-06-5416-01 12 7355281 7355281 G A PEX5 Missense_Mutation p.R291Q 0.48 tolerated(1) benign(0.004) TCGA-06-5416-01 12 7463273 7463273 A T ACSM4 Missense_Mutation p.D184V 0.55 tolerated(0.48) benign(0.102) TCGA-06-5416-01 12 7476905 7476905 G A ACSM4 Missense_Mutation p.D449N 0.25 tolerated(0.36) benign(0.004) TCGA-06-5416-01 12 7522153 7522153 G A CD163L1 Missense_Mutation p.A1280V 0.17 deleterious(0) probably_damaging(0.924) TCGA-06-5416-01 12 7526041 7526041 G T CD163L1 Missense_Mutation p.S1202Y 0.21 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 12 75444697 75444697 C T KCNC2 Missense_Mutation p.R363H 0.47 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 12 75741428 75741428 C T GLIPR1L1 Silent p.V149V 0.09 TCGA-06-5416-01 12 75816894 75816894 G A GLIPR1L2 Intron 0.22 TCGA-06-5416-01 12 75816974 75816974 T G GLIPR1L2 Intron 0.33 TCGA-06-5416-01 12 75892445 75892445 T G KRR1 3'UTR 0.26 TCGA-06-5416-01 12 75897741 75897741 C A KRR1 Missense_Mutation p.K258N 0.24 tolerated(0.17) benign(0.133) TCGA-06-5416-01 12 7639154 7639154 G A CD163 Missense_Mutation p.S800L 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 76447583 76447583 G T NAP1L1 Missense_Mutation p.S246Y 0.24 deleterious(0.01) benign(0.183) TCGA-06-5416-01 12 76741292 76741292 G A BBS10 Missense_Mutation p.S158L 0.21 deleterious(0) possibly_damaging(0.56) TCGA-06-5416-01 12 76763522 76763522 G A OSBPL8 Missense_Mutation p.A712V 0.25 deleterious(0.02) benign(0.151) TCGA-06-5416-01 12 76780422 76780422 A C OSBPL8 Missense_Mutation p.N457K 0.41 deleterious(0.02) probably_damaging(0.953) TCGA-06-5416-01 12 76844736 76844736 G A OSBPL8 Silent p.L38L 0.23 TCGA-06-5416-01 12 76853672 76853672 G T OSBPL8 Missense_Mutation p.L16I 0.21 tolerated_low_confidence(0.53) benign(0.002) TCGA-06-5416-01 12 76881291 76881291 G A OSBPL8 Missense_Mutation p.S14L 0.42 tolerated_low_confidence(0.19) benign(0) TCGA-06-5416-01 12 77216189 77216189 G A ZDHHC17 Missense_Mutation p.E259K 0.17 deleterious(0.01) possibly_damaging(0.81) TCGA-06-5416-01 12 77252766 77252766 C T CSRP2 Missense_Mutation p.G183D 0.19 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 12 77449659 77449659 G A E2F7 Silent p.D115D 0.35 TCGA-06-5416-01 12 7848292 7848292 G A GDF3 Silent p.S11S 0.19 TCGA-06-5416-01 12 78531006 78531006 G A NAV3 Missense_Mutation p.M1497I 0.51 tolerated(0.14) possibly_damaging(0.647) TCGA-06-5416-01 12 78574660 78574660 G A NAV3 Missense_Mutation p.E1821K 0.23 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 78593232 78593232 A C NAV3 Missense_Mutation p.K2190N 0.48 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 12 78598777 78598777 G T NAV3 Missense_Mutation p.W2277C 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 78604209 78604209 C T NAV3 Missense_Mutation p.A2335V 0.41 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 7942261 7942261 C T NANOG Silent p.S17S 0.37 TCGA-06-5416-01 12 7947087 7947087 C A NANOG Missense_Mutation p.S150Y 0.26 tolerated(0.4) benign(0.014) TCGA-06-5416-01 12 7981426 7981426 G A SLC2A14 Silent p.L207L 0.18 TCGA-06-5416-01 12 80615943 80615943 G A OTOGL Missense_Mutation p.G127D 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 80615965 80615965 A T OTOGL Silent p.G134G 0.23 TCGA-06-5416-01 12 80658898 80658898 G A OTOGL Missense_Mutation p.S702N 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 12 80714296 80714296 G A OTOGL Silent p.A1290A 0.18 TCGA-06-5416-01 12 81528597 81528597 C T ACSS3 Silent p.V153V 0.39 TCGA-06-5416-01 12 81528766 81528766 C T ACSS3 Missense_Mutation p.R210C 0.12 deleterious(0) possibly_damaging(0.677) TCGA-06-5416-01 12 81532938 81532938 G T ACSS3 Missense_Mutation p.G225V 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 81627251 81627251 G A ACSS3 Splice_Site p.X573_splice 0.47 TCGA-06-5416-01 12 81747109 81747109 G T PPFIA2 Missense_Mutation p.L595I 0.26 deleterious(0.04) benign(0.012) TCGA-06-5416-01 12 8205372 8205372 C T FOXJ2 Missense_Mutation p.P551S 0.18 tolerated(0.09) benign(0.01) TCGA-06-5416-01 12 8212582 8212582 G A C3AR1 Missense_Mutation p.A67V 0.33 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 12 8244400 8244400 C T NECAP1 Missense_Mutation p.R113W 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 82751036 82751036 G T CCDC59 Missense_Mutation p.A56D 0.17 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 12 82832553 82832553 T G METTL25 Missense_Mutation p.C487W 0.24 tolerated(0.18) possibly_damaging(0.778) TCGA-06-5416-01 12 8289500 8289500 G A CLEC4A Splice_Site p.X189_splice 0.18 TCGA-06-5416-01 12 83250962 83250962 G T TMTC2 Missense_Mutation p.S86I 0.39 deleterious(0) benign(0.436) TCGA-06-5416-01 12 85266490 85266490 A G SLC6A15 Missense_Mutation p.V398A 0.16 tolerated(0.2) benign(0.006) TCGA-06-5416-01 12 85285670 85285670 A C SLC6A15 Missense_Mutation p.F77C 0.21 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 12 85450289 85450289 A C LRRIQ1 Missense_Mutation p.K573T 0.26 deleterious(0.04) benign(0.223) TCGA-06-5416-01 12 85466838 85466838 C A LRRIQ1 Nonsense_Mutation p.S950* 0.18 TCGA-06-5416-01 12 85466857 85466857 C A LRRIQ1 Silent p.I956I 0.21 TCGA-06-5416-01 12 85500312 85500312 C T LRRIQ1 Missense_Mutation p.A1099V 0.17 tolerated(1) benign(0.002) TCGA-06-5416-01 12 85695276 85695276 C A ALX1 3'UTR 0.16 TCGA-06-5416-01 12 86276255 86276255 C A NTS 3'UTR 0.45 TCGA-06-5416-01 12 86373887 86373887 T C MGAT4C Missense_Mutation p.Y206C 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 8673762 8673762 C A CLEC4D Missense_Mutation p.N181K 0.39 tolerated(0.48) benign(0.093) TCGA-06-5416-01 12 8689827 8689827 A G CLEC4E Missense_Mutation p.Y86H 0.22 tolerated(0.63) benign(0.001) TCGA-06-5416-01 12 8757973 8757973 C T AICDA Missense_Mutation p.D89N 0.42 tolerated(0.61) benign(0.017) TCGA-06-5416-01 12 88376927 88376927 C T C12orf50 Missense_Mutation p.R391Q 0.34 deleterious(0.01) benign(0.211) TCGA-06-5416-01 12 88388483 88388483 A G C12orf50 Silent p.Y173Y 0.41 TCGA-06-5416-01 12 88390373 88390373 C T C12orf50 Missense_Mutation p.A114T 0.35 deleterious(0.03) possibly_damaging(0.447) TCGA-06-5416-01 12 88522770 88522770 C T CEP290 Missense_Mutation p.D299N 0.16 probably_damaging(0.999) TCGA-06-5416-01 12 88912550 88912550 C A KITLG Missense_Mutation p.S96I 0.25 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 12 88928488 88928488 G A KITLG Intron 0.26 TCGA-06-5416-01 12 89860697 89860697 G T POC1B Silent p.V294V 0.22 TCGA-06-5416-01 12 89985005 89985005 G A ATP2B1 Missense_Mutation p.S1140L 0.37 deleterious_low_confidence(0.02) probably_damaging(0.994) TCGA-06-5416-01 12 89997597 89997597 G A ATP2B1 Missense_Mutation p.R914W 0.49 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 9004934 9004934 T C A2ML1 Splice_Site p.X864_splice 0.48 TCGA-06-5416-01 12 9070357 9070357 A T PHC1 Missense_Mutation p.Q28H 0.22 tolerated(0.26) benign(0.143) TCGA-06-5416-01 12 9089854 9089854 C T PHC1 Missense_Mutation p.R854C 0.42 deleterious(0) unknown(0) TCGA-06-5416-01 12 91347677 91347677 C A CCER1 Missense_Mutation p.E281D 0.42 tolerated(0.14) benign(0.388) TCGA-06-5416-01 12 91372003 91372003 C A EPYC Nonsense_Mutation p.E68* 0.15 TCGA-06-5416-01 12 9142231 9142231 G T KLRG1 5'UTR 0.16 TCGA-06-5416-01 12 91449388 91449388 G A KERA Missense_Mutation p.S224F 0.20 deleterious(0.04) possibly_damaging(0.805) TCGA-06-5416-01 12 91539866 91539866 C T DCN Missense_Mutation p.R350H 0.46 tolerated(0.05) benign(0.007) TCGA-06-5416-01 12 91539879 91539879 A G DCN Missense_Mutation p.C346R 0.44 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 12 9227174 9227174 G A A2M Silent p.G1246G 0.52 TCGA-06-5416-01 12 9254240 9254240 C T A2M Missense_Mutation p.G433S 0.17 tolerated(0.42) benign(0.002) TCGA-06-5416-01 12 9256970 9256970 G A A2M Silent p.V377V 0.12 TCGA-06-5416-01 12 9264785 9264785 C T A2M Missense_Mutation p.M151I 0.18 deleterious(0.03) benign(0.002) TCGA-06-5416-01 12 9265986 9265986 C A A2M Missense_Mutation p.E80D 0.28 tolerated(0.32) benign(0.005) TCGA-06-5416-01 12 92816360 92816360 G A CLLU1OS Silent p.G35G 0.45 TCGA-06-5416-01 12 9305877 9305877 C A PZP Missense_Mutation p.E1279D 0.41 tolerated(0.36) benign(0.054) TCGA-06-5416-01 12 9309939 9309939 G A PZP Missense_Mutation p.R1128C 0.18 deleterious(0.02) possibly_damaging(0.88) TCGA-06-5416-01 12 93100702 93100702 C T C12orf74 Silent p.L99L 0.17 TCGA-06-5416-01 12 93162794 93162794 G A PLEKHG7 Missense_Mutation p.E324K 0.26 deleterious(0.03) benign(0.022) TCGA-06-5416-01 12 93164004 93164004 G T PLEKHG7 3'UTR 0.26 TCGA-06-5416-01 12 93164080 93164080 T G PLEKHG7 3'UTR 0.15 TCGA-06-5416-01 12 93175761 93175761 G A EEA1 Nonsense_Mutation p.R1101* 0.37 TCGA-06-5416-01 12 93258637 93258637 G T EEA1 Silent p.R82R 0.19 TCGA-06-5416-01 12 93285419 93285419 C T EEA1 Missense_Mutation p.E35K 0.38 deleterious(0) benign(0.345) TCGA-06-5416-01 12 9356466 9356466 C A PZP Missense_Mutation p.E55D 0.47 deleterious(0) possibly_damaging(0.755) TCGA-06-5416-01 12 939257 939257 G T WNK1 Missense_Mutation p.E414D 0.25 deleterious(0) unknown(0) TCGA-06-5416-01 12 93968645 93968645 G A SOCS2 Missense_Mutation p.R96Q 0.48 deleterious(0) probably_damaging(0.912) TCGA-06-5416-01 12 94620934 94620934 C A PLXNC1 Missense_Mutation p.P635T 0.49 tolerated(0.59) benign(0.029) TCGA-06-5416-01 12 94688288 94688288 C A PLXNC1 Silent p.V1302V 0.39 TCGA-06-5416-01 12 94761954 94761954 G T CCDC41 Missense_Mutation p.L358I 0.21 tolerated(0.07) probably_damaging(0.998) TCGA-06-5416-01 12 94794720 94794720 C T CCDC41 Missense_Mutation p.R152H 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 94806288 94806288 C A CCDC41 5'UTR 0.40 TCGA-06-5416-01 12 94965510 94965510 C T TMCC3 Missense_Mutation p.A379T 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 12 94972298 94972298 G A TMCC3 Nonsense_Mutation p.R335* 0.50 TCGA-06-5416-01 12 95228202 95228202 G A MIR492 RNA 0.42 TCGA-06-5416-01 12 95452251 95452251 C T NR2C1 Missense_Mutation p.A127T 0.41 deleterious(0) benign(0.364) TCGA-06-5416-01 12 95603202 95603202 C T FGD6 Missense_Mutation p.D620N 0.21 deleterious(0.04) benign(0.111) TCGA-06-5416-01 12 95604272 95604272 C T FGD6 Missense_Mutation p.S263N 0.24 tolerated_low_confidence(0.4) benign(0.008) TCGA-06-5416-01 12 95927680 95927680 C A USP44 Missense_Mutation p.R118M 0.22 deleterious(0) benign(0.259) TCGA-06-5416-01 12 96300226 96300226 G T CCDC38 Missense_Mutation p.S103Y 0.34 deleterious(0.01) possibly_damaging(0.514) TCGA-06-5416-01 12 96312680 96312680 C T CCDC38 Missense_Mutation p.E38K 0.20 tolerated(0.05) benign(0.091) TCGA-06-5416-01 12 96350581 96350581 A G AMDHD1 Missense_Mutation p.Q143R 0.44 tolerated(0.49) benign(0.005) TCGA-06-5416-01 12 96370260 96370260 G A HAL Missense_Mutation p.R594C 0.40 deleterious(0) probably_damaging(1) TCGA-06-5416-01 12 96371738 96371738 G A HAL Silent p.I546I 0.23 TCGA-06-5416-01 12 96384171 96384171 G A HAL Silent p.Y285Y 0.49 TCGA-06-5416-01 12 96429209 96429209 A C LTA4H Missense_Mutation p.F30C 0.34 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 12 966375 966375 G A WNK1 Missense_Mutation p.E454K 0.19 deleterious(0) unknown(0) TCGA-06-5416-01 12 97045404 97045404 G A C12orf55 Silent p.Q1637Q 0.43 TCGA-06-5416-01 12 97051808 97051808 C A C12orf55 Missense_Mutation p.S1750Y 0.19 deleterious(0) possibly_damaging(0.736) TCGA-06-5416-01 12 978070 978070 G A WNK1 Intron 0.43 TCGA-06-5416-01 12 978112 978112 G T WNK1 Intron 0.47 TCGA-06-5416-01 12 98849821 98849821 G A SLC9A7P1 RNA 0.17 TCGA-06-5416-01 12 98941596 98941596 T A TMPO Missense_Mutation p.F333Y 0.20 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 12 98992359 98992359 C A SLC25A3 Missense_Mutation p.F174L 0.21 tolerated(0.13) benign(0.434) TCGA-06-5416-01 12 98993663 98993663 C A SLC25A3 Intron 0.24 TCGA-06-5416-01 12 99007880 99007880 A G IKBIP Missense_Mutation p.I179T 0.42 deleterious(0) benign(0.073) TCGA-06-5416-01 12 99139604 99139604 C A ANKS1B Intron 0.20 TCGA-06-5416-01 12 99640429 99640429 G A ANKS1B Missense_Mutation p.S657L 0.47 tolerated(0.17) benign(0.021) TCGA-06-5416-01 12 9986028 9986028 C T KLRF1 Missense_Mutation p.S105L 0.12 tolerated(0.14) benign(0.013) TCGA-06-5416-01 13 100169935 100169935 C T TM9SF2 Missense_Mutation p.A80V 0.46 tolerated(0.12) benign(0.047) TCGA-06-5416-01 13 100206560 100206560 C T TM9SF2 Silent p.A497A 0.48 TCGA-06-5416-01 13 100206623 100206623 G A TM9SF2 Silent p.T518T 0.21 TCGA-06-5416-01 13 100617957 100617957 G A ZIC5 Nonsense_Mutation p.R556* 0.35 TCGA-06-5416-01 13 100623854 100623854 C T ZIC5 Missense_Mutation p.E26K 0.29 deleterious(0) unknown(0) TCGA-06-5416-01 13 100635212 100635212 C T ZIC2 Silent p.S298S 0.27 TCGA-06-5416-01 13 100637698 100637698 C T ZIC2 Missense_Mutation p.S454F 0.65 deleterious(0.01) possibly_damaging(0.795) TCGA-06-5416-01 13 101257129 101257129 G T TMTC4 3'UTR 0.24 TCGA-06-5416-01 13 101717877 101717877 G A NALCN Missense_Mutation p.R1495W 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 101833369 101833369 C T NALCN Intron 0.31 TCGA-06-5416-01 13 101997614 101997614 G T NALCN Intron 0.20 TCGA-06-5416-01 13 102227849 102227849 T C ITGBL1 Missense_Mutation p.C180R 0.04 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 102368064 102368064 C T ITGBL1 3'UTR 0.56 TCGA-06-5416-01 13 102527590 102527590 G A FGF14 Nonsense_Mutation p.Q89* 0.29 TCGA-06-5416-01 13 103343231 103343231 G A METTL21C Missense_Mutation p.R72W 0.27 tolerated(0.2) benign(0.002) TCGA-06-5416-01 13 103449317 103449317 G T KDELC1 Silent p.V75V 0.24 TCGA-06-5416-01 13 103468891 103468891 G T BIVM-ERCC5 Missense_Mutation p.D170Y 0.52 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-06-5416-01 13 103468901 103468901 G A BIVM-ERCC5 Missense_Mutation p.R173Q 0.24 deleterious_low_confidence(0) possibly_damaging(0.776) TCGA-06-5416-01 13 103498666 103498666 T C ERCC5 Missense_Mutation p.V17A 0.25 deleterious(0.02) benign(0.329) TCGA-06-5416-01 13 103718459 103718459 G T SLC10A2 Missense_Mutation p.F47L 0.52 tolerated(0.1) benign(0.313) TCGA-06-5416-01 13 108518962 108518962 C T FAM155A 5'UTR 0.57 TCGA-06-5416-01 13 108861878 108861878 C T LIG4 Missense_Mutation p.R580Q 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 13 108862739 108862739 C T LIG4 Missense_Mutation p.R293Q 0.52 deleterious(0) probably_damaging(1) TCGA-06-5416-01 13 109318489 109318489 A G MYO16 Missense_Mutation p.D73G 0.24 deleterious(0) probably_damaging(0.942) TCGA-06-5416-01 13 109379794 109379794 C A MYO16 Silent p.R102R 0.18 TCGA-06-5416-01 13 109475514 109475514 G A MYO16 Missense_Mutation p.A307T 0.58 deleterious(0) possibly_damaging(0.881) TCGA-06-5416-01 13 110838746 110838746 G A COL4A1 Missense_Mutation p.S628F 0.22 benign(0.002) TCGA-06-5416-01 13 110839601 110839601 G A COL4A1 Missense_Mutation p.R538W 0.27 possibly_damaging(0.505) TCGA-06-5416-01 13 111086790 111086790 G A COL4A2 Splice_Site p.X242_splice 0.28 TCGA-06-5416-01 13 111164350 111164350 C T COL4A2 Missense_Mutation p.R1651C 0.28 unknown(0) TCGA-06-5416-01 13 111287789 111287789 T G CARKD Intron 0.26 TCGA-06-5416-01 13 111298343 111298343 C T CARS2 Missense_Mutation p.G430R 0.23 deleterious(0) possibly_damaging(0.908) TCGA-06-5416-01 13 111315842 111315842 C A CARS2 Nonsense_Mutation p.E315* 0.37 TCGA-06-5416-01 13 111371778 111371778 C T ING1 Silent p.F256F 0.32 TCGA-06-5416-01 13 111973266 111973266 C T TEX29 Missense_Mutation p.S10F 0.25 deleterious(0) possibly_damaging(0.683) TCGA-06-5416-01 13 113055470 113055470 C T SPACA7 Missense_Mutation p.S146F 0.52 tolerated(0.14) benign(0.061) TCGA-06-5416-01 13 113140301 113140301 C T TUBGCP3 3'UTR 0.23 TCGA-06-5416-01 13 113505361 113505361 G A ATP11A Missense_Mutation p.R607Q 0.28 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 13 113536344 113536344 G A ATP11A 3'UTR 0.30 TCGA-06-5416-01 13 113633980 113633980 C T MCF2L Intron 0.41 TCGA-06-5416-01 13 113770060 113770060 C T F7 Missense_Mutation p.R173W 0.16 tolerated(0.22) benign(0.001) TCGA-06-5416-01 13 113783905 113783905 C A F10 Silent p.V70V 0.34 TCGA-06-5416-01 13 114107564 114107564 G A ADPRHL1 Silent p.I63I 0.30 TCGA-06-5416-01 13 114112395 114112395 A G DCUN1D2 Silent p.F243F 0.29 TCGA-06-5416-01 13 114138202 114138202 T C DCUN1D2 Missense_Mutation p.N58S 0.22 tolerated(1) benign(0) TCGA-06-5416-01 13 114325844 114325844 C T GRK1 Silent p.N286N 0.22 TCGA-06-5416-01 13 114469087 114469087 G T TMEM255B Splice_Site p.X16_splice 0.31 TCGA-06-5416-01 13 114542804 114542804 C T GAS6 Silent p.T121T 0.32 TCGA-06-5416-01 13 114766341 114766341 G A RASA3 Missense_Mutation p.R604C 0.30 tolerated(0.12) benign(0.017) TCGA-06-5416-01 13 114792876 114792876 A G RASA3 Missense_Mutation p.F198L 0.53 deleterious(0.04) possibly_damaging(0.904) TCGA-06-5416-01 13 114792925 114792925 C A RASA3 Missense_Mutation p.K181N 0.22 deleterious(0) possibly_damaging(0.688) TCGA-06-5416-01 13 115057115 115057115 C T UPF3A Nonsense_Mutation p.R232* 0.37 TCGA-06-5416-01 13 115089323 115089323 A C CHAMP1 Missense_Mutation p.E2D 0.17 tolerated(0.8) probably_damaging(0.994) TCGA-06-5416-01 13 115089621 115089621 G T CHAMP1 Nonsense_Mutation p.E102* 0.13 TCGA-06-5416-01 13 115089646 115089646 C A CHAMP1 Missense_Mutation p.P110H 0.15 tolerated(0.53) possibly_damaging(0.58) TCGA-06-5416-01 13 20024238 20024238 C T TPTE2 Silent p.A317A 0.23 TCGA-06-5416-01 13 20025334 20025334 C T TPTE2 Missense_Mutation p.R258Q 0.24 tolerated(0.63) benign(0.006) TCGA-06-5416-01 13 20048055 20048055 C A TPTE2 Missense_Mutation p.G131W 0.67 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 13 20220949 20220949 C T MPHOSPH8 Missense_Mutation p.P246S 0.25 tolerated_low_confidence(0.93) benign(0) TCGA-06-5416-01 13 20279902 20279902 C A PSPC1 Missense_Mutation p.R429I 0.31 deleterious(0.04) possibly_damaging(0.766) TCGA-06-5416-01 13 20283736 20283736 C A PSPC1 Nonsense_Mutation p.E388* 0.52 TCGA-06-5416-01 13 20567324 20567324 C T ZMYM2 Missense_Mutation p.P38S 0.31 deleterious_low_confidence(0.02) benign(0.056) TCGA-06-5416-01 13 20567402 20567402 G A ZMYM2 Missense_Mutation p.E64K 0.58 deleterious_low_confidence(0.02) probably_damaging(0.995) TCGA-06-5416-01 13 20608468 20608468 C T ZMYM2 Silent p.C681C 0.25 TCGA-06-5416-01 13 20797017 20797017 A C GJB6 Missense_Mutation p.I201M 0.23 deleterious(0.03) possibly_damaging(0.578) TCGA-06-5416-01 13 21013823 21013823 C T CRYL1 Missense_Mutation p.R116Q 0.30 tolerated_low_confidence(0.53) benign(0.019) TCGA-06-5416-01 13 21217622 21217622 G A IFT88 Missense_Mutation p.A580T 0.57 deleterious(0) possibly_damaging(0.884) TCGA-06-5416-01 13 21401217 21401217 G A XPO4 Missense_Mutation p.L277F 0.47 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 13 21549116 21549116 G A LATS2 Nonsense_Mutation p.R1054* 0.60 TCGA-06-5416-01 13 21563286 21563286 G A LATS2 Silent p.Y211Y 0.38 TCGA-06-5416-01 13 21619956 21619956 G A LATS2 Silent p.F70F 0.56 TCGA-06-5416-01 13 21734084 21734084 G A SKA3 Missense_Mutation p.T291I 0.55 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 13 21987876 21987876 T G ZDHHC20 Missense_Mutation p.E95D 0.51 deleterious(0.05) possibly_damaging(0.777) TCGA-06-5416-01 13 22246094 22246094 G A FGF9 Missense_Mutation p.D15N 0.24 deleterious(0.03) benign(0.227) TCGA-06-5416-01 13 23903594 23903594 T G SACS 3'UTR 0.27 TCGA-06-5416-01 13 23911250 23911250 A G SACS Silent p.C2255C 0.25 TCGA-06-5416-01 13 23912385 23912385 C T SACS Missense_Mutation p.R1877Q 0.27 probably_damaging(0.99) TCGA-06-5416-01 13 23913029 23913029 C T SACS Silent p.T1662T 0.59 TCGA-06-5416-01 13 23914027 23914027 C A SACS Missense_Mutation p.D1330Y 0.25 possibly_damaging(0.85) TCGA-06-5416-01 13 23915369 23915369 C A SACS Missense_Mutation p.K882N 0.34 benign(0.425) TCGA-06-5416-01 13 23929713 23929713 C T SACS Silent p.P346P 0.23 TCGA-06-5416-01 13 24468280 24468280 C T C1QTNF9B Missense_Mutation p.R76Q 0.62 tolerated(0.49) benign(0.007) TCGA-06-5416-01 13 24893016 24893016 G A C1QTNF9 Missense_Mutation p.R76Q 0.23 tolerated(0.18) benign(0.007) TCGA-06-5416-01 13 25064967 25064967 C T PARP4 Splice_Site p.X352_splice 0.24 TCGA-06-5416-01 13 25066672 25066672 C A PARP4 Missense_Mutation p.A314S 0.29 tolerated(0.6) benign(0.044) TCGA-06-5416-01 13 25067820 25067820 C T PARP4 Missense_Mutation p.D265N 0.30 tolerated(0.34) benign(0.016) TCGA-06-5416-01 13 25077900 25077900 G T PARP4 Silent p.I5I 0.48 TCGA-06-5416-01 13 25265293 25265293 G A ATP12A Missense_Mutation p.A331T 0.54 tolerated(0.1) benign(0.034) TCGA-06-5416-01 13 25266943 25266943 G T ATP12A Missense_Mutation p.S435I 0.23 tolerated(0.09) benign(0.123) TCGA-06-5416-01 13 25272876 25272876 G T ATP12A Missense_Mutation p.E537D 0.26 tolerated(1) benign(0.083) TCGA-06-5416-01 13 25367210 25367210 G T RNF17 Missense_Mutation p.Q322H 0.24 tolerated(0.2) probably_damaging(0.948) TCGA-06-5416-01 13 25428226 25428226 C T RNF17 Missense_Mutation p.A1185V 0.47 tolerated(0.06) probably_damaging(0.983) TCGA-06-5416-01 13 25480890 25480890 T A CENPJ Missense_Mutation p.K429I 0.25 deleterious(0.01) probably_damaging(0.973) TCGA-06-5416-01 13 25482242 25482242 C T CENPJ Silent p.E296E 0.47 TCGA-06-5416-01 13 25486953 25486953 C A CENPJ Nonsense_Mutation p.E71* 0.60 TCGA-06-5416-01 13 25671327 25671327 C T PABPC3 Missense_Mutation p.R331C 0.05 deleterious(0.01) benign(0.36) TCGA-06-5416-01 13 25901127 25901127 A C NUPL1 Missense_Mutation p.N369H 0.26 deleterious(0.02) possibly_damaging(0.712) TCGA-06-5416-01 13 26788658 26788658 C T RNF6 Missense_Mutation p.R454Q 0.28 tolerated(0.1) benign(0.029) TCGA-06-5416-01 13 26911760 26911760 C T CDK8 Missense_Mutation p.S62L 0.58 deleterious(0.01) probably_damaging(0.977) TCGA-06-5416-01 13 26978210 26978210 C T CDK8 Missense_Mutation p.R463W 0.24 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-06-5416-01 13 27664045 27664045 G A USP12 Missense_Mutation p.R237C 0.58 tolerated(0.39) benign(0.005) TCGA-06-5416-01 13 28014400 28014400 C A MTIF3 Missense_Mutation p.Q62H 0.27 tolerated(0.33) benign(0.035) TCGA-06-5416-01 13 28136863 28136863 G T LNX2 Missense_Mutation p.S304Y 0.51 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 13 28155592 28155592 G A LNX2 Silent p.F83F 0.16 TCGA-06-5416-01 13 28624339 28624339 G A FLT3 Missense_Mutation p.A212V 0.23 tolerated(0.21) benign(0.001) TCGA-06-5416-01 13 28854679 28854679 G A PAN3 Splice_Site p.X773_splice 0.26 TCGA-06-5416-01 13 28971110 28971110 G A FLT1 Silent p.S549S 0.55 TCGA-06-5416-01 13 29284972 29284972 G A SLC46A3 Missense_Mutation p.P357S 0.29 tolerated(0.11) benign(0.025) TCGA-06-5416-01 13 29855867 29855867 C T MTUS2 Missense_Mutation p.P901S 0.33 tolerated(0.12) possibly_damaging(0.536) TCGA-06-5416-01 13 30109957 30109957 G A SLC7A1 Silent p.I123I 0.23 TCGA-06-5416-01 13 30782631 30782631 G A KATNAL1 3'UTR 0.25 TCGA-06-5416-01 13 30829694 30829694 C A KATNAL1 Missense_Mutation p.A128S 0.31 tolerated(0.98) benign(0.001) TCGA-06-5416-01 13 31035292 31035292 G A HMGB1 3'UTR 0.24 TCGA-06-5416-01 13 31035626 31035626 T G HMGB1 Missense_Mutation p.K172N 0.25 deleterious(0.01) unknown(0) TCGA-06-5416-01 13 31035655 31035655 G A HMGB1 Nonsense_Mutation p.R163* 0.48 TCGA-06-5416-01 13 31037850 31037850 A G HMGB1 Intron 0.40 TCGA-06-5416-01 13 31205265 31205265 T G USPL1 Missense_Mutation p.I174M 0.23 tolerated(0.12) possibly_damaging(0.751) TCGA-06-5416-01 13 31231803 31231803 C A USPL1 Missense_Mutation p.S530Y 0.29 deleterious(0.01) possibly_damaging(0.767) TCGA-06-5416-01 13 31711230 31711230 T C HSPH1 3'UTR 0.26 TCGA-06-5416-01 13 31711477 31711477 G A HSPH1 Missense_Mutation p.S852F 0.24 deleterious(0.05) possibly_damaging(0.45) TCGA-06-5416-01 13 31722180 31722180 G A HSPH1 Missense_Mutation p.L432F 0.31 deleterious(0) possibly_damaging(0.895) TCGA-06-5416-01 13 32371486 32371486 C T RXFP2 Silent p.F645F 0.34 TCGA-06-5416-01 13 32709298 32709298 C A FRY Missense_Mutation p.S352Y 0.38 deleterious(0.01) possibly_damaging(0.797) TCGA-06-5416-01 13 32723884 32723884 G T FRY Splice_Site p.X465_splice 0.21 TCGA-06-5416-01 13 32792914 32792914 C T FRY Missense_Mutation p.R1571C 0.49 deleterious(0.01) possibly_damaging(0.556) TCGA-06-5416-01 13 32821572 32821572 G A FRY Missense_Mutation p.R2314Q 0.24 tolerated(0.33) possibly_damaging(0.656) TCGA-06-5416-01 13 32841395 32841395 G A FRY Missense_Mutation p.D2679N 0.20 tolerated(0.08) benign(0.013) TCGA-06-5416-01 13 32906408 32906408 G T BRCA2 Splice_Site p.X265_splice 0.50 TCGA-06-5416-01 13 32906551 32906551 T A BRCA2 Missense_Mutation p.F312L 0.27 tolerated(0.33) benign(0.097) TCGA-06-5416-01 13 32911647 32911647 C T BRCA2 Missense_Mutation p.A1052V 0.26 tolerated(0.26) benign(0.089) TCGA-06-5416-01 13 32912949 32912949 T C BRCA2 Missense_Mutation p.V1486A 0.33 tolerated(0.2) benign(0.017) TCGA-06-5416-01 13 32913877 32913877 A C BRCA2 Missense_Mutation p.K1795N 0.33 deleterious(0.04) benign(0.059) TCGA-06-5416-01 13 32945129 32945129 C T BRCA2 Missense_Mutation p.R2842C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 13 32981784 32981784 C A N4BP2L1 Missense_Mutation p.R102I 0.28 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 13 33018021 33018021 A C N4BP2L2 Missense_Mutation p.F218C 0.19 tolerated(0.23) benign(0.013) TCGA-06-5416-01 13 33590966 33590966 A G KL Missense_Mutation p.N130D 0.26 tolerated(0.3) possibly_damaging(0.618) TCGA-06-5416-01 13 33627938 33627938 C A KL Missense_Mutation p.S285Y 0.28 tolerated(0.06) benign(0.222) TCGA-06-5416-01 13 33635074 33635074 C T KL Missense_Mutation p.R620C 0.55 deleterious(0.02) benign(0.373) TCGA-06-5416-01 13 33635726 33635726 C T KL Missense_Mutation p.T837M 0.28 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 13 33679601 33679601 G A STARD13 3'UTR 0.57 TCGA-06-5416-01 13 33703195 33703195 G T STARD13 Missense_Mutation p.S540Y 0.50 deleterious(0) possibly_damaging(0.707) TCGA-06-5416-01 13 33703217 33703217 T C STARD13 Missense_Mutation p.T533A 0.29 tolerated(0.75) benign(0.011) TCGA-06-5416-01 13 33703667 33703667 G A STARD13 Missense_Mutation p.R383C 0.25 tolerated(0.2) possibly_damaging(0.556) TCGA-06-5416-01 13 35733510 35733510 G T NBEA Nonsense_Mutation p.E1068* 0.66 TCGA-06-5416-01 13 36180572 36180572 C T NBEA Missense_Mutation p.P2436S 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 13 36379876 36379876 C T DCLK1 Missense_Mutation p.R635Q 0.26 deleterious(0) benign(0.417) TCGA-06-5416-01 13 36402395 36402395 G A DCLK1 Nonsense_Mutation p.R427* 0.39 TCGA-06-5416-01 13 36686195 36686195 C A DCLK1 Missense_Mutation p.E178D 0.60 tolerated(0.11) unknown(0) TCGA-06-5416-01 13 37007310 37007310 G A CCNA1 Silent p.V83V 0.23 TCGA-06-5416-01 13 37014168 37014168 G A CCNA1 Missense_Mutation p.D316N 0.55 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 13 37269436 37269436 C T SERTM1 Missense_Mutation p.S74F 0.27 deleterious_low_confidence(0) benign(0.143) TCGA-06-5416-01 13 37422697 37422697 A G SMAD9 3'UTR 0.54 TCGA-06-5416-01 13 37453433 37453433 G A SMAD9 Missense_Mutation p.R132C 0.22 deleterious(0.01) benign(0.008) TCGA-06-5416-01 13 37453902 37453902 C T SMAD9 5'UTR 0.52 TCGA-06-5416-01 13 37569729 37569729 G A ALG5 Missense_Mutation p.S24F 0.57 tolerated(0.7) benign(0.194) TCGA-06-5416-01 13 37586376 37586376 A C SUPT20H Missense_Mutation p.V684G 0.10 deleterious(0.02) benign(0.063) TCGA-06-5416-01 13 37591402 37591402 G A SUPT20H Missense_Mutation p.P658S 0.25 tolerated(0.07) benign(0.006) TCGA-06-5416-01 13 37622073 37622073 A G SUPT20H Missense_Mutation p.Y14H 0.23 tolerated(0.17) benign(0.099) TCGA-06-5416-01 13 38144737 38144737 C T POSTN Missense_Mutation p.R750Q 0.58 tolerated_low_confidence(0.09) benign(0.319) TCGA-06-5416-01 13 38266164 38266164 G A TRPC4 Silent p.V402V 0.58 TCGA-06-5416-01 13 38320332 38320332 G A TRPC4 Silent p.S213S 0.53 TCGA-06-5416-01 13 38320337 38320337 A G TRPC4 Missense_Mutation p.S212P 0.28 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 13 39263830 39263830 A C FREM2 Missense_Mutation p.K783N 0.24 deleterious(0) possibly_damaging(0.766) TCGA-06-5416-01 13 39264766 39264766 C T FREM2 Silent p.V1095V 0.27 TCGA-06-5416-01 13 39266155 39266155 C T FREM2 Silent p.V1558V 0.36 TCGA-06-5416-01 13 39424334 39424334 G A FREM2 Missense_Mutation p.R2180H 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 13 39433655 39433655 C T FREM2 Missense_Mutation p.R2483C 0.29 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 13 39540853 39540853 A G STOML3 3'UTR 0.40 TCGA-06-5416-01 13 39540920 39540920 G T STOML3 3'UTR 0.25 TCGA-06-5416-01 13 39608283 39608283 G A PROSER1 Silent p.Y32Y 0.18 TCGA-06-5416-01 13 40251617 40251617 G T COG6 Missense_Mutation p.E147D 0.50 tolerated(0.42) benign(0.078) TCGA-06-5416-01 13 41134955 41134955 G A FOXO1 Missense_Mutation p.R225C 0.30 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 13 41704715 41704715 C T KBTBD6 Missense_Mutation p.D645N 0.32 tolerated_low_confidence(0.12) benign(0.033) TCGA-06-5416-01 13 41766180 41766180 G A KBTBD7 3'UTR 0.50 TCGA-06-5416-01 13 41834743 41834743 C A MTRF1 Nonsense_Mutation p.E101* 0.61 TCGA-06-5416-01 13 41834804 41834804 C T MTRF1 Silent p.E80E 0.23 TCGA-06-5416-01 13 42142403 42142403 G A VWA8 Missense_Mutation p.A1883V 0.28 tolerated(0.21) benign(0.192) TCGA-06-5416-01 13 42273312 42273312 A C VWA8 Missense_Mutation p.F1153L 0.24 tolerated(1) benign(0) TCGA-06-5416-01 13 42385451 42385451 G T VWA8 Missense_Mutation p.S658Y 0.49 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 13 42875618 42875618 G T AKAP11 Missense_Mutation p.K912N 0.28 tolerated(0.49) benign(0.008) TCGA-06-5416-01 13 42877838 42877838 G T AKAP11 Missense_Mutation p.E1652D 0.20 tolerated(0.28) benign(0.268) TCGA-06-5416-01 13 43180837 43180837 G T TNFSF11 Missense_Mutation p.S246I 0.29 deleterious(0.01) probably_damaging(0.953) TCGA-06-5416-01 13 43500558 43500558 C T EPSTI1 Missense_Mutation p.A191T 0.28 tolerated(0.27) benign(0.036) TCGA-06-5416-01 13 43659925 43659925 G T DNAJC15 Missense_Mutation p.K111N 0.22 deleterious(0) benign(0.033) TCGA-06-5416-01 13 43788017 43788017 C T ENOX1 3'UTR 0.32 TCGA-06-5416-01 13 44434176 44434176 C T CCDC122 Missense_Mutation p.A63T 0.48 tolerated(0.54) possibly_damaging(0.57) TCGA-06-5416-01 13 45010690 45010690 G T TSC22D1 Intron 0.29 TCGA-06-5416-01 13 45914386 45914386 T C TPT1 Intron 0.26 TCGA-06-5416-01 13 45975258 45975258 G T SLC25A30 Missense_Mutation p.L192I 0.23 tolerated(0.2) benign(0.142) TCGA-06-5416-01 13 46276909 46276909 G A SPERT Splice_Site p.X26_splice 0.49 TCGA-06-5416-01 13 46287561 46287561 G A SPERT Missense_Mutation p.R134H 0.63 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 46288428 46288428 G A SPERT Missense_Mutation p.R423H 0.46 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 13 46559615 46559615 G A ZC3H13 Nonsense_Mutation p.R513* 0.24 TCGA-06-5416-01 13 46619599 46619599 G A ZC3H13 Missense_Mutation p.T15I 0.32 unknown(0) TCGA-06-5416-01 13 46679080 46679080 G A CPB2 Missense_Mutation p.A22V 0.18 tolerated(0.13) benign(0.022) TCGA-06-5416-01 13 46721205 46721205 G T LCP1 Missense_Mutation p.L338M 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 46725213 46725213 G T LCP1 Missense_Mutation p.A247D 0.34 tolerated(0.09) benign(0.001) TCGA-06-5416-01 13 46728964 46728965 - T LCP1 Frame_Shift_Ins p.K184Efs*31 0.28 TCGA-06-5416-01 13 47279213 47279213 G T LRCH1 Missense_Mutation p.D471Y 0.28 deleterious(0) possibly_damaging(0.851) TCGA-06-5416-01 13 47308084 47308084 G A LRCH1 Missense_Mutation p.R679K 0.55 deleterious(0.03) probably_damaging(0.997) TCGA-06-5416-01 13 48571096 48571096 C T SUCLA2 Silent p.R51R 0.25 TCGA-06-5416-01 13 48660424 48660424 T G MED4 Missense_Mutation p.Q119H 0.29 tolerated(0.6) benign(0.002) TCGA-06-5416-01 13 48921999 48921999 C T RB1 Missense_Mutation p.S180L 0.61 tolerated(0.31) benign(0.003) TCGA-06-5416-01 13 49705294 49705294 C T FNDC3A Nonsense_Mutation p.R92* 0.31 TCGA-06-5416-01 13 49705408 49705408 C T FNDC3A Missense_Mutation p.P130S 0.52 tolerated(0.23) possibly_damaging(0.616) TCGA-06-5416-01 13 49854671 49854671 G T CDADC1 Missense_Mutation p.R416I 0.24 tolerated(0.11) benign(0.255) TCGA-06-5416-01 13 49865989 49865989 G T CDADC1 3'UTR 0.30 TCGA-06-5416-01 13 50035238 50035238 A G SETDB2 Missense_Mutation p.I50V 0.28 tolerated(0.87) benign(0.011) TCGA-06-5416-01 13 50050907 50050907 G T SETDB2 Nonsense_Mutation p.E213* 0.29 TCGA-06-5416-01 13 50055118 50055118 G A SETDB2 Missense_Mutation p.R353Q 0.34 deleterious(0.01) probably_damaging(0.934) TCGA-06-5416-01 13 50066119 50066119 T G SETDB2 3'UTR 0.58 TCGA-06-5416-01 13 50140846 50140846 G T RCBTB1 Missense_Mutation p.T62K 0.59 deleterious(0.03) possibly_damaging(0.772) TCGA-06-5416-01 13 51826234 51826234 G A FAM124A Missense_Mutation p.R280K 0.53 tolerated(1) benign(0.002) TCGA-06-5416-01 13 51943084 51943084 G A INTS6 Missense_Mutation p.P823S 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-06-5416-01 13 51943441 51943441 C A INTS6 Nonsense_Mutation p.E704* 0.26 TCGA-06-5416-01 13 52333949 52333949 G A WDFY2 3'UTR 0.28 TCGA-06-5416-01 13 52334044 52334044 A G WDFY2 3'UTR 0.33 TCGA-06-5416-01 13 52373672 52373672 C T DHRS12 Missense_Mutation p.R63Q 0.28 deleterious(0.01) benign(0.074) TCGA-06-5416-01 13 52373688 52373688 G T DHRS12 Missense_Mutation p.L58I 0.21 tolerated(0.41) benign(0.001) TCGA-06-5416-01 13 52548287 52548287 T C ATP7B Missense_Mutation p.T357A 0.19 tolerated(0.82) benign(0.001) TCGA-06-5416-01 13 52548527 52548527 C A ATP7B Nonsense_Mutation p.E277* 0.18 TCGA-06-5416-01 13 52604666 52604666 C T UTP14C Missense_Mutation p.P576S 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 13 52686440 52686440 G A NEK5 Silent p.I92I 0.23 TCGA-06-5416-01 13 52719007 52719007 T G NEK3 Missense_Mutation p.K208T 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 13 52864119 52864119 C A RP11-248G5.8 Splice_Site 0.25 TCGA-06-5416-01 13 52989790 52989790 C T VPS36 3'UTR 0.42 TCGA-06-5416-01 13 53035838 53035838 A C CKAP2 Missense_Mutation p.K294Q 0.32 tolerated(0.07) probably_damaging(0.975) TCGA-06-5416-01 13 53049110 53049110 G A CKAP2 Missense_Mutation p.R629Q 0.27 tolerated(0.42) benign(0.008) TCGA-06-5416-01 13 53217583 53217583 G T HNRNPA1L2 Missense_Mutation p.R319I 0.62 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 13 53603005 53603005 C A OLFM4 Missense_Mutation p.L12M 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-06-5416-01 13 58207577 58207577 G T PCDH17 Missense_Mutation p.K299N 0.35 tolerated(0.15) benign(0.014) TCGA-06-5416-01 13 60584790 60584790 C A DIAPH3 Missense_Mutation p.R262I 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 13 61034668 61034668 A C TDRD3 Missense_Mutation p.K116T 0.29 tolerated(0.1) benign(0.071) TCGA-06-5416-01 13 61102986 61102986 C T TDRD3 Missense_Mutation p.P543S 0.50 tolerated_low_confidence(0.27) benign(0.002) TCGA-06-5416-01 13 61103095 61103095 G A TDRD3 Missense_Mutation p.R579Q 0.26 tolerated(0.32) benign(0.013) TCGA-06-5416-01 13 61985410 61985410 C T PCDH20 Missense_Mutation p.R941Q 0.39 deleterious_low_confidence(0.01) benign(0.122) TCGA-06-5416-01 13 61986344 61986344 A C PCDH20 Missense_Mutation p.L630V 0.30 deleterious(0.01) probably_damaging(0.977) TCGA-06-5416-01 13 61986356 61986356 C T PCDH20 Missense_Mutation p.A626T 0.26 tolerated(0.86) benign(0.004) TCGA-06-5416-01 13 61986420 61986420 C A PCDH20 Missense_Mutation p.K604N 0.25 tolerated(0.1) benign(0.375) TCGA-06-5416-01 13 61987072 61987072 C T PCDH20 Missense_Mutation p.G387E 0.26 deleterious(0.01) benign(0.004) TCGA-06-5416-01 13 70314539 70314539 C A KLHL1 Missense_Mutation p.A597S 0.33 deleterious(0.05) benign(0.035) TCGA-06-5416-01 13 72014706 72014706 A T DACH1 3'UTR 0.22 TCGA-06-5416-01 13 72440066 72440066 C T DACH1 Missense_Mutation p.C281Y 0.26 benign(0.328) TCGA-06-5416-01 13 73319293 73319293 C T BORA Missense_Mutation p.S229L 0.27 deleterious(0) probably_damaging(0.946) TCGA-06-5416-01 13 73369548 73369548 G T PIBF1 Missense_Mutation p.Q135H 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 13 73590105 73590105 C T PIBF1 3'UTR 0.40 TCGA-06-5416-01 13 75860861 75860861 G A TBC1D4 3'UTR 0.56 TCGA-06-5416-01 13 75861109 75861109 G A TBC1D4 Missense_Mutation p.T1239M 0.20 deleterious(0) possibly_damaging(0.677) TCGA-06-5416-01 13 77459450 77459450 C T KCTD12 Silent p.E278E 0.60 TCGA-06-5416-01 13 77570236 77570236 C A CLN5 Missense_Mutation p.T229K 0.28 deleterious(0) probably_damaging(0.911) TCGA-06-5416-01 13 77574808 77574808 C T CLN5 Missense_Mutation p.L310F 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 77629851 77629851 G A MYCBP2 Missense_Mutation p.L4459F 0.10 probably_damaging(0.99) TCGA-06-5416-01 13 77632501 77632501 C T MYCBP2 Missense_Mutation p.G4356D 0.50 probably_damaging(0.997) TCGA-06-5416-01 13 77724869 77724869 C A MYCBP2 Missense_Mutation p.K2339N 0.19 probably_damaging(0.918) TCGA-06-5416-01 13 77725049 77725049 T G MYCBP2 Missense_Mutation p.K2279N 0.26 possibly_damaging(0.889) TCGA-06-5416-01 13 77755899 77755899 C A MYCBP2 Missense_Mutation p.E1588D 0.27 possibly_damaging(0.715) TCGA-06-5416-01 13 77764452 77764452 C T MYCBP2 Silent p.K1325K 0.26 TCGA-06-5416-01 13 79175565 79175565 G T POU4F1 Missense_Mutation p.F415L 0.54 deleterious(0) unknown(0) TCGA-06-5416-01 13 79189832 79189832 A T RNF219 Silent p.S688S 0.27 TCGA-06-5416-01 13 79915284 79915284 T G RBM26 Silent p.R809R 0.21 TCGA-06-5416-01 13 80910884 80910884 T C SPRY2 3'UTR 0.21 TCGA-06-5416-01 13 80911109 80911109 G T SPRY2 Nonsense_Mutation p.C244* 0.47 TCGA-06-5416-01 13 80911716 80911716 G T SPRY2 Missense_Mutation p.S42Y 0.23 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 13 88327784 88327784 C A SLITRK5 Silent p.I47I 0.23 TCGA-06-5416-01 13 92003374 92003374 G A MIR17HG RNA 0.58 TCGA-06-5416-01 13 92101073 92101073 G T GPC5 Missense_Mutation p.E74D 0.56 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 95112383 95112383 C T DCT Missense_Mutation p.A381T 0.45 deleterious(0.02) benign(0.168) TCGA-06-5416-01 13 95243122 95243122 C T TGDS Missense_Mutation p.A100T 0.11 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 13 95278222 95278222 C T GPR180 Silent p.G363G 0.26 TCGA-06-5416-01 13 95695934 95695934 A G ABCC4 Splice_Site p.X1245_splice 0.63 TCGA-06-5416-01 13 96238340 96238340 G A DZIP1 Missense_Mutation p.R757C 0.23 deleterious(0) possibly_damaging(0.517) TCGA-06-5416-01 13 96251663 96251663 G A DZIP1 Missense_Mutation p.S498L 0.24 tolerated(0.43) benign(0.013) TCGA-06-5416-01 13 96409897 96409897 G A DNAJC3 Splice_Site p.X132_splice 0.28 TCGA-06-5416-01 13 96438307 96438307 A C DNAJC3 Missense_Mutation p.K397T 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 13 96439296 96439296 G A DNAJC3 Missense_Mutation p.R415Q 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 96454019 96454019 G A UGGT2 3'UTR 0.54 TCGA-06-5416-01 13 96515882 96515882 C A UGGT2 Splice_Site p.X1215_splice 0.22 TCGA-06-5416-01 13 97639275 97639275 G A OXGR1 Missense_Mutation p.L247F 0.61 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 13 97995278 97995278 C A MBNL2 Missense_Mutation p.F116L 0.30 tolerated(0.21) benign(0.069) TCGA-06-5416-01 13 97999161 97999161 T G MBNL2 Missense_Mutation p.V215G 0.20 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 13 98116873 98116873 G A RAP2A 3'UTR 0.21 TCGA-06-5416-01 13 98652825 98652825 G A IPO5 Missense_Mutation p.R363Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 13 98666411 98666411 C A IPO5 Silent p.A774A 0.58 TCGA-06-5416-01 13 98670756 98670756 G T IPO5 Missense_Mutation p.W896C 0.25 deleterious(0.01) possibly_damaging(0.905) TCGA-06-5416-01 13 98829193 98829193 C T RNF113B Missense_Mutation p.A100T 0.33 tolerated(0.08) benign(0.271) TCGA-06-5416-01 13 98865534 98865534 G A FARP1 Missense_Mutation p.R13Q 0.58 deleterious(0) probably_damaging(0.924) TCGA-06-5416-01 13 99114092 99114092 C T STK24 Missense_Mutation p.R342Q 0.59 deleterious(0.02) benign(0.135) TCGA-06-5416-01 13 99339880 99339880 G A SLC15A1 Silent p.G594G 0.32 TCGA-06-5416-01 13 99532201 99532201 A G DOCK9 Missense_Mutation p.V965A 0.27 tolerated(0.44) benign(0.003) TCGA-06-5416-01 13 99554734 99554734 G T DOCK9 Missense_Mutation p.F396L 0.21 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 13 99907925 99907925 C A GPR18 Missense_Mutation p.D68Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 100402649 100402649 C T EML1 Silent p.S710S 0.71 TCGA-06-5416-01 14 100743924 100743924 A C YY1 Missense_Mutation p.K411T 0.39 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 14 100847991 100847991 G T WDR25 Missense_Mutation p.G244C 0.75 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 14 101510585 101510585 G A MIR1185-2 RNA 0.28 TCGA-06-5416-01 14 102028196 102028196 G T DIO3 Missense_Mutation p.Q121H 0.30 tolerated(0.61) benign(0.015) TCGA-06-5416-01 14 102391659 102391659 C T PPP2R5C 3'UTR 0.42 TCGA-06-5416-01 14 102446879 102446879 C A DYNC1H1 Missense_Mutation p.T318N 0.14 benign(0.111) TCGA-06-5416-01 14 102452133 102452133 A G DYNC1H1 Missense_Mutation p.N524S 0.83 benign(0.101) TCGA-06-5416-01 14 102452788 102452788 G T DYNC1H1 Missense_Mutation p.E742D 0.33 benign(0.02) TCGA-06-5416-01 14 102470973 102470973 G A DYNC1H1 Missense_Mutation p.E1668K 0.08 benign(0.26) TCGA-06-5416-01 14 102483192 102483192 C T DYNC1H1 Silent p.V2568V 0.41 TCGA-06-5416-01 14 102505803 102505803 G A DYNC1H1 Missense_Mutation p.V3839I 0.10 benign(0.185) TCGA-06-5416-01 14 102514948 102514948 C T DYNC1H1 Silent p.C4438C 0.64 TCGA-06-5416-01 14 102516520 102516520 G T DYNC1H1 Missense_Mutation p.E4599D 0.11 benign(0.004) TCGA-06-5416-01 14 102516832 102516832 G A DYNC1H1 Missense_Mutation p.E4625K 0.09 benign(0.009) TCGA-06-5416-01 14 102808600 102808600 C T ZNF839 3'UTR 0.82 TCGA-06-5416-01 14 103369722 103369722 T C TRAF3 Missense_Mutation p.L364P 0.41 deleterious(0) possibly_damaging(0.894) TCGA-06-5416-01 14 103390154 103390154 C T AMN Silent p.F50F 0.44 TCGA-06-5416-01 14 103573763 103573763 G A EXOC3L4 Silent p.P528P 0.23 TCGA-06-5416-01 14 103805126 103805126 C T EIF5 Missense_Mutation p.R214C 0.08 tolerated(0.06) possibly_damaging(0.776) TCGA-06-5416-01 14 104026527 104026527 G A BAG5 Silent p.N366N 0.75 TCGA-06-5416-01 14 104129155 104129155 G A KLC1 Missense_Mutation p.E230K 0.33 deleterious(0.02) possibly_damaging(0.584) TCGA-06-5416-01 14 104206624 104206624 G A PPP1R13B Missense_Mutation p.S710F 0.08 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 104460709 104460709 C T TDRD9 Silent p.S407S 0.33 TCGA-06-5416-01 14 105179331 105179331 T C INF2 Splice_Site p.X925_splice 0.27 TCGA-06-5416-01 14 105179862 105179862 C T INF2 Missense_Mutation p.R987W 0.42 deleterious(0.01) unknown(0) TCGA-06-5416-01 14 105206110 105206110 G A ADSSL1 Missense_Mutation p.D188N 0.77 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 14 105395198 105395198 G A PLD4 Missense_Mutation p.V133I 0.70 tolerated(0.42) benign(0.021) TCGA-06-5416-01 14 105406075 105406075 G T AHNAK2 Missense_Mutation p.S5238Y 0.36 possibly_damaging(0.736) TCGA-06-5416-01 14 105408676 105408676 A G AHNAK2 Missense_Mutation p.V4371A 0.74 benign(0.054) TCGA-06-5416-01 14 105410241 105410241 A G AHNAK2 Silent p.T3849T 0.79 TCGA-06-5416-01 14 105412083 105412083 C A AHNAK2 Missense_Mutation p.K3235N 0.22 probably_damaging(0.943) TCGA-06-5416-01 14 105412578 105412578 C A AHNAK2 Missense_Mutation p.K3070N 0.22 probably_damaging(0.978) TCGA-06-5416-01 14 105414925 105414925 A G AHNAK2 Missense_Mutation p.V2288A 0.79 benign(0.006) TCGA-06-5416-01 14 105415952 105415952 C T AHNAK2 Missense_Mutation p.D1946N 0.39 benign(0.11) TCGA-06-5416-01 14 105457951 105457951 G A C14orf79 Silent p.A231A 0.36 TCGA-06-5416-01 14 105518245 105518245 G T GPR132 Missense_Mutation p.L77M 0.83 deleterious(0.03) probably_damaging(0.995) TCGA-06-5416-01 14 105611364 105611364 C T JAG2 Missense_Mutation p.R996H 0.31 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 14 105716298 105716298 C T BTBD6 Silent p.F249F 0.10 TCGA-06-5416-01 14 105752655 105752655 C T BRF1 Silent p.S81S 0.67 TCGA-06-5416-01 14 105846097 105846097 G A PACS2 Silent p.S327S 0.30 TCGA-06-5416-01 14 105848858 105848858 C A PACS2 Silent p.I486I 0.78 TCGA-06-5416-01 14 105849146 105849146 C A PACS2 Missense_Mutation p.F507L 0.31 tolerated(0.24) benign(0.002) TCGA-06-5416-01 14 105859590 105859590 G T PACS2 Missense_Mutation p.K838N 0.61 deleterious(0) possibly_damaging(0.839) TCGA-06-5416-01 14 105911827 105911827 G A MTA1 Missense_Mutation p.A57T 0.32 tolerated(0.78) benign(0.026) TCGA-06-5416-01 14 105936515 105936515 C T MTA1 Missense_Mutation p.A704V 0.83 tolerated(0.36) benign(0.017) TCGA-06-5416-01 14 106090985 106090985 T C IGHG4 Missense_Mutation p.Y271C 0.04 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 14 106091026 106091026 G A IGHG4 Silent p.I257I 0.18 TCGA-06-5416-01 14 106235787 106235787 G A IGHG3 Silent p.I307I 0.31 TCGA-06-5416-01 14 106236665 106236665 G T IGHG3 Missense_Mutation p.S134Y 0.05 deleterious(0.01) benign(0.02) TCGA-06-5416-01 14 106237631 106237631 G A IGHG3 Missense_Mutation p.T38M 0.78 deleterious(0.03) probably_damaging(0.988) TCGA-06-5416-01 14 106405720 106405720 A G IGHV6-1 Missense_Mutation p.V85A 0.33 deleterious(0.04) benign(0) TCGA-06-5416-01 14 106494324 106494324 G A IGHV2-5 Silent p.G56G 0.47 TCGA-06-5416-01 14 106539289 106539289 G T IGHV1-8 Silent p.T47T 0.37 TCGA-06-5416-01 14 106539478 106539478 G A IGHV1-8 Missense_Mutation p.A13V 0.07 tolerated(0.67) benign(0.019) TCGA-06-5416-01 14 106621989 106621989 G A IGHV3-16 Nonsense_Mutation p.R86* 0.78 TCGA-06-5416-01 14 106926268 106926268 C A IGHV3-43 Missense_Mutation p.D92Y 0.36 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-06-5416-01 14 106993867 106993867 G T IGHV3-48 Missense_Mutation p.L100M 0.10 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-06-5416-01 14 107013392 107013392 C T IGHV3-49 Silent p.E2E 0.08 TCGA-06-5416-01 14 107048789 107048789 G A IGHV3-53 Silent p.Y77Y 0.33 TCGA-06-5416-01 14 107078487 107078487 G A IGHV1-58 Silent p.Y79Y 0.43 TCGA-06-5416-01 14 107083259 107083259 C T IGHV4-59 Silent p.A115A 0.12 TCGA-06-5416-01 14 107113898 107113898 T A IGHV3-64 Missense_Mutation p.E66V 0.36 deleterious_low_confidence(0.02) benign(0.414) TCGA-06-5416-01 14 107179131 107179131 C A IGHV2-70 Splice_Site p.X16_splice 0.42 TCGA-06-5416-01 14 107211119 107211119 C T IGHV3-73 Missense_Mutation p.R57H 0.35 deleterious_low_confidence(0.04) benign(0.142) TCGA-06-5416-01 14 19566060 19566060 C T POTEG Silent p.V368V 0.09 TCGA-06-5416-01 14 19566069 19566069 A G POTEG Silent p.E371E 0.11 TCGA-06-5416-01 14 20248837 20248837 C T OR4M1 Missense_Mutation p.A119V 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 20296241 20296241 C A OR4N2 Missense_Mutation p.L212M 0.58 deleterious(0) probably_damaging(0.925) TCGA-06-5416-01 14 20389307 20389307 T G OR4K5 Missense_Mutation p.L181R 0.08 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 20403903 20403904 - T OR4K1 Frame_Shift_Ins p.A29Cfs*24 0.27 TCGA-06-5416-01 14 20404575 20404575 C T OR4K1 Silent p.F250F 0.31 TCGA-06-5416-01 14 20444383 20444383 C T OR4K15 Missense_Mutation p.L236F 0.29 tolerated(0.27) benign(0.013) TCGA-06-5416-01 14 20444613 20444613 G A OR4K15 Silent p.T312T 0.20 TCGA-06-5416-01 14 20502395 20502395 C A OR4K13 Missense_Mutation p.D175Y 0.54 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 14 20528367 20528367 T G OR4L1 Missense_Mutation p.L55R 0.29 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 14 20528853 20528853 C A OR4L1 Missense_Mutation p.S217Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 14 20528989 20528989 C T OR4L1 Silent p.F262F 0.27 TCGA-06-5416-01 14 20585760 20585760 C T OR4K17 Silent p.I65I 0.25 TCGA-06-5416-01 14 20611991 20611991 A T OR4N5 Missense_Mutation p.I33F 0.30 tolerated(0.44) benign(0.002) TCGA-06-5416-01 14 20612279 20612279 C T OR4N5 Missense_Mutation p.P129S 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 20666329 20666329 T G OR11G2 Missense_Mutation p.C279G 0.57 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 14 20825941 20825941 C T PARP2 Silent p.F579F 0.22 TCGA-06-5416-01 14 20859825 20859825 C T TEP1 Missense_Mutation p.R677H 0.30 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 14 20869162 20869162 C T TEP1 Silent p.S510S 0.25 TCGA-06-5416-01 14 20876616 20876616 T G TEP1 5'UTR 0.37 TCGA-06-5416-01 14 20979036 20979036 G A RNASE10 Missense_Mutation p.A136T 0.21 tolerated(0.61) benign(0.001) TCGA-06-5416-01 14 21109142 21109142 G A OR6S1 Missense_Mutation p.R237C 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 14 21360162 21360162 C T RNASE3 Missense_Mutation p.P106L 0.27 tolerated(0.07) possibly_damaging(0.598) TCGA-06-5416-01 14 21458138 21458138 C A METTL17 5'Flank 0.29 TCGA-06-5416-01 14 21469697 21469697 G A SLC39A2 Missense_Mutation p.A297T 0.27 tolerated(0.23) benign(0.081) TCGA-06-5416-01 14 21502299 21502299 C A RNASE13 Missense_Mutation p.G50V 0.53 deleterious(0.02) probably_damaging(0.995) TCGA-06-5416-01 14 21502303 21502303 G A RNASE13 Missense_Mutation p.R49W 0.54 deleterious(0.01) possibly_damaging(0.663) TCGA-06-5416-01 14 21541311 21541311 G T ARHGEF40 Missense_Mutation p.E37D 0.35 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 14 21541316 21541316 C T ARHGEF40 Missense_Mutation p.T39I 0.16 deleterious(0.01) probably_damaging(0.986) TCGA-06-5416-01 14 21560093 21560093 G A ZNF219 Missense_Mutation p.R455C 0.65 deleterious(0.03) benign(0.425) TCGA-06-5416-01 14 21623319 21623319 A C OR5AU1 Missense_Mutation p.F289C 0.49 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 14 21775892 21775892 C A RPGRIP1 Missense_Mutation p.A268D 0.29 tolerated(0.07) benign(0.037) TCGA-06-5416-01 14 21778749 21778749 G A RPGRIP1 Missense_Mutation p.E305K 0.56 deleterious(0.03) benign(0.022) TCGA-06-5416-01 14 21794056 21794056 C T RPGRIP1 Missense_Mutation p.R812W 0.33 deleterious(0) probably_damaging(0.964) TCGA-06-5416-01 14 21820815 21820815 G T SUPT16H 3'UTR 0.23 TCGA-06-5416-01 14 21854184 21854184 T C CHD8 Missense_Mutation p.N2445S 0.47 tolerated_low_confidence(0.51) benign(0) TCGA-06-5416-01 14 21860069 21860069 A G CHD8 Silent p.L2270L 0.41 TCGA-06-5416-01 14 21869590 21869590 T C CHD8 Missense_Mutation p.D1382G 0.32 deleterious(0.03) probably_damaging(0.989) TCGA-06-5416-01 14 21955690 21955690 C T TOX4 Silent p.V52V 0.26 TCGA-06-5416-01 14 21961216 21961216 C T TOX4 Nonsense_Mutation p.R481* 0.54 TCGA-06-5416-01 14 22133915 22133915 T C OR4E2 Missense_Mutation p.S207P 0.28 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 14 22192458 22192458 G A TRAV3 Missense_Mutation p.G78D 0.59 deleterious(0.01) benign(0.117) TCGA-06-5416-01 14 22204506 22204506 G A TRAV4 Silent p.R2R 0.23 TCGA-06-5416-01 14 22309797 22309797 G T TRAV12-1 Missense_Mutation p.D60Y 0.20 tolerated(1) benign(0.01) TCGA-06-5416-01 14 22392759 22392759 C A TRAV14DV4 Silent p.S94S 0.33 TCGA-06-5416-01 14 22447084 22447084 C A TRAV8-6 Missense_Mutation p.S22Y 0.26 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 14 22631753 22631753 C T TRAV29DV5 Silent p.F115F 0.66 TCGA-06-5416-01 14 22783286 22783286 C T TRAV40 Silent p.N84N 0.56 TCGA-06-5416-01 14 23016507 23016507 C T TRAC Missense_Mutation p.S21F 0.29 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 14 23235897 23235897 C A OXA1L Missense_Mutation p.P56H 0.30 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-06-5416-01 14 23310791 23310791 C T MMP14 Missense_Mutation p.A67V 0.13 tolerated(0.08) probably_damaging(0.924) TCGA-06-5416-01 14 23311716 23311716 C T MMP14 Missense_Mutation p.R160C 0.37 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 14 23451477 23451477 C T AJUBA 5'UTR 0.25 TCGA-06-5416-01 14 23465378 23465378 G A C14orf93 Missense_Mutation p.R233W 0.30 deleterious_low_confidence(0.04) benign(0.001) TCGA-06-5416-01 14 23511721 23511721 G A PSMB11 Missense_Mutation p.G96D 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 23512016 23512016 C T PSMB11 Silent p.Y194Y 0.29 TCGA-06-5416-01 14 23549924 23549924 C T ACIN1 Missense_Mutation p.R265Q 0.27 benign(0.01) TCGA-06-5416-01 14 23559190 23559190 C T ACIN1 Splice_Site p.X204_splice 0.24 TCGA-06-5416-01 14 23564289 23564289 C T ACIN1 Silent p.G69G 0.18 TCGA-06-5416-01 14 23586760 23586760 C T CEBPE Missense_Mutation p.R261H 0.26 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 14 23586887 23586887 G A CEBPE Missense_Mutation p.R219C 0.68 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 14 23608689 23608689 C T SLC7A8 Missense_Mutation p.A286T 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 23635578 23635578 G A SLC7A8 Missense_Mutation p.S108F 0.28 deleterious(0) probably_damaging(0.966) TCGA-06-5416-01 14 23793655 23793655 C T PABPN1 Intron 0.35 TCGA-06-5416-01 14 23817865 23817865 T C SLC22A17 Missense_Mutation p.D181G 0.26 tolerated(0.13) possibly_damaging(0.516) TCGA-06-5416-01 14 23848720 23848720 G A CMTM5 3'UTR 0.19 TCGA-06-5416-01 14 23855198 23855198 C A MYH6 Missense_Mutation p.R1701L 0.58 deleterious(0) possibly_damaging(0.877) TCGA-06-5416-01 14 23858078 23858078 C T MYH6 Missense_Mutation p.E1389K 0.60 deleterious(0.02) possibly_damaging(0.907) TCGA-06-5416-01 14 23858216 23858216 C T MYH6 Missense_Mutation p.D1343N 0.33 deleterious(0.01) probably_damaging(0.929) TCGA-06-5416-01 14 23872928 23872928 C T MYH6 Silent p.E265E 0.14 TCGA-06-5416-01 14 23883284 23883284 G A MYH7 Missense_Mutation p.R1863W 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 23902386 23902386 G A MYH7 Silent p.F84F 0.28 TCGA-06-5416-01 14 23902931 23902931 G A MYH7 Missense_Mutation p.S4L 0.29 deleterious_low_confidence(0.04) benign(0.017) TCGA-06-5416-01 14 24026426 24026426 G A THTPA Missense_Mutation p.A154T 0.65 tolerated(0.22) benign(0.153) TCGA-06-5416-01 14 24114394 24114394 T C DHRS2 Silent p.C262C 0.28 TCGA-06-5416-01 14 24522962 24522962 C T LRRC16B Missense_Mutation p.H29Y 0.55 tolerated(0.11) benign(0.125) TCGA-06-5416-01 14 24584786 24584786 G T DCAF11 5'UTR 0.29 TCGA-06-5416-01 14 24588368 24588368 G A DCAF11 Missense_Mutation p.R265H 0.31 tolerated(0.07) benign(0.017) TCGA-06-5416-01 14 24608074 24608074 T G PSME1 3'UTR 0.19 TCGA-06-5416-01 14 24608778 24608778 G T EMC9 Missense_Mutation p.F107L 0.50 tolerated(0.65) benign(0.003) TCGA-06-5416-01 14 24641749 24641749 G T REC8 5'UTR 0.55 TCGA-06-5416-01 14 24642535 24642535 T C REC8 Missense_Mutation p.M126T 0.28 deleterious(0.03) benign(0.31) TCGA-06-5416-01 14 24656350 24656350 C T IPO4 Missense_Mutation p.A199T 0.57 tolerated(0.42) benign(0.007) TCGA-06-5416-01 14 24658927 24658927 G A TM9SF1 Silent p.F505F 0.32 TCGA-06-5416-01 14 24677179 24677179 C A TSSK4 Missense_Mutation p.L282I 0.23 tolerated(0.26) benign(0.03) TCGA-06-5416-01 14 24680763 24680763 C T CHMP4A Missense_Mutation p.E116K 0.30 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 14 24706763 24706763 C T GMPR2 Missense_Mutation p.A249V 0.35 deleterious(0) benign(0.222) TCGA-06-5416-01 14 24709889 24709889 C T TINF2 Missense_Mutation p.R266Q 0.27 deleterious_low_confidence(0) benign(0.417) TCGA-06-5416-01 14 24727594 24727594 C T TGM1 Nonsense_Mutation p.W433* 0.34 TCGA-06-5416-01 14 24728931 24728931 G A TGM1 Silent p.V321V 0.16 TCGA-06-5416-01 14 24780853 24780853 G A LTB4R2 Missense_Mutation p.R328Q 0.59 tolerated(0.06) probably_damaging(0.978) TCGA-06-5416-01 14 24787589 24787589 C A ADCY4 3'UTR 0.20 TCGA-06-5416-01 14 24808395 24808395 G A RIPK3 Silent p.N99N 0.63 TCGA-06-5416-01 14 24839201 24839201 G T NFATC4 Missense_Mutation p.E262D 0.32 tolerated(0.52) benign(0.325) TCGA-06-5416-01 14 24843473 24843473 G T NFATC4 Intron 0.30 TCGA-06-5416-01 14 24877189 24877189 A T NYNRIN Missense_Mutation p.S105C 0.08 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-06-5416-01 14 24878984 24878984 G T NYNRIN Missense_Mutation p.A662S 0.28 deleterious_low_confidence(0.02) benign(0.036) TCGA-06-5416-01 14 24885656 24885656 T C NYNRIN Silent p.R1567R 0.42 TCGA-06-5416-01 14 24886400 24886400 G A NYNRIN Silent p.R1815R 0.63 TCGA-06-5416-01 14 24905350 24905350 G T KHNYN Missense_Mutation p.E550D 0.24 tolerated(1) probably_damaging(0.996) TCGA-06-5416-01 14 24906319 24906319 A C KHNYN Missense_Mutation p.E622A 0.06 tolerated(0.3) benign(0.007) TCGA-06-5416-01 14 24910015 24910015 G A SDR39U1 Missense_Mutation p.S149F 0.26 deleterious(0.03) benign(0.037) TCGA-06-5416-01 14 24911309 24911309 G A SDR39U1 Intron 0.75 TCGA-06-5416-01 14 24911589 24911589 A G SDR39U1 Missense_Mutation p.L29S 0.30 tolerated(0.15) benign(0.003) TCGA-06-5416-01 14 25043009 25043009 G A CTSG Missense_Mutation p.S201F 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 14 25100212 25100212 T C GZMB 3'UTR 0.32 TCGA-06-5416-01 14 25102204 25102204 G T GZMB Silent p.I40I 0.59 TCGA-06-5416-01 14 26917300 26917300 G A NOVA1 Silent p.F463F 0.57 TCGA-06-5416-01 14 30100143 30100143 C T PRKD1 Missense_Mutation p.E493K 0.27 deleterious(0.04) probably_damaging(0.994) TCGA-06-5416-01 14 30194766 30194766 C T PRKD1 Missense_Mutation p.D127N 0.26 deleterious(0.04) possibly_damaging(0.897) TCGA-06-5416-01 14 31122735 31122735 G A SCFD1 Missense_Mutation p.D266N 0.26 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 14 31185150 31185150 T G SCFD1 Missense_Mutation p.I550M 0.05 tolerated(0.13) possibly_damaging(0.641) TCGA-06-5416-01 14 31188547 31188547 G T SCFD1 Missense_Mutation p.R567I 0.26 tolerated(0.4) possibly_damaging(0.806) TCGA-06-5416-01 14 31354136 31354136 C A COCH Intron 0.30 TCGA-06-5416-01 14 31405786 31405786 G A STRN3 Missense_Mutation p.A254V 0.14 deleterious(0.04) benign(0.265) TCGA-06-5416-01 14 31535502 31535502 G A AP4S1 Missense_Mutation p.E34K 0.25 deleterious(0.03) benign(0.284) TCGA-06-5416-01 14 31576209 31576209 G T HECTD1 Nonsense_Mutation p.S2290* 0.28 TCGA-06-5416-01 14 31578623 31578623 C T HECTD1 Missense_Mutation p.D2154N 0.19 tolerated(0.47) benign(0.003) TCGA-06-5416-01 14 31578756 31578756 C T HECTD1 Silent p.T2109T 0.24 TCGA-06-5416-01 14 31604740 31604740 G A HECTD1 Missense_Mutation p.R1066W 0.35 deleterious(0.01) probably_damaging(0.948) TCGA-06-5416-01 14 31604761 31604761 C A HECTD1 Nonsense_Mutation p.E1059* 0.24 TCGA-06-5416-01 14 31817072 31817072 G A HEATR5A Missense_Mutation p.S624L 0.33 deleterious(0) possibly_damaging(0.767) TCGA-06-5416-01 14 32142560 32142560 G A NUBPL Splice_Site p.X128_splice 0.64 TCGA-06-5416-01 14 32562090 32562090 C T ARHGAP5 Missense_Mutation p.R739C 0.27 tolerated(0.05) probably_damaging(0.999) TCGA-06-5416-01 14 33069944 33069944 G T AKAP6 Missense_Mutation p.E892D 0.42 tolerated(0.06) benign(0.075) TCGA-06-5416-01 14 33292917 33292917 T G AKAP6 Missense_Mutation p.N1966K 0.21 tolerated_low_confidence(0.24) benign(0.002) TCGA-06-5416-01 14 33293030 33293030 C A AKAP6 Nonsense_Mutation p.S2004* 0.34 TCGA-06-5416-01 14 33293812 33293812 C T AKAP6 Missense_Mutation p.P2265S 0.29 tolerated_low_confidence(0.22) benign(0.004) TCGA-06-5416-01 14 34269547 34269547 C A NPAS3 Silent p.S678S 0.23 TCGA-06-5416-01 14 35182093 35182093 G T CFL2 Nonsense_Mutation p.S160* 0.26 TCGA-06-5416-01 14 35240833 35240833 G A BAZ1A Missense_Mutation p.T1062I 0.25 tolerated(0.11) probably_damaging(0.969) TCGA-06-5416-01 14 35331270 35331270 G T BAZ1A Silent p.V124V 0.23 TCGA-06-5416-01 14 35483958 35483958 G A SRP54 Missense_Mutation p.D299N 0.26 deleterious(0) possibly_damaging(0.616) TCGA-06-5416-01 14 35739751 35739751 A G KIAA0391 Silent p.G523G 0.53 TCGA-06-5416-01 14 35742886 35742886 C A KIAA0391 3'UTR 0.22 TCGA-06-5416-01 14 35871637 35871637 T C NFKBIA Missense_Mutation p.D290G 0.32 deleterious(0.01) possibly_damaging(0.473) TCGA-06-5416-01 14 36004884 36004884 G A INSM2 Missense_Mutation p.G476R 0.28 deleterious(0.05) possibly_damaging(0.764) TCGA-06-5416-01 14 36987036 36987036 G A NKX2-1 Missense_Mutation p.A218V 0.46 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 14 37132398 37132398 G A PAX9 Missense_Mutation p.E101K 0.29 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 14 37145642 37145642 G A PAX9 Silent p.T337T 0.57 TCGA-06-5416-01 14 37153041 37153041 A C SLC25A21 Missense_Mutation p.L277R 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 37737881 37737881 T C MIPOL1 Silent p.H90H 0.30 TCGA-06-5416-01 14 38060759 38060759 C T FOXA1 Silent p.E410E 0.34 TCGA-06-5416-01 14 38310819 38310819 C T TTC6 Missense_Mutation p.A1823V 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 14 38679320 38679320 C T SSTR1 Silent p.C242C 0.64 TCGA-06-5416-01 14 39502450 39502450 G T SEC23A Missense_Mutation p.A764D 0.17 deleterious(0.01) benign(0.197) TCGA-06-5416-01 14 39514499 39514499 G T SEC23A Missense_Mutation p.F589L 0.45 deleterious(0) possibly_damaging(0.798) TCGA-06-5416-01 14 39605823 39605823 G A GEMIN2 3'UTR 0.27 TCGA-06-5416-01 14 39623471 39623471 A G TRAPPC6B Missense_Mutation p.F99L 0.29 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 14 39649961 39649961 G T PNN Nonsense_Mutation p.E350* 0.35 TCGA-06-5416-01 14 39716847 39716847 G A MIA2 Missense_Mutation p.E357K 0.60 deleterious(0.01) benign(0.251) TCGA-06-5416-01 14 39819575 39819575 G T CTAGE5 3'UTR 0.46 TCGA-06-5416-01 14 39870573 39870573 G T FBXO33 Missense_Mutation p.S401R 0.65 deleterious(0.03) benign(0.106) TCGA-06-5416-01 14 42356528 42356528 G A LRFN5 Missense_Mutation p.A234T 0.57 tolerated(0.35) benign(0.145) TCGA-06-5416-01 14 44973652 44973652 T G FSCB 3'UTR 0.19 TCGA-06-5416-01 14 45431581 45431581 G A FAM179B 5'UTR 0.22 TCGA-06-5416-01 14 45431917 45431917 G T FAM179B Missense_Mutation p.R98L 0.28 tolerated_low_confidence(0.19) probably_damaging(0.997) TCGA-06-5416-01 14 45473543 45473543 C T FAM179B Missense_Mutation p.S873L 0.28 tolerated(0.06) benign(0.013) TCGA-06-5416-01 14 45564554 45564554 G A PRPF39 Missense_Mutation p.V38I 0.53 deleterious(0.01) benign(0.158) TCGA-06-5416-01 14 45576661 45576661 G T PRPF39 Nonsense_Mutation p.E249* 0.55 TCGA-06-5416-01 14 45633698 45633698 G A FANCM Missense_Mutation p.R573Q 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 47343317 47343317 T C MDGA2 Missense_Mutation p.T842A 0.29 tolerated(1) benign(0.002) TCGA-06-5416-01 14 47351265 47351265 G A MDGA2 Missense_Mutation p.R800C 0.40 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 47389341 47389341 G T MDGA2 Missense_Mutation p.F704L 0.20 deleterious(0) benign(0.269) TCGA-06-5416-01 14 50044224 50044224 C A RPS29 3'UTR 0.18 TCGA-06-5416-01 14 50085533 50085533 T G RPL36AL Missense_Mutation p.K97T 0.28 deleterious(0) benign(0.116) TCGA-06-5416-01 14 50088886 50088886 C T MGAT2 Silent p.F300F 0.61 TCGA-06-5416-01 14 50100175 50100175 C T DNAAF2 Missense_Mutation p.D565N 0.63 tolerated(0.12) possibly_damaging(0.448) TCGA-06-5416-01 14 50146497 50146497 C T POLE2 Missense_Mutation p.R64Q 0.23 tolerated(0.27) benign(0.023) TCGA-06-5416-01 14 50218357 50218357 C A KLHDC1 Missense_Mutation p.S363Y 0.31 deleterious(0.02) benign(0.002) TCGA-06-5416-01 14 50251322 50251322 C A NEMF 3'UTR 0.23 TCGA-06-5416-01 14 50255954 50255954 G T NEMF Silent p.V935V 0.26 TCGA-06-5416-01 14 50255964 50255964 C T NEMF Missense_Mutation p.G932E 0.26 tolerated(1) benign(0.007) TCGA-06-5416-01 14 50267226 50267226 C T NEMF Missense_Mutation p.D762N 0.53 tolerated(0.22) benign(0.001) TCGA-06-5416-01 14 50281517 50281517 C A NEMF Missense_Mutation p.D546Y 0.60 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 14 50296099 50296099 C T NEMF Missense_Mutation p.E331K 0.87 tolerated(0.07) possibly_damaging(0.605) TCGA-06-5416-01 14 50318328 50318328 C T NEMF Missense_Mutation p.E62K 0.20 tolerated(0.12) possibly_damaging(0.544) TCGA-06-5416-01 14 50597425 50597425 C T SOS2 Missense_Mutation p.R1044Q 0.34 deleterious(0.04) possibly_damaging(0.506) TCGA-06-5416-01 14 50611986 50611986 G T SOS2 Missense_Mutation p.L857M 0.26 tolerated(1) possibly_damaging(0.52) TCGA-06-5416-01 14 50626281 50626281 G A SOS2 Missense_Mutation p.R574C 0.51 tolerated(0.09) benign(0.006) TCGA-06-5416-01 14 50626648 50626648 G A SOS2 Silent p.I451I 0.59 TCGA-06-5416-01 14 50649318 50649318 C T SOS2 Missense_Mutation p.E241K 0.55 deleterious(0.01) possibly_damaging(0.574) TCGA-06-5416-01 14 50735957 50735957 C T L2HGDH Missense_Mutation p.R277Q 0.29 tolerated(0.21) benign(0.133) TCGA-06-5416-01 14 51210184 51210184 C T NIN Missense_Mutation p.E1751K 0.59 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 14 51225265 51225265 C A NIN Missense_Mutation p.R828M 0.24 deleterious(0) possibly_damaging(0.739) TCGA-06-5416-01 14 52470934 52470934 A T C14orf166 Missense_Mutation p.K185I 0.21 deleterious(0.02) possibly_damaging(0.591) TCGA-06-5416-01 14 52472108 52472108 C T NID2 3'UTR 0.19 TCGA-06-5416-01 14 52478400 52478400 C T NID2 Missense_Mutation p.G1141D 0.31 tolerated(0.18) probably_damaging(0.933) TCGA-06-5416-01 14 52508981 52508981 G A NID2 Missense_Mutation p.A556V 0.57 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 14 53004362 53004362 C A TXNDC16 Missense_Mutation p.R91I 0.19 deleterious(0.01) possibly_damaging(0.62) TCGA-06-5416-01 14 53224639 53224639 A G STYX Missense_Mutation p.Y143C 0.27 tolerated(0.06) benign(0.393) TCGA-06-5416-01 14 53325154 53325154 C A FERMT2 Missense_Mutation p.D669Y 0.28 deleterious(0) probably_damaging(0.921) TCGA-06-5416-01 14 53529876 53529876 G T DDHD1 Missense_Mutation p.F517L 0.29 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 14 55169166 55169166 G A SAMD4A Missense_Mutation p.D195N 0.10 deleterious(0.02) possibly_damaging(0.787) TCGA-06-5416-01 14 55227008 55227008 C T SAMD4A Missense_Mutation p.R436C 0.20 tolerated(0.06) benign(0) TCGA-06-5416-01 14 55510906 55510906 C T SOCS4 Missense_Mutation p.R383W 0.31 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 14 55607036 55607036 G A LGALS3 Missense_Mutation p.R129H 0.54 deleterious(0.01) benign(0.106) TCGA-06-5416-01 14 55818937 55818937 A G FBXO34 Missense_Mutation p.E610G 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 55819317 55819317 C T FBXO34 3'UTR 0.27 TCGA-06-5416-01 14 55844622 55844622 G A ATG14 Missense_Mutation p.H363Y 0.27 deleterious(0.01) possibly_damaging(0.74) TCGA-06-5416-01 14 55903600 55903600 G T TBPL2 Missense_Mutation p.S96Y 0.30 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-06-5416-01 14 55903639 55903639 G A TBPL2 Missense_Mutation p.S83L 0.31 tolerated_low_confidence(0.11) benign(0.023) TCGA-06-5416-01 14 55907153 55907153 C A TBPL2 Missense_Mutation p.E37D 0.56 tolerated_low_confidence(0.37) benign(0.001) TCGA-06-5416-01 14 57085319 57085319 G A TMEM260 Missense_Mutation p.R355Q 0.26 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 14 57268411 57268411 G A OTX2 3'UTR 0.30 TCGA-06-5416-01 14 57947400 57947400 C A C14orf105 Missense_Mutation p.A190S 0.27 tolerated(0.3) benign(0.281) TCGA-06-5416-01 14 58030981 58030981 T C SLC35F4 Missense_Mutation p.T480A 0.09 tolerated(0.34) probably_damaging(0.942) TCGA-06-5416-01 14 58060779 58060779 C T SLC35F4 Missense_Mutation p.G92D 0.42 tolerated_low_confidence(0.36) benign(0.003) TCGA-06-5416-01 14 58697188 58697188 C T ACTR10 Missense_Mutation p.S287F 0.31 deleterious(0) probably_damaging(0.914) TCGA-06-5416-01 14 58698938 58698938 G A ACTR10 Missense_Mutation p.R342Q 0.24 tolerated(0.07) benign(0.042) TCGA-06-5416-01 14 58737712 58737712 C A PSMA3 Missense_Mutation p.A240D 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 58766527 58766527 G A ARID4A 5'UTR 0.22 TCGA-06-5416-01 14 58831663 58831663 C T ARID4A Silent p.I952I 0.29 TCGA-06-5416-01 14 58869478 58869478 A G TOMM20L Silent p.R87R 0.24 TCGA-06-5416-01 14 58932611 58932611 G T KIAA0586 Missense_Mutation p.K759N 0.29 tolerated(0.06) probably_damaging(0.96) TCGA-06-5416-01 14 59108440 59108440 C A DACT1 Silent p.L203L 0.28 TCGA-06-5416-01 14 59113179 59113179 G A DACT1 Missense_Mutation p.R613H 0.78 tolerated(0.05) probably_damaging(0.999) TCGA-06-5416-01 14 59789736 59789736 G A DAAM1 Missense_Mutation p.M189I 0.25 deleterious(0) unknown(0) TCGA-06-5416-01 14 59814276 59814276 G A DAAM1 Missense_Mutation p.E709K 0.59 deleterious(0.01) probably_damaging(0.957) TCGA-06-5416-01 14 60212465 60212465 C T RTN1 Missense_Mutation p.D326N 0.28 deleterious(0.02) benign(0.403) TCGA-06-5416-01 14 60582059 60582059 A G PCNXL4 Missense_Mutation p.I179V 0.25 tolerated(0.52) benign(0.02) TCGA-06-5416-01 14 60591340 60591340 T G PCNXL4 Silent p.T583T 0.29 TCGA-06-5416-01 14 60620782 60620782 C A DHRS7 Missense_Mutation p.E96D 0.59 tolerated(0.05) benign(0.346) TCGA-06-5416-01 14 60903577 60903577 A G C14orf39 Missense_Mutation p.F584L 0.30 tolerated(0.1) unknown(0) TCGA-06-5416-01 14 60908802 60908802 C A C14orf39 Missense_Mutation p.E517D 0.29 deleterious(0.02) benign(0.008) TCGA-06-5416-01 14 61187108 61187108 A C SIX4 Missense_Mutation p.L307V 0.28 deleterious(0.02) probably_damaging(0.978) TCGA-06-5416-01 14 61446084 61446084 C A TRMT5 Nonsense_Mutation p.E178* 0.56 TCGA-06-5416-01 14 61788992 61788992 G A PRKCH Missense_Mutation p.S58N 0.33 tolerated(0.29) benign(0.182) TCGA-06-5416-01 14 62014573 62014573 G A RP11-47I22.4 Missense_Mutation p.R130H 0.58 deleterious(0) possibly_damaging(0.821) TCGA-06-5416-01 14 62200874 62200874 T C HIF1A Missense_Mutation p.V324A 0.24 tolerated(0.61) possibly_damaging(0.47) TCGA-06-5416-01 14 62547642 62547642 G A SYT16 Missense_Mutation p.A362T 0.25 deleterious(0.02) benign(0.066) TCGA-06-5416-01 14 63269215 63269215 G A KCNH5 Nonsense_Mutation p.R552* 0.29 TCGA-06-5416-01 14 63784472 63784472 C T GPHB5 RNA 0.60 TCGA-06-5416-01 14 64421559 64421559 A G SYNE2 Missense_Mutation p.N238S 0.31 benign(0.038) TCGA-06-5416-01 14 64428327 64428327 C A SYNE2 Missense_Mutation p.T291N 0.33 benign(0.166) TCGA-06-5416-01 14 64445668 64445668 T C SYNE2 Missense_Mutation p.L502S 0.60 possibly_damaging(0.718) TCGA-06-5416-01 14 64453190 64453190 A T SYNE2 Missense_Mutation p.E723V 0.30 possibly_damaging(0.837) TCGA-06-5416-01 14 64473817 64473817 G T SYNE2 Missense_Mutation p.R1485I 0.28 benign(0.001) TCGA-06-5416-01 14 64494408 64494408 C T SYNE2 Missense_Mutation p.S2204F 0.65 probably_damaging(0.943) TCGA-06-5416-01 14 64520299 64520299 C T SYNE2 Missense_Mutation p.A3223V 0.60 benign(0.009) TCGA-06-5416-01 14 64537393 64537393 C A SYNE2 Missense_Mutation p.L3488I 0.27 possibly_damaging(0.489) TCGA-06-5416-01 14 64547295 64547295 C A SYNE2 Missense_Mutation p.P3762H 0.57 probably_damaging(0.95) TCGA-06-5416-01 14 64628908 64628908 G T SYNE2 Nonsense_Mutation p.E5405* 0.05 TCGA-06-5416-01 14 64749392 64749392 C T ESR2 Silent p.K104K 0.23 TCGA-06-5416-01 14 64854963 64854963 C T MTHFD1 5'Flank 0.45 TCGA-06-5416-01 14 64954651 64954651 G A ZBTB25 Nonsense_Mutation p.R100* 0.63 TCGA-06-5416-01 14 64989393 64989393 C T ZBTB1 Nonsense_Mutation p.R391* 0.60 TCGA-06-5416-01 14 65007775 65007775 G A HSPA2 Missense_Mutation p.D70N 0.40 deleterious_low_confidence(0.03) probably_damaging(1) TCGA-06-5416-01 14 65007961 65007961 G A HSPA2 Missense_Mutation p.A132T 0.42 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-06-5416-01 14 65008071 65008071 C T HSPA2 Silent p.L168L 0.32 TCGA-06-5416-01 14 65008230 65008230 G T HSPA2 Missense_Mutation p.E221D 0.29 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 14 65017652 65017652 G A PPP1R36 Missense_Mutation p.R28Q 0.50 tolerated(0.24) benign(0.019) TCGA-06-5416-01 14 65197854 65197854 G T PLEKHG3 Missense_Mutation p.M216I 0.08 deleterious(0) possibly_damaging(0.842) TCGA-06-5416-01 14 65198872 65198872 G T PLEKHG3 Missense_Mutation p.E339D 0.47 deleterious(0.04) benign(0.22) TCGA-06-5416-01 14 65245895 65245895 G A SPTB Silent p.L1515L 0.22 TCGA-06-5416-01 14 65260267 65260267 G A SPTB Missense_Mutation p.A705V 0.37 tolerated(0.08) benign(0.032) TCGA-06-5416-01 14 65262207 65262207 G A SPTB Missense_Mutation p.R498C 0.26 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 14 65268977 65268977 G A SPTB Missense_Mutation p.A178V 0.27 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 65406277 65406277 G A GPX2 Missense_Mutation p.R168C 0.31 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 14 65418357 65418357 G A RAB15 Silent p.Y70Y 0.22 TCGA-06-5416-01 14 68114862 68114862 G A ARG2 Missense_Mutation p.R274Q 0.56 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 14 68229409 68229409 A G ZFYVE26 Missense_Mutation p.Y2047H 0.26 tolerated(0.19) probably_damaging(0.989) TCGA-06-5416-01 14 68249737 68249737 G A ZFYVE26 Nonsense_Mutation p.R1378* 0.19 TCGA-06-5416-01 14 68252875 68252875 T G ZFYVE26 Missense_Mutation p.K1032T 0.07 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 14 69521253 69521253 G A DCAF5 Missense_Mutation p.A717V 0.26 tolerated_low_confidence(0.2) benign(0.001) TCGA-06-5416-01 14 69695768 69695768 G A EXD2 Missense_Mutation p.R190Q 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 14 69866085 69866085 G A SLC39A9 5'UTR 0.34 TCGA-06-5416-01 14 70234985 70234985 G T SRSF5 Missense_Mutation p.G38C 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 70238117 70238117 C A SRSF5 Missense_Mutation p.S253Y 0.51 tolerated_low_confidence(0.06) benign(0.184) TCGA-06-5416-01 14 70490022 70490022 G T SMOC1 Missense_Mutation p.E383D 0.27 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 14 70924765 70924765 A C ADAM21 Missense_Mutation p.Q183H 0.59 tolerated(0.17) probably_damaging(0.921) TCGA-06-5416-01 14 70990623 70990623 A C ADAM20 Missense_Mutation p.N334K 0.26 tolerated(0.56) benign(0.002) TCGA-06-5416-01 14 71058066 71058066 C T MED6 Missense_Mutation p.E167K 0.22 tolerated(0.1) benign(0.186) TCGA-06-5416-01 14 71064401 71064401 G T MED6 Missense_Mutation p.P39H 0.23 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 14 71209301 71209301 C T MAP3K9 Missense_Mutation p.R445H 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 14 71444852 71444852 G A PCNX Missense_Mutation p.E600K 0.51 deleterious(0.01) possibly_damaging(0.608) TCGA-06-5416-01 14 71478247 71478247 G A PCNX Missense_Mutation p.R920Q 0.29 tolerated(0.39) possibly_damaging(0.563) TCGA-06-5416-01 14 71479877 71479877 G A PCNX Missense_Mutation p.G985D 0.23 tolerated(0.3) possibly_damaging(0.611) TCGA-06-5416-01 14 72085531 72085531 G A SIPA1L1 Missense_Mutation p.R519Q 0.27 deleterious(0) possibly_damaging(0.788) TCGA-06-5416-01 14 72431580 72431580 C T RGS6 Silent p.I24I 0.62 TCGA-06-5416-01 14 72925007 72925007 C T RGS6 Silent p.I88I 0.28 TCGA-06-5416-01 14 72944993 72944993 A G RGS6 Silent p.A270A 0.29 TCGA-06-5416-01 14 73137953 73137953 G A DPF3 Missense_Mutation p.T322M 0.29 deleterious_low_confidence(0.01) benign(0.003) TCGA-06-5416-01 14 73190363 73190363 C T DPF3 Missense_Mutation p.R168Q 0.29 deleterious(0.01) possibly_damaging(0.776) TCGA-06-5416-01 14 73238447 73238447 C A DPF3 Missense_Mutation p.G63C 0.56 deleterious(0.01) probably_damaging(0.991) TCGA-06-5416-01 14 73464710 73464710 C T ZFYVE1 Missense_Mutation p.R266Q 0.34 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 14 73572963 73572963 T G RBM25 Silent p.A479A 0.39 TCGA-06-5416-01 14 73729200 73729200 G A PAPLN Silent p.S769S 0.26 TCGA-06-5416-01 14 73730938 73730938 G A PAPLN Missense_Mutation p.G934R 0.21 deleterious(0.01) possibly_damaging(0.735) TCGA-06-5416-01 14 74062279 74062279 A C ACOT4 Missense_Mutation p.E396A 0.26 tolerated(0.09) benign(0.005) TCGA-06-5416-01 14 74086418 74086418 G C ACOT6 Missense_Mutation p.A167P 0.18 tolerated(1) benign(0.032) TCGA-06-5416-01 14 74400976 74400976 G T FAM161B Missense_Mutation p.L706I 0.58 deleterious_low_confidence(0.02) benign(0.356) TCGA-06-5416-01 14 74426196 74426196 A C COQ6 Missense_Mutation p.K288Q 0.54 tolerated(0.45) benign(0.005) TCGA-06-5416-01 14 74527373 74527373 G T ALDH6A1 Missense_Mutation p.A527D 0.17 tolerated(0.34) benign(0.193) TCGA-06-5416-01 14 74531458 74531458 C A CCDC176 3'UTR 0.28 TCGA-06-5416-01 14 74539282 74539282 G A ALDH6A1 Silent p.F48F 0.31 TCGA-06-5416-01 14 74753461 74753461 G A ABCD4 Silent p.I565I 0.23 TCGA-06-5416-01 14 74769705 74769705 G T ABCD4 5'UTR 0.27 TCGA-06-5416-01 14 74824390 74824390 C G VRTN Missense_Mutation p.Q302E 0.21 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 14 74876241 74876241 C T SYNDIG1L Silent p.R69R 0.61 TCGA-06-5416-01 14 74988630 74988630 C T LTBP2 Silent p.A924A 0.54 TCGA-06-5416-01 14 75139921 75139921 A G AREL1 Missense_Mutation p.F387L 0.25 tolerated(0.08) probably_damaging(0.952) TCGA-06-5416-01 14 75142843 75142843 C T AREL1 Splice_Site p.X278_splice 0.24 TCGA-06-5416-01 14 75150129 75150129 G A AREL1 Silent p.V117V 0.30 TCGA-06-5416-01 14 75230514 75230514 C T YLPM1 Missense_Mutation p.P108S 0.29 unknown(0) TCGA-06-5416-01 14 75265970 75265970 C T YLPM1 Missense_Mutation p.R1324C 0.52 probably_damaging(0.917) TCGA-06-5416-01 14 75269337 75269337 A G YLPM1 Silent p.E1493E 0.64 TCGA-06-5416-01 14 75325156 75325156 C T PROX2 Intron 0.20 TCGA-06-5416-01 14 75361054 75361054 C A DLST Missense_Mutation p.L238M 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 75368921 75368921 A G DLST Missense_Mutation p.Y417C 0.48 deleterious(0) probably_damaging(0.92) TCGA-06-5416-01 14 75377973 75377973 G T RPS6KL1 Missense_Mutation p.F214L 0.32 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 14 75413626 75413626 C T PGF Intron 0.13 TCGA-06-5416-01 14 75513627 75513627 A T MLH3 Nonsense_Mutation p.L911* 0.30 TCGA-06-5416-01 14 75514051 75514051 T C MLH3 Missense_Mutation p.T770A 0.06 tolerated(0.16) benign(0.005) TCGA-06-5416-01 14 75551085 75551085 C A NEK9 3'UTR 0.27 TCGA-06-5416-01 14 75551204 75551204 C T NEK9 3'UTR 0.25 TCGA-06-5416-01 14 75583979 75583979 C T NEK9 Silent p.K227K 0.35 TCGA-06-5416-01 14 76112905 76112905 G A FLVCR2 3'UTR 0.62 TCGA-06-5416-01 14 76966293 76966293 A G ESRRB Missense_Mutation p.T462A 0.09 tolerated_low_confidence(0.48) benign(0.002) TCGA-06-5416-01 14 77242556 77242556 C T VASH1 Silent p.R284R 0.68 TCGA-06-5416-01 14 77255716 77255716 C T ANGEL1 Missense_Mutation p.R623Q 0.29 tolerated(0.69) benign(0.009) TCGA-06-5416-01 14 77751885 77751885 G A POMT2 Missense_Mutation p.R475C 0.33 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 14 77757690 77757690 G T POMT2 Missense_Mutation p.L384M 0.11 tolerated(0.23) benign(0.411) TCGA-06-5416-01 14 77844446 77844446 G T SAMD15 Missense_Mutation p.D229Y 0.24 deleterious(0.01) probably_damaging(0.94) TCGA-06-5416-01 14 77873184 77873184 G A NOXRED1 Missense_Mutation p.R189W 0.64 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 14 77894796 77894796 G A VIPAS39 Missense_Mutation p.R460C 0.24 deleterious(0.02) possibly_damaging(0.625) TCGA-06-5416-01 14 77978641 77978641 C A SPTLC2 Nonsense_Mutation p.E559* 0.33 TCGA-06-5416-01 14 78285457 78285457 G A ADCK1 Splice_Site p.X45_splice 0.50 TCGA-06-5416-01 14 78397873 78397873 C T ADCK1 Missense_Mutation p.R407C 0.29 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 14 79175915 79175915 G T NRXN3 Missense_Mutation p.G153V 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 81259444 81259444 C T CEP128 Missense_Mutation p.R407H 0.22 tolerated(0.3) benign(0.002) TCGA-06-5416-01 14 81382803 81382803 C T CEP128 Missense_Mutation p.R30Q 0.56 tolerated(0.3) benign(0.01) TCGA-06-5416-01 14 81422182 81422182 G A TSHR Missense_Mutation p.S53N 0.28 tolerated(0.98) benign(0.001) TCGA-06-5416-01 14 81609617 81609617 C T TSHR Silent p.F405F 0.64 TCGA-06-5416-01 14 81659022 81659022 C T GTF2A1 Silent p.P258P 0.29 TCGA-06-5416-01 14 86089775 86089775 C T FLRT2 Silent p.C639C 0.32 TCGA-06-5416-01 14 88407866 88407866 C A GALC Missense_Mutation p.E569D 0.08 tolerated(0.08) probably_damaging(0.956) TCGA-06-5416-01 14 88411996 88411996 C T GALC Missense_Mutation p.G524D 0.29 tolerated(0.06) possibly_damaging(0.597) TCGA-06-5416-01 14 88452861 88452861 C A GALC Missense_Mutation p.K138N 0.11 deleterious(0) probably_damaging(1) TCGA-06-5416-01 14 88477917 88477917 T C GPR65 Silent p.F242F 0.36 TCGA-06-5416-01 14 88904612 88904612 A G SPATA7 Missense_Mutation p.K549R 0.28 tolerated(0.2) benign(0.041) TCGA-06-5416-01 14 88946363 88946363 G A PTPN21 Missense_Mutation p.S471L 0.13 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 14 89029463 89029463 G A ZC3H14 5'UTR 0.55 TCGA-06-5416-01 14 89044486 89044486 T C ZC3H14 Splice_Site p.X427_splice 0.07 TCGA-06-5416-01 14 89077272 89077272 G A ZC3H14 Missense_Mutation p.R731Q 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 14 89087486 89087486 T C EML5 Missense_Mutation p.T1725A 0.71 deleterious(0) possibly_damaging(0.792) TCGA-06-5416-01 14 89168819 89168819 G A EML5 Missense_Mutation p.P737S 0.08 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 14 89181473 89181473 T C EML5 Silent p.P418P 0.18 TCGA-06-5416-01 14 90730030 90730030 C A PSMC1 Missense_Mutation p.L102M 0.39 tolerated(0.19) benign(0.06) TCGA-06-5416-01 14 90769411 90769411 C T NRDE2 Missense_Mutation p.R355Q 0.48 tolerated(0.05) benign(0.087) TCGA-06-5416-01 14 90783076 90783076 C A NRDE2 Nonsense_Mutation p.E85* 0.07 TCGA-06-5416-01 14 91636380 91636380 C T C14orf159 Silent p.F97F 0.73 TCGA-06-5416-01 14 91647599 91647599 C T C14orf159 Missense_Mutation p.P267L 0.76 deleterious(0.02) benign(0.014) TCGA-06-5416-01 14 92268600 92268600 G A TC2N Missense_Mutation p.S156L 0.09 deleterious(0.01) probably_damaging(0.957) TCGA-06-5416-01 14 92343950 92343950 C T FBLN5 Missense_Mutation p.V356M 0.07 tolerated(0.22) benign(0.004) TCGA-06-5416-01 14 92469909 92469909 T C TRIP11 Missense_Mutation p.T1471A 0.32 tolerated(0.72) benign(0.004) TCGA-06-5416-01 14 92472435 92472435 G A TRIP11 Nonsense_Mutation p.Q629* 0.30 TCGA-06-5416-01 14 92474165 92474165 T C TRIP11 Missense_Mutation p.N449S 0.34 tolerated(0.9) benign(0.009) TCGA-06-5416-01 14 92506071 92506071 G T TRIP11 5'UTR 0.46 TCGA-06-5416-01 14 92920384 92920384 C T SLC24A4 Missense_Mutation p.R341W 0.36 tolerated(0.09) benign(0.158) TCGA-06-5416-01 14 92959906 92959906 C T SLC24A4 Silent p.F601F 0.09 TCGA-06-5416-01 14 93118962 93118962 G A RIN3 Missense_Mutation p.S523N 0.73 tolerated(0.12) benign(0.408) TCGA-06-5416-01 14 93179217 93179217 C A LGMN Splice_Site p.X182_splice 0.25 TCGA-06-5416-01 14 93263801 93263801 C A GOLGA5 Missense_Mutation p.L7I 0.27 tolerated(0.26) probably_damaging(0.944) TCGA-06-5416-01 14 93264238 93264238 C T GOLGA5 Silent p.S152S 0.42 TCGA-06-5416-01 14 93686731 93686731 G T UBR7 Missense_Mutation p.R366I 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 14 93709132 93709132 T C BTBD7 Silent p.R962R 0.80 TCGA-06-5416-01 14 93727995 93727995 A C BTBD7 Missense_Mutation p.L467R 0.05 deleterious(0) possibly_damaging(0.832) TCGA-06-5416-01 14 94046536 94046536 C T UNC79 Silent p.H648H 0.38 TCGA-06-5416-01 14 94089181 94089181 G A UNC79 Missense_Mutation p.D1691N 0.31 tolerated_low_confidence(0.07) benign(0.135) TCGA-06-5416-01 14 94401096 94401096 C T ASB2 Missense_Mutation p.R605Q 0.08 deleterious(0.03) probably_damaging(0.937) TCGA-06-5416-01 14 94505356 94505356 G A OTUB2 Silent p.G49G 0.78 TCGA-06-5416-01 14 94511013 94511013 G A OTUB2 Missense_Mutation p.D129N 0.11 deleterious(0.05) probably_damaging(1) TCGA-06-5416-01 14 94511097 94511097 G A OTUB2 Missense_Mutation p.E157K 0.37 tolerated(0.13) benign(0.036) TCGA-06-5416-01 14 94528787 94528787 T C DDX24 Missense_Mutation p.D300G 0.38 tolerated(0.1) benign(0.015) TCGA-06-5416-01 14 94642400 94642400 G T PPP4R4 Nonsense_Mutation p.E43* 0.27 TCGA-06-5416-01 14 94741817 94741817 G A PPP4R4 Silent p.K852K 0.37 TCGA-06-5416-01 14 94780479 94780479 C T SERPINA6 Silent p.Q169Q 0.07 TCGA-06-5416-01 14 94780965 94780965 G T SERPINA6 Silent p.T7T 0.37 TCGA-06-5416-01 14 94914594 94914594 G T SERPINA11 Missense_Mutation p.S173Y 0.36 deleterious(0.03) possibly_damaging(0.462) TCGA-06-5416-01 14 94914934 94914934 G A SERPINA11 Missense_Mutation p.R60C 0.36 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 14 94915007 94915007 G A SERPINA11 Silent p.P35P 0.72 TCGA-06-5416-01 14 94933658 94933658 G A SERPINA9 Silent p.G248G 0.65 TCGA-06-5416-01 14 94962734 94962734 C A SERPINA12 Missense_Mutation p.R294I 0.74 deleterious(0) probably_damaging(0.938) TCGA-06-5416-01 14 95054134 95054134 C T SERPINA5 Silent p.F145F 0.09 TCGA-06-5416-01 14 95085696 95085696 G T SERPINA3 Missense_Mutation p.G270C 0.81 deleterious(0) possibly_damaging(0.811) TCGA-06-5416-01 14 95562696 95562696 C A DICER1 Missense_Mutation p.D1521Y 0.73 tolerated(0.08) possibly_damaging(0.87) TCGA-06-5416-01 14 95669981 95669981 C T CLMN Missense_Mutation p.D569N 0.37 deleterious_low_confidence(0.05) benign(0.039) TCGA-06-5416-01 14 95884142 95884142 T C SYNE3 3'UTR 0.76 TCGA-06-5416-01 14 96703490 96703490 G A BDKRB2 Missense_Mutation p.D16N 0.38 tolerated_low_confidence(0.18) benign(0.006) TCGA-06-5416-01 14 96706887 96706887 G T BDKRB2 Missense_Mutation p.E74D 0.06 tolerated(0.17) probably_damaging(0.999) TCGA-06-5416-01 14 96707614 96707614 G A BDKRB2 Missense_Mutation p.A317T 0.81 tolerated(0.22) benign(0.3) TCGA-06-5416-01 14 96758434 96758434 C T ATG2B Missense_Mutation p.E1810K 0.76 deleterious(0) probably_damaging(0.931) TCGA-06-5416-01 14 97002312 97002312 G A PAPOLA Missense_Mutation p.V336I 0.17 tolerated(0.7) benign(0.024) TCGA-06-5416-01 14 99724031 99724031 C T BCL11B Silent p.G68G 0.36 TCGA-06-5416-01 14 99865361 99865361 C T SETD3 Silent p.K480K 0.39 TCGA-06-5416-01 14 99879341 99879341 C T SETD3 Missense_Mutation p.V266M 0.07 tolerated(0.21) possibly_damaging(0.626) TCGA-06-5416-01 15 100269825 100269825 C A LYSMD4 Nonsense_Mutation p.E133* 0.44 TCGA-06-5416-01 15 100533376 100533376 C A ADAMTS17 Missense_Mutation p.W942C 0.36 deleterious(0) benign(0.004) TCGA-06-5416-01 15 101432758 101432758 T G ALDH1A3 Missense_Mutation p.F130C 0.41 deleterious(0.03) probably_damaging(0.962) TCGA-06-5416-01 15 101434154 101434154 C T ALDH1A3 Intron 0.47 TCGA-06-5416-01 15 101528944 101528944 C T LRRK1 Missense_Mutation p.P180L 0.40 tolerated(0.23) possibly_damaging(0.745) TCGA-06-5416-01 15 101566306 101566306 C G LRRK1 Missense_Mutation p.A790G 0.32 tolerated(0.11) probably_damaging(0.916) TCGA-06-5416-01 15 101591938 101591938 C T LRRK1 Silent p.D1154D 0.34 TCGA-06-5416-01 15 101592076 101592076 G T LRRK1 Silent p.R1200R 0.39 TCGA-06-5416-01 15 101597168 101597168 C T LRRK1 Silent p.I1480I 0.30 TCGA-06-5416-01 15 101606859 101606859 T C LRRK1 Missense_Mutation p.V1928A 0.47 deleterious(0.02) benign(0.06) TCGA-06-5416-01 15 101718460 101718460 G A CHSY1 Silent p.L514L 0.39 TCGA-06-5416-01 15 101847479 101847479 C A PCSK6 Missense_Mutation p.R916S 0.41 tolerated(1) benign(0.003) TCGA-06-5416-01 15 101905200 101905200 G A PCSK6 Intron 0.19 TCGA-06-5416-01 15 101905204 101905204 C A PCSK6 Intron 0.19 TCGA-06-5416-01 15 102198054 102198054 G T TARSL2 Missense_Mutation p.F693L 0.35 tolerated(0.39) benign(0.032) TCGA-06-5416-01 15 102226230 102226230 G T TARSL2 Silent p.L452L 0.43 TCGA-06-5416-01 15 102312410 102312410 C A RN7SL209P 3'Flank 0.38 TCGA-06-5416-01 15 102462473 102462473 G A OR4F4 Missense_Mutation p.L264F 0.24 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 15 102462513 102462513 A C OR4F4 Missense_Mutation p.I250M 0.17 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 15 20193201 20193201 G A IGHV3OR15-7 Silent p.L23L 0.22 TCGA-06-5416-01 15 20649600 20649600 C T HERC2P3 RNA 0.28 TCGA-06-5416-01 15 22383330 22383330 T G OR4N4 Missense_Mutation p.I286M 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 15 22383506 22383506 C T OR4N4 3'UTR 0.20 TCGA-06-5416-01 15 22862986 22862986 A G TUBGCP5 Silent p.V669V 0.52 TCGA-06-5416-01 15 22955251 22955251 C T CYFIP1 Missense_Mutation p.R549C 0.58 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 15 23261081 23261081 G A GOLGA8I Nonsense_Mutation p.W252* 0.45 TCGA-06-5416-01 15 23310067 23310067 G A HERC2P2 RNA 0.21 TCGA-06-5416-01 15 23811635 23811635 G A MKRN3 Missense_Mutation p.A236T 0.28 tolerated(0.16) benign(0.371) TCGA-06-5416-01 15 23811912 23811912 G A MKRN3 Missense_Mutation p.R328H 0.26 tolerated(0.06) probably_damaging(1) TCGA-06-5416-01 15 24921212 24921212 C T NPAP1 Silent p.V66V 0.34 TCGA-06-5416-01 15 24922789 24922789 C T NPAP1 Missense_Mutation p.S592F 0.41 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 15 24923627 24923627 C A NPAP1 Silent p.V871V 0.45 TCGA-06-5416-01 15 25223728 25223728 T C SNRPN 3'UTR 0.45 TCGA-06-5416-01 15 25332889 25332889 G A SNORD116-20 RNA 0.05 TCGA-06-5416-01 15 25346775 25346775 A G SNORD116-27 RNA 0.31 TCGA-06-5416-01 15 25453289 25453289 C T SNORD115-21 RNA 0.36 TCGA-06-5416-01 15 25470215 25470215 C A SNORD115-27 3'Flank 0.48 TCGA-06-5416-01 15 25488828 25488828 A G SNORD115-40 RNA 0.43 TCGA-06-5416-01 15 25615832 25615832 G A UBE3A Missense_Mutation p.R500C 0.42 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 15 25616084 25616084 C A UBE3A Nonsense_Mutation p.E416* 0.47 TCGA-06-5416-01 15 25616255 25616255 G A UBE3A Nonsense_Mutation p.R359* 0.41 TCGA-06-5416-01 15 25926047 25926047 C T ATP10A Silent p.S1196S 0.40 TCGA-06-5416-01 15 25972364 25972364 G A ATP10A Silent p.L264L 0.35 TCGA-06-5416-01 15 26107870 26107870 C A ATP10A Missense_Mutation p.R125M 0.30 deleterious(0) benign(0.067) TCGA-06-5416-01 15 26866631 26866631 G A GABRB3 Silent p.L97L 0.48 TCGA-06-5416-01 15 27184397 27184397 G T GABRA5 Intron 0.41 TCGA-06-5416-01 15 27188474 27188474 C T GABRA5 Silent p.F330F 0.41 TCGA-06-5416-01 15 28263627 28263627 C T OCA2 Silent p.P241P 0.82 TCGA-06-5416-01 15 28277231 28277231 C A OCA2 Missense_Mutation p.R102S 0.40 tolerated_low_confidence(0.06) benign(0.071) TCGA-06-5416-01 15 28375347 28375347 G A HERC2 Missense_Mutation p.A4255V 0.47 probably_damaging(0.996) TCGA-06-5416-01 15 28375685 28375685 G T HERC2 Missense_Mutation p.S4209Y 0.30 probably_damaging(1) TCGA-06-5416-01 15 28386977 28386977 G A HERC2 Missense_Mutation p.R3906C 0.39 possibly_damaging(0.513) TCGA-06-5416-01 15 28424310 28424310 A G HERC2 Silent p.G2999G 0.28 TCGA-06-5416-01 15 28474382 28474382 C T HERC2 Missense_Mutation p.R1744Q 0.37 benign(0.033) TCGA-06-5416-01 15 28482202 28482202 C A HERC2 Missense_Mutation p.D1304Y 0.29 probably_damaging(0.956) TCGA-06-5416-01 15 28502261 28502261 C T HERC2 Silent p.P821P 0.26 TCGA-06-5416-01 15 28510815 28510815 C T HERC2 Missense_Mutation p.D607N 0.36 probably_damaging(0.995) TCGA-06-5416-01 15 28514504 28514504 C T HERC2 Missense_Mutation p.E446K 0.46 benign(0) TCGA-06-5416-01 15 28544584 28544584 C A HERC2 Nonsense_Mutation p.E51* 0.39 TCGA-06-5416-01 15 29346510 29346510 G A APBA2 Nonsense_Mutation p.W141* 0.40 TCGA-06-5416-01 15 29346634 29346634 G T APBA2 Missense_Mutation p.D183Y 0.40 deleterious_low_confidence(0.03) benign(0.281) TCGA-06-5416-01 15 30018583 30018583 C T TJP1 Silent p.K804K 0.39 TCGA-06-5416-01 15 30020172 30020172 C T TJP1 Missense_Mutation p.R690H 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 31206068 31206068 G T FAN1 Missense_Mutation p.A529S 0.40 deleterious(0.04) benign(0.055) TCGA-06-5416-01 15 31229417 31229417 C T FAN1 Silent p.C1004C 0.37 TCGA-06-5416-01 15 31233720 31233720 C T MTMR10 Missense_Mutation p.G763R 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 31233940 31233940 G A MTMR10 Silent p.V689V 0.34 TCGA-06-5416-01 15 31318377 31318377 C T TRPM1 Silent p.S1215S 0.37 TCGA-06-5416-01 15 31320619 31320619 C T TRPM1 Missense_Mutation p.G1087D 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 15 31321573 31321573 C T TRPM1 Splice_Site p.X1067_splice 0.45 TCGA-06-5416-01 15 31359391 31359391 C A TRPM1 Splice_Site p.X182_splice 0.41 TCGA-06-5416-01 15 32460274 32460274 C T CHRNA7 Missense_Mutation p.A404V 0.21 tolerated(0.3) benign(0.002) TCGA-06-5416-01 15 32929489 32929489 C T ARHGAP11A Missense_Mutation p.R839C 0.36 deleterious(0.01) benign(0.181) TCGA-06-5416-01 15 32930128 32930128 T C ARHGAP11A 3'UTR 0.21 TCGA-06-5416-01 15 33023242 33023242 C A GREM1 Missense_Mutation p.F117L 0.38 deleterious(0.03) possibly_damaging(0.649) TCGA-06-5416-01 15 33091092 33091092 G T FMN1 Missense_Mutation p.P1125H 0.31 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 15 33194157 33194157 G A FMN1 Silent p.I931I 0.52 TCGA-06-5416-01 15 33261025 33261025 G T FMN1 Silent p.L736L 0.30 TCGA-06-5416-01 15 33955123 33955123 C T RYR3 Nonsense_Mutation p.R1798* 0.42 TCGA-06-5416-01 15 34015046 34015046 C T RYR3 Silent p.I2250I 0.39 TCGA-06-5416-01 15 34018632 34018632 C A RYR3 Missense_Mutation p.L2320M 0.29 probably_damaging(0.997) TCGA-06-5416-01 15 34018635 34018635 C T RYR3 Missense_Mutation p.R2321C 0.26 probably_damaging(0.994) TCGA-06-5416-01 15 34023892 34023892 G A RYR3 Missense_Mutation p.C2474Y 0.38 probably_damaging(0.999) TCGA-06-5416-01 15 34030684 34030684 T G RYR3 Missense_Mutation p.Y2517D 0.39 probably_damaging(0.999) TCGA-06-5416-01 15 34030758 34030758 T G RYR3 Silent p.L2541L 0.34 TCGA-06-5416-01 15 34030779 34030779 G A RYR3 Silent p.S2548S 0.31 TCGA-06-5416-01 15 34034573 34034573 C A RYR3 Silent p.S2609S 0.41 TCGA-06-5416-01 15 34064246 34064246 C T RYR3 Missense_Mutation p.T2981M 0.31 possibly_damaging(0.535) TCGA-06-5416-01 15 34130711 34130711 C T RYR3 Missense_Mutation p.A4177V 0.40 benign(0) TCGA-06-5416-01 15 34130712 34130712 G A RYR3 Silent p.A4177A 0.34 TCGA-06-5416-01 15 34140564 34140564 G A RYR3 Missense_Mutation p.E4524K 0.40 benign(0.01) TCGA-06-5416-01 15 34530488 34530488 A C SLC12A6 Missense_Mutation p.I916S 0.29 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 15 34549861 34549861 G T SLC12A6 Silent p.V224V 0.28 TCGA-06-5416-01 15 34647701 34647701 C T NUTM1 Nonsense_Mutation p.R470* 0.31 TCGA-06-5416-01 15 35082497 35082497 C T ACTC1 3'UTR 0.39 TCGA-06-5416-01 15 35148932 35148932 A C AQR 3'UTR 0.54 TCGA-06-5416-01 15 35202442 35202442 G A AQR Silent p.V519V 0.43 TCGA-06-5416-01 15 35274173 35274173 G A ZNF770 Missense_Mutation p.S488F 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 15 38228533 38228533 C A TMCO5A Silent p.I3I 0.36 TCGA-06-5416-01 15 38632019 38632019 A C SPRED1 Silent p.R169R 0.42 TCGA-06-5416-01 15 38632082 38632082 A C SPRED1 Missense_Mutation p.S190R 0.37 tolerated(0.55) benign(0.367) TCGA-06-5416-01 15 38782687 38782687 C A RASGRP1 3'UTR 0.23 TCGA-06-5416-01 15 38808442 38808442 C T RASGRP1 Missense_Mutation p.E211K 0.07 deleterious(0) possibly_damaging(0.851) TCGA-06-5416-01 15 38988874 38988874 A G C15orf53 Silent p.E22E 0.36 TCGA-06-5416-01 15 39544540 39544540 C T C15orf54 Silent p.I68I 0.43 TCGA-06-5416-01 15 39876249 39876249 G A THBS1 Missense_Mutation p.R255H 0.10 tolerated(0.09) benign(0.008) TCGA-06-5416-01 15 39879633 39879633 C T THBS1 Silent p.R402R 0.39 TCGA-06-5416-01 15 40590823 40590823 C T PLCB2 Missense_Mutation p.D313N 0.33 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 15 40630821 40630821 T C C15orf52 Missense_Mutation p.N187S 0.48 tolerated(0.73) benign(0.01) TCGA-06-5416-01 15 40661797 40661797 C T DISP2 Nonsense_Mutation p.Q1162* 0.36 TCGA-06-5416-01 15 40675059 40675059 C A KNSTRN Missense_Mutation p.P8H 0.54 deleterious_low_confidence(0.01) benign(0.443) TCGA-06-5416-01 15 40675157 40675157 G A KNSTRN Missense_Mutation p.A41T 0.38 deleterious_low_confidence(0) possibly_damaging(0.892) TCGA-06-5416-01 15 40684173 40684173 G T KNSTRN Missense_Mutation p.E257D 0.26 tolerated(1) benign(0) TCGA-06-5416-01 15 40751845 40751845 G A BAHD1 Silent p.S394S 0.34 TCGA-06-5416-01 15 40764668 40764668 G T CHST14 3'UTR 0.56 TCGA-06-5416-01 15 40917238 40917238 G T CASC5 Missense_Mutation p.K1618N 0.43 tolerated(0.16) possibly_damaging(0.576) TCGA-06-5416-01 15 41106418 41106418 G T ZFYVE19 Missense_Mutation p.E470D 0.44 tolerated_low_confidence(0.27) benign(0.298) TCGA-06-5416-01 15 41120629 41120629 C T PPP1R14D Missense_Mutation p.E71K 0.46 deleterious_low_confidence(0) possibly_damaging(0.621) TCGA-06-5416-01 15 41137051 41137051 C A SPINT1 Missense_Mutation p.A100E 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 41247644 41247644 G A CHAC1 Missense_Mutation p.R156Q 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 41366614 41366614 G A INO80 Silent p.I427I 0.38 TCGA-06-5416-01 15 41601906 41601906 A C OIP5 3'UTR 0.52 TCGA-06-5416-01 15 41689086 41689086 C T NDUFAF1 Missense_Mutation p.D58N 0.41 tolerated_low_confidence(0.47) benign(0.001) TCGA-06-5416-01 15 41763487 41763487 T G RTF1 Silent p.T381T 0.32 TCGA-06-5416-01 15 41796625 41796625 C T LTK Missense_Mutation p.R754H 0.31 tolerated_low_confidence(0.18) benign(0.021) TCGA-06-5416-01 15 41812956 41812956 C T RPAP1 Missense_Mutation p.R1143H 0.50 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 15 42041016 42041016 G A MGA Missense_Mutation p.M1798I 0.34 tolerated(0.14) possibly_damaging(0.459) TCGA-06-5416-01 15 42041075 42041075 G A MGA Missense_Mutation p.R1818Q 0.36 tolerated(0.15) probably_damaging(0.997) TCGA-06-5416-01 15 42104304 42104304 C T MAPKBP1 Silent p.I159I 0.43 TCGA-06-5416-01 15 42107876 42107876 G T MAPKBP1 Nonsense_Mutation p.E464* 0.43 TCGA-06-5416-01 15 42108764 42108764 G A MAPKBP1 Missense_Mutation p.E507K 0.28 deleterious(0.03) possibly_damaging(0.874) TCGA-06-5416-01 15 42133082 42133082 G T PLA2G4B Missense_Mutation p.E341D 0.42 tolerated(0.17) benign(0.059) TCGA-06-5416-01 15 42185518 42185518 A C SPTBN5 Missense_Mutation p.F60V 0.31 probably_damaging(1) TCGA-06-5416-01 15 42192862 42192862 G A EHD4 Missense_Mutation p.S536F 0.47 tolerated(0.06) benign(0.073) TCGA-06-5416-01 15 42235300 42235300 C T EHD4 Missense_Mutation p.G159D 0.19 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 15 42364081 42364081 G A PLA2G4D Silent p.V488V 0.42 TCGA-06-5416-01 15 42459732 42459732 G A VPS39 Nonsense_Mutation p.R413* 0.42 TCGA-06-5416-01 15 42640300 42640300 G T GANC Splice_Site p.X769_splice 0.34 TCGA-06-5416-01 15 42646552 42646552 C A GANC 3'Flank 0.36 TCGA-06-5416-01 15 42704055 42704055 G T CAPN3 3'UTR 0.41 TCGA-06-5416-01 15 42729507 42729507 C T ZNF106 Missense_Mutation p.V1534I 0.29 deleterious(0.04) probably_damaging(0.997) TCGA-06-5416-01 15 42731777 42731777 G A ZNF106 Missense_Mutation p.S1310F 0.08 deleterious(0.01) possibly_damaging(0.721) TCGA-06-5416-01 15 42749166 42749166 C A ZNF106 Nonsense_Mutation p.E80* 0.41 TCGA-06-5416-01 15 42749462 42749462 G A ZNF106 5'UTR 0.37 TCGA-06-5416-01 15 42820560 42820560 A G SNAP23 Missense_Mutation p.T123A 0.40 tolerated(0.49) benign(0.158) TCGA-06-5416-01 15 42837431 42837431 G A LRRC57 Silent p.C174C 0.51 TCGA-06-5416-01 15 43328761 43328761 C T UBR1 Missense_Mutation p.E685K 0.35 tolerated(0.49) possibly_damaging(0.83) TCGA-06-5416-01 15 43438801 43438801 G T TMEM62 Missense_Mutation p.R196I 0.38 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 15 43568581 43568581 G T TGM7 3'UTR 0.30 TCGA-06-5416-01 15 43749017 43749017 C A TP53BP1 Missense_Mutation p.D597Y 0.36 deleterious(0.04) benign(0.124) TCGA-06-5416-01 15 43897491 43897491 C T STRC Missense_Mutation p.A1301T 0.58 tolerated(0.19) benign(0.021) TCGA-06-5416-01 15 44028388 44028388 G A RNU6-354P 5'Flank 0.07 TCGA-06-5416-01 15 44105184 44105184 C T MFAP1 Splice_Site p.X296_splice 0.37 TCGA-06-5416-01 15 44705687 44705687 G T CASC4 3'UTR 0.44 TCGA-06-5416-01 15 44783152 44783152 G T CTDSPL2 Nonsense_Mutation p.E216* 0.35 TCGA-06-5416-01 15 44816414 44816414 G T CTDSPL2 3'UTR 0.40 TCGA-06-5416-01 15 45007713 45007713 G A B2M Missense_Mutation p.D54N 0.38 tolerated(0.14) benign(0.005) TCGA-06-5416-01 15 45059625 45059625 G T TRIM69 Missense_Mutation p.K386N 0.40 tolerated(0.68) benign(0.01) TCGA-06-5416-01 15 45390223 45390223 G T DUOX2 Missense_Mutation p.F1183L 0.30 tolerated(0.1) probably_damaging(0.996) TCGA-06-5416-01 15 45391947 45391947 G A DUOX2 Nonsense_Mutation p.R1110* 0.40 TCGA-06-5416-01 15 45431792 45431792 G A DUOX1 Missense_Mutation p.D462N 0.11 tolerated(0.25) benign(0) TCGA-06-5416-01 15 45437125 45437125 G A DUOX1 Silent p.Q723Q 0.39 TCGA-06-5416-01 15 45457218 45457218 T A DUOX1 3'UTR 0.12 TCGA-06-5416-01 15 45713332 45713332 C T SPATA5L1 Missense_Mutation p.S729L 0.25 deleterious(0.01) probably_damaging(0.981) TCGA-06-5416-01 15 48591472 48591472 G T SLC12A1 Missense_Mutation p.K1032N 0.36 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 15 48634352 48634352 T A DUT 3'UTR 0.33 TCGA-06-5416-01 15 48703089 48703089 G T FBN1 3'UTR 0.36 TCGA-06-5416-01 15 48707956 48707956 C T FBN1 Missense_Mutation p.E2610K 0.33 probably_damaging(0.998) TCGA-06-5416-01 15 48719780 48719780 G T FBN1 Missense_Mutation p.F2396L 0.41 benign(0.101) TCGA-06-5416-01 15 48760156 48760156 T C FBN1 Missense_Mutation p.M1576V 0.39 benign(0.001) TCGA-06-5416-01 15 48782269 48782269 C T FBN1 Missense_Mutation p.R954H 0.46 probably_damaging(0.998) TCGA-06-5416-01 15 48902987 48902987 G A FBN1 Missense_Mutation p.S95L 0.11 probably_damaging(0.968) TCGA-06-5416-01 15 49304889 49304889 C A SECISBP2L Nonsense_Mutation p.E563* 0.26 TCGA-06-5416-01 15 49304929 49304929 A G SECISBP2L Silent p.N549N 0.32 TCGA-06-5416-01 15 49620745 49620745 G A FAM227B 3'UTR 0.30 TCGA-06-5416-01 15 49907396 49907396 G T FAM227B 5'UTR 0.36 TCGA-06-5416-01 15 50158552 50158552 G A ATP8B4 Missense_Mutation p.P1053S 0.44 tolerated(0.32) benign(0.063) TCGA-06-5416-01 15 50168639 50168639 A G ATP8B4 Missense_Mutation p.F955L 0.38 deleterious(0.03) probably_damaging(0.986) TCGA-06-5416-01 15 50474661 50474661 C A SLC27A2 Missense_Mutation p.L13M 0.38 deleterious(0.05) probably_damaging(0.949) TCGA-06-5416-01 15 50555517 50555517 C T HDC Missense_Mutation p.R40Q 0.34 deleterious(0.04) possibly_damaging(0.734) TCGA-06-5416-01 15 50831018 50831018 C T USP50 Missense_Mutation p.A231T 0.36 tolerated(1) benign(0.001) TCGA-06-5416-01 15 50885830 50885830 G A TRPM7 Missense_Mutation p.R1198C 0.36 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 15 50891328 50891328 C A TRPM7 Nonsense_Mutation p.E1052* 0.38 TCGA-06-5416-01 15 50935607 50935607 C T TRPM7 Silent p.L155L 0.35 TCGA-06-5416-01 15 50999946 50999946 G A SPPL2A 3'UTR 0.32 TCGA-06-5416-01 15 51289635 51289635 C T AP4E1 Missense_Mutation p.S820F 0.33 tolerated(0.3) benign(0.287) TCGA-06-5416-01 15 51291317 51291317 A G AP4E1 Missense_Mutation p.T985A 0.31 tolerated(0.17) benign(0.061) TCGA-06-5416-01 15 51350306 51350306 G A TNFAIP8L3 Silent p.F217F 0.27 TCGA-06-5416-01 15 51503150 51503150 C A CYP19A1 Missense_Mutation p.R456I 0.44 deleterious(0.02) possibly_damaging(0.526) TCGA-06-5416-01 15 51510759 51510759 T A CYP19A1 Missense_Mutation p.Y241F 0.42 tolerated(0.07) possibly_damaging(0.673) TCGA-06-5416-01 15 51773122 51773122 C T DMXL2 Missense_Mutation p.G2061S 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 51773472 51773472 C T DMXL2 Missense_Mutation p.G1944D 0.40 tolerated(0.33) benign(0.004) TCGA-06-5416-01 15 51773486 51773486 T C DMXL2 Silent p.K1939K 0.39 TCGA-06-5416-01 15 51790932 51790932 T G DMXL2 Missense_Mutation p.N1497H 0.39 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 15 51791231 51791231 C T DMXL2 Missense_Mutation p.R1397Q 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 15 51791735 51791735 C A DMXL2 Missense_Mutation p.R1229I 0.41 deleterious(0) possibly_damaging(0.908) TCGA-06-5416-01 15 51791997 51791997 C T DMXL2 Missense_Mutation p.D1142N 0.41 tolerated(0.09) probably_damaging(0.999) TCGA-06-5416-01 15 51830604 51830604 C T DMXL2 Missense_Mutation p.G384E 0.44 tolerated(0.34) benign(0.415) TCGA-06-5416-01 15 52155109 52155109 G T TMOD3 Nonsense_Mutation p.E10* 0.36 TCGA-06-5416-01 15 52254661 52254661 C T LEO1 Missense_Mutation p.E282K 0.37 deleterious(0) benign(0.427) TCGA-06-5416-01 15 52258220 52258220 G A LEO1 Silent p.D180D 0.05 TCGA-06-5416-01 15 52258551 52258551 C A LEO1 Missense_Mutation p.G70V 0.34 tolerated_low_confidence(0.12) benign(0.007) TCGA-06-5416-01 15 52353558 52353558 G A MAPK6 Missense_Mutation p.A310T 0.36 deleterious(0) benign(0.14) TCGA-06-5416-01 15 52356618 52356618 C A MAPK6 Silent p.S529S 0.29 TCGA-06-5416-01 15 52402098 52402098 G T BCL2L10 Missense_Mutation p.L188M 0.45 tolerated(0.13) benign(0.36) TCGA-06-5416-01 15 52532038 52532038 G A MYO5C Silent p.Y865Y 0.31 TCGA-06-5416-01 15 52545653 52545653 T C MYO5C Missense_Mutation p.H466R 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 52553182 52553182 G A MYO5C Missense_Mutation p.A397V 0.33 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 15 52553197 52553197 G T MYO5C Missense_Mutation p.P392H 0.46 tolerated(0.12) benign(0.409) TCGA-06-5416-01 15 52567783 52567783 G A MYO5C Silent p.V194V 0.35 TCGA-06-5416-01 15 52664542 52664542 C T MYO5A Missense_Mutation p.A866T 0.40 deleterious(0) possibly_damaging(0.582) TCGA-06-5416-01 15 52718114 52718114 A C MYO5A Missense_Mutation p.I123S 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 52892364 52892364 G T FAM214A Missense_Mutation p.A870D 0.46 deleterious(0) possibly_damaging(0.903) TCGA-06-5416-01 15 52901775 52901775 G A FAM214A Nonsense_Mutation p.R446* 0.38 TCGA-06-5416-01 15 53082106 53082106 G A ONECUT1 5'UTR 0.32 TCGA-06-5416-01 15 53998203 53998203 G T WDR72 Missense_Mutation p.F341L 0.30 deleterious(0.04) possibly_damaging(0.826) TCGA-06-5416-01 15 54306072 54306072 A G UNC13C Silent p.L324L 0.29 TCGA-06-5416-01 15 55742455 55742455 C A DYX1C1 Missense_Mutation p.A250S 0.27 deleterious(0.05) probably_damaging(0.987) TCGA-06-5416-01 15 55930846 55930846 G T PRTG Missense_Mutation p.L785I 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 15 56161854 56161854 G T NEDD4 Intron 0.31 TCGA-06-5416-01 15 56735696 56735696 C A MNS1 Missense_Mutation p.D315Y 0.32 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 15 56974663 56974663 C A ZNF280D Missense_Mutation p.D265Y 0.42 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 15 56981642 56981642 T C ZNF280D Missense_Mutation p.K176E 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-06-5416-01 15 57731521 57731521 C T CGNL1 Missense_Mutation p.R442C 0.49 deleterious(0.05) benign(0.015) TCGA-06-5416-01 15 57744441 57744441 C T CGNL1 Nonsense_Mutation p.Q670* 0.28 TCGA-06-5416-01 15 57976796 57976796 G A GCOM1 Intron 0.48 TCGA-06-5416-01 15 58253455 58253455 G A ALDH1A2 Missense_Mutation p.T430M 0.52 deleterious(0.01) probably_damaging(0.942) TCGA-06-5416-01 15 58256246 58256246 G A ALDH1A2 Missense_Mutation p.A308V 0.36 deleterious(0.01) benign(0.396) TCGA-06-5416-01 15 58476274 58476274 C A AQP9 Silent p.V276V 0.40 TCGA-06-5416-01 15 58830555 58830555 G T LIPC Missense_Mutation p.A38S 0.53 tolerated(0.5) benign(0.232) TCGA-06-5416-01 15 58971457 58971457 C T ADAM10 Missense_Mutation p.G117E 0.25 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 15 59224604 59224604 T C SLTM Silent p.E67E 0.44 TCGA-06-5416-01 15 59323116 59323116 G A RNF111 Missense_Mutation p.S32N 0.42 tolerated_low_confidence(0.59) benign(0.003) TCGA-06-5416-01 15 59373382 59373382 G A RNF111 Silent p.S732S 0.42 TCGA-06-5416-01 15 59429626 59429626 G A MYO1E Nonsense_Mutation p.R1094* 0.44 TCGA-06-5416-01 15 59750748 59750748 G T FAM81A Splice_Site 0.47 TCGA-06-5416-01 15 59911092 59911092 C A GCNT3 Missense_Mutation p.P219T 0.38 tolerated(0.24) possibly_damaging(0.474) TCGA-06-5416-01 15 60297532 60297532 G A FOXB1 Missense_Mutation p.D124N 0.62 tolerated(0.13) benign(0.073) TCGA-06-5416-01 15 60297702 60297702 C G FOXB1 Nonsense_Mutation p.Y180* 0.42 TCGA-06-5416-01 15 60648186 60648186 C T ANXA2 Missense_Mutation p.D172N 0.42 deleterious(0.01) benign(0.006) TCGA-06-5416-01 15 60720769 60720769 G A NARG2 Silent p.C893C 0.07 TCGA-06-5416-01 15 60728419 60728419 G A NARG2 Silent p.I811I 0.48 TCGA-06-5416-01 15 60803574 60803574 T C RORA Missense_Mutation p.D257G 0.40 tolerated(0.45) benign(0.005) TCGA-06-5416-01 15 62165501 62165501 G A VPS13C Nonsense_Mutation p.R3508* 0.46 TCGA-06-5416-01 15 62256973 62256973 C A VPS13C Missense_Mutation p.D1047Y 0.35 deleterious(0.02) benign(0.058) TCGA-06-5416-01 15 62312723 62312723 C T VPS13C Silent p.K213K 0.42 TCGA-06-5416-01 15 62325718 62325718 C A VPS13C Nonsense_Mutation p.E103* 0.39 TCGA-06-5416-01 15 62942295 62942295 G A TLN2 Missense_Mutation p.G50E 0.41 deleterious(0) possibly_damaging(0.882) TCGA-06-5416-01 15 63058570 63058570 C T TLN2 Silent p.I1715I 0.35 TCGA-06-5416-01 15 63351784 63351784 C T TPM1 Nonsense_Mutation p.R133* 0.40 TCGA-06-5416-01 15 63638872 63638872 G A CA12 Missense_Mutation p.P48L 0.43 deleterious(0.01) benign(0.336) TCGA-06-5416-01 15 63880434 63880435 - T USP3 Intron 0.32 TCGA-06-5416-01 15 63918298 63918298 C T HERC1 Silent p.G4387G 0.33 TCGA-06-5416-01 15 64017694 64017694 T C HERC1 Missense_Mutation p.D1122G 0.49 benign(0.001) TCGA-06-5416-01 15 64404773 64404773 G A SNX1 Missense_Mutation p.S54N 0.37 tolerated_low_confidence(0.19) benign(0.008) TCGA-06-5416-01 15 64418385 64418385 C T SNX1 Silent p.F206F 0.37 TCGA-06-5416-01 15 64495329 64495329 G A CSNK1G1 Silent p.S353S 0.45 TCGA-06-5416-01 15 64496756 64496756 G A CSNK1G1 Nonsense_Mutation p.R295* 0.36 TCGA-06-5416-01 15 65343915 65343915 C T SLC51B Missense_Mutation p.L54F 0.24 deleterious(0.04) benign(0.221) TCGA-06-5416-01 15 65443065 65443065 G T CLPX 3'UTR 0.45 TCGA-06-5416-01 15 65490735 65490735 C T CILP Missense_Mutation p.R630Q 0.44 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 15 65553225 65553225 C A PARP16 Missense_Mutation p.K277N 0.40 tolerated(0.15) benign(0.007) TCGA-06-5416-01 15 65897503 65897503 G A VWA9 Silent p.I41I 0.40 TCGA-06-5416-01 15 65956933 65956933 C T DENND4A Silent p.E1828E 0.36 TCGA-06-5416-01 15 65983832 65983832 G T DENND4A Missense_Mutation p.L1033I 0.36 tolerated(0.26) benign(0.017) TCGA-06-5416-01 15 66031165 66031165 G A DENND4A Missense_Mutation p.P227L 0.47 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 15 66161934 66161934 G A RAB11A Missense_Mutation p.R4H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.507) TCGA-06-5416-01 15 66190182 66190182 G A MEGF11 3'UTR 0.49 TCGA-06-5416-01 15 66191139 66191139 C T MEGF11 Silent p.S967S 0.42 TCGA-06-5416-01 15 66606425 66606425 C T DIS3L Nonsense_Mutation p.R262* 0.20 TCGA-06-5416-01 15 67358666 67358666 G T SMAD3 Missense_Mutation p.Q58H 0.40 deleterious(0.02) probably_damaging(0.981) TCGA-06-5416-01 15 67664804 67664804 C T IQCH Missense_Mutation p.S370L 0.54 tolerated(0.18) benign(0.001) TCGA-06-5416-01 15 67923231 67923231 A G MAP2K5 Missense_Mutation p.Y184C 0.38 tolerated(0.13) possibly_damaging(0.799) TCGA-06-5416-01 15 68118710 68118710 G A SKOR1 Missense_Mutation p.D368N 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.766) TCGA-06-5416-01 15 68119421 68119421 C T SKOR1 Missense_Mutation p.P526S 0.35 tolerated_low_confidence(0.1) benign(0.136) TCGA-06-5416-01 15 68466082 68466082 C T PIAS1 Missense_Mutation p.R341W 0.36 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 15 68603410 68603410 C T ITGA11 Silent p.T1032T 0.18 TCGA-06-5416-01 15 68650824 68650824 T G ITGA11 Missense_Mutation p.K191T 0.56 deleterious(0.01) probably_damaging(0.966) TCGA-06-5416-01 15 69018346 69018346 C A CORO2B 3'UTR 0.26 TCGA-06-5416-01 15 69076813 69076813 C A ANP32A Missense_Mutation p.R150L 0.46 tolerated(0.22) possibly_damaging(0.462) TCGA-06-5416-01 15 69696241 69696241 G T PAQR5 3'UTR 0.37 TCGA-06-5416-01 15 69728973 69728973 C T KIF23 Silent p.N489N 0.40 TCGA-06-5416-01 15 70960264 70960264 G A UACA Missense_Mutation p.A920V 0.56 tolerated(0.13) benign(0.021) TCGA-06-5416-01 15 70961255 70961255 G A UACA Nonsense_Mutation p.R590* 0.39 TCGA-06-5416-01 15 71125422 71125422 C A LARP6 Missense_Mutation p.A149S 0.32 tolerated(0.3) possibly_damaging(0.474) TCGA-06-5416-01 15 71197036 71197036 G T LRRC49 Nonsense_Mutation p.E153* 0.36 TCGA-06-5416-01 15 71953003 71953003 C T THSD4 Silent p.R429R 0.41 TCGA-06-5416-01 15 72040833 72040833 A G THSD4 Missense_Mutation p.D772G 0.38 tolerated(0.2) benign(0.005) TCGA-06-5416-01 15 72119273 72119273 G A MYO9A Missense_Mutation p.S2432L 0.41 tolerated_low_confidence(0.26) benign(0.002) TCGA-06-5416-01 15 72190717 72190717 G A MYO9A Missense_Mutation p.A1376V 0.36 tolerated_low_confidence(0.29) benign(0.002) TCGA-06-5416-01 15 72190999 72190999 T A MYO9A Missense_Mutation p.Q1282L 0.34 deleterious_low_confidence(0) probably_damaging(0.968) TCGA-06-5416-01 15 72193542 72193542 A G MYO9A Missense_Mutation p.V1047A 0.35 deleterious(0.02) benign(0.04) TCGA-06-5416-01 15 72338095 72338095 C A MYO9A Missense_Mutation p.Q270H 0.32 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 15 72338556 72338556 G T MYO9A Missense_Mutation p.H117N 0.36 deleterious(0.04) benign(0.186) TCGA-06-5416-01 15 72459394 72459395 - T GRAMD2 Frame_Shift_Ins p.H138Tfs*34 0.25 TCGA-06-5416-01 15 72494866 72494866 G A PKM Intron 0.32 TCGA-06-5416-01 15 72553933 72553933 G A PARP6 Nonsense_Mutation p.R171* 0.45 TCGA-06-5416-01 15 72580947 72580947 G A CELF6 Missense_Mutation p.S369L 0.26 tolerated(0.11) benign(0.034) TCGA-06-5416-01 15 72873115 72873115 G A ARIH1 Missense_Mutation p.R420H 0.39 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 15 72958555 72958555 G T GOLGA6B Splice_Site p.X652_splice 0.36 TCGA-06-5416-01 15 72958576 72958576 G A GOLGA6B Missense_Mutation p.D659N 0.30 tolerated(0.15) probably_damaging(0.981) TCGA-06-5416-01 15 72968595 72968595 G A HIGD2B Missense_Mutation p.R41C 0.25 deleterious(0.04) benign(0.05) TCGA-06-5416-01 15 72968619 72968619 C A HIGD2B Nonsense_Mutation p.E33* 0.40 TCGA-06-5416-01 15 73545744 73545744 C T NEO1 Missense_Mutation p.P633L 0.41 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 15 73590704 73590704 C T NEO1 Missense_Mutation p.T1306I 0.31 tolerated(0.11) possibly_damaging(0.642) TCGA-06-5416-01 15 73617458 73617458 A G HCN4 Missense_Mutation p.S606P 0.44 deleterious(0.01) unknown(0) TCGA-06-5416-01 15 73635841 73635841 G A HCN4 Missense_Mutation p.S365L 0.45 deleterious(0) unknown(0) TCGA-06-5416-01 15 73889392 73889392 C T NPTN Missense_Mutation p.R137Q 0.38 deleterious(0.02) probably_damaging(0.944) TCGA-06-5416-01 15 74000768 74000768 C T CD276 Silent p.F486F 0.29 TCGA-06-5416-01 15 74238808 74238808 G A LOXL1 Missense_Mutation p.R421H 0.28 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 15 74276377 74276377 C T STOML1 Silent p.E366E 0.49 TCGA-06-5416-01 15 74290522 74290522 G A PML Missense_Mutation p.A103T 0.37 tolerated(0.32) benign(0.283) TCGA-06-5416-01 15 74328271 74328271 C T PML Intron 0.39 TCGA-06-5416-01 15 74363246 74363246 T C GOLGA6A 3'UTR 0.16 TCGA-06-5416-01 15 74363344 74363344 C A GOLGA6A Missense_Mutation p.E663D 0.11 deleterious(0.01) possibly_damaging(0.478) TCGA-06-5416-01 15 74363714 74363714 C A GOLGA6A Missense_Mutation p.E598D 0.14 tolerated(0.11) possibly_damaging(0.544) TCGA-06-5416-01 15 74364622 74364622 C T GOLGA6A Silent p.E510E 0.10 TCGA-06-5416-01 15 74365016 74365016 C A GOLGA6A Intron 0.14 TCGA-06-5416-01 15 74367160 74367160 C T GOLGA6A Missense_Mutation p.E344K 0.19 deleterious(0.04) benign(0.011) TCGA-06-5416-01 15 74425733 74425733 C T ISLR2 Missense_Mutation p.S213L 0.37 tolerated(0.26) benign(0.148) TCGA-06-5416-01 15 74467246 74467246 C A ISLR Missense_Mutation p.A16D 0.37 deleterious(0.01) benign(0.032) TCGA-06-5416-01 15 74474759 74474759 G A STRA6 Missense_Mutation p.A487V 0.41 tolerated(0.77) benign(0.012) TCGA-06-5416-01 15 74476307 74476307 C T STRA6 Missense_Mutation p.R436Q 0.46 tolerated(0.28) probably_damaging(0.988) TCGA-06-5416-01 15 74636323 74636323 G A CYP11A1 Silent p.N212N 0.42 TCGA-06-5416-01 15 74914482 74914482 C T CLK3 Missense_Mutation p.R279C 0.35 deleterious(0.03) benign(0.003) TCGA-06-5416-01 15 75014761 75014761 C A CYP1A1 Missense_Mutation p.E226D 0.34 tolerated(0.23) benign(0.017) TCGA-06-5416-01 15 75042103 75042103 C A CYP1A2 Silent p.P8P 0.37 TCGA-06-5416-01 15 75043550 75043550 G A CYP1A2 Silent p.T284T 0.36 TCGA-06-5416-01 15 75047255 75047255 C T CYP1A2 Silent p.I459I 0.30 TCGA-06-5416-01 15 75105251 75105251 A G LMAN1L Missense_Mutation p.D19G 0.39 tolerated(0.41) benign(0) TCGA-06-5416-01 15 75105351 75105351 C A LMAN1L Silent p.P52P 0.46 TCGA-06-5416-01 15 75500723 75500723 T G C15orf39 Missense_Mutation p.I778M 0.38 deleterious(0) probably_damaging(0.963) TCGA-06-5416-01 15 75580623 75580623 G A GOLGA6D Missense_Mutation p.R161H 0.67 tolerated(0.09) benign(0) TCGA-06-5416-01 15 75586256 75586256 G A GOLGA6D Missense_Mutation p.R566K 0.12 tolerated(0.67) benign(0.061) TCGA-06-5416-01 15 75644466 75644466 G A NEIL1 Missense_Mutation p.R150Q 0.45 tolerated(0.14) benign(0.004) TCGA-06-5416-01 15 75648172 75648172 C T MAN2C1 3'UTR 0.18 TCGA-06-5416-01 15 75763125 75763125 C T PTPN9 Missense_Mutation p.E419K 0.40 deleterious(0.02) benign(0.103) TCGA-06-5416-01 15 75931994 75931994 C A IMP3 Missense_Mutation p.E172D 0.07 tolerated(0.11) benign(0.002) TCGA-06-5416-01 15 75941569 75941569 G T SNX33 Missense_Mutation p.Q42H 0.54 tolerated(0.08) possibly_damaging(0.504) TCGA-06-5416-01 15 75942735 75942735 A G SNX33 Missense_Mutation p.D431G 0.33 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 15 75985498 75985498 G T CSPG4 Missense_Mutation p.F55L 0.48 tolerated(0.27) benign(0.075) TCGA-06-5416-01 15 76018497 76018497 C T ODF3L1 Missense_Mutation p.R110C 0.20 deleterious(0.01) probably_damaging(0.977) TCGA-06-5416-01 15 76075458 76075458 G A RN7SL319P 5'Flank 0.39 TCGA-06-5416-01 15 76168599 76168599 G T UBE2Q2 Missense_Mutation p.Q220H 0.54 deleterious(0.03) possibly_damaging(0.5) TCGA-06-5416-01 15 76168612 76168612 G A UBE2Q2 Missense_Mutation p.G225R 0.29 deleterious(0.04) benign(0.131) TCGA-06-5416-01 15 76189395 76189395 G T UBE2Q2 Missense_Mutation p.E363D 0.31 deleterious(0.01) probably_damaging(0.973) TCGA-06-5416-01 15 76222353 76222353 G T FBXO22 Missense_Mutation p.G253C 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 76235870 76235870 G A NRG4 3'UTR 0.29 TCGA-06-5416-01 15 76646383 76646383 G A SCAPER Silent p.F1318F 0.34 TCGA-06-5416-01 15 76995222 76995222 C T SCAPER Missense_Mutation p.R790K 0.31 tolerated(0.32) probably_damaging(0.997) TCGA-06-5416-01 15 77021074 77021074 C T SCAPER Missense_Mutation p.R676H 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 77236121 77236121 G A RCN2 Missense_Mutation p.R157Q 0.49 deleterious(0.01) probably_damaging(0.98) TCGA-06-5416-01 15 77406998 77406998 T G PEAK1 Missense_Mutation p.I1581L 0.29 tolerated(0.23) probably_damaging(0.997) TCGA-06-5416-01 15 77471176 77471176 C A PEAK1 Missense_Mutation p.K1031N 0.33 tolerated(0.28) benign(0.081) TCGA-06-5416-01 15 77471982 77471982 C A PEAK1 Missense_Mutation p.A763S 0.41 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 15 77906592 77906592 C T LINGO1 Missense_Mutation p.D553N 0.38 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 15 77906832 77906832 G A LINGO1 Missense_Mutation p.R473W 0.58 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 78211524 78211524 G T RP11-114H24.7 Intron 0.33 TCGA-06-5416-01 15 78212415 78212415 G A RP11-114H24.7 Intron 0.33 TCGA-06-5416-01 15 78403610 78403610 G A CIB2 Missense_Mutation p.S32L 0.31 deleterious(0.05) benign(0.079) TCGA-06-5416-01 15 78466738 78466738 G A ACSBG1 Missense_Mutation p.L611F 0.37 deleterious(0.01) probably_damaging(0.946) TCGA-06-5416-01 15 78471053 78471053 C A ACSBG1 Missense_Mutation p.K535N 0.28 deleterious(0.02) probably_damaging(0.952) TCGA-06-5416-01 15 78572831 78572831 G A DNAJA4 3'UTR 0.44 TCGA-06-5416-01 15 78755377 78755377 A C IREB2 Missense_Mutation p.S74R 0.32 tolerated(0.24) benign(0.004) TCGA-06-5416-01 15 78893757 78893757 C T CHRNA3 Silent p.R409R 0.31 TCGA-06-5416-01 15 78894430 78894430 G A CHRNA3 Missense_Mutation p.A185V 0.36 deleterious(0.04) benign(0.19) TCGA-06-5416-01 15 78921795 78921795 G A CHRNB4 Silent p.I284I 0.42 TCGA-06-5416-01 15 79054874 79054874 G A ADAMTS7 Missense_Mutation p.R1592C 0.52 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 79187202 79187202 G T MORF4L1 Missense_Mutation p.E320D 0.32 tolerated(0.16) benign(0.043) TCGA-06-5416-01 15 79317730 79317730 G A RASGRF1 Nonsense_Mutation p.R490* 0.40 TCGA-06-5416-01 15 79324609 79324609 G A RASGRF1 Silent p.F336F 0.33 TCGA-06-5416-01 15 79749079 79749079 C T KIAA1024 Missense_Mutation p.A197V 0.46 tolerated(0.67) benign(0.005) TCGA-06-5416-01 15 79749814 79749814 C T KIAA1024 Missense_Mutation p.S442F 0.32 deleterious(0.01) possibly_damaging(0.681) TCGA-06-5416-01 15 80215111 80215111 C A ST20-MTHFS Intron 0.48 TCGA-06-5416-01 15 80423595 80423595 G A ZFAND6 Silent p.K146K 0.40 TCGA-06-5416-01 15 80450269 80450269 C A FAH Intron 0.36 TCGA-06-5416-01 15 80450424 80450424 C T FAH Missense_Mutation p.A35V 0.35 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 15 80465480 80465480 G A FAH Silent p.P277P 0.39 TCGA-06-5416-01 15 80762562 80762562 G T ARNT2 Missense_Mutation p.E66D 0.41 deleterious(0) possibly_damaging(0.523) TCGA-06-5416-01 15 80889588 80889588 C T ARNT2 3'UTR 0.43 TCGA-06-5416-01 15 81173262 81173262 G A KIAA1199 Silent p.P134P 0.40 TCGA-06-5416-01 15 81173291 81173291 G T KIAA1199 Missense_Mutation p.G144V 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 81181098 81181098 G A KIAA1199 Missense_Mutation p.E309K 0.49 tolerated(0.17) probably_damaging(0.998) TCGA-06-5416-01 15 81213395 81213395 G A KIAA1199 Missense_Mutation p.A676T 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 15 81214402 81214402 G A KIAA1199 Missense_Mutation p.G709E 0.35 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 15 81295609 81295609 G A MESDC1 Missense_Mutation p.V333M 0.32 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 15 81584911 81584911 G A IL16 Missense_Mutation p.E479K 0.46 deleterious(0.01) probably_damaging(0.962) TCGA-06-5416-01 15 81592598 81592598 G A IL16 Silent p.T977T 0.40 TCGA-06-5416-01 15 81595911 81595911 A G IL16 Missense_Mutation p.T1114A 0.39 deleterious(0.01) probably_damaging(0.95) TCGA-06-5416-01 15 81601198 81601198 G A IL16 3'Flank 0.46 TCGA-06-5416-01 15 81615241 81615241 G T STARD5 Missense_Mutation p.L50M 0.43 deleterious(0.02) probably_damaging(0.99) TCGA-06-5416-01 15 81631756 81631756 G T TMC3 Missense_Mutation p.S645Y 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 81650596 81650596 A C TMC3 Missense_Mutation p.Y213D 0.39 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 15 82335584 82335584 C T MEX3B Missense_Mutation p.A543T 0.37 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 15 83345354 83345354 G A AP3B2 Silent p.I508I 0.33 TCGA-06-5416-01 15 83428074 83428074 G A FSD2 3'UTR 0.27 TCGA-06-5416-01 15 83674367 83674368 - T C15orf40 Intron 0.39 TCGA-06-5416-01 15 83805407 83805407 G T TM6SF1 Nonsense_Mutation p.E366* 0.49 TCGA-06-5416-01 15 83932358 83932358 C A BNC1 Nonsense_Mutation p.E549* 0.42 TCGA-06-5416-01 15 83932396 83932396 T C BNC1 Missense_Mutation p.K536R 0.42 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 15 84442366 84442366 G A ADAMTSL3 Missense_Mutation p.G94E 0.45 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 15 84705678 84705678 A G ADAMTSL3 Silent p.R1636R 0.35 TCGA-06-5416-01 15 85164531 85164531 G A ZSCAN2 Missense_Mutation p.E369K 0.41 tolerated(1) probably_damaging(0.997) TCGA-06-5416-01 15 85165219 85165219 G T ZSCAN2 Missense_Mutation p.S598I 0.34 deleterious(0.04) probably_damaging(0.991) TCGA-06-5416-01 15 85188937 85188937 G A WDR73 Silent p.S216S 0.43 TCGA-06-5416-01 15 85230952 85230952 C T SEC11A Missense_Mutation p.R72Q 0.41 tolerated(0.29) benign(0.115) TCGA-06-5416-01 15 85327516 85327516 C A ZNF592 Nonsense_Mutation p.S537* 0.40 TCGA-06-5416-01 15 85360357 85360357 G A ALPK3 Missense_Mutation p.A94T 0.40 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-06-5416-01 15 85400264 85400264 C T ALPK3 Silent p.F967F 0.43 TCGA-06-5416-01 15 85406782 85406782 G T ALPK3 Splice_Site p.X1673_splice 0.26 TCGA-06-5416-01 15 85411390 85411390 C T ALPK3 Silent p.F1809F 0.34 TCGA-06-5416-01 15 85610269 85610269 G T PDE8A Missense_Mutation p.D90Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 15 85641218 85641218 G A PDE8A Missense_Mutation p.D298N 0.20 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 15 85666311 85666311 C T PDE8A Missense_Mutation p.R658C 0.38 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 15 86123527 86123527 G A AKAP13 Missense_Mutation p.R743Q 0.31 deleterious_low_confidence(0.02) benign(0.057) TCGA-06-5416-01 15 86189096 86189096 A C AKAP13 Missense_Mutation p.K1429Q 0.39 tolerated(0.08) benign(0.063) TCGA-06-5416-01 15 86286920 86286920 G A AKAP13 Silent p.Q2756Q 0.36 TCGA-06-5416-01 15 86287878 86287878 A G AKAP13 Silent p.V2808V 0.33 TCGA-06-5416-01 15 86311833 86311833 G A KLHL25 Silent p.F403F 0.34 TCGA-06-5416-01 15 86313046 86313046 C T KLHL25 5'UTR 0.34 TCGA-06-5416-01 15 86791089 86791089 G T AGBL1 Missense_Mutation p.E192D 0.38 tolerated(0.07) probably_damaging(0.955) TCGA-06-5416-01 15 88483979 88483979 G A NTRK3 Nonsense_Mutation p.Q531* 0.40 TCGA-06-5416-01 15 88670452 88670452 C T NTRK3 Missense_Mutation p.E412K 0.31 tolerated(0.62) benign(0.004) TCGA-06-5416-01 15 88679798 88679798 C T NTRK3 Missense_Mutation p.R222Q 0.57 tolerated(0.61) benign(0.004) TCGA-06-5416-01 15 88726667 88726667 T C NTRK3 Missense_Mutation p.N126S 0.39 tolerated(0.09) probably_damaging(0.983) TCGA-06-5416-01 15 89151405 89151405 C T MIR1179 RNA 0.41 TCGA-06-5416-01 15 89182676 89182676 C T ISG20 Missense_Mutation p.R27C 0.50 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 15 89198840 89198840 A G ISG20 3'UTR 0.40 TCGA-06-5416-01 15 89399058 89399058 C T ACAN Missense_Mutation p.A1081V 0.71 tolerated(0.39) unknown(0) TCGA-06-5416-01 15 89400590 89400590 G T ACAN Nonsense_Mutation p.G1592* 0.44 TCGA-06-5416-01 15 89402162 89402162 G A ACAN Missense_Mutation p.A2116T 0.35 tolerated(0.78) benign(0.184) TCGA-06-5416-01 15 89731505 89731505 C T ABHD2 Silent p.S299S 0.29 TCGA-06-5416-01 15 89849322 89849322 T A FANCI Missense_Mutation p.F1145Y 0.40 tolerated(0.14) benign(0.029) TCGA-06-5416-01 15 89862185 89862185 C T POLG Missense_Mutation p.E1084K 0.30 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 15 90167150 90167150 G A TICRR Silent p.P1203P 0.41 TCGA-06-5416-01 15 90176934 90176934 G A KIF7 Missense_Mutation p.R859W 0.43 deleterious(0.03) probably_damaging(0.981) TCGA-06-5416-01 15 90212791 90212791 C A PLIN1 Missense_Mutation p.M237I 0.51 tolerated(0.24) benign(0.016) TCGA-06-5416-01 15 90293226 90293226 G A MESP1 3'UTR 0.50 TCGA-06-5416-01 15 90320390 90320390 G A MESP2 Missense_Mutation p.D268N 0.30 tolerated(0.19) benign(0.002) TCGA-06-5416-01 15 90328441 90328441 G A ANPEP 3'UTR 0.35 TCGA-06-5416-01 15 90344784 90344784 G A ANPEP Missense_Mutation p.R542C 0.43 deleterious(0.04) benign(0.022) TCGA-06-5416-01 15 90349569 90349569 G A ANPEP Silent p.P82P 0.41 TCGA-06-5416-01 15 90628263 90628263 C A IDH2 Missense_Mutation p.G383V 0.30 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 15 90630733 90630733 C A IDH2 Missense_Mutation p.K251N 0.31 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-06-5416-01 15 90760700 90760700 G A SEMA4B Missense_Mutation p.E63K 0.31 tolerated(0.44) benign(0.024) TCGA-06-5416-01 15 90770819 90770819 C T SEMA4B Silent p.S573S 0.43 TCGA-06-5416-01 15 90770838 90770838 G A SEMA4B Missense_Mutation p.A580T 0.39 tolerated(0.64) benign(0.001) TCGA-06-5416-01 15 90800929 90800929 C T TTLL13 Missense_Mutation p.R304W 0.41 deleterious(0.03) benign(0.013) TCGA-06-5416-01 15 90904631 90904631 C A ZNF774 3'UTR 0.43 TCGA-06-5416-01 15 90997705 90997705 G T IQGAP1 Missense_Mutation p.E511D 0.35 tolerated(0.23) benign(0.036) TCGA-06-5416-01 15 91016989 91016989 C T IQGAP1 Missense_Mutation p.R798W 0.36 deleterious(0.01) possibly_damaging(0.449) TCGA-06-5416-01 15 91292798 91292798 G T BLM Missense_Mutation p.Q100H 0.37 tolerated(0.28) benign(0.003) TCGA-06-5416-01 15 91306223 91306223 G T BLM Missense_Mutation p.R637I 0.50 deleterious(0.01) benign(0.14) TCGA-06-5416-01 15 91312714 91312714 G A BLM Missense_Mutation p.R818H 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 15 91424918 91424918 T C FURIN Missense_Mutation p.V732A 0.43 deleterious(0.02) benign(0.251) TCGA-06-5416-01 15 91432664 91432664 G A FES Missense_Mutation p.R266Q 0.39 tolerated(1) benign(0.001) TCGA-06-5416-01 15 91436545 91436545 G A FES Missense_Mutation p.R649H 0.28 deleterious(0) possibly_damaging(0.898) TCGA-06-5416-01 15 91450665 91450665 G A MAN2A2 Missense_Mutation p.R379H 0.40 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 15 91455850 91455850 G T MAN2A2 Missense_Mutation p.D809Y 0.38 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 15 91478788 91478788 G T UNC45A Missense_Mutation p.E22D 0.10 tolerated(0.36) benign(0.077) TCGA-06-5416-01 15 91542990 91542990 G A VPS33B Missense_Mutation p.S564F 0.14 deleterious(0.05) possibly_damaging(0.701) TCGA-06-5416-01 15 92459554 92459554 C T SLCO3A1 Missense_Mutation p.T171M 0.44 tolerated(0.1) possibly_damaging(0.817) TCGA-06-5416-01 15 92981673 92981673 C T ST8SIA2 Silent p.F127F 0.41 TCGA-06-5416-01 15 92981753 92981753 T G ST8SIA2 Missense_Mutation p.F154C 0.44 probably_damaging(0.992) TCGA-06-5416-01 15 93007572 93007572 G T ST8SIA2 Missense_Mutation p.G362V 0.32 probably_damaging(0.998) TCGA-06-5416-01 15 93015314 93015314 C T C15orf32 5'UTR 0.50 TCGA-06-5416-01 15 93015661 93015661 T G C15orf32 Missense_Mutation p.L95V 0.38 deleterious_low_confidence(0) benign(0.044) TCGA-06-5416-01 15 93470539 93470539 G A CHD2 Silent p.S120S 0.45 TCGA-06-5416-01 15 93486285 93486285 G A CHD2 Missense_Mutation p.E347K 0.42 deleterious(0.01) benign(0.409) TCGA-06-5416-01 15 93492441 93492441 G A CHD2 Intron 0.33 TCGA-06-5416-01 15 93510575 93510575 T A CHD2 Missense_Mutation p.F674Y 0.44 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 15 93545466 93545466 G A CHD2 Silent p.E1399E 0.36 TCGA-06-5416-01 15 93595373 93595373 G T RGMA Silent p.L173L 0.30 TCGA-06-5416-01 15 94858840 94858840 G A MCTP2 Missense_Mutation p.R204Q 0.41 tolerated(0.2) benign(0.097) TCGA-06-5416-01 15 94899458 94899458 G T MCTP2 Missense_Mutation p.K366N 0.45 deleterious(0.01) benign(0.061) TCGA-06-5416-01 15 94942283 94942283 T C MCTP2 Missense_Mutation p.Y628H 0.45 deleterious(0) possibly_damaging(0.818) TCGA-06-5416-01 15 96880659 96880659 C T NR2F2 Silent p.S351S 0.13 TCGA-06-5416-01 15 97326892 97326892 C A SPATA8 Missense_Mutation p.P3T 0.32 tolerated_low_confidence(0.24) possibly_damaging(0.803) TCGA-06-5416-01 15 97328310 97328310 G T SPATA8 Missense_Mutation p.R94M 0.44 tolerated_low_confidence(0.09) possibly_damaging(0.702) TCGA-06-5416-01 15 99478095 99478095 C T IGF1R Missense_Mutation p.T1000I 0.26 deleterious(0.02) possibly_damaging(0.808) TCGA-06-5416-01 15 99512682 99512682 C T PGPEP1L Missense_Mutation p.D115N 0.42 deleterious(0.01) benign(0.089) TCGA-06-5416-01 15 99669634 99669634 C A SYNM Missense_Mutation p.L356I 0.39 tolerated(0.18) benign(0.035) TCGA-06-5416-01 15 99669832 99669832 A G SYNM Missense_Mutation p.T422A 0.39 tolerated(0.47) benign(0.02) TCGA-06-5416-01 15 99670211 99670211 C T SYNM Missense_Mutation p.A548V 0.41 tolerated(0.05) possibly_damaging(0.876) TCGA-06-5416-01 16 10032064 10032064 G T GRIN2A Missense_Mutation p.F253L 0.19 deleterious(0) benign(0.422) TCGA-06-5416-01 16 1004442 1004442 C T LMF1 Missense_Mutation p.V140I 0.20 tolerated(0.39) benign(0.021) TCGA-06-5416-01 16 1004665 1004665 G A LMF1 Silent p.F65F 0.31 TCGA-06-5416-01 16 10274249 10274249 C T GRIN2A Nonsense_Mutation p.W7* 0.20 TCGA-06-5416-01 16 10274272 10274272 C T GRIN2A 5'UTR 0.49 TCGA-06-5416-01 16 10788644 10788644 C T TEKT5 Silent p.A29A 0.40 TCGA-06-5416-01 16 10855263 10855263 C T NUBP1 Missense_Mutation p.R217C 0.43 deleterious(0) possibly_damaging(0.766) TCGA-06-5416-01 16 10868841 10868841 G T TVP23A Missense_Mutation p.L68I 0.27 deleterious(0.04) benign(0.075) TCGA-06-5416-01 16 10911962 10911962 G T TVP23A Silent p.I29I 0.18 TCGA-06-5416-01 16 10995381 10995381 G T CIITA Missense_Mutation p.E149D 0.36 tolerated(0.11) benign(0.012) TCGA-06-5416-01 16 10996518 10996518 C A CIITA Missense_Mutation p.P211H 0.19 deleterious(0.02) benign(0.021) TCGA-06-5416-01 16 11010223 11010223 G A CIITA Splice_Site p.X990_splice 0.20 TCGA-06-5416-01 16 11348906 11348906 A C SOCS1 Missense_Mutation p.F144V 0.15 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 16 11375148 11375148 A G PRM1 5'UTR 0.40 TCGA-06-5416-01 16 11846533 11846533 A G ZC3H7A Silent p.I906I 0.18 TCGA-06-5416-01 16 11933615 11933615 G T RSL1D1 Silent p.S361S 0.19 TCGA-06-5416-01 16 12096893 12096893 G A SNX29 Missense_Mutation p.D39N 0.24 deleterious(0) possibly_damaging(0.804) TCGA-06-5416-01 16 12140282 12140282 G T SNX29 Missense_Mutation p.R157M 0.19 deleterious(0.01) possibly_damaging(0.862) TCGA-06-5416-01 16 1257805 1257805 G T CACNA1H Missense_Mutation p.K1033N 0.21 tolerated(0.12) probably_damaging(0.996) TCGA-06-5416-01 16 1260615 1260615 C A CACNA1H Silent p.I1334I 0.40 TCGA-06-5416-01 16 1260889 1260889 G A CACNA1H Missense_Mutation p.V1381M 0.22 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 16 1261748 1261748 G T CACNA1H Missense_Mutation p.K1503N 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 1262130 1262130 G T CACNA1H Missense_Mutation p.R1584M 0.35 deleterious(0.03) possibly_damaging(0.553) TCGA-06-5416-01 16 1265364 1265364 G A CACNA1H Missense_Mutation p.R1721H 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 1271058 1271058 C T CACNA1H 3'UTR 0.54 TCGA-06-5416-01 16 12798725 12798725 G A CPPED1 Silent p.G157G 0.16 TCGA-06-5416-01 16 12798868 12798868 G A CPPED1 Nonsense_Mutation p.R110* 0.51 TCGA-06-5416-01 16 1306840 1306840 G T TPSD1 Missense_Mutation p.E99D 0.40 tolerated(0.27) probably_damaging(0.958) TCGA-06-5416-01 16 1308162 1308162 G T TPSD1 Missense_Mutation p.S208I 0.22 tolerated(0.21) possibly_damaging(0.752) TCGA-06-5416-01 16 14029554 14029554 C T ERCC4 Missense_Mutation p.R589W 0.48 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 1417147 1417147 C T UNKL Intron 0.68 TCGA-06-5416-01 16 142654 142654 C A NPRL3 Missense_Mutation p.K367N 0.31 tolerated(0.24) benign(0.39) TCGA-06-5416-01 16 14328058 14328058 A G MKL2 Missense_Mutation p.D250G 0.45 deleterious(0.02) possibly_damaging(0.709) TCGA-06-5416-01 16 1469958 1469958 G T C16orf91 Missense_Mutation p.L353I 0.18 deleterious_low_confidence(0) benign(0.008) TCGA-06-5416-01 16 1479262 1479262 C T C16orf91 Silent p.Q28Q 0.40 TCGA-06-5416-01 16 15026473 15026473 G A NPIPA1 5'Flank 0.12 TCGA-06-5416-01 16 1505234 1505234 G T CLCN7 Silent p.I333I 0.41 TCGA-06-5416-01 16 1505732 1505732 G A CLCN7 Silent p.I327I 0.33 TCGA-06-5416-01 16 15100369 15100369 T C PDXDC1 Missense_Mutation p.Y170H 0.06 tolerated(0.21) benign(0.072) TCGA-06-5416-01 16 15109989 15109989 C T PDXDC1 Missense_Mutation p.T244M 0.14 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 16 15204658 15204658 G T RP11-1186N24.5 RNA 0.49 TCGA-06-5416-01 16 1544473 1544473 G A TELO2 Missense_Mutation p.R64K 0.39 deleterious(0.03) benign(0.23) TCGA-06-5416-01 16 15677016 15677016 G A C16orf45 Silent p.E141E 0.41 TCGA-06-5416-01 16 1570723 1570723 G T IFT140 Silent p.S1180S 0.25 TCGA-06-5416-01 16 15729931 15729931 G A KIAA0430 Missense_Mutation p.S138L 0.42 deleterious_low_confidence(0.03) benign(0.126) TCGA-06-5416-01 16 15761142 15761142 G T NDE1 Splice_Site p.X28_splice 0.39 TCGA-06-5416-01 16 15818918 15818918 T C NDE1 3'UTR 0.18 TCGA-06-5416-01 16 15835621 15835621 G A MYH11 Missense_Mutation p.S890L 0.23 benign(0) TCGA-06-5416-01 16 16103639 16103639 G T ABCC1 Nonsense_Mutation p.G78* 0.23 TCGA-06-5416-01 16 1614109 1614109 G A IFT140 Silent p.F652F 0.40 TCGA-06-5416-01 16 1618300 1618300 G A IFT140 Missense_Mutation p.A563V 0.47 tolerated(0.27) benign(0.093) TCGA-06-5416-01 16 16205396 16205396 G A ABCC1 Silent p.T1012T 0.13 TCGA-06-5416-01 16 16228209 16228209 C T ABCC1 Silent p.V1323V 0.20 TCGA-06-5416-01 16 16253393 16253393 C A ABCC6 Missense_Mutation p.E1227D 0.16 deleterious(0.03) benign(0.435) TCGA-06-5416-01 16 16302676 16302676 C A ABCC6 Missense_Mutation p.D235Y 0.24 deleterious(0) probably_damaging(0.962) TCGA-06-5416-01 16 1634269 1634269 G A IFT140 Silent p.V436V 0.41 TCGA-06-5416-01 16 1634348 1634348 G A IFT140 Missense_Mutation p.S410L 0.18 tolerated(0.13) benign(0.046) TCGA-06-5416-01 16 17235201 17235201 G A XYLT1 Missense_Mutation p.R466W 0.27 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 17353184 17353184 G T XYLT1 Missense_Mutation p.L192I 0.43 tolerated_low_confidence(0.4) benign(0.027) TCGA-06-5416-01 16 1817164 1817164 C A MAPK8IP3 Missense_Mutation p.L1034M 0.37 deleterious(0) probably_damaging(0.938) TCGA-06-5416-01 16 1818615 1818615 G A MAPK8IP3 Missense_Mutation p.D1293N 0.38 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 16 18560883 18560883 C T NOMO2 Missense_Mutation p.E157K 0.55 tolerated(0.27) benign(0.013) TCGA-06-5416-01 16 1877992 1877992 C T FAHD1 Intron 0.23 TCGA-06-5416-01 16 18853706 18853706 G T SMG1 Missense_Mutation p.P2097Q 0.42 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 16 18866194 18866194 C T SMG1 Missense_Mutation p.E1423K 0.20 tolerated(0.4) probably_damaging(0.971) TCGA-06-5416-01 16 18872023 18872023 G T SMG1 Silent p.I1257I 0.19 TCGA-06-5416-01 16 18881223 18881223 G T SMG1 Missense_Mutation p.F862L 0.21 deleterious(0.01) probably_damaging(0.952) TCGA-06-5416-01 16 18887604 18887604 T C SMG1 Missense_Mutation p.N578D 0.45 tolerated(0.05) benign(0.01) TCGA-06-5416-01 16 18893522 18893522 G A SMG1 Missense_Mutation p.R420W 0.28 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 16 19033066 19033066 G A TMC7 Silent p.T192T 0.39 TCGA-06-5416-01 16 19126667 19126667 G A ITPRIPL2 Missense_Mutation p.R295H 0.25 deleterious(0.01) probably_damaging(0.964) TCGA-06-5416-01 16 19475127 19475127 G A TMC5 Silent p.S422S 0.21 TCGA-06-5416-01 16 19485572 19485572 G A TMC5 Silent p.R688R 0.22 TCGA-06-5416-01 16 19627466 19627466 G T C16orf62 Nonsense_Mutation p.E441* 0.18 TCGA-06-5416-01 16 19639972 19639972 G A C16orf62 Missense_Mutation p.R555Q 0.42 tolerated(0.14) benign(0.387) TCGA-06-5416-01 16 19718429 19718429 C T KNOP1 Missense_Mutation p.A394T 0.48 tolerated(0.07) benign(0.045) TCGA-06-5416-01 16 2000896 2000896 G A RPL3L Silent p.F150F 0.44 TCGA-06-5416-01 16 2028570 2028570 C A TBL3 Missense_Mutation p.L771I 0.21 tolerated(0.37) benign(0.168) TCGA-06-5416-01 16 2031202 2031202 G T NOXO1 5'Flank 0.26 TCGA-06-5416-01 16 2034815 2034815 T C GFER Missense_Mutation p.V109A 0.27 deleterious(0.01) benign(0.262) TCGA-06-5416-01 16 20355491 20355491 T C UMOD Missense_Mutation p.N396D 0.15 deleterious(0) possibly_damaging(0.908) TCGA-06-5416-01 16 20360485 20360485 G A UMOD Silent p.A46A 0.43 TCGA-06-5416-01 16 2036190 2036190 G T GFER 3'UTR 0.54 TCGA-06-5416-01 16 20362013 20362013 G A UMOD Missense_Mutation p.S16F 0.32 tolerated_low_confidence(0.41) benign(0.153) TCGA-06-5416-01 16 20386185 20386185 G A PDILT Missense_Mutation p.R214C 0.42 tolerated(0.05) benign(0.091) TCGA-06-5416-01 16 20410506 20410506 G A PDILT Silent p.I39I 0.37 TCGA-06-5416-01 16 2043001 2043001 G T SYNGR3 Missense_Mutation p.E206D 0.30 tolerated(1) benign(0.013) TCGA-06-5416-01 16 20442349 20442349 T C ACSM5 Missense_Mutation p.I387T 0.45 deleterious(0.02) probably_damaging(0.99) TCGA-06-5416-01 16 20477043 20477043 C T ACSM2A Nonsense_Mutation p.R128* 0.17 TCGA-06-5416-01 16 20481000 20481000 G A ACSM2A Silent p.E185E 0.17 TCGA-06-5416-01 16 20559745 20559745 G A ACSM2B Silent p.Y315Y 0.39 TCGA-06-5416-01 16 20566632 20566632 C T ACSM2B Silent p.E185E 0.17 TCGA-06-5416-01 16 20638517 20638517 G A ACSM1 Missense_Mutation p.A474V 0.44 deleterious(0) probably_damaging(0.92) TCGA-06-5416-01 16 20681216 20681216 G T ACSM1 Missense_Mutation p.P282Q 0.22 tolerated(0.07) probably_damaging(0.996) TCGA-06-5416-01 16 20696615 20696615 G A ACSM1 Silent p.V101V 0.43 TCGA-06-5416-01 16 20749216 20749216 G A THUMPD1 Nonsense_Mutation p.R157* 0.27 TCGA-06-5416-01 16 20750341 20750341 G A THUMPD1 Missense_Mutation p.A95V 0.46 tolerated(1) benign(0.001) TCGA-06-5416-01 16 20801957 20801957 A G ACSM3 Missense_Mutation p.I425V 0.41 tolerated(0.08) possibly_damaging(0.809) TCGA-06-5416-01 16 20970605 20970605 G A DNAH3 Silent p.T3574T 0.40 TCGA-06-5416-01 16 20974640 20974640 A C DNAH3 Missense_Mutation p.I3522M 0.15 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 16 20975054 20975054 C A DNAH3 Missense_Mutation p.Q3384H 0.22 tolerated(0.39) benign(0.141) TCGA-06-5416-01 16 20975258 20975258 C T DNAH3 Silent p.P3316P 0.21 TCGA-06-5416-01 16 20975264 20975264 G A DNAH3 Silent p.I3314I 0.55 TCGA-06-5416-01 16 20975272 20975272 C T DNAH3 Missense_Mutation p.A3312T 0.23 tolerated(0.06) benign(0.383) TCGA-06-5416-01 16 20975574 20975574 G A DNAH3 Missense_Mutation p.A3211V 0.43 deleterious(0) possibly_damaging(0.864) TCGA-06-5416-01 16 20975656 20975656 C A DNAH3 Nonsense_Mutation p.E3184* 0.23 TCGA-06-5416-01 16 20981212 20981212 G A DNAH3 Missense_Mutation p.S2787L 0.17 deleterious(0) possibly_damaging(0.869) TCGA-06-5416-01 16 20999312 20999312 G A DNAH3 Missense_Mutation p.S2226L 0.41 deleterious(0.04) possibly_damaging(0.612) TCGA-06-5416-01 16 21051232 21051232 C A DNAH3 Missense_Mutation p.D1558Y 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 21060950 21060950 G T DNAH3 Missense_Mutation p.F1467L 0.40 deleterious(0.01) probably_damaging(0.914) TCGA-06-5416-01 16 21060986 21060986 G A DNAH3 Silent p.C1455C 0.49 TCGA-06-5416-01 16 21065780 21065780 G A DNAH3 Nonsense_Mutation p.R1334* 0.43 TCGA-06-5416-01 16 21109957 21109957 G A DNAH3 Missense_Mutation p.R834W 0.47 deleterious(0.01) benign(0.031) TCGA-06-5416-01 16 21117859 21117859 C A DNAH3 Missense_Mutation p.D746Y 0.25 deleterious(0.01) benign(0.058) TCGA-06-5416-01 16 21123100 21123100 C A DNAH3 Missense_Mutation p.R649I 0.20 tolerated(0.29) benign(0.017) TCGA-06-5416-01 16 21128601 21128601 G A DNAH3 Silent p.N579N 0.14 TCGA-06-5416-01 16 21136526 21136526 C A DNAH3 Missense_Mutation p.E458D 0.17 tolerated(0.2) benign(0.001) TCGA-06-5416-01 16 21185437 21185437 C A TMEM159 Silent p.V124V 0.25 TCGA-06-5416-01 16 21213572 21213572 G A ZP2 Silent p.V380V 0.43 TCGA-06-5416-01 16 21261711 21261711 T C ANKS4B Missense_Mutation p.V275A 0.52 deleterious(0) benign(0.13) TCGA-06-5416-01 16 2140318 2140318 G A PKD1 Missense_Mutation p.R4138C 0.22 probably_damaging(0.962) TCGA-06-5416-01 16 21416146 21416146 C T NPIPB3 Missense_Mutation p.E188K 0.13 probably_damaging(0.968) TCGA-06-5416-01 16 2143648 2143648 G A PKD1 Missense_Mutation p.P3638L 0.30 possibly_damaging(0.889) TCGA-06-5416-01 16 2149691 2149691 G A PKD1 Missense_Mutation p.P3335L 0.29 probably_damaging(1) TCGA-06-5416-01 16 2158769 2158769 G A PKD1 Silent p.F2133F 0.24 TCGA-06-5416-01 16 216473 216473 T C HBM Splice_Site p.X99_splice 0.27 TCGA-06-5416-01 16 21698743 21698743 G T OTOA Missense_Mutation p.D137Y 0.19 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 16 21698957 21698957 C T OTOA Missense_Mutation p.A208V 0.18 tolerated(0.1) benign(0.106) TCGA-06-5416-01 16 21702940 21702940 C T OTOA Missense_Mutation p.S224L 0.15 deleterious(0) possibly_damaging(0.708) TCGA-06-5416-01 16 21702995 21702995 C A OTOA Silent p.S242S 0.23 TCGA-06-5416-01 16 21728269 21728269 A G OTOA Missense_Mutation p.I510M 0.39 tolerated(0.12) benign(0.089) TCGA-06-5416-01 16 21739673 21739673 C A OTOA Missense_Mutation p.L710I 0.23 tolerated(0.08) benign(0.17) TCGA-06-5416-01 16 21739697 21739697 G A OTOA Missense_Mutation p.D718N 0.44 tolerated(0.35) benign(0.008) TCGA-06-5416-01 16 21809153 21809153 A C RP11-645C24.5 5'Flank 0.46 TCGA-06-5416-01 16 21854901 21854901 C T NPIPB4 Silent p.G117G 0.17 TCGA-06-5416-01 16 21964640 21964640 A G UQCRC2 5'UTR 0.67 TCGA-06-5416-01 16 21974131 21974131 C T UQCRC2 Missense_Mutation p.R147C 0.45 deleterious(0.01) benign(0.044) TCGA-06-5416-01 16 21994611 21994611 G A UQCRC2 3'UTR 0.29 TCGA-06-5416-01 16 21995901 21995901 C A PDZD9 Missense_Mutation p.R101I 0.39 tolerated(0.08) possibly_damaging(0.864) TCGA-06-5416-01 16 22000012 22000012 T C PDZD9 Silent p.Q44Q 0.13 TCGA-06-5416-01 16 22132392 22132392 C A VWA3A Missense_Mutation p.S407Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 22134405 22134405 G T VWA3A Splice_Site p.X453_splice 0.32 TCGA-06-5416-01 16 22269944 22269944 G A EEF2K Missense_Mutation p.D387N 0.14 deleterious(0.01) probably_damaging(0.974) TCGA-06-5416-01 16 22274454 22274454 C T EEF2K Silent p.S441S 0.12 TCGA-06-5416-01 16 22285035 22285035 G A EEF2K Missense_Mutation p.R618Q 0.52 deleterious(0.01) probably_damaging(0.923) TCGA-06-5416-01 16 2239059 2239059 C T CASKIN1 Missense_Mutation p.A196T 0.14 probably_damaging(0.983) TCGA-06-5416-01 16 2240338 2240338 T G CASKIN1 Missense_Mutation p.K39T 0.16 probably_damaging(0.934) TCGA-06-5416-01 16 22579880 22579880 G A RP11-368J21.3 RNA 0.10 TCGA-06-5416-01 16 22580560 22580560 T C RP11-368J21.3 RNA 0.22 TCGA-06-5416-01 16 2258299 2258299 G A MLST8 Missense_Mutation p.R221H 0.43 deleterious(0.03) probably_damaging(0.967) TCGA-06-5416-01 16 2263727 2263727 C A PGP 3'UTR 0.24 TCGA-06-5416-01 16 2283955 2283955 G T E4F1 Missense_Mutation p.A447S 0.14 tolerated(0.54) benign(0.316) TCGA-06-5416-01 16 2284278 2284278 C T E4F1 Silent p.G494G 0.20 TCGA-06-5416-01 16 22926505 22926505 C T HS3ST2 Silent p.D242D 0.19 TCGA-06-5416-01 16 22926529 22926529 C T HS3ST2 Silent p.I250I 0.19 TCGA-06-5416-01 16 23203729 23203729 C T SCNN1G Silent p.A225A 0.15 TCGA-06-5416-01 16 23224215 23224215 G T SCNN1G Missense_Mutation p.E477D 0.19 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 16 23379269 23379269 G T SCNN1B Missense_Mutation p.G290V 0.43 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 16 23392092 23392092 C T SCNN1B Silent p.I631I 0.21 TCGA-06-5416-01 16 23392268 23392268 G A SCNN1B 3'UTR 0.28 TCGA-06-5416-01 16 23500005 23500005 T C GGA2 Silent p.L167L 0.45 TCGA-06-5416-01 16 23503027 23503027 C T GGA2 Missense_Mutation p.R149Q 0.21 tolerated(0.39) benign(0.267) TCGA-06-5416-01 16 23570939 23570939 C A UBFD1 Missense_Mutation p.A169D 0.21 tolerated(0.08) benign(0.216) TCGA-06-5416-01 16 23573950 23573950 G A UBFD1 Missense_Mutation p.R212H 0.57 tolerated(0.21) benign(0.001) TCGA-06-5416-01 16 23637562 23637562 C T PALB2 Missense_Mutation p.A915T 0.20 tolerated(1) benign(0) TCGA-06-5416-01 16 23641181 23641181 T C PALB2 Missense_Mutation p.D765G 0.21 tolerated(0.21) benign(0.022) TCGA-06-5416-01 16 23641303 23641303 A G PALB2 Silent p.C724C 0.20 TCGA-06-5416-01 16 23641340 23641340 G A PALB2 Missense_Mutation p.A712V 0.45 tolerated(0.25) benign(0.009) TCGA-06-5416-01 16 23692244 23692244 G T PLK1 Missense_Mutation p.G196V 0.36 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 23718080 23718080 C T ERN2 Missense_Mutation p.R209Q 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 2373369 2373369 C T ABCA3 Intron 0.42 TCGA-06-5416-01 16 23767199 23767199 G A CHP2 Missense_Mutation p.A58T 0.18 deleterious(0.02) benign(0.349) TCGA-06-5416-01 16 23768583 23768583 G A CHP2 Missense_Mutation p.R159H 0.21 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 16 239143 239143 A T LUC7L 3'UTR 0.04 TCGA-06-5416-01 16 24046763 24046763 C T PRKCB Missense_Mutation p.R142C 0.13 deleterious(0) benign(0.278) TCGA-06-5416-01 16 24105588 24105588 C A PRKCB Missense_Mutation p.S264Y 0.20 deleterious(0.03) probably_damaging(0.967) TCGA-06-5416-01 16 24551892 24551892 A G RBBP6 5'UTR 0.23 TCGA-06-5416-01 16 24551951 24551951 T C RBBP6 Missense_Mutation p.S2P 0.40 deleterious_low_confidence(0.04) possibly_damaging(0.641) TCGA-06-5416-01 16 24557520 24557520 C A RBBP6 Missense_Mutation p.S68Y 0.47 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-06-5416-01 16 24580284 24580284 C T RBBP6 Missense_Mutation p.S758L 0.22 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 16 24581555 24581555 C T RBBP6 Missense_Mutation p.R1182C 0.23 tolerated_low_confidence(0.09) unknown(0) TCGA-06-5416-01 16 24802455 24802455 A C TNRC6A Missense_Mutation p.D831A 0.46 deleterious(0) benign(0.328) TCGA-06-5416-01 16 24815516 24815516 G A TNRC6A Missense_Mutation p.R1238Q 0.18 deleterious(0.02) probably_damaging(0.961) TCGA-06-5416-01 16 24888641 24888641 C T SLC5A11 Silent p.A180A 0.25 TCGA-06-5416-01 16 24895409 24895409 G T SLC5A11 Missense_Mutation p.Q207H 0.04 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 16 249118 249118 G A LUC7L Silent p.F210F 0.22 TCGA-06-5416-01 16 24918437 24918437 G A SLC5A11 Missense_Mutation p.M402I 0.18 tolerated(0.36) possibly_damaging(0.826) TCGA-06-5416-01 16 24921675 24921675 G A SLC5A11 Missense_Mutation p.E567K 0.35 tolerated(0.1) benign(0.003) TCGA-06-5416-01 16 24942233 24942233 C A ARHGAP17 Missense_Mutation p.R796I 0.23 deleterious_low_confidence(0) benign(0) TCGA-06-5416-01 16 2495477 2495477 G A CCNF Nonsense_Mutation p.W316* 0.18 TCGA-06-5416-01 16 25235709 25235709 G A AQP8 Nonsense_Mutation p.W138* 0.22 TCGA-06-5416-01 16 25255403 25255403 G A ZKSCAN2 Missense_Mutation p.R562C 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 2546980 2546980 G A RP11-20I23.1 Silent p.A277A 0.19 TCGA-06-5416-01 16 2580612 2580612 G A CEMP1 Missense_Mutation p.R155C 0.22 tolerated_low_confidence(0.23) benign(0.002) TCGA-06-5416-01 16 27221472 27221472 G T KDM8 Nonsense_Mutation p.E48* 0.23 TCGA-06-5416-01 16 27367195 27367195 C T IL4R Missense_Mutation p.A246V 0.21 tolerated(1) benign(0.006) TCGA-06-5416-01 16 27448813 27448813 G T IL21R Missense_Mutation p.D53Y 0.16 deleterious(0.01) probably_damaging(0.969) TCGA-06-5416-01 16 27459912 27459912 G T IL21R Nonsense_Mutation p.E309* 0.25 TCGA-06-5416-01 16 27460268 27460268 C A IL21R Silent p.S427S 0.24 TCGA-06-5416-01 16 27629751 27629751 C T KIAA0556 Silent p.Y23Y 0.23 TCGA-06-5416-01 16 27895882 27895882 C T GSG1L Missense_Mutation p.E159K 0.41 deleterious(0) possibly_damaging(0.647) TCGA-06-5416-01 16 2812433 2812433 C T SRRM2 Missense_Mutation p.S635F 0.46 unknown(0) TCGA-06-5416-01 16 2812802 2812802 G A SRRM2 Missense_Mutation p.R758Q 0.26 unknown(0) TCGA-06-5416-01 16 2812859 2812859 G A SRRM2 Missense_Mutation p.R777H 0.45 unknown(0) TCGA-06-5416-01 16 2814642 2814642 G T SRRM2 Missense_Mutation p.M1371I 0.04 unknown(0) TCGA-06-5416-01 16 2816657 2816657 G A SRRM2 Missense_Mutation p.R2043Q 0.19 unknown(0) TCGA-06-5416-01 16 28222784 28222784 G A XPO6 5'UTR 0.40 TCGA-06-5416-01 16 28331803 28331803 C T SBK1 Missense_Mutation p.S279L 0.17 deleterious(0.03) benign(0.189) TCGA-06-5416-01 16 2834839 2834839 C T PRSS33 Intron 0.17 TCGA-06-5416-01 16 28509239 28509239 G A APOBR Silent p.A959A 0.60 TCGA-06-5416-01 16 28513444 28513444 A G IL27 Silent p.R105R 0.27 TCGA-06-5416-01 16 2867447 2867447 G A PRSS21 Silent p.A27A 0.50 TCGA-06-5416-01 16 2871564 2871564 T G PRSS21 Missense_Mutation p.F301L 0.14 tolerated(1) unknown(0) TCGA-06-5416-01 16 28834643 28834643 G T ATXN2L Missense_Mutation p.Q21H 0.61 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 16 28836695 28836695 G A ATXN2L Missense_Mutation p.S103N 0.34 tolerated(0.5) benign(0.007) TCGA-06-5416-01 16 28856673 28856673 C T TUFM Missense_Mutation p.A126T 0.18 deleterious(0) possibly_damaging(0.55) TCGA-06-5416-01 16 28898571 28898571 G T ATP2A1 Missense_Mutation p.Q202H 0.36 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 16 28914187 28914187 C T ATP2A1 Missense_Mutation p.A900V 0.41 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 16 28914739 28914739 C T ATP2A1 Silent p.F986F 0.19 TCGA-06-5416-01 16 28922298 28922298 G T RABEP2 Missense_Mutation p.L334I 0.20 deleterious(0.02) benign(0.106) TCGA-06-5416-01 16 28931182 28931182 C A RABEP2 Missense_Mutation p.E119D 0.20 tolerated(0.13) benign(0.06) TCGA-06-5416-01 16 28931216 28931216 C T RABEP2 Missense_Mutation p.R108Q 0.18 tolerated(0.05) benign(0.034) TCGA-06-5416-01 16 28944430 28944430 G T CD19 Missense_Mutation p.S185I 0.51 deleterious(0.04) possibly_damaging(0.883) TCGA-06-5416-01 16 28965912 28965912 C A NFATC2IP Missense_Mutation p.L163I 0.45 tolerated(0.32) benign(0.258) TCGA-06-5416-01 16 2903973 2903973 C T PRSS22 Missense_Mutation p.D204N 0.16 deleterious(0.05) possibly_damaging(0.558) TCGA-06-5416-01 16 29690499 29690499 C T QPRT 5'UTR 0.10 TCGA-06-5416-01 16 29706148 29706148 C A QPRT Missense_Mutation p.F59L 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 16 29810616 29810616 G A KIF22 Missense_Mutation p.R264H 0.49 tolerated(0.07) probably_damaging(1) TCGA-06-5416-01 16 29824441 29824441 C T PRRT2 Silent p.G22G 0.49 TCGA-06-5416-01 16 29842338 29842338 G A MVP Missense_Mutation p.E89K 0.21 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 16 29845346 29845346 G A MVP Missense_Mutation p.R179H 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 16 29853344 29853344 C T MVP Silent p.C515C 0.36 TCGA-06-5416-01 16 29912544 29912544 C T ASPHD1 Silent p.F84F 0.40 TCGA-06-5416-01 16 29913128 29913128 G A ASPHD1 Missense_Mutation p.R279Q 0.17 deleterious(0.04) possibly_damaging(0.751) TCGA-06-5416-01 16 29922308 29922308 C A KCTD13 Missense_Mutation p.K248N 0.21 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 16 29937208 29937208 G A KCTD13 Silent p.G49G 0.43 TCGA-06-5416-01 16 29998197 29998197 G A TAOK2 Silent p.G868G 0.49 TCGA-06-5416-01 16 29998366 29998366 G A TAOK2 Missense_Mutation p.D925N 0.44 deleterious_low_confidence(0) benign(0.27) TCGA-06-5416-01 16 29999325 29999325 A C TAOK2 3'UTR 0.11 TCGA-06-5416-01 16 30002108 30002108 C T TAOK2 3'Flank 0.38 TCGA-06-5416-01 16 30017620 30017620 C T DOC2A Missense_Mutation p.E364K 0.48 deleterious(0.01) benign(0.136) TCGA-06-5416-01 16 30021428 30021428 C T DOC2A Missense_Mutation p.G39E 0.49 tolerated(0.29) benign(0.005) TCGA-06-5416-01 16 30021448 30021448 G T DOC2A Silent p.I32I 0.22 TCGA-06-5416-01 16 30080183 30080183 G A ALDOA Missense_Mutation p.G196R 0.38 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 16 30100314 30100314 A G TBX6 Missense_Mutation p.S191P 0.19 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 16 3016206 3016206 G A KREMEN2 Missense_Mutation p.R112H 0.49 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 16 30197981 30197981 C T CORO1A Silent p.I87I 0.51 TCGA-06-5416-01 16 3025357 3025357 G A PKMYT1 Silent p.L279L 0.11 TCGA-06-5416-01 16 3025571 3025571 C A PKMYT1 Missense_Mutation p.E207D 0.20 deleterious(0.01) benign(0.414) TCGA-06-5416-01 16 30366150 30366150 G T CD2BP2 Intron 0.24 TCGA-06-5416-01 16 30376827 30376827 G A TBC1D10B Nonsense_Mutation p.R349* 0.41 TCGA-06-5416-01 16 30380659 30380659 G T TBC1D10B Silent p.S282S 0.27 TCGA-06-5416-01 16 304642 304642 C T ITFG3 Missense_Mutation p.A77V 0.43 tolerated(1) benign(0.006) TCGA-06-5416-01 16 30507514 30507514 G A ITGAL Missense_Mutation p.D534N 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 30518043 30518043 G A ITGAL Missense_Mutation p.A792T 0.17 tolerated(0.88) benign(0.003) TCGA-06-5416-01 16 30522201 30522201 G T ITGAL Splice_Site p.X874_splice 0.28 TCGA-06-5416-01 16 30616097 30616097 G A ZNF689 Missense_Mutation p.R331C 0.63 tolerated(0.19) probably_damaging(0.959) TCGA-06-5416-01 16 3065903 3065903 G A CLDN6 Silent p.I40I 0.40 TCGA-06-5416-01 16 3070432 3070432 C T TNFRSF12A Missense_Mutation p.L12F 0.13 tolerated_low_confidence(0.24) unknown(0) TCGA-06-5416-01 16 30721980 30721980 G A SRCAP Intron 0.17 TCGA-06-5416-01 16 30722116 30722116 G A SRCAP Silent p.Q392Q 0.21 TCGA-06-5416-01 16 30732223 30732223 G A SRCAP Silent p.P1059P 0.18 TCGA-06-5416-01 16 30732588 30732588 C A SRCAP Missense_Mutation p.P1111H 0.41 unknown(0) TCGA-06-5416-01 16 30747706 30747706 C T SRCAP Silent p.L2305L 0.14 TCGA-06-5416-01 16 30749529 30749529 G A SRCAP Missense_Mutation p.R2723H 0.47 unknown(0) TCGA-06-5416-01 16 30768907 30768907 G T C16orf93 Missense_Mutation p.L296M 0.49 tolerated(0.12) benign(0.184) TCGA-06-5416-01 16 30941564 30941564 G A FBXL19 Silent p.S340S 0.44 TCGA-06-5416-01 16 31012264 31012264 G A STX1B Missense_Mutation p.R89W 0.14 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 16 31049840 31049840 G A STX4 Missense_Mutation p.D192N 0.22 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 16 31073130 31073130 G A ZNF668 Silent p.F396F 0.20 TCGA-06-5416-01 16 31073550 31073550 G T ZNF668 Missense_Mutation p.F256L 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 16 31075267 31075267 C T ZNF668 Missense_Mutation p.D195N 0.48 deleterious(0.01) possibly_damaging(0.865) TCGA-06-5416-01 16 31089014 31089014 A G ZNF646 Missense_Mutation p.T457A 0.12 tolerated(0.32) benign(0.004) TCGA-06-5416-01 16 31090929 31090929 G A ZNF646 Missense_Mutation p.R1095H 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 16 31092521 31092521 G A ZNF646 Missense_Mutation p.A1626T 0.43 tolerated(0.15) benign(0.144) TCGA-06-5416-01 16 31121043 31121043 G A BCKDK Missense_Mutation p.R105H 0.26 tolerated(0.05) possibly_damaging(0.735) TCGA-06-5416-01 16 31141388 31141388 G T KAT8 Missense_Mutation p.K274N 0.41 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 31150587 31150587 G A PRSS36 Missense_Mutation p.P814S 0.23 tolerated(0.25) benign(0.11) TCGA-06-5416-01 16 31154138 31154138 G A PRSS36 Missense_Mutation p.S426L 0.24 tolerated(0.38) benign(0.001) TCGA-06-5416-01 16 31157221 31157221 C A PRSS36 Missense_Mutation p.E203D 0.20 tolerated(0.16) benign(0.005) TCGA-06-5416-01 16 3118198 3118198 C T IL32 Silent p.G53G 0.50 TCGA-06-5416-01 16 31214037 31214037 G A C16orf98 Missense_Mutation p.R88H 0.53 unknown(0) TCGA-06-5416-01 16 31228191 31228191 G A PYDC1 Silent p.T53T 0.46 TCGA-06-5416-01 16 312436 312436 C T ITFG3 Silent p.C285C 0.42 TCGA-06-5416-01 16 31308898 31308898 C A ITGAM Missense_Mutation p.L474M 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 31332885 31332885 G A ITGAM Missense_Mutation p.E648K 0.18 tolerated(0.24) benign(0.098) TCGA-06-5416-01 16 31372492 31372492 G T ITGAX Missense_Mutation p.D324Y 0.19 deleterious(0.04) possibly_damaging(0.86) TCGA-06-5416-01 16 31374629 31374629 G T ITGAX Missense_Mutation p.E548D 0.19 tolerated(0.22) benign(0.004) TCGA-06-5416-01 16 31382703 31382703 C T ITGAX Silent p.A630A 0.18 TCGA-06-5416-01 16 3140103 3140103 G A ZSCAN10 Silent p.R389R 0.38 TCGA-06-5416-01 16 3140560 3140560 G A ZSCAN10 Missense_Mutation p.S237F 0.17 tolerated(0.49) possibly_damaging(0.572) TCGA-06-5416-01 16 3140571 3140571 G T ZSCAN10 Silent p.I233I 0.39 TCGA-06-5416-01 16 31414916 31414916 C T ITGAD Silent p.I218I 0.44 TCGA-06-5416-01 16 31421759 31421759 G A ITGAD Missense_Mutation p.G376E 0.20 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 16 31422117 31422117 G A ITGAD Missense_Mutation p.R425H 0.20 deleterious(0.02) probably_damaging(0.993) TCGA-06-5416-01 16 31429421 31429421 G A ITGAD Missense_Mutation p.R842H 0.23 tolerated(0.33) benign(0.024) TCGA-06-5416-01 16 31473668 31473668 G A ARMC5 Missense_Mutation p.R267Q 0.45 deleterious(0.03) probably_damaging(0.975) TCGA-06-5416-01 16 31485541 31485541 G T TGFB1I1 Missense_Mutation p.D132Y 0.17 deleterious(0) possibly_damaging(0.853) TCGA-06-5416-01 16 31486004 31486004 G A TGFB1I1 Missense_Mutation p.D214N 0.34 tolerated(0.08) probably_damaging(0.98) TCGA-06-5416-01 16 3169309 3169309 G A ZNF205 Silent p.G216G 0.23 TCGA-06-5416-01 16 31766511 31766511 G T ZNF720 Intron 0.31 TCGA-06-5416-01 16 3187307 3187307 A T ZNF213 Missense_Mutation p.D9V 0.48 tolerated(0.18) benign(0.043) TCGA-06-5416-01 16 3191118 3191118 C T ZNF213 Missense_Mutation p.R384C 0.45 tolerated(0.08) benign(0.007) TCGA-06-5416-01 16 31925870 31925870 G A ZNF267 Silent p.S100S 0.19 TCGA-06-5416-01 16 31926312 31926312 G A ZNF267 Missense_Mutation p.E248K 0.20 tolerated(0.12) benign(0.006) TCGA-06-5416-01 16 31927453 31927453 G A ZNF267 Missense_Mutation p.G628D 0.21 deleterious(0.01) benign(0.057) TCGA-06-5416-01 16 3274045 3274045 G A ZNF200 Silent p.F345F 0.23 TCGA-06-5416-01 16 32893958 32893958 C T RP11-989E6.3 5'Flank 0.26 TCGA-06-5416-01 16 3293192 3293192 C T MEFV Silent p.K765K 0.22 TCGA-06-5416-01 16 3294522 3294522 G T MEFV Silent p.L559L 0.21 TCGA-06-5416-01 16 3297234 3297234 C A MEFV Missense_Mutation p.A457S 0.33 deleterious(0.03) benign(0.017) TCGA-06-5416-01 16 3340105 3340105 C T ZNF263 Silent p.L533L 0.42 TCGA-06-5416-01 16 334456 334456 C T PDIA2 Missense_Mutation p.A90V 0.43 tolerated(0.25) benign(0.067) TCGA-06-5416-01 16 334694 334694 C T PDIA2 Nonsense_Mutation p.R148* 0.36 TCGA-06-5416-01 16 3348942 3348942 G A TIGD7 3'UTR 0.15 TCGA-06-5416-01 16 3349678 3349678 G A TIGD7 Nonsense_Mutation p.R313* 0.22 TCGA-06-5416-01 16 3367426 3367426 C T ZNF75A Missense_Mutation p.R150C 0.45 tolerated(0.11) possibly_damaging(0.502) TCGA-06-5416-01 16 3367769 3367769 G A ZNF75A Missense_Mutation p.R264Q 0.26 tolerated(1) benign(0.024) TCGA-06-5416-01 16 3406305 3406305 G A OR2C1 Missense_Mutation p.R122H 0.23 deleterious(0.03) benign(0.015) TCGA-06-5416-01 16 3434258 3434258 G T ZSCAN32 Intron 0.69 TCGA-06-5416-01 16 3451954 3451954 C T ZNF174 5'UTR 0.20 TCGA-06-5416-01 16 3452276 3452276 T G ZNF174 Missense_Mutation p.M91R 0.23 tolerated(0.05) benign(0.338) TCGA-06-5416-01 16 3458973 3458973 C T ZNF174 3'UTR 0.18 TCGA-06-5416-01 16 3486450 3486450 G A ZNF597 Nonsense_Mutation p.R417* 0.20 TCGA-06-5416-01 16 3533506 3533506 C T NAA60 Missense_Mutation p.L161F 0.15 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 16 3607642 3607642 T G NLRC3 Missense_Mutation p.K731T 0.28 deleterious(0) possibly_damaging(0.612) TCGA-06-5416-01 16 3640689 3640689 C T SLX4 Missense_Mutation p.E984K 0.43 tolerated(0.31) benign(0.011) TCGA-06-5416-01 16 3641054 3641054 C T SLX4 Missense_Mutation p.R862Q 0.48 deleterious(0.05) probably_damaging(0.935) TCGA-06-5416-01 16 3641107 3641107 T G SLX4 Missense_Mutation p.E844D 0.42 deleterious(0.01) probably_damaging(0.943) TCGA-06-5416-01 16 3707061 3707061 C T DNASE1 Silent p.I166I 0.41 TCGA-06-5416-01 16 3712025 3712025 C T TRAP1 Missense_Mutation p.A635T 0.44 tolerated(0.39) benign(0.362) TCGA-06-5416-01 16 3712770 3712770 C T DNASE1 3'Flank 0.23 TCGA-06-5416-01 16 3724345 3724345 C T TRAP1 Missense_Mutation p.D347N 0.22 tolerated(0.1) benign(0.025) TCGA-06-5416-01 16 3778852 3778852 C T CREBBP Missense_Mutation p.A2066T 0.28 unknown(0) TCGA-06-5416-01 16 3817899 3817899 C A CREBBP Missense_Mutation p.E1024D 0.06 unknown(0) TCGA-06-5416-01 16 3828126 3828126 C T CREBBP Missense_Mutation p.E667K 0.17 probably_damaging(1) TCGA-06-5416-01 16 3900987 3900987 C T CREBBP Missense_Mutation p.E37K 0.21 probably_damaging(0.999) TCGA-06-5416-01 16 4016675 4016675 C T ADCY9 Missense_Mutation p.D1055N 0.23 tolerated(0.18) benign(0.037) TCGA-06-5416-01 16 4027593 4027593 G A ADCY9 Silent p.V906V 0.38 TCGA-06-5416-01 16 4164022 4164022 C A ADCY9 Missense_Mutation p.E474D 0.23 tolerated(0.15) benign(0.167) TCGA-06-5416-01 16 4322685 4322685 C T TFAP4 Silent p.E21E 0.17 TCGA-06-5416-01 16 4438057 4438057 C T CORO7 Missense_Mutation p.E239K 0.22 deleterious(0.04) probably_damaging(0.994) TCGA-06-5416-01 16 4516347 4516347 G A NMRAL1 Silent p.S112S 0.19 TCGA-06-5416-01 16 4559505 4559505 T C HMOX2 Silent p.R263R 0.23 TCGA-06-5416-01 16 456383 456383 C T DECR2 Missense_Mutation p.P63S 0.41 tolerated(0.21) benign(0.024) TCGA-06-5416-01 16 4564135 4564135 C T CDIP1 5'UTR 0.23 TCGA-06-5416-01 16 4659598 4659598 G A UBALD1 3'UTR 0.57 TCGA-06-5416-01 16 46729544 46729544 C T ORC6 Nonsense_Mutation p.R174* 0.41 TCGA-06-5416-01 16 46763536 46763536 C A MYLK3 Missense_Mutation p.K544N 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 46836774 46836774 G A C16orf87 3'UTR 0.53 TCGA-06-5416-01 16 4700403 4700403 G T MGRN1 Missense_Mutation p.E42D 0.12 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 16 47120228 47120228 G T NETO2 Missense_Mutation p.F302L 0.15 deleterious(0) benign(0.211) TCGA-06-5416-01 16 47143421 47143421 G A NETO2 Nonsense_Mutation p.R286* 0.43 TCGA-06-5416-01 16 47156818 47156818 C T NETO2 Missense_Mutation p.D163N 0.39 tolerated(0.07) benign(0.285) TCGA-06-5416-01 16 4731550 4731550 G T MGRN1 Splice_Site p.X378_splice 0.30 TCGA-06-5416-01 16 4749151 4749151 G A ANKS3 Silent p.I437I 0.50 TCGA-06-5416-01 16 47497823 47497823 G A PHKB Intron 0.46 TCGA-06-5416-01 16 4750786 4750786 C T ANKS3 Intron 0.33 TCGA-06-5416-01 16 4750865 4750865 C A ANKS3 Intron 0.19 TCGA-06-5416-01 16 4751541 4751541 T A ANKS3 Missense_Mutation p.E338V 0.26 deleterious(0.02) benign(0.305) TCGA-06-5416-01 16 47694433 47694433 C T PHKB Missense_Mutation p.A663V 0.42 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 16 47699855 47699855 C T PHKB Intron 0.20 TCGA-06-5416-01 16 4790337 4790337 C T C16orf71 Silent p.L154L 0.22 TCGA-06-5416-01 16 4797506 4797506 C T C16orf71 Silent p.L481L 0.30 TCGA-06-5416-01 16 4802887 4802887 G A ZNF500 Silent p.P311P 0.19 TCGA-06-5416-01 16 48139203 48139203 G A ABCC12 Silent p.G840G 0.52 TCGA-06-5416-01 16 48141262 48141262 G A ABCC12 Silent p.L816L 0.22 TCGA-06-5416-01 16 48155663 48155663 T C ABCC12 Missense_Mutation p.E559G 0.19 deleterious(0) benign(0.159) TCGA-06-5416-01 16 48155685 48155685 T C ABCC12 Missense_Mutation p.I552V 0.23 deleterious(0) possibly_damaging(0.815) TCGA-06-5416-01 16 48180284 48180284 G A ABCC12 Missense_Mutation p.R18W 0.21 deleterious(0) possibly_damaging(0.582) TCGA-06-5416-01 16 48209213 48209213 G T ABCC11 Silent p.L1218L 0.42 TCGA-06-5416-01 16 48227838 48227838 C T ABCC11 Silent p.T820T 0.21 TCGA-06-5416-01 16 48231911 48231911 G A ABCC11 Missense_Mutation p.S762F 0.45 tolerated(0.09) benign(0.003) TCGA-06-5416-01 16 48239410 48239410 G A ABCC11 Silent p.S573S 0.37 TCGA-06-5416-01 16 48258199 48258199 G A ABCC11 Silent p.L179L 0.16 TCGA-06-5416-01 16 48337173 48337173 T C LONP2 Silent p.H584H 0.44 TCGA-06-5416-01 16 4833730 4833730 A G SEPT12 Missense_Mutation p.C184R 0.32 tolerated(0.14) possibly_damaging(0.694) TCGA-06-5416-01 16 4882189 4882189 G A GLYR1 Nonsense_Mutation p.R110* 0.19 TCGA-06-5416-01 16 4934869 4934869 C T PPL Missense_Mutation p.E1263K 0.16 tolerated(0.05) probably_damaging(0.999) TCGA-06-5416-01 16 4934968 4934968 C A PPL Nonsense_Mutation p.E1230* 0.21 TCGA-06-5416-01 16 4950976 4950976 C A PPL Missense_Mutation p.D185Y 0.21 deleterious(0.03) benign(0.14) TCGA-06-5416-01 16 4953944 4953944 G A PPL Missense_Mutation p.A87V 0.48 tolerated(0.26) benign(0.158) TCGA-06-5416-01 16 49669663 49669663 C A ZNF423 Missense_Mutation p.D1134Y 0.41 deleterious(0.01) possibly_damaging(0.485) TCGA-06-5416-01 16 49670620 49670620 C T ZNF423 Missense_Mutation p.A815T 0.39 deleterious(0.01) possibly_damaging(0.842) TCGA-06-5416-01 16 49670699 49670699 C A ZNF423 Missense_Mutation p.E788D 0.23 tolerated(0.3) benign(0.044) TCGA-06-5416-01 16 49672421 49672421 C A ZNF423 Missense_Mutation p.K214N 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 16 4986993 4986993 C A PPL Missense_Mutation p.Q18H 0.16 tolerated(0.42) benign(0.001) TCGA-06-5416-01 16 50059562 50059562 C T CNEP1R1 Missense_Mutation p.A9V 0.47 tolerated_low_confidence(0.17) benign(0.012) TCGA-06-5416-01 16 50109556 50109556 C A HEATR3 Missense_Mutation p.L233M 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-06-5416-01 16 50118124 50118124 C T HEATR3 Silent p.C404C 0.25 TCGA-06-5416-01 16 50139038 50139038 C A HEATR3 3'UTR 0.18 TCGA-06-5416-01 16 50327327 50327327 C T ADCY7 Silent p.I250I 0.44 TCGA-06-5416-01 16 50402020 50402020 C A BRD7 Missense_Mutation p.R80I 0.17 deleterious(0.02) possibly_damaging(0.61) TCGA-06-5416-01 16 50402065 50402065 T G BRD7 Missense_Mutation p.K65T 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 16 5040886 5040886 A G SEC14L5 Missense_Mutation p.N155S 0.19 tolerated(0.17) benign(0.088) TCGA-06-5416-01 16 5050871 5050871 G A SEC14L5 Missense_Mutation p.E359K 0.21 deleterious(0) possibly_damaging(0.905) TCGA-06-5416-01 16 5055934 5055934 A G SEC14L5 Missense_Mutation p.E441G 0.47 deleterious(0) possibly_damaging(0.794) TCGA-06-5416-01 16 50765717 50765717 G T NOD2 Missense_Mutation p.R1037I 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 50784087 50784087 G A CYLD Missense_Mutation p.G160R 0.18 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 16 50785564 50785564 A C CYLD Missense_Mutation p.Q185P 0.16 deleterious(0.01) probably_damaging(0.98) TCGA-06-5416-01 16 50826601 50826601 G T CYLD Missense_Mutation p.D779Y 0.21 deleterious(0) possibly_damaging(0.724) TCGA-06-5416-01 16 50826613 50826613 G T CYLD Missense_Mutation p.D783Y 0.30 deleterious(0) possibly_damaging(0.834) TCGA-06-5416-01 16 50830341 50830341 C T CYLD Silent p.I931I 0.23 TCGA-06-5416-01 16 51174461 51174461 G A SALL1 Missense_Mutation p.P558S 0.48 tolerated(0.49) benign(0.109) TCGA-06-5416-01 16 5127974 5127974 G A ALG1 Silent p.R232R 0.22 TCGA-06-5416-01 16 5134791 5134791 A C ALG1 Missense_Mutation p.N435T 0.28 tolerated(0.41) benign(0.027) TCGA-06-5416-01 16 52473618 52473618 C A TOX3 Missense_Mutation p.S417I 0.37 deleterious_low_confidence(0) possibly_damaging(0.497) TCGA-06-5416-01 16 52473715 52473715 G A TOX3 Missense_Mutation p.P385S 0.18 tolerated_low_confidence(0.11) probably_damaging(0.986) TCGA-06-5416-01 16 53289619 53289619 C T CHD9 Silent p.I1379I 0.41 TCGA-06-5416-01 16 53337795 53337795 C A CHD9 Silent p.V1959V 0.22 TCGA-06-5416-01 16 53338292 53338292 A C CHD9 Missense_Mutation p.K2125T 0.13 possibly_damaging(0.892) TCGA-06-5416-01 16 53340189 53340189 C T CHD9 Silent p.V2220V 0.30 TCGA-06-5416-01 16 53476746 53476746 G A RBL2 Missense_Mutation p.R183H 0.14 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 16 53528149 53528149 T G AKTIP Missense_Mutation p.K204T 0.26 tolerated(0.1) possibly_damaging(0.659) TCGA-06-5416-01 16 53532488 53532488 C T AKTIP Silent p.K21K 0.17 TCGA-06-5416-01 16 53639336 53639336 G T RPGRIP1L Intron 0.23 TCGA-06-5416-01 16 53653105 53653105 G A RPGRIP1L Missense_Mutation p.R1150W 0.18 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 16 53675013 53675013 G T RPGRIP1L Missense_Mutation p.P964T 0.34 tolerated(0.1) probably_damaging(0.992) TCGA-06-5416-01 16 53698779 53698779 T C RPGRIP1L Intron 0.43 TCGA-06-5416-01 16 53913765 53913765 G T FTO Nonsense_Mutation p.G329* 0.21 TCGA-06-5416-01 16 53913879 53913879 G T FTO Nonsense_Mutation p.G367* 0.24 TCGA-06-5416-01 16 54145772 54145772 A G FTO Missense_Mutation p.D488G 0.43 deleterious(0.01) possibly_damaging(0.832) TCGA-06-5416-01 16 54966519 54966519 C T IRX5 Missense_Mutation p.A120V 0.44 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 16 55522508 55522508 C A MMP2 Missense_Mutation p.R296S 0.20 tolerated(0.43) benign(0.006) TCGA-06-5416-01 16 55616837 55616837 A T LPCAT2 Missense_Mutation p.S488C 0.45 tolerated(0.09) benign(0.005) TCGA-06-5416-01 16 55690589 55690589 C A SLC6A2 5'UTR 0.21 TCGA-06-5416-01 16 55734099 55734099 G A SLC6A2 Missense_Mutation p.D547N 0.20 tolerated(0.32) benign(0.014) TCGA-06-5416-01 16 55806425 55806425 C A CES1P1 RNA 0.17 TCGA-06-5416-01 16 55855297 55855297 C T CES1 Missense_Mutation p.E226K 0.28 tolerated(0.64) benign(0.084) TCGA-06-5416-01 16 56396446 56396446 C A AMFR 3'UTR 0.42 TCGA-06-5416-01 16 56441878 56441878 C A AMFR Nonsense_Mutation p.E222* 0.21 TCGA-06-5416-01 16 56468286 56468286 C A NUDT21 Nonsense_Mutation p.G207* 0.38 TCGA-06-5416-01 16 56468697 56468697 C A NUDT21 Missense_Mutation p.K172N 0.19 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 16 56599027 56599027 C T MT4 5'UTR 0.21 TCGA-06-5416-01 16 56686499 56686499 C T MT1B Silent p.C15C 0.40 TCGA-06-5416-01 16 56693060 56693060 G A MT1F Missense_Mutation p.C57Y 0.46 deleterious(0.03) probably_damaging(0.989) TCGA-06-5416-01 16 56872903 56872903 C T NUP93 Silent p.D686D 0.23 TCGA-06-5416-01 16 56904081 56904081 C T SLC12A3 Silent p.F225F 0.45 TCGA-06-5416-01 16 56947335 56947335 C T SLC12A3 3'UTR 0.22 TCGA-06-5416-01 16 56947352 56947352 G T SLC12A3 3'UTR 0.22 TCGA-06-5416-01 16 57016089 57016089 T C CETP Missense_Mutation p.S421P 0.41 deleterious(0.01) possibly_damaging(0.796) TCGA-06-5416-01 16 57054782 57054782 G T NLRC5 Missense_Mutation p.R53I 0.35 deleterious(0.05) benign(0.097) TCGA-06-5416-01 16 57075959 57075959 G A NLRC5 Missense_Mutation p.G1032E 0.44 deleterious(0.02) possibly_damaging(0.621) TCGA-06-5416-01 16 57080484 57080484 C A NLRC5 Missense_Mutation p.S1090Y 0.25 tolerated(0.85) benign(0.157) TCGA-06-5416-01 16 57243040 57243040 G T RSPRY1 Missense_Mutation p.D153Y 0.17 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 16 57250905 57250905 C T RSPRY1 Missense_Mutation p.R287C 0.23 deleterious(0.03) probably_damaging(0.996) TCGA-06-5416-01 16 57394398 57394398 C T CCL22 Silent p.V41V 0.36 TCGA-06-5416-01 16 57463053 57463053 G A CIAPIN1 3'UTR 0.32 TCGA-06-5416-01 16 57486775 57486775 G A COQ9 Missense_Mutation p.R102H 0.19 deleterious(0.01) benign(0.247) TCGA-06-5416-01 16 57689798 57689798 C T GPR56 Missense_Mutation p.S304F 0.42 deleterious(0) probably_damaging(0.933) TCGA-06-5416-01 16 57712181 57712181 C T GPR97 Missense_Mutation p.R149C 0.23 deleterious(0) possibly_damaging(0.614) TCGA-06-5416-01 16 57741528 57741528 G A CCDC135 Missense_Mutation p.E339K 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 57752385 57752385 C A CCDC135 Missense_Mutation p.L402M 0.20 tolerated(0.12) benign(0.135) TCGA-06-5416-01 16 57758695 57758695 G A CCDC135 Missense_Mutation p.R569Q 0.32 tolerated(0.11) possibly_damaging(0.837) TCGA-06-5416-01 16 57760012 57760012 G A CCDC135 Silent p.A597A 0.39 TCGA-06-5416-01 16 57760025 57760025 G A CCDC135 Missense_Mutation p.E602K 0.46 deleterious(0.04) probably_damaging(0.959) TCGA-06-5416-01 16 57784748 57784748 C G KATNB1 Missense_Mutation p.T100R 0.39 deleterious(0) possibly_damaging(0.762) TCGA-06-5416-01 16 57803628 57803628 G A KIFC3 Missense_Mutation p.T366I 0.36 tolerated(0.09) benign(0.097) TCGA-06-5416-01 16 57805498 57805498 C T KIFC3 Missense_Mutation p.R161H 0.25 tolerated(0.13) benign(0.411) TCGA-06-5416-01 16 57935490 57935490 C T CNGB1 Missense_Mutation p.R945Q 0.16 tolerated(0.25) benign(0.01) TCGA-06-5416-01 16 57965714 57965714 C T CNGB1 Missense_Mutation p.A481T 0.49 tolerated(0.56) benign(0.017) TCGA-06-5416-01 16 57991279 57991279 C T CNGB1 Silent p.E280E 0.47 TCGA-06-5416-01 16 58011841 58011841 C T TEPP Missense_Mutation p.L96F 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 58079113 58079113 G A MMP15 Silent p.E591E 0.90 TCGA-06-5416-01 16 58426488 58426488 G T GINS3 5'UTR 0.17 TCGA-06-5416-01 16 58426595 58426595 G T GINS3 Missense_Mutation p.E30D 0.31 deleterious(0.02) possibly_damaging(0.802) TCGA-06-5416-01 16 58437060 58437060 G T GINS3 Missense_Mutation p.R121L 0.35 tolerated(0.06) possibly_damaging(0.462) TCGA-06-5416-01 16 58572154 58572154 G A CNOT1 Nonsense_Mutation p.R1718* 0.52 TCGA-06-5416-01 16 58576378 58576378 G T CNOT1 Missense_Mutation p.T1510N 0.22 deleterious(0) possibly_damaging(0.877) TCGA-06-5416-01 16 58621756 58621756 C T CNOT1 Silent p.A79A 0.39 TCGA-06-5416-01 16 58622719 58622719 C T CNOT1 Missense_Mutation p.G65D 0.14 deleterious(0.04) possibly_damaging(0.905) TCGA-06-5416-01 16 613496 613496 C A C16orf11 Missense_Mutation p.L68M 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 61687550 61687550 C T CDH8 Missense_Mutation p.E788K 0.41 deleterious(0.04) probably_damaging(0.993) TCGA-06-5416-01 16 61851478 61851478 C T CDH8 Silent p.P394P 0.48 TCGA-06-5416-01 16 62055444 62055444 G A CDH8 5'UTR 0.41 TCGA-06-5416-01 16 62055488 62055488 T G CDH8 5'UTR 0.33 TCGA-06-5416-01 16 64981857 64981857 G T CDH11 Silent p.T680T 0.46 TCGA-06-5416-01 16 66600098 66600098 C T CKLF 3'Flank 0.31 TCGA-06-5416-01 16 66643699 66643699 G T CMTM3 Intron 0.33 TCGA-06-5416-01 16 66643845 66643845 C T CMTM3 Silent p.D153D 0.22 TCGA-06-5416-01 16 66768207 66768207 G A DYNC1LI2 Missense_Mutation p.A236V 0.50 tolerated(0.98) possibly_damaging(0.453) TCGA-06-5416-01 16 66881080 66881080 A G CA7 Missense_Mutation p.N63S 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 16 66919802 66919802 T A PDP2 3'UTR 0.19 TCGA-06-5416-01 16 66945898 66945898 T C CDH16 Missense_Mutation p.D565G 0.24 deleterious(0.04) benign(0.271) TCGA-06-5416-01 16 66969488 66969488 G A CES2 Missense_Mutation p.G48S 0.23 tolerated_low_confidence(0.09) benign(0.018) TCGA-06-5416-01 16 66974355 66974355 C T CES2 Silent p.H255H 0.41 TCGA-06-5416-01 16 67029726 67029726 C T CES4A Missense_Mutation p.P85L 0.21 deleterious(0) possibly_damaging(0.52) TCGA-06-5416-01 16 67037030 67037030 G A CES4A Missense_Mutation p.A250T 0.18 deleterious(0.02) possibly_damaging(0.823) TCGA-06-5416-01 16 67038094 67038094 C T CES4A Silent p.V349V 0.43 TCGA-06-5416-01 16 67039248 67039248 G T CES4A Missense_Mutation p.D423Y 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 67168071 67168071 C T C16orf70 Missense_Mutation p.P151S 0.37 tolerated(0.12) benign(0.189) TCGA-06-5416-01 16 67183099 67183099 A G B3GNT9 3'UTR 0.18 TCGA-06-5416-01 16 67183462 67183462 G A B3GNT9 Silent p.V309V 0.48 TCGA-06-5416-01 16 67183704 67183704 C T B3GNT9 Missense_Mutation p.D229N 0.13 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 67214067 67214067 G A KIAA0895L Silent p.D149D 0.23 TCGA-06-5416-01 16 67221372 67221372 G A EXOC3L1 Silent p.L266L 0.19 TCGA-06-5416-01 16 67262996 67262996 C T TMEM208 Missense_Mutation p.R168W 0.39 deleterious(0) unknown(0) TCGA-06-5416-01 16 67318812 67318812 C T PLEKHG4 Missense_Mutation p.A630V 0.48 tolerated(0.16) benign(0.014) TCGA-06-5416-01 16 67320708 67320708 T C PLEKHG4 Silent p.T937T 0.20 TCGA-06-5416-01 16 67400956 67400956 G A LRRC36 Missense_Mutation p.R264Q 0.42 deleterious(0.03) benign(0.082) TCGA-06-5416-01 16 67424460 67424460 C A TPPP3 Missense_Mutation p.K88N 0.20 deleterious(0) probably_damaging(0.955) TCGA-06-5416-01 16 67477029 67477029 G A ATP6V0D1 Silent p.I178I 0.46 TCGA-06-5416-01 16 67487538 67487538 C T ATP6V0D1 Missense_Mutation p.D71N 0.38 tolerated(0.47) possibly_damaging(0.684) TCGA-06-5416-01 16 67574245 67574245 G A FAM65A Missense_Mutation p.E224K 0.36 deleterious(0.04) possibly_damaging(0.49) TCGA-06-5416-01 16 67574500 67574500 C T FAM65A Missense_Mutation p.R252C 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 67679466 67679466 C T RLTPR Missense_Mutation p.P22S 0.23 tolerated(0.06) benign(0.253) TCGA-06-5416-01 16 67681785 67681785 C T RLTPR Missense_Mutation p.A332V 0.20 tolerated(0.2) benign(0.001) TCGA-06-5416-01 16 67688097 67688097 G A RLTPR Missense_Mutation p.V1056M 0.50 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 16 67688108 67688108 C T RLTPR Silent p.G1059G 0.42 TCGA-06-5416-01 16 67709917 67709917 G A GFOD2 Missense_Mutation p.S100L 0.39 tolerated(0.14) benign(0.021) TCGA-06-5416-01 16 67719657 67719657 G A GFOD2 5'UTR 0.46 TCGA-06-5416-01 16 677391 677391 C T RAB40C Silent p.P205P 0.54 TCGA-06-5416-01 16 67854817 67854817 C T TSNAXIP1 Nonsense_Mutation p.R21* 0.22 TCGA-06-5416-01 16 67866375 67866375 G A CENPT Missense_Mutation p.R62C 0.12 tolerated(0.2) benign(0.003) TCGA-06-5416-01 16 67877279 67877279 G T THAP11 Missense_Mutation p.K274N 0.20 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 16 67913510 67913510 G A EDC4 Missense_Mutation p.E552K 0.43 tolerated(0.07) benign(0.163) TCGA-06-5416-01 16 67919746 67919746 G T NRN1L Missense_Mutation p.E67D 0.36 tolerated(1) benign(0.063) TCGA-06-5416-01 16 67943393 67943393 G T PSKH1 Missense_Mutation p.K247N 0.40 tolerated(0.69) possibly_damaging(0.76) TCGA-06-5416-01 16 67979051 67979051 G A SLC12A4 Silent p.D1037D 0.52 TCGA-06-5416-01 16 67979964 67979964 G A SLC12A4 Missense_Mutation p.R879C 0.48 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 67984954 67984954 G A SLC12A4 Missense_Mutation p.A438V 0.24 deleterious(0.01) benign(0.247) TCGA-06-5416-01 16 68056419 68056419 G T DDX28 Silent p.S229S 0.15 TCGA-06-5416-01 16 68056808 68056808 G A DDX28 Nonsense_Mutation p.R100* 0.31 TCGA-06-5416-01 16 68107995 68107995 G A DUS2 Missense_Mutation p.R290Q 0.39 tolerated(0.07) benign(0.273) TCGA-06-5416-01 16 68112758 68112758 C T DUS2 Nonsense_Mutation p.R451* 0.46 TCGA-06-5416-01 16 68160513 68160513 G T NFATC3 Missense_Mutation p.K467N 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 68266349 68266349 G A ESRP2 Silent p.I293I 0.19 TCGA-06-5416-01 16 68293670 68293670 G A PLA2G15 3'UTR 0.43 TCGA-06-5416-01 16 68324299 68324299 G A SLC7A6 Missense_Mutation p.G217E 0.17 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 16 68335044 68335044 G A SLC7A6 3'UTR 0.23 TCGA-06-5416-01 16 68363052 68363052 T A PRMT7 Missense_Mutation p.H122Q 0.17 deleterious(0.03) possibly_damaging(0.515) TCGA-06-5416-01 16 68386174 68386174 G A PRMT7 Silent p.P479P 0.22 TCGA-06-5416-01 16 68387439 68387439 C T PRMT7 Silent p.F540F 0.22 TCGA-06-5416-01 16 68405035 68405035 G A SMPD3 Silent p.S350S 0.40 TCGA-06-5416-01 16 68598338 68598338 G T ZFP90 Nonsense_Mutation p.E550* 0.20 TCGA-06-5416-01 16 68598588 68598588 G A ZFP90 Missense_Mutation p.R633Q 0.07 deleterious(0.02) possibly_damaging(0.667) TCGA-06-5416-01 16 68725711 68725711 G A CDH3 Silent p.E628E 0.46 TCGA-06-5416-01 16 68729734 68729734 C T CDH3 Missense_Mutation p.L730F 0.20 tolerated(0.44) benign(0.058) TCGA-06-5416-01 16 68842653 68842653 G A CDH1 Missense_Mutation p.A197T 0.39 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 16 68855985 68855985 G A CDH1 Missense_Mutation p.R598Q 0.21 tolerated(0.14) benign(0.096) TCGA-06-5416-01 16 68862129 68862129 G A CDH1 Silent p.E739E 0.19 TCGA-06-5416-01 16 69117516 69117516 C T TANGO6 Silent p.F1079F 0.33 TCGA-06-5416-01 16 69143722 69143722 G A HAS3 Missense_Mutation p.G142S 0.48 tolerated(0.43) benign(0.313) TCGA-06-5416-01 16 69149188 69149188 C T HAS3 3'UTR 0.24 TCGA-06-5416-01 16 69155019 69155019 G A CHTF8 Silent p.I26I 0.41 TCGA-06-5416-01 16 69334772 69334772 T G SNTB2 Missense_Mutation p.F523C 0.47 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 16 69368459 69368459 C A RP11-343C2.12 Missense_Mutation p.D106Y 0.40 deleterious(0.01) possibly_damaging(0.659) TCGA-06-5416-01 16 69370596 69370596 C T COG8 Missense_Mutation p.E133K 0.35 tolerated(0.23) benign(0.112) TCGA-06-5416-01 16 69381794 69381794 G T TMED6 Missense_Mutation p.S129Y 0.42 tolerated(0.47) possibly_damaging(0.73) TCGA-06-5416-01 16 69385606 69385606 C T TMED6 Silent p.T17T 0.18 TCGA-06-5416-01 16 69400774 69400774 C T TERF2 Missense_Mutation p.A384T 0.35 tolerated(0.21) benign(0.001) TCGA-06-5416-01 16 69402289 69402289 C A TERF2 Nonsense_Mutation p.E271* 0.22 TCGA-06-5416-01 16 69724972 69724972 G A NFAT5 Missense_Mutation p.R635K 0.33 benign(0.002) TCGA-06-5416-01 16 69726008 69726008 G A NFAT5 Silent p.Q760Q 0.21 TCGA-06-5416-01 16 69727927 69727927 C T NFAT5 Missense_Mutation p.S1400F 0.19 probably_damaging(0.996) TCGA-06-5416-01 16 69727969 69727969 C A NFAT5 Missense_Mutation p.S1414Y 0.19 possibly_damaging(0.701) TCGA-06-5416-01 16 69729055 69729055 A C NFAT5 Missense_Mutation p.L1477F 0.20 probably_damaging(0.997) TCGA-06-5416-01 16 69729174 69729174 C A NFAT5 Missense_Mutation p.S1517Y 0.24 possibly_damaging(0.486) TCGA-06-5416-01 16 70020402 70020402 G T PDXDC2P RNA 0.45 TCGA-06-5416-01 16 70029986 70029986 C T PDXDC2P RNA 0.24 TCGA-06-5416-01 16 70187403 70187403 T C PDPR Missense_Mutation p.F721S 0.12 deleterious(0.03) possibly_damaging(0.863) TCGA-06-5416-01 16 70305774 70305774 C T AARS Missense_Mutation p.R194Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 70506973 70506973 G T FUK Missense_Mutation p.R498S 0.15 tolerated(0.19) benign(0.009) TCGA-06-5416-01 16 70524261 70524261 T C COG4 Missense_Mutation p.N561S 0.05 tolerated(0.34) benign(0.099) TCGA-06-5416-01 16 70546161 70546161 G A COG4 Missense_Mutation p.S240L 0.22 tolerated(0.06) benign(0.029) TCGA-06-5416-01 16 70551549 70551549 G A COG4 Missense_Mutation p.R117C 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 70805911 70805911 G A VAC14 Intron 0.45 TCGA-06-5416-01 16 70841641 70841641 G A HYDIN Missense_Mutation p.R5070W 0.26 probably_damaging(0.942) TCGA-06-5416-01 16 70841825 70841825 G A HYDIN Silent p.L5008L 0.18 TCGA-06-5416-01 16 70841876 70841876 G A HYDIN Silent p.F4991F 0.45 TCGA-06-5416-01 16 70897082 70897082 G A HYDIN Silent p.F3825F 0.26 TCGA-06-5416-01 16 70908296 70908296 T C HYDIN Silent p.G3620G 0.23 TCGA-06-5416-01 16 70916707 70916707 G A HYDIN Silent p.S3357S 0.23 TCGA-06-5416-01 16 70917899 70917899 G A HYDIN Silent p.I3301I 0.42 TCGA-06-5416-01 16 70926302 70926302 C A HYDIN Nonsense_Mutation p.E3127* 0.11 TCGA-06-5416-01 16 70954979 70954979 G A HYDIN Missense_Mutation p.L2434F 0.38 probably_damaging(0.986) TCGA-06-5416-01 16 71061452 71061452 G T HYDIN Intron 0.20 TCGA-06-5416-01 16 71423697 71423697 T C CALB2 Missense_Mutation p.S249P 0.49 tolerated(0.17) benign(0.333) TCGA-06-5416-01 16 71509099 71509099 C A ZNF19 Nonsense_Mutation p.E451* 0.19 TCGA-06-5416-01 16 71509236 71509236 C A ZNF19 Missense_Mutation p.R405I 0.18 deleterious(0) benign(0.016) TCGA-06-5416-01 16 71674429 71674429 C T MARVELD3 Silent p.F244F 0.39 TCGA-06-5416-01 16 71779500 71779500 C A AP1G1 Missense_Mutation p.R586I 0.18 deleterious(0) possibly_damaging(0.74) TCGA-06-5416-01 16 71949604 71949604 C T IST1 Missense_Mutation p.R34C 0.37 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 72046106 72046106 G A DHODH Missense_Mutation p.R60H 0.16 tolerated(0.6) benign(0.001) TCGA-06-5416-01 16 72055102 72055102 C T DHODH Silent p.R199R 0.31 TCGA-06-5416-01 16 72110471 72110471 C A HPR Missense_Mutation p.L180I 0.43 tolerated(0.65) benign(0.17) TCGA-06-5416-01 16 72110569 72110569 G T HPR Missense_Mutation p.K212N 0.23 tolerated(0.12) possibly_damaging(0.876) TCGA-06-5416-01 16 72110657 72110657 A G HPR Missense_Mutation p.M242V 0.23 tolerated(0.21) benign(0.069) TCGA-06-5416-01 16 72130106 72130106 A G DHX38 Missense_Mutation p.D17G 0.28 deleterious_low_confidence(0.04) benign(0.004) TCGA-06-5416-01 16 72130354 72130354 G A DHX38 Missense_Mutation p.A100T 0.11 tolerated(0.59) benign(0.004) TCGA-06-5416-01 16 72156821 72156821 G A PMFBP1 Silent p.G920G 0.27 TCGA-06-5416-01 16 72159237 72159237 G T PMFBP1 Missense_Mutation p.A774D 0.44 deleterious(0.01) possibly_damaging(0.499) TCGA-06-5416-01 16 72184567 72184567 G A PMFBP1 Silent p.I192I 0.48 TCGA-06-5416-01 16 72822068 72822068 C A ZFHX3 Missense_Mutation p.Q3369H 0.24 unknown(0) TCGA-06-5416-01 16 72822232 72822232 A C ZFHX3 Missense_Mutation p.F3315V 0.46 unknown(0) TCGA-06-5416-01 16 72828699 72828699 C T ZFHX3 Missense_Mutation p.E2628K 0.23 unknown(0) TCGA-06-5416-01 16 72829348 72829348 C T ZFHX3 Silent p.A2411A 0.17 TCGA-06-5416-01 16 72984678 72984678 C T ZFHX3 Missense_Mutation p.R969H 0.22 probably_damaging(0.991) TCGA-06-5416-01 16 72993361 72993361 C T ZFHX3 Silent p.L228L 0.18 TCGA-06-5416-01 16 737683 737683 C T WDR24 Missense_Mutation p.A180T 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 74443776 74443776 C T CLEC18B Silent p.G404G 0.07 TCGA-06-5416-01 16 74524940 74524940 G A GLG1 Nonsense_Mutation p.R470* 0.16 TCGA-06-5416-01 16 74664724 74664724 C T RFWD3 Missense_Mutation p.R570Q 0.40 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 74683056 74683056 C T RFWD3 Missense_Mutation p.D256N 0.14 tolerated(0.39) benign(0.001) TCGA-06-5416-01 16 74729316 74729316 G T MLKL Missense_Mutation p.L114M 0.04 deleterious(0.03) possibly_damaging(0.829) TCGA-06-5416-01 16 74761225 74761225 G A FA2H Silent p.Y141Y 0.50 TCGA-06-5416-01 16 74943546 74943546 C T WDR59 Missense_Mutation p.D499N 0.17 deleterious(0.03) benign(0.126) TCGA-06-5416-01 16 74957899 74957899 G T WDR59 Missense_Mutation p.F218L 0.33 deleterious(0.02) probably_damaging(0.971) TCGA-06-5416-01 16 75148824 75148824 C A LDHD Nonsense_Mutation p.E124* 0.45 TCGA-06-5416-01 16 75203198 75203198 G A ZFP1 Missense_Mutation p.D64N 0.45 tolerated(0.06) benign(0.146) TCGA-06-5416-01 16 75203634 75203634 A G ZFP1 Missense_Mutation p.E209G 0.44 deleterious(0) probably_damaging(0.943) TCGA-06-5416-01 16 75512908 75512908 G A CHST6 Silent p.F273F 0.39 TCGA-06-5416-01 16 75573873 75573873 G T TMEM231 3'UTR 0.20 TCGA-06-5416-01 16 75646363 75646363 G A ADAT1 Missense_Mutation p.P274L 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 16 75681808 75681808 G T TERF2IP Missense_Mutation p.D10Y 0.14 deleterious(0) possibly_damaging(0.902) TCGA-06-5416-01 16 75690278 75690278 G T TERF2IP Missense_Mutation p.E323D 0.23 deleterious(0.01) probably_damaging(0.955) TCGA-06-5416-01 16 75690487 75690487 G T TERF2IP Missense_Mutation p.R393M 0.06 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 16 76350260 76350260 G A CNTNAP4 Intron 0.33 TCGA-06-5416-01 16 76532528 76532528 G T CNTNAP4 Missense_Mutation p.D695Y 0.48 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 16 76569572 76569572 C T CNTNAP4 Silent p.C889C 0.23 TCGA-06-5416-01 16 77229535 77229535 C T MON1B Missense_Mutation p.R467C 0.24 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 16 77325241 77325241 C A ADAMTS18 Missense_Mutation p.E1108D 0.42 deleterious(0.04) possibly_damaging(0.777) TCGA-06-5416-01 16 77389861 77389861 C T ADAMTS18 Missense_Mutation p.R479H 0.19 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 16 77396073 77396073 C A ADAMTS18 Missense_Mutation p.R382I 0.20 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 16 77465483 77465483 T G ADAMTS18 Missense_Mutation p.E68D 0.23 deleterious(0.01) probably_damaging(0.948) TCGA-06-5416-01 16 774935 774935 C T CCDC78 Silent p.G205G 0.58 TCGA-06-5416-01 16 77859162 77859162 C T VAT1L Missense_Mutation p.A128V 0.17 tolerated(0.59) possibly_damaging(0.615) TCGA-06-5416-01 16 77859226 77859226 C T VAT1L Silent p.I149I 0.22 TCGA-06-5416-01 16 779081 779081 C T HAGHL Missense_Mutation p.R225W 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 78062023 78062023 G T CLEC3A Missense_Mutation p.K54N 0.21 deleterious(0) possibly_damaging(0.822) TCGA-06-5416-01 16 80583412 80583412 A G DYNLRB2 Silent p.S37S 0.22 TCGA-06-5416-01 16 80584482 80584482 C T DYNLRB2 3'UTR 0.22 TCGA-06-5416-01 16 81010030 81010030 C T CMC2 Missense_Mutation p.R67Q 0.23 tolerated(0.23) benign(0.159) TCGA-06-5416-01 16 81051405 81051405 C T CENPN Missense_Mutation p.S107L 0.37 tolerated(0.06) benign(0.077) TCGA-06-5416-01 16 81076922 81076922 C T ATMIN Silent p.D273D 0.42 TCGA-06-5416-01 16 81087586 81087586 C A RP11-303E16.5 5'Flank 0.20 TCGA-06-5416-01 16 81167278 81167278 C T PKD1L2 RNA 0.26 TCGA-06-5416-01 16 81175102 81175102 C T PKD1L2 RNA 0.19 TCGA-06-5416-01 16 81198326 81198326 C T PKD1L2 RNA 0.45 TCGA-06-5416-01 16 81204673 81204673 C T PKD1L2 3'Flank 0.19 TCGA-06-5416-01 16 81224283 81224283 G A PKD1L2 Missense_Mutation p.A81V 0.18 tolerated(0.19) benign(0.006) TCGA-06-5416-01 16 812729 812729 G A MSLN Missense_Mutation p.A17T 0.18 tolerated(0.58) benign(0.018) TCGA-06-5416-01 16 81296007 81296007 C T BCMO1 Intron 0.55 TCGA-06-5416-01 16 81320985 81320985 C T BCMO1 Missense_Mutation p.A463V 0.47 tolerated(0.58) benign(0.005) TCGA-06-5416-01 16 81390581 81390581 C T GAN Silent p.I275I 0.45 TCGA-06-5416-01 16 81391485 81391485 G A GAN Missense_Mutation p.E308K 0.22 tolerated(0.07) benign(0.005) TCGA-06-5416-01 16 816450 816450 C T MSLN Missense_Mutation p.A397V 0.16 tolerated(0.12) possibly_damaging(0.525) TCGA-06-5416-01 16 81725384 81725384 G T CMIP Missense_Mutation p.D465Y 0.12 deleterious(0) possibly_damaging(0.556) TCGA-06-5416-01 16 81743393 81743393 G A CMIP Missense_Mutation p.E771K 0.43 deleterious(0.02) benign(0.058) TCGA-06-5416-01 16 818692 818692 C A MSLN Missense_Mutation p.L618I 0.44 tolerated(0.09) unknown(0) TCGA-06-5416-01 16 81888179 81888179 G A PLCG2 Silent p.T108T 0.43 TCGA-06-5416-01 16 81892762 81892762 G T PLCG2 Missense_Mutation p.R158I 0.35 deleterious(0.03) benign(0.193) TCGA-06-5416-01 16 81922807 81922807 C T PLCG2 Missense_Mutation p.R266C 0.50 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 16 81925085 81925085 G A PLCG2 Silent p.T292T 0.24 TCGA-06-5416-01 16 81939065 81939065 G A PLCG2 Missense_Mutation p.E474K 0.14 tolerated(0.6) benign(0.022) TCGA-06-5416-01 16 81969848 81969848 G A PLCG2 Missense_Mutation p.D973N 0.44 tolerated(0.43) benign(0.38) TCGA-06-5416-01 16 81973583 81973583 T G PLCG2 Missense_Mutation p.F1134V 0.20 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 16 82032806 82032806 C T SDR42E1 Silent p.S364S 0.25 TCGA-06-5416-01 16 820889 820889 C T MSLNL Silent p.E832E 0.30 TCGA-06-5416-01 16 83781718 83781718 C A CDH13 Missense_Mutation p.S562Y 0.19 deleterious(0) possibly_damaging(0.898) TCGA-06-5416-01 16 83994191 83994191 C T OSGIN1 Silent p.S74S 0.15 TCGA-06-5416-01 16 84024175 84024175 C T NECAB2 Missense_Mutation p.S179L 0.19 deleterious(0) benign(0.246) TCGA-06-5416-01 16 84092952 84092952 C T MBTPS1 Missense_Mutation p.R929H 0.46 tolerated(0.35) benign(0) TCGA-06-5416-01 16 84103531 84103531 C T MBTPS1 Missense_Mutation p.R632H 0.44 deleterious(0.05) probably_damaging(0.931) TCGA-06-5416-01 16 84158279 84158279 G T HSDL1 Missense_Mutation p.L317I 0.50 tolerated(0.16) benign(0.021) TCGA-06-5416-01 16 84199422 84199422 C T DNAAF1 Silent p.Y299Y 0.19 TCGA-06-5416-01 16 84209881 84209881 G A DNAAF1 Missense_Mutation p.D681N 0.33 tolerated(0.34) benign(0) TCGA-06-5416-01 16 84211509 84211509 A C DNAAF1 3'UTR 0.51 TCGA-06-5416-01 16 84879564 84879564 G A CRISPLD2 Intron 0.50 TCGA-06-5416-01 16 84902464 84902464 C T CRISPLD2 Silent p.V287V 0.12 TCGA-06-5416-01 16 84914181 84914181 C A CRISPLD2 Silent p.I432I 0.17 TCGA-06-5416-01 16 85015570 85015570 C A ZDHHC7 Nonsense_Mutation p.E153* 0.44 TCGA-06-5416-01 16 85135884 85135884 G A FAM92B Missense_Mutation p.A196V 0.21 deleterious(0.01) possibly_damaging(0.899) TCGA-06-5416-01 16 855463 855463 G A PRR25 Silent p.K7K 0.18 TCGA-06-5416-01 16 85701792 85701792 G A GSE1 Silent p.T1059T 0.20 TCGA-06-5416-01 16 85814039 85814039 G A EMC8 Missense_Mutation p.T140M 0.51 deleterious(0.03) possibly_damaging(0.484) TCGA-06-5416-01 16 85952291 85952291 G A IRF8 Silent p.K290K 0.24 TCGA-06-5416-01 16 85955075 85955075 G A IRF8 3'UTR 0.31 TCGA-06-5416-01 16 86585656 86585656 G A MTHFSD Missense_Mutation p.R74W 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 16 87365066 87365066 C T FBXO31 Missense_Mutation p.R483H 0.25 tolerated(0.08) benign(0.276) TCGA-06-5416-01 16 87369851 87369851 C A FBXO31 Missense_Mutation p.R251M 0.18 deleterious(0.02) possibly_damaging(0.635) TCGA-06-5416-01 16 87432450 87432450 C T MAP1LC3B Nonsense_Mutation p.R24* 0.42 TCGA-06-5416-01 16 87443745 87443745 G T ZCCHC14 3'UTR 0.13 TCGA-06-5416-01 16 87443839 87443839 C T ZCCHC14 3'UTR 0.44 TCGA-06-5416-01 16 87446217 87446217 C T ZCCHC14 Missense_Mutation p.A567T 0.26 tolerated_low_confidence(0.78) benign(0.005) TCGA-06-5416-01 16 87452501 87452501 C T ZCCHC14 Missense_Mutation p.G214D 0.30 tolerated(0.15) probably_damaging(0.948) TCGA-06-5416-01 16 87717759 87717759 C A JPH3 Missense_Mutation p.S391Y 0.46 deleterious(0) possibly_damaging(0.862) TCGA-06-5416-01 16 87723298 87723298 C T JPH3 Silent p.I444I 0.64 TCGA-06-5416-01 16 87760377 87760377 C T KLHDC4 Silent p.S251S 0.46 TCGA-06-5416-01 16 87921761 87921761 C T CA5A Missense_Mutation p.A298T 0.20 tolerated(0.09) benign(0.001) TCGA-06-5416-01 16 87969963 87969963 G A CA5A Nonsense_Mutation p.R32* 0.39 TCGA-06-5416-01 16 88068952 88068952 C T BANP Silent p.I397I 0.16 TCGA-06-5416-01 16 88110205 88110205 G T BANP Missense_Mutation p.A500S 0.24 tolerated_low_confidence(0.63) benign(0.001) TCGA-06-5416-01 16 8839893 8839893 G A ABAT Missense_Mutation p.D36N 0.19 tolerated(0.34) benign(0.004) TCGA-06-5416-01 16 88725118 88725118 G A MVD Silent p.R27R 0.18 TCGA-06-5416-01 16 88752749 88752749 C T SNAI3 Silent p.E22E 0.45 TCGA-06-5416-01 16 88778074 88778074 G A CTU2 Missense_Mutation p.R105H 0.52 deleterious(0) probably_damaging(0.935) TCGA-06-5416-01 16 8890300 8890300 C T TMEM186 Missense_Mutation p.A51T 0.21 tolerated(0.67) benign(0.001) TCGA-06-5416-01 16 88931983 88931983 G T PABPN1L Silent p.V149V 0.41 TCGA-06-5416-01 16 88958317 88958317 C G CBFA2T3 Silent p.L228L 0.11 TCGA-06-5416-01 16 89178544 89178544 C A ACSF3 Silent p.V289V 0.42 TCGA-06-5416-01 16 89251691 89251691 G A CDH15 Missense_Mutation p.D205N 0.44 tolerated(1) benign(0.02) TCGA-06-5416-01 16 89294121 89294121 A C ZNF778 Missense_Mutation p.K447N 0.07 deleterious(0.02) possibly_damaging(0.881) TCGA-06-5416-01 16 89347769 89347769 G A ANKRD11 Silent p.C1727C 0.44 TCGA-06-5416-01 16 89347980 89347980 G A ANKRD11 Missense_Mutation p.S1657L 0.21 benign(0.001) TCGA-06-5416-01 16 89351318 89351318 C T ANKRD11 Silent p.K544K 0.44 TCGA-06-5416-01 16 89351737 89351737 G A ANKRD11 Missense_Mutation p.R405C 0.49 probably_damaging(0.973) TCGA-06-5416-01 16 89758285 89758285 C A CDK10 Nonsense_Mutation p.S136* 0.23 TCGA-06-5416-01 16 89767499 89767499 C T SPATA2L Missense_Mutation p.A48T 0.53 tolerated(0.09) benign(0.117) TCGA-06-5416-01 16 89805442 89805442 T C FANCA Intron 0.41 TCGA-06-5416-01 16 89807223 89807223 G T FANCA Missense_Mutation p.L1273M 0.23 deleterious(0) possibly_damaging(0.887) TCGA-06-5416-01 16 89849300 89849300 G A FANCA Silent p.Y531Y 0.19 TCGA-06-5416-01 16 8992403 8992403 T G USP7 Missense_Mutation p.K875N 0.21 deleterious(0.01) possibly_damaging(0.888) TCGA-06-5416-01 16 8994477 8994477 G A USP7 Missense_Mutation p.P740L 0.17 tolerated(0.1) benign(0.17) TCGA-06-5416-01 16 89965057 89965057 G T TCF25 Missense_Mutation p.S372I 0.13 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 16 89977031 89977031 C T TCF25 Missense_Mutation p.A611V 0.47 deleterious(0) benign(0.065) TCGA-06-5416-01 16 89985771 89985771 C T MC1R Silent p.C35C 0.09 TCGA-06-5416-01 16 89986545 89986545 C T MC1R Silent p.I293I 0.20 TCGA-06-5416-01 16 8999095 8999095 G A USP7 Nonsense_Mutation p.R508* 0.21 TCGA-06-5416-01 16 90001447 90001447 G A TUBB3 Silent p.T196T 0.24 TCGA-06-5416-01 16 90029778 90029778 G A DEF8 Missense_Mutation p.R371H 0.31 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 16 90128439 90128439 G A PRDM7 Missense_Mutation p.L258F 0.19 deleterious(0.04) probably_damaging(0.942) TCGA-06-5416-01 16 90128647 90128647 C A PRDM7 Intron 0.57 TCGA-06-5416-01 16 984276 984276 G A LMF1 Intron 0.14 TCGA-06-5416-01 16 9857021 9857021 G A GRIN2A Silent p.I1460I 0.16 TCGA-06-5416-01 16 9858099 9858099 A G GRIN2A Missense_Mutation p.V1101A 0.22 tolerated(0.11) benign(0.009) TCGA-06-5416-01 16 9943746 9943746 A G GRIN2A Missense_Mutation p.C399R 0.21 tolerated(0.06) benign(0.048) TCGA-06-5416-01 16 9943780 9943780 G A GRIN2A Silent p.H387H 0.47 TCGA-06-5416-01 17 10206738 10206738 T C MYH13 Silent p.E1848E 0.47 TCGA-06-5416-01 17 10209889 10209889 G A MYH13 Missense_Mutation p.R1785W 0.18 deleterious(0) possibly_damaging(0.869) TCGA-06-5416-01 17 10216011 10216011 G A MYH13 Silent p.C1415C 0.48 TCGA-06-5416-01 17 10216614 10216614 G A MYH13 Missense_Mutation p.R1348W 0.21 deleterious(0) probably_damaging(0.931) TCGA-06-5416-01 17 10223517 10223517 C T MYH13 Missense_Mutation p.E1101K 0.37 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 17 10224848 10224848 C T MYH13 Splice_Site p.X1037_splice 0.17 TCGA-06-5416-01 17 10233779 10233779 G A MYH13 Missense_Mutation p.T787M 0.21 deleterious(0.02) benign(0.004) TCGA-06-5416-01 17 10235459 10235459 G A MYH13 Missense_Mutation p.S752F 0.20 deleterious(0.04) possibly_damaging(0.635) TCGA-06-5416-01 17 10258004 10258004 G A MYH13 Missense_Mutation p.A333V 0.26 deleterious(0.01) benign(0.006) TCGA-06-5416-01 17 10267752 10267752 G A MYH13 Silent p.F32F 0.28 TCGA-06-5416-01 17 10295235 10295235 C T MYH8 Silent p.A1876A 0.17 TCGA-06-5416-01 17 10299893 10299893 C A MYH8 Missense_Mutation p.R1502I 0.18 deleterious(0) benign(0.107) TCGA-06-5416-01 17 10314153 10314153 C T MYH8 Missense_Mutation p.E510K 0.45 deleterious(0.02) benign(0.018) TCGA-06-5416-01 17 10315713 10315713 C T MYH8 Missense_Mutation p.D464N 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 10317773 10317773 G A MYH8 Silent p.F278F 0.27 TCGA-06-5416-01 17 10323547 10323547 C T MYH8 5'UTR 0.40 TCGA-06-5416-01 17 10358513 10358513 G A MYH4 Silent p.T758T 0.43 TCGA-06-5416-01 17 10395671 10395671 G A MYH1 3'UTR 0.20 TCGA-06-5416-01 17 10406107 10406107 T G MYH1 Missense_Mutation p.K1020T 0.43 deleterious(0) possibly_damaging(0.881) TCGA-06-5416-01 17 10408298 10408298 G A MYH1 Silent p.I840I 0.20 TCGA-06-5416-01 17 10411713 10411713 G T MYH1 Missense_Mutation p.L622I 0.43 tolerated(0.39) benign(0.001) TCGA-06-5416-01 17 10426690 10426690 G A MYH2 Missense_Mutation p.R1838C 0.43 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 17 10427847 10427847 C A MYH2 Missense_Mutation p.S1704I 0.23 deleterious(0.02) possibly_damaging(0.571) TCGA-06-5416-01 17 10429120 10429120 C T MYH2 Missense_Mutation p.E1421K 0.46 deleterious(0) probably_damaging(0.937) TCGA-06-5416-01 17 10431116 10431116 G A MYH2 Missense_Mutation p.R1274W 0.19 deleterious(0.01) probably_damaging(0.988) TCGA-06-5416-01 17 10432191 10432191 G A MYH2 Missense_Mutation p.A1187V 0.24 deleterious(0.01) benign(0.108) TCGA-06-5416-01 17 10441078 10441078 G A MYH2 Silent p.F497F 0.49 TCGA-06-5416-01 17 10541369 10541369 C T MYH3 Silent p.S1240S 0.46 TCGA-06-5416-01 17 10546202 10546202 C T MYH3 Missense_Mutation p.E508K 0.21 deleterious(0.01) benign(0.267) TCGA-06-5416-01 17 10608494 10608494 A C ADPRM Missense_Mutation p.N84T 0.24 tolerated(0.33) benign(0.09) TCGA-06-5416-01 17 11515034 11515034 C A DNAH9 Missense_Mutation p.L281M 0.41 probably_damaging(0.981) TCGA-06-5416-01 17 11515147 11515147 C T DNAH9 Intron 0.18 TCGA-06-5416-01 17 11593168 11593168 C T DNAH9 Silent p.I1343I 0.22 TCGA-06-5416-01 17 11648122 11648122 C T DNAH9 Silent p.Y2040Y 0.15 TCGA-06-5416-01 17 11648356 11648356 G A DNAH9 Silent p.A2118A 0.25 TCGA-06-5416-01 17 11666891 11666891 C T DNAH9 Missense_Mutation p.A2377V 0.53 possibly_damaging(0.476) TCGA-06-5416-01 17 11671910 11671910 C T DNAH9 Silent p.P2437P 0.18 TCGA-06-5416-01 17 11701103 11701103 C T DNAH9 Missense_Mutation p.R2805C 0.42 benign(0.005) TCGA-06-5416-01 17 11757670 11757670 C T DNAH9 Silent p.R3286R 0.40 TCGA-06-5416-01 17 11786906 11786906 G A DNAH9 Missense_Mutation p.D3604N 0.38 benign(0.02) TCGA-06-5416-01 17 11809126 11809126 G A DNAH9 Missense_Mutation p.G3917R 0.42 probably_damaging(0.999) TCGA-06-5416-01 17 11837296 11837296 G T DNAH9 Nonsense_Mutation p.E4133* 0.19 TCGA-06-5416-01 17 11895960 11895960 G A ZNF18 Missense_Mutation p.R63W 0.22 tolerated(0.1) probably_damaging(0.944) TCGA-06-5416-01 17 12044628 12044628 G A MAP2K4 3'UTR 0.17 TCGA-06-5416-01 17 1264453 1264453 A C YWHAE Missense_Mutation p.L171V 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 17 12649359 12649359 C T MYOCD Silent p.G365G 0.19 TCGA-06-5416-01 17 12655862 12655862 G A MYOCD Silent p.T419T 0.18 TCGA-06-5416-01 17 12656371 12656371 G T MYOCD Missense_Mutation p.R589I 0.20 tolerated(0.21) benign(0.009) TCGA-06-5416-01 17 1268170 1268170 G A YWHAE Missense_Mutation p.R83W 0.44 tolerated_low_confidence(0.09) benign(0.014) TCGA-06-5416-01 17 12847457 12847457 G A ARHGAP44 Missense_Mutation p.A269T 0.22 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 17 12893427 12893427 G A ARHGAP44 Missense_Mutation p.R799Q 0.22 tolerated_low_confidence(0.14) benign(0.001) TCGA-06-5416-01 17 131561 131561 C A RPH3AL Nonsense_Mutation p.E146* 0.42 TCGA-06-5416-01 17 1340133 1340133 G A CRK Silent p.Y186Y 0.23 TCGA-06-5416-01 17 13503918 13503918 C A HS3ST3A1 Missense_Mutation p.D177Y 0.19 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 17 1375478 1375478 G A MYO1C Silent p.I614I 0.18 TCGA-06-5416-01 17 1456314 1456314 T C PITPNA Missense_Mutation p.I61V 0.17 tolerated(0.27) benign(0.028) TCGA-06-5416-01 17 15234507 15234507 A G TEKT3 Silent p.Y132Y 0.46 TCGA-06-5416-01 17 1548472 1548472 G A SCARF1 Missense_Mutation p.P55S 0.34 deleterious(0.01) benign(0.279) TCGA-06-5416-01 17 15492481 15492481 G A CDRT1 Silent p.I689I 0.39 TCGA-06-5416-01 17 1549765 1549765 G T RILP Missense_Mutation p.L393M 0.21 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-06-5416-01 17 15499882 15499882 G A RP11-385D13.1 Silent p.S860S 0.31 TCGA-06-5416-01 17 15501880 15501880 C T RP11-385D13.1 Silent p.R817R 0.35 TCGA-06-5416-01 17 15502067 15502067 G T CDRT1 Intron 0.15 TCGA-06-5416-01 17 15532074 15532074 G T TRIM16 Missense_Mutation p.T517N 0.45 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 17 1553983 1553983 A G PRPF8 3'UTR 0.21 TCGA-06-5416-01 17 15609718 15609718 G T ZNF286A Missense_Mutation p.K48N 0.21 deleterious(0.04) possibly_damaging(0.562) TCGA-06-5416-01 17 15619331 15619331 G A ZNF286A Intron 0.36 TCGA-06-5416-01 17 1564587 1564587 C T PRPF8 Missense_Mutation p.R1439K 0.41 tolerated(0.05) benign(0.071) TCGA-06-5416-01 17 1577151 1577151 C T PRPF8 Missense_Mutation p.R1112H 0.20 deleterious(0) benign(0.41) TCGA-06-5416-01 17 1580894 1580894 C T PRPF8 Missense_Mutation p.R650Q 0.48 deleterious(0.05) probably_damaging(1) TCGA-06-5416-01 17 1585309 1585309 C T PRPF8 Missense_Mutation p.R153Q 0.24 deleterious(0.01) probably_damaging(0.96) TCGA-06-5416-01 17 1586873 1586873 C A PRPF8 Missense_Mutation p.D75Y 0.17 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 17 15909852 15909852 G A TTC19 Missense_Mutation p.E216K 0.14 deleterious(0.03) benign(0.358) TCGA-06-5416-01 17 15971392 15971392 C T NCOR1 Silent p.S1519S 0.39 TCGA-06-5416-01 17 16005012 16005012 C A NCOR1 Nonsense_Mutation p.E748* 0.43 TCGA-06-5416-01 17 16029456 16029457 - T NCOR1 Frame_Shift_Ins p.T525Nfs*11 0.30 TCGA-06-5416-01 17 16075295 16075295 C A NCOR1 Missense_Mutation p.R86I 0.23 probably_damaging(0.965) TCGA-06-5416-01 17 16120521 16120521 C T NCOR1 5'Flank 0.48 TCGA-06-5416-01 17 16248007 16248007 T C CENPV Missense_Mutation p.T200A 0.40 deleterious(0.01) possibly_damaging(0.561) TCGA-06-5416-01 17 16285230 16285230 C A UBB Silent p.I3I 0.20 TCGA-06-5416-01 17 16285695 16285695 G T UBB Missense_Mutation p.K158N 0.40 deleterious(0.02) benign(0.335) TCGA-06-5416-01 17 16325987 16325987 C T TRPV2 Missense_Mutation p.P137S 0.20 tolerated(0.4) possibly_damaging(0.607) TCGA-06-5416-01 17 16326993 16326993 G A TRPV2 Missense_Mutation p.R279H 0.21 deleterious(0.01) benign(0.017) TCGA-06-5416-01 17 16327026 16327026 G A TRPV2 Missense_Mutation p.R290H 0.26 tolerated(0.16) benign(0.076) TCGA-06-5416-01 17 16347433 16347433 G T FAM211A Silent p.V168V 0.35 TCGA-06-5416-01 17 16455148 16455148 G A ZNF287 3'UTR 0.17 TCGA-06-5416-01 17 16455799 16455799 G A ZNF287 Nonsense_Mutation p.R553* 0.45 TCGA-06-5416-01 17 16527167 16527167 A C ZNF624 Missense_Mutation p.S345A 0.21 tolerated(0.14) probably_damaging(0.952) TCGA-06-5416-01 17 16537208 16537208 G A ZNF624 Missense_Mutation p.T115M 0.24 tolerated(0.27) benign(0) TCGA-06-5416-01 17 16593993 16593993 C T CCDC144A Silent p.V93V 0.20 TCGA-06-5416-01 17 16612451 16612451 A G CCDC144A Silent p.T360T 0.17 TCGA-06-5416-01 17 16612637 16612637 T C CCDC144A Silent p.H422H 0.42 TCGA-06-5416-01 17 16667458 16667458 C A CCDC144A Missense_Mutation p.A1356D 0.18 deleterious_low_confidence(0.01) benign(0.186) TCGA-06-5416-01 17 16721470 16721470 G A AC022596.6 RNA 0.36 TCGA-06-5416-01 17 16723972 16723972 C T AC022596.6 RNA 0.26 TCGA-06-5416-01 17 16725329 16725329 C A AC022596.6 RNA 0.35 TCGA-06-5416-01 17 16725685 16725685 C T AC022596.6 RNA 0.29 TCGA-06-5416-01 17 1679891 1679891 G T SERPINF1 Missense_Mutation p.Q284H 0.46 deleterious(0.02) probably_damaging(0.941) TCGA-06-5416-01 17 16852132 16852132 C T TNFRSF13B Missense_Mutation p.R122Q 0.42 tolerated(0.76) benign(0.015) TCGA-06-5416-01 17 16981370 16981370 C T MPRIP Missense_Mutation p.R83C 0.44 deleterious(0.05) probably_damaging(0.999) TCGA-06-5416-01 17 17425665 17425665 G A PEMT Silent p.F83F 0.15 TCGA-06-5416-01 17 17699579 17699579 C T RAI1 Missense_Mutation p.A1106V 0.37 tolerated(1) benign(0.017) TCGA-06-5416-01 17 17712754 17712754 G A RAI1 Splice_Site p.X1903_splice 0.20 TCGA-06-5416-01 17 17716709 17716709 G A SREBF1 Missense_Mutation p.R1093W 0.28 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 17 17907724 17907724 G T LRRC48 Missense_Mutation p.K349N 0.14 tolerated(0.34) benign(0.063) TCGA-06-5416-01 17 17929644 17929644 G A ATPAF2 Silent p.T137T 0.20 TCGA-06-5416-01 17 18023207 18023207 G A MYO15A Missense_Mutation p.D365N 0.42 possibly_damaging(0.555) TCGA-06-5416-01 17 18036680 18036680 G A MYO15A Missense_Mutation p.V1488I 0.15 unknown(0) TCGA-06-5416-01 17 18041529 18041529 G A MYO15A Missense_Mutation p.R1659Q 0.22 unknown(0) TCGA-06-5416-01 17 18049236 18049236 C A MYO15A Silent p.I2108I 0.22 TCGA-06-5416-01 17 18053774 18053774 G A MYO15A Missense_Mutation p.R2415H 0.20 unknown(0) TCGA-06-5416-01 17 18069817 18069817 G A MYO15A Silent p.V3310V 0.43 TCGA-06-5416-01 17 18077138 18077138 G A MYO15A Missense_Mutation p.R3465Q 0.17 unknown(0) TCGA-06-5416-01 17 18087891 18087891 T C ALKBH5 Missense_Mutation p.S112P 0.15 tolerated(0.14) possibly_damaging(0.464) TCGA-06-5416-01 17 18141488 18141488 G A LLGL1 Missense_Mutation p.R671H 0.23 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 17 18150098 18150098 T C FLII Missense_Mutation p.D954G 0.40 tolerated(0.36) benign(0) TCGA-06-5416-01 17 18181578 18181578 C A TOP3A Missense_Mutation p.E746D 0.45 tolerated(0.08) benign(0.027) TCGA-06-5416-01 17 18220174 18220174 T C SMCR8 Silent p.I357I 0.23 TCGA-06-5416-01 17 18220198 18220198 G T SMCR8 Missense_Mutation p.Q365H 0.12 deleterious(0.02) possibly_damaging(0.907) TCGA-06-5416-01 17 18220238 18220238 G A SMCR8 Missense_Mutation p.D379N 0.26 deleterious(0.03) benign(0.004) TCGA-06-5416-01 17 18284830 18284830 G T EVPLL Missense_Mutation p.E71D 0.52 deleterious(0.02) benign(0.046) TCGA-06-5416-01 17 18284914 18284914 C G EVPLL Intron 0.19 TCGA-06-5416-01 17 18333117 18333117 G T KRT17P2 RNA 0.36 TCGA-06-5416-01 17 18344894 18344894 G T KRT16P1 RNA 0.24 TCGA-06-5416-01 17 18539907 18539907 C T TBC1D28 Silent p.Q167Q 0.38 TCGA-06-5416-01 17 18566091 18566091 G T ZNF286B Missense_Mutation p.P243H 0.23 deleterious(0.02) possibly_damaging(0.55) TCGA-06-5416-01 17 18566138 18566138 T G ZNF286B Missense_Mutation p.Q227H 0.40 tolerated(0.12) possibly_damaging(0.646) TCGA-06-5416-01 17 18566460 18566460 C A ZNF286B Missense_Mutation p.S120I 0.18 tolerated(0.24) possibly_damaging(0.553) TCGA-06-5416-01 17 18661691 18661691 C A FBXW10 Missense_Mutation p.L436I 0.14 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 17 18661795 18661795 C T FBXW10 Silent p.S470S 0.14 TCGA-06-5416-01 17 18692724 18692724 A C TVP23B Missense_Mutation p.N24T 0.16 tolerated(0.6) benign(0.001) TCGA-06-5416-01 17 18874729 18874729 C T FAM83G Nonsense_Mutation p.W805* 0.49 TCGA-06-5416-01 17 18882016 18882016 C T FAM83G Silent p.P321P 0.18 TCGA-06-5416-01 17 19286227 19286227 C T MAPK7 Silent p.F755F 0.50 TCGA-06-5416-01 17 19315838 19315838 G A RNF112 Silent p.E41E 0.38 TCGA-06-5416-01 17 19581964 19581964 A G SLC47A2 3'UTR 0.27 TCGA-06-5416-01 17 19584932 19584932 C T SLC47A2 Missense_Mutation p.A442T 0.38 deleterious(0) possibly_damaging(0.453) TCGA-06-5416-01 17 19644446 19644446 A G ALDH3A1 Missense_Mutation p.I256T 0.50 tolerated(0.28) benign(0.081) TCGA-06-5416-01 17 19708019 19708019 G T ULK2 Missense_Mutation p.H428N 0.12 tolerated(0.12) benign(0.222) TCGA-06-5416-01 17 19750166 19750166 G A ULK2 Missense_Mutation p.A118V 0.25 deleterious(0.02) probably_damaging(0.916) TCGA-06-5416-01 17 19861365 19861365 G A AKAP10 Missense_Mutation p.A280V 0.20 tolerated(0.41) benign(0.049) TCGA-06-5416-01 17 19861515 19861515 T C AKAP10 Missense_Mutation p.N230S 0.49 tolerated(0.96) benign(0) TCGA-06-5416-01 17 19861587 19861587 C A AKAP10 Missense_Mutation p.R206I 0.47 tolerated(0.13) benign(0.031) TCGA-06-5416-01 17 19861790 19861790 G T AKAP10 Nonsense_Mutation p.Y138* 0.19 TCGA-06-5416-01 17 20108524 20108524 G T SPECC1 Missense_Mutation p.A388S 0.24 tolerated(0.46) possibly_damaging(0.694) TCGA-06-5416-01 17 20135090 20135090 G A SPECC1 Silent p.E697E 0.40 TCGA-06-5416-01 17 20135558 20135558 G A SPECC1 Missense_Mutation p.A731T 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 20239365 20239365 G T RN7SL17P 5'Flank 0.39 TCGA-06-5416-01 17 20239381 20239381 G T RN7SL17P 5'Flank 0.21 TCGA-06-5416-01 17 20805631 20805631 G A RP11-344E13.3 RNA 0.47 TCGA-06-5416-01 17 20805700 20805700 C T RP11-344E13.3 RNA 0.41 TCGA-06-5416-01 17 20907520 20907520 G A USP22 Silent p.S510S 0.15 TCGA-06-5416-01 17 21094390 21094390 G A DHRS7B Missense_Mutation p.R301Q 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 21319100 21319100 G A KCNJ12 Missense_Mutation p.R149H 0.11 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 21319402 21319402 G A KCNJ12 Missense_Mutation p.D250N 0.33 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 17 2203658 2203658 C T SMG6 Missense_Mutation p.R130H 0.41 tolerated_low_confidence(0.16) benign(0.157) TCGA-06-5416-01 17 2233634 2233634 G A TSR1 Intron 0.47 TCGA-06-5416-01 17 2235464 2235464 G A TSR1 Nonsense_Mutation p.R499* 0.20 TCGA-06-5416-01 17 2238017 2238017 G T TSR1 Missense_Mutation p.L244I 0.47 tolerated(0.3) benign(0.053) TCGA-06-5416-01 17 2238987 2238987 C T TSR1 Missense_Mutation p.G80D 0.13 deleterious(0.03) benign(0.168) TCGA-06-5416-01 17 2241019 2241019 C T SGSM2 Silent p.L13L 0.38 TCGA-06-5416-01 17 2275521 2275521 C A SGSM2 Missense_Mutation p.Q539K 0.10 deleterious(0) possibly_damaging(0.69) TCGA-06-5416-01 17 2278880 2278880 C T SGSM2 Missense_Mutation p.P732L 0.42 tolerated(0.22) benign(0.012) TCGA-06-5416-01 17 2279915 2279915 C T SGSM2 Intron 0.45 TCGA-06-5416-01 17 2310302 2310302 C T AC006435.1 Missense_Mutation p.G157E 0.41 unknown(0) TCGA-06-5416-01 17 2324096 2324096 G A METTL16 Silent p.L331L 0.22 TCGA-06-5416-01 17 2381079 2381079 G T METTL16 Missense_Mutation p.P77T 0.15 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 17 25630610 25630610 C A WSB1 Missense_Mutation p.L143I 0.46 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 17 25753510 25753510 C A TBC1D3P5 RNA 0.23 TCGA-06-5416-01 17 25756986 25756986 G T TBC1D3P5 RNA 0.31 TCGA-06-5416-01 17 25967659 25967659 C T LGALS9 Missense_Mutation p.R65W 0.19 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 17 2598703 2598703 G A CLUH Missense_Mutation p.R798W 0.39 deleterious(0) probably_damaging(0.925) TCGA-06-5416-01 17 2604454 2604454 G A CLUH Silent p.F297F 0.38 TCGA-06-5416-01 17 26604287 26604287 G T AC061975.8 5'Flank 0.20 TCGA-06-5416-01 17 26656296 26656296 C T IFT20 Missense_Mutation p.G100S 0.21 tolerated(0.14) probably_damaging(0.978) TCGA-06-5416-01 17 26691649 26691649 C T VTN 3'Flank 0.16 TCGA-06-5416-01 17 26731707 26731707 C A SLC46A1 Missense_Mutation p.E336D 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-06-5416-01 17 26731841 26731841 C A SLC46A1 Nonsense_Mutation p.E292* 0.14 TCGA-06-5416-01 17 26800784 26800784 C T SLC13A2 Silent p.F18F 0.12 TCGA-06-5416-01 17 26817480 26817480 C T SLC13A2 Silent p.V129V 0.24 TCGA-06-5416-01 17 26874635 26874635 C A UNC119 Intron 0.15 TCGA-06-5416-01 17 26875016 26875016 C T UNC119 Splice_Site p.X146_splice 0.23 TCGA-06-5416-01 17 26879476 26879476 C A UNC119 Nonsense_Mutation p.E34* 0.35 TCGA-06-5416-01 17 26900871 26900871 C T ALDOC Missense_Mutation p.R294Q 0.41 deleterious(0.03) benign(0.01) TCGA-06-5416-01 17 26901108 26901108 C T ALDOC Missense_Mutation p.R259H 0.18 deleterious(0.02) benign(0.33) TCGA-06-5416-01 17 26902242 26902242 C T ALDOC Missense_Mutation p.G75R 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 17 26919805 26919805 C T SPAG5 Missense_Mutation p.A153T 0.20 tolerated_low_confidence(0.23) benign(0.014) TCGA-06-5416-01 17 26944379 26944379 C T KIAA0100 Intron 0.26 TCGA-06-5416-01 17 26946686 26946686 C T KIAA0100 Silent p.L1876L 0.38 TCGA-06-5416-01 17 26955410 26955410 C A KIAA0100 Missense_Mutation p.K1489N 0.17 deleterious(0) possibly_damaging(0.703) TCGA-06-5416-01 17 26959242 26959242 C T KIAA0100 Missense_Mutation p.R1274Q 0.44 tolerated(0.14) benign(0.241) TCGA-06-5416-01 17 26960326 26960326 C A KIAA0100 Missense_Mutation p.D1187Y 0.26 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 17 26961567 26961567 C T KIAA0100 Missense_Mutation p.R1013Q 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 27008380 27008380 C T SUPT6H Missense_Mutation p.R486C 0.15 deleterious(0.01) possibly_damaging(0.676) TCGA-06-5416-01 17 27023881 27023881 C T SUPT6H Silent p.I1330I 0.39 TCGA-06-5416-01 17 27024746 27024746 C T SUPT6H Missense_Mutation p.R1440C 0.22 deleterious(0) possibly_damaging(0.836) TCGA-06-5416-01 17 27031216 27031216 C A PROCA1 Missense_Mutation p.R124I 0.14 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 17 27031790 27031790 C T PROCA1 Missense_Mutation p.A55T 0.19 tolerated(1) benign(0.007) TCGA-06-5416-01 17 2703845 2703845 G A RAP1GAP2 Splice_Site p.X27_splice 0.32 TCGA-06-5416-01 17 27068464 27068464 G A NEK8 Missense_Mutation p.R642Q 0.43 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 17 27085297 27085297 C T FAM222B Silent p.G560G 0.14 TCGA-06-5416-01 17 27225499 27225499 C T DHRS13 Missense_Mutation p.R365Q 0.44 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-06-5416-01 17 27237383 27237383 G A PHF12 Silent p.I740I 0.06 TCGA-06-5416-01 17 27284106 27284106 C T SEZ6 Silent p.G883G 0.15 TCGA-06-5416-01 17 27287556 27287556 C T SEZ6 Missense_Mutation p.G515R 0.38 tolerated(0.36) probably_damaging(0.995) TCGA-06-5416-01 17 27296804 27296804 C T SEZ6 Missense_Mutation p.G342D 0.30 deleterious(0.04) benign(0.003) TCGA-06-5416-01 17 27380071 27380071 C T PIPOX Missense_Mutation p.R133W 0.24 tolerated(0.06) benign(0.033) TCGA-06-5416-01 17 27423864 27423864 G A MYO18A Nonsense_Mutation p.R1434* 0.39 TCGA-06-5416-01 17 27438748 27438748 T C MYO18A Missense_Mutation p.D911G 0.39 tolerated(0.78) benign(0.009) TCGA-06-5416-01 17 27492976 27492976 C T MYO18A Missense_Mutation p.R328H 0.17 tolerated(0.13) benign(0.001) TCGA-06-5416-01 17 27778641 27778641 G A TAOK1 Silent p.E25E 0.19 TCGA-06-5416-01 17 27778663 27778663 G T TAOK1 Nonsense_Mutation p.E33* 0.23 TCGA-06-5416-01 17 27893430 27893430 G A ABHD15 Silent p.G185G 0.21 TCGA-06-5416-01 17 27898614 27898614 G T TP53I13 Missense_Mutation p.E63D 0.38 tolerated_low_confidence(0.05) benign(0.081) TCGA-06-5416-01 17 27903361 27903361 G A GIT1 Silent p.G505G 0.22 TCGA-06-5416-01 17 27935096 27935096 G A ANKRD13B Missense_Mutation p.G115S 0.39 tolerated(0.06) benign(0.09) TCGA-06-5416-01 17 27936399 27936399 G A ANKRD13B Missense_Mutation p.R261H 0.46 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 17 27943981 27943981 G A CORO6 Missense_Mutation p.S278F 0.22 deleterious(0) possibly_damaging(0.521) TCGA-06-5416-01 17 27946087 27946087 G T CORO6 Missense_Mutation p.L148I 0.41 deleterious(0.01) probably_damaging(0.956) TCGA-06-5416-01 17 27959650 27959650 G T SSH2 Silent p.G827G 0.23 TCGA-06-5416-01 17 28270669 28270669 T C EFCAB5 Splice_Site p.X64_splice 0.59 TCGA-06-5416-01 17 28361332 28361332 C T EFCAB5 Missense_Mutation p.R377W 0.51 deleterious(0.02) possibly_damaging(0.566) TCGA-06-5416-01 17 28386673 28386673 C A EFCAB5 Silent p.L897L 0.23 TCGA-06-5416-01 17 28407882 28407882 C A EFCAB5 Missense_Mutation p.F1103L 0.19 tolerated(0.16) benign(0.125) TCGA-06-5416-01 17 28508020 28508020 C A NSRP1 Missense_Mutation p.S201R 0.45 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 17 28511989 28511989 C T NSRP1 Missense_Mutation p.S325F 0.23 deleterious(0.03) benign(0.016) TCGA-06-5416-01 17 28537577 28537577 C T SLC6A4 Missense_Mutation p.V469M 0.19 deleterious(0.04) possibly_damaging(0.631) TCGA-06-5416-01 17 28537580 28537580 C T SLC6A4 Missense_Mutation p.A468T 0.26 tolerated(0.19) benign(0.105) TCGA-06-5416-01 17 28599901 28599901 T C BLMH Missense_Mutation p.D273G 0.18 deleterious(0.01) possibly_damaging(0.895) TCGA-06-5416-01 17 28770946 28770946 C A CPD Missense_Mutation p.L834I 0.23 deleterious(0.04) probably_damaging(0.995) TCGA-06-5416-01 17 2888283 2888283 C A RAP1GAP2 Missense_Mutation p.Q246K 0.24 deleterious(0.03) benign(0.019) TCGA-06-5416-01 17 28889889 28889889 C A TBC1D29 Missense_Mutation p.L61I 0.26 tolerated(0.4) possibly_damaging(0.714) TCGA-06-5416-01 17 28889891 28889891 C A TBC1D29 Silent p.L61L 0.26 TCGA-06-5416-01 17 29111417 29111417 C T CRLF3 Missense_Mutation p.A373T 0.46 tolerated(0.06) benign(0.024) TCGA-06-5416-01 17 29592263 29592263 A C NF1 Missense_Mutation p.K1581Q 0.24 deleterious(0.04) possibly_damaging(0.688) TCGA-06-5416-01 17 29622708 29622708 G T OMG Silent p.L214L 0.43 TCGA-06-5416-01 17 29653016 29653016 G A NF1 Missense_Mutation p.D1672N 0.26 deleterious(0.01) benign(0.025) TCGA-06-5416-01 17 29654516 29654516 G A NF1 Splice_Site p.X1757_splice 0.19 TCGA-06-5416-01 17 2966447 2966447 G T OR1D5 Missense_Mutation p.S152Y 0.26 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 17 29670028 29670028 G A NF1 Missense_Mutation p.S2355N 0.17 tolerated(0.1) possibly_damaging(0.643) TCGA-06-5416-01 17 29677270 29677270 C T NF1 Missense_Mutation p.T2464I 0.41 tolerated(0.11) benign(0.046) TCGA-06-5416-01 17 29684354 29684354 C T NF1 Missense_Mutation p.A2646V 0.19 deleterious(0) probably_damaging(0.97) TCGA-06-5416-01 17 29685604 29685604 G T NF1 Nonsense_Mutation p.E2693* 0.26 TCGA-06-5416-01 17 29848319 29848319 C T RAB11FIP4 Silent p.C233C 0.40 TCGA-06-5416-01 17 29850946 29850946 G T RAB11FIP4 Missense_Mutation p.E355D 0.14 tolerated(0.06) possibly_damaging(0.751) TCGA-06-5416-01 17 2995437 2995437 T C OR1D2 Missense_Mutation p.N285S 0.44 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 17 30213045 30213045 G A UTP6 Silent p.G219G 0.15 TCGA-06-5416-01 17 3030219 3030219 A G OR1G1 Silent p.I209I 0.23 TCGA-06-5416-01 17 30348245 30348245 C T LRRC37B Missense_Mutation p.P27L 0.17 tolerated(0.67) benign(0.376) TCGA-06-5416-01 17 30348507 30348507 C A LRRC37B Missense_Mutation p.F114L 0.42 tolerated(0.3) benign(0.243) TCGA-06-5416-01 17 30349794 30349794 C T LRRC37B Silent p.R543R 0.18 TCGA-06-5416-01 17 30536279 30536279 G A RHOT1 Intron 0.42 TCGA-06-5416-01 17 30621416 30621416 G A RHBDL3 Missense_Mutation p.R208Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 30658763 30658763 A C C17orf75 3'UTR 0.28 TCGA-06-5416-01 17 30692352 30692352 T G ZNF207 Missense_Mutation p.M225R 0.21 tolerated(0.62) benign(0.402) TCGA-06-5416-01 17 30693715 30693715 C T ZNF207 Missense_Mutation p.A287V 0.23 tolerated(0.31) unknown(0) TCGA-06-5416-01 17 30801825 30801825 C T PSMD11 Missense_Mutation p.R278W 0.15 deleterious(0) probably_damaging(0.918) TCGA-06-5416-01 17 31048192 31048192 G A MYO1D Missense_Mutation p.R588C 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 31072303 31072303 G A MYO1D Silent p.V513V 0.40 TCGA-06-5416-01 17 31091939 31091939 T C MYO1D Missense_Mutation p.H331R 0.41 deleterious(0.01) probably_damaging(0.983) TCGA-06-5416-01 17 31091967 31091967 T C MYO1D Missense_Mutation p.T322A 0.20 tolerated(1) benign(0.016) TCGA-06-5416-01 17 31107760 31107760 G A MYO1D Silent p.V46V 0.47 TCGA-06-5416-01 17 31258650 31258650 G A TMEM98 Missense_Mutation p.R35Q 0.56 tolerated(0.51) benign(0.238) TCGA-06-5416-01 17 31350925 31350925 C T ASIC2 Missense_Mutation p.A435T 0.22 deleterious(0.01) probably_damaging(0.946) TCGA-06-5416-01 17 3144009 3144009 C A OR1D4 RNA 0.17 TCGA-06-5416-01 17 3144044 3144044 G T OR1D4 RNA 0.13 TCGA-06-5416-01 17 31618565 31618565 T C ASIC2 Missense_Mutation p.D190G 0.27 deleterious(0.04) possibly_damaging(0.755) TCGA-06-5416-01 17 3181419 3181419 G T OR3A2 Missense_Mutation p.L271M 0.19 tolerated(0.21) benign(0.213) TCGA-06-5416-01 17 32598276 32598276 C A CCL7 Missense_Mutation p.A63D 0.17 deleterious(0.02) probably_damaging(0.974) TCGA-06-5416-01 17 32612782 32612782 G T CCL11 5'UTR 0.17 TCGA-06-5416-01 17 32614740 32614740 C A CCL11 3'UTR 0.29 TCGA-06-5416-01 17 33266229 33266229 G A CCT6B Missense_Mutation p.R396C 0.20 deleterious(0.02) possibly_damaging(0.893) TCGA-06-5416-01 17 33269874 33269874 C A CCT6B Missense_Mutation p.K222N 0.19 deleterious(0) possibly_damaging(0.851) TCGA-06-5416-01 17 33330042 33330042 G T LIG3 Intron 0.29 TCGA-06-5416-01 17 33344575 33344575 G A RFFL Silent p.S214S 0.18 TCGA-06-5416-01 17 3336787 3336787 C T OR1E2 Missense_Mutation p.A117T 0.19 tolerated(0.15) benign(0.028) TCGA-06-5416-01 17 33433456 33433456 G T RAD51D Silent p.I195I 0.19 TCGA-06-5416-01 17 33457367 33457367 C T FNDC8 Missense_Mutation p.R297C 0.28 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 17 33464894 33464894 A G NLE1 Missense_Mutation p.V159A 0.44 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 17 33464903 33464903 C A NLE1 Missense_Mutation p.R156I 0.19 deleterious(0.02) benign(0.285) TCGA-06-5416-01 17 33479973 33479973 A C UNC45B Missense_Mutation p.E148A 0.43 tolerated(0.4) benign(0.003) TCGA-06-5416-01 17 33486481 33486481 C T UNC45B Missense_Mutation p.A299V 0.47 tolerated(0.22) benign(0.324) TCGA-06-5416-01 17 33497168 33497168 G A UNC45B Missense_Mutation p.R528Q 0.40 deleterious(0) probably_damaging(0.938) TCGA-06-5416-01 17 33498470 33498470 G A UNC45B Missense_Mutation p.E609K 0.25 tolerated(0.05) benign(0.058) TCGA-06-5416-01 17 33521238 33521238 C T SLC35G3 Missense_Mutation p.R30H 0.25 tolerated(0.17) possibly_damaging(0.575) TCGA-06-5416-01 17 33521318 33521318 G A SLC35G3 Silent p.G3G 0.32 TCGA-06-5416-01 17 33591510 33591510 G A SLFN5 Missense_Mutation p.G483S 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 33680483 33680483 G A SLFN11 Silent p.H598H 0.12 TCGA-06-5416-01 17 33690139 33690139 T C SLFN11 Missense_Mutation p.T230A 0.22 tolerated(0.76) benign(0.02) TCGA-06-5416-01 17 33690175 33690175 A G SLFN11 Missense_Mutation p.F218L 0.46 deleterious(0.02) probably_damaging(0.977) TCGA-06-5416-01 17 33690601 33690601 C A SLFN11 Missense_Mutation p.D76Y 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 33738552 33738552 C T SLFN12 Silent p.S514S 0.23 TCGA-06-5416-01 17 33802181 33802182 - T SLFN12L Frame_Shift_Ins p.V510Sfs*13 0.21 TCGA-06-5416-01 17 33806634 33806634 C T SLFN12L Missense_Mutation p.A199T 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 17 33849578 33849578 C T SLFN12L 5'UTR 0.43 TCGA-06-5416-01 17 33849930 33849930 C T SLFN12L 5'UTR 0.35 TCGA-06-5416-01 17 33935372 33935372 C A AP2B1 Missense_Mutation p.S164Y 0.38 tolerated(0.12) benign(0.054) TCGA-06-5416-01 17 34036263 34036263 C T AP2B1 Silent p.I825I 0.37 TCGA-06-5416-01 17 34136577 34136577 T C TAF15 Missense_Mutation p.S2P 0.20 deleterious_low_confidence(0.01) unknown(0) TCGA-06-5416-01 17 34171859 34171859 G A TAF15 Missense_Mutation p.R519Q 0.46 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 17 34182158 34182158 G A C17orf66 Missense_Mutation p.S541L 0.25 tolerated(0.28) benign(0.032) TCGA-06-5416-01 17 34182274 34182274 G A C17orf66 Silent p.N502N 0.41 TCGA-06-5416-01 17 34182396 34182396 G A C17orf66 Missense_Mutation p.L462F 0.21 tolerated(0.1) possibly_damaging(0.793) TCGA-06-5416-01 17 34185223 34185223 G A C17orf66 Missense_Mutation p.T378M 0.21 tolerated(0.23) benign(0.167) TCGA-06-5416-01 17 34199422 34199422 T C CCL5 Missense_Mutation p.K79E 0.45 tolerated(0.94) benign(0.11) TCGA-06-5416-01 17 34233466 34233466 C T AC015849.16 RNA 0.28 TCGA-06-5416-01 17 34234075 34234075 G A AC015849.16 RNA 0.44 TCGA-06-5416-01 17 34236464 34236464 C A AC015849.16 RNA 0.46 TCGA-06-5416-01 17 34245319 34245319 G A RDM1 3'UTR 0.46 TCGA-06-5416-01 17 34310897 34310897 G T CCL14 Silent p.V90V 0.17 TCGA-06-5416-01 17 3433483 3433483 G T TRPV3 Silent p.I360I 0.20 TCGA-06-5416-01 17 3447878 3447878 G A TRPV3 Silent p.S102S 0.20 TCGA-06-5416-01 17 34497333 34497333 C T TBC1D3B Missense_Mutation p.A195T 0.33 deleterious(0.02) benign(0.408) TCGA-06-5416-01 17 34497336 34497336 C T TBC1D3B Missense_Mutation p.A194T 0.33 tolerated(0.47) benign(0.127) TCGA-06-5416-01 17 34499226 34499226 C T TBC1D3B Missense_Mutation p.R162Q 0.15 deleterious(0.02) benign(0.305) TCGA-06-5416-01 17 34499261 34499261 G A TBC1D3B Silent p.S150S 0.07 TCGA-06-5416-01 17 34499289 34499289 T C TBC1D3B Missense_Mutation p.H141R 0.16 tolerated(0.22) benign(0.012) TCGA-06-5416-01 17 34851082 34851082 T C ZNHIT3 Missense_Mutation p.L101S 0.22 deleterious(0) possibly_damaging(0.798) TCGA-06-5416-01 17 34862836 34862836 C T MYO19 Missense_Mutation p.R537Q 0.22 tolerated(0.62) benign(0.026) TCGA-06-5416-01 17 34862951 34862951 C T MYO19 Missense_Mutation p.A499T 0.38 tolerated(0.4) possibly_damaging(0.821) TCGA-06-5416-01 17 34942351 34942351 C T GGNBP2 Missense_Mutation p.S483L 0.43 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 17 34943466 34943466 C T GGNBP2 Nonsense_Mutation p.R561* 0.21 TCGA-06-5416-01 17 34943657 34943657 G A GGNBP2 Silent p.K624K 0.43 TCGA-06-5416-01 17 3494605 3494605 G A TRPV1 Silent p.T109T 0.11 TCGA-06-5416-01 17 34956105 34956105 C A DHRS11 Silent p.I196I 0.19 TCGA-06-5416-01 17 3514078 3514078 C A SHPK Missense_Mutation p.G405C 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 35310376 35310376 G T AATF Missense_Mutation p.E158D 0.17 deleterious(0.03) possibly_damaging(0.769) TCGA-06-5416-01 17 35376310 35376310 C T AATF Nonsense_Mutation p.R469* 0.39 TCGA-06-5416-01 17 35564617 35564617 G A ACACA Missense_Mutation p.R1269W 0.43 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 17 3564138 3564138 G T CTNS 3'UTR 0.25 TCGA-06-5416-01 17 35641816 35641816 C A ACACA Missense_Mutation p.D132Y 0.18 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-06-5416-01 17 35827605 35827605 A G TADA2A Missense_Mutation p.T291A 0.27 tolerated(0.81) benign(0) TCGA-06-5416-01 17 35878936 35878936 C T SYNRG 3'UTR 0.47 TCGA-06-5416-01 17 35896107 35896107 C T SYNRG Missense_Mutation p.G1214S 0.24 tolerated(0.33) probably_damaging(1) TCGA-06-5416-01 17 3593747 3593747 G A P2RX5 Silent p.C169C 0.26 TCGA-06-5416-01 17 35956312 35956312 C A SYNRG Missense_Mutation p.M66I 0.14 tolerated_low_confidence(0.11) possibly_damaging(0.584) TCGA-06-5416-01 17 36047312 36047312 G T HNF1B 3'UTR 0.30 TCGA-06-5416-01 17 36091634 36091634 C T HNF1B Missense_Mutation p.G333S 0.43 tolerated(0.81) benign(0.003) TCGA-06-5416-01 17 36093597 36093597 C T HNF1B Silent p.K254K 0.17 TCGA-06-5416-01 17 36288207 36288207 C T TBC1D3F Missense_Mutation p.A98V 0.18 tolerated(1) benign(0.001) TCGA-06-5416-01 17 3629208 3629208 C T GSG2 Missense_Mutation p.T660I 0.25 deleterious(0.01) possibly_damaging(0.74) TCGA-06-5416-01 17 36375149 36375149 C A RP11-1407O15.2 Missense_Mutation p.Q123H 0.24 TCGA-06-5416-01 17 36482688 36482688 C T GPR179 Missense_Mutation p.G2255D 0.49 deleterious(0) possibly_damaging(0.615) TCGA-06-5416-01 17 36482845 36482845 C A GPR179 Nonsense_Mutation p.E2203* 0.44 TCGA-06-5416-01 17 36483260 36483260 C A GPR179 Missense_Mutation p.E2064D 0.19 tolerated(0.07) benign(0.298) TCGA-06-5416-01 17 36484874 36484874 C A GPR179 Missense_Mutation p.Q1526H 0.24 deleterious(0.01) possibly_damaging(0.711) TCGA-06-5416-01 17 36486010 36486010 C A GPR179 Missense_Mutation p.D1148Y 0.42 deleterious(0) possibly_damaging(0.865) TCGA-06-5416-01 17 36486768 36486768 C T GPR179 Missense_Mutation p.R895Q 0.40 tolerated(0.42) benign(0.063) TCGA-06-5416-01 17 36487053 36487053 C T GPR179 Missense_Mutation p.R800Q 0.61 tolerated(0.31) benign(0.018) TCGA-06-5416-01 17 36493021 36493021 C T GPR179 Missense_Mutation p.C356Y 0.10 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 17 3653716 3653716 C A ITGAE Missense_Mutation p.G652C 0.29 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 17 36708268 36708268 C T SRCIN1 Missense_Mutation p.E861K 0.25 deleterious(0.02) benign(0.046) TCGA-06-5416-01 17 3680954 3680954 C T ITGAE Missense_Mutation p.S12N 0.40 tolerated(0.41) benign(0.001) TCGA-06-5416-01 17 36872978 36872978 G T MLLT6 Missense_Mutation p.E465D 0.18 deleterious(0.04) unknown(0) TCGA-06-5416-01 17 36876078 36876078 G A MLLT6 Silent p.P695P 0.53 TCGA-06-5416-01 17 36955610 36955610 G A PIP4K2B Missense_Mutation p.T23I 0.29 tolerated(0.16) possibly_damaging(0.885) TCGA-06-5416-01 17 37093532 37093532 C T FBXO47 Missense_Mutation p.E419K 0.14 tolerated(0.08) benign(0.093) TCGA-06-5416-01 17 37099939 37099939 G T FBXO47 Missense_Mutation p.L282M 0.42 deleterious(0.01) possibly_damaging(0.515) TCGA-06-5416-01 17 3716481 3716481 C T C17orf85 Missense_Mutation p.D574N 0.43 deleterious_low_confidence(0.02) benign(0.067) TCGA-06-5416-01 17 37188324 37188324 C A CTD-2206N4.2 5'Flank 0.37 TCGA-06-5416-01 17 37188511 37188511 C T LRRC37A11P RNA 0.42 TCGA-06-5416-01 17 37224179 37224179 G A PLXDC1 Missense_Mutation p.R473C 0.42 deleterious(0) possibly_damaging(0.863) TCGA-06-5416-01 17 37265502 37265502 G A PLXDC1 Missense_Mutation p.S133L 0.30 tolerated(0.09) possibly_damaging(0.676) TCGA-06-5416-01 17 37357508 37357508 C T RPL19 Silent p.R16R 0.23 TCGA-06-5416-01 17 37381778 37381778 G T STAC2 5'UTR 0.22 TCGA-06-5416-01 17 37453380 37453380 G A FBXL20 Missense_Mutation p.A133V 0.37 tolerated(0.28) benign(0.003) TCGA-06-5416-01 17 37561555 37561555 C A MED1 3'Flank 0.12 TCGA-06-5416-01 17 37565590 37565590 C A MED1 Missense_Mutation p.D962Y 0.28 deleterious_low_confidence(0.05) probably_damaging(0.947) TCGA-06-5416-01 17 37566573 37566573 G A MED1 Missense_Mutation p.S634L 0.21 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-06-5416-01 17 37618785 37618785 C T CDK12 Missense_Mutation p.S154L 0.22 unknown(0) TCGA-06-5416-01 17 37673781 37673781 C T CDK12 Nonsense_Mutation p.R979* 0.17 TCGA-06-5416-01 17 37687382 37687382 C T CDK12 Missense_Mutation p.S1429F 0.17 possibly_damaging(0.648) TCGA-06-5416-01 17 37871777 37871777 G A ERBB2 Missense_Mutation p.R434Q 0.38 deleterious(0) probably_damaging(0.922) TCGA-06-5416-01 17 37872568 37872568 G A ERBB2 Missense_Mutation p.A510T 0.71 tolerated(0.39) benign(0.001) TCGA-06-5416-01 17 37882052 37882052 C T ERBB2 Missense_Mutation p.R940W 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 37922111 37922111 G A IKZF3 Nonsense_Mutation p.R488* 0.22 TCGA-06-5416-01 17 37922143 37922143 C T IKZF3 Missense_Mutation p.R477H 0.21 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 17 38031516 38031516 C T ZPBP2 Nonsense_Mutation p.R240* 0.20 TCGA-06-5416-01 17 3807694 3807694 C T P2RX1 Splice_Site p.X120_splice 0.30 TCGA-06-5416-01 17 38122548 38122548 A G GSDMA Missense_Mutation p.M84V 0.42 tolerated(0.23) benign(0.006) TCGA-06-5416-01 17 38230744 38230744 G A THRA Translation_Start_Site p.M1? 0.12 deleterious_low_confidence(0) possibly_damaging(0.577) TCGA-06-5416-01 17 38249268 38249268 T C THRA Intron 0.18 TCGA-06-5416-01 17 38285548 38285548 C A MSL1 Missense_Mutation p.A85D 0.06 tolerated(0.27) probably_damaging(0.929) TCGA-06-5416-01 17 3828624 3828624 C T ATP2A3 3'UTR 0.41 TCGA-06-5416-01 17 38348888 38348888 G T RAPGEFL1 Nonsense_Mutation p.E357* 0.39 TCGA-06-5416-01 17 3838542 3838542 C T ATP2A3 Missense_Mutation p.A852T 0.12 tolerated(0.46) probably_damaging(1) TCGA-06-5416-01 17 3850695 3850695 G A ATP2A3 Missense_Mutation p.S362F 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 38508678 38508678 C T RARA Silent p.F242F 0.22 TCGA-06-5416-01 17 3851017 3851017 C T ATP2A3 Missense_Mutation p.E255K 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 17 38546236 38546236 G A TOP2A Missense_Mutation p.S1483L 0.24 deleterious_low_confidence(0.03) benign(0.007) TCGA-06-5416-01 17 3854956 3854956 G A ATP2A3 Silent p.G81G 0.19 TCGA-06-5416-01 17 38573011 38573011 G T TOP2A Missense_Mutation p.S53Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 17 38715162 38715162 G T CCR7 Missense_Mutation p.L15I 0.21 tolerated_low_confidence(0.17) probably_damaging(0.934) TCGA-06-5416-01 17 38812793 38812793 C T KRT222 Missense_Mutation p.R250Q 0.20 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 17 38907523 38907523 G A KRT25 Missense_Mutation p.A242V 0.21 deleterious(0.01) possibly_damaging(0.732) TCGA-06-5416-01 17 38910251 38910251 G A KRT25 Missense_Mutation p.A177V 0.26 deleterious(0.04) possibly_damaging(0.85) TCGA-06-5416-01 17 38910676 38910676 G A KRT25 Silent p.I158I 0.46 TCGA-06-5416-01 17 38948732 38948732 C A KRT28 Nonsense_Mutation p.E448* 0.25 TCGA-06-5416-01 17 38953286 38953286 G A KRT28 Missense_Mutation p.S287L 0.24 tolerated(0.13) benign(0.033) TCGA-06-5416-01 17 38975454 38975454 G A TMEM99 5'UTR 0.41 TCGA-06-5416-01 17 38978310 38978310 G A KRT10 Silent p.G176G 0.42 TCGA-06-5416-01 17 38978591 38978591 C A KRT10 Missense_Mutation p.G83C 0.23 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 17 38991677 38991677 G T TMEM99 3'UTR 0.15 TCGA-06-5416-01 17 39041093 39041093 G A KRT20 Silent p.R115R 0.47 TCGA-06-5416-01 17 39080732 39080732 C A KRT23 Missense_Mutation p.S389I 0.17 deleterious(0.02) benign(0.054) TCGA-06-5416-01 17 39084731 39084731 C A KRT23 Missense_Mutation p.K255N 0.16 tolerated(1) benign(0.134) TCGA-06-5416-01 17 39092853 39092853 C A KRT23 Translation_Start_Site p.M1? 0.39 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 17 39134326 39134326 G A KRT40 3'UTR 0.35 TCGA-06-5416-01 17 39134527 39134527 C T KRT40 Silent p.S406S 0.12 TCGA-06-5416-01 17 39138681 39138681 C A KRT40 Nonsense_Mutation p.E189* 0.43 TCGA-06-5416-01 17 39190991 39190991 C A KRTAP1-3 Missense_Mutation p.S28I 0.30 deleterious(0.02) unknown(0) TCGA-06-5416-01 17 3921213 3921213 G A ZZEF1 Missense_Mutation p.R2520W 0.25 deleterious(0) possibly_damaging(0.753) TCGA-06-5416-01 17 39262169 39262169 C T KRTAP4-9 Missense_Mutation p.R177C 0.48 deleterious(0.01) unknown(0) TCGA-06-5416-01 17 39296394 39296394 G A KRTAP4-6 Missense_Mutation p.R116C 0.18 deleterious(0) unknown(0) TCGA-06-5416-01 17 39316417 39316417 T C KRTAP4-4 3'UTR 0.41 TCGA-06-5416-01 17 39316890 39316890 C A KRTAP4-4 Missense_Mutation p.E18D 0.21 unknown(0) TCGA-06-5416-01 17 39334402 39334402 A G KRTAP4-2 Silent p.C5C 0.19 TCGA-06-5416-01 17 39521473 39521473 C T KRT33B Missense_Mutation p.R277H 0.24 deleterious(0.03) possibly_damaging(0.721) TCGA-06-5416-01 17 39521715 39521715 C T KRT33B Missense_Mutation p.E227K 0.23 tolerated(0.06) benign(0.183) TCGA-06-5416-01 17 39535984 39535984 C T KRT34 Splice_Site p.X239_splice 0.17 TCGA-06-5416-01 17 39551304 39551304 T C KRT31 Missense_Mutation p.N298S 0.16 tolerated(0.68) benign(0.151) TCGA-06-5416-01 17 39553456 39553456 C A KRT31 Missense_Mutation p.E112D 0.44 tolerated(0.25) benign(0.03) TCGA-06-5416-01 17 39564814 39564814 G A AC003958.2 RNA 0.29 TCGA-06-5416-01 17 39578433 39578433 C T KRT37 Missense_Mutation p.S303N 0.40 tolerated(1) benign(0.269) TCGA-06-5416-01 17 39580692 39580692 G A KRT37 Silent p.I28I 0.41 TCGA-06-5416-01 17 39596470 39596470 G A KRT38 Missense_Mutation p.A173V 0.49 deleterious(0.01) benign(0.016) TCGA-06-5416-01 17 39622141 39622141 C T KRT32 Missense_Mutation p.D198N 0.40 deleterious(0.03) benign(0.109) TCGA-06-5416-01 17 39643859 39643859 C T KRT36 Missense_Mutation p.R277H 0.23 tolerated(0.13) benign(0.071) TCGA-06-5416-01 17 39658703 39658703 C A KRT13 Missense_Mutation p.K389N 0.50 tolerated(0.07) benign(0.123) TCGA-06-5416-01 17 39658760 39658760 G A KRT13 Silent p.I370I 0.18 TCGA-06-5416-01 17 39670992 39670992 A G KRT15 Intron 0.24 TCGA-06-5416-01 17 39724487 39724487 G T KRT9 Missense_Mutation p.L441I 0.15 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 17 39724597 39724597 C T KRT9 Missense_Mutation p.R404H 0.26 deleterious(0.02) benign(0.427) TCGA-06-5416-01 17 39724856 39724856 A G KRT9 Silent p.S358S 0.43 TCGA-06-5416-01 17 39728118 39728118 C A KRT9 Nonsense_Mutation p.G43* 0.53 TCGA-06-5416-01 17 39728177 39728177 C T KRT9 Missense_Mutation p.G23D 0.53 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 17 39742978 39742978 C T KRT14 Missense_Mutation p.G37R 0.54 tolerated(0.15) unknown(0) TCGA-06-5416-01 17 39766099 39766099 C A KRT16 3'UTR 0.38 TCGA-06-5416-01 17 39766789 39766789 C A KRT16 Missense_Mutation p.E358D 0.23 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 17 39767743 39767743 C T KRT16 Missense_Mutation p.E209K 0.46 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 17 39777927 39777927 C T KRT17 Missense_Mutation p.R251H 0.24 tolerated(0.06) benign(0.035) TCGA-06-5416-01 17 39966001 39966001 G A LEPREL4 Silent p.F291F 0.44 TCGA-06-5416-01 17 39967467 39967467 T C LEPREL4 Missense_Mutation p.T178A 0.04 deleterious(0.01) benign(0.161) TCGA-06-5416-01 17 39977957 39977957 C T FKBP10 Missense_Mutation p.S484F 0.41 deleterious(0.02) possibly_damaging(0.707) TCGA-06-5416-01 17 39998244 39998244 A G KLHL10 Missense_Mutation p.M122V 0.24 tolerated(0.58) benign(0.007) TCGA-06-5416-01 17 40025343 40025343 G A ACLY Silent p.I1029I 0.22 TCGA-06-5416-01 17 40028079 40028079 G A ACLY Missense_Mutation p.R934W 0.40 deleterious(0) probably_damaging(0.927) TCGA-06-5416-01 17 4008083 4008083 C A ZZEF1 Nonsense_Mutation p.E473* 0.42 TCGA-06-5416-01 17 40094935 40094935 G A TTC25 RNA 0.20 TCGA-06-5416-01 17 40149250 40149250 A G DNAJC7 Silent p.C58C 0.49 TCGA-06-5416-01 17 40173573 40173573 T C NKIRAS2 Intron 0.42 TCGA-06-5416-01 17 40254315 40254315 G A DHX58 Silent p.V590V 0.45 TCGA-06-5416-01 17 40262851 40262851 C T DHX58 Missense_Mutation p.E151K 0.26 tolerated(0.79) benign(0.17) TCGA-06-5416-01 17 40321497 40321497 C T KCNH4 Missense_Mutation p.E530K 0.35 deleterious(0) benign(0.024) TCGA-06-5416-01 17 40328141 40328141 C T KCNH4 Missense_Mutation p.D254N 0.43 tolerated(0.08) benign(0.004) TCGA-06-5416-01 17 40369192 40369192 C A STAT5B Missense_Mutation p.V456F 0.20 deleterious(0) benign(0.072) TCGA-06-5416-01 17 40459648 40459648 G A STAT5A Missense_Mutation p.D605N 0.21 deleterious(0.04) possibly_damaging(0.896) TCGA-06-5416-01 17 40460196 40460196 C T STAT5A Missense_Mutation p.P636L 0.43 tolerated(0.15) benign(0.057) TCGA-06-5416-01 17 40475640 40475640 G A STAT3 Missense_Mutation p.P535L 0.18 tolerated(0.23) benign(0.027) TCGA-06-5416-01 17 4053253 4053253 G A CYB5D2 Missense_Mutation p.D107N 0.44 deleterious(0.01) benign(0.298) TCGA-06-5416-01 17 40653232 40653232 C A ATP6V0A1 Missense_Mutation p.F645L 0.18 tolerated(0.28) benign(0.02) TCGA-06-5416-01 17 40705867 40705867 C T HSD17B1 Silent p.C167C 0.43 TCGA-06-5416-01 17 40714388 40714388 G A COASY 5'UTR 0.39 TCGA-06-5416-01 17 40715279 40715279 C T COASY Silent p.V242V 0.47 TCGA-06-5416-01 17 40725112 40725112 G T MLX 3'UTR 0.49 TCGA-06-5416-01 17 40762576 40762576 G T TUBG1 Missense_Mutation p.A100S 0.33 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 17 40764521 40764521 A G TUBG1 Missense_Mutation p.D159G 0.43 deleterious(0) possibly_damaging(0.854) TCGA-06-5416-01 17 40839855 40839855 C T CNTNAP1 Missense_Mutation p.R388C 0.24 deleterious(0) possibly_damaging(0.871) TCGA-06-5416-01 17 40840915 40840915 G A CNTNAP1 Missense_Mutation p.R493Q 0.39 tolerated(0.59) benign(0.003) TCGA-06-5416-01 17 40861930 40861930 G A EZH1 Missense_Mutation p.S476L 0.23 tolerated(0.28) benign(0.036) TCGA-06-5416-01 17 4086735 4086735 C T ANKFY1 Missense_Mutation p.S679N 0.43 deleterious(0.04) possibly_damaging(0.802) TCGA-06-5416-01 17 40880876 40880876 T G EZH1 Missense_Mutation p.Q28H 0.15 tolerated(0.07) probably_damaging(0.965) TCGA-06-5416-01 17 40914971 40914971 A G RAMP2 3'UTR 0.34 TCGA-06-5416-01 17 40933187 40933187 G T WNK4 Missense_Mutation p.K157N 0.11 tolerated(0.24) unknown(0) TCGA-06-5416-01 17 40945640 40945640 C T WNK4 Nonsense_Mutation p.R730* 0.48 TCGA-06-5416-01 17 40957803 40957803 G T CNTD1 Nonsense_Mutation p.E161* 0.20 TCGA-06-5416-01 17 40961410 40961410 G T CNTD1 Missense_Mutation p.G284C 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 17 41001315 41001315 A G AOC2 Missense_Mutation p.I601V 0.18 tolerated(0.09) benign(0.134) TCGA-06-5416-01 17 41003377 41003377 T C AOC3 Missense_Mutation p.I6T 0.48 tolerated(0.47) benign(0) TCGA-06-5416-01 17 41020394 41020394 G A AOC4P RNA 0.21 TCGA-06-5416-01 17 41063027 41063027 G A G6PC Missense_Mutation p.A220T 0.26 deleterious(0.03) benign(0.337) TCGA-06-5416-01 17 41063090 41063090 G A G6PC Missense_Mutation p.A241T 0.19 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 17 41116188 41116188 C A PTGES3L-AARSD1 Nonsense_Mutation p.E210* 0.19 TCGA-06-5416-01 17 41141367 41141367 G T RUNDC1 Missense_Mutation p.D223Y 0.18 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 17 41174093 41174093 G T VAT1 Missense_Mutation p.L83M 0.21 deleterious(0.01) benign(0.01) TCGA-06-5416-01 17 41180720 41180720 T C RND2 3'UTR 0.59 TCGA-06-5416-01 17 41243774 41243774 C A BRCA1 Missense_Mutation p.E1258D 0.49 tolerated(0.23) benign(0.129) TCGA-06-5416-01 17 41243779 41243779 C A BRCA1 Nonsense_Mutation p.E1257* 0.51 TCGA-06-5416-01 17 41246845 41246845 T C BRCA1 Missense_Mutation p.N235D 0.25 tolerated(0.23) benign(0.024) TCGA-06-5416-01 17 41342647 41342647 C A NBR1 Silent p.I239I 0.24 TCGA-06-5416-01 17 41346424 41346424 G A NBR1 Missense_Mutation p.E528K 0.47 tolerated(0.23) benign(0.005) TCGA-06-5416-01 17 41352415 41352415 C A NBR1 Missense_Mutation p.S753Y 0.26 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 17 4139184 4139184 C T ANKFY1 Missense_Mutation p.D111N 0.43 deleterious(0.01) benign(0.263) TCGA-06-5416-01 17 41561526 41561526 C T DHX8 Missense_Mutation p.H41Y 0.17 tolerated(0.05) unknown(0) TCGA-06-5416-01 17 41567775 41567775 A G DHX8 Missense_Mutation p.N84S 0.40 tolerated(1) unknown(0) TCGA-06-5416-01 17 41601057 41601057 G A DHX8 Missense_Mutation p.D1169N 0.19 deleterious(0.05) possibly_damaging(0.648) TCGA-06-5416-01 17 41601131 41601131 G T DHX8 Missense_Mutation p.K1193N 0.18 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 17 41836057 41836057 A C SOST Missense_Mutation p.F18C 0.15 tolerated(0.1) possibly_damaging(0.905) TCGA-06-5416-01 17 41908961 41908961 A C MPP3 Missense_Mutation p.V37G 0.36 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 17 41931310 41931310 C T CD300LG Missense_Mutation p.A206V 0.14 deleterious(0.01) possibly_damaging(0.9) TCGA-06-5416-01 17 41931409 41931409 C T CD300LG Missense_Mutation p.P239L 0.18 tolerated(0.13) benign(0.013) TCGA-06-5416-01 17 41939261 41939261 G A CD300LG Silent p.S327S 0.20 TCGA-06-5416-01 17 41959719 41959719 C T MPP2 Missense_Mutation p.R205H 0.21 tolerated(0.09) possibly_damaging(0.839) TCGA-06-5416-01 17 42152402 42152402 G A G6PC3 Missense_Mutation p.R161Q 0.20 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 17 42164987 42164987 C T HDAC5 Silent p.Q560Q 0.45 TCGA-06-5416-01 17 42170536 42170536 C T HDAC5 Missense_Mutation p.E190K 0.44 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 17 42225292 42225292 C T C17orf53 Missense_Mutation p.R41C 0.43 tolerated(0.98) benign(0) TCGA-06-5416-01 17 42228410 42228410 G T C17orf53 Nonsense_Mutation p.E436* 0.35 TCGA-06-5416-01 17 42266629 42266629 G A TMUB2 Missense_Mutation p.G92D 0.37 tolerated(0.57) benign(0.002) TCGA-06-5416-01 17 42272027 42272027 G A ATXN7L3 Silent p.V258V 0.41 TCGA-06-5416-01 17 42275078 42275078 G A ATXN7L3 Silent p.Y24Y 0.21 TCGA-06-5416-01 17 42293924 42293924 C T UBTF Silent p.K69K 0.44 TCGA-06-5416-01 17 42330518 42330518 C T SLC4A1 Missense_Mutation p.R760Q 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 42335145 42335145 G A SLC4A1 Missense_Mutation p.S438L 0.50 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 17 42393864 42393864 C T RUNDC3A Silent p.G355G 0.47 TCGA-06-5416-01 17 42427675 42427675 C T GRN Silent p.V143V 0.20 TCGA-06-5416-01 17 42461703 42461703 G T ITGA2B Silent p.P289P 0.40 TCGA-06-5416-01 17 42475958 42475958 C A GPATCH8 Nonsense_Mutation p.E1163* 0.21 TCGA-06-5416-01 17 42635850 42635850 C T FZD2 Missense_Mutation p.T265M 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 42757952 42757952 C T CCDC43 Splice_Site p.X163_splice 0.23 TCGA-06-5416-01 17 42818737 42818737 C A DBF4B Silent p.S249S 0.20 TCGA-06-5416-01 17 42818751 42818751 C T DBF4B Missense_Mutation p.S254F 0.43 deleterious(0.03) benign(0.282) TCGA-06-5416-01 17 42852635 42852635 C A ADAM11 Missense_Mutation p.L426M 0.24 deleterious(0.01) possibly_damaging(0.88) TCGA-06-5416-01 17 42949922 42949922 C A EFTUD2 Nonsense_Mutation p.E296* 0.45 TCGA-06-5416-01 17 42979784 42979784 C T CCDC103 Nonsense_Mutation p.R110* 0.19 TCGA-06-5416-01 17 43011933 43011933 C T KIF18B Missense_Mutation p.R210H 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 43013443 43013443 C T KIF18B Silent p.T90T 0.33 TCGA-06-5416-01 17 43215301 43215301 G A ACBD4 Silent p.Q211Q 0.33 TCGA-06-5416-01 17 43246484 43246484 G T HEXIM2 Missense_Mutation p.D57Y 0.45 deleterious_low_confidence(0) probably_damaging(0.959) TCGA-06-5416-01 17 43246889 43246889 G T HEXIM2 Missense_Mutation p.D192Y 0.43 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 17 43311500 43311500 C T FMNL1 Nonsense_Mutation p.Q183* 0.18 TCGA-06-5416-01 17 43321573 43321573 T C FMNL1 Missense_Mutation p.S827P 0.23 deleterious(0.02) possibly_damaging(0.849) TCGA-06-5416-01 17 43332666 43332666 T C SPATA32 Missense_Mutation p.T295A 0.19 tolerated(0.58) benign(0) TCGA-06-5416-01 17 43342087 43342087 G A SPATA32 5'Flank 0.33 TCGA-06-5416-01 17 4337410 4337410 G A SPNS3 Missense_Mutation p.V50I 0.45 tolerated(0.35) benign(0.252) TCGA-06-5416-01 17 43473484 43473484 C A ARHGAP27 Splice_Site p.X410_splice 0.38 TCGA-06-5416-01 17 43530751 43530751 C A PLEKHM1 Missense_Mutation p.G823C 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 43907918 43907918 T G CRHR1 Missense_Mutation p.F260V 0.35 deleterious(0) probably_damaging(0.933) TCGA-06-5416-01 17 4391133 4391133 G A SPNS3 Missense_Mutation p.D495N 0.41 tolerated(0.16) benign(0.006) TCGA-06-5416-01 17 43912012 43912012 G T CRHR1 Missense_Mutation p.R406M 0.18 deleterious(0) possibly_damaging(0.827) TCGA-06-5416-01 17 43923283 43923283 C A SPPL2C Missense_Mutation p.F337L 0.24 tolerated(0.67) benign(0.002) TCGA-06-5416-01 17 4455557 4455557 G T MYBBP1A Silent p.S256S 0.47 TCGA-06-5416-01 17 44828897 44828897 G A NSF Missense_Mutation p.R691H 0.39 tolerated(0.31) benign(0.308) TCGA-06-5416-01 17 44828967 44828967 C T NSF Silent p.I714I 0.30 TCGA-06-5416-01 17 44950050 44950050 C T WNT9B Missense_Mutation p.A82V 0.15 tolerated(1) benign(0.005) TCGA-06-5416-01 17 44953906 44953906 G A WNT9B Missense_Mutation p.G299D 0.49 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 44954030 44954030 C T WNT9B Silent p.Y340Y 0.23 TCGA-06-5416-01 17 45006934 45006934 C G GOSR2 Missense_Mutation p.D26E 0.20 tolerated(0.26) benign(0.042) TCGA-06-5416-01 17 45104958 45104958 G T RP11-156P1.3 Intron 0.06 TCGA-06-5416-01 17 45209673 45209674 - T CDC27 Frame_Shift_Ins p.A667Sfs*3 0.31 TCGA-06-5416-01 17 45229206 45229206 G T CDC27 Missense_Mutation p.L352I 0.04 tolerated(0.4) benign(0.007) TCGA-06-5416-01 17 45297350 45297350 C T MYL4 Silent p.L82L 0.56 TCGA-06-5416-01 17 45384951 45384951 G A ITGB3 Missense_Mutation p.R750Q 0.25 deleterious(0.02) probably_damaging(0.99) TCGA-06-5416-01 17 45384983 45384983 G A ITGB3 Missense_Mutation p.A761T 0.18 tolerated(0.11) possibly_damaging(0.775) TCGA-06-5416-01 17 4539060 4539060 G T ALOX15 Silent p.I385I 0.22 TCGA-06-5416-01 17 45421576 45421576 G T EFCAB13 Nonsense_Mutation p.E118* 0.23 TCGA-06-5416-01 17 4542224 4542224 C T ALOX15 Missense_Mutation p.A155T 0.29 tolerated(0.47) benign(0.012) TCGA-06-5416-01 17 4542846 4542846 C A ALOX15 Missense_Mutation p.K72N 0.41 tolerated(0.07) benign(0.035) TCGA-06-5416-01 17 4544912 4544912 G A ALOX15 Missense_Mutation p.A12V 0.38 deleterious(0.04) benign(0.001) TCGA-06-5416-01 17 45481927 45481927 G A EFCAB13 Splice_Site p.X721_splice 0.43 TCGA-06-5416-01 17 45507345 45507345 G A EFCAB13 Intron 0.51 TCGA-06-5416-01 17 45507447 45507447 C A EFCAB13 Intron 0.56 TCGA-06-5416-01 17 45681273 45681273 C A NPEPPS Intron 0.46 TCGA-06-5416-01 17 45682832 45682832 A G NPEPPS Missense_Mutation p.D670G 0.41 tolerated(0.06) benign(0.098) TCGA-06-5416-01 17 45682885 45682885 G A NPEPPS Missense_Mutation p.E688K 0.17 tolerated(0.31) benign(0.014) TCGA-06-5416-01 17 4575055 4575055 C A PELP1 Missense_Mutation p.Q1077H 0.19 unknown(0) TCGA-06-5416-01 17 4586189 4586189 C T PELP1 Missense_Mutation p.R160Q 0.63 probably_damaging(0.958) TCGA-06-5416-01 17 45892691 45892691 C T OSBPL7 Missense_Mutation p.E383K 0.28 tolerated(0.15) benign(0.033) TCGA-06-5416-01 17 45917709 45917709 C T SCRN2 Silent p.S68S 0.46 TCGA-06-5416-01 17 4594190 4594190 A G PELP1 Missense_Mutation p.V138A 0.40 possibly_damaging(0.904) TCGA-06-5416-01 17 46196434 46196434 G A SNX11 Missense_Mutation p.R142Q 0.22 tolerated(0.32) benign(0.015) TCGA-06-5416-01 17 46198903 46198903 G T SNX11 3'UTR 0.16 TCGA-06-5416-01 17 4646744 4646744 C T ZMYND15 Missense_Mutation p.R431C 0.47 tolerated(0.06) possibly_damaging(0.707) TCGA-06-5416-01 17 4648204 4648204 G T ZMYND15 Missense_Mutation p.R634M 0.19 deleterious(0.01) benign(0.357) TCGA-06-5416-01 17 4648627 4648627 C T ZMYND15 Missense_Mutation p.R680C 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 465963 465963 G A VPS53 Missense_Mutation p.R446W 0.20 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 17 46607792 46607792 G T HOXB1 Missense_Mutation p.L159I 0.21 tolerated(0.2) benign(0.293) TCGA-06-5416-01 17 46621099 46621099 T G HOXB2 Silent p.G134G 0.19 TCGA-06-5416-01 17 46628086 46628086 G A HOXB3 Silent p.Y302Y 0.44 TCGA-06-5416-01 17 46629678 46629678 C T HOXB3 Silent p.S53S 0.15 TCGA-06-5416-01 17 46669742 46669742 G A HOXB5 Silent p.F213F 0.48 TCGA-06-5416-01 17 46691845 46691845 G A HOXB8 Silent p.C74C 0.47 TCGA-06-5416-01 17 4675299 4675299 C T TM4SF5 Silent p.L28L 0.20 TCGA-06-5416-01 17 46804363 46804363 C T HOXB13 Missense_Mutation p.R215H 0.18 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 17 4686501 4686501 G A TM4SF5 3'UTR 0.44 TCGA-06-5416-01 17 46871653 46871653 A C TTLL6 Intron 0.13 TCGA-06-5416-01 17 46919207 46919207 G A CALCOCO2 Silent p.Q46Q 0.45 TCGA-06-5416-01 17 46973164 46973164 C A ATP5G1 3'UTR 0.42 TCGA-06-5416-01 17 47000243 47000243 G A UBE2Z Missense_Mutation p.D280N 0.53 deleterious(0.05) benign(0.178) TCGA-06-5416-01 17 47075092 47075092 C T IGF2BP1 5'UTR 0.14 TCGA-06-5416-01 17 47122386 47122386 C T IGF2BP1 Missense_Mutation p.R452C 0.42 deleterious(0.03) probably_damaging(0.975) TCGA-06-5416-01 17 47295142 47295142 C T ABI3 Silent p.I109I 0.42 TCGA-06-5416-01 17 47394763 47394763 C A ZNF652 Nonsense_Mutation p.E109* 0.23 TCGA-06-5416-01 17 47583739 47583739 C T NGFR Missense_Mutation p.S96L 0.45 tolerated(0.24) benign(0.01) TCGA-06-5416-01 17 48051106 48051106 G T DLX4 Missense_Mutation p.K174N 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 4805129 4805129 C T C17orf107 3'UTR 0.25 TCGA-06-5416-01 17 4805170 4805170 C T C17orf107 3'UTR 0.20 TCGA-06-5416-01 17 48072404 48072404 G T DLX3 5'UTR 0.18 TCGA-06-5416-01 17 48133941 48133941 G A ITGA3 Silent p.G46G 0.35 TCGA-06-5416-01 17 48148850 48148850 C T ITGA3 Silent p.S309S 0.52 TCGA-06-5416-01 17 48264157 48264157 C T COL1A1 Missense_Mutation p.D1220N 0.44 unknown(0) TCGA-06-5416-01 17 48264846 48264846 C T COL1A1 Missense_Mutation p.R1141Q 0.60 unknown(0) TCGA-06-5416-01 17 48264868 48264868 C T COL1A1 Missense_Mutation p.A1134T 0.34 unknown(0) TCGA-06-5416-01 17 48270360 48270360 C T COL1A1 Missense_Mutation p.A606T 0.16 unknown(0) TCGA-06-5416-01 17 48272411 48272411 C T COL1A1 Silent p.E450E 0.13 TCGA-06-5416-01 17 4841327 4841327 C A SLC25A11 Missense_Mutation p.K260N 0.19 tolerated(0.08) benign(0.018) TCGA-06-5416-01 17 4842376 4842376 C T SLC25A11 Missense_Mutation p.G76D 0.43 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 17 48450594 48450594 C A EME1 5'UTR 0.40 TCGA-06-5416-01 17 48453165 48453165 C T EME1 Missense_Mutation p.T199I 0.42 tolerated(0.07) benign(0.111) TCGA-06-5416-01 17 48453502 48453502 C T EME1 Missense_Mutation p.A284V 0.44 tolerated(0.13) benign(0.043) TCGA-06-5416-01 17 4845733 4845733 G A RNF167 Missense_Mutation p.R88Q 0.17 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 17 48546083 48546083 C T CHAD Missense_Mutation p.S31N 0.48 tolerated(0.41) benign(0.001) TCGA-06-5416-01 17 48549790 48549790 C T ACSF2 Missense_Mutation p.A442V 0.36 tolerated(0.97) probably_damaging(1) TCGA-06-5416-01 17 48551125 48551125 C T ACSF2 Silent p.L525L 0.22 TCGA-06-5416-01 17 48594034 48594034 C A MYCBPAP Silent p.A103A 0.38 TCGA-06-5416-01 17 4859425 4859425 G A ENO3 Missense_Mutation p.E352K 0.41 deleterious_low_confidence(0.02) possibly_damaging(0.803) TCGA-06-5416-01 17 48596386 48596386 A G MYCBPAP Missense_Mutation p.Y278C 0.23 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 17 48600465 48600465 C T MYCBPAP Nonsense_Mutation p.R518* 0.19 TCGA-06-5416-01 17 48614332 48614332 C T EPN3 Missense_Mutation p.R139W 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 48625067 48625067 C A SPATA20 Intron 0.27 TCGA-06-5416-01 17 48625966 48625966 G A SPATA20 Silent p.P116P 0.63 TCGA-06-5416-01 17 48633086 48633086 C T SPATA20 3'UTR 0.41 TCGA-06-5416-01 17 48649336 48649336 C T CACNA1G Silent p.V228V 0.26 TCGA-06-5416-01 17 48673953 48673953 G A CACNA1G Missense_Mutation p.D1004N 0.17 deleterious(0.03) benign(0.349) TCGA-06-5416-01 17 48685356 48685356 C T CACNA1G Nonsense_Mutation p.R1561* 0.48 TCGA-06-5416-01 17 48696305 48696305 C A CACNA1G Missense_Mutation p.P1906H 0.31 tolerated(0.4) benign(0.276) TCGA-06-5416-01 17 48753087 48753087 C T ABCC3 Missense_Mutation p.A937V 0.29 tolerated(0.35) benign(0.004) TCGA-06-5416-01 17 48753731 48753731 C T ABCC3 Missense_Mutation p.R1054C 0.42 deleterious(0.01) probably_damaging(0.932) TCGA-06-5416-01 17 48761407 48761407 G A ABCC3 Missense_Mutation p.G1351D 0.53 tolerated(0.09) benign(0.248) TCGA-06-5416-01 17 48778051 48778051 C T ANKRD40 Missense_Mutation p.R54Q 0.26 deleterious(0.04) probably_damaging(0.968) TCGA-06-5416-01 17 48917430 48917430 C T WFIKKN2 Missense_Mutation p.R261C 0.16 deleterious(0.04) probably_damaging(0.939) TCGA-06-5416-01 17 48941234 48941234 G T TOB1 Missense_Mutation p.P49T 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 49059905 49059905 G A SPAG9 Missense_Mutation p.P1073S 0.19 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 17 4906064 4906064 G A KIF1C Missense_Mutation p.R216H 0.32 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 17 49233032 49233032 G A NME1 Missense_Mutation p.R31H 0.41 tolerated(0.05) benign(0.039) TCGA-06-5416-01 17 4926946 4926946 C T KIF1C Missense_Mutation p.R938C 0.20 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-06-5416-01 17 4995353 4995353 G A ZFP3 Missense_Mutation p.R185Q 0.22 deleterious(0.03) probably_damaging(0.985) TCGA-06-5416-01 17 4996370 4996370 A C ZFP3 3'UTR 0.22 TCGA-06-5416-01 17 50008395 50008395 G A CA10 Silent p.F78F 0.42 TCGA-06-5416-01 17 5041419 5041419 G A USP6 Missense_Mutation p.R310H 0.43 tolerated_low_confidence(0.1) possibly_damaging(0.812) TCGA-06-5416-01 17 5041528 5041528 G A USP6 Silent p.T346T 0.44 TCGA-06-5416-01 17 5042866 5042866 C T USP6 Silent p.G465G 0.23 TCGA-06-5416-01 17 5048057 5048057 C T USP6 Missense_Mutation p.L631F 0.43 deleterious_low_confidence(0.02) possibly_damaging(0.548) TCGA-06-5416-01 17 5071323 5071323 G T USP6 Nonsense_Mutation p.E1045* 0.40 TCGA-06-5416-01 17 5076386 5076386 T C USP6 3'UTR 0.20 TCGA-06-5416-01 17 51900580 51900580 G T KIF2B Missense_Mutation p.E62D 0.21 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 17 51900823 51900823 G T KIF2B Missense_Mutation p.K143N 0.18 tolerated(0.16) possibly_damaging(0.717) TCGA-06-5416-01 17 5235304 5235304 G A RABEP1 Missense_Mutation p.R75Q 0.43 tolerated(1) benign(0.001) TCGA-06-5416-01 17 5238587 5238587 G T RABEP1 Missense_Mutation p.R159I 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 17 5264573 5264573 C T RABEP1 Missense_Mutation p.P389L 0.37 deleterious(0) benign(0.305) TCGA-06-5416-01 17 5280539 5280539 T C RABEP1 Silent p.C718C 0.10 TCGA-06-5416-01 17 5292149 5292149 C T NUP88 Missense_Mutation p.R539H 0.19 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 17 5298228 5298228 C T NUP88 Silent p.T455T 0.17 TCGA-06-5416-01 17 5338220 5338220 C T C1QBP Silent p.S150S 0.41 TCGA-06-5416-01 17 53471678 53471678 G T MMD 3'UTR 0.17 TCGA-06-5416-01 17 53488629 53488629 C A MMD Missense_Mutation p.K86N 0.16 tolerated(0.26) possibly_damaging(0.891) TCGA-06-5416-01 17 53488762 53488762 G A MMD Missense_Mutation p.A42V 0.35 deleterious(0.04) possibly_damaging(0.559) TCGA-06-5416-01 17 5359339 5359339 C T DHX33 Missense_Mutation p.R338Q 0.27 tolerated(0.14) possibly_damaging(0.735) TCGA-06-5416-01 17 5365842 5365842 C T DHX33 Missense_Mutation p.D159N 0.15 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 17 53798225 53798225 G A TMEM100 Silent p.I69I 0.22 TCGA-06-5416-01 17 5392521 5392521 T G MIS12 Missense_Mutation p.D113E 0.21 tolerated(1) benign(0) TCGA-06-5416-01 17 5392779 5392779 G A MIS12 Silent p.S199S 0.44 TCGA-06-5416-01 17 5421188 5421188 C T NLRP1 Missense_Mutation p.R1312Q 0.44 tolerated(0.08) probably_damaging(0.968) TCGA-06-5416-01 17 5424847 5424847 C T NLRP1 Silent p.R1260R 0.40 TCGA-06-5416-01 17 5456811 5456811 C T NLRP1 Missense_Mutation p.R808K 0.44 tolerated(0.79) benign(0.081) TCGA-06-5416-01 17 5461730 5461730 G A NLRP1 Silent p.R762R 0.45 TCGA-06-5416-01 17 5462708 5462708 C T NLRP1 Silent p.A436A 0.21 TCGA-06-5416-01 17 54912164 54912164 C T DGKE Missense_Mutation p.A3V 0.40 tolerated_low_confidence(0.18) benign(0.044) TCGA-06-5416-01 17 54940172 54940172 C T DGKE 3'UTR 0.23 TCGA-06-5416-01 17 54940232 54940232 C A DGKE 3'UTR 0.34 TCGA-06-5416-01 17 54969181 54969181 G A TRIM25 Silent p.F591F 0.26 TCGA-06-5416-01 17 54978810 54978810 C T TRIM25 Missense_Mutation p.G353R 0.19 tolerated(1) benign(0) TCGA-06-5416-01 17 55016287 55016287 G T COIL 3'UTR 0.22 TCGA-06-5416-01 17 55027059 55027059 C A COIL Nonsense_Mutation p.E475* 0.19 TCGA-06-5416-01 17 55339544 55339544 G A MSI2 Silent p.A101A 0.20 TCGA-06-5416-01 17 55951040 55951040 C A CUEDC1 Missense_Mutation p.R168I 0.18 tolerated(0.06) benign(0.439) TCGA-06-5416-01 17 56083861 56083861 G A SRSF1 Silent p.R74R 0.38 TCGA-06-5416-01 17 56164580 56164580 G T DYNLL2 Missense_Mutation p.K43N 0.15 deleterious(0.01) possibly_damaging(0.616) TCGA-06-5416-01 17 56274333 56274333 C T EPX Missense_Mutation p.R279C 0.22 deleterious(0.04) benign(0.005) TCGA-06-5416-01 17 56274409 56274409 C T EPX Missense_Mutation p.A304V 0.39 deleterious(0.04) benign(0.032) TCGA-06-5416-01 17 56348184 56348184 G A MPO Nonsense_Mutation p.R691* 0.50 TCGA-06-5416-01 17 56349126 56349126 G A MPO Silent p.I640I 0.25 TCGA-06-5416-01 17 56386052 56386052 G T BZRAP1 Silent p.A1527A 0.15 TCGA-06-5416-01 17 56389642 56389642 T C BZRAP1 Missense_Mutation p.N847S 0.45 tolerated(0.14) benign(0.103) TCGA-06-5416-01 17 56405191 56405191 G A BZRAP1 Nonsense_Mutation p.R31* 0.41 TCGA-06-5416-01 17 56597776 56597776 C T SEPT4 3'UTR 0.32 TCGA-06-5416-01 17 56606647 56606647 C A SEPT4 Intron 0.22 TCGA-06-5416-01 17 56663285 56663285 G A TEX14 Nonsense_Mutation p.R989* 0.18 TCGA-06-5416-01 17 56663290 56663290 C A TEX14 Missense_Mutation p.W987L 0.13 deleterious(0.05) benign(0.341) TCGA-06-5416-01 17 56688630 56688630 C A TEX14 Missense_Mutation p.R365I 0.23 tolerated(0.05) benign(0.26) TCGA-06-5416-01 17 56700250 56700250 C T TEX14 Silent p.P125P 0.45 TCGA-06-5416-01 17 56707839 56707839 G A TEX14 Silent p.F71F 0.42 TCGA-06-5416-01 17 56772468 56772468 G A RAD51C Missense_Mutation p.D108N 0.25 deleterious(0.05) probably_damaging(0.986) TCGA-06-5416-01 17 56810038 56810038 A C RAD51C Intron 0.44 TCGA-06-5416-01 17 57057478 57057478 G A PPM1E Missense_Mutation p.D452N 0.22 deleterious(0.05) possibly_damaging(0.588) TCGA-06-5416-01 17 57058274 57058274 G T PPM1E Missense_Mutation p.R717I 0.45 deleterious_low_confidence(0) possibly_damaging(0.862) TCGA-06-5416-01 17 57058460 57058460 T C PPM1E 3'UTR 0.47 TCGA-06-5416-01 17 57105983 57105983 C T TRIM37 Missense_Mutation p.E684K 0.40 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-06-5416-01 17 57125087 57125087 C A TRIM37 Missense_Mutation p.A542S 0.21 deleterious_low_confidence(0.03) probably_damaging(0.913) TCGA-06-5416-01 17 57247159 57247159 G A PRR11 Missense_Mutation p.E16K 0.44 tolerated_low_confidence(1) unknown(0) TCGA-06-5416-01 17 57272706 57272706 G A PRR11 Silent p.P253P 0.20 TCGA-06-5416-01 17 57290392 57290392 C T SMG8 Silent p.F736F 0.41 TCGA-06-5416-01 17 57290747 57290747 C T SMG8 Nonsense_Mutation p.R855* 0.21 TCGA-06-5416-01 17 57430604 57430604 C T YPEL2 5'UTR 0.31 TCGA-06-5416-01 17 57647959 57647959 G T DHX40 Nonsense_Mutation p.E121* 0.21 TCGA-06-5416-01 17 57682531 57682531 C A DHX40 Missense_Mutation p.H653N 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 57721781 57721781 C T CLTC Nonsense_Mutation p.R63* 0.22 TCGA-06-5416-01 17 57763064 57763064 C T CLTC Silent p.Y1574Y 0.43 TCGA-06-5416-01 17 57771221 57771221 C T CLTC 3'UTR 0.44 TCGA-06-5416-01 17 57851120 57851120 C T VMP1 Silent p.I196I 0.19 TCGA-06-5416-01 17 57955475 57955475 C T TUBD1 Missense_Mutation p.R253Q 0.43 tolerated(0.07) benign(0.024) TCGA-06-5416-01 17 57958443 57958443 C A TUBD1 Nonsense_Mutation p.E117* 0.45 TCGA-06-5416-01 17 57963550 57963550 C A TUBD1 Missense_Mutation p.V72F 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 57990147 57990147 T C RPS6KB1 Silent p.G98G 0.42 TCGA-06-5416-01 17 58149611 58149611 T G HEATR6 Missense_Mutation p.K222Q 0.24 tolerated(0.09) benign(0.072) TCGA-06-5416-01 17 58236890 58236890 G A CA4 3'UTR 0.33 TCGA-06-5416-01 17 58257972 58257972 G A USP32 Silent p.G1525G 0.41 TCGA-06-5416-01 17 58260600 58260600 G A USP32 Missense_Mutation p.S1350L 0.22 tolerated_low_confidence(0.28) benign(0.04) TCGA-06-5416-01 17 58260798 58260798 C T USP32 Missense_Mutation p.R1284Q 0.17 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 17 58275710 58275710 C A USP32 Missense_Mutation p.K1115N 0.43 tolerated(0.48) probably_damaging(0.991) TCGA-06-5416-01 17 58297150 58297150 T C USP32 Splice_Site p.X584_splice 0.48 TCGA-06-5416-01 17 58313588 58313588 G A USP32 Nonsense_Mutation p.R384* 0.47 TCGA-06-5416-01 17 58508604 58508604 G T C17orf64 Nonsense_Mutation p.E230* 0.16 TCGA-06-5416-01 17 58508679 58508679 G A C17orf64 3'UTR 0.44 TCGA-06-5416-01 17 58700883 58700883 G A PPM1D Silent p.A158A 0.23 TCGA-06-5416-01 17 58740668 58740668 G T PPM1D Nonsense_Mutation p.E525* 0.20 TCGA-06-5416-01 17 59445847 59445847 C T BCAS3 Missense_Mutation p.S877F 0.20 deleterious(0) possibly_damaging(0.806) TCGA-06-5416-01 17 59482816 59482816 G A TBX2 Silent p.G435G 0.38 TCGA-06-5416-01 17 59489437 59489437 C T C17orf82 Missense_Mutation p.S34F 0.32 deleterious_low_confidence(0) possibly_damaging(0.683) TCGA-06-5416-01 17 59557455 59557455 G T TBX4 Nonsense_Mutation p.E266* 0.22 TCGA-06-5416-01 17 59560294 59560294 G A TBX4 Missense_Mutation p.R352Q 0.13 deleterious(0.03) possibly_damaging(0.544) TCGA-06-5416-01 17 5984029 5984029 C T WSCD1 Silent p.F17F 0.51 TCGA-06-5416-01 17 59944834 59944834 C T INTS2 3'UTR 0.44 TCGA-06-5416-01 17 59958473 59958473 C T INTS2 Missense_Mutation p.D725N 0.25 deleterious(0) benign(0.107) TCGA-06-5416-01 17 60062127 60062127 C T MED13 Missense_Mutation p.S859N 0.15 tolerated(0.16) benign(0.001) TCGA-06-5416-01 17 60346401 60346401 C T TBC1D3P2 RNA 0.36 TCGA-06-5416-01 17 60685432 60685432 A C TLK2 Missense_Mutation p.I668L 0.20 deleterious(0.04) possibly_damaging(0.684) TCGA-06-5416-01 17 60755978 60755978 T G MRC2 Missense_Mutation p.F722L 0.38 deleterious(0) possibly_damaging(0.557) TCGA-06-5416-01 17 60782830 60782830 C A MARCH10 Intron 0.47 TCGA-06-5416-01 17 60814024 60814024 G A MARCH10 Missense_Mutation p.S402L 0.43 tolerated(0.08) benign(0.027) TCGA-06-5416-01 17 61391933 61391933 C T TANC2 Silent p.F374F 0.23 TCGA-06-5416-01 17 61476187 61476187 C A TANC2 Silent p.V1007V 0.28 TCGA-06-5416-01 17 61482522 61482522 G A TANC2 Missense_Mutation p.C1050Y 0.17 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 17 61513424 61513424 C T CYB561 Missense_Mutation p.A98T 0.20 tolerated(0.24) possibly_damaging(0.869) TCGA-06-5416-01 17 61559844 61559844 G A ACE Missense_Mutation p.R379Q 0.47 tolerated(0.34) benign(0.01) TCGA-06-5416-01 17 61561244 61561244 C T ACE Missense_Mutation p.H541Y 0.19 deleterious(0.04) probably_damaging(0.998) TCGA-06-5416-01 17 61566050 61566050 C A ACE Missense_Mutation p.L783M 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 17 61568711 61568711 G A ACE Missense_Mutation p.A961T 0.39 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 17 61601689 61601689 C A KCNH6 Missense_Mutation p.A89D 0.17 tolerated(0.17) possibly_damaging(0.491) TCGA-06-5416-01 17 61607501 61607501 C T KCNH6 Silent p.D119D 0.33 TCGA-06-5416-01 17 61611628 61611628 G A KCNH6 Missense_Mutation p.A353T 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 61681976 61681976 G A TACO1 Silent p.T121T 0.16 TCGA-06-5416-01 17 61723415 61723415 G A MAP3K3 Missense_Mutation p.E81K 0.13 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 61744393 61744393 G A MAP3K3 Missense_Mutation p.E190K 0.40 tolerated(0.13) benign(0.013) TCGA-06-5416-01 17 61762901 61762901 G T MAP3K3 Nonsense_Mutation p.E252* 0.13 TCGA-06-5416-01 17 61766990 61766990 G A MAP3K3 Missense_Mutation p.E351K 0.50 tolerated(0.78) benign(0.002) TCGA-06-5416-01 17 61784756 61784756 G T STRADA Missense_Mutation p.L202M 0.40 tolerated(0.08) probably_damaging(1) TCGA-06-5416-01 17 61864623 61864623 G T DDX42 Nonsense_Mutation p.E72* 0.24 TCGA-06-5416-01 17 61895405 61895405 G T DDX42 Nonsense_Mutation p.G822* 0.22 TCGA-06-5416-01 17 61899366 61899366 G A FTSJ3 Nonsense_Mutation p.Q485* 0.25 TCGA-06-5416-01 17 61957709 61957709 C T GH2 3'UTR 0.39 TCGA-06-5416-01 17 61958085 61958085 G A GH2 Missense_Mutation p.S168F 0.45 deleterious_low_confidence(0.01) benign(0.015) TCGA-06-5416-01 17 61972426 61972426 G A CSH1 Missense_Mutation p.R204C 0.45 deleterious(0.01) benign(0.329) TCGA-06-5416-01 17 61987068 61987068 C T CSHL1 3'Flank 0.52 TCGA-06-5416-01 17 61988303 61988303 G A CSHL1 Intron 0.19 TCGA-06-5416-01 17 62018120 62018120 G A SCN4A 3'UTR 0.44 TCGA-06-5416-01 17 62050260 62050260 C T SCN4A 5'UTR 0.31 TCGA-06-5416-01 17 62228227 62228227 C A TEX2 Nonsense_Mutation p.E1086* 0.47 TCGA-06-5416-01 17 62230405 62230405 C T TEX2 Missense_Mutation p.E1021K 0.17 deleterious(0) possibly_damaging(0.743) TCGA-06-5416-01 17 62265629 62265629 C T TEX2 Missense_Mutation p.D782N 0.17 deleterious(0.01) possibly_damaging(0.897) TCGA-06-5416-01 17 62270995 62270995 C T TEX2 Nonsense_Mutation p.W700* 0.15 TCGA-06-5416-01 17 62271133 62271133 C A TEX2 Missense_Mutation p.E654D 0.48 tolerated(0.16) benign(0.012) TCGA-06-5416-01 17 62462563 62462563 G T MILR1 Missense_Mutation p.E32D 0.37 tolerated(0.26) benign(0.007) TCGA-06-5416-01 17 62500377 62500377 C A DDX5 Silent p.P90P 0.36 TCGA-06-5416-01 17 62523293 62523293 G A CEP95 Missense_Mutation p.G406E 0.18 tolerated(0.35) benign(0.046) TCGA-06-5416-01 17 62530778 62530778 C T CEP95 Missense_Mutation p.R665C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 62754388 62754388 G A hsa-mir-6080 RNA 0.46 TCGA-06-5416-01 17 62758752 62758752 T C hsa-mir-6080 RNA 0.15 TCGA-06-5416-01 17 62892236 62892236 C T LRRC37A3 Silent p.Q380Q 0.32 TCGA-06-5416-01 17 62893075 62893075 C T LRRC37A3 Missense_Mutation p.E101K 0.23 deleterious(0) benign(0.086) TCGA-06-5416-01 17 63010798 63010798 G A GNA13 Silent p.F237F 0.17 TCGA-06-5416-01 17 63185420 63185420 C A RGS9 Missense_Mutation p.A224D 0.36 tolerated(0.28) benign(0.003) TCGA-06-5416-01 17 63525995 63525995 T C AXIN2 3'UTR 0.56 TCGA-06-5416-01 17 6386927 6386927 C T PITPNM3 Missense_Mutation p.R166Q 0.48 tolerated(0.06) benign(0.035) TCGA-06-5416-01 17 6387003 6387003 C A PITPNM3 Missense_Mutation p.D141Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 17 63898378 63898378 G A CEP112 Silent p.S685S 0.24 TCGA-06-5416-01 17 64024469 64024469 A G CEP112 Silent p.L520L 0.44 TCGA-06-5416-01 17 64066057 64066057 C A CEP112 Missense_Mutation p.Q277H 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 17 64125886 64125886 C T CEP112 Missense_Mutation p.R207H 0.37 tolerated(0.05) possibly_damaging(0.828) TCGA-06-5416-01 17 641276 641276 C T FAM57A Missense_Mutation p.P133S 0.25 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 17 64179399 64179399 C A CEP112 Nonsense_Mutation p.E7* 0.42 TCGA-06-5416-01 17 64225436 64225436 C T APOH Missense_Mutation p.R21Q 0.45 deleterious(0.02) benign(0.002) TCGA-06-5416-01 17 6428729 6428729 G A PITPNM3 Missense_Mutation p.S58F 0.36 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 17 64299083 64299083 A T PRKCA Missense_Mutation p.K38N 0.17 deleterious(0.01) benign(0.098) TCGA-06-5416-01 17 64728885 64728885 G A PRKCA Missense_Mutation p.R333Q 0.49 tolerated(0.18) benign(0.001) TCGA-06-5416-01 17 64734885 64734885 C A PRKCA Silent p.R412R 0.35 TCGA-06-5416-01 17 64783073 64783073 C A PRKCA Missense_Mutation p.A565D 0.53 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 6493914 6493914 G A KIAA0753 Missense_Mutation p.S826F 0.17 deleterious(0) benign(0.025) TCGA-06-5416-01 17 6499496 6499496 G A KIAA0753 Silent p.R780R 0.23 TCGA-06-5416-01 17 65040969 65040969 G A CACNG1 Missense_Mutation p.D65N 0.40 deleterious(0.03) benign(0.005) TCGA-06-5416-01 17 65103715 65103715 A C HELZ Missense_Mutation p.L1604R 0.45 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 17 65119179 65119179 G A HELZ Silent p.S1179S 0.48 TCGA-06-5416-01 17 65185773 65185773 G A HELZ Missense_Mutation p.P266S 0.21 tolerated(0.87) benign(0.014) TCGA-06-5416-01 17 65212050 65212050 T A HELZ Missense_Mutation p.K71I 0.36 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-06-5416-01 17 6531657 6531657 G A KIAA0753 Silent p.I166I 0.20 TCGA-06-5416-01 17 65343511 65343511 G A PSMD12 Nonsense_Mutation p.R201* 0.25 TCGA-06-5416-01 17 65353456 65353456 A C PSMD12 Missense_Mutation p.I87S 0.21 deleterious(0) possibly_damaging(0.493) TCGA-06-5416-01 17 65362554 65362554 G T PSMD12 Missense_Mutation p.L28I 0.17 tolerated(1) benign(0.012) TCGA-06-5416-01 17 65714152 65714152 A G NOL11 Missense_Mutation p.K30R 0.44 tolerated(0.22) benign(0.025) TCGA-06-5416-01 17 65733197 65733197 G A NOL11 Missense_Mutation p.R385Q 0.46 deleterious(0.03) benign(0.232) TCGA-06-5416-01 17 65850699 65850699 A G BPTF Silent p.P419P 0.17 TCGA-06-5416-01 17 65871085 65871085 G T BPTF Missense_Mutation p.D605Y 0.40 possibly_damaging(0.536) TCGA-06-5416-01 17 65907579 65907579 C A BPTF Silent p.V1193V 0.27 TCGA-06-5416-01 17 65907848 65907848 C A BPTF Missense_Mutation p.S1283Y 0.17 possibly_damaging(0.747) TCGA-06-5416-01 17 65955946 65955946 A G BPTF Missense_Mutation p.D2739G 0.44 probably_damaging(0.987) TCGA-06-5416-01 17 6609962 6609962 G A SLC13A5 Missense_Mutation p.R123W 0.44 tolerated(0.32) benign(0.002) TCGA-06-5416-01 17 66303602 66303602 G A ARSG 5'UTR 0.42 TCGA-06-5416-01 17 66339827 66339827 G T ARSG Nonsense_Mutation p.G101* 0.17 TCGA-06-5416-01 17 66416672 66416672 T G ARSG 3'UTR 0.28 TCGA-06-5416-01 17 66417871 66417871 A G WIPI1 3'UTR 0.20 TCGA-06-5416-01 17 66431786 66431786 G A WIPI1 Missense_Mutation p.S199F 0.42 deleterious(0) possibly_damaging(0.797) TCGA-06-5416-01 17 6676499 6676499 G T XAF1 3'UTR 0.21 TCGA-06-5416-01 17 6683457 6683457 G A FBXO39 Silent p.E90E 0.22 TCGA-06-5416-01 17 66877330 66877330 T C ABCA8 Silent p.G1283G 0.20 TCGA-06-5416-01 17 66878023 66878023 G T ABCA8 Silent p.V1269V 0.44 TCGA-06-5416-01 17 6690224 6690224 G A FBXO39 Silent p.E383E 0.43 TCGA-06-5416-01 17 66925316 66925316 G A ABCA8 Silent p.V333V 0.42 TCGA-06-5416-01 17 66986991 66986991 C T ABCA9 Missense_Mutation p.R1275Q 0.19 tolerated(0.33) benign(0.003) TCGA-06-5416-01 17 67029986 67029986 G T ABCA9 Missense_Mutation p.S386Y 0.40 tolerated(0.35) probably_damaging(0.928) TCGA-06-5416-01 17 6703531 6703531 C T TEKT1 Missense_Mutation p.A358T 0.28 deleterious(0.02) possibly_damaging(0.817) TCGA-06-5416-01 17 67047181 67047181 C A ABCA9 Missense_Mutation p.Q29H 0.19 deleterious(0) benign(0.057) TCGA-06-5416-01 17 67246653 67246653 C A ABCA5 Nonsense_Mutation p.E1549* 0.24 TCGA-06-5416-01 17 67250595 67250595 C T ABCA5 Missense_Mutation p.D1369N 0.47 tolerated(0.41) benign(0.263) TCGA-06-5416-01 17 68128160 68128160 G T KCNJ16 5'UTR 0.56 TCGA-06-5416-01 17 68129119 68129119 C T KCNJ16 Silent p.S297S 0.21 TCGA-06-5416-01 17 68171388 68171388 G A KCNJ2 Missense_Mutation p.A70T 0.42 tolerated(0.38) benign(0.002) TCGA-06-5416-01 17 68171592 68171592 G A KCNJ2 Missense_Mutation p.E138K 0.25 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 17 68171733 68171733 A C KCNJ2 Missense_Mutation p.K185Q 0.39 tolerated(0.42) probably_damaging(1) TCGA-06-5416-01 17 68171751 68171751 G A KCNJ2 Missense_Mutation p.E191K 0.24 deleterious(0) possibly_damaging(0.908) TCGA-06-5416-01 17 686424 686424 C A RNMTL1 Missense_Mutation p.A139D 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 6930877 6930877 G A BCL6B Missense_Mutation p.R460H 0.43 deleterious(0) probably_damaging(0.91) TCGA-06-5416-01 17 6978343 6978343 C A CLEC10A 3'UTR 0.25 TCGA-06-5416-01 17 6978803 6978803 C T CLEC10A Intron 0.24 TCGA-06-5416-01 17 70117691 70117691 C A SOX9 Missense_Mutation p.F53L 0.23 tolerated(1) benign(0.011) TCGA-06-5416-01 17 7017541 7017541 C A ASGR2 Missense_Mutation p.D7Y 0.50 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 17 704251 704251 C T NXN Missense_Mutation p.A416T 0.41 tolerated(0.06) benign(0.013) TCGA-06-5416-01 17 7099558 7099558 T C DLG4 Missense_Mutation p.K471E 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-06-5416-01 17 71166659 71166659 A G SSTR2 3'UTR 0.10 TCGA-06-5416-01 17 71204626 71204626 T C FAM104A 3'UTR 0.21 TCGA-06-5416-01 17 71232704 71232704 G A C17orf80 Silent p.T361T 0.45 TCGA-06-5416-01 17 71239100 71239100 G T C17orf80 Nonsense_Mutation p.G563* 0.12 TCGA-06-5416-01 17 71239108 71239108 C T C17orf80 Silent p.F565F 0.31 TCGA-06-5416-01 17 7130538 7130538 G A DVL2 Missense_Mutation p.R472W 0.20 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 17 71346868 71346868 G A SDK2 Silent p.G1940G 0.44 TCGA-06-5416-01 17 71354230 71354230 C T SDK2 Missense_Mutation p.A1861T 0.46 tolerated(0.16) probably_damaging(0.982) TCGA-06-5416-01 17 71375403 71375403 G A SDK2 Silent p.V1631V 0.27 TCGA-06-5416-01 17 7139701 7139701 T C PHF23 Missense_Mutation p.D182G 0.40 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-06-5416-01 17 7150129 7150129 A G CTDNEP1 Missense_Mutation p.V114A 0.47 deleterious(0.05) possibly_damaging(0.654) TCGA-06-5416-01 17 7158217 7158217 C A ELP5 Intron 0.52 TCGA-06-5416-01 17 7163973 7163973 G T CLDN7 Missense_Mutation p.P154H 0.40 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 17 7187125 7187125 C A SLC2A4 Missense_Mutation p.A131D 0.42 deleterious(0.02) benign(0.013) TCGA-06-5416-01 17 7189027 7189027 C T SLC2A4 Nonsense_Mutation p.R376* 0.13 TCGA-06-5416-01 17 7189794 7189794 G A SLC2A4 Missense_Mutation p.G459D 0.21 tolerated(0.17) benign(0.321) TCGA-06-5416-01 17 7193364 7193364 C A YBX2 Missense_Mutation p.E257D 0.24 tolerated(0.39) benign(0.217) TCGA-06-5416-01 17 7210396 7210396 A G EIF5A Missense_Mutation p.T11A 0.33 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 17 7217622 7217622 C T GPS2 Missense_Mutation p.R102Q 0.45 tolerated(0.06) benign(0.01) TCGA-06-5416-01 17 72227060 72227060 C T TTYH2 Silent p.S112S 0.40 TCGA-06-5416-01 17 72240141 72240141 C T TTYH2 Silent p.L253L 0.22 TCGA-06-5416-01 17 72246122 72246122 C T TTYH2 Silent p.V326V 0.45 TCGA-06-5416-01 17 72248384 72248384 C T TTYH2 Silent p.D376D 0.18 TCGA-06-5416-01 17 7227472 7227472 C T NEURL4 Missense_Mutation p.D673N 0.24 deleterious(0.01) possibly_damaging(0.681) TCGA-06-5416-01 17 72340419 72340419 C T KIF19 Missense_Mutation p.R172W 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 72341065 72341065 G A KIF19 Missense_Mutation p.D250N 0.50 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 17 72346589 72346589 G T KIF19 Missense_Mutation p.Q421H 0.45 tolerated(0.19) benign(0.003) TCGA-06-5416-01 17 72351363 72351363 G A KIF19 Missense_Mutation p.G970D 0.43 deleterious_low_confidence(0.04) benign(0.021) TCGA-06-5416-01 17 72351366 72351366 G A KIF19 Missense_Mutation p.G971D 0.44 tolerated_low_confidence(0.11) benign(0.016) TCGA-06-5416-01 17 72363735 72363735 T C GPR142 Missense_Mutation p.Y31H 0.45 deleterious_low_confidence(0.02) benign(0.047) TCGA-06-5416-01 17 72366742 72366742 C T GPR142 Silent p.I147I 0.21 TCGA-06-5416-01 17 7245598 7245598 G A ACAP1 Missense_Mutation p.C79Y 0.16 tolerated(0.05) possibly_damaging(0.907) TCGA-06-5416-01 17 72518715 72518715 C A CD300LB 3'UTR 0.33 TCGA-06-5416-01 17 7256529 7256529 C A KCTD11 Missense_Mutation p.L90I 0.40 tolerated(0.11) benign(0.197) TCGA-06-5416-01 17 72613293 72613293 C T CD300E Missense_Mutation p.D118N 0.31 tolerated(0.05) benign(0.312) TCGA-06-5416-01 17 72791173 72791173 C A TMEM104 Missense_Mutation p.F150L 0.21 tolerated(1) benign(0.001) TCGA-06-5416-01 17 72791220 72791220 C T TMEM104 Missense_Mutation p.A166V 0.21 deleterious(0.04) possibly_damaging(0.897) TCGA-06-5416-01 17 72832395 72832395 C T TMEM104 Missense_Mutation p.R354C 0.43 deleterious(0) benign(0.022) TCGA-06-5416-01 17 72848281 72848281 C T GRIN2C Missense_Mutation p.R290H 0.62 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 17 72874596 72874596 A C FADS6 Missense_Mutation p.V306G 0.20 deleterious(0.05) probably_damaging(0.95) TCGA-06-5416-01 17 72926545 72926545 C T OTOP2 Missense_Mutation p.T272I 0.15 tolerated(0.37) benign(0.039) TCGA-06-5416-01 17 72927121 72927121 C T OTOP2 Missense_Mutation p.P464L 0.15 tolerated(0.08) benign(0.118) TCGA-06-5416-01 17 72939708 72939708 C A OTOP3 Missense_Mutation p.L232M 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 72948438 72948438 C T HID1 Silent p.S690S 0.22 TCGA-06-5416-01 17 72952049 72952049 A G HID1 Missense_Mutation p.S492P 0.06 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 72956222 72956222 C T HID1 Missense_Mutation p.A284T 0.25 deleterious(0.01) possibly_damaging(0.864) TCGA-06-5416-01 17 73008954 73008954 C T ICT1 Missense_Mutation p.A58V 0.20 tolerated(0.11) benign(0.02) TCGA-06-5416-01 17 73038338 73038338 C T ATP5H Missense_Mutation p.D53N 0.16 tolerated(0.24) probably_damaging(0.987) TCGA-06-5416-01 17 73094161 73094161 C T SLC16A5 Silent p.R76R 0.50 TCGA-06-5416-01 17 73096445 73096445 C T SLC16A5 Silent p.F229F 0.36 TCGA-06-5416-01 17 73132173 73132173 C T HN1 Missense_Mutation p.R157H 0.48 tolerated_low_confidence(0.35) benign(0.043) TCGA-06-5416-01 17 7317742 7317742 C T NLGN2 Silent p.F196F 0.21 TCGA-06-5416-01 17 7318983 7318983 C T NLGN2 Silent p.S397S 0.18 TCGA-06-5416-01 17 73208094 73208094 C T NUP85 Nonsense_Mutation p.R100* 0.46 TCGA-06-5416-01 17 73227941 73227941 C T NUP85 Silent p.V421V 0.33 TCGA-06-5416-01 17 73235466 73235466 C T GGA3 Silent p.S590S 0.19 TCGA-06-5416-01 17 73237095 73237095 C T GGA3 Silent p.A330A 0.21 TCGA-06-5416-01 17 73258097 73258097 C T MRPS7 Intron 0.34 TCGA-06-5416-01 17 73269452 73269452 G T SLC25A19 3'UTR 0.42 TCGA-06-5416-01 17 7330886 7330886 A G C17orf74 3'UTR 0.38 TCGA-06-5416-01 17 7340642 7340642 G A TMEM102 Silent p.G448G 0.25 TCGA-06-5416-01 17 73486347 73486347 C A KIAA0195 Silent p.L329L 0.21 TCGA-06-5416-01 17 73488585 73488585 G A KIAA0195 Missense_Mutation p.E543K 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 17 73489924 73489924 C A KIAA0195 Silent p.I778I 0.07 TCGA-06-5416-01 17 73500372 73500372 C T CASKIN2 Missense_Mutation p.R464H 0.45 tolerated(0.1) benign(0) TCGA-06-5416-01 17 7350213 7350213 G A CHRNB1 Missense_Mutation p.R102H 0.51 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 17 73564676 73564676 G A LLGL2 Missense_Mutation p.A386T 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 73624488 73624488 C T RECQL5 Missense_Mutation p.R872H 0.12 tolerated(0.06) benign(0.033) TCGA-06-5416-01 17 7365474 7365474 C T ZBTB4 Missense_Mutation p.A943T 0.47 probably_damaging(0.985) TCGA-06-5416-01 17 73700882 73700882 G T SAP30BP Missense_Mutation p.K216N 0.21 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 17 73736459 73736459 C T ITGB4 Missense_Mutation p.R823C 0.47 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 17 73748601 73748601 G A ITGB4 Missense_Mutation p.D1351N 0.20 tolerated_low_confidence(0.26) probably_damaging(0.999) TCGA-06-5416-01 17 73752598 73752598 C T ITGB4 Silent p.R1599R 0.19 TCGA-06-5416-01 17 73752825 73752825 G A ITGB4 Silent p.P1646P 0.45 TCGA-06-5416-01 17 73780945 73780945 G T UNK 5'UTR 0.48 TCGA-06-5416-01 17 73815809 73815809 G A UNK Missense_Mutation p.A531T 0.24 deleterious(0.04) benign(0.012) TCGA-06-5416-01 17 73832887 73832887 C A UNC13D Nonsense_Mutation p.E390* 0.44 TCGA-06-5416-01 17 73887125 73887125 T C TRIM65 Missense_Mutation p.D430G 0.24 deleterious(0.02) probably_damaging(0.964) TCGA-06-5416-01 17 73906792 73906792 C T FBF1 3'UTR 0.34 TCGA-06-5416-01 17 73921499 73921499 G A FBF1 Silent p.D285D 0.18 TCGA-06-5416-01 17 73998207 73998207 C A CDK3 Missense_Mutation p.P100H 0.22 deleterious(0.02) benign(0.048) TCGA-06-5416-01 17 73999336 73999336 C T CDK3 Missense_Mutation p.R217C 0.23 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 17 74003823 74003823 A G EVPL Silent p.G1821G 0.13 TCGA-06-5416-01 17 74004679 74004679 C T EVPL Missense_Mutation p.R1536Q 0.32 deleterious(0) possibly_damaging(0.776) TCGA-06-5416-01 17 7401032 7401032 C T POLR2A Missense_Mutation p.R349W 0.36 probably_damaging(1) TCGA-06-5416-01 17 74014540 74014540 C T EVPL Missense_Mutation p.A476T 0.30 tolerated(0.49) benign(0.059) TCGA-06-5416-01 17 74073083 74073083 C A GALR2 Missense_Mutation p.F245L 0.46 deleterious(0.01) possibly_damaging(0.861) TCGA-06-5416-01 17 74077174 74077174 G T EXOC7 3'Flank 0.31 TCGA-06-5416-01 17 74077986 74077986 C A ZACN Missense_Mutation p.L302M 0.43 tolerated(0.11) probably_damaging(0.96) TCGA-06-5416-01 17 74080139 74080139 G A EXOC7 Missense_Mutation p.R685C 0.46 tolerated(0.05) possibly_damaging(0.492) TCGA-06-5416-01 17 74148487 74148487 C T RNF157 Missense_Mutation p.A624T 0.37 tolerated_low_confidence(0.08) benign(0.003) TCGA-06-5416-01 17 74287163 74287163 C A QRICH2 Missense_Mutation p.K1049N 0.14 deleterious(0.04) benign(0.11) TCGA-06-5416-01 17 74382559 74382559 C T SPHK1 Missense_Mutation p.A201V 0.41 deleterious(0) possibly_damaging(0.905) TCGA-06-5416-01 17 74392305 74392305 C T UBE2O Missense_Mutation p.E905K 0.22 deleterious(0.01) benign(0.41) TCGA-06-5416-01 17 74464859 74464859 C T AANAT Missense_Mutation p.P56S 0.23 tolerated_low_confidence(0.05) benign(0.297) TCGA-06-5416-01 17 74470587 74470587 G T RHBDF2 Missense_Mutation p.F473L 0.18 deleterious(0) possibly_damaging(0.694) TCGA-06-5416-01 17 74527090 74527090 G A CYGB Silent p.G170G 0.27 TCGA-06-5416-01 17 74621483 74621483 G A ST6GALNAC1 Missense_Mutation p.R578W 0.20 probably_damaging(0.969) TCGA-06-5416-01 17 74681240 74681240 G A MXRA7 Silent p.G138G 0.16 TCGA-06-5416-01 17 7468306 7468306 G A SENP3 Missense_Mutation p.G329D 0.16 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 17 7468359 7468359 T C SENP3 Missense_Mutation p.F347L 0.23 deleterious(0.02) probably_damaging(0.956) TCGA-06-5416-01 17 7473785 7473785 C T SENP3 Missense_Mutation p.R485C 0.47 deleterious(0.05) probably_damaging(0.998) TCGA-06-5416-01 17 74772531 74772531 G T MFSD11 Missense_Mutation p.D365Y 0.51 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 74774301 74774301 G A MFSD11 Missense_Mutation p.S406N 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 7480777 7480777 G A EIF4A1 Missense_Mutation p.R247H 0.24 deleterious(0.04) benign(0.001) TCGA-06-5416-01 17 7481169 7481169 C T EIF4A1 Nonsense_Mutation p.R311* 0.36 TCGA-06-5416-01 17 74868812 74868812 C A MGAT5B 5'UTR 0.45 TCGA-06-5416-01 17 74934214 74934214 C T MGAT5B Missense_Mutation p.R534C 0.37 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 17 74936835 74936835 G A MGAT5B Missense_Mutation p.A594T 0.47 tolerated(0.11) benign(0.049) TCGA-06-5416-01 17 75202379 75202379 C T SEC14L1 Missense_Mutation p.A413V 0.48 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 17 7529784 7529784 C A SAT2 Missense_Mutation p.R165I 0.43 tolerated(0.15) benign(0.007) TCGA-06-5416-01 17 7536069 7536069 G T SHBG Splice_Site p.X285_splice 0.19 TCGA-06-5416-01 17 7578212 7578212 G A TP53 Nonsense_Mutation p.R213* 0.96 TCGA-06-5416-01 17 76045375 76045375 A C TNRC6C Missense_Mutation p.I78L 0.44 tolerated(0.36) benign(0.005) TCGA-06-5416-01 17 76045454 76045454 C T TNRC6C Missense_Mutation p.A104V 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 76046402 76046402 G A TNRC6C Missense_Mutation p.R420Q 0.44 tolerated(0.43) probably_damaging(0.997) TCGA-06-5416-01 17 76046473 76046473 C A TNRC6C Missense_Mutation p.L444M 0.47 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 76047160 76047160 G T TNRC6C Missense_Mutation p.D673Y 0.19 deleterious(0) possibly_damaging(0.837) TCGA-06-5416-01 17 76094521 76094521 T C TNRC6C Silent p.S1504S 0.37 TCGA-06-5416-01 17 76122886 76122886 C T TMC6 Missense_Mutation p.D10N 0.16 tolerated(0.73) benign(0.002) TCGA-06-5416-01 17 76201562 76201562 G A AFMID Missense_Mutation p.V203M 0.22 tolerated(0.28) benign(0.113) TCGA-06-5416-01 17 76202072 76202072 G A AFMID Missense_Mutation p.D281N 0.24 tolerated(0.38) benign(0.029) TCGA-06-5416-01 17 76392448 76392448 T C PGS1 Silent p.G131G 0.33 TCGA-06-5416-01 17 7640572 7640572 G A DNAH2 Missense_Mutation p.R389Q 0.38 possibly_damaging(0.882) TCGA-06-5416-01 17 7643799 7643799 G A DNAH2 Missense_Mutation p.E480K 0.45 benign(0.076) TCGA-06-5416-01 17 76450770 76450770 C T DNAH17 Silent p.T3382T 0.41 TCGA-06-5416-01 17 7646343 7646343 G A DNAH2 Missense_Mutation p.R596Q 0.44 probably_damaging(0.997) TCGA-06-5416-01 17 76472764 76472764 G T DNAH17 Missense_Mutation p.R2668S 0.39 benign(0.383) TCGA-06-5416-01 17 76475609 76475609 C T DNAH17 Missense_Mutation p.A2606T 0.41 benign(0.003) TCGA-06-5416-01 17 76502853 76502853 G T DNAH17 Silent p.V1580V 0.22 TCGA-06-5416-01 17 76503682 76503682 G A DNAH17 Missense_Mutation p.T1477M 0.48 benign(0.09) TCGA-06-5416-01 17 76510873 76510873 G T DNAH17 Missense_Mutation p.L1362I 0.16 probably_damaging(0.924) TCGA-06-5416-01 17 76525611 76525611 G A DNAH17 Silent p.I1150I 0.45 TCGA-06-5416-01 17 76526474 76526474 G A DNAH17 Missense_Mutation p.R1079C 0.18 possibly_damaging(0.884) TCGA-06-5416-01 17 76563141 76563141 G A DNAH17 Silent p.V464V 0.22 TCGA-06-5416-01 17 7657770 7657770 G T DNAH2 Intron 0.27 TCGA-06-5416-01 17 7662930 7662930 T C DNAH2 Splice_Site p.X879_splice 0.47 TCGA-06-5416-01 17 7663132 7663132 G T DNAH2 Missense_Mutation p.Q887H 0.04 benign(0.289) TCGA-06-5416-01 17 7667484 7667484 C T DNAH2 Missense_Mutation p.L1077F 0.24 probably_damaging(0.999) TCGA-06-5416-01 17 76695019 76695019 G T CYTH1 Silent p.I194I 0.20 TCGA-06-5416-01 17 7673918 7673918 A G DNAH2 Missense_Mutation p.D1381G 0.16 probably_damaging(0.982) TCGA-06-5416-01 17 7689994 7689994 C T DNAH2 Missense_Mutation p.T2152M 0.39 benign(0.006) TCGA-06-5416-01 17 7690298 7690298 G A DNAH2 Missense_Mutation p.D2184N 0.44 probably_damaging(1) TCGA-06-5416-01 17 7695341 7695341 G T DNAH2 Missense_Mutation p.R2336M 0.24 possibly_damaging(0.541) TCGA-06-5416-01 17 7695346 7695346 G A DNAH2 Missense_Mutation p.D2338N 0.41 probably_damaging(1) TCGA-06-5416-01 17 7695594 7695594 G A DNAH2 Missense_Mutation p.D2360N 0.19 benign(0.063) TCGA-06-5416-01 17 76989653 76989653 G A CANT1 Silent p.Y395Y 0.47 TCGA-06-5416-01 17 77044084 77044084 G A C1QTNF1 Missense_Mutation p.E254K 0.23 deleterious(0) possibly_damaging(0.858) TCGA-06-5416-01 17 7705261 7705261 G T DNAH2 Missense_Mutation p.K2966N 0.50 possibly_damaging(0.875) TCGA-06-5416-01 17 7719975 7719975 G T DNAH2 Missense_Mutation p.M3272I 0.45 possibly_damaging(0.507) TCGA-06-5416-01 17 7720706 7720706 G T DNAH2 Missense_Mutation p.E3331D 0.22 benign(0.042) TCGA-06-5416-01 17 7734449 7734449 C T DNAH2 Silent p.L4092L 0.20 TCGA-06-5416-01 17 7762052 7762052 G A CYB5D1 Silent p.Q122Q 0.47 TCGA-06-5416-01 17 77708900 77708900 C T ENPP7 Missense_Mutation p.A153V 0.17 tolerated(0.22) benign(0.06) TCGA-06-5416-01 17 77755942 77755942 A G CBX2 Intron 0.20 TCGA-06-5416-01 17 77758811 77758811 C T CBX2 Silent p.S523S 0.20 TCGA-06-5416-01 17 7792380 7792380 C A CHD3 Intron 0.20 TCGA-06-5416-01 17 78032354 78032354 C T CCDC40 Silent p.I407I 0.20 TCGA-06-5416-01 17 78055442 78055442 A G CCDC40 Missense_Mutation p.I554V 0.38 tolerated(0.21) benign(0.013) TCGA-06-5416-01 17 78078418 78078418 G A GAA Silent p.R11R 0.42 TCGA-06-5416-01 17 78081447 78081447 G A GAA Missense_Mutation p.E262K 0.49 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 17 78082171 78082171 G A GAA Silent p.E346E 0.46 TCGA-06-5416-01 17 78086425 78086425 G A GAA Silent p.S601S 0.37 TCGA-06-5416-01 17 78092596 78092596 G A GAA Missense_Mutation p.D931N 0.21 tolerated(0.29) benign(0.004) TCGA-06-5416-01 17 7809999 7809999 C T CHD3 Missense_Mutation p.S1555F 0.22 possibly_damaging(0.788) TCGA-06-5416-01 17 7810558 7810558 A G CHD3 Missense_Mutation p.E1653G 0.23 benign(0.403) TCGA-06-5416-01 17 7811018 7811018 G T CHD3 Missense_Mutation p.R1734I 0.47 benign(0.308) TCGA-06-5416-01 17 78112043 78112043 G A EIF4A3 Silent p.F255F 0.42 TCGA-06-5416-01 17 78156499 78156499 G A CARD14 Missense_Mutation p.A87T 0.27 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 78172532 78172532 G A CARD14 Intron 0.19 TCGA-06-5416-01 17 78176119 78176119 G A CARD14 Missense_Mutation p.D707N 0.22 tolerated(0.28) probably_damaging(0.997) TCGA-06-5416-01 17 78184779 78184779 C T SGSH Silent p.S327S 0.22 TCGA-06-5416-01 17 78188007 78188007 G T SGSH Missense_Mutation p.D209E 0.58 tolerated(0.06) probably_damaging(1) TCGA-06-5416-01 17 78201630 78201630 G A SLC26A11 Missense_Mutation p.V203I 0.42 tolerated(0.34) benign(0.008) TCGA-06-5416-01 17 78222380 78222380 G A SLC26A11 Missense_Mutation p.E477K 0.36 tolerated(0.24) benign(0.009) TCGA-06-5416-01 17 78280966 78280966 A C RNF213 Missense_Mutation p.E822D 0.22 benign(0.014) TCGA-06-5416-01 17 78324150 78324150 G T RNF213 Missense_Mutation p.D3380Y 0.44 probably_damaging(0.99) TCGA-06-5416-01 17 7836627 7836627 G A CNTROB Missense_Mutation p.R77Q 0.17 tolerated(0.14) benign(0.281) TCGA-06-5416-01 17 7849150 7849150 G A CNTROB Silent p.L613L 0.49 TCGA-06-5416-01 17 7850924 7850924 G A CNTROB Missense_Mutation p.D677N 0.44 tolerated_low_confidence(0.08) benign(0.015) TCGA-06-5416-01 17 78681781 78681781 G T RPTOR Missense_Mutation p.E163D 0.22 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 17 78796930 78796930 G A RPTOR Missense_Mutation p.R348Q 0.52 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 7910377 7910377 G T GUCY2D Splice_Site p.X460_splice 0.24 TCGA-06-5416-01 17 79167789 79167789 C T AZI1 Missense_Mutation p.R753Q 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 79410277 79410277 G T RP11-1055B8.7 Missense_Mutation p.K634N 0.27 possibly_damaging(0.647) TCGA-06-5416-01 17 79412481 79412481 C T RP11-1055B8.7 Silent p.G979G 0.71 TCGA-06-5416-01 17 79429891 79429891 C T RP11-1055B8.7 Silent p.I2503I 0.36 TCGA-06-5416-01 17 7948681 7948681 G A ALOX15B Silent p.P325P 0.46 TCGA-06-5416-01 17 79526340 79526340 A G NPLOC4 Missense_Mutation p.F591S 0.21 deleterious(0) possibly_damaging(0.762) TCGA-06-5416-01 17 79573741 79573741 C T NPLOC4 Silent p.P210P 0.25 TCGA-06-5416-01 17 79632086 79632086 G T OXLD1 3'UTR 0.47 TCGA-06-5416-01 17 79687231 79687231 G T SLC25A10 3'UTR 0.33 TCGA-06-5416-01 17 7977058 7977058 G A ALOX12B Nonsense_Mutation p.R558* 0.20 TCGA-06-5416-01 17 79804488 79804488 G A P4HB Silent p.I291I 0.15 TCGA-06-5416-01 17 79827070 79827070 T C ARHGDIA Missense_Mutation p.T132A 0.22 deleterious(0.05) possibly_damaging(0.459) TCGA-06-5416-01 17 7983419 7983419 T C AC129492.6 Missense_Mutation p.S34P 0.68 possibly_damaging(0.514) TCGA-06-5416-01 17 7983584 7983584 T C AC129492.6 Missense_Mutation p.F89L 0.43 benign(0.302) TCGA-06-5416-01 17 7984526 7984526 G T AC129492.6 3'UTR 0.22 TCGA-06-5416-01 17 79862805 79862805 C T PCYT2 Silent p.A376A 0.29 TCGA-06-5416-01 17 79870319 79870319 T G SIRT7 Missense_Mutation p.K392N 0.16 deleterious_low_confidence(0) probably_damaging(0.95) TCGA-06-5416-01 17 79910950 79910950 C T NOTUM Missense_Mutation p.E460K 0.20 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 17 79973184 79973184 C T ASPSCR1 Silent p.G529G 0.42 TCGA-06-5416-01 17 79977048 79977048 C A STRA13 3'UTR 0.17 TCGA-06-5416-01 17 80011795 80011795 C A GPS1 Missense_Mutation p.L100M 0.24 deleterious(0.01) possibly_damaging(0.88) TCGA-06-5416-01 17 80011837 80011837 G T GPS1 Missense_Mutation p.A114S 0.18 deleterious(0.04) possibly_damaging(0.652) TCGA-06-5416-01 17 80017840 80017840 G A DUS1L Silent p.F384F 0.18 TCGA-06-5416-01 17 80038282 80038282 G A FASN Silent p.F2337F 0.67 TCGA-06-5416-01 17 80038768 80038768 C A FASN Missense_Mutation p.G2209V 0.42 tolerated(0.31) benign(0.006) TCGA-06-5416-01 17 80040535 80040535 G A FASN Silent p.V1929V 0.45 TCGA-06-5416-01 17 80044314 80044314 G A FASN Missense_Mutation p.S1183L 0.53 tolerated(0.53) benign(0.011) TCGA-06-5416-01 17 80046970 80046970 C T FASN Missense_Mutation p.A727T 0.27 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 17 80051104 80051104 C T FASN Missense_Mutation p.D216N 0.31 deleterious(0) probably_damaging(1) TCGA-06-5416-01 17 8014767 8014767 G T ALOXE3 Nonsense_Mutation p.C421* 0.22 TCGA-06-5416-01 17 8018328 8018328 C T ALOXE3 Missense_Mutation p.S293N 0.41 tolerated(0.1) benign(0.015) TCGA-06-5416-01 17 80194667 80194667 C A SLC16A3 Missense_Mutation p.L96I 0.17 tolerated(0.13) possibly_damaging(0.782) TCGA-06-5416-01 17 80273177 80273177 A G CD7 3'UTR 0.36 TCGA-06-5416-01 17 80274574 80274574 G T CD7 Silent p.V122V 0.44 TCGA-06-5416-01 17 80280808 80280808 G A SECTM1 Silent p.V161V 0.40 TCGA-06-5416-01 17 80320283 80320283 G T TEX19 Missense_Mutation p.S86I 0.23 deleterious(0.01) benign(0.101) TCGA-06-5416-01 17 80397511 80397511 G A HEXDC Missense_Mutation p.D302N 0.16 deleterious(0.02) probably_damaging(0.928) TCGA-06-5416-01 17 80401861 80401861 C T C17orf62 3'UTR 0.17 TCGA-06-5416-01 17 80426746 80426746 G T NARF Missense_Mutation p.R120I 0.18 deleterious(0) possibly_damaging(0.883) TCGA-06-5416-01 17 8047167 8047167 C A PER1 Missense_Mutation p.S830I 0.41 tolerated(0.13) benign(0.079) TCGA-06-5416-01 17 8052944 8052944 C T PER1 Missense_Mutation p.R230Q 0.22 deleterious(0.03) benign(0.025) TCGA-06-5416-01 17 80540799 80540799 G A FOXK2 Silent p.P364P 0.28 TCGA-06-5416-01 17 80678216 80678216 G A FN3KRP Missense_Mutation p.R121H 0.21 tolerated(0.54) possibly_damaging(0.532) TCGA-06-5416-01 17 80708384 80708384 T C FN3K Missense_Mutation p.V228A 0.39 tolerated(0.54) benign(0) TCGA-06-5416-01 17 80767613 80767613 G A TBCD Missense_Mutation p.R393K 0.34 tolerated(1) benign(0) TCGA-06-5416-01 17 80767615 80767615 G T TBCD Missense_Mutation p.A394S 0.34 deleterious(0) benign(0.017) TCGA-06-5416-01 17 80789561 80789561 G A ZNF750 Missense_Mutation p.S257L 0.41 deleterious(0) possibly_damaging(0.891) TCGA-06-5416-01 17 8092982 8092982 G T C17orf59 Missense_Mutation p.F159L 0.16 deleterious_low_confidence(0) probably_damaging(0.97) TCGA-06-5416-01 17 8093117 8093117 C T C17orf59 Silent p.A114A 0.26 TCGA-06-5416-01 17 8135693 8135693 C A CTC1 Missense_Mutation p.Q682H 0.23 deleterious(0.01) probably_damaging(0.922) TCGA-06-5416-01 17 8138384 8138384 C T CTC1 Missense_Mutation p.E476K 0.19 tolerated(0.21) possibly_damaging(0.705) TCGA-06-5416-01 17 8141393 8141393 G A CTC1 Silent p.I201I 0.41 TCGA-06-5416-01 17 8159873 8159873 C T PFAS Missense_Mutation p.R285W 0.42 tolerated(0.2) benign(0.035) TCGA-06-5416-01 17 8161393 8161393 C T PFAS Silent p.F404F 0.25 TCGA-06-5416-01 17 8172595 8172595 G A PFAS 3'UTR 0.25 TCGA-06-5416-01 17 8216452 8216452 C T ARHGEF15 Missense_Mutation p.R272C 0.23 deleterious_low_confidence(0.04) possibly_damaging(0.708) TCGA-06-5416-01 17 8216499 8216499 G A ARHGEF15 Silent p.R287R 0.19 TCGA-06-5416-01 17 8224367 8224367 G A ARHGEF15 3'UTR 0.17 TCGA-06-5416-01 17 8273644 8273644 G A KRBA2 Missense_Mutation p.S96L 0.18 tolerated(0.63) benign(0.003) TCGA-06-5416-01 17 8354195 8354195 C T NDEL1 Silent p.S208S 0.49 TCGA-06-5416-01 17 8384700 8384700 C T MYH10 Missense_Mutation p.R1735Q 0.18 probably_damaging(0.994) TCGA-06-5416-01 17 8409749 8409749 G A MYH10 Silent p.L1091L 0.46 TCGA-06-5416-01 17 8413165 8413165 G T MYH10 Missense_Mutation p.L1019M 0.42 probably_damaging(0.999) TCGA-06-5416-01 17 8732043 8732043 C T PIK3R6 Missense_Mutation p.G385D 0.63 tolerated(0.33) benign(0.014) TCGA-06-5416-01 17 8770991 8770991 C A PIK3R6 5'UTR 0.19 TCGA-06-5416-01 17 8784265 8784265 A G PIK3R5 Missense_Mutation p.C818R 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 17 8790984 8790984 G A PIK3R5 Missense_Mutation p.R545C 0.55 tolerated(0.67) benign(0.004) TCGA-06-5416-01 17 8791000 8791000 C T PIK3R5 Silent p.R539R 0.31 TCGA-06-5416-01 17 882660 882660 C T NXN Missense_Mutation p.E87K 0.64 deleterious(0.02) probably_damaging(0.989) TCGA-06-5416-01 17 9124485 9124485 A G NTN1 Missense_Mutation p.D471G 0.39 tolerated(0.09) benign(0.008) TCGA-06-5416-01 17 915219 915219 C T ABR Silent p.E656E 0.27 TCGA-06-5416-01 17 9460777 9460777 C T STX8 Silent p.L62L 0.40 TCGA-06-5416-01 17 9479955 9479955 G A WDR16 5'UTR 0.30 TCGA-06-5416-01 17 9497613 9497613 G T WDR16 Missense_Mutation p.D171Y 0.21 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 17 9503481 9503481 C T WDR16 Missense_Mutation p.A245V 0.45 tolerated(0.53) benign(0.001) TCGA-06-5416-01 17 9559719 9559719 G A USP43 Splice_Site p.X169_splice 0.22 TCGA-06-5416-01 17 9603564 9603564 G A USP43 Silent p.E511E 0.29 TCGA-06-5416-01 17 9676174 9676174 C T DHRS7C Missense_Mutation p.D214N 0.19 tolerated(0.27) benign(0.102) TCGA-06-5416-01 17 9737202 9737202 G T GLP2R Nonsense_Mutation p.E90* 0.28 TCGA-06-5416-01 17 9820527 9820527 G A GAS7 3'UTR 0.29 TCGA-06-5416-01 17 9939862 9939862 G T GAS7 Intron 0.61 TCGA-06-5416-01 18 10471676 10471676 G A APCDD1 Missense_Mutation p.R131H 0.42 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 18 10540336 10540336 G A NAPG Missense_Mutation p.R149H 0.21 tolerated(0.06) probably_damaging(0.954) TCGA-06-5416-01 18 10691252 10691252 G A PIEZO2 Silent p.Y2327Y 0.23 TCGA-06-5416-01 18 116900 116900 G T ROCK1P1 RNA 0.14 TCGA-06-5416-01 18 118423 118423 C A ROCK1P1 RNA 0.21 TCGA-06-5416-01 18 11872297 11872297 C A GNAL Missense_Mutation p.F354L 0.20 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 18 11885764 11885764 C T MPPE1 Missense_Mutation p.A307T 0.25 deleterious(0.03) benign(0.248) TCGA-06-5416-01 18 11896986 11896986 C T MPPE1 Missense_Mutation p.R93Q 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 12325235 12325235 G A TUBB6 Silent p.T149T 0.54 TCGA-06-5416-01 18 12429391 12429391 G A SLMO1 Missense_Mutation p.A170T 0.21 tolerated(0.23) benign(0.011) TCGA-06-5416-01 18 12546696 12546696 G A SPIRE1 Missense_Mutation p.R194W 0.38 deleterious(0) possibly_damaging(0.888) TCGA-06-5416-01 18 12673154 12673154 C T CEP76 3'UTR 0.50 TCGA-06-5416-01 18 12678370 12678370 C T CEP76 Missense_Mutation p.R454Q 0.27 tolerated(0.07) benign(0.08) TCGA-06-5416-01 18 12859190 12859190 G A PTPN2 Nonsense_Mutation p.R45* 0.35 TCGA-06-5416-01 18 13068096 13068096 G A CEP192 Missense_Mutation p.A1540T 0.44 deleterious(0.02) possibly_damaging(0.726) TCGA-06-5416-01 18 13087133 13087134 - T CEP192 Frame_Shift_Ins p.S1914Ffs*13 0.31 TCGA-06-5416-01 18 13387661 13387661 C T LDLRAD4 5'UTR 0.18 TCGA-06-5416-01 18 13645270 13645270 G T LDLRAD4 Nonsense_Mutation p.E179* 0.18 TCGA-06-5416-01 18 13645514 13645514 G A LDLRAD4 Missense_Mutation p.G260D 0.15 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 18 13760065 13760065 C T RNMT 3'UTR 0.43 TCGA-06-5416-01 18 13885462 13885462 G A MC2R Missense_Mutation p.S19F 0.38 tolerated(0.07) possibly_damaging(0.627) TCGA-06-5416-01 18 14106233 14106233 G A ZNF519 Silent p.S102S 0.16 TCGA-06-5416-01 18 14179382 14179382 G T ANKRD20A5P 5'Flank 0.19 TCGA-06-5416-01 18 14542990 14542990 G T POTEC Silent p.S52S 0.18 TCGA-06-5416-01 18 14542995 14542995 C T POTEC Missense_Mutation p.D51N 0.08 deleterious_low_confidence(0.02) possibly_damaging(0.555) TCGA-06-5416-01 18 18548749 18548749 C T ROCK1 Missense_Mutation p.R996Q 0.45 tolerated(0.21) possibly_damaging(0.804) TCGA-06-5416-01 18 19110375 19110375 A C ESCO1 Missense_Mutation p.F818V 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 19153550 19153550 G A ESCO1 Nonsense_Mutation p.R419* 0.39 TCGA-06-5416-01 18 19203813 19203813 C T SNRPD1 Missense_Mutation p.R66W 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 19395682 19395682 C T MIB1 Missense_Mutation p.R529C 0.46 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 18 199242 199242 G T USP14 Nonsense_Mutation p.G268* 0.35 TCGA-06-5416-01 18 19997203 19997203 C A CTAGE1 Missense_Mutation p.S191I 0.07 deleterious(0.01) benign(0.238) TCGA-06-5416-01 18 202881 202881 G A USP14 Missense_Mutation p.R293Q 0.19 tolerated(0.05) possibly_damaging(0.905) TCGA-06-5416-01 18 20573550 20573550 C A RBBP8 Missense_Mutation p.P587H 0.44 tolerated(0.06) possibly_damaging(0.669) TCGA-06-5416-01 18 20577588 20577588 C A RBBP8 Silent p.G678G 0.46 TCGA-06-5416-01 18 20586326 20586326 C T RBBP8 Missense_Mutation p.T763I 0.19 tolerated(0.24) benign(0.004) TCGA-06-5416-01 18 20814624 20814624 G T CABLES1 Nonsense_Mutation p.E381* 0.16 TCGA-06-5416-01 18 20837268 20837268 C T CABLES1 Silent p.F613F 0.45 TCGA-06-5416-01 18 20837462 20837462 G A CABLES1 3'UTR 0.31 TCGA-06-5416-01 18 20878016 20878016 C T TMEM241 Silent p.A282A 0.20 TCGA-06-5416-01 18 21095863 21095863 A C C18orf8 Missense_Mutation p.N151T 0.44 tolerated(0.24) benign(0.126) TCGA-06-5416-01 18 21110457 21110457 C A C18orf8 Missense_Mutation p.S592Y 0.43 deleterious(0.01) probably_damaging(0.979) TCGA-06-5416-01 18 21121299 21121299 G T NPC1 Missense_Mutation p.L782I 0.42 tolerated(0.06) benign(0.21) TCGA-06-5416-01 18 21229106 21229106 G T ANKRD29 Missense_Mutation p.L25M 0.30 deleterious(0.02) possibly_damaging(0.782) TCGA-06-5416-01 18 21229135 21229135 G A ANKRD29 Missense_Mutation p.A15V 0.36 tolerated(0.21) probably_damaging(0.989) TCGA-06-5416-01 18 21333684 21333684 G T LAMA3 Splice_Site p.X286_splice 0.20 TCGA-06-5416-01 18 21419845 21419845 G A LAMA3 Silent p.S1096S 0.43 TCGA-06-5416-01 18 21437843 21437843 G A LAMA3 Missense_Mutation p.R1391Q 0.23 benign(0.055) TCGA-06-5416-01 18 21487773 21487773 G A LAMA3 Missense_Mutation p.D2297N 0.50 benign(0.21) TCGA-06-5416-01 18 21534573 21534573 C T LAMA3 Silent p.V3321V 0.19 TCGA-06-5416-01 18 21694581 21694581 G A TTC39C Missense_Mutation p.E350K 0.39 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 18 21739760 21739760 G T CABYR Missense_Mutation p.R289I 0.16 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 18 21946891 21946891 T C OSBPL1A Missense_Mutation p.T83A 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 22048793 22048793 G A HRH4 Missense_Mutation p.E79K 0.41 tolerated(1) benign(0.004) TCGA-06-5416-01 18 22805423 22805423 G A ZNF521 Missense_Mutation p.A820V 0.23 tolerated(0.6) probably_damaging(0.988) TCGA-06-5416-01 18 22805511 22805511 A G ZNF521 Missense_Mutation p.S791P 0.25 deleterious(0.01) possibly_damaging(0.772) TCGA-06-5416-01 18 22805719 22805719 G T ZNF521 Missense_Mutation p.F721L 0.19 tolerated(1) benign(0.062) TCGA-06-5416-01 18 22806179 22806179 G A ZNF521 Missense_Mutation p.S568L 0.18 deleterious(0.01) benign(0.255) TCGA-06-5416-01 18 22807218 22807218 G A ZNF521 Nonsense_Mutation p.Q222* 0.39 TCGA-06-5416-01 18 23807166 23807166 C A TAF4B Missense_Mutation p.A90D 0.19 deleterious(0) possibly_damaging(0.747) TCGA-06-5416-01 18 23969953 23969953 C T TAF4B Silent p.L856L 0.19 TCGA-06-5416-01 18 24441185 24441185 G T AQP4 Silent p.I174I 0.50 TCGA-06-5416-01 18 24496740 24496740 G T CHST9 Missense_Mutation p.T272N 0.19 tolerated(0.11) probably_damaging(0.979) TCGA-06-5416-01 18 24497016 24497016 G T CHST9 Missense_Mutation p.S180Y 0.05 deleterious(0.03) benign(0.015) TCGA-06-5416-01 18 25532085 25532085 T C CDH2 3'UTR 0.45 TCGA-06-5416-01 18 2567000 2567000 C A METTL4 Missense_Mutation p.E72D 0.23 tolerated(0.54) benign(0.001) TCGA-06-5416-01 18 2784496 2784496 C T SMCHD1 Nonsense_Mutation p.R1866* 0.39 TCGA-06-5416-01 18 28588437 28588437 C A DSC3 Nonsense_Mutation p.E440* 0.21 TCGA-06-5416-01 18 28712616 28712616 C A DSC1 Missense_Mutation p.R718I 0.07 tolerated(0.1) possibly_damaging(0.548) TCGA-06-5416-01 18 28713942 28713942 C A DSC1 Missense_Mutation p.K676N 0.17 tolerated(0.37) benign(0) TCGA-06-5416-01 18 28720209 28720209 T G DSC1 Missense_Mutation p.E439A 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 28725740 28725740 C A DSC1 Missense_Mutation p.G258V 0.20 deleterious(0) possibly_damaging(0.585) TCGA-06-5416-01 18 28919759 28919760 - G DSG1 Frame_Shift_Ins p.N488* 0.34 TCGA-06-5416-01 18 28934638 28934638 C A DSG1 Missense_Mutation p.L827I 0.40 deleterious(0.03) benign(0.087) TCGA-06-5416-01 18 28968333 28968333 C T DSG4 Nonsense_Mutation p.R74* 0.30 TCGA-06-5416-01 18 28986121 28986121 A G DSG4 Missense_Mutation p.N573S 0.17 deleterious(0.03) benign(0.234) TCGA-06-5416-01 18 28986214 28986214 A G DSG4 Missense_Mutation p.Y604C 0.26 tolerated(0.05) possibly_damaging(0.789) TCGA-06-5416-01 18 28986285 28986285 C A DSG4 Missense_Mutation p.L628I 0.43 deleterious(0.02) possibly_damaging(0.782) TCGA-06-5416-01 18 28993060 28993060 C A DSG4 Nonsense_Mutation p.Y894* 0.09 TCGA-06-5416-01 18 29037074 29037074 A G DSG3 Missense_Mutation p.N68S 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 18 29126552 29126552 C A DSG2 Missense_Mutation p.S1068Y 0.23 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 18 2913303 2913303 C T EMILIN2 Silent p.N1021N 0.51 TCGA-06-5416-01 18 29207066 29207066 A C B4GALT6 Missense_Mutation p.F265L 0.43 deleterious(0) possibly_damaging(0.499) TCGA-06-5416-01 18 2934427 2934427 T C LPIN2 Missense_Mutation p.H397R 0.38 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 18 29432619 29432619 T G TRAPPC8 Missense_Mutation p.K1147N 0.42 deleterious(0.02) possibly_damaging(0.557) TCGA-06-5416-01 18 29433909 29433909 C A TRAPPC8 Splice_Site p.X1113_splice 0.15 TCGA-06-5416-01 18 2945674 2945674 G A LPIN2 Intron 0.48 TCGA-06-5416-01 18 2945973 2945973 C T LPIN2 Intron 0.23 TCGA-06-5416-01 18 2946492 2946492 C T LPIN2 Intron 0.21 TCGA-06-5416-01 18 29488799 29488799 C T TRAPPC8 Missense_Mutation p.R347K 0.41 deleterious(0.03) possibly_damaging(0.528) TCGA-06-5416-01 18 29493383 29493383 C A TRAPPC8 Missense_Mutation p.Q240H 0.44 tolerated(0.12) possibly_damaging(0.688) TCGA-06-5416-01 18 29496337 29496337 C T TRAPPC8 Missense_Mutation p.R172Q 0.25 tolerated(0.57) benign(0.025) TCGA-06-5416-01 18 29511409 29511409 G T TRAPPC8 Missense_Mutation p.P79T 0.20 tolerated(0.06) benign(0.006) TCGA-06-5416-01 18 29511475 29511475 C T TRAPPC8 Missense_Mutation p.D57N 0.45 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 18 29706655 29706655 G A RNF138 Splice_Site p.X188_splice 0.41 TCGA-06-5416-01 18 29847719 29847719 T C GAREM 3'UTR 0.55 TCGA-06-5416-01 18 29848369 29848369 G A GAREM Missense_Mutation p.A699V 0.43 tolerated(0.06) possibly_damaging(0.827) TCGA-06-5416-01 18 29848557 29848557 G A GAREM Silent p.S636S 0.37 TCGA-06-5416-01 18 29867863 29867863 C T GAREM Missense_Mutation p.E233K 0.14 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 18 30091733 30091733 C T WBP11P1 RNA 0.22 TCGA-06-5416-01 18 30092537 30092537 G A WBP11P1 RNA 0.19 TCGA-06-5416-01 18 30825370 30825370 C T CCDC178 Missense_Mutation p.E478K 0.40 deleterious(0.01) possibly_damaging(0.607) TCGA-06-5416-01 18 30873176 30873176 C T CCDC178 Missense_Mutation p.A375T 0.29 tolerated(0.38) benign(0.019) TCGA-06-5416-01 18 30903502 30903502 C A CCDC178 Missense_Mutation p.E325D 0.20 tolerated(0.48) benign(0.027) TCGA-06-5416-01 18 30913243 30913243 C A CCDC178 Missense_Mutation p.K258N 0.41 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 18 31324562 31324562 C T ASXL3 Missense_Mutation p.R1584C 0.39 benign(0.002) TCGA-06-5416-01 18 31432858 31432858 A C NOL4 Missense_Mutation p.F622C 0.45 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 31803053 31803053 G A NOL4 Silent p.F55F 0.18 TCGA-06-5416-01 18 3189048 3189048 C A MYOM1 Nonsense_Mutation p.E157* 0.22 TCGA-06-5416-01 18 32822428 32822428 G A ZNF397 5'UTR 0.19 TCGA-06-5416-01 18 32825246 32825246 G T ZNF397 Missense_Mutation p.A193S 0.16 tolerated(0.59) benign(0.004) TCGA-06-5416-01 18 32844416 32844416 G A ZSCAN30 5'UTR 0.24 TCGA-06-5416-01 18 32886725 32886725 G A ZNF271 RNA 0.40 TCGA-06-5416-01 18 32887801 32887801 C A ZNF271 RNA 0.41 TCGA-06-5416-01 18 32887833 32887833 A C ZNF271 RNA 0.49 TCGA-06-5416-01 18 32948391 32948391 G A ZNF396 Missense_Mutation p.A309V 0.22 tolerated_low_confidence(0.21) benign(0) TCGA-06-5416-01 18 33048524 33048524 T A INO80C 3'UTR 0.20 TCGA-06-5416-01 18 33060501 33060501 C A INO80C Missense_Mutation p.E97D 0.43 deleterious(0.03) possibly_damaging(0.772) TCGA-06-5416-01 18 33243630 33243630 G T GALNT1 Nonsense_Mutation p.E60* 0.19 TCGA-06-5416-01 18 33263377 33263377 G T GALNT1 Missense_Mutation p.E168D 0.40 tolerated(0.81) benign(0.001) TCGA-06-5416-01 18 33271151 33271151 C T GALNT1 Missense_Mutation p.S385F 0.38 tolerated(0.25) benign(0.042) TCGA-06-5416-01 18 33573221 33573221 C A RPRD1A Nonsense_Mutation p.E278* 0.50 TCGA-06-5416-01 18 33779897 33779897 G A MOCOS Missense_Mutation p.S184N 0.36 tolerated(0.65) benign(0.003) TCGA-06-5416-01 18 33780267 33780267 G A MOCOS Silent p.P307P 0.46 TCGA-06-5416-01 18 34335081 34335081 G T FHOD3 Splice_Site p.X1236_splice 0.18 TCGA-06-5416-01 18 34802030 34802030 C T KIAA1328 Missense_Mutation p.A525V 0.23 deleterious(0.01) possibly_damaging(0.822) TCGA-06-5416-01 18 34854517 34854517 G A CELF4 Intron 0.53 TCGA-06-5416-01 18 3814224 3814224 T C DLGAP1 Missense_Mutation p.E336G 0.19 deleterious(0) possibly_damaging(0.606) TCGA-06-5416-01 18 3880062 3880062 C A DLGAP1 Missense_Mutation p.G3W 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 39537587 39537587 G T PIK3C3 Missense_Mutation p.D41Y 0.19 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 18 40850420 40850420 G A SYT4 Silent p.I388I 0.23 TCGA-06-5416-01 18 40851785 40851785 G A SYT4 Missense_Mutation p.R288W 0.43 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 18 40853899 40853899 G A SYT4 Silent p.F165F 0.43 TCGA-06-5416-01 18 42530955 42530955 C A SETBP1 Silent p.T550T 0.18 TCGA-06-5416-01 18 43252946 43252946 C A SLC14A2 Missense_Mutation p.L771M 0.44 tolerated(0.05) probably_damaging(0.988) TCGA-06-5416-01 18 43405697 43405697 G A SIGLEC15 Missense_Mutation p.E2K 0.21 deleterious_low_confidence(0.01) benign(0.142) TCGA-06-5416-01 18 43462322 43462322 T G EPG5 Missense_Mutation p.N1812T 0.23 deleterious(0.02) probably_damaging(0.969) TCGA-06-5416-01 18 43467819 43467819 C A EPG5 Missense_Mutation p.G1669V 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 18 43674991 43674991 C T ATP5A1 Intron 0.45 TCGA-06-5416-01 18 44259990 44259990 C T ST8SIA5 3'UTR 0.32 TCGA-06-5416-01 18 44392329 44392329 C T PIAS2 3'UTR 0.70 TCGA-06-5416-01 18 44554605 44554605 G A TCEB3C Nonsense_Mutation p.R537* 0.10 TCGA-06-5416-01 18 44555253 44555253 G A TCEB3C Missense_Mutation p.P321S 0.03 deleterious(0.01) benign(0.016) TCGA-06-5416-01 18 44555302 44555302 C T TCEB3C Silent p.A304A 0.03 TCGA-06-5416-01 18 44559808 44559808 G A TCEB3B Missense_Mutation p.R610W 0.37 deleterious(0) possibly_damaging(0.556) TCGA-06-5416-01 18 44560048 44560048 G A TCEB3B Missense_Mutation p.R530C 0.22 deleterious(0.03) benign(0.027) TCGA-06-5416-01 18 44561654 44561654 G A TCEB3B 5'UTR 0.50 TCGA-06-5416-01 18 45556153 45556153 C T ZBTB7C Silent p.R446R 0.49 TCGA-06-5416-01 18 46190185 46190185 C T CTIF Silent p.F105F 0.42 TCGA-06-5416-01 18 46238022 46238022 C T CTIF Silent p.I180I 0.43 TCGA-06-5416-01 18 46287928 46287928 C T CTIF Silent p.I415I 0.49 TCGA-06-5416-01 18 46287994 46287994 C T CTIF Silent p.C437C 0.45 TCGA-06-5416-01 18 46956762 46956762 C A DYM Translation_Start_Site p.M1? 0.38 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 18 47095902 47095902 G A LIPG Silent p.T185T 0.19 TCGA-06-5416-01 18 47107821 47107821 C A LIPG Missense_Mutation p.A277D 0.24 deleterious(0) probably_damaging(0.955) TCGA-06-5416-01 18 47108804 47108804 T C LIPG Missense_Mutation p.V370A 0.22 deleterious(0.04) probably_damaging(0.936) TCGA-06-5416-01 18 47109980 47109980 G T LIPG Missense_Mutation p.E404D 0.14 tolerated(0.36) benign(0.168) TCGA-06-5416-01 18 47110080 47110080 C T LIPG Missense_Mutation p.R438C 0.26 tolerated(0.05) possibly_damaging(0.631) TCGA-06-5416-01 18 47405351 47405351 T C MYO5B Silent p.R1080R 0.21 TCGA-06-5416-01 18 47506840 47506840 G A MYO5B Missense_Mutation p.R344C 0.23 deleterious(0.01) probably_damaging(0.982) TCGA-06-5416-01 18 47800120 47800120 G T MBD1 Silent p.T420T 0.62 TCGA-06-5416-01 18 47802053 47802053 A C MBD1 Missense_Mutation p.C237G 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 47803366 47803366 G A MBD1 Silent p.A76A 0.45 TCGA-06-5416-01 18 47809283 47809283 G A CXXC1 Missense_Mutation p.R593C 0.42 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 18 47917650 47917650 G A SKA1 Silent p.T202T 0.20 TCGA-06-5416-01 18 48325705 48325705 G A MRO 3'UTR 0.05 TCGA-06-5416-01 18 48335751 48335751 C A MRO Intron 0.16 TCGA-06-5416-01 18 48443742 48443742 G T ME2 Missense_Mutation p.R165I 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 50734115 50734115 C T DCC Nonsense_Mutation p.R597* 0.19 TCGA-06-5416-01 18 51025796 51025796 C T DCC Missense_Mutation p.R1343C 0.46 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 18 51025865 51025865 C A DCC Missense_Mutation p.L1366I 0.21 tolerated(0.06) benign(0.034) TCGA-06-5416-01 18 51820431 51820431 G A POLI Missense_Mutation p.G606D 0.41 tolerated(0.08) benign(0.132) TCGA-06-5416-01 18 51886947 51886947 C T C18orf54 Missense_Mutation p.A2V 0.43 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 18 51888088 51888088 C T C18orf54 Missense_Mutation p.S120F 0.46 tolerated(0.17) probably_damaging(0.983) TCGA-06-5416-01 18 52605251 52605251 C A CCDC68 Missense_Mutation p.K94N 0.42 tolerated(0.12) benign(0.019) TCGA-06-5416-01 18 53252535 53252535 C T TCF4 Missense_Mutation p.A143T 0.36 tolerated(0.06) benign(0.271) TCGA-06-5416-01 18 5416268 5416268 A C EPB41L3 Missense_Mutation p.L539R 0.18 tolerated(0.4) benign(0.036) TCGA-06-5416-01 18 54353217 54353217 G A WDR7 Missense_Mutation p.G184D 0.20 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 18 54444033 54444033 G A WDR7 Missense_Mutation p.A957T 0.46 tolerated(0.35) benign(0.001) TCGA-06-5416-01 18 55021708 55021708 G T ST8SIA3 Missense_Mutation p.E85D 0.20 benign(0) TCGA-06-5416-01 18 55103931 55103931 G A ONECUT2 Missense_Mutation p.G328D 0.25 tolerated(0.08) possibly_damaging(0.898) TCGA-06-5416-01 18 55217936 55217936 G A FECH 3'UTR 0.45 TCGA-06-5416-01 18 55226418 55226418 C T FECH Missense_Mutation p.E261K 0.21 tolerated(0.32) benign(0.009) TCGA-06-5416-01 18 55273148 55273148 C T NARS Missense_Mutation p.V398I 0.13 tolerated(0.12) benign(0.003) TCGA-06-5416-01 18 55287852 55287852 G A NARS Silent p.S14S 0.21 TCGA-06-5416-01 18 55319897 55319897 A G ATP8B1 Missense_Mutation p.L1027P 0.48 deleterious(0.01) probably_damaging(0.935) TCGA-06-5416-01 18 55359227 55359227 G A ATP8B1 Silent p.I344I 0.38 TCGA-06-5416-01 18 55996356 55996356 C T NEDD4L Silent p.P270P 0.51 TCGA-06-5416-01 18 56009012 56009012 T G NEDD4L Missense_Mutation p.L454V 0.17 tolerated(0.32) possibly_damaging(0.556) TCGA-06-5416-01 18 56202466 56202466 C A ALPK2 Missense_Mutation p.K1651N 0.21 tolerated(0.46) benign(0.093) TCGA-06-5416-01 18 56203444 56203444 C T ALPK2 Nonsense_Mutation p.W1325* 0.20 TCGA-06-5416-01 18 56246899 56246899 C T ALPK2 Missense_Mutation p.C370Y 0.24 deleterious(0.03) possibly_damaging(0.836) TCGA-06-5416-01 18 56246924 56246924 C T ALPK2 Missense_Mutation p.E362K 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 56246925 56246925 G A ALPK2 Silent p.D361D 0.43 TCGA-06-5416-01 18 56414730 56414730 C A MALT1 Missense_Mutation p.L711I 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 56415044 56415044 C A MALT1 Missense_Mutation p.F815L 0.44 tolerated_low_confidence(0.29) benign(0.005) TCGA-06-5416-01 18 56587472 56587472 G T ZNF532 Missense_Mutation p.K651N 0.22 deleterious(0.03) benign(0.188) TCGA-06-5416-01 18 56620907 56620907 C A ZNF532 Missense_Mutation p.S1009Y 0.28 deleterious(0.01) possibly_damaging(0.883) TCGA-06-5416-01 18 58038764 58038764 C T MC4R Silent p.Q273Q 0.23 TCGA-06-5416-01 18 58039285 58039285 C T MC4R Missense_Mutation p.E100K 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 18 5891978 5891978 G A TMEM200C Missense_Mutation p.R29W 0.17 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 18 5892021 5892021 C T TMEM200C Silent p.K14K 0.21 TCGA-06-5416-01 18 5892030 5892030 G A TMEM200C Silent p.S11S 0.24 TCGA-06-5416-01 18 59166500 59166500 G A CDH20 Missense_Mutation p.D110N 0.18 tolerated(0.16) probably_damaging(0.997) TCGA-06-5416-01 18 59195431 59195431 G T CDH20 Missense_Mutation p.D417Y 0.18 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 18 59212263 59212263 A G CDH20 Missense_Mutation p.I512V 0.18 tolerated(0.06) benign(0.164) TCGA-06-5416-01 18 59899569 59899569 C A KIAA1468 Missense_Mutation p.S510Y 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-06-5416-01 18 60609042 60609042 T C PHLPP1 Missense_Mutation p.Y1018H 0.38 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 18 60645679 60645679 G A PHLPP1 Missense_Mutation p.R1390H 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 60985508 60985508 G T BCL2 Missense_Mutation p.A131D 0.48 tolerated(0.25) probably_damaging(0.976) TCGA-06-5416-01 18 61060772 61060772 G T VPS4B Missense_Mutation p.P368H 0.21 deleterious(0) benign(0.306) TCGA-06-5416-01 18 61064380 61064380 G A VPS4B Missense_Mutation p.R327W 0.22 deleterious(0.03) benign(0.339) TCGA-06-5416-01 18 61170948 61170948 C T SERPINB5 Missense_Mutation p.S374F 0.18 deleterious(0.01) probably_damaging(0.965) TCGA-06-5416-01 18 61223421 61223421 A C SERPINB12 Missense_Mutation p.K10T 0.20 deleterious(0.01) benign(0.091) TCGA-06-5416-01 18 61305295 61305295 C T SERPINB4 Silent p.E277E 0.24 TCGA-06-5416-01 18 61328367 61328367 G T SERPINB3 Missense_Mutation p.F28L 0.25 tolerated(0.13) possibly_damaging(0.537) TCGA-06-5416-01 18 61328370 61328370 G T SERPINB3 Silent p.I27I 0.22 TCGA-06-5416-01 18 61377473 61377473 T C SERPINB11 Missense_Mutation p.F16L 0.39 tolerated(0.07) benign(0.073) TCGA-06-5416-01 18 61387255 61387255 G A SERPINB11 Missense_Mutation p.A162T 0.47 tolerated(0.38) benign(0) TCGA-06-5416-01 18 61387330 61387330 C T SERPINB11 Nonsense_Mutation p.Q187* 0.38 TCGA-06-5416-01 18 61460406 61460406 G A SERPINB7 Silent p.Q77Q 0.17 TCGA-06-5416-01 18 61471830 61471830 T C SERPINB7 Silent p.D368D 0.47 TCGA-06-5416-01 18 61471969 61471969 G A SERPINB7 3'UTR 0.46 TCGA-06-5416-01 18 61602289 61602289 T G SERPINB10 Missense_Mutation p.V336G 0.40 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 18 61602447 61602447 C A SERPINB10 Missense_Mutation p.L389I 0.25 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 18 61647126 61647126 G T SERPINB8 Missense_Mutation p.R87I 0.21 deleterious(0.02) probably_damaging(0.954) TCGA-06-5416-01 18 6213189 6213189 G A L3MBTL4 Missense_Mutation p.R314C 0.48 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 18 624935 624935 T C CLUL1 Missense_Mutation p.L109S 0.25 tolerated(0.15) benign(0.166) TCGA-06-5416-01 18 64239269 64239269 G A CDH19 Missense_Mutation p.T58M 0.50 deleterious(0.03) possibly_damaging(0.494) TCGA-06-5416-01 18 65179517 65179517 C T DSEL Missense_Mutation p.G787R 0.45 deleterious(0.01) probably_damaging(0.977) TCGA-06-5416-01 18 65180583 65180583 C A DSEL Silent p.G431G 0.24 TCGA-06-5416-01 18 65181437 65181437 C A DSEL Nonsense_Mutation p.E147* 0.43 TCGA-06-5416-01 18 674332 674332 C A ENOSF1 Missense_Mutation p.K442N 0.04 deleterious(0.03) benign(0.219) TCGA-06-5416-01 18 67614083 67614083 T G CD226 Missense_Mutation p.N90T 0.41 deleterious(0) benign(0.173) TCGA-06-5416-01 18 67816201 67816201 C A RTTN Nonsense_Mutation p.E749* 0.21 TCGA-06-5416-01 18 67860642 67860642 C T RTTN Missense_Mutation p.G297S 0.22 tolerated(0.3) benign(0.217) TCGA-06-5416-01 18 67992287 67992287 G A SOCS6 Missense_Mutation p.R128H 0.22 deleterious_low_confidence(0.04) benign(0.023) TCGA-06-5416-01 18 67993558 67993558 G A SOCS6 3'UTR 0.26 TCGA-06-5416-01 18 6889936 6889936 G T ARHGAP28 Missense_Mutation p.R370L 0.18 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 18 6898536 6898536 T C ARHGAP28 Intron 0.16 TCGA-06-5416-01 18 6958511 6958511 G T LAMA1 Missense_Mutation p.F2643L 0.14 deleterious(0) possibly_damaging(0.558) TCGA-06-5416-01 18 6975962 6975962 G T LAMA1 Missense_Mutation p.L2155I 0.23 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 18 6977821 6977821 G A LAMA1 Missense_Mutation p.R2084W 0.24 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 18 7014025 7014025 G A LAMA1 Missense_Mutation p.S1051L 0.19 deleterious(0) probably_damaging(0.937) TCGA-06-5416-01 18 7023334 7023334 C T LAMA1 Missense_Mutation p.E844K 0.27 deleterious(0.02) benign(0.009) TCGA-06-5416-01 18 70526307 70526307 C T NETO1 Missense_Mutation p.A75T 0.44 tolerated(0.13) benign(0.26) TCGA-06-5416-01 18 71796690 71796690 A G FBXO15 Silent p.C245C 0.38 TCGA-06-5416-01 18 71815927 71815927 C A TIMM21 5'UTR 0.19 TCGA-06-5416-01 18 71816048 71816048 T G TIMM21 Missense_Mutation p.I2S 0.05 deleterious_low_confidence(0) benign(0.025) TCGA-06-5416-01 18 7231917 7231917 G A LRRC30 Missense_Mutation p.A261T 0.06 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 18 72342943 72342943 G A ZNF407 5'Flank 0.28 TCGA-06-5416-01 18 72343489 72343489 G A ZNF407 Missense_Mutation p.E172K 0.40 deleterious(0.05) possibly_damaging(0.752) TCGA-06-5416-01 18 72589169 72589169 T G ZNF407 Missense_Mutation p.L1632V 0.20 tolerated(0.13) possibly_damaging(0.891) TCGA-06-5416-01 18 72632584 72632584 C T ZNF407 Silent p.F1788F 0.18 TCGA-06-5416-01 18 72997589 72997589 C T TSHZ1 Missense_Mutation p.S31L 0.23 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 18 73000493 73000493 G A TSHZ1 Missense_Mutation p.R999Q 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 74091936 74091936 C T ZNF516 Missense_Mutation p.D712N 0.39 tolerated(0.06) possibly_damaging(0.704) TCGA-06-5416-01 18 74561614 74561614 G A ZNF236 Missense_Mutation p.R61Q 0.48 tolerated(0.6) benign(0.023) TCGA-06-5416-01 18 74563737 74563737 C T ZNF236 Nonsense_Mutation p.R67* 0.22 TCGA-06-5416-01 18 74635035 74635035 G A ZNF236 Missense_Mutation p.R1187Q 0.35 deleterious(0.02) possibly_damaging(0.49) TCGA-06-5416-01 18 76755160 76755160 G A SALL3 Missense_Mutation p.A1057T 0.26 tolerated(0.65) benign(0.024) TCGA-06-5416-01 18 77013416 77013416 G A ATP9B Silent p.T381T 0.05 TCGA-06-5416-01 18 77013474 77013474 T G ATP9B Missense_Mutation p.F401V 0.45 deleterious(0.02) possibly_damaging(0.549) TCGA-06-5416-01 18 77089296 77089296 C T ATP9B Silent p.I643I 0.20 TCGA-06-5416-01 18 77107913 77107913 C A ATP9B Silent p.I942I 0.09 TCGA-06-5416-01 18 77132877 77132877 A G ATP9B Missense_Mutation p.Y1022C 0.30 deleterious(0) possibly_damaging(0.795) TCGA-06-5416-01 18 77170656 77170656 C T NFATC1 Silent p.G114G 0.17 TCGA-06-5416-01 18 77211800 77211800 C T NFATC1 Silent p.F616F 0.45 TCGA-06-5416-01 18 77464820 77464820 G A CTDP1 Silent p.L225L 0.47 TCGA-06-5416-01 18 77470400 77470400 A G CTDP1 Missense_Mutation p.E276G 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 18 77475316 77475316 C T CTDP1 Missense_Mutation p.A619V 0.44 tolerated(0.44) benign(0.014) TCGA-06-5416-01 18 77475335 77475335 C T CTDP1 Silent p.I625I 0.29 TCGA-06-5416-01 18 77895369 77895369 G A ADNP2 Silent p.K691K 0.17 TCGA-06-5416-01 18 77895733 77895733 G A ADNP2 Missense_Mutation p.D813N 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 77917882 77917882 G A PARD6G Silent p.V301V 0.50 TCGA-06-5416-01 18 8784605 8784605 G T SOGA2 Nonsense_Mutation p.E499* 0.49 TCGA-06-5416-01 18 8796347 8796347 G A SOGA2 Missense_Mutation p.E710K 0.48 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 18 8828938 8828938 A G SOGA2 Silent p.G1585G 0.17 TCGA-06-5416-01 18 905432 905432 G A ADCYAP1 Silent p.G15G 0.13 TCGA-06-5416-01 18 9254528 9254528 C A ANKRD12 Silent p.V421V 0.46 TCGA-06-5416-01 18 9255009 9255009 C T ANKRD12 Missense_Mutation p.R582W 0.22 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-06-5416-01 18 9257928 9257929 - A ANKRD12 Frame_Shift_Ins p.T1557Nfs*10 0.32 TCGA-06-5416-01 18 9399433 9399433 C T TWSG1 Missense_Mutation p.R194C 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 18 9517031 9517031 A C RALBP1 Missense_Mutation p.K145Q 0.23 deleterious(0.01) possibly_damaging(0.609) TCGA-06-5416-01 18 9583171 9583171 G A PPP4R1 Nonsense_Mutation p.R288* 0.13 TCGA-06-5416-01 18 9859397 9859397 C T RAB31 3'UTR 0.48 TCGA-06-5416-01 18 9887226 9887226 G A TXNDC2 Silent p.K250K 0.20 TCGA-06-5416-01 18 9887718 9887718 C T TXNDC2 Silent p.P414P 0.32 TCGA-06-5416-01 18 9887808 9887808 C T TXNDC2 Silent p.F444F 0.46 TCGA-06-5416-01 18 9914177 9914177 C T VAPA 5'UTR 0.19 TCGA-06-5416-01 19 10079118 10079118 C A COL5A3 Missense_Mutation p.E1419D 0.17 unknown(0) TCGA-06-5416-01 19 10084894 10084894 G A COL5A3 Missense_Mutation p.P1153S 0.38 probably_damaging(0.999) TCGA-06-5416-01 19 10114787 10114787 G T COL5A3 Missense_Mutation p.P210H 0.33 unknown(0) TCGA-06-5416-01 19 10257034 10257034 T C DNMT1 Missense_Mutation p.T963A 0.38 tolerated(0.23) benign(0.002) TCGA-06-5416-01 19 10262178 10262178 C T DNMT1 Missense_Mutation p.V721I 0.16 tolerated(0.25) benign(0.022) TCGA-06-5416-01 19 10265584 10265584 G A DNMT1 Silent p.I547I 0.16 TCGA-06-5416-01 19 10291486 10291486 C A DNMT1 Nonsense_Mutation p.E65* 0.15 TCGA-06-5416-01 19 1036425 1036425 A G CNN2 Missense_Mutation p.N173S 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 10398832 10398832 C T ICAM4 Missense_Mutation p.S264F 0.32 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 19 10405144 10405144 C T ICAM5 Silent p.S686S 0.20 TCGA-06-5416-01 19 10428239 10428239 A C RAVER1 Missense_Mutation p.L721R 0.16 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 10446345 10446345 A G ICAM3 Splice_Site p.X217_splice 0.56 TCGA-06-5416-01 19 1048895 1048895 C T ABCA7 Silent p.G757G 0.54 TCGA-06-5416-01 19 10502238 10502238 C T CDC37 Missense_Mutation p.V376I 0.56 deleterious_low_confidence(0.05) benign(0.001) TCGA-06-5416-01 19 10514074 10514074 G T CDC37 Missense_Mutation p.L28I 0.14 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 1053474 1053474 C T ABCA7 Missense_Mutation p.R1123W 0.52 deleterious(0) possibly_damaging(0.776) TCGA-06-5416-01 19 1056180 1056180 G A ABCA7 Missense_Mutation p.D1452N 0.08 tolerated(0.07) possibly_damaging(0.71) TCGA-06-5416-01 19 10578042 10578042 C T PDE4A Silent p.F802F 0.53 TCGA-06-5416-01 19 10668341 10668341 C T KRI1 Missense_Mutation p.E508K 0.16 deleterious(0.04) benign(0.227) TCGA-06-5416-01 19 10672385 10672385 G A KRI1 Missense_Mutation p.S155L 0.37 tolerated(0.19) benign(0.002) TCGA-06-5416-01 19 10690435 10690435 G T AP1M2 Missense_Mutation p.P258H 0.14 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 10694733 10694733 C T AP1M2 Missense_Mutation p.R19H 0.42 deleterious(0) benign(0.258) TCGA-06-5416-01 19 10781744 10781744 A C ILF3 Missense_Mutation p.N33T 0.49 tolerated(0.33) possibly_damaging(0.9) TCGA-06-5416-01 19 10790562 10790562 G A ILF3 Missense_Mutation p.R273Q 0.49 deleterious(0.03) possibly_damaging(0.712) TCGA-06-5416-01 19 10800340 10800340 G A ILF3 3'UTR 0.23 TCGA-06-5416-01 19 1080542 1080542 C T HMHA1 Silent p.G652G 0.18 TCGA-06-5416-01 19 10823481 10823481 G T QTRT1 Missense_Mutation p.K303N 0.17 tolerated(0.88) benign(0.008) TCGA-06-5416-01 19 1086070 1086070 C T HMHA1 3'UTR 0.19 TCGA-06-5416-01 19 10883264 10883264 C A DNM2 Silent p.I115I 0.17 TCGA-06-5416-01 19 10928127 10928127 A G DNM2 Intron 0.36 TCGA-06-5416-01 19 10941703 10941703 G A DNM2 Missense_Mutation p.E865K 0.41 deleterious_low_confidence(0.01) unknown(0) TCGA-06-5416-01 19 10946024 10946024 G A TMED1 Silent p.I63I 0.16 TCGA-06-5416-01 19 11015663 11015663 G A CARM1 Missense_Mutation p.R86Q 0.16 deleterious(0.05) benign(0.037) TCGA-06-5416-01 19 11024627 11024627 C A CARM1 Silent p.P248P 0.14 TCGA-06-5416-01 19 1106599 1106599 C T GPX4 3'UTR 0.22 TCGA-06-5416-01 19 110740 110740 T G OR4F17 Missense_Mutation p.F21C 0.09 deleterious(0.01) possibly_damaging(0.621) TCGA-06-5416-01 19 11099999 11099999 G T SMARCA4 Missense_Mutation p.Q375H 0.34 possibly_damaging(0.832) TCGA-06-5416-01 19 11134277 11134277 G T SMARCA4 Missense_Mutation p.K981N 0.18 probably_damaging(0.988) TCGA-06-5416-01 19 11135027 11135027 C T SMARCA4 Silent p.C998C 0.19 TCGA-06-5416-01 19 11141441 11141441 A G SMARCA4 Missense_Mutation p.K1140E 0.09 benign(0.431) TCGA-06-5416-01 19 11141552 11141552 G A SMARCA4 Missense_Mutation p.D1177N 0.12 probably_damaging(0.982) TCGA-06-5416-01 19 1116026 1116026 G A SBNO2 Missense_Mutation p.R627W 0.18 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 19 11169474 11169474 G A SMARCA4 Missense_Mutation p.R1515H 0.16 probably_damaging(0.998) TCGA-06-5416-01 19 11257952 11257952 G A SPC24 Silent p.P167P 0.67 TCGA-06-5416-01 19 11280466 11280466 G T KANK2 Intron 0.25 TCGA-06-5416-01 19 11280556 11280556 G A KANK2 Silent p.C841C 0.43 TCGA-06-5416-01 19 11304597 11304597 G A KANK2 Silent p.I53I 0.23 TCGA-06-5416-01 19 11311403 11311403 G A DOCK6 Silent p.D1976D 0.34 TCGA-06-5416-01 19 11319453 11319453 G A DOCK6 Missense_Mutation p.S1666L 0.35 deleterious(0) possibly_damaging(0.877) TCGA-06-5416-01 19 11324955 11324955 G A DOCK6 Missense_Mutation p.S1445F 0.38 tolerated(0.51) benign(0.008) TCGA-06-5416-01 19 11333445 11333445 G A DOCK6 Missense_Mutation p.S1069L 0.27 tolerated(0.06) probably_damaging(0.975) TCGA-06-5416-01 19 11339660 11339660 G A DOCK6 Missense_Mutation p.R924C 0.23 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 19 11350469 11350469 G A C19orf80 Silent p.V52V 0.14 TCGA-06-5416-01 19 11465554 11465554 G A CCDC159 3'UTR 0.31 TCGA-06-5416-01 19 11505124 11505124 C T RGL3 Missense_Mutation p.R702Q 0.20 deleterious(0.01) unknown(0) TCGA-06-5416-01 19 11537558 11537558 G A CCDC151 Missense_Mutation p.A220V 0.22 tolerated(0.25) benign(0.077) TCGA-06-5416-01 19 11560237 11560237 C T PRKCSH 3'UTR 0.28 TCGA-06-5416-01 19 11565602 11565602 G A ELAVL3 Silent p.G281G 0.32 TCGA-06-5416-01 19 11568915 11568915 C T ELAVL3 Missense_Mutation p.R225H 0.52 deleterious(0.02) possibly_damaging(0.876) TCGA-06-5416-01 19 11618810 11618810 G A ECSIT Silent p.I264I 0.43 TCGA-06-5416-01 19 11685838 11685838 C T ACP5 Missense_Mutation p.R322Q 0.18 deleterious(0.02) benign(0.028) TCGA-06-5416-01 19 11687397 11687397 G A ACP5 Silent p.F132F 0.12 TCGA-06-5416-01 19 11687916 11687916 A C ACP5 Missense_Mutation p.F73V 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 11728587 11728587 A T ZNF627 Missense_Mutation p.Q423H 0.17 deleterious(0.03) possibly_damaging(0.77) TCGA-06-5416-01 19 11728787 11728787 C T ZNF627 3'UTR 0.58 TCGA-06-5416-01 19 11796706 11796706 G T ZNF833P RNA 0.57 TCGA-06-5416-01 19 11832822 11832822 A G ZNF823 Silent p.S509S 0.43 TCGA-06-5416-01 19 11833609 11833609 G A ZNF823 Missense_Mutation p.A247V 0.18 deleterious(0) benign(0.244) TCGA-06-5416-01 19 11849656 11849656 G A ZNF823 5'UTR 0.19 TCGA-06-5416-01 19 11892124 11892124 A C ZNF441 Silent p.I495I 0.15 TCGA-06-5416-01 19 11892251 11892251 A T ZNF441 Nonsense_Mutation p.K538* 0.19 TCGA-06-5416-01 19 11917346 11917346 G A ZNF491 Missense_Mutation p.G193E 0.18 deleterious(0.03) probably_damaging(0.939) TCGA-06-5416-01 19 11944002 11944002 C A ZNF440 3'UTR 0.15 TCGA-06-5416-01 19 11944267 11944267 T G ZNF440 3'UTR 0.55 TCGA-06-5416-01 19 11944594 11944594 C T ZNF440 3'UTR 0.16 TCGA-06-5416-01 19 11976905 11976905 G T ZNF439 5'UTR 0.13 TCGA-06-5416-01 19 11979077 11979077 G A ZNF439 Missense_Mutation p.R398Q 0.08 tolerated(0.64) benign(0.048) TCGA-06-5416-01 19 11979195 11979195 G A ZNF439 Silent p.P437P 0.44 TCGA-06-5416-01 19 11979414 11979414 C A ZNF439 3'UTR 0.36 TCGA-06-5416-01 19 11980045 11980045 G A ZNF439 3'UTR 0.38 TCGA-06-5416-01 19 12014489 12014489 A C ZNF69 Missense_Mutation p.E41D 0.31 deleterious(0.01) possibly_damaging(0.842) TCGA-06-5416-01 19 12059468 12059468 G A ZNF700 Missense_Mutation p.R210Q 0.34 tolerated(1) benign(0.019) TCGA-06-5416-01 19 12059904 12059904 G T ZNF700 Missense_Mutation p.M355I 0.15 tolerated(0.69) benign(0.338) TCGA-06-5416-01 19 12060056 12060056 G A ZNF700 Missense_Mutation p.R406Q 0.34 tolerated(0.8) benign(0.253) TCGA-06-5416-01 19 12061473 12061473 C A ZNF700 3'UTR 0.54 TCGA-06-5416-01 19 12087927 12087927 G A ZNF763 Silent p.R29R 0.35 TCGA-06-5416-01 19 12089786 12089786 C T ZNF763 Silent p.F352F 0.21 TCGA-06-5416-01 19 12090634 12090634 C A ZNF763 3'UTR 0.17 TCGA-06-5416-01 19 12090649 12090649 G T ZNF763 3'UTR 0.16 TCGA-06-5416-01 19 12090657 12090657 G A ZNF763 3'UTR 0.49 TCGA-06-5416-01 19 12090747 12090747 C T ZNF763 3'UTR 0.16 TCGA-06-5416-01 19 12125884 12125884 C T ZNF433 Missense_Mutation p.G600R 0.17 tolerated(0.49) benign(0.025) TCGA-06-5416-01 19 12154666 12154666 C A ZNF878 Missense_Mutation p.R517I 0.28 tolerated(0.35) benign(0.008) TCGA-06-5416-01 19 12154972 12154972 C T ZNF878 Missense_Mutation p.R415Q 0.36 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 19 12155886 12155886 G A ZNF878 Silent p.I110I 0.61 TCGA-06-5416-01 19 12187357 12187357 C T ZNF844 Silent p.N474N 0.16 TCGA-06-5416-01 19 12187702 12187702 G T ZNF844 Missense_Mutation p.K589N 0.62 deleterious_low_confidence(0.04) benign(0.403) TCGA-06-5416-01 19 12188554 12188554 G T ZNF844 3'UTR 0.67 TCGA-06-5416-01 19 12222912 12222912 C T ZNF788 Nonsense_Mutation p.R184* 0.36 TCGA-06-5416-01 19 12223062 12223062 C T ZNF788 Missense_Mutation p.R234C 0.24 tolerated(0.17) benign(0.298) TCGA-06-5416-01 19 12243962 12243962 C T ZNF20 Missense_Mutation p.A347T 0.17 tolerated(0.16) possibly_damaging(0.629) TCGA-06-5416-01 19 12256275 12256275 C T ZNF625 Missense_Mutation p.R319Q 0.37 tolerated(0.86) benign(0.002) TCGA-06-5416-01 19 12297911 12297911 C T ZNF136 Nonsense_Mutation p.R240* 0.19 TCGA-06-5416-01 19 12298667 12298667 C T ZNF136 Nonsense_Mutation p.R492* 0.60 TCGA-06-5416-01 19 12383592 12383592 C T ZNF44 Missense_Mutation p.R541H 0.21 tolerated(0.13) benign(0.004) TCGA-06-5416-01 19 12383841 12383841 C A ZNF44 Missense_Mutation p.R458I 0.23 tolerated(0.67) probably_damaging(0.94) TCGA-06-5416-01 19 12460708 12460708 C A ZNF442 Missense_Mutation p.R564I 0.40 tolerated(0.06) possibly_damaging(0.859) TCGA-06-5416-01 19 12461964 12461964 A G ZNF442 Silent p.C145C 0.14 TCGA-06-5416-01 19 12502309 12502309 T C ZNF799 Silent p.T301T 0.18 TCGA-06-5416-01 19 12504169 12504169 A G ZNF799 Silent p.C24C 0.17 TCGA-06-5416-01 19 1257394 1257394 C A MIDN 3'UTR 0.42 TCGA-06-5416-01 19 12575345 12575345 C T ZNF709 Missense_Mutation p.R464Q 0.16 tolerated(0.9) probably_damaging(0.995) TCGA-06-5416-01 19 12638277 12638277 A G ZNF564 Silent p.H215H 0.51 TCGA-06-5416-01 19 12721562 12721562 C A ZNF490 5'UTR 0.60 TCGA-06-5416-01 19 12807113 12807113 C T FBXW9 Missense_Mutation p.D95N 0.50 tolerated(0.1) possibly_damaging(0.818) TCGA-06-5416-01 19 12858924 12858924 C T ASNA1 3'UTR 0.77 TCGA-06-5416-01 19 12858927 12858927 C T ASNA1 3'UTR 0.26 TCGA-06-5416-01 19 12865539 12865539 C T BEST2 Missense_Mutation p.R141C 0.29 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 19 12878718 12878718 C T HOOK2 Splice_Site p.X406_splice 0.14 TCGA-06-5416-01 19 12911042 12911042 C A PRDX2 Missense_Mutation p.R110L 0.31 deleterious(0.04) benign(0) TCGA-06-5416-01 19 12924237 12924237 G A RNASEH2A Missense_Mutation p.R286Q 0.59 tolerated(0.21) benign(0.03) TCGA-06-5416-01 19 12939509 12939509 G A RTBDN Silent p.R141R 0.30 TCGA-06-5416-01 19 12976829 12976829 C T MAST1 Nonsense_Mutation p.R648* 0.38 TCGA-06-5416-01 19 12984445 12984445 C A MAST1 Silent p.S1158S 0.33 TCGA-06-5416-01 19 12989488 12989488 C A DNASE2 Missense_Mutation p.K169N 0.64 tolerated(0.43) benign(0.012) TCGA-06-5416-01 19 12995769 12995769 C T KLF1 Missense_Mutation p.R340H 0.16 deleterious(0.03) probably_damaging(0.997) TCGA-06-5416-01 19 13010848 13010848 G A SYCE2 Silent p.F194F 0.33 TCGA-06-5416-01 19 13035457 13035457 C T FARSA Silent p.K397K 0.22 TCGA-06-5416-01 19 13035494 13035494 C A FARSA Missense_Mutation p.G385V 0.61 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 19 13060138 13060138 C T RAD23A Silent p.N243N 0.56 TCGA-06-5416-01 19 13063818 13063818 C A RAD23A Missense_Mutation p.N349K 0.14 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 19 13084239 13084239 C T DAND5 Nonsense_Mutation p.R121* 0.17 TCGA-06-5416-01 19 13335498 13335498 T C CACNA1A Missense_Mutation p.D1905G 0.42 benign(0) TCGA-06-5416-01 19 1357048 1357048 G T MUM1 Missense_Mutation p.R34I 0.46 deleterious(0.02) benign(0.104) TCGA-06-5416-01 19 1390912 1390912 G A NDUFS7 Missense_Mutation p.V91M 0.14 deleterious_low_confidence(0.01) probably_damaging(0.997) TCGA-06-5416-01 19 13993441 13993441 C T C19orf57 3'UTR 0.21 TCGA-06-5416-01 19 1399900 1399900 G A GAMT Silent p.I73I 0.65 TCGA-06-5416-01 19 14000680 14000680 C T C19orf57 Missense_Mutation p.G330E 0.56 tolerated(0.51) benign(0.001) TCGA-06-5416-01 19 14067188 14067188 G A DCAF15 Missense_Mutation p.R213Q 0.17 tolerated(0.47) benign(0.004) TCGA-06-5416-01 19 14157023 14157023 G A IL27RA Missense_Mutation p.E276K 0.41 tolerated(0.57) benign(0.004) TCGA-06-5416-01 19 14157095 14157095 G A IL27RA Missense_Mutation p.A300T 0.52 tolerated(0.13) benign(0.116) TCGA-06-5416-01 19 14203894 14203894 A C PRKACA 3'UTR 0.11 TCGA-06-5416-01 19 1421251 1421251 C T DAZAP1 Silent p.F136F 0.15 TCGA-06-5416-01 19 14521913 14521913 G A DDX39A Silent p.V167V 0.51 TCGA-06-5416-01 19 14561198 14561198 G A PKN1 Missense_Mutation p.A233T 0.27 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 19 14578766 14578766 G A PKN1 Missense_Mutation p.D661N 0.21 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 19 14591175 14591175 C A GIPC1 Missense_Mutation p.K199N 0.15 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 14593626 14593626 G A GIPC1 Missense_Mutation p.R55W 0.39 deleterious(0) possibly_damaging(0.513) TCGA-06-5416-01 19 1462163 1462163 C T APC2 Missense_Mutation p.R614C 0.10 probably_damaging(0.977) TCGA-06-5416-01 19 14627452 14627452 G A DNAJB1 Silent p.I206I 0.56 TCGA-06-5416-01 19 14627715 14627715 G A DNAJB1 Missense_Mutation p.R119W 0.58 deleterious(0.02) possibly_damaging(0.586) TCGA-06-5416-01 19 1466232 1466232 C A APC2 Missense_Mutation p.P978T 0.62 benign(0.055) TCGA-06-5416-01 19 14674001 14674001 G A TECR Intron 0.59 TCGA-06-5416-01 19 14677001 14677001 C T NDUFB7 Missense_Mutation p.A120T 0.22 tolerated(0.09) benign(0.205) TCGA-06-5416-01 19 14703130 14703130 G T CLEC17A Missense_Mutation p.E79D 0.29 tolerated(0.09) probably_damaging(0.952) TCGA-06-5416-01 19 14705483 14705483 G A CLEC17A Missense_Mutation p.R117Q 0.64 tolerated(0.61) benign(0.002) TCGA-06-5416-01 19 14740872 14740872 G T EMR3 Silent p.V597V 0.52 TCGA-06-5416-01 19 14829490 14829490 G A ZNF333 Missense_Mutation p.E451K 0.18 tolerated(0.1) possibly_damaging(0.635) TCGA-06-5416-01 19 14865859 14865859 G A EMR2 Silent p.G499G 0.38 TCGA-06-5416-01 19 14866597 14866597 G T EMR2 Missense_Mutation p.L429M 0.21 deleterious(0.01) possibly_damaging(0.779) TCGA-06-5416-01 19 14910580 14910580 G A OR7C1 Silent p.F123F 0.55 TCGA-06-5416-01 19 14938889 14938889 G A OR7A5 Silent p.L55L 0.15 TCGA-06-5416-01 19 14951778 14951778 G T OR7A10 Missense_Mutation p.F304L 0.17 tolerated_low_confidence(0.72) benign(0.003) TCGA-06-5416-01 19 1495361 1495361 G A REEP6 Missense_Mutation p.G62R 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 14992074 14992074 G T OR7A17 Missense_Mutation p.L32M 0.23 deleterious_low_confidence(0) probably_damaging(0.933) TCGA-06-5416-01 19 1506266 1506266 G T ADAMTSL5 Silent p.R388R 0.37 TCGA-06-5416-01 19 15079239 15079239 C T SLC1A6 Missense_Mutation p.A142T 0.31 deleterious(0) benign(0.257) TCGA-06-5416-01 19 15132170 15132170 G A CCDC105 Missense_Mutation p.A294T 0.15 tolerated(0.06) possibly_damaging(0.71) TCGA-06-5416-01 19 15198596 15198596 C A OR1I1 Silent p.T240T 0.31 TCGA-06-5416-01 19 15224520 15224520 G A SYDE1 Missense_Mutation p.A652T 0.35 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 15224714 15224714 C T SYDE1 Silent p.F716F 0.36 TCGA-06-5416-01 19 15276765 15276765 G A NOTCH3 Missense_Mutation p.R1834W 0.15 deleterious(0) possibly_damaging(0.863) TCGA-06-5416-01 19 15291050 15291050 G T NOTCH3 Missense_Mutation p.L1054M 0.34 deleterious(0) probably_damaging(0.948) TCGA-06-5416-01 19 15291828 15291828 C T NOTCH3 Missense_Mutation p.A980T 0.18 tolerated(0.2) benign(0.003) TCGA-06-5416-01 19 15302665 15302665 C A NOTCH3 Missense_Mutation p.Q231H 0.55 tolerated(0.14) benign(0.002) TCGA-06-5416-01 19 15349733 15349733 G A BRD4 Missense_Mutation p.R1281W 0.53 possibly_damaging(0.689) TCGA-06-5416-01 19 15353728 15353728 G A BRD4 Missense_Mutation p.S1051L 0.15 benign(0.177) TCGA-06-5416-01 19 15367976 15367976 G A BRD4 Silent p.F450F 0.17 TCGA-06-5416-01 19 15374250 15374250 G A BRD4 Missense_Mutation p.A441V 0.19 possibly_damaging(0.787) TCGA-06-5416-01 19 15379767 15379767 T G BRD4 Missense_Mutation p.E124D 0.46 unknown(0) TCGA-06-5416-01 19 15484067 15484067 G A AKAP8 Silent p.Y152Y 0.40 TCGA-06-5416-01 19 15484130 15484130 G A AKAP8 Silent p.F131F 0.23 TCGA-06-5416-01 19 15536436 15536436 C T WIZ Missense_Mutation p.D409N 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 15538097 15538097 G A WIZ Silent p.G259G 0.42 TCGA-06-5416-01 19 15562876 15562876 C A RASAL3 Missense_Mutation p.G958W 0.33 deleterious(0.01) possibly_damaging(0.844) TCGA-06-5416-01 19 15590239 15590239 C T PGLYRP2 5'UTR 0.18 TCGA-06-5416-01 19 15651283 15651283 G T CYP4F22 Missense_Mutation p.A232S 0.12 tolerated(0.05) benign(0.163) TCGA-06-5416-01 19 15654961 15654961 G A CYP4F22 Missense_Mutation p.G336D 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 15658923 15658923 G A CYP4F22 Missense_Mutation p.D381N 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 15730527 15730527 G A CYP4F8 RNA 0.14 TCGA-06-5416-01 19 15752271 15752271 G A CYP4F3 Missense_Mutation p.A16T 0.41 tolerated(0.09) benign(0.011) TCGA-06-5416-01 19 15754803 15754803 C A CYP4F3 Intron 0.22 TCGA-06-5416-01 19 15760899 15760899 G A CYP4F3 Missense_Mutation p.R275H 0.16 deleterious(0.02) benign(0.159) TCGA-06-5416-01 19 15770088 15770088 C T CYP4F3 Silent p.L486L 0.40 TCGA-06-5416-01 19 15770206 15770206 G T CYP4F3 3'UTR 0.16 TCGA-06-5416-01 19 15791299 15791299 G A CYP4F12 Silent p.T165T 0.48 TCGA-06-5416-01 19 15793294 15793294 C A CYP4F12 Silent p.I207I 0.16 TCGA-06-5416-01 19 15795956 15795956 G A CYP4F12 Missense_Mutation p.R355Q 0.15 deleterious(0.02) possibly_damaging(0.879) TCGA-06-5416-01 19 15839646 15839646 G T OR10H2 Missense_Mutation p.G265C 0.56 deleterious(0) benign(0.049) TCGA-06-5416-01 19 15852383 15852383 T C OR10H3 Missense_Mutation p.Y61H 0.17 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 19 15905629 15905629 C T OR10H5 Silent p.S257S 0.14 TCGA-06-5416-01 19 15918164 15918164 C A OR10H1 Missense_Mutation p.K228N 0.43 deleterious(0) benign(0.046) TCGA-06-5416-01 19 16032970 16032970 T C CYP4F11 Missense_Mutation p.D331G 0.12 deleterious(0.01) possibly_damaging(0.558) TCGA-06-5416-01 19 16034838 16034838 C A CYP4F11 Missense_Mutation p.K234N 0.19 tolerated(0.07) benign(0.183) TCGA-06-5416-01 19 16045048 16045048 C T CYP4F11 Silent p.Q57Q 0.21 TCGA-06-5416-01 19 16178487 16178487 C T TPM4 Missense_Mutation p.A18V 0.51 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 16268238 16268238 C T HSH2D 3'Flank 0.14 TCGA-06-5416-01 19 16275713 16275713 C T CIB3 Missense_Mutation p.D120N 0.14 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 16437764 16437764 G A KLF2 Silent p.R330R 0.16 TCGA-06-5416-01 19 16545365 16545365 C T EPS15L1 Intron 0.36 TCGA-06-5416-01 19 16553014 16553014 G A EPS15L1 Missense_Mutation p.S17L 0.06 deleterious(0) benign(0.056) TCGA-06-5416-01 19 16589949 16589949 T G CALR3 Missense_Mutation p.E383A 0.54 tolerated_low_confidence(0.05) possibly_damaging(0.697) TCGA-06-5416-01 19 16606600 16606600 G A CALR3 Missense_Mutation p.S52L 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 16631699 16631699 G T CHERP Silent p.L713L 0.55 TCGA-06-5416-01 19 16689212 16689212 G A CTC-429P9.4 Missense_Mutation p.H42Y 0.15 tolerated_low_confidence(0.09) unknown(0) TCGA-06-5416-01 19 16758004 16758004 G T SMIM7 3'UTR 0.31 TCGA-06-5416-01 19 16859990 16859990 G T NWD1 Missense_Mutation p.E179D 0.49 tolerated(0.66) benign(0.02) TCGA-06-5416-01 19 16860484 16860484 G A NWD1 Missense_Mutation p.G344D 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 16860594 16860594 G T NWD1 Missense_Mutation p.D381Y 0.36 deleterious(0.01) probably_damaging(0.919) TCGA-06-5416-01 19 16860749 16860749 C T NWD1 Silent p.L432L 0.22 TCGA-06-5416-01 19 16870113 16870113 G T NWD1 Missense_Mutation p.W616L 0.22 deleterious(0.03) possibly_damaging(0.805) TCGA-06-5416-01 19 16899893 16899893 G T NWD1 Missense_Mutation p.E944D 0.37 deleterious(0.02) benign(0.211) TCGA-06-5416-01 19 16902341 16902341 T C NWD1 Missense_Mutation p.S1041P 0.22 tolerated(0.08) benign(0.017) TCGA-06-5416-01 19 16902429 16902429 C A NWD1 Missense_Mutation p.S1070Y 0.11 tolerated(0.64) benign(0.037) TCGA-06-5416-01 19 16918925 16918925 G A NWD1 Nonsense_Mutation p.W1422* 0.34 TCGA-06-5416-01 19 16973351 16973351 G T SIN3B Missense_Mutation p.R416M 0.17 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 19 16973761 16973761 A G SIN3B Missense_Mutation p.T445A 0.17 tolerated_low_confidence(0.76) benign(0) TCGA-06-5416-01 19 16980666 16980666 G T SIN3B Missense_Mutation p.K766N 0.17 tolerated(0.23) benign(0.003) TCGA-06-5416-01 19 16988397 16988397 C T SIN3B Silent p.G999G 0.31 TCGA-06-5416-01 19 17014593 17014593 G A CPAMD8 Silent p.V1489V 0.15 TCGA-06-5416-01 19 17036028 17036028 C A CPAMD8 Missense_Mutation p.E1222D 0.15 tolerated(0.08) possibly_damaging(0.72) TCGA-06-5416-01 19 17122521 17122521 C T CPAMD8 Missense_Mutation p.R152H 0.32 tolerated(0.35) benign(0.005) TCGA-06-5416-01 19 17213232 17213232 C T MYO9B Silent p.I235I 0.48 TCGA-06-5416-01 19 17298826 17298826 C T MYO9B Missense_Mutation p.S887L 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 17306196 17306196 C T MYO9B Silent p.A1320A 0.23 TCGA-06-5416-01 19 17322576 17322576 C A MYO9B Silent p.A2017A 0.17 TCGA-06-5416-01 19 17343201 17343201 G A NR2F6 Missense_Mutation p.S392L 0.30 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 19 17343343 17343343 A G NR2F6 Missense_Mutation p.S345P 0.18 deleterious(0.04) possibly_damaging(0.878) TCGA-06-5416-01 19 17366233 17366233 G A USHBP1 Silent p.S551S 0.60 TCGA-06-5416-01 19 17384943 17384943 G A BABAM1 Missense_Mutation p.E165K 0.19 tolerated(0.11) possibly_damaging(0.712) TCGA-06-5416-01 19 17397261 17397261 G A ANKLE1 Missense_Mutation p.R583H 0.42 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 19 17441933 17441933 G A ANO8 Silent p.F265F 0.51 TCGA-06-5416-01 19 17443980 17443980 C T ANO8 Missense_Mutation p.R140H 0.28 deleterious(0.01) benign(0.259) TCGA-06-5416-01 19 17449428 17449428 G A GTPBP3 Missense_Mutation p.E157K 0.20 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 19 17476155 17476155 C A PLVAP Missense_Mutation p.E373D 0.13 tolerated(0.11) possibly_damaging(0.885) TCGA-06-5416-01 19 17476463 17476463 C A PLVAP Missense_Mutation p.A271S 0.14 tolerated(0.94) benign(0.011) TCGA-06-5416-01 19 17514964 17514964 G A BST2 Silent p.D129D 0.39 TCGA-06-5416-01 19 17516127 17516127 G T BST2 Silent p.A86A 0.14 TCGA-06-5416-01 19 17571624 17571624 C T NXNL1 Missense_Mutation p.E19K 0.30 tolerated(0.21) benign(0.122) TCGA-06-5416-01 19 17597372 17597372 C T SLC27A1 Silent p.F56F 0.57 TCGA-06-5416-01 19 17611355 17611355 G A SLC27A1 Missense_Mutation p.R462H 0.32 tolerated(0.15) possibly_damaging(0.515) TCGA-06-5416-01 19 17631754 17631754 G A PGLS Missense_Mutation p.R214H 0.35 deleterious(0.04) benign(0.333) TCGA-06-5416-01 19 17671206 17671206 G A COLGALT1 Missense_Mutation p.E141K 0.10 tolerated(0.26) benign(0.108) TCGA-06-5416-01 19 17720834 17720834 G A UNC13A Missense_Mutation p.P1576S 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 17729263 17729263 G A UNC13A Silent p.C1459C 0.12 TCGA-06-5416-01 19 17737587 17737587 G A UNC13A Missense_Mutation p.P1310S 0.21 tolerated(0.14) benign(0.293) TCGA-06-5416-01 19 17768953 17768953 G A UNC13A Missense_Mutation p.R229C 0.45 deleterious_low_confidence(0.01) benign(0.446) TCGA-06-5416-01 19 17779000 17779000 C A UNC13A Splice_Site p.X132_splice 0.45 TCGA-06-5416-01 19 17780454 17780454 G T UNC13A Missense_Mutation p.S101Y 0.52 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-06-5416-01 19 17892585 17892585 C T FCHO1 Silent p.A631A 0.13 TCGA-06-5416-01 19 17893830 17893830 C A FCHO1 Missense_Mutation p.L648M 0.15 tolerated(0.12) benign(0.104) TCGA-06-5416-01 19 1790802 1790802 C T ATP8B3 Missense_Mutation p.E778K 0.50 tolerated(0.86) benign(0.004) TCGA-06-5416-01 19 1791821 1791821 C T ATP8B3 Missense_Mutation p.G744S 0.11 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 19 17918799 17918799 C T B3GNT3 Silent p.C61C 0.39 TCGA-06-5416-01 19 18047303 18047303 C T CCDC124 Missense_Mutation p.A25V 0.19 tolerated(0.37) benign(0.029) TCGA-06-5416-01 19 18084899 18084899 G A KCNN1 Missense_Mutation p.D68N 0.40 tolerated(0.43) benign(0.049) TCGA-06-5416-01 19 18084991 18084991 G A KCNN1 Silent p.A98A 0.14 TCGA-06-5416-01 19 18092572 18092572 C T KCNN1 Missense_Mutation p.R185C 0.25 deleterious(0) probably_damaging(0.953) TCGA-06-5416-01 19 18119362 18119362 C T ARRDC2 Silent p.V81V 0.25 TCGA-06-5416-01 19 18179318 18179318 C T IL12RB1 Missense_Mutation p.R403Q 0.16 tolerated(0.47) benign(0.003) TCGA-06-5416-01 19 18188453 18188453 G A IL12RB1 Missense_Mutation p.P141L 0.43 deleterious(0) probably_damaging(0.937) TCGA-06-5416-01 19 18234051 18234051 C A MAST3 Missense_Mutation p.L113I 0.17 deleterious(0) possibly_damaging(0.874) TCGA-06-5416-01 19 18255984 18255984 C T MAST3 Missense_Mutation p.A966V 0.12 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 18274181 18274181 T C PIK3R2 Missense_Mutation p.Y467H 0.29 deleterious(0.04) possibly_damaging(0.888) TCGA-06-5416-01 19 18279325 18279325 G A PIK3R2 Missense_Mutation p.E593K 0.67 tolerated(0.07) benign(0.023) TCGA-06-5416-01 19 1828492 1828492 C T REXO1 Missense_Mutation p.R99H 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 18322664 18322664 C A PDE4C Missense_Mutation p.A566S 0.21 tolerated(0.24) possibly_damaging(0.893) TCGA-06-5416-01 19 18391329 18391329 C T JUND Silent p.A322A 0.26 TCGA-06-5416-01 19 18474210 18474210 C T PGPEP1 Silent p.C149C 0.10 TCGA-06-5416-01 19 18507819 18507819 G A LRRC25 5'UTR 0.17 TCGA-06-5416-01 19 18632788 18632788 G A ELL Silent p.F26F 0.30 TCGA-06-5416-01 19 18652688 18652688 C A FKBP8 Missense_Mutation p.E31D 0.66 tolerated_low_confidence(0.1) possibly_damaging(0.801) TCGA-06-5416-01 19 18703079 18703079 C T C19orf60 3'UTR 0.15 TCGA-06-5416-01 19 18707561 18707561 C T CRLF1 Missense_Mutation p.A299T 0.11 deleterious(0.03) probably_damaging(0.909) TCGA-06-5416-01 19 18729022 18729022 G A TMEM59L Missense_Mutation p.S241N 0.35 tolerated(0.24) benign(0.038) TCGA-06-5416-01 19 18779772 18779772 G A KLHL26 Missense_Mutation p.R522H 0.20 tolerated(0.12) benign(0.007) TCGA-06-5416-01 19 18870945 18870945 G A CRTC1 Missense_Mutation p.E281K 0.39 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 19 18963051 18963051 C T UPF1 Silent p.F306F 0.53 TCGA-06-5416-01 19 18963840 18963840 G A UPF1 Silent p.K339K 0.16 TCGA-06-5416-01 19 18967029 18967029 G T UPF1 Missense_Mutation p.D582Y 0.15 deleterious(0) possibly_damaging(0.798) TCGA-06-5416-01 19 18967799 18967799 C T UPF1 Silent p.C646C 0.15 TCGA-06-5416-01 19 19004290 19004290 T C CERS1 Missense_Mutation p.Y115C 0.35 deleterious(0) possibly_damaging(0.588) TCGA-06-5416-01 19 19035071 19035071 G A DDX49 Missense_Mutation p.R269H 0.50 tolerated(0.11) possibly_damaging(0.738) TCGA-06-5416-01 19 19038958 19038958 C T DDX49 Missense_Mutation p.R429C 0.14 deleterious(0.01) probably_damaging(0.927) TCGA-06-5416-01 19 19043790 19043790 C T HOMER3 Missense_Mutation p.S159N 0.18 tolerated(0.14) possibly_damaging(0.638) TCGA-06-5416-01 19 19121087 19121087 G A SUGP2 Missense_Mutation p.R639W 0.57 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 19 19162498 19162498 G A ARMC6 Missense_Mutation p.R116H 0.34 tolerated(0.14) benign(0.014) TCGA-06-5416-01 19 19168506 19168506 C A ARMC6 3'UTR 0.43 TCGA-06-5416-01 19 19231829 19231829 C T TMEM161A Missense_Mutation p.R354H 0.52 deleterious(0.03) benign(0.262) TCGA-06-5416-01 19 19243255 19243255 A G TMEM161A Missense_Mutation p.Y117H 0.13 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 19 19335958 19335958 G A NCAN Silent p.P317P 0.29 TCGA-06-5416-01 19 19359640 19359640 C T NCAN Nonsense_Mutation p.R1257* 0.31 TCGA-06-5416-01 19 19381207 19381207 C T TM6SF2 Missense_Mutation p.A82T 0.13 deleterious(0) benign(0.322) TCGA-06-5416-01 19 19388548 19388548 C A SUGP1 Silent p.V592V 0.37 TCGA-06-5416-01 19 19414242 19414242 C A SUGP1 Missense_Mutation p.K226N 0.37 deleterious(0.04) possibly_damaging(0.872) TCGA-06-5416-01 19 19606652 19606652 G A GATAD2A Silent p.A238A 0.58 TCGA-06-5416-01 19 19606902 19606902 G A GATAD2A Silent p.P266P 0.12 TCGA-06-5416-01 19 19612066 19612066 G T GATAD2A Missense_Mutation p.K447N 0.09 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 19626212 19626212 C T TSSK6 Missense_Mutation p.E9K 0.19 tolerated(1) benign(0.003) TCGA-06-5416-01 19 19654133 19654133 G T CILP2 Missense_Mutation p.D352Y 0.12 deleterious(0.01) benign(0.409) TCGA-06-5416-01 19 19654864 19654864 G A CILP2 Missense_Mutation p.A504T 0.59 tolerated(0.15) benign(0.006) TCGA-06-5416-01 19 19655557 19655557 C T CILP2 Missense_Mutation p.R735C 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 1969910 1969910 C T CSNK1G2 Missense_Mutation p.R47C 0.13 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 19738055 19738055 G A LPAR2 Silent p.I13I 0.33 TCGA-06-5416-01 19 19744896 19744896 C T GMIP Missense_Mutation p.A730T 0.52 tolerated(0.42) benign(0.002) TCGA-06-5416-01 19 19748785 19748785 G A GMIP Nonsense_Mutation p.R291* 0.59 TCGA-06-5416-01 19 19767569 19767569 G A ATP13A1 Missense_Mutation p.S328F 0.10 deleterious(0.03) probably_damaging(0.971) TCGA-06-5416-01 19 19823458 19823458 G T ZNF14 Missense_Mutation p.S211Y 0.15 tolerated(0.16) possibly_damaging(0.642) TCGA-06-5416-01 19 1993045 1993045 C T BTBD2 Missense_Mutation p.D220N 0.17 deleterious(0.01) possibly_damaging(0.781) TCGA-06-5416-01 19 20045264 20045264 G T ZNF93 Missense_Mutation p.K500N 0.19 deleterious(0.04) benign(0.347) TCGA-06-5416-01 19 20117586 20117586 G A ZNF682 Missense_Mutation p.S242L 0.18 deleterious(0.04) possibly_damaging(0.697) TCGA-06-5416-01 19 20150233 20150233 G A ZNF682 5'UTR 0.25 TCGA-06-5416-01 19 20215122 20215122 G T ZNF90 Missense_Mutation p.Q26H 0.16 deleterious(0) benign(0.255) TCGA-06-5416-01 19 20235951 20235951 G T CTC-260E6.2 RNA 0.27 TCGA-06-5416-01 19 20308880 20308880 G A ZNF486 Missense_Mutation p.R454K 0.19 tolerated(1) benign(0) TCGA-06-5416-01 19 2040054 2040054 C T MKNK2 Intron 0.31 TCGA-06-5416-01 19 20807529 20807529 G T ZNF626 Missense_Mutation p.T385N 0.35 tolerated(0.13) benign(0.159) TCGA-06-5416-01 19 20844309 20844309 A G ZNF626 5'UTR 0.15 TCGA-06-5416-01 19 2102026 2102026 C T AP3D1 3'UTR 0.25 TCGA-06-5416-01 19 21132130 21132130 C A ZNF85 Missense_Mutation p.F270L 0.52 tolerated(0.2) benign(0.028) TCGA-06-5416-01 19 2117250 2117250 C A AP3D1 Missense_Mutation p.K610N 0.18 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 19 21239455 21239455 C T ZNF430 Missense_Mutation p.A114V 0.43 deleterious(0.03) benign(0.023) TCGA-06-5416-01 19 21476570 21476570 C T ZNF708 Missense_Mutation p.A400T 0.22 tolerated(0.07) possibly_damaging(0.461) TCGA-06-5416-01 19 21606576 21606576 C A ZNF493 Missense_Mutation p.T372N 0.51 deleterious(0.01) benign(0.334) TCGA-06-5416-01 19 21607091 21607091 C T ZNF493 Missense_Mutation p.P544S 0.14 deleterious(0.04) possibly_damaging(0.719) TCGA-06-5416-01 19 21607227 21607227 C A ZNF493 Missense_Mutation p.T589N 0.15 tolerated(0.13) benign(0.232) TCGA-06-5416-01 19 21607321 21607321 G A ZNF493 Silent p.K620K 0.34 TCGA-06-5416-01 19 21607419 21607419 T C ZNF493 Missense_Mutation p.V653A 0.07 deleterious(0.01) benign(0.037) TCGA-06-5416-01 19 21719117 21719117 G T ZNF429 Nonsense_Mutation p.E88* 0.15 TCGA-06-5416-01 19 21934420 21934420 G A ZNF100 Intron 0.21 TCGA-06-5416-01 19 22001988 22001988 G A ZNF43 Silent p.F13F 0.57 TCGA-06-5416-01 19 2214367 2214367 A G DOT1L Intron 0.68 TCGA-06-5416-01 19 22155201 22155201 G A ZNF208 Missense_Mutation p.H879Y 0.56 deleterious(0.01) unknown(0) TCGA-06-5416-01 19 22157098 22157098 T C ZNF208 Silent p.K246K 0.18 TCGA-06-5416-01 19 22362426 22362426 T C ZNF676 3'UTR 0.15 TCGA-06-5416-01 19 22363052 22363052 G T ZNF676 Missense_Mutation p.F489L 0.29 tolerated(0.41) benign(0.01) TCGA-06-5416-01 19 22363498 22363498 C A ZNF676 Nonsense_Mutation p.E341* 0.10 TCGA-06-5416-01 19 2252501 2252501 C A JSRP1 Nonsense_Mutation p.E275* 0.15 TCGA-06-5416-01 19 22585617 22585617 C A ZNF98 Missense_Mutation p.R76I 0.13 tolerated(0.07) benign(0.086) TCGA-06-5416-01 19 22605109 22605109 G T ZNF98 5'UTR 0.39 TCGA-06-5416-01 19 2275645 2275645 G T C19orf35 3'UTR 0.41 TCGA-06-5416-01 19 2276312 2276312 C T C19orf35 Silent p.A263A 0.71 TCGA-06-5416-01 19 22846660 22846660 C T ZNF492 Silent p.F63F 0.16 TCGA-06-5416-01 19 22939485 22939485 C T ZNF99 3'Flank 0.22 TCGA-06-5416-01 19 22941542 22941542 A C ZNF99 Missense_Mutation p.I390S 0.04 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 19 22941765 22941765 C T ZNF99 Missense_Mutation p.E316K 0.55 tolerated(0.77) possibly_damaging(0.677) TCGA-06-5416-01 19 22952096 22952096 C A ZNF99 Nonsense_Mutation p.E12* 0.14 TCGA-06-5416-01 19 23159277 23159277 C A ZNF728 Nonsense_Mutation p.E288* 0.32 TCGA-06-5416-01 19 23328233 23328233 T G ZNF730 Silent p.G129G 0.22 TCGA-06-5416-01 19 23329322 23329322 C T ZNF730 Silent p.F492F 0.20 TCGA-06-5416-01 19 23405974 23405974 C A ZNF724P Missense_Mutation p.R358I 0.40 tolerated(0.62) benign(0.008) TCGA-06-5416-01 19 23541731 23541731 A G ZNF91 3'UTR 0.14 TCGA-06-5416-01 19 23542194 23542194 T G ZNF91 3'UTR 0.43 TCGA-06-5416-01 19 23542683 23542683 C T ZNF91 Missense_Mutation p.R1033Q 0.15 tolerated(0.56) benign(0.402) TCGA-06-5416-01 19 23926672 23926672 T C ZNF681 Silent p.K560K 0.54 TCGA-06-5416-01 19 23927806 23927806 A C ZNF681 Missense_Mutation p.F182L 0.50 tolerated(1) benign(0.004) TCGA-06-5416-01 19 24010280 24010280 G A RPSAP58 Missense_Mutation p.G106E 0.36 deleterious(0.02) possibly_damaging(0.781) TCGA-06-5416-01 19 2421996 2421996 G T TMPRSS9 Nonsense_Mutation p.E733* 0.15 TCGA-06-5416-01 19 24309229 24309229 A G ZNF254 Missense_Mutation p.N143D 0.21 tolerated(0.07) probably_damaging(0.947) TCGA-06-5416-01 19 24310431 24310431 G T ZNF254 Missense_Mutation p.E543D 0.41 tolerated(0.08) benign(0.074) TCGA-06-5416-01 19 24310667 24310667 G A ZNF254 Missense_Mutation p.R622K 0.19 tolerated(0.64) benign(0.005) TCGA-06-5416-01 19 2762564 2762564 G A SGTA Silent p.N192N 0.15 TCGA-06-5416-01 19 2832331 2832331 G A ZNF554 Missense_Mutation p.G95E 0.14 tolerated(0.06) possibly_damaging(0.796) TCGA-06-5416-01 19 2834542 2834542 G A ZNF554 Missense_Mutation p.E437K 0.58 deleterious(0.04) benign(0.299) TCGA-06-5416-01 19 2853806 2853806 A G ZNF555 Silent p.R581R 0.36 TCGA-06-5416-01 19 2853902 2853902 C T ZNF555 Silent p.H613H 0.14 TCGA-06-5416-01 19 2917267 2917267 G T ZNF57 Missense_Mutation p.K216N 0.33 deleterious(0.02) probably_damaging(0.928) TCGA-06-5416-01 19 2933958 2933958 G A ZNF77 Silent p.F389F 0.30 TCGA-06-5416-01 19 2987912 2987912 G A TLE6 Silent p.E214E 0.27 TCGA-06-5416-01 19 30101413 30101413 G A POP4 Missense_Mutation p.R53H 0.21 tolerated(0.37) benign(0.02) TCGA-06-5416-01 19 30165096 30165096 C T PLEKHF1 Missense_Mutation p.T117M 0.45 deleterious(0.04) probably_damaging(0.967) TCGA-06-5416-01 19 30193534 30193534 C T C19orf12 3'UTR 0.23 TCGA-06-5416-01 19 30193867 30193867 G A C19orf12 Silent p.L71L 0.41 TCGA-06-5416-01 19 3028725 3028725 A C TLE2 Missense_Mutation p.F34C 0.13 deleterious(0) possibly_damaging(0.776) TCGA-06-5416-01 19 30500155 30500155 C T URI1 Silent p.D310D 0.18 TCGA-06-5416-01 19 30934897 30934897 G A ZNF536 Missense_Mutation p.S143N 0.36 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 19 30934931 30934931 C T ZNF536 Silent p.G154G 0.12 TCGA-06-5416-01 19 3119007 3119007 G A GNA11 Missense_Mutation p.A231T 0.57 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 19 3119218 3119218 G T GNA11 Missense_Mutation p.E250D 0.15 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 19 3119353 3119353 C T GNA11 Silent p.F295F 0.14 TCGA-06-5416-01 19 3155857 3155857 G T GNA15 Missense_Mutation p.K217N 0.37 deleterious(0) possibly_damaging(0.587) TCGA-06-5416-01 19 31768719 31768719 G A TSHZ3 Silent p.S660S 0.42 TCGA-06-5416-01 19 32844163 32844163 C A ZNF507 Missense_Mutation p.H143N 0.20 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 19 32844286 32844286 A G ZNF507 Missense_Mutation p.I184V 0.24 tolerated(0.57) benign(0) TCGA-06-5416-01 19 32844865 32844865 C A ZNF507 Missense_Mutation p.L377M 0.19 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 19 32851497 32851497 G A ZNF507 Missense_Mutation p.R778Q 0.17 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 19 3293326 3293326 G A CELF5 Missense_Mutation p.S447N 0.57 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 33090942 33090942 A G ANKRD27 Missense_Mutation p.Y928H 0.45 tolerated_low_confidence(0.5) benign(0.403) TCGA-06-5416-01 19 33135304 33135304 C T ANKRD27 Missense_Mutation p.R151Q 0.45 tolerated(0.09) benign(0.238) TCGA-06-5416-01 19 33167169 33167169 G A ANKRD27 5'Flank 0.22 TCGA-06-5416-01 19 33353482 33353482 C T SLC7A9 Silent p.S163S 0.46 TCGA-06-5416-01 19 33450840 33450840 C T CEP89 Missense_Mutation p.E91K 0.20 deleterious(0.02) benign(0.178) TCGA-06-5416-01 19 33457365 33457365 A G CEP89 Missense_Mutation p.I16T 0.25 deleterious(0) possibly_damaging(0.594) TCGA-06-5416-01 19 33512507 33512507 C T RHPN2 Silent p.T120T 0.19 TCGA-06-5416-01 19 33588768 33588768 C A GPATCH1 Silent p.L320L 0.37 TCGA-06-5416-01 19 33604704 33604704 C T GPATCH1 Missense_Mutation p.R642C 0.15 deleterious(0.02) benign(0.12) TCGA-06-5416-01 19 33609992 33609992 C T GPATCH1 Silent p.F830F 0.12 TCGA-06-5416-01 19 33639788 33639788 G T WDR88 Missense_Mutation p.E217D 0.48 tolerated(0.35) benign(0.03) TCGA-06-5416-01 19 33642212 33642212 A G WDR88 Missense_Mutation p.T269A 0.38 tolerated(0.44) benign(0.015) TCGA-06-5416-01 19 33696592 33696592 G A LRP3 Missense_Mutation p.D306N 0.14 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 19 33703320 33703320 G T SLC7A10 Silent p.A222A 0.22 TCGA-06-5416-01 19 3382024 3382024 G A NFIC Missense_Mutation p.M115I 0.16 tolerated(0.45) benign(0.023) TCGA-06-5416-01 19 33984220 33984220 C T PEPD Silent p.Q139Q 0.38 TCGA-06-5416-01 19 34263993 34263993 G A CHST8 3'UTR 0.18 TCGA-06-5416-01 19 34302806 34302806 G T KCTD15 Intron 0.24 TCGA-06-5416-01 19 34832727 34832727 G T KIAA0355 Missense_Mutation p.D630Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-06-5416-01 19 34868446 34868446 G T GPI Intron 0.18 TCGA-06-5416-01 19 34872420 34872420 G A GPI Nonsense_Mutation p.W278* 0.42 TCGA-06-5416-01 19 34890179 34890179 G A GPI Missense_Mutation p.R457Q 0.51 tolerated_low_confidence(0.08) benign(0.089) TCGA-06-5416-01 19 34916978 34916978 G T PDCD2L Nonsense_Mutation p.E344* 0.21 TCGA-06-5416-01 19 34981348 34981348 T G WTIP Silent p.L245L 0.15 TCGA-06-5416-01 19 35175919 35175919 C T ZNF302 Missense_Mutation p.S326L 0.74 deleterious(0.02) probably_damaging(0.988) TCGA-06-5416-01 19 35231907 35231907 G T ZNF181 Missense_Mutation p.K207N 0.24 tolerated(0.1) probably_damaging(0.977) TCGA-06-5416-01 19 35251401 35251401 G A ZNF599 Missense_Mutation p.S102F 0.44 tolerated(0.15) benign(0.002) TCGA-06-5416-01 19 3526285 3526285 G A FZR1 Silent p.K96K 0.19 TCGA-06-5416-01 19 35434787 35434787 A G ZNF30 Missense_Mutation p.H307R 0.40 deleterious(0.01) possibly_damaging(0.862) TCGA-06-5416-01 19 35449063 35449063 C T ZNF792 Missense_Mutation p.E566K 0.45 deleterious(0.01) possibly_damaging(0.889) TCGA-06-5416-01 19 35449593 35449593 G A ZNF792 Missense_Mutation p.T389M 0.41 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 19 35451893 35451893 G A ZNF792 Silent p.C13C 0.29 TCGA-06-5416-01 19 35501038 35501038 G A GRAMD1A Missense_Mutation p.R123H 0.23 deleterious(0.02) probably_damaging(0.982) TCGA-06-5416-01 19 35506838 35506838 C A GRAMD1A Missense_Mutation p.L394I 0.21 tolerated(0.45) benign(0.025) TCGA-06-5416-01 19 35551649 35551649 C T HPN Missense_Mutation p.R247W 0.39 tolerated(0.18) possibly_damaging(0.624) TCGA-06-5416-01 19 35556232 35556232 G A HPN Missense_Mutation p.G297D 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 35610273 35610273 G A FXYD3 Missense_Mutation p.R55H 0.20 tolerated(0.69) benign(0.001) TCGA-06-5416-01 19 35616328 35616328 G A LGI4 Silent p.I461I 0.32 TCGA-06-5416-01 19 35646349 35646349 G T FXYD5 5'UTR 0.47 TCGA-06-5416-01 19 35718900 35718900 T G FAM187B Missense_Mutation p.E228D 0.17 tolerated(0.55) benign(0.022) TCGA-06-5416-01 19 35758068 35758068 G A LSR Missense_Mutation p.G449S 0.34 tolerated(0.15) possibly_damaging(0.849) TCGA-06-5416-01 19 35786626 35786626 G A MAG Missense_Mutation p.A53T 0.26 tolerated(0.22) benign(0.091) TCGA-06-5416-01 19 35790603 35790603 C T MAG Missense_Mutation p.R188W 0.60 deleterious(0.01) probably_damaging(0.948) TCGA-06-5416-01 19 35800938 35800938 C T MAG Missense_Mutation p.R465C 0.45 deleterious(0.02) possibly_damaging(0.642) TCGA-06-5416-01 19 35842837 35842837 C T FFAR1 Missense_Mutation p.A128V 0.44 tolerated(1) benign(0.004) TCGA-06-5416-01 19 35850010 35850010 T C FFAR3 Missense_Mutation p.V73A 0.15 tolerated(0.46) benign(0.029) TCGA-06-5416-01 19 3586836 3586836 A G GIPC3 Missense_Mutation p.N146D 0.62 tolerated(1) benign(0.06) TCGA-06-5416-01 19 3589487 3589487 G A GIPC3 Silent p.A213A 0.41 TCGA-06-5416-01 19 35941112 35941112 G A FFAR2 Missense_Mutation p.E166K 0.19 tolerated(0.26) benign(0.016) TCGA-06-5416-01 19 35991478 35991478 G A DMKN Missense_Mutation p.A415V 0.52 tolerated(0.33) unknown(0) TCGA-06-5416-01 19 36004341 36004341 C T DMKN Missense_Mutation p.A13T 0.22 tolerated(0.09) probably_damaging(0.987) TCGA-06-5416-01 19 3600558 3600558 G A TBXA2R Silent p.I25I 0.12 TCGA-06-5416-01 19 36014429 36014429 C T SBSN Missense_Mutation p.A586T 0.15 tolerated(0.34) benign(0.121) TCGA-06-5416-01 19 36033457 36033457 C T GAPDHS Silent p.F202F 0.27 TCGA-06-5416-01 19 36034127 36034127 C A GAPDHS Intron 0.63 TCGA-06-5416-01 19 36041913 36041913 G A ATP4A Missense_Mutation p.R996W 0.29 deleterious(0.04) probably_damaging(0.998) TCGA-06-5416-01 19 36042387 36042387 C A ATP4A Missense_Mutation p.K949N 0.15 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 36050914 36050914 C T ATP4A Silent p.S283S 0.20 TCGA-06-5416-01 19 36109808 36109808 C T HAUS5 Missense_Mutation p.L346F 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 36109940 36109940 C T HAUS5 Missense_Mutation p.R390C 0.21 tolerated(0.08) probably_damaging(0.99) TCGA-06-5416-01 19 36113576 36113576 G A HAUS5 Silent p.E575E 0.46 TCGA-06-5416-01 19 362107 362107 C T THEG 3'UTR 0.12 TCGA-06-5416-01 19 36229444 36229444 C T KMT2B Missense_Mutation p.R2712W 0.58 probably_damaging(0.945) TCGA-06-5416-01 19 362418 362418 C T THEG Missense_Mutation p.A308T 0.48 tolerated(0.14) benign(0.281) TCGA-06-5416-01 19 36271684 36271684 C T ARHGAP33 Silent p.I265I 0.43 TCGA-06-5416-01 19 36271889 36271889 G T ARHGAP33 Silent p.R299R 0.47 TCGA-06-5416-01 19 36277922 36277922 C T ARHGAP33 Silent p.D689D 0.47 TCGA-06-5416-01 19 36278764 36278764 C T ARHGAP33 Silent p.G938G 0.53 TCGA-06-5416-01 19 3633512 3633512 C T PIP5K1C Missense_Mutation p.D643N 0.09 deleterious_low_confidence(0) benign(0.102) TCGA-06-5416-01 19 36340213 36340213 C A NPHS1 Silent p.V255V 0.12 TCGA-06-5416-01 19 36351891 36351891 G A KIRREL2 Missense_Mutation p.G337R 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 36362644 36362644 T C APLP1 Missense_Mutation p.V223A 0.43 tolerated(0.73) benign(0.002) TCGA-06-5416-01 19 36394790 36394790 C T HCST Missense_Mutation p.R76C 0.20 deleterious_low_confidence(0.04) possibly_damaging(0.898) TCGA-06-5416-01 19 36395486 36395486 C T TYROBP Silent p.R109R 0.44 TCGA-06-5416-01 19 3643247 3643247 C T PIP5K1C Missense_Mutation p.R548Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.871) TCGA-06-5416-01 19 36515333 36515333 G A CLIP3 Missense_Mutation p.R295C 0.26 deleterious(0.01) benign(0.446) TCGA-06-5416-01 19 36517118 36517118 G A CLIP3 Silent p.I204I 0.17 TCGA-06-5416-01 19 36518143 36518143 G A CLIP3 Missense_Mutation p.A66V 0.20 tolerated(0.08) possibly_damaging(0.874) TCGA-06-5416-01 19 36575642 36575642 G T WDR62 Missense_Mutation p.E546D 0.12 tolerated(0.46) probably_damaging(0.954) TCGA-06-5416-01 19 36727701 36727701 G T ZNF146 Missense_Mutation p.R120I 0.22 deleterious(0.02) benign(0.013) TCGA-06-5416-01 19 36940277 36940277 C A ZNF566 Nonsense_Mutation p.E288* 0.22 TCGA-06-5416-01 19 36940626 36940626 G A ZNF566 Silent p.F171F 0.43 TCGA-06-5416-01 19 37005109 37005109 G A ZNF260 Silent p.S344S 0.21 TCGA-06-5416-01 19 37130605 37130605 A C ZNF461 Missense_Mutation p.H214Q 0.49 deleterious(0) possibly_damaging(0.897) TCGA-06-5416-01 19 37147369 37147369 C A ZNF461 Missense_Mutation p.E71D 0.42 tolerated(0.6) benign(0.007) TCGA-06-5416-01 19 37240788 37240788 C T ZNF850 Missense_Mutation p.R385Q 0.27 deleterious(0.02) probably_damaging(0.988) TCGA-06-5416-01 19 3730658 3730658 G T TJP3 Missense_Mutation p.Q198H 0.13 tolerated(0.09) benign(0.005) TCGA-06-5416-01 19 3731961 3731961 C A TJP3 Silent p.I223I 0.22 TCGA-06-5416-01 19 3733891 3733891 C T TJP3 Silent p.S295S 0.56 TCGA-06-5416-01 19 37368556 37368556 G A ZNF345 Missense_Mutation p.R275Q 0.23 tolerated(1) benign(0.011) TCGA-06-5416-01 19 3744028 3744028 C T TJP3 Silent p.I654I 0.30 TCGA-06-5416-01 19 37440531 37440531 C T ZNF568 Missense_Mutation p.A159V 0.37 tolerated(0.09) benign(0.009) TCGA-06-5416-01 19 37441173 37441173 G A ZNF568 Missense_Mutation p.R373Q 0.43 tolerated(0.46) probably_damaging(0.995) TCGA-06-5416-01 19 37488163 37488163 C T ZNF568 Nonsense_Mutation p.R460* 0.41 TCGA-06-5416-01 19 3750630 3750630 C T TJP3 Missense_Mutation p.A912V 0.08 tolerated(0.59) benign(0.001) TCGA-06-5416-01 19 375804 375804 C T THEG Missense_Mutation p.G56E 0.13 tolerated(0.13) possibly_damaging(0.755) TCGA-06-5416-01 19 3765268 3765268 G A MRPL54 Missense_Mutation p.V75I 0.31 deleterious(0.01) possibly_damaging(0.642) TCGA-06-5416-01 19 37677614 37677614 G A ZNF585B Silent p.C275C 0.45 TCGA-06-5416-01 19 37677904 37677904 T C ZNF585B Missense_Mutation p.T179A 0.24 deleterious(0.04) benign(0) TCGA-06-5416-01 19 3778193 3778193 G A MATK Silent p.S505S 0.46 TCGA-06-5416-01 19 3784338 3784338 C T MATK Missense_Mutation p.E83K 0.35 tolerated(0.67) benign(0.188) TCGA-06-5416-01 19 37853723 37853723 G A HKR1 Silent p.S342S 0.17 TCGA-06-5416-01 19 37854577 37854577 G T HKR1 Missense_Mutation p.R627M 0.16 tolerated(0.17) probably_damaging(0.997) TCGA-06-5416-01 19 37961278 37961278 G A ZNF570 Missense_Mutation p.A8T 0.44 tolerated(0.15) benign(0.001) TCGA-06-5416-01 19 38056652 38056652 G A ZNF571 Silent p.N226N 0.19 TCGA-06-5416-01 19 38056772 38056772 C A ZNF571 Missense_Mutation p.Q186H 0.22 deleterious(0.04) benign(0.081) TCGA-06-5416-01 19 38103576 38103576 G A ZNF540 Silent p.K465K 0.25 TCGA-06-5416-01 19 38103999 38103999 C A ZNF540 Silent p.P606P 0.19 TCGA-06-5416-01 19 38125985 38125985 C T ZFP30 Missense_Mutation p.R486K 0.23 tolerated(0.22) probably_damaging(0.995) TCGA-06-5416-01 19 38126834 38126834 C T ZFP30 Missense_Mutation p.R203Q 0.35 tolerated(1) probably_damaging(0.995) TCGA-06-5416-01 19 38159955 38159955 C T ZNF781 3'UTR 0.19 TCGA-06-5416-01 19 38160792 38160792 C T ZNF781 Silent p.E86E 0.44 TCGA-06-5416-01 19 38188209 38188209 G A ZNF607 3'UTR 0.43 TCGA-06-5416-01 19 38230342 38230342 C T ZNF573 Missense_Mutation p.R350K 0.20 tolerated(0.17) benign(0.003) TCGA-06-5416-01 19 38572121 38572121 C T SIPA1L3 5'UTR 0.29 TCGA-06-5416-01 19 38572754 38572754 C T SIPA1L3 Silent p.D183D 0.26 TCGA-06-5416-01 19 38573338 38573338 C T SIPA1L3 Missense_Mutation p.A378V 0.20 tolerated(0.19) benign(0.034) TCGA-06-5416-01 19 38633332 38633332 A G SIPA1L3 Missense_Mutation p.Y1172C 0.18 deleterious(0.03) probably_damaging(0.91) TCGA-06-5416-01 19 38780793 38780793 C A SPINT2 Nonsense_Mutation p.C142* 0.24 TCGA-06-5416-01 19 38794891 38794891 C A C19orf33 5'UTR 0.25 TCGA-06-5416-01 19 38796124 38796124 G T YIF1B Silent p.I271I 0.45 TCGA-06-5416-01 19 38869973 38869973 G A PSMD8 Silent p.T210T 0.17 TCGA-06-5416-01 19 38875023 38875023 G A GGN 3'UTR 0.18 TCGA-06-5416-01 19 38875097 38875097 C A GGN Silent p.V638V 0.14 TCGA-06-5416-01 19 38876173 38876173 T C GGN Missense_Mutation p.T577A 0.30 tolerated_low_confidence(0.18) possibly_damaging(0.494) TCGA-06-5416-01 19 38876772 38876772 C T GGN Missense_Mutation p.R377Q 0.23 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 19 38877544 38877544 G A GGN Missense_Mutation p.P120S 0.33 deleterious_low_confidence(0.01) unknown(0) TCGA-06-5416-01 19 38903880 38903880 T G RASGRP4 Missense_Mutation p.K457Q 0.28 deleterious(0.03) possibly_damaging(0.721) TCGA-06-5416-01 19 38948176 38948176 G A RYR1 Missense_Mutation p.V611M 0.23 probably_damaging(0.962) TCGA-06-5416-01 19 38954094 38954094 G A RYR1 Missense_Mutation p.R870Q 0.21 probably_damaging(0.998) TCGA-06-5416-01 19 38958269 38958269 T G RYR1 Silent p.S1066S 0.21 TCGA-06-5416-01 19 38980786 38980786 C T RYR1 Missense_Mutation p.A1962V 0.19 benign(0.047) TCGA-06-5416-01 19 38980863 38980863 G A RYR1 Missense_Mutation p.A1988T 0.41 benign(0.415) TCGA-06-5416-01 19 38983188 38983188 C T RYR1 Silent p.R2062R 0.42 TCGA-06-5416-01 19 38991616 38991616 G A RYR1 Missense_Mutation p.A2534T 0.27 benign(0.046) TCGA-06-5416-01 19 39008114 39008114 G A RYR1 Silent p.P3267P 0.20 TCGA-06-5416-01 19 39034203 39034203 C T RYR1 Missense_Mutation p.S3937L 0.46 benign(0) TCGA-06-5416-01 19 39037099 39037099 C T RYR1 Silent p.I4009I 0.48 TCGA-06-5416-01 19 3905480 3905480 C T ATCAY Missense_Mutation p.T62M 0.51 deleterious(0.01) probably_damaging(0.973) TCGA-06-5416-01 19 39062845 39062845 C T RYR1 Missense_Mutation p.R4645W 0.21 unknown(0) TCGA-06-5416-01 19 39068594 39068594 C T RYR1 Missense_Mutation p.R4737W 0.38 unknown(0) TCGA-06-5416-01 19 3907775 3907775 C T ATCAY Silent p.S134S 0.47 TCGA-06-5416-01 19 39100274 39100274 C T MAP4K1 Missense_Mutation p.R323H 0.12 tolerated(0.12) benign(0.272) TCGA-06-5416-01 19 39114826 39114826 G A EIF3K Missense_Mutation p.D90N 0.44 tolerated(0.19) benign(0.071) TCGA-06-5416-01 19 39219977 39219977 G A ACTN4 Missense_Mutation p.A881T 0.23 tolerated(0.18) probably_damaging(0.988) TCGA-06-5416-01 19 39225005 39225005 C A CAPN12 Missense_Mutation p.R590I 0.20 tolerated(0.46) benign(0.1) TCGA-06-5416-01 19 39303110 39303110 G T LGALS4 Missense_Mutation p.S32Y 0.20 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 19 39303571 39303571 G T LGALS4 5'UTR 0.19 TCGA-06-5416-01 19 39369822 39369822 C A SIRT2 Missense_Mutation p.R381S 0.15 tolerated_low_confidence(0.35) benign(0.069) TCGA-06-5416-01 19 3938726 3938726 C T NMRK2 Missense_Mutation p.L98F 0.18 deleterious(0.03) benign(0.283) TCGA-06-5416-01 19 39398202 39398202 G A NFKBIB Missense_Mutation p.R291H 0.43 tolerated(0.17) benign(0.007) TCGA-06-5416-01 19 39410465 39410465 G T SARS2 Silent p.R234R 0.15 TCGA-06-5416-01 19 39416899 39416899 G A SARS2 Silent p.I103I 0.43 TCGA-06-5416-01 19 3942159 3942159 G A NMRK2 Missense_Mutation p.R194H 0.50 tolerated_low_confidence(0.23) benign(0) TCGA-06-5416-01 19 39421773 39421773 C A MRPS12 5'UTR 0.45 TCGA-06-5416-01 19 39437126 39437126 G T CTC-360G5.8 Silent p.I86I 0.18 TCGA-06-5416-01 19 3959260 3959260 C T DAPK3 Missense_Mutation p.A402T 0.47 tolerated_low_confidence(0.39) benign(0.001) TCGA-06-5416-01 19 39760138 39760138 G A IFNL2 Missense_Mutation p.R94H 0.25 deleterious(0.03) possibly_damaging(0.889) TCGA-06-5416-01 19 3977992 3977992 C T EEF2 Missense_Mutation p.R631Q 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 19 39787053 39787053 G A IFNL1 5'UTR 0.21 TCGA-06-5416-01 19 39789108 39789108 C T IFNL1 Silent p.A185A 0.20 TCGA-06-5416-01 19 39819703 39819703 C T GMFG Silent p.P98P 0.44 TCGA-06-5416-01 19 39826659 39826659 T C GMFG 5'UTR 0.19 TCGA-06-5416-01 19 3984284 3984284 G T EEF2 Missense_Mutation p.S23Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 39860404 39860404 G T SAMD4B Missense_Mutation p.M102I 0.27 deleterious(0.01) benign(0.291) TCGA-06-5416-01 19 39871682 39871682 G A SAMD4B Missense_Mutation p.R634H 0.22 tolerated(1) benign(0.006) TCGA-06-5416-01 19 39879801 39879801 C A PAF1 Nonsense_Mutation p.E167* 0.47 TCGA-06-5416-01 19 39914050 39914050 G T PLEKHG2 Nonsense_Mutation p.E786* 0.24 TCGA-06-5416-01 19 39914141 39914141 G A PLEKHG2 Missense_Mutation p.R816Q 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-06-5416-01 19 39961141 39961141 G A SUPT5H Missense_Mutation p.R552Q 0.36 tolerated(0.08) benign(0.332) TCGA-06-5416-01 19 39964988 39964988 G T SUPT5H Missense_Mutation p.Q922H 0.15 tolerated(0.58) benign(0.289) TCGA-06-5416-01 19 39967062 39967062 C T SUPT5H 3'UTR 0.25 TCGA-06-5416-01 19 39998563 39998563 G A DLL3 Silent p.T589T 0.31 TCGA-06-5416-01 19 40200019 40200019 G A LGALS14 3'Flank 0.19 TCGA-06-5416-01 19 40321042 40321042 C T DYRK1B Silent p.S115S 0.23 TCGA-06-5416-01 19 40325405 40325405 C T FBL Missense_Mutation p.E282K 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 40357476 40357476 G A FCGBP Silent p.A5279A 0.27 TCGA-06-5416-01 19 40362866 40362866 A G FCGBP Silent p.S5068S 0.16 TCGA-06-5416-01 19 40370212 40370212 C T FCGBP Missense_Mutation p.E4152K 0.15 possibly_damaging(0.635) TCGA-06-5416-01 19 40383985 40383985 C T FCGBP Missense_Mutation p.G3209S 0.19 probably_damaging(0.961) TCGA-06-5416-01 19 40392442 40392442 A T FCGBP Missense_Mutation p.C2688S 0.26 benign(0.005) TCGA-06-5416-01 19 40408449 40408449 G T FCGBP Missense_Mutation p.L1464I 0.14 probably_damaging(0.999) TCGA-06-5416-01 19 40411971 40411971 G A FCGBP Silent p.G1219G 0.19 TCGA-06-5416-01 19 40419814 40419814 C T FCGBP Silent p.Q1060Q 0.17 TCGA-06-5416-01 19 40478327 40478327 G A PSMC4 Missense_Mutation p.D63N 0.21 tolerated(0.61) possibly_damaging(0.641) TCGA-06-5416-01 19 4047854 4047854 C T ZBTB7A Missense_Mutation p.D551N 0.59 deleterious_low_confidence(0.01) possibly_damaging(0.555) TCGA-06-5416-01 19 4048227 4048227 C A ZBTB7A Missense_Mutation p.K426N 0.18 deleterious(0) possibly_damaging(0.835) TCGA-06-5416-01 19 40485856 40485856 C T PSMC4 Missense_Mutation p.A269V 0.43 deleterious(0) probably_damaging(0.942) TCGA-06-5416-01 19 40486024 40486024 G A PSMC4 Missense_Mutation p.D297N 0.22 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 19 40521296 40521296 C T ZNF546 Nonsense_Mutation p.R707* 0.22 TCGA-06-5416-01 19 40521473 40521473 C T ZNF546 Nonsense_Mutation p.R766* 0.23 TCGA-06-5416-01 19 40541224 40541224 C T ZNF780B Silent p.S514S 0.30 TCGA-06-5416-01 19 40541757 40541757 C T ZNF780B Missense_Mutation p.E337K 0.16 tolerated(0.05) possibly_damaging(0.849) TCGA-06-5416-01 19 40580033 40580033 C T ZNF780A 3'UTR 0.07 TCGA-06-5416-01 19 40698424 40698424 C T MAP3K10 Silent p.G162G 0.18 TCGA-06-5416-01 19 40902514 40902514 A G PRX Missense_Mutation p.V582A 0.46 tolerated(0.5) benign(0.294) TCGA-06-5416-01 19 40904471 40904471 G A PRX Intron 0.24 TCGA-06-5416-01 19 40929228 40929228 G A SERTAD1 Missense_Mutation p.R76C 0.48 deleterious(0) probably_damaging(0.966) TCGA-06-5416-01 19 41074100 41074100 G A SPTBN4 Missense_Mutation p.E2290K 0.38 tolerated_low_confidence(0.24) possibly_damaging(0.678) TCGA-06-5416-01 19 41084382 41084382 C A SHKBP1 Missense_Mutation p.L112I 0.21 deleterious(0.02) benign(0.09) TCGA-06-5416-01 19 41092830 41092830 C A SHKBP1 Nonsense_Mutation p.S439* 0.20 TCGA-06-5416-01 19 41094555 41094555 G T SHKBP1 Silent p.R454R 0.19 TCGA-06-5416-01 19 41117764 41117764 G T LTBP4 Splice_Site p.X752_splice 0.14 TCGA-06-5416-01 19 41123037 41123037 C T LTBP4 Silent p.C1059C 0.15 TCGA-06-5416-01 19 41129555 41129555 C T LTBP4 Silent p.G1267G 0.51 TCGA-06-5416-01 19 41132887 41132887 C T LTBP4 Silent p.F1397F 0.37 TCGA-06-5416-01 19 4117524 4117524 C T MAP2K2 Missense_Mutation p.E66K 0.16 deleterious(0.01) possibly_damaging(0.895) TCGA-06-5416-01 19 41281535 41281535 C T MIA Silent p.L30L 0.26 TCGA-06-5416-01 19 41281575 41281575 G A MIA Splice_Site p.X43_splice 0.48 TCGA-06-5416-01 19 41283360 41283360 C A MIA 3'UTR 0.21 TCGA-06-5416-01 19 41286315 41286315 C T RAB4B Silent p.I41I 0.15 TCGA-06-5416-01 19 41442006 41442006 G A CYP2B7P RNA 0.40 TCGA-06-5416-01 19 41448074 41448074 C T AC092071.1 5'Flank 0.17 TCGA-06-5416-01 19 41450682 41450682 G A AC092071.1 5'Flank 0.24 TCGA-06-5416-01 19 41594974 41594974 C T CYP2A13 Silent p.F107F 0.21 TCGA-06-5416-01 19 41594982 41594982 T C CYP2A13 Missense_Mutation p.L110P 0.44 tolerated(0.09) probably_damaging(0.965) TCGA-06-5416-01 19 41601717 41601717 C A CYP2A13 Missense_Mutation p.F452L 0.46 tolerated(0.12) benign(0.076) TCGA-06-5416-01 19 41601774 41601774 C T CYP2A13 Silent p.I471I 0.44 TCGA-06-5416-01 19 4168400 4168400 C T CREB3L3 Missense_Mutation p.S256L 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 19 41707171 41707171 G T CYP2S1 Missense_Mutation p.K290N 0.41 deleterious(0.03) benign(0.438) TCGA-06-5416-01 19 41712638 41712638 G A CYP2S1 3'UTR 0.18 TCGA-06-5416-01 19 41743966 41743966 C T AXL Missense_Mutation p.P301S 0.21 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 19 41749571 41749571 G A AXL Missense_Mutation p.R499H 0.19 tolerated(0.1) benign(0.081) TCGA-06-5416-01 19 41759546 41759546 G A AXL Missense_Mutation p.A657T 0.28 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 19 41784996 41784996 C A HNRNPUL1 Silent p.I267I 0.17 TCGA-06-5416-01 19 41808644 41808644 G A HNRNPUL1 Missense_Mutation p.D588N 0.21 deleterious(0.04) unknown(0) TCGA-06-5416-01 19 41884342 41884342 C A TMEM91 Missense_Mutation p.S43Y 0.16 deleterious_low_confidence(0) possibly_damaging(0.863) TCGA-06-5416-01 19 41898857 41898857 G A EXOSC5 Silent p.Y59Y 0.37 TCGA-06-5416-01 19 41928178 41928178 C T BCKDHA Silent p.F252F 0.46 TCGA-06-5416-01 19 41928594 41928594 C T BCKDHA Missense_Mutation p.A305V 0.37 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 41932709 41932709 G A B3GNT8 5'UTR 0.25 TCGA-06-5416-01 19 41937252 41937252 G A ATP5SL 3'Flank 0.45 TCGA-06-5416-01 19 42125560 42125560 C T CEACAM4 3'UTR 0.17 TCGA-06-5416-01 19 42219674 42219674 C A CEACAM5 Missense_Mutation p.S270Y 0.17 deleterious(0.02) unknown(0) TCGA-06-5416-01 19 42231240 42231240 C T CEACAM5 3'UTR 0.45 TCGA-06-5416-01 19 42354542 42354542 G A DMRTC2 Intron 0.41 TCGA-06-5416-01 19 42396887 42396887 C T ARHGEF1 Missense_Mutation p.A209V 0.57 deleterious(0) possibly_damaging(0.702) TCGA-06-5416-01 19 42463470 42463470 C T RABAC1 5'UTR 0.43 TCGA-06-5416-01 19 42485933 42485933 C T ATP1A3 Missense_Mutation p.A428T 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-06-5416-01 19 42486234 42486234 G A ATP1A3 Missense_Mutation p.R353C 0.25 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 19 42507592 42507592 C T GRIK5 Silent p.E802E 0.49 TCGA-06-5416-01 19 42546789 42546789 C T GRIK5 Missense_Mutation p.R463H 0.49 tolerated(0.07) possibly_damaging(0.775) TCGA-06-5416-01 19 42546811 42546811 C T GRIK5 Missense_Mutation p.E456K 0.21 tolerated(0.57) benign(0.196) TCGA-06-5416-01 19 42599836 42599836 G T POU2F2 Missense_Mutation p.S272Y 0.66 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 19 4262012 4262012 A G CCDC94 Silent p.R203R 0.16 TCGA-06-5416-01 19 42754010 42754010 G T ERF Silent p.V114V 0.19 TCGA-06-5416-01 19 42796559 42796559 C T CIC Missense_Mutation p.A1039V 0.15 probably_damaging(0.935) TCGA-06-5416-01 19 42798415 42798415 G T CIC Missense_Mutation p.S1429I 0.18 probably_damaging(0.944) TCGA-06-5416-01 19 42838360 42838360 G A MEGF8 Missense_Mutation p.A185T 0.31 tolerated(0.44) benign(0.002) TCGA-06-5416-01 19 42840265 42840265 C T MEGF8 Silent p.H337H 0.36 TCGA-06-5416-01 19 42856525 42856525 G A MEGF8 Silent p.A1022A 0.44 TCGA-06-5416-01 19 42861028 42861028 C T MEGF8 Silent p.P1508P 0.20 TCGA-06-5416-01 19 42861636 42861636 C T MEGF8 Silent p.G1570G 0.18 TCGA-06-5416-01 19 42912205 42912205 A G LIPE Missense_Mutation p.F527L 0.23 deleterious(0.03) probably_damaging(0.955) TCGA-06-5416-01 19 43031549 43031549 G A CEACAM1 Missense_Mutation p.S23L 0.19 tolerated(0.06) probably_damaging(0.998) TCGA-06-5416-01 19 4306206 4306206 G A FSD1 Silent p.A41A 0.15 TCGA-06-5416-01 19 43097825 43097825 G A CEACAM8 Nonsense_Mutation p.R98* 0.45 TCGA-06-5416-01 19 43098984 43098984 C T CEACAM8 5'UTR 0.19 TCGA-06-5416-01 19 43099073 43099074 - T CEACAM8 5'UTR 0.13 TCGA-06-5416-01 19 43233424 43233424 G T PSG3 Missense_Mutation p.S365Y 0.25 tolerated(1) benign(0.052) TCGA-06-5416-01 19 43237070 43237070 C A PSG3 Missense_Mutation p.S192I 0.21 deleterious(0) benign(0.319) TCGA-06-5416-01 19 43243002 43243002 A G PSG3 Missense_Mutation p.Y102H 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 43244575 43244575 G A PSG3 5'UTR 0.22 TCGA-06-5416-01 19 4325460 4325460 C T STAP2 Silent p.P304P 0.39 TCGA-06-5416-01 19 43371257 43371257 G T PSG1 3'Flank 0.13 TCGA-06-5416-01 19 43371945 43371945 C T PSG1 3'UTR 0.24 TCGA-06-5416-01 19 43414961 43414961 C T PSG6 Silent p.E159E 0.22 TCGA-06-5416-01 19 43430689 43430689 G A PSG7 Silent p.L297L 0.24 TCGA-06-5416-01 19 43688933 43688933 C T PSG5 Splice_Site p.X144_splice 0.22 TCGA-06-5416-01 19 43689211 43689211 A T PSG5 Silent p.V51V 0.22 TCGA-06-5416-01 19 43689283 43689283 G T PSG5 Missense_Mutation p.F27L 0.19 tolerated(0.06) probably_damaging(0.992) TCGA-06-5416-01 19 43697444 43697444 T G PSG4 3'UTR 0.20 TCGA-06-5416-01 19 43702363 43702363 C A PSG4 Silent p.V165V 0.18 TCGA-06-5416-01 19 43708085 43708085 C T PSG4 Missense_Mutation p.R128H 0.44 deleterious(0.01) possibly_damaging(0.803) TCGA-06-5416-01 19 43708089 43708089 G A PSG4 Nonsense_Mutation p.R127* 0.19 TCGA-06-5416-01 19 43920085 43920085 G A TEX101 Missense_Mutation p.R23H 0.26 tolerated(0.64) benign(0.002) TCGA-06-5416-01 19 43920545 43920545 G A TEX101 Missense_Mutation p.A95T 0.18 tolerated(0.06) probably_damaging(0.973) TCGA-06-5416-01 19 44001151 44001151 T G PHLDB3 Intron 0.47 TCGA-06-5416-01 19 44010907 44010907 G A ETHE1 3'UTR 0.26 TCGA-06-5416-01 19 44011031 44011031 G A ETHE1 Missense_Mutation p.R246C 0.15 tolerated(0.05) benign(0.001) TCGA-06-5416-01 19 44118221 44118221 C T SRRM5 Missense_Mutation p.P650S 0.24 tolerated(0.13) benign(0.073) TCGA-06-5416-01 19 44244303 44244303 C T SMG9 Missense_Mutation p.D257N 0.42 tolerated(0.07) possibly_damaging(0.656) TCGA-06-5416-01 19 44244329 44244329 C T SMG9 Missense_Mutation p.R248Q 0.17 tolerated(0.51) benign(0.251) TCGA-06-5416-01 19 44273618 44273618 C T KCNN4 Missense_Mutation p.R342H 0.45 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 44302707 44302707 G A LYPD5 Silent p.I139I 0.23 TCGA-06-5416-01 19 4432037 4432037 G A CHAF1A Missense_Mutation p.R679H 0.19 tolerated(0.46) benign(0.115) TCGA-06-5416-01 19 44351240 44351240 A G ZNF283 Missense_Mutation p.I163V 0.36 tolerated(0.52) benign(0.013) TCGA-06-5416-01 19 44351685 44351685 A C ZNF283 Missense_Mutation p.K311T 0.44 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 19 44352373 44352373 G T ZNF283 Missense_Mutation p.E540D 0.27 deleterious(0.05) benign(0.014) TCGA-06-5416-01 19 44376761 44376761 G T ZNF404 Nonsense_Mutation p.C535* 0.41 TCGA-06-5416-01 19 44376841 44376841 G A ZNF404 Nonsense_Mutation p.R509* 0.13 TCGA-06-5416-01 19 44514423 44514423 G A ZNF230 Missense_Mutation p.G78S 0.46 tolerated(0.45) benign(0.087) TCGA-06-5416-01 19 44515485 44515485 C T ZNF230 Missense_Mutation p.R432W 0.53 deleterious(0.01) possibly_damaging(0.82) TCGA-06-5416-01 19 44531630 44531630 G A ZNF222 Missense_Mutation p.E84K 0.27 tolerated(0.35) possibly_damaging(0.757) TCGA-06-5416-01 19 44536116 44536116 G T ZNF222 Missense_Mutation p.D137Y 0.18 deleterious(0.04) benign(0.424) TCGA-06-5416-01 19 44571092 44571092 C A ZNF223 Missense_Mutation p.P371T 0.23 deleterious(0.04) probably_damaging(0.955) TCGA-06-5416-01 19 44590299 44590299 G T ZNF284 Missense_Mutation p.R223I 0.18 deleterious(0.01) probably_damaging(0.967) TCGA-06-5416-01 19 44611586 44611586 G T ZNF224 Nonsense_Mutation p.E425* 0.41 TCGA-06-5416-01 19 44611972 44611972 G A ZNF224 Silent p.S553S 0.47 TCGA-06-5416-01 19 44612174 44612174 G A ZNF224 Missense_Mutation p.E621K 0.38 tolerated(0.06) benign(0.009) TCGA-06-5416-01 19 44635622 44635622 G T ZNF225 Missense_Mutation p.E285D 0.19 deleterious(0) possibly_damaging(0.708) TCGA-06-5416-01 19 44660450 44660450 G A ZNF234 Missense_Mutation p.R94Q 0.19 tolerated(0.21) benign(0.001) TCGA-06-5416-01 19 44661044 44661044 C T ZNF234 Missense_Mutation p.T292I 0.18 tolerated(0.25) benign(0.004) TCGA-06-5416-01 19 44661812 44661812 G A ZNF234 Missense_Mutation p.S548N 0.16 tolerated(0.12) benign(0.008) TCGA-06-5416-01 19 44661999 44661999 T C ZNF234 Silent p.S610S 0.17 TCGA-06-5416-01 19 44680836 44680836 C A ZNF226 Nonsense_Mutation p.S474* 0.23 TCGA-06-5416-01 19 44732684 44732684 G A ZNF227 Missense_Mutation p.R49Q 0.23 tolerated(0.5) benign(0.004) TCGA-06-5416-01 19 44740777 44740777 C T ZNF227 Nonsense_Mutation p.R732* 0.15 TCGA-06-5416-01 19 44778464 44778464 C T ZNF233 Missense_Mutation p.L551F 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 44792033 44792033 C T ZNF235 Missense_Mutation p.V519M 0.45 tolerated(0.06) probably_damaging(0.982) TCGA-06-5416-01 19 44792041 44792041 C T ZNF235 Missense_Mutation p.R516Q 0.22 deleterious(0.02) benign(0.055) TCGA-06-5416-01 19 44844692 44844692 C A CTC-512J12.6 Splice_Site p.X6_splice 0.16 TCGA-06-5416-01 19 44847432 44847432 T G ZNF112 5'UTR 0.18 TCGA-06-5416-01 19 44891874 44891874 C T ZNF285 Missense_Mutation p.R178H 0.12 tolerated(0.62) benign(0) TCGA-06-5416-01 19 44896589 44896589 C A ZNF285 Missense_Mutation p.K19N 0.19 deleterious(0.01) benign(0.326) TCGA-06-5416-01 19 44933002 44933002 C A ZNF229 Missense_Mutation p.G652C 0.17 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 19 44933346 44933346 C A ZNF229 Missense_Mutation p.R537I 0.14 deleterious(0) possibly_damaging(0.655) TCGA-06-5416-01 19 44933496 44933496 C A ZNF229 Missense_Mutation p.R487M 0.19 deleterious(0) possibly_damaging(0.694) TCGA-06-5416-01 19 44934217 44934217 T A ZNF229 Nonsense_Mutation p.K247* 0.42 TCGA-06-5416-01 19 44980881 44980881 T G ZNF180 Missense_Mutation p.E606A 0.45 deleterious(0.04) benign(0.151) TCGA-06-5416-01 19 45015188 45015188 C A CEACAM20 RNA 0.23 TCGA-06-5416-01 19 4511388 4511388 T G PLIN4 Missense_Mutation p.K848Q 0.50 deleterious(0.01) benign(0.443) TCGA-06-5416-01 19 4511900 4511900 G A PLIN4 Missense_Mutation p.T677I 0.08 deleterious(0.02) possibly_damaging(0.638) TCGA-06-5416-01 19 4513161 4513161 C T PLIN4 Missense_Mutation p.V257I 0.43 deleterious(0.02) possibly_damaging(0.638) TCGA-06-5416-01 19 45150642 45150642 C T PVR Missense_Mutation p.A76V 0.20 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 45150748 45150748 C T PVR Silent p.F111F 0.16 TCGA-06-5416-01 19 45162090 45162090 C A PVR Missense_Mutation p.L358M 0.18 deleterious(0.02) benign(0.034) TCGA-06-5416-01 19 45176109 45176109 C T CEACAM19 Silent p.I99I 0.20 TCGA-06-5416-01 19 45206715 45206715 C T CEACAM16 Missense_Mutation p.S45L 0.48 deleterious(0.04) benign(0.016) TCGA-06-5416-01 19 4523682 4523682 C A PLIN5 Missense_Mutation p.R417I 0.13 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-06-5416-01 19 4525767 4525767 G A PLIN5 Missense_Mutation p.R200C 0.53 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 19 45284285 45284285 C T CBLC Silent p.F159F 0.14 TCGA-06-5416-01 19 4529021 4529021 C A PLIN5 Intron 0.17 TCGA-06-5416-01 19 45295742 45295742 C A CBLC Missense_Mutation p.L370I 0.19 tolerated(0.13) probably_damaging(0.999) TCGA-06-5416-01 19 45316509 45316509 C T BCAM Silent p.I169I 0.42 TCGA-06-5416-01 19 45322921 45322921 C A BCAM Silent p.V567V 0.17 TCGA-06-5416-01 19 45368754 45368754 C T PVRL2 Silent p.F105F 0.39 TCGA-06-5416-01 19 45377287 45377287 G T PVRL2 Missense_Mutation p.S297I 0.24 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 19 4538425 4538425 G A LRG1 Missense_Mutation p.R191C 0.54 deleterious(0.01) probably_damaging(0.932) TCGA-06-5416-01 19 45411903 45411903 C T APOE Missense_Mutation p.A117V 0.25 deleterious(0.03) benign(0.427) TCGA-06-5416-01 19 45477722 45477722 C T CLPTM1 Silent p.H112H 0.17 TCGA-06-5416-01 19 45491373 45491373 G A CLPTM1 Silent p.A358A 0.24 TCGA-06-5416-01 19 45493732 45493732 C T CLPTM1 Silent p.F404F 0.04 TCGA-06-5416-01 19 45536001 45536001 G A RELB Missense_Mutation p.D401N 0.36 tolerated(0.11) possibly_damaging(0.873) TCGA-06-5416-01 19 45573810 45573810 C A CLASRP Missense_Mutation p.S658Y 0.20 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 19 45579080 45579080 G T ZNF296 Silent p.T113T 0.23 TCGA-06-5416-01 19 45655173 45655173 C A NKPD1 3'UTR 0.21 TCGA-06-5416-01 19 45797651 45797651 T G MARK4 Silent p.V513V 0.22 TCGA-06-5416-01 19 45805845 45805845 C T MARK4 Silent p.F712F 0.52 TCGA-06-5416-01 19 45864831 45864831 C T ERCC2 Silent p.P396P 0.39 TCGA-06-5416-01 19 45895441 45895441 C T PPP1R13L Silent p.V504V 0.50 TCGA-06-5416-01 19 45916745 45916745 G A ERCC1 3'UTR 0.32 TCGA-06-5416-01 19 45922387 45922387 G A ERCC1 Missense_Mutation p.A165V 0.35 tolerated(0.19) benign(0.138) TCGA-06-5416-01 19 45926541 45926541 A G ERCC1 Missense_Mutation p.V31A 0.29 tolerated_low_confidence(0.56) benign(0.002) TCGA-06-5416-01 19 45973774 45973774 C T FOSB Intron 0.46 TCGA-06-5416-01 19 45974167 45974167 G A FOSB Missense_Mutation p.R136H 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.522) TCGA-06-5416-01 19 45976231 45976231 T G FOSB Silent p.P326P 0.34 TCGA-06-5416-01 19 45997799 45997799 C A RTN2 Nonsense_Mutation p.G182* 0.44 TCGA-06-5416-01 19 45998020 45998020 C A RTN2 Missense_Mutation p.S108I 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 19 45998252 45998252 C T RTN2 Missense_Mutation p.D31N 0.21 deleterious_low_confidence(0) probably_damaging(0.91) TCGA-06-5416-01 19 46002639 46002639 C A PPM1N Nonsense_Mutation p.C303* 0.38 TCGA-06-5416-01 19 46027374 46027374 G T VASP Missense_Mutation p.W310C 0.14 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 46032551 46032551 C T OPA3 Nonsense_Mutation p.W102* 0.20 TCGA-06-5416-01 19 46128062 46128062 C T EML2 Silent p.P453P 0.48 TCGA-06-5416-01 19 46177376 46177376 C T GIPR Silent p.V143V 0.43 TCGA-06-5416-01 19 46181191 46181191 C A GIPR Missense_Mutation p.L318I 0.15 tolerated(1) possibly_damaging(0.487) TCGA-06-5416-01 19 46198855 46198855 C T QPCTL Missense_Mutation p.S171L 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 46268767 46268767 C A SIX5 Nonsense_Mutation p.E738* 0.47 TCGA-06-5416-01 19 46270218 46270218 G A SIX5 Silent p.S333S 0.30 TCGA-06-5416-01 19 46274622 46274622 C T DMPK Missense_Mutation p.D555N 0.29 deleterious(0.04) possibly_damaging(0.489) TCGA-06-5416-01 19 46274914 46274914 G A DMPK Silent p.R514R 0.24 TCGA-06-5416-01 19 46283227 46283227 C A DMPK Missense_Mutation p.G31C 0.19 tolerated_low_confidence(0.09) benign(0.036) TCGA-06-5416-01 19 46308167 46308167 C T RSPH6A Silent p.Q332Q 0.39 TCGA-06-5416-01 19 46308189 46308189 C T RSPH6A Missense_Mutation p.R325H 0.20 tolerated(0.13) benign(0.183) TCGA-06-5416-01 19 46320200 46320200 G T SYMPK Missense_Mutation p.F1038L 0.36 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 46326692 46326692 G A SYMPK Missense_Mutation p.L880F 0.21 deleterious(0.02) probably_damaging(0.93) TCGA-06-5416-01 19 46329489 46329489 T C SYMPK Missense_Mutation p.D775G 0.53 tolerated(0.58) benign(0.019) TCGA-06-5416-01 19 46388204 46388204 C T IRF2BP1 Missense_Mutation p.E277K 0.19 deleterious(0) possibly_damaging(0.651) TCGA-06-5416-01 19 46388262 46388262 G A IRF2BP1 Silent p.F257F 0.45 TCGA-06-5416-01 19 46388521 46388521 A G IRF2BP1 Missense_Mutation p.V171A 0.45 tolerated(0.51) benign(0.027) TCGA-06-5416-01 19 46522625 46522625 G A PGLYRP1 Silent p.C154C 0.28 TCGA-06-5416-01 19 46543672 46543672 G T IGFL4 Missense_Mutation p.L25I 0.23 tolerated(0.15) benign(0) TCGA-06-5416-01 19 4660692 4660692 C T C19orf10 Missense_Mutation p.A120T 0.13 deleterious(0.01) benign(0.22) TCGA-06-5416-01 19 46733557 46733557 C A IGFL1 Missense_Mutation p.L36M 0.21 deleterious(0.01) possibly_damaging(0.523) TCGA-06-5416-01 19 46815457 46815457 C T HIF3A Silent p.I270I 0.17 TCGA-06-5416-01 19 46915831 46915831 C T CCDC8 Silent p.R79R 0.45 TCGA-06-5416-01 19 46973246 46973246 G A PNMAL1 Silent p.A349A 0.44 TCGA-06-5416-01 19 46973369 46973369 C T PNMAL1 Silent p.A308A 0.21 TCGA-06-5416-01 19 47029037 47029037 G A PPP5D1 Silent p.I80I 0.46 TCGA-06-5416-01 19 47111521 47111521 G A CALM3 Silent p.G34G 0.44 TCGA-06-5416-01 19 47151640 47151640 G T DACT3 3'UTR 0.29 TCGA-06-5416-01 19 47234039 47234039 C T STRN4 Missense_Mutation p.D277N 0.39 tolerated(0.07) probably_damaging(0.996) TCGA-06-5416-01 19 47260223 47260223 C T FKRP 3'UTR 0.50 TCGA-06-5416-01 19 47422655 47422655 C T ARHGAP35 Silent p.S241S 0.44 TCGA-06-5416-01 19 47425249 47425249 C T ARHGAP35 Missense_Mutation p.S1106F 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 19 47503623 47503623 G A ARHGAP35 Missense_Mutation p.S1393N 0.21 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 19 47503760 47503760 C T ARHGAP35 Missense_Mutation p.R1439W 0.23 deleterious(0.02) possibly_damaging(0.804) TCGA-06-5416-01 19 47572427 47572427 G A ZC3H4 Nonsense_Mutation p.Q774* 0.49 TCGA-06-5416-01 19 47585441 47585441 C T ZC3H4 Missense_Mutation p.G444S 0.24 unknown(0) TCGA-06-5416-01 19 47588417 47588417 G A ZC3H4 Nonsense_Mutation p.R335* 0.41 TCGA-06-5416-01 19 47773904 47773904 G T CCDC9 Missense_Mutation p.K348N 0.41 deleterious(0.04) possibly_damaging(0.52) TCGA-06-5416-01 19 47910691 47910691 G A MEIS3 Silent p.L331L 0.22 TCGA-06-5416-01 19 47920588 47920588 T C MEIS3 Missense_Mutation p.Y11C 0.42 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 19 48229434 48229434 G A EHD2 Missense_Mutation p.A290T 0.65 tolerated(0.08) benign(0.012) TCGA-06-5416-01 19 48248922 48248922 C T GLTSCR2 Missense_Mutation p.R36W 0.26 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 19 48342763 48342763 C T CRX Missense_Mutation p.P147S 0.23 tolerated(0.74) benign(0.074) TCGA-06-5416-01 19 48374605 48374605 T C SULT2A1 3'UTR 0.23 TCGA-06-5416-01 19 48374660 48374660 G A SULT2A1 3'UTR 0.41 TCGA-06-5416-01 19 48389505 48389505 C T SULT2A1 Missense_Mutation p.D4N 0.42 tolerated(0.23) benign(0.001) TCGA-06-5416-01 19 4852034 4852034 C T PLIN3 Missense_Mutation p.E210K 0.40 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 19 48626224 48626224 G A LIG1 Silent p.Y733Y 0.44 TCGA-06-5416-01 19 48631233 48631233 G A LIG1 Silent p.A622A 0.21 TCGA-06-5416-01 19 48636268 48636268 C T LIG1 Missense_Mutation p.E566K 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 48800307 48800307 C A CCDC114 Missense_Mutation p.D647Y 0.24 deleterious_low_confidence(0.01) benign(0.058) TCGA-06-5416-01 19 48832701 48832701 C T EMP3 Nonsense_Mutation p.R92* 0.27 TCGA-06-5416-01 19 48879408 48879408 C A SYNGR4 Missense_Mutation p.L180M 0.19 tolerated(0.18) probably_damaging(0.982) TCGA-06-5416-01 19 48887509 48887509 G T KDELR1 Missense_Mutation p.F194L 0.27 deleterious(0) possibly_damaging(0.899) TCGA-06-5416-01 19 48967672 48967672 C T KCNJ14 Missense_Mutation p.R317C 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 48981345 48981345 G A CYTH2 Nonsense_Mutation p.W276* 0.14 TCGA-06-5416-01 19 4902821 4902821 G A ARRDC5 Missense_Mutation p.S20L 0.38 tolerated(0.06) benign(0.115) TCGA-06-5416-01 19 49055508 49055508 C T SULT2B1 5'UTR 0.16 TCGA-06-5416-01 19 49131792 49131792 G A SPHK2 Intron 0.19 TCGA-06-5416-01 19 49131878 49131878 C A SPHK2 Intron 0.33 TCGA-06-5416-01 19 49206875 49206875 G A FUT2 Missense_Mutation p.R221Q 0.44 tolerated(0.14) benign(0.009) TCGA-06-5416-01 19 49206927 49206927 C A FUT2 Silent p.I238I 0.49 TCGA-06-5416-01 19 49254423 49254423 G A FUT1 Missense_Mutation p.S39L 0.20 tolerated_low_confidence(0.1) benign(0.016) TCGA-06-5416-01 19 49259613 49259613 C T FGF21 Silent p.F40F 0.43 TCGA-06-5416-01 19 49261503 49261503 C A FGF21 3'UTR 0.21 TCGA-06-5416-01 19 4929257 4929257 C T MIR4747 5'Flank 0.12 TCGA-06-5416-01 19 49344568 49344568 C A PLEKHA4 Splice_Site p.X582_splice 0.14 TCGA-06-5416-01 19 49376594 49376594 G A PPP1R15A Missense_Mutation p.R35H 0.46 tolerated(0.33) probably_damaging(0.964) TCGA-06-5416-01 19 49384379 49384379 T C TULP2 Silent p.E484E 0.30 TCGA-06-5416-01 19 49398637 49398637 G A TULP2 Missense_Mutation p.P112L 0.25 tolerated(0.07) benign(0.003) TCGA-06-5416-01 19 49438292 49438292 G A DHDH Silent p.A42A 0.25 TCGA-06-5416-01 19 49442793 49442793 G A DHDH Missense_Mutation p.A152T 0.46 deleterious(0.03) benign(0.423) TCGA-06-5416-01 19 49448193 49448193 T C DHDH 3'UTR 0.52 TCGA-06-5416-01 19 49448200 49448200 G A DHDH 3'UTR 0.46 TCGA-06-5416-01 19 49464422 49464422 A G BAX 3'UTR 0.21 TCGA-06-5416-01 19 49514485 49514485 G A RUVBL2 Missense_Mutation p.E307K 0.21 deleterious(0) possibly_damaging(0.721) TCGA-06-5416-01 19 49517835 49517835 G T RUVBL2 Missense_Mutation p.D366Y 0.46 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 19 49518864 49518864 C A RUVBL2 Silent p.V429V 0.24 TCGA-06-5416-01 19 49519129 49519129 T A RUVBL2 3'UTR 0.44 TCGA-06-5416-01 19 49535266 49535266 C T CGB2 5'UTR 0.20 TCGA-06-5416-01 19 49535326 49535326 C T CGB2 5'UTR 0.40 TCGA-06-5416-01 19 49564675 49564675 G A NTF4 Nonsense_Mutation p.R194* 0.40 TCGA-06-5416-01 19 49574061 49574061 G A KCNA7 Silent p.F210F 0.18 TCGA-06-5416-01 19 49621683 49621683 T C LIN7B 3'UTR 0.44 TCGA-06-5416-01 19 49700088 49700088 G A TRPM4 Missense_Mutation p.D868N 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-06-5416-01 19 49797112 49797112 G T SLC6A16 Missense_Mutation p.F530L 0.22 tolerated(0.55) benign(0.135) TCGA-06-5416-01 19 49838797 49838797 G T CD37 5'UTR 0.20 TCGA-06-5416-01 19 49850557 49850557 C T TEAD2 Missense_Mutation p.E271K 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 49850602 49850602 C T TEAD2 Missense_Mutation p.V256M 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 49878344 49878344 T C DKKL1 3'UTR 0.22 TCGA-06-5416-01 19 49878359 49878359 C A DKKL1 3'UTR 0.46 TCGA-06-5416-01 19 49910870 49910870 G A CCDC155 Missense_Mutation p.R312H 0.16 deleterious(0.02) benign(0.109) TCGA-06-5416-01 19 49933845 49933845 C T SLC17A7 Silent p.P538P 0.33 TCGA-06-5416-01 19 49938055 49938055 G A SLC17A7 Silent p.I173I 0.23 TCGA-06-5416-01 19 50017629 50017629 C T FCGRT Missense_Mutation p.R163W 0.54 deleterious(0) possibly_damaging(0.9) TCGA-06-5416-01 19 50149449 50149449 A G SCAF1 Missense_Mutation p.D84G 0.25 unknown(0) TCGA-06-5416-01 19 50154228 50154228 C A SCAF1 Silent p.S194S 0.39 TCGA-06-5416-01 19 50156124 50156124 T C SCAF1 Silent p.C826C 0.49 TCGA-06-5416-01 19 50213645 50213645 C T CPT1C Silent p.V545V 0.27 TCGA-06-5416-01 19 50247518 50247518 G A TSKS Missense_Mutation p.S444F 0.20 deleterious(0.04) benign(0.223) TCGA-06-5416-01 19 50296295 50296295 G T AP2A1 Missense_Mutation p.K217N 0.28 tolerated(0.11) benign(0.283) TCGA-06-5416-01 19 50309144 50309144 G A AP2A1 Silent p.A889A 0.19 TCGA-06-5416-01 19 50310365 50310365 G A FUZ 3'UTR 0.39 TCGA-06-5416-01 19 50314677 50314677 G A FUZ Silent p.I145I 0.23 TCGA-06-5416-01 19 50358287 50358287 G T PTOV1 Missense_Mutation p.D171Y 0.55 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 50365492 50365492 G A PNKP Missense_Mutation p.A359V 0.17 tolerated(0.12) benign(0.001) TCGA-06-5416-01 19 50453220 50453220 G T SIGLEC11 3'UTR 0.19 TCGA-06-5416-01 19 50463927 50463927 G A SIGLEC11 Silent p.C114C 0.22 TCGA-06-5416-01 19 504854 504854 G A MADCAM1 Silent p.R346R 0.58 TCGA-06-5416-01 19 50547982 50547982 C A ZNF473 Missense_Mutation p.F94L 0.16 tolerated(1) benign(0) TCGA-06-5416-01 19 50548919 50548919 G A ZNF473 Missense_Mutation p.E407K 0.21 tolerated(0.11) possibly_damaging(0.602) TCGA-06-5416-01 19 50752925 50752925 C T MYH14 Missense_Mutation p.L501F 0.45 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 19 50794294 50794294 C T MYH14 Missense_Mutation p.R1706C 0.17 deleterious(0) probably_damaging(0.91) TCGA-06-5416-01 19 50827058 50827058 G A KCNC3 Silent p.I384I 0.21 TCGA-06-5416-01 19 50840349 50840349 C T NAPSB RNA 0.26 TCGA-06-5416-01 19 50865441 50865441 C T NAPSA Silent p.S71S 0.47 TCGA-06-5416-01 19 50885741 50885741 T C NR1H2 Missense_Mutation p.M422T 0.23 tolerated(0.28) possibly_damaging(0.688) TCGA-06-5416-01 19 50902210 50902210 C T POLD1 Silent p.F34F 0.25 TCGA-06-5416-01 19 50957312 50957312 G T MYBPC2 Missense_Mutation p.E595D 0.17 deleterious(0.02) benign(0.232) TCGA-06-5416-01 19 51015704 51015704 C T ASPDH Missense_Mutation p.R189Q 0.60 deleterious(0.03) probably_damaging(0.91) TCGA-06-5416-01 19 51020954 51020954 C T LRRC4B Silent p.A672A 0.26 TCGA-06-5416-01 19 51051844 51051844 G A LRRC4B Silent p.I84I 0.19 TCGA-06-5416-01 19 51132646 51132646 C T SYT3 Missense_Mutation p.D396N 0.48 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 19 51140674 51140674 C T SYT3 5'UTR 0.41 TCGA-06-5416-01 19 51297073 51297073 G A ACPT Missense_Mutation p.G260R 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 51297159 51297159 G A ACPT Missense_Mutation p.A265T 0.19 tolerated(0.13) probably_damaging(0.995) TCGA-06-5416-01 19 51297190 51297190 G A ACPT Missense_Mutation p.R275H 0.43 tolerated(0.2) benign(0.01) TCGA-06-5416-01 19 51325055 51325055 G A KLK1 Missense_Mutation p.A40V 0.50 tolerated(1) benign(0.009) TCGA-06-5416-01 19 51329907 51329907 G A KLK15 Silent p.G196G 0.18 TCGA-06-5416-01 19 51330315 51330315 C T KLK15 Silent p.A100A 0.25 TCGA-06-5416-01 19 51361728 51361728 G A KLK3 Silent p.K169K 0.17 TCGA-06-5416-01 19 51410255 51410255 G A KLK4 Missense_Mutation p.P234S 0.04 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 51411840 51411840 G A KLK4 Missense_Mutation p.A157V 0.19 tolerated(0.49) benign(0.001) TCGA-06-5416-01 19 51411897 51411897 G T KLK4 Missense_Mutation p.A138D 0.35 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 19 5144150 5144150 C T KDM4B Missense_Mutation p.S908L 0.17 benign(0.002) TCGA-06-5416-01 19 51451929 51451929 G A KLK5 Silent p.C231C 0.46 TCGA-06-5416-01 19 51453250 51453250 G A KLK5 Missense_Mutation p.R66C 0.43 deleterious(0.01) possibly_damaging(0.853) TCGA-06-5416-01 19 51503409 51503409 G A KLK8 Silent p.S157S 0.51 TCGA-06-5416-01 19 51507001 51507001 G A KLK9 Missense_Mutation p.L188F 0.42 deleterious(0.02) possibly_damaging(0.879) TCGA-06-5416-01 19 51518676 51518676 G A KLK10 Silent p.C225C 0.21 TCGA-06-5416-01 19 51519383 51519383 T C KLK10 Missense_Mutation p.H100R 0.47 deleterious(0) benign(0.055) TCGA-06-5416-01 19 51520434 51520434 G T KLK10 Silent p.L67L 0.19 TCGA-06-5416-01 19 51527611 51527611 G T KLK11 Intron 0.50 TCGA-06-5416-01 19 51530752 51530752 G A KLK11 Missense_Mutation p.R8W 0.25 deleterious_low_confidence(0.01) benign(0.037) TCGA-06-5416-01 19 51535220 51535220 G A KLK12 Silent p.S123S 0.22 TCGA-06-5416-01 19 51582707 51582707 G A KLK14 Silent p.I171I 0.28 TCGA-06-5416-01 19 51742897 51742897 C A CD33 Missense_Mutation p.P350H 0.18 deleterious(0.01) benign(0.039) TCGA-06-5416-01 19 51742928 51742928 G T CD33 Missense_Mutation p.E360D 0.13 deleterious(0.03) benign(0.039) TCGA-06-5416-01 19 51770657 51770657 G A SIGLECL1 Silent p.K147K 0.25 TCGA-06-5416-01 19 51883492 51883492 C T LIM2 Missense_Mutation p.R204Q 0.37 tolerated(0.27) possibly_damaging(0.905) TCGA-06-5416-01 19 51955797 51955797 G A SIGLEC8 Missense_Mutation p.H446Y 0.49 tolerated(0.11) benign(0.043) TCGA-06-5416-01 19 51983916 51983916 G A CEACAM18 Missense_Mutation p.G189S 0.10 deleterious(0.02) probably_damaging(0.997) TCGA-06-5416-01 19 51984836 51984836 G A CEACAM18 Missense_Mutation p.R258H 0.22 deleterious(0.02) benign(0.369) TCGA-06-5416-01 19 52004580 52004580 C A SIGLEC12 Missense_Mutation p.Q136H 0.44 tolerated(0.12) benign(0.002) TCGA-06-5416-01 19 52004944 52004944 C A SIGLEC12 Missense_Mutation p.R15I 0.44 tolerated(0.15) benign(0.308) TCGA-06-5416-01 19 52091635 52091635 C T ZNF175 Missense_Mutation p.S684L 0.25 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 19 5210796 5210796 G A PTPRS Missense_Mutation p.A1752V 0.38 deleterious(0) benign(0.433) TCGA-06-5416-01 19 5212225 5212225 G A PTPRS Silent p.I1602I 0.32 TCGA-06-5416-01 19 52131176 52131176 C T SIGLEC5 Missense_Mutation p.R303Q 0.43 tolerated(0.51) benign(0.107) TCGA-06-5416-01 19 52132687 52132687 G C SIGLEC5 Silent p.G208G 0.17 TCGA-06-5416-01 19 52133111 52133111 C A SIGLEC5 Missense_Mutation p.Q132H 0.59 tolerated(0.12) benign(0.006) TCGA-06-5416-01 19 52146831 52146831 G A SIGLEC14 Silent p.G369G 0.25 TCGA-06-5416-01 19 52272313 52272313 G A FPR2 Silent p.Q134Q 0.22 TCGA-06-5416-01 19 5231532 5231532 G A PTPRS Silent p.N648N 0.18 TCGA-06-5416-01 19 5231570 5231570 A C PTPRS Missense_Mutation p.L636V 0.43 tolerated(0.35) probably_damaging(0.973) TCGA-06-5416-01 19 52327115 52327115 C T FPR3 Silent p.V38V 0.21 TCGA-06-5416-01 19 52327722 52327722 C T FPR3 Missense_Mutation p.R241C 0.42 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 19 52376542 52376542 C A ZNF577 Missense_Mutation p.R234I 0.51 deleterious(0.03) possibly_damaging(0.82) TCGA-06-5416-01 19 52380605 52380605 C T ZNF577 Silent p.S71S 0.39 TCGA-06-5416-01 19 5244481 5244481 G A PTPRS Missense_Mutation p.A334V 0.44 tolerated(0.08) probably_damaging(0.964) TCGA-06-5416-01 19 52448395 52448395 G A ZNF613 Missense_Mutation p.R420H 0.45 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 19 52497394 52497394 C T ZNF615 Missense_Mutation p.G323E 0.19 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 19 52569285 52569285 C T ZNF841 Missense_Mutation p.R617Q 0.28 tolerated(0.06) probably_damaging(0.971) TCGA-06-5416-01 19 52658359 52658359 C A ZNF836 Missense_Mutation p.E859D 0.49 deleterious(0.01) probably_damaging(0.911) TCGA-06-5416-01 19 52658714 52658714 T G ZNF836 Missense_Mutation p.Q741P 0.50 deleterious(0.01) possibly_damaging(0.869) TCGA-06-5416-01 19 52659006 52659006 C T ZNF836 Missense_Mutation p.G644S 0.24 deleterious(0.04) probably_damaging(0.996) TCGA-06-5416-01 19 52659467 52659467 C A ZNF836 Missense_Mutation p.R490I 0.27 deleterious(0.05) probably_damaging(0.994) TCGA-06-5416-01 19 52660668 52660668 C T ZNF836 Missense_Mutation p.E90K 0.15 tolerated(0.24) possibly_damaging(0.899) TCGA-06-5416-01 19 52724238 52724238 C T PPP2R1A Missense_Mutation p.A457V 0.39 deleterious(0) benign(0.134) TCGA-06-5416-01 19 5274218 5274218 G A PTPRS Missense_Mutation p.R77C 0.36 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 52876394 52876394 G T ZNF880 Nonsense_Mutation p.E15* 0.34 TCGA-06-5416-01 19 52918787 52918787 C T ZNF528 Missense_Mutation p.L228F 0.17 tolerated(0.05) probably_damaging(0.999) TCGA-06-5416-01 19 52919731 52919731 T G ZNF528 Missense_Mutation p.I542M 0.39 deleterious(0) possibly_damaging(0.844) TCGA-06-5416-01 19 52919780 52919780 C T ZNF528 Nonsense_Mutation p.R559* 0.43 TCGA-06-5416-01 19 52941029 52941029 A - ZNF534 Frame_Shift_Del p.N120Ifs*5 0.20 TCGA-06-5416-01 19 52941766 52941766 G T ZNF534 Missense_Mutation p.E364D 0.18 deleterious(0) benign(0.129) TCGA-06-5416-01 19 53014056 53014056 G A ZNF578 Missense_Mutation p.R141Q 0.18 tolerated(1) benign(0.005) TCGA-06-5416-01 19 53056663 53056663 C A ZNF808 Missense_Mutation p.P165H 0.04 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 19 53057590 53057590 G T ZNF808 Missense_Mutation p.R474I 0.40 deleterious(0.01) possibly_damaging(0.505) TCGA-06-5416-01 19 53057945 53057945 G T ZNF808 Missense_Mutation p.E592D 0.16 deleterious(0) possibly_damaging(0.492) TCGA-06-5416-01 19 53085874 53085874 A G ZNF701 Missense_Mutation p.I254V 0.36 tolerated(0.21) probably_damaging(0.949) TCGA-06-5416-01 19 53086354 53086354 C A ZNF701 Missense_Mutation p.H414N 0.19 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 19 53116456 53116456 C A ZNF83 Missense_Mutation p.E454D 0.46 deleterious(0.01) benign(0.097) TCGA-06-5416-01 19 53117044 53117044 C A ZNF83 Missense_Mutation p.E258D 0.30 deleterious(0.01) probably_damaging(0.938) TCGA-06-5416-01 19 53122285 53122285 C A ZNF83 Intron 0.38 TCGA-06-5416-01 19 53208283 53208283 C A ZNF611 Missense_Mutation p.E675D 0.21 tolerated(0.07) probably_damaging(0.948) TCGA-06-5416-01 19 53271010 53271010 C T ZNF600 5'UTR 0.41 TCGA-06-5416-01 19 53302698 53302698 C A ZNF28 3'UTR 0.22 TCGA-06-5416-01 19 53303448 53303448 C T ZNF28 Silent p.P550P 0.22 TCGA-06-5416-01 19 53303918 53303918 G A ZNF28 Missense_Mutation p.R394C 0.22 tolerated(0.18) benign(0.08) TCGA-06-5416-01 19 53343283 53343283 G A ZNF468 3'UTR 0.54 TCGA-06-5416-01 19 53384109 53384109 G A ZNF320 Missense_Mutation p.R424C 0.36 tolerated(0.12) benign(0.025) TCGA-06-5416-01 19 53384139 53384139 C T ZNF320 Missense_Mutation p.E414K 0.28 tolerated(1) benign(0) TCGA-06-5416-01 19 53384796 53384796 C T ZNF320 Missense_Mutation p.D195N 0.36 deleterious(0.02) possibly_damaging(0.679) TCGA-06-5416-01 19 53418545 53418545 C A ZNF888 RNA 0.35 TCGA-06-5416-01 19 53418572 53418572 G A ZNF888 RNA 0.16 TCGA-06-5416-01 19 53453638 53453638 G A ZNF816 Missense_Mutation p.R464W 0.42 tolerated(0.16) benign(0.008) TCGA-06-5416-01 19 53459330 53459330 C T ZNF816 Missense_Mutation p.E5K 0.20 tolerated(0.18) benign(0.002) TCGA-06-5416-01 19 53571780 53571780 G A ZNF160 Silent p.V669V 0.39 TCGA-06-5416-01 19 53572300 53572300 A C ZNF160 Missense_Mutation p.L496R 0.15 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 19 53572562 53572562 G A ZNF160 Missense_Mutation p.R409C 0.23 tolerated(0.08) probably_damaging(0.977) TCGA-06-5416-01 19 53572978 53572978 G A ZNF160 Missense_Mutation p.S270L 0.51 deleterious(0.05) possibly_damaging(0.602) TCGA-06-5416-01 19 53668982 53668982 C A ZNF665 Missense_Mutation p.R254I 0.44 deleterious(0.03) benign(0.098) TCGA-06-5416-01 19 53740197 53740197 G A ZNF677 3'UTR 0.43 TCGA-06-5416-01 19 53762566 53762566 C T VN1R2 Missense_Mutation p.A313V 0.42 deleterious(0.02) probably_damaging(0.989) TCGA-06-5416-01 19 53770333 53770333 G A VN1R4 Missense_Mutation p.L196F 0.13 tolerated(0.07) benign(0.333) TCGA-06-5416-01 19 53770522 53770522 G T VN1R4 Missense_Mutation p.L133M 0.10 deleterious(0.03) possibly_damaging(0.901) TCGA-06-5416-01 19 53793582 53793582 A G BIRC8 Missense_Mutation p.Y16H 0.52 deleterious(0.04) benign(0.091) TCGA-06-5416-01 19 53793680 53793680 G A BIRC8 5'UTR 0.10 TCGA-06-5416-01 19 53856171 53856171 A C ZNF845 Missense_Mutation p.K748T 0.21 deleterious(0.02) possibly_damaging(0.796) TCGA-06-5416-01 19 53879053 53879053 G T ZNF525 Nonsense_Mutation p.E16* 0.17 TCGA-06-5416-01 19 53884031 53884031 G T ZNF525 Nonsense_Mutation p.E67* 0.22 TCGA-06-5416-01 19 53885784 53885784 C T ZNF525 3'UTR 0.49 TCGA-06-5416-01 19 53886380 53886380 G T ZNF525 3'UTR 0.30 TCGA-06-5416-01 19 53911764 53911764 G A ZNF765 Missense_Mutation p.R319K 0.22 tolerated(0.28) benign(0.056) TCGA-06-5416-01 19 53989973 53989973 G A ZNF813 Missense_Mutation p.D35N 0.14 deleterious(0.02) benign(0.208) TCGA-06-5416-01 19 53995002 53995002 C T ZNF813 Missense_Mutation p.R506W 0.39 tolerated(0.16) benign(0.049) TCGA-06-5416-01 19 53996021 53996021 G A ZNF813 3'UTR 0.31 TCGA-06-5416-01 19 54081146 54081146 C T ZNF331 Silent p.C444C 0.20 TCGA-06-5416-01 19 54189728 54189728 G A MIR519C RNA 0.21 TCGA-06-5416-01 19 54191762 54191762 C T MIR1283-1 RNA 0.45 TCGA-06-5416-01 19 54264449 54264449 C T MIR516A2 RNA 0.51 TCGA-06-5416-01 19 54304538 54304538 C T NLRP12 Missense_Mutation p.G900E 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 54313092 54313092 C A NLRP12 Missense_Mutation p.Q607H 0.15 deleterious(0) possibly_damaging(0.867) TCGA-06-5416-01 19 54314013 54314013 C T NLRP12 Silent p.K300K 0.53 TCGA-06-5416-01 19 54377850 54377850 T G MYADM 3'UTR 0.29 TCGA-06-5416-01 19 54403686 54403686 G T PRKCG Nonsense_Mutation p.E463* 0.29 TCGA-06-5416-01 19 54416138 54416138 C T CACNG7 Missense_Mutation p.A18V 0.17 tolerated(1) benign(0.106) TCGA-06-5416-01 19 5456120 5456120 G T ZNRF4 Missense_Mutation p.Q206H 0.49 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 19 54609280 54609280 C T NDUFA3 Missense_Mutation p.S42F 0.16 deleterious(0) possibly_damaging(0.648) TCGA-06-5416-01 19 54664026 54664026 G T TMC4 3'UTR 0.19 TCGA-06-5416-01 19 54667617 54667617 C A TMC4 Missense_Mutation p.E378D 0.44 tolerated(0.24) benign(0.006) TCGA-06-5416-01 19 54671901 54671901 G A TMC4 Missense_Mutation p.H271Y 0.17 deleterious(0.02) possibly_damaging(0.548) TCGA-06-5416-01 19 54675837 54675837 G T TMC4 Missense_Mutation p.S38Y 0.23 deleterious(0) possibly_damaging(0.851) TCGA-06-5416-01 19 54696186 54696186 C T TSEN34 Missense_Mutation p.A236V 0.20 deleterious(0.02) probably_damaging(0.971) TCGA-06-5416-01 19 54711256 54711256 C A RPS9 Intron 0.18 TCGA-06-5416-01 19 54760029 54760029 C T LILRB5 Missense_Mutation p.A178T 0.23 deleterious(0.02) probably_damaging(0.962) TCGA-06-5416-01 19 54823273 54823273 C T LILRA5 Silent p.Q90Q 0.21 TCGA-06-5416-01 19 54926793 54926793 G A TTYH1 Missense_Mutation p.D23N 0.50 tolerated(1) benign(0.021) TCGA-06-5416-01 19 55048177 55048177 C A KIR3DX1 Silent p.I248I 0.43 TCGA-06-5416-01 19 55085775 55085775 C T LILRA2 Silent p.L26L 0.21 TCGA-06-5416-01 19 55087511 55087511 G T LILRA2 Missense_Mutation p.S397I 0.06 deleterious(0) possibly_damaging(0.633) TCGA-06-5416-01 19 55106672 55106672 C T LILRA1 Silent p.L156L 0.21 TCGA-06-5416-01 19 55147140 55147140 C T LILRB1 Intron 0.48 TCGA-06-5416-01 19 55174432 55174432 C T LILRB4 5'UTR 0.41 TCGA-06-5416-01 19 55177749 55177749 C T LILRB4 Silent p.D311D 0.22 TCGA-06-5416-01 19 55239128 55239128 C T KIR3DL3 Missense_Mutation p.S136L 0.26 tolerated(0.1) benign(0.332) TCGA-06-5416-01 19 55247574 55247574 C A KIR3DL3 3'UTR 0.20 TCGA-06-5416-01 19 55333172 55333172 C T KIR3DL1 Missense_Mutation p.R270C 0.24 tolerated(0.11) benign(0.147) TCGA-06-5416-01 19 55399452 55399452 G A FCAR Missense_Mutation p.S147N 0.44 tolerated(0.21) possibly_damaging(0.651) TCGA-06-5416-01 19 55399565 55399565 C T FCAR Missense_Mutation p.L185F 0.45 tolerated(0.7) benign(0.29) TCGA-06-5416-01 19 55441896 55441896 C A NLRP7 Missense_Mutation p.E927D 0.29 deleterious(0) benign(0.191) TCGA-06-5416-01 19 55445895 55445895 C T NLRP7 Silent p.K811K 0.21 TCGA-06-5416-01 19 55450596 55450596 C T NLRP7 Missense_Mutation p.A531T 0.18 tolerated(0.31) benign(0.025) TCGA-06-5416-01 19 55450823 55450823 C T NLRP7 Missense_Mutation p.R455H 0.42 deleterious(0.04) possibly_damaging(0.847) TCGA-06-5416-01 19 55451687 55451687 C A NLRP7 Missense_Mutation p.R167M 0.43 tolerated(0.16) benign(0.308) TCGA-06-5416-01 19 55453003 55453003 T G NLRP7 Missense_Mutation p.K26T 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 55453011 55453011 C A NLRP7 Missense_Mutation p.K23N 0.39 tolerated(0.26) benign(0.175) TCGA-06-5416-01 19 55489125 55489125 A G NLRP2 Missense_Mutation p.T111A 0.38 tolerated(0.39) benign(0.004) TCGA-06-5416-01 19 55493657 55493657 C A NLRP2 Missense_Mutation p.N197K 0.23 deleterious(0.02) possibly_damaging(0.493) TCGA-06-5416-01 19 55497571 55497571 C T NLRP2 Nonsense_Mutation p.R752* 0.45 TCGA-06-5416-01 19 55501560 55501560 C T NLRP2 Missense_Mutation p.S846L 0.43 tolerated(0.2) benign(0.069) TCGA-06-5416-01 19 55591794 55591794 T G EPS8L1 Intron 0.20 TCGA-06-5416-01 19 55623848 55623848 C A PPP1R12C Missense_Mutation p.E186D 0.23 deleterious(0.02) possibly_damaging(0.701) TCGA-06-5416-01 19 55644293 55644293 C T TNNT1 Missense_Mutation p.R276H 0.31 deleterious(0.03) probably_damaging(0.997) TCGA-06-5416-01 19 55671373 55671373 T C DNAAF3 Missense_Mutation p.T420A 0.44 tolerated(0.6) benign(0.005) TCGA-06-5416-01 19 55685920 55685920 C T SYT5 Missense_Mutation p.A309T 0.22 deleterious(0.02) benign(0.042) TCGA-06-5416-01 19 55697022 55697022 C A PTPRH Missense_Mutation p.E970D 0.22 probably_damaging(0.971) TCGA-06-5416-01 19 55743304 55743304 C T PPP6R1 Silent p.P724P 0.12 TCGA-06-5416-01 19 55800938 55800938 C A BRSK1 Missense_Mutation p.F136L 0.20 deleterious(0) benign(0.418) TCGA-06-5416-01 19 55815160 55815160 C T BRSK1 Nonsense_Mutation p.R418* 0.41 TCGA-06-5416-01 19 55853403 55853403 G T SUV420H2 Missense_Mutation p.K33N 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 55889202 55889202 G A TMEM190 Missense_Mutation p.V85I 0.17 deleterious(0) benign(0.046) TCGA-06-5416-01 19 5604942 5604942 G A SAFB2 Silent p.V434V 0.14 TCGA-06-5416-01 19 56104050 56104050 G A FIZ1 Silent p.C419C 0.17 TCGA-06-5416-01 19 56109003 56109003 G A FIZ1 Missense_Mutation p.R77W 0.51 deleterious(0) unknown(0) TCGA-06-5416-01 19 56113901 56113901 G A ZNF524 Silent p.P141P 0.58 TCGA-06-5416-01 19 56180859 56180859 G A U2AF2 Missense_Mutation p.S365N 0.37 tolerated(0.21) benign(0.027) TCGA-06-5416-01 19 56190056 56190056 G A EPN1 Silent p.E132E 0.15 TCGA-06-5416-01 19 56228222 56228222 G A NLRP9 Silent p.I734I 0.49 TCGA-06-5416-01 19 56243688 56243688 G T NLRP9 Silent p.I503I 0.42 TCGA-06-5416-01 19 56244449 56244449 G A NLRP9 Missense_Mutation p.R250W 0.51 deleterious(0.01) possibly_damaging(0.906) TCGA-06-5416-01 19 56244591 56244591 G T NLRP9 Silent p.L202L 0.39 TCGA-06-5416-01 19 56300305 56300305 G T NLRP11 Missense_Mutation p.S908Y 0.18 tolerated(0.7) benign(0.014) TCGA-06-5416-01 19 56313023 56313023 T C NLRP11 Missense_Mutation p.I696V 0.50 tolerated(0.11) benign(0) TCGA-06-5416-01 19 56320925 56320925 G A NLRP11 Missense_Mutation p.R351W 0.26 tolerated(0.16) possibly_damaging(0.893) TCGA-06-5416-01 19 56321017 56321017 G A NLRP11 Missense_Mutation p.S320L 0.21 tolerated(0.52) benign(0.002) TCGA-06-5416-01 19 56369459 56369459 G A NLRP4 Missense_Mutation p.E234K 0.66 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 56369885 56369885 G A NLRP4 Missense_Mutation p.V376I 0.25 tolerated(1) benign(0) TCGA-06-5416-01 19 56369938 56369938 G A NLRP4 Silent p.Q393Q 0.20 TCGA-06-5416-01 19 56379189 56379189 G A NLRP4 Silent p.V767V 0.25 TCGA-06-5416-01 19 56388517 56388517 G A NLRP4 Missense_Mutation p.R894H 0.22 tolerated(1) benign(0.003) TCGA-06-5416-01 19 56436388 56436388 G A NLRP13 Silent p.T111T 0.18 TCGA-06-5416-01 19 56459333 56459333 C A NLRP8 Missense_Mutation p.S22Y 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.608) TCGA-06-5416-01 19 56459557 56459557 G A NLRP8 Missense_Mutation p.A97T 0.26 deleterious(0.03) possibly_damaging(0.879) TCGA-06-5416-01 19 56465889 56465889 G A NLRP8 Silent p.S155S 0.26 TCGA-06-5416-01 19 56466053 56466053 G A NLRP8 Missense_Mutation p.G210E 0.47 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 19 56490816 56490816 G A NLRP8 Missense_Mutation p.R978H 0.47 tolerated(0.05) benign(0.132) TCGA-06-5416-01 19 56515263 56515263 G A NLRP5 Missense_Mutation p.E82K 0.21 tolerated(0.28) benign(0.016) TCGA-06-5416-01 19 56515425 56515425 C T NLRP5 Nonsense_Mutation p.R136* 0.18 TCGA-06-5416-01 19 56538560 56538560 G A NLRP5 Missense_Mutation p.V321I 0.28 tolerated(0.13) benign(0.027) TCGA-06-5416-01 19 56538867 56538867 C T NLRP5 Missense_Mutation p.S423F 0.34 deleterious(0.03) benign(0.432) TCGA-06-5416-01 19 56539070 56539070 G A NLRP5 Missense_Mutation p.V491I 0.41 tolerated(0.43) benign(0) TCGA-06-5416-01 19 56539282 56539282 C T NLRP5 Silent p.L561L 0.20 TCGA-06-5416-01 19 56544040 56544040 C T NLRP5 Silent p.H780H 0.19 TCGA-06-5416-01 19 5667835 5667835 C T SAFB Silent p.G854G 0.49 TCGA-06-5416-01 19 56733204 56733204 G A ZSCAN5A Missense_Mutation p.P411S 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 19 56733273 56733273 G T ZSCAN5A Missense_Mutation p.L388I 0.36 tolerated(0.55) benign(0.214) TCGA-06-5416-01 19 56736045 56736045 C A ZSCAN5A Missense_Mutation p.R124I 0.14 deleterious(0.01) probably_damaging(0.938) TCGA-06-5416-01 19 56918424 56918424 C T ZNF583 5'UTR 0.30 TCGA-06-5416-01 19 56934581 56934581 A G ZNF583 Missense_Mutation p.K185R 0.24 tolerated(0.1) benign(0.106) TCGA-06-5416-01 19 5694550 5694550 G A LONP1 Missense_Mutation p.S723L 0.15 tolerated(0.06) benign(0.002) TCGA-06-5416-01 19 5694889 5694889 G A LONP1 Silent p.R679R 0.22 TCGA-06-5416-01 19 56952409 56952409 G A ZNF667 3'UTR 0.20 TCGA-06-5416-01 19 56981362 56981362 A G ZNF667 Intron 0.46 TCGA-06-5416-01 19 57036199 57036199 A G ZNF471 Missense_Mutation p.T255A 0.17 tolerated(0.2) benign(0.013) TCGA-06-5416-01 19 57036669 57036669 C A ZNF471 Silent p.T411T 0.19 TCGA-06-5416-01 19 57036896 57036896 A G ZNF471 Missense_Mutation p.Y487C 0.46 deleterious(0) possibly_damaging(0.845) TCGA-06-5416-01 19 57066459 57066459 C T ZFP28 Missense_Mutation p.R769C 0.25 tolerated(0.11) probably_damaging(1) TCGA-06-5416-01 19 57088853 57088853 C T ZNF470 Silent p.C352C 0.20 TCGA-06-5416-01 19 57175086 57175086 C A ZNF835 Missense_Mutation p.R494M 0.16 deleterious(0) possibly_damaging(0.814) TCGA-06-5416-01 19 57175471 57175471 C T ZNF835 Missense_Mutation p.D366N 0.29 deleterious(0.03) possibly_damaging(0.892) TCGA-06-5416-01 19 57176227 57176227 C T ZNF835 Missense_Mutation p.D114N 0.09 deleterious(0.02) benign(0.254) TCGA-06-5416-01 19 57176491 57176491 C T ZNF835 Missense_Mutation p.D26N 0.43 tolerated(0.41) benign(0.011) TCGA-06-5416-01 19 57325327 57325327 C T PEG3 Missense_Mutation p.D1495N 0.20 deleterious(0.04) benign(0.03) TCGA-06-5416-01 19 57326949 57326949 G T PEG3 Missense_Mutation p.S954Y 0.06 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 19 57328348 57328348 G T PEG3 Missense_Mutation p.H488N 0.05 deleterious(0.01) possibly_damaging(0.754) TCGA-06-5416-01 19 57335876 57335876 G A PEG3 Missense_Mutation p.R50W 0.21 deleterious(0.03) benign(0.003) TCGA-06-5416-01 19 57642143 57642143 C T USP29 Silent p.F700F 0.27 TCGA-06-5416-01 19 57646765 57646765 T G ZIM3 Missense_Mutation p.K314Q 0.46 deleterious(0) probably_damaging(0.962) TCGA-06-5416-01 19 57723407 57723407 C A ZNF264 Silent p.S314S 0.17 TCGA-06-5416-01 19 57723721 57723721 G A ZNF264 Missense_Mutation p.R419Q 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 19 57723825 57723825 C T ZNF264 Missense_Mutation p.P454S 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 5772829 5772829 C T CATSPERD Silent p.I598I 0.45 TCGA-06-5416-01 19 57743922 57743922 C A AURKC Silent p.I103I 0.21 TCGA-06-5416-01 19 57765769 57765769 C T ZNF805 Nonsense_Mutation p.R528* 0.27 TCGA-06-5416-01 19 5778558 5778558 G T CATSPERD Missense_Mutation p.K756N 0.35 tolerated(0.08) benign(0.025) TCGA-06-5416-01 19 57803134 57803134 C T ZNF460 Nonsense_Mutation p.R409* 0.23 TCGA-06-5416-01 19 57803361 57803361 C T ZNF460 Silent p.A484A 0.18 TCGA-06-5416-01 19 57839408 57839408 G A ZNF543 Missense_Mutation p.R193H 0.21 tolerated(1) benign(0.001) TCGA-06-5416-01 19 57889759 57889759 C T ZNF547 3'UTR 0.17 TCGA-06-5416-01 19 5790185 5790185 G A DUS3L Missense_Mutation p.T87M 0.33 tolerated(0.1) benign(0.238) TCGA-06-5416-01 19 57910942 57910942 C A ZNF548 Missense_Mutation p.F441L 0.50 tolerated(0.15) possibly_damaging(0.546) TCGA-06-5416-01 19 57956376 57956376 C A ZNF749 Missense_Mutation p.F620L 0.23 tolerated(0.54) possibly_damaging(0.787) TCGA-06-5416-01 19 57967638 57967638 T G VN1R1 Missense_Mutation p.I73L 0.17 tolerated(0.71) benign(0.017) TCGA-06-5416-01 19 57985277 57985277 C A ZNF772 Missense_Mutation p.D279Y 0.16 tolerated(0.35) probably_damaging(0.998) TCGA-06-5416-01 19 57985282 57985282 C T ZNF772 Missense_Mutation p.R277H 0.17 tolerated(0.21) probably_damaging(0.99) TCGA-06-5416-01 19 58049397 58049397 G A ZNF549 Missense_Mutation p.R342H 0.44 tolerated(0.11) possibly_damaging(0.633) TCGA-06-5416-01 19 58049504 58049504 C T ZNF549 Nonsense_Mutation p.R378* 0.06 TCGA-06-5416-01 19 58058258 58058258 C A ZNF550 3'UTR 0.45 TCGA-06-5416-01 19 58084151 58084151 C T ZNF416 Missense_Mutation p.R374K 0.41 tolerated(0.05) probably_damaging(1) TCGA-06-5416-01 19 58101430 58101430 C A ZIK1 Missense_Mutation p.S84Y 0.31 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 19 58102389 58102389 G T ZIK1 Nonsense_Mutation p.E404* 0.21 TCGA-06-5416-01 19 58115673 58115673 C G ZNF530 Missense_Mutation p.A20G 0.21 tolerated(0.06) possibly_damaging(0.822) TCGA-06-5416-01 19 58132940 58132940 C T ZNF134 3'UTR 0.22 TCGA-06-5416-01 19 58152673 58152673 T G ZNF211 Missense_Mutation p.I338M 0.49 tolerated(0.12) probably_damaging(0.93) TCGA-06-5416-01 19 58198232 58198232 G A ZNF551 Missense_Mutation p.E197K 0.22 tolerated(0.07) benign(0.001) TCGA-06-5416-01 19 58199467 58199467 T C ZNF551 Silent p.G608G 0.22 TCGA-06-5416-01 19 58264815 58264815 G A AC003006.7 Missense_Mutation p.G106E 0.37 tolerated(0.36) benign(0.043) TCGA-06-5416-01 19 58265271 58265271 G A ZNF776 Missense_Mutation p.R258H 0.24 tolerated(1) benign(0) TCGA-06-5416-01 19 58291145 58291145 G T ZNF586 Missense_Mutation p.G397V 0.19 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 19 5831621 5831621 G A FUT6 Missense_Mutation p.R320C 0.20 deleterious(0) benign(0.103) TCGA-06-5416-01 19 5832268 5832268 G A FUT6 Missense_Mutation p.A104V 0.14 deleterious(0.02) possibly_damaging(0.647) TCGA-06-5416-01 19 58352342 58352342 C A ZNF587B Silent p.I100I 0.16 TCGA-06-5416-01 19 58371650 58371650 G A ZNF587 3'UTR 0.11 TCGA-06-5416-01 19 58385595 58385595 G A ZNF814 Missense_Mutation p.S388L 0.21 deleterious(0.02) possibly_damaging(0.794) TCGA-06-5416-01 19 58437514 58437514 C A ZNF418 3'UTR 0.45 TCGA-06-5416-01 19 58437692 58437692 G A ZNF418 Silent p.Y619Y 0.18 TCGA-06-5416-01 19 58472885 58472885 C T C19orf18 Missense_Mutation p.E136K 0.45 deleterious(0.03) possibly_damaging(0.81) TCGA-06-5416-01 19 58491188 58491188 T G ZNF606 Missense_Mutation p.N287T 0.25 deleterious(0.05) benign(0.014) TCGA-06-5416-01 19 58491353 58491353 G T ZNF606 Missense_Mutation p.S232Y 0.20 tolerated(0.09) possibly_damaging(0.853) TCGA-06-5416-01 19 58549587 58549587 G A ZSCAN1 Intron 0.39 TCGA-06-5416-01 19 58574833 58574833 G T ZNF135 Silent p.P72P 0.42 TCGA-06-5416-01 19 58601483 58601483 C T ZSCAN18 Missense_Mutation p.R107H 0.18 tolerated(0.38) benign(0.227) TCGA-06-5416-01 19 58619339 58619339 G A ZSCAN18 Intron 0.17 TCGA-06-5416-01 19 58619404 58619404 T C ZSCAN18 Intron 0.21 TCGA-06-5416-01 19 5867136 5867136 C A FUT5 Missense_Mutation p.A201S 0.11 tolerated(0.22) possibly_damaging(0.461) TCGA-06-5416-01 19 58773135 58773135 C A ZNF544 Missense_Mutation p.S388Y 0.17 deleterious(0.03) possibly_damaging(0.681) TCGA-06-5416-01 19 58850271 58850271 A G ZSCAN22 Missense_Mutation p.Y352C 0.22 tolerated(0.09) possibly_damaging(0.881) TCGA-06-5416-01 19 58868400 58868400 C T ZNF497 Missense_Mutation p.R201Q 0.19 tolerated(1) benign(0.004) TCGA-06-5416-01 19 58904525 58904525 C T RPS5 Silent p.F97F 0.51 TCGA-06-5416-01 19 58904526 58904526 G A RPS5 Missense_Mutation p.E98K 0.14 deleterious(0.02) probably_damaging(0.929) TCGA-06-5416-01 19 58904797 58904797 C T RPS5 Silent p.R130R 0.14 TCGA-06-5416-01 19 58906159 58906159 G A RPS5 3'UTR 0.41 TCGA-06-5416-01 19 58927279 58927279 T C ZNF584 Intron 0.46 TCGA-06-5416-01 19 58946306 58946306 G A ZNF132 Missense_Mutation p.P169S 0.40 tolerated(0.43) benign(0.02) TCGA-06-5416-01 19 59022949 59022949 C T SLC27A5 Missense_Mutation p.R125Q 0.30 tolerated(0.32) benign(0.007) TCGA-06-5416-01 19 59022963 59022963 G A SLC27A5 Silent p.F120F 0.40 TCGA-06-5416-01 19 59058999 59058999 G A TRIM28 Missense_Mutation p.R253H 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 19 59061337 59061337 G A TRIM28 Missense_Mutation p.A710T 0.19 deleterious(0.03) benign(0.131) TCGA-06-5416-01 19 59061385 59061385 G A TRIM28 Missense_Mutation p.D726N 0.44 tolerated(0.74) benign(0.002) TCGA-06-5416-01 19 59063771 59063771 C T CHMP2A Missense_Mutation p.R68H 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 59074477 59074477 G A MZF1 Silent p.C389C 0.45 TCGA-06-5416-01 19 59074822 59074822 G A MZF1 Silent p.S274S 0.28 TCGA-06-5416-01 19 59082390 59082390 G A MZF1 Missense_Mutation p.R123C 0.48 tolerated(0.08) benign(0.008) TCGA-06-5416-01 19 5914424 5914424 G A CAPS Missense_Mutation p.A3T 0.36 tolerated(0.47) benign(0.001) TCGA-06-5416-01 19 5925723 5925723 G A RANBP3 Missense_Mutation p.A280V 0.16 tolerated(0.1) benign(0.009) TCGA-06-5416-01 19 5931476 5931476 G A RANBP3 Missense_Mutation p.S211F 0.16 tolerated(0.18) benign(0.014) TCGA-06-5416-01 19 6016167 6016167 G A RFX2 Missense_Mutation p.A238V 0.60 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 19 603881 603881 C T HCN2 Missense_Mutation p.R324C 0.62 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 19 6040204 6040204 G A RFX2 Silent p.S103S 0.38 TCGA-06-5416-01 19 6040250 6040250 C T RFX2 Missense_Mutation p.R88Q 0.16 tolerated(0.07) possibly_damaging(0.631) TCGA-06-5416-01 19 608129 608129 G A HCN2 Missense_Mutation p.A462T 0.21 deleterious(0.04) possibly_damaging(0.701) TCGA-06-5416-01 19 613380 613380 C T HCN2 Missense_Mutation p.R573C 0.14 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 19 6190616 6190616 G T ACSBG2 Missense_Mutation p.R650I 0.14 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 19 619291 619291 G A POLRMT Silent p.F1024F 0.41 TCGA-06-5416-01 19 6230694 6230694 C T MLLT1 Missense_Mutation p.D103N 0.17 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 19 623583 623583 C T POLRMT Silent p.P387P 0.24 TCGA-06-5416-01 19 6307217 6307217 A G ACER1 Silent p.R191R 0.17 TCGA-06-5416-01 19 6312484 6312484 G A ACER1 Silent p.F40F 0.17 TCGA-06-5416-01 19 6380128 6380128 C T GTF2F1 3'UTR 0.24 TCGA-06-5416-01 19 6380696 6380696 G A GTF2F1 Missense_Mutation p.R413W 0.40 deleterious(0) possibly_damaging(0.787) TCGA-06-5416-01 19 6418542 6418542 C T KHSRP Silent p.T277T 0.43 TCGA-06-5416-01 19 6426431 6426431 T C SLC25A41 Missense_Mutation p.Y361C 0.30 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 6456477 6456477 G A SLC25A23 Missense_Mutation p.S146L 0.47 deleterious(0) benign(0.001) TCGA-06-5416-01 19 6468049 6468049 T G DENND1C Missense_Mutation p.Q624H 0.21 tolerated_low_confidence(0.18) benign(0.003) TCGA-06-5416-01 19 6475903 6475903 G A DENND1C Missense_Mutation p.R242C 0.53 tolerated(0.09) probably_damaging(0.932) TCGA-06-5416-01 19 651725 651725 C T RNF126 Missense_Mutation p.S110N 0.25 tolerated(0.58) benign(0.005) TCGA-06-5416-01 19 6664991 6664991 G A TNFSF14 Silent p.R223R 0.36 TCGA-06-5416-01 19 6665125 6665125 G A TNFSF14 Silent p.L179L 0.56 TCGA-06-5416-01 19 6665284 6665284 G A TNFSF14 Missense_Mutation p.L126F 0.36 tolerated(0.19) benign(0.068) TCGA-06-5416-01 19 6678236 6678236 C T C3 Missense_Mutation p.A1593T 0.15 tolerated(0.36) benign(0.177) TCGA-06-5416-01 19 6684580 6684580 G A C3 Missense_Mutation p.P1371S 0.37 tolerated(0.1) benign(0.002) TCGA-06-5416-01 19 6693474 6693474 C A C3 Missense_Mutation p.R1060I 0.46 deleterious(0) possibly_damaging(0.724) TCGA-06-5416-01 19 6744568 6744568 C A TRIP10 Missense_Mutation p.L216I 0.36 tolerated(0.42) possibly_damaging(0.906) TCGA-06-5416-01 19 6746538 6746538 C T TRIP10 Missense_Mutation p.R354C 0.31 deleterious(0.02) probably_damaging(0.931) TCGA-06-5416-01 19 6750590 6750590 G A TRIP10 Missense_Mutation p.E479K 0.18 deleterious(0.03) benign(0.388) TCGA-06-5416-01 19 6754258 6754258 G A SH2D3A Intron 0.50 TCGA-06-5416-01 19 6754940 6754940 G A SH2D3A Missense_Mutation p.R295W 0.43 deleterious(0) benign(0.243) TCGA-06-5416-01 19 6833931 6833931 C T VAV1 Missense_Mutation p.R582C 0.52 tolerated(0.08) possibly_damaging(0.489) TCGA-06-5416-01 19 6837006 6837006 C A VAV1 Missense_Mutation p.T642K 0.15 deleterious(0.01) benign(0.09) TCGA-06-5416-01 19 6854100 6854100 C A VAV1 Silent p.I825I 0.38 TCGA-06-5416-01 19 6916345 6916345 C T EMR1 Silent p.I462I 0.14 TCGA-06-5416-01 19 6919601 6919601 C T EMR1 Missense_Mutation p.S488L 0.18 deleterious(0.03) benign(0.117) TCGA-06-5416-01 19 6924745 6924745 C T EMR1 Silent p.C616C 0.11 TCGA-06-5416-01 19 6924860 6924860 G A EMR1 Missense_Mutation p.G655S 0.60 tolerated(0.1) probably_damaging(0.933) TCGA-06-5416-01 19 6937630 6937630 C T EMR1 Silent p.L876L 0.49 TCGA-06-5416-01 19 6940166 6940166 C A EMR1 3'UTR 0.45 TCGA-06-5416-01 19 7117234 7117234 G A INSR Missense_Mutation p.P1328S 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 19 7585016 7585016 C T ZNF358 Silent p.C296C 0.22 TCGA-06-5416-01 19 7607465 7607465 G A PNPLA6 Missense_Mutation p.R433H 0.60 tolerated(0.06) possibly_damaging(0.635) TCGA-06-5416-01 19 7614876 7614876 C T PNPLA6 Silent p.F573F 0.41 TCGA-06-5416-01 19 7626455 7626455 C T PNPLA6 3'UTR 0.34 TCGA-06-5416-01 19 7690801 7690801 C T XAB2 Missense_Mutation p.A263T 0.12 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 19 7743091 7743091 C A C19orf59 Missense_Mutation p.L96I 0.32 tolerated(0.28) benign(0.168) TCGA-06-5416-01 19 7747393 7747393 C T TRAPPC5 Missense_Mutation p.A85V 0.36 tolerated(0.38) benign(0.005) TCGA-06-5416-01 19 7796655 7796655 G A CLEC4G Missense_Mutation p.P20S 0.21 tolerated(0.5) benign(0.001) TCGA-06-5416-01 19 7796983 7796983 G C CLEC4G Missense_Mutation p.D2E 0.50 tolerated(0.13) benign(0.079) TCGA-06-5416-01 19 7805640 7805640 C T CD209 3'UTR 0.13 TCGA-06-5416-01 19 7806085 7806085 C T CD209 3'UTR 0.38 TCGA-06-5416-01 19 7806485 7806485 C T CD209 3'UTR 0.32 TCGA-06-5416-01 19 7810717 7810717 C T CD209 Silent p.E145E 0.52 TCGA-06-5416-01 19 7810873 7810873 C T CD209 Silent p.E93E 0.54 TCGA-06-5416-01 19 7964391 7964391 C A LRRC8E Silent p.I328I 0.53 TCGA-06-5416-01 19 7964878 7964878 G A LRRC8E Missense_Mutation p.V491I 0.48 tolerated(0.23) benign(0.002) TCGA-06-5416-01 19 7965070 7965070 G A LRRC8E Missense_Mutation p.D555N 0.18 deleterious(0) possibly_damaging(0.837) TCGA-06-5416-01 19 7977267 7977267 C T MAP2K7 Missense_Mutation p.P404L 0.14 deleterious(0.01) benign(0.206) TCGA-06-5416-01 19 808751 808751 C A PTBP1 Silent p.L484L 0.31 TCGA-06-5416-01 19 8136980 8136980 G A FBN3 Silent p.G2680G 0.19 TCGA-06-5416-01 19 8171098 8171098 C T FBN3 Silent p.E1569E 0.47 TCGA-06-5416-01 19 8182168 8182168 G A FBN3 Silent p.N1157N 0.54 TCGA-06-5416-01 19 8188738 8188738 G A FBN3 Silent p.F962F 0.34 TCGA-06-5416-01 19 8197923 8197923 G A FBN3 Silent p.F553F 0.64 TCGA-06-5416-01 19 830861 830861 G A AZU1 Missense_Mutation p.V172M 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-06-5416-01 19 831742 831742 C T AZU1 Silent p.C207C 0.18 TCGA-06-5416-01 19 8389581 8389581 T C KANK3 Missense_Mutation p.Y739C 0.14 deleterious(0) possibly_damaging(0.878) TCGA-06-5416-01 19 8520338 8520338 A C HNRNPM Missense_Mutation p.K55Q 0.53 deleterious(0.01) probably_damaging(0.963) TCGA-06-5416-01 19 8553515 8553515 T C HNRNPM Intron 0.14 TCGA-06-5416-01 19 8576402 8576402 C T ZNF414 Missense_Mutation p.R298Q 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 19 8577308 8577308 G T ZNF414 Missense_Mutation p.H165N 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 19 8595422 8595422 G A MYO1F Silent p.F693F 0.56 TCGA-06-5416-01 19 8620564 8620564 G A MYO1F Silent p.R40R 0.31 TCGA-06-5416-01 19 8670209 8670209 G A ADAMTS10 Silent p.I41I 0.19 TCGA-06-5416-01 19 8808002 8808002 G A ACTL9 Silent p.F350F 0.43 TCGA-06-5416-01 19 881661 881661 C T MED16 Missense_Mutation p.D347N 0.55 tolerated(0.45) possibly_damaging(0.831) TCGA-06-5416-01 19 8841745 8841745 T C OR2Z1 Missense_Mutation p.S119P 0.37 deleterious(0) possibly_damaging(0.851) TCGA-06-5416-01 19 886157 886157 G T MED16 Missense_Mutation p.F164L 0.19 deleterious(0.01) benign(0.418) TCGA-06-5416-01 19 8922484 8922484 T C ZNF558 Missense_Mutation p.R228G 0.35 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 19 900110 900110 C T R3HDM4 Missense_Mutation p.R171H 0.16 deleterious(0.02) probably_damaging(0.971) TCGA-06-5416-01 19 9003324 9003324 G T MUC16 Missense_Mutation p.L13371M 0.14 probably_damaging(0.999) TCGA-06-5416-01 19 9025644 9025644 G A MUC16 Silent p.F12270F 0.16 TCGA-06-5416-01 19 9046377 9046377 C T MUC16 Missense_Mutation p.A11752T 0.13 benign(0.008) TCGA-06-5416-01 19 9046459 9046459 C A MUC16 Missense_Mutation p.R11724S 0.15 benign(0.007) TCGA-06-5416-01 19 9048187 9048187 T C MUC16 Silent p.V11148V 0.53 TCGA-06-5416-01 19 9049528 9049528 A T MUC16 Missense_Mutation p.F10701L 0.37 benign(0.003) TCGA-06-5416-01 19 9057561 9057561 G A MUC16 Missense_Mutation p.S9962F 0.18 unknown(0) TCGA-06-5416-01 19 9058455 9058455 G A MUC16 Missense_Mutation p.T9664I 0.13 unknown(0) TCGA-06-5416-01 19 9060324 9060324 G T MUC16 Missense_Mutation p.S9041Y 0.13 unknown(0) TCGA-06-5416-01 19 9061096 9061096 C T MUC16 Missense_Mutation p.E8784K 0.15 unknown(0) TCGA-06-5416-01 19 9062702 9062702 G A MUC16 Silent p.S8248S 0.35 TCGA-06-5416-01 19 9063209 9063209 C T MUC16 Silent p.Q8079Q 0.22 TCGA-06-5416-01 19 9065232 9065232 G A MUC16 Missense_Mutation p.S7405F 0.52 unknown(0) TCGA-06-5416-01 19 9067038 9067038 G T MUC16 Missense_Mutation p.S6803Y 0.18 unknown(0) TCGA-06-5416-01 19 9067043 9067043 G T MUC16 Missense_Mutation p.F6801L 0.21 unknown(0) TCGA-06-5416-01 19 9067983 9067983 G T MUC16 Missense_Mutation p.T6488N 0.19 unknown(0) TCGA-06-5416-01 19 9068556 9068556 G T MUC16 Missense_Mutation p.P6297H 0.37 unknown(0) TCGA-06-5416-01 19 9068942 9068942 G A MUC16 Silent p.G6168G 0.14 TCGA-06-5416-01 19 9070528 9070528 T C MUC16 Missense_Mutation p.T5640A 0.11 unknown(0) TCGA-06-5416-01 19 9072331 9072331 A C MUC16 Missense_Mutation p.S5039A 0.22 unknown(0) TCGA-06-5416-01 19 9073228 9073228 C T MUC16 Missense_Mutation p.D4740N 0.18 unknown(0) TCGA-06-5416-01 19 9074088 9074088 G A MUC16 Missense_Mutation p.P4453L 0.38 unknown(0) TCGA-06-5416-01 19 9075731 9075731 C T MUC16 Silent p.R3905R 0.18 TCGA-06-5416-01 19 9076177 9076177 C T MUC16 Missense_Mutation p.A3757T 0.56 unknown(0) TCGA-06-5416-01 19 9076508 9076508 G T MUC16 Silent p.S3646S 0.53 TCGA-06-5416-01 19 9077386 9077386 T C MUC16 Missense_Mutation p.T3354A 0.51 unknown(0) TCGA-06-5416-01 19 9077545 9077545 G T MUC16 Missense_Mutation p.P3301T 0.12 unknown(0) TCGA-06-5416-01 19 9083614 9083614 G T MUC16 Missense_Mutation p.A2734D 0.43 unknown(0) TCGA-06-5416-01 19 9084311 9084311 G A MUC16 Missense_Mutation p.P2502S 0.38 unknown(0) TCGA-06-5416-01 19 9084731 9084731 C A MUC16 Nonsense_Mutation p.E2362* 0.16 TCGA-06-5416-01 19 9088582 9088582 A G MUC16 Missense_Mutation p.V1078A 0.19 unknown(0) TCGA-06-5416-01 19 9204013 9204013 C T OR1M1 Silent p.F31F 0.52 TCGA-06-5416-01 19 920418 920418 C T KISS1R Silent p.G289G 0.16 TCGA-06-5416-01 19 9213144 9213144 T C OR7G2 Missense_Mutation p.Y280C 0.12 deleterious(0.03) benign(0.315) TCGA-06-5416-01 19 9213395 9213395 C T OR7G2 Silent p.P196P 0.46 TCGA-06-5416-01 19 9271492 9271492 G A ZNF317 Missense_Mutation p.E391K 0.16 tolerated(0.1) benign(0.342) TCGA-06-5416-01 19 9407464 9407464 C A ZNF699 Missense_Mutation p.D206Y 0.53 tolerated(1) benign(0.08) TCGA-06-5416-01 19 9453717 9453717 T G ZNF559 Missense_Mutation p.N530K 0.19 tolerated(0.71) benign(0.115) TCGA-06-5416-01 19 9490226 9490226 C A ZNF177 Missense_Mutation p.L62M 0.54 tolerated(0.24) possibly_damaging(0.628) TCGA-06-5416-01 19 9524474 9524474 C T ZNF266 Missense_Mutation p.G376E 0.18 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 19 9577318 9577318 C T ZNF560 Missense_Mutation p.E769K 0.49 tolerated(0.8) possibly_damaging(0.874) TCGA-06-5416-01 19 9577477 9577477 C T ZNF560 Missense_Mutation p.D716N 0.16 tolerated(0.27) benign(0.036) TCGA-06-5416-01 19 9577761 9577761 C T ZNF560 Missense_Mutation p.R621K 0.36 tolerated(0.06) benign(0.003) TCGA-06-5416-01 19 9578462 9578462 C T ZNF560 Silent p.V387V 0.19 TCGA-06-5416-01 19 9639318 9639318 C T ZNF426 Missense_Mutation p.R468Q 0.13 deleterious(0.03) benign(0.341) TCGA-06-5416-01 19 9639822 9639822 C T ZNF426 Missense_Mutation p.R300Q 0.35 tolerated(0.56) benign(0.014) TCGA-06-5416-01 19 9639964 9639964 C T ZNF426 Missense_Mutation p.E253K 0.37 tolerated(0.3) possibly_damaging(0.652) TCGA-06-5416-01 19 966721 966721 C T ARID3A Missense_Mutation p.R450W 0.13 deleterious(0) possibly_damaging(0.673) TCGA-06-5416-01 19 9721137 9721137 C A ZNF561 Missense_Mutation p.K400N 0.18 deleterious(0) probably_damaging(0.916) TCGA-06-5416-01 1 100194166 100194166 C T FRRS1 Missense_Mutation p.A297T 0.40 tolerated(0.25) benign(0.192) TCGA-06-5416-01 1 100340309 100340309 G T AGL Missense_Mutation p.R342I 0.23 deleterious(0.01) benign(0.318) TCGA-06-5416-01 1 100343251 100343251 T C AGL Missense_Mutation p.L493S 0.51 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 100349905 100349905 G C AGL Missense_Mutation p.S815T 0.17 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 1 100358068 100358068 C T AGL Missense_Mutation p.S1055F 0.20 deleterious(0.05) benign(0.252) TCGA-06-5416-01 1 100551122 100551122 C T SASS6 Missense_Mutation p.G613R 0.19 deleterious(0.02) possibly_damaging(0.542) TCGA-06-5416-01 1 100587060 100587060 T C SASS6 Silent p.S119S 0.23 TCGA-06-5416-01 1 100614182 100614182 C A TRMT13 Missense_Mutation p.L418I 0.34 tolerated(0.64) benign(0.005) TCGA-06-5416-01 1 100742858 100742858 C T RTCA Missense_Mutation p.S275L 0.18 deleterious(0) benign(0.017) TCGA-06-5416-01 1 101185358 101185358 G T VCAM1 5'UTR 0.31 TCGA-06-5416-01 1 101203766 101203766 T C VCAM1 Missense_Mutation p.I716T 0.43 tolerated(0.07) benign(0.082) TCGA-06-5416-01 1 101343271 101343271 G T EXTL2 Missense_Mutation p.S65Y 0.21 deleterious(0.01) possibly_damaging(0.774) TCGA-06-5416-01 1 101343416 101343416 G A EXTL2 Nonsense_Mutation p.R17* 0.11 TCGA-06-5416-01 1 101427407 101427407 C A SLC30A7 Missense_Mutation p.S289Y 0.18 deleterious(0) possibly_damaging(0.905) TCGA-06-5416-01 1 10166555 10166555 G A UBE4B Silent p.Q370Q 0.50 TCGA-06-5416-01 1 101705395 101705395 G T S1PR1 Missense_Mutation p.K285N 0.20 tolerated(0.1) benign(0.014) TCGA-06-5416-01 1 10197216 10197216 T G UBE4B Missense_Mutation p.S772R 0.38 deleterious(0.02) possibly_damaging(0.871) TCGA-06-5416-01 1 10221291 10221291 C A UBE4B Missense_Mutation p.H1049N 0.47 deleterious(0) possibly_damaging(0.53) TCGA-06-5416-01 1 103343611 103343611 G A COL11A1 Silent p.F1795F 0.19 TCGA-06-5416-01 1 103352601 103352601 A G COL11A1 Silent p.G1540G 0.20 TCGA-06-5416-01 1 103471635 103471635 G T COL11A1 Missense_Mutation p.P594T 0.45 unknown(0) TCGA-06-5416-01 1 103471865 103471865 G A COL11A1 Nonsense_Mutation p.R564* 0.16 TCGA-06-5416-01 1 103491404 103491404 C A COL11A1 Intron 0.21 TCGA-06-5416-01 1 10384112 10384112 G T KIF1B Missense_Mutation p.E797D 0.20 tolerated(0.18) benign(0.006) TCGA-06-5416-01 1 10421068 10421068 A C KIF1B Missense_Mutation p.E1333D 0.22 tolerated(0.09) possibly_damaging(0.615) TCGA-06-5416-01 1 10425540 10425540 C T KIF1B Missense_Mutation p.S1483L 0.22 tolerated(0.24) benign(0.003) TCGA-06-5416-01 1 10479828 10479828 C T PGD 3'UTR 0.20 TCGA-06-5416-01 1 10700031 10700031 C T CASZ1 Silent p.R1416R 0.52 TCGA-06-5416-01 1 10708124 10708124 C T CASZ1 Silent p.E1077E 0.20 TCGA-06-5416-01 1 10710771 10710771 A C CASZ1 Missense_Mutation p.L953R 0.50 deleterious_low_confidence(0.01) probably_damaging(0.962) TCGA-06-5416-01 1 10725505 10725505 C T CASZ1 Missense_Mutation p.R47Q 0.33 tolerated_low_confidence(0.17) benign(0.14) TCGA-06-5416-01 1 10725579 10725579 C T CASZ1 Silent p.A22A 0.42 TCGA-06-5416-01 1 108507417 108507417 C T VAV3 Nonsense_Mutation p.W25* 0.15 TCGA-06-5416-01 1 108679206 108679206 C T SLC25A24 3'UTR 0.26 TCGA-06-5416-01 1 108700132 108700132 G A SLC25A24 Silent p.V207V 0.19 TCGA-06-5416-01 1 109167287 109167287 C A FAM102B Missense_Mutation p.S158Y 0.43 tolerated(0.14) benign(0.001) TCGA-06-5416-01 1 109241848 109241848 C T PRPF38B Missense_Mutation p.R283W 0.42 deleterious(0) unknown(0) TCGA-06-5416-01 1 109242361 109242361 G T PRPF38B Nonsense_Mutation p.E454* 0.17 TCGA-06-5416-01 1 109242414 109242414 T C PRPF38B Silent p.S471S 0.22 TCGA-06-5416-01 1 109265107 109265107 C A FNDC7 Missense_Mutation p.S250Y 0.19 tolerated(0.17) possibly_damaging(0.841) TCGA-06-5416-01 1 109270631 109270631 C T FNDC7 Missense_Mutation p.S438L 0.37 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 1 109338981 109338981 C A STXBP3 Silent p.I412I 0.24 TCGA-06-5416-01 1 109440639 109440639 G A GPSM2 Missense_Mutation p.S158N 0.42 tolerated(0.18) benign(0.001) TCGA-06-5416-01 1 109482357 109482357 A G CLCC1 Silent p.H314H 0.38 TCGA-06-5416-01 1 109486537 109486537 T C CLCC1 Missense_Mutation p.N161S 0.16 deleterious(0) possibly_damaging(0.832) TCGA-06-5416-01 1 109492455 109492455 G T CLCC1 Missense_Mutation p.S73Y 0.42 deleterious(0.03) benign(0.119) TCGA-06-5416-01 1 109517370 109517370 G A WDR47 Missense_Mutation p.A810V 0.16 deleterious(0.01) possibly_damaging(0.715) TCGA-06-5416-01 1 109553826 109553826 G A WDR47 Missense_Mutation p.A288V 0.41 deleterious(0.02) benign(0.065) TCGA-06-5416-01 1 109607195 109607195 C A TAF13 Nonsense_Mutation p.E109* 0.22 TCGA-06-5416-01 1 109707213 109707213 C T KIAA1324 Missense_Mutation p.R123W 0.48 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 109714501 109714501 C T KIAA1324 Missense_Mutation p.P161S 0.21 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 1 109794368 109794368 A G CELSR2 Missense_Mutation p.N556S 0.43 deleterious(0.05) benign(0.34) TCGA-06-5416-01 1 109808750 109808750 G A CELSR2 Missense_Mutation p.A1979T 0.41 tolerated(0.21) probably_damaging(0.968) TCGA-06-5416-01 1 109815472 109815472 G A CELSR2 Missense_Mutation p.D2721N 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 1 109838868 109838868 G A MYBPHL Silent p.R285R 0.22 TCGA-06-5416-01 1 109859482 109859482 G A SORT1 Missense_Mutation p.P747L 0.40 deleterious(0.04) benign(0.01) TCGA-06-5416-01 1 110018305 110018305 G A SYPL2 Missense_Mutation p.V78I 0.26 tolerated(0.4) benign(0.187) TCGA-06-5416-01 1 110050345 110050345 C T AMIGO1 Missense_Mutation p.R397H 0.50 tolerated(0.07) benign(0.363) TCGA-06-5416-01 1 110086413 110086413 G A GPR61 Missense_Mutation p.E257K 0.45 deleterious(0.02) possibly_damaging(0.788) TCGA-06-5416-01 1 110086565 110086565 C A GPR61 Missense_Mutation p.H307Q 0.27 tolerated(0.05) benign(0.285) TCGA-06-5416-01 1 110280157 110280157 G T GSTM3 Silent p.I167I 0.48 TCGA-06-5416-01 1 110280959 110280959 C A GSTM3 Missense_Mutation p.K73N 0.18 deleterious(0) possibly_damaging(0.764) TCGA-06-5416-01 1 110300457 110300457 G A EPS8L3 Silent p.C288C 0.45 TCGA-06-5416-01 1 110561083 110561083 C T AHCYL1 Silent p.I404I 0.42 TCGA-06-5416-01 1 110564350 110564350 G T AHCYL1 3'UTR 0.25 TCGA-06-5416-01 1 110593614 110593614 C T STRIP1 Missense_Mutation p.L665F 0.19 deleterious(0.01) benign(0.191) TCGA-06-5416-01 1 110709698 110709698 G T SLC6A17 Missense_Mutation p.K49N 0.35 tolerated(0.48) benign(0.025) TCGA-06-5416-01 1 110740858 110740858 G A SLC6A17 Missense_Mutation p.R659H 0.54 deleterious(0.04) probably_damaging(0.97) TCGA-06-5416-01 1 110741000 110741000 C T SLC6A17 Silent p.S706S 0.45 TCGA-06-5416-01 1 110766407 110766407 G A KCNC4 Silent p.A500A 0.18 TCGA-06-5416-01 1 110999134 110999134 C A PROK1 3'UTR 0.58 TCGA-06-5416-01 1 111060956 111060956 G A KCNA10 Missense_Mutation p.R152W 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 11132186 11132186 C A EXOSC10 Missense_Mutation p.D734Y 0.37 deleterious(0) benign(0.001) TCGA-06-5416-01 1 11134015 11134015 G A EXOSC10 Silent p.F711F 0.43 TCGA-06-5416-01 1 111492527 111492527 C A LRIF1 Missense_Mutation p.K605N 0.22 tolerated(0.31) benign(0.012) TCGA-06-5416-01 1 11158154 11158154 G A EXOSC10 Silent p.G57G 0.24 TCGA-06-5416-01 1 11167465 11167465 G T MTOR 3'UTR 0.16 TCGA-06-5416-01 1 1117125 1117125 G T TTLL10 Nonsense_Mutation p.E254* 0.36 TCGA-06-5416-01 1 111742250 111742250 G A DENND2D Missense_Mutation p.P80S 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 111772406 111772406 T G CHI3L2 Intron 0.20 TCGA-06-5416-01 1 111773484 111773484 C T CHI3L2 Missense_Mutation p.A64V 0.46 deleterious(0.01) probably_damaging(0.939) TCGA-06-5416-01 1 111784977 111784977 C A CHI3L2 Silent p.G388G 0.15 TCGA-06-5416-01 1 111861168 111861168 C T CHIA Silent p.I261I 0.45 TCGA-06-5416-01 1 111992484 111992484 C T ATP5F1 Silent p.F22F 0.19 TCGA-06-5416-01 1 112020679 112020679 C A C1orf162 Missense_Mutation p.H134Q 0.23 deleterious(0.02) benign(0.06) TCGA-06-5416-01 1 112269593 112269593 G T FAM212B Silent p.V297V 0.17 TCGA-06-5416-01 1 112298476 112298476 G T DDX20 5'UTR 0.33 TCGA-06-5416-01 1 112305436 112305436 C A DDX20 Intron 0.43 TCGA-06-5416-01 1 112308811 112308811 T C DDX20 Silent p.L589L 0.46 TCGA-06-5416-01 1 112319766 112319766 G A KCND3 Missense_Mutation p.R550C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.898) TCGA-06-5416-01 1 11259324 11259324 G A MTOR Missense_Mutation p.S1415F 0.43 deleterious(0) possibly_damaging(0.564) TCGA-06-5416-01 1 113202373 113202373 C T CAPZA1 Missense_Mutation p.A186V 0.42 deleterious(0.04) benign(0.029) TCGA-06-5416-01 1 113242541 113242541 C T MOV10 Missense_Mutation p.A912V 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 11334069 11334069 G A UBIAD1 Missense_Mutation p.A161T 0.23 deleterious(0) possibly_damaging(0.667) TCGA-06-5416-01 1 113456691 113456691 C T SLC16A1 Missense_Mutation p.G442D 0.21 tolerated(0.17) benign(0.392) TCGA-06-5416-01 1 113456705 113456705 G T SLC16A1 Silent p.L437L 0.20 TCGA-06-5416-01 1 113662019 113662019 C A LRIG2 Missense_Mutation p.H949N 0.25 tolerated(0.06) benign(0.075) TCGA-06-5416-01 1 1138981 1138981 A G TNFRSF18 Missense_Mutation p.V253A 0.13 tolerated_low_confidence(0.34) benign(0) TCGA-06-5416-01 1 114196599 114196599 G A MAGI3 Missense_Mutation p.G863D 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 114246771 114246771 A C PHTF1 Missense_Mutation p.S608A 0.45 deleterious(0.01) possibly_damaging(0.656) TCGA-06-5416-01 1 114301307 114301307 C T PHTF1 Missense_Mutation p.D7N 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 114309020 114309020 C T RSBN1 Missense_Mutation p.R664H 0.18 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 114340468 114340468 T C RSBN1 Missense_Mutation p.I298M 0.45 deleterious_low_confidence(0.04) benign(0.015) TCGA-06-5416-01 1 114447458 114447458 G T AP4B1 5'UTR 0.18 TCGA-06-5416-01 1 114454239 114454239 G T DCLRE1B Missense_Mutation p.R342M 0.05 deleterious(0) possibly_damaging(0.855) TCGA-06-5416-01 1 114454674 114454674 G A DCLRE1B Missense_Mutation p.S487N 0.50 tolerated_low_confidence(0.25) benign(0.079) TCGA-06-5416-01 1 114495404 114495404 C A HIPK1 Missense_Mutation p.L365I 0.41 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 114945410 114945410 G A TRIM33 Missense_Mutation p.A955V 0.44 tolerated(0.48) benign(0.002) TCGA-06-5416-01 1 115142850 115142850 C T DENND2C Missense_Mutation p.V694I 0.22 deleterious(0.01) benign(0.319) TCGA-06-5416-01 1 115144749 115144749 G A DENND2C Silent p.L578L 0.15 TCGA-06-5416-01 1 115166200 115166200 C T DENND2C Missense_Mutation p.E291K 0.14 tolerated(0.07) possibly_damaging(0.484) TCGA-06-5416-01 1 115220031 115220031 G A AMPD1 Silent p.F476F 0.38 TCGA-06-5416-01 1 115220970 115220970 G A AMPD1 Missense_Mutation p.S392F 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 1 115226825 115226825 T C AMPD1 Missense_Mutation p.Y214C 0.17 tolerated(0.16) benign(0.005) TCGA-06-5416-01 1 115226943 115226943 G A AMPD1 Missense_Mutation p.R175W 0.17 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 1 115273165 115273165 G A CSDE1 Silent p.L431L 0.28 TCGA-06-5416-01 1 115321812 115321812 T G SIKE1 Missense_Mutation p.K124T 0.22 deleterious(0) possibly_damaging(0.705) TCGA-06-5416-01 1 115401229 115401229 A C SYCP1 Missense_Mutation p.K118T 0.08 deleterious(0.04) probably_damaging(0.914) TCGA-06-5416-01 1 115576721 115576721 A G TSHB Missense_Mutation p.Y97C 0.42 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 1 11561407 11561407 G A PTCHD2 Missense_Mutation p.D120N 0.26 tolerated_low_confidence(0.05) probably_damaging(0.995) TCGA-06-5416-01 1 11562022 11562022 C A PTCHD2 Missense_Mutation p.L325M 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 1 11575550 11575550 C T PTCHD2 Silent p.I526I 0.43 TCGA-06-5416-01 1 11586740 11586740 G T PTCHD2 Missense_Mutation p.K882N 0.19 tolerated_low_confidence(0.11) benign(0.294) TCGA-06-5416-01 1 116206791 116206791 C T VANGL1 Silent p.I238I 0.22 TCGA-06-5416-01 1 116225073 116225073 C T VANGL1 Nonsense_Mutation p.R301* 0.50 TCGA-06-5416-01 1 116280902 116280902 C T CASQ2 Missense_Mutation p.E159K 0.39 tolerated(0.07) possibly_damaging(0.565) TCGA-06-5416-01 1 116675773 116675773 C T MAB21L3 Silent p.C292C 0.36 TCGA-06-5416-01 1 116946596 116946596 C T ATP1A1 Silent p.G1014G 0.25 TCGA-06-5416-01 1 117127352 117127352 C A IGSF3 Missense_Mutation p.E941D 0.43 deleterious(0.03) possibly_damaging(0.466) TCGA-06-5416-01 1 117131576 117131576 C T IGSF3 Missense_Mutation p.G747D 0.22 tolerated(0.44) probably_damaging(0.948) TCGA-06-5416-01 1 117150668 117150668 T G IGSF3 Missense_Mutation p.K373T 0.22 tolerated(0.24) possibly_damaging(0.9) TCGA-06-5416-01 1 117209096 117209096 G T IGSF3 5'UTR 0.12 TCGA-06-5416-01 1 117503984 117503984 G A PTGFRN Missense_Mutation p.V445I 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-06-5416-01 1 117564198 117564198 G A CD101 Missense_Mutation p.S674N 0.13 tolerated(0.07) benign(0.039) TCGA-06-5416-01 1 117564584 117564584 G A CD101 Missense_Mutation p.E803K 0.17 tolerated(0.17) benign(0.019) TCGA-06-5416-01 1 117618160 117618160 G T TTF2 Missense_Mutation p.E318D 0.21 tolerated(0.33) benign(0.01) TCGA-06-5416-01 1 117661253 117661253 G A TRIM45 Missense_Mutation p.P209S 0.43 deleterious(0.02) possibly_damaging(0.824) TCGA-06-5416-01 1 117663918 117663918 G A TRIM45 5'UTR 0.51 TCGA-06-5416-01 1 117699348 117699348 C A VTCN1 Missense_Mutation p.R98I 0.18 tolerated(0.12) possibly_damaging(0.808) TCGA-06-5416-01 1 117910868 117910868 G A MAN1A2 Silent p.P21P 0.48 TCGA-06-5416-01 1 117948199 117948199 G T MAN1A2 Missense_Mutation p.R196M 0.20 deleterious(0.02) benign(0.04) TCGA-06-5416-01 1 1179767 1179767 C A FAM132A Missense_Mutation p.K96N 0.26 deleterious(0.05) possibly_damaging(0.642) TCGA-06-5416-01 1 118165827 118165827 C A FAM46C Missense_Mutation p.L113M 0.22 tolerated(0.05) probably_damaging(0.913) TCGA-06-5416-01 1 118420720 118420720 G T GDAP2 Missense_Mutation p.H453N 0.20 deleterious(0.04) possibly_damaging(0.516) TCGA-06-5416-01 1 118454616 118454616 G A GDAP2 Missense_Mutation p.R187C 0.41 deleterious(0) probably_damaging(0.915) TCGA-06-5416-01 1 118483465 118483465 G T WDR3 Nonsense_Mutation p.E231* 0.18 TCGA-06-5416-01 1 118523966 118523966 T C SPAG17 Silent p.K1977K 0.43 TCGA-06-5416-01 1 11854460 11854460 G T MTHFR Silent p.V434V 0.15 TCGA-06-5416-01 1 11860307 11860307 C T MTHFR Missense_Mutation p.R183Q 0.40 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 1 118609508 118609508 G T SPAG17 Silent p.A800A 0.21 TCGA-06-5416-01 1 118623779 118623779 T C SPAG17 Silent p.R718R 0.46 TCGA-06-5416-01 1 118657953 118657953 G A SPAG17 Nonsense_Mutation p.R143* 0.41 TCGA-06-5416-01 1 11888517 11888517 C A CLCN6 Nonsense_Mutation p.C319* 0.40 TCGA-06-5416-01 1 11894601 11894601 C T CLCN6 Nonsense_Mutation p.R583* 0.39 TCGA-06-5416-01 1 11897505 11897505 G A CLCN6 Silent p.S748S 0.47 TCGA-06-5416-01 1 11982759 11982759 G T KIAA2013 Silent p.L607L 0.18 TCGA-06-5416-01 1 119936570 119936570 C A HAO2 3'UTR 0.26 TCGA-06-5416-01 1 119964793 119964793 C A HSD3B2 Silent p.V223V 0.41 TCGA-06-5416-01 1 119965133 119965133 C A HSD3B2 Missense_Mutation p.L337M 0.48 tolerated(0.06) possibly_damaging(0.696) TCGA-06-5416-01 1 12004669 12004669 G T PLOD1 Intron 0.37 TCGA-06-5416-01 1 120056914 120056914 C A HSD3B1 Silent p.I256I 0.30 TCGA-06-5416-01 1 120165540 120165540 C T ZNF697 Missense_Mutation p.D476N 0.59 tolerated(0.27) probably_damaging(0.996) TCGA-06-5416-01 1 12023656 12023656 G A PLOD1 Missense_Mutation p.E389K 0.41 deleterious(0) benign(0.03) TCGA-06-5416-01 1 120277371 120277371 C A PHGDH Missense_Mutation p.L209I 0.06 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 120311439 120311439 C T HMGCS2 Missense_Mutation p.R10H 0.44 tolerated_low_confidence(0.08) benign(0.004) TCGA-06-5416-01 1 12032976 12032976 G T PLOD1 Missense_Mutation p.Q650H 0.42 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 1 120337092 120337092 C T REG4 3'UTR 0.47 TCGA-06-5416-01 1 120439014 120439014 C T ADAM30 5'UTR 0.29 TCGA-06-5416-01 1 120458147 120458147 G A NOTCH2 Nonsense_Mutation p.R2400* 0.18 TCGA-06-5416-01 1 120468233 120468233 A G NOTCH2 Silent p.C1402C 0.26 TCGA-06-5416-01 1 12061522 12061522 G A MFN2 Missense_Mutation p.R294Q 0.56 tolerated(0.42) benign(0.084) TCGA-06-5416-01 1 12071646 12071646 G A MFN2 3'UTR 0.19 TCGA-06-5416-01 1 12170162 12170162 C T TNFRSF8 Missense_Mutation p.P193S 0.20 tolerated(0.42) benign(0.39) TCGA-06-5416-01 1 1221491 1221491 G T SCNN1D Missense_Mutation p.K248N 0.13 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 1 1225891 1225891 G T SCNN1D Missense_Mutation p.E605D 0.24 tolerated(0.22) possibly_damaging(0.532) TCGA-06-5416-01 1 12267100 12267100 G A TNFRSF1B 3'UTR 0.18 TCGA-06-5416-01 1 12267139 12267139 G A TNFRSF1B 3'UTR 0.51 TCGA-06-5416-01 1 12317111 12317111 G A VPS13D Missense_Mutation p.R303Q 0.15 possibly_damaging(0.894) TCGA-06-5416-01 1 12331099 12331099 G A VPS13D Missense_Mutation p.R674Q 0.23 probably_damaging(0.928) TCGA-06-5416-01 1 12337150 12337150 G A VPS13D Missense_Mutation p.E1169K 0.45 benign(0.037) TCGA-06-5416-01 1 12343551 12343551 G T VPS13D Nonsense_Mutation p.E1798* 0.19 TCGA-06-5416-01 1 12353681 12353681 G A VPS13D Missense_Mutation p.E1985K 0.27 possibly_damaging(0.8) TCGA-06-5416-01 1 12371512 12371512 G T VPS13D Nonsense_Mutation p.E2218* 0.09 TCGA-06-5416-01 1 12406681 12406681 G A VPS13D Missense_Mutation p.R3014K 0.27 benign(0.001) TCGA-06-5416-01 1 1244895 1244895 A G PUSL1 Missense_Mutation p.T129A 0.50 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 1 1249140 1249140 C T CPSF3L Missense_Mutation p.R316Q 0.19 tolerated(0.07) benign(0.131) TCGA-06-5416-01 1 12520290 12520290 G A VPS13D Silent p.S4167S 0.46 TCGA-06-5416-01 1 12566996 12566996 G A VPS13D Missense_Mutation p.R4295Q 0.27 probably_damaging(0.947) TCGA-06-5416-01 1 12567421 12567421 T C VPS13D Intron 0.34 TCGA-06-5416-01 1 12569046 12569046 G A VPS13D Missense_Mutation p.E4379K 0.41 probably_damaging(0.956) TCGA-06-5416-01 1 1267465 1267465 G A TAS1R3 Missense_Mutation p.R185H 0.23 deleterious(0.03) probably_damaging(0.928) TCGA-06-5416-01 1 1267749 1267749 G A TAS1R3 Missense_Mutation p.A280T 0.50 tolerated(0.06) possibly_damaging(0.527) TCGA-06-5416-01 1 1268658 1268658 C T TAS1R3 Missense_Mutation p.S500L 0.38 tolerated(0.37) benign(0.131) TCGA-06-5416-01 1 1271799 1271799 G A DVL1 Missense_Mutation p.S579L 0.64 deleterious(0.02) unknown(0) TCGA-06-5416-01 1 1275433 1275433 G A DVL1 Silent p.G298G 0.52 TCGA-06-5416-01 1 12776192 12776192 G A AADACL3 5'UTR 0.41 TCGA-06-5416-01 1 12835291 12835291 G A PRAMEF12 Missense_Mutation p.R94H 0.20 tolerated(0.4) benign(0.001) TCGA-06-5416-01 1 12854349 12854349 G A PRAMEF1 Silent p.P191P 0.13 TCGA-06-5416-01 1 12855721 12855721 G A PRAMEF1 Missense_Mutation p.R334H 0.12 tolerated(0.44) benign(0.001) TCGA-06-5416-01 1 12855915 12855915 C T PRAMEF1 Missense_Mutation p.R399C 0.08 tolerated(0.22) benign(0) TCGA-06-5416-01 1 12856058 12856058 G T PRAMEF1 Missense_Mutation p.Q446H 0.13 tolerated(0.38) benign(0.009) TCGA-06-5416-01 1 12885076 12885076 G T PRAMEF11 Missense_Mutation p.F345L 0.15 tolerated(0.55) probably_damaging(0.997) TCGA-06-5416-01 1 1309625 1309625 G A AURKAIP1 Missense_Mutation p.P85S 0.43 deleterious(0.02) benign(0.266) TCGA-06-5416-01 1 1309653 1309653 C A AURKAIP1 Missense_Mutation p.E75D 0.21 deleterious(0.01) possibly_damaging(0.823) TCGA-06-5416-01 1 1326217 1326217 C T CCNL2 Missense_Mutation p.D230N 0.21 tolerated(0.4) possibly_damaging(0.733) TCGA-06-5416-01 1 1334517 1334517 T C CCNL2 Missense_Mutation p.D57G 0.19 deleterious(0.03) possibly_damaging(0.612) TCGA-06-5416-01 1 1342305 1342305 T C MRPL20 Missense_Mutation p.K61R 0.19 tolerated(0.15) benign(0.244) TCGA-06-5416-01 1 1404080 1404080 C A ATAD3C 3'UTR 0.50 TCGA-06-5416-01 1 14105509 14105509 C T PRDM2 Nonsense_Mutation p.R407* 0.23 TCGA-06-5416-01 1 142713372 142713372 T G RP11-417J8.6 RNA 0.46 TCGA-06-5416-01 1 143767468 143767468 C A PPIAL4G Silent p.V127V 0.06 TCGA-06-5416-01 1 143767507 143767507 G T PPIAL4G Silent p.I114I 0.05 TCGA-06-5416-01 1 144815996 144815996 C T NBPF9 Missense_Mutation p.S197L 0.27 tolerated(0.2) probably_damaging(0.964) TCGA-06-5416-01 1 144828580 144828580 C A NBPF9 Silent p.V616V 0.18 TCGA-06-5416-01 1 144868160 144868160 A G PDE4DIP Missense_Mutation p.V1760A 0.11 tolerated(0.74) benign(0.002) TCGA-06-5416-01 1 144874695 144874695 G T PDE4DIP Missense_Mutation p.S1638Y 0.23 deleterious(0.01) possibly_damaging(0.481) TCGA-06-5416-01 1 144874772 144874772 G T PDE4DIP Missense_Mutation p.F1612L 0.21 tolerated(0.1) benign(0.113) TCGA-06-5416-01 1 144880763 144880763 G A PDE4DIP Missense_Mutation p.R1289W 0.11 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 144882580 144882580 C T PDE4DIP Missense_Mutation p.E1147K 0.20 tolerated(0.05) benign(0.062) TCGA-06-5416-01 1 144906440 144906440 A T PDE4DIP Missense_Mutation p.I806N 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 144921920 144921920 G A PDE4DIP Missense_Mutation p.A370V 0.12 tolerated(0.12) possibly_damaging(0.611) TCGA-06-5416-01 1 144930817 144930817 G T PDE4DIP Intron 0.12 TCGA-06-5416-01 1 145015988 145015988 G A RP11-326G21.1 5'Flank 0.11 TCGA-06-5416-01 1 145112502 145112502 G A SEC22B RNA 0.05 TCGA-06-5416-01 1 145209437 145209437 G A RP11-458D21.5 Splice_Site 0.16 TCGA-06-5416-01 1 145416447 145416447 G A HFE2 Silent p.S264S 0.48 TCGA-06-5416-01 1 145518146 145518146 G T PEX11B Missense_Mutation p.R83I 0.45 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 1 145522725 145522725 C T PEX11B Missense_Mutation p.L196F 0.48 deleterious(0.03) probably_damaging(0.99) TCGA-06-5416-01 1 145527615 145527615 C A ITGA10 Missense_Mutation p.L19I 0.42 deleterious(0.03) benign(0.176) TCGA-06-5416-01 1 145530354 145530354 G T ITGA10 Missense_Mutation p.R190I 0.23 deleterious(0) probably_damaging(0.943) TCGA-06-5416-01 1 145578135 145578135 G A PIAS3 Missense_Mutation p.R33Q 0.22 deleterious(0.03) possibly_damaging(0.842) TCGA-06-5416-01 1 145578662 145578662 G T PIAS3 Missense_Mutation p.E156D 0.20 deleterious(0) possibly_damaging(0.777) TCGA-06-5416-01 1 145761369 145761369 G A PDZK1 Silent p.A394A 0.36 TCGA-06-5416-01 1 145816708 145816708 G A GPR89A Silent p.S45S 0.26 TCGA-06-5416-01 1 146055430 146055430 C A NBPF11 Missense_Mutation p.D119Y 0.29 deleterious(0.03) possibly_damaging(0.873) TCGA-06-5416-01 1 146408114 146408114 A C NBPF12 Missense_Mutation p.K583T 0.33 possibly_damaging(0.709) TCGA-06-5416-01 1 146680574 146680574 G A FMO5 Missense_Mutation p.R224C 0.44 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 146680587 146680587 A C FMO5 Silent p.A219A 0.24 TCGA-06-5416-01 1 146687416 146687416 G A FMO5 Missense_Mutation p.H78Y 0.17 deleterious(0) benign(0.027) TCGA-06-5416-01 1 146743939 146743939 G A CHD1L Missense_Mutation p.A423T 0.38 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 146758041 146758041 G T CHD1L Missense_Mutation p.E695D 0.17 tolerated(0.2) benign(0.008) TCGA-06-5416-01 1 147090621 147090621 G T BCL9 Splice_Site p.X221_splice 0.36 TCGA-06-5416-01 1 147095987 147095987 G A BCL9 Missense_Mutation p.G1170S 0.14 tolerated(0.12) benign(0.002) TCGA-06-5416-01 1 147230852 147230852 C A GJA5 Silent p.V165V 0.37 TCGA-06-5416-01 1 147380308 147380308 C T GJA8 Missense_Mutation p.R76C 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 147380335 147380335 G A GJA8 Missense_Mutation p.V85I 0.22 deleterious(0.04) benign(0.355) TCGA-06-5416-01 1 147381109 147381109 G A GJA8 Missense_Mutation p.E343K 0.42 tolerated(0.16) benign(0.225) TCGA-06-5416-01 1 148011714 148011714 C A NBPF14 Nonsense_Mutation p.E517* 0.06 TCGA-06-5416-01 1 148024794 148024794 T C NBPF14 Missense_Mutation p.D74G 0.10 deleterious(0) possibly_damaging(0.839) TCGA-06-5416-01 1 148024915 148024915 C A NBPF14 Missense_Mutation p.V34F 0.47 tolerated(0.08) possibly_damaging(0.777) TCGA-06-5416-01 1 1480300 1480300 C A SSU72 Missense_Mutation p.D103Y 0.43 deleterious(0.04) possibly_damaging(0.853) TCGA-06-5416-01 1 148251815 148251815 C A NBPF20 3'UTR 0.24 TCGA-06-5416-01 1 148252050 148252050 G A NBPF20 Missense_Mutation p.S4564F 0.09 probably_damaging(0.993) TCGA-06-5416-01 1 149900665 149900665 G T MTMR11 3'UTR 0.17 TCGA-06-5416-01 1 149900830 149900830 T G MTMR11 3'UTR 0.46 TCGA-06-5416-01 1 149900911 149900911 C A MTMR11 3'UTR 0.21 TCGA-06-5416-01 1 149902404 149902404 G A MTMR11 Silent p.Y500Y 0.17 TCGA-06-5416-01 1 149903867 149903867 C A MTMR11 Silent p.V364V 0.15 TCGA-06-5416-01 1 149906098 149906098 G A MTMR11 Silent p.F223F 0.22 TCGA-06-5416-01 1 149939282 149939282 A T OTUD7B Missense_Mutation p.F147I 0.21 deleterious(0) possibly_damaging(0.504) TCGA-06-5416-01 1 1500034 1500034 G T SSU72 Intron 0.21 TCGA-06-5416-01 1 150039817 150039817 C T VPS45 5'UTR 0.43 TCGA-06-5416-01 1 150131192 150131192 A G PLEKHO1 Missense_Mutation p.D235G 0.25 tolerated(0.55) benign(0.043) TCGA-06-5416-01 1 150131768 150131768 G A PLEKHO1 3'UTR 0.22 TCGA-06-5416-01 1 150239783 150239783 C A APH1A Missense_Mutation p.D152Y 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 150248201 150248201 A G C1orf54 Missense_Mutation p.D61G 0.21 deleterious(0.01) benign(0.012) TCGA-06-5416-01 1 150256271 150256271 G A C1orf51 Silent p.K141K 0.22 TCGA-06-5416-01 1 150307476 150307476 G A PRPF3 Missense_Mutation p.A267T 0.45 tolerated(0.28) benign(0.022) TCGA-06-5416-01 1 150437071 150437071 A G RPRD2 Missense_Mutation p.K494E 0.12 deleterious_low_confidence(0.01) probably_damaging(0.993) TCGA-06-5416-01 1 150443220 150443220 C A RPRD2 Missense_Mutation p.S599Y 0.29 deleterious_low_confidence(0) possibly_damaging(0.629) TCGA-06-5416-01 1 150443266 150443266 C T RPRD2 Silent p.S614S 0.43 TCGA-06-5416-01 1 150444217 150444217 G A RPRD2 Silent p.P931P 0.49 TCGA-06-5416-01 1 150445520 150445520 C T RPRD2 Nonsense_Mutation p.R1366* 0.25 TCGA-06-5416-01 1 150460344 150460344 C T TARS2 Missense_Mutation p.S26L 0.19 tolerated(0.09) benign(0.001) TCGA-06-5416-01 1 150525392 150525392 C A ADAMTSL4 Missense_Mutation p.L33I 0.17 tolerated(0.19) benign(0.007) TCGA-06-5416-01 1 150530963 150530963 C T ADAMTSL4 Silent p.C799C 0.23 TCGA-06-5416-01 1 150532778 150532778 G A ADAMTSL4 3'UTR 0.52 TCGA-06-5416-01 1 150687152 150687152 G T HORMAD1 Missense_Mutation p.L61I 0.21 tolerated(0.24) benign(0.042) TCGA-06-5416-01 1 150689690 150689690 T G HORMAD1 Silent p.L34L 0.48 TCGA-06-5416-01 1 150724389 150724389 C T CTSS Silent p.Q165Q 0.40 TCGA-06-5416-01 1 150730441 150730441 G A CTSS Nonsense_Mutation p.R48* 0.18 TCGA-06-5416-01 1 150804340 150804340 G A ARNT Silent p.F303F 0.37 TCGA-06-5416-01 1 150936729 150936729 C A SETDB1 Silent p.I1255I 0.26 TCGA-06-5416-01 1 150940189 150940189 T G CERS2 Missense_Mutation p.K157T 0.49 tolerated(0.13) probably_damaging(1) TCGA-06-5416-01 1 150960588 150960588 G A ANXA9 Missense_Mutation p.S240N 0.22 tolerated(0.15) benign(0.124) TCGA-06-5416-01 1 150975118 150975118 G T FAM63A Nonsense_Mutation p.C40* 0.42 TCGA-06-5416-01 1 151006637 151006637 C A PRUNE Missense_Mutation p.A430D 0.18 deleterious(0.02) probably_damaging(0.924) TCGA-06-5416-01 1 151021125 151021125 C A C1orf56 Missense_Mutation p.L268I 0.42 tolerated(0.15) possibly_damaging(0.801) TCGA-06-5416-01 1 151023136 151023136 C A C1orf56 3'UTR 0.22 TCGA-06-5416-01 1 151148973 151148973 C T VPS72 3'UTR 0.37 TCGA-06-5416-01 1 151234735 151234735 G A PSMD4 Missense_Mutation p.R42H 0.33 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 151259280 151259280 G T ZNF687 Silent p.G171G 0.33 TCGA-06-5416-01 1 151288974 151288974 C T PI4KB Missense_Mutation p.R7Q 0.25 tolerated_low_confidence(0.21) benign(0) TCGA-06-5416-01 1 151337465 151337465 C T SELENBP1 Missense_Mutation p.R398H 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 151372073 151372073 T C PSMB4 Missense_Mutation p.F4L 0.46 tolerated(0.68) benign(0) TCGA-06-5416-01 1 151377165 151377165 A C POGZ 3'UTR 0.23 TCGA-06-5416-01 1 151378643 151378643 C A POGZ Missense_Mutation p.E956D 0.15 tolerated(0.24) probably_damaging(0.986) TCGA-06-5416-01 1 151396028 151396028 C T POGZ Splice_Site p.X508_splice 0.19 TCGA-06-5416-01 1 151396426 151396426 G A POGZ Nonsense_Mutation p.R508* 0.36 TCGA-06-5416-01 1 151403151 151403151 G T POGZ Silent p.I150I 0.22 TCGA-06-5416-01 1 151508336 151508336 G T CGN Missense_Mutation p.Q1053H 0.23 tolerated(0.06) possibly_damaging(0.771) TCGA-06-5416-01 1 151655865 151655865 G T SNX27 Missense_Mutation p.A395S 0.18 tolerated(0.13) benign(0.004) TCGA-06-5416-01 1 151655901 151655901 G A SNX27 Missense_Mutation p.E407K 0.16 deleterious(0.05) possibly_damaging(0.728) TCGA-06-5416-01 1 151734008 151734008 G T MRPL9 Missense_Mutation p.S169R 0.45 tolerated(0.53) benign(0.003) TCGA-06-5416-01 1 151773745 151773745 C A LINGO4 Missense_Mutation p.R479I 0.22 deleterious(0.01) benign(0.105) TCGA-06-5416-01 1 151820321 151820321 G T THEM5 Missense_Mutation p.S198Y 0.45 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 1 151955713 151955713 A G S100A10 Missense_Mutation p.S74P 0.20 tolerated(0.22) benign(0.033) TCGA-06-5416-01 1 151992740 151992740 A C NBPF18P RNA 0.36 TCGA-06-5416-01 1 152057526 152057526 G A TCHHL1 Missense_Mutation p.P878S 0.43 tolerated(0.14) benign(0.055) TCGA-06-5416-01 1 152058632 152058632 G T TCHHL1 Missense_Mutation p.S509Y 0.41 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 1 152082362 152082362 G A TCHH Missense_Mutation p.R1111W 0.23 unknown(0) TCGA-06-5416-01 1 152083755 152083755 T C TCHH Silent p.Q646Q 0.16 TCGA-06-5416-01 1 152084899 152084899 G A TCHH Missense_Mutation p.P265L 0.19 unknown(0) TCGA-06-5416-01 1 152187610 152187610 G T HRNR Silent p.G2165G 0.06 TCGA-06-5416-01 1 152275562 152275562 G A FLG Missense_Mutation p.L3934F 0.50 unknown(0) TCGA-06-5416-01 1 152276581 152276581 C T FLG Missense_Mutation p.S3594N 0.22 unknown(0) TCGA-06-5416-01 1 152277358 152277358 G T FLG Missense_Mutation p.S3335Y 0.23 unknown(0) TCGA-06-5416-01 1 152279112 152279112 G A FLG Silent p.S2750S 0.10 TCGA-06-5416-01 1 152324203 152324203 G A FLG2 Missense_Mutation p.S2020F 0.04 possibly_damaging(0.831) TCGA-06-5416-01 1 152636828 152636828 C T LCE2D Missense_Mutation p.R83W 0.17 tolerated_low_confidence(0.08) unknown(0) TCGA-06-5416-01 1 152732264 152732264 C T KPRP Missense_Mutation p.S67F 0.44 deleterious_low_confidence(0) possibly_damaging(0.885) TCGA-06-5416-01 1 152732907 152732907 C T KPRP Silent p.S281S 0.35 TCGA-06-5416-01 1 152770357 152770357 T C LCE1D Silent p.C29C 0.37 TCGA-06-5416-01 1 152777492 152777492 C A LCE1C 3'UTR 0.20 TCGA-06-5416-01 1 152777548 152777548 C A LCE1C 3'UTR 0.20 TCGA-06-5416-01 1 152857138 152857138 C A SMCP Silent p.V80V 0.20 TCGA-06-5416-01 1 152882504 152882504 A G IVL Silent p.Q77Q 0.39 TCGA-06-5416-01 1 152975652 152975652 G T SPRR3 Missense_Mutation p.K52N 0.44 tolerated(0.07) benign(0.104) TCGA-06-5416-01 1 153028984 153028984 C A SPRR2A 3'UTR 0.19 TCGA-06-5416-01 1 153029122 153029122 C T SPRR2A Silent p.P30P 0.18 TCGA-06-5416-01 1 153084991 153084991 T C SPRR2F Silent p.%3D 0.19 TCGA-06-5416-01 1 153085153 153085153 G A SPRR2F Silent p.P19P 0.21 TCGA-06-5416-01 1 153275032 153275032 C T PGLYRP3 Missense_Mutation p.C194Y 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 153362707 153362707 C A S100A8 Missense_Mutation p.D52Y 0.37 deleterious(0) possibly_damaging(0.73) TCGA-06-5416-01 1 153430348 153430348 T C S100A7 Silent p.G80G 0.43 TCGA-06-5416-01 1 153430384 153430384 C A S100A7 Missense_Mutation p.K68N 0.23 tolerated(0.14) benign(0.059) TCGA-06-5416-01 1 153516334 153516334 C A S100A4 Missense_Mutation p.E69D 0.45 deleterious(0.01) benign(0.046) TCGA-06-5416-01 1 153520310 153520310 C A S100A3 Nonsense_Mutation p.E52* 0.18 TCGA-06-5416-01 1 153604371 153604371 C T S100A1 3'UTR 0.30 TCGA-06-5416-01 1 153634937 153634937 C T ILF2 Missense_Mutation p.E370K 0.26 tolerated(0.75) unknown(0) TCGA-06-5416-01 1 153643429 153643429 C T ILF2 5'UTR 0.29 TCGA-06-5416-01 1 153730069 153730069 C T INTS3 Nonsense_Mutation p.R327* 0.38 TCGA-06-5416-01 1 153750796 153750796 C T SLC27A3 Missense_Mutation p.R488W 0.39 deleterious(0) possibly_damaging(0.862) TCGA-06-5416-01 1 153902755 153902755 G T DENND4B 3'UTR 0.20 TCGA-06-5416-01 1 153912136 153912136 A G DENND4B Missense_Mutation p.V583A 0.40 tolerated(0.32) benign(0.001) TCGA-06-5416-01 1 15392168 15392168 G T KAZN Nonsense_Mutation p.E381* 0.21 TCGA-06-5416-01 1 15392182 15392182 C T KAZN Silent p.F385F 0.22 TCGA-06-5416-01 1 154030588 154030588 C A NUP210L Missense_Mutation p.L1028F 0.37 deleterious(0.02) possibly_damaging(0.726) TCGA-06-5416-01 1 154091257 154091257 G T NUP210L Missense_Mutation p.L452I 0.19 tolerated(0.25) benign(0.007) TCGA-06-5416-01 1 154166176 154166176 T C TPM3 5'Flank 0.47 TCGA-06-5416-01 1 154187025 154187025 C T C1orf43 Missense_Mutation p.R65Q 0.34 tolerated(0.14) benign(0.076) TCGA-06-5416-01 1 15420722 15420722 G A KAZN Silent p.S423S 0.53 TCGA-06-5416-01 1 15420796 15420796 C T KAZN Missense_Mutation p.A448V 0.15 deleterious(0) benign(0.071) TCGA-06-5416-01 1 154232462 154232462 G A UBAP2L Silent p.P845P 0.22 TCGA-06-5416-01 1 154242815 154242815 C T UBAP2L 3'UTR 0.39 TCGA-06-5416-01 1 154248269 154248269 C A HAX1 3'UTR 0.16 TCGA-06-5416-01 1 154293648 154293648 C T AQP10 Missense_Mutation p.A6V 0.22 tolerated(0.34) benign(0.006) TCGA-06-5416-01 1 154293707 154293707 G A AQP10 Missense_Mutation p.A26T 0.17 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 154316450 154316450 C T ATP8B2 Nonsense_Mutation p.R647* 0.38 TCGA-06-5416-01 1 154316887 154316887 C T ATP8B2 Silent p.I717I 0.44 TCGA-06-5416-01 1 154493952 154493952 G A TDRD10 Silent p.P122P 0.45 TCGA-06-5416-01 1 154543688 154543688 C T CHRNB2 Missense_Mutation p.S130F 0.44 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 1 154574700 154574700 C T ADAR Missense_Mutation p.E140K 0.51 deleterious(0.01) possibly_damaging(0.85) TCGA-06-5416-01 1 154687420 154687420 C T KCNN3 Silent p.K587K 0.20 TCGA-06-5416-01 1 154744658 154744658 C T KCNN3 Missense_Mutation p.R414H 0.47 deleterious(0) possibly_damaging(0.814) TCGA-06-5416-01 1 154920166 154920166 C T PBXIP1 Silent p.R230R 0.22 TCGA-06-5416-01 1 154920621 154920621 G T PBXIP1 Missense_Mutation p.L211I 0.20 deleterious(0.01) probably_damaging(0.986) TCGA-06-5416-01 1 154931814 154931814 G A PYGO2 Missense_Mutation p.P221L 0.44 tolerated(0.77) benign(0) TCGA-06-5416-01 1 154965483 154965483 C T FLAD1 Silent p.N578N 0.20 TCGA-06-5416-01 1 154988913 154988913 C T ZBTB7B Missense_Mutation p.R492C 0.39 deleterious(0.01) probably_damaging(0.988) TCGA-06-5416-01 1 155005172 155005172 C T DCST2 Missense_Mutation p.R171Q 0.17 tolerated(0.1) benign(0.406) TCGA-06-5416-01 1 155006961 155006961 C A DCST1 Missense_Mutation p.L38M 0.45 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 1 155013915 155013915 G A DCST1 Missense_Mutation p.A192T 0.20 tolerated(0.68) benign(0) TCGA-06-5416-01 1 155015887 155015887 G T DCST1 Missense_Mutation p.E358D 0.23 tolerated(0.07) benign(0.071) TCGA-06-5416-01 1 155020373 155020373 C T DCST1 Missense_Mutation p.R575W 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 155041430 155041430 C A EFNA4 Intron 0.20 TCGA-06-5416-01 1 155058403 155058403 G A EFNA3 Missense_Mutation p.V165I 0.47 deleterious(0.03) possibly_damaging(0.574) TCGA-06-5416-01 1 155110560 155110560 G T SLC50A1 Missense_Mutation p.D184Y 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 155172678 155172678 C A THBS3 Missense_Mutation p.E294D 0.46 tolerated(0.51) benign(0.002) TCGA-06-5416-01 1 155209423 155209423 C T GBA Silent p.S146S 0.46 TCGA-06-5416-01 1 155233026 155233026 G A CLK2 Missense_Mutation p.R494W 0.46 deleterious_low_confidence(0.04) probably_damaging(0.998) TCGA-06-5416-01 1 155240671 155240671 C T CLK2 Missense_Mutation p.R33H 0.22 tolerated(0.13) unknown(0) TCGA-06-5416-01 1 155253804 155253804 C T HCN3 Missense_Mutation p.R250C 0.22 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 155263331 155263331 G A PKLR Silent p.S389S 0.16 TCGA-06-5416-01 1 155264493 155264493 G A PKLR Missense_Mutation p.R249W 0.41 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 155292463 155292463 G T RUSC1 Missense_Mutation p.R300I 0.47 deleterious_low_confidence(0) benign(0.193) TCGA-06-5416-01 1 155294550 155294550 C T RUSC1 Intron 0.27 TCGA-06-5416-01 1 155313441 155313441 C A ASH1L Missense_Mutation p.D2692Y 0.24 deleterious_low_confidence(0) possibly_damaging(0.795) TCGA-06-5416-01 1 155316173 155316173 C T ASH1L Splice_Site p.X2630_splice 0.22 TCGA-06-5416-01 1 15541733 15541733 G T TMEM51 Missense_Mutation p.K50N 0.39 tolerated(0.28) benign(0.311) TCGA-06-5416-01 1 155429676 155429676 G T ASH1L Silent p.T1666T 0.17 TCGA-06-5416-01 1 155447762 155447762 G T ASH1L Silent p.L1633L 0.21 TCGA-06-5416-01 1 155447913 155447913 G A ASH1L Missense_Mutation p.S1583F 0.43 deleterious_low_confidence(0.01) possibly_damaging(0.865) TCGA-06-5416-01 1 155491124 155491124 C A ASH1L Missense_Mutation p.D63Y 0.16 deleterious_low_confidence(0.01) benign(0.341) TCGA-06-5416-01 1 155582320 155582320 C T MSTO1 Nonsense_Mutation p.R309* 0.41 TCGA-06-5416-01 1 155630674 155630674 G A YY1AP1 Missense_Mutation p.R481W 0.23 tolerated_low_confidence(0.05) benign(0.049) TCGA-06-5416-01 1 155649223 155649223 G T YY1AP1 Missense_Mutation p.N172K 0.22 tolerated(0.08) possibly_damaging(0.885) TCGA-06-5416-01 1 155708099 155708099 G T DAP3 3'UTR 0.25 TCGA-06-5416-01 1 155721577 155721577 C A GON4L Missense_Mutation p.G2185V 0.43 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 1 155721961 155721961 C A GON4L Missense_Mutation p.R2087I 0.19 tolerated_low_confidence(0.05) benign(0.005) TCGA-06-5416-01 1 155722141 155722141 G A GON4L Missense_Mutation p.A2027V 0.32 tolerated_low_confidence(0.08) benign(0.008) TCGA-06-5416-01 1 155735109 155735109 C T GON4L Silent p.Q1385Q 0.22 TCGA-06-5416-01 1 155737330 155737330 A T GON4L Missense_Mutation p.F883L 0.22 tolerated(0.17) benign(0.191) TCGA-06-5416-01 1 155774904 155774904 C T GON4L Missense_Mutation p.R494Q 0.21 deleterious(0) benign(0.417) TCGA-06-5416-01 1 155823326 155823326 C A GON4L Missense_Mutation p.M82I 0.18 tolerated_low_confidence(0.7) benign(0) TCGA-06-5416-01 1 155823496 155823496 C T GON4L Missense_Mutation p.V26I 0.25 tolerated_low_confidence(0.14) benign(0.001) TCGA-06-5416-01 1 155838326 155838326 T C SYT11 Missense_Mutation p.I202T 0.41 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 155850349 155850349 G T SYT11 Missense_Mutation p.R307I 0.28 deleterious(0.02) possibly_damaging(0.682) TCGA-06-5416-01 1 155870074 155870074 C A RIT1 3'UTR 0.22 TCGA-06-5416-01 1 1559296 1559296 C T MIB2 Silent p.F245F 0.54 TCGA-06-5416-01 1 155935552 155935552 C T ARHGEF2 Splice_Site p.X114_splice 0.47 TCGA-06-5416-01 1 155979394 155979394 G A SSR2 Silent p.I163I 0.44 TCGA-06-5416-01 1 156046371 156046371 G T MEX3A Missense_Mutation p.F519L 0.12 tolerated(0.14) possibly_damaging(0.878) TCGA-06-5416-01 1 156180191 156180191 G A SLC25A44 Missense_Mutation p.R305Q 0.23 tolerated(0.15) benign(0.43) TCGA-06-5416-01 1 156255739 156255739 G A TMEM79 Missense_Mutation p.R241H 0.16 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 156263162 156263162 G A C1orf85 Missense_Mutation p.T335M 0.52 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 156263838 156263838 C T C1orf85 Missense_Mutation p.D257N 0.18 deleterious(0.01) possibly_damaging(0.652) TCGA-06-5416-01 1 156352108 156352108 C A RHBG Intron 0.58 TCGA-06-5416-01 1 156376900 156376900 G A C1orf61 Missense_Mutation p.A132V 0.48 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 1 156386657 156386657 C A C1orf61 Splice_Site 0.16 TCGA-06-5416-01 1 156438750 156438750 A G MEF2D Missense_Mutation p.S357P 0.20 tolerated(0.18) benign(0.179) TCGA-06-5416-01 1 156513967 156513967 G A IQGAP3 Missense_Mutation p.R813C 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 156517930 156517930 G A IQGAP3 Missense_Mutation p.R747W 0.11 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 1 156628020 156628020 G A BCAN Silent p.V798V 0.21 TCGA-06-5416-01 1 156640164 156640164 G A NES Silent p.P1272P 0.21 TCGA-06-5416-01 1 156641819 156641819 G A NES Missense_Mutation p.P721S 0.21 tolerated(0.41) benign(0.014) TCGA-06-5416-01 1 156641941 156641941 G T NES Missense_Mutation p.S680Y 0.17 tolerated(0.74) benign(0.073) TCGA-06-5416-01 1 156703907 156703907 G A RRNAD1 Missense_Mutation p.G248D 0.47 tolerated(0.55) benign(0.001) TCGA-06-5416-01 1 156708153 156708153 G A MRPL24 Silent p.V87V 0.42 TCGA-06-5416-01 1 156713092 156713092 G A HDGF 3'Flank 0.20 TCGA-06-5416-01 1 156779241 156779241 T C SH2D2A Silent p.K262K 0.20 TCGA-06-5416-01 1 156811224 156811224 G A INSRR Silent p.G1208G 0.43 TCGA-06-5416-01 1 156821485 156821485 C T INSRR Missense_Mutation p.G346D 0.21 tolerated(0.05) benign(0.109) TCGA-06-5416-01 1 156824028 156824028 C A INSRR Silent p.V51V 0.10 TCGA-06-5416-01 1 156873736 156873736 T C PEAR1 Silent p.C6C 0.36 TCGA-06-5416-01 1 156874581 156874581 G A PEAR1 Missense_Mutation p.S48N 0.46 tolerated(0.06) possibly_damaging(0.71) TCGA-06-5416-01 1 156880170 156880170 G A PEAR1 Missense_Mutation p.R608K 0.19 tolerated(0.17) benign(0.012) TCGA-06-5416-01 1 156901719 156901719 G T LRRC71 Missense_Mutation p.E447D 0.30 tolerated(0.19) probably_damaging(0.998) TCGA-06-5416-01 1 157068526 157068526 G A ETV3L Missense_Mutation p.A153V 0.24 deleterious(0.01) benign(0.267) TCGA-06-5416-01 1 157545232 157545232 G T FCRL4 3'UTR 0.46 TCGA-06-5416-01 1 157669499 157669499 G T FCRL3 Missense_Mutation p.P12H 0.37 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 157739822 157739822 G T FCRL2 Missense_Mutation p.F143L 0.42 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 1 157773831 157773831 G A FCRL1 Silent p.P41P 0.17 TCGA-06-5416-01 1 158057851 158057851 A C KIRREL Missense_Mutation p.N275H 0.21 deleterious(0.02) benign(0.016) TCGA-06-5416-01 1 15809820 15809820 G A CELA2B Missense_Mutation p.A140T 0.21 deleterious(0) possibly_damaging(0.906) TCGA-06-5416-01 1 158259897 158259897 G T CD1C Missense_Mutation p.G15C 0.16 deleterious(0.01) benign(0.304) TCGA-06-5416-01 1 158325805 158325805 A G CD1E Missense_Mutation p.T272A 0.39 deleterious(0.01) probably_damaging(0.915) TCGA-06-5416-01 1 158326601 158326601 G A CD1E Missense_Mutation p.R361K 0.22 tolerated(0.39) benign(0.345) TCGA-06-5416-01 1 158369154 158369154 G A OR10T2 Silent p.L35L 0.28 TCGA-06-5416-01 1 158450589 158450589 A G OR10R2 Missense_Mutation p.M308V 0.35 tolerated(1) benign(0.003) TCGA-06-5416-01 1 158549202 158549202 G T OR10X1 Missense_Mutation p.S163Y 0.19 tolerated(1) benign(0.071) TCGA-06-5416-01 1 158576891 158576891 C A OR10Z1 Silent p.I221I 0.18 TCGA-06-5416-01 1 158592841 158592841 C T SPTA1 Missense_Mutation p.E2018K 0.22 tolerated(0.14) benign(0.328) TCGA-06-5416-01 1 158622400 158622400 G T SPTA1 Missense_Mutation p.L1078I 0.39 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 158627401 158627401 G A SPTA1 Nonsense_Mutation p.R891* 0.19 TCGA-06-5416-01 1 158632592 158632592 C T SPTA1 Silent p.K788K 0.41 TCGA-06-5416-01 1 158644432 158644432 G T SPTA1 Silent p.L382L 0.20 TCGA-06-5416-01 1 158687377 158687377 T G OR6K3 Missense_Mutation p.I177L 0.20 tolerated(0.3) benign(0.107) TCGA-06-5416-01 1 158736164 158736164 G A OR6N1 Silent p.F103F 0.35 TCGA-06-5416-01 1 1588921 1588921 C A CDK11B Missense_Mutation p.K5N 0.35 probably_damaging(0.958) TCGA-06-5416-01 1 158908205 158908205 C T PYHIN1 Missense_Mutation p.S95F 0.18 deleterious(0.02) benign(0.014) TCGA-06-5416-01 1 158911837 158911837 C T PYHIN1 Missense_Mutation p.A217V 0.17 tolerated(1) benign(0) TCGA-06-5416-01 1 158911947 158911947 G A PYHIN1 Missense_Mutation p.V254I 0.16 deleterious(0.02) benign(0.044) TCGA-06-5416-01 1 159032333 159032333 G A AIM2 3'UTR 0.72 TCGA-06-5416-01 1 159558138 159558138 C T APCS Silent p.I104I 0.27 TCGA-06-5416-01 1 159558298 159558298 T A APCS Missense_Mutation p.S158T 0.23 tolerated(0.12) benign(0.013) TCGA-06-5416-01 1 159684270 159684270 C A CRP Missense_Mutation p.E2D 0.34 tolerated(0.48) benign(0.026) TCGA-06-5416-01 1 159779887 159779887 C T FCRL6 Missense_Mutation p.S297F 0.20 tolerated(0.07) benign(0.291) TCGA-06-5416-01 1 159825822 159825822 G A VSIG8 Silent p.L274L 0.44 TCGA-06-5416-01 1 159827880 159827880 C A VSIG8 Missense_Mutation p.A144S 0.20 tolerated(0.14) probably_damaging(0.975) TCGA-06-5416-01 1 159832361 159832361 C T VSIG8 5'UTR 0.40 TCGA-06-5416-01 1 159846466 159846466 C T CCDC19 Missense_Mutation p.R411Q 0.15 tolerated(1) benign(0.001) TCGA-06-5416-01 1 159846540 159846540 C A CCDC19 Splice_Site p.X387_splice 0.15 TCGA-06-5416-01 1 15986502 15986502 C T RSC1A1 Missense_Mutation p.R47C 0.45 deleterious(0.05) benign(0.008) TCGA-06-5416-01 1 159888802 159888802 C T TAGLN2 Intron 0.22 TCGA-06-5416-01 1 159897208 159897208 C T IGSF9 Missense_Mutation p.R1156Q 0.43 tolerated_low_confidence(0.06) probably_damaging(0.996) TCGA-06-5416-01 1 159897573 159897573 C A IGSF9 Missense_Mutation p.R1112I 0.18 deleterious_low_confidence(0) benign(0.09) TCGA-06-5416-01 1 159899987 159899987 G A IGSF9 Missense_Mutation p.L686F 0.27 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 159901685 159901685 C A IGSF9 Nonsense_Mutation p.E427* 0.17 TCGA-06-5416-01 1 159904497 159904497 C A IGSF9 Missense_Mutation p.Q263H 0.22 tolerated(0.12) benign(0.03) TCGA-06-5416-01 1 160011490 160011490 T G KCNJ10 Missense_Mutation p.E278A 0.49 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 160121875 160121875 G T ATP1A4 Missense_Mutation p.Q15H 0.18 tolerated_low_confidence(0.16) benign(0) TCGA-06-5416-01 1 160249384 160249384 G A PEX19 Missense_Mutation p.S286L 0.41 deleterious(0.02) benign(0.26) TCGA-06-5416-01 1 160265550 160265550 A C COPA Missense_Mutation p.F827V 0.21 deleterious(0.01) possibly_damaging(0.614) TCGA-06-5416-01 1 160341006 160341006 G T NHLH1 3'UTR 0.43 TCGA-06-5416-01 1 160390285 160390285 G T VANGL2 Missense_Mutation p.K295N 0.12 tolerated(0.05) probably_damaging(0.998) TCGA-06-5416-01 1 160458953 160458953 G A SLAMF6 Silent p.S268S 0.44 TCGA-06-5416-01 1 160461044 160461044 G T SLAMF6 Missense_Mutation p.L173I 0.42 tolerated(0.4) benign(0.103) TCGA-06-5416-01 1 16060342 16060342 C T PLEKHM2 Silent p.F991F 0.43 TCGA-06-5416-01 1 160607113 160607113 G A SLAMF1 Missense_Mutation p.R95C 0.22 deleterious(0.02) probably_damaging(0.951) TCGA-06-5416-01 1 16063151 16063151 C T SLC25A34 Silent p.V57V 0.51 TCGA-06-5416-01 1 16063156 16063156 C A SLC25A34 Missense_Mutation p.A59D 0.24 deleterious(0) possibly_damaging(0.568) TCGA-06-5416-01 1 160718292 160718292 C T SLAMF7 Silent p.L122L 0.51 TCGA-06-5416-01 1 160803905 160803905 G T CD244 Missense_Mutation p.S304Y 0.22 tolerated(0.56) possibly_damaging(0.466) TCGA-06-5416-01 1 160846583 160846583 G A ITLN1 Silent p.Y271Y 0.25 TCGA-06-5416-01 1 161009734 161009734 G A USF1 Silent p.V303V 0.43 TCGA-06-5416-01 1 161011537 161011537 C A USF1 Missense_Mutation p.D126Y 0.21 deleterious(0) possibly_damaging(0.543) TCGA-06-5416-01 1 161011635 161011635 G A USF1 Missense_Mutation p.A93V 0.12 tolerated(0.08) probably_damaging(0.939) TCGA-06-5416-01 1 161017815 161017815 G A ARHGAP30 Missense_Mutation p.A999V 0.40 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 161018090 161018090 G A ARHGAP30 Silent p.D907D 0.18 TCGA-06-5416-01 1 161018416 161018416 C T ARHGAP30 Missense_Mutation p.D799N 0.21 tolerated_low_confidence(0.48) benign(0.03) TCGA-06-5416-01 1 161021419 161021419 C T ARHGAP30 Missense_Mutation p.E369K 0.21 deleterious(0) possibly_damaging(0.557) TCGA-06-5416-01 1 161022127 161022127 G A ARHGAP30 Missense_Mutation p.R323W 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 161022480 161022480 G A ARHGAP30 Nonsense_Mutation p.Q258* 0.39 TCGA-06-5416-01 1 161023176 161023176 C T ARHGAP30 Splice_Site p.X179_splice 0.18 TCGA-06-5416-01 1 161024184 161024184 C A ARHGAP30 Missense_Mutation p.A170S 0.11 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 161029469 161029469 C A ARHGAP30 Missense_Mutation p.E45D 0.45 deleterious(0) possibly_damaging(0.863) TCGA-06-5416-01 1 161044035 161044035 G A PVRL4 Missense_Mutation p.R377C 0.51 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 1 161087963 161087963 C T NIT1 5'UTR 0.41 TCGA-06-5416-01 1 161092225 161092225 C T DEDD Silent p.E223E 0.44 TCGA-06-5416-01 1 161131853 161131853 C A USP21 Missense_Mutation p.S209Y 0.23 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 1 161137132 161137132 C T PPOX Intron 0.19 TCGA-06-5416-01 1 161172137 161172137 C T NDUFS2 5'UTR 0.17 TCGA-06-5416-01 1 161188733 161188733 G T FCER1G Nonstop_Mutation p.*87Yext*2 0.17 TCGA-06-5416-01 1 161192783 161192783 T C APOA2 Missense_Mutation p.Y37C 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 161199503 161199503 G A NR1I3 3'UTR 0.17 TCGA-06-5416-01 1 161200584 161200584 C A NR1I3 Intron 0.12 TCGA-06-5416-01 1 161202661 161202661 C T NR1I3 Missense_Mutation p.A162T 0.17 tolerated(0.1) benign(0.099) TCGA-06-5416-01 1 161334820 161334820 C A C1orf192 Nonsense_Mutation p.E157* 0.22 TCGA-06-5416-01 1 161480678 161480678 C T FCGR2A Missense_Mutation p.A225V 0.41 tolerated(0.46) benign(0.002) TCGA-06-5416-01 1 161495259 161495259 C T HSPA6 Missense_Mutation p.R271C 0.27 deleterious_low_confidence(0) possibly_damaging(0.508) TCGA-06-5416-01 1 161561072 161561072 C T FCGR2C 5'Flank 0.36 TCGA-06-5416-01 1 161594267 161594267 C T FCGR3B 3'UTR 0.20 TCGA-06-5416-01 1 161642966 161642966 G A FCGR2B Missense_Mutation p.G198E 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 161683090 161683090 C A FCRLA Missense_Mutation p.L357I 0.39 deleterious(0.02) benign(0.32) TCGA-06-5416-01 1 161789560 161789560 G A ATF6 Silent p.K349K 0.35 TCGA-06-5416-01 1 161953880 161953880 C T OLFML2B Missense_Mutation p.R613Q 0.15 tolerated(0.09) benign(0.127) TCGA-06-5416-01 1 161967626 161967626 C T OLFML2B Missense_Mutation p.R488Q 0.19 tolerated(0.07) benign(0.245) TCGA-06-5416-01 1 161967692 161967692 G A OLFML2B Missense_Mutation p.A466V 0.45 tolerated(0.22) benign(0.002) TCGA-06-5416-01 1 161976209 161976209 C A OLFML2B Nonsense_Mutation p.E201* 0.41 TCGA-06-5416-01 1 161976228 161976228 T G OLFML2B Missense_Mutation p.Q194H 0.23 tolerated(0.15) benign(0.003) TCGA-06-5416-01 1 161989861 161989861 C T OLFML2B Missense_Mutation p.A96T 0.42 tolerated(0.72) benign(0.001) TCGA-06-5416-01 1 16199526 16199526 G A SPEN Missense_Mutation p.R100H 0.16 probably_damaging(0.996) TCGA-06-5416-01 1 162040020 162040020 T C NOS1AP Missense_Mutation p.I18T 0.11 deleterious(0.01) possibly_damaging(0.889) TCGA-06-5416-01 1 162468024 162468024 G A UHMK1 Silent p.A78A 0.23 TCGA-06-5416-01 1 162536079 162536079 G A UAP1 Missense_Mutation p.R74Q 0.44 tolerated(0.57) benign(0.068) TCGA-06-5416-01 1 16257107 16257107 C T SPEN Missense_Mutation p.R1458C 0.47 probably_damaging(0.997) TCGA-06-5416-01 1 16257447 16257447 G A SPEN Missense_Mutation p.S1571N 0.20 benign(0.006) TCGA-06-5416-01 1 16259577 16259577 C A SPEN Missense_Mutation p.S2281Y 0.20 possibly_damaging(0.828) TCGA-06-5416-01 1 16261434 16261434 C T SPEN Missense_Mutation p.S2900L 0.43 probably_damaging(0.967) TCGA-06-5416-01 1 16268428 16268428 T C ZBTB17 3'UTR 0.20 TCGA-06-5416-01 1 162724625 162724625 C T DDR2 Missense_Mutation p.R133W 0.17 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 1 162729751 162729751 G T DDR2 Missense_Mutation p.R279S 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 162749985 162749985 T C DDR2 Silent p.R839R 0.24 TCGA-06-5416-01 1 162824747 162824747 G A C1orf110 Silent p.G239G 0.20 TCGA-06-5416-01 1 162829267 162829267 A G C1orf110 Missense_Mutation p.L57P 0.51 deleterious(0.02) probably_damaging(0.991) TCGA-06-5416-01 1 163122445 163122445 G T RGS5 Missense_Mutation p.F93L 0.21 deleterious(0) probably_damaging(0.918) TCGA-06-5416-01 1 163325167 163325167 G A NUF2 Missense_Mutation p.D435N 0.23 deleterious(0.01) benign(0.068) TCGA-06-5416-01 1 16354526 16354526 G A CLCNKA Missense_Mutation p.V294I 0.23 tolerated(1) benign(0.002) TCGA-06-5416-01 1 16374477 16374477 G A CLCNKB Missense_Mutation p.A146T 0.39 deleterious(0) possibly_damaging(0.517) TCGA-06-5416-01 1 16477415 16477415 C T EPHA2 Nonsense_Mutation p.W43* 0.13 TCGA-06-5416-01 1 165173012 165173012 C T LMX1A 3'UTR 0.21 TCGA-06-5416-01 1 165218757 165218757 C A LMX1A Missense_Mutation p.Q128H 0.46 tolerated(0.1) probably_damaging(0.918) TCGA-06-5416-01 1 16524974 16524974 G T ARHGEF19 3'UTR 0.33 TCGA-06-5416-01 1 16531398 16531398 G T ARHGEF19 Missense_Mutation p.S588Y 0.31 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 1 16534629 16534629 C T ARHGEF19 Silent p.E168E 0.23 TCGA-06-5416-01 1 165370381 165370381 C T RXRG 3'UTR 0.44 TCGA-06-5416-01 1 165414135 165414135 A G RXRG 5'UTR 0.22 TCGA-06-5416-01 1 165620323 165620323 A C MGST3 Missense_Mutation p.T64P 0.15 deleterious(0) probably_damaging(0.953) TCGA-06-5416-01 1 165636666 165636666 G C ALDH9A1 Missense_Mutation p.T410S 0.09 tolerated(0.23) benign(0.017) TCGA-06-5416-01 1 165859512 165859512 C T UCK2 Silent p.V57V 0.22 TCGA-06-5416-01 1 166039513 166039513 G A FAM78B Missense_Mutation p.R251W 0.19 tolerated(0.07) probably_damaging(0.971) TCGA-06-5416-01 1 16641868 16641868 C T FBXO42 Missense_Mutation p.D16N 0.42 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-06-5416-01 1 166818510 166818510 C T POGK Nonsense_Mutation p.R232* 0.16 TCGA-06-5416-01 1 166819728 166819728 C T POGK 3'UTR 0.23 TCGA-06-5416-01 1 166958588 166958588 C T MAEL 5'UTR 0.47 TCGA-06-5416-01 1 166990952 166990952 C T MAEL Missense_Mutation p.R389W 0.17 deleterious(0) benign(0.359) TCGA-06-5416-01 1 166991017 166991017 C A MAEL Missense_Mutation p.F410L 0.39 tolerated_low_confidence(0.25) benign(0.001) TCGA-06-5416-01 1 167025048 167025048 C A GPA33 Missense_Mutation p.D204Y 0.26 deleterious(0) probably_damaging(0.914) TCGA-06-5416-01 1 167082963 167082963 G T DUSP27 Missense_Mutation p.D43Y 0.22 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 1 167734869 167734869 C T MPZL1 Silent p.F47F 0.44 TCGA-06-5416-01 1 16774583 16774583 C T NECAP2 Silent p.F109F 0.44 TCGA-06-5416-01 1 167779026 167779026 C T ADCY10 Silent p.T1574T 0.22 TCGA-06-5416-01 1 167780049 167780049 C A ADCY10 Missense_Mutation p.Q1528H 0.24 tolerated(0.17) benign(0.009) TCGA-06-5416-01 1 167780057 167780057 C T ADCY10 Missense_Mutation p.D1526N 0.47 tolerated(0.2) benign(0.008) TCGA-06-5416-01 1 167805708 167805708 C T ADCY10 Missense_Mutation p.E1050K 0.19 tolerated(0.3) benign(0.105) TCGA-06-5416-01 1 167814994 167814994 G A ADCY10 Silent p.Y938Y 0.46 TCGA-06-5416-01 1 167815016 167815016 G T ADCY10 Missense_Mutation p.P931H 0.22 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 167815467 167815467 A C ADCY10 Silent p.L824L 0.47 TCGA-06-5416-01 1 167874292 167874292 G T ADCY10 Missense_Mutation p.F29L 0.21 tolerated(1) benign(0.17) TCGA-06-5416-01 1 168014423 168014423 T C DCAF6 Missense_Mutation p.V739A 0.41 deleterious_low_confidence(0) probably_damaging(0.941) TCGA-06-5416-01 1 168262507 168262507 G T TBX19 Missense_Mutation p.Q198H 0.52 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 1 168277995 168277995 G T TBX19 Missense_Mutation p.S311I 0.43 deleterious(0.04) benign(0.157) TCGA-06-5416-01 1 1684453 1684453 G A NADK Missense_Mutation p.R556W 0.23 deleterious(0.02) possibly_damaging(0.676) TCGA-06-5416-01 1 1688136 1688136 G T NADK Intron 0.38 TCGA-06-5416-01 1 1688653 1688653 C T NADK Silent p.Q224Q 0.23 TCGA-06-5416-01 1 16902871 16902871 C T NBPF1 Silent p.Q670Q 0.03 TCGA-06-5416-01 1 169076103 169076103 G A ATP1B1 Nonsense_Mutation p.W12* 0.21 TCGA-06-5416-01 1 16907979 16907979 C T NBPF1 Missense_Mutation p.E439K 0.13 deleterious(0.05) probably_damaging(0.993) TCGA-06-5416-01 1 169267806 169267806 A C NME7 Silent p.A212A 0.18 TCGA-06-5416-01 1 169272395 169272395 C A NME7 Missense_Mutation p.R143I 0.19 deleterious(0) benign(0.057) TCGA-06-5416-01 1 169388116 169388116 C A CCDC181 Intron 0.55 TCGA-06-5416-01 1 169390808 169390808 C T CCDC181 Silent p.P287P 0.22 TCGA-06-5416-01 1 169483622 169483622 G A F5 Missense_Mutation p.R2202C 0.52 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 169823686 169823686 C T SCYL3 Missense_Mutation p.A632T 0.21 tolerated(0.49) benign(0.004) TCGA-06-5416-01 1 169857885 169857885 C A SCYL3 Missense_Mutation p.D33Y 0.15 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 1 169941653 169941653 C A KIFAP3 Splice_Site p.X661_splice 0.27 TCGA-06-5416-01 1 170514119 170514119 C A GORAB Intron 0.52 TCGA-06-5416-01 1 170521327 170521327 C T GORAB Silent p.A303A 0.19 TCGA-06-5416-01 1 171076948 171076948 T C FMO3 Missense_Mutation p.Y152H 0.21 tolerated(0.54) possibly_damaging(0.633) TCGA-06-5416-01 1 171086343 171086343 G T FMO3 Missense_Mutation p.D454Y 0.21 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 171086431 171086431 G T FMO3 Missense_Mutation p.R483I 0.18 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 1 171174550 171174550 G A FMO2 Silent p.E320E 0.16 TCGA-06-5416-01 1 171177993 171177993 C T FMO2 Silent p.L439L 0.45 TCGA-06-5416-01 1 171244522 171244522 C A FMO1 Missense_Mutation p.A120D 0.15 tolerated(0.06) benign(0.009) TCGA-06-5416-01 1 171506460 171506460 T G PRRC2C Missense_Mutation p.S782R 0.21 unknown(0) TCGA-06-5416-01 1 171506614 171506614 T C PRRC2C Splice_Site p.X833_splice 0.25 TCGA-06-5416-01 1 171605702 171605702 G A MYOC Missense_Mutation p.T293M 0.23 deleterious(0) probably_damaging(0.911) TCGA-06-5416-01 1 171605720 171605720 C A MYOC Missense_Mutation p.R287I 0.45 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 1 171621618 171621618 C T MYOC Missense_Mutation p.G45D 0.40 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 1 171753248 171753248 C T METTL13 Silent p.F174F 0.45 TCGA-06-5416-01 1 172410831 172410831 C A PIGC 3'UTR 0.19 TCGA-06-5416-01 1 17266438 17266438 G A CROCC Missense_Mutation p.R553Q 0.38 probably_damaging(0.981) TCGA-06-5416-01 1 17266517 17266517 C T CROCC Silent p.G579G 0.22 TCGA-06-5416-01 1 17296853 17296853 G A CROCC Missense_Mutation p.A1853T 0.22 possibly_damaging(0.695) TCGA-06-5416-01 1 173010596 173010596 C A TNFSF18 Missense_Mutation p.D171Y 0.40 tolerated(0.98) possibly_damaging(0.679) TCGA-06-5416-01 1 173155940 173155940 C A TNFSF4 Missense_Mutation p.Q89H 0.39 deleterious(0) probably_damaging(0.922) TCGA-06-5416-01 1 17318305 17318305 C A ATP13A2 Missense_Mutation p.R725S 0.18 deleterious(0) benign(0.392) TCGA-06-5416-01 1 17326913 17326913 C T ATP13A2 Silent p.S274S 0.42 TCGA-06-5416-01 1 17326967 17326967 G T ATP13A2 Nonsense_Mutation p.Y256* 0.10 TCGA-06-5416-01 1 17330856 17330856 G A ATP13A2 Silent p.I176I 0.40 TCGA-06-5416-01 1 17332265 17332265 G A ATP13A2 Missense_Mutation p.P7S 0.28 tolerated_low_confidence(0.05) benign(0.149) TCGA-06-5416-01 1 17349179 17349179 C T SDHB Missense_Mutation p.R230H 0.07 deleterious(0.01) possibly_damaging(0.596) TCGA-06-5416-01 1 17355146 17355146 G T SDHB Silent p.V124V 0.45 TCGA-06-5416-01 1 173569310 173569310 C T SLC9C2 Silent p.T58T 0.19 TCGA-06-5416-01 1 173702898 173702898 C T KLHL20 Missense_Mutation p.R24C 0.22 deleterious(0.03) benign(0) TCGA-06-5416-01 1 173703162 173703162 C T KLHL20 Nonsense_Mutation p.R112* 0.38 TCGA-06-5416-01 1 173703205 173703205 C T KLHL20 Missense_Mutation p.A126V 0.40 tolerated(0.33) possibly_damaging(0.542) TCGA-06-5416-01 1 173720981 173720981 C T KLHL20 Missense_Mutation p.R226C 0.41 tolerated(0.07) probably_damaging(0.97) TCGA-06-5416-01 1 173735428 173735428 G T KLHL20 Missense_Mutation p.R432M 0.21 deleterious(0.04) probably_damaging(0.98) TCGA-06-5416-01 1 173825828 173825828 C A DARS2 Missense_Mutation p.L567M 0.05 deleterious(0.03) probably_damaging(0.951) TCGA-06-5416-01 1 173826804 173826804 C T DARS2 Silent p.V633V 0.18 TCGA-06-5416-01 1 173839613 173839613 C A ZBTB37 Missense_Mutation p.L84I 0.21 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 173881079 173881079 C T SERPINC1 Missense_Mutation p.R161Q 0.17 tolerated(0.1) probably_damaging(0.977) TCGA-06-5416-01 1 174247859 174247859 G A RABGAP1L Missense_Mutation p.R422Q 0.17 deleterious(0.04) probably_damaging(0.99) TCGA-06-5416-01 1 1747200 1747200 G A GNB1 Silent p.D66D 0.18 TCGA-06-5416-01 1 175067487 175067487 C T TNN Silent p.N625N 0.41 TCGA-06-5416-01 1 175097218 175097218 G A TNN Silent p.E1032E 0.23 TCGA-06-5416-01 1 175097755 175097755 C T TNN Missense_Mutation p.S1068L 0.45 tolerated(1) benign(0.016) TCGA-06-5416-01 1 175292357 175292357 C T TNR 3'UTR 0.35 TCGA-06-5416-01 1 175292513 175292513 G A TNR Missense_Mutation p.R1353W 0.46 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 1 175348829 175348829 T C TNR Missense_Mutation p.T608A 0.41 tolerated(0.55) benign(0.001) TCGA-06-5416-01 1 175937551 175937551 G A RFWD2 Intron 0.48 TCGA-06-5416-01 1 176668262 176668262 G A PAPPA2 Missense_Mutation p.E925K 0.18 tolerated(0.18) probably_damaging(0.922) TCGA-06-5416-01 1 176668444 176668444 G T PAPPA2 Missense_Mutation p.E985D 0.21 deleterious(0.04) probably_damaging(0.939) TCGA-06-5416-01 1 17682883 17682883 C T PADI4 Missense_Mutation p.S496F 0.19 deleterious(0) possibly_damaging(0.748) TCGA-06-5416-01 1 17685855 17685855 C A PADI4 Silent p.L570L 0.42 TCGA-06-5416-01 1 17690268 17690268 T C PADI4 3'UTR 0.40 TCGA-06-5416-01 1 177225152 177225152 C T BRINP2 Missense_Mutation p.R123C 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 177245338 177245338 T G BRINP2 Silent p.L260L 0.17 TCGA-06-5416-01 1 177250522 177250522 G A BRINP2 Missense_Mutation p.R737Q 0.47 tolerated(0.38) benign(0.115) TCGA-06-5416-01 1 17755625 17755625 C T RCC2 Missense_Mutation p.R119Q 0.37 deleterious(0) possibly_damaging(0.478) TCGA-06-5416-01 1 178410759 178410759 C T RASAL2 Missense_Mutation p.R302C 0.20 deleterious(0) possibly_damaging(0.901) TCGA-06-5416-01 1 178412137 178412137 A G RASAL2 Missense_Mutation p.T419A 0.47 tolerated(0.05) probably_damaging(0.994) TCGA-06-5416-01 1 178820184 178820184 T C ANGPTL1 3'UTR 0.40 TCGA-06-5416-01 1 178834438 178834438 G A ANGPTL1 Silent p.I158I 0.49 TCGA-06-5416-01 1 178861409 178861409 G A RALGPS2 Missense_Mutation p.R431Q 0.43 tolerated(0.43) benign(0.007) TCGA-06-5416-01 1 179052151 179052151 C T TOR3A Silent p.C112C 0.53 TCGA-06-5416-01 1 179310301 179310301 G T SOAT1 Missense_Mutation p.K212N 0.16 tolerated(0.46) benign(0.219) TCGA-06-5416-01 1 179460692 179460692 C T AXDND1 Missense_Mutation p.S704F 0.21 deleterious(0.03) benign(0.052) TCGA-06-5416-01 1 17949540 17949540 G A ARHGEF10L Missense_Mutation p.R357H 0.44 deleterious(0) possibly_damaging(0.486) TCGA-06-5416-01 1 179523746 179523746 C A AXDND1 3'UTR 0.24 TCGA-06-5416-01 1 179620099 179620099 A G TDRD5 Missense_Mutation p.N633S 0.46 deleterious(0.03) benign(0.417) TCGA-06-5416-01 1 179621225 179621225 C T TDRD5 Missense_Mutation p.P685S 0.40 tolerated(0.16) benign(0.02) TCGA-06-5416-01 1 179638357 179638357 C A TDRD5 Missense_Mutation p.S893Y 0.44 tolerated(0.05) possibly_damaging(0.481) TCGA-06-5416-01 1 179660172 179660172 A G TDRD5 3'UTR 0.50 TCGA-06-5416-01 1 179833851 179833851 T G TOR1AIP2 Intron 0.26 TCGA-06-5416-01 1 179887327 179887327 C A TOR1AIP1 Missense_Mutation p.L569M 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 179983470 179983470 C T CEP350 Nonsense_Mutation p.R628* 0.46 TCGA-06-5416-01 1 180012229 180012229 C T CEP350 Silent p.V1467V 0.17 TCGA-06-5416-01 1 180235688 180235688 G A LHX4 Missense_Mutation p.R137Q 0.54 deleterious(0.02) probably_damaging(0.978) TCGA-06-5416-01 1 180772622 180772622 C T XPR1 Nonsense_Mutation p.R108* 0.45 TCGA-06-5416-01 1 180794407 180794407 T G XPR1 Missense_Mutation p.F354C 0.47 deleterious(0.03) benign(0.053) TCGA-06-5416-01 1 180905013 180905013 C T KIAA1614 Silent p.G656G 0.52 TCGA-06-5416-01 1 180913721 180913721 C A KIAA1614 Intron 0.50 TCGA-06-5416-01 1 180914583 180914583 C T KIAA1614 Silent p.F1144F 0.40 TCGA-06-5416-01 1 180945613 180945613 G A STX6 3'UTR 0.15 TCGA-06-5416-01 1 181018257 181018257 C T MR1 Missense_Mutation p.S46L 0.23 tolerated(0.1) probably_damaging(0.999) TCGA-06-5416-01 1 181018351 181018351 G A MR1 Silent p.A77A 0.23 TCGA-06-5416-01 1 18149520 18149520 T C ACTL8 Missense_Mutation p.V6A 0.18 deleterious(0.01) benign(0.258) TCGA-06-5416-01 1 18152304 18152304 G A ACTL8 Missense_Mutation p.D131N 0.50 deleterious(0.05) benign(0.028) TCGA-06-5416-01 1 181680185 181680185 G A CACNA1E Missense_Mutation p.R384H 0.21 deleterious(0) possibly_damaging(0.522) TCGA-06-5416-01 1 181689381 181689381 G A CACNA1E Missense_Mutation p.M597I 0.19 deleterious(0) benign(0.072) TCGA-06-5416-01 1 181724509 181724509 C T CACNA1E Missense_Mutation p.S1322F 0.40 deleterious(0) possibly_damaging(0.632) TCGA-06-5416-01 1 181727217 181727217 C T CACNA1E Silent p.I1488I 0.48 TCGA-06-5416-01 1 181727991 181727991 C T CACNA1E Missense_Mutation p.A1531V 0.17 deleterious(0) possibly_damaging(0.787) TCGA-06-5416-01 1 181741329 181741329 G A CACNA1E Missense_Mutation p.V1701M 0.18 deleterious(0.01) possibly_damaging(0.867) TCGA-06-5416-01 1 181762804 181762804 C T CACNA1E Missense_Mutation p.P1968S 0.24 tolerated(0.2) possibly_damaging(0.641) TCGA-06-5416-01 1 181762862 181762862 C T CACNA1E Missense_Mutation p.S1987L 0.10 tolerated(0.65) benign(0.007) TCGA-06-5416-01 1 182353502 182353502 G T GLUL 3'UTR 0.26 TCGA-06-5416-01 1 182369700 182369700 C T TEDDM1 5'UTR 0.46 TCGA-06-5416-01 1 182615894 182615894 G A RGS8 Silent p.S191S 0.22 TCGA-06-5416-01 1 182845224 182845224 G T DHX9 Nonsense_Mutation p.E619* 0.17 TCGA-06-5416-01 1 182847299 182847299 G A DHX9 Missense_Mutation p.R781H 0.21 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 1 182869222 182869223 - T SHCBP1L Frame_Shift_Ins p.D620Rfs*2 0.42 TCGA-06-5416-01 1 182898795 182898795 A G SHCBP1L Missense_Mutation p.M390T 0.39 deleterious(0.04) benign(0.102) TCGA-06-5416-01 1 182908517 182908517 T C SHCBP1L Missense_Mutation p.I290M 0.19 deleterious(0.05) benign(0.132) TCGA-06-5416-01 1 182908533 182908533 A - SHCBP1L Intron 0.15 TCGA-06-5416-01 1 182909510 182909510 G A SHCBP1L Nonsense_Mutation p.Q242* 0.42 TCGA-06-5416-01 1 182921896 182921896 G T SHCBP1L Missense_Mutation p.L125M 0.15 tolerated(0.07) possibly_damaging(0.888) TCGA-06-5416-01 1 183072671 183072671 C T LAMC1 Silent p.F209F 0.16 TCGA-06-5416-01 1 183079663 183079663 G A LAMC1 Missense_Mutation p.E299K 0.47 tolerated(0.21) benign(0.342) TCGA-06-5416-01 1 183096362 183096362 C A LAMC1 Silent p.P982P 0.13 TCGA-06-5416-01 1 183187599 183187599 C T LAMC2 Missense_Mutation p.A160V 0.21 tolerated(0.18) possibly_damaging(0.785) TCGA-06-5416-01 1 183194798 183194798 C T LAMC2 Nonsense_Mutation p.R337* 0.42 TCGA-06-5416-01 1 183197547 183197547 G T LAMC2 Missense_Mutation p.D503Y 0.35 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 183212521 183212521 C T LAMC2 Missense_Mutation p.L1190F 0.18 deleterious(0.01) probably_damaging(0.937) TCGA-06-5416-01 1 183221820 183221820 C T NMNAT2 Missense_Mutation p.D294N 0.45 tolerated(0.07) probably_damaging(0.985) TCGA-06-5416-01 1 183498111 183498111 C T SMG7 Missense_Mutation p.A214V 0.25 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 1 183616660 183616660 T C APOBEC4 3'UTR 0.16 TCGA-06-5416-01 1 183885624 183885624 A G RGL1 Missense_Mutation p.D633G 0.49 tolerated(0.29) benign(0.038) TCGA-06-5416-01 1 183914667 183914667 T G COLGALT2 Missense_Mutation p.N390H 0.49 deleterious(0.01) benign(0.014) TCGA-06-5416-01 1 183920225 183920225 C T COLGALT2 Missense_Mutation p.R351H 0.24 deleterious(0.02) benign(0.344) TCGA-06-5416-01 1 183947620 183947620 C T COLGALT2 Missense_Mutation p.E100K 0.17 tolerated(0.28) benign(0.027) TCGA-06-5416-01 1 184041991 184041991 T G TSEN15 3'UTR 0.37 TCGA-06-5416-01 1 184446722 184446722 G A C1orf21 Missense_Mutation p.G27R 0.38 tolerated(0.05) probably_damaging(0.998) TCGA-06-5416-01 1 184688343 184688343 G T EDEM3 Missense_Mutation p.H372N 0.18 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 184690462 184690462 G A EDEM3 Silent p.V304V 0.38 TCGA-06-5416-01 1 184702094 184702094 G T EDEM3 Silent p.I163I 0.19 TCGA-06-5416-01 1 184706164 184706164 G A EDEM3 Missense_Mutation p.L114F 0.40 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 1 184706797 184706797 G A EDEM3 Nonsense_Mutation p.R85* 0.37 TCGA-06-5416-01 1 184792782 184792782 G A FAM129A Missense_Mutation p.T271M 0.44 deleterious(0.04) possibly_damaging(0.52) TCGA-06-5416-01 1 185068945 185068945 G A RNF2 Missense_Mutation p.A254T 0.21 deleterious(0.02) probably_damaging(0.972) TCGA-06-5416-01 1 185089296 185089296 G T TRMT1L Missense_Mutation p.S686Y 0.26 tolerated(0.05) benign(0.403) TCGA-06-5416-01 1 185119579 185119579 G T TRMT1L Missense_Mutation p.A131D 0.42 deleterious_low_confidence(0) possibly_damaging(0.889) TCGA-06-5416-01 1 185175849 185175849 G T SWT1 Missense_Mutation p.K642N 0.14 tolerated(0.29) benign(0.015) TCGA-06-5416-01 1 185269656 185269656 G A IVNS1ABP Silent p.V385V 0.45 TCGA-06-5416-01 1 185892537 185892537 T C HMCN1 Missense_Mutation p.V346A 0.25 possibly_damaging(0.857) TCGA-06-5416-01 1 185892752 185892752 G T HMCN1 Missense_Mutation p.V418L 0.22 possibly_damaging(0.785) TCGA-06-5416-01 1 185953314 185953314 C A HMCN1 Missense_Mutation p.P935H 0.22 probably_damaging(0.926) TCGA-06-5416-01 1 186026498 186026498 C T HMCN1 Missense_Mutation p.P2426L 0.17 probably_damaging(0.999) TCGA-06-5416-01 1 186056706 186056706 C T HMCN1 Missense_Mutation p.R3098W 0.21 possibly_damaging(0.851) TCGA-06-5416-01 1 186081959 186081959 C T HMCN1 Nonsense_Mutation p.R3669* 0.27 TCGA-06-5416-01 1 186106994 186106994 G A HMCN1 Missense_Mutation p.G4605D 0.41 possibly_damaging(0.894) TCGA-06-5416-01 1 18618401 18618401 C T IGSF21 Silent p.F75F 0.17 TCGA-06-5416-01 1 186276941 186276941 C T PRG4 Missense_Mutation p.A697V 0.44 unknown(0) TCGA-06-5416-01 1 186277687 186277688 - A PRG4 Frame_Shift_Ins p.T948Nfs*30 0.22 TCGA-06-5416-01 1 186281940 186281940 G T PRG4 Missense_Mutation p.R1344I 0.49 unknown(0) TCGA-06-5416-01 1 186286656 186286656 G T TPR Missense_Mutation p.L2300I 0.41 possibly_damaging(0.745) TCGA-06-5416-01 1 186358731 186358731 G A C1orf27 Missense_Mutation p.R150Q 0.73 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 1 186643848 186643848 G A PTGS2 Silent p.I484I 0.21 TCGA-06-5416-01 1 186862240 186862240 G A PLA2G4A Nonsense_Mutation p.W71* 0.17 TCGA-06-5416-01 1 186909111 186909111 G T PLA2G4A Splice_Site p.X307_splice 0.42 TCGA-06-5416-01 1 186909186 186909186 T C PLA2G4A Silent p.C331C 0.22 TCGA-06-5416-01 1 18702834 18702834 C T IGSF21 Missense_Mutation p.T349M 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 1 18808441 18808441 G A KLHDC7A Silent p.P322P 0.25 TCGA-06-5416-01 1 18809546 18809546 G A KLHDC7A Missense_Mutation p.A691T 0.43 deleterious(0.04) benign(0.023) TCGA-06-5416-01 1 190234101 190234101 G A BRINP3 Missense_Mutation p.S171L 0.19 tolerated_low_confidence(0.2) benign(0.015) TCGA-06-5416-01 1 19027165 19027165 C T PAX7 Missense_Mutation p.R269C 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 19062404 19062404 C T PAX7 Silent p.V478V 0.17 TCGA-06-5416-01 1 19062560 19062560 G A PAX7 3'UTR 0.33 TCGA-06-5416-01 1 19166526 19166526 C T TAS1R2 Missense_Mutation p.G696D 0.46 tolerated(0.47) benign(0.155) TCGA-06-5416-01 1 19186062 19186062 C A TAS1R2 Silent p.G31G 0.54 TCGA-06-5416-01 1 19202928 19202928 C T ALDH4A1 Missense_Mutation p.A407T 0.43 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 1 192779341 192779341 C A RGS2 Silent p.S52S 0.21 TCGA-06-5416-01 1 192780253 192780253 C A RGS2 Missense_Mutation p.F139L 0.17 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 192985502 192985502 C A UCHL5 Missense_Mutation p.K323N 0.36 tolerated(0.09) unknown(0) TCGA-06-5416-01 1 193105708 193105708 G A CDC73 Intron 0.32 TCGA-06-5416-01 1 193107279 193107279 G T CDC73 Missense_Mutation p.G163V 0.18 tolerated(0.08) benign(0.017) TCGA-06-5416-01 1 193149586 193149586 G A B3GALT2 Silent p.V369V 0.20 TCGA-06-5416-01 1 193150039 193150039 C A B3GALT2 Missense_Mutation p.Q218H 0.39 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 1 19471395 19471395 G A UBR4 Missense_Mutation p.T2651I 0.20 benign(0.445) TCGA-06-5416-01 1 19484363 19484363 G T UBR4 Silent p.L1902L 0.05 TCGA-06-5416-01 1 19524444 19524444 G T UBR4 Missense_Mutation p.L250I 0.20 possibly_damaging(0.773) TCGA-06-5416-01 1 19546149 19546149 C T EMC1 Missense_Mutation p.A906T 0.43 tolerated(1) benign(0.079) TCGA-06-5416-01 1 19563649 19563649 G T EMC1 Missense_Mutation p.F432L 0.41 tolerated(0.44) benign(0.241) TCGA-06-5416-01 1 1956405 1956405 C T GABRD Silent p.Y31Y 0.41 TCGA-06-5416-01 1 1961504 1961504 G A GABRD Missense_Mutation p.R381H 0.23 tolerated(0.14) benign(0.002) TCGA-06-5416-01 1 196227421 196227421 C A KCNT2 Missense_Mutation p.Q1038H 0.46 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 1 19632620 19632620 G A AKR7A2 Silent p.F270F 0.27 TCGA-06-5416-01 1 196367718 196367718 T G KCNT2 Missense_Mutation p.E423D 0.24 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 1 196395069 196395069 C T KCNT2 Missense_Mutation p.R345Q 0.44 tolerated(0.07) probably_damaging(0.981) TCGA-06-5416-01 1 19653762 19653762 C T PQLC2 Silent p.F220F 0.48 TCGA-06-5416-01 1 196642295 196642295 T C CFH Splice_Site p.X82_splice 0.42 TCGA-06-5416-01 1 196646760 196646760 C T CFH Silent p.D194D 0.18 TCGA-06-5416-01 1 196706047 196706047 C A CFH Missense_Mutation p.S836Y 0.19 deleterious(0) benign(0.09) TCGA-06-5416-01 1 196857284 196857284 T G CFHR4 Missense_Mutation p.L2V 0.21 tolerated(0.1) benign(0.003) TCGA-06-5416-01 1 196928146 196928146 C T CFHR2 Missense_Mutation p.S250F 0.39 deleterious(0.01) possibly_damaging(0.649) TCGA-06-5416-01 1 197009749 197009749 C A F13B Missense_Mutation p.D619Y 0.20 deleterious(0) benign(0.14) TCGA-06-5416-01 1 197029665 197029665 C T F13B Silent p.K212K 0.19 TCGA-06-5416-01 1 197030049 197030049 G T F13B Missense_Mutation p.S203Y 0.21 deleterious(0) possibly_damaging(0.896) TCGA-06-5416-01 1 197062323 197062323 C T ASPM Silent p.R3051R 0.21 TCGA-06-5416-01 1 197063260 197063260 G A ASPM Missense_Mutation p.A3013V 0.21 tolerated(0.05) possibly_damaging(0.703) TCGA-06-5416-01 1 197070625 197070625 T G ASPM Missense_Mutation p.K2586Q 0.51 tolerated(0.29) benign(0.288) TCGA-06-5416-01 1 197071056 197071056 C T ASPM Missense_Mutation p.R2442Q 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 1 197071927 197071927 C T ASPM Missense_Mutation p.A2152T 0.39 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 1 197072347 197072347 C A ASPM Nonsense_Mutation p.E2012* 0.21 TCGA-06-5416-01 1 197098325 197098325 C T ASPM Missense_Mutation p.E918K 0.43 deleterious(0.03) benign(0.271) TCGA-06-5416-01 1 197099048 197099048 C T ASPM Missense_Mutation p.D876N 0.49 tolerated(0.07) possibly_damaging(0.881) TCGA-06-5416-01 1 197113222 197113222 C T ASPM Silent p.E102E 0.33 TCGA-06-5416-01 1 197160927 197160927 C T ZBTB41 Missense_Mutation p.R408K 0.49 tolerated(0.99) benign(0.001) TCGA-06-5416-01 1 197169093 197169093 C A ZBTB41 Missense_Mutation p.V171L 0.12 tolerated_low_confidence(0.32) benign(0.069) TCGA-06-5416-01 1 197169439 197169439 A T ZBTB41 Silent p.P55P 0.19 TCGA-06-5416-01 1 197390489 197390489 G A CRB1 Missense_Mutation p.A511T 0.19 tolerated(1) benign(0.015) TCGA-06-5416-01 1 197390708 197390708 G A CRB1 Missense_Mutation p.D584N 0.23 deleterious(0.02) possibly_damaging(0.871) TCGA-06-5416-01 1 197552345 197552345 C T DENND1B Silent p.K362K 0.17 TCGA-06-5416-01 1 198723404 198723404 A G PTPRC Silent p.G1172G 0.23 TCGA-06-5416-01 1 198723496 198723496 C T PTPRC Missense_Mutation p.A1203V 0.19 deleterious(0.04) benign(0.196) TCGA-06-5416-01 1 198725038 198725038 C T PTPRC Nonsense_Mutation p.Q1217* 0.18 TCGA-06-5416-01 1 19992159 19992159 A G HTR6 5'UTR 0.36 TCGA-06-5416-01 1 200376042 200376042 C A ZNF281 3'UTR 0.24 TCGA-06-5416-01 1 200522477 200522477 C A KIF14 3'UTR 0.19 TCGA-06-5416-01 1 200534600 200534600 C A KIF14 Nonsense_Mutation p.E1287* 0.36 TCGA-06-5416-01 1 200561344 200561344 C A KIF14 Missense_Mutation p.D893Y 0.18 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 1 200586821 200586821 T G KIF14 Missense_Mutation p.N344T 0.21 tolerated(0.21) benign(0.022) TCGA-06-5416-01 1 200613607 200613607 C T DDX59 Silent p.A545A 0.45 TCGA-06-5416-01 1 200635300 200635300 C T DDX59 Missense_Mutation p.G190E 0.43 tolerated(0.29) possibly_damaging(0.725) TCGA-06-5416-01 1 20066397 20066397 C T TMCO4 Missense_Mutation p.D367N 0.27 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 20066398 20066398 G A TMCO4 Silent p.I366I 0.21 TCGA-06-5416-01 1 200817527 200817527 G A CAMSAP2 Missense_Mutation p.E544K 0.21 deleterious(0) probably_damaging(0.933) TCGA-06-5416-01 1 200817780 200817780 C T CAMSAP2 Missense_Mutation p.S628L 0.48 deleterious(0) possibly_damaging(0.896) TCGA-06-5416-01 1 20082226 20082226 C G TMCO4 Missense_Mutation p.C139S 0.18 tolerated(0.35) possibly_damaging(0.889) TCGA-06-5416-01 1 200826883 200826883 A T CAMSAP2 Missense_Mutation p.E1378V 0.25 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 1 200827258 200827258 C A CAMSAP2 3'UTR 0.11 TCGA-06-5416-01 1 200843056 200843056 C T GPR25 Silent p.F297F 0.21 TCGA-06-5416-01 1 200867534 200867534 G T C1orf106 Missense_Mutation p.E2D 0.19 tolerated(0.07) possibly_damaging(0.453) TCGA-06-5416-01 1 200969856 200969856 G A KIF21B Silent p.I485I 0.23 TCGA-06-5416-01 1 201016708 201016708 C A CACNA1S Missense_Mutation p.K1496N 0.24 deleterious(0) possibly_damaging(0.905) TCGA-06-5416-01 1 201020250 201020250 C T CACNA1S Nonsense_Mutation p.W1325* 0.16 TCGA-06-5416-01 1 201054595 201054595 G A CACNA1S Silent p.G373G 0.46 TCGA-06-5416-01 1 201061158 201061158 G T CACNA1S Silent p.V161V 0.19 TCGA-06-5416-01 1 201081479 201081479 G A CACNA1S 5'UTR 0.25 TCGA-06-5416-01 1 201195248 201195248 C T IGFN1 Missense_Mutation p.R3595C 0.20 probably_damaging(0.988) TCGA-06-5416-01 1 201196111 201196111 G A IGFN1 Missense_Mutation p.E3630K 0.47 probably_damaging(0.946) TCGA-06-5416-01 1 201282442 201282442 C T PKP1 Missense_Mutation p.A152V 0.44 tolerated(0.08) benign(0.154) TCGA-06-5416-01 1 201287895 201287895 G A PKP1 Missense_Mutation p.V402I 0.26 tolerated(0.07) possibly_damaging(0.683) TCGA-06-5416-01 1 201332430 201332430 G T TNNT2 Silent p.I188I 0.14 TCGA-06-5416-01 1 201382234 201382234 G T TNNI1 Missense_Mutation p.L69M 0.24 deleterious(0.03) probably_damaging(0.995) TCGA-06-5416-01 1 201777945 201777945 C T NAV1 Missense_Mutation p.R1385C 0.42 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 1 201816441 201816441 T G IPO9 Missense_Mutation p.D66E 0.19 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 1 201817697 201817697 C T IPO9 Silent p.V163V 0.41 TCGA-06-5416-01 1 201824011 201824011 C A IPO9 Missense_Mutation p.L291M 0.19 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 1 201835892 201835892 A G IPO9 Missense_Mutation p.T554A 0.38 tolerated(0.19) benign(0.028) TCGA-06-5416-01 1 202092301 202092301 C A GPR37L1 Silent p.P70P 0.20 TCGA-06-5416-01 1 202104600 202104600 G A ARL8A Silent p.L143L 0.19 TCGA-06-5416-01 1 202128693 202128693 C T PTPN7 Intron 0.47 TCGA-06-5416-01 1 202273686 202273686 G T LGR6 Splice_Site p.X333_splice 0.28 TCGA-06-5416-01 1 202276518 202276518 C T LGR6 Silent p.S423S 0.13 TCGA-06-5416-01 1 202391845 202391845 C A PPP1R12B Missense_Mutation p.L174M 0.43 tolerated(0.1) probably_damaging(0.969) TCGA-06-5416-01 1 202406951 202406951 C A PPP1R12B Missense_Mutation p.F419L 0.48 tolerated(0.33) benign(0) TCGA-06-5416-01 1 202407148 202407148 A G PPP1R12B Missense_Mutation p.D485G 0.40 deleterious(0) benign(0.213) TCGA-06-5416-01 1 202532015 202532015 C T PPP1R12B Missense_Mutation p.R873C 0.45 deleterious(0) possibly_damaging(0.899) TCGA-06-5416-01 1 202698156 202698156 T C KDM5B 3'UTR 0.20 TCGA-06-5416-01 1 202705496 202705496 C A KDM5B Missense_Mutation p.D1037Y 0.22 deleterious(0) probably_damaging(0.949) TCGA-06-5416-01 1 202709911 202709911 G A KDM5B Missense_Mutation p.T992M 0.47 deleterious(0.01) benign(0.028) TCGA-06-5416-01 1 202711865 202711865 G A KDM5B Nonsense_Mutation p.R798* 0.49 TCGA-06-5416-01 1 202843167 202843167 C T RABIF 3'Flank 0.40 TCGA-06-5416-01 1 202850139 202850139 G T RABIF Missense_Mutation p.F113L 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-06-5416-01 1 202861669 202861669 C T KLHL12 Missense_Mutation p.E567K 0.23 tolerated_low_confidence(0.1) benign(0.001) TCGA-06-5416-01 1 202861735 202861735 C T KLHL12 Missense_Mutation p.D545N 0.43 tolerated(1) benign(0.021) TCGA-06-5416-01 1 203033130 203033130 C T PPFIA4 Nonsense_Mutation p.R511* 0.48 TCGA-06-5416-01 1 203098306 203098306 C A ADORA1 Missense_Mutation p.L113I 0.50 tolerated(0.51) benign(0.006) TCGA-06-5416-01 1 203134708 203134708 G A ADORA1 Missense_Mutation p.D221N 0.21 tolerated(0.28) probably_damaging(0.986) TCGA-06-5416-01 1 203134743 203134743 C T ADORA1 Silent p.I232I 0.40 TCGA-06-5416-01 1 203141154 203141154 G A MYBPH Missense_Mutation p.R175C 0.38 deleterious(0.04) benign(0.436) TCGA-06-5416-01 1 203143669 203143669 G A MYBPH Missense_Mutation p.R133W 0.32 deleterious(0.02) probably_damaging(0.99) TCGA-06-5416-01 1 203311516 203311516 G A FMOD Silent p.A362A 0.50 TCGA-06-5416-01 1 203467895 203467895 C T OPTC Missense_Mutation p.R153W 0.19 deleterious(0.01) probably_damaging(0.93) TCGA-06-5416-01 1 203676344 203676344 C A ATP2B4 Missense_Mutation p.S436Y 0.19 deleterious(0) probably_damaging(0.923) TCGA-06-5416-01 1 203696653 203696653 G A ATP2B4 Missense_Mutation p.R1088Q 0.18 deleterious(0.01) possibly_damaging(0.559) TCGA-06-5416-01 1 203696664 203696664 C A ATP2B4 Missense_Mutation p.L1092I 0.38 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 203799300 203799300 G A ZC3H11A Silent p.K223K 0.24 TCGA-06-5416-01 1 204006629 204006629 C T LINC00303 RNA 0.20 TCGA-06-5416-01 1 204115868 204115868 C A ETNK2 Missense_Mutation p.K181N 0.44 deleterious(0.02) probably_damaging(0.944) TCGA-06-5416-01 1 204129700 204129700 C A REN Missense_Mutation p.Q160H 0.16 deleterious(0) benign(0.013) TCGA-06-5416-01 1 204167510 204167510 A G GOLT1A 3'UTR 0.41 TCGA-06-5416-01 1 20417303 20417303 C T PLA2G5 3'UTR 0.19 TCGA-06-5416-01 1 204218017 204218017 G A PLEKHA6 Nonsense_Mutation p.R586* 0.47 TCGA-06-5416-01 1 204226972 204226972 G A PLEKHA6 Missense_Mutation p.R345C 0.35 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 1 204236643 204236643 G A PLEKHA6 Silent p.R80R 0.43 TCGA-06-5416-01 1 204378867 204378867 G A PPP1R15B Missense_Mutation p.S558L 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 204415134 204415134 C A PIK3C2B Missense_Mutation p.K876N 0.24 tolerated(0.24) benign(0.077) TCGA-06-5416-01 1 204494700 204494700 G T MDM4 Missense_Mutation p.R18S 0.38 deleterious(0.04) possibly_damaging(0.493) TCGA-06-5416-01 1 20466008 20466008 G A PLA2G2F Missense_Mutation p.G30R 0.23 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 1 204924008 204924008 G A NFASC Missense_Mutation p.G155D 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 204926891 204926891 G A NFASC Missense_Mutation p.A215T 0.24 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 1 204944508 204944508 C T NFASC Silent p.S556S 0.43 TCGA-06-5416-01 1 204949519 204949519 A C NFASC Missense_Mutation p.D733A 0.18 tolerated(0.24) possibly_damaging(0.675) TCGA-06-5416-01 1 205033448 205033448 A G CNTN2 Splice_Site p.X414_splice 0.21 TCGA-06-5416-01 1 205041619 205041619 C T CNTN2 Nonsense_Mutation p.R914* 0.21 TCGA-06-5416-01 1 205068177 205068177 C A RBBP5 Nonsense_Mutation p.E346* 0.31 TCGA-06-5416-01 1 205156739 205156739 C T DSTYK Missense_Mutation p.R154H 0.50 tolerated(0.17) benign(0.006) TCGA-06-5416-01 1 20517485 20517485 G T UBXN10 Missense_Mutation p.S144I 0.47 tolerated(0.06) possibly_damaging(0.678) TCGA-06-5416-01 1 205350897 205350897 C A LEMD1 Missense_Mutation p.E145D 0.20 tolerated(0.5) benign(0.217) TCGA-06-5416-01 1 205497197 205497197 T C CDK18 Missense_Mutation p.V322A 0.20 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 1 205589595 205589595 C T ELK4 Silent p.T193T 0.42 TCGA-06-5416-01 1 205589731 205589731 G A ELK4 Missense_Mutation p.S148F 0.32 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 1 205628519 205628519 G A SLC45A3 Missense_Mutation p.S502F 0.44 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 1 205779276 205779276 G A SLC41A1 Silent p.I98I 0.44 TCGA-06-5416-01 1 205883955 205883955 G T SLC26A9 3'UTR 0.20 TCGA-06-5416-01 1 206225250 206225250 C A AVPR1B Missense_Mutation p.N270K 0.23 tolerated(1) benign(0.005) TCGA-06-5416-01 1 206225298 206225298 C T AVPR1B Silent p.I286I 0.43 TCGA-06-5416-01 1 206239531 206239531 C T C1orf186 Missense_Mutation p.E123K 0.17 tolerated(0.7) benign(0.083) TCGA-06-5416-01 1 206317584 206317584 C T CTSE Missense_Mutation p.T3M 0.19 tolerated(0.23) possibly_damaging(0.882) TCGA-06-5416-01 1 206319161 206319161 G A CTSE Missense_Mutation p.D96N 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 206328848 206328848 C T CTSE Silent p.P305P 0.41 TCGA-06-5416-01 1 206566073 206566073 G A SRGAP2 Missense_Mutation p.A86T 0.13 tolerated(1) benign(0.044) TCGA-06-5416-01 1 206667320 206667320 G A IKBKE Missense_Mutation p.E705K 0.48 deleterious(0) benign(0.063) TCGA-06-5416-01 1 206681269 206681269 G T RASSF5 Missense_Mutation p.D112Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 206822133 206822133 C A DYRK3 Silent p.L530L 0.37 TCGA-06-5416-01 1 206856356 206856356 G A MAPKAPK2 5'Flank 0.30 TCGA-06-5416-01 1 207073697 207073697 G A IL24 Missense_Mutation p.V101I 0.44 tolerated(0.18) benign(0.146) TCGA-06-5416-01 1 207078364 207078364 T C FAIM3 Nonstop_Mutation p.*391Wext*52 0.39 TCGA-06-5416-01 1 207105121 207105121 T C PIGR Missense_Mutation p.T679A 0.49 deleterious(0.04) possibly_damaging(0.52) TCGA-06-5416-01 1 207107897 207107897 G A PIGR Missense_Mutation p.R525W 0.14 deleterious(0) probably_damaging(0.928) TCGA-06-5416-01 1 207131850 207131850 C A FCAMR 3'UTR 0.21 TCGA-06-5416-01 1 207195401 207195401 G T C1orf116 Missense_Mutation p.P570T 0.13 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 207195932 207195932 G A C1orf116 Missense_Mutation p.P393S 0.49 tolerated(0.05) benign(0.023) TCGA-06-5416-01 1 207235897 207235897 G T PFKFB2 Intron 0.41 TCGA-06-5416-01 1 207242857 207242857 G A PFKFB2 Missense_Mutation p.R359Q 0.23 probably_damaging(0.999) TCGA-06-5416-01 1 207495880 207495880 G A CD55 Missense_Mutation p.S85N 0.20 tolerated(1) benign(0.006) TCGA-06-5416-01 1 207639925 207639925 C A CR2 Missense_Mutation p.S38Y 0.20 tolerated(0.17) benign(0.025) TCGA-06-5416-01 1 207643324 207643324 C T CR2 Nonsense_Mutation p.R368* 0.17 TCGA-06-5416-01 1 207646379 207646379 C T CR2 Silent p.Y611Y 0.21 TCGA-06-5416-01 1 207646473 207646473 C T CR2 Missense_Mutation p.R643C 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 207669626 207669626 C A CR1 Missense_Mutation p.S5Y 0.18 tolerated_low_confidence(0.14) possibly_damaging(0.51) TCGA-06-5416-01 1 207737316 207737316 C A CR1 Missense_Mutation p.L1232I 0.32 tolerated(0.05) possibly_damaging(0.59) TCGA-06-5416-01 1 207741187 207741187 C A CR1 Missense_Mutation p.P1324H 0.17 deleterious(0.01) probably_damaging(0.921) TCGA-06-5416-01 1 207751420 207751420 G T CR1 Missense_Mutation p.R1603I 0.35 deleterious(0) benign(0.204) TCGA-06-5416-01 1 207753897 207753897 C T CR1 Missense_Mutation p.R1719C 0.42 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 1 207753947 207753947 C A CR1 Silent p.V1735V 0.17 TCGA-06-5416-01 1 207762107 207762107 C T CR1 Missense_Mutation p.S1933F 0.25 deleterious(0.01) probably_damaging(0.964) TCGA-06-5416-01 1 207793392 207793392 C G CR1 Missense_Mutation p.L2412V 0.30 deleterious(0.02) benign(0.19) TCGA-06-5416-01 1 208062058 208062058 C T CD34 Missense_Mutation p.R314H 0.43 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 208219339 208219339 G A PLXNA2 Nonsense_Mutation p.Q1127* 0.13 TCGA-06-5416-01 1 208227860 208227860 G A PLXNA2 Missense_Mutation p.A921V 0.21 deleterious(0.04) benign(0.013) TCGA-06-5416-01 1 20971062 20971062 C T PINK1 Missense_Mutation p.P286S 0.22 deleterious(0.02) probably_damaging(0.913) TCGA-06-5416-01 1 20975093 20975093 C T PINK1 Missense_Mutation p.R407W 0.35 deleterious(0.01) benign(0.192) TCGA-06-5416-01 1 20978949 20978949 C T DDOST Missense_Mutation p.A432T 0.24 deleterious(0.02) possibly_damaging(0.532) TCGA-06-5416-01 1 209797297 209797297 C T LAMB3 Silent p.T675T 0.43 TCGA-06-5416-01 1 20987723 20987723 C A DDOST Nonsense_Mutation p.E58* 0.43 TCGA-06-5416-01 1 209933533 209933533 G T TRAF3IP3 Missense_Mutation p.R50M 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 209956641 209956641 G T C1orf74 Silent p.A113A 0.21 TCGA-06-5416-01 1 209961781 209961781 G A IRF6 Missense_Mutation p.A463V 0.52 deleterious(0.03) benign(0.016) TCGA-06-5416-01 1 209961890 209961890 C A IRF6 Missense_Mutation p.D427Y 0.47 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 1 209963999 209963999 C A IRF6 Nonsense_Mutation p.G301* 0.18 TCGA-06-5416-01 1 209969822 209969822 G A IRF6 Missense_Mutation p.R84C 0.34 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 1 209974661 209974661 G T IRF6 Missense_Mutation p.S33Y 0.22 deleterious(0.02) benign(0.262) TCGA-06-5416-01 1 210016830 210016830 T C DIEXF Missense_Mutation p.Y606H 0.42 deleterious(0.03) possibly_damaging(0.566) TCGA-06-5416-01 1 21014127 21014127 G T KIF17 Silent p.V564V 0.53 TCGA-06-5416-01 1 21014288 21014288 C T KIF17 Missense_Mutation p.D511N 0.39 tolerated_low_confidence(0.36) benign(0.037) TCGA-06-5416-01 1 210412873 210412873 A G SERTAD4 Missense_Mutation p.T71A 0.20 tolerated(0.2) benign(0.004) TCGA-06-5416-01 1 21053512 21053512 G T SH2D5 Silent p.I75I 0.50 TCGA-06-5416-01 1 21071512 21071512 T C HP1BP3 Silent p.A480A 0.42 TCGA-06-5416-01 1 21107026 21107026 G A HP1BP3 5'UTR 0.27 TCGA-06-5416-01 1 211451514 211451514 C A RCOR3 Missense_Mutation p.T191N 0.19 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 1 211529810 211529810 G T TRAF5 Missense_Mutation p.Q126H 0.51 tolerated(0.11) probably_damaging(0.99) TCGA-06-5416-01 1 211546104 211546104 T C TRAF5 3'UTR 0.32 TCGA-06-5416-01 1 211840423 211840423 C A NEK2 Intron 0.25 TCGA-06-5416-01 1 211842608 211842608 C T NEK2 Missense_Mutation p.E278K 0.41 deleterious(0.05) benign(0.007) TCGA-06-5416-01 1 211923195 211923195 G T LPGAT1 3'UTR 0.25 TCGA-06-5416-01 1 212180589 212180589 T G INTS7 Intron 0.43 TCGA-06-5416-01 1 212193518 212193518 C A INTS7 Missense_Mutation p.R106I 0.17 deleterious(0) possibly_damaging(0.84) TCGA-06-5416-01 1 212194548 212194548 C A INTS7 Missense_Mutation p.R34I 0.48 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 212274365 212274365 G A DTL Missense_Mutation p.R678Q 0.18 tolerated(0.74) benign(0.012) TCGA-06-5416-01 1 212502595 212502595 A G PPP2R5A Silent p.T100T 0.07 TCGA-06-5416-01 1 212538361 212538361 C T TMEM206 3'UTR 0.62 TCGA-06-5416-01 1 212538391 212538391 G A TMEM206 3'UTR 0.39 TCGA-06-5416-01 1 212553312 212553312 C T TMEM206 Missense_Mutation p.R249H 0.41 tolerated(0.2) benign(0.04) TCGA-06-5416-01 1 212583764 212583764 C A TMEM206 Intron 0.40 TCGA-06-5416-01 1 21268489 21268489 T G EIF4G3 Missense_Mutation p.E336D 0.46 tolerated_low_confidence(0.1) benign(0.04) TCGA-06-5416-01 1 212798326 212798326 A G FAM71A Missense_Mutation p.E36G 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 212799630 212799630 G T FAM71A Missense_Mutation p.D471Y 0.50 deleterious(0) possibly_damaging(0.781) TCGA-06-5416-01 1 213186616 213186616 G T ANGEL2 Nonsense_Mutation p.Y68* 0.18 TCGA-06-5416-01 1 213224671 213224671 G T RPS6KC1 5'UTR 0.27 TCGA-06-5416-01 1 213415090 213415090 G A RPS6KC1 Silent p.G757G 0.43 TCGA-06-5416-01 1 213415196 213415196 C T RPS6KC1 Missense_Mutation p.P793S 0.19 tolerated(0.98) benign(0.001) TCGA-06-5416-01 1 214170315 214170315 G T PROX1 Missense_Mutation p.R146M 0.43 tolerated(0.06) probably_damaging(0.934) TCGA-06-5416-01 1 214209147 214209147 G A PROX1 Silent p.P728P 0.36 TCGA-06-5416-01 1 214557750 214557750 A C PTPN14 Missense_Mutation p.L483R 0.45 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 1 214571330 214571330 G A PTPN14 Silent p.N228N 0.46 TCGA-06-5416-01 1 214794040 214794040 G A CENPF Missense_Mutation p.D206N 0.40 probably_damaging(0.959) TCGA-06-5416-01 1 214819447 214819447 G T CENPF Missense_Mutation p.E2178D 0.21 possibly_damaging(0.513) TCGA-06-5416-01 1 214819660 214819660 G T CENPF Missense_Mutation p.Q2249H 0.19 possibly_damaging(0.847) TCGA-06-5416-01 1 214819769 214819769 G T CENPF Nonsense_Mutation p.E2286* 0.23 TCGA-06-5416-01 1 214828682 214828682 G T CENPF Missense_Mutation p.E2807D 0.22 benign(0.215) TCGA-06-5416-01 1 214830287 214830287 G A CENPF Missense_Mutation p.D2833N 0.19 benign(0.062) TCGA-06-5416-01 1 215781456 215781456 G T KCTD3 Missense_Mutation p.K469N 0.19 deleterious(0.02) probably_damaging(0.997) TCGA-06-5416-01 1 215820870 215820870 T G USH2A Missense_Mutation p.K4929Q 0.44 benign(0.273) TCGA-06-5416-01 1 215953237 215953237 C T USH2A Silent p.G3629G 0.22 TCGA-06-5416-01 1 215960020 215960020 G A USH2A Missense_Mutation p.S3460F 0.38 probably_damaging(0.957) TCGA-06-5416-01 1 216040451 216040451 C A USH2A Nonsense_Mutation p.E2915* 0.39 TCGA-06-5416-01 1 216172362 216172362 C T USH2A Missense_Mutation p.R2175H 0.35 benign(0.013) TCGA-06-5416-01 1 216371663 216371663 C A USH2A Nonsense_Mutation p.E1359* 0.20 TCGA-06-5416-01 1 216373008 216373008 C A USH2A Nonsense_Mutation p.E1258* 0.22 TCGA-06-5416-01 1 216496835 216496835 C T USH2A Missense_Mutation p.E511K 0.22 probably_damaging(0.997) TCGA-06-5416-01 1 216824381 216824381 G A ESRRG Missense_Mutation p.R180C 0.25 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 217822300 217822300 C T SPATA17 Missense_Mutation p.R49W 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 217915374 217915374 C T SPATA17 Silent p.L151L 0.24 TCGA-06-5416-01 1 218475874 218475874 G T RRP15 Missense_Mutation p.K126N 0.19 deleterious(0.03) benign(0.378) TCGA-06-5416-01 1 218578555 218578555 C T TGFB2 Nonsense_Mutation p.R159* 0.40 TCGA-06-5416-01 1 218578566 218578566 C T TGFB2 Silent p.V162V 0.20 TCGA-06-5416-01 1 218609370 218609371 - A TGFB2 Frame_Shift_Ins p.N302Kfs*19 0.36 TCGA-06-5416-01 1 21903970 21903970 G T ALPL Silent p.A468A 0.40 TCGA-06-5416-01 1 21928228 21928228 G A RAP1GAP Missense_Mutation p.S598L 0.42 deleterious(0.01) benign(0.086) TCGA-06-5416-01 1 219366582 219366582 G T LYPLAL1 Missense_Mutation p.R117M 0.40 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 1 219385087 219385087 T G LYPLAL1 3'UTR 0.23 TCGA-06-5416-01 1 220157598 220157598 A G EPRS Silent p.L1014L 0.38 TCGA-06-5416-01 1 220161961 220161961 G A EPRS Missense_Mutation p.R916W 0.41 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 220232282 220232282 C T BPNT1 Silent p.K277K 0.38 TCGA-06-5416-01 1 220276808 220276808 T C IARS2 Missense_Mutation p.S324P 0.40 deleterious(0.04) possibly_damaging(0.756) TCGA-06-5416-01 1 220326592 220326592 C A RAB3GAP2 Missense_Mutation p.D1268Y 0.45 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 220366581 220366581 C T RAB3GAP2 Splice_Site p.X424_splice 0.18 TCGA-06-5416-01 1 220440185 220440185 T C RAB3GAP2 Intron 0.39 TCGA-06-5416-01 1 220752712 220752712 G A MARK1 Missense_Mutation p.G23E 0.23 tolerated(0.05) benign(0.014) TCGA-06-5416-01 1 220777433 220777433 C T MARK1 Missense_Mutation p.A150V 0.32 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 1 220791999 220791999 C T MARK1 Nonsense_Mutation p.R271* 0.20 TCGA-06-5416-01 1 22156070 22156070 G A HSPG2 Missense_Mutation p.S3933L 0.11 benign(0.336) TCGA-06-5416-01 1 22156611 22156611 G T HSPG2 Intron 0.69 TCGA-06-5416-01 1 22161367 22161367 C T HSPG2 Missense_Mutation p.E3509K 0.45 probably_damaging(1) TCGA-06-5416-01 1 22173935 22173935 G A HSPG2 Silent p.G2692G 0.21 TCGA-06-5416-01 1 22175411 22175411 G A HSPG2 Silent p.I2520I 0.40 TCGA-06-5416-01 1 22183875 22183875 G T HSPG2 Missense_Mutation p.A1766D 0.58 possibly_damaging(0.597) TCGA-06-5416-01 1 221913104 221913104 G A DUSP10 5'UTR 0.47 TCGA-06-5416-01 1 22192295 22192295 G A HSPG2 Missense_Mutation p.A1410V 0.44 probably_damaging(0.98) TCGA-06-5416-01 1 22202376 22202376 A C HSPG2 Missense_Mutation p.F1055V 0.49 benign(0.062) TCGA-06-5416-01 1 222700357 222700357 C T HHIPL2 Missense_Mutation p.A587T 0.27 tolerated(0.1) possibly_damaging(0.793) TCGA-06-5416-01 1 222801671 222801671 C T MIA3 Missense_Mutation p.P370L 0.42 tolerated(0.22) benign(0.007) TCGA-06-5416-01 1 222835456 222835456 C A MIA3 Silent p.P1724P 0.23 TCGA-06-5416-01 1 222843241 222843241 C A AIDA Missense_Mutation p.K305N 0.19 deleterious(0.02) benign(0.308) TCGA-06-5416-01 1 222843479 222843479 C A AIDA Nonsense_Mutation p.E274* 0.14 TCGA-06-5416-01 1 222900586 222900586 C A BROX Missense_Mutation p.F219L 0.39 tolerated(1) benign(0.012) TCGA-06-5416-01 1 223165439 223165439 C A DISP1 Missense_Mutation p.F292L 0.20 tolerated(0.25) benign(0.348) TCGA-06-5416-01 1 223168270 223168270 G A DISP1 Silent p.E311E 0.18 TCGA-06-5416-01 1 223177512 223177512 T G DISP1 Missense_Mutation p.L925V 0.18 deleterious(0.03) benign(0.325) TCGA-06-5416-01 1 223178868 223178868 C A DISP1 Missense_Mutation p.L1377I 0.43 tolerated_low_confidence(0.43) benign(0.002) TCGA-06-5416-01 1 223283654 223283654 G A TLR5 3'UTR 0.45 TCGA-06-5416-01 1 223284333 223284333 C T TLR5 Missense_Mutation p.D681N 0.25 tolerated(0.41) benign(0.003) TCGA-06-5416-01 1 223284999 223284999 G A TLR5 Missense_Mutation p.R459C 0.39 tolerated(0.06) probably_damaging(0.951) TCGA-06-5416-01 1 223285823 223285823 A C TLR5 Missense_Mutation p.L184R 0.44 tolerated(0.58) benign(0.002) TCGA-06-5416-01 1 22336336 22336336 G A CELA3A Missense_Mutation p.D261N 0.17 tolerated(0.1) benign(0.041) TCGA-06-5416-01 1 223949891 223949891 G A CAPN2 Missense_Mutation p.D524N 0.14 tolerated(0.43) benign(0) TCGA-06-5416-01 1 223987700 223987700 C T TP53BP2 Silent p.P462P 0.23 TCGA-06-5416-01 1 223991095 223991095 C T TP53BP2 Missense_Mutation p.A237T 0.46 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 224444784 224444784 G A NVL Intron 0.44 TCGA-06-5416-01 1 22446608 22446608 G T WNT4 Missense_Mutation p.H331N 0.22 deleterious(0.03) benign(0.178) TCGA-06-5416-01 1 22448066 22448066 G T WNT4 Missense_Mutation p.T106N 0.23 deleterious(0.01) probably_damaging(0.97) TCGA-06-5416-01 1 224517785 224517785 C T NVL Silent p.Q15Q 0.25 TCGA-06-5416-01 1 22456326 22456326 C T WNT4 Silent p.S32S 0.17 TCGA-06-5416-01 1 224577488 224577488 A C WDR26 3'UTR 0.44 TCGA-06-5416-01 1 225609909 225609909 C T LBR Missense_Mutation p.R79Q 0.37 deleterious(0.02) possibly_damaging(0.773) TCGA-06-5416-01 1 225718276 225718276 T G ENAH Missense_Mutation p.E138D 0.42 tolerated(0.36) unknown(0) TCGA-06-5416-01 1 226037742 226037742 G C TMEM63A Missense_Mutation p.H648D 0.24 deleterious(0) probably_damaging(0.937) TCGA-06-5416-01 1 226041407 226041407 G A TMEM63A Missense_Mutation p.R574W 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 226074603 226074603 G A LEFTY1 Missense_Mutation p.P309S 0.39 deleterious(0.01) possibly_damaging(0.878) TCGA-06-5416-01 1 226075160 226075160 C T LEFTY1 Missense_Mutation p.A226T 0.47 tolerated(0.37) benign(0.003) TCGA-06-5416-01 1 226076737 226076737 G T LEFTY1 Silent p.L10L 0.39 TCGA-06-5416-01 1 226124994 226124994 G T LEFTY2 3'UTR 0.59 TCGA-06-5416-01 1 226125034 226125034 G A LEFTY2 3'UTR 0.30 TCGA-06-5416-01 1 226125274 226125274 G A LEFTY2 Missense_Mutation p.S323L 0.21 deleterious(0.03) probably_damaging(0.957) TCGA-06-5416-01 1 226438585 226438585 T G LIN9 Missense_Mutation p.E374D 0.15 tolerated(0.42) benign(0.009) TCGA-06-5416-01 1 227069692 227069692 G A PSEN2 Silent p.P28P 0.19 TCGA-06-5416-01 1 227076674 227076674 G A PSEN2 Silent p.A237A 0.50 TCGA-06-5416-01 1 227076734 227076734 C T PSEN2 Silent p.G257G 0.13 TCGA-06-5416-01 1 227076747 227076747 T C PSEN2 Missense_Mutation p.Y262H 0.39 deleterious(0.02) probably_damaging(0.942) TCGA-06-5416-01 1 227078988 227078988 T C PSEN2 Missense_Mutation p.V299A 0.10 tolerated(0.22) benign(0.292) TCGA-06-5416-01 1 227227872 227227872 G T CDC42BPA Silent p.S1018S 0.27 TCGA-06-5416-01 1 227842089 227842089 T G ZNF678 Missense_Mutation p.D46E 0.45 tolerated(0.06) possibly_damaging(0.49) TCGA-06-5416-01 1 227843046 227843046 T A ZNF678 Silent p.T365T 0.46 TCGA-06-5416-01 1 227935863 227935863 C T SNAP47 Silent p.H187H 0.24 TCGA-06-5416-01 1 227947039 227947039 C T SNAP47 Missense_Mutation p.R326C 0.18 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 1 227947142 227947142 G T SNAP47 Missense_Mutation p.R360I 0.36 tolerated(0.19) benign(0.15) TCGA-06-5416-01 1 228003921 228003921 C T PRSS38 Silent p.Y93Y 0.34 TCGA-06-5416-01 1 228112070 228112070 G A WNT9A Silent p.I128I 0.46 TCGA-06-5416-01 1 228113111 228113111 G A WNT9A Missense_Mutation p.R69W 0.56 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 228345684 228345684 G A GJC2 Silent p.S75S 0.48 TCGA-06-5416-01 1 22837757 22837757 C T ZBTB40 Missense_Mutation p.A640V 0.45 tolerated(0.05) unknown(0) TCGA-06-5416-01 1 228402008 228402008 C T OBSCN Silent p.G464G 0.44 TCGA-06-5416-01 1 228444517 228444517 C T OBSCN Missense_Mutation p.A1584V 0.46 probably_damaging(0.986) TCGA-06-5416-01 1 228447298 228447298 C T OBSCN Missense_Mutation p.A1653V 0.18 benign(0.003) TCGA-06-5416-01 1 228456313 228456313 C T OBSCN Silent p.C1832C 0.50 TCGA-06-5416-01 1 228461691 228461691 C T OBSCN Silent p.S2161S 0.44 TCGA-06-5416-01 1 228462401 228462401 C T OBSCN Missense_Mutation p.L2313F 0.48 probably_damaging(0.992) TCGA-06-5416-01 1 228468483 228468483 G A OBSCN Missense_Mutation p.R3157Q 0.11 benign(0.093) TCGA-06-5416-01 1 228474563 228474563 G A OBSCN Missense_Mutation p.D3552N 0.16 probably_damaging(0.95) TCGA-06-5416-01 1 228475463 228475463 C T OBSCN Missense_Mutation p.R3634C 0.48 probably_damaging(0.988) TCGA-06-5416-01 1 228475488 228475488 C T OBSCN Missense_Mutation p.A3642V 0.42 possibly_damaging(0.811) TCGA-06-5416-01 1 228475978 228475978 C T OBSCN Missense_Mutation p.S3772L 0.36 benign(0.064) TCGA-06-5416-01 1 228476569 228476569 C A OBSCN Missense_Mutation p.S3869Y 0.52 probably_damaging(0.952) TCGA-06-5416-01 1 228482739 228482739 T C OBSCN Missense_Mutation p.V4314A 0.20 possibly_damaging(0.681) TCGA-06-5416-01 1 228487065 228487065 G T OBSCN Missense_Mutation p.R4439M 0.15 possibly_damaging(0.689) TCGA-06-5416-01 1 228494968 228494968 C A OBSCN Missense_Mutation p.P5025T 0.18 probably_damaging(0.968) TCGA-06-5416-01 1 228495060 228495060 C T OBSCN Silent p.A5055A 0.38 TCGA-06-5416-01 1 228495994 228495994 C T OBSCN Silent p.L5174L 0.14 TCGA-06-5416-01 1 22850933 22850933 C T ZBTB40 Missense_Mutation p.A1174V 0.14 tolerated(1) benign(0.011) TCGA-06-5416-01 1 228523939 228523939 C T OBSCN Missense_Mutation p.A6459V 0.20 benign(0.036) TCGA-06-5416-01 1 228527765 228527765 C T OBSCN Missense_Mutation p.S6750L 0.27 possibly_damaging(0.503) TCGA-06-5416-01 1 228548141 228548141 C T OBSCN Intron 0.24 TCGA-06-5416-01 1 228550291 228550291 C T OBSCN Nonsense_Mutation p.R7183* 0.42 TCGA-06-5416-01 1 228550354 228550354 T C OBSCN Missense_Mutation p.S7204P 0.50 benign(0.007) TCGA-06-5416-01 1 228559751 228559751 G T OBSCN Missense_Mutation p.S8048I 0.44 benign(0.173) TCGA-06-5416-01 1 228560663 228560663 G A OBSCN Missense_Mutation p.S8352N 0.49 benign(0.15) TCGA-06-5416-01 1 228564816 228564816 G A OBSCN Silent p.K8658K 0.53 TCGA-06-5416-01 1 228594158 228594158 G T TRIM11 Missense_Mutation p.F35L 0.29 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 1 228596435 228596435 C T TRIM17 Missense_Mutation p.A301T 0.42 deleterious(0) benign(0.062) TCGA-06-5416-01 1 228612581 228612581 C T HIST3H3 3'UTR 0.27 TCGA-06-5416-01 1 228613003 228613003 C T HIST3H3 Silent p.A8A 0.20 TCGA-06-5416-01 1 22895825 22895825 G A EPHA8 Nonsense_Mutation p.W46* 0.22 TCGA-06-5416-01 1 22903343 22903343 G A EPHA8 Missense_Mutation p.G265S 0.31 deleterious(0) possibly_damaging(0.836) TCGA-06-5416-01 1 229431640 229431640 C T RAB4A Silent p.L91L 0.06 TCGA-06-5416-01 1 229567812 229567812 T C ACTA1 Missense_Mutation p.D246G 0.45 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-06-5416-01 1 229619875 229619875 G T NUP133 Silent p.T506T 0.15 TCGA-06-5416-01 1 22964211 22964211 G A C1QA Silent p.G34G 0.26 TCGA-06-5416-01 1 22965435 22965435 C T C1QA Silent p.L91L 0.30 TCGA-06-5416-01 1 229685005 229685005 G A ABCB10 Missense_Mutation p.R232C 0.42 deleterious(0) possibly_damaging(0.811) TCGA-06-5416-01 1 229772755 229772755 C T URB2 Missense_Mutation p.P799S 0.37 tolerated(0.53) benign(0.079) TCGA-06-5416-01 1 22987345 22987345 G T C1QB Missense_Mutation p.E76D 0.37 tolerated(0.08) probably_damaging(0.943) TCGA-06-5416-01 1 230372462 230372462 C T GALNT2 Nonsense_Mutation p.R200* 0.44 TCGA-06-5416-01 1 230486801 230486801 A C PGBD5 Missense_Mutation p.F197C 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-06-5416-01 1 230838902 230838902 C T AGT Silent p.P481P 0.39 TCGA-06-5416-01 1 230845818 230845818 C T AGT Missense_Mutation p.G260E 0.43 tolerated(0.37) benign(0.249) TCGA-06-5416-01 1 230846090 230846090 C T AGT Silent p.K169K 0.18 TCGA-06-5416-01 1 230891088 230891088 C T CAPN9 Silent p.I73I 0.42 TCGA-06-5416-01 1 230979582 230979582 C T C1orf198 Missense_Mutation p.A149T 0.49 tolerated(0.62) benign(0.004) TCGA-06-5416-01 1 231067112 231067112 A C TTC13 Missense_Mutation p.V411G 0.42 deleterious(0) possibly_damaging(0.489) TCGA-06-5416-01 1 231076236 231076236 G A TTC13 Missense_Mutation p.P247S 0.23 deleterious(0.01) possibly_damaging(0.589) TCGA-06-5416-01 1 231081149 231081149 T G TTC13 Missense_Mutation p.K189Q 0.20 tolerated(0.06) possibly_damaging(0.621) TCGA-06-5416-01 1 23111440 23111440 G A EPHB2 Missense_Mutation p.A228T 0.46 tolerated(0.53) benign(0.015) TCGA-06-5416-01 1 231337160 231337160 C T TRIM67 Silent p.G477G 0.23 TCGA-06-5416-01 1 231374723 231374723 C A C1orf131 Missense_Mutation p.E110D 0.16 tolerated(0.24) benign(0.017) TCGA-06-5416-01 1 231398545 231398545 C A GNPAT Missense_Mutation p.S172Y 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 231409723 231409723 C T GNPAT Missense_Mutation p.T553M 0.42 tolerated(0.11) benign(0.011) TCGA-06-5416-01 1 231471721 231471721 C A EXOC8 Nonsense_Mutation p.E591* 0.22 TCGA-06-5416-01 1 231472063 231472063 C T EXOC8 Missense_Mutation p.D477N 0.23 tolerated(0.48) benign(0.015) TCGA-06-5416-01 1 231472425 231472425 G A EXOC8 Missense_Mutation p.A356V 0.23 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 1 231474289 231474289 G A SPRTN Missense_Mutation p.D54N 0.38 deleterious(0.04) possibly_damaging(0.486) TCGA-06-5416-01 1 231829794 231829794 G A DISC1 Missense_Mutation p.S97N 0.48 tolerated(0.08) benign(0.126) TCGA-06-5416-01 1 231858399 231858399 T C DISC1 Intron 0.38 TCGA-06-5416-01 1 231906584 231906584 G T DISC1 Nonsense_Mutation p.E468* 0.36 TCGA-06-5416-01 1 23219457 23219457 C A EPHB2 Silent p.I503I 0.23 TCGA-06-5416-01 1 23232511 23232511 T C EPHB2 Silent p.P600P 0.37 TCGA-06-5416-01 1 23239077 23239077 C A EPHB2 Missense_Mutation p.S947Y 0.21 deleterious(0.04) possibly_damaging(0.891) TCGA-06-5416-01 1 23240354 23240354 C T EPHB2 3'UTR 0.19 TCGA-06-5416-01 1 232538164 232538164 G A SIPA1L2 Nonsense_Mutation p.R1666* 0.40 TCGA-06-5416-01 1 232574868 232574868 T C SIPA1L2 Missense_Mutation p.I1339M 0.15 tolerated(0.25) benign(0.181) TCGA-06-5416-01 1 232600645 232600645 G T SIPA1L2 Missense_Mutation p.L921I 0.27 tolerated(0.37) benign(0.033) TCGA-06-5416-01 1 232619649 232619649 T C SIPA1L2 Missense_Mutation p.M624V 0.48 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 1 232651152 232651152 G A SIPA1L2 5'UTR 0.17 TCGA-06-5416-01 1 2328573 2328573 G T RER1 Missense_Mutation p.D34Y 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 232940839 232940839 C A MAP10 Missense_Mutation p.L24I 0.47 possibly_damaging(0.567) TCGA-06-5416-01 1 233136229 233136229 G A PCNXL2 Missense_Mutation p.A1717V 0.19 deleterious(0.01) possibly_damaging(0.581) TCGA-06-5416-01 1 233136239 233136239 G T PCNXL2 Missense_Mutation p.L1714I 0.24 deleterious(0) probably_damaging(0.934) TCGA-06-5416-01 1 233297044 233297044 G A PCNXL2 Silent p.S1113S 0.27 TCGA-06-5416-01 1 233397868 233397868 G A PCNXL2 Nonsense_Mutation p.R135* 0.21 TCGA-06-5416-01 1 23409676 23409676 T C KDM1A Missense_Mutation p.I817T 0.46 tolerated(0.63) benign(0.113) TCGA-06-5416-01 1 23417709 23417709 C T LUZP1 Missense_Mutation p.A1016T 0.38 tolerated(0.1) benign(0.018) TCGA-06-5416-01 1 23417939 23417939 C T LUZP1 Missense_Mutation p.R939Q 0.15 tolerated_low_confidence(0.27) benign(0.01) TCGA-06-5416-01 1 2341887 2341887 G A PEX10 Missense_Mutation p.A39V 0.44 deleterious(0) benign(0.342) TCGA-06-5416-01 1 23420254 23420254 A C LUZP1 Silent p.S167S 0.19 TCGA-06-5416-01 1 234565018 234565018 T G TARBP1 Missense_Mutation p.K975T 0.52 deleterious(0) possibly_damaging(0.743) TCGA-06-5416-01 1 234569301 234569301 C T TARBP1 Missense_Mutation p.R750H 0.43 tolerated(0.07) possibly_damaging(0.479) TCGA-06-5416-01 1 234582586 234582586 C A TARBP1 Missense_Mutation p.L699F 0.20 tolerated(0.18) probably_damaging(0.999) TCGA-06-5416-01 1 235324206 235324206 A G RBM34 Splice_Site p.X76_splice 0.36 TCGA-06-5416-01 1 235357466 235357466 G A ARID4B Missense_Mutation p.R663W 0.14 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 235397755 235397755 A C ARID4B Missense_Mutation p.L213R 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 1 235613400 235613400 C T B3GALNT2 3'UTR 0.48 TCGA-06-5416-01 1 235618994 235618994 G A B3GALNT2 Missense_Mutation p.T343I 0.47 deleterious(0) possibly_damaging(0.459) TCGA-06-5416-01 1 235715192 235715192 A G GNG4 3'UTR 0.28 TCGA-06-5416-01 1 235826060 235826060 G T LYST 3'UTR 0.34 TCGA-06-5416-01 1 235860554 235860554 T G LYST Missense_Mutation p.K3465Q 0.47 deleterious(0.02) probably_damaging(0.994) TCGA-06-5416-01 1 235904820 235904820 G A LYST Missense_Mutation p.P2754S 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 1 235956864 235956864 C A LYST Missense_Mutation p.R1352I 0.44 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 1 235969798 235969798 C A LYST Nonsense_Mutation p.E880* 0.16 TCGA-06-5416-01 1 236141094 236141094 C T NID1 3'UTR 0.16 TCGA-06-5416-01 1 236141260 236141260 G A NID1 Silent p.G1217G 0.51 TCGA-06-5416-01 1 236175236 236175236 G A NID1 Missense_Mutation p.R838C 0.40 deleterious(0.01) possibly_damaging(0.846) TCGA-06-5416-01 1 236557755 236557755 G A EDARADD Missense_Mutation p.R4K 0.14 tolerated_low_confidence(0.21) benign(0.069) TCGA-06-5416-01 1 236708109 236708109 G A LGALS8 Missense_Mutation p.R275H 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-06-5416-01 1 236722360 236722360 G A HEATR1 Missense_Mutation p.R1616C 0.42 deleterious(0) probably_damaging(0.921) TCGA-06-5416-01 1 236755390 236755390 A C HEATR1 Missense_Mutation p.V442G 0.18 tolerated(0.55) benign(0.001) TCGA-06-5416-01 1 236760150 236760150 G A HEATR1 Missense_Mutation p.P244S 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 23689317 23689317 T C ZNF436 Silent p.R186R 0.46 TCGA-06-5416-01 1 236920914 236920914 C A ACTN2 Silent p.S761S 0.39 TCGA-06-5416-01 1 237057827 237057827 G A MTR Missense_Mutation p.M1125I 0.23 deleterious(0.02) possibly_damaging(0.668) TCGA-06-5416-01 1 237532850 237532850 G A RYR2 Missense_Mutation p.G109D 0.62 benign(0.039) TCGA-06-5416-01 1 237586430 237586430 G A RYR2 Missense_Mutation p.R296Q 0.18 probably_damaging(0.978) TCGA-06-5416-01 1 23759993 23759993 G T ASAP3 Missense_Mutation p.F684L 0.21 tolerated(0.71) benign(0.001) TCGA-06-5416-01 1 237617811 237617811 G A RYR2 Silent p.E471E 0.24 TCGA-06-5416-01 1 237659930 237659930 G A RYR2 Missense_Mutation p.R694Q 0.39 probably_damaging(0.999) TCGA-06-5416-01 1 23767880 23767880 C A ASAP3 Missense_Mutation p.E278D 0.25 tolerated(0.05) possibly_damaging(0.818) TCGA-06-5416-01 1 237713852 237713852 G T RYR2 Missense_Mutation p.K1025N 0.17 possibly_damaging(0.863) TCGA-06-5416-01 1 237947163 237947163 G T RYR2 Missense_Mutation p.A4051S 0.20 benign(0.241) TCGA-06-5416-01 1 237961376 237961376 A C RYR2 Missense_Mutation p.I4666L 0.32 benign(0.141) TCGA-06-5416-01 1 238048873 238048873 G A ZP4 Silent p.N326N 0.25 TCGA-06-5416-01 1 23842978 23842978 G A E2F2 Silent p.I298I 0.30 TCGA-06-5416-01 1 23955998 23955998 G T MDS2 5'UTR 0.47 TCGA-06-5416-01 1 23965631 23965631 G T MDS2 Missense_Mutation p.E12D 0.13 deleterious_low_confidence(0) benign(0.398) TCGA-06-5416-01 1 240071275 240071275 C T CHRM3 Missense_Mutation p.T175M 0.47 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 1 240071630 240071630 C T CHRM3 Silent p.Y293Y 0.55 TCGA-06-5416-01 1 24021225 24021225 G A RPL11 Missense_Mutation p.D114N 0.22 tolerated(0.1) benign(0.413) TCGA-06-5416-01 1 240635579 240635579 C A FMN2 Intron 0.53 TCGA-06-5416-01 1 240656668 240656668 G A GREM2 Silent p.D36D 0.46 TCGA-06-5416-01 1 24078192 24078192 C T TCEB3 Missense_Mutation p.S392F 0.40 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 1 240964768 240964768 A C RGS7 Missense_Mutation p.F467C 0.21 deleterious(0.01) benign(0.228) TCGA-06-5416-01 1 240978044 240978044 G A RGS7 Missense_Mutation p.R273W 0.41 tolerated(0.15) probably_damaging(0.996) TCGA-06-5416-01 1 24121256 24121256 A G LYPLA2 3'UTR 0.32 TCGA-06-5416-01 1 24124668 24124668 G A GALE Missense_Mutation p.S97L 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 24143985 24143985 G T HMGCL Missense_Mutation p.S78Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 241680542 241680542 G T FH Silent p.G69G 0.46 TCGA-06-5416-01 1 241753391 241753391 G A KMO Silent p.S392S 0.45 TCGA-06-5416-01 1 241797256 241797256 C T CHML Missense_Mutation p.E605K 0.48 deleterious(0) possibly_damaging(0.721) TCGA-06-5416-01 1 241797533 241797533 A G CHML Silent p.C512C 0.24 TCGA-06-5416-01 1 241798330 241798330 G T CHML Missense_Mutation p.L247I 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 241799168 241799168 G T CHML 5'UTR 0.23 TCGA-06-5416-01 1 2418423 2418423 G A PLCH2 Silent p.G271G 0.43 TCGA-06-5416-01 1 24201066 24201066 G A CNR2 Missense_Mutation p.P348S 0.45 tolerated(0.78) benign(0.002) TCGA-06-5416-01 1 242015617 242015617 T G EXO1 Missense_Mutation p.F62C 0.18 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 242052886 242052886 G T EXO1 Missense_Mutation p.R842I 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-06-5416-01 1 2428347 2428347 C T PLCH2 Missense_Mutation p.R645C 0.24 tolerated(0.08) benign(0.049) TCGA-06-5416-01 1 2430242 2430242 G A PLCH2 Silent p.E776E 0.15 TCGA-06-5416-01 1 243328035 243328035 G A CEP170 Missense_Mutation p.S1076F 0.31 deleterious(0) possibly_damaging(0.655) TCGA-06-5416-01 1 243716094 243716094 C T AKT3 Missense_Mutation p.R367Q 0.46 tolerated(0.16) benign(0.206) TCGA-06-5416-01 1 24397678 24397678 C A MYOM3 Nonsense_Mutation p.E1027* 0.35 TCGA-06-5416-01 1 24411100 24411100 C A MYOM3 Missense_Mutation p.A610S 0.40 deleterious(0.02) benign(0.364) TCGA-06-5416-01 1 244218453 244218453 G A ZBTB18 Silent p.S459S 0.39 TCGA-06-5416-01 1 24433598 24433598 G A MYOM3 Missense_Mutation p.R123C 0.59 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 1 244528024 244528024 G T C1orf100 Nonsense_Mutation p.E8* 0.37 TCGA-06-5416-01 1 2445506 2445506 G A PANK4 Missense_Mutation p.R504C 0.23 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 1 24460831 24460831 G A IL22RA1 Missense_Mutation p.S134L 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 244681893 244681893 G T C1orf101 Splice_Site p.X144_splice 0.41 TCGA-06-5416-01 1 24483532 24483532 T C IFNLR1 3'UTR 0.09 TCGA-06-5416-01 1 245020925 245020925 G A HNRNPU Missense_Mutation p.T530I 0.43 deleterious(0) unknown(0) TCGA-06-5416-01 1 245021405 245021405 G A HNRNPU Missense_Mutation p.P468S 0.18 tolerated(0.22) unknown(0) TCGA-06-5416-01 1 245025963 245025963 C T HNRNPU Missense_Mutation p.G254D 0.42 deleterious(0) probably_damaging(0.931) TCGA-06-5416-01 1 245772664 245772664 G A KIF26B Missense_Mutation p.R583H 0.25 deleterious(0.03) unknown(0) TCGA-06-5416-01 1 245850519 245850519 G A KIF26B Missense_Mutation p.A1412T 0.44 tolerated(0.1) unknown(0) TCGA-06-5416-01 1 24663050 24663050 G T GRHL3 Missense_Mutation p.E115D 0.44 tolerated(0.51) benign(0.008) TCGA-06-5416-01 1 246707932 246707932 G A TFB2M Missense_Mutation p.R304C 0.42 deleterious(0.03) benign(0.175) TCGA-06-5416-01 1 24674000 24674000 C T GRHL3 Missense_Mutation p.A529V 0.43 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 247013388 247013388 G A AHCTF1 Missense_Mutation p.R1983C 0.42 deleterious(0.03) benign(0.287) TCGA-06-5416-01 1 247014240 247014240 C T AHCTF1 Missense_Mutation p.E1699K 0.38 deleterious(0) probably_damaging(0.928) TCGA-06-5416-01 1 247014431 247014431 A C AHCTF1 Missense_Mutation p.L1635R 0.23 tolerated(0.36) benign(0.004) TCGA-06-5416-01 1 247065859 247065859 G T AHCTF1 Missense_Mutation p.S371Y 0.40 tolerated(0.73) benign(0.042) TCGA-06-5416-01 1 247076569 247076569 T C AHCTF1 Missense_Mutation p.D183G 0.21 deleterious(0.05) probably_damaging(0.974) TCGA-06-5416-01 1 247150518 247150518 C A ZNF695 Missense_Mutation p.E433D 0.14 deleterious(0.02) benign(0.137) TCGA-06-5416-01 1 247171260 247171260 C A ZNF695 5'UTR 0.25 TCGA-06-5416-01 1 247200791 247200791 G A ZNF670 Missense_Mutation p.S377F 0.18 tolerated(0.66) probably_damaging(0.974) TCGA-06-5416-01 1 247201644 247201644 T C ZNF670 Missense_Mutation p.N93D 0.20 deleterious(0.04) benign(0.396) TCGA-06-5416-01 1 247320311 247320311 G A ZNF124 Missense_Mutation p.P143S 0.13 deleterious(0.02) probably_damaging(0.953) TCGA-06-5416-01 1 247473755 247473755 G A ZNF496 Missense_Mutation p.R219W 0.23 tolerated(0.18) probably_damaging(0.975) TCGA-06-5416-01 1 247587353 247587353 T C NLRP3 Missense_Mutation p.I203T 0.49 tolerated(0.1) benign(0.003) TCGA-06-5416-01 1 247587379 247587379 G A NLRP3 Missense_Mutation p.D212N 0.44 tolerated(0.08) benign(0.005) TCGA-06-5416-01 1 247587557 247587557 G A NLRP3 Missense_Mutation p.S271N 0.45 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 247587562 247587562 G T NLRP3 Missense_Mutation p.G273W 0.45 deleterious(0.01) probably_damaging(0.969) TCGA-06-5416-01 1 247593022 247593022 G A NLRP3 Silent p.T764T 0.17 TCGA-06-5416-01 1 247614805 247614805 G T OR2B11 Silent p.S160S 0.51 TCGA-06-5416-01 1 247654839 247654839 G A OR2W5 RNA 0.44 TCGA-06-5416-01 1 247737546 247737546 G T GCSAML Missense_Mutation p.E90D 0.24 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 1 247752179 247752179 G T OR2G2 Missense_Mutation p.G173V 0.43 deleterious(0.01) possibly_damaging(0.58) TCGA-06-5416-01 1 24776076 24776076 T G NIPAL3 Missense_Mutation p.V167G 0.21 deleterious(0) benign(0.417) TCGA-06-5416-01 1 247769607 247769607 C T OR2G3 Silent p.T240T 0.20 TCGA-06-5416-01 1 247836126 247836126 C A OR13G1 Missense_Mutation p.S73I 0.41 deleterious(0.02) benign(0.231) TCGA-06-5416-01 1 247978792 247978792 G A OR14A16 Silent p.I80I 0.41 TCGA-06-5416-01 1 248004863 248004863 G T OR11L1 Nonsense_Mutation p.C112* 0.22 TCGA-06-5416-01 1 248039680 248039680 C A TRIM58 Silent p.I450I 0.19 TCGA-06-5416-01 1 248058947 248058947 G A OR2W3 Missense_Mutation p.R20Q 0.47 tolerated(0.46) benign(0.017) TCGA-06-5416-01 1 248059573 248059573 C T OR2W3 Missense_Mutation p.R229W 0.24 deleterious(0) possibly_damaging(0.846) TCGA-06-5416-01 1 248308928 248308928 C T OR2M5 Missense_Mutation p.A160V 0.44 tolerated(0.88) benign(0.002) TCGA-06-5416-01 1 24840866 24840866 C T RCAN3 Silent p.L2L 0.25 TCGA-06-5416-01 1 248458179 248458179 C A OR2T12 Missense_Mutation p.K234N 0.21 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 1 248487583 248487583 G A OR2M7 Silent p.G96G 0.35 TCGA-06-5416-01 1 248525653 248525653 C T OR2T4 Silent p.I257I 0.48 TCGA-06-5416-01 1 248551234 248551234 G T OR2T6 Missense_Mutation p.G109W 0.09 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 248637336 248637336 C T OR2T3 Missense_Mutation p.L229F 0.35 deleterious(0) possibly_damaging(0.875) TCGA-06-5416-01 1 248637479 248637479 C T OR2T3 Silent p.D276D 0.11 TCGA-06-5416-01 1 248637506 248637506 C A OR2T3 Silent p.I285I 0.22 TCGA-06-5416-01 1 248685533 248685533 G A OR2G6 Missense_Mutation p.E196K 0.24 deleterious(0.01) possibly_damaging(0.775) TCGA-06-5416-01 1 249119032 249119032 C A SH3BP5L Nonsense_Mutation p.E35* 0.19 TCGA-06-5416-01 1 2491363 2491363 G A TNFRSF14 Missense_Mutation p.A136T 0.53 tolerated(0.38) benign(0.202) TCGA-06-5416-01 1 249142406 249142406 C T ZNF672 Silent p.F311F 0.37 TCGA-06-5416-01 1 24972487 24972487 G T SRRM1 Nonsense_Mutation p.E12* 0.16 TCGA-06-5416-01 1 24987217 24987217 A G SRRM1 Silent p.K441K 0.45 TCGA-06-5416-01 1 2520856 2520856 G T FAM213B Missense_Mutation p.R226I 0.11 deleterious(0.01) benign(0.137) TCGA-06-5416-01 1 25233840 25233840 G A RUNX3 Missense_Mutation p.R219C 0.14 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 1 2526231 2526231 A G MMEL1 Silent p.N562N 0.21 TCGA-06-5416-01 1 2537012 2537012 G A MMEL1 Silent p.G267G 0.51 TCGA-06-5416-01 1 25568981 25568981 A C C1orf63 3'UTR 0.22 TCGA-06-5416-01 1 25599055 25599055 C T RHD Missense_Mutation p.P6L 0.47 deleterious(0.01) probably_damaging(0.966) TCGA-06-5416-01 1 25747261 25747261 G A RHCE Missense_Mutation p.P6L 0.14 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 1 25780824 25780824 G T TMEM57 Missense_Mutation p.D142Y 0.19 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 1 25783201 25783201 A C TMEM57 Missense_Mutation p.K177N 0.20 deleterious(0.01) possibly_damaging(0.456) TCGA-06-5416-01 1 25880529 25880529 G A LDLRAP1 Missense_Mutation p.A69T 0.44 deleterious(0.05) probably_damaging(0.933) TCGA-06-5416-01 1 26073194 26073194 G A MAN1C1 Missense_Mutation p.D225N 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 1 26161957 26161957 G A AUNIP Missense_Mutation p.L201F 0.20 tolerated(0.12) probably_damaging(0.934) TCGA-06-5416-01 1 26230236 26230236 A G STMN1 Missense_Mutation p.S28P 0.38 deleterious(0.01) benign(0.431) TCGA-06-5416-01 1 26303224 26303224 G T PAFAH2 Nonsense_Mutation p.S236* 0.34 TCGA-06-5416-01 1 26310448 26310448 G A PAFAH2 Missense_Mutation p.R181W 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 26349170 26349170 G A EXTL1 Nonsense_Mutation p.W11* 0.38 TCGA-06-5416-01 1 26372420 26372420 G A SLC30A2 5'UTR 0.34 TCGA-06-5416-01 1 26441048 26441048 G T PDIK1L Missense_Mutation p.K83N 0.25 tolerated(0.19) benign(0.395) TCGA-06-5416-01 1 26448418 26448418 G T PDIK1L Missense_Mutation p.D126Y 0.24 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 26582324 26582324 G A CEP85 Missense_Mutation p.E291K 0.23 deleterious(0) possibly_damaging(0.783) TCGA-06-5416-01 1 26584679 26584679 C T CEP85 Silent p.S361S 0.26 TCGA-06-5416-01 1 26598549 26598549 G A CEP85 Missense_Mutation p.R594H 0.29 tolerated(0.49) benign(0.001) TCGA-06-5416-01 1 26609162 26609162 G A UBXN11 Nonsense_Mutation p.R424* 0.44 TCGA-06-5416-01 1 26610892 26610892 G A UBXN11 Silent p.L312L 0.42 TCGA-06-5416-01 1 26612353 26612353 G A UBXN11 Silent p.F245F 0.17 TCGA-06-5416-01 1 26663177 26663177 G A AIM1L Silent p.L446L 0.45 TCGA-06-5416-01 1 26885383 26885383 C T RPS6KA1 Silent p.D399D 0.35 TCGA-06-5416-01 1 26887589 26887589 G A RPS6KA1 Silent p.R474R 0.25 TCGA-06-5416-01 1 27094310 27094310 G A ARID1A Silent p.E1006E 0.48 TCGA-06-5416-01 1 27094402 27094402 G A ARID1A Missense_Mutation p.G1037D 0.44 unknown(0) TCGA-06-5416-01 1 27099473 27099473 G T ARID1A Missense_Mutation p.R1237M 0.29 unknown(0) TCGA-06-5416-01 1 27106350 27106350 C A ARID1A Silent p.T1987T 0.41 TCGA-06-5416-01 1 27120738 27120738 C A PIGV Missense_Mutation p.F71L 0.48 deleterious(0.02) probably_damaging(0.951) TCGA-06-5416-01 1 27121091 27121091 T C PIGV Missense_Mutation p.V189A 0.46 tolerated(0.17) benign(0.002) TCGA-06-5416-01 1 27179263 27179263 G T ZDHHC18 Missense_Mutation p.S319I 0.18 deleterious(0.04) benign(0.091) TCGA-06-5416-01 1 27190300 27190300 C T SFN Silent p.D199D 0.39 TCGA-06-5416-01 1 27216555 27216555 C A GPN2 Silent p.G11G 0.47 TCGA-06-5416-01 1 27220753 27220753 G A GPATCH3 Missense_Mutation p.A342V 0.19 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 1 27278436 27278436 G A C1orf172 Missense_Mutation p.R146W 0.26 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 1 27428248 27428248 G A SLC9A1 Missense_Mutation p.R669W 0.20 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 1 27480543 27480543 C T SLC9A1 Missense_Mutation p.D95N 0.47 tolerated(0.3) benign(0.003) TCGA-06-5416-01 1 27676975 27676975 G A SYTL1 Missense_Mutation p.R335Q 0.49 tolerated(0.06) benign(0.038) TCGA-06-5416-01 1 27684037 27684037 C A MAP3K6 Nonsense_Mutation p.E1038* 0.23 TCGA-06-5416-01 1 27684313 27684313 C T MAP3K6 Silent p.G990G 0.54 TCGA-06-5416-01 1 27688067 27688067 G A MAP3K6 Missense_Mutation p.R544W 0.39 deleterious(0.01) possibly_damaging(0.462) TCGA-06-5416-01 1 27736548 27736548 G A WASF2 Missense_Mutation p.P326L 0.23 deleterious(0.04) unknown(0) TCGA-06-5416-01 1 27875080 27875080 G A AHDC1 Missense_Mutation p.R1183W 0.28 deleterious(0) possibly_damaging(0.835) TCGA-06-5416-01 1 27942321 27942321 C T FGR Silent p.A239A 0.27 TCGA-06-5416-01 1 27949591 27949591 G T FGR Silent p.T97T 0.31 TCGA-06-5416-01 1 28178064 28178064 C A PPP1R8 3'UTR 0.17 TCGA-06-5416-01 1 28209080 28209080 G A THEMIS2 Silent p.E415E 0.43 TCGA-06-5416-01 1 28279757 28279757 T C SMPDL3B Silent p.H135H 0.21 TCGA-06-5416-01 1 28280953 28280953 G A SMPDL3B Silent p.A202A 0.21 TCGA-06-5416-01 1 28293319 28293319 G A XKR8 Missense_Mutation p.A266T 0.48 tolerated(0.06) possibly_damaging(0.859) TCGA-06-5416-01 1 28354314 28354314 G T EYA3 Missense_Mutation p.S162Y 0.49 tolerated(0.06) possibly_damaging(0.804) TCGA-06-5416-01 1 28477136 28477136 G A PTAFR Missense_Mutation p.R133C 0.36 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 1 28477205 28477205 C T PTAFR Missense_Mutation p.V110I 0.45 tolerated(0.05) benign(0.21) TCGA-06-5416-01 1 28564448 28564448 C T ATPIF1 Missense_Mutation p.R94C 0.18 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 1 28598242 28598242 T C SESN2 Missense_Mutation p.S72P 0.45 deleterious(0.02) benign(0.21) TCGA-06-5416-01 1 28793259 28793259 G A PHACTR4 Missense_Mutation p.R278K 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-06-5416-01 1 28906402 28906402 G T TRNAU1AP 3'Flank 0.41 TCGA-06-5416-01 1 29069550 29069550 G A YTHDF2 Silent p.K256K 0.20 TCGA-06-5416-01 1 29070295 29070295 G A YTHDF2 Missense_Mutation p.V505I 0.30 deleterious(0.02) possibly_damaging(0.879) TCGA-06-5416-01 1 29533290 29533290 G A MECR Silent p.F178F 0.18 TCGA-06-5416-01 1 29533360 29533360 T C MECR Missense_Mutation p.D155G 0.39 deleterious(0.02) benign(0.014) TCGA-06-5416-01 1 2985805 2985805 G T PRDM16 5'UTR 0.12 TCGA-06-5416-01 1 31188800 31188800 C T MATN1 Missense_Mutation p.S388N 0.38 deleterious(0.04) probably_damaging(0.997) TCGA-06-5416-01 1 3160676 3160676 C T PRDM16 Missense_Mutation p.S138L 0.42 deleterious_low_confidence(0.04) benign(0.022) TCGA-06-5416-01 1 31769574 31769574 C T SNRNP40 Missense_Mutation p.G9S 0.21 tolerated(0.14) benign(0.05) TCGA-06-5416-01 1 31898637 31898637 G A SERINC2 Missense_Mutation p.G172S 0.46 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 1 32119643 32119643 C A COL16A1 Missense_Mutation p.E1453D 0.19 possibly_damaging(0.578) TCGA-06-5416-01 1 32124555 32124555 C T COL16A1 Missense_Mutation p.G1297E 0.45 unknown(0) TCGA-06-5416-01 1 32145210 32145210 C A COL16A1 Intron 0.39 TCGA-06-5416-01 1 32158394 32158394 G A COL16A1 Nonsense_Mutation p.R363* 0.46 TCGA-06-5416-01 1 32210310 32210310 C T BAI2 Silent p.P287P 0.18 TCGA-06-5416-01 1 32256628 32256628 C T SPOCD1 Missense_Mutation p.G1076D 0.37 tolerated(0.17) benign(0.183) TCGA-06-5416-01 1 32257899 32257899 G T SPOCD1 Missense_Mutation p.S960Y 0.46 deleterious(0) probably_damaging(0.925) TCGA-06-5416-01 1 32259738 32259738 G A SPOCD1 Silent p.C790C 0.48 TCGA-06-5416-01 1 32264091 32264091 C T SPOCD1 Silent p.K660K 0.41 TCGA-06-5416-01 1 32279907 32279907 G A SPOCD1 Missense_Mutation p.A343V 0.23 tolerated(0.17) benign(0.109) TCGA-06-5416-01 1 32568258 32568258 A G TMEM39B Missense_Mutation p.D488G 0.14 tolerated_low_confidence(0.13) benign(0.047) TCGA-06-5416-01 1 32636429 32636429 C T KPNA6 Silent p.V515V 0.44 TCGA-06-5416-01 1 32657918 32657918 G A TXLNA Missense_Mutation p.D324N 0.46 deleterious(0.04) benign(0.064) TCGA-06-5416-01 1 32673323 32673323 G T IQCC Missense_Mutation p.E427D 0.05 deleterious(0.01) possibly_damaging(0.681) TCGA-06-5416-01 1 32689675 32689675 G A EIF3I Missense_Mutation p.G46D 0.17 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 32740446 32740446 G A LCK Intron 0.40 TCGA-06-5416-01 1 32741544 32741544 G A LCK Missense_Mutation p.D171N 0.42 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 1 32741584 32741584 G A LCK Missense_Mutation p.R184H 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 1 32796257 32796257 C T HDAC1 Missense_Mutation p.R270W 0.21 deleterious(0.03) benign(0.42) TCGA-06-5416-01 1 32800144 32800144 A G MARCKSL1 3'UTR 0.47 TCGA-06-5416-01 1 32843620 32843620 C T BSDC1 Silent p.Q226Q 0.23 TCGA-06-5416-01 1 32849574 32849574 C A BSDC1 Nonsense_Mutation p.E89* 0.43 TCGA-06-5416-01 1 33059039 33059039 G A ZBTB8A Silent p.E169E 0.18 TCGA-06-5416-01 1 33065805 33065805 G T ZBTB8A Nonsense_Mutation p.E371* 0.49 TCGA-06-5416-01 1 33087496 33087496 C A ZBTB8OS Missense_Mutation p.E169D 0.47 tolerated(0.4) benign(0.109) TCGA-06-5416-01 1 3313120 3313120 C T PRDM16 Silent p.G213G 0.23 TCGA-06-5416-01 1 33147440 33147440 G A SYNC 3'UTR 0.37 TCGA-06-5416-01 1 33237429 33237429 C T KIAA1522 Silent p.L883L 0.22 TCGA-06-5416-01 1 33237769 33237769 C T KIAA1522 Missense_Mutation p.R997W 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 33276604 33276604 T G YARS Missense_Mutation p.I38L 0.13 tolerated(0.38) benign(0.016) TCGA-06-5416-01 1 3329182 3329182 C T PRDM16 Silent p.I807I 0.48 TCGA-06-5416-01 1 33360378 33360378 C T TMEM54 3'UTR 0.23 TCGA-06-5416-01 1 33402722 33402722 G A RNF19B Silent p.G628G 0.42 TCGA-06-5416-01 1 33404113 33404113 C T RNF19B Missense_Mutation p.D544N 0.22 deleterious(0.01) possibly_damaging(0.46) TCGA-06-5416-01 1 3348689 3348689 G A PRDM16 Silent p.R1227R 0.19 TCGA-06-5416-01 1 3350436 3350436 C T PRDM16 3'UTR 0.35 TCGA-06-5416-01 1 33583790 33583790 G T ADC Intron 0.13 TCGA-06-5416-01 1 33585701 33585701 T C ADC Missense_Mutation p.V434A 0.17 tolerated(0.22) benign(0.001) TCGA-06-5416-01 1 33646745 33646745 C T TRIM62 Missense_Mutation p.D97N 0.44 deleterious(0.03) benign(0.059) TCGA-06-5416-01 1 33820454 33820454 C T PHC2 Silent p.Q459Q 0.39 TCGA-06-5416-01 1 33833021 33833021 G A PHC2 Silent p.N224N 0.45 TCGA-06-5416-01 1 33960301 33960301 G A ZSCAN20 Missense_Mutation p.R786K 0.43 tolerated(0.05) benign(0.062) TCGA-06-5416-01 1 3396375 3396375 G T ARHGEF16 Splice_Site p.X630_splice 0.40 TCGA-06-5416-01 1 3407480 3407480 G A MEGF6 Silent p.G1520G 0.34 TCGA-06-5416-01 1 34090854 34090854 G A CSMD2 Missense_Mutation p.A1726V 0.17 deleterious(0.03) benign(0.38) TCGA-06-5416-01 1 34092120 34092120 G A CSMD2 Silent p.L1714L 0.43 TCGA-06-5416-01 1 34158556 34158556 G A CSMD2 Silent p.I1302I 0.42 TCGA-06-5416-01 1 3427390 3427390 G A MEGF6 Silent p.C397C 0.17 TCGA-06-5416-01 1 34329912 34329912 G A HMGB4 Silent p.E40E 0.44 TCGA-06-5416-01 1 34330337 34330337 G T HMGB4 Missense_Mutation p.R182I 0.14 deleterious(0.03) benign(0.308) TCGA-06-5416-01 1 34663136 34663136 C A C1orf94 Missense_Mutation p.L211M 0.55 deleterious(0.01) probably_damaging(0.982) TCGA-06-5416-01 1 34663392 34663392 C T C1orf94 Missense_Mutation p.P296L 0.44 deleterious(0) benign(0.109) TCGA-06-5416-01 1 34666598 34666598 G A C1orf94 Missense_Mutation p.R412Q 0.16 deleterious_low_confidence(0.04) probably_damaging(0.92) TCGA-06-5416-01 1 35223403 35223403 C T GJB5 Missense_Mutation p.L158F 0.21 tolerated(0.12) benign(0.327) TCGA-06-5416-01 1 35223665 35223665 C T GJB5 Missense_Mutation p.S245L 0.25 tolerated(0.29) benign(0) TCGA-06-5416-01 1 35227302 35227302 C T GJB4 Silent p.F149F 0.15 TCGA-06-5416-01 1 35260045 35260045 C T GJA4 Silent p.Y77Y 0.48 TCGA-06-5416-01 1 35260337 35260337 C T GJA4 Missense_Mutation p.R175C 0.23 tolerated(0.11) benign(0.007) TCGA-06-5416-01 1 35365702 35365702 C T DLGAP3 Missense_Mutation p.R427H 0.24 tolerated(0.57) possibly_damaging(0.512) TCGA-06-5416-01 1 35365813 35365813 C T DLGAP3 Missense_Mutation p.R390H 0.36 deleterious(0) possibly_damaging(0.764) TCGA-06-5416-01 1 35578782 35578782 G T ZMYM1 Missense_Mutation p.G451C 0.50 deleterious(0.05) possibly_damaging(0.619) TCGA-06-5416-01 1 35578923 35578923 C A ZMYM1 Missense_Mutation p.H498N 0.48 tolerated(0.17) benign(0.167) TCGA-06-5416-01 1 35851042 35851042 G T ZMYM4 Splice_Site p.X524_splice 0.17 TCGA-06-5416-01 1 35851752 35851752 C T ZMYM4 Missense_Mutation p.R600C 0.40 deleterious(0) benign(0.079) TCGA-06-5416-01 1 35855574 35855574 G A ZMYM4 Missense_Mutation p.R821Q 0.15 tolerated(0.21) benign(0.119) TCGA-06-5416-01 1 35915982 35915982 C A KIAA0319L Missense_Mutation p.D731Y 0.19 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 1 36212365 36212365 A G CLSPN Splice_Site p.X952_splice 0.18 TCGA-06-5416-01 1 36216865 36216865 C T CLSPN Missense_Mutation p.E672K 0.21 tolerated(0.17) benign(0.023) TCGA-06-5416-01 1 36226719 36226719 C T CLSPN Missense_Mutation p.G328R 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 36349008 36349008 G A AGO1 5'UTR 0.21 TCGA-06-5416-01 1 36358783 36358783 G A AGO1 Missense_Mutation p.R139Q 0.21 tolerated(0.47) benign(0.003) TCGA-06-5416-01 1 36359342 36359342 C T AGO1 Missense_Mutation p.R194C 0.47 deleterious(0.03) probably_damaging(0.967) TCGA-06-5416-01 1 36359376 36359376 G A AGO1 Missense_Mutation p.R205H 0.48 deleterious(0) probably_damaging(0.913) TCGA-06-5416-01 1 3638747 3638747 G A TP73 Missense_Mutation p.E198K 0.37 tolerated(0.05) benign(0.073) TCGA-06-5416-01 1 36520645 36520645 C T AGO3 Silent p.Y791Y 0.26 TCGA-06-5416-01 1 3662465 3662465 C T TP73-AS1 RNA 0.23 TCGA-06-5416-01 1 3673395 3673395 G A CCDC27 Missense_Mutation p.A218T 0.46 tolerated(0.47) benign(0.084) TCGA-06-5416-01 1 36752202 36752202 G A THRAP3 Missense_Mutation p.R124H 0.20 deleterious(0) unknown(0) TCGA-06-5416-01 1 36762236 36762236 G A THRAP3 Missense_Mutation p.R723H 0.20 deleterious(0.03) benign(0.004) TCGA-06-5416-01 1 36788120 36788120 C A EVA1B Missense_Mutation p.D92Y 0.20 deleterious(0.03) possibly_damaging(0.825) TCGA-06-5416-01 1 36820933 36820933 G T STK40 Missense_Mutation p.D148E 0.19 tolerated(0.41) benign(0.34) TCGA-06-5416-01 1 36859300 36859300 G T LSM10 3'UTR 0.19 TCGA-06-5416-01 1 36921385 36921385 G T MRPS15 3'UTR 0.18 TCGA-06-5416-01 1 36945080 36945080 G T CSF3R Missense_Mutation p.N6K 0.46 deleterious_low_confidence(0.02) benign(0.02) TCGA-06-5416-01 1 37267556 37267556 C T GRIK3 Missense_Mutation p.V886I 0.42 tolerated_low_confidence(0.05) benign(0.206) TCGA-06-5416-01 1 3754080 3754080 G A CEP104 Nonsense_Mutation p.R299* 0.19 TCGA-06-5416-01 1 37941086 37941086 G T ZC3H12A 5'UTR 0.17 TCGA-06-5416-01 1 37947391 37947391 G A ZC3H12A Missense_Mutation p.R258H 0.18 deleterious(0.03) benign(0.411) TCGA-06-5416-01 1 37975121 37975121 G A MEAF6 Nonsense_Mutation p.R77* 0.18 TCGA-06-5416-01 1 38005773 38005773 G A SNIP1 Missense_Mutation p.A304V 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 38018280 38018280 C T SNIP1 Missense_Mutation p.R98Q 0.44 deleterious(0.02) benign(0.013) TCGA-06-5416-01 1 38019717 38019717 G A SNIP1 Silent p.V38V 0.49 TCGA-06-5416-01 1 38042076 38042076 G A GNL2 Missense_Mutation p.R331C 0.47 deleterious(0) probably_damaging(0.97) TCGA-06-5416-01 1 38078422 38078422 T C RSPO1 3'UTR 0.45 TCGA-06-5416-01 1 38079506 38079506 G T RSPO1 Silent p.L165L 0.39 TCGA-06-5416-01 1 38171190 38171190 T G CDCA8 Missense_Mutation p.L221R 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 38181639 38181639 G T EPHA10 3'Flank 0.18 TCGA-06-5416-01 1 38185173 38185173 C A EPHA10 Missense_Mutation p.R890L 0.48 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 1 38227381 38227381 C T EPHA10 Silent p.P182P 0.18 TCGA-06-5416-01 1 38288165 38288165 T C MTF1 Silent p.L465L 0.51 TCGA-06-5416-01 1 38301409 38301409 G A MTF1 Missense_Mutation p.H263Y 0.20 tolerated(0.05) benign(0.376) TCGA-06-5416-01 1 38304378 38304378 G T MTF1 Missense_Mutation p.S233Y 0.26 deleterious(0.04) probably_damaging(0.949) TCGA-06-5416-01 1 38343964 38343964 G A INPP5B Missense_Mutation p.R525W 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 38351379 38351379 T C INPP5B Missense_Mutation p.D417G 0.46 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 1 38411954 38411954 C T INPP5B Silent p.E9E 0.21 TCGA-06-5416-01 1 38411999 38411999 C T INPP5B 5'UTR 0.16 TCGA-06-5416-01 1 38455609 38455609 C T SF3A3 Missense_Mutation p.R10H 0.42 deleterious(0.04) benign(0.032) TCGA-06-5416-01 1 38484250 38484250 G C UTP11L Splice_Site p.X114_splice 0.26 TCGA-06-5416-01 1 39330280 39330280 C T MYCBP 3'UTR 0.26 TCGA-06-5416-01 1 39341386 39341386 G A GJA9 Missense_Mutation p.R129W 0.45 deleterious(0.03) possibly_damaging(0.451) TCGA-06-5416-01 1 39361728 39361728 G A RHBDL2 Silent p.S174S 0.22 TCGA-06-5416-01 1 39796818 39796818 T C MACF1 Intron 0.50 TCGA-06-5416-01 1 39798624 39798624 G A MACF1 Intron 0.44 TCGA-06-5416-01 1 39801320 39801320 G T MACF1 Intron 0.42 TCGA-06-5416-01 1 39835744 39835744 C A MACF1 Missense_Mutation p.F2265L 0.33 probably_damaging(0.998) TCGA-06-5416-01 1 39845057 39845057 G A MACF1 Missense_Mutation p.D2425N 0.23 benign(0.037) TCGA-06-5416-01 1 39852864 39852864 C T MACF1 Missense_Mutation p.R2722C 0.18 probably_damaging(0.992) TCGA-06-5416-01 1 39878029 39878029 C T KIAA0754 Silent p.L562L 0.24 TCGA-06-5416-01 1 39878166 39878166 C A KIAA0754 Missense_Mutation p.F607L 0.24 benign(0) TCGA-06-5416-01 1 39880169 39880169 C A KIAA0754 Missense_Mutation p.S1275Y 0.24 unknown(0) TCGA-06-5416-01 1 39896491 39896491 T C MACF1 Missense_Mutation p.S3688P 0.24 probably_damaging(0.974) TCGA-06-5416-01 1 39903520 39903520 G T MACF1 Silent p.L3961L 0.24 TCGA-06-5416-01 1 39913254 39913254 C T MACF1 Missense_Mutation p.H4527Y 0.42 probably_damaging(0.998) TCGA-06-5416-01 1 39919517 39919517 G A MACF1 Missense_Mutation p.E4902K 0.43 probably_damaging(0.999) TCGA-06-5416-01 1 40007506 40007506 A G PPIEL RNA 0.46 TCGA-06-5416-01 1 40011421 40011421 G A PPIEL RNA 0.59 TCGA-06-5416-01 1 40029576 40029576 C T PABPC4 Missense_Mutation p.R491H 0.18 tolerated(0.16) benign(0.043) TCGA-06-5416-01 1 40036974 40036974 G A PABPC4 Silent p.F145F 0.40 TCGA-06-5416-01 1 40092633 40092633 G T HEYL Missense_Mutation p.S178Y 0.19 deleterious(0) possibly_damaging(0.494) TCGA-06-5416-01 1 40097226 40097226 C T HEYL Missense_Mutation p.R58H 0.20 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 1 40225951 40225951 G A BMP8B 3'UTR 0.28 TCGA-06-5416-01 1 40226008 40226008 C A BMP8B 3'UTR 0.43 TCGA-06-5416-01 1 40230332 40230332 G A BMP8B Silent p.N277N 0.11 TCGA-06-5416-01 1 40230384 40230384 C T BMP8B Missense_Mutation p.R260H 0.24 deleterious(0) benign(0.033) TCGA-06-5416-01 1 40230416 40230416 G T BMP8B Silent p.V249V 0.10 TCGA-06-5416-01 1 40235345 40235345 C T OXCT2 3'UTR 0.19 TCGA-06-5416-01 1 40310229 40310229 G A TRIT1 Missense_Mutation p.L364F 0.16 tolerated(0.11) benign(0.019) TCGA-06-5416-01 1 40315914 40315914 C A TRIT1 Nonsense_Mutation p.E194* 0.48 TCGA-06-5416-01 1 40363369 40363369 G A MYCL Missense_Mutation p.P287L 0.40 tolerated(0.35) benign(0.003) TCGA-06-5416-01 1 40434031 40434031 G A MFSD2A Missense_Mutation p.D425N 0.17 tolerated(0.07) probably_damaging(0.995) TCGA-06-5416-01 1 40668150 40668150 C T RLF Missense_Mutation p.S225F 0.34 deleterious(0.02) possibly_damaging(0.878) TCGA-06-5416-01 1 40702732 40702732 A G RLF Silent p.G786G 0.18 TCGA-06-5416-01 1 40705132 40705132 G T RLF Missense_Mutation p.E1586D 0.20 tolerated(0.96) benign(0.003) TCGA-06-5416-01 1 40747179 40747179 G T ZMPSTE24 Nonsense_Mutation p.E312* 0.41 TCGA-06-5416-01 1 40758449 40758449 G A ZMPSTE24 3'UTR 0.16 TCGA-06-5416-01 1 40872414 40872414 G A SMAP2 Missense_Mutation p.R37Q 0.18 deleterious(0) possibly_damaging(0.449) TCGA-06-5416-01 1 40879781 40879781 G T SMAP2 Intron 0.14 TCGA-06-5416-01 1 40879897 40879897 G T SMAP2 Missense_Mutation p.D186Y 0.38 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 40919884 40919884 C T ZFP69B Missense_Mutation p.S46F 0.14 deleterious(0.01) benign(0.229) TCGA-06-5416-01 1 40922642 40922642 C A ZFP69B Missense_Mutation p.S80Y 0.43 tolerated(0.28) benign(0.082) TCGA-06-5416-01 1 40922701 40922701 C T ZFP69B Missense_Mutation p.R100W 0.25 deleterious(0.03) probably_damaging(0.99) TCGA-06-5416-01 1 40944826 40944826 C A ZFP69 5'UTR 0.19 TCGA-06-5416-01 1 40960635 40960635 G A ZFP69 Missense_Mutation p.S162N 0.40 tolerated(0.91) benign(0) TCGA-06-5416-01 1 40980801 40980801 G A EXO5 Silent p.A195A 0.34 TCGA-06-5416-01 1 40981297 40981297 C T EXO5 Missense_Mutation p.L361F 0.41 tolerated_low_confidence(0.57) benign(0.001) TCGA-06-5416-01 1 41218876 41218876 C T NFYC Silent p.I115I 0.42 TCGA-06-5416-01 1 41236377 41236377 G A NFYC Intron 0.39 TCGA-06-5416-01 1 41300756 41300756 G A KCNQ4 Silent p.K577K 0.47 TCGA-06-5416-01 1 41474373 41474373 G A CTPS1 Missense_Mutation p.R479H 0.19 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 1 41481685 41481685 C T SLFNL1 3'UTR 0.23 TCGA-06-5416-01 1 42048162 42048162 T C HIVEP3 Silent p.G769G 0.16 TCGA-06-5416-01 1 42049460 42049460 C A HIVEP3 Missense_Mutation p.D337Y 0.43 possibly_damaging(0.905) TCGA-06-5416-01 1 42049801 42049801 C T HIVEP3 Missense_Mutation p.G223D 0.40 probably_damaging(0.972) TCGA-06-5416-01 1 42049802 42049802 C T HIVEP3 Missense_Mutation p.G223S 0.20 probably_damaging(0.941) TCGA-06-5416-01 1 42620524 42620524 C A GUCA2B Silent p.I88I 0.15 TCGA-06-5416-01 1 42621248 42621248 C T GUCA2B Missense_Mutation p.A107V 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 42654534 42654534 C T FOXJ3 Missense_Mutation p.D507N 0.17 tolerated(0.37) probably_damaging(0.985) TCGA-06-5416-01 1 43032079 43032079 G A CCDC30 Missense_Mutation p.R263Q 0.46 tolerated(0.14) benign(0.152) TCGA-06-5416-01 1 43131707 43131707 C T PPIH Silent p.C131C 0.12 TCGA-06-5416-01 1 43221238 43221238 C T LEPRE1 Missense_Mutation p.G384E 0.23 deleterious(0.04) benign(0.32) TCGA-06-5416-01 1 43296117 43296117 C T ERMAP Intron 0.46 TCGA-06-5416-01 1 43317294 43317294 G T ZNF691 Missense_Mutation p.R253I 0.12 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 43317435 43317435 G A ZNF691 Missense_Mutation p.R300H 0.25 tolerated(0.11) probably_damaging(0.997) TCGA-06-5416-01 1 43392900 43392900 G A SLC2A1 Missense_Mutation p.P431S 0.44 tolerated(0.19) benign(0.068) TCGA-06-5416-01 1 43630086 43630086 C A EBNA1BP2 3'UTR 0.22 TCGA-06-5416-01 1 43637861 43637861 C T EBNA1BP2 Intron 0.43 TCGA-06-5416-01 1 43672469 43672469 C A WDR65 Missense_Mutation p.L541M 0.23 tolerated(0.11) benign(0.205) TCGA-06-5416-01 1 43672498 43672498 C T WDR65 Silent p.C550C 0.49 TCGA-06-5416-01 1 43748370 43748370 C T C1orf210 3'UTR 0.50 TCGA-06-5416-01 1 43748761 43748761 C T C1orf210 Missense_Mutation p.E13K 0.19 tolerated(0.12) benign(0.273) TCGA-06-5416-01 1 43772641 43772641 C T TIE1 Silent p.S205S 0.26 TCGA-06-5416-01 1 43777724 43777724 C T TIE1 Missense_Mutation p.R518C 0.46 tolerated(0.19) benign(0.002) TCGA-06-5416-01 1 43825766 43825766 A G CDC20 Missense_Mutation p.Y185C 0.45 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 1 43826176 43826176 G A CDC20 Missense_Mutation p.D254N 0.18 deleterious(0) probably_damaging(0.962) TCGA-06-5416-01 1 43906903 43906903 G A SZT2 Missense_Mutation p.D2398N 0.48 tolerated(0.06) possibly_damaging(0.903) TCGA-06-5416-01 1 43912823 43912823 C T SZT2 Silent p.R3033R 0.15 TCGA-06-5416-01 1 43914361 43914361 C T SZT2 Missense_Mutation p.R3293C 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 43917518 43917518 G A HYI Missense_Mutation p.A169V 0.22 deleterious(0.01) benign(0.309) TCGA-06-5416-01 1 44084989 44084989 C T PTPRF Silent p.I1559I 0.29 TCGA-06-5416-01 1 44303970 44303970 G A ST3GAL3 Missense_Mutation p.A166T 0.43 tolerated(0.32) benign(0.126) TCGA-06-5416-01 1 44426907 44426907 T G IPO13 Missense_Mutation p.S773A 0.40 tolerated(0.09) benign(0.009) TCGA-06-5416-01 1 44437280 44437280 C T DPH2 Missense_Mutation p.R236W 0.24 deleterious(0) possibly_damaging(0.849) TCGA-06-5416-01 1 44442813 44442813 C A ATP6V0B Silent p.L172L 0.46 TCGA-06-5416-01 1 44595817 44595817 A C KLF17 Missense_Mutation p.K292Q 0.43 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 1 44877720 44877720 C T RNF220 5'UTR 0.15 TCGA-06-5416-01 1 45088442 45088442 G A RNF220 Missense_Mutation p.A263T 0.18 tolerated(0.57) benign(0.001) TCGA-06-5416-01 1 45115343 45115343 G T RNF220 Missense_Mutation p.D486Y 0.42 deleterious(0) possibly_damaging(0.759) TCGA-06-5416-01 1 45120386 45120386 C A TMEM53 Missense_Mutation p.D227Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 45120522 45120522 G A TMEM53 Silent p.V181V 0.43 TCGA-06-5416-01 1 45228301 45228301 G A KIF2C Missense_Mutation p.A648T 0.20 tolerated(0.08) benign(0.184) TCGA-06-5416-01 1 45232576 45232576 G A KIF2C Missense_Mutation p.E684K 0.42 tolerated(0.34) benign(0.014) TCGA-06-5416-01 1 45250375 45250375 C T BEST4 Silent p.P358P 0.43 TCGA-06-5416-01 1 45250842 45250842 G T BEST4 Missense_Mutation p.P284T 0.41 deleterious(0) benign(0.068) TCGA-06-5416-01 1 45268956 45268956 G A PLK3 Missense_Mutation p.R322Q 0.25 tolerated(0.2) benign(0.001) TCGA-06-5416-01 1 45269329 45269329 G A PLK3 Missense_Mutation p.R377H 0.20 tolerated(0.09) possibly_damaging(0.563) TCGA-06-5416-01 1 45270421 45270421 C T PLK3 Silent p.F535F 0.45 TCGA-06-5416-01 1 45297428 45297428 G A PTCH2 Silent p.L189L 0.43 TCGA-06-5416-01 1 45347343 45347343 G A EIF2B3 Missense_Mutation p.S242L 0.22 tolerated(0.44) benign(0.024) TCGA-06-5416-01 1 45479338 45479338 G A UROD Missense_Mutation p.D117N 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 45485744 45485744 C A ZSWIM5 Nonsense_Mutation p.E897* 0.18 TCGA-06-5416-01 1 45508946 45508946 G A ZSWIM5 Silent p.C518C 0.18 TCGA-06-5416-01 1 45887421 45887421 C A TESK2 Missense_Mutation p.R107I 0.22 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 1 46083234 46083234 A G NASP Missense_Mutation p.N753D 0.25 tolerated_low_confidence(0.06) benign(0.003) TCGA-06-5416-01 1 46099946 46099946 A G GPBP1L1 Intron 0.48 TCGA-06-5416-01 1 46182650 46182650 C T IPP Missense_Mutation p.R409Q 0.24 deleterious(0.04) probably_damaging(0.986) TCGA-06-5416-01 1 46206617 46206617 C T IPP Missense_Mutation p.R227Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 1 46501189 46501189 C A MAST2 Nonsense_Mutation p.C1616* 0.18 TCGA-06-5416-01 1 46501278 46501278 C A MAST2 Missense_Mutation p.P1646H 0.24 deleterious_low_confidence(0) benign(0.375) TCGA-06-5416-01 1 46660625 46660625 G T POMGNT1 Silent p.G181G 0.26 TCGA-06-5416-01 1 46738474 46738474 C T RAD54L Missense_Mutation p.H459Y 0.43 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 46746887 46746887 G A LRRC41 Missense_Mutation p.R556C 0.40 tolerated(0.05) possibly_damaging(0.835) TCGA-06-5416-01 1 46976763 46976763 C T DMBX1 Missense_Mutation p.R164C 0.17 deleterious(0.05) benign(0.009) TCGA-06-5416-01 1 47024242 47024242 G T MKNK1 3'UTR 0.24 TCGA-06-5416-01 1 47048953 47048953 C A MKNK1 Missense_Mutation p.R28M 0.20 deleterious(0.04) possibly_damaging(0.707) TCGA-06-5416-01 1 47048987 47048987 C T MKNK1 Missense_Mutation p.E17K 0.45 tolerated(0.09) benign(0.277) TCGA-06-5416-01 1 47078758 47078758 G A MOB3C Missense_Mutation p.A131V 0.21 tolerated(0.09) benign(0.024) TCGA-06-5416-01 1 47351138 47351138 C T CYP4Z2P RNA 0.25 TCGA-06-5416-01 1 47550600 47550600 C T CYP4Z1 Missense_Mutation p.S241F 0.29 deleterious(0.04) probably_damaging(0.951) TCGA-06-5416-01 1 47571899 47571899 C T CYP4Z1 Silent p.P389P 0.18 TCGA-06-5416-01 1 47609062 47609062 A G CYP4A22 Missense_Mutation p.D211G 0.20 tolerated(0.1) benign(0.232) TCGA-06-5416-01 1 47610098 47610098 G T CYP4A22 Missense_Mutation p.R287M 0.15 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 1 47611931 47611931 C A CYP4A22 Intron 0.21 TCGA-06-5416-01 1 47735434 47735434 C T STIL Missense_Mutation p.D830N 0.22 tolerated(0.98) benign(0.026) TCGA-06-5416-01 1 47770666 47770666 A C STIL Missense_Mutation p.F16C 0.37 deleterious(0.02) possibly_damaging(0.882) TCGA-06-5416-01 1 4834503 4834503 C T AJAP1 Missense_Mutation p.R394W 0.40 deleterious(0) benign(0.14) TCGA-06-5416-01 1 48764344 48764344 G T SPATA6 3'UTR 0.53 TCGA-06-5416-01 1 50659560 50659560 A G ELAVL4 Missense_Mutation p.T177A 0.20 deleterious(0.04) benign(0.172) TCGA-06-5416-01 1 51425480 51425480 C T FAF1 Missense_Mutation p.A2T 0.47 tolerated_low_confidence(0.12) benign(0.012) TCGA-06-5416-01 1 51439637 51439637 C T CDKN2C Nonsense_Mutation p.R68* 0.23 TCGA-06-5416-01 1 51777842 51777842 C A TTC39A Missense_Mutation p.D106Y 0.22 deleterious(0) possibly_damaging(0.596) TCGA-06-5416-01 1 51912717 51912717 C T EPS15 Missense_Mutation p.D238N 0.43 deleterious(0.01) possibly_damaging(0.767) TCGA-06-5416-01 1 52256644 52256644 C A NRD1 Missense_Mutation p.K1061N 0.38 tolerated(0.26) benign(0.038) TCGA-06-5416-01 1 52257309 52257309 C T NRD1 Silent p.R1035R 0.20 TCGA-06-5416-01 1 52280223 52280223 C A NRD1 Missense_Mutation p.R608I 0.15 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 52289455 52289455 T G NRD1 Missense_Mutation p.N415T 0.06 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 1 52498878 52498878 C T KTI12 Missense_Mutation p.A186T 0.19 tolerated(0.25) possibly_damaging(0.812) TCGA-06-5416-01 1 52703710 52703710 G A ZFYVE9 Missense_Mutation p.M207I 0.20 tolerated_low_confidence(0.57) benign(0.001) TCGA-06-5416-01 1 52803484 52803484 C A ZFYVE9 Silent p.S1237S 0.17 TCGA-06-5416-01 1 52823253 52823253 C T CC2D1B Nonsense_Mutation p.W572* 0.12 TCGA-06-5416-01 1 52849214 52849214 C A ORC1 Missense_Mutation p.D631Y 0.46 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 1 52861983 52861983 C A ORC1 Missense_Mutation p.K152N 0.22 tolerated(0.18) possibly_damaging(0.597) TCGA-06-5416-01 1 52862001 52862001 C T ORC1 Silent p.T146T 0.20 TCGA-06-5416-01 1 52863506 52863506 G A ORC1 Nonsense_Mutation p.R85* 0.20 TCGA-06-5416-01 1 52896790 52896790 G A ZCCHC11 Missense_Mutation p.P1536S 0.44 deleterious_low_confidence(0.02) possibly_damaging(0.755) TCGA-06-5416-01 1 52902548 52902548 G A ZCCHC11 Silent p.H1347H 0.48 TCGA-06-5416-01 1 52903911 52903911 C A ZCCHC11 Missense_Mutation p.D1307Y 0.38 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 1 52981450 52981450 G T ZCCHC11 Intron 0.22 TCGA-06-5416-01 1 53158499 53158499 C A COA7 Missense_Mutation p.K49N 0.16 tolerated(0.05) benign(0.411) TCGA-06-5416-01 1 53237306 53237306 C A ZYG11B Missense_Mutation p.L271M 0.20 deleterious(0) probably_damaging(0.931) TCGA-06-5416-01 1 53287191 53287191 C T ZYG11B Missense_Mutation p.P709S 0.23 tolerated(0.36) probably_damaging(0.994) TCGA-06-5416-01 1 53372190 53372190 C T ECHDC2 Splice_Site p.X153_splice 0.20 TCGA-06-5416-01 1 53546513 53546513 C T PODN Silent p.F590F 0.46 TCGA-06-5416-01 1 53679281 53679282 - A CPT2 3'UTR 0.20 TCGA-06-5416-01 1 53715192 53715192 G A LRP8 Missense_Mutation p.P905S 0.39 tolerated_low_confidence(0.13) benign(0.004) TCGA-06-5416-01 1 53925262 53925262 C T DMRTB1 Missense_Mutation p.R46C 0.37 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 1 54423891 54423891 C A LRRC42 Silent p.S181S 0.20 TCGA-06-5416-01 1 54474670 54474670 G A LDLRAD1 Silent p.A201A 0.16 TCGA-06-5416-01 1 54511412 54511412 G A TMEM59 Missense_Mutation p.L115F 0.40 tolerated(0.14) possibly_damaging(0.559) TCGA-06-5416-01 1 54513064 54513064 G T TMEM59 Intron 0.19 TCGA-06-5416-01 1 54562116 54562116 C T TCEANC2 Silent p.V199V 0.40 TCGA-06-5416-01 1 54618688 54618688 G A CDCP2 5'UTR 0.08 TCGA-06-5416-01 1 55081723 55081723 G A FAM151A Silent p.L129L 0.43 TCGA-06-5416-01 1 55136561 55136561 G T MROH7 Missense_Mutation p.A520S 0.30 tolerated(0.05) benign(0.216) TCGA-06-5416-01 1 55224328 55224328 C A PARS2 Missense_Mutation p.Q169H 0.19 tolerated(0.57) benign(0.142) TCGA-06-5416-01 1 55224807 55224807 C A PARS2 Missense_Mutation p.A10S 0.46 tolerated_low_confidence(0.18) benign(0.002) TCGA-06-5416-01 1 55251673 55251673 A G TTC22 Missense_Mutation p.Y335H 0.22 deleterious(0.03) probably_damaging(0.991) TCGA-06-5416-01 1 55337032 55337032 C T DHCR24 Silent p.E289E 0.27 TCGA-06-5416-01 1 55340882 55340882 C T DHCR24 Missense_Mutation p.G166S 0.12 deleterious(0) possibly_damaging(0.627) TCGA-06-5416-01 1 55555409 55555409 C T USP24 Missense_Mutation p.D2187N 0.32 tolerated(0.37) benign(0.154) TCGA-06-5416-01 1 55562822 55562822 C A USP24 Missense_Mutation p.E1913D 0.29 tolerated(0.11) possibly_damaging(0.505) TCGA-06-5416-01 1 55563750 55563750 G A USP24 Missense_Mutation p.R1821C 0.41 deleterious(0) possibly_damaging(0.79) TCGA-06-5416-01 1 55590193 55590193 C T USP24 Missense_Mutation p.E1357K 0.45 deleterious(0.02) benign(0.146) TCGA-06-5416-01 1 55607388 55607388 A C USP24 Missense_Mutation p.L884R 0.57 deleterious(0) possibly_damaging(0.851) TCGA-06-5416-01 1 57170021 57170021 C T PRKAA2 Missense_Mutation p.T389M 0.21 tolerated(0.11) possibly_damaging(0.886) TCGA-06-5416-01 1 57341746 57341746 A C C8A Missense_Mutation p.K110Q 0.16 deleterious(0.02) possibly_damaging(0.457) TCGA-06-5416-01 1 57431599 57431599 G T C8B Missense_Mutation p.A8D 0.15 tolerated_low_confidence(0.19) benign(0.244) TCGA-06-5416-01 1 57602292 57602292 G A DAB1 Missense_Mutation p.S77F 0.38 deleterious(0) possibly_damaging(0.512) TCGA-06-5416-01 1 57602304 57602304 G T DAB1 Missense_Mutation p.A73D 0.10 deleterious(0) benign(0.405) TCGA-06-5416-01 1 59002309 59002309 A C OMA1 Missense_Mutation p.F202C 0.24 tolerated(0.1) benign(0.014) TCGA-06-5416-01 1 59004702 59004702 C A OMA1 Nonsense_Mutation p.E89* 0.20 TCGA-06-5416-01 1 59041927 59041927 C A TACSTD2 Missense_Mutation p.R301I 0.21 deleterious(0.03) possibly_damaging(0.489) TCGA-06-5416-01 1 59160813 59160813 C A MYSM1 Missense_Mutation p.E45D 0.19 tolerated(0.72) benign(0.001) TCGA-06-5416-01 1 59248485 59248485 C T JUN Silent p.G86G 0.46 TCGA-06-5416-01 1 5993255 5993255 C T NPHP4 Silent p.S418S 0.41 TCGA-06-5416-01 1 60019833 60019833 C A FGGY Silent p.I279I 0.19 TCGA-06-5416-01 1 60314111 60314111 C A HOOK1 Missense_Mutation p.H352N 0.23 deleterious(0) possibly_damaging(0.761) TCGA-06-5416-01 1 60505813 60505813 C T C1orf87 Missense_Mutation p.A175T 0.45 tolerated(0.97) benign(0) TCGA-06-5416-01 1 60521104 60521104 C A C1orf87 Missense_Mutation p.E38D 0.19 tolerated(0.23) benign(0.118) TCGA-06-5416-01 1 6100625 6100625 C T AL035406.1 3'Flank 0.23 TCGA-06-5416-01 1 6158631 6158631 C A KCNAB2 Silent p.S415S 0.22 TCGA-06-5416-01 1 6166331 6166331 C T CHD5 3'UTR 0.25 TCGA-06-5416-01 1 6185666 6185666 C T CHD5 Missense_Mutation p.R1393Q 0.29 deleterious(0.03) benign(0.298) TCGA-06-5416-01 1 6188990 6188990 C T CHD5 Missense_Mutation p.G1176D 0.22 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 1 6202389 6202389 C T CHD5 Splice_Site p.X746_splice 0.15 TCGA-06-5416-01 1 6206310 6206310 C A CHD5 Missense_Mutation p.K588N 0.20 deleterious(0.03) benign(0.443) TCGA-06-5416-01 1 6206746 6206746 G A CHD5 Silent p.C523C 0.20 TCGA-06-5416-01 1 62261146 62261146 T G INADL Silent p.A392A 0.24 TCGA-06-5416-01 1 62293130 62293130 G T INADL Nonsense_Mutation p.E619* 0.49 TCGA-06-5416-01 1 62327328 62327328 G A INADL Missense_Mutation p.E810K 0.37 deleterious(0.02) probably_damaging(0.932) TCGA-06-5416-01 1 62327331 62327331 G T INADL Missense_Mutation p.A811S 0.14 tolerated(0.12) probably_damaging(0.977) TCGA-06-5416-01 1 62330228 62330228 G A INADL Missense_Mutation p.E920K 0.20 tolerated(0.15) benign(0.012) TCGA-06-5416-01 1 62672751 62672751 G A L1TD1 Missense_Mutation p.E151K 0.43 tolerated(0.06) unknown(0) TCGA-06-5416-01 1 62672805 62672805 G A L1TD1 Missense_Mutation p.E169K 0.25 tolerated(1) unknown(0) TCGA-06-5416-01 1 6267536 6267536 C T RNF207 Missense_Mutation p.R97C 0.26 tolerated(0.18) benign(0.013) TCGA-06-5416-01 1 62713308 62713308 C T KANK4 Missense_Mutation p.D907N 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-06-5416-01 1 62732478 62732478 C A KANK4 Nonsense_Mutation p.E749* 0.38 TCGA-06-5416-01 1 62740011 62740011 C A KANK4 Missense_Mutation p.Q255H 0.39 deleterious(0.03) benign(0.276) TCGA-06-5416-01 1 62905469 62905469 G A USP1 Splice_Site 0.48 TCGA-06-5416-01 1 62910420 62910420 C A USP1 Missense_Mutation p.P190H 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 62916018 62916018 G T USP1 Missense_Mutation p.S575I 0.42 tolerated(0.23) benign(0.005) TCGA-06-5416-01 1 62941527 62941527 G A DOCK7 Missense_Mutation p.L1907F 0.45 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 1 62973631 62973631 A G DOCK7 Splice_Site p.X1461_splice 0.25 TCGA-06-5416-01 1 62973677 62973677 C T DOCK7 Missense_Mutation p.E1447K 0.38 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 1 62979388 62979388 T G DOCK7 Missense_Mutation p.K1342T 0.43 deleterious(0.04) probably_damaging(0.909) TCGA-06-5416-01 1 63003594 63003594 G A DOCK7 Missense_Mutation p.P1116S 0.19 tolerated(0.13) probably_damaging(0.991) TCGA-06-5416-01 1 63005304 63005304 T G DOCK7 Missense_Mutation p.N1040T 0.44 deleterious(0.02) possibly_damaging(0.891) TCGA-06-5416-01 1 63009365 63009365 A C DOCK7 Missense_Mutation p.F940V 0.17 tolerated(0.52) benign(0.01) TCGA-06-5416-01 1 63085591 63085591 C T DOCK7 Missense_Mutation p.R500Q 0.33 deleterious(0.01) probably_damaging(0.951) TCGA-06-5416-01 1 63284886 63284886 C A ATG4C Missense_Mutation p.S202Y 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 63836619 63836619 T C ALG6 5'UTR 0.19 TCGA-06-5416-01 1 64605926 64605926 C T ROR1 Missense_Mutation p.R249C 0.24 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 1 64644006 64644006 C A ROR1 Missense_Mutation p.P761H 0.43 deleterious(0.02) probably_damaging(0.94) TCGA-06-5416-01 1 64669720 64669720 C A UBE2U 5'UTR 0.45 TCGA-06-5416-01 1 64669772 64669772 C A UBE2U Missense_Mutation p.F13L 0.41 tolerated(0.42) benign(0.058) TCGA-06-5416-01 1 65107575 65107575 C T CACHD1 Missense_Mutation p.A309V 0.43 tolerated(0.09) possibly_damaging(0.46) TCGA-06-5416-01 1 65124487 65124487 C A CACHD1 Missense_Mutation p.L577M 0.22 tolerated(0.18) benign(0.051) TCGA-06-5416-01 1 6521633 6521633 C T TNFRSF25 Missense_Mutation p.R381Q 0.46 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 6531110 6531110 G T PLEKHG5 Silent p.G523G 0.69 TCGA-06-5416-01 1 65330525 65330525 T C JAK1 Missense_Mutation p.H374R 0.07 deleterious(0) benign(0.362) TCGA-06-5416-01 1 65332883 65332883 C T JAK1 Missense_Mutation p.R219Q 0.23 tolerated(0.26) benign(0.165) TCGA-06-5416-01 1 65849957 65849957 C T DNAJC6 Nonsense_Mutation p.R250* 0.25 TCGA-06-5416-01 1 65855030 65855030 A G DNAJC6 Missense_Mutation p.I429V 0.19 tolerated(0.12) benign(0.001) TCGA-06-5416-01 1 6585909 6585909 G A NOL9 3'UTR 0.41 TCGA-06-5416-01 1 66098921 66098921 G T LEPR Intron 0.46 TCGA-06-5416-01 1 6640730 6640730 G A ZBTB48 Missense_Mutation p.E21K 0.40 tolerated(0.08) possibly_damaging(0.903) TCGA-06-5416-01 1 6646807 6646807 G A ZBTB48 Missense_Mutation p.R366Q 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 1 6674149 6674149 C T PHF13 Missense_Mutation p.A8V 0.55 tolerated(0.51) benign(0.012) TCGA-06-5416-01 1 67194949 67194949 G A SGIP1 Missense_Mutation p.C582Y 0.37 deleterious(0.01) probably_damaging(0.949) TCGA-06-5416-01 1 67207012 67207012 C A SGIP1 Missense_Mutation p.P786Q 0.22 tolerated(0.23) benign(0.246) TCGA-06-5416-01 1 67266924 67266924 G A INSL5 5'UTR 0.12 TCGA-06-5416-01 1 67303294 67303294 A G WDR78 Intron 0.19 TCGA-06-5416-01 1 67327886 67327886 G A WDR78 Missense_Mutation p.A347V 0.46 tolerated(0.07) benign(0.005) TCGA-06-5416-01 1 67451939 67451939 G A MIER1 3'Flank 0.38 TCGA-06-5416-01 1 67518501 67518501 G A SLC35D1 Missense_Mutation p.L93F 0.21 tolerated(0.76) benign(0.007) TCGA-06-5416-01 1 67558535 67558535 A G C1orf141 3'UTR 0.36 TCGA-06-5416-01 1 67558621 67558621 T A C1orf141 3'UTR 0.16 TCGA-06-5416-01 1 6761806 6761806 G A DNAJC11 Silent p.L19L 0.50 TCGA-06-5416-01 1 67648614 67648614 G T IL23R Missense_Mutation p.D155Y 0.23 deleterious(0.01) benign(0.071) TCGA-06-5416-01 1 67672607 67672607 G A IL23R Missense_Mutation p.A223T 0.41 tolerated(0.53) benign(0.002) TCGA-06-5416-01 1 67685263 67685263 G T IL23R Nonsense_Mutation p.E269* 0.07 TCGA-06-5416-01 1 67724500 67724500 C T IL23R Missense_Mutation p.H527Y 0.23 tolerated(1) possibly_damaging(0.607) TCGA-06-5416-01 1 67787435 67787435 G T IL12RB2 Missense_Mutation p.R76I 0.22 tolerated(0.06) benign(0.178) TCGA-06-5416-01 1 67793926 67793926 G T IL12RB2 Missense_Mutation p.D175Y 0.21 deleterious(0.05) benign(0.086) TCGA-06-5416-01 1 67795371 67795371 C T IL12RB2 Nonsense_Mutation p.R256* 0.45 TCGA-06-5416-01 1 67885692 67885692 C A SERBP1 Missense_Mutation p.E332D 0.18 tolerated(1) benign(0.02) TCGA-06-5416-01 1 68512367 68512367 C T DIRAS3 Missense_Mutation p.G205D 0.13 tolerated(0.22) benign(0) TCGA-06-5416-01 1 68619221 68619221 C T WLS Missense_Mutation p.R259Q 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 70611496 70611496 C T LRRC40 Missense_Mutation p.R599Q 0.37 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 1 70618192 70618192 C T LRRC40 Missense_Mutation p.D455N 0.41 tolerated(1) benign(0) TCGA-06-5416-01 1 70900841 70900841 G A CTH Missense_Mutation p.E345K 0.46 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 1 72058651 72058651 C T NEGR1 Silent p.K263K 0.24 TCGA-06-5416-01 1 74649284 74649284 C A LRRIQ3 Missense_Mutation p.D29Y 0.40 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 1 74957868 74957868 C T TNNI3K Missense_Mutation p.R858W 0.23 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-06-5416-01 1 75009691 75009691 G T TNNI3K 3'UTR 0.15 TCGA-06-5416-01 1 75036916 75036916 G A C1orf173 Missense_Mutation p.A1493V 0.06 tolerated(0.33) benign(0.084) TCGA-06-5416-01 1 75037335 75037335 G A C1orf173 Silent p.A1353A 0.44 TCGA-06-5416-01 1 75037471 75037471 G A C1orf173 Missense_Mutation p.A1308V 0.24 tolerated(1) benign(0) TCGA-06-5416-01 1 75038568 75038568 G A C1orf173 Silent p.V942V 0.20 TCGA-06-5416-01 1 75038611 75038611 G A C1orf173 Missense_Mutation p.S928L 0.05 tolerated(0.32) benign(0) TCGA-06-5416-01 1 75055274 75055274 G C C1orf173 Intron 0.17 TCGA-06-5416-01 1 75190466 75190466 A C CRYZ Missense_Mutation p.F14V 0.41 tolerated(0.55) benign(0.008) TCGA-06-5416-01 1 75679669 75679669 G A SLC44A5 Missense_Mutation p.A603V 0.25 tolerated(0.58) benign(0.19) TCGA-06-5416-01 1 76198367 76198367 C T ACADM Missense_Mutation p.R57C 0.42 deleterious(0.03) benign(0.172) TCGA-06-5416-01 1 76226948 76226948 G T ACADM Missense_Mutation p.D367Y 0.20 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 1 76228379 76228379 T G ACADM Missense_Mutation p.I403M 0.06 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 1 76280754 76280754 G T MSH4 Nonsense_Mutation p.G250* 0.19 TCGA-06-5416-01 1 76344684 76344684 A C MSH4 Silent p.I516I 0.37 TCGA-06-5416-01 1 76387768 76387768 T G ASB17 Silent p.I226I 0.24 TCGA-06-5416-01 1 76779547 76779547 C T ST6GALNAC3 Missense_Mutation p.R26C 0.18 possibly_damaging(0.876) TCGA-06-5416-01 1 76877841 76877841 G A ST6GALNAC3 Missense_Mutation p.R121H 0.20 benign(0.007) TCGA-06-5416-01 1 76877908 76877908 T G ST6GALNAC3 Missense_Mutation p.F143L 0.44 probably_damaging(0.963) TCGA-06-5416-01 1 77333196 77333196 G A ST6GALNAC5 5'UTR 0.12 TCGA-06-5416-01 1 77528857 77528857 C A ST6GALNAC5 Missense_Mutation p.A326D 0.30 benign(0.209) TCGA-06-5416-01 1 77558015 77558015 T G PIGK 3'UTR 0.17 TCGA-06-5416-01 1 77632504 77632504 C A PIGK Missense_Mutation p.E129D 0.20 deleterious(0.01) benign(0.424) TCGA-06-5416-01 1 77635016 77635016 C A PIGK Missense_Mutation p.V102L 0.28 deleterious(0.02) possibly_damaging(0.874) TCGA-06-5416-01 1 77672385 77672385 C T PIGK Missense_Mutation p.R60Q 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 77676120 77676120 C A PIGK Splice_Site p.X49_splice 0.29 TCGA-06-5416-01 1 78001669 78001669 C T AK5 Silent p.Y522Y 0.15 TCGA-06-5416-01 1 78031235 78031235 G A ZZZ3 3'UTR 0.24 TCGA-06-5416-01 1 7805904 7805904 G A CAMTA1 Splice_Site p.X1457_splice 0.38 TCGA-06-5416-01 1 7806106 7806106 C T CAMTA1 Silent p.L1524L 0.20 TCGA-06-5416-01 1 78098304 78098304 C T ZZZ3 Missense_Mutation p.D246N 0.18 tolerated(0.51) benign(0) TCGA-06-5416-01 1 78162896 78162896 G - USP33 3'UTR 0.33 TCGA-06-5416-01 1 78162938 78162938 C T USP33 3'UTR 0.41 TCGA-06-5416-01 1 78183689 78183689 A C USP33 Missense_Mutation p.F625C 0.20 deleterious(0) possibly_damaging(0.841) TCGA-06-5416-01 1 78383415 78383415 G A NEXN Silent p.E64E 0.18 TCGA-06-5416-01 1 78408152 78408152 G T NEXN Nonsense_Mutation p.E556* 0.21 TCGA-06-5416-01 1 78430392 78430392 C T FUBP1 Missense_Mutation p.G259D 0.38 tolerated(0.15) benign(0.119) TCGA-06-5416-01 1 78546402 78546402 G T GIPC2 Missense_Mutation p.R95I 0.12 deleterious(0) benign(0.24) TCGA-06-5416-01 1 7858683 7858683 C T PER3 Missense_Mutation p.S247L 0.39 deleterious(0.02) possibly_damaging(0.602) TCGA-06-5416-01 1 78959024 78959024 G T PTGFR Missense_Mutation p.R199I 0.49 tolerated(0.5) benign(0.438) TCGA-06-5416-01 1 79093951 79093951 G A IFI44L Silent p.S117S 0.28 TCGA-06-5416-01 1 79106731 79106731 T G IFI44L Silent p.T358T 0.16 TCGA-06-5416-01 1 79107534 79107534 C A IFI44L 3'UTR 0.41 TCGA-06-5416-01 1 79116117 79116117 T A IFI44 Silent p.L79L 0.05 TCGA-06-5416-01 1 79125165 79125165 G A IFI44 Missense_Mutation p.A337T 0.18 deleterious(0.03) benign(0.033) TCGA-06-5416-01 1 79383697 79383697 G T ELTD1 Missense_Mutation p.F500L 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 1 8037800 8037800 T C PARK7 Splice_Site p.X137_splice 0.28 TCGA-06-5416-01 1 8074252 8074252 G A ERRFI1 Missense_Mutation p.S136F 0.46 tolerated_low_confidence(0.45) benign(0.444) TCGA-06-5416-01 1 809740 809740 T G FAM41C 5'Flank 0.45 TCGA-06-5416-01 1 82445638 82445638 A G LPHN2 Missense_Mutation p.N1019S 0.49 tolerated(0.1) benign(0.087) TCGA-06-5416-01 1 82450361 82450361 C T LPHN2 Missense_Mutation p.T1109I 0.19 tolerated(0.18) possibly_damaging(0.543) TCGA-06-5416-01 1 84415655 84415655 C A TTLL7 Missense_Mutation p.D58Y 0.17 deleterious(0) possibly_damaging(0.61) TCGA-06-5416-01 1 85020746 85020746 G T CTBS Missense_Mutation p.A365D 0.23 tolerated(0.11) benign(0.194) TCGA-06-5416-01 1 85035754 85035754 A C CTBS Missense_Mutation p.L129V 0.43 tolerated(0.06) benign(0.078) TCGA-06-5416-01 1 85128033 85128033 G T SSX2IP Missense_Mutation p.L259I 0.17 tolerated(0.12) benign(0.44) TCGA-06-5416-01 1 85331265 85331265 G A LPAR3 Missense_Mutation p.A180V 0.21 tolerated(0.05) probably_damaging(0.999) TCGA-06-5416-01 1 85431253 85431253 C A MCOLN2 Missense_Mutation p.K72N 0.41 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 1 85648005 85648005 T G SYDE2 Missense_Mutation p.K774Q 0.17 tolerated(0.17) possibly_damaging(0.721) TCGA-06-5416-01 1 85648340 85648340 G T SYDE2 Missense_Mutation p.A662D 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 85648510 85648510 C A SYDE2 Missense_Mutation p.Q605H 0.19 deleterious(0.03) possibly_damaging(0.519) TCGA-06-5416-01 1 85655833 85655833 C T SYDE2 Missense_Mutation p.E450K 0.22 deleterious(0.02) possibly_damaging(0.521) TCGA-06-5416-01 1 85665935 85665935 C A SYDE2 Missense_Mutation p.D249Y 0.18 deleterious_low_confidence(0.02) possibly_damaging(0.907) TCGA-06-5416-01 1 85930551 85930551 G T DDAH1 Missense_Mutation p.L60M 0.52 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 86047050 86047050 G A CYR61 Silent p.A22A 0.19 TCGA-06-5416-01 1 86172138 86172138 G A ZNHIT6 Nonsense_Mutation p.R237* 0.22 TCGA-06-5416-01 1 86200595 86200595 G A COL24A1 Missense_Mutation p.S1612L 0.23 deleterious(0.01) benign(0.099) TCGA-06-5416-01 1 86307783 86307783 G A COL24A1 Missense_Mutation p.P1180S 0.21 tolerated(0.35) benign(0.06) TCGA-06-5416-01 1 86591103 86591103 C A COL24A1 Nonsense_Mutation p.E306* 0.23 TCGA-06-5416-01 1 8684423 8684423 C T RERE Silent p.E114E 0.47 TCGA-06-5416-01 1 86848686 86848686 C A ODF2L Splice_Site p.X146_splice 0.48 TCGA-06-5416-01 1 86850427 86850427 C A ODF2L Nonsense_Mutation p.E102* 0.27 TCGA-06-5416-01 1 86898086 86898086 G C CLCA2 Missense_Mutation p.E207Q 0.18 tolerated(1) probably_damaging(0.995) TCGA-06-5416-01 1 86904627 86904627 C A CLCA2 Silent p.T347T 0.17 TCGA-06-5416-01 1 86909557 86909557 T C CLCA2 Missense_Mutation p.F526L 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 86934519 86934519 G T CLCA1 5'UTR 0.27 TCGA-06-5416-01 1 86939489 86939489 G T CLCA1 Missense_Mutation p.E127D 0.41 tolerated(0.16) benign(0.022) TCGA-06-5416-01 1 87041152 87041152 C A CLCA4 Missense_Mutation p.F607L 0.20 deleterious(0.04) possibly_damaging(0.85) TCGA-06-5416-01 1 87045660 87045660 C A CLCA4 Missense_Mutation p.L798I 0.46 tolerated(0.08) benign(0.039) TCGA-06-5416-01 1 8716155 8716155 C T RERE Missense_Mutation p.A68T 0.19 benign(0.038) TCGA-06-5416-01 1 87208010 87208010 C A SH3GLB1 Missense_Mutation p.S315Y 0.15 deleterious(0.02) benign(0.269) TCGA-06-5416-01 1 87369047 87369047 G T SEP15 Missense_Mutation p.L54I 0.17 tolerated(0.2) possibly_damaging(0.882) TCGA-06-5416-01 1 87558268 87558268 G T HS2ST1 Missense_Mutation p.E168D 0.15 tolerated(1) benign(0.002) TCGA-06-5416-01 1 87558333 87558333 G A HS2ST1 Missense_Mutation p.R190Q 0.21 deleterious(0.04) benign(0.168) TCGA-06-5416-01 1 878678 878678 C T SAMD11 Missense_Mutation p.P537L 0.11 tolerated(1) benign(0.002) TCGA-06-5416-01 1 89271666 89271666 C A PKN2 Missense_Mutation p.S590Y 0.16 tolerated(0.07) benign(0.308) TCGA-06-5416-01 1 89299112 89299112 A G PKN2 Missense_Mutation p.Y979C 0.15 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 1 89318940 89318940 C A GTF2B Missense_Mutation p.D303Y 0.45 tolerated(0.08) possibly_damaging(0.535) TCGA-06-5416-01 1 89323000 89323000 C A GTF2B Missense_Mutation p.A236S 0.23 tolerated(0.15) possibly_damaging(0.716) TCGA-06-5416-01 1 89418773 89418773 C T CCBL2 Silent p.T309T 0.46 TCGA-06-5416-01 1 89448670 89448670 G T RBMXL1 Silent p.S280S 0.08 TCGA-06-5416-01 1 89448996 89448996 G A RBMXL1 Missense_Mutation p.R172C 0.23 deleterious(0.03) benign(0.022) TCGA-06-5416-01 1 89474677 89474677 C T GBP3 Missense_Mutation p.A538T 0.16 tolerated(0.24) benign(0.101) TCGA-06-5416-01 1 89479939 89479939 C T GBP3 Missense_Mutation p.R151Q 0.45 tolerated(0.1) benign(0.018) TCGA-06-5416-01 1 89520817 89520817 C T GBP1 Missense_Mutation p.E484K 0.35 tolerated(0.15) benign(0.001) TCGA-06-5416-01 1 89582806 89582806 G C GBP2 Missense_Mutation p.A246G 0.17 tolerated(0.28) benign(0.004) TCGA-06-5416-01 1 89651143 89651143 C A GBP4 Nonsense_Mutation p.E573* 0.18 TCGA-06-5416-01 1 89843984 89843984 C T GBP6 Missense_Mutation p.T146M 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 89848272 89848272 C A GBP6 Nonsense_Mutation p.S401* 0.20 TCGA-06-5416-01 1 89889997 89889997 C T GBP1P1 RNA 0.22 TCGA-06-5416-01 1 90048570 90048570 T A LRRC8B Missense_Mutation p.F121I 0.14 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 1 90178646 90178646 C T LRRC8C Missense_Mutation p.R173W 0.42 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 1 90179700 90179700 C A LRRC8C Missense_Mutation p.S524Y 0.27 tolerated(1) benign(0.024) TCGA-06-5416-01 1 90399930 90399930 G T LRRC8D Missense_Mutation p.G435C 0.20 deleterious(0) possibly_damaging(0.868) TCGA-06-5416-01 1 906242 906242 C A PLEKHN1 Intron 0.23 TCGA-06-5416-01 1 9074801 9074801 C T SLC2A7 Missense_Mutation p.R281H 0.29 deleterious(0.02) possibly_damaging(0.563) TCGA-06-5416-01 1 9074879 9074879 T C SLC2A7 Missense_Mutation p.D255G 0.62 deleterious(0.03) benign(0.393) TCGA-06-5416-01 1 9079363 9079363 A C SLC2A7 Missense_Mutation p.F114C 0.47 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 1 91404394 91404394 G A ZNF644 Silent p.V839V 0.21 TCGA-06-5416-01 1 91405533 91405533 G A ZNF644 Missense_Mutation p.R460C 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 1 91406058 91406058 T C ZNF644 Missense_Mutation p.I285V 0.46 tolerated(1) benign(0) TCGA-06-5416-01 1 9171454 9171454 C T GPR157 Missense_Mutation p.D160N 0.22 tolerated(0.89) benign(0.034) TCGA-06-5416-01 1 91859650 91859650 C A HFM1 Missense_Mutation p.R165I 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.577) TCGA-06-5416-01 1 91861955 91861955 C A HFM1 Missense_Mutation p.D27Y 0.15 tolerated_low_confidence(0.25) benign(0.429) TCGA-06-5416-01 1 92161275 92161275 G A TGFBR3 Silent p.I797I 0.43 TCGA-06-5416-01 1 92193251 92193251 T C TGFBR3 Missense_Mutation p.K284E 0.42 tolerated(0.05) possibly_damaging(0.858) TCGA-06-5416-01 1 92200503 92200503 G T TGFBR3 Missense_Mutation p.S133Y 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 92554273 92554273 C T BTBD8 Silent p.F56F 0.36 TCGA-06-5416-01 1 92767066 92767066 G T RPAP2 Missense_Mutation p.K51N 0.14 deleterious(0) possibly_damaging(0.632) TCGA-06-5416-01 1 92941620 92941620 C T GFI1 Missense_Mutation p.R412Q 0.51 deleterious(0.03) probably_damaging(0.992) TCGA-06-5416-01 1 93089890 93089890 C T EVI5 Missense_Mutation p.R541H 0.06 tolerated(0.09) possibly_damaging(0.466) TCGA-06-5416-01 1 93131499 93131499 T G EVI5 Missense_Mutation p.E447D 0.24 deleterious(0) possibly_damaging(0.667) TCGA-06-5416-01 1 9323758 9323758 C T H6PD Silent p.I402I 0.59 TCGA-06-5416-01 1 93602498 93602498 G A MTF2 Missense_Mutation p.E566K 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 1 93672738 93672738 C T CCDC18 Missense_Mutation p.A385V 0.29 deleterious(0.04) benign(0.287) TCGA-06-5416-01 1 93680314 93680314 G T CCDC18 Missense_Mutation p.D557Y 0.22 tolerated(1) benign(0.031) TCGA-06-5416-01 1 93724375 93724375 G T CCDC18 Missense_Mutation p.R1259I 0.21 deleterious(0) possibly_damaging(0.888) TCGA-06-5416-01 1 93826281 93826281 T G DR1 3'UTR 0.18 TCGA-06-5416-01 1 94057835 94057835 C T BCAR3 Missense_Mutation p.R158H 0.43 tolerated(0.25) possibly_damaging(0.86) TCGA-06-5416-01 1 94140423 94140423 C T BCAR3 Missense_Mutation p.A22T 0.15 tolerated_low_confidence(0.05) possibly_damaging(0.737) TCGA-06-5416-01 1 94463498 94463498 C T ABCA4 Silent p.A2216A 0.40 TCGA-06-5416-01 1 94486795 94486795 C T ABCA4 Splice_Site p.X1673_splice 0.44 TCGA-06-5416-01 1 94512515 94512515 C T ABCA4 Missense_Mutation p.A960T 0.25 deleterious(0.02) possibly_damaging(0.848) TCGA-06-5416-01 1 94564355 94564355 G A ABCA4 Missense_Mutation p.R255C 0.44 deleterious(0.01) possibly_damaging(0.677) TCGA-06-5416-01 1 94574221 94574221 C T ABCA4 Silent p.E118E 0.20 TCGA-06-5416-01 1 94574264 94574264 C A ABCA4 Missense_Mutation p.R104M 0.21 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 1 94639802 94639802 C A ARHGAP29 Nonsense_Mutation p.E1137* 0.19 TCGA-06-5416-01 1 94639883 94639883 T G ARHGAP29 Missense_Mutation p.S1110R 0.49 tolerated(0.1) benign(0.221) TCGA-06-5416-01 1 94643458 94643458 C T ARHGAP29 Missense_Mutation p.E916K 0.22 deleterious(0.02) benign(0.242) TCGA-06-5416-01 1 94674868 94674868 C T ARHGAP29 Missense_Mutation p.D127N 0.16 tolerated(0.06) possibly_damaging(0.647) TCGA-06-5416-01 1 94946071 94946071 C T ABCD3 Nonsense_Mutation p.R246* 0.21 TCGA-06-5416-01 1 94964161 94964161 C T ABCD3 Nonsense_Mutation p.R464* 0.20 TCGA-06-5416-01 1 94964528 94964528 C T ABCD3 Nonsense_Mutation p.R520* 0.18 TCGA-06-5416-01 1 95307644 95307644 C T SLC44A3 Silent p.C283C 0.48 TCGA-06-5416-01 1 95310869 95310869 G T SLC44A3 Missense_Mutation p.K307N 0.24 deleterious(0) probably_damaging(0.924) TCGA-06-5416-01 1 97250742 97250742 C A PTBP2 Missense_Mutation p.S279Y 0.22 tolerated(0.22) benign(0.168) TCGA-06-5416-01 1 9775820 9775820 C T PIK3CD Silent p.I121I 0.23 TCGA-06-5416-01 1 98015242 98015242 T C DPYD Silent p.P466P 0.19 TCGA-06-5416-01 1 98015259 98015259 G T DPYD Missense_Mutation p.L461I 0.16 deleterious(0.02) benign(0.097) TCGA-06-5416-01 1 983037 983037 C T AGRN Missense_Mutation p.R1201C 0.16 tolerated(0.05) probably_damaging(0.995) TCGA-06-5416-01 1 984964 984964 C T AGRN Silent p.F1511F 0.42 TCGA-06-5416-01 1 99358624 99358624 G A LPPR5 3'UTR 0.39 TCGA-06-5416-01 20 10026268 10026268 C T ANKEF1 Missense_Mutation p.S248L 0.45 tolerated(0.05) benign(0.084) TCGA-06-5416-01 20 10035116 10035116 C A ANKEF1 Missense_Mutation p.L681M 0.33 tolerated(0.24) possibly_damaging(0.45) TCGA-06-5416-01 20 10036237 10036237 G A ANKEF1 Missense_Mutation p.D754N 0.21 tolerated(0.09) benign(0.011) TCGA-06-5416-01 20 10273537 10273537 C T SNAP25 Intron 0.42 TCGA-06-5416-01 20 10603921 10603921 A G SLX4IP Missense_Mutation p.N374S 0.17 tolerated(0.19) benign(0.124) TCGA-06-5416-01 20 10620004 10620004 G C JAG1 3'UTR 0.49 TCGA-06-5416-01 20 10628654 10628654 C T JAG1 Silent p.K558K 0.19 TCGA-06-5416-01 20 10629243 10629243 C A JAG1 Missense_Mutation p.R508I 0.45 deleterious(0) benign(0.26) TCGA-06-5416-01 20 1099377 1099377 G A PSMF1 5'UTR 0.23 TCGA-06-5416-01 20 1115690 1115690 C T PSMF1 Intron 0.23 TCGA-06-5416-01 20 1146830 1146830 C A PSMF1 3'UTR 0.20 TCGA-06-5416-01 20 13134721 13134721 A G SPTLC3 Missense_Mutation p.I451V 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 20 1356152 1356152 C T FKBP1A Missense_Mutation p.E61K 0.14 deleterious(0) possibly_damaging(0.878) TCGA-06-5416-01 20 13695769 13695769 A C ESF1 Missense_Mutation p.L770V 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 20 13755906 13755906 C T ESF1 Missense_Mutation p.R349Q 0.17 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 20 13763672 13763672 G A ESF1 Nonsense_Mutation p.R39* 0.22 TCGA-06-5416-01 20 13765779 13765779 A C NDUFAF5 Missense_Mutation p.E22A 0.33 tolerated(0.7) benign(0) TCGA-06-5416-01 20 13830921 13830921 C T SEL1L2 Silent p.T508T 0.18 TCGA-06-5416-01 20 139668 139668 C A DEFB127 3'UTR 0.34 TCGA-06-5416-01 20 1424412 1424412 G A NSFL1C Silent p.I367I 0.46 TCGA-06-5416-01 20 1424419 1424419 G A NSFL1C Missense_Mutation p.A365V 0.22 deleterious(0.01) possibly_damaging(0.78) TCGA-06-5416-01 20 14307132 14307132 G A FLRT3 Missense_Mutation p.R341C 0.20 deleterious(0) probably_damaging(0.97) TCGA-06-5416-01 20 1457786 1457786 G A SIRPB2 Intron 0.71 TCGA-06-5416-01 20 1559074 1559074 C T RP4-576H24.4 Missense_Mutation p.A114T 0.22 tolerated(0.48) benign(0.162) TCGA-06-5416-01 20 1592143 1592143 C T SIRPB1 Intron 0.42 TCGA-06-5416-01 20 15967391 15967391 G A MACROD2 Silent p.T335T 0.16 TCGA-06-5416-01 20 16316609 16316609 G A KIF16B Nonsense_Mutation p.R410* 0.19 TCGA-06-5416-01 20 16348107 16348107 C T KIF16B Missense_Mutation p.R1288Q 0.19 tolerated_low_confidence(0.39) benign(0) TCGA-06-5416-01 20 16352371 16352371 C T KIF16B Missense_Mutation p.R1129H 0.13 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 20 16360492 16360492 C T KIF16B Missense_Mutation p.E719K 0.43 tolerated(0.05) benign(0.259) TCGA-06-5416-01 20 16362364 16362364 C T KIF16B Missense_Mutation p.E605K 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 20 16410620 16410620 G A KIF16B Missense_Mutation p.T437I 0.20 deleterious(0.01) probably_damaging(0.988) TCGA-06-5416-01 20 16488663 16488663 C T KIF16B Silent p.A213A 0.39 TCGA-06-5416-01 20 16712818 16712818 G T SNRPB2 Missense_Mutation p.R25I 0.42 deleterious(0.02) possibly_damaging(0.707) TCGA-06-5416-01 20 16731791 16731791 G T OTOR 3'UTR 0.32 TCGA-06-5416-01 20 17434596 17434596 C T PCSK2 Silent p.A365A 0.16 TCGA-06-5416-01 20 17462378 17462378 C T PCSK2 Missense_Mutation p.S527F 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 17475594 17475594 C T BFSP1 Missense_Mutation p.E375K 0.21 deleterious(0.03) benign(0.346) TCGA-06-5416-01 20 17479597 17479597 C T BFSP1 Missense_Mutation p.R275H 0.19 deleterious(0) probably_damaging(0.948) TCGA-06-5416-01 20 17479637 17479637 C T BFSP1 Missense_Mutation p.D262N 0.41 tolerated(0.06) possibly_damaging(0.663) TCGA-06-5416-01 20 17608230 17608230 C A RRBP1 Missense_Mutation p.E516D 0.13 tolerated(0.05) benign(0.388) TCGA-06-5416-01 20 17639349 17639349 A G RRBP1 Intron 0.17 TCGA-06-5416-01 20 17639438 17639438 C T RRBP1 Intron 0.27 TCGA-06-5416-01 20 17640970 17640970 C T RRBP1 Silent p.K61K 0.19 TCGA-06-5416-01 20 17716508 17716508 C A BANF2 3'Flank 0.16 TCGA-06-5416-01 20 18022236 18022236 G T OVOL2 Missense_Mutation p.F151L 0.21 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 20 18143041 18143041 G A CSRP2BP Missense_Mutation p.D375N 0.37 tolerated(0.16) possibly_damaging(0.691) TCGA-06-5416-01 20 18163902 18163902 C A CSRP2BP Silent p.I648I 0.41 TCGA-06-5416-01 20 18370375 18370375 C T DZANK1 Missense_Mutation p.R663K 0.18 tolerated(0.83) benign(0.021) TCGA-06-5416-01 20 18374406 18374406 C T DZANK1 Silent p.R586R 0.46 TCGA-06-5416-01 20 18379232 18379232 G A DZANK1 Missense_Mutation p.L491F 0.20 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 20 18476488 18476488 C T RBBP9 Missense_Mutation p.D46N 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 18506519 18506519 G A SEC23B Silent p.G259G 0.43 TCGA-06-5416-01 20 18531778 18531778 C A SEC23B Missense_Mutation p.L651M 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 19565615 19565615 C T SLC24A3 Missense_Mutation p.R142C 0.13 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 20 19634768 19634768 C T SLC24A3 Silent p.I225I 0.24 TCGA-06-5416-01 20 1963660 1963660 G A PDYN Missense_Mutation p.S24L 0.30 deleterious(0) possibly_damaging(0.756) TCGA-06-5416-01 20 19665995 19665995 C T SLC24A3 Silent p.F438F 0.43 TCGA-06-5416-01 20 19701822 19701822 C A SLC24A3 3'UTR 0.22 TCGA-06-5416-01 20 19972826 19972826 G A RIN2 Missense_Mutation p.A744T 0.13 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 20013938 20013938 C A NAA20 3'UTR 0.49 TCGA-06-5416-01 20 20021357 20021357 C A CRNKL1 Missense_Mutation p.K587N 0.20 tolerated(0.3) benign(0.099) TCGA-06-5416-01 20 20037277 20037277 C A C20orf26 5'UTR 0.18 TCGA-06-5416-01 20 20150066 20150066 G A C20orf26 Silent p.E449E 0.39 TCGA-06-5416-01 20 20226858 20226858 G A C20orf26 Missense_Mutation p.D720N 0.26 tolerated(0.08) benign(0.024) TCGA-06-5416-01 20 20373753 20373753 G T RALGAPA2 3'UTR 0.18 TCGA-06-5416-01 20 20553705 20553705 G A RALGAPA2 Silent p.S905S 0.49 TCGA-06-5416-01 20 2097723 2097723 C T STK35 Missense_Mutation p.A435V 0.45 tolerated(0.06) benign(0.131) TCGA-06-5416-01 20 21143103 21143103 A G RP4-777D9.2 Intron 0.11 TCGA-06-5416-01 20 21143459 21143459 G A RP4-777D9.2 RNA 0.41 TCGA-06-5416-01 20 21309282 21309282 G A XRN2 Missense_Mutation p.R134Q 0.38 deleterious(0.04) benign(0.305) TCGA-06-5416-01 20 21324762 21324762 C A XRN2 Missense_Mutation p.S482Y 0.20 deleterious(0.01) benign(0.428) TCGA-06-5416-01 20 21687139 21687139 A G PAX1 Missense_Mutation p.N117S 0.20 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 20 2312781 2312781 C T TGM3 Silent p.V489V 0.23 TCGA-06-5416-01 20 2315864 2315864 C A TGM3 Missense_Mutation p.S582Y 0.24 deleterious(0.03) benign(0.158) TCGA-06-5416-01 20 23345986 23345986 C T GZF1 Silent p.C322C 0.26 TCGA-06-5416-01 20 23346256 23346256 C T GZF1 Silent p.C412C 0.49 TCGA-06-5416-01 20 23425407 23425407 G A CSTL1 Splice_Site p.X111_splice 0.19 TCGA-06-5416-01 20 23614637 23614637 C A CST3 Splice_Site p.X120_splice 0.41 TCGA-06-5416-01 20 23731353 23731353 C T CST1 Missense_Mutation p.A51T 0.17 tolerated(0.08) benign(0.435) TCGA-06-5416-01 20 2377210 2377210 C T TGM6 Silent p.S161S 0.20 TCGA-06-5416-01 20 2377244 2377244 C T TGM6 Nonsense_Mutation p.R173* 0.33 TCGA-06-5416-01 20 2380266 2380266 C T TGM6 Silent p.G244G 0.52 TCGA-06-5416-01 20 23966596 23966596 G A GGTLC1 Missense_Mutation p.S107L 0.41 deleterious(0.02) possibly_damaging(0.807) TCGA-06-5416-01 20 2474494 2474494 C A ZNF343 Missense_Mutation p.E16D 0.19 tolerated_low_confidence(0.11) benign(0.005) TCGA-06-5416-01 20 24952135 24952135 C T APMAP Missense_Mutation p.D167N 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 24988185 24988185 C T ACSS1 3'UTR 0.20 TCGA-06-5416-01 20 25197351 25197351 C T ENTPD6 Silent p.I259I 0.32 TCGA-06-5416-01 20 25204774 25204774 C T ENTPD6 Silent p.F408F 0.44 TCGA-06-5416-01 20 25273089 25273089 G A PYGB Missense_Mutation p.E673K 0.46 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 20 25397817 25397817 G A GINS1 Missense_Mutation p.R73Q 0.26 tolerated(0.24) benign(0.001) TCGA-06-5416-01 20 25457542 25457542 G A NINL Silent p.R795R 0.22 TCGA-06-5416-01 20 2552878 2552878 G A TMC2 Missense_Mutation p.G203D 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 25596944 25596944 G A NANP Nonsense_Mutation p.R122* 0.23 TCGA-06-5416-01 20 2559834 2559834 C A TMC2 Missense_Mutation p.Q230K 0.49 tolerated(0.32) benign(0.103) TCGA-06-5416-01 20 25655932 25655932 G A ZNF337 Silent p.G664G 0.40 TCGA-06-5416-01 20 257409 257409 A G C20orf96 Intron 0.42 TCGA-06-5416-01 20 2774946 2774946 C T CPXM1 Missense_Mutation p.V699M 0.42 tolerated(0.23) benign(0.028) TCGA-06-5416-01 20 2819385 2819385 G A PCED1A Missense_Mutation p.R151C 0.46 tolerated(0.08) probably_damaging(0.978) TCGA-06-5416-01 20 2819590 2819590 G A PCED1A Missense_Mutation p.R115C 0.21 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 20 2842745 2842745 C T VPS16 Missense_Mutation p.A347V 0.41 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 2843246 2843246 G A VPS16 Missense_Mutation p.E365K 0.21 deleterious(0.01) probably_damaging(0.982) TCGA-06-5416-01 20 2843299 2843299 G T VPS16 Missense_Mutation p.Q382H 0.17 deleterious(0.01) probably_damaging(0.988) TCGA-06-5416-01 20 29623177 29623177 C T FRG1B 5'UTR 0.04 TCGA-06-5416-01 20 29896329 29896329 C A DEFB116 Missense_Mutation p.K20N 0.44 deleterious(0.01) possibly_damaging(0.831) TCGA-06-5416-01 20 29960982 29960982 C T DEFB118 3'UTR 0.19 TCGA-06-5416-01 20 29976970 29976970 C T DEFB119 Missense_Mutation p.R42H 0.17 deleterious(0.03) probably_damaging(0.958) TCGA-06-5416-01 20 30028494 30028494 C A DEFB123 5'UTR 0.22 TCGA-06-5416-01 20 30072050 30072050 C T REM1 Silent p.G238G 0.62 TCGA-06-5416-01 20 30126026 30126026 C A HM13 Missense_Mutation p.F109L 0.19 deleterious(0.04) benign(0.327) TCGA-06-5416-01 20 3016538 3016538 C T PTPRA Nonsense_Mutation p.Q717* 0.20 TCGA-06-5416-01 20 3018746 3018746 T C PTPRA Silent p.I792I 0.21 TCGA-06-5416-01 20 30193462 30193462 A C ID1 Missense_Mutation p.K91T 0.12 deleterious(0) possibly_damaging(0.636) TCGA-06-5416-01 20 3025406 3025406 A G GNRH2 Missense_Mutation p.D79G 0.13 deleterious_low_confidence(0.01) probably_damaging(0.956) TCGA-06-5416-01 20 30418675 30418675 C T MYLK2 Silent p.D426D 0.19 TCGA-06-5416-01 20 30432409 30432409 G A FOXS1 Missense_Mutation p.P313S 0.26 deleterious(0.04) probably_damaging(0.996) TCGA-06-5416-01 20 30433011 30433011 C T FOXS1 Missense_Mutation p.R112H 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 20 30521644 30521644 G A TTLL9 Missense_Mutation p.D264N 0.21 tolerated(0.48) benign(0.179) TCGA-06-5416-01 20 30738431 30738431 C A TM9SF4 Missense_Mutation p.A365D 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 30785158 30785158 G A PLAGL2 Silent p.C196C 0.30 TCGA-06-5416-01 20 30789882 30789882 C T PLAGL2 Missense_Mutation p.A34T 0.18 tolerated(0.44) benign(0.002) TCGA-06-5416-01 20 30898432 30898432 C T KIF3B Silent p.D284D 0.36 TCGA-06-5416-01 20 31024730 31024730 C A ASXL1 Silent p.V1405V 0.49 TCGA-06-5416-01 20 31024856 31024856 C T ASXL1 Silent p.L1447L 0.15 TCGA-06-5416-01 20 3103212 3103212 C T UBOX5 Missense_Mutation p.E25K 0.19 deleterious(0) benign(0.44) TCGA-06-5416-01 20 3127867 3127867 C A FASTKD5 Missense_Mutation p.R617M 0.43 deleterious(0.01) possibly_damaging(0.45) TCGA-06-5416-01 20 3128950 3128950 C T FASTKD5 Missense_Mutation p.R256H 0.20 tolerated(0.14) benign(0.025) TCGA-06-5416-01 20 31291225 31291225 C T COMMD7 Missense_Mutation p.E188K 0.25 deleterious(0) possibly_damaging(0.869) TCGA-06-5416-01 20 3129554 3129554 T G FASTKD5 Missense_Mutation p.K55Q 0.25 tolerated(0.77) benign(0.007) TCGA-06-5416-01 20 31388692 31388692 G A DNMT3B Missense_Mutation p.D653N 0.19 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 20 31583459 31583459 G A SUN5 Missense_Mutation p.A167V 0.18 tolerated(0.06) benign(0.025) TCGA-06-5416-01 20 31627282 31627282 C T BPIFB6 Missense_Mutation p.R344W 0.18 tolerated(0.11) benign(0.04) TCGA-06-5416-01 20 31643263 31643263 C T BPIFB3 Missense_Mutation p.L12F 0.20 tolerated(0.22) possibly_damaging(0.86) TCGA-06-5416-01 20 31644416 31644416 C T BPIFB3 Missense_Mutation p.R65W 0.21 deleterious(0) benign(0.069) TCGA-06-5416-01 20 31651427 31651427 C A BPIFB3 Missense_Mutation p.P200T 0.14 deleterious(0) probably_damaging(0.942) TCGA-06-5416-01 20 31660594 31660594 G A BPIFB3 Missense_Mutation p.V466I 0.20 tolerated(1) benign(0) TCGA-06-5416-01 20 3180717 3180717 C T DDRGK1 Missense_Mutation p.R147Q 0.31 tolerated(0.16) possibly_damaging(0.878) TCGA-06-5416-01 20 31812976 31812976 C T BPIFA3 Silent p.D153D 0.20 TCGA-06-5416-01 20 31815468 31815468 C A BPIFA3 3'UTR 0.24 TCGA-06-5416-01 20 31876652 31876652 G A BPIFB1 Missense_Mutation p.G74D 0.43 tolerated(0.16) benign(0.395) TCGA-06-5416-01 20 32005558 32005558 G A SNTA1 Missense_Mutation p.S223L 0.22 deleterious(0.01) possibly_damaging(0.781) TCGA-06-5416-01 20 3210075 3210075 C T SLC4A11 Missense_Mutation p.R632Q 0.42 deleterious(0) possibly_damaging(0.83) TCGA-06-5416-01 20 3214883 3214883 G A SLC4A11 Silent p.I166I 0.23 TCGA-06-5416-01 20 32216233 32216233 C A CBFA2T2 Missense_Mutation p.L351I 0.21 tolerated(0.37) possibly_damaging(0.557) TCGA-06-5416-01 20 32333056 32333056 C T ZNF341 Missense_Mutation p.S97L 0.47 tolerated(0.15) benign(0.203) TCGA-06-5416-01 20 3240589 3240589 G A C20orf194 Missense_Mutation p.R987C 0.16 deleterious(0.02) benign(0.048) TCGA-06-5416-01 20 3251179 3251179 G A C20orf194 Missense_Mutation p.H894Y 0.16 tolerated(0.77) benign(0.409) TCGA-06-5416-01 20 32677549 32677549 G A EIF2S2 Missense_Mutation p.A330V 0.21 deleterious(0.01) possibly_damaging(0.714) TCGA-06-5416-01 20 32878548 32878548 G A AHCY Missense_Mutation p.A252V 0.22 deleterious_low_confidence(0.02) possibly_damaging(0.646) TCGA-06-5416-01 20 33328911 33328911 C T NCOA6 Missense_Mutation p.A1717T 0.42 benign(0.001) TCGA-06-5416-01 20 33330223 33330223 A C NCOA6 Silent p.T1279T 0.23 TCGA-06-5416-01 20 33330359 33330359 G A NCOA6 Missense_Mutation p.P1234L 0.45 probably_damaging(0.999) TCGA-06-5416-01 20 334069 334069 C A NRSN2 Missense_Mutation p.F135L 0.45 tolerated(1) benign(0) TCGA-06-5416-01 20 33470747 33470747 G A ACSS2 Missense_Mutation p.R110Q 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 20 33578200 33578200 G A MYH7B Intron 0.39 TCGA-06-5416-01 20 33578541 33578541 G T MYH7B Nonsense_Mutation p.E702* 0.19 TCGA-06-5416-01 20 33587058 33587058 C T MYH7B Missense_Mutation p.R1506W 0.38 probably_damaging(0.967) TCGA-06-5416-01 20 33589144 33589144 G A MYH7B Missense_Mutation p.A1900T 0.31 benign(0.003) TCGA-06-5416-01 20 33711741 33711741 G A EDEM2 Missense_Mutation p.P356S 0.47 tolerated(0.24) benign(0.026) TCGA-06-5416-01 20 33759967 33759967 A G PROCR Missense_Mutation p.T4A 0.17 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 20 33764528 33764528 C T PROCR Missense_Mutation p.S210L 0.39 tolerated(0.16) benign(0.095) TCGA-06-5416-01 20 33862319 33862319 C T MMP24 Silent p.I615I 0.50 TCGA-06-5416-01 20 33874214 33874214 G A FAM83C 3'UTR 0.43 TCGA-06-5416-01 20 33874601 33874601 G A FAM83C Missense_Mutation p.R661C 0.47 tolerated_low_confidence(0.1) benign(0.002) TCGA-06-5416-01 20 33874882 33874882 G A FAM83C Missense_Mutation p.A567V 0.52 tolerated_low_confidence(0.18) benign(0.003) TCGA-06-5416-01 20 33894475 33894475 C T UQCC1 Silent p.R253R 0.18 TCGA-06-5416-01 20 34022444 34022444 C A GDF5 Missense_Mutation p.G257C 0.26 deleterious(0.03) benign(0.129) TCGA-06-5416-01 20 34025690 34025690 G T GDF5 Missense_Mutation p.L7I 0.10 tolerated_low_confidence(0.24) possibly_damaging(0.636) TCGA-06-5416-01 20 34054861 34054861 G A CEP250 Missense_Mutation p.R188Q 0.19 probably_damaging(0.999) TCGA-06-5416-01 20 34057722 34057722 G A CEP250 Missense_Mutation p.E287K 0.22 possibly_damaging(0.85) TCGA-06-5416-01 20 34092084 34092084 G A CEP250 Missense_Mutation p.A1963T 0.32 possibly_damaging(0.782) TCGA-06-5416-01 20 34145378 34145378 A G ERGIC3 3'UTR 0.42 TCGA-06-5416-01 20 34208657 34208657 G A SPAG4 Missense_Mutation p.D377N 0.43 tolerated(0.5) benign(0.176) TCGA-06-5416-01 20 34208695 34208695 G T SPAG4 Missense_Mutation p.Q389H 0.18 deleterious(0.01) probably_damaging(0.932) TCGA-06-5416-01 20 34208880 34208880 G A SPAG4 Missense_Mutation p.R417Q 0.47 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 34208901 34208901 G A SPAG4 Missense_Mutation p.R424Q 0.46 tolerated(0.27) benign(0.145) TCGA-06-5416-01 20 34241613 34241613 G T RBM12 Silent p.V544V 0.20 TCGA-06-5416-01 20 34242715 34242715 C T RBM12 Missense_Mutation p.S177N 0.23 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 20 34243110 34243110 G A RBM12 Silent p.I45I 0.38 TCGA-06-5416-01 20 34304669 34304669 A C RBM39 Missense_Mutation p.F295C 0.47 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 20 34319899 34319899 C T RBM39 Missense_Mutation p.R87Q 0.20 tolerated(0.23) benign(0.238) TCGA-06-5416-01 20 34451189 34451189 C T PHF20 Silent p.S225S 0.46 TCGA-06-5416-01 20 34535496 34535496 C T PHF20 Silent p.L996L 0.49 TCGA-06-5416-01 20 34572590 34572590 C T CNBD2 Silent p.I202I 0.19 TCGA-06-5416-01 20 34761709 34761709 G A EPB41L1 Missense_Mutation p.E4K 0.20 deleterious(0.03) possibly_damaging(0.633) TCGA-06-5416-01 20 34778678 34778678 C A EPB41L1 Missense_Mutation p.S420Y 0.38 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 20 34827766 34827766 C A AAR2 5'UTR 0.48 TCGA-06-5416-01 20 34832800 34832800 C A AAR2 Missense_Mutation p.F313L 0.23 tolerated(0.06) probably_damaging(1) TCGA-06-5416-01 20 35060665 35060665 C T DLGAP4 Missense_Mutation p.A182V 0.20 deleterious(0.01) possibly_damaging(0.828) TCGA-06-5416-01 20 35269769 35269769 C A SLA2 5'UTR 0.40 TCGA-06-5416-01 20 35293468 35293468 G A NDRG3 Missense_Mutation p.S264L 0.21 deleterious(0.02) benign(0.273) TCGA-06-5416-01 20 35526237 35526237 G T SAMHD1 Missense_Mutation p.F578L 0.24 tolerated(0.12) benign(0.008) TCGA-06-5416-01 20 3559393 3559393 C T ATRN Nonsense_Mutation p.R840* 0.47 TCGA-06-5416-01 20 35646738 35646738 C A RBL1 Missense_Mutation p.R889I 0.14 deleterious(0.03) benign(0.07) TCGA-06-5416-01 20 35690639 35690639 G T RBL1 Missense_Mutation p.L311I 0.16 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 20 35731210 35731210 C T MROH8 Silent p.E1030E 0.05 TCGA-06-5416-01 20 3575178 3575178 C A ATRN Nonsense_Mutation p.C1125* 0.49 TCGA-06-5416-01 20 36028620 36028620 G A SRC Missense_Mutation p.R321K 0.39 tolerated(0.09) benign(0.002) TCGA-06-5416-01 20 36639941 36639941 G T TTI1 Missense_Mutation p.L760M 0.34 deleterious(0.02) probably_damaging(0.981) TCGA-06-5416-01 20 36640625 36640625 C A TTI1 Missense_Mutation p.G532W 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 36766754 36766754 G A TGM2 Missense_Mutation p.A459V 0.25 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 20 36770478 36770478 C A TGM2 Missense_Mutation p.S328I 0.16 tolerated(0.06) benign(0.375) TCGA-06-5416-01 20 36775229 36775229 C A TGM2 Missense_Mutation p.S250I 0.32 deleterious(0.02) possibly_damaging(0.466) TCGA-06-5416-01 20 36841691 36841691 C T KIAA1755 Missense_Mutation p.R1119K 0.21 deleterious_low_confidence(0.02) possibly_damaging(0.524) TCGA-06-5416-01 20 36841751 36841751 C T KIAA1755 Missense_Mutation p.G1099D 0.23 deleterious(0.01) probably_damaging(0.965) TCGA-06-5416-01 20 36870103 36870103 G A KIAA1755 Missense_Mutation p.L144F 0.43 deleterious(0) possibly_damaging(0.891) TCGA-06-5416-01 20 368836 368836 C T TRIB3 Missense_Mutation p.A61V 0.18 tolerated(0.23) benign(0.01) TCGA-06-5416-01 20 36965634 36965634 G A BPI 3'UTR 0.26 TCGA-06-5416-01 20 37121758 37121758 G T RALGAPB Missense_Mutation p.Q124H 0.21 tolerated(1) benign(0.009) TCGA-06-5416-01 20 3729962 3729962 G A HSPA12B Missense_Mutation p.A312T 0.16 tolerated(0.54) benign(0.005) TCGA-06-5416-01 20 37356191 37356191 G A SLC32A1 Missense_Mutation p.G163S 0.38 tolerated(0.07) possibly_damaging(0.811) TCGA-06-5416-01 20 3736114 3736114 A G C20orf27 Splice_Site p.X126_splice 0.12 TCGA-06-5416-01 20 37378692 37378692 T C ACTR5 Missense_Mutation p.C139R 0.22 deleterious(0.02) probably_damaging(0.932) TCGA-06-5416-01 20 37394930 37394930 G T ACTR5 Missense_Mutation p.R448I 0.67 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 20 3758919 3758919 C A SPEF1 Missense_Mutation p.K217N 0.49 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 37634852 37634852 G A DHX35 Missense_Mutation p.D359N 0.47 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 37653877 37653877 A C DHX35 Missense_Mutation p.N559T 0.46 deleterious(0.05) benign(0.027) TCGA-06-5416-01 20 3784086 3784086 G T CDC25B Missense_Mutation p.E464D 0.24 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 20 3804765 3804765 C T AP5S1 Silent p.L142L 0.38 TCGA-06-5416-01 20 3804901 3804901 T C AP5S1 Missense_Mutation p.V187A 0.19 tolerated(0.43) benign(0.359) TCGA-06-5416-01 20 3835312 3835312 G A MAVS Missense_Mutation p.R14H 0.36 tolerated(1) benign(0) TCGA-06-5416-01 20 3904028 3904028 C A PANK2 3'UTR 0.29 TCGA-06-5416-01 20 39713132 39713132 G T TOP1 Missense_Mutation p.D180Y 0.28 deleterious(0.03) unknown(0) TCGA-06-5416-01 20 39798786 39798786 C T PLCG1 Silent p.F895F 0.18 TCGA-06-5416-01 20 39800898 39800898 C T PLCG1 Silent p.V958V 0.19 TCGA-06-5416-01 20 39831075 39831075 C T ZHX3 Missense_Mutation p.E828K 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-06-5416-01 20 39831434 39831434 G T ZHX3 Missense_Mutation p.S708Y 0.25 deleterious(0) possibly_damaging(0.806) TCGA-06-5416-01 20 39992437 39992437 G A EMILIN3 Missense_Mutation p.R119C 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 40050654 40050654 G A CHD6 Missense_Mutation p.R1541C 0.07 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 20 40052182 40052182 A G CHD6 Missense_Mutation p.F1502S 0.42 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 20 40120453 40120453 G A CHD6 Missense_Mutation p.P441S 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 40143532 40143532 G A CHD6 Missense_Mutation p.T205I 0.47 tolerated(0.53) benign(0.003) TCGA-06-5416-01 20 40710567 40710567 G A PTPRT Silent p.I1409I 0.38 TCGA-06-5416-01 20 40730859 40730859 G A PTPRT Nonsense_Mutation p.R1207* 0.43 TCGA-06-5416-01 20 407982 407982 G A RBCK1 Missense_Mutation p.R352Q 0.08 deleterious(0.03) benign(0.225) TCGA-06-5416-01 20 40827911 40827911 G T PTPRT Missense_Mutation p.F820L 0.19 tolerated(1) benign(0.002) TCGA-06-5416-01 20 41100937 41100937 G A PTPRT Silent p.S473S 0.17 TCGA-06-5416-01 20 4162772 4162772 G A SMOX Missense_Mutation p.E216K 0.47 tolerated(0.32) possibly_damaging(0.461) TCGA-06-5416-01 20 419135 419135 G T TBC1D20 3'UTR 0.20 TCGA-06-5416-01 20 42089406 42089406 G T SRSF6 Missense_Mutation p.K246N 0.08 tolerated(0.1) unknown(0) TCGA-06-5416-01 20 42089414 42089414 C T SRSF6 Missense_Mutation p.S249F 0.28 deleterious(0) unknown(0) TCGA-06-5416-01 20 42162941 42162941 C T L3MBTL1 Silent p.F517F 0.28 TCGA-06-5416-01 20 42165064 42165064 G A L3MBTL1 Silent p.P691P 0.45 TCGA-06-5416-01 20 42168942 42168942 C T L3MBTL1 Silent p.I753I 0.20 TCGA-06-5416-01 20 42196639 42196639 G T SGK2 Missense_Mutation p.E136D 0.20 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 20 42198070 42198070 C T SGK2 Missense_Mutation p.R152W 0.37 deleterious(0) possibly_damaging(0.567) TCGA-06-5416-01 20 422300 422300 C A TBC1D20 Missense_Mutation p.K186N 0.45 tolerated(0.14) benign(0.076) TCGA-06-5416-01 20 42252683 42252683 C T IFT52 Silent p.I307I 0.22 TCGA-06-5416-01 20 42354987 42354987 G A GTSF1L Silent p.V116V 0.44 TCGA-06-5416-01 20 42694409 42694409 C A TOX2 Missense_Mutation p.L340I 0.45 tolerated(0.51) probably_damaging(0.984) TCGA-06-5416-01 20 43034848 43034848 G A HNF4A Missense_Mutation p.R89Q 0.47 deleterious(0.01) benign(0.026) TCGA-06-5416-01 20 43042368 43042368 A G HNF4A Silent p.R140R 0.11 TCGA-06-5416-01 20 43047087 43047087 C A HNF4A Missense_Mutation p.A224D 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 43108823 43108823 C T TTPAL Missense_Mutation p.R62C 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 20 43142575 43142575 C T SERINC3 Missense_Mutation p.S49N 0.25 deleterious(0) benign(0.207) TCGA-06-5416-01 20 43374771 43374771 G A KCNK15 Missense_Mutation p.A74T 0.33 deleterious(0.02) benign(0.025) TCGA-06-5416-01 20 43530271 43530271 G T YWHAB Nonsense_Mutation p.E33* 0.35 TCGA-06-5416-01 20 43541388 43541388 G A PABPC1L Missense_Mutation p.R94H 0.18 deleterious(0) probably_damaging(0.949) TCGA-06-5416-01 20 43547673 43547673 C A PABPC1L Silent p.L210L 0.17 TCGA-06-5416-01 20 43559110 43559110 G T PABPC1L Nonsense_Mutation p.E328* 0.19 TCGA-06-5416-01 20 43610520 43610520 G T STK4 Missense_Mutation p.W99L 0.18 deleterious(0.04) possibly_damaging(0.467) TCGA-06-5416-01 20 43723816 43723816 C T KCNS1 Missense_Mutation p.D426N 0.48 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 20 43726866 43726866 C T KCNS1 Missense_Mutation p.E183K 0.17 deleterious(0.02) probably_damaging(0.997) TCGA-06-5416-01 20 43752807 43752807 T G WFDC12 Missense_Mutation p.K60T 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-06-5416-01 20 43804560 43804560 C T PI3 Silent p.P46P 0.24 TCGA-06-5416-01 20 43836257 43836257 C T SEMG1 Missense_Mutation p.L107F 0.47 tolerated(0.33) probably_damaging(0.998) TCGA-06-5416-01 20 43850884 43850884 A G SEMG2 Missense_Mutation p.N204S 0.21 deleterious(0.03) probably_damaging(0.994) TCGA-06-5416-01 20 43851027 43851027 G T SEMG2 Missense_Mutation p.D252Y 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 20 43851250 43851250 C T SEMG2 Missense_Mutation p.S326F 0.18 deleterious(0.04) probably_damaging(0.996) TCGA-06-5416-01 20 43851287 43851287 G A SEMG2 Silent p.E338E 0.18 TCGA-06-5416-01 20 43943187 43943187 G A RBPJL Silent p.E334E 0.34 TCGA-06-5416-01 20 43945534 43945534 G A RBPJL Missense_Mutation p.A497T 0.47 tolerated(0.33) benign(0.003) TCGA-06-5416-01 20 43994308 43994308 T A SYS1 Missense_Mutation p.I71N 0.45 deleterious(0) possibly_damaging(0.608) TCGA-06-5416-01 20 44004138 44004138 G A TP53TG5 Silent p.I103I 0.24 TCGA-06-5416-01 20 44045173 44045173 C T PIGT Silent p.L68L 0.25 TCGA-06-5416-01 20 44333566 44333566 T C WFDC10B Missense_Mutation p.Y22C 0.42 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 20 44351048 44351048 C A SPINT4 Silent p.I14I 0.16 TCGA-06-5416-01 20 44416536 44416536 C A WFDC3 Missense_Mutation p.K99N 0.52 tolerated(0.07) benign(0.412) TCGA-06-5416-01 20 44417693 44417693 C A WFDC3 Nonsense_Mutation p.E30* 0.26 TCGA-06-5416-01 20 44477249 44477249 G A ACOT8 Missense_Mutation p.R110C 0.24 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 20 44511193 44511193 C A ZSWIM1 5'UTR 0.44 TCGA-06-5416-01 20 44511630 44511630 G T ZSWIM1 Missense_Mutation p.K133N 0.23 deleterious(0.01) probably_damaging(0.991) TCGA-06-5416-01 20 44515600 44515600 C T SPATA25 Silent p.E80E 0.23 TCGA-06-5416-01 20 44517418 44517418 C A NEURL2 Missense_Mutation p.K279N 0.37 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 20 44525627 44525627 G A CTSA Missense_Mutation p.R389H 0.19 tolerated(0.14) benign(0.003) TCGA-06-5416-01 20 44530909 44530909 C T PLTP Missense_Mutation p.R391H 0.20 tolerated(0.06) benign(0.12) TCGA-06-5416-01 20 44576312 44576312 C A PCIF1 Missense_Mutation p.S678Y 0.46 tolerated(0.1) benign(0.121) TCGA-06-5416-01 20 44577452 44577452 G T ZNF335 3'UTR 0.54 TCGA-06-5416-01 20 44578448 44578448 G A ZNF335 Silent p.S1220S 0.17 TCGA-06-5416-01 20 44596551 44596551 C T ZNF335 Silent p.G212G 0.22 TCGA-06-5416-01 20 44598308 44598308 G A ZNF335 Missense_Mutation p.S75L 0.47 deleterious_low_confidence(0) benign(0.003) TCGA-06-5416-01 20 44642395 44642395 C T MMP9 Silent p.V570V 0.21 TCGA-06-5416-01 20 44684877 44684877 C T SLC12A5 Missense_Mutation p.T982M 0.40 tolerated(0.14) benign(0.064) TCGA-06-5416-01 20 44685019 44685019 G A SLC12A5 Missense_Mutation p.D999N 0.40 deleterious(0.03) benign(0.117) TCGA-06-5416-01 20 44691222 44691222 C A NCOA5 Missense_Mutation p.S486I 0.15 deleterious(0.05) benign(0.311) TCGA-06-5416-01 20 44699147 44699147 C A NCOA5 Missense_Mutation p.D23Y 0.40 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 20 44841735 44841735 C A CDH22 Missense_Mutation p.D311Y 0.55 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 20 44980843 44980843 C A SLC35C2 Missense_Mutation p.E228D 0.39 tolerated(0.24) benign(0.021) TCGA-06-5416-01 20 45014877 45014877 G A ELMO2 Missense_Mutation p.S188L 0.38 deleterious(0.02) benign(0.196) TCGA-06-5416-01 20 45130155 45130155 G A ZNF334 Missense_Mutation p.S608F 0.19 tolerated(0.2) possibly_damaging(0.888) TCGA-06-5416-01 20 45221110 45221110 G A SLC13A3 Missense_Mutation p.L285F 0.34 tolerated(0.05) probably_damaging(0.996) TCGA-06-5416-01 20 45355616 45355616 G A SLC2A10 Missense_Mutation p.D468N 0.21 tolerated(0.29) benign(0.099) TCGA-06-5416-01 20 45858507 45858507 G T ZMYND8 Missense_Mutation p.L922I 0.15 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 20 45878140 45878140 C T ZMYND8 Silent p.S555S 0.34 TCGA-06-5416-01 20 46262366 46262366 G T NCOA3 Missense_Mutation p.R317L 0.42 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 20 46262906 46262906 G A NCOA3 Missense_Mutation p.R360Q 0.45 deleterious(0.01) possibly_damaging(0.63) TCGA-06-5416-01 20 46264912 46264912 T C NCOA3 Silent p.S594S 0.45 TCGA-06-5416-01 20 46287114 46287114 C T SULF2 Missense_Mutation p.E869K 0.18 tolerated_low_confidence(0.39) benign(0.027) TCGA-06-5416-01 20 4705189 4705189 T G PRND Intron 0.30 TCGA-06-5416-01 20 47262417 47262417 C T PREX1 Missense_Mutation p.D1162N 0.23 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 20 47266552 47266552 C T PREX1 Missense_Mutation p.G1004S 0.17 tolerated(0.18) possibly_damaging(0.754) TCGA-06-5416-01 20 472904 472904 G T CSNK2A1 Missense_Mutation p.D205E 0.12 tolerated(0.06) probably_damaging(0.928) TCGA-06-5416-01 20 47309219 47309219 C A PREX1 Missense_Mutation p.D343Y 0.34 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 47444213 47444213 C A PREX1 Missense_Mutation p.R62M 0.20 deleterious(0) possibly_damaging(0.807) TCGA-06-5416-01 20 47605878 47605878 G A ARFGEF2 Missense_Mutation p.A864T 0.27 tolerated(0.12) benign(0.115) TCGA-06-5416-01 20 47712923 47712923 C T CSE1L Missense_Mutation p.A955V 0.18 tolerated(0.46) benign(0.023) TCGA-06-5416-01 20 478424 478424 G A CSNK2A1 Nonsense_Mutation p.Q123* 0.47 TCGA-06-5416-01 20 47877072 47877072 T C ZNFX1 Missense_Mutation p.M782V 0.28 tolerated(0.09) benign(0.003) TCGA-06-5416-01 20 47886510 47886510 T C ZNFX1 Silent p.E613E 0.18 TCGA-06-5416-01 20 47896896 47896896 C T ZNFX1 5'Flank 0.19 TCGA-06-5416-01 20 479937 479937 C T CSNK2A1 Missense_Mutation p.A110T 0.41 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 20 48098529 48098529 G A KCNB1 Silent p.F163F 0.49 TCGA-06-5416-01 20 48129778 48129778 G A PTGIS Missense_Mutation p.L349F 0.31 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 20 48164524 48164524 G A PTGIS Silent p.L77L 0.49 TCGA-06-5416-01 20 4837663 4837663 G A SLC23A2 Silent p.S636S 0.34 TCGA-06-5416-01 20 49197956 49197956 G A PTPN1 Missense_Mutation p.V415M 0.13 tolerated(0.86) benign(0.011) TCGA-06-5416-01 20 49219027 49219027 T C FAM65C Missense_Mutation p.D410G 0.47 tolerated(0.07) probably_damaging(0.92) TCGA-06-5416-01 20 49227437 49227437 G A FAM65C Missense_Mutation p.R123C 0.36 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 20 49366318 49366318 G A PARD6B Missense_Mutation p.D138N 0.21 tolerated(0.05) possibly_damaging(0.721) TCGA-06-5416-01 20 49366572 49366572 A C PARD6B Missense_Mutation p.E222D 0.21 tolerated(0.28) benign(0.189) TCGA-06-5416-01 20 49620948 49620948 G T KCNG1 Silent p.L390L 0.41 TCGA-06-5416-01 20 50139736 50139736 G A NFATC2 Silent p.A348A 0.40 TCGA-06-5416-01 20 50140441 50140441 G A NFATC2 Silent p.I113I 0.47 TCGA-06-5416-01 20 50217720 50217720 G T ATP9A 3'UTR 0.44 TCGA-06-5416-01 20 50287766 50287766 G A ATP9A Silent p.I356I 0.52 TCGA-06-5416-01 20 50292712 50292712 C A ATP9A Nonsense_Mutation p.E279* 0.42 TCGA-06-5416-01 20 50307342 50307342 C T ATP9A Missense_Mutation p.R220Q 0.04 tolerated(0.29) benign(0.041) TCGA-06-5416-01 20 50405503 50405503 G A SALL4 Missense_Mutation p.S880L 0.48 deleterious(0.02) possibly_damaging(0.821) TCGA-06-5416-01 20 50406958 50406958 G A SALL4 Silent p.I688I 0.49 TCGA-06-5416-01 20 50419006 50419006 C T SALL4 5'UTR 0.27 TCGA-06-5416-01 20 50701502 50701502 C T ZFP64 Missense_Mutation p.R511H 0.12 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 20 50769284 50769284 G A ZFP64 Missense_Mutation p.P483S 0.48 tolerated(0.13) probably_damaging(0.997) TCGA-06-5416-01 20 5098276 5098276 G T PCNA Missense_Mutation p.S141Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 20 5154267 5154267 G A CDS2 Silent p.P52P 0.19 TCGA-06-5416-01 20 5157155 5157155 G T CDS2 Intron 0.31 TCGA-06-5416-01 20 52192391 52192391 C A ZNF217 Missense_Mutation p.R971M 0.53 tolerated(0.22) possibly_damaging(0.789) TCGA-06-5416-01 20 52192665 52192665 C T ZNF217 Missense_Mutation p.G880S 0.19 tolerated(0.3) benign(0.156) TCGA-06-5416-01 20 52193161 52193161 A C ZNF217 Missense_Mutation p.F714L 0.22 tolerated(0.07) benign(0.085) TCGA-06-5416-01 20 52199134 52199134 C T ZNF217 Missense_Mutation p.E78K 0.41 deleterious(0.01) probably_damaging(0.967) TCGA-06-5416-01 20 52561383 52561383 G A BCAS1 3'UTR 0.22 TCGA-06-5416-01 20 52781034 52781034 G T CYP24A1 Silent p.V267V 0.21 TCGA-06-5416-01 20 5283331 5283331 G A PROKR2 Silent p.A170A 0.17 TCGA-06-5416-01 20 53092512 53092512 G A DOK5 Silent p.V9V 0.31 TCGA-06-5416-01 20 53205106 53205106 G A DOK5 Missense_Mutation p.D87N 0.46 tolerated(0.06) possibly_damaging(0.473) TCGA-06-5416-01 20 53205120 53205120 T A DOK5 Silent p.T91T 0.42 TCGA-06-5416-01 20 54578973 54578973 C A CBLN4 Missense_Mutation p.E85D 0.23 tolerated(0.13) benign(0.162) TCGA-06-5416-01 20 54824128 54824128 C T MC3R Missense_Mutation p.L77F 0.39 deleterious(0.01) benign(0.309) TCGA-06-5416-01 20 54824319 54824319 C T MC3R Silent p.V140V 0.20 TCGA-06-5416-01 20 54824328 54824328 C T MC3R Silent p.Y143Y 0.39 TCGA-06-5416-01 20 54824806 54824806 A T MC3R Missense_Mutation p.S303C 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 54941302 54941302 C T FAM210B Nonsense_Mutation p.R180* 0.43 TCGA-06-5416-01 20 55027023 55027023 C T CASS4 Missense_Mutation p.A264V 0.46 tolerated(1) benign(0.001) TCGA-06-5416-01 20 55108387 55108387 C A FAM209B 5'UTR 0.44 TCGA-06-5416-01 20 5550861 5550861 C T GPCPD1 Missense_Mutation p.V361I 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 20 5564948 5564948 C T GPCPD1 Missense_Mutation p.D110N 0.20 tolerated(0.36) probably_damaging(0.943) TCGA-06-5416-01 20 55906981 55906981 G T SPO11 Missense_Mutation p.R75I 0.22 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 20 55909091 55909091 C T SPO11 Silent p.V150V 0.37 TCGA-06-5416-01 20 55943848 55943848 G T RAE1 Nonsense_Mutation p.E208* 0.19 TCGA-06-5416-01 20 55948597 55948597 G A RAE1 Missense_Mutation p.E237K 0.16 deleterious(0) probably_damaging(0.927) TCGA-06-5416-01 20 55948616 55948616 A G RAE1 Missense_Mutation p.H243R 0.19 deleterious(0.01) benign(0.118) TCGA-06-5416-01 20 56078506 56078506 G A CTCFL Missense_Mutation p.A609V 0.46 tolerated(0.31) benign(0.001) TCGA-06-5416-01 20 56089762 56089762 G A CTCFL Missense_Mutation p.R406C 0.20 deleterious(0.01) possibly_damaging(0.693) TCGA-06-5416-01 20 56137171 56137171 G A PCK1 Missense_Mutation p.S90N 0.18 deleterious(0.05) probably_damaging(0.949) TCGA-06-5416-01 20 56138131 56138131 G A PCK1 Missense_Mutation p.A220T 0.16 tolerated(0.66) benign(0.042) TCGA-06-5416-01 20 56140113 56140113 G A PCK1 Missense_Mutation p.E446K 0.18 deleterious(0.01) probably_damaging(0.988) TCGA-06-5416-01 20 56179540 56179540 G A ZBP1 3'UTR 0.19 TCGA-06-5416-01 20 56179823 56179823 G A ZBP1 Missense_Mutation p.R366C 0.35 deleterious(0.01) benign(0.001) TCGA-06-5416-01 20 56227397 56227397 G A PMEPA1 Silent p.F192F 0.20 TCGA-06-5416-01 20 56285522 56285522 C A PMEPA1 5'Flank 0.23 TCGA-06-5416-01 20 56728648 56728648 G A C20orf85 Silent p.Q39Q 0.42 TCGA-06-5416-01 20 56730613 56730613 G T C20orf85 Missense_Mutation p.E80D 0.14 tolerated(0.11) benign(0.033) TCGA-06-5416-01 20 57009692 57009692 G T VAPB Missense_Mutation p.E82D 0.28 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 20 57019148 57019148 C T VAPB Missense_Mutation p.R197W 0.14 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 57035823 57035823 C T APCDD1L 3'UTR 0.24 TCGA-06-5416-01 20 57036207 57036207 G A APCDD1L Missense_Mutation p.A382V 0.21 tolerated(0.18) benign(0.105) TCGA-06-5416-01 20 57428923 57428923 G A GNAS Silent p.E201E 0.17 TCGA-06-5416-01 20 57568761 57568761 G A NELFCD Missense_Mutation p.R526Q 0.21 tolerated(0.09) benign(0.272) TCGA-06-5416-01 20 57598602 57598602 G T TUBB1 Missense_Mutation p.S75I 0.19 deleterious_low_confidence(0) benign(0.434) TCGA-06-5416-01 20 57767802 57767802 C T ZNF831 Silent p.G576G 0.14 TCGA-06-5416-01 20 57768443 57768443 G A ZNF831 Missense_Mutation p.R790Q 0.28 tolerated(0.67) benign(0.001) TCGA-06-5416-01 20 57829377 57829377 G T ZNF831 Missense_Mutation p.R1538I 0.25 tolerated(0.41) benign(0.001) TCGA-06-5416-01 20 57829663 57829663 G A ZNF831 Silent p.E1633E 0.50 TCGA-06-5416-01 20 57829766 57829766 G A ZNF831 Missense_Mutation p.D1668N 0.29 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 20 57896183 57896183 C T EDN3 Silent p.C159C 0.25 TCGA-06-5416-01 20 58422243 58422243 A G PHACTR3 3'UTR 0.18 TCGA-06-5416-01 20 58443566 58443566 G A SYCP2 Missense_Mutation p.S1297F 0.21 tolerated(0.05) benign(0.004) TCGA-06-5416-01 20 58494583 58494583 G A SYCP2 Silent p.L123L 0.34 TCGA-06-5416-01 20 58564083 58564083 T C CDH26 Missense_Mutation p.V383A 0.45 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 20 58567543 58567543 T G CDH26 Missense_Mutation p.F465C 0.22 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 20 58569512 58569512 C T CDH26 Missense_Mutation p.A545V 0.40 tolerated(1) benign(0.024) TCGA-06-5416-01 20 58883615 58883615 G A MIR646 RNA 0.17 TCGA-06-5416-01 20 5904009 5904009 G A CHGB Missense_Mutation p.E407K 0.15 deleterious(0.03) probably_damaging(0.968) TCGA-06-5416-01 20 5905674 5905674 G T CHGB Missense_Mutation p.E671D 0.22 deleterious(0.01) possibly_damaging(0.908) TCGA-06-5416-01 20 5939322 5939322 G T MCM8 Nonsense_Mutation p.E247* 0.19 TCGA-06-5416-01 20 5948132 5948132 G A MCM8 Missense_Mutation p.R309Q 0.21 deleterious(0) possibly_damaging(0.803) TCGA-06-5416-01 20 5990444 5990444 G T CRLS1 Silent p.P110P 0.17 TCGA-06-5416-01 20 6022776 6022776 G A LRRN4 Missense_Mutation p.A372V 0.19 tolerated(0.28) benign(0.046) TCGA-06-5416-01 20 60348060 60348060 C T CDH4 Missense_Mutation p.P133L 0.47 tolerated(0.32) benign(0) TCGA-06-5416-01 20 60578896 60578896 C T TAF4 Silent p.R754R 0.23 TCGA-06-5416-01 20 60584231 60584231 C A TAF4 Splice_Site p.X588_splice 0.16 TCGA-06-5416-01 20 60711907 60711907 T C PSMA7 3'UTR 0.10 TCGA-06-5416-01 20 60737822 60737822 T C SS18L1 Missense_Mutation p.S131P 0.19 tolerated_low_confidence(0.58) benign(0.02) TCGA-06-5416-01 20 60774190 60774190 G A MTG2 Missense_Mutation p.A235T 0.29 deleterious(0.01) probably_damaging(0.962) TCGA-06-5416-01 20 60791718 60791718 G A HRH3 Missense_Mutation p.R228C 0.51 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 20 60903054 60903054 G A LAMA5 Silent p.N1555N 0.17 TCGA-06-5416-01 20 60904100 60904100 G T LAMA5 Nonsense_Mutation p.S1416* 0.26 TCGA-06-5416-01 20 60904275 60904275 C T LAMA5 Missense_Mutation p.S1385N 0.19 benign(0.034) TCGA-06-5416-01 20 6090960 6090960 G A FERMT1 Missense_Mutation p.A244V 0.25 deleterious(0.03) possibly_damaging(0.708) TCGA-06-5416-01 20 60910123 60910123 C A LAMA5 Missense_Mutation p.K812N 0.26 probably_damaging(0.99) TCGA-06-5416-01 20 60910134 60910134 C T LAMA5 Missense_Mutation p.A809T 0.24 benign(0.274) TCGA-06-5416-01 20 60922041 60922041 C T LAMA5 Missense_Mutation p.D334N 0.21 probably_damaging(0.951) TCGA-06-5416-01 20 6093206 6093206 C T FERMT1 Silent p.K150K 0.20 TCGA-06-5416-01 20 60963477 60963477 C T RPS21 Intron 0.23 TCGA-06-5416-01 20 60994736 60994736 C T RBBP8NL 5'UTR 0.47 TCGA-06-5416-01 20 61340985 61340985 C T NTSR1 Silent p.R142R 0.42 TCGA-06-5416-01 20 61389665 61389665 C T NTSR1 Missense_Mutation p.R322W 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 61389697 61389697 G A NTSR1 Silent p.E332E 0.27 TCGA-06-5416-01 20 61463526 61463526 C T COL9A3 Silent p.G436G 0.19 TCGA-06-5416-01 20 61473283 61473283 G A TCFL5 3'UTR 0.46 TCGA-06-5416-01 20 61512853 61512853 C A DIDO1 Missense_Mutation p.Q1485H 0.24 probably_damaging(0.998) TCGA-06-5416-01 20 61835019 61835019 C A YTHDF1 Missense_Mutation p.Q91H 0.13 tolerated(0.12) possibly_damaging(0.88) TCGA-06-5416-01 20 61978096 61978096 C A CHRNA4 Missense_Mutation p.M626I 0.19 deleterious(0.01) probably_damaging(0.937) TCGA-06-5416-01 20 61982081 61982081 C T CHRNA4 Missense_Mutation p.E228K 0.44 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 20 62039877 62039877 G A KCNQ2 Silent p.I592I 0.19 TCGA-06-5416-01 20 62046449 62046449 G T KCNQ2 Missense_Mutation p.F444L 0.13 tolerated(0.41) benign(0.211) TCGA-06-5416-01 20 62122024 62122024 G A EEF1A2 Silent p.T279T 0.20 TCGA-06-5416-01 20 62173907 62173907 G A SRMS Missense_Mutation p.R225W 0.22 deleterious(0.03) probably_damaging(0.984) TCGA-06-5416-01 20 62193321 62193321 G A HELZ2 Silent p.I2182I 0.42 TCGA-06-5416-01 20 62196630 62196630 G A HELZ2 Missense_Mutation p.A1182V 0.17 tolerated(0.22) benign(0.007) TCGA-06-5416-01 20 62196800 62196800 C T HELZ2 Silent p.E1125E 0.45 TCGA-06-5416-01 20 62197322 62197322 G A HELZ2 Silent p.V951V 0.24 TCGA-06-5416-01 20 62200148 62200148 G A HELZ2 Silent p.F431F 0.21 TCGA-06-5416-01 20 62223463 62223463 G A GMEB2 Silent p.F288F 0.21 TCGA-06-5416-01 20 62273503 62273503 G A STMN3 Silent p.R147R 0.26 TCGA-06-5416-01 20 62275238 62275238 G A STMN3 Silent p.F54F 0.42 TCGA-06-5416-01 20 62275571 62275571 G A STMN3 Silent p.Y37Y 0.45 TCGA-06-5416-01 20 62319887 62319887 G A RTEL1 Missense_Mutation p.D601N 0.12 tolerated(0.32) benign(0.091) TCGA-06-5416-01 20 62321192 62321192 C T RTEL1 Silent p.Y729Y 0.18 TCGA-06-5416-01 20 62329662 62329662 G A TNFRSF6B Missense_Mutation p.D217N 0.44 deleterious(0.02) benign(0.139) TCGA-06-5416-01 20 62370082 62370082 G A LIME1 Silent p.P239P 0.46 TCGA-06-5416-01 20 62422003 62422003 G A ZBTB46 Silent p.V36V 0.17 TCGA-06-5416-01 20 62520563 62520563 C T TPD52L2 Missense_Mutation p.S189L 0.23 deleterious(0.01) benign(0.415) TCGA-06-5416-01 20 62591293 62591294 - C ZNF512B Frame_Shift_Ins p.A876Gfs*16 0.21 TCGA-06-5416-01 20 62658451 62658451 G T PRPF6 Missense_Mutation p.K715N 0.24 tolerated(0.45) benign(0.278) TCGA-06-5416-01 20 62664418 62664418 C A PRPF6 3'UTR 0.44 TCGA-06-5416-01 20 62836447 62836447 G A MYT1 Missense_Mutation p.R49Q 0.21 benign(0.01) TCGA-06-5416-01 20 62859334 62859334 G A MYT1 Intron 0.24 TCGA-06-5416-01 20 62891427 62891427 G A PCMTD2 Missense_Mutation p.D37N 0.43 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 20 644979 644979 G A SCRT2 Missense_Mutation p.P87L 0.35 tolerated(0.06) benign(0.435) TCGA-06-5416-01 20 746129 746129 G A SLC52A3 Missense_Mutation p.S97F 0.21 deleterious(0.03) possibly_damaging(0.77) TCGA-06-5416-01 20 746383 746383 G A SLC52A3 Silent p.F12F 0.22 TCGA-06-5416-01 20 7894856 7894856 C T HAO1 Missense_Mutation p.R167H 0.35 deleterious(0) probably_damaging(1) TCGA-06-5416-01 20 7963181 7963181 T C TMX4 Missense_Mutation p.N256S 0.46 tolerated(0.17) possibly_damaging(0.555) TCGA-06-5416-01 20 826338 826338 G A FAM110A 3'UTR 0.23 TCGA-06-5416-01 20 858842 858842 G A ANGPT4 Silent p.Y394Y 0.28 TCGA-06-5416-01 20 8628595 8628596 - A PLCB1 Frame_Shift_Ins p.N173Kfs*14 0.31 TCGA-06-5416-01 20 8722140 8722140 C T PLCB1 Nonsense_Mutation p.R815* 0.22 TCGA-06-5416-01 20 8737733 8737733 C T PLCB1 Missense_Mutation p.A855V 0.21 tolerated(0.36) benign(0.001) TCGA-06-5416-01 20 8741066 8741066 C T PLCB1 Missense_Mutation p.A890V 0.44 tolerated(0.17) benign(0.001) TCGA-06-5416-01 20 8745823 8745823 G A PLCB1 Silent p.Q916Q 0.35 TCGA-06-5416-01 20 8782728 8782728 C T PLCB1 Intron 0.44 TCGA-06-5416-01 20 9370546 9370546 G T PLCB4 Missense_Mutation p.K393N 0.22 deleterious(0.04) benign(0.003) TCGA-06-5416-01 20 9402046 9402046 C T PLCB4 Missense_Mutation p.R741C 0.23 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 20 9510327 9510327 G T LAMP5 Nonsense_Mutation p.E235* 0.16 TCGA-06-5416-01 21 10951300 10951301 - A TPTE Frame_Shift_Ins p.L138Sfs*19 0.11 TCGA-06-5416-01 21 10998330 10998330 C T TPTE RNA 0.11 TCGA-06-5416-01 21 11015079 11015079 C T TPTE RNA 0.35 TCGA-06-5416-01 21 14982840 14982840 G T POTED Missense_Mutation p.K97N 0.29 tolerated_low_confidence(0.07) benign(0.005) TCGA-06-5416-01 21 15352143 15352143 C T ANKRD20A11P RNA 0.24 TCGA-06-5416-01 21 15537630 15537630 G T LIPI Nonsense_Mutation p.S293* 0.19 TCGA-06-5416-01 21 15750652 15750652 G A HSPA13 Nonsense_Mutation p.R150* 0.19 TCGA-06-5416-01 21 16337693 16337693 G T NRIP1 Missense_Mutation p.L941I 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 21 16337803 16337803 C A NRIP1 Missense_Mutation p.R904I 0.40 deleterious(0.03) possibly_damaging(0.629) TCGA-06-5416-01 21 16339329 16339329 T G NRIP1 Silent p.G395G 0.19 TCGA-06-5416-01 21 17236754 17236754 T G USP25 Missense_Mutation p.S835R 0.26 deleterious(0) possibly_damaging(0.802) TCGA-06-5416-01 21 17443562 17443562 A C LINC00478 RNA 0.18 TCGA-06-5416-01 21 18966464 18966464 T C BTG3 Missense_Mutation p.M280V 0.46 tolerated(0.5) benign(0.002) TCGA-06-5416-01 21 19770613 19770613 G A TMPRSS15 Missense_Mutation p.A60V 0.27 deleterious(0) benign(0.123) TCGA-06-5416-01 21 22656514 22656514 C T NCAM2 Missense_Mutation p.A44V 0.18 tolerated(1) benign(0.05) TCGA-06-5416-01 21 27071055 27071055 G A JAM2 Missense_Mutation p.R154Q 0.14 deleterious(0.03) possibly_damaging(0.674) TCGA-06-5416-01 21 27136614 27136614 C T GABPA Missense_Mutation p.A299V 0.21 tolerated(0.31) benign(0.057) TCGA-06-5416-01 21 27264107 27264107 G A APP Missense_Mutation p.A713V 0.44 deleterious(0.02) probably_damaging(0.993) TCGA-06-5416-01 21 27423361 27423361 G A APP Missense_Mutation p.S206L 0.13 deleterious(0.04) benign(0.194) TCGA-06-5416-01 21 27840896 27840896 G A CYYR1 Missense_Mutation p.P130L 0.26 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 21 28210820 28210820 A C ADAMTS1 Missense_Mutation p.C714W 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 21 28214888 28214888 G T ADAMTS1 Missense_Mutation p.L283I 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 21 28296582 28296582 A G ADAMTS5 Silent p.S861S 0.41 TCGA-06-5416-01 21 30307586 30307586 C A LTN1 Missense_Mutation p.D1620Y 0.45 deleterious(0) benign(0.421) TCGA-06-5416-01 21 30308879 30308879 G T LTN1 Missense_Mutation p.F1587L 0.23 tolerated(0.09) benign(0.03) TCGA-06-5416-01 21 30319804 30319804 C A LTN1 Missense_Mutation p.D1203Y 0.22 deleterious(0) possibly_damaging(0.771) TCGA-06-5416-01 21 30400269 30400269 C T USP16 Missense_Mutation p.P12L 0.21 tolerated(0.21) benign(0.002) TCGA-06-5416-01 21 30419570 30419570 C T USP16 Nonsense_Mutation p.R647* 0.47 TCGA-06-5416-01 21 30693684 30693684 G A BACH1 Missense_Mutation p.R28Q 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 21 30701956 30701956 G A BACH1 Missense_Mutation p.R573H 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 21 30714719 30714719 G A BACH1 Splice_Site p.X593_splice 0.48 TCGA-06-5416-01 21 30971225 30971225 G T GRIK1 Silent p.T377T 0.44 TCGA-06-5416-01 21 31066295 31066295 C T GRIK1 Missense_Mutation p.R69Q 0.41 deleterious(0.02) benign(0.339) TCGA-06-5416-01 21 31588124 31588124 G A CLDN8 Silent p.I40I 0.46 TCGA-06-5416-01 21 31768946 31768946 T G KRTAP13-1 3'UTR 0.40 TCGA-06-5416-01 21 31798150 31798150 G T KRTAP13-3 Silent p.G27G 0.09 TCGA-06-5416-01 21 32253535 32253535 C T KRTAP11-1 Silent p.P103P 0.41 TCGA-06-5416-01 21 32492607 32492607 C A TIAM1 3'UTR 0.38 TCGA-06-5416-01 21 32624140 32624140 C A TIAM1 Missense_Mutation p.K443N 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 21 32638635 32638635 C T TIAM1 Silent p.A218A 0.18 TCGA-06-5416-01 21 32639181 32639181 C T TIAM1 Silent p.T36T 0.21 TCGA-06-5416-01 21 33067135 33067135 C T SCAF4 Silent p.P409P 0.38 TCGA-06-5416-01 21 33076188 33076188 G A SCAF4 Nonsense_Mutation p.R71* 0.50 TCGA-06-5416-01 21 34067412 34067412 T G SYNJ1 Silent p.G259G 0.20 TCGA-06-5416-01 21 34823071 34823071 A C TMEM50B 3'UTR 0.50 TCGA-06-5416-01 21 34837668 34837668 G A TMEM50B Silent p.S87S 0.28 TCGA-06-5416-01 21 34860860 34860860 G A DNAJC28 Missense_Mutation p.L281F 0.49 tolerated(0.08) probably_damaging(1) TCGA-06-5416-01 21 34861300 34861300 C T DNAJC28 Missense_Mutation p.R134Q 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 21 34861463 34861463 G A DNAJC28 Missense_Mutation p.P80S 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 21 34861615 34861615 A G DNAJC28 Missense_Mutation p.L29P 0.21 deleterious(0.03) benign(0.016) TCGA-06-5416-01 21 34876556 34876556 C T GART Missense_Mutation p.A970T 0.39 tolerated(0.12) benign(0.005) TCGA-06-5416-01 21 34877982 34877982 G A GART Missense_Mutation p.R871C 0.49 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 21 34882157 34882157 G A GART Silent p.G795G 0.47 TCGA-06-5416-01 21 34924376 34924376 G T SON Missense_Mutation p.D947Y 0.18 possibly_damaging(0.861) TCGA-06-5416-01 21 34925957 34925957 C A SON Missense_Mutation p.L1474M 0.41 possibly_damaging(0.665) TCGA-06-5416-01 21 34926750 34926750 T G SON Missense_Mutation p.L1738R 0.42 possibly_damaging(0.766) TCGA-06-5416-01 21 34927010 34927010 C T SON Nonsense_Mutation p.R1825* 0.22 TCGA-06-5416-01 21 34927299 34927299 G A SON Missense_Mutation p.R1921Q 0.38 unknown(0) TCGA-06-5416-01 21 34954483 34954483 A G DONSON Missense_Mutation p.L345S 0.23 tolerated(0.46) benign(0.02) TCGA-06-5416-01 21 34958467 34958467 G A DONSON Silent p.S141S 0.45 TCGA-06-5416-01 21 34974647 34974647 A C CRYZL1 Missense_Mutation p.F157C 0.20 deleterious(0.05) possibly_damaging(0.835) TCGA-06-5416-01 21 35254658 35254658 G A ITSN1 Missense_Mutation p.D1485N 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 21 35821609 35821609 G A KCNE1 Silent p.V108V 0.46 TCGA-06-5416-01 21 36081672 36081672 C T CLIC6 Silent p.L579L 0.20 TCGA-06-5416-01 21 36171641 36171641 G A RUNX1 Silent p.S308S 0.25 TCGA-06-5416-01 21 36421316 36421316 C A RUNX1 5'UTR 0.12 TCGA-06-5416-01 21 37504963 37504963 C T CBR3 5'Flank 0.20 TCGA-06-5416-01 21 37649361 37649361 C T DOPEY2 Missense_Mutation p.S1892L 0.19 deleterious(0) possibly_damaging(0.624) TCGA-06-5416-01 21 37775128 37775128 G A CHAF1B Missense_Mutation p.G246R 0.05 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 21 37833693 37833693 C T CLDN14 Missense_Mutation p.G101R 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 21 37833709 37833709 G A CLDN14 Silent p.C95C 0.48 TCGA-06-5416-01 21 38103391 38103391 G T SIM2 Missense_Mutation p.K263N 0.38 deleterious(0) possibly_damaging(0.457) TCGA-06-5416-01 21 38126694 38126694 G A HLCS Silent p.S678S 0.24 TCGA-06-5416-01 21 38269340 38269340 G T HLCS Nonsense_Mutation p.S424* 0.15 TCGA-06-5416-01 21 38437793 38437793 G T PIGP 3'UTR 0.24 TCGA-06-5416-01 21 38461108 38461108 T C TTC3 Silent p.R116R 0.21 TCGA-06-5416-01 21 38516912 38516912 G T TTC3 Silent p.V620V 0.40 TCGA-06-5416-01 21 38525293 38525293 G A TTC3 Missense_Mutation p.R819K 0.17 deleterious(0.02) probably_damaging(0.94) TCGA-06-5416-01 21 38536358 38536358 G A TTC3 Missense_Mutation p.R1059Q 0.15 tolerated(0.59) benign(0.005) TCGA-06-5416-01 21 38612814 38612814 A C DSCR3 Missense_Mutation p.F62V 0.19 tolerated(0.07) probably_damaging(0.994) TCGA-06-5416-01 21 38852988 38852988 G T DYRK1A Missense_Mutation p.D126Y 0.40 deleterious(0) probably_damaging(0.956) TCGA-06-5416-01 21 38884217 38884217 C T DYRK1A Missense_Mutation p.R559C 0.20 tolerated_low_confidence(0.14) possibly_damaging(0.835) TCGA-06-5416-01 21 39086682 39086682 T C KCNJ6 Missense_Mutation p.I260V 0.19 tolerated(0.19) benign(0.417) TCGA-06-5416-01 21 39580622 39580622 A G DSCR10 RNA 0.45 TCGA-06-5416-01 21 39671469 39671469 G T KCNJ15 Nonsense_Mutation p.E96* 0.33 TCGA-06-5416-01 21 39671917 39671917 G A KCNJ15 Missense_Mutation p.S245N 0.48 tolerated(1) possibly_damaging(0.881) TCGA-06-5416-01 21 39672237 39672237 G A KCNJ15 Missense_Mutation p.E352K 0.23 tolerated(0.06) probably_damaging(0.995) TCGA-06-5416-01 21 39817345 39817345 C T ERG Missense_Mutation p.S80N 0.22 tolerated(0.69) benign(0) TCGA-06-5416-01 21 40191473 40191473 C T ETS2 Silent p.F286F 0.24 TCGA-06-5416-01 21 40191522 40191522 C T ETS2 Silent p.L303L 0.25 TCGA-06-5416-01 21 40550510 40550510 C T PSMG1 Missense_Mutation p.D174N 0.22 tolerated(0.06) possibly_damaging(0.844) TCGA-06-5416-01 21 40608669 40608669 C T BRWD1 Missense_Mutation p.G873D 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 21 40636563 40636563 C A BRWD1 Missense_Mutation p.D570Y 0.18 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 21 40646381 40646381 C A BRWD1 Missense_Mutation p.R388I 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 21 40717137 40717137 C T HMGN1 Missense_Mutation p.E64K 0.20 tolerated(0.14) benign(0.006) TCGA-06-5416-01 21 40765149 40765149 C T WRB Missense_Mutation p.P132S 0.22 deleterious(0.01) probably_damaging(0.928) TCGA-06-5416-01 21 40792728 40792728 G A LCA5L Silent p.S293S 0.16 TCGA-06-5416-01 21 40794851 40794851 C A LCA5L Intron 0.23 TCGA-06-5416-01 21 41032877 41032877 C A B3GALT5 Missense_Mutation p.L131M 0.22 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 21 41301012 41301012 G T PCP4 Missense_Mutation p.K55N 0.38 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 21 41385251 41385251 C A DSCAM Missense_Mutation p.G1917C 0.34 deleterious_low_confidence(0.04) benign(0.013) TCGA-06-5416-01 21 41450636 41450636 G A DSCAM Silent p.F1563F 0.20 TCGA-06-5416-01 21 41559096 41559096 G T DSCAM Missense_Mutation p.P914H 0.24 deleterious(0.02) probably_damaging(0.95) TCGA-06-5416-01 21 42551415 42551415 T C BACE2 Intron 0.29 TCGA-06-5416-01 21 42613863 42613863 G A BACE2 Missense_Mutation p.G246R 0.40 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 21 42647657 42647657 G A BACE2 3'UTR 0.22 TCGA-06-5416-01 21 42729178 42729178 G A FAM3B 3'UTR 0.24 TCGA-06-5416-01 21 42748871 42748871 G T MX2 Missense_Mutation p.R13I 0.24 deleterious_low_confidence(0.03) benign(0) TCGA-06-5416-01 21 42817434 42817434 G T MX1 Missense_Mutation p.E356D 0.20 tolerated(0.22) benign(0.393) TCGA-06-5416-01 21 42824716 42824716 G A MX1 Missense_Mutation p.D560N 0.23 tolerated(0.68) benign(0) TCGA-06-5416-01 21 42840357 42840357 G T TMPRSS2 Missense_Mutation p.A464D 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 21 43160960 43160960 G T RIPK4 3'UTR 0.15 TCGA-06-5416-01 21 43242321 43242321 C T PRDM15 Missense_Mutation p.D978N 0.48 tolerated(0.06) possibly_damaging(0.533) TCGA-06-5416-01 21 43259803 43259803 C T PRDM15 Missense_Mutation p.R633Q 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.709) TCGA-06-5416-01 21 43291640 43291640 C T PRDM15 Silent p.A168A 0.25 TCGA-06-5416-01 21 43298809 43298809 C A PRDM15 Missense_Mutation p.E136D 0.12 tolerated_low_confidence(0.42) benign(0.005) TCGA-06-5416-01 21 43714721 43714721 G A ABCG1 Missense_Mutation p.D587N 0.22 tolerated(0.37) benign(0.002) TCGA-06-5416-01 21 43804101 43804101 G A TMPRSS3 Silent p.H198H 0.42 TCGA-06-5416-01 21 43829589 43829589 C A UBASH3A Missense_Mutation p.L76I 0.28 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 21 43838642 43838642 C T UBASH3A Missense_Mutation p.R324W 0.21 deleterious(0.04) benign(0.104) TCGA-06-5416-01 21 43855035 43855035 C T UBASH3A Missense_Mutation p.S455L 0.37 tolerated(0.68) probably_damaging(0.967) TCGA-06-5416-01 21 43906544 43906544 C T RSPH1 Missense_Mutation p.G101D 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 21 43938420 43938420 G T SLC37A1 5'UTR 0.29 TCGA-06-5416-01 21 43954878 43954878 C T SLC37A1 Missense_Mutation p.S70F 0.19 tolerated(0.09) benign(0.073) TCGA-06-5416-01 21 43974181 43974181 G A SLC37A1 Missense_Mutation p.G260S 0.13 tolerated(0.78) benign(0.014) TCGA-06-5416-01 21 43974234 43974234 C T SLC37A1 Silent p.S277S 0.29 TCGA-06-5416-01 21 44189236 44189236 C A PDE9A Missense_Mutation p.L521M 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 21 44192560 44192560 G T PDE9A Missense_Mutation p.K566N 0.12 deleterious(0.03) benign(0.004) TCGA-06-5416-01 21 44323572 44323572 G A NDUFV3 Silent p.S150S 0.49 TCGA-06-5416-01 21 44329231 44329231 C T NDUFV3 3'Flank 0.44 TCGA-06-5416-01 21 44488647 44488647 C T CBS Silent p.G96G 0.19 TCGA-06-5416-01 21 44515593 44515593 G T U2AF1 Silent p.V101V 0.20 TCGA-06-5416-01 21 44515602 44515602 C A U2AF1 Missense_Mutation p.E98D 0.46 deleterious(0.04) benign(0.017) TCGA-06-5416-01 21 44589293 44589293 C T CRYAA Silent p.G28G 0.49 TCGA-06-5416-01 21 44841640 44841640 G A SIK1 Missense_Mutation p.A126V 0.20 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 21 44949704 44949704 C T HSF2BP Missense_Mutation p.R312H 0.39 tolerated(0.09) benign(0.361) TCGA-06-5416-01 21 45110219 45110219 G T RRP1B Missense_Mutation p.E639D 0.18 tolerated(0.18) benign(0.312) TCGA-06-5416-01 21 45165991 45165991 C T PDXK Silent p.D121D 0.16 TCGA-06-5416-01 21 45402214 45402214 G T AGPAT3 Missense_Mutation p.V358L 0.43 deleterious(0.03) benign(0.008) TCGA-06-5416-01 21 45457691 45457691 G A TRAPPC10 Silent p.P56P 0.44 TCGA-06-5416-01 21 45483457 45483457 A C TRAPPC10 Missense_Mutation p.K277Q 0.22 tolerated(0.35) benign(0.042) TCGA-06-5416-01 21 45494977 45494977 G A TRAPPC10 Missense_Mutation p.D415N 0.39 deleterious(0.01) possibly_damaging(0.829) TCGA-06-5416-01 21 45499952 45499952 G A TRAPPC10 Missense_Mutation p.R556H 0.33 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 21 45511806 45511806 A C TRAPPC10 Missense_Mutation p.K958T 0.56 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 21 45514103 45514103 G A TRAPPC10 Missense_Mutation p.E1053K 0.19 tolerated(0.06) benign(0.102) TCGA-06-5416-01 21 45554029 45554029 G A C21orf33 Missense_Mutation p.A63T 0.23 deleterious(0.03) possibly_damaging(0.873) TCGA-06-5416-01 21 45651221 45651221 G A ICOSLG Silent p.V268V 0.20 TCGA-06-5416-01 21 45753021 45753021 G A C21orf2 Missense_Mutation p.R90W 0.21 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 21 45773699 45773699 G A TRPM2 Missense_Mutation p.S39N 0.54 tolerated_low_confidence(0.21) benign(0.009) TCGA-06-5416-01 21 45786701 45786701 G A TRPM2 Missense_Mutation p.G163E 0.21 deleterious(0.03) possibly_damaging(0.901) TCGA-06-5416-01 21 45802613 45802613 G A TRPM2 Missense_Mutation p.V410I 0.26 tolerated(0.3) benign(0.075) TCGA-06-5416-01 21 45821679 45821679 T C TRPM2 Missense_Mutation p.F813L 0.45 deleterious(0.04) benign(0.021) TCGA-06-5416-01 21 45833946 45833946 C T TRPM2 Silent p.I1045I 0.39 TCGA-06-5416-01 21 45861622 45861622 G T TRPM2 Silent p.V1478V 0.18 TCGA-06-5416-01 21 45861630 45861630 G A TRPM2 Missense_Mutation p.R1481H 0.23 tolerated(0.13) possibly_damaging(0.781) TCGA-06-5416-01 21 45919768 45919768 G A TSPEAR Silent p.G636G 0.50 TCGA-06-5416-01 21 45924735 45924735 C T TSPEAR Missense_Mutation p.G595E 0.26 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 21 45978506 45978506 G A KRTAP10-3 Silent p.C31C 0.22 TCGA-06-5416-01 21 45994505 45994505 C T KRTAP10-4 Silent p.C290C 0.18 TCGA-06-5416-01 21 46021456 46021456 C T KRTAP10-7 Missense_Mutation p.S312F 0.12 deleterious(0.01) unknown(0) TCGA-06-5416-01 21 46032658 46032658 G A KRTAP10-8 Missense_Mutation p.R214H 0.18 tolerated(0.12) unknown(0) TCGA-06-5416-01 21 46057796 46057796 C T KRTAP10-10 Silent p.S154S 0.17 TCGA-06-5416-01 21 46074192 46074192 C T KRTAP12-4 3'UTR 0.40 TCGA-06-5416-01 21 46077974 46077974 G T KRTAP12-3 Silent p.V26V 0.46 TCGA-06-5416-01 21 46078018 46078018 C T KRTAP12-3 Missense_Mutation p.T41M 0.42 deleterious(0.04) possibly_damaging(0.611) TCGA-06-5416-01 21 46078031 46078031 C T KRTAP12-3 Silent p.C45C 0.40 TCGA-06-5416-01 21 46321460 46321460 G A ITGB2 Silent p.L230L 0.45 TCGA-06-5416-01 21 46323325 46323325 C T ITGB2 Missense_Mutation p.D152N 0.38 tolerated(0.16) benign(0.109) TCGA-06-5416-01 21 46640869 46640869 C A ADARB1 Silent p.G662G 0.40 TCGA-06-5416-01 21 46645339 46645339 G T ADARB1 3'UTR 0.18 TCGA-06-5416-01 21 46896271 46896271 G A COL18A1 Missense_Mutation p.A449T 0.26 unknown(0) TCGA-06-5416-01 21 46925334 46925334 G A COL18A1 Missense_Mutation p.A1206T 0.41 benign(0.042) TCGA-06-5416-01 21 46925776 46925776 G A COL18A1 Missense_Mutation p.A1218T 0.44 benign(0.051) TCGA-06-5416-01 21 46930143 46930143 G A COL18A1 Missense_Mutation p.D1401N 0.67 probably_damaging(0.98) TCGA-06-5416-01 21 47401789 47401789 C T COL6A1 Missense_Mutation p.P9S 0.29 tolerated(0.13) unknown(0) TCGA-06-5416-01 21 47404357 47404357 G T COL6A1 Missense_Mutation p.K134N 0.17 deleterious(0) unknown(0) TCGA-06-5416-01 21 47423044 47423044 T C COL6A1 Silent p.C815C 0.07 TCGA-06-5416-01 21 47531924 47531924 C T COL6A2 Silent p.F49F 0.32 TCGA-06-5416-01 21 47557209 47557209 A G FTCD Missense_Mutation p.Y495H 0.42 tolerated(0.09) possibly_damaging(0.599) TCGA-06-5416-01 21 47570107 47570107 G T FTCD Missense_Mutation p.L278M 0.13 tolerated(0.58) benign(0.261) TCGA-06-5416-01 21 47626638 47626638 C A LSS Missense_Mutation p.E504D 0.39 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 21 47679136 47679136 G A MCM3AP Intron 0.21 TCGA-06-5416-01 21 47685268 47685268 C T MCM3AP Silent p.P1067P 0.27 TCGA-06-5416-01 21 47742604 47742604 G A C21orf58 Missense_Mutation p.L17F 0.52 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 21 47773947 47773947 G T PCNT Missense_Mutation p.D576Y 0.18 benign(0.188) TCGA-06-5416-01 21 47786807 47786807 C T PCNT Missense_Mutation p.S973F 0.15 possibly_damaging(0.831) TCGA-06-5416-01 21 47831564 47831564 C T PCNT Silent p.F1859F 0.19 TCGA-06-5416-01 21 48019291 48019291 G T S100B Missense_Mutation p.F88L 0.21 tolerated(0.08) benign(0.002) TCGA-06-5416-01 22 16287549 16287549 C T POTEH Missense_Mutation p.G113S 0.16 tolerated_low_confidence(0.05) benign(0.013) TCGA-06-5416-01 22 16449553 16449554 - A OR11H1 Frame_Shift_Ins p.L84Ffs*53 0.14 TCGA-06-5416-01 22 16449763 16449763 G T OR11H1 Silent p.V14V 0.17 TCGA-06-5416-01 22 17072763 17072763 C T CCT8L2 Silent p.G226G 0.35 TCGA-06-5416-01 22 17308539 17308539 C T HSFY1P1 RNA 0.18 TCGA-06-5416-01 22 17309726 17309726 C A HSFY1P1 RNA 0.29 TCGA-06-5416-01 22 17443704 17443704 C T GAB4 Silent p.K548K 0.37 TCGA-06-5416-01 22 17446085 17446085 C T GAB4 Silent p.E454E 0.20 TCGA-06-5416-01 22 17473035 17473035 C A GAB4 Missense_Mutation p.R69M 0.05 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 22 17589696 17589696 C T IL17RA Silent p.F529F 0.23 TCGA-06-5416-01 22 17600982 17600982 G A CECR6 Missense_Mutation p.P346S 0.12 tolerated(0.09) possibly_damaging(0.782) TCGA-06-5416-01 22 18020143 18020143 G A CECR2 Missense_Mutation p.R492Q 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 22 18138525 18138525 G T BCL2L13 Missense_Mutation p.K16N 0.19 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 22 18185018 18185018 C T BCL2L13 Missense_Mutation p.P156S 0.13 tolerated(0.1) benign(0.207) TCGA-06-5416-01 22 18301845 18301845 C T MICAL3 Silent p.E1194E 0.15 TCGA-06-5416-01 22 18301856 18301856 T C MICAL3 Missense_Mutation p.K1191E 0.22 benign(0.022) TCGA-06-5416-01 22 18354616 18354616 G A MICAL3 Silent p.Y805Y 0.14 TCGA-06-5416-01 22 18371817 18371817 T C MICAL3 Missense_Mutation p.D625G 0.19 probably_damaging(0.972) TCGA-06-5416-01 22 18561116 18561116 G T PEX26 5'UTR 0.39 TCGA-06-5416-01 22 18604375 18604375 G A TUBA8 Missense_Mutation p.D45N 0.34 tolerated_low_confidence(0.3) benign(0) TCGA-06-5416-01 22 18609124 18609124 G T TUBA8 Missense_Mutation p.D127Y 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 22 18609668 18609668 G T TUBA8 Missense_Mutation p.R308I 0.37 deleterious_low_confidence(0) benign(0.195) TCGA-06-5416-01 22 18904407 18904407 G A PRODH Missense_Mutation p.R508C 0.47 tolerated(0.11) benign(0.013) TCGA-06-5416-01 22 18910339 18910339 C T PRODH Silent p.A280A 0.50 TCGA-06-5416-01 22 19028649 19028649 C T DGCR2 Missense_Mutation p.D440N 0.17 tolerated(0.08) possibly_damaging(0.83) TCGA-06-5416-01 22 19125796 19125796 T C DGCR14 Missense_Mutation p.E286G 0.43 deleterious(0) possibly_damaging(0.847) TCGA-06-5416-01 22 19221059 19221059 G A CLTCL1 Silent p.F418F 0.14 TCGA-06-5416-01 22 19318984 19318984 G A HIRA Silent p.L1011L 0.46 TCGA-06-5416-01 22 19344452 19344452 T C HIRA Missense_Mutation p.Y786C 0.39 deleterious(0.01) benign(0.038) TCGA-06-5416-01 22 19365469 19365469 G A HIRA Silent p.F512F 0.24 TCGA-06-5416-01 22 19379688 19379688 G A HIRA Missense_Mutation p.A291V 0.46 tolerated(0.34) benign(0.084) TCGA-06-5416-01 22 19455496 19455496 C T UFD1L Missense_Mutation p.G108S 0.41 tolerated(0.07) benign(0.009) TCGA-06-5416-01 22 19502570 19502570 C T CDC45 Missense_Mutation p.S512L 0.37 tolerated(0.09) benign(0.027) TCGA-06-5416-01 22 19708318 19708318 A G SEPT5 Missense_Mutation p.I215V 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 22 19766850 19766850 C T GNB1L 3'Flank 0.50 TCGA-06-5416-01 22 19776300 19776300 C T GNB1L Missense_Mutation p.D306N 0.22 tolerated(0.48) benign(0.021) TCGA-06-5416-01 22 19789690 19789690 G A GNB1L Missense_Mutation p.S189L 0.21 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 22 19799854 19799854 C T GNB1L Missense_Mutation p.G124D 0.16 tolerated(0.49) benign(0.005) TCGA-06-5416-01 22 19951200 19951200 C T COMT Missense_Mutation p.A134V 0.53 deleterious(0) benign(0.232) TCGA-06-5416-01 22 20020680 20020680 G T TANGO2 Intron 0.17 TCGA-06-5416-01 22 20024416 20024416 T C TANGO2 Intron 0.46 TCGA-06-5416-01 22 20100130 20100130 G A TRMT2A Missense_Mutation p.P612S 0.44 tolerated_low_confidence(0.29) benign(0.05) TCGA-06-5416-01 22 20104133 20104133 G A TRMT2A Silent p.G9G 0.24 TCGA-06-5416-01 22 20130507 20130507 C T ZDHHC8 Missense_Mutation p.R452C 0.24 deleterious(0.05) possibly_damaging(0.847) TCGA-06-5416-01 22 20132831 20132831 G A ZDHHC8 Intron 0.43 TCGA-06-5416-01 22 20230019 20230019 G A RTN4R Missense_Mutation p.R213C 0.20 deleterious(0) probably_damaging(0.937) TCGA-06-5416-01 22 20457248 20457248 G A RIMBP3 Missense_Mutation p.R1352W 0.22 deleterious(0.01) probably_damaging(0.97) TCGA-06-5416-01 22 20458216 20458216 C T RIMBP3 Missense_Mutation p.R1029Q 0.25 tolerated(1) benign(0.001) TCGA-06-5416-01 22 20755595 20755595 C T ZNF74 Silent p.I92I 0.27 TCGA-06-5416-01 22 20760988 20760988 G A ZNF74 Silent p.S555S 0.49 TCGA-06-5416-01 22 20784786 20784786 C T SCARF2 Missense_Mutation p.D378N 0.41 deleterious(0.04) possibly_damaging(0.886) TCGA-06-5416-01 22 21237824 21237824 C T SNAP29 Nonsense_Mutation p.R196* 0.43 TCGA-06-5416-01 22 21322229 21322229 C T AIFM3 5'UTR 0.48 TCGA-06-5416-01 22 21341844 21341844 C T LZTR1 Silent p.V124V 0.45 TCGA-06-5416-01 22 21348909 21348909 T C LZTR1 Missense_Mutation p.C560R 0.29 tolerated(0.55) benign(0) TCGA-06-5416-01 22 21357312 21357312 A G AC002472.1 3'Flank 0.11 TCGA-06-5416-01 22 21372283 21372283 G A P2RX6 Silent p.E107E 0.14 TCGA-06-5416-01 22 21380345 21380345 G A P2RX6 Missense_Mutation p.G344R 0.14 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 22 21385120 21385120 C T SLC7A4 Missense_Mutation p.A328T 0.20 deleterious(0.01) possibly_damaging(0.668) TCGA-06-5416-01 22 21965263 21965263 G A UBE2L3 Missense_Mutation p.E139K 0.45 deleterious(0.05) possibly_damaging(0.83) TCGA-06-5416-01 22 21990747 21990747 G A CCDC116 Silent p.T410T 0.38 TCGA-06-5416-01 22 22048901 22048901 G A PPIL2 Missense_Mutation p.V406I 0.38 deleterious(0.03) benign(0.017) TCGA-06-5416-01 22 22160191 22160191 T C MAPK1 Missense_Mutation p.H147R 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 22 22287885 22287885 C T PPM1F Missense_Mutation p.A209T 0.34 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 22 22300359 22300359 C T PPM1F Missense_Mutation p.G21D 0.43 tolerated(0.25) benign(0.01) TCGA-06-5416-01 22 22516978 22516978 G A IGLV4-60 Missense_Mutation p.G89D 0.34 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 22 22681890 22681890 G A IGLV1-50 Silent p.T24T 0.59 TCGA-06-5416-01 22 22764448 22764448 G T IGLV1-40 Missense_Mutation p.A64S 0.41 tolerated_low_confidence(0.18) benign(0.125) TCGA-06-5416-01 22 22869091 22869091 C A ZNF280A Silent p.G288G 0.19 TCGA-06-5416-01 22 23029638 23029638 C A IGLV3-25 Missense_Mutation p.F80L 0.18 deleterious(0.01) probably_damaging(0.927) TCGA-06-5416-01 22 23063433 23063433 G T IGLV3-19 Missense_Mutation p.R47I 0.51 deleterious(0.05) benign(0.418) TCGA-06-5416-01 22 23135387 23135387 C A IGLV2-11 Missense_Mutation p.F83L 0.45 deleterious_low_confidence(0.02) benign(0.433) TCGA-06-5416-01 22 23401624 23401624 G T RTDR1 3'UTR 0.10 TCGA-06-5416-01 22 23438129 23438129 C T GNAZ Missense_Mutation p.R83C 0.07 deleterious(0.01) possibly_damaging(0.589) TCGA-06-5416-01 22 23438398 23438398 C T GNAZ Silent p.V172V 0.43 TCGA-06-5416-01 22 23438412 23438412 G A GNAZ Missense_Mutation p.R177H 0.45 tolerated(0.1) probably_damaging(0.996) TCGA-06-5416-01 22 23487544 23487544 C A RAB36 5'UTR 0.44 TCGA-06-5416-01 22 23524240 23524240 G A BCR Missense_Mutation p.D365N 0.13 deleterious_low_confidence(0) possibly_damaging(0.811) TCGA-06-5416-01 22 23917270 23917270 C T IGLL1 Splice_Site p.X69_splice 0.17 TCGA-06-5416-01 22 23980961 23980961 C T GUSBP11 RNA 0.18 TCGA-06-5416-01 22 24034517 24034517 A G RGL4 Intron 0.17 TCGA-06-5416-01 22 24040479 24040479 C A RGL4 Silent p.V447V 0.18 TCGA-06-5416-01 22 24086579 24086579 C T ZNF70 Missense_Mutation p.R250K 0.29 tolerated(1) benign(0.001) TCGA-06-5416-01 22 24095228 24095228 G A VPREB3 Silent p.L69L 0.26 TCGA-06-5416-01 22 24106575 24106575 C T C22orf15 Missense_Mutation p.R81W 0.26 deleterious(0) possibly_damaging(0.899) TCGA-06-5416-01 22 24219270 24219270 G A AP000350.10 Missense_Mutation p.A115T 0.44 deleterious(0.01) possibly_damaging(0.866) TCGA-06-5416-01 22 24300556 24300556 C A GSTT2B Missense_Mutation p.E147D 0.52 deleterious(0.01) possibly_damaging(0.704) TCGA-06-5416-01 22 24313714 24313714 G T DDT 3'UTR 0.46 TCGA-06-5416-01 22 24323191 24323191 G A GSTT2 Silent p.P55P 0.44 TCGA-06-5416-01 22 24487598 24487598 G A CABIN1 Missense_Mutation p.R1196H 0.24 tolerated(0.21) benign(0) TCGA-06-5416-01 22 24562757 24562757 G A CABIN1 Missense_Mutation p.E1720K 0.54 tolerated_low_confidence(0.07) probably_damaging(0.991) TCGA-06-5416-01 22 24573719 24573719 G A CABIN1 Silent p.T2151T 0.45 TCGA-06-5416-01 22 24580247 24580247 G A SUSD2 Missense_Mutation p.E195K 0.17 deleterious(0) possibly_damaging(0.797) TCGA-06-5416-01 22 24584467 24584467 G A SUSD2 3'UTR 0.36 TCGA-06-5416-01 22 24717534 24717534 G T SPECC1L Missense_Mutation p.D196Y 0.40 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 22 24911318 24911318 G A UPB1 Silent p.S257S 0.19 TCGA-06-5416-01 22 25011034 25011034 G A GGT1 Missense_Mutation p.E108K 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 22 25119154 25119154 T G PIWIL3 Missense_Mutation p.N776T 0.47 tolerated(0.63) benign(0.023) TCGA-06-5416-01 22 25120956 25120956 A C PIWIL3 Missense_Mutation p.V719G 0.38 deleterious(0) possibly_damaging(0.785) TCGA-06-5416-01 22 25144901 25144901 G A PIWIL3 Silent p.N474N 0.23 TCGA-06-5416-01 22 25294165 25294165 G A SGSM1 Missense_Mutation p.R805Q 0.45 tolerated(0.64) benign(0.001) TCGA-06-5416-01 22 25603198 25603198 G T CRYBB3 3'UTR 0.29 TCGA-06-5416-01 22 25750564 25750564 G A LRP5L Silent p.V218V 0.11 TCGA-06-5416-01 22 26118504 26118504 C T ADRBK2 3'UTR 0.25 TCGA-06-5416-01 22 26239781 26239781 C T MYO18B Silent p.Y1096Y 0.22 TCGA-06-5416-01 22 26422832 26422832 G A MYO18B Missense_Mutation p.E2298K 0.24 tolerated(0.12) benign(0.024) TCGA-06-5416-01 22 26423149 26423149 G A MYO18B Silent p.P2403P 0.22 TCGA-06-5416-01 22 26838491 26838491 G A ASPHD2 Missense_Mutation p.R318H 0.45 tolerated(0.83) benign(0.028) TCGA-06-5416-01 22 26860333 26860333 G A HPS4 Silent p.A421A 0.30 TCGA-06-5416-01 22 26888146 26888146 C A TFIP11 Nonsense_Mutation p.E783* 0.23 TCGA-06-5416-01 22 28146888 28146888 G T MN1 3'UTR 0.32 TCGA-06-5416-01 22 28193314 28193314 C T MN1 Missense_Mutation p.S1073N 0.52 benign(0.005) TCGA-06-5416-01 22 28193372 28193372 C T MN1 Missense_Mutation p.A1054T 0.40 benign(0.003) TCGA-06-5416-01 22 29538204 29538204 C T KREMEN1 Intron 0.17 TCGA-06-5416-01 22 29630328 29630328 C T EMID1 Missense_Mutation p.A355V 0.47 tolerated(0.29) benign(0.038) TCGA-06-5416-01 22 29727501 29727501 C T AP1B1 Missense_Mutation p.D821N 0.39 deleterious(0.04) benign(0.015) TCGA-06-5416-01 22 29745285 29745285 G A AP1B1 Silent p.G453G 0.44 TCGA-06-5416-01 22 29834826 29834826 G A RFPL1 Missense_Mutation p.G16R 0.44 tolerated_low_confidence(0.17) benign(0.094) TCGA-06-5416-01 22 29837728 29837728 G T RFPL1 Nonsense_Mutation p.E191* 0.15 TCGA-06-5416-01 22 30038260 30038260 G A NF2 Missense_Mutation p.A145T 0.40 deleterious(0) probably_damaging(0.919) TCGA-06-5416-01 22 30069387 30069387 C T NF2 Missense_Mutation p.R418C 0.28 deleterious(0) possibly_damaging(0.901) TCGA-06-5416-01 22 30074260 30074260 G A NF2 Missense_Mutation p.D508N 0.47 deleterious(0.03) probably_damaging(0.983) TCGA-06-5416-01 22 30202231 30202231 G T ASCC2 Missense_Mutation p.S378R 0.23 deleterious(0.01) benign(0.439) TCGA-06-5416-01 22 30398894 30398894 C T MTMR3 Missense_Mutation p.L195F 0.16 tolerated(0.05) probably_damaging(0.978) TCGA-06-5416-01 22 30415929 30415929 T C MTMR3 Missense_Mutation p.F761L 0.37 tolerated_low_confidence(0.88) benign(0.001) TCGA-06-5416-01 22 30421685 30421685 C T MTMR3 Silent p.L1164L 0.24 TCGA-06-5416-01 22 30494971 30494971 G A HORMAD2 Missense_Mutation p.R61H 0.47 deleterious(0.02) benign(0.212) TCGA-06-5416-01 22 30572149 30572149 G T HORMAD2 Missense_Mutation p.R306I 0.18 deleterious_low_confidence(0) possibly_damaging(0.468) TCGA-06-5416-01 22 30660208 30660208 C T OSM Silent p.P141P 0.46 TCGA-06-5416-01 22 30683192 30683192 G A GATSL3 Missense_Mutation p.P153S 0.25 tolerated(0.41) benign(0.024) TCGA-06-5416-01 22 30766747 30766747 C T CCDC157 Missense_Mutation p.R285C 0.15 tolerated(0.1) benign(0.004) TCGA-06-5416-01 22 30769972 30769972 C T CCDC157 Missense_Mutation p.R522W 0.44 deleterious(0) possibly_damaging(0.897) TCGA-06-5416-01 22 30818505 30818505 G T SEC14L2 3'UTR 0.23 TCGA-06-5416-01 22 30824702 30824702 G A RP4-539M6.19 3'UTR 0.48 TCGA-06-5416-01 22 30886219 30886219 C T SEC14L4 Missense_Mutation p.D366N 0.17 deleterious(0.02) possibly_damaging(0.749) TCGA-06-5416-01 22 30888528 30888528 G A SEC14L4 Silent p.P199P 0.49 TCGA-06-5416-01 22 30890140 30890140 G A SEC14L4 Nonsense_Mutation p.R193* 0.24 TCGA-06-5416-01 22 31019058 31019058 C A TCN2 Missense_Mutation p.P404T 0.38 deleterious(0.02) benign(0.363) TCGA-06-5416-01 22 31137214 31137214 G A OSBP2 Silent p.T237T 0.49 TCGA-06-5416-01 22 31283464 31283464 C T OSBP2 Missense_Mutation p.R387W 0.45 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 22 31487140 31487140 C A SMTN Silent p.S377S 0.51 TCGA-06-5416-01 22 31497024 31497024 C T SMTN Intron 0.31 TCGA-06-5416-01 22 31500983 31500983 C A SELM Missense_Mutation p.E137D 0.24 tolerated_low_confidence(0.2) benign(0) TCGA-06-5416-01 22 31522434 31522434 C T INPP5J Silent p.G80G 0.17 TCGA-06-5416-01 22 31523936 31523936 G T INPP5J Splice_Site p.X228_splice 0.16 TCGA-06-5416-01 22 31535886 31535886 G T PLA2G3 Missense_Mutation p.T152N 0.14 deleterious(0) benign(0.152) TCGA-06-5416-01 22 31536314 31536314 C T PLA2G3 Silent p.G9G 0.47 TCGA-06-5416-01 22 31671136 31671136 G T LIMK2 Splice_Site p.X518_splice 0.39 TCGA-06-5416-01 22 31673214 31673214 G A LIMK2 3'UTR 0.10 TCGA-06-5416-01 22 31724795 31724795 G A PATZ1 Silent p.C541C 0.17 TCGA-06-5416-01 22 31724885 31724885 C T PATZ1 Silent p.K511K 0.42 TCGA-06-5416-01 22 31904359 31904359 C T SFI1 Missense_Mutation p.S30F 0.52 tolerated(0.11) benign(0.006) TCGA-06-5416-01 22 31976319 31976319 G T SFI1 Missense_Mutation p.R406M 0.26 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 22 31981079 31981079 G A SFI1 Missense_Mutation p.E458K 0.19 tolerated(1) benign(0) TCGA-06-5416-01 22 32016667 32016667 G A PISD Missense_Mutation p.R259C 0.52 deleterious(0) possibly_damaging(0.888) TCGA-06-5416-01 22 32239728 32239728 G A DEPDC5 Missense_Mutation p.E902K 0.21 deleterious(0) possibly_damaging(0.679) TCGA-06-5416-01 22 32330097 32330097 C T C22orf24 3'UTR 0.31 TCGA-06-5416-01 22 32330210 32330210 G A C22orf24 Missense_Mutation p.S126L 0.57 tolerated_low_confidence(0.84) possibly_damaging(0.776) TCGA-06-5416-01 22 32352768 32352768 G A YWHAH Missense_Mutation p.E244K 0.26 deleterious_low_confidence(0.04) benign(0.345) TCGA-06-5416-01 22 32482250 32482250 C T SLC5A1 Silent p.C355C 0.41 TCGA-06-5416-01 22 32587298 32587298 G T RFPL2 Missense_Mutation p.L200I 0.24 tolerated(1) benign(0.306) TCGA-06-5416-01 22 32625221 32625221 G A SLC5A4 Missense_Mutation p.R414W 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 22 32754338 32754338 C T RFPL3 Missense_Mutation p.R94W 0.25 tolerated(0.19) benign(0) TCGA-06-5416-01 22 32811978 32811978 G A BPIFC Missense_Mutation p.A442V 0.51 tolerated(0.08) possibly_damaging(0.542) TCGA-06-5416-01 22 33254100 33254100 G A TIMP3 Missense_Mutation p.R138Q 0.41 deleterious(0.01) benign(0.384) TCGA-06-5416-01 22 33402533 33402533 C T SYN3 Missense_Mutation p.A39T 0.45 tolerated(0.18) unknown(0) TCGA-06-5416-01 22 35734771 35734771 G T TOM1 Missense_Mutation p.S405I 0.20 tolerated(0.06) benign(0.252) TCGA-06-5416-01 22 35802676 35802676 G A MCM5 Missense_Mutation p.R185H 0.22 tolerated(0.08) possibly_damaging(0.628) TCGA-06-5416-01 22 35947776 35947776 C T RASD2 Silent p.C166C 0.21 TCGA-06-5416-01 22 36054723 36054723 G A APOL6 Missense_Mutation p.E38K 0.40 tolerated(0.08) possibly_damaging(0.467) TCGA-06-5416-01 22 36142020 36142020 C T RBFOX2 Missense_Mutation p.D421N 0.19 probably_damaging(0.999) TCGA-06-5416-01 22 36624256 36624256 G A APOL2 Missense_Mutation p.R70C 0.21 tolerated(0.18) possibly_damaging(0.877) TCGA-06-5416-01 22 36684303 36684303 G A MYH9 Silent p.L1643L 0.48 TCGA-06-5416-01 22 36688274 36688274 C T MYH9 Missense_Mutation p.D1368N 0.45 benign(0.364) TCGA-06-5416-01 22 36695010 36695010 C T MYH9 Missense_Mutation p.A1019T 0.24 benign(0.001) TCGA-06-5416-01 22 36702505 36702505 C T MYH9 Silent p.T664T 0.45 TCGA-06-5416-01 22 36716924 36716924 G A MYH9 Missense_Mutation p.R263C 0.24 probably_damaging(0.997) TCGA-06-5416-01 22 36745298 36745298 G T MYH9 Intron 0.17 TCGA-06-5416-01 22 36894070 36894070 G A FOXRED2 Silent p.F450F 0.42 TCGA-06-5416-01 22 36907740 36907740 G T EIF3D Missense_Mutation p.N481K 0.08 deleterious(0.01) benign(0.445) TCGA-06-5416-01 22 36920000 36920000 G A EIF3D Missense_Mutation p.R112W 0.40 deleterious(0.05) probably_damaging(0.959) TCGA-06-5416-01 22 36920690 36920690 G A EIF3D Missense_Mutation p.R87C 0.20 deleterious(0) probably_damaging(0.927) TCGA-06-5416-01 22 37196771 37196771 C A PVALB 3'UTR 0.43 TCGA-06-5416-01 22 37196802 37196802 A G PVALB 3'UTR 0.14 TCGA-06-5416-01 22 37322050 37322050 C A CSF2RB Silent p.S74S 0.44 TCGA-06-5416-01 22 37328903 37328903 A G CSF2RB Missense_Mutation p.H370R 0.15 tolerated(0.06) possibly_damaging(0.568) TCGA-06-5416-01 22 37332600 37332600 G A CSF2RB Missense_Mutation p.A492T 0.22 tolerated(0.1) benign(0.082) TCGA-06-5416-01 22 37387585 37387585 C A TEX33 Nonsense_Mutation p.E228* 0.40 TCGA-06-5416-01 22 37449184 37449184 C T KCTD17 Silent p.F85F 0.64 TCGA-06-5416-01 22 37494538 37494538 A G TMPRSS6 Missense_Mutation p.V94A 0.20 deleterious(0) possibly_damaging(0.887) TCGA-06-5416-01 22 37602634 37602634 C T SSTR3 Silent p.E403E 0.18 TCGA-06-5416-01 22 37603089 37603089 C T SSTR3 Missense_Mutation p.E252K 0.18 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 22 37603530 37603530 C T SSTR3 Missense_Mutation p.A105T 0.16 tolerated(0.08) possibly_damaging(0.784) TCGA-06-5416-01 22 37622778 37622778 C T RAC2 Missense_Mutation p.A172T 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.538) TCGA-06-5416-01 22 37622785 37622785 G A RAC2 Silent p.F169F 0.50 TCGA-06-5416-01 22 37640212 37640212 C T RAC2 5'UTR 0.37 TCGA-06-5416-01 22 37769847 37769847 G A ELFN2 Silent p.F576F 0.54 TCGA-06-5416-01 22 37769901 37769901 G A ELFN2 Silent p.D558D 0.47 TCGA-06-5416-01 22 38019458 38019458 G A GGA1 Missense_Mutation p.S245N 0.18 tolerated(0.78) benign(0.026) TCGA-06-5416-01 22 38075664 38075664 G A LGALS1 Missense_Mutation p.E106K 0.21 deleterious(0.04) benign(0.179) TCGA-06-5416-01 22 38075745 38075745 G A LGALS1 Missense_Mutation p.A133T 0.45 tolerated(0.42) benign(0.018) TCGA-06-5416-01 22 38121010 38121010 G T TRIOBP Missense_Mutation p.R816I 0.44 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-06-5416-01 22 38121191 38121191 G T TRIOBP Missense_Mutation p.E876D 0.23 tolerated_low_confidence(1) benign(0.001) TCGA-06-5416-01 22 38121496 38121496 C A TRIOBP Missense_Mutation p.S978Y 0.26 deleterious_low_confidence(0) benign(0.442) TCGA-06-5416-01 22 38165346 38165346 C T TRIOBP Silent p.C2271C 0.25 TCGA-06-5416-01 22 38201621 38201621 G T H1F0 Missense_Mutation p.D24Y 0.26 deleterious(0.02) probably_damaging(0.963) TCGA-06-5416-01 22 38206166 38206166 T C GCAT Splice_Site p.X135_splice 0.25 TCGA-06-5416-01 22 38243727 38243727 G T ANKRD54 5'Flank 0.20 TCGA-06-5416-01 22 38259334 38259334 C T EIF3L Silent p.I187I 0.29 TCGA-06-5416-01 22 38469079 38469079 G A PICK1 Missense_Mutation p.D255N 0.49 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 22 38474442 38474442 C T SLC16A8 Missense_Mutation p.E490K 0.42 tolerated(0.17) benign(0.012) TCGA-06-5416-01 22 38541609 38541609 A C PLA2G6 Nonsense_Mutation p.Y87* 0.19 TCGA-06-5416-01 22 38823368 38823368 G A KCNJ4 Missense_Mutation p.S257L 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-06-5416-01 22 38823442 38823442 G A KCNJ4 Silent p.G232G 0.23 TCGA-06-5416-01 22 38882426 38882426 C T DDX17 Silent p.R570R 0.18 TCGA-06-5416-01 22 38894152 38894152 G A DDX17 Missense_Mutation p.L226F 0.16 deleterious(0) probably_damaging(0.961) TCGA-06-5416-01 22 38894462 38894462 A G DDX17 Missense_Mutation p.S219P 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 22 38895482 38895482 C T DDX17 Missense_Mutation p.R154Q 0.28 tolerated(0.16) benign(0.002) TCGA-06-5416-01 22 39066895 39066895 C T CBY1 Nonsense_Mutation p.R29* 0.17 TCGA-06-5416-01 22 39079775 39079775 C A TOMM22 Missense_Mutation p.L120I 0.41 deleterious(0.01) probably_damaging(0.958) TCGA-06-5416-01 22 39132202 39132202 G A GTPBP1 3'Flank 0.23 TCGA-06-5416-01 22 39218644 39218644 G A NPTXR Silent p.F491F 0.44 TCGA-06-5416-01 22 39218761 39218761 G A NPTXR Silent p.A452A 0.17 TCGA-06-5416-01 22 39262956 39262956 G A CBX6 Missense_Mutation p.P166L 0.50 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 22 39262979 39262979 G T CBX6 Silent p.R158R 0.17 TCGA-06-5416-01 22 39439036 39439036 G A APOBEC3F Missense_Mutation p.E38K 0.42 tolerated(0.15) benign(0.265) TCGA-06-5416-01 22 39479805 39479805 G T APOBEC3G Missense_Mutation p.E217D 0.46 deleterious(0.02) benign(0.154) TCGA-06-5416-01 22 39497291 39497291 G A APOBEC3H Missense_Mutation p.G67E 0.41 tolerated(1) benign(0.017) TCGA-06-5416-01 22 39710735 39710735 C T RPL3 Missense_Mutation p.A269T 0.40 deleterious(0.01) benign(0.284) TCGA-06-5416-01 22 39811558 39811558 G A TAB1 Missense_Mutation p.R75Q 0.19 tolerated(0.05) benign(0.208) TCGA-06-5416-01 22 39884023 39884023 G A MGAT3 Missense_Mutation p.R224H 0.20 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 22 40030576 40030576 G A CACNA1I Missense_Mutation p.R196Q 0.22 deleterious(0) possibly_damaging(0.691) TCGA-06-5416-01 22 40078546 40078546 G A CACNA1I Missense_Mutation p.E1904K 0.20 tolerated(0.08) benign(0.305) TCGA-06-5416-01 22 40139868 40139868 G A ENTHD1 Missense_Mutation p.S547F 0.18 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 22 40139897 40139897 G A ENTHD1 Silent p.D537D 0.24 TCGA-06-5416-01 22 40140047 40140047 G A ENTHD1 Silent p.S487S 0.16 TCGA-06-5416-01 22 40217120 40217120 T C ENTHD1 Splice_Site p.X238_splice 0.29 TCGA-06-5416-01 22 40283748 40283748 G A ENTHD1 Missense_Mutation p.A2V 0.40 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 22 40356095 40356095 G T GRAP2 Missense_Mutation p.E69D 0.27 deleterious(0.01) possibly_damaging(0.703) TCGA-06-5416-01 22 40367183 40367183 C A GRAP2 3'UTR 0.34 TCGA-06-5416-01 22 40417579 40417579 G A FAM83F Silent p.P355P 0.26 TCGA-06-5416-01 22 40662789 40662789 G A TNRC6B Missense_Mutation p.R852Q 0.39 deleterious(0) possibly_damaging(0.903) TCGA-06-5416-01 22 40804367 40804367 C T SGSM3 Silent p.F572F 0.20 TCGA-06-5416-01 22 41077376 41077376 C T MCHR1 Missense_Mutation p.A238V 0.47 tolerated(0.72) benign(0.018) TCGA-06-5416-01 22 41277836 41277836 C A XPNPEP3 Missense_Mutation p.L82M 0.22 tolerated(0.19) possibly_damaging(0.895) TCGA-06-5416-01 22 41531837 41531837 A T EP300 Missense_Mutation p.N517Y 0.49 unknown(0) TCGA-06-5416-01 22 41537078 41537078 G T EP300 Missense_Mutation p.E635D 0.35 unknown(0) TCGA-06-5416-01 22 41547910 41547910 C A EP300 Missense_Mutation p.S964Y 0.53 probably_damaging(0.947) TCGA-06-5416-01 22 41556655 41556655 C A EP300 Missense_Mutation p.F1200L 0.44 benign(0.437) TCGA-06-5416-01 22 41574648 41574648 G A EP300 Silent p.Q2311Q 0.38 TCGA-06-5416-01 22 41612226 41612226 G T L3MBTL2 Silent p.G160G 0.19 TCGA-06-5416-01 22 41623254 41623254 C T L3MBTL2 Silent p.C583C 0.60 TCGA-06-5416-01 22 41677122 41677122 C A RANGAP1 5'UTR 0.20 TCGA-06-5416-01 22 42195343 42195343 G T MEI1 3'UTR 0.28 TCGA-06-5416-01 22 42269956 42269956 G A SREBF2 Missense_Mutation p.R341Q 0.48 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 22 42276881 42276881 C A SREBF2 Silent p.V641V 0.23 TCGA-06-5416-01 22 42388764 42388764 G A SEPT3 Missense_Mutation p.E288K 0.19 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 22 42462729 42462729 G A NAGA Silent p.G194G 0.44 TCGA-06-5416-01 22 42463265 42463265 G T NAGA Silent p.I118I 0.42 TCGA-06-5416-01 22 42475806 42475806 G A SMDT1 Missense_Mutation p.A12T 0.35 tolerated(0.43) benign(0.058) TCGA-06-5416-01 22 42482094 42482094 C T NDUFA6 3'UTR 0.07 TCGA-06-5416-01 22 42525160 42525160 G A CYP2D6 Missense_Mutation p.A127V 0.13 tolerated(0.33) benign(0.073) TCGA-06-5416-01 22 42607211 42607211 G A TCF20 Silent p.S1367S 0.22 TCGA-06-5416-01 22 42608115 42608115 T G TCF20 Missense_Mutation p.N1066T 0.26 probably_damaging(0.996) TCGA-06-5416-01 22 42608200 42608200 T A TCF20 Missense_Mutation p.T1038S 0.27 benign(0.002) TCGA-06-5416-01 22 42608524 42608524 C A TCF20 Nonsense_Mutation p.E930* 0.21 TCGA-06-5416-01 22 42610458 42610458 C A TCF20 Missense_Mutation p.G285V 0.46 probably_damaging(1) TCGA-06-5416-01 22 42896685 42896685 G A SERHL RNA 0.21 TCGA-06-5416-01 22 43089143 43089143 G A A4GALT Missense_Mutation p.A272V 0.46 tolerated(0.08) benign(0.006) TCGA-06-5416-01 22 43089903 43089903 G A A4GALT Missense_Mutation p.R19W 0.29 tolerated_low_confidence(0.07) benign(0.043) TCGA-06-5416-01 22 43231405 43231405 G A ARFGAP3 Missense_Mutation p.S119L 0.18 deleterious(0.03) benign(0.26) TCGA-06-5416-01 22 43272953 43272953 G A PACSIN2 Silent p.F364F 0.45 TCGA-06-5416-01 22 43435699 43435699 G T TTLL1 3'UTR 0.16 TCGA-06-5416-01 22 43464415 43464415 C T TTLL1 Splice_Site p.X168_splice 0.43 TCGA-06-5416-01 22 43520110 43520110 G A BIK Missense_Mutation p.E28K 0.26 tolerated(0.13) probably_damaging(0.945) TCGA-06-5416-01 22 43520164 43520164 G A BIK Missense_Mutation p.D46N 0.47 tolerated(0.47) benign(0.001) TCGA-06-5416-01 22 43525391 43525391 T G BIK 3'UTR 0.29 TCGA-06-5416-01 22 43572372 43572372 G A TTLL12 Missense_Mutation p.P291S 0.32 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 22 43600129 43600129 G A SCUBE1 Silent p.F947F 0.43 TCGA-06-5416-01 22 43654236 43654236 C T SCUBE1 Missense_Mutation p.R239H 0.44 tolerated(0.13) benign(0.013) TCGA-06-5416-01 22 44127686 44127686 G A EFCAB6 Missense_Mutation p.S217L 0.47 tolerated(0.36) benign(0.003) TCGA-06-5416-01 22 44282342 44282342 T C PNPLA5 Missense_Mutation p.T264A 0.35 tolerated(0.51) benign(0.114) TCGA-06-5416-01 22 44285417 44285417 C T PNPLA5 Missense_Mutation p.R165H 0.44 tolerated(0.06) benign(0.282) TCGA-06-5416-01 22 44286981 44286981 G T PNPLA5 Missense_Mutation p.F129L 0.24 tolerated(0.1) benign(0.004) TCGA-06-5416-01 22 44553950 44553950 G T PARVB Missense_Mutation p.S344I 0.22 deleterious(0) possibly_damaging(0.644) TCGA-06-5416-01 22 44892504 44892504 G A LDOC1L 3'UTR 0.21 TCGA-06-5416-01 22 45258499 45258499 C T ARHGAP8 3'UTR 0.28 TCGA-06-5416-01 22 45279120 45279120 C T PHF21B Missense_Mutation p.R481H 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 22 45291944 45291944 G A PHF21B Missense_Mutation p.A284V 0.14 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 22 45312200 45312200 C T PHF21B Missense_Mutation p.S175N 0.12 deleterious(0.02) possibly_damaging(0.501) TCGA-06-5416-01 22 45728369 45728369 C T FAM118A Missense_Mutation p.R239C 0.20 tolerated(0.1) probably_damaging(0.987) TCGA-06-5416-01 22 45768045 45768045 G T SMC1B Missense_Mutation p.A729D 0.17 tolerated(0.62) benign(0.013) TCGA-06-5416-01 22 45802418 45802418 C A SMC1B Nonsense_Mutation p.E180* 0.18 TCGA-06-5416-01 22 45923852 45923852 G T FBLN1 Missense_Mutation p.E149D 0.15 tolerated(0.13) possibly_damaging(0.636) TCGA-06-5416-01 22 45996446 45996446 G T FBLN1 3'UTR 0.23 TCGA-06-5416-01 22 46098707 46098707 A G ATXN10 Silent p.K209K 0.18 TCGA-06-5416-01 22 46327206 46327206 G A WNT7B Silent p.G114G 0.34 TCGA-06-5416-01 22 46641057 46641057 G A CDPF1 Missense_Mutation p.R102W 0.39 deleterious(0) probably_damaging(0.912) TCGA-06-5416-01 22 46653000 46653000 C T PKDREJ Missense_Mutation p.D2074N 0.15 tolerated(0.15) possibly_damaging(0.67) TCGA-06-5416-01 22 46653372 46653372 G A PKDREJ Missense_Mutation p.H1950Y 0.19 tolerated(0.19) benign(0.065) TCGA-06-5416-01 22 46654074 46654074 T C PKDREJ Missense_Mutation p.T1716A 0.45 deleterious(0.05) benign(0.077) TCGA-06-5416-01 22 46655859 46655859 G A PKDREJ Missense_Mutation p.L1121F 0.40 deleterious(0.01) probably_damaging(0.955) TCGA-06-5416-01 22 46657830 46657830 C T PKDREJ Missense_Mutation p.E464K 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 22 46658207 46658207 G A PKDREJ Missense_Mutation p.A338V 0.42 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 22 46752824 46752824 G A TRMU Missense_Mutation p.G396D 0.51 deleterious(0.04) benign(0.325) TCGA-06-5416-01 22 46780572 46780572 C T CELSR1 Missense_Mutation p.D2251N 0.15 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 22 46807546 46807546 G A CELSR1 Silent p.I1574I 0.19 TCGA-06-5416-01 22 46859983 46859983 G A CELSR1 Silent p.G1268G 0.36 TCGA-06-5416-01 22 46860058 46860058 G A CELSR1 Silent p.F1243F 0.45 TCGA-06-5416-01 22 46932289 46932289 G A CELSR1 Missense_Mutation p.A260V 0.20 tolerated(0.08) probably_damaging(0.916) TCGA-06-5416-01 22 47062753 47062753 G A GRAMD4 Missense_Mutation p.E281K 0.18 tolerated(0.13) benign(0.283) TCGA-06-5416-01 22 47069575 47069575 G A GRAMD4 Silent p.T416T 0.51 TCGA-06-5416-01 22 50169785 50169785 C T BRD1 Nonsense_Mutation p.W917* 0.17 TCGA-06-5416-01 22 50170776 50170776 C T BRD1 Silent p.P878P 0.37 TCGA-06-5416-01 22 50216631 50216631 C T BRD1 Silent p.P445P 0.44 TCGA-06-5416-01 22 50217945 50217945 A G BRD1 Silent p.C7C 0.17 TCGA-06-5416-01 22 50218052 50218052 C T BRD1 5'UTR 0.24 TCGA-06-5416-01 22 50280880 50280880 C A ZBED4 3'UTR 0.19 TCGA-06-5416-01 22 50304185 50304185 G A ALG12 Silent p.F122F 0.40 TCGA-06-5416-01 22 50355351 50355351 G A PIM3 Missense_Mutation p.D170N 0.30 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 22 50552935 50552935 T C MOV10L1 Missense_Mutation p.V337A 0.25 tolerated(0.31) benign(0.003) TCGA-06-5416-01 22 50572472 50572472 C T MOV10L1 Silent p.H649H 0.19 TCGA-06-5416-01 22 50589214 50589214 A G MOV10L1 Silent p.R926R 0.17 TCGA-06-5416-01 22 50591502 50591502 C T MOV10L1 Missense_Mutation p.S974F 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 22 50616003 50616003 C T PANX2 Missense_Mutation p.R288C 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 22 50616011 50616011 C T PANX2 Silent p.I290I 0.42 TCGA-06-5416-01 22 50655759 50655759 G A SELO Silent p.P657P 0.15 TCGA-06-5416-01 22 50684745 50684745 G T HDAC10 Silent p.V544V 0.20 TCGA-06-5416-01 22 50719186 50719186 G A PLXNB2 Missense_Mutation p.S1327F 0.32 deleterious(0.03) probably_damaging(0.941) TCGA-06-5416-01 22 50720124 50720124 G A PLXNB2 Silent p.F1131F 0.18 TCGA-06-5416-01 22 50752082 50752082 C A DENND6B Missense_Mutation p.Q425H 0.35 deleterious(0.05) benign(0.027) TCGA-06-5416-01 22 50885233 50885233 C T SBF1 3'UTR 0.31 TCGA-06-5416-01 22 50893530 50893530 G T SBF1 Missense_Mutation p.F1532L 0.51 deleterious(0.05) benign(0.228) TCGA-06-5416-01 22 50921230 50921230 C T ADM2 Silent p.C115C 0.21 TCGA-06-5416-01 22 50925310 50925310 C T MIOX 5'UTR 0.24 TCGA-06-5416-01 22 50945390 50945390 G A LMF2 Silent p.L57L 0.18 TCGA-06-5416-01 22 50968041 50968041 G A TYMP Missense_Mutation p.P33L 0.31 deleterious_low_confidence(0.01) benign(0.04) TCGA-06-5416-01 22 50987888 50987888 C T KLHDC7B Silent p.R431R 0.20 TCGA-06-5416-01 22 51010477 51010477 C T CPT1B Silent p.A511A 0.21 TCGA-06-5416-01 22 51017893 51017893 G A CHKB Missense_Mutation p.L359F 0.64 tolerated(0.1) benign(0.1) TCGA-06-5416-01 2 100055473 100055473 C A REV1 Missense_Mutation p.S268I 0.23 tolerated(0.17) benign(0.002) TCGA-06-5416-01 2 10022847 10022847 G A TAF1B Silent p.E240E 0.31 TCGA-06-5416-01 2 100628010 100628010 C A AFF3 Missense_Mutation p.R26M 0.58 deleterious_low_confidence(0) benign(0.111) TCGA-06-5416-01 2 100919405 100919405 G T LONRF2 Missense_Mutation p.S300Y 0.35 deleterious(0.03) benign(0.259) TCGA-06-5416-01 2 101014547 101014547 G A CHST10 Missense_Mutation p.R84C 0.48 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 101097607 101097607 G A NMS Missense_Mutation p.G131E 0.24 tolerated(0.05) benign(0.219) TCGA-06-5416-01 2 101564727 101564727 T G NPAS2 Missense_Mutation p.F132V 0.31 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 2 101627968 101627968 C T TBC1D8 Silent p.P939P 0.56 TCGA-06-5416-01 2 101635463 101635463 C A RPL31 Missense_Mutation p.S117Y 0.09 deleterious(0.03) benign(0.064) TCGA-06-5416-01 2 101652558 101652558 G A TBC1D8 Missense_Mutation p.R494C 0.55 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 2 10186539 10186539 C T KLF11 Missense_Mutation p.S102L 0.13 deleterious(0) possibly_damaging(0.685) TCGA-06-5416-01 2 10192408 10192408 C T KLF11 Missense_Mutation p.S438L 0.32 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 101971819 101971819 G A CREG2 Silent p.I207I 0.57 TCGA-06-5416-01 2 102448293 102448293 G T MAP4K4 Missense_Mutation p.D207Y 0.31 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 2 102456292 102456292 T G MAP4K4 Missense_Mutation p.F262C 0.54 deleterious_low_confidence(0.02) unknown(0) TCGA-06-5416-01 2 102456390 102456390 G T MAP4K4 Nonsense_Mutation p.E295* 0.22 TCGA-06-5416-01 2 102493513 102493513 G T MAP4K4 Missense_Mutation p.R952I 0.34 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 2 102793270 102793270 G A IL1R1 3'UTR 0.25 TCGA-06-5416-01 2 102851605 102851605 G A IL1RL2 Missense_Mutation p.D516N 0.23 tolerated(0.07) benign(0.109) TCGA-06-5416-01 2 102957144 102957144 G T IL1RL1 Nonsense_Mutation p.G156* 0.26 TCGA-06-5416-01 2 102968130 102968130 G A IL1RL1 Missense_Mutation p.D474N 0.29 tolerated(0.33) benign(0.208) TCGA-06-5416-01 2 103281725 103281725 G A SLC9A2 Missense_Mutation p.R307Q 0.31 tolerated(0.1) probably_damaging(0.999) TCGA-06-5416-01 2 103299826 103299826 G A SLC9A2 Missense_Mutation p.E371K 0.49 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 103318921 103318921 G A SLC9A2 Missense_Mutation p.R602Q 0.24 tolerated(0.21) probably_damaging(0.996) TCGA-06-5416-01 2 103321036 103321036 G A SLC9A2 Missense_Mutation p.D627N 0.69 tolerated(0.07) benign(0.154) TCGA-06-5416-01 2 105654601 105654601 T G MRPS9 Silent p.L17L 0.42 TCGA-06-5416-01 2 105665689 105665689 C T MRPS9 Missense_Mutation p.R66C 0.32 deleterious(0.03) benign(0.006) TCGA-06-5416-01 2 105665762 105665762 A G MRPS9 Missense_Mutation p.N90S 0.38 deleterious(0) possibly_damaging(0.885) TCGA-06-5416-01 2 10566962 10566962 G T HPCAL1 3'UTR 0.56 TCGA-06-5416-01 2 105716136 105716136 C A MRPS9 Missense_Mutation p.L370I 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 10581786 10581786 C T ODC1 Missense_Mutation p.D364N 0.58 deleterious(0.02) possibly_damaging(0.472) TCGA-06-5416-01 2 105858731 105858731 G A GPR45 Missense_Mutation p.R139H 0.28 tolerated(0.05) benign(0.118) TCGA-06-5416-01 2 105924279 105924279 G A TGFBRAP1 Silent p.I160I 0.27 TCGA-06-5416-01 2 105984100 105984100 G A FHL2 Missense_Mutation p.P143L 0.48 deleterious(0.02) benign(0.072) TCGA-06-5416-01 2 106013275 106013275 G A FHL2 Intron 0.28 TCGA-06-5416-01 2 106498028 106498028 C T NCK2 Silent p.I157I 0.18 TCGA-06-5416-01 2 10712116 10712116 C T NOL10 3'UTR 0.36 TCGA-06-5416-01 2 107446621 107446621 A C ST6GAL2 Missense_Mutation p.Y407D 0.29 probably_damaging(0.999) TCGA-06-5416-01 2 107460245 107460245 G A ST6GAL2 Silent p.G63G 0.30 TCGA-06-5416-01 2 108488464 108488464 T G RGPD4 Missense_Mutation p.F1335C 0.28 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 2 108627007 108627007 C T SLC5A7 Missense_Mutation p.P478L 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 108924811 108924811 C T SULT1C2 Missense_Mutation p.T272I 0.62 tolerated(1) benign(0.008) TCGA-06-5416-01 2 109003853 109003853 A G SULT1C4 Missense_Mutation p.T292A 0.29 tolerated(1) benign(0) TCGA-06-5416-01 2 109092051 109092051 C T GCC2 Missense_Mutation p.A974V 0.17 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 2 109092282 109092282 C A GCC2 Silent p.L1012L 0.27 TCGA-06-5416-01 2 10915138 10915138 G A ATP6V1C2 Missense_Mutation p.E256K 0.26 tolerated(0.12) benign(0.085) TCGA-06-5416-01 2 10923378 10923378 C A ATP6V1C2 Missense_Mutation p.L425I 0.28 tolerated(0.06) benign(0.21) TCGA-06-5416-01 2 10924462 10924462 G A ATP6V1C2 3'Flank 0.13 TCGA-06-5416-01 2 10929956 10929956 G A PDIA6 Silent p.D253D 0.27 TCGA-06-5416-01 2 109404503 109404503 T G CCDC138 Missense_Mutation p.F37V 0.26 tolerated_low_confidence(0.1) possibly_damaging(0.504) TCGA-06-5416-01 2 109411062 109411062 C A CCDC138 Missense_Mutation p.S154Y 0.27 tolerated(0.17) possibly_damaging(0.781) TCGA-06-5416-01 2 109463308 109463308 A G CCDC138 Missense_Mutation p.T480A 0.23 tolerated(0.16) benign(0) TCGA-06-5416-01 2 110053529 110053529 G A SH3RF3 Silent p.S585S 0.59 TCGA-06-5416-01 2 110065844 110065844 G A SH3RF3 Missense_Mutation p.A683T 0.52 tolerated(0.17) benign(0.029) TCGA-06-5416-01 2 110332273 110332273 C T SEPT10 Missense_Mutation p.R162H 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 2 11053430 11053430 G A KCNF1 Missense_Mutation p.R293Q 0.27 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 2 11053864 11053864 G T KCNF1 Missense_Mutation p.G438C 0.12 tolerated(0.07) benign(0.089) TCGA-06-5416-01 2 110922300 110922300 G A NPHP1 Missense_Mutation p.P246S 0.27 tolerated(1) benign(0) TCGA-06-5416-01 2 110927491 110927491 C A NPHP1 Missense_Mutation p.E138D 0.37 tolerated(0.51) benign(0.004) TCGA-06-5416-01 2 111144799 111144799 C T LINC01106 5'Flank 0.16 TCGA-06-5416-01 2 111397317 111397317 A G BUB1 Splice_Site p.X1021_splice 0.49 TCGA-06-5416-01 2 111415141 111415141 C T BUB1 Missense_Mutation p.G533E 0.35 tolerated(0.79) probably_damaging(1) TCGA-06-5416-01 2 111562850 111562850 G A ACOXL Missense_Mutation p.V211M 0.31 deleterious(0.01) possibly_damaging(0.467) TCGA-06-5416-01 2 111721204 111721204 T C ACOXL Intron 0.58 TCGA-06-5416-01 2 112620089 112620089 C A ANAPC1 Missense_Mutation p.R380I 0.17 tolerated(0.23) possibly_damaging(0.584) TCGA-06-5416-01 2 112779111 112779111 G A MERTK Missense_Mutation p.A768T 0.59 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 113012503 113012503 G A ZC3H8 Missense_Mutation p.A19V 0.11 tolerated_low_confidence(0.22) benign(0.003) TCGA-06-5416-01 2 113067569 113067569 C T ZC3H6 Silent p.F148F 0.39 TCGA-06-5416-01 2 113074151 113074151 G A ZC3H6 Silent p.G284G 0.23 TCGA-06-5416-01 2 113089154 113089154 G A ZC3H6 Missense_Mutation p.V887I 0.26 tolerated(0.28) probably_damaging(0.99) TCGA-06-5416-01 2 113146018 113146018 C A RGPD8 Nonsense_Mutation p.E1502* 0.88 TCGA-06-5416-01 2 113147060 113147060 C T RGPD8 Silent p.E1154E 0.14 TCGA-06-5416-01 2 113147709 113147709 T A RGPD8 Missense_Mutation p.K938M 0.11 deleterious(0.03) possibly_damaging(0.781) TCGA-06-5416-01 2 113346315 113346315 T C CHCHD5 Intron 0.23 TCGA-06-5416-01 2 113404703 113404703 G T SLC20A1 Missense_Mutation p.G100W 0.19 deleterious(0.01) possibly_damaging(0.755) TCGA-06-5416-01 2 113496454 113496454 G A CKAP2L Silent p.F728F 0.27 TCGA-06-5416-01 2 113765584 113765584 C A IL36A Missense_Mutation p.A147D 0.30 deleterious(0.05) benign(0.091) TCGA-06-5416-01 2 113783739 113783739 T C IL36B Missense_Mutation p.N111S 0.39 deleterious_low_confidence(0) possibly_damaging(0.801) TCGA-06-5416-01 2 113786629 113786629 C T IL36B Missense_Mutation p.D50N 0.27 tolerated_low_confidence(0.15) benign(0.14) TCGA-06-5416-01 2 113940544 113940544 G A PSD4 Missense_Mutation p.E171K 0.21 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-06-5416-01 2 114002034 114002034 T C PAX8 Missense_Mutation p.D120G 0.60 deleterious(0.02) probably_damaging(0.91) TCGA-06-5416-01 2 114251339 114251339 T G CBWD2 Missense_Mutation p.I274M 0.29 deleterious(0.01) possibly_damaging(0.497) TCGA-06-5416-01 2 114492191 114492191 G T SLC35F5 Missense_Mutation p.L298I 0.52 tolerated(0.24) benign(0.401) TCGA-06-5416-01 2 114670780 114670780 G T ACTR3 Nonsense_Mutation p.E26* 0.53 TCGA-06-5416-01 2 114685015 114685015 G A ACTR3 Missense_Mutation p.D107N 0.28 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 2 11586592 11586592 C A E2F6 3'UTR 0.24 TCGA-06-5416-01 2 11593743 11593743 G A E2F6 Silent p.L115L 0.29 TCGA-06-5416-01 2 11593806 11593806 C T E2F6 Silent p.T94T 0.57 TCGA-06-5416-01 2 116066822 116066822 G A DPP10 Missense_Mutation p.G27E 0.22 tolerated(0.09) possibly_damaging(0.726) TCGA-06-5416-01 2 116538475 116538475 C T DPP10 Missense_Mutation p.R467C 0.29 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 2 11718516 11718516 C A GREB1 Missense_Mutation p.P244H 0.31 deleterious(0.01) possibly_damaging(0.779) TCGA-06-5416-01 2 118709964 118709964 C T CCDC93 Silent p.K351K 0.44 TCGA-06-5416-01 2 118743626 118743626 C T CCDC93 Missense_Mutation p.R180Q 0.26 deleterious(0.03) probably_damaging(0.993) TCGA-06-5416-01 2 11907958 11907958 T G LPIN1 Missense_Mutation p.F137V 0.30 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 11944673 11944673 C A LPIN1 Missense_Mutation p.S762Y 0.25 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 2 11960640 11960640 C T LPIN1 Missense_Mutation p.S923L 0.23 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 2 119988611 119988611 G A STEAP3 Splice_Site p.X8_splice 0.29 TCGA-06-5416-01 2 120003376 120003376 C A STEAP3 Missense_Mutation p.L112I 0.52 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 2 120252108 120252108 C T SCTR Missense_Mutation p.R30Q 0.56 tolerated(0.5) benign(0.012) TCGA-06-5416-01 2 120362527 120362527 G T PCDP1 Nonsense_Mutation p.E330* 0.50 TCGA-06-5416-01 2 120383160 120383160 T C PCDP1 Missense_Mutation p.V471A 0.39 tolerated(0.05) possibly_damaging(0.499) TCGA-06-5416-01 2 120387462 120387462 C T PCDP1 Silent p.G554G 0.31 TCGA-06-5416-01 2 120438610 120438610 C T TMEM177 Silent p.L61L 0.22 TCGA-06-5416-01 2 120643393 120643393 G T PTPN4 Nonsense_Mutation p.E204* 0.16 TCGA-06-5416-01 2 120723212 120723212 T G PTPN4 Missense_Mutation p.V850G 0.52 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 2 120776796 120776796 C T EPB41L5 Missense_Mutation p.R46W 0.05 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 121043651 121043651 G A RALB Missense_Mutation p.E106K 0.57 tolerated(0.27) possibly_damaging(0.561) TCGA-06-5416-01 2 121104121 121104121 C T INHBB Silent p.G119G 0.61 TCGA-06-5416-01 2 121107446 121107446 C T INHBB Missense_Mutation p.A407V 0.30 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 121684968 121684968 G A GLI2 Silent p.A60A 0.23 TCGA-06-5416-01 2 121740398 121740398 A C GLI2 Missense_Mutation p.K542T 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 121745842 121745842 G A GLI2 Silent p.P784P 0.21 TCGA-06-5416-01 2 121746943 121746943 C T GLI2 Silent p.S1151S 0.34 TCGA-06-5416-01 2 121747564 121747564 G A GLI2 Silent p.P1358P 0.28 TCGA-06-5416-01 2 121747761 121747761 T C GLI2 Missense_Mutation p.M1424T 0.31 tolerated_low_confidence(0.22) benign(0) TCGA-06-5416-01 2 121747923 121747923 C T GLI2 Missense_Mutation p.A1478V 0.55 tolerated(0.06) benign(0.054) TCGA-06-5416-01 2 121748379 121748379 G A GLI2 3'UTR 0.27 TCGA-06-5416-01 2 121991697 121991697 G A TFCP2L1 Missense_Mutation p.R390W 0.58 deleterious(0.03) benign(0.002) TCGA-06-5416-01 2 122005764 122005764 C T TFCP2L1 Silent p.A160A 0.35 TCGA-06-5416-01 2 122155949 122155949 A G CLASP1 Silent p.F976F 0.21 TCGA-06-5416-01 2 122205854 122205854 C T CLASP1 Missense_Mutation p.R580K 0.28 tolerated(0.12) benign(0.005) TCGA-06-5416-01 2 122522874 122522874 G T TSN Missense_Mutation p.E206D 0.06 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 122523049 122523049 G A TSN 3'UTR 0.47 TCGA-06-5416-01 2 125204484 125204484 C T CNTNAP5 Silent p.G296G 0.27 TCGA-06-5416-01 2 125405345 125405345 C A CNTNAP5 Silent p.I628I 0.24 TCGA-06-5416-01 2 125671780 125671780 A G CNTNAP5 Missense_Mutation p.Y1279C 0.51 tolerated(0.07) probably_damaging(0.968) TCGA-06-5416-01 2 127808390 127808390 A G BIN1 Silent p.G520G 0.56 TCGA-06-5416-01 2 127819721 127819721 C T BIN1 Missense_Mutation p.S276N 0.47 tolerated(0.19) benign(0.25) TCGA-06-5416-01 2 127944867 127944867 G A CYP27C1 Nonsense_Mutation p.R367* 0.20 TCGA-06-5416-01 2 127958827 127958827 C A CYP27C1 Missense_Mutation p.A87S 0.19 tolerated(0.75) probably_damaging(0.978) TCGA-06-5416-01 2 128044485 128044485 T G ERCC3 Missense_Mutation p.K379T 0.24 tolerated(0.28) possibly_damaging(0.904) TCGA-06-5416-01 2 128178897 128178897 C A PROC Missense_Mutation p.L37M 0.31 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 128183682 128183682 C T PROC Missense_Mutation p.P186L 0.45 tolerated(0.57) benign(0.001) TCGA-06-5416-01 2 128186210 128186210 C T PROC Silent p.F358F 0.29 TCGA-06-5416-01 2 128263099 128263099 T G IWS1 Missense_Mutation p.K127T 0.31 deleterious_low_confidence(0.02) benign(0.358) TCGA-06-5416-01 2 128388919 128388919 C T MYO7B Silent p.I1666I 0.28 TCGA-06-5416-01 2 128389921 128389921 C T MYO7B Missense_Mutation p.R1758W 0.54 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 2 128393812 128393812 G T MYO7B Missense_Mutation p.K1986N 0.46 tolerated(0.09) benign(0.243) TCGA-06-5416-01 2 128878797 128878797 G A UGGT1 Missense_Mutation p.R333Q 0.61 tolerated(0.4) benign(0.324) TCGA-06-5416-01 2 128922311 128922311 G A UGGT1 Missense_Mutation p.D945N 0.28 tolerated(0.05) possibly_damaging(0.694) TCGA-06-5416-01 2 130681180 130681180 C T AC079776.3 Intron 0.18 TCGA-06-5416-01 2 130791937 130791937 A G FAR2P1 5'Flank 0.38 TCGA-06-5416-01 2 130832693 130832693 C A POTEF Missense_Mutation p.K784N 0.05 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-06-5416-01 2 130843547 130843547 C T POTEF Missense_Mutation p.E540K 0.90 deleterious_low_confidence(0) benign(0.068) TCGA-06-5416-01 2 130877836 130877836 C A POTEF Missense_Mutation p.D85Y 0.48 deleterious_low_confidence(0.03) benign(0.041) TCGA-06-5416-01 2 130877958 130877958 C T POTEF Missense_Mutation p.G44D 0.22 deleterious_low_confidence(0) probably_damaging(0.922) TCGA-06-5416-01 2 130897828 130897828 C T CCDC74B Missense_Mutation p.R267Q 0.29 tolerated(0.08) possibly_damaging(0.742) TCGA-06-5416-01 2 131099253 131099253 C T CCDC115 Silent p.G95G 0.42 TCGA-06-5416-01 2 131487439 131487439 T G GPR148 Missense_Mutation p.F239V 0.28 deleterious(0.01) benign(0.433) TCGA-06-5416-01 2 131797987 131797987 G A ARHGEF4 Missense_Mutation p.E360K 0.33 deleterious(0.02) possibly_damaging(0.831) TCGA-06-5416-01 2 131904223 131904223 G A PLEKHB2 Silent p.Q190Q 0.32 TCGA-06-5416-01 2 131904261 131904261 G A PLEKHB2 Missense_Mutation p.R203Q 0.33 tolerated(0.08) benign(0.005) TCGA-06-5416-01 2 131904491 131904491 C T PLEKHB2 3'UTR 0.35 TCGA-06-5416-01 2 132021110 132021110 A G POTEE Silent p.L694L 0.24 TCGA-06-5416-01 2 132277672 132277672 C T AC093838.4 Intron 0.23 TCGA-06-5416-01 2 132290859 132290859 C T CCDC74A Missense_Mutation p.A342V 0.13 deleterious(0.03) possibly_damaging(0.616) TCGA-06-5416-01 2 135596223 135596223 T G ACMSD 5'UTR 0.35 TCGA-06-5416-01 2 135602804 135602804 G T ACMSD Missense_Mutation p.R20M 0.26 deleterious(0) benign(0.246) TCGA-06-5416-01 2 135696634 135696634 T C CCNT2 Splice_Site p.X144_splice 0.19 TCGA-06-5416-01 2 135711351 135711351 G T CCNT2 Missense_Mutation p.K442N 0.24 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 2 135745224 135745224 C A MAP3K19 Missense_Mutation p.Q406H 0.56 tolerated(0.06) benign(0.01) TCGA-06-5416-01 2 135749144 135749144 G A MAP3K19 Missense_Mutation p.S194L 0.07 deleterious(0.01) possibly_damaging(0.862) TCGA-06-5416-01 2 135756553 135756553 G A MAP3K19 Missense_Mutation p.S110L 0.30 tolerated(0.51) benign(0.009) TCGA-06-5416-01 2 135881803 135881803 G A RAB3GAP1 Missense_Mutation p.E273K 0.22 deleterious(0.02) probably_damaging(0.956) TCGA-06-5416-01 2 135883788 135883788 G A RAB3GAP1 Missense_Mutation p.E290K 0.48 deleterious(0.01) probably_damaging(0.973) TCGA-06-5416-01 2 135988342 135988342 G A ZRANB3 Silent p.I565I 0.54 TCGA-06-5416-01 2 136362409 136362409 T A R3HDM1 5'UTR 0.26 TCGA-06-5416-01 2 136389439 136389439 G A R3HDM1 Missense_Mutation p.R189H 0.57 tolerated(0.11) probably_damaging(0.971) TCGA-06-5416-01 2 136528283 136528283 G A UBXN4 Missense_Mutation p.R267H 0.16 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 2 136540359 136540359 G A UBXN4 Missense_Mutation p.D477N 0.34 deleterious(0.02) benign(0.068) TCGA-06-5416-01 2 136545955 136545955 C T LCT Missense_Mutation p.R1908H 0.27 tolerated_low_confidence(0.57) benign(0.001) TCGA-06-5416-01 2 136562471 136562471 C T LCT Missense_Mutation p.V1444M 0.34 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 136566430 136566430 C A LCT Missense_Mutation p.D1163Y 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 136570331 136570331 C T LCT Missense_Mutation p.V635I 0.23 tolerated(1) benign(0.001) TCGA-06-5416-01 2 136570465 136570465 C T LCT Missense_Mutation p.R590H 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 136594269 136594269 G A LCT Silent p.F157F 0.29 TCGA-06-5416-01 2 136594307 136594307 C T LCT Missense_Mutation p.E145K 0.32 tolerated(0.4) benign(0.009) TCGA-06-5416-01 2 136594308 136594308 G A LCT Silent p.T144T 0.26 TCGA-06-5416-01 2 138414678 138414678 C T THSD7B Silent p.N1444N 0.22 TCGA-06-5416-01 2 139310174 139310174 A T SPOPL Nonsense_Mutation p.K135* 0.59 TCGA-06-5416-01 2 139428831 139428831 G A NXPH2 Silent p.G152G 0.23 TCGA-06-5416-01 2 140992404 140992404 G A LRP1B Missense_Mutation p.A4537V 0.31 benign(0.004) TCGA-06-5416-01 2 141079629 141079629 G A LRP1B Silent p.C4181C 0.29 TCGA-06-5416-01 2 141272338 141272338 G A LRP1B Missense_Mutation p.S2718F 0.28 possibly_damaging(0.788) TCGA-06-5416-01 2 141607771 141607771 G A LRP1B Silent p.F1613F 0.29 TCGA-06-5416-01 2 143643070 143643070 G A KYNU Missense_Mutation p.C45Y 0.27 tolerated(0.61) benign(0.001) TCGA-06-5416-01 2 143676221 143676221 C A KYNU Missense_Mutation p.F71L 0.30 tolerated(1) benign(0.02) TCGA-06-5416-01 2 145156559 145156559 G T ZEB2 Missense_Mutation p.P732H 0.23 deleterious(0) possibly_damaging(0.533) TCGA-06-5416-01 2 145156671 145156671 G A ZEB2 Nonsense_Mutation p.R695* 0.56 TCGA-06-5416-01 2 148680611 148680611 T G ACVR2A Missense_Mutation p.L383V 0.34 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 149679727 149679727 G A KIF5C Missense_Mutation p.D50N 0.34 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 151326711 151326711 G A RND3 Silent p.I175I 0.30 TCGA-06-5416-01 2 151343843 151343843 C T RND3 Missense_Mutation p.G30E 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 151343951 151343951 C T RND3 5'UTR 0.27 TCGA-06-5416-01 2 152107961 152107961 C A RBM43 Missense_Mutation p.R178I 0.26 tolerated(0.06) benign(0.269) TCGA-06-5416-01 2 152314405 152314405 G A RIF1 Missense_Mutation p.R928Q 0.28 deleterious(0.02) possibly_damaging(0.465) TCGA-06-5416-01 2 152322536 152322536 C T RIF1 Missense_Mutation p.R2168C 0.66 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 152362683 152362683 G T NEB Missense_Mutation p.S7882R 0.26 probably_damaging(0.936) TCGA-06-5416-01 2 152410001 152410001 C A NEB Missense_Mutation p.D6548Y 0.50 probably_damaging(1) TCGA-06-5416-01 2 152423764 152423764 C T NEB Missense_Mutation p.R6025H 0.31 probably_damaging(0.999) TCGA-06-5416-01 2 152423865 152423865 C A NEB Missense_Mutation p.E5991D 0.29 benign(0.331) TCGA-06-5416-01 2 152432287 152432287 C A NEB Missense_Mutation p.K5645N 0.24 benign(0.057) TCGA-06-5416-01 2 152496387 152496387 G A NEB Missense_Mutation p.A2958V 0.26 possibly_damaging(0.47) TCGA-06-5416-01 2 152496519 152496519 C T NEB Missense_Mutation p.G2914D 0.28 probably_damaging(0.993) TCGA-06-5416-01 2 152500622 152500622 G A NEB Missense_Mutation p.R2556C 0.27 probably_damaging(0.998) TCGA-06-5416-01 2 152514563 152514563 G A NEB Silent p.G2039G 0.65 TCGA-06-5416-01 2 152514605 152514605 C A NEB Splice_Site p.X2026_splice 0.29 TCGA-06-5416-01 2 153493008 153493008 G T FMNL2 Missense_Mutation p.E916D 0.28 benign(0.388) TCGA-06-5416-01 2 153520464 153520464 G T PRPF40A Missense_Mutation p.L633I 0.56 deleterious(0) possibly_damaging(0.694) TCGA-06-5416-01 2 153572525 153572525 C T PRPF40A Missense_Mutation p.G67E 0.23 tolerated(0.24) probably_damaging(0.986) TCGA-06-5416-01 2 15519809 15519809 C A NBAS Missense_Mutation p.K1169N 0.54 tolerated(0.12) possibly_damaging(0.456) TCGA-06-5416-01 2 155555784 155555784 C T KCNJ3 Missense_Mutation p.S166F 0.62 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 15607469 15607469 C T NBAS Missense_Mutation p.R694Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 158181973 158181973 C A ERMN Missense_Mutation p.R74I 0.23 tolerated(0.13) benign(0.009) TCGA-06-5416-01 2 158182125 158182125 C A ERMN Missense_Mutation p.Q23H 0.29 tolerated(0.3) possibly_damaging(0.735) TCGA-06-5416-01 2 158406835 158406835 C T ACVR1C Missense_Mutation p.R205K 0.53 deleterious(0.03) benign(0.021) TCGA-06-5416-01 2 158617449 158617449 C T ACVR1 Missense_Mutation p.D403N 0.50 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 158630602 158630602 A G ACVR1 Missense_Mutation p.V214A 0.51 deleterious(0.02) possibly_damaging(0.892) TCGA-06-5416-01 2 159537101 159537101 C T PKP4 Missense_Mutation p.S1164L 0.29 deleterious(0) benign(0.368) TCGA-06-5416-01 2 159922480 159922480 G T TANC1 Missense_Mutation p.A20S 0.19 tolerated_low_confidence(1) benign(0.001) TCGA-06-5416-01 2 160027061 160027061 G T TANC1 Missense_Mutation p.D366Y 0.61 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 2 160031536 160031536 G A TANC1 Missense_Mutation p.A526T 0.04 deleterious(0) probably_damaging(0.948) TCGA-06-5416-01 2 160114277 160114277 A C WDSUB1 Missense_Mutation p.L315R 0.23 tolerated(0.57) benign(0.043) TCGA-06-5416-01 2 160206493 160206493 T C BAZ2B Missense_Mutation p.N1530S 0.33 benign(0) TCGA-06-5416-01 2 160229628 160229628 G A BAZ2B Missense_Mutation p.R1381C 0.62 probably_damaging(0.999) TCGA-06-5416-01 2 160229652 160229652 G A BAZ2B Missense_Mutation p.R1373C 0.23 probably_damaging(0.999) TCGA-06-5416-01 2 160284543 160284543 C A BAZ2B Missense_Mutation p.R792I 0.26 probably_damaging(0.998) TCGA-06-5416-01 2 160294904 160294904 G A BAZ2B Silent p.L401L 0.59 TCGA-06-5416-01 2 160335143 160335143 A C BAZ2B Missense_Mutation p.S30A 0.29 benign(0.097) TCGA-06-5416-01 2 160605063 160605063 C T MARCH7 Missense_Mutation p.S421F 0.33 deleterious(0.05) possibly_damaging(0.677) TCGA-06-5416-01 2 160708789 160708789 A C LY75-CD302 Missense_Mutation p.S936A 0.54 deleterious(0) possibly_damaging(0.817) TCGA-06-5416-01 2 160732074 160732074 C T LY75-CD302 Missense_Mutation p.A619T 0.33 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 2 160734873 160734873 C T LY75-CD302 Missense_Mutation p.R579Q 0.29 tolerated(0.76) benign(0.002) TCGA-06-5416-01 2 160824146 160824146 G A PLA2R1 Silent p.I936I 0.25 TCGA-06-5416-01 2 16086281 16086281 A G MYCN 3'UTR 0.19 TCGA-06-5416-01 2 160964258 160964258 C T ITGB6 Missense_Mutation p.V734M 0.29 tolerated(0.14) probably_damaging(0.982) TCGA-06-5416-01 2 160964350 160964350 G A ITGB6 Missense_Mutation p.P703L 0.29 deleterious(0.02) benign(0.159) TCGA-06-5416-01 2 160994659 160994659 T G ITGB6 Missense_Mutation p.N387H 0.58 tolerated(0.16) benign(0.012) TCGA-06-5416-01 2 162265397 162265397 A G PSMD14 Missense_Mutation p.N274S 0.29 tolerated(0.19) possibly_damaging(0.515) TCGA-06-5416-01 2 162273193 162273193 C A TBR1 Missense_Mutation p.S91Y 0.05 deleterious(0) probably_damaging(0.962) TCGA-06-5416-01 2 162280158 162280158 A G TBR1 Missense_Mutation p.N490S 0.33 tolerated(0.98) benign(0.001) TCGA-06-5416-01 2 162696375 162696375 C T SLC4A10 Silent p.F118F 0.31 TCGA-06-5416-01 2 162762244 162762244 C T SLC4A10 Missense_Mutation p.S615F 0.27 tolerated(0.34) probably_damaging(0.95) TCGA-06-5416-01 2 163133306 163133306 T C IFIH1 Missense_Mutation p.Y732C 0.27 tolerated(0.16) benign(0.003) TCGA-06-5416-01 2 163361012 163361012 T C KCNH7 Missense_Mutation p.T357A 0.56 tolerated(0.22) benign(0.002) TCGA-06-5416-01 2 164466470 164466470 G A FIGN Silent p.I624I 0.54 TCGA-06-5416-01 2 164466633 164466633 G T FIGN Missense_Mutation p.S570Y 0.21 deleterious(0.02) probably_damaging(0.977) TCGA-06-5416-01 2 164468066 164468066 C T FIGN Silent p.S92S 0.59 TCGA-06-5416-01 2 1652209 1652209 C T PXDN Missense_Mutation p.D1115N 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 1652855 1652855 C T PXDN Silent p.P899P 0.23 TCGA-06-5416-01 2 165551346 165551346 T G COBLL1 Missense_Mutation p.K890N 0.28 deleterious(0.01) possibly_damaging(0.894) TCGA-06-5416-01 2 165600285 165600285 C A COBLL1 Nonsense_Mutation p.E48* 0.28 TCGA-06-5416-01 2 165754904 165754904 T - SLC38A11 3'UTR 0.20 TCGA-06-5416-01 2 165755090 165755090 C A SLC38A11 Missense_Mutation p.A360S 0.20 tolerated(0.17) benign(0.259) TCGA-06-5416-01 2 165970458 165970458 G T SCN3A Missense_Mutation p.F1179L 0.22 deleterious(0) benign(0.138) TCGA-06-5416-01 2 166003368 166003368 C A SCN3A Nonsense_Mutation p.G518* 0.24 TCGA-06-5416-01 2 166170528 166170528 G T SCN2A Missense_Mutation p.Q431H 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 166894529 166894529 G A SCN1A Silent p.V901V 0.32 TCGA-06-5416-01 2 167056254 167056254 G A SCN9A Missense_Mutation p.T1621M 0.31 deleterious(0.02) probably_damaging(0.992) TCGA-06-5416-01 2 167060570 167060570 G T SCN9A Missense_Mutation p.L1546I 0.27 tolerated(1) benign(0.358) TCGA-06-5416-01 2 167162386 167162386 A G SCN9A Missense_Mutation p.I171T 0.23 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 2 167262041 167262041 A G SCN7A 3'UTR 0.55 TCGA-06-5416-01 2 167262645 167262645 A T SCN7A Missense_Mutation p.F1498L 0.62 tolerated(0.17) benign(0.17) TCGA-06-5416-01 2 167262789 167262789 G A SCN7A Silent p.D1450D 0.29 TCGA-06-5416-01 2 167298207 167298207 G T SCN7A Missense_Mutation p.S619Y 0.29 deleterious(0) possibly_damaging(0.447) TCGA-06-5416-01 2 16736387 16736387 A C FAM49A Silent p.V286V 0.29 TCGA-06-5416-01 2 16743295 16743295 G A FAM49A Missense_Mutation p.T138I 0.26 tolerated(0.1) probably_damaging(0.973) TCGA-06-5416-01 2 16743311 16743311 C T FAM49A Missense_Mutation p.E133K 0.26 tolerated(0.06) probably_damaging(0.909) TCGA-06-5416-01 2 167760070 167760070 T C XIRP2 Silent p.C26C 0.26 TCGA-06-5416-01 2 168074699 168074699 C T XIRP2 Silent p.C249C 0.53 TCGA-06-5416-01 2 168102392 168102392 G A XIRP2 Missense_Mutation p.R1497Q 0.27 benign(0) TCGA-06-5416-01 2 168103677 168103677 A G XIRP2 Silent p.S1925S 0.49 TCGA-06-5416-01 2 168104053 168104053 C T XIRP2 Missense_Mutation p.H2051Y 0.18 benign(0.015) TCGA-06-5416-01 2 168104672 168104672 C T XIRP2 Missense_Mutation p.T2257I 0.30 possibly_damaging(0.721) TCGA-06-5416-01 2 168107566 168107566 C T XIRP2 Missense_Mutation p.R3222C 0.23 probably_damaging(1) TCGA-06-5416-01 2 168107935 168107935 G A XIRP2 Missense_Mutation p.V3345I 0.27 benign(0.009) TCGA-06-5416-01 2 168108173 168108173 C T XIRP2 Missense_Mutation p.A3424V 0.54 possibly_damaging(0.687) TCGA-06-5416-01 2 169023914 169023914 C A STK39 Nonsense_Mutation p.E109* 0.23 TCGA-06-5416-01 2 169622204 169622204 C T CERS6 Silent p.C316C 0.27 TCGA-06-5416-01 2 169728030 169728030 C T SPC25 Missense_Mutation p.E196K 0.29 deleterious(0.03) benign(0.067) TCGA-06-5416-01 2 169826657 169826657 G A ABCB11 Silent p.I569I 0.32 TCGA-06-5416-01 2 169939919 169939919 G T DHRS9 Nonsense_Mutation p.E132* 0.54 TCGA-06-5416-01 2 169995814 169995814 G A LRP2 Silent p.F4445F 0.31 TCGA-06-5416-01 2 170003318 170003318 C A LRP2 Missense_Mutation p.D4248Y 0.23 probably_damaging(1) TCGA-06-5416-01 2 170007487 170007487 G T LRP2 Missense_Mutation p.L4171I 0.21 probably_damaging(0.999) TCGA-06-5416-01 2 170055415 170055415 C T LRP2 Missense_Mutation p.R2820H 0.60 benign(0.146) TCGA-06-5416-01 2 170060681 170060681 A G LRP2 Missense_Mutation p.Y2606H 0.23 probably_damaging(0.993) TCGA-06-5416-01 2 170092538 170092538 G A LRP2 Missense_Mutation p.R1578C 0.39 probably_damaging(1) TCGA-06-5416-01 2 170097846 170097846 C A LRP2 Missense_Mutation p.D1233Y 0.25 probably_damaging(0.987) TCGA-06-5416-01 2 170134324 170134324 G A LRP2 Missense_Mutation p.S568L 0.34 benign(0.004) TCGA-06-5416-01 2 170147367 170147367 C T LRP2 Missense_Mutation p.G304R 0.34 benign(0.077) TCGA-06-5416-01 2 170386305 170386305 A G FASTKD1 3'UTR 0.63 TCGA-06-5416-01 2 170419733 170419733 A G FASTKD1 Splice_Site p.X191_splice 0.25 TCGA-06-5416-01 2 170419812 170419812 C T FASTKD1 Silent p.Q165Q 0.26 TCGA-06-5416-01 2 170502282 170502282 A G CCDC173 3'UTR 0.25 TCGA-06-5416-01 2 170502602 170502602 C A CCDC173 Nonsense_Mutation p.E470* 0.26 TCGA-06-5416-01 2 170505831 170505831 C A CCDC173 Missense_Mutation p.R393I 0.43 deleterious(0.04) benign(0.208) TCGA-06-5416-01 2 170531226 170531226 G A CCDC173 Silent p.F174F 0.22 TCGA-06-5416-01 2 170537647 170537647 C A CCDC173 Missense_Mutation p.W55L 0.30 deleterious(0) probably_damaging(0.935) TCGA-06-5416-01 2 170557786 170557786 C T PHOSPHO2 Missense_Mutation p.S102L 0.34 deleterious(0.01) benign(0.352) TCGA-06-5416-01 2 170669010 170669010 C T METTL5 Missense_Mutation p.R183Q 0.06 deleterious(0.03) benign(0.039) TCGA-06-5416-01 2 170936478 170936478 T G UBR3 Missense_Mutation p.F1785C 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 2 171238549 171238549 G T MYO3B Missense_Mutation p.R332I 0.27 deleterious(0) possibly_damaging(0.522) TCGA-06-5416-01 2 171238623 171238623 G A MYO3B Splice_Site p.X356_splice 0.24 TCGA-06-5416-01 2 171573150 171573150 G A SP5 Missense_Mutation p.A145T 0.45 tolerated(0.5) possibly_damaging(0.499) TCGA-06-5416-01 2 171704246 171704246 C T GAD1 Missense_Mutation p.P355S 0.55 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 172016916 172016916 C T TLK1 Missense_Mutation p.G8E 0.28 deleterious_low_confidence(0) benign(0.041) TCGA-06-5416-01 2 172669889 172669889 C A SLC25A12 Missense_Mutation p.K377N 0.30 deleterious(0.01) possibly_damaging(0.783) TCGA-06-5416-01 2 172821918 172821918 G A HAT1 Silent p.T123T 0.34 TCGA-06-5416-01 2 172926312 172926312 C T METAP1D Missense_Mutation p.R43W 0.26 tolerated(0.16) benign(0) TCGA-06-5416-01 2 172950374 172950374 G T DLX1 5'UTR 0.30 TCGA-06-5416-01 2 172951570 172951570 A G DLX1 Missense_Mutation p.T168A 0.27 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 2 173339706 173339706 G T ITGA6 Nonsense_Mutation p.E346* 0.17 TCGA-06-5416-01 2 173366607 173366607 G T ITGA6 Intron 0.28 TCGA-06-5416-01 2 173832031 173832031 G A RAPGEF4 Missense_Mutation p.R288Q 0.24 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 2 173850192 173850192 T G RAPGEF4 Missense_Mutation p.F374C 0.26 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 2 174074513 174074513 G A MLTK Silent p.T267T 0.50 TCGA-06-5416-01 2 175087826 175087826 C T OLA1 Missense_Mutation p.G103E 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 175976380 175976380 G A ATF2 Silent p.L248L 0.54 TCGA-06-5416-01 2 176812409 176812409 G A KIAA1715 Nonsense_Mutation p.R169* 0.36 TCGA-06-5416-01 2 17692070 17692070 G A RAD51AP2 3'UTR 0.72 TCGA-06-5416-01 2 176946993 176946993 C T EVX2 Silent p.E204E 0.34 TCGA-06-5416-01 2 176959304 176959304 A G HOXD13 Missense_Mutation p.N293S 0.32 tolerated(0.06) benign(0.103) TCGA-06-5416-01 2 176972155 176972155 C T HOXD11 Silent p.A24A 0.27 TCGA-06-5416-01 2 176982233 176982233 C T HOXD10 Silent p.G224G 0.64 TCGA-06-5416-01 2 176983856 176983856 A G HOXD10 Missense_Mutation p.D307G 0.54 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 2 17698432 17698432 C A RAD51AP2 Missense_Mutation p.K417N 0.26 deleterious(0.01) possibly_damaging(0.711) TCGA-06-5416-01 2 17699379 17699379 G T RAD51AP2 Missense_Mutation p.L102M 0.62 tolerated(0.17) possibly_damaging(0.66) TCGA-06-5416-01 2 177036449 177036449 A G HOXD3 Missense_Mutation p.Y249C 0.31 deleterious(0) benign(0.001) TCGA-06-5416-01 2 177135044 177135044 G A MTX2 Intron 0.36 TCGA-06-5416-01 2 178095644 178095644 C T NFE2L2 Missense_Mutation p.E563K 0.28 deleterious(0.01) benign(0.081) TCGA-06-5416-01 2 178096161 178096161 C T NFE2L2 Silent p.Q390Q 0.34 TCGA-06-5416-01 2 178415691 178415691 T C TTC30B Missense_Mutation p.T601A 0.54 deleterious(0.02) benign(0.007) TCGA-06-5416-01 2 178416794 178416794 C T TTC30B Missense_Mutation p.G233D 0.28 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 2 178417056 178417056 C A TTC30B Nonsense_Mutation p.E146* 0.28 TCGA-06-5416-01 2 178481942 178481942 G A TTC30A Silent p.V496V 0.20 TCGA-06-5416-01 2 178482797 178482797 G A TTC30A Silent p.I211I 0.10 TCGA-06-5416-01 2 178879163 178879163 C T PDE11A Missense_Mutation p.D313N 0.27 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 2 178985060 178985060 C A RBM45 Silent p.S199S 0.25 TCGA-06-5416-01 2 179170911 179170911 G A OSBPL6 5'UTR 0.31 TCGA-06-5416-01 2 179197719 179197719 C T OSBPL6 Missense_Mutation p.S203F 0.48 deleterious(0.01) possibly_damaging(0.66) TCGA-06-5416-01 2 179306359 179306359 G A PRKRA Missense_Mutation p.S196F 0.08 deleterious(0.04) possibly_damaging(0.707) TCGA-06-5416-01 2 179318333 179318333 G A DFNB59 Missense_Mutation p.R66K 0.30 tolerated(1) benign(0.007) TCGA-06-5416-01 2 179358711 179358711 G A PLEKHA3 Missense_Mutation p.A149T 0.26 tolerated(0.62) benign(0) TCGA-06-5416-01 2 179393885 179393885 C A TTN Missense_Mutation p.Q35531H 0.35 TCGA-06-5416-01 2 179399267 179399267 C A TTN Missense_Mutation p.E34025D 0.31 TCGA-06-5416-01 2 179401251 179401251 G A TTN Missense_Mutation p.S33408F 0.25 TCGA-06-5416-01 2 179403402 179403402 G A TTN Missense_Mutation p.R33052C 0.25 TCGA-06-5416-01 2 179407043 179407043 G A TTN Silent p.F32480F 0.28 TCGA-06-5416-01 2 179408338 179408338 G T TTN Missense_Mutation p.S32121Y 0.23 TCGA-06-5416-01 2 179410959 179410959 G T TTN Missense_Mutation p.S31700Y 0.54 TCGA-06-5416-01 2 179412399 179412399 G A TTN Silent p.V31318V 0.20 TCGA-06-5416-01 2 179417760 179417760 G T TTN Missense_Mutation p.P29956H 0.31 TCGA-06-5416-01 2 179418855 179418855 G A TTN Silent p.G29661G 0.29 TCGA-06-5416-01 2 179424238 179424238 C A TTN Missense_Mutation p.G28874V 0.29 TCGA-06-5416-01 2 179433512 179433512 G A TTN Missense_Mutation p.R25783W 0.59 TCGA-06-5416-01 2 179436030 179436030 A C TTN Nonsense_Mutation p.Y24943* 0.34 TCGA-06-5416-01 2 179437012 179437012 C T TTN Missense_Mutation p.R24616Q 0.23 TCGA-06-5416-01 2 179439304 179439304 G T TTN Missense_Mutation p.S23852Y 0.23 TCGA-06-5416-01 2 179448493 179448493 G A TTN Missense_Mutation p.R21806W 0.64 TCGA-06-5416-01 2 179455005 179455005 G A TTN Missense_Mutation p.R20483C 0.55 TCGA-06-5416-01 2 179457604 179457604 G A TTN Missense_Mutation p.R19748W 0.27 TCGA-06-5416-01 2 179457732 179457732 C A TTN Missense_Mutation p.R19705L 0.29 TCGA-06-5416-01 2 179458196 179458196 G T TTN Missense_Mutation p.P19580H 0.59 TCGA-06-5416-01 2 179458866 179458866 A C TTN Silent p.V19418V 0.28 TCGA-06-5416-01 2 179462342 179462342 C T TTN Missense_Mutation p.S19156N 0.19 TCGA-06-5416-01 2 179462640 179462640 C A TTN Missense_Mutation p.R19086I 0.06 TCGA-06-5416-01 2 179464431 179464431 G T TTN Missense_Mutation p.L18733I 0.30 TCGA-06-5416-01 2 179466209 179466209 G A TTN Silent p.D18505D 0.32 TCGA-06-5416-01 2 179472267 179472267 G A TTN Silent p.D17716D 0.29 TCGA-06-5416-01 2 179485509 179485509 G A TTN Silent p.N15276N 0.29 TCGA-06-5416-01 2 179494084 179494084 C T TTN Missense_Mutation p.E14790K 0.35 TCGA-06-5416-01 2 179499334 179499334 C T TTN Silent p.V14058V 0.25 TCGA-06-5416-01 2 179499473 179499473 G A TTN Missense_Mutation p.T14043I 0.27 TCGA-06-5416-01 2 179499560 179499560 G A TTN Missense_Mutation p.A14014V 0.56 TCGA-06-5416-01 2 179500795 179500795 G A TTN Missense_Mutation p.R13835W 0.31 TCGA-06-5416-01 2 179501349 179501349 G A TTN Missense_Mutation p.S13702F 0.61 TCGA-06-5416-01 2 179505302 179505302 T C TTN Silent p.T13563T 0.26 TCGA-06-5416-01 2 179516258 179516258 C T TTN Missense_Mutation p.E13157K 0.07 TCGA-06-5416-01 2 179527763 179527763 C T TTN Silent p.P12240P 0.28 TCGA-06-5416-01 2 17953921 17953921 C T GEN1 Missense_Mutation p.R275C 0.28 deleterious(0.03) benign(0.052) TCGA-06-5416-01 2 179544080 179544080 G T TTN Missense_Mutation p.P11243H 0.36 TCGA-06-5416-01 2 179558686 179558686 G T TTN Missense_Mutation p.F10492L 0.25 TCGA-06-5416-01 2 179568878 179568878 G A TTN Silent p.I10073I 0.23 TCGA-06-5416-01 2 179571273 179571273 T G TTN Missense_Mutation p.E9776D 0.23 TCGA-06-5416-01 2 179574310 179574310 G T TTN Missense_Mutation p.S9579Y 0.25 TCGA-06-5416-01 2 179575537 179575537 G T TTN Missense_Mutation p.S9429R 0.28 TCGA-06-5416-01 2 179576707 179576707 C T TTN Missense_Mutation p.G9284R 0.23 TCGA-06-5416-01 2 179577515 179577515 G A TTN Silent p.F9079F 0.34 TCGA-06-5416-01 2 179578014 179578014 G T TTN Silent p.V8949V 0.17 TCGA-06-5416-01 2 179581898 179581898 G A TTN Silent p.G8521G 0.36 TCGA-06-5416-01 2 179585351 179585351 G T TTN Missense_Mutation p.A7713D 0.14 TCGA-06-5416-01 2 179587493 179587493 G A TTN Missense_Mutation p.A7378V 0.21 TCGA-06-5416-01 2 179588672 179588672 G A TTN Missense_Mutation p.S7105F 0.59 TCGA-06-5416-01 2 179592899 179592899 T C TTN Missense_Mutation p.Y6551C 0.22 TCGA-06-5416-01 2 179592942 179592942 A G TTN Missense_Mutation p.S6537P 0.27 TCGA-06-5416-01 2 179595508 179595508 G T TTN Missense_Mutation p.P5918T 0.19 TCGA-06-5416-01 2 179597238 179597238 G A TTN Missense_Mutation p.S5517L 0.29 TCGA-06-5416-01 2 179599168 179599168 G A TTN Missense_Mutation p.S5128F 0.55 TCGA-06-5416-01 2 179599257 179599257 G A TTN Silent p.V5098V 0.37 TCGA-06-5416-01 2 179604290 179604290 G T TTN Missense_Mutation p.A4557D 0.28 TCGA-06-5416-01 2 179604833 179604833 T C TTN Missense_Mutation p.D4376G 0.25 TCGA-06-5416-01 2 179605102 179605102 G A TTN Silent p.N4286N 0.30 TCGA-06-5416-01 2 179610536 179610536 C A TTN Intron 0.31 TCGA-06-5416-01 2 179611329 179611329 G A TTN Intron 0.26 TCGA-06-5416-01 2 179612804 179612804 G A TTN Intron 0.23 TCGA-06-5416-01 2 179613885 179613885 G A TTN Intron 0.58 TCGA-06-5416-01 2 179614259 179614259 G A TTN Intron 0.23 TCGA-06-5416-01 2 179615482 179615482 G T TTN Intron 0.26 TCGA-06-5416-01 2 179616097 179616097 A G TTN Intron 0.51 TCGA-06-5416-01 2 179616271 179616271 T A TTN Intron 0.27 TCGA-06-5416-01 2 17962213 17962213 C A GEN1 Silent p.S578S 0.49 TCGA-06-5416-01 2 1796235 1796235 A G MYT1L Missense_Mutation p.I1091T 0.38 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 2 17962570 17962570 T G GEN1 Silent p.T697T 0.23 TCGA-06-5416-01 2 179629264 179629264 G A TTN Silent p.L3326L 0.21 TCGA-06-5416-01 2 179631200 179631200 C T TTN Missense_Mutation p.R3204Q 0.54 TCGA-06-5416-01 2 17963282 17963282 T G GEN1 3'UTR 0.35 TCGA-06-5416-01 2 179637844 179637844 G T TTN Missense_Mutation p.T2616N 0.28 TCGA-06-5416-01 2 179640890 179640890 C T TTN Missense_Mutation p.D1901N 0.27 TCGA-06-5416-01 2 179642072 179642072 G A TTN Intron 0.28 TCGA-06-5416-01 2 179644176 179644176 G T TTN Missense_Mutation p.S1248Y 0.13 TCGA-06-5416-01 2 179647100 179647100 T C TTN Silent p.Q1073Q 0.30 TCGA-06-5416-01 2 179656817 179656817 T C TTN Silent p.K548K 0.26 TCGA-06-5416-01 2 179736886 179736886 C T CCDC141 Missense_Mutation p.A685T 0.21 tolerated(0.45) benign(0.002) TCGA-06-5416-01 2 180308072 180308072 G T ZNF385B Missense_Mutation p.L441I 0.18 tolerated(0.11) benign(0.232) TCGA-06-5416-01 2 182347377 182347377 C T ITGA4 Missense_Mutation p.S347L 0.30 tolerated(0.26) benign(0.003) TCGA-06-5416-01 2 182394289 182394289 A G ITGA4 Missense_Mutation p.M818V 0.33 tolerated(0.45) benign(0.015) TCGA-06-5416-01 2 182396414 182396414 A C ITGA4 Missense_Mutation p.N899H 0.55 tolerated(0.62) possibly_damaging(0.549) TCGA-06-5416-01 2 182423343 182423343 C T CERKL Missense_Mutation p.R283Q 0.57 tolerated(0.34) benign(0.001) TCGA-06-5416-01 2 183822277 183822277 C T NCKAP1 Silent p.K649K 0.25 TCGA-06-5416-01 2 183951819 183951819 G A DUSP19 Missense_Mutation p.D109N 0.28 tolerated(0.32) benign(0.043) TCGA-06-5416-01 2 183951855 183951855 C T DUSP19 Missense_Mutation p.P121S 0.56 deleterious(0) possibly_damaging(0.896) TCGA-06-5416-01 2 185802431 185802431 C T ZNF804A Nonsense_Mutation p.R770* 0.52 TCGA-06-5416-01 2 185803930 185803930 C A ZNF804A 3'UTR 0.50 TCGA-06-5416-01 2 186673345 186673345 G T FSIP2 Nonsense_Mutation p.E6527* 0.24 TCGA-06-5416-01 2 187514596 187514596 C T ITGAV Nonsense_Mutation p.R461* 0.56 TCGA-06-5416-01 2 18757599 18757599 C A NT5C1B Missense_Mutation p.D454Y 0.15 deleterious(0.01) probably_damaging(0.934) TCGA-06-5416-01 2 187627667 187627667 C A FAM171B 3'UTR 0.28 TCGA-06-5416-01 2 187627727 187627727 C T FAM171B 3'UTR 0.25 TCGA-06-5416-01 2 18766167 18766167 G A NT5C1B Silent p.S172S 0.61 TCGA-06-5416-01 2 188211048 188211048 G A CALCRL Missense_Mutation p.R417C 0.25 deleterious(0) possibly_damaging(0.899) TCGA-06-5416-01 2 189876606 189876606 T G COL3A1 3'UTR 0.33 TCGA-06-5416-01 2 189922047 189922047 C T COL5A2 Missense_Mutation p.R779K 0.24 unknown(0) TCGA-06-5416-01 2 189945717 189945717 C T COL5A2 Missense_Mutation p.R302Q 0.25 probably_damaging(0.957) TCGA-06-5416-01 2 190332264 190332264 C A WDR75 Missense_Mutation p.F506L 0.57 deleterious(0.01) possibly_damaging(0.643) TCGA-06-5416-01 2 190531565 190531565 A T ASNSD1 Missense_Mutation p.Y236F 0.27 tolerated(0.69) benign(0.002) TCGA-06-5416-01 2 190541334 190541334 C T ANKAR Missense_Mutation p.R40W 0.19 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 2 190541335 190541335 G A ANKAR Missense_Mutation p.R40Q 0.34 tolerated(0.05) benign(0.223) TCGA-06-5416-01 2 190719653 190719653 T G PMS1 Missense_Mutation p.V552G 0.58 deleterious(0) probably_damaging(0.935) TCGA-06-5416-01 2 190742050 190742050 A G PMS1 Missense_Mutation p.D896G 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 191235925 191235925 G A INPP1 Missense_Mutation p.D333N 0.36 tolerated(0.07) probably_damaging(1) TCGA-06-5416-01 2 191236179 191236179 C T INPP1 3'UTR 0.78 TCGA-06-5416-01 2 191301241 191301241 G T MFSD6 Missense_Mutation p.K162N 0.32 tolerated(0.12) benign(0.174) TCGA-06-5416-01 2 191353502 191353502 G T MFSD6 Nonsense_Mutation p.G584* 0.31 TCGA-06-5416-01 2 191523910 191523910 C T NAB1 Missense_Mutation p.A3V 0.26 tolerated(0.82) benign(0.006) TCGA-06-5416-01 2 191759947 191759947 G T GLS Missense_Mutation p.E152D 0.24 tolerated(0.19) benign(0) TCGA-06-5416-01 2 191818349 191818349 G A GLS Missense_Mutation p.R570Q 0.27 deleterious(0.04) benign(0.435) TCGA-06-5416-01 2 191894538 191894538 C A STAT4 3'UTR 0.27 TCGA-06-5416-01 2 191895740 191895740 C T STAT4 Silent p.A726A 0.29 TCGA-06-5416-01 2 191905872 191905872 G T STAT4 Silent p.G418G 0.33 TCGA-06-5416-01 2 191926531 191926531 G A STAT4 Nonsense_Mutation p.R320* 0.27 TCGA-06-5416-01 2 192228568 192228568 G A MYO1B Missense_Mutation p.G294S 0.29 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 2 192248017 192248017 G A MYO1B Nonsense_Mutation p.W434* 0.18 TCGA-06-5416-01 2 192256846 192256846 G T MYO1B Missense_Mutation p.E665D 0.31 tolerated(0.07) possibly_damaging(0.734) TCGA-06-5416-01 2 192700704 192700704 C T SDPR Missense_Mutation p.R408H 0.51 deleterious_low_confidence(0.02) benign(0.383) TCGA-06-5416-01 2 192701162 192701162 C T SDPR Missense_Mutation p.M255I 0.04 tolerated(0.12) probably_damaging(0.997) TCGA-06-5416-01 2 192711510 192711510 G A SDPR Missense_Mutation p.R48W 0.54 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 193056701 193056701 C A TMEFF2 Nonsense_Mutation p.E63* 0.24 TCGA-06-5416-01 2 19553048 19553048 C A OSR1 Missense_Mutation p.K173N 0.34 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 2 19553599 19553599 C A OSR1 5'UTR 0.19 TCGA-06-5416-01 2 196545640 196545640 C T SLC39A10 Missense_Mutation p.R292C 0.21 deleterious(0.03) benign(0.006) TCGA-06-5416-01 2 196605579 196605579 C A DNAH7 Nonsense_Mutation p.G3927* 0.26 TCGA-06-5416-01 2 196682554 196682554 C A DNAH7 Splice_Site p.X3098_splice 0.57 TCGA-06-5416-01 2 196729083 196729083 C A DNAH7 Missense_Mutation p.E2432D 0.22 tolerated(0.16) possibly_damaging(0.666) TCGA-06-5416-01 2 196738409 196738409 C T DNAH7 Missense_Mutation p.R2099Q 0.18 deleterious(0.01) probably_damaging(0.976) TCGA-06-5416-01 2 196750964 196750964 G T DNAH7 Silent p.V1813V 0.24 TCGA-06-5416-01 2 196912110 196912110 C A DNAH7 Nonsense_Mutation p.E122* 0.35 TCGA-06-5416-01 2 197002295 197002295 C T STK17B Missense_Mutation p.G332E 0.24 deleterious(0.05) probably_damaging(0.968) TCGA-06-5416-01 2 197084838 197084838 C T HECW2 Missense_Mutation p.E1445K 0.53 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 197629381 197629381 C T GTF3C3 Missense_Mutation p.R856Q 0.50 tolerated(0.12) benign(0.007) TCGA-06-5416-01 2 197706084 197706084 C A PGAP1 Missense_Mutation p.K881N 0.29 tolerated(0.06) benign(0.298) TCGA-06-5416-01 2 197755562 197755562 C T PGAP1 Missense_Mutation p.S388N 0.55 tolerated(0.66) benign(0.016) TCGA-06-5416-01 2 197860170 197860170 C T ANKRD44 Missense_Mutation p.A897T 0.20 deleterious(0) possibly_damaging(0.769) TCGA-06-5416-01 2 198265573 198265573 C T SF3B1 Missense_Mutation p.E862K 0.24 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 2 198353941 198353941 G T HSPD1 Missense_Mutation p.L334I 0.56 tolerated(0.13) benign(0.171) TCGA-06-5416-01 2 198480650 198480650 G A RFTN2 Silent p.F368F 0.55 TCGA-06-5416-01 2 198495944 198495944 G A RFTN2 Missense_Mutation p.A240V 0.35 tolerated(0.21) benign(0.003) TCGA-06-5416-01 2 198511352 198511352 G T RFTN2 Missense_Mutation p.L60M 0.47 tolerated(0.13) possibly_damaging(0.694) TCGA-06-5416-01 2 198949979 198949979 C A PLCL1 Silent p.R580R 0.21 TCGA-06-5416-01 2 198950106 198950106 G A PLCL1 Missense_Mutation p.R622H 0.28 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 2 200298075 200298075 G A SATB2 Missense_Mutation p.A111V 0.32 tolerated(0.11) possibly_damaging(0.754) TCGA-06-5416-01 2 200789806 200789806 C T C2orf69 Missense_Mutation p.R119C 0.23 tolerated(0.2) benign(0.004) TCGA-06-5416-01 2 201400861 201400861 C A SGOL2 Missense_Mutation p.S128Y 0.31 deleterious(0.02) probably_damaging(0.995) TCGA-06-5416-01 2 201436061 201436061 G T SGOL2 Missense_Mutation p.G331V 0.41 tolerated(0.11) benign(0.038) TCGA-06-5416-01 2 20145578 20145578 C A WDR35 Missense_Mutation p.R616I 0.22 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 2 201478598 201478598 C T AOX1 Missense_Mutation p.A507V 0.21 tolerated(0.08) probably_damaging(0.966) TCGA-06-5416-01 2 201776056 201776056 C A ORC2 Missense_Mutation p.D568Y 0.40 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 2 20178511 20178511 C T WDR35 Splice_Site p.X146_splice 0.27 TCGA-06-5416-01 2 201791562 201791562 G A ORC2 Nonsense_Mutation p.R327* 0.27 TCGA-06-5416-01 2 20201720 20201720 A G MATN3 Silent p.C346C 0.21 TCGA-06-5416-01 2 20201841 20201841 G A MATN3 Missense_Mutation p.A306V 0.33 tolerated(0.12) benign(0.006) TCGA-06-5416-01 2 202073854 202073854 G A CASP10 Silent p.T328T 0.55 TCGA-06-5416-01 2 202123005 202123005 C T CASP8 Silent p.F17F 0.24 TCGA-06-5416-01 2 202173878 202173878 C T ALS2CR12 Silent p.Q257Q 0.28 TCGA-06-5416-01 2 202257639 202257639 A C TRAK2 Missense_Mutation p.F369C 0.28 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 2 202257694 202257694 G A TRAK2 Missense_Mutation p.R351C 0.33 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 202264196 202264196 G A TRAK2 Silent p.L128L 0.24 TCGA-06-5416-01 2 202400991 202400991 G A ALS2CR11 Missense_Mutation p.S420L 0.52 tolerated(0.4) benign(0.001) TCGA-06-5416-01 2 202490778 202490778 G T TMEM237 Missense_Mutation p.S377Y 0.15 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 2 202509950 202509950 C T MPP4 Missense_Mutation p.D633N 0.57 tolerated_low_confidence(0.08) benign(0.027) TCGA-06-5416-01 2 202512420 202512420 C A MPP4 Missense_Mutation p.K571N 0.23 tolerated(0.34) probably_damaging(0.99) TCGA-06-5416-01 2 202512512 202512512 A G MPP4 Missense_Mutation p.Y541H 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 202514862 202514862 C T MPP4 Missense_Mutation p.E470K 0.16 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 2 202514889 202514889 C A MPP4 Splice_Site p.X461_splice 0.80 TCGA-06-5416-01 2 202571653 202571653 C T ALS2 Missense_Mutation p.R1499H 0.58 deleterious(0.01) possibly_damaging(0.459) TCGA-06-5416-01 2 202755644 202755644 C T CDK15 3'UTR 0.28 TCGA-06-5416-01 2 203149128 203149128 C T NOP58 Missense_Mutation p.R120C 0.32 deleterious(0) benign(0.439) TCGA-06-5416-01 2 203383663 203383663 A G BMPR2 Missense_Mutation p.Y247C 0.31 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 203560683 203560683 G A FAM117B Silent p.P227P 0.26 TCGA-06-5416-01 2 203684585 203684585 C T ICA1L Missense_Mutation p.E133K 0.28 deleterious(0) possibly_damaging(0.908) TCGA-06-5416-01 2 203817296 203817296 C T CARF Silent p.S107S 0.51 TCGA-06-5416-01 2 203834776 203834776 G A CARF Missense_Mutation p.G363D 0.59 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 2 203847047 203847047 C T CARF Silent p.L648L 0.59 TCGA-06-5416-01 2 204073938 204073938 C T NBEAL1 Nonsense_Mutation p.R2531* 0.35 TCGA-06-5416-01 2 204154519 204154519 C T CYP20A1 Nonsense_Mutation p.R335* 0.19 TCGA-06-5416-01 2 204267437 204267437 C A ABI2 Missense_Mutation p.P324H 0.25 deleterious(0) possibly_damaging(0.906) TCGA-06-5416-01 2 204326635 204326635 G A RAPH1 Missense_Mutation p.A249V 0.56 benign(0.406) TCGA-06-5416-01 2 20455847 20455847 C T PUM2 Missense_Mutation p.E857K 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 20460163 20460163 G T PUM2 Missense_Mutation p.L764M 0.55 tolerated(0.07) probably_damaging(0.987) TCGA-06-5416-01 2 206166372 206166372 G A PARD3B Silent p.E797E 0.62 TCGA-06-5416-01 2 206547956 206547956 A G NRP2 5'UTR 0.75 TCGA-06-5416-01 2 206580936 206580936 C T NRP2 Missense_Mutation p.R91W 0.30 tolerated(0.15) probably_damaging(1) TCGA-06-5416-01 2 206608152 206608152 C T NRP2 Missense_Mutation p.A506V 0.32 tolerated(0.14) benign(0.411) TCGA-06-5416-01 2 206608154 206608154 C T NRP2 Missense_Mutation p.R507C 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 206610475 206610475 C T NRP2 Silent p.F549F 0.33 TCGA-06-5416-01 2 206641233 206641233 C T NRP2 Intron 0.29 TCGA-06-5416-01 2 206911281 206911281 C T INO80D Silent p.S340S 0.53 TCGA-06-5416-01 2 206911313 206911313 C T INO80D Missense_Mutation p.G330R 0.31 deleterious(0.01) possibly_damaging(0.862) TCGA-06-5416-01 2 206921318 206921318 G A INO80D Nonsense_Mutation p.R190* 0.39 TCGA-06-5416-01 2 207024537 207024537 C A EEF1B2 5'UTR 0.67 TCGA-06-5416-01 2 207024675 207024675 C T EEF1B2 5'UTR 0.57 TCGA-06-5416-01 2 207170575 207170575 G A ZDBF2 Silent p.K441K 0.25 TCGA-06-5416-01 2 207173272 207173272 G T ZDBF2 Silent p.V1340V 0.27 TCGA-06-5416-01 2 207175417 207175417 C A ZDBF2 Silent p.P2055P 0.12 TCGA-06-5416-01 2 207176196 207176196 G A ZDBF2 Missense_Mutation p.R2315Q 0.38 tolerated(0.21) benign(0) TCGA-06-5416-01 2 207459619 207459619 C T ADAM23 Missense_Mutation p.S746L 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 207482324 207482324 C T ADAM23 Silent p.F824F 0.28 TCGA-06-5416-01 2 207482468 207482468 A G ADAM23 3'UTR 0.29 TCGA-06-5416-01 2 207569604 207569604 C T DYTN Missense_Mutation p.R149Q 0.54 tolerated(0.09) possibly_damaging(0.831) TCGA-06-5416-01 2 207814343 207814343 C T CPO Missense_Mutation p.S24F 0.32 tolerated(0.73) benign(0.001) TCGA-06-5416-01 2 207823074 207823074 G A CPO Missense_Mutation p.G106E 0.51 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 208615703 208615703 C A CCNYL1 Missense_Mutation p.L226M 0.32 deleterious(0) probably_damaging(0.942) TCGA-06-5416-01 2 20870666 20870666 G T GDF7 Missense_Mutation p.E278D 0.37 tolerated(0.21) benign(0.003) TCGA-06-5416-01 2 208866546 208866546 C A PLEKHM3 5'UTR 0.40 TCGA-06-5416-01 2 209007614 209007614 C A CRYGB Missense_Mutation p.K92N 0.54 deleterious(0) possibly_damaging(0.535) TCGA-06-5416-01 2 209025561 209025561 G A CRYGA Silent p.V164V 0.27 TCGA-06-5416-01 2 209189649 209189649 A T PIKFYVE Silent p.R782R 0.31 TCGA-06-5416-01 2 209195306 209195306 G A PIKFYVE Missense_Mutation p.R1284H 0.56 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 2 209308076 209308076 A G PTH2R Silent p.R171R 0.25 TCGA-06-5416-01 2 210595182 210595182 C T MAP2 3'UTR 0.55 TCGA-06-5416-01 2 210642204 210642204 G A UNC80 Missense_Mutation p.R174Q 0.52 possibly_damaging(0.655) TCGA-06-5416-01 2 210887634 210887634 C T KANSL1L 3'UTR 0.21 TCGA-06-5416-01 2 210887784 210887784 G T KANSL1L Silent p.I951I 0.32 TCGA-06-5416-01 2 211081184 211081184 G A ACADL Silent p.V141V 0.24 TCGA-06-5416-01 2 211507249 211507249 C A CPS1 Missense_Mutation p.R1007S 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 2 211540476 211540476 G A CPS1 Missense_Mutation p.D1402N 0.33 deleterious(0.03) benign(0.006) TCGA-06-5416-01 2 212248450 212248450 G A ERBB4 Missense_Mutation p.R1273W 0.33 tolerated(0.18) possibly_damaging(0.676) TCGA-06-5416-01 2 21228011 21228011 T C APOB Missense_Mutation p.E3910G 0.28 probably_damaging(0.997) TCGA-06-5416-01 2 21228053 21228053 G A APOB Missense_Mutation p.A3896V 0.29 benign(0.008) TCGA-06-5416-01 2 21229843 21229843 C T APOB Silent p.L3299L 0.20 TCGA-06-5416-01 2 21230633 21230633 G A APOB Missense_Mutation p.S3036F 0.29 possibly_damaging(0.64) TCGA-06-5416-01 2 21233309 21233309 G A APOB Missense_Mutation p.A2144V 0.30 benign(0.265) TCGA-06-5416-01 2 21238072 21238072 G T APOB Missense_Mutation p.T1190N 0.24 benign(0.046) TCGA-06-5416-01 2 21260882 21260882 G T APOB Missense_Mutation p.S162Y 0.31 probably_damaging(0.93) TCGA-06-5416-01 2 21260903 21260903 T C APOB Missense_Mutation p.N155S 0.28 possibly_damaging(0.578) TCGA-06-5416-01 2 21266388 21266388 G A APOB Missense_Mutation p.P40S 0.29 benign(0.001) TCGA-06-5416-01 2 214182141 214182141 G A SPAG16 Intron 0.34 TCGA-06-5416-01 2 215279028 215279028 C A VWC2L Silent p.I37I 0.28 TCGA-06-5416-01 2 215901740 215901740 C A ABCA12 Missense_Mutation p.G308C 0.16 tolerated(0.07) probably_damaging(0.989) TCGA-06-5416-01 2 215928927 215928927 C T ABCA12 Missense_Mutation p.R60Q 0.63 deleterious(0) probably_damaging(0.943) TCGA-06-5416-01 2 216274339 216274339 C T FN1 Missense_Mutation p.G749E 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 216288956 216288956 C T FN1 Missense_Mutation p.E377K 0.60 tolerated(0.13) probably_damaging(0.998) TCGA-06-5416-01 2 216981435 216981435 C T XRCC5 Silent p.G63G 0.51 TCGA-06-5416-01 2 217070056 217070056 C T XRCC5 3'UTR 0.21 TCGA-06-5416-01 2 217123955 217123955 C A MARCH4 3'UTR 0.07 TCGA-06-5416-01 2 217142457 217142457 C T MARCH4 Missense_Mutation p.R268H 0.32 deleterious(0) possibly_damaging(0.501) TCGA-06-5416-01 2 217311861 217311861 C T SMARCAL1 Missense_Mutation p.R611C 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 217315638 217315638 G T SMARCAL1 Missense_Mutation p.V641F 0.26 deleterious(0) possibly_damaging(0.878) TCGA-06-5416-01 2 218696245 218696245 C A TNS1 Missense_Mutation p.K977N 0.74 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 218925232 218925232 G T CXCR2P1 RNA 0.38 TCGA-06-5416-01 2 218938095 218938095 G A RUFY4 Nonsense_Mutation p.W172* 0.48 TCGA-06-5416-01 2 219247814 219247814 G T SLC11A1 Missense_Mutation p.D47Y 0.26 deleterious(0.01) benign(0.429) TCGA-06-5416-01 2 219320334 219320334 G A USP37 Missense_Mutation p.R941W 0.28 deleterious(0.02) probably_damaging(0.995) TCGA-06-5416-01 2 219339402 219339402 T G USP37 Missense_Mutation p.E750D 0.30 tolerated(0.32) benign(0.022) TCGA-06-5416-01 2 219411766 219411766 G A USP37 Nonsense_Mutation p.R160* 0.26 TCGA-06-5416-01 2 219494262 219494262 G A PLCD4 Missense_Mutation p.R332H 0.34 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 2 219496869 219496869 G A PLCD4 Missense_Mutation p.R428K 0.24 deleterious(0.02) benign(0.009) TCGA-06-5416-01 2 219530639 219530639 C A RNF25 Missense_Mutation p.Q191H 0.06 tolerated(0.06) possibly_damaging(0.882) TCGA-06-5416-01 2 219564040 219564040 G A STK36 Missense_Mutation p.R1258Q 0.58 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 2 219617673 219617673 A C TTLL4 Missense_Mutation p.K1055T 0.06 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 2 219677782 219677782 G A CYP27A1 Missense_Mutation p.G327D 0.51 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 2 219691723 219691723 C T PRKAG3 Missense_Mutation p.A366T 0.61 tolerated(1) probably_damaging(0.98) TCGA-06-5416-01 2 219692034 219692034 G A PRKAG3 Missense_Mutation p.P313L 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 219824855 219824855 C T CDK5R2 Missense_Mutation p.L105F 0.57 tolerated(0.35) possibly_damaging(0.849) TCGA-06-5416-01 2 219825520 219825520 G T CDK5R2 Missense_Mutation p.K326N 0.46 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 2 219868988 219868988 C T CCDC108 Silent p.K1747K 0.36 TCGA-06-5416-01 2 219870795 219870795 C T CCDC108 Missense_Mutation p.D1624N 0.29 deleterious(0.01) possibly_damaging(0.674) TCGA-06-5416-01 2 219883815 219883815 A G CCDC108 Missense_Mutation p.V1187A 0.27 deleterious(0.05) benign(0.159) TCGA-06-5416-01 2 219888095 219888095 C A CCDC108 Missense_Mutation p.S885I 0.65 tolerated(0.22) benign(0.132) TCGA-06-5416-01 2 220022355 220022355 C T NHEJ1 Missense_Mutation p.D77N 0.39 tolerated(0.48) benign(0.062) TCGA-06-5416-01 2 220028155 220028155 G A SLC23A3 Silent p.L474L 0.26 TCGA-06-5416-01 2 220037256 220037256 C A CNPPD1 3'UTR 0.61 TCGA-06-5416-01 2 220040987 220040987 C T CNPPD1 Missense_Mutation p.E46K 0.26 tolerated(0.41) benign(0.013) TCGA-06-5416-01 2 220072986 220072986 C T ZFAND2B Missense_Mutation p.A148V 0.17 deleterious(0.02) benign(0.437) TCGA-06-5416-01 2 220074000 220074000 C T ZFAND2B Missense_Mutation p.S249L 0.64 tolerated(0.3) benign(0) TCGA-06-5416-01 2 220077738 220077738 G A ABCB6 Missense_Mutation p.L619F 0.19 tolerated(0.11) benign(0.006) TCGA-06-5416-01 2 220095054 220095054 C A ANKZF1 Silent p.V25V 0.28 TCGA-06-5416-01 2 220097338 220097338 G A ANKZF1 Missense_Mutation p.R164Q 0.54 tolerated(0.07) benign(0.035) TCGA-06-5416-01 2 220100006 220100006 C T ANKZF1 Silent p.L555L 0.52 TCGA-06-5416-01 2 220111248 220111248 C A STK16 Intron 0.33 TCGA-06-5416-01 2 220115186 220115186 C T TUBA4A Missense_Mutation p.G412D 0.20 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-06-5416-01 2 220154995 220154995 C T PTPRN Missense_Mutation p.A965T 0.08 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 2 220155576 220155576 G A PTPRN Silent p.I922I 0.32 TCGA-06-5416-01 2 220161176 220161176 G A PTPRN Silent p.I791I 0.28 TCGA-06-5416-01 2 220161495 220161495 G A PTPRN Silent p.S762S 0.36 TCGA-06-5416-01 2 220251103 220251103 C T DNPEP Missense_Mutation p.G122S 0.20 deleterious(0.03) possibly_damaging(0.817) TCGA-06-5416-01 2 220285334 220285334 G A DES Missense_Mutation p.A285T 0.37 deleterious(0.01) probably_damaging(0.95) TCGA-06-5416-01 2 220286161 220286161 C T DES Missense_Mutation p.R375W 0.27 deleterious(0) possibly_damaging(0.892) TCGA-06-5416-01 2 220348671 220348671 G A SPEG Silent p.Q2162Q 0.21 TCGA-06-5416-01 2 220349153 220349153 G A SPEG Missense_Mutation p.S2323N 0.31 probably_damaging(0.985) TCGA-06-5416-01 2 220354184 220354184 C T SPEG Missense_Mutation p.P2815L 0.48 benign(0.001) TCGA-06-5416-01 2 220354317 220354317 G A SPEG Silent p.E2859E 0.27 TCGA-06-5416-01 2 220356957 220356957 C T SPEG Nonsense_Mutation p.R3196* 0.26 TCGA-06-5416-01 2 220370001 220370001 G T GMPPA Missense_Mutation p.Q224H 0.26 deleterious(0.01) possibly_damaging(0.838) TCGA-06-5416-01 2 220432463 220432463 G A OBSL1 Missense_Mutation p.T504I 0.25 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 2 220434963 220434963 G A OBSL1 Missense_Mutation p.A331V 0.63 deleterious(0.02) benign(0.35) TCGA-06-5416-01 2 220473825 220473825 G T STK11IP Missense_Mutation p.D617Y 0.38 deleterious(0) possibly_damaging(0.748) TCGA-06-5416-01 2 220492718 220492718 G A SLC4A3 Missense_Mutation p.A2T 0.30 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-06-5416-01 2 220497710 220497710 G A SLC4A3 Missense_Mutation p.R446H 0.35 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 2 220499298 220499298 G A SLC4A3 Missense_Mutation p.R600H 0.55 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 220504370 220504370 C T SLC4A3 Missense_Mutation p.R1091C 0.28 deleterious(0.01) possibly_damaging(0.899) TCGA-06-5416-01 2 222291321 222291321 C A EPHA4 Missense_Mutation p.L903F 0.29 tolerated(0.14) benign(0.048) TCGA-06-5416-01 2 222301218 222301218 T C EPHA4 Silent p.A749A 0.26 TCGA-06-5416-01 2 222365784 222365784 C T EPHA4 Missense_Mutation p.R311Q 0.27 tolerated(0.24) benign(0.028) TCGA-06-5416-01 2 223066013 223066013 C T PAX3 Intron 0.62 TCGA-06-5416-01 2 223085999 223085999 C T PAX3 Silent p.P300P 0.58 TCGA-06-5416-01 2 223096930 223096930 C T PAX3 Missense_Mutation p.R220H 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 2 223489197 223489197 C T FARSB Missense_Mutation p.E322K 0.26 tolerated(0.26) benign(0.216) TCGA-06-5416-01 2 223554167 223554167 C T MOGAT1 Nonsense_Mutation p.R153* 0.28 TCGA-06-5416-01 2 223799310 223799310 G A ACSL3 Missense_Mutation p.R637Q 0.34 tolerated(0.38) benign(0.001) TCGA-06-5416-01 2 224462236 224462236 G T SCG2 Missense_Mutation p.L589M 0.33 tolerated(0.91) benign(0.107) TCGA-06-5416-01 2 224462450 224462450 C A SCG2 Missense_Mutation p.E517D 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 2 225368494 225368494 G T CUL3 Missense_Mutation p.L418I 0.51 deleterious(0.05) possibly_damaging(0.764) TCGA-06-5416-01 2 225653880 225653880 G T DOCK10 Missense_Mutation p.F1773L 0.24 tolerated(0.05) probably_damaging(0.989) TCGA-06-5416-01 2 225698946 225698946 G T DOCK10 Missense_Mutation p.T962N 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 225729655 225729655 G A DOCK10 Silent p.T469T 0.58 TCGA-06-5416-01 2 225739030 225739030 G A DOCK10 Nonsense_Mutation p.R352* 0.55 TCGA-06-5416-01 2 225740808 225740808 G T DOCK10 Missense_Mutation p.P293H 0.56 tolerated(0.2) probably_damaging(0.999) TCGA-06-5416-01 2 225781473 225781473 G A DOCK10 Missense_Mutation p.T91M 0.12 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 226447558 226447558 G A NYAP2 Silent p.S475S 0.63 TCGA-06-5416-01 2 226491716 226491716 G A NYAP2 Missense_Mutation p.A568T 0.67 tolerated(0.58) benign(0.004) TCGA-06-5416-01 2 226516273 226516273 C T NYAP2 Missense_Mutation p.R652C 0.57 deleterious_low_confidence(0) possibly_damaging(0.681) TCGA-06-5416-01 2 227660213 227660213 C T IRS1 Missense_Mutation p.R1081H 0.31 tolerated(0.15) benign(0.001) TCGA-06-5416-01 2 228145304 228145304 G A COL4A3 Missense_Mutation p.R791Q 0.23 unknown(0) TCGA-06-5416-01 2 228176539 228176539 G A COL4A3 Missense_Mutation p.E1656K 0.28 unknown(0) TCGA-06-5416-01 2 228221909 228221909 C T MFF 3'UTR 0.29 TCGA-06-5416-01 2 228228549 228228549 C A TM4SF20 Missense_Mutation p.G194V 0.28 tolerated(0.07) probably_damaging(0.938) TCGA-06-5416-01 2 228230807 228230807 A G TM4SF20 Splice_Site p.X134_splice 0.27 TCGA-06-5416-01 2 228563496 228563496 G T SLC19A3 Missense_Mutation p.S312Y 0.27 tolerated(0.12) benign(0.366) TCGA-06-5416-01 2 228762998 228762998 G T DAW1 Splice_Site p.X180_splice 0.23 TCGA-06-5416-01 2 228884741 228884741 G A SPHKAP Missense_Mutation p.P277S 0.22 tolerated(0.54) benign(0.001) TCGA-06-5416-01 2 230723647 230723647 C T TRIP12 Missense_Mutation p.E248K 0.24 tolerated_low_confidence(0.1) benign(0.03) TCGA-06-5416-01 2 230841001 230841001 A T FBXO36 Silent p.R47R 0.31 TCGA-06-5416-01 2 230911191 230911191 G T SLC16A14 Missense_Mutation p.N217K 0.30 tolerated(0.94) benign(0.021) TCGA-06-5416-01 2 231035 231035 C A SH3YL1 Missense_Mutation p.Q230H 0.34 deleterious(0.05) benign(0.281) TCGA-06-5416-01 2 231042397 231042397 C A SP110 Splice_Site p.X483_splice 0.32 TCGA-06-5416-01 2 231079721 231079721 T C SP110 Missense_Mutation p.Q87R 0.62 tolerated(1) benign(0.145) TCGA-06-5416-01 2 231106 231106 G A SH3YL1 Missense_Mutation p.L207F 0.28 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 2 231313845 231313845 C T SP100 Missense_Mutation p.S189L 0.27 tolerated(0.32) benign(0.009) TCGA-06-5416-01 2 231624770 231624770 T C CAB39 Silent p.N18N 0.11 TCGA-06-5416-01 2 231658026 231658026 T G CAB39 Missense_Mutation p.I126M 0.23 deleterious(0.03) benign(0.356) TCGA-06-5416-01 2 231683362 231683362 G T CAB39 Missense_Mutation p.K323N 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 231738260 231738260 C A ITM2C Missense_Mutation p.F83L 0.22 tolerated(0.07) benign(0.023) TCGA-06-5416-01 2 231742781 231742781 C T ITM2C Silent p.F257F 0.54 TCGA-06-5416-01 2 231774716 231774716 C T GPR55 3'UTR 0.55 TCGA-06-5416-01 2 231973420 231973420 A G HTR2B Silent p.N419N 0.28 TCGA-06-5416-01 2 232018349 232018349 C T PSMD1 Silent p.G729G 0.29 TCGA-06-5416-01 2 232146779 232146779 C T ARMC9 Missense_Mutation p.P520L 0.20 deleterious(0.01) possibly_damaging(0.463) TCGA-06-5416-01 2 232262773 232262773 C T B3GNT7 Missense_Mutation p.R115C 0.57 deleterious(0) possibly_damaging(0.849) TCGA-06-5416-01 2 232262827 232262827 G A B3GNT7 Missense_Mutation p.D133N 0.63 tolerated(0.07) benign(0.006) TCGA-06-5416-01 2 232320797 232320797 C A NCL Nonsense_Mutation p.E586* 0.28 TCGA-06-5416-01 2 232393341 232393341 C T NMUR1 Missense_Mutation p.V131I 0.34 tolerated(0.17) benign(0.001) TCGA-06-5416-01 2 232458002 232458002 G A C2orf57 Missense_Mutation p.D114N 0.27 tolerated(0.39) possibly_damaging(0.908) TCGA-06-5416-01 2 232601924 232601924 G A PDE6D Missense_Mutation p.S115F 0.26 deleterious(0.01) probably_damaging(0.927) TCGA-06-5416-01 2 232653264 232653264 G T COPS7B Splice_Site 0.21 TCGA-06-5416-01 2 233001275 233001275 G A DIS3L2 Missense_Mutation p.A266T 0.53 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 2 233199413 233199413 C T DIS3L2 Missense_Mutation p.R788C 0.52 deleterious(0) possibly_damaging(0.677) TCGA-06-5416-01 2 233243731 233243731 G T ALPP Missense_Mutation p.G43C 0.28 deleterious(0.02) benign(0.422) TCGA-06-5416-01 2 233246283 233246283 C T ALPP Silent p.F462F 0.31 TCGA-06-5416-01 2 233274361 233274361 G A ALPPL2 Missense_Mutation p.A460T 0.37 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 2 233274378 233274378 G A ALPPL2 Silent p.A465A 0.53 TCGA-06-5416-01 2 233322749 233322749 G T ALPI Missense_Mutation p.D300Y 0.50 deleterious(0) benign(0.379) TCGA-06-5416-01 2 233347633 233347633 T C ECEL1 Missense_Mutation p.N538S 0.27 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 2 233351035 233351035 C T ECEL1 Missense_Mutation p.R110H 0.53 tolerated(0.21) benign(0.006) TCGA-06-5416-01 2 233399854 233399854 G A CHRND Nonsense_Mutation p.W462* 0.27 TCGA-06-5416-01 2 233405320 233405320 C T CHRNG Silent p.C83C 0.50 TCGA-06-5416-01 2 233406091 233406091 G A CHRNG Missense_Mutation p.G120S 0.25 deleterious(0.01) probably_damaging(0.937) TCGA-06-5416-01 2 233635668 233635668 G A KCNJ13 Silent p.I135I 0.19 TCGA-06-5416-01 2 233655554 233655554 G A GIGYF2 Missense_Mutation p.E309K 0.33 probably_damaging(0.993) TCGA-06-5416-01 2 233721549 233721549 C T GIGYF2 Silent p.I1314I 0.31 TCGA-06-5416-01 2 233897495 233897495 G A NEU2 Silent p.A38A 0.20 TCGA-06-5416-01 2 233944050 233944050 G A INPP5D Missense_Mutation p.R47Q 0.22 tolerated(1) benign(0.013) TCGA-06-5416-01 2 234070376 234070376 G T INPP5D Nonsense_Mutation p.E370* 0.21 TCGA-06-5416-01 2 234198620 234198620 T G ATG16L1 Missense_Mutation p.C442G 0.36 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 2 234240356 234240356 G A SAG Silent p.A268A 0.27 TCGA-06-5416-01 2 234360661 234360661 G A DGKD Missense_Mutation p.R740H 0.20 tolerated(0.54) benign(0.043) TCGA-06-5416-01 2 234465656 234465656 G A USP40 Nonsense_Mutation p.Q143* 0.30 TCGA-06-5416-01 2 234581085 234581085 G A UGT1A9 Missense_Mutation p.A169T 0.27 tolerated(0.08) benign(0.004) TCGA-06-5416-01 2 234590785 234590785 A C UGT1A7 Silent p.R68R 0.35 TCGA-06-5416-01 2 234621934 234621934 G A UGT1A5 Silent p.S99S 0.32 TCGA-06-5416-01 2 234622375 234622375 G T UGT1A5 Silent p.V246V 0.52 TCGA-06-5416-01 2 234622441 234622441 G A UGT1A5 Silent p.P268P 0.25 TCGA-06-5416-01 2 234652301 234652301 C T UGT1A10 Intron 0.08 TCGA-06-5416-01 2 234676905 234676905 C T UGT1A10 Missense_Mutation p.S372F 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 234869466 234869466 G T TRPM8 Missense_Mutation p.R470I 0.24 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 2 234894339 234894339 G A TRPM8 Silent p.T923T 0.26 TCGA-06-5416-01 2 234915566 234915566 T C TRPM8 Missense_Mutation p.I1067T 0.31 tolerated(0.32) benign(0) TCGA-06-5416-01 2 235961299 235961299 C T SH3BP4 Missense_Mutation p.R858W 0.53 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 235962360 235962360 G A SH3BP4 Missense_Mutation p.R931H 0.54 tolerated(0.24) possibly_damaging(0.84) TCGA-06-5416-01 2 237233416 237233416 G A IQCA1 Missense_Mutation p.A795V 0.25 tolerated(0.22) benign(0.066) TCGA-06-5416-01 2 237246926 237246926 C T IQCA1 Missense_Mutation p.D686N 0.24 tolerated(0.19) benign(0.085) TCGA-06-5416-01 2 237402425 237402425 C A IQCA1 Missense_Mutation p.D148Y 0.27 deleterious(0.03) benign(0.142) TCGA-06-5416-01 2 237406131 237406131 C A IQCA1 Splice_Site p.X4_splice 0.22 TCGA-06-5416-01 2 237489150 237489150 C A ACKR3 Missense_Mutation p.F14L 0.27 tolerated(0.47) benign(0.001) TCGA-06-5416-01 2 237998637 237998637 G T COPS8 Missense_Mutation p.D111Y 0.30 deleterious(0) possibly_damaging(0.876) TCGA-06-5416-01 2 238244807 238244807 G A COL6A3 Missense_Mutation p.A2979V 0.51 unknown(0) TCGA-06-5416-01 2 238250758 238250758 C T COL6A3 Missense_Mutation p.R2572K 0.31 unknown(0) TCGA-06-5416-01 2 238253485 238253485 C T COL6A3 Silent p.G2392G 0.60 TCGA-06-5416-01 2 238274452 238274452 C A COL6A3 Missense_Mutation p.E1909D 0.27 benign(0.034) TCGA-06-5416-01 2 238275566 238275566 G A COL6A3 Missense_Mutation p.S1755L 0.57 probably_damaging(0.993) TCGA-06-5416-01 2 238275922 238275922 C T COL6A3 Silent p.K1636K 0.36 TCGA-06-5416-01 2 238285679 238285679 T C COL6A3 Missense_Mutation p.I936V 0.27 benign(0.268) TCGA-06-5416-01 2 238285841 238285841 C T COL6A3 Missense_Mutation p.D882N 0.53 probably_damaging(1) TCGA-06-5416-01 2 238287654 238287654 G T COL6A3 Missense_Mutation p.Q708K 0.33 possibly_damaging(0.714) TCGA-06-5416-01 2 238475713 238475713 C T PRLH Silent p.F53F 0.56 TCGA-06-5416-01 2 238672633 238672633 C T LRRFIP1 Silent p.T759T 0.34 TCGA-06-5416-01 2 238726701 238726701 C T RBM44 Missense_Mutation p.S381F 0.23 tolerated(0.05) benign(0.045) TCGA-06-5416-01 2 238727193 238727193 C A RBM44 Missense_Mutation p.S545Y 0.52 tolerated(0.48) probably_damaging(0.983) TCGA-06-5416-01 2 238733043 238733043 G A RBM44 Nonsense_Mutation p.W811* 0.32 TCGA-06-5416-01 2 238737922 238737922 G T RBM44 Missense_Mutation p.G889V 0.26 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 2 239016585 239016585 C A ESPNL Missense_Mutation p.H276N 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-06-5416-01 2 239040086 239040086 G A ESPNL Missense_Mutation p.G911S 0.38 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 2 239237339 239237339 G A TRAF3IP1 Missense_Mutation p.D123N 0.17 deleterious(0.01) possibly_damaging(0.721) TCGA-06-5416-01 2 239257479 239257479 T A TRAF3IP1 Missense_Mutation p.S453T 0.34 tolerated(0.27) benign(0.262) TCGA-06-5416-01 2 23974958 23974958 C A ATAD2B Splice_Site p.X1446_splice 0.36 TCGA-06-5416-01 2 23980404 23980404 G A ATAD2B Missense_Mutation p.S1321L 0.22 tolerated(0.72) benign(0.017) TCGA-06-5416-01 2 24046425 24046425 C T ATAD2B Missense_Mutation p.D612N 0.52 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 240923041 240923041 T C NDUFA10 Intron 0.73 TCGA-06-5416-01 2 240969775 240969775 C T OR6B2 Silent p.Q24Q 0.31 TCGA-06-5416-01 2 241078654 241078654 C T OTOS Missense_Mutation p.R68Q 0.57 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 2 241463469 241463469 C T ANKMY1 Silent p.T466T 0.30 TCGA-06-5416-01 2 241468888 241468888 G A ANKMY1 Silent p.V84V 0.62 TCGA-06-5416-01 2 241513643 241513643 T C RNPEPL1 Missense_Mutation p.V120A 0.54 deleterious(0) possibly_damaging(0.61) TCGA-06-5416-01 2 241514487 241514487 G T RNPEPL1 Missense_Mutation p.E212D 0.25 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 2 241570332 241570332 C T GPR35 3'UTR 0.31 TCGA-06-5416-01 2 241656723 241656723 G A KIF1A 3'UTR 0.68 TCGA-06-5416-01 2 241660417 241660417 C T KIF1A Silent p.S1594S 0.28 TCGA-06-5416-01 2 241666246 241666246 G A KIF1A Silent p.I1373I 0.14 TCGA-06-5416-01 2 241710438 241710438 C T KIF1A Missense_Mutation p.E431K 0.16 tolerated(0.08) benign(0.063) TCGA-06-5416-01 2 241724468 241724468 C T KIF1A Missense_Mutation p.V220I 0.57 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 2 241831057 241831057 G A C2orf54 Missense_Mutation p.A213V 0.27 tolerated(0.41) benign(0.019) TCGA-06-5416-01 2 241835051 241835051 G A C2orf54 Missense_Mutation p.R122W 0.28 deleterious(0.03) benign(0.002) TCGA-06-5416-01 2 242065779 242065779 A G PASK Silent p.L851L 0.04 TCGA-06-5416-01 2 242078154 242078154 C T PASK Missense_Mutation p.R219K 0.27 tolerated(0.16) benign(0.006) TCGA-06-5416-01 2 242274562 242274562 C T SEPT2 Missense_Mutation p.S51L 0.65 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 2 242289491 242289491 C T SEPT2 Missense_Mutation p.R330C 0.60 deleterious(0) unknown(0) TCGA-06-5416-01 2 242375924 242375924 C T FARP2 Nonsense_Mutation p.R377* 0.51 TCGA-06-5416-01 2 24244540 24244540 C T MFSD2B Missense_Mutation p.A235V 0.22 deleterious(0) probably_damaging(0.911) TCGA-06-5416-01 2 242523917 242523917 G T THAP4 3'UTR 0.36 TCGA-06-5416-01 2 24253938 24253938 C T C2orf44 Silent p.L677L 0.34 TCGA-06-5416-01 2 242572862 242572862 G A THAP4 Missense_Mutation p.S237L 0.27 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-06-5416-01 2 242615592 242615592 C T DTYMK Missense_Mutation p.D197N 0.23 tolerated(0.32) benign(0.001) TCGA-06-5416-01 2 242662657 242662657 G A ING5 Silent p.V217V 0.60 TCGA-06-5416-01 2 24300437 24300437 C A TP53I3 3'UTR 0.26 TCGA-06-5416-01 2 24300570 24300570 C T TP53I3 Missense_Mutation p.G293D 0.43 tolerated(0.39) benign(0) TCGA-06-5416-01 2 24303812 24303812 C T TP53I3 Missense_Mutation p.A166T 0.53 deleterious(0.01) possibly_damaging(0.72) TCGA-06-5416-01 2 24406455 24406455 G T FAM228A Silent p.V114V 0.20 TCGA-06-5416-01 2 24406494 24406494 G A FAM228A Silent p.R127R 0.54 TCGA-06-5416-01 2 24427286 24427286 T C ITSN2 Silent p.G1588G 0.51 TCGA-06-5416-01 2 24480789 24480789 C A ITSN2 Missense_Mutation p.K952N 0.29 deleterious(0.01) unknown(0) TCGA-06-5416-01 2 24524027 24524027 T C ITSN2 Silent p.L359L 0.60 TCGA-06-5416-01 2 24929958 24929958 C A NCOA1 Missense_Mutation p.S540Y 0.25 deleterious(0) possibly_damaging(0.629) TCGA-06-5416-01 2 24985645 24985645 G T NCOA1 Missense_Mutation p.Q1385H 0.33 deleterious(0.01) possibly_damaging(0.459) TCGA-06-5416-01 2 25016144 25016144 G T PTRHD1 Missense_Mutation p.L35I 0.62 deleterious(0.05) probably_damaging(1) TCGA-06-5416-01 2 25061489 25061489 C T ADCY3 Missense_Mutation p.R453H 0.54 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 2 25463184 25463184 G A DNMT3A Missense_Mutation p.S770L 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 2 25464537 25464537 C T DNMT3A Missense_Mutation p.R659H 0.61 deleterious(0.02) probably_damaging(0.937) TCGA-06-5416-01 2 25611186 25611186 G A DTNB Silent p.G540G 0.20 TCGA-06-5416-01 2 25819110 25819110 C A DTNB Splice_Site p.X150_splice 0.28 TCGA-06-5416-01 2 25965334 25965334 G T ASXL2 Missense_Mutation p.S1291Y 0.21 deleterious(0) possibly_damaging(0.88) TCGA-06-5416-01 2 25966732 25966732 C A ASXL2 Missense_Mutation p.S825I 0.50 deleterious_low_confidence(0) benign(0.124) TCGA-06-5416-01 2 25978933 25978933 T G ASXL2 Missense_Mutation p.E330D 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 26203580 26203580 G A KIF3C Missense_Mutation p.R403W 0.30 possibly_damaging(0.544) TCGA-06-5416-01 2 26350815 26350815 C T RAB10 Nonsense_Mutation p.R172* 0.27 TCGA-06-5416-01 2 26492860 26492860 G A HADHB Silent p.A83A 0.29 TCGA-06-5416-01 2 26536367 26536367 C T GPR113 Missense_Mutation p.A451T 0.35 tolerated(0.12) probably_damaging(0.946) TCGA-06-5416-01 2 26539894 26539894 G T GPR113 Missense_Mutation p.L130M 0.32 tolerated_low_confidence(0.06) possibly_damaging(0.666) TCGA-06-5416-01 2 26611993 26611993 G T EPT1 3'UTR 0.23 TCGA-06-5416-01 2 26667647 26667647 G A DRC1 Silent p.A409A 0.27 TCGA-06-5416-01 2 26672923 26672923 C T DRC1 Silent p.C523C 0.32 TCGA-06-5416-01 2 26677608 26677608 C A DRC1 Silent p.S671S 0.25 TCGA-06-5416-01 2 26689627 26689627 C T OTOF Silent p.P1485P 0.31 TCGA-06-5416-01 2 26699774 26699774 C A OTOF Missense_Mutation p.K887N 0.34 deleterious(0.01) possibly_damaging(0.891) TCGA-06-5416-01 2 26950748 26950748 C T KCNK3 Missense_Mutation p.S166L 0.29 tolerated(0.1) possibly_damaging(0.838) TCGA-06-5416-01 2 27164869 27164869 G A DPYSL5 Missense_Mutation p.A381T 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 2 27293187 27293187 A C AGBL5 3'UTR 0.60 TCGA-06-5416-01 2 27307389 27307389 C T EMILIN1 Silent p.I849I 0.23 TCGA-06-5416-01 2 27322023 27322023 G A CGREF1 3'Flank 0.25 TCGA-06-5416-01 2 27351332 27351332 G A ABHD1 Silent p.P46P 0.25 TCGA-06-5416-01 2 27375604 27375604 G A TCF23 Missense_Mutation p.D172N 0.60 tolerated(0.12) benign(0.084) TCGA-06-5416-01 2 27439435 27439435 C A ATRAID Missense_Mutation p.L233I 0.23 deleterious(0.01) benign(0.423) TCGA-06-5416-01 2 27445129 27445129 G T CAD Missense_Mutation p.Q140H 0.66 tolerated(0.55) benign(0.252) TCGA-06-5416-01 2 27445775 27445775 G A CAD Missense_Mutation p.A227T 0.31 tolerated(0.58) benign(0.028) TCGA-06-5416-01 2 27461342 27461342 C A CAD Missense_Mutation p.T1635N 0.54 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 2 27466137 27466137 G A CAD Silent p.P2184P 0.58 TCGA-06-5416-01 2 27500655 27500655 G T DNAJC5G Missense_Mutation p.E49D 0.21 tolerated_low_confidence(0.11) benign(0) TCGA-06-5416-01 2 27501055 27501055 G T DNAJC5G Splice_Site p.X126_splice 0.52 TCGA-06-5416-01 2 27522170 27522170 G T TRIM54 Missense_Mutation p.K133N 0.24 deleterious(0.02) benign(0.042) TCGA-06-5416-01 2 27528544 27528544 G A TRIM54 Silent p.A276A 0.58 TCGA-06-5416-01 2 27530456 27530456 G A UCN Missense_Mutation p.A103V 0.24 deleterious(0.02) possibly_damaging(0.575) TCGA-06-5416-01 2 27551343 27551343 G A GTF3C2 Nonsense_Mutation p.R750* 0.21 TCGA-06-5416-01 2 27590053 27590053 G A EIF2B4 Nonsense_Mutation p.R321* 0.25 TCGA-06-5416-01 2 27600473 27600473 G T ZNF513 Missense_Mutation p.S522Y 0.28 deleterious_low_confidence(0.05) benign(0.018) TCGA-06-5416-01 2 27681646 27681646 C A IFT172 Missense_Mutation p.K959N 0.22 tolerated(0.07) benign(0.111) TCGA-06-5416-01 2 27684135 27684135 C A IFT172 Splice_Site p.X814_splice 0.53 TCGA-06-5416-01 2 27716844 27716844 C T FNDC4 Missense_Mutation p.R136Q 0.26 deleterious(0.04) benign(0.002) TCGA-06-5416-01 2 27716892 27716892 C T FNDC4 Missense_Mutation p.S120N 0.28 deleterious(0) benign(0.175) TCGA-06-5416-01 2 27722273 27722273 G A GCKR Missense_Mutation p.G169R 0.20 deleterious(0.04) possibly_damaging(0.9) TCGA-06-5416-01 2 27728599 27728599 C T GCKR Silent p.S255S 0.27 TCGA-06-5416-01 2 27800262 27800262 G T C2orf16 Nonsense_Mutation p.E275* 0.32 TCGA-06-5416-01 2 27800416 27800416 G T C2orf16 Missense_Mutation p.R326I 0.50 deleterious(0.03) benign(0.093) TCGA-06-5416-01 2 27802271 27802271 G T C2orf16 Missense_Mutation p.E944D 0.19 deleterious(0.01) probably_damaging(0.979) TCGA-06-5416-01 2 27803002 27803002 T C C2orf16 Missense_Mutation p.V1188A 0.50 tolerated(0.08) benign(0.007) TCGA-06-5416-01 2 27803455 27803455 G T C2orf16 Missense_Mutation p.R1339I 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 27805502 27805502 G T C2orf16 3'UTR 0.27 TCGA-06-5416-01 2 27826105 27826105 T C ZNF512 Silent p.C289C 0.33 TCGA-06-5416-01 2 27830785 27830785 G A ZNF512 Missense_Mutation p.R337Q 0.33 deleterious(0) benign(0.12) TCGA-06-5416-01 2 27850363 27850363 G A CCDC121 Missense_Mutation p.R264W 0.28 deleterious(0) possibly_damaging(0.55) TCGA-06-5416-01 2 27850426 27850426 C A CCDC121 Nonsense_Mutation p.E243* 0.29 TCGA-06-5416-01 2 27884317 27884317 G A SUPT7L Intron 0.59 TCGA-06-5416-01 2 27886836 27886836 G A SLC4A1AP Missense_Mutation p.D73N 0.23 deleterious_low_confidence(0.01) benign(0.357) TCGA-06-5416-01 2 28002309 28002309 G T MRPL33 Missense_Mutation p.R53I 0.53 deleterious(0.01) benign(0.401) TCGA-06-5416-01 2 28635061 28635061 C T FOSL2 Missense_Mutation p.R243C 0.38 deleterious(0.02) benign(0.005) TCGA-06-5416-01 2 28752214 28752214 C A PLB1 Missense_Mutation p.P119H 0.23 deleterious(0.04) possibly_damaging(0.873) TCGA-06-5416-01 2 28865758 28865758 G A PLB1 Missense_Mutation p.R1403Q 0.65 tolerated(0.85) benign(0) TCGA-06-5416-01 2 29092948 29092948 A C TRMT61B Missense_Mutation p.S66A 0.20 tolerated_low_confidence(0.14) benign(0.112) TCGA-06-5416-01 2 29222099 29222099 G T FAM179A Missense_Mutation p.Q64H 0.51 deleterious(0.01) benign(0.014) TCGA-06-5416-01 2 29344297 29344297 C T CLIP4 Missense_Mutation p.P15S 0.32 tolerated(1) benign(0.001) TCGA-06-5416-01 2 29356672 29356672 G A CLIP4 Silent p.S173S 0.28 TCGA-06-5416-01 2 29416166 29416166 G A ALK Missense_Mutation p.A1596V 0.29 tolerated_low_confidence(0.06) benign(0.021) TCGA-06-5416-01 2 29416579 29416579 A G ALK Silent p.A1458A 0.20 TCGA-06-5416-01 2 29917723 29917723 C A ALK Missense_Mutation p.M315I 0.30 tolerated(0.21) benign(0.001) TCGA-06-5416-01 2 29917794 29917794 G A ALK Missense_Mutation p.R292C 0.28 tolerated_low_confidence(0.06) possibly_damaging(0.861) TCGA-06-5416-01 2 30381798 30381798 C T YPEL5 3'UTR 0.26 TCGA-06-5416-01 2 31147108 31147108 G A GALNT14 Silent p.I424I 0.22 TCGA-06-5416-01 2 31483733 31483733 G A EHD3 Missense_Mutation p.R287Q 0.49 tolerated(0.17) benign(0.023) TCGA-06-5416-01 2 31558813 31558813 G A XDH 3'UTR 0.29 TCGA-06-5416-01 2 31588364 31588364 G T XDH Missense_Mutation p.L835M 0.28 tolerated(0.09) benign(0.423) TCGA-06-5416-01 2 31589740 31589740 G A XDH Missense_Mutation p.T773I 0.55 tolerated(0.95) benign(0.12) TCGA-06-5416-01 2 32264493 32264493 C T DPY30 Silent p.T11T 0.23 TCGA-06-5416-01 2 32434563 32434563 T G SLC30A6 Missense_Mutation p.V313G 0.59 tolerated(0.14) benign(0.072) TCGA-06-5416-01 2 32449547 32449547 C T NLRC4 Missense_Mutation p.A1024T 0.53 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-06-5416-01 2 32475156 32475156 C T NLRC4 Missense_Mutation p.D593N 0.56 tolerated(0.18) benign(0.048) TCGA-06-5416-01 2 32476153 32476153 T C NLRC4 Silent p.E260E 0.23 TCGA-06-5416-01 2 32476578 32476578 G A NLRC4 Missense_Mutation p.P119S 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 2 32477742 32477742 A G NLRC4 Missense_Mutation p.F3S 0.51 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 2 3261186 3261186 C T TSSC1 Silent p.R100R 0.27 TCGA-06-5416-01 2 32640892 32640892 A C BIRC6 Missense_Mutation p.K845Q 0.54 probably_damaging(0.991) TCGA-06-5416-01 2 32673919 32673919 G A BIRC6 Missense_Mutation p.G1514D 0.26 possibly_damaging(0.554) TCGA-06-5416-01 2 32693667 32693667 G A BIRC6 Silent p.Q1981Q 0.55 TCGA-06-5416-01 2 32770834 32770834 G T BIRC6 Missense_Mutation p.L4239F 0.58 probably_damaging(0.993) TCGA-06-5416-01 2 33482400 33482400 C T LTBP1 Silent p.G739G 0.22 TCGA-06-5416-01 2 33590516 33590516 C T LTBP1 Silent p.L1553L 0.32 TCGA-06-5416-01 2 33774749 33774749 A G RASGRP3 Silent p.P491P 0.53 TCGA-06-5416-01 2 33783829 33783829 G A RASGRP3 Missense_Mutation p.R599H 0.29 deleterious(0.01) possibly_damaging(0.463) TCGA-06-5416-01 2 33810372 33810372 T C FAM98A Missense_Mutation p.Y343C 0.55 tolerated(0.06) unknown(0) TCGA-06-5416-01 2 33813496 33813496 A C FAM98A Missense_Mutation p.F143C 0.29 tolerated(0.11) benign(0.093) TCGA-06-5416-01 2 36704088 36704088 C T CRIM1 Nonsense_Mutation p.R350* 0.31 TCGA-06-5416-01 2 36774301 36774301 G A CRIM1 Missense_Mutation p.R974Q 0.25 tolerated(0.06) benign(0.005) TCGA-06-5416-01 2 36805846 36805846 A G FEZ2 Missense_Mutation p.V266A 0.24 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 2 36808536 36808536 C T FEZ2 Silent p.P177P 0.31 TCGA-06-5416-01 2 36970385 36970385 C T VIT Silent p.G87G 0.26 TCGA-06-5416-01 2 36986241 36986241 G A VIT Intron 0.29 TCGA-06-5416-01 2 37126680 37126680 T C STRN Missense_Mutation p.I261V 0.27 tolerated(0.6) benign(0.001) TCGA-06-5416-01 2 37227870 37227870 G A HEATR5B Missense_Mutation p.P1802S 0.28 tolerated(0.96) benign(0.001) TCGA-06-5416-01 2 37235781 37235781 C T HEATR5B Missense_Mutation p.E1499K 0.29 deleterious(0) possibly_damaging(0.674) TCGA-06-5416-01 2 37235899 37235899 A G HEATR5B Silent p.G1459G 0.29 TCGA-06-5416-01 2 37255077 37255077 C T HEATR5B Missense_Mutation p.R1281Q 0.27 tolerated(0.19) benign(0.027) TCGA-06-5416-01 2 37255078 37255078 G A HEATR5B Nonsense_Mutation p.R1281* 0.28 TCGA-06-5416-01 2 37276859 37276859 C A HEATR5B Missense_Mutation p.R878I 0.20 deleterious(0) probably_damaging(0.96) TCGA-06-5416-01 2 37353544 37353544 C A EIF2AK2 Missense_Mutation p.D266Y 0.28 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 2 37415644 37415644 G A SULT6B1 Missense_Mutation p.A9V 0.29 tolerated(0.05) possibly_damaging(0.754) TCGA-06-5416-01 2 37439042 37439042 T C CEBPZ Missense_Mutation p.D915G 0.34 tolerated(0.1) benign(0.012) TCGA-06-5416-01 2 37486784 37486784 A G PRKD3 Missense_Mutation p.V696A 0.29 tolerated(0.16) possibly_damaging(0.531) TCGA-06-5416-01 2 37600023 37600023 G T QPCT 3'UTR 0.21 TCGA-06-5416-01 2 37873780 37873780 C A CDC42EP3 5'UTR 0.58 TCGA-06-5416-01 2 38178979 38178979 C A RMDN2 Silent p.S207S 0.18 TCGA-06-5416-01 2 38179178 38179178 A G RMDN2 Missense_Mutation p.T274A 0.51 tolerated_low_confidence(0.12) benign(0.032) TCGA-06-5416-01 2 38179209 38179209 C T RMDN2 Missense_Mutation p.S284F 0.19 deleterious(0) possibly_damaging(0.827) TCGA-06-5416-01 2 38179252 38179252 C T RMDN2 Silent p.S298S 0.25 TCGA-06-5416-01 2 38298023 38298023 C T CYP1B1 Missense_Mutation p.D492N 0.25 tolerated(1) benign(0) TCGA-06-5416-01 2 38523698 38523698 C T ATL2 Intron 0.54 TCGA-06-5416-01 2 38797063 38797063 T G HNRNPLL Missense_Mutation p.K361T 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 2 38903119 38903119 G T GALM Nonsense_Mutation p.G86* 0.26 TCGA-06-5416-01 2 38916996 38916996 G A GALM Silent p.A198A 0.26 TCGA-06-5416-01 2 38975205 38975205 C A SRSF7 Nonsense_Mutation p.G186* 0.20 TCGA-06-5416-01 2 39006127 39006127 G A GEMIN6 5'UTR 0.23 TCGA-06-5416-01 2 39008770 39008770 G T GEMIN6 Missense_Mutation p.E80D 0.32 tolerated(0.23) benign(0.125) TCGA-06-5416-01 2 39285889 39285889 G T SOS1 Silent p.A90A 0.54 TCGA-06-5416-01 2 39406177 39406177 C T CDKL4 3'UTR 0.32 TCGA-06-5416-01 2 39485718 39485718 C T MAP4K3 Silent p.Q773Q 0.27 TCGA-06-5416-01 2 40342636 40342636 G A SLC8A1 Silent p.H893H 0.22 TCGA-06-5416-01 2 40655689 40655689 C T SLC8A1 Missense_Mutation p.E578K 0.34 deleterious(0.02) possibly_damaging(0.858) TCGA-06-5416-01 2 40656665 40656665 C A SLC8A1 Silent p.A252A 0.29 TCGA-06-5416-01 2 40656677 40656677 G A SLC8A1 Silent p.F248F 0.29 TCGA-06-5416-01 2 42557059 42557059 C T EML4 Silent p.V886V 0.59 TCGA-06-5416-01 2 42936090 42936090 C A MTA3 Missense_Mutation p.S460Y 0.25 tolerated(1) benign(0.381) TCGA-06-5416-01 2 42994537 42994537 C T HAAO 3'UTR 0.14 TCGA-06-5416-01 2 42997303 42997303 C A HAAO Missense_Mutation p.R155I 0.30 deleterious(0.04) benign(0.013) TCGA-06-5416-01 2 43783418 43783418 T C THADA Intron 0.32 TCGA-06-5416-01 2 43871859 43871859 G A PLEKHH2 Missense_Mutation p.R16Q 0.24 deleterious(0) possibly_damaging(0.76) TCGA-06-5416-01 2 43939404 43939404 C A PLEKHH2 Missense_Mutation p.S781Y 0.13 deleterious(0) probably_damaging(0.933) TCGA-06-5416-01 2 43969993 43969993 G A PLEKHH2 Missense_Mutation p.R1112Q 0.54 deleterious(0.03) possibly_damaging(0.65) TCGA-06-5416-01 2 43971006 43971006 G T PLEKHH2 Nonsense_Mutation p.E1145* 0.55 TCGA-06-5416-01 2 44021786 44021786 A G DYNC2LI1 Intron 0.53 TCGA-06-5416-01 2 44028016 44028016 C T DYNC2LI1 Missense_Mutation p.R231C 0.14 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 2 44028050 44028050 A G DYNC2LI1 Missense_Mutation p.D242G 0.16 tolerated(0.08) benign(0) TCGA-06-5416-01 2 44032359 44032359 G A DYNC2LI1 Missense_Mutation p.D323N 0.31 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 44099186 44099186 G A ABCG8 Missense_Mutation p.A346T 0.55 tolerated(0.11) possibly_damaging(0.505) TCGA-06-5416-01 2 44161948 44161948 A C LRPPRC Missense_Mutation p.I858M 0.61 tolerated(0.17) benign(0.037) TCGA-06-5416-01 2 44184583 44184583 T C LRPPRC Silent p.S530S 0.66 TCGA-06-5416-01 2 44428873 44428873 C T PPM1B Nonsense_Mutation p.R179* 0.29 TCGA-06-5416-01 2 44539834 44539834 G A SLC3A1 Missense_Mutation p.G481E 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 44547488 44547488 G A SLC3A1 Missense_Mutation p.D590N 0.57 tolerated(0.24) benign(0.014) TCGA-06-5416-01 2 44549932 44549932 A C PREPL Missense_Mutation p.I653S 0.29 deleterious(0) benign(0.18) TCGA-06-5416-01 2 44559625 44559625 G A PREPL Silent p.R442R 0.29 TCGA-06-5416-01 2 44970768 44970768 C T CAMKMT Nonsense_Mutation p.R211* 0.28 TCGA-06-5416-01 2 45169781 45169781 C T SIX3 Silent p.L180L 0.14 TCGA-06-5416-01 2 45778386 45778386 A G SRBD1 Missense_Mutation p.V518A 0.25 tolerated(0.07) benign(0.059) TCGA-06-5416-01 2 45808898 45808898 C T SRBD1 Silent p.G289G 0.18 TCGA-06-5416-01 2 45829132 45829132 C A SRBD1 Missense_Mutation p.K57N 0.27 tolerated_low_confidence(0.22) benign(0.009) TCGA-06-5416-01 2 45879582 45879582 G A PRKCE Missense_Mutation p.D115N 0.52 tolerated(0.43) benign(0.093) TCGA-06-5416-01 2 46207436 46207436 C T PRKCE Silent p.V203V 0.26 TCGA-06-5416-01 2 46583907 46583907 C T EPAS1 Silent p.C138C 0.43 TCGA-06-5416-01 2 46602972 46602972 C A EPAS1 Missense_Mutation p.L344M 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 46605806 46605806 C A EPAS1 Missense_Mutation p.P485H 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 46605868 46605868 G A EPAS1 Missense_Mutation p.A506T 0.24 tolerated(0.07) benign(0.051) TCGA-06-5416-01 2 46770303 46770303 C T RHOQ Missense_Mutation p.P40S 0.25 deleterious(0) probably_damaging(0.916) TCGA-06-5416-01 2 46815319 46815319 C T PIGF Intron 0.55 TCGA-06-5416-01 2 46986776 46986776 C T SOCS5 Silent p.L369L 0.11 TCGA-06-5416-01 2 46986855 46986855 G A SOCS5 Missense_Mutation p.E396K 0.06 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 2 47184044 47184044 G T TTC7A Missense_Mutation p.D139Y 0.32 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 2 47300892 47300892 C T TTC7A Missense_Mutation p.R803C 0.56 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 47387902 47387902 C A CALM2 3'UTR 0.44 TCGA-06-5416-01 2 47656991 47656991 G A MSH2 Missense_Mutation p.R396K 0.24 tolerated(0.18) benign(0.079) TCGA-06-5416-01 2 47707989 47707989 G T MSH2 Missense_Mutation p.K871N 0.52 deleterious(0.04) probably_damaging(0.91) TCGA-06-5416-01 2 48026375 48026375 C A MSH6 Missense_Mutation p.S418Y 0.28 deleterious(0) probably_damaging(0.921) TCGA-06-5416-01 2 48026567 48026567 G A MSH6 Missense_Mutation p.R482Q 0.53 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 2 48027354 48027354 G T MSH6 Missense_Mutation p.E744D 0.06 tolerated(0.26) probably_damaging(0.996) TCGA-06-5416-01 2 48030686 48030686 G A MSH6 Silent p.T1100T 0.20 TCGA-06-5416-01 2 48040451 48040451 C A FBXO11 Missense_Mutation p.D717Y 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 2 48066081 48066081 G A FBXO11 Silent p.F168F 0.27 TCGA-06-5416-01 2 48066825 48066825 G T FBXO11 Missense_Mutation p.L106I 0.29 tolerated_low_confidence(0.4) benign(0.003) TCGA-06-5416-01 2 48586287 48586287 G A FOXN2 Splice_Site p.X213_splice 0.26 TCGA-06-5416-01 2 48685340 48685340 G T PPP1R21 Nonsense_Mutation p.E117* 0.23 TCGA-06-5416-01 2 48915157 48915157 G A LHCGR Silent p.A593A 0.56 TCGA-06-5416-01 2 49381496 49381496 G A FSHR Missense_Mutation p.R21W 0.28 deleterious(0.04) benign(0.007) TCGA-06-5416-01 2 50282158 50282158 G A NRXN1 Missense_Mutation p.A1288V 0.30 tolerated(0.08) possibly_damaging(0.839) TCGA-06-5416-01 2 50724786 50724786 C T NRXN1 Missense_Mutation p.R895Q 0.14 deleterious(0.01) possibly_damaging(0.482) TCGA-06-5416-01 2 50724790 50724790 C A NRXN1 Nonsense_Mutation p.E894* 0.15 TCGA-06-5416-01 2 50780076 50780076 C T NRXN1 Missense_Mutation p.A510T 0.25 tolerated(0.51) benign(0.165) TCGA-06-5416-01 2 51254981 51254981 C T NRXN1 Missense_Mutation p.R144H 0.30 tolerated(0.11) possibly_damaging(0.837) TCGA-06-5416-01 2 51255201 51255201 C T NRXN1 Missense_Mutation p.D71N 0.52 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 2 51255221 51255221 C T NRXN1 Missense_Mutation p.R64H 0.42 tolerated(0.17) benign(0.002) TCGA-06-5416-01 2 53927569 53927569 C T ASB3 Silent p.S394S 0.29 TCGA-06-5416-01 2 53992610 53992610 G A ASB3 Nonsense_Mutation p.R69* 0.24 TCGA-06-5416-01 2 54040190 54040190 C T ERLEC1 Silent p.D402D 0.16 TCGA-06-5416-01 2 54135500 54135500 C T PSME4 Missense_Mutation p.R914Q 0.30 tolerated(0.08) benign(0.126) TCGA-06-5416-01 2 54858527 54858527 G A SPTBN1 Missense_Mutation p.E1115K 0.26 tolerated(0.24) benign(0.016) TCGA-06-5416-01 2 54872404 54872404 C T SPTBN1 Silent p.I1436I 0.22 TCGA-06-5416-01 2 54895526 54895526 C A SPTBN1 Silent p.A2305A 0.34 TCGA-06-5416-01 2 55252346 55252346 C A RTN4 Missense_Mutation p.E963D 0.29 deleterious(0.01) benign(0.055) TCGA-06-5416-01 2 55252930 55252930 C A RTN4 Nonsense_Mutation p.E769* 0.32 TCGA-06-5416-01 2 55253231 55253231 T G RTN4 Missense_Mutation p.K668N 0.26 deleterious(0.02) benign(0.25) TCGA-06-5416-01 2 55253671 55253671 C T RTN4 Missense_Mutation p.A522T 0.28 tolerated(0.67) benign(0.003) TCGA-06-5416-01 2 55813777 55813777 G T SMEK2 Missense_Mutation p.L365I 0.52 deleterious(0.02) possibly_damaging(0.566) TCGA-06-5416-01 2 56103824 56103824 G T EFEMP1 Missense_Mutation p.L272I 0.27 tolerated(0.38) benign(0.012) TCGA-06-5416-01 2 56420278 56420278 G T CCDC85A Nonsense_Mutation p.E315* 0.25 TCGA-06-5416-01 2 58366881 58366881 T G VRK2 Missense_Mutation p.L313V 0.32 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 2 58386772 58386772 C T VRK2 Missense_Mutation p.R491C 0.49 deleterious_low_confidence(0) benign(0.2) TCGA-06-5416-01 2 60687749 60687749 G A BCL11A Silent p.G766G 0.60 TCGA-06-5416-01 2 61024380 61024380 C A PAPOLG 3'UTR 0.49 TCGA-06-5416-01 2 61258703 61258703 G T PEX13 Missense_Mutation p.G81V 0.20 tolerated(0.08) benign(0.424) TCGA-06-5416-01 2 61304180 61304180 G A KIAA1841 Missense_Mutation p.R186H 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 61304272 61304272 G T KIAA1841 Missense_Mutation p.D217Y 0.30 deleterious(0.02) possibly_damaging(0.771) TCGA-06-5416-01 2 61331022 61331022 G A KIAA1841 Missense_Mutation p.R467H 0.29 tolerated(0.61) benign(0) TCGA-06-5416-01 2 61441400 61441400 G A USP34 Missense_Mutation p.T2826I 0.28 tolerated(0.06) benign(0.218) TCGA-06-5416-01 2 61516001 61516001 G T USP34 Missense_Mutation p.D1520E 0.57 tolerated(0.1) possibly_damaging(0.621) TCGA-06-5416-01 2 61528250 61528250 C T USP34 Missense_Mutation p.E1322K 0.32 tolerated(0.18) benign(0.002) TCGA-06-5416-01 2 61575942 61575942 C T USP34 Silent p.E541E 0.34 TCGA-06-5416-01 2 61647922 61647922 A G USP34 Silent p.H30H 0.26 TCGA-06-5416-01 2 61708340 61708340 C T XPO1 Missense_Mutation p.D1017N 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 61708347 61708347 A G XPO1 Silent p.H1014H 0.27 TCGA-06-5416-01 2 61710217 61710217 A G XPO1 Missense_Mutation p.I896T 0.27 tolerated(0.09) probably_damaging(0.994) TCGA-06-5416-01 2 62450472 62450472 A T B3GNT2 Missense_Mutation p.M373L 0.34 tolerated(0.6) benign(0.145) TCGA-06-5416-01 2 63053310 63053310 T C EHBP1 Missense_Mutation p.V134A 0.18 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 2 63176128 63176128 C T EHBP1 Missense_Mutation p.S751F 0.20 deleterious_low_confidence(0.01) benign(0.369) TCGA-06-5416-01 2 63176148 63176148 T G EHBP1 Missense_Mutation p.L758V 0.22 tolerated_low_confidence(0.3) benign(0.003) TCGA-06-5416-01 2 63217906 63217906 A G EHBP1 Silent p.P959P 0.25 TCGA-06-5416-01 2 63283356 63283356 G A OTX1 Missense_Mutation p.A324T 0.25 deleterious(0.04) unknown(0) TCGA-06-5416-01 2 63609159 63609159 A G WDPCP Silent p.Y502Y 0.22 TCGA-06-5416-01 2 63631752 63631752 A G WDPCP Missense_Mutation p.V289A 0.55 tolerated(0.77) benign(0.019) TCGA-06-5416-01 2 63665047 63665047 C A WDPCP Intron 0.57 TCGA-06-5416-01 2 63833099 63833099 C A MDH1 Silent p.I290I 0.30 TCGA-06-5416-01 2 64112910 64112910 C A UGP2 Missense_Mutation p.L255M 0.55 deleterious(0.04) possibly_damaging(0.902) TCGA-06-5416-01 2 64139726 64139726 C T VPS54 Missense_Mutation p.R831Q 0.31 tolerated(0.17) benign(0.305) TCGA-06-5416-01 2 64779377 64779377 G T AFTPH Nonsense_Mutation p.E257* 0.32 TCGA-06-5416-01 2 64796754 64796754 T C AFTPH Intron 0.32 TCGA-06-5416-01 2 64863516 64863516 G A SERTAD2 Missense_Mutation p.P164S 0.54 tolerated(0.3) benign(0.006) TCGA-06-5416-01 2 65243773 65243773 G A SLC1A4 Missense_Mutation p.A334T 0.31 tolerated(1) benign(0) TCGA-06-5416-01 2 65543968 65543968 G T SPRED2 Missense_Mutation p.T163N 0.27 tolerated(0.33) benign(0.001) TCGA-06-5416-01 2 67631984 67631984 T G ETAA1 Missense_Mutation p.Y724D 0.31 tolerated(0.15) benign(0.06) TCGA-06-5416-01 2 68365879 68365879 T G WDR92 Missense_Mutation p.N210H 0.24 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 2 68385189 68385189 C T PNO1 Silent p.G41G 0.37 TCGA-06-5416-01 2 68413751 68413751 C T PPP3R1 Missense_Mutation p.G105D 0.28 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 2 68521130 68521130 A G CNRIP1 Missense_Mutation p.V120A 0.22 tolerated(0.13) benign(0.066) TCGA-06-5416-01 2 68882279 68882279 C A PROKR1 Nonsense_Mutation p.C251* 0.06 TCGA-06-5416-01 2 68882362 68882362 G A PROKR1 Missense_Mutation p.R279H 0.23 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 2 69002321 69002321 C T ARHGAP25 Intron 0.28 TCGA-06-5416-01 2 69009403 69009403 C T ARHGAP25 Silent p.I100I 0.26 TCGA-06-5416-01 2 69034454 69034454 C T ARHGAP25 Silent p.F172F 0.27 TCGA-06-5416-01 2 69049546 69049546 A G ARHGAP25 Silent p.V425V 0.31 TCGA-06-5416-01 2 69093522 69093522 C A BMP10 Missense_Mutation p.E172D 0.26 tolerated(0.28) benign(0.019) TCGA-06-5416-01 2 69180030 69180030 C T GKN2 5'UTR 0.22 TCGA-06-5416-01 2 69420512 69420512 C T ANTXR1 Missense_Mutation p.R467C 0.29 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 2 69555456 69555456 C A GFPT1 Missense_Mutation p.D614Y 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 69565660 69565660 A G GFPT1 Missense_Mutation p.V414A 0.29 deleterious(0.02) probably_damaging(0.977) TCGA-06-5416-01 2 69577257 69577257 G A GFPT1 Silent p.F266F 0.49 TCGA-06-5416-01 2 69590694 69590694 C T GFPT1 Missense_Mutation p.R111H 0.19 deleterious(0.01) probably_damaging(0.982) TCGA-06-5416-01 2 69590794 69590794 C A GFPT1 Missense_Mutation p.D78Y 0.21 tolerated(0.1) benign(0.098) TCGA-06-5416-01 2 69757167 69757167 A G AAK1 Missense_Mutation p.Y282H 0.30 tolerated(0.07) unknown(0) TCGA-06-5416-01 2 70046433 70046433 C A ANXA4 Missense_Mutation p.S249Y 0.29 deleterious(0) benign(0.429) TCGA-06-5416-01 2 70164468 70164468 G A MXD1 Silent p.R140R 0.22 TCGA-06-5416-01 2 70315393 70315393 C A PCBP1 Missense_Mutation p.S173Y 0.20 deleterious(0.02) benign(0.035) TCGA-06-5416-01 2 70408341 70408341 C T C2orf42 Silent p.E259E 0.61 TCGA-06-5416-01 2 70443877 70443877 C A TIA1 Intron 0.28 TCGA-06-5416-01 2 70503936 70503936 C T PCYOX1 Silent p.I310I 0.33 TCGA-06-5416-01 2 70504613 70504613 G T PCYOX1 3'UTR 0.47 TCGA-06-5416-01 2 71014833 71014833 G T FIGLA Missense_Mutation p.T111N 0.26 deleterious(0) probably_damaging(0.93) TCGA-06-5416-01 2 71044216 71044216 T G CLEC4F Missense_Mutation p.E99D 0.58 deleterious(0.04) benign(0.21) TCGA-06-5416-01 2 71206811 71206811 C T ANKRD53 Silent p.F146F 0.27 TCGA-06-5416-01 2 71211744 71211744 G A ANKRD53 Missense_Mutation p.E303K 0.24 tolerated(0.15) benign(0.221) TCGA-06-5416-01 2 71211805 71211805 G A ANKRD53 Missense_Mutation p.G323D 0.49 tolerated(0.66) benign(0.016) TCGA-06-5416-01 2 71297677 71297677 G T NAGK Missense_Mutation p.K71N 0.23 tolerated(0.11) benign(0.03) TCGA-06-5416-01 2 7137057 7137057 G A RNF144A 5'UTR 0.21 TCGA-06-5416-01 2 71615806 71615806 G A ZNF638 Intron 0.22 TCGA-06-5416-01 2 71629211 71629212 - A ZNF638 Frame_Shift_Ins p.A944Gfs*7 0.26 TCGA-06-5416-01 2 71709075 71709075 G T DYSF Missense_Mutation p.D72Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 2 71892407 71892407 G A DYSF Missense_Mutation p.D1764N 0.27 deleterious(0.04) benign(0.002) TCGA-06-5416-01 2 72362546 72362546 G T CYP26B1 Silent p.V144V 0.27 TCGA-06-5416-01 2 72742235 72742235 C A EXOC6B Missense_Mutation p.E312D 0.27 tolerated(0.09) probably_damaging(0.978) TCGA-06-5416-01 2 73188280 73188280 G A SFXN5 Missense_Mutation p.L309F 0.56 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 2 73198782 73198782 G A SFXN5 Missense_Mutation p.R220W 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 73315307 73315307 C T RAB11FIP5 Missense_Mutation p.R480Q 0.23 tolerated(0.08) probably_damaging(0.99) TCGA-06-5416-01 2 73316519 73316519 C T RAB11FIP5 Intron 0.31 TCGA-06-5416-01 2 73450653 73450653 C T SMYD5 Silent p.I292I 0.59 TCGA-06-5416-01 2 73491178 73491178 G T FBXO41 Missense_Mutation p.L604M 0.27 tolerated(0.07) probably_damaging(0.997) TCGA-06-5416-01 2 73651599 73651599 G A ALMS1 Missense_Mutation p.R269Q 0.63 benign(0.049) TCGA-06-5416-01 2 73680437 73680437 A T ALMS1 Missense_Mutation p.E2260D 0.30 probably_damaging(0.998) TCGA-06-5416-01 2 73868164 73868164 G A NAT8 Nonsense_Mutation p.Q198* 0.36 TCGA-06-5416-01 2 73868779 73868779 C T NAT8 5'UTR 0.25 TCGA-06-5416-01 2 73868800 73868800 C T NAT8 5'UTR 0.28 TCGA-06-5416-01 2 73957786 73957786 T G TPRKB Missense_Mutation p.E114D 0.20 tolerated(0.57) benign(0.001) TCGA-06-5416-01 2 74040647 74040647 G A C2orf78 Silent p.R47R 0.56 TCGA-06-5416-01 2 74040671 74040671 C T C2orf78 Silent p.S55S 0.59 TCGA-06-5416-01 2 74042596 74042596 G A C2orf78 Missense_Mutation p.A416T 0.27 tolerated(0.22) benign(0.034) TCGA-06-5416-01 2 74043473 74043473 C T C2orf78 Missense_Mutation p.S708F 0.61 tolerated(0.05) benign(0.067) TCGA-06-5416-01 2 74043656 74043656 G A C2orf78 Missense_Mutation p.R769Q 0.33 tolerated(1) benign(0.004) TCGA-06-5416-01 2 74044061 74044061 T G C2orf78 Missense_Mutation p.F904C 0.47 deleterious(0.05) probably_damaging(0.971) TCGA-06-5416-01 2 74459661 74459661 G A SLC4A5 Silent p.I903I 0.28 TCGA-06-5416-01 2 74474175 74474175 C T SLC4A5 Missense_Mutation p.A683T 0.50 tolerated(0.31) probably_damaging(0.954) TCGA-06-5416-01 2 74477584 74477584 G T SLC4A5 Missense_Mutation p.F513L 0.31 deleterious(0.01) possibly_damaging(0.612) TCGA-06-5416-01 2 74491339 74491339 C T SLC4A5 Missense_Mutation p.R217H 0.61 tolerated(0.51) probably_damaging(1) TCGA-06-5416-01 2 74593597 74593597 C A DCTN1 Missense_Mutation p.A873S 0.33 tolerated(0.24) benign(0.061) TCGA-06-5416-01 2 74594985 74594985 G T DCTN1 Silent p.L674L 0.25 TCGA-06-5416-01 2 74701868 74701868 G A CCDC142 Silent p.S679S 0.15 TCGA-06-5416-01 2 74734206 74734206 G A PCGF1 Silent p.F54F 0.48 TCGA-06-5416-01 2 74734257 74734257 C A PCGF1 Missense_Mutation p.K37N 0.25 deleterious(0.02) possibly_damaging(0.543) TCGA-06-5416-01 2 74745448 74745448 G T DQX1 3'UTR 0.40 TCGA-06-5416-01 2 74756371 74756371 A G AUP1 Missense_Mutation p.V76A 0.30 tolerated(0.5) benign(0.327) TCGA-06-5416-01 2 74757166 74757166 C A HTRA2 Silent p.G11G 0.51 TCGA-06-5416-01 2 74777381 74777381 G A LOXL3 Silent p.H136H 0.30 TCGA-06-5416-01 2 74783508 74783508 G A DOK1 Missense_Mutation p.G238E 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 74784218 74784218 G A DOK1 Missense_Mutation p.V475I 0.24 tolerated_low_confidence(0.11) benign(0.002) TCGA-06-5416-01 2 74789468 74789468 A C M1AP Missense_Mutation p.V386G 0.53 deleterious(0) probably_damaging(0.929) TCGA-06-5416-01 2 74902898 74902898 G A SEMA4F Missense_Mutation p.R502H 0.59 tolerated(0.56) benign(0.001) TCGA-06-5416-01 2 75115109 75115109 C A HK2 Missense_Mutation p.L767I 0.30 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 2 75116439 75116439 G A HK2 Missense_Mutation p.D815N 0.60 deleterious(0.01) benign(0.068) TCGA-06-5416-01 2 75280865 75280865 G A TACR1 Missense_Mutation p.T201I 0.31 tolerated(1) benign(0.215) TCGA-06-5416-01 2 75720666 75720666 G T EVA1A Missense_Mutation p.A52D 0.29 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 2 75893142 75893142 G T GCFC2 Missense_Mutation p.S714Y 0.35 tolerated(0.25) possibly_damaging(0.646) TCGA-06-5416-01 2 77746887 77746887 C T LRRTM4 Silent p.K36K 0.58 TCGA-06-5416-01 2 79314745 79314745 C T REG1B 5'UTR 0.69 TCGA-06-5416-01 2 79386636 79386636 C T REG3A 5'UTR 0.16 TCGA-06-5416-01 2 80136753 80136753 G A CTNNA2 Missense_Mutation p.E296K 0.27 deleterious(0.05) probably_damaging(0.968) TCGA-06-5416-01 2 80529976 80529976 A G LRRTM1 Silent p.C323C 0.51 TCGA-06-5416-01 2 85049031 85049031 C A TRABD2A 3'UTR 0.19 TCGA-06-5416-01 2 85533476 85533476 C A TCF7L1 Silent p.I379I 0.24 TCGA-06-5416-01 2 85570403 85570403 G T RETSAT Missense_Mutation p.L599I 0.17 deleterious(0.01) possibly_damaging(0.881) TCGA-06-5416-01 2 85598667 85598667 G A ELMOD3 Missense_Mutation p.E197K 0.26 deleterious(0.02) possibly_damaging(0.834) TCGA-06-5416-01 2 85617262 85617262 G T ELMOD3 Nonsense_Mutation p.E273* 0.48 TCGA-06-5416-01 2 85662888 85662888 C T SH2D6 Missense_Mutation p.R118W 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 85826708 85826708 G T TMEM150A Missense_Mutation p.L172M 0.24 tolerated(0.06) benign(0.02) TCGA-06-5416-01 2 85827098 85827098 C T TMEM150A Silent p.Q104Q 0.24 TCGA-06-5416-01 2 85850876 85850876 A G USP39 Missense_Mutation p.I181V 0.30 tolerated(0.77) benign(0.268) TCGA-06-5416-01 2 85922529 85922529 G A GNLY Missense_Mutation p.A47T 0.24 tolerated(0.11) probably_damaging(0.956) TCGA-06-5416-01 2 86255831 86255831 G T POLR1A Missense_Mutation p.L1595M 0.55 deleterious(0.02) probably_damaging(0.984) TCGA-06-5416-01 2 86257424 86257424 G A POLR1A Silent p.G1558G 0.24 TCGA-06-5416-01 2 86258548 86258548 G A POLR1A Missense_Mutation p.P1495S 0.58 tolerated(0.71) benign(0.002) TCGA-06-5416-01 2 86325880 86325880 G T POLR1A Missense_Mutation p.L96M 0.23 deleterious(0.05) probably_damaging(1) TCGA-06-5416-01 2 86355071 86355071 G A PTCD3 Silent p.S368S 0.57 TCGA-06-5416-01 2 86357847 86357847 G T PTCD3 Missense_Mutation p.K408N 0.28 deleterious(0.01) benign(0.006) TCGA-06-5416-01 2 86371322 86371322 G A IMMT 3'UTR 0.30 TCGA-06-5416-01 2 86393671 86393671 G A IMMT Missense_Mutation p.A251V 0.60 tolerated(0.14) benign(0.217) TCGA-06-5416-01 2 86406610 86406610 G T IMMT Silent p.L85L 0.35 TCGA-06-5416-01 2 86437730 86437730 G A MRPL35 Missense_Mutation p.R169Q 0.23 deleterious(0.01) benign(0.225) TCGA-06-5416-01 2 86684136 86684136 G A KDM3A Missense_Mutation p.R262H 0.21 deleterious(0) possibly_damaging(0.803) TCGA-06-5416-01 2 86716527 86716527 G A KDM3A Missense_Mutation p.G1134R 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 86849787 86849787 A G RNF103-CHMP3 Intron 0.22 TCGA-06-5416-01 2 87213959 87213959 G A RGPD1 Missense_Mutation p.E1305K 0.35 tolerated(0.11) benign(0.057) TCGA-06-5416-01 2 87214165 87214165 T C RGPD1 Silent p.D1373D 0.26 TCGA-06-5416-01 2 88082320 88082320 C T RGPD2 Missense_Mutation p.S1408N 0.22 tolerated(0.68) benign(0.383) TCGA-06-5416-01 2 88472618 88472618 G T THNSL2 5'UTR 0.31 TCGA-06-5416-01 2 88478395 88478395 C T THNSL2 Missense_Mutation p.S222L 0.55 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 2 88482275 88482275 G T THNSL2 Missense_Mutation p.R287L 0.24 tolerated(0.2) benign(0.115) TCGA-06-5416-01 2 8871418 8871418 G A KIDINS220 Missense_Mutation p.S1583L 0.19 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 2 8874831 8874831 T G KIDINS220 Missense_Mutation p.K1257T 0.24 tolerated(0.09) possibly_damaging(0.756) TCGA-06-5416-01 2 8877007 8877007 C T KIDINS220 Silent p.T1236T 0.28 TCGA-06-5416-01 2 88888279 88888279 G A EIF2AK3 Missense_Mutation p.H436Y 0.21 deleterious(0.01) benign(0.433) TCGA-06-5416-01 2 89104018 89104018 C T ANKRD36BP2 RNA 0.17 TCGA-06-5416-01 2 89111140 89111140 C A MIR4436A 5'Flank 0.11 TCGA-06-5416-01 2 8916907 8916907 C A KIDINS220 Missense_Mutation p.R940I 0.55 deleterious(0) possibly_damaging(0.853) TCGA-06-5416-01 2 89278128 89278128 G T IGKV3-7 Silent p.I69I 0.50 TCGA-06-5416-01 2 89339878 89339878 G A IGKV1-12 Missense_Mutation p.A65V 0.18 tolerated(0.08) benign(0.045) TCGA-06-5416-01 2 89399389 89399389 A C IGKV1-16 Missense_Mutation p.F105C 0.23 deleterious(0.04) benign(0.045) TCGA-06-5416-01 2 89399568 89399568 A C IGKV1-16 Missense_Mutation p.C45W 0.28 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 2 89459286 89459286 C A IGKV6-21 Silent p.L97L 0.25 TCGA-06-5416-01 2 89459381 89459381 G T IGKV6-21 Missense_Mutation p.L66I 0.31 deleterious(0.05) probably_damaging(0.912) TCGA-06-5416-01 2 89544385 89544385 T C IGKV2-30 Missense_Mutation p.D80G 0.07 tolerated(0.33) benign(0.004) TCGA-06-5416-01 2 95481727 95481727 C T ANKRD20A8P RNA 0.25 TCGA-06-5416-01 2 95713709 95713709 C T MAL Silent p.F33F 0.35 TCGA-06-5416-01 2 95815247 95815247 C T ZNF514 Missense_Mutation p.S328N 0.07 tolerated(0.25) benign(0.074) TCGA-06-5416-01 2 95847229 95847229 G T ZNF2 Missense_Mutation p.R219I 0.32 deleterious(0.01) possibly_damaging(0.85) TCGA-06-5416-01 2 95950857 95950857 C T PROM2 Silent p.L623L 0.37 TCGA-06-5416-01 2 9599693 9599693 G T CPSF3 Missense_Mutation p.D578Y 0.50 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 2 96047343 96047343 G A KCNIP3 Splice_Site p.X150_splice 0.28 TCGA-06-5416-01 2 9633879 9633879 A T ADAM17 Missense_Mutation p.F664I 0.21 tolerated(0.17) possibly_damaging(0.574) TCGA-06-5416-01 2 9633917 9633917 C T ADAM17 Missense_Mutation p.R651Q 0.23 deleterious(0.02) possibly_damaging(0.885) TCGA-06-5416-01 2 96458017 96458017 C T AC008268.2 RNA 0.18 TCGA-06-5416-01 2 96549964 96549964 C T ANKRD36C Silent p.S101S 0.26 TCGA-06-5416-01 2 96555590 96555590 C T ANKRD36C Silent p.P393P 0.21 TCGA-06-5416-01 2 96587398 96587398 C T ANKRD36C Silent p.S734S 0.34 TCGA-06-5416-01 2 96689958 96689958 C T GPAT2 Silent p.P599P 0.13 TCGA-06-5416-01 2 96698058 96698058 G A GPAT2 Missense_Mutation p.P17L 0.18 tolerated_low_confidence(0.71) unknown(0) TCGA-06-5416-01 2 96789717 96789717 C T ASTL Missense_Mutation p.G390R 0.29 tolerated_low_confidence(0.24) benign(0.002) TCGA-06-5416-01 2 96799192 96799192 C A ASTL Missense_Mutation p.D143Y 0.40 deleterious(0) probably_damaging(1) TCGA-06-5416-01 2 96858865 96858865 G A STARD7 Missense_Mutation p.R232W 0.17 deleterious(0.03) possibly_damaging(0.808) TCGA-06-5416-01 2 96954811 96954811 G A SNRNP200 Silent p.I1046I 0.50 TCGA-06-5416-01 2 96959054 96959054 C A SNRNP200 Missense_Mutation p.S679I 0.28 deleterious(0) probably_damaging(0.966) TCGA-06-5416-01 2 96965087 96965087 G A SNRNP200 Missense_Mutation p.R237C 0.22 deleterious(0.04) benign(0.013) TCGA-06-5416-01 2 96968973 96968973 T C SNRNP200 Missense_Mutation p.Y102C 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 2 97007316 97007316 C T NCAPH Intron 0.26 TCGA-06-5416-01 2 97213215 97213215 T C ARID5A Silent p.A27A 0.17 TCGA-06-5416-01 2 97297176 97297176 G A KANSL3 Missense_Mutation p.P87S 0.27 tolerated(0.05) benign(0.067) TCGA-06-5416-01 2 97405663 97405663 G A LMAN2L Missense_Mutation p.P39S 0.47 tolerated(0.84) possibly_damaging(0.737) TCGA-06-5416-01 2 97427246 97427246 C A CNNM4 Silent p.L170L 0.25 TCGA-06-5416-01 2 97527159 97527159 G A SEMA4C Missense_Mutation p.A569V 0.25 tolerated(0.85) benign(0.021) TCGA-06-5416-01 2 97533627 97533627 G A SEMA4C 5'UTR 0.37 TCGA-06-5416-01 2 97757244 97757244 G A FAHD2B Missense_Mutation p.T67M 0.25 tolerated(0.11) benign(0.001) TCGA-06-5416-01 2 97911153 97911153 G A ANKRD36 Missense_Mutation p.R1610H 0.17 tolerated(0.23) benign(0.002) TCGA-06-5416-01 2 97911311 97911311 C T ANKRD36 Missense_Mutation p.R1663C 0.12 tolerated(1) benign(0) TCGA-06-5416-01 2 97911350 97911350 C A ANKRD36 Missense_Mutation p.L1676I 0.22 deleterious(0) possibly_damaging(0.693) TCGA-06-5416-01 2 98195469 98195469 C A ANKRD36B RNA 0.22 TCGA-06-5416-01 2 98351886 98351886 G A ZAP70 Missense_Mutation p.G419D 0.30 tolerated(0.24) possibly_damaging(0.499) TCGA-06-5416-01 2 98354533 98354533 G A ZAP70 Missense_Mutation p.E567K 0.28 tolerated(0.05) benign(0.011) TCGA-06-5416-01 2 98373602 98373602 G A TMEM131 Missense_Mutation p.S1871L 0.24 tolerated_low_confidence(0.07) probably_damaging(0.978) TCGA-06-5416-01 2 98422076 98422076 G A TMEM131 Nonsense_Mutation p.R716* 0.31 TCGA-06-5416-01 2 98744834 98744834 G A VWA3B Missense_Mutation p.A279T 0.32 tolerated(0.43) benign(0.034) TCGA-06-5416-01 2 98779326 98779326 G A VWA3B Missense_Mutation p.R334K 0.19 deleterious(0.01) probably_damaging(0.936) TCGA-06-5416-01 2 99012699 99012699 C T CNGA3 Missense_Mutation p.L356F 0.27 tolerated(0.56) benign(0.17) TCGA-06-5416-01 2 99013037 99013037 C T CNGA3 Silent p.I468I 0.36 TCGA-06-5416-01 2 99013815 99013815 C T CNGA3 3'UTR 0.45 TCGA-06-5416-01 2 99154383 99154383 G T INPP4A Missense_Mutation p.E175D 0.18 tolerated(0.18) benign(0.015) TCGA-06-5416-01 2 99234742 99234742 C A UNC50 Missense_Mutation p.S252Y 0.68 tolerated(1) benign(0.005) TCGA-06-5416-01 2 99439632 99439632 G A KIAA1211L Silent p.G368G 0.50 TCGA-06-5416-01 2 99443602 99443602 C T KIAA1211L Missense_Mutation p.D191N 0.28 tolerated(0.17) possibly_damaging(0.741) TCGA-06-5416-01 2 99454686 99454686 C T KIAA1211L Silent p.S45S 0.27 TCGA-06-5416-01 2 99725409 99725409 G A TSGA10 Missense_Mutation p.R33C 0.51 tolerated(0.05) benign(0.207) TCGA-06-5416-01 2 99907852 99907852 C A LYG1 Missense_Mutation p.D61Y 0.25 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 2 99980315 99980315 G A EIF5B Missense_Mutation p.R376H 0.59 possibly_damaging(0.522) TCGA-06-5416-01 3 100105671 100105671 C A TOMM70A Missense_Mutation p.R159I 0.48 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 100105703 100105703 C A TOMM70A Missense_Mutation p.K148N 0.47 tolerated(0.52) benign(0.001) TCGA-06-5416-01 3 100170594 100170594 A G LNP1 Missense_Mutation p.D63G 0.09 tolerated(0.09) possibly_damaging(0.641) TCGA-06-5416-01 3 100328624 100328624 G A GPR128 5'UTR 0.23 TCGA-06-5416-01 3 100387842 100387842 G A GPR128 Missense_Mutation p.A677T 0.39 tolerated(0.06) possibly_damaging(0.467) TCGA-06-5416-01 3 100387898 100387898 T C GPR128 Silent p.D695D 0.27 TCGA-06-5416-01 3 100413752 100413752 A G GPR128 Silent p.P767P 0.17 TCGA-06-5416-01 3 100471749 100471749 G A ABI3BP Silent p.D957D 0.20 TCGA-06-5416-01 3 100605110 100605110 G A ABI3BP Silent p.I180I 0.25 TCGA-06-5416-01 3 100605153 100605153 C T ABI3BP Missense_Mutation p.R166H 0.13 deleterious(0) possibly_damaging(0.522) TCGA-06-5416-01 3 10084315 10084315 C A FANCD2 Missense_Mutation p.L286I 0.26 deleterious(0) probably_damaging(0.923) TCGA-06-5416-01 3 100994534 100994534 C T IMPG2 Silent p.E213E 0.22 TCGA-06-5416-01 3 101051634 101051634 G T SENP7 Silent p.I851I 0.18 TCGA-06-5416-01 3 101060510 101060510 C T SENP7 Silent p.R740R 0.20 TCGA-06-5416-01 3 10122827 10122827 G T FANCD2 Missense_Mutation p.R1007I 0.25 deleterious(0.04) possibly_damaging(0.713) TCGA-06-5416-01 3 10123036 10123036 G A FANCD2 Missense_Mutation p.A1038T 0.05 tolerated(0.61) benign(0.005) TCGA-06-5416-01 3 101284068 101284069 - A TRMT10C Frame_Shift_Ins p.E151Gfs*20 0.10 TCGA-06-5416-01 3 101298645 101298645 G A PCNP Missense_Mutation p.E26K 0.24 tolerated_low_confidence(0.19) possibly_damaging(0.765) TCGA-06-5416-01 3 101383978 101383978 C A ZBTB11 Nonsense_Mutation p.E485* 0.21 TCGA-06-5416-01 3 101443515 101443515 G A CEP97 5'UTR 0.15 TCGA-06-5416-01 3 10146397 10146397 C T FANCD2OS Missense_Mutation p.R21Q 0.25 tolerated(0.1) benign(0.004) TCGA-06-5416-01 3 101540396 101540396 G A NXPE3 Silent p.A426A 0.20 TCGA-06-5416-01 3 101540512 101540512 G A NXPE3 Missense_Mutation p.R465Q 0.18 deleterious(0.04) benign(0.011) TCGA-06-5416-01 3 102183077 102183077 G A ZPLD1 Missense_Mutation p.R264Q 0.44 tolerated(0.27) benign(0.329) TCGA-06-5416-01 3 10327557 10327557 G A GHRL 3'UTR 0.19 TCGA-06-5416-01 3 10382251 10382251 C T ATP2B2 Missense_Mutation p.E1019K 0.28 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 3 10443986 10443986 C A ATP2B2 Missense_Mutation p.E148D 0.26 tolerated(0.2) benign(0.004) TCGA-06-5416-01 3 105260500 105260500 C T ALCAM Silent p.S294S 0.22 TCGA-06-5416-01 3 105377883 105377883 G A CBLB Silent p.V960V 0.20 TCGA-06-5416-01 3 105452955 105452955 G T CBLB Silent p.G367G 0.21 TCGA-06-5416-01 3 107097045 107097045 C A CCDC54 Missense_Mutation p.S204Y 0.46 deleterious(0.01) benign(0.346) TCGA-06-5416-01 3 107492213 107492213 G T BBX Nonsense_Mutation p.E549* 0.39 TCGA-06-5416-01 3 107941083 107941083 G T IFT57 Silent p.V29V 0.19 TCGA-06-5416-01 3 108100374 108100374 C A MYH15 3'UTR 0.16 TCGA-06-5416-01 3 108107881 108107881 C T MYH15 Missense_Mutation p.R1844H 0.38 deleterious(0.04) benign(0.043) TCGA-06-5416-01 3 108129491 108129491 G A MYH15 Silent p.N1498N 0.18 TCGA-06-5416-01 3 108163667 108163667 G T MYH15 Missense_Mutation p.F845L 0.46 deleterious(0.04) possibly_damaging(0.626) TCGA-06-5416-01 3 108373080 108373080 G T DZIP3 Missense_Mutation p.D708Y 0.44 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-06-5416-01 3 108391459 108391459 G A DZIP3 Missense_Mutation p.V849I 0.07 tolerated(0.17) benign(0.001) TCGA-06-5416-01 3 108476127 108476127 G A RETNLB 5'UTR 0.23 TCGA-06-5416-01 3 108672519 108672519 G T GUCA1C Missense_Mutation p.P31T 0.47 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 3 108724083 108724083 G A MORC1 Missense_Mutation p.A616V 0.50 tolerated(1) benign(0) TCGA-06-5416-01 3 108819310 108819310 G A MORC1 Silent p.L90L 0.38 TCGA-06-5416-01 3 109027921 109027921 G A DPPA2 Silent p.I116I 0.21 TCGA-06-5416-01 3 109047845 109047845 A G DPPA4 Missense_Mutation p.V257A 0.45 deleterious(0) possibly_damaging(0.872) TCGA-06-5416-01 3 11067557 11067557 C T SLC6A1 Silent p.V316V 0.21 TCGA-06-5416-01 3 11070520 11070520 G A SLC6A1 Missense_Mutation p.G393D 0.26 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 110845142 110845142 C T PVRL3 Silent p.S343S 0.53 TCGA-06-5416-01 3 111426812 111426812 C T PLCXD2 Missense_Mutation p.S68F 0.20 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 3 111671466 111671466 C A PHLDB2 Silent p.L893L 0.23 TCGA-06-5416-01 3 111688661 111688661 G A PHLDB2 Missense_Mutation p.R1147Q 0.18 deleterious(0) possibly_damaging(0.896) TCGA-06-5416-01 3 111688698 111688698 G A PHLDB2 Silent p.T1159T 0.20 TCGA-06-5416-01 3 111697979 111697979 C A ABHD10 Missense_Mutation p.P24H 0.22 tolerated_low_confidence(0.26) benign(0.002) TCGA-06-5416-01 3 111985101 111985101 C A SLC9C1 Nonsense_Mutation p.E288* 0.19 TCGA-06-5416-01 3 112063951 112063951 C T CD200 Silent p.S104S 0.26 TCGA-06-5416-01 3 112534749 112534749 C A CD200R1L 3'UTR 0.22 TCGA-06-5416-01 3 112969743 112969743 G A BOC Intron 0.48 TCGA-06-5416-01 3 112991448 112991448 G A BOC Missense_Mutation p.D287N 0.20 tolerated(0.09) probably_damaging(0.953) TCGA-06-5416-01 3 112992110 112992110 G A BOC Missense_Mutation p.E386K 0.16 tolerated(0.17) possibly_damaging(0.512) TCGA-06-5416-01 3 112992161 112992161 G A BOC Missense_Mutation p.V403I 0.16 tolerated(0.36) benign(0.046) TCGA-06-5416-01 3 112997067 112997067 G A BOC Silent p.A555A 0.21 TCGA-06-5416-01 3 113002380 113002380 G A BOC Missense_Mutation p.D852N 0.23 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 3 11301951 11301951 G A HRH1 Missense_Mutation p.E410K 0.29 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 113172606 113172606 T C SPICE1 Missense_Mutation p.T617A 0.46 tolerated(0.88) benign(0.009) TCGA-06-5416-01 3 113302287 113302287 T C SIDT1 Missense_Mutation p.V260A 0.16 deleterious(0.04) probably_damaging(0.995) TCGA-06-5416-01 3 113329854 113329854 G T SIDT1 Splice_Site p.X574_splice 0.23 TCGA-06-5416-01 3 113375066 113375066 C A KIAA2018 Missense_Mutation p.Q1821H 0.41 probably_damaging(0.998) TCGA-06-5416-01 3 113375169 113375169 T C KIAA2018 Missense_Mutation p.D1787G 0.25 possibly_damaging(0.648) TCGA-06-5416-01 3 113376436 113376436 C A KIAA2018 Missense_Mutation p.D1365Y 0.45 probably_damaging(0.959) TCGA-06-5416-01 3 113377886 113377886 C T KIAA2018 Silent p.S881S 0.23 TCGA-06-5416-01 3 113507628 113507628 C A ATP6V1A Missense_Mutation p.S262Y 0.49 deleterious(0.04) benign(0.045) TCGA-06-5416-01 3 113528218 113528218 G A ATP6V1A Missense_Mutation p.D600N 0.20 tolerated(0.24) benign(0.003) TCGA-06-5416-01 3 113528331 113528331 A G ATP6V1A 3'UTR 0.48 TCGA-06-5416-01 3 113594373 113594373 G A GRAMD1C Missense_Mutation p.R101Q 0.46 deleterious(0.02) benign(0.319) TCGA-06-5416-01 3 113664413 113664413 G T GRAMD1C 3'UTR 0.52 TCGA-06-5416-01 3 113675243 113675243 C A ZDHHC23 Silent p.I310I 0.46 TCGA-06-5416-01 3 113679645 113679645 G A ZDHHC23 3'UTR 0.46 TCGA-06-5416-01 3 113955642 113955642 G A ZNF80 Nonsense_Mutation p.R94* 0.54 TCGA-06-5416-01 3 113955646 113955646 G A ZNF80 Silent p.F92F 0.16 TCGA-06-5416-01 3 114069281 114069281 C T ZBTB20 Silent p.S548S 0.55 TCGA-06-5416-01 3 11606420 11606420 C T VGLL4 Missense_Mutation p.A116T 0.32 deleterious(0.03) possibly_damaging(0.637) TCGA-06-5416-01 3 118621608 118621608 G A IGSF11 Missense_Mutation p.A352V 0.41 tolerated(0.15) benign(0.002) TCGA-06-5416-01 3 118647371 118647371 C A IGSF11 Missense_Mutation p.G137C 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 3 118866351 118866351 C A C3orf30 Missense_Mutation p.L439I 0.20 tolerated(0.19) benign(0.099) TCGA-06-5416-01 3 118948802 118948802 C T B4GALT4 Missense_Mutation p.A49T 0.21 tolerated(0.38) benign(0.003) TCGA-06-5416-01 3 118948976 118948976 C T B4GALT4 5'UTR 0.22 TCGA-06-5416-01 3 119156644 119156644 G T TMEM39A Missense_Mutation p.F294L 0.18 tolerated(1) benign(0.016) TCGA-06-5416-01 3 119190195 119190195 C A POGLUT1 Silent p.I72I 0.21 TCGA-06-5416-01 3 119209414 119209414 C T POGLUT1 Nonsense_Mutation p.R272* 0.20 TCGA-06-5416-01 3 119209420 119209420 G A POGLUT1 Missense_Mutation p.V274I 0.46 tolerated(0.06) possibly_damaging(0.627) TCGA-06-5416-01 3 119217407 119217407 G T TIMMDC1 5'UTR 0.24 TCGA-06-5416-01 3 119306882 119306882 C T ADPRH 3'UTR 0.32 TCGA-06-5416-01 3 119336882 119336882 C A PLA1A Silent p.I257I 0.20 TCGA-06-5416-01 3 119361197 119361197 C A POPDC2 3'UTR 0.12 TCGA-06-5416-01 3 119379188 119379188 G A POPDC2 Missense_Mutation p.A28V 0.42 deleterious(0) possibly_damaging(0.834) TCGA-06-5416-01 3 119463040 119463040 G T MAATS1 Missense_Mutation p.K633N 0.38 deleterious(0) possibly_damaging(0.84) TCGA-06-5416-01 3 119469853 119469853 T C MAATS1 Missense_Mutation p.V738A 0.23 tolerated(0.18) benign(0.209) TCGA-06-5416-01 3 119469918 119469918 G A MAATS1 Missense_Mutation p.E760K 0.19 tolerated_low_confidence(0.53) benign(0.004) TCGA-06-5416-01 3 119666176 119666176 C A GSK3B Missense_Mutation p.R102I 0.20 deleterious(0) possibly_damaging(0.863) TCGA-06-5416-01 3 119886450 119886450 T C GPR156 Missense_Mutation p.N625S 0.23 tolerated(0.13) benign(0.015) TCGA-06-5416-01 3 119912262 119912262 C A GPR156 Missense_Mutation p.K81N 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 120114588 120114588 G T FSTL1 3'UTR 0.50 TCGA-06-5416-01 3 120321014 120321014 G T NDUFB4 Intron 0.20 TCGA-06-5416-01 3 120347061 120347061 G A HGD 3'UTR 0.41 TCGA-06-5416-01 3 120401039 120401039 A C HGD 5'UTR 0.07 TCGA-06-5416-01 3 120401137 120401137 G T HGD 5'UTR 0.33 TCGA-06-5416-01 3 120469604 120469604 G T GTF2E1 Missense_Mutation p.D69Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 120764383 120764383 G A STXBP5L Splice_Site p.X157_splice 0.40 TCGA-06-5416-01 3 121137900 121137900 C T STXBP5L Intron 0.40 TCGA-06-5416-01 3 121206829 121206829 G A POLQ Missense_Mutation p.S1650F 0.41 deleterious(0) possibly_damaging(0.717) TCGA-06-5416-01 3 121207489 121207489 A T POLQ Nonsense_Mutation p.L1430* 0.21 TCGA-06-5416-01 3 121217373 121217373 C T POLQ Missense_Mutation p.V702I 0.39 tolerated(1) benign(0.011) TCGA-06-5416-01 3 121251934 121251934 C T POLQ Missense_Mutation p.R288H 0.45 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 121260194 121260194 A G POLQ Splice_Site p.X158_splice 0.43 TCGA-06-5416-01 3 121260256 121260256 C A POLQ Missense_Mutation p.K138N 0.47 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 3 121350956 121350956 T C HCLS1 Missense_Mutation p.Y439C 0.51 deleterious(0) probably_damaging(0.926) TCGA-06-5416-01 3 121351940 121351940 G T HCLS1 Missense_Mutation p.L328M 0.14 tolerated(0.18) possibly_damaging(0.665) TCGA-06-5416-01 3 121353189 121353189 C T HCLS1 Silent p.E256E 0.21 TCGA-06-5416-01 3 121383218 121383218 G T GOLGB1 3'UTR 0.19 TCGA-06-5416-01 3 121383778 121383778 G A GOLGB1 Nonsense_Mutation p.R3224* 0.16 TCGA-06-5416-01 3 121410659 121410659 G A GOLGB1 Nonsense_Mutation p.R2518* 0.41 TCGA-06-5416-01 3 121415077 121415077 C A GOLGB1 Missense_Mutation p.Q1431H 0.46 possibly_damaging(0.878) TCGA-06-5416-01 3 121491556 121491556 G T IQCB1 Missense_Mutation p.S472Y 0.20 deleterious(0) possibly_damaging(0.855) TCGA-06-5416-01 3 121646640 121646640 C T SLC15A2 Missense_Mutation p.A387V 0.21 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 3 121740876 121740876 G A ILDR1 Missense_Mutation p.L17F 0.42 tolerated(0.15) probably_damaging(0.994) TCGA-06-5416-01 3 121838286 121838286 G T CD86 Nonsense_Mutation p.E299* 0.39 TCGA-06-5416-01 3 121838341 121838341 C T CD86 Missense_Mutation p.S317L 0.23 tolerated(1) unknown(0) TCGA-06-5416-01 3 121838357 121838357 C T CD86 Silent p.C322C 0.18 TCGA-06-5416-01 3 12192752 12192752 G A TIMP4 3'Flank 0.25 TCGA-06-5416-01 3 121980389 121980389 C A CASR Silent p.S169S 0.19 TCGA-06-5416-01 3 122002692 122002692 C T CASR Silent p.L641L 0.16 TCGA-06-5416-01 3 122060289 122060289 C T CSTA Nonsense_Mutation p.R58* 0.40 TCGA-06-5416-01 3 122269487 122269487 T G PARP9 Missense_Mutation p.K459Q 0.21 tolerated(0.45) benign(0.017) TCGA-06-5416-01 3 122269538 122269538 C A PARP9 Missense_Mutation p.A442S 0.43 deleterious(0.02) benign(0.217) TCGA-06-5416-01 3 122287752 122287752 A G DTX3L Silent p.P272P 0.15 TCGA-06-5416-01 3 122288250 122288250 C T DTX3L Silent p.I438I 0.22 TCGA-06-5416-01 3 122354688 122354688 C A PARP15 Missense_Mutation p.A593D 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 122629782 122629782 C T SEMA5B Missense_Mutation p.E1122K 0.20 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 3 122630907 122630907 G A SEMA5B Missense_Mutation p.S1023L 0.46 deleterious(0.02) benign(0.099) TCGA-06-5416-01 3 123051504 123051504 G A ADCY5 Silent p.I475I 0.43 TCGA-06-5416-01 3 123332839 123332839 G A MYLK 3'UTR 0.23 TCGA-06-5416-01 3 123348440 123348440 G A MYLK Silent p.N1665N 0.41 TCGA-06-5416-01 3 123376014 123376014 C A MYLK Missense_Mutation p.S1416I 0.19 deleterious(0) possibly_damaging(0.812) TCGA-06-5416-01 3 123512690 123512690 G A MYLK Intron 0.20 TCGA-06-5416-01 3 123633632 123633632 C A CCDC14 Missense_Mutation p.E911D 0.50 deleterious(0.02) possibly_damaging(0.801) TCGA-06-5416-01 3 124103814 124103814 C T KALRN Silent p.F629F 0.16 TCGA-06-5416-01 3 124174204 124174204 G T KALRN Nonsense_Mutation p.E1243* 0.43 TCGA-06-5416-01 3 124431813 124431813 C T KALRN Missense_Mutation p.H1006Y 0.17 deleterious(0.01) possibly_damaging(0.698) TCGA-06-5416-01 3 124437849 124437849 C A RP11-71H17.7 5'Flank 0.20 TCGA-06-5416-01 3 124438126 124438126 C T RP11-71H17.7 5'Flank 0.45 TCGA-06-5416-01 3 124646412 124646412 C T MUC13 Missense_Mutation p.A160T 0.41 tolerated(1) benign(0) TCGA-06-5416-01 3 124692739 124692739 T G HEG1 Missense_Mutation p.N1278H 0.40 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 124748078 124748078 C T HEG1 Missense_Mutation p.E191K 0.08 tolerated_low_confidence(0.08) benign(0.122) TCGA-06-5416-01 3 124826668 124826668 C T SLC12A8 Silent p.T454T 0.45 TCGA-06-5416-01 3 124854526 124854526 G A SLC12A8 Silent p.F241F 0.16 TCGA-06-5416-01 3 124930169 124930169 C T SLC12A8 Missense_Mutation p.E9K 0.20 deleterious(0) possibly_damaging(0.907) TCGA-06-5416-01 3 124951576 124951576 G T ZNF148 Missense_Mutation p.S665Y 0.16 deleterious(0) probably_damaging(0.921) TCGA-06-5416-01 3 125166500 125166500 A C SNX4 3'UTR 0.31 TCGA-06-5416-01 3 125271207 125271207 G T OSBPL11 Missense_Mutation p.S491Y 0.42 deleterious(0.03) benign(0.237) TCGA-06-5416-01 3 125286337 125286337 G A OSBPL11 Missense_Mutation p.L257F 0.25 tolerated(0.06) probably_damaging(0.921) TCGA-06-5416-01 3 12546700 12546700 C A TSEN2 Silent p.I293I 0.26 TCGA-06-5416-01 3 125701224 125701224 G T ROPN1B Nonsense_Mutation p.E170* 0.23 TCGA-06-5416-01 3 125702264 125702264 T C ROPN1B 3'UTR 0.21 TCGA-06-5416-01 3 125775481 125775481 C A SLC41A3 Intron 0.23 TCGA-06-5416-01 3 125787038 125787038 G A SLC41A3 Missense_Mutation p.R9W 0.42 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 3 125831691 125831691 C A ALDH1L1 Missense_Mutation p.E715D 0.42 deleterious(0.01) benign(0.023) TCGA-06-5416-01 3 125855645 125855645 C T ALDH1L1 Missense_Mutation p.A446T 0.52 deleterious(0.02) benign(0.002) TCGA-06-5416-01 3 125872401 125872401 C T ALDH1L1 Silent p.T258T 0.18 TCGA-06-5416-01 3 126142171 126142171 G A CCDC37 Silent p.S362S 0.21 TCGA-06-5416-01 3 126268814 126268814 C T C3orf22 Missense_Mutation p.R108H 0.21 tolerated(0.55) benign(0.001) TCGA-06-5416-01 3 126633540 126633540 A G CHCHD6 Silent p.K171K 0.22 TCGA-06-5416-01 3 126708282 126708282 C T PLXNA1 Silent p.I282I 0.45 TCGA-06-5416-01 3 126708629 126708629 C T PLXNA1 Missense_Mutation p.S398L 0.43 deleterious(0.01) probably_damaging(0.989) TCGA-06-5416-01 3 126749181 126749181 C T PLXNA1 Silent p.F1719F 0.21 TCGA-06-5416-01 3 127318206 127318206 C T MCM2 Missense_Mutation p.R18W 0.39 deleterious(0) benign(0.232) TCGA-06-5416-01 3 127325561 127325561 C T MCM2 Silent p.F334F 0.43 TCGA-06-5416-01 3 127336196 127336196 C T MCM2 Silent p.I616I 0.19 TCGA-06-5416-01 3 127339943 127339943 C T MCM2 Missense_Mutation p.R826C 0.45 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 3 127381128 127381128 C T PODXL2 Silent p.L394L 0.41 TCGA-06-5416-01 3 127390401 127390401 C A PODXL2 Missense_Mutation p.A517E 0.21 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 3 127394909 127394909 T G ABTB1 Missense_Mutation p.V91G 0.45 deleterious(0) possibly_damaging(0.866) TCGA-06-5416-01 3 127541197 127541197 C T MGLL 5'UTR 0.50 TCGA-06-5416-01 3 127642247 127642247 G T KBTBD12 Nonsense_Mutation p.E115* 0.36 TCGA-06-5416-01 3 128181387 128181387 C T DNAJB8 3'UTR 0.48 TCGA-06-5416-01 3 128181577 128181577 C T DNAJB8 Missense_Mutation p.G171D 0.25 tolerated(0.24) possibly_damaging(0.554) TCGA-06-5416-01 3 128181808 128181808 C T DNAJB8 Missense_Mutation p.R94H 0.40 tolerated(0.19) benign(0.006) TCGA-06-5416-01 3 128200016 128200016 G A GATA2 Missense_Mutation p.A430V 0.25 deleterious(0.03) probably_damaging(0.97) TCGA-06-5416-01 3 128356703 128356703 G A RPN1 Missense_Mutation p.P191L 0.37 tolerated(0.62) benign(0.356) TCGA-06-5416-01 3 128525394 128525394 T G RAB7A Missense_Mutation p.F120L 0.18 deleterious(0.01) possibly_damaging(0.872) TCGA-06-5416-01 3 128525422 128525422 G A RAB7A Missense_Mutation p.E130K 0.44 tolerated(0.06) benign(0.021) TCGA-06-5416-01 3 128532292 128532292 T C RAB7A 3'UTR 0.20 TCGA-06-5416-01 3 128532360 128532360 A G RAB7A 3'UTR 0.31 TCGA-06-5416-01 3 12858079 12858079 C T CAND2 Missense_Mutation p.R550W 0.29 deleterious(0) possibly_damaging(0.677) TCGA-06-5416-01 3 128712079 128712079 G A KIAA1257 Silent p.S23S 0.27 TCGA-06-5416-01 3 12877673 12877673 C T RPL32 Missense_Mutation p.A110T 0.57 tolerated(0.23) benign(0.003) TCGA-06-5416-01 3 128780820 128780820 C A GP9 Missense_Mutation p.L80I 0.18 tolerated(0.15) possibly_damaging(0.615) TCGA-06-5416-01 3 128781065 128781065 C T GP9 Silent p.G161G 0.50 TCGA-06-5416-01 3 12880973 12880973 G A RPL32 Silent p.G51G 0.26 TCGA-06-5416-01 3 128971130 128971130 G A COPG1 Missense_Mutation p.V33I 0.21 tolerated(0.42) benign(0.008) TCGA-06-5416-01 3 129020977 129020977 G A HMCES Missense_Mutation p.V274I 0.41 tolerated(0.25) benign(0.007) TCGA-06-5416-01 3 129023558 129023558 C A HMCES Missense_Mutation p.L319M 0.22 tolerated(0.06) benign(0.133) TCGA-06-5416-01 3 129034157 129034157 C T H1FX Missense_Mutation p.V197M 0.32 deleterious_low_confidence(0.02) unknown(0) TCGA-06-5416-01 3 129112044 129112044 G A SNORA7B 3'Flank 0.20 TCGA-06-5416-01 3 129156689 129156689 G A MBD4 Missense_Mutation p.A70V 0.47 tolerated(0.12) benign(0.093) TCGA-06-5416-01 3 129196973 129196973 A G IFT122 Missense_Mutation p.D472G 0.39 tolerated(0.17) benign(0.017) TCGA-06-5416-01 3 129198689 129198689 C T IFT122 Missense_Mutation p.S522F 0.36 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 3 129200372 129200372 G T IFT122 Splice_Site p.X548_splice 0.22 TCGA-06-5416-01 3 129247871 129247871 C T RHO Silent p.L99L 0.41 TCGA-06-5416-01 3 129247886 129247886 G A RHO Missense_Mutation p.V104I 0.50 tolerated(0.32) benign(0.004) TCGA-06-5416-01 3 129249858 129249858 C T RHO Silent p.C167C 0.48 TCGA-06-5416-01 3 129251574 129251574 G A RHO Missense_Mutation p.A299T 0.26 tolerated(0.78) benign(0.126) TCGA-06-5416-01 3 129262091 129262091 C A H1FOO Silent p.I10I 0.51 TCGA-06-5416-01 3 129275159 129275159 G A PLXND1 Missense_Mutation p.A1925V 0.48 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 3 129303355 129303355 C T PLXND1 Silent p.E634E 0.18 TCGA-06-5416-01 3 129389898 129389898 G T TMCC1 Nonsense_Mutation p.Y262* 0.23 TCGA-06-5416-01 3 130289859 130289859 G T COL6A6 Missense_Mutation p.G867C 0.44 deleterious(0.01) possibly_damaging(0.784) TCGA-06-5416-01 3 130293213 130293213 G A COL6A6 Missense_Mutation p.D1131N 0.18 tolerated(0.98) benign(0.021) TCGA-06-5416-01 3 130368125 130368125 G A COL6A6 Missense_Mutation p.A1818T 0.55 tolerated(0.28) benign(0.004) TCGA-06-5416-01 3 130449224 130449224 G T PIK3R4 Missense_Mutation p.L505I 0.41 tolerated(0.41) benign(0.02) TCGA-06-5416-01 3 130650955 130650955 G A ATP2C1 Silent p.E103E 0.31 TCGA-06-5416-01 3 130656272 130656272 G A ATP2C1 Missense_Mutation p.A143T 0.35 deleterious(0) possibly_damaging(0.835) TCGA-06-5416-01 3 130673877 130673877 G T ATP2C1 Nonsense_Mutation p.E271* 0.38 TCGA-06-5416-01 3 130718489 130718489 G A ATP2C1 Missense_Mutation p.S906N 0.42 tolerated(0.36) benign(0.141) TCGA-06-5416-01 3 131181525 131181525 G A MRPL3 3'UTR 0.18 TCGA-06-5416-01 3 131624188 131624188 C A CPNE4 Missense_Mutation p.G34C 0.41 deleterious(0) probably_damaging(0.975) TCGA-06-5416-01 3 132047146 132047146 C A ACPP Silent p.T52T 0.19 TCGA-06-5416-01 3 132416200 132416200 C T NPHP3 Nonsense_Mutation p.W664* 0.24 TCGA-06-5416-01 3 133356909 133356909 G A TOPBP1 Silent p.V777V 0.22 TCGA-06-5416-01 3 133358937 133358937 C T TOPBP1 Missense_Mutation p.R700H 0.44 deleterious(0) possibly_damaging(0.627) TCGA-06-5416-01 3 133472445 133472445 G A TF Missense_Mutation p.E75K 0.21 tolerated(0.34) benign(0.107) TCGA-06-5416-01 3 13371967 13371967 G A NUP210 Missense_Mutation p.A1368V 0.52 deleterious(0.04) benign(0.003) TCGA-06-5416-01 3 13378301 13378301 C A NUP210 Missense_Mutation p.G1224W 0.31 deleterious(0) possibly_damaging(0.682) TCGA-06-5416-01 3 133913959 133913959 C T RYK Missense_Mutation p.A284T 0.43 tolerated(0.13) possibly_damaging(0.81) TCGA-06-5416-01 3 13399787 13399787 C T NUP210 Missense_Mutation p.A755T 0.22 tolerated(1) benign(0.001) TCGA-06-5416-01 3 134084731 134084731 G A AMOTL2 Missense_Mutation p.R403C 0.26 deleterious(0) probably_damaging(0.944) TCGA-06-5416-01 3 134267955 134267955 A C CEP63 Missense_Mutation p.E373D 0.23 tolerated(0.06) benign(0.199) TCGA-06-5416-01 3 134670598 134670598 G T EPHB1 Missense_Mutation p.R170L 0.40 deleterious(0.01) possibly_damaging(0.647) TCGA-06-5416-01 3 134825412 134825412 G A EPHB1 Missense_Mutation p.A310T 0.45 tolerated(0.09) benign(0.046) TCGA-06-5416-01 3 134880933 134880933 G A EPHB1 Missense_Mutation p.G499D 0.23 tolerated(0.1) benign(0.072) TCGA-06-5416-01 3 134898817 134898817 C T EPHB1 Silent p.I625I 0.20 TCGA-06-5416-01 3 134920469 134920469 G A EPHB1 Missense_Mutation p.D762N 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-06-5416-01 3 134968196 134968196 C T EPHB1 Silent p.L903L 0.22 TCGA-06-5416-01 3 135870199 135870199 C A MSL2 Missense_Mutation p.K508N 0.41 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 135914082 135914082 A G MSL2 5'UTR 0.25 TCGA-06-5416-01 3 136047607 136047607 T C PCCB Missense_Mutation p.V489A 0.53 tolerated_low_confidence(0.15) benign(0.155) TCGA-06-5416-01 3 136573284 136573284 G T SLC35G2 Splice_Site 0.17 TCGA-06-5416-01 3 136573801 136573801 C T SLC35G2 Nonsense_Mutation p.R167* 0.41 TCGA-06-5416-01 3 136573851 136573851 T C SLC35G2 Silent p.Y183Y 0.48 TCGA-06-5416-01 3 137483985 137483985 G A SOX14 Missense_Mutation p.S120N 0.29 tolerated(0.37) benign(0.088) TCGA-06-5416-01 3 137717679 137717679 C T CLDN18 5'UTR 0.55 TCGA-06-5416-01 3 137742531 137742531 C T CLDN18 Silent p.I84I 0.18 TCGA-06-5416-01 3 137790660 137790660 C T DZIP1L Silent p.S480S 0.40 TCGA-06-5416-01 3 137842992 137842992 T C A4GNT 3'UTR 0.28 TCGA-06-5416-01 3 137843191 137843191 C T A4GNT Missense_Mutation p.R313H 0.16 deleterious(0.02) benign(0.067) TCGA-06-5416-01 3 137882308 137882308 G A DBR1 Missense_Mutation p.A275V 0.43 tolerated(0.09) benign(0.105) TCGA-06-5416-01 3 137892399 137892399 A G DBR1 Silent p.N89N 0.24 TCGA-06-5416-01 3 137958341 137958341 C T ARMC8 Missense_Mutation p.R256W 0.43 deleterious(0.02) possibly_damaging(0.471) TCGA-06-5416-01 3 138116242 138116242 C T MRAS Silent p.I90I 0.54 TCGA-06-5416-01 3 138219319 138219319 G A CEP70 Missense_Mutation p.P487S 0.46 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 3 138227362 138227362 C T CEP70 Silent p.K323K 0.20 TCGA-06-5416-01 3 138256090 138256090 G A CEP70 Missense_Mutation p.R189C 0.18 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 138291762 138291762 G A CEP70 Missense_Mutation p.P3L 0.43 deleterious_low_confidence(0) possibly_damaging(0.6) TCGA-06-5416-01 3 138351856 138351856 C T FAIM Missense_Mutation p.R193W 0.43 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 138351918 138351918 T A FAIM Missense_Mutation p.S213R 0.21 tolerated_low_confidence(0.09) benign(0.005) TCGA-06-5416-01 3 138352045 138352045 A G FAIM 3'UTR 0.33 TCGA-06-5416-01 3 138383881 138383881 G T PIK3CB Missense_Mutation p.S890Y 0.06 deleterious(0) possibly_damaging(0.797) TCGA-06-5416-01 3 138417901 138417901 C A PIK3CB Nonsense_Mutation p.E540* 0.24 TCGA-06-5416-01 3 138668424 138668424 G A C3orf72 Missense_Mutation p.G55S 0.41 tolerated_low_confidence(0.72) benign(0) TCGA-06-5416-01 3 138724854 138724854 G A PRR23A Missense_Mutation p.S86L 0.31 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 138738757 138738757 C T PRR23B Silent p.P249P 0.41 TCGA-06-5416-01 3 138738764 138738764 C T PRR23B Missense_Mutation p.R247H 0.27 tolerated(0.07) benign(0.013) TCGA-06-5416-01 3 138738875 138738875 G A PRR23B Missense_Mutation p.S210F 0.16 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 138738979 138738979 G A PRR23B Silent p.A175A 0.25 TCGA-06-5416-01 3 139065777 139065777 G A MRPS22 Missense_Mutation p.S77N 0.07 tolerated(0.83) benign(0.013) TCGA-06-5416-01 3 139069088 139069088 G A MRPS22 Missense_Mutation p.R191Q 0.24 tolerated(0.07) benign(0.28) TCGA-06-5416-01 3 139094397 139094397 C T COPB2 Silent p.V188V 0.17 TCGA-06-5416-01 3 139102159 139102159 A G COPB2 Missense_Mutation p.V41A 0.21 deleterious(0.01) benign(0.259) TCGA-06-5416-01 3 139279837 139279837 C T NMNAT3 3'UTR 0.21 TCGA-06-5416-01 3 139297832 139297832 C T NMNAT3 Missense_Mutation p.A22T 0.23 deleterious(0.02) benign(0.052) TCGA-06-5416-01 3 140123571 140123571 C T CLSTN2 Silent p.I200I 0.50 TCGA-06-5416-01 3 140167373 140167373 G T CLSTN2 Missense_Mutation p.R267M 0.19 deleterious(0) possibly_damaging(0.808) TCGA-06-5416-01 3 140285008 140285008 G T CLSTN2 Missense_Mutation p.E927D 0.44 tolerated(0.23) benign(0.004) TCGA-06-5416-01 3 140401943 140401943 C T TRIM42 Silent p.I327I 0.14 TCGA-06-5416-01 3 140406946 140406946 C T TRIM42 Silent p.Y474Y 0.19 TCGA-06-5416-01 3 140675523 140675523 C A SLC25A36 Missense_Mutation p.H66N 0.37 tolerated(0.15) benign(0.005) TCGA-06-5416-01 3 140689821 140689821 A G SLC25A36 Silent p.L146L 0.40 TCGA-06-5416-01 3 141011317 141011317 C T ACPL2 Missense_Mutation p.A238V 0.48 tolerated(0.3) benign(0.021) TCGA-06-5416-01 3 141011591 141011591 C T ACPL2 Silent p.I329I 0.40 TCGA-06-5416-01 3 141012120 141012120 C T ACPL2 3'UTR 0.31 TCGA-06-5416-01 3 141162049 141162049 G T ZBTB38 Missense_Mutation p.Q273H 0.23 tolerated(0.09) possibly_damaging(0.595) TCGA-06-5416-01 3 141164683 141164683 C T ZBTB38 Silent p.S1151S 0.20 TCGA-06-5416-01 3 141328299 141328299 G T RASA2 Missense_Mutation p.D755Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 1414037 1414037 G A CNTN6 Missense_Mutation p.S516N 0.25 deleterious(0.05) probably_damaging(0.999) TCGA-06-5416-01 3 1414126 1414126 A C CNTN6 Missense_Mutation p.K546Q 0.23 tolerated(0.13) possibly_damaging(0.579) TCGA-06-5416-01 3 14154504 14154504 G T CHCHD4 Silent p.L117L 0.57 TCGA-06-5416-01 3 142030606 142030606 G A XRN1 Missense_Mutation p.A1623V 0.21 tolerated_low_confidence(0.5) benign(0.001) TCGA-06-5416-01 3 142090128 142090128 C A XRN1 Missense_Mutation p.E1007D 0.32 tolerated(0.53) benign(0.002) TCGA-06-5416-01 3 142122611 142122611 A C XRN1 Missense_Mutation p.F670V 0.21 tolerated(0.16) benign(0.028) TCGA-06-5416-01 3 142137356 142137356 C T XRN1 Missense_Mutation p.V446I 0.42 tolerated(0.36) benign(0.001) TCGA-06-5416-01 3 142151594 142151594 G A XRN1 Missense_Mutation p.R73C 0.23 deleterious(0) benign(0.32) TCGA-06-5416-01 3 142177832 142177832 C T ATR Missense_Mutation p.V2491I 0.18 deleterious(0.02) benign(0.098) TCGA-06-5416-01 3 142241601 142241601 C T ATR Missense_Mutation p.R1412Q 0.18 tolerated(0.19) probably_damaging(0.922) TCGA-06-5416-01 3 142242885 142242885 G A ATR Nonsense_Mutation p.R1368* 0.46 TCGA-06-5416-01 3 142281714 142281714 C T ATR Missense_Mutation p.R177Q 0.19 tolerated_low_confidence(0.07) benign(0.192) TCGA-06-5416-01 3 142388273 142388273 G T PLS1 Missense_Mutation p.D38Y 0.22 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 3 142405176 142405176 G T PLS1 Silent p.G313G 0.16 TCGA-06-5416-01 3 142503553 142503553 C T TRPC1 Missense_Mutation p.S323F 0.17 deleterious(0) benign(0.309) TCGA-06-5416-01 3 142511759 142511759 C A TRPC1 Missense_Mutation p.L511I 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 3 142680904 142680904 G A PAQR9 3'UTR 0.25 TCGA-06-5416-01 3 142681286 142681286 C T PAQR9 Missense_Mutation p.R298H 0.42 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 3 142681438 142681438 G A PAQR9 Silent p.F247F 0.37 TCGA-06-5416-01 3 142741830 142741830 C T U2SURP Missense_Mutation p.A385V 0.53 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 3 142772598 142772598 G A U2SURP Silent p.K912K 0.37 TCGA-06-5416-01 3 142840832 142840832 C T CHST2 Silent p.L392L 0.17 TCGA-06-5416-01 3 143271232 143271232 G T SLC9A9 Missense_Mutation p.S354Y 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 143567222 143567222 G T SLC9A9 5'UTR 0.26 TCGA-06-5416-01 3 143708616 143708616 A G C3orf58 Missense_Mutation p.Y409C 0.50 tolerated(0.14) possibly_damaging(0.724) TCGA-06-5416-01 3 14487247 14487247 T G SLC6A6 Missense_Mutation p.F84L 0.24 tolerated(0.88) benign(0.217) TCGA-06-5416-01 3 14499513 14499513 G A SLC6A6 Missense_Mutation p.D219N 0.20 deleterious(0) possibly_damaging(0.555) TCGA-06-5416-01 3 14520059 14520059 T C SLC6A6 Missense_Mutation p.V478A 0.28 tolerated(0.82) benign(0.001) TCGA-06-5416-01 3 14526453 14526453 C T SLC6A6 Missense_Mutation p.R601C 0.23 deleterious(0.02) benign(0) TCGA-06-5416-01 3 147106574 147106574 A G ZIC4 3'UTR 0.20 TCGA-06-5416-01 3 148458829 148458829 C A AGTR1 Missense_Mutation p.L3I 0.20 tolerated(0.24) benign(0.003) TCGA-06-5416-01 3 148459368 148459368 C T AGTR1 Silent p.F182F 0.21 TCGA-06-5416-01 3 148460052 148460052 C T AGTR1 3'UTR 0.36 TCGA-06-5416-01 3 14861541 14861541 C T FGD5 Silent p.A321A 0.58 TCGA-06-5416-01 3 148789103 148789103 T G HLTF Missense_Mutation p.N277T 0.20 deleterious(0.03) possibly_damaging(0.881) TCGA-06-5416-01 3 148858970 148858970 C T HPS3 Silent p.L293L 0.42 TCGA-06-5416-01 3 148894071 148894071 T C CP Silent p.G1049G 0.21 TCGA-06-5416-01 3 148903197 148903197 T C CP Missense_Mutation p.Y705C 0.44 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 3 148925377 148925377 A T CP Missense_Mutation p.L270H 0.23 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 148928121 148928121 T C CP Missense_Mutation p.D147G 0.44 deleterious(0.01) possibly_damaging(0.83) TCGA-06-5416-01 3 148939523 148939523 C T CP Silent p.A19A 0.46 TCGA-06-5416-01 3 148939584 148939584 T G CP 5'UTR 0.27 TCGA-06-5416-01 3 149087626 149087626 T C TM4SF1 3'UTR 0.46 TCGA-06-5416-01 3 149089581 149089581 A G TM4SF1 Missense_Mutation p.F163L 0.18 deleterious(0.02) probably_damaging(0.983) TCGA-06-5416-01 3 149095410 149095410 C A TM4SF1 5'UTR 0.08 TCGA-06-5416-01 3 149245636 149245636 G A WWTR1 Missense_Mutation p.P298S 0.20 deleterious(0.04) probably_damaging(0.997) TCGA-06-5416-01 3 149260144 149260144 C T WWTR1 Missense_Mutation p.R250H 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 3 14939527 14939527 C T FGD5 Silent p.F997F 0.07 TCGA-06-5416-01 3 149589902 149589902 C T RNF13 Silent p.I94I 0.25 TCGA-06-5416-01 3 149629810 149629810 C A RNF13 Nonsense_Mutation p.Y182* 0.20 TCGA-06-5416-01 3 150176202 150176202 G A TSC22D2 Missense_Mutation p.E708K 0.15 deleterious(0) possibly_damaging(0.621) TCGA-06-5416-01 3 150290273 150290273 G T EIF2A Missense_Mutation p.R447I 0.42 tolerated(0.07) possibly_damaging(0.483) TCGA-06-5416-01 3 150384632 150384632 G T FAM194A Missense_Mutation p.S557Y 0.43 tolerated(0.43) benign(0.202) TCGA-06-5416-01 3 150398274 150398274 C T FAM194A Silent p.Q364Q 0.37 TCGA-06-5416-01 3 150403780 150403780 C T FAM194A Silent p.S213S 0.21 TCGA-06-5416-01 3 150460062 150460062 G A SIAH2 Missense_Mutation p.R281C 0.15 tolerated(0.06) benign(0.255) TCGA-06-5416-01 3 150480391 150480391 G T SIAH2 Silent p.V82V 0.22 TCGA-06-5416-01 3 150931264 150931264 G T P2RY14 Missense_Mutation p.L281M 0.20 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 3 151011986 151011986 G A GPR87 Missense_Mutation p.R350C 0.17 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 151046170 151046170 A C P2RY13 Missense_Mutation p.L225R 0.19 deleterious(0) possibly_damaging(0.866) TCGA-06-5416-01 3 151073789 151073789 G T MED12L Missense_Mutation p.A840S 0.39 tolerated(0.48) possibly_damaging(0.793) TCGA-06-5416-01 3 151154997 151154997 G T IGSF10 Nonsense_Mutation p.S2451* 0.20 TCGA-06-5416-01 3 151163622 151163622 C T IGSF10 Missense_Mutation p.E1383K 0.46 tolerated(0.7) benign(0.003) TCGA-06-5416-01 3 151164672 151164672 G A IGSF10 Missense_Mutation p.R1033W 0.19 tolerated(0.1) benign(0.005) TCGA-06-5416-01 3 151164689 151164689 C T IGSF10 Missense_Mutation p.R1027K 0.15 tolerated(0.07) benign(0.025) TCGA-06-5416-01 3 151164807 151164807 T C IGSF10 Missense_Mutation p.T988A 0.24 tolerated(0.26) benign(0.002) TCGA-06-5416-01 3 151458483 151458483 C T AADACL2 Missense_Mutation p.S63F 0.21 tolerated(0.71) benign(0.014) TCGA-06-5416-01 3 151475209 151475209 G T AADACL2 Missense_Mutation p.D345Y 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 152554196 152554196 G A P2RY1 Missense_Mutation p.E209K 0.17 deleterious(0.02) benign(0.355) TCGA-06-5416-01 3 15292849 15292849 G A CAPN7 3'UTR 0.08 TCGA-06-5416-01 3 15298412 15298412 G A SH3BP5 Silent p.G366G 0.30 TCGA-06-5416-01 3 153972508 153972508 G A ARHGEF26 Splice_Site p.X790_splice 0.50 TCGA-06-5416-01 3 153998414 153998414 G A DHX36 Missense_Mutation p.P841S 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 154033003 154033003 C A DHX36 Missense_Mutation p.K145N 0.18 tolerated(0.52) benign(0.007) TCGA-06-5416-01 3 154147441 154147441 G A GPR149 5'UTR 0.50 TCGA-06-5416-01 3 15452702 15452702 G A METTL6 Intron 0.25 TCGA-06-5416-01 3 15480675 15480675 C T EAF1 3'UTR 0.12 TCGA-06-5416-01 3 15480684 15480684 C A EAF1 3'UTR 0.09 TCGA-06-5416-01 3 15480689 15480689 T C EAF1 3'UTR 0.08 TCGA-06-5416-01 3 154859884 154859884 A G MME Silent p.K354K 0.17 TCGA-06-5416-01 3 15493125 15493125 C T COLQ 3'UTR 0.59 TCGA-06-5416-01 3 15512053 15512053 C T COLQ Missense_Mutation p.R236Q 0.28 deleterious(0.03) unknown(0) TCGA-06-5416-01 3 15515762 15515762 C A COLQ Missense_Mutation p.K191N 0.47 tolerated(0.16) unknown(0) TCGA-06-5416-01 3 155199210 155199210 G A PLCH1 Silent p.T1543T 0.18 TCGA-06-5416-01 3 155199955 155199955 G A PLCH1 Missense_Mutation p.A1295V 0.20 tolerated_low_confidence(0.17) benign(0.097) TCGA-06-5416-01 3 155206509 155206509 C T PLCH1 Missense_Mutation p.D815N 0.13 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 3 155208579 155208579 C A PLCH1 Missense_Mutation p.D784Y 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 155212010 155212010 C T PLCH1 Missense_Mutation p.R689Q 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 155311781 155311781 G T PLCH1 Missense_Mutation p.A128D 0.29 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 3 155628954 155628954 C T GMPS Missense_Mutation p.R258C 0.50 deleterious(0) possibly_damaging(0.794) TCGA-06-5416-01 3 155861167 155861167 C T KCNAB1 Intron 0.50 TCGA-06-5416-01 3 15616491 15616491 A C HACL1 Missense_Mutation p.F301C 0.46 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 3 156395884 156395884 G A TIPARP Missense_Mutation p.R133Q 0.34 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 3 156710951 156710951 G T RP11-6F2.3 5'Flank 0.52 TCGA-06-5416-01 3 15686669 15686669 G T BTD Nonsense_Mutation p.E436* 0.54 TCGA-06-5416-01 3 15711949 15711949 A G ANKRD28 Missense_Mutation p.F997S 0.52 tolerated(0.13) benign(0.002) TCGA-06-5416-01 3 157131705 157131705 C T VEPH1 Missense_Mutation p.A291T 0.19 deleterious(0) benign(0.209) TCGA-06-5416-01 3 15720808 15720808 C A ANKRD28 Missense_Mutation p.R824I 0.53 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 157289761 157289761 C T C3orf55 Silent p.F77F 0.16 TCGA-06-5416-01 3 157820464 157820464 T C SHOX2 Intron 0.15 TCGA-06-5416-01 3 15793307 15793307 C A ANKRD28 Missense_Mutation p.D71Y 0.62 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 158380453 158380453 G T GFM1 Missense_Mutation p.A454S 0.29 tolerated(1) benign(0.054) TCGA-06-5416-01 3 158384448 158384448 A G LXN Missense_Mutation p.V219A 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-06-5416-01 3 158546783 158546783 G A MFSD1 3'UTR 0.30 TCGA-06-5416-01 3 159707016 159707016 C T IL12A Intron 0.24 TCGA-06-5416-01 3 159976287 159976287 A C IFT80 3'UTR 0.24 TCGA-06-5416-01 3 160119754 160119754 G A SMC4 Missense_Mutation p.S64N 0.13 deleterious_low_confidence(0.01) benign(0.038) TCGA-06-5416-01 3 160122276 160122276 G T SMC4 Missense_Mutation p.R224I 0.14 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 160141306 160141306 C T SMC4 Missense_Mutation p.R705C 0.33 deleterious(0.01) benign(0.177) TCGA-06-5416-01 3 160952983 160952983 G A NMD3 Missense_Mutation p.R187H 0.13 deleterious(0.03) benign(0.028) TCGA-06-5416-01 3 161221188 161221188 T G OTOL1 Missense_Mutation p.L298V 0.45 tolerated(0.5) benign(0.093) TCGA-06-5416-01 3 16216843 16216843 G A GALNT15 Missense_Mutation p.G62E 0.28 tolerated(0.07) benign(0.146) TCGA-06-5416-01 3 16368342 16368342 C T RFTN1 Silent p.S396S 0.19 TCGA-06-5416-01 3 164905770 164905770 T G SLITRK3 Missense_Mutation p.K950T 0.18 tolerated_low_confidence(0.57) benign(0.003) TCGA-06-5416-01 3 164906992 164906992 G A SLITRK3 Missense_Mutation p.P543S 0.55 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 3 164907928 164907928 C A SLITRK3 Nonsense_Mutation p.E231* 0.54 TCGA-06-5416-01 3 16535247 16535247 T C RFTN1 Missense_Mutation p.T44A 0.55 tolerated(0.1) possibly_damaging(0.782) TCGA-06-5416-01 3 165547909 165547909 C T BCHE Missense_Mutation p.A305T 0.38 tolerated(0.32) benign(0.007) TCGA-06-5416-01 3 16646870 16646870 G A DAZL 5'Flank 0.59 TCGA-06-5416-01 3 167254686 167254686 C T WDR49 Silent p.A290A 0.66 TCGA-06-5416-01 3 167422654 167422654 C A PDCD10 Missense_Mutation p.Q42H 0.48 deleterious(0.04) possibly_damaging(0.645) TCGA-06-5416-01 3 167422674 167422674 C A PDCD10 Missense_Mutation p.V36L 0.51 tolerated(0.3) benign(0.001) TCGA-06-5416-01 3 167438014 167438014 C T PDCD10 5'UTR 0.29 TCGA-06-5416-01 3 167745554 167745554 G C GOLIM4 Missense_Mutation p.Q529E 0.14 tolerated(0.44) benign(0.209) TCGA-06-5416-01 3 168269704 168269704 G A MIR551B RNA 0.34 TCGA-06-5416-01 3 168833748 168833748 A G MECOM Missense_Mutation p.Y515H 0.14 tolerated(0.11) benign(0.012) TCGA-06-5416-01 3 168833844 168833844 C T MECOM Missense_Mutation p.E483K 0.53 deleterious(0.02) possibly_damaging(0.82) TCGA-06-5416-01 3 168845680 168845680 G A MECOM Missense_Mutation p.T137M 0.36 tolerated(0.14) benign(0.029) TCGA-06-5416-01 3 168849253 168849253 C A MECOM Missense_Mutation p.D69Y 0.36 deleterious(0.04) possibly_damaging(0.876) TCGA-06-5416-01 3 169381133 169381133 G A MECOM Silent p.L10L 0.17 TCGA-06-5416-01 3 169485625 169485625 T C ACTRT3 Silent p.Q238Q 0.39 TCGA-06-5416-01 3 169513231 169513231 C A LRRC34 Intron 0.28 TCGA-06-5416-01 3 169513556 169513556 C T LRRC34 Intron 0.44 TCGA-06-5416-01 3 169540392 169540392 C T LRRIQ4 Missense_Mutation p.A228V 0.38 tolerated(0.19) benign(0.002) TCGA-06-5416-01 3 169574595 169574595 C A LRRC31 Nonsense_Mutation p.G185* 0.18 TCGA-06-5416-01 3 169587627 169587627 A G LRRC31 5'UTR 0.16 TCGA-06-5416-01 3 169639054 169639054 C T SAMD7 Missense_Mutation p.P47S 0.27 tolerated(0.46) benign(0.15) TCGA-06-5416-01 3 169644810 169644810 G A SAMD7 Missense_Mutation p.E254K 0.30 deleterious(0.04) benign(0.008) TCGA-06-5416-01 3 169663635 169663635 G T RP11-379K17.4 RNA 0.10 TCGA-06-5416-01 3 169663966 169663966 G T RP11-379K17.4 RNA 0.19 TCGA-06-5416-01 3 169664185 169664185 C A RP11-379K17.4 RNA 0.11 TCGA-06-5416-01 3 169664204 169664204 C A RP11-379K17.4 RNA 0.19 TCGA-06-5416-01 3 169801952 169801952 C T GPR160 Silent p.F64F 0.29 TCGA-06-5416-01 3 169802892 169802892 G T GPR160 3'UTR 0.24 TCGA-06-5416-01 3 169820371 169820371 C T PHC3 Missense_Mutation p.R910K 0.13 tolerated(0.2) benign(0.023) TCGA-06-5416-01 3 169854434 169854434 C T PHC3 Missense_Mutation p.R231H 0.19 deleterious(0.04) possibly_damaging(0.885) TCGA-06-5416-01 3 169953103 169953103 G A PRKCI Missense_Mutation p.E63K 0.37 tolerated(1) benign(0.039) TCGA-06-5416-01 3 170078081 170078081 G A SKIL 5'UTR 0.15 TCGA-06-5416-01 3 170078605 170078605 A C SKIL Missense_Mutation p.E162D 0.19 deleterious(0) benign(0.182) TCGA-06-5416-01 3 170099052 170099052 G T SKIL Missense_Mutation p.M373I 0.34 tolerated(0.13) benign(0) TCGA-06-5416-01 3 170108880 170108880 G A SKIL Silent p.Q576Q 0.60 TCGA-06-5416-01 3 170140991 170140991 G A CLDN11 Silent p.S89S 0.16 TCGA-06-5416-01 3 170201236 170201236 C A SLC7A14 Missense_Mutation p.A328S 0.15 tolerated(0.4) benign(0.027) TCGA-06-5416-01 3 170216662 170216662 C A SLC7A14 Nonsense_Mutation p.E185* 0.24 TCGA-06-5416-01 3 17052007 17052007 C A PLCL2 Missense_Mutation p.P264Q 0.50 deleterious(0.01) possibly_damaging(0.566) TCGA-06-5416-01 3 17052089 17052089 C T PLCL2 Silent p.F291F 0.56 TCGA-06-5416-01 3 17052090 17052090 G A PLCL2 Missense_Mutation p.D292N 0.56 tolerated(0.06) probably_damaging(0.98) TCGA-06-5416-01 3 17052532 17052532 T C PLCL2 Missense_Mutation p.I439T 0.28 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 3 170716931 170716931 G A SLC2A2 Nonsense_Mutation p.R365* 0.21 TCGA-06-5416-01 3 170723074 170723074 G A SLC2A2 Silent p.G321G 0.49 TCGA-06-5416-01 3 170723858 170723858 G T SLC2A2 Missense_Mutation p.L217M 0.54 tolerated(0.19) benign(0.038) TCGA-06-5416-01 3 170736378 170736378 G T SLC2A2 Missense_Mutation p.A17D 0.14 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 3 170783990 170783990 C T TNIK Missense_Mutation p.E1329K 0.32 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 170802051 170802051 G A TNIK Missense_Mutation p.S1021L 0.49 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 3 170824485 170824485 A G TNIK Intron 0.31 TCGA-06-5416-01 3 170828506 170828506 G A TNIK Nonsense_Mutation p.R761* 0.24 TCGA-06-5416-01 3 170906619 170906619 C T TNIK Missense_Mutation p.D171N 0.34 deleterious(0) unknown(0) TCGA-06-5416-01 3 171329422 171329422 G T PLD1 Intron 0.17 TCGA-06-5416-01 3 171379892 171379892 G A PLD1 Silent p.Y766Y 0.33 TCGA-06-5416-01 3 171965514 171965514 G A FNDC3B Silent p.P152P 0.39 TCGA-06-5416-01 3 171969286 171969286 C T FNDC3B Nonsense_Mutation p.R249* 0.46 TCGA-06-5416-01 3 172162985 172162985 G T GHSR Missense_Mutation p.S356Y 0.15 tolerated(0.1) benign(0.405) TCGA-06-5416-01 3 172166057 172166057 G T GHSR Silent p.T49T 0.15 TCGA-06-5416-01 3 172224422 172224422 C T TNFSF10 Missense_Mutation p.E236K 0.33 deleterious(0.02) benign(0.333) TCGA-06-5416-01 3 172224631 172224631 T G TNFSF10 Missense_Mutation p.N166T 0.52 deleterious(0) possibly_damaging(0.767) TCGA-06-5416-01 3 172428876 172428876 C T NCEH1 5'UTR 0.32 TCGA-06-5416-01 3 172607415 172607415 G A SPATA16 Missense_Mutation p.T552I 0.20 tolerated(0.18) possibly_damaging(0.702) TCGA-06-5416-01 3 172674552 172674552 C T SPATA16 Silent p.A332A 0.26 TCGA-06-5416-01 3 172766884 172766884 G T SPATA16 Missense_Mutation p.L205I 0.20 deleterious(0.03) possibly_damaging(0.567) TCGA-06-5416-01 3 172835168 172835168 C A SPATA16 Missense_Mutation p.K118N 0.54 deleterious(0.04) possibly_damaging(0.607) TCGA-06-5416-01 3 173996926 173996926 C A NLGN1 Missense_Mutation p.L379I 0.38 deleterious(0.02) probably_damaging(0.96) TCGA-06-5416-01 3 173998326 173998326 C T NLGN1 Missense_Mutation p.R569C 0.18 deleterious(0.03) probably_damaging(0.991) TCGA-06-5416-01 3 17444686 17444686 C A TBC1D5 Missense_Mutation p.D166Y 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 17447926 17447926 C T TBC1D5 Missense_Mutation p.R87H 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 174814871 174814871 G A NAALADL2 Missense_Mutation p.R112Q 0.21 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 3 174951720 174951720 G T NAALADL2 Splice_Site p.X182_splice 0.22 TCGA-06-5416-01 3 178785553 178785553 C T ZMAT3 5'UTR 0.49 TCGA-06-5416-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.30 tolerated(0.06) probably_damaging(0.998) TCGA-06-5416-01 3 178921393 178921393 G T PIK3CA Missense_Mutation p.S292I 0.18 deleterious(0.03) possibly_damaging(0.859) TCGA-06-5416-01 3 179069792 179069792 C T MFN1 Missense_Mutation p.R73W 0.48 deleterious(0) probably_damaging(0.955) TCGA-06-5416-01 3 179076764 179076764 G A MFN1 Missense_Mutation p.G129R 0.15 deleterious(0.01) possibly_damaging(0.612) TCGA-06-5416-01 3 179085308 179085308 C T MFN1 Missense_Mutation p.R279C 0.34 deleterious(0) probably_damaging(0.953) TCGA-06-5416-01 3 179094923 179094923 A C MFN1 Missense_Mutation p.K397N 0.16 deleterious(0) possibly_damaging(0.881) TCGA-06-5416-01 3 179134286 179134286 T G GNB4 Missense_Mutation p.N88H 0.59 tolerated(0.06) benign(0.055) TCGA-06-5416-01 3 179306713 179306713 G T MRPL47 Missense_Mutation p.L234I 0.46 tolerated(0.09) possibly_damaging(0.786) TCGA-06-5416-01 3 179319545 179319545 T G MRPL47 Missense_Mutation p.K93T 0.35 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 179478899 179478899 G T USP13 Splice_Site p.X650_splice 0.13 TCGA-06-5416-01 3 179481893 179481893 C T USP13 Silent p.I732I 0.13 TCGA-06-5416-01 3 179537731 179537731 C A PEX5L Nonsense_Mutation p.E286* 0.18 TCGA-06-5416-01 3 179593215 179593215 G A PEX5L Nonsense_Mutation p.R186* 0.33 TCGA-06-5416-01 3 179754470 179754470 G T PEX5L 5'UTR 0.19 TCGA-06-5416-01 3 180327989 180327989 T C TTC14 Missense_Mutation p.Y658H 0.61 tolerated_low_confidence(0.44) unknown(0) TCGA-06-5416-01 3 180334348 180334348 C A CCDC39 Nonsense_Mutation p.E848* 0.63 TCGA-06-5416-01 3 180377254 180377254 C A CCDC39 Missense_Mutation p.D242Y 0.46 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 3 180377465 180377465 C A CCDC39 Missense_Mutation p.Q203H 0.44 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 3 180667078 180667078 C T FXR1 Missense_Mutation p.R193C 0.54 tolerated(0.06) benign(0.058) TCGA-06-5416-01 3 180688050 180688050 C T FXR1 Missense_Mutation p.R503C 0.60 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 3 182553890 182553890 G A ATP11B Missense_Mutation p.R128Q 0.54 tolerated(0.39) possibly_damaging(0.821) TCGA-06-5416-01 3 182583357 182583357 C T ATP11B Silent p.P438P 0.40 TCGA-06-5416-01 3 182584192 182584192 C A ATP11B Missense_Mutation p.S527Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 182681713 182681713 G A DCUN1D1 Silent p.C115C 0.18 TCGA-06-5416-01 3 182683387 182683387 C T DCUN1D1 Missense_Mutation p.R53Q 0.39 tolerated(0.33) benign(0.006) TCGA-06-5416-01 3 182759407 182759407 G A MCCC1 Silent p.L405L 0.20 TCGA-06-5416-01 3 182788789 182788789 C T MCCC1 Silent p.P253P 0.21 TCGA-06-5416-01 3 182810259 182810260 - T MCCC1 Frame_Shift_Ins p.L71Tfs*10 0.36 TCGA-06-5416-01 3 182871951 182871951 T C LAMP3 Missense_Mutation p.N93S 0.14 tolerated(1) benign(0) TCGA-06-5416-01 3 183013223 183013223 C A MCF2L2 Nonsense_Mutation p.E514* 0.31 TCGA-06-5416-01 3 183035999 183035999 C T MCF2L2 Missense_Mutation p.E204K 0.38 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 3 183209862 183209862 G T KLHL6 Silent p.I573I 0.32 TCGA-06-5416-01 3 183396949 183396949 G A KLHL24 Missense_Mutation p.D560N 0.29 tolerated(0.35) benign(0.162) TCGA-06-5416-01 3 183508607 183508607 C A YEATS2 Missense_Mutation p.S979Y 0.43 deleterious_low_confidence(0) benign(0.248) TCGA-06-5416-01 3 183560116 183560116 C T PARL Missense_Mutation p.E243K 0.16 deleterious(0) probably_damaging(0.928) TCGA-06-5416-01 3 183660701 183660701 G T ABCC5 Missense_Mutation p.L1170M 0.48 deleterious(0.02) probably_damaging(0.971) TCGA-06-5416-01 3 183696331 183696331 G T ABCC5 Missense_Mutation p.S419Y 0.57 deleterious(0.01) possibly_damaging(0.629) TCGA-06-5416-01 3 183696422 183696422 G A ABCC5 Missense_Mutation p.R389C 0.16 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 3 183699621 183699621 G A ABCC5 Silent p.C347C 0.54 TCGA-06-5416-01 3 183700357 183700357 C T ABCC5 Missense_Mutation p.G294D 0.43 tolerated(0.07) probably_damaging(0.989) TCGA-06-5416-01 3 183700656 183700656 T C ABCC5 Missense_Mutation p.Y244C 0.37 deleterious(0) possibly_damaging(0.622) TCGA-06-5416-01 3 183756368 183756368 A C HTR3D Missense_Mutation p.Q364P 0.14 deleterious(0.03) probably_damaging(0.979) TCGA-06-5416-01 3 183823142 183823142 A G HTR3E Missense_Mutation p.E242G 0.31 deleterious(0.01) possibly_damaging(0.6) TCGA-06-5416-01 3 183824323 183824323 G T HTR3E Nonsense_Mutation p.E431* 0.14 TCGA-06-5416-01 3 183854598 183854598 G A EIF2B5 Intron 0.53 TCGA-06-5416-01 3 183897999 183897999 C T AP2M1 Missense_Mutation p.A128V 0.43 tolerated(1) benign(0.003) TCGA-06-5416-01 3 183898757 183898757 C T AP2M1 Missense_Mutation p.L184F 0.54 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 18393529 18393529 G A SATB1 Silent p.G578G 0.26 TCGA-06-5416-01 3 183960442 183960442 C T ALG3 Missense_Mutation p.E393K 0.48 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 183963300 183963300 C T ALG3 Missense_Mutation p.A134T 0.27 tolerated(0.12) benign(0.003) TCGA-06-5416-01 3 184002790 184002790 T G ECE2 Missense_Mutation p.F467V 0.21 tolerated(0.6) possibly_damaging(0.593) TCGA-06-5416-01 3 184009212 184009212 C T ECE2 Silent p.F820F 0.21 TCGA-06-5416-01 3 184019394 184019394 C T PSMD2 Missense_Mutation p.R143W 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 184090609 184090609 C T THPO Missense_Mutation p.E252K 0.14 tolerated_low_confidence(0.21) benign(0.002) TCGA-06-5416-01 3 18435996 18435996 G T SATB1 Silent p.I388I 0.55 TCGA-06-5416-01 3 184428741 184428741 G T MAGEF1 Missense_Mutation p.A290D 0.43 deleterious(0.03) possibly_damaging(0.665) TCGA-06-5416-01 3 184429132 184429132 G T MAGEF1 Missense_Mutation p.L160M 0.18 tolerated(0.23) probably_damaging(0.998) TCGA-06-5416-01 3 184586767 184586767 A G VPS8 Missense_Mutation p.T514A 0.33 tolerated(0.69) benign(0.002) TCGA-06-5416-01 3 184714261 184714261 G A VPS8 Missense_Mutation p.E1270K 0.56 tolerated(0.18) benign(0.011) TCGA-06-5416-01 3 184922232 184922232 C T EHHADH Silent p.A294A 0.59 TCGA-06-5416-01 3 184935969 184935969 A G EHHADH Missense_Mutation p.S175P 0.49 tolerated(0.13) possibly_damaging(0.653) TCGA-06-5416-01 3 185155354 185155354 G T MAP3K13 Nonsense_Mutation p.E199* 0.20 TCGA-06-5416-01 3 185183551 185183551 C T MAP3K13 Missense_Mutation p.R469C 0.34 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 185307946 185307946 G T SENP2 Missense_Mutation p.R49I 0.53 deleterious(0) possibly_damaging(0.572) TCGA-06-5416-01 3 185434400 185434400 C T C3orf65 Missense_Mutation p.S78L 0.30 deleterious_low_confidence(0.03) benign(0.075) TCGA-06-5416-01 3 185636179 185636179 C T TRA2B Missense_Mutation p.R277H 0.14 tolerated_low_confidence(0.07) unknown(0) TCGA-06-5416-01 3 185639833 185639833 G A TRA2B Missense_Mutation p.P202S 0.41 deleterious(0.01) probably_damaging(0.95) TCGA-06-5416-01 3 185641742 185641742 C A TRA2B Missense_Mutation p.V122L 0.32 deleterious(0.01) possibly_damaging(0.631) TCGA-06-5416-01 3 185906114 185906114 G T DGKG Missense_Mutation p.L658I 0.53 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 3 185929636 185929636 G A DGKG Missense_Mutation p.S622L 0.35 deleterious(0) probably_damaging(0.914) TCGA-06-5416-01 3 185990133 185990133 C A DGKG Splice_Site p.X304_splice 0.53 TCGA-06-5416-01 3 186256349 186256349 T C CRYGS 3'UTR 0.61 TCGA-06-5416-01 3 186256517 186256517 C T CRYGS Missense_Mutation p.A169T 0.26 tolerated(0.51) benign(0.026) TCGA-06-5416-01 3 186281983 186281983 C A TBCCD1 Nonsense_Mutation p.E46* 0.13 TCGA-06-5416-01 3 186289925 186289925 C A DNAJB11 Missense_Mutation p.S37Y 0.05 deleterious(0) possibly_damaging(0.58) TCGA-06-5416-01 3 186303347 186303347 G T DNAJB11 3'UTR 0.73 TCGA-06-5416-01 3 186389561 186389561 G A HRG Missense_Mutation p.E181K 0.34 tolerated(0.1) benign(0.305) TCGA-06-5416-01 3 186395631 186395631 C T HRG Missense_Mutation p.P513S 0.15 tolerated(0.67) benign(0.004) TCGA-06-5416-01 3 186460012 186460012 G A KNG1 Silent p.T609T 0.53 TCGA-06-5416-01 3 186507073 186507073 G A EIF4A2 3'UTR 0.34 TCGA-06-5416-01 3 186510313 186510313 A G RFC4 Missense_Mutation p.I214T 0.55 deleterious(0) possibly_damaging(0.86) TCGA-06-5416-01 3 186570871 186570871 A G ADIPOQ Silent p.L8L 0.56 TCGA-06-5416-01 3 186760777 186760777 T C ST6GAL1 Missense_Mutation p.W96R 0.37 probably_damaging(0.994) TCGA-06-5416-01 3 186791971 186791971 T G ST6GAL1 Missense_Mutation p.F277V 0.32 possibly_damaging(0.472) TCGA-06-5416-01 3 186793413 186793413 G A ST6GAL1 Missense_Mutation p.R348H 0.57 benign(0.288) TCGA-06-5416-01 3 186953542 186953542 T C MASP1 Missense_Mutation p.N706S 0.15 tolerated(0.11) benign(0.187) TCGA-06-5416-01 3 186978615 186978615 T C MASP1 Missense_Mutation p.D154G 0.37 deleterious(0.01) probably_damaging(0.979) TCGA-06-5416-01 3 187446846 187446846 G A BCL6 Silent p.I449I 0.43 TCGA-06-5416-01 3 188590548 188590548 C T LPP Silent p.C569C 0.47 TCGA-06-5416-01 3 189028319 189028319 A C TPRG1 Missense_Mutation p.E208D 0.54 tolerated(0.41) benign(0.003) TCGA-06-5416-01 3 189038475 189038475 G A TPRG1 Missense_Mutation p.G232R 0.42 tolerated(0.35) benign(0.344) TCGA-06-5416-01 3 189038563 189038563 G A TPRG1 Missense_Mutation p.R261H 0.12 deleterious(0.05) possibly_damaging(0.88) TCGA-06-5416-01 3 189585656 189585656 T G TP63 Missense_Mutation p.F306C 0.44 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 3 189608668 189608668 G T TP63 Missense_Mutation p.M581I 0.54 tolerated(1) benign(0.007) TCGA-06-5416-01 3 190122675 190122675 C T CLDN16 Silent p.V184V 0.47 TCGA-06-5416-01 3 190126248 190126249 - T CLDN16 Frame_Shift_Ins p.L248Ffs*14 0.24 TCGA-06-5416-01 3 191098485 191098485 G A CCDC50 Missense_Mutation p.V368M 0.10 tolerated(0.18) possibly_damaging(0.677) TCGA-06-5416-01 3 191098495 191098495 G T CCDC50 Missense_Mutation p.R371I 0.29 deleterious(0) possibly_damaging(0.867) TCGA-06-5416-01 3 191888260 191888260 C T FGF12 Silent p.P200P 0.19 TCGA-06-5416-01 3 192516411 192516411 C T MB21D2 Missense_Mutation p.A414T 0.22 tolerated(0.1) benign(0.135) TCGA-06-5416-01 3 192517242 192517242 C T MB21D2 Missense_Mutation p.D137N 0.12 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 3 192635457 192635457 T G MB21D2 Missense_Mutation p.E58A 0.30 deleterious(0.04) possibly_damaging(0.694) TCGA-06-5416-01 3 192973503 192973503 G A HRASLS Missense_Mutation p.E127K 0.35 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 3 192993002 192993002 C A ATP13A5 Missense_Mutation p.K1162N 0.51 deleterious(0) benign(0.287) TCGA-06-5416-01 3 193002724 193002724 G A ATP13A5 Nonsense_Mutation p.R1069* 0.26 TCGA-06-5416-01 3 193028443 193028443 C A ATP13A5 Nonsense_Mutation p.E837* 0.30 TCGA-06-5416-01 3 193125141 193125141 G T ATP13A4 Silent p.I1113I 0.48 TCGA-06-5416-01 3 193160228 193160228 G T ATP13A4 Missense_Mutation p.S757Y 0.51 deleterious(0) possibly_damaging(0.701) TCGA-06-5416-01 3 193209160 193209160 G A ATP13A4 Silent p.I187I 0.17 TCGA-06-5416-01 3 193854429 193854429 A C HES1 Missense_Mutation p.K44N 0.47 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 194062056 194062056 G A CPN2 Missense_Mutation p.P459L 0.14 tolerated(1) benign(0) TCGA-06-5416-01 3 194080546 194080546 G A LRRC15 Silent p.F415F 0.31 TCGA-06-5416-01 3 194081424 194081424 G A LRRC15 Missense_Mutation p.P123S 0.40 tolerated(0.07) possibly_damaging(0.594) TCGA-06-5416-01 3 194180267 194180267 G A ATP13A3 Missense_Mutation p.R138C 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 3 194362826 194362826 G A LSG1 Missense_Mutation p.R650C 0.53 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 194386314 194386314 G A LSG1 Missense_Mutation p.R165C 0.19 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 3 195000113 195000113 C T ACAP2 Missense_Mutation p.A761T 0.15 deleterious(0) possibly_damaging(0.53) TCGA-06-5416-01 3 195245827 195245827 C A PPP1R2 Nonsense_Mutation p.E187* 0.31 TCGA-06-5416-01 3 195250493 195250493 G A PPP1R2 Nonsense_Mutation p.R134* 0.51 TCGA-06-5416-01 3 195453088 195453088 T C MUC20 Silent p.V538V 0.15 TCGA-06-5416-01 3 195453309 195453309 C A MUC20 Missense_Mutation p.P612Q 0.30 tolerated(0.34) unknown(0) TCGA-06-5416-01 3 195498637 195498637 G T MUC4 Missense_Mutation p.F4376L 0.36 benign(0.063) TCGA-06-5416-01 3 195505689 195505689 C A MUC4 Silent p.S4254S 0.13 TCGA-06-5416-01 3 195517464 195517464 G A MUC4 Silent p.S329S 0.35 TCGA-06-5416-01 3 195518295 195518295 C T MUC4 Silent p.A52A 0.45 TCGA-06-5416-01 3 19551880 19551880 C A KCNH8 Missense_Mutation p.S689Y 0.31 tolerated(0.06) benign(0.241) TCGA-06-5416-01 3 195605956 195605956 G A TNK2 Silent p.Y389Y 0.48 TCGA-06-5416-01 3 195711034 195711034 G T SDHAP1 RNA 0.19 TCGA-06-5416-01 3 195778877 195778877 C A TFRC Missense_Mutation p.W740L 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 195925262 195925262 C T ZDHHC19 Silent p.P278P 0.35 TCGA-06-5416-01 3 196281186 196281186 C A WDR53 Nonsense_Mutation p.E325* 0.20 TCGA-06-5416-01 3 196387660 196387660 C T NRROS Silent p.D382D 0.24 TCGA-06-5416-01 3 196613350 196613350 C T SENP5 Missense_Mutation p.A433V 0.16 tolerated(0.5) benign(0.05) TCGA-06-5416-01 3 196613394 196613394 C A SENP5 Missense_Mutation p.L448I 0.13 tolerated(0.16) benign(0.092) TCGA-06-5416-01 3 196749963 196749963 C T MFI2 Missense_Mutation p.G170D 0.25 deleterious(0.02) benign(0.219) TCGA-06-5416-01 3 196846398 196846398 G T DLG1 Missense_Mutation p.S423Y 0.44 tolerated(1) benign(0) TCGA-06-5416-01 3 197430431 197430431 G A KIAA0226 Silent p.I186I 0.26 TCGA-06-5416-01 3 197483300 197483300 A C FYTTD1 Missense_Mutation p.D36A 0.17 deleterious(0) possibly_damaging(0.737) TCGA-06-5416-01 3 197508794 197508794 G T FYTTD1 3'UTR 0.09 TCGA-06-5416-01 3 197619545 197619545 G T IQCG Missense_Mutation p.A350D 0.32 deleterious(0.01) benign(0.04) TCGA-06-5416-01 3 197640647 197640647 G T IQCG Intron 0.37 TCGA-06-5416-01 3 197640770 197640770 G T IQCG Silent p.L290L 0.15 TCGA-06-5416-01 3 197678136 197678136 G A RPL35A Missense_Mutation p.E40K 0.17 tolerated(0.31) benign(0.038) TCGA-06-5416-01 3 197687078 197687078 G T LMLN 5'Flank 0.52 TCGA-06-5416-01 3 197751562 197751562 G T LMLN Missense_Mutation p.G557V 0.35 deleterious(0) probably_damaging(0.96) TCGA-06-5416-01 3 197762722 197762722 G T LMLN Missense_Mutation p.G596C 0.17 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 3 19921141 19921141 C A EFHB Missense_Mutation p.K828N 0.21 deleterious(0.01) benign(0.045) TCGA-06-5416-01 3 19975320 19975320 A C EFHB Missense_Mutation p.F64C 0.30 tolerated_low_confidence(0.08) benign(0.002) TCGA-06-5416-01 3 19975432 19975432 G A EFHB Missense_Mutation p.P27S 0.59 tolerated_low_confidence(0.08) benign(0.014) TCGA-06-5416-01 3 20164231 20164231 C T KAT2B Missense_Mutation p.P450S 0.30 tolerated(0.28) benign(0.273) TCGA-06-5416-01 3 23258785 23258785 A G UBE2E2 Missense_Mutation p.D70G 0.22 deleterious(0) possibly_damaging(0.817) TCGA-06-5416-01 3 24018957 24018957 T C NR1D2 3'UTR 0.31 TCGA-06-5416-01 3 24231608 24231608 G T THRB Silent p.V80V 0.28 TCGA-06-5416-01 3 25470123 25470123 A G RARB 5'UTR 0.24 TCGA-06-5416-01 3 25835605 25835605 G T OXSM Missense_Mutation p.D334Y 0.30 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 26751610 26751610 C T LRRC3B Silent p.C149C 0.36 TCGA-06-5416-01 3 27183012 27183012 C A NEK10 Missense_Mutation p.Q1034H 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 27233672 27233672 C A NEK10 Missense_Mutation p.D785Y 0.28 deleterious(0) possibly_damaging(0.778) TCGA-06-5416-01 3 27350469 27350469 C A NEK10 Missense_Mutation p.D222Y 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 27446344 27446344 T G SLC4A7 Missense_Mutation p.E675D 0.34 deleterious(0) possibly_damaging(0.831) TCGA-06-5416-01 3 27463186 27463186 G A SLC4A7 Missense_Mutation p.P442S 0.18 deleterious(0.03) probably_damaging(0.943) TCGA-06-5416-01 3 27759212 27759212 G A EOMES Silent p.Y470Y 0.31 TCGA-06-5416-01 3 28368408 28368408 C A AZI2 Missense_Mutation p.K227N 0.15 deleterious(0.05) probably_damaging(0.933) TCGA-06-5416-01 3 28378286 28378286 T A AZI2 Missense_Mutation p.E177V 0.29 deleterious(0) possibly_damaging(0.548) TCGA-06-5416-01 3 28476749 28476749 A C ZCWPW2 Missense_Mutation p.I161L 0.25 tolerated(0.68) benign(0.01) TCGA-06-5416-01 3 28555607 28555607 G T ZCWPW2 Missense_Mutation p.R237M 0.30 deleterious(0) possibly_damaging(0.708) TCGA-06-5416-01 3 29804409 29804409 C A RBMS3 Missense_Mutation p.S189Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 29925694 29925694 G T RBMS3 Missense_Mutation p.Q262H 0.21 tolerated(0.08) probably_damaging(0.995) TCGA-06-5416-01 3 30713315 30713315 G A TGFBR2 Missense_Mutation p.E239K 0.42 tolerated(0.17) benign(0.064) TCGA-06-5416-01 3 30713561 30713561 G T TGFBR2 Missense_Mutation p.D321Y 0.46 tolerated(0.06) possibly_damaging(0.55) TCGA-06-5416-01 3 30713843 30713843 G A TGFBR2 Missense_Mutation p.D415N 0.24 tolerated(0.18) probably_damaging(0.989) TCGA-06-5416-01 3 3084089 3084089 C T CNTN4 Nonsense_Mutation p.R832* 0.20 TCGA-06-5416-01 3 3139680 3139680 C T IL5RA Missense_Mutation p.A195T 0.21 deleterious(0.03) probably_damaging(0.934) TCGA-06-5416-01 3 3182326 3182326 T C TRNT1 Missense_Mutation p.F159L 0.50 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 3 32032578 32032578 C T ZNF860 3'UTR 0.23 TCGA-06-5416-01 3 3209387 3209387 C A CRBN Missense_Mutation p.Q206H 0.21 tolerated(0.67) benign(0.004) TCGA-06-5416-01 3 3209403 3209403 G A CRBN Missense_Mutation p.S201F 0.57 deleterious(0.01) probably_damaging(0.93) TCGA-06-5416-01 3 32411587 32411587 C T CMTM8 3'UTR 0.28 TCGA-06-5416-01 3 32495773 32495773 G T CMTM7 3'UTR 0.34 TCGA-06-5416-01 3 32529442 32529442 C T CMTM6 Silent p.E134E 0.23 TCGA-06-5416-01 3 32570074 32570074 G A DYNC1LI1 Silent p.G442G 0.26 TCGA-06-5416-01 3 32804401 32804401 C A CNOT10 Intron 0.19 TCGA-06-5416-01 3 32932683 32932683 G A TRIM71 Missense_Mutation p.A663T 0.34 tolerated(0.49) benign(0.041) TCGA-06-5416-01 3 33038620 33038620 C T GLB1 Missense_Mutation p.D651N 0.58 tolerated(0.08) benign(0.006) TCGA-06-5416-01 3 33065786 33065786 G T GLB1 Missense_Mutation p.P367Q 0.19 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 3 33249385 33249385 C T SUSD5 Silent p.Q108Q 0.14 TCGA-06-5416-01 3 33558533 33558533 A C CLASP2 Silent p.V1315V 0.07 TCGA-06-5416-01 3 33558575 33558575 G T CLASP2 Silent p.L1301L 0.21 TCGA-06-5416-01 3 33618712 33618712 C T CLASP2 Intron 0.21 TCGA-06-5416-01 3 33623331 33623331 G A CLASP2 Missense_Mutation p.R778C 0.51 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 3 33738353 33738353 C T CLASP2 Missense_Mutation p.A90T 0.68 deleterious(0.02) benign(0.026) TCGA-06-5416-01 3 36547242 36547242 C T STAC Missense_Mutation p.S279F 0.23 deleterious(0.03) benign(0.309) TCGA-06-5416-01 3 36778738 36778738 C A DCLK3 Missense_Mutation p.K471N 0.37 tolerated(0.06) benign(0.083) TCGA-06-5416-01 3 36874430 36874430 C T TRANK1 Missense_Mutation p.R2171H 0.63 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 3 36898695 36898695 A C TRANK1 Missense_Mutation p.S796A 0.04 tolerated(0.23) benign(0.1) TCGA-06-5416-01 3 37033947 37033947 G T EPM2AIP1 Missense_Mutation p.L208I 0.31 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 3 37337597 37337597 G A GOLGA4 Missense_Mutation p.R256Q 0.50 probably_damaging(0.999) TCGA-06-5416-01 3 37366492 37366492 G A GOLGA4 Missense_Mutation p.E1061K 0.32 benign(0.03) TCGA-06-5416-01 3 37367284 37367284 G T GOLGA4 Nonsense_Mutation p.E1325* 0.15 TCGA-06-5416-01 3 37367703 37367703 C A GOLGA4 Missense_Mutation p.F1464L 0.27 benign(0.024) TCGA-06-5416-01 3 37778457 37778457 C T ITGA9 Silent p.F739F 0.30 TCGA-06-5416-01 3 37792036 37792036 G T ITGA9 Missense_Mutation p.E839D 0.53 tolerated(0.25) benign(0.253) TCGA-06-5416-01 3 38050645 38050645 G A PLCD1 Silent p.N558N 0.25 TCGA-06-5416-01 3 38125694 38125694 C T DLEC1 Nonsense_Mutation p.R407* 0.21 TCGA-06-5416-01 3 38141812 38141812 G A DLEC1 Silent p.Q920Q 0.54 TCGA-06-5416-01 3 38153839 38153839 A G DLEC1 Missense_Mutation p.N1218S 0.25 tolerated(0.45) benign(0.008) TCGA-06-5416-01 3 38167343 38167343 C T ACAA1 Missense_Mutation p.E343K 0.55 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 38349171 38349171 G A SLC22A14 Silent p.S245S 0.26 TCGA-06-5416-01 3 38359838 38359838 G T SLC22A14 3'UTR 0.19 TCGA-06-5416-01 3 38417643 38417643 G A XYLB Missense_Mutation p.R347H 0.22 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 3 38420768 38420768 G A XYLB Missense_Mutation p.R409Q 0.55 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 3 38601896 38601896 G A SCN5A Silent p.G1329G 0.30 TCGA-06-5416-01 3 38622481 38622481 C A SCN5A Missense_Mutation p.D1057Y 0.20 deleterious(0.05) benign(0.007) TCGA-06-5416-01 3 38639247 38639247 G A SCN5A Silent p.F745F 0.29 TCGA-06-5416-01 3 38640473 38640473 G A SCN5A Silent p.F653F 0.59 TCGA-06-5416-01 3 38645391 38645391 G A SCN5A Missense_Mutation p.R568C 0.38 deleterious(0.02) possibly_damaging(0.748) TCGA-06-5416-01 3 38648235 38648235 G A SCN5A Silent p.F355F 0.30 TCGA-06-5416-01 3 38662410 38662410 G A SCN5A Nonsense_Mutation p.R179* 0.21 TCGA-06-5416-01 3 38798523 38798523 G A SCN10A Missense_Mutation p.R360C 0.07 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 3 38805007 38805007 G A SCN10A Missense_Mutation p.S227F 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 38812784 38812784 G A SCN10A Silent p.S195S 0.26 TCGA-06-5416-01 3 38835413 38835413 G A SCN10A Missense_Mutation p.A30V 0.33 tolerated(0.08) benign(0.196) TCGA-06-5416-01 3 3887397 3887397 G A LRRN1 Missense_Mutation p.E358K 0.52 deleterious(0.03) benign(0.109) TCGA-06-5416-01 3 3888193 3888193 T G LRRN1 Missense_Mutation p.I623S 0.28 tolerated(0.85) benign(0.001) TCGA-06-5416-01 3 38889021 38889021 G T SCN11A Missense_Mutation p.L1514M 0.16 deleterious(0) possibly_damaging(0.78) TCGA-06-5416-01 3 38891820 38891820 G A SCN11A Intron 0.27 TCGA-06-5416-01 3 38913000 38913000 G A SCN11A Missense_Mutation p.S1232F 0.26 tolerated(0.75) benign(0.224) TCGA-06-5416-01 3 38936328 38936329 - A SCN11A Frame_Shift_Ins p.C844Lfs*8 0.20 TCGA-06-5416-01 3 39104641 39104641 G A WDR48 Missense_Mutation p.R50Q 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 3 39121231 39121231 C T WDR48 Missense_Mutation p.L369F 0.58 deleterious(0.01) probably_damaging(0.961) TCGA-06-5416-01 3 39136163 39136163 C T WDR48 Nonsense_Mutation p.R655* 0.06 TCGA-06-5416-01 3 39151595 39151595 C T TTC21A Missense_Mutation p.A78V 0.29 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 3 39162558 39162558 C T TTC21A Missense_Mutation p.S332L 0.29 tolerated(0.08) benign(0.1) TCGA-06-5416-01 3 39166853 39166853 T C TTC21A Missense_Mutation p.S416P 0.21 tolerated(0.22) possibly_damaging(0.786) TCGA-06-5416-01 3 39226454 39226454 G A XIRP1 Missense_Mutation p.R1495W 0.25 deleterious(0) possibly_damaging(0.65) TCGA-06-5416-01 3 39555000 39555000 G A MOBP 3'UTR 0.14 TCGA-06-5416-01 3 40251349 40251349 C T MYRIP Missense_Mutation p.S557L 0.46 tolerated(0.66) benign(0.003) TCGA-06-5416-01 3 40468964 40468964 G A ENTPD3 Missense_Mutation p.E519K 0.25 tolerated_low_confidence(0.26) benign(0.058) TCGA-06-5416-01 3 40573694 40573694 C T ZNF621 Nonsense_Mutation p.R145* 0.56 TCGA-06-5416-01 3 40574041 40574041 G T ZNF621 Missense_Mutation p.E260D 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-06-5416-01 3 41275099 41275099 G A CTNNB1 Missense_Mutation p.G422E 0.04 deleterious(0.03) probably_damaging(0.965) TCGA-06-5416-01 3 42244228 42244228 C T TRAK1 Silent p.I576I 0.23 TCGA-06-5416-01 3 42251393 42251393 G A TRAK1 Missense_Mutation p.D627N 0.54 deleterious(0) possibly_damaging(0.871) TCGA-06-5416-01 3 42265046 42265046 C T TRAK1 Silent p.G893G 0.59 TCGA-06-5416-01 3 42448358 42448358 C T LYZL4 Missense_Mutation p.R91H 0.22 tolerated(0.23) possibly_damaging(0.878) TCGA-06-5416-01 3 42572417 42572417 C T VIPR1 Silent p.I261I 0.28 TCGA-06-5416-01 3 42679625 42679625 A G NKTR Missense_Mutation p.D810G 0.27 deleterious_low_confidence(0) probably_damaging(0.977) TCGA-06-5416-01 3 42680238 42680238 T A NKTR Missense_Mutation p.F1014L 0.31 deleterious_low_confidence(0) possibly_damaging(0.899) TCGA-06-5416-01 3 42681013 42681013 C T NKTR Missense_Mutation p.R1273W 0.53 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-06-5416-01 3 42681188 42681188 C A NKTR Missense_Mutation p.S1331Y 0.27 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 3 42703048 42703048 C T ZBTB47 Silent p.Y515Y 0.26 TCGA-06-5416-01 3 42739761 42739761 C T HHATL Missense_Mutation p.S189N 0.23 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 42772080 42772080 A G CCDC13 Missense_Mutation p.F533L 0.59 tolerated(0.44) benign(0.014) TCGA-06-5416-01 3 42781134 42781134 C T CCDC13 Missense_Mutation p.A386T 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-06-5416-01 3 42788822 42788822 G A CCDC13 Missense_Mutation p.A216V 0.57 deleterious(0.04) possibly_damaging(0.86) TCGA-06-5416-01 3 42906390 42906390 C A ACKR2 Silent p.I132I 0.25 TCGA-06-5416-01 3 42906724 42906724 G A ACKR2 Missense_Mutation p.G244S 0.26 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 3 43121723 43121723 T C POMGNT2 Missense_Mutation p.T401A 0.11 tolerated(0.09) possibly_damaging(0.471) TCGA-06-5416-01 3 43121982 43121982 G A POMGNT2 Silent p.F314F 0.34 TCGA-06-5416-01 3 43381895 43381895 C T SNRK Missense_Mutation p.P283L 0.05 deleterious(0.01) probably_damaging(0.957) TCGA-06-5416-01 3 43389971 43389971 C T SNRK Silent p.I740I 0.21 TCGA-06-5416-01 3 43642002 43642002 G A ANO10 Missense_Mutation p.L71F 0.30 tolerated(0.05) benign(0.03) TCGA-06-5416-01 3 43647304 43647304 G T ANO10 Missense_Mutation p.S14Y 0.20 deleterious(0.05) benign(0.092) TCGA-06-5416-01 3 440720 440720 G T CHL1 Missense_Mutation p.D1092Y 0.21 deleterious(0.01) probably_damaging(0.959) TCGA-06-5416-01 3 44434453 44434453 C T TCAIM Nonsense_Mutation p.Q227* 0.31 TCGA-06-5416-01 3 44490102 44490102 G T ZNF445 Missense_Mutation p.S354Y 0.27 tolerated(0.55) possibly_damaging(0.608) TCGA-06-5416-01 3 44540875 44540875 T A ZNF852 Missense_Mutation p.K465I 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 44541340 44541340 G A ZNF852 Missense_Mutation p.S310F 0.31 tolerated(0.64) probably_damaging(0.956) TCGA-06-5416-01 3 44636052 44636052 C T ZNF660 Missense_Mutation p.R123W 0.31 tolerated(0.08) probably_damaging(0.961) TCGA-06-5416-01 3 44670830 44670830 C T ZNF197 Missense_Mutation p.R62W 0.28 deleterious(0) possibly_damaging(0.817) TCGA-06-5416-01 3 44701252 44701252 G T ZNF35 Missense_Mutation p.R466I 0.20 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 3 44761745 44761745 G A ZNF502 5'UTR 0.35 TCGA-06-5416-01 3 44762829 44762829 C T ZNF502 Nonsense_Mutation p.Q174* 0.20 TCGA-06-5416-01 3 44763241 44763241 C T ZNF502 Missense_Mutation p.T311M 0.28 tolerated(0.11) benign(0.066) TCGA-06-5416-01 3 44776534 44776534 A G ZNF501 Silent p.E207E 0.36 TCGA-06-5416-01 3 44828012 44828012 C T KIF15 Silent p.V195V 0.29 TCGA-06-5416-01 3 44835767 44835767 C T KIF15 Missense_Mutation p.S233L 0.54 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 44893406 44893406 C T KIF15 Silent p.L1312L 0.52 TCGA-06-5416-01 3 44951778 44951778 C T TGM4 Silent p.G508G 0.34 TCGA-06-5416-01 3 44968172 44968172 C T ZDHHC3 3'UTR 0.24 TCGA-06-5416-01 3 45127118 45127118 G T CDCP1 3'UTR 0.51 TCGA-06-5416-01 3 45135092 45135092 T C CDCP1 Missense_Mutation p.D435G 0.28 tolerated(0.47) benign(0.234) TCGA-06-5416-01 3 45153862 45153862 C A CDCP1 Missense_Mutation p.R123I 0.56 deleterious(0) possibly_damaging(0.746) TCGA-06-5416-01 3 45636417 45636417 G A LIMD1 Missense_Mutation p.E16K 0.29 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 3 45872410 45872410 G A LZTFL1 Nonsense_Mutation p.Q199* 0.25 TCGA-06-5416-01 3 45942893 45942893 G A CCR9 Missense_Mutation p.D205N 0.30 tolerated(1) benign(0.002) TCGA-06-5416-01 3 45988802 45988802 G A CXCR6 Missense_Mutation p.A277T 0.45 deleterious(0) probably_damaging(0.949) TCGA-06-5416-01 3 46244783 46244783 G T CCR1 Missense_Mutation p.S341Y 0.26 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 3 46245237 46245237 C T CCR1 Missense_Mutation p.E190K 0.55 tolerated(0.35) benign(0.036) TCGA-06-5416-01 3 46245461 46245461 G A CCR1 Missense_Mutation p.T115I 0.08 tolerated(1) benign(0.003) TCGA-06-5416-01 3 46307076 46307076 C T CCR3 Nonsense_Mutation p.R164* 0.26 TCGA-06-5416-01 3 46415066 46415066 C T CCR5 Nonsense_Mutation p.R225* 0.27 TCGA-06-5416-01 3 46415134 46415134 C A CCR5 Missense_Mutation p.F247L 0.31 tolerated(0.06) possibly_damaging(0.649) TCGA-06-5416-01 3 46415242 46415242 G T CCR5 Missense_Mutation p.E283D 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 46450516 46450516 C T CCRL2 Missense_Mutation p.H328Y 0.27 tolerated(1) benign(0.007) TCGA-06-5416-01 3 46495851 46495851 C T LTF Splice_Site p.X216_splice 0.51 TCGA-06-5416-01 3 46542162 46542162 C T RTP3 Silent p.L158L 0.22 TCGA-06-5416-01 3 46571490 46571490 A C LRRC2 Missense_Mutation p.F226L 0.23 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 3 46574328 46574328 C A LRRC2 Missense_Mutation p.D188Y 0.27 deleterious(0.02) benign(0.133) TCGA-06-5416-01 3 46620799 46620799 G A TDGF1 Missense_Mutation p.E56K 0.31 tolerated(0.08) benign(0.022) TCGA-06-5416-01 3 46712997 46712997 A G ALS2CL Missense_Mutation p.F921S 0.49 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 3 46722850 46722850 C T ALS2CL Missense_Mutation p.R441Q 0.55 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 3 46725317 46725317 C T ALS2CL Silent p.T289T 0.05 TCGA-06-5416-01 3 46750731 46750731 G A TMIE Silent p.V109V 0.29 TCGA-06-5416-01 3 46873479 46873479 T C PRSS42 Missense_Mutation p.M227V 0.26 tolerated(0.11) benign(0.023) TCGA-06-5416-01 3 46904917 46904917 G T MYL3 5'UTR 0.26 TCGA-06-5416-01 3 47040015 47040015 G A NBEAL2 Missense_Mutation p.G1061S 0.58 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 47043209 47043209 C T NBEAL2 Missense_Mutation p.R1559C 0.55 tolerated(0.34) benign(0.001) TCGA-06-5416-01 3 47044713 47044713 G A NBEAL2 Silent p.V1878V 0.33 TCGA-06-5416-01 3 47059133 47059133 G A SETD2 Missense_Mutation p.R2510C 0.29 deleterious(0.01) probably_damaging(0.98) TCGA-06-5416-01 3 4706821 4706821 G T ITPR1 Splice_Site p.X504_splice 0.16 TCGA-06-5416-01 3 47084091 47084091 C T SETD2 Missense_Mutation p.D2400N 0.30 deleterious(0.01) benign(0.032) TCGA-06-5416-01 3 47103784 47103784 C T SETD2 Silent p.P2054P 0.23 TCGA-06-5416-01 3 47108598 47108598 C T SETD2 Missense_Mutation p.R2024Q 0.09 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 3 47139550 47139550 G T SETD2 Missense_Mutation p.F1679L 0.27 deleterious(0.01) probably_damaging(0.985) TCGA-06-5416-01 3 47139559 47139559 C T SETD2 Silent p.Q1676Q 0.24 TCGA-06-5416-01 3 4714983 4714983 C A ITPR1 Missense_Mutation p.H775N 0.25 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 3 47158212 47158212 C T SETD2 Missense_Mutation p.R1496Q 0.53 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 3 47158234 47158234 T C SETD2 Missense_Mutation p.K1489E 0.56 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 3 47162126 47162126 C T SETD2 Missense_Mutation p.D1334N 0.53 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 47164011 47164011 C T SETD2 Silent p.S705S 0.28 TCGA-06-5416-01 3 4725119 4725119 C A ITPR1 Missense_Mutation p.L1056I 0.56 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 3 4726762 4726762 C T ITPR1 Missense_Mutation p.R1177W 0.30 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 3 47307325 47307325 A T KIF9 Missense_Mutation p.S271T 0.31 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 47456137 47456137 G A SCAP Silent p.F1104F 0.24 TCGA-06-5416-01 3 47460972 47460972 C T SCAP Missense_Mutation p.E596K 0.33 tolerated(0.21) benign(0.004) TCGA-06-5416-01 3 47469114 47469114 C T SCAP Missense_Mutation p.D152N 0.59 deleterious(0.02) benign(0.163) TCGA-06-5416-01 3 47484466 47484466 C T SCAP Silent p.R6R 0.32 TCGA-06-5416-01 3 47484504 47484504 C T SCAP 5'UTR 0.34 TCGA-06-5416-01 3 47770567 47770567 C A SMARCC1 Missense_Mutation p.E198D 0.21 tolerated(1) benign(0.001) TCGA-06-5416-01 3 47887189 47887189 G A DHX30 Splice_Site p.X314_splice 0.27 TCGA-06-5416-01 3 47951808 47951808 C T MAP4 Intron 0.54 TCGA-06-5416-01 3 47957441 47957441 C T MAP4 Missense_Mutation p.E626K 0.26 deleterious(0) possibly_damaging(0.844) TCGA-06-5416-01 3 48309438 48309438 C A ZNF589 Missense_Mutation p.S86Y 0.32 tolerated(1) benign(0.228) TCGA-06-5416-01 3 48436121 48436121 G A FBXW12 Silent p.T464T 0.33 TCGA-06-5416-01 3 48450845 48450845 C T PLXNB1 Silent p.P1993P 0.20 TCGA-06-5416-01 3 48453385 48453385 G A PLXNB1 Nonsense_Mutation p.R1712* 0.28 TCGA-06-5416-01 3 48557228 48557228 G T PFKFB4 Silent p.I454I 0.17 TCGA-06-5416-01 3 48557240 48557240 C T PFKFB4 Splice_Site p.X451_splice 0.59 TCGA-06-5416-01 3 48621339 48621339 C T COL7A1 Silent p.G1424G 0.41 TCGA-06-5416-01 3 48631904 48631904 G A COL7A1 Missense_Mutation p.R55C 0.24 unknown(0) TCGA-06-5416-01 3 48641002 48641002 G A UQCRC1 Missense_Mutation p.A234V 0.23 deleterious(0) probably_damaging(0.96) TCGA-06-5416-01 3 48679357 48679357 G A CELSR3 Silent p.G2917G 0.50 TCGA-06-5416-01 3 48679403 48679403 T C CELSR3 Missense_Mutation p.E2902G 0.08 deleterious(0) benign(0.367) TCGA-06-5416-01 3 48682625 48682625 G A CELSR3 Silent p.V2605V 0.30 TCGA-06-5416-01 3 48692769 48692769 C A CELSR3 Missense_Mutation p.W1600C 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 48716847 48716847 G T NCKIPSD Silent p.V511V 0.24 TCGA-06-5416-01 3 48717265 48717265 G T NCKIPSD Missense_Mutation p.S440Y 0.20 deleterious(0.03) benign(0.017) TCGA-06-5416-01 3 49042480 49042480 G A P4HTM Silent p.R358R 0.61 TCGA-06-5416-01 3 49054777 49054777 C A DALRD3 Missense_Mutation p.D271Y 0.28 tolerated(0.37) benign(0.004) TCGA-06-5416-01 3 49059703 49059703 G A NDUFAF3 Intron 0.64 TCGA-06-5416-01 3 49067859 49067859 T G QRICH1 3'UTR 0.28 TCGA-06-5416-01 3 49094490 49094490 G T QRICH1 Missense_Mutation p.N381K 0.21 deleterious(0.02) benign(0.258) TCGA-06-5416-01 3 49135516 49135516 T C QARS Missense_Mutation p.D729G 0.21 deleterious(0.01) probably_damaging(0.986) TCGA-06-5416-01 3 49137075 49137075 G T QARS Missense_Mutation p.S465Y 0.23 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 3 49147958 49147958 G T USP19 Missense_Mutation p.H1258N 0.09 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 49153347 49153347 G A USP19 Missense_Mutation p.P499L 0.27 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 3 49155099 49155099 G A USP19 Missense_Mutation p.R155W 0.20 deleterious_low_confidence(0) benign(0.009) TCGA-06-5416-01 3 49155390 49155390 C A USP19 Missense_Mutation p.Q96H 0.18 tolerated_low_confidence(0.06) benign(0.003) TCGA-06-5416-01 3 49161413 49161413 C T LAMB2 Missense_Mutation p.G1182E 0.36 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 3 49161827 49161827 C T LAMB2 Splice_Site p.X1109_splice 0.06 TCGA-06-5416-01 3 49170393 49170393 G A LAMB2 5'UTR 0.24 TCGA-06-5416-01 3 49200294 49200294 C T CCDC71 Missense_Mutation p.V450M 0.30 deleterious(0.02) unknown(0) TCGA-06-5416-01 3 49227334 49227334 G T C3orf84 Intron 0.56 TCGA-06-5416-01 3 49337952 49337952 C T USP4 Missense_Mutation p.R487Q 0.25 deleterious(0) probably_damaging(0.913) TCGA-06-5416-01 3 49405936 49405936 G A RHOA Missense_Mutation p.R68C 0.36 deleterious(0) benign(0.161) TCGA-06-5416-01 3 49459006 49459006 C T AMT Splice_Site p.X87_splice 0.18 TCGA-06-5416-01 3 49462394 49462394 G A NICN1 Silent p.I196I 0.25 TCGA-06-5416-01 3 49547925 49547925 C A DAG1 5'UTR 0.29 TCGA-06-5416-01 3 49548187 49548187 G A DAG1 Missense_Mutation p.V74I 0.38 tolerated(0.17) benign(0.015) TCGA-06-5416-01 3 49692136 49692136 T C BSN Missense_Mutation p.I1716T 0.28 unknown(0) TCGA-06-5416-01 3 49695089 49695089 C T BSN Silent p.I2700I 0.31 TCGA-06-5416-01 3 49698575 49698575 T G BSN Missense_Mutation p.S3099R 0.32 unknown(0) TCGA-06-5416-01 3 49751595 49751595 C T RNF123 Missense_Mutation p.P1000S 0.37 tolerated(0.5) benign(0.132) TCGA-06-5416-01 3 49756203 49756203 C T AMIGO3 Silent p.Q232Q 0.29 TCGA-06-5416-01 3 49756569 49756569 G T AMIGO3 Silent p.G110G 0.24 TCGA-06-5416-01 3 49845340 49845340 C T UBA7 Silent p.Q848Q 0.25 TCGA-06-5416-01 3 49847847 49847847 C A UBA7 Missense_Mutation p.E494D 0.19 tolerated(0.38) benign(0.159) TCGA-06-5416-01 3 49898395 49898395 C T CAMKV Missense_Mutation p.G207R 0.27 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 3 49899570 49899570 C T CAMKV Silent p.T45T 0.36 TCGA-06-5416-01 3 49940662 49940662 G A MST1R Silent p.P127P 0.15 TCGA-06-5416-01 3 49947702 49947702 C T MON1A Missense_Mutation p.R507H 0.20 deleterious(0) possibly_damaging(0.754) TCGA-06-5416-01 3 50114567 50114567 G T RBM6 3'UTR 0.09 TCGA-06-5416-01 3 50257318 50257318 A G SLC38A3 RNA 0.25 TCGA-06-5416-01 3 50311411 50311411 C T SEMA3B Intron 0.34 TCGA-06-5416-01 3 50326115 50326115 G A IFRD2 Missense_Mutation p.R415C 0.26 deleterious(0) probably_damaging(0.943) TCGA-06-5416-01 3 50333016 50333016 G A HYAL3 Silent p.G6G 0.21 TCGA-06-5416-01 3 50357777 50357777 G A HYAL2 Silent p.G48G 0.56 TCGA-06-5416-01 3 50416407 50416407 G T CACNA2D2 Missense_Mutation p.F426L 0.56 deleterious(0) benign(0.377) TCGA-06-5416-01 3 50471810 50471810 C T CACNA2D2 Silent p.Q113Q 0.24 TCGA-06-5416-01 3 51246284 51246284 G A DOCK3 Missense_Mutation p.A373T 0.26 tolerated(0.45) benign(0.001) TCGA-06-5416-01 3 51251648 51251648 A C DOCK3 Missense_Mutation p.K408Q 0.29 deleterious(0) possibly_damaging(0.827) TCGA-06-5416-01 3 51315127 51315127 C T DOCK3 Missense_Mutation p.S922L 0.53 deleterious(0.05) possibly_damaging(0.83) TCGA-06-5416-01 3 51387718 51387718 G A DOCK3 Splice_Site p.X1335_splice 0.57 TCGA-06-5416-01 3 51413217 51413217 C T DOCK3 Silent p.V1817V 0.50 TCGA-06-5416-01 3 51418725 51418725 C T DOCK3 Missense_Mutation p.A1943V 0.24 tolerated_low_confidence(0.27) benign(0.039) TCGA-06-5416-01 3 51457206 51457206 C A VPRBP Missense_Mutation p.R644M 0.32 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 3 51673532 51673532 C T RAD54L2 Missense_Mutation p.T653I 0.57 tolerated(0.05) benign(0.11) TCGA-06-5416-01 3 51746586 51746586 G A GRM2 Missense_Mutation p.R183H 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 51897231 51897231 C T IQCF2 Missense_Mutation p.R114C 0.06 tolerated(0.11) benign(0.391) TCGA-06-5416-01 3 51929346 51929346 C A IQCF1 Nonsense_Mutation p.E60* 0.60 TCGA-06-5416-01 3 51937069 51937069 T C IQCF1 Missense_Mutation p.K14E 0.28 tolerated_low_confidence(0.84) benign(0) TCGA-06-5416-01 3 51975433 51975433 C A RRP9 Missense_Mutation p.E54D 0.24 tolerated(0.29) probably_damaging(0.97) TCGA-06-5416-01 3 51981863 51981863 C T PARP3 Missense_Mutation p.P469S 0.48 deleterious(0.01) possibly_damaging(0.862) TCGA-06-5416-01 3 51982603 51982603 C T PARP3 3'UTR 0.26 TCGA-06-5416-01 3 51990580 51990580 C T GPR62 Silent p.L304L 0.42 TCGA-06-5416-01 3 52012027 52012027 C T ABHD14A-ACY1 Silent p.V70V 0.22 TCGA-06-5416-01 3 52084879 52084879 C T DUSP7 Silent p.T404T 0.20 TCGA-06-5416-01 3 52181087 52181087 G A POC1A Silent p.I160I 0.22 TCGA-06-5416-01 3 52238737 52238737 C A ALAS1 Missense_Mutation p.F202L 0.24 deleterious(0) possibly_damaging(0.694) TCGA-06-5416-01 3 52257563 52257563 G A TLR9 Missense_Mutation p.R411C 0.61 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 52325879 52325879 C T GLYCTK Missense_Mutation p.R216W 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 52326366 52326366 G T GLYCTK Missense_Mutation p.D266Y 0.23 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 3 52328287 52328287 C T GLYCTK 3'Flank 0.09 TCGA-06-5416-01 3 52360263 52360263 G A DNAH1 Missense_Mutation p.E172K 0.33 benign(0.003) TCGA-06-5416-01 3 52366386 52366386 C T DNAH1 Missense_Mutation p.T421M 0.13 benign(0.028) TCGA-06-5416-01 3 52417943 52417943 G A DNAH1 Missense_Mutation p.D2740N 0.64 possibly_damaging(0.879) TCGA-06-5416-01 3 52441462 52441462 C T BAP1 Silent p.A130A 0.57 TCGA-06-5416-01 3 52443617 52443617 C A BAP1 Missense_Mutation p.K25N 0.23 deleterious(0.03) possibly_damaging(0.487) TCGA-06-5416-01 3 52456792 52456792 C A PHF7 Missense_Mutation p.L272M 0.28 tolerated(0.09) probably_damaging(0.999) TCGA-06-5416-01 3 5246833 5246833 A G EDEM1 Missense_Mutation p.Y375C 0.50 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 52476594 52476594 C T SEMA3G Missense_Mutation p.R107Q 0.48 tolerated(0.5) benign(0.015) TCGA-06-5416-01 3 52485815 52485815 C T TNNC1 Missense_Mutation p.D88N 0.49 tolerated(0.21) benign(0.059) TCGA-06-5416-01 3 52521912 52521912 G A NISCH Missense_Mutation p.E802K 0.51 deleterious(0.03) benign(0.318) TCGA-06-5416-01 3 52525892 52525892 G T NISCH Missense_Mutation p.K1303N 0.28 deleterious(0) probably_damaging(0.95) TCGA-06-5416-01 3 52562216 52562216 G T NT5DC2 Missense_Mutation p.L252I 0.55 deleterious(0.02) benign(0.429) TCGA-06-5416-01 3 52563178 52563178 G A NT5DC2 Silent p.I135I 0.46 TCGA-06-5416-01 3 52731918 52731918 A C GLT8D1 Missense_Mutation p.F50V 0.24 deleterious_low_confidence(0.02) benign(0.184) TCGA-06-5416-01 3 52813491 52813491 G A ITIH1 Missense_Mutation p.V152I 0.29 tolerated(1) benign(0.027) TCGA-06-5416-01 3 52816073 52816073 G A ITIH1 Missense_Mutation p.D269N 0.62 tolerated(0.46) benign(0.009) TCGA-06-5416-01 3 52839841 52839841 G A ITIH3 Missense_Mutation p.A631T 0.25 tolerated(0.53) benign(0.001) TCGA-06-5416-01 3 52851031 52851031 G T ITIH4 Missense_Mutation p.F780L 0.23 deleterious(0.02) possibly_damaging(0.651) TCGA-06-5416-01 3 52859935 52859935 A G ITIH4 Silent p.D242D 0.40 TCGA-06-5416-01 3 52939015 52939015 C T SFMBT1 3'UTR 0.53 TCGA-06-5416-01 3 52960101 52960101 A C SFMBT1 Silent p.A359A 0.24 TCGA-06-5416-01 3 53215522 53215522 G T PRKCD Missense_Mutation p.A147S 0.30 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 53223185 53223185 C T PRKCD Missense_Mutation p.L556F 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 53262367 53262367 G A TKT Silent p.C476C 0.26 TCGA-06-5416-01 3 53376260 53376260 C T DCP1A Missense_Mutation p.R72Q 0.21 deleterious(0) possibly_damaging(0.884) TCGA-06-5416-01 3 53381589 53381589 G A DCP1A 5'UTR 0.24 TCGA-06-5416-01 3 53736832 53736832 G A CACNA1D Missense_Mutation p.R462Q 0.47 tolerated(0.09) possibly_damaging(0.869) TCGA-06-5416-01 3 53756372 53756372 C T CACNA1D Missense_Mutation p.R533C 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 53810669 53810669 G A CACNA1D Missense_Mutation p.D1488N 0.37 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 53899323 53899323 C T IL17RB Silent p.C499C 0.17 TCGA-06-5416-01 3 53905403 53905403 A G ACTR8 Missense_Mutation p.S475P 0.22 tolerated(0.39) benign(0.006) TCGA-06-5416-01 3 55504447 55504447 G A WNT5A Silent p.S272S 0.31 TCGA-06-5416-01 3 56468947 56468947 C T ERC2 Missense_Mutation p.R30Q 0.29 deleterious(0.02) probably_damaging(0.945) TCGA-06-5416-01 3 56627566 56627566 T G CCDC66 Missense_Mutation p.S372R 0.37 deleterious(0.03) possibly_damaging(0.678) TCGA-06-5416-01 3 56628028 56628028 G A CCDC66 Missense_Mutation p.R459K 0.17 tolerated(0.06) benign(0.169) TCGA-06-5416-01 3 56658922 56658922 C T FAM208A Missense_Mutation p.E1418K 0.06 deleterious(0) possibly_damaging(0.767) TCGA-06-5416-01 3 57132279 57132279 G A IL17RD Silent p.C484C 0.32 TCGA-06-5416-01 3 57139916 57139916 T G IL17RD Missense_Mutation p.E239A 0.22 tolerated(0.18) possibly_damaging(0.735) TCGA-06-5416-01 3 57143645 57143645 G A IL17RD Missense_Mutation p.T157M 0.31 deleterious(0.02) possibly_damaging(0.893) TCGA-06-5416-01 3 57294017 57294017 C T APPL1 Missense_Mutation p.S543L 0.26 tolerated(0.1) probably_damaging(1) TCGA-06-5416-01 3 57545578 57545578 T A PDE12 Nonsense_Mutation p.C559* 0.06 TCGA-06-5416-01 3 57557885 57557885 A G ARF4 3'UTR 0.51 TCGA-06-5416-01 3 57561346 57561346 C A ARF4 Missense_Mutation p.D129Y 0.30 deleterious_low_confidence(0) probably_damaging(0.973) TCGA-06-5416-01 3 57614008 57614008 A G DENND6A Missense_Mutation p.I587T 0.27 deleterious(0.01) benign(0.03) TCGA-06-5416-01 3 57817157 57817157 C T SLMAP Silent p.S82S 0.28 TCGA-06-5416-01 3 57857397 57857397 T G SLMAP Silent p.T390T 0.25 TCGA-06-5416-01 3 57898270 57898270 C A SLMAP Missense_Mutation p.S587Y 0.23 deleterious_low_confidence(0.01) benign(0.382) TCGA-06-5416-01 3 58067478 58067478 G A FLNB Silent p.P254P 0.28 TCGA-06-5416-01 3 58116517 58116517 C A FLNB Silent p.V1424V 0.23 TCGA-06-5416-01 3 58179134 58179134 G A DNASE1L3 Missense_Mutation p.S246F 0.26 deleterious(0.01) benign(0.104) TCGA-06-5416-01 3 58196698 58196698 G A DNASE1L3 Intron 0.27 TCGA-06-5416-01 3 58296235 58296235 G T RPP14 Nonsense_Mutation p.E27* 0.26 TCGA-06-5416-01 3 58382896 58382896 G A PXK Missense_Mutation p.R318Q 0.21 deleterious(0) possibly_damaging(0.82) TCGA-06-5416-01 3 58416399 58416399 G A PDHB Missense_Mutation p.R192W 0.50 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 58484492 58484492 G A KCTD6 Missense_Mutation p.G4R 0.21 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-06-5416-01 3 58552270 58552270 C A FAM107A 3'UTR 0.30 TCGA-06-5416-01 3 58619854 58619854 C T FAM3D 3'UTR 0.27 TCGA-06-5416-01 3 62189440 62189440 C T PTPRG Silent p.G657G 0.60 TCGA-06-5416-01 3 62268423 62268423 C T PTPRG Missense_Mutation p.R1312W 0.50 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 62268456 62268456 G T PTPRG Missense_Mutation p.D1323Y 0.23 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 3 62357013 62357013 A T FEZF2 Missense_Mutation p.H333Q 0.46 deleterious(0) possibly_damaging(0.85) TCGA-06-5416-01 3 62358412 62358412 C T FEZF2 Silent p.A44A 0.25 TCGA-06-5416-01 3 62860677 62860677 C A CADPS Nonsense_Mutation p.E10* 0.26 TCGA-06-5416-01 3 63981601 63981601 C T ATXN7 Silent p.G701G 0.31 TCGA-06-5416-01 3 63985126 63985126 C T ATXN7 Missense_Mutation p.S910F 0.14 deleterious_low_confidence(0.01) benign(0.371) TCGA-06-5416-01 3 64085556 64085556 C T PRICKLE2 Missense_Mutation p.R569Q 0.48 tolerated(0.06) possibly_damaging(0.775) TCGA-06-5416-01 3 64132564 64132564 C T PRICKLE2 Silent p.T534T 0.53 TCGA-06-5416-01 3 64532465 64532465 G A ADAMTS9 Missense_Mutation p.S1678L 0.20 tolerated(0.39) benign(0.005) TCGA-06-5416-01 3 64547324 64547324 G A ADAMTS9 Missense_Mutation p.P1543L 0.29 deleterious(0.01) possibly_damaging(0.665) TCGA-06-5416-01 3 64601741 64601741 C A ADAMTS9 Missense_Mutation p.E973D 0.20 tolerated(0.4) possibly_damaging(0.63) TCGA-06-5416-01 3 64617564 64617564 C T ADAMTS9 Missense_Mutation p.R738Q 0.27 deleterious(0.01) possibly_damaging(0.895) TCGA-06-5416-01 3 64672416 64672416 G A ADAMTS9 Missense_Mutation p.A115V 0.61 deleterious(0.03) benign(0.085) TCGA-06-5416-01 3 65415391 65415391 G A MAGI1 Silent p.I657I 0.32 TCGA-06-5416-01 3 66463421 66463421 C A LRIG1 Missense_Mutation p.R222M 0.16 deleterious(0) probably_damaging(0.937) TCGA-06-5416-01 3 67053666 67053666 G A KBTBD8 Missense_Mutation p.R92Q 0.26 tolerated(0.37) possibly_damaging(0.898) TCGA-06-5416-01 3 6903235 6903235 C T GRM7 Silent p.L54L 0.29 TCGA-06-5416-01 3 69112162 69112162 C T UBA3 Missense_Mutation p.E222K 0.29 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 3 69127022 69127022 C T UBA3 Missense_Mutation p.R37H 0.58 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 3 69168078 69168078 C T LMOD3 Silent p.P476P 0.27 TCGA-06-5416-01 3 69168581 69168581 T G LMOD3 Missense_Mutation p.N309H 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 3 69221029 69221029 G A FRMD4B Missense_Mutation p.P1030S 0.25 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 3 69271070 69271070 C T FRMD4B Missense_Mutation p.D224N 0.50 deleterious(0.03) possibly_damaging(0.893) TCGA-06-5416-01 3 70005639 70005639 G A MITF Missense_Mutation p.R324H 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 3 70014280 70014280 G A MITF Missense_Mutation p.D482N 0.44 tolerated(0.14) benign(0.08) TCGA-06-5416-01 3 72428491 72428491 C A RYBP Missense_Mutation p.E171D 0.07 tolerated(0.09) benign(0.329) TCGA-06-5416-01 3 72873620 72873620 C T SHQ1 Missense_Mutation p.A228T 0.37 tolerated(0.16) benign(0.009) TCGA-06-5416-01 3 72971379 72971379 A G GXYLT2 Missense_Mutation p.T165A 0.49 tolerated(0.74) benign(0.025) TCGA-06-5416-01 3 73111358 73111358 G A EBLN2 Silent p.R42R 0.41 TCGA-06-5416-01 3 73114782 73114782 C T PPP4R2 Missense_Mutation p.S388F 0.21 deleterious(0.01) possibly_damaging(0.665) TCGA-06-5416-01 3 73432796 73432796 C T PDZRN3 Missense_Mutation p.S974N 0.46 deleterious(0.04) possibly_damaging(0.742) TCGA-06-5416-01 3 73433283 73433283 T C PDZRN3 Missense_Mutation p.T812A 0.37 tolerated(0.53) benign(0.003) TCGA-06-5416-01 3 74350823 74350823 G A CNTN3 Silent p.S640S 0.14 TCGA-06-5416-01 3 77595548 77595548 A G ROBO2 Missense_Mutation p.T348A 0.23 tolerated(0.11) possibly_damaging(0.523) TCGA-06-5416-01 3 77607147 77607147 G A ROBO2 Silent p.T444T 0.26 TCGA-06-5416-01 3 78766928 78766928 C T ROBO1 Missense_Mutation p.E255K 0.50 deleterious(0.03) probably_damaging(0.987) TCGA-06-5416-01 3 86116033 86116033 A G CADM2 3'Flank 0.42 TCGA-06-5416-01 3 8775561 8775561 C T CAV3 5'UTR 0.21 TCGA-06-5416-01 3 88039999 88039999 G A HTR1F Missense_Mutation p.A34T 0.21 tolerated(1) benign(0.078) TCGA-06-5416-01 3 88189357 88189357 T C ZNF654 Silent p.C299C 0.42 TCGA-06-5416-01 3 88189604 88189604 G A ZNF654 Missense_Mutation p.E382K 0.11 tolerated(0.06) benign(0.05) TCGA-06-5416-01 3 88199275 88199275 G A C3orf38 Missense_Mutation p.E25K 0.24 deleterious(0.01) benign(0.231) TCGA-06-5416-01 3 88205350 88205350 A G C3orf38 Silent p.S185S 0.04 TCGA-06-5416-01 3 88205667 88205667 T C C3orf38 Missense_Mutation p.V291A 0.50 deleterious(0) benign(0.157) TCGA-06-5416-01 3 89259287 89259287 A G EPHA3 Missense_Mutation p.D144G 0.40 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 3 9032472 9032472 G A SRGAP3 Silent p.G870G 0.38 TCGA-06-5416-01 3 9166429 9166429 G A SRGAP3 Silent p.S80S 0.24 TCGA-06-5416-01 3 9406957 9406957 G T THUMPD3 Missense_Mutation p.D69Y 0.32 deleterious(0) possibly_damaging(0.832) TCGA-06-5416-01 3 9512615 9512615 T G SETD5 Splice_Site p.X1065_splice 0.25 TCGA-06-5416-01 3 96962872 96962872 T C EPHA6 Silent p.S449S 0.41 TCGA-06-5416-01 3 97251380 97251380 C T EPHA6 Silent p.V793V 0.48 TCGA-06-5416-01 3 9726911 9726911 C T MTMR14 Missense_Mutation p.R382W 0.06 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 3 97503800 97503800 G T ARL6 Nonsense_Mutation p.E86* 0.40 TCGA-06-5416-01 3 97608206 97608206 T C CRYBG3 Missense_Mutation p.L523P 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 3 97611821 97611821 C T CRYBG3 Missense_Mutation p.R572C 0.16 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 3 97806708 97806708 A C OR5AC2 Missense_Mutation p.K231T 0.34 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 3 97852008 97852008 C T OR5H1 Missense_Mutation p.A156V 0.23 tolerated(0.05) benign(0.139) TCGA-06-5416-01 3 9785345 9785345 C T BRPF1 Silent p.L799L 0.64 TCGA-06-5416-01 3 97868823 97868823 G T OR5H14 Missense_Mutation p.M198I 0.48 tolerated(0.28) benign(0.009) TCGA-06-5416-01 3 97888118 97888118 C A OR5H15 Missense_Mutation p.S192Y 0.19 deleterious(0) possibly_damaging(0.722) TCGA-06-5416-01 3 9793482 9793482 C T OGG1 Silent p.I138I 0.48 TCGA-06-5416-01 3 98002175 98002175 G A OR5H2 Silent p.R148R 0.24 TCGA-06-5416-01 3 98002457 98002457 C A OR5H2 Silent p.A242A 0.27 TCGA-06-5416-01 3 98002676 98002676 G A OR5H2 Silent p.%3D 0.18 TCGA-06-5416-01 3 9803436 9803436 C A CAMK1 Missense_Mutation p.E145D 0.27 deleterious(0.01) benign(0.445) TCGA-06-5416-01 3 98109904 98109904 A G OR5K3 Missense_Mutation p.Y132C 0.45 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 3 98216888 98216888 C T OR5K2 Missense_Mutation p.R122C 0.17 deleterious(0.01) benign(0.181) TCGA-06-5416-01 3 98217355 98217355 A G OR5K2 Silent p.L277L 0.24 TCGA-06-5416-01 3 98251923 98251923 A G GPR15 Missense_Mutation p.D349G 0.42 tolerated(0.16) benign(0.008) TCGA-06-5416-01 3 98304310 98304310 G A CPOX Silent p.L383L 0.40 TCGA-06-5416-01 3 9833148 9833148 C A TADA3 Translation_Start_Site p.M1? 0.08 deleterious_low_confidence(0) probably_damaging(0.914) TCGA-06-5416-01 3 98510792 98510792 T C ST3GAL6 Silent p.S288S 0.16 TCGA-06-5416-01 3 9877124 9877124 G T TTLL3 Missense_Mutation p.R900I 0.47 deleterious_low_confidence(0.02) benign(0.144) TCGA-06-5416-01 3 9944726 9944726 G A IL17RE Missense_Mutation p.R37H 0.07 tolerated_low_confidence(0.78) benign(0.001) TCGA-06-5416-01 3 99513582 99513582 C T COL8A1 Silent p.F279F 0.45 TCGA-06-5416-01 3 99568481 99568481 A G FILIP1L Missense_Mutation p.V680A 0.49 tolerated(0.27) benign(0.005) TCGA-06-5416-01 3 99569463 99569463 C A FILIP1L Missense_Mutation p.D353Y 0.44 deleterious(0) probably_damaging(0.928) TCGA-06-5416-01 3 9991713 9991713 G T PRRT3 Silent p.G29G 0.35 TCGA-06-5416-01 4 100125343 100125343 T C ADH6 3'UTR 0.38 TCGA-06-5416-01 4 100125519 100125519 A C ADH6 Intron 0.19 TCGA-06-5416-01 4 100128614 100128614 G T ADH6 Missense_Mutation p.S318Y 0.22 deleterious(0) possibly_damaging(0.735) TCGA-06-5416-01 4 100203666 100203666 G A ADH1A Missense_Mutation p.A222V 0.10 deleterious(0.03) possibly_damaging(0.876) TCGA-06-5416-01 4 100237181 100237181 G T ADH1B Missense_Mutation p.F147L 0.31 deleterious(0) possibly_damaging(0.693) TCGA-06-5416-01 4 100239982 100239982 A C ADH1B Missense_Mutation p.V27G 0.33 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 4 100458869 100458869 C T C4orf17 Missense_Mutation p.A197V 0.44 deleterious(0.03) possibly_damaging(0.527) TCGA-06-5416-01 4 100542334 100542334 C A MTTP Missense_Mutation p.S820Y 0.23 deleterious(0) benign(0.091) TCGA-06-5416-01 4 10084773 10084773 C T WDR1 Missense_Mutation p.D357N 0.69 tolerated(0.09) benign(0.056) TCGA-06-5416-01 4 100870876 100870876 C T H2AFZ Missense_Mutation p.D9N 0.23 deleterious(0.03) unknown(0) TCGA-06-5416-01 4 10090338 10090338 G A WDR1 Nonsense_Mutation p.R196* 0.18 TCGA-06-5416-01 4 101109220 101109220 A G DDIT4L Missense_Mutation p.S66P 0.22 deleterious(0.04) probably_damaging(0.95) TCGA-06-5416-01 4 103498052 103498052 C A NFKB1 Missense_Mutation p.L143I 0.06 deleterious(0.02) possibly_damaging(0.908) TCGA-06-5416-01 4 103571739 103571739 G T MANBA Missense_Mutation p.S608R 0.31 tolerated(0.1) benign(0.053) TCGA-06-5416-01 4 103870420 103870420 G T SLC9B1 Missense_Mutation p.L126I 0.15 deleterious(0.02) probably_damaging(0.951) TCGA-06-5416-01 4 103987543 103987543 C A SLC9B2 Missense_Mutation p.R71I 0.30 deleterious(0.01) benign(0.288) TCGA-06-5416-01 4 104003301 104003301 C T BDH2 Silent p.K207K 0.23 TCGA-06-5416-01 4 104065639 104065639 G A CENPE Missense_Mutation p.T1665M 0.17 benign(0.001) TCGA-06-5416-01 4 104080245 104080245 C T CENPE Silent p.E841E 0.11 TCGA-06-5416-01 4 10446011 10446011 C T ZNF518B Missense_Mutation p.E648K 0.25 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 4 10447172 10447172 A G ZNF518B Missense_Mutation p.S261P 0.25 deleterious(0.03) possibly_damaging(0.621) TCGA-06-5416-01 4 10447441 10447441 G A ZNF518B Missense_Mutation p.S171L 0.32 deleterious(0.04) benign(0.051) TCGA-06-5416-01 4 10533890 10533890 T C CLNK Missense_Mutation p.D207G 0.10 deleterious(0.04) possibly_damaging(0.521) TCGA-06-5416-01 4 10566361 10566361 C T CLNK Silent p.P111P 0.26 TCGA-06-5416-01 4 10567774 10567774 C T CLNK Missense_Mutation p.E51K 0.26 deleterious(0.05) benign(0.227) TCGA-06-5416-01 4 106155429 106155429 G A TET2 Silent p.K110K 0.27 TCGA-06-5416-01 4 106156441 106156441 G A TET2 Missense_Mutation p.E448K 0.16 deleterious(0) benign(0.08) TCGA-06-5416-01 4 106473912 106473912 C A ARHGEF38 5'UTR 0.10 TCGA-06-5416-01 4 106603985 106603985 G T INTS12 Missense_Mutation p.L432I 0.23 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-06-5416-01 4 106604308 106604308 G A INTS12 Missense_Mutation p.S324L 0.51 tolerated(0.11) benign(0.007) TCGA-06-5416-01 4 107092301 107092301 G A TBCK Missense_Mutation p.S729L 0.50 tolerated(0.29) benign(0.001) TCGA-06-5416-01 4 107133977 107133977 A C TBCK Missense_Mutation p.F597C 0.50 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 107165814 107165814 G A TBCK Nonsense_Mutation p.R347* 0.24 TCGA-06-5416-01 4 107845197 107845197 C T DKK2 Missense_Mutation p.D232N 0.57 tolerated(0.22) possibly_damaging(0.886) TCGA-06-5416-01 4 107845793 107845793 C A DKK2 Silent p.R146R 0.20 TCGA-06-5416-01 4 1079727 1079727 C A RNF212 Nonsense_Mutation p.E107* 0.24 TCGA-06-5416-01 4 108535506 108535506 G A PAPSS1 Missense_Mutation p.R592C 0.07 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 108820798 108820798 T C SGMS2 Missense_Mutation p.Y175H 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 108831540 108831540 C T SGMS2 Missense_Mutation p.S310F 0.07 deleterious(0) possibly_damaging(0.51) TCGA-06-5416-01 4 108911013 108911013 T C HADH 5'UTR 0.54 TCGA-06-5416-01 4 109773404 109773404 T C COL25A1 Silent p.L459L 0.37 TCGA-06-5416-01 4 109774059 109774059 G A COL25A1 Missense_Mutation p.T448M 0.28 tolerated(0.36) probably_damaging(0.996) TCGA-06-5416-01 4 110451596 110451596 C A SEC24B Silent p.L1076L 0.21 TCGA-06-5416-01 4 110608778 110608778 C T CCDC109B 3'UTR 0.07 TCGA-06-5416-01 4 110635634 110635634 C A PLA2G12A Nonsense_Mutation p.E157* 0.27 TCGA-06-5416-01 4 110638745 110638745 C T PLA2G12A Missense_Mutation p.R137Q 0.12 tolerated(0.23) benign(0.082) TCGA-06-5416-01 4 110650834 110650834 C A PLA2G12A Missense_Mutation p.K44N 0.49 tolerated(0.36) benign(0.019) TCGA-06-5416-01 4 110667641 110667641 C T CFI Missense_Mutation p.R389H 0.19 tolerated(0.58) benign(0.013) TCGA-06-5416-01 4 110667659 110667659 C A CFI Splice_Site p.X383_splice 0.31 TCGA-06-5416-01 4 110737346 110737346 G A GAR1 Missense_Mutation p.G9E 0.51 deleterious_low_confidence(0.01) unknown(0) TCGA-06-5416-01 4 110763791 110763791 T C RRH Missense_Mutation p.V296A 0.27 tolerated(0.4) benign(0.003) TCGA-06-5416-01 4 110791223 110791223 C T LRIT3 Nonsense_Mutation p.R440* 0.12 TCGA-06-5416-01 4 110901229 110901229 G T EGF Missense_Mutation p.V719L 0.24 deleterious(0.04) benign(0.26) TCGA-06-5416-01 4 111397877 111397877 G A ENPEP Missense_Mutation p.D103N 0.37 tolerated(0.11) benign(0.19) TCGA-06-5416-01 4 111452397 111452397 A G ENPEP Missense_Mutation p.T591A 0.32 tolerated(0.49) benign(0.004) TCGA-06-5416-01 4 111542300 111542300 G T PITX2 Intron 0.41 TCGA-06-5416-01 4 113352015 113352015 G A ALPK1 Missense_Mutation p.E438K 0.39 tolerated(1) benign(0) TCGA-06-5416-01 4 113352513 113352513 G A ALPK1 Missense_Mutation p.D604N 0.22 tolerated(0.26) benign(0.004) TCGA-06-5416-01 4 113352758 113352758 C A ALPK1 Silent p.A685A 0.37 TCGA-06-5416-01 4 113353341 113353341 C T ALPK1 Missense_Mutation p.P880S 0.49 tolerated(0.18) benign(0.001) TCGA-06-5416-01 4 113362171 113362171 G T ALPK1 Nonsense_Mutation p.G1213* 0.22 TCGA-06-5416-01 4 113435863 113435863 C T NEUROG2 Missense_Mutation p.D257N 0.46 deleterious_low_confidence(0) benign(0.184) TCGA-06-5416-01 4 113436134 113436134 C A NEUROG2 Missense_Mutation p.E166D 0.26 tolerated(0.06) probably_damaging(0.935) TCGA-06-5416-01 4 113462268 113462268 T C C4orf21 Missense_Mutation p.N1919D 0.50 deleterious(0.01) possibly_damaging(0.755) TCGA-06-5416-01 4 113505291 113505291 G A C4orf21 Nonsense_Mutation p.R1381* 0.55 TCGA-06-5416-01 4 11400871 11400871 G A HS3ST1 Silent p.G253G 0.35 TCGA-06-5416-01 4 114120195 114120195 C A ANK2 Missense_Mutation p.S105Y 0.10 probably_damaging(0.993) TCGA-06-5416-01 4 114274297 114274297 C A ANK2 Missense_Mutation p.S1508Y 0.23 probably_damaging(0.993) TCGA-06-5416-01 4 114275380 114275380 C T ANK2 Missense_Mutation p.A1869V 0.42 benign(0) TCGA-06-5416-01 4 114275979 114275979 C T ANK2 Missense_Mutation p.R2069C 0.20 probably_damaging(0.944) TCGA-06-5416-01 4 114276521 114276521 C A ANK2 Missense_Mutation p.F2249L 0.13 benign(0.065) TCGA-06-5416-01 4 114452428 114452428 G A CAMK2D Missense_Mutation p.S182F 0.41 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 4 114824474 114824474 G A ARSJ Silent p.S252S 0.11 TCGA-06-5416-01 4 114824543 114824543 G T ARSJ Silent p.A229A 0.45 TCGA-06-5416-01 4 115544223 115544223 G A UGT8 Missense_Mutation p.A63T 0.49 tolerated(0.38) benign(0.003) TCGA-06-5416-01 4 115760613 115760613 G T NDST4 Missense_Mutation p.T736N 0.24 tolerated(0.51) benign(0.097) TCGA-06-5416-01 4 115767022 115767022 G A NDST4 Missense_Mutation p.T691I 0.26 tolerated(0.08) probably_damaging(0.923) TCGA-06-5416-01 4 115767081 115767081 G T NDST4 Missense_Mutation p.F671L 0.11 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 4 1161414 1161414 G A SPON2 Missense_Mutation p.S281F 0.30 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 4 1165835 1165835 C T SPON2 Missense_Mutation p.A9T 0.46 tolerated_low_confidence(0.42) unknown(0) TCGA-06-5416-01 4 118005438 118005438 G T TRAM1L1 3'UTR 0.33 TCGA-06-5416-01 4 118005452 118005452 C A TRAM1L1 Missense_Mutation p.E366D 0.11 tolerated(0.46) benign(0.144) TCGA-06-5416-01 4 118975040 118975040 G A NDST3 5'UTR 0.14 TCGA-06-5416-01 4 119273916 119273916 C A PRSS12 5'UTR 0.41 TCGA-06-5416-01 4 119461521 119461521 C T CEP170P1 RNA 0.52 TCGA-06-5416-01 4 119631200 119631200 G T METTL14 Nonsense_Mutation p.E372* 0.14 TCGA-06-5416-01 4 119653893 119653893 G A SEC24D Missense_Mutation p.P891S 0.10 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 4 119951522 119951522 G T SYNPO2 Missense_Mutation p.R531I 0.34 deleterious(0.02) possibly_damaging(0.789) TCGA-06-5416-01 4 119952319 119952319 C T SYNPO2 Missense_Mutation p.P797S 0.12 tolerated(0.35) benign(0.023) TCGA-06-5416-01 4 119952594 119952594 C T SYNPO2 Silent p.V888V 0.20 TCGA-06-5416-01 4 120166572 120166572 T C USP53 Silent p.F75F 0.10 TCGA-06-5416-01 4 120463721 120463721 C T PDE5A Missense_Mutation p.E489K 0.12 deleterious(0.03) possibly_damaging(0.895) TCGA-06-5416-01 4 120528376 120528376 C T PDE5A Missense_Mutation p.E77K 0.23 tolerated(0.44) benign(0.085) TCGA-06-5416-01 4 121616360 121616360 G A PRDM5 Missense_Mutation p.P600L 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 121732602 121732602 C T PRDM5 Missense_Mutation p.D290N 0.44 tolerated(0.57) benign(0.001) TCGA-06-5416-01 4 121957538 121957538 C A NDNF Nonsense_Mutation p.E530* 0.25 TCGA-06-5416-01 4 121958704 121958704 G A NDNF Missense_Mutation p.S141F 0.24 deleterious(0.04) benign(0.389) TCGA-06-5416-01 4 1222011 1222011 C T CTBP1 Missense_Mutation p.D106N 0.26 deleterious(0.01) benign(0.401) TCGA-06-5416-01 4 122261627 122261627 C T QRFPR Missense_Mutation p.R160Q 0.37 tolerated(0.39) benign(0.013) TCGA-06-5416-01 4 122605887 122605887 C T ANXA5 Missense_Mutation p.R45Q 0.20 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 4 122766806 122766806 C A BBS7 Missense_Mutation p.E361D 0.20 tolerated(0.19) benign(0.006) TCGA-06-5416-01 4 123094278 123094278 G T KIAA1109 Missense_Mutation p.R62I 0.22 possibly_damaging(0.854) TCGA-06-5416-01 4 123156157 123156157 G T KIAA1109 Nonsense_Mutation p.E1185* 0.32 TCGA-06-5416-01 4 123161240 123161240 C T KIAA1109 Missense_Mutation p.A1468V 0.29 probably_damaging(0.997) TCGA-06-5416-01 4 123192547 123192547 G A KIAA1109 Missense_Mutation p.R2623H 0.25 probably_damaging(0.996) TCGA-06-5416-01 4 123207926 123207926 C T KIAA1109 Missense_Mutation p.R3090C 0.21 probably_damaging(0.994) TCGA-06-5416-01 4 123237903 123237903 G A KIAA1109 Missense_Mutation p.R3519Q 0.22 probably_damaging(0.992) TCGA-06-5416-01 4 123239396 123239396 C T KIAA1109 Missense_Mutation p.R3589C 0.16 probably_damaging(0.994) TCGA-06-5416-01 4 123280837 123280837 G T KIAA1109 Missense_Mutation p.D4921Y 0.17 possibly_damaging(0.603) TCGA-06-5416-01 4 123305041 123305041 C A ADAD1 Missense_Mutation p.S150Y 0.26 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 4 123317445 123317445 G A ADAD1 Missense_Mutation p.V213I 0.42 tolerated(0.24) benign(0.013) TCGA-06-5416-01 4 123350847 123350847 G T ADAD1 Nonsense_Mutation p.G562* 0.51 TCGA-06-5416-01 4 123377450 123377450 T C IL2 Missense_Mutation p.N49S 0.32 tolerated(0.41) benign(0.001) TCGA-06-5416-01 4 123542138 123542138 C A IL21 Missense_Mutation p.R10M 0.46 deleterious(0) probably_damaging(0.926) TCGA-06-5416-01 4 123664403 123664403 A G BBS12 Silent p.V452V 0.48 TCGA-06-5416-01 4 123797539 123797539 G T FGF2 Missense_Mutation p.R214L 0.52 tolerated(0.44) possibly_damaging(0.602) TCGA-06-5416-01 4 123838746 123838746 C T NUDT6 Missense_Mutation p.A118T 0.22 tolerated(0.07) benign(0.013) TCGA-06-5416-01 4 123855393 123855393 G T SPATA5 Missense_Mutation p.R216I 0.18 tolerated(0.14) benign(0.017) TCGA-06-5416-01 4 123859326 123859326 G A SPATA5 Silent p.P460P 0.53 TCGA-06-5416-01 4 123868430 123868430 C T SPATA5 Missense_Mutation p.R501C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 124235156 124235156 T G SPATA5 Missense_Mutation p.I873M 0.43 deleterious(0.01) possibly_damaging(0.594) TCGA-06-5416-01 4 124323370 124323370 C T SPRY1 Silent p.C208C 0.25 TCGA-06-5416-01 4 125590784 125590784 T C ANKRD50 Silent p.E1216E 0.26 TCGA-06-5416-01 4 125592365 125592365 A T ANKRD50 Missense_Mutation p.H689Q 0.06 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 126238035 126238035 G T FAT4 Missense_Mutation p.D157Y 0.36 probably_damaging(1) TCGA-06-5416-01 4 126240004 126240004 G A FAT4 Missense_Mutation p.G813D 0.21 probably_damaging(1) TCGA-06-5416-01 4 126241347 126241347 G T FAT4 Missense_Mutation p.D1261Y 0.15 probably_damaging(1) TCGA-06-5416-01 4 126372873 126372873 A G FAT4 Missense_Mutation p.T3568A 0.43 probably_damaging(0.999) TCGA-06-5416-01 4 126372885 126372885 A T FAT4 Missense_Mutation p.I3572F 0.11 probably_damaging(0.992) TCGA-06-5416-01 4 126389726 126389726 G A FAT4 Missense_Mutation p.E3987K 0.13 benign(0) TCGA-06-5416-01 4 128732728 128732728 C T HSPA4L Silent p.G505G 0.56 TCGA-06-5416-01 4 128807833 128807833 G T PLK4 Missense_Mutation p.K436N 0.21 tolerated(0.16) benign(0.071) TCGA-06-5416-01 4 128859986 128859986 G A MFSD8 Missense_Mutation p.R236C 0.52 deleterious(0.02) benign(0.052) TCGA-06-5416-01 4 129028530 129028530 C T LARP1B Intron 0.48 TCGA-06-5416-01 4 129128456 129128456 C A LARP1B Missense_Mutation p.S822Y 0.10 tolerated(0.21) benign(0.403) TCGA-06-5416-01 4 129131028 129131028 A C LARP1B Missense_Mutation p.E855D 0.11 tolerated(0.13) benign(0.033) TCGA-06-5416-01 4 130003468 130003468 G A SCLT1 Missense_Mutation p.S32F 0.38 tolerated(0.05) benign(0.248) TCGA-06-5416-01 4 130030721 130030721 A G C4orf33 Missense_Mutation p.T130A 0.33 tolerated(0.09) benign(0.228) TCGA-06-5416-01 4 130032967 130032967 G A C4orf33 3'UTR 0.26 TCGA-06-5416-01 4 1321463 1321463 C T MAEA Missense_Mutation p.R210W 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 4 1332333 1332333 G A MAEA Silent p.K341K 0.61 TCGA-06-5416-01 4 13383175 13383175 T C RAB28 Silent p.L145L 0.24 TCGA-06-5416-01 4 134084140 134084140 C A PCDH10 Missense_Mutation p.L936I 0.27 tolerated(0.06) possibly_damaging(0.755) TCGA-06-5416-01 4 1374713 1374713 C T UVSSA Missense_Mutation p.P600S 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 4 138442573 138442573 C T PCDH18 Silent p.S1006S 0.25 TCGA-06-5416-01 4 139140512 139140512 C T SLC7A11 Silent p.T218T 0.25 TCGA-06-5416-01 4 139966631 139966631 A G CCRN4L 3'UTR 0.30 TCGA-06-5416-01 4 139981697 139981697 C T ELF2 Missense_Mutation p.G301E 0.29 tolerated(0.95) benign(0.038) TCGA-06-5416-01 4 139983058 139983058 T G ELF2 Missense_Mutation p.K244T 0.56 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 139983136 139983136 C T ELF2 Nonsense_Mutation p.W218* 0.26 TCGA-06-5416-01 4 140309133 140309133 C A NAA15 Missense_Mutation p.F832L 0.09 tolerated(0.12) benign(0.005) TCGA-06-5416-01 4 141264748 141264748 C A RP11-425I13.3 Intron 0.31 TCGA-06-5416-01 4 141300274 141300274 G T SCOC Splice_Site p.X61_splice 0.22 TCGA-06-5416-01 4 141456900 141456900 C T ELMOD2 Missense_Mutation p.A62V 0.46 tolerated(0.29) possibly_damaging(0.711) TCGA-06-5416-01 4 141484324 141484324 T C UCP1 Missense_Mutation p.T190A 0.19 tolerated(1) possibly_damaging(0.771) TCGA-06-5416-01 4 141543299 141543299 A C TBC1D9 3'UTR 0.26 TCGA-06-5416-01 4 141543593 141543593 T C TBC1D9 Missense_Mutation p.D1186G 0.19 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-06-5416-01 4 141622708 141622708 C T TBC1D9 Missense_Mutation p.R64Q 0.38 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 4 141888806 141888806 G A RNF150 Nonsense_Mutation p.R236* 0.13 TCGA-06-5416-01 4 142153763 142153763 G T ZNF330 Nonsense_Mutation p.E219* 0.12 TCGA-06-5416-01 4 142154985 142154985 G A ZNF330 Missense_Mutation p.D269N 0.37 tolerated_low_confidence(0.37) benign(0.084) TCGA-06-5416-01 4 143029280 143029280 A C INPP4B Nonsense_Mutation p.Y780* 0.11 TCGA-06-5416-01 4 143129600 143129600 C A INPP4B Missense_Mutation p.Q350H 0.19 tolerated(0.31) benign(0.001) TCGA-06-5416-01 4 143129642 143129642 T G INPP4B Silent p.T336T 0.14 TCGA-06-5416-01 4 143129652 143129652 C A INPP4B Missense_Mutation p.G333V 0.19 deleterious(0.01) possibly_damaging(0.71) TCGA-06-5416-01 4 144378847 144378847 A C GAB1 Missense_Mutation p.I534L 0.22 tolerated(0.48) benign(0.07) TCGA-06-5416-01 4 144457664 144457664 A C SMARCA5 Missense_Mutation p.K443T 0.26 deleterious(0) possibly_damaging(0.875) TCGA-06-5416-01 4 144468613 144468613 G T SMARCA5 Missense_Mutation p.R910I 0.18 deleterious(0) benign(0.054) TCGA-06-5416-01 4 145580088 145580088 G T HHIP Nonsense_Mutation p.E207* 0.26 TCGA-06-5416-01 4 145629429 145629429 G A HHIP Missense_Mutation p.E423K 0.17 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 4 145635391 145635391 C T HHIP Missense_Mutation p.L480F 0.25 deleterious(0) benign(0.43) TCGA-06-5416-01 4 145635493 145635493 C T HHIP Missense_Mutation p.R514C 0.33 deleterious(0.01) benign(0.402) TCGA-06-5416-01 4 145916618 145916618 T G ANAPC10 Missense_Mutation p.Q155H 0.46 deleterious(0.03) benign(0.391) TCGA-06-5416-01 4 146002881 146002881 C T ANAPC10 Missense_Mutation p.R46Q 0.23 deleterious(0.04) benign(0.36) TCGA-06-5416-01 4 146041300 146041300 A T ABCE1 Missense_Mutation p.E380V 0.36 deleterious(0) probably_damaging(0.963) TCGA-06-5416-01 4 146059195 146059195 T G OTUD4 Missense_Mutation p.E846A 0.23 tolerated(0.39) benign(0.167) TCGA-06-5416-01 4 146080762 146080762 C A OTUD4 Missense_Mutation p.E109D 0.23 deleterious(0.01) possibly_damaging(0.493) TCGA-06-5416-01 4 146436137 146436137 C A SMAD1 Silent p.P124P 0.18 TCGA-06-5416-01 4 147824882 147824882 C A TTC29 Splice_Site p.X134_splice 0.26 TCGA-06-5416-01 4 147861012 147861012 C T TTC29 Silent p.P12P 0.11 TCGA-06-5416-01 4 148453726 148453726 T C EDNRA Missense_Mutation p.I206T 0.22 deleterious(0.01) probably_damaging(0.978) TCGA-06-5416-01 4 148457031 148457031 C T EDNRA Silent p.F250F 0.19 TCGA-06-5416-01 4 148575222 148575222 G T PRMT10 Missense_Mutation p.S609Y 0.10 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 4 148796182 148796182 G A ARHGAP10 Missense_Mutation p.R238Q 0.19 deleterious(0.02) probably_damaging(0.992) TCGA-06-5416-01 4 149357378 149357378 G T NR3C2 Missense_Mutation p.S212Y 0.24 deleterious_low_confidence(0.02) benign(0.009) TCGA-06-5416-01 4 149357536 149357536 C T NR3C2 Silent p.T159T 0.19 TCGA-06-5416-01 4 15009198 15009198 C A CPEB2 Silent p.L644L 0.21 TCGA-06-5416-01 4 151153523 151153523 G A DCLK2 Missense_Mutation p.R462H 0.16 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 4 151604754 151604754 A C LRBA Missense_Mutation p.I1957S 0.28 deleterious(0.03) possibly_damaging(0.861) TCGA-06-5416-01 4 151719275 151719275 C T LRBA Silent p.S1846S 0.09 TCGA-06-5416-01 4 151773142 151773142 C T LRBA Silent p.K1240K 0.23 TCGA-06-5416-01 4 151814266 151814266 A G LRBA Silent p.V701V 0.25 TCGA-06-5416-01 4 151827078 151827078 C T LRBA Missense_Mutation p.S556N 0.20 tolerated(0.24) probably_damaging(0.985) TCGA-06-5416-01 4 152043089 152043089 C T SH3D19 3'UTR 0.28 TCGA-06-5416-01 4 152043353 152043353 C A SH3D19 Missense_Mutation p.D755Y 0.42 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 4 152060950 152060950 A G SH3D19 Missense_Mutation p.V501A 0.30 tolerated(0.09) benign(0.098) TCGA-06-5416-01 4 152095906 152095906 C T SH3D19 Missense_Mutation p.D204N 0.36 tolerated(0.07) probably_damaging(1) TCGA-06-5416-01 4 152095984 152095984 C A SH3D19 Missense_Mutation p.A178S 0.22 tolerated(0.13) possibly_damaging(0.493) TCGA-06-5416-01 4 152096291 152096291 T C SH3D19 Silent p.R75R 0.22 TCGA-06-5416-01 4 153243952 153243952 C A FBXW7 3'UTR 0.18 TCGA-06-5416-01 4 153243996 153243996 C T FBXW7 3'UTR 0.21 TCGA-06-5416-01 4 153247323 153247323 A G FBXW7 Silent p.C493C 0.17 TCGA-06-5416-01 4 153564245 153564245 C A TMEM154 Missense_Mutation p.R158I 0.33 deleterious(0) possibly_damaging(0.883) TCGA-06-5416-01 4 153690734 153690734 C T TIGD4 Missense_Mutation p.A475T 0.38 deleterious(0.04) possibly_damaging(0.504) TCGA-06-5416-01 4 153691648 153691648 T C TIGD4 Missense_Mutation p.Y170C 0.36 deleterious(0.04) probably_damaging(0.974) TCGA-06-5416-01 4 153692256 153692256 A G TIGD4 5'UTR 0.46 TCGA-06-5416-01 4 153864620 153864620 C A FHDC1 Silent p.L137L 0.37 TCGA-06-5416-01 4 153881906 153881906 C T FHDC1 Missense_Mutation p.R254W 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 153884215 153884215 C T FHDC1 Missense_Mutation p.S321F 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 153897594 153897594 C A FHDC1 Missense_Mutation p.L1051I 0.40 tolerated(0.41) benign(0.074) TCGA-06-5416-01 4 154335914 154335914 G A MND1 Missense_Mutation p.A175T 0.51 tolerated(0.23) benign(0.291) TCGA-06-5416-01 4 154502685 154502685 G A KIAA0922 Missense_Mutation p.V289I 0.22 tolerated(0.1) probably_damaging(0.999) TCGA-06-5416-01 4 154524525 154524525 A G KIAA0922 Missense_Mutation p.T904A 0.38 tolerated(0.26) benign(0.018) TCGA-06-5416-01 4 154542011 154542011 G T KIAA0922 Missense_Mutation p.R1224M 0.13 tolerated(0.13) probably_damaging(0.959) TCGA-06-5416-01 4 154624375 154624375 G A TLR2 Missense_Mutation p.D106N 0.49 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 155143 155143 G T ZNF718 RNA 0.37 TCGA-06-5416-01 4 155157297 155157297 G A DCHS2 Missense_Mutation p.A2381V 0.21 deleterious(0.03) benign(0.259) TCGA-06-5416-01 4 15516372 15516372 C A CC2D2A Missense_Mutation p.L254I 0.31 tolerated(0.2) probably_damaging(0.99) TCGA-06-5416-01 4 155180702 155180702 T C DCHS2 Missense_Mutation p.I1807V 0.09 tolerated(0.22) benign(0.1) TCGA-06-5416-01 4 155180873 155180873 A T DCHS2 Missense_Mutation p.F1750I 0.17 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 4 155278475 155278475 T C DCHS2 Silent p.G232G 0.21 TCGA-06-5416-01 4 155461763 155461763 G A PLRG1 Nonsense_Mutation p.R308* 0.22 TCGA-06-5416-01 4 155505717 155505717 C T FGA Silent p.R720R 0.47 TCGA-06-5416-01 4 155505789 155505789 G A FGA Silent p.F696F 0.23 TCGA-06-5416-01 4 155506629 155506629 G T FGA Intron 0.22 TCGA-06-5416-01 4 155749305 155749305 G A RBM46 3'UTR 0.24 TCGA-06-5416-01 4 15602862 15602862 C A CC2D2A Missense_Mutation p.F1559L 0.28 tolerated(0.32) benign(0.036) TCGA-06-5416-01 4 15627093 15627093 C T FBXL5 Silent p.A544A 0.31 TCGA-06-5416-01 4 156273804 156273804 T C MAP9 Missense_Mutation p.R589G 0.53 tolerated(0.12) possibly_damaging(0.628) TCGA-06-5416-01 4 156294317 156294317 C A MAP9 Missense_Mutation p.R151I 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 15629646 15629646 C T FBXL5 Silent p.A301A 0.29 TCGA-06-5416-01 4 15646259 15646259 C T FBXL5 Missense_Mutation p.E53K 0.49 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 4 156631947 156631947 C A GUCY1A3 Silent p.T210T 0.22 TCGA-06-5416-01 4 156632156 156632156 C T GUCY1A3 Missense_Mutation p.S280L 0.91 deleterious(0.01) probably_damaging(0.971) TCGA-06-5416-01 4 156751068 156751068 G T ASIC5 Silent p.T486T 0.46 TCGA-06-5416-01 4 156753064 156753064 C A ASIC5 Missense_Mutation p.E413D 0.17 tolerated(0.07) benign(0.062) TCGA-06-5416-01 4 156763436 156763436 C T ASIC5 Missense_Mutation p.S311N 0.10 deleterious(0.04) benign(0.35) TCGA-06-5416-01 4 156773372 156773372 C T ASIC5 Missense_Mutation p.G228S 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 156841177 156841177 C T TDO2 3'UTR 0.19 TCGA-06-5416-01 4 15717384 15717384 C T BST1 Silent p.I222I 0.17 TCGA-06-5416-01 4 158091762 158091762 C A GLRB Missense_Mutation p.P459H 0.29 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 4 15842138 15842138 A T CD38 Missense_Mutation p.Q272H 0.56 tolerated(0.14) benign(0) TCGA-06-5416-01 4 159051958 159051958 T G FAM198B Missense_Mutation p.K452N 0.50 deleterious(0) possibly_damaging(0.846) TCGA-06-5416-01 4 159091772 159091772 G A FAM198B Silent p.G252G 0.24 TCGA-06-5416-01 4 15937858 15937858 G A FGFBP1 Missense_Mutation p.A133V 0.30 tolerated(1) benign(0.002) TCGA-06-5416-01 4 159593584 159593584 A G ETFDH 5'UTR 0.07 TCGA-06-5416-01 4 159601629 159601629 C A ETFDH Nonsense_Mutation p.C15* 0.33 TCGA-06-5416-01 4 159627997 159627997 C A ETFDH Missense_Mutation p.P562H 0.06 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 4 15964659 15964659 C T FGFBP2 Missense_Mutation p.E32K 0.26 deleterious(0.01) possibly_damaging(0.895) TCGA-06-5416-01 4 159780299 159780299 C A FNIP2 Silent p.I316I 0.22 TCGA-06-5416-01 4 159790268 159790268 G A FNIP2 Missense_Mutation p.G827E 0.25 tolerated(0.62) benign(0.001) TCGA-06-5416-01 4 160264163 160264163 G A RAPGEF2 Missense_Mutation p.R823Q 0.30 deleterious(0.03) probably_damaging(0.974) TCGA-06-5416-01 4 160264176 160264176 G A RAPGEF2 Silent p.E827E 0.15 TCGA-06-5416-01 4 160274853 160274853 G A RAPGEF2 Missense_Mutation p.G1275R 0.47 tolerated_low_confidence(0.48) benign(0.004) TCGA-06-5416-01 4 160277253 160277253 G A RAPGEF2 Missense_Mutation p.E1473K 0.25 tolerated_low_confidence(0.25) benign(0.029) TCGA-06-5416-01 4 16164929 16164929 A C TAPT1 3'UTR 0.22 TCGA-06-5416-01 4 16215509 16215509 A G TAPT1 Missense_Mutation p.L71S 0.16 tolerated(0.18) benign(0.059) TCGA-06-5416-01 4 162459360 162459360 C A FSTL5 Missense_Mutation p.D424Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 162841588 162841588 G A FSTL5 Missense_Mutation p.T126I 0.16 tolerated(0.34) benign(0.008) TCGA-06-5416-01 4 1643286 1643286 C T FAM53A Missense_Mutation p.D311N 0.25 tolerated(0.06) benign(0.01) TCGA-06-5416-01 4 164393278 164393278 C T TKTL2 Missense_Mutation p.D537N 0.51 deleterious(0.01) possibly_damaging(0.506) TCGA-06-5416-01 4 164393295 164393295 A C TKTL2 Missense_Mutation p.I531S 0.11 deleterious(0) possibly_damaging(0.615) TCGA-06-5416-01 4 164415865 164415865 G A TMA16 5'UTR 0.39 TCGA-06-5416-01 4 164438612 164438612 A C TMA16 Missense_Mutation p.N139H 0.34 tolerated(0.68) benign(0.02) TCGA-06-5416-01 4 165891072 165891072 G T TRIM61 Missense_Mutation p.T28N 0.35 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 4 165961487 165961487 G T TRIM60 Missense_Mutation p.R88I 0.54 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 4 165962393 165962393 G A TRIM60 Missense_Mutation p.R390Q 0.28 tolerated(0.25) benign(0.259) TCGA-06-5416-01 4 166307401 166307401 T C CPE Intron 0.26 TCGA-06-5416-01 4 166929130 166929130 G T TLL1 Nonsense_Mutation p.E283* 0.20 TCGA-06-5416-01 4 166976288 166976288 A C TLL1 Missense_Mutation p.N529H 0.50 deleterious(0.01) possibly_damaging(0.502) TCGA-06-5416-01 4 167020546 167020546 G A TLL1 Missense_Mutation p.R925Q 0.34 tolerated(0.41) benign(0.003) TCGA-06-5416-01 4 167021905 167021905 G T TLL1 Missense_Mutation p.E973D 0.10 tolerated(0.37) benign(0.05) TCGA-06-5416-01 4 169146739 169146739 C T DDX60 Missense_Mutation p.R1541Q 0.39 tolerated(0.08) benign(0.002) TCGA-06-5416-01 4 169167743 169167743 A G DDX60 Silent p.G1330G 0.40 TCGA-06-5416-01 4 169196575 169196575 T G DDX60 Missense_Mutation p.Y742S 0.19 deleterious(0) possibly_damaging(0.835) TCGA-06-5416-01 4 169201630 169201630 A G DDX60 Silent p.L612L 0.22 TCGA-06-5416-01 4 169204690 169204690 C T DDX60 Silent p.G543G 0.28 TCGA-06-5416-01 4 169296661 169296661 T G DDX60L Missense_Mutation p.E1500D 0.47 tolerated(1) benign(0) TCGA-06-5416-01 4 169315660 169315660 C T DDX60L Missense_Mutation p.E1256K 0.51 tolerated(0.06) possibly_damaging(0.793) TCGA-06-5416-01 4 169327165 169327165 C T DDX60L Missense_Mutation p.R1050K 0.40 tolerated(0.34) benign(0.085) TCGA-06-5416-01 4 169393905 169393905 A G DDX60L 5'UTR 0.20 TCGA-06-5416-01 4 169633029 169633029 T G PALLD Missense_Mutation p.L640R 0.25 tolerated(0.2) benign(0.006) TCGA-06-5416-01 4 170057633 170057633 G A SH3RF1 Missense_Mutation p.R302W 0.15 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 4 170359311 170359311 G T NEK1 Missense_Mutation p.S896Y 0.44 deleterious(0.05) benign(0.031) TCGA-06-5416-01 4 170498163 170498163 G A NEK1 Silent p.A312A 0.48 TCGA-06-5416-01 4 170506623 170506623 G T NEK1 Silent p.S228S 0.16 TCGA-06-5416-01 4 170520292 170520292 G A NEK1 Nonsense_Mutation p.R91* 0.50 TCGA-06-5416-01 4 170618585 170618585 G A CLCN3 Silent p.T421T 0.39 TCGA-06-5416-01 4 170618761 170618761 C T CLCN3 Missense_Mutation p.A480V 0.21 tolerated(0.56) benign(0.282) TCGA-06-5416-01 4 170663158 170663158 C G C4orf27 Missense_Mutation p.G200R 0.43 deleterious(0.01) possibly_damaging(0.562) TCGA-06-5416-01 4 170674922 170674922 C T C4orf27 Missense_Mutation p.R38Q 0.47 tolerated(0.11) benign(0.016) TCGA-06-5416-01 4 170913069 170913069 G A MFAP3L Silent p.F230F 0.62 TCGA-06-5416-01 4 171010892 171010892 A C AADAT 5'UTR 0.32 TCGA-06-5416-01 4 173730639 173730639 C T GALNTL6 Silent p.V227V 0.21 TCGA-06-5416-01 4 173734758 173734758 C T GALNTL6 Silent p.F269F 0.52 TCGA-06-5416-01 4 173734800 173734800 C T GALNTL6 Silent p.F283F 0.33 TCGA-06-5416-01 4 173961262 173961262 G T GALNTL6 3'UTR 0.18 TCGA-06-5416-01 4 174169165 174169165 G A GALNT7 Missense_Mutation p.R54Q 0.22 tolerated_low_confidence(0.41) benign(0.023) TCGA-06-5416-01 4 174312343 174312343 C T SCRG1 Missense_Mutation p.E75K 0.25 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 4 174448377 174448377 C T HAND2 3'UTR 0.28 TCGA-06-5416-01 4 175220237 175220237 G A CEP44 5'UTR 0.42 TCGA-06-5416-01 4 17528596 17528596 C T CLRN2 Missense_Mutation p.S197L 0.58 tolerated(1) benign(0.035) TCGA-06-5416-01 4 17528666 17528666 C T CLRN2 Silent p.I220I 0.28 TCGA-06-5416-01 4 17528667 17528667 G A CLRN2 Missense_Mutation p.E221K 0.33 tolerated(0.07) probably_damaging(0.986) TCGA-06-5416-01 4 175443097 175443097 C A HPGD Missense_Mutation p.R72I 0.46 deleterious(0.01) benign(0.273) TCGA-06-5416-01 4 175580277 175580277 C T GLRA3 Silent p.E333E 0.19 TCGA-06-5416-01 4 175598245 175598245 C T GLRA3 Missense_Mutation p.R304Q 0.30 deleterious(0.04) possibly_damaging(0.85) TCGA-06-5416-01 4 175896956 175896956 C T ADAM29 Missense_Mutation p.P94S 0.07 deleterious(0.02) probably_damaging(0.994) TCGA-06-5416-01 4 176733191 176733191 A G GPM6A Intron 0.25 TCGA-06-5416-01 4 177046276 177046276 T C WDR17 Missense_Mutation p.V211A 0.40 tolerated(0.09) probably_damaging(0.989) TCGA-06-5416-01 4 177052781 177052781 G T WDR17 Missense_Mutation p.Q354H 0.13 tolerated_low_confidence(0.08) benign(0.003) TCGA-06-5416-01 4 177063141 177063141 C T WDR17 Nonsense_Mutation p.R508* 0.51 TCGA-06-5416-01 4 177105867 177105867 C T SPATA4 3'UTR 0.31 TCGA-06-5416-01 4 177190108 177190108 G A ASB5 Missense_Mutation p.A51V 0.23 deleterious(0) possibly_damaging(0.821) TCGA-06-5416-01 4 177190192 177190192 G A ASB5 Missense_Mutation p.S23L 0.52 deleterious_low_confidence(0) benign(0.104) TCGA-06-5416-01 4 177248366 177248366 G A SPCS3 Silent p.P116P 0.47 TCGA-06-5416-01 4 17805027 17805027 G T DCAF16 3'UTR 0.24 TCGA-06-5416-01 4 17805434 17805434 G A DCAF16 Missense_Mutation p.P111S 0.27 tolerated_low_confidence(0.13) probably_damaging(0.932) TCGA-06-5416-01 4 17805629 17805629 A C DCAF16 Missense_Mutation p.L46V 0.35 deleterious_low_confidence(0) benign(0.01) TCGA-06-5416-01 4 17814561 17814561 G T NCAPG Missense_Mutation p.A113S 0.30 deleterious(0.03) benign(0.217) TCGA-06-5416-01 4 17814686 17814686 G A NCAPG Silent p.K154K 0.55 TCGA-06-5416-01 4 178897048 178897048 G A LINC01098 Missense_Mutation p.S84N 0.48 deleterious_low_confidence(0) benign(0.393) TCGA-06-5416-01 4 1804675 1804675 G A FGFR3 Missense_Mutation p.R322H 0.53 deleterious(0.01) benign(0.322) TCGA-06-5416-01 4 1807292 1807292 C T FGFR3 Missense_Mutation p.A516V 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-06-5416-01 4 1816284 1816284 T C LETM1 Missense_Mutation p.D696G 0.31 tolerated(0.72) benign(0.082) TCGA-06-5416-01 4 183267811 183267811 T G TENM3 Missense_Mutation p.N80K 0.16 deleterious_low_confidence(0.04) possibly_damaging(0.728) TCGA-06-5416-01 4 183522167 183522167 C T TENM3 Missense_Mutation p.T201I 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.803) TCGA-06-5416-01 4 183664378 183664378 C T TENM3 Silent p.V1145V 0.35 TCGA-06-5416-01 4 183664489 183664489 C T TENM3 Silent p.I1182I 0.43 TCGA-06-5416-01 4 183676246 183676246 C T TENM3 Nonsense_Mutation p.R1576* 0.33 TCGA-06-5416-01 4 183713436 183713436 C T TENM3 Missense_Mutation p.L1871F 0.18 deleterious(0) possibly_damaging(0.86) TCGA-06-5416-01 4 183714007 183714007 T C TENM3 Missense_Mutation p.V2061A 0.13 deleterious(0) possibly_damaging(0.539) TCGA-06-5416-01 4 183714617 183714617 C T TENM3 Silent p.N2264N 0.59 TCGA-06-5416-01 4 183812555 183812555 C A DCTD Missense_Mutation p.Q189H 0.20 tolerated_low_confidence(0.1) benign(0.002) TCGA-06-5416-01 4 184129236 184129236 G T WWC2 Missense_Mutation p.R124S 0.17 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 4 184169870 184169870 C A WWC2 Missense_Mutation p.L246I 0.15 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 4 184175140 184175140 C T WWC2 Missense_Mutation p.A395V 0.18 tolerated(0.05) possibly_damaging(0.884) TCGA-06-5416-01 4 184241474 184241474 C T CLDN22 5'UTR 0.13 TCGA-06-5416-01 4 184368486 184368486 G T CDKN2AIP Missense_Mutation p.R550I 0.48 deleterious(0) possibly_damaging(0.802) TCGA-06-5416-01 4 184431754 184431754 T G ING2 Missense_Mutation p.C164W 0.22 tolerated(0.06) possibly_damaging(0.602) TCGA-06-5416-01 4 184580103 184580103 C A RWDD4 Translation_Start_Site p.M1? 0.27 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 4 185074858 185074858 G A ENPP6 Silent p.I90I 0.42 TCGA-06-5416-01 4 185550388 185550388 G A CASP3 3'UTR 0.28 TCGA-06-5416-01 4 185550407 185550407 C A CASP3 3'UTR 0.15 TCGA-06-5416-01 4 185612830 185612830 A G PRIMPOL Silent p.L463L 0.36 TCGA-06-5416-01 4 185623279 185623279 G A CENPU Silent p.S296S 0.17 TCGA-06-5416-01 4 185678381 185678381 G A ACSL1 Silent p.I665I 0.08 TCGA-06-5416-01 4 185940864 185940864 G A HELT Silent p.A117A 0.44 TCGA-06-5416-01 4 186188133 186188133 G A SNX25 Silent p.P141P 0.20 TCGA-06-5416-01 4 186267693 186267693 C T SNX25 Silent p.C566C 0.39 TCGA-06-5416-01 4 186294132 186294132 C A LRP2BP Silent p.T227T 0.47 TCGA-06-5416-01 4 186321606 186321606 A G UFSP2 Silent p.D450D 0.54 TCGA-06-5416-01 4 186336932 186336932 G A UFSP2 Silent p.H141H 0.11 TCGA-06-5416-01 4 186380191 186380191 A G CCDC110 Missense_Mutation p.V517A 0.14 tolerated(0.41) benign(0.015) TCGA-06-5416-01 4 186381137 186381137 G A CCDC110 Missense_Mutation p.R202C 0.43 tolerated(0.29) possibly_damaging(0.466) TCGA-06-5416-01 4 186544722 186544722 A G SORBS2 Missense_Mutation p.S717P 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 4 187000131 187000131 C A TLR3 Silent p.I193I 0.39 TCGA-06-5416-01 4 187006071 187006071 T C TLR3 3'UTR 0.29 TCGA-06-5416-01 4 187088183 187088183 C T FAM149A Missense_Mutation p.S409L 0.46 tolerated(0.16) benign(0.063) TCGA-06-5416-01 4 187172801 187172801 G A KLKB1 Silent p.E343E 0.44 TCGA-06-5416-01 4 187454921 187454921 G A MTNR1A Silent p.N325N 0.24 TCGA-06-5416-01 4 187455566 187455566 G A MTNR1A Silent p.S110S 0.38 TCGA-06-5416-01 4 187517947 187517947 C T FAT1 Silent p.V4249V 0.39 TCGA-06-5416-01 4 187524439 187524439 G T FAT1 Missense_Mutation p.F3747L 0.12 benign(0.035) TCGA-06-5416-01 4 188924003 188924003 G A ZFP42 Silent p.Q14Q 0.47 TCGA-06-5416-01 4 188924303 188924303 C A ZFP42 Missense_Mutation p.S114R 0.22 deleterious(0.04) benign(0.026) TCGA-06-5416-01 4 188924317 188924317 C T ZFP42 Missense_Mutation p.S119F 0.10 deleterious(0) possibly_damaging(0.621) TCGA-06-5416-01 4 188924594 188924594 T G ZFP42 Missense_Mutation p.I211M 0.13 deleterious(0) possibly_damaging(0.5) TCGA-06-5416-01 4 188924852 188924852 A G ZFP42 Silent p.L297L 0.20 TCGA-06-5416-01 4 189060943 189060943 C T TRIML1 Silent p.I77I 0.25 TCGA-06-5416-01 4 189063614 189063614 G T TRIML1 Missense_Mutation p.S238I 0.24 tolerated(0.15) benign(0.07) TCGA-06-5416-01 4 189068268 189068268 C T TRIML1 Silent p.I383I 0.21 TCGA-06-5416-01 4 1936958 1936958 G T WHSC1 Missense_Mutation p.R548I 0.21 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 4 1941507 1941507 T C WHSC1 Splice_Site p.X627_splice 0.27 TCGA-06-5416-01 4 1962843 1962843 G A WHSC1 Missense_Mutation p.D1113N 0.30 tolerated(0.72) benign(0.094) TCGA-06-5416-01 4 20533625 20533625 A T SLIT2 Missense_Mutation p.E544D 0.22 tolerated(0.18) possibly_damaging(0.895) TCGA-06-5416-01 4 20620555 20620555 G A SLIT2 Missense_Mutation p.E1505K 0.29 tolerated(0.48) benign(0.062) TCGA-06-5416-01 4 20751327 20751327 G A KCNIP4 Silent p.F129F 0.28 TCGA-06-5416-01 4 2209801 2209801 G A POLN Silent p.S209S 0.28 TCGA-06-5416-01 4 22389717 22389717 C T GPR125 Missense_Mutation p.D1193N 0.26 tolerated(0.08) probably_damaging(0.994) TCGA-06-5416-01 4 22390133 22390133 C A GPR125 Missense_Mutation p.R1054I 0.24 deleterious(0.03) possibly_damaging(0.794) TCGA-06-5416-01 4 22390750 22390750 G A GPR125 Missense_Mutation p.A895V 0.30 tolerated(1) probably_damaging(0.997) TCGA-06-5416-01 4 2242612 2242612 T C HAUS3 Missense_Mutation p.N21S 0.22 tolerated(0.74) benign(0) TCGA-06-5416-01 4 22737809 22737809 G A GBA3 Silent p.T88T 0.19 TCGA-06-5416-01 4 2307066 2307066 G T ZFYVE28 Missense_Mutation p.S334Y 0.10 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 4 2321976 2321976 C A ZFYVE28 Nonsense_Mutation p.G242* 0.31 TCGA-06-5416-01 4 23803901 23803901 C T PPARGC1A Missense_Mutation p.R696H 0.05 deleterious(0) unknown(0) TCGA-06-5416-01 4 23814382 23814382 C A PPARGC1A Missense_Mutation p.R669S 0.28 deleterious(0.02) unknown(0) TCGA-06-5416-01 4 23815457 23815457 G T PPARGC1A Missense_Mutation p.S550Y 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 4 24838118 24838118 C A CCDC149 Missense_Mutation p.E225D 0.06 tolerated(0.07) benign(0.329) TCGA-06-5416-01 4 25005431 25005431 C T LGI2 Missense_Mutation p.R427Q 0.48 tolerated(0.44) possibly_damaging(0.732) TCGA-06-5416-01 4 25005451 25005451 T C LGI2 Silent p.V420V 0.45 TCGA-06-5416-01 4 25019657 25019657 C A LGI2 Missense_Mutation p.K203N 0.51 deleterious(0.05) possibly_damaging(0.701) TCGA-06-5416-01 4 25125446 25125446 C A SEPSECS 3'UTR 0.33 TCGA-06-5416-01 4 25157740 25157740 G A SEPSECS Nonsense_Mutation p.R156* 0.29 TCGA-06-5416-01 4 25260678 25260678 T G PI4K2B Missense_Mutation p.F259C 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 25335533 25335533 G A ZCCHC4 Silent p.L203L 0.22 TCGA-06-5416-01 4 25418180 25418180 G T ANAPC4 Missense_Mutation p.D679Y 0.06 tolerated(0.23) possibly_damaging(0.643) TCGA-06-5416-01 4 25667803 25667803 T C SLC34A2 Silent p.L145L 0.34 TCGA-06-5416-01 4 25836894 25836894 C T SEL1L3 Missense_Mutation p.G262D 0.56 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 26407808 26407808 G A RBPJ Missense_Mutation p.R37Q 0.27 tolerated(0.22) benign(0.072) TCGA-06-5416-01 4 26430384 26430384 G T RBPJ Missense_Mutation p.D277Y 0.07 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 26432729 26432729 C A RBPJ 3'UTR 0.27 TCGA-06-5416-01 4 26483514 26483514 G A CCKAR Missense_Mutation p.R345C 0.29 deleterious(0.01) possibly_damaging(0.69) TCGA-06-5416-01 4 26483581 26483581 G T CCKAR Missense_Mutation p.F322L 0.52 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 4 265054 265054 C A ZNF732 Missense_Mutation p.R531I 0.32 deleterious(0.02) benign(0) TCGA-06-5416-01 4 265139 265139 C T ZNF732 Missense_Mutation p.E503K 0.41 tolerated(1) benign(0) TCGA-06-5416-01 4 2664677 2664677 G A FAM193A Missense_Mutation p.E329K 0.56 deleterious(0.01) probably_damaging(0.98) TCGA-06-5416-01 4 26690000 26690000 T C TBC1D19 Missense_Mutation p.Y309H 0.27 deleterious(0) possibly_damaging(0.788) TCGA-06-5416-01 4 2692543 2692543 G T FAM193A Missense_Mutation p.K592N 0.20 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 4 2692614 2692614 C T FAM193A Missense_Mutation p.T616M 0.27 tolerated(0.08) probably_damaging(0.997) TCGA-06-5416-01 4 2698233 2698233 G A FAM193A Silent p.E849E 0.20 TCGA-06-5416-01 4 2824663 2824663 G A SH3BP2 Nonsense_Mutation p.W103* 0.40 TCGA-06-5416-01 4 2828991 2828991 G A SH3BP2 Missense_Mutation p.A212T 0.24 tolerated(0.13) possibly_damaging(0.676) TCGA-06-5416-01 4 289870 289870 C A ZNF732 Missense_Mutation p.Q26H 0.24 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 4 3024138 3024138 T C GRK4 Intron 0.35 TCGA-06-5416-01 4 3040177 3040177 G A GRK4 Silent p.K540K 0.32 TCGA-06-5416-01 4 30723326 30723326 G A PCDH7 Silent p.E94E 0.27 TCGA-06-5416-01 4 30725226 30725226 G A PCDH7 Missense_Mutation p.V728I 0.09 deleterious(0.03) probably_damaging(0.954) TCGA-06-5416-01 4 3117856 3117856 C A HTT Missense_Mutation p.L312I 0.20 possibly_damaging(0.807) TCGA-06-5416-01 4 3174089 3174089 C T HTT Nonsense_Mutation p.R1303* 0.27 TCGA-06-5416-01 4 3208624 3208624 C T HTT Silent p.L1997L 0.20 TCGA-06-5416-01 4 3237889 3237889 C A HTT Silent p.V2933V 0.22 TCGA-06-5416-01 4 3241758 3241758 G A HTT Missense_Mutation p.R3134Q 0.25 benign(0.002) TCGA-06-5416-01 4 331747 331747 C T ZNF141 5'UTR 0.30 TCGA-06-5416-01 4 3432184 3432184 C T RGS12 Missense_Mutation p.R1206C 0.41 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 3441305 3441305 C T RGS12 Missense_Mutation p.S1413L 0.26 tolerated_low_confidence(0.37) benign(0) TCGA-06-5416-01 4 3495300 3495300 G T DOK7 3'UTR 0.37 TCGA-06-5416-01 4 36085055 36085055 C A ARAP2 Missense_Mutation p.K1481N 0.28 deleterious(0) possibly_damaging(0.892) TCGA-06-5416-01 4 36122885 36122885 G T ARAP2 Silent p.S1270S 0.26 TCGA-06-5416-01 4 36126561 36126561 T G ARAP2 Missense_Mutation p.K1223N 0.39 deleterious(0.01) benign(0.392) TCGA-06-5416-01 4 36212222 36212222 C T ARAP2 Missense_Mutation p.R426K 0.29 tolerated(0.51) benign(0.005) TCGA-06-5416-01 4 37650952 37650952 G A RELL1 Missense_Mutation p.R87C 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 3769715 3769715 G T ADRA2C Missense_Mutation p.R461M 0.13 tolerated_low_confidence(0.11) unknown(0) TCGA-06-5416-01 4 38022242 38022242 A G TBC1D1 Missense_Mutation p.I335V 0.45 deleterious(0.04) benign(0.244) TCGA-06-5416-01 4 38138914 38138914 C T TBC1D1 Silent p.D1155D 0.27 TCGA-06-5416-01 4 38776584 38776584 C T TLR10 Missense_Mutation p.G210R 0.19 tolerated(0.13) probably_damaging(0.997) TCGA-06-5416-01 4 38776939 38776939 G T TLR10 Silent p.T91T 0.21 TCGA-06-5416-01 4 38798704 38798704 G A TLR1 Silent p.I583I 0.22 TCGA-06-5416-01 4 38830468 38830468 G A TLR6 Silent p.F209F 0.44 TCGA-06-5416-01 4 38830705 38830705 G T TLR6 Missense_Mutation p.F130L 0.19 deleterious(0.01) benign(0.071) TCGA-06-5416-01 4 38916576 38916576 G A FAM114A1 Missense_Mutation p.R276K 0.17 tolerated(0.11) probably_damaging(0.999) TCGA-06-5416-01 4 39233806 39233806 G A WDR19 Missense_Mutation p.A723T 0.45 tolerated(0.12) benign(0.26) TCGA-06-5416-01 4 39280255 39280255 G T WDR19 Silent p.T1338T 0.42 TCGA-06-5416-01 4 39310281 39310281 C A RFC1 Missense_Mutation p.K620N 0.39 deleterious(0.03) benign(0.066) TCGA-06-5416-01 4 39318576 39318576 G A RFC1 Nonsense_Mutation p.R388* 0.16 TCGA-06-5416-01 4 39436081 39436081 G T KLB Missense_Mutation p.E359D 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 4 3944926 3944926 G A FAM86EP RNA 0.30 TCGA-06-5416-01 4 39924318 39924318 G T PDS5A Missense_Mutation p.S193Y 0.46 deleterious(0) probably_damaging(0.956) TCGA-06-5416-01 4 40045386 40045386 C T RP11-333E13.4 RNA 0.40 TCGA-06-5416-01 4 40103837 40103837 G T N4BP2 Missense_Mutation p.E124D 0.19 tolerated(0.12) benign(0.009) TCGA-06-5416-01 4 40123635 40123635 G T N4BP2 Nonsense_Mutation p.E1302* 0.18 TCGA-06-5416-01 4 40245409 40245409 G T RHOH Nonsense_Mutation p.E135* 0.12 TCGA-06-5416-01 4 40356660 40356660 T G CHRNA9 3'UTR 0.46 TCGA-06-5416-01 4 40440203 40440203 G A RBM47 Silent p.D236D 0.40 TCGA-06-5416-01 4 40776871 40776871 G T NSUN7 Silent p.V243V 0.21 TCGA-06-5416-01 4 41691602 41691602 G A LIMCH1 Missense_Mutation p.A1025T 0.41 deleterious(0) possibly_damaging(0.79) TCGA-06-5416-01 4 41984925 41984926 - A DCAF4L1 Frame_Shift_Ins p.G373Rfs*39 0.32 TCGA-06-5416-01 4 4199552 4199552 C A OTOP1 Missense_Mutation p.G337W 0.58 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 420742 420742 C T ABCA11P RNA 0.18 TCGA-06-5416-01 4 42145771 42145771 G T BEND4 Missense_Mutation p.S243Y 0.20 deleterious_low_confidence(0) probably_damaging(0.974) TCGA-06-5416-01 4 42403155 42403155 G A SHISA3 Missense_Mutation p.R135H 0.23 tolerated(0.05) probably_damaging(0.999) TCGA-06-5416-01 4 42425665 42425665 C T ATP8A1 Missense_Mutation p.A1061T 0.19 tolerated(0.41) benign(0) TCGA-06-5416-01 4 42466710 42466710 G A ATP8A1 Silent p.I872I 0.24 TCGA-06-5416-01 4 42627636 42627636 G T ATP8A1 Missense_Mutation p.L87M 0.35 tolerated(0.13) probably_damaging(0.996) TCGA-06-5416-01 4 42629026 42629026 G A ATP8A1 Silent p.C50C 0.51 TCGA-06-5416-01 4 4283620 4283620 C T LYAR Missense_Mutation p.D43N 0.59 tolerated(0.07) benign(0.104) TCGA-06-5416-01 4 4322554 4322554 C T ZBTB49 Silent p.I603I 0.24 TCGA-06-5416-01 4 437919 437919 C T ZNF721 Missense_Mutation p.E113K 0.06 tolerated(0.25) benign(0.202) TCGA-06-5416-01 4 44450583 44450583 T C KCTD8 5'UTR 0.33 TCGA-06-5416-01 4 44704971 44704971 G T GNPDA2 3'UTR 0.21 TCGA-06-5416-01 4 46060509 46060509 C T GABRG1 Silent p.T252T 0.16 TCGA-06-5416-01 4 46067402 46067402 C T GABRG1 Missense_Mutation p.G174E 0.15 deleterious(0) possibly_damaging(0.845) TCGA-06-5416-01 4 46314549 46314549 C T GABRA2 Missense_Mutation p.R147Q 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 4 46334648 46334648 A G GABRA2 Missense_Mutation p.V80A 0.15 deleterious(0.04) probably_damaging(0.947) TCGA-06-5416-01 4 46737025 46737025 C A COX7B2 Missense_Mutation p.G62V 0.48 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 4 46930741 46930741 C A GABRA4 Missense_Mutation p.R389I 0.50 deleterious(0.05) probably_damaging(0.995) TCGA-06-5416-01 4 46994864 46994864 C T GABRA4 Silent p.R62R 0.15 TCGA-06-5416-01 4 47514781 47514781 G A ATP10D Missense_Mutation p.R75Q 0.22 tolerated(0.12) benign(0.006) TCGA-06-5416-01 4 47517655 47517655 G A ATP10D Silent p.Q151Q 0.16 TCGA-06-5416-01 4 47589179 47589179 C A ATP10D Missense_Mutation p.F1299L 0.41 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 4 47625592 47625592 C T CORIN Missense_Mutation p.E846K 0.17 tolerated(0.06) benign(0.343) TCGA-06-5416-01 4 47682245 47682245 G A CORIN Missense_Mutation p.R349C 0.19 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 4 47695011 47695011 C T CORIN Missense_Mutation p.D297N 0.12 deleterious(0) possibly_damaging(0.904) TCGA-06-5416-01 4 47850352 47850352 G A NFXL1 Missense_Mutation p.A855V 0.23 tolerated(0.06) probably_damaging(0.917) TCGA-06-5416-01 4 47938824 47938824 C T CNGA1 Missense_Mutation p.A632T 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 47939620 47939620 G T CNGA1 Silent p.I366I 0.22 TCGA-06-5416-01 4 48147492 48147492 C T TEC Missense_Mutation p.A396T 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 48169964 48169964 G A TEC Missense_Mutation p.P168S 0.19 tolerated(0.27) benign(0.231) TCGA-06-5416-01 4 48230548 48230548 C A TEC Missense_Mutation p.E28D 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 4 48384927 48384927 G A SLAIN2 Missense_Mutation p.S402N 0.35 tolerated(1) benign(0.001) TCGA-06-5416-01 4 48422456 48422456 C T SLAIN2 Missense_Mutation p.R559C 0.13 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 4 48517076 48517076 C T FRYL Missense_Mutation p.E2636K 0.45 tolerated_low_confidence(0.24) benign(0.328) TCGA-06-5416-01 4 48525088 48525088 G A FRYL Missense_Mutation p.R2451C 0.46 deleterious(0) possibly_damaging(0.816) TCGA-06-5416-01 4 48542519 48542519 C A FRYL Missense_Mutation p.S2049I 0.24 tolerated(0.12) benign(0.353) TCGA-06-5416-01 4 48546000 48546000 C T FRYL Missense_Mutation p.E1806K 0.24 deleterious(0.01) possibly_damaging(0.578) TCGA-06-5416-01 4 48552675 48552675 G A FRYL Missense_Mutation p.R1523W 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 4 4864475 4864475 C T MSX1 Missense_Mutation p.R173C 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 4864687 4864687 G A MSX1 Silent p.K243K 0.52 TCGA-06-5416-01 4 4864692 4864692 T C MSX1 Missense_Mutation p.M245T 0.32 deleterious(0.03) benign(0.157) TCGA-06-5416-01 4 48852084 48852084 G A OCIAD1 Missense_Mutation p.R121Q 0.21 tolerated(0.07) benign(0.022) TCGA-06-5416-01 4 48887546 48887546 C T OCIAD2 Silent p.K140K 0.17 TCGA-06-5416-01 4 48894797 48894797 C T OCIAD2 Silent p.Q125Q 0.23 TCGA-06-5416-01 4 49009321 49009321 G T CWH43 Missense_Mutation p.K388N 0.12 tolerated(0.16) benign(0.004) TCGA-06-5416-01 4 49040068 49040068 G A CWH43 Silent p.R558R 0.47 TCGA-06-5416-01 4 52740458 52740458 C A DCUN1D4 Missense_Mutation p.S53Y 0.23 tolerated_low_confidence(0.05) benign(0.001) TCGA-06-5416-01 4 52861213 52861213 C T LRRC66 Missense_Mutation p.G659S 0.15 tolerated(1) benign(0.002) TCGA-06-5416-01 4 52944983 52944983 C T SPATA18 Missense_Mutation p.S368L 0.20 tolerated(0.06) probably_damaging(0.947) TCGA-06-5416-01 4 53579475 53579475 C A SNORA26 RNA 0.22 TCGA-06-5416-01 4 54218835 54218835 C T SCFD2 Missense_Mutation p.A313T 0.43 tolerated(0.06) benign(0.047) TCGA-06-5416-01 4 54256780 54256780 C A FIP1L1 Missense_Mutation p.P164T 0.11 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 54265910 54265910 G T FIP1L1 Missense_Mutation p.R240I 0.46 deleterious(0) possibly_damaging(0.474) TCGA-06-5416-01 4 54265967 54265967 C A FIP1L1 Missense_Mutation p.S259Y 0.24 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 4 54324831 54324831 G A FIP1L1 Missense_Mutation p.R504Q 0.20 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 4 54347998 54347998 G A LNX1 Silent p.L458L 0.30 TCGA-06-5416-01 4 55130071 55130071 C A PDGFRA Missense_Mutation p.P202Q 0.24 tolerated(0.53) benign(0.001) TCGA-06-5416-01 4 55161481 55161481 C A PDGFRA 3'UTR 0.51 TCGA-06-5416-01 4 5527218 5527218 A G C4orf6 Missense_Mutation p.D54G 0.51 possibly_damaging(0.728) TCGA-06-5416-01 4 5586390 5586390 G A EVC2 Missense_Mutation p.T1006I 0.28 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 4 55964962 55964962 C T KDR Missense_Mutation p.E759K 0.20 deleterious(0.02) possibly_damaging(0.493) TCGA-06-5416-01 4 55987317 55987317 T C KDR Missense_Mutation p.I36M 0.43 deleterious(0.01) benign(0.418) TCGA-06-5416-01 4 56236222 56236222 G A SRD5A3 Silent p.P307P 0.38 TCGA-06-5416-01 4 5630400 5630400 C A EVC2 Missense_Mutation p.R591I 0.37 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 4 56325403 56325403 A G CLOCK Silent p.C195C 0.42 TCGA-06-5416-01 4 5667373 5667373 G T EVC2 Missense_Mutation p.L292M 0.29 tolerated(0.08) probably_damaging(0.971) TCGA-06-5416-01 4 56724544 56724544 C T EXOC1 Missense_Mutation p.R19C 0.43 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 4 56756404 56756404 C T EXOC1 Missense_Mutation p.S464L 0.42 deleterious(0.02) benign(0.122) TCGA-06-5416-01 4 56831896 56831896 C T CEP135 Silent p.V305V 0.10 TCGA-06-5416-01 4 56865491 56865491 G A CEP135 Missense_Mutation p.R678Q 0.23 tolerated(1) benign(0.01) TCGA-06-5416-01 4 56875983 56875983 G A CEP135 Missense_Mutation p.D807N 0.37 tolerated(0.17) benign(0.004) TCGA-06-5416-01 4 57190424 57190424 C A KIAA1211 Missense_Mutation p.S1178Y 0.21 deleterious(0) possibly_damaging(0.781) TCGA-06-5416-01 4 57194076 57194076 G A KIAA1211 3'UTR 0.27 TCGA-06-5416-01 4 57215480 57215480 G A AASDH Nonsense_Mutation p.R813* 0.38 TCGA-06-5416-01 4 57237768 57237768 G A AASDH Missense_Mutation p.A237V 0.28 deleterious(0) possibly_damaging(0.633) TCGA-06-5416-01 4 57676203 57676203 C A SPINK2 3'UTR 0.30 TCGA-06-5416-01 4 57777269 57777269 G T REST Missense_Mutation p.K155N 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 4 57796659 57796659 G T REST Missense_Mutation p.K545N 0.20 deleterious(0) possibly_damaging(0.511) TCGA-06-5416-01 4 57796972 57796972 G A REST Missense_Mutation p.E650K 0.51 tolerated(0.53) benign(0) TCGA-06-5416-01 4 57797893 57797893 G T REST Nonsense_Mutation p.E957* 0.21 TCGA-06-5416-01 4 57830617 57830617 G T NOA1 Missense_Mutation p.L614M 0.20 tolerated(0.08) benign(0.281) TCGA-06-5416-01 4 57877207 57877207 G A POLR2B Missense_Mutation p.E581K 0.43 tolerated(0.48) benign(0.407) TCGA-06-5416-01 4 57888327 57888327 C A POLR2B Missense_Mutation p.F810L 0.30 deleterious(0.04) possibly_damaging(0.626) TCGA-06-5416-01 4 57898591 57898591 C T IGFBP7 Splice_Site p.X277_splice 0.20 TCGA-06-5416-01 4 5811256 5811256 G T EVC Missense_Mutation p.Q900H 0.22 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 4 5811293 5811293 C T EVC Missense_Mutation p.P913S 0.25 tolerated(0.08) probably_damaging(0.979) TCGA-06-5416-01 4 59323 59323 G T ZNF595 Nonsense_Mutation p.E2* 0.09 TCGA-06-5416-01 4 59341 59341 G T ZNF595 Missense_Mutation p.D8Y 0.05 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-06-5416-01 4 5961032 5961032 C T C4orf50 3'UTR 0.36 TCGA-06-5416-01 4 6107214 6107214 C T JAKMIP1 Missense_Mutation p.D204N 0.65 deleterious(0) possibly_damaging(0.804) TCGA-06-5416-01 4 619588 619588 C T PDE6B Missense_Mutation p.A58V 0.65 tolerated(0.41) benign(0.002) TCGA-06-5416-01 4 62801757 62801757 C T LPHN3 Nonsense_Mutation p.R737* 0.31 TCGA-06-5416-01 4 6302518 6302518 C T WFS1 Silent p.I332I 0.26 TCGA-06-5416-01 4 65145760 65145760 C A TECRL 3'UTR 0.20 TCGA-06-5416-01 4 661650 661650 C A PDE6B Missense_Mutation p.F786L 0.24 tolerated(0.2) probably_damaging(0.976) TCGA-06-5416-01 4 66280068 66280068 G A EPHA5 Nonsense_Mutation p.R541* 0.48 TCGA-06-5416-01 4 66286229 66286229 G T EPHA5 Missense_Mutation p.S486Y 0.21 deleterious(0.01) possibly_damaging(0.832) TCGA-06-5416-01 4 68424561 68424561 C T STAP1 Missense_Mutation p.R12C 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 68536260 68536260 G A UBA6 Silent p.F199F 0.18 TCGA-06-5416-01 4 68562380 68562380 G A UBA6 Silent p.I39I 0.24 TCGA-06-5416-01 4 6873378 6873378 C A KIAA0232 Nonsense_Mutation p.Y1293* 0.19 TCGA-06-5416-01 4 68938084 68938084 T C TMPRSS11F Silent p.K157K 0.56 TCGA-06-5416-01 4 69101918 69101918 T C TMPRSS11B Missense_Mutation p.N64S 0.25 deleterious(0.01) benign(0.138) TCGA-06-5416-01 4 69184431 69184431 G A YTHDC1 Missense_Mutation p.R580C 0.10 deleterious(0.01) probably_damaging(0.925) TCGA-06-5416-01 4 69189872 69189872 G A YTHDC1 Silent p.I473I 0.32 TCGA-06-5416-01 4 69202862 69202862 C A YTHDC1 Missense_Mutation p.D256Y 0.24 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 4 69340463 69340463 C A TMPRSS11E Missense_Mutation p.D171E 0.10 tolerated(0.94) possibly_damaging(0.459) TCGA-06-5416-01 4 69535829 69535829 G A UGT2B15 Silent p.L170L 0.54 TCGA-06-5416-01 4 69816986 69816986 G A UGT2A3 Missense_Mutation p.P165S 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 4 69817007 69817007 T C UGT2A3 Missense_Mutation p.M158V 0.20 tolerated(0.77) benign(0.002) TCGA-06-5416-01 4 69817299 69817299 C T UGT2A3 Silent p.K60K 0.22 TCGA-06-5416-01 4 6996016 6996016 G A TBC1D14 Missense_Mutation p.E317K 0.24 deleterious(0) benign(0.389) TCGA-06-5416-01 4 69962358 69962358 G T UGT2B7 Missense_Mutation p.K40N 0.20 deleterious(0.05) possibly_damaging(0.895) TCGA-06-5416-01 4 69978270 69978270 G A UGT2B7 Missense_Mutation p.R469H 0.39 deleterious(0.03) benign(0.063) TCGA-06-5416-01 4 70079927 70079927 G A UGT2B11 Missense_Mutation p.L172F 0.53 tolerated(0.19) benign(0.11) TCGA-06-5416-01 4 7043043 7043043 G A CCDC96 Silent p.G541G 0.31 TCGA-06-5416-01 4 7043371 7043371 A C CCDC96 Missense_Mutation p.L432R 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 70504790 70504790 C A UGT2A2 Missense_Mutation p.R190I 0.29 deleterious(0) possibly_damaging(0.73) TCGA-06-5416-01 4 7056087 7056087 T C TADA2B Missense_Mutation p.V190A 0.26 deleterious(0.01) benign(0.306) TCGA-06-5416-01 4 71115020 71115020 C A CSN3 Silent p.I131I 0.13 TCGA-06-5416-01 4 71200953 71200953 A G CABS1 Missense_Mutation p.N66S 0.20 tolerated(0.14) possibly_damaging(0.866) TCGA-06-5416-01 4 71232548 71232548 C T SMR3A Missense_Mutation p.P81L 0.50 tolerated_low_confidence(0.68) unknown(0) TCGA-06-5416-01 4 71232578 71232578 C T SMR3A Missense_Mutation p.S91L 0.22 tolerated_low_confidence(0.14) unknown(0) TCGA-06-5416-01 4 71507979 71507979 C T ENAM Missense_Mutation p.T279I 0.13 tolerated(0.13) benign(0.209) TCGA-06-5416-01 4 71648872 71648872 G T RUFY3 Missense_Mutation p.S320I 0.29 deleterious(0.03) possibly_damaging(0.897) TCGA-06-5416-01 4 71654594 71654594 G T RUFY3 Missense_Mutation p.E381D 0.22 deleterious(0.02) benign(0.163) TCGA-06-5416-01 4 71698880 71698880 C T GRSF1 Missense_Mutation p.A209T 0.21 deleterious(0) possibly_damaging(0.848) TCGA-06-5416-01 4 71824624 71824624 G T MOB1B Missense_Mutation p.K21N 0.20 deleterious(0) possibly_damaging(0.707) TCGA-06-5416-01 4 71840906 71840906 G T MOB1B Missense_Mutation p.K109N 0.27 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 4 71891604 71891604 G A DCK Silent p.K207K 0.05 TCGA-06-5416-01 4 72120956 72120956 C T SLC4A4 Silent p.I31I 0.46 TCGA-06-5416-01 4 73013536 73013536 C T NPFFR2 3'UTR 0.27 TCGA-06-5416-01 4 73149252 73149252 G T ADAMTS3 Silent p.I1073I 0.32 TCGA-06-5416-01 4 73205310 73205310 G A ADAMTS3 Silent p.N254N 0.48 TCGA-06-5416-01 4 73414333 73414333 A G ADAMTS3 Silent p.D122D 0.44 TCGA-06-5416-01 4 73414419 73414419 G A ADAMTS3 Nonsense_Mutation p.R94* 0.41 TCGA-06-5416-01 4 73959897 73959897 T C ANKRD17 Silent p.G1742G 0.32 TCGA-06-5416-01 4 74270874 74270874 G T ALB Nonsense_Mutation p.E41* 0.15 TCGA-06-5416-01 4 74279239 74279239 G A ALB Missense_Mutation p.E316K 0.33 tolerated(0.07) benign(0.054) TCGA-06-5416-01 4 74280877 74280877 C T ALB Missense_Mutation p.A395V 0.42 tolerated(0.07) benign(0.004) TCGA-06-5416-01 4 74309146 74309146 G A AFP Missense_Mutation p.R233Q 0.51 deleterious(0.04) benign(0.017) TCGA-06-5416-01 4 74313347 74313347 G T AFP Missense_Mutation p.D338Y 0.20 deleterious(0.01) probably_damaging(0.914) TCGA-06-5416-01 4 74318321 74318321 G A AFP Silent p.A544A 0.14 TCGA-06-5416-01 4 7435464 7435464 G A PSAPL1 Silent p.I381I 0.30 TCGA-06-5416-01 4 74365824 74365824 G A AFM Missense_Mutation p.C509Y 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 74442010 74442010 G A RASSF6 Missense_Mutation p.A351V 0.22 tolerated(0.31) benign(0.055) TCGA-06-5416-01 4 74450909 74450909 G T RASSF6 Missense_Mutation p.F217L 0.11 deleterious(0) possibly_damaging(0.476) TCGA-06-5416-01 4 74453626 74453626 C T RASSF6 Missense_Mutation p.D137N 0.23 tolerated(0.15) benign(0.315) TCGA-06-5416-01 4 74702919 74702919 G T CXCL6 Splice_Site p.X81_splice 0.25 TCGA-06-5416-01 4 74735511 74735511 T C CXCL1 Splice_Site p.X75_splice 0.33 TCGA-06-5416-01 4 74853810 74853810 C T PPBP Missense_Mutation p.R4K 0.59 tolerated(0.11) benign(0.008) TCGA-06-5416-01 4 75167590 75167590 C A MTHFD2L 3'UTR 0.38 TCGA-06-5416-01 4 75174815 75174815 A G EPGN Missense_Mutation p.T17A 0.21 tolerated(0.71) benign(0.002) TCGA-06-5416-01 4 75178737 75178737 G A EPGN Missense_Mutation p.C86Y 0.21 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 4 75178768 75178768 G A EPGN Silent p.E96E 0.21 TCGA-06-5416-01 4 755103 755103 C T PCGF3 Missense_Mutation p.R167C 0.30 deleterious(0) possibly_damaging(0.818) TCGA-06-5416-01 4 7640097 7640097 C A SORCS2 Missense_Mutation p.L231I 0.17 tolerated(0.26) probably_damaging(0.997) TCGA-06-5416-01 4 76407746 76407746 C T RCHY1 3'UTR 0.25 TCGA-06-5416-01 4 76434095 76434095 G A RCHY1 Silent p.C87C 0.17 TCGA-06-5416-01 4 76573883 76573883 G A G3BP2 Missense_Mutation p.R290C 0.29 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 4 76573916 76573916 C T G3BP2 Missense_Mutation p.E279K 0.50 deleterious(0.03) benign(0.212) TCGA-06-5416-01 4 76582165 76582165 C T G3BP2 Missense_Mutation p.D129N 0.20 deleterious(0.01) possibly_damaging(0.902) TCGA-06-5416-01 4 76582899 76582899 C A G3BP2 Missense_Mutation p.V65L 0.23 tolerated(0.07) benign(0.014) TCGA-06-5416-01 4 76715025 76715025 C T USO1 Missense_Mutation p.L477F 0.28 deleterious(0) possibly_damaging(0.868) TCGA-06-5416-01 4 76804154 76804154 C A PPEF2 Missense_Mutation p.E286D 0.23 tolerated(0.27) possibly_damaging(0.906) TCGA-06-5416-01 4 76942938 76942938 A G CXCL10 3'UTR 0.18 TCGA-06-5416-01 4 77020221 77020221 G A ART3 Intron 0.45 TCGA-06-5416-01 4 77036584 77036584 C T NUP54 Missense_Mutation p.D487N 0.12 tolerated(0.06) probably_damaging(0.992) TCGA-06-5416-01 4 77057498 77057498 C T NUP54 Silent p.A121A 0.23 TCGA-06-5416-01 4 7714488 7714488 G A SORCS2 Missense_Mutation p.D633N 0.29 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 77230398 77230398 T G FAM47E-STBD1 Missense_Mutation p.C108G 0.25 tolerated(0.27) benign(0.002) TCGA-06-5416-01 4 77230856 77230856 G A FAM47E-STBD1 Silent p.G260G 0.40 TCGA-06-5416-01 4 7736057 7736057 C T SORCS2 Silent p.I1089I 0.50 TCGA-06-5416-01 4 77651992 77651992 A C SHROOM3 Missense_Mutation p.H164P 0.47 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 4 77660727 77660727 C A SHROOM3 Silent p.I467I 0.19 TCGA-06-5416-01 4 77661297 77661297 G T SHROOM3 Missense_Mutation p.K657N 0.27 deleterious(0.04) benign(0.203) TCGA-06-5416-01 4 77680718 77680718 T C SHROOM3 Missense_Mutation p.V1740A 0.27 tolerated(1) benign(0.02) TCGA-06-5416-01 4 77691984 77691984 C T SHROOM3 Missense_Mutation p.S1852L 0.28 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 4 7770611 7770611 C T AFAP1 Missense_Mutation p.G793D 0.32 tolerated(0.24) benign(0.066) TCGA-06-5416-01 4 77926846 77926846 C T SEPT11 Missense_Mutation p.R79W 0.37 deleterious(0.01) possibly_damaging(0.849) TCGA-06-5416-01 4 77952034 77952034 C T SEPT11 Silent p.F395F 0.32 TCGA-06-5416-01 4 77955736 77955736 T G SEPT11 3'UTR 0.50 TCGA-06-5416-01 4 77977221 77977221 C A CCNI Missense_Mutation p.S118I 0.19 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 4 7802347 7802347 C T AFAP1 Missense_Mutation p.R363Q 0.52 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 4 78532144 78532144 G T CXCL13 Missense_Mutation p.R94I 0.10 tolerated(0.13) benign(0.054) TCGA-06-5416-01 4 79362332 79362332 G A FRAS1 Missense_Mutation p.R1849K 0.11 probably_damaging(0.913) TCGA-06-5416-01 4 79403548 79403548 A G FRAS1 Missense_Mutation p.T2871A 0.23 benign(0.007) TCGA-06-5416-01 4 79417976 79417976 C A FRAS1 Silent p.V2992V 0.21 TCGA-06-5416-01 4 79418062 79418062 C T FRAS1 Missense_Mutation p.A3021V 0.56 probably_damaging(0.968) TCGA-06-5416-01 4 79458157 79458157 C A FRAS1 Missense_Mutation p.L3701I 0.35 possibly_damaging(0.677) TCGA-06-5416-01 4 79460452 79460452 G A FRAS1 Missense_Mutation p.R3768H 0.22 probably_damaging(0.999) TCGA-06-5416-01 4 79772193 79772193 A T BMP2K Missense_Mutation p.N289I 0.19 deleterious(0.02) possibly_damaging(0.845) TCGA-06-5416-01 4 79792179 79792179 C A BMP2K Missense_Mutation p.H492N 0.60 tolerated_low_confidence(0.3) unknown(0) TCGA-06-5416-01 4 79831879 79831879 A C BMP2K Missense_Mutation p.K726N 0.12 deleterious_low_confidence(0.05) unknown(0) TCGA-06-5416-01 4 79856383 79856383 G T PAQR3 Missense_Mutation p.F80L 0.25 tolerated(0.12) benign(0.401) TCGA-06-5416-01 4 80246785 80246785 G A NAA11 Missense_Mutation p.R83C 0.29 deleterious(0.03) benign(0.348) TCGA-06-5416-01 4 80329356 80329356 A G GK2 5'UTR 0.24 TCGA-06-5416-01 4 81123132 81123132 G A PRDM8 Silent p.A172A 0.49 TCGA-06-5416-01 4 81974674 81974674 C A BMP3 Missense_Mutation p.S468Y 0.34 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 4 8235103 8235103 G A SH3TC1 Missense_Mutation p.A1049T 0.34 deleterious(0) possibly_damaging(0.642) TCGA-06-5416-01 4 82380590 82380590 C A RASGEF1B Nonsense_Mutation p.E25* 0.38 TCGA-06-5416-01 4 83349280 83349281 - T HNRNPDL Frame_Shift_Ins p.R222Kfs*25 0.13 TCGA-06-5416-01 4 83369093 83369093 C T ENOPH1 Silent p.I35I 0.58 TCGA-06-5416-01 4 83557961 83557961 G A SCD5 Silent p.S195S 0.44 TCGA-06-5416-01 4 83582126 83582126 C T SCD5 Intron 0.20 TCGA-06-5416-01 4 83772729 83772729 C T SEC31A Missense_Mutation p.R728Q 0.16 tolerated(0.18) possibly_damaging(0.642) TCGA-06-5416-01 4 83859621 83859621 A G LIN54 Missense_Mutation p.S493P 0.13 tolerated(0.11) benign(0.265) TCGA-06-5416-01 4 83905697 83905697 T G LIN54 Missense_Mutation p.K101Q 0.51 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-06-5416-01 4 83978131 83978131 T C COPS4 Missense_Mutation p.Y155H 0.34 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 4 84015851 84015851 G A PLAC8 Missense_Mutation p.R113C 0.24 deleterious(0) possibly_damaging(0.676) TCGA-06-5416-01 4 8417718 8417718 G A ACOX3 Silent p.I51I 0.16 TCGA-06-5416-01 4 84370034 84370034 T G HELQ Missense_Mutation p.K365Q 0.40 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 4 84374566 84374566 G A HELQ Missense_Mutation p.A277V 0.49 tolerated(0.05) possibly_damaging(0.791) TCGA-06-5416-01 4 84376508 84376508 G A HELQ Intron 0.23 TCGA-06-5416-01 4 84457895 84457895 G T AGPAT9 Missense_Mutation p.K40N 0.34 tolerated(0.21) benign(0.005) TCGA-06-5416-01 4 84519271 84519271 G A AGPAT9 Missense_Mutation p.R355Q 0.54 tolerated(0.12) possibly_damaging(0.596) TCGA-06-5416-01 4 8472854 8472854 G T TRMT44 Missense_Mutation p.E657D 0.55 tolerated(0.19) benign(0.012) TCGA-06-5416-01 4 85419329 85419329 C T NKX6-1 Missense_Mutation p.S18N 0.61 tolerated(0.47) benign(0.213) TCGA-06-5416-01 4 85556473 85556473 G T CDS1 Missense_Mutation p.G260V 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 85609259 85609259 G A WDFY3 Missense_Mutation p.L3175F 0.47 deleterious(0.01) probably_damaging(0.943) TCGA-06-5416-01 4 85642680 85642680 C T WDFY3 Missense_Mutation p.G2496E 0.28 tolerated(0.48) benign(0.014) TCGA-06-5416-01 4 85656234 85656234 G A WDFY3 Missense_Mutation p.R2319C 0.39 tolerated(0.06) benign(0.068) TCGA-06-5416-01 4 85696067 85696067 G A WDFY3 Nonsense_Mutation p.R1554* 0.54 TCGA-06-5416-01 4 8584282 8584282 G T GPR78 Missense_Mutation p.Q231H 0.31 deleterious(0) possibly_damaging(0.637) TCGA-06-5416-01 4 8605819 8605819 G A CPZ Missense_Mutation p.A205T 0.52 tolerated(0.1) benign(0.024) TCGA-06-5416-01 4 8608470 8608470 G A CPZ Missense_Mutation p.G305S 0.26 tolerated(0.4) benign(0.089) TCGA-06-5416-01 4 86893293 86893293 C T ARHGAP24 Missense_Mutation p.A235V 0.20 deleterious(0) possibly_damaging(0.655) TCGA-06-5416-01 4 87028559 87028559 C A MAPK10 Intron 0.41 TCGA-06-5416-01 4 87622766 87622766 C T PTPN13 Missense_Mutation p.T336I 0.28 tolerated(0.1) benign(0.037) TCGA-06-5416-01 4 87638223 87638223 C A PTPN13 Silent p.L446L 0.39 TCGA-06-5416-01 4 87655912 87655912 T C PTPN13 Missense_Mutation p.Y679H 0.56 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 4 87694008 87694008 C T PTPN13 Missense_Mutation p.S1754L 0.15 tolerated(0.72) benign(0.008) TCGA-06-5416-01 4 88577693 88577693 C A DMP1 Missense_Mutation p.L17I 0.24 tolerated(0.21) possibly_damaging(0.729) TCGA-06-5416-01 4 88584093 88584093 G A DMP1 Missense_Mutation p.S388N 0.19 tolerated(0.26) probably_damaging(0.95) TCGA-06-5416-01 4 88759798 88759798 G T MEPE Missense_Mutation p.Q23H 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 4 88902675 88902675 G A SPP1 Missense_Mutation p.D89N 0.26 deleterious(0.04) probably_damaging(0.959) TCGA-06-5416-01 4 88983145 88983145 C A PKD2 Missense_Mutation p.L703I 0.23 tolerated(0.2) possibly_damaging(0.706) TCGA-06-5416-01 4 88996799 88996799 G A PKD2 Missense_Mutation p.G954S 0.21 deleterious_low_confidence(0.03) possibly_damaging(0.601) TCGA-06-5416-01 4 89061126 89061126 C T ABCG2 Missense_Mutation p.V8I 0.27 tolerated(0.53) benign(0.005) TCGA-06-5416-01 4 89189440 89189440 G A PPM1K Missense_Mutation p.P252S 0.51 tolerated(0.19) benign(0.186) TCGA-06-5416-01 4 89198395 89198395 C T PPM1K Missense_Mutation p.M147I 0.29 tolerated(0.14) benign(0) TCGA-06-5416-01 4 89199597 89199597 A G PPM1K Missense_Mutation p.C47R 0.44 tolerated(0.66) benign(0.013) TCGA-06-5416-01 4 89306690 89306690 T G HERC6 Silent p.V133V 0.33 TCGA-06-5416-01 4 89319281 89319281 G T HERC6 Intron 0.32 TCGA-06-5416-01 4 89363508 89363508 C A HERC6 Missense_Mutation p.L989I 0.40 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 4 89407314 89407314 G A HERC5 Missense_Mutation p.E596K 0.27 deleterious(0.02) benign(0.408) TCGA-06-5416-01 4 89410359 89410359 G A HERC5 Missense_Mutation p.E669K 0.32 tolerated(0.8) benign(0.11) TCGA-06-5416-01 4 89415355 89415355 C A HERC5 Missense_Mutation p.L773I 0.20 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 4 89442777 89442777 A G PIGY Missense_Mutation p.V55A 0.19 deleterious(0.01) possibly_damaging(0.553) TCGA-06-5416-01 4 89574093 89574093 C A HERC3 Silent p.A179A 0.33 TCGA-06-5416-01 4 89589105 89589105 A C HERC3 Missense_Mutation p.E502D 0.37 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 4 89653251 89653251 G A FAM13A Silent p.F915F 0.51 TCGA-06-5416-01 4 89668840 89668840 G A FAM13A Missense_Mutation p.S775F 0.10 tolerated(0.16) possibly_damaging(0.602) TCGA-06-5416-01 4 89827540 89827540 G T FAM13A Missense_Mutation p.P278Q 0.23 tolerated(0.15) benign(0.054) TCGA-06-5416-01 4 90034425 90034425 G A TIGD2 Silent p.T100T 0.39 TCGA-06-5416-01 4 90034674 90034674 G A TIGD2 Nonsense_Mutation p.W183* 0.17 TCGA-06-5416-01 4 90035564 90035564 C T TIGD2 Missense_Mutation p.A480V 0.32 tolerated(0.31) benign(0.035) TCGA-06-5416-01 4 90170510 90170510 G A GPRIN3 Missense_Mutation p.S251F 0.24 tolerated(0.57) benign(0.008) TCGA-06-5416-01 4 90171096 90171096 G T GPRIN3 Missense_Mutation p.L56I 0.23 deleterious(0.03) benign(0.348) TCGA-06-5416-01 4 90856566 90856566 G A MMRN1 Missense_Mutation p.V579I 0.24 tolerated(1) benign(0) TCGA-06-5416-01 4 90874669 90874669 A C MMRN1 3'UTR 0.22 TCGA-06-5416-01 4 91321281 91321281 G A CCSER1 Splice_Site p.X535_splice 0.09 TCGA-06-5416-01 4 91389469 91389469 A C CCSER1 Missense_Mutation p.K563T 0.56 deleterious(0.04) benign(0.178) TCGA-06-5416-01 4 94750541 94750541 G T ATOH1 Missense_Mutation p.G155V 0.24 tolerated(0.12) probably_damaging(0.998) TCGA-06-5416-01 4 94750697 94750697 A G ATOH1 Missense_Mutation p.Y207C 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 4 95170889 95170889 C T SMARCAD1 Missense_Mutation p.P264S 0.07 tolerated(0.06) possibly_damaging(0.894) TCGA-06-5416-01 4 95199882 95199882 T C SMARCAD1 Missense_Mutation p.L765S 0.10 tolerated(0.76) benign(0.012) TCGA-06-5416-01 4 95201808 95201808 C T SMARCAD1 Silent p.F830F 0.22 TCGA-06-5416-01 4 95223390 95223390 C A HPGDS Missense_Mutation p.Q114H 0.30 deleterious(0.03) benign(0.006) TCGA-06-5416-01 4 954381 954381 C T DGKQ 3'UTR 0.38 TCGA-06-5416-01 4 95507576 95507576 G A PDLIM5 Missense_Mutation p.D198N 0.26 deleterious(0.01) benign(0.422) TCGA-06-5416-01 4 95561565 95561565 G A PDLIM5 Missense_Mutation p.R445Q 0.36 deleterious(0) probably_damaging(0.946) TCGA-06-5416-01 4 96036936 96036936 G T BMPR1B Missense_Mutation p.R146I 0.12 tolerated(0.19) benign(0.126) TCGA-06-5416-01 4 96127845 96127845 G A UNC5C Silent p.C612C 0.19 TCGA-06-5416-01 4 96762088 96762088 G T PDHA2 Missense_Mutation p.A263S 0.09 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 4 9783904 9783904 C T DRD5 Missense_Mutation p.A84V 0.26 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 4 983411 983411 C T SLC26A1 Missense_Mutation p.R439Q 0.33 tolerated(0.16) possibly_damaging(0.738) TCGA-06-5416-01 4 99027163 99027163 T G STPG2 Missense_Mutation p.N185H 0.28 tolerated(0.06) possibly_damaging(0.839) TCGA-06-5416-01 4 99325722 99325722 T G RAP1GDS1 Missense_Mutation p.I245M 0.21 deleterious(0) benign(0.185) TCGA-06-5416-01 4 99808283 99808283 T C EIF4E Missense_Mutation p.T116A 0.44 deleterious(0.01) benign(0.157) TCGA-06-5416-01 4 99809044 99809044 A C EIF4E Missense_Mutation p.F94C 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 4 9982356 9982356 C T SLC2A9 Missense_Mutation p.A181T 0.24 tolerated(0.07) benign(0.127) TCGA-06-5416-01 5 101583110 101583110 C A SLCO4C1 Nonsense_Mutation p.E553* 0.51 TCGA-06-5416-01 5 101599467 101599467 A G SLCO4C1 Missense_Mutation p.S274P 0.52 deleterious(0.01) probably_damaging(0.99) TCGA-06-5416-01 5 101627150 101627150 C T SLCO4C1 Silent p.P172P 0.28 TCGA-06-5416-01 5 101726693 101726693 C A SLCO6A1 Missense_Mutation p.R624I 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 102423754 102423754 C T GIN1 Missense_Mutation p.D473N 0.14 tolerated_low_confidence(0.2) benign(0.004) TCGA-06-5416-01 5 102503000 102503000 C T PPIP5K2 Nonsense_Mutation p.R680* 0.17 TCGA-06-5416-01 5 10264826 10264826 T C CCT5 Silent p.L519L 0.24 TCGA-06-5416-01 5 1034387 1034387 G A NKD2 Missense_Mutation p.R123H 0.15 tolerated(0.05) benign(0.035) TCGA-06-5416-01 5 1060508 1060508 G A SLC12A7 Missense_Mutation p.S933L 0.16 deleterious(0.02) possibly_damaging(0.734) TCGA-06-5416-01 5 1064307 1064307 G A SLC12A7 Missense_Mutation p.S833L 0.13 tolerated(1) benign(0) TCGA-06-5416-01 5 1081838 1081838 G A SLC12A7 Missense_Mutation p.A384V 0.26 tolerated(0.26) benign(0.001) TCGA-06-5416-01 5 1085412 1085412 G A SLC12A7 Silent p.V284V 0.26 TCGA-06-5416-01 5 108714531 108714531 A G PJA2 Silent p.V219V 0.21 TCGA-06-5416-01 5 109110515 109110515 G A MAN2A1 Missense_Mutation p.R408Q 0.31 deleterious(0) possibly_damaging(0.883) TCGA-06-5416-01 5 109155507 109155507 G A MAN2A1 Silent p.K749K 0.15 TCGA-06-5416-01 5 110097045 110097045 C T SLC25A46 Missense_Mutation p.L274F 0.51 tolerated(0.11) benign(0.035) TCGA-06-5416-01 5 110439521 110439521 T G WDR36 Missense_Mutation p.S268A 0.17 tolerated(0.05) benign(0.387) TCGA-06-5416-01 5 110443001 110443001 C T WDR36 Missense_Mutation p.R453C 0.33 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 5 110459556 110459556 C A WDR36 Missense_Mutation p.F790L 0.58 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 5 111066616 111066616 G A NREP 3'UTR 0.32 TCGA-06-5416-01 5 111497448 111497448 C A EPB41L4A 3'Flank 0.18 TCGA-06-5416-01 5 111570385 111570385 T G EPB41L4A Missense_Mutation p.T345P 0.04 tolerated(0.28) benign(0.049) TCGA-06-5416-01 5 112102939 112102939 T C APC Missense_Mutation p.S92P 0.59 benign(0.106) TCGA-06-5416-01 5 112154825 112154825 G T APC Missense_Mutation p.D366Y 0.17 possibly_damaging(0.502) TCGA-06-5416-01 5 112174008 112174008 C A APC Missense_Mutation p.S906Y 0.49 benign(0.318) TCGA-06-5416-01 5 112175686 112175686 T C APC Silent p.S1465S 0.18 TCGA-06-5416-01 5 112179567 112179567 G A APC Missense_Mutation p.R2759H 0.18 probably_damaging(1) TCGA-06-5416-01 5 112203282 112203282 G T SRP19 3'UTR 0.27 TCGA-06-5416-01 5 112227434 112227434 G A ZRSR1 Missense_Mutation p.R33Q 0.20 deleterious(0) benign(0.238) TCGA-06-5416-01 5 112228281 112228281 G A ZRSR1 Silent p.A315A 0.36 TCGA-06-5416-01 5 112256900 112256900 G T REEP5 Missense_Mutation p.L58I 0.21 tolerated(0.06) possibly_damaging(0.479) TCGA-06-5416-01 5 112336925 112336925 G A DCP2 Missense_Mutation p.E193K 0.13 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 112346452 112346452 G A DCP2 Splice_Site p.X350_splice 0.16 TCGA-06-5416-01 5 112349205 112349205 T C DCP2 3'UTR 0.53 TCGA-06-5416-01 5 112479012 112479012 G A MCC Nonsense_Mutation p.R263* 0.39 TCGA-06-5416-01 5 112769521 112769521 G A TSSK1B Missense_Mutation p.S339L 0.32 tolerated_low_confidence(0.37) benign(0.002) TCGA-06-5416-01 5 112769889 112769889 G A TSSK1B Silent p.Y216Y 0.15 TCGA-06-5416-01 5 112901606 112901606 G A YTHDC2 Missense_Mutation p.R911Q 0.49 deleterious(0.01) benign(0.222) TCGA-06-5416-01 5 112917117 112917117 G A YTHDC2 Missense_Mutation p.A1120T 0.16 deleterious(0.01) possibly_damaging(0.88) TCGA-06-5416-01 5 112920091 112920091 G A YTHDC2 Missense_Mutation p.R1247Q 0.18 tolerated(0.34) benign(0.042) TCGA-06-5416-01 5 112927787 112927787 G A YTHDC2 Missense_Mutation p.R1375Q 0.22 tolerated(0.3) benign(0.007) TCGA-06-5416-01 5 113740341 113740341 C T KCNN2 Silent p.F263F 0.11 TCGA-06-5416-01 5 113831808 113831808 C T KCNN2 Missense_Mutation p.R557W 0.17 deleterious_low_confidence(0.01) unknown(0) TCGA-06-5416-01 5 114462244 114462244 C A TRIM36 Nonsense_Mutation p.E715* 0.50 TCGA-06-5416-01 5 114477072 114477072 C T TRIM36 Splice_Site p.X258_splice 0.29 TCGA-06-5416-01 5 114506894 114506894 C T TRIM36 Intron 0.17 TCGA-06-5416-01 5 114513372 114513372 C T TRIM36 Intron 0.40 TCGA-06-5416-01 5 114548001 114548001 C A PGGT1B 3'UTR 0.30 TCGA-06-5416-01 5 114606970 114606970 C A CCDC112 Missense_Mutation p.K424N 0.35 deleterious(0.01) possibly_damaging(0.524) TCGA-06-5416-01 5 114620519 114620519 T A CCDC112 Silent p.A68A 0.19 TCGA-06-5416-01 5 114860257 114860257 G A FEM1C Silent p.I534I 0.35 TCGA-06-5416-01 5 114860523 114860523 A G FEM1C Silent p.L446L 0.56 TCGA-06-5416-01 5 114879002 114879002 T C FEM1C Silent p.Q63Q 0.19 TCGA-06-5416-01 5 115298953 115298953 G T AQPEP Missense_Mutation p.K213N 0.35 tolerated(0.34) benign(0) TCGA-06-5416-01 5 115327934 115327934 C A AQPEP Missense_Mutation p.T407N 0.31 tolerated(0.33) possibly_damaging(0.616) TCGA-06-5416-01 5 115336133 115336133 G A AQPEP Missense_Mutation p.A507T 0.17 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 5 115350968 115350968 G T AQPEP Missense_Mutation p.D824Y 0.06 tolerated(0.06) benign(0.007) TCGA-06-5416-01 5 118507530 118507530 C A DMXL1 Missense_Mutation p.L2183I 0.35 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 5 118513824 118513824 T C DMXL1 Silent p.S2340S 0.17 TCGA-06-5416-01 5 118728656 118728656 G A TNFAIP8 Silent p.R59R 0.12 TCGA-06-5416-01 5 120022099 120022099 C T PRR16 Nonsense_Mutation p.R181* 0.15 TCGA-06-5416-01 5 121187791 121187791 C A FTMT Missense_Mutation p.P45T 0.29 deleterious_low_confidence(0.02) benign(0.205) TCGA-06-5416-01 5 121355817 121355817 T C SRFBP1 Silent p.N129N 0.47 TCGA-06-5416-01 5 121362771 121362771 C T SRFBP1 Nonsense_Mutation p.Q414* 0.57 TCGA-06-5416-01 5 121780374 121780374 G T SNCAIP Missense_Mutation p.E513D 0.18 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 5 121780416 121780416 G A SNCAIP Silent p.K527K 0.06 TCGA-06-5416-01 5 121786972 121786972 G T SNCAIP Missense_Mutation p.Q810H 0.35 deleterious(0) probably_damaging(0.976) TCGA-06-5416-01 5 121787135 121787135 C T SNCAIP Nonsense_Mutation p.R865* 0.19 TCGA-06-5416-01 5 121799238 121799238 G T SNCAIP 3'UTR 0.15 TCGA-06-5416-01 5 122163082 122163082 G A SNX2 Silent p.A455A 0.28 TCGA-06-5416-01 5 122343481 122343481 C T SNX24 3'UTR 0.38 TCGA-06-5416-01 5 123976976 123976976 C T ZNF608 Silent p.P1473P 0.50 TCGA-06-5416-01 5 123982529 123982529 G A ZNF608 Missense_Mutation p.S1183L 0.18 tolerated(0.08) probably_damaging(0.994) TCGA-06-5416-01 5 123982628 123982628 G A ZNF608 Missense_Mutation p.S1150L 0.21 tolerated(0.07) possibly_damaging(0.57) TCGA-06-5416-01 5 123983951 123983951 T G ZNF608 Missense_Mutation p.K709T 0.17 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 5 1240724 1240724 C T SLC6A18 Silent p.F308F 0.24 TCGA-06-5416-01 5 1242844 1242844 G A SLC6A18 Missense_Mutation p.D333N 0.29 tolerated(0.12) benign(0.007) TCGA-06-5416-01 5 125820109 125820109 A C GRAMD3 Missense_Mutation p.E303A 0.19 tolerated(0.14) benign(0.206) TCGA-06-5416-01 5 125939420 125939420 G A PHAX Silent p.Q85Q 0.37 TCGA-06-5416-01 5 125939661 125939661 G T PHAX Nonsense_Mutation p.E166* 0.35 TCGA-06-5416-01 5 125944075 125944075 G T PHAX Missense_Mutation p.D244Y 0.29 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 5 125971873 125971873 G A C5orf48 Silent p.S115S 0.36 TCGA-06-5416-01 5 126156777 126156777 G T LMNB1 Nonsense_Mutation p.E446* 0.55 TCGA-06-5416-01 5 126250574 126250574 C T MARCH3 Intron 0.19 TCGA-06-5416-01 5 126250809 126250809 G A MARCH3 Missense_Mutation p.P69L 0.38 deleterious(0.01) probably_damaging(0.98) TCGA-06-5416-01 5 1264641 1264641 G A TERT Silent p.F907F 0.15 TCGA-06-5416-01 5 1264696 1264696 C T TERT Missense_Mutation p.R889Q 0.22 tolerated(0.53) benign(0.022) TCGA-06-5416-01 5 126758398 126758398 G A MEGF10 Missense_Mutation p.D543N 0.11 deleterious(0) possibly_damaging(0.726) TCGA-06-5416-01 5 126774161 126774161 G A MEGF10 Missense_Mutation p.C712Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 126778758 126778758 G A MEGF10 Missense_Mutation p.D811N 0.46 tolerated(0.05) probably_damaging(1) TCGA-06-5416-01 5 127474331 127474331 A C SLC12A2 Missense_Mutation p.E484A 0.11 tolerated(0.48) benign(0.077) TCGA-06-5416-01 5 127510309 127510309 C T SLC12A2 Silent p.S960S 0.16 TCGA-06-5416-01 5 127597539 127597539 G A FBN2 Silent p.V2751V 0.38 TCGA-06-5416-01 5 127613609 127613609 A C FBN2 Silent p.V2478V 0.23 TCGA-06-5416-01 5 127674686 127674686 G T FBN2 Missense_Mutation p.S1137R 0.18 deleterious(0.02) possibly_damaging(0.599) TCGA-06-5416-01 5 127710327 127710327 A G FBN2 Missense_Mutation p.C697R 0.10 deleterious(0) probably_damaging(0.97) TCGA-06-5416-01 5 127863596 127863596 C A FBN2 Missense_Mutation p.Q167H 0.27 tolerated(0.07) benign(0.216) TCGA-06-5416-01 5 1282601 1282601 T C TERT Missense_Mutation p.N571S 0.22 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 5 128302291 128302291 G T SLC27A6 Missense_Mutation p.R154I 0.14 deleterious(0.03) benign(0.09) TCGA-06-5416-01 5 1294345 1294345 G A TERT Missense_Mutation p.P219L 0.35 tolerated(0.34) benign(0.017) TCGA-06-5416-01 5 130495281 130495281 A G HINT1 Silent p.V80V 0.15 TCGA-06-5416-01 5 130535316 130535316 C A LYRM7 3'UTR 0.35 TCGA-06-5416-01 5 130766624 130766624 C T CTC-432M15.3 Missense_Mutation p.G1515S 0.18 tolerated_low_confidence(0.89) benign(0.001) TCGA-06-5416-01 5 130769266 130769266 G C RAPGEF6 Missense_Mutation p.S1285R 0.16 tolerated_low_confidence(0.08) probably_damaging(0.995) TCGA-06-5416-01 5 131534046 131534046 C T P4HA2 Intron 0.39 TCGA-06-5416-01 5 131544933 131544933 T G P4HA2 Missense_Mutation p.E267D 0.16 tolerated(0.47) benign(0.001) TCGA-06-5416-01 5 131546192 131546192 C A P4HA2 Missense_Mutation p.S165I 0.17 deleterious(0) possibly_damaging(0.517) TCGA-06-5416-01 5 131647839 131647839 T G SLC22A4 Intron 0.27 TCGA-06-5416-01 5 131679634 131679634 A C SLC22A4 3'UTR 0.43 TCGA-06-5416-01 5 131822058 131822058 C T IRF1 Silent p.S184S 0.46 TCGA-06-5416-01 5 131877429 131877429 C T IL5 3'UTR 0.15 TCGA-06-5416-01 5 131924539 131924539 A C RAD50 Missense_Mutation p.Q404H 0.18 tolerated(0.2) benign(0.396) TCGA-06-5416-01 5 131931457 131931457 A C RAD50 Missense_Mutation p.K721T 0.42 deleterious(0.01) benign(0.064) TCGA-06-5416-01 5 132018242 132018242 C T IL4 Missense_Mutation p.T142M 0.39 tolerated(0.2) benign(0.019) TCGA-06-5416-01 5 132094511 132094511 C T SEPT8 Intron 0.51 TCGA-06-5416-01 5 132099560 132099560 G A SEPT8 Silent p.I124I 0.36 TCGA-06-5416-01 5 132159178 132159178 C T SHROOM1 Missense_Mutation p.D664N 0.29 tolerated(0.17) benign(0.015) TCGA-06-5416-01 5 132197352 132197352 T C GDF9 Missense_Mutation p.I432V 0.53 tolerated(0.1) benign(0.052) TCGA-06-5416-01 5 132199896 132199896 G T GDF9 Silent p.L110L 0.37 TCGA-06-5416-01 5 132412578 132412578 G A HSPA4 Missense_Mutation p.G299E 0.31 deleterious(0) probably_damaging(0.938) TCGA-06-5416-01 5 132537693 132537693 G A FSTL4 Silent p.I586I 0.16 TCGA-06-5416-01 5 133292553 133292553 A C C5orf15 Missense_Mutation p.F265L 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 133474672 133474672 C A TCF7 Missense_Mutation p.S193Y 0.47 deleterious(0.01) probably_damaging(0.983) TCGA-06-5416-01 5 133493539 133493539 C T SKP1 Intron 0.48 TCGA-06-5416-01 5 133536060 133536060 G A PPP2CA Missense_Mutation p.T235M 0.42 tolerated(0.07) possibly_damaging(0.84) TCGA-06-5416-01 5 133702080 133702080 T A CDKL3 Missense_Mutation p.K45N 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 133873771 133873771 G A JADE2 Missense_Mutation p.E51K 0.37 deleterious(0.01) probably_damaging(0.961) TCGA-06-5416-01 5 1339049 1339049 C T CLPTM1L Silent p.A175A 0.26 TCGA-06-5416-01 5 133942738 133942738 C T SAR1B Missense_Mutation p.E167K 0.53 tolerated(0.13) benign(0.216) TCGA-06-5416-01 5 134044512 134044512 G T SEC24A Missense_Mutation p.Q887H 0.34 tolerated(0.15) benign(0.013) TCGA-06-5416-01 5 134077026 134077026 G T CAMLG Missense_Mutation p.R149L 0.17 deleterious_low_confidence(0.01) benign(0.087) TCGA-06-5416-01 5 134102648 134102648 G T DDX46 Missense_Mutation p.R83I 0.15 deleterious(0.05) unknown(0) TCGA-06-5416-01 5 134154667 134154667 G A DDX46 Missense_Mutation p.E983K 0.39 deleterious(0) probably_damaging(0.963) TCGA-06-5416-01 5 134223565 134223565 C A TXNDC15 Missense_Mutation p.S95Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 134305763 134305763 G A CATSPER3 Missense_Mutation p.R78H 0.42 tolerated(0.27) benign(0.003) TCGA-06-5416-01 5 134343828 134343828 C T CATSPER3 Missense_Mutation p.T225M 0.15 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 134782297 134782297 C T C5orf20 Missense_Mutation p.E168K 0.12 tolerated_low_confidence(0.73) benign(0) TCGA-06-5416-01 5 135277349 135277349 C T FBXL21 RNA 0.14 TCGA-06-5416-01 5 135287185 135287185 G A LECT2 Intron 0.29 TCGA-06-5416-01 5 135287199 135287199 C T LECT2 Intron 0.41 TCGA-06-5416-01 5 135416228 135416228 G T VTRNA2-1 RNA 0.11 TCGA-06-5416-01 5 135610444 135610444 C T TRPC7 Missense_Mutation p.A349T 0.53 tolerated(0.34) benign(0.27) TCGA-06-5416-01 5 135692631 135692631 C T TRPC7 Missense_Mutation p.D149N 0.23 deleterious(0.02) probably_damaging(0.984) TCGA-06-5416-01 5 135692635 135692635 G A TRPC7 Silent p.R147R 0.23 TCGA-06-5416-01 5 13692193 13692193 C T DNAH5 Missense_Mutation p.R4592Q 0.43 possibly_damaging(0.553) TCGA-06-5416-01 5 136963994 136963994 C T KLHL3 Missense_Mutation p.R528H 0.22 deleterious(0.02) probably_damaging(0.961) TCGA-06-5416-01 5 137088682 137088682 A G HNRNPA0 3'UTR 0.38 TCGA-06-5416-01 5 137235332 137235332 C A PKD2L2 Missense_Mutation p.L218I 0.13 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 137259122 137259122 C T PKD2L2 Missense_Mutation p.A488V 0.16 deleterious(0) probably_damaging(0.953) TCGA-06-5416-01 5 137278849 137278849 T G FAM13B Missense_Mutation p.E777D 0.05 deleterious(0.02) probably_damaging(0.992) TCGA-06-5416-01 5 137346782 137346782 G A FAM13B Missense_Mutation p.A202V 0.33 tolerated(0.13) benign(0.003) TCGA-06-5416-01 5 137424646 137424646 G T WNT8A Missense_Mutation p.S133I 0.06 deleterious(0) possibly_damaging(0.88) TCGA-06-5416-01 5 137426430 137426430 C A WNT8A Missense_Mutation p.L242I 0.52 tolerated(0.48) possibly_damaging(0.604) TCGA-06-5416-01 5 137464235 137464235 C T NME5 Silent p.R123R 0.21 TCGA-06-5416-01 5 137536801 137536801 C A CDC23 Nonsense_Mutation p.E217* 0.18 TCGA-06-5416-01 5 137661554 137661554 C A CDC25C Missense_Mutation p.G137C 0.18 deleterious(0.03) probably_damaging(0.975) TCGA-06-5416-01 5 137661584 137661584 G T CDC25C Missense_Mutation p.L127I 0.35 deleterious(0.02) benign(0.397) TCGA-06-5416-01 5 13770972 13770972 A T DNAH5 Missense_Mutation p.F3164Y 0.19 benign(0.418) TCGA-06-5416-01 5 137761226 137761226 G A KDM3B Missense_Mutation p.D1456N 0.19 tolerated(0.45) benign(0.059) TCGA-06-5416-01 5 137780194 137780194 C T REEP2 Silent p.F91F 0.15 TCGA-06-5416-01 5 137780499 137780499 G A REEP2 Silent p.R120R 0.11 TCGA-06-5416-01 5 137802903 137802903 C T EGR1 Silent p.Y255Y 0.52 TCGA-06-5416-01 5 137803152 137803152 C T EGR1 Silent p.Y338Y 0.33 TCGA-06-5416-01 5 137803362 137803362 C T EGR1 Silent p.S408S 0.36 TCGA-06-5416-01 5 13793692 13793692 C A DNAH5 Missense_Mutation p.R2719I 0.24 possibly_damaging(0.639) TCGA-06-5416-01 5 13830775 13830775 C T DNAH5 Missense_Mutation p.G1998R 0.45 probably_damaging(0.989) TCGA-06-5416-01 5 138362521 138362521 G A SIL1 Missense_Mutation p.A205V 0.17 tolerated(0.27) probably_damaging(0.999) TCGA-06-5416-01 5 13862727 13862727 C T DNAH5 Missense_Mutation p.D1576N 0.44 possibly_damaging(0.822) TCGA-06-5416-01 5 138651398 138651398 G A MATR3 Nonsense_Mutation p.W329* 0.35 TCGA-06-5416-01 5 138714367 138714367 G A SLC23A1 Silent p.I364I 0.45 TCGA-06-5416-01 5 138749814 138749814 C T DNAJC18 3'UTR 0.28 TCGA-06-5416-01 5 138764331 138764331 G A DNAJC18 Missense_Mutation p.S90F 0.49 deleterious(0) possibly_damaging(0.54) TCGA-06-5416-01 5 13876916 13876916 C A DNAH5 Missense_Mutation p.E1091D 0.26 benign(0.217) TCGA-06-5416-01 5 138857956 138857956 G A TMEM173 Missense_Mutation p.R220C 0.15 tolerated(0.11) benign(0.048) TCGA-06-5416-01 5 139189324 139189324 G A PSD2 Missense_Mutation p.R100K 0.14 deleterious_low_confidence(0.01) benign(0.205) TCGA-06-5416-01 5 139231380 139231380 C A NRG2 Missense_Mutation p.E527D 0.08 tolerated(0.25) benign(0.139) TCGA-06-5416-01 5 139494606 139494606 G T PURA Missense_Mutation p.K280N 0.17 tolerated(0.1) benign(0.313) TCGA-06-5416-01 5 139574198 139574198 G A CYSTM1 Missense_Mutation p.G50S 0.19 tolerated_low_confidence(0.09) unknown(0) TCGA-06-5416-01 5 139740477 139740477 G A SLC4A9 Missense_Mutation p.S128N 0.15 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 5 139742087 139742087 A C SLC4A9 Silent p.G283G 0.49 TCGA-06-5416-01 5 139862233 139862233 G T ANKHD1 Silent p.V617V 0.38 TCGA-06-5416-01 5 139889651 139889651 G A ANKHD1 Nonsense_Mutation p.W1330* 0.21 TCGA-06-5416-01 5 139907932 139907932 G A ANKHD1 Missense_Mutation p.A1801T 0.13 benign(0.029) TCGA-06-5416-01 5 139917073 139917073 T A ANKHD1 Missense_Mutation p.I2376N 0.35 probably_damaging(0.993) TCGA-06-5416-01 5 139919011 139919011 G T ANKHD1 Intron 0.18 TCGA-06-5416-01 5 139940018 139940018 G A APBB3 Silent p.G375G 0.21 TCGA-06-5416-01 5 139941645 139941645 G A APBB3 Intron 0.33 TCGA-06-5416-01 5 140023257 140023257 G A TMCO6 Silent p.E305E 0.40 TCGA-06-5416-01 5 140049313 140049313 G A WDR55 3'UTR 0.42 TCGA-06-5416-01 5 140085464 140085464 G A ZMAT2 3'UTR 0.15 TCGA-06-5416-01 5 140166104 140166104 G A PCDHA1 Missense_Mutation p.V77I 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.552) TCGA-06-5416-01 5 140166371 140166371 G A PCDHA1 Missense_Mutation p.A166T 0.20 deleterious_low_confidence(0.01) benign(0.25) TCGA-06-5416-01 5 140176405 140176405 G A PCDHA2 Missense_Mutation p.R619H 0.53 tolerated_low_confidence(0.11) benign(0.106) TCGA-06-5416-01 5 140182244 140182244 G A PCDHA3 Missense_Mutation p.A488T 0.45 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-06-5416-01 5 140183027 140183027 T C PCDHA3 Missense_Mutation p.S749P 0.20 deleterious_low_confidence(0.02) benign(0.199) TCGA-06-5416-01 5 140188060 140188060 G A PCDHA4 Missense_Mutation p.G430R 0.52 tolerated_low_confidence(0.07) benign(0.365) TCGA-06-5416-01 5 140188348 140188348 G A PCDHA4 Missense_Mutation p.E526K 0.19 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-06-5416-01 5 140188595 140188595 C T PCDHA4 Missense_Mutation p.S608L 0.18 tolerated_low_confidence(0.05) possibly_damaging(0.577) TCGA-06-5416-01 5 140188946 140188946 C T PCDHA4 Missense_Mutation p.A725V 0.18 tolerated_low_confidence(0.08) benign(0.015) TCGA-06-5416-01 5 140201828 140201828 G A PCDHA5 Silent p.A156A 0.20 TCGA-06-5416-01 5 140202273 140202273 G A PCDHA5 Missense_Mutation p.G305R 0.17 deleterious_low_confidence(0.03) possibly_damaging(0.769) TCGA-06-5416-01 5 140221253 140221253 T C PCDHA8 Missense_Mutation p.V116A 0.11 deleterious_low_confidence(0) probably_damaging(0.919) TCGA-06-5416-01 5 140222032 140222032 G A PCDHA8 Missense_Mutation p.D376N 0.16 deleterious_low_confidence(0.01) probably_damaging(0.918) TCGA-06-5416-01 5 140230000 140230000 G A PCDHA9 Silent p.T640T 0.13 TCGA-06-5416-01 5 140235933 140235933 G A PCDHA10 Silent p.E100E 0.36 TCGA-06-5416-01 5 140250622 140250622 G A PCDHA11 Missense_Mutation p.R645Q 0.41 deleterious_low_confidence(0.03) possibly_damaging(0.55) TCGA-06-5416-01 5 140256082 140256082 A G PCDHA12 Missense_Mutation p.D342G 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 5 140256182 140256182 G A PCDHA12 Silent p.S375S 0.20 TCGA-06-5416-01 5 140262116 140262116 C A PCDHA13 Missense_Mutation p.S88Y 0.20 deleterious_low_confidence(0) probably_damaging(0.965) TCGA-06-5416-01 5 140307405 140307405 A G PCDHAC1 Missense_Mutation p.I310V 0.23 tolerated(1) benign(0.037) TCGA-06-5416-01 5 140308872 140308872 C T PCDHAC1 Missense_Mutation p.R799W 0.20 tolerated(0.24) benign(0.004) TCGA-06-5416-01 5 1403104 1403104 G A SLC6A3 Missense_Mutation p.S567F 0.22 deleterious(0) probably_damaging(0.961) TCGA-06-5416-01 5 1403111 1403111 C T SLC6A3 Missense_Mutation p.A565T 0.45 tolerated(0.18) possibly_damaging(0.527) TCGA-06-5416-01 5 1403129 1403129 C T SLC6A3 Missense_Mutation p.A559T 0.45 tolerated(0.42) benign(0.009) TCGA-06-5416-01 5 140475658 140475658 C T PCDHB2 Silent p.F428F 0.32 TCGA-06-5416-01 5 140480456 140480456 T C PCDHB3 Missense_Mutation p.F75L 0.21 tolerated_low_confidence(1) benign(0.011) TCGA-06-5416-01 5 140482555 140482555 C T PCDHB3 Silent p.F774F 0.07 TCGA-06-5416-01 5 140482617 140482617 T C PCDHB3 Missense_Mutation p.F795S 0.30 deleterious_low_confidence(0) benign(0) TCGA-06-5416-01 5 140503701 140503701 C T PCDHB4 Silent p.F707F 0.18 TCGA-06-5416-01 5 140515869 140515869 G A PCDHB5 Missense_Mutation p.D285N 0.20 tolerated_low_confidence(0.22) benign(0.005) TCGA-06-5416-01 5 140516137 140516137 C T PCDHB5 Missense_Mutation p.S374F 0.16 deleterious_low_confidence(0) possibly_damaging(0.589) TCGA-06-5416-01 5 140516619 140516619 C T PCDHB5 Missense_Mutation p.R535C 0.35 deleterious_low_confidence(0.01) probably_damaging(0.949) TCGA-06-5416-01 5 140530834 140530834 C T PCDHB6 Silent p.V332V 0.37 TCGA-06-5416-01 5 140530881 140530881 C T PCDHB6 Missense_Mutation p.S348L 0.18 deleterious_low_confidence(0.01) benign(0.042) TCGA-06-5416-01 5 140531155 140531155 C A PCDHB6 Silent p.V439V 0.34 TCGA-06-5416-01 5 140531411 140531411 T G PCDHB6 Missense_Mutation p.F525V 0.47 deleterious(0) possibly_damaging(0.835) TCGA-06-5416-01 5 140531604 140531604 C T PCDHB6 Missense_Mutation p.A589V 0.16 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 5 140532095 140532095 C T PCDHB6 Silent p.L753L 0.41 TCGA-06-5416-01 5 140532317 140532317 C A PCDHB6 3'UTR 0.25 TCGA-06-5416-01 5 140537353 140537353 C T PCDHB17 3'UTR 0.40 TCGA-06-5416-01 5 140552950 140552950 C T PCDHB7 Silent p.F178F 0.15 TCGA-06-5416-01 5 140553388 140553388 C T PCDHB7 Silent p.G324G 0.18 TCGA-06-5416-01 5 140553431 140553431 G T PCDHB7 Missense_Mutation p.D339Y 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-06-5416-01 5 140553541 140553541 C T PCDHB7 Silent p.S375S 0.34 TCGA-06-5416-01 5 140553607 140553607 C T PCDHB7 Silent p.V397V 0.38 TCGA-06-5416-01 5 140559252 140559252 C T PCDHB8 Missense_Mutation p.A546V 0.20 tolerated_low_confidence(0.06) benign(0.144) TCGA-06-5416-01 5 140562663 140562663 C T PCDHB16 Missense_Mutation p.H177Y 0.47 tolerated_low_confidence(0.32) benign(0.004) TCGA-06-5416-01 5 140564456 140564456 C A PCDHB16 Missense_Mutation p.F774L 0.16 tolerated_low_confidence(1) benign(0.001) TCGA-06-5416-01 5 140572854 140572854 C T PCDHB10 Silent p.A243A 0.16 TCGA-06-5416-01 5 140573535 140573535 C T PCDHB10 Silent p.I470I 0.14 TCGA-06-5416-01 5 140573706 140573706 C T PCDHB10 Silent p.F527F 0.09 TCGA-06-5416-01 5 140574255 140574255 C T PCDHB10 Silent p.F710F 0.39 TCGA-06-5416-01 5 140579983 140579983 C A PCDHB11 Silent p.L212L 0.39 TCGA-06-5416-01 5 140589666 140589666 C T PCDHB12 Missense_Mutation p.S396L 0.30 deleterious_low_confidence(0) benign(0.344) TCGA-06-5416-01 5 140590251 140590251 C T PCDHB12 Missense_Mutation p.A591V 0.11 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-06-5416-01 5 140590500 140590500 C T PCDHB12 Missense_Mutation p.P674L 0.33 deleterious_low_confidence(0.01) benign(0.082) TCGA-06-5416-01 5 140594707 140594707 G T PCDHB13 Missense_Mutation p.V338L 0.38 deleterious_low_confidence(0) benign(0.29) TCGA-06-5416-01 5 140595075 140595075 C A PCDHB13 Silent p.V460V 0.15 TCGA-06-5416-01 5 140595107 140595107 G A PCDHB13 Missense_Mutation p.R471H 0.18 deleterious_low_confidence(0) benign(0.015) TCGA-06-5416-01 5 140603128 140603128 C A PCDHB14 Missense_Mutation p.F17L 0.53 tolerated_low_confidence(1) benign(0.002) TCGA-06-5416-01 5 140603303 140603303 C A PCDHB14 Missense_Mutation p.H76N 0.13 deleterious_low_confidence(0.02) benign(0.158) TCGA-06-5416-01 5 140604849 140604849 C T PCDHB14 Missense_Mutation p.A591V 0.23 deleterious_low_confidence(0) probably_damaging(0.94) TCGA-06-5416-01 5 140605201 140605201 C T PCDHB14 Silent p.F708F 0.49 TCGA-06-5416-01 5 140615399 140615399 G A PCDHB18 RNA 0.18 TCGA-06-5416-01 5 140616235 140616235 C T PCDHB18 RNA 0.17 TCGA-06-5416-01 5 140626217 140626217 C T PCDHB15 Silent p.P357P 0.21 TCGA-06-5416-01 5 140626954 140626954 C T PCDHB15 Missense_Mutation p.S603L 0.16 deleterious_low_confidence(0.01) probably_damaging(0.97) TCGA-06-5416-01 5 140698885 140698885 C A TAF7 Missense_Mutation p.D243Y 0.14 deleterious(0.04) probably_damaging(0.959) TCGA-06-5416-01 5 140699109 140699109 C T TAF7 Missense_Mutation p.R168Q 0.13 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 5 140710895 140710895 C A PCDHGA1 Missense_Mutation p.S215Y 0.19 tolerated_low_confidence(1) possibly_damaging(0.703) TCGA-06-5416-01 5 140711309 140711309 C T PCDHGA1 Missense_Mutation p.T353I 0.16 tolerated_low_confidence(0.14) benign(0.159) TCGA-06-5416-01 5 140725334 140725334 G A PCDHGA3 Silent p.A578A 0.19 TCGA-06-5416-01 5 140725930 140725930 A G PCDHGA3 Missense_Mutation p.D777G 0.19 deleterious_low_confidence(0) probably_damaging(0.975) TCGA-06-5416-01 5 140730487 140730487 C T PCDHGB1 Silent p.S220S 0.32 TCGA-06-5416-01 5 140732083 140732083 T G PCDHGB1 Missense_Mutation p.I752M 0.16 deleterious(0.03) benign(0.372) TCGA-06-5416-01 5 140732222 140732222 T G PCDHGB1 Missense_Mutation p.S799A 0.21 tolerated(0.77) benign(0.002) TCGA-06-5416-01 5 140736675 140736675 C T PCDHGA4 Silent p.D636D 0.11 TCGA-06-5416-01 5 140736677 140736677 C T PCDHGA4 Missense_Mutation p.A637V 0.33 deleterious_low_confidence(0.02) benign(0.382) TCGA-06-5416-01 5 140750025 140750025 C A PCDHGB3 Missense_Mutation p.L22I 0.17 deleterious(0.03) possibly_damaging(0.688) TCGA-06-5416-01 5 140750297 140750297 G A PCDHGB3 Silent p.K112K 0.39 TCGA-06-5416-01 5 140751679 140751679 C T PCDHGB3 Missense_Mutation p.A573V 0.18 deleterious(0.01) possibly_damaging(0.81) TCGA-06-5416-01 5 140754038 140754038 A G PCDHGA6 Missense_Mutation p.T130A 0.17 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 5 140755001 140755001 A G PCDHGA6 Missense_Mutation p.T451A 0.17 tolerated_low_confidence(1) benign(0.002) TCGA-06-5416-01 5 140755270 140755270 G A PCDHGA6 Silent p.P540P 0.22 TCGA-06-5416-01 5 140755533 140755533 C T PCDHGA6 Missense_Mutation p.T628M 0.42 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-06-5416-01 5 140762680 140762680 A G PCDHGA7 Missense_Mutation p.T72A 0.34 tolerated_low_confidence(0.07) benign(0.097) TCGA-06-5416-01 5 140763542 140763542 A G PCDHGA7 Missense_Mutation p.D359G 0.15 deleterious_low_confidence(0.04) benign(0.029) TCGA-06-5416-01 5 140768474 140768474 C T PCDHGB4 Silent p.N341N 0.24 TCGA-06-5416-01 5 140768713 140768713 C T PCDHGB4 Missense_Mutation p.T421M 0.56 tolerated(0.07) possibly_damaging(0.473) TCGA-06-5416-01 5 140772524 140772524 C A PCDHGA8 Silent p.I48I 0.18 TCGA-06-5416-01 5 140773044 140773044 C T PCDHGA8 Missense_Mutation p.R222C 0.41 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-06-5416-01 5 140773624 140773624 T C PCDHGA8 Missense_Mutation p.V415A 0.46 deleterious_low_confidence(0.05) benign(0.064) TCGA-06-5416-01 5 140774710 140774710 A G PCDHGA8 Missense_Mutation p.D777G 0.16 deleterious_low_confidence(0) benign(0.398) TCGA-06-5416-01 5 140787976 140787976 C T PCDHGB6 Silent p.S69S 0.29 TCGA-06-5416-01 5 140789915 140789915 C T PCDHGB6 Nonsense_Mutation p.R716* 0.53 TCGA-06-5416-01 5 140794351 140794351 A G PCDHGA10 Missense_Mutation p.T537A 0.15 deleterious_low_confidence(0.03) benign(0.059) TCGA-06-5416-01 5 140794666 140794666 C T PCDHGA10 Missense_Mutation p.L642F 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.5) TCGA-06-5416-01 5 140798942 140798942 T C PCDHGB7 Missense_Mutation p.S506P 0.20 deleterious(0) probably_damaging(0.962) TCGA-06-5416-01 5 140799089 140799089 C T PCDHGB7 Missense_Mutation p.R555C 0.60 deleterious(0.02) benign(0.015) TCGA-06-5416-01 5 140799687 140799687 T A PCDHGB7 Missense_Mutation p.F754Y 0.35 tolerated(0.17) benign(0.034) TCGA-06-5416-01 5 140799735 140799735 C A PCDHGB7 Missense_Mutation p.S770Y 0.38 tolerated(1) benign(0.406) TCGA-06-5416-01 5 140801482 140801482 C T PCDHGA11 Missense_Mutation p.R230C 0.40 deleterious_low_confidence(0.03) benign(0.042) TCGA-06-5416-01 5 140802106 140802106 C A PCDHGA11 Missense_Mutation p.H438N 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.479) TCGA-06-5416-01 5 140807340 140807340 C T PCDHGB6 Intron 0.44 TCGA-06-5416-01 5 140807515 140807515 A G PCDHGB6 Intron 0.26 TCGA-06-5416-01 5 140807638 140807638 C T PCDHGB6 Intron 0.46 TCGA-06-5416-01 5 140856087 140856087 T C PCDHGC3 Missense_Mutation p.F135S 0.60 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 140865025 140865025 G A PCDHGC4 Silent p.L95L 0.15 TCGA-06-5416-01 5 140903769 140903769 C T DIAPH1 Missense_Mutation p.S1201N 0.55 benign(0.193) TCGA-06-5416-01 5 140957060 140957060 C T DIAPH1 Missense_Mutation p.R421Q 0.42 unknown(0) TCGA-06-5416-01 5 1409928 1409928 C T SLC6A3 Missense_Mutation p.D436N 0.40 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 5 141007458 141007458 A G HDAC3 Splice_Site p.X277_splice 0.19 TCGA-06-5416-01 5 141022586 141022586 C T FCHSD1 Missense_Mutation p.A645T 0.64 tolerated(0.47) benign(0.009) TCGA-06-5416-01 5 141026751 141026751 A G FCHSD1 Missense_Mutation p.V292A 0.44 tolerated(0.38) benign(0.001) TCGA-06-5416-01 5 141029925 141029925 C T FCHSD1 Splice_Site p.X55_splice 0.19 TCGA-06-5416-01 5 141036132 141036132 C T ARAP3 Missense_Mutation p.R1243H 0.55 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 5 141236904 141236904 G A PCDH1 Nonsense_Mutation p.R1078* 0.35 TCGA-06-5416-01 5 141336609 141336609 C A PCDH12 Missense_Mutation p.D270Y 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 141524141 141524141 C A NDFIP1 Missense_Mutation p.L190I 0.14 deleterious(0.04) possibly_damaging(0.669) TCGA-06-5416-01 5 142393656 142393656 G A ARHGAP26 Silent p.S373S 0.54 TCGA-06-5416-01 5 142689725 142689725 G A NR3C1 Nonsense_Mutation p.R470* 0.19 TCGA-06-5416-01 5 1432744 1432744 G A SLC6A3 Missense_Mutation p.A163V 0.45 deleterious(0.01) possibly_damaging(0.763) TCGA-06-5416-01 5 14336754 14336754 G A TRIO Missense_Mutation p.R655Q 0.19 benign(0.011) TCGA-06-5416-01 5 143586764 143586764 T C KCTD16 Missense_Mutation p.W163R 0.38 tolerated(0.22) benign(0.123) TCGA-06-5416-01 5 14381265 14381265 C T TRIO Silent p.G1158G 0.35 TCGA-06-5416-01 5 14394221 14394221 G T TRIO Missense_Mutation p.K1431N 0.14 probably_damaging(1) TCGA-06-5416-01 5 14406000 14406000 G A TRIO Missense_Mutation p.R1587H 0.22 possibly_damaging(0.831) TCGA-06-5416-01 5 145144506 145144506 A G PRELID2 Nonstop_Mutation p.*190Qext*38 0.18 TCGA-06-5416-01 5 145252415 145252415 C T GRXCR2 Silent p.G39G 0.47 TCGA-06-5416-01 5 145379813 145379813 C T SH3RF2 Missense_Mutation p.L191F 0.21 deleterious(0.03) probably_damaging(0.993) TCGA-06-5416-01 5 145483916 145483916 C A PLAC8L1 5'UTR 0.35 TCGA-06-5416-01 5 145547699 145547699 C A LARS Nonsense_Mutation p.G142* 0.37 TCGA-06-5416-01 5 145643075 145643075 T G RBM27 Missense_Mutation p.S738A 0.29 tolerated(0.6) benign(0) TCGA-06-5416-01 5 145643114 145643114 C T RBM27 Missense_Mutation p.R751C 0.33 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 5 145665548 145665548 C T RBM27 Silent p.D1046D 0.49 TCGA-06-5416-01 5 145719466 145719466 T C POU4F3 Missense_Mutation p.M159T 0.18 tolerated(0.43) benign(0.024) TCGA-06-5416-01 5 145878230 145878230 C T TCERG1 Missense_Mutation p.S788L 0.32 tolerated(0.06) unknown(0) TCGA-06-5416-01 5 145883504 145883504 C T TCERG1 Nonsense_Mutation p.R889* 0.18 TCGA-06-5416-01 5 145888720 145888720 G A TCERG1 Missense_Mutation p.E1003K 0.16 deleterious(0) unknown(0) TCGA-06-5416-01 5 14602293 14602293 C T FAM105A Missense_Mutation p.A117V 0.13 deleterious(0.04) benign(0.125) TCGA-06-5416-01 5 146030138 146030138 C T PPP2R2B Nonsense_Mutation p.W202* 0.44 TCGA-06-5416-01 5 146785275 146785275 A G DPYSL3 Missense_Mutation p.F351L 0.29 tolerated(0.5) probably_damaging(0.99) TCGA-06-5416-01 5 14690251 14690251 A C FAM105B Missense_Mutation p.K233T 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 14690269 14690269 G A FAM105B Missense_Mutation p.R239K 0.15 tolerated(0.38) benign(0.012) TCGA-06-5416-01 5 14690297 14690297 G T FAM105B Missense_Mutation p.E248D 0.18 tolerated(0.13) possibly_damaging(0.805) TCGA-06-5416-01 5 14693107 14693107 G A FAM105B Missense_Mutation p.D337N 0.14 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 147040819 147040819 G A JAKMIP2 Missense_Mutation p.R107C 0.36 deleterious(0) possibly_damaging(0.534) TCGA-06-5416-01 5 147051354 147051354 G A JAKMIP2 Nonsense_Mutation p.R6* 0.18 TCGA-06-5416-01 5 147470775 147470775 G A SPINK5 Missense_Mutation p.R217Q 0.31 deleterious(0.04) benign(0.077) TCGA-06-5416-01 5 147480054 147480054 G A SPINK5 Missense_Mutation p.G377E 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 147491423 147491423 C T SPINK5 Silent p.I595I 0.33 TCGA-06-5416-01 5 147499859 147499859 G A SPINK5 Missense_Mutation p.E815K 0.29 deleterious(0.04) possibly_damaging(0.767) TCGA-06-5416-01 5 147516644 147516644 G A SPINK5 3'UTR 0.21 TCGA-06-5416-01 5 147692063 147692063 G A SPINK7 Missense_Mutation p.G6D 0.34 tolerated(0.37) benign(0.36) TCGA-06-5416-01 5 147695233 147695233 G A SPINK7 Missense_Mutation p.D82N 0.39 tolerated(0.11) benign(0.005) TCGA-06-5416-01 5 147862692 147862692 G A HTR4 3'UTR 0.28 TCGA-06-5416-01 5 147889347 147889347 G A HTR4 Missense_Mutation p.R250C 0.37 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 5 148206993 148206993 C T ADRB2 Missense_Mutation p.A200V 0.51 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 5 1483591 1483591 G A LPCAT1 Silent p.I226I 0.12 TCGA-06-5416-01 5 148392196 148392196 C T SH3TC2 Missense_Mutation p.R1052Q 0.14 tolerated(0.07) possibly_damaging(0.545) TCGA-06-5416-01 5 148586647 148586647 C T ABLIM3 Silent p.C175C 0.18 TCGA-06-5416-01 5 148638018 148638018 C A ABLIM3 3'UTR 0.36 TCGA-06-5416-01 5 148742200 148742200 C T PCYOX1L Missense_Mutation p.A30V 0.16 deleterious(0) unknown(0) TCGA-06-5416-01 5 148747833 148747833 C A PCYOX1L Missense_Mutation p.F367L 0.21 tolerated(1) possibly_damaging(0.897) TCGA-06-5416-01 5 148753918 148753918 C A IL17B 3'UTR 0.24 TCGA-06-5416-01 5 148996200 148996200 C A ARHGEF37 Missense_Mutation p.L177M 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 149001489 149001489 C T ARHGEF37 Missense_Mutation p.S400L 0.56 deleterious(0) possibly_damaging(0.612) TCGA-06-5416-01 5 149210329 149210329 G A PPARGC1B Splice_Site p.X156_splice 0.20 TCGA-06-5416-01 5 149216066 149216066 G A PPARGC1B Missense_Mutation p.R683H 0.17 deleterious(0.03) benign(0.099) TCGA-06-5416-01 5 149263090 149263090 C T PDE6A Silent p.T679T 0.43 TCGA-06-5416-01 5 149264115 149264115 G A PDE6A Missense_Mutation p.R652C 0.50 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 5 149275967 149275967 C A PDE6A Missense_Mutation p.Q524H 0.21 deleterious(0.03) benign(0.135) TCGA-06-5416-01 5 149314276 149314276 C T PDE6A Silent p.E160E 0.39 TCGA-06-5416-01 5 149361278 149361278 C A SLC26A2 Missense_Mutation p.L708I 0.47 tolerated(0.09) benign(0.098) TCGA-06-5416-01 5 149361295 149361295 T C SLC26A2 Silent p.Y713Y 0.47 TCGA-06-5416-01 5 149374936 149374936 A G TIGD6 Missense_Mutation p.Y326H 0.29 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 5 149375054 149375054 G A TIGD6 Silent p.C286C 0.13 TCGA-06-5416-01 5 149450017 149450017 A G CSF1R Splice_Site p.X400_splice 0.62 TCGA-06-5416-01 5 149459843 149459843 C T CSF1R Missense_Mutation p.D122N 0.37 tolerated(0.19) possibly_damaging(0.517) TCGA-06-5416-01 5 149460515 149460515 C T CSF1R Missense_Mutation p.R41Q 0.25 tolerated(0.06) possibly_damaging(0.518) TCGA-06-5416-01 5 149495269 149495269 G A PDGFRB 3'UTR 0.32 TCGA-06-5416-01 5 149497322 149497322 C T PDGFRB Missense_Mutation p.R999Q 0.29 tolerated(0.54) benign(0.004) TCGA-06-5416-01 5 149509367 149509367 C T PDGFRB Missense_Mutation p.R511H 0.51 tolerated(0.4) benign(0.004) TCGA-06-5416-01 5 149676997 149676997 C T ARSI Missense_Mutation p.R497H 0.15 deleterious(0.04) benign(0.077) TCGA-06-5416-01 5 149677010 149677010 C T ARSI Missense_Mutation p.A493T 0.38 tolerated(0.18) benign(0.158) TCGA-06-5416-01 5 150050199 150050199 C T MYOZ3 Missense_Mutation p.A72V 0.20 tolerated(0.4) benign(0.014) TCGA-06-5416-01 5 150076159 150076159 G A RBM22 Nonsense_Mutation p.R161* 0.42 TCGA-06-5416-01 5 150175104 150175104 G T SMIM3 Missense_Mutation p.M34I 0.15 deleterious_low_confidence(0.01) benign(0.179) TCGA-06-5416-01 5 150275195 150275195 G A ZNF300 Missense_Mutation p.L552F 0.57 tolerated(0.28) probably_damaging(0.999) TCGA-06-5416-01 5 150275615 150275615 G T ZNF300 Missense_Mutation p.L412M 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 150310713 150310713 C T ZNF300P1 RNA 0.16 TCGA-06-5416-01 5 150639363 150639363 G T GM2A Missense_Mutation p.K43N 0.31 deleterious(0.04) probably_damaging(0.923) TCGA-06-5416-01 5 150646954 150646954 G T GM2A Missense_Mutation p.S175I 0.53 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 150647041 150647041 G A GM2A 3'UTR 0.18 TCGA-06-5416-01 5 150657199 150657199 G A SLC36A3 Missense_Mutation p.R431C 0.31 deleterious(0) benign(0.032) TCGA-06-5416-01 5 150663730 150663730 A C SLC36A3 Missense_Mutation p.F324L 0.35 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 5 150723106 150723106 G A SLC36A2 Silent p.H103H 0.51 TCGA-06-5416-01 5 150843197 150843197 G A SLC36A1 Missense_Mutation p.G76D 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 150844708 150844708 C T SLC36A1 Missense_Mutation p.R133W 0.12 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 5 150858910 150858910 C T SLC36A1 Missense_Mutation p.S340F 0.55 deleterious(0.01) probably_damaging(0.914) TCGA-06-5416-01 5 150885240 150885240 A G FAT2 Silent p.C4312C 0.12 TCGA-06-5416-01 5 150891852 150891852 C T FAT2 Missense_Mutation p.A3927T 0.24 benign(0.021) TCGA-06-5416-01 5 150930278 150930278 G A FAT2 Missense_Mutation p.T1484I 0.56 probably_damaging(0.934) TCGA-06-5416-01 5 150945835 150945835 C T FAT2 Silent p.E886E 0.34 TCGA-06-5416-01 5 151179526 151179526 G A G3BP1 Missense_Mutation p.R307Q 0.13 tolerated(0.21) benign(0) TCGA-06-5416-01 5 151784755 151784755 G T NMUR2 5'UTR 0.21 TCGA-06-5416-01 5 153078599 153078599 C T GRIA1 Missense_Mutation p.A483V 0.47 tolerated(0.51) benign(0.012) TCGA-06-5416-01 5 153144033 153144033 C A GRIA1 Missense_Mutation p.F631L 0.34 deleterious(0) possibly_damaging(0.728) TCGA-06-5416-01 5 153381859 153381859 C T FAM114A2 Missense_Mutation p.G403D 0.18 deleterious(0) possibly_damaging(0.842) TCGA-06-5416-01 5 153709218 153709218 G A GALNT10 Missense_Mutation p.R163H 0.17 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 154170249 154170249 G T LARP1 Missense_Mutation p.E104D 0.34 deleterious(0.01) probably_damaging(0.99) TCGA-06-5416-01 5 154193538 154193538 C T LARP1 Missense_Mutation p.S981F 0.20 deleterious(0) probably_damaging(0.942) TCGA-06-5416-01 5 154267809 154267809 C T GEMIN5 Silent p.T1496T 0.35 TCGA-06-5416-01 5 154278007 154278007 C T GEMIN5 Missense_Mutation p.S1113N 0.16 tolerated(0.16) possibly_damaging(0.821) TCGA-06-5416-01 5 154284947 154284947 T G GEMIN5 Missense_Mutation p.K829Q 0.17 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 5 154292489 154292489 C A GEMIN5 Silent p.L655L 0.31 TCGA-06-5416-01 5 154299658 154299658 C A GEMIN5 Nonsense_Mutation p.E490* 0.51 TCGA-06-5416-01 5 154393627 154393627 G A KIF4B Missense_Mutation p.A70T 0.33 tolerated(0.19) benign(0.063) TCGA-06-5416-01 5 154393629 154393629 G A KIF4B Silent p.A70A 0.18 TCGA-06-5416-01 5 154394045 154394045 C T KIF4B Missense_Mutation p.S209L 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 154394382 154394382 G T KIF4B Missense_Mutation p.E321D 0.17 tolerated(0.14) probably_damaging(0.966) TCGA-06-5416-01 5 154394613 154394613 G A KIF4B Silent p.E398E 0.18 TCGA-06-5416-01 5 156191 156191 C T PLEKHG4B Silent p.V382V 0.45 TCGA-06-5416-01 5 156381650 156381650 C T TIMD4 Missense_Mutation p.C59Y 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 156533676 156533676 T G HAVCR2 Missense_Mutation p.N119T 0.37 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 156668672 156668672 C A ITK Silent p.L334L 0.18 TCGA-06-5416-01 5 156671280 156671280 C A ITK Missense_Mutation p.S414Y 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-06-5416-01 5 156899835 156899835 A G NIPAL4 Missense_Mutation p.N423S 0.23 tolerated(0.25) benign(0.009) TCGA-06-5416-01 5 156899882 156899882 G A NIPAL4 Missense_Mutation p.D439N 0.46 tolerated(0.08) probably_damaging(1) TCGA-06-5416-01 5 156899893 156899893 C T NIPAL4 Silent p.V442V 0.27 TCGA-06-5416-01 5 157214848 157214848 C T CLINT1 Missense_Mutation p.G580R 0.21 deleterious(0) probably_damaging(0.911) TCGA-06-5416-01 5 157216397 157216397 G T CLINT1 Nonsense_Mutation p.S520* 0.19 TCGA-06-5416-01 5 157216432 157216432 T C CLINT1 Silent p.L508L 0.16 TCGA-06-5416-01 5 157218765 157218765 G T CLINT1 Missense_Mutation p.F442L 0.20 tolerated(0.11) benign(0.006) TCGA-06-5416-01 5 157244512 157244512 G A CLINT1 Nonsense_Mutation p.R29* 0.63 TCGA-06-5416-01 5 158596776 158596776 C T RNF145 Silent p.T313T 0.15 TCGA-06-5416-01 5 158697405 158697405 T C UBLCP1 Missense_Mutation p.V95A 0.15 deleterious(0) benign(0.42) TCGA-06-5416-01 5 159344202 159344202 C T ADRA1B Missense_Mutation p.T97I 0.15 tolerated(0.1) probably_damaging(1) TCGA-06-5416-01 5 159492122 159492122 C A TTC1 3'UTR 0.30 TCGA-06-5416-01 5 159507697 159507697 A G PWWP2A Missense_Mutation p.F544L 0.47 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-06-5416-01 5 159640766 159640766 G A FABP6 Silent p.A25A 0.30 TCGA-06-5416-01 5 159640806 159640806 A G FABP6 Missense_Mutation p.K39E 0.28 deleterious_low_confidence(0.02) benign(0.005) TCGA-06-5416-01 5 159820913 159820913 T G C5orf54 Missense_Mutation p.K529Q 0.33 deleterious(0.04) possibly_damaging(0.88) TCGA-06-5416-01 5 159835379 159835379 C T SLU7 Missense_Mutation p.R259Q 0.58 deleterious(0.02) benign(0.43) TCGA-06-5416-01 5 159835461 159835461 C A SLU7 Missense_Mutation p.D232Y 0.16 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 5 159840612 159840612 C T SLU7 Missense_Mutation p.G141R 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 159840921 159840921 C A SLU7 Missense_Mutation p.K130N 0.34 deleterious(0.04) possibly_damaging(0.516) TCGA-06-5416-01 5 159992821 159992821 C A ATP10B Missense_Mutation p.R1342I 0.14 deleterious(0.01) possibly_damaging(0.866) TCGA-06-5416-01 5 160018077 160018077 T C ATP10B Missense_Mutation p.I1212V 0.14 tolerated(0.97) benign(0.02) TCGA-06-5416-01 5 160025972 160025972 G A ATP10B Silent p.Y1123Y 0.36 TCGA-06-5416-01 5 160039887 160039887 G A ATP10B Missense_Mutation p.T900M 0.55 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 160047795 160047795 C A ATP10B Missense_Mutation p.D659Y 0.20 deleterious(0.02) probably_damaging(0.986) TCGA-06-5416-01 5 160059188 160059188 G T ATP10B Missense_Mutation p.S523Y 0.13 deleterious(0.02) possibly_damaging(0.823) TCGA-06-5416-01 5 160059369 160059369 G A ATP10B Nonsense_Mutation p.R463* 0.37 TCGA-06-5416-01 5 160972257 160972257 G A GABRB2 Silent p.I71I 0.35 TCGA-06-5416-01 5 161324243 161324243 G A GABRA1 Missense_Mutation p.E396K 0.36 tolerated(0.51) benign(0.178) TCGA-06-5416-01 5 161520971 161520971 G A GABRG2 Missense_Mutation p.R82Q 0.51 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 5 161528316 161528316 C T GABRG2 Silent p.F208F 0.14 TCGA-06-5416-01 5 161578742 161578742 C T GABRG2 Missense_Mutation p.R419W 0.41 deleterious(0) benign(0.002) TCGA-06-5416-01 5 162868894 162868894 G T CCNG1 Missense_Mutation p.R174I 0.53 deleterious(0.01) benign(0.048) TCGA-06-5416-01 5 162884020 162884020 G A NUDCD2 Missense_Mutation p.S102F 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 162894724 162894724 T G HMMR Missense_Mutation p.N81K 0.48 tolerated(0.33) possibly_damaging(0.53) TCGA-06-5416-01 5 163044 163044 C T PLEKHG4B Missense_Mutation p.R597C 0.23 tolerated(0.27) benign(0.001) TCGA-06-5416-01 5 163451 163451 A G PLEKHG4B Missense_Mutation p.I732M 0.28 tolerated(0.28) benign(0.008) TCGA-06-5416-01 5 16451699 16451699 C A ZNF622 3'UTR 0.50 TCGA-06-5416-01 5 16668440 16668440 C T MYO10 Silent p.A2007A 0.20 TCGA-06-5416-01 5 16673833 16673833 G A MYO10 Silent p.G1710G 0.51 TCGA-06-5416-01 5 16701513 16701513 G A MYO10 Silent p.F997F 0.15 TCGA-06-5416-01 5 16701813 16701813 G A MYO10 Silent p.I897I 0.47 TCGA-06-5416-01 5 16701944 16701944 C A MYO10 Nonsense_Mutation p.E854* 0.15 TCGA-06-5416-01 5 167617478 167617478 C A TENM2 Missense_Mutation p.F902L 0.20 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 5 167627069 167627069 C A TENM2 Silent p.A1121A 0.18 TCGA-06-5416-01 5 167631598 167631598 C T TENM2 Nonsense_Mutation p.R1266* 0.40 TCGA-06-5416-01 5 16766295 16766295 G T MYO10 Missense_Mutation p.S358Y 0.17 deleterious(0) possibly_damaging(0.812) TCGA-06-5416-01 5 167675234 167675234 T G TENM2 Nonsense_Mutation p.Y2430* 0.32 TCGA-06-5416-01 5 167927676 167927676 C T RARS Silent p.N301N 0.48 TCGA-06-5416-01 5 167987968 167987968 C T PANK3 Intron 0.35 TCGA-06-5416-01 5 167995890 167995890 T C PANK3 Missense_Mutation p.I48V 0.57 tolerated(0.09) probably_damaging(0.979) TCGA-06-5416-01 5 168139300 168139300 G A SLIT3 Missense_Mutation p.S848F 0.15 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 5 168175434 168175434 C T SLIT3 Missense_Mutation p.E715K 0.17 tolerated(0.06) benign(0.001) TCGA-06-5416-01 5 168179980 168179980 C T SLIT3 Silent p.T651T 0.51 TCGA-06-5416-01 5 168201326 168201326 C A SLIT3 Missense_Mutation p.Q403H 0.17 tolerated(0.54) benign(0.023) TCGA-06-5416-01 5 169031239 169031239 C T SPDL1 3'UTR 0.31 TCGA-06-5416-01 5 169533081 169533081 C T FOXI1 Silent p.G40G 0.33 TCGA-06-5416-01 5 169661168 169661168 C T C5orf58 Missense_Mutation p.A10V 0.11 tolerated_low_confidence(0.28) possibly_damaging(0.866) TCGA-06-5416-01 5 170238962 170238962 G A GABRP Silent p.G341G 0.20 TCGA-06-5416-01 5 170239174 170239174 G T GABRP Missense_Mutation p.S412I 0.37 deleterious(0) benign(0.289) TCGA-06-5416-01 5 170346570 170346570 G A RANBP17 Silent p.T409T 0.51 TCGA-06-5416-01 5 170351364 170351364 T C RANBP17 Silent p.D426D 0.16 TCGA-06-5416-01 5 170837607 170837607 C A NPM1 3'UTR 0.36 TCGA-06-5416-01 5 170863141 170863141 G A FGF18 Silent p.E38E 0.12 TCGA-06-5416-01 5 170876235 170876235 G A FGF18 Missense_Mutation p.R112H 0.19 deleterious(0.05) benign(0.01) TCGA-06-5416-01 5 171305081 171305081 C T FBXW11 Missense_Mutation p.G281D 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 5 171326938 171326938 T G FBXW11 Silent p.G180G 0.19 TCGA-06-5416-01 5 171509468 171509468 C T STK10 Silent p.E617E 0.20 TCGA-06-5416-01 5 171780984 171780984 C T SH3PXD2B Silent p.P231P 0.49 TCGA-06-5416-01 5 172395525 172395525 T C RPL26L1 Missense_Mutation p.Y78H 0.36 tolerated(0.05) benign(0.227) TCGA-06-5416-01 5 172396644 172396644 T G RPL26L1 3'UTR 0.33 TCGA-06-5416-01 5 172517830 172517830 G T CREBRF Missense_Mutation p.K216N 0.13 deleterious_low_confidence(0.04) probably_damaging(0.996) TCGA-06-5416-01 5 172590837 172590837 G A BNIP1 Silent p.T243T 0.17 TCGA-06-5416-01 5 172590860 172590860 C T BNIP1 Missense_Mutation p.A251V 0.64 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 5 172590885 172590885 C T BNIP1 Silent p.V259V 0.13 TCGA-06-5416-01 5 17275415 17275415 G A BASP1 Silent p.A30A 0.28 TCGA-06-5416-01 5 173378936 173378936 G A CPEB4 Missense_Mutation p.R592Q 0.18 deleterious(0) possibly_damaging(0.848) TCGA-06-5416-01 5 174868758 174868758 G A DRD1 3'UTR 0.16 TCGA-06-5416-01 5 174868783 174868783 T G DRD1 Missense_Mutation p.Q440H 0.18 tolerated(0.09) benign(0.001) TCGA-06-5416-01 5 174869400 174869400 C A DRD1 Missense_Mutation p.A235S 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 5 174869839 174869839 G T DRD1 Silent p.G88G 0.17 TCGA-06-5416-01 5 174869949 174869949 G A DRD1 Nonsense_Mutation p.R52* 0.32 TCGA-06-5416-01 5 175111183 175111183 C A HRH2 Missense_Mutation p.S316Y 0.34 tolerated(0.16) benign(0.169) TCGA-06-5416-01 5 175574067 175574067 C T RP11-844P9.2 RNA 0.23 TCGA-06-5416-01 5 175581981 175581981 C A RP11-844P9.2 RNA 0.37 TCGA-06-5416-01 5 175819922 175819922 C T CLTB Silent p.K181K 0.15 TCGA-06-5416-01 5 175933965 175933965 C A FAF2 3'UTR 0.14 TCGA-06-5416-01 5 176001132 176001132 G T CDHR2 Missense_Mutation p.D152Y 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 176079746 176079746 C A TSPAN17 Missense_Mutation p.F96L 0.38 deleterious(0) benign(0.399) TCGA-06-5416-01 5 176301294 176301294 G A UNC5A Missense_Mutation p.D369N 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 176305513 176305513 G T UNC5A Missense_Mutation p.R686L 0.14 deleterious(0.02) benign(0.038) TCGA-06-5416-01 5 176383013 176383013 C A UIMC1 Missense_Mutation p.R429I 0.09 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 5 176517459 176517459 C T FGFR4 Missense_Mutation p.R54C 0.17 deleterious(0) possibly_damaging(0.696) TCGA-06-5416-01 5 176520478 176520478 C T FGFR4 Silent p.S441S 0.15 TCGA-06-5416-01 5 176562514 176562514 A G NSD1 Missense_Mutation p.E137G 0.19 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-06-5416-01 5 176638298 176638298 G T NSD1 Missense_Mutation p.E966D 0.49 tolerated_low_confidence(0.08) possibly_damaging(0.57) TCGA-06-5416-01 5 176694713 176694713 G A NSD1 Missense_Mutation p.R1766Q 0.37 deleterious(0.02) probably_damaging(0.923) TCGA-06-5416-01 5 176721499 176721499 A C NSD1 Missense_Mutation p.K2377T 0.39 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-06-5416-01 5 176722321 176722321 C A NSD1 Missense_Mutation p.S2651Y 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.629) TCGA-06-5416-01 5 176815174 176815174 C T SLC34A1 Missense_Mutation p.T275M 0.36 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 5 176829284 176829284 C A F12 3'UTR 0.52 TCGA-06-5416-01 5 176935393 176935393 G A DOK3 Missense_Mutation p.R129C 0.33 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 5 176965990 176965990 G A FAM193B Silent p.G123G 0.20 TCGA-06-5416-01 5 177175696 177175696 G A FAM153A 5'UTR 0.23 TCGA-06-5416-01 5 177474013 177474013 C A FAM153C Intron 0.15 TCGA-06-5416-01 5 177548573 177548573 G T N4BP3 Missense_Mutation p.K402N 0.40 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 5 177665560 177665560 C T COL23A1 3'UTR 0.23 TCGA-06-5416-01 5 177672961 177672961 G A COL23A1 Silent p.P474P 0.31 TCGA-06-5416-01 5 177688746 177688746 G T COL23A1 Missense_Mutation p.P227T 0.13 tolerated(0.23) possibly_damaging(0.617) TCGA-06-5416-01 5 178039842 178039842 A C CLK4 Missense_Mutation p.I292M 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 5 178045718 178045718 C A CLK4 Nonsense_Mutation p.E75* 0.37 TCGA-06-5416-01 5 178139006 178139006 G T ZNF354A 3'UTR 0.56 TCGA-06-5416-01 5 178139311 178139311 C T ZNF354A Missense_Mutation p.R523Q 0.19 tolerated(0.5) benign(0.015) TCGA-06-5416-01 5 178139506 178139506 C T ZNF354A Missense_Mutation p.R458Q 0.14 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 178139663 178139663 C T ZNF354A Missense_Mutation p.G406R 0.30 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 178358739 178358739 G A ZFP2 Missense_Mutation p.R142Q 0.25 tolerated(0.08) benign(0.142) TCGA-06-5416-01 5 178359298 178359298 T C ZFP2 Silent p.C328C 0.15 TCGA-06-5416-01 5 178392987 178392987 T C ZNF454 3'UTR 0.16 TCGA-06-5416-01 5 178413328 178413328 C T GRM6 Missense_Mutation p.A643T 0.44 deleterious(0.02) possibly_damaging(0.491) TCGA-06-5416-01 5 178505879 178505879 C T ZNF354C Missense_Mutation p.S149L 0.52 tolerated(0.26) benign(0.004) TCGA-06-5416-01 5 178506175 178506175 G A ZNF354C Missense_Mutation p.E248K 0.48 deleterious(0.03) possibly_damaging(0.62) TCGA-06-5416-01 5 178541309 178541309 G A ADAMTS2 Silent p.G1065G 0.45 TCGA-06-5416-01 5 178559795 178559795 C T ADAMTS2 Missense_Mutation p.R731Q 0.12 deleterious(0.01) probably_damaging(0.943) TCGA-06-5416-01 5 178566925 178566925 C T ADAMTS2 Missense_Mutation p.V581M 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 178700001 178700001 G A ADAMTS2 Missense_Mutation p.A200V 0.30 tolerated(0.15) benign(0.009) TCGA-06-5416-01 5 179136028 179136028 A C CANX Missense_Mutation p.K166Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 179153680 179153680 G A CANX Splice_Site p.X549_splice 0.20 TCGA-06-5416-01 5 179192807 179192807 G T MAML1 Missense_Mutation p.D266Y 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 179193193 179193193 C A MAML1 Silent p.S394S 0.55 TCGA-06-5416-01 5 179193707 179193707 A C MAML1 Missense_Mutation p.N566H 0.18 tolerated(0.28) possibly_damaging(0.681) TCGA-06-5416-01 5 179250039 179250039 G A SQSTM1 Missense_Mutation p.R96Q 0.22 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 5 179251229 179251229 C A SQSTM1 Missense_Mutation p.F193L 0.14 tolerated(0.26) benign(0.017) TCGA-06-5416-01 5 179263750 179263750 A G SQSTM1 3'UTR 0.47 TCGA-06-5416-01 5 179269057 179269057 G A C5orf45 Missense_Mutation p.S100L 0.35 tolerated(0.33) benign(0.04) TCGA-06-5416-01 5 179291116 179291116 C A TBC1D9B Nonsense_Mutation p.E1029* 0.50 TCGA-06-5416-01 5 179302156 179302156 C T TBC1D9B Silent p.E644E 0.16 TCGA-06-5416-01 5 179663422 179663422 G T MAPK9 Missense_Mutation p.L413I 0.31 tolerated_low_confidence(0.11) benign(0.02) TCGA-06-5416-01 5 179728443 179728443 G A GFPT2 3'UTR 0.32 TCGA-06-5416-01 5 179743823 179743823 G A GFPT2 Nonsense_Mutation p.R365* 0.35 TCGA-06-5416-01 5 179757753 179757753 C A GFPT2 Nonsense_Mutation p.E161* 0.18 TCGA-06-5416-01 5 179763486 179763486 T C GFPT2 Silent p.E69E 0.49 TCGA-06-5416-01 5 179765585 179765585 A G GFPT2 Missense_Mutation p.M8T 0.21 deleterious(0.02) benign(0.009) TCGA-06-5416-01 5 180030279 180030279 G A FLT4 Silent p.S1335S 0.54 TCGA-06-5416-01 5 180166318 180166318 A C OR2Y1 Silent p.V247V 0.20 TCGA-06-5416-01 5 180166397 180166397 G A OR2Y1 Missense_Mutation p.A221V 0.15 tolerated(0.44) benign(0.019) TCGA-06-5416-01 5 180166621 180166621 G A OR2Y1 Silent p.I146I 0.33 TCGA-06-5416-01 5 180166758 180166758 G A OR2Y1 Missense_Mutation p.L101F 0.12 tolerated(0.11) benign(0.12) TCGA-06-5416-01 5 180166915 180166915 G A OR2Y1 Silent p.L48L 0.25 TCGA-06-5416-01 5 180277719 180277719 C T ZFP62 Missense_Mutation p.G259E 0.41 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 5 180419847 180419847 C T BTNL3 Silent p.V28V 0.93 TCGA-06-5416-01 5 180432682 180432682 C A BTNL3 Missense_Mutation p.P404H 0.31 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 5 180622382 180622382 G A TRIM7 Silent p.G440G 0.42 TCGA-06-5416-01 5 180625213 180625213 G T TRIM7 Missense_Mutation p.L332I 0.23 deleterious(0.01) probably_damaging(0.979) TCGA-06-5416-01 5 180670763 180670763 C T GNB2L1 Missense_Mutation p.G13D 0.50 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 5 180687738 180687738 T C TRIM52 Missense_Mutation p.Y26C 0.51 deleterious(0) possibly_damaging(0.861) TCGA-06-5416-01 5 181778 181778 G A PLEKHG4B Missense_Mutation p.V1162I 0.25 tolerated(0.07) benign(0.001) TCGA-06-5416-01 5 182248 182248 C T PLEKHG4B Missense_Mutation p.S1209L 0.46 tolerated(0.39) benign(0.07) TCGA-06-5416-01 5 1878388 1878388 G A IRX4 Missense_Mutation p.P419S 0.53 tolerated_low_confidence(0.76) benign(0.001) TCGA-06-5416-01 5 19473368 19473368 G T CDH18 Silent p.L780L 0.17 TCGA-06-5416-01 5 19473617 19473617 G A CDH18 Silent p.L697L 0.26 TCGA-06-5416-01 5 19483662 19483662 C A CDH18 Splice_Site p.X544_splice 0.22 TCGA-06-5416-01 5 19571722 19571722 C T CDH18 Missense_Mutation p.A407T 0.15 deleterious(0) possibly_damaging(0.646) TCGA-06-5416-01 5 19571871 19571871 C T CDH18 Missense_Mutation p.R357H 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-06-5416-01 5 205940 205940 G A CCDC127 Silent p.V85V 0.45 TCGA-06-5416-01 5 21459677 21459677 C T GUSBP1 RNA 0.13 TCGA-06-5416-01 5 21755747 21755747 C T CDH12 Missense_Mutation p.S613N 0.26 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 5 21760770 21760770 G A CDH12 Silent p.V510V 0.21 TCGA-06-5416-01 5 21842384 21842384 G A CDH12 Nonsense_Mutation p.Q234* 0.21 TCGA-06-5416-01 5 21975396 21975396 G T CDH12 Missense_Mutation p.D110E 0.40 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 23522791 23522791 G A PRDM9 Missense_Mutation p.D227N 0.23 deleterious(0.01) possibly_damaging(0.579) TCGA-06-5416-01 5 24498546 24498546 G T CDH10 Missense_Mutation p.F492L 0.16 tolerated(0.67) benign(0.015) TCGA-06-5416-01 5 24593529 24593529 A T CDH10 Missense_Mutation p.I24K 0.21 tolerated(0.92) benign(0.014) TCGA-06-5416-01 5 26906855 26906855 G T CDH9 Missense_Mutation p.P206T 0.15 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 2752764 2752764 G T C5orf38 Missense_Mutation p.D77Y 0.20 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-06-5416-01 5 31323492 31323492 C T CDH6 3'UTR 0.44 TCGA-06-5416-01 5 31468095 31468095 C T DROSHA Missense_Mutation p.V773I 0.54 tolerated(0.11) benign(0.353) TCGA-06-5416-01 5 31538667 31538667 T C C5orf22 Silent p.N226N 0.15 TCGA-06-5416-01 5 31552950 31552950 C T C5orf22 Missense_Mutation p.R424C 0.42 deleterious(0.01) benign(0.009) TCGA-06-5416-01 5 31983300 31983300 C T PDZD2 Silent p.Y172Y 0.16 TCGA-06-5416-01 5 32000359 32000359 G T PDZD2 Missense_Mutation p.Q412H 0.38 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 5 32010499 32010499 G A PDZD2 Missense_Mutation p.V440I 0.24 tolerated(0.06) benign(0.02) TCGA-06-5416-01 5 32061176 32061176 C T PDZD2 Missense_Mutation p.A796V 0.19 deleterious(0) possibly_damaging(0.811) TCGA-06-5416-01 5 32089235 32089235 C T PDZD2 Missense_Mutation p.A1894V 0.37 tolerated(0.05) benign(0.035) TCGA-06-5416-01 5 32108278 32108278 C A PDZD2 3'UTR 0.16 TCGA-06-5416-01 5 32126262 32126262 G T GOLPH3 3'UTR 0.20 TCGA-06-5416-01 5 32230188 32230188 A C MTMR12 Missense_Mutation p.I647S 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 32239265 32239265 C T MTMR12 Missense_Mutation p.D396N 0.34 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 32385709 32385709 G A ZFR Missense_Mutation p.A849V 0.44 deleterious(0) unknown(0) TCGA-06-5416-01 5 32712649 32712649 G T NPR3 Missense_Mutation p.R256I 0.18 deleterious(0.01) probably_damaging(0.953) TCGA-06-5416-01 5 32780863 32780863 G T NPR3 Missense_Mutation p.D411Y 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 33441233 33441233 G A TARS Missense_Mutation p.G14E 0.18 tolerated_low_confidence(0.57) benign(0.001) TCGA-06-5416-01 5 33527365 33527365 A G ADAMTS12 Silent p.C1571C 0.49 TCGA-06-5416-01 5 33937804 33937804 G T RXFP3 Missense_Mutation p.R320I 0.52 deleterious(0) probably_damaging(0.947) TCGA-06-5416-01 5 33984425 33984425 G A SLC45A2 Silent p.V88V 0.29 TCGA-06-5416-01 5 34020754 34020754 G A C1QTNF3 Silent p.G298G 0.05 TCGA-06-5416-01 5 34796070 34796070 A G RAI14 Missense_Mutation p.H68R 0.25 deleterious(0.04) possibly_damaging(0.543) TCGA-06-5416-01 5 34909418 34909418 G A RAD1 Missense_Mutation p.P204S 0.19 tolerated(0.1) benign(0.431) TCGA-06-5416-01 5 34933943 34933943 G T DNAJC21 Nonsense_Mutation p.E41* 0.37 TCGA-06-5416-01 5 35649489 35649489 C T SPEF2 Silent p.F251F 0.22 TCGA-06-5416-01 5 35692758 35692758 C A SPEF2 Missense_Mutation p.L611I 0.44 tolerated(0.41) benign(0.042) TCGA-06-5416-01 5 35700619 35700619 C T SPEF2 Silent p.D721D 0.18 TCGA-06-5416-01 5 35709231 35709231 A G SPEF2 Intron 0.21 TCGA-06-5416-01 5 35876483 35876483 C T IL7R Silent p.I425I 0.20 TCGA-06-5416-01 5 35910517 35910517 T G CAPSL Missense_Mutation p.K89T 0.19 tolerated(0.47) benign(0.034) TCGA-06-5416-01 5 35957410 35957410 C T UGT3A1 Missense_Mutation p.A319T 0.36 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 36037940 36037940 C A UGT3A2 Missense_Mutation p.E418D 0.20 tolerated(0.16) benign(0.084) TCGA-06-5416-01 5 36049024 36049024 G T UGT3A2 Silent p.G270G 0.18 TCGA-06-5416-01 5 36052087 36052087 C A UGT3A2 Splice_Site p.X66_splice 0.19 TCGA-06-5416-01 5 36143376 36143376 C T LMBRD2 Missense_Mutation p.D26N 0.25 tolerated(0.96) possibly_damaging(0.841) TCGA-06-5416-01 5 36195268 36195268 C T NADK2 Missense_Mutation p.R436Q 0.27 tolerated(0.12) possibly_damaging(0.732) TCGA-06-5416-01 5 36265140 36265140 C T RANBP3L Missense_Mutation p.R159Q 0.22 tolerated(1) benign(0) TCGA-06-5416-01 5 36976033 36976033 G T NIPBL Missense_Mutation p.A342S 0.19 tolerated_low_confidence(0.78) benign(0.005) TCGA-06-5416-01 5 36976271 36976271 C T NIPBL Missense_Mutation p.S421L 0.24 tolerated_low_confidence(0.16) benign(0.006) TCGA-06-5416-01 5 36985787 36985787 G A NIPBL Silent p.G835G 0.16 TCGA-06-5416-01 5 37006586 37006586 A G NIPBL Missense_Mutation p.Y1328C 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 37020676 37020676 A C NIPBL Missense_Mutation p.E1709A 0.38 tolerated(0.14) benign(0.05) TCGA-06-5416-01 5 37026424 37026424 G A NIPBL Missense_Mutation p.D1935N 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 37059221 37059221 C A NIPBL Missense_Mutation p.L2547I 0.21 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 37064110 37064110 G A NIPBL Intron 0.49 TCGA-06-5416-01 5 37157886 37157886 C T C5orf42 Missense_Mutation p.D2615N 0.22 tolerated(0.08) benign(0.014) TCGA-06-5416-01 5 37303360 37303360 A G NUP155 Splice_Site p.X1106_splice 0.19 TCGA-06-5416-01 5 37310758 37310758 T C NUP155 Missense_Mutation p.I842V 0.43 tolerated(0.2) benign(0.047) TCGA-06-5416-01 5 37370822 37370822 C A NUP155 Intron 0.23 TCGA-06-5416-01 5 37392216 37392216 C T WDR70 Missense_Mutation p.S97F 0.44 tolerated(0.08) benign(0.128) TCGA-06-5416-01 5 38407018 38407018 C A EGFLAM Missense_Mutation p.S306Y 0.40 tolerated(0.4) benign(0.005) TCGA-06-5416-01 5 38412645 38412645 G T EGFLAM Missense_Mutation p.E463D 0.22 tolerated(0.2) benign(0.026) TCGA-06-5416-01 5 38506127 38506127 C T LIFR Missense_Mutation p.E391K 0.39 tolerated(0.36) benign(0.004) TCGA-06-5416-01 5 38886398 38886398 G A OSMR Intron 0.47 TCGA-06-5416-01 5 38942409 38942409 G A RICTOR Silent p.S1708S 0.23 TCGA-06-5416-01 5 38950648 38950648 G A RICTOR Missense_Mutation p.S1101L 0.43 deleterious(0) benign(0.35) TCGA-06-5416-01 5 39135042 39135042 G T FYB Missense_Mutation p.S540R 0.23 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 39316066 39316066 G T C9 Silent p.I227I 0.45 TCGA-06-5416-01 5 39376121 39376121 G T DAB2 Missense_Mutation p.S742Y 0.47 tolerated(0.58) possibly_damaging(0.492) TCGA-06-5416-01 5 39376139 39376139 T C DAB2 Missense_Mutation p.N736S 0.23 tolerated(0.61) benign(0.083) TCGA-06-5416-01 5 39382955 39382955 G A DAB2 Missense_Mutation p.S369L 0.40 tolerated(0.1) benign(0.001) TCGA-06-5416-01 5 40681365 40681365 G A PTGER4 Silent p.P90P 0.47 TCGA-06-5416-01 5 40692468 40692468 A C PTGER4 Missense_Mutation p.E485D 0.17 deleterious_low_confidence(0.01) benign(0.055) TCGA-06-5416-01 5 40762779 40762779 C A PRKAA1 3'Flank 0.25 TCGA-06-5416-01 5 40832552 40832552 G A RPL37 3'UTR 0.24 TCGA-06-5416-01 5 40841481 40841481 A G CARD6 5'UTR 0.24 TCGA-06-5416-01 5 40841676 40841676 A G CARD6 Silent p.V64V 0.20 TCGA-06-5416-01 5 40841743 40841743 G A CARD6 Missense_Mutation p.A87T 0.46 tolerated(0.1) benign(0.284) TCGA-06-5416-01 5 40843768 40843768 A C CARD6 Missense_Mutation p.E266D 0.42 tolerated(0.05) possibly_damaging(0.628) TCGA-06-5416-01 5 40853431 40853431 G T CARD6 Missense_Mutation p.R666I 0.05 deleterious(0.02) benign(0.03) TCGA-06-5416-01 5 40853601 40853601 G T CARD6 Missense_Mutation p.V723L 0.20 deleterious(0) benign(0.026) TCGA-06-5416-01 5 40853968 40853968 T C CARD6 Missense_Mutation p.V845A 0.24 tolerated(0.1) benign(0.004) TCGA-06-5416-01 5 40945328 40945328 A C C7 Missense_Mutation p.E199A 0.44 deleterious(0) possibly_damaging(0.899) TCGA-06-5416-01 5 40945396 40945396 C T C7 Missense_Mutation p.R222C 0.16 deleterious(0) possibly_damaging(0.634) TCGA-06-5416-01 5 40959625 40959625 G A C7 Missense_Mutation p.E522K 0.38 tolerated(0.26) benign(0.013) TCGA-06-5416-01 5 40976874 40976874 G A C7 Silent p.V699V 0.38 TCGA-06-5416-01 5 40998158 40998158 A G MROH2B Missense_Mutation p.L1585P 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 5 41018865 41018865 G A MROH2B Silent p.D867D 0.47 TCGA-06-5416-01 5 41058298 41058298 C T MROH2B Missense_Mutation p.S208N 0.46 deleterious(0) benign(0.124) TCGA-06-5416-01 5 41065484 41065484 G A MROH2B Silent p.L104L 0.17 TCGA-06-5416-01 5 41313826 41313826 C A PLCXD3 Nonsense_Mutation p.E287* 0.19 TCGA-06-5416-01 5 413460 413460 C T AHRR Missense_Mutation p.S122F 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 5 413516 413516 G A AHRR Missense_Mutation p.A141T 0.24 deleterious(0.01) probably_damaging(0.966) TCGA-06-5416-01 5 41803250 41803250 C A OXCT1 Missense_Mutation p.G324V 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 42711375 42711375 C T GHR Missense_Mutation p.R229C 0.22 deleterious(0) possibly_damaging(0.901) TCGA-06-5416-01 5 42719061 42719061 C T GHR Silent p.I484I 0.34 TCGA-06-5416-01 5 42801558 42801558 T G CCDC152 3'UTR 0.46 TCGA-06-5416-01 5 43280372 43280372 C T NIM1K Silent p.L284L 0.25 TCGA-06-5416-01 5 43280658 43280658 C T NIM1K Missense_Mutation p.R380C 0.39 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 5 43298832 43298832 C A HMGCS1 Missense_Mutation p.R79I 0.20 deleterious(0) probably_damaging(0.964) TCGA-06-5416-01 5 434202 434202 C A AHRR Silent p.I471I 0.14 TCGA-06-5416-01 5 43535033 43535033 C T PAIP1 Silent p.R373R 0.14 TCGA-06-5416-01 5 43555972 43555972 G A PAIP1 Missense_Mutation p.A132V 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 5 44388609 44388609 G T FGF10 Missense_Mutation p.S59Y 0.36 deleterious(0.03) benign(0.424) TCGA-06-5416-01 5 447731 447731 G T EXOC3 Missense_Mutation p.Q76H 0.29 tolerated(0.08) probably_damaging(0.948) TCGA-06-5416-01 5 45261975 45261975 G A HCN1 3'UTR 0.12 TCGA-06-5416-01 5 481703 481703 G A SLC9A3 Silent p.I498I 0.18 TCGA-06-5416-01 5 483492 483492 G A SLC9A3 Silent p.A346A 0.24 TCGA-06-5416-01 5 488445 488445 C T SLC9A3 Missense_Mutation p.D221N 0.24 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 49699038 49699038 T C EMB Missense_Mutation p.Y284C 0.19 tolerated(0.05) probably_damaging(0.935) TCGA-06-5416-01 5 49699129 49699129 C T EMB Missense_Mutation p.V254M 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 50074430 50074430 G A PARP8 Missense_Mutation p.E206K 0.17 deleterious(0) probably_damaging(0.925) TCGA-06-5416-01 5 50090050 50090050 G T PARP8 Missense_Mutation p.Q249H 0.18 tolerated(0.13) possibly_damaging(0.492) TCGA-06-5416-01 5 50118184 50118184 C T PARP8 Nonsense_Mutation p.R604* 0.45 TCGA-06-5416-01 5 50123862 50123862 A C PARP8 Missense_Mutation p.K688Q 0.45 tolerated(0.12) benign(0.134) TCGA-06-5416-01 5 50128680 50128680 A G PARP8 Missense_Mutation p.T767A 0.42 tolerated(0.35) benign(0.004) TCGA-06-5416-01 5 5146320 5146320 C T ADAMTS16 Missense_Mutation p.R85W 0.42 deleterious(0) benign(0.12) TCGA-06-5416-01 5 5187904 5187904 C A ADAMTS16 Missense_Mutation p.L344I 0.24 deleterious(0.02) probably_damaging(0.984) TCGA-06-5416-01 5 5200289 5200289 C T ADAMTS16 Missense_Mutation p.S453F 0.44 deleterious(0.02) probably_damaging(0.932) TCGA-06-5416-01 5 52340906 52340906 G A ITGA2 Missense_Mutation p.G124E 0.19 tolerated(0.53) benign(0.318) TCGA-06-5416-01 5 52370943 52370943 C T ITGA2 Missense_Mutation p.A906V 0.17 tolerated(0.39) probably_damaging(0.918) TCGA-06-5416-01 5 52778856 52778856 T C FST Missense_Mutation p.W78R 0.44 deleterious(0.01) possibly_damaging(0.853) TCGA-06-5416-01 5 52779376 52779376 G A FST Missense_Mutation p.R107Q 0.17 deleterious(0.05) benign(0.03) TCGA-06-5416-01 5 5318394 5318394 G T ADAMTS16 Missense_Mutation p.D1187Y 0.09 deleterious(0) benign(0.094) TCGA-06-5416-01 5 53815350 53815350 C T SNX18 Missense_Mutation p.A523V 0.18 tolerated(0.49) possibly_damaging(0.854) TCGA-06-5416-01 5 53815640 53815640 G T SNX18 Missense_Mutation p.V620L 0.10 tolerated_low_confidence(0.34) benign(0) TCGA-06-5416-01 5 54281245 54281245 C A ESM1 Missense_Mutation p.S34I 0.23 tolerated(0.09) possibly_damaging(0.703) TCGA-06-5416-01 5 54327432 54327432 G T GZMK Missense_Mutation p.D202Y 0.13 deleterious(0.01) possibly_damaging(0.608) TCGA-06-5416-01 5 5440028 5440028 T C KIAA0947 Splice_Site p.X66_splice 0.50 TCGA-06-5416-01 5 5447846 5447846 G A KIAA0947 Missense_Mutation p.E174K 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 5 54529232 54529232 C T CCNO Silent p.K40K 0.15 TCGA-06-5416-01 5 54552261 54552261 T G DHX29 3'UTR 0.45 TCGA-06-5416-01 5 54572997 54572997 T G DHX29 Missense_Mutation p.K741N 0.45 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 5 5462142 5462142 T C KIAA0947 Missense_Mutation p.S899P 0.21 tolerated(1) benign(0.003) TCGA-06-5416-01 5 5463851 5463851 G A KIAA0947 Silent p.E1468E 0.23 TCGA-06-5416-01 5 54711953 54711953 C A SKIV2L2 Silent p.V988V 0.26 TCGA-06-5416-01 5 54718717 54718717 C T SKIV2L2 Missense_Mutation p.R995C 0.42 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 54721694 54721694 T G PPAP2A Missense_Mutation p.L242F 0.17 tolerated(0.19) benign(0.072) TCGA-06-5416-01 5 5476116 5476116 G A KIAA0947 Nonsense_Mutation p.W2148* 0.26 TCGA-06-5416-01 5 5486894 5486894 C T KIAA0947 Missense_Mutation p.S2194L 0.26 deleterious(0) possibly_damaging(0.876) TCGA-06-5416-01 5 54948446 54948446 G T SLC38A9 Missense_Mutation p.S288Y 0.15 tolerated(0.06) possibly_damaging(0.744) TCGA-06-5416-01 5 55110970 55110970 G T DDX4 Missense_Mutation p.A653S 0.22 deleterious(0.01) probably_damaging(0.967) TCGA-06-5416-01 5 55185844 55185844 A G IL31RA Missense_Mutation p.Y218C 0.23 tolerated(0.18) benign(0.031) TCGA-06-5416-01 5 55204208 55204208 C A IL31RA Silent p.I490I 0.19 TCGA-06-5416-01 5 55236835 55236835 C A IL6ST 3'UTR 0.19 TCGA-06-5416-01 5 55406983 55406983 A G ANKRD55 Missense_Mutation p.V531A 0.19 tolerated_low_confidence(0.49) benign(0.005) TCGA-06-5416-01 5 55422794 55422794 G C ANKRD55 Missense_Mutation p.A251G 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 5 56177000 56177000 G A MAP3K1 Missense_Mutation p.R757H 0.40 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 5 56219543 56219543 G A MIER3 Silent p.N389N 0.17 TCGA-06-5416-01 5 56224639 56224639 T C MIER3 Silent p.A292A 0.16 TCGA-06-5416-01 5 56542948 56542948 C A GPBP1 Missense_Mutation p.S244Y 0.15 tolerated(0.21) possibly_damaging(0.632) TCGA-06-5416-01 5 56778460 56778460 G A ACTBL2 Silent p.D25D 0.21 TCGA-06-5416-01 5 57750817 57750817 C T PLK2 Missense_Mutation p.R596Q 0.22 tolerated(0.49) benign(0.006) TCGA-06-5416-01 5 58273089 58273089 C A PDE4D Nonsense_Mutation p.E546* 0.24 TCGA-06-5416-01 5 59064147 59064147 G T PDE4D Intron 0.19 TCGA-06-5416-01 5 59064222 59064222 C T PDE4D Intron 0.19 TCGA-06-5416-01 5 59064302 59064302 C A PDE4D Intron 0.17 TCGA-06-5416-01 5 59934678 59934678 C A DEPDC1B Missense_Mutation p.G266V 0.16 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 5 60050521 60050521 C T ELOVL7 Missense_Mutation p.R259H 0.24 tolerated(0.33) benign(0.003) TCGA-06-5416-01 5 60050642 60050642 C T ELOVL7 Missense_Mutation p.A219T 0.17 tolerated(0.97) benign(0) TCGA-06-5416-01 5 60053441 60053441 A G ELOVL7 Silent p.N177N 0.44 TCGA-06-5416-01 5 60198315 60198315 C T ERCC8 Missense_Mutation p.A191T 0.17 tolerated(0.15) benign(0.113) TCGA-06-5416-01 5 61661170 61661170 G A KIF2A Missense_Mutation p.R523H 0.44 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 5 61785956 61785956 G A IPO11 Missense_Mutation p.G498R 0.17 tolerated(0.07) probably_damaging(0.976) TCGA-06-5416-01 5 61800711 61800711 G T IPO11 Missense_Mutation p.D591Y 0.32 deleterious(0) possibly_damaging(0.865) TCGA-06-5416-01 5 61832528 61832528 G A IPO11 Splice_Site p.X737_splice 0.13 TCGA-06-5416-01 5 61846291 61846291 T C IPO11 Splice_Site p.X822_splice 0.23 TCGA-06-5416-01 5 61887498 61887498 G T IPO11 Missense_Mutation p.D933Y 0.25 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 5 63256573 63256573 T G HTR1A Missense_Mutation p.N325T 0.20 tolerated(0.26) possibly_damaging(0.61) TCGA-06-5416-01 5 6374449 6374449 G A MED10 Silent p.I99I 0.43 TCGA-06-5416-01 5 64020206 64020206 C A SREK1IP1 3'UTR 0.23 TCGA-06-5416-01 5 64036941 64036941 C A SREK1IP1 Nonsense_Mutation p.E50* 0.17 TCGA-06-5416-01 5 64064831 64064831 C A CWC27 5'UTR 0.52 TCGA-06-5416-01 5 64313991 64313991 C A CWC27 Nonsense_Mutation p.S421* 0.41 TCGA-06-5416-01 5 64850656 64850656 C T CENPK Missense_Mutation p.E27K 0.19 tolerated(0.05) benign(0.032) TCGA-06-5416-01 5 64906693 64906693 C A TRIM23 Nonsense_Mutation p.E275* 0.20 TCGA-06-5416-01 5 65320190 65320190 A C ERBB2IP Missense_Mutation p.E243D 0.18 deleterious(0.02) benign(0.116) TCGA-06-5416-01 5 65321692 65321692 G T ERBB2IP Nonsense_Mutation p.E303* 0.33 TCGA-06-5416-01 5 65350750 65350750 C T ERBB2IP Nonsense_Mutation p.R1202* 0.48 TCGA-06-5416-01 5 6605471 6605471 C T NSUN2 Missense_Mutation p.R551Q 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 6625725 6625725 C T NSUN2 Silent p.S139S 0.17 TCGA-06-5416-01 5 6632730 6632730 C A NSUN2 Missense_Mutation p.R79I 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 5 66426117 66426117 C T MAST4 Nonsense_Mutation p.R609* 0.46 TCGA-06-5416-01 5 66459489 66459489 C T MAST4 Silent p.C1494C 0.40 TCGA-06-5416-01 5 66460992 66460992 G A MAST4 Silent p.E1995E 0.24 TCGA-06-5416-01 5 6662946 6662946 G A SRD5A1 Missense_Mutation p.V194I 0.15 tolerated(0.12) possibly_damaging(0.787) TCGA-06-5416-01 5 6668512 6668512 T G SRD5A1 3'UTR 0.29 TCGA-06-5416-01 5 6743922 6743922 G A PAPD7 Missense_Mutation p.S155N 0.19 deleterious(0.02) possibly_damaging(0.881) TCGA-06-5416-01 5 6750457 6750457 G T PAPD7 Missense_Mutation p.K317N 0.39 tolerated(0.47) benign(0.001) TCGA-06-5416-01 5 6750467 6750467 C T PAPD7 Nonsense_Mutation p.R321* 0.20 TCGA-06-5416-01 5 67591113 67591113 A G PIK3R1 Missense_Mutation p.D569G 0.45 deleterious(0) probably_damaging(0.975) TCGA-06-5416-01 5 68399909 68399909 A G SLC30A5 Intron 0.62 TCGA-06-5416-01 5 68425469 68425469 G T SLC30A5 3'UTR 0.39 TCGA-06-5416-01 5 68581195 68581195 G T CCDC125 Missense_Mutation p.P400H 0.21 tolerated(0.05) probably_damaging(0.996) TCGA-06-5416-01 5 68616180 68616180 G A CCDC125 Missense_Mutation p.P63L 0.21 deleterious(0.04) benign(0.003) TCGA-06-5416-01 5 68616203 68616203 C A CCDC125 Missense_Mutation p.K55N 0.44 tolerated(0.06) benign(0.103) TCGA-06-5416-01 5 68651492 68651492 C T TAF9 Missense_Mutation p.E104K 0.23 tolerated(0.32) benign(0.001) TCGA-06-5416-01 5 68682266 68682266 C T RAD17 Nonsense_Mutation p.R301* 0.39 TCGA-06-5416-01 5 68687660 68687660 G T RAD17 Nonsense_Mutation p.E348* 0.15 TCGA-06-5416-01 5 68715427 68715427 C T MARVELD2 Missense_Mutation p.A72V 0.23 deleterious(0.01) possibly_damaging(0.716) TCGA-06-5416-01 5 68737408 68737408 A C MARVELD2 Missense_Mutation p.K535T 0.47 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 5 68804974 68804974 G A OCLN Silent p.P19P 0.41 TCGA-06-5416-01 5 69372408 69372408 C A SMN2 Intron 0.39 TCGA-06-5416-01 5 70759924 70759924 G A BDP1 Silent p.S213S 0.18 TCGA-06-5416-01 5 70782334 70782334 G A BDP1 Missense_Mutation p.D365N 0.14 tolerated(0.17) probably_damaging(0.999) TCGA-06-5416-01 5 70793145 70793145 C A BDP1 Missense_Mutation p.F616L 0.19 tolerated(1) benign(0.002) TCGA-06-5416-01 5 70805501 70805501 T C BDP1 Missense_Mutation p.V861A 0.47 tolerated(0.63) possibly_damaging(0.469) TCGA-06-5416-01 5 70806562 70806562 G T BDP1 Nonsense_Mutation p.E1215* 0.19 TCGA-06-5416-01 5 70808134 70808134 G T BDP1 Nonsense_Mutation p.E1376* 0.20 TCGA-06-5416-01 5 70808163 70808163 G A BDP1 Silent p.K1385K 0.23 TCGA-06-5416-01 5 70812056 70812056 G A BDP1 Silent p.T1606T 0.59 TCGA-06-5416-01 5 70819778 70819778 G A BDP1 Silent p.P1800P 0.42 TCGA-06-5416-01 5 70820061 70820061 G A BDP1 Missense_Mutation p.E1895K 0.41 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 5 70840213 70840213 G T BDP1 Nonsense_Mutation p.E2148* 0.46 TCGA-06-5416-01 5 70845417 70845417 G A BDP1 Missense_Mutation p.E2327K 0.18 tolerated(0.09) possibly_damaging(0.795) TCGA-06-5416-01 5 70927969 70927969 G T MCCC2 Nonsense_Mutation p.E254* 0.19 TCGA-06-5416-01 5 71490655 71490655 G A MAP1B Silent p.G491G 0.18 TCGA-06-5416-01 5 71492673 71492673 A C MAP1B Missense_Mutation p.K1164T 0.23 probably_damaging(0.997) TCGA-06-5416-01 5 71493458 71493458 G A MAP1B Missense_Mutation p.E1426K 0.38 benign(0.194) TCGA-06-5416-01 5 71495213 71495213 A G MAP1B Missense_Mutation p.T2011A 0.20 possibly_damaging(0.654) TCGA-06-5416-01 5 71499604 71499604 G T MAP1B Missense_Mutation p.K2409N 0.20 probably_damaging(0.961) TCGA-06-5416-01 5 71524172 71524172 A G MRPS27 Silent p.G205G 0.13 TCGA-06-5416-01 5 71529958 71529958 C A MRPS27 Nonsense_Mutation p.E155* 0.17 TCGA-06-5416-01 5 71756240 71756240 C A ZNF366 Missense_Mutation p.G362W 0.29 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 5 71757240 71757240 G A ZNF366 Silent p.C28C 0.25 TCGA-06-5416-01 5 72370579 72370579 G A FCHO2 Silent p.R530R 0.11 TCGA-06-5416-01 5 72419394 72419394 C T TMEM171 Missense_Mutation p.A65V 0.24 tolerated(0.55) benign(0.067) TCGA-06-5416-01 5 72419668 72419668 G A TMEM171 Silent p.R156R 0.26 TCGA-06-5416-01 5 72800186 72800186 G T BTF3 Missense_Mutation p.A178S 0.47 tolerated(0.06) benign(0.178) TCGA-06-5416-01 5 72864293 72864293 C T UTP15 Nonsense_Mutation p.R78* 0.42 TCGA-06-5416-01 5 73045682 73045682 G A ARHGEF28 Silent p.A18A 0.36 TCGA-06-5416-01 5 73048753 73048753 G A ARHGEF28 Silent p.T67T 0.24 TCGA-06-5416-01 5 73190343 73190343 C T ARHGEF28 Missense_Mutation p.P1262S 0.45 deleterious(0) benign(0.082) TCGA-06-5416-01 5 74017393 74017393 C T GFM2 3'UTR 0.20 TCGA-06-5416-01 5 74026174 74026174 C T GFM2 Missense_Mutation p.R546Q 0.44 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 5 74032658 74032658 G T GFM2 Missense_Mutation p.F491L 0.21 tolerated(0.06) probably_damaging(0.998) TCGA-06-5416-01 5 74034374 74034374 G A GFM2 Silent p.G391G 0.21 TCGA-06-5416-01 5 7414794 7414794 C T ADCY2 Missense_Mutation p.R107C 0.49 deleterious(0.01) possibly_damaging(0.899) TCGA-06-5416-01 5 74647398 74647398 G T HMGCR Nonsense_Mutation p.E447* 0.35 TCGA-06-5416-01 5 74677854 74677854 G A COL4A3BP Nonsense_Mutation p.R641* 0.49 TCGA-06-5416-01 5 74865199 74865199 G A POLK Missense_Mutation p.R97Q 0.38 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 5 74988242 74988242 G A POC5 Silent p.G258G 0.45 TCGA-06-5416-01 5 75597308 75597308 G A SV2C Silent p.L646L 0.45 TCGA-06-5416-01 5 75621374 75621374 G A SV2C 3'UTR 0.15 TCGA-06-5416-01 5 75757405 75757405 C T IQGAP2 Silent p.D19D 0.17 TCGA-06-5416-01 5 75871544 75871544 C A IQGAP2 Silent p.V136V 0.37 TCGA-06-5416-01 5 75886317 75886317 C T IQGAP2 Missense_Mutation p.A242V 0.42 tolerated(0.11) possibly_damaging(0.756) TCGA-06-5416-01 5 75932998 75932998 C T IQGAP2 Silent p.I640I 0.42 TCGA-06-5416-01 5 75948647 75948647 T G IQGAP2 Missense_Mutation p.S723A 0.52 tolerated(1) benign(0.012) TCGA-06-5416-01 5 75964538 75964538 C T IQGAP2 Silent p.F904F 0.37 TCGA-06-5416-01 5 75973160 75973160 C T IQGAP2 Silent p.I1215I 0.37 TCGA-06-5416-01 5 76129449 76129449 C T F2RL1 Silent p.I339I 0.66 TCGA-06-5416-01 5 76171200 76171200 G A S100Z Missense_Mutation p.E6K 0.42 deleterious(0.04) benign(0.089) TCGA-06-5416-01 5 76621534 76621534 C T PDE8B Silent p.F190F 0.42 TCGA-06-5416-01 5 76700580 76700580 G T PDE8B Nonsense_Mutation p.E416* 0.40 TCGA-06-5416-01 5 76714072 76714072 G A PDE8B Missense_Mutation p.D644N 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 76734176 76734176 G A WDR41 Missense_Mutation p.A298V 0.45 deleterious(0.04) benign(0.007) TCGA-06-5416-01 5 77473172 77473172 C T AP3B1 Missense_Mutation p.R344H 0.22 deleterious(0.04) benign(0.315) TCGA-06-5416-01 5 77590355 77590355 C T AP3B1 Missense_Mutation p.A17T 0.17 tolerated(0.61) benign(0.053) TCGA-06-5416-01 5 7816988 7816988 C T ADCY2 Missense_Mutation p.R965W 0.20 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 78181427 78181427 G A ARSB Silent p.F374F 0.48 TCGA-06-5416-01 5 78181606 78181606 G A ARSB Nonsense_Mutation p.R315* 0.23 TCGA-06-5416-01 5 78264877 78264877 A G ARSB Missense_Mutation p.Y151H 0.46 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 5 7831902 7831902 C T C5orf49 3'UTR 0.42 TCGA-06-5416-01 5 78320122 78320122 C A DMGDH Missense_Mutation p.G741V 0.16 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 5 78329163 78329163 G T DMGDH Missense_Mutation p.P421H 0.41 deleterious(0.04) possibly_damaging(0.635) TCGA-06-5416-01 5 78338269 78338269 G A DMGDH Nonsense_Mutation p.R344* 0.21 TCGA-06-5416-01 5 78379065 78379065 A C BHMT2 Missense_Mutation p.K217Q 0.19 tolerated(0.36) benign(0.007) TCGA-06-5416-01 5 78417161 78417161 G A BHMT Missense_Mutation p.E200K 0.18 deleterious(0.01) benign(0.041) TCGA-06-5416-01 5 78610672 78610672 G T JMY Missense_Mutation p.R886I 0.24 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 5 78671873 78671873 C A HOMER1 Nonsense_Mutation p.E342* 0.16 TCGA-06-5416-01 5 79025289 79025289 C T CMYA5 Missense_Mutation p.S234L 0.22 possibly_damaging(0.602) TCGA-06-5416-01 5 79026695 79026695 C T CMYA5 Missense_Mutation p.P703S 0.19 benign(0.141) TCGA-06-5416-01 5 79028880 79028880 C T CMYA5 Missense_Mutation p.S1431F 0.46 probably_damaging(0.979) TCGA-06-5416-01 5 79031371 79031371 C T CMYA5 Silent p.N2261N 0.18 TCGA-06-5416-01 5 79032977 79032977 C T CMYA5 Missense_Mutation p.R2797C 0.15 benign(0.326) TCGA-06-5416-01 5 79033166 79033166 G A CMYA5 Missense_Mutation p.D2860N 0.20 benign(0.098) TCGA-06-5416-01 5 79089298 79089298 G A CMYA5 Missense_Mutation p.G3943D 0.20 probably_damaging(1) TCGA-06-5416-01 5 79363807 79363807 C A THBS4 Silent p.R402R 0.24 TCGA-06-5416-01 5 79378946 79378946 C T THBS4 Silent p.F956F 0.46 TCGA-06-5416-01 5 79465335 79465335 C T SERINC5 Missense_Mutation p.A196T 0.49 tolerated(0.1) benign(0.358) TCGA-06-5416-01 5 79732737 79732737 G A ZFYVE16 Missense_Mutation p.S78N 0.25 tolerated(0.49) benign(0.001) TCGA-06-5416-01 5 79854201 79854201 G A ANKRD34B 3'UTR 0.14 TCGA-06-5416-01 5 79945224 79945224 G T DHFR Missense_Mutation p.L76I 0.16 deleterious(0.01) possibly_damaging(0.641) TCGA-06-5416-01 5 80083427 80083427 C A MSH3 Missense_Mutation p.H827N 0.18 tolerated(0.11) possibly_damaging(0.665) TCGA-06-5416-01 5 80160667 80160667 G A MSH3 Silent p.P1012P 0.21 TCGA-06-5416-01 5 80171714 80171714 G A MSH3 3'UTR 0.29 TCGA-06-5416-01 5 80381628 80381628 G T RASGRF2 Missense_Mutation p.R390I 0.20 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 5 80382767 80382767 G A RASGRF2 Missense_Mutation p.R462H 0.40 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 5 80388641 80388641 C T RASGRF2 Missense_Mutation p.S471F 0.17 tolerated(0.09) possibly_damaging(0.896) TCGA-06-5416-01 5 80408640 80408640 G A RASGRF2 Missense_Mutation p.D684N 0.31 tolerated(0.13) probably_damaging(0.956) TCGA-06-5416-01 5 80511711 80511711 A G RASGRF2 Missense_Mutation p.D1124G 0.11 deleterious(0) possibly_damaging(0.751) TCGA-06-5416-01 5 80551009 80551009 G A CKMT2 Silent p.E215E 0.23 TCGA-06-5416-01 5 80553652 80553652 C T CKMT2 Nonsense_Mutation p.R286* 0.24 TCGA-06-5416-01 5 80681601 80681601 C T ACOT12 Missense_Mutation p.D58N 0.16 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 5 814893 814893 C T ZDHHC11 Silent p.P388P 0.31 TCGA-06-5416-01 5 81614110 81614110 C A ATP6AP1L Silent p.I222I 0.41 TCGA-06-5416-01 5 82400754 82400754 A G XRCC4 Missense_Mutation p.S6G 0.35 tolerated(0.18) probably_damaging(0.952) TCGA-06-5416-01 5 82815503 82815503 C T VCAN Missense_Mutation p.L460F 0.25 tolerated(0.86) benign(0.114) TCGA-06-5416-01 5 82816580 82816580 G T VCAN Nonsense_Mutation p.E819* 0.19 TCGA-06-5416-01 5 82833070 82833070 C T VCAN Silent p.L1416L 0.53 TCGA-06-5416-01 5 82834314 82834314 T C VCAN Missense_Mutation p.V1831A 0.49 tolerated(0.14) benign(0.013) TCGA-06-5416-01 5 82835861 82835861 G A VCAN Missense_Mutation p.A2347T 0.20 tolerated(0.37) benign(0.024) TCGA-06-5416-01 5 82940426 82940426 C T HAPLN1 Silent p.A177A 0.50 TCGA-06-5416-01 5 82948376 82948376 G T HAPLN1 Missense_Mutation p.S123Y 0.45 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 83239165 83239165 G T EDIL3 3'UTR 0.17 TCGA-06-5416-01 5 850795 850795 G T ZDHHC11 5'UTR 0.32 TCGA-06-5416-01 5 85913805 85913805 C T COX7C 5'UTR 0.42 TCGA-06-5416-01 5 86703976 86703976 T G CCNH Missense_Mutation p.K114N 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 89791493 89791493 G T POLR3G Splice_Site p.X83_splice 0.19 TCGA-06-5416-01 5 89921051 89921051 C T GPR98 Silent p.L221L 0.25 TCGA-06-5416-01 5 89925343 89925343 A C GPR98 Missense_Mutation p.H609P 0.40 possibly_damaging(0.703) TCGA-06-5416-01 5 89938532 89938532 G A GPR98 Missense_Mutation p.G774R 0.22 probably_damaging(0.979) TCGA-06-5416-01 5 89939707 89939707 C A GPR98 Missense_Mutation p.L881M 0.46 possibly_damaging(0.86) TCGA-06-5416-01 5 89943381 89943381 T C GPR98 Missense_Mutation p.V1030A 0.50 benign(0.005) TCGA-06-5416-01 5 89999484 89999484 G T GPR98 Nonsense_Mutation p.E2720* 0.39 TCGA-06-5416-01 5 90008197 90008198 - T GPR98 Frame_Shift_Ins p.L3047Ffs*23 0.16 TCGA-06-5416-01 5 90124984 90124984 C A GPR98 Missense_Mutation p.S5531Y 0.23 possibly_damaging(0.831) TCGA-06-5416-01 5 90136530 90136530 C T GPR98 Missense_Mutation p.P5583S 0.19 possibly_damaging(0.857) TCGA-06-5416-01 5 90144548 90144548 A G GPR98 Missense_Mutation p.D5705G 0.14 possibly_damaging(0.811) TCGA-06-5416-01 5 90261271 90261271 G A GPR98 Missense_Mutation p.A5966T 0.38 benign(0) TCGA-06-5416-01 5 90368305 90368305 C A GPR98 Missense_Mutation p.A6065D 0.22 probably_damaging(0.975) TCGA-06-5416-01 5 90398056 90398056 C A GPR98 Missense_Mutation p.L6111I 0.19 possibly_damaging(0.874) TCGA-06-5416-01 5 90670037 90670037 G A ARRDC3 Silent p.I309I 0.45 TCGA-06-5416-01 5 90679055 90679055 T C ARRDC3 5'UTR 0.30 TCGA-06-5416-01 5 9154665 9154665 G A SEMA5A Silent p.F472F 0.17 TCGA-06-5416-01 5 93217199 93217199 C A FAM172A Nonsense_Mutation p.E255* 0.18 TCGA-06-5416-01 5 9379997 9379997 T C SEMA5A Missense_Mutation p.H21R 0.23 tolerated_low_confidence(0.56) benign(0) TCGA-06-5416-01 5 94204092 94204092 G A MCTP1 Silent p.Y794Y 0.21 TCGA-06-5416-01 5 94207064 94207064 G A MCTP1 Nonsense_Mutation p.R699* 0.41 TCGA-06-5416-01 5 94727207 94727207 C A FAM81B Silent p.I38I 0.23 TCGA-06-5416-01 5 94749725 94749725 G A FAM81B Missense_Mutation p.R123H 0.18 tolerated(0.05) benign(0.424) TCGA-06-5416-01 5 94782297 94782297 G T FAM81B Nonsense_Mutation p.E309* 0.17 TCGA-06-5416-01 5 94820445 94820445 C T TTC37 Missense_Mutation p.E1346K 0.16 tolerated(0.25) possibly_damaging(0.905) TCGA-06-5416-01 5 94845341 94845341 C T TTC37 Missense_Mutation p.E991K 0.40 deleterious(0) probably_damaging(0.915) TCGA-06-5416-01 5 94861125 94861125 C A TTC37 Missense_Mutation p.K434N 0.39 tolerated(0.29) possibly_damaging(0.685) TCGA-06-5416-01 5 94936712 94936712 C T ARSK Nonsense_Mutation p.R420* 0.42 TCGA-06-5416-01 5 94936743 94936743 C T ARSK Missense_Mutation p.S430L 0.20 tolerated(0.05) benign(0.426) TCGA-06-5416-01 5 94939055 94939055 C A ARSK Missense_Mutation p.S479Y 0.24 tolerated(0.06) benign(0.008) TCGA-06-5416-01 5 95011329 95011329 C T SPATA9 Silent p.A55A 0.28 TCGA-06-5416-01 5 95018536 95018536 C T SPATA9 Nonsense_Mutation p.W8* 0.40 TCGA-06-5416-01 5 95091233 95091233 C A RHOBTB3 Silent p.I272I 0.37 TCGA-06-5416-01 5 95091450 95091450 C T RHOBTB3 Missense_Mutation p.R345C 0.17 deleterious(0.01) possibly_damaging(0.809) TCGA-06-5416-01 5 95103861 95103861 G A RHOBTB3 Missense_Mutation p.E425K 0.23 tolerated(1) benign(0.008) TCGA-06-5416-01 5 95152320 95152320 A G GLRX Missense_Mutation p.V73A 0.42 deleterious(0) possibly_damaging(0.602) TCGA-06-5416-01 5 95158343 95158343 G A GLRX Silent p.C8C 0.13 TCGA-06-5416-01 5 95224647 95224647 A C ELL2 Silent p.L617L 0.46 TCGA-06-5416-01 5 95226960 95226960 G A ELL2 Silent p.V536V 0.47 TCGA-06-5416-01 5 95234511 95234511 G A ELL2 Missense_Mutation p.R320W 0.40 deleterious(0.03) probably_damaging(0.948) TCGA-06-5416-01 5 95728579 95728579 G T PCSK1 3'UTR 0.21 TCGA-06-5416-01 5 95735871 95735871 C T PCSK1 Missense_Mutation p.D406N 0.20 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 5 96058409 96058409 A C CAST Intron 0.23 TCGA-06-5416-01 5 96078455 96078455 G A CAST Missense_Mutation p.D358N 0.20 tolerated(0.14) benign(0.167) TCGA-06-5416-01 5 96079350 96079350 C T CAST Intron 0.19 TCGA-06-5416-01 5 96079433 96079433 C T CAST Intron 0.17 TCGA-06-5416-01 5 96098866 96098866 G T ERAP1 3'UTR 0.13 TCGA-06-5416-01 5 96124241 96124241 C T ERAP1 Missense_Mutation p.D558N 0.33 tolerated(0.15) benign(0.006) TCGA-06-5416-01 5 96215681 96215681 G A ERAP2 Missense_Mutation p.E98K 0.20 tolerated(0.15) possibly_damaging(0.851) TCGA-06-5416-01 5 96228074 96228074 T C ERAP2 Missense_Mutation p.S348P 0.22 deleterious(0.01) probably_damaging(0.969) TCGA-06-5416-01 5 96232138 96232138 G A ERAP2 Missense_Mutation p.R434H 0.54 tolerated(1) benign(0.034) TCGA-06-5416-01 5 96253303 96253303 T A ERAP2 Missense_Mutation p.N959K 0.23 deleterious(0.01) benign(0.02) TCGA-06-5416-01 5 9629272 9629272 G A TAS2R1 Silent p.F291F 0.17 TCGA-06-5416-01 5 9629906 9629906 G A TAS2R1 Missense_Mutation p.A80V 0.21 tolerated(0.14) benign(0.01) TCGA-06-5416-01 5 9629925 9629925 C A TAS2R1 Nonsense_Mutation p.E74* 0.44 TCGA-06-5416-01 5 96329598 96329598 C A LNPEP Missense_Mutation p.L444M 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 96329676 96329676 G A LNPEP Splice_Site p.X469_splice 0.45 TCGA-06-5416-01 5 96430343 96430343 G A LIX1 3'UTR 0.30 TCGA-06-5416-01 5 96430573 96430573 C T LIX1 Missense_Mutation p.R243Q 0.14 deleterious(0) possibly_damaging(0.738) TCGA-06-5416-01 5 98106356 98106356 G A RGMB 5'UTR 0.32 TCGA-06-5416-01 5 98199173 98199173 C A CHD1 Missense_Mutation p.D1456Y 0.25 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 5 98199268 98199268 A G CHD1 Missense_Mutation p.V1424A 0.07 tolerated(0.06) benign(0.095) TCGA-06-5416-01 5 98205529 98205529 T G CHD1 Missense_Mutation p.K1346Q 0.23 tolerated(0.24) benign(0.002) TCGA-06-5416-01 5 98209302 98209302 C T CHD1 Missense_Mutation p.R1189Q 0.31 tolerated(0.34) benign(0.001) TCGA-06-5416-01 5 98218843 98218843 C A CHD1 Missense_Mutation p.Q889H 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 5 98230354 98230354 G A CHD1 Missense_Mutation p.R583W 0.17 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 5 98232906 98232906 G T CHD1 Missense_Mutation p.S495Y 0.25 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 6 100062330 100062330 C A PRDM13 Missense_Mutation p.L607M 0.28 tolerated(0.08) possibly_damaging(0.707) TCGA-06-5416-01 6 100838550 100838550 G A SIM1 Missense_Mutation p.S663L 0.25 deleterious_low_confidence(0) possibly_damaging(0.448) TCGA-06-5416-01 6 100841385 100841385 G A SIM1 Silent p.I516I 0.22 TCGA-06-5416-01 6 100960700 100960700 G T ASCC3 Missense_Mutation p.S2057Y 0.64 deleterious(0.04) benign(0.094) TCGA-06-5416-01 6 101075534 101075534 T C ASCC3 Missense_Mutation p.H1525R 0.29 deleterious(0) possibly_damaging(0.533) TCGA-06-5416-01 6 101311963 101311963 A G ASCC3 Missense_Mutation p.I73T 0.61 deleterious(0.01) benign(0.03) TCGA-06-5416-01 6 102130454 102130454 A C GRIK2 Missense_Mutation p.E250D 0.32 tolerated(0.39) possibly_damaging(0.5) TCGA-06-5416-01 6 102376450 102376450 A G GRIK2 Silent p.K676K 0.28 TCGA-06-5416-01 6 10402840 10402840 C T TFAP2A Silent p.A256A 0.54 TCGA-06-5416-01 6 10410403 10410403 C A TFAP2A Missense_Mutation p.D71Y 0.25 tolerated(0.1) probably_damaging(0.999) TCGA-06-5416-01 6 105233085 105233085 T C HACE1 Missense_Mutation p.Q395R 0.33 tolerated(0.13) benign(0.006) TCGA-06-5416-01 6 10529465 10529465 C T GCNT2 Silent p.F107F 0.55 TCGA-06-5416-01 6 10529483 10529483 C T GCNT2 Silent p.L113L 0.24 TCGA-06-5416-01 6 105771590 105771590 G A PREP Nonsense_Mutation p.R423* 0.28 TCGA-06-5416-01 6 10586670 10586670 G A GCNT2 Intron 0.20 TCGA-06-5416-01 6 106553352 106553352 C A PRDM1 Silent p.L439L 0.26 TCGA-06-5416-01 6 106555074 106555074 G A PRDM1 Missense_Mutation p.E731K 0.59 deleterious(0.01) probably_damaging(0.98) TCGA-06-5416-01 6 107006397 107006397 G T AIM1 Nonsense_Mutation p.E1510* 0.31 TCGA-06-5416-01 6 107035704 107035704 G T RTN4IP1 Silent p.S280S 0.25 TCGA-06-5416-01 6 107076875 107076875 C T RTN4IP1 Missense_Mutation p.V8I 0.25 tolerated_low_confidence(0.17) benign(0.002) TCGA-06-5416-01 6 107372507 107372507 A G C6orf203 3'UTR 0.24 TCGA-06-5416-01 6 107390234 107390234 G A BEND3 Silent p.L721L 0.34 TCGA-06-5416-01 6 10764587 10764587 G T MAK 3'UTR 0.47 TCGA-06-5416-01 6 10804098 10804098 C A MAK Missense_Mutation p.R173I 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 108250702 108250702 C A SEC63 Missense_Mutation p.K47N 0.35 tolerated(0.13) benign(0.053) TCGA-06-5416-01 6 108370595 108370595 G A OSTM1 Nonsense_Mutation p.R271* 0.33 TCGA-06-5416-01 6 108395597 108395597 G A OSTM1 Missense_Mutation p.L87F 0.35 deleterious(0.01) benign(0.378) TCGA-06-5416-01 6 108497768 108497768 C T NR2E1 Silent p.F107F 0.56 TCGA-06-5416-01 6 108533256 108533256 T C SNX3 3'UTR 0.77 TCGA-06-5416-01 6 108668245 108668245 T C LACE1 Splice_Site p.X139_splice 0.53 TCGA-06-5416-01 6 108984964 108984964 C T FOXO3 Missense_Mutation p.R310C 0.39 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 6 109258196 109258196 G T ARMC2 Missense_Mutation p.K530N 0.36 deleterious(0.02) benign(0.016) TCGA-06-5416-01 6 109308624 109308624 G A SESN1 3'UTR 0.21 TCGA-06-5416-01 6 109309847 109309847 G A SESN1 Missense_Mutation p.R490C 0.25 deleterious(0.02) benign(0.035) TCGA-06-5416-01 6 109481833 109481833 G A CEP57L1 Missense_Mutation p.D359N 0.63 deleterious(0.03) benign(0.176) TCGA-06-5416-01 6 109766659 109766659 C T MICAL1 Missense_Mutation p.R916H 0.24 tolerated(0.11) benign(0.051) TCGA-06-5416-01 6 109797424 109797424 A C ZBTB24 Nonsense_Mutation p.Y386* 0.30 TCGA-06-5416-01 6 109802763 109802763 T C ZBTB24 Missense_Mutation p.D156G 0.22 tolerated(0.07) benign(0.002) TCGA-06-5416-01 6 10984139 10984139 T C ELOVL2 Missense_Mutation p.T256A 0.20 tolerated(0.32) benign(0.094) TCGA-06-5416-01 6 109871549 109871549 G T AK9 Intron 0.23 TCGA-06-5416-01 6 109995420 109995420 C A AK9 Missense_Mutation p.W54C 0.19 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 6 110037748 110037748 C T FIG4 Missense_Mutation p.A89V 0.25 tolerated(0.52) benign(0.008) TCGA-06-5416-01 6 110064416 110064416 C T FIG4 Missense_Mutation p.S327F 0.29 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 6 110083389 110083389 G A FIG4 Missense_Mutation p.S456N 0.20 tolerated(0.45) benign(0) TCGA-06-5416-01 6 110107514 110107514 C A FIG4 Missense_Mutation p.A653D 0.26 tolerated(0.53) benign(0.004) TCGA-06-5416-01 6 110107519 110107519 A C FIG4 Missense_Mutation p.N655H 0.32 tolerated(0.06) possibly_damaging(0.497) TCGA-06-5416-01 6 110448756 110448756 C A WASF1 Missense_Mutation p.A17S 0.27 deleterious(0.03) unknown(0) TCGA-06-5416-01 6 110777480 110777480 C A SLC22A16 Intron 0.77 TCGA-06-5416-01 6 110777825 110777825 C T SLC22A16 Missense_Mutation p.R150Q 0.27 tolerated(0.4) benign(0.277) TCGA-06-5416-01 6 111136378 111136378 G A CDK19 5'UTR 0.43 TCGA-06-5416-01 6 111320972 111320972 C A RPF2 Silent p.V125V 0.27 TCGA-06-5416-01 6 111631150 111631150 G T REV3L Missense_Mutation p.T2983N 0.22 tolerated(0.07) probably_damaging(0.974) TCGA-06-5416-01 6 111680177 111680177 C T REV3L Missense_Mutation p.R2307Q 0.57 tolerated(0.08) probably_damaging(0.999) TCGA-06-5416-01 6 111694855 111694855 T C REV3L Missense_Mutation p.N1568S 0.57 tolerated_low_confidence(0.27) benign(0.05) TCGA-06-5416-01 6 111696587 111696587 G T REV3L Missense_Mutation p.L991I 0.25 deleterious(0.01) probably_damaging(0.956) TCGA-06-5416-01 6 111804029 111804029 A G REV3L Silent p.D21D 0.25 TCGA-06-5416-01 6 111804031 111804031 C A REV3L Missense_Mutation p.D21Y 0.21 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 6 11193846 11193846 G T NEDD9 Missense_Mutation p.P180H 0.31 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 6 11232812 11232812 C T NEDD9 5'UTR 0.38 TCGA-06-5416-01 6 112393987 112393987 A C TUBE1 Missense_Mutation p.I356M 0.31 tolerated(0.27) benign(0.108) TCGA-06-5416-01 6 112528268 112528268 G A LAMA4 Missense_Mutation p.P126S 0.57 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 6 112671393 112671393 C T RFPL4B Silent p.G161G 0.50 TCGA-06-5416-01 6 112671830 112671830 T G RFPL4B 3'UTR 0.32 TCGA-06-5416-01 6 114378703 114378703 G A HS3ST5 Silent p.V253V 0.27 TCGA-06-5416-01 6 116579888 116579888 C T TSPYL4 5'Flank 0.26 TCGA-06-5416-01 6 116600699 116600699 C T TSPYL1 Missense_Mutation p.E99K 0.30 tolerated(0.22) benign(0.021) TCGA-06-5416-01 6 116757662 116757662 C T DSE Silent p.H677H 0.27 TCGA-06-5416-01 6 116879140 116879140 G A FAM26D Silent p.E94E 0.32 TCGA-06-5416-01 6 116948845 116948845 T G RSPH4A Silent p.A325A 0.23 TCGA-06-5416-01 6 117013530 117013530 G T KPNA5 Missense_Mutation p.Q105H 0.20 tolerated(0.08) possibly_damaging(0.744) TCGA-06-5416-01 6 117113560 117113560 C A GPRC6A Missense_Mutation p.E842D 0.19 tolerated(0.1) benign(0.053) TCGA-06-5416-01 6 117113624 117113624 G A GPRC6A Missense_Mutation p.S821F 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 117243256 117243256 C T RFX6 Missense_Mutation p.A460V 0.29 deleterious(0.02) probably_damaging(0.98) TCGA-06-5416-01 6 117609814 117609814 C A ROS1 Missense_Mutation p.Q2295H 0.31 deleterious_low_confidence(0.01) benign(0.235) TCGA-06-5416-01 6 117641076 117641076 C A ROS1 Silent p.V1965V 0.22 TCGA-06-5416-01 6 117658378 117658378 C T ROS1 Silent p.T1735T 0.45 TCGA-06-5416-01 6 117687436 117687436 A G ROS1 Missense_Mutation p.I872T 0.29 deleterious(0.04) possibly_damaging(0.907) TCGA-06-5416-01 6 117687446 117687446 C T ROS1 Missense_Mutation p.D869N 0.32 tolerated(0.57) benign(0.004) TCGA-06-5416-01 6 117859970 117859970 C T DCBLD1 Silent p.I316I 0.31 TCGA-06-5416-01 6 117890936 117890936 T G DCBLD1 3'UTR 0.31 TCGA-06-5416-01 6 12120616 12120616 C T HIVEP1 Silent p.F196F 0.28 TCGA-06-5416-01 6 12121900 12121900 G A HIVEP1 Silent p.Q624Q 0.24 TCGA-06-5416-01 6 12122012 12122012 C T HIVEP1 Missense_Mutation p.L662F 0.59 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 6 121433733 121433733 T G TBC1D32 Missense_Mutation p.K1081T 0.23 tolerated(0.35) benign(0.149) TCGA-06-5416-01 6 121433781 121433781 C T TBC1D32 Missense_Mutation p.G1065D 0.14 deleterious(0.05) probably_damaging(0.927) TCGA-06-5416-01 6 121482144 121482144 G A TBC1D32 Missense_Mutation p.L877F 0.32 deleterious(0.03) benign(0.105) TCGA-06-5416-01 6 121768948 121768948 C T GJA1 Nonsense_Mutation p.R319* 0.29 TCGA-06-5416-01 6 122734703 122734703 C T HSF2 Missense_Mutation p.R122C 0.25 tolerated(0.14) benign(0.021) TCGA-06-5416-01 6 122743998 122743998 C T HSF2 Silent p.L322L 0.19 TCGA-06-5416-01 6 122753394 122753394 A G HSF2 3'UTR 0.34 TCGA-06-5416-01 6 123539632 123539632 A C TRDN 3'UTR 0.19 TCGA-06-5416-01 6 123892136 123892136 G A TRDN Missense_Mutation p.A55V 0.21 deleterious_low_confidence(0) possibly_damaging(0.472) TCGA-06-5416-01 6 124979498 124979498 A G NKAIN2 Missense_Mutation p.E147G 0.27 deleterious(0.02) benign(0.04) TCGA-06-5416-01 6 125232339 125232339 C T RP11-510H23.1 RNA 0.29 TCGA-06-5416-01 6 125252861 125252861 C T RP11-510H23.1 RNA 0.43 TCGA-06-5416-01 6 125584135 125584135 G T TPD52L1 3'UTR 0.42 TCGA-06-5416-01 6 126206441 126206441 C T NCOA7 Missense_Mutation p.A279V 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 126210198 126210198 G A NCOA7 Missense_Mutation p.R333Q 0.54 deleterious(0) probably_damaging(0.91) TCGA-06-5416-01 6 126242208 126242208 C T NCOA7 Silent p.I788I 0.15 TCGA-06-5416-01 6 126333995 126333995 A C TRMT11 Missense_Mutation p.K335T 0.56 tolerated(0.51) benign(0.003) TCGA-06-5416-01 6 127796503 127796503 C T SOGA3 Missense_Mutation p.D890N 0.28 deleterious(0) probably_damaging(0.97) TCGA-06-5416-01 6 127797091 127797091 C T SOGA3 Missense_Mutation p.D694N 0.26 deleterious(0.02) probably_damaging(0.917) TCGA-06-5416-01 6 129468122 129468122 G A LAMA2 Missense_Mutation p.D280N 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 129511466 129511466 G T LAMA2 Missense_Mutation p.Q528H 0.34 tolerated(0.08) benign(0.289) TCGA-06-5416-01 6 129513873 129513873 C T LAMA2 Nonsense_Mutation p.R553* 0.24 TCGA-06-5416-01 6 129687390 129687390 C A LAMA2 Missense_Mutation p.L1582I 0.23 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 6 129775387 129775387 G T LAMA2 Missense_Mutation p.D2221Y 0.42 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 6 129823857 129823857 C T LAMA2 Silent p.F2766F 0.33 TCGA-06-5416-01 6 129905215 129905215 G T ARHGAP18 Missense_Mutation p.L586I 0.21 tolerated(0.11) benign(0.272) TCGA-06-5416-01 6 130465740 130465740 G A SAMD3 Silent p.F496F 0.25 TCGA-06-5416-01 6 130761665 130761665 C A TMEM200A Missense_Mutation p.A33D 0.58 tolerated(0.11) benign(0.076) TCGA-06-5416-01 6 130762197 130762197 C T TMEM200A Silent p.I210I 0.27 TCGA-06-5416-01 6 131222296 131222296 C T EPB41L2 Silent p.R318R 0.27 TCGA-06-5416-01 6 131602856 131602856 A G AKAP7 Missense_Mutation p.N346S 0.36 tolerated(0.19) benign(0.005) TCGA-06-5416-01 6 131895300 131895300 A C ARG1 Intron 0.75 TCGA-06-5416-01 6 131910653 131910653 G T MED23 Missense_Mutation p.F1297L 0.62 tolerated(0.7) benign(0.009) TCGA-06-5416-01 6 131912560 131912560 G T MED23 Missense_Mutation p.F1193L 0.26 tolerated(0.11) benign(0.204) TCGA-06-5416-01 6 131915242 131915242 C T MED23 Missense_Mutation p.D1077N 0.48 tolerated(0.1) benign(0.252) TCGA-06-5416-01 6 131917741 131917741 G A MED23 Nonsense_Mutation p.R899* 0.63 TCGA-06-5416-01 6 131971276 131971276 C A ENPP3 Silent p.T88T 0.23 TCGA-06-5416-01 6 132030155 132030155 G A CTAGE9 Missense_Mutation p.A668V 0.70 deleterious(0.03) benign(0.06) TCGA-06-5416-01 6 132618377 132618377 G A MOXD1 Missense_Mutation p.S586F 0.27 deleterious(0) benign(0.009) TCGA-06-5416-01 6 132619047 132619047 G T MOXD1 Missense_Mutation p.S519Y 0.44 deleterious(0) possibly_damaging(0.907) TCGA-06-5416-01 6 132636773 132636773 C T MOXD1 Splice_Site p.X503_splice 0.53 TCGA-06-5416-01 6 132892012 132892012 A G TAAR6 Silent p.L184L 0.19 TCGA-06-5416-01 6 132910785 132910785 G A TAAR5 Missense_Mutation p.A14V 0.25 tolerated(0.68) benign(0.001) TCGA-06-5416-01 6 132938945 132938945 G T TAAR2 Missense_Mutation p.L134I 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 132966336 132966336 G T TAAR1 Silent p.I269I 0.58 TCGA-06-5416-01 6 132966417 132966417 T C TAAR1 Silent p.S242S 0.56 TCGA-06-5416-01 6 133049914 133049914 T G VNN3 Missense_Mutation p.D168A 0.22 deleterious(0.03) possibly_damaging(0.722) TCGA-06-5416-01 6 133802608 133802608 C T EYA4 Silent p.F326F 0.26 TCGA-06-5416-01 6 133802694 133802694 G A EYA4 Missense_Mutation p.G355D 0.30 deleterious(0.02) benign(0.419) TCGA-06-5416-01 6 13470383 13470383 T C AL583828.1 Missense_Mutation p.T44A 0.26 benign(0.388) TCGA-06-5416-01 6 135271223 135271223 G A ALDH8A1 5'UTR 0.29 TCGA-06-5416-01 6 135644437 135644437 G A AHI1 Missense_Mutation p.A1064V 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 135709056 135709056 A C AHI1 Intron 0.30 TCGA-06-5416-01 6 135748357 135748357 G T AHI1 Missense_Mutation p.F904L 0.51 tolerated(0.06) benign(0.351) TCGA-06-5416-01 6 135787171 135787171 C T AHI1 Missense_Mutation p.R177K 0.32 tolerated(0.31) benign(0.002) TCGA-06-5416-01 6 135811342 135811342 C T AHI1 Intron 0.50 TCGA-06-5416-01 6 136476879 136476879 C A PDE7B Missense_Mutation p.L232I 0.28 deleterious(0.03) possibly_damaging(0.535) TCGA-06-5416-01 6 136594257 136594257 C T BCLAF1 Missense_Mutation p.E641K 0.08 tolerated(0.09) possibly_damaging(0.486) TCGA-06-5416-01 6 136597514 136597514 G A BCLAF1 Silent p.Y383Y 0.09 TCGA-06-5416-01 6 136710620 136710620 G A MAP7 Nonsense_Mutation p.R116* 0.55 TCGA-06-5416-01 6 136913353 136913353 G A MAP3K5 Silent p.D1061D 0.61 TCGA-06-5416-01 6 137015347 137015347 C T MAP3K5 Missense_Mutation p.R395Q 0.55 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 6 137477919 137477919 G A IL22RA2 Silent p.F90F 0.57 TCGA-06-5416-01 6 138196106 138196106 C T TNFAIP3 Silent p.F140F 0.56 TCGA-06-5416-01 6 138413226 138413226 C T PERP Missense_Mutation p.D179N 0.24 tolerated(0.17) benign(0.091) TCGA-06-5416-01 6 138615205 138615205 G A KIAA1244 Silent p.S1148S 0.30 TCGA-06-5416-01 6 138655416 138655416 G A KIAA1244 Silent p.A1811A 0.43 TCGA-06-5416-01 6 138655582 138655582 G A KIAA1244 Missense_Mutation p.A1867T 0.20 tolerated_low_confidence(0.05) probably_damaging(0.987) TCGA-06-5416-01 6 138656143 138656143 C T KIAA1244 Silent p.L2054L 0.21 TCGA-06-5416-01 6 138734105 138734105 G A HEBP2 Missense_Mutation p.D170N 0.05 tolerated(0.52) benign(0.002) TCGA-06-5416-01 6 139170542 139170542 G A ECT2L Missense_Mutation p.G347E 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 139203933 139203933 G A ECT2L Silent p.T651T 0.32 TCGA-06-5416-01 6 139591649 139591649 G A TXLNB Nonsense_Mutation p.R211* 0.21 TCGA-06-5416-01 6 142688712 142688712 G T GPR126 Missense_Mutation p.G37V 0.22 deleterious(0) possibly_damaging(0.844) TCGA-06-5416-01 6 142741177 142741177 C A GPR126 Missense_Mutation p.F1085L 0.24 tolerated(0.22) possibly_damaging(0.752) TCGA-06-5416-01 6 143086000 143086000 G A HIVEP2 Silent p.I1818I 0.27 TCGA-06-5416-01 6 143090923 143090923 G T HIVEP2 Missense_Mutation p.F1651L 0.31 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 6 143093071 143093071 C T HIVEP2 Silent p.L935L 0.24 TCGA-06-5416-01 6 143094953 143094953 C A HIVEP2 Missense_Mutation p.R308I 0.28 tolerated(0.11) probably_damaging(0.92) TCGA-06-5416-01 6 143780309 143780309 G A PEX3 Missense_Mutation p.R54Q 0.31 deleterious(0.01) probably_damaging(0.986) TCGA-06-5416-01 6 143792209 143792209 G A PEX3 Missense_Mutation p.G148D 0.50 tolerated(0.19) possibly_damaging(0.614) TCGA-06-5416-01 6 143810428 143810428 C A PEX3 3'UTR 0.21 TCGA-06-5416-01 6 144178569 144178569 G T LTV1 Missense_Mutation p.G176V 0.23 tolerated(0.07) benign(0.011) TCGA-06-5416-01 6 144783920 144783920 G T UTRN Missense_Mutation p.G995V 0.22 tolerated(0.11) possibly_damaging(0.862) TCGA-06-5416-01 6 144803524 144803524 G T UTRN Missense_Mutation p.E1229D 0.36 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 6 144843278 144843278 G T UTRN Missense_Mutation p.D1902Y 0.21 deleterious(0) possibly_damaging(0.649) TCGA-06-5416-01 6 144898394 144898394 C A UTRN Silent p.I2483I 0.23 TCGA-06-5416-01 6 145118964 145118964 A G UTRN Missense_Mutation p.N3028S 0.46 deleterious(0.01) benign(0.159) TCGA-06-5416-01 6 145157514 145157514 C T UTRN Missense_Mutation p.S3301L 0.55 tolerated(0.07) benign(0.152) TCGA-06-5416-01 6 145157648 145157648 C T UTRN Missense_Mutation p.L3346F 0.56 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 6 146007370 146007370 A G EPM2A Missense_Mutation p.Y122H 0.49 tolerated(0.17) benign(0.098) TCGA-06-5416-01 6 146240543 146240543 G A SHPRH Missense_Mutation p.R1365C 0.57 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 6 146266703 146266703 G T SHPRH Silent p.I464I 0.18 TCGA-06-5416-01 6 146275984 146275984 C A SHPRH Missense_Mutation p.D159Y 0.57 deleterious_low_confidence(0.01) possibly_damaging(0.502) TCGA-06-5416-01 6 146276198 146276198 C A SHPRH Missense_Mutation p.E87D 0.19 tolerated_low_confidence(0.8) benign(0.001) TCGA-06-5416-01 6 147124508 147124508 T A ADGB Intron 0.30 TCGA-06-5416-01 6 148865733 148865733 C T SASH1 Missense_Mutation p.P1043S 0.42 tolerated_low_confidence(0.22) benign(0.004) TCGA-06-5416-01 6 148869513 148869513 C A SASH1 Missense_Mutation p.S1188Y 0.53 deleterious_low_confidence(0.04) probably_damaging(0.999) TCGA-06-5416-01 6 149262504 149262504 G T UST Missense_Mutation p.E127D 0.27 tolerated(0.27) benign(0.018) TCGA-06-5416-01 6 149275050 149275050 T G UST Missense_Mutation p.L164V 0.68 tolerated(0.14) benign(0.349) TCGA-06-5416-01 6 149699164 149699164 A T TAB2 Missense_Mutation p.N38I 0.58 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 6 149699206 149699206 G T TAB2 Missense_Mutation p.R52I 0.32 deleterious(0.02) benign(0.013) TCGA-06-5416-01 6 149922808 149922808 G T KATNA1 Missense_Mutation p.F270L 0.30 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 6 149959566 149959566 G A KATNA1 Silent p.L40L 0.24 TCGA-06-5416-01 6 149982816 149982816 G A LATS1 3'UTR 0.57 TCGA-06-5416-01 6 150004336 150004336 C T LATS1 Missense_Mutation p.R630H 0.17 deleterious(0) possibly_damaging(0.84) TCGA-06-5416-01 6 150004618 150004618 G T LATS1 Missense_Mutation p.T536N 0.29 tolerated(0.19) benign(0.016) TCGA-06-5416-01 6 150005477 150005477 G A LATS1 Missense_Mutation p.P250S 0.26 tolerated_low_confidence(0.68) probably_damaging(0.997) TCGA-06-5416-01 6 150174215 150174215 C T LRP11 Missense_Mutation p.R232H 0.55 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 6 150210489 150210489 G A RAET1E Missense_Mutation p.P206L 0.25 deleterious(0.02) benign(0.035) TCGA-06-5416-01 6 150211192 150211192 T G RAET1E Missense_Mutation p.N59H 0.31 deleterious(0.02) possibly_damaging(0.586) TCGA-06-5416-01 6 150322192 150322192 A C RAET1K RNA 0.19 TCGA-06-5416-01 6 150342064 150342064 C T RAET1L Missense_Mutation p.S203N 0.25 deleterious(0.05) benign(0.063) TCGA-06-5416-01 6 150342207 150342207 C A RAET1L Missense_Mutation p.K155N 0.28 tolerated(1) benign(0.002) TCGA-06-5416-01 6 151671832 151671832 G T AKAP12 Missense_Mutation p.R769I 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 151672500 151672500 G A AKAP12 Missense_Mutation p.E992K 0.27 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 6 151686625 151686625 A C ZBTB2 3'UTR 0.27 TCGA-06-5416-01 6 151687333 151687333 G A ZBTB2 Missense_Mutation p.R290C 0.63 tolerated(0.06) benign(0.118) TCGA-06-5416-01 6 151939226 151939226 G T CCDC170 Missense_Mutation p.D698Y 0.27 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 6 152415580 152415580 G A ESR1 Missense_Mutation p.R477Q 0.32 tolerated(0.22) benign(0.032) TCGA-06-5416-01 6 152501289 152501289 C T SYNE1 Missense_Mutation p.M7814I 0.21 probably_damaging(0.976) TCGA-06-5416-01 6 152631955 152631955 C T SYNE1 Silent p.E5588E 0.21 TCGA-06-5416-01 6 152652866 152652866 C T SYNE1 Silent p.T4318T 0.23 TCGA-06-5416-01 6 152776647 152776647 G A SYNE1 Nonsense_Mutation p.R936* 0.28 TCGA-06-5416-01 6 152793471 152793471 T C SYNE1 Silent p.P476P 0.18 TCGA-06-5416-01 6 153019170 153019170 C T MYCT1 Missense_Mutation p.L45F 0.37 tolerated_low_confidence(0.11) benign(0.043) TCGA-06-5416-01 6 154412236 154412236 C T OPRM1 Missense_Mutation p.R358C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 154439875 154439875 C T OPRM1 3'UTR 0.24 TCGA-06-5416-01 6 15452385 15452385 C A JARID2 Missense_Mutation p.L158I 0.25 deleterious(0.05) probably_damaging(0.942) TCGA-06-5416-01 6 154735540 154735540 C T CNKSR3 Silent p.A321A 0.25 TCGA-06-5416-01 6 15501622 15501622 C A JARID2 Missense_Mutation p.F810L 0.59 tolerated(0.69) benign(0.001) TCGA-06-5416-01 6 155109020 155109020 G A SCAF8 Missense_Mutation p.G62E 0.28 deleterious(0) unknown(0) TCGA-06-5416-01 6 155113972 155113972 G T SCAF8 Missense_Mutation p.V113L 0.28 deleterious(0.02) unknown(0) TCGA-06-5416-01 6 15512474 15512474 G T JARID2 Missense_Mutation p.K996N 0.26 deleterious(0.02) possibly_damaging(0.784) TCGA-06-5416-01 6 15513582 15513582 C T JARID2 Nonsense_Mutation p.R1127* 0.29 TCGA-06-5416-01 6 155148314 155148314 C A SCAF8 Missense_Mutation p.P694T 0.60 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 6 155458481 155458481 G A TIAM2 Silent p.R455R 0.59 TCGA-06-5416-01 6 155561727 155561727 G T TIAM2 Nonsense_Mutation p.G1078* 0.29 TCGA-06-5416-01 6 155566781 155566781 T G TIAM2 Missense_Mutation p.S1190A 0.27 deleterious(0) benign(0.041) TCGA-06-5416-01 6 155575795 155575795 T G TIAM2 Intron 0.36 TCGA-06-5416-01 6 155597313 155597313 G T CLDN20 Nonsense_Mutation p.E154* 0.65 TCGA-06-5416-01 6 157495145 157495145 C T ARID1B Missense_Mutation p.S1010F 0.30 possibly_damaging(0.847) TCGA-06-5416-01 6 157963759 157963759 G A ZDHHC14 Missense_Mutation p.D130N 0.15 tolerated(0.24) possibly_damaging(0.898) TCGA-06-5416-01 6 158487586 158487586 C T SYNJ2 Missense_Mutation p.R546W 0.16 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 6 158497799 158497799 C T SYNJ2 Missense_Mutation p.P812S 0.14 tolerated(0.18) benign(0.014) TCGA-06-5416-01 6 158502289 158502289 G A SYNJ2 Missense_Mutation p.E906K 0.22 tolerated(0.23) possibly_damaging(0.679) TCGA-06-5416-01 6 158517271 158517271 G A SYNJ2 Missense_Mutation p.A1456T 0.68 tolerated_low_confidence(0.26) benign(0.003) TCGA-06-5416-01 6 158517493 158517493 G A SYNJ2 3'UTR 0.22 TCGA-06-5416-01 6 158734949 158734949 G A TULP4 5'UTR 0.25 TCGA-06-5416-01 6 158735152 158735152 T C TULP4 Missense_Mutation p.V35A 0.67 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 6 158870046 158870046 G A TULP4 Missense_Mutation p.D188N 0.18 tolerated(0.14) probably_damaging(0.995) TCGA-06-5416-01 6 158924833 158924833 G T TULP4 Nonsense_Mutation p.E1380* 0.12 TCGA-06-5416-01 6 158927635 158927635 G A TULP4 Missense_Mutation p.G1514D 0.21 deleterious(0.04) benign(0.077) TCGA-06-5416-01 6 158927669 158927669 C A TULP4 Missense_Mutation p.F1525L 0.23 deleterious(0.02) probably_damaging(0.994) TCGA-06-5416-01 6 158927776 158927776 C T TULP4 3'UTR 0.22 TCGA-06-5416-01 6 159046769 159046769 C T TMEM181 Silent p.F501F 0.21 TCGA-06-5416-01 6 159173012 159173012 A G SYTL3 Missense_Mutation p.T363A 0.17 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 6 159262612 159262612 C T OSTCP1 RNA 0.69 TCGA-06-5416-01 6 159420554 159420554 G T RSPH3 Missense_Mutation p.S152Y 0.26 deleterious(0) possibly_damaging(0.641) TCGA-06-5416-01 6 159461800 159461800 G T TAGAP Missense_Mutation p.A181D 0.61 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 6 160225638 160225638 G A PNLDC1 Missense_Mutation p.D133N 0.30 tolerated(0.72) benign(0.002) TCGA-06-5416-01 6 160454023 160454023 C A IGF2R Silent p.V365V 0.13 TCGA-06-5416-01 6 160454030 160454030 G A IGF2R Missense_Mutation p.E368K 0.36 tolerated(0.92) benign(0.022) TCGA-06-5416-01 6 160526094 160526094 A G IGF2R Missense_Mutation p.D2485G 0.42 deleterious(0) possibly_damaging(0.838) TCGA-06-5416-01 6 160560817 160560817 C T SLC22A1 Silent p.D398D 0.27 TCGA-06-5416-01 6 160677662 160677662 C T SLC22A2 Missense_Mutation p.G168S 0.56 deleterious(0) possibly_damaging(0.864) TCGA-06-5416-01 6 160888652 160888652 C T LPAL2 RNA 0.31 TCGA-06-5416-01 6 160913866 160913866 A G LPAL2 RNA 0.26 TCGA-06-5416-01 6 160978539 160978539 C T LPA Missense_Mutation p.D1566N 0.31 tolerated(0.82) possibly_damaging(0.826) TCGA-06-5416-01 6 160999600 160999600 G A LPA Missense_Mutation p.P1476S 0.29 deleterious(0.01) possibly_damaging(0.899) TCGA-06-5416-01 6 161007499 161007499 C A LPA Nonsense_Mutation p.E1371* 0.25 TCGA-06-5416-01 6 161010684 161010684 C T LPA Missense_Mutation p.R1283Q 0.27 tolerated(0.15) probably_damaging(0.992) TCGA-06-5416-01 6 161027630 161027630 C T LPA Silent p.T888T 0.23 TCGA-06-5416-01 6 1610932 1610932 C T FOXC1 Silent p.I84I 0.29 TCGA-06-5416-01 6 161134138 161134138 C T PLG Silent p.C176C 0.25 TCGA-06-5416-01 6 1612368 1612368 G A FOXC1 3'UTR 0.30 TCGA-06-5416-01 6 161587419 161587419 C T AGPAT4 Missense_Mutation p.G70D 0.28 tolerated(0.06) benign(0.216) TCGA-06-5416-01 6 1624439 1624439 C T GMDS Missense_Mutation p.D362N 0.31 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-06-5416-01 6 16307089 16307089 A C ATXN1 Missense_Mutation p.V640G 0.29 deleterious(0) probably_damaging(0.948) TCGA-06-5416-01 6 163836241 163836241 G A QKI Missense_Mutation p.E6K 0.33 deleterious_low_confidence(0.02) probably_damaging(0.991) TCGA-06-5416-01 6 163983103 163983103 T C QKI Splice_Site p.X212_splice 0.37 TCGA-06-5416-01 6 166571865 166571865 C T T Missense_Mutation p.D416N 0.27 deleterious(0.02) possibly_damaging(0.747) TCGA-06-5416-01 6 166872949 166872949 G A RPS6KA2 Missense_Mutation p.R363W 0.27 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 6 167356574 167356574 G A RNASET2 Missense_Mutation p.L89F 0.59 deleterious(0.02) possibly_damaging(0.904) TCGA-06-5416-01 6 167550090 167550090 C T CCR6 Silent p.I124I 0.24 TCGA-06-5416-01 6 167550550 167550550 G A CCR6 Missense_Mutation p.A278T 0.29 tolerated(0.59) benign(0.078) TCGA-06-5416-01 6 167721270 167721270 C T UNC93A Missense_Mutation p.A327V 0.24 deleterious(0.03) benign(0.086) TCGA-06-5416-01 6 167728784 167728784 C T UNC93A Silent p.C406C 0.64 TCGA-06-5416-01 6 167752194 167752194 C A TTLL2 Missense_Mutation p.T36N 0.22 tolerated_low_confidence(0.16) benign(0.094) TCGA-06-5416-01 6 167753934 167753934 C T TTLL2 Silent p.F182F 0.28 TCGA-06-5416-01 6 167754450 167754450 C T TTLL2 Silent p.L354L 0.27 TCGA-06-5416-01 6 168315982 168315982 G A MLLT4 Missense_Mutation p.D805N 0.59 tolerated(0.43) possibly_damaging(0.521) TCGA-06-5416-01 6 168325725 168325725 C T MLLT4 Missense_Mutation p.T1011I 0.26 deleterious(0.01) probably_damaging(0.936) TCGA-06-5416-01 6 168352142 168352142 G T MLLT4 Missense_Mutation p.D1363Y 0.57 deleterious_low_confidence(0) probably_damaging(0.967) TCGA-06-5416-01 6 169620314 169620314 C A THBS2 Missense_Mutation p.D1164Y 0.56 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 169625414 169625414 C T THBS2 Missense_Mutation p.D867N 0.43 deleterious(0) probably_damaging(0.922) TCGA-06-5416-01 6 169628272 169628272 G A THBS2 Silent p.I788I 0.36 TCGA-06-5416-01 6 170102749 170102749 T C C6orf120 Missense_Mutation p.I65T 0.33 deleterious(0) possibly_damaging(0.804) TCGA-06-5416-01 6 170118953 170118953 C A PHF10 Nonsense_Mutation p.E86* 0.27 TCGA-06-5416-01 6 170140248 170140248 C T TCTE3 3'UTR 0.35 TCGA-06-5416-01 6 170627085 170627085 A G FAM120B Missense_Mutation p.T203A 0.20 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 6 170627476 170627476 C T FAM120B Missense_Mutation p.S333L 0.28 tolerated(0.08) possibly_damaging(0.46) TCGA-06-5416-01 6 170627832 170627832 T C FAM120B Missense_Mutation p.Y452H 0.58 tolerated_low_confidence(0.52) unknown(0) TCGA-06-5416-01 6 170628038 170628038 C A FAM120B Missense_Mutation p.D520E 0.24 tolerated_low_confidence(1) benign(0.086) TCGA-06-5416-01 6 170628203 170628203 A C FAM120B Missense_Mutation p.E575D 0.20 tolerated(0.32) benign(0.159) TCGA-06-5416-01 6 170632308 170632308 C T FAM120B Nonsense_Mutation p.R626* 0.28 TCGA-06-5416-01 6 170858094 170858094 A C PSMB1 Nonsense_Mutation p.L74* 0.33 TCGA-06-5416-01 6 17282935 17282935 C A RBM24 Intron 0.31 TCGA-06-5416-01 6 17292214 17292214 G A RBM24 Missense_Mutation p.G192D 0.35 deleterious(0) benign(0.401) TCGA-06-5416-01 6 17606220 17606220 C A FAM8A1 Missense_Mutation p.P358H 0.19 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 6 17629394 17629394 C A NUP153 Missense_Mutation p.E1012D 0.24 tolerated(0.24) benign(0.199) TCGA-06-5416-01 6 17629583 17629583 G A NUP153 Silent p.G949G 0.21 TCGA-06-5416-01 6 17665550 17665550 G A NUP153 Nonsense_Mutation p.R379* 0.31 TCGA-06-5416-01 6 17675815 17675815 G T NUP153 Missense_Mutation p.S174Y 0.26 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 6 17855790 17855790 C T KIF13A Silent p.R124R 0.25 TCGA-06-5416-01 6 18121747 18121747 G A NHLRC1 Missense_Mutation p.S364L 0.30 tolerated(0.46) benign(0.004) TCGA-06-5416-01 6 18225819 18225819 G T DEK 3'UTR 0.77 TCGA-06-5416-01 6 20128976 20128976 G A MBOAT1 Nonsense_Mutation p.R162* 0.30 TCGA-06-5416-01 6 20490617 20490617 G A E2F3 Missense_Mutation p.D452N 0.56 deleterious(0.03) possibly_damaging(0.566) TCGA-06-5416-01 6 20546620 20546620 C T CDKAL1 Silent p.I13I 0.29 TCGA-06-5416-01 6 21595008 21595008 G T SOX4 Silent p.S81S 0.40 TCGA-06-5416-01 6 22287735 22287735 A C PRL Missense_Mutation p.S194A 0.28 tolerated(0.15) benign(0.02) TCGA-06-5416-01 6 22290545 22290545 C T PRL Missense_Mutation p.R117Q 0.24 tolerated(0.35) benign(0.443) TCGA-06-5416-01 6 22297195 22297195 G A PRL Missense_Mutation p.S6L 0.41 tolerated_low_confidence(0.38) benign(0.129) TCGA-06-5416-01 6 24178822 24178822 C A DCDC2 Missense_Mutation p.E354D 0.25 tolerated(0.08) benign(0.219) TCGA-06-5416-01 6 24205406 24205406 A C DCDC2 Intron 0.55 TCGA-06-5416-01 6 24466989 24466989 A C GPLD1 Missense_Mutation p.F247C 0.34 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 6 24467453 24467453 G A GPLD1 Nonsense_Mutation p.R199* 0.22 TCGA-06-5416-01 6 24476472 24476472 C T GPLD1 Nonsense_Mutation p.W89* 0.70 TCGA-06-5416-01 6 24480164 24480164 C T GPLD1 Silent p.A59A 0.59 TCGA-06-5416-01 6 24523116 24523116 C T ALDH5A1 Missense_Mutation p.T392I 0.56 deleterious(0.01) probably_damaging(0.985) TCGA-06-5416-01 6 24547559 24547559 C T KIAA0319 Missense_Mutation p.R1018Q 0.27 deleterious(0.02) probably_damaging(0.96) TCGA-06-5416-01 6 24566874 24566874 C A KIAA0319 Missense_Mutation p.R748I 0.33 deleterious(0) benign(0.102) TCGA-06-5416-01 6 24596456 24596456 C T KIAA0319 Missense_Mutation p.G149D 0.27 tolerated(0.13) benign(0.393) TCGA-06-5416-01 6 24718823 24718823 G T C6orf62 Missense_Mutation p.S25Y 0.30 deleterious(0) probably_damaging(0.912) TCGA-06-5416-01 6 24781711 24781711 G A GMNN Missense_Mutation p.A46T 0.08 tolerated(0.05) benign(0) TCGA-06-5416-01 6 24843686 24843686 C T FAM65B Missense_Mutation p.A442T 0.50 tolerated(0.54) benign(0.001) TCGA-06-5416-01 6 25426752 25426752 G A LRRC16A Silent p.L71L 0.09 TCGA-06-5416-01 6 25500439 25500439 T G LRRC16A Silent p.V457V 0.31 TCGA-06-5416-01 6 25554262 25554262 T G LRRC16A Missense_Mutation p.F844V 0.18 deleterious(0.03) benign(0.21) TCGA-06-5416-01 6 25619823 25619823 G A LRRC16A 3'UTR 0.24 TCGA-06-5416-01 6 25779535 25779535 G A SLC17A4 3'UTR 0.24 TCGA-06-5416-01 6 25850334 25850334 A G SLC17A3 Silent p.D355D 0.25 TCGA-06-5416-01 6 25914830 25914830 G A SLC17A2 Missense_Mutation p.P378S 0.23 tolerated(0.4) probably_damaging(0.932) TCGA-06-5416-01 6 25917305 25917305 G A SLC17A2 Silent p.G220G 0.29 TCGA-06-5416-01 6 25921455 25921455 G A SLC17A2 Silent p.F142F 0.24 TCGA-06-5416-01 6 26033782 26033782 G A HIST1H2AB Silent p.G5G 0.25 TCGA-06-5416-01 6 26087594 26087594 C A HFE 5'UTR 0.53 TCGA-06-5416-01 6 26368817 26368817 C A BTN3A2 Missense_Mutation p.S37Y 0.26 deleterious(0.02) benign(0.073) TCGA-06-5416-01 6 26385503 26385503 G A BTN2A2 Missense_Mutation p.V119I 0.26 tolerated(0.16) benign(0.171) TCGA-06-5416-01 6 26428103 26428103 C A BTN2A3P RNA 0.24 TCGA-06-5416-01 6 26468948 26468948 C A BTN2A1 3'UTR 0.24 TCGA-06-5416-01 6 26508797 26508797 C T BTN1A1 Nonsense_Mutation p.R326* 0.29 TCGA-06-5416-01 6 26637567 26637567 G A ZNF322 3'UTR 0.23 TCGA-06-5416-01 6 2685552 2685552 C T MYLK4 Missense_Mutation p.D175N 0.29 tolerated(0.35) benign(0.031) TCGA-06-5416-01 6 27101047 27101047 T C HIST1H2AG Missense_Mutation p.L66P 0.28 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-06-5416-01 6 27107381 27107381 C A HIST1H4I Silent p.L98L 0.24 TCGA-06-5416-01 6 27215676 27215676 G A PRSS16 Missense_Mutation p.R29H 0.24 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 6 27215677 27215677 C T PRSS16 Silent p.R29R 0.36 TCGA-06-5416-01 6 27420538 27420538 T C ZNF184 Missense_Mutation p.N267S 0.54 tolerated(0.66) possibly_damaging(0.895) TCGA-06-5416-01 6 2785355 2785355 C T WRNIP1 Missense_Mutation p.P613S 0.54 tolerated(0.34) benign(0.007) TCGA-06-5416-01 6 2785564 2785564 C T WRNIP1 3'UTR 0.19 TCGA-06-5416-01 6 28060440 28060440 C T ZNF165 3'Flank 0.23 TCGA-06-5416-01 6 28194796 28194796 G A ZSCAN9 5'UTR 0.54 TCGA-06-5416-01 6 28213543 28213543 G T ZKSCAN4 Missense_Mutation p.A330D 0.27 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 6 28219501 28219501 C T ZKSCAN4 Missense_Mutation p.M86I 0.43 tolerated(0.39) benign(0.006) TCGA-06-5416-01 6 28227210 28227210 C T NKAPL Missense_Mutation p.R21C 0.54 deleterious(0) unknown(0) TCGA-06-5416-01 6 28227786 28227786 A C NKAPL Missense_Mutation p.N213H 0.26 tolerated(0.07) unknown(0) TCGA-06-5416-01 6 28269582 28269582 C T PGBD1 Missense_Mutation p.R651C 0.61 tolerated(0.06) possibly_damaging(0.636) TCGA-06-5416-01 6 28269969 28269969 G A PGBD1 Missense_Mutation p.A780T 0.20 tolerated(0.56) benign(0.005) TCGA-06-5416-01 6 28270008 28270008 C T PGBD1 Missense_Mutation p.R793W 0.26 tolerated(0.1) benign(0) TCGA-06-5416-01 6 28333747 28333747 C A ZKSCAN3 Silent p.A434A 0.30 TCGA-06-5416-01 6 28333766 28333766 C A ZKSCAN3 Missense_Mutation p.L441I 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 2834117 2834117 C T SERPINB1 Missense_Mutation p.A289T 0.19 tolerated(0.4) benign(0.011) TCGA-06-5416-01 6 2836366 2836366 C T SERPINB1 Silent p.T181T 0.85 TCGA-06-5416-01 6 28472156 28472156 G A GPX6 Silent p.V193V 0.30 TCGA-06-5416-01 6 28499655 28499655 G A GPX5 Silent p.E114E 0.29 TCGA-06-5416-01 6 28540262 28540262 C T SCAND3 Missense_Mutation p.G1135E 0.22 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 6 28541289 28541289 C A SCAND3 Nonsense_Mutation p.E793* 0.25 TCGA-06-5416-01 6 28554474 28554474 G T SCAND3 Silent p.V7V 0.13 TCGA-06-5416-01 6 28554553 28554553 G A SCAND3 5'UTR 0.42 TCGA-06-5416-01 6 28871683 28871683 G T TRIM27 3'UTR 0.43 TCGA-06-5416-01 6 28887858 28887858 G T TRIM27 Silent p.I226I 0.22 TCGA-06-5416-01 6 28887940 28887940 C T TRIM27 Missense_Mutation p.R199H 0.24 tolerated(0.41) possibly_damaging(0.84) TCGA-06-5416-01 6 28891329 28891329 C T TRIM27 Missense_Mutation p.M27I 0.29 deleterious(0.04) benign(0.178) TCGA-06-5416-01 6 28971677 28971677 C A ZNF311 Intron 0.57 TCGA-06-5416-01 6 29080168 29080168 C A OR2J3 Missense_Mutation p.F167L 0.25 tolerated(1) benign(0.007) TCGA-06-5416-01 6 29275126 29275126 C T OR14J1 Silent p.F220F 0.30 TCGA-06-5416-01 6 29323996 29323996 G A OR5V1 5'UTR 0.24 TCGA-06-5416-01 6 29342150 29342150 A G OR12D3 Silent p.G305G 0.28 TCGA-06-5416-01 6 29365116 29365116 C T OR12D2 Missense_Mutation p.L214F 0.24 tolerated(0.07) benign(0.25) TCGA-06-5416-01 6 29394702 29394702 G A OR11A1 Silent p.F239F 0.56 TCGA-06-5416-01 6 29430096 29430096 C T OR2H1 Nonsense_Mutation p.R184* 0.55 TCGA-06-5416-01 6 29454612 29454612 C T MAS1L Silent p.E356E 0.51 TCGA-06-5416-01 6 29454871 29454871 G A MAS1L Missense_Mutation p.A270V 0.27 tolerated(1) benign(0.107) TCGA-06-5416-01 6 2949223 2949223 G A SERPINB6 Silent p.I218I 0.27 TCGA-06-5416-01 6 2955774 2955774 G T SERPINB6 Missense_Mutation p.S99Y 0.53 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 6 29572373 29572373 C T GABBR1 Silent p.A870A 0.19 TCGA-06-5416-01 6 29581137 29581137 C A GABBR1 Missense_Mutation p.K483N 0.08 deleterious(0.03) possibly_damaging(0.661) TCGA-06-5416-01 6 29638162 29638162 C T MOG Nonsense_Mutation p.R233* 0.30 TCGA-06-5416-01 6 29641328 29641328 C T ZFP57 Missense_Mutation p.R187H 0.32 tolerated(0.27) benign(0.041) TCGA-06-5416-01 6 30029717 30029717 A G ZNRD1 Missense_Mutation p.T57A 0.24 deleterious(0.02) benign(0.265) TCGA-06-5416-01 6 30114905 30114905 C T TRIM40 Silent p.I166I 0.27 TCGA-06-5416-01 6 30122112 30122112 G A TRIM10 Silent p.I360I 0.36 TCGA-06-5416-01 6 30126325 30126325 G T TRIM10 Missense_Mutation p.L203I 0.26 deleterious(0.02) benign(0.113) TCGA-06-5416-01 6 30131761 30131761 C A TRIM15 Missense_Mutation p.F100L 0.26 tolerated(1) benign(0.06) TCGA-06-5416-01 6 30153935 30153935 C T TRIM26 Silent p.V446V 0.17 TCGA-06-5416-01 6 30308128 30308128 G T TRIM39 Nonsense_Mutation p.E295* 0.57 TCGA-06-5416-01 6 30545865 30545865 C T ABCF1 Nonsense_Mutation p.R77* 0.27 TCGA-06-5416-01 6 30570286 30570286 C T PPP1R10 Missense_Mutation p.E714K 0.25 tolerated_low_confidence(0.06) unknown(0) TCGA-06-5416-01 6 30610836 30610836 T C ATAT1 Intron 0.32 TCGA-06-5416-01 6 30621139 30621139 C A DHX16 Missense_Mutation p.E1002D 0.56 tolerated(0.05) unknown(0) TCGA-06-5416-01 6 30623024 30623024 C T DHX16 Silent p.Q917Q 0.56 TCGA-06-5416-01 6 30623050 30623050 G A DHX16 Missense_Mutation p.R909C 0.27 tolerated(0.09) unknown(0) TCGA-06-5416-01 6 30624843 30624843 C A DHX16 Missense_Mutation p.E678D 0.18 deleterious(0) unknown(0) TCGA-06-5416-01 6 30652914 30652914 C T PPP1R18 Silent p.E294E 0.24 TCGA-06-5416-01 6 30671757 30671757 C T MDC1 Missense_Mutation p.A1735T 0.28 tolerated(0.12) benign(0.076) TCGA-06-5416-01 6 30675980 30675980 C A MDC1 Missense_Mutation p.E792D 0.57 tolerated(0.12) probably_damaging(0.935) TCGA-06-5416-01 6 30680655 30680655 C T MDC1 Missense_Mutation p.G355E 0.22 tolerated(0.32) benign(0.001) TCGA-06-5416-01 6 30708017 30708017 C T FLOT1 Missense_Mutation p.R214K 0.35 deleterious(0.03) benign(0.323) TCGA-06-5416-01 6 30709582 30709582 G T FLOT1 Missense_Mutation p.Q36K 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 6 30864409 30864409 G A DDR1 Missense_Mutation p.D546N 0.28 tolerated(0.23) benign(0.255) TCGA-06-5416-01 6 30889742 30889742 C A VARS2 Missense_Mutation p.F622L 0.57 deleterious(0.02) possibly_damaging(0.828) TCGA-06-5416-01 6 30893473 30893473 G T VARS2 Missense_Mutation p.A1010S 0.35 deleterious(0.01) benign(0.002) TCGA-06-5416-01 6 30893700 30893700 G A VARS2 Missense_Mutation p.R1032Q 0.32 tolerated(0.07) benign(0.263) TCGA-06-5416-01 6 30955058 30955058 C T MUC21 Missense_Mutation p.S369F 0.26 tolerated(0.06) unknown(0) TCGA-06-5416-01 6 31122430 31122430 G A CCHCR1 Missense_Mutation p.A215V 0.32 tolerated(0.07) possibly_damaging(0.801) TCGA-06-5416-01 6 31129467 31129467 G A TCF19 Missense_Mutation p.R161Q 0.26 tolerated(0.3) possibly_damaging(0.602) TCGA-06-5416-01 6 31138191 31138191 G A POU5F1 Silent p.F69F 0.16 TCGA-06-5416-01 6 31465958 31465958 C T MICB 5'UTR 0.45 TCGA-06-5416-01 6 31498936 31498936 C T DDX39B Missense_Mutation p.R339Q 0.20 deleterious(0.02) benign(0.361) TCGA-06-5416-01 6 31513271 31513271 T C ATP6V1G2 Missense_Mutation p.N91D 0.27 deleterious(0.01) benign(0.077) TCGA-06-5416-01 6 31515997 31515997 C T NFKBIL1 Missense_Mutation p.R39C 0.65 deleterious(0) possibly_damaging(0.901) TCGA-06-5416-01 6 3154179 3154179 A G TUBB2A Missense_Mutation p.V419A 0.42 deleterious_low_confidence(0) possibly_damaging(0.522) TCGA-06-5416-01 6 31544581 31544581 C T TNF Silent p.A90A 0.23 TCGA-06-5416-01 6 31555016 31555016 C T LST1 5'UTR 0.72 TCGA-06-5416-01 6 31604122 31604122 C A PRRC2A Missense_Mutation p.L1921I 0.59 unknown(0) TCGA-06-5416-01 6 31607363 31607363 C T BAG6 Missense_Mutation p.A1073T 0.21 tolerated(0.39) possibly_damaging(0.483) TCGA-06-5416-01 6 31613260 31613260 C T BAG6 Missense_Mutation p.R353Q 0.30 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 6 31630099 31630099 C A GPANK1 Nonsense_Mutation p.E339* 0.22 TCGA-06-5416-01 6 31646907 31646907 C T LY6G5C Missense_Mutation p.S87N 0.55 deleterious(0) possibly_damaging(0.901) TCGA-06-5416-01 6 31669075 31669075 C T ABHD16A Missense_Mutation p.A78T 0.56 deleterious(0.03) benign(0.355) TCGA-06-5416-01 6 31669076 31669076 G A ABHD16A Silent p.F77F 0.34 TCGA-06-5416-01 6 31675806 31675806 C T LY6G6F Missense_Mutation p.L181F 0.28 deleterious(0.03) possibly_damaging(0.86) TCGA-06-5416-01 6 31692665 31692665 G A C6orf25 Intron 0.25 TCGA-06-5416-01 6 31696064 31696064 G A DDAH2 Silent p.F159F 0.52 TCGA-06-5416-01 6 31698508 31698508 G A CLIC1 3'UTR 0.28 TCGA-06-5416-01 6 31710717 31710717 G A MSH5 Missense_Mutation p.R112Q 0.60 tolerated(0.57) benign(0.002) TCGA-06-5416-01 6 31728569 31728569 G A MSH5 Missense_Mutation p.E639K 0.26 deleterious(0) possibly_damaging(0.758) TCGA-06-5416-01 6 31729283 31729283 G A MSH5 Missense_Mutation p.R692Q 0.66 deleterious(0.04) benign(0.022) TCGA-06-5416-01 6 31734059 31734059 C T VWA7 Missense_Mutation p.V763I 0.46 tolerated(0.33) benign(0.288) TCGA-06-5416-01 6 31748674 31748674 G A VARS Silent p.S897S 0.36 TCGA-06-5416-01 6 31765615 31765615 G A LSM2 Silent p.Y69Y 0.27 TCGA-06-5416-01 6 31778175 31778175 C A HSPA1L Missense_Mutation p.E525D 0.24 tolerated_low_confidence(0.06) probably_damaging(0.987) TCGA-06-5416-01 6 31778497 31778497 C T HSPA1L Missense_Mutation p.R418H 0.22 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-06-5416-01 6 31797689 31797689 G T HSPA1B 3'UTR 0.39 TCGA-06-5416-01 6 31838595 31838595 C T SLC44A4 Missense_Mutation p.A311T 0.21 tolerated(0.07) possibly_damaging(0.861) TCGA-06-5416-01 6 31860234 31860234 G T EHMT2 Missense_Mutation p.L272I 0.16 tolerated_low_confidence(0.24) probably_damaging(0.931) TCGA-06-5416-01 6 31895302 31895302 A C C2 5'UTR 0.35 TCGA-06-5416-01 6 31896670 31896670 G T CFB Intron 0.61 TCGA-06-5416-01 6 31911741 31911741 G A CFB Missense_Mutation p.R441K 0.27 tolerated(0.53) benign(0.275) TCGA-06-5416-01 6 31913052 31913052 G A C2 Missense_Mutation p.R726Q 0.63 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 31915557 31915557 G T CFB Missense_Mutation p.A735S 0.23 tolerated(0.1) possibly_damaging(0.452) TCGA-06-5416-01 6 31919702 31919702 G A CFB Silent p.R1232R 0.35 TCGA-06-5416-01 6 31919945 31919945 G A NELFE 3'UTR 0.59 TCGA-06-5416-01 6 31930566 31930566 C T SKIV2L Silent p.N429N 0.30 TCGA-06-5416-01 6 31935615 31935615 G A SKIV2L Missense_Mutation p.G903R 0.59 tolerated(0.67) benign(0.016) TCGA-06-5416-01 6 31938207 31938207 C T DXO Silent p.P287P 0.90 TCGA-06-5416-01 6 31938507 31938507 G A DXO Missense_Mutation p.L230F 0.12 deleterious(0.01) probably_damaging(0.991) TCGA-06-5416-01 6 31947271 31947271 C G STK19 Missense_Mutation p.D252E 0.19 tolerated(0.17) benign(0.085) TCGA-06-5416-01 6 31974491 31974491 A C AL645922.1 Intron 0.23 TCGA-06-5416-01 6 32012998 32012998 G A TNXB 5'UTR 0.36 TCGA-06-5416-01 6 32029315 32029315 G A TNXB Missense_Mutation p.R2451W 0.32 benign(0.003) TCGA-06-5416-01 6 32057045 32057045 G A TNXB Nonsense_Mutation p.R824* 0.22 TCGA-06-5416-01 6 32094937 32094937 G A ATF6B Silent p.C95C 0.27 TCGA-06-5416-01 6 32095477 32095477 G A ATF6B Missense_Mutation p.L48F 0.27 tolerated(0.37) benign(0.071) TCGA-06-5416-01 6 32147328 32147328 C A RNF5 Missense_Mutation p.L51I 0.30 tolerated(0.07) possibly_damaging(0.823) TCGA-06-5416-01 6 32155765 32155765 G A PBX2 Missense_Mutation p.R238C 0.76 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 32157492 32157492 G A PBX2 Silent p.S67S 0.60 TCGA-06-5416-01 6 32165117 32165117 G T NOTCH4 Missense_Mutation p.L1671I 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 32170307 32170307 G A NOTCH4 Silent p.L1101L 0.27 TCGA-06-5416-01 6 32190436 32190436 G T NOTCH4 Missense_Mutation p.F101L 0.56 deleterious(0.01) probably_damaging(0.986) TCGA-06-5416-01 6 32190858 32190858 G A NOTCH4 Silent p.L27L 0.27 TCGA-06-5416-01 6 32260652 32260652 A G C6orf10 3'UTR 0.26 TCGA-06-5416-01 6 32267705 32267705 G A C6orf10 Missense_Mutation p.P211S 0.19 deleterious(0.01) benign(0.062) TCGA-06-5416-01 6 32407786 32407786 C T HLA-DRA Missense_Mutation p.A20V 0.56 tolerated(0.5) benign(0.023) TCGA-06-5416-01 6 32487258 32487258 C A HLA-DRB5 Missense_Mutation p.D181Y 0.32 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 6 32489799 32489799 G A HLA-DRB5 Missense_Mutation p.P85S 0.48 tolerated(0.06) benign(0.057) TCGA-06-5416-01 6 32629834 32629834 C T HLA-DQB1 Missense_Mutation p.V191M 0.34 deleterious(0.01) possibly_damaging(0.776) TCGA-06-5416-01 6 32632755 32632755 C T HLA-DQB1 Missense_Mutation p.E67K 0.52 deleterious(0.01) possibly_damaging(0.881) TCGA-06-5416-01 6 32847303 32847303 T A PPP1R2P1 RNA 0.34 TCGA-06-5416-01 6 32918385 32918385 G T HLA-DMA Missense_Mutation p.A95D 0.60 tolerated(0.06) benign(0.291) TCGA-06-5416-01 6 33145955 33145955 C T COL11A2 Missense_Mutation p.R523Q 0.23 possibly_damaging(0.785) TCGA-06-5416-01 6 33146502 33146502 C T COL11A2 Missense_Mutation p.R472Q 0.57 possibly_damaging(0.785) TCGA-06-5416-01 6 33157191 33157191 A G COL11A2 Silent p.G46G 0.46 TCGA-06-5416-01 6 33169562 33169562 T G SLC39A7 Missense_Mutation p.F151C 0.26 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 6 33173616 33173616 G A HSD17B8 Missense_Mutation p.R193H 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 33174174 33174174 C A HSD17B8 Missense_Mutation p.F239L 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 33218759 33218759 C T VPS52 Silent p.A677A 0.62 TCGA-06-5416-01 6 33256144 33256144 T G WDR46 Missense_Mutation p.E155A 0.54 deleterious(0) probably_damaging(0.91) TCGA-06-5416-01 6 33283000 33283000 C T ZBTB22 Missense_Mutation p.R565H 0.30 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 6 33283034 33283034 C A ZBTB22 Missense_Mutation p.D554Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 33283056 33283056 G A ZBTB22 Silent p.C546C 0.23 TCGA-06-5416-01 6 33286963 33286963 C A DAXX Missense_Mutation p.K658N 0.25 tolerated(0.08) benign(0.01) TCGA-06-5416-01 6 33368238 33368238 G A KIFC1 Intron 0.33 TCGA-06-5416-01 6 33405915 33405915 C A SYNGAP1 Silent p.I411I 0.25 TCGA-06-5416-01 6 33410911 33410911 C T SYNGAP1 Missense_Mutation p.S861L 0.23 deleterious(0.02) possibly_damaging(0.636) TCGA-06-5416-01 6 33419586 33419586 C T SYNGAP1 Missense_Mutation p.A1312V 0.25 deleterious(0) possibly_damaging(0.554) TCGA-06-5416-01 6 33422903 33422903 C A ZBTB9 Missense_Mutation p.P9H 0.35 deleterious_low_confidence(0.01) unknown(0) TCGA-06-5416-01 6 33423656 33423656 G T ZBTB9 Missense_Mutation p.R260L 0.27 tolerated(0.66) benign(0.002) TCGA-06-5416-01 6 335144 335144 G A DUSP22 Missense_Mutation p.D57N 0.24 deleterious(0.01) possibly_damaging(0.726) TCGA-06-5416-01 6 33541526 33541526 C T BAK1 3'UTR 0.28 TCGA-06-5416-01 6 33626856 33626856 C T ITPR3 Missense_Mutation p.A196V 0.28 tolerated(0.09) probably_damaging(0.973) TCGA-06-5416-01 6 33632656 33632656 C T ITPR3 Silent p.Y386Y 0.33 TCGA-06-5416-01 6 33632715 33632715 A G ITPR3 Missense_Mutation p.D406G 0.24 deleterious(0) benign(0.11) TCGA-06-5416-01 6 33635709 33635709 C T ITPR3 Silent p.F618F 0.28 TCGA-06-5416-01 6 33641488 33641488 G T ITPR3 Missense_Mutation p.D1017Y 0.31 deleterious(0.05) benign(0.13) TCGA-06-5416-01 6 33653280 33653280 G T ITPR3 Missense_Mutation p.D1818Y 0.48 deleterious(0) possibly_damaging(0.466) TCGA-06-5416-01 6 33693325 33693325 T C IP6K3 Missense_Mutation p.T220A 0.20 deleterious(0) probably_damaging(0.958) TCGA-06-5416-01 6 33696051 33696051 C T IP6K3 Missense_Mutation p.D76N 0.57 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 6 33740529 33740529 C T LEMD2 Missense_Mutation p.R463Q 0.28 deleterious(0.01) possibly_damaging(0.892) TCGA-06-5416-01 6 33990646 33990646 C T GRM4 Silent p.A897A 0.48 TCGA-06-5416-01 6 34003920 34003920 C T GRM4 Missense_Mutation p.R656Q 0.58 deleterious(0) possibly_damaging(0.859) TCGA-06-5416-01 6 34100887 34100887 C A GRM4 Missense_Mutation p.K129N 0.25 tolerated(0.23) probably_damaging(0.999) TCGA-06-5416-01 6 34211289 34211289 A C HMGA1 Missense_Mutation p.K88N 0.25 deleterious(0) unknown(0) TCGA-06-5416-01 6 34558195 34558195 C T C6orf106 3'UTR 0.60 TCGA-06-5416-01 6 34802535 34802535 G A UHRF1BP1 Missense_Mutation p.R189Q 0.22 deleterious(0) probably_damaging(0.965) TCGA-06-5416-01 6 34826832 34826832 G T UHRF1BP1 Missense_Mutation p.S900I 0.25 deleterious(0) benign(0.128) TCGA-06-5416-01 6 34831871 34831871 C A UHRF1BP1 Missense_Mutation p.S1103Y 0.52 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 34831953 34831953 C A UHRF1BP1 Missense_Mutation p.S1130R 0.27 deleterious(0.02) benign(0.197) TCGA-06-5416-01 6 34840316 34840316 G T UHRF1BP1 3'UTR 0.68 TCGA-06-5416-01 6 34847747 34847747 C A TAF11 Nonsense_Mutation p.E168* 0.20 TCGA-06-5416-01 6 34949577 34949577 C T ANKS1A Silent p.F182F 0.91 TCGA-06-5416-01 6 34985508 34985508 A G ANKS1A Missense_Mutation p.D561G 0.26 tolerated(0.11) benign(0.071) TCGA-06-5416-01 6 35107942 35107942 G A TCP11 Intron 0.33 TCGA-06-5416-01 6 35260748 35260748 C T ZNF76 Missense_Mutation p.A419V 0.28 tolerated(0.15) benign(0.11) TCGA-06-5416-01 6 35260758 35260758 G A ZNF76 Silent p.A422A 0.30 TCGA-06-5416-01 6 35262920 35262920 G A ZNF76 Splice_Site p.X537_splice 0.14 TCGA-06-5416-01 6 35443865 35443865 C T TEAD3 Missense_Mutation p.S244N 0.36 tolerated(0.77) benign(0.029) TCGA-06-5416-01 6 35454342 35454342 C T TEAD3 Missense_Mutation p.G33D 0.32 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 35715038 35715038 G A ARMC12 Missense_Mutation p.E176K 0.33 tolerated(0.08) probably_damaging(0.974) TCGA-06-5416-01 6 35773523 35773523 G A LHFPL5 Missense_Mutation p.G26S 0.55 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 35838220 35838220 G A SRPK1 Missense_Mutation p.R277C 0.33 deleterious(0.03) probably_damaging(0.973) TCGA-06-5416-01 6 35995980 35995980 A G MAPK14 Missense_Mutation p.T16A 0.26 deleterious(0.02) benign(0.003) TCGA-06-5416-01 6 36104675 36104675 C T MAPK13 Silent p.G210G 0.22 TCGA-06-5416-01 6 36168608 36168608 A C BRPF3 Missense_Mutation p.K170T 0.27 deleterious(0.01) benign(0.145) TCGA-06-5416-01 6 36339182 36339182 C A ETV7 Nonsense_Mutation p.E197* 0.26 TCGA-06-5416-01 6 36339269 36339269 T C ETV7 Missense_Mutation p.T168A 0.11 tolerated(0.79) benign(0.001) TCGA-06-5416-01 6 36454819 36454819 C T KCTD20 Missense_Mutation p.T376M 0.32 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 6 36454955 36454955 C T KCTD20 3'UTR 0.57 TCGA-06-5416-01 6 36767803 36767803 G A CPNE5 Silent p.F76F 0.61 TCGA-06-5416-01 6 36931048 36931048 G A PI16 Silent p.S310S 0.32 TCGA-06-5416-01 6 37186763 37186763 G A TMEM217 Missense_Mutation p.T15I 0.32 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 6 37443160 37443160 G A CMTR1 Missense_Mutation p.D670N 0.61 tolerated(0.07) possibly_damaging(0.797) TCGA-06-5416-01 6 37626161 37626161 T C MDGA1 Missense_Mutation p.D81G 0.07 deleterious(0.01) possibly_damaging(0.862) TCGA-06-5416-01 6 38790794 38790794 G A DNAH8 Missense_Mutation p.R1018H 0.29 possibly_damaging(0.512) TCGA-06-5416-01 6 38821009 38821009 G T DNAH8 Silent p.L1656L 0.25 TCGA-06-5416-01 6 38830128 38830128 C G DNAH8 Silent p.G1851G 0.28 TCGA-06-5416-01 6 38840515 38840515 G A DNAH8 Silent p.G2181G 0.30 TCGA-06-5416-01 6 38889198 38889198 G A DNAH8 Silent p.G3309G 0.27 TCGA-06-5416-01 6 38952045 38952045 G T DNAH8 Missense_Mutation p.D4122Y 0.19 probably_damaging(1) TCGA-06-5416-01 6 38952060 38952060 C T DNAH8 Missense_Mutation p.R4127C 0.56 probably_damaging(0.973) TCGA-06-5416-01 6 39159391 39159391 G A KCNK5 Missense_Mutation p.R259W 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 6 39162486 39162486 A C KCNK5 Missense_Mutation p.F117V 0.28 deleterious(0.01) probably_damaging(0.963) TCGA-06-5416-01 6 39272388 39272388 G A KCNK17 Silent p.F132F 0.24 TCGA-06-5416-01 6 39286896 39286896 G A KCNK16 Missense_Mutation p.A76V 0.27 deleterious(0.01) possibly_damaging(0.753) TCGA-06-5416-01 6 39552758 39552758 C T KIF6 Silent p.E331E 0.27 TCGA-06-5416-01 6 39869746 39869746 G A DAAM2 Missense_Mutation p.R1047H 0.08 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 6 39876832 39876832 G A MOCS1 Silent p.I383I 0.27 TCGA-06-5416-01 6 40359854 40359854 G A LRFN2 Missense_Mutation p.A733V 0.68 tolerated(0.34) benign(0.019) TCGA-06-5416-01 6 4069444 4069444 G T FAM217A Missense_Mutation p.S338Y 0.59 deleterious(0) probably_damaging(0.946) TCGA-06-5416-01 6 4077628 4077628 G A FAM217A Silent p.N7N 0.29 TCGA-06-5416-01 6 4087923 4087923 G A C6orf201 Silent p.T16T 0.27 TCGA-06-5416-01 6 4099316 4099316 G A C6orf201 Silent p.P56P 0.28 TCGA-06-5416-01 6 41160199 41160199 C T TREML2 Missense_Mutation p.R311K 0.25 tolerated_low_confidence(0.19) benign(0.084) TCGA-06-5416-01 6 41196216 41196216 C A TREML4 Nonsense_Mutation p.C17* 0.76 TCGA-06-5416-01 6 41250407 41250407 C T TREM1 Silent p.T44T 0.54 TCGA-06-5416-01 6 41309660 41309660 C T NCR2 Missense_Mutation p.P175S 0.36 tolerated(0.23) benign(0.175) TCGA-06-5416-01 6 41708337 41708337 G A PGC Missense_Mutation p.S220F 0.29 deleterious(0.01) benign(0.276) TCGA-06-5416-01 6 41738329 41738329 G T FRS3 3'UTR 0.26 TCGA-06-5416-01 6 41743288 41743288 G A FRS3 Missense_Mutation p.T41M 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 42036251 42036251 C T TAF8 Missense_Mutation p.P229L 0.32 deleterious(0) possibly_damaging(0.864) TCGA-06-5416-01 6 42152573 42152573 G A GUCA1B Missense_Mutation p.R195W 0.59 deleterious(0.03) possibly_damaging(0.841) TCGA-06-5416-01 6 42618082 42618082 C T UBR2 Silent p.F841F 0.26 TCGA-06-5416-01 6 42623409 42623409 G T UBR2 Missense_Mutation p.E940D 0.29 tolerated(0.06) benign(0.005) TCGA-06-5416-01 6 42689590 42689590 G A PRPH2 Silent p.I161I 0.60 TCGA-06-5416-01 6 42790581 42790581 C A GLTSCR1L Missense_Mutation p.S30Y 0.32 deleterious(0.01) probably_damaging(0.931) TCGA-06-5416-01 6 42824891 42824891 G A GLTSCR1L Missense_Mutation p.R724Q 0.61 tolerated(0.13) benign(0.01) TCGA-06-5416-01 6 42936212 42936212 C A PEX6 Nonsense_Mutation p.E502* 0.20 TCGA-06-5416-01 6 42975741 42975741 C A PPP2R5D Silent p.I265I 0.31 TCGA-06-5416-01 6 43025643 43025643 C A MRPL2 Intron 0.31 TCGA-06-5416-01 6 43029194 43029194 C A KLC4 Missense_Mutation p.Q59K 0.25 tolerated(0.38) benign(0.173) TCGA-06-5416-01 6 43152418 43152418 C T CUL9 Missense_Mutation p.R124C 0.59 tolerated(0.22) benign(0.004) TCGA-06-5416-01 6 43168195 43168195 G T CUL9 Missense_Mutation p.D1136Y 0.22 deleterious(0) possibly_damaging(0.738) TCGA-06-5416-01 6 43168445 43168445 G A CUL9 Missense_Mutation p.E1174K 0.34 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 6 43307069 43307069 C T ZNF318 Missense_Mutation p.R1556Q 0.27 probably_damaging(0.983) TCGA-06-5416-01 6 43307463 43307464 - T ZNF318 Frame_Shift_Ins p.V1425Sfs*5 0.20 TCGA-06-5416-01 6 43417877 43417877 C T ABCC10 3'UTR 0.61 TCGA-06-5416-01 6 43419706 43419706 G A DLK2 Missense_Mutation p.R130C 0.32 deleterious(0.02) possibly_damaging(0.724) TCGA-06-5416-01 6 43487137 43487137 G A POLR1C Missense_Mutation p.A70T 0.15 tolerated(0.08) possibly_damaging(0.663) TCGA-06-5416-01 6 43581801 43581801 C A POLH Missense_Mutation p.S550Y 0.29 tolerated(0.97) benign(0.001) TCGA-06-5416-01 6 43607891 43607891 G A MAD2L1BP Missense_Mutation p.R181Q 0.56 tolerated(0.17) benign(0.438) TCGA-06-5416-01 6 43608318 43608318 C T MAD2L1BP 3'UTR 0.33 TCGA-06-5416-01 6 44084336 44084336 T C MRPL14 Missense_Mutation p.T5A 0.24 tolerated_low_confidence(0.54) benign(0) TCGA-06-5416-01 6 44084351 44084351 G A MRPL14 5'UTR 0.32 TCGA-06-5416-01 6 44144711 44144711 G A CAPN11 Missense_Mutation p.A405T 0.26 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 6 44199115 44199115 G A SLC29A1 Missense_Mutation p.A261T 0.24 tolerated(0.58) benign(0.005) TCGA-06-5416-01 6 44250206 44250206 C T TCTE1 Missense_Mutation p.D313N 0.27 tolerated(0.24) probably_damaging(0.975) TCGA-06-5416-01 6 44272052 44272052 G A AARS2 Missense_Mutation p.R625C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 44275087 44275087 G A AARS2 Silent p.D313D 0.15 TCGA-06-5416-01 6 44279201 44279201 G T AARS2 Silent p.I169I 0.21 TCGA-06-5416-01 6 44336238 44336238 T C SPATS1 Splice_Site p.X232_splice 0.53 TCGA-06-5416-01 6 44374067 44374067 G T CDC5L Nonsense_Mutation p.E256* 0.56 TCGA-06-5416-01 6 44392313 44392313 G A CDC5L Missense_Mutation p.R521Q 0.41 tolerated(0.18) benign(0.409) TCGA-06-5416-01 6 44413436 44413436 G T CDC5L Missense_Mutation p.K712N 0.36 deleterious(0.01) probably_damaging(0.927) TCGA-06-5416-01 6 44413597 44413597 G A CDC5L Missense_Mutation p.R766K 0.08 deleterious(0) probably_damaging(0.934) TCGA-06-5416-01 6 45390250 45390250 C A RUNX2 Intron 0.24 TCGA-06-5416-01 6 45480127 45480127 T C RUNX2 Missense_Mutation p.V335A 0.32 tolerated(0.09) benign(0.329) TCGA-06-5416-01 6 46555858 46555858 G T CYP39A1 Silent p.I358I 0.15 TCGA-06-5416-01 6 46657337 46657337 C T TDRD6 Missense_Mutation p.A491V 0.28 tolerated(0.39) possibly_damaging(0.895) TCGA-06-5416-01 6 46661379 46661379 G A TDRD6 Silent p.P1838P 0.28 TCGA-06-5416-01 6 46663677 46663677 A G TDRD6 Missense_Mutation p.T2056A 0.59 deleterious(0.04) probably_damaging(0.998) TCGA-06-5416-01 6 46679243 46679243 C T PLA2G7 Missense_Mutation p.R218Q 0.26 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 46684130 46684130 A G PLA2G7 Silent p.L123L 0.57 TCGA-06-5416-01 6 46826212 46826212 G A GPR116 Missense_Mutation p.S1143L 0.56 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 6 46826467 46826467 G A GPR116 Missense_Mutation p.A1058V 0.62 deleterious(0) probably_damaging(0.96) TCGA-06-5416-01 6 46849784 46849784 A G GPR116 Splice_Site p.X224_splice 0.29 TCGA-06-5416-01 6 46851389 46851389 G A GPR116 Silent p.N173N 0.43 TCGA-06-5416-01 6 47251954 47251954 G A TNFRSF21 Silent p.G321G 0.55 TCGA-06-5416-01 6 47646833 47646833 A G GPR111 Missense_Mutation p.D145G 0.16 deleterious(0.01) possibly_damaging(0.678) TCGA-06-5416-01 6 47682166 47682166 G A GPR115 Silent p.S395S 0.30 TCGA-06-5416-01 6 47846664 47846664 C T PTCHD4 Missense_Mutation p.R639Q 0.54 tolerated(0.26) benign(0.066) TCGA-06-5416-01 6 4892045 4892045 G A CDYL Silent p.P41P 0.34 TCGA-06-5416-01 6 49399514 49399514 C T MUT Missense_Mutation p.R727Q 0.30 tolerated_low_confidence(0.45) benign(0.333) TCGA-06-5416-01 6 49409627 49409627 C T MUT Silent p.A578A 0.28 TCGA-06-5416-01 6 49415412 49415412 G A MUT Nonsense_Mutation p.R511* 0.24 TCGA-06-5416-01 6 49587067 49587067 C A RHAG Missense_Mutation p.D56Y 0.28 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 6 49660429 49660429 G A CRISP2 3'UTR 0.31 TCGA-06-5416-01 6 49754050 49754050 A G PGK2 Missense_Mutation p.V284A 0.28 deleterious(0.03) benign(0.045) TCGA-06-5416-01 6 49754689 49754689 G A PGK2 Missense_Mutation p.P71L 0.59 tolerated(0.09) benign(0.125) TCGA-06-5416-01 6 49931797 49931797 G A DEFB114 Missense_Mutation p.H8Y 0.28 deleterious_low_confidence(0) benign(0) TCGA-06-5416-01 6 50786497 50786497 C T TFAP2B 5'UTR 0.48 TCGA-06-5416-01 6 51656064 51656064 T C PKHD1 Missense_Mutation p.M2804V 0.58 tolerated(0.23) benign(0.019) TCGA-06-5416-01 6 51720867 51720867 C T PKHD1 Missense_Mutation p.A2579T 0.62 tolerated(0.47) benign(0.009) TCGA-06-5416-01 6 51751972 51751972 C T PKHD1 Silent p.P2356P 0.24 TCGA-06-5416-01 6 51777248 51777248 C A PKHD1 Missense_Mutation p.G2083V 0.26 deleterious(0) benign(0.236) TCGA-06-5416-01 6 51909767 51909767 A T PKHD1 Silent p.T904T 0.61 TCGA-06-5416-01 6 51936964 51936964 C T PKHD1 Missense_Mutation p.G184E 0.31 tolerated(0.13) benign(0.059) TCGA-06-5416-01 6 52103559 52103559 C T IL17F Missense_Mutation p.E75K 0.24 tolerated(0.38) benign(0.159) TCGA-06-5416-01 6 52103728 52103728 C T IL17F Silent p.S18S 0.31 TCGA-06-5416-01 6 52131466 52131466 C A MCM3 Missense_Mutation p.D746Y 0.56 deleterious(0.01) benign(0.396) TCGA-06-5416-01 6 52132716 52132716 C A MCM3 Missense_Mutation p.E718D 0.26 tolerated(0.55) benign(0.001) TCGA-06-5416-01 6 52303324 52303324 C T EFHC1 Nonsense_Mutation p.R170* 0.58 TCGA-06-5416-01 6 52441697 52441697 C T TRAM2 Missense_Mutation p.R6K 0.23 tolerated(1) probably_damaging(0.97) TCGA-06-5416-01 6 52550863 52550863 G T TMEM14A 3'UTR 0.30 TCGA-06-5416-01 6 52697688 52697688 G A GSTA5 Missense_Mutation p.S172L 0.54 deleterious(0.04) benign(0.323) TCGA-06-5416-01 6 52905944 52905944 C T ICK Missense_Mutation p.A31T 0.55 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 6 52993682 52993682 G A GCM1 Silent p.G211G 0.24 TCGA-06-5416-01 6 53156747 53156747 C A ELOVL5 Nonsense_Mutation p.G25* 0.29 TCGA-06-5416-01 6 53371716 53371716 A C GCLC Missense_Mutation p.F398V 0.19 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 6 53516352 53516352 G A KLHL31 3'UTR 0.52 TCGA-06-5416-01 6 5369265 5369265 G A FARS2 Silent p.A154A 0.20 TCGA-06-5416-01 6 54034372 54034372 T C MLIP Splice_Site p.X313_splice 0.33 TCGA-06-5416-01 6 54735108 54735108 C T FAM83B Missense_Mutation p.P22S 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 54792307 54792307 A C FAM83B Missense_Mutation p.N204T 0.59 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 6 54806754 54806754 G T FAM83B Missense_Mutation p.K995N 0.58 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 6 55739539 55739539 C A BMP5 Missense_Mutation p.R42I 0.26 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 6 56324979 56324979 T C DST Missense_Mutation p.D5068G 0.61 probably_damaging(0.917) TCGA-06-5416-01 6 56373390 56373390 G A DST Silent p.I3769I 0.31 TCGA-06-5416-01 6 56374560 56374560 C T DST Missense_Mutation p.E3675K 0.35 probably_damaging(0.999) TCGA-06-5416-01 6 56380365 56380365 G T DST Missense_Mutation p.F3530L 0.68 probably_damaging(0.998) TCGA-06-5416-01 6 56394307 56394307 C T DST Missense_Mutation p.S3222N 0.30 benign(0.004) TCGA-06-5416-01 6 56458869 56458869 C A DST Missense_Mutation p.K1483N 0.28 benign(0.421) TCGA-06-5416-01 6 56469027 56469027 C A DST Intron 0.44 TCGA-06-5416-01 6 56471066 56471066 G T DST Intron 0.36 TCGA-06-5416-01 6 56473995 56473995 C A DST Intron 0.27 TCGA-06-5416-01 6 56480868 56480868 G A DST Intron 0.28 TCGA-06-5416-01 6 56481179 56481179 C T DST Intron 0.06 TCGA-06-5416-01 6 56482111 56482111 C T DST Intron 0.28 TCGA-06-5416-01 6 56483165 56483165 G A DST Intron 0.27 TCGA-06-5416-01 6 56505185 56505185 C T DST Missense_Mutation p.G212D 0.26 possibly_damaging(0.543) TCGA-06-5416-01 6 56505384 56505384 C T DST Missense_Mutation p.E146K 0.26 benign(0.135) TCGA-06-5416-01 6 56917902 56917902 C A KIAA1586 Missense_Mutation p.S202Y 0.29 deleterious(0.01) probably_damaging(0.963) TCGA-06-5416-01 6 57033319 57033319 G A ZNF451 3'UTR 0.30 TCGA-06-5416-01 6 57189010 57189010 A C PRIM2 Missense_Mutation p.E90D 0.36 tolerated(0.27) benign(0.005) TCGA-06-5416-01 6 57398272 57398272 G A PRIM2 Silent p.Q325Q 0.16 TCGA-06-5416-01 6 57398316 57398316 A C PRIM2 Missense_Mutation p.K340T 0.11 deleterious(0.03) probably_damaging(0.945) TCGA-06-5416-01 6 592468 592468 C T EXOC2 Splice_Site p.X398_splice 0.37 TCGA-06-5416-01 6 6002688 6002688 G A NRN1 Missense_Mutation p.A33V 0.58 tolerated(0.21) benign(0.077) TCGA-06-5416-01 6 6145760 6145760 A G F13A1 3'UTR 0.12 TCGA-06-5416-01 6 63990359 63990359 C T LGSN Missense_Mutation p.R366Q 0.29 tolerated(0.09) possibly_damaging(0.608) TCGA-06-5416-01 6 63990599 63990599 C A LGSN Missense_Mutation p.R286I 0.28 deleterious(0) probably_damaging(0.981) TCGA-06-5416-01 6 64410345 64410345 G T PHF3 Nonsense_Mutation p.E1030* 0.52 TCGA-06-5416-01 6 70034800 70034800 T G BAI3 Missense_Mutation p.F951V 0.27 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 6 70423555 70423555 G A LMBRD1 Silent p.G299G 0.26 TCGA-06-5416-01 6 70462180 70462180 T G LMBRD1 Missense_Mutation p.K126Q 0.28 deleterious(0.01) benign(0.238) TCGA-06-5416-01 6 70500286 70500286 C T LMBRD1 Missense_Mutation p.A50T 0.52 tolerated(0.11) benign(0.23) TCGA-06-5416-01 6 70589534 70589534 C T COL19A1 Silent p.T25T 0.21 TCGA-06-5416-01 6 71235342 71235342 A G FAM135A Missense_Mutation p.D852G 0.32 deleterious(0) possibly_damaging(0.69) TCGA-06-5416-01 6 71603840 71603840 C T B3GAT2 Missense_Mutation p.D243N 0.30 deleterious(0) probably_damaging(0.96) TCGA-06-5416-01 6 7189460 7189460 C T RREB1 Silent p.S110S 0.22 TCGA-06-5416-01 6 72011645 72011645 A C OGFRL1 Missense_Mutation p.K417Q 0.53 tolerated_low_confidence(0.16) benign(0.403) TCGA-06-5416-01 6 72086721 72086721 T C MIR30C2 RNA 0.36 TCGA-06-5416-01 6 7230478 7230478 C T RREB1 Missense_Mutation p.R716W 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 6 7231010 7231010 C T RREB1 Missense_Mutation p.A893V 0.20 tolerated(0.09) benign(0.3) TCGA-06-5416-01 6 7231265 7231265 C A RREB1 Missense_Mutation p.S978Y 0.27 deleterious(0.01) benign(0.382) TCGA-06-5416-01 6 7247319 7247319 G A RREB1 Missense_Mutation p.D1546N 0.24 deleterious(0.04) benign(0.312) TCGA-06-5416-01 6 73017056 73017056 C T RIMS1 Missense_Mutation p.R1316C 0.21 deleterious(0.01) probably_damaging(0.915) TCGA-06-5416-01 6 7301706 7301706 G A SSR1 Missense_Mutation p.P127L 0.26 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 6 73110439 73110439 C A RIMS1 3'Flank 0.32 TCGA-06-5416-01 6 73751737 73751737 G A KCNQ5 Missense_Mutation p.G190R 0.26 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 6 74073550 74073550 C T KHDC3L Silent p.R207R 0.19 TCGA-06-5416-01 6 74079335 74079335 C T OOEP Missense_Mutation p.E61K 0.57 tolerated(0.93) benign(0) TCGA-06-5416-01 6 74117314 74117314 A C DDX43 Missense_Mutation p.K338T 0.22 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 6 74210446 74210446 G T MTO1 Missense_Mutation p.E729D 0.45 tolerated_low_confidence(0.19) benign(0.005) TCGA-06-5416-01 6 74331600 74331600 T C SLC17A5 Missense_Mutation p.N302S 0.55 deleterious(0.01) probably_damaging(0.989) TCGA-06-5416-01 6 74473403 74473403 G A CD109 Missense_Mutation p.A368T 0.26 deleterious(0.02) possibly_damaging(0.521) TCGA-06-5416-01 6 74502429 74502429 A C CD109 Missense_Mutation p.N928H 0.57 tolerated(0.18) benign(0.256) TCGA-06-5416-01 6 7562950 7562950 C T DSP Silent p.H221H 0.33 TCGA-06-5416-01 6 7568725 7568725 A C DSP Missense_Mutation p.K441T 0.56 probably_damaging(0.996) TCGA-06-5416-01 6 7571743 7571743 C T DSP Missense_Mutation p.S610F 0.30 benign(0.305) TCGA-06-5416-01 6 75796130 75796130 C T COL12A1 3'UTR 0.62 TCGA-06-5416-01 6 7580758 7580758 G A DSP Silent p.Q1445Q 0.28 TCGA-06-5416-01 6 75818736 75818736 C T COL12A1 Missense_Mutation p.A2700T 0.26 benign(0) TCGA-06-5416-01 6 75857453 75857453 A G COL12A1 Missense_Mutation p.V1452A 0.29 probably_damaging(0.997) TCGA-06-5416-01 6 75858081 75858081 C T COL12A1 Missense_Mutation p.R1427H 0.27 possibly_damaging(0.871) TCGA-06-5416-01 6 7585920 7585920 T C DSP Missense_Mutation p.S2809P 0.57 probably_damaging(0.975) TCGA-06-5416-01 6 75884826 75884826 C T COL12A1 Missense_Mutation p.A880T 0.59 benign(0.002) TCGA-06-5416-01 6 75887555 75887555 C T COL12A1 Missense_Mutation p.R754Q 0.30 probably_damaging(0.974) TCGA-06-5416-01 6 75893684 75893684 G A COL12A1 Missense_Mutation p.R392C 0.30 probably_damaging(0.912) TCGA-06-5416-01 6 75899440 75899440 G A COL12A1 Silent p.F162F 0.27 TCGA-06-5416-01 6 75965985 75965985 G A TMEM30A Nonsense_Mutation p.R307* 0.57 TCGA-06-5416-01 6 76022484 76022484 C T FILIP1 Missense_Mutation p.A1022T 0.25 tolerated(0.64) benign(0.021) TCGA-06-5416-01 6 76022621 76022621 C T FILIP1 Missense_Mutation p.R976Q 0.31 tolerated(0.34) possibly_damaging(0.476) TCGA-06-5416-01 6 76423258 76423258 G A SENP6 Missense_Mutation p.R980Q 0.31 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 6 76540142 76540142 G A MYO6 Missense_Mutation p.A91T 0.19 deleterious(0) unknown(0) TCGA-06-5416-01 6 76545617 76545617 G T MYO6 Splice_Site p.X166_splice 0.23 TCGA-06-5416-01 6 76558096 76558096 C A MYO6 Missense_Mutation p.P309H 0.05 deleterious(0.01) unknown(0) TCGA-06-5416-01 6 76624661 76624661 A C MYO6 Missense_Mutation p.N1264H 0.55 tolerated_low_confidence(0.09) probably_damaging(0.963) TCGA-06-5416-01 6 7862554 7862554 G A BMP6 Missense_Mutation p.A343T 0.28 tolerated(0.55) benign(0.038) TCGA-06-5416-01 6 7895412 7895412 C T TXNDC5 Silent p.P181P 0.45 TCGA-06-5416-01 6 79607675 79607675 C T IRAK1BP1 Nonsense_Mutation p.R171* 0.28 TCGA-06-5416-01 6 79650559 79650559 G A PHIP Nonsense_Mutation p.R1773* 0.26 TCGA-06-5416-01 6 79665351 79665351 C A PHIP Missense_Mutation p.K1277N 0.19 tolerated(0.27) probably_damaging(0.991) TCGA-06-5416-01 6 79668267 79668267 C T PHIP Missense_Mutation p.R1236Q 0.24 tolerated(0.18) probably_damaging(0.994) TCGA-06-5416-01 6 80197162 80197162 G A LCA5 Silent p.F551F 0.28 TCGA-06-5416-01 6 8041489 8041489 G T BLOC1S5 Missense_Mutation p.L70I 0.57 deleterious(0.02) probably_damaging(0.986) TCGA-06-5416-01 6 8062790 8062790 G A BLOC1S5 Missense_Mutation p.R58C 0.54 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 6 80877486 80877486 G A BCKDHB Silent p.A145A 0.55 TCGA-06-5416-01 6 80910698 80910698 G A BCKDHB Missense_Mutation p.E264K 0.62 deleterious(0.01) benign(0.066) TCGA-06-5416-01 6 8097691 8097691 G A EEF1E1 Missense_Mutation p.L33F 0.64 deleterious(0.04) probably_damaging(0.955) TCGA-06-5416-01 6 8102722 8102722 C A EEF1E1 Missense_Mutation p.E11D 0.30 deleterious(0.04) unknown(0) TCGA-06-5416-01 6 82910347 82910347 C T IBTK Missense_Mutation p.D957N 0.30 deleterious(0.02) benign(0.045) TCGA-06-5416-01 6 82923966 82923966 C T IBTK Missense_Mutation p.D728N 0.31 deleterious(0.05) benign(0.016) TCGA-06-5416-01 6 82925889 82925889 C T IBTK Missense_Mutation p.R502Q 0.48 tolerated(0.31) benign(0.072) TCGA-06-5416-01 6 82925942 82925942 G A IBTK Silent p.S484S 0.29 TCGA-06-5416-01 6 82950166 82950166 C T IBTK Missense_Mutation p.R13Q 0.59 deleterious(0.03) benign(0.018) TCGA-06-5416-01 6 83728792 83728792 T G UBE3D Missense_Mutation p.K304Q 0.28 tolerated(0.46) benign(0.195) TCGA-06-5416-01 6 83733732 83733732 C T UBE3D Silent p.E231E 0.27 TCGA-06-5416-01 6 83748148 83748148 C A UBE3D Missense_Mutation p.E218D 0.28 deleterious(0.01) possibly_damaging(0.756) TCGA-06-5416-01 6 83823116 83823116 C A DOPEY1 Missense_Mutation p.F252L 0.22 tolerated(0.1) probably_damaging(0.997) TCGA-06-5416-01 6 83832648 83832648 C T DOPEY1 Silent p.F429F 0.24 TCGA-06-5416-01 6 83835252 83835252 C T DOPEY1 Missense_Mutation p.P507S 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 84061836 84061836 C T ME1 Missense_Mutation p.D129N 0.26 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 6 8413838 8413838 A C SLC35B3 Missense_Mutation p.L384V 0.32 tolerated(0.3) benign(0.003) TCGA-06-5416-01 6 8413856 8413856 G A SLC35B3 Silent p.L378L 0.58 TCGA-06-5416-01 6 84233504 84233504 G A PRSS35 Missense_Mutation p.G115E 0.30 tolerated(0.59) benign(0.006) TCGA-06-5416-01 6 84233693 84233693 T C PRSS35 Missense_Mutation p.V178A 0.21 deleterious(0) benign(0.307) TCGA-06-5416-01 6 84665146 84665146 T G CYB5R4 Missense_Mutation p.I492M 0.32 deleterious(0) possibly_damaging(0.853) TCGA-06-5416-01 6 84799254 84799254 G T MRAP2 3'UTR 0.36 TCGA-06-5416-01 6 85466569 85466569 C T TBX18 Silent p.S206S 0.52 TCGA-06-5416-01 6 86224335 86224335 G T SNX14 Missense_Mutation p.L761M 0.22 tolerated(0.1) benign(0.311) TCGA-06-5416-01 6 87964487 87964487 T G ZNF292 Silent p.P380P 0.26 TCGA-06-5416-01 6 87964568 87964568 A G ZNF292 Silent p.E407E 0.26 TCGA-06-5416-01 6 87964633 87964633 G A ZNF292 Missense_Mutation p.R429H 0.31 deleterious(0.01) benign(0.107) TCGA-06-5416-01 6 87967040 87967040 G A ZNF292 Missense_Mutation p.M1231I 0.36 tolerated(0.09) benign(0.001) TCGA-06-5416-01 6 87993950 87993950 C A GJB7 3'UTR 0.46 TCGA-06-5416-01 6 87994536 87994536 C T GJB7 Missense_Mutation p.R32H 0.23 deleterious(0.02) possibly_damaging(0.6) TCGA-06-5416-01 6 88210378 88210378 T C SLC35A1 Missense_Mutation p.V116A 0.29 deleterious(0.01) benign(0.241) TCGA-06-5416-01 6 88231219 88231219 C T RARS2 Missense_Mutation p.R333Q 0.60 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 6 88331092 88331092 C A ORC3 Missense_Mutation p.F336L 0.23 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 6 88768502 88768502 C T SPACA1 Missense_Mutation p.R146C 0.39 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 88775955 88775955 G A SPACA1 Missense_Mutation p.E263K 0.29 tolerated_low_confidence(0.08) possibly_damaging(0.804) TCGA-06-5416-01 6 88854123 88854123 C T CNR1 Missense_Mutation p.V291M 0.23 deleterious(0.04) probably_damaging(0.921) TCGA-06-5416-01 6 89324083 89324083 T A RNGTT Missense_Mutation p.K513I 0.28 deleterious(0) possibly_damaging(0.907) TCGA-06-5416-01 6 89387971 89387971 G T RNGTT Intron 0.30 TCGA-06-5416-01 6 90053455 90053455 C A UBE2J1 Nonsense_Mutation p.E18* 0.20 TCGA-06-5416-01 6 90089058 90089058 C A RRAGD Splice_Site p.X215_splice 0.19 TCGA-06-5416-01 6 90090009 90090009 G A RRAGD Silent p.F174F 0.24 TCGA-06-5416-01 6 90367985 90367985 C A MDN1 Missense_Mutation p.Q5042H 0.29 unknown(0) TCGA-06-5416-01 6 90385887 90385887 C A MDN1 Missense_Mutation p.Q4193H 0.26 possibly_damaging(0.885) TCGA-06-5416-01 6 90406124 90406124 G A MDN1 Missense_Mutation p.S3113L 0.31 benign(0.009) TCGA-06-5416-01 6 90418221 90418221 G A MDN1 Missense_Mutation p.A2631V 0.28 benign(0.048) TCGA-06-5416-01 6 90503634 90503634 G T MDN1 Silent p.A234A 0.55 TCGA-06-5416-01 6 90573529 90573529 C A CASP8AP2 RNA 0.29 TCGA-06-5416-01 6 90577274 90577274 T C CASP8AP2 RNA 0.29 TCGA-06-5416-01 6 90577645 90577645 C T CASP8AP2 RNA 0.20 TCGA-06-5416-01 6 90605687 90605687 C A GJA10 Nonsense_Mutation p.C500* 0.30 TCGA-06-5416-01 6 91266276 91266276 T C MAP3K7 Missense_Mutation p.T184A 0.27 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 6 93964481 93964481 C T EPHA7 Missense_Mutation p.E806K 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 6 94129136 94129136 G A EPHA7 5'UTR 0.77 TCGA-06-5416-01 6 97246369 97246369 C T GPR63 Silent p.G413G 0.55 TCGA-06-5416-01 6 97533178 97533178 C T KLHL32 Silent p.S196S 0.26 TCGA-06-5416-01 6 97575296 97575296 G A KLHL32 Silent p.T457T 0.28 TCGA-06-5416-01 6 97616050 97616050 A G MMS22L Missense_Mutation p.I969T 0.05 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 6 97702474 97702474 A T MMS22L Missense_Mutation p.S360T 0.21 tolerated(0.17) probably_damaging(0.979) TCGA-06-5416-01 6 99322261 99322261 G T FBXL4 Missense_Mutation p.L587I 0.27 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 6 99365527 99365527 C T FBXL4 Missense_Mutation p.C194Y 0.19 tolerated(1) benign(0.001) TCGA-06-5416-01 6 99729244 99729244 G T FAXC Silent p.I342I 0.30 TCGA-06-5416-01 6 99848731 99848731 A C PNISR Missense_Mutation p.D701E 0.29 tolerated_low_confidence(0.39) possibly_damaging(0.621) TCGA-06-5416-01 7 100028664 100028664 C T MEPCE Silent p.G341G 0.21 TCGA-06-5416-01 7 100029193 100029193 C T MEPCE Nonsense_Mutation p.R518* 0.21 TCGA-06-5416-01 7 100030732 100030732 C T MEPCE Missense_Mutation p.S621L 0.10 deleterious(0.01) probably_damaging(0.96) TCGA-06-5416-01 7 100148047 100148047 T A AGFG2 Missense_Mutation p.F115Y 0.20 tolerated(0.5) benign(0.22) TCGA-06-5416-01 7 100162763 100162763 G A AGFG2 3'UTR 0.54 TCGA-06-5416-01 7 100172796 100172796 G A LRCH4 Silent p.F662F 0.13 TCGA-06-5416-01 7 100175853 100175853 G A LRCH4 Missense_Mutation p.R293W 0.23 tolerated(0.19) probably_damaging(0.997) TCGA-06-5416-01 7 100190558 100190558 G T FBXO24 Missense_Mutation p.K275N 0.39 tolerated_low_confidence(0.08) benign(0.403) TCGA-06-5416-01 7 100197715 100197715 G T FBXO24 Missense_Mutation p.S461I 0.17 tolerated_low_confidence(0.42) benign(0.403) TCGA-06-5416-01 7 100210616 100210616 C T MOSPD3 Nonsense_Mutation p.R68* 0.45 TCGA-06-5416-01 7 100225729 100225729 C T TFR2 Missense_Mutation p.V502I 0.24 tolerated(0.24) possibly_damaging(0.624) TCGA-06-5416-01 7 100240782 100240782 G T ACTL6B 3'UTR 0.21 TCGA-06-5416-01 7 100240793 100240793 G T ACTL6B 3'UTR 0.21 TCGA-06-5416-01 7 100276443 100276443 G A GNB2 3'UTR 0.22 TCGA-06-5416-01 7 100348298 100348298 T C ZAN Missense_Mutation p.S434P 0.11 probably_damaging(0.999) TCGA-06-5416-01 7 100348459 100348459 G A ZAN Silent p.Q487Q 0.41 TCGA-06-5416-01 7 100350564 100350564 G A ZAN Missense_Mutation p.E946K 0.18 unknown(0) TCGA-06-5416-01 7 100358077 100358077 G A ZAN Missense_Mutation p.G1254R 0.24 unknown(0) TCGA-06-5416-01 7 100361687 100361687 G A ZAN Missense_Mutation p.D1379N 0.53 unknown(0) TCGA-06-5416-01 7 100364635 100364635 G A ZAN Missense_Mutation p.A1539T 0.21 unknown(0) TCGA-06-5416-01 7 100366291 100366291 C T ZAN Silent p.G1700G 0.49 TCGA-06-5416-01 7 100405048 100405048 T C EPHB4 Missense_Mutation p.D758G 0.20 tolerated(0.08) probably_damaging(1) TCGA-06-5416-01 7 100420175 100420175 G T EPHB4 Missense_Mutation p.L176M 0.19 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 7 100456783 100456783 G A SLC12A9 Missense_Mutation p.R326K 0.18 deleterious(0.04) benign(0.259) TCGA-06-5416-01 7 100473249 100473249 G T SRRT Missense_Mutation p.R13M 0.24 deleterious(0) unknown(0) TCGA-06-5416-01 7 100483512 100483512 G A SRRT Missense_Mutation p.D470N 0.42 deleterious(0.04) benign(0.051) TCGA-06-5416-01 7 100490194 100490194 G A ACHE Silent p.V438V 0.17 TCGA-06-5416-01 7 100552362 100552362 C T MUC3A Silent p.S371S 0.15 TCGA-06-5416-01 7 100552472 100552472 T C MUC3A Missense_Mutation p.V408A 0.10 tolerated(0.25) benign(0.068) TCGA-06-5416-01 7 100674888 100674888 C T MUC17 Missense_Mutation p.A64V 0.23 benign(0.011) TCGA-06-5416-01 7 100676012 100676012 G T MUC17 Missense_Mutation p.D439Y 0.19 benign(0.044) TCGA-06-5416-01 7 100676905 100676905 T G MUC17 Missense_Mutation p.S736R 0.20 probably_damaging(0.96) TCGA-06-5416-01 7 100678062 100678062 C A MUC17 Missense_Mutation p.S1122Y 0.23 unknown(0) TCGA-06-5416-01 7 100680080 100680080 G T MUC17 Missense_Mutation p.G1795C 0.19 probably_damaging(0.965) TCGA-06-5416-01 7 100681870 100681870 T G MUC17 Silent p.T2391T 0.46 TCGA-06-5416-01 7 100682056 100682056 A G MUC17 Silent p.E2453E 0.44 TCGA-06-5416-01 7 100683268 100683268 C T MUC17 Silent p.I2857I 0.17 TCGA-06-5416-01 7 100685469 100685469 C A MUC17 Missense_Mutation p.S3591Y 0.48 benign(0.001) TCGA-06-5416-01 7 100686312 100686312 G T MUC17 Missense_Mutation p.R3872I 0.20 benign(0.001) TCGA-06-5416-01 7 100695100 100695100 G T MUC17 Missense_Mutation p.M4320I 0.23 unknown(0) TCGA-06-5416-01 7 100807419 100807419 G A VGF Missense_Mutation p.P236S 0.09 tolerated_low_confidence(0.32) benign(0.301) TCGA-06-5416-01 7 100815325 100815325 G A NAT16 3'UTR 0.21 TCGA-06-5416-01 7 100816683 100816683 G A NAT16 Missense_Mutation p.S144L 0.18 deleterious(0.05) benign(0.034) TCGA-06-5416-01 7 101747716 101747716 G A CUX1 Silent p.Q180Q 0.44 TCGA-06-5416-01 7 101821917 101821917 G A CUX1 Missense_Mutation p.A344T 0.28 tolerated(0.24) unknown(0) TCGA-06-5416-01 7 101882808 101882808 C T CUX1 Silent p.L1288L 0.22 TCGA-06-5416-01 7 101926060 101926060 C T SH2B2 5'Flank 0.24 TCGA-06-5416-01 7 101943938 101943938 C T SH2B2 Missense_Mutation p.A78V 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 101944528 101944528 G A SH2B2 Missense_Mutation p.E275K 0.50 deleterious(0.02) benign(0.124) TCGA-06-5416-01 7 102038133 102038133 C T PRKRIP1 Nonsense_Mutation p.R65* 0.15 TCGA-06-5416-01 7 102524101 102524101 G A FBXL13 Missense_Mutation p.S380L 0.20 deleterious(0) possibly_damaging(0.573) TCGA-06-5416-01 7 102574801 102574801 A C LRRC17 Missense_Mutation p.E147D 0.39 tolerated(0.1) probably_damaging(0.988) TCGA-06-5416-01 7 102604065 102604065 C T FBXL13 Silent p.V213V 0.19 TCGA-06-5416-01 7 102665608 102665608 C A FBXL13 Nonsense_Mutation p.E133* 0.28 TCGA-06-5416-01 7 102716301 102716301 T C ARMC10 Missense_Mutation p.S73P 0.22 tolerated(0.33) benign(0.05) TCGA-06-5416-01 7 102739147 102739147 G T ARMC10 3'UTR 0.30 TCGA-06-5416-01 7 102760046 102760046 G A NAPEPLD Missense_Mutation p.P307S 0.44 deleterious(0.02) possibly_damaging(0.89) TCGA-06-5416-01 7 102948086 102948086 C T PMPCB Silent p.F260F 0.21 TCGA-06-5416-01 7 102949402 102949402 C T PMPCB Missense_Mutation p.R285C 0.45 deleterious(0.01) possibly_damaging(0.792) TCGA-06-5416-01 7 102952597 102952597 C A PMPCB Intron 0.18 TCGA-06-5416-01 7 102953387 102953387 C T DNAJC2 Intron 0.37 TCGA-06-5416-01 7 102957307 102957307 A G DNAJC2 Missense_Mutation p.V466A 0.19 deleterious(0.04) possibly_damaging(0.615) TCGA-06-5416-01 7 102964088 102964088 C A DNAJC2 Nonsense_Mutation p.E226* 0.21 TCGA-06-5416-01 7 102982372 102982372 C A DNAJC2 Nonsense_Mutation p.G32* 0.19 TCGA-06-5416-01 7 103032106 103032106 C T SLC26A5 Missense_Mutation p.R399Q 0.36 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 7 103113284 103113284 C T RELN Missense_Mutation p.R3453Q 0.39 deleterious_low_confidence(0.03) probably_damaging(0.921) TCGA-06-5416-01 7 103126838 103126838 G A RELN Silent p.H3263H 0.24 TCGA-06-5416-01 7 103136203 103136203 G A RELN Silent p.L3112L 0.22 TCGA-06-5416-01 7 103137131 103137131 G A RELN Missense_Mutation p.A3012V 0.36 deleterious(0.03) possibly_damaging(0.595) TCGA-06-5416-01 7 103151429 103151429 C A RELN Missense_Mutation p.D2715Y 0.24 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 7 103159910 103159910 G A RELN Silent p.F2574F 0.16 TCGA-06-5416-01 7 103162616 103162616 A G RELN Silent p.C2507C 0.18 TCGA-06-5416-01 7 103214589 103214589 G A RELN Silent p.G1487G 0.21 TCGA-06-5416-01 7 103230089 103230089 C T RELN Missense_Mutation p.E1367K 0.41 tolerated(0.53) benign(0.011) TCGA-06-5416-01 7 103234229 103234229 G A RELN Missense_Mutation p.A1271V 0.22 tolerated(0.24) benign(0.089) TCGA-06-5416-01 7 103234940 103234940 C T RELN Splice_Site p.X1180_splice 0.18 TCGA-06-5416-01 7 103276804 103276804 G T RELN Nonsense_Mutation p.Y727* 0.49 TCGA-06-5416-01 7 103322668 103322668 C T RELN Missense_Mutation p.G395E 0.22 tolerated_low_confidence(0.06) probably_damaging(0.999) TCGA-06-5416-01 7 104748042 104748042 G A KMT2E Silent p.R1046R 0.35 TCGA-06-5416-01 7 104749531 104749531 A G KMT2E Missense_Mutation p.D1204G 0.14 deleterious_low_confidence(0.02) benign(0.006) TCGA-06-5416-01 7 104753304 104753304 C A KMT2E Missense_Mutation p.Q1701K 0.15 deleterious_low_confidence(0) benign(0.013) TCGA-06-5416-01 7 104758346 104758346 A G SRPK2 Missense_Mutation p.M680T 0.44 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 7 104844204 104844204 C T SRPK2 Missense_Mutation p.V34I 0.43 tolerated(0.27) unknown(0) TCGA-06-5416-01 7 105142895 105142895 G A PUS7 Silent p.Y234Y 0.46 TCGA-06-5416-01 7 105146405 105146405 A G PUS7 Silent p.I194I 0.44 TCGA-06-5416-01 7 105205777 105205777 C T RINT1 Missense_Mutation p.S647L 0.20 deleterious(0) possibly_damaging(0.686) TCGA-06-5416-01 7 105624700 105624700 G A CDHR3 Missense_Mutation p.D160N 0.13 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 105894926 105894926 T A NAMPT Missense_Mutation p.M372L 0.44 deleterious(0.01) benign(0.001) TCGA-06-5416-01 7 105913032 105913032 G T NAMPT Missense_Mutation p.L131I 0.17 deleterious(0) possibly_damaging(0.589) TCGA-06-5416-01 7 106509276 106509276 C T PIK3CG Missense_Mutation p.P424S 0.46 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 106509717 106509717 G T PIK3CG Missense_Mutation p.D571Y 0.17 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 7 106513235 106513235 C T PIK3CG Silent p.F713F 0.28 TCGA-06-5416-01 7 106526628 106526628 G A PIK3CG Missense_Mutation p.S974N 0.28 tolerated(0.19) benign(0.405) TCGA-06-5416-01 7 106710741 106710741 G A PRKAR2B Missense_Mutation p.R108Q 0.48 deleterious(0.03) benign(0.058) TCGA-06-5416-01 7 106826382 106826382 G A HBP1 Missense_Mutation p.E179K 0.45 tolerated(0.14) benign(0.121) TCGA-06-5416-01 7 106841987 106841987 G T HBP1 3'UTR 0.21 TCGA-06-5416-01 7 106898828 106898828 G A COG5 Missense_Mutation p.L557F 0.44 tolerated(0.06) benign(0.059) TCGA-06-5416-01 7 107002797 107002797 T C COG5 Missense_Mutation p.N333D 0.39 deleterious(0.03) probably_damaging(0.917) TCGA-06-5416-01 7 107013101 107013101 T G COG5 Missense_Mutation p.E289D 0.24 tolerated(0.7) benign(0.001) TCGA-06-5416-01 7 107013185 107013185 T G COG5 Silent p.T261T 0.20 TCGA-06-5416-01 7 107053057 107053057 C A COG5 Missense_Mutation p.D218Y 0.27 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 7 107188588 107188588 C T COG5 Missense_Mutation p.V160I 0.12 tolerated(0.35) benign(0.234) TCGA-06-5416-01 7 107217898 107217898 A G DUS4L Missense_Mutation p.M283V 0.22 tolerated(0.94) benign(0.035) TCGA-06-5416-01 7 107224388 107224388 T G BCAP29 Missense_Mutation p.F52V 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 107315542 107315542 C A SLC26A4 Silent p.L251L 0.18 TCGA-06-5416-01 7 107329633 107329633 C T SLC26A4 Silent p.I379I 0.27 TCGA-06-5416-01 7 107350498 107350498 G T SLC26A4 Splice_Site p.X697_splice 0.23 TCGA-06-5416-01 7 107350590 107350590 C A SLC26A4 Silent p.L727L 0.18 TCGA-06-5416-01 7 107395925 107395925 G T CBLL1 Missense_Mutation p.K143N 0.24 deleterious(0.04) benign(0.284) TCGA-06-5416-01 7 107406255 107406255 T G SLC26A3 3'UTR 0.46 TCGA-06-5416-01 7 107423691 107423691 C T SLC26A3 Missense_Mutation p.V360I 0.21 tolerated(0.19) probably_damaging(0.999) TCGA-06-5416-01 7 107434909 107434909 A G SLC26A3 Missense_Mutation p.Y16H 0.19 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 7 107580480 107580480 C T LAMB1 Missense_Mutation p.A1239T 0.45 tolerated(0.48) probably_damaging(0.984) TCGA-06-5416-01 7 107580491 107580491 G A LAMB1 Missense_Mutation p.A1235V 0.17 tolerated(0.1) benign(0.102) TCGA-06-5416-01 7 107596053 107596053 C T LAMB1 Missense_Mutation p.D905N 0.43 tolerated(0.87) benign(0.2) TCGA-06-5416-01 7 107599756 107599756 G A LAMB1 Silent p.C876C 0.41 TCGA-06-5416-01 7 107613476 107613476 C T LAMB1 Missense_Mutation p.R508Q 0.43 deleterious(0.01) probably_damaging(0.987) TCGA-06-5416-01 7 107621059 107621059 C A LAMB1 Nonsense_Mutation p.G292* 0.18 TCGA-06-5416-01 7 107692632 107692632 C A LAMB4 Nonsense_Mutation p.E1276* 0.23 TCGA-06-5416-01 7 107698357 107698357 G A LAMB4 Missense_Mutation p.P1100L 0.15 tolerated(0.18) benign(0.013) TCGA-06-5416-01 7 107703398 107703398 G A LAMB4 Missense_Mutation p.P1035S 0.35 tolerated(0.1) possibly_damaging(0.544) TCGA-06-5416-01 7 107732075 107732075 G T LAMB4 Missense_Mutation p.P566H 0.21 deleterious(0) possibly_damaging(0.614) TCGA-06-5416-01 7 107748129 107748129 C T LAMB4 Missense_Mutation p.D180N 0.35 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 7 107756476 107756476 C A LAMB4 Missense_Mutation p.Q55H 0.44 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 7 107763620 107763620 G T LAMB4 5'UTR 0.14 TCGA-06-5416-01 7 107790351 107790351 A C NRCAM 3'UTR 0.42 TCGA-06-5416-01 7 1097459 1097459 T C GPR146 Missense_Mutation p.V103A 0.40 deleterious(0.01) possibly_damaging(0.509) TCGA-06-5416-01 7 10978492 10978492 C T NDUFA4 Missense_Mutation p.G25E 0.17 tolerated(0.06) benign(0.309) TCGA-06-5416-01 7 110763449 110763449 C A LRRN3 Missense_Mutation p.N207K 0.16 deleterious(0) possibly_damaging(0.793) TCGA-06-5416-01 7 111368700 111368700 G A DOCK4 Missense_Mutation p.S1844L 0.47 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-06-5416-01 7 111381165 111381165 T G DOCK4 Missense_Mutation p.E1666D 0.42 tolerated(0.7) benign(0.179) TCGA-06-5416-01 7 111585848 111585848 C T DOCK4 Missense_Mutation p.R236K 0.55 tolerated(0.31) benign(0.062) TCGA-06-5416-01 7 111617329 111617329 G A DOCK4 Nonsense_Mutation p.R187* 0.44 TCGA-06-5416-01 7 112127026 112127026 G A LSMEM1 Missense_Mutation p.S59N 0.43 tolerated(0.7) benign(0.004) TCGA-06-5416-01 7 112127076 112127076 G A LSMEM1 Missense_Mutation p.A76T 0.43 tolerated(0.1) benign(0.007) TCGA-06-5416-01 7 113517646 113517646 C T PPP1R3A 3'UTR 0.21 TCGA-06-5416-01 7 113518832 113518832 G A PPP1R3A Missense_Mutation p.A772V 0.20 tolerated(0.08) benign(0.348) TCGA-06-5416-01 7 113520023 113520023 G T PPP1R3A Missense_Mutation p.S375Y 0.42 deleterious(0.01) probably_damaging(0.911) TCGA-06-5416-01 7 113558758 113558758 A C PPP1R3A Missense_Mutation p.I98M 0.39 deleterious(0.01) possibly_damaging(0.535) TCGA-06-5416-01 7 114293996 114293996 G A FOXP2 Missense_Mutation p.E425K 0.19 deleterious(0) unknown(0) TCGA-06-5416-01 7 114298260 114298260 T C FOXP2 Missense_Mutation p.V494A 0.25 deleterious(0.02) unknown(0) TCGA-06-5416-01 7 114655941 114655941 C T MDFIC Silent p.D340D 0.17 TCGA-06-5416-01 7 11500300 11500300 C T THSD7A Missense_Mutation p.R865Q 0.22 deleterious(0.02) benign(0.006) TCGA-06-5416-01 7 115580506 115580506 A - TFEC 3'UTR 0.24 TCGA-06-5416-01 7 115580694 115580694 C A TFEC Missense_Mutation p.D319Y 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 115890431 115890431 C T TES Missense_Mutation p.P195S 0.18 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 7 115897438 115897438 C A TES Missense_Mutation p.L390M 0.42 tolerated(0.21) probably_damaging(0.915) TCGA-06-5416-01 7 116139874 116139874 C T CAV2 Silent p.F13F 0.59 TCGA-06-5416-01 7 11633114 11633114 C A THSD7A Missense_Mutation p.E346D 0.23 tolerated(1) benign(0.001) TCGA-06-5416-01 7 116340176 116340176 C T MET Silent p.F346F 0.37 TCGA-06-5416-01 7 116371755 116371755 C T MET Missense_Mutation p.R412C 0.06 tolerated(0.12) possibly_damaging(0.885) TCGA-06-5416-01 7 116371798 116371798 G A MET Missense_Mutation p.R426H 0.19 deleterious(0.01) possibly_damaging(0.885) TCGA-06-5416-01 7 116411905 116411905 C A MET Missense_Mutation p.L982M 0.41 deleterious(0.05) probably_damaging(0.91) TCGA-06-5416-01 7 116418974 116418974 A G MET Missense_Mutation p.H1180R 0.45 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 7 116544375 116544375 A G CAPZA2 Missense_Mutation p.T122A 0.41 tolerated(0.85) benign(0.001) TCGA-06-5416-01 7 11676139 11676139 G A THSD7A Missense_Mutation p.L214F 0.49 deleterious(0.03) probably_damaging(0.953) TCGA-06-5416-01 7 117024819 117024819 C T ASZ1 Silent p.K216K 0.21 TCGA-06-5416-01 7 117149138 117149138 C A CFTR Missense_Mutation p.A72D 0.50 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 7 117199610 117199610 C T CFTR Silent p.S495S 0.21 TCGA-06-5416-01 7 117250606 117250606 G A CFTR Missense_Mutation p.V1008I 0.44 tolerated(0.52) benign(0.145) TCGA-06-5416-01 7 117267731 117267731 C T CFTR Silent p.G1208G 0.45 TCGA-06-5416-01 7 117358086 117358086 G A CTTNBP2 Missense_Mutation p.P1578S 0.37 tolerated(0.09) benign(0.022) TCGA-06-5416-01 7 117375021 117375021 G A CTTNBP2 Silent p.G1274G 0.52 TCGA-06-5416-01 7 117828331 117828331 G T NAA38 Splice_Site p.X25_splice 0.15 TCGA-06-5416-01 7 117828342 117828342 A C NAA38 Missense_Mutation p.K28T 0.15 deleterious(0.01) probably_damaging(0.99) TCGA-06-5416-01 7 1197381 1197381 G T ZFAND2A Missense_Mutation p.L21I 0.48 deleterious(0) possibly_damaging(0.894) TCGA-06-5416-01 7 119915527 119915527 G T KCND2 Missense_Mutation p.D281Y 0.46 deleterious(0.05) probably_damaging(0.992) TCGA-06-5416-01 7 120373046 120373046 T C KCND2 Missense_Mutation p.V402A 0.18 deleterious(0.03) probably_damaging(0.96) TCGA-06-5416-01 7 120381629 120381629 C T KCND2 Silent p.S440S 0.16 TCGA-06-5416-01 7 120446698 120446698 C A TSPAN12 Nonsense_Mutation p.E173* 0.21 TCGA-06-5416-01 7 120593410 120593410 G T ING3 Missense_Mutation p.K51N 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 7 120972019 120972019 G A WNT16 Splice_Site p.X211_splice 0.17 TCGA-06-5416-01 7 121608033 121608033 G A PTPRZ1 Silent p.K51K 0.23 TCGA-06-5416-01 7 121623720 121623720 G T PTPRZ1 Silent p.G207G 0.37 TCGA-06-5416-01 7 121674407 121674407 G T PTPRZ1 Missense_Mutation p.K1753N 0.17 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 7 121718976 121718976 G A AASS Missense_Mutation p.P809S 0.16 tolerated(0.71) probably_damaging(0.978) TCGA-06-5416-01 7 121726130 121726130 T A AASS Missense_Mutation p.K707I 0.43 tolerated(0.26) possibly_damaging(0.493) TCGA-06-5416-01 7 121758392 121758392 A C AASS Missense_Mutation p.F219C 0.41 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 7 121941898 121941898 G A FEZF1 3'UTR 0.44 TCGA-06-5416-01 7 122261611 122261611 G T CADPS2 Missense_Mutation p.S343Y 0.20 deleterious(0) possibly_damaging(0.615) TCGA-06-5416-01 7 122635452 122635452 G A TAS2R16 Silent p.C79C 0.41 TCGA-06-5416-01 7 122635482 122635482 G A TAS2R16 Silent p.C69C 0.45 TCGA-06-5416-01 7 122768942 122768942 G A SLC13A1 Nonsense_Mutation p.R364* 0.19 TCGA-06-5416-01 7 122774567 122774567 G A SLC13A1 Missense_Mutation p.R277C 0.25 deleterious(0) possibly_damaging(0.67) TCGA-06-5416-01 7 123302466 123302466 G A LMOD2 Missense_Mutation p.E276K 0.22 deleterious(0) possibly_damaging(0.677) TCGA-06-5416-01 7 123302545 123302545 G A LMOD2 Missense_Mutation p.R302H 0.49 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 7 123508690 123508690 T C HYAL4 Silent p.H121H 0.21 TCGA-06-5416-01 7 123509177 123509177 G T HYAL4 Nonsense_Mutation p.E284* 0.40 TCGA-06-5416-01 7 123594182 123594182 G A SPAM1 Silent p.E186E 0.25 TCGA-06-5416-01 7 123599930 123599930 A C SPAM1 Missense_Mutation p.Q479H 0.44 tolerated_low_confidence(0.17) benign(0.126) TCGA-06-5416-01 7 124386662 124386662 A G GPR37 Missense_Mutation p.Y587H 0.22 tolerated(0.12) benign(0.006) TCGA-06-5416-01 7 124499067 124499067 G A POT1 Silent p.L216L 0.17 TCGA-06-5416-01 7 126086179 126086179 C A GRM8 Splice_Site p.X893_splice 0.42 TCGA-06-5416-01 7 126173250 126173250 C T GRM8 Missense_Mutation p.R729Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 126883239 126883239 C T GRM8 Missense_Mutation p.R7Q 0.45 tolerated_low_confidence(0.2) benign(0) TCGA-06-5416-01 7 127015008 127015008 C A ZNF800 Nonsense_Mutation p.E128* 0.54 TCGA-06-5416-01 7 127229573 127229573 C T ARF5 Silent p.I61I 0.40 TCGA-06-5416-01 7 127231097 127231097 C T ARF5 Silent p.S137S 0.41 TCGA-06-5416-01 7 127235508 127235508 C T FSCN3 Missense_Mutation p.R98C 0.21 tolerated(0.05) possibly_damaging(0.873) TCGA-06-5416-01 7 12728326 12728326 A C ARL4A Missense_Mutation p.K149N 0.42 deleterious(0.03) benign(0.197) TCGA-06-5416-01 7 127342496 127342496 C T SND1 Silent p.I199I 0.19 TCGA-06-5416-01 7 127637778 127637778 C T SND1 Intron 0.27 TCGA-06-5416-01 7 127668680 127668680 C A LRRC4 3'UTR 0.52 TCGA-06-5416-01 7 127669113 127669113 C A LRRC4 Missense_Mutation p.K527N 0.25 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 127957772 127957772 C T RBM28 Silent p.E576E 0.37 TCGA-06-5416-01 7 127975708 127975708 T C RBM28 Missense_Mutation p.K279E 0.17 tolerated(1) benign(0) TCGA-06-5416-01 7 128034972 128034972 C A IMPDH1 Missense_Mutation p.K507N 0.22 tolerated(0.07) benign(0.178) TCGA-06-5416-01 7 128315716 128315716 G T FAM71F2 Missense_Mutation p.E56D 0.15 tolerated_low_confidence(0.58) benign(0.009) TCGA-06-5416-01 7 128369976 128369976 G T FAM71F1 Missense_Mutation p.D292Y 0.49 deleterious(0) possibly_damaging(0.906) TCGA-06-5416-01 7 128412672 128412672 C A OPN1SW Missense_Mutation p.M323I 0.40 tolerated(0.48) benign(0.001) TCGA-06-5416-01 7 128414647 128414647 C T OPN1SW Missense_Mutation p.E198K 0.14 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 7 128445491 128445491 G T CCDC136 Missense_Mutation p.M287I 0.18 deleterious(0.04) benign(0.132) TCGA-06-5416-01 7 128450332 128450332 G A CCDC136 Missense_Mutation p.R647Q 0.27 tolerated(0.44) benign(0.013) TCGA-06-5416-01 7 128477804 128477804 G A FLNC Missense_Mutation p.E322K 0.32 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 128482916 128482916 G A FLNC Missense_Mutation p.D820N 0.14 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 7 128486389 128486389 C T FLNC Silent p.V1333V 0.27 TCGA-06-5416-01 7 128494540 128494540 C T FLNC Silent p.V2267V 0.33 TCGA-06-5416-01 7 128852267 128852267 T G SMO Missense_Mutation p.L780R 0.20 deleterious_low_confidence(0) possibly_damaging(0.832) TCGA-06-5416-01 7 128852370 128852370 C A SMO 3'UTR 0.22 TCGA-06-5416-01 7 129008284 129008284 C T AHCYL2 Intron 0.49 TCGA-06-5416-01 7 129093096 129093096 C T STRIP2 Silent p.V146V 0.40 TCGA-06-5416-01 7 129349050 129349050 C A NRF1 Missense_Mutation p.R248S 0.21 deleterious(0) benign(0.403) TCGA-06-5416-01 7 129663380 129663380 G A ZC3HC1 Nonsense_Mutation p.R402* 0.25 TCGA-06-5416-01 7 129680900 129680900 G A ZC3HC1 Silent p.L100L 0.20 TCGA-06-5416-01 7 129770616 129770616 A C KLHDC10 3'UTR 0.23 TCGA-06-5416-01 7 129832580 129832580 G A TMEM209 Silent p.Y219Y 0.44 TCGA-06-5416-01 7 129843910 129843910 C T TMEM209 Missense_Mutation p.R15K 0.37 tolerated(0.82) benign(0.004) TCGA-06-5416-01 7 129933038 129933038 C T CPA4 Silent p.F6F 0.40 TCGA-06-5416-01 7 129938597 129938597 T G CPA4 Missense_Mutation p.L27W 0.46 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 7 129939210 129939210 G A CPA4 Missense_Mutation p.G84D 0.38 tolerated(0.16) benign(0.026) TCGA-06-5416-01 7 129945745 129945745 C T CPA4 Silent p.I192I 0.19 TCGA-06-5416-01 7 129950636 129950636 C T CPA4 Missense_Mutation p.A268V 0.50 deleterious(0.01) benign(0.21) TCGA-06-5416-01 7 129951922 129951922 G A CPA4 Silent p.S346S 0.36 TCGA-06-5416-01 7 130001023 130001023 G A CPA5 Missense_Mutation p.D158N 0.26 tolerated(0.91) benign(0.014) TCGA-06-5416-01 7 130008537 130008537 G A CPA5 3'UTR 0.29 TCGA-06-5416-01 7 130021639 130021639 G A CPA1 Missense_Mutation p.A106T 0.57 tolerated(0.38) benign(0.001) TCGA-06-5416-01 7 130023569 130023569 C T CPA1 Silent p.L210L 0.20 TCGA-06-5416-01 7 130024394 130024394 G A CPA1 Silent p.K238K 0.41 TCGA-06-5416-01 7 130039926 130039926 C A CEP41 Missense_Mutation p.K309N 0.18 tolerated(0.07) benign(0.08) TCGA-06-5416-01 7 130137837 130137837 G A MEST Missense_Mutation p.G108S 0.17 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 7 130143830 130143830 C T MEST Silent p.L295L 0.22 TCGA-06-5416-01 7 130144963 130144963 G T MEST 3'UTR 0.25 TCGA-06-5416-01 7 130147653 130147653 G A MEST 3'Flank 0.41 TCGA-06-5416-01 7 130295938 130295938 C T COPG2 Missense_Mutation p.R208Q 0.18 deleterious(0.01) probably_damaging(0.91) TCGA-06-5416-01 7 130368494 130368494 A T TSGA13 Missense_Mutation p.S14T 0.22 tolerated(0.36) benign(0.005) TCGA-06-5416-01 7 130418143 130418143 C T KLF14 Missense_Mutation p.D240N 0.28 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 7 131815219 131815219 G A PLXNA4 3'UTR 0.25 TCGA-06-5416-01 7 131853324 131853324 C T PLXNA4 Missense_Mutation p.G1342D 0.23 tolerated(0.15) probably_damaging(1) TCGA-06-5416-01 7 131866335 131866335 G A PLXNA4 Silent p.P1099P 0.21 TCGA-06-5416-01 7 131866377 131866377 G T PLXNA4 Silent p.I1085I 0.37 TCGA-06-5416-01 7 131870208 131870208 T C PLXNA4 Missense_Mutation p.Y1003C 0.27 deleterious(0.01) benign(0.421) TCGA-06-5416-01 7 131887528 131887528 G A PLXNA4 Silent p.F821F 0.21 TCGA-06-5416-01 7 131908300 131908300 C T PLXNA4 Missense_Mutation p.V695M 0.26 deleterious(0) possibly_damaging(0.766) TCGA-06-5416-01 7 131925897 131925897 C T PLXNA4 Missense_Mutation p.G511D 0.23 tolerated(0.27) benign(0.438) TCGA-06-5416-01 7 132169656 132169656 G T PLXNA4 Intron 0.21 TCGA-06-5416-01 7 132192613 132192613 G A PLXNA4 Silent p.L280L 0.19 TCGA-06-5416-01 7 132709346 132709346 C T CHCHD3 Missense_Mutation p.A71T 0.24 deleterious(0.05) possibly_damaging(0.877) TCGA-06-5416-01 7 133164812 133164812 C T EXOC4 Missense_Mutation p.S446L 0.20 tolerated(0.21) benign(0.061) TCGA-06-5416-01 7 133821807 133821807 C T LRGUK Missense_Mutation p.A110V 0.14 tolerated(1) benign(0.006) TCGA-06-5416-01 7 133984974 133984974 C A SLC35B4 Missense_Mutation p.R176M 0.23 tolerated(0.17) benign(0.309) TCGA-06-5416-01 7 134254206 134254206 C A AKR1B15 Silent p.A120A 0.26 TCGA-06-5416-01 7 134927541 134927541 T C STRA8 Silent p.V89V 0.19 TCGA-06-5416-01 7 135107021 135107021 G A CNOT4 Nonsense_Mutation p.Q86* 0.20 TCGA-06-5416-01 7 135122941 135122941 T C CNOT4 Missense_Mutation p.T47A 0.23 deleterious(0) probably_damaging(0.92) TCGA-06-5416-01 7 135242674 135242674 C T NUP205 5'UTR 0.41 TCGA-06-5416-01 7 135291531 135291531 C T NUP205 Missense_Mutation p.R980C 0.21 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 7 135301402 135301402 G T NUP205 Splice_Site p.X1154_splice 0.38 TCGA-06-5416-01 7 135310077 135310077 G T NUP205 Missense_Mutation p.A1549S 0.44 tolerated(0.16) benign(0.369) TCGA-06-5416-01 7 135312833 135312833 G A NUP205 Missense_Mutation p.A1636T 0.40 tolerated(0.67) benign(0.01) TCGA-06-5416-01 7 135315164 135315164 T C NUP205 Missense_Mutation p.S1669P 0.19 deleterious(0.04) possibly_damaging(0.906) TCGA-06-5416-01 7 135333182 135333182 G T NUP205 Nonsense_Mutation p.E1973* 0.26 TCGA-06-5416-01 7 135406155 135406155 G T SLC13A4 Silent p.L72L 0.23 TCGA-06-5416-01 7 135433291 135433291 T C FAM180A Missense_Mutation p.Y13C 0.23 tolerated(0.18) possibly_damaging(0.885) TCGA-06-5416-01 7 135433416 135433416 G T FAM180A 5'UTR 0.27 TCGA-06-5416-01 7 136700201 136700201 T G CHRM2 Missense_Mutation p.L197V 0.19 tolerated(0.05) probably_damaging(0.986) TCGA-06-5416-01 7 136700229 136700229 A G CHRM2 Missense_Mutation p.Y206C 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 137172365 137172365 G A DGKI Silent p.R791R 0.17 TCGA-06-5416-01 7 138269730 138269730 A C TRIM24 3'UTR 0.09 TCGA-06-5416-01 7 138310755 138310755 C T SVOPL Missense_Mutation p.V408I 0.44 tolerated(0.44) possibly_damaging(0.456) TCGA-06-5416-01 7 138312104 138312104 C T SVOPL Missense_Mutation p.C391Y 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 138413567 138413567 G A ATP6V0A4 Missense_Mutation p.S650F 0.50 deleterious(0) possibly_damaging(0.877) TCGA-06-5416-01 7 138455966 138455966 C T ATP6V0A4 Silent p.E9E 0.44 TCGA-06-5416-01 7 138486087 138486087 A G TMEM213 Missense_Mutation p.N33S 0.11 tolerated(0.56) possibly_damaging(0.486) TCGA-06-5416-01 7 138487845 138487845 G A TMEM213 3'UTR 0.49 TCGA-06-5416-01 7 138566267 138566267 C T KIAA1549 Missense_Mutation p.D1366N 0.20 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 7 138579263 138579263 C A KIAA1549 Missense_Mutation p.R1286M 0.38 deleterious(0) probably_damaging(0.953) TCGA-06-5416-01 7 138583803 138583803 C A KIAA1549 Nonsense_Mutation p.E1249* 0.17 TCGA-06-5416-01 7 138602901 138602901 C T KIAA1549 Missense_Mutation p.V491I 0.18 tolerated(0.08) benign(0.016) TCGA-06-5416-01 7 138603341 138603341 G T KIAA1549 Missense_Mutation p.T344N 0.20 tolerated(0.06) benign(0.115) TCGA-06-5416-01 7 138603489 138603489 C T KIAA1549 Missense_Mutation p.D295N 0.39 tolerated(0.23) benign(0.001) TCGA-06-5416-01 7 138603856 138603856 A C KIAA1549 Silent p.V172V 0.19 TCGA-06-5416-01 7 138764321 138764321 C A ZC3HAV1 Nonsense_Mutation p.E456* 0.18 TCGA-06-5416-01 7 138833067 138833067 G A TTC26 Missense_Mutation p.A221T 0.22 deleterious(0) probably_damaging(0.983) TCGA-06-5416-01 7 138968416 138968416 C T UBN2 Missense_Mutation p.S922L 0.18 tolerated_low_confidence(0.06) benign(0.073) TCGA-06-5416-01 7 139026167 139026167 G T LUC7L2 Nonsense_Mutation p.G13* 0.21 TCGA-06-5416-01 7 139102352 139102352 G A LUC7L2 Missense_Mutation p.R359Q 0.38 tolerated(0.17) unknown(0) TCGA-06-5416-01 7 139305225 139305225 G T HIPK2 Missense_Mutation p.F568L 0.21 tolerated(0.28) benign(0.013) TCGA-06-5416-01 7 13940387 13940387 G A ETV1 Silent p.Y396Y 0.16 TCGA-06-5416-01 7 139746771 139746771 C T PARP12 Missense_Mutation p.R300Q 0.21 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 7 139757800 139757800 C T PARP12 Missense_Mutation p.E121K 0.20 tolerated(0.86) benign(0.023) TCGA-06-5416-01 7 140035254 140035254 G T SLC37A3 Missense_Mutation p.F481L 0.12 tolerated(0.62) benign(0) TCGA-06-5416-01 7 140159609 140159609 C T MKRN1 Missense_Mutation p.E148K 0.22 deleterious(0.04) benign(0.029) TCGA-06-5416-01 7 140221807 140221807 G A DENND2A Missense_Mutation p.S920L 0.45 tolerated(0.73) benign(0.005) TCGA-06-5416-01 7 14027732 14027732 C A ETV1 Missense_Mutation p.D38Y 0.17 deleterious(0) probably_damaging(0.968) TCGA-06-5416-01 7 140302051 140302051 C T DENND2A Silent p.K49K 0.48 TCGA-06-5416-01 7 140494125 140494125 C A BRAF Nonsense_Mutation p.E375* 0.20 TCGA-06-5416-01 7 141416026 141416026 G T WEE2 Nonsense_Mutation p.E182* 0.16 TCGA-06-5416-01 7 141424062 141424062 A C WEE2 Missense_Mutation p.E403A 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 141536998 141536998 G A PRSS37 Nonsense_Mutation p.R161* 0.24 TCGA-06-5416-01 7 141672769 141672769 C T TAS2R38 Missense_Mutation p.A241T 0.20 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 7 141747591 141747591 G A MGAM Silent p.K835K 0.50 TCGA-06-5416-01 7 141758014 141758014 G A MGAM Silent p.R1235R 0.20 TCGA-06-5416-01 7 141765179 141765179 G A MGAM Missense_Mutation p.R1510H 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 141952407 141952407 G A PRSS58 Missense_Mutation p.T154I 0.18 deleterious(0.01) possibly_damaging(0.672) TCGA-06-5416-01 7 141955438 141955438 G A PRSS58 Silent p.V32V 0.21 TCGA-06-5416-01 7 142001142 142001142 A C TRBV2 Missense_Mutation p.E45D 0.15 TCGA-06-5416-01 7 142008721 142008721 T C TRBV3-1 Missense_Mutation p.M65T 0.20 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 7 142021352 142021352 C T TRBV5-1 Missense_Mutation p.A111V 0.18 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 7 142028429 142028429 C T TRBV6-1 Nonsense_Mutation p.R55* 0.19 TCGA-06-5416-01 7 142139461 142139461 C T TRBV7-6 Missense_Mutation p.R55Q 0.18 tolerated(0.25) benign(0.018) TCGA-06-5416-01 7 142149057 142149057 C A TRBV5-5 Nonsense_Mutation p.E72* 0.36 TCGA-06-5416-01 7 142168504 142168504 C A TRBV5-4 Missense_Mutation p.E73D 0.44 tolerated(0.14) benign(0.012) TCGA-06-5416-01 7 142176773 142176773 G A TRBV7-4 Silent p.L6L 0.25 TCGA-06-5416-01 7 142180765 142180765 G T TRBV6-5 Missense_Mutation p.L32M 0.10 tolerated(0.08) possibly_damaging(0.714) TCGA-06-5416-01 7 142326788 142326788 A G TRBV19 Missense_Mutation p.Y29C 0.43 deleterious(0.02) possibly_damaging(0.799) TCGA-06-5416-01 7 142334807 142334807 G A TRBV20-1 Missense_Mutation p.E77K 0.44 tolerated(0.71) benign(0) TCGA-06-5416-01 7 142448463 142448463 C T TRBV29-1 Silent p.I19I 0.21 TCGA-06-5416-01 7 142479906 142479906 C A PRSS3P2 Intron 0.11 TCGA-06-5416-01 7 142561847 142561847 C T EPHB6 Missense_Mutation p.R97W 0.44 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 142562020 142562020 G T EPHB6 Missense_Mutation p.K154N 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 142562346 142562346 T C EPHB6 Missense_Mutation p.V263A 0.44 deleterious(0) possibly_damaging(0.574) TCGA-06-5416-01 7 142609791 142609791 C T TRPV5 Missense_Mutation p.V549M 0.23 tolerated(0.08) probably_damaging(0.982) TCGA-06-5416-01 7 142630750 142630750 C T TRPV5 5'UTR 0.29 TCGA-06-5416-01 7 142637653 142637653 C A C7orf34 Silent p.L141L 0.20 TCGA-06-5416-01 7 142651457 142651457 G T KEL Silent p.I246I 0.19 TCGA-06-5416-01 7 142655011 142655011 C T KEL Missense_Mutation p.R192Q 0.40 tolerated(0.76) benign(0.011) TCGA-06-5416-01 7 142659302 142659302 C T KEL 5'UTR 0.21 TCGA-06-5416-01 7 142659379 142659379 G A KEL 5'UTR 0.50 TCGA-06-5416-01 7 142961658 142961658 C A GSTK1 Missense_Mutation p.L58M 0.43 tolerated(1) benign(0.095) TCGA-06-5416-01 7 143048832 143048832 C A CLCN1 Missense_Mutation p.P914H 0.41 tolerated_low_confidence(0.08) benign(0.182) TCGA-06-5416-01 7 143140835 143140835 C T TAS2R60 Missense_Mutation p.A97V 0.22 tolerated(0.1) benign(0.197) TCGA-06-5416-01 7 143573611 143573611 G T FAM115A Missense_Mutation p.L31I 0.17 deleterious(0.02) probably_damaging(0.948) TCGA-06-5416-01 7 143701517 143701517 G A OR6B1 Missense_Mutation p.R143H 0.53 tolerated(0.39) benign(0.004) TCGA-06-5416-01 7 143771340 143771340 G T OR2A25 Nonsense_Mutation p.E10* 0.21 TCGA-06-5416-01 7 143806907 143806907 C A OR2A2 Missense_Mutation p.P78T 0.20 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 7 144060902 144060902 G T ARHGEF5 Missense_Mutation p.E380D 0.19 tolerated(0.37) benign(0) TCGA-06-5416-01 7 144068410 144068410 G A ARHGEF5 Missense_Mutation p.A1230T 0.21 tolerated(1) benign(0.016) TCGA-06-5416-01 7 144071919 144071919 T C ARHGEF5 Missense_Mutation p.L1412P 0.19 deleterious(0) possibly_damaging(0.833) TCGA-06-5416-01 7 144364906 144364906 G T TPK1 Intron 0.16 TCGA-06-5416-01 7 146741046 146741046 A G CNTNAP2 Silent p.L150L 0.19 TCGA-06-5416-01 7 147092804 147092804 C T CNTNAP2 Silent p.Y534Y 0.22 TCGA-06-5416-01 7 14724967 14724967 C T DGKB Silent p.Q244Q 0.41 TCGA-06-5416-01 7 147336367 147336367 C A CNTNAP2 Missense_Mutation p.F689L 0.43 tolerated(0.13) benign(0) TCGA-06-5416-01 7 147600754 147600754 C T CNTNAP2 Silent p.I732I 0.16 TCGA-06-5416-01 7 148112555 148112555 C A CNTNAP2 Missense_Mutation p.F1281L 0.45 deleterious(0.01) benign(0.05) TCGA-06-5416-01 7 148288195 148288195 T G C7orf33 Missense_Mutation p.L60V 0.32 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-06-5416-01 7 148454138 148454138 C T CUL1 Nonsense_Mutation p.R127* 0.42 TCGA-06-5416-01 7 148454241 148454241 C T CUL1 Missense_Mutation p.S161L 0.24 deleterious(0.02) benign(0.015) TCGA-06-5416-01 7 148484200 148484200 C A CUL1 Silent p.I489I 0.24 TCGA-06-5416-01 7 148508761 148508761 C A EZH2 Missense_Mutation p.D635Y 0.20 deleterious(0.05) benign(0.016) TCGA-06-5416-01 7 148800594 148800594 G T ZNF425 3'UTR 0.33 TCGA-06-5416-01 7 148800806 148800806 C A ZNF425 Missense_Mutation p.E719D 0.44 tolerated(0.09) possibly_damaging(0.83) TCGA-06-5416-01 7 148802622 148802622 C T ZNF425 Missense_Mutation p.C114Y 0.42 deleterious(0.04) benign(0.293) TCGA-06-5416-01 7 148876490 148876490 G A ZNF398 Missense_Mutation p.R509H 0.48 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 148910879 148910879 G A ZNF282 Missense_Mutation p.G385R 0.17 tolerated(0.36) benign(0.041) TCGA-06-5416-01 7 148947441 148947441 C T ZNF212 Silent p.A72A 0.17 TCGA-06-5416-01 7 149129017 149129017 C A ZNF777 Missense_Mutation p.E782D 0.09 tolerated(0.11) possibly_damaging(0.606) TCGA-06-5416-01 7 149129342 149129342 C T ZNF777 Missense_Mutation p.R674H 0.48 deleterious(0.03) probably_damaging(0.991) TCGA-06-5416-01 7 149191493 149191493 G A ZNF746 Silent p.A42A 0.50 TCGA-06-5416-01 7 149480370 149480370 G A SSPO RNA 0.22 TCGA-06-5416-01 7 149483190 149483190 G A SSPO RNA 0.23 TCGA-06-5416-01 7 149493831 149493831 G A SSPO RNA 0.67 TCGA-06-5416-01 7 149508774 149508774 C T SSPO RNA 0.18 TCGA-06-5416-01 7 150034488 150034488 G A LRRC61 Missense_Mutation p.D180N 0.17 deleterious(0) possibly_damaging(0.718) TCGA-06-5416-01 7 150164371 150164371 G A GIMAP8 Silent p.T195T 0.37 TCGA-06-5416-01 7 150171398 150171398 C T GIMAP8 Silent p.F327F 0.18 TCGA-06-5416-01 7 150217153 150217153 G A GIMAP7 Missense_Mutation p.E31K 0.14 tolerated(0.53) benign(0.004) TCGA-06-5416-01 7 150217185 150217185 A C GIMAP7 Missense_Mutation p.Q41H 0.12 tolerated(1) benign(0.004) TCGA-06-5416-01 7 150217667 150217667 C T GIMAP7 Missense_Mutation p.S202F 0.42 deleterious(0.01) benign(0.429) TCGA-06-5416-01 7 150389524 150389524 G A GIMAP2 Silent p.S50S 0.21 TCGA-06-5416-01 7 150417540 150417540 G A GIMAP1 Missense_Mutation p.V150I 0.47 tolerated(0.1) possibly_damaging(0.643) TCGA-06-5416-01 7 150489219 150489219 G T TMEM176B Silent p.V215V 0.38 TCGA-06-5416-01 7 150554138 150554138 T G AOC1 Missense_Mutation p.S194A 0.15 tolerated(0.12) possibly_damaging(0.721) TCGA-06-5416-01 7 150554484 150554484 G A AOC1 Missense_Mutation p.R309H 0.22 deleterious(0.04) possibly_damaging(0.646) TCGA-06-5416-01 7 150556060 150556060 C T AOC1 Missense_Mutation p.R594C 0.51 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 150695511 150695511 T C NOS3 Missense_Mutation p.Y217H 0.23 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 150728339 150728339 G A ABCB8 Intron 0.25 TCGA-06-5416-01 7 150737609 150737609 G C ABCB8 Missense_Mutation p.A426P 0.19 deleterious(0.01) possibly_damaging(0.622) TCGA-06-5416-01 7 150737617 150737617 C A ABCB8 Silent p.V428V 0.26 TCGA-06-5416-01 7 150737687 150737687 C T ABCB8 Missense_Mutation p.R452C 0.20 tolerated(0.18) possibly_damaging(0.466) TCGA-06-5416-01 7 150761714 150761714 C T SLC4A2 Nonsense_Mutation p.R107* 0.38 TCGA-06-5416-01 7 150771185 150771185 C T SLC4A2 Silent p.G865G 0.22 TCGA-06-5416-01 7 150839123 150839123 G A AGAP3 Missense_Mutation p.R648H 0.18 deleterious(0.01) benign(0.021) TCGA-06-5416-01 7 150841057 150841057 G T AGAP3 3'UTR 0.43 TCGA-06-5416-01 7 150846066 150846066 C T GBX1 Silent p.P234P 0.20 TCGA-06-5416-01 7 150846220 150846220 T G GBX1 Missense_Mutation p.K183T 0.19 deleterious(0) benign(0.398) TCGA-06-5416-01 7 150878339 150878339 G A ASB10 Missense_Mutation p.T264I 0.15 tolerated(0.14) benign(0.039) TCGA-06-5416-01 7 150878496 150878496 C T ASB10 Missense_Mutation p.E212K 0.39 deleterious(0.02) possibly_damaging(0.49) TCGA-06-5416-01 7 150884087 150884087 C T ASB10 Missense_Mutation p.G44E 0.49 deleterious(0.03) benign(0.019) TCGA-06-5416-01 7 150939295 150939295 G T SMARCD3 Missense_Mutation p.F201L 0.26 deleterious(0.02) possibly_damaging(0.638) TCGA-06-5416-01 7 151079002 151079002 C G WDR86 Missense_Mutation p.V310L 0.11 deleterious(0.04) probably_damaging(0.992) TCGA-06-5416-01 7 151135280 151135280 G A CRYGN Silent p.F24F 0.30 TCGA-06-5416-01 7 151262433 151262433 A C PRKAG2 Missense_Mutation p.I479S 0.18 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 7 151573696 151573696 C T PRKAG2 Missense_Mutation p.A4T 0.43 tolerated_low_confidence(1) benign(0.002) TCGA-06-5416-01 7 151699975 151699975 A G GALNTL5 Missense_Mutation p.N279D 0.19 tolerated(0.11) benign(0.004) TCGA-06-5416-01 7 151716810 151716810 G A GALNTL5 Missense_Mutation p.R419Q 0.17 tolerated(0.15) benign(0.175) TCGA-06-5416-01 7 151818656 151818656 C T GALNT11 Missense_Mutation p.S574L 0.16 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 7 151841865 151841865 G T KMT2C Nonsense_Mutation p.S4759* 0.47 TCGA-06-5416-01 7 151860278 151860278 A C KMT2C Missense_Mutation p.F3462V 0.22 probably_damaging(0.96) TCGA-06-5416-01 7 151871288 151871288 A G KMT2C Missense_Mutation p.M3101T 0.16 probably_damaging(0.992) TCGA-06-5416-01 7 151874389 151874389 G T KMT2C Missense_Mutation p.L2717I 0.18 probably_damaging(0.997) TCGA-06-5416-01 7 151878262 151878262 C A KMT2C Missense_Mutation p.R2228M 0.21 possibly_damaging(0.491) TCGA-06-5416-01 7 151879059 151879059 G T KMT2C Silent p.P1962P 0.20 TCGA-06-5416-01 7 151880210 151880210 C T KMT2C Missense_Mutation p.R1705H 0.20 probably_damaging(0.999) TCGA-06-5416-01 7 152012410 152012410 C T KMT2C Missense_Mutation p.A135T 0.20 probably_damaging(0.999) TCGA-06-5416-01 7 15427156 15427156 A C AGMO Missense_Mutation p.L278V 0.42 deleterious(0.03) benign(0.271) TCGA-06-5416-01 7 154667727 154667727 C T DPP6 Silent p.S665S 0.24 TCGA-06-5416-01 7 154684121 154684121 C T DPP6 Silent p.F843F 0.24 TCGA-06-5416-01 7 154735807 154735807 G T PAXIP1-AS2 Missense_Mutation p.D87Y 0.12 benign(0.068) TCGA-06-5416-01 7 154747269 154747269 G A PAXIP1 Silent p.F874F 0.50 TCGA-06-5416-01 7 154863339 154863339 G A HTR5A Missense_Mutation p.E244K 0.34 tolerated(0.41) benign(0.206) TCGA-06-5416-01 7 155094103 155094103 T G INSIG1 Missense_Mutation p.F227C 0.43 deleterious(0) probably_damaging(0.926) TCGA-06-5416-01 7 155530335 155530335 C T RBM33 Nonsense_Mutation p.R458* 0.17 TCGA-06-5416-01 7 155534512 155534512 G T RBM33 Splice_Site p.X684_splice 0.16 TCGA-06-5416-01 7 155559274 155559274 G A RBM33 Silent p.V1100V 0.23 TCGA-06-5416-01 7 155604783 155604783 G T SHH Missense_Mutation p.L12I 0.41 tolerated(0.13) unknown(0) TCGA-06-5416-01 7 156555857 156555857 G A LMBR1 Silent p.F188F 0.53 TCGA-06-5416-01 7 15666400 15666400 C T MEOX2 Missense_Mutation p.A221T 0.20 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 7 156743316 156743316 G A NOM1 Silent p.K295K 0.15 TCGA-06-5416-01 7 156759692 156759692 A G NOM1 Missense_Mutation p.D735G 0.36 deleterious(0.03) benign(0.143) TCGA-06-5416-01 7 156803126 156803126 G C MNX1 5'UTR 0.32 TCGA-06-5416-01 7 156974224 156974224 C A UBE3C Missense_Mutation p.S210Y 0.15 tolerated(0.62) benign(0.007) TCGA-06-5416-01 7 157023791 157023791 C T UBE3C Missense_Mutation p.R751W 0.41 deleterious(0) possibly_damaging(0.582) TCGA-06-5416-01 7 157151331 157151331 C T DNAJB6 Missense_Mutation p.A22V 0.14 deleterious(0.01) probably_damaging(0.985) TCGA-06-5416-01 7 157926662 157926662 G A PTPRN2 Silent p.L421L 0.25 TCGA-06-5416-01 7 157926699 157926699 C T PTPRN2 Missense_Mutation p.R409Q 0.19 tolerated(0.87) benign(0.001) TCGA-06-5416-01 7 158449017 158449017 C T NCAPG2 Missense_Mutation p.E775K 0.19 tolerated(0.08) benign(0.183) TCGA-06-5416-01 7 158468287 158468287 A G NCAPG2 Missense_Mutation p.I403T 0.08 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 7 158482561 158482561 C A NCAPG2 Missense_Mutation p.D208Y 0.30 deleterious(0) probably_damaging(0.94) TCGA-06-5416-01 7 158534504 158534504 C T ESYT2 Silent p.G653G 0.42 TCGA-06-5416-01 7 158590716 158590716 G A ESYT2 Nonsense_Mutation p.R190* 0.24 TCGA-06-5416-01 7 158704245 158704245 C T WDR60 Nonsense_Mutation p.R489* 0.35 TCGA-06-5416-01 7 158715070 158715070 C T WDR60 Nonsense_Mutation p.R642* 0.37 TCGA-06-5416-01 7 158935186 158935186 C A VIPR2 Nonsense_Mutation p.E35* 0.18 TCGA-06-5416-01 7 1589771 1589771 G A TMEM184A Silent p.R180R 0.31 TCGA-06-5416-01 7 1607157 1607157 G T PSMG3 3'UTR 0.71 TCGA-06-5416-01 7 16131311 16131311 T G ISPD 3'UTR 0.56 TCGA-06-5416-01 7 16502448 16502448 C A SOSTDC1 Nonsense_Mutation p.G116* 0.20 TCGA-06-5416-01 7 16736663 16736663 G T BZW2 Nonsense_Mutation p.E316* 0.18 TCGA-06-5416-01 7 17349630 17349630 G A AHR Missense_Mutation p.E46K 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 7 17378768 17378768 C A AHR Missense_Mutation p.S440Y 0.26 deleterious(0.04) benign(0.211) TCGA-06-5416-01 7 17379426 17379426 C T AHR Silent p.F659F 0.45 TCGA-06-5416-01 7 17379758 17379758 C A AHR Nonsense_Mutation p.S770* 0.22 TCGA-06-5416-01 7 17833739 17833739 C T SNX13 Missense_Mutation p.R935Q 0.19 tolerated(0.18) benign(0.027) TCGA-06-5416-01 7 17833766 17833766 C T SNX13 Missense_Mutation p.R926H 0.20 tolerated(0.57) benign(0.002) TCGA-06-5416-01 7 18624989 18624989 G T HDAC9 Silent p.V36V 0.44 TCGA-06-5416-01 7 18801780 18801780 C T HDAC9 Nonsense_Mutation p.R682* 0.19 TCGA-06-5416-01 7 18832978 18832978 A G HDAC9 Missense_Mutation p.D742G 0.20 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 7 18833011 18833011 C T HDAC9 Missense_Mutation p.A753V 0.35 deleterious(0) possibly_damaging(0.887) TCGA-06-5416-01 7 19035722 19035722 C T HDAC9 3'Flank 0.52 TCGA-06-5416-01 7 19184984 19184984 A G FERD3L Translation_Start_Site p.M1? 0.46 deleterious_low_confidence(0) possibly_damaging(0.643) TCGA-06-5416-01 7 20199505 20199505 G T MACC1 Missense_Mutation p.S160Y 0.17 tolerated(1) possibly_damaging(0.646) TCGA-06-5416-01 7 20721180 20721180 G A ABCB5 Missense_Mutation p.R587Q 0.25 tolerated(0.11) benign(0.16) TCGA-06-5416-01 7 20793013 20793013 G T ABCB5 Missense_Mutation p.A1154S 0.18 tolerated(0.38) benign(0.138) TCGA-06-5416-01 7 20795190 20795190 G A ABCB5 Silent p.E1239E 0.44 TCGA-06-5416-01 7 20824302 20824302 G A SP8 Silent p.I378I 0.30 TCGA-06-5416-01 7 21470109 21470109 G A SP4 Silent p.Q442Q 0.46 TCGA-06-5416-01 7 21600773 21600773 C A DNAH11 Missense_Mutation p.L323M 0.39 benign(0.016) TCGA-06-5416-01 7 21628905 21628905 C T DNAH11 Missense_Mutation p.R685C 0.44 benign(0.002) TCGA-06-5416-01 7 21628960 21628960 A C DNAH11 Missense_Mutation p.N703T 0.42 possibly_damaging(0.637) TCGA-06-5416-01 7 21640631 21640631 G A DNAH11 Missense_Mutation p.D1087N 0.27 benign(0.028) TCGA-06-5416-01 7 21747367 21747367 T G DNAH11 Silent p.V2206V 0.34 TCGA-06-5416-01 7 21779198 21779198 A G DNAH11 Silent p.R2614R 0.43 TCGA-06-5416-01 7 21813563 21813563 G T DNAH11 Missense_Mutation p.E3101D 0.40 benign(0.038) TCGA-06-5416-01 7 21892136 21892136 G T DNAH11 Nonsense_Mutation p.E3657* 0.24 TCGA-06-5416-01 7 21906193 21906193 T A DNAH11 Missense_Mutation p.L3875I 0.23 possibly_damaging(0.782) TCGA-06-5416-01 7 21923933 21923933 C A DNAH11 Missense_Mutation p.L4145I 0.46 probably_damaging(0.963) TCGA-06-5416-01 7 22186558 22186558 T C RAPGEF5 Missense_Mutation p.E502G 0.19 tolerated(0.07) probably_damaging(0.999) TCGA-06-5416-01 7 2260615 2260615 C T MAD1L1 Intron 0.49 TCGA-06-5416-01 7 22769330 22769330 A C IL6 Intron 0.11 TCGA-06-5416-01 7 2289597 2289597 C T NUDT1 Silent p.F109F 0.24 TCGA-06-5416-01 7 2290768 2290768 C T NUDT1 3'UTR 0.33 TCGA-06-5416-01 7 22985725 22985725 C T FAM126A Missense_Mutation p.G350E 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 23004090 23004090 C T FAM126A Silent p.R229R 0.42 TCGA-06-5416-01 7 23226762 23226762 T C NUPL2 Missense_Mutation p.S148P 0.18 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 7 23385617 23385617 C A IGF2BP3 Nonsense_Mutation p.E295* 0.25 TCGA-06-5416-01 7 23458439 23458439 G A IGF2BP3 Missense_Mutation p.R81W 0.21 tolerated(0.06) benign(0.119) TCGA-06-5416-01 7 23545404 23545404 G A TRA2A Nonsense_Mutation p.R267* 0.22 TCGA-06-5416-01 7 23561344 23561344 C T TRA2A Missense_Mutation p.R51Q 0.13 tolerated_low_confidence(0.08) benign(0.238) TCGA-06-5416-01 7 23741717 23741717 G T FAM221A Missense_Mutation p.M277I 0.22 tolerated(0.47) benign(0) TCGA-06-5416-01 7 23827610 23827610 G T STK31 Missense_Mutation p.K833N 0.23 tolerated(0.05) probably_damaging(0.919) TCGA-06-5416-01 7 23871959 23871959 A C STK31 Missense_Mutation p.N1012H 0.40 deleterious_low_confidence(0.01) benign(0.234) TCGA-06-5416-01 7 2406669 2406669 C A EIF3B Silent p.I464I 0.38 TCGA-06-5416-01 7 24331317 24331317 G T NPY 3'UTR 0.16 TCGA-06-5416-01 7 24331428 24331428 C T NPY 3'Flank 0.27 TCGA-06-5416-01 7 24690170 24690170 G T MPP6 Missense_Mutation p.D164Y 0.12 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 7 2473561 2473561 G A CHST12 3'UTR 0.33 TCGA-06-5416-01 7 24874237 24874237 C A OSBPL3 Missense_Mutation p.K538N 0.19 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 24892213 24892213 C T OSBPL3 Silent p.A356A 0.45 TCGA-06-5416-01 7 24903138 24903138 C T OSBPL3 Missense_Mutation p.A252T 0.18 deleterious(0.02) probably_damaging(0.988) TCGA-06-5416-01 7 24911613 24911613 A C OSBPL3 Missense_Mutation p.L58V 0.21 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 7 25176355 25176355 G A C7orf31 Nonsense_Mutation p.R337* 0.16 TCGA-06-5416-01 7 2580637 2580637 G A BRAT1 Silent p.L457L 0.39 TCGA-06-5416-01 7 26225308 26225308 C T NFE2L3 Missense_Mutation p.L664F 0.20 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 7 26236230 26236230 G A HNRNPA2B1 Missense_Mutation p.A187V 0.20 tolerated(0.06) unknown(0) TCGA-06-5416-01 7 26248117 26248117 G T CBX3 Missense_Mutation p.R91I 0.08 deleterious(0.04) benign(0.08) TCGA-06-5416-01 7 26248160 26248160 G T CBX3 Missense_Mutation p.K105N 0.16 deleterious(0.01) benign(0.08) TCGA-06-5416-01 7 2645531 2645531 C T IQCE Missense_Mutation p.P589S 0.61 tolerated(1) benign(0.041) TCGA-06-5416-01 7 26903991 26903991 G A SKAP2 Silent p.L20L 0.18 TCGA-06-5416-01 7 27194702 27194702 C A HOXA7 Missense_Mutation p.Q173H 0.29 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 27203171 27203171 C A HOXA9 3'UTR 0.20 TCGA-06-5416-01 7 27211710 27211710 C A HOXA10 Missense_Mutation p.Q347H 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 27237910 27237910 C T HOXA13 Silent p.T358T 0.22 TCGA-06-5416-01 7 27671971 27671971 C A HIBADH Missense_Mutation p.A116S 0.44 tolerated(0.72) benign(0.001) TCGA-06-5416-01 7 2771258 2771258 G A GNA12 Missense_Mutation p.R235C 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 27831743 27831743 G A TAX1BP1 Missense_Mutation p.R386K 0.40 tolerated(1) benign(0.001) TCGA-06-5416-01 7 27872544 27872544 G A JAZF1 Missense_Mutation p.R203C 0.39 deleterious(0) possibly_damaging(0.855) TCGA-06-5416-01 7 28452514 28452514 C T CREB5 5'UTR 0.46 TCGA-06-5416-01 7 28534599 28534599 A G CREB5 Missense_Mutation p.T51A 0.24 tolerated(0.08) benign(0.039) TCGA-06-5416-01 7 29234707 29234707 C T CPVL 5'UTR 0.44 TCGA-06-5416-01 7 29546854 29546854 G T CHN2 Missense_Mutation p.K334N 0.15 tolerated(0.33) possibly_damaging(0.685) TCGA-06-5416-01 7 29546940 29546940 T C CHN2 Missense_Mutation p.V363A 0.18 deleterious(0) possibly_damaging(0.454) TCGA-06-5416-01 7 2983909 2983909 G A CARD11 Silent p.R207R 0.21 TCGA-06-5416-01 7 2987290 2987290 G A CARD11 Missense_Mutation p.R47C 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 29915482 29915482 C A WIPF3 Missense_Mutation p.P43T 0.28 deleterious_low_confidence(0.03) possibly_damaging(0.908) TCGA-06-5416-01 7 29915553 29915553 C T WIPF3 Silent p.N66N 0.17 TCGA-06-5416-01 7 29963351 29963351 G C SCRN1 3'Flank 0.60 TCGA-06-5416-01 7 30062290 30062290 C A FKBP14 Nonsense_Mutation p.E114* 0.20 TCGA-06-5416-01 7 30085895 30085895 G T PLEKHA8 Missense_Mutation p.R76I 0.21 tolerated(0.36) benign(0.05) TCGA-06-5416-01 7 30325404 30325404 G A ZNRF2 Missense_Mutation p.G144D 0.23 tolerated(0.18) possibly_damaging(0.895) TCGA-06-5416-01 7 30491005 30491005 G A NOD1 Silent p.C676C 0.41 TCGA-06-5416-01 7 30491617 30491617 C T NOD1 Silent p.E472E 0.19 TCGA-06-5416-01 7 30492340 30492340 G T NOD1 Missense_Mutation p.F231L 0.07 tolerated(0.1) possibly_damaging(0.66) TCGA-06-5416-01 7 30494808 30494808 G A NOD1 Silent p.I107I 0.25 TCGA-06-5416-01 7 30496503 30496503 A G NOD1 Missense_Mutation p.I12T 0.41 tolerated(0.4) benign(0.002) TCGA-06-5416-01 7 30951611 30951611 C T AQP1 Silent p.I29I 0.48 TCGA-06-5416-01 7 31014104 31014104 C T GHRHR Missense_Mutation p.A271V 0.41 tolerated(0.08) benign(0.033) TCGA-06-5416-01 7 31015431 31015431 G A GHRHR Missense_Mutation p.V308M 0.35 tolerated(0.08) benign(0.045) TCGA-06-5416-01 7 31683096 31683096 C T CCDC129 Silent p.S730S 0.27 TCGA-06-5416-01 7 31877545 31877545 C T PDE1C Missense_Mutation p.D401N 0.20 deleterious(0) probably_damaging(0.936) TCGA-06-5416-01 7 32109929 32109929 T G PDE1C Intron 0.41 TCGA-06-5416-01 7 32612889 32612889 G A AVL9 Missense_Mutation p.A477T 0.23 deleterious(0.03) benign(0.377) TCGA-06-5416-01 7 32612973 32612973 A G AVL9 Missense_Mutation p.I505V 0.14 tolerated(0.16) benign(0.268) TCGA-06-5416-01 7 32772656 32772656 C T MIR550A2 RNA 0.15 TCGA-06-5416-01 7 32910272 32910272 A G KBTBD2 Missense_Mutation p.L186S 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 33035821 33035821 C T FKBP9 Silent p.I362I 0.21 TCGA-06-5416-01 7 33303921 33303921 G A BBS9 Missense_Mutation p.A213T 0.45 deleterious(0) possibly_damaging(0.657) TCGA-06-5416-01 7 33392474 33392474 G A BBS9 Missense_Mutation p.R514Q 0.38 tolerated(0.35) benign(0.141) TCGA-06-5416-01 7 33423287 33423287 G A BBS9 Missense_Mutation p.R600H 0.37 deleterious(0) possibly_damaging(0.9) TCGA-06-5416-01 7 33573715 33573715 C T BBS9 Silent p.C816C 0.47 TCGA-06-5416-01 7 33644829 33644829 C A BBS9 Silent p.V885V 0.42 TCGA-06-5416-01 7 33946463 33946463 T C BMPER Missense_Mutation p.V56A 0.49 tolerated(0.66) benign(0.001) TCGA-06-5416-01 7 34006109 34006109 A C BMPER Missense_Mutation p.N113T 0.06 tolerated(0.59) benign(0) TCGA-06-5416-01 7 34014365 34014365 A C BMPER Missense_Mutation p.E182A 0.40 tolerated(0.22) benign(0.03) TCGA-06-5416-01 7 34118740 34118740 C T BMPER Silent p.R450R 0.42 TCGA-06-5416-01 7 34979903 34979903 C T DPY19L1 Missense_Mutation p.A503T 0.29 tolerated(0.49) benign(0.021) TCGA-06-5416-01 7 34981489 34981489 T C DPY19L1 Missense_Mutation p.Y453C 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 35293158 35293158 G T TBX20 Nonsense_Mutation p.S25* 0.25 TCGA-06-5416-01 7 35674826 35674826 G A HERPUD2 Missense_Mutation p.A287V 0.54 tolerated(0.12) benign(0.426) TCGA-06-5416-01 7 36194575 36194575 C T EEPD1 Silent p.T214T 0.16 TCGA-06-5416-01 7 36438785 36438785 G A ANLN Silent p.S90S 0.49 TCGA-06-5416-01 7 36460237 36460237 G A ANLN Missense_Mutation p.E683K 0.20 deleterious(0.02) possibly_damaging(0.493) TCGA-06-5416-01 7 36465326 36465326 C T ANLN Nonsense_Mutation p.R909* 0.39 TCGA-06-5416-01 7 36492150 36492150 C A ANLN Missense_Mutation p.L1106I 0.14 tolerated(0.06) benign(0.136) TCGA-06-5416-01 7 37253021 37253021 C T ELMO1 Silent p.A291A 0.23 TCGA-06-5416-01 7 37264629 37264629 T G ELMO1 Missense_Mutation p.S186R 0.37 tolerated(0.27) benign(0.248) TCGA-06-5416-01 7 37780184 37780184 C T GPR141 Silent p.S63S 0.49 TCGA-06-5416-01 7 37780774 37780774 G T GPR141 Missense_Mutation p.S260I 0.42 tolerated(0.1) benign(0.051) TCGA-06-5416-01 7 37901739 37901739 G A NME8 Missense_Mutation p.R127Q 0.47 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 7 37951843 37951843 G T SFRP4 Silent p.I223I 0.16 TCGA-06-5416-01 7 37956115 37956115 G A SFRP4 Silent p.L9L 0.54 TCGA-06-5416-01 7 38247300 38247300 C T STARD3NL Silent p.F65F 0.39 TCGA-06-5416-01 7 38299698 38299698 C A TRGC1 Missense_Mutation p.E171D 0.13 deleterious(0) benign(0.236) TCGA-06-5416-01 7 38356660 38356660 C A TRGV9 Missense_Mutation p.E108D 0.23 tolerated(0.58) possibly_damaging(0.853) TCGA-06-5416-01 7 38388980 38388980 G T TRGV5 Silent p.V110V 0.40 TCGA-06-5416-01 7 38389009 38389009 G A TRGV5 Nonsense_Mutation p.R101* 0.22 TCGA-06-5416-01 7 38433672 38433672 G T AMPH Missense_Mutation p.T514N 0.06 tolerated(0.12) benign(0.003) TCGA-06-5416-01 7 38768176 38768176 G A VPS41 Silent p.I790I 0.45 TCGA-06-5416-01 7 39736327 39736327 C A RALA Missense_Mutation p.L123I 0.18 tolerated(0.52) benign(0.243) TCGA-06-5416-01 7 40027299 40027299 T G CDK13 Missense_Mutation p.I438S 0.42 tolerated(0.11) unknown(0) TCGA-06-5416-01 7 40900114 40900114 G A SUGCT 3'UTR 0.26 TCGA-06-5416-01 7 4107472 4107472 C T SDK1 Missense_Mutation p.P972S 0.16 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 7 4153706 4153706 C T SDK1 Missense_Mutation p.S1208F 0.34 deleterious(0.01) possibly_damaging(0.761) TCGA-06-5416-01 7 4153768 4153768 G A SDK1 Missense_Mutation p.V1229I 0.27 tolerated(1) benign(0.006) TCGA-06-5416-01 7 41729339 41729339 C T INHBA Missense_Mutation p.R397K 0.16 deleterious(0.04) probably_damaging(0.918) TCGA-06-5416-01 7 42007392 42007392 C T GLI3 Missense_Mutation p.D745N 0.17 deleterious(0.02) probably_damaging(0.932) TCGA-06-5416-01 7 42011933 42011933 T C GLI3 Intron 0.21 TCGA-06-5416-01 7 42065982 42065982 G A GLI3 Missense_Mutation p.A353V 0.38 tolerated(0.07) benign(0.331) TCGA-06-5416-01 7 42079764 42079764 C T GLI3 Missense_Mutation p.D301N 0.18 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 7 42949294 42949294 C A C7orf25 Missense_Mutation p.E460D 0.21 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 7 42958828 42958828 C A PSMA2 Intron 0.22 TCGA-06-5416-01 7 42959665 42959665 C A PSMA2 Intron 0.39 TCGA-06-5416-01 7 43503359 43503359 G A HECW1 Missense_Mutation p.G918R 0.41 tolerated(0.06) possibly_damaging(0.563) TCGA-06-5416-01 7 43591831 43591831 C T HECW1 Missense_Mutation p.S1469L 0.42 tolerated(0.19) benign(0.34) TCGA-06-5416-01 7 43594315 43594315 C T HECW1 Silent p.F1545F 0.20 TCGA-06-5416-01 7 43664409 43664409 C T STK17A Silent p.L405L 0.20 TCGA-06-5416-01 7 43843412 43843412 A G BLVRA Missense_Mutation p.K200E 0.23 deleterious(0.02) benign(0.063) TCGA-06-5416-01 7 43917072 43917072 C T URGCP Missense_Mutation p.D664N 0.23 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 7 44043458 44043458 C A SPDYE1 Missense_Mutation p.P165H 0.17 deleterious(0.03) probably_damaging(0.976) TCGA-06-5416-01 7 44047065 44047065 T C SPDYE1 Silent p.R277R 0.21 TCGA-06-5416-01 7 44112825 44112825 G T POLM 3'UTR 0.51 TCGA-06-5416-01 7 44148557 44148557 G A AEBP1 Missense_Mutation p.E334K 0.20 tolerated_low_confidence(0.08) benign(0.142) TCGA-06-5416-01 7 44185256 44185256 C T GCK Missense_Mutation p.D366N 0.45 tolerated(0.3) benign(0.181) TCGA-06-5416-01 7 44197700 44197700 C A GCK Intron 0.23 TCGA-06-5416-01 7 44431968 44431968 T C NUDCD3 Silent p.E301E 0.18 TCGA-06-5416-01 7 44612208 44612208 G T DDX56 Silent p.S173S 0.15 TCGA-06-5416-01 7 44619209 44619209 G A TMED4 Nonsense_Mutation p.R185* 0.22 TCGA-06-5416-01 7 44713427 44713427 C A OGDH Silent p.I225I 0.24 TCGA-06-5416-01 7 44747682 44747682 C T OGDH 3'UTR 0.25 TCGA-06-5416-01 7 44797628 44797628 G A ZMIZ2 Missense_Mutation p.R245H 0.17 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 7 45009666 45009666 G A MYO1G Silent p.Y435Y 0.55 TCGA-06-5416-01 7 45077935 45077935 G A CCM2 Silent p.E59E 0.26 TCGA-06-5416-01 7 45109494 45109494 G A CCM2 Missense_Mutation p.D248N 0.18 deleterious(0) possibly_damaging(0.871) TCGA-06-5416-01 7 45222786 45222786 G T RAMP3 Missense_Mutation p.E74D 0.19 deleterious(0.02) probably_damaging(0.995) TCGA-06-5416-01 7 45222997 45222997 G A RAMP3 Missense_Mutation p.D145N 0.23 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 7 45748058 45748058 G A ADCY1 Missense_Mutation p.R976Q 0.15 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 7 47408157 47408157 C T TNS3 Missense_Mutation p.D696N 0.23 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 7 47454692 47454692 C A TNS3 Missense_Mutation p.V196L 0.41 tolerated(0.15) benign(0.314) TCGA-06-5416-01 7 47454755 47454755 C T TNS3 Missense_Mutation p.A175T 0.09 tolerated(0.8) benign(0.042) TCGA-06-5416-01 7 47467973 47467973 C T TNS3 Missense_Mutation p.G109D 0.36 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 47906181 47906181 G T PKD1L1 Missense_Mutation p.L1310I 0.18 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 7 4794990 4794990 C T FOXK1 Silent p.Y342Y 0.16 TCGA-06-5416-01 7 4794998 4794998 C T FOXK1 Missense_Mutation p.A345V 0.33 tolerated(0.06) possibly_damaging(0.467) TCGA-06-5416-01 7 47955111 47955111 G T PKD1L1 Nonsense_Mutation p.Y382* 0.15 TCGA-06-5416-01 7 47979910 47979910 G T PKD1L1 Silent p.V55V 0.17 TCGA-06-5416-01 7 48004956 48004956 G T HUS1 Silent p.S280S 0.17 TCGA-06-5416-01 7 48035633 48035633 G T SUN3 Missense_Mutation p.L230I 0.16 tolerated(0.31) probably_damaging(0.964) TCGA-06-5416-01 7 48046893 48046893 G A SUN3 Missense_Mutation p.R121C 0.21 deleterious(0) probably_damaging(0.939) TCGA-06-5416-01 7 48068464 48068464 G A SUN3 Silent p.S24S 0.45 TCGA-06-5416-01 7 48068610 48068610 A G SUN3 5'UTR 0.07 TCGA-06-5416-01 7 48086157 48086157 G A C7orf57 Missense_Mutation p.D151N 0.50 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 48146998 48146998 G T UPP1 Missense_Mutation p.E229D 0.31 tolerated(0.05) benign(0.003) TCGA-06-5416-01 7 4820836 4820836 C A AP5Z1 Missense_Mutation p.F24L 0.47 tolerated(0.07) benign(0.386) TCGA-06-5416-01 7 48317839 48317839 G T ABCA13 Nonsense_Mutation p.E2350* 0.12 TCGA-06-5416-01 7 48520753 48520753 T C ABCA13 Splice_Site p.X4365_splice 0.24 TCGA-06-5416-01 7 4856970 4856970 G A RADIL Missense_Mutation p.S543L 0.46 tolerated(0.1) probably_damaging(0.994) TCGA-06-5416-01 7 48634368 48634368 G A ABCA13 Silent p.K4901K 0.19 TCGA-06-5416-01 7 4899930 4899930 C A PAPOLB Missense_Mutation p.Q503H 0.48 tolerated(0.1) benign(0.02) TCGA-06-5416-01 7 50129272 50129272 C T ZPBP Missense_Mutation p.R54H 0.21 tolerated(0.27) benign(0.004) TCGA-06-5416-01 7 50455075 50455075 C T IKZF1 Intron 0.25 TCGA-06-5416-01 7 50663171 50663171 C T GRB10 Missense_Mutation p.C534Y 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-06-5416-01 7 5104122 5104122 C T RBAK Silent p.Y345Y 0.17 TCGA-06-5416-01 7 5104513 5104513 C T RBAK Missense_Mutation p.R476W 0.18 deleterious(0.01) benign(0.027) TCGA-06-5416-01 7 5104860 5104860 C T RBAK Silent p.G591G 0.19 TCGA-06-5416-01 7 51085109 51085109 C T COBL 3'UTR 0.16 TCGA-06-5416-01 7 51095585 51095585 G A COBL Missense_Mutation p.P1070S 0.16 tolerated(0.08) benign(0.327) TCGA-06-5416-01 7 51096236 51096236 C A COBL Nonsense_Mutation p.E853* 0.43 TCGA-06-5416-01 7 51258648 51258648 A G COBL Missense_Mutation p.V195A 0.38 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 5167350 5167350 C T ZNF890P RNA 0.50 TCGA-06-5416-01 7 5232786 5232786 C A WIPI2 Missense_Mutation p.R38S 0.35 tolerated_low_confidence(0.16) benign(0) TCGA-06-5416-01 7 53103788 53103788 G A POM121L12 Missense_Mutation p.A142T 0.22 tolerated(0.24) probably_damaging(0.913) TCGA-06-5416-01 7 5340232 5340232 C T SLC29A4 Silent p.F463F 0.51 TCGA-06-5416-01 7 540862 540862 G A PDGFA Silent p.Y157Y 0.43 TCGA-06-5416-01 7 55238734 55238734 C A EGFR Intron 0.47 TCGA-06-5416-01 7 55240779 55240779 C T EGFR Missense_Mutation p.R675W 0.45 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 7 55240786 55240786 G A EGFR Missense_Mutation p.R677H 0.40 tolerated(0.11) probably_damaging(0.999) TCGA-06-5416-01 7 55242489 55242489 G A EGFR Silent p.P753P 0.21 TCGA-06-5416-01 7 55248952 55248952 G A EGFR Intron 0.26 TCGA-06-5416-01 7 55270250 55270250 G A EGFR Missense_Mutation p.R1068Q 0.19 deleterious(0.03) benign(0.382) TCGA-06-5416-01 7 55466248 55466248 C A LANCL2 Missense_Mutation p.A152D 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 55492992 55492992 G A LANCL2 Missense_Mutation p.D352N 0.26 deleterious(0) possibly_damaging(0.907) TCGA-06-5416-01 7 55863770 55863770 C T SEPT14 Missense_Mutation p.E379K 0.27 tolerated(0.06) benign(0.273) TCGA-06-5416-01 7 55873035 55873035 A G SEPT14 Silent p.C345C 0.30 TCGA-06-5416-01 7 55991307 55991307 G A MRPS17 Silent p.Q61Q 0.59 TCGA-06-5416-01 7 56007796 56007796 G T ZNF713 3'UTR 0.31 TCGA-06-5416-01 7 56020892 56020892 T C MRPS17 Missense_Mutation p.S2P 0.48 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 7 56082717 56082717 G A PSPH Missense_Mutation p.A190V 0.21 deleterious(0.02) possibly_damaging(0.593) TCGA-06-5416-01 7 5680885 5680885 C T RNF216 Missense_Mutation p.R761Q 0.27 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 7 57187652 57187652 C A ZNF479 Missense_Mutation p.E490D 0.20 deleterious(0.05) benign(0.001) TCGA-06-5416-01 7 57187660 57187660 T C ZNF479 Missense_Mutation p.T488A 0.13 tolerated(0.08) benign(0.081) TCGA-06-5416-01 7 5781089 5781089 G T RNF216 Missense_Mutation p.L187I 0.22 tolerated_low_confidence(0.4) possibly_damaging(0.452) TCGA-06-5416-01 7 5967994 5967994 C T RSPH10B Silent p.E755E 0.09 TCGA-06-5416-01 7 5982988 5982988 C T RSPH10B Silent p.T575T 0.10 TCGA-06-5416-01 7 5998658 5998658 C T RSPH10B Missense_Mutation p.V209I 0.23 tolerated(0.05) benign(0.192) TCGA-06-5416-01 7 6062789 6062789 G T EIF2AK1 3'UTR 0.31 TCGA-06-5416-01 7 6063079 6063079 G A AIMP2 Silent p.A240A 0.23 TCGA-06-5416-01 7 6063151 6063151 G A AIMP2 Silent p.G264G 0.22 TCGA-06-5416-01 7 6213306 6213306 G T CYTH3 Missense_Mutation p.L143I 0.45 deleterious(0.02) probably_damaging(0.96) TCGA-06-5416-01 7 6217518 6217518 C T CYTH3 Missense_Mutation p.A102T 0.48 deleterious(0.03) benign(0.236) TCGA-06-5416-01 7 635853 635853 G A PRKAR1B Missense_Mutation p.A213V 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 7 63809120 63809120 C A ZNF736 Silent p.A293A 0.55 TCGA-06-5416-01 7 63982023 63982023 T G ZNF680 Missense_Mutation p.K370T 0.50 tolerated(0.23) benign(0.017) TCGA-06-5416-01 7 63982778 63982778 C T ZNF680 Silent p.E118E 0.37 TCGA-06-5416-01 7 64167949 64167949 C T ZNF107 Nonsense_Mutation p.R423* 0.16 TCGA-06-5416-01 7 64168118 64168118 G A ZNF107 Missense_Mutation p.R479Q 0.53 tolerated(1) benign(0.008) TCGA-06-5416-01 7 64169561 64169561 G T ZNF107 3'UTR 0.50 TCGA-06-5416-01 7 64292390 64292390 G A ZNF138 Missense_Mutation p.G231D 0.22 deleterious(0.03) possibly_damaging(0.697) TCGA-06-5416-01 7 64292901 64292901 C A ZNF138 3'Flank 0.29 TCGA-06-5416-01 7 64388444 64388444 C A ZNF273 Missense_Mutation p.F246L 0.38 tolerated(0.54) benign(0.004) TCGA-06-5416-01 7 6442014 6442014 G A RAC1 Silent p.A191A 0.48 TCGA-06-5416-01 7 64438772 64438772 C A ZNF117 Nonsense_Mutation p.E393* 0.15 TCGA-06-5416-01 7 64439032 64439032 T G ZNF117 Missense_Mutation p.K306T 0.45 tolerated(0.08) probably_damaging(0.986) TCGA-06-5416-01 7 64439211 64439211 C A ZNF117 Missense_Mutation p.E246D 0.24 deleterious(0.04) benign(0.018) TCGA-06-5416-01 7 64439521 64439521 C T ZNF117 Missense_Mutation p.G143E 0.37 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 7 64439759 64439759 C A ZNF117 Nonsense_Mutation p.G64* 0.21 TCGA-06-5416-01 7 6452622 6452622 C T DAGLB Missense_Mutation p.V491I 0.37 tolerated(0.37) benign(0.062) TCGA-06-5416-01 7 64528949 64528949 C A SNORA22 3'Flank 0.18 TCGA-06-5416-01 7 64646860 64646860 G A INTS4L1 RNA 0.11 TCGA-06-5416-01 7 6502531 6502531 G T KDELR2 3'UTR 0.19 TCGA-06-5416-01 7 6509244 6509244 C T KDELR2 Missense_Mutation p.D112N 0.20 tolerated(0.23) benign(0.005) TCGA-06-5416-01 7 65157795 65157795 G A INTS4L2 RNA 0.23 TCGA-06-5416-01 7 65171335 65171335 C T INTS4L2 RNA 0.31 TCGA-06-5416-01 7 65617316 65617316 T G CRCP Missense_Mutation p.V140G 0.34 tolerated_low_confidence(0.35) benign(0.001) TCGA-06-5416-01 7 66103855 66103855 G A KCTD7 Missense_Mutation p.R169Q 0.25 tolerated(0.32) benign(0.054) TCGA-06-5416-01 7 66456124 66456124 G A SBDS Silent p.I208I 0.44 TCGA-06-5416-01 7 66482915 66482915 G A TYW1 Missense_Mutation p.D216N 0.18 tolerated(1) benign(0.002) TCGA-06-5416-01 7 66563602 66563602 G T TYW1 Nonsense_Mutation p.E487* 0.39 TCGA-06-5416-01 7 66648173 66648173 G A TYW1 Missense_Mutation p.A587T 0.41 deleterious(0.03) possibly_damaging(0.864) TCGA-06-5416-01 7 66764377 66764377 G A Y_RNA 5'Flank 0.19 TCGA-06-5416-01 7 6730792 6730792 C T ZNF12 Missense_Mutation p.R594Q 0.45 tolerated(0.65) probably_damaging(0.975) TCGA-06-5416-01 7 6776824 6776824 G A PMS2CL RNA 0.51 TCGA-06-5416-01 7 70254895 70254895 C T AUTS2 Missense_Mutation p.S898L 0.51 tolerated(0.16) benign(0.001) TCGA-06-5416-01 7 70254987 70254987 G A AUTS2 Missense_Mutation p.A929T 0.20 tolerated(0.22) benign(0.014) TCGA-06-5416-01 7 70255237 70255237 C T AUTS2 Missense_Mutation p.S1012F 0.15 tolerated(0.12) possibly_damaging(0.61) TCGA-06-5416-01 7 71130574 71130574 C T WBSCR17 Missense_Mutation p.P420L 0.28 deleterious(0.01) benign(0.285) TCGA-06-5416-01 7 71134974 71134974 C T WBSCR17 Silent p.I428I 0.26 TCGA-06-5416-01 7 71743707 71743707 C T CALN1 Missense_Mutation p.E70K 0.46 tolerated(0.23) benign(0.009) TCGA-06-5416-01 7 720322 720322 T C PRKAR1B Silent p.S73S 0.16 TCGA-06-5416-01 7 720345 720345 A C PRKAR1B Missense_Mutation p.L66V 0.20 tolerated(0.3) benign(0.008) TCGA-06-5416-01 7 72413673 72413673 C T POM121 Silent p.F782F 0.12 TCGA-06-5416-01 7 72658706 72658706 C T GTF2IRD2P1 RNA 0.15 TCGA-06-5416-01 7 72718244 72718244 G A NSUN5 Missense_Mutation p.P306L 0.39 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 72727235 72727235 G A TRIM50 Silent p.H382H 0.50 TCGA-06-5416-01 7 72733015 72733015 C T TRIM50 Missense_Mutation p.E178K 0.12 tolerated(0.07) probably_damaging(0.999) TCGA-06-5416-01 7 7283483 7283483 C T C1GALT1 3'UTR 0.30 TCGA-06-5416-01 7 72849450 72849450 C T FZD9 Silent p.I371I 0.39 TCGA-06-5416-01 7 72849845 72849845 C T FZD9 Missense_Mutation p.S503L 0.19 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 7 72873887 72873887 C A BAZ1B Missense_Mutation p.K1137N 0.48 deleterious(0.02) possibly_damaging(0.876) TCGA-06-5416-01 7 72891740 72891740 G A BAZ1B Missense_Mutation p.T684I 0.44 deleterious(0) possibly_damaging(0.904) TCGA-06-5416-01 7 72892073 72892073 C T BAZ1B Missense_Mutation p.R573K 0.21 tolerated(0.92) benign(0.001) TCGA-06-5416-01 7 73008277 73008277 G A MLXIPL Missense_Mutation p.T826I 0.16 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 73010001 73010001 C T MLXIPL Missense_Mutation p.R759Q 0.53 tolerated(0.15) benign(0.355) TCGA-06-5416-01 7 73107984 73107984 G A WBSCR22 Silent p.S209S 0.42 TCGA-06-5416-01 7 73245568 73245568 C T CLDN4 Silent p.L13L 0.23 TCGA-06-5416-01 7 73279638 73279638 C T WBSCR28 Silent p.L130L 0.38 TCGA-06-5416-01 7 73470743 73470743 T C ELN Silent p.G431G 0.17 TCGA-06-5416-01 7 73511042 73511042 C T LIMK1 Silent p.G81G 0.39 TCGA-06-5416-01 7 73521402 73521402 G A LIMK1 Missense_Mutation p.R315H 0.45 tolerated(0.13) benign(0.012) TCGA-06-5416-01 7 73530158 73530158 C T LIMK1 Silent p.F479F 0.39 TCGA-06-5416-01 7 73634294 73634294 C T LAT2 Silent p.V61V 0.44 TCGA-06-5416-01 7 73932493 73932493 T C GTF2IRD1 Missense_Mutation p.V181A 0.44 deleterious(0.02) benign(0.386) TCGA-06-5416-01 7 7410407 7410407 C A COL28A1 Silent p.G1005G 0.44 TCGA-06-5416-01 7 74197359 74197359 C A NCF1 Missense_Mutation p.L177M 0.16 deleterious(0.05) benign(0.212) TCGA-06-5416-01 7 74197945 74197945 G A NCF1 Missense_Mutation p.E218K 0.39 deleterious(0.01) probably_damaging(0.962) TCGA-06-5416-01 7 74211656 74211656 G T GTF2IRD2 Missense_Mutation p.S732Y 0.52 deleterious(0.03) benign(0.157) TCGA-06-5416-01 7 74212547 74212547 G A GTF2IRD2 Missense_Mutation p.A435V 0.31 tolerated(0.11) possibly_damaging(0.584) TCGA-06-5416-01 7 74565081 74565081 C T GTF2IRD2B Missense_Mutation p.S943F 0.23 deleterious(0) possibly_damaging(0.627) TCGA-06-5416-01 7 7472286 7472286 C T COL28A1 Missense_Mutation p.G636S 0.15 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 7 75066890 75066890 G A POM121C Missense_Mutation p.S128F 0.24 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 7 75070805 75070805 C T POM121C 5'UTR 0.25 TCGA-06-5416-01 7 75186992 75186992 G A HIP1 Missense_Mutation p.S516L 0.23 deleterious(0.04) benign(0.011) TCGA-06-5416-01 7 75203144 75203144 C T HIP1 Missense_Mutation p.A223T 0.44 tolerated(0.05) probably_damaging(0.975) TCGA-06-5416-01 7 75517670 75517670 G T RHBDD2 3'UTR 0.43 TCGA-06-5416-01 7 75573233 75573233 C A POR Intron 0.48 TCGA-06-5416-01 7 75686789 75686789 G A MDH2 Silent p.P99P 0.45 TCGA-06-5416-01 7 7571455 7571455 C A COL28A1 Missense_Mutation p.D69Y 0.12 deleterious(0.01) possibly_damaging(0.903) TCGA-06-5416-01 7 7612821 7612821 C T MIOS Missense_Mutation p.R239C 0.16 deleterious(0.01) probably_damaging(0.975) TCGA-06-5416-01 7 7625278 7625278 C T MIOS Missense_Mutation p.L554F 0.39 deleterious(0.03) possibly_damaging(0.828) TCGA-06-5416-01 7 76631548 76631548 A G UPK3B Intron 0.22 TCGA-06-5416-01 7 76826027 76826027 C T FGL2 Missense_Mutation p.E297K 0.16 deleterious(0.01) benign(0.201) TCGA-06-5416-01 7 76826045 76826045 G T FGL2 Missense_Mutation p.L291I 0.17 deleterious(0.01) probably_damaging(0.985) TCGA-06-5416-01 7 76903036 76903036 C A CCDC146 Missense_Mutation p.S400Y 0.43 deleterious(0.01) possibly_damaging(0.605) TCGA-06-5416-01 7 769299 769299 G A HEATR2 Splice_Site p.X199_splice 0.48 TCGA-06-5416-01 7 77200446 77200446 G A PTPN12 Missense_Mutation p.A51T 0.15 tolerated(0.68) benign(0.006) TCGA-06-5416-01 7 77365825 77365825 G T RSBN1L Missense_Mutation p.V229L 0.18 deleterious(0.02) benign(0.21) TCGA-06-5416-01 7 77569557 77569557 C T PHTF2 Missense_Mutation p.R526C 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 77764476 77764476 G A MAGI2 Missense_Mutation p.R965C 0.41 deleterious(0) probably_damaging(0.962) TCGA-06-5416-01 7 78636499 78636499 G A MAGI2 Missense_Mutation p.R109C 0.17 deleterious(0) possibly_damaging(0.902) TCGA-06-5416-01 7 80285868 80285868 G A CD36 Missense_Mutation p.E45K 0.44 tolerated(0.14) possibly_damaging(0.54) TCGA-06-5416-01 7 803563 803563 G A HEATR2 Missense_Mutation p.A579T 0.36 tolerated(0.59) benign(0.004) TCGA-06-5416-01 7 81359011 81359011 A G HGF Missense_Mutation p.V317A 0.20 tolerated(0.08) benign(0.004) TCGA-06-5416-01 7 81372780 81372780 C T HGF Missense_Mutation p.D252N 0.37 tolerated(0.12) benign(0.014) TCGA-06-5416-01 7 81386505 81386505 C A HGF Missense_Mutation p.S161I 0.40 tolerated(0.1) probably_damaging(0.953) TCGA-06-5416-01 7 81593536 81593536 C T CACNA2D1 Missense_Mutation p.R905H 0.47 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 7 81598239 81598239 C A CACNA2D1 Nonsense_Mutation p.E787* 0.38 TCGA-06-5416-01 7 81689805 81689805 C T CACNA2D1 Missense_Mutation p.R273Q 0.40 tolerated(0.09) benign(0.345) TCGA-06-5416-01 7 82579967 82579967 G A PCLO Missense_Mutation p.R3313W 0.44 unknown(0) TCGA-06-5416-01 7 82582306 82582306 C A PCLO Missense_Mutation p.A2655S 0.08 unknown(0) TCGA-06-5416-01 7 82582738 82582738 C T PCLO Missense_Mutation p.A2511T 0.43 unknown(0) TCGA-06-5416-01 7 82583913 82583913 G A PCLO Missense_Mutation p.S2119L 0.42 unknown(0) TCGA-06-5416-01 7 84628864 84628864 C T SEMA3D Silent p.Q742Q 0.42 TCGA-06-5416-01 7 84685170 84685170 T G SEMA3D Missense_Mutation p.K242Q 0.06 deleterious(0.05) benign(0.08) TCGA-06-5416-01 7 84697541 84697541 G A SEMA3D Silent p.F185F 0.20 TCGA-06-5416-01 7 86415921 86415921 C T GRM3 Silent p.V271V 0.28 TCGA-06-5416-01 7 86547816 86547816 C A KIAA1324L Missense_Mutation p.R512I 0.41 deleterious(0.04) probably_damaging(0.914) TCGA-06-5416-01 7 86803985 86803985 G T DMTF1 Missense_Mutation p.K173N 0.34 tolerated(0.06) benign(0.41) TCGA-06-5416-01 7 86823105 86823105 T G DMTF1 Missense_Mutation p.I572S 0.43 deleterious(0) possibly_damaging(0.703) TCGA-06-5416-01 7 87035783 87035783 G A ABCB4 Missense_Mutation p.L1110F 0.26 tolerated(0.07) possibly_damaging(0.624) TCGA-06-5416-01 7 87037515 87037515 G A ABCB4 Silent p.V1039V 0.19 TCGA-06-5416-01 7 87079310 87079310 G A ABCB4 Silent p.F269F 0.52 TCGA-06-5416-01 7 87150193 87150193 C A ABCB1 Splice_Site p.X896_splice 0.45 TCGA-06-5416-01 7 87473083 87473083 C T SLC25A40 Missense_Mutation p.A243T 0.13 deleterious(0) possibly_damaging(0.822) TCGA-06-5416-01 7 87537442 87537442 C T DBF4 Silent p.F663F 0.50 TCGA-06-5416-01 7 87837706 87837706 C A SRI Intron 0.38 TCGA-06-5416-01 7 8790784 8790784 G T NXPH1 Missense_Mutation p.E67D 0.15 tolerated(0.36) benign(0.438) TCGA-06-5416-01 7 88965288 88965288 C T ZNF804B Missense_Mutation p.P998S 0.46 tolerated(0.26) benign(0.003) TCGA-06-5416-01 7 88965756 88965756 G A ZNF804B Missense_Mutation p.E1154K 0.13 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 89790389 89790389 C T STEAP1 Missense_Mutation p.P119S 0.20 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 7 89856728 89856728 C T STEAP2 Silent p.F312F 0.20 TCGA-06-5416-01 7 89903303 89903303 C A C7orf63 Missense_Mutation p.A288D 0.36 deleterious(0.01) possibly_damaging(0.53) TCGA-06-5416-01 7 89915678 89915678 C A C7orf63 Missense_Mutation p.L541I 0.22 deleterious(0.03) benign(0.019) TCGA-06-5416-01 7 89984496 89984496 G A GTPBP10 Missense_Mutation p.R139Q 0.24 tolerated(0.16) benign(0.025) TCGA-06-5416-01 7 899895 899895 G A SUN1 Missense_Mutation p.R552Q 0.41 tolerated(0.59) benign(0.001) TCGA-06-5416-01 7 899918 899918 C T SUN1 Missense_Mutation p.R560W 0.22 deleterious(0) possibly_damaging(0.539) TCGA-06-5416-01 7 90585056 90585056 G A CDK14 Missense_Mutation p.E273K 0.44 deleterious(0) probably_damaging(0.966) TCGA-06-5416-01 7 90741897 90741897 C T CDK14 Missense_Mutation p.L381F 0.22 tolerated(0.49) benign(0.02) TCGA-06-5416-01 7 90895377 90895377 G A FZD1 Silent p.A394A 0.26 TCGA-06-5416-01 7 912936 912936 C T SUN1 Missense_Mutation p.R776W 0.48 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 91603230 91603230 G A AKAP9 Missense_Mutation p.R85K 0.46 benign(0.009) TCGA-06-5416-01 7 91630434 91630434 C T AKAP9 Silent p.V401V 0.47 TCGA-06-5416-01 7 91631226 91631226 G T AKAP9 Missense_Mutation p.Q665H 0.16 possibly_damaging(0.468) TCGA-06-5416-01 7 91651563 91651563 G A AKAP9 Silent p.Q1283Q 0.47 TCGA-06-5416-01 7 91652155 91652155 C A AKAP9 Missense_Mutation p.S1327Y 0.46 possibly_damaging(0.452) TCGA-06-5416-01 7 91660827 91660827 T G AKAP9 Missense_Mutation p.F1416C 0.17 benign(0.033) TCGA-06-5416-01 7 91690585 91690585 G A AKAP9 Silent p.A1871A 0.41 TCGA-06-5416-01 7 91709392 91709392 C T AKAP9 Silent p.L2649L 0.20 TCGA-06-5416-01 7 91746369 91746369 G T CYP51A1 Missense_Mutation p.P447Q 0.14 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 7 91852280 91852280 G A KRIT1 Nonsense_Mutation p.R423* 0.43 TCGA-06-5416-01 7 92020654 92020654 C T ANKIB1 Missense_Mutation p.R743C 0.28 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 7 92098660 92098660 A G ERVW-1 Missense_Mutation p.F346L 0.41 tolerated(0.44) benign(0.035) TCGA-06-5416-01 7 92132500 92132500 T C PEX1 Missense_Mutation p.D694G 0.26 deleterious(0.04) benign(0.098) TCGA-06-5416-01 7 92158931 92158931 G T RBM48 Missense_Mutation p.D85Y 0.27 deleterious(0.01) possibly_damaging(0.905) TCGA-06-5416-01 7 92161757 92161757 T C RBM48 Silent p.G114G 0.07 TCGA-06-5416-01 7 92163853 92163853 C T RBM48 Missense_Mutation p.P196S 0.45 tolerated(0.21) possibly_damaging(0.821) TCGA-06-5416-01 7 927141 927141 C A GET4 Missense_Mutation p.L151I 0.20 tolerated(0.23) benign(0.008) TCGA-06-5416-01 7 92730826 92730826 G A SAMD9 Missense_Mutation p.R1529C 0.45 deleterious(0) possibly_damaging(0.87) TCGA-06-5416-01 7 92760474 92760474 G A SAMD9L 3'UTR 0.29 TCGA-06-5416-01 7 92761818 92761818 G A SAMD9L Missense_Mutation p.A1156V 0.42 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 7 92762118 92762118 G T SAMD9L Missense_Mutation p.S1056Y 0.45 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 7 92869197 92869197 G T CCDC132 Nonsense_Mutation p.E18* 0.21 TCGA-06-5416-01 7 92905637 92905637 C A CCDC132 Intron 0.17 TCGA-06-5416-01 7 93536149 93536149 A C GNGT1 Missense_Mutation p.M31L 0.40 tolerated(0.32) benign(0) TCGA-06-5416-01 7 94049547 94049547 C T COL1A2 Silent p.G694G 0.42 TCGA-06-5416-01 7 94052429 94052429 C T COL1A2 Missense_Mutation p.A855V 0.23 unknown(0) TCGA-06-5416-01 7 94163044 94163044 G T CASD1 Missense_Mutation p.M186I 0.44 tolerated(0.44) benign(0.002) TCGA-06-5416-01 7 94217917 94217917 C A SGCE Intron 0.33 TCGA-06-5416-01 7 94248188 94248188 C A SGCE Missense_Mutation p.D182Y 0.19 deleterious(0.05) probably_damaging(0.997) TCGA-06-5416-01 7 94740616 94740616 G A PPP1R9A Missense_Mutation p.E481K 0.43 deleterious(0) possibly_damaging(0.844) TCGA-06-5416-01 7 94740673 94740673 C T PPP1R9A Silent p.L500L 0.24 TCGA-06-5416-01 7 94931639 94931639 C T PON1 Missense_Mutation p.D263N 0.18 tolerated(0.4) benign(0.002) TCGA-06-5416-01 7 94944756 94944756 C A PON1 Missense_Mutation p.G83V 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 94993272 94993272 G A PON3 Missense_Mutation p.R200C 0.19 tolerated(0.07) benign(0.018) TCGA-06-5416-01 7 94993332 94993332 T C PON3 Missense_Mutation p.T180A 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 7 94996701 94996701 T A PON3 Missense_Mutation p.K156I 0.48 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 7 95115346 95115346 C T ASB4 Silent p.F21F 0.49 TCGA-06-5416-01 7 95216338 95216338 G A PDK4 Missense_Mutation p.A360V 0.16 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 7 96650166 96650166 C T DLX5 Missense_Mutation p.S251N 0.37 tolerated(0.09) possibly_damaging(0.827) TCGA-06-5416-01 7 97619412 97619412 C T OCM2 Missense_Mutation p.S2N 0.20 deleterious(0) possibly_damaging(0.677) TCGA-06-5416-01 7 97821662 97821662 G A LMTK2 Missense_Mutation p.E629K 0.22 deleterious(0.03) benign(0.356) TCGA-06-5416-01 7 97822234 97822234 C A LMTK2 Silent p.S819S 0.45 TCGA-06-5416-01 7 97833308 97833308 G T LMTK2 Missense_Mutation p.K1431N 0.50 deleterious(0.01) probably_damaging(0.963) TCGA-06-5416-01 7 97833371 97833371 G A LMTK2 Silent p.P1452P 0.20 TCGA-06-5416-01 7 97991677 97991677 G T BAIAP2L1 Missense_Mutation p.A40D 0.38 deleterious(0) probably_damaging(1) TCGA-06-5416-01 7 98249077 98249077 G A NPTX2 Silent p.E183E 0.17 TCGA-06-5416-01 7 98547820 98547820 C T TRRAP Missense_Mutation p.R1750C 0.27 probably_damaging(0.999) TCGA-06-5416-01 7 98581716 98581716 C T TRRAP Missense_Mutation p.S3012L 0.20 benign(0.012) TCGA-06-5416-01 7 98602943 98602943 G A TRRAP Silent p.E3561E 0.14 TCGA-06-5416-01 7 98633219 98633219 C T SMURF1 Missense_Mutation p.D670N 0.21 tolerated(0.06) benign(0.042) TCGA-06-5416-01 7 98645333 98645333 C T SMURF1 Missense_Mutation p.E402K 0.47 tolerated(0.6) possibly_damaging(0.824) TCGA-06-5416-01 7 98649045 98649045 C A SMURF1 Missense_Mutation p.Q247H 0.18 tolerated(0.37) benign(0.314) TCGA-06-5416-01 7 98655135 98655135 C T SMURF1 Nonsense_Mutation p.W81* 0.21 TCGA-06-5416-01 7 98985718 98985718 G A ARPC1B Missense_Mutation p.A76T 0.21 deleterious(0.02) benign(0.024) TCGA-06-5416-01 7 99051603 99051603 G A CPSF4 Silent p.P195P 0.45 TCGA-06-5416-01 7 99084805 99084805 G A ZNF789 Silent p.R324R 0.20 TCGA-06-5416-01 7 99146010 99146010 A G FAM200A Silent p.D7D 0.21 TCGA-06-5416-01 7 99161741 99161741 C T ZNF655 Intron 0.39 TCGA-06-5416-01 7 99264429 99264429 C A CYP3A5 Intron 0.23 TCGA-06-5416-01 7 99303208 99303208 T G CYP3A7 Missense_Mutation p.K476T 0.46 tolerated(0.05) benign(0.215) TCGA-06-5416-01 7 99308374 99308374 T C CYP3A7 Missense_Mutation p.D336G 0.19 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 7 99312198 99312198 G A CYP3A7 Missense_Mutation p.R260C 0.44 deleterious(0) probably_damaging(0.92) TCGA-06-5416-01 7 99381700 99381700 G T CYP3A4 Missense_Mutation p.A2D 0.17 tolerated(1) benign(0) TCGA-06-5416-01 7 99490070 99490070 G A TRIM4 Missense_Mutation p.R407C 0.21 deleterious(0.02) benign(0.376) TCGA-06-5416-01 7 99621372 99621372 T C ZKSCAN1 Silent p.C81C 0.13 TCGA-06-5416-01 7 99654930 99654930 C A ZSCAN21 Missense_Mutation p.L101I 0.52 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 7 99662171 99662171 G T ZSCAN21 Missense_Mutation p.K451N 0.20 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 7 99757800 99757800 C T GAL3ST4 Silent p.A404A 0.42 TCGA-06-5416-01 7 99778191 99778191 G A STAG3 Silent p.P4P 0.42 TCGA-06-5416-01 7 99796980 99796980 G T STAG3 Missense_Mutation p.E521D 0.26 tolerated(0.1) benign(0.064) TCGA-06-5416-01 7 99797196 99797196 G T STAG3 Nonsense_Mutation p.E536* 0.25 TCGA-06-5416-01 7 99808652 99808652 G T STAG3 Missense_Mutation p.R1086I 0.20 tolerated(0.11) benign(0.418) TCGA-06-5416-01 7 99809501 99809501 T C STAG3 Splice_Site p.X1199_splice 0.40 TCGA-06-5416-01 7 99817605 99817605 G A PVRIG Silent p.R24R 0.55 TCGA-06-5416-01 7 99917327 99917327 G A SPDYE3 Missense_Mutation p.A496T 0.23 tolerated_low_confidence(0.08) probably_damaging(0.987) TCGA-06-5416-01 8 100147344 100147344 G A VPS13B Silent p.E468E 0.45 TCGA-06-5416-01 8 100443846 100443846 A C VPS13B Missense_Mutation p.E1055A 0.42 deleterious(0) possibly_damaging(0.838) TCGA-06-5416-01 8 10065367 10065367 G T MSRA Missense_Mutation p.R56I 0.18 deleterious(0.01) benign(0.239) TCGA-06-5416-01 8 100789120 100789120 C T VPS13B Silent p.C2480C 0.21 TCGA-06-5416-01 8 100789154 100789154 C A VPS13B Missense_Mutation p.L2492I 0.18 deleterious(0.01) possibly_damaging(0.636) TCGA-06-5416-01 8 100829992 100829992 C T VPS13B Silent p.C2799C 0.40 TCGA-06-5416-01 8 100866359 100866359 A G VPS13B Missense_Mutation p.Y3606C 0.36 deleterious(0) possibly_damaging(0.759) TCGA-06-5416-01 8 100871656 100871656 C T VPS13B Silent p.F3689F 0.28 TCGA-06-5416-01 8 101074971 101074971 C A RGS22 Missense_Mutation p.E454D 0.10 tolerated(0.39) benign(0.025) TCGA-06-5416-01 8 101145896 101145896 G A FBXO43 3'UTR 0.12 TCGA-06-5416-01 8 101146179 101146179 G A FBXO43 Nonsense_Mutation p.R660* 0.30 TCGA-06-5416-01 8 101153172 101153172 A G FBXO43 Missense_Mutation p.L437S 0.46 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 101153423 101153423 A G FBXO43 Silent p.G353G 0.42 TCGA-06-5416-01 8 101243454 101243454 C T SPAG1 Silent p.A642A 0.17 TCGA-06-5416-01 8 101272209 101272209 C A RNF19A Missense_Mutation p.D567Y 0.30 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 8 101287192 101287192 G T RNF19A Missense_Mutation p.S291Y 0.22 deleterious(0.02) probably_damaging(0.995) TCGA-06-5416-01 8 101300201 101300201 C T RNF19A Missense_Mutation p.G68S 0.40 tolerated_low_confidence(0.43) benign(0.003) TCGA-06-5416-01 8 101563329 101563329 A G ANKRD46 Intron 0.88 TCGA-06-5416-01 8 102381414 102381414 G A NACAP1 RNA 0.87 TCGA-06-5416-01 8 103297373 103297373 C T UBR5 Missense_Mutation p.R1893Q 0.82 tolerated(0.4) probably_damaging(0.945) TCGA-06-5416-01 8 103358482 103358482 C T UBR5 Missense_Mutation p.E240K 0.78 deleterious(0.01) possibly_damaging(0.833) TCGA-06-5416-01 8 103572847 103572847 C T ODF1 Missense_Mutation p.S163L 0.37 deleterious(0.02) probably_damaging(0.968) TCGA-06-5416-01 8 104064992 104064992 C T ATP6V1C1 Nonsense_Mutation p.R139* 0.41 TCGA-06-5416-01 8 104065045 104065045 G T ATP6V1C1 Missense_Mutation p.K156N 0.80 deleterious(0.02) probably_damaging(0.947) TCGA-06-5416-01 8 104336783 104336783 C T FZD6 Missense_Mutation p.T150I 0.50 tolerated(0.13) benign(0.002) TCGA-06-5416-01 8 104341997 104341997 G T FZD6 Missense_Mutation p.K552N 0.79 deleterious(0.02) probably_damaging(0.999) TCGA-06-5416-01 8 104387965 104387965 G A CTHRC1 Splice_Site p.X51_splice 0.43 TCGA-06-5416-01 8 104390296 104390296 A C CTHRC1 Missense_Mutation p.R138S 0.44 deleterious(0) possibly_damaging(0.468) TCGA-06-5416-01 8 104427079 104427079 G A SLC25A32 Silent p.G29G 0.44 TCGA-06-5416-01 8 104432643 104432643 G - DCAF13 Frame_Shift_Del p.K226Nfs*23 0.13 TCGA-06-5416-01 8 10464289 10464289 C A RP1L1 3'UTR 0.29 TCGA-06-5416-01 8 10466777 10466777 G A RP1L1 Missense_Mutation p.R1611W 0.20 unknown(0) TCGA-06-5416-01 8 10466778 10466778 G A RP1L1 Silent p.L1610L 0.20 TCGA-06-5416-01 8 10469248 10469248 G T RP1L1 Missense_Mutation p.S787Y 0.20 possibly_damaging(0.697) TCGA-06-5416-01 8 10469891 10469891 C T RP1L1 Missense_Mutation p.D573N 0.42 benign(0.003) TCGA-06-5416-01 8 10480118 10480118 C T RP1L1 Silent p.T198T 0.43 TCGA-06-5416-01 8 10480499 10480499 G A RP1L1 Silent p.R71R 0.30 TCGA-06-5416-01 8 104897569 104897569 G A RIMS2 Missense_Mutation p.D248N 0.46 tolerated_low_confidence(0.4) benign(0.008) TCGA-06-5416-01 8 104897909 104897909 G A RIMS2 Missense_Mutation p.R361Q 0.43 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5416-01 8 104897914 104897914 C T RIMS2 Missense_Mutation p.R363W 0.16 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 8 104973344 104973344 G T RIMS2 Missense_Mutation p.G918V 0.40 deleterious_low_confidence(0) probably_damaging(1) TCGA-06-5416-01 8 105010439 105010439 G T RIMS2 Intron 0.18 TCGA-06-5416-01 8 105393517 105393517 C T DPYS Missense_Mutation p.R490H 0.19 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 8 105509698 105509698 G T LRP12 Missense_Mutation p.A361D 0.19 deleterious(0.03) probably_damaging(0.932) TCGA-06-5416-01 8 105511590 105511590 C A LRP12 Missense_Mutation p.D144Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 10756202 10756202 C T XKR6 Missense_Mutation p.A396T 0.38 deleterious(0.01) possibly_damaging(0.71) TCGA-06-5416-01 8 107726164 107726164 C A OXR1 Missense_Mutation p.S637Y 0.16 tolerated(0.16) possibly_damaging(0.707) TCGA-06-5416-01 8 107773104 107773104 T C ABRA 3'UTR 0.12 TCGA-06-5416-01 8 107782119 107782119 C A ABRA Missense_Mutation p.E100D 0.28 tolerated(0.15) benign(0.167) TCGA-06-5416-01 8 108970471 108970471 G A RSPO2 Silent p.S151S 0.27 TCGA-06-5416-01 8 109796428 109796428 C T TMEM74 Silent p.A300A 0.20 TCGA-06-5416-01 8 109796947 109796947 C T TMEM74 Silent p.S127S 0.33 TCGA-06-5416-01 8 109797097 109797097 C T TMEM74 Silent p.Q77Q 0.15 TCGA-06-5416-01 8 110100079 110100079 C T TRHR Missense_Mutation p.S113F 0.16 deleterious(0) possibly_damaging(0.905) TCGA-06-5416-01 8 110100147 110100147 C A TRHR Missense_Mutation p.L136I 0.16 tolerated(0.31) benign(0.011) TCGA-06-5416-01 8 110308731 110308731 C T NUDCD1 Missense_Mutation p.R114H 0.12 deleterious(0.03) probably_damaging(0.932) TCGA-06-5416-01 8 110432805 110432805 T G PKHD1L1 Missense_Mutation p.F861L 0.16 tolerated(0.25) benign(0.031) TCGA-06-5416-01 8 110439336 110439336 C T PKHD1L1 Missense_Mutation p.A984V 0.11 deleterious(0.03) benign(0.001) TCGA-06-5416-01 8 110455255 110455255 C T PKHD1L1 Missense_Mutation p.L1492F 0.13 tolerated(0.08) possibly_damaging(0.814) TCGA-06-5416-01 8 110457300 110457300 G T PKHD1L1 Missense_Mutation p.Q1734H 0.14 tolerated(0.07) benign(0.022) TCGA-06-5416-01 8 110471871 110471871 C A PKHD1L1 Missense_Mutation p.A2351D 0.13 tolerated(0.16) benign(0.002) TCGA-06-5416-01 8 110476762 110476762 G A PKHD1L1 Silent p.P2567P 0.30 TCGA-06-5416-01 8 110478960 110478960 C A PKHD1L1 Missense_Mutation p.S2856Y 0.24 deleterious(0) possibly_damaging(0.866) TCGA-06-5416-01 8 110492270 110492270 A T PKHD1L1 Missense_Mutation p.I3077F 0.09 deleterious(0) benign(0.381) TCGA-06-5416-01 8 110493715 110493715 G T PKHD1L1 Missense_Mutation p.K3127N 0.14 tolerated(0.25) benign(0.002) TCGA-06-5416-01 8 110504156 110504156 C T PKHD1L1 Missense_Mutation p.S3390L 0.36 deleterious(0.01) benign(0.019) TCGA-06-5416-01 8 110504157 110504157 G A PKHD1L1 Silent p.S3390S 0.58 TCGA-06-5416-01 8 110576705 110576705 G A EBAG9 Missense_Mutation p.E187K 0.29 deleterious(0) possibly_damaging(0.866) TCGA-06-5416-01 8 11058102 11058102 C A XKR6 Missense_Mutation p.Q249H 0.27 deleterious(0) possibly_damaging(0.673) TCGA-06-5416-01 8 110980478 110980478 G A KCNV1 Missense_Mutation p.R448C 0.22 deleterious(0.03) possibly_damaging(0.585) TCGA-06-5416-01 8 110980576 110980576 G A KCNV1 Missense_Mutation p.S415L 0.22 deleterious(0) possibly_damaging(0.771) TCGA-06-5416-01 8 110984821 110984821 G A KCNV1 Silent p.F219F 0.53 TCGA-06-5416-01 8 11174205 11174205 C A MTMR9 Silent p.R379R 0.26 TCGA-06-5416-01 8 11177145 11177145 A G MTMR9 Intron 0.24 TCGA-06-5416-01 8 113246671 113246671 G A CSMD3 Missense_Mutation p.R3555C 0.20 deleterious(0) benign(0.276) TCGA-06-5416-01 8 113331173 113331173 A C CSMD3 Missense_Mutation p.I2418S 0.16 tolerated(0.14) possibly_damaging(0.828) TCGA-06-5416-01 8 113649133 113649133 A G CSMD3 Missense_Mutation p.S1210P 0.18 tolerated(1) benign(0.013) TCGA-06-5416-01 8 114031316 114031316 C A CSMD3 Missense_Mutation p.G337V 0.17 deleterious(0) probably_damaging(0.911) TCGA-06-5416-01 8 11412885 11412885 C T BLK Missense_Mutation p.R222C 0.22 deleterious(0.02) benign(0.115) TCGA-06-5416-01 8 11418929 11418929 G A BLK Missense_Mutation p.R383Q 0.48 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 8 114326896 114326896 C T CSMD3 Missense_Mutation p.R102K 0.23 tolerated(0.82) benign(0.071) TCGA-06-5416-01 8 11606589 11606589 C T GATA4 Missense_Mutation p.R260W 0.20 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 8 11615857 11615857 C T GATA4 Missense_Mutation p.S401L 0.18 tolerated(0.14) benign(0.012) TCGA-06-5416-01 8 116430602 116430602 C T TRPS1 Missense_Mutation p.G927R 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 116616761 116616761 C T TRPS1 Missense_Mutation p.G479S 0.42 tolerated_low_confidence(1) benign(0.007) TCGA-06-5416-01 8 116631555 116631555 C T TRPS1 Missense_Mutation p.R257Q 0.19 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-06-5416-01 8 116632187 116632187 C A TRPS1 Missense_Mutation p.K46N 0.45 deleterious_low_confidence(0) benign(0.1) TCGA-06-5416-01 8 117768010 117768010 G C EIF3H Silent p.G9G 0.13 TCGA-06-5416-01 8 117783821 117783821 G T UTP23 Missense_Mutation p.G164C 0.23 deleterious(0.01) possibly_damaging(0.662) TCGA-06-5416-01 8 117868944 117868944 C T RAD21 Missense_Mutation p.G252E 0.23 tolerated(1) benign(0.009) TCGA-06-5416-01 8 119122545 119122545 C T EXT1 Silent p.E247E 0.20 TCGA-06-5416-01 8 119452169 119452169 G A SAMD12 Missense_Mutation p.A75V 0.12 tolerated(0.49) probably_damaging(0.946) TCGA-06-5416-01 8 11995262 11995262 G A USP17L2 Silent p.F336F 0.17 TCGA-06-5416-01 8 11995473 11995473 G A USP17L2 Missense_Mutation p.T266M 0.12 deleterious(0.05) possibly_damaging(0.612) TCGA-06-5416-01 8 11995523 11995523 C T USP17L2 Silent p.E249E 0.20 TCGA-06-5416-01 8 11996148 11996148 G A USP17L2 Missense_Mutation p.S41L 0.10 tolerated(0.13) possibly_damaging(0.702) TCGA-06-5416-01 8 120118233 120118233 G T COLEC10 Missense_Mutation p.D213Y 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 120118469 120118469 G A COLEC10 3'UTR 0.17 TCGA-06-5416-01 8 120233917 120233917 G A MAL2 Missense_Mutation p.A75T 0.17 tolerated(0.31) probably_damaging(0.997) TCGA-06-5416-01 8 120252516 120252516 C T MAL2 Missense_Mutation p.P139S 0.64 tolerated(0.28) benign(0.17) TCGA-06-5416-01 8 120598464 120598464 A G ENPP2 Silent p.D495D 0.15 TCGA-06-5416-01 8 120608105 120608105 C T ENPP2 Silent p.A370A 0.16 TCGA-06-5416-01 8 120608191 120608191 C T ENPP2 Missense_Mutation p.V342I 0.35 tolerated_low_confidence(0.39) benign(0.006) TCGA-06-5416-01 8 121015241 121015241 C T DEPTOR Silent p.I272I 0.17 TCGA-06-5416-01 8 121170440 121170440 A C COL14A1 Silent p.R54R 0.12 TCGA-06-5416-01 8 121170486 121170486 G A COL14A1 Splice_Site p.X69_splice 0.42 TCGA-06-5416-01 8 121174733 121174733 G T COL14A1 Missense_Mutation p.D92Y 0.14 deleterious(0) possibly_damaging(0.905) TCGA-06-5416-01 8 121210077 121210077 G T COL14A1 Missense_Mutation p.R207I 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 121216030 121216030 C T COL14A1 Silent p.F320F 0.14 TCGA-06-5416-01 8 121295986 121295986 T G COL14A1 Missense_Mutation p.N1312K 0.18 tolerated(0.16) benign(0.002) TCGA-06-5416-01 8 121353594 121353594 G A COL14A1 Missense_Mutation p.E1606K 0.45 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 8 121408297 121408297 G A MRPL13 3'UTR 0.41 TCGA-06-5416-01 8 122626456 122626456 G T HAS2 Missense_Mutation p.L518I 0.06 tolerated(0.58) benign(0.007) TCGA-06-5416-01 8 123964042 123964042 G A ZHX2 Missense_Mutation p.D98N 0.51 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 8 123965169 123965169 C T ZHX2 Silent p.I473I 0.31 TCGA-06-5416-01 8 123965640 123965640 G A ZHX2 Silent p.S630S 0.17 TCGA-06-5416-01 8 123965866 123965866 G A ZHX2 Missense_Mutation p.D706N 0.18 tolerated(1) benign(0.002) TCGA-06-5416-01 8 124089394 124089394 A C TBC1D31 Missense_Mutation p.K41Q 0.32 deleterious(0.02) benign(0.045) TCGA-06-5416-01 8 124219636 124219636 G A FAM83A Missense_Mutation p.R338H 0.29 tolerated(0.53) benign(0.001) TCGA-06-5416-01 8 124221851 124221851 G T FAM83A 3'UTR 0.15 TCGA-06-5416-01 8 124243675 124243675 G A C8orf76 Missense_Mutation p.S227F 0.34 deleterious(0) benign(0.072) TCGA-06-5416-01 8 124266294 124266294 T G ZHX1 Missense_Mutation p.E631D 0.35 tolerated(0.23) benign(0.001) TCGA-06-5416-01 8 124267298 124267298 G A ZHX1 Missense_Mutation p.P297S 0.17 tolerated(0.07) benign(0.369) TCGA-06-5416-01 8 124267775 124267775 G A ZHX1 Missense_Mutation p.R138C 0.20 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 8 124333243 124333243 A C ATAD2 3'UTR 0.32 TCGA-06-5416-01 8 124369902 124369902 T C ATAD2 Missense_Mutation p.Q486R 0.19 tolerated(0.06) benign(0.013) TCGA-06-5416-01 8 124664459 124664459 G A KLHL38 Silent p.I236I 0.45 TCGA-06-5416-01 8 124664661 124664661 G A KLHL38 Missense_Mutation p.S169L 0.13 deleterious(0) possibly_damaging(0.605) TCGA-06-5416-01 8 124724956 124724956 C A ANXA13 Missense_Mutation p.R59L 0.16 tolerated(0.05) benign(0.068) TCGA-06-5416-01 8 124748110 124748110 G T ANXA13 Nonsense_Mutation p.S8* 0.15 TCGA-06-5416-01 8 124789561 124789561 C A FAM91A1 Missense_Mutation p.D122E 0.16 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 124810351 124810351 G A FAM91A1 Missense_Mutation p.R478H 0.52 deleterious(0.05) probably_damaging(0.958) TCGA-06-5416-01 8 124978424 124978424 G A FER1L6 Missense_Mutation p.R93H 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 124985695 124985695 G T FER1L6 Nonsense_Mutation p.G157* 0.13 TCGA-06-5416-01 8 124985733 124985733 G A FER1L6 Silent p.G169G 0.38 TCGA-06-5416-01 8 124988173 124988173 G T FER1L6 Missense_Mutation p.R240I 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 124993036 124993036 C T FER1L6 Silent p.F465F 0.13 TCGA-06-5416-01 8 125047562 125047562 C T FER1L6 Silent p.V777V 0.14 TCGA-06-5416-01 8 125131970 125131970 T C FER1L6 Missense_Mutation p.L1838P 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 125326120 125326120 C A TMEM65 3'UTR 0.48 TCGA-06-5416-01 8 125464449 125464449 C A TRMT12 Silent p.S427S 0.16 TCGA-06-5416-01 8 125499589 125499589 T G RNF139 Missense_Mutation p.F567V 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 125565272 125565272 C A MTSS1 Missense_Mutation p.K743N 0.36 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 125568594 125568594 C T MTSS1 Missense_Mutation p.R428H 0.12 deleterious(0.03) probably_damaging(0.997) TCGA-06-5416-01 8 12580511 12580511 C A LONRF1 3'UTR 0.28 TCGA-06-5416-01 8 12583383 12583383 C T LONRF1 Silent p.E672E 0.19 TCGA-06-5416-01 8 12592883 12592883 G T LONRF1 Missense_Mutation p.P493H 0.32 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 8 125989564 125989564 G T ZNF572 Nonsense_Mutation p.G352* 0.22 TCGA-06-5416-01 8 125989599 125989599 A C ZNF572 Missense_Mutation p.E363D 0.16 deleterious(0.01) benign(0.197) TCGA-06-5416-01 8 125989890 125989890 G A ZNF572 Silent p.R460R 0.38 TCGA-06-5416-01 8 126030397 126030397 T G SQLE Missense_Mutation p.L434R 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 8 126036770 126036770 G A KIAA0196 3'UTR 0.09 TCGA-06-5416-01 8 126073364 126073364 G A KIAA0196 Missense_Mutation p.A494V 0.71 tolerated(0.09) probably_damaging(0.955) TCGA-06-5416-01 8 126075832 126075832 G A KIAA0196 Missense_Mutation p.S447L 0.29 tolerated(0.68) benign(0.117) TCGA-06-5416-01 8 126369466 126369466 C A NSMCE2 Missense_Mutation p.L142I 0.27 tolerated(0.28) benign(0.009) TCGA-06-5416-01 8 12957535 12957535 G A DLC1 Missense_Mutation p.R771W 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 12990516 12990516 G A DLC1 Intron 0.23 TCGA-06-5416-01 8 130760714 130760714 G A GSDMC 3'UTR 0.47 TCGA-06-5416-01 8 130789803 130789803 T A GSDMC Missense_Mutation p.N11Y 0.19 deleterious(0.02) benign(0.259) TCGA-06-5416-01 8 131067026 131067026 T G ASAP1 Missense_Mutation p.E1114A 0.48 tolerated(0.6) benign(0.012) TCGA-06-5416-01 8 131793008 131793008 G A ADCY8 Silent p.G1128G 0.17 TCGA-06-5416-01 8 131812707 131812707 G A ADCY8 Missense_Mutation p.R1009C 0.47 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 131826377 131826377 G T ADCY8 Missense_Mutation p.L951I 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-06-5416-01 8 131848614 131848614 G A ADCY8 Silent p.L862L 0.23 TCGA-06-5416-01 8 132051743 132051743 G A ADCY8 Silent p.F279F 0.44 TCGA-06-5416-01 8 132052002 132052002 T G ADCY8 Missense_Mutation p.K193T 0.17 deleterious(0.01) probably_damaging(0.981) TCGA-06-5416-01 8 132980602 132980602 G T EFR3A Missense_Mutation p.D306Y 0.19 deleterious(0) possibly_damaging(0.482) TCGA-06-5416-01 8 132982784 132982784 C T EFR3A Silent p.F351F 0.49 TCGA-06-5416-01 8 133141777 133141777 C T KCNQ3 Missense_Mutation p.R784Q 0.25 deleterious(0.02) possibly_damaging(0.477) TCGA-06-5416-01 8 133192501 133192501 C T KCNQ3 Missense_Mutation p.R227Q 0.25 deleterious(0.01) probably_damaging(0.985) TCGA-06-5416-01 8 133192565 133192565 G T KCNQ3 Missense_Mutation p.L206M 0.32 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 8 13356568 13356568 C T DLC1 Missense_Mutation p.R338H 0.20 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 8 13356800 13356800 G T DLC1 Missense_Mutation p.P261T 0.16 tolerated_low_confidence(0.28) benign(0.002) TCGA-06-5416-01 8 13356898 13356898 G T DLC1 Missense_Mutation p.S228Y 0.19 deleterious_low_confidence(0) possibly_damaging(0.494) TCGA-06-5416-01 8 133669125 133669125 T C LRRC6 Silent p.E69E 0.16 TCGA-06-5416-01 8 133806667 133806667 G A PHF20L1 Missense_Mutation p.R32Q 0.43 deleterious(0.04) probably_damaging(0.997) TCGA-06-5416-01 8 133827001 133827001 G T PHF20L1 Missense_Mutation p.K350N 0.44 deleterious(0) possibly_damaging(0.859) TCGA-06-5416-01 8 133836255 133836255 C T PHF20L1 Missense_Mutation p.S529L 0.39 tolerated(0.4) benign(0) TCGA-06-5416-01 8 133885336 133885336 C T TG Missense_Mutation p.R170C 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 133900361 133900361 G A TG Missense_Mutation p.R770K 0.24 tolerated(0.19) benign(0.01) TCGA-06-5416-01 8 133906156 133906156 C T TG Missense_Mutation p.R995C 0.51 deleterious(0) possibly_damaging(0.847) TCGA-06-5416-01 8 133948018 133948018 G A TG Silent p.G1650G 0.15 TCGA-06-5416-01 8 133953709 133953709 G A TG Missense_Mutation p.D1719N 0.47 deleterious(0) possibly_damaging(0.647) TCGA-06-5416-01 8 134057345 134057345 G A SLA Missense_Mutation p.S163L 0.43 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 134237761 134237761 C T WISP1 Missense_Mutation p.P247S 0.44 deleterious(0.02) possibly_damaging(0.809) TCGA-06-5416-01 8 134472099 134472099 G A ST3GAL1 Missense_Mutation p.R311C 0.46 probably_damaging(0.99) TCGA-06-5416-01 8 134478211 134478211 G A ST3GAL1 Silent p.A143A 0.21 TCGA-06-5416-01 8 135614730 135614730 C T ZFAT Missense_Mutation p.R411H 0.41 tolerated(0.05) probably_damaging(0.998) TCGA-06-5416-01 8 135622800 135622800 T C ZFAT Missense_Mutation p.K183E 0.23 deleterious(0.03) probably_damaging(0.98) TCGA-06-5416-01 8 13948039 13948039 G A SGCZ Silent p.C284C 0.24 TCGA-06-5416-01 8 13948085 13948085 G T SGCZ Missense_Mutation p.S269Y 0.44 deleterious(0.01) possibly_damaging(0.526) TCGA-06-5416-01 8 139601654 139601654 C T COL22A1 Missense_Mutation p.D1575N 0.27 unknown(0) TCGA-06-5416-01 8 139616980 139616980 C A COL22A1 Missense_Mutation p.K1379N 0.44 unknown(0) TCGA-06-5416-01 8 139631728 139631728 T C COL22A1 Silent p.L1265L 0.19 TCGA-06-5416-01 8 139649020 139649020 C A COL22A1 Missense_Mutation p.G1174C 0.16 unknown(0) TCGA-06-5416-01 8 139728489 139728489 C T COL22A1 Missense_Mutation p.R815K 0.15 possibly_damaging(0.896) TCGA-06-5416-01 8 139729098 139729098 C T COL22A1 Silent p.E790E 0.17 TCGA-06-5416-01 8 139791795 139791795 C A COL22A1 Missense_Mutation p.G554V 0.21 unknown(0) TCGA-06-5416-01 8 139890004 139890004 C T COL22A1 Missense_Mutation p.R216H 0.36 unknown(0) TCGA-06-5416-01 8 139890402 139890402 G A COL22A1 Silent p.S83S 0.21 TCGA-06-5416-01 8 139890409 139890409 C T COL22A1 Missense_Mutation p.R81H 0.39 unknown(0) TCGA-06-5416-01 8 140631300 140631300 A C KCNK9 Missense_Mutation p.F109C 0.18 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 8 140922447 140922447 G A TRAPPC9 Missense_Mutation p.R1068W 0.19 tolerated(0.19) probably_damaging(0.992) TCGA-06-5416-01 8 141321445 141321445 C T TRAPPC9 Silent p.E606E 0.21 TCGA-06-5416-01 8 141415750 141415750 C T TRAPPC9 Missense_Mutation p.G410R 0.20 tolerated(0.1) probably_damaging(0.996) TCGA-06-5416-01 8 141557706 141557706 C A AGO2 Missense_Mutation p.D537Y 0.22 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 8 141745479 141745479 C T PTK2 Missense_Mutation p.R634Q 0.39 deleterious(0.01) benign(0.148) TCGA-06-5416-01 8 141774384 141774384 C A PTK2 Missense_Mutation p.D395Y 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 142151352 142151352 C T DENND3 Silent p.C104C 0.16 TCGA-06-5416-01 8 142221643 142221643 G A SLC45A4 Silent p.S765S 0.42 TCGA-06-5416-01 8 142367139 142367139 G A GPR20 Silent p.I295I 0.13 TCGA-06-5416-01 8 142481291 142481291 G A MROH5 Intron 0.42 TCGA-06-5416-01 8 142482982 142482982 G T MROH5 3'UTR 0.37 TCGA-06-5416-01 8 143395763 143395763 C T TSNARE1 Silent p.A371A 0.44 TCGA-06-5416-01 8 143436086 143436086 C A TSNARE1 5'UTR 0.53 TCGA-06-5416-01 8 143745762 143745762 G T JRK RNA 0.44 TCGA-06-5416-01 8 143784646 143784646 C T LY6K Missense_Mutation p.R119C 0.44 tolerated(0.06) possibly_damaging(0.847) TCGA-06-5416-01 8 143846491 143846491 G T LYNX1 Nonsense_Mutation p.C74* 0.26 TCGA-06-5416-01 8 143927969 143927969 G A GML Missense_Mutation p.G114R 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 143960558 143960558 C T CYP11B1 Silent p.E95E 0.25 TCGA-06-5416-01 8 144102321 144102321 T G LY6E 5'UTR 0.17 TCGA-06-5416-01 8 14412341 14412341 C T SGCZ Missense_Mutation p.R45Q 0.20 deleterious(0) possibly_damaging(0.905) TCGA-06-5416-01 8 144378481 144378481 C T ZNF696 Silent p.A212A 0.43 TCGA-06-5416-01 8 144391609 144391609 C T TOP1MT 3'UTR 0.22 TCGA-06-5416-01 8 144400208 144400208 C T TOP1MT Missense_Mutation p.D399N 0.14 tolerated(0.09) benign(0.052) TCGA-06-5416-01 8 144620199 144620199 C A ZC3H3 Missense_Mutation p.K446N 0.18 deleterious(0) probably_damaging(0.92) TCGA-06-5416-01 8 144620232 144620232 C T ZC3H3 Silent p.P435P 0.43 TCGA-06-5416-01 8 144643961 144643961 C T GSDMD Silent p.G262G 0.11 TCGA-06-5416-01 8 144644227 144644227 C A GSDMD Missense_Mutation p.L308M 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 8 144663496 144663496 G A EEF1D Silent p.S430S 0.26 TCGA-06-5416-01 8 144681746 144681746 C A TIGD5 Missense_Mutation p.P558H 0.31 tolerated(0.1) benign(0.292) TCGA-06-5416-01 8 144687799 144687799 G A PYCRL 3'UTR 0.41 TCGA-06-5416-01 8 144732473 144732473 C T ZNF623 Missense_Mutation p.S144L 0.22 deleterious(0.05) benign(0.14) TCGA-06-5416-01 8 144801568 144801568 C T MAPK15 Missense_Mutation p.R213W 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-06-5416-01 8 144808406 144808406 C T FAM83H Silent p.P1075P 0.20 TCGA-06-5416-01 8 144810202 144810202 G A FAM83H Missense_Mutation p.R477C 0.32 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 144811420 144811420 C T FAM83H Missense_Mutation p.R174Q 0.39 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 8 144812742 144812742 C T FAM83H Missense_Mutation p.R4H 0.48 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 144899194 144899194 C A PUF60 Missense_Mutation p.E422D 0.55 tolerated(0.1) benign(0.126) TCGA-06-5416-01 8 144899200 144899200 T A PUF60 Missense_Mutation p.E420D 0.31 tolerated(0.11) possibly_damaging(0.739) TCGA-06-5416-01 8 144899218 144899218 C T PUF60 Silent p.E414E 0.20 TCGA-06-5416-01 8 144921102 144921102 C T NRBP2 Missense_Mutation p.D233N 0.41 tolerated(0.34) probably_damaging(0.996) TCGA-06-5416-01 8 144940318 144940318 G A EPPK1 Silent p.F2368F 0.08 TCGA-06-5416-01 8 144940778 144940778 C T EPPK1 Missense_Mutation p.R2215H 0.49 benign(0) TCGA-06-5416-01 8 144941905 144941905 C T EPPK1 Silent p.E1839E 0.06 TCGA-06-5416-01 8 144942083 144942083 C A EPPK1 Missense_Mutation p.R1780I 0.42 benign(0.057) TCGA-06-5416-01 8 144944049 144944049 C T EPPK1 Missense_Mutation p.E1125K 0.29 benign(0.01) TCGA-06-5416-01 8 144944383 144944383 G A EPPK1 Silent p.D1013D 0.19 TCGA-06-5416-01 8 144944456 144944456 C T EPPK1 Missense_Mutation p.R989H 0.19 probably_damaging(0.938) TCGA-06-5416-01 8 144945163 144945163 C A EPPK1 Silent p.L753L 0.20 TCGA-06-5416-01 8 144991388 144991388 G A PLEC Missense_Mutation p.R4338C 0.44 probably_damaging(0.999) TCGA-06-5416-01 8 144993564 144993564 G A PLEC Silent p.I3612I 0.47 TCGA-06-5416-01 8 144993719 144993719 C T PLEC Missense_Mutation p.E3561K 0.24 probably_damaging(0.998) TCGA-06-5416-01 8 144995096 144995096 C A PLEC Nonsense_Mutation p.E3102* 0.16 TCGA-06-5416-01 8 144995173 144995173 C T PLEC Missense_Mutation p.R3076Q 0.50 probably_damaging(0.914) TCGA-06-5416-01 8 144998319 144998319 C A PLEC Missense_Mutation p.E2063D 0.54 unknown(0) TCGA-06-5416-01 8 145006141 145006141 G A PLEC Silent p.I851I 0.50 TCGA-06-5416-01 8 145010110 145010110 G A PLEC Nonsense_Mutation p.R307* 0.49 TCGA-06-5416-01 8 145060441 145060441 C T PARP10 Intron 0.47 TCGA-06-5416-01 8 145094814 145094814 C A SPATC1 Silent p.V72V 0.42 TCGA-06-5416-01 8 145094833 145094833 G A SPATC1 Missense_Mutation p.A79T 0.15 tolerated(0.1) benign(0.103) TCGA-06-5416-01 8 145094957 145094957 C T SPATC1 Missense_Mutation p.T120I 0.21 deleterious(0) benign(0.064) TCGA-06-5416-01 8 145095050 145095050 G A SPATC1 Missense_Mutation p.G151D 0.32 tolerated(0.06) benign(0.058) TCGA-06-5416-01 8 145135043 145135043 C A EXOSC4 Silent p.I123I 0.44 TCGA-06-5416-01 8 145138877 145138877 G A GPAA1 Missense_Mutation p.V184I 0.19 deleterious(0.03) benign(0.048) TCGA-06-5416-01 8 145140950 145140950 C T GPAA1 Silent p.G596G 0.21 TCGA-06-5416-01 8 145154319 145154319 G A SHARPIN Silent p.L261L 0.21 TCGA-06-5416-01 8 145158066 145158066 C A SHARPIN Missense_Mutation p.E88D 0.21 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 8 145160783 145160783 A G MAF1 Missense_Mutation p.Y32C 0.41 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 145278056 145278056 G A MROH1 Missense_Mutation p.G421S 0.29 deleterious(0.01) benign(0.305) TCGA-06-5416-01 8 145534897 145534897 C T HSF1 Missense_Mutation p.R176W 0.16 deleterious(0.01) benign(0.337) TCGA-06-5416-01 8 145616074 145616074 G A ADCK5 Missense_Mutation p.E121K 0.35 tolerated(0.43) benign(0.003) TCGA-06-5416-01 8 145625000 145625000 G A CPSF1 Missense_Mutation p.A407V 0.53 tolerated(0.42) benign(0.003) TCGA-06-5416-01 8 145649609 145649609 C T VPS28 Missense_Mutation p.A149T 0.11 tolerated(0.07) possibly_damaging(0.46) TCGA-06-5416-01 8 145662343 145662343 G A TONSL Intron 0.27 TCGA-06-5416-01 8 145666397 145666397 G A TONSL Silent p.F321F 0.46 TCGA-06-5416-01 8 145668091 145668091 C T TONSL Missense_Mutation p.D183N 0.41 tolerated(0.27) benign(0.004) TCGA-06-5416-01 8 145697807 145697807 C T KIFC2 Silent p.G557G 0.23 TCGA-06-5416-01 8 145697843 145697843 G A KIFC2 Silent p.V569V 0.47 TCGA-06-5416-01 8 145735323 145735323 G A MFSD3 Missense_Mutation p.A203T 0.32 tolerated(0.49) benign(0.056) TCGA-06-5416-01 8 145741787 145741787 G T RECQL4 Missense_Mutation p.A239D 0.11 tolerated(0.11) benign(0.014) TCGA-06-5416-01 8 145745849 145745849 G A LRRC14 Missense_Mutation p.R186Q 0.18 tolerated(1) benign(0) TCGA-06-5416-01 8 145748360 145748360 G A LRRC24 Silent p.A347A 0.20 TCGA-06-5416-01 8 145947866 145947866 G A ZNF251 Silent p.F393F 0.16 TCGA-06-5416-01 8 145948421 145948421 G A ZNF251 Silent p.V208V 0.45 TCGA-06-5416-01 8 146003438 146003438 T G ZNF34 Missense_Mutation p.N70H 0.21 tolerated(0.21) probably_damaging(0.992) TCGA-06-5416-01 8 146066752 146066752 G A ZNF7 Missense_Mutation p.R87K 0.15 tolerated(1) benign(0.002) TCGA-06-5416-01 8 146066958 146066958 G A ZNF7 Missense_Mutation p.E156K 0.19 tolerated(0.9) benign(0.039) TCGA-06-5416-01 8 146068169 146068169 G T ZNF7 Silent p.G559G 0.21 TCGA-06-5416-01 8 146068323 146068323 G A ZNF7 Missense_Mutation p.E611K 0.43 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 8 146156029 146156029 G A ZNF16 3'UTR 0.49 TCGA-06-5416-01 8 146157151 146157151 C A ZNF16 Missense_Mutation p.R341I 0.21 deleterious(0.01) possibly_damaging(0.901) TCGA-06-5416-01 8 146157710 146157710 A T ZNF16 Missense_Mutation p.C155S 0.04 tolerated(0.06) possibly_damaging(0.553) TCGA-06-5416-01 8 16026271 16026271 C A MSR1 Missense_Mutation p.R109I 0.19 deleterious(0) possibly_damaging(0.864) TCGA-06-5416-01 8 1616796 1616796 C T DLGAP2 Silent p.S624S 0.43 TCGA-06-5416-01 8 16850729 16850729 C T FGF20 Missense_Mutation p.R163H 0.46 deleterious(0) probably_damaging(0.922) TCGA-06-5416-01 8 17072750 17072750 G A ZDHHC2 Missense_Mutation p.E319K 0.16 tolerated(0.31) benign(0.357) TCGA-06-5416-01 8 1728468 1728468 A G CLN8 Missense_Mutation p.H199R 0.42 deleterious(0.05) probably_damaging(0.983) TCGA-06-5416-01 8 17613068 17613068 T C MTUS1 Silent p.E83E 0.19 TCGA-06-5416-01 8 17722085 17722085 A C FGL1 3'UTR 0.16 TCGA-06-5416-01 8 17827249 17827249 G A PCM1 Silent p.E1192E 0.20 TCGA-06-5416-01 8 17838186 17838186 G A PCM1 Missense_Mutation p.A1344T 0.39 tolerated(0.06) probably_damaging(0.956) TCGA-06-5416-01 8 17849178 17849178 T G PCM1 Silent p.A1553A 0.18 TCGA-06-5416-01 8 17851012 17851012 C T PCM1 Missense_Mutation p.R1571C 0.25 tolerated(0.07) benign(0.398) TCGA-06-5416-01 8 17914941 17914941 G A ASAH1 3'UTR 0.38 TCGA-06-5416-01 8 1791522 1791522 C A ARHGEF10 5'UTR 0.49 TCGA-06-5416-01 8 17927343 17927343 G A ASAH1 Silent p.F103F 0.11 TCGA-06-5416-01 8 1842620 1842620 C T ARHGEF10 Missense_Mutation p.T441M 0.39 tolerated(0.98) benign(0.012) TCGA-06-5416-01 8 18430175 18430175 C A PSD3 Nonsense_Mutation p.E883* 0.18 TCGA-06-5416-01 8 18729556 18729556 C A PSD3 Missense_Mutation p.R273M 0.45 deleterious_low_confidence(0.05) possibly_damaging(0.527) TCGA-06-5416-01 8 19190467 19190467 G T SH2D4A Missense_Mutation p.E61D 0.31 tolerated(0.46) benign(0.003) TCGA-06-5416-01 8 19214783 19214783 G A SH2D4A Missense_Mutation p.A195T 0.40 tolerated(0.18) benign(0.021) TCGA-06-5416-01 8 1950696 1950696 C T KBTBD11 Silent p.F446F 0.40 TCGA-06-5416-01 8 19675832 19675832 C T INTS10 Missense_Mutation p.A59V 0.15 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 8 20074818 20074818 G A ATP6V1B2 Missense_Mutation p.D417N 0.41 deleterious(0.03) benign(0.248) TCGA-06-5416-01 8 20107851 20107851 G T LZTS1 Silent p.I391I 0.21 TCGA-06-5416-01 8 20110323 20110323 G A LZTS1 Silent p.F373F 0.61 TCGA-06-5416-01 8 20110597 20110597 C T LZTS1 Missense_Mutation p.R282H 0.29 tolerated(0.59) benign(0.006) TCGA-06-5416-01 8 20112649 20112649 C T LZTS1 Missense_Mutation p.S15N 0.56 tolerated(0.35) benign(0.126) TCGA-06-5416-01 8 2017410 2017410 G A MYOM2 Missense_Mutation p.D223N 0.22 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 8 2017609 2017609 G A MYOM2 Silent p.P262P 0.22 TCGA-06-5416-01 8 2077116 2077116 G A MYOM2 Silent p.G1232G 0.17 TCGA-06-5416-01 8 21856784 21856784 C T XPO7 Silent p.L871L 0.19 TCGA-06-5416-01 8 21978667 21978667 C T HR Missense_Mutation p.E760K 0.49 deleterious(0.01) possibly_damaging(0.852) TCGA-06-5416-01 8 21984812 21984812 C A HR Missense_Mutation p.K381N 0.20 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 8 22031173 22031173 G A BMP1 Silent p.Q69Q 0.45 TCGA-06-5416-01 8 22081786 22081786 G T PHYHIP Missense_Mutation p.F137L 0.16 tolerated(0.22) benign(0.017) TCGA-06-5416-01 8 22081836 22081836 C T PHYHIP Missense_Mutation p.A121T 0.37 tolerated(0.65) benign(0.005) TCGA-06-5416-01 8 22085736 22085736 C T PHYHIP Silent p.E45E 0.22 TCGA-06-5416-01 8 22105503 22105503 G A POLR3D Missense_Mutation p.E115K 0.47 deleterious(0.02) possibly_damaging(0.829) TCGA-06-5416-01 8 22108234 22108234 C T POLR3D 3'UTR 0.50 TCGA-06-5416-01 8 22167573 22167573 C A PIWIL2 Missense_Mutation p.P596T 0.07 tolerated(0.44) benign(0.007) TCGA-06-5416-01 8 22412436 22412436 C T SORBS3 Missense_Mutation p.P55S 0.21 tolerated(0.11) probably_damaging(0.997) TCGA-06-5416-01 8 22414370 22414370 C T SORBS3 Silent p.Y121Y 0.47 TCGA-06-5416-01 8 22429296 22429296 G A SORBS3 Silent p.G603G 0.38 TCGA-06-5416-01 8 22465575 22465575 G A CCAR2 Missense_Mutation p.R194Q 0.25 deleterious(0.01) possibly_damaging(0.811) TCGA-06-5416-01 8 22472440 22472440 G A CCAR2 Silent p.P377P 0.36 TCGA-06-5416-01 8 22473344 22473344 C T CCAR2 Silent p.V509V 0.23 TCGA-06-5416-01 8 22548284 22548284 G A EGR3 Missense_Mutation p.S289L 0.49 deleterious(0) probably_damaging(0.922) TCGA-06-5416-01 8 22548696 22548696 C T EGR3 Missense_Mutation p.D152N 0.52 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 8 22874796 22874796 G A RHOBTB2 Nonsense_Mutation p.W688* 0.46 TCGA-06-5416-01 8 22974669 22974669 G A TNFRSF10C 3'UTR 0.54 TCGA-06-5416-01 8 23069652 23069652 G T TNFRSF10A Missense_Mutation p.P127H 0.20 tolerated(0.21) benign(0.407) TCGA-06-5416-01 8 23118063 23118063 G T CHMP7 Missense_Mutation p.S438I 0.41 tolerated_low_confidence(0.07) benign(0.094) TCGA-06-5416-01 8 23198656 23198656 G A LOXL2 Missense_Mutation p.R198C 0.43 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 8 23225529 23225529 G A LOXL2 Silent p.S112S 0.18 TCGA-06-5416-01 8 23225803 23225803 G A LOXL2 Missense_Mutation p.P21L 0.19 tolerated_low_confidence(0.35) benign(0.002) TCGA-06-5416-01 8 23423702 23423702 G A SLC25A37 Missense_Mutation p.E98K 0.41 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 8 23429253 23429253 G T SLC25A37 Missense_Mutation p.G301V 0.34 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 23702260 23702260 G A STC1 3'UTR 0.29 TCGA-06-5416-01 8 24184088 24184088 G A ADAM28 Silent p.T304T 0.43 TCGA-06-5416-01 8 24257717 24257717 T C ADAMDEC1 Missense_Mutation p.V349A 0.44 deleterious(0.03) possibly_damaging(0.747) TCGA-06-5416-01 8 24350605 24350605 C A ADAM7 Missense_Mutation p.L569I 0.21 tolerated(0.2) benign(0.023) TCGA-06-5416-01 8 24771600 24771600 C T NEFM Silent p.R98R 0.49 TCGA-06-5416-01 8 24775251 24775251 C A NEFM Missense_Mutation p.S628Y 0.19 deleterious(0) benign(0.438) TCGA-06-5416-01 8 25191625 25191625 C A DOCK5 Nonsense_Mutation p.S702* 0.16 TCGA-06-5416-01 8 25198439 25198439 C T DOCK5 Missense_Mutation p.R792C 0.18 deleterious(0.01) possibly_damaging(0.899) TCGA-06-5416-01 8 25280848 25280848 C A GNRH1 5'UTR 0.14 TCGA-06-5416-01 8 25296875 25296875 C T KCTD9 Missense_Mutation p.R140Q 0.41 deleterious(0.02) benign(0.042) TCGA-06-5416-01 8 25315836 25315836 C T KCTD9 5'UTR 0.25 TCGA-06-5416-01 8 25718576 25718576 C T EBF2 Missense_Mutation p.G444E 0.44 deleterious(0.01) benign(0.01) TCGA-06-5416-01 8 26212011 26212011 G T PPP2R2A Nonsense_Mutation p.E80* 0.41 TCGA-06-5416-01 8 26221300 26221300 C T PPP2R2A Missense_Mutation p.S299L 0.49 deleterious(0) probably_damaging(0.944) TCGA-06-5416-01 8 26237094 26237094 C T BNIP3L 5'Flank 0.45 TCGA-06-5416-01 8 26237216 26237216 G A BNIP3L 5'Flank 0.22 TCGA-06-5416-01 8 26237757 26237757 G T BNIP3L 5'Flank 0.16 TCGA-06-5416-01 8 26366468 26366468 G T PNMA2 5'UTR 0.33 TCGA-06-5416-01 8 26441421 26441421 C T DPYSL2 Missense_Mutation p.P79S 0.49 tolerated(0.06) possibly_damaging(0.447) TCGA-06-5416-01 8 26623536 26623536 G A ADRA1A Intron 0.22 TCGA-06-5416-01 8 26627771 26627771 G T ADRA1A Intron 0.20 TCGA-06-5416-01 8 27099205 27099205 C A STMN4 Missense_Mutation p.R60I 0.15 tolerated_low_confidence(0.07) unknown(0) TCGA-06-5416-01 8 27255101 27255101 G A PTK2B 5'UTR 0.13 TCGA-06-5416-01 8 27279829 27279829 C T PTK2B Silent p.N160N 0.28 TCGA-06-5416-01 8 27320982 27320982 C T CHRNA2 Silent p.P326P 0.18 TCGA-06-5416-01 8 27321404 27321404 C T CHRNA2 Missense_Mutation p.D186N 0.17 tolerated(0.09) probably_damaging(1) TCGA-06-5416-01 8 27361218 27361218 C T EPHX2 Missense_Mutation p.A95V 0.21 tolerated(0.46) possibly_damaging(0.645) TCGA-06-5416-01 8 27401318 27401318 C A EPHX2 Missense_Mutation p.P501H 0.43 deleterious(0) benign(0.086) TCGA-06-5416-01 8 27457482 27457482 G A CLU Missense_Mutation p.L327F 0.19 tolerated(0.29) possibly_damaging(0.794) TCGA-06-5416-01 8 27463931 27463931 C A CLU Missense_Mutation p.Q119H 0.45 tolerated(0.31) benign(0.133) TCGA-06-5416-01 8 27667920 27667920 G T PBK Missense_Mutation p.Q291K 0.22 deleterious(0.03) possibly_damaging(0.472) TCGA-06-5416-01 8 27886860 27886860 C A NUGGC Nonsense_Mutation p.G693* 0.19 TCGA-06-5416-01 8 28047303 28047303 T G ELP3 3'UTR 0.48 TCGA-06-5416-01 8 28378297 28378297 C T FZD3 Missense_Mutation p.S111L 0.41 tolerated(0.1) benign(0.005) TCGA-06-5416-01 8 28385479 28385479 G A FZD3 Missense_Mutation p.R401Q 0.20 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 8 28385565 28385565 G A FZD3 Missense_Mutation p.V430I 0.44 tolerated(0.07) benign(0.116) TCGA-06-5416-01 8 28574415 28574415 G A EXTL3 Missense_Mutation p.R280H 0.37 tolerated(0.13) benign(0.135) TCGA-06-5416-01 8 28575010 28575010 G T EXTL3 Missense_Mutation p.W478C 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 28588787 28588787 G A EXTL3 Nonsense_Mutation p.W732* 0.42 TCGA-06-5416-01 8 28588840 28588840 G A EXTL3 Missense_Mutation p.R750H 0.47 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 8 28876279 28876279 G A HMBOX1 Missense_Mutation p.A234T 0.23 deleterious(0.01) probably_damaging(0.95) TCGA-06-5416-01 8 28908626 28908626 G A HMBOX1 Missense_Mutation p.R406Q 0.47 tolerated(0.11) benign(0.044) TCGA-06-5416-01 8 29007901 29007901 C A KIF13B Splice_Site p.X512_splice 0.36 TCGA-06-5416-01 8 29025018 29025018 G T KIF13B Missense_Mutation p.L344M 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 29195909 29195909 G A DUSP4 Missense_Mutation p.S230L 0.57 tolerated(0.1) benign(0.005) TCGA-06-5416-01 8 30210525 30210525 G A TUBBP1 RNA 0.18 TCGA-06-5416-01 8 30210700 30210700 G A TUBBP1 RNA 0.44 TCGA-06-5416-01 8 30210831 30210831 C T TUBBP1 RNA 0.45 TCGA-06-5416-01 8 30537042 30537042 G A GSR Missense_Mutation p.R522C 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 30608943 30608943 G A UBXN8 RNA 0.14 TCGA-06-5416-01 8 30655136 30655136 G T PPP2CB Silent p.L149L 0.17 TCGA-06-5416-01 8 30695312 30695312 T G TEX15 Missense_Mutation p.T2447P 0.19 deleterious(0.04) probably_damaging(0.931) TCGA-06-5416-01 8 30700451 30700451 T G TEX15 Missense_Mutation p.N2028T 0.14 deleterious(0.01) benign(0.02) TCGA-06-5416-01 8 30702492 30702492 C T TEX15 Missense_Mutation p.E1348K 0.20 tolerated(0.15) benign(0.232) TCGA-06-5416-01 8 30702516 30702516 C T TEX15 Missense_Mutation p.A1340T 0.20 tolerated(1) benign(0.002) TCGA-06-5416-01 8 30702745 30702745 T G TEX15 Missense_Mutation p.K1263N 0.23 tolerated(0.36) possibly_damaging(0.643) TCGA-06-5416-01 8 30703578 30703578 A G TEX15 Missense_Mutation p.S986P 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 8 31012204 31012204 A C WRN Missense_Mutation p.K1251T 0.44 tolerated(0.41) benign(0.005) TCGA-06-5416-01 8 3141850 3141850 G A CSMD1 Silent p.F1323F 0.22 TCGA-06-5416-01 8 3205525 3205525 C T CSMD1 Missense_Mutation p.D1155N 0.58 probably_damaging(0.999) TCGA-06-5416-01 8 32505785 32505785 C A NRG1 Intron 0.21 TCGA-06-5416-01 8 32613952 32613952 C T NRG1 Missense_Mutation p.R284W 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 8 32620825 32620825 C A NRG1 Intron 0.43 TCGA-06-5416-01 8 32621514 32621514 C T NRG1 Missense_Mutation p.A511V 0.14 tolerated(0.25) benign(0.012) TCGA-06-5416-01 8 32621677 32621677 G T NRG1 Missense_Mutation p.L565F 0.16 tolerated(0.69) possibly_damaging(0.522) TCGA-06-5416-01 8 33361317 33361317 C T TTI2 Missense_Mutation p.R355H 0.51 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 8 33370075 33370075 C A TTI2 Missense_Mutation p.E19D 0.42 tolerated_low_confidence(0.21) benign(0.007) TCGA-06-5416-01 8 35606121 35606121 C T UNC5D Missense_Mutation p.P615S 0.21 deleterious(0.01) possibly_damaging(0.822) TCGA-06-5416-01 8 36703414 36703414 A G KCNU1 Missense_Mutation p.T630A 0.19 tolerated(0.82) benign(0.002) TCGA-06-5416-01 8 37729244 37729244 C A RAB11FIP1 Missense_Mutation p.G1026C 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.847) TCGA-06-5416-01 8 37734840 37734840 C T RAB11FIP1 Missense_Mutation p.D201N 0.39 deleterious(0.02) probably_damaging(0.992) TCGA-06-5416-01 8 37756947 37756947 C T RAB11FIP1 Missense_Mutation p.V5I 0.43 deleterious(0) benign(0.001) TCGA-06-5416-01 8 37791801 37791801 T A GOT1L1 3'UTR 0.18 TCGA-06-5416-01 8 38005786 38005786 C T STAR Missense_Mutation p.E80K 0.16 tolerated(0.1) benign(0.117) TCGA-06-5416-01 8 38050249 38050249 C T BAG4 Missense_Mutation p.S105F 0.45 deleterious(0.01) possibly_damaging(0.83) TCGA-06-5416-01 8 38146112 38146112 C A WHSC1L1 Missense_Mutation p.D1132Y 0.45 deleterious(0) probably_damaging(0.929) TCGA-06-5416-01 8 38146216 38146216 C T WHSC1L1 Missense_Mutation p.R1097H 0.47 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 8 38162791 38162791 C A WHSC1L1 Missense_Mutation p.E805D 0.18 tolerated(0.71) benign(0.006) TCGA-06-5416-01 8 38187103 38187103 C T WHSC1L1 Silent p.A458A 0.17 TCGA-06-5416-01 8 38272306 38272306 C A FGFR1 Missense_Mutation p.K687N 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 38677161 38677161 G T TACC1 Missense_Mutation p.K133N 0.47 tolerated(0.06) benign(0.258) TCGA-06-5416-01 8 38808466 38808466 G A PLEKHA2 Silent p.T148T 0.21 TCGA-06-5416-01 8 38840538 38840538 T C HTRA4 Silent p.C413C 0.20 TCGA-06-5416-01 8 38961144 38961144 G A ADAM9 Silent p.P795P 0.20 TCGA-06-5416-01 8 39079160 39079160 G A ADAM32 Missense_Mutation p.R422Q 0.45 tolerated(0.59) benign(0.012) TCGA-06-5416-01 8 39496041 39496041 A C ADAM18 Missense_Mutation p.K295N 0.20 tolerated(0.09) benign(0.014) TCGA-06-5416-01 8 39496044 39496044 C A ADAM18 Missense_Mutation p.S296R 0.36 deleterious(0.04) possibly_damaging(0.696) TCGA-06-5416-01 8 39606895 39606895 T C ADAM2 Silent p.L650L 0.22 TCGA-06-5416-01 8 39792512 39792512 G T IDO2 5'UTR 0.31 TCGA-06-5416-01 8 39871230 39871230 G A IDO2 Missense_Mutation p.S302N 0.27 deleterious(0.04) benign(0.105) TCGA-06-5416-01 8 40011246 40011246 G T C8orf4 Missense_Mutation p.K65N 0.39 tolerated(0.14) benign(0.177) TCGA-06-5416-01 8 40011262 40011262 G T C8orf4 Missense_Mutation p.D71Y 0.36 tolerated(0.32) probably_damaging(0.998) TCGA-06-5416-01 8 40532330 40532330 G A ZMAT4 Missense_Mutation p.P157L 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 41467274 41467274 C A AGPAT6 Silent p.L112L 0.23 TCGA-06-5416-01 8 41550651 41550651 C T ANK1 Missense_Mutation p.A1242T 0.17 deleterious(0.01) probably_damaging(0.984) TCGA-06-5416-01 8 41559625 41559625 C A ANK1 Missense_Mutation p.G811V 0.17 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 8 41563673 41563673 G A ANK1 Silent p.D728D 0.34 TCGA-06-5416-01 8 41566470 41566470 G A ANK1 Silent p.I641I 0.21 TCGA-06-5416-01 8 41577301 41577301 C T ANK1 Missense_Mutation p.A362T 0.19 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 8 41753951 41753951 C T ANK1 Silent p.A16A 0.41 TCGA-06-5416-01 8 41791516 41791516 C T KAT6A Missense_Mutation p.E1408K 0.39 unknown(0) TCGA-06-5416-01 8 41906516 41906516 C A KAT6A 5'UTR 0.42 TCGA-06-5416-01 8 42162729 42162729 A C IKBKB Missense_Mutation p.E138A 0.48 deleterious(0.05) possibly_damaging(0.472) TCGA-06-5416-01 8 42179974 42179974 C T IKBKB Missense_Mutation p.R650W 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 42183610 42183610 G T IKBKB Missense_Mutation p.K703N 0.34 tolerated(0.14) benign(0.031) TCGA-06-5416-01 8 42295031 42295031 G A SLC20A2 Silent p.F333F 0.23 TCGA-06-5416-01 8 42302222 42302222 G A SLC20A2 Silent p.L224L 0.51 TCGA-06-5416-01 8 42401739 42401739 T C SMIM19 Missense_Mutation p.Y42H 0.43 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-06-5416-01 8 42587514 42587514 G A CHRNB3 Missense_Mutation p.R355H 0.21 deleterious(0.04) benign(0.032) TCGA-06-5416-01 8 42611780 42611780 G A CHRNA6 Missense_Mutation p.L188F 0.06 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 42612120 42612120 G A CHRNA6 Missense_Mutation p.R109C 0.44 deleterious(0.01) probably_damaging(0.98) TCGA-06-5416-01 8 42612125 42612125 G A CHRNA6 Missense_Mutation p.T107I 0.22 tolerated(0.41) benign(0.016) TCGA-06-5416-01 8 42927358 42927358 G T FNTA Missense_Mutation p.D181Y 0.22 deleterious(0) possibly_damaging(0.881) TCGA-06-5416-01 8 42958728 42958728 G A POMK Missense_Mutation p.A13T 0.42 tolerated_low_confidence(0.65) benign(0) TCGA-06-5416-01 8 442539 442539 C T TDRP Missense_Mutation p.A140T 0.44 tolerated_low_confidence(0.87) benign(0.014) TCGA-06-5416-01 8 4851989 4851989 G A CSMD1 5'Flank 0.19 TCGA-06-5416-01 8 48641984 48641984 G A SPIDR Missense_Mutation p.R854H 0.25 tolerated(0.14) benign(0.002) TCGA-06-5416-01 8 48694996 48694996 G A PRKDC Missense_Mutation p.A3779V 0.40 possibly_damaging(0.69) TCGA-06-5416-01 8 48743228 48743228 C A PRKDC Missense_Mutation p.D2778Y 0.43 probably_damaging(0.997) TCGA-06-5416-01 8 48751788 48751788 C A PRKDC Missense_Mutation p.D2491Y 0.24 probably_damaging(0.959) TCGA-06-5416-01 8 48887453 48887453 C T MCM4 Missense_Mutation p.R766W 0.42 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 8 51571223 51571223 G T SNTG1 Missense_Mutation p.K346N 0.20 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 8 51664601 51664601 C A SNTG1 Missense_Mutation p.S442Y 0.21 deleterious(0) possibly_damaging(0.895) TCGA-06-5416-01 8 52321017 52321017 C T PXDNL Missense_Mutation p.G1056D 0.14 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 52321502 52321502 G A PXDNL Silent p.I894I 0.43 TCGA-06-5416-01 8 52339212 52339212 C T PXDNL Nonsense_Mutation p.W544* 0.43 TCGA-06-5416-01 8 52370198 52370198 C T PXDNL Missense_Mutation p.R281Q 0.21 deleterious(0.02) probably_damaging(0.995) TCGA-06-5416-01 8 52746176 52746176 G A PCMTD1 Nonsense_Mutation p.R162* 0.19 TCGA-06-5416-01 8 52758229 52758229 G A PCMTD1 Silent p.S134S 0.37 TCGA-06-5416-01 8 53126791 53126791 C T ST18 Silent p.T9T 0.18 TCGA-06-5416-01 8 53548594 53548594 C T RB1CC1 Missense_Mutation p.R1458Q 0.48 deleterious(0.01) possibly_damaging(0.621) TCGA-06-5416-01 8 53548628 53548628 C T RB1CC1 Missense_Mutation p.E1447K 0.24 deleterious(0.03) benign(0.004) TCGA-06-5416-01 8 53555119 53555119 G A RB1CC1 Missense_Mutation p.R1377C 0.47 tolerated(0.05) possibly_damaging(0.553) TCGA-06-5416-01 8 53852721 53852721 T G NPBWR1 Missense_Mutation p.L85R 0.53 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 54745568 54745568 C A ATP6V1H Missense_Mutation p.E64D 0.15 tolerated(0.44) benign(0.004) TCGA-06-5416-01 8 54891622 54891622 C T TCEA1 Missense_Mutation p.C263Y 0.27 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 54923037 54923037 A C TCEA1 Missense_Mutation p.L27V 0.20 tolerated(0.05) possibly_damaging(0.812) TCGA-06-5416-01 8 55537407 55537407 C T RP1 Missense_Mutation p.S322L 0.20 deleterious(0) probably_damaging(0.911) TCGA-06-5416-01 8 55538466 55538466 A T RP1 Missense_Mutation p.K675I 0.18 deleterious(0.03) benign(0.141) TCGA-06-5416-01 8 55540419 55540419 C T RP1 Missense_Mutation p.A1326V 0.43 tolerated(0.06) possibly_damaging(0.642) TCGA-06-5416-01 8 55540789 55540789 C T RP1 Silent p.G1449G 0.16 TCGA-06-5416-01 8 56699307 56699307 G A TGS1 Missense_Mutation p.D284N 0.48 tolerated(0.29) benign(0.015) TCGA-06-5416-01 8 56864652 56864652 C T LYN Silent p.S205S 0.21 TCGA-06-5416-01 8 57025785 57025785 C T MOS Missense_Mutation p.G253R 0.06 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 57025981 57025981 G A MOS Silent p.N187N 0.34 TCGA-06-5416-01 8 57218222 57218222 G A SDR16C5 Missense_Mutation p.A257V 0.41 deleterious(0) probably_damaging(0.914) TCGA-06-5416-01 8 57224781 57224781 A G SDR16C5 Missense_Mutation p.F134L 0.07 tolerated(0.11) probably_damaging(0.997) TCGA-06-5416-01 8 57892657 57892657 C A IMPAD1 Nonsense_Mutation p.E163* 0.30 TCGA-06-5416-01 8 59058892 59058892 G T FAM110B Missense_Mutation p.D35Y 0.88 deleterious(0.01) probably_damaging(0.93) TCGA-06-5416-01 8 59403991 59403991 G T CYP7A1 3'UTR 0.92 TCGA-06-5416-01 8 59728228 59728228 G A TOX Missense_Mutation p.S354L 0.47 deleterious(0.01) benign(0.053) TCGA-06-5416-01 8 61193682 61193682 C A CA8 Missense_Mutation p.D9Y 0.69 deleterious_low_confidence(0) benign(0.107) TCGA-06-5416-01 8 61531189 61531189 C A RAB2A Silent p.V175V 0.78 TCGA-06-5416-01 8 61655399 61655399 G A CHD7 Missense_Mutation p.E470K 0.38 unknown(0) TCGA-06-5416-01 8 62289186 62289186 C T CLVS1 Missense_Mutation p.R160C 0.34 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 8 62559366 62559366 T C ASPH Missense_Mutation p.M188V 0.38 tolerated_low_confidence(0.32) benign(0.004) TCGA-06-5416-01 8 62563660 62563660 C A ASPH Missense_Mutation p.A147S 0.06 tolerated_low_confidence(0.39) benign(0.103) TCGA-06-5416-01 8 6302874 6302874 C A MCPH1 Missense_Mutation p.P544H 0.51 deleterious(0.04) possibly_damaging(0.494) TCGA-06-5416-01 8 6302929 6302929 G T MCPH1 Missense_Mutation p.Q562H 0.40 deleterious(0.01) possibly_damaging(0.471) TCGA-06-5416-01 8 63927912 63927912 C T GGH Silent p.Q312Q 0.47 TCGA-06-5416-01 8 64099263 64099263 G T YTHDF3 Missense_Mutation p.A231S 0.19 tolerated(0.32) possibly_damaging(0.545) TCGA-06-5416-01 8 65528738 65528738 C A CYP7B1 Missense_Mutation p.E120D 0.19 tolerated(0.5) benign(0.109) TCGA-06-5416-01 8 66516512 66516512 C T ARMC1 3'UTR 0.29 TCGA-06-5416-01 8 66525484 66525484 C A ARMC1 Missense_Mutation p.D154Y 0.12 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 8 66635812 66635812 C T PDE7A Missense_Mutation p.D403N 0.25 tolerated(0.28) probably_damaging(0.998) TCGA-06-5416-01 8 66647076 66647076 C T PDE7A Missense_Mutation p.A217T 0.12 deleterious(0) possibly_damaging(0.884) TCGA-06-5416-01 8 66989039 66989039 C A DNAJC5B Silent p.L88L 0.20 TCGA-06-5416-01 8 66992750 66992750 C T DNAJC5B Silent p.L158L 0.25 TCGA-06-5416-01 8 67012287 67012287 C A DNAJC5B 3'UTR 0.35 TCGA-06-5416-01 8 67039461 67039461 C T TRIM55 5'UTR 0.42 TCGA-06-5416-01 8 67492598 67492598 G A MYBL1 Missense_Mutation p.P291S 0.47 tolerated(0.54) benign(0.01) TCGA-06-5416-01 8 67577216 67577216 G T VCPIP1 Missense_Mutation p.P660T 0.21 deleterious(0) benign(0.035) TCGA-06-5416-01 8 67577947 67577947 G T VCPIP1 Missense_Mutation p.A416D 0.25 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 8 67786588 67786588 G A MCMDC2 Missense_Mutation p.R41Q 0.41 deleterious(0.01) probably_damaging(0.997) TCGA-06-5416-01 8 67925225 67925225 G T PPP1R42 Missense_Mutation p.L135M 0.19 deleterious(0) possibly_damaging(0.771) TCGA-06-5416-01 8 68015299 68015299 G A CSPP1 Missense_Mutation p.M326I 0.22 tolerated(0.2) benign(0.003) TCGA-06-5416-01 8 68070693 68070693 G T CSPP1 Missense_Mutation p.K746N 0.30 tolerated(0.08) probably_damaging(0.999) TCGA-06-5416-01 8 68071277 68071277 G T CSPP1 Nonsense_Mutation p.E810* 0.21 TCGA-06-5416-01 8 68138293 68138293 G A ARFGEF1 Missense_Mutation p.R1348C 0.13 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 8 68139474 68139474 G A ARFGEF1 Nonsense_Mutation p.R1272* 0.42 TCGA-06-5416-01 8 68170366 68170366 G A ARFGEF1 Nonsense_Mutation p.R799* 0.23 TCGA-06-5416-01 8 68208743 68208743 G T ARFGEF1 Missense_Mutation p.L188I 0.20 tolerated(0.12) possibly_damaging(0.459) TCGA-06-5416-01 8 68211462 68211462 A G ARFGEF1 Silent p.V147V 0.28 TCGA-06-5416-01 8 68396941 68396941 G A CPA6 Silent p.V240V 0.22 TCGA-06-5416-01 8 68939555 68939555 G A PREX2 Silent p.L180L 0.25 TCGA-06-5416-01 8 68992692 68992692 G A PREX2 Missense_Mutation p.E553K 0.23 tolerated(0.05) possibly_damaging(0.615) TCGA-06-5416-01 8 68995495 68995496 - A PREX2 Frame_Shift_Ins p.I636Dfs*5 0.20 TCGA-06-5416-01 8 69020545 69020545 G T PREX2 Nonsense_Mutation p.E973* 0.40 TCGA-06-5416-01 8 69046470 69046470 G T PREX2 Missense_Mutation p.G1315C 0.17 deleterious(0) possibly_damaging(0.87) TCGA-06-5416-01 8 70513947 70513947 C T SULF1 Missense_Mutation p.A315V 0.21 tolerated(0.06) possibly_damaging(0.827) TCGA-06-5416-01 8 70550835 70550835 A G SULF1 Missense_Mutation p.T795A 0.41 deleterious(0) possibly_damaging(0.885) TCGA-06-5416-01 8 70553071 70553071 A G SULF1 Silent p.L860L 0.21 TCGA-06-5416-01 8 70585410 70585410 G A SLCO5A1 Silent p.F747F 0.45 TCGA-06-5416-01 8 70617383 70617383 T C SLCO5A1 Missense_Mutation p.E502G 0.22 tolerated(0.41) benign(0.007) TCGA-06-5416-01 8 70674055 70674055 T C SLCO5A1 Silent p.G321G 0.50 TCGA-06-5416-01 8 70744001 70744001 C T SLCO5A1 Splice_Site p.X303_splice 0.44 TCGA-06-5416-01 8 70744534 70744534 C T SLCO5A1 Silent p.T125T 0.48 TCGA-06-5416-01 8 71037010 71037010 G A NCOA2 Missense_Mutation p.P1336L 0.21 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 8 71495413 71495413 G T TRAM1 Missense_Mutation p.S346Y 0.36 tolerated(0.05) benign(0.323) TCGA-06-5416-01 8 71510138 71510138 G T TRAM1 Missense_Mutation p.L140I 0.24 tolerated(0.37) benign(0.436) TCGA-06-5416-01 8 71593291 71593291 G A XKR9 5'UTR 0.16 TCGA-06-5416-01 8 72756413 72756413 T C MSC Translation_Start_Site p.M1? 0.19 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 8 72935140 72935140 G A TRPA1 3'UTR 0.86 TCGA-06-5416-01 8 72975068 72975068 C T TRPA1 Missense_Mutation p.C258Y 0.40 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 7308233 7308233 T G SPAG11B 3'UTR 0.40 TCGA-06-5416-01 8 74585424 74585424 G T STAU2 Missense_Mutation p.P110T 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 8 75756324 75756324 C T PI15 Missense_Mutation p.R128C 0.36 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 8 7673141 7673141 C T DEFB107A Missense_Mutation p.A4T 0.12 tolerated_low_confidence(0.11) possibly_damaging(0.483) TCGA-06-5416-01 8 77766305 77766305 C A ZFHX4 Missense_Mutation p.S2383Y 0.40 probably_damaging(0.989) TCGA-06-5416-01 8 77767246 77767246 C T ZFHX4 Missense_Mutation p.R2697W 0.40 probably_damaging(0.995) TCGA-06-5416-01 8 77768323 77768323 C T ZFHX4 Missense_Mutation p.R3056W 0.36 probably_damaging(0.973) TCGA-06-5416-01 8 77895688 77895688 C A PEX2 Nonsense_Mutation p.E243* 0.42 TCGA-06-5416-01 8 79652252 79652252 G T IL7 Silent p.I71I 0.33 TCGA-06-5416-01 8 80963832 80963832 C T TPD52 Missense_Mutation p.A146T 0.40 deleterious(0) probably_damaging(0.911) TCGA-06-5416-01 8 81412123 81412123 G A ZBTB10 Missense_Mutation p.R456Q 0.22 deleterious(0.01) possibly_damaging(0.642) TCGA-06-5416-01 8 8235408 8235408 C T SGK223 Missense_Mutation p.G171S 0.22 benign(0.349) TCGA-06-5416-01 8 82370633 82370633 G A FABP9 Silent p.I128I 0.18 TCGA-06-5416-01 8 82645049 82645049 G A CHMP4C Missense_Mutation p.R63Q 0.36 deleterious(0.01) possibly_damaging(0.473) TCGA-06-5416-01 8 82665437 82665437 G A CHMP4C Missense_Mutation p.G110D 0.26 tolerated(0.15) benign(0.118) TCGA-06-5416-01 8 82670519 82670519 G A CHMP4C Missense_Mutation p.R209Q 0.30 tolerated(0.53) benign(0.009) TCGA-06-5416-01 8 8560092 8560092 G A CLDN23 Missense_Mutation p.E62K 0.42 tolerated(0.68) benign(0.269) TCGA-06-5416-01 8 85785593 85785593 C T RALYL Missense_Mutation p.R229C 0.47 deleterious(0) probably_damaging(0.975) TCGA-06-5416-01 8 86193627 86193627 A C CA13 3'UTR 0.17 TCGA-06-5416-01 8 86240893 86240893 G A CA1 Missense_Mutation p.R228C 0.21 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 8 86354308 86354308 G T CA3 Missense_Mutation p.R80I 0.19 tolerated(0.1) possibly_damaging(0.726) TCGA-06-5416-01 8 87242095 87242095 C T SLC7A13 Missense_Mutation p.A138T 0.13 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 8 87464830 87464830 G A WWP1 Silent p.Q772Q 0.49 TCGA-06-5416-01 8 8747785 8747785 A G MFHAS1 Silent p.S928S 0.20 TCGA-06-5416-01 8 8748418 8748418 C A MFHAS1 Missense_Mutation p.E717D 0.19 tolerated(0.21) probably_damaging(0.978) TCGA-06-5416-01 8 8748500 8748500 C T MFHAS1 Missense_Mutation p.G690D 0.38 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 8 8748752 8748752 C T MFHAS1 Missense_Mutation p.R606H 0.15 deleterious(0.01) possibly_damaging(0.67) TCGA-06-5416-01 8 8748873 8748873 C T MFHAS1 Missense_Mutation p.A566T 0.23 tolerated(0.67) benign(0.006) TCGA-06-5416-01 8 8748922 8748922 C A MFHAS1 Missense_Mutation p.E549D 0.23 tolerated(0.18) probably_damaging(0.978) TCGA-06-5416-01 8 87552517 87552517 C A CPNE3 Silent p.I196I 0.06 TCGA-06-5416-01 8 87568461 87568461 C T CPNE3 Silent p.S462S 0.46 TCGA-06-5416-01 8 88885456 88885456 G T DCAF4L2 Silent p.I248I 0.43 TCGA-06-5416-01 8 88885903 88885903 G A DCAF4L2 Silent p.Y99Y 0.20 TCGA-06-5416-01 8 90926845 90926845 C T OSGIN2 Silent p.F133F 0.15 TCGA-06-5416-01 8 90937709 90937709 G T OSGIN2 Missense_Mutation p.Q533H 0.13 tolerated(0.13) possibly_damaging(0.77) TCGA-06-5416-01 8 91033251 91033251 G T DECR1 Nonsense_Mutation p.E178* 0.16 TCGA-06-5416-01 8 91094299 91094299 C A CALB1 Missense_Mutation p.Q37H 0.14 tolerated(0.08) possibly_damaging(0.71) TCGA-06-5416-01 8 91094944 91094944 T C CALB1 5'UTR 0.18 TCGA-06-5416-01 8 91929753 91929753 G A NECAB1 Missense_Mutation p.V131I 0.30 deleterious(0.03) probably_damaging(0.979) TCGA-06-5416-01 8 91953095 91953095 G T NECAB1 Nonsense_Mutation p.E277* 0.56 TCGA-06-5416-01 8 92346578 92346578 T C SLC26A7 Missense_Mutation p.L233S 0.31 deleterious(0) possibly_damaging(0.736) TCGA-06-5416-01 8 93017356 93017356 C T RUNX1T1 Missense_Mutation p.R254Q 0.13 deleterious(0.03) benign(0.185) TCGA-06-5416-01 8 93017482 93017482 C T RUNX1T1 Missense_Mutation p.R212K 0.64 deleterious(0.01) possibly_damaging(0.627) TCGA-06-5416-01 8 94722039 94722039 G A FAM92A1 Missense_Mutation p.R160Q 0.12 deleterious(0.03) probably_damaging(0.995) TCGA-06-5416-01 8 94746818 94746818 C T RBM12B Silent p.P607P 0.25 TCGA-06-5416-01 8 94747251 94747251 C T RBM12B Missense_Mutation p.R463Q 0.20 tolerated(0.4) benign(0.225) TCGA-06-5416-01 8 94748189 94748189 C T RBM12B Silent p.L150L 0.14 TCGA-06-5416-01 8 94748594 94748594 C A RBM12B Silent p.G15G 0.14 TCGA-06-5416-01 8 94792886 94792886 C T TMEM67 Silent p.Y260Y 0.15 TCGA-06-5416-01 8 94803492 94803492 T C TMEM67 Missense_Mutation p.V507A 0.16 tolerated(0.13) benign(0.06) TCGA-06-5416-01 8 94809604 94809604 G T TMEM67 Missense_Mutation p.R669I 0.10 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 94809679 94809679 C T TMEM67 Missense_Mutation p.T694I 0.16 deleterious(0.04) benign(0.01) TCGA-06-5416-01 8 94935084 94935084 G A PDP1 Missense_Mutation p.R291Q 0.37 tolerated(1) benign(0.405) TCGA-06-5416-01 8 94935676 94935676 A C PDP1 Silent p.T488T 0.13 TCGA-06-5416-01 8 95142949 95142949 A G CDH17 Missense_Mutation p.V768A 0.11 tolerated(0.29) benign(0.009) TCGA-06-5416-01 8 95174335 95174335 G T CDH17 Silent p.I446I 0.27 TCGA-06-5416-01 8 95188825 95188825 C T CDH17 Missense_Mutation p.R123Q 0.15 tolerated(0.35) benign(0.109) TCGA-06-5416-01 8 95262705 95262705 G A GEM Missense_Mutation p.R242W 0.15 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 8 95262740 95262740 T A GEM Missense_Mutation p.E230V 0.32 deleterious(0) probably_damaging(0.916) TCGA-06-5416-01 8 95264375 95264375 C T GEM Missense_Mutation p.R162Q 0.31 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 8 95272535 95272535 A G GEM Missense_Mutation p.V66A 0.17 tolerated(0.96) benign(0.012) TCGA-06-5416-01 8 95500960 95500960 G A KIAA1429 Missense_Mutation p.R1805C 0.32 deleterious(0) possibly_damaging(0.835) TCGA-06-5416-01 8 95500995 95500995 C T KIAA1429 Missense_Mutation p.R1793K 0.17 tolerated(0.4) benign(0.14) TCGA-06-5416-01 8 95507989 95507989 G T KIAA1429 Missense_Mutation p.P1505Q 0.12 deleterious(0) probably_damaging(0.964) TCGA-06-5416-01 8 95531282 95531282 A G KIAA1429 Missense_Mutation p.V815A 0.16 deleterious(0.01) possibly_damaging(0.793) TCGA-06-5416-01 8 95538769 95538769 C T KIAA1429 Missense_Mutation p.R568K 0.30 tolerated(1) benign(0.002) TCGA-06-5416-01 8 95556133 95556133 A G KIAA1429 Missense_Mutation p.V34A 0.30 tolerated(1) benign(0.276) TCGA-06-5416-01 8 95677276 95677276 C T ESRP1 Missense_Mutation p.R293W 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 95690488 95690488 C A ESRP1 Missense_Mutation p.A570D 0.20 deleterious(0.02) possibly_damaging(0.883) TCGA-06-5416-01 8 95893759 95893759 C T CCNE2 3'UTR 0.12 TCGA-06-5416-01 8 9599275 9599275 G T TNKS Intron 0.28 TCGA-06-5416-01 8 97270727 97270727 G T MTERFD1 Silent p.S64S 0.06 TCGA-06-5416-01 8 97316341 97316341 C T PTDSS1 Nonsense_Mutation p.R276* 0.47 TCGA-06-5416-01 8 97621772 97621772 C T SDC2 Missense_Mutation p.A201V 0.44 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 8 98656840 98656840 C T MTDH Silent p.L36L 0.24 TCGA-06-5416-01 8 98657012 98657012 C T MTDH Missense_Mutation p.A93V 0.56 tolerated(0.21) benign(0.001) TCGA-06-5416-01 8 99039711 99039711 T A MATN2 Missense_Mutation p.N670K 0.17 deleterious(0.01) possibly_damaging(0.895) TCGA-06-5416-01 8 99045336 99045336 G T MATN2 Missense_Mutation p.R883I 0.47 deleterious(0) benign(0.028) TCGA-06-5416-01 8 99054057 99054057 C T RPL30 Missense_Mutation p.S107N 0.18 tolerated(0.07) benign(0.015) TCGA-06-5416-01 8 99105636 99105636 T C C8orf47 3'UTR 0.24 TCGA-06-5416-01 8 99142350 99142350 C T POP1 Missense_Mutation p.R211W 0.45 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 99264736 99264736 C T NIPAL2 Missense_Mutation p.A111T 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 99440397 99440397 G A KCNS2 Missense_Mutation p.D64N 0.14 tolerated(0.29) probably_damaging(0.996) TCGA-06-5416-01 8 99440874 99440874 G A KCNS2 Missense_Mutation p.E223K 0.21 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 8 99441587 99441587 G A KCNS2 Silent p.T460T 0.44 TCGA-06-5416-01 8 99441767 99441767 G A KCNS2 3'UTR 0.25 TCGA-06-5416-01 8 99592010 99592010 A C STK3 Missense_Mutation p.F305C 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 8 99963061 99963061 G A OSR2 Intron 0.55 TCGA-06-5416-01 8 99963751 99963751 C T OSR2 Missense_Mutation p.S254F 0.23 deleterious(0) possibly_damaging(0.658) TCGA-06-5416-01 8 99963874 99963874 G A OSR2 Missense_Mutation p.R295Q 0.47 tolerated(0.14) possibly_damaging(0.734) TCGA-06-5416-01 9 100069983 100069983 C T CCDC180 Intron 0.16 TCGA-06-5416-01 9 100116928 100116928 G T CCDC180 Missense_Mutation p.R1071L 0.19 deleterious(0) benign(0.433) TCGA-06-5416-01 9 100132280 100132280 A G CCDC180 Silent p.E1466E 0.12 TCGA-06-5416-01 9 100190797 100190797 C A TDRD7 Missense_Mutation p.S17Y 0.22 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 9 100227298 100227298 G T TDRD7 Missense_Mutation p.E539D 0.17 tolerated(1) benign(0.003) TCGA-06-5416-01 9 100240847 100240847 C T TDRD7 Missense_Mutation p.P765S 0.17 deleterious(0) probably_damaging(0.982) TCGA-06-5416-01 9 100245568 100245568 C T TDRD7 Silent p.S950S 0.18 TCGA-06-5416-01 9 100364813 100364813 G A TSTD2 Nonsense_Mutation p.R497* 0.23 TCGA-06-5416-01 9 100437727 100437727 T A XPA Missense_Mutation p.K272N 0.19 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 9 100437770 100437770 C T XPA Missense_Mutation p.R258H 0.63 tolerated(0.12) benign(0.014) TCGA-06-5416-01 9 100692991 100692991 G T HEMGN Missense_Mutation p.A229D 0.24 deleterious(0.01) benign(0.023) TCGA-06-5416-01 9 100693489 100693489 C T HEMGN Missense_Mutation p.R63H 0.18 tolerated(0.69) benign(0) TCGA-06-5416-01 9 100890919 100890919 G A CORO2A Silent p.I350I 0.26 TCGA-06-5416-01 9 101052876 101052876 G A GABBR2 Missense_Mutation p.S939L 0.23 deleterious_low_confidence(0) possibly_damaging(0.619) TCGA-06-5416-01 9 101061536 101061536 G T GABBR2 Missense_Mutation p.L838I 0.17 tolerated(0.19) benign(0.225) TCGA-06-5416-01 9 101243217 101243217 A C GABBR2 Missense_Mutation p.C265W 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 9 101470736 101470736 C T GABBR2 Missense_Mutation p.R95H 0.21 tolerated(0.17) benign(0.002) TCGA-06-5416-01 9 101542604 101542604 C T ANKS6 Missense_Mutation p.R412Q 0.28 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 101594211 101594211 C T GALNT12 Missense_Mutation p.R297W 0.22 deleterious(0) probably_damaging(0.932) TCGA-06-5416-01 9 101767198 101767198 C T COL15A1 Missense_Mutation p.R407C 0.21 deleterious_low_confidence(0.02) benign(0.057) TCGA-06-5416-01 9 101802808 101802808 G A COL15A1 Silent p.P827P 0.38 TCGA-06-5416-01 9 101824269 101824269 A C COL15A1 Missense_Mutation p.N1140T 0.19 tolerated(0.5) benign(0.184) TCGA-06-5416-01 9 102589019 102589019 T C NR4A3 5'UTR 0.23 TCGA-06-5416-01 9 102590546 102590546 C A NR4A3 Silent p.S85S 0.21 TCGA-06-5416-01 9 102594985 102594985 A C NR4A3 Missense_Mutation p.K333N 0.67 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 102595007 102595007 G A NR4A3 Missense_Mutation p.A341T 0.26 deleterious(0.02) possibly_damaging(0.674) TCGA-06-5416-01 9 102607097 102607097 T A NR4A3 Missense_Mutation p.F485Y 0.24 deleterious(0.01) benign(0.417) TCGA-06-5416-01 9 103054921 103054921 C A INVS Silent p.R794R 0.24 TCGA-06-5416-01 9 103055128 103055128 G T INVS Missense_Mutation p.E863D 0.57 tolerated_low_confidence(0.45) benign(0.001) TCGA-06-5416-01 9 103063060 103063060 G A INVS 3'UTR 0.38 TCGA-06-5416-01 9 103065947 103065947 C T TEX10 Silent p.A881A 0.21 TCGA-06-5416-01 9 103213099 103213099 G T MSANTD3 Nonsense_Mutation p.E227* 0.69 TCGA-06-5416-01 9 103213161 103213161 G T MSANTD3 Missense_Mutation p.K247N 0.54 deleterious_low_confidence(0.01) benign(0.057) TCGA-06-5416-01 9 104130596 104130596 G T BAAT Missense_Mutation p.L159I 0.23 deleterious(0) benign(0.024) TCGA-06-5416-01 9 104171215 104171215 C T ZNF189 Missense_Mutation p.R389C 0.17 tolerated(0.15) probably_damaging(0.958) TCGA-06-5416-01 9 104171587 104171587 C A ZNF189 Missense_Mutation p.L513M 0.40 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 9 104193132 104193132 T C ALDOB Missense_Mutation p.K13R 0.66 tolerated(0.12) benign(0.035) TCGA-06-5416-01 9 104238793 104238793 G A TMEM246 Silent p.C194C 0.23 TCGA-06-5416-01 9 104302597 104302597 G A RNF20 Missense_Mutation p.R81Q 0.23 deleterious(0.03) benign(0) TCGA-06-5416-01 9 104309182 104309182 G A RNF20 Nonsense_Mutation p.W276* 0.40 TCGA-06-5416-01 9 104319792 104319792 G T RNF20 Nonsense_Mutation p.E766* 0.19 TCGA-06-5416-01 9 105767004 105767004 G T CYLC2 Missense_Mutation p.D70Y 0.11 tolerated(0.14) possibly_damaging(0.769) TCGA-06-5416-01 9 105767658 105767658 A C CYLC2 Missense_Mutation p.K249Q 0.22 deleterious(0.02) unknown(0) TCGA-06-5416-01 9 105767727 105767727 A C CYLC2 Missense_Mutation p.K272Q 0.14 deleterious(0.02) unknown(0) TCGA-06-5416-01 9 106878575 106878575 A G SMC2 Missense_Mutation p.E589G 0.22 tolerated(0.14) benign(0.019) TCGA-06-5416-01 9 107331753 107331753 T G OR13C8 Missense_Mutation p.F102C 0.23 tolerated(0.07) possibly_damaging(0.759) TCGA-06-5416-01 9 107332343 107332343 C T OR13C8 Nonsense_Mutation p.R299* 0.19 TCGA-06-5416-01 9 107380053 107380053 C T OR13C9 Missense_Mutation p.A145T 0.19 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 9 107380061 107380061 A G OR13C9 Missense_Mutation p.V142A 0.21 deleterious(0.05) probably_damaging(0.997) TCGA-06-5416-01 9 107456981 107456981 C A OR13D1 Missense_Mutation p.F93L 0.23 tolerated(0.08) probably_damaging(0.998) TCGA-06-5416-01 9 107457448 107457448 C T OR13D1 Missense_Mutation p.S249F 0.23 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 9 107457697 107457697 C T OR13D1 Missense_Mutation p.A332V 0.27 deleterious(0) benign(0.117) TCGA-06-5416-01 9 107562246 107562246 C T ABCA1 Nonsense_Mutation p.W1599* 0.23 TCGA-06-5416-01 9 107568584 107568584 C T ABCA1 Missense_Mutation p.D1468N 0.20 tolerated(0.11) benign(0.004) TCGA-06-5416-01 9 107568625 107568625 C T ABCA1 Nonsense_Mutation p.W1454* 0.52 TCGA-06-5416-01 9 107574903 107574903 C T ABCA1 Nonsense_Mutation p.W1334* 0.22 TCGA-06-5416-01 9 107579668 107579668 C A ABCA1 Missense_Mutation p.Q1160H 0.41 tolerated(0.11) benign(0.017) TCGA-06-5416-01 9 107582259 107582259 C T ABCA1 Missense_Mutation p.D1018N 0.26 deleterious(0.03) probably_damaging(1) TCGA-06-5416-01 9 107624082 107624082 C A ABCA1 Splice_Site p.X141_splice 0.18 TCGA-06-5416-01 9 108120667 108120667 G A SLC44A1 Missense_Mutation p.R238K 0.17 tolerated(0.43) benign(0.002) TCGA-06-5416-01 9 108397610 108397610 A G FKTN 3'UTR 0.22 TCGA-06-5416-01 9 109688994 109688994 G T ZNF462 Missense_Mutation p.S934I 0.19 probably_damaging(0.999) TCGA-06-5416-01 9 109689564 109689564 G A ZNF462 Missense_Mutation p.R1124Q 0.18 probably_damaging(0.978) TCGA-06-5416-01 9 109689600 109689600 G A ZNF462 Missense_Mutation p.R1136K 0.26 probably_damaging(0.952) TCGA-06-5416-01 9 109689688 109689688 C T ZNF462 Silent p.G1165G 0.68 TCGA-06-5416-01 9 109691101 109691101 G T ZNF462 Missense_Mutation p.E1636D 0.22 benign(0.002) TCGA-06-5416-01 9 109736485 109736485 C T ZNF462 Missense_Mutation p.R2255C 0.25 probably_damaging(0.996) TCGA-06-5416-01 9 109765659 109765659 G A ZNF462 Missense_Mutation p.D2381N 0.22 benign(0.377) TCGA-06-5416-01 9 110081092 110081092 G T RAD23B Nonsense_Mutation p.E205* 0.22 TCGA-06-5416-01 9 111617802 111617802 C T ACTL7B Missense_Mutation p.A137T 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 111617953 111617953 C T ACTL7B Silent p.A86A 0.63 TCGA-06-5416-01 9 111624953 111624953 C T ACTL7A Silent p.F117F 0.63 TCGA-06-5416-01 9 111625145 111625145 G T ACTL7A Missense_Mutation p.E181D 0.16 deleterious(0) possibly_damaging(0.765) TCGA-06-5416-01 9 111625496 111625496 G A ACTL7A Silent p.T298T 0.64 TCGA-06-5416-01 9 111692165 111692165 G A IKBKAP Missense_Mutation p.L63F 0.27 tolerated(0.06) probably_damaging(0.99) TCGA-06-5416-01 9 111698699 111698699 C T FAM206A Silent p.V81V 0.65 TCGA-06-5416-01 9 111741601 111741601 C T CTNNAL1 Missense_Mutation p.R354K 0.23 tolerated(0.67) benign(0.014) TCGA-06-5416-01 9 111979340 111979340 C T EPB41L4B Missense_Mutation p.A499T 0.25 tolerated(0.26) benign(0.001) TCGA-06-5416-01 9 112018493 112018493 G T EPB41L4B Silent p.G284G 0.22 TCGA-06-5416-01 9 112143935 112143935 T C PTPN3 Silent p.T887T 0.21 TCGA-06-5416-01 9 112172653 112172653 C A PTPN3 Missense_Mutation p.Q452H 0.22 tolerated(0.55) benign(0.002) TCGA-06-5416-01 9 112216839 112216839 G A PTPN3 Missense_Mutation p.T102I 0.15 tolerated(0.41) benign(0.012) TCGA-06-5416-01 9 112778280 112778280 G A PALM2-AKAP2 Silent p.S181S 0.20 TCGA-06-5416-01 9 113173398 113173398 G A SVEP1 Missense_Mutation p.T2198M 0.21 probably_damaging(0.982) TCGA-06-5416-01 9 113173410 113173410 C T SVEP1 Missense_Mutation p.S2194N 0.17 benign(0.013) TCGA-06-5416-01 9 113192698 113192699 CC TCT SVEP1 Frame_Shift_Ins p.N1797Kfs*7 0.34 TCGA-06-5416-01 9 113205981 113205981 C T SVEP1 Missense_Mutation p.G1495S 0.14 probably_damaging(0.951) TCGA-06-5416-01 9 113233714 113233714 G A SVEP1 Silent p.S976S 0.13 TCGA-06-5416-01 9 113234604 113234604 C A SVEP1 Splice_Site p.X867_splice 0.24 TCGA-06-5416-01 9 113550118 113550118 G T MUSK Nonsense_Mutation p.G643* 0.21 TCGA-06-5416-01 9 113637995 113637995 A G LPAR1 Silent p.F267F 0.62 TCGA-06-5416-01 9 114134039 114134039 C A KIAA0368 Missense_Mutation p.Q1711H 0.29 deleterious(0.03) possibly_damaging(0.632) TCGA-06-5416-01 9 114134091 114134091 C T KIAA0368 Missense_Mutation p.R1694Q 0.22 deleterious(0.01) probably_damaging(0.983) TCGA-06-5416-01 9 114148667 114148667 G A KIAA0368 Nonsense_Mutation p.R1351* 0.56 TCGA-06-5416-01 9 114174395 114174395 C T KIAA0368 Missense_Mutation p.E883K 0.33 tolerated(0.05) possibly_damaging(0.8) TCGA-06-5416-01 9 114305404 114305404 G T ZNF483 Missense_Mutation p.S730I 0.19 deleterious(0.01) possibly_damaging(0.727) TCGA-06-5416-01 9 114449037 114449037 C A C9orf84 3'UTR 0.29 TCGA-06-5416-01 9 114469018 114469018 G A C9orf84 Missense_Mutation p.S792F 0.20 tolerated(0.08) benign(0.184) TCGA-06-5416-01 9 114919809 114919809 A G SUSD1 Missense_Mutation p.F63S 0.20 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 9 115167951 115167951 G A HSDL2 Missense_Mutation p.D77N 0.22 tolerated(0.09) benign(0.065) TCGA-06-5416-01 9 115204012 115204012 A C HSDL2 Missense_Mutation p.E276A 0.22 tolerated(0.18) benign(0.002) TCGA-06-5416-01 9 115336348 115336348 C T KIAA1958 5'UTR 0.27 TCGA-06-5416-01 9 115336390 115336390 G A KIAA1958 Silent p.E10E 0.24 TCGA-06-5416-01 9 115451846 115451846 C T INIP Silent p.E60E 0.25 TCGA-06-5416-01 9 115651894 115651894 G T SLC46A2 Silent p.V356V 0.11 TCGA-06-5416-01 9 115652336 115652336 G A SLC46A2 Missense_Mutation p.T209M 0.20 tolerated(0.06) benign(0.315) TCGA-06-5416-01 9 115805151 115805152 - A ZFP37 Frame_Shift_Ins p.N583* 0.18 TCGA-06-5416-01 9 115805288 115805288 C A ZFP37 Missense_Mutation p.R537I 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 115805440 115805440 C A ZFP37 Missense_Mutation p.E486D 0.19 deleterious(0) probably_damaging(0.919) TCGA-06-5416-01 9 115805456 115805456 C T ZFP37 Missense_Mutation p.R481K 0.70 tolerated(0.25) probably_damaging(0.982) TCGA-06-5416-01 9 115965316 115965316 C A FKBP15 Splice_Site p.X109_splice 0.74 TCGA-06-5416-01 9 116041410 116041410 A C PRPF4 Silent p.R132R 0.20 TCGA-06-5416-01 9 116052999 116052999 C T PRPF4 Nonsense_Mutation p.R390* 0.23 TCGA-06-5416-01 9 116171118 116171118 C A POLE3 Missense_Mutation p.Q139H 0.45 deleterious_low_confidence(0.03) unknown(0) TCGA-06-5416-01 9 116172002 116172002 G C POLE3 Missense_Mutation p.N53K 0.24 tolerated(0.05) probably_damaging(0.99) TCGA-06-5416-01 9 116279843 116279843 C T RGS3 Missense_Mutation p.A566V 0.16 tolerated(0.15) possibly_damaging(0.905) TCGA-06-5416-01 9 116346254 116346254 C T RGS3 Silent p.F854F 0.27 TCGA-06-5416-01 9 116812291 116812291 C T ZNF618 Silent p.L810L 0.17 TCGA-06-5416-01 9 116823748 116823748 T G AMBP Missense_Mutation p.N270T 0.06 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 9 116929972 116929972 T G COL27A1 Missense_Mutation p.V46G 0.20 unknown(0) TCGA-06-5416-01 9 117044785 117044785 G T COL27A1 Missense_Mutation p.D1274Y 0.72 probably_damaging(0.995) TCGA-06-5416-01 9 117062364 117062364 G T COL27A1 Missense_Mutation p.E1533D 0.64 unknown(0) TCGA-06-5416-01 9 117062910 117062910 G A COL27A1 Silent p.P1548P 0.13 TCGA-06-5416-01 9 117071735 117071735 G A COL27A1 Missense_Mutation p.E1805K 0.26 unknown(0) TCGA-06-5416-01 9 117085470 117085470 G T ORM1 Missense_Mutation p.Q19H 0.20 deleterious(0.02) possibly_damaging(0.561) TCGA-06-5416-01 9 117087090 117087090 G A ORM1 Missense_Mutation p.A117T 0.31 deleterious(0.01) probably_damaging(0.977) TCGA-06-5416-01 9 117087391 117087391 C T ORM1 Missense_Mutation p.R167C 0.22 tolerated(0.05) benign(0.003) TCGA-06-5416-01 9 117143451 117143451 G A AKNA Missense_Mutation p.L55F 0.18 deleterious(0.02) probably_damaging(0.935) TCGA-06-5416-01 9 117241034 117241034 C A DFNB31 Missense_Mutation p.K212N 0.24 tolerated(0.07) benign(0.257) TCGA-06-5416-01 9 117354918 117354918 G A ATP6V1G1 Missense_Mutation p.A57T 0.31 tolerated(0.53) benign(0.084) TCGA-06-5416-01 9 117666360 117666360 C T TNFSF8 Missense_Mutation p.V186I 0.21 tolerated(1) benign(0.002) TCGA-06-5416-01 9 117692665 117692665 T C TNFSF8 5'UTR 0.13 TCGA-06-5416-01 9 117797510 117797510 G T TNC Silent p.V1920V 0.23 TCGA-06-5416-01 9 117826275 117826275 G T TNC Missense_Mutation p.A1187D 0.68 deleterious(0.02) probably_damaging(0.949) TCGA-06-5416-01 9 117838800 117838800 G A TNC Missense_Mutation p.T910I 0.62 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 9 117840390 117840390 T C TNC Missense_Mutation p.T836A 0.17 tolerated(0.32) benign(0.043) TCGA-06-5416-01 9 117845042 117845042 T C TNC Missense_Mutation p.T726A 0.23 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 9 117848515 117848515 G A TNC Missense_Mutation p.R499C 0.25 deleterious(0) possibly_damaging(0.462) TCGA-06-5416-01 9 118164500 118164500 C T DEC1 3'UTR 0.33 TCGA-06-5416-01 9 118949550 118949550 G A PAPPA Missense_Mutation p.R178Q 0.42 deleterious(0) possibly_damaging(0.863) TCGA-06-5416-01 9 119093530 119093530 G A PAPPA Missense_Mutation p.R1052Q 0.12 tolerated(0.39) benign(0.238) TCGA-06-5416-01 9 119115193 119115193 G T PAPPA Missense_Mutation p.K1391N 0.25 tolerated(0.07) possibly_damaging(0.728) TCGA-06-5416-01 9 119158951 119158951 T C PAPPA 3'UTR 0.21 TCGA-06-5416-01 9 119903616 119903616 C T ASTN2 Intron 0.17 TCGA-06-5416-01 9 119977007 119977007 C T ASTN2 Silent p.A215A 0.71 TCGA-06-5416-01 9 121371 121371 G A CBWD1 3'UTR 0.23 TCGA-06-5416-01 9 123182169 123182169 C T CDK5RAP2 Silent p.A1358A 0.20 TCGA-06-5416-01 9 123201695 123201695 C T CDK5RAP2 Missense_Mutation p.R1235K 0.70 tolerated(0.21) benign(0.004) TCGA-06-5416-01 9 123210344 123210344 A G CDK5RAP2 Missense_Mutation p.Y952H 0.21 tolerated(0.49) possibly_damaging(0.86) TCGA-06-5416-01 9 123215797 123215797 C A CDK5RAP2 Missense_Mutation p.E910D 0.18 deleterious(0.03) possibly_damaging(0.636) TCGA-06-5416-01 9 123232406 123232406 C A CDK5RAP2 Nonsense_Mutation p.E651* 0.71 TCGA-06-5416-01 9 123232432 123232432 C T CDK5RAP2 Missense_Mutation p.R642Q 0.22 tolerated(0.34) possibly_damaging(0.885) TCGA-06-5416-01 9 123593718 123593718 C A PSMD5 Missense_Mutation p.R151I 0.23 tolerated(0.1) benign(0.312) TCGA-06-5416-01 9 123805376 123805376 C T C5 Silent p.K109K 0.19 TCGA-06-5416-01 9 123850618 123850618 C A CNTRL Missense_Mutation p.S5Y 0.25 possibly_damaging(0.629) TCGA-06-5416-01 9 123921262 123921262 G T CNTRL Nonsense_Mutation p.E1632* 0.14 TCGA-06-5416-01 9 124079381 124079381 G A GSN Silent p.G308G 0.18 TCGA-06-5416-01 9 124522592 124522592 C T DAB2IP Silent p.F320F 0.25 TCGA-06-5416-01 9 124544617 124544617 G A DAB2IP Missense_Mutation p.R1109H 0.23 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 124936843 124936843 G A MORN5 Missense_Mutation p.G126S 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 124975928 124975928 G A LHX6 Silent p.S337S 0.72 TCGA-06-5416-01 9 124979509 124979509 G A LHX6 Missense_Mutation p.R174W 0.35 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 125148802 125148802 G T PTGS1 Nonsense_Mutation p.E363* 0.23 TCGA-06-5416-01 9 125239722 125239722 G T OR1J1 Missense_Mutation p.L162I 0.16 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-06-5416-01 9 125289095 125289095 G T OR1N1 Missense_Mutation p.L160I 0.27 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 125289436 125289436 G A OR1N1 Missense_Mutation p.A46V 0.15 tolerated(0.08) benign(0.018) TCGA-06-5416-01 9 125316209 125316209 C T OR1N2 Missense_Mutation p.A254V 0.62 tolerated(0.06) probably_damaging(0.998) TCGA-06-5416-01 9 125377620 125377620 G T OR1Q1 Nonsense_Mutation p.E202* 0.18 TCGA-06-5416-01 9 125424839 125424839 C A OR1L1 Missense_Mutation p.P282H 0.19 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 9 125486414 125486414 C T OR1L4 Missense_Mutation p.A49V 0.21 deleterious(0.04) benign(0.007) TCGA-06-5416-01 9 125486764 125486764 C T OR1L4 Missense_Mutation p.R166C 0.07 deleterious(0.01) probably_damaging(0.913) TCGA-06-5416-01 9 125512622 125512622 C T OR1L6 Missense_Mutation p.R166C 0.16 deleterious(0.01) probably_damaging(0.967) TCGA-06-5416-01 9 125551511 125551511 C A OR5C1 Silent p.A100A 0.67 TCGA-06-5416-01 9 125551869 125551869 G A OR5C1 Missense_Mutation p.V220M 0.23 deleterious(0) benign(0.417) TCGA-06-5416-01 9 125562682 125562682 C T OR1K1 Missense_Mutation p.S94L 0.18 deleterious(0.05) possibly_damaging(0.627) TCGA-06-5416-01 9 125563326 125563326 C T OR1K1 Nonsense_Mutation p.R309* 0.19 TCGA-06-5416-01 9 125585446 125585446 C T PDCL Missense_Mutation p.R68H 0.26 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 9 125652761 125652761 A G RC3H2 Missense_Mutation p.V138A 0.13 deleterious(0.01) possibly_damaging(0.9) TCGA-06-5416-01 9 125655228 125655228 C A RC3H2 Missense_Mutation p.E103D 0.39 deleterious(0.02) probably_damaging(0.931) TCGA-06-5416-01 9 125680970 125680970 G A ZBTB26 Missense_Mutation p.P415L 0.22 tolerated_low_confidence(0.14) benign(0) TCGA-06-5416-01 9 125941376 125941376 A G STRBP Missense_Mutation p.V45A 0.15 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 9 126129520 126129520 G A CRB2 Missense_Mutation p.R275Q 0.23 tolerated(0.19) unknown(0) TCGA-06-5416-01 9 126132895 126132895 G T CRB2 Missense_Mutation p.Q521H 0.18 deleterious(0.01) possibly_damaging(0.522) TCGA-06-5416-01 9 126133138 126133138 C T CRB2 Silent p.G602G 0.16 TCGA-06-5416-01 9 126133803 126133803 C T CRB2 Silent p.G794G 0.41 TCGA-06-5416-01 9 126135818 126135818 G A CRB2 Missense_Mutation p.R1003H 0.23 tolerated(0.6) possibly_damaging(0.812) TCGA-06-5416-01 9 126392726 126392726 C T DENND1A Silent p.A216A 0.21 TCGA-06-5416-01 9 12695554 12695554 A G TYRP1 Missense_Mutation p.N142S 0.18 tolerated(0.18) benign(0.001) TCGA-06-5416-01 9 12695729 12695729 C T TYRP1 Silent p.F200F 0.11 TCGA-06-5416-01 9 12698480 12698480 T A TYRP1 Silent p.L246L 0.40 TCGA-06-5416-01 9 127088686 127088686 G A NEK6 Silent p.E195E 0.25 TCGA-06-5416-01 9 127253419 127253419 G A NR5A1 Missense_Mutation p.A360V 0.45 tolerated(0.31) benign(0.01) TCGA-06-5416-01 9 127262832 127262832 G A NR5A1 Missense_Mutation p.P136L 0.66 tolerated(0.42) benign(0.048) TCGA-06-5416-01 9 127549478 127549478 G T OLFML2A Missense_Mutation p.K105N 0.23 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 9 127572447 127572447 G A OLFML2A Missense_Mutation p.R572Q 0.55 deleterious(0) possibly_damaging(0.553) TCGA-06-5416-01 9 127618003 127618003 G T WDR38 Missense_Mutation p.R94I 0.22 tolerated(0.17) benign(0.072) TCGA-06-5416-01 9 127639196 127639196 C A ARPC5L Missense_Mutation p.L147I 0.18 deleterious(0.01) possibly_damaging(0.824) TCGA-06-5416-01 9 127975775 127975775 G A RABEPK Missense_Mutation p.R113Q 0.18 tolerated(0.17) benign(0.314) TCGA-06-5416-01 9 127999326 127999326 C A HSPA5 Missense_Mutation p.D504Y 0.17 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-06-5416-01 9 128086093 128086093 C T GAPVD1 Silent p.S583S 0.21 TCGA-06-5416-01 9 128099688 128099688 C T GAPVD1 Nonsense_Mutation p.R926* 0.24 TCGA-06-5416-01 9 12821632 12821632 C T LURAP1L Missense_Mutation p.A187V 0.17 tolerated(0.15) benign(0.023) TCGA-06-5416-01 9 128434734 128434734 C T MAPKAP1 Silent p.K40K 0.20 TCGA-06-5416-01 9 128728299 128728299 G A PBX3 3'UTR 0.27 TCGA-06-5416-01 9 129642864 129642864 C T ZBTB34 Nonsense_Mutation p.R392* 0.25 TCGA-06-5416-01 9 130127644 130127644 C T GARNL3 Silent p.N720N 0.23 TCGA-06-5416-01 9 130155499 130155499 C A GARNL3 Missense_Mutation p.A1003D 0.07 deleterious_low_confidence(0.01) benign(0.147) TCGA-06-5416-01 9 130191112 130191112 A G ZNF79 Silent p.V6V 0.21 TCGA-06-5416-01 9 130263314 130263314 C T LRSAM1 Silent p.V646V 0.61 TCGA-06-5416-01 9 130269647 130269647 T G FAM129B Missense_Mutation p.N573T 0.15 deleterious(0.03) possibly_damaging(0.852) TCGA-06-5416-01 9 130270468 130270468 G A FAM129B Silent p.Y482Y 0.17 TCGA-06-5416-01 9 130294008 130294008 C T FAM129B Silent p.Q35Q 0.20 TCGA-06-5416-01 9 130471809 130471809 G A C9orf117 Silent p.T90T 0.41 TCGA-06-5416-01 9 130482443 130482443 C A TTC16 Nonsense_Mutation p.C171* 0.27 TCGA-06-5416-01 9 130486429 130486429 C T TTC16 Silent p.F301F 0.26 TCGA-06-5416-01 9 130493029 130493029 C T TTC16 Missense_Mutation p.S656L 0.19 deleterious(0) possibly_damaging(0.479) TCGA-06-5416-01 9 130536625 130536625 C T SH2D3C Silent p.T53T 0.17 TCGA-06-5416-01 9 130587578 130587578 C T ENG Missense_Mutation p.V250I 0.28 tolerated(0.85) benign(0.034) TCGA-06-5416-01 9 130656887 130656887 G T ST6GALNAC6 Silent p.V67V 0.21 TCGA-06-5416-01 9 130826115 130826115 C T NAIF1 Silent p.A192A 0.20 TCGA-06-5416-01 9 130914544 130914544 C T LCN2 Silent p.I186I 0.58 TCGA-06-5416-01 9 130941553 130941553 G T CIZ1 Missense_Mutation p.F311L 0.68 tolerated(0.13) benign(0.021) TCGA-06-5416-01 9 131002043 131002043 G T DNM1 Missense_Mutation p.K510N 0.21 tolerated(0.11) benign(0.209) TCGA-06-5416-01 9 131009740 131009740 C A DNM1 Missense_Mutation p.A623D 0.32 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 9 131036205 131036205 G A GOLGA2 Missense_Mutation p.A44V 0.20 tolerated(0.25) benign(0.018) TCGA-06-5416-01 9 131046793 131046793 C T SWI5 Missense_Mutation p.P144L 0.17 tolerated(0.07) probably_damaging(0.981) TCGA-06-5416-01 9 131095873 131095873 G A COQ4 Silent p.R249R 0.35 TCGA-06-5416-01 9 131117381 131117381 C T SLC27A4 Silent p.R458R 0.58 TCGA-06-5416-01 9 131117718 131117718 C T SLC27A4 Nonsense_Mutation p.R502* 0.18 TCGA-06-5416-01 9 13113982 13113982 G T MPDZ Silent p.L1806L 0.19 TCGA-06-5416-01 9 13121782 13121782 C A MPDZ Missense_Mutation p.Q1729H 0.29 tolerated(0.17) benign(0.007) TCGA-06-5416-01 9 131261306 131261306 C A ODF2 Silent p.L734L 0.25 TCGA-06-5416-01 9 131366643 131366643 C T SPTAN1 Silent p.A1222A 0.18 TCGA-06-5416-01 9 131371198 131371198 G A SPTAN1 Missense_Mutation p.A1513T 0.22 tolerated(0.23) unknown(0) TCGA-06-5416-01 9 131375742 131375742 A C SPTAN1 Missense_Mutation p.E1709A 0.38 deleterious(0.03) benign(0.008) TCGA-06-5416-01 9 131377923 131377923 G T SPTAN1 Missense_Mutation p.D1721Y 0.16 deleterious(0) benign(0.032) TCGA-06-5416-01 9 131396538 131396538 G A WDR34 Missense_Mutation p.R447W 0.78 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 131482697 131482697 G A PKN3 Missense_Mutation p.A828T 0.19 tolerated(0.16) benign(0.017) TCGA-06-5416-01 9 131512990 131512990 T C ZER1 Missense_Mutation p.T422A 0.16 tolerated(0.16) benign(0.022) TCGA-06-5416-01 9 131566384 131566384 C T TBC1D13 Missense_Mutation p.L302F 0.69 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 9 131586390 131586390 C T C9orf114 Missense_Mutation p.R292H 0.58 deleterious(0.02) benign(0.164) TCGA-06-5416-01 9 131670360 131670360 G A LRRC8A Missense_Mutation p.R306H 0.13 tolerated(0.12) benign(0.143) TCGA-06-5416-01 9 131757608 131757608 G T NUP188 Missense_Mutation p.D1056Y 0.23 deleterious(0.01) possibly_damaging(0.73) TCGA-06-5416-01 9 131767709 131767709 C T NUP188 Missense_Mutation p.A1546V 0.17 tolerated(0.21) possibly_damaging(0.501) TCGA-06-5416-01 9 131777051 131777051 G A SH3GLB2 Missense_Mutation p.S156L 0.23 tolerated(0.31) possibly_damaging(0.804) TCGA-06-5416-01 9 131821447 131821447 G T FAM73B Silent p.R230R 0.15 TCGA-06-5416-01 9 131847568 131847568 C T DOLPP1 Silent p.F115F 0.19 TCGA-06-5416-01 9 131848467 131848467 G A DOLPP1 Missense_Mutation p.A171T 0.14 tolerated(0.18) benign(0.016) TCGA-06-5416-01 9 131890343 131890343 C T PPP2R4 Intron 0.27 TCGA-06-5416-01 9 13216817 13216817 C T MPDZ Missense_Mutation p.V416I 0.32 deleterious(0.01) probably_damaging(0.981) TCGA-06-5416-01 9 132375855 132375855 T C C9orf50 Missense_Mutation p.N301S 0.23 tolerated(0.33) possibly_damaging(0.801) TCGA-06-5416-01 9 132395134 132395134 G T NTMT1 Missense_Mutation p.R51M 0.19 deleterious(0.01) possibly_damaging(0.846) TCGA-06-5416-01 9 132401756 132401756 G A ASB6 Silent p.I109I 0.25 TCGA-06-5416-01 9 132403006 132403006 G A ASB6 Intron 0.23 TCGA-06-5416-01 9 132481604 132481604 G A PRRX2 Silent p.A118A 0.26 TCGA-06-5416-01 9 132484701 132484701 G T PRRX2 3'UTR 0.62 TCGA-06-5416-01 9 132569511 132569511 G A TOR1B Silent p.A170A 0.26 TCGA-06-5416-01 9 132581028 132581028 G A TOR1A Missense_Mutation p.L206F 0.63 deleterious(0) possibly_damaging(0.86) TCGA-06-5416-01 9 132585059 132585059 G A TOR1A Missense_Mutation p.A82V 0.25 deleterious(0.01) possibly_damaging(0.744) TCGA-06-5416-01 9 132593203 132593203 C A C9orf78 Missense_Mutation p.E163D 0.20 tolerated(0.06) possibly_damaging(0.583) TCGA-06-5416-01 9 132642561 132642561 G A USP20 3'UTR 0.22 TCGA-06-5416-01 9 133491819 133491819 A G FUBP3 Missense_Mutation p.N161S 0.64 tolerated(0.22) benign(0.002) TCGA-06-5416-01 9 133760649 133760649 C T ABL1 Missense_Mutation p.A1010V 0.21 tolerated_low_confidence(0.14) benign(0.174) TCGA-06-5416-01 9 133760957 133760957 C A ABL1 Missense_Mutation p.L1113I 0.18 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-06-5416-01 9 133914353 133914353 C T LAMC3 Missense_Mutation p.A360V 0.14 tolerated(0.13) possibly_damaging(0.862) TCGA-06-5416-01 9 134165667 134165667 C T PPAPDC3 Missense_Mutation p.R95W 0.69 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 134312046 134312046 G A PRRC2B Silent p.P111P 0.65 TCGA-06-5416-01 9 134346337 134346337 G T PRRC2B Missense_Mutation p.V692L 0.27 deleterious(0.01) probably_damaging(0.992) TCGA-06-5416-01 9 134386798 134386798 C A POMT1 Silent p.V332V 0.23 TCGA-06-5416-01 9 134388672 134388672 G A POMT1 Missense_Mutation p.D399N 0.65 deleterious(0.01) benign(0.232) TCGA-06-5416-01 9 134467506 134467506 G C RAPGEF1 Silent p.L750L 0.22 TCGA-06-5416-01 9 134526227 134526227 G A RAPGEF1 Silent p.S58S 0.17 TCGA-06-5416-01 9 134735955 134735955 G A MED27 Silent p.L302L 0.25 TCGA-06-5416-01 9 134769322 134769322 G A MED27 Nonsense_Mutation p.R211* 0.25 TCGA-06-5416-01 9 135073412 135073412 G A NTNG2 Silent p.P91P 0.68 TCGA-06-5416-01 9 135073815 135073815 G A NTNG2 Missense_Mutation p.D226N 0.64 tolerated(0.25) benign(0.169) TCGA-06-5416-01 9 135102321 135102321 G A NTNG2 Missense_Mutation p.D315N 0.26 deleterious(0) possibly_damaging(0.479) TCGA-06-5416-01 9 135156877 135156877 G A SETX Missense_Mutation p.L2211F 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 135164012 135164012 G A SETX Nonsense_Mutation p.R2045* 0.71 TCGA-06-5416-01 9 135202834 135202834 G A SETX Missense_Mutation p.S1384F 0.20 deleterious(0.05) benign(0.021) TCGA-06-5416-01 9 135203226 135203226 C A SETX Missense_Mutation p.Q1253H 0.19 deleterious(0.03) benign(0.077) TCGA-06-5416-01 9 135205518 135205518 G A SETX Silent p.V489V 0.65 TCGA-06-5416-01 9 135412990 135412990 C A C9orf171 Missense_Mutation p.P212H 0.66 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 9 135545633 135545633 C T DDX31 Missense_Mutation p.A2T 0.57 deleterious_low_confidence(0) benign(0.003) TCGA-06-5416-01 9 135554338 135554338 C T GTF3C4 Silent p.D444D 0.66 TCGA-06-5416-01 9 135759359 135759359 C T C9orf9 Missense_Mutation p.R9C 0.66 deleterious(0.04) benign(0.06) TCGA-06-5416-01 9 135787780 135787780 C A TSC1 Nonsense_Mutation p.E268* 0.21 TCGA-06-5416-01 9 135801032 135801032 G A TSC1 Missense_Mutation p.S102F 0.40 deleterious(0.01) probably_damaging(0.949) TCGA-06-5416-01 9 135866331 135866331 G A GFI1B Missense_Mutation p.R296H 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 135942581 135942581 C T CEL Missense_Mutation p.A298V 0.67 tolerated(0.24) benign(0) TCGA-06-5416-01 9 135944148 135944148 G A CEL Missense_Mutation p.D332N 0.12 deleterious(0.04) possibly_damaging(0.786) TCGA-06-5416-01 9 135962307 135962307 G A CELP RNA 0.32 TCGA-06-5416-01 9 135977060 135977060 C T RALGDS Silent p.T767T 0.28 TCGA-06-5416-01 9 136029025 136029025 G T GBGT1 Missense_Mutation p.P328H 0.24 deleterious(0.01) benign(0.213) TCGA-06-5416-01 9 136029309 136029309 G A GBGT1 Silent p.A233A 0.16 TCGA-06-5416-01 9 136030426 136030426 T C GBGT1 Intron 0.14 TCGA-06-5416-01 9 136082659 136082659 G A OBP2B Silent p.C114C 0.33 TCGA-06-5416-01 9 136131579 136131579 C T RP11-430N14.4 5'Flank 0.33 TCGA-06-5416-01 9 136198637 136198637 C T SURF6 3'UTR 0.26 TCGA-06-5416-01 9 136208460 136208460 G T MED22 Silent p.L166L 0.38 TCGA-06-5416-01 9 136231807 136231807 C A SURF4 Missense_Mutation p.S151I 0.18 tolerated(0.11) benign(0.023) TCGA-06-5416-01 9 136251407 136251407 C T C9orf96 Missense_Mutation p.P76S 0.18 deleterious(0.04) possibly_damaging(0.566) TCGA-06-5416-01 9 136262332 136262332 C T C9orf96 Missense_Mutation p.S303F 0.25 tolerated(0.11) benign(0.15) TCGA-06-5416-01 9 136287456 136287456 C T ADAMTS13 5'UTR 0.13 TCGA-06-5416-01 9 136308603 136308603 C T ADAMTS13 Missense_Mutation p.P781S 0.33 tolerated(0.1) benign(0.259) TCGA-06-5416-01 9 136320525 136320525 G A ADAMTS13 Missense_Mutation p.R1123H 0.24 deleterious(0) probably_damaging(0.967) TCGA-06-5416-01 9 136523520 136523520 G A DBH Missense_Mutation p.R602Q 0.42 tolerated(1) benign(0.001) TCGA-06-5416-01 9 136671216 136671216 C T VAV2 Missense_Mutation p.D275N 0.30 tolerated(0.65) possibly_damaging(0.498) TCGA-06-5416-01 9 136917481 136917481 C T BRD3 Missense_Mutation p.E100K 0.18 deleterious(0) probably_damaging(0.929) TCGA-06-5416-01 9 137007093 137007093 C T WDR5 Missense_Mutation p.S96L 0.58 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 137007159 137007159 C T WDR5 Missense_Mutation p.S118L 0.22 tolerated(0.08) benign(0.014) TCGA-06-5416-01 9 137007769 137007769 C T WDR5 Silent p.S152S 0.16 TCGA-06-5416-01 9 137591897 137591897 C T COL5A1 Silent p.Y140Y 0.23 TCGA-06-5416-01 9 137600568 137600568 C G COL5A1 Intron 0.19 TCGA-06-5416-01 9 137620534 137620534 G A COL5A1 Missense_Mutation p.E269K 0.18 benign(0.172) TCGA-06-5416-01 9 137801885 137801885 G T FCN1 Missense_Mutation p.S247Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 138376690 138376690 G T PPP1R26 Nonsense_Mutation p.E112* 0.21 TCGA-06-5416-01 9 138377382 138377382 C T PPP1R26 Silent p.S342S 0.22 TCGA-06-5416-01 9 138378363 138378363 C T PPP1R26 Silent p.D669D 0.21 TCGA-06-5416-01 9 138416980 138416980 A C LCN1 Missense_Mutation p.T170P 0.20 deleterious(0.02) benign(0.336) TCGA-06-5416-01 9 138453700 138453700 C T PAEP Missense_Mutation p.A18V 0.20 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 9 138648751 138648751 G A KCNT1 Silent p.T191T 0.25 TCGA-06-5416-01 9 138651550 138651550 C T KCNT1 Missense_Mutation p.R294W 0.35 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 138713253 138713253 G A CAMSAP1 Missense_Mutation p.A1085V 0.22 tolerated(0.26) benign(0.007) TCGA-06-5416-01 9 138714222 138714222 C T CAMSAP1 Missense_Mutation p.S762N 0.21 tolerated(0.14) benign(0.028) TCGA-06-5416-01 9 138831582 138831582 C A UBAC1 Missense_Mutation p.M300I 0.23 deleterious(0) probably_damaging(0.941) TCGA-06-5416-01 9 138838145 138838145 C A UBAC1 Missense_Mutation p.D172Y 0.39 deleterious(0) possibly_damaging(0.886) TCGA-06-5416-01 9 138903653 138903653 G A NACC2 Silent p.F491F 0.65 TCGA-06-5416-01 9 139256578 139256578 G A DNLZ Silent p.G141G 0.22 TCGA-06-5416-01 9 139262253 139262253 C T CARD9 Missense_Mutation p.A369T 0.28 tolerated(0.75) benign(0) TCGA-06-5416-01 9 139301637 139301637 C T SDCCAG3 Missense_Mutation p.G260E 0.19 tolerated(0.08) probably_damaging(0.977) TCGA-06-5416-01 9 139302326 139302326 C A SDCCAG3 Missense_Mutation p.K118N 0.25 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 9 139342578 139342578 C A SEC16A Missense_Mutation p.K2116N 0.21 deleterious(0.03) probably_damaging(0.999) TCGA-06-5416-01 9 139345745 139345745 C T SEC16A Missense_Mutation p.G2092E 0.41 tolerated(1) benign(0.015) TCGA-06-5416-01 9 139369998 139369998 C T SEC16A Silent p.P690P 0.18 TCGA-06-5416-01 9 139634411 139634411 G T LCN10 Missense_Mutation p.P189T 0.85 deleterious(0.01) possibly_damaging(0.747) TCGA-06-5416-01 9 139651019 139651019 T C LCN8 Missense_Mutation p.I61V 0.17 tolerated(0.54) benign(0.005) TCGA-06-5416-01 9 139658382 139658382 G A LCN15 Missense_Mutation p.S59F 0.20 deleterious(0.02) possibly_damaging(0.685) TCGA-06-5416-01 9 139694931 139694931 G A CCDC183 Missense_Mutation p.D177N 0.23 deleterious(0.01) benign(0.409) TCGA-06-5416-01 9 139734643 139734643 G T RABL6 Missense_Mutation p.K657N 0.16 deleterious_low_confidence(0.03) unknown(0) TCGA-06-5416-01 9 139738929 139738929 G A C9orf172 Silent p.A21A 0.22 TCGA-06-5416-01 9 139739659 139739659 G A C9orf172 Missense_Mutation p.A265T 0.18 tolerated(0.4) benign(0.002) TCGA-06-5416-01 9 139793174 139793174 C T TRAF2 5'UTR 0.67 TCGA-06-5416-01 9 139820309 139820309 G A TRAF2 Missense_Mutation p.D488N 0.16 deleterious(0) possibly_damaging(0.888) TCGA-06-5416-01 9 139835775 139835775 G A FBXW5 Missense_Mutation p.A462V 0.58 deleterious(0) possibly_damaging(0.887) TCGA-06-5416-01 9 139837280 139837280 G A FBXW5 Missense_Mutation p.S156L 0.21 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 139837956 139837956 C T FBXW5 Missense_Mutation p.A66T 0.31 deleterious(0.02) possibly_damaging(0.589) TCGA-06-5416-01 9 139841134 139841134 C T C8G Silent p.V196V 0.23 TCGA-06-5416-01 9 139906999 139906999 C A ABCA2 Missense_Mutation p.A1709S 0.23 tolerated(0.3) benign(0.138) TCGA-06-5416-01 9 139908727 139908727 G T ABCA2 Missense_Mutation p.S1378Y 0.09 deleterious(0.03) probably_damaging(0.94) TCGA-06-5416-01 9 139910835 139910835 C A ABCA2 Missense_Mutation p.K1004N 0.23 tolerated(0.21) benign(0.087) TCGA-06-5416-01 9 139929238 139929238 G A C9orf139 Missense_Mutation p.R102H 0.23 tolerated_low_confidence(0.47) possibly_damaging(0.715) TCGA-06-5416-01 9 139934486 139934486 G A NPDC1 Silent p.A274A 0.18 TCGA-06-5416-01 9 139937390 139937390 C T NPDC1 Missense_Mutation p.R83H 0.62 tolerated(0.27) benign(0.036) TCGA-06-5416-01 9 139995536 139995536 G A MAN1B1 Silent p.T332T 0.67 TCGA-06-5416-01 9 140051135 140051135 C T GRIN1 Missense_Mutation p.A250V 0.53 tolerated(0.42) benign(0.201) TCGA-06-5416-01 9 140074705 140074705 G A ANAPC2 Silent p.D606D 0.20 TCGA-06-5416-01 9 140093776 140093776 G A TPRN Missense_Mutation p.S463L 0.28 deleterious(0.04) benign(0.014) TCGA-06-5416-01 9 140108761 140108761 G A NDOR1 Silent p.S206S 0.23 TCGA-06-5416-01 9 140127478 140127478 G A SLC34A3 Silent p.V157V 0.34 TCGA-06-5416-01 9 140174071 140174071 C T TOR4A Silent p.F310F 0.19 TCGA-06-5416-01 9 140201490 140201490 A G EXD3 Missense_Mutation p.V848A 0.79 deleterious(0) benign(0.142) TCGA-06-5416-01 9 140289767 140289767 G A EXD3 Missense_Mutation p.R15C 0.21 tolerated_low_confidence(0.08) possibly_damaging(0.876) TCGA-06-5416-01 9 140356060 140356060 G A PNPLA7 Missense_Mutation p.P1257S 0.59 tolerated(0.13) possibly_damaging(0.596) TCGA-06-5416-01 9 140387496 140387496 G T PNPLA7 Silent p.I722I 0.72 TCGA-06-5416-01 9 140437923 140437923 T C PNPLA7 Missense_Mutation p.H156R 0.05 tolerated(0.48) benign(0.02) TCGA-06-5416-01 9 140438017 140438017 G A PNPLA7 Missense_Mutation p.R125C 0.17 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 9 140458908 140458908 G A DPH7 Silent p.I309I 0.48 TCGA-06-5416-01 9 140459589 140459589 G A DPH7 Silent p.L220L 0.21 TCGA-06-5416-01 9 140470562 140470562 G T DPH7 Silent p.S115S 0.23 TCGA-06-5416-01 9 140483168 140483168 G T ZMYND19 Silent p.T18T 0.23 TCGA-06-5416-01 9 140508792 140508792 G A ARRDC1 Silent p.R220R 0.22 TCGA-06-5416-01 9 140646844 140646844 G A EHMT1 Missense_Mutation p.G411D 0.66 tolerated(0.21) probably_damaging(1) TCGA-06-5416-01 9 140846737 140846737 G A CACNA1B Silent p.A326A 0.66 TCGA-06-5416-01 9 140846785 140846785 C T CACNA1B Silent p.I342I 0.20 TCGA-06-5416-01 9 140919560 140919560 G A CACNA1B Silent p.P1074P 0.14 TCGA-06-5416-01 9 140953048 140953048 G A CACNA1B Missense_Mutation p.A1446T 0.19 deleterious(0.01) probably_damaging(0.986) TCGA-06-5416-01 9 140953569 140953569 A T CACNA1B Missense_Mutation p.K1504N 0.26 deleterious(0) possibly_damaging(0.601) TCGA-06-5416-01 9 140954143 140954143 T C CACNA1B Missense_Mutation p.V1541A 0.20 deleterious(0.01) possibly_damaging(0.739) TCGA-06-5416-01 9 141013212 141013212 G A CACNA1B Missense_Mutation p.E2008K 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-06-5416-01 9 141070071 141070071 G A TUBBP5 RNA 0.68 TCGA-06-5416-01 9 141070961 141070961 G A TUBBP5 RNA 0.15 TCGA-06-5416-01 9 14146738 14146738 G T NFIB Missense_Mutation p.S292Y 0.14 deleterious(0.01) probably_damaging(0.996) TCGA-06-5416-01 9 14789036 14789036 T C FREM1 Missense_Mutation p.Y1353C 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 14842378 14842378 G T FREM1 Missense_Mutation p.F558L 0.53 tolerated(1) benign(0) TCGA-06-5416-01 9 14851295 14851295 C A FREM1 Missense_Mutation p.R380M 0.09 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 14859182 14859182 G A FREM1 Silent p.S210S 0.43 TCGA-06-5416-01 9 14859255 14859255 C T FREM1 Missense_Mutation p.G186D 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 15465449 15465449 C T PSIP1 3'UTR 0.17 TCGA-06-5416-01 9 154743 154743 C A CBWD1 Nonsense_Mutation p.E210* 0.29 TCGA-06-5416-01 9 15777815 15777815 G A CCDC171 Silent p.V963V 0.18 TCGA-06-5416-01 9 17793415 17793415 G A SH3GL2 Missense_Mutation p.R260Q 0.53 tolerated(0.57) possibly_damaging(0.504) TCGA-06-5416-01 9 18680340 18680340 C A ADAMTSL1 Silent p.S389S 0.25 TCGA-06-5416-01 9 18777504 18777504 C T ADAMTSL1 Missense_Mutation p.R1093C 0.29 deleterious(0.02) possibly_damaging(0.677) TCGA-06-5416-01 9 18777595 18777595 C T ADAMTSL1 Missense_Mutation p.S1123L 0.14 tolerated(0.31) benign(0.079) TCGA-06-5416-01 9 19058172 19058172 C A HAUS6 Nonsense_Mutation p.E865* 0.36 TCGA-06-5416-01 9 19102539 19102539 C T HAUS6 Silent p.S37S 0.20 TCGA-06-5416-01 9 19116467 19116467 C A PLIN2 Nonsense_Mutation p.E365* 0.18 TCGA-06-5416-01 9 19300246 19300246 C T DENND4C Missense_Mutation p.L410F 0.32 deleterious(0.04) probably_damaging(0.984) TCGA-06-5416-01 9 19346106 19346106 G A DENND4C Silent p.S1064S 0.60 TCGA-06-5416-01 9 19371850 19371850 A C DENND4C Intron 0.18 TCGA-06-5416-01 9 19516164 19516164 G A SLC24A2 Missense_Mutation p.P658L 0.30 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 9 20413842 20413842 C A MLLT3 Missense_Mutation p.K334N 0.36 deleterious(0.02) probably_damaging(0.941) TCGA-06-5416-01 9 20413882 20413882 G A MLLT3 Missense_Mutation p.S321F 0.16 tolerated(0.72) probably_damaging(0.986) TCGA-06-5416-01 9 20740294 20740294 A G FOCAD Missense_Mutation p.E116G 0.16 tolerated(0.46) benign(0.438) TCGA-06-5416-01 9 2081995 2081995 C T SMARCA2 Missense_Mutation p.S783L 0.15 benign(0.022) TCGA-06-5416-01 9 2086866 2086866 G A SMARCA2 Missense_Mutation p.R855Q 0.60 benign(0.014) TCGA-06-5416-01 9 20885192 20885192 G A FOCAD Missense_Mutation p.R863Q 0.12 deleterious(0.01) possibly_damaging(0.788) TCGA-06-5416-01 9 21015981 21015981 A G PTPLAD2 Missense_Mutation p.V100A 0.18 deleterious(0.04) benign(0.332) TCGA-06-5416-01 9 21077923 21077923 G A IFNB1 5'UTR 0.53 TCGA-06-5416-01 9 21141288 21141288 C T IFNW1 Silent p.E94E 0.35 TCGA-06-5416-01 9 21141378 21141378 C T IFNW1 Silent p.E64E 0.18 TCGA-06-5416-01 9 21201846 21201846 T G IFNA7 Missense_Mutation p.K107Q 0.16 tolerated(1) benign(0.018) TCGA-06-5416-01 9 21239826 21239826 T C IFNA14 Missense_Mutation p.T37A 0.37 tolerated(1) benign(0.008) TCGA-06-5416-01 9 21304903 21304903 T C IFNA5 Missense_Mutation p.D118G 0.17 deleterious(0.03) probably_damaging(0.923) TCGA-06-5416-01 9 21350859 21350859 C T IFNA6 Missense_Mutation p.A10T 0.19 deleterious(0.05) benign(0.12) TCGA-06-5416-01 9 21409749 21409749 C A IFNA8 3'UTR 0.16 TCGA-06-5416-01 9 21455865 21455865 G T MIR31HG RNA 0.41 TCGA-06-5416-01 9 21481790 21481790 G A IFNE 5'UTR 0.20 TCGA-06-5416-01 9 21854825 21854825 G A MTAP Missense_Mutation p.A216T 0.10 deleterious(0) possibly_damaging(0.63) TCGA-06-5416-01 9 21971026 21971026 C T CDKN2A Missense_Mutation p.G111D 0.16 deleterious(0.05) benign(0.344) TCGA-06-5416-01 9 21974704 21974704 C T CDKN2A Silent p.P41P 0.20 TCGA-06-5416-01 9 22008901 22008901 G T CDKN2B Missense_Mutation p.L18M 0.13 deleterious(0.01) probably_damaging(0.958) TCGA-06-5416-01 9 22451455 22451455 G T DMRTA1 Missense_Mutation p.G354W 0.11 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 23762065 23762065 C A ELAVL2 Missense_Mutation p.K56N 0.20 deleterious(0) possibly_damaging(0.564) TCGA-06-5416-01 9 2644742 2644742 G A VLDLR Missense_Mutation p.E359K 0.12 deleterious(0.02) benign(0.289) TCGA-06-5416-01 9 2645015 2645015 C T VLDLR Silent p.G415G 0.17 TCGA-06-5416-01 9 2646444 2646444 C T VLDLR Missense_Mutation p.A532V 0.35 tolerated(0.07) benign(0.002) TCGA-06-5416-01 9 26920316 26920316 A G PLAA Missense_Mutation p.V369A 0.12 tolerated(0.54) benign(0.004) TCGA-06-5416-01 9 26925939 26925939 C A PLAA Missense_Mutation p.E251D 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 9 26997787 26997787 C A LRRC19 Missense_Mutation p.W178C 0.36 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 27036557 27036557 G T IFT74 Intron 0.17 TCGA-06-5416-01 9 27062867 27062867 C A IFT74 3'UTR 0.15 TCGA-06-5416-01 9 27109613 27109613 C A TEK Missense_Mutation p.L9I 0.16 tolerated(0.25) unknown(0) TCGA-06-5416-01 9 2719019 2719019 C T KCNV2 Missense_Mutation p.A427V 0.18 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 9 27284734 27284734 G A EQTN Missense_Mutation p.S291L 0.33 deleterious_low_confidence(0.01) benign(0.011) TCGA-06-5416-01 9 27330552 27330552 G T MOB3B 3'UTR 0.10 TCGA-06-5416-01 9 27359143 27359143 G A MOB3B Silent p.F170F 0.36 TCGA-06-5416-01 9 27455724 27455724 C T MOB3B 5'UTR 0.15 TCGA-06-5416-01 9 27949182 27949182 G A LINGO2 Silent p.A496A 0.36 TCGA-06-5416-01 9 27949742 27949742 G A LINGO2 Missense_Mutation p.R310C 0.37 deleterious(0.05) possibly_damaging(0.471) TCGA-06-5416-01 9 28888954 28888954 A G MIR873 5'Flank 0.17 TCGA-06-5416-01 9 32405520 32405520 G A ACO1 Missense_Mutation p.A6T 0.39 tolerated(0.52) benign(0) TCGA-06-5416-01 9 32489365 32489365 T G DDX58 Missense_Mutation p.N259T 0.16 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 32526241 32526241 C T DDX58 5'UTR 0.42 TCGA-06-5416-01 9 32543744 32543744 C T TOPORS Missense_Mutation p.R260Q 0.19 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 9 32543763 32543763 C A TOPORS Missense_Mutation p.D254Y 0.14 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 9 325674 325674 C T DOCK8 Silent p.F277F 0.32 TCGA-06-5416-01 9 32631290 32631290 C T TAF1L Missense_Mutation p.A1430T 0.35 tolerated(0.06) benign(0.193) TCGA-06-5416-01 9 32631912 32631912 C T TAF1L Silent p.E1222E 0.39 TCGA-06-5416-01 9 32632620 32632620 C T TAF1L Silent p.K986K 0.39 TCGA-06-5416-01 9 32633905 32633905 C T TAF1L Missense_Mutation p.R558Q 0.34 tolerated(0.08) benign(0.004) TCGA-06-5416-01 9 32634323 32634323 C T TAF1L Missense_Mutation p.E419K 0.18 deleterious(0.03) possibly_damaging(0.905) TCGA-06-5416-01 9 32635562 32635562 C T TAF1L Missense_Mutation p.D6N 0.35 tolerated_low_confidence(0.38) benign(0.001) TCGA-06-5416-01 9 32784238 32784238 C A TMEM215 Silent p.V19V 0.10 TCGA-06-5416-01 9 328143 328143 C T DOCK8 Missense_Mutation p.P339L 0.13 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 32984665 32984665 C T APTX Missense_Mutation p.R245H 0.14 tolerated(0.12) benign(0.035) TCGA-06-5416-01 9 32989901 32989901 A G APTX Intron 0.19 TCGA-06-5416-01 9 33246697 33246697 G A SPINK4 Silent p.T62T 0.15 TCGA-06-5416-01 9 33248516 33248516 G T SPINK4 3'UTR 0.14 TCGA-06-5416-01 9 33294676 33294676 C T NFX1 Missense_Mutation p.S95L 0.34 tolerated(0.11) benign(0.003) TCGA-06-5416-01 9 33351561 33351561 C T NFX1 Missense_Mutation p.R810W 0.97 deleterious(0) possibly_damaging(0.616) TCGA-06-5416-01 9 33369984 33369984 A G NFX1 3'UTR 0.18 TCGA-06-5416-01 9 33385226 33385226 C T AQP7 Missense_Mutation p.G269D 0.25 tolerated(0.07) probably_damaging(0.979) TCGA-06-5416-01 9 33464044 33464044 G A NOL6 Silent p.P965P 0.51 TCGA-06-5416-01 9 33466647 33466647 G A NOL6 Missense_Mutation p.R671C 0.48 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 9 33675377 33675377 C T PTENP1 RNA 0.19 TCGA-06-5416-01 9 33675839 33675839 A G PTENP1 RNA 0.20 TCGA-06-5416-01 9 33900191 33900191 C T UBE2R2 Missense_Mutation p.S95L 0.62 deleterious(0) benign(0.058) TCGA-06-5416-01 9 33917406 33917406 C A UBE2R2 3'UTR 0.14 TCGA-06-5416-01 9 33923290 33923290 A G UBAP2 Silent p.G966G 0.55 TCGA-06-5416-01 9 33998844 33998844 G A UBAP2 Missense_Mutation p.R40C 0.19 deleterious(0) possibly_damaging(0.862) TCGA-06-5416-01 9 34126419 34126419 T G DCAF12 Missense_Mutation p.K4T 0.23 deleterious_low_confidence(0.01) benign(0.307) TCGA-06-5416-01 9 34371228 34371228 C T KIAA1161 Missense_Mutation p.E538K 0.15 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 34371846 34371846 C T KIAA1161 Missense_Mutation p.D332N 0.21 tolerated(0.08) probably_damaging(1) TCGA-06-5416-01 9 34648380 34648380 C T GALT Missense_Mutation p.S205F 0.62 tolerated(0.69) possibly_damaging(0.722) TCGA-06-5416-01 9 34977131 34977131 G A KIAA1045 Missense_Mutation p.A301T 0.50 tolerated(0.62) benign(0.001) TCGA-06-5416-01 9 35043198 35043198 G T C9orf131 Missense_Mutation p.R191I 0.17 tolerated(0.08) possibly_damaging(0.885) TCGA-06-5416-01 9 35043852 35043852 G T C9orf131 Missense_Mutation p.R409I 0.58 tolerated(0.15) possibly_damaging(0.742) TCGA-06-5416-01 9 35044921 35044921 G T C9orf131 Missense_Mutation p.Q765H 0.19 tolerated(0.06) benign(0.005) TCGA-06-5416-01 9 35045721 35045721 G A C9orf131 Missense_Mutation p.R1032H 0.40 tolerated(0.44) benign(0.001) TCGA-06-5416-01 9 35077041 35077041 G A FANCG Missense_Mutation p.A235V 0.53 deleterious(0.02) benign(0.109) TCGA-06-5416-01 9 35091619 35091619 G A PIGO Silent p.L755L 0.35 TCGA-06-5416-01 9 35092073 35092073 C T PIGO Missense_Mutation p.R604H 0.38 tolerated(0.12) possibly_damaging(0.715) TCGA-06-5416-01 9 35092578 35092578 G A PIGO Missense_Mutation p.R436W 0.14 deleterious(0) probably_damaging(0.955) TCGA-06-5416-01 9 35093070 35093070 G A PIGO Missense_Mutation p.S359F 0.27 deleterious(0.02) benign(0.396) TCGA-06-5416-01 9 35093169 35093169 G A PIGO Missense_Mutation p.T326M 0.17 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 35101940 35101940 G A STOML2 Silent p.I101I 0.29 TCGA-06-5416-01 9 35102199 35102199 G T STOML2 Intron 0.14 TCGA-06-5416-01 9 35102259 35102259 G A STOML2 Intron 0.11 TCGA-06-5416-01 9 35105360 35105360 G A FAM214B Missense_Mutation p.S492F 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 35105961 35105961 G A FAM214B Missense_Mutation p.P422S 0.16 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 9 35243356 35243356 A G UNC13B Missense_Mutation p.N155D 0.15 tolerated_low_confidence(1) benign(0) TCGA-06-5416-01 9 35313913 35313913 C T UNC13B Missense_Mutation p.A365V 0.17 tolerated_low_confidence(0.33) benign(0.001) TCGA-06-5416-01 9 35396880 35396880 G T UNC13B Missense_Mutation p.E1077D 0.05 tolerated(0.42) probably_damaging(0.954) TCGA-06-5416-01 9 35404038 35404038 C T UNC13B 3'UTR 0.35 TCGA-06-5416-01 9 35449649 35449649 C T ATP8B5P RNA 0.20 TCGA-06-5416-01 9 35547328 35547328 C T RUSC2 Silent p.S270S 0.18 TCGA-06-5416-01 9 35547714 35547714 T G RUSC2 Missense_Mutation p.L399R 0.17 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 35560483 35560483 C T RUSC2 Silent p.I1282I 0.16 TCGA-06-5416-01 9 35563207 35563207 C T FAM166B Missense_Mutation p.R81H 0.13 tolerated(0.62) benign(0) TCGA-06-5416-01 9 35609159 35609159 G A TESK1 Missense_Mutation p.R434H 0.38 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 9 35616172 35616172 C A CD72 Missense_Mutation p.Q152H 0.18 tolerated(0.06) benign(0.052) TCGA-06-5416-01 9 35616648 35616648 G T CD72 Missense_Mutation p.L101I 0.15 deleterious(0.01) possibly_damaging(0.875) TCGA-06-5416-01 9 35650185 35650185 G A SIT1 Missense_Mutation p.A118V 0.52 tolerated(0.17) benign(0.007) TCGA-06-5416-01 9 35660873 35660873 G A CCDC107 Missense_Mutation p.E181K 0.15 tolerated_low_confidence(0.29) possibly_damaging(0.81) TCGA-06-5416-01 9 35685108 35685108 G A TPM2 Nonsense_Mutation p.R198* 0.10 TCGA-06-5416-01 9 35698157 35698157 C T TLN1 Missense_Mutation p.A2462T 0.50 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 9 35698327 35698327 C T TLN1 Missense_Mutation p.R2455Q 0.12 deleterious(0) probably_damaging(0.978) TCGA-06-5416-01 9 35699389 35699389 C T TLN1 Missense_Mutation p.V2280I 0.17 deleterious(0) probably_damaging(0.959) TCGA-06-5416-01 9 35699984 35699984 T C TLN1 Missense_Mutation p.D2252G 0.31 tolerated(0.08) benign(0.059) TCGA-06-5416-01 9 35704360 35704360 G A TLN1 Missense_Mutation p.R2006C 0.38 deleterious(0.04) possibly_damaging(0.833) TCGA-06-5416-01 9 35710672 35710672 G A TLN1 Silent p.G1404G 0.15 TCGA-06-5416-01 9 35719254 35719254 G A TLN1 Silent p.T571T 0.11 TCGA-06-5416-01 9 35735155 35735155 G T CREB3 Missense_Mutation p.R162I 0.08 deleterious(0) possibly_damaging(0.509) TCGA-06-5416-01 9 35735161 35735161 C T CREB3 Missense_Mutation p.A164V 0.49 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 35736424 35736424 G T CREB3 Missense_Mutation p.D273Y 0.17 deleterious(0.04) probably_damaging(0.98) TCGA-06-5416-01 9 35737478 35737478 T G GBA2 Intron 0.35 TCGA-06-5416-01 9 35806426 35806426 C T NPR2 Missense_Mutation p.R804C 0.55 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 35808544 35808544 C T NPR2 Silent p.G917G 0.17 TCGA-06-5416-01 9 35811717 35811717 C T SPAG8 Missense_Mutation p.G109E 0.13 tolerated_low_confidence(0.26) unknown(0) TCGA-06-5416-01 9 35813727 35813727 C T HINT2 Missense_Mutation p.A46T 0.45 tolerated(0.09) benign(0.178) TCGA-06-5416-01 9 35842603 35842603 C A TMEM8B Missense_Mutation p.F56L 0.16 tolerated(1) probably_damaging(0.97) TCGA-06-5416-01 9 35869882 35869882 C T OR13J1 Missense_Mutation p.V173M 0.34 deleterious(0.01) possibly_damaging(0.463) TCGA-06-5416-01 9 36169670 36169670 C A CCIN Silent p.I57I 0.19 TCGA-06-5416-01 9 36169848 36169848 C T CCIN Nonsense_Mutation p.R117* 0.37 TCGA-06-5416-01 9 36222903 36222903 T C GNE Missense_Mutation p.T533A 0.16 deleterious_low_confidence(0) benign(0.221) TCGA-06-5416-01 9 36233937 36233937 C T GNE Missense_Mutation p.R352H 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 36234121 36234121 C A GNE Nonsense_Mutation p.E291* 0.30 TCGA-06-5416-01 9 36339663 36339663 G T RNF38 3'UTR 0.41 TCGA-06-5416-01 9 36344834 36344834 C A RNF38 Missense_Mutation p.Q460H 0.14 deleterious(0.01) probably_damaging(0.994) TCGA-06-5416-01 9 36375943 36375943 C T RNF38 Missense_Mutation p.R115H 0.12 tolerated(0.21) benign(0.014) TCGA-06-5416-01 9 36643053 36643053 G A MELK Silent p.R298R 0.51 TCGA-06-5416-01 9 368134 368134 C T DOCK8 Missense_Mutation p.P599L 0.15 deleterious(0) probably_damaging(0.971) TCGA-06-5416-01 9 37441251 37441251 T C ZBTB5 Missense_Mutation p.N433S 0.35 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-06-5416-01 9 37441853 37441853 G T ZBTB5 Missense_Mutation p.F232L 0.53 tolerated_low_confidence(1) benign(0.001) TCGA-06-5416-01 9 37588797 37588797 G T TOMM5 3'UTR 0.21 TCGA-06-5416-01 9 37588868 37588868 C T TOMM5 3'UTR 0.28 TCGA-06-5416-01 9 37711388 37711388 C T FRMPD1 Missense_Mutation p.T135M 0.51 tolerated(0.28) benign(0.068) TCGA-06-5416-01 9 37733800 37733800 G T FRMPD1 Missense_Mutation p.R399I 0.16 deleterious(0) benign(0.028) TCGA-06-5416-01 9 37740648 37740648 G A FRMPD1 Missense_Mutation p.S708N 0.16 tolerated(0.48) benign(0.024) TCGA-06-5416-01 9 37745714 37745714 G A FRMPD1 Missense_Mutation p.E1229K 0.48 deleterious_low_confidence(0.04) benign(0.004) TCGA-06-5416-01 9 37761953 37761953 A G TRMT10B Missense_Mutation p.T9A 0.12 tolerated_low_confidence(1) benign(0.001) TCGA-06-5416-01 9 37777782 37777782 C T TRMT10B 3'UTR 0.20 TCGA-06-5416-01 9 37861573 37861573 G A DCAF10 3'UTR 0.10 TCGA-06-5416-01 9 37887975 37887975 G A SLC25A51 Silent p.F191F 0.57 TCGA-06-5416-01 9 38397266 38397266 G A ALDH1B1 Silent p.T507T 0.21 TCGA-06-5416-01 9 3898957 3898957 C T GLIS3 Intron 0.35 TCGA-06-5416-01 9 39086640 39086640 A G CNTNAP3 Intron 0.29 TCGA-06-5416-01 9 39086670 39086670 A C CNTNAP3 Intron 0.60 TCGA-06-5416-01 9 39360849 39360849 C T SPATA31A1 Silent p.A1029A 0.23 TCGA-06-5416-01 9 39888372 39888372 C A SPATA31A2 Silent p.V453V 0.24 TCGA-06-5416-01 9 407023 407023 C A DOCK8 Missense_Mutation p.L1162I 0.16 deleterious(0.04) probably_damaging(0.997) TCGA-06-5416-01 9 40704354 40704354 C A SPATA31A3 Missense_Mutation p.L671M 0.14 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 9 40705784 40705784 C T SPATA31A3 Silent p.G1147G 0.17 TCGA-06-5416-01 9 40716289 40716289 G T FAM74A3 RNA 0.14 TCGA-06-5416-01 9 40772738 40772738 C T ZNF658 Missense_Mutation p.R846K 0.23 deleterious(0.04) probably_damaging(0.99) TCGA-06-5416-01 9 42368536 42368536 C T ANKRD20A2 Missense_Mutation p.A41V 0.09 deleterious(0) possibly_damaging(0.787) TCGA-06-5416-01 9 43625314 43625314 T C SPATA31A6 Missense_Mutation p.R1125G 0.17 tolerated(0.69) benign(0.013) TCGA-06-5416-01 9 43625558 43625558 C A SPATA31A6 Missense_Mutation p.E1043D 0.21 tolerated(1) benign(0.049) TCGA-06-5416-01 9 43626728 43626728 C T SPATA31A6 Silent p.Q653Q 0.08 TCGA-06-5416-01 9 43816726 43816726 G A CNTNAP3B Missense_Mutation p.E278K 0.08 deleterious(0) probably_damaging(0.914) TCGA-06-5416-01 9 463545 463545 C T DOCK8 Missense_Mutation p.R2033C 0.21 deleterious(0.02) possibly_damaging(0.883) TCGA-06-5416-01 9 4662028 4662028 G A SPATA6L Silent p.C16C 0.34 TCGA-06-5416-01 9 4663156 4663156 G A PPAPDC2 Missense_Mutation p.V261I 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 9 4706220 4706220 T G CDC37L1 3'UTR 0.43 TCGA-06-5416-01 9 5054592 5054592 G A JAK2 Missense_Mutation p.R215Q 0.39 deleterious(0.05) benign(0.03) TCGA-06-5416-01 9 5055687 5055687 G A JAK2 Missense_Mutation p.D319N 0.59 tolerated(0.06) probably_damaging(0.955) TCGA-06-5416-01 9 5072541 5072541 G A JAK2 Missense_Mutation p.R564Q 0.16 tolerated(0.07) probably_damaging(0.999) TCGA-06-5416-01 9 5185504 5185504 G A INSL6 Silent p.C33C 0.19 TCGA-06-5416-01 9 5335206 5335206 G T RLN1 3'UTR 0.18 TCGA-06-5416-01 9 5462929 5462929 G A CD274 Missense_Mutation p.E164K 0.30 deleterious(0.03) possibly_damaging(0.819) TCGA-06-5416-01 9 5467846 5467847 - T CD274 Frame_Shift_Ins p.L287Ffs*12 0.16 TCGA-06-5416-01 9 5570070 5570070 C T PDCD1LG2 3'UTR 0.42 TCGA-06-5416-01 9 5756228 5756228 G A KIAA1432 Missense_Mutation p.R570Q 0.35 deleterious(0.03) possibly_damaging(0.585) TCGA-06-5416-01 9 5801254 5801254 G A ERMP1 Silent p.F663F 0.17 TCGA-06-5416-01 9 5921026 5921026 C T KIAA2026 Missense_Mutation p.G1657E 0.35 tolerated(0.11) benign(0.088) TCGA-06-5416-01 9 5929143 5929143 C T KIAA2026 Missense_Mutation p.R800Q 0.22 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 9 5969381 5969381 C A KIAA2026 Nonsense_Mutation p.E284* 0.13 TCGA-06-5416-01 9 5988361 5988361 C T KIAA2026 Missense_Mutation p.A260T 0.28 deleterious(0.04) benign(0.429) TCGA-06-5416-01 9 6015182 6015182 C T RANBP6 Silent p.K142K 0.18 TCGA-06-5416-01 9 6331146 6331146 C A TPD52L3 3'Flank 0.37 TCGA-06-5416-01 9 6413490 6413490 G T UHRF2 5'UTR 0.12 TCGA-06-5416-01 9 6498120 6498120 G T UHRF2 Nonsense_Mutation p.G624* 0.21 TCGA-06-5416-01 9 6500695 6500695 C A UHRF2 Missense_Mutation p.L717I 0.38 deleterious(0.04) benign(0.012) TCGA-06-5416-01 9 6506248 6506248 G A UHRF2 3'UTR 0.53 TCGA-06-5416-01 9 6554678 6554678 G T GLDC Missense_Mutation p.P769H 0.10 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 69120822 69120822 C T PGM5P2 RNA 0.16 TCGA-06-5416-01 9 69391158 69391158 T G ANKRD20A4 Missense_Mutation p.N222K 0.13 tolerated(0.32) benign(0.258) TCGA-06-5416-01 9 6984319 6984319 G A KDM4C Silent p.R423R 0.18 TCGA-06-5416-01 9 6986483 6986483 G T KDM4C Missense_Mutation p.E498D 0.18 tolerated(0.34) benign(0.002) TCGA-06-5416-01 9 70177576 70177576 G T FOXD4L5 Silent p.A136A 0.20 TCGA-06-5416-01 9 711367 711367 G A KANK1 Missense_Mutation p.G201S 0.18 tolerated(0.3) benign(0.171) TCGA-06-5416-01 9 7128203 7128203 C A KDM4C Silent p.S916S 0.11 TCGA-06-5416-01 9 71396092 71396092 G A FAM122A 3'UTR 0.35 TCGA-06-5416-01 9 71668170 71668170 C A FXN Silent p.S126S 0.19 TCGA-06-5416-01 9 71831375 71831375 C T TJP2 Missense_Mutation p.L110F 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 71840318 71840318 C A TJP2 Missense_Mutation p.L382I 0.16 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 9 71986425 71986425 T G FAM189A2 Missense_Mutation p.F8C 0.17 deleterious(0) unknown(0) TCGA-06-5416-01 9 71992294 71992294 C A FAM189A2 Silent p.L87L 0.21 TCGA-06-5416-01 9 71992559 71992559 G T FAM189A2 Missense_Mutation p.E131D 0.18 deleterious(0.02) possibly_damaging(0.748) TCGA-06-5416-01 9 72000737 72000737 G A FAM189A2 Missense_Mutation p.E244K 0.68 tolerated(0.57) benign(0.066) TCGA-06-5416-01 9 72003170 72003170 C T FAM189A2 Missense_Mutation p.S318L 0.71 tolerated(0.71) benign(0.001) TCGA-06-5416-01 9 72067133 72067133 C A APBA1 Missense_Mutation p.D625Y 0.19 tolerated(0.06) probably_damaging(0.99) TCGA-06-5416-01 9 72131268 72131268 C T APBA1 Missense_Mutation p.D287N 0.21 tolerated_low_confidence(0.13) possibly_damaging(0.45) TCGA-06-5416-01 9 72131431 72131431 G A APBA1 Silent p.G232G 0.26 TCGA-06-5416-01 9 72338470 72338470 C T PTAR1 Missense_Mutation p.R240H 0.22 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 9 72785396 72785396 G T MAMDC2 Missense_Mutation p.E500D 0.22 tolerated(0.59) benign(0.002) TCGA-06-5416-01 9 72833369 72833369 T C MAMDC2 Missense_Mutation p.Y590H 0.24 tolerated(0.08) probably_damaging(1) TCGA-06-5416-01 9 72874031 72874031 C T SMC5 Missense_Mutation p.P13S 0.14 tolerated_low_confidence(0.72) benign(0) TCGA-06-5416-01 9 73152208 73152208 C T TRPM3 Missense_Mutation p.R1262H 0.25 tolerated(0.08) probably_damaging(0.961) TCGA-06-5416-01 9 73206046 73206046 G T TRPM3 Missense_Mutation p.L1030I 0.17 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 9 73218348 73218348 G A TRPM3 Silent p.I890I 0.20 TCGA-06-5416-01 9 73235024 73235024 G A TRPM3 Silent p.D687D 0.17 TCGA-06-5416-01 9 74319593 74319593 C T TMEM2 Missense_Mutation p.V1038I 0.21 tolerated(0.46) benign(0.009) TCGA-06-5416-01 9 74489782 74489782 C A ABHD17B Missense_Mutation p.R72I 0.16 deleterious(0.03) possibly_damaging(0.845) TCGA-06-5416-01 9 75315496 75315496 G T TMC1 Missense_Mutation p.R100I 0.22 deleterious(0) benign(0.032) TCGA-06-5416-01 9 75315508 75315508 C T TMC1 Missense_Mutation p.A104V 0.68 deleterious(0.01) benign(0.313) TCGA-06-5416-01 9 75406889 75406889 G A TMC1 Missense_Mutation p.A438T 0.66 tolerated(0.82) benign(0.008) TCGA-06-5416-01 9 75520880 75520880 C T ALDH1A1 Missense_Mutation p.R476K 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 75524626 75524626 A G ALDH1A1 Missense_Mutation p.V417A 0.61 tolerated(0.09) possibly_damaging(0.837) TCGA-06-5416-01 9 75545806 75545806 G T ALDH1A1 Missense_Mutation p.L101M 0.24 tolerated(0.13) probably_damaging(0.929) TCGA-06-5416-01 9 75555071 75555071 C T ALDH1A1 Missense_Mutation p.G55E 0.13 deleterious(0) probably_damaging(0.985) TCGA-06-5416-01 9 75785099 75785099 A C ANXA1 3'UTR 0.18 TCGA-06-5416-01 9 77257378 77257378 C T RORB Missense_Mutation p.A95V 0.22 deleterious(0.01) possibly_damaging(0.714) TCGA-06-5416-01 9 77377959 77377959 G A TRPM6 Missense_Mutation p.H1210Y 0.21 deleterious(0.02) probably_damaging(0.99) TCGA-06-5416-01 9 77411743 77411743 A G TRPM6 Missense_Mutation p.S769P 0.23 tolerated(0.05) probably_damaging(0.99) TCGA-06-5416-01 9 77418708 77418708 A G TRPM6 Splice_Site p.X577_splice 0.18 TCGA-06-5416-01 9 77423068 77423068 C T TRPM6 Missense_Mutation p.R507Q 0.23 tolerated(0.08) benign(0.137) TCGA-06-5416-01 9 77454988 77454988 C T TRPM6 Missense_Mutation p.A166T 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 77692411 77692411 A C NMRK1 Missense_Mutation p.F39V 0.19 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 9 77761608 77761608 G A OSTF1 Missense_Mutation p.R199Q 0.23 tolerated(0.16) benign(0.032) TCGA-06-5416-01 9 78943035 78943035 C T PCSK5 Missense_Mutation p.P1457S 0.22 tolerated(0.76) benign(0.001) TCGA-06-5416-01 9 78953239 78953239 C T PCSK5 Silent p.C1587C 0.13 TCGA-06-5416-01 9 79003475 79003475 G T RFK Missense_Mutation p.S111Y 0.26 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 9 79320836 79320836 C A PRUNE2 Missense_Mutation p.E2118D 0.69 tolerated(0.52) benign(0.342) TCGA-06-5416-01 9 79441517 79441517 C T PRUNE2 Missense_Mutation p.E214K 0.20 deleterious(0) probably_damaging(0.955) TCGA-06-5416-01 9 79461517 79461517 C T PRUNE2 Missense_Mutation p.R141Q 0.24 tolerated(1) benign(0.002) TCGA-06-5416-01 9 79843167 79843167 G A VPS13A Missense_Mutation p.A528T 0.25 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 79852936 79852936 T C VPS13A Silent p.D538D 0.26 TCGA-06-5416-01 9 79910753 79910753 G T VPS13A Missense_Mutation p.R1268L 0.15 deleterious(0.01) benign(0.014) TCGA-06-5416-01 9 80866932 80866932 G A CEP78 Missense_Mutation p.R394H 0.20 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 9 82335115 82335115 C T TLE4 Missense_Mutation p.A582V 0.63 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 84202610 84202610 C T TLE1 Missense_Mutation p.D655N 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 9 84202705 84202705 T C TLE1 Missense_Mutation p.D623G 0.76 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 84205968 84205968 C A TLE1 Splice_Site p.X528_splice 0.23 TCGA-06-5416-01 9 84235376 84235376 C T TLE1 Missense_Mutation p.D231N 0.25 tolerated(0.06) benign(0.296) TCGA-06-5416-01 9 84534511 84534511 A C SPATA31D5P RNA 0.18 TCGA-06-5416-01 9 84603886 84603886 G A SPATA31D1 Silent p.S51S 0.21 TCGA-06-5416-01 9 84606699 84606699 C T SPATA31D1 Silent p.F438F 0.23 TCGA-06-5416-01 9 84609553 84609553 C T SPATA31D1 Nonsense_Mutation p.R1390* 0.21 TCGA-06-5416-01 9 8500769 8500769 G A PTPRD Nonsense_Mutation p.R705* 0.19 TCGA-06-5416-01 9 8501014 8501014 G A PTPRD Missense_Mutation p.S623F 0.18 deleterious(0) unknown(0) TCGA-06-5416-01 9 8518099 8518099 G A PTPRD Missense_Mutation p.S431L 0.18 deleterious(0.01) probably_damaging(0.995) TCGA-06-5416-01 9 8521415 8521415 C A PTPRD Missense_Mutation p.D275Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 85926816 85926816 G A FRMD3 Silent p.I253I 0.14 TCGA-06-5416-01 9 86482670 86482670 T C KIF27 Missense_Mutation p.I955V 0.20 deleterious(0.04) benign(0.424) TCGA-06-5416-01 9 86518349 86518349 C T KIF27 Missense_Mutation p.E362K 0.17 deleterious(0.01) probably_damaging(0.968) TCGA-06-5416-01 9 86523411 86523411 G T KIF27 Missense_Mutation p.S152Y 0.46 deleterious(0) possibly_damaging(0.865) TCGA-06-5416-01 9 86586836 86586836 C T HNRNPK Missense_Mutation p.R305Q 0.65 deleterious(0.04) benign(0.015) TCGA-06-5416-01 9 86590464 86590464 G A HNRNPK Intron 0.20 TCGA-06-5416-01 9 87342858 87342858 G A NTRK2 Nonsense_Mutation p.W381* 0.22 TCGA-06-5416-01 9 87636416 87636416 C A NTRK2 3'UTR 0.20 TCGA-06-5416-01 9 88204545 88204545 G A AGTPBP1 Missense_Mutation p.R834W 0.15 deleterious(0) probably_damaging(0.944) TCGA-06-5416-01 9 88236177 88236177 T G AGTPBP1 Missense_Mutation p.E640A 0.25 deleterious(0.01) possibly_damaging(0.525) TCGA-06-5416-01 9 88631577 88631577 G T NAA35 Missense_Mutation p.K564N 0.69 tolerated(0.22) benign(0.168) TCGA-06-5416-01 9 88650341 88650341 C T GOLM1 Silent p.E319E 0.23 TCGA-06-5416-01 9 88655733 88655733 C T GOLM1 Missense_Mutation p.R173Q 0.65 tolerated(0.14) possibly_damaging(0.776) TCGA-06-5416-01 9 88692435 88692435 C A GOLM1 Missense_Mutation p.K67N 0.20 deleterious(0) possibly_damaging(0.895) TCGA-06-5416-01 9 88925650 88925650 C A ZCCHC6 Nonsense_Mutation p.E1117* 0.19 TCGA-06-5416-01 9 88937327 88937327 C A ZCCHC6 Missense_Mutation p.D981Y 0.15 deleterious(0) probably_damaging(0.99) TCGA-06-5416-01 9 90114015 90114015 A G DAPK1 Missense_Mutation p.N8S 0.63 tolerated(0.26) benign(0.009) TCGA-06-5416-01 9 90219880 90219880 C T DAPK1 Missense_Mutation p.A25V 0.20 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 9 90266476 90266476 G A DAPK1 Missense_Mutation p.R554Q 0.25 deleterious(0.01) probably_damaging(0.993) TCGA-06-5416-01 9 90272999 90272999 G A DAPK1 Missense_Mutation p.R627Q 0.21 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 9 90283585 90283585 G A DAPK1 Missense_Mutation p.R666Q 0.18 deleterious(0.03) benign(0.014) TCGA-06-5416-01 9 90311930 90311930 G A DAPK1 Missense_Mutation p.D808N 0.22 deleterious(0) benign(0.358) TCGA-06-5416-01 9 90401688 90401688 T G CTSL3P RNA 0.19 TCGA-06-5416-01 9 91262277 91262277 C T RP13-60M5.2 RNA 0.17 TCGA-06-5416-01 9 91653105 91653105 C A SHC3 Missense_Mutation p.D487Y 0.05 tolerated(0.06) possibly_damaging(0.805) TCGA-06-5416-01 9 91926157 91926157 C T CKS2 5'UTR 0.78 TCGA-06-5416-01 9 91964708 91964708 G A SECISBP2 Missense_Mutation p.E586K 0.25 tolerated(0.14) benign(0.009) TCGA-06-5416-01 9 92007362 92007362 C A SEMA4D Nonsense_Mutation p.E200* 0.23 TCGA-06-5416-01 9 93375732 93375732 G A DIRAS2 Silent p.S126S 0.17 TCGA-06-5416-01 9 93606387 93606387 G A SYK Silent p.E69E 0.19 TCGA-06-5416-01 9 93650036 93650036 G T SYK Missense_Mutation p.Q529H 0.17 tolerated(0.11) possibly_damaging(0.742) TCGA-06-5416-01 9 93657847 93657847 C T SYK Missense_Mutation p.R625W 0.59 deleterious(0.01) probably_damaging(1) TCGA-06-5416-01 9 94171928 94171928 G A NFIL3 Silent p.F363F 0.24 TCGA-06-5416-01 9 94484951 94484951 G A ROR2 3'UTR 0.16 TCGA-06-5416-01 9 94486806 94486806 C T ROR2 Missense_Mutation p.R657H 0.19 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 94488923 94488923 C T ROR2 Missense_Mutation p.R429Q 0.21 tolerated(0.07) benign(0.137) TCGA-06-5416-01 9 94495639 94495639 G A ROR2 Silent p.F234F 0.14 TCGA-06-5416-01 9 94794803 94794803 C A SPTLC1 Nonsense_Mutation p.E456* 0.22 TCGA-06-5416-01 9 94797117 94797117 C A SPTLC1 Nonsense_Mutation p.E435* 0.21 TCGA-06-5416-01 9 94809534 94809534 C T SPTLC1 Missense_Mutation p.G334E 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 9 94973097 94973097 C A IARS Missense_Mutation p.D1261Y 0.17 deleterious_low_confidence(0) possibly_damaging(0.649) TCGA-06-5416-01 9 95033827 95033827 T C IARS Silent p.G367G 0.23 TCGA-06-5416-01 9 95036714 95036714 G A IARS Silent p.F328F 0.45 TCGA-06-5416-01 9 95050144 95050144 C T IARS Missense_Mutation p.A109T 0.69 tolerated(0.4) benign(0.03) TCGA-06-5416-01 9 95076673 95076673 G A NOL8 Missense_Mutation p.S745L 0.24 tolerated(0.28) benign(0.003) TCGA-06-5416-01 9 95077145 95077146 - T NOL8 Frame_Shift_Ins p.S588Ifs*9 0.13 TCGA-06-5416-01 9 95077211 95077211 A C NOL8 Missense_Mutation p.L566V 0.68 tolerated(0.44) benign(0.014) TCGA-06-5416-01 9 95179705 95179705 G A OMD Missense_Mutation p.R46C 0.64 tolerated(0.08) possibly_damaging(0.517) TCGA-06-5416-01 9 95222018 95222018 C T ASPN Missense_Mutation p.E281K 0.40 deleterious(0.01) possibly_damaging(0.835) TCGA-06-5416-01 9 95272235 95272235 C A ECM2 Nonsense_Mutation p.E418* 0.24 TCGA-06-5416-01 9 95274318 95274318 G A ECM2 Missense_Mutation p.S382L 0.18 tolerated(0.09) benign(0.219) TCGA-06-5416-01 9 95277066 95277066 G A ECM2 Missense_Mutation p.P301S 0.19 tolerated(0.17) benign(0.117) TCGA-06-5416-01 9 95277306 95277306 C A ECM2 Nonsense_Mutation p.E221* 0.61 TCGA-06-5416-01 9 95599912 95599912 G A ANKRD19P RNA 0.56 TCGA-06-5416-01 9 95599955 95599955 C A ANKRD19P RNA 0.20 TCGA-06-5416-01 9 95796900 95796900 C T FGD3 Silent p.S621S 0.42 TCGA-06-5416-01 9 95888699 95888699 G A NINJ1 Silent p.I99I 0.56 TCGA-06-5416-01 9 96000548 96000548 G A WNK2 Missense_Mutation p.D423N 0.58 unknown(0) TCGA-06-5416-01 9 96318751 96318751 G A FAM120A Missense_Mutation p.G788R 0.68 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 9 96860543 96860543 C T PTPDC1 Silent p.V563V 0.26 TCGA-06-5416-01 9 97321159 97321159 C T FBP2 3'UTR 0.54 TCGA-06-5416-01 9 97349635 97349635 A G FBP2 Missense_Mutation p.V96A 0.20 deleterious(0.04) possibly_damaging(0.811) TCGA-06-5416-01 9 97382718 97382718 C T FBP1 Missense_Mutation p.V76I 0.17 tolerated(0.19) benign(0.006) TCGA-06-5416-01 9 97522209 97522209 G A C9orf3 Silent p.E48E 0.22 TCGA-06-5416-01 9 97522446 97522446 C T C9orf3 Silent p.S127S 0.23 TCGA-06-5416-01 9 97555056 97555056 G A C9orf3 Missense_Mutation p.S325N 0.21 tolerated(0.12) benign(0.111) TCGA-06-5416-01 9 977156 977156 A G DMRT3 Missense_Mutation p.D52G 0.33 deleterious(0.01) probably_damaging(0.99) TCGA-06-5416-01 9 97873833 97873833 G A FANCC Missense_Mutation p.S414L 0.21 tolerated(0.06) possibly_damaging(0.455) TCGA-06-5416-01 9 98215882 98215882 G A PTCH1 Silent p.G1109G 0.26 TCGA-06-5416-01 9 98270502 98270502 C T PTCH1 Missense_Mutation p.D48N 0.69 deleterious(0) possibly_damaging(0.58) TCGA-06-5416-01 9 99122503 99122503 G A SLC35D2 Silent p.L94L 0.14 TCGA-06-5416-01 9 99228027 99228027 G A HABP4 Missense_Mutation p.G237E 0.26 deleterious(0.03) possibly_damaging(0.521) TCGA-06-5416-01 9 99228033 99228033 G A HABP4 Missense_Mutation p.R239Q 0.37 deleterious(0.01) possibly_damaging(0.691) TCGA-06-5416-01 9 99277987 99277987 G T CDC14B Intron 0.30 TCGA-06-5416-01 9 99521949 99521949 G A ZNF510 Missense_Mutation p.T388M 0.69 tolerated(0.12) benign(0.002) TCGA-06-5416-01 9 99522029 99522029 C T ZNF510 Silent p.E361E 0.20 TCGA-06-5416-01 9 99580191 99580191 T G ZNF782 3'UTR 0.24 TCGA-06-5416-01 9 99580955 99580955 G A ZNF782 Silent p.F450F 0.22 TCGA-06-5416-01 9 99581240 99581240 T C ZNF782 Silent p.V355V 0.20 TCGA-06-5416-01 9 99694114 99694114 C A NUTM2G Missense_Mutation p.L43I 0.15 tolerated(0.19) probably_damaging(0.999) TCGA-06-5416-01 9 99735171 99735171 G T HIATL2 Missense_Mutation p.F56L 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 100088288 100088288 C T CSTF2 Missense_Mutation p.R443C 0.73 tolerated_low_confidence(0.06) probably_damaging(0.982) TCGA-06-5416-01 X 100104389 100104389 C A NOX1 Missense_Mutation p.E441D 0.31 tolerated(1) benign(0.209) TCGA-06-5416-01 X 100118535 100118535 C T NOX1 Missense_Mutation p.S64N 0.21 deleterious(0) benign(0.073) TCGA-06-5416-01 X 100169124 100169124 C T XKRX 3'UTR 0.28 TCGA-06-5416-01 X 100228733 100228733 C T ARL13A Nonsense_Mutation p.R19* 0.25 TCGA-06-5416-01 X 100242442 100242442 C T ARL13A Missense_Mutation p.R184C 0.24 deleterious(0.05) probably_damaging(0.996) TCGA-06-5416-01 X 100297059 100297059 C T TRMT2B Missense_Mutation p.G74R 0.18 tolerated(0.2) benign(0.01) TCGA-06-5416-01 X 100349586 100349586 C T TMEM35 Nonsense_Mutation p.R49* 0.30 TCGA-06-5416-01 X 100382519 100382519 C T CENPI Silent p.L313L 0.26 TCGA-06-5416-01 X 100416529 100416529 G A CENPI Missense_Mutation p.E703K 0.25 tolerated(0.26) benign(0.007) TCGA-06-5416-01 X 100538452 100538452 C T TAF7L Missense_Mutation p.A175T 0.56 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 100630234 100630234 T C BTK Silent p.R13R 0.33 TCGA-06-5416-01 X 100630254 100630254 C T BTK Missense_Mutation p.E7K 0.24 tolerated(0.12) probably_damaging(0.998) TCGA-06-5416-01 X 10085429 10085429 G T WWC3 Missense_Mutation p.D444Y 0.16 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 X 100871656 100871656 C T ARMCX6 5'UTR 0.25 TCGA-06-5416-01 X 100880953 100880953 C T ARMCX3 Silent p.F328F 0.26 TCGA-06-5416-01 X 10102496 10102496 G T WWC3 Missense_Mutation p.D875Y 0.27 deleterious(0) probably_damaging(0.952) TCGA-06-5416-01 X 101096732 101096732 G A NXF5 Missense_Mutation p.R52W 0.30 tolerated(0.08) benign(0.278) TCGA-06-5416-01 X 101139622 101139622 G A ZMAT1 Silent p.V259V 0.62 TCGA-06-5416-01 X 101153162 101153162 T A ZMAT1 Missense_Mutation p.Y87F 0.26 deleterious(0.03) benign(0.051) TCGA-06-5416-01 X 101396088 101396088 G A TCEAL6 Silent p.S72S 0.32 TCGA-06-5416-01 X 101572081 101572081 G T NXF2 Missense_Mutation p.D69Y 0.16 deleterious(0.02) possibly_damaging(0.659) TCGA-06-5416-01 X 101576727 101576727 G A NXF2 Missense_Mutation p.R408Q 0.12 deleterious(0.02) probably_damaging(0.996) TCGA-06-5416-01 X 101581398 101581398 C T NXF2 Silent p.I617I 0.19 TCGA-06-5416-01 X 101623464 101623464 G A NXF2B Missense_Mutation p.R238C 0.10 deleterious(0.04) benign(0.293) TCGA-06-5416-01 X 10163115 10163115 G A CLCN4 Missense_Mutation p.E137K 0.23 tolerated(0.07) benign(0.24) TCGA-06-5416-01 X 101911664 101911664 C A GPRASP1 Missense_Mutation p.F941L 0.60 tolerated(0.15) benign(0.016) TCGA-06-5416-01 X 101971622 101971622 C T GPRASP2 Missense_Mutation p.R609W 0.58 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 X 101971993 101971993 G A GPRASP2 Silent p.A732A 0.22 TCGA-06-5416-01 X 101972245 101972245 G T GPRASP2 Missense_Mutation p.E816D 0.24 deleterious(0.01) probably_damaging(0.998) TCGA-06-5416-01 X 102004324 102004324 G A BHLHB9 Missense_Mutation p.S134N 0.07 tolerated(0.36) benign(0.003) TCGA-06-5416-01 X 102339424 102339424 C T NXF3 Splice_Site p.X66_splice 0.22 TCGA-06-5416-01 X 102471079 102471079 G A BEX4 Intron 0.25 TCGA-06-5416-01 X 102471498 102471498 T G BEX4 3'UTR 0.31 TCGA-06-5416-01 X 102529182 102529182 C T TCEAL5 Missense_Mutation p.E104K 0.21 tolerated(1) probably_damaging(0.99) TCGA-06-5416-01 X 102564627 102564627 C T BEX2 Missense_Mutation p.R125K 0.61 tolerated(0.09) probably_damaging(0.999) TCGA-06-5416-01 X 102755075 102755075 T G RAB40A Missense_Mutation p.T204P 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-06-5416-01 X 102864279 102864279 C T TCEAL3 Missense_Mutation p.A96V 0.64 tolerated(0.06) probably_damaging(0.977) TCGA-06-5416-01 X 102864513 102864513 C T TCEAL3 Missense_Mutation p.A174V 0.09 tolerated(0.46) benign(0.05) TCGA-06-5416-01 X 102864656 102864656 G A TCEAL3 3'UTR 0.29 TCGA-06-5416-01 X 102931793 102931793 G T MORF4L2 Missense_Mutation p.L55I 0.29 tolerated(0.42) benign(0.105) TCGA-06-5416-01 X 103267882 103267882 G A H2BFWT Silent p.I117I 0.29 TCGA-06-5416-01 X 10417511 10417511 G A MID1 Missense_Mutation p.A634V 0.28 tolerated(0.48) benign(0.005) TCGA-06-5416-01 X 10422947 10422947 G A MID1 Missense_Mutation p.R540W 0.24 deleterious(0.04) probably_damaging(0.989) TCGA-06-5416-01 X 10437741 10437741 G A MID1 Silent p.V427V 0.61 TCGA-06-5416-01 X 104464851 104464851 G T TEX13A Silent p.R77R 0.24 TCGA-06-5416-01 X 104984603 104984603 G A IL1RAPL2 Missense_Mutation p.E323K 0.27 deleterious(0.04) probably_damaging(0.969) TCGA-06-5416-01 X 105150442 105150442 C T NRK Missense_Mutation p.T294M 0.27 tolerated(0.97) benign(0.001) TCGA-06-5416-01 X 105181547 105181547 C A NRK Missense_Mutation p.P1259T 0.18 tolerated(0.06) benign(0.154) TCGA-06-5416-01 X 105190407 105190407 T C NRK Missense_Mutation p.L1436P 0.27 deleterious(0) benign(0.002) TCGA-06-5416-01 X 105199613 105199613 C T NRK 3'UTR 0.33 TCGA-06-5416-01 X 105280600 105280600 G A SERPINA7 Silent p.V150V 0.64 TCGA-06-5416-01 X 105449858 105449858 C A MUM1L1 Missense_Mutation p.L145I 0.64 tolerated(0.19) benign(0.207) TCGA-06-5416-01 X 105450673 105450673 A C MUM1L1 Missense_Mutation p.K416N 0.15 tolerated(0.17) probably_damaging(0.999) TCGA-06-5416-01 X 105451136 105451136 C T MUM1L1 Silent p.L571L 0.38 TCGA-06-5416-01 X 105883937 105883937 C T CXorf57 Silent p.G630G 0.19 TCGA-06-5416-01 X 105921626 105921626 C T CXorf57 3'UTR 0.62 TCGA-06-5416-01 X 106034364 106034364 C A RNF128 Silent p.S351S 0.07 TCGA-06-5416-01 X 106083986 106083986 G T TBC1D8B Nonsense_Mutation p.E531* 0.29 TCGA-06-5416-01 X 106083993 106083993 A C TBC1D8B Missense_Mutation p.E533A 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 106116882 106116882 C A TBC1D8B Missense_Mutation p.A1017D 0.05 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 X 106171782 106171782 C T CLDN2 Silent p.C108C 0.22 TCGA-06-5416-01 X 106172044 106172044 G A CLDN2 Missense_Mutation p.D196N 0.28 tolerated(0.56) benign(0.006) TCGA-06-5416-01 X 106229262 106229262 G T MORC4 Silent p.V159V 0.25 TCGA-06-5416-01 X 106486580 106486580 A T PIH1D3 3'UTR 0.27 TCGA-06-5416-01 X 106773676 106773676 G T FRMPD3 Missense_Mutation p.Q95H 0.20 deleterious(0.01) possibly_damaging(0.529) TCGA-06-5416-01 X 106796080 106796080 C T FRMPD3 Missense_Mutation p.A222V 0.24 deleterious(0.01) probably_damaging(0.941) TCGA-06-5416-01 X 106840673 106840673 G A FRMPD3 Missense_Mutation p.D555N 0.35 tolerated(0.08) benign(0.015) TCGA-06-5416-01 X 106841265 106841265 G A FRMPD3 Missense_Mutation p.R752Q 0.25 deleterious(0.04) possibly_damaging(0.516) TCGA-06-5416-01 X 106845450 106845450 G A FRMPD3 Missense_Mutation p.R1427H 0.36 deleterious(0.03) benign(0.015) TCGA-06-5416-01 X 106960004 106960004 G A TSC22D3 Intron 0.22 TCGA-06-5416-01 X 107084062 107084062 G A MID2 Missense_Mutation p.R56H 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-06-5416-01 X 107224134 107224134 G T TEX13B 3'UTR 0.17 TCGA-06-5416-01 X 107224907 107224907 A C TEX13B Missense_Mutation p.F151V 0.29 tolerated(0.08) benign(0.002) TCGA-06-5416-01 X 107224959 107224959 C A TEX13B Missense_Mutation p.E133D 0.30 deleterious(0) benign(0.007) TCGA-06-5416-01 X 107225249 107225249 C T TEX13B Missense_Mutation p.E37K 0.24 deleterious(0.04) possibly_damaging(0.897) TCGA-06-5416-01 X 107320515 107320515 G A VSIG1 Silent p.S392S 0.20 TCGA-06-5416-01 X 107402936 107402936 A C COL4A6 Missense_Mutation p.F1524C 0.25 possibly_damaging(0.726) TCGA-06-5416-01 X 107408664 107408664 G T COL4A6 Silent p.S1249S 0.55 TCGA-06-5416-01 X 107433662 107433662 T C COL4A6 Silent p.E463E 0.29 TCGA-06-5416-01 X 107457391 107457391 G A COL4A6 Missense_Mutation p.A132V 0.52 unknown(0) TCGA-06-5416-01 X 107682648 107682648 G T COL4A6 5'UTR 0.50 TCGA-06-5416-01 X 107840719 107840719 G A COL4A5 Missense_Mutation p.G567E 0.24 unknown(0) TCGA-06-5416-01 X 107845195 107845195 C T COL4A5 Missense_Mutation p.L708F 0.25 unknown(0) TCGA-06-5416-01 X 107920775 107920775 G A COL4A5 Missense_Mutation p.G1285D 0.54 possibly_damaging(0.839) TCGA-06-5416-01 X 107930869 107930869 A C COL4A5 Missense_Mutation p.E1491D 0.58 benign(0.078) TCGA-06-5416-01 X 107977383 107977383 C T IRS4 Missense_Mutation p.R731H 0.31 tolerated(0.52) unknown(0) TCGA-06-5416-01 X 107978708 107978708 C T IRS4 Silent p.E289E 0.23 TCGA-06-5416-01 X 108887166 108887166 T C ACSL4 3'UTR 0.55 TCGA-06-5416-01 X 108911413 108911413 C T ACSL4 Missense_Mutation p.R452Q 0.57 deleterious(0.05) probably_damaging(0.954) TCGA-06-5416-01 X 108926685 108926685 T A ACSL4 Missense_Mutation p.I11F 0.24 tolerated(0.16) benign(0) TCGA-06-5416-01 X 109507798 109507798 C T AMMECR1 Missense_Mutation p.R168Q 0.06 deleterious(0.05) benign(0.121) TCGA-06-5416-01 X 109561253 109561253 G A AMMECR1 Missense_Mutation p.S16L 0.22 deleterious_low_confidence(0) possibly_damaging(0.706) TCGA-06-5416-01 X 109698715 109698715 C A RGAG1 3'UTR 0.27 TCGA-06-5416-01 X 109924866 109924866 C A CHRDL1 Missense_Mutation p.G334C 0.07 deleterious(0.04) benign(0.376) TCGA-06-5416-01 X 110439124 110439124 A C PAK3 Missense_Mutation p.K425Q 0.58 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 110491840 110491840 C T CAPN6 Missense_Mutation p.E481K 0.62 tolerated(0.18) possibly_damaging(0.881) TCGA-06-5416-01 X 110491977 110491977 C T CAPN6 Missense_Mutation p.R435H 0.23 deleterious(0) probably_damaging(0.954) TCGA-06-5416-01 X 110496309 110496309 C A CAPN6 Nonsense_Mutation p.G145* 0.26 TCGA-06-5416-01 X 110961485 110961485 G T ALG13 Missense_Mutation p.K411N 0.55 tolerated(0.06) possibly_damaging(0.563) TCGA-06-5416-01 X 110970920 110970920 G A ALG13 Silent p.Q723Q 0.34 TCGA-06-5416-01 X 111000884 111000884 G A ALG13 Silent p.E1014E 0.21 TCGA-06-5416-01 X 111019725 111019725 G A TRPC5 Missense_Mutation p.A913V 0.63 tolerated_low_confidence(0.34) benign(0.001) TCGA-06-5416-01 X 111020092 111020092 G A TRPC5 Missense_Mutation p.R791W 0.26 deleterious(0) possibly_damaging(0.462) TCGA-06-5416-01 X 111025183 111025183 G A TRPC5 Missense_Mutation p.R694C 0.05 deleterious(0.01) benign(0.04) TCGA-06-5416-01 X 111155953 111155953 C T TRPC5 Missense_Mutation p.E156K 0.24 deleterious(0) probably_damaging(0.945) TCGA-06-5416-01 X 11139100 11139100 C T HCCS Missense_Mutation p.R199C 0.63 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 X 11157418 11157418 G A ARHGAP6 Silent p.A830A 0.42 TCGA-06-5416-01 X 11161960 11161960 C T ARHGAP6 Intron 0.32 TCGA-06-5416-01 X 111698553 111698553 T C ZCCHC16 Silent p.T199T 0.25 TCGA-06-5416-01 X 111914391 111914391 G A LHFPL1 Silent p.I76I 0.28 TCGA-06-5416-01 X 112022407 112022407 G A AMOT Missense_Mutation p.A992V 0.10 unknown(0) TCGA-06-5416-01 X 11316731 11316731 T C AMELX Missense_Mutation p.S84P 0.21 tolerated(0.24) probably_damaging(0.982) TCGA-06-5416-01 X 114141418 114141418 G A HTR2C Missense_Mutation p.E273K 0.24 tolerated(0.75) benign(0.067) TCGA-06-5416-01 X 114141518 114141518 A C HTR2C Missense_Mutation p.E306A 0.28 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 X 114249069 114249069 T G IL13RA2 Silent p.I105I 0.25 TCGA-06-5416-01 X 114250260 114250260 G A IL13RA2 Silent p.Y73Y 0.21 TCGA-06-5416-01 X 114357657 114357657 G A LRCH2 Nonsense_Mutation p.R650* 0.32 TCGA-06-5416-01 X 114540873 114540873 C T LUZP4 Missense_Mutation p.S149F 0.27 tolerated(0.05) probably_damaging(0.955) TCGA-06-5416-01 X 114877789 114877789 G T PLS3 Missense_Mutation p.E384D 0.30 tolerated(0.51) benign(0.007) TCGA-06-5416-01 X 114883987 114883987 G T PLS3 3'UTR 0.18 TCGA-06-5416-01 X 115303866 115303866 C A AGTR2 Silent p.L111L 0.28 TCGA-06-5416-01 X 117079629 117079629 C T KLHL13 Intron 0.23 TCGA-06-5416-01 X 117480398 117480398 G A WDR44 5'UTR 0.35 TCGA-06-5416-01 X 117526718 117526718 C A WDR44 Missense_Mutation p.L104M 0.57 deleterious_low_confidence(0.05) benign(0.323) TCGA-06-5416-01 X 117543512 117543512 G T WDR44 Missense_Mutation p.D532Y 0.32 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 117680003 117680003 C T DOCK11 Missense_Mutation p.S161F 0.23 deleterious(0.03) probably_damaging(0.991) TCGA-06-5416-01 X 117788594 117788594 C A DOCK11 Missense_Mutation p.D1575E 0.26 deleterious(0) benign(0.218) TCGA-06-5416-01 X 117805075 117805075 C T DOCK11 Silent p.I1722I 0.25 TCGA-06-5416-01 X 117810633 117810633 G T DOCK11 Missense_Mutation p.R1798I 0.38 deleterious(0) possibly_damaging(0.825) TCGA-06-5416-01 X 117883655 117883655 C T IL13RA1 Silent p.C134C 0.27 TCGA-06-5416-01 X 117900927 117900927 G A IL13RA1 Missense_Mutation p.E333K 0.25 tolerated(0.19) benign(0.022) TCGA-06-5416-01 X 118145778 118145778 C A LONRF3 Missense_Mutation p.N551K 0.07 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 118151694 118151694 C T LONRF3 3'UTR 0.33 TCGA-06-5416-01 X 118221158 118221158 C T KIAA1210 Silent p.Q1345Q 0.28 TCGA-06-5416-01 X 118222065 118222065 C T KIAA1210 Missense_Mutation p.G1043D 0.53 tolerated(0.21) benign(0.389) TCGA-06-5416-01 X 118223230 118223230 C A KIAA1210 Missense_Mutation p.D655Y 0.29 deleterious(0) possibly_damaging(0.847) TCGA-06-5416-01 X 118223352 118223352 T A KIAA1210 Missense_Mutation p.K614I 0.21 deleterious(0) probably_damaging(0.924) TCGA-06-5416-01 X 118716574 118716574 C A UBE2A Missense_Mutation p.L89M 0.24 tolerated(0.1) probably_damaging(1) TCGA-06-5416-01 X 118750536 118750536 A G SEPT6 3'Flank 0.46 TCGA-06-5416-01 X 118774681 118774681 C T SEPT6 Missense_Mutation p.R254Q 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 X 118923908 118923908 G A RPL39 Missense_Mutation p.P24S 0.27 deleterious(0.03) benign(0.371) TCGA-06-5416-01 X 118971821 118971821 G A UPF3B Missense_Mutation p.R401W 0.56 tolerated(0.24) probably_damaging(0.982) TCGA-06-5416-01 X 118975045 118975045 C A UPF3B Missense_Mutation p.K267N 0.21 deleterious(0.03) possibly_damaging(0.894) TCGA-06-5416-01 X 118975182 118975182 C A UPF3B Nonsense_Mutation p.E222* 0.27 TCGA-06-5416-01 X 119387392 119387392 G A ZBTB33 Missense_Mutation p.R41Q 0.57 deleterious(0.03) probably_damaging(0.996) TCGA-06-5416-01 X 119388411 119388411 C T ZBTB33 Missense_Mutation p.L381F 0.60 tolerated(0.71) benign(0.193) TCGA-06-5416-01 X 119388912 119388912 C T ZBTB33 Nonsense_Mutation p.R548* 0.27 TCGA-06-5416-01 X 119402231 119402231 G A TMEM255A Silent p.L253L 0.26 TCGA-06-5416-01 X 119427847 119427847 C A TMEM255A Missense_Mutation p.Q87H 0.57 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 X 119582836 119582836 A G LAMP2 Missense_Mutation p.V182A 0.30 deleterious(0.03) benign(0.314) TCGA-06-5416-01 X 119589309 119589309 C T LAMP2 Silent p.A100A 0.26 TCGA-06-5416-01 X 119739318 119739318 A C MCTS1 Missense_Mutation p.K24T 0.27 deleterious(0) possibly_damaging(0.891) TCGA-06-5416-01 X 119739968 119739968 G A MCTS1 Missense_Mutation p.E68K 0.28 tolerated(0.15) benign(0.029) TCGA-06-5416-01 X 119742079 119742079 G A MCTS1 Splice_Site p.X89_splice 0.57 TCGA-06-5416-01 X 119746198 119746198 G A MCTS1 3'Flank 0.28 TCGA-06-5416-01 X 119760963 119760963 G T C1GALT1C1 Missense_Mutation p.A20D 0.25 deleterious(0.02) possibly_damaging(0.828) TCGA-06-5416-01 X 120009128 120009128 G A CT47B1 Missense_Mutation p.R133C 0.30 tolerated(0.1) possibly_damaging(0.83) TCGA-06-5416-01 X 120009185 120009185 G A CT47B1 Missense_Mutation p.R114W 0.23 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 X 120181475 120181475 G A GLUD2 5'UTR 0.36 TCGA-06-5416-01 X 120182524 120182524 C A GLUD2 Missense_Mutation p.A329D 0.28 deleterious(0) benign(0.005) TCGA-06-5416-01 X 122387391 122387391 G A GRIA3 Missense_Mutation p.R169Q 0.27 tolerated(0.11) possibly_damaging(0.87) TCGA-06-5416-01 X 122537264 122537264 C T GRIA3 Missense_Mutation p.A396V 0.22 tolerated(0.61) benign(0) TCGA-06-5416-01 X 122757708 122757708 C T THOC2 Missense_Mutation p.E1145K 0.24 deleterious(0) possibly_damaging(0.665) TCGA-06-5416-01 X 122802143 122802143 A C THOC2 Missense_Mutation p.I295S 0.31 deleterious(0) possibly_damaging(0.459) TCGA-06-5416-01 X 122831592 122831592 G C THOC2 Missense_Mutation p.T95R 0.71 deleterious(0) possibly_damaging(0.776) TCGA-06-5416-01 X 123040865 123040865 G A XIAP Missense_Mutation p.R443H 0.26 deleterious(0.02) possibly_damaging(0.564) TCGA-06-5416-01 X 123040893 123040893 C T XIAP Silent p.I452I 0.27 TCGA-06-5416-01 X 123156493 123156493 G T STAG2 Nonsense_Mutation p.E6* 0.25 TCGA-06-5416-01 X 123205011 123205011 C A STAG2 Missense_Mutation p.L791M 0.29 deleterious(0) possibly_damaging(0.476) TCGA-06-5416-01 X 123554512 123554512 G T TENM1 Missense_Mutation p.A1544D 0.26 deleterious(0.03) benign(0.368) TCGA-06-5416-01 X 123654547 123654547 G A TENM1 Missense_Mutation p.R1041W 0.25 deleterious(0.01) benign(0.006) TCGA-06-5416-01 X 123654553 123654553 G T TENM1 Missense_Mutation p.L1039M 0.31 deleterious(0.02) benign(0.346) TCGA-06-5416-01 X 123787498 123787498 G T TENM1 Missense_Mutation p.S435Y 0.59 deleterious(0) probably_damaging(0.928) TCGA-06-5416-01 X 123787615 123787615 G A TENM1 Missense_Mutation p.A396V 0.32 tolerated_low_confidence(0.46) benign(0.004) TCGA-06-5416-01 X 123870993 123870993 G T TENM1 Missense_Mutation p.P197H 0.33 tolerated_low_confidence(0.6) probably_damaging(0.992) TCGA-06-5416-01 X 123871006 123871006 G T TENM1 Missense_Mutation p.L193I 0.31 tolerated_low_confidence(0.13) probably_damaging(0.938) TCGA-06-5416-01 X 125685303 125685303 G A DCAF12L1 Missense_Mutation p.A430V 0.31 deleterious(0) benign(0.117) TCGA-06-5416-01 X 125685911 125685911 G A DCAF12L1 Silent p.F227F 0.31 TCGA-06-5416-01 X 125686378 125686378 C T DCAF12L1 Missense_Mutation p.D72N 0.27 deleterious(0.04) benign(0.065) TCGA-06-5416-01 X 127185338 127185338 A G ACTRT1 Missense_Mutation p.I283T 0.52 deleterious(0) possibly_damaging(0.803) TCGA-06-5416-01 X 127185958 127185958 A G ACTRT1 Silent p.R76R 0.62 TCGA-06-5416-01 X 12734635 12734635 G A FRMPD4 Missense_Mutation p.R686K 0.25 tolerated_low_confidence(0.13) benign(0.003) TCGA-06-5416-01 X 12841034 12841034 C A PRPS2 3'UTR 0.50 TCGA-06-5416-01 X 128599839 128599839 C A SMARCA1 Missense_Mutation p.K933N 0.22 deleterious(0.03) probably_damaging(0.978) TCGA-06-5416-01 X 128723839 128723839 G A OCRL Silent p.P829P 0.31 TCGA-06-5416-01 X 128896715 128896715 A G XPNPEP2 Missense_Mutation p.D570G 0.56 deleterious(0.01) possibly_damaging(0.908) TCGA-06-5416-01 X 128901642 128901642 G A XPNPEP2 Missense_Mutation p.D602N 0.55 tolerated(0.31) benign(0.052) TCGA-06-5416-01 X 12905748 12905748 C T TLR7 Silent p.S707S 0.21 TCGA-06-5416-01 X 12906122 12906122 C T TLR7 Missense_Mutation p.T832I 0.27 deleterious(0) possibly_damaging(0.866) TCGA-06-5416-01 X 12906330 12906330 C T TLR7 Silent p.D901D 0.25 TCGA-06-5416-01 X 12906659 12906659 C T TLR7 Missense_Mutation p.S1011F 0.60 deleterious(0) probably_damaging(0.992) TCGA-06-5416-01 X 129148824 129148824 G A BCORL1 Silent p.E692E 0.20 TCGA-06-5416-01 X 129149365 129149365 C T BCORL1 Missense_Mutation p.P873S 0.66 benign(0.01) TCGA-06-5416-01 X 129159308 129159308 G A BCORL1 Silent p.E1344E 0.17 TCGA-06-5416-01 X 129189985 129189985 G A BCORL1 Silent p.E1670E 0.28 TCGA-06-5416-01 X 129201111 129201111 C A ELF4 Missense_Mutation p.R526M 0.25 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 X 129281750 129281750 G A AIFM1 Missense_Mutation p.R151W 0.24 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 X 12938573 12938573 C T TLR8 Missense_Mutation p.R472C 0.24 tolerated(0.06) possibly_damaging(0.608) TCGA-06-5416-01 X 129519279 129519279 G A GPR119 Missense_Mutation p.A48V 0.26 deleterious(0) probably_damaging(0.989) TCGA-06-5416-01 X 129546655 129546655 G A RBMX2 Missense_Mutation p.D268N 0.17 deleterious(0) possibly_damaging(0.884) TCGA-06-5416-01 X 129630051 129630051 G T RP1-274L7.1 Intron 0.20 TCGA-06-5416-01 X 12994427 12994427 C T TMSB4X Missense_Mutation p.S16L 0.35 tolerated(0.17) benign(0.026) TCGA-06-5416-01 X 130219681 130219681 G A ARHGAP36 Missense_Mutation p.E359K 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-06-5416-01 X 130407732 130407732 G T IGSF1 3'UTR 0.23 TCGA-06-5416-01 X 130407759 130407759 G T IGSF1 3'UTR 0.25 TCGA-06-5416-01 X 130411896 130411896 T C IGSF1 Missense_Mutation p.T757A 0.57 tolerated(0.88) benign(0.298) TCGA-06-5416-01 X 130412470 130412470 G A IGSF1 Missense_Mutation p.S674L 0.27 deleterious(0) possibly_damaging(0.883) TCGA-06-5416-01 X 130415224 130415224 C T IGSF1 Nonsense_Mutation p.W538* 0.28 TCGA-06-5416-01 X 130417063 130417063 G T IGSF1 Missense_Mutation p.F281L 0.24 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 X 130678587 130678587 T G OR13H1 Missense_Mutation p.I180M 0.28 deleterious(0.04) benign(0.232) TCGA-06-5416-01 X 131202342 131202342 G A MST4 Missense_Mutation p.D144N 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 X 131228097 131228097 C T FRMD7 Missense_Mutation p.A119T 0.24 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 131573629 131573629 A G MBNL3 Missense_Mutation p.V4A 0.59 deleterious(0.05) benign(0.442) TCGA-06-5416-01 X 131762687 131762687 G A HS6ST2 Missense_Mutation p.T501I 0.23 tolerated(0.08) benign(0.115) TCGA-06-5416-01 X 132090963 132090963 C T HS6ST2 Missense_Mutation p.E274K 0.32 tolerated(0.08) possibly_damaging(0.758) TCGA-06-5416-01 X 132091118 132091118 T C HS6ST2 Missense_Mutation p.D222G 0.29 deleterious_low_confidence(0) possibly_damaging(0.867) TCGA-06-5416-01 X 132091282 132091282 G A HS6ST2 Silent p.I167I 0.34 TCGA-06-5416-01 X 132092456 132092456 A G HS6ST2 Missense_Mutation p.S59P 0.38 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-06-5416-01 X 132159377 132159377 C A USP26 3'UTR 0.75 TCGA-06-5416-01 X 132160818 132160818 T G USP26 Silent p.S477S 0.29 TCGA-06-5416-01 X 132161059 132161059 T C USP26 Missense_Mutation p.N397S 0.28 tolerated(0.11) benign(0.223) TCGA-06-5416-01 X 132161814 132161814 C T USP26 Silent p.E145E 0.33 TCGA-06-5416-01 X 132161899 132161899 C T USP26 Missense_Mutation p.S117N 0.30 tolerated(0.45) benign(0.001) TCGA-06-5416-01 X 132162201 132162201 C A USP26 Missense_Mutation p.K16N 0.53 tolerated(0.38) benign(0.021) TCGA-06-5416-01 X 132438793 132438793 C T GPC4 Missense_Mutation p.G418S 0.22 tolerated(0.46) benign(0.027) TCGA-06-5416-01 X 13337265 13337265 C T ATXN3L Silent p.S263S 0.26 TCGA-06-5416-01 X 133551330 133551330 C G PHF6 Nonsense_Mutation p.Y322* 0.26 TCGA-06-5416-01 X 133700720 133700720 G A PLAC1 5'UTR 0.25 TCGA-06-5416-01 X 133930196 133930196 T C FAM122B Missense_Mutation p.T14A 0.25 tolerated(0.11) benign(0.168) TCGA-06-5416-01 X 133988191 133988191 G A FAM122C Silent p.S171S 0.31 TCGA-06-5416-01 X 133988285 133988285 G T FAM122C 3'UTR 0.32 TCGA-06-5416-01 X 134186061 134186061 C T FAM127B Silent p.P26P 0.30 TCGA-06-5416-01 X 134292213 134292213 A C CT55 Missense_Mutation p.L150V 0.27 deleterious(0.01) benign(0.058) TCGA-06-5416-01 X 134421074 134421074 T G ZNF75D Missense_Mutation p.N510H 0.23 deleterious_low_confidence(0.03) possibly_damaging(0.703) TCGA-06-5416-01 X 134421563 134421563 C A ZNF75D Nonsense_Mutation p.E347* 0.24 TCGA-06-5416-01 X 134427662 134427662 C A ZNF75D Missense_Mutation p.K135N 0.23 tolerated(0.07) benign(0.01) TCGA-06-5416-01 X 134428034 134428034 G A ZNF75D Silent p.C11C 0.33 TCGA-06-5416-01 X 134483234 134483234 A G ZNF449 Missense_Mutation p.D185G 0.31 tolerated(0.37) benign(0.001) TCGA-06-5416-01 X 134706945 134706945 G T DDX26B Missense_Mutation p.G498V 0.29 tolerated(0.06) probably_damaging(0.996) TCGA-06-5416-01 X 134714077 134714077 G A DDX26B Silent p.K791K 0.13 TCGA-06-5416-01 X 134988617 134988617 C T SAGE1 Nonsense_Mutation p.Q215* 0.34 TCGA-06-5416-01 X 135067833 135067833 G A SLC9A6 Missense_Mutation p.V58M 0.25 tolerated(0.15) possibly_damaging(0.672) TCGA-06-5416-01 X 135098842 135098842 C A SLC9A6 Silent p.I425I 0.56 TCGA-06-5416-01 X 135127043 135127043 T A SLC9A6 3'UTR 0.36 TCGA-06-5416-01 X 135289267 135289267 G A FHL1 Silent p.K83K 0.23 TCGA-06-5416-01 X 135301783 135301783 G A MAP7D3 Missense_Mutation p.A845V 0.19 tolerated(0.17) benign(0.135) TCGA-06-5416-01 X 135429793 135429793 C T GPR112 Missense_Mutation p.H1310Y 0.13 tolerated(0.06) benign(0.003) TCGA-06-5416-01 X 135430259 135430259 C T GPR112 Missense_Mutation p.S1465F 0.24 tolerated(0.09) benign(0.021) TCGA-06-5416-01 X 135438285 135438285 G A GPR112 Silent p.R2296R 0.25 TCGA-06-5416-01 X 135441565 135441565 T C GPR112 Silent p.D2365D 0.27 TCGA-06-5416-01 X 135574383 135574383 C T BRS3 Missense_Mutation p.A350V 0.05 tolerated(0.35) benign(0.001) TCGA-06-5416-01 X 135579789 135579789 C T HTATSF1 5'UTR 0.26 TCGA-06-5416-01 X 135594293 135594293 T C HTATSF1 3'UTR 0.28 TCGA-06-5416-01 X 135618314 135618314 C T VGLL1 Silent p.F45F 0.24 TCGA-06-5416-01 X 135631084 135631084 C A VGLL1 Missense_Mutation p.S184Y 0.26 tolerated(0.07) possibly_damaging(0.716) TCGA-06-5416-01 X 135750104 135750104 G T ARHGEF6 3'UTR 0.56 TCGA-06-5416-01 X 135863097 135863097 A G ARHGEF6 5'UTR 0.31 TCGA-06-5416-01 X 135957249 135957249 A C RBMX Missense_Mutation p.S287R 0.28 tolerated(0.05) benign(0.062) TCGA-06-5416-01 X 135961536 135961536 C T RBMX Silent p.T17T 0.05 TCGA-06-5416-01 X 13621439 13621439 C A EGFL6 Missense_Mutation p.S135Y 0.30 deleterious(0) probably_damaging(0.926) TCGA-06-5416-01 X 13624542 13624542 C T EGFL6 Nonsense_Mutation p.R189* 0.60 TCGA-06-5416-01 X 13680627 13680627 G A TCEANC Silent p.K30K 0.23 TCGA-06-5416-01 X 13769371 13769371 C T OFD1 Silent p.N313N 0.22 TCGA-06-5416-01 X 13778471 13778471 C A OFD1 Missense_Mutation p.T631N 0.65 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 X 13778817 13778817 C T OFD1 Silent p.L746L 0.64 TCGA-06-5416-01 X 13786333 13786333 C T OFD1 Missense_Mutation p.S973L 0.29 tolerated(0.41) possibly_damaging(0.519) TCGA-06-5416-01 X 138678851 138678851 T G MCF2 Missense_Mutation p.K788Q 0.33 deleterious(0) possibly_damaging(0.732) TCGA-06-5416-01 X 138687104 138687104 G T MCF2 Missense_Mutation p.L609I 0.24 deleterious(0.05) probably_damaging(0.979) TCGA-06-5416-01 X 139040374 139040374 C A CXorf66 Missense_Mutation p.D31Y 0.25 deleterious(0.01) benign(0.094) TCGA-06-5416-01 X 139586809 139586809 C A SOX3 Silent p.V139V 0.41 TCGA-06-5416-01 X 14026983 14026983 C T GEMIN8 3'UTR 0.25 TCGA-06-5416-01 X 140335730 140335730 C T SPANXC Missense_Mutation p.A72T 0.11 deleterious(0.01) benign(0.196) TCGA-06-5416-01 X 140984417 140984417 C A MAGEC3 Intron 0.23 TCGA-06-5416-01 X 140993230 140993230 C A MAGEC1 Missense_Mutation p.L14I 0.28 tolerated_low_confidence(0.11) benign(0.364) TCGA-06-5416-01 X 140993426 140993426 C T MAGEC1 Missense_Mutation p.P79L 0.55 deleterious_low_confidence(0) possibly_damaging(0.713) TCGA-06-5416-01 X 140993694 140993694 C T MAGEC1 Silent p.S168S 0.24 TCGA-06-5416-01 X 140994486 140994486 A C MAGEC1 Missense_Mutation p.Q432H 0.21 deleterious_low_confidence(0) benign(0.216) TCGA-06-5416-01 X 140996251 140996251 G A MAGEC1 Missense_Mutation p.D1021N 0.25 deleterious(0.03) unknown(0) TCGA-06-5416-01 X 141290915 141290915 G A MAGEC2 Missense_Mutation p.R287W 0.25 deleterious(0.04) benign(0.042) TCGA-06-5416-01 X 142717610 142717610 T C SLITRK4 Missense_Mutation p.R439G 0.34 deleterious(0.02) benign(0.315) TCGA-06-5416-01 X 142795141 142795141 C A SPANXN2 Missense_Mutation p.E179D 0.06 tolerated_low_confidence(0.12) unknown(0) TCGA-06-5416-01 X 142803702 142803702 T G SPANXN2 Missense_Mutation p.N21H 0.27 deleterious_low_confidence(0.03) probably_damaging(0.977) TCGA-06-5416-01 X 1428414 1428414 G A CSF2RA 3'UTR 0.22 TCGA-06-5416-01 X 1428415 1428415 C T CSF2RA 3'UTR 0.20 TCGA-06-5416-01 X 1428482 1428482 A C CSF2RA 3'UTR 0.24 TCGA-06-5416-01 X 142967745 142967745 G T UBE2NL 3'UTR 0.25 TCGA-06-5416-01 X 144904033 144904033 G T SLITRK2 Missense_Mutation p.K30N 0.29 tolerated(0.49) benign(0.062) TCGA-06-5416-01 X 144905153 144905153 C T SLITRK2 Silent p.L404L 0.25 TCGA-06-5416-01 X 144905239 144905239 C T SLITRK2 Silent p.G432G 0.22 TCGA-06-5416-01 X 144909490 144909490 G A TMEM257 Missense_Mutation p.A99T 0.25 tolerated_low_confidence(0.12) possibly_damaging(0.682) TCGA-06-5416-01 X 14599352 14599352 G A GLRA2 Silent p.R106R 0.63 TCGA-06-5416-01 X 146280567 146280567 T C MIR513B RNA 0.24 TCGA-06-5416-01 X 147024735 147024735 C T FMR1 Missense_Mutation p.R454C 0.22 deleterious(0) probably_damaging(0.987) TCGA-06-5416-01 X 147062855 147062855 T G FMR1NB 5'UTR 0.36 TCGA-06-5416-01 X 147063195 147063195 C A FMR1NB Nonsense_Mutation p.C91* 0.26 TCGA-06-5416-01 X 147733566 147733566 C T AFF2 Missense_Mutation p.R32W 0.24 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 X 147891423 147891423 C T AFF2 Silent p.S355S 0.24 TCGA-06-5416-01 X 148044321 148044321 G T AFF2 Missense_Mutation p.D923Y 0.22 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 148048601 148048601 T A AFF2 Missense_Mutation p.F1065L 0.57 tolerated(0.09) benign(0.225) TCGA-06-5416-01 X 148770540 148770540 T G MAGEA11 5'UTR 0.34 TCGA-06-5416-01 X 148797849 148797849 C T MAGEA11 Missense_Mutation p.R235C 0.30 tolerated(0.18) benign(0.003) TCGA-06-5416-01 X 14882970 14882970 T G FANCB Missense_Mutation p.E221D 0.28 deleterious(0.03) possibly_damaging(0.828) TCGA-06-5416-01 X 149013407 149013407 C T MAGEA8 Missense_Mutation p.R121C 0.26 deleterious(0.01) possibly_damaging(0.67) TCGA-06-5416-01 X 14936843 14936843 T G MOSPD2 Missense_Mutation p.L453R 0.28 tolerated(0.37) benign(0.355) TCGA-06-5416-01 X 149613849 149613849 C T MAMLD1 Missense_Mutation p.R23C 0.52 deleterious(0) probably_damaging(0.984) TCGA-06-5416-01 X 149809854 149809854 G A MTM1 Missense_Mutation p.R214Q 0.61 tolerated(0.2) possibly_damaging(0.501) TCGA-06-5416-01 X 149826450 149826450 G A MTM1 Missense_Mutation p.E404K 0.30 deleterious(0.04) benign(0.117) TCGA-06-5416-01 X 149840035 149840035 G A MTM1 Silent p.S593S 0.31 TCGA-06-5416-01 X 149905736 149905736 G T MTMR1 Missense_Mutation p.R422I 0.56 deleterious(0) benign(0.082) TCGA-06-5416-01 X 150154541 150154541 G T HMGB3 Missense_Mutation p.E56D 0.23 deleterious(0.04) benign(0.437) TCGA-06-5416-01 X 150349197 150349197 G A GPR50 Missense_Mutation p.R381H 0.63 tolerated_low_confidence(0.37) benign(0) TCGA-06-5416-01 X 150789459 150789459 G A PASD1 Missense_Mutation p.V89I 0.28 tolerated(0.18) benign(0.391) TCGA-06-5416-01 X 150885817 150885817 C T FATE1 Silent p.G60G 0.32 TCGA-06-5416-01 X 150906939 150906939 C A CNGA2 5'UTR 0.20 TCGA-06-5416-01 X 150911655 150911655 C T CNGA2 Missense_Mutation p.S227F 0.61 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 151092622 151092622 C A MAGEA4 Silent p.I162I 0.30 TCGA-06-5416-01 X 151284173 151284173 C T RP11-1007I13.4 RNA 0.67 TCGA-06-5416-01 X 151303321 151303321 C A MAGEA10 Missense_Mutation p.G258W 0.30 deleterious(0) probably_damaging(0.977) TCGA-06-5416-01 X 151304085 151304085 C T MAGEA10 Missense_Mutation p.R3Q 0.21 tolerated(0.31) benign(0.112) TCGA-06-5416-01 X 151869818 151869818 G T MAGEA6 Missense_Mutation p.D170Y 0.25 deleterious(0) possibly_damaging(0.898) TCGA-06-5416-01 X 152034467 152034467 C T NSDHL Silent p.I216I 0.28 TCGA-06-5416-01 X 152225330 152225330 C T PNMA3 5'UTR 0.62 TCGA-06-5416-01 X 152226095 152226095 C A PNMA3 Missense_Mutation p.T228N 0.24 deleterious(0) possibly_damaging(0.577) TCGA-06-5416-01 X 152610128 152610128 G A ZNF275 Intron 0.20 TCGA-06-5416-01 X 15262588 15262588 A C ASB9 3'UTR 0.24 TCGA-06-5416-01 X 152686371 152686371 C A ZFP92 Missense_Mutation p.P179H 0.33 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 15270416 15270416 C T ASB9 Silent p.E131E 0.23 TCGA-06-5416-01 X 152710865 152710865 C A TREX2 Missense_Mutation p.E8D 0.33 deleterious(0.01) benign(0.033) TCGA-06-5416-01 X 152720451 152720451 C T HAUS7 Intron 0.28 TCGA-06-5416-01 X 152806869 152806869 G T ATP2B3 Missense_Mutation p.Q87H 0.52 tolerated(0.07) possibly_damaging(0.726) TCGA-06-5416-01 X 152814982 152814982 C T ATP2B3 Missense_Mutation p.R456C 0.59 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 X 152835075 152835075 T C ATP2B3 Intron 0.64 TCGA-06-5416-01 X 152915045 152915045 C T DUSP9 Silent p.F244F 0.54 TCGA-06-5416-01 X 152936555 152936555 G A PNCK Silent p.F318F 0.25 TCGA-06-5416-01 X 152938109 152938109 C T PNCK Missense_Mutation p.A121T 0.51 deleterious(0.03) benign(0.007) TCGA-06-5416-01 X 152955858 152955858 C T SLC6A8 Silent p.I97I 0.21 TCGA-06-5416-01 X 152991091 152991091 C T ABCD1 Missense_Mutation p.R124C 0.27 deleterious(0) probably_damaging(0.93) TCGA-06-5416-01 X 152991209 152991209 G A ABCD1 Missense_Mutation p.R163H 0.33 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 153031000 153031000 G A PLXNB3 5'UTR 0.35 TCGA-06-5416-01 X 153049822 153049822 C T SRPK3 Silent p.I407I 0.20 TCGA-06-5416-01 X 153050895 153050895 C A SRPK3 Missense_Mutation p.L542M 0.27 deleterious(0) possibly_damaging(0.893) TCGA-06-5416-01 X 153051677 153051677 T C IDH3G Missense_Mutation p.D357G 0.63 tolerated(0.42) benign(0.001) TCGA-06-5416-01 X 153052325 153052325 C T IDH3G Silent p.A285A 0.25 TCGA-06-5416-01 X 153059849 153059849 G A SSR4 5'UTR 0.50 TCGA-06-5416-01 X 153063217 153063217 G A SSR4 Missense_Mutation p.G100D 0.18 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 153063239 153063239 C T SSR4 Silent p.F107F 0.25 TCGA-06-5416-01 X 153068999 153068999 G A PDZD4 Missense_Mutation p.R707W 0.60 deleterious(0) probably_damaging(0.979) TCGA-06-5416-01 X 153130625 153130625 C T L1CAM Silent p.S930S 0.77 TCGA-06-5416-01 X 153130648 153130648 C T L1CAM Missense_Mutation p.A923T 0.15 tolerated(0.42) benign(0.217) TCGA-06-5416-01 X 153136307 153136307 G A L1CAM Missense_Mutation p.A211V 0.27 tolerated(0.38) probably_damaging(1) TCGA-06-5416-01 X 153197874 153197874 C T NAA10 Missense_Mutation p.R79H 0.23 deleterious(0.01) possibly_damaging(0.645) TCGA-06-5416-01 X 153199892 153199892 G T NAA10 Missense_Mutation p.L20I 0.33 tolerated(0.06) possibly_damaging(0.459) TCGA-06-5416-01 X 153207410 153207410 C T RENBP Silent p.Q254Q 0.25 TCGA-06-5416-01 X 153297892 153297892 G T MECP2 Missense_Mutation p.P60Q 0.18 deleterious(0) possibly_damaging(0.743) TCGA-06-5416-01 X 153421886 153421886 G A OPN1LW Missense_Mutation p.A288T 0.27 deleterious(0.01) possibly_damaging(0.869) TCGA-06-5416-01 X 15349887 15349887 G A PIGA Missense_Mutation p.L56F 0.24 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 153539281 153539281 C A TKTL1 Missense_Mutation p.L149I 0.28 deleterious(0.02) possibly_damaging(0.651) TCGA-06-5416-01 X 153577909 153577909 C A FLNA Missense_Mutation p.S2526I 0.28 tolerated(0.07) benign(0.413) TCGA-06-5416-01 X 153588359 153588359 C A FLNA Missense_Mutation p.Q1268H 0.33 tolerated(0.53) benign(0.001) TCGA-06-5416-01 X 153594455 153594455 C T FLNA Missense_Mutation p.V456M 0.30 deleterious(0) probably_damaging(0.974) TCGA-06-5416-01 X 153628648 153628648 C T RPL10 Intron 0.64 TCGA-06-5416-01 X 153631526 153631526 C A DNASE1L1 Silent p.V177V 0.26 TCGA-06-5416-01 X 153689634 153689634 C T PLXNA3 Missense_Mutation p.R264C 0.28 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 153696505 153696505 A G PLXNA3 Missense_Mutation p.T1301A 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-06-5416-01 X 153706365 153706365 C T LAGE3 Missense_Mutation p.R117Q 0.65 tolerated(0.08) possibly_damaging(0.742) TCGA-06-5416-01 X 153760910 153760910 G A G6PD Missense_Mutation p.R417C 0.24 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 X 153999093 153999093 C T DKC1 Silent p.D325D 0.25 TCGA-06-5416-01 X 154005135 154005135 C T DKC1 Missense_Mutation p.S513F 0.29 deleterious_low_confidence(0) possibly_damaging(0.485) TCGA-06-5416-01 X 154009557 154009557 G A MPP1 Missense_Mutation p.S394L 0.67 tolerated(0.2) probably_damaging(0.922) TCGA-06-5416-01 X 15403132 15403132 C T PIR Silent p.G289G 0.23 TCGA-06-5416-01 X 154157148 154157148 G A F8 Silent p.P1639P 0.24 TCGA-06-5416-01 X 154157403 154157403 C A F8 Missense_Mutation p.W1554C 0.26 tolerated(0.07) benign(0.428) TCGA-06-5416-01 X 154197622 154197622 G T F8 Silent p.I331I 0.31 TCGA-06-5416-01 X 154197654 154197654 C T F8 Missense_Mutation p.D321N 0.21 tolerated(0.05) probably_damaging(0.986) TCGA-06-5416-01 X 154221385 154221385 C T F8 Missense_Mutation p.E143K 0.27 deleterious(0.01) benign(0.25) TCGA-06-5416-01 X 154250777 154250777 G A F8 Silent p.C17C 0.05 TCGA-06-5416-01 X 154464621 154464621 C T VBP1 Nonsense_Mutation p.R166* 0.57 TCGA-06-5416-01 X 154493652 154493652 G A RAB39B 5'UTR 0.35 TCGA-06-5416-01 X 154774769 154774769 C A TMLHE Nonsense_Mutation p.E57* 0.21 TCGA-06-5416-01 X 155003434 155003434 C T SPRY3 5'UTR 0.31 TCGA-06-5416-01 X 155003588 155003588 C T SPRY3 Missense_Mutation p.R19C 0.07 deleterious(0.04) benign(0.002) TCGA-06-5416-01 X 15526495 15526495 C A BMX Missense_Mutation p.L7I 0.21 deleterious(0.01) probably_damaging(0.999) TCGA-06-5416-01 X 15574251 15574251 G A BMX Missense_Mutation p.R670Q 0.27 tolerated(0.61) benign(0.004) TCGA-06-5416-01 X 15596230 15596230 C T ACE2 Missense_Mutation p.D427N 0.25 tolerated(0.28) benign(0.004) TCGA-06-5416-01 X 15609873 15609873 C A ACE2 Missense_Mutation p.E182D 0.57 tolerated(0.27) benign(0.002) TCGA-06-5416-01 X 15609887 15609887 G A ACE2 Missense_Mutation p.P178S 0.30 tolerated(0.13) benign(0.306) TCGA-06-5416-01 X 15790640 15790640 A G CA5B Missense_Mutation p.E121G 0.60 tolerated(0.11) benign(0.014) TCGA-06-5416-01 X 15827389 15827389 C T ZRSR2 Nonsense_Mutation p.R169* 0.24 TCGA-06-5416-01 X 16775341 16775341 C T SYAP1 Silent p.F280F 0.07 TCGA-06-5416-01 X 16836780 16836780 T C TXLNG Silent p.D62D 0.26 TCGA-06-5416-01 X 16857990 16857990 G A TXLNG Missense_Mutation p.R400H 0.21 deleterious(0) possibly_damaging(0.763) TCGA-06-5416-01 X 16859874 16859874 C T TXLNG Silent p.I524I 0.29 TCGA-06-5416-01 X 16863997 16863997 A G RBBP7 Missense_Mutation p.V432A 0.29 deleterious(0.05) benign(0.314) TCGA-06-5416-01 X 17047701 17047701 G A REPS2 Silent p.G242G 0.33 TCGA-06-5416-01 X 1714291 1714291 G A AKAP17A Silent p.S259S 0.30 TCGA-06-5416-01 X 17152000 17152000 C A REPS2 Silent p.S544S 0.21 TCGA-06-5416-01 X 1746629 1746629 C T ASMT Silent p.G136G 0.28 TCGA-06-5416-01 X 17744704 17744704 G A NHS Nonsense_Mutation p.W805* 0.20 TCGA-06-5416-01 X 17745574 17745574 G A NHS Silent p.Q1095Q 0.24 TCGA-06-5416-01 X 17746269 17746269 G A NHS Missense_Mutation p.R1327H 0.65 tolerated_low_confidence(1) benign(0.008) TCGA-06-5416-01 X 18352177 18352177 C T SCML2 Silent p.V5V 0.19 TCGA-06-5416-01 X 18646679 18646679 G A CDKL5 Silent p.P895P 0.29 TCGA-06-5416-01 X 18662639 18662639 C T RS1 Missense_Mutation p.D145N 0.62 tolerated(0.12) possibly_damaging(0.471) TCGA-06-5416-01 X 18662650 18662650 C T RS1 Missense_Mutation p.R141H 0.26 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 X 18912405 18912405 C T PHKA2 Missense_Mutation p.D1152N 0.27 deleterious(0.01) benign(0.018) TCGA-06-5416-01 X 18915389 18915389 G A PHKA2 Silent p.I1058I 0.24 TCGA-06-5416-01 X 18923936 18923936 C T PHKA2 Missense_Mutation p.D950N 0.30 deleterious(0.03) benign(0.049) TCGA-06-5416-01 X 18963229 18963229 C T PHKA2 Silent p.P195P 0.27 TCGA-06-5416-01 X 19014240 19014240 G A GPR64 Missense_Mutation p.A882V 0.29 tolerated(0.78) possibly_damaging(0.589) TCGA-06-5416-01 X 19021137 19021137 G T GPR64 Missense_Mutation p.A686D 0.06 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 19371279 19371279 C T PDHA1 Silent p.I204I 0.29 TCGA-06-5416-01 X 19377131 19377131 G T PDHA1 Nonsense_Mutation p.E371* 0.24 TCGA-06-5416-01 X 19379464 19379464 G A MAP3K15 Nonsense_Mutation p.R1284* 0.26 TCGA-06-5416-01 X 19398243 19398243 A G MAP3K15 Missense_Mutation p.F862L 0.29 deleterious(0.05) benign(0.02) TCGA-06-5416-01 X 19564126 19564126 C T SH3KBP1 Missense_Mutation p.E513K 0.31 tolerated(0.14) benign(0.018) TCGA-06-5416-01 X 19568149 19568149 C T SH3KBP1 Silent p.P479P 0.24 TCGA-06-5416-01 X 19587235 19587235 C T SH3KBP1 Missense_Mutation p.R457H 0.29 tolerated(0.05) benign(0.028) TCGA-06-5416-01 X 19649993 19649993 G A SH3KBP1 Missense_Mutation p.L296F 0.53 deleterious(0) benign(0.21) TCGA-06-5416-01 X 19702076 19702076 G A SH3KBP1 Silent p.N197N 0.28 TCGA-06-5416-01 X 19971939 19971939 C T CXorf23 Missense_Mutation p.D508N 0.23 tolerated(0.73) benign(0.024) TCGA-06-5416-01 X 19983440 19983440 C A CXorf23 Missense_Mutation p.E332D 0.26 tolerated(0.11) benign(0.02) TCGA-06-5416-01 X 19984613 19984613 G A CXorf23 Missense_Mutation p.R66C 0.58 deleterious(0) benign(0.22) TCGA-06-5416-01 X 20034431 20034431 C A MAP7D2 Missense_Mutation p.E475D 0.26 tolerated(0.05) unknown(0) TCGA-06-5416-01 X 20062523 20062523 C A MAP7D2 Missense_Mutation p.D280Y 0.31 deleterious(0) probably_damaging(0.993) TCGA-06-5416-01 X 20074872 20074872 C T MAP7D2 Missense_Mutation p.R137H 0.56 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 20190889 20190889 G A RPS6KA3 Missense_Mutation p.A443V 0.23 tolerated(0.21) benign(0.001) TCGA-06-5416-01 X 20194610 20194610 C T RPS6KA3 Missense_Mutation p.G314E 0.19 deleterious(0) probably_damaging(0.97) TCGA-06-5416-01 X 205419 205419 G A PLCXD1 Silent p.T49T 0.05 TCGA-06-5416-01 X 21545014 21545014 C T CNKSR2 Silent p.S329S 0.56 TCGA-06-5416-01 X 21675805 21675805 C T KLHL34 Silent p.E34E 0.24 TCGA-06-5416-01 X 21874982 21874982 C T YY2 Missense_Mutation p.A127V 0.31 tolerated(0.2) benign(0.055) TCGA-06-5416-01 X 21875548 21875548 G A YY2 Missense_Mutation p.E316K 0.59 deleterious(0.03) possibly_damaging(0.827) TCGA-06-5416-01 X 22051182 22051182 G A PHEX Missense_Mutation p.R20Q 0.29 tolerated(0.33) benign(0.002) TCGA-06-5416-01 X 22129611 22129611 G T PHEX Missense_Mutation p.R369I 0.62 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 22291554 22291554 C T ZNF645 Missense_Mutation p.S149L 0.33 tolerated(0.2) benign(0.075) TCGA-06-5416-01 X 230835 230835 G A GTPBP6 Missense_Mutation p.R18C 0.10 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 X 23801775 23801775 G A SAT1 Missense_Mutation p.E23K 0.30 deleterious(0.01) possibly_damaging(0.776) TCGA-06-5416-01 X 23953461 23953461 G T CXorf58 Missense_Mutation p.R235L 0.21 deleterious(0.02) possibly_damaging(0.491) TCGA-06-5416-01 X 23957474 23957474 G A CXorf58 3'UTR 0.38 TCGA-06-5416-01 X 24089786 24089786 A T EIF2S3 Missense_Mutation p.Y375F 0.11 tolerated(0.52) benign(0.019) TCGA-06-5416-01 X 24091330 24091330 A C EIF2S3 Silent p.T435T 0.09 TCGA-06-5416-01 X 24228339 24228339 T C ZFX Silent p.L422L 0.31 TCGA-06-5416-01 X 24229464 24229464 C T ZFX Nonsense_Mutation p.R797* 0.30 TCGA-06-5416-01 X 24545760 24545760 G A PDK3 Missense_Mutation p.V274I 0.57 tolerated(0.44) benign(0.114) TCGA-06-5416-01 X 24546190 24546190 C T PDK3 Intron 0.24 TCGA-06-5416-01 X 24593368 24593368 C A PCYT1B Missense_Mutation p.R259I 0.25 deleterious(0.01) benign(0.163) TCGA-06-5416-01 X 24828873 24828873 A C POLA1 Missense_Mutation p.T1010P 0.20 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 24830852 24830852 G A POLA1 Silent p.L1050L 0.59 TCGA-06-5416-01 X 24906160 24906160 G A POLA1 Missense_Mutation p.R1356Q 0.27 tolerated(0.08) possibly_damaging(0.832) TCGA-06-5416-01 X 25014075 25014075 C T POLA1 3'UTR 0.24 TCGA-06-5416-01 X 26157047 26157047 C T MAGEB18 5'UTR 0.57 TCGA-06-5416-01 X 26158054 26158054 G T MAGEB18 Missense_Mutation p.A318S 0.50 tolerated(0.44) benign(0.014) TCGA-06-5416-01 X 2644396 2644396 C T CD99 Silent p.L153L 0.25 TCGA-06-5416-01 X 2707709 2707709 G A XG Missense_Mutation p.R72H 0.28 tolerated(0.24) benign(0) TCGA-06-5416-01 X 27839469 27839469 C T MAGEB10 Missense_Mutation p.R16C 0.19 deleterious(0.03) probably_damaging(0.998) TCGA-06-5416-01 X 27999307 27999307 C T DCAF8L1 Missense_Mutation p.G49R 0.19 tolerated(0.26) benign(0.012) TCGA-06-5416-01 X 2833667 2833667 C T ARSD Silent p.T310T 0.28 TCGA-06-5416-01 X 29301317 29301317 C A IL1RAPL1 Silent p.L115L 0.32 TCGA-06-5416-01 X 29414380 29414380 C A IL1RAPL1 Missense_Mutation p.S123Y 0.18 deleterious(0) probably_damaging(0.991) TCGA-06-5416-01 X 29959807 29959807 C T IL1RAPL1 Missense_Mutation p.A366V 0.58 tolerated(0.27) probably_damaging(0.985) TCGA-06-5416-01 X 29973344 29973344 C A IL1RAPL1 Missense_Mutation p.L500I 0.30 tolerated(0.33) probably_damaging(0.997) TCGA-06-5416-01 X 29973889 29973889 C T IL1RAPL1 Silent p.I681I 0.32 TCGA-06-5416-01 X 2998953 2998953 G T ARSF Missense_Mutation p.R102I 0.25 tolerated(0.37) benign(0.001) TCGA-06-5416-01 X 30254597 30254597 C A MAGEB3 Missense_Mutation p.L186I 0.36 tolerated(0.06) probably_damaging(0.986) TCGA-06-5416-01 X 30269007 30269007 G T MAGEB1 Missense_Mutation p.D133Y 0.22 deleterious(0.01) probably_damaging(0.912) TCGA-06-5416-01 X 30269332 30269332 C T MAGEB1 Missense_Mutation p.P241L 0.27 deleterious(0) possibly_damaging(0.6) TCGA-06-5416-01 X 30739051 30739051 C T GK Silent p.L474L 0.57 TCGA-06-5416-01 X 30745585 30745585 G T GK Missense_Mutation p.D523Y 0.16 deleterious(0) benign(0.36) TCGA-06-5416-01 X 30872409 30872409 G A TAB3 Missense_Mutation p.T458I 0.29 deleterious(0) probably_damaging(0.957) TCGA-06-5416-01 X 31090110 31090110 C T FTHL17 5'UTR 0.17 TCGA-06-5416-01 X 32235108 32235108 T C DMD Silent p.T2121T 0.33 TCGA-06-5416-01 X 3238788 3238788 C T MXRA5 Silent p.P1646P 0.27 TCGA-06-5416-01 X 3239929 3239929 C A MXRA5 Missense_Mutation p.R1266I 0.24 tolerated(0.19) benign(0.024) TCGA-06-5416-01 X 3239989 3239989 G T MXRA5 Missense_Mutation p.S1246Y 0.27 tolerated(0.1) possibly_damaging(0.656) TCGA-06-5416-01 X 32456372 32456372 C T DMD Missense_Mutation p.E1353K 0.54 possibly_damaging(0.828) TCGA-06-5416-01 X 32536072 32536072 G T DMD Intron 0.54 TCGA-06-5416-01 X 32583932 32583932 G A DMD Missense_Mutation p.L627F 0.28 probably_damaging(0.943) TCGA-06-5416-01 X 32591950 32591950 C T DMD Missense_Mutation p.R539Q 0.53 possibly_damaging(0.785) TCGA-06-5416-01 X 34148898 34148898 G A FAM47A Missense_Mutation p.R500W 0.24 tolerated(0.05) probably_damaging(0.953) TCGA-06-5416-01 X 34648405 34648405 T C TMEM47 3'UTR 0.34 TCGA-06-5416-01 X 34961041 34961041 G A FAM47B Silent p.A31A 0.35 TCGA-06-5416-01 X 34961468 34961468 G A FAM47B Missense_Mutation p.E174K 0.30 tolerated(1) benign(0.017) TCGA-06-5416-01 X 34961580 34961580 G A FAM47B Missense_Mutation p.R211H 0.28 tolerated(0.43) benign(0.001) TCGA-06-5416-01 X 34961813 34961813 G A FAM47B Missense_Mutation p.E289K 0.30 tolerated(1) benign(0.004) TCGA-06-5416-01 X 34962488 34962488 C T FAM47B Silent p.L514L 0.23 TCGA-06-5416-01 X 34962509 34962509 G A FAM47B Missense_Mutation p.E521K 0.31 tolerated(1) benign(0.002) TCGA-06-5416-01 X 35820528 35820528 C A MAGEB16 Missense_Mutation p.S72Y 0.33 tolerated(0.26) probably_damaging(0.961) TCGA-06-5416-01 X 36122758 36122758 A C CHDC2 Missense_Mutation p.N332T 0.54 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 36162790 36162790 G T CHDC2 Missense_Mutation p.R458I 0.19 deleterious_low_confidence(0) benign(0.032) TCGA-06-5416-01 X 36163094 36163094 C A CHDC2 3'UTR 0.24 TCGA-06-5416-01 X 37026592 37026592 C T FAM47C Missense_Mutation p.R37C 0.56 tolerated(0.1) probably_damaging(0.993) TCGA-06-5416-01 X 37027351 37027351 C T FAM47C Missense_Mutation p.R290C 0.32 tolerated(0.19) benign(0) TCGA-06-5416-01 X 37587706 37587706 C T XK Silent p.C442C 0.25 TCGA-06-5416-01 X 37641368 37641368 C A CYBB Missense_Mutation p.L25I 0.60 tolerated(0.12) possibly_damaging(0.468) TCGA-06-5416-01 X 37961679 37961679 C A SYTL5 Missense_Mutation p.L383I 0.25 tolerated(0.13) benign(0.184) TCGA-06-5416-01 X 37969654 37969654 C A SYTL5 Missense_Mutation p.S527R 0.27 deleterious(0.05) benign(0.174) TCGA-06-5416-01 X 37986040 37986040 C T SYTL5 3'UTR 0.33 TCGA-06-5416-01 X 38033492 38033492 C A SRPX Missense_Mutation p.Q90H 0.27 deleterious(0.04) possibly_damaging(0.639) TCGA-06-5416-01 X 39922175 39922175 G A BCOR Silent p.L1333L 0.61 TCGA-06-5416-01 X 39933795 39933795 C T BCOR Silent p.S268S 0.30 TCGA-06-5416-01 X 40496342 40496342 C A CXorf38 Missense_Mutation p.D180Y 0.32 deleterious(0.01) possibly_damaging(0.795) TCGA-06-5416-01 X 40540143 40540143 G A MED14 Missense_Mutation p.S826L 0.26 tolerated(0.23) benign(0.004) TCGA-06-5416-01 X 40551483 40551483 G A MED14 Silent p.F644F 0.62 TCGA-06-5416-01 X 40572274 40572274 G A MED14 Missense_Mutation p.R225C 0.26 deleterious(0.02) possibly_damaging(0.72) TCGA-06-5416-01 X 40982877 40982877 C T USP9X 5'UTR 0.13 TCGA-06-5416-01 X 41026803 41026803 C A USP9X Missense_Mutation p.N799K 0.33 deleterious(0.02) benign(0.079) TCGA-06-5416-01 X 41031205 41031205 C T USP9X Missense_Mutation p.P1048S 0.22 tolerated(0.05) probably_damaging(0.986) TCGA-06-5416-01 X 41043379 41043379 G T USP9X Nonsense_Mutation p.E1093* 0.32 TCGA-06-5416-01 X 41075506 41075506 C T USP9X Missense_Mutation p.R1896C 0.29 tolerated(0.05) benign(0.007) TCGA-06-5416-01 X 41082530 41082530 C A USP9X Missense_Mutation p.S2209Y 0.66 deleterious(0) benign(0.305) TCGA-06-5416-01 X 41084207 41084207 C T USP9X Missense_Mutation p.L2322F 0.59 deleterious(0) probably_damaging(0.986) TCGA-06-5416-01 X 41333767 41333767 C T NYX Missense_Mutation p.S354F 0.26 tolerated(0.6) benign(0.002) TCGA-06-5416-01 X 41390433 41390433 C T CASK Missense_Mutation p.E778K 0.29 tolerated(0.07) benign(0.002) TCGA-06-5416-01 X 41485942 41485942 G A CASK Silent p.A310A 0.22 TCGA-06-5416-01 X 41530771 41530771 G T CASK Missense_Mutation p.L148I 0.34 tolerated(0.16) possibly_damaging(0.489) TCGA-06-5416-01 X 43590945 43590945 A C MAOA Missense_Mutation p.K267T 0.59 deleterious(0.04) benign(0.049) TCGA-06-5416-01 X 43628646 43628646 C T MAOB Missense_Mutation p.D419N 0.36 deleterious(0.01) benign(0.018) TCGA-06-5416-01 X 43809245 43809245 G A NDP Missense_Mutation p.H68Y 0.32 tolerated(0.99) benign(0.106) TCGA-06-5416-01 X 44037698 44037698 C T EFHC2 Missense_Mutation p.A622T 0.27 tolerated(0.11) benign(0.055) TCGA-06-5416-01 X 44088984 44088984 C A EFHC2 Missense_Mutation p.K554N 0.21 deleterious(0) possibly_damaging(0.729) TCGA-06-5416-01 X 44383435 44383435 T G FUNDC1 3'UTR 0.16 TCGA-06-5416-01 X 44703684 44703684 G A DUSP21 Silent p.T102T 0.24 TCGA-06-5416-01 X 46332374 46332374 C T KRBOX4 Missense_Mutation p.S148L 0.64 deleterious(0.03) possibly_damaging(0.902) TCGA-06-5416-01 X 46359511 46359511 C T ZNF674 Missense_Mutation p.A505T 0.19 tolerated(0.16) benign(0.045) TCGA-06-5416-01 X 46434153 46434153 C A CHST7 Missense_Mutation p.L263M 0.37 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 46434769 46434769 C T CHST7 Missense_Mutation p.A468V 0.29 tolerated(0.37) benign(0) TCGA-06-5416-01 X 46713166 46713166 C T RP2 Nonsense_Mutation p.R120* 0.26 TCGA-06-5416-01 X 47034440 47034440 C T RBM10 Silent p.F175F 0.28 TCGA-06-5416-01 X 47039642 47039642 C T RBM10 Missense_Mutation p.A365V 0.46 deleterious(0.01) possibly_damaging(0.475) TCGA-06-5416-01 X 47062353 47062353 G A UBA1 Silent p.G415G 0.37 TCGA-06-5416-01 X 47085218 47085218 G T CDK16 Missense_Mutation p.D302Y 0.60 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 47086262 47086262 G A CDK16 Silent p.P437P 0.61 TCGA-06-5416-01 X 47432284 47432284 G A SYN1 Silent p.F699F 0.62 TCGA-06-5416-01 X 47478813 47478813 G A SYN1 Silent p.G105G 0.44 TCGA-06-5416-01 X 47478962 47478962 C T SYN1 Missense_Mutation p.G56R 0.21 tolerated(0.52) benign(0.203) TCGA-06-5416-01 X 47705700 47705700 G A ZNF81 Missense_Mutation p.E12K 0.24 tolerated(0.15) benign(0) TCGA-06-5416-01 X 47774500 47774500 G A ZNF81 Missense_Mutation p.R152H 0.64 tolerated(1) benign(0) TCGA-06-5416-01 X 47775057 47775057 G A ZNF81 Missense_Mutation p.A338T 0.33 deleterious(0.05) probably_damaging(0.999) TCGA-06-5416-01 X 47775243 47775243 G T ZNF81 Missense_Mutation p.A400S 0.32 tolerated(0.18) possibly_damaging(0.888) TCGA-06-5416-01 X 47835818 47835818 C A ZNF182 Missense_Mutation p.Q556H 0.21 tolerated(0.16) probably_damaging(0.982) TCGA-06-5416-01 X 47842692 47842692 G A ZNF182 Silent p.V64V 0.31 TCGA-06-5416-01 X 47918967 47918967 C A ZNF630 Missense_Mutation p.E288D 0.31 deleterious(0.04) benign(0.363) TCGA-06-5416-01 X 47919223 47919223 G T ZNF630 Missense_Mutation p.P203H 0.23 tolerated(0.54) possibly_damaging(0.879) TCGA-06-5416-01 X 48053644 48053644 G A SSX5 Silent p.L108L 0.53 TCGA-06-5416-01 X 48163774 48163774 G T SSX9 Intron 0.26 TCGA-06-5416-01 X 48270282 48270282 A T SSX4B Missense_Mutation p.F32Y 0.11 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 X 48320146 48320146 A G SLC38A5 Missense_Mutation p.V270A 0.20 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 X 48370301 48370301 C A PORCN Silent p.T117T 0.20 TCGA-06-5416-01 X 48372956 48372956 T G PORCN Missense_Mutation p.S297A 0.27 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 48418843 48418843 A G TBC1D25 Missense_Mutation p.N516S 0.53 tolerated(0.78) benign(0.004) TCGA-06-5416-01 X 48457235 48457235 C T WDR13 Missense_Mutation p.R58W 0.22 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 48460327 48460327 C A WDR13 Missense_Mutation p.F329L 0.29 tolerated(0.4) benign(0.003) TCGA-06-5416-01 X 48463396 48463396 C T WDR13 Silent p.I478I 0.28 TCGA-06-5416-01 X 48661380 48661380 G T HDAC6 Missense_Mutation p.D66Y 0.29 deleterious(0.04) benign(0.062) TCGA-06-5416-01 X 48676650 48676650 G A HDAC6 Missense_Mutation p.R673H 0.50 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 X 48751470 48751470 C T TIMM17B Missense_Mutation p.D127N 0.27 deleterious(0) benign(0.399) TCGA-06-5416-01 X 48759234 48759234 C T PQBP1 Silent p.D69D 0.15 TCGA-06-5416-01 X 48762246 48762246 G A SLC35A2 Missense_Mutation p.R314C 0.28 deleterious(0.01) benign(0.002) TCGA-06-5416-01 X 48820046 48820046 C T KCND1 Silent p.K580K 0.47 TCGA-06-5416-01 X 48832724 48832724 C A GRIPAP1 Missense_Mutation p.D705Y 0.59 probably_damaging(0.99) TCGA-06-5416-01 X 48837687 48837687 G A GRIPAP1 Missense_Mutation p.R624W 0.32 possibly_damaging(0.821) TCGA-06-5416-01 X 48849966 48849966 C A GRIPAP1 Nonsense_Mutation p.E111* 0.35 TCGA-06-5416-01 X 48853764 48853764 G A GRIPAP1 Silent p.V68V 0.25 TCGA-06-5416-01 X 48933617 48933617 G T WDR45 Intron 0.31 TCGA-06-5416-01 X 48935706 48935706 C A WDR45 Missense_Mutation p.D17Y 0.25 deleterious(0) probably_damaging(0.951) TCGA-06-5416-01 X 49029570 49029570 T G PLP2 Missense_Mutation p.F64C 0.30 deleterious(0) probably_damaging(0.975) TCGA-06-5416-01 X 49034795 49034795 G A PRICKLE3 Silent p.I198I 0.57 TCGA-06-5416-01 X 49063189 49063189 C A CACNA1F Missense_Mutation p.G1798C 0.34 deleterious(0.03) benign(0.036) TCGA-06-5416-01 X 49063467 49063467 G A CACNA1F Missense_Mutation p.R1755W 0.33 tolerated(0.11) benign(0) TCGA-06-5416-01 X 49071985 49071985 G A CACNA1F Silent p.I1096I 0.15 TCGA-06-5416-01 X 49072865 49072865 G T CACNA1F Silent p.V1082V 0.18 TCGA-06-5416-01 X 49079435 49079435 G A CACNA1F Nonsense_Mutation p.R691* 0.64 TCGA-06-5416-01 X 49079500 49079500 A G CACNA1F Missense_Mutation p.I669T 0.36 deleterious(0) probably_damaging(0.916) TCGA-06-5416-01 X 49082529 49082529 C T CACNA1F Missense_Mutation p.R509H 0.21 deleterious(0.02) possibly_damaging(0.515) TCGA-06-5416-01 X 49084802 49084802 C T CACNA1F Missense_Mutation p.G309S 0.23 deleterious(0.02) probably_damaging(1) TCGA-06-5416-01 X 49104972 49104972 G T CCDC22 Missense_Mutation p.Q439H 0.29 tolerated(0.63) benign(0.033) TCGA-06-5416-01 X 49107891 49107891 G A FOXP3 Silent p.S400S 0.24 TCGA-06-5416-01 X 49112214 49112214 G A FOXP3 Missense_Mutation p.L233F 0.33 tolerated(0.06) probably_damaging(0.999) TCGA-06-5416-01 X 49137881 49137881 G T PPP1R3F Missense_Mutation p.E339D 0.26 deleterious(0.05) benign(0.015) TCGA-06-5416-01 X 49137893 49137893 G A PPP1R3F Silent p.T343T 0.21 TCGA-06-5416-01 X 49142421 49142421 C A PPP1R3F Silent p.L423L 0.33 TCGA-06-5416-01 X 49142538 49142538 G A PPP1R3F Silent p.S462S 0.17 TCGA-06-5416-01 X 49143413 49143413 C A PPP1R3F Missense_Mutation p.A754E 0.27 deleterious_low_confidence(0.04) benign(0.107) TCGA-06-5416-01 X 50037960 50037960 G T CCNB3 Missense_Mutation p.G101V 0.43 tolerated(0.09) probably_damaging(0.916) TCGA-06-5416-01 X 50052111 50052111 C A CCNB3 Silent p.S314S 0.26 TCGA-06-5416-01 X 50054390 50054390 C T CCNB3 Missense_Mutation p.A1074V 0.30 tolerated(0.52) benign(0.005) TCGA-06-5416-01 X 50146157 50146157 C T DGKK RNA 0.24 TCGA-06-5416-01 X 50146164 50146164 C T DGKK RNA 0.27 TCGA-06-5416-01 X 50146588 50146588 T G DGKK RNA 0.26 TCGA-06-5416-01 X 50376994 50376994 C T SHROOM4 Silent p.Q693Q 0.17 TCGA-06-5416-01 X 50377141 50377141 T G SHROOM4 Missense_Mutation p.K644N 0.23 tolerated(0.14) benign(0.021) TCGA-06-5416-01 X 50377364 50377364 C T SHROOM4 Missense_Mutation p.R570Q 0.32 deleterious(0.05) benign(0.059) TCGA-06-5416-01 X 50378622 50378622 C T SHROOM4 Missense_Mutation p.E151K 0.21 deleterious(0.01) probably_damaging(0.988) TCGA-06-5416-01 X 51150715 51150715 G A CXorf67 Missense_Mutation p.D283N 0.33 tolerated(0.31) benign(0.011) TCGA-06-5416-01 X 51150944 51150944 G A CXorf67 Missense_Mutation p.R359H 0.22 tolerated(0.24) possibly_damaging(0.714) TCGA-06-5416-01 X 51238916 51238916 C A NUDT11 Missense_Mutation p.K127N 0.19 tolerated(0.1) possibly_damaging(0.563) TCGA-06-5416-01 X 51238931 51238931 G A NUDT11 Silent p.V122V 0.19 TCGA-06-5416-01 X 51487538 51487538 T C GSPT2 Silent p.G272G 0.25 TCGA-06-5416-01 X 51488443 51488443 G A GSPT2 Missense_Mutation p.R574H 0.27 deleterious(0.01) possibly_damaging(0.888) TCGA-06-5416-01 X 51488576 51488576 A C GSPT2 Silent p.G618G 0.19 TCGA-06-5416-01 X 51639982 51639982 C T MAGED1 Missense_Mutation p.P467S 0.32 tolerated_low_confidence(0.11) unknown(0) TCGA-06-5416-01 X 52825543 52825543 C A SPANXN5 Missense_Mutation p.E68D 0.33 tolerated(0.26) possibly_damaging(0.86) TCGA-06-5416-01 X 52893879 52893879 C T XAGE3 Missense_Mutation p.G80S 0.05 tolerated(0.47) benign(0.061) TCGA-06-5416-01 X 53106611 53106611 C T GPR173 Missense_Mutation p.R270W 0.30 deleterious(0.01) probably_damaging(0.978) TCGA-06-5416-01 X 53106614 53106614 C T GPR173 Missense_Mutation p.R271W 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 53112257 53112257 C A TSPYL2 Silent p.R193R 0.44 TCGA-06-5416-01 X 53115434 53115434 C T TSPYL2 Silent p.Y620Y 0.19 TCGA-06-5416-01 X 53230751 53230751 C T KDM5C Missense_Mutation p.R681Q 0.26 deleterious(0) probably_damaging(0.999) TCGA-06-5416-01 X 53243961 53243961 G A KDM5C Silent p.G344G 0.27 TCGA-06-5416-01 X 53432489 53432489 G A SMC1A Missense_Mutation p.A616V 0.60 deleterious(0.04) possibly_damaging(0.676) TCGA-06-5416-01 X 53436136 53436136 G A SMC1A Missense_Mutation p.R468W 0.26 deleterious(0.02) possibly_damaging(0.791) TCGA-06-5416-01 X 53439194 53439194 G A SMC1A Silent p.D288D 0.30 TCGA-06-5416-01 X 53561048 53561048 G A HUWE1 Silent p.L4314L 0.64 TCGA-06-5416-01 X 53563621 53563621 C A HUWE1 Missense_Mutation p.V4049L 0.20 unknown(0) TCGA-06-5416-01 X 53573503 53573503 G A HUWE1 Silent p.N3603N 0.29 TCGA-06-5416-01 X 53575174 53575174 C A HUWE1 Nonsense_Mutation p.E3366* 0.17 TCGA-06-5416-01 X 53576003 53576003 C T HUWE1 Missense_Mutation p.G3318S 0.39 benign(0) TCGA-06-5416-01 X 53585954 53585954 C A HUWE1 Missense_Mutation p.E2661D 0.32 benign(0.217) TCGA-06-5416-01 X 53602658 53602658 C T HUWE1 Missense_Mutation p.R1992Q 0.29 possibly_damaging(0.538) TCGA-06-5416-01 X 53607893 53607893 G A HUWE1 Missense_Mutation p.R1872C 0.29 probably_damaging(0.996) TCGA-06-5416-01 X 53634651 53634651 C T HUWE1 Missense_Mutation p.V777M 0.15 probably_damaging(0.987) TCGA-06-5416-01 X 53654397 53654397 T C HUWE1 Missense_Mutation p.T485A 0.28 benign(0.004) TCGA-06-5416-01 X 53657950 53657950 A C HUWE1 Missense_Mutation p.F267V 0.56 probably_damaging(0.998) TCGA-06-5416-01 X 53672316 53672316 G T HUWE1 Missense_Mutation p.L151M 0.29 probably_damaging(0.968) TCGA-06-5416-01 X 53674463 53674463 C A HUWE1 Missense_Mutation p.D67Y 0.24 possibly_damaging(0.781) TCGA-06-5416-01 X 53681073 53681073 G A HUWE1 Intron 0.15 TCGA-06-5416-01 X 53966842 53966842 G T PHF8 Silent p.A955A 0.24 TCGA-06-5416-01 X 54040945 54040945 G A PHF8 Silent p.V252V 0.51 TCGA-06-5416-01 X 54161967 54161967 C T FAM120C Silent p.K443K 0.59 TCGA-06-5416-01 X 54209105 54209105 C T FAM120C Missense_Mutation p.G176D 0.67 tolerated(0.89) benign(0.369) TCGA-06-5416-01 X 54276501 54276501 C A WNK3 Missense_Mutation p.R880I 0.24 deleterious(0) possibly_damaging(0.713) TCGA-06-5416-01 X 54324634 54324634 T C WNK3 Missense_Mutation p.T458A 0.54 deleterious(0.04) benign(0.024) TCGA-06-5416-01 X 54337554 54337554 C A WNK3 Missense_Mutation p.K236N 0.56 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 54491935 54491935 C T FGD1 Missense_Mutation p.D529N 0.32 deleterious(0) probably_damaging(0.996) TCGA-06-5416-01 X 54570700 54570700 C T GNL3L Missense_Mutation p.R191W 0.27 deleterious(0) possibly_damaging(0.708) TCGA-06-5416-01 X 54784711 54784711 T C ITIH6 Missense_Mutation p.Y599C 0.62 deleterious(0) probably_damaging(0.969) TCGA-06-5416-01 X 54784731 54784731 G A ITIH6 Silent p.V592V 0.25 TCGA-06-5416-01 X 54840831 54840831 G A MAGED2 Intron 0.30 TCGA-06-5416-01 X 54957205 54957205 G A TRO Missense_Mutation p.E1350K 0.20 tolerated_low_confidence(0.1) possibly_damaging(0.697) TCGA-06-5416-01 X 54957290 54957290 G A TRO Missense_Mutation p.C1378Y 0.22 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-06-5416-01 X 54987295 54987295 G T PFKFB1 Missense_Mutation p.F93L 0.57 benign(0.058) TCGA-06-5416-01 X 54989696 54989696 T C PFKFB1 Missense_Mutation p.T73A 0.30 probably_damaging(0.998) TCGA-06-5416-01 X 55035757 55035757 C T ALAS2 Nonsense_Mutation p.W540* 0.53 TCGA-06-5416-01 X 55513111 55513111 C A USP51 3'UTR 0.21 TCGA-06-5416-01 X 55513886 55513886 A G USP51 Missense_Mutation p.V496A 0.25 deleterious(0.01) benign(0.433) TCGA-06-5416-01 X 56311026 56311026 G T KLF8 3'UTR 0.79 TCGA-06-5416-01 X 56590661 56590661 G A UBQLN2 Missense_Mutation p.A119T 0.20 tolerated(0.56) benign(0.008) TCGA-06-5416-01 X 56590956 56590956 G A UBQLN2 Missense_Mutation p.R217K 0.30 deleterious(0.01) benign(0.222) TCGA-06-5416-01 X 56592168 56592168 C T UBQLN2 Missense_Mutation p.S621F 0.33 deleterious(0.03) unknown(0) TCGA-06-5416-01 X 57021267 57021267 C T SPIN3 Silent p.R38R 0.59 TCGA-06-5416-01 X 57620131 57620131 G A ZXDB Silent p.P550P 0.45 TCGA-06-5416-01 X 57935507 57935507 A G ZXDA Missense_Mutation p.F450L 0.37 deleterious(0) probably_damaging(0.994) TCGA-06-5416-01 X 57936561 57936561 G A ZXDA Silent p.G98G 0.22 TCGA-06-5416-01 X 5821316 5821316 T G NLGN4X Missense_Mutation p.Y468S 0.29 deleterious(0.04) probably_damaging(1) TCGA-06-5416-01 X 5821347 5821347 C T NLGN4X Missense_Mutation p.D458N 0.33 tolerated(0.31) probably_damaging(0.996) TCGA-06-5416-01 X 5947453 5947453 T C NLGN4X Missense_Mutation p.K165E 0.29 tolerated(0.49) benign(0.108) TCGA-06-5416-01 X 63406186 63406186 C A AMER1 3'UTR 0.31 TCGA-06-5416-01 X 63412101 63412101 T C AMER1 Missense_Mutation p.T356A 0.24 tolerated(1) benign(0.444) TCGA-06-5416-01 X 63557202 63557202 G T MTMR8 Nonsense_Mutation p.C349* 0.54 TCGA-06-5416-01 X 64137734 64137734 T A ZC4H2 Missense_Mutation p.I202L 0.73 deleterious(0) probably_damaging(0.972) TCGA-06-5416-01 X 64708705 64708705 G T ZC3H12B Missense_Mutation p.E8D 0.20 deleterious_low_confidence(0.01) benign(0.029) TCGA-06-5416-01 X 64718974 64718974 C T ZC3H12B Missense_Mutation p.R282W 0.23 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 64748147 64748147 C T LAS1L Missense_Mutation p.E317K 0.25 deleterious(0.04) probably_damaging(0.984) TCGA-06-5416-01 X 64959653 64959653 C T MSN Silent p.I544I 0.27 TCGA-06-5416-01 X 64959669 64959669 C T MSN Nonsense_Mutation p.R550* 0.26 TCGA-06-5416-01 X 65242674 65242674 C A VSIG4 Intron 0.21 TCGA-06-5416-01 X 65253316 65253316 G A VSIG4 Missense_Mutation p.L138F 0.05 tolerated(0.43) benign(0.016) TCGA-06-5416-01 X 65417625 65417625 T C HEPH Silent p.C588C 0.28 TCGA-06-5416-01 X 65418856 65418856 C T HEPH Missense_Mutation p.S671F 0.27 deleterious(0) probably_damaging(0.995) TCGA-06-5416-01 X 65420502 65420502 G A HEPH Missense_Mutation p.G716D 0.67 deleterious(0) probably_damaging(0.946) TCGA-06-5416-01 X 65428084 65428084 G A HEPH Silent p.E907E 0.52 TCGA-06-5416-01 X 66931428 66931428 C T AR Silent p.H690H 0.58 TCGA-06-5416-01 X 66943857 66943857 C A AR 3'UTR 0.64 TCGA-06-5416-01 X 67937832 67937832 C T STARD8 Missense_Mutation p.P359L 0.22 deleterious(0) possibly_damaging(0.736) TCGA-06-5416-01 X 67938434 67938434 G A STARD8 Missense_Mutation p.D560N 0.27 deleterious(0) probably_damaging(0.973) TCGA-06-5416-01 X 67940237 67940237 G A STARD8 Missense_Mutation p.R674H 0.40 tolerated(0.06) benign(0.013) TCGA-06-5416-01 X 67940870 67940870 C T STARD8 Silent p.Y718Y 0.29 TCGA-06-5416-01 X 68058627 68058627 T C EFNB1 Missense_Mutation p.V99A 0.12 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 X 68060475 68060475 C T EFNB1 Missense_Mutation p.A340V 0.25 deleterious(0.01) possibly_damaging(0.51) TCGA-06-5416-01 X 68382228 68382228 T C PJA1 Missense_Mutation p.H285R 0.26 tolerated(1) benign(0.002) TCGA-06-5416-01 X 69282578 69282578 C T OTUD6A Silent p.D68D 0.26 TCGA-06-5416-01 X 69282679 69282679 A C OTUD6A Missense_Mutation p.E102A 0.33 tolerated(1) benign(0.001) TCGA-06-5416-01 X 69282882 69282882 C T OTUD6A Silent p.L170L 0.31 TCGA-06-5416-01 X 69354394 69354394 G A IGBP1 Silent p.E70E 0.58 TCGA-06-5416-01 X 69368675 69368675 A C IGBP1 Missense_Mutation p.N248T 0.26 deleterious(0) possibly_damaging(0.474) TCGA-06-5416-01 X 69397373 69397373 G T DGAT2L6 5'UTR 0.29 TCGA-06-5416-01 X 69397448 69397448 C T DGAT2L6 Nonsense_Mutation p.R6* 0.27 TCGA-06-5416-01 X 69419713 69419713 G A DGAT2L6 Missense_Mutation p.R83Q 0.27 tolerated(0.2) benign(0.002) TCGA-06-5416-01 X 69455633 69455633 C T AWAT1 Silent p.Y48Y 0.61 TCGA-06-5416-01 X 69479077 69479077 C T P2RY4 Missense_Mutation p.R133H 0.23 deleterious(0.02) probably_damaging(0.919) TCGA-06-5416-01 X 69479145 69479145 G A P2RY4 Silent p.F110F 0.18 TCGA-06-5416-01 X 69489988 69489988 C T ARR3 Nonsense_Mutation p.R47* 0.18 TCGA-06-5416-01 X 69500995 69500995 C A ARR3 Intron 0.61 TCGA-06-5416-01 X 69501078 69501078 A C ARR3 Intron 0.47 TCGA-06-5416-01 X 69521887 69521887 C A KIF4A Silent p.I218I 0.32 TCGA-06-5416-01 X 69626141 69626141 G A KIF4A Silent p.Q1003Q 0.21 TCGA-06-5416-01 X 69626793 69626793 C T KIF4A Silent p.I1041I 0.30 TCGA-06-5416-01 X 69649822 69649822 C T GDPD2 Missense_Mutation p.R406C 0.36 deleterious(0.03) possibly_damaging(0.836) TCGA-06-5416-01 X 69652945 69652945 C T GDPD2 3'UTR 0.28 TCGA-06-5416-01 X 69942468 69942469 - T TEX11 Frame_Shift_Ins p.R350Kfs*14 0.22 TCGA-06-5416-01 X 69964058 69964058 T G TEX11 Missense_Mutation p.D250A 0.24 deleterious(0.02) possibly_damaging(0.686) TCGA-06-5416-01 X 70145776 70145776 C T SLC7A3 Missense_Mutation p.G583S 0.21 tolerated(0.14) benign(0.187) TCGA-06-5416-01 X 70147678 70147678 G T SLC7A3 Missense_Mutation p.A338D 0.30 deleterious(0) probably_damaging(0.988) TCGA-06-5416-01 X 70321499 70321499 T C FOXO4 Silent p.D473D 0.34 TCGA-06-5416-01 X 70342161 70342161 C T MED12 Missense_Mutation p.P405S 0.27 possibly_damaging(0.846) TCGA-06-5416-01 X 70347830 70347830 C T MED12 Silent p.I1023I 0.61 TCGA-06-5416-01 X 70389753 70389753 C T NLGN3 Missense_Mutation p.R785C 0.36 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-06-5416-01 X 70444013 70444013 C A GJB1 Silent p.V152V 0.59 TCGA-06-5416-01 X 70465300 70465300 C A ZMYM3 Nonsense_Mutation p.E966* 0.21 TCGA-06-5416-01 X 70587989 70587989 G A TAF1 Silent p.T127T 0.29 TCGA-06-5416-01 X 70596797 70596797 C T TAF1 Intron 0.27 TCGA-06-5416-01 X 70613205 70613205 G T TAF1 Nonsense_Mutation p.E1056* 0.27 TCGA-06-5416-01 X 70614084 70614084 G A TAF1 Missense_Mutation p.R1152Q 0.28 tolerated(0.08) probably_damaging(0.975) TCGA-06-5416-01 X 70641205 70641205 C A TAF1 Silent p.L1497L 0.57 TCGA-06-5416-01 X 70824103 70824103 G A ACRC Missense_Mutation p.D326N 0.27 unknown(0) TCGA-06-5416-01 X 70825519 70825519 A G ACRC Missense_Mutation p.K469R 0.23 unknown(0) TCGA-06-5416-01 X 70832293 70832293 G A ACRC Nonsense_Mutation p.W613* 0.30 TCGA-06-5416-01 X 70837190 70837190 T C CXCR3 Silent p.P91P 0.32 TCGA-06-5416-01 X 71349701 71349701 G A RGAG4 Missense_Mutation p.R564C 0.57 tolerated_low_confidence(0.1) unknown(0) TCGA-06-5416-01 X 71349755 71349755 G A RGAG4 Missense_Mutation p.R546C 0.32 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 X 71349794 71349794 G A RGAG4 Missense_Mutation p.R533C 0.60 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 X 71349836 71349836 G A RGAG4 Missense_Mutation p.P519S 0.21 deleterious_low_confidence(0) unknown(0) TCGA-06-5416-01 X 71350424 71350424 G A RGAG4 Nonsense_Mutation p.R323* 0.28 TCGA-06-5416-01 X 71350484 71350484 C T RGAG4 Missense_Mutation p.E303K 0.24 tolerated(0.23) probably_damaging(0.986) TCGA-06-5416-01 X 71350667 71350667 G A RGAG4 Missense_Mutation p.R242C 0.28 deleterious(0.04) benign(0.298) TCGA-06-5416-01 X 7137702 7137702 G A STS 5'UTR 0.26 TCGA-06-5416-01 X 71417446 71417446 C T PIN4 3'UTR 0.31 TCGA-06-5416-01 X 71425951 71425951 A C ERCC6L Missense_Mutation p.I889S 0.23 tolerated(0.18) benign(0.004) TCGA-06-5416-01 X 71426604 71426604 G T ERCC6L Silent p.I671I 0.31 TCGA-06-5416-01 X 71427028 71427028 G A ERCC6L Missense_Mutation p.S530F 0.31 deleterious(0) possibly_damaging(0.823) TCGA-06-5416-01 X 71427586 71427586 C A ERCC6L Missense_Mutation p.R344I 0.31 tolerated(0.19) benign(0.094) TCGA-06-5416-01 X 71521909 71521909 G T CITED1 Silent p.S108S 0.22 TCGA-06-5416-01 X 71792597 71792597 C A HDAC8 Missense_Mutation p.E5D 0.24 tolerated_low_confidence(0.12) benign(0) TCGA-06-5416-01 X 71872394 71872394 C A PHKA1 Missense_Mutation p.E415D 0.19 tolerated(0.16) benign(0.219) TCGA-06-5416-01 X 7194010 7194010 C A STS Missense_Mutation p.F280L 0.46 deleterious(0.02) benign(0.124) TCGA-06-5416-01 X 7252084 7252084 T G STS Missense_Mutation p.D438E 0.60 tolerated(1) benign(0) TCGA-06-5416-01 X 72667154 72667154 G A CDX4 Missense_Mutation p.G22E 0.25 tolerated(0.08) benign(0.062) TCGA-06-5416-01 X 7268396 7268396 C T STS 3'UTR 0.80 TCGA-06-5416-01 X 72783298 72783298 G T CHIC1 Nonsense_Mutation p.E60* 0.23 TCGA-06-5416-01 X 72797244 72797244 T C CHIC1 Missense_Mutation p.F100L 0.26 deleterious(0) probably_damaging(0.944) TCGA-06-5416-01 X 73040823 73040823 C T XIST RNA 0.30 TCGA-06-5416-01 X 73044561 73044561 C T XIST RNA 0.26 TCGA-06-5416-01 X 73044958 73044958 T C XIST RNA 0.24 TCGA-06-5416-01 X 73046529 73046529 C T XIST RNA 0.27 TCGA-06-5416-01 X 73046735 73046735 C T XIST RNA 0.25 TCGA-06-5416-01 X 73066643 73066643 A G XIST RNA 0.54 TCGA-06-5416-01 X 73069463 73069463 T A XIST RNA 0.36 TCGA-06-5416-01 X 73071019 73071019 C T XIST RNA 0.04 TCGA-06-5416-01 X 73071467 73071467 C A XIST RNA 0.62 TCGA-06-5416-01 X 73524030 73524030 G A ZCCHC13 5'UTR 0.33 TCGA-06-5416-01 X 73751256 73751256 C T SLC16A2 Silent p.F496F 0.57 TCGA-06-5416-01 X 73751331 73751331 C T SLC16A2 Silent p.D521D 0.53 TCGA-06-5416-01 X 73962872 73962872 C T KIAA2022 Missense_Mutation p.R507K 0.21 tolerated(1) benign(0.002) TCGA-06-5416-01 X 75397651 75397651 G T PBDC1 Nonsense_Mutation p.G204* 0.34 TCGA-06-5416-01 X 75648907 75648907 G A MAGEE1 Missense_Mutation p.G195E 0.57 tolerated_low_confidence(0.13) probably_damaging(0.998) TCGA-06-5416-01 X 75650627 75650627 G T MAGEE1 Missense_Mutation p.K768N 0.25 deleterious(0) probably_damaging(0.998) TCGA-06-5416-01 X 76225829 76225829 C T MIR325 RNA 0.31 TCGA-06-5416-01 X 76764095 76764095 C T ATRX Missense_Mutation p.V2405I 0.26 benign(0.021) TCGA-06-5416-01 X 76776353 76776353 C T ATRX Silent p.A2371A 0.31 TCGA-06-5416-01 X 76912060 76912060 G A ATRX Missense_Mutation p.P1402S 0.24 probably_damaging(0.999) TCGA-06-5416-01 X 76931726 76931726 C T ATRX Silent p.E1268E 0.21 TCGA-06-5416-01 X 76937683 76937683 C T ATRX Missense_Mutation p.R1022Q 0.31 benign(0.014) TCGA-06-5416-01 X 76938229 76938229 C A ATRX Missense_Mutation p.R840I 0.27 benign(0.406) TCGA-06-5416-01 X 76939673 76939673 G A ATRX Silent p.L359L 0.24 TCGA-06-5416-01 X 76940000 76940000 G A ATRX Nonsense_Mutation p.R250* 0.54 TCGA-06-5416-01 X 77096749 77096749 G A MAGT1 Nonsense_Mutation p.R331* 0.29 TCGA-06-5416-01 X 77154996 77154996 C T COX7B 5'UTR 0.19 TCGA-06-5416-01 X 77225074 77225074 C T PGAM4 Missense_Mutation p.R21H 0.26 deleterious(0.03) benign(0.028) TCGA-06-5416-01 X 77287005 77287005 C A ATP7A Silent p.I1073I 0.27 TCGA-06-5416-01 X 77301856 77301856 C A ATP7A Missense_Mutation p.P1431H 0.30 tolerated(0.06) possibly_damaging(0.77) TCGA-06-5416-01 X 77392416 77392416 A G TAF9B Silent p.T159T 0.22 TCGA-06-5416-01 X 77528377 77528377 G T CYSLTR1 Nonsense_Mutation p.C289* 0.24 TCGA-06-5416-01 X 77912679 77912679 C A ZCCHC5 Missense_Mutation p.E413D 0.25 tolerated(0.09) benign(0.026) TCGA-06-5416-01 X 77913556 77913556 C T ZCCHC5 Missense_Mutation p.R121Q 0.29 tolerated(1) benign(0) TCGA-06-5416-01 X 78010625 78010625 C T LPAR4 Missense_Mutation p.L87F 0.61 deleterious(0.04) possibly_damaging(0.817) TCGA-06-5416-01 X 79286719 79286719 G T TBX22 3'UTR 0.22 TCGA-06-5416-01 X 79948488 79948488 G A BRWD3 Missense_Mutation p.P1072S 0.24 deleterious(0) probably_damaging(0.98) TCGA-06-5416-01 X 79975078 79975078 T G BRWD3 Silent p.R652R 0.27 TCGA-06-5416-01 X 79978266 79978266 G A BRWD3 Silent p.F557F 0.33 TCGA-06-5416-01 X 80049239 80049239 G A BRWD3 Silent p.Y71Y 0.21 TCGA-06-5416-01 X 83126580 83126580 T C CYLC1 Splice_Site p.X59_splice 0.51 TCGA-06-5416-01 X 83724353 83724353 T G HDX Silent p.T126T 0.57 TCGA-06-5416-01 X 84329295 84329295 G A APOOL Missense_Mutation p.E206K 0.30 tolerated(0.25) benign(0.009) TCGA-06-5416-01 X 84363069 84363069 C A SATL1 Missense_Mutation p.R302S 0.27 tolerated(0.13) probably_damaging(0.974) TCGA-06-5416-01 X 84363389 84363389 G T SATL1 Missense_Mutation p.P196T 0.25 tolerated(0.64) possibly_damaging(0.803) TCGA-06-5416-01 X 84562210 84562210 C A POF1B Nonsense_Mutation p.E375* 0.32 TCGA-06-5416-01 X 84606420 84606420 A G POF1B Missense_Mutation p.F159S 0.31 tolerated_low_confidence(0.25) possibly_damaging(0.699) TCGA-06-5416-01 X 8536278 8536278 T G KAL1 Missense_Mutation p.N401T 0.56 tolerated(0.38) benign(0.008) TCGA-06-5416-01 X 85769348 85769348 C T DACH2 Silent p.T198T 0.23 TCGA-06-5416-01 X 85769372 85769372 G A DACH2 Silent p.S206S 0.33 TCGA-06-5416-01 X 86772817 86772817 G T KLHL4 5'UTR 0.33 TCGA-06-5416-01 X 8763412 8763412 C T FAM9A Missense_Mutation p.E180K 0.18 tolerated_low_confidence(0.09) possibly_damaging(0.801) TCGA-06-5416-01 X 8763438 8763438 G T FAM9A Missense_Mutation p.T171N 0.21 deleterious_low_confidence(0.01) benign(0.412) TCGA-06-5416-01 X 88008950 88008950 G A CPXCR1 Missense_Mutation p.A179T 0.30 deleterious(0.01) possibly_damaging(0.908) TCGA-06-5416-01 X 89177609 89177609 G A TGIF2LX Silent p.P175P 0.52 TCGA-06-5416-01 X 8997368 8997368 C T FAM9B Missense_Mutation p.G125R 0.40 tolerated_low_confidence(0.56) benign(0.013) TCGA-06-5416-01 X 92927102 92927102 C T NAP1L3 Missense_Mutation p.G401D 0.30 deleterious(0.04) probably_damaging(0.989) TCGA-06-5416-01 X 96203956 96203956 G A DIAPH2 Missense_Mutation p.R511Q 0.22 deleterious(0.01) unknown(0) TCGA-06-5416-01 X 96203993 96203993 G T DIAPH2 Missense_Mutation p.E523D 0.31 deleterious(0.04) unknown(0) TCGA-06-5416-01 X 9677678 9677678 G A TBL1X Nonsense_Mutation p.W439* 0.30 TCGA-06-5416-01 X 9862974 9862974 G T SHROOM2 Missense_Mutation p.E342D 0.25 tolerated(0.28) possibly_damaging(0.739) TCGA-06-5416-01 X 9864718 9864718 T C SHROOM2 Missense_Mutation p.S924P 0.42 deleterious(0) possibly_damaging(0.86) TCGA-06-5416-01 X 9905204 9905204 G A SHROOM2 Silent p.T1206T 0.24 TCGA-06-5416-01 X 9905680 9905680 G T SHROOM2 Missense_Mutation p.R1365M 0.18 deleterious(0) probably_damaging(0.997) TCGA-06-5416-01 X 99605662 99605662 C T PCDH19 Missense_Mutation p.R886Q 0.62 deleterious(0.04) probably_damaging(0.98) TCGA-06-5416-01 X 99657616 99657616 C T PCDH19 Missense_Mutation p.R841H 0.56 deleterious(0.02) probably_damaging(0.943) TCGA-06-5416-01 X 99661614 99661614 T C PCDH19 Missense_Mutation p.Y661C 0.23 tolerated(0.12) benign(0.033) TCGA-06-5416-01 X 99661915 99661915 G T PCDH19 Missense_Mutation p.P561T 0.21 deleterious(0) probably_damaging(1) TCGA-06-5416-01 X 99662387 99662387 G A PCDH19 Silent p.S403S 0.29 TCGA-06-5416-01 X 99848906 99848906 G A TNMD Silent p.E65E 0.32 TCGA-06-5416-01 X 99922336 99922336 C T SRPX2 Nonsense_Mutation p.R343* 0.27 TCGA-06-5416-01 X 99924338 99924338 C T SRPX2 Silent p.L397L 0.33 TCGA-06-5416-01 X 99934360 99934360 C A SYTL4 Missense_Mutation p.K536N 0.22 deleterious(0.01) possibly_damaging(0.453) TCGA-06-5417-01 10 103559019 103559021 TTC - MGEA5 In_Frame_Del p.E463del 0.51 TCGA-06-5417-01 10 88992612 88992612 C T NUTM2A Missense_Mutation p.T535M 0.43 tolerated(0.05) benign(0.181) TCGA-06-5417-01 11 108093328 108093328 G A NPAT 5'UTR 0.52 TCGA-06-5417-01 11 111166838 111166838 A G COLCA1 Silent p.A122A 0.49 TCGA-06-5417-01 11 116627935 116627935 G A BUD13 Missense_Mutation p.R565C 0.42 deleterious(0.04) benign(0.154) TCGA-06-5417-01 11 48328474 48328474 G T OR4S1 Missense_Mutation p.A234S 0.48 deleterious(0) probably_damaging(0.998) TCGA-06-5417-01 11 62343579 62343579 G A TUT1 Missense_Mutation p.P576S 0.34 deleterious(0.03) possibly_damaging(0.876) TCGA-06-5417-01 12 57563089 57563089 G - LRP1 Frame_Shift_Del 0.29 TCGA-06-5417-01 12 6424277 6424277 G A PLEKHG6 Missense_Mutation p.G134D 0.77 tolerated(0.24) benign(0.009) TCGA-06-5417-01 12 85450521 85450521 T C LRRIQ1 Silent p.A650A 0.29 TCGA-06-5417-01 12 95442924 95442924 G T NR2C1 Missense_Mutation p.H351N 0.36 tolerated(0.26) benign(0.001) TCGA-06-5417-01 12 96640864 96640864 C T ELK3 Silent p.G118G 0.50 TCGA-06-5417-01 14 25102156 25102156 G A GZMB Silent p.D56D 0.48 TCGA-06-5417-01 15 34137199 34137199 G T RYR3 Missense_Mutation p.R4478L 0.46 benign(0.087) TCGA-06-5417-01 15 63433763 63433763 A G LACTB Missense_Mutation p.E468G 0.46 deleterious(0.01) possibly_damaging(0.901) TCGA-06-5417-01 15 90808930 90808930 C T NGRN 5'Flank 0.37 TCGA-06-5417-01 16 1392020 1392020 G A BAIAP3 Silent p.A305A 0.58 TCGA-06-5417-01 16 4952435 4952435 T C PPL Missense_Mutation p.N137S 0.64 deleterious(0.02) possibly_damaging(0.805) TCGA-06-5417-01 17 26675209 26675209 C A POLDIP2 Silent p.R346R 0.38 TCGA-06-5417-01 17 37618715 37618716 - A CDK12 Frame_Shift_Ins p.S133Kfs*24 0.35 TCGA-06-5417-01 17 7577517 7577517 A C TP53 Missense_Mutation p.I255S 0.58 deleterious(0) probably_damaging(0.999) TCGA-06-5417-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.54 TCGA-06-5417-01 19 58772645 58772645 A C ZNF544 Missense_Mutation p.S225R 0.92 deleterious(0) benign(0.005) TCGA-06-5417-01 1 110950282 110950282 G A LAMTOR5 Silent p.A69A 0.44 TCGA-06-5417-01 1 111060530 111060530 G A KCNA10 Missense_Mutation p.P294S 0.54 deleterious(0) probably_damaging(1) TCGA-06-5417-01 1 152326101 152326101 T C FLG2 Silent p.R1387R 0.31 TCGA-06-5417-01 1 201966632 201966632 A T RNPEP Missense_Mutation p.N347I 0.39 deleterious(0.03) probably_damaging(0.999) TCGA-06-5417-01 1 213414537 213414537 T C RPS6KC1 Missense_Mutation p.F573S 0.41 tolerated(0.08) benign(0.028) TCGA-06-5417-01 1 24661135 24661135 G T GRHL3 Missense_Mutation p.G69C 0.05 deleterious(0.05) possibly_damaging(0.885) TCGA-06-5417-01 1 28907141 28907141 C T TRNAU1AP 3'Flank 0.48 TCGA-06-5417-01 1 78338781 78338781 G C FAM73A Silent p.L552L 0.38 TCGA-06-5417-01 1 84408356 84408356 A T TTLL7 Silent p.S171S 0.40 TCGA-06-5417-01 22 50615879 50615879 C A PANX2 Nonsense_Mutation p.C246* 0.30 TCGA-06-5417-01 2 207615789 207615789 G A MDH1B Silent p.D307D 0.37 TCGA-06-5417-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.40 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-06-5417-01 2 46603736 46603736 C - EPAS1 Frame_Shift_Del p.H366Tfs*2 0.27 TCGA-06-5417-01 2 54856159 54856159 C T SPTBN1 Missense_Mutation p.R630C 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5417-01 3 121230744 121230744 G C POLQ Missense_Mutation p.A534G 0.09 deleterious(0) possibly_damaging(0.718) TCGA-06-5417-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.49 deleterious(0.02) probably_damaging(0.959) TCGA-06-5417-01 3 184052651 184052651 C G EIF4G1 Missense_Mutation p.F1592L 0.44 deleterious(0) probably_damaging(0.999) TCGA-06-5417-01 3 78656067 78656070 TCTG - ROBO1 Frame_Shift_Del p.R1520Hfs*102 0.53 TCGA-06-5417-01 4 184210574 184210574 C - WWC2 Frame_Shift_Del p.T1057Kfs*11 0.29 TCGA-06-5417-01 4 25819779 25819779 C T SEL1L3 Silent p.L515L 0.38 TCGA-06-5417-01 4 39218764 39218764 A T WDR19 Missense_Mutation p.K420N 0.43 tolerated(0.18) benign(0.166) TCGA-06-5417-01 4 48494815 48494815 C G ZAR1 Missense_Mutation p.C332W 0.06 deleterious(0) probably_damaging(1) TCGA-06-5417-01 4 57890238 57890238 G A POLR2B Missense_Mutation p.R975H 0.61 deleterious(0) probably_damaging(1) TCGA-06-5417-01 5 110842033 110842033 T G STARD4 Silent p.G50G 0.41 TCGA-06-5417-01 5 145562190 145562190 G A LARS 5'UTR 0.78 TCGA-06-5417-01 5 80643615 80643615 T C ACOT12 Missense_Mutation p.T211A 0.49 tolerated(0.17) benign(0.026) TCGA-06-5417-01 6 152737569 152737569 A G SYNE1 Silent p.T2001T 0.44 TCGA-06-5417-01 6 21595085 21595085 C T SOX4 Missense_Mutation p.P107L 0.59 deleterious(0) probably_damaging(1) TCGA-06-5417-01 6 30893483 30893483 A G VARS2 Missense_Mutation p.Y1013C 0.45 deleterious(0) possibly_damaging(0.882) TCGA-06-5417-01 6 70411840 70411840 G C LMBRD1 Silent p.V307V 0.45 TCGA-06-5417-01 7 100187512 100187512 A G FBXO24 Intron 0.06 TCGA-06-5417-01 7 117431218 117431218 G A CTTNBP2 Missense_Mutation p.P678S 0.57 tolerated(0.22) benign(0.201) TCGA-06-5417-01 8 132966108 132966108 A G EFR3A Missense_Mutation p.K178E 0.28 deleterious(0) probably_damaging(0.998) TCGA-06-5417-01 8 71593354 71593354 G T XKR9 Missense_Mutation p.D21Y 0.43 deleterious(0) probably_damaging(1) TCGA-06-5417-01 9 107332296 107332296 T C OR13C8 Missense_Mutation p.F283S 0.09 tolerated(0.19) benign(0.212) TCGA-06-5417-01 9 37522884 37522884 T C FBXO10 Missense_Mutation p.Y623C 0.50 deleterious(0.02) probably_damaging(0.943) TCGA-06-5417-01 X 107840792 107840792 A G COL4A5 Silent p.G591G 0.54 TCGA-06-5417-01 X 108708484 108708484 C T GUCY2F Missense_Mutation p.A307T 0.58 deleterious(0) possibly_damaging(0.61) TCGA-06-5417-01 X 14027172 14027172 G A GEMIN8 Missense_Mutation p.R197C 0.28 deleterious(0.04) benign(0.259) TCGA-06-5417-01 X 35985840 35985840 C T CXorf22 Missense_Mutation p.R569C 0.28 tolerated(0.11) benign(0.006) TCGA-06-5417-01 X 44037748 44037748 C A EFHC2 Missense_Mutation p.R605L 0.18 deleterious(0) probably_damaging(0.98) TCGA-06-5417-01 X 46388335 46388335 T C ZNF674 Missense_Mutation p.T9A 0.35 deleterious(0.02) benign(0.01) TCGA-06-5417-01 X 64737941 64737941 G T LAS1L Missense_Mutation p.P618H 0.28 tolerated(0.53) benign(0.364) TCGA-06-5417-01 X 67943638 67943638 C G STARD8 Silent p.V990V 0.25 TCGA-06-5417-01 X 70469372 70469372 A G ZMYM3 Missense_Mutation p.L470P 0.55 deleterious(0) possibly_damaging(0.858) TCGA-06-5417-01 X 76778818 76778818 T C ATRX Missense_Mutation p.H2254R 0.52 probably_damaging(0.991) TCGA-06-5417-01 X 83724095 83724095 C - HDX Frame_Shift_Del p.K212Nfs*105 0.30 TCGA-06-5418-01 10 115610208 115610208 T C DCLRE1A Missense_Mutation p.Q219R 0.06 tolerated(0.06) benign(0.408) TCGA-06-5418-01 10 1284215 1284215 G A ADARB2 Missense_Mutation p.T447M 0.70 deleterious(0.02) possibly_damaging(0.672) TCGA-06-5418-01 10 89711993 89711993 C T PTEN Missense_Mutation p.P204L 0.52 deleterious(0.04) possibly_damaging(0.706) TCGA-06-5418-01 11 62434124 62434124 T C METTL12 Silent p.F108F 0.33 TCGA-06-5418-01 12 18242271 18242271 G A RERGL 5'UTR 0.33 TCGA-06-5418-01 12 55714789 55714789 C A OR6C1 Silent p.R136R 0.35 TCGA-06-5418-01 12 58120988 58120988 G A AGAP2 Silent p.R1035R 0.35 TCGA-06-5418-01 12 62785633 62785634 - A USP15 Frame_Shift_Ins p.R760Kfs*4 0.29 TCGA-06-5418-01 12 8758006 8758006 C T AICDA Missense_Mutation p.V78I 0.32 tolerated(0.32) benign(0.026) TCGA-06-5418-01 15 85259362 85259362 G A SEC11A 5'UTR 0.33 TCGA-06-5418-01 16 1478505 1478505 G A C16orf91 Missense_Mutation p.A49V 0.14 deleterious_low_confidence(0) benign(0.027) TCGA-06-5418-01 16 72832031 72832031 G A ZFHX3 Missense_Mutation p.S1517L 0.60 possibly_damaging(0.558) TCGA-06-5418-01 17 28576003 28576003 C T BLMH 3'UTR 0.36 TCGA-06-5418-01 17 40945618 40945618 C T WNK4 Silent p.N722N 0.25 TCGA-06-5418-01 17 649261 649261 G T GEMIN4 Missense_Mutation p.F674L 0.29 tolerated(1) benign(0.006) TCGA-06-5418-01 17 7702526 7702526 G A DNAH2 Missense_Mutation p.V2889M 0.34 possibly_damaging(0.824) TCGA-06-5418-01 19 43371451 43371451 G A PSG1 3'UTR 0.36 TCGA-06-5418-01 19 55045010 55045010 C T KIR3DX1 Missense_Mutation p.R44C 0.40 tolerated(0.1) probably_damaging(0.937) TCGA-06-5418-01 19 6495886 6495886 G A TUBB4A Silent p.Y208Y 0.33 TCGA-06-5418-01 1 104162189 104162189 G A AMY2A Missense_Mutation p.R176H 0.20 deleterious(0.01) possibly_damaging(0.777) TCGA-06-5418-01 1 152081245 152081245 C T TCHH Missense_Mutation p.R1483H 0.31 unknown(0) TCGA-06-5418-01 1 152082376 152082376 C T TCHH Missense_Mutation p.R1106Q 0.27 unknown(0) TCGA-06-5418-01 1 1689963 1689963 C T NADK Intron 0.29 TCGA-06-5418-01 1 169509611 169509611 G A F5 Missense_Mutation p.R1573C 0.35 deleterious(0) probably_damaging(0.975) TCGA-06-5418-01 1 201823997 201823997 C T IPO9 Missense_Mutation p.S286F 0.44 tolerated(0.7) benign(0.001) TCGA-06-5418-01 1 33478777 33478777 C T AK2 3'UTR 0.54 TCGA-06-5418-01 1 46976764 46976764 G A DMBX1 Missense_Mutation p.R164H 0.40 tolerated(0.17) benign(0) TCGA-06-5418-01 1 6311445 6311445 C T GPR153 Missense_Mutation p.R311Q 0.36 deleterious(0) benign(0.272) TCGA-06-5418-01 20 16337074 16337074 G A KIF16B Silent p.G1174G 0.40 TCGA-06-5418-01 21 46311847 46311847 G A ITGB2 Missense_Mutation p.A430V 0.48 tolerated(0.07) possibly_damaging(0.907) TCGA-06-5418-01 21 47355174 47355174 C T PCBP3 Silent p.D288D 0.22 TCGA-06-5418-01 2 144899603 144899603 C T GTDC1 Missense_Mutation p.V123I 0.29 tolerated(0.17) possibly_damaging(0.759) TCGA-06-5418-01 2 171902709 171902710 - GG TLK1 Frame_Shift_Ins p.F382Pfs*11 0.31 TCGA-06-5418-01 2 54856719 54856719 G A SPTBN1 Silent p.E816E 0.39 TCGA-06-5418-01 3 10183867 10183867 C T VHL Silent p.Y112Y 0.40 TCGA-06-5418-01 3 120123732 120123732 C T FSTL1 Silent p.T183T 0.36 TCGA-06-5418-01 3 9799491 9799491 T A CAMK1 Nonsense_Mutation p.K318* 0.29 TCGA-06-5418-01 3 98188932 98188932 C T OR5K1 Missense_Mutation p.S171L 0.31 deleterious(0.01) benign(0.018) TCGA-06-5418-01 4 122833104 122833104 G C TRPC3 Missense_Mutation p.P496A 0.35 tolerated(0.1) benign(0.019) TCGA-06-5418-01 4 141600954 141600954 T A TBC1D9 Missense_Mutation p.D135V 0.49 deleterious(0) probably_damaging(0.997) TCGA-06-5418-01 4 39000377 39000377 G A TMEM156 Missense_Mutation p.R81C 0.33 deleterious(0) possibly_damaging(0.523) TCGA-06-5418-01 4 69111311 69111311 C T TMPRSS11B 5'UTR 0.42 TCGA-06-5418-01 4 69973993 69973993 G A UGT2B7 Silent p.S421S 0.33 TCGA-06-5418-01 5 1260707 1260707 C T TERT Missense_Mutation p.R951Q 0.29 tolerated(0.34) benign(0.009) TCGA-06-5418-01 5 160753407 160753407 G A GABRB2 Missense_Mutation p.R387W 0.36 deleterious(0.02) benign(0.206) TCGA-06-5418-01 5 71752388 71752388 C T ZNF366 Missense_Mutation p.R456Q 0.31 deleterious(0.01) possibly_damaging(0.718) TCGA-06-5418-01 6 51941108 51941108 G A PKHD1 Silent p.I138I 0.32 TCGA-06-5418-01 6 73843328 73843328 C T KCNQ5 Missense_Mutation p.R497C 0.37 deleterious(0) probably_damaging(0.987) TCGA-06-5418-01 7 100680821 100680821 C T MUC17 Missense_Mutation p.R2042W 0.19 unknown(0) TCGA-06-5418-01 7 106508855 106508855 C T PIK3CG Silent p.G283G 0.17 TCGA-06-5418-01 7 20698756 20698756 G A ABCB5 Intron 0.20 TCGA-06-5418-01 7 38471801 38471801 C T AMPH Nonsense_Mutation p.W382* 0.23 TCGA-06-5418-01 7 45717648 45717648 G A ADCY1 Missense_Mutation p.E596K 0.22 tolerated(0.08) possibly_damaging(0.591) TCGA-06-5418-01 7 53103406 53103406 C T POM121L12 Silent p.N14N 0.27 TCGA-06-5418-01 7 72744235 72744235 C T FKBP6 Silent p.Y116Y 0.34 TCGA-06-5418-01 9 111617172 111617172 T C ACTL7B Missense_Mutation p.M347V 0.40 deleterious(0.03) benign(0.197) TCGA-06-5418-01 9 133943586 133943586 C T LAMC3 Silent p.F905F 0.43 TCGA-06-5418-01 X 106097468 106097468 G A TBC1D8B Missense_Mutation p.R765H 0.58 deleterious(0) probably_damaging(0.987) TCGA-06-5418-01 X 1464293 1464293 T - IL3RA Frame_Shift_Del p.I50Tfs*14 0.42 TCGA-06-5418-01 X 99662549 99662551 CAG - PCDH19 In_Frame_Del p.L349del 0.68 TCGA-06-5856-01 10 85962739 85962739 G T CDHR1 Missense_Mutation p.G215C 0.19 deleterious(0) probably_damaging(1) TCGA-06-5856-01 11 123513193 123513193 T C SCN3B Missense_Mutation p.K136E 0.64 tolerated(0.93) benign(0.003) TCGA-06-5856-01 11 62286891 62286891 C G AHNAK Missense_Mutation p.V5000L 0.06 benign(0.012) TCGA-06-5856-01 11 95580911 95580911 G A MTMR2 Silent p.N382N 0.20 TCGA-06-5856-01 12 19285373 19285373 A T PLEKHA5 Missense_Mutation p.R72S 0.05 tolerated(0.2) benign(0.174) TCGA-06-5856-01 12 3788105 3788105 A G EFCAB4B Missense_Mutation p.L167P 0.03 deleterious(0) probably_damaging(0.999) TCGA-06-5856-01 12 4771765 4771765 T C NDUFA9 Missense_Mutation p.F207L 0.10 deleterious(0) probably_damaging(0.92) TCGA-06-5856-01 12 55759176 55759176 G T OR6C75 Silent p.G94G 0.11 TCGA-06-5856-01 12 56578637 56578637 C G SMARCC2 Missense_Mutation p.K161N 0.06 deleterious(0.02) benign(0.403) TCGA-06-5856-01 12 58152353 58152353 C A MARCH9 Silent p.I238I 0.02 TCGA-06-5856-01 12 68552011 68552011 T C IFNG Missense_Mutation p.N48S 0.77 tolerated(0.06) benign(0.015) TCGA-06-5856-01 12 70732228 70732228 G C CNOT2 Missense_Mutation p.L302F 0.19 tolerated(0.18) possibly_damaging(0.757) TCGA-06-5856-01 12 70732315 70732315 G C CNOT2 Missense_Mutation p.Q331H 0.20 tolerated(0.13) possibly_damaging(0.77) TCGA-06-5856-01 14 44974567 44974567 C A FSCB Missense_Mutation p.A542S 0.14 tolerated(0.08) benign(0.094) TCGA-06-5856-01 14 69349203 69349203 A C ACTN1 Missense_Mutation p.I642S 0.15 deleterious(0) probably_damaging(0.917) TCGA-06-5856-01 14 74060458 74060458 C A ACOT4 Silent p.L170L 0.29 TCGA-06-5856-01 15 20193176 20193176 A C IGHV3OR15-7 Missense_Mutation p.V31G 0.46 deleterious_low_confidence(0.02) possibly_damaging(0.731) TCGA-06-5856-01 15 40675035 40675035 G C KNSTRN 5'UTR 0.14 TCGA-06-5856-01 15 42107465 42107465 C T MAPKBP1 Silent p.P399P 0.45 TCGA-06-5856-01 16 30080687 30080687 C T ALDOA Missense_Mutation p.R255C 0.09 tolerated(0.05) benign(0.027) TCGA-06-5856-01 17 3772866 3772866 G A CAMKK1 Missense_Mutation p.S457L 0.07 tolerated(0.31) benign(0.003) TCGA-06-5856-01 17 60061549 60061549 C A MED13 Missense_Mutation p.M957I 0.47 tolerated(0.39) benign(0.297) TCGA-06-5856-01 17 77769275 77769275 G A CBX8 Missense_Mutation p.S110L 0.46 deleterious(0.02) possibly_damaging(0.885) TCGA-06-5856-01 18 33077703 33077703 A T INO80C Missense_Mutation p.S46T 0.09 tolerated_low_confidence(0.17) benign(0.003) TCGA-06-5856-01 18 51820790 51820790 G A POLI Missense_Mutation p.A726T 0.60 tolerated(0.08) benign(0.141) TCGA-06-5856-01 19 10506731 10506731 A T CDC37 Missense_Mutation p.L84Q 0.42 deleterious(0.02) possibly_damaging(0.765) TCGA-06-5856-01 19 14029731 14029731 C A CC2D1A Missense_Mutation p.P342H 0.46 deleterious(0) probably_damaging(0.954) TCGA-06-5856-01 19 17212559 17212559 G A MYO9B Missense_Mutation p.R11H 0.75 tolerated(0.07) benign(0.002) TCGA-06-5856-01 19 5790075 5790075 A C DUS3L Missense_Mutation p.C124G 0.08 deleterious(0) probably_damaging(1) TCGA-06-5856-01 19 8651442 8651442 C A ADAMTS10 Missense_Mutation p.M801I 0.32 deleterious(0) benign(0.05) TCGA-06-5856-01 1 118539227 118539227 A T SPAG17 Missense_Mutation p.V1639D 0.37 deleterious(0) probably_damaging(0.991) TCGA-06-5856-01 1 120337009 120337009 G T REG4 3'UTR 0.21 TCGA-06-5856-01 1 147092093 147092093 T G BCL9 Missense_Mutation p.M711R 0.06 deleterious(0.03) possibly_damaging(0.769) TCGA-06-5856-01 1 152732521 152732521 T G KPRP Missense_Mutation p.Y153D 0.55 deleterious(0) probably_damaging(0.974) TCGA-06-5856-01 1 153657481 153657481 G A NPR1 Missense_Mutation p.R509Q 0.23 deleterious(0) possibly_damaging(0.862) TCGA-06-5856-01 1 207235917 207235917 G A PFKFB2 Intron 0.60 TCGA-06-5856-01 1 228487028 228487028 C A OBSCN Missense_Mutation p.Q4427K 0.14 benign(0.183) TCGA-06-5856-01 1 230979428 230979428 C T C1orf198 Missense_Mutation p.G200E 0.35 tolerated(0.27) probably_damaging(0.987) TCGA-06-5856-01 1 248039828 248039828 C G TRIM58 3'UTR 0.39 TCGA-06-5856-01 1 248366725 248366725 C A OR2M3 Missense_Mutation p.A119D 0.04 deleterious(0) possibly_damaging(0.768) TCGA-06-5856-01 1 35580838 35580841 TCAG - ZMYM1 Frame_Shift_Del p.S1137Rfs*2 0.32 TCGA-06-5856-01 1 71318432 71318432 G A PTGER3 3'UTR 0.14 TCGA-06-5856-01 1 84967630 84967630 C A GNG5 Missense_Mutation p.L35F 0.14 deleterious(0.02) possibly_damaging(0.469) TCGA-06-5856-01 20 30661155 30661155 A T HCK Missense_Mutation p.I73F 0.27 tolerated(0.84) benign(0.002) TCGA-06-5856-01 20 42973947 42973947 C T R3HDML Silent p.T186T 0.06 TCGA-06-5856-01 20 43851147 43851147 C T SEMG2 Missense_Mutation p.R292C 0.40 deleterious(0.01) possibly_damaging(0.84) TCGA-06-5856-01 22 21349003 21349003 T G LZTR1 Missense_Mutation p.L591R 0.11 deleterious(0.01) probably_damaging(0.996) TCGA-06-5856-01 22 22042378 22042378 C A PPIL2 Missense_Mutation p.P335H 0.18 deleterious(0) probably_damaging(0.971) TCGA-06-5856-01 2 105859160 105859160 C T GPR45 Missense_Mutation p.P282L 0.32 deleterious(0) probably_damaging(1) TCGA-06-5856-01 2 27799823 27799823 G A C2orf16 Silent p.Q128Q 0.34 TCGA-06-5856-01 2 39560698 39560698 T G MAP4K3 Missense_Mutation p.L144F 0.10 deleterious(0) probably_damaging(0.924) TCGA-06-5856-01 2 60688972 60688972 G C BCL11A Missense_Mutation p.P359A 0.20 tolerated(0.07) probably_damaging(0.991) TCGA-06-5856-01 3 9989638 9989638 G A PRRT3 Missense_Mutation p.P407S 0.26 deleterious(0.01) probably_damaging(0.933) TCGA-06-5856-01 4 159790265 159790265 C G FNIP2 Missense_Mutation p.A826G 0.38 tolerated(0.28) benign(0.003) TCGA-06-5856-01 4 170345795 170345795 C A NEK1 Missense_Mutation p.R1044L 0.24 tolerated(0.09) probably_damaging(0.917) TCGA-06-5856-01 4 71346565 71346565 A G MUC7 Missense_Mutation p.H35R 0.19 tolerated(0.37) benign(0.261) TCGA-06-5856-01 5 16668401 16668401 G A MYO10 Silent p.L2020L 0.50 TCGA-06-5856-01 5 481703 481703 G A SLC9A3 Silent p.I498I 0.10 TCGA-06-5856-01 6 131992385 131992385 C T ENPP3 Intron 0.17 TCGA-06-5856-01 6 25726579 25726579 G T HIST1H2AA Silent p.L59L 0.76 TCGA-06-5856-01 6 35210070 35210072 GAG - SCUBE3 In_Frame_Del p.E504del 0.12 TCGA-06-5856-01 7 138719356 138719356 A G ZC3HAV1L Missense_Mutation p.L145P 0.37 deleterious(0) probably_damaging(0.969) TCGA-06-5856-01 7 45016656 45016656 C T MYO1G Missense_Mutation p.R37H 0.15 tolerated(0.07) benign(0.015) TCGA-06-5856-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.55 deleterious(0.02) probably_damaging(0.974) TCGA-06-5856-01 8 10467546 10467546 C T RP1L1 Silent p.A1354A 0.42 TCGA-06-5856-01 8 57358248 57358248 C T PENK Intron 0.13 TCGA-06-5856-01 9 35044886 35044886 T C C9orf131 Missense_Mutation p.C754R 0.38 deleterious(0.04) benign(0.069) TCGA-06-5856-01 9 4679887 4679887 C G CDC37L1 Silent p.G40G 0.23 TCGA-06-5856-01 9 5922764 5922764 G T KIAA2026 Missense_Mutation p.L1078I 0.64 tolerated(0.07) benign(0.05) TCGA-06-5856-01 9 97380079 97380079 C T FBP1 Missense_Mutation p.V133I 0.11 tolerated(1) benign(0.002) TCGA-06-5856-01 X 105011638 105011638 C T IL1RAPL2 Missense_Mutation p.T682I 0.27 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-06-5856-01 X 153141260 153141260 A C L1CAM Missense_Mutation p.L11R 0.67 deleterious_low_confidence(0) possibly_damaging(0.797) TCGA-06-5856-01 X 24229156 24229156 A C ZFX Missense_Mutation p.H694P 0.89 deleterious(0) probably_damaging(0.999) TCGA-06-5858-01 10 108923845 108923845 G T SORCS1 Missense_Mutation p.P147Q 0.69 tolerated(0.56) benign(0.013) TCGA-06-5858-01 10 125506288 125506288 G A CPXM2 Missense_Mutation p.R755C 0.75 deleterious_low_confidence(0.01) unknown(0) TCGA-06-5858-01 10 125622179 125622179 G A CPXM2 Missense_Mutation p.T155M 0.70 deleterious(0) probably_damaging(0.991) TCGA-06-5858-01 10 70097039 70097039 C T HNRNPH3 Missense_Mutation p.R21C 0.74 deleterious(0) unknown(0) TCGA-06-5858-01 10 86008738 86008738 G A RGR Silent p.A103A 0.66 TCGA-06-5858-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.76 TCGA-06-5858-01 10 95372697 95372697 A G PDE6C Missense_Mutation p.E72G 0.65 tolerated(0.06) benign(0.33) TCGA-06-5858-01 10 95995711 95995711 C T PLCE1 Nonsense_Mutation p.R752* 0.08 TCGA-06-5858-01 11 119206097 119206097 A G RNF26 Missense_Mutation p.S89G 0.73 tolerated(1) benign(0.003) TCGA-06-5858-01 11 120201174 120201174 C T TMEM136 Missense_Mutation p.R252W 0.37 tolerated(0.16) benign(0.001) TCGA-06-5858-01 11 126143242 126143242 C T FOXRED1 Silent p.A143A 0.62 TCGA-06-5858-01 11 130343095 130343095 G A ADAMTS15 Silent p.S744S 0.19 TCGA-06-5858-01 11 16036504 16036504 C T SOX6 Silent p.R572R 0.08 TCGA-06-5858-01 11 16847767 16847767 C T PLEKHA7 Missense_Mutation p.A415T 0.80 tolerated(0.43) benign(0.001) TCGA-06-5858-01 11 20959373 20959373 C T NELL1 Missense_Mutation p.R347W 0.68 tolerated(0.05) benign(0.046) TCGA-06-5858-01 11 3249728 3249728 G A MRGPRE Missense_Mutation p.T100M 0.74 tolerated(0.17) benign(0.024) TCGA-06-5858-01 11 46406690 46406690 C T CHRM4 Missense_Mutation p.R473Q 0.77 deleterious(0.04) benign(0.354) TCGA-06-5858-01 11 57137380 57137380 C A P2RX3 Silent p.I368I 0.97 TCGA-06-5858-01 11 64496457 64496457 C T RASGRP2 Missense_Mutation p.R550H 0.74 deleterious(0) possibly_damaging(0.903) TCGA-06-5858-01 11 71943788 71943788 C T INPPL1 Missense_Mutation p.R611C 0.62 deleterious(0) probably_damaging(1) TCGA-06-5858-01 11 72528883 72528883 C T ATG16L2 Missense_Mutation p.R101W 0.85 deleterious(0) possibly_damaging(0.79) TCGA-06-5858-01 12 104714974 104714974 C T TXNRD1 Silent p.D365D 0.74 TCGA-06-5858-01 12 121177273 121177273 G A ACADS 3'UTR 0.74 TCGA-06-5858-01 12 132397780 132397780 G A ULK1 Silent p.P378P 0.56 TCGA-06-5858-01 12 53585229 53585229 C T ITGB7 3'UTR 0.68 TCGA-06-5858-01 13 111088642 111088642 C T COL4A2 Silent p.N251N 0.79 TCGA-06-5858-01 13 111371669 111371669 C T ING1 Missense_Mutation p.A220V 0.08 deleterious(0.01) probably_damaging(0.914) TCGA-06-5858-01 13 111870210 111870210 G A ARHGEF7 Missense_Mutation p.R239H 0.76 deleterious(0) probably_damaging(0.995) TCGA-06-5858-01 13 20067042 20067042 G A TPTE2 Missense_Mutation p.P23S 0.53 tolerated_low_confidence(0.52) benign(0.003) TCGA-06-5858-01 13 25023906 25023906 C T PARP4 Missense_Mutation p.G1022R 0.73 deleterious(0) probably_damaging(0.996) TCGA-06-5858-01 13 33704214 33704214 G A STARD13 Silent p.S200S 0.52 TCGA-06-5858-01 13 48947629 48947629 G A RB1 Splice_Site p.X405_splice 0.73 TCGA-06-5858-01 13 95233375 95233375 A C TGDS Missense_Mutation p.C175W 0.57 tolerated(0.15) possibly_damaging(0.796) TCGA-06-5858-01 13 95673860 95673860 G A ABCC4 Missense_Mutation p.S1316L 0.77 deleterious_low_confidence(0.01) benign(0.047) TCGA-06-5858-01 14 103412980 103412980 C T CDC42BPB Silent p.S1191S 0.21 TCGA-06-5858-01 14 106311759 106311759 C T IGHD Missense_Mutation p.V85M 0.79 tolerated(0.12) benign(0.042) TCGA-06-5858-01 14 50267402 50267402 G A NEMF Missense_Mutation p.T703M 0.76 tolerated(0.06) benign(0.007) TCGA-06-5858-01 14 54418835 54418835 C T BMP4 Missense_Mutation p.A36T 0.49 tolerated(0.43) benign(0.004) TCGA-06-5858-01 14 65208866 65208866 G A PLEKHG3 Silent p.P821P 0.73 TCGA-06-5858-01 14 78390916 78390916 G A ADCK1 Silent p.A325A 0.18 TCGA-06-5858-01 14 93119291 93119291 C T RIN3 Missense_Mutation p.R633C 0.82 tolerated(0.23) probably_damaging(0.917) TCGA-06-5858-01 14 95058444 95058444 G A SERPINA5 Silent p.A363A 0.73 TCGA-06-5858-01 14 95922000 95922000 G A SYNE3 Missense_Mutation p.A284V 0.04 tolerated(0.61) benign(0) TCGA-06-5858-01 15 101567914 101567914 C T LRRK1 Silent p.D866D 0.67 TCGA-06-5858-01 15 42140687 42140687 G T SPTBN5 3'UTR 0.69 TCGA-06-5858-01 15 42151139 42151139 A G SPTBN5 Silent p.H2676H 0.79 TCGA-06-5858-01 15 74888087 74888087 C T ARID3B Missense_Mutation p.A552V 0.54 tolerated_low_confidence(0.12) possibly_damaging(0.542) TCGA-06-5858-01 15 75722661 75722661 C T SIN3A Missense_Mutation p.R19Q 0.62 tolerated_low_confidence(0.1) benign(0.005) TCGA-06-5858-01 15 78578420 78578420 C T WDR61 Missense_Mutation p.V238I 0.65 tolerated(0.11) benign(0.055) TCGA-06-5858-01 15 81295114 81295114 C T MESDC1 Missense_Mutation p.R168C 0.70 deleterious(0) possibly_damaging(0.736) TCGA-06-5858-01 15 85189474 85189474 G A WDR73 Missense_Mutation p.A153V 0.75 tolerated(0.38) benign(0.009) TCGA-06-5858-01 16 22926622 22926622 G A HS3ST2 Silent p.P281P 0.03 TCGA-06-5858-01 16 29756241 29756241 C T C16orf54 Missense_Mutation p.R11H 0.74 tolerated_low_confidence(1) benign(0) TCGA-06-5858-01 16 30616193 30616193 G A ZNF689 Missense_Mutation p.R299C 0.82 tolerated(0.08) probably_damaging(0.98) TCGA-06-5858-01 16 57449841 57449841 C T CCL17 3'UTR 0.69 TCGA-06-5858-01 16 57546730 57546730 G A CCDC102A Missense_Mutation p.R526C 0.76 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-5858-01 16 67578997 67578997 G A FAM65A Missense_Mutation p.R1023H 0.03 tolerated(0.06) possibly_damaging(0.522) TCGA-06-5858-01 16 784368 784368 C T NARFL Intron 0.74 TCGA-06-5858-01 16 81236192 81236192 G A PKD1L2 Silent p.S352S 0.05 TCGA-06-5858-01 16 87873310 87873310 C T SLC7A5 Missense_Mutation p.V313M 0.70 deleterious(0.02) possibly_damaging(0.647) TCGA-06-5858-01 17 16347362 16347362 C T FAM211A Missense_Mutation p.R192Q 0.67 deleterious(0.05) benign(0.32) TCGA-06-5858-01 17 1780602 1780602 C T RPA1 Silent p.D228D 0.73 TCGA-06-5858-01 17 26116655 26116655 G A NOS2 Missense_Mutation p.P57L 0.79 tolerated(0.21) benign(0.002) TCGA-06-5858-01 17 36704805 36704805 G A SRCIN1 Silent p.I1086I 0.71 TCGA-06-5858-01 17 41243940 41243940 C T BRCA1 Missense_Mutation p.R1203Q 0.70 tolerated(1) benign(0.001) TCGA-06-5858-01 17 4713214 4713214 C T PLD2 Silent p.L250L 0.04 TCGA-06-5858-01 17 48597088 48597088 C T MYCBPAP Missense_Mutation p.R329C 0.09 tolerated(0.08) benign(0.086) TCGA-06-5858-01 17 7097030 7097030 C T DLG4 Missense_Mutation p.R559Q 0.11 tolerated(1) benign(0.155) TCGA-06-5858-01 17 74395033 74395033 G A UBE2O Silent p.D556D 0.79 TCGA-06-5858-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.69 tolerated(0.11) benign(0.308) TCGA-06-5858-01 17 7752152 7752152 C T KDM6B Missense_Mutation p.P849L 0.75 benign(0.11) TCGA-06-5858-01 17 79094804 79094804 G A AATK Missense_Mutation p.R978W 0.38 deleterious(0.01) possibly_damaging(0.719) TCGA-06-5858-01 17 79556036 79556036 G A NPLOC4 Silent p.D405D 0.72 TCGA-06-5858-01 17 79826780 79826780 A C ARHGDIA Missense_Mutation p.L196R 0.79 deleterious(0) probably_damaging(1) TCGA-06-5858-01 18 13885086 13885086 C T MC2R Missense_Mutation p.M144I 0.09 tolerated(0.16) benign(0.002) TCGA-06-5858-01 18 21119357 21119357 C T NPC1 Missense_Mutation p.R958Q 0.41 deleterious(0.02) probably_damaging(0.995) TCGA-06-5858-01 18 21136387 21136387 T C NPC1 Silent p.S382S 0.35 TCGA-06-5858-01 18 28908192 28908192 G A DSG1 Missense_Mutation p.R86H 0.46 tolerated(0.1) probably_damaging(0.932) TCGA-06-5858-01 18 29447379 29447379 C T TRAPPC8 Missense_Mutation p.E817K 0.41 tolerated(0.34) benign(0.163) TCGA-06-5858-01 18 44036518 44036518 C T RNF165 Silent p.C320C 0.13 TCGA-06-5858-01 18 48252336 48252336 C T MAPK4 Silent p.I286I 0.40 TCGA-06-5858-01 18 71749237 71749238 - T FBXO15 Frame_Shift_Ins p.N396Kfs*2 0.28 TCGA-06-5858-01 18 74680298 74680298 C T ZNF236 3'UTR 0.31 TCGA-06-5858-01 18 77624216 77624216 C T KCNG2 Silent p.S183S 0.04 TCGA-06-5858-01 19 10886407 10886407 G A DNM2 Silent p.P138P 0.14 TCGA-06-5858-01 19 11018751 11018751 G A CARM1 Missense_Mutation p.R128Q 0.75 tolerated(0.15) benign(0.041) TCGA-06-5858-01 19 11834096 11834096 C A ZNF823 Missense_Mutation p.D85Y 0.05 deleterious(0) possibly_damaging(0.804) TCGA-06-5858-01 19 12975736 12975736 G A MAST1 Missense_Mutation p.V494M 0.80 deleterious(0.01) probably_damaging(1) TCGA-06-5858-01 19 13216154 13216154 C T TRMT1 Missense_Mutation p.R587Q 0.11 deleterious(0.04) benign(0.109) TCGA-06-5858-01 19 14150709 14150709 C T IL27RA Missense_Mutation p.A174V 0.66 tolerated(0.29) benign(0.001) TCGA-06-5858-01 19 17597950 17597950 C T SLC27A1 Intron 0.82 TCGA-06-5858-01 19 17612106 17612106 C T SLC27A1 Missense_Mutation p.A554V 0.11 deleterious(0.04) possibly_damaging(0.632) TCGA-06-5858-01 19 19356151 19356151 G A NCAN Silent p.P1174P 0.79 TCGA-06-5858-01 19 36340484 36340484 G A NPHS1 Missense_Mutation p.P227L 0.69 deleterious(0) probably_damaging(0.993) TCGA-06-5858-01 19 38590640 38590640 G A SIPA1L3 Silent p.T568T 0.67 TCGA-06-5858-01 19 40382725 40382725 C T FCGBP Silent p.S3387S 0.39 TCGA-06-5858-01 19 41009787 41009787 C T SPTBN4 Silent p.H471H 0.76 TCGA-06-5858-01 19 42398544 42398544 G A ARHGEF1 Silent p.S270S 0.52 TCGA-06-5858-01 19 42703643 42703643 G A DEDD2 Missense_Mutation p.R310C 0.07 deleterious(0.01) benign(0.217) TCGA-06-5858-01 19 43259226 43259226 G A PSG8 Missense_Mutation p.T301M 0.66 deleterious(0) benign(0.432) TCGA-06-5858-01 19 46137650 46137650 C T EML2 Missense_Mutation p.V288I 0.68 deleterious(0.02) possibly_damaging(0.677) TCGA-06-5858-01 19 46345702 46345702 C T SYMPK Missense_Mutation p.R298H 0.73 deleterious(0) probably_damaging(0.999) TCGA-06-5858-01 19 46351088 46351088 C T SYMPK Missense_Mutation p.D200N 0.55 deleterious(0.04) possibly_damaging(0.613) TCGA-06-5858-01 19 48945047 48945047 C T GRIN2D Silent p.Y758Y 0.28 TCGA-06-5858-01 19 50243103 50243103 G A TSKS Missense_Mutation p.T570M 0.74 deleterious_low_confidence(0.04) benign(0.103) TCGA-06-5858-01 19 52249297 52249297 G A FPR1 Silent p.P317P 0.79 TCGA-06-5858-01 19 6222504 6222504 C T MLLT1 Silent p.P246P 0.75 TCGA-06-5858-01 19 813085 813085 C T LPPR3 Missense_Mutation p.A576T 0.93 tolerated(0.61) benign(0.074) TCGA-06-5858-01 19 9008202 9008202 G A MUC16 Missense_Mutation p.T13117I 0.70 possibly_damaging(0.889) TCGA-06-5858-01 1 111730833 111730833 C T DENND2D Missense_Mutation p.R420Q 0.05 tolerated(0.15) possibly_damaging(0.509) TCGA-06-5858-01 1 113269393 113269393 C T FAM19A3 3'UTR 0.93 TCGA-06-5858-01 1 116226676 116226676 G A VANGL1 Missense_Mutation p.R353Q 0.71 deleterious(0) probably_damaging(0.953) TCGA-06-5858-01 1 146766154 146766154 G A CHD1L Missense_Mutation p.R857Q 0.05 deleterious(0) probably_damaging(0.995) TCGA-06-5858-01 1 156823811 156823811 G A INSRR Missense_Mutation p.R124C 0.71 deleterious(0) probably_damaging(0.991) TCGA-06-5858-01 1 15870908 15870908 G A DNAJC16 Missense_Mutation p.V197M 0.76 deleterious(0) probably_damaging(0.997) TCGA-06-5858-01 1 160535290 160535290 C T CD84 Missense_Mutation p.D98N 0.07 tolerated(1) benign(0.001) TCGA-06-5858-01 1 169347745 169347745 C T BLZF1 Nonsense_Mutation p.R216* 0.76 TCGA-06-5858-01 1 205498765 205498765 C T CDK18 Intron 0.80 TCGA-06-5858-01 1 214837072 214837072 C T CENPF Nonsense_Mutation p.R3094* 0.77 TCGA-06-5858-01 1 231401503 231401503 C T GNPAT Missense_Mutation p.R248C 0.75 deleterious(0) probably_damaging(0.982) TCGA-06-5858-01 1 237729890 237729890 G A RYR2 Missense_Mutation p.G1080S 0.06 benign(0) TCGA-06-5858-01 1 27268025 27268025 C T NUDC Silent p.A79A 0.78 TCGA-06-5858-01 1 3328828 3328828 C T PRDM16 Silent p.A689A 0.79 TCGA-06-5858-01 1 51829678 51829678 C T EPS15 Missense_Mutation p.R740H 0.64 tolerated(0.07) benign(0.019) TCGA-06-5858-01 1 53164010 53164010 G T COA7 5'UTR 0.59 TCGA-06-5858-01 1 6314021 6314021 G A GPR153 Silent p.G181G 0.16 TCGA-06-5858-01 1 887446 887446 G A NOC2L Missense_Mutation p.A422V 0.68 tolerated(1) benign(0.002) TCGA-06-5858-01 20 47249039 47249039 G A PREX1 Missense_Mutation p.T1469M 0.05 deleterious(0.02) probably_damaging(0.932) TCGA-06-5858-01 20 62126254 62126254 G A EEF1A2 Silent p.S175S 0.76 TCGA-06-5858-01 21 28338467 28338467 A C ADAMTS5 Missense_Mutation p.S82A 0.74 tolerated(0.51) benign(0.004) TCGA-06-5858-01 21 44324045 44324045 C T NDUFV3 Missense_Mutation p.A308V 0.67 tolerated(1) benign(0.024) TCGA-06-5858-01 21 45732042 45732042 C T PFKL Missense_Mutation p.R98C 0.58 deleterious(0) probably_damaging(0.998) TCGA-06-5858-01 22 18301786 18301786 G A MICAL3 Missense_Mutation p.S1214L 0.57 benign(0.006) TCGA-06-5858-01 22 19119833 19119833 C T TSSK2 Silent p.P307P 0.66 TCGA-06-5858-01 22 19398254 19398254 C T HIRA Missense_Mutation p.A29T 0.04 deleterious(0) probably_damaging(0.996) TCGA-06-5858-01 22 35802697 35802697 C T MCM5 Missense_Mutation p.A192V 0.05 tolerated(0.41) benign(0.003) TCGA-06-5858-01 22 37328885 37328885 G A CSF2RB Missense_Mutation p.R364Q 0.60 tolerated(0.29) benign(0.001) TCGA-06-5858-01 22 49042484 49042484 G A FAM19A5 Missense_Mutation p.R63Q 0.07 tolerated(0.15) probably_damaging(0.937) TCGA-06-5858-01 22 50596540 50596540 G A MOV10L1 Missense_Mutation p.V1041I 0.80 tolerated(0.07) possibly_damaging(0.615) TCGA-06-5858-01 22 50957116 50957116 G A NCAPH2 Missense_Mutation p.V229M 0.77 tolerated(0.3) benign(0.016) TCGA-06-5858-01 22 51237141 51237141 C T RPL23AP82 RNA 0.31 TCGA-06-5858-01 2 101656773 101656773 G A TBC1D8 Missense_Mutation p.A301V 0.18 tolerated(0.06) benign(0.014) TCGA-06-5858-01 2 12864875 12864875 T A TRIB2 Intron 0.07 TCGA-06-5858-01 2 160074082 160074082 C T TANC1 Missense_Mutation p.R1107W 0.08 tolerated(0.08) probably_damaging(0.946) TCGA-06-5858-01 2 179396884 179396884 C T TTN Missense_Mutation p.E34820K 0.71 TCGA-06-5858-01 2 201337625 201337625 C T SPATS2L Silent p.H377H 0.09 TCGA-06-5858-01 2 230020577 230020577 G A PID1 Missense_Mutation p.T76M 0.15 deleterious(0.02) benign(0.42) TCGA-06-5858-01 2 234580843 234580843 G A UGT1A9 Missense_Mutation p.R88Q 0.70 tolerated(0.58) benign(0.046) TCGA-06-5858-01 2 241728662 241728662 C T KIF1A Silent p.S58S 0.68 TCGA-06-5858-01 2 31167749 31167749 G A GALNT14 Missense_Mutation p.R273C 0.04 deleterious(0) probably_damaging(0.928) TCGA-06-5858-01 2 33952423 33952423 C T AC009499.1 Intron 0.56 TCGA-06-5858-01 2 69034467 69034467 G A ARHGAP25 Missense_Mutation p.V177M 0.06 deleterious(0) probably_damaging(0.987) TCGA-06-5858-01 2 85836146 85836146 C T C2orf68 Silent p.T141T 0.68 TCGA-06-5858-01 2 9517083 9517083 G A ASAP2 Missense_Mutation p.R598Q 0.67 tolerated(0.46) benign(0.167) TCGA-06-5858-01 3 124017688 124017688 G A KALRN Silent p.T338T 0.56 TCGA-06-5858-01 3 126153184 126153184 G A CCDC37 Missense_Mutation p.E530K 0.74 tolerated(0.05) probably_damaging(0.943) TCGA-06-5858-01 3 129195512 129195512 G A IFT122 Missense_Mutation p.G390S 0.61 deleterious(0.02) probably_damaging(1) TCGA-06-5858-01 3 134226076 134226076 G A CEP63 Missense_Mutation p.R57H 0.21 deleterious(0) probably_damaging(0.997) TCGA-06-5858-01 3 184298249 184298249 C T EPHB3 Silent p.A744A 0.04 TCGA-06-5858-01 3 185245282 185245282 G A LIPH Silent p.S206S 0.74 TCGA-06-5858-01 3 187442788 187442788 G A BCL6 Missense_Mutation p.R640W 0.72 deleterious(0) probably_damaging(0.999) TCGA-06-5858-01 3 189582118 189582118 G A TP63 Missense_Mutation p.R226H 0.72 deleterious(0) probably_damaging(0.999) TCGA-06-5858-01 3 3139680 3139680 C T IL5RA Missense_Mutation p.A195T 0.73 deleterious(0.03) probably_damaging(0.934) TCGA-06-5858-01 3 38620857 38620857 T C SCN5A Missense_Mutation p.K1120E 0.64 tolerated(0.66) benign(0.001) TCGA-06-5858-01 3 39152446 39152446 C T TTC21A Missense_Mutation p.R125C 0.75 deleterious(0.02) benign(0.008) TCGA-06-5858-01 3 47040042 47040042 C T NBEAL2 Missense_Mutation p.R1070C 0.57 deleterious(0) probably_damaging(0.932) TCGA-06-5858-01 3 48719898 48719898 G C NCKIPSD Missense_Mutation p.D123E 0.03 tolerated(0.16) probably_damaging(0.984) TCGA-06-5858-01 3 69097037 69097037 C T TMF1 Silent p.A273A 0.74 TCGA-06-5858-01 3 99568062 99568062 G A FILIP1L Missense_Mutation p.R820C 0.46 deleterious(0.02) benign(0.035) TCGA-06-5858-01 4 159567947 159567947 C T RXFP1 Silent p.A450A 0.20 TCGA-06-5858-01 4 177143569 177143569 A G ASB5 Silent p.G93G 0.13 TCGA-06-5858-01 4 188924752 188924752 C T ZFP42 Missense_Mutation p.T264M 0.76 deleterious(0) probably_damaging(0.999) TCGA-06-5858-01 4 2877779 2877779 G A ADD1 Missense_Mutation p.R46H 0.69 deleterious(0) probably_damaging(0.999) TCGA-06-5858-01 5 107684192 107684192 C T FBXL17 Missense_Mutation p.G472S 0.70 tolerated(0.49) benign(0.391) TCGA-06-5858-01 5 133541549 133541549 A G PPP2CA Intron 0.67 TCGA-06-5858-01 5 140180853 140180853 C T PCDHA3 Missense_Mutation p.S24L 0.77 deleterious_low_confidence(0.01) benign(0.001) TCGA-06-5858-01 5 140188279 140188279 G A PCDHA4 Missense_Mutation p.A503T 0.75 tolerated_low_confidence(0.11) benign(0.055) TCGA-06-5858-01 5 140476058 140476058 T A PCDHB2 Missense_Mutation p.F562I 0.50 deleterious(0.01) benign(0.21) TCGA-06-5858-01 5 140595483 140595483 G A PCDHB13 Silent p.S596S 0.43 TCGA-06-5858-01 5 140712338 140712338 C T PCDHGA1 Missense_Mutation p.A696V 0.09 deleterious_low_confidence(0) possibly_damaging(0.901) TCGA-06-5858-01 5 140789386 140789386 G A PCDHGB6 Silent p.S539S 0.88 TCGA-06-5858-01 5 140802272 140802272 C T PCDHGA11 Missense_Mutation p.T493M 0.75 tolerated_low_confidence(0.05) benign(0.088) TCGA-06-5858-01 5 149497261 149497261 G A PDGFRB Silent p.N1019N 0.06 TCGA-06-5858-01 5 170883601 170883601 C T FGF18 Missense_Mutation p.T139M 0.73 deleterious(0) probably_damaging(0.994) TCGA-06-5858-01 5 176078841 176078841 G A TSPAN17 Silent p.S75S 0.75 TCGA-06-5858-01 5 66416869 66416869 C T MAST4 Nonsense_Mutation p.R562* 0.75 TCGA-06-5858-01 5 76709099 76709099 G A PDE8B Missense_Mutation p.A626T 0.73 deleterious(0) probably_damaging(0.977) TCGA-06-5858-01 6 13588650 13588650 C T SIRT5 Missense_Mutation p.P68L 0.66 deleterious(0.03) probably_damaging(0.915) TCGA-06-5858-01 6 149699411 149699411 A G TAB2 Silent p.E120E 0.74 TCGA-06-5858-01 6 168348980 168348980 C T MLLT4 Missense_Mutation p.T1211M 0.62 tolerated_low_confidence(0.09) benign(0.374) TCGA-06-5858-01 6 2770518 2770518 C T WRNIP1 Silent p.I393I 0.62 TCGA-06-5858-01 6 28554340 28554340 C T SCAND3 Missense_Mutation p.R52H 0.73 tolerated_low_confidence(0.08) possibly_damaging(0.846) TCGA-06-5858-01 6 31637206 31637206 G A CSNK2B-LY6G5B-1181 Missense_Mutation p.G160S 0.08 deleterious(0) probably_damaging(1) TCGA-06-5858-01 6 32008215 32008215 C T CYP21A2 Silent p.H324H 0.73 TCGA-06-5858-01 6 41773646 41773646 C T USP49 Missense_Mutation p.R359H 0.65 tolerated(1) benign(0) TCGA-06-5858-01 6 46836637 46836637 G A GPR116 Missense_Mutation p.S535L 0.78 deleterious(0.01) possibly_damaging(0.48) TCGA-06-5858-01 6 46836810 46836810 C T GPR116 Silent p.P477P 0.70 TCGA-06-5858-01 6 8422856 8422856 T C SLC35B3 Missense_Mutation p.I141V 0.15 tolerated(0.19) benign(0.326) TCGA-06-5858-01 7 100350423 100350423 C T ZAN Missense_Mutation p.L899F 0.39 unknown(0) TCGA-06-5858-01 7 103162532 103162532 G A RELN Silent p.N2535N 0.39 TCGA-06-5858-01 7 117375046 117375046 C T CTTNBP2 Missense_Mutation p.R1266H 0.41 deleterious(0) possibly_damaging(0.709) TCGA-06-5858-01 7 121773679 121773679 G A AASS Silent p.N34N 0.38 TCGA-06-5858-01 7 129357145 129357145 G A NRF1 Silent p.S384S 0.40 TCGA-06-5858-01 7 130021608 130021608 G A CPA1 Silent p.S95S 0.39 TCGA-06-5858-01 7 139259877 139259877 G C HIPK2 Missense_Mutation p.S1041R 0.19 deleterious(0) possibly_damaging(0.791) TCGA-06-5858-01 7 1484591 1484591 C T MICALL2 Missense_Mutation p.R372H 0.29 tolerated(0.57) benign(0.003) TCGA-06-5858-01 7 150771186 150771186 G A SLC4A2 Missense_Mutation p.G866S 0.43 tolerated(0.98) benign(0.013) TCGA-06-5858-01 7 154863298 154863298 G A HTR5A Missense_Mutation p.R230H 0.40 deleterious(0.03) possibly_damaging(0.458) TCGA-06-5858-01 7 157370776 157370776 G A PTPRN2 Silent p.N851N 0.05 TCGA-06-5858-01 7 158896531 158896531 T C VIPR2 Missense_Mutation p.N92D 0.27 deleterious(0.01) probably_damaging(0.97) TCGA-06-5858-01 7 4091337 4091337 G A SDK1 Missense_Mutation p.G929E 0.07 deleterious(0.04) benign(0.058) TCGA-06-5858-01 7 42974713 42974713 C T MRPL32 Missense_Mutation p.P97L 0.06 deleterious(0) probably_damaging(0.935) TCGA-06-5858-01 7 47342939 47342939 G A TNS3 Silent p.F1022F 0.38 TCGA-06-5858-01 7 4900644 4900644 C T PAPOLB Silent p.A265A 0.42 TCGA-06-5858-01 7 53104043 53104043 G T POM121L12 Missense_Mutation p.A227S 0.45 deleterious(0.05) possibly_damaging(0.866) TCGA-06-5858-01 7 5540355 5540355 G A FBXL18 Silent p.R515R 0.44 TCGA-06-5858-01 7 64168851 64168851 A G ZNF107 Silent p.E723E 0.38 TCGA-06-5858-01 7 71252795 71252795 C T CALN1 Missense_Mutation p.A251T 0.12 deleterious(0) probably_damaging(0.993) TCGA-06-5858-01 7 72742399 72742399 G A FKBP6 5'UTR 0.41 TCGA-06-5858-01 7 75511205 75511205 C T RHBDD2 Silent p.G79G 0.45 TCGA-06-5858-01 8 144732159 144732159 G A ZNF623 Silent p.T39T 0.73 TCGA-06-5858-01 8 67492431 67492431 G A MYBL1 Silent p.N346N 0.88 TCGA-06-5858-01 8 95521969 95521969 G A KIAA1429 Missense_Mutation p.R1276C 0.70 deleterious(0.02) benign(0.44) TCGA-06-5858-01 9 100126341 100126341 C T CCDC180 Missense_Mutation p.P1348L 0.65 tolerated(0.11) benign(0) TCGA-06-5858-01 9 113228166 113228166 C T SVEP1 Missense_Mutation p.V1101M 0.87 possibly_damaging(0.532) TCGA-06-5858-01 9 116994128 116994128 C T COL27A1 Silent p.P849P 0.73 TCGA-06-5858-01 9 124528842 124528842 G A DAB2IP Silent p.P482P 0.78 TCGA-06-5858-01 9 125617558 125617558 G A RC3H2 Missense_Mutation p.A907V 0.81 deleterious(0.01) probably_damaging(0.972) TCGA-06-5858-01 9 125922701 125922701 C T STRBP Missense_Mutation p.R223H 0.71 deleterious(0) probably_damaging(1) TCGA-06-5858-01 9 130494196 130494196 G A TOR2A 3'UTR 0.76 TCGA-06-5858-01 9 135073844 135073844 G A NTNG2 Silent p.T235T 0.72 TCGA-06-5858-01 9 139350207 139350207 C T SEC16A Silent p.P1901P 0.40 TCGA-06-5858-01 9 140128881 140128881 G A SLC34A3 Silent p.P369P 0.74 TCGA-06-5858-01 9 140356687 140356687 G A PNPLA7 Missense_Mutation p.R1197C 0.72 deleterious(0) probably_damaging(0.972) TCGA-06-5858-01 9 140361890 140361890 G A PNPLA7 Missense_Mutation p.A973V 0.67 tolerated(0.31) benign(0.005) TCGA-06-5858-01 9 19423911 19423911 C T ACER2 Missense_Mutation p.R54C 0.73 deleterious(0.03) probably_damaging(0.946) TCGA-06-5858-01 9 36169599 36169599 G A CCIN Missense_Mutation p.V34M 0.05 deleterious(0) probably_damaging(1) TCGA-06-5858-01 9 5988438 5988438 C T KIAA2026 Missense_Mutation p.R234Q 0.80 deleterious(0) probably_damaging(0.989) TCGA-06-5858-01 X 135279204 135279204 A G FHL1 Intron 0.73 TCGA-06-5858-01 X 153580717 153580717 G A FLNA Missense_Mutation p.R2201C 0.17 deleterious(0) possibly_damaging(0.908) TCGA-06-5858-01 X 153587696 153587696 G A FLNA Silent p.D1407D 0.78 TCGA-06-5858-01 X 2408513 2408513 G A ZBED1 Missense_Mutation p.T83M 0.15 deleterious(0) probably_damaging(0.97) TCGA-06-5858-01 X 35993898 35993898 C T CXorf22 Nonsense_Mutation p.R861* 0.72 TCGA-06-5858-01 X 50659329 50659329 C T BMP15 Missense_Mutation p.R301C 0.68 tolerated(0.09) probably_damaging(0.953) TCGA-06-5858-01 X 6995419 6995419 C T HDHD1 Missense_Mutation p.A141T 0.64 tolerated(0.42) benign(0.016) TCGA-06-5858-01 X 76814187 76814187 G A ATRX Missense_Mutation p.R2153C 0.67 probably_damaging(1) TCGA-06-5858-01 X 99662086 99662086 T C PCDH19 Missense_Mutation p.T504A 0.16 deleterious(0.01) probably_damaging(0.939) TCGA-06-5859-01 11 73914828 73914828 A T PPME1 Missense_Mutation p.M53L 0.28 tolerated(0.65) benign(0.013) TCGA-06-5859-01 12 40040162 40040162 G C C12orf40 Missense_Mutation p.M78I 0.37 deleterious(0.03) probably_damaging(0.997) TCGA-06-5859-01 12 93164025 93164028 TTCA - PLEKHG7 3'UTR 0.21 TCGA-06-5859-01 12 9885637 9885637 A - CLECL1 Frame_Shift_Del p.L75* 0.20 TCGA-06-5859-01 15 72972390 72972390 G A HIGD2B 5'UTR 0.36 TCGA-06-5859-01 15 90168464 90168464 C T TICRR Silent p.T1641T 0.38 TCGA-06-5859-01 16 30721206 30721206 G A SRCAP Silent p.E297E 0.47 TCGA-06-5859-01 16 4945705 4945705 C T PPL Missense_Mutation p.V329M 0.31 tolerated(0.22) benign(0.002) TCGA-06-5859-01 16 816982 816982 G A MSLN Missense_Mutation p.E499K 0.54 tolerated(0.12) benign(0.022) TCGA-06-5859-01 17 76533428 76533428 C T DNAH17 Missense_Mutation p.V938I 0.41 benign(0.005) TCGA-06-5859-01 19 19656436 19656436 C T CILP2 Missense_Mutation p.R1028W 0.52 deleterious(0) possibly_damaging(0.582) TCGA-06-5859-01 19 22941588 22941588 C T ZNF99 Missense_Mutation p.G375S 0.29 deleterious(0.03) benign(0.223) TCGA-06-5859-01 19 39104548 39104548 G A MAP4K1 Missense_Mutation p.R169C 0.23 deleterious(0) probably_damaging(0.939) TCGA-06-5859-01 19 39219650 39219650 C T ACTN4 Silent p.F811F 0.34 TCGA-06-5859-01 19 39691346 39691346 C T NCCRP1 Missense_Mutation p.R260W 0.37 tolerated(0.18) benign(0.018) TCGA-06-5859-01 19 40396029 40396029 C T FCGBP Silent p.S2456S 0.19 TCGA-06-5859-01 19 42730234 42730234 C T ZNF526 Missense_Mutation p.P560L 0.38 tolerated(0.5) possibly_damaging(0.84) TCGA-06-5859-01 1 184764446 184764446 C T FAM129A Missense_Mutation p.E818K 0.40 tolerated_low_confidence(0.69) benign(0.002) TCGA-06-5859-01 1 201052298 201052298 C T CACNA1S Missense_Mutation p.R462H 0.40 tolerated(0.78) benign(0.001) TCGA-06-5859-01 1 202862387 202862387 C - KLHL12 Frame_Shift_Del p.R521Dfs*14 0.32 TCGA-06-5859-01 1 22902985 22902985 C T EPHA8 Silent p.I145I 0.12 TCGA-06-5859-01 20 33364240 33364240 G T NCOA6 Missense_Mutation p.L83I 0.35 probably_damaging(0.994) TCGA-06-5859-01 20 55908298 55908298 C G SPO11 Missense_Mutation p.I100M 0.37 deleterious(0) possibly_damaging(0.474) TCGA-06-5859-01 20 60831247 60831247 G A OSBPL2 Missense_Mutation p.G3R 0.35 deleterious_low_confidence(0.04) benign(0.361) TCGA-06-5859-01 22 25150829 25150829 G A PIWIL3 Missense_Mutation p.T232I 0.37 tolerated(1) benign(0.002) TCGA-06-5859-01 22 46655574 46655574 C T PKDREJ Missense_Mutation p.G1216R 0.33 deleterious(0.02) benign(0.074) TCGA-06-5859-01 2 223423423 223423423 C T SGPP2 Missense_Mutation p.L336F 0.36 tolerated(0.11) benign(0.049) TCGA-06-5859-01 2 56599613 56599613 G A CCDC85A Silent p.P484P 0.42 TCGA-06-5859-01 2 60688423 60688423 C T BCL11A Missense_Mutation p.A542T 0.30 tolerated(0.52) possibly_damaging(0.499) TCGA-06-5859-01 3 183226008 183226008 G A KLHL6 Nonsense_Mutation p.R250* 0.45 TCGA-06-5859-01 3 50386328 50386328 G A NPRL2 Nonsense_Mutation p.Q188* 0.04 TCGA-06-5859-01 3 50387415 50387416 TG - NPRL2 Frame_Shift_Del p.T39Sfs*51 0.37 TCGA-06-5859-01 3 9594193 9594193 G T LHFPL4 Silent p.G57G 0.61 TCGA-06-5859-01 4 189068102 189068102 C T TRIML1 Missense_Mutation p.A328V 0.56 tolerated(0.18) probably_damaging(0.999) TCGA-06-5859-01 4 39865056 39865056 C T PDS5A Missense_Mutation p.R889Q 0.27 deleterious(0) probably_damaging(1) TCGA-06-5859-01 5 129015540 129015540 G A ADAMTS19 Missense_Mutation p.V858I 0.28 tolerated(0.08) possibly_damaging(0.881) TCGA-06-5859-01 5 13762882 13762882 C T DNAH5 Silent p.T3410T 0.42 TCGA-06-5859-01 5 149213065 149213065 C A PPARGC1B Silent p.R477R 0.28 TCGA-06-5859-01 5 68805301 68805301 C T OCLN Silent p.Y128Y 0.45 TCGA-06-5859-01 7 129104580 129104580 G A STRIP2 Splice_Site p.X592_splice 0.28 TCGA-06-5859-01 7 143140562 143140562 T C TAS2R60 Missense_Mutation p.M6T 0.24 tolerated(0.53) benign(0.002) TCGA-06-5859-01 7 143956518 143956518 G A OR2A7 Silent p.V68V 0.12 TCGA-06-5859-01 7 149509076 149509076 C T SSPO RNA 0.22 TCGA-06-5859-01 7 2983971 2983971 G A CARD11 Missense_Mutation p.R187W 0.28 tolerated(0.21) probably_damaging(1) TCGA-06-5859-01 7 35712865 35712865 C T HERPUD2 Silent p.V57V 0.27 TCGA-06-5859-01 8 145108275 145108275 G A OPLAH Missense_Mutation p.A903V 0.34 tolerated(0.16) possibly_damaging(0.815) TCGA-06-5859-01 8 25181427 25181427 C A DOCK5 Missense_Mutation p.T560N 0.35 deleterious(0) probably_damaging(0.946) TCGA-06-5859-01 8 30700338 30700338 C T TEX15 Missense_Mutation p.V2066I 0.34 tolerated(0.05) benign(0.236) TCGA-06-5859-01 8 52733200 52733200 T A PCMTD1 Missense_Mutation p.E262V 0.04 deleterious(0.01) benign(0.072) TCGA-06-5859-01 8 54897020 54897020 C T TCEA1 Missense_Mutation p.R194K 0.50 deleterious(0.04) possibly_damaging(0.781) TCGA-06-5859-01 9 133750310 133750310 G T ABL1 Missense_Mutation p.D400Y 0.40 deleterious(0) probably_damaging(1) TCGA-06-5859-01 9 139091685 139091685 G A LHX3 Missense_Mutation p.P103L 0.52 tolerated(0.05) benign(0.329) TCGA-06-5859-01 9 82333807 82333807 C T TLE4 Missense_Mutation p.T504M 0.37 deleterious(0) probably_damaging(1) TCGA-06-5859-01 X 153130626 153130626 G A L1CAM Missense_Mutation p.S930L 0.74 deleterious(0) probably_damaging(0.964) TCGA-06-5859-01 X 153461511 153461511 T C OPN1MW Missense_Mutation p.S359P 0.56 deleterious(0) unknown(0) TCGA-06-5859-01 X 1584486 1584486 G A P2RY8 Silent p.R322R 0.42 TCGA-06-5859-01 X 34149408 34149408 G T FAM47A Missense_Mutation p.P330T 0.90 tolerated(0.08) probably_damaging(0.991) TCGA-06-6388-01 10 105928529 105928529 C T WDR96 Silent p.S888S 0.70 TCGA-06-6388-01 10 115804336 115804336 C T ADRB1 Silent p.L149L 0.53 TCGA-06-6388-01 11 64695622 64695622 G T PPP2R5B Missense_Mutation p.V195F 0.36 deleterious(0) probably_damaging(0.914) TCGA-06-6388-01 11 65617743 65617744 - T SNX32 Splice_Site p.X125_splice 0.22 TCGA-06-6388-01 11 67222962 67222962 C T CABP4 Missense_Mutation p.A23V 0.29 tolerated(0.52) benign(0.002) TCGA-06-6388-01 11 94554698 94554698 G A AMOTL1 Missense_Mutation p.R375H 0.39 tolerated(0.06) possibly_damaging(0.891) TCGA-06-6388-01 12 68619233 68619233 C G IL26 Missense_Mutation p.K73N 0.23 tolerated(0.23) benign(0.037) TCGA-06-6388-01 12 85277492 85277492 T C SLC6A15 Intron 0.34 TCGA-06-6388-01 13 50140816 50140816 C T RCBTB1 Missense_Mutation p.C72Y 0.31 deleterious(0.01) probably_damaging(0.918) TCGA-06-6388-01 13 95715080 95715080 T C ABCC4 Missense_Mutation p.S1082G 0.34 deleterious(0) benign(0.153) TCGA-06-6388-01 14 106320472 106320472 G A IGHM Silent p.S446S 0.29 TCGA-06-6388-01 14 47120942 47120942 C T RPL10L 5'UTR 0.26 TCGA-06-6388-01 15 33873724 33873724 G T RYR3 Missense_Mutation p.V485F 0.06 possibly_damaging(0.732) TCGA-06-6388-01 15 59181723 59181723 G C SLTM Missense_Mutation p.R704G 0.33 deleterious(0) unknown(0) TCGA-06-6388-01 15 75499831 75499831 G A C15orf39 Missense_Mutation p.R481Q 0.06 tolerated(1) benign(0) TCGA-06-6388-01 16 27374339 27374339 C T IL4R Nonsense_Mutation p.R556* 0.31 TCGA-06-6388-01 16 55361572 55361572 C T IRX6 Missense_Mutation p.A163V 0.48 deleterious(0) probably_damaging(0.978) TCGA-06-6388-01 17 70118954 70118954 C T SOX9 Missense_Mutation p.P176S 0.34 deleterious(0.01) benign(0.021) TCGA-06-6388-01 17 72943010 72943010 G A OTOP3 Missense_Mutation p.V354I 0.35 tolerated(0.27) benign(0.062) TCGA-06-6388-01 17 78444562 78444562 G A NPTX1 3'UTR 0.50 TCGA-06-6388-01 18 5395093 5395093 C A EPB41L3 Silent p.T1042T 0.32 TCGA-06-6388-01 18 71791770 71791770 G C FBXO15 Missense_Mutation p.H317D 0.54 deleterious(0) probably_damaging(0.999) TCGA-06-6388-01 19 11796063 11796063 G A ZNF833P RNA 0.32 TCGA-06-6388-01 19 42342222 42342222 C T LYPD4 Missense_Mutation p.V109I 0.21 tolerated(0.15) benign(0.055) TCGA-06-6388-01 19 43576027 43576027 C T PSG2 Silent p.A263A 0.26 TCGA-06-6388-01 19 43708378 43708378 C T PSG4 Silent p.P30P 0.30 TCGA-06-6388-01 19 56370207 56370207 T A NLRP4 Nonsense_Mutation p.L483* 0.17 TCGA-06-6388-01 19 5867028 5867028 G A FUT5 Missense_Mutation p.R237C 0.33 deleterious(0) possibly_damaging(0.66) TCGA-06-6388-01 1 100602642 100602643 - T TRMT13 Splice_Site p.X87_splice 0.33 TCGA-06-6388-01 1 112524445 112524445 G A KCND3 Missense_Mutation p.R302C 0.38 deleterious(0) possibly_damaging(0.898) TCGA-06-6388-01 1 12172031 12172031 C T TNFRSF8 Silent p.D251D 0.29 TCGA-06-6388-01 1 152283656 152283656 G A FLG Missense_Mutation p.R1236C 0.38 possibly_damaging(0.898) TCGA-06-6388-01 1 152328935 152328935 C T FLG2 Missense_Mutation p.E443K 0.39 unknown(0) TCGA-06-6388-01 1 160121742 160121743 - G ATP1A4 5'UTR 0.41 TCGA-06-6388-01 1 237806746 237806746 A T RYR2 Missense_Mutation p.K2447N 0.43 probably_damaging(0.981) TCGA-06-6388-01 1 40131873 40131873 G A NT5C1A Silent p.S57S 0.39 TCGA-06-6388-01 1 76272802 76272802 T C MSH4 Silent p.F188F 0.32 TCGA-06-6388-01 20 10644609 10644612 ACGA - JAG1 Splice_Site p.X146_splice 0.30 TCGA-06-6388-01 20 20493785 20493785 G A RALGAPA2 Missense_Mutation p.H1410Y 0.20 tolerated(1) benign(0.001) TCGA-06-6388-01 20 33584258 33584258 A G MYH7B Missense_Mutation p.Q1060R 0.08 benign(0.058) TCGA-06-6388-01 20 62737704 62737704 G A NPBWR2 Missense_Mutation p.R161W 0.28 tolerated(0.06) benign(0.028) TCGA-06-6388-01 22 23029667 23029667 C T IGLV3-25 Missense_Mutation p.T90M 0.38 deleterious(0) probably_damaging(0.98) TCGA-06-6388-01 2 107040566 107040566 T A RGPD3 Missense_Mutation p.D1286V 0.04 deleterious(0) benign(0.112) TCGA-06-6388-01 2 17692095 17692095 G A RAD51AP2 Silent p.Y1152Y 0.40 TCGA-06-6388-01 2 62728426 62728426 C T TMEM17 Missense_Mutation p.R172H 0.31 tolerated(0.37) benign(0.003) TCGA-06-6388-01 2 70683568 70683568 C T TGFA Missense_Mutation p.V90M 0.38 deleterious(0) probably_damaging(0.999) TCGA-06-6388-01 3 154832945 154832945 G A MME Splice_Site p.X120_splice 0.42 TCGA-06-6388-01 3 171330189 171330189 C G PLD1 Missense_Mutation p.G921A 0.41 tolerated(0.16) probably_damaging(0.993) TCGA-06-6388-01 4 148591889 148591889 G A PRMT10 Missense_Mutation p.S250F 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-6388-01 4 62452954 62452954 G A LPHN3 Missense_Mutation p.R22H 0.32 deleterious(0) probably_damaging(0.996) TCGA-06-6388-01 4 74735288 74735288 G T CXCL1 Splice_Site p.X34_splice 0.57 TCGA-06-6388-01 4 75174232 75174232 A T EPGN 5'UTR 0.35 TCGA-06-6388-01 4 96761394 96761394 C T PDHA2 Silent p.D31D 0.39 TCGA-06-6388-01 5 150925630 150925630 G A FAT2 Silent p.S1686S 0.35 TCGA-06-6388-01 5 67592121 67592121 T C PIK3R1 Missense_Mutation p.F646S 0.33 deleterious(0) probably_damaging(1) TCGA-06-6388-01 5 96320900 96320900 C T LNPEP Missense_Mutation p.T326I 0.38 tolerated(1) benign(0.012) TCGA-06-6388-01 6 168443353 168443353 G A KIF25 Silent p.P314P 0.37 TCGA-06-6388-01 6 46107513 46107513 G A ENPP4 Missense_Mutation p.V65I 0.29 tolerated(0.37) benign(0.093) TCGA-06-6388-01 7 100552564 100552564 G A MUC3A Missense_Mutation p.V439I 0.05 tolerated(0.47) possibly_damaging(0.618) TCGA-06-6388-01 7 4153898 4153898 G A SDK1 Missense_Mutation p.R1272Q 0.53 deleterious(0.01) possibly_damaging(0.671) TCGA-06-6388-01 7 81386513 81386513 G A HGF Silent p.H158H 0.28 TCGA-06-6388-01 8 119452171 119452171 C G SAMD12 Silent p.V74V 0.36 TCGA-06-6388-01 9 135961717 135961717 C T CELP RNA 0.26 TCGA-06-6388-01 X 10106937 10106937 C T WWC3 Silent p.D1015D 0.31 TCGA-06-6388-01 X 123205085 123205085 T A STAG2 Nonsense_Mutation p.Y815* 0.34 TCGA-06-6388-01 X 1428407 1428407 C T CSF2RA 3'UTR 0.38 TCGA-06-6388-01 X 54841851 54841851 C T MAGED2 Silent p.D519D 0.39 TCGA-06-6388-01 X 70368006 70368006 A G NLGN3 Missense_Mutation p.E136G 0.06 tolerated(0.06) benign(0.297) TCGA-06-6388-01 X 76937694 76937694 C A ATRX Missense_Mutation p.K1018N 0.38 probably_damaging(0.996) TCGA-06-6389-01 10 64572925 64572925 T C EGR2 3'UTR 0.03 TCGA-06-6389-01 10 73544851 73544851 T C CDH23 Silent p.N1907N 0.19 TCGA-06-6389-01 10 86017694 86017694 C T RGR Missense_Mutation p.P230S 0.30 deleterious(0) probably_damaging(1) TCGA-06-6389-01 11 128786674 128786674 A G KCNJ5 3'UTR 0.22 TCGA-06-6389-01 12 21968799 21968799 T G ABCC9 Silent p.P1307P 0.42 TCGA-06-6389-01 15 75042134 75042134 G A CYP1A2 Missense_Mutation p.A19T 0.06 tolerated(0.44) benign(0.015) TCGA-06-6389-01 16 21080790 21080790 C T DNAH3 Silent p.E1109E 0.15 TCGA-06-6389-01 16 70977832 70977832 G A HYDIN Silent p.P2184P 0.27 TCGA-06-6389-01 16 90095609 90095609 C T C16orf3 Missense_Mutation p.V48I 0.53 tolerated_low_confidence(0.84) benign(0) TCGA-06-6389-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.94 deleterious(0) probably_damaging(1) TCGA-06-6389-01 17 8700984 8700984 G A MFSD6L Silent p.P485P 0.07 TCGA-06-6389-01 19 39663979 39663979 C T PAK4 Missense_Mutation p.P209L 0.11 deleterious(0.01) probably_damaging(0.958) TCGA-06-6389-01 1 183177131 183177131 C T LAMC2 Silent p.C65C 0.40 TCGA-06-6389-01 1 211836944 211836944 C T NEK2 Missense_Mutation p.G388R 0.10 tolerated_low_confidence(0.12) benign(0.019) TCGA-06-6389-01 1 222801206 222801206 G T MIA3 Missense_Mutation p.S215I 0.16 deleterious(0) possibly_damaging(0.644) TCGA-06-6389-01 1 247655038 247655038 G A OR2W5 RNA 0.07 TCGA-06-6389-01 1 248202130 248202130 C G OR2L2 Silent p.A187A 0.06 TCGA-06-6389-01 1 27278819 27278819 G A C1orf172 Missense_Mutation p.P18L 0.17 deleterious_low_confidence(0) possibly_damaging(0.455) TCGA-06-6389-01 1 27876436 27876436 C A AHDC1 Missense_Mutation p.V731L 0.19 tolerated(0.09) benign(0.198) TCGA-06-6389-01 20 1600539 1600539 T A SIRPB1 Missense_Mutation p.T18S 0.15 tolerated(0.06) benign(0.055) TCGA-06-6389-01 20 30785118 30785118 G C PLAGL2 Missense_Mutation p.L210V 0.56 deleterious(0.01) benign(0.138) TCGA-06-6389-01 20 62153045 62153045 A C PPDPF Missense_Mutation p.H53P 0.04 tolerated(0.05) benign(0.069) TCGA-06-6389-01 21 19169182 19169182 T C C21orf91 Silent p.P127P 0.18 TCGA-06-6389-01 21 31973461 31973461 C T KRTAP22-1 Missense_Mutation p.H8Y 0.19 unknown(0) TCGA-06-6389-01 22 39382073 39382073 G A APOBEC3B Missense_Mutation p.R144H 0.33 tolerated(0.26) benign(0.005) TCGA-06-6389-01 22 46805742 46805742 G A CELSR1 Missense_Mutation p.R1657W 0.04 tolerated(0.39) benign(0.006) TCGA-06-6389-01 2 163302846 163302846 C G KCNH7 Missense_Mutation p.W412C 0.14 deleterious(0) probably_damaging(0.998) TCGA-06-6389-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-06-6389-01 2 27669199 27669200 AG - IFT172 Frame_Shift_Del p.S1561Cfs*18 0.20 TCGA-06-6389-01 2 97007486 97007486 G A NCAPH Silent p.A42A 0.21 TCGA-06-6389-01 3 47284680 47284680 A G KIF9 Missense_Mutation p.Y524H 0.08 tolerated(0.2) benign(0.012) TCGA-06-6389-01 3 50405101 50405101 C T CACNA2D2 Missense_Mutation p.G764S 0.11 deleterious(0) probably_damaging(0.944) TCGA-06-6389-01 4 40356616 40356616 T G CHRNA9 3'UTR 0.05 TCGA-06-6389-01 5 148754111 148754111 G A IL17B Silent p.L122L 0.23 TCGA-06-6389-01 5 35871249 35871249 G C IL7R Missense_Mutation p.K157N 0.21 deleterious(0.01) possibly_damaging(0.836) TCGA-06-6389-01 5 41382006 41382006 G T PLCXD3 Missense_Mutation p.S245Y 0.22 tolerated(0.07) probably_damaging(0.977) TCGA-06-6389-01 6 111214026 111214026 C T AMD1 Missense_Mutation p.S235L 0.19 tolerated(0.23) benign(0.016) TCGA-06-6389-01 6 31847948 31847948 A T EHMT2 Silent p.I1182I 0.51 TCGA-06-6389-01 7 112407451 112407451 C T TMEM168 Missense_Mutation p.G632E 0.12 tolerated(1) benign(0.001) TCGA-06-6389-01 7 122342705 122342705 C T RNF148 Missense_Mutation p.G34R 0.11 deleterious(0.02) possibly_damaging(0.794) TCGA-06-6389-01 7 149497496 149497496 C A SSPO RNA 0.11 TCGA-06-6389-01 8 110587269 110587269 G A SYBU Missense_Mutation p.P620S 0.12 deleterious(0) probably_damaging(1) TCGA-06-6389-01 8 122641322 122641322 G A HAS2 Missense_Mutation p.L87F 0.04 tolerated(0.1) probably_damaging(0.999) TCGA-06-6389-01 8 30705338 30705338 A T TEX15 Missense_Mutation p.V399D 0.40 deleterious(0) possibly_damaging(0.748) TCGA-06-6389-01 9 112963591 112963591 C T C9orf152 Silent p.T119T 0.10 TCGA-06-6389-01 9 136536684 136536684 C T SARDH Missense_Mutation p.A767T 0.29 deleterious(0) probably_damaging(0.971) TCGA-06-6389-01 9 137801822 137801822 G A FCN1 Missense_Mutation p.S268L 0.16 tolerated(0.26) benign(0.064) TCGA-06-6389-01 X 107435807 107435807 T C COL4A6 Missense_Mutation p.N360S 0.33 unknown(0) TCGA-06-6389-01 X 151820028 151820028 A C GABRQ Missense_Mutation p.H314P 0.31 deleterious(0.01) probably_damaging(0.999) TCGA-06-6389-01 X 154130354 154130354 C A F8 Missense_Mutation p.M2029I 0.07 deleterious(0.01) benign(0.219) TCGA-06-6389-01 X 15589843 15589843 C T ACE2 Missense_Mutation p.V581I 0.25 deleterious(0) benign(0.405) TCGA-06-6389-01 X 49030770 49030770 C T PLP2 Missense_Mutation p.T145I 0.17 deleterious(0) probably_damaging(0.998) TCGA-06-6389-01 X 71843109 71843109 A G PHKA1 Silent p.L604L 0.13 TCGA-06-6389-01 X 73751450 73751450 A G SLC16A2 3'UTR 0.17 TCGA-06-6389-01 X 78216344 78216344 C T P2RY10 Silent p.C109C 0.16 TCGA-06-6390-01 11 123901241 123901243 AGT - OR10G8 In_Frame_Del p.V305del 0.28 TCGA-06-6390-01 11 126299112 126299112 G A KIRREL3 Missense_Mutation p.R590W 0.10 deleterious(0) probably_damaging(0.997) TCGA-06-6390-01 11 57886023 57886023 T A OR9I1 Missense_Mutation p.K298N 0.30 deleterious(0.03) benign(0.014) TCGA-06-6390-01 11 64070987 64070987 C T TEX40 Missense_Mutation p.A129V 0.19 tolerated(0.7) benign(0.033) TCGA-06-6390-01 12 11150018 11150018 C G TAS2R20 Missense_Mutation p.V153L 0.13 tolerated(0.16) benign(0.033) TCGA-06-6390-01 12 56501039 56501039 A G RP11-603J24.9 Missense_Mutation p.Q112R 0.22 tolerated(0.23) benign(0.031) TCGA-06-6390-01 12 62778015 62778015 C G USP15 Missense_Mutation p.P469A 0.51 deleterious(0) probably_damaging(0.999) TCGA-06-6390-01 12 78415582 78415582 C G NAV3 Missense_Mutation p.P655A 0.12 tolerated(0.22) possibly_damaging(0.661) TCGA-06-6390-01 13 20039678 20039678 C T TPTE2 Missense_Mutation p.R180Q 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-06-6390-01 13 23908157 23908157 A C SACS Missense_Mutation p.F3286L 0.38 probably_damaging(0.965) TCGA-06-6390-01 13 24871773 24871773 C T SPATA13 Silent p.D1161D 0.27 TCGA-06-6390-01 13 29287613 29287613 T A SLC46A3 Silent p.T88T 0.18 TCGA-06-6390-01 15 41191638 41191638 C T VPS18 Missense_Mutation p.L208F 0.24 deleterious(0.01) possibly_damaging(0.722) TCGA-06-6390-01 15 43317593 43317593 T C UBR1 Missense_Mutation p.E857G 0.38 tolerated(0.12) benign(0.21) TCGA-06-6390-01 15 50593079 50593079 C T GABPB1 Missense_Mutation p.V214I 0.17 tolerated(0.13) possibly_damaging(0.891) TCGA-06-6390-01 16 15224550 15224550 G A RP11-1186N24.5 RNA 0.26 TCGA-06-6390-01 16 27460197 27460197 C A IL21R Missense_Mutation p.L404M 0.23 deleterious(0.01) probably_damaging(0.996) TCGA-06-6390-01 16 3299649 3299649 G A MEFV Missense_Mutation p.R348C 0.28 tolerated(0.23) benign(0) TCGA-06-6390-01 17 18058720 18058720 G A MYO15A Silent p.G2811G 0.33 TCGA-06-6390-01 17 6978469 6978469 G A CLEC10A Silent p.F285F 0.27 TCGA-06-6390-01 17 7495927 7495927 A G MPDU1 3'Flank 0.29 TCGA-06-6390-01 17 7721011 7721011 G A DNAH2 Missense_Mutation p.V3385I 0.34 possibly_damaging(0.591) TCGA-06-6390-01 17 78349661 78349663 CAC AA RNF213 Frame_Shift_Del p.T4393Sfs*8 0.20 TCGA-06-6390-01 18 71825425 71825425 G C TIMM21 Missense_Mutation p.D186H 0.30 deleterious(0.04) possibly_damaging(0.746) TCGA-06-6390-01 19 16528878 16528878 T C EPS15L1 Missense_Mutation p.K330E 0.13 tolerated(0.12) benign(0.013) TCGA-06-6390-01 19 17362437 17362437 G A USHBP1 Missense_Mutation p.R626W 0.05 deleterious(0) possibly_damaging(0.852) TCGA-06-6390-01 19 35786610 35786610 G A MAG Silent p.P47P 0.14 TCGA-06-6390-01 19 51628217 51628217 C T SIGLEC9 5'UTR 0.33 TCGA-06-6390-01 19 54745591 54745591 G T LILRA6 Missense_Mutation p.H173Q 0.13 deleterious(0.04) benign(0.118) TCGA-06-6390-01 19 58724586 58724586 C G ZNF274 3'UTR 0.35 TCGA-06-6390-01 19 629657 629657 G A POLRMT Silent p.L235L 0.08 TCGA-06-6390-01 1 101379278 101379278 G T SLC30A7 Missense_Mutation p.D191Y 0.30 deleterious(0.03) possibly_damaging(0.679) TCGA-06-6390-01 1 182787959 182787959 T G NPL Missense_Mutation p.S206R 0.27 tolerated(0.05) possibly_damaging(0.864) TCGA-06-6390-01 1 247024397 247024397 G A AHCTF1 Silent p.I1321I 0.25 TCGA-06-6390-01 1 247586553 247586553 C T NLRP3 Missense_Mutation p.S102L 0.28 tolerated(0.21) benign(0.022) TCGA-06-6390-01 22 25155854 25155854 C T PIWIL3 Missense_Mutation p.G69R 0.35 tolerated(0.68) benign(0.05) TCGA-06-6390-01 2 128238446 128238446 A G IWS1 3'UTR 0.15 TCGA-06-6390-01 2 179596192 179596192 G A TTN Silent p.S5767S 0.38 TCGA-06-6390-01 2 238451260 238451260 G T MLPH Silent p.T499T 0.24 TCGA-06-6390-01 3 183677612 183677612 T C ABCC5 Silent p.K797K 0.33 TCGA-06-6390-01 3 49142151 49142151 A G QARS Missense_Mutation p.S6P 0.22 tolerated(0.28) benign(0.001) TCGA-06-6390-01 3 49847050 49847050 C T UBA7 Silent p.A671A 0.20 TCGA-06-6390-01 4 187630082 187630082 G T FAT1 Silent p.L300L 0.45 TCGA-06-6390-01 4 82063966 82063966 C A PRKG2 Silent p.G463G 0.25 TCGA-06-6390-01 4 85691 85691 T C Z95704.2 RNA 0.25 TCGA-06-6390-01 5 161119060 161119060 G A GABRA6 Missense_Mutation p.V314I 0.24 deleterious(0.05) probably_damaging(0.997) TCGA-06-6390-01 5 178506220 178506220 C G ZNF354C Missense_Mutation p.Q263E 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-06-6390-01 5 178506472 178506472 C G ZNF354C Missense_Mutation p.Q347E 0.05 deleterious(0.01) probably_damaging(0.993) TCGA-06-6390-01 5 178506565 178506565 C A ZNF354C Missense_Mutation p.H378N 0.05 deleterious(0) probably_damaging(0.998) TCGA-06-6390-01 6 27860940 27860940 T C HIST1H2AM 5'UTR 0.22 TCGA-06-6390-01 6 27860941 27860941 G T HIST1H2AM 5'UTR 0.23 TCGA-06-6390-01 7 27168840 27168840 A C HOXA4 3'UTR 0.10 TCGA-06-6390-01 7 45930223 45930223 C T IGFBP1 Silent p.A142A 0.21 TCGA-06-6390-01 7 55910809 55910809 T C SEPT14 Missense_Mutation p.I128M 0.09 deleterious(0) probably_damaging(0.968) TCGA-06-6390-01 7 86526910 86526910 T C KIAA1324L Missense_Mutation p.Y866C 0.19 deleterious(0) probably_damaging(0.927) TCGA-06-6390-01 8 142186755 142186755 G A DENND3 Silent p.A787A 0.07 TCGA-06-6390-01 8 144945189 144945189 G A EPPK1 Missense_Mutation p.R745W 0.24 possibly_damaging(0.892) TCGA-06-6390-01 8 74941281 74941281 T C LY96 Missense_Mutation p.S159P 0.19 tolerated(0.09) benign(0.097) TCGA-06-6390-01 8 93017373 93017373 G A RUNX1T1 Silent p.N248N 0.04 TCGA-06-6390-01 9 105767006 105767006 T C CYLC2 Silent p.D70D 0.16 TCGA-06-6390-01 9 140058407 140058407 C T GRIN1 Intron 0.23 TCGA-06-6390-01 9 17791242 17791242 G A SH3GL2 Missense_Mutation p.S213N 0.29 tolerated(0.06) benign(0.01) TCGA-06-6390-01 X 78011562 78011562 T C LPAR4 3'UTR 0.69 TCGA-06-6391-01 10 97096883 97096883 C G SORBS1 Missense_Mutation p.E1012Q 0.21 deleterious_low_confidence(0) possibly_damaging(0.744) TCGA-06-6391-01 11 103797801 103797801 T C PDGFD Missense_Mutation p.N276D 0.14 deleterious(0) probably_damaging(0.961) TCGA-06-6391-01 11 57996044 57996044 C T OR10Q1 Missense_Mutation p.G102R 0.31 deleterious(0.01) benign(0.191) TCGA-06-6391-01 12 14840978 14840978 G A GUCY2C Silent p.N79N 0.11 TCGA-06-6391-01 12 18237578 18237578 G T RERGL Missense_Mutation p.L70I 0.22 tolerated(0.22) benign(0.213) TCGA-06-6391-01 12 40114778 40114778 A G C12orf40 Missense_Mutation p.N562D 0.13 tolerated(0.07) benign(0.066) TCGA-06-6391-01 12 40114932 40114932 A G C12orf40 Missense_Mutation p.Q613R 0.11 deleterious(0) probably_damaging(0.999) TCGA-06-6391-01 12 40114983 40114983 A C C12orf40 Missense_Mutation p.N630T 0.18 tolerated(0.14) benign(0.311) TCGA-06-6391-01 12 40153845 40153845 C T SLC2A13 Missense_Mutation p.A644T 0.14 deleterious_low_confidence(0.04) benign(0.344) TCGA-06-6391-01 12 57677642 57677642 C G R3HDM2 Missense_Mutation p.S365T 0.07 tolerated(0.12) benign(0.002) TCGA-06-6391-01 12 71286523 71286523 G A PTPRR Missense_Mutation p.A98V 0.18 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-06-6391-01 12 7276637 7276637 G A RBP5 3'UTR 0.07 TCGA-06-6391-01 12 7639374 7639374 G A CD163 Missense_Mutation p.R727C 0.13 deleterious(0.02) probably_damaging(0.977) TCGA-06-6391-01 12 85695019 85695019 G A ALX1 Missense_Mutation p.M249I 0.09 deleterious(0.02) benign(0.023) TCGA-06-6391-01 12 96389510 96389510 C T HAL Missense_Mutation p.G60D 0.24 tolerated_low_confidence(0.1) benign(0.078) TCGA-06-6391-01 13 109859183 109859183 G A MYO16 Silent p.%3D 0.25 TCGA-06-6391-01 13 113086755 113086755 C A SPACA7 Intron 0.09 TCGA-06-6391-01 13 33629339 33629339 T C KL Missense_Mutation p.F496L 0.20 deleterious(0.01) possibly_damaging(0.477) TCGA-06-6391-01 13 76055841 76055841 G A TBC1D4 Silent p.G21G 0.26 TCGA-06-6391-01 14 21623219 21623219 G A OR5AU1 Silent p.D322D 0.13 TCGA-06-6391-01 14 22279999 22279999 C T TRAV9-1 Missense_Mutation p.P63L 0.20 tolerated(0.65) benign(0.046) TCGA-06-6391-01 14 31782317 31782317 C T AL136418.1 3'Flank 0.15 TCGA-06-6391-01 14 35470222 35470222 T C SRP54 Missense_Mutation p.V84A 0.35 deleterious(0.04) benign(0.344) TCGA-06-6391-01 15 41137192 41137192 G A SPINT1 Missense_Mutation p.R147H 0.13 tolerated(0.2) benign(0.004) TCGA-06-6391-01 16 1291199 1291199 A G TPSAB1 Missense_Mutation p.E36G 0.22 tolerated(0.06) probably_damaging(0.953) TCGA-06-6391-01 16 15813552 15813552 G C MYH11 Missense_Mutation p.Q1665E 0.15 benign(0.428) TCGA-06-6391-01 16 18830977 18830977 C T SMG1 Splice_Site p.X3248_splice 0.25 TCGA-06-6391-01 16 21123036 21123036 G A DNAH3 Silent p.A670A 0.30 TCGA-06-6391-01 16 24166173 24166173 A G PRKCB Missense_Mutation p.T412A 0.21 deleterious(0) possibly_damaging(0.564) TCGA-06-6391-01 17 12667010 12667010 G A MYOCD 3'UTR 0.18 TCGA-06-6391-01 17 3181702 3181702 G C OR3A2 Missense_Mutation p.N176K 0.19 tolerated(0.71) benign(0.005) TCGA-06-6391-01 17 39140113 39140113 C T KRT40 Missense_Mutation p.R138H 0.17 tolerated(0.08) benign(0.001) TCGA-06-6391-01 18 61309010 61309010 G A SERPINB4 Missense_Mutation p.T112M 0.17 deleterious(0.02) benign(0.044) TCGA-06-6391-01 19 12863444 12863444 G A BEST2 Missense_Mutation p.R13H 0.23 deleterious(0.04) benign(0.274) TCGA-06-6391-01 19 16664592 16664592 G A SLC35E1 Silent p.H377H 0.20 TCGA-06-6391-01 19 41515193 41515193 C T CYP2B6 Nonsense_Mutation p.Q239* 0.15 TCGA-06-6391-01 1 13743092 13743092 G A PRAMEF20 Missense_Mutation p.R94H 0.25 tolerated(0.37) benign(0.006) TCGA-06-6391-01 1 156264001 156264001 T A C1orf85 Silent p.R202R 0.11 TCGA-06-6391-01 1 156841494 156841494 G A NTRK1 Nonsense_Mutation p.W266* 0.21 TCGA-06-6391-01 1 232574923 232574923 G A SIPA1L2 Missense_Mutation p.S1321F 0.25 deleterious(0.02) benign(0.372) TCGA-06-6391-01 1 23520158 23520158 C T HTR1D Missense_Mutation p.M185I 0.23 tolerated(0.42) benign(0.001) TCGA-06-6391-01 1 38305766 38305766 C T MTF1 Missense_Mutation p.R158Q 0.12 deleterious(0) probably_damaging(0.993) TCGA-06-6391-01 1 67861543 67861543 C T IL12RB2 Missense_Mutation p.T787M 0.14 deleterious(0.04) benign(0.302) TCGA-06-6391-01 1 90400304 90400304 C G LRRC8D Silent p.L559L 0.17 TCGA-06-6391-01 20 55021057 55021057 G A CASS4 Silent p.K187K 0.12 TCGA-06-6391-01 2 152476016 152476016 G A NEB Silent p.P3607P 0.22 TCGA-06-6391-01 2 21229086 21229086 C G APOB Missense_Mutation p.G3552R 0.19 probably_damaging(1) TCGA-06-6391-01 2 21245793 21245793 G A APOB Missense_Mutation p.S909L 0.14 benign(0.023) TCGA-06-6391-01 2 219509392 219509392 C T ZNF142 Missense_Mutation p.G616E 0.21 tolerated(0.8) benign(0.025) TCGA-06-6391-01 2 237103656 237103656 G A ASB18 Silent p.T420T 0.08 TCGA-06-6391-01 2 89185564 89185564 C T IGKV4-1 Silent p.D86D 0.21 TCGA-06-6391-01 3 121573665 121573665 A T EAF2 Missense_Mutation p.K111N 0.13 deleterious(0.05) benign(0.036) TCGA-06-6391-01 3 152163096 152163096 A T MBNL1 Missense_Mutation p.N192I 0.23 deleterious(0) possibly_damaging(0.886) TCGA-06-6391-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.50 tolerated(0.06) probably_damaging(0.998) TCGA-06-6391-01 3 38743393 38743393 G A SCN10A Nonsense_Mutation p.Q1532* 0.18 TCGA-06-6391-01 3 46414869 46414869 C T CCR5 Missense_Mutation p.A159V 0.17 tolerated(0.13) benign(0.072) TCGA-06-6391-01 3 52469856 52469856 C T SEMA3G Silent p.K704K 0.22 TCGA-06-6391-01 4 48106929 48106929 A G TXK Silent p.L164L 0.14 TCGA-06-6391-01 4 77283442 77283442 C A CCDC158 Missense_Mutation p.K619N 0.24 deleterious(0.01) probably_damaging(0.99) TCGA-06-6391-01 5 13871097 13871097 C T DNAH5 Missense_Mutation p.A1205T 0.13 possibly_damaging(0.499) TCGA-06-6391-01 5 140181903 140181903 T C PCDHA3 Missense_Mutation p.V374A 0.17 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-06-6391-01 5 151230995 151230995 T A GLRA1 Missense_Mutation p.T290S 0.07 tolerated(0.13) probably_damaging(0.998) TCGA-06-6391-01 5 41051145 41051145 T C MROH2B Silent p.E426E 0.17 TCGA-06-6391-01 6 135518189 135518189 C A MYB Missense_Mutation p.Q432K 0.05 tolerated(0.54) benign(0.003) TCGA-06-6391-01 6 145948736 145948736 C T EPM2A Missense_Mutation p.G271D 0.25 tolerated(0.07) probably_damaging(0.998) TCGA-06-6391-01 6 35922972 35922972 A T SLC26A8 Missense_Mutation p.M730K 0.11 deleterious(0) probably_damaging(0.994) TCGA-06-6391-01 7 100184146 100184146 T C FBXO24 5'Flank 0.12 TCGA-06-6391-01 7 148506237 148506237 A T EZH2 Silent p.V707V 0.11 TCGA-06-6391-01 7 40899925 40899925 G C SUGCT Silent p.V421V 0.24 TCGA-06-6391-01 7 40899950 40899950 G C SUGCT Missense_Mutation p.E430Q 0.26 tolerated(0.27) benign(0.026) TCGA-06-6391-01 7 87912074 87912074 C A STEAP4 Missense_Mutation p.C289F 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-06-6391-01 7 92905481 92905481 C T CCDC132 Missense_Mutation p.A269V 0.10 deleterious(0.04) possibly_damaging(0.73) TCGA-06-6391-01 8 77766549 77766549 G A ZFHX4 Silent p.S2464S 0.23 TCGA-06-6391-01 9 130965824 130965824 G A DNM1 Silent p.Q25Q 0.33 TCGA-06-6391-01 9 95050515 95050515 C T IARS Missense_Mutation p.G57R 0.12 deleterious(0) probably_damaging(1) TCGA-06-6391-01 X 100646547 100646547 C T RPL36A-HNRNPH2 Missense_Mutation p.A46V 0.19 tolerated_low_confidence(0.05) benign(0.045) TCGA-06-6391-01 X 18622176 18622176 C G CDKL5 Missense_Mutation p.P378A 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.539) TCGA-06-6391-01 X 22051086 22051086 A T PHEX 5'UTR 0.19 TCGA-06-6391-01 X 27998447 27998447 G C DCAF8L1 Silent p.V335V 0.14 TCGA-06-6391-01 X 35966473 35966473 T A CXorf22 Missense_Mutation p.I187N 0.16 deleterious(0) probably_damaging(0.931) TCGA-06-6391-01 X 43626865 43626865 C G MAOB Missense_Mutation p.D471H 0.15 deleterious(0) possibly_damaging(0.73) TCGA-06-6391-01 X 48458704 48458704 C A WDR13 Intron 0.13 TCGA-06-6391-01 X 76938530 76938530 C A ATRX Nonsense_Mutation p.E740* 0.21 TCGA-06-6693-01 10 395316 395316 C T DIP2C Missense_Mutation p.G1022S 0.71 tolerated(0.06) possibly_damaging(0.589) TCGA-06-6693-01 11 101818772 101818772 A G KIAA1377 Silent p.K135K 0.39 TCGA-06-6693-01 11 123676994 123676994 G A OR6M1 Nonsense_Mutation p.R22* 0.34 TCGA-06-6693-01 11 3688571 3688571 G A CHRNA10 Silent p.A262A 0.48 TCGA-06-6693-01 11 419726 419726 G T ANO9 Missense_Mutation p.T597N 0.47 deleterious(0) probably_damaging(0.979) TCGA-06-6693-01 11 55579782 55579782 C T OR5L1 Silent p.V280V 0.48 TCGA-06-6693-01 11 5906315 5906315 T A OR52E4 Missense_Mutation p.F265I 0.41 deleterious(0) probably_damaging(0.948) TCGA-06-6693-01 11 65977846 65977846 T C PACS1 Missense_Mutation p.I153T 0.50 tolerated(0.19) benign(0.132) TCGA-06-6693-01 12 123187006 123187006 C T HCAR2 Silent p.A275A 0.25 TCGA-06-6693-01 12 80191152 80191152 T C PPP1R12A Silent p.Q705Q 0.40 TCGA-06-6693-01 14 100705804 100705804 C G YY1 Missense_Mutation p.H75D 0.38 tolerated_low_confidence(0.05) unknown(0) TCGA-06-6693-01 14 38724093 38724093 T A CLEC14A Nonsense_Mutation p.K379* 0.51 TCGA-06-6693-01 14 38724649 38724649 G A CLEC14A Silent p.R193R 0.40 TCGA-06-6693-01 14 51227078 51227078 C G NIN Splice_Site p.X633_splice 0.39 TCGA-06-6693-01 14 61180418 61180418 G C SIX4 Missense_Mutation p.L685V 0.44 tolerated_low_confidence(0.12) probably_damaging(0.984) TCGA-06-6693-01 15 101569415 101569415 G A LRRK1 Missense_Mutation p.A981T 0.34 deleterious(0) probably_damaging(0.999) TCGA-06-6693-01 15 102292762 102292762 C T DNM1P47 RNA 0.12 TCGA-06-6693-01 15 40751318 40751318 C T BAHD1 Missense_Mutation p.R219W 0.36 deleterious(0) probably_damaging(0.994) TCGA-06-6693-01 15 62300907 62300907 C T VPS13C Silent p.A355A 0.40 TCGA-06-6693-01 15 72037463 72037463 T C THSD4 Missense_Mutation p.F642S 0.44 deleterious(0) benign(0.309) TCGA-06-6693-01 16 4245578 4245578 C T SRL Missense_Mutation p.E196K 0.45 deleterious(0) probably_damaging(0.974) TCGA-06-6693-01 16 88891241 88891241 C T GALNS Silent p.A392A 0.55 TCGA-06-6693-01 17 29119557 29119557 C G CRLF3 Missense_Mutation p.S287T 0.39 deleterious(0.01) possibly_damaging(0.597) TCGA-06-6693-01 17 61949661 61949661 C T CSH2 Missense_Mutation p.R160Q 0.80 tolerated(0.31) benign(0.001) TCGA-06-6693-01 17 7644166 7644166 C - DNAH2 Frame_Shift_Del p.Y516Tfs*11 0.32 TCGA-06-6693-01 19 10561526 10561526 C - PDE4A Frame_Shift_Del p.R232Gfs*35 0.48 TCGA-06-6693-01 19 17653014 17653014 A G FAM129C Missense_Mutation p.S445G 0.40 tolerated(0.35) benign(0.041) TCGA-06-6693-01 19 22155056 22155056 C T ZNF208 Missense_Mutation p.S927N 0.48 tolerated(0.71) unknown(0) TCGA-06-6693-01 19 44981361 44981361 A C ZNF180 Missense_Mutation p.F446C 0.48 deleterious(0) probably_damaging(1) TCGA-06-6693-01 19 51480744 51480744 C T KLK7 3'UTR 0.82 TCGA-06-6693-01 1 156917716 156917716 G A ARHGEF11 Missense_Mutation p.T729I 0.34 tolerated(0.23) benign(0.192) TCGA-06-6693-01 1 17084269 17084269 G T MST1L RNA 0.34 TCGA-06-6693-01 1 228494214 228494214 G A OBSCN Missense_Mutation p.R4891H 0.14 probably_damaging(0.958) TCGA-06-6693-01 1 91866655 91866655 T C HFM1 5'UTR 0.48 TCGA-06-6693-01 1 985841 985841 C T AGRN Nonsense_Mutation p.R1671* 0.51 TCGA-06-6693-01 20 2616589 2616589 T A TMC2 Missense_Mutation p.L775Q 0.53 deleterious(0) probably_damaging(0.999) TCGA-06-6693-01 20 44528299 44528299 T C PLTP Missense_Mutation p.K415R 0.52 deleterious(0.02) probably_damaging(0.986) TCGA-06-6693-01 20 62367145 62367145 G A ZGPAT Silent p.A490A 0.38 TCGA-06-6693-01 21 43523936 43523936 G C C21orf128 Missense_Mutation p.F99L 0.10 tolerated_low_confidence(0.75) benign(0) TCGA-06-6693-01 21 43524114 43524114 G C UMODL1 Missense_Mutation p.G479A 0.05 tolerated(0.12) benign(0.032) TCGA-06-6693-01 21 45710823 45710823 G C AIRE Intron 0.16 TCGA-06-6693-01 21 45817635 45817635 G C TRPM2 Missense_Mutation p.Q646H 0.12 tolerated(0.15) benign(0.043) TCGA-06-6693-01 2 110015136 110015136 G A SH3RF3 Missense_Mutation p.G346S 0.31 tolerated(0.32) benign(0.007) TCGA-06-6693-01 2 26532130 26532130 A C GPR113 3'Flank 0.33 TCGA-06-6693-01 2 89986382 89986382 C T IGKV2D-29 Silent p.L11L 0.05 TCGA-06-6693-01 3 93646100 93646100 C T PROS1 Silent p.P76P 0.45 TCGA-06-6693-01 4 175439163 175439163 T A HPGD Missense_Mutation p.N95Y 0.31 tolerated(0.17) probably_damaging(1) TCGA-06-6693-01 4 36085016 36085016 C T ARAP2 Silent p.V1494V 0.44 TCGA-06-6693-01 4 79204019 79204019 C T FRAS1 Nonsense_Mutation p.R385* 0.85 TCGA-06-6693-01 5 41382349 41382349 A G PLCXD3 Missense_Mutation p.F131L 0.34 deleterious(0) possibly_damaging(0.79) TCGA-06-6693-01 6 127469958 127469958 G A RSPO3 Missense_Mutation p.R88Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-06-6693-01 6 151687542 151687542 G T ZBTB2 Missense_Mutation p.T220N 0.40 tolerated(0.53) benign(0) TCGA-06-6693-01 7 143097029 143097029 C T EPHA1 Missense_Mutation p.A184T 0.34 deleterious(0) probably_damaging(0.999) TCGA-06-6693-01 7 20180649 20180649 C A MACC1 Nonsense_Mutation p.E827* 0.50 TCGA-06-6693-01 7 44009392 44009392 G A POLR2J4 Intron 0.50 TCGA-06-6693-01 7 55221763 55221763 C G EGFR Silent p.L269L 0.11 TCGA-06-6693-01 9 114145511 114145511 C T KIAA0368 Silent p.V1439V 0.28 TCGA-06-6693-01 9 16437497 16437497 C T BNC2 Missense_Mutation p.R232H 0.90 tolerated(0.53) benign(0.099) TCGA-06-6693-01 9 40716214 40716214 G A FAM74A3 RNA 0.26 TCGA-06-6693-01 9 95078415 95078415 G C NOL8 Missense_Mutation p.I164M 0.50 tolerated(0.61) benign(0.024) TCGA-06-6693-01 X 11166777 11166777 G A ARHGAP6 Intron 0.53 TCGA-06-6693-01 X 22132590 22132590 C G PHEX Silent p.T396T 0.32 TCGA-06-6693-01 X 35821053 35821053 G A MAGEB16 Missense_Mutation p.R247K 0.29 tolerated(0.32) benign(0.021) TCGA-06-6693-01 X 41587247 41587247 T G GPR82 Missense_Mutation p.L323R 0.37 deleterious(0.02) possibly_damaging(0.871) TCGA-06-6693-01 X 49021421 49021421 G A MAGIX Missense_Mutation p.R167H 0.48 tolerated(0.21) benign(0.103) TCGA-06-6694-01 10 95134679 95134679 G A MYOF Silent p.N714N 0.75 TCGA-06-6694-01 11 118403822 118403822 C T TMEM25 Silent p.T191T 0.67 TCGA-06-6694-01 11 124135295 124135295 G A OR8G5 Silent p.A191A 0.23 TCGA-06-6694-01 11 45827648 45827648 C T SLC35C1 Missense_Mutation p.P99L 0.79 deleterious(0) benign(0.146) TCGA-06-6694-01 11 55371296 55371296 A T OR4C11 Missense_Mutation p.L185H 0.64 deleterious(0) probably_damaging(0.999) TCGA-06-6694-01 11 55405976 55405976 C T OR4P4 Missense_Mutation p.T48M 0.05 tolerated(0.22) benign(0.046) TCGA-06-6694-01 11 56380780 56380780 A G OR5M1 Missense_Mutation p.S67P 0.22 deleterious(0.01) probably_damaging(0.998) TCGA-06-6694-01 11 56431356 56431356 C A OR5AR1 Missense_Mutation p.N65K 0.05 deleterious(0.01) possibly_damaging(0.723) TCGA-06-6694-01 11 6239211 6239211 G A FAM160A2 Silent p.G549G 0.11 TCGA-06-6694-01 11 68191121 68191121 G A LRP5 Silent p.G1064G 0.80 TCGA-06-6694-01 11 72005108 72005108 G A CLPB Silent p.D611D 0.43 TCGA-06-6694-01 12 120148180 120148180 C T CIT Silent p.V1649V 0.11 TCGA-06-6694-01 12 120208688 120208688 C T CIT Silent p.K703K 0.06 TCGA-06-6694-01 12 121471350 121471350 A G OASL Missense_Mutation p.V132A 0.06 tolerated(0.52) benign(0.01) TCGA-06-6694-01 12 130927081 130927081 G A RIMBP2 Silent p.S255S 0.67 TCGA-06-6694-01 12 53646716 53646716 T A MFSD5 Missense_Mutation p.C140S 0.08 tolerated(0.81) benign(0.002) TCGA-06-6694-01 13 25671129 25671129 C T PABPC3 Nonsense_Mutation p.R265* 0.19 TCGA-06-6694-01 14 20249075 20249075 G T OR4M1 Silent p.V198V 0.07 TCGA-06-6694-01 14 24040215 24040215 C T JPH4 Silent p.S575S 0.43 TCGA-06-6694-01 14 24635334 24635334 G A IRF9 Missense_Mutation p.E371K 0.35 deleterious(0) probably_damaging(1) TCGA-06-6694-01 15 25467344 25467344 G A SNORD115-27 3'Flank 0.36 TCGA-06-6694-01 15 43820051 43820051 C G MAP1A Missense_Mutation p.P2127R 0.19 possibly_damaging(0.905) TCGA-06-6694-01 15 49776594 49776594 G A FGF7 Missense_Mutation p.G160R 0.39 tolerated(0.08) probably_damaging(1) TCGA-06-6694-01 15 52404684 52404684 C T BCL2L10 Silent p.L80L 0.19 TCGA-06-6694-01 15 56387837 56387837 G T RFX7 Missense_Mutation p.Q697K 0.06 tolerated_low_confidence(1) benign(0.004) TCGA-06-6694-01 15 75248658 75248658 C A RPP25 Silent p.A89A 0.12 TCGA-06-6694-01 15 99251218 99251218 C T IGF1R Silent p.P174P 0.32 TCGA-06-6694-01 16 10788195 10788195 G A TEKT5 Missense_Mutation p.A179V 0.35 deleterious(0.01) benign(0.258) TCGA-06-6694-01 16 31286944 31286944 C T ITGAM Silent p.H311H 0.49 TCGA-06-6694-01 16 57992360 57992360 T C CNGB1 Missense_Mutation p.E264G 0.48 tolerated_low_confidence(0.06) probably_damaging(0.986) TCGA-06-6694-01 17 18135847 18135847 G A LLGL1 Missense_Mutation p.R73Q 0.17 tolerated(0.36) benign(0.001) TCGA-06-6694-01 17 49270165 49270165 T C MBTD1 Silent p.Q556Q 0.40 TCGA-06-6694-01 17 7154554 7154554 C T CTDNEP1 Nonsense_Mutation p.W21* 0.22 TCGA-06-6694-01 17 7158129 7158132 CCCC TTTT ELP5 Intron 0.22 TCGA-06-6694-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.69 deleterious(0) probably_damaging(1) TCGA-06-6694-01 17 7760481 7760503 CTCAGCCGCCGAGTCCTCGCGCT - LSMD1 Frame_Shift_Del p.E80Afs*32 0.71 TCGA-06-6694-01 17 8048179 8048179 G A PER1 Missense_Mutation p.S784F 0.26 deleterious(0) probably_damaging(0.998) TCGA-06-6694-01 18 45566526 45566526 G A ZBTB7C Missense_Mutation p.P318L 0.26 tolerated(0.52) benign(0.236) TCGA-06-6694-01 19 22270778 22270778 G A ZNF257 Splice_Site p.X76_splice 0.10 TCGA-06-6694-01 19 35175737 35175737 C G ZNF302 Silent p.A265A 0.23 TCGA-06-6694-01 19 49551985 49551985 G A CGB8 Silent p.F4F 0.03 TCGA-06-6694-01 19 58485726 58485726 C T C19orf18 Silent p.P25P 0.19 TCGA-06-6694-01 19 6680198 6680198 G T C3 Missense_Mutation p.A1476E 0.05 deleterious(0) possibly_damaging(0.834) TCGA-06-6694-01 19 8389585 8389585 C T KANK3 Missense_Mutation p.E738K 0.37 deleterious(0) possibly_damaging(0.486) TCGA-06-6694-01 1 12172043 12172043 C T TNFRSF8 Silent p.R255R 0.35 TCGA-06-6694-01 1 12952741 12952741 C T PRAMEF10 3'UTR 0.26 TCGA-06-6694-01 1 150730364 150730364 G A CTSS Silent p.Y73Y 0.55 TCGA-06-6694-01 1 152285059 152285059 G A FLG Missense_Mutation p.A768V 0.17 probably_damaging(0.989) TCGA-06-6694-01 1 163315530 163315530 G T NUF2 Missense_Mutation p.Q290H 0.42 deleterious(0) probably_damaging(0.987) TCGA-06-6694-01 1 186092310 186092310 G A HMCN1 Missense_Mutation p.V4153I 0.36 benign(0.307) TCGA-06-6694-01 1 200823985 200823985 C T CAMSAP2 Silent p.N1288N 0.19 TCGA-06-6694-01 1 241797187 241797187 G A CHML Missense_Mutation p.P628S 0.39 tolerated(0.9) benign(0.009) TCGA-06-6694-01 1 38227194 38227194 C T EPHA10 Missense_Mutation p.E245K 0.31 tolerated(0.08) probably_damaging(0.941) TCGA-06-6694-01 1 39924911 39924911 G A MACF1 Missense_Mutation p.R5058Q 0.40 probably_damaging(0.976) TCGA-06-6694-01 1 43912755 43912755 G A SZT2 Missense_Mutation p.G3011S 0.42 deleterious(0.01) probably_damaging(1) TCGA-06-6694-01 1 59248392 59248392 G A JUN Silent p.A117A 0.26 TCGA-06-6694-01 20 30409482 30409482 C T MYLK2 Silent p.S238S 0.09 TCGA-06-6694-01 20 43115268 43115268 T C TTPAL Silent p.H224H 0.06 TCGA-06-6694-01 21 38878577 38878577 G T DYRK1A Intron 0.40 TCGA-06-6694-01 21 44324297 44324297 A T NDUFV3 Missense_Mutation p.H392L 0.37 tolerated(0.3) benign(0.016) TCGA-06-6694-01 21 45513965 45513965 G A TRAPPC10 Missense_Mutation p.V1007M 0.41 tolerated(0.06) benign(0.126) TCGA-06-6694-01 21 47421892 47421892 G A COL6A1 Silent p.S658S 0.45 TCGA-06-6694-01 22 17072055 17072055 G A CCT8L2 Silent p.D462D 0.44 TCGA-06-6694-01 2 112944813 112944813 G A FBLN7 Silent p.T350T 0.50 TCGA-06-6694-01 2 168103045 168103045 C T XIRP2 Missense_Mutation p.R1715C 0.40 probably_damaging(0.944) TCGA-06-6694-01 2 169814525 169814525 C T ABCB11 Silent p.V764V 0.75 TCGA-06-6694-01 2 202272228 202272229 AG - TRAK2 Frame_Shift_Del p.F62Sfs*3 0.37 TCGA-06-6694-01 2 220286194 220286194 C T DES Missense_Mutation p.R386C 0.35 deleterious(0) probably_damaging(0.993) TCGA-06-6694-01 2 90139540 90139540 A G IGKV1D-16 Missense_Mutation p.D104G 0.28 deleterious(0) probably_damaging(0.956) TCGA-06-6694-01 3 101476715 101476715 G T CEP97 Missense_Mutation p.R422M 0.36 deleterious(0) possibly_damaging(0.77) TCGA-06-6694-01 3 68929927 68929927 G T FAM19A4 Nonsense_Mutation p.C28* 0.42 TCGA-06-6694-01 3 9489393 9489393 C T SETD5 Silent p.V602V 0.40 TCGA-06-6694-01 4 107845338 107845338 G A DKK2 Nonsense_Mutation p.R185* 0.59 TCGA-06-6694-01 4 1165082 1165082 G T SPON2 Missense_Mutation p.A138E 0.64 deleterious(0.01) possibly_damaging(0.767) TCGA-06-6694-01 4 96075770 96075770 G C BMPR1B Silent p.L515L 0.65 TCGA-06-6694-01 5 150704898 150704898 C T SLC36A2 Missense_Mutation p.R320Q 0.34 tolerated(0.28) benign(0.025) TCGA-06-6694-01 5 158743808 158743808 G A IL12B Missense_Mutation p.T291M 0.29 tolerated(0.25) benign(0.025) TCGA-06-6694-01 5 32390482 32390482 G A ZFR Missense_Mutation p.R681C 0.44 deleterious(0) unknown(0) TCGA-06-6694-01 5 71015195 71015195 C T CARTPT Silent p.T25T 0.34 TCGA-06-6694-01 5 74325583 74325583 C A GCNT4 Missense_Mutation p.D94Y 0.34 deleterious(0.02) benign(0.092) TCGA-06-6694-01 6 10410393 10410393 G A TFAP2A Missense_Mutation p.S74F 0.50 deleterious(0) possibly_damaging(0.83) TCGA-06-6694-01 6 110959910 110959910 C T CDK19 Splice_Site p.X153_splice 0.24 TCGA-06-6694-01 6 121560260 121560260 G A TBC1D32 Missense_Mutation p.P774S 0.42 deleterious(0) probably_damaging(1) TCGA-06-6694-01 6 1391312 1391312 A G FOXF2 Missense_Mutation p.E377G 0.18 deleterious(0) benign(0.032) TCGA-06-6694-01 6 160998167 160998167 C T LPA Splice_Site p.X1544_splice 0.22 TCGA-06-6694-01 6 43147010 43147010 C T SRF 3'UTR 0.27 TCGA-06-6694-01 6 70042889 70042889 A G BAI3 Silent p.K1059K 0.17 TCGA-06-6694-01 6 7327025 7327025 A T CAGE1 3'UTR 0.51 TCGA-06-6694-01 7 100490909 100490909 G A ACHE Silent p.H315H 0.24 TCGA-06-6694-01 7 100692247 100692247 G A MUC17 Silent p.T4219T 0.31 TCGA-06-6694-01 7 121653927 121653927 C - PTPRZ1 Frame_Shift_Del p.H1610Tfs*18 0.21 TCGA-06-6694-01 7 142561409 142561409 G A EPHB6 Missense_Mutation p.G41R 0.25 tolerated(0.48) benign(0.413) TCGA-06-6694-01 7 143792982 143792982 C A OR2A12 Missense_Mutation p.P261H 0.05 deleterious(0) probably_damaging(1) TCGA-06-6694-01 7 148979056 148979056 G A ZNF783 Silent p.G421G 0.37 TCGA-06-6694-01 7 5331368 5331368 G A SLC29A4 Missense_Mutation p.D154N 0.07 deleterious(0.01) benign(0.039) TCGA-06-6694-01 7 86468659 86468659 C T GRM3 Missense_Mutation p.S610L 0.04 deleterious(0) probably_damaging(0.993) TCGA-06-6694-01 7 97858368 97858368 C T TECPR1 Missense_Mutation p.G798E 0.43 deleterious(0) benign(0.126) TCGA-06-6694-01 7 99359709 99359709 C T CYP3A4 Missense_Mutation p.R403H 0.08 tolerated(0.32) benign(0.026) TCGA-06-6694-01 8 12952344 12952344 C T DLC1 Silent p.L1150L 0.27 TCGA-06-6694-01 8 15531274 15531274 A G TUSC3 Missense_Mutation p.T243A 0.15 tolerated(0.06) probably_damaging(0.932) TCGA-06-6694-01 8 22020640 22020640 C T SFTPC Silent p.A83A 0.39 TCGA-06-6694-01 8 24256489 24256489 A G ADAMDEC1 Missense_Mutation p.N289D 0.19 deleterious(0) possibly_damaging(0.701) TCGA-06-6694-01 9 5080558 5080558 A T JAK2 Missense_Mutation p.H770L 0.67 tolerated(0.72) possibly_damaging(0.862) TCGA-06-6694-01 9 96289441 96289441 A C FAM120A Missense_Mutation p.I475L 0.58 tolerated(0.11) benign(0.026) TCGA-06-6694-01 9 97063382 97063382 C T ZNF169 Silent p.Y514Y 0.63 TCGA-06-6694-01 X 102005060 102005060 T A BHLHB9 Silent p.P379P 0.32 TCGA-06-6694-01 X 115303527 115303527 T A AGTR2 5'UTR 0.47 TCGA-06-6694-01 X 119048716 119048716 G C AKAP14 Missense_Mutation p.D106H 0.33 deleterious(0) probably_damaging(0.997) TCGA-06-6694-01 X 125299171 125299171 C T DCAF12L2 Missense_Mutation p.R246H 0.45 tolerated(0.52) benign(0.009) TCGA-06-6694-01 X 134494349 134494349 C G ZNF449 Missense_Mutation p.S302C 0.12 tolerated(0.17) benign(0.008) TCGA-06-6694-01 X 13726841 13726841 G T RAB9A Intron 0.26 TCGA-06-6694-01 X 153581222 153581222 G A FLNA Silent p.D2099D 0.23 TCGA-06-6694-01 X 17819726 17819726 G A RAI2 Silent p.N135N 0.22 TCGA-06-6694-01 X 23731303 23731303 G T ACOT9 Missense_Mutation p.P204H 0.19 tolerated(0.17) benign(0.005) TCGA-06-6694-01 X 37027694 37027694 C T FAM47C Missense_Mutation p.P404L 0.47 tolerated(0.19) benign(0.163) TCGA-06-6694-01 X 47478794 47478794 C G SYN1 Missense_Mutation p.A112P 0.21 tolerated(0.06) benign(0.374) TCGA-06-6694-01 X 53439849 53439849 C T SMC1A Splice_Site p.X285_splice 0.33 TCGA-06-6694-01 X 73040625 73040625 C A XIST RNA 0.09 TCGA-06-6694-01 X 78216911 78216911 C T P2RY10 Silent p.C298C 0.51 TCGA-06-6694-01 X 90690820 90690820 G T PABPC5 Missense_Mutation p.D82Y 0.15 deleterious(0.01) probably_damaging(1) TCGA-06-6694-01 X 90690988 90690988 G A PABPC5 Missense_Mutation p.V138I 0.34 deleterious(0.04) benign(0.429) TCGA-06-6695-01 10 1284235 1284235 C T ADARB2 Silent p.A440A 0.54 TCGA-06-6695-01 10 135183513 135183513 C T ECHS1 Missense_Mutation p.M103I 0.65 deleterious(0) possibly_damaging(0.752) TCGA-06-6695-01 10 50530623 50530623 G A C10orf71 Silent p.A11A 0.60 TCGA-06-6695-01 10 62149275 62149275 A C ANK3 Missense_Mutation p.L8V 0.66 benign(0.341) TCGA-06-6695-01 11 119510587 119510587 G A RP11-196E1.3 RNA 0.36 TCGA-06-6695-01 11 126343282 126343282 G A KIRREL3 Silent p.H171H 0.69 TCGA-06-6695-01 11 47594600 47594600 C G KBTBD4 Missense_Mutation p.R496P 0.23 tolerated(0.25) probably_damaging(0.999) TCGA-06-6695-01 11 56432005 56432005 A G OR5AR1 Missense_Mutation p.I282V 0.07 deleterious(0.05) benign(0.241) TCGA-06-6695-01 11 86519032 86519032 G A PRSS23 Missense_Mutation p.R116Q 0.39 tolerated(0.64) benign(0.001) TCGA-06-6695-01 12 10600149 10600149 C T KLRC1 Missense_Mutation p.G191D 0.51 tolerated(0.11) benign(0.374) TCGA-06-6695-01 12 40715936 40715936 A G LRRK2 Missense_Mutation p.N1757S 0.40 tolerated(0.39) benign(0.004) TCGA-06-6695-01 12 48372465 48372465 G A COL2A1 Missense_Mutation p.P937L 0.47 unknown(0) TCGA-06-6695-01 12 49374347 49374348 - G WNT1 Frame_Shift_Ins p.C170Lfs*6 0.38 TCGA-06-6695-01 12 66788078 66788078 C T GRIP1 Missense_Mutation p.G628E 0.63 deleterious(0) probably_damaging(0.97) TCGA-06-6695-01 12 9230302 9230302 T C A2M Missense_Mutation p.I1091V 0.41 deleterious(0.02) benign(0.314) TCGA-06-6695-01 12 9345184 9345184 G A PZP Missense_Mutation p.T469M 0.40 tolerated(0.09) possibly_damaging(0.787) TCGA-06-6695-01 15 101464858 101464859 - C LRRK1 Frame_Shift_Ins p.S10Qfs*23 0.42 TCGA-06-6695-01 15 43568591 43568591 C T TGM7 3'UTR 0.33 TCGA-06-6695-01 15 45567788 45567788 G A SLC28A2 3'UTR 0.46 TCGA-06-6695-01 16 14041971 14041971 G A ERCC4 Missense_Mutation p.E840K 0.50 tolerated(0.27) benign(0.07) TCGA-06-6695-01 16 347056 347056 C G AXIN1 Missense_Mutation p.G652A 0.33 tolerated(0.2) possibly_damaging(0.615) TCGA-06-6695-01 16 81953271 81953271 T A PLCG2 Splice_Site p.X745_splice 0.33 TCGA-06-6695-01 16 89347130 89347130 G A ANKRD11 Silent p.S1940S 0.41 TCGA-06-6695-01 16 90124651 90124651 G A PRDM7 3'UTR 0.33 TCGA-06-6695-01 19 12813636 12813636 C T TNPO2 Splice_Site p.X769_splice 0.29 TCGA-06-6695-01 19 2278840 2278840 C T C19orf35 Missense_Mutation p.A119T 0.26 tolerated(0.51) benign(0.008) TCGA-06-6695-01 19 54297299 54297299 C G NLRP12 3'UTR 0.34 TCGA-06-6695-01 19 55327961 55327961 G A KIR3DL1 Silent p.S2S 0.48 TCGA-06-6695-01 19 6535006 6535006 G A TNFSF9 Missense_Mutation p.A232T 0.33 deleterious(0.04) benign(0.405) TCGA-06-6695-01 1 160106465 160106465 G A ATP1A2 Missense_Mutation p.R890Q 0.05 tolerated(0.2) benign(0.023) TCGA-06-6695-01 1 205897957 205897957 G A SLC26A9 Silent p.R317R 0.28 TCGA-06-6695-01 1 22924331 22924331 G A EPHA8 Missense_Mutation p.R698H 0.43 tolerated(0.42) benign(0.007) TCGA-06-6695-01 1 237659969 237659969 C A RYR2 Missense_Mutation p.P707H 0.38 probably_damaging(1) TCGA-06-6695-01 20 30674579 30674579 C T HCK Silent p.P328P 0.34 TCGA-06-6695-01 20 31829275 31829275 C T BPIFA1 Silent p.N222N 0.10 TCGA-06-6695-01 22 31059768 31059768 G A DUSP18 Missense_Mutation p.P75S 0.42 deleterious(0.02) possibly_damaging(0.558) TCGA-06-6695-01 22 42525154 42525154 C T CYP2D6 Missense_Mutation p.R129H 0.07 deleterious(0.01) benign(0.21) TCGA-06-6695-01 2 135745418 135745418 G A MAP3K19 Missense_Mutation p.P342S 0.47 tolerated(0.33) benign(0.043) TCGA-06-6695-01 2 173866027 173866027 G C RAPGEF4 Missense_Mutation p.C538S 0.36 tolerated(0.96) benign(0.312) TCGA-06-6695-01 2 46608818 46608818 G A EPAS1 Missense_Mutation p.R710Q 0.44 deleterious(0) possibly_damaging(0.873) TCGA-06-6695-01 2 69207132 69207132 G A GKN1 Missense_Mutation p.G149R 0.50 deleterious(0) probably_damaging(0.999) TCGA-06-6695-01 3 123008753 123008753 C T ADCY5 Missense_Mutation p.G1126S 0.44 deleterious(0) probably_damaging(0.93) TCGA-06-6695-01 3 14555293 14555293 G A GRIP2 RNA 0.25 TCGA-06-6695-01 3 32411523 32411523 G T CMTM8 3'UTR 0.38 TCGA-06-6695-01 3 38645338 38645338 G A SCN5A Silent p.H585H 0.37 TCGA-06-6695-01 3 62423805 62423805 C T CADPS Missense_Mutation p.E1251K 0.31 deleterious(0) benign(0.292) TCGA-06-6695-01 4 148944421 148944421 G A ARHGAP10 Missense_Mutation p.R575Q 0.39 tolerated(0.48) possibly_damaging(0.644) TCGA-06-6695-01 4 3534104 3534104 C G LRPAP1 Silent p.G12G 0.27 TCGA-06-6695-01 4 4190625 4190625 G T OTOP1 Missense_Mutation p.P582T 0.11 tolerated(0.37) benign(0.444) TCGA-06-6695-01 5 120021674 120021674 C A PRR16 Missense_Mutation p.T39N 0.47 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-06-6695-01 5 138658286 138658286 G A MATR3 Splice_Site p.X593_splice 0.55 TCGA-06-6695-01 5 149677472 149677472 G A ARSI Missense_Mutation p.R339W 0.46 tolerated(0.06) probably_damaging(0.941) TCGA-06-6695-01 5 180041121 180041121 G A FLT4 Missense_Mutation p.T1093M 0.33 deleterious(0.01) probably_damaging(0.934) TCGA-06-6695-01 5 67589149 67589151 ATT - PIK3R1 In_Frame_Del p.L380del 0.46 TCGA-06-6695-01 6 106999811 106999811 A T AIM1 Silent p.G1391G 0.40 TCGA-06-6695-01 6 38704949 38704949 G T DNAH8 Missense_Mutation p.G73V 0.42 probably_damaging(0.998) TCGA-06-6695-01 6 51900449 51900449 C T PKHD1 Silent p.S1056S 0.36 TCGA-06-6695-01 6 62604661 62604661 C T KHDRBS2 Missense_Mutation p.R230H 0.43 tolerated(0.16) benign(0.006) TCGA-06-6695-01 6 80881059 80881059 A G BCKDHB Missense_Mutation p.K232E 0.46 tolerated(0.32) benign(0.002) TCGA-06-6695-01 7 150269429 150269429 G A GIMAP4 Missense_Mutation p.D91N 0.21 tolerated(0.06) possibly_damaging(0.777) TCGA-06-6695-01 7 39612016 39612016 T C YAE1D1 Missense_Mutation p.V131A 0.37 tolerated(0.77) benign(0.118) TCGA-06-6695-01 7 44046879 44046879 T C SPDYE1 Silent p.N215N 0.28 TCGA-06-6695-01 7 55249017 55249018 - CCACGT EGFR In_Frame_Ins p.H773_V774dup 0.18 TCGA-06-6695-01 7 73245947 73245947 C T CLDN4 Missense_Mutation p.T139M 0.32 tolerated(0.15) benign(0.425) TCGA-06-6695-01 7 92733004 92733004 C T SAMD9 Missense_Mutation p.E803K 0.30 deleterious(0.03) possibly_damaging(0.463) TCGA-06-6695-01 8 144940800 144940800 G C EPPK1 Missense_Mutation p.Q2208E 0.34 benign(0.001) TCGA-06-6695-01 8 37698275 37698275 C A GPR124 Intron 0.33 TCGA-06-6695-01 9 135866288 135866288 G A GFI1B Missense_Mutation p.G282R 0.29 deleterious(0) probably_damaging(0.981) TCGA-06-6695-01 9 21441175 21441175 A T IFNA1 3'UTR 0.73 TCGA-06-6695-01 9 35739703 35739703 G T GBA2 Missense_Mutation p.L502I 0.14 tolerated(0.34) benign(0.001) TCGA-06-6695-01 X 114249014 114249014 C T IL13RA2 Missense_Mutation p.A124T 0.79 tolerated(0.43) benign(0.006) TCGA-06-6695-01 X 151336652 151336652 T G GABRA3 3'UTR 0.68 TCGA-06-6695-01 X 24721370 24721370 C A POLA1 Silent p.V51V 0.12 TCGA-06-6697-01 10 47086894 47086894 C T NPY4R Silent p.S37S 0.09 TCGA-06-6697-01 10 73567464 73567464 G A CDH23 Missense_Mutation p.V594I 0.31 tolerated(1) benign(0.013) TCGA-06-6697-01 10 95119651 95119651 C T MYOF Missense_Mutation p.R1020Q 0.27 deleterious(0) probably_damaging(1) TCGA-06-6697-01 11 102575419 102575419 G A MMP27 Missense_Mutation p.R64W 0.25 deleterious(0) probably_damaging(0.911) TCGA-06-6697-01 11 108345675 108345675 T A KDELC2 Missense_Mutation p.Y468F 0.24 tolerated(0.09) possibly_damaging(0.903) TCGA-06-6697-01 11 15198673 15198673 T C INSC Missense_Mutation p.M187T 0.04 tolerated(0.14) benign(0.067) TCGA-06-6697-01 11 5221570 5221570 A T OR51V1 Missense_Mutation p.S121T 0.31 deleterious(0.01) probably_damaging(0.971) TCGA-06-6697-01 11 57982888 57982888 T C OR1S1 Silent p.F224F 0.22 TCGA-06-6697-01 11 7960995 7960995 C T OR10A3 Missense_Mutation p.V25M 0.27 tolerated(0.15) benign(0.139) TCGA-06-6697-01 12 10277922 10277922 G C CLEC7A Missense_Mutation p.L156V 0.30 deleterious(0.01) benign(0.084) TCGA-06-6697-01 12 105519878 105519878 A G KIAA1033 Missense_Mutation p.I295V 0.25 tolerated(0.39) benign(0.029) TCGA-06-6697-01 12 10587963 10587963 G T KLRC2 Silent p.I78I 0.10 TCGA-06-6697-01 12 58162873 58162873 C T METTL1 Missense_Mutation p.R246H 0.08 deleterious(0) probably_damaging(0.998) TCGA-06-6697-01 12 85459186 85459186 T C LRRIQ1 Silent p.D846D 0.10 TCGA-06-6697-01 15 76301577 76301577 C A NRG4 Missense_Mutation p.C23F 0.26 deleterious(0) probably_damaging(1) TCGA-06-6697-01 16 2812703 2812703 G A SRRM2 Missense_Mutation p.G725D 0.19 unknown(0) TCGA-06-6697-01 16 53276816 53276816 G T CHD9 Missense_Mutation p.G981V 0.08 probably_damaging(0.991) TCGA-06-6697-01 16 80718602 80718602 T C CDYL2 Missense_Mutation p.K150R 0.20 tolerated(0.2) benign(0.006) TCGA-06-6697-01 17 21205510 21205510 G A MAP2K3 Missense_Mutation p.R152Q 0.07 deleterious(0.02) benign(0.008) TCGA-06-6697-01 17 29632208 29632208 C A EVI2B Missense_Mutation p.K140N 0.29 tolerated(0.4) benign(0) TCGA-06-6697-01 17 29632210 29632210 T G EVI2B Missense_Mutation p.K140Q 0.28 tolerated(0.72) benign(0) TCGA-06-6697-01 17 33904178 33904178 G A PEX12 Nonsense_Mutation p.Q187* 0.40 TCGA-06-6697-01 17 56699012 56699012 C A TEX14 Nonsense_Mutation p.G185* 0.15 TCGA-06-6697-01 19 10748353 10748353 C T SLC44A2 Missense_Mutation p.T542I 0.19 deleterious(0.04) benign(0.005) TCGA-06-6697-01 19 12575471 12575471 C T ZNF709 Missense_Mutation p.C422Y 0.20 deleterious(0) benign(0.146) TCGA-06-6697-01 19 37975633 37975633 G A ZNF570 Missense_Mutation p.R370H 0.18 tolerated(0.22) probably_damaging(0.984) TCGA-06-6697-01 19 47422855 47422855 A G ARHGAP35 Missense_Mutation p.Y308C 0.29 deleterious(0) probably_damaging(0.999) TCGA-06-6697-01 19 48374707 48374707 G C SULT2A1 3'UTR 0.17 TCGA-06-6697-01 19 7998999 7998999 G T TIMM44 Missense_Mutation p.T173K 0.30 deleterious(0) possibly_damaging(0.781) TCGA-06-6697-01 1 114454524 114454524 C G DCLRE1B Missense_Mutation p.S437C 0.18 tolerated_low_confidence(0.07) benign(0.005) TCGA-06-6697-01 1 12919080 12919080 G A PRAMEF2 Silent p.T72T 0.20 TCGA-06-6697-01 1 159170782 159170782 C T CADM3 3'UTR 0.28 TCGA-06-6697-01 1 16199442 16199442 G C SPEN Missense_Mutation p.R72T 0.13 probably_damaging(0.997) TCGA-06-6697-01 1 197313558 197313558 C A CRB1 Missense_Mutation p.A267D 0.19 tolerated(0.21) benign(0.071) TCGA-06-6697-01 1 201190709 201190709 C T IGFN1 Missense_Mutation p.L3346F 0.28 probably_damaging(0.994) TCGA-06-6697-01 1 207646928 207646928 A G CR2 Missense_Mutation p.T673A 0.21 tolerated(0.38) possibly_damaging(0.835) TCGA-06-6697-01 1 223285038 223285038 G A TLR5 Missense_Mutation p.R446W 0.21 deleterious(0) possibly_damaging(0.531) TCGA-06-6697-01 1 23720438 23720438 G A TCEA3 Silent p.P251P 0.07 TCGA-06-6697-01 1 247712504 247712504 A T GCSAML Missense_Mutation p.Y4F 0.35 tolerated_low_confidence(0.69) possibly_damaging(0.801) TCGA-06-6697-01 1 43817970 43817970 G A MPL Missense_Mutation p.S550N 0.19 tolerated(0.14) benign(0.038) TCGA-06-6697-01 1 57480758 57480758 C T DAB1 Silent p.T414T 0.15 TCGA-06-6697-01 20 17446060 17446060 G A PCSK2 Missense_Mutation p.R431H 0.25 tolerated(0.39) probably_damaging(0.964) TCGA-06-6697-01 20 58444912 58444912 G A SYCP2 Missense_Mutation p.R1228W 0.15 tolerated(0.19) benign(0.409) TCGA-06-6697-01 21 46021295 46021295 A C KRTAP10-7 Silent p.P258P 0.20 TCGA-06-6697-01 22 21342314 21342314 A C LZTR1 Missense_Mutation p.D139A 0.09 deleterious(0) probably_damaging(1) TCGA-06-6697-01 22 26348345 26348345 G C MYO18B Missense_Mutation p.E1976Q 0.26 deleterious(0.01) probably_damaging(1) TCGA-06-6697-01 22 45750854 45750854 G C SMC1B Missense_Mutation p.Q1035E 0.22 deleterious(0.04) possibly_damaging(0.55) TCGA-06-6697-01 2 136682064 136682074 GATGTCTAGAA - DARS Splice_Site p.X189_splice 0.23 TCGA-06-6697-01 2 163074520 163074520 T A FAP Missense_Mutation p.R246S 0.24 tolerated(0.3) probably_damaging(0.999) TCGA-06-6697-01 2 169939876 169939876 C T DHRS9 Silent p.G117G 0.25 TCGA-06-6697-01 2 179599471 179599471 G A TTN Silent p.V5060V 0.25 TCGA-06-6697-01 2 46609718 46609718 G A EPAS1 Silent p.S814S 0.21 TCGA-06-6697-01 3 132217972 132217972 T A DNAJC13 Missense_Mutation p.L1387I 0.28 deleterious(0.01) probably_damaging(0.986) TCGA-06-6697-01 3 132361623 132361623 C A ACAD11 Missense_Mutation p.Q91H 0.21 deleterious(0.01) probably_damaging(0.992) TCGA-06-6697-01 3 182559871 182559871 G T ATP11B Missense_Mutation p.G222V 0.21 deleterious(0) probably_damaging(0.999) TCGA-06-6697-01 3 19574969 19574969 C T KCNH8 Missense_Mutation p.P901L 0.24 deleterious(0.03) benign(0.002) TCGA-06-6697-01 3 47041686 47041686 G T NBEAL2 Missense_Mutation p.G1366V 0.25 tolerated(0.18) benign(0.347) TCGA-06-6697-01 3 48685382 48685382 G A CELSR3 Missense_Mutation p.R2341C 0.19 deleterious(0.01) benign(0.06) TCGA-06-6697-01 5 131821402 131821402 G A IRF1 Missense_Mutation p.T225I 0.18 tolerated(0.39) benign(0.393) TCGA-06-6697-01 5 13717485 13717485 G A DNAH5 Missense_Mutation p.A4215V 0.22 possibly_damaging(0.798) TCGA-06-6697-01 5 37183582 37183582 A C C5orf42 Silent p.P1567P 0.28 TCGA-06-6697-01 6 29408603 29408603 C A OR10C1 Missense_Mutation p.P271T 0.05 deleterious(0) possibly_damaging(0.783) TCGA-06-6697-01 6 43308071 43308072 TC - ZNF318 Frame_Shift_Del p.E1222Sfs*5 0.22 TCGA-06-6697-01 6 7576571 7576571 G A DSP Missense_Mutation p.R892H 0.14 probably_damaging(0.975) TCGA-06-6697-01 6 76023523 76023523 G C FILIP1 Missense_Mutation p.N675K 0.22 tolerated(0.97) benign(0.065) TCGA-06-6697-01 7 106523501 106523501 G A PIK3CG Missense_Mutation p.A885T 0.09 deleterious(0) probably_damaging(0.977) TCGA-06-6697-01 7 148909483 148909483 G A ZNF282 Missense_Mutation p.R329Q 0.09 tolerated(0.34) possibly_damaging(0.895) TCGA-06-6697-01 7 4050626 4050626 C T SDK1 Silent p.N720N 0.22 TCGA-06-6697-01 7 45932716 45932716 C T IGFBP1 3'UTR 0.20 TCGA-06-6697-01 7 82579889 82579889 C A PCLO Missense_Mutation p.G3339C 0.16 unknown(0) TCGA-06-6697-01 7 87049323 87049323 C T ABCB4 Missense_Mutation p.M795I 0.13 tolerated(0.16) benign(0.19) TCGA-06-6697-01 8 133806658 133806658 A G PHF20L1 Missense_Mutation p.Y29C 0.30 deleterious(0) probably_damaging(0.999) TCGA-06-6697-01 8 1497738 1497738 G T DLGAP2 Silent p.T293T 0.18 TCGA-06-6697-01 8 71057069 71057069 G A NCOA2 Nonsense_Mutation p.R874* 0.35 TCGA-06-6697-01 9 91973081 91973081 G A SECISBP2 Silent p.L812L 0.17 TCGA-06-6697-01 X 125299442 125299442 C T DCAF12L2 Missense_Mutation p.E156K 0.27 deleterious(0.01) possibly_damaging(0.504) TCGA-06-6697-01 X 73047543 73047543 A T XIST RNA 0.38 TCGA-06-6697-01 Y 5605925 5605925 G A PCDH11Y Missense_Mutation p.R1322H 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.646) TCGA-06-6698-01 10 48389610 48389610 T A RBP3 Missense_Mutation p.Q423L 0.15 tolerated(0.15) benign(0.019) TCGA-06-6698-01 11 120352059 120352059 C T ARHGEF12 Missense_Mutation p.T1443I 0.10 deleterious_low_confidence(0.02) benign(0.025) TCGA-06-6698-01 11 4790374 4790374 C T OR51F1 Silent p.L258L 0.15 TCGA-06-6698-01 11 62985164 62985164 C T SLC22A25 Missense_Mutation p.A184T 0.71 deleterious(0.05) possibly_damaging(0.867) TCGA-06-6698-01 12 49726939 49726939 G A C1QL4 Silent p.D205D 0.60 TCGA-06-6698-01 13 39613426 39613426 G A NHLRC3 Splice_Site p.X79_splice 0.13 TCGA-06-6698-01 13 48916734 48916734 G A RB1 Splice_Site p.X89_splice 0.14 TCGA-06-6698-01 13 48941637 48941641 ATCTT G RB1 Frame_Shift_Del p.N316Sfs*15 0.11 TCGA-06-6698-01 14 105936268 105936268 C T MTA1 Missense_Mutation p.R646W 0.28 deleterious(0) probably_damaging(0.993) TCGA-06-6698-01 14 39722526 39722526 A G MIA2 3'UTR 0.18 TCGA-06-6698-01 16 2134716 2134716 G A TSC2 Missense_Mutation p.S1498N 0.11 deleterious(0) possibly_damaging(0.735) TCGA-06-6698-01 16 27373977 27373977 C G IL4R Missense_Mutation p.P435R 0.73 deleterious(0.03) possibly_damaging(0.839) TCGA-06-6698-01 16 61689535 61689535 C A CDH8 Missense_Mutation p.G582V 0.75 deleterious(0) probably_damaging(0.99) TCGA-06-6698-01 16 81078594 81078594 T C ATMIN 3'UTR 0.06 TCGA-06-6698-01 16 9862916 9862916 A T GRIN2A Missense_Mutation p.L796H 0.61 deleterious(0) probably_damaging(0.995) TCGA-06-6698-01 17 21318689 21318689 T G KCNJ12 Missense_Mutation p.I12S 0.11 deleterious(0) possibly_damaging(0.902) TCGA-06-6698-01 17 29661898 29661898 G A NF1 Nonsense_Mutation p.W1952* 0.65 TCGA-06-6698-01 17 42942379 42942379 G A EFTUD2 Missense_Mutation p.H402Y 0.84 tolerated(1) benign(0.004) TCGA-06-6698-01 17 56344837 56344837 C T LPO Silent p.I607I 0.57 TCGA-06-6698-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.76 tolerated(0.11) benign(0.308) TCGA-06-6698-01 18 56203541 56203541 A G ALPK2 Missense_Mutation p.I1293T 0.40 tolerated(0.94) benign(0) TCGA-06-6698-01 18 61471670 61471670 G A SERPINB7 Missense_Mutation p.R315H 0.39 tolerated(0.12) probably_damaging(0.992) TCGA-06-6698-01 18 77624159 77624159 C T KCNG2 Silent p.R164R 0.35 TCGA-06-6698-01 19 46733408 46733408 C T IGFL1 Silent p.H23H 0.07 TCGA-06-6698-01 19 7812212 7812212 C T CD209 Missense_Mutation p.R29Q 0.04 tolerated(0.28) benign(0.027) TCGA-06-6698-01 1 1392509 1392509 C T ATAD3C Silent p.G230G 0.53 TCGA-06-6698-01 1 145310005 145310005 C T NBPF10 Silent p.Y581Y 0.22 TCGA-06-6698-01 1 145517332 145517332 C T PEX11B Missense_Mutation p.P39L 0.04 tolerated(0.15) benign(0.023) TCGA-06-6698-01 1 15441012 15441012 G A KAZN Missense_Mutation p.D737N 0.80 tolerated_low_confidence(0.12) probably_damaging(0.985) TCGA-06-6698-01 1 179460808 179460808 C G AXDND1 Missense_Mutation p.R743G 0.76 deleterious(0.05) benign(0.002) TCGA-06-6698-01 1 21106349 21106349 G A HP1BP3 Missense_Mutation p.T51I 0.69 deleterious(0) probably_damaging(0.939) TCGA-06-6698-01 21 45092195 45092195 C A RRP1B Missense_Mutation p.L74I 0.81 deleterious(0) probably_damaging(0.994) TCGA-06-6698-01 2 217285033 217285033 C T SMARCAL1 Nonsense_Mutation p.Q292* 0.86 TCGA-06-6698-01 3 138374298 138374298 A C PIK3CB Missense_Mutation p.L1049R 0.10 deleterious(0) probably_damaging(0.996) TCGA-06-6698-01 3 39184657 39184657 C T CSRNP1 Silent p.L553L 0.11 TCGA-06-6698-01 4 40440532 40440532 C T RBM47 Missense_Mutation p.A127T 0.66 deleterious(0.01) benign(0.417) TCGA-06-6698-01 5 102891710 102891710 C T NUDT12 Missense_Mutation p.G296S 0.09 tolerated(0.08) probably_damaging(0.973) TCGA-06-6698-01 5 140711002 140711002 G A PCDHGA1 Missense_Mutation p.V251I 0.75 tolerated_low_confidence(0.09) benign(0.308) TCGA-06-6698-01 5 39202820 39202820 C T FYB Silent p.P91P 0.71 TCGA-06-6698-01 7 2951813 2951813 G A CARD11 Missense_Mutation p.A1046V 0.36 tolerated(0.15) benign(0.108) TCGA-06-6698-01 7 8791355 8791355 G A NXPH1 Missense_Mutation p.D258N 0.12 deleterious(0) probably_damaging(0.997) TCGA-06-6698-01 8 143956491 143956491 C G CYP11B1 Missense_Mutation p.R427P 0.11 deleterious(0) probably_damaging(0.999) TCGA-06-6698-01 9 139369673 139369673 C G SEC16A Missense_Mutation p.E799Q 0.77 deleterious(0.01) possibly_damaging(0.864) TCGA-06-6698-01 9 86571236 86571236 G A C9orf64 Silent p.A60A 0.54 TCGA-06-6699-01 11 102826186 102826186 C T MMP13 Missense_Mutation p.A53T 0.40 tolerated(0.57) benign(0.159) TCGA-06-6699-01 11 124135517 124135517 C A OR8G5 Nonsense_Mutation p.Y265* 0.49 TCGA-06-6699-01 11 58949764 58949764 C T DTX4 Missense_Mutation p.S255L 0.38 tolerated(0.41) benign(0.001) TCGA-06-6699-01 12 111785603 111785603 G A CUX2 Missense_Mutation p.G1312D 0.52 tolerated_low_confidence(0.24) benign(0) TCGA-06-6699-01 12 2786403 2786403 C T CACNA1C Intron 0.20 TCGA-06-6699-01 12 56733735 56733735 T C IL23A Silent p.G139G 0.44 TCGA-06-6699-01 13 51825704 51825704 C T FAM124A Silent p.N103N 0.32 TCGA-06-6699-01 14 65569050 65569050 T A MAX Missense_Mutation p.D3V 0.82 deleterious(0) probably_damaging(0.912) TCGA-06-6699-01 14 77942269 77942269 C T ISM2 Missense_Mutation p.R462H 0.83 tolerated(0.07) benign(0.4) TCGA-06-6699-01 15 24921107 24921107 C T NPAP1 Silent p.D31D 0.55 TCGA-06-6699-01 15 28273201 28273201 G A OCA2 Missense_Mutation p.R111W 0.53 tolerated_low_confidence(0.21) benign(0.002) TCGA-06-6699-01 15 44150913 44150913 G A WDR76 Missense_Mutation p.S485N 0.41 tolerated(0.67) benign(0.02) TCGA-06-6699-01 16 1129345 1129345 G A SSTR5 Silent p.A159A 0.28 TCGA-06-6699-01 16 1814345 1814345 A G MAPK8IP3 Missense_Mutation p.N721S 0.55 tolerated(0.3) benign(0) TCGA-06-6699-01 16 77356301 77356301 C T ADAMTS18 Missense_Mutation p.G699S 0.40 tolerated(0.74) benign(0.003) TCGA-06-6699-01 17 18022706 18022706 G A MYO15A Missense_Mutation p.A198T 0.46 possibly_damaging(0.711) TCGA-06-6699-01 17 18891569 18891569 C T FAM83G Silent p.G227G 0.39 TCGA-06-6699-01 17 61560507 61560507 G A ACE Missense_Mutation p.R487H 0.44 tolerated(0.14) probably_damaging(0.938) TCGA-06-6699-01 17 80213441 80213441 G A CSNK1D Missense_Mutation p.T67I 0.28 tolerated_low_confidence(0.22) benign(0.004) TCGA-06-6699-01 18 14803789 14803789 A G ANKRD30B Silent p.Q750Q 0.09 TCGA-06-6699-01 18 59757728 59757728 C T PIGN Missense_Mutation p.G755D 0.20 tolerated(0.05) benign(0.062) TCGA-06-6699-01 18 77623839 77623839 G A KCNG2 Missense_Mutation p.V58M 0.50 deleterious(0) possibly_damaging(0.787) TCGA-06-6699-01 19 16025652 16025652 C T CYP4F11 Missense_Mutation p.R390Q 0.30 deleterious(0) probably_damaging(1) TCGA-06-6699-01 19 2278816 2278816 C A C19orf35 Missense_Mutation p.D127Y 0.38 tolerated(0.05) possibly_damaging(0.788) TCGA-06-6699-01 19 35175342 35175342 C G ZNF302 Missense_Mutation p.L134V 0.34 tolerated(0.06) benign(0.019) TCGA-06-6699-01 19 41083170 41083170 C A SHKBP1 Silent p.I40I 0.49 TCGA-06-6699-01 19 54782692 54782692 G A LILRB2 Silent p.S310S 0.33 TCGA-06-6699-01 19 56047476 56047476 G A SBK2 Silent p.Y62Y 0.40 TCGA-06-6699-01 19 7833851 7833851 G A CLEC4M Missense_Mutation p.A393T 0.34 deleterious(0.04) benign(0.003) TCGA-06-6699-01 19 8148157 8148157 G T FBN3 Missense_Mutation p.P2396Q 0.31 tolerated(0.17) possibly_damaging(0.759) TCGA-06-6699-01 19 9056233 9056233 C T MUC16 Missense_Mutation p.V10405I 0.23 benign(0.017) TCGA-06-6699-01 19 9965148 9965148 G A OLFM2 Missense_Mutation p.S360F 0.37 deleterious(0) probably_damaging(0.972) TCGA-06-6699-01 1 236343286 236343286 C T GPR137B Silent p.S265S 0.54 TCGA-06-6699-01 1 54605749 54605749 C A CDCP2 Missense_Mutation p.R265L 0.05 deleterious(0.03) possibly_damaging(0.617) TCGA-06-6699-01 1 9790449 9790449 A G CLSTN1 3'UTR 0.47 TCGA-06-6699-01 20 3655285 3655285 G A ADAM33 Missense_Mutation p.R156W 0.07 deleterious(0.03) benign(0.004) TCGA-06-6699-01 20 5904558 5904558 G A CHGB Missense_Mutation p.A590T 0.34 deleterious(0.04) benign(0.14) TCGA-06-6699-01 20 61959711 61959711 C T COL20A1 Silent p.H1214H 0.33 TCGA-06-6699-01 20 9543605 9543605 C T PAK7 Missense_Mutation p.D517N 0.39 deleterious(0.01) benign(0.339) TCGA-06-6699-01 21 37833779 37833779 G A CLDN14 Missense_Mutation p.A72V 0.43 tolerated(0.06) probably_damaging(0.997) TCGA-06-6699-01 22 32352631 32352631 A G YWHAH Missense_Mutation p.K198R 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.882) TCGA-06-6699-01 2 219920384 219920384 C T IHH Missense_Mutation p.E261K 0.54 tolerated(0.09) benign(0.109) TCGA-06-6699-01 3 195965686 195965686 C T PCYT1A Missense_Mutation p.R326H 0.44 tolerated(0.24) benign(0.001) TCGA-06-6699-01 4 155157533 155157533 G A DCHS2 Silent p.V2302V 0.52 TCGA-06-6699-01 4 38777038 38777038 G T TLR10 Missense_Mutation p.N58K 0.39 deleterious(0.03) possibly_damaging(0.64) TCGA-06-6699-01 4 39839671 39839671 C T PDS5A Missense_Mutation p.R1272H 0.51 deleterious_low_confidence(0.01) possibly_damaging(0.817) TCGA-06-6699-01 4 71347686 71347686 T C MUC7 3'UTR 0.65 TCGA-06-6699-01 5 137045486 137045486 C T KLHL3 Missense_Mutation p.R65H 0.40 deleterious(0) probably_damaging(0.992) TCGA-06-6699-01 5 140188686 140188686 C T PCDHA4 Silent p.D638D 0.41 TCGA-06-6699-01 5 140736994 140736994 G A PCDHGA4 Missense_Mutation p.V743M 0.43 tolerated_low_confidence(0.15) benign(0.105) TCGA-06-6699-01 5 175540863 175540863 G A FAM153B Missense_Mutation p.E278K 0.40 deleterious_low_confidence(0.02) possibly_damaging(0.828) TCGA-06-6699-01 6 109787239 109787239 C T ZBTB24 Missense_Mutation p.V637M 0.46 deleterious(0) possibly_damaging(0.848) TCGA-06-6699-01 6 161771139 161771139 C T PARK2 Missense_Mutation p.D464N 0.48 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-06-6699-01 6 43403588 43403588 C T ABCC10 Missense_Mutation p.R570W 0.43 deleterious(0) probably_damaging(0.991) TCGA-06-6699-01 6 50696975 50696975 C T TFAP2D Missense_Mutation p.A278V 0.13 deleterious(0.01) probably_damaging(0.947) TCGA-06-6699-01 7 102257187 102257187 G A RASA4 5'UTR 0.12 TCGA-06-6699-01 7 103032068 103032068 C T SLC26A5 Splice_Site p.X411_splice 0.25 TCGA-06-6699-01 7 108524200 108524200 C T C7orf66 Missense_Mutation p.R71H 0.28 tolerated_low_confidence(0.1) benign(0.019) TCGA-06-6699-01 7 156518202 156518202 G T LMBR1 Missense_Mutation p.S362Y 0.28 deleterious(0) probably_damaging(0.958) TCGA-06-6699-01 7 157475460 157475460 C T PTPRN2 Missense_Mutation p.G653E 0.23 deleterious(0) possibly_damaging(0.717) TCGA-06-6699-01 7 73010591 73010591 C A MLXIPL Silent p.R650R 0.23 TCGA-06-6699-01 7 83047753 83047753 C T SEMA3E Missense_Mutation p.G168D 0.08 deleterious(0) probably_damaging(1) TCGA-06-6699-01 8 10396129 10396129 C T PRSS55 Silent p.I295I 0.42 TCGA-06-6699-01 8 125131850 125131850 G A FER1L6 Missense_Mutation p.R1798H 0.45 deleterious(0) probably_damaging(0.991) TCGA-06-6699-01 8 133879248 133879248 G A TG Translation_Start_Site p.M1? 0.40 deleterious(0.03) probably_damaging(0.961) TCGA-06-6699-01 8 68396059 68396059 G A CPA6 Missense_Mutation p.S261L 0.36 tolerated(0.06) benign(0.152) TCGA-06-6699-01 9 96860365 96860365 C A PTPDC1 Missense_Mutation p.T504K 0.36 tolerated(0.14) possibly_damaging(0.735) TCGA-06-6699-01 X 12516825 12516825 C T FRMPD4 Missense_Mutation p.P23L 0.30 tolerated(0.21) benign(0.12) TCGA-06-6699-01 X 129629116 129629116 C T RP1-274L7.1 RNA 0.49 TCGA-06-6699-01 X 18622187 18622187 C A CDKL5 Silent p.T381T 0.35 TCGA-06-6699-01 X 49048188 49048188 G A SYP Silent p.V216V 0.53 TCGA-06-6699-01 X 49112252 49112252 G A FOXP3 Missense_Mutation p.A220V 0.41 tolerated(0.26) benign(0.003) TCGA-06-6699-01 X 54777784 54777784 C T ITIH6 Missense_Mutation p.A1128T 0.44 deleterious(0.05) benign(0.125) TCGA-06-6699-01 X 69825267 69825267 G T TEX11 Nonsense_Mutation p.S699* 0.47 TCGA-06-6700-01 11 46439460 46439461 - A AMBRA1 Intron 0.29 TCGA-06-6700-01 11 59211010 59211010 C T OR5A1 Silent p.Y123Y 0.24 TCGA-06-6700-01 11 59564776 59564776 G T STX3 Silent p.V269V 0.13 TCGA-06-6700-01 11 62652817 62652817 G T SLC3A2 Missense_Mutation p.W431C 0.24 deleterious(0.01) probably_damaging(1) TCGA-06-6700-01 11 7949287 7949287 C T OR10A6 Missense_Mutation p.R308Q 0.22 tolerated(0.07) benign(0.002) TCGA-06-6700-01 12 106857398 106857398 G A POLR3B Missense_Mutation p.G905S 0.13 deleterious(0) probably_damaging(1) TCGA-06-6700-01 12 126138636 126138636 C T TMEM132B Missense_Mutation p.P873S 0.28 deleterious(0) probably_damaging(0.999) TCGA-06-6700-01 12 132514624 132514624 A G EP400 Missense_Mutation p.D1892G 0.22 unknown(0) TCGA-06-6700-01 12 56120552 56120552 G A CD63 Missense_Mutation p.R120W 0.22 deleterious(0.05) possibly_damaging(0.773) TCGA-06-6700-01 12 8813465 8813465 G A MFAP5 Nonsense_Mutation p.R30* 0.23 TCGA-06-6700-01 13 100915068 100915068 C T PCCA Missense_Mutation p.R268C 0.20 deleterious(0) probably_damaging(1) TCGA-06-6700-01 13 114009782 114009782 G A GRTP1 Missense_Mutation p.R66W 0.12 deleterious(0) probably_damaging(1) TCGA-06-6700-01 14 106993844 106993844 G A IGHV3-48 Silent p.D107D 0.22 TCGA-06-6700-01 14 73959293 73959293 C T HEATR4 Intron 0.11 TCGA-06-6700-01 14 94103593 94103593 C T UNC79 Silent p.N1778N 0.07 TCGA-06-6700-01 15 101971636 101971636 C T PCSK6 Silent p.S181S 0.20 TCGA-06-6700-01 15 27193304 27193304 G A GABRA5 Missense_Mutation p.G438D 0.25 deleterious(0.03) probably_damaging(1) TCGA-06-6700-01 16 1308390 1308390 G A TPSD1 3'UTR 0.14 TCGA-06-6700-01 16 67917522 67917522 G A EDC4 Missense_Mutation p.D1301N 0.17 tolerated(0.17) probably_damaging(0.982) TCGA-06-6700-01 16 70172800 70172800 A G PDPR Splice_Site p.X397_splice 0.04 TCGA-06-6700-01 17 1631464 1631464 G A WDR81 Missense_Mutation p.V1071I 0.19 tolerated(0.55) benign(0.146) TCGA-06-6700-01 17 31322667 31322667 G A SPACA3 Missense_Mutation p.R92H 0.11 deleterious(0.02) possibly_damaging(0.822) TCGA-06-6700-01 17 34171683 34171683 C A TAF15 Silent p.G460G 0.24 TCGA-06-6700-01 17 45490276 45490276 G A EFCAB13 Missense_Mutation p.V806I 0.13 tolerated(1) benign(0.001) TCGA-06-6700-01 17 49071128 49071128 G A SPAG9 Missense_Mutation p.P799S 0.06 deleterious(0.01) benign(0.411) TCGA-06-6700-01 17 8784974 8784974 G A PIK3R5 Silent p.N785N 0.11 TCGA-06-6700-01 18 30825371 30825371 G A CCDC178 Silent p.Y477Y 0.19 TCGA-06-6700-01 18 35145598 35145598 T A CELF4 Missense_Mutation p.I3L 0.16 tolerated_low_confidence(0.15) possibly_damaging(0.801) TCGA-06-6700-01 18 61306946 61306946 G A SERPINB4 Silent p.N178N 0.17 TCGA-06-6700-01 19 21512030 21512030 G T ZNF708 5'UTR 0.23 TCGA-06-6700-01 19 41630793 41630793 C T CYP2F1 Silent p.R378R 0.20 TCGA-06-6700-01 19 50473619 50473619 T C SIGLEC16 RNA 0.04 TCGA-06-6700-01 19 53995185 53995185 G T ZNF813 Missense_Mutation p.A567S 0.11 tolerated(0.37) benign(0.081) TCGA-06-6700-01 19 56515184 56515184 C A NLRP5 Missense_Mutation p.D55E 0.19 tolerated(1) benign(0.078) TCGA-06-6700-01 1 154062057 154062057 C T NUP210L Missense_Mutation p.R734Q 0.22 tolerated(0.21) benign(0.023) TCGA-06-6700-01 1 159889092 159889092 A G TAGLN2 Missense_Mutation p.F144L 0.20 tolerated(0.08) benign(0.015) TCGA-06-6700-01 1 160811483 160811483 C G CD244 Missense_Mutation p.L90F 0.40 tolerated(0.37) benign(0.077) TCGA-06-6700-01 1 16268633 16268633 T C ZBTB17 Missense_Mutation p.Q748R 0.20 deleterious(0) possibly_damaging(0.838) TCGA-06-6700-01 1 186106708 186106708 G A HMCN1 Missense_Mutation p.R4554H 0.12 probably_damaging(0.996) TCGA-06-6700-01 1 201196177 201196177 C T IGFN1 Missense_Mutation p.R3652C 0.18 benign(0.119) TCGA-06-6700-01 1 247712512 247712512 C T GCSAML Nonsense_Mutation p.R7* 0.21 TCGA-06-6700-01 1 248458330 248458330 C T OR2T12 Missense_Mutation p.R184H 0.20 tolerated(0.13) benign(0.177) TCGA-06-6700-01 1 85595746 85595746 G A WDR63 Missense_Mutation p.R828H 0.20 tolerated(0.14) possibly_damaging(0.548) TCGA-06-6700-01 20 56139269 56139269 G A PCK1 Missense_Mutation p.A336T 0.21 deleterious(0) probably_damaging(0.987) TCGA-06-6700-01 2 130948160 130948160 G A MZT2B Silent p.G146G 0.17 TCGA-06-6700-01 3 15712040 15712040 C T ANKRD28 Missense_Mutation p.A967T 0.16 deleterious(0.04) possibly_damaging(0.678) TCGA-06-6700-01 3 16343240 16343240 A G OXNAD1 Silent p.G180G 0.27 TCGA-06-6700-01 3 40529457 40529457 G A ZNF619 Missense_Mutation p.G526R 0.24 tolerated_low_confidence(0.07) benign(0.302) TCGA-06-6700-01 3 51430156 51430156 G A RBM15B Silent p.G442G 0.05 TCGA-06-6700-01 4 115544445 115544445 G C UGT8 Missense_Mutation p.V137L 0.21 deleterious(0.03) probably_damaging(0.936) TCGA-06-6700-01 4 13603360 13603360 C T BOD1L1 Missense_Mutation p.E1722K 0.18 probably_damaging(0.998) TCGA-06-6700-01 4 183714528 183714528 C T TENM3 Missense_Mutation p.R2235C 0.19 deleterious(0) possibly_damaging(0.876) TCGA-06-6700-01 4 70918791 70918791 A T HTN1 5'UTR 0.19 TCGA-06-6700-01 5 10394249 10394249 G A MARCH6 Nonsense_Mutation p.W274* 0.19 TCGA-06-6700-01 5 149360771 149360771 A G SLC26A2 Missense_Mutation p.I539V 0.23 tolerated(0.13) benign(0.001) TCGA-06-6700-01 6 160828117 160828117 G A SLC22A3 Missense_Mutation p.G193D 0.19 deleterious(0) probably_damaging(1) TCGA-06-6700-01 6 31746760 31746760 T C VARS Missense_Mutation p.E1237G 0.28 tolerated(0.05) benign(0.014) TCGA-06-6700-01 6 43269393 43269393 C T SLC22A7 Missense_Mutation p.R342W 0.14 deleterious(0.01) probably_damaging(0.952) TCGA-06-6700-01 6 55264168 55264168 A T GFRAL Silent p.G350G 0.20 TCGA-06-6700-01 6 76731930 76731930 G A IMPG1 Missense_Mutation p.A190V 0.19 tolerated(0.23) benign(0.009) TCGA-06-6700-01 7 134222353 134222353 C G AKR1B10 Silent p.S227S 0.05 TCGA-06-6700-01 7 143097029 143097029 C T EPHA1 Missense_Mutation p.A184T 0.18 deleterious(0) probably_damaging(0.999) TCGA-06-6700-01 7 158447341 158447341 C A NCAPG2 Missense_Mutation p.D898Y 0.14 deleterious(0) possibly_damaging(0.867) TCGA-06-6700-01 7 82595087 82595087 T C PCLO Silent p.T1339T 0.20 TCGA-06-6700-01 X 31089936 31089936 G A FTHL17 Silent p.D45D 0.42 TCGA-06-6700-01 X 89177268 89177268 G A TGIF2LX Missense_Mutation p.V62I 0.50 tolerated(0.14) probably_damaging(0.939) TCGA-06-6701-01 10 124813243 124813243 T C ACADSB Silent p.L421L 0.39 TCGA-06-6701-01 10 50955213 50955213 C G OGDHL Missense_Mutation p.E343D 0.47 tolerated(0.27) benign(0.013) TCGA-06-6701-01 10 97607463 97607463 G A ENTPD1 Silent p.G370G 0.07 TCGA-06-6701-01 11 18369162 18369162 G - GTF2H1 Frame_Shift_Del p.A289Lfs*7 0.30 TCGA-06-6701-01 11 46750291 46750291 T C F2 Missense_Mutation p.L459P 0.10 deleterious(0) probably_damaging(0.998) TCGA-06-6701-01 12 100551087 100551087 C G AC010203.1 RNA 0.42 TCGA-06-6701-01 12 49391285 49391285 C T DDN Silent p.T458T 0.20 TCGA-06-6701-01 12 85411285 85411285 T A TSPAN19 Missense_Mutation p.T182S 0.35 tolerated(0.55) benign(0.191) TCGA-06-6701-01 13 38320377 38320377 G A TRPC4 Silent p.N198N 0.21 TCGA-06-6701-01 14 23524268 23524268 C T CDH24 Missense_Mutation p.G166R 0.40 deleterious(0) probably_damaging(1) TCGA-06-6701-01 15 40594334 40594334 C T PLCB2 Intron 0.41 TCGA-06-6701-01 15 90610834 90610834 C T ZNF710 Silent p.A155A 0.36 TCGA-06-6701-01 16 1842222 1842222 G A IGFALS Missense_Mutation p.T104M 0.10 deleterious(0.01) possibly_damaging(0.737) TCGA-06-6701-01 16 703624 703624 T G WDR90 Missense_Mutation p.C445G 0.09 deleterious(0.02) probably_damaging(0.991) TCGA-06-6701-01 17 26851529 26851529 C T FOXN1 Silent p.A44A 0.10 TCGA-06-6701-01 17 27939701 27939701 G A ANKRD13B Silent p.A481A 0.36 TCGA-06-6701-01 17 67132163 67132163 C A ABCA6 Intron 0.31 TCGA-06-6701-01 17 7577096 7577096 T G TP53 Missense_Mutation p.D281A 0.85 deleterious(0) probably_damaging(0.988) TCGA-06-6701-01 17 7577097 7577097 C G TP53 Missense_Mutation p.D281H 0.85 tolerated(0.07) probably_damaging(0.998) TCGA-06-6701-01 18 77794598 77794598 C T RBFA Missense_Mutation p.H35Y 0.33 deleterious(0.02) possibly_damaging(0.869) TCGA-06-6701-01 19 12977473 12977473 C T MAST1 Missense_Mutation p.S679L 0.12 deleterious(0.01) benign(0.075) TCGA-06-6701-01 19 15734860 15734860 G A CYP4F8 RNA 0.22 TCGA-06-6701-01 19 49867855 49867855 C T DKKL1 Silent p.P9P 0.23 TCGA-06-6701-01 19 54822631 54822631 A G LILRA5 Intron 0.37 TCGA-06-6701-01 1 109737164 109737164 C T KIAA1324 Missense_Mutation p.S690F 0.43 deleterious(0) probably_damaging(0.956) TCGA-06-6701-01 1 46159245 46159245 T C TMEM69 Missense_Mutation p.S138P 0.12 deleterious(0) possibly_damaging(0.697) TCGA-06-6701-01 22 39479797 39479797 C T APOBEC3G Missense_Mutation p.R215W 0.52 tolerated(0.09) benign(0.031) TCGA-06-6701-01 2 103067331 103067331 G A IL18RAP Missense_Mutation p.V412I 0.04 tolerated(0.21) benign(0.322) TCGA-06-6701-01 2 131704220 131704220 G A ARHGEF4 Intron 0.21 TCGA-06-6701-01 2 177016279 177016280 - T HOXD3 5'UTR 0.40 TCGA-06-6701-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-06-6701-01 2 64863336 64863336 A T SERTAD2 Missense_Mutation p.S224T 0.38 tolerated(0.48) possibly_damaging(0.622) TCGA-06-6701-01 2 74718780 74718780 A T TTC31 Missense_Mutation p.Q286L 0.32 deleterious(0.04) benign(0.005) TCGA-06-6701-01 3 49735348 49735348 C T RNF123 Missense_Mutation p.R125C 0.42 deleterious(0) probably_damaging(0.998) TCGA-06-6701-01 3 89462354 89462354 T C EPHA3 Missense_Mutation p.V609A 0.44 deleterious(0.01) benign(0.022) TCGA-06-6701-01 4 79429983 79429983 C A FRAS1 Silent p.P3201P 0.28 TCGA-06-6701-01 4 99182637 99182637 A G RAP1GDS1 5'Flank 0.38 TCGA-06-6701-01 5 140769114 140769114 G A PCDHGB4 Missense_Mutation p.D555N 0.22 deleterious(0) probably_damaging(0.951) TCGA-06-6701-01 5 73128199 73128199 C T ARHGEF28 Missense_Mutation p.P354L 0.32 deleterious(0.03) benign(0.027) TCGA-06-6701-01 5 73931841 73931841 T C ENC1 Missense_Mutation p.D157G 0.37 deleterious(0.01) probably_damaging(0.99) TCGA-06-6701-01 5 9629276 9629276 T - TAS2R1 Frame_Shift_Del p.K290Sfs*42 0.09 TCGA-06-6701-01 6 10995345 10995345 C T ELOVL2 Missense_Mutation p.V134I 0.23 tolerated(1) probably_damaging(0.999) TCGA-06-6701-01 8 49832679 49832679 T C SNAI2 Missense_Mutation p.N134S 0.42 tolerated(0.69) benign(0.004) TCGA-06-6701-01 8 77617855 77617855 C T ZFHX4 Missense_Mutation p.S511L 0.23 possibly_damaging(0.504) TCGA-06-6701-01 8 77617897 77617897 C T ZFHX4 Missense_Mutation p.S525F 0.23 possibly_damaging(0.683) TCGA-06-6701-01 9 111936888 111936888 C T EPB41L4B Silent p.R883R 0.08 TCGA-06-6701-01 9 139934426 139934426 G C NPDC1 Silent p.A294A 0.34 TCGA-06-6701-01 X 1413266 1413266 C T CSF2RA Missense_Mutation p.T231M 0.30 deleterious(0) benign(0.154) TCGA-06-6701-01 X 76888787 76888792 ATGATC - ATRX In_Frame_Del p.M1679_I1680del 0.87 TCGA-06-A5U0-01 10 123845282 123845282 G A TACC2 Silent p.R1089R 0.08 TCGA-06-A5U0-01 10 76924429 76924429 C T SAMD8 Missense_Mutation p.A202V 0.12 tolerated(0.29) benign(0.015) TCGA-06-A5U0-01 12 100649960 100649960 G C DEPDC4 Missense_Mutation p.H249D 0.16 tolerated(1) benign(0.002) TCGA-06-A5U0-01 12 106632740 106632740 C A CKAP4 3'UTR 0.44 TCGA-06-A5U0-01 12 132401033 132401033 C T ULK1 Nonsense_Mutation p.R657* 0.32 TCGA-06-A5U0-01 12 51634221 51634221 C T DAZAP2 Silent p.T36T 0.35 TCGA-06-A5U0-01 16 30129422 30129422 C T MAPK3 Silent p.T202T 0.35 TCGA-06-A5U0-01 16 31196434 31196434 A G FUS Missense_Mutation p.N233S 0.30 tolerated(0.49) unknown(0) TCGA-06-A5U0-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.80 TCGA-06-A5U0-01 17 7578418 7578419 - CC TP53 Frame_Shift_Ins p.E171Gfs*4 0.26 TCGA-06-A5U0-01 19 10088082 10088082 G A COL5A3 Missense_Mutation p.P1065S 0.52 possibly_damaging(0.512) TCGA-06-A5U0-01 19 20044106 20044106 A G ZNF93 Missense_Mutation p.I114M 0.52 deleterious(0.04) benign(0.37) TCGA-06-A5U0-01 19 33355540 33355540 G A SLC7A9 Missense_Mutation p.T77M 0.44 tolerated(0.45) possibly_damaging(0.74) TCGA-06-A5U0-01 19 56735195 56735195 G A ZSCAN5A Silent p.V131V 0.11 TCGA-06-A5U0-01 19 6501304 6501304 C T TUBB4A Missense_Mutation p.V91M 0.17 deleterious_low_confidence(0) possibly_damaging(0.823) TCGA-06-A5U0-01 1 115256530 115256530 G T NRAS Missense_Mutation p.Q61K 0.63 deleterious(0.01) benign(0.045) TCGA-06-A5U0-01 1 226252155 226252155 G A H3F3A Missense_Mutation p.G35R 0.24 deleterious_low_confidence(0.02) benign(0.013) TCGA-06-A5U0-01 1 237167651 237167651 C T MT1HL1 Missense_Mutation p.A8T 0.60 tolerated(0.57) unknown(0) TCGA-06-A5U0-01 1 27332816 27332816 G A FAM46B Silent p.R299R 0.62 TCGA-06-A5U0-01 1 51005282 51005282 C T FAF1 Missense_Mutation p.V463M 0.61 deleterious(0.05) probably_damaging(0.993) TCGA-06-A5U0-01 20 58443602 58443602 C T SYCP2 Missense_Mutation p.R1285H 0.08 tolerated(0.37) possibly_damaging(0.804) TCGA-06-A5U0-01 21 11039177 11039177 G A BAGE2 RNA 0.08 TCGA-06-A5U0-01 22 26701985 26701985 C T SEZ6L Silent p.R463R 0.38 TCGA-06-A5U0-01 22 35802548 35802548 G A MCM5 Silent p.S142S 0.52 TCGA-06-A5U0-01 2 196544941 196544942 - A SLC39A10 Frame_Shift_Ins p.Y62Ifs*4 0.31 TCGA-06-A5U0-01 3 126741046 126741046 G A PLXNA1 Missense_Mutation p.R1386H 0.33 deleterious(0) probably_damaging(0.956) TCGA-06-A5U0-01 3 186760991 186760991 G A ST6GAL1 Missense_Mutation p.G167D 0.50 benign(0.03) TCGA-06-A5U0-01 3 194062129 194062129 C T CPN2 Missense_Mutation p.V435M 0.43 deleterious(0.04) benign(0.098) TCGA-06-A5U0-01 3 52819193 52819193 G A ITIH1 Missense_Mutation p.R514H 0.39 tolerated(0.06) benign(0.035) TCGA-06-A5U0-01 5 107216745 107216745 C T FBXL17 Missense_Mutation p.C653Y 0.91 deleterious(0) benign(0.314) TCGA-06-A5U0-01 5 1443348 1443348 C T SLC6A3 5'UTR 0.61 TCGA-06-A5U0-01 6 21594942 21594942 C T SOX4 Silent p.I59I 0.42 TCGA-06-A5U0-01 7 100607857 100607857 C T MUC3A Silent p.N668N 0.24 TCGA-06-A5U0-01 7 133041316 133041316 G A EXOC4 Silent p.E332E 0.28 TCGA-06-A5U0-01 7 21920360 21920360 G C DNAH11 Missense_Mutation p.S4086T 0.36 benign(0.018) TCGA-06-A5U0-01 7 29535575 29535575 C T CHN2 Missense_Mutation p.T221M 0.41 deleterious(0) probably_damaging(1) TCGA-06-A5U0-01 7 38725120 38725120 G A FAM183B 3'UTR 0.55 TCGA-06-A5U0-01 7 72436368 72436368 G T TRIM74 Silent p.I107I 0.18 TCGA-06-A5U0-01 8 133906073 133906073 A G TG Missense_Mutation p.N967S 0.19 tolerated(0.68) benign(0) TCGA-06-A5U0-01 9 100857304 100857304 G A TRIM14 Missense_Mutation p.T182M 0.08 tolerated(0.12) benign(0.032) TCGA-06-A5U0-01 X 111003107 111003107 G A ALG13 Nonsense_Mutation p.W1098* 0.49 TCGA-06-A5U0-01 X 152990896 152990896 G A ABCD1 Missense_Mutation p.G59R 0.33 tolerated(0.43) benign(0.002) TCGA-06-A5U0-01 X 17819743 17819743 C T RAI2 Missense_Mutation p.V130I 0.46 tolerated(0.09) possibly_damaging(0.661) TCGA-06-A5U0-01 X 49105110 49105110 G A CCDC22 Missense_Mutation p.R449Q 0.62 tolerated(0.14) benign(0.313) TCGA-06-A5U0-01 X 76814303 76814306 ATAA - ATRX Frame_Shift_Del p.F2113Sfs*9 0.58 TCGA-06-A5U1-01 10 50854628 50854628 G T CHAT Nonsense_Mutation p.E397* 0.28 TCGA-06-A5U1-01 11 107501248 107501248 T C ELMOD1 Silent p.C41C 0.50 TCGA-06-A5U1-01 11 31804964 31804964 G C ELP4 Missense_Mutation p.L389F 0.31 tolerated(0.06) probably_damaging(0.99) TCGA-06-A5U1-01 11 64599069 64599069 G A CDC42BPG Missense_Mutation p.A1071V 0.37 deleterious(0.02) benign(0.003) TCGA-06-A5U1-01 11 824068 824068 G T PNPLA2 Silent p.L330L 0.38 TCGA-06-A5U1-01 12 100452275 100452275 T C UHRF1BP1L Missense_Mutation p.H927R 0.35 tolerated(0.29) benign(0.048) TCGA-06-A5U1-01 12 18443844 18443844 A T PIK3C2G Missense_Mutation p.S273C 0.39 deleterious(0) possibly_damaging(0.759) TCGA-06-A5U1-01 12 43846096 43846096 C G ADAMTS20 Missense_Mutation p.C687S 0.27 deleterious(0) probably_damaging(0.944) TCGA-06-A5U1-01 12 56915773 56915773 C T RBMS2 5'UTR 0.43 TCGA-06-A5U1-01 12 7064388 7064388 G A PTPN6 Silent p.T197T 0.31 TCGA-06-A5U1-01 12 80672872 80672872 G A OTOGL Missense_Mutation p.G943R 0.32 deleterious(0) probably_damaging(1) TCGA-06-A5U1-01 12 8693403 8693403 C T CLEC4E 5'UTR 0.45 TCGA-06-A5U1-01 13 25453386 25453386 C T RNF17 Missense_Mutation p.P1612L 0.34 tolerated(0.22) benign(0.018) TCGA-06-A5U1-01 13 40261714 40261714 G A COG6 Missense_Mutation p.G288E 0.35 deleterious(0) probably_damaging(0.999) TCGA-06-A5U1-01 14 101491392 101491392 G A MIR380 RNA 0.23 TCGA-06-A5U1-01 14 106733257 106733257 C T IGHV1-24 Missense_Mutation p.A80T 0.26 tolerated(0.12) benign(0.103) TCGA-06-A5U1-01 14 60212890 60212890 T A RTN1 Missense_Mutation p.D184V 0.18 deleterious(0) possibly_damaging(0.901) TCGA-06-A5U1-01 14 68292193 68292193 C A RAD51B Missense_Mutation p.L33I 0.52 deleterious(0.02) possibly_damaging(0.54) TCGA-06-A5U1-01 15 50331001 50331001 A C ATP8B4 Missense_Mutation p.V109G 0.43 deleterious(0) probably_damaging(0.999) TCGA-06-A5U1-01 15 74427150 74427150 C A ISLR2 Missense_Mutation p.D685E 0.12 tolerated(0.66) probably_damaging(0.978) TCGA-06-A5U1-01 15 75015208 75015208 T G CYP1A1 Silent p.R77R 0.12 TCGA-06-A5U1-01 15 82335534 82335534 G A MEX3B Silent p.T559T 0.37 TCGA-06-A5U1-01 16 31384696 31384696 C T ITGAX Silent p.Y831Y 0.32 TCGA-06-A5U1-01 16 48130680 48130680 G A ABCC12 Silent p.L1058L 0.24 TCGA-06-A5U1-01 16 64984692 64984692 G A CDH11 Silent p.L624L 0.29 TCGA-06-A5U1-01 16 75575265 75575265 G A TMEM231 Silent p.Y280Y 0.30 TCGA-06-A5U1-01 16 89703774 89703774 G A DPEP1 Missense_Mutation p.V252I 0.26 tolerated(0.88) benign(0.074) TCGA-06-A5U1-01 17 39671760 39671760 G A KRT15 Missense_Mutation p.A404V 0.28 deleterious(0) possibly_damaging(0.902) TCGA-06-A5U1-01 17 62547797 62547797 G C SMURF2 Missense_Mutation p.R592G 0.16 deleterious(0.02) probably_damaging(0.962) TCGA-06-A5U1-01 17 63679 63679 G A RPH3AL Silent p.D304D 0.32 TCGA-06-A5U1-01 17 78332276 78332276 A G RNF213 Missense_Mutation p.E3684G 0.47 benign(0.009) TCGA-06-A5U1-01 17 78395635 78395635 A G ENDOV Missense_Mutation p.Y79C 0.38 deleterious(0) possibly_damaging(0.809) TCGA-06-A5U1-01 18 3079268 3079268 G A MYOM1 Silent p.N1519N 0.40 TCGA-06-A5U1-01 18 63477086 63477086 G A CDH7 Silent p.T119T 0.35 TCGA-06-A5U1-01 19 12361097 12361097 T C ZNF44 Silent p.R40R 0.34 TCGA-06-A5U1-01 19 3750577 3750577 C T TJP3 Intron 0.39 TCGA-06-A5U1-01 19 40541778 40541778 C T ZNF780B Missense_Mutation p.E330K 0.33 deleterious(0.04) possibly_damaging(0.857) TCGA-06-A5U1-01 19 43528981 43528981 G A PSG11 Nonsense_Mutation p.R98* 0.28 TCGA-06-A5U1-01 19 50365849 50365849 C T PNKP Silent p.P294P 0.21 TCGA-06-A5U1-01 19 7809028 7809028 C T CD209 Silent p.T326T 0.21 TCGA-06-A5U1-01 1 152749036 152749036 G T LCE1F Silent p.G63G 0.24 TCGA-06-A5U1-01 1 158326629 158326629 G A CD1E Silent p.S370S 0.31 TCGA-06-A5U1-01 1 17277467 17277467 G A CROCC Silent p.R952R 0.39 TCGA-06-A5U1-01 1 215955433 215955433 G T USH2A Nonsense_Mutation p.S3564* 0.32 TCGA-06-A5U1-01 20 10023888 10023888 A G ANKEF1 Silent p.R155R 0.08 TCGA-06-A5U1-01 20 33439059 33439059 G A GGT7 Missense_Mutation p.A567V 0.15 tolerated(0.13) benign(0.084) TCGA-06-A5U1-01 20 39990517 39990517 A G EMILIN3 Silent p.T564T 0.25 TCGA-06-A5U1-01 20 43057055 43057055 G A HNF4A Missense_Mutation p.V404I 0.35 tolerated_low_confidence(0.21) probably_damaging(0.987) TCGA-06-A5U1-01 20 61386132 61386132 G A NTSR1 Silent p.A270A 0.29 TCGA-06-A5U1-01 21 43857670 43857670 C T UBASH3A Missense_Mutation p.T489M 0.31 deleterious(0) probably_damaging(0.997) TCGA-06-A5U1-01 22 20073388 20073388 G A DGCR8 5'UTR 0.41 TCGA-06-A5U1-01 2 101611897 101611897 G A NPAS2 Silent p.Q776Q 0.33 TCGA-06-A5U1-01 2 127828153 127828153 C T BIN1 Silent p.R97R 0.36 TCGA-06-A5U1-01 2 135076222 135076222 G T MGAT5 Missense_Mutation p.W162L 0.16 deleterious(0.01) possibly_damaging(0.49) TCGA-06-A5U1-01 2 18112624 18112624 T C KCNS3 Missense_Mutation p.C117R 0.38 deleterious(0.04) benign(0.132) TCGA-06-A5U1-01 2 21250906 21250906 C A APOB Nonsense_Mutation p.E621* 0.25 TCGA-06-A5U1-01 3 11064090 11064090 C T SLC6A1 Missense_Mutation p.T217M 0.38 deleterious(0) probably_damaging(0.999) TCGA-06-A5U1-01 3 118905573 118905573 G C UPK1B 5'UTR 0.10 TCGA-06-A5U1-01 3 14561996 14561996 G A GRIP2 RNA 0.34 TCGA-06-A5U1-01 3 172835035 172835038 CACT - SPATA16 Frame_Shift_Del p.S162Yfs*16 0.28 TCGA-06-A5U1-01 3 57132117 57132117 T G IL17RD Silent p.S538S 0.35 TCGA-06-A5U1-01 4 166964485 166964485 G T TLL1 Missense_Mutation p.D480Y 0.29 deleterious(0.04) possibly_damaging(0.781) TCGA-06-A5U1-01 4 166964491 166964491 T A TLL1 Missense_Mutation p.Y482N 0.28 deleterious(0) probably_damaging(0.996) TCGA-06-A5U1-01 4 52863940 52863940 C T LRRC66 Nonsense_Mutation p.W277* 0.31 TCGA-06-A5U1-01 4 55161370 55161370 T A PDGFRA Silent p.I1067I 0.29 TCGA-06-A5U1-01 4 77661451 77661451 G A SHROOM3 Missense_Mutation p.A709T 0.33 tolerated(0.75) benign(0.017) TCGA-06-A5U1-01 5 1064277 1064277 C T SLC12A7 Missense_Mutation p.G843E 0.31 tolerated(1) benign(0) TCGA-06-A5U1-01 5 140011335 140011335 T G CD14 3'UTR 0.37 TCGA-06-A5U1-01 5 141017811 141017811 G A RELL2 Missense_Mutation p.D7N 0.32 tolerated_low_confidence(0.05) benign(0.179) TCGA-06-A5U1-01 5 150887160 150887160 C T FAT2 Silent p.E4024E 0.42 TCGA-06-A5U1-01 5 161113002 161113002 T C GABRA6 Missense_Mutation p.S3P 0.31 tolerated_low_confidence(0.3) benign(0.077) TCGA-06-A5U1-01 5 167882441 167882441 G A WWC1 Silent p.P913P 0.12 TCGA-06-A5U1-01 6 150001084 150001084 A C LATS1 Silent p.G840G 0.39 TCGA-06-A5U1-01 6 29640985 29640985 C T ZFP57 Silent p.Q301Q 0.35 TCGA-06-A5U1-01 6 56434795 56434795 A G DST Silent p.T1956T 0.36 TCGA-06-A5U1-01 7 133991462 133991462 G T SLC35B4 Missense_Mutation p.L86I 0.09 deleterious(0.01) benign(0.143) TCGA-06-A5U1-01 7 141756708 141756708 C T MGAM Missense_Mutation p.P1220L 0.26 deleterious(0) probably_damaging(0.984) TCGA-06-A5U1-01 7 75864439 75864439 G A SRRM3 Missense_Mutation p.A19T 0.27 deleterious(0) unknown(0) TCGA-06-A5U1-01 7 86416431 86416431 G A GRM3 Silent p.T441T 0.23 TCGA-06-A5U1-01 7 98452885 98452885 C T TMEM130 Missense_Mutation p.V261M 0.23 tolerated(0.24) benign(0.177) TCGA-06-A5U1-01 8 139380188 139380188 C T FAM135B Silent p.E13E 0.26 TCGA-06-A5U1-01 8 24772080 24772080 C T NEFM Silent p.R258R 0.38 TCGA-06-A5U1-01 8 57224796 57224796 C T SDR16C5 Missense_Mutation p.V129I 0.26 tolerated(0.06) probably_damaging(0.978) TCGA-06-A5U1-01 8 66639113 66639113 C A PDE7A Missense_Mutation p.S306I 0.34 tolerated(0.19) benign(0.185) TCGA-06-A5U1-01 8 66639114 66639114 T A PDE7A Missense_Mutation p.S306C 0.33 tolerated(0.06) benign(0.004) TCGA-06-A5U1-01 9 137321072 137321072 C T RXRA Silent p.G343G 0.37 TCGA-06-A5U1-01 X 100601630 100601630 G C TIMM8A Missense_Mutation p.P51A 0.30 deleterious(0.01) benign(0.394) TCGA-06-A5U1-01 X 1321372 1321372 G A CRLF2 Missense_Mutation p.S128L 0.37 tolerated(0.29) benign(0.005) TCGA-06-A5U1-01 X 154090023 154090023 G A F8 Silent p.L2231L 0.28 TCGA-06-A5U1-01 X 2999033 2999033 G A ARSF Missense_Mutation p.G129R 0.16 deleterious(0) probably_damaging(0.999) TCGA-06-A5U1-01 X 35937874 35937874 C T CXorf22 5'UTR 0.20 TCGA-06-A5U1-01 X 48054758 48054758 C A SSX5 Missense_Mutation p.V13F 0.25 tolerated_low_confidence(0.08) benign(0.006) TCGA-06-A5U1-01 X 48547247 48547247 G A WAS Missense_Mutation p.R377H 0.47 deleterious(0.02) unknown(0) TCGA-06-A5U1-01 X 49040290 49040290 C A PRICKLE3 Missense_Mutation p.C70F 0.14 tolerated(0.17) benign(0.004) TCGA-06-A5U1-01 X 54020271 54020271 G A PHF8 Silent p.A499A 0.34 TCGA-06-A6S0-01 10 50835781 50835781 C A CHAT Missense_Mutation p.T354K 0.77 deleterious(0.01) probably_damaging(0.973) TCGA-06-A6S0-01 10 8100767 8100767 C T GATA3 Silent p.F247F 0.09 TCGA-06-A6S0-01 11 55798847 55798847 G A OR5AS1 Missense_Mutation p.R318H 0.31 deleterious(0.01) benign(0) TCGA-06-A6S0-01 11 62766463 62766463 C T SLC22A8 Missense_Mutation p.A231T 0.26 tolerated(0.18) possibly_damaging(0.461) TCGA-06-A6S0-01 11 74913975 74913975 C T SLCO2B1 Missense_Mutation p.A598V 0.49 deleterious(0) probably_damaging(0.968) TCGA-06-A6S0-01 12 48376326 48376326 C T COL2A1 Missense_Mutation p.E754K 0.54 probably_damaging(0.996) TCGA-06-A6S0-01 12 52139718 52139718 G A SCN8A Missense_Mutation p.G677D 0.45 tolerated(0.53) benign(0.004) TCGA-06-A6S0-01 12 53012151 53012151 C T KRT73 Missense_Mutation p.G53D 0.43 deleterious(0) possibly_damaging(0.594) TCGA-06-A6S0-01 12 7980193 7980193 C A SLC2A14 Missense_Mutation p.K277N 0.41 tolerated(0.06) benign(0.442) TCGA-06-A6S0-01 13 114514730 114514730 G A TMEM255B Missense_Mutation p.A279T 0.36 tolerated(0.31) benign(0.001) TCGA-06-A6S0-01 13 25466929 25466929 C T CENPJ Missense_Mutation p.R1023H 0.31 deleterious(0) probably_damaging(0.999) TCGA-06-A6S0-01 14 107131094 107131094 G A IGHV3-66 Missense_Mutation p.T96M 0.35 tolerated_low_confidence(0.19) benign(0.155) TCGA-06-A6S0-01 14 70418996 70418996 G A SMOC1 Missense_Mutation p.V81M 0.33 tolerated(0.07) benign(0.006) TCGA-06-A6S0-01 14 92406929 92406929 C T FBLN5 Missense_Mutation p.R35H 0.46 deleterious(0.05) possibly_damaging(0.818) TCGA-06-A6S0-01 14 94046596 94046596 A - UNC79 Frame_Shift_Del p.S669Pfs*33 0.30 TCGA-06-A6S0-01 15 20658646 20658646 G A HERC2P3 RNA 0.19 TCGA-06-A6S0-01 15 38805030 38805030 G A RASGRP1 Missense_Mutation p.P268L 0.12 deleterious(0) probably_damaging(0.961) TCGA-06-A6S0-01 15 48764767 48764767 A C FBN1 Silent p.A1439A 0.24 TCGA-06-A6S0-01 15 64966282 64966282 G A ZNF609 Missense_Mutation p.R410H 0.60 deleterious(0) possibly_damaging(0.896) TCGA-06-A6S0-01 15 97326889 97326889 G A SPATA8 Missense_Mutation p.A2T 0.30 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-06-A6S0-01 17 30190423 30190423 C T UTP6 Silent p.E583E 0.35 TCGA-06-A6S0-01 17 42290625 42290625 C A UBTF Missense_Mutation p.R167I 0.06 deleterious(0) possibly_damaging(0.78) TCGA-06-A6S0-01 17 7350881 7350881 C T CHRNB1 Silent p.Y174Y 0.35 TCGA-06-A6S0-01 18 6213167 6213167 A G L3MBTL4 Missense_Mutation p.V321A 0.46 deleterious(0.03) possibly_damaging(0.892) TCGA-06-A6S0-01 18 6898541 6898541 C A ARHGAP28 Intron 0.37 TCGA-06-A6S0-01 19 10398442 10398442 A T ICAM4 Missense_Mutation p.D183V 0.29 deleterious_low_confidence(0) possibly_damaging(0.804) TCGA-06-A6S0-01 19 11759238 11759238 G A ZNF833P RNA 0.54 TCGA-06-A6S0-01 19 1506211 1506211 C T ADAMTSL5 Missense_Mutation p.E407K 0.38 deleterious(0) probably_damaging(1) TCGA-06-A6S0-01 19 15366233 15366233 T G BRD4 Missense_Mutation p.E641A 0.37 benign(0.292) TCGA-06-A6S0-01 19 3752524 3752524 C T APBA3 Silent p.A459A 0.45 TCGA-06-A6S0-01 19 40900392 40900392 G A PRX Silent p.A1289A 0.29 TCGA-06-A6S0-01 19 51919922 51919922 G A SIGLEC10 Missense_Mutation p.A235V 0.18 deleterious(0) benign(0.387) TCGA-06-A6S0-01 19 55045079 55045079 C T KIR3DX1 Nonsense_Mutation p.R67* 0.42 TCGA-06-A6S0-01 1 152324115 152324115 G A FLG2 Silent p.H2049H 0.45 TCGA-06-A6S0-01 1 155282068 155282068 G A FDPS Missense_Mutation p.G121E 0.14 deleterious(0) probably_damaging(0.976) TCGA-06-A6S0-01 1 158819154 158819154 G A MNDA 3'UTR 0.44 TCGA-06-A6S0-01 1 215848629 215848629 G A USH2A Silent p.D4208D 0.36 TCGA-06-A6S0-01 1 67447476 67447476 G A MIER1 Missense_Mutation p.R415H 0.39 deleterious(0.02) possibly_damaging(0.879) TCGA-06-A6S0-01 1 79404873 79404873 T - ELTD1 Frame_Shift_Del p.I133Sfs*4 0.37 TCGA-06-A6S0-01 20 31369221 31369221 G A DNMT3B Splice_Site p.X68_splice 0.48 TCGA-06-A6S0-01 20 57769338 57769338 G A ZNF831 Silent p.R1088R 0.50 TCGA-06-A6S0-01 20 61340827 61340827 C T NTSR1 Missense_Mutation p.R90W 0.52 deleterious(0) probably_damaging(0.983) TCGA-06-A6S0-01 20 61982270 61982270 C T CHRNA4 Missense_Mutation p.V165I 0.25 tolerated(0.25) probably_damaging(0.98) TCGA-06-A6S0-01 22 17072850 17072850 G A CCT8L2 Silent p.S197S 0.47 TCGA-06-A6S0-01 2 1481015 1481015 C T TPO Missense_Mutation p.A326V 0.35 deleterious(0) probably_damaging(1) TCGA-06-A6S0-01 2 152470829 152470829 G A NEB Silent p.D3854D 0.49 TCGA-06-A6S0-01 2 166152332 166152333 AG - SCN2A 5'UTR 0.24 TCGA-06-A6S0-01 2 170100016 170100016 G A LRP2 Silent p.C1149C 0.38 TCGA-06-A6S0-01 2 31754514 31754514 C T AL133247.2 Intron 0.45 TCGA-06-A6S0-01 2 43514045 43514045 A G THADA Splice_Site p.X1722_splice 0.33 TCGA-06-A6S0-01 2 48936098 48936098 C T LHCGR Silent p.G223G 0.40 TCGA-06-A6S0-01 2 90198975 90198975 C T IGKV1D-12 Missense_Mutation p.R46W 0.79 deleterious(0.03) benign(0.116) TCGA-06-A6S0-01 3 123014981 123014981 C T ADCY5 Missense_Mutation p.A1005T 0.30 deleterious(0) benign(0.277) TCGA-06-A6S0-01 3 178928085 178928111 TTGCTGAACCCTATTGGTGTTACTGGA - PIK3CA In_Frame_Del p.L455_G463del 0.20 TCGA-06-A6S0-01 3 44763971 44763971 C A ZNF502 3'UTR 0.40 TCGA-06-A6S0-01 3 54603875 54603875 C T CACNA2D3 Nonsense_Mutation p.R244* 0.59 TCGA-06-A6S0-01 4 87024360 87024360 G A MAPK10 Missense_Mutation p.T135M 0.39 deleterious(0.01) benign(0.035) TCGA-06-A6S0-01 5 122685707 122685707 G A CEP120 Missense_Mutation p.A886V 0.07 deleterious(0) probably_damaging(0.993) TCGA-06-A6S0-01 5 137515402 137515402 C A KIF20A Silent p.G11G 0.33 TCGA-06-A6S0-01 5 13845049 13845049 G C DNAH5 Missense_Mutation p.P1723R 0.50 benign(0.023) TCGA-06-A6S0-01 5 140754275 140754275 C T PCDHGA6 Missense_Mutation p.R209C 0.45 deleterious_low_confidence(0) possibly_damaging(0.773) TCGA-06-A6S0-01 5 141059145 141059145 C T ARAP3 Missense_Mutation p.S222N 0.31 tolerated(0.18) benign(0.004) TCGA-06-A6S0-01 5 59064314 59064314 C T PDE4D Intron 0.39 TCGA-06-A6S0-01 6 25862617 25862617 A G SLC17A3 Silent p.N49N 0.44 TCGA-06-A6S0-01 6 31601293 31601293 G A PRRC2A Missense_Mutation p.R1486H 0.07 unknown(0) TCGA-06-A6S0-01 6 4131043 4131043 C T ECI2 Silent p.K90K 0.43 TCGA-06-A6S0-01 6 49574620 49574620 A G RHAG Silent p.L385L 0.31 TCGA-06-A6S0-01 6 49936507 49936507 C T DEFB113 Silent p.P44P 0.48 TCGA-06-A6S0-01 6 50696990 50696990 C T TFAP2D Missense_Mutation p.A283V 0.46 deleterious(0) probably_damaging(0.999) TCGA-06-A6S0-01 6 50718992 50718992 C A TFAP2D Missense_Mutation p.T365N 0.35 tolerated(0.87) benign(0.02) TCGA-06-A6S0-01 6 55147051 55147051 G A HCRTR2 Silent p.A378A 0.39 TCGA-06-A6S0-01 6 99771341 99771341 G A FAXC Missense_Mutation p.R268W 0.15 deleterious(0.02) benign(0.199) TCGA-06-A6S0-01 7 107412511 107412511 C T SLC26A3 Missense_Mutation p.V684I 0.32 deleterious(0.01) benign(0.119) TCGA-06-A6S0-01 7 107577659 107577659 A G LAMB1 Silent p.T1275T 0.31 TCGA-06-A6S0-01 7 141672669 141672669 C T TAS2R38 Missense_Mutation p.R274H 0.18 tolerated(1) benign(0) TCGA-06-A6S0-01 7 142045534 142045534 C T TRBV4-2 Missense_Mutation p.T21M 0.11 deleterious(0.05) possibly_damaging(0.577) TCGA-06-A6S0-01 7 4272924 4272924 G A SDK1 Silent p.P1955P 0.27 TCGA-06-A6S0-01 7 51095862 51095862 T C COBL Silent p.S977S 0.30 TCGA-06-A6S0-01 7 72664091 72664091 C T GTF2IRD2P1 RNA 0.41 TCGA-06-A6S0-01 8 124988249 124988249 C T FER1L6 Silent p.N265N 0.38 TCGA-06-A6S0-01 8 130760740 130760740 G A GSDMC 3'UTR 0.35 TCGA-06-A6S0-01 8 53568745 53568748 TCTT - RB1CC1 Frame_Shift_Del p.K1214Tfs*16 0.33 TCGA-06-A6S0-01 8 53853241 53853241 G A NPBWR1 Silent p.A258A 0.52 TCGA-06-A6S0-01 8 75233276 75233276 G A JPH1 Missense_Mutation p.R83W 0.36 deleterious(0) probably_damaging(0.965) TCGA-06-A6S0-01 X 224055 224055 G A GTPBP6 Missense_Mutation p.R238C 0.39 tolerated(0.09) benign(0.023) TCGA-06-A6S1-01 10 27459200 27459200 C A MASTL Missense_Mutation p.L438I 0.47 tolerated(0.11) benign(0.371) TCGA-06-A6S1-01 10 50121720 50121720 C T LRRC18 Missense_Mutation p.V161M 0.48 tolerated(0.08) benign(0.002) TCGA-06-A6S1-01 11 102651338 102651338 C A MMP10 5'UTR 0.14 TCGA-06-A6S1-01 11 124180499 124180499 A G OR8D1 Missense_Mutation p.L55P 0.30 deleterious(0) benign(0.113) TCGA-06-A6S1-01 11 31625429 31625429 T G ELP4 Missense_Mutation p.S210A 0.31 tolerated(0.19) benign(0.411) TCGA-06-A6S1-01 11 47463423 47463423 G C RAPSN Silent p.L247L 0.42 TCGA-06-A6S1-01 11 57427181 57427181 G A CLP1 Missense_Mutation p.R78H 0.19 deleterious(0.02) benign(0.002) TCGA-06-A6S1-01 11 6191376 6191376 T A OR52B2 Missense_Mutation p.M61L 0.07 deleterious(0) benign(0.039) TCGA-06-A6S1-01 11 64898430 64898430 C G SYVN1 Missense_Mutation p.G301A 0.29 tolerated(0.45) benign(0.086) TCGA-06-A6S1-01 11 66483364 66483364 G A SPTBN2 Silent p.Y82Y 0.35 TCGA-06-A6S1-01 12 30888116 30888116 G A CAPRIN2 Nonsense_Mutation p.Q199* 0.29 TCGA-06-A6S1-01 15 71535236 71535236 C T THSD4 Missense_Mutation p.A238V 0.11 tolerated(0.54) benign(0) TCGA-06-A6S1-01 15 83788405 83788405 C A TM6SF1 Missense_Mutation p.L124M 0.25 deleterious(0) probably_damaging(0.999) TCGA-06-A6S1-01 16 27760903 27760904 AG - KIAA0556 Splice_Site p.X875_splice 0.12 TCGA-06-A6S1-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.23 deleterious(0.01) possibly_damaging(0.655) TCGA-06-A6S1-01 17 39742592 39742592 G C KRT14 Nonsense_Mutation p.Y165* 0.24 TCGA-06-A6S1-01 17 56291674 56291674 A G MKS1 Missense_Mutation p.I197T 0.08 deleterious(0.01) benign(0.028) TCGA-06-A6S1-01 17 60814474 60814474 G A MARCH10 Missense_Mutation p.S252L 0.33 tolerated(1) benign(0) TCGA-06-A6S1-01 17 77709011 77709011 T C ENPP7 Missense_Mutation p.L190P 0.20 deleterious(0) probably_damaging(0.995) TCGA-06-A6S1-01 19 2252558 2252558 G A JSRP1 Missense_Mutation p.P256S 0.31 tolerated(0.18) probably_damaging(0.932) TCGA-06-A6S1-01 19 42582960 42582960 C G ZNF574 Missense_Mutation p.Q68E 0.15 tolerated(0.46) benign(0.217) TCGA-06-A6S1-01 19 53057583 53057583 C T ZNF808 Nonsense_Mutation p.R472* 0.26 TCGA-06-A6S1-01 1 113252867 113252867 C T PPM1J Missense_Mutation p.R479H 0.23 deleterious(0.01) probably_damaging(0.964) TCGA-06-A6S1-01 1 162749973 162749973 T G DDR2 Missense_Mutation p.D835E 0.11 tolerated(0.26) benign(0.12) TCGA-06-A6S1-01 1 16757875 16757875 C T SPATA21 5'UTR 0.18 TCGA-06-A6S1-01 1 248436813 248436813 G A OR2T33 Missense_Mutation p.L102F 0.06 tolerated(0.8) benign(0.003) TCGA-06-A6S1-01 1 984818 984818 G A AGRN Missense_Mutation p.D1501N 0.27 deleterious(0.05) probably_damaging(0.969) TCGA-06-A6S1-01 20 36775276 36775276 C T TGM2 Silent p.Q234Q 0.39 TCGA-06-A6S1-01 21 39580552 39580552 C T DSCR10 RNA 0.26 TCGA-06-A6S1-01 2 149838035 149838035 G C KIF5C Missense_Mutation p.R510P 0.21 deleterious(0.01) benign(0.18) TCGA-06-A6S1-01 2 215593382 215593382 G T BARD1 3'UTR 0.15 TCGA-06-A6S1-01 2 216226795 216226795 C T FN1 Missense_Mutation p.R2420H 0.15 deleterious(0) probably_damaging(0.91) TCGA-06-A6S1-01 3 105404198 105404198 G A CBLB Missense_Mutation p.P723S 0.26 tolerated_low_confidence(0.17) benign(0.001) TCGA-06-A6S1-01 3 195974350 195974350 G A PCYT1A Missense_Mutation p.T125M 0.06 deleterious(0) probably_damaging(0.999) TCGA-06-A6S1-01 3 3118312 3118312 C A IL5RA Splice_Site p.X332_splice 0.25 TCGA-06-A6S1-01 4 3448002 3448002 G T HGFAC Missense_Mutation p.A446S 0.45 deleterious(0) probably_damaging(1) TCGA-06-A6S1-01 4 68380247 68380247 C T CENPC Missense_Mutation p.R330H 0.39 tolerated(0.16) benign(0.41) TCGA-06-A6S1-01 5 169141157 169141157 C A DOCK2 Missense_Mutation p.S595R 0.07 deleterious(0.01) probably_damaging(0.913) TCGA-06-A6S1-01 6 10876197 10876197 G A GCM2 Missense_Mutation p.A170V 0.12 deleterious(0.04) benign(0.351) TCGA-06-A6S1-01 7 132192549 132192549 G A PLXNA4 Missense_Mutation p.R302C 0.15 deleterious(0.02) possibly_damaging(0.893) TCGA-06-A6S1-01 7 47408674 47408674 G A TNS3 Silent p.D523D 0.05 TCGA-06-A6S1-01 7 55220274 55220274 C T EGFR Missense_Mutation p.R222C 0.06 deleterious(0) probably_damaging(1) TCGA-06-A6S1-01 7 55249022 55249022 G A EGFR Missense_Mutation p.V774M 0.08 deleterious(0) probably_damaging(0.998) TCGA-06-A6S1-01 7 87537080 87537080 C G DBF4 Missense_Mutation p.L543V 0.10 tolerated(0.47) benign(0.02) TCGA-06-A6S1-01 8 131414184 131414184 T A ASAP1 Missense_Mutation p.R2S 0.39 deleterious_low_confidence(0) unknown(0) TCGA-06-A6S1-01 8 1496973 1496973 G A DLGAP2 Silent p.P38P 0.44 TCGA-06-A6S1-01 8 22053041 22053041 G T BMP1 Missense_Mutation p.S569I 0.21 deleterious(0) probably_damaging(0.953) TCGA-06-A6S1-01 8 77764117 77764117 A C ZFHX4 Missense_Mutation p.S1654R 0.38 possibly_damaging(0.504) TCGA-06-A6S1-01 9 15695287 15695287 T C CCDC171 Silent p.L424L 0.35 TCGA-06-A6S1-01 X 107413839 107413839 C A COL4A6 Missense_Mutation p.G1166C 0.15 probably_damaging(1) TCGA-06-A6S1-01 X 110971499 110971499 G A ALG13 Silent p.L778L 0.25 TCGA-06-A6S1-01 X 123197748 123197749 AG - STAG2 Frame_Shift_Del p.D625Yfs*9 0.20 TCGA-06-A6S1-01 X 150349723 150349723 C T GPR50 Silent p.D556D 0.12 TCGA-06-A6S1-01 X 41089808 41089808 G A USP9X Missense_Mutation p.A2512T 0.13 tolerated_low_confidence(0.2) benign(0) TCGA-06-A6S1-01 X 51487037 51487037 A T GSPT2 Silent p.G105G 0.24 TCGA-06-A6S1-01 X 63565002 63565002 T C MTMR8 Missense_Mutation p.Y263C 0.18 deleterious(0) probably_damaging(1) TCGA-06-A6S1-01 X 78010565 78010565 C T LPAR4 Missense_Mutation p.R67C 0.15 tolerated(0.15) probably_damaging(0.93) TCGA-06-A7TK-01 10 102789794 102789794 T C PDZD7 Silent p.S61S 0.35 TCGA-06-A7TK-01 11 117376216 117376216 C T DSCAML1 Missense_Mutation p.S732N 0.11 tolerated(0.1) benign(0.431) TCGA-06-A7TK-01 11 117870158 117870158 G A IL10RA Silent p.T513T 0.39 TCGA-06-A7TK-01 11 118850329 118850329 A G FOXR1 Missense_Mutation p.N188D 0.40 deleterious(0.01) possibly_damaging(0.859) TCGA-06-A7TK-01 11 17519799 17519799 G A USH1C Silent p.D800D 0.17 TCGA-06-A7TK-01 11 49974079 49974079 C T OR4C13 Silent p.N35N 0.39 TCGA-06-A7TK-01 11 55904899 55904899 G C OR8J3 Missense_Mutation p.T99S 0.30 deleterious(0.01) benign(0.41) TCGA-06-A7TK-01 11 57182531 57182531 T C SLC43A3 Missense_Mutation p.Y273C 0.39 tolerated(1) benign(0.002) TCGA-06-A7TK-01 11 61490352 61490352 T C DAGLA Missense_Mutation p.I110T 0.23 deleterious(0.03) benign(0.033) TCGA-06-A7TK-01 12 10217374 10217374 A G CLEC9A Missense_Mutation p.D172G 0.28 tolerated(0.33) benign(0.015) TCGA-06-A7TK-01 12 56559176 56559176 G - SMARCC2 Frame_Shift_Del p.P1022Hfs*39 0.24 TCGA-06-A7TK-01 12 96180806 96180806 C T NTN4 Missense_Mutation p.A166T 0.41 tolerated(0.07) benign(0.013) TCGA-06-A7TK-01 14 105410978 105410978 C T AHNAK2 Missense_Mutation p.V3604M 0.38 benign(0.002) TCGA-06-A7TK-01 15 90152149 90152149 G C TICRR Missense_Mutation p.E946D 0.44 tolerated(0.32) benign(0.007) TCGA-06-A7TK-01 15 91795081 91795081 G A SV2B Missense_Mutation p.A162T 0.31 deleterious(0.02) possibly_damaging(0.775) TCGA-06-A7TK-01 16 3169742 3169742 G A ZNF205 Missense_Mutation p.E361K 0.29 deleterious(0.02) probably_damaging(0.956) TCGA-06-A7TK-01 16 81819719 81819719 C G PLCG2 Missense_Mutation p.T42S 0.39 tolerated(0.06) probably_damaging(0.996) TCGA-06-A7TK-01 17 29162944 29162944 C T ATAD5 Silent p.D615D 0.29 TCGA-06-A7TK-01 17 7722715 7722715 C T DNAH2 Silent p.Y3668Y 0.30 TCGA-06-A7TK-01 18 61154180 61154180 T - SERPINB5 Frame_Shift_Del p.L58Ffs*16 0.24 TCGA-06-A7TK-01 18 74536349 74536349 G T ZNF236 Silent p.L12L 0.40 TCGA-06-A7TK-01 19 14754946 14754946 C T EMR3 Missense_Mutation p.A342T 0.39 deleterious(0.02) benign(0.19) TCGA-06-A7TK-01 19 16631585 16631585 C T C19orf44 3'UTR 0.24 TCGA-06-A7TK-01 19 42793063 42793063 G A CIC Missense_Mutation p.A319T 0.29 benign(0.002) TCGA-06-A7TK-01 19 46832630 46832630 A T HIF3A Missense_Mutation p.E536V 0.11 deleterious(0.01) probably_damaging(0.94) TCGA-06-A7TK-01 19 49842070 49842070 C G CD37 Silent p.T187T 0.23 TCGA-06-A7TK-01 19 56104016 56104016 G A FIZ1 Missense_Mutation p.R431W 0.20 deleterious(0) probably_damaging(0.985) TCGA-06-A7TK-01 19 8996345 8996345 C T MUC16 Missense_Mutation p.D13743N 0.33 probably_damaging(0.999) TCGA-06-A7TK-01 1 110740769 110740769 G A SLC6A17 Silent p.T629T 0.35 TCGA-06-A7TK-01 1 228487166 228487166 G A OBSCN Missense_Mutation p.G4473R 0.09 probably_damaging(1) TCGA-06-A7TK-01 1 36209108 36209110 TCC - CLSPN In_Frame_Del p.E997del 0.28 TCGA-06-A7TK-01 1 75037443 75037443 G A C1orf173 Silent p.D1317D 0.22 TCGA-06-A7TK-01 20 37531311 37531311 G A PPP1R16B Missense_Mutation p.G191D 0.12 deleterious(0.01) probably_damaging(1) TCGA-06-A7TK-01 20 57288507 57288507 G A NPEPL1 Missense_Mutation p.G345S 0.26 deleterious(0) probably_damaging(1) TCGA-06-A7TK-01 21 11049593 11049593 G A BAGE2 RNA 0.06 TCGA-06-A7TK-01 21 47848359 47848359 C T PCNT Silent p.S2515S 0.13 TCGA-06-A7TK-01 22 23404020 23404020 C T RTDR1 Missense_Mutation p.G253S 0.09 deleterious(0.01) possibly_damaging(0.826) TCGA-06-A7TK-01 2 120236446 120236446 G A SCTR Missense_Mutation p.P81L 0.47 tolerated(0.46) benign(0.002) TCGA-06-A7TK-01 2 131984489 131984489 G C POTEE Missense_Mutation p.D302H 0.27 deleterious_low_confidence(0) probably_damaging(0.992) TCGA-06-A7TK-01 2 138722074 138722074 A C HNMT Missense_Mutation p.M5L 0.31 tolerated(0.27) benign(0.004) TCGA-06-A7TK-01 2 179977564 179977564 C A SESTD1 Missense_Mutation p.Q616H 0.37 tolerated(0.11) benign(0.365) TCGA-06-A7TK-01 2 182780265 182780265 C T SSFA2 Missense_Mutation p.T633I 0.07 tolerated(0.12) benign(0.087) TCGA-06-A7TK-01 2 235951748 235951748 G A SH3BP4 Missense_Mutation p.V779M 0.08 tolerated(0.05) benign(0.007) TCGA-06-A7TK-01 2 27448578 27448578 G A CAD Silent p.Q542Q 0.38 TCGA-06-A7TK-01 2 76975739 76975739 G A LRRTM4 3'UTR 0.22 TCGA-06-A7TK-01 2 88367441 88367441 G A SMYD1 Missense_Mutation p.G20S 0.31 deleterious(0.01) benign(0.428) TCGA-06-A7TK-01 3 113801550 113801550 G A QTRTD1 Missense_Mutation p.E321K 0.36 tolerated(0.66) benign(0.003) TCGA-06-A7TK-01 3 49785422 49785422 G A IP6K1 Missense_Mutation p.R18W 0.37 deleterious(0.02) benign(0.131) TCGA-06-A7TK-01 3 7503372 7503372 G A GRM7 Missense_Mutation p.R493H 0.37 tolerated(0.07) benign(0.001) TCGA-06-A7TK-01 4 96762200 96762200 G A PDHA2 Missense_Mutation p.R300H 0.36 deleterious(0) benign(0.343) TCGA-06-A7TK-01 5 143586715 143586715 C T KCTD16 Silent p.S146S 0.30 TCGA-06-A7TK-01 5 41313844 41313844 G A PLCXD3 Missense_Mutation p.R281C 0.17 deleterious(0) possibly_damaging(0.872) TCGA-06-A7TK-01 6 150569992 150569992 A - PPP1R14C 3'UTR 0.32 TCGA-06-A7TK-01 6 31854860 31854860 T C EHMT2 Missense_Mutation p.N677S 0.42 tolerated(0.09) benign(0.085) TCGA-06-A7TK-01 6 31994816 31994816 C T C4B Missense_Mutation p.L837F 0.30 deleterious(0) probably_damaging(0.993) TCGA-06-A7TK-01 6 49806189 49806189 A C CRISP1 Missense_Mutation p.C195G 0.26 deleterious(0) probably_damaging(1) TCGA-06-A7TK-01 6 619481 619481 C A EXOC2 Missense_Mutation p.S162I 0.42 deleterious(0.03) probably_damaging(0.944) TCGA-06-A7TK-01 7 106519984 106519984 G A PIK3CG Missense_Mutation p.M804I 0.24 deleterious(0.01) possibly_damaging(0.824) TCGA-06-A7TK-01 7 128503066 128503066 C T ATP6V1F Silent p.F36F 0.23 TCGA-06-A7TK-01 7 131865411 131865411 G A PLXNA4 Silent p.T1191T 0.23 TCGA-06-A7TK-01 7 147675027 147675027 C T CNTNAP2 Missense_Mutation p.R777C 0.31 deleterious(0) probably_damaging(0.989) TCGA-06-A7TK-01 7 152522194 152522194 G T ACTR3B Missense_Mutation p.R313L 0.33 deleterious(0) probably_damaging(0.966) TCGA-06-A7TK-01 7 82582569 82582571 TTG - PCLO In_Frame_Del p.N2566del 0.25 TCGA-06-A7TK-01 8 120977508 120977508 G A DEPTOR Silent p.R154R 0.25 TCGA-06-A7TK-01 8 144940563 144940563 C T EPPK1 Missense_Mutation p.V2287M 0.05 probably_damaging(0.999) TCGA-06-A7TK-01 8 15517014 15517014 A T TUSC3 Splice_Site p.X143_splice 0.17 TCGA-06-A7TK-01 8 24254921 24254921 C T ADAMDEC1 Silent p.D193D 0.34 TCGA-06-A7TK-01 9 113704022 113704022 G A LPAR1 Missense_Mutation p.R158W 0.40 deleterious(0.01) possibly_damaging(0.727) TCGA-06-A7TK-01 9 138642851 138642851 G A KCNT1 Missense_Mutation p.R133H 0.08 deleterious(0) probably_damaging(0.978) TCGA-06-A7TK-01 9 36108028 36108028 G C RECK Missense_Mutation p.Q544H 0.28 deleterious(0.01) possibly_damaging(0.73) TCGA-06-A7TK-01 X 144904666 144904669 TGTC - SLITRK2 Frame_Shift_Del p.C243Rfs*11 0.72 TCGA-06-A7TK-01 X 35820491 35820491 A G MAGEB16 Missense_Mutation p.S60G 0.17 tolerated(0.1) benign(0.098) TCGA-06-A7TK-01 X 70347196 70347196 G A MED12 Missense_Mutation p.V954I 0.77 benign(0.246) TCGA-06-A7TL-01 11 1103317 1103317 G A MUC2 Silent p.P2689P 0.14 TCGA-06-A7TL-01 11 118850269 118850269 G A FOXR1 Missense_Mutation p.G168R 0.31 tolerated(0.74) benign(0.368) TCGA-06-A7TL-01 11 66481594 66481594 T C SPTBN2 Silent p.G208G 0.44 TCGA-06-A7TL-01 14 103597466 103597466 T C TNFAIP2 Missense_Mutation p.I426T 0.36 deleterious(0.02) benign(0.364) TCGA-06-A7TL-01 16 2546185 2546185 A G RP11-20I23.1 Silent p.K12K 0.41 TCGA-06-A7TL-01 17 18023454 18023454 G A MYO15A Missense_Mutation p.G447E 0.46 possibly_damaging(0.475) TCGA-06-A7TL-01 17 35797967 35797967 G A TADA2A Intron 0.12 TCGA-06-A7TL-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.78 deleterious(0) probably_damaging(0.994) TCGA-06-A7TL-01 18 55359218 55359220 AAC - ATP8B1 In_Frame_Del p.V347del 0.36 TCGA-06-A7TL-01 19 58232264 58232264 T A ZNF671 Missense_Mutation p.Y397F 0.31 tolerated(0.11) probably_damaging(0.992) TCGA-06-A7TL-01 1 173454570 173454570 G A PRDX6 Missense_Mutation p.R108Q 0.35 tolerated(0.07) benign(0.332) TCGA-06-A7TL-01 1 178489977 178489977 C T TEX35 Silent p.L171L 0.34 TCGA-06-A7TL-01 1 180904930 180904930 G A KIAA1614 Missense_Mutation p.G629R 0.39 tolerated(0.28) benign(0.013) TCGA-06-A7TL-01 1 247587657 247587657 C T NLRP3 Silent p.F304F 0.33 TCGA-06-A7TL-01 1 85331434 85331434 C T LPAR3 Missense_Mutation p.A124T 0.34 deleterious(0) probably_damaging(1) TCGA-06-A7TL-01 22 38147835 38147835 G C TRIOBP Missense_Mutation p.E1793D 0.14 deleterious(0) probably_damaging(0.996) TCGA-06-A7TL-01 2 1500505 1500505 A G TPO Missense_Mutation p.E785G 0.35 tolerated(0.39) benign(0.001) TCGA-06-A7TL-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.26 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-06-A7TL-01 2 228163524 228163524 G A COL4A3 Missense_Mutation p.R1293H 0.08 unknown(0) TCGA-06-A7TL-01 2 233323452 233323452 G A ALPI Missense_Mutation p.E432K 0.31 tolerated(0.13) benign(0.004) TCGA-06-A7TL-01 3 179051863 179051863 A T ZNF639 Nonsense_Mutation p.K371* 0.28 TCGA-06-A7TL-01 3 45554637 45554637 C G LARS2 Missense_Mutation p.H591D 0.52 tolerated(0.3) benign(0.431) TCGA-06-A7TL-01 4 151817591 151817591 T G LRBA Missense_Mutation p.E674D 0.33 tolerated(0.32) benign(0.009) TCGA-06-A7TL-01 6 110757109 110757109 G A SLC22A16 Missense_Mutation p.A456V 0.47 tolerated(0.6) benign(0.096) TCGA-06-A7TL-01 6 131904287 131904287 C G ARG1 Silent p.L224L 0.26 TCGA-06-A7TL-01 6 151054792 151054792 G A PLEKHG1 5'UTR 0.36 TCGA-06-A7TL-01 6 34741422 34741422 T C SNRPC 3'UTR 0.61 TCGA-06-A7TL-01 7 40899957 40899957 G T SUGCT Missense_Mutation p.R432M 0.34 tolerated(0.15) benign(0.424) TCGA-06-A7TL-01 8 107715206 107715206 G T OXR1 Missense_Mutation p.V251F 0.36 deleterious(0) probably_damaging(1) TCGA-06-A7TL-01 8 31498114 31498114 A T NRG1 Missense_Mutation p.Y58F 0.20 deleterious(0) benign(0.074) TCGA-06-A7TL-01 8 36662757 36662757 T C KCNU1 Missense_Mutation p.I141T 0.29 deleterious(0.02) benign(0.36) TCGA-06-A7TL-01 9 84606171 84606171 T A SPATA31D1 Silent p.P262P 0.32 TCGA-06-A7TL-01 X 102318034 102318048 GCCTAACGCGGAACC - BEX1 In_Frame_Del p.R52_R56del 0.29 TCGA-06-A7TL-01 X 12734979 12734979 C T FRMPD4 Missense_Mutation p.R801C 0.55 deleterious(0) possibly_damaging(0.696) TCGA-06-A7TL-01 X 149818341 149818341 T C MTM1 Silent p.S340S 0.41 TCGA-06-A7TL-01 X 76918907 76918907 C A ATRX Nonsense_Mutation p.E1362* 0.27 TCGA-08-0386-01 11 45891983 45891983 G A CRY2 Silent p.V504V 0.15 TCGA-08-0386-01 13 41766179 41766179 C T KBTBD7 3'UTR 0.28 TCGA-08-0386-01 14 24808471 24808471 C T RIPK3 Missense_Mutation p.R74H 0.10 tolerated(0.58) benign(0.017) TCGA-08-0386-01 17 10404048 10404048 G A MYH1 Missense_Mutation p.R1254C 0.12 deleterious(0) benign(0.029) TCGA-08-0386-01 19 36018764 36018764 G A SBSN Silent p.H140H 0.16 TCGA-08-0386-01 19 39205183 39205183 C T ACTN4 Silent p.Y298Y 0.11 TCGA-08-0386-01 19 49132916 49132916 C T SPHK2 Silent p.G617G 0.19 TCGA-08-0386-01 19 56539737 56539737 C T NLRP5 Missense_Mutation p.P713L 0.05 tolerated(0.34) benign(0.016) TCGA-08-0386-01 19 59081801 59081801 C G MZF1 Missense_Mutation p.E164Q 0.24 tolerated(0.35) benign(0.309) TCGA-08-0386-01 1 248512862 248512862 G A OR14C36 Silent p.A262A 0.18 TCGA-08-0386-01 1 47838725 47838725 C T CMPK1 Silent p.T139T 0.07 TCGA-08-0386-01 1 89294277 89294277 G A PKN2 Missense_Mutation p.V845M 0.07 deleterious(0) probably_damaging(0.982) TCGA-08-0386-01 21 42812934 42812934 G A MX1 Missense_Mutation p.E238K 0.06 tolerated(0.14) benign(0.055) TCGA-08-0386-01 3 38051499 38051499 G C PLCD1 Missense_Mutation p.L416V 0.06 tolerated(0.83) benign(0.095) TCGA-08-0386-01 5 32230234 32230234 C T MTMR12 Missense_Mutation p.E632K 0.16 tolerated(0.4) possibly_damaging(0.895) TCGA-08-0386-01 6 33380059 33380059 C T PHF1 Silent p.L7L 0.08 TCGA-08-0386-01 6 56044496 56044496 T C COL21A1 Missense_Mutation p.T174A 0.07 tolerated(0.21) benign(0.044) TCGA-12-0615-01 11 32450114 32450114 G A WT1 Missense_Mutation p.S233L 0.52 deleterious_low_confidence(0) possibly_damaging(0.64) TCGA-12-0615-01 11 62948177 62948177 C T SLC22A25 Missense_Mutation p.R342H 0.45 tolerated(0.38) benign(0.113) TCGA-12-0615-01 11 6655171 6655171 C G DCHS1 Missense_Mutation p.E689D 0.33 tolerated(0.6) benign(0.003) TCGA-12-0615-01 11 72423533 72423533 G A ARAP1 Silent p.D276D 0.50 TCGA-12-0615-01 12 107208579 107208579 T G RIC8B Missense_Mutation p.L80V 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-12-0615-01 12 122613736 122613736 G A MLXIP Missense_Mutation p.R220Q 0.29 deleterious(0) probably_damaging(0.998) TCGA-12-0615-01 12 72092727 72092727 G A TMEM19 Missense_Mutation p.G229S 0.38 deleterious(0) probably_damaging(0.982) TCGA-12-0615-01 12 93968661 93968661 C T SOCS2 Silent p.D101D 0.39 TCGA-12-0615-01 13 53422254 53422254 G T PCDH8 Missense_Mutation p.F106L 0.05 tolerated(0.19) benign(0.005) TCGA-12-0615-01 15 88679192 88679192 A C NTRK3 Missense_Mutation p.L282R 0.42 deleterious(0) probably_damaging(0.996) TCGA-12-0615-01 16 10837884 10837884 G A NUBP1 Missense_Mutation p.R29Q 0.55 tolerated(0.67) benign(0.001) TCGA-12-0615-01 16 1129320 1129320 G A SSTR5 Missense_Mutation p.R151H 0.50 deleterious(0) probably_damaging(1) TCGA-12-0615-01 16 29888214 29888214 G T SEZ6L2 Missense_Mutation p.T656K 0.06 deleterious(0) probably_damaging(0.991) TCGA-12-0615-01 16 32266322 32266322 G A TP53TG3D 3'UTR 0.29 TCGA-12-0615-01 17 12862174 12862174 G A ARHGAP44 Missense_Mutation p.A495T 0.21 deleterious(0.01) possibly_damaging(0.701) TCGA-12-0615-01 17 18651317 18651317 C T FBXW10 Missense_Mutation p.A190V 0.30 tolerated(0.11) benign(0.001) TCGA-12-0615-01 17 27380567 27380567 G C PIPOX Missense_Mutation p.W205S 0.37 deleterious(0) probably_damaging(1) TCGA-12-0615-01 17 61613122 61613122 G A KCNH6 Silent p.A398A 0.04 TCGA-12-0615-01 17 66042757 66042757 T C KPNA2 3'UTR 0.43 TCGA-12-0615-01 17 7330635 7330635 C T C17orf74 Missense_Mutation p.P442L 0.41 deleterious(0.03) probably_damaging(0.96) TCGA-12-0615-01 18 7010303 7010303 G C LAMA1 Missense_Mutation p.Q1257E 0.45 deleterious(0) probably_damaging(0.957) TCGA-12-0615-01 19 10444148 10444148 C T RAVER1 Silent p.P29P 0.05 TCGA-12-0615-01 19 1250466 1250466 C G MIDN Silent p.R57R 0.58 TCGA-12-0615-01 19 17366376 17366376 G A USHBP1 Missense_Mutation p.R504W 0.09 deleterious(0) possibly_damaging(0.902) TCGA-12-0615-01 19 3924596 3924596 C T ATCAY 3'UTR 0.41 TCGA-12-0615-01 19 43358238 43358238 C T PSG10P RNA 0.40 TCGA-12-0615-01 19 43371360 43371360 G A PSG1 3'UTR 0.35 TCGA-12-0615-01 19 57669765 57669766 - T DUXA Frame_Shift_Ins p.N123Kfs*7 0.34 TCGA-12-0615-01 1 109801473 109801473 G A CELSR2 Missense_Mutation p.V1244M 0.39 deleterious(0.01) benign(0.27) TCGA-12-0615-01 1 113239252 113239252 G A MOV10 Missense_Mutation p.G661E 0.70 deleterious(0) probably_damaging(0.998) TCGA-12-0615-01 1 152060548 152060548 G A TCHHL1 Silent p.N24N 0.60 TCGA-12-0615-01 1 152733665 152733665 G T KPRP Missense_Mutation p.S534I 0.33 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-12-0615-01 1 162749984 162749984 G A DDR2 Missense_Mutation p.R839H 0.60 deleterious(0) probably_damaging(1) TCGA-12-0615-01 1 170007466 170007466 C T KIFAP3 Missense_Mutation p.R161Q 0.37 deleterious(0.01) probably_damaging(1) TCGA-12-0615-01 1 24507335 24507335 C T IFNLR1 Missense_Mutation p.R23H 0.40 tolerated(0.74) benign(0.006) TCGA-12-0615-01 1 38327970 38327970 T C INPP5B 3'UTR 0.40 TCGA-12-0615-01 1 55273597 55273597 A T C1orf177 Missense_Mutation p.K131N 0.47 deleterious(0.02) benign(0.178) TCGA-12-0615-01 20 17389925 17389925 C T PCSK2 Silent p.Y187Y 0.37 TCGA-12-0615-01 20 62729348 62729348 G A OPRL1 Missense_Mutation p.A143T 0.49 tolerated(0.25) possibly_damaging(0.697) TCGA-12-0615-01 21 19775931 19775931 C T TMPRSS15 Silent p.S3S 0.41 TCGA-12-0615-01 21 31538845 31538845 T C CLDN17 Missense_Mutation p.R31G 0.43 deleterious(0) probably_damaging(0.968) TCGA-12-0615-01 21 42762561 42762561 G C MX2 Missense_Mutation p.V268L 0.36 deleterious(0) probably_damaging(0.999) TCGA-12-0615-01 22 46930786 46930786 G A CELSR1 Missense_Mutation p.A761V 0.44 tolerated(0.18) possibly_damaging(0.523) TCGA-12-0615-01 2 107040025 107040025 T A RGPD3 Silent p.T1466T 0.20 TCGA-12-0615-01 2 167262324 167262324 T C SCN7A Silent p.L1605L 0.38 TCGA-12-0615-01 2 196741332 196741332 A G DNAH7 Missense_Mutation p.I2018T 0.36 deleterious(0.02) possibly_damaging(0.718) TCGA-12-0615-01 2 219131281 219131281 G A AAMP Silent p.V188V 0.32 TCGA-12-0615-01 2 98354224 98354224 G A ZAP70 Missense_Mutation p.R496H 0.72 tolerated(0.1) probably_damaging(0.953) TCGA-12-0615-01 3 189700930 189700930 C T LEPREL1 Splice_Site p.X410_splice 0.29 TCGA-12-0615-01 3 48538580 48538580 G A SHISA5 Missense_Mutation p.P75S 0.25 tolerated(0.72) benign(0.064) TCGA-12-0615-01 3 51864829 51864829 C T IQCF3 3'UTR 0.31 TCGA-12-0615-01 3 56468977 56468977 C T ERC2 Missense_Mutation p.R20H 0.22 tolerated(0.05) probably_damaging(0.984) TCGA-12-0615-01 3 68055847 68055847 C T FAM19A1 Silent p.S26S 0.25 TCGA-12-0615-01 3 74316462 74316462 C A CNTN3 Missense_Mutation p.E924D 0.23 tolerated(0.49) benign(0.027) TCGA-12-0615-01 4 10086069 10086070 - T WDR1 Frame_Shift_Ins p.I346Nfs*2 0.28 TCGA-12-0615-01 4 154702675 154702675 C T SFRP2 Silent p.S272S 0.40 TCGA-12-0615-01 4 48622786 48622786 A C FRYL Missense_Mutation p.S62A 0.47 tolerated(0.8) benign(0.345) TCGA-12-0615-01 4 69403557 69403557 C T UGT2B17 Missense_Mutation p.R460Q 0.40 tolerated(0.05) possibly_damaging(0.826) TCGA-12-0615-01 5 180622296 180622296 A G TRIM7 Missense_Mutation p.V469A 0.27 tolerated(1) benign(0.032) TCGA-12-0615-01 6 125379096 125379096 C T RNF217 Silent p.C83C 0.57 TCGA-12-0615-01 6 39033981 39033981 G A GLP1R Silent p.P137P 0.34 TCGA-12-0615-01 7 55874801 55874801 G C SEPT14 Missense_Mutation p.P323R 0.65 deleterious(0.04) probably_damaging(0.985) TCGA-12-0615-01 7 99507253 99507253 C T TRIM4 Missense_Mutation p.V168M 0.27 tolerated(0.1) benign(0.004) TCGA-12-0615-01 8 104412724 104412724 C G SLC25A32 Missense_Mutation p.R288T 0.38 deleterious(0.02) benign(0.192) TCGA-12-0615-01 8 67546807 67546807 C A VCPIP1 Nonsense_Mutation p.E1200* 0.42 TCGA-12-0615-01 9 100823174 100823174 C T NANS Silent p.Y81Y 0.40 TCGA-12-0615-01 9 113173811 113173811 G T SVEP1 Silent p.L2060L 0.47 TCGA-12-0615-01 9 36060144 36060144 C G RECK Missense_Mutation p.S88C 0.36 deleterious(0) possibly_damaging(0.819) TCGA-12-0615-01 9 74345061 74345061 C T TMEM2 Missense_Mutation p.G628S 0.41 tolerated(0.05) possibly_damaging(0.766) TCGA-12-0615-01 9 96030055 96030055 G A WNK2 Missense_Mutation p.E1242K 0.44 unknown(0) TCGA-12-0615-01 X 10066544 10066544 A T WWC3 Splice_Site p.X220_splice 0.39 TCGA-12-0615-01 X 104463874 104463874 G A TEX13A Silent p.S334S 0.45 TCGA-12-0615-01 X 107224215 107224215 G A TEX13B 3'UTR 0.39 TCGA-12-0615-01 X 123514489 123514489 C A TENM1 Missense_Mutation p.G2699V 0.38 deleterious(0) probably_damaging(0.996) TCGA-12-0615-01 X 148584816 148584816 C A IDS Intron 0.54 TCGA-12-0615-01 X 153069052 153069052 C T PDZD4 Missense_Mutation p.R689H 0.35 deleterious(0) probably_damaging(0.999) TCGA-12-0615-01 X 29973596 29973596 C G IL1RAPL1 Missense_Mutation p.L584V 0.32 deleterious(0) probably_damaging(0.978) TCGA-12-0615-01 X 3228536 3228536 G T MXRA5 Missense_Mutation p.P2570T 0.30 deleterious(0) possibly_damaging(0.833) TCGA-12-0615-01 X 36103484 36103484 C T CHDC2 Missense_Mutation p.S157F 0.43 tolerated(0.32) possibly_damaging(0.83) TCGA-12-0615-01 X 70460762 70460762 G A ZMYM3 3'UTR 0.37 TCGA-12-0616-01 11 102743841 102743841 C G MMP12 Intron 0.77 TCGA-12-0616-01 11 4566682 4566682 T C OR52M1 Missense_Mutation p.W88R 0.63 deleterious(0) probably_damaging(0.968) TCGA-12-0616-01 11 55872670 55872670 G A OR8H2 Missense_Mutation p.R51H 0.16 tolerated(0.31) benign(0.002) TCGA-12-0616-01 11 5968802 5968802 G A OR56A3 Missense_Mutation p.V76M 0.69 tolerated(0.08) benign(0.149) TCGA-12-0616-01 11 65830517 65830517 A G SF3B2 Missense_Mutation p.K672R 0.52 tolerated(0.06) probably_damaging(0.924) TCGA-12-0616-01 11 71259550 71259550 G A KRTAP5-9 5'UTR 0.10 TCGA-12-0616-01 11 85309746 85309746 T C DLG2 5'UTR 0.75 TCGA-12-0616-01 12 132635897 132635897 C T NOC4L Missense_Mutation p.L353F 0.04 deleterious(0) probably_damaging(0.949) TCGA-12-0616-01 12 6729589 6729589 G A LPAR5 Missense_Mutation p.R276C 0.62 deleterious(0) possibly_damaging(0.864) TCGA-12-0616-01 13 100809554 100809554 A G PCCA Missense_Mutation p.Y143C 0.49 deleterious(0) probably_damaging(0.999) TCGA-12-0616-01 14 107218788 107218788 G A IGHV3-74 Missense_Mutation p.A80V 0.08 deleterious_low_confidence(0.03) benign(0.109) TCGA-12-0616-01 14 34270129 34270129 C T NPAS3 Silent p.L872L 0.47 TCGA-12-0616-01 16 24366270 24366270 G A CACNG3 Missense_Mutation p.A138T 0.39 deleterious(0.02) possibly_damaging(0.698) TCGA-12-0616-01 17 20805636 20805636 C T RP11-344E13.3 RNA 0.39 TCGA-12-0616-01 17 48072315 48072315 G A DLX3 Silent p.I16I 0.44 TCGA-12-0616-01 17 67111007 67111007 C T ABCA6 Missense_Mutation p.V560I 0.32 tolerated(0.57) benign(0.08) TCGA-12-0616-01 19 17837113 17837113 G A MAP1S Missense_Mutation p.R307H 0.10 deleterious(0) probably_damaging(0.996) TCGA-12-0616-01 19 19243312 19243312 G A TMEM161A Missense_Mutation p.R98C 0.03 deleterious(0.04) benign(0.066) TCGA-12-0616-01 19 51009714 51009714 G A JOSD2 Missense_Mutation p.R130C 0.38 deleterious(0) probably_damaging(0.998) TCGA-12-0616-01 1 153391728 153391728 C T S100A7A Silent p.A83A 0.45 TCGA-12-0616-01 1 155287783 155287783 C T FDPS Missense_Mutation p.R178C 0.32 deleterious(0.04) possibly_damaging(0.475) TCGA-12-0616-01 1 167806486 167806486 C T ADCY10 Splice_Site p.X1026_splice 0.35 TCGA-12-0616-01 1 17593214 17593214 C T PADI3 Missense_Mutation p.R137W 0.30 deleterious(0.01) possibly_damaging(0.773) TCGA-12-0616-01 1 22186712 22186712 C T HSPG2 Missense_Mutation p.V1658M 0.34 benign(0.384) TCGA-12-0616-01 1 226040425 226040425 G A TMEM63A Silent p.L615L 0.26 TCGA-12-0616-01 1 51768762 51768762 C T TTC39A Missense_Mutation p.V257M 0.42 deleterious(0.02) possibly_damaging(0.757) TCGA-12-0616-01 1 53932300 53932300 C G DMRTB1 Missense_Mutation p.P332A 0.29 tolerated(0.11) unknown(0) TCGA-12-0616-01 1 70703140 70703140 C G SRSF11 Missense_Mutation p.P208R 0.37 deleterious(0) unknown(0) TCGA-12-0616-01 22 46793605 46793605 G A CELSR1 Silent p.D1889D 0.39 TCGA-12-0616-01 2 133541700 133541700 G A NCKAP5 Missense_Mutation p.S895L 0.44 tolerated(0.24) benign(0.006) TCGA-12-0616-01 2 152477436 152477436 A G NEB Silent p.S3519S 0.48 TCGA-12-0616-01 2 171705817 171705817 C T GAD1 Missense_Mutation p.L381F 0.39 deleterious(0.01) probably_damaging(1) TCGA-12-0616-01 2 37035618 37035618 G A VIT Missense_Mutation p.V465M 0.47 deleterious(0) probably_damaging(0.998) TCGA-12-0616-01 3 121980782 121980782 C T CASR Silent p.A300A 0.35 TCGA-12-0616-01 3 44692551 44692551 G A ZNF35 5'UTR 0.44 TCGA-12-0616-01 3 52409985 52409986 - A DNAH1 Frame_Shift_Ins p.S2394Kfs*61 0.32 TCGA-12-0616-01 4 48559631 48559631 T G FRYL Missense_Mutation p.K1322Q 0.09 tolerated(0.29) possibly_damaging(0.635) TCGA-12-0616-01 4 55592080 55592080 G A KIT Silent p.P468P 0.40 TCGA-12-0616-01 5 180582407 180582407 C T OR2V2 Silent p.I155I 0.42 TCGA-12-0616-01 5 90136528 90136528 C T GPR98 Missense_Mutation p.T5582M 0.31 probably_damaging(0.93) TCGA-12-0616-01 6 145115044 145115044 A G UTRN Missense_Mutation p.I2999V 0.05 tolerated(0.09) possibly_damaging(0.868) TCGA-12-0616-01 6 32013041 32013041 G T TNXB 5'UTR 0.17 TCGA-12-0616-01 7 102949403 102949403 G A PMPCB Missense_Mutation p.R285H 0.05 deleterious(0) probably_damaging(0.971) TCGA-12-0616-01 7 128494166 128494166 A G FLNC Missense_Mutation p.E2208G 0.05 tolerated(0.11) benign(0) TCGA-12-0616-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.31 deleterious(0) possibly_damaging(0.75) TCGA-12-0616-01 7 77552026 77552026 G A PHTF2 Silent p.V316V 0.43 TCGA-12-0616-01 7 98522846 98522846 G C TRRAP Missense_Mutation p.D979H 0.10 probably_damaging(0.987) TCGA-12-0616-01 9 133942520 133942520 G A LAMC3 Missense_Mutation p.D841N 0.06 tolerated(0.42) possibly_damaging(0.493) TCGA-12-0616-01 9 136230531 136230531 G A SURF4 Silent p.N216N 0.36 TCGA-12-0616-01 9 4706194 4706194 T C CDC37L1 3'UTR 0.42 TCGA-12-0616-01 9 85958187 85958187 A G FRMD3 Silent p.L130L 0.06 TCGA-12-0616-01 X 125686329 125686329 G A DCAF12L1 Missense_Mutation p.T88M 0.46 deleterious(0.01) possibly_damaging(0.701) TCGA-12-0616-01 X 140995245 140995245 G A MAGEC1 Silent p.G685G 0.36 TCGA-12-0616-01 X 152735936 152735936 G A HAUS7 Missense_Mutation p.A37V 0.28 tolerated(0.07) possibly_damaging(0.876) TCGA-12-0616-01 X 53576344 53576344 C T HUWE1 Missense_Mutation p.R3204H 0.35 possibly_damaging(0.522) TCGA-12-0618-01 10 89653779 89653780 - AGAT PTEN Intron p.I28Rfs*17 0.84 TCGA-12-0618-01 11 5275527 5275527 A G HBG2 Missense_Mutation p.F104L 0.03 deleterious(0.01) probably_damaging(0.973) TCGA-12-0618-01 11 55653609 55653610 - A TRIM51 Frame_Shift_Ins p.M144Nfs*10 0.36 TCGA-12-0618-01 11 61898063 61898063 G A INCENP Splice_Site p.X355_splice 0.49 TCGA-12-0618-01 11 69063304 69063304 C A MYEOV Missense_Mutation p.D129E 0.03 deleterious_low_confidence(0) probably_damaging(0.923) TCGA-12-0618-01 11 8008825 8008825 T C EIF3F 5'UTR 0.47 TCGA-12-0618-01 12 6127617 6127617 G A VWF Missense_Mutation p.T1656M 0.41 tolerated(0.15) possibly_damaging(0.615) TCGA-12-0618-01 13 42481750 42481750 C T VWA8 Missense_Mutation p.R152H 0.03 deleterious(0.02) benign(0.045) TCGA-12-0618-01 13 50587073 50587073 A T TRIM13 Missense_Mutation p.T336S 0.43 tolerated(0.9) benign(0.001) TCGA-12-0618-01 13 86369237 86369237 G T SLITRK6 Missense_Mutation p.N469K 0.13 deleterious(0) probably_damaging(1) TCGA-12-0618-01 14 77843838 77843839 - TG SAMD15 Frame_Shift_Ins p.G27Vfs*52 0.31 TCGA-12-0618-01 14 94912764 94912764 G A SERPINA11 Missense_Mutation p.A274V 0.45 tolerated(0.28) benign(0.01) TCGA-12-0618-01 15 20488861 20488861 G T CHEK2P2 RNA 0.11 TCGA-12-0618-01 15 25423748 25423748 G T SNORD115-6 5'Flank 0.34 TCGA-12-0618-01 15 45658329 45658329 T C GATM Missense_Mutation p.D298G 0.05 tolerated(0.28) benign(0.422) TCGA-12-0618-01 17 5322843 5322843 G A NUP88 Missense_Mutation p.A43V 0.94 tolerated(0.14) benign(0.003) TCGA-12-0618-01 17 56084504 56084504 T A SRSF1 5'UTR 0.18 TCGA-12-0618-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.91 deleterious(0) probably_damaging(1) TCGA-12-0618-01 18 60243794 60243794 G A ZCCHC2 Silent p.T1173T 0.43 TCGA-12-0618-01 19 22846654 22846654 T A ZNF492 Missense_Mutation p.N61K 0.57 deleterious(0.01) possibly_damaging(0.727) TCGA-12-0618-01 19 35801013 35801013 G A MAG Missense_Mutation p.A490T 0.47 tolerated(0.11) benign(0.298) TCGA-12-0618-01 19 41512932 41512932 T C CYP2B6 Missense_Mutation p.Y203H 0.03 tolerated(0.34) benign(0.061) TCGA-12-0618-01 19 49398651 49398651 G A TULP2 Silent p.R107R 0.04 TCGA-12-0618-01 19 52496088 52496088 G A ZNF615 3'UTR 0.47 TCGA-12-0618-01 19 58596399 58596399 C A ZSCAN18 Missense_Mutation p.A452S 0.18 tolerated(0.26) benign(0.031) TCGA-12-0618-01 19 7531967 7531967 G A ARHGEF18 Missense_Mutation p.R803Q 0.48 tolerated(0.05) possibly_damaging(0.904) TCGA-12-0618-01 1 152324215 152324215 G A FLG2 Missense_Mutation p.T2016I 0.45 benign(0.017) TCGA-12-0618-01 1 158585037 158585037 G A SPTA1 Nonsense_Mutation p.Q2253* 0.50 TCGA-12-0618-01 1 161647353 161647353 T A FCGR2B 3'UTR 0.09 TCGA-12-0618-01 1 173155865 173155865 G A TNFSF4 Silent p.N114N 0.06 TCGA-12-0618-01 1 185125867 185125867 C T TRMT1L 5'UTR 0.46 TCGA-12-0618-01 1 201191952 201191952 T G IGFN1 Missense_Mutation p.F3429L 0.42 probably_damaging(0.98) TCGA-12-0618-01 1 226420896 226420896 T C LIN9 Splice_Site p.X492_splice 0.50 TCGA-12-0618-01 1 44595136 44595136 G A KLF17 Missense_Mutation p.A65T 0.45 tolerated(1) benign(0) TCGA-12-0618-01 20 35865068 35865068 G A RPN2 Silent p.T613T 0.46 TCGA-12-0618-01 20 51870661 51870661 G A TSHZ2 Missense_Mutation p.A222T 0.36 deleterious(0) probably_damaging(0.999) TCGA-12-0618-01 22 31524557 31524557 C T INPP5J Nonsense_Mutation p.Q336* 0.44 TCGA-12-0618-01 22 41863525 41863525 C T PHF5A Missense_Mutation p.R57H 0.43 tolerated(0.07) benign(0.178) TCGA-12-0618-01 22 42456400 42456400 T G NAGA Silent p.S373S 0.06 TCGA-12-0618-01 2 201523898 201523898 G A AOX1 Missense_Mutation p.R1061H 0.44 tolerated(0.09) probably_damaging(0.984) TCGA-12-0618-01 2 233899564 233899564 C T NEU2 Nonsense_Mutation p.R314* 0.46 TCGA-12-0618-01 2 238280769 238280769 G A COL6A3 Silent p.N1297N 0.39 TCGA-12-0618-01 2 242758284 242758284 C G NEU4 Missense_Mutation p.F468L 0.42 deleterious(0) probably_damaging(0.967) TCGA-12-0618-01 2 27682592 27682592 G T IFT172 Missense_Mutation p.H876N 0.47 deleterious(0) probably_damaging(0.971) TCGA-12-0618-01 3 108474644 108474644 C T RETNLB Missense_Mutation p.R106H 0.38 tolerated(0.06) possibly_damaging(0.515) TCGA-12-0618-01 3 169694809 169694809 C A SEC62 Missense_Mutation p.T74N 0.44 tolerated(0.25) benign(0.106) TCGA-12-0618-01 4 107846994 107846994 C T DKK2 Missense_Mutation p.R112Q 0.48 deleterious(0) probably_damaging(0.992) TCGA-12-0618-01 5 145393517 145393517 C T SH3RF2 Missense_Mutation p.R318C 0.45 deleterious(0) possibly_damaging(0.893) TCGA-12-0618-01 6 29275286 29275286 G A OR14J1 Missense_Mutation p.V274I 0.03 tolerated(0.48) benign(0.009) TCGA-12-0618-01 6 49696554 49696554 G A CRISP3 Silent p.Y232Y 0.35 TCGA-12-0618-01 6 88318866 88318866 A T ORC3 Missense_Mutation p.Q211L 0.48 deleterious(0.02) benign(0.197) TCGA-12-0618-01 7 102086975 102086975 G A ORAI2 Missense_Mutation p.V81M 0.30 deleterious(0.02) probably_damaging(0.998) TCGA-12-0618-01 7 148515006 148515009 TTCT - EZH2 Frame_Shift_Del p.E401Kfs*22 0.36 TCGA-12-0618-01 7 87079357 87079357 C T ABCB4 Missense_Mutation p.A254T 0.31 deleterious(0.05) probably_damaging(0.983) TCGA-12-0618-01 8 72156896 72156896 C A EYA1 Missense_Mutation p.R361L 0.49 deleterious(0.04) benign(0.257) TCGA-12-0618-01 8 91031335 91031335 G A DECR1 Missense_Mutation p.V118M 0.05 deleterious(0) probably_damaging(0.98) TCGA-12-0618-01 9 133543671 133543671 G A PRDM12 Missense_Mutation p.G181S 0.27 tolerated(0.09) probably_damaging(0.972) TCGA-12-0618-01 9 32629963 32629963 C T TAF1L 3'UTR 0.31 TCGA-12-0619-01 10 90674395 90674395 G T STAMBPL1 Nonsense_Mutation p.G295* 0.77 TCGA-12-0619-01 11 18731138 18731138 G A IGSF22 Missense_Mutation p.P932S 0.48 tolerated(0.11) probably_damaging(0.927) TCGA-12-0619-01 11 7960124 7960124 C A OR10A3 Nonstop_Mutation p.*315Lext*3 0.48 TCGA-12-0619-01 12 113565893 113565893 G C RASAL1 Nonsense_Mutation p.Y71* 0.03 TCGA-12-0619-01 12 7980153 7980153 G A SLC2A14 Nonsense_Mutation p.R291* 0.38 TCGA-12-0619-01 12 8082342 8082342 G A SLC2A3 Nonsense_Mutation p.R267* 0.10 TCGA-12-0619-01 14 19990625 19990625 G C POTEM Missense_Mutation p.Q484E 0.22 deleterious_low_confidence(0) possibly_damaging(0.68) TCGA-12-0619-01 14 22102746 22102746 G A OR10G2 Missense_Mutation p.R85W 0.46 deleterious(0) possibly_damaging(0.816) TCGA-12-0619-01 14 35005432 35005432 G A EAPP Nonsense_Mutation p.R42* 0.37 TCGA-12-0619-01 14 95899695 95899695 G A SYNE3 Missense_Mutation p.R864C 0.39 tolerated(0.1) possibly_damaging(0.776) TCGA-12-0619-01 15 43525374 43525374 G A TGM5 3'UTR 0.60 TCGA-12-0619-01 15 72767077 72767077 G A ARIH1 Missense_Mutation p.D33N 0.79 deleterious_low_confidence(0.03) unknown(0) TCGA-12-0619-01 16 20492162 20492162 G A ACSM2A Silent p.S476S 0.32 TCGA-12-0619-01 16 26147419 26147419 G A HS3ST4 Silent p.R407R 0.27 TCGA-12-0619-01 16 29897033 29897033 C T SEZ6L2 Missense_Mutation p.V416M 0.45 tolerated(0.1) benign(0.207) TCGA-12-0619-01 16 48303999 48303999 G A LONP2 Missense_Mutation p.R352K 0.05 deleterious(0) probably_damaging(0.996) TCGA-12-0619-01 16 72184650 72184650 C T PMFBP1 Missense_Mutation p.A165T 0.40 deleterious(0.03) possibly_damaging(0.469) TCGA-12-0619-01 17 12655804 12655804 G A MYOCD Missense_Mutation p.R400Q 0.05 deleterious(0) probably_damaging(0.999) TCGA-12-0619-01 17 39019850 39019850 G A KRT12 Missense_Mutation p.R328C 0.59 deleterious(0) probably_damaging(0.964) TCGA-12-0619-01 17 48275131 48275131 G A COL1A1 Nonsense_Mutation p.R220* 0.36 TCGA-12-0619-01 17 67098976 67098976 C A ABCA6 Missense_Mutation p.K958N 0.40 deleterious(0.02) probably_damaging(0.985) TCGA-12-0619-01 17 71426663 71426663 G A SDK2 Nonsense_Mutation p.R524* 0.05 TCGA-12-0619-01 17 7578440 7578440 T C TP53 Missense_Mutation p.K164E 0.69 deleterious(0) probably_damaging(0.999) TCGA-12-0619-01 18 34853005 34853005 G A CELF4 Missense_Mutation p.A308V 0.37 tolerated(0.73) benign(0.433) TCGA-12-0619-01 19 17463158 17463158 G T PLVAP 3'UTR 0.30 TCGA-12-0619-01 19 17679388 17679388 C T COLGALT1 Missense_Mutation p.P232L 0.23 deleterious(0) probably_damaging(0.984) TCGA-12-0619-01 19 46318327 46318327 C T RSPH6A Silent p.L36L 0.49 TCGA-12-0619-01 19 51205808 51205808 G A SHANK1 Missense_Mutation p.P555S 0.48 possibly_damaging(0.857) TCGA-12-0619-01 19 51274077 51274077 C T GPR32 Missense_Mutation p.R74C 0.45 tolerated(0.06) benign(0.262) TCGA-12-0619-01 19 54947301 54947304 TCTA - TTYH1 Frame_Shift_Del p.E436Pfs*34 0.54 TCGA-12-0619-01 19 56047417 56047417 C T SBK2 Missense_Mutation p.R82H 0.11 tolerated(0.07) benign(0.095) TCGA-12-0619-01 1 235860518 235860518 T C LYST Missense_Mutation p.S3477G 0.26 tolerated(0.18) probably_damaging(0.965) TCGA-12-0619-01 1 237890471 237890471 C T RYR2 Missense_Mutation p.R3604W 0.42 probably_damaging(0.997) TCGA-12-0619-01 1 29602053 29602053 G A PTPRU Missense_Mutation p.R413H 0.34 deleterious(0) probably_damaging(0.996) TCGA-12-0619-01 1 36788646 36788647 - G EVA1B 5'UTR 0.41 TCGA-12-0619-01 1 47282838 47282838 C T CYP4B1 Missense_Mutation p.R398W 0.42 deleterious(0.01) benign(0.109) TCGA-12-0619-01 20 30672225 30672225 G A HCK Silent p.S238S 0.46 TCGA-12-0619-01 20 43254307 43254307 G A ADA Silent p.D127D 0.42 TCGA-12-0619-01 22 20458191 20458191 G A RIMBP3 Silent p.G1037G 0.18 TCGA-12-0619-01 22 37326752 37326752 G A CSF2RB Missense_Mutation p.G298S 0.53 tolerated(0.59) benign(0.043) TCGA-12-0619-01 3 179137188 179137189 - G GNB4 Frame_Shift_Ins p.R68Qfs*17 0.32 TCGA-12-0619-01 3 185823619 185823619 G A ETV5 Silent p.V13V 0.37 TCGA-12-0619-01 3 38755494 38755494 G A SCN10A Silent p.R1253R 0.31 TCGA-12-0619-01 3 38913127 38913128 - C SCN11A Frame_Shift_Ins p.L1190Afs*20 0.24 TCGA-12-0619-01 4 141580777 141580777 C T TBC1D9 Missense_Mutation p.R629H 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-12-0619-01 4 158284178 158284178 C T GRIA2 Silent p.I878I 0.25 TCGA-12-0619-01 4 1725208 1725208 C T TACC3 Silent p.C20C 0.06 TCGA-12-0619-01 5 125821443 125821443 A T GRAMD3 Missense_Mutation p.I361F 0.36 deleterious(0.01) possibly_damaging(0.461) TCGA-12-0619-01 5 13753418 13753418 C G DNAH5 Missense_Mutation p.R3599P 0.34 possibly_damaging(0.767) TCGA-12-0619-01 5 140236992 140236992 G A PCDHA10 Silent p.A453A 0.41 TCGA-12-0619-01 5 140475875 140475875 C A PCDHB2 Missense_Mutation p.P501T 0.35 deleterious_low_confidence(0.02) benign(0.178) TCGA-12-0619-01 5 31468080 31468080 G A DROSHA Missense_Mutation p.R778C 0.40 deleterious(0.02) possibly_damaging(0.649) TCGA-12-0619-01 5 56160697 56160697 C T MAP3K1 Missense_Mutation p.P324L 0.32 deleterious(0) probably_damaging(0.999) TCGA-12-0619-01 6 41652304 41652304 G C TFEB 3'UTR 0.08 TCGA-12-0619-01 6 46856078 46856078 T C GPR116 Missense_Mutation p.T108A 0.35 deleterious(0) possibly_damaging(0.844) TCGA-12-0619-01 6 87725312 87725312 G A HTR1E Missense_Mutation p.R87H 0.42 tolerated(0.06) benign(0.329) TCGA-12-0619-01 7 127254980 127254980 C T PAX4 Missense_Mutation p.R97H 0.26 tolerated(0.06) benign(0.024) TCGA-12-0619-01 7 131872333 131872333 C T PLXNA4 Missense_Mutation p.G964R 0.21 deleterious(0) probably_damaging(1) TCGA-12-0619-01 7 26778465 26778465 G A SKAP2 Missense_Mutation p.R140W 0.25 deleterious(0) probably_damaging(0.999) TCGA-12-0619-01 7 4169639 4169639 G A SDK1 Missense_Mutation p.V1347M 0.25 deleterious(0) possibly_damaging(0.792) TCGA-12-0619-01 7 50097662 50097662 A G ZPBP Missense_Mutation p.I137T 0.21 tolerated(0.07) benign(0.186) TCGA-12-0619-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.14 deleterious(0) possibly_damaging(0.75) TCGA-12-0619-01 7 77256938 77256938 A G PTPN12 Missense_Mutation p.M648V 0.26 deleterious(0.04) benign(0.004) TCGA-12-0619-01 9 131233667 131233667 C T ODF2 Silent p.H167H 0.10 TCGA-12-0619-01 9 133540113 133540113 G A PRDM12 Missense_Mutation p.A25T 0.50 deleterious(0.01) benign(0.058) TCGA-12-0619-01 9 133540124 133540124 C T PRDM12 Silent p.I28I 0.50 TCGA-12-0619-01 9 138379880 138379880 G C PPP1R26 Missense_Mutation p.R1175T 0.14 tolerated(0.57) possibly_damaging(0.765) TCGA-12-0619-01 X 141291741 141291741 G T MAGEC2 Missense_Mutation p.N11K 0.82 tolerated_low_confidence(0.13) possibly_damaging(0.832) TCGA-12-0619-01 X 149963729 149963729 T C CD99L2 Missense_Mutation p.D127G 0.22 tolerated(0.06) benign(0.022) TCGA-12-0619-01 X 86887278 86887278 C A KLHL4 Missense_Mutation p.R465S 0.72 deleterious(0) probably_damaging(0.969) TCGA-12-0688-01 11 102825250 102825250 G A MMP13 Missense_Mutation p.P150S 0.40 deleterious(0.02) probably_damaging(0.974) TCGA-12-0688-01 11 123886818 123886818 C T OR10G4 Silent p.D179D 0.33 TCGA-12-0688-01 11 59828736 59828736 C A MS4A3 Missense_Mutation p.Q35K 0.38 tolerated(0.28) benign(0.015) TCGA-12-0688-01 11 62749352 62749352 C A SLC22A6 Silent p.L253L 0.07 TCGA-12-0688-01 12 121735496 121735496 G A CAMKK2 5'UTR 0.34 TCGA-12-0688-01 12 123900263 123900263 C A RILPL2 3'UTR 0.40 TCGA-12-0688-01 12 13061399 13061399 C T GPRC5A Silent p.L72L 0.41 TCGA-12-0688-01 12 14599967 14599967 G T ATF7IP Missense_Mutation p.D659Y 0.40 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-12-0688-01 14 64634098 64634098 C T SYNE2 Missense_Mutation p.R5585C 0.40 probably_damaging(0.941) TCGA-12-0688-01 14 75528387 75528387 C A ACYP1 Intron 0.39 TCGA-12-0688-01 15 53889439 53889439 C T WDR72 Silent p.A995A 0.38 TCGA-12-0688-01 16 84224773 84224773 C T ADAD2 5'UTR 0.42 TCGA-12-0688-01 17 38498818 38498818 C T RARA Intron 0.28 TCGA-12-0688-01 17 42152338 42152338 C A G6PC3 Missense_Mutation p.R140S 0.07 tolerated(0.42) benign(0.19) TCGA-12-0688-01 18 12794472 12794472 T - PTPN2 Frame_Shift_Del p.K351Nfs*18 0.27 TCGA-12-0688-01 18 19762971 19762971 T A GATA6 Missense_Mutation p.N529K 0.38 tolerated(0.29) benign(0.224) TCGA-12-0688-01 18 25591942 25591942 A C CDH2 Silent p.V138V 0.41 TCGA-12-0688-01 18 9516893 9516893 A G RALBP1 Missense_Mutation p.S99G 0.40 deleterious(0.01) benign(0.314) TCGA-12-0688-01 19 1113547 1113547 T C SBNO2 Missense_Mutation p.Q745R 0.38 deleterious(0) benign(0.102) TCGA-12-0688-01 19 14640375 14640375 G T TECR 5'UTR 0.27 TCGA-12-0688-01 19 15795890 15795890 C T CYP4F12 Missense_Mutation p.T333M 0.25 deleterious(0) probably_damaging(0.995) TCGA-12-0688-01 19 2833912 2833912 A T ZNF554 Missense_Mutation p.N227Y 0.30 tolerated(0.09) possibly_damaging(0.462) TCGA-12-0688-01 19 36019170 36019170 C T SBSN Missense_Mutation p.R5H 0.06 tolerated(0.58) unknown(0) TCGA-12-0688-01 19 40380305 40380305 G A FCGBP Silent p.F3670F 0.20 TCGA-12-0688-01 19 53453300 53453300 T C ZNF816 Silent p.Q576Q 0.29 TCGA-12-0688-01 19 7591685 7591685 G A MCOLN1 Silent p.A148A 0.24 TCGA-12-0688-01 19 7832494 7832494 C T CLEC4M Silent p.D343D 0.22 TCGA-12-0688-01 1 120539904 120539904 C - NOTCH2 Frame_Shift_Del p.G156Efs*240 0.25 TCGA-12-0688-01 1 152193158 152193158 G A HRNR Missense_Mutation p.S316L 0.04 unknown(0) TCGA-12-0688-01 1 152551929 152551929 G A LCE3D 3'UTR 0.47 TCGA-12-0688-01 1 152883944 152883944 A C IVL Silent p.P557P 0.36 TCGA-12-0688-01 1 17699701 17699701 G A PADI6 RNA 0.39 TCGA-12-0688-01 1 178745882 178745882 G C RALGPS2 5'UTR 0.37 TCGA-12-0688-01 1 248737870 248737870 G - OR2T34 Frame_Shift_Del p.M64Cfs*18 0.20 TCGA-12-0688-01 1 248845184 248845184 T C OR14I1 Missense_Mutation p.Q141R 0.38 tolerated(0.12) benign(0.192) TCGA-12-0688-01 20 35835810 35835810 T C RPN2 Silent p.P275P 0.23 TCGA-12-0688-01 20 45194937 45194937 G A SLC13A3 Silent p.I475I 0.28 TCGA-12-0688-01 20 49626233 49626233 C G KCNG1 Missense_Mutation p.D215H 0.16 deleterious(0.02) probably_damaging(1) TCGA-12-0688-01 21 47532419 47532419 C T COL6A2 Silent p.N214N 0.31 TCGA-12-0688-01 22 35789737 35789737 G A HMOX1 3'UTR 0.44 TCGA-12-0688-01 2 58373508 58373508 G A VRK2 Missense_Mutation p.E361K 0.33 tolerated(0.23) benign(0.004) TCGA-12-0688-01 3 105400636 105400636 A G CBLB Missense_Mutation p.L743P 0.32 tolerated_low_confidence(0.16) benign(0.184) TCGA-12-0688-01 3 111632481 111632481 C T PHLDB2 Missense_Mutation p.P551S 0.35 tolerated(0.22) benign(0.005) TCGA-12-0688-01 3 121350572 121350572 G A HCLS1 3'UTR 0.53 TCGA-12-0688-01 3 125725810 125725810 C T SLC41A3 Intron 0.37 TCGA-12-0688-01 3 128757682 128757682 G A EFCC1 Silent p.S533S 0.34 TCGA-12-0688-01 3 155198569 155198569 C A PLCH1 3'UTR 0.46 TCGA-12-0688-01 3 196388089 196388089 C T NRROS Silent p.S525S 0.40 TCGA-12-0688-01 4 110908980 110908980 T C EGF Silent p.L858L 0.39 TCGA-12-0688-01 4 15964315 15964315 C T FGFBP2 Silent p.G146G 0.33 TCGA-12-0688-01 4 68449405 68449405 T C STAP1 Missense_Mutation p.I215T 0.12 tolerated(0.12) possibly_damaging(0.857) TCGA-12-0688-01 4 96761326 96761326 G A PDHA2 Missense_Mutation p.V9M 0.45 tolerated(0.12) benign(0.086) TCGA-12-0688-01 5 1217004 1217004 G A SLC6A19 Missense_Mutation p.A373T 0.38 tolerated(0.51) benign(0.005) TCGA-12-0688-01 5 153065877 153065877 C T GRIA1 Silent p.D384D 0.31 TCGA-12-0688-01 5 180048603 180048603 G A FLT4 Silent p.C653C 0.52 TCGA-12-0688-01 5 67591086 67591086 A G PIK3R1 Missense_Mutation p.D560G 0.37 deleterious(0) probably_damaging(0.977) TCGA-12-0688-01 5 70672147 70672147 G A RP11-136K7.2 Intron 0.46 TCGA-12-0688-01 6 101163262 101163262 A C ASCC3 Intron 0.76 TCGA-12-0688-01 6 110567207 110567207 T G METTL24 Missense_Mutation p.D348A 0.39 tolerated(0.36) benign(0.004) TCGA-12-0688-01 6 161006177 161006177 C T LPA Missense_Mutation p.R1397Q 0.35 tolerated(0.16) benign(0.037) TCGA-12-0688-01 6 29407979 29407979 C T OR10C1 Missense_Mutation p.R63C 0.40 tolerated(0.05) benign(0.005) TCGA-12-0688-01 6 35747188 35747188 C A CLPSL2 Silent p.S88S 0.45 TCGA-12-0688-01 6 397159 397159 G A IRF4 Missense_Mutation p.V182I 0.39 tolerated(0.36) benign(0.018) TCGA-12-0688-01 6 44229489 44229489 C T NFKBIE Missense_Mutation p.D328N 0.38 tolerated(1) benign(0.04) TCGA-12-0688-01 6 54806091 54806091 G A FAM83B Silent p.K774K 0.41 TCGA-12-0688-01 7 148112574 148112574 C T CNTNAP2 Missense_Mutation p.R1288C 0.23 deleterious(0) benign(0.143) TCGA-12-0688-01 7 21550871 21550871 A G SP4 Missense_Mutation p.N780S 0.26 tolerated_low_confidence(0.16) possibly_damaging(0.622) TCGA-12-0688-01 7 2580983 2580983 G A BRAT1 Missense_Mutation p.R424W 0.24 deleterious(0) probably_damaging(1) TCGA-12-0688-01 7 32091191 32091191 T C PDE1C Intron 0.20 TCGA-12-0688-01 7 65554649 65554649 C G ASL Silent p.L343L 0.29 TCGA-12-0688-01 8 105360771 105360771 C T DCSTAMP Intron 0.36 TCGA-12-0688-01 8 144681263 144681263 G A TIGD5 Missense_Mutation p.G397D 0.15 deleterious(0) probably_damaging(0.999) TCGA-12-0688-01 8 144808805 144808805 G A FAM83H Silent p.S942S 0.31 TCGA-12-0688-01 8 52321474 52321474 C A PXDNL Nonsense_Mutation p.E904* 0.28 TCGA-12-0688-01 9 104357284 104357284 G A GRIN3A Intron 0.09 TCGA-12-0688-01 9 125424265 125424265 A G OR1L1 Missense_Mutation p.T91A 0.43 tolerated(0.31) benign(0.003) TCGA-12-0688-01 9 140201420 140201420 C T EXD3 Silent p.P871P 0.63 TCGA-12-0688-01 9 40702725 40702725 G A SPATA31A3 Missense_Mutation p.E128K 0.35 tolerated(1) benign(0) TCGA-12-0688-01 9 73399100 73399100 C T TRPM3 Missense_Mutation p.V357M 0.26 deleterious(0) possibly_damaging(0.903) TCGA-12-0688-01 9 94486082 94486082 C T ROR2 Silent p.Q898Q 0.40 TCGA-12-0688-01 X 137785220 137785220 G A FGF13 Nonsense_Mutation p.R120* 0.69 TCGA-12-0692-01 10 99664517 99664517 C T CRTAC1 Missense_Mutation p.R302H 0.79 tolerated(0.24) probably_damaging(0.952) TCGA-12-0692-01 11 100211381 100211382 - GT CNTN5 Frame_Shift_Ins 0.28 TCGA-12-0692-01 11 3849147 3849147 C T RHOG Silent p.Q74Q 0.05 TCGA-12-0692-01 11 4790709 4790709 C A OR51F1 Missense_Mutation p.G147C 0.13 deleterious(0.01) possibly_damaging(0.654) TCGA-12-0692-01 11 62554793 62554793 A C TAF6L 3'UTR 0.40 TCGA-12-0692-01 11 68315674 68315674 T G PPP6R3 Splice_Site p.X184_splice 0.45 TCGA-12-0692-01 11 82880169 82880169 A T PCF11 Missense_Mutation p.D931V 0.41 deleterious(0.02) benign(0.009) TCGA-12-0692-01 12 130847606 130847606 A G PIWIL1 Silent p.V704V 0.55 TCGA-12-0692-01 12 21965043 21965043 G T ABCC9 Missense_Mutation p.T1384K 0.43 deleterious(0.01) possibly_damaging(0.786) TCGA-12-0692-01 12 5908716 5908716 G A ANO2 Missense_Mutation p.R334C 0.61 tolerated(0.07) probably_damaging(0.999) TCGA-12-0692-01 13 114507939 114507939 G A TMEM255B Missense_Mutation p.A251T 0.39 tolerated(0.7) benign(0.01) TCGA-12-0692-01 13 28597589 28597589 T A FLT3 Missense_Mutation p.K772N 0.47 deleterious(0.04) possibly_damaging(0.858) TCGA-12-0692-01 14 21238424 21238424 T G EDDM3B Missense_Mutation p.L39V 0.48 deleterious(0.01) probably_damaging(0.987) TCGA-12-0692-01 14 25042969 25042969 G A CTSG Silent p.I214I 0.37 TCGA-12-0692-01 14 50802891 50802891 A G CDKL1 Intron 0.82 TCGA-12-0692-01 14 94394937 94394937 C T FAM181A Silent p.N164N 0.09 TCGA-12-0692-01 15 34528395 34528395 T C SLC12A6 Silent p.Q1016Q 0.41 TCGA-12-0692-01 16 20974846 20974846 A T DNAH3 Missense_Mutation p.W3454R 0.16 tolerated(0.24) benign(0) TCGA-12-0692-01 16 29755545 29755545 C T C16orf54 3'UTR 0.47 TCGA-12-0692-01 16 30748842 30748842 G C SRCAP Missense_Mutation p.C2494S 0.56 unknown(0) TCGA-12-0692-01 16 30748845 30748845 C G SRCAP Missense_Mutation p.S2495C 0.54 unknown(0) TCGA-12-0692-01 16 31429674 31429674 G T ITGAD Missense_Mutation p.R890M 0.33 deleterious(0) probably_damaging(0.916) TCGA-12-0692-01 16 52472924 52472924 T C TOX3 3'UTR 0.25 TCGA-12-0692-01 16 68288909 68288909 G A PLA2G15 Silent p.L124L 0.36 TCGA-12-0692-01 17 20363749 20363749 G C LGALS9B Missense_Mutation p.P16R 0.37 deleterious(0) probably_damaging(1) TCGA-12-0692-01 17 3651273 3651273 C T ITGAE Missense_Mutation p.V700I 0.49 tolerated(0.29) benign(0.131) TCGA-12-0692-01 17 47115627 47115627 C T IGF2BP1 Missense_Mutation p.R167C 0.44 tolerated(0.06) benign(0.022) TCGA-12-0692-01 19 14730162 14730162 T A EMR3 3'UTR 0.11 TCGA-12-0692-01 19 15198267 15198267 C T OR1I1 Missense_Mutation p.R131C 0.42 deleterious(0) possibly_damaging(0.849) TCGA-12-0692-01 19 53079263 53079263 T G ZNF701 Missense_Mutation p.L110R 0.31 deleterious(0) probably_damaging(0.997) TCGA-12-0692-01 19 56388509 56388509 G A NLRP4 Silent p.T891T 0.37 TCGA-12-0692-01 19 6669978 6669978 C A TNFSF14 Missense_Mutation p.V35L 0.04 tolerated(0.54) benign(0.001) TCGA-12-0692-01 19 9579010 9579010 C T ZNF560 Missense_Mutation p.A205T 0.52 tolerated(0.2) possibly_damaging(0.811) TCGA-12-0692-01 1 10493980 10493980 C T APITD1 Nonsense_Mutation p.Q45* 0.40 TCGA-12-0692-01 1 1309242 1309242 G A AURKAIP1 Missense_Mutation p.A180V 0.04 deleterious(0) possibly_damaging(0.878) TCGA-12-0692-01 1 152538275 152538275 A G LCE3E 3'UTR 0.09 TCGA-12-0692-01 1 155792117 155792117 T G GON4L Missense_Mutation p.Q283P 0.47 deleterious(0.01) benign(0.293) TCGA-12-0692-01 1 161993080 161993080 G A OLFML2B Silent p.N47N 0.21 TCGA-12-0692-01 1 183514093 183514093 C T SMG7 Silent p.P626P 0.39 TCGA-12-0692-01 1 196884097 196884097 A C CFHR4 Missense_Mutation p.K456Q 0.42 tolerated(0.29) benign(0.403) TCGA-12-0692-01 1 228612870 228612870 G A HIST3H3 Missense_Mutation p.R53C 0.43 deleterious_low_confidence(0) possibly_damaging(0.74) TCGA-12-0692-01 20 2097899 2097899 C T STK35 Missense_Mutation p.R494C 0.35 deleterious(0.02) probably_damaging(0.953) TCGA-12-0692-01 20 40043955 40043955 T C CHD6 Silent p.G2270G 0.06 TCGA-12-0692-01 20 43995683 43995683 C T SYS1 Silent p.I133I 0.06 TCGA-12-0692-01 20 5925484 5925485 TA - TRMT6 Frame_Shift_Del p.I111Kfs*9 0.25 TCGA-12-0692-01 22 24109563 24109563 G T CHCHD10 Missense_Mutation p.Q87K 0.13 tolerated(0.22) benign(0.4) TCGA-12-0692-01 22 37326752 37326752 G A CSF2RB Missense_Mutation p.G298S 0.05 tolerated(0.59) benign(0.043) TCGA-12-0692-01 22 40283548 40283548 G A ENTHD1 Missense_Mutation p.R69C 0.42 deleterious(0) probably_damaging(1) TCGA-12-0692-01 22 42524294 42524294 C T CYP2D6 Missense_Mutation p.R242H 0.26 tolerated(0.12) benign(0.015) TCGA-12-0692-01 2 116593731 116593731 A G DPP10 Splice_Site p.X655_splice 0.50 TCGA-12-0692-01 2 178990756 178990756 T C RBM45 Silent p.N426N 0.09 TCGA-12-0692-01 2 207169709 207169709 C T ZDBF2 Missense_Mutation p.H153Y 0.36 tolerated(0.46) benign(0.152) TCGA-12-0692-01 2 215609857 215609857 C - BARD1 Frame_Shift_Del p.A613Qfs*6 0.38 TCGA-12-0692-01 2 53941692 53941692 G A ASB3 Missense_Mutation p.T305I 0.03 deleterious(0) probably_damaging(0.999) TCGA-12-0692-01 3 124053259 124053259 C T KALRN Missense_Mutation p.R520W 0.43 deleterious(0) unknown(0) TCGA-12-0692-01 3 135870091 135870091 A T MSL2 Missense_Mutation p.S544R 0.37 deleterious(0.04) possibly_damaging(0.476) TCGA-12-0692-01 3 39225931 39225931 G T XIRP1 Missense_Mutation p.S1669Y 0.44 deleterious(0) possibly_damaging(0.879) TCGA-12-0692-01 3 49156674 49156674 C A USP19 5'UTR 0.06 TCGA-12-0692-01 4 175898213 175898213 G A ADAM29 Missense_Mutation p.A513T 0.43 deleterious(0) probably_damaging(0.982) TCGA-12-0692-01 4 189060967 189060967 G A TRIML1 Silent p.V85V 0.09 TCGA-12-0692-01 4 68776932 68776932 G A TMPRSS11A 3'UTR 0.60 TCGA-12-0692-01 4 74361147 74361147 G A AFM Missense_Mutation p.A397T 0.40 deleterious(0.03) possibly_damaging(0.644) TCGA-12-0692-01 4 94316790 94316790 T G GRID2 Missense_Mutation p.N426K 0.08 deleterious(0.01) possibly_damaging(0.864) TCGA-12-0692-01 5 140769313 140769313 C T PCDHGB4 Missense_Mutation p.T621M 0.39 deleterious(0) probably_damaging(0.999) TCGA-12-0692-01 5 160061402 160061402 C T ATP10B Missense_Mutation p.R447H 0.49 deleterious(0) probably_damaging(0.992) TCGA-12-0692-01 5 59064081 59064081 T G PDE4D Intron 0.06 TCGA-12-0692-01 6 167754816 167754816 G C TTLL2 Silent p.V476V 0.30 TCGA-12-0692-01 6 49928111 49928111 C T DEFB114 Missense_Mutation p.R35H 0.69 tolerated_low_confidence(0.68) benign(0) TCGA-12-0692-01 6 74475666 74475666 G A CD109 Missense_Mutation p.R374H 0.46 tolerated(0.08) benign(0.022) TCGA-12-0692-01 7 116960726 116960726 C T WNT2 Missense_Mutation p.V69M 0.28 deleterious(0.04) benign(0.025) TCGA-12-0692-01 7 23239787 23239787 G A NUPL2 Missense_Mutation p.G232D 0.27 deleterious(0.01) probably_damaging(0.971) TCGA-12-0692-01 7 23825130 23825130 C T STK31 Nonsense_Mutation p.R728* 0.25 TCGA-12-0692-01 7 618975 618975 G A PRKAR1B Missense_Mutation p.A270V 0.06 deleterious(0.03) possibly_damaging(0.454) TCGA-12-0692-01 8 23709003 23709003 G A STC1 Silent p.N101N 0.42 TCGA-12-0692-01 8 35407016 35407016 G C UNC5D Missense_Mutation p.D104H 0.09 deleterious(0) probably_damaging(0.965) TCGA-12-0692-01 9 116811355 116811355 C T ZNF618 Silent p.S498S 0.46 TCGA-12-0692-01 9 138714648 138714648 G A CAMSAP1 Missense_Mutation p.P620L 0.48 tolerated(0.72) benign(0.004) TCGA-12-0692-01 9 27217701 27217701 C T TEK Missense_Mutation p.R1003C 0.29 deleterious(0) probably_damaging(1) TCGA-12-0692-01 X 118108897 118108897 C T LONRF3 Missense_Mutation p.R52W 0.13 deleterious_low_confidence(0.01) possibly_damaging(0.487) TCGA-12-0692-01 X 119388318 119388318 G A ZBTB33 Missense_Mutation p.V350I 0.41 tolerated(0.14) probably_damaging(0.99) TCGA-12-0692-01 X 123176479 123176480 CT G STAG2 Frame_Shift_Del p.T149Rfs*34 0.26 TCGA-12-0692-01 X 153033075 153033075 C T PLXNB3 Missense_Mutation p.R288C 0.33 deleterious(0) probably_damaging(0.996) TCGA-12-0692-01 X 153588484 153588484 C T FLNA Missense_Mutation p.G1227R 0.06 deleterious(0) probably_damaging(0.984) TCGA-12-0692-01 X 153694763 153694763 C T PLXNA3 Silent p.S948S 0.39 TCGA-12-0692-01 X 153735136 153735136 G A FAM3A 3'UTR 0.51 TCGA-12-0692-01 X 24759540 24759540 C T POLA1 Silent p.A749A 0.39 TCGA-12-0692-01 X 70602866 70602866 G A TAF1 Missense_Mutation p.R620Q 0.18 tolerated(0.12) benign(0.021) TCGA-12-0692-01 X 84362599 84362599 G A SATL1 Missense_Mutation p.P459L 0.45 tolerated(0.22) benign(0.423) TCGA-12-0692-01 X 91132676 91132676 C G PCDH11X Missense_Mutation p.N479K 0.35 deleterious(0) probably_damaging(1) TCGA-12-0692-01 X 91132704 91132704 A T PCDH11X Missense_Mutation p.S489C 0.36 deleterious(0.04) probably_damaging(0.998) TCGA-12-0692-01 X 9656243 9656243 G A TBL1X Missense_Mutation p.V182I 0.60 tolerated(0.31) benign(0.002) TCGA-12-0821-01 10 103557792 103557792 A C MGEA5 Nonsense_Mutation p.Y643* 0.83 TCGA-12-0821-01 10 89550116 89550116 G A ATAD1 Silent p.I111I 0.68 TCGA-12-0821-01 11 17757795 17757795 G T KCNC1 Silent p.V82V 0.08 TCGA-12-0821-01 11 18554017 18554017 A G UEVLD Silent p.N422N 0.43 TCGA-12-0821-01 11 32955067 32955067 C G QSER1 Missense_Mutation p.L626V 0.49 tolerated(0.07) benign(0.052) TCGA-12-0821-01 11 5373426 5373426 G A OR51B6 Missense_Mutation p.G230E 0.42 tolerated(1) benign(0.001) TCGA-12-0821-01 11 59211078 59211078 G T OR5A1 Missense_Mutation p.R146L 0.43 tolerated(0.26) benign(0.025) TCGA-12-0821-01 11 78380644 78380644 C A TENM4 Missense_Mutation p.G2249V 0.07 deleterious(0.04) probably_damaging(0.999) TCGA-12-0821-01 12 118490112 118490113 - A WSB2 Intron 0.38 TCGA-12-0821-01 12 85450302 85450302 T C LRRIQ1 Silent p.D577D 0.41 TCGA-12-0821-01 13 111132630 111132630 G T COL4A2 Missense_Mutation p.G884V 0.43 possibly_damaging(0.63) TCGA-12-0821-01 13 26411335 26411335 T A ATP8A2 Missense_Mutation p.I930N 0.42 deleterious(0) probably_damaging(1) TCGA-12-0821-01 13 28880897 28880897 C T FLT1 Missense_Mutation p.D1245N 0.44 deleterious(0.01) possibly_damaging(0.676) TCGA-12-0821-01 13 29004213 29004213 C T FLT1 Silent p.K360K 0.45 TCGA-12-0821-01 13 41486782 41486782 T C SUGT1P3 RNA 0.36 TCGA-12-0821-01 14 68247033 68247033 C T ZFYVE26 Nonsense_Mutation p.W1533* 0.79 TCGA-12-0821-01 14 92588104 92588104 G C NDUFB1 Missense_Mutation p.H6Q 0.74 deleterious_low_confidence(0.02) benign(0.402) TCGA-12-0821-01 14 94849084 94849084 G T SERPINA1 Nonsense_Mutation p.S164* 0.10 TCGA-12-0821-01 15 43622424 43622425 GA - LCMT2 Frame_Shift_Del p.L88Rfs*63 0.13 TCGA-12-0821-01 15 54624283 54624283 T A UNC13C Missense_Mutation p.L1490M 0.73 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-12-0821-01 15 94899492 94899492 G T MCTP2 Missense_Mutation p.V378F 0.45 deleterious(0) possibly_damaging(0.858) TCGA-12-0821-01 16 71094452 71094452 G T HYDIN Missense_Mutation p.N828K 0.22 benign(0.084) TCGA-12-0821-01 16 71570968 71570968 C T CHST4 Missense_Mutation p.R130W 0.41 deleterious(0) probably_damaging(0.977) TCGA-12-0821-01 16 87448975 87448975 T G ZCCHC14 Splice_Site p.X325_splice 0.32 TCGA-12-0821-01 17 10531944 10531944 T A MYH3 3'UTR 0.43 TCGA-12-0821-01 17 19687216 19687216 C A ULK2 Missense_Mutation p.G752W 0.43 deleterious(0) probably_damaging(0.935) TCGA-12-0821-01 17 4542381 4542381 C G ALOX15 Silent p.R128R 0.38 TCGA-12-0821-01 19 10335607 10335607 C A S1PR2 5'UTR 0.06 TCGA-12-0821-01 19 11411902 11411902 C T TSPAN16 Missense_Mutation p.T123I 0.38 tolerated(0.24) benign(0.026) TCGA-12-0821-01 19 30934639 30934639 A G ZNF536 Missense_Mutation p.E57G 0.33 deleterious_low_confidence(0) benign(0.309) TCGA-12-0821-01 19 46094672 46094672 C T GPR4 Silent p.A151A 0.39 TCGA-12-0821-01 19 58385050 58385050 G A ZNF814 Missense_Mutation p.H570Y 0.13 deleterious(0) benign(0.211) TCGA-12-0821-01 1 12170201 12170201 T A TNFRSF8 Missense_Mutation p.S206T 0.07 tolerated(0.07) possibly_damaging(0.858) TCGA-12-0821-01 1 156811514 156811514 C T INSRR Missense_Mutation p.R1157H 0.46 deleterious(0) probably_damaging(1) TCGA-12-0821-01 1 158299678 158299678 C T CD1B Missense_Mutation p.V191I 0.43 tolerated(0.29) benign(0.002) TCGA-12-0821-01 1 158449688 158449688 C G OR10R2 Missense_Mutation p.F7L 0.33 tolerated(0.57) benign(0) TCGA-12-0821-01 1 19181287 19181287 C T TAS1R2 Missense_Mutation p.R226H 0.08 tolerated(0.09) benign(0.115) TCGA-12-0821-01 1 26515154 26515154 G A CNKSR1 Silent p.Q552Q 0.42 TCGA-12-0821-01 1 45553632 45553632 G A ZSWIM5 Silent p.H291H 0.49 TCGA-12-0821-01 1 47024163 47024163 C T MKNK1 3'UTR 0.65 TCGA-12-0821-01 1 78001682 78001682 C T AK5 Missense_Mutation p.P527S 0.38 tolerated(0.13) probably_damaging(0.928) TCGA-12-0821-01 1 85498465 85498465 C T MCOLN3 Missense_Mutation p.V216M 0.45 deleterious(0) benign(0.15) TCGA-12-0821-01 20 62172863 62172863 C T SRMS Missense_Mutation p.A353T 0.50 deleterious(0) probably_damaging(0.991) TCGA-12-0821-01 22 29440867 29440867 C T ZNRF3 Nonsense_Mutation p.R245* 0.78 TCGA-12-0821-01 22 40343103 40343103 G C GRAP2 5'UTR 0.77 TCGA-12-0821-01 2 113940791 113940791 C T PSD4 Missense_Mutation p.A253V 0.44 deleterious_low_confidence(0) benign(0.001) TCGA-12-0821-01 2 167056293 167056293 C T SCN9A Missense_Mutation p.R1608Q 0.44 deleterious(0.01) possibly_damaging(0.8) TCGA-12-0821-01 2 183703198 183703198 G A FRZB Missense_Mutation p.P246S 0.06 deleterious(0) probably_damaging(1) TCGA-12-0821-01 2 233346218 233346218 G A ECEL1 Missense_Mutation p.R663W 0.43 deleterious(0.01) possibly_damaging(0.907) TCGA-12-0821-01 2 74592698 74592698 G A DCTN1 Silent p.I991I 0.51 TCGA-12-0821-01 3 107096949 107096949 A C CCDC54 Missense_Mutation p.K172T 0.43 deleterious(0.04) possibly_damaging(0.866) TCGA-12-0821-01 3 142234329 142234329 A G ATR Missense_Mutation p.W1471R 0.46 deleterious(0.05) probably_damaging(0.94) TCGA-12-0821-01 3 155545968 155545968 T A SLC33A1 3'UTR 0.36 TCGA-12-0821-01 3 178916614 178916614 A G PIK3CA Translation_Start_Site p.M1? 0.86 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-12-0821-01 3 197350983 197350983 G A AC024560.3 Intron 0.55 TCGA-12-0821-01 3 38278405 38278405 T C OXSR1 Missense_Mutation p.F343L 0.47 tolerated(0.8) benign(0) TCGA-12-0821-01 3 46759087 46759087 A C PRSS50 Silent p.T49T 0.42 TCGA-12-0821-01 3 74420493 74420493 C T CNTN3 Missense_Mutation p.R171Q 0.47 deleterious(0) probably_damaging(1) TCGA-12-0821-01 3 95374049 95374049 C A MTHFD2P1 RNA 0.59 TCGA-12-0821-01 3 97983841 97983841 T C OR5H6 Missense_Mutation p.L238P 0.07 deleterious(0) probably_damaging(0.992) TCGA-12-0821-01 4 13543971 13543971 C G NKX3-2 Silent p.A216A 0.55 TCGA-12-0821-01 4 13543978 13543978 G A NKX3-2 Missense_Mutation p.S214F 0.58 deleterious(0) probably_damaging(1) TCGA-12-0821-01 4 166978363 166978363 G A TLL1 Missense_Mutation p.R583H 0.40 tolerated(1) benign(0.005) TCGA-12-0821-01 4 184580141 184580141 G C RWDD4 5'UTR 0.33 TCGA-12-0821-01 4 38698729 38698729 G T KLF3 Nonsense_Mutation p.E295* 0.38 TCGA-12-0821-01 4 9784657 9784657 G T DRD5 Missense_Mutation p.C335F 0.36 deleterious(0) probably_damaging(1) TCGA-12-0821-01 5 140011717 140011717 C T CD14 Silent p.S284S 0.24 TCGA-12-0821-01 5 167880985 167880985 G A WWC1 Silent p.E846E 0.36 TCGA-12-0821-01 5 23509113 23509113 G C PRDM9 5'UTR 0.54 TCGA-12-0821-01 5 89910651 89910651 G T GPR98 Splice_Site p.X8_splice 0.28 TCGA-12-0821-01 6 152461140 152461140 C T SYNE1 Missense_Mutation p.R8468H 0.37 benign(0.009) TCGA-12-0821-01 6 159653439 159653439 G A FNDC1 Missense_Mutation p.R632H 0.53 tolerated_low_confidence(0.11) unknown(0) TCGA-12-0821-01 6 30697825 30697826 TT - FLOT1 Frame_Shift_Del p.R410Tfs*34 0.09 TCGA-12-0821-01 6 76024397 76024397 C T FILIP1 Missense_Mutation p.R384Q 0.39 deleterious(0.04) possibly_damaging(0.476) TCGA-12-0821-01 6 90577200 90577200 G A CASP8AP2 RNA 0.41 TCGA-12-0821-01 6 90578026 90578026 C T CASP8AP2 RNA 0.09 TCGA-12-0821-01 7 100687031 100687031 G A MUC17 Missense_Mutation p.A4112T 0.30 unknown(0) TCGA-12-0821-01 7 113558442 113558442 T A PPP1R3A Nonsense_Mutation p.K204* 0.29 TCGA-12-0821-01 7 140453141 140453141 A T BRAF Silent p.A598A 0.33 TCGA-12-0821-01 7 23309680 23309680 C T GPNMB Silent p.L451L 0.33 TCGA-12-0821-01 7 30890151 30890151 A G FAM188B Silent p.R509R 0.30 TCGA-12-0821-01 8 108276567 108276567 T C ANGPT1 Silent p.K406K 0.44 TCGA-12-0821-01 8 17422587 17422587 G A SLC7A2 Missense_Mutation p.A677T 0.40 tolerated(0.4) benign(0.003) TCGA-12-0821-01 8 2832079 2832079 G A CSMD1 Silent p.G2878G 0.42 TCGA-12-0821-01 8 49833944 49833944 C G SNAI2 5'UTR 0.44 TCGA-12-0821-01 8 52733124 52733124 A C PCMTD1 Silent p.T287T 0.05 TCGA-12-0821-01 X 102339283 102339283 C G NXF3 Missense_Mutation p.W113S 0.12 deleterious(0) probably_damaging(0.991) TCGA-12-0821-01 X 117527112 117527112 G A WDR44 Missense_Mutation p.R235H 0.92 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-12-0821-01 X 123176497 123176497 T C STAG2 Splice_Site p.X154_splice 0.83 TCGA-12-1597-01 10 50285318 50285318 G A VSTM4 Missense_Mutation p.L194F 0.74 deleterious(0.04) probably_damaging(0.998) TCGA-12-1597-01 10 89717704 89717704 C - PTEN Frame_Shift_Del p.P244Lfs*12 0.47 TCGA-12-1597-01 11 114453106 114453106 C A NXPE4 Missense_Mutation p.R245M 0.48 deleterious(0) possibly_damaging(0.907) TCGA-12-1597-01 11 3249597 3249597 C T MRGPRE Missense_Mutation p.A144T 0.75 tolerated(0.11) probably_damaging(0.97) TCGA-12-1597-01 11 56086025 56086025 G A OR8K3 Missense_Mutation p.M81I 0.21 deleterious_low_confidence(0.02) benign(0.213) TCGA-12-1597-01 11 64557670 64557670 G A MAP4K2 Silent p.I746I 0.36 TCGA-12-1597-01 12 103246614 103246614 T A PAH Missense_Mutation p.K274M 0.34 deleterious(0.05) benign(0.086) TCGA-12-1597-01 12 53207484 53207484 G T KRT4 Missense_Mutation p.T120N 0.11 deleterious(0.01) possibly_damaging(0.843) TCGA-12-1597-01 12 55714593 55714593 G A OR6C1 Silent p.S70S 0.38 TCGA-12-1597-01 13 37580266 37580266 A C EXOSC8 Missense_Mutation p.Q120P 0.11 tolerated(0.12) benign(0.002) TCGA-12-1597-01 14 101452434 101452434 G A SNORD114-25 RNA 0.41 TCGA-12-1597-01 14 102276190 102276190 A G PPP2R5C Intron 0.50 TCGA-12-1597-01 14 45605251 45605251 G A FANCM Missense_Mutation p.R6K 0.38 deleterious(0.01) possibly_damaging(0.573) TCGA-12-1597-01 14 57858239 57858239 T G NAA30 Silent p.S188S 0.12 TCGA-12-1597-01 14 81610003 81610003 G T TSHR Missense_Mutation p.R534L 0.06 deleterious(0) possibly_damaging(0.785) TCGA-12-1597-01 14 94582172 94582172 C G IFI27 Missense_Mutation p.A56G 0.18 tolerated(0.09) benign(0.005) TCGA-12-1597-01 15 101592102 101592102 C T LRRK1 Missense_Mutation p.P1209L 0.07 deleterious(0) benign(0.167) TCGA-12-1597-01 15 42032290 42032290 C T MGA Missense_Mutation p.R1492C 0.16 deleterious(0.01) probably_damaging(0.962) TCGA-12-1597-01 16 51171034 51171034 C G SALL1 Missense_Mutation p.V1322L 0.32 deleterious(0.01) benign(0.166) TCGA-12-1597-01 16 56374784 56374784 C G GNAO1 Missense_Mutation p.I254M 0.44 deleterious(0) probably_damaging(0.986) TCGA-12-1597-01 16 87367838 87367838 G C FBXO31 Missense_Mutation p.R351G 0.17 deleterious(0.05) benign(0.241) TCGA-12-1597-01 17 10309497 10309497 G A MYH8 Intron 0.09 TCGA-12-1597-01 17 21208414 21208414 G A MAP2K3 Missense_Mutation p.D250N 0.03 deleterious(0.02) probably_damaging(0.927) TCGA-12-1597-01 17 21731067 21731067 C - UBBP4 Frame_Shift_Del p.K124Sfs*26 0.24 TCGA-12-1597-01 17 25974373 25974373 G A LGALS9 Missense_Mutation p.R279H 0.06 tolerated(0.1) probably_damaging(0.977) TCGA-12-1597-01 17 27977712 27977712 C A SSH2 Missense_Mutation p.A369S 0.11 deleterious(0.05) probably_damaging(0.976) TCGA-12-1597-01 17 65889772 65889775 GACT - BPTF Frame_Shift_Del p.T783Sfs*4 0.47 TCGA-12-1597-01 17 6929925 6929925 C T BCL6B Missense_Mutation p.R347C 0.37 deleterious(0) probably_damaging(0.985) TCGA-12-1597-01 17 74157723 74157723 G A RNF157 Missense_Mutation p.R320W 0.28 deleterious(0) probably_damaging(0.995) TCGA-12-1597-01 18 14478155 14478155 C T CXADRP3 RNA 0.41 TCGA-12-1597-01 18 46447857 46447857 G - SMAD7 Frame_Shift_Del p.P389Rfs*12 0.33 TCGA-12-1597-01 18 57022568 57022568 C A LMAN1 Missense_Mutation p.D152Y 0.09 deleterious(0) probably_damaging(1) TCGA-12-1597-01 19 36046636 36046636 C T ATP4A Missense_Mutation p.E650K 0.37 tolerated(0.11) probably_damaging(0.996) TCGA-12-1597-01 1 115828831 115828831 G A NGF Missense_Mutation p.H196Y 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-12-1597-01 1 158641934 158641934 C T SPTA1 Missense_Mutation p.R468H 0.18 deleterious(0) probably_damaging(0.951) TCGA-12-1597-01 1 16719954 16719954 G A SZRD1 Silent p.E111E 0.20 TCGA-12-1597-01 1 16757916 16757916 T A SPATA21 Intron 0.45 TCGA-12-1597-01 1 190067205 190067205 C T BRINP3 Silent p.A748A 0.39 TCGA-12-1597-01 1 204167422 204167422 G C GOLT1A 3'UTR 0.14 TCGA-12-1597-01 1 228466482 228466482 G A OBSCN Missense_Mutation p.A2747T 0.54 probably_damaging(0.999) TCGA-12-1597-01 1 248403138 248403138 A T OR2M4 Missense_Mutation p.K303M 0.10 deleterious(0.01) probably_damaging(0.968) TCGA-12-1597-01 1 248652116 248652116 C T OR2T5 Missense_Mutation p.A76V 0.10 tolerated(0.18) benign(0) TCGA-12-1597-01 1 33772995 33772995 C T A3GALT2 Missense_Mutation p.G132D 0.06 tolerated(0.07) probably_damaging(0.924) TCGA-12-1597-01 1 75038513 75038513 C G C1orf173 Missense_Mutation p.D961H 0.09 deleterious(0.02) benign(0.091) TCGA-12-1597-01 1 75055650 75055650 C A C1orf173 Missense_Mutation p.S614I 0.35 deleterious(0) possibly_damaging(0.897) TCGA-12-1597-01 20 50225158 50225158 T C ATP9A Missense_Mutation p.T882A 0.12 deleterious(0) possibly_damaging(0.78) TCGA-12-1597-01 20 61430922 61430922 G A MRGBP Missense_Mutation p.R181Q 0.19 deleterious(0.03) probably_damaging(0.953) TCGA-12-1597-01 21 46032293 46032293 C T KRTAP10-8 Silent p.D92D 0.46 TCGA-12-1597-01 22 39355652 39355652 G A APOBEC3A Silent p.S45S 0.34 TCGA-12-1597-01 22 43538975 43538975 G A MCAT Missense_Mutation p.A127V 0.32 tolerated(0.11) benign(0.185) TCGA-12-1597-01 2 107460248 107460248 C T ST6GAL2 Missense_Mutation p.M62I 0.49 possibly_damaging(0.576) TCGA-12-1597-01 2 179454762 179454762 C T TTN Missense_Mutation p.V20564I 0.37 TCGA-12-1597-01 2 179584862 179584862 A G TTN Missense_Mutation p.I7836T 0.47 TCGA-12-1597-01 2 1926184 1926184 C T MYT1L Missense_Mutation p.A453T 0.47 tolerated(0.14) benign(0.099) TCGA-12-1597-01 2 207173138 207173138 G A ZDBF2 Missense_Mutation p.V1296I 0.08 deleterious(0.01) benign(0.002) TCGA-12-1597-01 2 220150588 220150588 A G DNAJB2 3'UTR 0.38 TCGA-12-1597-01 2 220346370 220346370 G A SPEG Missense_Mutation p.A1845T 0.18 possibly_damaging(0.771) TCGA-12-1597-01 2 234360642 234360642 G A DGKD Missense_Mutation p.G734S 0.41 tolerated(0.25) benign(0.048) TCGA-12-1597-01 2 241569721 241569721 G A GPR35 Missense_Mutation p.V149M 0.14 deleterious(0) probably_damaging(0.919) TCGA-12-1597-01 2 242617899 242617899 G - DTYMK Frame_Shift_Del p.Q166Sfs*3 0.31 TCGA-12-1597-01 2 33810356 33810356 G A FAM98A Silent p.Y348Y 0.27 TCGA-12-1597-01 2 96957584 96957584 G A SNRNP200 Missense_Mutation p.R739W 0.23 deleterious(0) probably_damaging(0.998) TCGA-12-1597-01 3 49940449 49940449 G A MST1R Silent p.Y198Y 0.43 TCGA-12-1597-01 3 58145402 58145402 A C FLNB Missense_Mutation p.E2368A 0.38 tolerated(0.07) possibly_damaging(0.887) TCGA-12-1597-01 4 8605776 8605776 C T CPZ Silent p.Y190Y 0.47 TCGA-12-1597-01 5 113740368 113740368 C T KCNN2 Silent p.V272V 0.19 TCGA-12-1597-01 5 162932707 162932707 G A MAT2B Silent p.E5E 0.36 TCGA-12-1597-01 5 45262443 45262443 C T HCN1 Silent p.P751P 0.46 TCGA-12-1597-01 6 25819769 25819769 G A SLC17A1 Nonsense_Mutation p.R167* 0.29 TCGA-12-1597-01 6 28269724 28269724 G A PGBD1 Missense_Mutation p.C698Y 0.40 deleterious(0) probably_damaging(0.999) TCGA-12-1597-01 6 33663365 33663365 G A SBP1 Missense_Mutation p.A37V 0.42 unknown(0) TCGA-12-1597-01 7 113519263 113519263 A G PPP1R3A Silent p.N628N 0.28 TCGA-12-1597-01 7 142573411 142573411 G A TRPV6 Missense_Mutation p.T311M 0.28 deleterious(0) probably_damaging(0.993) TCGA-12-1597-01 7 143657660 143657660 C T OR2F1 Silent p.I199I 0.04 TCGA-12-1597-01 7 146741054 146741054 C T CNTNAP2 Missense_Mutation p.P153L 0.29 deleterious(0.03) benign(0.214) TCGA-12-1597-01 7 38370487 38370487 A G TRGV8 5'UTR 0.08 TCGA-12-1597-01 8 105263256 105263256 G A RIMS2 Silent p.P1232P 0.07 TCGA-12-1597-01 8 12946050 12946050 T C DLC1 Missense_Mutation p.Q1413R 0.37 deleterious(0.01) probably_damaging(0.945) TCGA-12-1597-01 8 145624415 145624415 G A CPSF1 Missense_Mutation p.P494L 0.12 tolerated(0.24) benign(0.012) TCGA-12-1597-01 8 39607192 39607192 A G ADAM2 Silent p.D623D 0.25 TCGA-12-1597-01 8 63985639 63985639 T C TTPA Silent p.K71K 0.06 TCGA-12-1597-01 8 91064212 91064212 T C DECR1 3'UTR 0.53 TCGA-12-1597-01 9 12693961 12693961 A G TYRP1 5'UTR 0.09 TCGA-12-1597-01 9 138594124 138594124 C A KCNT1 Missense_Mutation p.A7E 0.09 tolerated_low_confidence(0.08) benign(0.012) TCGA-12-1597-01 9 65507531 65507531 G A SPATA31A7 Missense_Mutation p.S95L 0.71 tolerated(0.75) benign(0) TCGA-12-1597-01 9 70999452 70999452 C A PGM5 Missense_Mutation p.P188Q 0.41 tolerated(0.14) benign(0.378) TCGA-12-1597-01 9 95362733 95362733 G T CENPP Intron 0.07 TCGA-12-1597-01 9 96079849 96079849 G A WNK2 Silent p.A2225A 0.27 TCGA-12-1597-01 X 100531023 100531023 C A TAF7L Missense_Mutation p.D417Y 0.10 deleterious(0.05) benign(0.071) TCGA-12-1597-01 X 153050273 153050273 A G SRPK3 Silent p.E439E 0.36 TCGA-12-1597-01 X 154294043 154294043 G A MTCP1 Nonsense_Mutation p.R43* 0.43 TCGA-12-1597-01 X 36103466 36103466 C T CHDC2 Missense_Mutation p.S151L 0.40 tolerated(0.14) benign(0.039) TCGA-12-1597-01 X 37028621 37028621 G T FAM47C Missense_Mutation p.S713I 0.39 tolerated(0.18) probably_damaging(0.947) TCGA-12-1597-01 X 50146548 50146548 C A DGKK RNA 0.09 TCGA-12-1597-01 X 70342412 70342412 G C MED12 Missense_Mutation p.V435L 0.52 probably_damaging(0.948) TCGA-12-1597-01 X 76711875 76711875 C T FGF16 Silent p.Y71Y 0.20 TCGA-12-1597-01 X 77264612 77264612 C T ATP7A Missense_Mutation p.T574M 0.41 deleterious(0) probably_damaging(0.981) TCGA-12-3649-01 10 17146591 17146591 C T CUBN Missense_Mutation p.G415D 0.44 deleterious(0) probably_damaging(0.976) TCGA-12-3649-01 10 63170497 63170497 G T TMEM26 Missense_Mutation p.N230K 0.55 tolerated(0.35) benign(0.012) TCGA-12-3649-01 10 89725042 89725042 A G PTEN Splice_Site p.X343_splice 0.61 TCGA-12-3649-01 11 124440668 124440668 C A OR8A1 Missense_Mutation p.T235N 0.38 deleterious(0.01) benign(0.217) TCGA-12-3649-01 11 3687643 3687643 G A CHRNA10 Silent p.C349C 0.28 TCGA-12-3649-01 11 4608268 4608268 G A OR52I2 Missense_Mutation p.V76M 0.29 tolerated(0.13) benign(0.041) TCGA-12-3649-01 11 4615416 4615416 G A OR52I1 Missense_Mutation p.V50M 0.09 tolerated(0.11) benign(0.014) TCGA-12-3649-01 11 5566723 5566723 T G OR52H1 Missense_Mutation p.N11H 0.32 deleterious(0) probably_damaging(0.999) TCGA-12-3649-01 11 5626645 5626645 C T TRIM6 Missense_Mutation p.R228W 0.25 deleterious(0) benign(0.349) TCGA-12-3649-01 11 5631406 5631406 G A TRIM6 Missense_Mutation p.A297T 0.32 tolerated(1) benign(0.003) TCGA-12-3649-01 11 63396687 63396687 G A ATL3 3'UTR 0.23 TCGA-12-3649-01 11 92714701 92714701 C T MTNR1B Silent p.D104D 0.40 TCGA-12-3649-01 12 120599767 120599767 A T GCN1L1 Silent p.P753P 0.33 TCGA-12-3649-01 12 19436597 19436597 G A PLEKHA5 Missense_Mutation p.R566Q 0.34 deleterious(0.02) probably_damaging(0.997) TCGA-12-3649-01 12 72030416 72030416 C G ZFC3H1 Missense_Mutation p.D652H 0.34 tolerated(0.15) benign(0.007) TCGA-12-3649-01 12 88388465 88388466 TA - C12orf50 Frame_Shift_Del p.I179Kfs*11 0.22 TCGA-12-3649-01 13 19751200 19751200 C T TUBA3C Missense_Mutation p.R308H 0.34 tolerated_low_confidence(0.06) benign(0.009) TCGA-12-3649-01 13 70681808 70681808 G T KLHL1 Missense_Mutation p.D8E 0.29 tolerated_low_confidence(1) probably_damaging(0.935) TCGA-12-3649-01 14 105612833 105612833 G A JAG2 Silent p.I866I 0.47 TCGA-12-3649-01 14 105618019 105618019 G A JAG2 Missense_Mutation p.P366L 0.41 deleterious(0.01) benign(0.01) TCGA-12-3649-01 14 72055814 72055814 G A SIPA1L1 Missense_Mutation p.E409K 0.46 deleterious(0.01) benign(0.03) TCGA-12-3649-01 14 74823988 74823988 A G VRTN Missense_Mutation p.S168G 0.36 tolerated(1) benign(0.079) TCGA-12-3649-01 14 90870850 90870850 A G CALM1 Missense_Mutation p.N138S 0.33 tolerated_low_confidence(0.05) benign(0.046) TCGA-12-3649-01 14 94700063 94700063 T A PPP4R4 Nonsense_Mutation p.L197* 0.35 TCGA-12-3649-01 14 94909543 94909543 G A SERPINA11 Missense_Mutation p.P313S 0.39 deleterious(0) probably_damaging(1) TCGA-12-3649-01 15 50494831 50494831 G A SLC27A2 Missense_Mutation p.C279Y 0.37 deleterious(0) probably_damaging(0.981) TCGA-12-3649-01 15 91312761 91312761 A T BLM Missense_Mutation p.N834Y 0.43 deleterious(0) probably_damaging(0.997) TCGA-12-3649-01 16 66950022 66950022 G T CDH16 Missense_Mutation p.P124T 0.40 deleterious(0) probably_damaging(0.946) TCGA-12-3649-01 16 71724459 71724459 G C PHLPP2 Missense_Mutation p.T191S 0.10 tolerated(0.16) benign(0.214) TCGA-12-3649-01 17 10533648 10533648 G A MYH3 Missense_Mutation p.A1805V 0.31 deleterious(0.01) probably_damaging(0.992) TCGA-12-3649-01 17 27939203 27939203 T A ANKRD13B Silent p.I390I 0.34 TCGA-12-3649-01 18 29787380 29787380 G A MEP1B Missense_Mutation p.R238Q 0.35 deleterious(0) probably_damaging(0.999) TCGA-12-3649-01 18 70209243 70209243 C T CBLN2 Silent p.A51A 0.37 TCGA-12-3649-01 19 13010749 13010749 G A GCDH 3'UTR 0.42 TCGA-12-3649-01 19 17086956 17086956 T C CPAMD8 Silent p.S635S 0.16 TCGA-12-3649-01 19 21606457 21606457 T C ZNF493 Silent p.I332I 0.35 TCGA-12-3649-01 19 35757850 35757850 C T LSR Missense_Mutation p.P423L 0.33 tolerated(0.37) benign(0.008) TCGA-12-3649-01 19 51986389 51986389 G A CEACAM18 Silent p.K325K 0.27 TCGA-12-3649-01 19 56704064 56704064 G A ZSCAN5B Nonsense_Mutation p.R120* 0.14 TCGA-12-3649-01 19 758162 758162 C T MISP Missense_Mutation p.R406C 0.11 deleterious(0.02) possibly_damaging(0.782) TCGA-12-3649-01 1 11249488 11249488 G T ANGPTL7 5'UTR 0.10 TCGA-12-3649-01 1 115256529 115256529 T A NRAS Missense_Mutation p.Q61L 0.34 deleterious(0) benign(0.109) TCGA-12-3649-01 1 145367751 145367751 A T NBPF10 Silent p.G3449G 0.24 TCGA-12-3649-01 1 158669760 158669760 C T OR6K2 Missense_Mutation p.R228H 0.38 deleterious(0.02) benign(0.052) TCGA-12-3649-01 1 168066138 168066138 C G GPR161 Missense_Mutation p.R256T 0.29 tolerated(0.4) benign(0.085) TCGA-12-3649-01 1 207644110 207644110 C A CR2 Silent p.L417L 0.28 TCGA-12-3649-01 1 235866229 235866229 G A LYST Nonsense_Mutation p.R3398* 0.31 TCGA-12-3649-01 1 237777418 237777418 G A RYR2 Missense_Mutation p.V1664I 0.53 benign(0.006) TCGA-12-3649-01 1 237995876 237995876 C G RYR2 Missense_Mutation p.Q4945E 0.20 benign(0.001) TCGA-12-3649-01 1 38227382 38227382 G A EPHA10 Missense_Mutation p.P182L 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-12-3649-01 1 43396302 43396302 C T SLC2A1 Missense_Mutation p.A171T 0.45 deleterious(0) probably_damaging(1) TCGA-12-3649-01 1 44595024 44595024 G A KLF17 Splice_Site p.X28_splice 0.35 TCGA-12-3649-01 1 92495767 92495767 G A EPHX4 Missense_Mutation p.G44D 0.40 tolerated(0.21) benign(0.121) TCGA-12-3649-01 20 37383758 37383758 C T ACTR5 Missense_Mutation p.R312W 0.35 deleterious(0) probably_damaging(1) TCGA-12-3649-01 20 50400910 50400910 G C SALL4 Missense_Mutation p.S1019C 0.27 deleterious(0) probably_damaging(0.998) TCGA-12-3649-01 22 41974860 41974860 A G PMM1 Missense_Mutation p.V167A 0.36 deleterious(0.03) possibly_damaging(0.837) TCGA-12-3649-01 2 10102621 10102621 G A GRHL1 Missense_Mutation p.G236D 0.07 tolerated(0.33) benign(0.111) TCGA-12-3649-01 2 108872031 108872031 G T SULT1C3 Missense_Mutation p.V135F 0.33 deleterious(0) possibly_damaging(0.547) TCGA-12-3649-01 2 162813661 162813661 A T SLC4A10 Nonsense_Mutation p.K902* 0.57 TCGA-12-3649-01 2 167141278 167141278 A T SCN9A Missense_Mutation p.S553R 0.35 deleterious(0.02) probably_damaging(0.917) TCGA-12-3649-01 2 179456812 179456812 T A TTN Missense_Mutation p.H19940L 0.37 TCGA-12-3649-01 2 56420095 56420095 G A CCDC85A Missense_Mutation p.A254T 0.41 tolerated_low_confidence(1) benign(0.002) TCGA-12-3649-01 2 89161430 89161430 G A IGKJ1 Missense_Mutation p.T3M 0.30 unknown(0) TCGA-12-3649-01 3 49939965 49939965 C T MST1R Missense_Mutation p.V360M 0.38 tolerated(0.12) benign(0.017) TCGA-12-3649-01 3 52816072 52816072 C T ITIH1 Silent p.C268C 0.34 TCGA-12-3649-01 4 113481967 113481967 G T C4orf21 Missense_Mutation p.Q1628K 0.05 tolerated(0.05) benign(0.39) TCGA-12-3649-01 4 114251469 114251469 C G ANK2 Missense_Mutation p.R990G 0.36 probably_damaging(1) TCGA-12-3649-01 4 164415798 164415798 C T TMA16 5'UTR 0.43 TCGA-12-3649-01 4 72618353 72618353 A G GC Missense_Mutation p.L445P 0.37 deleterious(0) probably_damaging(1) TCGA-12-3649-01 4 7666134 7666134 C T SORCS2 Missense_Mutation p.A336V 0.08 tolerated(0.5) benign(0.005) TCGA-12-3649-01 4 91230163 91230163 A T CCSER1 Missense_Mutation p.Q243L 0.37 deleterious(0) benign(0.145) TCGA-12-3649-01 5 112769636 112769636 C T TSSK1B Missense_Mutation p.E301K 0.23 tolerated_low_confidence(0.25) benign(0.003) TCGA-12-3649-01 5 140711854 140711854 C T PCDHGA1 Missense_Mutation p.R535W 0.31 tolerated_low_confidence(0.09) benign(0.015) TCGA-12-3649-01 5 16769271 16769271 C T MYO10 Silent p.R324R 0.29 TCGA-12-3649-01 6 102483322 102483322 C G GRIK2 Missense_Mutation p.S731C 0.34 deleterious(0) possibly_damaging(0.906) TCGA-12-3649-01 6 32713607 32713607 C T HLA-DQA2 Missense_Mutation p.T124M 0.43 tolerated(0.14) benign(0.01) TCGA-12-3649-01 6 36175096 36175096 C - BRPF3 Frame_Shift_Del p.Q538Rfs*8 0.19 TCGA-12-3649-01 6 55620351 55620351 G A BMP5 Missense_Mutation p.R449C 0.34 deleterious(0) probably_damaging(0.977) TCGA-12-3649-01 6 619481 619481 C T EXOC2 Missense_Mutation p.S162N 0.06 tolerated(0.62) possibly_damaging(0.827) TCGA-12-3649-01 6 97613246 97613246 G A MMS22L Nonsense_Mutation p.R1033* 0.34 TCGA-12-3649-01 7 82508670 82508670 G A PCLO Missense_Mutation p.T4546M 0.28 unknown(0) TCGA-12-3649-01 8 24357714 24357714 C A ADAM7 Nonsense_Mutation p.C649* 0.32 TCGA-12-3649-01 8 4277522 4277522 G A CSMD1 Missense_Mutation p.T123M 0.39 probably_damaging(0.995) TCGA-12-3649-01 8 71646034 71646034 C T XKR9 Missense_Mutation p.A166V 0.38 tolerated(0.18) benign(0.131) TCGA-12-3649-01 9 132638480 132638480 C T USP20 Missense_Mutation p.A791V 0.46 tolerated(0.22) possibly_damaging(0.517) TCGA-12-3649-01 9 35609198 35609198 G A TESK1 Missense_Mutation p.R447H 0.38 tolerated(0.27) probably_damaging(0.943) TCGA-12-3649-01 9 97333806 97333806 C T FBP2 Missense_Mutation p.G169S 0.38 deleterious(0.04) possibly_damaging(0.852) TCGA-12-3649-01 X 141291061 141291061 A T MAGEC2 Missense_Mutation p.F238Y 0.71 deleterious(0) probably_damaging(0.993) TCGA-12-3649-01 X 151900207 151900207 C A MAGEA12 Missense_Mutation p.K198N 0.82 deleterious(0.01) probably_damaging(0.94) TCGA-12-3649-01 X 155003952 155003952 C A SPRY3 Missense_Mutation p.P140H 0.30 tolerated(0.59) benign(0.001) TCGA-12-3649-01 X 31165414 31165414 C G DMD Missense_Mutation p.R3592T 0.71 benign(0.402) TCGA-12-3649-01 X 35820765 35820765 T A MAGEB16 Missense_Mutation p.F151Y 0.70 deleterious(0.02) probably_damaging(0.995) TCGA-12-3649-01 X 89177576 89177576 G A TGIF2LX Silent p.K164K 0.69 TCGA-12-3649-01 X 96212894 96212894 G T DIAPH2 Missense_Mutation p.G561V 0.75 tolerated(0.37) unknown(0) TCGA-12-3650-01 10 27415646 27415646 G A YME1L1 Missense_Mutation p.L367F 0.67 deleterious(0) probably_damaging(0.952) TCGA-12-3650-01 10 50599244 50599244 T G DRGX Missense_Mutation p.Q38P 0.55 deleterious(0) probably_damaging(0.925) TCGA-12-3650-01 11 1274084 1274084 G A MUC5B Missense_Mutation p.V5031M 0.48 unknown(0) TCGA-12-3650-01 11 60231772 60231772 C T MS4A1 Silent p.S97S 0.36 TCGA-12-3650-01 11 66637883 66637883 A C PC Missense_Mutation p.C265G 0.37 deleterious(0) probably_damaging(1) TCGA-12-3650-01 12 247990 247990 C T IQSEC3 Silent p.D487D 0.52 TCGA-12-3650-01 12 33031888 33031888 C T PKP2 Missense_Mutation p.R101H 0.41 tolerated(0.6) benign(0.009) TCGA-12-3650-01 12 41967460 41967460 G A PDZRN4 Missense_Mutation p.R960H 0.40 deleterious(0) probably_damaging(0.998) TCGA-12-3650-01 12 51717923 51717923 C T BIN2 5'UTR 0.57 TCGA-12-3650-01 12 7805403 7805403 C T APOBEC1 Missense_Mutation p.V25I 0.31 tolerated(0.22) benign(0.007) TCGA-12-3650-01 15 20645788 20645788 G A HERC2P3 RNA 0.34 TCGA-12-3650-01 15 78921864 78921864 G A CHRNB4 Silent p.G261G 0.48 TCGA-12-3650-01 16 24372858 24372858 C T CACNG3 Nonsense_Mutation p.R208* 0.39 TCGA-12-3650-01 16 48210869 48210869 G A ABCC11 Silent p.H1168H 0.19 TCGA-12-3650-01 17 19284297 19284297 C T MAPK7 Missense_Mutation p.R259C 0.33 deleterious(0) unknown(0) TCGA-12-3650-01 17 34072485 34072485 C T GAS2L2 Silent p.P677P 0.45 TCGA-12-3650-01 17 35297618 35297618 C G LHX1 Missense_Mutation p.Q68E 0.13 tolerated(0.06) benign(0.097) TCGA-12-3650-01 17 36896684 36896684 G C PCGF2 5'UTR 0.71 TCGA-12-3650-01 17 46607745 46607745 G T HOXB1 Silent p.T174T 0.31 TCGA-12-3650-01 17 72539125 72539125 G A CD300C Silent p.A134A 0.36 TCGA-12-3650-01 18 33554930 33554930 C T C18orf21 Missense_Mutation p.R58C 0.42 deleterious(0) probably_damaging(0.972) TCGA-12-3650-01 19 16790904 16790904 C T TMEM38A Silent p.I78I 0.25 TCGA-12-3650-01 19 30313489 30313489 C G CCNE1 Missense_Mutation p.H363Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-12-3650-01 19 37904887 37904887 G C ZNF569 Missense_Mutation p.H225D 0.30 tolerated(0.22) benign(0.111) TCGA-12-3650-01 19 46116829 46116829 G A EML2 Silent p.H799H 0.28 TCGA-12-3650-01 19 54759401 54759401 C T LILRB5 Missense_Mutation p.V234M 0.43 tolerated(0.11) benign(0.427) TCGA-12-3650-01 19 9062926 9062926 C T MUC16 Missense_Mutation p.V8174M 0.28 unknown(0) TCGA-12-3650-01 1 103487313 103487313 C A COL11A1 Missense_Mutation p.G420C 0.29 probably_damaging(1) TCGA-12-3650-01 1 115537649 115537649 A G SYCP1 3'UTR 0.31 TCGA-12-3650-01 1 161495457 161495457 G A HSPA6 Missense_Mutation p.V337I 0.55 deleterious_low_confidence(0) benign(0.258) TCGA-12-3650-01 1 196927110 196927110 G T CFHR2 Missense_Mutation p.V174F 0.44 deleterious(0.04) benign(0.069) TCGA-12-3650-01 1 42693556 42693556 G A FOXJ3 Missense_Mutation p.R176W 0.41 deleterious(0) possibly_damaging(0.614) TCGA-12-3650-01 20 35752057 35752057 C T MROH8 Missense_Mutation p.G671D 0.39 tolerated(0.09) benign(0.176) TCGA-12-3650-01 20 43042366 43042366 C T HNF4A Nonsense_Mutation p.R140* 0.40 TCGA-12-3650-01 22 20723834 20723834 C T USP41 Missense_Mutation p.R171Q 0.51 tolerated(0.58) benign(0.014) TCGA-12-3650-01 2 153616369 153616369 G A ARL6IP6 3'UTR 0.33 TCGA-12-3650-01 2 28741363 28741363 C A PLB1 Missense_Mutation p.P50T 0.34 tolerated(0.5) benign(0.01) TCGA-12-3650-01 4 100232699 100232699 A C ADH1B Missense_Mutation p.W315G 0.45 deleterious(0) probably_damaging(0.988) TCGA-12-3650-01 4 104640358 104640358 G A TACR3 Missense_Mutation p.R159C 0.45 deleterious(0) probably_damaging(0.987) TCGA-12-3650-01 4 177650867 177650867 G A VEGFC Missense_Mutation p.R61W 0.44 deleterious(0) probably_damaging(1) TCGA-12-3650-01 4 48069475 48069475 C T TXK 3'UTR 0.44 TCGA-12-3650-01 4 5461833 5461833 C T STK32B Silent p.L263L 0.38 TCGA-12-3650-01 5 1216997 1216997 C T SLC6A19 Silent p.S370S 0.30 TCGA-12-3650-01 5 140705 140705 C T PLEKHG4B Nonsense_Mutation p.Q95* 0.48 TCGA-12-3650-01 5 160721001 160721001 G A GABRB2 3'UTR 0.53 TCGA-12-3650-01 5 168310294 168310294 C T SLIT3 Missense_Mutation p.R154H 0.39 deleterious(0) probably_damaging(0.999) TCGA-12-3650-01 6 131277174 131277174 C G EPB41L2 Missense_Mutation p.S151T 0.40 tolerated(0.19) benign(0.034) TCGA-12-3650-01 6 165715366 165715366 C T C6orf118 Missense_Mutation p.V149M 0.42 tolerated(0.12) benign(0.017) TCGA-12-3650-01 6 50696983 50696983 C T TFAP2D Missense_Mutation p.R281W 0.41 deleterious(0) probably_damaging(0.953) TCGA-12-3650-01 7 123594466 123594466 G A SPAM1 Missense_Mutation p.R281Q 0.25 deleterious(0) probably_damaging(0.994) TCGA-12-3650-01 7 128491526 128491526 G A FLNC Missense_Mutation p.V1896M 0.33 deleterious(0) probably_damaging(1) TCGA-12-3650-01 7 135376342 135376342 G A SLC13A4 Silent p.L424L 0.26 TCGA-12-3650-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.88 deleterious(0.02) probably_damaging(0.974) TCGA-12-3650-01 7 99717380 99717380 C T CNPY4 Missense_Mutation p.R5W 0.25 tolerated(0.1) possibly_damaging(0.846) TCGA-12-3650-01 8 81431744 81431744 G T ZBTB10 Missense_Mutation p.C866F 0.46 deleterious_low_confidence(0) benign(0.099) TCGA-12-3650-01 9 107379535 107379535 G A OR13C9 Silent p.S317S 0.38 TCGA-12-3650-01 9 113173765 113173765 G A SVEP1 Missense_Mutation p.P2076S 0.06 probably_damaging(1) TCGA-12-3650-01 9 136302931 136302931 G A ADAMTS13 Missense_Mutation p.D500N 0.43 deleterious(0.01) benign(0.314) TCGA-12-3650-01 9 32630679 32630679 A T TAF1L Silent p.L1633L 0.40 TCGA-12-3650-01 X 118221675 118221675 C T KIAA1210 Missense_Mutation p.R1173Q 0.84 tolerated(0.22) benign(0.042) TCGA-12-3650-01 X 153588591 153588591 G A FLNA Missense_Mutation p.A1191V 0.43 deleterious(0.01) possibly_damaging(0.641) TCGA-12-3650-01 X 15381369 15381369 G A FIGF Nonsense_Mutation p.R55* 0.93 TCGA-12-3650-01 X 154490213 154490213 C A RAB39B Nonsense_Mutation p.E173* 0.81 TCGA-12-3652-01 11 102822878 102822878 G A MMP13 Missense_Mutation p.A221V 0.41 deleterious(0) probably_damaging(0.999) TCGA-12-3652-01 11 56949854 56949854 C T LRRC55 Silent p.L163L 0.30 TCGA-12-3652-01 11 59132440 59132440 G T OR5AN1 Missense_Mutation p.C170F 0.42 deleterious(0.01) probably_damaging(1) TCGA-12-3652-01 12 111471938 111471938 G A CUX2 5'UTR 0.47 TCGA-12-3652-01 12 117217036 117217036 C T RNFT2 Silent p.D255D 0.43 TCGA-12-3652-01 12 118517207 118517207 C A VSIG10 Missense_Mutation p.C290F 0.51 deleterious(0) probably_damaging(1) TCGA-12-3652-01 12 119942953 119942953 G A CCDC60 Missense_Mutation p.R243Q 0.45 tolerated(0.1) probably_damaging(1) TCGA-12-3652-01 12 4446202 4446202 C T C12orf5 Intron 0.29 TCGA-12-3652-01 12 52448556 52448556 G T NR4A1 Silent p.P161P 0.52 TCGA-12-3652-01 12 56536179 56536179 G T ESYT1 Missense_Mutation p.Q911H 0.44 tolerated(0.05) possibly_damaging(0.579) TCGA-12-3652-01 13 25425654 25425654 C T RNF17 Missense_Mutation p.R1089C 0.77 tolerated(0.18) benign(0.336) TCGA-12-3652-01 13 67205380 67205380 T C PCDH9 Missense_Mutation p.K1101R 0.42 tolerated(0.12) benign(0.277) TCGA-12-3652-01 13 74387376 74387376 C T KLF12 Missense_Mutation p.S240N 0.26 deleterious(0.02) probably_damaging(0.986) TCGA-12-3652-01 15 34049760 34049760 G A RYR3 Missense_Mutation p.G2890R 0.42 probably_damaging(0.994) TCGA-12-3652-01 15 42162053 42162053 G A SPTBN5 Missense_Mutation p.R1947C 0.57 probably_damaging(0.949) TCGA-12-3652-01 15 49620177 49620177 A G GALK2 Missense_Mutation p.T400A 0.37 deleterious(0) probably_damaging(0.997) TCGA-12-3652-01 15 65917215 65917215 C A SLC24A1 Missense_Mutation p.A266E 0.43 benign(0.002) TCGA-12-3652-01 16 30594387 30594387 G T ZNF785 Missense_Mutation p.R238S 0.07 tolerated(0.54) possibly_damaging(0.634) TCGA-12-3652-01 17 18052554 18052554 G A MYO15A Silent p.S2327S 0.49 TCGA-12-3652-01 17 31107790 31107790 C T MYO1D Silent p.G36G 0.46 TCGA-12-3652-01 17 42335421 42335421 G A SLC4A1 Silent p.V405V 0.37 TCGA-12-3652-01 18 20564928 20564928 T C RBBP8 Silent p.Y228Y 0.35 TCGA-12-3652-01 19 18649190 18649190 G A FKBP8 Missense_Mutation p.T203M 0.30 tolerated(0.09) possibly_damaging(0.646) TCGA-12-3652-01 19 36339161 36339161 C T NPHS1 Missense_Mutation p.V437I 0.25 tolerated(0.08) benign(0.107) TCGA-12-3652-01 19 43371892 43371892 T A PSG1 3'UTR 0.31 TCGA-12-3652-01 19 54930375 54930375 T C TTYH1 Missense_Mutation p.I67T 0.27 deleterious(0.03) probably_damaging(0.913) TCGA-12-3652-01 19 58441862 58441862 T A ZNF418 Missense_Mutation p.S23C 0.08 deleterious(0) probably_damaging(0.963) TCGA-12-3652-01 19 6677900 6677900 G T C3 Missense_Mutation p.P1662H 0.32 deleterious(0) probably_damaging(0.975) TCGA-12-3652-01 1 153043133 153043133 T A SPRR2B Silent p.P61P 0.32 TCGA-12-3652-01 1 167814945 167814945 G A ADCY10 Missense_Mutation p.R955C 0.41 tolerated(0.26) benign(0.049) TCGA-12-3652-01 1 180904433 180904433 G A KIAA1614 Missense_Mutation p.R463H 0.53 deleterious(0) probably_damaging(0.999) TCGA-12-3652-01 1 182356407 182356407 C T GLUL Missense_Mutation p.D63N 0.45 deleterious(0) probably_damaging(0.998) TCGA-12-3652-01 1 220359030 220359030 G A RAB3GAP2 Silent p.N611N 0.05 TCGA-12-3652-01 1 221057616 221057616 A G HLX Missense_Mutation p.E346G 0.48 deleterious(0) benign(0.269) TCGA-12-3652-01 1 222705452 222705452 G A HHIPL2 Nonsense_Mutation p.R527* 0.47 TCGA-12-3652-01 1 237787140 237787151 GATTTCCATGAA - RYR2 In_Frame_Del p.F1999_D2002del 0.27 TCGA-12-3652-01 1 237947552 237947552 C T RYR2 Silent p.G4180G 0.38 TCGA-12-3652-01 1 3394457 3394457 G A ARHGEF16 Missense_Mutation p.A498T 0.49 deleterious(0.04) possibly_damaging(0.612) TCGA-12-3652-01 20 33438613 33438613 A G GGT7 Intron 0.48 TCGA-12-3652-01 20 43851266 43851266 A G SEMG2 Silent p.T331T 0.27 TCGA-12-3652-01 20 44180784 44180784 G A WFDC8 Missense_Mutation p.R203C 0.32 tolerated(0.18) benign(0.028) TCGA-12-3652-01 20 5283335 5283335 G A PROKR2 Missense_Mutation p.T169M 0.31 tolerated(0.07) possibly_damaging(0.701) TCGA-12-3652-01 21 11021202 11021202 C A BAGE2 RNA 0.05 TCGA-12-3652-01 21 34932292 34932292 A G SON Intron 0.34 TCGA-12-3652-01 21 43496188 43496188 G C UMODL1 Missense_Mutation p.V51L 0.41 tolerated(0.18) benign(0.315) TCGA-12-3652-01 2 191236128 191236128 G C INPP1 Nonstop_Mutation p.*400Yext*10 0.47 TCGA-12-3652-01 2 73677648 73677648 A G ALMS1 Missense_Mutation p.T1331A 0.39 benign(0.217) TCGA-12-3652-01 3 12880946 12880946 A G RPL32 Silent p.Y60Y 0.38 TCGA-12-3652-01 3 12977752 12977752 G A IQSEC1 Missense_Mutation p.P269L 0.50 tolerated(0.27) benign(0.047) TCGA-12-3652-01 3 138724917 138724917 G A PRR23A Missense_Mutation p.A65V 0.79 deleterious(0.04) possibly_damaging(0.604) TCGA-12-3652-01 3 21606168 21606168 C T ZNF385D Silent p.P58P 0.33 TCGA-12-3652-01 3 8787341 8787341 G A CAV3 Missense_Mutation p.V82I 0.46 tolerated(1) benign(0.003) TCGA-12-3652-01 4 110663746 110663746 C T CFI Missense_Mutation p.E479K 0.43 tolerated(0.98) benign(0.002) TCGA-12-3652-01 4 187541102 187541102 T A FAT1 Missense_Mutation p.K2213I 0.44 probably_damaging(0.932) TCGA-12-3652-01 4 30726111 30726111 G T PCDH7 Missense_Mutation p.D1023Y 0.49 deleterious(0) probably_damaging(0.957) TCGA-12-3652-01 4 39435838 39435838 G A KLB Silent p.S278S 0.46 TCGA-12-3652-01 4 6578364 6578364 C T MAN2B2 Silent p.R66R 0.40 TCGA-12-3652-01 4 73012972 73012972 G T NPFFR2 Missense_Mutation p.V338F 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-12-3652-01 5 140256668 140256668 G A PCDHA12 Silent p.A537A 0.38 TCGA-12-3652-01 5 26902769 26902769 G A CDH9 Nonsense_Mutation p.R357* 0.75 TCGA-12-3652-01 5 79284387 79284387 C G MTX3 Missense_Mutation p.L73F 0.44 tolerated(0.14) possibly_damaging(0.729) TCGA-12-3652-01 5 89943466 89943466 A G GPR98 Silent p.G1058G 0.38 TCGA-12-3652-01 6 100838896 100838896 G A SIM1 Nonsense_Mutation p.R548* 0.43 TCGA-12-3652-01 6 117246619 117246619 C T RFX6 Missense_Mutation p.A561V 0.40 deleterious(0.03) probably_damaging(0.946) TCGA-12-3652-01 6 146215353 146215353 A G SHPRH Missense_Mutation p.I1543T 0.43 deleterious(0) possibly_damaging(0.759) TCGA-12-3652-01 6 51483694 51483694 G T PKHD1 3'UTR 0.59 TCGA-12-3652-01 7 116960680 116960680 C T WNT2 Missense_Mutation p.R84H 0.45 deleterious(0) probably_damaging(0.938) TCGA-12-3652-01 7 141734061 141734061 G T MGAM Splice_Site p.X557_splice 0.32 TCGA-12-3652-01 7 30492365 30492365 C T NOD1 Missense_Mutation p.R223Q 0.35 tolerated(0.54) benign(0.008) TCGA-12-3652-01 7 55221711 55221711 G C EGFR Missense_Mutation p.R252P 0.10 tolerated(0.06) possibly_damaging(0.838) TCGA-12-3652-01 8 139164563 139164563 G A FAM135B Nonsense_Mutation p.R719* 0.11 TCGA-12-3652-01 9 116136625 116136625 G T HDHD3 Silent p.R4R 0.19 TCGA-12-3652-01 9 16419622 16419622 G A BNC2 Missense_Mutation p.R889C 0.17 deleterious(0) probably_damaging(0.976) TCGA-12-3652-01 9 27950347 27950347 C T LINGO2 Missense_Mutation p.R108H 0.79 tolerated(0.14) benign(0.016) TCGA-12-3652-01 9 96051416 96051416 A G WNK2 Silent p.P1497P 0.67 TCGA-12-3652-01 X 105183893 105183893 A T NRK Missense_Mutation p.H1277L 0.75 deleterious(0.01) probably_damaging(0.994) TCGA-12-3652-01 X 30260502 30260502 G A MAGEB4 Missense_Mutation p.D84N 0.19 deleterious(0.01) benign(0.363) TCGA-12-3652-01 X 66937441 66937441 C T AR Silent p.F765F 0.10 TCGA-12-3652-01 Y 21897252 21897252 T A KDM5D Missense_Mutation p.S307C 0.90 tolerated(0.18) benign(0.004) TCGA-12-3653-01 10 91498196 91498196 A G KIF20B Missense_Mutation p.N1160D 0.31 tolerated(0.09) benign(0.287) TCGA-12-3653-01 11 100920711 100920711 C A PGR Missense_Mutation p.V813F 0.31 deleterious(0) probably_damaging(0.99) TCGA-12-3653-01 11 93826783 93826783 G A HEPHL1 Missense_Mutation p.R804Q 0.68 tolerated(0.32) benign(0.001) TCGA-12-3653-01 12 5603770 5603770 G A NTF3 Silent p.A143A 0.18 TCGA-12-3653-01 17 38635988 38635988 C T TNS4 Silent p.T616T 0.23 TCGA-12-3653-01 17 39274446 39274446 C T KRTAP4-11 Missense_Mutation p.R41H 0.58 tolerated(0.06) unknown(0) TCGA-12-3653-01 17 41477126 41477126 C T ARL4D Missense_Mutation p.A9V 0.33 tolerated(0.36) benign(0.394) TCGA-12-3653-01 17 7250193 7250193 C A ACAP1 Missense_Mutation p.S358R 0.65 deleterious(0) possibly_damaging(0.757) TCGA-12-3653-01 19 53086225 53086228 AAGG - ZNF701 Frame_Shift_Del p.K371Ffs*69 0.36 TCGA-12-3653-01 19 6495656 6495656 G A TUBB4A Missense_Mutation p.T285M 0.41 deleterious_low_confidence(0.02) probably_damaging(0.929) TCGA-12-3653-01 1 165177351 165177351 G A LMX1A Nonsense_Mutation p.R256* 0.45 TCGA-12-3653-01 1 43649424 43649424 G A WDR65 Missense_Mutation p.V213I 0.51 tolerated(0.16) benign(0.013) TCGA-12-3653-01 21 35206635 35206635 G A ITSN1 Missense_Mutation p.G1126S 0.59 deleterious(0) probably_damaging(0.994) TCGA-12-3653-01 21 45978262 45978262 C T KRTAP10-3 Missense_Mutation p.V113I 0.65 tolerated(0.22) unknown(0) TCGA-12-3653-01 2 141130669 141130669 C T LRP1B Missense_Mutation p.R3559Q 0.48 benign(0) TCGA-12-3653-01 2 179323290 179323290 C T DFNB59 Silent p.F201F 0.41 TCGA-12-3653-01 2 27430582 27430582 C T SLC5A6 5'UTR 0.10 TCGA-12-3653-01 3 142281611 142281611 C T ATR Missense_Mutation p.M211I 0.05 tolerated_low_confidence(0.19) benign(0) TCGA-12-3653-01 3 49042445 49042445 G A P4HTM Missense_Mutation p.A347T 0.12 tolerated(0.13) possibly_damaging(0.879) TCGA-12-3653-01 4 39259137 39259137 C A WDR19 Nonsense_Mutation p.S1049* 0.15 TCGA-12-3653-01 5 26881547 26881547 G A CDH9 Missense_Mutation p.R690W 0.53 deleterious(0) probably_damaging(0.998) TCGA-12-3653-01 6 51609339 51609339 T C PKHD1 Missense_Mutation p.K3334E 0.46 tolerated(0.62) benign(0.004) TCGA-12-3653-01 6 6196068 6196068 C T F13A1 Missense_Mutation p.V423I 0.30 tolerated(0.21) benign(0.008) TCGA-12-3653-01 7 142573429 142573429 C T TRPV6 Missense_Mutation p.R305H 0.43 tolerated(0.1) benign(0.055) TCGA-12-3653-01 7 143080299 143080299 T C ZYX Missense_Mutation p.S303P 0.28 tolerated(0.34) benign(0.017) TCGA-12-3653-01 7 7483281 7483281 C T COL28A1 Missense_Mutation p.E529K 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-12-3653-01 7 86415877 86415877 G A GRM3 Missense_Mutation p.D257N 0.11 tolerated(0.06) probably_damaging(0.916) TCGA-12-3653-01 7 87179839 87179839 C G ABCB1 Missense_Mutation p.G390A 0.09 deleterious(0) probably_damaging(0.98) TCGA-12-3653-01 7 98256632 98256632 C T NPTX2 Silent p.G348G 0.33 TCGA-12-3653-01 X 128621040 128621040 T G SMARCA1 Missense_Mutation p.Q724H 0.29 tolerated(0.06) benign(0.163) TCGA-12-3653-01 X 135579756 135579756 G A HTATSF1 Intron 0.29 TCGA-12-3653-01 X 37587132 37587133 - C XK Frame_Shift_Ins p.W253Lfs*13 0.26 TCGA-12-5295-01 10 93756207 93756207 G A BTAF1 Missense_Mutation p.G1131S 0.65 deleterious(0.04) benign(0.022) TCGA-12-5295-01 10 96447958 96447958 G A CYP2C18 Missense_Mutation p.M136I 0.06 deleterious(0.01) benign(0.329) TCGA-12-5295-01 11 1214138 1214138 G A MUC5AC RNA 0.41 TCGA-12-5295-01 11 30033870 30033870 C T KCNA4 Missense_Mutation p.R119K 0.37 tolerated_low_confidence(0.88) benign(0) TCGA-12-5295-01 11 4945317 4945317 C T OR51G1 Missense_Mutation p.G85S 0.34 tolerated(0.16) benign(0.119) TCGA-12-5295-01 11 55370918 55370918 T C OR4C11 Silent p.%3D 0.43 TCGA-12-5295-01 11 65349460 65349460 A - EHBP1L1 Frame_Shift_Del p.P440Qfs*6 0.29 TCGA-12-5295-01 11 65545459 65545459 G C AP5B1 Silent p.P835P 0.29 TCGA-12-5295-01 11 78380300 78380300 C T TENM4 Missense_Mutation p.G2364R 0.38 deleterious(0) probably_damaging(1) TCGA-12-5295-01 11 7949483 7949483 C T OR10A6 Missense_Mutation p.A243T 0.42 deleterious(0) benign(0.005) TCGA-12-5295-01 11 86778833 86778833 C A TMEM135 Missense_Mutation p.A80D 0.32 tolerated(0.19) benign(0.271) TCGA-12-5295-01 12 125294730 125294730 C A SCARB1 Nonsense_Mutation p.E278* 0.36 TCGA-12-5295-01 12 26835518 26835518 C T ITPR2 Missense_Mutation p.V413I 0.21 tolerated(0.47) benign(0.04) TCGA-12-5295-01 12 49086898 49086898 G A CCNT1 Missense_Mutation p.S700L 0.41 deleterious_low_confidence(0.01) possibly_damaging(0.461) TCGA-12-5295-01 12 65633734 65633734 G A LEMD3 Silent p.L649L 0.31 TCGA-12-5295-01 12 69985894 69985894 T G CCT2 Silent p.A235A 0.37 TCGA-12-5295-01 14 105642875 105642875 A T NUDT14 Missense_Mutation p.Y142N 0.44 deleterious(0.01) possibly_damaging(0.877) TCGA-12-5295-01 14 20502107 20502107 G A OR4K13 Missense_Mutation p.L271F 0.50 deleterious(0.04) benign(0.167) TCGA-12-5295-01 14 74203800 74203800 G A ELMSAN1 Silent p.D550D 0.65 TCGA-12-5295-01 15 30000963 30000963 G A TJP1 Silent p.H1550H 0.03 TCGA-12-5295-01 15 40750817 40750817 C T BAHD1 Missense_Mutation p.R52C 0.39 deleterious(0.04) benign(0.088) TCGA-12-5295-01 15 79254574 79254574 G A RASGRF1 Missense_Mutation p.T1245M 0.25 tolerated(0.13) benign(0.249) TCGA-12-5295-01 15 92690225 92690225 C T SLCO3A1 Silent p.G508G 0.33 TCGA-12-5295-01 16 1129429 1129429 C T SSTR5 Silent p.N187N 0.29 TCGA-12-5295-01 17 39296555 39296555 C T KRTAP4-6 Missense_Mutation p.R62H 0.35 tolerated(0.13) unknown(0) TCGA-12-5295-01 17 40474479 40474479 G A STAT3 Missense_Mutation p.T641I 0.10 deleterious(0) probably_damaging(0.999) TCGA-12-5295-01 18 50278484 50278484 C T DCC Missense_Mutation p.T51I 0.23 tolerated(0.18) benign(0.08) TCGA-12-5295-01 18 7231759 7231759 T C LRRC30 Missense_Mutation p.L208P 0.32 deleterious(0) probably_damaging(0.956) TCGA-12-5295-01 19 41600897 41600897 C T CYP2A13 Silent p.L399L 0.39 TCGA-12-5295-01 19 43258694 43258694 C T PSG8 Missense_Mutation p.R345H 0.33 tolerated(0.42) benign(0.013) TCGA-12-5295-01 19 45208902 45208902 G T CEACAM16 Missense_Mutation p.R235L 0.42 tolerated(0.43) benign(0.083) TCGA-12-5295-01 19 9006685 9006685 C T MUC16 Missense_Mutation p.G13188D 0.38 probably_damaging(0.983) TCGA-12-5295-01 1 115215817 115215817 G T AMPD1 Missense_Mutation p.A754D 0.36 deleterious(0) possibly_damaging(0.873) TCGA-12-5295-01 1 144882550 144882550 G A PDE4DIP Missense_Mutation p.P1157S 0.20 tolerated(0.1) benign(0.012) TCGA-12-5295-01 1 156532968 156532968 C T IQGAP3 Silent p.L252L 0.41 TCGA-12-5295-01 1 16778338 16778338 G A NECAP2 Missense_Mutation p.M165I 0.53 tolerated(0.62) benign(0.002) TCGA-12-5295-01 1 196227421 196227421 C A KCNT2 Missense_Mutation p.Q1038H 0.38 deleterious(0) probably_damaging(0.993) TCGA-12-5295-01 1 205272517 205272517 C T NUAK2 3'UTR 0.31 TCGA-12-5295-01 1 23648083 23648083 A C HNRNPR Missense_Mutation p.V250G 0.07 deleterious(0) probably_damaging(0.986) TCGA-12-5295-01 1 31406150 31406150 C T PUM1 Missense_Mutation p.G1159S 0.49 deleterious(0.01) probably_damaging(0.998) TCGA-12-5295-01 1 41285881 41285881 C T KCNQ4 Silent p.H330H 0.15 TCGA-12-5295-01 20 21143040 21143040 G A RP4-777D9.2 Intron 0.37 TCGA-12-5295-01 20 6758901 6758901 A T BMP2 Missense_Mutation p.E119V 0.04 deleterious(0) probably_damaging(0.991) TCGA-12-5295-01 2 101089991 101089991 G A NMS Missense_Mutation p.R58H 0.32 tolerated(0.31) benign(0.374) TCGA-12-5295-01 2 179457532 179457532 G A TTN Missense_Mutation p.P19772S 0.33 TCGA-12-5295-01 2 216288171 216288171 G - FN1 Frame_Shift_Del p.T432Mfs*12 0.19 TCGA-12-5295-01 2 220073015 220073015 A G ZFAND2B Missense_Mutation p.T158A 0.42 tolerated(0.35) benign(0.001) TCGA-12-5295-01 2 231042927 231042927 G T SP110 Missense_Mutation p.P465T 0.24 deleterious(0) possibly_damaging(0.803) TCGA-12-5295-01 2 70164461 70164461 T C MXD1 Missense_Mutation p.I138T 0.38 tolerated(0.42) benign(0.04) TCGA-12-5295-01 2 74757002 74757002 G T HTRA2 5'UTR 0.57 TCGA-12-5295-01 2 88828848 88828848 G A TEX37 Silent p.P133P 0.32 TCGA-12-5295-01 3 131101062 131101062 C T NUDT16 Missense_Mutation p.P104L 0.15 deleterious(0.01) benign(0.033) TCGA-12-5295-01 3 140866045 140866045 G A SPSB4 Silent p.Q252Q 0.46 TCGA-12-5295-01 3 152173358 152173358 C T MBNL1 Intron 0.38 TCGA-12-5295-01 3 72427619 72427619 C T RYBP Missense_Mutation p.G291R 0.26 deleterious(0) probably_damaging(0.991) TCGA-12-5295-01 4 183658027 183658027 G T TENM3 Missense_Mutation p.A1012S 0.26 tolerated(0.22) possibly_damaging(0.739) TCGA-12-5295-01 4 189063477 189063477 G C TRIML1 Missense_Mutation p.E192D 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-12-5295-01 4 39306546 39306546 C A RFC1 Missense_Mutation p.E667D 0.36 deleterious(0) probably_damaging(0.999) TCGA-12-5295-01 4 41621353 41621353 G A LIMCH1 Silent p.T277T 0.39 TCGA-12-5295-01 4 79295398 79295398 A T FRAS1 Missense_Mutation p.K1048N 0.28 benign(0.042) TCGA-12-5295-01 4 9783859 9783859 G A DRD5 Missense_Mutation p.R69H 0.17 deleterious(0.01) probably_damaging(0.989) TCGA-12-5295-01 5 151180343 151180343 G T G3BP1 Missense_Mutation p.L369F 0.27 tolerated(0.09) possibly_damaging(0.812) TCGA-12-5295-01 5 153030021 153030021 C T GRIA1 Missense_Mutation p.R208W 0.31 deleterious(0) probably_damaging(0.946) TCGA-12-5295-01 5 162869506 162869506 C T CCNG1 Missense_Mutation p.R275W 0.35 tolerated(0.12) benign(0.003) TCGA-12-5295-01 6 159050767 159050767 G A TMEM181 Missense_Mutation p.E537K 0.27 deleterious(0.02) possibly_damaging(0.802) TCGA-12-5295-01 6 30035220 30035220 C A PPP1R11 Silent p.T11T 0.36 TCGA-12-5295-01 6 46107320 46107320 T A ENPP4 5'UTR 0.36 TCGA-12-5295-01 6 46107333 46107333 G C ENPP4 Missense_Mutation p.V5L 0.36 tolerated(0.93) benign(0) TCGA-12-5295-01 6 71004007 71004007 C T COL9A1 Missense_Mutation p.V187M 0.36 unknown(0) TCGA-12-5295-01 7 103048353 103048353 A T SLC26A5 Missense_Mutation p.F278Y 0.28 deleterious(0) probably_damaging(0.994) TCGA-12-5295-01 7 117306983 117306983 C T CFTR Missense_Mutation p.R1422W 0.22 tolerated(0.11) benign(0.018) TCGA-12-5295-01 7 138546043 138546043 G C KIAA1549 Missense_Mutation p.L1697V 0.20 deleterious(0) probably_damaging(0.999) TCGA-12-5295-01 7 147092850 147092850 G C CNTNAP2 Missense_Mutation p.D550H 0.20 deleterious(0) probably_damaging(0.973) TCGA-12-5295-01 7 150935876 150935876 A T CHPF2 3'UTR 0.44 TCGA-12-5295-01 7 33044873 33044873 G A FKBP9 Missense_Mutation p.M541I 0.30 tolerated(0.08) probably_damaging(0.937) TCGA-12-5295-01 7 43622866 43622866 C T STK17A Silent p.G8G 0.31 TCGA-12-5295-01 7 44005970 44005970 G T POLR2J4 RNA 0.34 TCGA-12-5295-01 8 124382139 124382139 C T ATAD2 Missense_Mutation p.D285N 0.33 tolerated(0.24) possibly_damaging(0.694) TCGA-12-5295-01 8 13251148 13251148 G A DLC1 Nonsense_Mutation p.R410* 0.38 TCGA-12-5295-01 8 17573333 17573333 A G MTUS1 Missense_Mutation p.Y843H 0.37 tolerated(0.47) possibly_damaging(0.847) TCGA-12-5295-01 9 14789086 14789086 G A FREM1 Silent p.S1336S 0.40 TCGA-12-5295-01 9 27205000 27205000 G A TEK Silent p.L767L 0.32 TCGA-12-5295-01 9 34234331 34234331 A - UBAP1 Frame_Shift_Del p.V116Yfs*39 0.25 TCGA-12-5295-01 9 79985216 79985216 T C VPS13A Missense_Mutation p.L2904P 0.04 deleterious(0) probably_damaging(0.992) TCGA-12-5295-01 X 103434406 103434406 T C FAM199X Missense_Mutation p.S372P 0.32 deleterious_low_confidence(0.01) benign(0.354) TCGA-12-5295-01 X 107911614 107911614 G A COL4A5 Missense_Mutation p.E1224K 0.37 unknown(0) TCGA-12-5295-01 X 152613030 152613030 C T ZNF275 Missense_Mutation p.P296L 0.29 tolerated(0.33) benign(0.01) TCGA-12-5295-01 X 153716308 153716308 C A SLC10A3 Silent p.L324L 0.32 TCGA-12-5295-01 X 55650313 55650313 C T FOXR2 Missense_Mutation p.P57S 0.29 deleterious(0.04) probably_damaging(0.979) TCGA-12-5295-01 X 67742720 67742720 C A YIPF6 Missense_Mutation p.L185I 0.33 tolerated(0.16) benign(0.446) TCGA-12-5299-01 10 88418396 88418396 G A OPN4 Missense_Mutation p.V205I 0.78 tolerated(0.11) benign(0.043) TCGA-12-5299-01 11 117985881 117985881 G A TMPRSS4 Silent p.A346A 0.48 TCGA-12-5299-01 11 119216274 119216274 G C MFRP Missense_Mutation p.P166R 0.41 deleterious(0) probably_damaging(0.917) TCGA-12-5299-01 11 120168973 120168973 G C POU2F3 Splice_Site p.X47_splice 0.45 TCGA-12-5299-01 11 123600382 123600382 C A ZNF202 Missense_Mutation p.G185V 0.07 tolerated(0.19) possibly_damaging(0.46) TCGA-12-5299-01 11 134128470 134128470 C T ACAD8 Missense_Mutation p.P148S 0.32 tolerated(0.8) benign(0.005) TCGA-12-5299-01 11 9074727 9074727 G A SCUBE2 Missense_Mutation p.R456C 0.30 deleterious(0) benign(0.443) TCGA-12-5299-01 12 118198984 118198984 G A KSR2 Missense_Mutation p.P273L 0.44 deleterious(0) possibly_damaging(0.478) TCGA-12-5299-01 12 44782427 44782427 C T TMEM117 Missense_Mutation p.T506M 0.38 tolerated_low_confidence(0.12) benign(0.294) TCGA-12-5299-01 12 54405279 54405282 CACT - HOXC8 3'UTR 0.46 TCGA-12-5299-01 16 28846701 28846701 C T ATXN2L Missense_Mutation p.A889V 0.06 deleterious(0.03) benign(0.124) TCGA-12-5299-01 16 31384692 31384692 G A ITGAX Missense_Mutation p.R830H 0.44 deleterious(0) probably_damaging(0.937) TCGA-12-5299-01 17 39092707 39092707 C T KRT23 Missense_Mutation p.R50Q 0.50 tolerated(0.17) benign(0.093) TCGA-12-5299-01 17 39262036 39262036 C T KRTAP4-9 Silent p.S132S 0.35 TCGA-12-5299-01 17 54940030 54940030 G T DGKE Missense_Mutation p.G528W 0.09 deleterious(0.01) probably_damaging(1) TCGA-12-5299-01 17 73498864 73498864 G C CASKIN2 Missense_Mutation p.S764C 0.43 tolerated(0.05) benign(0.431) TCGA-12-5299-01 17 74017966 74017966 G A EVPL Silent p.G263G 0.30 TCGA-12-5299-01 19 41430242 41430242 G A CYP2B7P RNA 0.42 TCGA-12-5299-01 19 42855690 42855690 G A MEGF8 Missense_Mutation p.G922S 0.48 tolerated(0.41) benign(0.391) TCGA-12-5299-01 19 7585663 7585663 T C ZNF358 Missense_Mutation p.L512P 0.27 tolerated_low_confidence(0.26) benign(0) TCGA-12-5299-01 1 151798543 151798556 CCTAGCTCTCTCCC - RORC Intron 0.60 TCGA-12-5299-01 1 16390042 16390042 C T FAM131C Missense_Mutation p.V38M 0.28 tolerated(0.15) benign(0.03) TCGA-12-5299-01 1 236189279 236189279 G A NID1 Missense_Mutation p.S634L 0.42 deleterious(0) possibly_damaging(0.784) TCGA-12-5299-01 1 24857822 24857822 C T RCAN3 Nonsense_Mutation p.R104* 0.36 TCGA-12-5299-01 1 2522881 2522881 C T FAM213B 3'UTR 0.31 TCGA-12-5299-01 1 37285426 37285426 T C GRIK3 Missense_Mutation p.H595R 0.17 deleterious(0.01) probably_damaging(0.978) TCGA-12-5299-01 1 75679448 75679448 C G SLC44A5 Missense_Mutation p.R635T 0.42 deleterious(0) benign(0.168) TCGA-12-5299-01 21 45706905 45706905 G A AIRE Missense_Mutation p.V118I 0.57 tolerated(0.11) benign(0.001) TCGA-12-5299-01 2 190603404 190603404 G A ANKAR Silent p.L1232L 0.43 TCGA-12-5299-01 2 27600813 27600813 C T ZNF513 Missense_Mutation p.V409I 0.44 deleterious(0.04) benign(0.312) TCGA-12-5299-01 2 70439634 70439634 A G TIA1 3'UTR 0.56 TCGA-12-5299-01 3 142840212 142840212 A G CHST2 Missense_Mutation p.N185S 0.36 tolerated(0.49) probably_damaging(0.989) TCGA-12-5299-01 3 4669476 4669476 C T ITPR1 Missense_Mutation p.R65C 0.30 deleterious(0) probably_damaging(0.999) TCGA-12-5299-01 5 140181796 140181796 C T PCDHA3 Silent p.L338L 0.44 TCGA-12-5299-01 5 140741377 140741377 G A PCDHGB2 Missense_Mutation p.A559T 0.34 tolerated(0.09) possibly_damaging(0.468) TCGA-12-5299-01 5 176070180 176070180 C G EIF4E1B Missense_Mutation p.S38C 0.33 tolerated_low_confidence(0.12) possibly_damaging(0.533) TCGA-12-5299-01 5 78427099 78427099 T C BHMT 3'UTR 0.33 TCGA-12-5299-01 5 82808320 82808320 G A VCAN Intron 0.60 TCGA-12-5299-01 6 25917030 25917030 T A SLC17A2 Silent p.T271T 0.41 TCGA-12-5299-01 6 38834386 38834386 G A DNAH8 Missense_Mutation p.R1956H 0.47 probably_damaging(1) TCGA-12-5299-01 7 150649546 150649546 G A KCNH2 Silent p.F508F 0.24 TCGA-12-5299-01 7 4116751 4116751 C T SDK1 Silent p.D1044D 0.21 TCGA-12-5299-01 7 75517607 75517607 G T RHBDD2 Silent p.G345G 0.25 TCGA-12-5299-01 8 127569654 127569654 C A FAM84B 5'UTR 0.34 TCGA-12-5299-01 9 138676650 138676650 G A KCNT1 Missense_Mutation p.R1024H 0.68 deleterious(0.01) benign(0.185) TCGA-12-5299-01 9 8492897 8492897 C T PTPRD Missense_Mutation p.R811H 0.87 tolerated(0.08) probably_damaging(0.996) TCGA-12-5299-01 X 23953460 23953460 C T CXorf58 Nonsense_Mutation p.R235* 0.42 TCGA-12-5299-01 X 73068627 73068627 A T XIST RNA 0.38 TCGA-12-5301-01 10 11908649 11908649 G A PROSER2 Silent p.V86V 0.71 TCGA-12-5301-01 10 1229065 1229065 G A ADARB2 3'UTR 0.83 TCGA-12-5301-01 10 47086808 47086808 T A NPY4R Missense_Mutation p.L9M 0.29 tolerated_low_confidence(0.23) benign(0.035) TCGA-12-5301-01 10 47087737 47087737 C T NPY4R Silent p.N318N 0.29 TCGA-12-5301-01 10 75553915 75553915 C G ZSWIM8 Missense_Mutation p.A879G 0.72 tolerated(0.09) benign(0.044) TCGA-12-5301-01 11 55703444 55703444 G A OR5I1 Missense_Mutation p.R145W 0.40 tolerated(0.19) benign(0) TCGA-12-5301-01 11 6977376 6977376 C T ZNF215 Nonsense_Mutation p.R390* 0.36 TCGA-12-5301-01 11 7818191 7818191 G A OR5P2 Missense_Mutation p.A100V 0.42 tolerated(0.72) benign(0.005) TCGA-12-5301-01 12 101295584 101295584 A G ANO4 Silent p.G7G 0.44 TCGA-12-5301-01 12 109629703 109629703 G A ACACB Missense_Mutation p.A783T 0.05 deleterious(0.01) benign(0.049) TCGA-12-5301-01 12 32763711 32763711 A G FGD4 Silent p.K378K 0.37 TCGA-12-5301-01 12 52818468 52818468 C T KRT75 Missense_Mutation p.G497S 0.15 tolerated(0.44) unknown(0) TCGA-12-5301-01 12 52841572 52841572 C T KRT6B Missense_Mutation p.E472K 0.36 deleterious(0.01) possibly_damaging(0.844) TCGA-12-5301-01 12 98849154 98849154 G A SLC9A7P1 RNA 0.33 TCGA-12-5301-01 13 101707744 101707744 G A NALCN Missense_Mutation p.T1707I 0.41 tolerated_low_confidence(0.26) benign(0.006) TCGA-12-5301-01 13 25052379 25052379 T C PARP4 Missense_Mutation p.D495G 0.41 deleterious(0) possibly_damaging(0.665) TCGA-12-5301-01 13 36124652 36124652 G A NBEA Missense_Mutation p.M2208I 0.14 tolerated(0.17) benign(0.017) TCGA-12-5301-01 13 84455093 84455093 G C SLITRK1 Missense_Mutation p.L184V 0.41 deleterious(0) probably_damaging(0.986) TCGA-12-5301-01 14 21826560 21826560 C T SUPT16H Silent p.L776L 0.43 TCGA-12-5301-01 14 25044566 25044566 C T CTSG Silent p.A36A 0.39 TCGA-12-5301-01 14 94770669 94770669 G A SERPINA6 3'UTR 0.43 TCGA-12-5301-01 15 90348339 90348339 G C ANPEP Nonsense_Mutation p.Y289* 0.48 TCGA-12-5301-01 16 1306608 1306608 C T TPSD1 Silent p.R58R 0.39 TCGA-12-5301-01 16 24552109 24552109 A G RBBP6 Silent p.K54K 0.73 TCGA-12-5301-01 17 18047889 18047889 G A MYO15A Missense_Mutation p.V2086M 0.40 unknown(0) TCGA-12-5301-01 17 3119210 3119210 C T OR1A1 Missense_Mutation p.T99M 0.50 deleterious(0.05) benign(0.085) TCGA-12-5301-01 17 36484987 36484987 C T GPR179 Missense_Mutation p.G1489R 0.39 deleterious(0.05) probably_damaging(0.971) TCGA-12-5301-01 17 37844120 37844120 G A PGAP3 Missense_Mutation p.R50C 0.18 deleterious(0) possibly_damaging(0.856) TCGA-12-5301-01 17 7679385 7679385 G A DNAH2 Missense_Mutation p.R1622Q 0.49 possibly_damaging(0.768) TCGA-12-5301-01 17 78082609 78082609 G T GAA Silent p.R436R 0.54 TCGA-12-5301-01 18 12699056 12699056 G A CEP76 Missense_Mutation p.R148C 0.34 deleterious(0.01) benign(0.067) TCGA-12-5301-01 18 13826367 13826367 G T MC5R Silent p.L201L 0.39 TCGA-12-5301-01 18 14542740 14542740 G A POTEC Missense_Mutation p.R136C 0.36 deleterious(0.05) benign(0.004) TCGA-12-5301-01 18 55328473 55328473 C T ATP8B1 Silent p.V880V 0.31 TCGA-12-5301-01 19 36219962 36219962 G A KMT2B Silent p.G1588G 0.41 TCGA-12-5301-01 19 54314124 54314124 G A NLRP12 Silent p.S263S 0.36 TCGA-12-5301-01 19 6535064 6535064 C T TNFSF9 Missense_Mutation p.P251L 0.35 tolerated_low_confidence(0.43) benign(0.001) TCGA-12-5301-01 1 154062058 154062058 G A NUP210L Nonsense_Mutation p.R734* 0.38 TCGA-12-5301-01 1 169562857 169562857 C T SELP Missense_Mutation p.R798H 0.44 deleterious(0) benign(0.353) TCGA-12-5301-01 1 175067712 175067712 C T TNN Silent p.A700A 0.38 TCGA-12-5301-01 1 248790297 248790297 A G OR2T11 Silent p.L45L 0.39 TCGA-12-5301-01 20 42788558 42788558 G C JPH2 Missense_Mutation p.T290S 0.48 tolerated(0.47) benign(0.001) TCGA-12-5301-01 20 44828064 44828064 G A CDH22 Missense_Mutation p.A474V 0.41 tolerated(0.77) benign(0.408) TCGA-12-5301-01 21 30409731 30409731 G A USP16 Missense_Mutation p.V195M 0.45 deleterious(0.01) possibly_damaging(0.647) TCGA-12-5301-01 21 43160986 43160986 G A RIPK4 3'UTR 0.49 TCGA-12-5301-01 22 45944523 45944524 - CCAC FBLN1 Frame_Shift_Ins p.I493Pfs*36 0.59 TCGA-12-5301-01 22 50657589 50657589 G A TUBGCP6 Missense_Mutation p.H1512Y 0.48 tolerated(0.06) possibly_damaging(0.558) TCGA-12-5301-01 2 208866494 208866494 C T PLEKHM3 5'UTR 0.30 TCGA-12-5301-01 2 219295468 219295468 G C VIL1 Missense_Mutation p.Q323H 0.33 deleterious(0) benign(0.315) TCGA-12-5301-01 2 43768396 43768396 T G THADA Missense_Mutation p.S1056R 0.41 deleterious(0) probably_damaging(0.997) TCGA-12-5301-01 3 111846908 111846908 T C GCSAM Silent p.R35R 0.04 TCGA-12-5301-01 3 140978975 140978975 C T ACPL2 5'UTR 0.38 TCGA-12-5301-01 3 14861427 14861427 G A FGD5 Silent p.T283T 0.48 TCGA-12-5301-01 3 178916876 178916876 G A PIK3CA Missense_Mutation p.R88Q 0.43 tolerated(0.06) probably_damaging(0.998) TCGA-12-5301-01 3 178916936 178916936 G A PIK3CA Missense_Mutation p.R108H 0.41 deleterious(0.03) probably_damaging(0.983) TCGA-12-5301-01 3 195484190 195484190 G A MUC4 Missense_Mutation p.T4999M 0.37 benign(0.275) TCGA-12-5301-01 3 36874402 36874402 C T TRANK1 Silent p.S2180S 0.52 TCGA-12-5301-01 3 44611913 44611913 A C ZKSCAN7 Missense_Mutation p.K437N 0.38 deleterious(0) probably_damaging(0.992) TCGA-12-5301-01 3 49455400 49455400 C T AMT Missense_Mutation p.R295H 0.40 deleterious(0.02) possibly_damaging(0.776) TCGA-12-5301-01 3 53531323 53531323 C T CACNA1D Missense_Mutation p.T71I 0.34 tolerated_low_confidence(0.1) benign(0.067) TCGA-12-5301-01 4 154702560 154702560 C T SFRP2 3'UTR 0.49 TCGA-12-5301-01 4 55961059 55961059 G A KDR Missense_Mutation p.R961W 0.40 deleterious(0) possibly_damaging(0.846) TCGA-12-5301-01 4 680077 680077 C T MFSD7 Silent p.A103A 0.44 TCGA-12-5301-01 5 1225623 1225623 G A SLC6A18 Missense_Mutation p.A11T 0.42 tolerated(0.55) benign(0.048) TCGA-12-5301-01 5 127623046 127623046 C T FBN2 Silent p.T2278T 0.40 TCGA-12-5301-01 5 137426568 137426568 C T WNT8A Missense_Mutation p.R288C 0.34 tolerated(0.06) benign(0.001) TCGA-12-5301-01 5 160721276 160721276 A G GABRB2 Missense_Mutation p.F451L 0.35 tolerated(0.37) benign(0.002) TCGA-12-5301-01 5 175811029 175811030 - C NOP16 Frame_Shift_Ins p.F217Vfs*14 0.29 TCGA-12-5301-01 6 109850182 109850182 C A AK9 Intron 0.41 TCGA-12-5301-01 6 126080280 126080280 G A HEY2 Missense_Mutation p.A116T 0.49 deleterious(0) benign(0.011) TCGA-12-5301-01 6 57013164 57013164 A G ZNF451 Missense_Mutation p.T761A 0.39 deleterious(0.04) probably_damaging(0.998) TCGA-12-5301-01 6 74073368 74073368 C T KHDC3L Missense_Mutation p.R147C 0.34 tolerated(0.06) possibly_damaging(0.894) TCGA-12-5301-01 7 139833358 139833358 G A KDM7A Missense_Mutation p.R127C 0.23 deleterious(0.01) possibly_damaging(0.857) TCGA-12-5301-01 7 142568575 142568575 T A EPHB6 Missense_Mutation p.L995Q 0.28 deleterious(0.01) probably_damaging(1) TCGA-12-5301-01 7 142638355 142638355 C T KEL Missense_Mutation p.R728H 0.27 tolerated(0.29) benign(0.081) TCGA-12-5301-01 7 93072970 93072970 C T CALCR Missense_Mutation p.V284M 0.26 deleterious(0.03) benign(0.062) TCGA-12-5301-01 8 11058779 11058779 C T XKR6 Missense_Mutation p.V24M 0.16 deleterious_low_confidence(0.04) benign(0.365) TCGA-12-5301-01 9 116731434 116731434 C T ZNF618 Missense_Mutation p.A24V 0.42 tolerated_low_confidence(1) benign(0.001) TCGA-12-5301-01 9 136517375 136517375 G A DBH Missense_Mutation p.R448H 0.45 deleterious(0) probably_damaging(1) TCGA-12-5301-01 9 140127306 140127306 C T SLC34A3 Silent p.G125G 0.55 TCGA-12-5301-01 9 32784817 32784817 C T TMEM215 Silent p.N212N 0.37 TCGA-12-5301-01 9 36170861 36170861 C T CCIN Silent p.D454D 0.43 TCGA-12-5301-01 9 79634932 79634932 C T FOXB2 Missense_Mutation p.A121V 0.53 deleterious_low_confidence(0.03) unknown(0) TCGA-12-5301-01 X 138643736 138643736 C T F9 Nonsense_Mutation p.R298* 0.87 TCGA-14-0736-01 10 104309864 104309864 G T SUFU Splice_Site p.X152_splice 0.20 TCGA-14-0736-01 10 89693010 89693010 T - PTEN Splice_Site p.X164_splice 0.21 TCGA-14-0736-01 11 1956135 1956135 C T TNNT3 Missense_Mutation p.R223C 0.13 deleterious(0.03) benign(0.105) TCGA-14-0736-01 11 66813300 66813300 G T SYT12 Silent p.P348P 0.27 TCGA-14-0736-01 11 76912616 76912616 G A MYO7A Missense_Mutation p.R1659H 0.34 tolerated(0.08) possibly_damaging(0.839) TCGA-14-0736-01 12 31820621 31820621 A G METTL20 Silent p.R162R 0.28 TCGA-14-0736-01 12 48249514 48249514 G T VDR Silent p.T268T 0.04 TCGA-14-0736-01 12 48482618 48482618 G A SENP1 Nonsense_Mutation p.R116* 0.50 TCGA-14-0736-01 12 52309237 52309237 G A ACVRL1 Missense_Mutation p.R334H 0.44 deleterious(0) probably_damaging(0.996) TCGA-14-0736-01 12 52885373 52885373 C T KRT6A Missense_Mutation p.G230R 0.09 deleterious(0.01) benign(0.141) TCGA-14-0736-01 13 114535638 114535638 G A GAS6 Nonsense_Mutation p.R308* 0.11 TCGA-14-0736-01 13 25285667 25285667 C G ATP12A 3'UTR 0.10 TCGA-14-0736-01 14 71444116 71444116 A C PCNX Silent p.T354T 0.21 TCGA-14-0736-01 15 28386682 28386682 C T HERC2 Missense_Mutation p.A3971T 0.19 possibly_damaging(0.683) TCGA-14-0736-01 16 4563781 4563781 G T CDIP1 Missense_Mutation p.P53T 0.12 tolerated(0.06) possibly_damaging(0.908) TCGA-14-0736-01 16 55613030 55613030 G A LPCAT2 Missense_Mutation p.V442I 0.29 tolerated(0.31) benign(0.002) TCGA-14-0736-01 16 67662377 67662377 C A CTCF Missense_Mutation p.H541Q 0.55 deleterious(0) probably_damaging(0.999) TCGA-14-0736-01 16 8722617 8722617 G T METTL22 Missense_Mutation p.S55I 0.14 deleterious(0.02) benign(0.142) TCGA-14-0736-01 17 10408574 10408574 G A MYH1 Nonsense_Mutation p.R781* 0.33 TCGA-14-0736-01 17 12647528 12647528 G A MYOCD Missense_Mutation p.R249H 0.16 deleterious(0) probably_damaging(1) TCGA-14-0736-01 17 26968904 26968904 T C KIAA0100 Intron 0.17 TCGA-14-0736-01 17 3513847 3513847 T A SHPK 3'UTR 0.04 TCGA-14-0736-01 17 37903076 37903076 G A GRB7 Missense_Mutation p.V532M 0.14 deleterious(0) probably_damaging(0.999) TCGA-14-0736-01 17 39673104 39673104 C T KRT15 Missense_Mutation p.G232S 0.34 tolerated(1) benign(0.015) TCGA-14-0736-01 17 76967696 76967696 G A LGALS3BP Missense_Mutation p.R574C 0.29 deleterious(0) probably_damaging(1) TCGA-14-0736-01 18 34324125 34324125 C T FHOD3 Missense_Mutation p.S1162L 0.33 deleterious(0) probably_damaging(0.971) TCGA-14-0736-01 18 6311627 6311627 C T L3MBTL4 5'UTR 0.14 TCGA-14-0736-01 19 17749912 17749912 G A UNC13A Missense_Mutation p.R1021W 0.30 deleterious(0) probably_damaging(1) TCGA-14-0736-01 19 34263595 34263595 G A CHST8 Missense_Mutation p.R301Q 0.42 tolerated(0.17) possibly_damaging(0.68) TCGA-14-0736-01 1 100598481 100598481 G C SASS6 5'UTR 0.12 TCGA-14-0736-01 1 152286140 152286140 C T FLG Missense_Mutation p.A408T 0.30 probably_damaging(0.997) TCGA-14-0736-01 1 157660215 157660215 A G FCRL3 Missense_Mutation p.L507P 0.31 deleterious(0) probably_damaging(1) TCGA-14-0736-01 1 158651439 158651439 G A SPTA1 Missense_Mutation p.R137C 0.31 deleterious(0.04) benign(0.025) TCGA-14-0736-01 1 220236292 220236292 C A BPNT1 Missense_Mutation p.G160V 0.29 tolerated(0.07) probably_damaging(0.997) TCGA-14-0736-01 1 248570103 248570103 C A OR2T1 Silent p.R270R 0.13 TCGA-14-0736-01 1 25687174 25687174 G A TMEM50A Missense_Mutation p.R151H 0.04 deleterious(0.03) probably_damaging(0.992) TCGA-14-0736-01 1 29070361 29070361 A T YTHDF2 Missense_Mutation p.R527W 0.08 deleterious(0) probably_damaging(1) TCGA-14-0736-01 1 43649507 43649507 C T WDR65 Silent p.T240T 0.29 TCGA-14-0736-01 1 55569685 55569685 G A USP24 Missense_Mutation p.T1630I 0.33 deleterious(0.03) benign(0.26) TCGA-14-0736-01 20 31604885 31604885 A T BPIFB2 Missense_Mutation p.N185I 0.31 deleterious(0) probably_damaging(1) TCGA-14-0736-01 20 3654511 3654511 C T ADAM33 Silent p.V262V 0.44 TCGA-14-0736-01 20 42893109 42893109 G T GDAP1L1 Missense_Mutation p.V224L 0.52 tolerated(0.08) benign(0.444) TCGA-14-0736-01 20 45867833 45867833 C T ZMYND8 Silent p.P778P 0.20 TCGA-14-0736-01 20 50407692 50407692 C T SALL4 Missense_Mutation p.E444K 0.23 deleterious(0) benign(0.21) TCGA-14-0736-01 20 61527594 61527594 A G DIDO1 Silent p.P735P 0.15 TCGA-14-0736-01 21 33749497 33749497 A T URB1 Intron 0.12 TCGA-14-0736-01 22 24094999 24094999 A G VPREB3 3'UTR 0.25 TCGA-14-0736-01 22 32164813 32164813 C - DEPDC5 Frame_Shift_Del p.Y127Ifs*51 0.26 TCGA-14-0736-01 2 108604789 108604789 G T SLC5A7 Missense_Mutation p.A60S 0.12 tolerated(0.06) probably_damaging(0.979) TCGA-14-0736-01 2 116538476 116538476 G A DPP10 Missense_Mutation p.R467H 0.11 deleterious(0) probably_damaging(0.937) TCGA-14-0736-01 2 160205333 160205333 C G BAZ2B Missense_Mutation p.G1717R 0.07 probably_damaging(1) TCGA-14-0736-01 2 170099527 170099527 G A LRP2 Silent p.G1202G 0.43 TCGA-14-0736-01 2 21257741 21257741 T A APOB Missense_Mutation p.Q284L 0.08 benign(0.255) TCGA-14-0736-01 2 88423942 88423942 G A FABP1 Intron 0.24 TCGA-14-0736-01 3 128859259 128859259 C G ISY1 Missense_Mutation p.G124R 0.25 deleterious(0) probably_damaging(1) TCGA-14-0736-01 3 142525020 142525020 A G TRPC1 Missense_Mutation p.I775M 0.28 tolerated(0.33) benign(0.001) TCGA-14-0736-01 4 115760591 115760591 T C NDST4 Silent p.V743V 0.11 TCGA-14-0736-01 4 154557495 154557495 C G KIAA0922 Missense_Mutation p.L1534V 0.06 deleterious(0) probably_damaging(0.999) TCGA-14-0736-01 4 40440675 40440675 G A RBM47 Missense_Mutation p.P79L 0.45 deleterious(0.01) benign(0.28) TCGA-14-0736-01 4 759823 759823 G A PCGF3 Missense_Mutation p.A229T 0.08 tolerated(0.77) benign(0.005) TCGA-14-0736-01 5 137088823 137088823 A G HNRNPA0 3'UTR 0.21 TCGA-14-0736-01 5 137735562 137735562 G A KDM3B Nonsense_Mutation p.W1020* 0.09 TCGA-14-0736-01 5 179192631 179192631 C T MAML1 Missense_Mutation p.S207L 0.13 deleterious(0.02) benign(0.075) TCGA-14-0736-01 5 180582756 180582756 G A OR2V2 Missense_Mutation p.D272N 0.17 deleterious(0.01) probably_damaging(1) TCGA-14-0736-01 5 75587133 75587133 C T SV2C Missense_Mutation p.R409W 0.14 deleterious(0) probably_damaging(0.981) TCGA-14-0736-01 6 106552903 106552903 G A PRDM1 Missense_Mutation p.E290K 0.33 tolerated(0.06) benign(0.125) TCGA-14-0736-01 6 30157196 30157196 C G TRIM26 Missense_Mutation p.Q301H 0.15 tolerated(0.15) benign(0.026) TCGA-14-0736-01 6 42162430 42162430 C A GUCA1B Missense_Mutation p.K43N 0.17 deleterious(0) probably_damaging(0.999) TCGA-14-0736-01 7 100683095 100683095 A T MUC17 Missense_Mutation p.M2800L 0.06 unknown(0) TCGA-14-0736-01 7 134613649 134613649 C T CALD1 Silent p.N72N 0.22 TCGA-14-0736-01 7 143001813 143001813 G C CASP2 Missense_Mutation p.E388D 0.10 deleterious(0.01) possibly_damaging(0.528) TCGA-14-0736-01 7 23313943 23313943 G C GPNMB 3'UTR 0.85 TCGA-14-0736-01 7 27196021 27196021 G C HOXA7 Silent p.A48A 0.05 TCGA-14-0736-01 8 11162483 11162483 G A MTMR9 Missense_Mutation p.R184H 0.06 deleterious(0) probably_damaging(0.997) TCGA-14-0736-01 8 134262717 134262717 C T NDRG1 Missense_Mutation p.G222S 0.16 tolerated(0.89) benign(0.002) TCGA-14-0736-01 8 23305304 23305304 G A ENTPD4 Nonsense_Mutation p.R101* 0.51 TCGA-14-0736-01 8 30694722 30694722 T C TEX15 Silent p.P2643P 0.55 TCGA-14-0736-01 8 54141919 54141919 G A OPRK1 Nonsense_Mutation p.R361* 0.24 TCGA-14-0736-01 8 68421842 68421842 C A CPA6 Missense_Mutation p.W148C 0.40 deleterious(0) probably_damaging(1) TCGA-14-0736-01 9 113538170 113538170 G A MUSK Silent p.L429L 0.50 TCGA-14-0736-01 9 34622420 34622420 C A ARID3C Silent p.V324V 0.07 TCGA-14-0736-01 9 65508158 65508158 C T SPATA31A7 Silent p.R75R 0.19 TCGA-14-0736-01 X 127185877 127185877 T C ACTRT1 Silent p.Q103Q 0.32 TCGA-14-0736-01 X 2871265 2871265 C T ARSE Missense_Mutation p.G117R 0.10 deleterious(0) probably_damaging(0.96) TCGA-14-0740-01 10 124066797 124066797 T A BTBD16 Nonsense_Mutation p.Y295* 0.92 TCGA-14-0740-01 10 96443660 96443660 G A CYP2C18 Silent p.R28R 0.22 TCGA-14-0740-01 10 96612523 96612523 G A CYP2C19 Missense_Mutation p.R442H 0.05 deleterious(0.03) benign(0.346) TCGA-14-0740-01 11 51515606 51515606 G A OR4C46 Missense_Mutation p.E109K 0.46 deleterious_low_confidence(0) possibly_damaging(0.616) TCGA-14-0740-01 12 101794864 101794864 T A ARL1 Missense_Mutation p.K104N 0.31 deleterious(0.02) benign(0.402) TCGA-14-0740-01 12 69652697 69652697 C T CPSF6 Missense_Mutation p.P341L 0.42 tolerated(0.11) unknown(0) TCGA-14-0740-01 12 85255645 85255645 T A SLC6A15 Silent p.A653A 0.21 TCGA-14-0740-01 13 28537311 28537311 A G CDX2 Missense_Mutation p.S295P 0.46 tolerated_low_confidence(0.4) unknown(0) TCGA-14-0740-01 14 20841727 20841727 G A TEP1 Missense_Mutation p.S2207L 0.55 deleterious(0.01) possibly_damaging(0.642) TCGA-14-0740-01 15 100537641 100537641 G A ADAMTS17 Silent p.S915S 0.18 TCGA-14-0740-01 15 40911168 40911168 T G CASC5 Missense_Mutation p.L138V 0.42 deleterious(0) probably_damaging(0.998) TCGA-14-0740-01 15 44028227 44028227 G A RNU6-354P 5'Flank 0.53 TCGA-14-0740-01 16 25251946 25251946 C T ZKSCAN2 Missense_Mutation p.D699N 0.54 tolerated(0.59) benign(0.045) TCGA-14-0740-01 16 715649 715649 C T WDR90 Intron 0.35 TCGA-14-0740-01 17 10728644 10728644 C T PIRT Missense_Mutation p.G107R 0.36 deleterious(0) probably_damaging(1) TCGA-14-0740-01 17 43004364 43004364 C T KIF18B Missense_Mutation p.V787I 0.22 tolerated(0.44) benign(0.001) TCGA-14-0740-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.95 deleterious(0) probably_damaging(1) TCGA-14-0740-01 19 11616845 11616845 C T ECSIT 3'UTR 0.28 TCGA-14-0740-01 19 41250512 41250512 G A C19orf54 Missense_Mutation p.R157W 0.29 deleterious(0) possibly_damaging(0.784) TCGA-14-0740-01 19 42213611 42213611 C A CEA Missense_Mutation p.T26N 0.36 tolerated(0.16) possibly_damaging(0.579) TCGA-14-0740-01 19 54290976 54290976 C T MIR371A RNA 0.27 TCGA-14-0740-01 19 54312882 54312882 G A NLRP12 Silent p.R677R 0.26 TCGA-14-0740-01 19 6433733 6433733 T A SLC25A41 5'UTR 0.50 TCGA-14-0740-01 19 8196672 8196673 GG - FBN3 Frame_Shift_Del p.H586Lfs*79 0.24 TCGA-14-0740-01 19 9077406 9077406 C T MUC16 Nonsense_Mutation p.W3347* 0.58 TCGA-14-0740-01 1 117699373 117699373 G A VTCN1 Silent p.L90L 0.51 TCGA-14-0740-01 1 145440100 145440100 G A TXNIP Silent p.V178V 0.28 TCGA-14-0740-01 1 161203002 161203002 G A NR1I3 Missense_Mutation p.T122I 0.33 tolerated(0.11) benign(0.02) TCGA-14-0740-01 1 47402416 47402416 G A CYP4A11 Missense_Mutation p.R144W 0.26 deleterious(0.02) benign(0.373) TCGA-14-0740-01 1 63001286 63001286 C A DOCK7 Silent p.T1132T 0.47 TCGA-14-0740-01 20 52570143 52570143 T C BCAS1 Missense_Mutation p.K503R 0.26 deleterious(0.03) possibly_damaging(0.449) TCGA-14-0740-01 2 113537182 113537182 C T IL1A Missense_Mutation p.M127I 0.26 tolerated(0.7) benign(0) TCGA-14-0740-01 2 232127073 232127073 A T ARMC9 Missense_Mutation p.I361F 0.14 deleterious(0.03) possibly_damaging(0.724) TCGA-14-0740-01 2 27481038 27481038 G A SLC30A3 Missense_Mutation p.H139Y 0.19 tolerated(0.22) benign(0.326) TCGA-14-0740-01 3 109028077 109028077 C G DPPA2 Missense_Mutation p.K94N 0.04 tolerated(0.15) benign(0.026) TCGA-14-0740-01 3 130095557 130095557 C T COL6A5 Missense_Mutation p.T182I 0.48 deleterious(0) probably_damaging(0.996) TCGA-14-0740-01 3 51690165 51690165 C T RAD54L2 Nonsense_Mutation p.Q1069* 0.28 TCGA-14-0740-01 4 155720138 155720138 T C RBM46 Missense_Mutation p.F275S 0.35 deleterious(0) probably_damaging(0.997) TCGA-14-0740-01 4 55133558 55133558 T C PDGFRA Missense_Mutation p.Y288H 0.53 deleterious(0) probably_damaging(0.998) TCGA-14-0740-01 5 138221907 138221907 C T CTNNA1 Missense_Mutation p.R357C 0.17 deleterious(0.04) benign(0.033) TCGA-14-0740-01 5 140782734 140782734 C T PCDHGA9 Missense_Mutation p.T72M 0.30 tolerated_low_confidence(0.07) possibly_damaging(0.458) TCGA-14-0740-01 5 1494825 1494825 C A LPCAT1 Silent p.P161P 0.65 TCGA-14-0740-01 5 180377067 180377067 C T BTNL8 Silent p.Y342Y 0.33 TCGA-14-0740-01 5 53751847 53751847 C T HSPB3 Silent p.D76D 0.26 TCGA-14-0740-01 6 117023258 117023258 C G KPNA5 Missense_Mutation p.A171G 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-14-0740-01 6 144757266 144757266 A T UTRN Missense_Mutation p.T351S 0.19 deleterious(0) possibly_damaging(0.839) TCGA-14-0740-01 6 161056199 161056199 G A LPA Missense_Mutation p.P344L 0.02 tolerated(0.2) benign(0.018) TCGA-14-0740-01 7 142013437 142013437 C T TRBV4-1 Missense_Mutation p.H98Y 0.22 deleterious(0.03) benign(0.236) TCGA-14-0740-01 7 33057201 33057201 C A NT5C3A Missense_Mutation p.E186D 0.17 tolerated(0.23) benign(0.002) TCGA-14-0740-01 7 86811558 86811558 A G DMTF1 Missense_Mutation p.H242R 0.11 deleterious(0) probably_damaging(0.993) TCGA-14-0740-01 8 135613849 135613849 C T ZFAT Missense_Mutation p.A705T 0.44 tolerated(0.34) benign(0.01) TCGA-14-0740-01 8 27296903 27296903 G A PTK2B Missense_Mutation p.V608I 0.18 deleterious(0) possibly_damaging(0.76) TCGA-14-0740-01 8 95264452 95264452 C T GEM Splice_Site p.X137_splice 0.47 TCGA-14-0740-01 9 101788194 101788194 G A COL15A1 Silent p.E663E 0.68 TCGA-14-0740-01 9 107555100 107555100 C G ABCA1 Missense_Mutation p.Q1908H 0.27 tolerated(0.2) benign(0.005) TCGA-14-0740-01 9 136031442 136031442 G T GBGT1 Missense_Mutation p.L50M 1.00 tolerated(0.08) possibly_damaging(0.746) TCGA-14-0740-01 9 439344 439344 G A DOCK8 Missense_Mutation p.G1727S 0.87 deleterious(0.02) probably_damaging(1) TCGA-14-0740-01 X 151283896 151283896 C T RP11-1007I13.4 RNA 0.41 TCGA-14-0740-01 X 153490645 153490645 C T OPN1MW2 Silent p.V127V 0.44 TCGA-14-0740-01 X 55650332 55650332 G C FOXR2 Missense_Mutation p.R63T 0.34 tolerated(0.07) benign(0.206) TCGA-14-0740-01 X 73049038 73049038 A G XIST RNA 0.45 TCGA-14-0781-01 10 89711891 89711891 G A PTEN Missense_Mutation p.S170N 0.15 deleterious(0) probably_damaging(0.998) TCGA-14-0781-01 11 102646042 102646042 G A MMP10 Nonsense_Mutation p.R315* 0.17 TCGA-14-0781-01 11 63069908 63069908 G A SLC22A10 Missense_Mutation p.R393Q 0.11 tolerated(0.11) benign(0.223) TCGA-14-0781-01 11 64821985 64821985 C T NAALADL1 Missense_Mutation p.G277R 0.18 deleterious(0) benign(0.348) TCGA-14-0781-01 11 67765220 67765220 C T UNC93B1 Silent p.R277R 0.07 TCGA-14-0781-01 12 14982282 14982282 A G ART4 3'UTR 0.16 TCGA-14-0781-01 12 5020794 5020794 C T KCNA1 Missense_Mutation p.R84C 0.08 deleterious(0) probably_damaging(1) TCGA-14-0781-01 12 97085019 97085019 C T C12orf55 Silent p.D2065D 0.14 TCGA-14-0781-01 13 61986212 61986212 C G PCDH20 Missense_Mutation p.V674L 0.12 tolerated(0.07) possibly_damaging(0.612) TCGA-14-0781-01 14 42355895 42355895 C T LRFN5 Missense_Mutation p.R23C 0.17 deleterious(0) probably_damaging(0.998) TCGA-14-0781-01 14 88478097 88478097 G A GPR65 Nonsense_Mutation p.W302* 0.23 TCGA-14-0781-01 15 101595206 101595206 C T LRRK1 Silent p.I1370I 0.14 TCGA-14-0781-01 15 99454571 99454571 C G IGF1R Missense_Mutation p.S497C 0.15 tolerated(0.08) possibly_damaging(0.806) TCGA-14-0781-01 16 27225037 27225037 C T KDM8 Silent p.G248G 0.09 TCGA-14-0781-01 16 28354478 28354478 G A NPIPB6 Missense_Mutation p.S243F 0.04 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-14-0781-01 16 75564022 75564022 G A CHST5 Silent p.D87D 0.07 TCGA-14-0781-01 17 60107352 60107352 C G MED13 Missense_Mutation p.K344N 0.16 tolerated(0.14) probably_damaging(0.984) TCGA-14-0781-01 18 7011417 7011417 G A LAMA1 Missense_Mutation p.T1190M 0.21 deleterious(0) probably_damaging(0.953) TCGA-14-0781-01 19 9088981 9088981 G A MUC16 Missense_Mutation p.T945M 0.13 unknown(0) TCGA-14-0781-01 1 197071366 197071366 T G ASPM Missense_Mutation p.T2339P 0.12 deleterious(0.02) possibly_damaging(0.868) TCGA-14-0781-01 21 45732952 45732952 C T PFKL Silent p.D173D 0.05 TCGA-14-0781-01 22 44536022 44536022 C T PARVB Silent p.F270F 0.14 TCGA-14-0781-01 2 192711670 192711670 G A SDPR 5'UTR 0.07 TCGA-14-0781-01 2 202483659 202483659 G - ALS2CR11 Frame_Shift_Del p.N65Kfs*12 0.17 TCGA-14-0781-01 2 21238335 21238335 C T APOB Missense_Mutation p.A1139T 0.07 benign(0) TCGA-14-0781-01 5 40853877 40853877 T - CARD6 Frame_Shift_Del p.F815Lfs*21 0.12 TCGA-14-0781-01 5 45262241 45262241 C T HCN1 Missense_Mutation p.V819M 0.16 tolerated_low_confidence(0.23) benign(0.001) TCGA-14-0781-01 5 78326739 78326739 G T DMGDH Missense_Mutation p.L534I 0.15 deleterious(0.03) probably_damaging(0.913) TCGA-14-0781-01 6 10529185 10529186 TT - GCNT2 Frame_Shift_Del p.L14Hfs*13 0.10 TCGA-14-0781-01 6 129823804 129823804 G A LAMA2 Missense_Mutation p.G2749S 0.07 tolerated(0.27) benign(0.035) TCGA-14-0781-01 6 144086812 144086812 T C PHACTR2 Missense_Mutation p.V370A 0.13 tolerated_low_confidence(0.73) benign(0.012) TCGA-14-0781-01 6 158579375 158579375 G A SERAC1 Silent p.C7C 0.14 TCGA-14-0781-01 7 100411279 100411279 C T EPHB4 Missense_Mutation p.G584E 0.09 tolerated(0.12) probably_damaging(0.953) TCGA-14-0781-01 7 121960313 121960313 C T CADPS2 Missense_Mutation p.R1266H 0.14 deleterious(0) probably_damaging(0.999) TCGA-14-0781-01 7 82579939 82579939 G T PCLO Missense_Mutation p.P3322H 0.07 unknown(0) TCGA-14-0781-01 9 14824887 14824887 G C FREM1 Missense_Mutation p.T662S 0.29 tolerated(0.05) possibly_damaging(0.893) TCGA-14-0781-01 X 127185485 127185485 C T ACTRT1 Missense_Mutation p.R234Q 0.27 tolerated(0.09) benign(0.038) TCGA-14-0781-01 X 48650419 48650419 C A GATA1 Missense_Mutation p.T130N 0.16 tolerated(0.18) benign(0) TCGA-14-0786-01 10 73521395 73521395 C G C10orf54 Missense_Mutation p.E157D 0.17 tolerated(0.19) benign(0.011) TCGA-14-0786-01 10 7679260 7679260 C T ITIH5 Missense_Mutation p.A195T 0.85 tolerated(0.62) benign(0.22) TCGA-14-0786-01 11 18487327 18487327 C G LDHAL6A Missense_Mutation p.H130D 0.26 tolerated(1) benign(0.005) TCGA-14-0786-01 11 22215065 22215065 G A ANO5 Silent p.V9V 0.59 TCGA-14-0786-01 11 2592573 2592573 C T KCNQ1 Missense_Mutation p.A208V 0.48 deleterious(0) probably_damaging(0.992) TCGA-14-0786-01 11 59480721 59480721 G A OR10V1 Silent p.L200L 0.38 TCGA-14-0786-01 12 62777954 62777954 T C USP15 Silent p.C448C 0.42 TCGA-14-0786-01 14 70926319 70926319 C T ADAM21 Silent p.V701V 0.46 TCGA-14-0786-01 16 66612967 66612967 C G CMTM1 3'UTR 0.07 TCGA-14-0786-01 16 67429021 67429021 A T ZDHHC1 Missense_Mutation p.S372T 0.29 tolerated_low_confidence(1) benign(0) TCGA-14-0786-01 18 34376733 34376733 C T TPGS2 3'UTR 0.55 TCGA-14-0786-01 19 1042173 1042173 C T ABCA7 Missense_Mutation p.T138M 0.20 tolerated(0.09) benign(0.163) TCGA-14-0786-01 19 11795746 11795746 C G ZNF833P RNA 0.33 TCGA-14-0786-01 19 11795759 11795759 C T ZNF833P RNA 0.29 TCGA-14-0786-01 19 11796182 11796182 C T ZNF833P RNA 0.31 TCGA-14-0786-01 19 46003206 46003206 G C PPM1N Splice_Site p.X314_splice 0.42 TCGA-14-0786-01 19 55174403 55174403 G A LILRB4 5'UTR 0.45 TCGA-14-0786-01 1 147380346 147380346 G A GJA8 Silent p.P88P 0.53 TCGA-14-0786-01 1 237774131 237774131 C T RYR2 Missense_Mutation p.R1585C 0.62 probably_damaging(0.98) TCGA-14-0786-01 1 3548093 3548093 C T WRAP73 Missense_Mutation p.G393R 0.40 deleterious(0) probably_damaging(0.935) TCGA-14-0786-01 1 36859745 36859745 T C LSM10 5'UTR 0.56 TCGA-14-0786-01 21 31859635 31859635 G T KRTAP19-2 Missense_Mutation p.S11R 0.37 deleterious_low_confidence(0) unknown(0) TCGA-14-0786-01 21 43803237 43803237 G A TMPRSS3 Silent p.P229P 0.35 TCGA-14-0786-01 22 32334001 32334001 T C C22orf24 Missense_Mutation p.T18A 0.44 tolerated_low_confidence(0.1) benign(0.007) TCGA-14-0786-01 2 107460204 107460204 C T ST6GAL2 Missense_Mutation p.R77H 0.36 benign(0.001) TCGA-14-0786-01 2 153551069 153551069 T C PRPF40A Missense_Mutation p.Q95R 0.08 tolerated(0.49) benign(0.275) TCGA-14-0786-01 2 170493100 170493100 A C PPIG Missense_Mutation p.K444N 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-14-0786-01 2 27465785 27465785 C A CAD Missense_Mutation p.L2142I 0.43 deleterious(0.05) possibly_damaging(0.597) TCGA-14-0786-01 2 37501816 37501816 G C PRKD3 Missense_Mutation p.R467G 0.45 tolerated(0.23) benign(0.005) TCGA-14-0786-01 3 122459942 122459942 G A HSPBAP1 Missense_Mutation p.R282W 0.49 deleterious(0) probably_damaging(1) TCGA-14-0786-01 3 14802983 14802983 T A C3orf20 Missense_Mutation p.F786I 0.45 deleterious(0) possibly_damaging(0.766) TCGA-14-0786-01 3 15079601 15079601 C G NR2C2 Silent p.G508G 0.41 TCGA-14-0786-01 4 102946614 102946614 G A BANK1 Silent p.P514P 0.38 TCGA-14-0786-01 4 113353098 113353098 C - ALPK1 Frame_Shift_Del p.L800* 0.36 TCGA-14-0786-01 4 153897835 153897835 G A FHDC1 Missense_Mutation p.R1131Q 0.44 tolerated(0.24) benign(0.027) TCGA-14-0786-01 4 20541195 20541195 C A SLIT2 Missense_Mutation p.S655Y 0.40 tolerated(0.05) probably_damaging(0.989) TCGA-14-0786-01 4 70592751 70592751 G A SULT1B1 3'UTR 0.46 TCGA-14-0786-01 5 145719603 145719603 C A POU4F3 Missense_Mutation p.Q205K 0.05 deleterious(0) probably_damaging(1) TCGA-14-0786-01 6 74229196 74229196 A C EEF1A1 Missense_Mutation p.L63R 0.40 deleterious_low_confidence(0.01) probably_damaging(1) TCGA-14-0786-01 7 106829793 106829793 C T HBP1 Silent p.G274G 0.28 TCGA-14-0786-01 7 38725660 38725660 G A FAM183B 5'UTR 0.29 TCGA-14-0786-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.84 deleterious(0.02) probably_damaging(0.974) TCGA-14-0786-01 8 118170045 118170045 G A SLC30A8 Missense_Mutation p.M178I 0.36 deleterious(0.01) probably_damaging(0.934) TCGA-14-0786-01 8 145662013 145662013 C T TONSL Missense_Mutation p.D648N 0.37 deleterious(0.01) probably_damaging(0.929) TCGA-14-0786-01 9 136136731 136136731 G A ABO RNA 0.50 TCGA-14-0786-01 X 118222577 118222577 G A KIAA1210 Silent p.D872D 0.29 TCGA-14-0786-01 X 141291256 141291256 T G MAGEC2 Missense_Mutation p.K173T 0.38 deleterious(0) benign(0.09) TCGA-14-0786-01 X 48209558 48209558 C T SSX3 Splice_Site p.X111_splice 0.41 TCGA-14-0786-01 X 48822565 48822565 G A KCND1 Missense_Mutation p.R539C 0.35 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-14-0786-01 X 5811156 5811156 G T NLGN4X Missense_Mutation p.T718K 0.34 tolerated_low_confidence(0.32) benign(0.081) TCGA-14-0786-01 X 73045082 73045082 A C XIST RNA 0.42 TCGA-14-0787-01 10 118957199 118957199 G T KCNK18 Missense_Mutation p.R67I 0.73 tolerated(0.47) benign(0.05) TCGA-14-0787-01 10 121341480 121341480 T - TIAL1 Frame_Shift_Del p.T126Qfs*20 0.50 TCGA-14-0787-01 11 102706774 102706774 G A MMP3 3'UTR 0.43 TCGA-14-0787-01 11 55904448 55904448 C T OR8J3 Silent p.T249T 0.38 TCGA-14-0787-01 11 59610023 59610023 G T GIF Missense_Mutation p.P135H 0.28 deleterious(0.01) probably_damaging(0.995) TCGA-14-0787-01 11 61584018 61584018 T A FADS1 Intron 0.20 TCGA-14-0787-01 11 6647232 6647232 C T DCHS1 Missense_Mutation p.R2217H 0.46 tolerated(0.13) benign(0.005) TCGA-14-0787-01 11 89075338 89075338 C A NOX4 Missense_Mutation p.G414V 0.12 deleterious(0) probably_damaging(1) TCGA-14-0787-01 12 57424856 57424856 G C MYO1A Missense_Mutation p.Q818E 0.41 tolerated(0.54) benign(0.001) TCGA-14-0787-01 12 6464465 6464465 G A SCNN1A Silent p.G431G 0.35 TCGA-14-0787-01 12 78574731 78574731 G A NAV3 Silent p.P1844P 0.41 TCGA-14-0787-01 14 20296487 20296487 G A OR4N2 Missense_Mutation p.V294M 0.14 tolerated(0.71) possibly_damaging(0.818) TCGA-14-0787-01 14 20345116 20345132 CAGAGGATCATCTAAGG TA OR4K2 In_Frame_Del p.R231_A236delinsT 0.09 TCGA-14-0787-01 14 38723845 38723845 G T CLEC14A Missense_Mutation p.N461K 0.44 deleterious_low_confidence(0.01) benign(0.014) TCGA-14-0787-01 14 51387718 51387718 C T PYGL Missense_Mutation p.R243H 0.34 deleterious(0) probably_damaging(0.978) TCGA-14-0787-01 14 70442486 70442486 C A SMOC1 Missense_Mutation p.P145T 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-14-0787-01 15 24921536 24921536 C T NPAP1 Silent p.D174D 0.42 TCGA-14-0787-01 16 5046964 5046964 G A SEC14L5 Missense_Mutation p.V297M 0.30 deleterious(0.01) probably_damaging(0.99) TCGA-14-0787-01 17 36486234 36486234 T C GPR179 Missense_Mutation p.H1073R 0.51 deleterious(0.04) probably_damaging(0.999) TCGA-14-0787-01 17 74077573 74077573 G A EXOC7 3'Flank 0.40 TCGA-14-0787-01 19 10467283 10467283 G A TYK2 Missense_Mutation p.R860C 0.79 deleterious(0.04) possibly_damaging(0.808) TCGA-14-0787-01 19 2037867 2037867 C T MKNK2 3'UTR 0.29 TCGA-14-0787-01 19 3449019 3449019 G A NFIC Silent p.S322S 0.15 TCGA-14-0787-01 19 55284986 55284986 C T KIR2DL1 Missense_Mutation p.T91M 0.78 tolerated(0.07) benign(0.024) TCGA-14-0787-01 1 186099788 186099788 C T HMCN1 Missense_Mutation p.R4397W 0.30 possibly_damaging(0.863) TCGA-14-0787-01 1 197522236 197522236 C T DENND1B Missense_Mutation p.D386N 0.15 tolerated(0.08) benign(0.089) TCGA-14-0787-01 1 237791221 237791221 G A RYR2 Missense_Mutation p.G2094D 0.41 probably_damaging(0.998) TCGA-14-0787-01 1 38435290 38435290 C A SF3A3 Nonsense_Mutation p.E375* 0.33 TCGA-14-0787-01 20 25011617 25011617 C G ACSS1 Intron 0.35 TCGA-14-0787-01 20 52561384 52561384 C T BCAS1 3'UTR 0.26 TCGA-14-0787-01 2 108455386 108455386 T A RGPD4 Missense_Mutation p.L124H 0.39 tolerated(0.1) probably_damaging(0.926) TCGA-14-0787-01 2 144765034 144765034 A T GTDC1 Missense_Mutation p.V197D 0.31 tolerated_low_confidence(0.3) benign(0.028) TCGA-14-0787-01 2 202401017 202401017 G A ALS2CR11 Silent p.G411G 0.48 TCGA-14-0787-01 2 202483675 202483675 G A ALS2CR11 Missense_Mutation p.T60M 0.41 tolerated(0.16) benign(0.004) TCGA-14-0787-01 2 225266256 225266256 G A FAM124B Missense_Mutation p.P77L 0.41 tolerated(1) benign(0) TCGA-14-0787-01 2 238672144 238672144 G A LRRFIP1 Silent p.T596T 0.35 TCGA-14-0787-01 2 242142864 242142864 C T ANO7 Silent p.H334H 0.43 TCGA-14-0787-01 2 64147109 64147109 C T VPS54 Missense_Mutation p.R691H 0.47 deleterious(0.01) probably_damaging(0.98) TCGA-14-0787-01 4 48569356 48569356 C T FRYL Silent p.L1026L 0.41 TCGA-14-0787-01 4 76722293 76722293 A G USO1 Silent p.K651K 0.47 TCGA-14-0787-01 5 150922879 150922879 C T FAT2 Silent p.P2603P 0.41 TCGA-14-0787-01 5 176314737 176314737 C T HK3 Missense_Mutation p.V439I 0.38 tolerated(0.56) benign(0.002) TCGA-14-0787-01 7 142569333 142569333 G A TRPV6 3'UTR 0.19 TCGA-14-0787-01 7 149493732 149493732 G T SSPO RNA 0.22 TCGA-14-0787-01 7 2963984 2963984 C T CARD11 Missense_Mutation p.R608H 0.26 tolerated(0.21) benign(0.005) TCGA-14-0787-01 8 124109565 124109565 C T TBC1D31 Missense_Mutation p.H239Y 0.35 tolerated(0.16) benign(0.021) TCGA-14-0787-01 9 139327520 139327520 C G INPP5E Missense_Mutation p.E389D 0.13 deleterious(0) benign(0.136) TCGA-14-0787-01 X 73811411 73811411 C T RLIM Missense_Mutation p.G580D 0.81 deleterious(0.04) probably_damaging(0.99) TCGA-14-0789-01 11 117985881 117985881 G A TMPRSS4 Silent p.A346A 0.25 TCGA-14-0789-01 11 120998873 120998873 C T TECTA Silent p.Y729Y 0.23 TCGA-14-0789-01 11 20448405 20448405 G A PRMT3 Silent p.E329E 0.17 TCGA-14-0789-01 11 5510222 5510222 T A OR52D1 Missense_Mutation p.S96T 0.27 tolerated(0.2) benign(0.015) TCGA-14-0789-01 12 119568488 119568488 G A SRRM4 Missense_Mutation p.R207H 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-14-0789-01 12 120138625 120138625 C T CIT Missense_Mutation p.G1850R 0.26 deleterious(0) probably_damaging(1) TCGA-14-0789-01 12 12044015 12044015 C T ETV6 3'UTR 0.28 TCGA-14-0789-01 12 25148921 25148921 C T C12orf77 Missense_Mutation p.R76Q 0.28 tolerated_low_confidence(0.06) benign(0.016) TCGA-14-0789-01 12 52309923 52309923 G A ACVRL1 Silent p.Q384Q 0.27 TCGA-14-0789-01 12 53687195 53687195 C T ESPL1 Silent p.P2100P 0.18 TCGA-14-0789-01 13 28794510 28794510 C T PAN3 Missense_Mutation p.A332V 0.28 tolerated(0.05) possibly_damaging(0.551) TCGA-14-0789-01 14 105241276 105241276 G A AKT1 Missense_Mutation p.T211I 0.26 tolerated(0.21) possibly_damaging(0.831) TCGA-14-0789-01 14 38311622 38311622 C A TTC6 3'UTR 0.43 TCGA-14-0789-01 14 92470681 92470681 C T TRIP11 Silent p.K1213K 0.24 TCGA-14-0789-01 14 94203651 94203651 C T PRIMA1 Missense_Mutation p.V99I 0.22 deleterious(0.05) probably_damaging(0.998) TCGA-14-0789-01 15 26793162 26793162 G T GABRB3 Silent p.I400I 0.25 TCGA-14-0789-01 15 31776752 31776752 C T OTUD7A Missense_Mutation p.R509H 0.34 deleterious(0) probably_damaging(0.994) TCGA-14-0789-01 15 33765674 33765674 T A RYR3 Missense_Mutation p.F36I 0.24 benign(0.114) TCGA-14-0789-01 15 45386398 45386398 C T DUOX2 Missense_Mutation p.V1533I 0.24 tolerated(1) benign(0.002) TCGA-14-0789-01 15 75189293 75189293 C T MPI Intron 0.22 TCGA-14-0789-01 16 1262094 1262094 G A CACNA1H Missense_Mutation p.R1572Q 0.30 deleterious(0.05) benign(0.022) TCGA-14-0789-01 16 21213466 21213466 G A ZP2 Missense_Mutation p.R416W 0.24 tolerated(0.18) benign(0.168) TCGA-14-0789-01 16 22563734 22563734 C A RP11-368J21.3 RNA 0.12 TCGA-14-0789-01 17 29556481 29556481 C T NF1 Nonsense_Mutation p.Q950* 0.26 TCGA-14-0789-01 17 40169441 40169441 G T NKIRAS2 5'UTR 0.29 TCGA-14-0789-01 18 14542738 14542738 A G POTEC Silent p.R136R 0.21 TCGA-14-0789-01 18 56587754 56587754 C T ZNF532 Silent p.D745D 0.24 TCGA-14-0789-01 18 74154336 74154336 G A ZNF516 Silent p.T225T 0.24 TCGA-14-0789-01 19 11224366 11224366 G C LDLR Missense_Mutation p.G505A 0.16 deleterious(0.03) probably_damaging(0.958) TCGA-14-0789-01 19 14591540 14591540 C G GIPC1 Silent p.L113L 0.16 TCGA-14-0789-01 19 40521654 40521656 ATC - ZNF546 In_Frame_Del p.H827del 0.23 TCGA-14-0789-01 19 50243159 50243159 G A TSKS Silent p.H551H 0.19 TCGA-14-0789-01 19 8807821 8807821 C T ACTL9 Missense_Mutation p.V411M 0.17 deleterious(0) probably_damaging(0.999) TCGA-14-0789-01 1 109472462 109472462 G C GPSM2 Missense_Mutation p.R652T 0.24 tolerated(0.44) benign(0.001) TCGA-14-0789-01 1 120165477 120165477 C T ZNF697 Missense_Mutation p.E497K 0.27 deleterious(0.02) probably_damaging(0.996) TCGA-14-0789-01 1 144886204 144886204 C T PDE4DIP Silent p.R1010R 0.12 TCGA-14-0789-01 1 151774395 151774395 G A LINGO4 Silent p.C262C 0.25 TCGA-14-0789-01 1 152329096 152329096 T G FLG2 Missense_Mutation p.Q389P 0.26 unknown(0) TCGA-14-0789-01 1 152383181 152383181 G A CRNN Missense_Mutation p.A126V 0.26 tolerated(0.46) benign(0.011) TCGA-14-0789-01 1 153390660 153390660 G A S100A7A Silent p.T34T 0.20 TCGA-14-0789-01 1 154557202 154557202 C T ADAR 3'UTR 0.23 TCGA-14-0789-01 1 17030453 17030453 G A ESPNP RNA 0.05 TCGA-14-0789-01 1 186052023 186052023 C A HMCN1 Silent p.I2938I 0.31 TCGA-14-0789-01 1 19584462 19584462 C T MRTO4 Silent p.P159P 0.22 TCGA-14-0789-01 1 222713493 222713493 G A HHIPL2 Nonsense_Mutation p.R437* 0.29 TCGA-14-0789-01 1 237802413 237802413 C T RYR2 Missense_Mutation p.L2343F 0.29 probably_damaging(0.987) TCGA-14-0789-01 1 40149794 40149794 C T HPCAL4 Missense_Mutation p.A65T 0.33 deleterious(0.01) possibly_damaging(0.89) TCGA-14-0789-01 1 6189033 6189033 C A CHD5 Missense_Mutation p.A1162S 0.27 deleterious(0.02) probably_damaging(0.985) TCGA-14-0789-01 20 2969091 2969091 G A PTPRA Missense_Mutation p.D237N 0.25 deleterious(0.03) probably_damaging(0.989) TCGA-14-0789-01 20 43936814 43936814 C A MATN4 Splice_Site 0.23 TCGA-14-0789-01 20 44698964 44698964 C T NCOA5 Missense_Mutation p.V84M 0.29 tolerated_low_confidence(0.26) unknown(0) TCGA-14-0789-01 20 61598186 61598186 G A SLC17A9 Intron 0.22 TCGA-14-0789-01 21 45152174 45152174 C G PDXK Intron 0.17 TCGA-14-0789-01 2 141081530 141081530 T C LRP1B Missense_Mutation p.E4149G 0.30 benign(0.403) TCGA-14-0789-01 2 17698942 17698942 T - RAD51AP2 Frame_Shift_Del p.K247Nfs*11 0.24 TCGA-14-0789-01 2 201437974 201437974 G A SGOL2 Missense_Mutation p.E969K 0.24 tolerated(0.22) benign(0.162) TCGA-14-0789-01 2 231109774 231109774 A T SP140 Missense_Mutation p.S215C 0.22 tolerated(0.13) possibly_damaging(0.887) TCGA-14-0789-01 2 234545195 234545195 C T UGT1A10 Silent p.P9P 0.24 TCGA-14-0789-01 2 28761204 28761204 G A PLB1 Missense_Mutation p.G192S 0.25 tolerated(0.43) benign(0.001) TCGA-14-0789-01 3 138417859 138417859 C T PIK3CB Missense_Mutation p.E554K 0.29 deleterious(0) possibly_damaging(0.781) TCGA-14-0789-01 3 405060 405060 A T CHL1 Missense_Mutation p.I527F 0.24 deleterious(0) probably_damaging(0.94) TCGA-14-0789-01 3 52443911 52443911 C T BAP1 5'UTR 0.15 TCGA-14-0789-01 3 54930849 54930849 G A CACNA2D3 Missense_Mutation p.A774T 0.24 deleterious(0.01) probably_damaging(0.995) TCGA-14-0789-01 4 155507297 155507297 G T FGA Nonsense_Mutation p.Y428* 0.22 TCGA-14-0789-01 4 38777060 38777060 G A TLR10 Missense_Mutation p.T51M 0.24 deleterious(0.01) possibly_damaging(0.892) TCGA-14-0789-01 4 77304876 77304876 C T CCDC158 Missense_Mutation p.E248K 0.25 deleterious(0.03) probably_damaging(0.979) TCGA-14-0789-01 4 995507 995507 C T IDUA Silent p.R210R 0.21 TCGA-14-0789-01 5 140053903 140053903 C T HARS Missense_Mutation p.R490Q 0.17 tolerated(0.27) benign(0.003) TCGA-14-0789-01 5 140174750 140174750 G A PCDHA2 Silent p.A67A 0.27 TCGA-14-0789-01 5 140503471 140503471 G A PCDHB4 Missense_Mutation p.E631K 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.477) TCGA-14-0789-01 5 79378941 79378941 A G THBS4 Missense_Mutation p.N955D 0.24 tolerated_low_confidence(0.18) benign(0.008) TCGA-14-0789-01 6 117128089 117128089 C T GPRC6A Missense_Mutation p.R260Q 0.23 tolerated(1) benign(0.001) TCGA-14-0789-01 6 161020531 161020531 C T LPA Splice_Site p.X1096_splice 0.22 TCGA-14-0789-01 6 32118160 32118160 G A PRRT1 Silent p.V181V 0.22 TCGA-14-0789-01 6 33633622 33633622 C T ITPR3 Nonsense_Mutation p.Q474* 0.23 TCGA-14-0789-01 6 43748479 43748479 C T VEGFA Nonsense_Mutation p.R325* 0.25 TCGA-14-0789-01 7 123269046 123269046 A G ASB15 Missense_Mutation p.D333G 0.21 deleterious(0) probably_damaging(0.997) TCGA-14-0789-01 7 142482377 142482377 C T PRSS3P2 RNA 0.06 TCGA-14-0789-01 7 55238439 55238439 G A EGFR Intron 0.07 TCGA-14-0789-01 7 55238870 55238870 G A EGFR Missense_Mutation p.C628Y 0.10 deleterious(0) probably_damaging(0.951) TCGA-14-0789-01 7 71252851 71252851 C T CALN1 Missense_Mutation p.R232Q 0.20 deleterious(0) probably_damaging(0.986) TCGA-14-0789-01 7 86415655 86415655 C T GRM3 Missense_Mutation p.R183C 0.24 deleterious(0) probably_damaging(1) TCGA-14-0789-01 7 87092144 87092144 G T ABCB4 Silent p.P72P 0.18 TCGA-14-0789-01 7 99569626 99569626 C T AZGP1 Missense_Mutation p.R27H 0.20 tolerated(0.15) benign(0) TCGA-14-0789-01 9 127566377 127566377 C T OLFML2A Silent p.N308N 0.26 TCGA-14-0789-01 9 136507481 136507481 C T DBH Silent p.T213T 0.25 TCGA-14-0789-01 9 75567900 75567900 G A ALDH1A1 Missense_Mutation p.T6M 0.24 tolerated_low_confidence(0.46) benign(0.001) TCGA-14-0789-01 X 122748018 122748020 GGA - THOC2 In_Frame_Del p.P1446del 0.53 TCGA-14-0789-01 X 123176470 123176471 - A STAG2 Frame_Shift_Ins p.M148Nfs*3 0.32 TCGA-14-0789-01 X 12904281 12904281 C T TLR7 Silent p.A218A 0.44 TCGA-14-0789-01 X 15840971 15840971 G A ZRSR2 Missense_Mutation p.R352Q 0.48 tolerated(0.15) possibly_damaging(0.556) TCGA-14-0789-01 X 84634327 84634327 T G POF1B Missense_Mutation p.K45Q 0.46 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-14-0790-01 10 101981868 101981868 C T CHUK Splice_Site p.X129_splice 0.75 TCGA-14-0790-01 10 63957757 63957757 G T RTKN2 Silent p.T580T 0.82 TCGA-14-0790-01 11 1213377 1213377 G A MUC5AC RNA 0.14 TCGA-14-0790-01 11 27390538 27390538 C T LGR4 Missense_Mutation p.G578S 0.38 deleterious(0.02) possibly_damaging(0.764) TCGA-14-0790-01 11 46637480 46637480 C T HARBI1 Missense_Mutation p.C103Y 0.43 tolerated(0.09) probably_damaging(0.997) TCGA-14-0790-01 12 100453163 100453163 T C UHRF1BP1L Missense_Mutation p.K631R 0.10 tolerated(0.15) possibly_damaging(0.901) TCGA-14-0790-01 12 123794339 123794339 C T SBNO1 Silent p.A1120A 0.40 TCGA-14-0790-01 12 53185580 53185580 C T KRT3 Silent p.T403T 0.35 TCGA-14-0790-01 12 55945614 55945614 G A OR6C4 Missense_Mutation p.V202I 0.27 tolerated_low_confidence(0.3) benign(0.007) TCGA-14-0790-01 12 6091103 6091103 C T VWF Missense_Mutation p.R2379H 0.32 deleterious(0) possibly_damaging(0.84) TCGA-14-0790-01 12 75874782 75874782 A G GLIPR1 Missense_Mutation p.H41R 0.32 deleterious(0) probably_damaging(0.995) TCGA-14-0790-01 13 103343256 103343256 G A METTL21C Silent p.Y63Y 0.46 TCGA-14-0790-01 13 49865831 49865831 A C CDADC1 Silent p.R495R 0.40 TCGA-14-0790-01 14 105408457 105408457 C T AHNAK2 Missense_Mutation p.R4444Q 0.50 benign(0.074) TCGA-14-0790-01 14 20295720 20295720 T C OR4N2 Missense_Mutation p.I38T 0.02 tolerated(0.86) possibly_damaging(0.611) TCGA-14-0790-01 14 21052495 21052495 G T RNASE11 Missense_Mutation p.Q47K 0.41 deleterious(0.03) benign(0.086) TCGA-14-0790-01 14 58831848 58831848 A G ARID4A Missense_Mutation p.D1014G 0.39 deleterious(0) possibly_damaging(0.697) TCGA-14-0790-01 14 88651849 88651849 C T KCNK10 3'UTR 0.42 TCGA-14-0790-01 15 40583002 40583002 G C PLCB2 Missense_Mutation p.Q1025E 0.44 deleterious(0.02) possibly_damaging(0.559) TCGA-14-0790-01 15 42457929 42457929 G A VPS39 Missense_Mutation p.A589V 0.47 tolerated(1) benign(0.001) TCGA-14-0790-01 15 50518260 50518260 G A SLC27A2 Missense_Mutation p.V415I 0.46 tolerated(1) benign(0.005) TCGA-14-0790-01 15 89395102 89395102 G A ACAN Missense_Mutation p.V702M 0.41 deleterious(0.04) unknown(0) TCGA-14-0790-01 16 27373745 27373745 G A IL4R Missense_Mutation p.V358M 0.52 deleterious(0.02) probably_damaging(0.954) TCGA-14-0790-01 16 34712300 34712300 C T RP11-80F22.9 RNA 0.38 TCGA-14-0790-01 16 89782935 89782935 G C VPS9D1 Silent p.L122L 0.44 TCGA-14-0790-01 16 9858195 9858195 G A GRIN2A Missense_Mutation p.T1069M 0.45 tolerated_low_confidence(0.07) possibly_damaging(0.718) TCGA-14-0790-01 17 10369590 10369590 G A MYH4 Silent p.Y116Y 0.43 TCGA-14-0790-01 17 1577046 1577046 A G PRPF8 Missense_Mutation p.V1147A 0.40 deleterious(0.02) probably_damaging(0.998) TCGA-14-0790-01 17 31351022 31351022 C T ASIC2 Silent p.A402A 0.41 TCGA-14-0790-01 17 42225478 42225478 C T C17orf53 Missense_Mutation p.P103S 0.39 tolerated(0.07) probably_damaging(1) TCGA-14-0790-01 17 8658859 8658859 C T SPDYE4 Missense_Mutation p.R155H 0.46 deleterious(0) benign(0.2) TCGA-14-0790-01 18 77513692 77513692 G A CTDP1 Missense_Mutation p.E930K 0.46 tolerated(0.09) possibly_damaging(0.642) TCGA-14-0790-01 19 19351446 19351446 C T NCAN Silent p.N1148N 0.05 TCGA-14-0790-01 19 36018652 36018652 C T SBSN Missense_Mutation p.A178T 0.28 tolerated(0.1) probably_damaging(0.994) TCGA-14-0790-01 19 3783948 3783948 G T MATK Missense_Mutation p.S150Y 0.21 deleterious(0) probably_damaging(1) TCGA-14-0790-01 19 47824147 47824147 C T C5AR1 3'UTR 0.16 TCGA-14-0790-01 19 50882422 50882423 - G NR1H2 Frame_Shift_Ins p.A305Gfs*64 0.29 TCGA-14-0790-01 19 55284915 55284915 C T KIR2DL1 Silent p.N67N 0.34 TCGA-14-0790-01 19 58565272 58565272 C T ZSCAN1 Silent p.S360S 0.37 TCGA-14-0790-01 1 101705315 101705317 ATT - S1PR1 In_Frame_Del p.I260del 0.55 TCGA-14-0790-01 1 117078713 117078713 G A CD58 Missense_Mutation p.R168C 0.44 tolerated(0.06) benign(0.398) TCGA-14-0790-01 1 118623774 118623774 A T SPAG17 Missense_Mutation p.L720Q 0.44 tolerated(0.18) possibly_damaging(0.812) TCGA-14-0790-01 1 118628591 118628591 A C SPAG17 Silent p.T572T 0.44 TCGA-14-0790-01 1 158655079 158655079 C T SPTA1 Missense_Mutation p.R28H 0.39 deleterious(0) probably_damaging(0.997) TCGA-14-0790-01 1 16946430 16946430 C T RP5-1182A14.5 3'Flank 0.32 TCGA-14-0790-01 1 226127121 226127121 G A LEFTY2 Missense_Mutation p.A226V 0.59 tolerated(0.08) benign(0.081) TCGA-14-0790-01 1 93300358 93300358 G A RPL5 Missense_Mutation p.G71E 0.13 deleterious(0.01) probably_damaging(0.976) TCGA-14-0790-01 1 94032953 94032953 C T BCAR3 Missense_Mutation p.D728N 0.44 deleterious(0) probably_damaging(0.999) TCGA-14-0790-01 22 25627599 25627599 C T CRYBB2 Missense_Mutation p.R160C 0.35 deleterious(0.01) benign(0.384) TCGA-14-0790-01 2 103068411 103068411 C T IL18RAP Missense_Mutation p.P524S 0.13 deleterious(0) probably_damaging(0.999) TCGA-14-0790-01 2 109292448 109292448 C T LIMS1 Silent p.R265R 0.58 TCGA-14-0790-01 2 113333451 113333451 C T POLR1B 3'UTR 0.54 TCGA-14-0790-01 2 116447456 116447456 G A DPP10 Missense_Mutation p.V183I 0.48 tolerated(0.19) benign(0.012) TCGA-14-0790-01 2 8943255 8943255 A G KIDINS220 Silent p.N202N 0.51 TCGA-14-0790-01 3 123376130 123376130 C T MYLK Silent p.T1377T 0.48 TCGA-14-0790-01 3 180694117 180694117 A C FXR1 3'UTR 0.41 TCGA-14-0790-01 3 180694118 180694118 C A FXR1 3'UTR 0.40 TCGA-14-0790-01 3 186917604 186917604 C T RTP1 Missense_Mutation p.R180C 0.44 deleterious(0.03) possibly_damaging(0.832) TCGA-14-0790-01 3 42916850 42916850 C T CYP8B1 Silent p.T153T 0.41 TCGA-14-0790-01 4 188924752 188924752 C T ZFP42 Missense_Mutation p.T264M 0.44 deleterious(0) probably_damaging(0.999) TCGA-14-0790-01 4 84223384 84223384 C T HPSE Missense_Mutation p.G415D 0.52 deleterious(0) probably_damaging(0.999) TCGA-14-0790-01 5 123984804 123984804 C A ZNF608 Missense_Mutation p.D425Y 0.48 deleterious(0) probably_damaging(0.999) TCGA-14-0790-01 5 147781654 147781654 G A FBXO38 Silent p.E124E 0.46 TCGA-14-0790-01 5 422883 422883 G A AHRR Missense_Mutation p.V165M 0.56 deleterious(0) probably_damaging(0.998) TCGA-14-0790-01 5 67576379 67576379 A T PIK3R1 Missense_Mutation p.I220F 0.43 deleterious(0.02) benign(0.164) TCGA-14-0790-01 6 146755476 146755476 C A GRM1 Silent p.T1043T 0.42 TCGA-14-0790-01 6 155566797 155566797 C T TIAM2 Missense_Mutation p.A1195V 0.34 deleterious(0) benign(0.359) TCGA-14-0790-01 6 97344693 97344693 C T NDUFAF4 Missense_Mutation p.R56H 0.03 deleterious(0.03) benign(0.056) TCGA-14-0790-01 7 100319586 100319586 C T EPO Missense_Mutation p.T54M 0.23 tolerated(0.23) benign(0.002) TCGA-14-0790-01 7 102738903 102738903 T C ARMC10 Missense_Mutation p.L312S 0.11 deleterious(0) probably_damaging(0.993) TCGA-14-0790-01 7 117024875 117024875 C G ASZ1 Missense_Mutation p.V198L 0.46 deleterious(0.01) possibly_damaging(0.589) TCGA-14-0790-01 7 158902583 158902583 G A VIPR2 Missense_Mutation p.T60M 0.33 deleterious(0) probably_damaging(1) TCGA-14-0790-01 7 50097645 50097645 C T ZPBP Missense_Mutation p.E143K 0.29 tolerated(0.9) benign(0.016) TCGA-14-0790-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.94 deleterious(0.02) probably_damaging(0.974) TCGA-14-0790-01 9 116750724 116750724 C T ZNF618 Silent p.P67P 0.64 TCGA-14-0790-01 9 139282191 139282192 - A SNAPC4 Intron 0.35 TCGA-14-0790-01 9 140325755 140325755 G A NOXA1 Missense_Mutation p.G256S 0.06 tolerated(0.49) benign(0.008) TCGA-14-0790-01 X 11160414 11160414 G A ARHGAP6 Silent p.F732F 0.47 TCGA-14-0790-01 X 117520421 117520421 T C WDR44 Intron 0.46 TCGA-14-0790-01 X 129149265 129149265 G A BCORL1 Silent p.A839A 0.42 TCGA-14-0790-01 X 135485475 135485475 C A GPR112 Missense_Mutation p.T2883N 0.45 deleterious(0.02) benign(0.358) TCGA-14-0790-01 X 18348708 18348708 C T SCML2 Silent p.R30R 0.33 TCGA-14-0790-01 X 27765650 27765650 C A DCAF8L2 Missense_Mutation p.A213D 0.43 tolerated(0.63) benign(0.021) TCGA-14-0790-01 X 37028542 37028542 G A FAM47C Missense_Mutation p.V687I 0.44 deleterious(0.04) possibly_damaging(0.891) TCGA-14-0790-01 X 8433407 8433407 G A VCX3B 5'UTR 0.18 TCGA-14-0813-01 10 102676871 102676871 C T FAM178A Silent p.Y243Y 0.56 TCGA-14-0813-01 10 105108477 105108477 T C PCGF6 Missense_Mutation p.I185V 0.54 deleterious(0.03) benign(0.02) TCGA-14-0813-01 10 48413956 48413956 C T GDF2 Silent p.T304T 0.63 TCGA-14-0813-01 10 52566580 52566580 G T A1CF Missense_Mutation p.T565N 0.10 tolerated_low_confidence(0.08) possibly_damaging(0.637) TCGA-14-0813-01 10 89692883 89692883 C T PTEN Missense_Mutation p.H123Y 0.51 deleterious(0) probably_damaging(1) TCGA-14-0813-01 11 12183695 12183695 C T MICAL2 5'UTR 0.29 TCGA-14-0813-01 11 32954286 32954286 G A QSER1 Silent p.K365K 0.07 TCGA-14-0813-01 11 56431526 56431526 G A OR5AR1 Missense_Mutation p.R122H 0.39 deleterious(0.01) probably_damaging(0.973) TCGA-14-0813-01 11 59807826 59807826 C T OOSP2 5'UTR 0.42 TCGA-14-0813-01 11 60183888 60183888 T A MS4A14 Missense_Mutation p.S516T 0.05 tolerated(0.5) benign(0.064) TCGA-14-0813-01 11 6129052 6129052 T A OR56B4 Missense_Mutation p.I15N 0.32 deleterious(0.01) benign(0.013) TCGA-14-0813-01 11 62285625 62285625 C T AHNAK Missense_Mutation p.V5422I 0.27 benign(0.022) TCGA-14-0813-01 12 113730818 113730818 G C TPCN1 Silent p.R803R 0.31 TCGA-14-0813-01 12 49483743 49483743 G A DHH Missense_Mutation p.H364Y 0.47 tolerated(0.5) benign(0.02) TCGA-14-0813-01 12 52312886 52312886 T G ACVRL1 Missense_Mutation p.L455R 0.27 deleterious(0) probably_damaging(0.999) TCGA-14-0813-01 12 52312887 52312887 G T ACVRL1 Silent p.L455L 0.27 TCGA-14-0813-01 13 43935415 43935415 T C ENOX1 Missense_Mutation p.N128D 0.07 deleterious(0.05) benign(0.394) TCGA-14-0813-01 14 104583840 104583840 C T ASPG 3'Flank 0.55 TCGA-14-0813-01 14 30068325 30068325 C T PRKD1 Missense_Mutation p.V692M 0.27 tolerated(0.12) possibly_damaging(0.657) TCGA-14-0813-01 15 23811197 23811197 C T MKRN3 Nonsense_Mutation p.R90* 0.40 TCGA-14-0813-01 15 48744871 48744871 C A FBN1 Missense_Mutation p.E1811D 0.31 probably_damaging(0.997) TCGA-14-0813-01 15 62292774 62292774 C A VPS13C Missense_Mutation p.A448S 0.17 deleterious(0) probably_damaging(0.977) TCGA-14-0813-01 15 63058560 63058560 G A TLN2 Missense_Mutation p.G1712E 0.26 tolerated(0.31) benign(0.01) TCGA-14-0813-01 15 84245409 84245409 C T SH3GL3 Silent p.D180D 0.25 TCGA-14-0813-01 15 93563361 93563361 G A CHD2 Missense_Mutation p.G1676R 0.20 deleterious_low_confidence(0.05) benign(0.035) TCGA-14-0813-01 16 27363945 27363945 C T IL4R Missense_Mutation p.R200W 0.50 deleterious(0.02) probably_damaging(0.982) TCGA-14-0813-01 16 81954828 81954828 A C PLCG2 Missense_Mutation p.D754A 0.49 tolerated(0.26) benign(0.219) TCGA-14-0813-01 17 15517208 15517208 C T RP11-385D13.1 Silent p.G580G 0.43 TCGA-14-0813-01 17 17494952 17494952 C T PEMT 5'UTR 0.33 TCGA-14-0813-01 17 3144469 3144469 C A OR1D4 RNA 0.61 TCGA-14-0813-01 17 45734349 45734349 A - KPNB1 Frame_Shift_Del p.N136Mfs*11 0.30 TCGA-14-0813-01 17 47123715 47123715 G A IGF2BP1 Missense_Mutation p.G541R 0.37 deleterious(0) probably_damaging(0.999) TCGA-14-0813-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.36 deleterious(0) probably_damaging(0.997) TCGA-14-0813-01 17 7578211 7578214 CGAA - TP53 Frame_Shift_Del p.F212Yfs*34 0.23 TCGA-14-0813-01 18 20573449 20573449 C G RBBP8 Silent p.P553P 0.34 TCGA-14-0813-01 18 23738210 23738210 T A PSMA8 Splice_Site p.X165_splice 0.36 TCGA-14-0813-01 18 61323223 61323223 C T SERPINB3 Missense_Mutation p.D281N 0.25 tolerated(0.51) benign(0.026) TCGA-14-0813-01 19 13041262 13041262 C T FARSA Missense_Mutation p.G122E 0.25 tolerated(0.12) benign(0.227) TCGA-14-0813-01 19 23927229 23927229 A C ZNF681 Missense_Mutation p.F375V 0.32 deleterious(0) possibly_damaging(0.877) TCGA-14-0813-01 19 37905163 37905163 T C ZNF569 Missense_Mutation p.R133G 0.45 tolerated(0.53) benign(0) TCGA-14-0813-01 19 40903183 40903183 C T PRX Missense_Mutation p.R359H 0.36 tolerated(0.07) benign(0.068) TCGA-14-0813-01 19 51960834 51960834 C T SIGLEC8 Missense_Mutation p.R205H 0.39 tolerated(0.56) benign(0.001) TCGA-14-0813-01 19 55451643 55451643 C T NLRP7 Missense_Mutation p.V182M 0.34 deleterious(0.01) possibly_damaging(0.727) TCGA-14-0813-01 19 57641754 57641754 T A USP29 Missense_Mutation p.S571T 0.26 tolerated(0.06) probably_damaging(0.998) TCGA-14-0813-01 1 11107017 11107017 G A MASP2 Silent p.Y55Y 0.47 TCGA-14-0813-01 1 156816384 156816384 C T INSRR Silent p.T579T 0.21 TCGA-14-0813-01 1 158576316 158576316 T C OR10Z1 Silent p.L30L 0.04 TCGA-14-0813-01 1 160723081 160723081 C T SLAMF7 3'UTR 0.32 TCGA-14-0813-01 1 170511696 170511696 C T GORAB Missense_Mutation p.R187C 0.30 deleterious(0.01) probably_damaging(0.983) TCGA-14-0813-01 1 176526282 176526282 G A PAPPA2 Missense_Mutation p.R275H 0.15 tolerated(0.07) benign(0.235) TCGA-14-0813-01 1 186062774 186062774 G A HMCN1 Missense_Mutation p.R3390Q 0.25 probably_damaging(0.993) TCGA-14-0813-01 1 206224826 206224826 C T AVPR1B Missense_Mutation p.T129M 0.47 deleterious(0) probably_damaging(1) TCGA-14-0813-01 1 207500170 207500170 C T CD55 Missense_Mutation p.P218S 0.48 deleterious(0) probably_damaging(0.999) TCGA-14-0813-01 1 228487117 228487117 C T OBSCN Silent p.D4456D 0.23 TCGA-14-0813-01 1 232581433 232581433 C T SIPA1L2 Silent p.T1065T 0.53 TCGA-14-0813-01 1 24172183 24172183 C G FUCA1 3'UTR 0.38 TCGA-14-0813-01 1 248262881 248262881 G T OR2L13 Missense_Mutation p.M68I 0.30 tolerated(0.36) benign(0.018) TCGA-14-0813-01 1 248525679 248525679 G A OR2T4 Missense_Mutation p.R266Q 0.26 tolerated(0.12) benign(0.055) TCGA-14-0813-01 1 33745906 33745906 G C ZNF362 Missense_Mutation p.K177N 0.29 tolerated(0.22) benign(0.019) TCGA-14-0813-01 1 44595485 44595485 G A KLF17 Missense_Mutation p.G181D 0.38 tolerated(0.55) benign(0.14) TCGA-14-0813-01 1 70489054 70489054 A T LRRC7 Missense_Mutation p.R559S 0.35 tolerated(0.6) benign(0.004) TCGA-14-0813-01 1 72400892 72400892 A C NEGR1 Missense_Mutation p.I93M 0.32 deleterious(0.03) probably_damaging(0.968) TCGA-14-0813-01 20 1600544 1600544 A G SIRPB1 Missense_Mutation p.L16P 0.06 deleterious(0.01) probably_damaging(0.949) TCGA-14-0813-01 20 25457045 25457045 G A NINL Missense_Mutation p.P961L 0.28 tolerated(0.72) benign(0.001) TCGA-14-0813-01 20 33866943 33866943 G A EIF6 3'UTR 0.23 TCGA-14-0813-01 20 37547256 37547256 G A PPP1R16B Missense_Mutation p.A551T 0.39 deleterious(0) possibly_damaging(0.49) TCGA-14-0813-01 20 55777537 55777537 G A BMP7 Silent p.L252L 0.50 TCGA-14-0813-01 20 61039740 61039740 C A GATA5 3'UTR 0.07 TCGA-14-0813-01 22 22712423 22712423 T C IGLV1-47 Missense_Mutation p.Y56H 0.05 deleterious_low_confidence(0) possibly_damaging(0.593) TCGA-14-0813-01 22 36885966 36885966 G A FOXRED2 3'UTR 0.50 TCGA-14-0813-01 22 36983511 36983511 C T CACNG2 Splice_Site p.X99_splice 0.33 TCGA-14-0813-01 22 44967345 44967345 C T LINC00207 RNA 0.31 TCGA-14-0813-01 2 101967244 101967244 C T CREG2 3'UTR 0.40 TCGA-14-0813-01 2 102984390 102984390 G T IL18R1 Missense_Mutation p.S55I 0.40 deleterious(0.02) benign(0.06) TCGA-14-0813-01 2 112560057 112560057 G T ANAPC1 Missense_Mutation p.P1390H 0.33 deleterious(0) probably_damaging(0.998) TCGA-14-0813-01 2 15417158 15417158 G T NBAS Missense_Mutation p.P1736T 0.28 deleterious(0.01) probably_damaging(0.992) TCGA-14-0813-01 2 167263066 167263066 C T SCN7A Missense_Mutation p.R1358H 0.38 deleterious(0.02) benign(0.212) TCGA-14-0813-01 2 173338970 173338970 G A ITGA6 Silent p.A321A 0.36 TCGA-14-0813-01 2 179528769 179528769 T G TTN Missense_Mutation p.K12113Q 0.09 TCGA-14-0813-01 2 233246043 233246043 C T ALPP Silent p.D425D 0.08 TCGA-14-0813-01 2 240969715 240969715 G T OR6B2 Silent p.A44A 0.20 TCGA-14-0813-01 2 25965918 25965918 C T ASXL2 Silent p.Q1096Q 0.29 TCGA-14-0813-01 2 75276459 75276459 G T TACR1 3'UTR 0.43 TCGA-14-0813-01 3 121206922 121206922 T G POLQ Missense_Mutation p.K1619T 0.38 tolerated(0.06) benign(0.017) TCGA-14-0813-01 3 129137225 129137225 G A EFCAB12 Missense_Mutation p.P185S 0.35 tolerated(1) benign(0.007) TCGA-14-0813-01 3 138762733 138762733 G A PRR23C Missense_Mutation p.R244C 0.31 deleterious(0.03) benign(0.013) TCGA-14-0813-01 3 182897228 182897228 C T MCF2L2 Silent p.G1095G 0.24 TCGA-14-0813-01 3 424158 424158 G T CHL1 Missense_Mutation p.E660D 0.26 deleterious(0.03) benign(0.067) TCGA-14-0813-01 4 103184237 103184237 G A SLC39A8 Silent p.L449L 0.22 TCGA-14-0813-01 4 106158045 106158045 G C TET2 Missense_Mutation p.K982N 0.05 deleterious(0.01) probably_damaging(1) TCGA-14-0813-01 4 110880565 110880565 C A EGF Silent p.A346A 0.30 TCGA-14-0813-01 4 129028557 129028557 G C LARP1B Intron 0.30 TCGA-14-0813-01 4 141578365 141578365 C T TBC1D9 Silent p.V741V 0.39 TCGA-14-0813-01 4 188923884 188923884 C A ZFP42 5'UTR 0.36 TCGA-14-0813-01 4 30724196 30724196 G T PCDH7 Silent p.T384T 0.35 TCGA-14-0813-01 4 48852092 48852092 C T OCIAD1 Missense_Mutation p.P124S 0.07 tolerated(0.93) benign(0.024) TCGA-14-0813-01 4 71847741 71847741 A G MOB1B Silent p.E211E 0.38 TCGA-14-0813-01 4 9784506 9784506 C T DRD5 Missense_Mutation p.R285C 0.32 deleterious(0) probably_damaging(0.954) TCGA-14-0813-01 5 140517019 140517019 C T PCDHB5 Missense_Mutation p.P668L 0.34 deleterious_low_confidence(0.01) benign(0.199) TCGA-14-0813-01 5 175717198 175717198 G A SIMC1 Intron 0.40 TCGA-14-0813-01 5 176311062 176311062 C T HK3 Missense_Mutation p.R644Q 0.31 tolerated(0.08) possibly_damaging(0.832) TCGA-14-0813-01 6 100838922 100838922 G C SIM1 Missense_Mutation p.P539R 0.28 deleterious_low_confidence(0.05) possibly_damaging(0.773) TCGA-14-0813-01 6 100911433 100911433 G T SIM1 5'UTR 0.31 TCGA-14-0813-01 6 106968654 106968654 C T AIM1 Missense_Mutation p.R783C 0.34 deleterious(0.01) benign(0.024) TCGA-14-0813-01 6 109993127 109993127 T - AK9 Frame_Shift_Del p.H109Pfs*17 0.28 TCGA-14-0813-01 6 117203548 117203548 C - RFX6 Frame_Shift_Del p.L176Sfs*2 0.25 TCGA-14-0813-01 6 28971809 28971809 A T ZNF311 5'UTR 0.41 TCGA-14-0813-01 6 35480607 35480607 T C TULP1 Missense_Mutation p.E10G 0.07 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-14-0813-01 6 44255398 44255398 C T TCTE1 Silent p.R55R 0.35 TCGA-14-0813-01 6 47846160 47846160 A G PTCHD4 Missense_Mutation p.L807P 0.32 deleterious(0) probably_damaging(0.996) TCGA-14-0813-01 6 53986287 53986287 T A MLIP Missense_Mutation p.F36I 0.04 deleterious(0) probably_damaging(0.985) TCGA-14-0813-01 6 70411373 70411373 T A LMBRD1 Missense_Mutation p.S349C 0.25 deleterious(0.02) benign(0.235) TCGA-14-0813-01 6 7585169 7585169 T A DSP Silent p.A2558A 0.06 TCGA-14-0813-01 7 107706294 107706294 G A LAMB4 Missense_Mutation p.P917S 0.08 deleterious(0) probably_damaging(0.993) TCGA-14-0813-01 7 116398608 116398608 C A MET Missense_Mutation p.T733K 0.24 deleterious(0.01) benign(0.197) TCGA-14-0813-01 7 116918087 116918087 G A WNT2 3'UTR 0.20 TCGA-14-0813-01 7 142149156 142149156 T A TRBV5-5 Missense_Mutation p.T39S 0.19 deleterious(0.04) benign(0.201) TCGA-14-0813-01 7 27204781 27204781 G A HOXA9 Missense_Mutation p.A99V 0.24 tolerated(0.12) benign(0.043) TCGA-14-0813-01 7 62752064 62752064 C A ZNF733P RNA 0.18 TCGA-14-0813-01 8 16021738 16021738 C T MSR1 Missense_Mutation p.R218H 0.46 tolerated(0.45) benign(0.005) TCGA-14-0813-01 8 21560485 21560485 G A GFRA2 Silent p.N350N 0.54 TCGA-14-0813-01 8 24771257 24771257 G A NEFM 5'UTR 0.29 TCGA-14-0813-01 8 28210755 28210755 C T ZNF395 Missense_Mutation p.D252N 0.41 deleterious(0) probably_damaging(0.999) TCGA-14-0813-01 9 113445003 113445003 A T MUSK Missense_Mutation p.E43D 0.06 tolerated_low_confidence(0.32) benign(0.01) TCGA-14-0813-01 9 14155894 14155894 T A NFIB Splice_Site p.X206_splice 0.70 TCGA-14-0813-01 9 18777209 18777209 C G ADAMTSL1 Silent p.T994T 0.62 TCGA-14-0813-01 9 74485080 74485080 A G ABHD17B Missense_Mutation p.I189T 0.37 deleterious(0) benign(0.192) TCGA-14-0813-01 9 75406910 75406910 C T TMC1 Missense_Mutation p.R445C 0.34 deleterious(0) possibly_damaging(0.88) TCGA-14-0813-01 X 107827754 107827754 T C COL4A5 Missense_Mutation p.L344P 0.08 unknown(0) TCGA-14-0813-01 X 123181311 123181311 C T STAG2 Nonsense_Mutation p.R259* 0.78 TCGA-14-0813-01 X 147743983 147743983 C T AFF2 Silent p.A245A 0.14 TCGA-14-0813-01 X 151900520 151900520 C A MAGEA12 Missense_Mutation p.G94V 0.73 tolerated(0.09) benign(0.196) TCGA-14-0813-01 X 153184317 153184317 C T ARHGAP4 Missense_Mutation p.R374H 0.62 deleterious(0) benign(0.066) TCGA-14-0817-01 10 127677132 127677132 G A FANK1 Silent p.T68T 0.06 TCGA-14-0817-01 10 98741767 98741767 G A C10orf12 Missense_Mutation p.R207H 0.66 deleterious(0) probably_damaging(0.996) TCGA-14-0817-01 11 11374589 11374589 G C CSNK2A3 Nonsense_Mutation p.Y26* 0.03 TCGA-14-0817-01 11 2181082 2181082 C T INS Silent p.%3D 0.19 TCGA-14-0817-01 11 26734241 26734241 G A SLC5A12 Nonsense_Mutation p.R118* 0.29 TCGA-14-0817-01 11 40135944 40135944 G T LRRC4C Missense_Mutation p.D633E 0.54 tolerated_low_confidence(1) benign(0.027) TCGA-14-0817-01 11 46404137 46404137 C T MDK Missense_Mutation p.A82V 0.42 deleterious(0.04) probably_damaging(0.998) TCGA-14-0817-01 11 56431699 56431699 G A OR5AR1 Missense_Mutation p.E180K 0.23 deleterious(0) possibly_damaging(0.887) TCGA-14-0817-01 11 56511283 56511283 A T OR9G4 Missense_Mutation p.I2N 0.16 deleterious_low_confidence(0.01) benign(0.004) TCGA-14-0817-01 11 59224665 59224665 G A OR4D6 Missense_Mutation p.V78I 0.53 deleterious(0.03) benign(0.352) TCGA-14-0817-01 11 73073628 73073628 G A ARHGEF17 Silent p.S1615S 0.40 TCGA-14-0817-01 12 100897268 100897268 G A NR1H4 Missense_Mutation p.A35T 0.36 tolerated_low_confidence(0.4) benign(0.002) TCGA-14-0817-01 12 114377904 114377904 G A RBM19 Missense_Mutation p.A600V 0.29 tolerated(0.92) benign(0.007) TCGA-14-0817-01 12 9346769 9346769 G A PZP Silent p.D386D 0.35 TCGA-14-0817-01 13 53029668 53029668 C T CKAP2 5'UTR 0.74 TCGA-14-0817-01 14 23600746 23600746 C T SLC7A8 Missense_Mutation p.R346Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-14-0817-01 14 65261276 65261276 C T SPTB Silent p.Q568Q 0.41 TCGA-14-0817-01 14 69702870 69702870 G T EXD2 Splice_Site p.X386_splice 0.48 TCGA-14-0817-01 15 42700426 42700426 G A CAPN3 Silent p.S606S 0.20 TCGA-14-0817-01 15 72954655 72954655 G A GOLGA6B Missense_Mutation p.A304T 0.44 tolerated(0.26) possibly_damaging(0.682) TCGA-14-0817-01 15 89391161 89391161 C T ACAN Missense_Mutation p.R542W 0.27 deleterious(0) unknown(0) TCGA-14-0817-01 17 10447064 10447064 G A MYH2 Silent p.N235N 0.79 TCGA-14-0817-01 17 7578264 7578268 GATAA - TP53 Frame_Shift_Del p.L194Pfs*13 0.87 TCGA-14-0817-01 18 29038467 29038467 C A DSG3 Silent p.I92I 0.37 TCGA-14-0817-01 18 5428401 5428401 G A EPB41L3 Missense_Mutation p.R326W 0.42 deleterious(0) probably_damaging(1) TCGA-14-0817-01 19 6990821 6990821 G A EMR4P RNA 0.38 TCGA-14-0817-01 1 109823399 109823399 C T PSRC1 Missense_Mutation p.V302I 0.39 deleterious_low_confidence(0.03) possibly_damaging(0.525) TCGA-14-0817-01 1 114682285 114682285 C T SYT6 Missense_Mutation p.R70H 0.42 tolerated(0.46) possibly_damaging(0.818) TCGA-14-0817-01 1 152282266 152282266 C T FLG Missense_Mutation p.R1699H 0.41 possibly_damaging(0.812) TCGA-14-0817-01 1 155264433 155264433 C T PKLR Missense_Mutation p.V269I 0.38 tolerated(0.55) benign(0) TCGA-14-0817-01 1 210977475 210977475 G A KCNH1 Missense_Mutation p.T499M 0.14 deleterious(0) probably_damaging(0.995) TCGA-14-0817-01 1 32084903 32084903 G A HCRTR1 Missense_Mutation p.R37H 0.29 tolerated(0.06) benign(0.001) TCGA-14-0817-01 1 3395016 3395016 G A ARHGEF16 Missense_Mutation p.A552T 0.32 deleterious(0.01) possibly_damaging(0.647) TCGA-14-0817-01 1 92224221 92224221 C T TGFBR3 Silent p.V111V 0.48 TCGA-14-0817-01 20 2820564 2820564 C A PCED1A 5'UTR 0.08 TCGA-14-0817-01 20 44417585 44417585 G A WFDC3 Nonsense_Mutation p.R66* 0.06 TCGA-14-0817-01 20 56191402 56191402 T G ZBP1 Missense_Mutation p.K53Q 0.34 tolerated(0.24) benign(0.132) TCGA-14-0817-01 21 43161460 43161460 G A RIPK4 Silent p.N631N 0.34 TCGA-14-0817-01 22 39497965 39497965 C T APOBEC3H Missense_Mutation p.P154L 0.40 deleterious(0.01) probably_damaging(0.997) TCGA-14-0817-01 22 42342475 42342475 A G CENPM Missense_Mutation p.L28P 0.24 tolerated(0.11) probably_damaging(0.988) TCGA-14-0817-01 2 130785925 130785925 T C FAR2P1 RNA 0.28 TCGA-14-0817-01 2 135621053 135621053 G T ACMSD Missense_Mutation p.G113V 0.05 deleterious(0) probably_damaging(0.999) TCGA-14-0817-01 2 167263066 167263066 C T SCN7A Missense_Mutation p.R1358H 0.28 deleterious(0.02) benign(0.212) TCGA-14-0817-01 2 179575562 179575562 G A TTN Missense_Mutation p.T9421M 0.43 TCGA-14-0817-01 2 198968641 198968641 G A PLCL1 Nonsense_Mutation p.W1029* 0.28 TCGA-14-0817-01 2 219028768 219028768 G A CXCR1 3'UTR 0.40 TCGA-14-0817-01 2 239039147 239039147 C T ESPNL Missense_Mutation p.R598C 0.45 tolerated(0.05) possibly_damaging(0.856) TCGA-14-0817-01 2 96795617 96795617 G A ASTL Missense_Mutation p.R274W 0.31 deleterious(0) probably_damaging(1) TCGA-14-0817-01 3 127682174 127682174 C T KBTBD12 Silent p.T545T 0.27 TCGA-14-0817-01 3 150459869 150459869 A G SIAH2 3'UTR 0.45 TCGA-14-0817-01 3 47619104 47619104 T C CSPG5 Missense_Mutation p.I138V 0.38 tolerated_low_confidence(0.71) benign(0) TCGA-14-0817-01 4 104068560 104068560 C A CENPE Missense_Mutation p.V1363F 0.34 benign(0.006) TCGA-14-0817-01 4 114302706 114302706 A G ANK2 3'UTR 0.55 TCGA-14-0817-01 4 153244185 153244185 G A FBXW7 Nonsense_Mutation p.R658* 0.37 TCGA-14-0817-01 4 164271738 164271738 G C NPY5R Missense_Mutation p.D105H 0.07 deleterious(0) probably_damaging(1) TCGA-14-0817-01 4 47938532 47938532 G T CNGA1 Missense_Mutation p.T729N 0.37 deleterious(0.05) possibly_damaging(0.838) TCGA-14-0817-01 5 482707 482707 C T SLC9A3 Missense_Mutation p.V438I 0.43 tolerated(0.12) probably_damaging(0.965) TCGA-14-0817-01 5 89954051 89954051 A G GPR98 Missense_Mutation p.N1570D 0.29 probably_damaging(0.973) TCGA-14-0817-01 6 146720758 146720758 C T GRM1 Silent p.G861G 0.19 TCGA-14-0817-01 6 152763368 152763368 G A SYNE1 Missense_Mutation p.R1284W 0.39 possibly_damaging(0.677) TCGA-14-0817-01 6 160662608 160662608 C T SLC22A2 Missense_Mutation p.V467I 0.49 deleterious(0.02) benign(0.292) TCGA-14-0817-01 6 17616339 17616339 G A NUP153 Missense_Mutation p.R1473C 0.41 deleterious(0) probably_damaging(1) TCGA-14-0817-01 6 33679470 33679470 C T UQCC2 5'UTR 0.54 TCGA-14-0817-01 6 44922308 44922308 C T SUPT3H Missense_Mutation p.C217Y 0.39 tolerated(0.06) benign(0.019) TCGA-14-0817-01 6 46761453 46761453 G A MEP1A Missense_Mutation p.A49T 0.38 deleterious(0.02) possibly_damaging(0.623) TCGA-14-0817-01 6 73951151 73951151 C T KHDC1 3'UTR 0.34 TCGA-14-0817-01 6 87725079 87725079 G A HTR1E Silent p.E9E 0.40 TCGA-14-0817-01 7 123302696 123302696 G A LMOD2 Missense_Mutation p.M352I 0.27 deleterious(0.03) benign(0.391) TCGA-14-0817-01 7 142622682 142622682 C T TRPV5 Missense_Mutation p.R355H 0.20 tolerated(0.43) benign(0.057) TCGA-14-0817-01 7 143792808 143792808 C T OR2A12 Missense_Mutation p.A203V 0.24 tolerated(1) benign(0.001) TCGA-14-0817-01 7 149502623 149502623 C - SSPO RNA 0.18 TCGA-14-0817-01 7 71488740 71488740 C A CALN1 Missense_Mutation p.D135Y 0.31 deleterious(0) benign(0.421) TCGA-14-0817-01 7 87148697 87148697 G A ABCB1 Missense_Mutation p.R958W 0.31 deleterious(0) benign(0.023) TCGA-14-0817-01 7 92120719 92120719 C A PEX1 Missense_Mutation p.C1102F 0.30 tolerated(0.31) benign(0.035) TCGA-14-0817-01 7 98254301 98254301 C T NPTX2 Silent p.Y237Y 0.24 TCGA-14-0817-01 8 10390524 10390524 C T PRSS55 Missense_Mutation p.A236V 0.04 tolerated(0.05) probably_damaging(0.936) TCGA-14-0817-01 8 22079191 22079191 G A PHYHIP Missense_Mutation p.A223V 0.34 deleterious(0) probably_damaging(0.939) TCGA-14-0817-01 8 70536309 70536309 G A SULF1 Missense_Mutation p.R576H 0.04 deleterious(0.03) benign(0.133) TCGA-14-0817-01 8 70744225 70744225 G A SLCO5A1 Silent p.N228N 0.48 TCGA-14-0817-01 9 34372688 34372688 G A KIAA1161 Missense_Mutation p.A51V 0.39 deleterious(0.01) possibly_damaging(0.817) TCGA-14-0817-01 9 35108015 35108015 C T FAM214B Missense_Mutation p.G86E 0.43 tolerated(0.17) probably_damaging(0.92) TCGA-14-0817-01 X 101409244 101409244 T - BEX5 5'UTR 0.21 TCGA-14-0817-01 X 120183085 120183085 G A GLUD2 Missense_Mutation p.R516H 0.46 deleterious(0.03) benign(0.012) TCGA-14-0817-01 X 129759413 129759413 T G ENOX2 Missense_Mutation p.T570P 0.37 tolerated(1) benign(0.006) TCGA-14-0817-01 X 144903994 144903997 ACAG - SLITRK2 Frame_Shift_Del p.T19Rfs*23 0.54 TCGA-14-0817-01 X 153137805 153137805 G A L1CAM Missense_Mutation p.R68C 0.35 deleterious(0) probably_damaging(0.996) TCGA-14-0817-01 X 22151701 22151701 A T PHEX Missense_Mutation p.E455V 0.37 tolerated(0.14) benign(0.082) TCGA-14-0862-01 11 125359436 125359436 T G FEZ1 Missense_Mutation p.K80Q 0.27 tolerated(0.24) possibly_damaging(0.856) TCGA-14-0862-01 12 108589646 108589646 C T WSCD2 Missense_Mutation p.R13C 0.31 deleterious(0.01) benign(0.139) TCGA-14-0862-01 12 110352296 110352296 G A TCHP Missense_Mutation p.R395Q 0.32 tolerated(0.05) benign(0.441) TCGA-14-0862-01 12 122825886 122825886 A T CLIP1 Missense_Mutation p.L622Q 0.38 tolerated(0.11) probably_damaging(0.997) TCGA-14-0862-01 12 6128780 6128780 G A VWF Silent p.H1268H 0.37 TCGA-14-0862-01 12 62954286 62954286 C T MON2 Missense_Mutation p.A1142V 0.21 deleterious(0.01) possibly_damaging(0.891) TCGA-14-0862-01 14 19378054 19378054 A C OR11H12 Missense_Mutation p.H154P 0.09 tolerated(0.14) benign(0.008) TCGA-14-0862-01 15 38228595 38228595 C T TMCO5A Missense_Mutation p.T24M 0.35 tolerated(0.67) benign(0) TCGA-14-0862-01 15 50788098 50788098 T C USP8 Silent p.F904F 0.28 TCGA-14-0862-01 16 21273454 21273454 C A CRYM Missense_Mutation p.W233C 0.28 deleterious(0) probably_damaging(0.998) TCGA-14-0862-01 16 4016798 4016798 C T ADCY9 Missense_Mutation p.A1014T 0.08 deleterious(0) possibly_damaging(0.672) TCGA-14-0862-01 17 36059152 36059152 A G HNF1B Missense_Mutation p.F528S 0.44 deleterious(0) possibly_damaging(0.846) TCGA-14-0862-01 17 76128876 76128876 G A TMC8 Silent p.Q152Q 0.25 TCGA-14-0862-01 17 9066306 9066306 A T NTN1 Nonsense_Mutation p.K399* 0.41 TCGA-14-0862-01 18 28712602 28712602 A T DSC1 Missense_Mutation p.C723S 0.27 tolerated(0.52) probably_damaging(0.909) TCGA-14-0862-01 19 15484623 15484623 A G AKAP8 Silent p.G115G 0.20 TCGA-14-0862-01 19 1827919 1827924 TCTGAG - REXO1 In_Frame_Del p.D288_S289del 0.32 TCGA-14-0862-01 19 22941396 22941396 C A ZNF99 Missense_Mutation p.A439S 0.28 tolerated(0.87) benign(0.441) TCGA-14-0862-01 19 40363235 40363235 C T FCGBP Silent p.V4945V 0.40 TCGA-14-0862-01 19 7593590 7593590 G A MCOLN1 Splice_Site p.X328_splice 0.24 TCGA-14-0862-01 19 9020077 9020077 C T MUC16 Missense_Mutation p.R12473K 0.28 possibly_damaging(0.465) TCGA-14-0862-01 19 9213273 9213273 A G OR7G2 Missense_Mutation p.L237S 0.33 deleterious(0) benign(0.046) TCGA-14-0862-01 1 152326384 152326384 T C FLG2 Missense_Mutation p.H1293R 0.36 benign(0.227) TCGA-14-0862-01 1 222717002 222717002 C T HHIPL2 Missense_Mutation p.R284H 0.38 tolerated(0.3) benign(0.025) TCGA-14-0862-01 20 33590841 33590841 G A TRPC4AP 3'UTR 0.28 TCGA-14-0862-01 20 49626630 49626630 G A KCNG1 Silent p.D82D 0.38 TCGA-14-0862-01 22 21349215 21349217 GAA - LZTR1 In_Frame_Del p.K615del 0.42 TCGA-14-0862-01 22 28193444 28193444 C T MN1 Missense_Mutation p.G1030S 0.50 benign(0.012) TCGA-14-0862-01 2 135738921 135738921 G T MAP3K19 Nonsense_Mutation p.C1130* 0.27 TCGA-14-0862-01 2 234237130 234237130 C T SAG Silent p.S173S 0.26 TCGA-14-0862-01 2 64323378 64323378 T C PELI1 Missense_Mutation p.M191V 0.37 deleterious(0.03) benign(0.073) TCGA-14-0862-01 2 69053291 69053291 G A ARHGAP25 Missense_Mutation p.V636I 0.26 tolerated(0.34) benign(0.012) TCGA-14-0862-01 3 108076824 108076824 C T HHLA2 Silent p.Y273Y 0.32 TCGA-14-0862-01 3 52780805 52780807 CTC - NEK4 In_Frame_Del p.R541del 0.46 TCGA-14-0862-01 3 53222823 53222823 G A PRKCD Silent p.G501G 0.37 TCGA-14-0862-01 4 147561831 147561831 G T POU4F2 Missense_Mutation p.Q367H 0.34 deleterious(0.04) possibly_damaging(0.632) TCGA-14-0862-01 4 154624496 154624496 C G TLR2 Missense_Mutation p.S146C 0.46 deleterious(0.01) probably_damaging(0.939) TCGA-14-0862-01 4 88973174 88973174 A G PKD2 Missense_Mutation p.Y527C 0.32 deleterious(0.02) benign(0.014) TCGA-14-0862-01 5 139060958 139060958 C T CXXC5 Nonsense_Mutation p.R284* 0.31 TCGA-14-0862-01 5 140590067 140590067 C T PCDHB12 Missense_Mutation p.R530C 0.37 deleterious_low_confidence(0.02) benign(0.077) TCGA-14-0862-01 5 140788951 140788951 T G PCDHGB6 Missense_Mutation p.I394M 0.42 deleterious(0.03) possibly_damaging(0.706) TCGA-14-0862-01 5 67589149 67589149 A T PIK3R1 Missense_Mutation p.K379N 0.18 deleterious(0) probably_damaging(1) TCGA-14-0862-01 5 68603775 68603775 T C CCDC125 Intron 0.41 TCGA-14-0862-01 6 129687471 129687471 C T LAMA2 Silent p.L1609L 0.25 TCGA-14-0862-01 6 55739290 55739290 C T BMP5 Missense_Mutation p.R125H 0.35 tolerated(0.08) benign(0.009) TCGA-14-0862-01 7 147914501 147914501 G A CNTNAP2 Silent p.P1044P 0.52 TCGA-14-0862-01 9 125424624 125424624 G A OR1L1 Silent p.P210P 0.36 TCGA-14-0862-01 X 10535512 10535512 C T MID1 Missense_Mutation p.A26T 0.60 deleterious(0.04) probably_damaging(1) TCGA-14-0862-01 X 114245386 114245386 T C IL13RA2 Missense_Mutation p.E176G 0.12 deleterious(0) possibly_damaging(0.739) TCGA-14-0862-01 X 125299277 125299277 C T DCAF12L2 Missense_Mutation p.G211S 0.72 deleterious(0) probably_damaging(1) TCGA-14-0862-01 X 131212955 131212955 G C FRMD7 Missense_Mutation p.Q364E 0.10 tolerated(0.23) benign(0.009) TCGA-14-0871-01 11 56431364 56431364 T G OR5AR1 Missense_Mutation p.F68C 0.33 deleterious(0) possibly_damaging(0.714) TCGA-14-0871-01 11 59376014 59376014 G A OSBP Silent p.I255I 0.27 TCGA-14-0871-01 11 66333870 66333870 G C CTSF Missense_Mutation p.R205G 0.41 tolerated(0.15) benign(0.138) TCGA-14-0871-01 12 125296422 125296422 C T SCARB1 Silent p.L240L 0.38 TCGA-14-0871-01 12 126138507 126138507 G T TMEM132B Nonsense_Mutation p.E830* 0.20 TCGA-14-0871-01 12 65460443 65460443 G T WIF1 Missense_Mutation p.F236L 0.21 tolerated(0.17) benign(0.292) TCGA-14-0871-01 12 72666917 72666917 C T TRHDE Missense_Mutation p.T120M 0.23 tolerated(0.07) benign(0.001) TCGA-14-0871-01 12 7970576 7970576 C A SLC2A14 Missense_Mutation p.A399S 0.56 tolerated(0.3) possibly_damaging(0.845) TCGA-14-0871-01 13 42893415 42893415 G A AKAP11 3'UTR 0.42 TCGA-14-0871-01 13 94680086 94680086 A G GPC6 Missense_Mutation p.N272S 0.96 deleterious(0.01) possibly_damaging(0.461) TCGA-14-0871-01 14 45620712 45620712 A T FANCM Missense_Mutation p.N344I 0.98 deleterious(0) benign(0.277) TCGA-14-0871-01 14 69349623 69349623 G A ACTN1 Silent p.I595I 0.14 TCGA-14-0871-01 14 95557629 95557629 T C DICER1 Missense_Mutation p.E1813G 0.95 deleterious(0) probably_damaging(1) TCGA-14-0871-01 15 69347743 69347743 T A NOX5 Missense_Mutation p.L690Q 0.12 deleterious(0) probably_damaging(0.982) TCGA-14-0871-01 15 91488293 91488293 A G UNC45A Missense_Mutation p.K400R 0.05 tolerated(0.6) benign(0.002) TCGA-14-0871-01 16 53528141 53528141 G A AKTIP Nonsense_Mutation p.Q207* 0.05 TCGA-14-0871-01 16 69973830 69973830 T C WWP2 Missense_Mutation p.F867S 0.96 deleterious(0) probably_damaging(0.999) TCGA-14-0871-01 17 29557336 29557336 C T NF1 Nonsense_Mutation p.Q1017* 0.94 TCGA-14-0871-01 17 34072639 34072639 C G GAS2L2 Missense_Mutation p.R626T 0.93 tolerated(0.26) benign(0.039) TCGA-14-0871-01 17 40817702 40817702 A G TUBG2 Missense_Mutation p.T234A 0.21 tolerated(0.09) benign(0.012) TCGA-14-0871-01 17 40939868 40939868 C A WNK4 Missense_Mutation p.P605H 0.27 deleterious(0.02) unknown(0) TCGA-14-0871-01 17 56051757 56051757 T C VEZF1 3'UTR 0.14 TCGA-14-0871-01 17 7577035 7577036 - G TP53 Frame_Shift_Ins p.G302Rfs*4 0.61 TCGA-14-0871-01 18 30873224 30873224 T A CCDC178 Missense_Mutation p.I359L 0.53 tolerated(0.16) benign(0.047) TCGA-14-0871-01 19 30476136 30476136 G A URI1 Silent p.K53K 0.29 TCGA-14-0871-01 19 33651345 33651345 T A WDR88 Missense_Mutation p.F341L 0.32 tolerated(0.09) benign(0.046) TCGA-14-0871-01 19 34292103 34292103 C T KCTD15 Missense_Mutation p.T33I 0.11 deleterious_low_confidence(0.01) possibly_damaging(0.71) TCGA-14-0871-01 19 57088457 57088457 A G ZNF470 Silent p.Q220Q 0.16 TCGA-14-0871-01 19 58983498 58983498 G A ZNF324 Missense_Mutation p.V547I 0.37 tolerated_low_confidence(0.25) benign(0.002) TCGA-14-0871-01 1 155885401 155885401 C T KIAA0907 Intron 0.58 TCGA-14-0871-01 1 158986412 158986412 C G IFI16 Silent p.A157A 0.13 TCGA-14-0871-01 1 200017711 200017711 G C NR5A2 Missense_Mutation p.S292T 0.44 tolerated(1) benign(0.001) TCGA-14-0871-01 1 24189688 24189688 C T FUCA1 Missense_Mutation p.G200S 0.61 tolerated(0.32) possibly_damaging(0.864) TCGA-14-0871-01 1 24189727 24189727 C T FUCA1 Missense_Mutation p.E187K 0.18 deleterious(0) probably_damaging(0.971) TCGA-14-0871-01 1 248637231 248637231 T C OR2T3 Missense_Mutation p.C194R 0.56 deleterious(0) probably_damaging(0.999) TCGA-14-0871-01 1 35658714 35658714 C G SFPQ 5'UTR 0.60 TCGA-14-0871-01 1 39340130 39340130 C T GJA9 3'UTR 0.70 TCGA-14-0871-01 1 46745257 46745257 C G LRRC41 Missense_Mutation p.E684Q 0.14 deleterious(0.01) possibly_damaging(0.607) TCGA-14-0871-01 1 94668041 94668041 A G ARHGAP29 Intron 0.08 TCGA-14-0871-01 21 46047750 46047750 C A KRTAP10-9 Missense_Mutation p.T221N 0.11 tolerated(0.11) possibly_damaging(0.728) TCGA-14-0871-01 2 103340253 103340253 G C MFSD9 Missense_Mutation p.I181M 0.18 deleterious(0) probably_damaging(0.986) TCGA-14-0871-01 2 164466661 164466661 C T FIGN Missense_Mutation p.G561R 0.18 tolerated(0.13) possibly_damaging(0.718) TCGA-14-0871-01 2 207827161 207827161 A T CPO Missense_Mutation p.Q200H 0.80 tolerated(0.14) benign(0.033) TCGA-14-0871-01 2 21247830 21247830 C T APOB Missense_Mutation p.R804H 0.13 benign(0.011) TCGA-14-0871-01 2 228881144 228881144 C T SPHKAP Missense_Mutation p.V1476M 0.04 tolerated(0.19) benign(0.004) TCGA-14-0871-01 2 50765702 50765702 T A NRXN1 Missense_Mutation p.D651V 0.75 deleterious(0) benign(0.439) TCGA-14-0871-01 2 69046427 69046427 T C ARHGAP25 Silent p.S392S 0.20 TCGA-14-0871-01 2 97400183 97400183 G C LMAN2L Silent p.G129G 0.07 TCGA-14-0871-01 3 113847759 113847759 C T DRD3 Missense_Mutation p.G336E 0.50 deleterious(0) probably_damaging(0.996) TCGA-14-0871-01 3 195969479 195969479 A C PCYT1A Nonsense_Mutation p.Y173* 0.18 TCGA-14-0871-01 3 88205314 88205314 G A C3orf38 Nonsense_Mutation p.W173* 0.64 TCGA-14-0871-01 4 114279919 114279919 T C ANK2 Missense_Mutation p.I3382T 0.04 benign(0.002) TCGA-14-0871-01 4 185631267 185631267 A G CENPU Silent p.N252N 0.40 TCGA-14-0871-01 5 10423856 10423857 - T MARCH6 Frame_Shift_Ins p.G766Wfs*25 0.11 TCGA-14-0871-01 5 176729179 176729179 T C RAB24 Missense_Mutation p.N145S 0.43 tolerated(0.36) benign(0.001) TCGA-14-0871-01 5 7875377 7875377 G A MTRR Missense_Mutation p.G124D 0.16 deleterious(0) probably_damaging(1) TCGA-14-0871-01 6 152779932 152779932 C G SYNE1 Missense_Mutation p.R843P 0.12 benign(0.001) TCGA-14-0871-01 6 43250498 43250498 G T TTBK1 Missense_Mutation p.G674C 0.33 probably_damaging(0.979) TCGA-14-0871-01 7 150390248 150390248 C T GIMAP2 Missense_Mutation p.H292Y 0.07 tolerated(1) benign(0) TCGA-14-0871-01 7 150440111 150440111 T A GIMAP5 Missense_Mutation p.L295H 0.30 deleterious(0.01) benign(0.184) TCGA-14-0871-01 8 6681094 6681094 T A XKR5 RNA 0.21 TCGA-14-0871-01 9 115336719 115336719 G T KIAA1958 Missense_Mutation p.C120F 0.05 deleterious(0) possibly_damaging(0.902) TCGA-14-0871-01 9 8389318 8389318 C T PTPRD Missense_Mutation p.E1434K 0.29 deleterious(0) probably_damaging(0.995) TCGA-14-0871-01 9 86924627 86924627 A T SLC28A3 Missense_Mutation p.D53E 0.24 tolerated(1) benign(0.001) TCGA-14-0871-01 X 106397360 106397360 G C NUP62CL Missense_Mutation p.A104G 0.20 deleterious(0) probably_damaging(0.982) TCGA-14-0871-01 X 142967486 142967486 A T UBE2NL Missense_Mutation p.K95M 0.95 deleterious(0) probably_damaging(0.934) TCGA-14-0871-01 X 142967487 142967487 G A UBE2NL Silent p.K95K 0.95 TCGA-14-0871-01 X 151808911 151808911 G A GABRQ Silent p.L74L 0.06 TCGA-14-1034-01 10 89692841 89692841 G A PTEN Missense_Mutation p.D109N 0.42 deleterious(0.02) possibly_damaging(0.463) TCGA-14-1034-01 11 111613292 111613292 T C PPP2R1B Missense_Mutation p.N551S 0.29 deleterious(0.01) possibly_damaging(0.46) TCGA-14-1034-01 11 193135 193135 C T SCGB1C1 Silent p.L12L 0.17 TCGA-14-1034-01 11 237014 237014 C T PSMD13 5'UTR 0.32 TCGA-14-1034-01 11 31086167 31086167 G T DCDC1 Missense_Mutation p.Q814K 0.33 tolerated_low_confidence(0.11) possibly_damaging(0.76) TCGA-14-1034-01 11 46792527 46792527 C T CKAP5 Silent p.L999L 0.32 TCGA-14-1034-01 11 89073317 89073317 G A NOX4 Missense_Mutation p.L454F 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-14-1034-01 12 4854615 4854615 G A GALNT8 Missense_Mutation p.R294Q 0.36 tolerated(0.13) probably_damaging(0.986) TCGA-14-1034-01 12 64509616 64509616 G A SRGAP1 Missense_Mutation p.G723S 0.26 deleterious(0.02) benign(0.296) TCGA-14-1034-01 12 7639557 7639557 C T CD163 Silent p.S692S 0.30 TCGA-14-1034-01 13 52516659 52516659 G A ATP7B Missense_Mutation p.T1092M 0.08 tolerated(0.12) benign(0.239) TCGA-14-1034-01 13 76381854 76381854 C T LMO7 Nonsense_Mutation p.R246* 0.54 TCGA-14-1034-01 13 86370546 86370546 G C SLITRK6 Missense_Mutation p.S33C 0.52 deleterious(0.01) possibly_damaging(0.56) TCGA-14-1034-01 14 105409667 105409667 C T AHNAK2 Missense_Mutation p.V4041M 0.29 benign(0.18) TCGA-14-1034-01 14 106780621 106780621 C T IGHV4-28 Silent p.P81P 0.27 TCGA-14-1034-01 14 62550997 62550997 G A SYT16 Silent p.A506A 0.33 TCGA-14-1034-01 16 10788509 10788509 C T TEKT5 Silent p.P74P 0.33 TCGA-14-1034-01 16 70941323 70941323 G A HYDIN Missense_Mutation p.T2823M 0.16 benign(0.051) TCGA-14-1034-01 16 70989428 70989428 C T HYDIN Missense_Mutation p.V2056M 0.28 benign(0.001) TCGA-14-1034-01 16 81953214 81953214 G A PLCG2 Missense_Mutation p.R727Q 0.24 deleterious(0) probably_damaging(0.982) TCGA-14-1034-01 16 84035467 84035467 G A NECAB2 Missense_Mutation p.V360I 0.36 tolerated(0.1) benign(0.131) TCGA-14-1034-01 16 84529371 84529371 C T TLDC1 Missense_Mutation p.G101E 0.27 deleterious(0) probably_damaging(0.962) TCGA-14-1034-01 17 18210245 18210246 TC - TOP3A Frame_Shift_Del p.E117Nfs*2 0.29 TCGA-14-1034-01 17 29685497 29685497 G - NF1 Splice_Site p.X2657_splice 0.34 TCGA-14-1034-01 17 36065013 36065013 G A HNF1B Missense_Mutation p.T417M 0.30 deleterious(0) probably_damaging(1) TCGA-14-1034-01 17 3628349 3628349 C T GSG2 Missense_Mutation p.P374S 0.32 tolerated(0.42) benign(0.006) TCGA-14-1034-01 17 39087633 39087633 G - KRT23 Frame_Shift_Del p.F157Lfs*26 0.28 TCGA-14-1034-01 17 56280591 56280591 G A EPX Missense_Mutation p.A620T 0.31 deleterious(0.02) possibly_damaging(0.552) TCGA-14-1034-01 17 7579374 7579374 C G TP53 Missense_Mutation p.G105R 0.43 deleterious(0) probably_damaging(1) TCGA-14-1034-01 18 42643234 42643234 C T SETBP1 Silent p.R1454R 0.44 TCGA-14-1034-01 18 55024414 55024414 C T ST8SIA3 Silent p.F191F 0.29 TCGA-14-1034-01 19 1032680 1032680 C T CNN2 Silent p.L125L 0.30 TCGA-14-1034-01 19 1080274 1080274 G A HMHA1 Missense_Mutation p.R591Q 0.25 tolerated(0.07) possibly_damaging(0.454) TCGA-14-1034-01 19 12222273 12222273 C T ZNF788 5'UTR 0.26 TCGA-14-1034-01 19 13084491 13084491 G C DAND5 3'UTR 0.32 TCGA-14-1034-01 19 14758015 14758015 G A EMR3 Missense_Mutation p.T287M 0.26 tolerated(0.06) benign(0.051) TCGA-14-1034-01 19 17951036 17951036 G A JAK3 Intron 0.31 TCGA-14-1034-01 19 22364158 22364158 C T ZNF676 Missense_Mutation p.V121I 0.23 tolerated(0.07) benign(0.001) TCGA-14-1034-01 19 3005947 3005947 C T TLE2 Missense_Mutation p.R507H 0.18 deleterious(0.01) probably_damaging(0.969) TCGA-14-1034-01 19 36351505 36351505 C T KIRREL2 Silent p.P288P 0.22 TCGA-14-1034-01 19 40541725 40541725 C G ZNF780B Missense_Mutation p.K347N 0.34 tolerated(0.58) benign(0.066) TCGA-14-1034-01 19 55449589 55449589 G A NLRP7 Missense_Mutation p.P651L 0.25 tolerated(0.2) benign(0.028) TCGA-14-1034-01 19 5587938 5587938 C T SAFB2 Missense_Mutation p.R860H 0.14 tolerated(0.07) possibly_damaging(0.84) TCGA-14-1034-01 1 110754401 110754403 TTC - KCNC4 In_Frame_Del p.F96del 0.43 TCGA-14-1034-01 1 154514539 154514539 G A TDRD10 Missense_Mutation p.A137T 0.37 tolerated(1) benign(0) TCGA-14-1034-01 1 154516509 154516509 G A TDRD10 Missense_Mutation p.V192I 0.30 tolerated(0.64) benign(0) TCGA-14-1034-01 1 201009210 201009210 C T CACNA1S Missense_Mutation p.A1791T 0.38 deleterious_low_confidence(0) benign(0.388) TCGA-14-1034-01 1 236590728 236590728 G A EDARADD Missense_Mutation p.R66Q 0.41 tolerated(0.28) benign(0) TCGA-14-1034-01 20 31022345 31022345 C T ASXL1 Silent p.G610G 0.35 TCGA-14-1034-01 21 46057496 46057496 G A KRTAP10-10 Silent p.Q54Q 0.55 TCGA-14-1034-01 21 46911174 46911174 C T COL18A1 Silent p.G881G 0.41 TCGA-14-1034-01 21 47538549 47538549 C T COL6A2 Missense_Mutation p.R380C 0.26 deleterious(0) probably_damaging(0.999) TCGA-14-1034-01 2 113950118 113950118 G A PSD4 Missense_Mutation p.R597H 0.23 tolerated(1) benign(0.001) TCGA-14-1034-01 2 179474032 179474032 G A TTN Silent p.R17335R 0.32 TCGA-14-1034-01 2 62450208 62450208 A G B3GNT2 Missense_Mutation p.K285E 0.29 tolerated(0.08) possibly_damaging(0.803) TCGA-14-1034-01 3 169579511 169579511 T C LRRC31 Missense_Mutation p.K89R 0.34 tolerated(0.16) benign(0.008) TCGA-14-1034-01 3 44488333 44488333 G C ZNF445 Missense_Mutation p.L944V 0.25 tolerated(0.21) benign(0.364) TCGA-14-1034-01 3 52417479 52417479 C T DNAH1 Silent p.D2673D 0.39 TCGA-14-1034-01 3 98072705 98072705 G T OR5K4 Missense_Mutation p.R3M 0.33 deleterious(0.03) benign(0.004) TCGA-14-1034-01 4 166963247 166963247 C T TLL1 Missense_Mutation p.R444C 0.35 deleterious(0.01) possibly_damaging(0.662) TCGA-14-1034-01 5 10290849 10290849 G A CMBL Missense_Mutation p.P9L 0.34 tolerated(0.16) possibly_damaging(0.621) TCGA-14-1034-01 5 135692836 135692836 G A TRPC7 Silent p.N80N 0.30 TCGA-14-1034-01 5 149212575 149212575 C T PPARGC1B Silent p.P313P 0.31 TCGA-14-1034-01 5 150901466 150901466 G A FAT2 Missense_Mutation p.T3563M 0.36 benign(0.063) TCGA-14-1034-01 5 23523456 23523456 C A PRDM9 Silent p.A313A 0.28 TCGA-14-1034-01 5 45262901 45262901 A G HCN1 Missense_Mutation p.S599P 0.30 deleterious(0) possibly_damaging(0.499) TCGA-14-1034-01 5 492029 492029 G A SLC9A3 Silent p.I123I 0.36 TCGA-14-1034-01 6 25727485 25727485 A G HIST1H2BA Missense_Mutation p.T117A 0.20 deleterious_low_confidence(0.02) probably_damaging(0.992) TCGA-14-1034-01 6 28539828 28539828 C T SCAND3 Missense_Mutation p.G1280R 0.40 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-14-1034-01 6 31749730 31749730 C T VARS Splice_Site p.X748_splice 0.05 TCGA-14-1034-01 6 6267040 6267040 G A F13A1 Missense_Mutation p.R108C 0.28 tolerated(0.07) possibly_damaging(0.892) TCGA-14-1034-01 6 88140868 88140868 C T C6ORF165 Missense_Mutation p.A426V 0.26 tolerated(0.31) benign(0.005) TCGA-14-1034-01 6 99930669 99930669 G A USP45 Missense_Mutation p.P269S 0.31 tolerated(0.08) possibly_damaging(0.562) TCGA-14-1034-01 7 126173853 126173853 G A GRM8 Missense_Mutation p.T528M 0.25 tolerated(1) benign(0.091) TCGA-14-1034-01 7 143175209 143175209 C T TAS2R41 Nonsense_Mutation p.R82* 0.29 TCGA-14-1034-01 7 149557807 149557807 G T ZNF862 Nonsense_Mutation p.E520* 0.22 TCGA-14-1034-01 7 21640705 21640705 G A DNAH11 Silent p.V1111V 0.29 TCGA-14-1034-01 7 23286464 23286464 G A GPNMB 5'UTR 0.30 TCGA-14-1034-01 7 32620473 32620473 G C AVL9 Missense_Mutation p.R601P 0.18 deleterious(0) probably_damaging(0.999) TCGA-14-1034-01 7 55210077 55210077 G A EGFR Missense_Mutation p.G63R 0.17 deleterious(0) probably_damaging(0.998) TCGA-14-1034-01 8 133880390 133880390 C T TG Missense_Mutation p.P33L 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-14-1034-01 8 145151572 145151572 T A CYC1 Missense_Mutation p.F233I 0.42 deleterious(0) probably_damaging(0.952) TCGA-14-1034-01 8 22020147 22020147 C T SFTPC Missense_Mutation p.R35C 0.39 tolerated(0.15) probably_damaging(0.999) TCGA-14-1034-01 8 24199174 24199174 G T ADAM28 Silent p.R578R 0.35 TCGA-14-1034-01 8 42023136 42023136 G A AP3M2 Intron 0.29 TCGA-14-1034-01 8 42841865 42841866 - A HOOK3 Frame_Shift_Ins p.I489Nfs*10 0.33 TCGA-14-1034-01 8 74722708 74722708 C A UBE2W Splice_Site p.X162_splice 0.13 TCGA-14-1034-01 8 74722709 74722709 C A UBE2W Missense_Mutation p.K162N 0.13 deleterious(0) probably_damaging(1) TCGA-14-1034-01 8 92407320 92407320 G A SLC26A7 3'Flank 0.06 TCGA-14-1034-01 9 126219637 126219637 G A DENND1A Silent p.G392G 0.35 TCGA-14-1034-01 9 43828110 43828110 G C CNTNAP3B Missense_Mutation p.V456L 0.60 tolerated(0.06) benign(0.246) TCGA-14-1034-01 9 72131360 72131360 G A APBA1 Missense_Mutation p.A256V 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.814) TCGA-14-1034-01 9 74299978 74299978 C T TMEM2 3'UTR 0.45 TCGA-14-1034-01 X 117959260 117959260 T G ZCCHC12 Missense_Mutation p.L18W 0.33 deleterious(0) benign(0.258) TCGA-14-1034-01 X 118250604 118250604 C A KIAA1210 Missense_Mutation p.A169S 0.32 tolerated(0.13) benign(0.008) TCGA-14-1034-01 X 132159393 132159393 C T USP26 3'UTR 0.19 TCGA-14-1034-01 X 135455198 135455198 C A GPR112 Missense_Mutation p.S2584Y 0.31 deleterious(0.02) benign(0.4) TCGA-14-1034-01 X 18845405 18845405 G A PPEF1 Missense_Mutation p.V588M 0.35 tolerated(0.95) benign(0.004) TCGA-14-1034-01 X 2840042 2840042 G C ARSD Missense_Mutation p.A73G 0.34 deleterious(0) probably_damaging(0.965) TCGA-14-1034-01 X 49093699 49093699 G A CCDC22 Missense_Mutation p.R66H 0.33 deleterious(0.02) possibly_damaging(0.672) TCGA-14-1034-01 X 49965624 49965624 T A AKAP4 5'UTR 0.22 TCGA-14-1034-01 X 78427086 78427086 T A GPR174 Missense_Mutation p.F194L 0.32 deleterious(0) probably_damaging(0.999) TCGA-14-1043-01 11 55761884 55761884 T G OR5F1 Missense_Mutation p.N73T 0.20 deleterious(0) benign(0) TCGA-14-1043-01 11 66613623 66613623 G A RCE1 3'UTR 0.34 TCGA-14-1043-01 12 107048021 107048021 T G RFX4 Nonsense_Mutation p.Y78* 0.23 TCGA-14-1043-01 15 75641495 75641495 C T NEIL1 Silent p.G83G 0.33 TCGA-14-1043-01 17 29560133 29560133 C - NF1 Frame_Shift_Del p.R1204Gfs*11 0.20 TCGA-14-1043-01 17 29661945 29661945 C T NF1 Nonsense_Mutation p.R1968* 0.28 TCGA-14-1043-01 17 3779538 3779538 G A CAMKK1 Silent p.S363S 0.30 TCGA-14-1043-01 17 46692020 46692020 C G HOXB8 Missense_Mutation p.G16A 0.33 tolerated(0.2) probably_damaging(0.998) TCGA-14-1043-01 19 11594572 11594572 G A ZNF653 Silent p.C591C 0.33 TCGA-14-1043-01 19 9062384 9062384 G T MUC16 Silent p.T8354T 0.20 TCGA-14-1043-01 1 155291139 155291139 G A RUSC1 Intron 0.39 TCGA-14-1043-01 1 158617395 158617395 C T SPTA1 Missense_Mutation p.R1277H 0.24 tolerated(0.15) benign(0.011) TCGA-14-1043-01 1 179989186 179989186 C G CEP350 Silent p.L759L 0.25 TCGA-14-1043-01 1 43804269 43804269 G A MPL Missense_Mutation p.R90Q 0.05 deleterious(0.02) benign(0.319) TCGA-14-1043-01 1 46769423 46769423 A G UQCRH 5'UTR 0.21 TCGA-14-1043-01 20 37580810 37580811 - T FAM83D Frame_Shift_Ins p.S500Ifs*32 0.19 TCGA-14-1043-01 20 56140691 56140691 A C PCK1 Missense_Mutation p.K567T 0.70 tolerated(0.53) benign(0.003) TCGA-14-1043-01 21 33331245 33331245 C A HUNK Missense_Mutation p.D279E 0.22 deleterious(0.05) possibly_damaging(0.881) TCGA-14-1043-01 3 180651171 180651172 AT - FXR1 Frame_Shift_Del p.N34Kfs*11 0.18 TCGA-14-1043-01 3 49896857 49896857 G T CAMKV Missense_Mutation p.P467Q 0.29 deleterious_low_confidence(0) possibly_damaging(0.627) TCGA-14-1043-01 3 99891168 99891168 G A CMSS1 Silent p.A196A 0.21 TCGA-14-1043-01 5 137524677 137524677 A G CDC23 Missense_Mutation p.V595A 0.21 tolerated(0.13) benign(0.015) TCGA-14-1043-01 5 147012259 147012259 C T JAKMIP2 Missense_Mutation p.R587Q 0.25 deleterious(0) probably_damaging(0.964) TCGA-14-1043-01 5 38950386 38950386 A C RICTOR Missense_Mutation p.N1188K 0.25 tolerated(0.58) benign(0.019) TCGA-14-1043-01 5 75427791 75427791 C T SV2C Silent p.D72D 0.27 TCGA-14-1043-01 5 90671379 90671379 A C ARRDC3 Missense_Mutation p.S188A 0.23 tolerated(0.27) possibly_damaging(0.526) TCGA-14-1043-01 6 3155000 3155000 G A TUBB2A Silent p.S145S 0.16 TCGA-14-1043-01 6 75866132 75866132 G A COL12A1 Missense_Mutation p.R1031C 0.22 probably_damaging(0.939) TCGA-14-1043-01 6 90578080 90578080 G A CASP8AP2 RNA 0.17 TCGA-14-1043-01 7 92147239 92147239 T C PEX1 Missense_Mutation p.K197R 0.18 tolerated(0.48) benign(0.001) TCGA-14-1043-01 9 116858751 116858751 G A KIF12 Silent p.S80S 0.20 TCGA-14-1395-01 10 106960921 106960921 G A SORCS3 Missense_Mutation p.R724H 0.95 deleterious(0) probably_damaging(0.978) TCGA-14-1395-01 10 16994307 16994307 T - CUBN Frame_Shift_Del p.N1646Tfs*12 0.59 TCGA-14-1395-01 10 89711928 89711928 A - PTEN Frame_Shift_Del p.K183Rfs*16 0.52 TCGA-14-1395-01 11 124120779 124120779 G A OR8G1 Silent p.A119A 0.43 TCGA-14-1395-01 11 129306839 129306839 G A BARX2 Silent p.T127T 0.50 TCGA-14-1395-01 11 58338166 58338166 C T LPXN Missense_Mutation p.E17K 0.48 tolerated(0.06) benign(0.047) TCGA-14-1395-01 11 61511463 61511463 C T DAGLA Silent p.D877D 0.38 TCGA-14-1395-01 11 65272864 65272865 TT - MALAT1 RNA 0.31 TCGA-14-1395-01 11 89531775 89531775 T C TRIM49 Silent p.E294E 0.21 TCGA-14-1395-01 12 101588904 101588904 G A SLC5A8 Missense_Mutation p.T169M 0.42 deleterious(0) probably_damaging(0.995) TCGA-14-1395-01 12 130185158 130185158 G A TMEM132D Silent p.N55N 0.43 TCGA-14-1395-01 12 47186771 47186771 G A SLC38A4 Silent p.I28I 0.45 TCGA-14-1395-01 12 73046870 73046870 G A TRHDE Missense_Mutation p.R928Q 0.37 tolerated(0.09) benign(0.32) TCGA-14-1395-01 13 29599206 29599206 C T MTUS2 Missense_Mutation p.T134M 0.13 tolerated(0.09) benign(0.003) TCGA-14-1395-01 14 104641823 104641823 C T KIF26A Nonsense_Mutation p.R900* 0.27 TCGA-14-1395-01 15 25315652 25315652 G A SNORD116-8 RNA 0.48 TCGA-14-1395-01 15 63618489 63618489 C T CA12 Missense_Mutation p.A354T 0.48 tolerated_low_confidence(0.07) benign(0.359) TCGA-14-1395-01 16 81015432 81015432 C T CMC2 Silent p.L44L 0.46 TCGA-14-1395-01 17 39041110 39041110 C T KRT20 Missense_Mutation p.A110T 0.45 tolerated(0.97) benign(0.082) TCGA-14-1395-01 17 40696365 40696365 G A NAGLU 3'UTR 0.48 TCGA-14-1395-01 17 40823101 40823101 G A PLEKHH3 Silent p.N444N 0.52 TCGA-14-1395-01 18 44260326 44260326 C T ST8SIA5 Silent p.S270S 0.47 TCGA-14-1395-01 19 12874555 12874555 G A HOOK2 Missense_Mutation p.A622V 0.31 tolerated(0.22) benign(0.009) TCGA-14-1395-01 19 18255858 18255858 C G MAST3 Missense_Mutation p.S924C 0.39 deleterious(0) probably_damaging(0.998) TCGA-14-1395-01 19 37903536 37903536 G A ZNF569 Missense_Mutation p.S675L 0.32 tolerated(0.05) probably_damaging(0.984) TCGA-14-1395-01 19 44932748 44932748 G A ZNF229 Silent p.G736G 0.31 TCGA-14-1395-01 19 48919313 48919313 C T GRIN2D Missense_Mutation p.R546C 0.44 deleterious(0) possibly_damaging(0.769) TCGA-14-1395-01 19 53741592 53741592 G T ZNF677 Missense_Mutation p.H130N 0.19 tolerated(0.32) benign(0.05) TCGA-14-1395-01 19 7794248 7794248 G A CLEC4G 3'UTR 0.24 TCGA-14-1395-01 1 104297194 104297194 C T AMY1C Nonsense_Mutation p.R318* 0.12 TCGA-14-1395-01 1 185956668 185956668 T C HMCN1 Missense_Mutation p.W1014R 0.11 probably_damaging(0.998) TCGA-14-1395-01 1 196964877 196964877 A T CFHR5 Missense_Mutation p.Q213L 0.50 deleterious(0) possibly_damaging(0.534) TCGA-14-1395-01 1 228400217 228400217 C T OBSCN Missense_Mutation p.R245C 0.26 probably_damaging(0.994) TCGA-14-1395-01 1 233511808 233511808 G C MLK4 Missense_Mutation p.E608Q 0.43 tolerated(0.06) benign(0.285) TCGA-14-1395-01 1 234541656 234541656 C T TARBP1 Missense_Mutation p.G1328R 0.37 deleterious(0.02) probably_damaging(0.996) TCGA-14-1395-01 1 55096492 55096492 G A ACOT11 Missense_Mutation p.R572H 0.27 benign(0.002) TCGA-14-1395-01 21 45821664 45821664 G A TRPM2 Missense_Mutation p.A808T 0.46 tolerated(0.21) benign(0.01) TCGA-14-1395-01 22 24483514 24483514 G A CABIN1 Missense_Mutation p.V1125I 0.45 deleterious(0.03) probably_damaging(0.987) TCGA-14-1395-01 22 35481772 35481772 C T ISX 3'UTR 0.56 TCGA-14-1395-01 2 169783711 169783711 A T ABCB11 Silent p.A1191A 0.19 TCGA-14-1395-01 2 191301881 191301881 G T MFSD6 Missense_Mutation p.G376C 0.45 tolerated(0.06) possibly_damaging(0.606) TCGA-14-1395-01 2 220246112 220246112 G A DNPEP Missense_Mutation p.A395V 0.43 deleterious(0.01) probably_damaging(0.986) TCGA-14-1395-01 2 241808652 241808652 C T AGXT Silent p.V77V 0.39 TCGA-14-1395-01 3 111918295 111918295 G A SLC9C1 Missense_Mutation p.P799L 0.45 deleterious(0.01) probably_damaging(0.947) TCGA-14-1395-01 3 1415706 1415706 G - CNTN6 Frame_Shift_Del p.I683Lfs*11 0.35 TCGA-14-1395-01 3 169557943 169557943 G A LRRC31 Nonsense_Mutation p.R496* 0.40 TCGA-14-1395-01 3 194061799 194061799 G A CPN2 Missense_Mutation p.P545S 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-14-1395-01 4 113107978 113107978 C T C4orf32 Nonsense_Mutation p.R95* 0.46 TCGA-14-1395-01 4 265913 265913 T G ZNF732 Missense_Mutation p.T245P 0.38 deleterious(0.02) probably_damaging(0.97) TCGA-14-1395-01 4 265995 265995 A T ZNF732 Missense_Mutation p.H217Q 0.55 deleterious(0) benign(0.13) TCGA-14-1395-01 4 70351001 70351001 G A UGT2B4 Missense_Mutation p.A412V 0.46 deleterious(0) probably_damaging(0.992) TCGA-14-1395-01 4 70620981 70620981 T C SULT1B1 Splice_Site 0.60 TCGA-14-1395-01 5 140564331 140564331 C T PCDHB16 Missense_Mutation p.P733S 0.46 tolerated_low_confidence(0.06) benign(0.046) TCGA-14-1395-01 5 19721516 19721516 C T CDH18 Missense_Mutation p.A195T 0.41 deleterious(0.02) probably_damaging(0.994) TCGA-14-1395-01 5 637858 637858 C T CEP72 Silent p.N377N 0.50 TCGA-14-1395-01 6 151687420 151687420 G A ZBTB2 Missense_Mutation p.R261W 0.50 deleterious(0.01) probably_damaging(0.998) TCGA-14-1395-01 6 26056384 26056385 - C HIST1H1C Frame_Shift_Ins p.T92Hfs*15 0.34 TCGA-14-1395-01 6 89975454 89975454 G A GABRR2 Missense_Mutation p.T256M 0.43 tolerated(0.06) probably_damaging(1) TCGA-14-1395-01 7 143657328 143657328 C A OR2F1 Missense_Mutation p.H89N 0.23 tolerated(0.08) benign(0.042) TCGA-14-1395-01 7 55220295 55220295 A T EGFR Missense_Mutation p.S229C 0.78 deleterious(0) probably_damaging(0.911) TCGA-14-1395-01 8 71068332 71068338 ATCTTTA - NCOA2 Frame_Shift_Del p.K755Lfs*6 0.31 TCGA-14-1395-01 9 137676834 137676834 G T COL5A1 Splice_Site p.X829_splice 0.93 TCGA-14-1395-01 X 140994696 140994696 T A MAGEC1 Silent p.T502T 0.90 TCGA-14-1450-01 10 102710503 102710503 G A FAM178A Missense_Mutation p.G1108E 0.47 tolerated(0.39) possibly_damaging(0.786) TCGA-14-1450-01 10 104404874 104404874 G A TRIM8 Missense_Mutation p.C167Y 0.44 deleterious(0) probably_damaging(0.997) TCGA-14-1450-01 10 115388695 115388695 G A NRAP Missense_Mutation p.A709V 0.19 deleterious(0) benign(0.125) TCGA-14-1450-01 10 117884937 117884937 G A GFRA1 Missense_Mutation p.R189C 0.52 deleterious(0) probably_damaging(0.998) TCGA-14-1450-01 10 129905312 129905312 G A MKI67 Nonsense_Mutation p.R1598* 0.47 TCGA-14-1450-01 10 82330026 82330026 G T SH2D4B Missense_Mutation p.A101S 0.53 deleterious(0.01) benign(0.159) TCGA-14-1450-01 11 108788719 108788719 T C DDX10 Silent p.D808D 0.25 TCGA-14-1450-01 11 114453240 114453240 G A NXPE4 Silent p.D200D 0.11 TCGA-14-1450-01 11 128354828 128354828 G A ETS1 Missense_Mutation p.S251L 0.27 tolerated(0.09) benign(0.001) TCGA-14-1450-01 11 18195645 18195645 G A MRGPRX4 Missense_Mutation p.R281H 0.29 tolerated(0.06) benign(0.014) TCGA-14-1450-01 11 55587380 55587380 C A OR5D18 Missense_Mutation p.T92N 0.22 deleterious(0.03) benign(0.021) TCGA-14-1450-01 11 56949947 56949947 C T LRRC55 Missense_Mutation p.R194W 0.32 deleterious(0.01) possibly_damaging(0.736) TCGA-14-1450-01 11 58605817 58605817 T C GLYATL2 Missense_Mutation p.K35E 0.43 tolerated(0.16) benign(0.131) TCGA-14-1450-01 11 82643154 82643154 T A C11orf82 Missense_Mutation p.F258L 0.35 tolerated(0.4) benign(0.012) TCGA-14-1450-01 12 112622897 112622897 C T HECTD4 Silent p.S3145S 0.60 TCGA-14-1450-01 12 24736591 24736591 T C LINC00477 RNA 0.04 TCGA-14-1450-01 12 57861990 57861990 G C GLI1 Missense_Mutation p.V431L 0.26 tolerated(0.09) probably_damaging(0.989) TCGA-14-1450-01 12 7848193 7848193 G A GDF3 Silent p.F44F 0.20 TCGA-14-1450-01 13 19752399 19752399 C T TUBA3C Missense_Mutation p.R121Q 0.32 tolerated_low_confidence(0.08) benign(0.01) TCGA-14-1450-01 13 28919630 28919630 C T FLT1 Silent p.A769A 0.35 TCGA-14-1450-01 14 105417016 105417016 A T AHNAK2 Missense_Mutation p.L1591H 0.30 probably_damaging(0.982) TCGA-14-1450-01 14 20917163 20917163 C T OSGEP Missense_Mutation p.D173N 0.25 deleterious(0.04) benign(0.168) TCGA-14-1450-01 14 88737215 88737215 G A KCNK10 Intron 0.44 TCGA-14-1450-01 14 97022277 97022277 C G PAPOLA Missense_Mutation p.S586R 0.36 tolerated(0.22) benign(0.303) TCGA-14-1450-01 15 25488655 25488655 C T SNORD115-40 5'Flank 0.33 TCGA-14-1450-01 15 30012191 30012192 - T TJP1 Nonsense_Mutation p.Y931* 0.27 TCGA-14-1450-01 19 11417292 11417292 G A TSPAN16 Missense_Mutation p.G155R 0.20 deleterious(0) probably_damaging(0.997) TCGA-14-1450-01 19 15224820 15224820 A G SYDE1 3'UTR 0.22 TCGA-14-1450-01 19 15272328 15272328 G A NOTCH3 Silent p.H2037H 0.18 TCGA-14-1450-01 19 3959627 3959627 C T DAPK3 Silent p.R279R 0.29 TCGA-14-1450-01 19 50251361 50251361 C T TSKS Missense_Mutation p.G187E 0.27 tolerated(0.9) probably_damaging(1) TCGA-14-1450-01 19 6416419 6416419 C A KHSRP Splice_Site p.X497_splice 0.13 TCGA-14-1450-01 19 6467056 6467056 C T CRB3 3'UTR 0.08 TCGA-14-1450-01 1 156764463 156764463 C T PRCC Missense_Mutation p.R396W 0.39 deleterious(0) probably_damaging(0.969) TCGA-14-1450-01 1 181689358 181689358 C T CACNA1E Missense_Mutation p.R590W 0.29 deleterious(0) possibly_damaging(0.898) TCGA-14-1450-01 1 214170642 214170642 A G PROX1 Missense_Mutation p.E255G 0.30 deleterious(0) probably_damaging(1) TCGA-14-1450-01 1 57333307 57333307 G A C8A Missense_Mutation p.A35T 0.17 tolerated(0.42) benign(0.001) TCGA-14-1450-01 20 31022345 31022345 C T ASXL1 Silent p.G610G 0.25 TCGA-14-1450-01 20 34560629 34560629 C T CNBD2 Missense_Mutation p.R44W 0.31 deleterious(0.02) probably_damaging(0.999) TCGA-14-1450-01 2 108443529 108443529 G A RGPD4 Silent p.P20P 0.48 TCGA-14-1450-01 2 113890404 113890404 G A IL1RN Missense_Mutation p.E167K 0.27 tolerated(0.28) benign(0.033) TCGA-14-1450-01 2 233274348 233274348 C T ALPPL2 Silent p.D455D 0.28 TCGA-14-1450-01 2 37215846 37215846 C T HEATR5B Missense_Mutation p.V1952I 0.28 tolerated(0.47) benign(0.012) TCGA-14-1450-01 3 119300961 119300961 G A ADPRH Intron 0.29 TCGA-14-1450-01 3 173999000 173999000 C A NLGN1 Silent p.P793P 0.10 TCGA-14-1450-01 4 100268197 100268197 T A ADH1C Missense_Mutation p.E75D 0.31 benign(0.369) TCGA-14-1450-01 4 146576356 146576356 A T MMAA Nonsense_Mutation p.K343* 0.30 TCGA-14-1450-01 4 186382220 186382220 G A CCDC110 Missense_Mutation p.R111C 0.24 tolerated(0.09) benign(0.002) TCGA-14-1450-01 4 71114964 71114964 C A CSN3 Missense_Mutation p.L113M 0.15 tolerated(0.21) possibly_damaging(0.486) TCGA-14-1450-01 4 73984505 73984505 C T ANKRD17 Missense_Mutation p.G1363D 0.23 possibly_damaging(0.823) TCGA-14-1450-01 5 127671244 127671244 G A FBN2 Silent p.N1250N 0.32 TCGA-14-1450-01 5 177547367 177547367 C T N4BP3 Silent p.H173H 0.34 TCGA-14-1450-01 5 180166656 180166656 T C OR2Y1 Missense_Mutation p.I135V 0.11 tolerated(0.14) benign(0.005) TCGA-14-1450-01 6 142397171 142397171 G A NMBR Missense_Mutation p.R263C 0.50 deleterious(0) probably_damaging(0.961) TCGA-14-1450-01 6 150464589 150464589 G A PPP1R14C Silent p.L87L 0.44 TCGA-14-1450-01 6 51918901 51918901 G A PKHD1 Silent p.I633I 0.38 TCGA-14-1450-01 6 52013794 52013794 C T MIR133B RNA 0.29 TCGA-14-1450-01 7 106786905 106786905 T G PRKAR2B Missense_Mutation p.L247W 0.19 deleterious(0) probably_damaging(1) TCGA-14-1450-01 7 18067222 18067222 C T PRPS1L1 Missense_Mutation p.E62K 0.27 tolerated(0.3) benign(0.033) TCGA-14-1450-01 7 73011080 73011080 G A MLXIPL Missense_Mutation p.P571S 0.33 tolerated(0.47) benign(0.009) TCGA-14-1450-01 7 95616403 95616403 G A DYNC1I1 Missense_Mutation p.R277H 0.07 deleterious(0.03) probably_damaging(0.997) TCGA-14-1450-01 7 99332692 99332692 C T CYP3A7 Missense_Mutation p.V9M 0.17 tolerated(0.93) benign(0.001) TCGA-14-1450-01 9 107360795 107360795 G T OR13C5 Missense_Mutation p.N300K 0.16 deleterious(0) probably_damaging(0.997) TCGA-14-1450-01 9 139959160 139959160 C T SAPCD2 Missense_Mutation p.R379H 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-14-1450-01 9 34996743 34996743 C T DNAJB5 Silent p.G345G 0.28 TCGA-14-1450-01 X 123518365 123518365 C T TENM1 Missense_Mutation p.R2139H 0.18 deleterious(0) probably_damaging(0.994) TCGA-14-1450-01 X 127185914 127185914 T G ACTRT1 Missense_Mutation p.H91P 0.20 deleterious(0) possibly_damaging(0.904) TCGA-14-1450-01 X 135754253 135754253 T A ARHGEF6 Missense_Mutation p.Q687H 0.09 tolerated(0.22) benign(0.033) TCGA-14-1450-01 X 152936012 152936012 C T PNCK Missense_Mutation p.R394Q 0.07 tolerated(0.14) benign(0.021) TCGA-14-1450-01 X 19391804 19391804 C T MAP3K15 Missense_Mutation p.R928H 0.15 tolerated(0.08) benign(0.002) TCGA-14-1450-01 X 30746924 30746924 T C GK 3'UTR 0.12 TCGA-14-1450-01 X 47307679 47307679 C T ZNF41 Missense_Mutation p.C497Y 0.21 deleterious(0) probably_damaging(1) TCGA-14-1450-01 X 51487380 51487380 G A GSPT2 Missense_Mutation p.G220R 0.34 deleterious(0) probably_damaging(0.953) TCGA-14-1450-01 X 99901287 99901287 C - SRPX2 5'UTR 0.26 TCGA-14-1456-01 10 50959004 50959004 C A OGDHL Missense_Mutation p.W259C 0.10 deleterious(0) probably_damaging(0.981) TCGA-14-1456-01 15 50515253 50515253 A G SLC27A2 Missense_Mutation p.D355G 0.37 tolerated(0.07) possibly_damaging(0.643) TCGA-14-1456-01 15 85234816 85234816 C T SEC11A Silent p.K37K 0.21 TCGA-14-1456-01 16 29755735 29755735 C T C16orf54 Missense_Mutation p.V180I 0.55 tolerated_low_confidence(0.26) benign(0) TCGA-14-1456-01 16 81211460 81211460 C T PKD1L2 Intron 0.09 TCGA-14-1456-01 17 73043590 73043590 A G KCTD2 Missense_Mutation p.Y82C 0.39 tolerated(0.07) benign(0.204) TCGA-14-1456-01 17 7578190 7578190 T C TP53 Missense_Mutation p.Y220C 0.73 deleterious(0) probably_damaging(1) TCGA-14-1456-01 18 74074416 74074416 C T ZNF516 3'UTR 0.52 TCGA-14-1456-01 19 36036176 36036176 G A GAPDHS 3'UTR 0.58 TCGA-14-1456-01 1 243507526 243507526 G C SDCCAG8 Missense_Mutation p.E456Q 0.32 deleterious(0) probably_damaging(0.996) TCGA-14-1456-01 1 243507574 243507574 G A SDCCAG8 Missense_Mutation p.E472K 0.42 deleterious(0) probably_damaging(0.996) TCGA-14-1456-01 1 26524560 26524560 T G CATSPER4 Missense_Mutation p.F224V 0.08 tolerated(0.19) benign(0.219) TCGA-14-1456-01 20 40049780 40049780 C T CHD6 Missense_Mutation p.C1832Y 0.34 tolerated_low_confidence(1) benign(0.001) TCGA-14-1456-01 20 47267957 47267957 C T PREX1 Missense_Mutation p.G878S 0.34 tolerated(0.11) probably_damaging(0.986) TCGA-14-1456-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.28 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-14-1456-01 2 233274433 233274433 G A ALPPL2 Missense_Mutation p.A484T 0.08 deleterious(0) probably_damaging(0.994) TCGA-14-1456-01 2 234967503 234967503 C G SPP2 Missense_Mutation p.N78K 0.35 deleterious(0.04) benign(0.026) TCGA-14-1456-01 2 239157759 239157759 G A PER2 Missense_Mutation p.R1188C 0.42 tolerated(0.2) benign(0.027) TCGA-14-1456-01 5 67589147 67589147 A G PIK3R1 Missense_Mutation p.K379E 0.21 deleterious(0) probably_damaging(1) TCGA-14-1456-01 5 94936730 94936730 T C ARSK Missense_Mutation p.Y426H 0.41 deleterious(0) probably_damaging(1) TCGA-14-1456-01 6 31729252 31729252 G A MSH5 Missense_Mutation p.D682N 0.07 deleterious(0.01) probably_damaging(0.996) TCGA-14-1456-01 6 47547178 47547178 C T CD2AP Missense_Mutation p.P321S 0.35 deleterious(0) probably_damaging(1) TCGA-14-1456-01 7 31614260 31614260 T A CCDC129 Missense_Mutation p.F194I 0.08 deleterious(0) probably_damaging(0.999) TCGA-14-1456-01 7 55219021 55219021 C T EGFR Silent p.S198S 0.23 TCGA-14-1456-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.23 deleterious(0.02) probably_damaging(0.974) TCGA-14-1456-01 8 145947815 145947815 G A ZNF251 Silent p.C410C 0.06 TCGA-14-1456-01 8 70488235 70488235 A C SULF1 Missense_Mutation p.K68T 0.19 deleterious(0.02) benign(0.088) TCGA-14-1456-01 9 101052880 101052880 C G GABBR2 Missense_Mutation p.V938L 0.32 tolerated_low_confidence(0.25) benign(0.057) TCGA-14-1456-01 9 139925805 139925805 C T FUT7 Missense_Mutation p.G129D 0.20 tolerated(0.29) benign(0.066) TCGA-14-1456-01 9 87285536 87285536 G A NTRK2 5'UTR 0.09 TCGA-14-1456-01 X 55650997 55650997 C T FOXR2 Missense_Mutation p.R285C 0.05 deleterious(0.04) possibly_damaging(0.563) TCGA-14-1456-01 X 76872118 76872118 C G ATRX Missense_Mutation p.Q1843H 0.73 probably_damaging(1) TCGA-14-1456-01 X 79282295 79282295 C A TBX22 Silent p.P242P 0.12 TCGA-14-1823-01 11 64825878 64825878 T A NAALADL1 Missense_Mutation p.D39V 0.09 deleterious(0.01) probably_damaging(0.92) TCGA-14-1823-01 11 65743897 65743897 G A SART1 Missense_Mutation p.R535H 0.32 tolerated(0.11) possibly_damaging(0.616) TCGA-14-1823-01 12 105600948 105600948 C T APPL2 Missense_Mutation p.R177Q 0.05 deleterious(0) probably_damaging(0.927) TCGA-14-1823-01 12 46594885 46594885 G C SLC38A1 Missense_Mutation p.F333L 0.17 deleterious(0) probably_damaging(0.992) TCGA-14-1823-01 12 55688832 55688832 C T OR6C6 Missense_Mutation p.R62H 0.20 deleterious_low_confidence(0.02) benign(0.046) TCGA-14-1823-01 14 25100297 25100297 T C GZMB Missense_Mutation p.K242E 0.19 tolerated(0.3) benign(0.001) TCGA-14-1823-01 14 76957925 76957925 A C ESRRB Missense_Mutation p.D308A 0.32 deleterious(0) possibly_damaging(0.826) TCGA-14-1823-01 14 90528848 90528848 C T KCNK13 Missense_Mutation p.A100V 0.40 deleterious(0) probably_damaging(0.994) TCGA-14-1823-01 15 79760745 79760745 C T KIAA1024 3'UTR 0.09 TCGA-14-1823-01 17 26862064 26862064 C G FOXN1 Missense_Mutation p.P492R 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-14-1823-01 17 46805737 46805737 C A HOXB13 Silent p.T73T 0.05 TCGA-14-1823-01 17 78262155 78262155 C G RNF213 Missense_Mutation p.A268G 0.09 benign(0.059) TCGA-14-1823-01 18 5419899 5419899 C T EPB41L3 Intron 0.04 TCGA-14-1823-01 19 35718884 35718884 A T FAM187B Missense_Mutation p.C234S 0.15 deleterious(0) probably_damaging(0.999) TCGA-14-1823-01 19 57647409 57647409 C G ZIM3 Missense_Mutation p.S99T 0.14 tolerated(0.7) benign(0.018) TCGA-14-1823-01 19 7987785 7987785 C G SNAPC2 3'UTR 0.19 TCGA-14-1823-01 1 152283694 152283694 T C FLG Missense_Mutation p.D1223G 0.17 possibly_damaging(0.539) TCGA-14-1823-01 1 175372637 175372637 C T TNR Silent p.P205P 0.26 TCGA-14-1823-01 1 17721458 17721458 G A PADI6 RNA 0.18 TCGA-14-1823-01 1 19546124 19546124 T C EMC1 Missense_Mutation p.Q914R 0.04 deleterious(0.02) possibly_damaging(0.888) TCGA-14-1823-01 1 196871608 196871608 G A CFHR4 Missense_Mutation p.R39H 0.08 tolerated(0.53) probably_damaging(0.993) TCGA-14-1823-01 1 20992723 20992723 G A KIF17 Silent p.D965D 0.25 TCGA-14-1823-01 1 27240176 27240176 G A NR0B2 Missense_Mutation p.R86W 0.26 tolerated(0.14) benign(0.005) TCGA-14-1823-01 1 49224936 49224936 C T BEND5 Silent p.P127P 0.15 TCGA-14-1823-01 20 43048412 43048412 G A HNF4A Missense_Mutation p.R263Q 0.31 tolerated(0.09) probably_damaging(0.991) TCGA-14-1823-01 20 43545422 43545422 G A PABPC1L Missense_Mutation p.R138Q 0.25 deleterious(0) possibly_damaging(0.87) TCGA-14-1823-01 20 43938206 43938206 G T RBPJL Splice_Site p.X44_splice 0.16 TCGA-14-1823-01 2 107049596 107049596 G C RGPD3 Missense_Mutation p.T784S 0.12 tolerated(0.3) benign(0.001) TCGA-14-1823-01 2 125405459 125405459 C T CNTNAP5 Silent p.A666A 0.15 TCGA-14-1823-01 2 138033556 138033556 G A THSD7B Silent p.T820T 0.15 TCGA-14-1823-01 2 165551266 165551266 T C COBLL1 Missense_Mutation p.Y917C 0.28 deleterious(0) probably_damaging(0.999) TCGA-14-1823-01 2 179454479 179454479 G A TTN Missense_Mutation p.T20658I 0.17 TCGA-14-1823-01 2 192288692 192288692 G A MYO1B 3'UTR 0.17 TCGA-14-1823-01 2 233899574 233899574 C T NEU2 Missense_Mutation p.A317V 0.21 deleterious(0.02) benign(0.006) TCGA-14-1823-01 2 242149970 242149970 G A ANO7 Missense_Mutation p.V570I 0.27 tolerated(0.49) benign(0.013) TCGA-14-1823-01 2 90139462 90139462 G A IGKV1D-16 Missense_Mutation p.S78N 0.22 deleterious(0.01) benign(0.045) TCGA-14-1823-01 3 108698509 108698509 A T MORC1 Missense_Mutation p.L777H 0.05 tolerated(0.54) benign(0.003) TCGA-14-1823-01 3 23942514 23942514 C A NKIRAS1 Missense_Mutation p.D41Y 0.26 deleterious(0) probably_damaging(0.986) TCGA-14-1823-01 3 53909976 53909976 G A ACTR8 Missense_Mutation p.R304W 0.30 deleterious(0) probably_damaging(0.997) TCGA-14-1823-01 3 97167503 97167503 A T EPHA6 Missense_Mutation p.H608L 0.30 deleterious(0.05) benign(0.311) TCGA-14-1823-01 3 9798237 9798237 G A OGG1 Missense_Mutation p.R277H 0.36 deleterious(0.01) benign(0.027) TCGA-14-1823-01 4 169196591 169196591 G A DDX60 Missense_Mutation p.R737W 0.23 deleterious(0) probably_damaging(1) TCGA-14-1823-01 4 169432592 169432592 A T PALLD 5'UTR 0.08 TCGA-14-1823-01 4 69796959 69796959 A C UGT2A3 Missense_Mutation p.V333G 0.21 deleterious(0) probably_damaging(1) TCGA-14-1823-01 6 105573416 105573416 C T BVES Missense_Mutation p.R130Q 0.04 deleterious(0.03) probably_damaging(0.989) TCGA-14-1823-01 6 166571970 166571970 C T T Missense_Mutation p.A381T 0.30 tolerated(0.13) benign(0.003) TCGA-14-1823-01 6 73713705 73713705 G T KCNQ5 Missense_Mutation p.S158I 0.28 tolerated(0.14) benign(0.011) TCGA-14-1823-01 6 75858174 75858174 C T COL12A1 Missense_Mutation p.R1396Q 0.20 benign(0.005) TCGA-14-1823-01 7 100685376 100685376 C G MUC17 Missense_Mutation p.T3560S 0.19 benign(0.058) TCGA-14-1823-01 7 137263039 137263039 G A DGKI Nonsense_Mutation p.R559* 0.16 TCGA-14-1823-01 7 19184907 19184907 G A FERD3L Missense_Mutation p.R27C 0.11 deleterious(0.04) benign(0.001) TCGA-14-1823-01 7 48139333 48139333 C A UPP1 Missense_Mutation p.F37L 0.04 tolerated(1) benign(0.014) TCGA-14-1823-01 7 48146585 48146585 G T UPP1 Missense_Mutation p.K184N 0.10 tolerated(0.08) benign(0.031) TCGA-14-1823-01 7 65171400 65171400 G T INTS4L2 Splice_Site 0.09 TCGA-14-1823-01 7 90894669 90894669 A T FZD1 Missense_Mutation p.K158N 0.17 tolerated(0.27) probably_damaging(0.937) TCGA-14-1823-01 8 105503293 105503293 G C LRP12 Missense_Mutation p.L730V 0.33 tolerated(0.11) probably_damaging(0.996) TCGA-14-1823-01 8 18432725 18432725 A G PSD3 Missense_Mutation p.L851S 0.28 deleterious(0) probably_damaging(1) TCGA-14-1823-01 8 22006477 22006477 C A LGI3 Silent p.V281V 0.38 TCGA-14-1823-01 8 49831516 49831516 G T SNAI2 Missense_Mutation p.N219K 0.14 deleterious(0.01) benign(0.005) TCGA-14-1823-01 8 77763369 77763369 G C ZFHX4 Missense_Mutation p.L1404F 0.15 possibly_damaging(0.765) TCGA-14-1823-01 9 104239089 104239089 C A TMEM246 Missense_Mutation p.A96S 0.12 tolerated(0.78) benign(0.004) TCGA-14-1823-01 9 134022964 134022964 C G NUP214 Missense_Mutation p.S678C 0.25 possibly_damaging(0.526) TCGA-14-1823-01 9 136528932 136528932 C T SARDH 3'UTR 0.35 TCGA-14-1823-01 9 33351731 33351731 G A NFX1 Silent p.P866P 0.28 TCGA-14-1823-01 9 39361192 39361192 C A SPATA31A1 Missense_Mutation p.Q1144K 0.12 tolerated(0.89) benign(0.122) TCGA-14-1823-01 9 79867155 79867155 T C VPS13A Silent p.D725D 0.33 TCGA-14-1823-01 X 48118025 48118025 A T SSX1 Missense_Mutation p.Q80L 0.06 deleterious(0.03) possibly_damaging(0.501) TCGA-14-1823-01 X 49113238 49113238 T A FOXP3 Missense_Mutation p.K206M 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-14-1823-01 X 53590731 53590731 C T HUWE1 Missense_Mutation p.G2361R 0.15 benign(0.161) TCGA-14-1823-01 X 69282974 69282974 C T OTUD6A Silent p.Y200Y 0.10 TCGA-14-1823-01 X 70389968 70389968 A T NLGN3 3'UTR 0.08 TCGA-14-1823-01 X 78216461 78216461 C T P2RY10 Silent p.Y148Y 0.20 TCGA-14-1825-01 10 25313035 25313035 C A THNSL1 Missense_Mutation p.L295M 0.91 tolerated(0.06) benign(0.385) TCGA-14-1825-01 11 130281492 130281492 C T ADAMTS8 Missense_Mutation p.V524M 0.34 tolerated(0.13) benign(0.02) TCGA-14-1825-01 11 4825094 4825094 G T OR52R1 Missense_Mutation p.Q173K 0.41 tolerated(0.34) benign(0.102) TCGA-14-1825-01 11 56380529 56380529 C T OR5M1 Missense_Mutation p.M150I 0.30 tolerated(0.75) benign(0) TCGA-14-1825-01 11 6424912 6424912 G A APBB1 Missense_Mutation p.P288S 0.37 tolerated(0.33) benign(0.06) TCGA-14-1825-01 11 71717105 71717105 C T NUMA1 Missense_Mutation p.G1890R 0.37 benign(0.03) TCGA-14-1825-01 11 76731542 76731542 G A ACER3 3'UTR 0.50 TCGA-14-1825-01 12 125591804 125591804 A C AACS Missense_Mutation p.H302P 0.33 deleterious(0) probably_damaging(1) TCGA-14-1825-01 12 49420539 49420539 A T KMT2D Nonsense_Mutation p.Y5070* 0.32 TCGA-14-1825-01 12 54332758 54332758 C T HOXC13 Missense_Mutation p.A23V 0.30 tolerated(0.54) benign(0.041) TCGA-14-1825-01 12 56231702 56231702 G C MMP19 Missense_Mutation p.L329V 0.40 tolerated(0.05) possibly_damaging(0.882) TCGA-14-1825-01 12 70983775 70983775 C T PTPRB Silent p.L673L 0.18 TCGA-14-1825-01 12 81101567 81101567 G A MYF6 Silent p.Q23Q 0.41 TCGA-14-1825-01 13 111995233 111995233 C A TEX29 Missense_Mutation p.P124T 0.23 tolerated_low_confidence(0.66) possibly_damaging(0.803) TCGA-14-1825-01 13 114079397 114079397 G A ADPRHL1 Silent p.P248P 0.41 TCGA-14-1825-01 13 33002220 33002220 G A N4BP2L1 5'UTR 0.48 TCGA-14-1825-01 13 49281611 49281611 T A CYSLTR2 Missense_Mutation p.C220S 0.46 deleterious(0.01) possibly_damaging(0.71) TCGA-14-1825-01 16 70310471 70310471 G T AARS Missense_Mutation p.L133I 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-14-1825-01 16 83933176 83933176 C G MLYCD Missense_Mutation p.H143D 0.29 deleterious(0.05) benign(0.043) TCGA-14-1825-01 17 16638181 16638181 A C CCDC144A Missense_Mutation p.I866L 0.47 tolerated(0.06) benign(0.173) TCGA-14-1825-01 17 45915450 45915450 C A SCRN2 Intron 0.23 TCGA-14-1825-01 17 58711271 58711271 C T PPM1D Silent p.H253H 0.51 TCGA-14-1825-01 17 7577094 7577094 G A TP53 Missense_Mutation p.R282W 0.36 deleterious(0) probably_damaging(0.997) TCGA-14-1825-01 17 7578263 7578263 G A TP53 Nonsense_Mutation p.R196* 0.47 TCGA-14-1825-01 18 14183719 14183719 G T ANKRD20A5P RNA 0.26 TCGA-14-1825-01 18 2847912 2847912 C T EMILIN2 Silent p.P80P 0.34 TCGA-14-1825-01 19 964375 964375 C A ARID3A Silent p.T298T 0.08 TCGA-14-1825-01 1 10683104 10683104 G T PEX14 Missense_Mutation p.G138V 0.41 tolerated(0.18) probably_damaging(0.972) TCGA-14-1825-01 1 152079703 152079703 G A TCHH 3'UTR 0.62 TCGA-14-1825-01 1 16378220 16378220 G A CLCNKB Missense_Mutation p.R438H 0.42 deleterious(0) probably_damaging(1) TCGA-14-1825-01 1 203029484 203029484 G A PPFIA4 Missense_Mutation p.R402H 0.19 deleterious(0) probably_damaging(0.993) TCGA-14-1825-01 1 47685764 47685764 G A TAL1 Silent p.A208A 0.21 TCGA-14-1825-01 1 62675593 62675593 G A L1TD1 Missense_Mutation p.E383K 0.40 tolerated(0.19) unknown(0) TCGA-14-1825-01 1 87458761 87458761 G C RP5-1052I5.2 5'UTR 0.62 TCGA-14-1825-01 20 19998552 19998552 G A NAA20 Intron 0.41 TCGA-14-1825-01 20 31760743 31760743 C A BPIFA2 Missense_Mutation p.L55I 0.07 tolerated(0.13) benign(0.311) TCGA-14-1825-01 20 33591328 33591328 C T TRPC4AP Missense_Mutation p.R714Q 0.42 tolerated(0.16) benign(0.005) TCGA-14-1825-01 20 51870234 51870234 C T TSHZ2 Silent p.A79A 0.52 TCGA-14-1825-01 20 54824418 54824418 C T MC3R Silent p.G173G 0.40 TCGA-14-1825-01 21 11058294 11058294 G A BAGE2 RNA 0.06 TCGA-14-1825-01 21 31971194 31971194 C T KRTAP6-2 5'UTR 0.43 TCGA-14-1825-01 22 16287300 16287300 C T POTEH Missense_Mutation p.V196I 0.28 tolerated(0.08) probably_damaging(0.951) TCGA-14-1825-01 22 23162008 23162008 G A IGLV3-9 Missense_Mutation p.G34E 0.35 deleterious(0.01) benign(0.404) TCGA-14-1825-01 22 51183292 51183292 G A ACR Missense_Mutation p.R308Q 0.46 tolerated(0.88) benign(0.001) TCGA-14-1825-01 2 131521195 131521195 C T AMER3 Missense_Mutation p.T517M 0.50 tolerated(0.06) benign(0.439) TCGA-14-1825-01 2 137988713 137988713 C T THSD7B Missense_Mutation p.T608M 0.46 deleterious(0.01) possibly_damaging(0.851) TCGA-14-1825-01 2 168101235 168101235 G A XIRP2 Silent p.S1111S 0.36 TCGA-14-1825-01 2 179647001 179647001 G A TTN Silent p.G1106G 0.41 TCGA-14-1825-01 2 74274539 74274539 C T TET3 Missense_Mutation p.P364S 0.59 tolerated(0.11) benign(0.001) TCGA-14-1825-01 3 15468122 15468122 C T METTL6 5'UTR 0.20 TCGA-14-1825-01 3 156422618 156422618 A G TIPARP Missense_Mutation p.M558V 0.21 tolerated(0.21) benign(0.246) TCGA-14-1825-01 3 184648300 184648300 G A VPS8 Missense_Mutation p.G948R 0.63 tolerated(0.13) benign(0.16) TCGA-14-1825-01 4 155528020 155528020 G A FGG Silent p.G322G 0.41 TCGA-14-1825-01 4 71201281 71201281 C T CABS1 Silent p.D175D 0.46 TCGA-14-1825-01 5 140741624 140741624 G A PCDHGB2 Missense_Mutation p.R641H 0.36 deleterious(0.02) possibly_damaging(0.495) TCGA-14-1825-01 5 154396976 154396976 C A KIF4B Missense_Mutation p.A1186D 0.47 tolerated_low_confidence(0.21) benign(0.005) TCGA-14-1825-01 6 121625568 121625568 C T TBC1D32 Missense_Mutation p.R293H 0.46 deleterious(0) probably_damaging(0.981) TCGA-14-1825-01 6 24601369 24601369 C A KIAA0319 5'UTR 0.06 TCGA-14-1825-01 6 26091215 26091215 G A HFE Missense_Mutation p.V75I 0.43 tolerated(0.53) benign(0.007) TCGA-14-1825-01 6 335117 335117 G T DUSP22 Missense_Mutation p.V48F 0.12 deleterious(0.01) possibly_damaging(0.635) TCGA-14-1825-01 7 5097035 5097035 G A RBAK-RBAKDN Missense_Mutation p.S42N 0.25 deleterious(0.05) benign(0.23) TCGA-14-1825-01 8 17447275 17447275 G A PDGFRL Splice_Site p.X118_splice 0.32 TCGA-14-1825-01 9 108110683 108110683 A G SLC44A1 Missense_Mutation p.T151A 0.34 tolerated(0.86) benign(0) TCGA-14-1825-01 9 135961760 135961760 G C CELP RNA 0.26 TCGA-14-1825-01 9 136211100 136211100 A G MED22 Missense_Mutation p.I98T 0.45 deleterious(0) probably_damaging(0.913) TCGA-14-1825-01 9 19120899 19120899 G A PLIN2 Missense_Mutation p.P192S 0.41 deleterious(0) probably_damaging(1) TCGA-14-1825-01 9 6014248 6014248 G T RANBP6 Missense_Mutation p.L454M 0.36 deleterious(0) probably_damaging(0.995) TCGA-14-1825-01 X 125685588 125685588 C T DCAF12L1 Missense_Mutation p.R335H 0.88 deleterious(0) probably_damaging(0.999) TCGA-14-1825-01 X 151303380 151303380 C T MAGEA10 Missense_Mutation p.G238D 0.85 deleterious(0.02) possibly_damaging(0.893) TCGA-14-1825-01 X 47486279 47486279 G T CFP Missense_Mutation p.T278N 0.92 tolerated(0.19) benign(0.043) TCGA-14-1825-01 X 54777770 54777770 C T ITIH6 Silent p.P1132P 0.79 TCGA-14-1829-01 10 50532055 50532055 C A C10orf71 Silent p.R489R 0.10 TCGA-14-1829-01 10 98156950 98156950 C T TLL2 Silent p.A459A 0.41 TCGA-14-1829-01 11 116691628 116691628 C T APOA4 Silent p.E382E 0.28 TCGA-14-1829-01 11 124754740 124754740 A C ROBO4 3'UTR 0.27 TCGA-14-1829-01 11 59244963 59244963 C T OR4D10 Missense_Mutation p.R21W 0.27 tolerated(0.25) benign(0) TCGA-14-1829-01 11 6191349 6191349 C T OR52B2 Missense_Mutation p.V70I 0.28 tolerated(0.81) benign(0) TCGA-14-1829-01 12 100811900 100811900 G A SLC17A8 Missense_Mutation p.C464Y 0.35 deleterious(0) probably_damaging(1) TCGA-14-1829-01 12 6497971 6497971 C T LTBR Silent p.L261L 0.46 TCGA-14-1829-01 13 46358034 46358034 G A SIAH3 Silent p.H98H 0.29 TCGA-14-1829-01 14 102028607 102028607 C T DIO3 Silent p.F258F 0.17 TCGA-14-1829-01 14 80328137 80328137 G A NRXN3 Missense_Mutation p.A1006T 0.17 deleterious(0) benign(0.004) TCGA-14-1829-01 15 49076318 49076318 C T CEP152 Splice_Site p.X392_splice 0.38 TCGA-14-1829-01 16 1292079 1292079 C T TPSAB1 Silent p.G222G 0.22 TCGA-14-1829-01 16 18853724 18853724 C T SMG1 Missense_Mutation p.R2091H 0.06 tolerated(0.35) benign(0.002) TCGA-14-1829-01 16 81134661 81134661 G A GCSH 5'Flank 0.38 TCGA-14-1829-01 17 18875008 18875008 G A FAM83G Silent p.D712D 0.31 TCGA-14-1829-01 17 40843451 40843451 C A CNTNAP1 Missense_Mutation p.Q756K 0.04 tolerated(0.09) benign(0.057) TCGA-14-1829-01 17 81042781 81042781 C G METRNL Intron 0.36 TCGA-14-1829-01 17 81042908 81042908 C A METRNL Missense_Mutation p.L89I 0.42 tolerated(0.23) benign(0.421) TCGA-14-1829-01 17 81042984 81042984 C T METRNL Missense_Mutation p.S114F 0.40 tolerated(0.68) benign(0.169) TCGA-14-1829-01 19 12768940 12768940 C G MAN2B1 Missense_Mutation p.E416Q 0.29 deleterious(0.03) possibly_damaging(0.853) TCGA-14-1829-01 19 18171938 18171938 C A IL12RB1 Silent p.G595G 0.17 TCGA-14-1829-01 19 36212329 36212329 C T KMT2B Missense_Mutation p.R694W 0.31 probably_damaging(0.973) TCGA-14-1829-01 19 44980482 44980482 C T ZNF180 3'UTR 0.50 TCGA-14-1829-01 19 54327194 54327194 G A NLRP12 Missense_Mutation p.R79W 0.27 tolerated(0.05) benign(0.126) TCGA-14-1829-01 19 54782762 54782762 C G LILRB2 Missense_Mutation p.S287T 0.10 tolerated(0.1) possibly_damaging(0.74) TCGA-14-1829-01 19 9026244 9026244 G A MUC16 Missense_Mutation p.R12248C 0.26 possibly_damaging(0.888) TCGA-14-1829-01 19 9085463 9085463 C T MUC16 Missense_Mutation p.A2118T 0.21 unknown(0) TCGA-14-1829-01 1 11151619 11151619 C G EXOSC10 Missense_Mutation p.K136N 0.32 deleterious(0) possibly_damaging(0.821) TCGA-14-1829-01 1 11334002 11334002 C G UBIAD1 Silent p.L138L 0.29 TCGA-14-1829-01 1 152080828 152080828 C T TCHH Missense_Mutation p.R1622H 0.34 unknown(0) TCGA-14-1829-01 1 159283794 159283794 T A OR10J3 Missense_Mutation p.Y219F 0.05 deleterious(0) probably_damaging(0.994) TCGA-14-1829-01 1 160456502 160456502 C T SLAMF6 Missense_Mutation p.V332M 0.28 tolerated(0.31) benign(0.032) TCGA-14-1829-01 1 205312607 205312607 G A KLHDC8A Silent p.N42N 0.25 TCGA-14-1829-01 1 220340949 220340949 C A RAB3GAP2 Missense_Mutation p.A959S 0.34 tolerated(0.77) benign(0.272) TCGA-14-1829-01 1 222717502 222717502 G A HHIPL2 Silent p.Y117Y 0.39 TCGA-14-1829-01 1 229606471 229606471 G A NUP133 Silent p.A644A 0.31 TCGA-14-1829-01 1 33646782 33646782 G C TRIM62 Silent p.L84L 0.26 TCGA-14-1829-01 2 220353375 220353375 G A SPEG Missense_Mutation p.V2672M 0.11 possibly_damaging(0.678) TCGA-14-1829-01 2 242814085 242814085 C T CXXC11 Silent p.Y126Y 0.36 TCGA-14-1829-01 3 109046838 109046838 T G DPPA4 Missense_Mutation p.E304D 0.25 tolerated_low_confidence(0.55) benign(0.001) TCGA-14-1829-01 3 121356079 121356079 C T HCLS1 Missense_Mutation p.R160Q 0.42 deleterious(0.03) unknown(0) TCGA-14-1829-01 3 142741859 142741859 A G U2SURP Missense_Mutation p.N395D 0.33 tolerated(0.68) benign(0.005) TCGA-14-1829-01 3 52327199 52327199 G T GLYCTK 3'UTR 0.11 TCGA-14-1829-01 4 20544133 20544133 T C SLIT2 Silent p.S720S 0.33 TCGA-14-1829-01 4 88973158 88973158 A G PKD2 Missense_Mutation p.I522V 0.09 tolerated(0.38) benign(0.009) TCGA-14-1829-01 5 137846888 137846888 T C ETF1 Silent p.G288G 0.43 TCGA-14-1829-01 5 140530986 140530986 T C PCDHB6 Missense_Mutation p.I383T 0.33 deleterious(0) benign(0.423) TCGA-14-1829-01 5 140554290 140554290 G A PCDHB7 Missense_Mutation p.R625H 0.36 deleterious_low_confidence(0.05) possibly_damaging(0.511) TCGA-14-1829-01 5 140590972 140590972 C A PCDHB12 3'UTR 0.50 TCGA-14-1829-01 5 90055389 90055389 G T GPR98 Missense_Mutation p.G4035V 0.36 probably_damaging(0.999) TCGA-14-1829-01 6 136599627 136599627 C T BCLAF1 Missense_Mutation p.R131Q 0.11 tolerated_low_confidence(0.15) unknown(0) TCGA-14-1829-01 6 41121804 41121804 G A TREML1 Missense_Mutation p.P23L 0.24 tolerated(0.1) possibly_damaging(0.804) TCGA-14-1829-01 6 55196594 55196594 C T GFRAL Missense_Mutation p.A35V 0.28 tolerated(0.14) benign(0.002) TCGA-14-1829-01 7 106508126 106508126 C T PIK3CG Silent p.I40I 0.17 TCGA-14-1829-01 7 108524126 108524126 G A C7orf66 Missense_Mutation p.R96W 0.27 deleterious_low_confidence(0.02) benign(0.14) TCGA-14-1829-01 7 124387325 124387325 C T GPR37 Missense_Mutation p.V366I 0.30 deleterious(0.02) probably_damaging(0.992) TCGA-14-1829-01 7 134212671 134212671 C T AKR1B10 Missense_Mutation p.T3M 0.28 deleterious(0) possibly_damaging(0.743) TCGA-14-1829-01 7 43917037 43917037 G C URGCP Silent p.V675V 0.24 TCGA-14-1829-01 7 43917123 43917123 G T URGCP Missense_Mutation p.P647T 0.34 deleterious(0) probably_damaging(0.911) TCGA-14-1829-01 7 43918034 43918034 G C URGCP Missense_Mutation p.S343C 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-14-1829-01 7 43918768 43918768 G C URGCP Missense_Mutation p.I98M 0.21 deleterious(0) probably_damaging(0.999) TCGA-14-1829-01 7 6183728 6183728 G A USP42 Missense_Mutation p.M297I 0.24 deleterious(0) probably_damaging(0.991) TCGA-14-1829-01 7 99516656 99516656 G A TRIM4 Silent p.I123I 0.32 TCGA-14-1829-01 8 120831592 120831592 G C TAF2 Nonsense_Mutation p.S98* 0.10 TCGA-14-1829-01 8 13947853 13947853 G A SGCZ 3'UTR 0.34 TCGA-14-1829-01 8 146225080 146225080 G C ZNF252P-AS1 5'Flank 0.36 TCGA-14-1829-01 8 163591 163591 G A RPL23AP53 RNA 0.30 TCGA-14-1829-01 8 25718712 25718712 C A EBF2 Missense_Mutation p.A399S 0.37 tolerated_low_confidence(0.09) probably_damaging(0.924) TCGA-14-1829-01 8 74922304 74922304 A G LY96 Missense_Mutation p.K91E 0.33 tolerated(0.08) benign(0.098) TCGA-14-1829-01 9 35045372 35045372 C G C9orf131 Missense_Mutation p.P916A 0.34 deleterious(0.03) benign(0.121) TCGA-14-1829-01 9 84534472 84534472 C A SPATA31D5P RNA 0.08 TCGA-14-1829-01 X 49955579 49955579 G A AKAP4 3'UTR 0.07 TCGA-14-1829-01 X 91132342 91132342 T A PCDH11X Missense_Mutation p.V368D 0.62 deleterious(0) probably_damaging(1) TCGA-14-2554-01 10 50363901 50363901 C A C10orf128 3'UTR 0.06 TCGA-14-2554-01 10 93038067 93038067 C T PCGF5 Silent p.F255F 0.33 TCGA-14-2554-01 11 55541269 55541269 C T OR5D13 Missense_Mutation p.A119V 0.33 tolerated(1) benign(0.001) TCGA-14-2554-01 11 56230864 56230864 G A OR5M9 Missense_Mutation p.T5M 0.29 deleterious(0) possibly_damaging(0.9) TCGA-14-2554-01 11 63585590 63585590 G A C11orf84 Silent p.P147P 0.24 TCGA-14-2554-01 11 64950650 64950650 A G CAPN1 Missense_Mutation p.I107V 0.31 tolerated(0.11) benign(0.056) TCGA-14-2554-01 11 67287267 67287267 C T CABP2 Missense_Mutation p.E212K 0.08 deleterious(0) probably_damaging(0.998) TCGA-14-2554-01 11 67433035 67433035 C T ALDH3B2 Missense_Mutation p.D143N 0.33 tolerated(0.13) benign(0.076) TCGA-14-2554-01 12 119968731 119968731 G A CCDC60 Missense_Mutation p.A472T 0.20 tolerated(0.3) probably_damaging(0.918) TCGA-14-2554-01 12 73015443 73015443 A G TRHDE Missense_Mutation p.I818V 0.59 tolerated(0.08) possibly_damaging(0.509) TCGA-14-2554-01 12 8672917 8672917 G A CLEC4D Silent p.T160T 0.26 TCGA-14-2554-01 13 111077144 111077144 G A COL4A2 Missense_Mutation p.G82R 0.32 probably_damaging(1) TCGA-14-2554-01 13 24242123 24242123 G T TNFRSF19 Silent p.P247P 0.19 TCGA-14-2554-01 13 61103056 61103056 A G TDRD3 Missense_Mutation p.K566R 0.34 tolerated(0.35) benign(0.007) TCGA-14-2554-01 14 106845470 106845470 C T IGHV3-35 Silent p.S68S 0.35 TCGA-14-2554-01 14 107113989 107113989 C A IGHV3-64 Missense_Mutation p.G36W 0.32 deleterious_low_confidence(0) possibly_damaging(0.533) TCGA-14-2554-01 14 20979116 20979116 G A RNASE10 Silent p.K162K 0.33 TCGA-14-2554-01 15 43890515 43890515 T G CKMT1B Missense_Mutation p.L334R 0.36 tolerated(0.37) benign(0.002) TCGA-14-2554-01 16 24358110 24358110 C T CACNG3 Silent p.Y89Y 0.27 TCGA-14-2554-01 16 53671674 53671674 C T RPGRIP1L Silent p.Q1051Q 0.35 TCGA-14-2554-01 16 88724388 88724388 C T MVD Missense_Mutation p.R64Q 0.52 tolerated(0.11) benign(0.007) TCGA-14-2554-01 17 8053154 8053154 G A PER1 Silent p.G190G 0.03 TCGA-14-2554-01 19 1068628 1068628 G A HMHA1 Silent p.E118E 0.23 TCGA-14-2554-01 19 15760895 15760895 C T CYP4F3 Missense_Mutation p.R274W 0.29 deleterious(0.01) possibly_damaging(0.825) TCGA-14-2554-01 19 22155163 22155163 A T ZNF208 Nonsense_Mutation p.C891* 0.27 TCGA-14-2554-01 19 3653547 3653547 T C PIP5K1C Missense_Mutation p.Y221C 0.30 deleterious(0) probably_damaging(0.987) TCGA-14-2554-01 19 46127976 46127976 C T EML2 Splice_Site p.X482_splice 0.20 TCGA-14-2554-01 19 498515 498515 C A MADCAM1 Silent p.T119T 0.21 TCGA-14-2554-01 19 51633283 51633283 C A SIGLEC9 Intron 0.25 TCGA-14-2554-01 19 53792992 53792993 - G BIRC8 Frame_Shift_Ins p.Q212Hfs*4 0.22 TCGA-14-2554-01 19 56300621 56300621 A T NLRP11 Missense_Mutation p.H886Q 0.24 tolerated(0.23) benign(0.035) TCGA-14-2554-01 1 10555347 10555347 G A PEX14 Missense_Mutation p.G18E 0.27 tolerated(0.15) benign(0.037) TCGA-14-2554-01 1 12919972 12919972 G A PRAMEF2 Missense_Mutation p.V238I 0.34 tolerated(0.25) benign(0.006) TCGA-14-2554-01 1 151955606 151955606 C T S100A10 3'UTR 0.35 TCGA-14-2554-01 1 152058703 152058703 G A TCHHL1 Silent p.N485N 0.35 TCGA-14-2554-01 1 192321267 192321267 C T RGS21 Missense_Mutation p.T60M 0.38 deleterious(0.01) probably_damaging(1) TCGA-14-2554-01 1 211192295 211192295 G A KCNH1 Missense_Mutation p.R288C 0.34 deleterious(0) probably_damaging(0.999) TCGA-14-2554-01 1 228479711 228479711 G A OBSCN Silent p.G3913G 0.44 TCGA-14-2554-01 1 248551519 248551519 G A OR2T6 Missense_Mutation p.V204I 0.29 tolerated(0.22) benign(0.182) TCGA-14-2554-01 1 75055329 75055329 C A C1orf173 Missense_Mutation p.G721V 0.07 tolerated(0.13) possibly_damaging(0.854) TCGA-14-2554-01 1 89732739 89732739 A T GBP5 Missense_Mutation p.L176I 0.04 deleterious(0) possibly_damaging(0.904) TCGA-14-2554-01 20 21370041 21370041 T C XRN2 3'UTR 0.17 TCGA-14-2554-01 20 57035877 57035877 A T APCDD1L Missense_Mutation p.V492D 0.22 deleterious(0) possibly_damaging(0.683) TCGA-14-2554-01 21 45861724 45861724 C G TRPM2 3'UTR 0.46 TCGA-14-2554-01 22 31059414 31059414 G A DUSP18 3'UTR 0.34 TCGA-14-2554-01 22 34046457 34046457 A T LARGE Missense_Mutation p.Y102N 0.30 tolerated_low_confidence(0.3) benign(0.051) TCGA-14-2554-01 2 113955141 113955141 C T PSD4 Missense_Mutation p.T796M 0.33 deleterious(0.01) possibly_damaging(0.544) TCGA-14-2554-01 2 135215640 135215640 C T TMEM163 Missense_Mutation p.V258I 0.22 tolerated(0.54) benign(0.003) TCGA-14-2554-01 2 155102330 155102330 C T GALNT13 Missense_Mutation p.T231M 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-14-2554-01 2 179572434 179572434 C A TTN Missense_Mutation p.R9620S 0.34 TCGA-14-2554-01 2 183094871 183094871 A G PDE1A Silent p.I195I 0.31 TCGA-14-2554-01 2 238277593 238277593 G A COL6A3 Missense_Mutation p.R1505C 0.31 probably_damaging(0.993) TCGA-14-2554-01 2 75081444 75081444 C T HK2 Missense_Mutation p.R30C 0.08 tolerated(0.06) possibly_damaging(0.815) TCGA-14-2554-01 3 29985717 29985717 T G RBMS3 Missense_Mutation p.I357S 0.18 tolerated_low_confidence(0.56) benign(0) TCGA-14-2554-01 3 52825916 52825916 G A ITIH1 Missense_Mutation p.D909N 0.29 tolerated(0.41) benign(0.024) TCGA-14-2554-01 4 185310216 185310216 C T IRF2 Missense_Mutation p.R249Q 0.43 tolerated(0.72) benign(0.005) TCGA-14-2554-01 4 48853837 48853837 A C OCIAD1 Missense_Mutation p.K131T 0.06 tolerated(0.21) benign(0.083) TCGA-14-2554-01 4 6594914 6594914 G A MAN2B2 Nonsense_Mutation p.W232* 0.35 TCGA-14-2554-01 4 71201726 71201726 G A CABS1 Missense_Mutation p.V324I 0.41 tolerated(0.91) benign(0.004) TCGA-14-2554-01 4 71507774 71507774 C T ENAM Missense_Mutation p.R211C 0.36 deleterious(0) probably_damaging(0.973) TCGA-14-2554-01 4 74310789 74310789 G T AFP Missense_Mutation p.V265L 0.42 tolerated(0.13) benign(0.111) TCGA-14-2554-01 5 131927096 131927096 A G RAD50 Missense_Mutation p.K545E 0.35 deleterious(0.02) probably_damaging(0.979) TCGA-14-2554-01 5 140242299 140242299 G A AC005609.1 3'UTR 0.36 TCGA-14-2554-01 6 147631323 147631323 G T STXBP5 Missense_Mutation p.D341Y 0.28 deleterious(0) probably_damaging(0.968) TCGA-14-2554-01 6 25726546 25726546 C T HIST1H2AA Silent p.A70A 0.39 TCGA-14-2554-01 6 31901972 31901972 C T C2 Missense_Mutation p.R249C 0.04 deleterious(0.01) probably_damaging(0.988) TCGA-14-2554-01 6 42976451 42976451 A G PPP2R5D Silent p.Q349Q 0.43 TCGA-14-2554-01 6 44988338 44988338 C T SUPT3H Missense_Mutation p.R84Q 0.43 deleterious(0) probably_damaging(0.998) TCGA-14-2554-01 7 101943880 101943880 G A SH2B2 Missense_Mutation p.V59I 0.14 tolerated(0.42) benign(0.152) TCGA-14-2554-01 7 108524569 108524569 G T C7orf66 Silent p.P7P 0.15 TCGA-14-2554-01 7 150554147 150554147 C T AOC1 Missense_Mutation p.R197C 0.27 deleterious(0) probably_damaging(1) TCGA-14-2554-01 7 40039057 40039057 G A CDK13 Missense_Mutation p.G714S 0.27 deleterious(0) probably_damaging(0.989) TCGA-14-2554-01 7 48685124 48685124 C A ABCA13 3'UTR 0.41 TCGA-14-2554-01 7 53104173 53104173 C T POM121L12 Missense_Mutation p.A270V 0.22 tolerated_low_confidence(0.07) possibly_damaging(0.873) TCGA-14-2554-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.31 deleterious(0) possibly_damaging(0.75) TCGA-14-2554-01 7 99366124 99366124 C T CYP3A4 Missense_Mutation p.V175I 0.25 tolerated(1) benign(0.002) TCGA-14-2554-01 8 105361359 105361359 C T DCSTAMP Silent p.V193V 0.34 TCGA-14-2554-01 8 144801639 144801639 G A MAPK15 Silent p.P236P 0.22 TCGA-14-2554-01 8 7305360 7305360 C A SPAG11B 3'Flank 0.50 TCGA-14-2554-01 9 116122968 116122968 G A BSPRY Missense_Mutation p.R161H 0.45 deleterious(0.02) benign(0.189) TCGA-14-2554-01 9 15000349 15000349 T C RP11-54D18.3 RNA 0.41 TCGA-14-2554-01 9 23701591 23701591 C A ELAVL2 Missense_Mutation p.G167C 0.45 deleterious(0.02) probably_damaging(0.999) TCGA-14-2554-01 9 32784490 32784490 C T TMEM215 Silent p.S103S 0.26 TCGA-14-2554-01 X 122799518 122799518 C T THOC2 Missense_Mutation p.R454H 0.14 deleterious(0) probably_damaging(0.999) TCGA-14-2554-01 X 123215351 123215351 C A STAG2 Missense_Mutation p.T966K 0.25 deleterious(0.01) probably_damaging(0.948) TCGA-14-2554-01 X 123870959 123870959 C A TENM1 Missense_Mutation p.K208N 0.30 tolerated_low_confidence(0.15) benign(0.3) TCGA-14-2554-01 X 153581719 153581719 C T FLNA Silent p.P1989P 0.30 TCGA-14-2554-01 X 154185266 154185266 C A F8 Missense_Mutation p.C573F 0.23 deleterious(0) probably_damaging(1) TCGA-14-2554-01 X 30269312 30269312 G T MAGEB1 Missense_Mutation p.E234D 0.26 deleterious(0.02) benign(0.326) TCGA-14-2554-01 X 3238673 3238673 T C MXRA5 Missense_Mutation p.S1685G 0.27 tolerated(0.37) benign(0.002) TCGA-14-2554-01 X 34150178 34150178 C T FAM47A Missense_Mutation p.R73H 0.30 tolerated(0.6) benign(0.03) TCGA-14-2554-01 X 46387797 46387797 G A ZNF674 Missense_Mutation p.R76W 0.05 tolerated(0.31) benign(0) TCGA-14-2554-01 X 62926262 62926262 G T ARHGEF9 Missense_Mutation p.P86H 0.18 tolerated(0.08) possibly_damaging(0.846) TCGA-14-2554-01 X 91090411 91090411 T G PCDH11X 5'UTR 0.25 TCGA-14-3476-01 11 1270908 1270908 G A MUC5B Silent p.T4266T 0.11 TCGA-14-3476-01 11 36522797 36522797 C A TRAF6 Missense_Mutation p.C90F 0.11 deleterious(0) probably_damaging(0.97) TCGA-14-3476-01 11 47354440 47354440 C T MYBPC3 Missense_Mutation p.V1139I 0.24 tolerated(0.23) benign(0.178) TCGA-14-3476-01 11 48511019 48511019 C A OR4A47 Missense_Mutation p.N225K 0.33 tolerated_low_confidence(0.08) benign(0.151) TCGA-14-3476-01 11 5172692 5172692 C T OR52A1 Missense_Mutation p.R303H 0.24 deleterious(0.02) benign(0.028) TCGA-14-3476-01 11 55861592 55861592 C T OR8I2 Missense_Mutation p.A270V 0.31 deleterious(0.02) possibly_damaging(0.767) TCGA-14-3476-01 11 92532113 92532113 C T FAT3 Silent p.S1978S 0.08 TCGA-14-3476-01 12 10233990 10233990 G T CLEC1A Silent p.S79S 0.36 TCGA-14-3476-01 12 112926900 112926900 C A PTPN11 Missense_Mutation p.T507K 0.03 deleterious(0) probably_damaging(0.996) TCGA-14-3476-01 12 114383718 114383718 C A RBM19 Missense_Mutation p.W514L 0.06 deleterious(0.02) probably_damaging(1) TCGA-14-3476-01 12 11506753 11506753 C A PRB1 Missense_Mutation p.G95V 0.28 deleterious_low_confidence(0) unknown(0) TCGA-14-3476-01 12 124175182 124175182 G A TCTN2 Missense_Mutation p.G332S 0.30 tolerated(0.36) benign(0.062) TCGA-14-3476-01 12 124915195 124915195 G - NCOR2 Frame_Shift_Del p.R341Afs*54 0.30 TCGA-14-3476-01 12 24736581 24736581 C A LINC00477 RNA 0.30 TCGA-14-3476-01 12 58174516 58174516 A G METTL21B 3'UTR 0.08 TCGA-14-3476-01 12 90024361 90024361 T C ATP2B1 Silent p.Q283Q 0.30 TCGA-14-3476-01 13 31713139 31713139 T A HSPH1 Missense_Mutation p.M696L 0.33 deleterious(0.03) benign(0.086) TCGA-14-3476-01 13 52439731 52439731 C T CCDC70 Nonsense_Mutation p.R73* 0.31 TCGA-14-3476-01 14 99641920 99641920 G A BCL11B Missense_Mutation p.P418L 0.12 tolerated(0.06) benign(0.338) TCGA-14-3476-01 15 25427603 25427603 C T SNORD115-6 3'Flank 0.24 TCGA-14-3476-01 15 26828530 26828530 G A GABRB3 Missense_Mutation p.L165F 0.34 deleterious(0) probably_damaging(0.978) TCGA-14-3476-01 15 35274803 35274803 G C ZNF770 Missense_Mutation p.S278C 0.39 deleterious(0.01) possibly_damaging(0.838) TCGA-14-3476-01 15 70957092 70957092 A T UACA Missense_Mutation p.L1341H 0.46 deleterious(0) probably_damaging(0.993) TCGA-14-3476-01 16 28913648 28913648 G A ATP2A1 Missense_Mutation p.R822Q 0.38 deleterious(0) probably_damaging(0.998) TCGA-14-3476-01 17 21206533 21206533 G A MAP2K3 Silent p.S185S 0.14 TCGA-14-3476-01 17 37922611 37922611 C T IKZF3 Missense_Mutation p.R321H 0.36 tolerated(0.13) probably_damaging(0.999) TCGA-14-3476-01 17 9684903 9684903 G A DHRS7C Missense_Mutation p.R55W 0.10 deleterious(0) probably_damaging(0.967) TCGA-14-3476-01 19 11136160 11136160 C T SMARCA4 Silent p.H1048H 0.26 TCGA-14-3476-01 19 46915568 46915568 G A CCDC8 Missense_Mutation p.P167L 0.37 possibly_damaging(0.789) TCGA-14-3476-01 19 55378070 55378070 C A KIR3DL2 Missense_Mutation p.P418T 0.30 deleterious(0.02) benign(0.086) TCGA-14-3476-01 19 55451740 55451740 G A NLRP7 Silent p.D149D 0.03 TCGA-14-3476-01 19 56382210 56382210 T C NLRP4 Missense_Mutation p.L791P 0.06 deleterious(0) probably_damaging(0.996) TCGA-14-3476-01 19 9084743 9084743 G T MUC16 Silent p.R2358R 0.31 TCGA-14-3476-01 1 180053197 180053197 C G CEP350 Missense_Mutation p.L2057V 0.08 probably_damaging(0.979) TCGA-14-3476-01 1 205138447 205138447 G A DSTYK Missense_Mutation p.R390C 0.08 deleterious(0) probably_damaging(0.999) TCGA-14-3476-01 1 216138718 216138718 C T USH2A Missense_Mutation p.R2354H 0.26 benign(0.001) TCGA-14-3476-01 1 22157757 22157757 G A HSPG2 Missense_Mutation p.T3838M 0.28 probably_damaging(0.943) TCGA-14-3476-01 1 222695829 222695829 C T HHIPL2 3'UTR 0.38 TCGA-14-3476-01 1 41289931 41289931 G T KCNQ4 Splice_Site p.X431_splice 0.37 TCGA-14-3476-01 20 62198605 62198605 C A HELZ2 Silent p.R702R 0.09 TCGA-14-3476-01 2 113514622 113514622 G A CKAP2L Missense_Mutation p.S109F 0.03 deleterious(0) probably_damaging(0.971) TCGA-14-3476-01 2 119726837 119726837 G T MARCO Missense_Mutation p.V67F 0.33 deleterious(0) probably_damaging(0.954) TCGA-14-3476-01 2 141143511 141143511 C A LRP1B Silent p.R3494R 0.07 TCGA-14-3476-01 2 171573817 171573817 G A SP5 Missense_Mutation p.R367H 0.09 deleterious(0) possibly_damaging(0.522) TCGA-14-3476-01 2 179613920 179613920 C A TTN Intron 0.25 TCGA-14-3476-01 2 201437781 201437781 T G SGOL2 Missense_Mutation p.N904K 0.39 tolerated(0.17) possibly_damaging(0.477) TCGA-14-3476-01 2 211515146 211515146 C T CPS1 Missense_Mutation p.A1161V 0.34 deleterious(0) probably_damaging(0.999) TCGA-14-3476-01 2 31484555 31484555 C A EHD3 Missense_Mutation p.D352E 0.09 deleterious(0) possibly_damaging(0.615) TCGA-14-3476-01 2 9347326 9347326 G A ASAP2 Silent p.A31A 0.12 TCGA-14-3476-01 3 130325803 130325803 G A COL6A6 Missense_Mutation p.G1561D 0.35 deleterious(0) benign(0.314) TCGA-14-3476-01 3 14513770 14513770 C G SLC6A6 Missense_Mutation p.T385R 0.27 deleterious(0.01) probably_damaging(0.931) TCGA-14-3476-01 3 14799033 14799033 G A C3orf20 Missense_Mutation p.R699H 0.46 tolerated(0.17) benign(0.03) TCGA-14-3476-01 3 148562321 148562321 C A CPB1 Missense_Mutation p.D211E 0.08 deleterious(0.02) probably_damaging(0.964) TCGA-14-3476-01 3 156978862 156978862 A T VEPH1 3'UTR 0.04 TCGA-14-3476-01 3 39156148 39156148 G C TTC21A Missense_Mutation p.G211R 0.06 deleterious(0.04) benign(0.019) TCGA-14-3476-01 3 51976723 51976723 G A PARP3 Silent p.L6L 0.13 TCGA-14-3476-01 3 58520774 58520774 G A ACOX2 Silent p.P20P 0.31 TCGA-14-3476-01 4 110915953 110915953 T C EGF Silent p.S974S 0.06 TCGA-14-3476-01 4 13583896 13583896 C T BOD1L1 Missense_Mutation p.E2853K 0.21 possibly_damaging(0.866) TCGA-14-3476-01 5 140202989 140202989 T A PCDHA5 Silent p.P543P 0.27 TCGA-14-3476-01 5 140810930 140810930 C T PCDHGA12 Missense_Mutation p.R202C 0.08 deleterious_low_confidence(0) probably_damaging(1) TCGA-14-3476-01 5 156476070 156476070 G A HAVCR1 Missense_Mutation p.P254S 0.25 deleterious(0.02) probably_damaging(0.932) TCGA-14-3476-01 5 23522495 23522495 G A PRDM9 Silent p.P197P 0.40 TCGA-14-3476-01 5 45261888 45261888 C T HCN1 3'UTR 0.30 TCGA-14-3476-01 5 60368982 60368982 A G NDUFAF2 Missense_Mutation p.E53G 0.15 deleterious(0) probably_damaging(0.957) TCGA-14-3476-01 6 137482860 137482860 G A IL22RA2 Silent p.G9G 0.38 TCGA-14-3476-01 6 38256182 38256182 G T BTBD9 Silent p.V440V 0.07 TCGA-14-3476-01 6 76744406 76744406 T C IMPG1 Missense_Mutation p.T134A 0.37 deleterious(0) possibly_damaging(0.773) TCGA-14-3476-01 6 87993814 87993814 A T GJB7 3'UTR 0.11 TCGA-14-3476-01 7 100552475 100552475 C T MUC3A Missense_Mutation p.P409L 0.16 deleterious(0) possibly_damaging(0.55) TCGA-14-3476-01 7 102937947 102937947 C A PMPCB Missense_Mutation p.A14E 0.10 tolerated(0.06) unknown(0) TCGA-14-3476-01 7 150171495 150171495 A G GIMAP8 Missense_Mutation p.I360V 0.26 tolerated(0.08) benign(0.036) TCGA-14-3476-01 7 150417944 150417944 C T GIMAP1 Silent p.G284G 0.26 TCGA-14-3476-01 7 150751090 150751090 C T CDK5 3'UTR 0.09 TCGA-14-3476-01 7 21657267 21657267 G A DNAH11 Missense_Mutation p.V1381I 0.15 benign(0.003) TCGA-14-3476-01 7 71275406 71275406 C T CALN1 Silent p.T191T 0.26 TCGA-14-3476-01 8 97296348 97296348 C G PTDSS1 Missense_Mutation p.R95G 0.33 deleterious(0) probably_damaging(0.999) TCGA-14-3476-01 X 153416186 153416186 T C OPN1LW Silent p.S57S 0.62 TCGA-14-3476-01 X 155130194 155130194 G T VAMP7 Missense_Mutation p.V126L 0.38 tolerated(0.84) benign(0.142) TCGA-14-3476-01 X 48935362 48935362 G A WDR45 Missense_Mutation p.R59C 0.93 deleterious(0) benign(0.063) TCGA-14-3476-01 X 9905429 9905429 C T SHROOM2 Silent p.P1281P 0.12 TCGA-14-4157-01 11 55322827 55322827 C G OR4C15 Missense_Mutation p.Q349E 0.38 deleterious_low_confidence(0) benign(0.023) TCGA-14-4157-01 12 133327271 133327272 GA - ANKLE2 Frame_Shift_Del p.P269Cfs*8 0.32 TCGA-14-4157-01 12 52565281 52565281 C T KRT80 Silent p.K420K 0.49 TCGA-14-4157-01 12 59271381 59271381 G A LRIG3 Silent p.N779N 0.47 TCGA-14-4157-01 14 57075891 57075891 A G TMEM260 Missense_Mutation p.H235R 0.44 deleterious(0) benign(0.019) TCGA-14-4157-01 15 42185109 42185109 C T SPTBN5 Missense_Mutation p.A123T 0.35 probably_damaging(0.939) TCGA-14-4157-01 15 44055362 44055362 C T PDIA3 Missense_Mutation p.T187M 0.46 deleterious(0) probably_damaging(0.999) TCGA-14-4157-01 15 84442304 84442304 C T ADAMTSL3 Silent p.D73D 0.40 TCGA-14-4157-01 17 30696410 30696410 A G ZNF207 Missense_Mutation p.M421V 0.39 tolerated_low_confidence(0.24) unknown(0) TCGA-14-4157-01 17 34171636 34171636 G A TAF15 Missense_Mutation p.G445S 0.57 tolerated_low_confidence(0.18) unknown(0) TCGA-14-4157-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.51 tolerated(0.11) benign(0.308) TCGA-14-4157-01 17 7578460 7578460 A C TP53 Missense_Mutation p.V157G 0.48 deleterious(0) probably_damaging(1) TCGA-14-4157-01 19 33697915 33697915 C T LRP3 Missense_Mutation p.R583C 0.53 deleterious(0) possibly_damaging(0.893) TCGA-14-4157-01 19 35940825 35940825 C T FFAR2 Missense_Mutation p.A70V 0.52 tolerated(0.21) possibly_damaging(0.621) TCGA-14-4157-01 19 44351487 44351487 T A ZNF283 Nonsense_Mutation p.L245* 0.59 TCGA-14-4157-01 1 22211272 22211272 C T HSPG2 Missense_Mutation p.V499I 0.41 benign(0.001) TCGA-14-4157-01 1 57535043 57535043 T A DAB1 Missense_Mutation p.N218I 0.39 tolerated(0.08) benign(0.353) TCGA-14-4157-01 1 89575480 89575482 CTC - GBP2 In_Frame_Del p.E513del 0.48 TCGA-14-4157-01 20 62200951 62200951 C T HELZ2 Missense_Mutation p.G213D 0.22 tolerated(0.14) benign(0.034) TCGA-14-4157-01 20 62577191 62577191 A T UCKL1 Nonsense_Mutation p.Y183* 0.42 TCGA-14-4157-01 20 62648082 62648082 G A PRPF6 Missense_Mutation p.E511K 0.39 deleterious(0.04) benign(0.004) TCGA-14-4157-01 22 51237201 51237201 C T RPL23AP82 RNA 0.45 TCGA-14-4157-01 2 103274233 103274233 G C SLC9A2 Missense_Mutation p.G167A 0.08 deleterious(0.01) probably_damaging(1) TCGA-14-4157-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-14-4157-01 2 28635026 28635026 C T FOSL2 Missense_Mutation p.P231L 0.41 tolerated(0.53) benign(0.231) TCGA-14-4157-01 2 43520122 43520122 G A THADA Missense_Mutation p.R1557C 0.09 deleterious(0) probably_damaging(0.995) TCGA-14-4157-01 2 49190747 49190747 C T FSHR Missense_Mutation p.A405T 0.05 deleterious(0) probably_damaging(0.998) TCGA-14-4157-01 2 80085194 80085194 A C CTNNA2 Silent p.V118V 0.35 TCGA-14-4157-01 3 152880606 152880606 A G RAP2B Missense_Mutation p.K42E 0.04 deleterious(0) possibly_damaging(0.87) TCGA-14-4157-01 4 184367366 184367366 A G CDKN2AIP Missense_Mutation p.T177A 0.44 tolerated(0.39) unknown(0) TCGA-14-4157-01 6 29080438 29080438 G A OR2J3 Silent p.P257P 0.47 TCGA-14-4157-01 6 38783392 38783392 T C DNAH8 Missense_Mutation p.V944A 0.52 benign(0) TCGA-14-4157-01 7 75070792 75070792 A T POM121C 5'UTR 0.28 TCGA-14-4157-01 7 98588209 98588209 G A TRRAP Silent p.S3245S 0.29 TCGA-14-4157-01 8 30210581 30210581 T C TUBBP1 RNA 0.42 TCGA-14-4157-01 8 48648093 48648093 T A SPIDR 3'UTR 0.60 TCGA-14-4157-01 8 55537403 55537403 A G RP1 Missense_Mutation p.K321E 0.41 deleterious(0) probably_damaging(0.999) TCGA-14-4157-01 9 27455577 27455577 C A MOB3B 5'UTR 0.05 TCGA-14-4157-01 9 99413984 99413984 A G AAED1 Missense_Mutation p.V91A 0.40 deleterious(0) possibly_damaging(0.79) TCGA-14-4157-01 X 155149532 155149532 T G VAMP7 Intron 0.43 TCGA-14-4157-01 X 76937111 76937111 G - ATRX Frame_Shift_Del p.Q1213Rfs*4 0.51 TCGA-14-4157-01 X 96638984 96638984 C T DIAPH2 Missense_Mutation p.A1029V 0.10 deleterious(0) probably_damaging(0.989) TCGA-15-0742-01 10 27688091 27688091 A T PTCHD3 Missense_Mutation p.M479K 0.79 deleterious(0) possibly_damaging(0.905) TCGA-15-0742-01 11 104915384 104915384 G T CARD16 Missense_Mutation p.D3E 0.44 deleterious(0.03) probably_damaging(0.993) TCGA-15-0742-01 11 69924755 69924755 C T ANO1 Missense_Mutation p.R15C 0.31 tolerated(0.06) benign(0.416) TCGA-15-0742-01 11 7324279 7324279 T C SYT9 Missense_Mutation p.V52A 0.43 deleterious(0) benign(0.427) TCGA-15-0742-01 11 89155085 89155085 G A NOX4 Missense_Mutation p.T205M 0.41 tolerated(1) benign(0.001) TCGA-15-0742-01 11 96117739 96117771 TCACTATCAAGCTCTTCATCACTATCAAATTCT - CCDC82 In_Frame_Del p.E47_S57del 0.09 TCGA-15-0742-01 12 10319338 10319338 T A OLR1 Missense_Mutation p.T133S 0.39 deleterious(0.03) benign(0.031) TCGA-15-0742-01 12 130927141 130927141 G A RIMBP2 Silent p.N235N 0.48 TCGA-15-0742-01 12 132490816 132490816 T G EP400 Missense_Mutation p.L1032R 0.38 unknown(0) TCGA-15-0742-01 12 51457947 51457947 G A CSRNP2 Missense_Mutation p.T405M 0.42 tolerated_low_confidence(0.14) benign(0.208) TCGA-15-0742-01 12 57430106 57430106 G T MYO1A Missense_Mutation p.F778L 0.04 deleterious(0.01) possibly_damaging(0.887) TCGA-15-0742-01 12 68646552 68646552 C T IL22 Missense_Mutation p.G82R 0.38 deleterious(0.03) benign(0.275) TCGA-15-0742-01 12 75444575 75444575 C T KCNC2 Missense_Mutation p.E404K 0.39 deleterious(0) probably_damaging(0.999) TCGA-15-0742-01 14 74969471 74969471 G A LTBP2 Silent p.T1685T 0.46 TCGA-15-0742-01 14 75329549 75329549 G C PROX2 Intron 0.47 TCGA-15-0742-01 15 81282094 81282094 C A MESDC2 Silent p.L13L 0.09 TCGA-15-0742-01 16 12875067 12875067 G A CPPED1 Silent p.C88C 0.53 TCGA-15-0742-01 17 10430055 10430055 G A MYH2 Missense_Mutation p.R1350W 0.40 deleterious(0) probably_damaging(0.973) TCGA-15-0742-01 18 19997860 19997860 G A CTAGE1 5'UTR 0.45 TCGA-15-0742-01 18 50734176 50734176 C G DCC Missense_Mutation p.T617R 0.48 deleterious(0) probably_damaging(0.999) TCGA-15-0742-01 18 7888281 7888281 T A PTPRM Missense_Mutation p.L125Q 0.42 tolerated(0.39) benign(0.012) TCGA-15-0742-01 19 36029512 36029512 C T GAPDHS Nonsense_Mutation p.R126* 0.39 TCGA-15-0742-01 19 55047096 55047096 A T KIR3DX1 Missense_Mutation p.D214V 0.29 deleterious(0.02) probably_damaging(0.991) TCGA-15-0742-01 19 56539808 56539808 C T NLRP5 Missense_Mutation p.R737W 0.44 deleterious(0) probably_damaging(0.993) TCGA-15-0742-01 19 9067947 9067947 G C MUC16 Missense_Mutation p.T6500R 0.44 unknown(0) TCGA-15-0742-01 1 10425498 10425498 G A KIF1B Missense_Mutation p.R1469H 0.44 deleterious(0.01) possibly_damaging(0.584) TCGA-15-0742-01 1 120510196 120510196 C T NOTCH2 Missense_Mutation p.G438D 0.03 deleterious(0) probably_damaging(1) TCGA-15-0742-01 1 26507077 26507077 C T CNKSR1 Silent p.G62G 0.45 TCGA-15-0742-01 1 33772943 33772943 G A A3GALT2 Silent p.R149R 0.53 TCGA-15-0742-01 1 47014901 47014901 C T KNCN Missense_Mutation p.G64R 0.51 tolerated_low_confidence(0.18) benign(0.003) TCGA-15-0742-01 1 59042498 59042498 C T TACSTD2 Missense_Mutation p.E111K 0.30 tolerated(0.43) benign(0.011) TCGA-15-0742-01 1 93698049 93698049 G A CCDC18 Missense_Mutation p.V840I 0.41 tolerated(0.5) benign(0.044) TCGA-15-0742-01 20 2539347 2539347 C T TMC2 Missense_Mutation p.R110W 0.30 deleterious_low_confidence(0) benign(0.288) TCGA-15-0742-01 20 42826177 42826177 C T OSER1 Missense_Mutation p.G132R 0.23 tolerated(0.24) benign(0.017) TCGA-15-0742-01 20 56138743 56138743 C T PCK1 Silent p.C307C 0.28 TCGA-15-0742-01 21 19165724 19165724 T G C21orf91 3'UTR 0.39 TCGA-15-0742-01 21 43327136 43327136 C T C2CD2 Missense_Mutation p.R428H 0.36 deleterious(0.01) probably_damaging(0.98) TCGA-15-0742-01 21 43711761 43711761 C T ABCG1 Silent p.L562L 0.34 TCGA-15-0742-01 21 46320283 46320283 G A ITGB2 Silent p.D283D 0.47 TCGA-15-0742-01 21 46320342 46320342 C A ITGB2 Missense_Mutation p.D264Y 0.34 deleterious(0) probably_damaging(1) TCGA-15-0742-01 22 31523945 31523945 T A INPP5J Missense_Mutation p.F231Y 0.91 deleterious(0) probably_damaging(0.958) TCGA-15-0742-01 22 32239728 32239728 G T DEPDC5 Nonsense_Mutation p.E902* 0.06 TCGA-15-0742-01 2 100916305 100916305 C A LONRF2 Nonsense_Mutation p.E381* 0.51 TCGA-15-0742-01 2 141072536 141072536 T C LRP1B Missense_Mutation p.Q4258R 0.43 benign(0.227) TCGA-15-0742-01 2 141072633 141072633 T C LRP1B Missense_Mutation p.R4226G 0.49 benign(0.152) TCGA-15-0742-01 2 141092130 141092130 T C LRP1B Splice_Site p.X4039_splice 0.42 TCGA-15-0742-01 2 74779634 74779634 C T LOXL3 Missense_Mutation p.R43Q 0.48 tolerated(1) benign(0.011) TCGA-15-0742-01 3 130187963 130187963 A T COL6A5 Missense_Mutation p.H2372L 0.46 deleterious(0.02) benign(0.065) TCGA-15-0742-01 3 146239654 146239654 C T PLSCR1 Missense_Mutation p.C181Y 0.49 deleterious(0) possibly_damaging(0.807) TCGA-15-0742-01 3 164700076 164700076 G A SI Silent p.N1790N 0.40 TCGA-15-0742-01 3 178916851 178916853 GAA - PIK3CA In_Frame_Del p.E81del 0.46 TCGA-15-0742-01 3 190147491 190147491 C G TMEM207 Missense_Mutation p.G112R 0.50 tolerated(0.26) benign(0.399) TCGA-15-0742-01 3 27233555 27233555 C T NEK10 Missense_Mutation p.V824I 0.54 tolerated(0.32) benign(0.007) TCGA-15-0742-01 3 38951639 38951639 G A SCN11A Missense_Mutation p.T340M 0.43 deleterious(0) probably_damaging(1) TCGA-15-0742-01 3 439999 439999 C T CHL1 Missense_Mutation p.R1062C 0.38 deleterious(0.02) probably_damaging(0.91) TCGA-15-0742-01 4 77305567 77305567 G A CCDC158 Nonsense_Mutation p.R134* 0.39 TCGA-15-0742-01 5 101834676 101834676 G A SLCO6A1 5'UTR 0.50 TCGA-15-0742-01 5 122281829 122281829 G A SNX24 Missense_Mutation p.R75Q 0.42 deleterious(0) probably_damaging(0.998) TCGA-15-0742-01 5 151170550 151170550 A G G3BP1 Missense_Mutation p.Q93R 0.40 deleterious(0.03) benign(0.008) TCGA-15-0742-01 5 41051102 41051102 G T MROH2B Missense_Mutation p.P441T 0.51 tolerated(0.88) benign(0.033) TCGA-15-0742-01 6 155776184 155776184 G A NOX3 Missense_Mutation p.T43I 0.80 tolerated(0.06) probably_damaging(0.999) TCGA-15-0742-01 6 30671524 30671524 C G MDC1 Missense_Mutation p.K1812N 0.45 deleterious(0) probably_damaging(0.991) TCGA-15-0742-01 6 33289744 33289744 C T DAXX 5'UTR 0.50 TCGA-15-0742-01 6 56918065 56918065 A C KIAA1586 Missense_Mutation p.L256F 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-15-0742-01 6 73904449 73904449 C T KCNQ5 Missense_Mutation p.A723V 0.75 deleterious(0.02) benign(0.185) TCGA-15-0742-01 6 76751736 76751736 G A IMPG1 Nonsense_Mutation p.R59* 0.85 TCGA-15-0742-01 7 107434196 107434196 C T SLC26A3 Missense_Mutation p.V88I 0.27 tolerated(0.14) possibly_damaging(0.678) TCGA-15-0742-01 7 123595133 123595133 G A SPAM1 Missense_Mutation p.R346Q 0.31 tolerated(1) benign(0.03) TCGA-15-0742-01 7 138310791 138310791 C T SVOPL Missense_Mutation p.G396S 0.17 tolerated(0.26) probably_damaging(0.99) TCGA-15-0742-01 7 144060265 144060265 A G ARHGEF5 Missense_Mutation p.E168G 0.12 tolerated(0.2) benign(0.006) TCGA-15-0742-01 7 55238894 55238894 G A EGFR Missense_Mutation p.C636Y 0.95 deleterious(0.01) probably_damaging(0.951) TCGA-15-0742-01 7 72419558 72419558 G A POM121 3'UTR 0.26 TCGA-15-0742-01 7 75442963 75442963 G A CCL24 Missense_Mutation p.T24M 0.33 deleterious(0.03) possibly_damaging(0.738) TCGA-15-0742-01 7 81331979 81331979 C T HGF Missense_Mutation p.R702H 0.30 tolerated(0.07) probably_damaging(0.999) TCGA-15-0742-01 7 88963595 88963595 C A ZNF804B Silent p.T433T 0.28 TCGA-15-0742-01 7 94055328 94055328 G C COL1A2 Missense_Mutation p.G988R 0.03 unknown(0) TCGA-15-0742-01 8 105001550 105001550 G A RIMS2 Missense_Mutation p.G982E 0.32 tolerated_low_confidence(0.28) benign(0.373) TCGA-15-0742-01 8 114290824 114290824 C T CSMD3 Missense_Mutation p.E171K 0.53 tolerated(0.38) benign(0.03) TCGA-15-0742-01 8 7698622 7698622 G A DEFB104A Missense_Mutation p.R42H 0.15 tolerated(0.12) benign(0.039) TCGA-15-0742-01 9 136230519 136230519 G A SURF4 Silent p.N220N 0.81 TCGA-15-0742-01 9 138415760 138415760 G A LCN1 Silent p.S109S 0.07 TCGA-15-0742-01 9 21166247 21166247 C G IFNA21 Missense_Mutation p.C122S 0.92 deleterious(0) probably_damaging(1) TCGA-15-0742-01 9 91616623 91616623 G A S1PR3 Missense_Mutation p.A170T 0.51 tolerated(0.09) probably_damaging(0.916) TCGA-15-0742-01 X 122460032 122460032 G A GRIA3 Missense_Mutation p.E222K 0.93 tolerated(0.05) probably_damaging(0.999) TCGA-15-0742-01 X 30269614 30269614 G A MAGEB1 Missense_Mutation p.R335H 0.89 tolerated(0.29) unknown(0) TCGA-16-0846-01 10 121668628 121668628 A G SEC23IP Missense_Mutation p.M393V 0.76 tolerated(0.08) benign(0.045) TCGA-16-0846-01 10 76970926 76970926 C T VDAC2 5'UTR 0.88 TCGA-16-0846-01 10 89690846 89690846 G T PTEN Missense_Mutation p.V85F 0.61 deleterious(0.01) probably_damaging(0.927) TCGA-16-0846-01 11 19961278 19961278 A G NAV2 Missense_Mutation p.H725R 0.16 tolerated(0.69) benign(0.105) TCGA-16-0846-01 11 2186970 2186970 G A TH Silent p.F407F 0.13 TCGA-16-0846-01 11 4967921 4967921 A G OR51A4 Missense_Mutation p.I137T 0.31 deleterious(0.01) benign(0.261) TCGA-16-0846-01 11 55655591 55655591 C A TRIM51 Missense_Mutation p.H197Q 0.18 deleterious(0.01) benign(0.04) TCGA-16-0846-01 11 57381870 57381870 C T SERPING1 Missense_Mutation p.A440V 0.13 deleterious(0.04) benign(0.188) TCGA-16-0846-01 12 114804065 114804065 C A TBX5 Missense_Mutation p.G296V 0.38 deleterious(0.01) probably_damaging(0.952) TCGA-16-0846-01 12 132547129 132547129 G A EP400 Silent p.Q2739Q 0.17 TCGA-16-0846-01 12 51696870 51696870 C T BIN2 Splice_Site p.X73_splice 0.33 TCGA-16-0846-01 12 55759400 55759400 C G OR6C75 Missense_Mutation p.S169C 0.29 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-16-0846-01 12 65640192 65640192 T C LEMD3 3'UTR 0.11 TCGA-16-0846-01 12 95604181 95604181 T C FGD6 Silent p.S293S 0.39 TCGA-16-0846-01 13 51825705 51825705 G A FAM124A Missense_Mutation p.V104I 0.26 tolerated(0.11) possibly_damaging(0.897) TCGA-16-0846-01 14 24659547 24659547 G C TM9SF1 Intron 0.45 TCGA-16-0846-01 14 38061904 38061904 C T FOXA1 Missense_Mutation p.V29I 0.35 tolerated(0.09) benign(0.233) TCGA-16-0846-01 14 50081252 50081252 A G LRR1 3'UTR 0.34 TCGA-16-0846-01 15 54556392 54556392 G A UNC13C Missense_Mutation p.G1159S 0.60 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-16-0846-01 15 85448820 85448820 A T SLC28A1 Silent p.G218G 0.11 TCGA-16-0846-01 16 27357926 27357926 A T IL4R Missense_Mutation p.N167I 0.32 tolerated(0.07) benign(0.01) TCGA-16-0846-01 16 58030933 58030933 C T ZNF319 Missense_Mutation p.E413K 0.40 tolerated(0.23) probably_damaging(0.991) TCGA-16-0846-01 16 70917863 70917863 G A HYDIN Silent p.A3313A 0.15 TCGA-16-0846-01 17 12656063 12656063 G A MYOCD Silent p.P486P 0.53 TCGA-16-0846-01 17 4449142 4449142 G C MYBBP1A Missense_Mutation p.I640M 0.68 tolerated(0.14) possibly_damaging(0.578) TCGA-16-0846-01 17 48940254 48940254 C A TOB1 3'UTR 0.33 TCGA-16-0846-01 17 7578395 7578395 G A TP53 Missense_Mutation p.H179Y 0.57 deleterious(0) probably_damaging(1) TCGA-16-0846-01 18 19395686 19395686 G A MIB1 Missense_Mutation p.R530Q 0.10 tolerated(0.11) benign(0.06) TCGA-16-0846-01 18 61377523 61377523 G A SERPINB11 Silent p.S32S 0.17 TCGA-16-0846-01 18 7231554 7231554 C T LRRC30 Nonsense_Mutation p.R140* 0.25 TCGA-16-0846-01 18 76753193 76753193 C T SALL3 Missense_Mutation p.P401L 0.48 tolerated(0.36) benign(0.252) TCGA-16-0846-01 19 10334822 10334822 G A S1PR2 Missense_Mutation p.L254F 0.10 deleterious(0) probably_damaging(0.997) TCGA-16-0846-01 19 10794068 10794068 A G ILF3 Silent p.Q571Q 0.39 TCGA-16-0846-01 19 12490985 12490985 T - CTD-3105H18.14 3'UTR 0.19 TCGA-16-0846-01 19 15905136 15905136 C T OR10H5 Missense_Mutation p.A93V 0.18 deleterious(0) benign(0.009) TCGA-16-0846-01 19 17312748 17312748 G A MYO9B Missense_Mutation p.R1526H 0.17 tolerated(0.08) possibly_damaging(0.72) TCGA-16-0846-01 19 18280016 18280016 C T PIK3R2 Missense_Mutation p.S700L 0.38 deleterious(0) probably_damaging(0.995) TCGA-16-0846-01 19 31769684 31769685 - T TSHZ3 Frame_Shift_Ins p.G339Rfs*26 0.15 TCGA-16-0846-01 19 33706697 33706697 C T SLC7A10 Missense_Mutation p.E112K 0.33 deleterious(0) possibly_damaging(0.472) TCGA-16-0846-01 19 50979619 50979619 G A FAM71E1 Silent p.L9L 0.07 TCGA-16-0846-01 19 54177499 54177499 C T MIR498 RNA 0.45 TCGA-16-0846-01 19 58265771 58265771 G T ZNF776 Missense_Mutation p.V425F 0.06 deleterious(0) probably_damaging(0.972) TCGA-16-0846-01 1 142713182 142713182 T A RP11-417J8.6 RNA 0.18 TCGA-16-0846-01 1 155629971 155629971 A T YY1AP1 Missense_Mutation p.V715D 0.36 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-16-0846-01 1 161987297 161987297 G A OLFML2B Missense_Mutation p.L147F 0.33 deleterious(0.04) probably_damaging(0.96) TCGA-16-0846-01 1 209797264 209797264 G A LAMB3 Silent p.D686D 0.08 TCGA-16-0846-01 1 31905860 31905860 G A SERINC2 Missense_Mutation p.E363K 0.43 tolerated(0.26) probably_damaging(0.977) TCGA-16-0846-01 1 40432533 40432533 C T MFSD2A Missense_Mutation p.R299W 0.25 tolerated(0.21) benign(0.075) TCGA-16-0846-01 1 55078368 55078368 G T FAM151A Silent p.V197V 0.41 TCGA-16-0846-01 1 62190705 62190705 T A TM2D1 Missense_Mutation p.T92S 0.31 tolerated(0.12) benign(0.013) TCGA-16-0846-01 1 85392293 85392298 GTCCAA - MCOLN2 3'UTR 0.47 TCGA-16-0846-01 20 13830942 13830942 C A SEL1L2 Missense_Mutation p.L501F 0.10 tolerated_low_confidence(0.36) benign(0.242) TCGA-16-0846-01 20 56190589 56190589 G A ZBP1 Missense_Mutation p.P103S 0.29 tolerated(0.38) probably_damaging(0.968) TCGA-16-0846-01 20 62172943 62172943 G A SRMS Missense_Mutation p.P326L 0.24 tolerated(0.92) benign(0.002) TCGA-16-0846-01 22 37578306 37578306 G A C1QTNF6 Silent p.R253R 0.43 TCGA-16-0846-01 22 38046222 38046222 G A SH3BP1 Silent p.A460A 0.37 TCGA-16-0846-01 22 45754668 45754668 G A SMC1B Missense_Mutation p.T957I 0.38 deleterious(0.04) benign(0.361) TCGA-16-0846-01 2 128370138 128370138 C T MYO7B Missense_Mutation p.H1094Y 0.19 deleterious(0) possibly_damaging(0.717) TCGA-16-0846-01 2 167056246 167056246 A T SCN9A Missense_Mutation p.F1624I 0.53 deleterious(0) probably_damaging(0.988) TCGA-16-0846-01 2 177017342 177017342 C T HOXD4 Missense_Mutation p.P147L 0.23 deleterious(0) benign(0.313) TCGA-16-0846-01 2 189858803 189858803 G A COL3A1 Missense_Mutation p.E397K 0.51 unknown(0) TCGA-16-0846-01 2 219689035 219689035 C T PRKAG3 Silent p.L421L 0.49 TCGA-16-0846-01 2 60688453 60688453 C T BCL11A Missense_Mutation p.A532T 0.11 tolerated(0.59) possibly_damaging(0.499) TCGA-16-0846-01 3 1189678 1189678 C A CNTN6 5'UTR 0.07 TCGA-16-0846-01 3 6903256 6903256 G T GRM7 Missense_Mutation p.G61C 0.28 deleterious(0) probably_damaging(1) TCGA-16-0846-01 4 15835885 15835885 A G CD38 Missense_Mutation p.N182S 0.04 tolerated(0.49) benign(0.01) TCGA-16-0846-01 4 174219326 174219326 C T GALNT7 Silent p.P342P 0.52 TCGA-16-0846-01 4 178911808 178911808 A T LINC01098 3'UTR 0.61 TCGA-16-0846-01 5 101572516 101572516 T C SLCO4C1 3'UTR 0.33 TCGA-16-0846-01 5 148427540 148427540 G C SH3TC2 Missense_Mutation p.S55C 0.42 tolerated(0.13) possibly_damaging(0.67) TCGA-16-0846-01 5 39316092 39316092 C G C9 Missense_Mutation p.E219Q 0.23 deleterious(0.04) benign(0.077) TCGA-16-0846-01 5 41061824 41061824 G T MROH2B Missense_Mutation p.L155I 0.42 deleterious(0.01) possibly_damaging(0.881) TCGA-16-0846-01 5 89802453 89802453 G A POLR3G Missense_Mutation p.A183T 0.39 tolerated(0.65) unknown(0) TCGA-16-0846-01 6 24563628 24563628 C T KIAA0319 Silent p.S850S 0.56 TCGA-16-0846-01 7 100377161 100377161 G A ZAN Silent p.A2136A 0.32 TCGA-16-0846-01 7 100674926 100674926 G A MUC17 Missense_Mutation p.V77M 0.19 benign(0.009) TCGA-16-0846-01 7 103124180 103124180 G A RELN Silent p.N3367N 0.10 TCGA-16-0846-01 7 105111170 105111170 A C PUS7 Missense_Mutation p.Y455D 0.26 tolerated(0.18) benign(0.243) TCGA-16-0846-01 7 129945681 129945681 G A CPA4 Missense_Mutation p.R171Q 0.21 deleterious(0.02) benign(0.161) TCGA-16-0846-01 7 142498870 142498870 G A TRBC2 Silent p.G49G 0.11 TCGA-16-0846-01 7 150217096 150217096 G A GIMAP7 Missense_Mutation p.V12I 0.29 tolerated(0.1) possibly_damaging(0.684) TCGA-16-0846-01 7 29160576 29160576 T C CPVL Silent p.P34P 0.34 TCGA-16-0846-01 7 4213951 4213951 C T SDK1 Missense_Mutation p.T1633M 0.03 tolerated(0.11) benign(0.017) TCGA-16-0846-01 7 44148536 44148536 G A AEBP1 Missense_Mutation p.D327N 0.35 tolerated_low_confidence(0.05) benign(0.005) TCGA-16-0846-01 7 64004099 64004099 A G ZNF680 Missense_Mutation p.V80A 0.22 tolerated(0.08) benign(0.089) TCGA-16-0846-01 8 144801307 144801307 G T MAPK15 Missense_Mutation p.V188L 0.58 deleterious(0.02) possibly_damaging(0.863) TCGA-16-0846-01 8 28627526 28627526 G T INTS9 Silent p.A560A 0.48 TCGA-16-0846-01 8 48772255 48772255 G A PRKDC Nonsense_Mutation p.Q2041* 0.23 TCGA-16-0846-01 8 55540932 55540932 A T RP1 Missense_Mutation p.E1497V 0.46 tolerated(0.06) possibly_damaging(0.632) TCGA-16-0846-01 8 72973980 72973980 G A TRPA1 Missense_Mutation p.A275V 0.25 deleterious(0.05) possibly_damaging(0.903) TCGA-16-0846-01 9 100433448 100433448 C T NCBP1 Silent p.A780A 0.04 TCGA-16-0846-01 X 151124002 151124002 G T GABRE Silent p.T325T 0.69 TCGA-16-0846-01 X 32429932 32429932 G C DMD Missense_Mutation p.D1390E 0.79 possibly_damaging(0.893) TCGA-16-0846-01 X 91133526 91133526 T A PCDH11X Missense_Mutation p.F763I 0.73 tolerated(0.16) possibly_damaging(0.698) TCGA-16-0846-01 Y 15016783 15016783 T A DDX3Y 5'UTR 0.80 TCGA-16-0848-01 10 101731746 101731746 C T DNMBP Missense_Mutation p.D46N 0.73 deleterious(0.03) probably_damaging(0.969) TCGA-16-0848-01 10 115349287 115349287 C T HABP2 3'UTR 0.72 TCGA-16-0848-01 10 116045892 116045892 G C VWA2 Missense_Mutation p.G398R 0.59 deleterious(0.02) probably_damaging(1) TCGA-16-0848-01 10 127462429 127462429 G A MMP21 Missense_Mutation p.A223V 0.68 tolerated(0.2) benign(0.109) TCGA-16-0848-01 10 127730647 127730647 C T ADAM12 Intron 0.64 TCGA-16-0848-01 10 134910594 134910594 C T GPR123 Silent p.I40I 0.12 TCGA-16-0848-01 10 15647722 15647722 C T ITGA8 Splice_Site p.X657_splice 0.61 TCGA-16-0848-01 10 64572929 64572929 G A EGR2 3'UTR 0.62 TCGA-16-0848-01 10 75394300 75394300 C T MYOZ1 Silent p.A148A 0.71 TCGA-16-0848-01 10 89692911 89692911 G A PTEN Missense_Mutation p.G132D 0.60 deleterious(0.03) probably_damaging(0.96) TCGA-16-0848-01 10 95276698 95276698 T G CEP55 Missense_Mutation p.L229R 0.70 deleterious(0) probably_damaging(0.973) TCGA-16-0848-01 10 98064396 98064396 C T DNTT Missense_Mutation p.R48C 0.49 deleterious(0) probably_damaging(1) TCGA-16-0848-01 11 118007674 118007674 C T SCN4B 3'UTR 0.35 TCGA-16-0848-01 11 128840352 128840352 C T ARHGAP32 Missense_Mutation p.E1572K 0.42 deleterious(0.01) probably_damaging(0.991) TCGA-16-0848-01 11 129993548 129993548 G A APLP2 Missense_Mutation p.V322M 0.11 tolerated(0.79) benign(0.096) TCGA-16-0848-01 11 133800914 133800914 G A IGSF9B Missense_Mutation p.T495M 0.38 deleterious(0.02) possibly_damaging(0.901) TCGA-16-0848-01 11 17409305 17409305 T G KCNJ11 Missense_Mutation p.T112P 0.20 tolerated(0.09) probably_damaging(0.995) TCGA-16-0848-01 11 18194938 18194938 C T MRGPRX4 Silent p.N45N 0.29 TCGA-16-0848-01 11 19955641 19955641 G A NAV2 Silent p.A640A 0.10 TCGA-16-0848-01 11 26725395 26725395 C T SLC5A12 Missense_Mutation p.G209R 0.30 deleterious(0) probably_damaging(1) TCGA-16-0848-01 11 379657 379657 G A B4GALNT4 Missense_Mutation p.R815H 0.29 tolerated(0.25) unknown(0) TCGA-16-0848-01 11 47311781 47311781 G A MADD Missense_Mutation p.A1029T 0.06 tolerated(0.39) possibly_damaging(0.887) TCGA-16-0848-01 11 552227 552227 C T LRRC56 Silent p.G392G 0.10 TCGA-16-0848-01 11 608060 608060 G A PHRF1 Silent p.P867P 0.14 TCGA-16-0848-01 11 61495744 61495744 C T DAGLA Silent p.N252N 0.42 TCGA-16-0848-01 11 62342900 62342900 G A TUT1 Missense_Mutation p.A802V 0.39 tolerated(0.88) benign(0.001) TCGA-16-0848-01 11 62437616 62437616 G A C11orf48 5'UTR 0.21 TCGA-16-0848-01 11 66108269 66108269 G A BRMS1 Missense_Mutation p.R171C 0.37 deleterious(0.01) probably_damaging(0.999) TCGA-16-0848-01 11 6661711 6661711 G A DCHS1 Silent p.A378A 0.50 TCGA-16-0848-01 11 67191965 67191965 G A CARNS1 Missense_Mutation p.G916R 0.43 deleterious(0) probably_damaging(0.973) TCGA-16-0848-01 11 67262398 67262398 C T PITPNM1 Silent p.A887A 0.35 TCGA-16-0848-01 11 68700805 68700805 G A IGHMBP2 Missense_Mutation p.R425H 0.42 deleterious(0.01) probably_damaging(0.928) TCGA-16-0848-01 11 70031726 70031726 G A ANO1 Silent p.S873S 0.33 TCGA-16-0848-01 11 7335029 7335029 C T SYT9 Missense_Mutation p.R301W 0.04 deleterious(0) probably_damaging(1) TCGA-16-0848-01 11 7674354 7674354 A G PPFIBP2 Missense_Mutation p.S846G 0.10 tolerated(0.47) benign(0) TCGA-16-0848-01 11 86055878 86055878 G A C11orf73 Intron 0.46 TCGA-16-0848-01 11 8732753 8732753 C T ST5 Missense_Mutation p.R733Q 0.27 deleterious(0.01) probably_damaging(0.999) TCGA-16-0848-01 11 88911861 88911861 G A TYR Missense_Mutation p.C247Y 0.09 deleterious(0) probably_damaging(1) TCGA-16-0848-01 11 93778986 93778986 C T HEPHL1 Silent p.A106A 0.31 TCGA-16-0848-01 11 94192626 94192626 C T MRE11A Missense_Mutation p.R483Q 0.34 tolerated(0.13) benign(0.011) TCGA-16-0848-01 12 102008305 102008305 G A MYBPC1 Silent p.P19P 0.15 TCGA-16-0848-01 12 104341610 104341610 T A HSP90B1 3'UTR 0.23 TCGA-16-0848-01 12 108589918 108589918 G T WSCD2 Missense_Mutation p.K103N 0.09 tolerated(0.31) benign(0.287) TCGA-16-0848-01 12 109972271 109972271 G A UBE3B Intron 0.32 TCGA-16-0848-01 12 110426861 110426861 C T GIT2 Silent p.A104A 0.30 TCGA-16-0848-01 12 110782701 110782701 C T ATP2A2 Silent p.G844G 0.06 TCGA-16-0848-01 12 111072571 111072571 C T TCTN1 Missense_Mutation p.P270L 0.12 tolerated(0.57) benign(0.36) TCGA-16-0848-01 12 113830771 113830771 C T SDS Missense_Mutation p.G321D 0.11 deleterious(0.01) possibly_damaging(0.463) TCGA-16-0848-01 12 117962776 117962776 G A KSR2 Silent p.N700N 0.08 TCGA-16-0848-01 12 122107310 122107310 C T MORN3 Missense_Mutation p.R27Q 0.43 tolerated(0.06) possibly_damaging(0.646) TCGA-16-0848-01 12 123097775 123097775 G T KNTC1 Silent p.V1913V 0.12 TCGA-16-0848-01 12 12618588 12618588 C T LOH12CR1 Missense_Mutation p.R157C 0.29 deleterious(0) probably_damaging(0.971) TCGA-16-0848-01 12 132490787 132490787 G A EP400 Silent p.A1022A 0.32 TCGA-16-0848-01 12 133502193 133502193 G A ZNF605 Silent p.S595S 0.13 TCGA-16-0848-01 12 13761695 13761695 C T GRIN2B Missense_Mutation p.V618I 0.15 deleterious(0.02) benign(0.023) TCGA-16-0848-01 12 21377737 21377737 G A SLCO1B1 Missense_Mutation p.R610H 0.19 deleterious(0.03) benign(0.149) TCGA-16-0848-01 12 247457 247457 G A IQSEC3 Missense_Mutation p.G310S 0.10 deleterious(0) probably_damaging(0.999) TCGA-16-0848-01 12 3131079 3131079 G A TEAD4 Missense_Mutation p.V265M 0.47 deleterious(0) possibly_damaging(0.682) TCGA-16-0848-01 12 32136260 32136260 G A KIAA1551 Missense_Mutation p.V791I 0.39 tolerated(0.1) possibly_damaging(0.584) TCGA-16-0848-01 12 43777680 43777680 C T ADAMTS20 Missense_Mutation p.R1518Q 0.38 tolerated(0.09) benign(0.064) TCGA-16-0848-01 12 45796989 45796989 C T ANO6 Missense_Mutation p.P604S 0.08 tolerated(0.17) benign(0.367) TCGA-16-0848-01 12 48104614 48104614 C T ENDOU Missense_Mutation p.A402T 0.39 deleterious(0.03) probably_damaging(0.998) TCGA-16-0848-01 12 49953240 49953240 C T MCRS1 Missense_Mutation p.R374H 0.35 tolerated(0.07) possibly_damaging(0.828) TCGA-16-0848-01 12 53676084 53676084 C T ESPL1 Missense_Mutation p.R886W 0.06 deleterious(0) possibly_damaging(0.696) TCGA-16-0848-01 12 53876872 53876872 C T MAP3K12 Missense_Mutation p.R572Q 0.11 deleterious(0.01) probably_damaging(0.922) TCGA-16-0848-01 12 57910481 57910481 G A DDIT3 3'UTR 0.07 TCGA-16-0848-01 12 662824 662824 C T B4GALNT3 Missense_Mutation p.R579W 0.38 deleterious(0) benign(0.394) TCGA-16-0848-01 12 66765580 66765580 C T GRIP1 Missense_Mutation p.R917Q 0.08 tolerated(0.34) benign(0.313) TCGA-16-0848-01 12 69264029 69264029 G A CPM Silent p.L194L 0.05 TCGA-16-0848-01 12 93793212 93793212 C T NUDT4 3'UTR 0.15 TCGA-16-0848-01 12 96059655 96059655 G A NTN4 Nonsense_Mutation p.R561* 0.38 TCGA-16-0848-01 12 99080554 99080554 G A APAF1 Missense_Mutation p.R736Q 0.33 tolerated(0.39) possibly_damaging(0.759) TCGA-16-0848-01 13 103515410 103515410 C T BIVM-ERCC5 Silent p.A1063A 0.34 TCGA-16-0848-01 13 108518243 108518243 C T FAM155A Silent p.L234L 0.04 TCGA-16-0848-01 13 111134960 111134960 C T COL4A2 Silent p.F952F 0.41 TCGA-16-0848-01 13 76374870 76374870 C T LMO7 5'UTR 0.43 TCGA-16-0848-01 14 100995529 100995529 G A WDR25 Missense_Mutation p.R466H 0.09 deleterious(0) probably_damaging(0.996) TCGA-16-0848-01 14 105927197 105927197 C T MTA1 Silent p.D283D 0.51 TCGA-16-0848-01 14 105995475 105995475 C T TMEM121 Missense_Mutation p.R102C 0.22 deleterious(0) possibly_damaging(0.736) TCGA-16-0848-01 14 106173865 106173865 C T IGHA1 Silent p.P234P 0.10 TCGA-16-0848-01 14 20824510 20824510 C T PARP2 Silent p.S395S 0.06 TCGA-16-0848-01 14 23862237 23862237 C A MYH6 Missense_Mutation p.K1045N 0.09 deleterious(0) probably_damaging(0.999) TCGA-16-0848-01 14 23883019 23883019 G A MYH7 Silent p.A1913A 0.15 TCGA-16-0848-01 14 57271049 57271049 G A OTX2 Missense_Mutation p.R44W 0.44 deleterious(0) probably_damaging(0.997) TCGA-16-0848-01 14 62550996 62550996 C T SYT16 Missense_Mutation p.A506V 0.29 tolerated(1) benign(0.001) TCGA-16-0848-01 14 69925240 69925240 G A SLC39A9 Missense_Mutation p.R285H 0.21 tolerated(0.52) possibly_damaging(0.738) TCGA-16-0848-01 14 75139548 75139548 C T AREL1 Missense_Mutation p.A470T 0.29 tolerated(0.32) benign(0.001) TCGA-16-0848-01 14 75140794 75140794 G C AREL1 Missense_Mutation p.F367L 0.31 tolerated(0.1) possibly_damaging(0.501) TCGA-16-0848-01 14 75375610 75375610 C T RPS6KL1 Silent p.T462T 0.41 TCGA-16-0848-01 14 76948978 76948978 G A ESRRB Silent p.P221P 0.32 TCGA-16-0848-01 14 88945793 88945793 G A PTPN21 Missense_Mutation p.A661V 0.09 tolerated_low_confidence(0.06) possibly_damaging(0.747) TCGA-16-0848-01 14 94139700 94139700 C T UNC79 Nonsense_Mutation p.R2076* 0.30 TCGA-16-0848-01 14 94718121 94718121 C T PPP4R4 Nonsense_Mutation p.R585* 0.28 TCGA-16-0848-01 14 96730216 96730216 G A BDKRB1 Missense_Mutation p.R66Q 0.40 tolerated(0.13) possibly_damaging(0.459) TCGA-16-0848-01 15 27160003 27160003 C T GABRA5 Missense_Mutation p.A184V 0.05 tolerated(0.33) possibly_damaging(0.474) TCGA-16-0848-01 15 28459388 28459388 G A HERC2 Missense_Mutation p.P2130L 0.27 probably_damaging(0.944) TCGA-16-0848-01 15 28501354 28501354 G A HERC2 Missense_Mutation p.A876V 0.48 benign(0.044) TCGA-16-0848-01 15 33149264 33149264 C G FMN1 Missense_Mutation p.E1071Q 0.42 tolerated(0.06) possibly_damaging(0.754) TCGA-16-0848-01 15 35086902 35086902 G A ACTC1 Silent p.I36I 0.07 TCGA-16-0848-01 15 58938351 58938351 C T ADAM10 Missense_Mutation p.R213H 0.12 deleterious(0) benign(0.356) TCGA-16-0848-01 15 65256015 65256015 G A SPG21 Silent p.A291A 0.33 TCGA-16-0848-01 15 66607521 66607521 C T DIS3L Missense_Mutation p.S321L 0.42 tolerated(0.3) benign(0.001) TCGA-16-0848-01 15 68937660 68937660 C T CORO2B Silent p.S59S 0.37 TCGA-16-0848-01 15 69696250 69696250 G A PAQR5 3'UTR 0.34 TCGA-16-0848-01 15 82575337 82575337 C T FAM154B Silent p.F377F 0.47 TCGA-16-0848-01 15 86123370 86123370 G A AKAP13 Missense_Mutation p.E691K 0.42 tolerated_low_confidence(0.14) benign(0.003) TCGA-16-0848-01 15 92706023 92706023 C T SLCO3A1 Silent p.I597I 0.33 TCGA-16-0848-01 16 112562 112562 G A RHBDF1 Silent p.S309S 0.08 TCGA-16-0848-01 16 19184014 19184015 TG - SYT17 Intron 0.13 TCGA-16-0848-01 16 2143020 2143020 G A PKD1 Silent p.H3697H 0.14 TCGA-16-0848-01 16 2236819 2236819 C T CASKIN1 Missense_Mutation p.E313K 0.33 probably_damaging(0.992) TCGA-16-0848-01 16 2436204 2436204 G A ABCA17P RNA 0.14 TCGA-16-0848-01 16 2817797 2817797 G A SRRM2 Missense_Mutation p.R2423Q 0.49 probably_damaging(0.959) TCGA-16-0848-01 16 2834834 2834834 C T PRSS33 Intron 0.19 TCGA-16-0848-01 16 30777535 30777535 C T RNF40 Missense_Mutation p.R349C 0.18 deleterious(0) probably_damaging(0.983) TCGA-16-0848-01 16 31049910 31049910 G A STX4 Missense_Mutation p.R215H 0.10 tolerated(0.05) probably_damaging(0.991) TCGA-16-0848-01 16 3306393 3306393 G A MEFV Silent p.Y65Y 0.10 TCGA-16-0848-01 16 333338 333338 C T PDIA2 Missense_Mutation p.R57W 0.36 deleterious(0.01) possibly_damaging(0.901) TCGA-16-0848-01 16 4242010 4242010 G A SRL 3'UTR 0.48 TCGA-16-0848-01 16 5046881 5046881 G A SEC14L5 Missense_Mutation p.R269Q 0.38 deleterious(0.02) probably_damaging(0.999) TCGA-16-0848-01 16 55363084 55363084 C T IRX6 Silent p.S398S 0.07 TCGA-16-0848-01 16 57238803 57238803 G A RSPRY1 Missense_Mutation p.R78Q 0.11 tolerated(0.14) benign(0.06) TCGA-16-0848-01 16 57785568 57785568 G A KATNB1 Missense_Mutation p.V150M 0.05 deleterious(0) possibly_damaging(0.906) TCGA-16-0848-01 16 58078990 58078990 G T MMP15 Missense_Mutation p.K550N 0.38 deleterious(0) benign(0.343) TCGA-16-0848-01 16 58620613 58620613 C T CNOT1 Missense_Mutation p.R158H 0.07 tolerated(0.06) possibly_damaging(0.773) TCGA-16-0848-01 16 66437045 66437045 G A CDH5 Silent p.S776S 0.28 TCGA-16-0848-01 16 67183249 67183249 G A B3GNT9 Silent p.H380H 0.38 TCGA-16-0848-01 16 67765469 67765469 G A RANBP10 Silent p.L265L 0.13 TCGA-16-0848-01 16 67876927 67876927 T C THAP11 Missense_Mutation p.L157P 0.38 deleterious_low_confidence(0.01) unknown(0) TCGA-16-0848-01 16 84067037 84067037 C T SLC38A8 Silent p.P142P 0.38 TCGA-16-0848-01 16 85667700 85667700 C T GSE1 Missense_Mutation p.A63V 0.42 deleterious(0) unknown(0) TCGA-16-0848-01 16 89256813 89256813 C T CDH15 Missense_Mutation p.R381W 0.41 tolerated(0.19) probably_damaging(0.953) TCGA-16-0848-01 16 89259999 89259999 C T CDH15 Silent p.G659G 0.36 TCGA-16-0848-01 17 1562767 1562767 G A PRPF8 Silent p.H1674H 0.09 TCGA-16-0848-01 17 17394888 17394888 C T MED9 3'UTR 0.33 TCGA-16-0848-01 17 1841006 1841006 G A RTN4RL1 Missense_Mutation p.T37M 0.33 deleterious(0) probably_damaging(0.999) TCGA-16-0848-01 17 19685379 19685379 C T ULK2 Missense_Mutation p.R821Q 0.07 tolerated(1) benign(0.046) TCGA-16-0848-01 17 20914479 20914479 G A USP22 Missense_Mutation p.T363M 0.16 tolerated(0.21) benign(0.045) TCGA-16-0848-01 17 27014467 27014467 G A SUPT6H Missense_Mutation p.R995Q 0.32 deleterious(0) possibly_damaging(0.556) TCGA-16-0848-01 17 34923534 34923534 C T GGNBP2 Missense_Mutation p.S187L 0.35 deleterious(0.03) possibly_damaging(0.806) TCGA-16-0848-01 17 3664448 3664448 G A ITGAE Missense_Mutation p.R153C 0.09 tolerated(0.18) possibly_damaging(0.517) TCGA-16-0848-01 17 39680731 39680731 G A KRT19 Missense_Mutation p.P241L 0.08 deleterious(0) probably_damaging(1) TCGA-16-0848-01 17 42397991 42397991 G A SLC25A39 Missense_Mutation p.T267M 0.07 tolerated(0.09) benign(0.017) TCGA-16-0848-01 17 42477313 42477313 C T GPATCH8 Missense_Mutation p.R711H 0.12 deleterious_low_confidence(0.01) probably_damaging(0.964) TCGA-16-0848-01 17 44068898 44068898 G A MAPT Missense_Mutation p.A485T 0.05 tolerated(0.11) possibly_damaging(0.811) TCGA-16-0848-01 17 46002386 46002386 G A SP2 Missense_Mutation p.G492R 0.08 tolerated(0.15) benign(0.374) TCGA-16-0848-01 17 56270754 56270754 G A EPX Missense_Mutation p.G65S 0.33 tolerated(0.42) possibly_damaging(0.505) TCGA-16-0848-01 17 56332231 56332231 G A LPO Missense_Mutation p.E389K 0.31 deleterious(0.01) probably_damaging(1) TCGA-16-0848-01 17 59485744 59485744 C T TBX2 Silent p.R672R 0.32 TCGA-16-0848-01 17 72537545 72537545 C T CD300C 3'UTR 0.36 TCGA-16-0848-01 17 72768379 72768379 G A NAT9 Silent p.A124A 0.32 TCGA-16-0848-01 17 73888504 73888504 C T TRIM65 Silent p.T196T 0.09 TCGA-16-0848-01 17 73949571 73949571 C T ACOX1 Missense_Mutation p.R302Q 0.32 deleterious(0) probably_damaging(1) TCGA-16-0848-01 17 74005378 74005378 C T EVPL Missense_Mutation p.R1303H 0.37 tolerated(0.05) probably_damaging(0.999) TCGA-16-0848-01 17 74467882 74467882 G A RHBDF2 Missense_Mutation p.R802W 0.48 deleterious(0) possibly_damaging(0.893) TCGA-16-0848-01 17 7577022 7577022 G A TP53 Nonsense_Mutation p.R306* 0.77 TCGA-16-0848-01 17 7690256 7690256 G A DNAH2 Missense_Mutation p.V2170M 0.09 probably_damaging(1) TCGA-16-0848-01 17 76993580 76993580 C T CANT1 Missense_Mutation p.R42H 0.50 deleterious(0.03) probably_damaging(0.932) TCGA-16-0848-01 17 79168726 79168726 C T AZI1 Missense_Mutation p.R688H 0.27 deleterious(0.02) benign(0.049) TCGA-16-0848-01 17 7984138 7984138 G A AC129492.6 3'UTR 0.39 TCGA-16-0848-01 17 79845989 79845989 G A ALYREF 3'UTR 0.09 TCGA-16-0848-01 17 79990839 79990839 G A RAC3 Missense_Mutation p.C81Y 0.04 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-16-0848-01 17 8379051 8379051 G A MYH10 3'UTR 0.06 TCGA-16-0848-01 17 8731911 8731911 C T PIK3R6 Missense_Mutation p.R429H 0.26 deleterious(0) probably_damaging(0.921) TCGA-16-0848-01 18 11884615 11884615 C T MPPE1 Silent p.T340T 0.36 TCGA-16-0848-01 18 34320643 34320643 G A FHOD3 Missense_Mutation p.D1026N 0.47 deleterious(0) benign(0.06) TCGA-16-0848-01 18 43205738 43205738 C T SLC14A2 Missense_Mutation p.R81W 0.37 deleterious(0.02) benign(0.002) TCGA-16-0848-01 18 580690 580690 G A CETN1 Silent p.T94T 0.10 TCGA-16-0848-01 18 77170977 77170977 G A NFATC1 Silent p.P221P 0.37 TCGA-16-0848-01 19 10244971 10244971 C T DNMT1 Missense_Mutation p.V1596M 0.28 deleterious(0) probably_damaging(0.994) TCGA-16-0848-01 19 1056925 1056925 G A ABCA7 Missense_Mutation p.V1536I 0.06 deleterious(0.01) benign(0.282) TCGA-16-0848-01 19 10823812 10823812 G A QTRT1 Missense_Mutation p.V360I 0.24 tolerated(1) benign(0.002) TCGA-16-0848-01 19 1089891 1089891 G A POLR2E Missense_Mutation p.R187C 0.09 deleterious(0) probably_damaging(0.971) TCGA-16-0848-01 19 12691924 12691924 C T ZNF490 Missense_Mutation p.R322Q 0.28 tolerated(0.44) benign(0.269) TCGA-16-0848-01 19 12786341 12786341 C T WDR83 Missense_Mutation p.A268V 0.35 tolerated(0.1) benign(0.001) TCGA-16-0848-01 19 1391040 1391040 G A NDUFS7 Silent p.A133A 0.31 TCGA-16-0848-01 19 15904882 15904882 C T OR10H5 Silent p.S8S 0.20 TCGA-16-0848-01 19 17397261 17397261 G A ANKLE1 Missense_Mutation p.R583H 0.08 deleterious(0) probably_damaging(0.99) TCGA-16-0848-01 19 18468313 18468313 G A PGPEP1 Missense_Mutation p.V109M 0.17 tolerated(0.27) benign(0.298) TCGA-16-0848-01 19 18507684 18507684 C T LRRC25 Silent p.A30A 0.30 TCGA-16-0848-01 19 19790270 19790270 C T ZNF101 Missense_Mutation p.R158W 0.25 deleterious(0.03) benign(0.339) TCGA-16-0848-01 19 2129425 2129425 G A AP3D1 Silent p.C208C 0.07 TCGA-16-0848-01 19 2351557 2351557 G A LLfos-48D6.1 3'Flank 0.29 TCGA-16-0848-01 19 36216460 36216460 C T KMT2B Silent p.H1241H 0.26 TCGA-16-0848-01 19 36435667 36435667 G A LRFN3 Missense_Mutation p.G545S 0.11 deleterious(0.01) probably_damaging(0.951) TCGA-16-0848-01 19 38189897 38189897 G A ZNF607 Nonsense_Mutation p.R379* 0.05 TCGA-16-0848-01 19 38632047 38632047 C T SIPA1L3 Missense_Mutation p.R1123W 0.06 deleterious(0) probably_damaging(0.987) TCGA-16-0848-01 19 40357664 40357664 G A FCGBP Missense_Mutation p.R5217C 0.18 probably_damaging(0.978) TCGA-16-0848-01 19 40711831 40711831 G A MAP3K10 Missense_Mutation p.R401H 0.50 deleterious(0.03) possibly_damaging(0.564) TCGA-16-0848-01 19 41510225 41510225 C T CYP2B6 Missense_Mutation p.R120C 0.10 deleterious(0.02) benign(0.071) TCGA-16-0848-01 19 4164534 4164534 G A CREB3L3 Missense_Mutation p.R204Q 0.24 tolerated(0.17) possibly_damaging(0.806) TCGA-16-0848-01 19 43414891 43414891 C A PSG6 Missense_Mutation p.G183C 0.07 deleterious(0.02) probably_damaging(1) TCGA-16-0848-01 19 436179 436179 C T SHC2 Silent p.A313A 0.14 TCGA-16-0848-01 19 44244357 44244357 G A SMG9 Missense_Mutation p.R239W 0.26 deleterious(0.01) probably_damaging(0.959) TCGA-16-0848-01 19 46393933 46393933 C T MYPOP Missense_Mutation p.R383Q 0.30 deleterious_low_confidence(0.01) probably_damaging(0.953) TCGA-16-0848-01 19 49651416 49651416 G A PPFIA3 Missense_Mutation p.R971H 0.30 deleterious(0) probably_damaging(0.936) TCGA-16-0848-01 19 49878085 49878085 C T DKKL1 Missense_Mutation p.R177W 0.09 deleterious_low_confidence(0.04) benign(0.094) TCGA-16-0848-01 19 50156248 50156248 C T SCAF1 Missense_Mutation p.R868C 0.05 unknown(0) TCGA-16-0848-01 19 50720970 50720970 C T MYH14 Silent p.H168H 0.20 TCGA-16-0848-01 19 55175721 55175721 G A LILRB4 Missense_Mutation p.R147Q 0.24 tolerated(0.72) benign(0.006) TCGA-16-0848-01 19 55605784 55605784 G A PPP1R12C Missense_Mutation p.R538W 0.11 deleterious(0) probably_damaging(0.996) TCGA-16-0848-01 19 55994065 55994065 G A ZNF628 Missense_Mutation p.R502Q 0.20 deleterious(0.02) probably_damaging(0.914) TCGA-16-0848-01 19 56104635 56104635 G A FIZ1 Silent p.D224D 0.28 TCGA-16-0848-01 19 58549387 58549387 G A ZSCAN1 Silent p.T61T 0.24 TCGA-16-0848-01 19 58928424 58928424 C T ZNF584 Missense_Mutation p.T180M 0.06 deleterious(0.01) benign(0.073) TCGA-16-0848-01 19 5918585 5918585 G A RANBP3 Silent p.I465I 0.06 TCGA-16-0848-01 19 6534840 6534840 C T TNFSF9 Silent p.A176A 0.18 TCGA-16-0848-01 19 6733178 6733178 C T GPR108 Splice_Site p.X286_splice 0.06 TCGA-16-0848-01 19 7747477 7747477 G A TRAPPC5 Missense_Mutation p.R113H 0.37 tolerated(0.05) benign(0.018) TCGA-16-0848-01 19 828365 828365 C T AZU1 Missense_Mutation p.A65V 0.10 deleterious(0.01) benign(0.058) TCGA-16-0848-01 19 8491528 8491528 C T MARCH2 Missense_Mutation p.A71V 0.27 tolerated(0.09) benign(0.443) TCGA-16-0848-01 1 115130045 115130045 C T DENND2C Silent p.S906S 0.34 TCGA-16-0848-01 1 116940613 116940613 A G ATP1A1 Missense_Mutation p.T693A 0.28 deleterious(0) possibly_damaging(0.902) TCGA-16-0848-01 1 144994901 144994901 C T PDE4DIP 5'UTR 0.08 TCGA-16-0848-01 1 149879665 149879665 G A SV2A Silent p.R491R 0.42 TCGA-16-0848-01 1 150532263 150532263 G A ADAMTSL4 Silent p.T990T 0.04 TCGA-16-0848-01 1 156704189 156704189 G A RRNAD1 Missense_Mutation p.R342H 0.35 deleterious(0) probably_damaging(1) TCGA-16-0848-01 1 158645986 158645986 C A SPTA1 Nonsense_Mutation p.E353* 0.38 TCGA-16-0848-01 1 159021628 159021628 G T IFI16 Nonsense_Mutation p.E553* 0.33 TCGA-16-0848-01 1 16258484 16258484 C T SPEN Missense_Mutation p.R1917C 0.36 probably_damaging(0.997) TCGA-16-0848-01 1 16535360 16535360 G A ARHGEF19 Missense_Mutation p.R64C 0.29 tolerated_low_confidence(0.07) benign(0.022) TCGA-16-0848-01 1 167095754 167095754 C T DUSP27 Silent p.H462H 0.39 TCGA-16-0848-01 1 171560758 171560758 G A PRRC2C Silent p.T2742T 0.33 TCGA-16-0848-01 1 172628494 172628494 G A FASLG Silent p.P51P 0.29 TCGA-16-0848-01 1 176564298 176564298 C T PAPPA2 Missense_Mutation p.R520W 0.05 deleterious(0.02) probably_damaging(0.912) TCGA-16-0848-01 1 178482209 178482209 C T TEX35 5'Flank 0.28 TCGA-16-0848-01 1 186140479 186140479 A G HMCN1 Silent p.E5195E 0.42 TCGA-16-0848-01 1 186281430 186281430 G A PRG4 Missense_Mutation p.R1306H 0.14 benign(0.037) TCGA-16-0848-01 1 190067323 190067323 C T BRINP3 Missense_Mutation p.R709H 0.08 deleterious(0) probably_damaging(0.996) TCGA-16-0848-01 1 201772835 201772863 AGAGTTGGGTAGGTAAAGGTTTGGGGGGT GAGTTGGGTAGGTAAAGGTTTGGGGGGTG NAV1 Splice_Site p.X1211_splice 0.16 TCGA-16-0848-01 1 203740033 203740033 G A LAX1 Missense_Mutation p.C56Y 0.08 tolerated(0.13) probably_damaging(0.955) TCGA-16-0848-01 1 220978599 220978599 G A MARC1 Silent p.P290P 0.29 TCGA-16-0848-01 1 22205597 22205597 C T HSPG2 Silent p.T787T 0.40 TCGA-16-0848-01 1 223568626 223568626 C A C1orf65 Missense_Mutation p.S603R 0.07 tolerated(0.2) benign(0.111) TCGA-16-0848-01 1 226550845 226550845 C T PARP1 Missense_Mutation p.A935T 0.35 deleterious(0) benign(0.214) TCGA-16-0848-01 1 228466649 228466649 C T OBSCN Silent p.F2802F 0.42 TCGA-16-0848-01 1 228481883 228481883 G A OBSCN Missense_Mutation p.R4150K 0.06 benign(0.064) TCGA-16-0848-01 1 232579350 232579350 G A SIPA1L2 Silent p.D1145D 0.53 TCGA-16-0848-01 1 23848404 23848404 C T E2F2 Missense_Mutation p.R168H 0.31 deleterious(0) probably_damaging(1) TCGA-16-0848-01 1 24201914 24201914 C T CNR2 Missense_Mutation p.R65H 0.32 deleterious(0.01) benign(0.265) TCGA-16-0848-01 1 24384096 24384096 C T MYOM3 Missense_Mutation p.V1358I 0.09 tolerated(0.58) benign(0.002) TCGA-16-0848-01 1 24995716 24995716 G A SRRM1 Silent p.T614T 0.08 TCGA-16-0848-01 1 26104805 26104805 C T MAN1C1 Silent p.Y489Y 0.36 TCGA-16-0848-01 1 27175134 27175134 C T ZDHHC18 Missense_Mutation p.R178W 0.27 deleterious(0) probably_damaging(0.999) TCGA-16-0848-01 1 29533366 29533366 G A MECR Missense_Mutation p.P153L 0.09 deleterious(0) possibly_damaging(0.883) TCGA-16-0848-01 1 34046362 34046362 G A CSMD2 Missense_Mutation p.R2462C 0.51 deleterious(0.04) possibly_damaging(0.458) TCGA-16-0848-01 1 3427453 3427453 A G MEGF6 Silent p.C376C 0.08 TCGA-16-0848-01 1 34554768 34554768 C T CSMD2 Missense_Mutation p.G32S 0.49 tolerated(0.11) benign(0.2) TCGA-16-0848-01 1 41304170 41304170 G A KCNQ4 Missense_Mutation p.R688H 0.37 tolerated(0.08) benign(0.015) TCGA-16-0848-01 1 42693567 42693567 C T FOXJ3 Missense_Mutation p.R172Q 0.05 deleterious(0.05) possibly_damaging(0.757) TCGA-16-0848-01 1 43395422 43395422 C T SLC2A1 Missense_Mutation p.V237M 0.36 deleterious(0.01) probably_damaging(0.991) TCGA-16-0848-01 1 44057051 44057051 C T PTPRF Missense_Mutation p.P453L 0.33 tolerated(0.32) benign(0.054) TCGA-16-0848-01 1 45115362 45115362 T C RNF220 Missense_Mutation p.F492S 0.40 deleterious(0.01) benign(0.101) TCGA-16-0848-01 1 45292325 45292325 G A PTCH2 Silent p.A937A 0.30 TCGA-16-0848-01 1 46725681 46725681 G A RAD54L Missense_Mutation p.R106H 0.34 tolerated(0.16) probably_damaging(0.992) TCGA-16-0848-01 1 6038471 6038471 G A NPHP4 Silent p.G46G 0.46 TCGA-16-0848-01 1 71512570 71512570 C T PTGER3 Missense_Mutation p.A231T 0.33 tolerated(0.1) probably_damaging(0.986) TCGA-16-0848-01 1 8419828 8419828 G A RERE Missense_Mutation p.A1205V 0.26 unknown(0) TCGA-16-0848-01 1 86591111 86591111 T C COL24A1 Missense_Mutation p.K303R 0.33 tolerated(0.39) benign(0.003) TCGA-16-0848-01 1 89480300 89480300 C T GBP3 Missense_Mutation p.V120I 0.34 tolerated(0.59) benign(0.005) TCGA-16-0848-01 1 89885754 89885754 C T GBP1P1 RNA 0.08 TCGA-16-0848-01 1 91404393 91404393 C T ZNF644 Missense_Mutation p.V840I 0.40 tolerated(0.13) probably_damaging(0.99) TCGA-16-0848-01 20 13763292 13763293 - T ESF1 Frame_Shift_Ins p.N165Kfs*2 0.11 TCGA-16-0848-01 20 31294522 31294522 C T COMMD7 Silent p.A94A 0.31 TCGA-16-0848-01 20 330326 330326 C T NRSN2 Silent p.R13R 0.47 TCGA-16-0848-01 20 37638953 37638953 C T DHX35 Missense_Mutation p.T418M 0.35 deleterious(0.01) probably_damaging(0.993) TCGA-16-0848-01 20 4168028 4168028 C T SMOX Nonsense_Mutation p.R548* 0.06 TCGA-16-0848-01 20 48098878 48098878 C T KCNB1 Missense_Mutation p.R47H 0.59 deleterious(0.01) probably_damaging(0.976) TCGA-16-0848-01 20 61875401 61875401 G A NKAIN4 Silent p.S169S 0.17 TCGA-16-0848-01 20 61919141 61919141 C T ARFGAP1 Silent p.D387D 0.22 TCGA-16-0848-01 20 62493318 62493318 G A ABHD16B Missense_Mutation p.R142H 0.40 deleterious(0.01) benign(0.035) TCGA-16-0848-01 20 62521331 62521331 C T TPD52L2 3'UTR 0.33 TCGA-16-0848-01 20 62550836 62550836 C T DNAJC5 Intron 0.20 TCGA-16-0848-01 20 9520209 9520209 T C PAK7 Missense_Mutation p.Q687R 0.38 deleterious(0.04) benign(0.001) TCGA-16-0848-01 21 32638884 32638884 G A TIAM1 Silent p.Y135Y 0.37 TCGA-16-0848-01 21 37775082 37775082 C T CHAF1B Silent p.D230D 0.26 TCGA-16-0848-01 21 47423805 47423805 G A COL6A1 Missense_Mutation p.G989S 0.15 deleterious(0.01) probably_damaging(0.999) TCGA-16-0848-01 21 47692683 47692683 G A MCM3AP Missense_Mutation p.R753W 0.36 deleterious(0) probably_damaging(1) TCGA-16-0848-01 21 47931508 47931508 C T DIP2A Silent p.A361A 0.27 TCGA-16-0848-01 22 18022148 18022148 C T CECR2 Silent p.A751A 0.49 TCGA-16-0848-01 22 23223445 23223445 G A IGLV3-1 Missense_Mutation p.R72Q 0.35 deleterious(0.04) possibly_damaging(0.533) TCGA-16-0848-01 22 24379438 24379438 G A GSTT1 Missense_Mutation p.R92C 0.35 tolerated(0.09) benign(0.049) TCGA-16-0848-01 22 25019109 25019109 C T GGT1 Missense_Mutation p.R257C 0.38 deleterious(0.03) benign(0.045) TCGA-16-0848-01 22 25251579 25251579 G A SGSM1 Missense_Mutation p.V245M 0.27 deleterious(0.01) probably_damaging(0.998) TCGA-16-0848-01 22 32021781 32021781 C T PISD Silent p.A7A 0.25 TCGA-16-0848-01 22 38823525 38823525 G A KCNJ4 Missense_Mutation p.R205C 0.10 deleterious(0.03) probably_damaging(1) TCGA-16-0848-01 22 42043069 42043069 G A XRCC6 Missense_Mutation p.D315N 0.47 deleterious(0.04) benign(0.151) TCGA-16-0848-01 22 42269910 42269910 C T SREBF2 Missense_Mutation p.P326S 0.07 tolerated(0.16) benign(0.358) TCGA-16-0848-01 22 43089630 43089630 C T A4GALT Missense_Mutation p.V110M 0.30 deleterious(0) probably_damaging(0.978) TCGA-16-0848-01 22 51018667 51018667 G A CHKB Missense_Mutation p.A257V 0.03 tolerated(0.17) benign(0.001) TCGA-16-0848-01 2 105885962 105885962 G A TGFBRAP1 Missense_Mutation p.H725Y 0.31 deleterious(0.01) benign(0.018) TCGA-16-0848-01 2 111907683 111907683 C T BCL2L11 Missense_Mutation p.R153W 0.09 deleterious(0) probably_damaging(0.999) TCGA-16-0848-01 2 11333954 11333954 T A ROCK2 Missense_Mutation p.Q1213L 0.46 deleterious(0) probably_damaging(0.996) TCGA-16-0848-01 2 113343853 113343853 G A CHCHD5 Missense_Mutation p.A74T 0.10 tolerated(0.25) benign(0.058) TCGA-16-0848-01 2 119727750 119727750 C T MARCO Missense_Mutation p.A87V 0.38 tolerated(0.14) possibly_damaging(0.602) TCGA-16-0848-01 2 125660527 125660527 G A CNTNAP5 Missense_Mutation p.V1168I 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-16-0848-01 2 152320365 152320365 G A RIF1 Missense_Mutation p.R1444H 0.38 tolerated(0.19) benign(0.028) TCGA-16-0848-01 2 160028702 160028702 C T TANC1 Silent p.S474S 0.34 TCGA-16-0848-01 2 162865098 162865098 G A DPP4 Missense_Mutation p.A654V 0.37 deleterious(0) probably_damaging(0.995) TCGA-16-0848-01 2 165796039 165796039 C T SLC38A11 Missense_Mutation p.R97H 0.26 deleterious(0.01) benign(0.347) TCGA-16-0848-01 2 166171996 166171996 G A SCN2A Missense_Mutation p.A467T 0.11 tolerated(0.29) benign(0.019) TCGA-16-0848-01 2 169985569 169985569 C T LRP2 Missense_Mutation p.R4585Q 0.40 probably_damaging(0.91) TCGA-16-0848-01 2 171702021 171702021 G A GAD1 Missense_Mutation p.A253T 0.45 tolerated(0.28) probably_damaging(1) TCGA-16-0848-01 2 17697946 17697946 T A RAD51AP2 Silent p.L579L 0.48 TCGA-16-0848-01 2 179436773 179436773 C G TTN Missense_Mutation p.G24696R 0.07 TCGA-16-0848-01 2 179452805 179452805 G A TTN Missense_Mutation p.A21110V 0.41 TCGA-16-0848-01 2 179979922 179979922 C T SESTD1 Missense_Mutation p.R570H 0.38 tolerated(0.08) benign(0.137) TCGA-16-0848-01 2 18113470 18113470 G A KCNS3 Missense_Mutation p.A399T 0.06 deleterious(0) possibly_damaging(0.825) TCGA-16-0848-01 2 186673491 186673491 T C FSIP2 Silent p.N6575N 0.32 TCGA-16-0848-01 2 197189764 197189764 G A HECW2 Silent p.H227H 0.37 TCGA-16-0848-01 2 198511264 198511264 C T RFTN2 Missense_Mutation p.R89Q 0.13 tolerated(0.14) benign(0.045) TCGA-16-0848-01 2 198950849 198950849 C T PLCL1 Missense_Mutation p.R870W 0.08 deleterious(0) probably_damaging(0.974) TCGA-16-0848-01 2 204291932 204291932 G A ABI2 Missense_Mutation p.E429K 0.30 deleterious(0.01) possibly_damaging(0.78) TCGA-16-0848-01 2 219269024 219269024 C T CTDSP1 Missense_Mutation p.P221L 0.35 deleterious(0.01) benign(0.377) TCGA-16-0848-01 2 220103243 220103243 G A GLB1L Missense_Mutation p.P401S 0.09 deleterious(0) probably_damaging(1) TCGA-16-0848-01 2 223066132 223066132 C T PAX3 Missense_Mutation p.A484T 0.32 deleterious_low_confidence(0.01) benign(0.054) TCGA-16-0848-01 2 225652060 225652060 G A DOCK10 Nonsense_Mutation p.R1825* 0.41 TCGA-16-0848-01 2 234113281 234113281 G A INPP5D Missense_Mutation p.R1150H 0.35 deleterious_low_confidence(0) probably_damaging(1) TCGA-16-0848-01 2 234431912 234431912 G A USP40 Missense_Mutation p.T713M 0.38 tolerated(0.11) benign(0.417) TCGA-16-0848-01 2 237028859 237028859 G A AGAP1 Missense_Mutation p.R713H 0.23 deleterious(0.03) benign(0.32) TCGA-16-0848-01 2 237074631 237074631 C T GBX2 Missense_Mutation p.V325I 0.08 deleterious(0) probably_damaging(0.979) TCGA-16-0848-01 2 241621663 241621663 C T AQP12B Missense_Mutation p.V198I 0.24 tolerated(0.37) benign(0.009) TCGA-16-0848-01 2 24531613 24531613 C T ITSN2 Silent p.S222S 0.34 TCGA-16-0848-01 2 26534793 26534793 G A GPR113 Silent p.F601F 0.37 TCGA-16-0848-01 2 38302293 38302293 C T CYP1B1 Missense_Mutation p.R80H 0.35 deleterious(0.02) benign(0.081) TCGA-16-0848-01 2 48023200 48023200 G T MSH6 Nonsense_Mutation p.E209* 0.26 TCGA-16-0848-01 2 67631720 67631720 A T ETAA1 Missense_Mutation p.I636L 0.41 tolerated(0.38) unknown(0) TCGA-16-0848-01 2 72360258 72360258 G A CYP26B1 Missense_Mutation p.T347M 0.39 tolerated(0.14) benign(0.108) TCGA-16-0848-01 2 74657761 74657761 C T RTKN Missense_Mutation p.G119S 0.44 deleterious(0) probably_damaging(1) TCGA-16-0848-01 2 74690030 74690030 G A MOGS Missense_Mutation p.R296C 0.35 deleterious(0.03) probably_damaging(0.985) TCGA-16-0848-01 2 85596933 85596933 G C ELMOD3 Missense_Mutation p.V114L 0.37 tolerated(0.38) benign(0.004) TCGA-16-0848-01 2 85769710 85769710 G A MAT2A Missense_Mutation p.R264H 0.09 deleterious(0) probably_damaging(0.981) TCGA-16-0848-01 2 87214113 87214113 G A RGPD1 Missense_Mutation p.G1356D 0.21 tolerated(0.05) possibly_damaging(0.503) TCGA-16-0848-01 2 96781576 96781576 C T ADRA2B Missense_Mutation p.A105T 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-16-0848-01 2 96789932 96789932 G A ASTL Missense_Mutation p.A318V 0.11 tolerated_low_confidence(0.31) benign(0.011) TCGA-16-0848-01 2 98201529 98201529 C T ANKRD36B RNA 0.37 TCGA-16-0848-01 2 99013037 99013037 C T CNGA3 Silent p.I468I 0.42 TCGA-16-0848-01 3 101062705 101062705 A T SENP7 Missense_Mutation p.I644K 0.07 tolerated(1) benign(0) TCGA-16-0848-01 3 112357999 112357999 C T CCDC80 Missense_Mutation p.V252I 0.34 deleterious(0.04) possibly_damaging(0.751) TCGA-16-0848-01 3 113513742 113513742 C T ATP6V1A Missense_Mutation p.R338C 0.37 deleterious(0) probably_damaging(1) TCGA-16-0848-01 3 113652451 113652451 G A GRAMD1C Missense_Mutation p.V435M 0.35 deleterious(0.03) benign(0.148) TCGA-16-0848-01 3 114057978 114057978 G A ZBTB20 Silent p.R700R 0.38 TCGA-16-0848-01 3 122247146 122247146 G A PARP9 3'UTR 0.33 TCGA-16-0848-01 3 124165114 124165114 C T KALRN Silent p.S1138S 0.32 TCGA-16-0848-01 3 12940859 12940859 C T IQSEC1 3'UTR 0.34 TCGA-16-0848-01 3 134267987 134267987 A G CEP63 Missense_Mutation p.H384R 0.47 tolerated(0.07) benign(0.113) TCGA-16-0848-01 3 136152489 136152489 C T STAG1 Missense_Mutation p.R520H 0.29 tolerated(0.16) benign(0.008) TCGA-16-0848-01 3 136699396 136699396 G A IL20RB Silent p.A59A 0.39 TCGA-16-0848-01 3 155838572 155838572 C T KCNAB1 Missense_Mutation p.R58C 0.38 deleterious_low_confidence(0) benign(0.249) TCGA-16-0848-01 3 155860813 155860813 G A KCNAB1 Intron 0.40 TCGA-16-0848-01 3 158376742 158376742 G A GFM1 Missense_Mutation p.R372H 0.08 deleterious(0) probably_damaging(1) TCGA-16-0848-01 3 16242256 16242256 C T GALNT15 Silent p.L279L 0.43 TCGA-16-0848-01 3 172165882 172165882 G A GHSR Missense_Mutation p.P108S 0.09 deleterious(0) probably_damaging(0.912) TCGA-16-0848-01 3 196746598 196746598 G A MFI2 Intron 0.45 TCGA-16-0848-01 3 197562679 197562679 C T LRCH3 Nonsense_Mutation p.R413* 0.34 TCGA-16-0848-01 3 20113931 20113931 G A KAT2B Missense_Mutation p.R137Q 0.35 deleterious(0) probably_damaging(0.984) TCGA-16-0848-01 3 39159581 39159581 C T TTC21A Silent p.S246S 0.32 TCGA-16-0848-01 3 43756457 43756457 G A ABHD5 Missense_Mutation p.R227H 0.37 deleterious(0.01) benign(0.199) TCGA-16-0848-01 3 46014676 46014676 G A FYCO1 Missense_Mutation p.S148L 0.41 deleterious(0.01) possibly_damaging(0.858) TCGA-16-0848-01 3 46727815 46727815 G T ALS2CL Missense_Mutation p.L217M 0.07 deleterious(0.01) possibly_damaging(0.897) TCGA-16-0848-01 3 47361229 47361229 G A KLHL18 Missense_Mutation p.M72I 0.17 tolerated(0.41) benign(0.002) TCGA-16-0848-01 3 48667314 48667314 C T SLC26A6 Missense_Mutation p.R507Q 0.06 deleterious(0.02) probably_damaging(0.989) TCGA-16-0848-01 3 49049292 49049292 C T WDR6 Missense_Mutation p.R139C 0.44 tolerated(0.15) probably_damaging(0.95) TCGA-16-0848-01 3 50385824 50385824 G A NPRL2 Silent p.C246C 0.11 TCGA-16-0848-01 3 52939018 52939018 C T SFMBT1 3'UTR 0.12 TCGA-16-0848-01 3 53260880 53260880 G A TKT Missense_Mutation p.R538C 0.10 tolerated(0.08) possibly_damaging(0.538) TCGA-16-0848-01 3 64132544 64132544 C T PRICKLE2 Missense_Mutation p.R541Q 0.35 tolerated(0.08) benign(0.261) TCGA-16-0848-01 3 9979763 9979763 G A CRELD1 Missense_Mutation p.A145T 0.07 tolerated(0.14) benign(0.176) TCGA-16-0848-01 4 103870465 103870465 T - SLC9B1 Frame_Shift_Del p.I111Ffs*9 0.09 TCGA-16-0848-01 4 113502849 113502849 G A C4orf21 Missense_Mutation p.R1470W 0.23 deleterious(0) probably_damaging(0.995) TCGA-16-0848-01 4 114278502 114278502 G A ANK2 Missense_Mutation p.V2910M 0.29 benign(0.024) TCGA-16-0848-01 4 119952958 119952958 C T SYNPO2 Missense_Mutation p.P1010S 0.29 tolerated(0.09) benign(0.089) TCGA-16-0848-01 4 140468117 140468117 C T SETD7 Missense_Mutation p.G43R 0.30 tolerated(0.05) probably_damaging(1) TCGA-16-0848-01 4 153247366 153247366 C T FBXW7 Missense_Mutation p.R479Q 0.44 deleterious(0.03) probably_damaging(1) TCGA-16-0848-01 4 166261645 166261645 A G MSMO1 Intron 0.36 TCGA-16-0848-01 4 17517125 17517125 G A CLRN2 Missense_Mutation p.R79H 0.57 deleterious(0.02) possibly_damaging(0.845) TCGA-16-0848-01 4 3254964 3254964 C T MSANTD1 Silent p.S117S 0.27 TCGA-16-0848-01 4 40122168 40122168 G A N4BP2 Missense_Mutation p.V813I 0.41 tolerated(0.18) benign(0.016) TCGA-16-0848-01 4 41035284 41035284 G A APBB2 5'UTR 0.45 TCGA-16-0848-01 4 41984874 41984874 G A DCAF4L1 Silent p.P355P 0.31 TCGA-16-0848-01 4 437359 437359 A T ZNF721 Missense_Mutation p.H299Q 0.20 deleterious(0) probably_damaging(0.999) TCGA-16-0848-01 4 47628494 47628494 G A CORIN Missense_Mutation p.P748L 0.20 tolerated(0.37) benign(0) TCGA-16-0848-01 4 5578073 5578073 C T EVC2 Missense_Mutation p.G1056R 0.11 tolerated(0.13) possibly_damaging(0.868) TCGA-16-0848-01 4 57335841 57335841 C T SRP72 Silent p.D44D 0.35 TCGA-16-0848-01 5 135207325 135207325 C T SLC25A48 Intron 0.36 TCGA-16-0848-01 5 140166175 140166175 G A PCDHA1 Silent p.A100A 0.26 TCGA-16-0848-01 5 140256412 140256412 C T PCDHA12 Missense_Mutation p.A452V 0.40 deleterious_low_confidence(0.02) benign(0.224) TCGA-16-0848-01 5 140516979 140516979 G A PCDHB5 Missense_Mutation p.A655T 0.43 deleterious_low_confidence(0.01) benign(0.104) TCGA-16-0848-01 5 140573934 140573934 G A PCDHB10 Silent p.S603S 0.19 TCGA-16-0848-01 5 140769366 140769366 C T PCDHGB4 Missense_Mutation p.R639C 0.42 deleterious(0.01) probably_damaging(0.996) TCGA-16-0848-01 5 140769558 140769558 G A PCDHGB4 Missense_Mutation p.V703M 0.09 deleterious(0.01) benign(0.047) TCGA-16-0848-01 5 140788504 140788504 C T PCDHGB6 Silent p.D245D 0.43 TCGA-16-0848-01 5 1494868 1494868 G A LPCAT1 Missense_Mutation p.T147M 0.45 deleterious(0.04) probably_damaging(0.997) TCGA-16-0848-01 5 149584169 149584169 G A SLC6A7 Silent p.T469T 0.32 TCGA-16-0848-01 5 150110210 150110210 G A DCTN4 Missense_Mutation p.R280W 0.09 deleterious(0) probably_damaging(0.985) TCGA-16-0848-01 5 153789139 153789139 C T GALNT10 Silent p.Y401Y 0.31 TCGA-16-0848-01 5 156479557 156479557 G A HAVCR1 Missense_Mutation p.T163M 0.44 deleterious(0.03) unknown(0) TCGA-16-0848-01 5 158250204 158250204 G A EBF1 Missense_Mutation p.T253M 0.11 tolerated(0.14) benign(0.115) TCGA-16-0848-01 5 16666848 16666848 G A MYO10 Missense_Mutation p.R2044C 0.47 deleterious(0) probably_damaging(0.993) TCGA-16-0848-01 5 174919229 174919229 C T SFXN1 Silent p.N41N 0.34 TCGA-16-0848-01 5 176942007 176942007 C T DDX41 Silent p.T236T 0.40 TCGA-16-0848-01 5 180040052 180040052 G A FLT4 Silent p.D1130D 0.10 TCGA-16-0848-01 5 180335641 180335641 C T BTNL8 Silent p.D35D 0.39 TCGA-16-0848-01 5 32712257 32712257 C T NPR3 Silent p.G125G 0.09 TCGA-16-0848-01 5 33937648 33937648 A G RXFP3 Missense_Mutation p.H268R 0.25 deleterious(0.02) benign(0.056) TCGA-16-0848-01 5 3599723 3599723 G A IRX1 Missense_Mutation p.E221K 0.47 deleterious(0) possibly_damaging(0.905) TCGA-16-0848-01 5 3600260 3600260 G A IRX1 Missense_Mutation p.A400T 0.08 tolerated(0.26) benign(0.114) TCGA-16-0848-01 5 75427933 75427933 C T SV2C Missense_Mutation p.R120W 0.35 deleterious(0.03) probably_damaging(0.984) TCGA-16-0848-01 5 79368170 79368170 G A THBS4 Missense_Mutation p.G597D 0.03 deleterious(0.01) benign(0.019) TCGA-16-0848-01 5 94876500 94876500 C T TTC37 Missense_Mutation p.R146Q 0.12 tolerated(0.05) benign(0.371) TCGA-16-0848-01 6 10709717 10709717 G A PAK1IP1 3'UTR 0.32 TCGA-16-0848-01 6 108985059 108985059 G A FOXO3 Silent p.A341A 0.30 TCGA-16-0848-01 6 131190961 131190961 C T EPB41L2 Silent p.P783P 0.09 TCGA-16-0848-01 6 132271281 132271281 C T CTGF Silent p.T187T 0.07 TCGA-16-0848-01 6 159642680 159642680 C T FNDC1 Missense_Mutation p.R240W 0.41 deleterious(0) unknown(0) TCGA-16-0848-01 6 24437397 24437397 C T GPLD1 Missense_Mutation p.R714H 0.31 deleterious(0.02) benign(0.091) TCGA-16-0848-01 6 26235110 26235110 T C HIST1H1D Missense_Mutation p.T18A 0.39 tolerated(0.31) benign(0.184) TCGA-16-0848-01 6 27219725 27219725 C T PRSS16 Missense_Mutation p.P305L 0.54 tolerated(0.23) benign(0.01) TCGA-16-0848-01 6 30709606 30709606 G A FLOT1 Missense_Mutation p.R28C 0.29 deleterious(0.03) probably_damaging(0.997) TCGA-16-0848-01 6 32797242 32797242 G A TAP2 Nonsense_Mutation p.R623* 0.14 TCGA-16-0848-01 6 34498308 34498308 G A PACSIN1 Silent p.A327A 0.20 TCGA-16-0848-01 6 42613326 42613326 G A UBR2 Missense_Mutation p.D803N 0.40 tolerated(1) benign(0.016) TCGA-16-0848-01 6 43410744 43410744 G A ABCC10 Missense_Mutation p.A755T 0.12 tolerated(0.12) probably_damaging(0.998) TCGA-16-0848-01 6 47763179 47763179 G A OPN5 Silent p.T212T 0.09 TCGA-16-0848-01 6 56368827 56368827 C T DST Missense_Mutation p.E3889K 0.31 probably_damaging(0.986) TCGA-16-0848-01 6 87966747 87966747 C T ZNF292 Missense_Mutation p.R1134C 0.24 tolerated(0.07) benign(0.013) TCGA-16-0848-01 6 97561954 97561954 G A KLHL32 Missense_Mutation p.R308Q 0.49 tolerated(0.08) probably_damaging(0.99) TCGA-16-0848-01 7 102815785 102815785 C T DPY19L2P2 RNA 0.30 TCGA-16-0848-01 7 107399075 107399075 C A CBLL1 Missense_Mutation p.P310T 0.28 tolerated(0.17) possibly_damaging(0.829) TCGA-16-0848-01 7 111368388 111368388 C T DOCK4 Missense_Mutation p.R1948Q 0.33 tolerated_low_confidence(0.41) benign(0.002) TCGA-16-0848-01 7 127224494 127224494 C T GCC1 Missense_Mutation p.R248H 0.04 deleterious(0) probably_damaging(0.988) TCGA-16-0848-01 7 129668810 129668810 G A ZC3HC1 Missense_Mutation p.R185C 0.14 deleterious(0) probably_damaging(0.988) TCGA-16-0848-01 7 129986370 129986370 C A CPA5 Missense_Mutation p.P15H 0.05 deleterious_low_confidence(0.04) unknown(0) TCGA-16-0848-01 7 135287666 135287666 G C NUP205 Missense_Mutation p.V876L 0.05 tolerated(0.18) benign(0.044) TCGA-16-0848-01 7 140374474 140374474 C T ADCK2 Nonsense_Mutation p.R333* 0.12 TCGA-16-0848-01 7 142836242 142836242 C T PIP Silent p.D92D 0.21 TCGA-16-0848-01 7 150764025 150764025 G A SLC4A2 Missense_Mutation p.R304Q 0.40 tolerated(0.21) benign(0.155) TCGA-16-0848-01 7 151097268 151097268 C T WDR86 Missense_Mutation p.A75T 0.26 deleterious(0) probably_damaging(1) TCGA-16-0848-01 7 156979677 156979677 G A UBE3C Silent p.T431T 0.23 TCGA-16-0848-01 7 158534576 158534576 G A ESYT2 Silent p.L629L 0.06 TCGA-16-0848-01 7 20198414 20198414 T C MACC1 Missense_Mutation p.K524E 0.14 tolerated(0.39) benign(0) TCGA-16-0848-01 7 2303974 2303974 G A SNX8 Silent p.I247I 0.25 TCGA-16-0848-01 7 30491372 30491372 G A NOD1 Missense_Mutation p.A554V 0.08 tolerated(0.36) benign(0.001) TCGA-16-0848-01 7 4056840 4056840 C T SDK1 Missense_Mutation p.R820W 0.22 deleterious(0.03) benign(0.056) TCGA-16-0848-01 7 44798930 44798930 C T ZMIZ2 Silent p.T288T 0.20 TCGA-16-0848-01 7 45717508 45717508 G A ADCY1 Missense_Mutation p.R549H 0.17 deleterious(0.03) benign(0.185) TCGA-16-0848-01 7 5427882 5427882 C T TNRC18 Missense_Mutation p.V525M 0.20 probably_damaging(0.997) TCGA-16-0848-01 7 56007338 56007338 G A ZNF713 Missense_Mutation p.R311H 0.07 tolerated(0.08) probably_damaging(0.993) TCGA-16-0848-01 7 72848451 72848451 G A FZD9 Silent p.P38P 0.14 TCGA-16-0848-01 7 73245625 73245625 G A CLDN4 Missense_Mutation p.V32M 0.09 deleterious(0.01) probably_damaging(0.996) TCGA-16-0848-01 7 73246133 73246133 G A CLDN4 Missense_Mutation p.R201H 0.16 deleterious(0.01) probably_damaging(0.994) TCGA-16-0848-01 7 73646444 73646444 C T RFC2 Missense_Mutation p.A353T 0.05 tolerated_low_confidence(0.12) benign(0.007) TCGA-16-0848-01 7 75048154 75048154 G A POM121C Silent p.S963S 0.13 TCGA-16-0848-01 7 810140 810140 G A HEATR2 Missense_Mutation p.V606M 0.12 tolerated(0.74) benign(0.011) TCGA-16-0848-01 7 82583308 82583308 T C PCLO Missense_Mutation p.R2321G 0.23 unknown(0) TCGA-16-0848-01 7 88962840 88962840 C T ZNF804B Missense_Mutation p.R182W 0.24 tolerated(0.06) benign(0.04) TCGA-16-0848-01 7 98507714 98507714 C T TRRAP Silent p.Y462Y 0.03 TCGA-16-0848-01 8 102701530 102701530 G A NCALD 3'UTR 0.22 TCGA-16-0848-01 8 11414330 11414330 C T BLK Silent p.T312T 0.46 TCGA-16-0848-01 8 133153430 133153430 G A KCNQ3 Missense_Mutation p.R471C 0.40 deleterious(0.01) probably_damaging(0.995) TCGA-16-0848-01 8 134274313 134274313 G A NDRG1 Silent p.D101D 0.06 TCGA-16-0848-01 8 22548304 22548304 G A EGR3 Silent p.C282C 0.13 TCGA-16-0848-01 8 28420428 28420428 G A FZD3 Missense_Mutation p.R634Q 0.40 tolerated_low_confidence(0.14) benign(0.003) TCGA-16-0848-01 8 28573652 28573652 C T EXTL3 Missense_Mutation p.R26C 0.35 tolerated(0.07) possibly_damaging(0.818) TCGA-16-0848-01 8 37756672 37756672 C T RAB11FIP1 Silent p.A96A 0.38 TCGA-16-0848-01 8 38835506 38835506 C A HTRA4 Missense_Mutation p.S269Y 0.06 deleterious(0) probably_damaging(0.999) TCGA-16-0848-01 8 48701499 48701499 C A PRKDC Missense_Mutation p.G3623C 0.33 probably_damaging(0.94) TCGA-16-0848-01 8 48887492 48887492 G A MCM4 Missense_Mutation p.G779S 0.37 deleterious(0) probably_damaging(1) TCGA-16-0848-01 8 623485 623485 G A ERICH1 Silent p.D289D 0.08 TCGA-16-0848-01 8 6735473 6735473 G A DEFB1 5'UTR 0.41 TCGA-16-0848-01 8 87679237 87679237 C T CNGB3 Silent p.A256A 0.34 TCGA-16-0848-01 8 95392576 95392576 G A RAD54B Missense_Mutation p.R682C 0.31 tolerated(0.21) benign(0.022) TCGA-16-0848-01 9 119413854 119413854 G A ASTN2 Missense_Mutation p.R958C 0.40 deleterious(0) unknown(0) TCGA-16-0848-01 9 126132440 126132440 G A CRB2 Missense_Mutation p.G370S 0.07 deleterious(0) probably_damaging(0.961) TCGA-16-0848-01 9 139840571 139840571 C T C8G Silent p.V127V 0.46 TCGA-16-0848-01 9 139912778 139912778 G A ABCA2 Silent p.D615D 0.40 TCGA-16-0848-01 9 140201554 140201554 G A EXD3 Missense_Mutation p.R827W 0.16 tolerated(0.1) benign(0.001) TCGA-16-0848-01 9 34610734 34610734 C T RPP25L 3'UTR 0.07 TCGA-16-0848-01 9 37745633 37745633 G A FRMPD1 Missense_Mutation p.V1202I 0.07 tolerated_low_confidence(0.29) benign(0.037) TCGA-16-0848-01 9 4561495 4561495 C T SLC1A1 Silent p.R93R 0.07 TCGA-16-0848-01 9 72046199 72046199 C T APBA1 3'UTR 0.27 TCGA-16-0848-01 9 72047547 72047547 G A APBA1 Missense_Mutation p.R783C 0.45 deleterious(0) probably_damaging(0.995) TCGA-16-0848-01 X 10085420 10085420 C T WWC3 Missense_Mutation p.R441W 0.12 deleterious(0) probably_damaging(0.977) TCGA-16-0848-01 X 101396020 101396020 C T TCEAL6 Missense_Mutation p.R95Q 0.26 tolerated(0.12) benign(0.056) TCGA-16-0848-01 X 12736819 12736819 C T FRMPD4 Missense_Mutation p.P1292S 0.10 tolerated_low_confidence(0.05) probably_damaging(0.928) TCGA-16-0848-01 X 1321297 1321297 C T CRLF2 Missense_Mutation p.R153Q 0.07 tolerated(0.11) possibly_damaging(0.807) TCGA-16-0848-01 X 138623273 138623273 G A F9 Missense_Mutation p.G106S 0.79 deleterious(0) probably_damaging(0.976) TCGA-16-0848-01 X 1460715 1460715 G A IL3RA Silent p.T19T 0.27 TCGA-16-0848-01 X 153135592 153135592 C T L1CAM Missense_Mutation p.E304K 0.84 deleterious(0.01) probably_damaging(0.954) TCGA-16-0848-01 X 17768353 17768353 C T SCML1 Missense_Mutation p.R215W 0.68 deleterious(0.02) possibly_damaging(0.513) TCGA-16-0848-01 X 19413307 19413307 C T MAP3K15 Missense_Mutation p.E696K 0.77 deleterious(0.01) possibly_damaging(0.792) TCGA-16-0848-01 X 45010839 45010839 G A CXorf36 3'UTR 0.72 TCGA-16-0848-01 X 48339874 48339874 G A FTSJ1 Missense_Mutation p.V177M 0.89 deleterious(0) probably_damaging(0.997) TCGA-16-0861-01 10 103281492 103281492 T G BTRC Missense_Mutation p.F141V 0.85 tolerated(0.05) benign(0.394) TCGA-16-0861-01 10 103990780 103990780 C A PITX3 Missense_Mutation p.A134S 0.78 tolerated(0.48) benign(0.001) TCGA-16-0861-01 10 63212455 63212455 G C TMEM26 Intron 0.60 TCGA-16-0861-01 10 89685315 89685318 GTAA - PTEN Splice_Site p.X70_splice 0.61 TCGA-16-0861-01 11 107518220 107518220 T A ELMOD1 Silent p.T149T 0.18 TCGA-16-0861-01 11 124857275 124857278 AAGA G CCDC15 In_Frame_Del p.K385_T386delinsA 0.30 TCGA-16-0861-01 11 76164415 76164415 A C C11orf30 Missense_Mutation p.L76F 0.45 deleterious_low_confidence(0) probably_damaging(0.971) TCGA-16-0861-01 12 118198971 118198971 C T KSR2 Silent p.P277P 0.41 TCGA-16-0861-01 12 15262109 15262109 G A RERG Nonsense_Mutation p.R179* 0.66 TCGA-16-0861-01 12 63543857 63543857 G A AVPR1A Missense_Mutation p.R254C 0.43 tolerated(0.06) benign(0.022) TCGA-16-0861-01 12 79693293 79693293 G T SYT1 Nonsense_Mutation p.E258* 0.40 TCGA-16-0861-01 12 998382 998382 C T WNK1 Missense_Mutation p.A1814V 0.30 tolerated(0.16) benign(0.024) TCGA-16-0861-01 13 33327545 33327545 G C PDS5B Missense_Mutation p.E938Q 0.41 tolerated(0.25) benign(0.088) TCGA-16-0861-01 14 25101153 25101153 G A GZMB Nonsense_Mutation p.R171* 0.62 TCGA-16-0861-01 14 31852819 31852835 GTGAAGACTTATGTCCA - HEATR5A Frame_Shift_Del p.G204* 0.76 TCGA-16-0861-01 14 51239167 51239167 C T NIN Missense_Mutation p.R278Q 0.59 deleterious(0) probably_damaging(0.998) TCGA-16-0861-01 14 91948148 91948148 A G SMEK1 Silent p.A229A 0.77 TCGA-16-0861-01 15 24921847 24921847 C T NPAP1 Missense_Mutation p.A278V 0.41 tolerated(0.28) benign(0.124) TCGA-16-0861-01 15 91811770 91811770 C T SV2B Silent p.Y436Y 0.47 TCGA-16-0861-01 16 28844550 28844550 A T ATXN2L Silent p.P610P 0.37 TCGA-16-0861-01 16 57741548 57741548 G A CCDC135 Silent p.K345K 0.35 TCGA-16-0861-01 17 13400013 13400013 A G HS3ST3A1 Missense_Mutation p.V241A 0.17 deleterious(0) probably_damaging(0.984) TCGA-16-0861-01 17 60757258 60757258 G A MRC2 Missense_Mutation p.V765I 0.47 tolerated(0.13) benign(0.017) TCGA-16-0861-01 17 7909994 7909994 C G GUCY2D Missense_Mutation p.P447R 0.47 deleterious(0.01) benign(0.391) TCGA-16-0861-01 18 12274219 12274219 A T CIDEA Missense_Mutation p.E153V 0.27 deleterious(0.01) probably_damaging(0.989) TCGA-16-0861-01 18 28736015 28736015 G A DSC1 Silent p.H154H 0.43 TCGA-16-0861-01 18 6894892 6894892 T C ARHGAP28 Splice_Site p.X476_splice 0.45 TCGA-16-0861-01 19 37879435 37879435 G C ZNF527 Missense_Mutation p.D162H 0.43 tolerated(0.22) benign(0.002) TCGA-16-0861-01 19 3825268 3825268 C T ZFR2 Silent p.A391A 0.27 TCGA-16-0861-01 19 7184472 7184472 C T INSR Missense_Mutation p.D277N 0.41 tolerated(0.33) benign(0.341) TCGA-16-0861-01 19 8468383 8468383 G A RAB11B Missense_Mutation p.V200M 0.35 deleterious_low_confidence(0.01) possibly_damaging(0.677) TCGA-16-0861-01 1 108417540 108417540 C A VAV3 Missense_Mutation p.V102F 0.35 deleterious(0) probably_damaging(0.961) TCGA-16-0861-01 1 152284952 152284952 C A FLG Nonsense_Mutation p.E804* 0.41 TCGA-16-0861-01 1 158323687 158323687 C T CD1E 5'UTR 0.44 TCGA-16-0861-01 1 65845142 65845142 G A DNAJC6 Missense_Mutation p.V201M 0.42 deleterious(0) probably_damaging(0.999) TCGA-16-0861-01 20 33516696 33516696 T A GSS Missense_Mutation p.I454F 0.34 tolerated(0.71) benign(0.234) TCGA-16-0861-01 22 50956414 50956414 A G NCAPH2 Missense_Mutation p.I145V 0.23 tolerated(1) benign(0.003) TCGA-16-0861-01 2 132237806 132237806 C T TUBA3D Silent p.A180A 0.25 TCGA-16-0861-01 2 160729003 160729003 A G LY75-CD302 Silent p.D692D 0.47 TCGA-16-0861-01 2 179442852 179442852 G A TTN Missense_Mutation p.P22797L 0.39 TCGA-16-0861-01 2 220159756 220159756 G A PTPRN Silent p.F872F 0.24 TCGA-16-0861-01 2 31467312 31467312 A T EHD3 Missense_Mutation p.N134Y 0.34 deleterious(0) probably_damaging(0.961) TCGA-16-0861-01 2 32774411 32774411 G A BIRC6 Missense_Mutation p.S4336N 0.32 benign(0.008) TCGA-16-0861-01 3 113503555 113503555 A G ATP6V1A Missense_Mutation p.I147V 0.04 tolerated(1) benign(0.001) TCGA-16-0861-01 3 38139020 38139020 T C DLEC1 Silent p.F819F 0.39 TCGA-16-0861-01 3 4508941 4508941 G T SUMF1 5'UTR 0.48 TCGA-16-0861-01 4 111539315 111539315 C T PITX2 Missense_Mutation p.S314N 0.04 tolerated(0.4) benign(0.09) TCGA-16-0861-01 4 155508007 155508007 C T FGA Missense_Mutation p.V192I 0.38 tolerated(0.32) benign(0.07) TCGA-16-0861-01 4 189012427 189012427 C A TRIML2 3'UTR 0.35 TCGA-16-0861-01 4 48575256 48575256 G C FRYL Missense_Mutation p.L951V 0.41 deleterious(0) probably_damaging(0.989) TCGA-16-0861-01 5 123983427 123983427 C T ZNF608 Missense_Mutation p.D884N 0.46 deleterious(0) probably_damaging(0.997) TCGA-16-0861-01 5 13829731 13829731 C T DNAH5 Missense_Mutation p.R2111H 0.39 possibly_damaging(0.812) TCGA-16-0861-01 5 140625602 140625602 T G PCDHB15 Missense_Mutation p.F152L 0.40 deleterious_low_confidence(0.03) benign(0.193) TCGA-16-0861-01 5 177548865 177548865 G A N4BP3 Missense_Mutation p.V500M 0.43 deleterious(0) probably_damaging(0.999) TCGA-16-0861-01 5 179555514 179555514 G T RASGEF1C Missense_Mutation p.P179T 0.42 tolerated(0.58) benign(0.066) TCGA-16-0861-01 5 79030268 79030268 T G CMYA5 Missense_Mutation p.W1894G 0.07 benign(0.14) TCGA-16-0861-01 6 56342227 56342227 G A DST Silent p.G4574G 0.39 TCGA-16-0861-01 6 84056002 84056002 A T ME1 Missense_Mutation p.C164S 0.23 tolerated(0.16) benign(0.024) TCGA-16-0861-01 7 123152166 123152166 G T IQUB Missense_Mutation p.Q77K 0.40 tolerated_low_confidence(0.6) benign(0.004) TCGA-16-0861-01 7 128370003 128370003 C T FAM71F1 Missense_Mutation p.R301C 0.07 tolerated(0.14) possibly_damaging(0.634) TCGA-16-0861-01 7 139416741 139416741 C T HIPK2 Silent p.L31L 0.09 TCGA-16-0861-01 7 146829418 146829418 C T CNTNAP2 Missense_Mutation p.R389W 0.39 tolerated(0.13) possibly_damaging(0.786) TCGA-16-0861-01 7 92732691 92732691 C A SAMD9 Missense_Mutation p.G907V 0.26 deleterious(0) possibly_damaging(0.715) TCGA-16-0861-01 7 99569575 99569575 A T AZGP1 Missense_Mutation p.V44D 0.04 tolerated(0.64) benign(0.221) TCGA-16-0861-01 8 124657952 124657952 A G KLHL38 3'UTR 0.59 TCGA-16-0861-01 9 113703772 113703772 C T LPAR1 Missense_Mutation p.R241Q 0.04 tolerated(0.88) benign(0.005) TCGA-16-0861-01 9 114860875 114860875 G T SUSD1 Missense_Mutation p.T450K 0.43 deleterious(0) possibly_damaging(0.88) TCGA-16-0861-01 9 95007245 95007245 G A IARS Missense_Mutation p.A967V 0.39 deleterious(0.03) benign(0.197) TCGA-16-0861-01 9 95007246 95007246 C A IARS Missense_Mutation p.A967S 0.40 tolerated(0.17) benign(0.009) TCGA-16-0861-01 X 138643014 138643014 G A F9 Missense_Mutation p.G280S 0.77 deleterious(0) probably_damaging(1) TCGA-16-0861-01 X 138864837 138864837 A G ATP11C Silent p.D610D 0.62 TCGA-16-1045-01 10 118084492 118084492 C T CCDC172 5'UTR 0.45 TCGA-16-1045-01 10 122645345 122645345 A G WDR11 Missense_Mutation p.N623S 0.43 tolerated(0.2) benign(0.05) TCGA-16-1045-01 10 89720852 89720852 C T PTEN Nonsense_Mutation p.R335* 0.45 TCGA-16-1045-01 11 20065530 20065530 G A NAV2 Missense_Mutation p.D994N 0.11 deleterious(0.03) probably_damaging(0.996) TCGA-16-1045-01 11 4976146 4976146 G A OR51A2 Silent p.A266A 0.16 TCGA-16-1045-01 11 55735214 55735214 G T OR10AG1 Missense_Mutation p.F242L 0.13 deleterious(0.01) possibly_damaging(0.867) TCGA-16-1045-01 11 5699638 5699638 G A TRIM5 Silent p.N180N 0.21 TCGA-16-1045-01 11 62602979 62602979 C T WDR74 Missense_Mutation p.R181Q 0.08 deleterious(0) possibly_damaging(0.852) TCGA-16-1045-01 12 109212060 109212060 T A SSH1 Missense_Mutation p.I82F 0.15 tolerated(0.3) benign(0.05) TCGA-16-1045-01 12 111772383 111772383 C T CUX2 Missense_Mutation p.S1022L 0.24 tolerated(0.1) benign(0.001) TCGA-16-1045-01 12 124333280 124333280 G A DNAH10 Missense_Mutation p.V1867M 0.20 benign(0.028) TCGA-16-1045-01 12 130935764 130935764 G A RIMBP2 Silent p.S143S 0.06 TCGA-16-1045-01 12 131620612 131620612 G C GPR133 Silent p.L766L 0.08 TCGA-16-1045-01 12 133682985 133682985 A G ZNF140 Silent p.Q374Q 0.31 TCGA-16-1045-01 12 21733300 21733300 G A GYS2 Silent p.D93D 0.31 TCGA-16-1045-01 12 3806169 3806169 G A EFCAB4B 5'UTR 0.20 TCGA-16-1045-01 12 6058287 6058287 G A VWF Missense_Mutation p.T2779M 0.15 deleterious(0.01) probably_damaging(0.93) TCGA-16-1045-01 12 72025622 72025622 T C ZFC3H1 Missense_Mutation p.M1136V 0.31 tolerated(0.32) benign(0) TCGA-16-1045-01 15 68118859 68118859 C T SKOR1 Silent p.D417D 0.13 TCGA-16-1045-01 15 93015653 93015653 T C C15orf32 Missense_Mutation p.V92A 0.04 tolerated_low_confidence(0.22) possibly_damaging(0.728) TCGA-16-1045-01 16 1449391 1449391 G A UNKL Missense_Mutation p.R240W 0.22 deleterious(0) probably_damaging(0.96) TCGA-16-1045-01 16 56693165 56693165 A G MT1F 3'UTR 0.09 TCGA-16-1045-01 16 570899 570899 C T RAB11FIP3 3'UTR 0.12 TCGA-16-1045-01 16 87368933 87368933 G A FBXO31 Missense_Mutation p.R325C 0.17 tolerated(0.08) benign(0.002) TCGA-16-1045-01 17 14683413 14683413 G A AC005863.1 RNA 0.38 TCGA-16-1045-01 17 28545202 28545202 T G SLC6A4 Missense_Mutation p.N211T 0.36 tolerated(0.22) benign(0.021) TCGA-16-1045-01 17 3029921 3029921 T C OR1G1 Missense_Mutation p.K309E 0.37 tolerated(0.16) benign(0.037) TCGA-16-1045-01 17 38652473 38652473 C T TNS4 Missense_Mutation p.A69T 0.32 tolerated(0.37) benign(0.017) TCGA-16-1045-01 17 60758249 60758249 G A MRC2 Silent p.T854T 0.36 TCGA-16-1045-01 18 22806841 22806841 G A ZNF521 Silent p.V347V 0.28 TCGA-16-1045-01 18 70502547 70502547 C A NETO1 Intron 0.09 TCGA-16-1045-01 19 3834878 3834878 C A ZFR2 Missense_Mutation p.A53S 0.09 tolerated(0.45) benign(0.132) TCGA-16-1045-01 19 38954119 38954119 C T RYR1 Silent p.H878H 0.09 TCGA-16-1045-01 19 49812323 49812323 A T SLC6A16 Missense_Mutation p.L347M 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-16-1045-01 19 51630344 51630344 G A SIGLEC9 Missense_Mutation p.R269H 0.27 tolerated(0.14) benign(0.104) TCGA-16-1045-01 19 56155985 56155985 C T ZNF581 Silent p.S16S 0.40 TCGA-16-1045-01 1 118166577 118166577 G A FAM46C Missense_Mutation p.V363I 0.29 tolerated(0.26) benign(0.002) TCGA-16-1045-01 1 163044147 163044147 C T RGS4 Missense_Mutation p.R236W 0.31 deleterious(0.01) benign(0.332) TCGA-16-1045-01 1 169811564 169811564 G A C1orf112 Missense_Mutation p.V578I 0.07 tolerated(0.08) benign(0.059) TCGA-16-1045-01 1 180063490 180063490 A G CEP350 Silent p.K2750K 0.36 TCGA-16-1045-01 1 181479699 181479699 C - CACNA1E Frame_Shift_Del p.M120Cfs*67 0.25 TCGA-16-1045-01 1 186329081 186329081 T C TPR Silent p.K413K 0.29 TCGA-16-1045-01 1 198608459 198608459 G T PTPRC Missense_Mutation p.V21L 0.09 tolerated_low_confidence(0.1) benign(0.01) TCGA-16-1045-01 1 238053168 238053168 T A ZP4 Silent p.L133L 0.11 TCGA-16-1045-01 1 46972778 46972778 G A DMBX1 Silent p.Q32Q 0.35 TCGA-16-1045-01 1 52981638 52981638 C G ZCCHC11 Missense_Mutation p.L269F 0.03 deleterious(0) probably_damaging(0.945) TCGA-16-1045-01 1 70477511 70477511 T C LRRC7 Missense_Mutation p.C308R 0.28 tolerated(0.35) probably_damaging(0.996) TCGA-16-1045-01 20 18534935 18534935 C A SEC23B Missense_Mutation p.F683L 0.26 tolerated(0.11) benign(0.163) TCGA-16-1045-01 20 48503378 48503378 C T SLC9A8 Silent p.F543F 0.10 TCGA-16-1045-01 21 39580451 39580451 C T DSCR10 RNA 0.14 TCGA-16-1045-01 21 40571510 40571510 G T BRWD1 Nonsense_Mutation p.S1611* 0.35 TCGA-16-1045-01 2 130877801 130877801 G T POTEF Missense_Mutation p.N96K 0.06 deleterious_low_confidence(0.01) benign(0.009) TCGA-16-1045-01 2 131976263 131976263 C A POTEE Missense_Mutation p.N96K 0.11 deleterious_low_confidence(0.01) benign(0) TCGA-16-1045-01 2 135893152 135893155 GAAA - RAB3GAP1 Frame_Shift_Del p.K527Rfs*34 0.30 TCGA-16-1045-01 2 179500424 179500424 A - TTN Frame_Shift_Del p.L13876Rfs*2 0.38 TCGA-16-1045-01 2 191894494 191894494 G A STAT4 3'UTR 0.04 TCGA-16-1045-01 2 207988812 207988812 G A KLF7 Missense_Mutation p.S140L 0.38 tolerated(0.24) probably_damaging(0.943) TCGA-16-1045-01 2 225666723 225666723 G A DOCK10 Nonsense_Mutation p.Q1435* 0.29 TCGA-16-1045-01 2 241556394 241556394 C T GPR35 Intron 0.36 TCGA-16-1045-01 2 95814853 95814853 A G ZNF514 3'UTR 0.10 TCGA-16-1045-01 3 111632476 111632476 G A PHLDB2 Missense_Mutation p.R549Q 0.12 tolerated(0.27) benign(0.095) TCGA-16-1045-01 3 135980854 135980854 G A PCCB Missense_Mutation p.A184T 0.50 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-16-1045-01 3 168845829 168845829 G A MECOM Silent p.C87C 0.31 TCGA-16-1045-01 3 195498599 195498599 C T MUC4 Missense_Mutation p.R4389Q 0.33 benign(0.042) TCGA-16-1045-01 3 30885739 30885739 T A GADL1 Missense_Mutation p.E250V 0.32 tolerated(0.09) benign(0.011) TCGA-16-1045-01 3 3139898 3139898 T C IL5RA Silent p.S148S 0.08 TCGA-16-1045-01 3 58135696 58135696 G A FLNB Missense_Mutation p.V2102I 0.11 tolerated(1) probably_damaging(0.998) TCGA-16-1045-01 4 108831540 108831540 C T SGMS2 Missense_Mutation p.S310F 0.09 deleterious(0) possibly_damaging(0.51) TCGA-16-1045-01 4 141545490 141545490 C T TBC1D9 Silent p.T984T 0.23 TCGA-16-1045-01 4 48486116 48486116 G A SLC10A4 Missense_Mutation p.G180S 0.29 deleterious(0) probably_damaging(1) TCGA-16-1045-01 4 69184554 69184554 C A YTHDC1 Nonsense_Mutation p.E571* 0.28 TCGA-16-1045-01 5 1225635 1225635 G A SLC6A18 Missense_Mutation p.G15R 0.21 tolerated(0.43) benign(0.354) TCGA-16-1045-01 5 158523369 158523369 G T EBF1 Missense_Mutation p.Q113K 0.35 deleterious(0.01) possibly_damaging(0.806) TCGA-16-1045-01 5 77784877 77784877 C T LHFPL2 Missense_Mutation p.G177E 0.24 deleterious(0.04) possibly_damaging(0.869) TCGA-16-1045-01 6 24666809 24666809 C T TDP2 Missense_Mutation p.V66M 0.25 tolerated(0.38) benign(0.021) TCGA-16-1045-01 6 34839664 34839664 G A UHRF1BP1 Missense_Mutation p.V1387M 0.37 tolerated(0.16) benign(0.024) TCGA-16-1045-01 6 41196175 41196175 G A TREML4 Missense_Mutation p.G4S 0.27 tolerated_low_confidence(0.17) benign(0.011) TCGA-16-1045-01 7 100175848 100175848 G A LRCH4 Silent p.Y294Y 0.11 TCGA-16-1045-01 7 21941937 21941937 C G CDCA7L 3'UTR 0.06 TCGA-16-1045-01 7 2255803 2255803 G A MAD1L1 Silent p.S266S 0.07 TCGA-16-1045-01 7 37172811 37172811 G A ELMO1 Missense_Mutation p.T372M 0.26 tolerated(0.3) benign(0.219) TCGA-16-1045-01 7 50596925 50596925 A G DDC Missense_Mutation p.V184A 0.23 deleterious(0.01) possibly_damaging(0.761) TCGA-16-1045-01 7 55221743 55221743 A C EGFR Missense_Mutation p.T263P 0.91 tolerated(0.19) possibly_damaging(0.826) TCGA-16-1045-01 7 81589046 81589046 C T CACNA2D1 Silent p.A1022A 0.46 TCGA-16-1045-01 7 87214993 87214993 G A ABCB1 Missense_Mutation p.R41C 0.05 deleterious(0.01) probably_damaging(0.994) TCGA-16-1045-01 7 87280179 87280179 C A RUNDC3B Missense_Mutation p.T55K 0.16 deleterious(0.01) possibly_damaging(0.829) TCGA-16-1045-01 7 94937424 94937424 A T PON1 Silent p.G199G 0.14 TCGA-16-1045-01 7 959664 959664 C T ADAP1 Missense_Mutation p.R110Q 0.10 deleterious(0) probably_damaging(0.95) TCGA-16-1045-01 8 145623823 145623823 G A CPSF1 Missense_Mutation p.T588M 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-16-1045-01 8 145745327 145745327 G A LRRC14 Missense_Mutation p.R73H 0.13 tolerated(0.07) possibly_damaging(0.83) TCGA-16-1045-01 9 2643641 2643641 C T VLDLR Silent p.C278C 0.06 TCGA-16-1045-01 9 71395730 71395730 T C FAM122A Missense_Mutation p.F217S 0.43 tolerated(0.09) benign(0.236) TCGA-16-1045-01 9 94172272 94172272 C T NFIL3 Missense_Mutation p.G249R 0.41 tolerated(0.05) probably_damaging(0.99) TCGA-16-1045-01 X 100511129 100511129 C T DRP2 Missense_Mutation p.R757W 0.20 deleterious(0) probably_damaging(0.977) TCGA-16-1045-01 X 118145848 118145848 T A LONRF3 Missense_Mutation p.F575I 0.26 deleterious(0) probably_damaging(0.999) TCGA-16-1045-01 X 119410766 119410766 C T TMEM255A Missense_Mutation p.A241T 0.26 deleterious(0) probably_damaging(0.999) TCGA-16-1045-01 X 120181970 120181970 G A GLUD2 Silent p.T144T 0.21 TCGA-16-1045-01 X 128701326 128701326 C A OCRL Missense_Mutation p.D484E 0.12 deleterious(0) probably_damaging(0.997) TCGA-16-1045-01 X 128887224 128887224 C T XPNPEP2 Silent p.H369H 0.13 TCGA-16-1045-01 X 134989538 134989538 T G SAGE1 Missense_Mutation p.V315G 0.21 deleterious(0) benign(0.069) TCGA-16-1045-01 X 154721256 154721256 G - TMLHE Frame_Shift_Del p.C403Afs*3 0.18 TCGA-16-1045-01 X 53612010 53612010 G A HUWE1 Nonsense_Mutation p.R1655* 0.28 TCGA-16-1045-01 X 70777507 70777507 C A OGT Missense_Mutation p.N529K 0.29 tolerated(0.18) benign(0.026) TCGA-16-1048-01 10 118307871 118307871 G A PNLIP Splice_Site p.X68_splice 0.40 TCGA-16-1048-01 10 118728202 118728202 G T KIAA1598 Silent p.R45R 0.38 TCGA-16-1048-01 10 81065892 81065892 G T ZMIZ1 Missense_Mutation p.C820F 0.06 probably_damaging(0.952) TCGA-16-1048-01 11 4045179 4045179 G A STIM1 Missense_Mutation p.S116N 0.28 deleterious(0) benign(0.276) TCGA-16-1048-01 11 55861310 55861310 T C OR8I2 Missense_Mutation p.F176S 0.04 deleterious(0) probably_damaging(0.999) TCGA-16-1048-01 11 63137793 63137793 C T SLC22A9 Missense_Mutation p.R89C 0.35 deleterious(0.02) benign(0.082) TCGA-16-1048-01 11 65714723 65714723 C T TSGA10IP RNA 0.07 TCGA-16-1048-01 11 67430594 67430594 C T ALDH3B2 3'UTR 0.25 TCGA-16-1048-01 11 75439862 75439862 C T MOGAT2 Silent p.F226F 0.28 TCGA-16-1048-01 11 76990356 76990356 G A GDPD4 Silent p.L48L 0.38 TCGA-16-1048-01 11 94532995 94532995 G A AMOTL1 Silent p.A213A 0.10 TCGA-16-1048-01 12 117669899 117669899 C T NOS1 Silent p.P1125P 0.24 TCGA-16-1048-01 12 50355944 50355944 G A AQP5 Silent p.A48A 0.23 TCGA-16-1048-01 13 115090500 115090500 C G CHAMP1 Missense_Mutation p.P395A 0.32 deleterious(0.01) probably_damaging(0.999) TCGA-16-1048-01 13 37269069 37269069 C A SERTM1 5'UTR 0.18 TCGA-16-1048-01 13 45148388 45148388 G T TSC22D1 Missense_Mutation p.S608Y 0.20 deleterious(0) possibly_damaging(0.794) TCGA-16-1048-01 14 101459591 101459591 C T SNORD114-31 RNA 0.03 TCGA-16-1048-01 14 105407228 105407228 G C AHNAK2 Missense_Mutation p.P4854A 0.23 benign(0.06) TCGA-16-1048-01 14 107282918 107282918 C T IGHV7-81 Silent p.G75G 0.05 TCGA-16-1048-01 14 57268285 57268285 G T OTX2 3'UTR 0.33 TCGA-16-1048-01 14 96875256 96875256 C T AK7 Missense_Mutation p.A159V 0.23 deleterious(0) possibly_damaging(0.734) TCGA-16-1048-01 15 23932352 23932352 T A NDN Missense_Mutation p.S5C 0.32 deleterious_low_confidence(0) possibly_damaging(0.707) TCGA-16-1048-01 15 30659651 30659651 G A CHRFAM7A Silent p.H230H 0.13 TCGA-16-1048-01 15 56735891 56735893 TCT - MNS1 In_Frame_Del p.E282del 0.17 TCGA-16-1048-01 15 74884098 74884098 C T ARID3B Missense_Mutation p.R455C 0.28 deleterious(0) probably_damaging(0.999) TCGA-16-1048-01 15 80263519 80263519 A G BCL2A1 5'UTR 0.12 TCGA-16-1048-01 16 20570670 20570670 C T ACSM2B Missense_Mutation p.A93T 0.28 tolerated(0.31) benign(0.069) TCGA-16-1048-01 16 2812074 2812074 G A SRRM2 Silent p.R515R 0.26 TCGA-16-1048-01 17 36499092 36499092 G A GPR179 Missense_Mutation p.T194I 0.29 tolerated(0.05) benign(0.013) TCGA-16-1048-01 17 58740521 58740521 G T PPM1D Nonsense_Mutation p.E476* 0.25 TCGA-16-1048-01 17 72588368 72588368 T G C17orf77 Silent p.G61G 0.38 TCGA-16-1048-01 17 7989533 7989533 G T ALOX12B Silent p.G51G 0.14 TCGA-16-1048-01 18 56587377 56587377 G T ZNF532 Nonsense_Mutation p.E620* 0.32 TCGA-16-1048-01 18 58039346 58039346 C T MC4R Missense_Mutation p.M79I 0.26 deleterious(0) probably_damaging(0.968) TCGA-16-1048-01 19 11759238 11759238 G A ZNF833P RNA 0.26 TCGA-16-1048-01 19 41515999 41515999 G A CYP2B6 Missense_Mutation p.R308H 0.36 deleterious(0.02) possibly_damaging(0.533) TCGA-16-1048-01 19 46375889 46375889 G A FOXA3 Missense_Mutation p.R209H 0.36 deleterious(0) probably_damaging(0.998) TCGA-16-1048-01 19 5455431 5455431 G C ZNRF4 5'UTR 0.28 TCGA-16-1048-01 19 5832254 5832254 G C FUT6 Missense_Mutation p.H109D 0.18 deleterious(0) probably_damaging(1) TCGA-16-1048-01 1 104115707 104115710 TAAT - AMY2B Frame_Shift_Del p.N115Ifs*7 0.15 TCGA-16-1048-01 1 158261121 158261121 T - CD1C Frame_Shift_Del p.L87Yfs*9 0.27 TCGA-16-1048-01 1 158669789 158669789 G A OR6K2 Silent p.S218S 0.34 TCGA-16-1048-01 1 205042816 205042816 C T CNTN2 Missense_Mutation p.R1016C 0.20 tolerated(0.13) benign(0) TCGA-16-1048-01 1 53370462 53370462 C T ECHDC2 Silent p.A186A 0.33 TCGA-16-1048-01 20 26084125 26084125 T C NCOR1P1 RNA 0.20 TCGA-16-1048-01 20 869018 869018 A G ANGPT4 Missense_Mutation p.L177P 0.31 deleterious(0) probably_damaging(0.986) TCGA-16-1048-01 21 30693606 30693606 C G BACH1 Missense_Mutation p.S2C 0.30 deleterious(0) possibly_damaging(0.536) TCGA-16-1048-01 21 39493392 39493392 G A DSCR4 5'UTR 0.21 TCGA-16-1048-01 21 46078019 46078019 G A KRTAP12-3 Silent p.T41T 0.28 TCGA-16-1048-01 22 44581720 44581720 C T PARVG Missense_Mutation p.R38W 0.32 deleterious(0.04) possibly_damaging(0.696) TCGA-16-1048-01 2 103040791 103040791 C T IL18RAP Missense_Mutation p.L166F 0.32 tolerated(0.05) benign(0.443) TCGA-16-1048-01 2 112865416 112865416 G A TMEM87B Missense_Mutation p.V526I 0.24 deleterious(0.05) benign(0.153) TCGA-16-1048-01 2 163005628 163005628 G A GCG Missense_Mutation p.R21C 0.29 tolerated(0.18) possibly_damaging(0.487) TCGA-16-1048-01 2 171243715 171243715 T C MYO3B Missense_Mutation p.F492L 0.05 deleterious(0) probably_damaging(1) TCGA-16-1048-01 2 182358131 182358131 G A ITGA4 Silent p.S411S 0.26 TCGA-16-1048-01 2 192141643 192141643 A T MYO1B Missense_Mutation p.T8S 0.30 tolerated(0.33) benign(0.003) TCGA-16-1048-01 2 228560683 228560683 T C SLC19A3 Missense_Mutation p.Y365C 0.29 tolerated(0.06) possibly_damaging(0.588) TCGA-16-1048-01 2 242004746 242004746 G A SNED1 Silent p.E915E 0.36 TCGA-16-1048-01 2 32727897 32727897 A T BIRC6 Missense_Mutation p.L3081F 0.27 probably_damaging(0.995) TCGA-16-1048-01 2 66798573 66798573 G C MEIS1 3'UTR 0.20 TCGA-16-1048-01 2 74477637 74477637 C T SLC4A5 Missense_Mutation p.G496S 0.23 deleterious(0) probably_damaging(0.995) TCGA-16-1048-01 2 84517939 84517939 C T FUNDC2P2 RNA 0.19 TCGA-16-1048-01 3 130159541 130159541 G A COL6A5 Missense_Mutation p.R2120H 0.21 tolerated(0.79) benign(0) TCGA-16-1048-01 3 178917478 178917478 G A PIK3CA Missense_Mutation p.G118D 0.55 tolerated(0.05) possibly_damaging(0.704) TCGA-16-1048-01 3 27478926 27478926 T G SLC4A7 Missense_Mutation p.E118D 0.29 deleterious(0) benign(0.309) TCGA-16-1048-01 4 110384778 110384778 G A SEC24B Silent p.A285A 0.06 TCGA-16-1048-01 4 186299262 186299262 A C LRP2BP Missense_Mutation p.F27V 0.30 tolerated(0.52) benign(0.001) TCGA-16-1048-01 4 46930475 46930475 C T GABRA4 Missense_Mutation p.V478M 0.35 tolerated_low_confidence(0.19) benign(0.06) TCGA-16-1048-01 5 127728993 127728993 G T FBN2 Missense_Mutation p.P434T 0.28 deleterious(0.02) benign(0.081) TCGA-16-1048-01 5 140774290 140774290 C T PCDHGA8 Missense_Mutation p.A637V 0.20 deleterious_low_confidence(0.02) benign(0.302) TCGA-16-1048-01 5 68737366 68737366 C T MARVELD2 Missense_Mutation p.T521I 0.30 deleterious(0) possibly_damaging(0.892) TCGA-16-1048-01 6 112496666 112496666 C A LAMA4 Missense_Mutation p.M402I 0.03 tolerated(0.2) benign(0.209) TCGA-16-1048-01 6 116757126 116757126 G A DSE Missense_Mutation p.V499M 0.39 deleterious(0.02) benign(0.004) TCGA-16-1048-01 6 125404063 125404063 C T RNF217 3'UTR 0.21 TCGA-16-1048-01 6 39272395 39272395 C T KCNK17 Missense_Mutation p.R130H 0.18 deleterious(0.02) probably_damaging(0.997) TCGA-16-1048-01 6 43109453 43109453 C T PTK7 Missense_Mutation p.H564Y 0.39 deleterious(0) possibly_damaging(0.794) TCGA-16-1048-01 6 54191661 54191661 C T TINAG Missense_Mutation p.R191C 0.28 deleterious(0) probably_damaging(0.91) TCGA-16-1048-01 6 54254704 54254704 C T TINAG Missense_Mutation p.T471M 0.32 deleterious(0.03) probably_damaging(0.944) TCGA-16-1048-01 6 7580369 7580369 G A DSP Missense_Mutation p.A1316T 0.35 probably_damaging(0.995) TCGA-16-1048-01 6 91226312 91226312 C A MAP3K7 Nonsense_Mutation p.E577* 0.08 TCGA-16-1048-01 7 100730794 100730794 C T TRIM56 Silent p.P67P 0.22 TCGA-16-1048-01 7 103159906 103159906 G T RELN Missense_Mutation p.Q2576K 0.19 deleterious(0) probably_damaging(0.955) TCGA-16-1048-01 7 143175728 143175728 G A TAS2R41 Missense_Mutation p.A255T 0.16 tolerated(0.52) benign(0.013) TCGA-16-1048-01 7 45701759 45701759 G T ADCY1 Missense_Mutation p.M517I 0.05 deleterious_low_confidence(0.02) benign(0.094) TCGA-16-1048-01 7 55221716 55221716 T A EGFR Missense_Mutation p.F254I 0.95 deleterious(0) probably_damaging(0.996) TCGA-16-1048-01 7 71135089 71135089 G A WBSCR17 Missense_Mutation p.G467R 0.22 deleterious(0.01) probably_damaging(1) TCGA-16-1048-01 7 7412801 7412801 T C COL28A1 Silent p.K912K 0.13 TCGA-16-1048-01 7 92733048 92733048 C T SAMD9 Missense_Mutation p.R788H 0.20 tolerated(1) benign(0) TCGA-16-1048-01 8 1649565 1649565 G A DLGAP2 Missense_Mutation p.R974Q 0.29 deleterious(0) probably_damaging(0.999) TCGA-16-1048-01 8 24199150 24199150 G A ADAM28 Silent p.S570S 0.28 TCGA-16-1048-01 X 155231094 155231094 G C IL9R Intron 0.23 TCGA-16-1048-01 X 53970579 53970579 C T PHF8 Silent p.K915K 0.39 TCGA-16-1048-01 X 54784130 54784130 G A ITIH6 Nonsense_Mutation p.Q793* 0.58 TCGA-19-1390-01 10 107023220 107023220 T - SORCS3 3'UTR 0.35 TCGA-19-1390-01 10 117061475 117061475 C T ATRNL1 Nonsense_Mutation p.R914* 0.43 TCGA-19-1390-01 10 30315264 30315264 C T KIAA1462 Missense_Mutation p.M1271I 0.46 tolerated(0.08) possibly_damaging(0.876) TCGA-19-1390-01 10 43604497 43604497 A T RET Missense_Mutation p.N361I 0.45 deleterious(0) benign(0.203) TCGA-19-1390-01 10 47000008 47000008 G A GPRIN2 Silent p.P376P 0.18 TCGA-19-1390-01 11 123901051 123901051 C G OR10G8 Missense_Mutation p.A241G 0.58 tolerated(0.36) possibly_damaging(0.845) TCGA-19-1390-01 11 32119964 32119964 A G RCN1 Missense_Mutation p.R173G 0.46 deleterious(0) probably_damaging(0.991) TCGA-19-1390-01 11 4870245 4870245 C T OR51S1 Missense_Mutation p.R65H 0.34 deleterious(0.03) probably_damaging(0.967) TCGA-19-1390-01 11 5246799 5246804 AATAGA - HBB 3'UTR 0.54 TCGA-19-1390-01 11 55340233 55340233 C T OR4C16 Silent p.V210V 0.49 TCGA-19-1390-01 11 55587827 55587827 C A OR5D18 Missense_Mutation p.T241N 0.50 deleterious(0) probably_damaging(1) TCGA-19-1390-01 11 58295179 58295179 A G LPXN Silent p.F308F 0.09 TCGA-19-1390-01 11 65111221 65111221 C A DPF2 Silent p.I157I 0.16 TCGA-19-1390-01 11 866600 866600 A G TSPAN4 Silent p.Q229Q 0.21 TCGA-19-1390-01 11 88911588 88911588 A G TYR Missense_Mutation p.Y156C 0.29 deleterious(0.01) possibly_damaging(0.897) TCGA-19-1390-01 12 12765120 12765120 A C CREBL2 Missense_Mutation p.K5T 0.56 deleterious_low_confidence(0.04) benign(0.309) TCGA-19-1390-01 12 41410534 41410534 A T CNTN1 Silent p.A745A 0.26 TCGA-19-1390-01 12 64491111 64491111 C T SRGAP1 Missense_Mutation p.P590L 0.61 deleterious(0) probably_damaging(0.969) TCGA-19-1390-01 12 70949684 70949684 C T PTPRB Silent p.E1653E 0.20 TCGA-19-1390-01 13 109859100 109859100 T C MYO16 Silent p.P1831P 0.20 TCGA-19-1390-01 13 25671682 25671682 G A PABPC3 Missense_Mutation p.R449H 0.32 tolerated(0.51) benign(0.002) TCGA-19-1390-01 13 26273468 26273468 C T ATP8A2 Missense_Mutation p.A790V 0.43 tolerated(0.25) possibly_damaging(0.599) TCGA-19-1390-01 13 51530575 51530575 G C RNASEH2B Missense_Mutation p.G302R 0.25 tolerated(0.05) possibly_damaging(0.824) TCGA-19-1390-01 13 61985658 61985658 T C PCDH20 Silent p.R858R 0.19 TCGA-19-1390-01 15 20876531 20876531 C A NBEAP1 RNA 0.36 TCGA-19-1390-01 15 41146113 41146113 C T SPINT1 Missense_Mutation p.A316V 0.05 tolerated(0.67) benign(0) TCGA-19-1390-01 15 42364081 42364081 G A PLA2G4D Silent p.V488V 0.58 TCGA-19-1390-01 15 50211036 50211036 C A ATP8B4 Nonsense_Mutation p.E679* 0.28 TCGA-19-1390-01 15 58925426 58925426 G A ADAM10 Missense_Mutation p.A382V 0.06 deleterious(0) probably_damaging(0.996) TCGA-19-1390-01 15 72700088 72700088 G A TMEM202 Missense_Mutation p.V226I 0.54 tolerated(0.29) benign(0.017) TCGA-19-1390-01 15 75305137 75305137 C T SCAMP5 Missense_Mutation p.L43F 0.43 deleterious(0.04) probably_damaging(0.993) TCGA-19-1390-01 16 19514711 19514711 G A GDE1 3'UTR 0.57 TCGA-19-1390-01 16 30198720 30198720 C T CORO1A Silent p.H218H 0.57 TCGA-19-1390-01 16 31471307 31471307 C T ARMC5 Silent p.G154G 0.37 TCGA-19-1390-01 16 84203678 84203678 C T DNAAF1 Missense_Mutation p.T415I 0.19 tolerated(0.17) benign(0.075) TCGA-19-1390-01 17 10419368 10419368 T A MYH1 Missense_Mutation p.N127I 0.67 deleterious(0) probably_damaging(0.948) TCGA-19-1390-01 17 31341024 31341024 G T ASIC2 Missense_Mutation p.L551M 0.74 tolerated(0.1) probably_damaging(0.921) TCGA-19-1390-01 17 37866667 37866667 G A ERBB2 Silent p.T278T 0.62 TCGA-19-1390-01 17 38949404 38949404 T G KRT28 Intron 0.38 TCGA-19-1390-01 17 7578268 7578268 A C TP53 Missense_Mutation p.L194R 0.14 deleterious(0) probably_damaging(1) TCGA-19-1390-01 17 7578542 7578542 G A TP53 Missense_Mutation p.L130F 0.59 deleterious(0) probably_damaging(1) TCGA-19-1390-01 17 76457727 76457727 C T DNAH17 Missense_Mutation p.A3066T 0.77 benign(0.221) TCGA-19-1390-01 17 9808118 9808118 A G RCVRN Missense_Mutation p.M127T 0.25 tolerated(0.72) benign(0.001) TCGA-19-1390-01 18 29046572 29046572 C T DSG3 Silent p.L497L 0.46 TCGA-19-1390-01 18 29055684 29055684 G A DSG3 Missense_Mutation p.A821T 0.58 tolerated(0.23) benign(0.005) TCGA-19-1390-01 18 61232706 61232706 C T SERPINB12 Missense_Mutation p.T225M 0.26 tolerated(0.19) benign(0.009) TCGA-19-1390-01 19 12543219 12543219 G T ZNF443 Missense_Mutation p.Q55K 0.37 tolerated(0.09) benign(0.146) TCGA-19-1390-01 19 14991689 14991689 C A OR7A17 Missense_Mutation p.S160I 0.33 deleterious_low_confidence(0.04) benign(0.25) TCGA-19-1390-01 19 22155210 22155210 G T ZNF208 Missense_Mutation p.L876I 0.29 deleterious(0.02) unknown(0) TCGA-19-1390-01 19 35801000 35801000 C T MAG Silent p.R485R 0.23 TCGA-19-1390-01 19 49557640 49557640 G A CGB7 Nonsense_Mutation p.Q136* 0.41 TCGA-19-1390-01 19 53304049 53304049 G T ZNF28 Missense_Mutation p.T350N 0.51 deleterious(0.01) probably_damaging(0.991) TCGA-19-1390-01 19 55451268 55451268 T C NLRP7 Missense_Mutation p.R307G 0.34 tolerated(0.07) benign(0.03) TCGA-19-1390-01 19 5909016 5909016 G A VMAC Missense_Mutation p.E125K 0.33 deleterious(0) probably_damaging(0.994) TCGA-19-1390-01 19 8966765 8966765 C T MUC16 Silent p.S14396S 0.24 TCGA-19-1390-01 19 9057573 9057573 G A MUC16 Missense_Mutation p.T9958I 0.29 unknown(0) TCGA-19-1390-01 1 144854614 144854614 C T PDE4DIP Missense_Mutation p.V2286I 0.18 tolerated(0.28) benign(0.007) TCGA-19-1390-01 1 152760044 152760044 C A LCE1E Missense_Mutation p.P90H 0.56 tolerated_low_confidence(0.86) unknown(0) TCGA-19-1390-01 1 163044110 163044110 G A RGS4 Splice_Site p.X224_splice 0.04 TCGA-19-1390-01 1 164816025 164816025 C G PBX1 3'UTR 0.63 TCGA-19-1390-01 1 170928687 170928687 T G MROH9 Silent p.L79L 0.21 TCGA-19-1390-01 1 181693656 181693656 G A CACNA1E Missense_Mutation p.A709T 0.39 deleterious(0) benign(0.141) TCGA-19-1390-01 1 207300203 207300203 T C C4BPA Silent p.D284D 0.50 TCGA-19-1390-01 1 237789020 237789020 C T RYR2 Missense_Mutation p.R2028C 0.65 possibly_damaging(0.893) TCGA-19-1390-01 1 248814164 248814164 C T OR2T27 Missense_Mutation p.V8M 0.20 tolerated(0.28) benign(0.003) TCGA-19-1390-01 1 38227511 38227511 C T EPHA10 Missense_Mutation p.R139H 0.84 tolerated(0.11) possibly_damaging(0.855) TCGA-19-1390-01 1 43905598 43905598 G A SZT2 Silent p.G2306G 0.80 TCGA-19-1390-01 1 47533168 47533168 G T CYP4Z1 Missense_Mutation p.E2D 0.18 tolerated(0.07) possibly_damaging(0.636) TCGA-19-1390-01 1 57535099 57535099 C T DAB1 Splice_Site p.X200_splice 0.80 TCGA-19-1390-01 1 74665467 74665467 C T FPGT-TNNI3K Missense_Mutation p.L81F 0.75 deleterious_low_confidence(0.01) benign(0.001) TCGA-19-1390-01 1 76877752 76877752 C T ST6GALNAC3 Silent p.G91G 0.81 TCGA-19-1390-01 20 31022566 31022566 C A ASXL1 Missense_Mutation p.P684H 0.09 tolerated(0.39) possibly_damaging(0.838) TCGA-19-1390-01 20 31630672 31630672 C A BPIFB6 Missense_Mutation p.P414T 0.53 deleterious(0) probably_damaging(0.999) TCGA-19-1390-01 20 51870661 51870661 G A TSHZ2 Missense_Mutation p.A222T 0.15 deleterious(0) probably_damaging(0.999) TCGA-19-1390-01 21 30949385 30949385 C G GRIK1 Missense_Mutation p.E677Q 0.46 deleterious(0) probably_damaging(0.998) TCGA-19-1390-01 21 45949800 45949800 T C TSPEAR Missense_Mutation p.D224G 0.41 deleterious(0.01) probably_damaging(0.931) TCGA-19-1390-01 2 113763644 113763644 G A IL36A Missense_Mutation p.R35K 0.30 tolerated(0.12) benign(0.059) TCGA-19-1390-01 2 138420998 138420998 T C THSD7B Missense_Mutation p.S1505P 0.20 tolerated(0.13) unknown(0) TCGA-19-1390-01 2 168106391 168106391 G A XIRP2 Missense_Mutation p.R2830Q 0.30 benign(0.145) TCGA-19-1390-01 2 179431720 179431720 A G TTN Missense_Mutation p.M26380T 0.32 TCGA-19-1390-01 2 179456867 179456867 C T TTN Missense_Mutation p.A19922T 0.32 TCGA-19-1390-01 2 217329391 217329391 G A SMARCAL1 Splice_Site p.X714_splice 0.57 TCGA-19-1390-01 2 24929877 24929877 C T NCOA1 Missense_Mutation p.S513L 0.28 tolerated(0.08) benign(0.019) TCGA-19-1390-01 2 29268218 29268218 T A FAM179A Silent p.A888A 0.23 TCGA-19-1390-01 2 38302345 38302345 C T CYP1B1 Missense_Mutation p.A63T 0.44 deleterious(0.04) probably_damaging(0.962) TCGA-19-1390-01 2 73651879 73651879 T A ALMS1 Silent p.A362A 0.27 TCGA-19-1390-01 2 74747143 74747143 C T DQX1 Missense_Mutation p.R505H 0.25 tolerated(0.47) benign(0.004) TCGA-19-1390-01 2 90249266 90249266 C A IGKV1D-43 Silent p.S74S 0.67 TCGA-19-1390-01 2 99811636 99811636 G C MRPL30 Missense_Mutation p.V113L 0.26 deleterious(0.01) possibly_damaging(0.795) TCGA-19-1390-01 3 108778663 108778663 C A MORC1 Nonsense_Mutation p.E341* 0.33 TCGA-19-1390-01 3 121410932 121410932 C T GOLGB1 Missense_Mutation p.E2427K 0.47 possibly_damaging(0.485) TCGA-19-1390-01 3 122004023 122004023 C T CASR Silent p.N1084N 0.38 TCGA-19-1390-01 3 46720751 46720751 G A ALS2CL Silent p.D525D 0.41 TCGA-19-1390-01 4 153809448 153809448 G A ARFIP1 Missense_Mutation p.E319K 0.46 deleterious(0) probably_damaging(0.961) TCGA-19-1390-01 4 156764950 156764950 G A ASIC5 Silent p.F248F 0.40 TCGA-19-1390-01 4 162459448 162459448 A G FSTL5 Silent p.N394N 0.46 TCGA-19-1390-01 4 38798595 38798595 G A TLR1 Missense_Mutation p.R620W 0.45 tolerated(0.21) probably_damaging(0.939) TCGA-19-1390-01 4 48069468 48069468 A G TXK 3'UTR 0.44 TCGA-19-1390-01 4 55138611 55138611 G A PDGFRA Missense_Mutation p.G430R 0.73 tolerated(0.82) benign(0.02) TCGA-19-1390-01 4 55138664 55138664 G C PDGFRA Missense_Mutation p.W447C 0.69 deleterious(0) possibly_damaging(0.759) TCGA-19-1390-01 5 112174282 112174282 T C APC Silent p.Y997Y 0.47 TCGA-19-1390-01 5 134782041 134782041 C T TIFAB 3'UTR 0.44 TCGA-19-1390-01 5 179201677 179201677 C T MAML1 Silent p.G950G 0.40 TCGA-19-1390-01 5 2749779 2749779 G A IRX2 Silent p.D124D 0.45 TCGA-19-1390-01 5 41049390 41049390 G A MROH2B Missense_Mutation p.T498I 0.44 tolerated(0.18) possibly_damaging(0.576) TCGA-19-1390-01 5 70813215 70813215 G A BDP1 Missense_Mutation p.E1643K 0.42 deleterious(0.03) possibly_damaging(0.819) TCGA-19-1390-01 5 78612055 78612055 T C JMY Silent p.L964L 0.46 TCGA-19-1390-01 5 78697771 78697771 T C HOMER1 Missense_Mutation p.K212R 0.47 tolerated(0.17) benign(0.043) TCGA-19-1390-01 5 95234136 95234136 G T ELL2 Missense_Mutation p.L445I 0.22 tolerated(0.36) benign(0.003) TCGA-19-1390-01 6 12164550 12164550 T C HIVEP1 Silent p.V2671V 0.44 TCGA-19-1390-01 6 26156599 26156599 C T HIST1H1E 5'UTR 0.51 TCGA-19-1390-01 6 2685573 2685573 C A MYLK4 Missense_Mutation p.D168Y 0.44 deleterious(0) probably_damaging(0.996) TCGA-19-1390-01 6 32147882 32147882 G A RNF5 Missense_Mutation p.E142K 0.32 tolerated(0.1) possibly_damaging(0.715) TCGA-19-1390-01 6 33133402 33133402 C A COL11A2 Missense_Mutation p.R1472S 0.39 unknown(0) TCGA-19-1390-01 6 41654875 41654875 G A TFEB Missense_Mutation p.R254C 0.36 deleterious(0) probably_damaging(0.995) TCGA-19-1390-01 6 43273549 43273549 G A CRIP3 3'UTR 0.42 TCGA-19-1390-01 7 100730392 100730392 C G TRIM56 5'UTR 0.20 TCGA-19-1390-01 7 107217955 107217955 T G DUS4L Missense_Mutation p.S302A 0.28 tolerated(0.15) benign(0.014) TCGA-19-1390-01 7 115889257 115889257 T A TES Silent p.A99A 0.17 TCGA-19-1390-01 7 126542691 126542691 C T GRM8 Missense_Mutation p.R354Q 0.30 tolerated(0.17) possibly_damaging(0.794) TCGA-19-1390-01 7 137597659 137597659 C G CREB3L2 Intron 0.32 TCGA-19-1390-01 7 150840450 150840450 C T AGAP3 Missense_Mutation p.R766W 0.26 deleterious(0) probably_damaging(0.998) TCGA-19-1390-01 7 25182279 25182279 G A C7orf31 Missense_Mutation p.S280L 0.21 deleterious(0) probably_damaging(0.998) TCGA-19-1390-01 7 38816326 38816326 C T VPS41 Missense_Mutation p.D279N 0.22 tolerated(0.72) benign(0.081) TCGA-19-1390-01 7 43917540 43917540 C T URGCP Missense_Mutation p.E508K 0.16 deleterious(0.02) probably_damaging(0.94) TCGA-19-1390-01 7 53103790 53103790 G A POM121L12 Silent p.A142A 0.37 TCGA-19-1390-01 7 53103915 53103915 A T POM121L12 Missense_Mutation p.Q184L 0.10 deleterious(0.03) benign(0.316) TCGA-19-1390-01 8 55542970 55542970 A T RP1 3'UTR 0.29 TCGA-19-1390-01 8 62212806 62212806 T C CLVS1 Silent p.I140I 0.48 TCGA-19-1390-01 8 73982070 73982070 C T SBSPON Missense_Mutation p.R216H 0.35 tolerated(0.34) benign(0.092) TCGA-19-1390-01 9 138657034 138657034 G A KCNT1 Missense_Mutation p.R398Q 0.44 tolerated(0.07) benign(0.1) TCGA-19-1390-01 9 991047 991047 C T DMRT3 3'UTR 0.39 TCGA-19-1390-01 X 113949665 113949665 A G HTR2C Intron 0.67 TCGA-19-1390-01 X 128721074 128721074 A G OCRL Silent p.L745L 0.32 TCGA-19-1390-01 X 135593609 135593609 G T HTATSF1 Missense_Mutation p.G569C 0.35 deleterious_low_confidence(0.02) benign(0.086) TCGA-19-1390-01 X 139586804 139586804 C T SOX3 Missense_Mutation p.R141Q 0.30 deleterious(0) probably_damaging(0.986) TCGA-19-1390-01 X 149839946 149839946 C T MTM1 Missense_Mutation p.R564C 0.23 deleterious(0.02) probably_damaging(0.998) TCGA-19-1390-01 X 151128446 151128446 A G GABRE Missense_Mutation p.S217P 0.27 tolerated(0.08) probably_damaging(0.992) TCGA-19-1390-01 X 153033712 153033712 C T PLXNB3 Silent p.P388P 0.21 TCGA-19-1390-01 X 15582159 15582159 C T ACE2 Missense_Mutation p.R766K 0.25 tolerated_low_confidence(0.21) benign(0.032) TCGA-19-1390-01 X 21674007 21674007 C T KLHL34 Missense_Mutation p.E634K 0.30 tolerated_low_confidence(0.23) benign(0.133) TCGA-19-1390-01 X 39932304 39932304 G A BCOR Silent p.S765S 0.30 TCGA-19-1390-01 X 50653945 50653945 C T BMP15 Silent p.G54G 0.43 TCGA-19-1390-01 X 53230914 53230914 G A KDM5C Missense_Mutation p.R627C 0.33 deleterious(0) probably_damaging(0.994) TCGA-19-1390-01 X 63412206 63412206 T - AMER1 Frame_Shift_Del p.S321Afs*5 0.26 TCGA-19-1390-01 X 67731798 67731798 T A YIPF6 Missense_Mutation p.N55K 0.25 deleterious(0) benign(0.055) TCGA-19-1390-01 X 91133162 91133162 C A PCDH11X Missense_Mutation p.F641L 0.27 tolerated(0.2) possibly_damaging(0.823) TCGA-19-1787-01 10 102732900 102732900 C T SEMA4G Missense_Mutation p.R47W 0.77 deleterious(0) possibly_damaging(0.821) TCGA-19-1787-01 10 104164676 104164676 C T PSD Missense_Mutation p.R845Q 0.76 deleterious(0) possibly_damaging(0.865) TCGA-19-1787-01 10 104174924 104174925 CA - PSD Frame_Shift_Del p.V275Gfs*25 0.48 TCGA-19-1787-01 10 112641010 112641013 CTCT - PDCD4 Frame_Shift_Del p.L23Ffs*13 0.67 TCGA-19-1787-01 10 115609854 115609856 TCT - DCLRE1A In_Frame_Del p.E336del 0.66 TCGA-19-1787-01 10 124457437 124457437 G A C10orf120 Missense_Mutation p.R274W 0.75 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 10 126715016 126715016 C T CTBP2 Missense_Mutation p.G438E 0.76 deleterious_low_confidence(0) possibly_damaging(0.846) TCGA-19-1787-01 10 127697969 127697969 A - FANK1 Frame_Shift_Del p.K336Sfs*25 0.71 TCGA-19-1787-01 10 128851057 128851057 C T DOCK1 Missense_Mutation p.R751C 0.77 deleterious(0.01) benign(0.017) TCGA-19-1787-01 10 129183091 129183091 G A DOCK1 Missense_Mutation p.R1261Q 0.75 tolerated(0.38) possibly_damaging(0.602) TCGA-19-1787-01 10 131565100 131565100 G A MGMT Missense_Mutation p.V186M 0.60 tolerated(0.52) benign(0.083) TCGA-19-1787-01 10 133784237 133784237 C T BNIP3 Silent p.T148T 0.43 TCGA-19-1787-01 10 15161354 15161354 C T NMT2 Silent p.T386T 0.68 TCGA-19-1787-01 10 29762862 29762862 C T SVIL Missense_Mutation p.V1812I 0.77 tolerated(0.08) benign(0.217) TCGA-19-1787-01 10 37490228 37490228 G A ANKRD30A Missense_Mutation p.M892I 0.81 tolerated(1) benign(0) TCGA-19-1787-01 10 43292674 43292674 C T BMS1 Missense_Mutation p.T661M 0.66 deleterious(0.02) probably_damaging(0.999) TCGA-19-1787-01 10 48414157 48414157 G A GDF2 Silent p.C237C 0.35 TCGA-19-1787-01 10 49395234 49395234 C T FRMPD2 Splice_Site p.X756_splice 0.17 TCGA-19-1787-01 10 50530847 50530847 C T C10orf71 Missense_Mutation p.P86L 0.79 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 10 58118422 58118422 C A ZWINT Missense_Mutation p.E229D 0.76 tolerated(0.07) benign(0.003) TCGA-19-1787-01 10 65358963 65358963 C T REEP3 Nonsense_Mutation p.R113* 0.73 TCGA-19-1787-01 10 70143578 70143578 G A RUFY2 Nonsense_Mutation p.R341* 0.68 TCGA-19-1787-01 10 71851610 71851610 C T H2AFY2 Missense_Mutation p.T126M 0.75 deleterious(0.03) possibly_damaging(0.84) TCGA-19-1787-01 10 76790286 76790286 G A KAT6B Missense_Mutation p.A1902T 0.75 benign(0.257) TCGA-19-1787-01 10 78651416 78651416 G A KCNMA1 Missense_Mutation p.P1053L 0.70 deleterious(0) probably_damaging(0.994) TCGA-19-1787-01 10 79163692 79163692 G A KCNMA1 Silent p.V156V 0.68 TCGA-19-1787-01 10 79569335 79569335 G A DLG5 Silent p.D1539D 0.05 TCGA-19-1787-01 10 88703211 88703211 G A MMRN2 Missense_Mutation p.R444C 0.74 deleterious(0) probably_damaging(0.962) TCGA-19-1787-01 10 92509036 92509036 G A HTR7 Silent p.S285S 0.69 TCGA-19-1787-01 10 93621772 93621772 C T TNKS2 Missense_Mutation p.R1100W 0.69 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 10 96162374 96162374 G A TBC1D12 Missense_Mutation p.V2M 0.77 tolerated_low_confidence(0.19) benign(0.055) TCGA-19-1787-01 10 98173028 98173028 G A TLL2 Silent p.G323G 0.11 TCGA-19-1787-01 11 102269460 102269460 C T TMEM123 3'UTR 0.77 TCGA-19-1787-01 11 10500162 10500162 C T AMPD3 Missense_Mutation p.P113L 0.16 tolerated(0.09) possibly_damaging(0.676) TCGA-19-1787-01 11 108114817 108114817 T - ATM Frame_Shift_Del p.S214Pfs*16 0.33 TCGA-19-1787-01 11 113126681 113126681 C T NCAM1 Silent p.D686D 0.78 TCGA-19-1787-01 11 124789564 124789564 C A HEPACAM 3'UTR 0.55 TCGA-19-1787-01 11 1247925 1247925 C T MUC5B Missense_Mutation p.R94C 0.84 unknown(0) TCGA-19-1787-01 11 17436131 17436131 G A ABCC8 Missense_Mutation p.S773L 0.14 deleterious(0.01) possibly_damaging(0.716) TCGA-19-1787-01 11 1774835 1774835 G A CTSD Silent p.S379S 0.72 TCGA-19-1787-01 11 1780753 1780753 G A CTSD Silent p.I115I 0.69 TCGA-19-1787-01 11 18729377 18729377 C T IGSF22 Missense_Mutation p.R1085H 0.88 tolerated(0.82) benign(0) TCGA-19-1787-01 11 22242744 22242745 AG - ANO5 Frame_Shift_Del p.E95Vfs*10 0.59 TCGA-19-1787-01 11 22759302 22759302 G A GAS2 Missense_Mutation p.R154Q 0.71 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 11 34680265 34680265 C T EHF Nonsense_Mutation p.R287* 0.68 TCGA-19-1787-01 11 404670 404670 C T PKP3 3'UTR 0.84 TCGA-19-1787-01 11 43418346 43418346 C T TTC17 Nonsense_Mutation p.R251* 0.74 TCGA-19-1787-01 11 46339016 46339016 C T CREB3L1 Silent p.D412D 0.69 TCGA-19-1787-01 11 46396545 46396545 C T DGKZ Missense_Mutation p.R742W 0.71 deleterious(0) possibly_damaging(0.749) TCGA-19-1787-01 11 46679078 46679078 T A ATG13 Missense_Mutation p.F201I 0.10 tolerated(0.17) probably_damaging(0.942) TCGA-19-1787-01 11 4903473 4903473 C T OR51T1 Missense_Mutation p.S142L 0.70 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 11 59610560 59610560 C T GIF Missense_Mutation p.R104Q 0.71 tolerated(0.56) benign(0.014) TCGA-19-1787-01 11 61026545 61026545 G A VWCE Missense_Mutation p.H824Y 0.78 tolerated_low_confidence(0.1) benign(0.059) TCGA-19-1787-01 11 61571209 61571209 G A FADS1 Missense_Mutation p.R362C 0.71 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 11 6221204 6221205 TG - OR52W1 Frame_Shift_Del p.V252Hfs*78 0.12 TCGA-19-1787-01 11 62284679 62284679 G C AHNAK Missense_Mutation p.S5737C 0.09 benign(0.086) TCGA-19-1787-01 11 64416249 64416249 G A NRXN2 Silent p.A1080A 0.78 TCGA-19-1787-01 11 65350573 65350573 G A EHBP1L1 Silent p.A810A 0.73 TCGA-19-1787-01 11 66062481 66062481 C T TMEM151A Missense_Mutation p.A255V 0.50 tolerated(0.1) probably_damaging(0.997) TCGA-19-1787-01 11 66083224 66083224 C T CD248 Silent p.P425P 0.71 TCGA-19-1787-01 11 66392167 66392167 C T RBM14 Missense_Mutation p.R274C 0.26 deleterious(0.01) probably_damaging(0.948) TCGA-19-1787-01 11 66411527 66411527 C T RBM14-RBM4 Missense_Mutation p.A315V 0.71 tolerated(0.18) unknown(0) TCGA-19-1787-01 11 66625861 66625861 C T LRFN4 Missense_Mutation p.R216C 0.85 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 11 6790172 6790172 G A OR2AG2 Missense_Mutation p.S6F 0.15 tolerated(0.17) benign(0.016) TCGA-19-1787-01 11 68700838 68700838 G A IGHMBP2 Missense_Mutation p.R436Q 0.79 tolerated(0.09) possibly_damaging(0.603) TCGA-19-1787-01 11 71942606 71942606 G A INPPL1 Missense_Mutation p.R521H 0.71 deleterious(0) probably_damaging(0.991) TCGA-19-1787-01 11 73008083 73008083 C T P2RY6 Missense_Mutation p.R174C 0.68 deleterious(0.01) probably_damaging(1) TCGA-19-1787-01 11 828887 828887 G A EFCAB4A Silent p.Q67Q 0.73 TCGA-19-1787-01 11 85396422 85396422 T C CCDC89 Missense_Mutation p.E251G 0.04 deleterious(0.04) benign(0.248) TCGA-19-1787-01 11 87020712 87020712 A T TMEM135 Nonsense_Mutation p.K312* 0.76 TCGA-19-1787-01 11 93466748 93466748 C T KIAA1731 3'Flank 0.78 TCGA-19-1787-01 11 95561132 95561134 TAA - CEP57 In_Frame_Del p.N357del 0.62 TCGA-19-1787-01 11 95712854 95712854 C T MAML2 Missense_Mutation p.R910Q 0.67 unknown(0) TCGA-19-1787-01 11 988608 988608 C T AP2A2 Silent p.C396C 0.72 TCGA-19-1787-01 11 99827719 99827719 G A CNTN5 Silent p.T285T 0.14 TCGA-19-1787-01 12 101880233 101880234 - A SPIC Frame_Shift_Ins p.N146Kfs*50 0.25 TCGA-19-1787-01 12 102040658 102040658 C T MYBPC1 Silent p.F336F 0.53 TCGA-19-1787-01 12 102164906 102164906 C T GNPTAB Silent p.A267A 0.45 TCGA-19-1787-01 12 10225949 10225949 C T CLEC1A Missense_Mutation p.R202H 0.37 tolerated(0.08) possibly_damaging(0.738) TCGA-19-1787-01 12 104336876 104336876 C T HSP90B1 Nonsense_Mutation p.R557* 0.41 TCGA-19-1787-01 12 105538204 105538204 G A KIAA1033 Missense_Mutation p.R717Q 0.45 deleterious(0.01) possibly_damaging(0.699) TCGA-19-1787-01 12 106632782 106632782 G A CKAP4 3'UTR 0.38 TCGA-19-1787-01 12 111345218 111345218 C T CCDC63 Missense_Mutation p.R544C 0.44 deleterious_low_confidence(0.03) possibly_damaging(0.533) TCGA-19-1787-01 12 112143554 112143554 G A ACAD10 Missense_Mutation p.V117M 0.26 tolerated(0.09) possibly_damaging(0.632) TCGA-19-1787-01 12 112191651 112191651 G A ACAD10 Missense_Mutation p.V996M 0.11 tolerated(0.09) probably_damaging(0.987) TCGA-19-1787-01 12 112681564 112681564 G A HECTD4 Missense_Mutation p.R1405C 0.09 probably_damaging(0.989) TCGA-19-1787-01 12 113614724 113614724 C T DDX54 Missense_Mutation p.G225R 0.22 deleterious(0) probably_damaging(1) TCGA-19-1787-01 12 117387452 117387452 G A FBXW8 Silent p.E206E 0.26 TCGA-19-1787-01 12 117685309 117685309 G A NOS1 Silent p.L923L 0.32 TCGA-19-1787-01 12 117962713 117962713 G A KSR2 Silent p.N721N 0.37 TCGA-19-1787-01 12 117962775 117962775 C T KSR2 Missense_Mutation p.E701K 0.51 tolerated(0.05) benign(0.424) TCGA-19-1787-01 12 118599762 118599762 C T TAOK3 Missense_Mutation p.R657Q 0.27 tolerated(1) benign(0) TCGA-19-1787-01 12 119594311 119594311 G A SRRM4 Missense_Mutation p.R515H 0.14 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-19-1787-01 12 119926565 119926565 G A CCDC60 Missense_Mutation p.E151K 0.47 deleterious(0.03) probably_damaging(0.932) TCGA-19-1787-01 12 120582744 120582744 C T GCN1L1 Missense_Mutation p.R1713H 0.28 probably_damaging(0.999) TCGA-19-1787-01 12 121670261 121670261 C T P2RX4 Missense_Mutation p.T326M 0.24 deleterious(0.01) probably_damaging(0.979) TCGA-19-1787-01 12 121712116 121712116 G A CAMKK2 Missense_Mutation p.R72W 0.54 deleterious_low_confidence(0) benign(0.001) TCGA-19-1787-01 12 121855416 121855416 G A RNF34 Missense_Mutation p.R113H 0.10 deleterious(0) probably_damaging(1) TCGA-19-1787-01 12 122199565 122199565 G A TMEM120B Missense_Mutation p.E158K 0.09 tolerated(0.07) benign(0.42) TCGA-19-1787-01 12 122626250 122626250 C T MLXIP Missense_Mutation p.T884M 0.35 deleterious(0) probably_damaging(0.964) TCGA-19-1787-01 12 124268672 124268672 C T DNAH10 Missense_Mutation p.T332M 0.48 benign(0.028) TCGA-19-1787-01 12 124305267 124305267 G A DNAH10 Missense_Mutation p.G1263R 0.34 benign(0.049) TCGA-19-1787-01 12 124330190 124330190 G A DNAH10 Missense_Mutation p.A1684T 0.31 benign(0.07) TCGA-19-1787-01 12 125626670 125626670 C T AACS Silent p.A638A 0.30 TCGA-19-1787-01 12 130184636 130184636 G A TMEM132D Silent p.T229T 0.56 TCGA-19-1787-01 12 130845824 130845824 C T PIWIL1 Nonsense_Mutation p.R589* 0.53 TCGA-19-1787-01 12 130892279 130892279 C T RIMBP2 Missense_Mutation p.D973N 0.48 tolerated(0.11) possibly_damaging(0.643) TCGA-19-1787-01 12 130926975 130926975 C T RIMBP2 Missense_Mutation p.D291N 0.50 deleterious(0.02) possibly_damaging(0.595) TCGA-19-1787-01 12 132466664 132466664 G A EP400 Missense_Mutation p.A524T 0.29 unknown(0) TCGA-19-1787-01 12 132490745 132490745 C T EP400 Silent p.A1008A 0.45 TCGA-19-1787-01 12 133252014 133252014 G A POLE Missense_Mutation p.A399V 0.44 deleterious(0.02) benign(0.276) TCGA-19-1787-01 12 13768594 13768594 T C GRIN2B Missense_Mutation p.K445E 0.44 tolerated(0.42) benign(0.001) TCGA-19-1787-01 12 15800154 15800154 G A EPS8 Missense_Mutation p.A492V 0.37 tolerated(0.11) benign(0.007) TCGA-19-1787-01 12 1749133 1749133 C T WNT5B Silent p.A204A 0.44 TCGA-19-1787-01 12 2997287 2997287 C T RHNO1 Missense_Mutation p.P127S 0.34 tolerated(0.1) benign(0.377) TCGA-19-1787-01 12 30784841 30784841 G A IPO8 Missense_Mutation p.R1002W 0.32 deleterious(0) possibly_damaging(0.656) TCGA-19-1787-01 12 32135889 32135889 G A KIAA1551 Missense_Mutation p.S667N 0.41 tolerated(0.61) benign(0.063) TCGA-19-1787-01 12 330638 330638 G A SLC6A13 Silent p.G530G 0.13 TCGA-19-1787-01 12 3389625 3389625 C T TSPAN9 Silent p.N136N 0.20 TCGA-19-1787-01 12 40697802 40697802 G A LRRK2 Missense_Mutation p.A1215T 0.50 tolerated(0.14) benign(0.002) TCGA-19-1787-01 12 43821125 43821125 C T ADAMTS20 Missense_Mutation p.G1365R 0.40 deleterious(0.01) benign(0.418) TCGA-19-1787-01 12 4554423 4554423 C T FGF6 Missense_Mutation p.R105Q 0.41 tolerated(0.11) benign(0.005) TCGA-19-1787-01 12 48375880 48375880 A G COL2A1 Intron 0.13 TCGA-19-1787-01 12 49226267 49226267 G A DDX23 Silent p.S631S 0.50 TCGA-19-1787-01 12 49231347 49231347 C T DDX23 Missense_Mutation p.R238Q 0.52 tolerated(0.4) benign(0.073) TCGA-19-1787-01 12 50029219 50029221 ATG - PRPF40B In_Frame_Del p.D415del 0.29 TCGA-19-1787-01 12 50475360 50475360 C T ASIC1 Silent p.A551A 0.48 TCGA-19-1787-01 12 52647504 52647504 C T KRT7 3'Flank 0.21 TCGA-19-1787-01 12 52771878 52771878 G A KRT84 Silent p.G581G 0.21 TCGA-19-1787-01 12 53442864 53442867 CCTC - TENC1 5'UTR 0.54 TCGA-19-1787-01 12 53681988 53681988 G A ESPL1 Missense_Mutation p.R1470H 0.39 tolerated(0.13) benign(0.042) TCGA-19-1787-01 12 53685555 53685555 C T ESPL1 Nonsense_Mutation p.R1868* 0.47 TCGA-19-1787-01 12 56119233 56119233 A C CD63 3'Flank 0.26 TCGA-19-1787-01 12 56488220 56488220 G A ERBB3 Missense_Mutation p.R580Q 0.56 tolerated(0.54) benign(0.014) TCGA-19-1787-01 12 56862867 56862867 G A SPRYD4 Missense_Mutation p.A44T 0.34 tolerated(0.24) benign(0.002) TCGA-19-1787-01 12 57619456 57619456 A G NXPH4 Missense_Mutation p.S285G 0.39 tolerated(0.09) probably_damaging(0.992) TCGA-19-1787-01 12 57863392 57863392 G A GLI1 Missense_Mutation p.R496H 0.50 tolerated(0.66) benign(0.012) TCGA-19-1787-01 12 57864385 57864385 G A GLI1 Missense_Mutation p.R621K 0.47 tolerated(0.15) probably_damaging(0.983) TCGA-19-1787-01 12 58021437 58021437 C T B4GALNT1 Missense_Mutation p.G450S 0.50 deleterious(0.02) probably_damaging(0.997) TCGA-19-1787-01 12 66152346 66152346 C T RPSAP52 RNA 0.58 TCGA-19-1787-01 12 66725262 66725262 G A HELB Nonsense_Mutation p.W1000* 0.56 TCGA-19-1787-01 12 6954652 6954652 C T CDCA3 3'Flank 0.57 TCGA-19-1787-01 12 6964599 6964599 C T USP5 Missense_Mutation p.T49M 0.35 deleterious(0) probably_damaging(0.97) TCGA-19-1787-01 12 6970624 6970624 G A USP5 Missense_Mutation p.E506K 0.48 deleterious(0.01) probably_damaging(0.971) TCGA-19-1787-01 12 7473359 7473359 T C ACSM4 Silent p.P320P 0.26 TCGA-19-1787-01 12 77439991 77439991 A G E2F7 Missense_Mutation p.L219P 0.26 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 12 8205482 8205482 G A FOXJ2 3'UTR 0.33 TCGA-19-1787-01 12 8375310 8375310 C T FAM90A1 Missense_Mutation p.R168H 0.47 tolerated(0.29) possibly_damaging(0.559) TCGA-19-1787-01 12 9002824 9002824 C T A2ML1 Missense_Mutation p.R730C 0.09 deleterious(0.01) possibly_damaging(0.725) TCGA-19-1787-01 12 91552240 91552240 G A DCN Missense_Mutation p.A124V 0.43 tolerated(0.09) probably_damaging(0.984) TCGA-19-1787-01 12 96641216 96641216 G A ELK3 Missense_Mutation p.A236T 0.51 tolerated(0.6) benign(0.001) TCGA-19-1787-01 13 111287187 111287187 C T CARKD Intron 0.64 TCGA-19-1787-01 13 114304796 114304796 C T ATP4B Silent p.P213P 0.16 TCGA-19-1787-01 13 19751480 19751480 G A TUBA3C Missense_Mutation p.R215C 0.66 deleterious_low_confidence(0) benign(0.019) TCGA-19-1787-01 13 32810309 32810309 G A FRY Missense_Mutation p.R1937H 0.67 tolerated(0.09) probably_damaging(0.968) TCGA-19-1787-01 13 39435583 39435583 G A FREM2 Missense_Mutation p.R2512H 0.66 deleterious(0.02) probably_damaging(0.997) TCGA-19-1787-01 13 39544347 39544347 C T STOML3 Missense_Mutation p.R164Q 0.75 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 13 48934204 48934205 TA - RB1 Frame_Shift_Del p.V222Pfs*2 0.47 TCGA-19-1787-01 13 50594389 50594389 C T KCNRG Silent p.N206N 0.14 TCGA-19-1787-01 13 53313766 53313766 G - LECT1 Frame_Shift_Del p.P24Rfs*6 0.52 TCGA-19-1787-01 13 76382216 76382216 A T LMO7 Silent p.G366G 0.16 TCGA-19-1787-01 13 77636787 77636787 C T MYCBP2 Missense_Mutation p.V4202I 0.80 probably_damaging(0.923) TCGA-19-1787-01 13 97485387 97485387 A G HS6ST3 Missense_Mutation p.K451E 0.19 tolerated_low_confidence(0.31) benign(0.005) TCGA-19-1787-01 13 99038002 99038002 G A FARP1 Silent p.P231P 0.86 TCGA-19-1787-01 13 99378655 99378655 A T SLC15A1 Missense_Mutation p.F24I 0.67 deleterious(0) probably_damaging(0.947) TCGA-19-1787-01 14 100594927 100594927 C - EVL Frame_Shift_Del p.P189Hfs*41 0.46 TCGA-19-1787-01 14 102695947 102695947 C T MOK Silent p.P343P 0.68 TCGA-19-1787-01 14 105349505 105349505 G A CEP170B Silent p.S237S 0.71 TCGA-19-1787-01 14 105412758 105412758 G A AHNAK2 Silent p.A3010A 0.74 TCGA-19-1787-01 14 106209157 106209157 G A IGHG1 Silent p.N84N 0.68 TCGA-19-1787-01 14 22251690 22251690 G T TRAV7 Missense_Mutation p.D103Y 0.09 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 14 24730984 24730984 C T TGM1 Missense_Mutation p.R142H 0.72 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 14 37149844 37149844 A - SLC25A21 3'UTR 0.45 TCGA-19-1787-01 14 47120981 47120981 G A RPL10L 5'UTR 0.72 TCGA-19-1787-01 14 47121017 47121017 T C RPL10L 5'UTR 0.11 TCGA-19-1787-01 14 51094981 51094984 TGTT - ATL1 Frame_Shift_Del p.F452* 0.75 TCGA-19-1787-01 14 51448554 51448554 C T TRIM9 Missense_Mutation p.R624Q 0.74 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 14 68249872 68249872 T C ZFYVE26 Missense_Mutation p.S1333G 0.65 tolerated(0.34) benign(0.001) TCGA-19-1787-01 14 69520884 69520884 C T DCAF5 Missense_Mutation p.R840H 0.63 tolerated_low_confidence(0.39) benign(0.128) TCGA-19-1787-01 14 70237967 70237967 G A SRSF5 Missense_Mutation p.R203Q 0.78 tolerated(0.08) unknown(0) TCGA-19-1787-01 14 70633479 70633479 C T SLC8A3 Missense_Mutation p.R554Q 0.77 deleterious(0.02) probably_damaging(1) TCGA-19-1787-01 14 73442294 73442294 C T ZFYVE1 Missense_Mutation p.A591T 0.72 deleterious(0) probably_damaging(0.995) TCGA-19-1787-01 14 74203722 74203722 G A ELMSAN1 Silent p.P576P 0.07 TCGA-19-1787-01 14 74206177 74206177 C T ELMSAN1 Missense_Mutation p.V179M 0.09 deleterious_low_confidence(0) benign(0.372) TCGA-19-1787-01 14 77935522 77935522 G A AHSA1 Missense_Mutation p.R316Q 0.74 tolerated(0.07) benign(0.4) TCGA-19-1787-01 14 81964288 81964290 TCT - SEL1L In_Frame_Del p.E358del 0.79 TCGA-19-1787-01 14 90745406 90745406 C T NRDE2 Silent p.K1123K 0.73 TCGA-19-1787-01 14 94052987 94052987 C T UNC79 Missense_Mutation p.P773L 0.70 deleterious(0) probably_damaging(1) TCGA-19-1787-01 14 99641476 99641476 C T BCL11B Missense_Mutation p.R566H 0.73 tolerated(0.67) benign(0.086) TCGA-19-1787-01 15 20644359 20644359 G A HERC2P3 RNA 0.23 TCGA-19-1787-01 15 22864348 22864348 G A TUBGCP5 Missense_Mutation p.R769H 0.68 tolerated(0.52) benign(0.064) TCGA-19-1787-01 15 29397663 29397663 G A APBA2 Missense_Mutation p.E536K 0.69 tolerated(0.07) benign(0.425) TCGA-19-1787-01 15 40327410 40327410 C T EIF2AK4 3'UTR 0.92 TCGA-19-1787-01 15 44036643 44036643 C T PDIA3 5'Flank 0.73 TCGA-19-1787-01 15 59910647 59910647 T C GCNT3 Silent p.C70C 0.71 TCGA-19-1787-01 15 68479993 68479993 G A PIAS1 Silent p.Q592Q 0.73 TCGA-19-1787-01 15 68649516 68649516 C T ITGA11 Missense_Mutation p.R241Q 0.69 deleterious(0.01) probably_damaging(0.991) TCGA-19-1787-01 15 74425158 74425158 G A ISLR2 Silent p.P21P 0.69 TCGA-19-1787-01 15 77907845 77907845 G A LINGO1 Missense_Mutation p.P135L 0.15 deleterious(0.04) possibly_damaging(0.836) TCGA-19-1787-01 15 78921565 78921565 G A CHRNB4 Missense_Mutation p.P361L 0.67 tolerated(0.45) benign(0.002) TCGA-19-1787-01 15 78922193 78922193 C T CHRNB4 Missense_Mutation p.A152T 0.75 deleterious(0.03) possibly_damaging(0.881) TCGA-19-1787-01 15 83687454 83687457 CTTA - BTBD1 Splice_Site p.X430_splice 0.83 TCGA-19-1787-01 15 85345132 85345132 C T ZNF592 Silent p.D1104D 0.62 TCGA-19-1787-01 15 90126084 90126084 G A TICRR Silent p.P274P 0.79 TCGA-19-1787-01 15 90628059 90628059 G A IDH2 Silent p.H420H 0.76 TCGA-19-1787-01 15 99465390 99465390 C T IGF1R Missense_Mutation p.R739W 0.68 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 16 11016097 11016097 C T CIITA Missense_Mutation p.R1075W 0.69 deleterious(0) probably_damaging(0.982) TCGA-19-1787-01 16 1250458 1250458 G A CACNA1H Missense_Mutation p.A336T 0.11 tolerated(1) benign(0.016) TCGA-19-1787-01 16 1270464 1270464 G A CACNA1H Missense_Mutation p.A2178T 0.73 tolerated(0.41) benign(0.011) TCGA-19-1787-01 16 15103572 15103573 AT - PDXDC1 Frame_Shift_Del p.I229Rfs*32 0.25 TCGA-19-1787-01 16 1550586 1550586 G A TELO2 Silent p.A389A 0.64 TCGA-19-1787-01 16 1812883 1812883 C T MAPK8IP3 Missense_Mutation p.R591C 0.11 deleterious(0) probably_damaging(0.943) TCGA-19-1787-01 16 19718294 19718294 C T KNOP1 Missense_Mutation p.A439T 0.69 tolerated(0.42) benign(0.007) TCGA-19-1787-01 16 19745024 19745024 C T IQCK Missense_Mutation p.A84V 0.75 tolerated(0.18) benign(0.018) TCGA-19-1787-01 16 19883640 19883640 G A GPRC5B Silent p.I176I 0.69 TCGA-19-1787-01 16 20807710 20807710 G A ACSM3 Missense_Mutation p.V525I 0.74 tolerated(0.13) benign(0.034) TCGA-19-1787-01 16 2159534 2159534 C T PKD1 Silent p.T1878T 0.73 TCGA-19-1787-01 16 21771804 21771804 G A OTOA Silent p.S1121S 0.49 TCGA-19-1787-01 16 2507018 2507021 GTAA - CCNF Frame_Shift_Del 0.69 TCGA-19-1787-01 16 2580570 2580570 C - CEMP1 Frame_Shift_Del p.E169Kfs*27 0.28 TCGA-19-1787-01 16 27751888 27751890 CTT - KIAA0556 In_Frame_Del p.S758del 0.78 TCGA-19-1787-01 16 2880431 2880431 C T ZG16B Missense_Mutation p.R33W 0.81 deleterious(0.01) possibly_damaging(0.804) TCGA-19-1787-01 16 28998012 28998012 C T LAT Silent p.D161D 0.64 TCGA-19-1787-01 16 29847102 29847102 G A MVP Missense_Mutation p.V219I 0.67 tolerated(0.37) benign(0.195) TCGA-19-1787-01 16 30409757 30409757 G A ZNF48 Missense_Mutation p.A396T 0.74 tolerated(0.57) benign(0.004) TCGA-19-1787-01 16 31094454 31094454 C T ZNF646 3'UTR 0.69 TCGA-19-1787-01 16 31151975 31151975 G A PRSS36 Missense_Mutation p.R669W 0.75 deleterious(0.01) probably_damaging(0.912) TCGA-19-1787-01 16 3781355 3781355 G A CREBBP Silent p.L1670L 0.72 TCGA-19-1787-01 16 4016469 4016469 C T ADCY9 Silent p.A1123A 0.09 TCGA-19-1787-01 16 4242170 4242170 C T SRL Missense_Mutation p.R469H 0.68 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-19-1787-01 16 57394420 57394420 G A CCL22 Missense_Mutation p.V49M 0.76 tolerated(0.26) benign(0.13) TCGA-19-1787-01 16 58031495 58031495 G A ZNF319 Silent p.T225T 0.79 TCGA-19-1787-01 16 67003648 67003648 G A CES3 Missense_Mutation p.V377I 0.76 tolerated(0.4) benign(0.004) TCGA-19-1787-01 16 67168128 67168128 C T C16orf70 Nonsense_Mutation p.R170* 0.78 TCGA-19-1787-01 16 68265931 68265931 G A ESRP2 Missense_Mutation p.S358L 0.76 deleterious(0.05) benign(0.239) TCGA-19-1787-01 16 68373351 68373351 G A PRMT7 Missense_Mutation p.V211I 0.73 tolerated(0.36) benign(0.001) TCGA-19-1787-01 16 70349817 70349817 C T DDX19B Intron 0.85 TCGA-19-1787-01 16 70367562 70367562 C T DDX19B 3'UTR 0.83 TCGA-19-1787-01 16 709013 709013 C T WDR90 Splice_Site p.X1004_splice 0.67 TCGA-19-1787-01 16 70942674 70942674 G A HYDIN Missense_Mutation p.R2699C 0.71 probably_damaging(0.942) TCGA-19-1787-01 16 784383 784383 C T NARFL Intron 0.63 TCGA-19-1787-01 16 87960522 87960522 C T CA5A Missense_Mutation p.V58M 0.68 tolerated(0.05) benign(0.393) TCGA-19-1787-01 16 89763967 89763967 C T SPATA2L Silent p.S350S 0.69 TCGA-19-1787-01 16 89929913 89929913 G A SPIRE2 Silent p.A535A 0.80 TCGA-19-1787-01 16 9943780 9943780 G A GRIN2A Silent p.H387H 0.74 TCGA-19-1787-01 17 10532944 10532944 G A MYH3 Silent p.R1922R 0.73 TCGA-19-1787-01 17 1401344 1401344 G A INPP5K Silent p.P283P 0.74 TCGA-19-1787-01 17 15517182 15517182 C T RP11-385D13.1 Missense_Mutation p.R589H 0.54 deleterious_low_confidence(0.04) probably_damaging(0.991) TCGA-19-1787-01 17 16029446 16029446 T - NCOR1 Frame_Shift_Del p.E529Kfs*26 0.62 TCGA-19-1787-01 17 17754255 17754255 C T TOM1L2 Silent p.A430A 0.78 TCGA-19-1787-01 17 17896208 17896208 C T LRRC48 Missense_Mutation p.R192C 0.10 deleterious(0.02) benign(0.033) TCGA-19-1787-01 17 18653200 18653200 G A FBXW10 Missense_Mutation p.R279H 0.21 deleterious(0.03) benign(0.339) TCGA-19-1787-01 17 19559720 19559720 G A ALDH3A2 Silent p.T171T 0.81 TCGA-19-1787-01 17 25639487 25639487 C T WSB1 3'UTR 0.72 TCGA-19-1787-01 17 2595698 2595698 T C CLUH Missense_Mutation p.S1134G 0.80 deleterious(0.01) benign(0.099) TCGA-19-1787-01 17 25969305 25969305 C T LGALS9 Silent p.R125R 0.61 TCGA-19-1787-01 17 263327 263327 C T C17orf97 Silent p.A231A 0.12 TCGA-19-1787-01 17 27448594 27448594 G A MYO18A Missense_Mutation p.R448C 0.53 tolerated(0.16) possibly_damaging(0.806) TCGA-19-1787-01 17 27903959 27903961 GTA - GIT1 In_Frame_Del p.Y392del 0.79 TCGA-19-1787-01 17 36104668 36104668 C T HNF1B Missense_Mutation p.A70T 0.08 tolerated(0.09) benign(0.002) TCGA-19-1787-01 17 38140598 38140598 C A PSMD3 Missense_Mutation p.P91Q 0.16 deleterious(0) possibly_damaging(0.806) TCGA-19-1787-01 17 39150328 39150328 C T KRTAP3-3 Missense_Mutation p.G8S 0.46 tolerated_low_confidence(0.55) benign(0.004) TCGA-19-1787-01 17 40963577 40963577 C T BECN1 Intron 0.68 TCGA-19-1787-01 17 41362115 41362115 A G NBR1 3'UTR 0.53 TCGA-19-1787-01 17 42284694 42284694 G A UBTF Silent p.D737D 0.72 TCGA-19-1787-01 17 42397473 42397473 G A SLC25A39 Missense_Mutation p.R326W 0.66 deleterious(0.02) probably_damaging(0.995) TCGA-19-1787-01 17 44626852 44626852 C T LRRC37A2 Silent p.N1449N 0.32 TCGA-19-1787-01 17 44846005 44846005 C T WNT3 Missense_Mutation p.R250H 0.77 deleterious(0.03) possibly_damaging(0.903) TCGA-19-1787-01 17 45006917 45006917 C T GOSR2 Missense_Mutation p.R21C 0.76 deleterious(0) benign(0.033) TCGA-19-1787-01 17 47117454 47117454 G A IGF2BP1 Splice_Site p.X273_splice 0.74 TCGA-19-1787-01 17 4797387 4797387 G A MINK1 Missense_Mutation p.R890H 0.32 deleterious(0.01) possibly_damaging(0.813) TCGA-19-1787-01 17 48683352 48683352 C T CACNA1G Missense_Mutation p.R1464W 0.64 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 17 58236770 58236770 C T CA4 Silent p.A308A 0.78 TCGA-19-1787-01 17 6338332 6338332 G A AIPL1 Silent p.S31S 0.65 TCGA-19-1787-01 17 6493878 6493878 C T KIAA0753 Missense_Mutation p.R838H 0.18 tolerated(0.78) benign(0.002) TCGA-19-1787-01 17 65105670 65105670 C T HELZ Missense_Mutation p.A1351T 0.86 tolerated_low_confidence(0.28) benign(0.006) TCGA-19-1787-01 17 71201749 71201749 C T COG1 Missense_Mutation p.R814C 0.05 deleterious(0.01) benign(0.077) TCGA-19-1787-01 17 71281831 71281831 C T CDC42EP4 Missense_Mutation p.G270D 0.65 tolerated(0.38) benign(0.356) TCGA-19-1787-01 17 7129472 7129472 G A DVL2 Silent p.S641S 0.44 TCGA-19-1787-01 17 7154563 7154563 G A CTDNEP1 Missense_Mutation p.A18V 0.08 tolerated_low_confidence(0.2) benign(0.006) TCGA-19-1787-01 17 7155874 7155874 T G ELP5 Missense_Mutation p.L18W 0.71 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 17 7259229 7259229 C - TMEM95 Frame_Shift_Del p.R101Gfs*69 0.46 TCGA-19-1787-01 17 73096796 73096796 C T SLC16A5 Silent p.G346G 0.75 TCGA-19-1787-01 17 74003659 74003659 C T EVPL Missense_Mutation p.R1876H 0.65 deleterious(0) probably_damaging(1) TCGA-19-1787-01 17 74003875 74003875 G A EVPL Missense_Mutation p.P1804L 0.79 tolerated(0.07) possibly_damaging(0.859) TCGA-19-1787-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.76 tolerated(0.11) benign(0.308) TCGA-19-1787-01 17 7605072 7605072 G A WRAP53 Missense_Mutation p.R307Q 0.69 deleterious(0.02) probably_damaging(0.999) TCGA-19-1787-01 17 76557930 76557930 C A DNAH17 Missense_Mutation p.A568S 0.09 benign(0.005) TCGA-19-1787-01 17 77769065 77769065 C T CBX8 Missense_Mutation p.R180Q 0.62 tolerated(0.29) benign(0.238) TCGA-19-1787-01 17 78410007 78410007 G A ENDOV 3'UTR 0.29 TCGA-19-1787-01 17 78445583 78445583 C T NPTX1 Silent p.A342A 0.72 TCGA-19-1787-01 17 78896574 78896574 G A RPTOR Silent p.T857T 0.82 TCGA-19-1787-01 18 14543171 14543171 G A POTEC 5'Flank 0.44 TCGA-19-1787-01 18 18549102 18549102 G C ROCK1 Missense_Mutation p.T963R 0.24 tolerated(0.18) benign(0.063) TCGA-19-1787-01 18 19359641 19359641 C T MIB1 Silent p.G301G 0.09 TCGA-19-1787-01 18 21104437 21104437 G A C18orf8 Missense_Mutation p.A351T 0.39 deleterious(0.01) probably_damaging(0.963) TCGA-19-1787-01 18 23713893 23713893 C T PSMA8 5'UTR 0.51 TCGA-19-1787-01 18 29340253 29340253 C T SLC25A52 Silent p.A134A 0.42 TCGA-19-1787-01 18 3094280 3094280 G A MYOM1 Missense_Mutation p.A1251V 0.37 deleterious(0.01) possibly_damaging(0.686) TCGA-19-1787-01 18 34340718 34340718 G A FHOD3 Missense_Mutation p.V1350I 0.51 tolerated(0.42) benign(0.003) TCGA-19-1787-01 18 43207002 43207002 C T SLC14A2 Silent p.S137S 0.40 TCGA-19-1787-01 18 44555064 44555064 C T TCEB3C Missense_Mutation p.A384T 0.05 tolerated(0.39) possibly_damaging(0.813) TCGA-19-1787-01 18 44555118 44555118 C T TCEB3C Missense_Mutation p.V366I 0.05 tolerated(0.08) benign(0.145) TCGA-19-1787-01 18 44595970 44595970 G A KATNAL2 Missense_Mutation p.R264Q 0.38 deleterious(0) probably_damaging(0.988) TCGA-19-1787-01 18 47809646 47809646 G A CXXC1 Missense_Mutation p.R558W 0.32 deleterious(0) probably_damaging(0.994) TCGA-19-1787-01 18 48575216 48575216 T C SMAD4 Missense_Mutation p.V137A 0.48 tolerated(0.06) benign(0.227) TCGA-19-1787-01 18 51898920 51898920 C T C18orf54 Missense_Mutation p.R310C 0.34 deleterious(0) benign(0.063) TCGA-19-1787-01 18 60645996 60645996 G A PHLPP1 Missense_Mutation p.D1496N 0.38 deleterious(0.01) possibly_damaging(0.906) TCGA-19-1787-01 18 61323094 61323094 C T SERPINB3 Missense_Mutation p.V324M 0.35 tolerated(0.28) benign(0.016) TCGA-19-1787-01 18 7013831 7013831 C T LAMA1 Missense_Mutation p.G1116R 0.51 deleterious(0) probably_damaging(0.99) TCGA-19-1787-01 18 74153907 74153907 C T ZNF516 Silent p.P368P 0.52 TCGA-19-1787-01 18 76752225 76752225 C T SALL3 Silent p.P78P 0.32 TCGA-19-1787-01 18 77227624 77227624 G A NFATC1 Intron 0.38 TCGA-19-1787-01 18 77227663 77227663 G A NFATC1 Intron 0.37 TCGA-19-1787-01 18 77246492 77246492 C T NFATC1 Silent p.G766G 0.44 TCGA-19-1787-01 18 905423 905423 G C ADCYAP1 Silent p.L12L 0.07 TCGA-19-1787-01 19 12825679 12825679 G A TNPO2 Silent p.A282A 0.71 TCGA-19-1787-01 19 14204488 14204488 G A PRKACA Silent p.N294N 0.69 TCGA-19-1787-01 19 14262161 14262161 C T LPHN1 Missense_Mutation p.G1317R 0.86 tolerated(0.18) probably_damaging(0.934) TCGA-19-1787-01 19 1487203 1487203 G A PCSK4 Silent p.D264D 0.79 TCGA-19-1787-01 19 1506625 1506625 C T ADAMTSL5 Missense_Mutation p.A360T 0.47 tolerated(0.16) benign(0.044) TCGA-19-1787-01 19 15536277 15536277 G A WIZ Missense_Mutation p.R462W 0.69 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 19 16301769 16301769 G A FAM32A 3'UTR 0.69 TCGA-19-1787-01 19 17160791 17160791 C T HAUS8 Silent p.S375S 0.70 TCGA-19-1787-01 19 17476458 17476458 G A PLVAP Silent p.C272C 0.71 TCGA-19-1787-01 19 17678226 17678226 G A COLGALT1 Silent p.A167A 0.64 TCGA-19-1787-01 19 17838443 17838443 G A MAP1S Silent p.A750A 0.66 TCGA-19-1787-01 19 17972168 17972168 C T RPL18A Missense_Mutation p.R29C 0.68 deleterious(0.03) benign(0.231) TCGA-19-1787-01 19 18273296 18273296 C T PIK3R2 Silent p.G363G 0.75 TCGA-19-1787-01 19 18649094 18649094 C T FKBP8 Missense_Mutation p.R235Q 0.74 tolerated(0.17) possibly_damaging(0.539) TCGA-19-1787-01 19 19625929 19625929 C T TSSK6 Missense_Mutation p.R103H 0.75 tolerated(0.26) possibly_damaging(0.536) TCGA-19-1787-01 19 19746260 19746260 G A GMIP Silent p.C508C 0.58 TCGA-19-1787-01 19 19749090 19749090 G A GMIP Missense_Mutation p.R223C 0.71 deleterious(0) probably_damaging(1) TCGA-19-1787-01 19 19763485 19763485 G A ATP13A1 Silent p.F715F 0.20 TCGA-19-1787-01 19 2015358 2015358 C T BTBD2 Silent p.V115V 0.67 TCGA-19-1787-01 19 2226351 2226351 C T DOT1L Silent p.P1277P 1.00 TCGA-19-1787-01 19 22846645 22846646 - A ZNF492 Frame_Shift_Ins p.N61Kfs*12 0.53 TCGA-19-1787-01 19 31769976 31769976 G A TSHZ3 Silent p.D241D 0.75 TCGA-19-1787-01 19 3205942 3205942 G A NCLN Missense_Mutation p.R405Q 0.51 tolerated(1) benign(0.002) TCGA-19-1787-01 19 33696341 33696341 C T LRP3 Missense_Mutation p.A222V 0.74 tolerated(0.11) benign(0.038) TCGA-19-1787-01 19 35941111 35941111 C T FFAR2 Silent p.Y165Y 0.68 TCGA-19-1787-01 19 39216436 39216436 C T ACTN4 Missense_Mutation p.R695C 0.74 deleterious(0.01) benign(0.417) TCGA-19-1787-01 19 39876969 39876969 G A PAF1 Missense_Mutation p.R420W 0.78 deleterious(0.01) unknown(0) TCGA-19-1787-01 19 39944022 39944022 G A SUPT5H Silent p.A34A 0.60 TCGA-19-1787-01 19 39944053 39944053 G A SUPT5H Missense_Mutation p.E45K 0.67 tolerated_low_confidence(0.4) benign(0.305) TCGA-19-1787-01 19 41888802 41888802 C T TMEM91 Silent p.I112I 0.69 TCGA-19-1787-01 19 42485917 42485917 C T ATP1A3 Missense_Mutation p.R433H 0.06 deleterious(0.03) probably_damaging(0.997) TCGA-19-1787-01 19 42792098 42792098 C T CIC Missense_Mutation p.S301L 1.00 possibly_damaging(0.464) TCGA-19-1787-01 19 42796588 42796588 G A CIC Missense_Mutation p.G1049S 0.71 probably_damaging(0.987) TCGA-19-1787-01 19 44676262 44676262 G A ZNF226 Missense_Mutation p.V13M 0.62 deleterious(0) probably_damaging(0.995) TCGA-19-1787-01 19 45254510 45254510 C T BCL3 Missense_Mutation p.R95W 0.24 deleterious(0) benign(0.023) TCGA-19-1787-01 19 46825046 46825046 C T HIF3A Silent p.P386P 0.15 TCGA-19-1787-01 19 47761815 47761815 G A CCDC9 Splice_Site p.X2_splice 0.72 TCGA-19-1787-01 19 50463472 50463472 C T SIGLEC11 Missense_Mutation p.D223N 0.51 tolerated(0.51) benign(0.008) TCGA-19-1787-01 19 50978602 50978602 G A FAM71E1 Silent p.N157N 0.82 TCGA-19-1787-01 19 51021571 51021571 C T LRRC4B Missense_Mutation p.G467S 0.17 tolerated_low_confidence(0.37) benign(0.068) TCGA-19-1787-01 19 51466663 51466663 G A KLK6 Missense_Mutation p.R114C 0.68 deleterious(0.02) possibly_damaging(0.758) TCGA-19-1787-01 19 51853640 51853640 G A ETFB Silent p.I218I 0.91 TCGA-19-1787-01 19 5286082 5286082 C T PTPRS Missense_Mutation p.V24I 0.55 tolerated_low_confidence(0.22) benign(0.002) TCGA-19-1787-01 19 53856029 53856029 G A ZNF845 Missense_Mutation p.G701S 0.74 tolerated(1) benign(0.058) TCGA-19-1787-01 19 53995741 53995741 C T ZNF813 3'UTR 0.38 TCGA-19-1787-01 19 54629958 54629958 G A PRPF31 Missense_Mutation p.R304H 0.74 deleterious(0) probably_damaging(1) TCGA-19-1787-01 19 54721267 54721267 G C LILRB3 Missense_Mutation p.S558C 0.06 deleterious(0.01) probably_damaging(0.987) TCGA-19-1787-01 19 54782351 54782351 C T LILRB2 Missense_Mutation p.V341M 0.28 deleterious(0.03) probably_damaging(0.937) TCGA-19-1787-01 19 55713587 55713587 G A PTPRH Silent p.Y330Y 0.64 TCGA-19-1787-01 19 55966627 55966627 C T ISOC2 Missense_Mutation p.S156N 0.60 tolerated(0.1) benign(0.16) TCGA-19-1787-01 19 56160410 56160410 G A CCDC106 5'UTR 0.14 TCGA-19-1787-01 19 57133271 57133271 C T ZNF71 Missense_Mutation p.R206C 0.65 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 19 58199183 58199183 C T ZNF551 Missense_Mutation p.R514C 0.73 tolerated(0.07) possibly_damaging(0.9) TCGA-19-1787-01 19 58596608 58596610 TCC - ZSCAN18 In_Frame_Del p.E383del 0.60 TCGA-19-1787-01 19 59063763 59063763 G A CHMP2A Missense_Mutation p.R71C 0.70 deleterious(0) possibly_damaging(0.892) TCGA-19-1787-01 19 5915268 5915268 G A CAPS Missense_Mutation p.V169M 0.53 deleterious(0) benign(0.383) TCGA-19-1787-01 19 617605 617605 G A POLRMT Silent p.D1182D 0.52 TCGA-19-1787-01 19 6760907 6760907 C T SH2D3A Missense_Mutation p.R54Q 0.76 tolerated(0.24) benign(0.01) TCGA-19-1787-01 19 8326949 8326949 C T CERS4 Missense_Mutation p.R381W 0.68 deleterious(0) probably_damaging(0.983) TCGA-19-1787-01 19 9524083 9524083 C T ZNF266 Silent p.S506S 0.68 TCGA-19-1787-01 1 10336422 10336422 G A KIF1B Silent p.A328A 0.66 TCGA-19-1787-01 1 10421771 10421771 G T KIF1B Missense_Mutation p.A1352S 0.11 deleterious(0.02) probably_damaging(0.987) TCGA-19-1787-01 1 10720396 10720396 G A CASZ1 Missense_Mutation p.R235W 0.75 deleterious_low_confidence(0) probably_damaging(1) TCGA-19-1787-01 1 110233103 110233103 G T GSTM1 Missense_Mutation p.D162Y 0.86 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 1 11094895 11094895 G A MASP2 Silent p.P359P 0.70 TCGA-19-1787-01 1 111437611 111437611 C T CD53 Silent p.T119T 0.82 TCGA-19-1787-01 1 115221114 115221114 T C AMPD1 Missense_Mutation p.N344S 0.09 tolerated(0.06) benign(0.357) TCGA-19-1787-01 1 11595642 11595642 G A PTCHD2 Missense_Mutation p.V1253I 0.78 tolerated(0.09) benign(0.052) TCGA-19-1787-01 1 116247828 116247828 C T CASQ2 Silent p.P308P 0.79 TCGA-19-1787-01 1 120166606 120166606 G A ZNF697 Silent p.D120D 0.87 TCGA-19-1787-01 1 120459167 120459167 G A NOTCH2 Missense_Mutation p.R2060C 0.77 deleterious(0) possibly_damaging(0.824) TCGA-19-1787-01 1 12726619 12726619 G A AADACL4 Missense_Mutation p.R366H 0.82 deleterious(0) possibly_damaging(0.803) TCGA-19-1787-01 1 150938561 150938561 C T CERS2 3'UTR 0.71 TCGA-19-1787-01 1 151379389 151379389 C T POGZ Missense_Mutation p.R848Q 0.68 tolerated(0.25) possibly_damaging(0.884) TCGA-19-1787-01 1 151630870 151630870 C T SNX27 Nonsense_Mutation p.R235* 0.76 TCGA-19-1787-01 1 151774970 151774970 G A LINGO4 Missense_Mutation p.R71C 0.78 deleterious(0) possibly_damaging(0.568) TCGA-19-1787-01 1 152283518 152283518 C T FLG Missense_Mutation p.D1282N 0.70 possibly_damaging(0.555) TCGA-19-1787-01 1 153913523 153913523 C T DENND4B Missense_Mutation p.G395S 0.60 deleterious(0.01) possibly_damaging(0.556) TCGA-19-1787-01 1 155718015 155718015 C T GON4L 3'Flank 0.78 TCGA-19-1787-01 1 156518001 156518001 C T IQGAP3 Missense_Mutation p.R723H 0.73 deleterious(0.02) benign(0.05) TCGA-19-1787-01 1 156812043 156812043 C A INSRR Missense_Mutation p.Q1086H 0.64 deleterious(0.05) benign(0.325) TCGA-19-1787-01 1 158636166 158636166 G A SPTA1 Silent p.A720A 0.65 TCGA-19-1787-01 1 161600164 161600164 G A FCGR3B Missense_Mutation p.R55W 0.35 deleterious(0.01) benign(0.008) TCGA-19-1787-01 1 167095080 167095080 G A DUSP27 Missense_Mutation p.A238T 0.78 deleterious(0) probably_damaging(0.993) TCGA-19-1787-01 1 17296362 17296362 G A CROCC Missense_Mutation p.R1795Q 0.78 benign(0.417) TCGA-19-1787-01 1 174973949 174973949 C T CACYBP Missense_Mutation p.T72M 0.73 deleterious(0.02) probably_damaging(0.95) TCGA-19-1787-01 1 180003192 180003192 G A CEP350 Silent p.T1307T 0.79 TCGA-19-1787-01 1 180165648 180165648 C T QSOX1 Missense_Mutation p.R574W 0.73 deleterious(0.01) possibly_damaging(0.895) TCGA-19-1787-01 1 204228608 204228608 C - PLEKHA6 Frame_Shift_Del p.G262Vfs*54 0.27 TCGA-19-1787-01 1 204587829 204587829 G - LRRN2 Frame_Shift_Del p.P431Qfs*5 0.16 TCGA-19-1787-01 1 205210700 205210700 G A TMCC2 Missense_Mutation p.R92H 0.76 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-19-1787-01 1 205764570 205764570 C T SLC41A1 Missense_Mutation p.R370H 0.78 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 1 206224548 206224548 G A AVPR1B Silent p.V36V 0.77 TCGA-19-1787-01 1 208061091 208061091 C T CD34 Missense_Mutation p.E384K 0.71 deleterious(0) probably_damaging(0.989) TCGA-19-1787-01 1 20971110 20971110 C T PINK1 Missense_Mutation p.R302C 0.78 tolerated(0.08) benign(0.082) TCGA-19-1787-01 1 211276885 211276885 T C KCNH1 Missense_Mutation p.E88G 0.70 deleterious(0.04) possibly_damaging(0.507) TCGA-19-1787-01 1 213341247 213341247 C T RPS6KC1 Silent p.A294A 0.10 TCGA-19-1787-01 1 214170561 214170561 G A PROX1 Missense_Mutation p.R228Q 0.77 tolerated(0.1) probably_damaging(0.98) TCGA-19-1787-01 1 218458707 218458707 A - RRP15 Frame_Shift_Del p.K18Rfs*7 0.60 TCGA-19-1787-01 1 22170691 22170691 C T HSPG2 Missense_Mutation p.A2856T 0.77 possibly_damaging(0.6) TCGA-19-1787-01 1 227169790 227169790 C T ADCK3 Missense_Mutation p.R265C 0.70 deleterious(0.01) benign(0.368) TCGA-19-1787-01 1 228462110 228462110 G A OBSCN Missense_Mutation p.R2258H 0.67 probably_damaging(0.936) TCGA-19-1787-01 1 229685075 229685075 G A ABCB10 Silent p.S208S 0.11 TCGA-19-1787-01 1 2338036 2338036 C T PEX10 Missense_Mutation p.V287I 0.83 tolerated(0.23) benign(0.002) TCGA-19-1787-01 1 23519758 23519758 C T HTR1D Missense_Mutation p.V319M 0.79 deleterious(0) probably_damaging(0.924) TCGA-19-1787-01 1 237167437 237167437 G A MT1HL1 3'UTR 0.78 TCGA-19-1787-01 1 27427089 27427089 G T SLC9A1 Silent p.I719I 0.08 TCGA-19-1787-01 1 27690418 27690418 C T MAP3K6 Missense_Mutation p.R285H 0.76 deleterious(0.01) probably_damaging(0.998) TCGA-19-1787-01 1 28816406 28816406 G T PHACTR4 Intron 0.76 TCGA-19-1787-01 1 29475298 29475303 CTGCGA - SRSF4 In_Frame_Del p.R371_S372del 0.51 TCGA-19-1787-01 1 29618445 29618445 G A PTPRU Missense_Mutation p.A805T 0.87 tolerated(0.2) benign(0.064) TCGA-19-1787-01 1 32137216 32137216 G A COL16A1 Silent p.I1050I 0.90 TCGA-19-1787-01 1 32201251 32201251 C T BAI2 Missense_Mutation p.G1095R 0.67 deleterious(0) probably_damaging(0.996) TCGA-19-1787-01 1 33236482 33236482 C A KIAA1522 Silent p.R568R 0.16 TCGA-19-1787-01 1 33276615 33276615 C T YARS Missense_Mutation p.R34Q 0.48 deleterious(0.02) benign(0.056) TCGA-19-1787-01 1 34258067 34258067 C T CSMD2 Missense_Mutation p.G463S 0.75 deleterious(0.03) probably_damaging(0.999) TCGA-19-1787-01 1 35250841 35250841 C T GJB3 Missense_Mutation p.R160C 0.13 deleterious(0.02) probably_damaging(0.989) TCGA-19-1787-01 1 35452725 35452726 - T ZMYM6 Frame_Shift_Ins p.L1320Ifs*26 0.17 TCGA-19-1787-01 1 36028932 36028932 C T NCDN Silent p.H505H 0.77 TCGA-19-1787-01 1 36557606 36557606 C T ADPRHL2 Silent p.G204G 0.85 TCGA-19-1787-01 1 3670699 3670699 C T CCDC27 Silent p.A112A 0.12 TCGA-19-1787-01 1 3784601 3784601 G A DFFB Missense_Mutation p.R165Q 0.81 deleterious(0.01) possibly_damaging(0.867) TCGA-19-1787-01 1 40131269 40131269 G A NT5C1A Silent p.D119D 0.80 TCGA-19-1787-01 1 40434030 40434030 C T MFSD2A Silent p.D424D 0.73 TCGA-19-1787-01 1 43904435 43904435 G A SZT2 Missense_Mutation p.V2135I 0.10 tolerated(0.91) benign(0.003) TCGA-19-1787-01 1 44085447 44085447 G A PTPRF Missense_Mutation p.E1677K 0.81 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 1 44421995 44421995 C T IPO13 Silent p.Y275Y 0.82 TCGA-19-1787-01 1 44437419 44437419 G A DPH2 Missense_Mutation p.R282H 0.26 tolerated(0.34) benign(0.005) TCGA-19-1787-01 1 45793110 45793110 C T HPDL Missense_Mutation p.A97V 0.11 tolerated(0.27) possibly_damaging(0.566) TCGA-19-1787-01 1 53995531 53995531 G A GLIS1 Missense_Mutation p.P297L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-19-1787-01 1 60325930 60325930 C T HOOK1 Missense_Mutation p.R488C 0.84 deleterious(0) probably_damaging(0.959) TCGA-19-1787-01 1 6535578 6535578 G A PLEKHG5 Missense_Mutation p.R131W 0.04 deleterious(0.04) benign(0.011) TCGA-19-1787-01 1 6681524 6681524 C T PHF13 Missense_Mutation p.R244C 0.85 deleterious(0) probably_damaging(1) TCGA-19-1787-01 1 72058517 72058517 G A NEGR1 Missense_Mutation p.A308V 0.13 deleterious(0.02) possibly_damaging(0.879) TCGA-19-1787-01 1 86965769 86965770 - T CLCA1 3'UTR 0.46 TCGA-19-1787-01 1 880474 880474 G A NOC2L Silent p.D702D 0.75 TCGA-19-1787-01 1 93826156 93826156 C T DR1 Missense_Mutation p.A164V 0.11 tolerated_low_confidence(0.25) unknown(0) TCGA-19-1787-01 1 94343353 94343353 A G DNTTIP2 Silent p.T46T 0.09 TCGA-19-1787-01 1 9796039 9796039 G A CLSTN1 Silent p.S546S 0.78 TCGA-19-1787-01 20 10273820 10273820 C T SNAP25 Missense_Mutation p.R59C 0.74 deleterious(0.02) possibly_damaging(0.8) TCGA-19-1787-01 20 2097458 2097458 G A STK35 Missense_Mutation p.A347T 0.75 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 20 30745741 30745741 G A TM9SF4 Missense_Mutation p.E492K 0.78 tolerated(0.09) possibly_damaging(0.888) TCGA-19-1787-01 20 30803192 30803192 G A POFUT1 Missense_Mutation p.V123M 0.70 deleterious(0.02) possibly_damaging(0.77) TCGA-19-1787-01 20 31035488 31035488 G A C20orf112 Missense_Mutation p.R408W 0.77 deleterious(0.01) probably_damaging(1) TCGA-19-1787-01 20 35444421 35444421 C T SOGA1 Missense_Mutation p.R475Q 0.67 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 20 42679987 42679987 G A TOX2 Silent p.S151S 0.80 TCGA-19-1787-01 20 43726411 43726411 G A KCNS1 Silent p.F334F 0.85 TCGA-19-1787-01 20 45212254 45212256 GAA - SLC13A3 In_Frame_Del p.F392del 0.68 TCGA-19-1787-01 20 48522317 48522317 C T SPATA2 Missense_Mutation p.A468T 0.73 deleterious(0) probably_damaging(0.996) TCGA-19-1787-01 20 6057808 6057808 C T FERMT1 3'UTR 0.16 TCGA-19-1787-01 20 60969285 60969285 C T CABLES2 Silent p.P214P 0.65 TCGA-19-1787-01 20 61576190 61576190 G A GID8 Missense_Mutation p.E205K 0.76 tolerated(0.39) benign(0.272) TCGA-19-1787-01 20 61910287 61910287 G A ARFGAP1 Silent p.T189T 0.75 TCGA-19-1787-01 20 62076611 62076611 C T KCNQ2 Missense_Mutation p.R165Q 0.66 deleterious(0.01) probably_damaging(1) TCGA-19-1787-01 20 62229191 62229191 G A GMEB2 Missense_Mutation p.P127L 0.66 deleterious(0) probably_damaging(1) TCGA-19-1787-01 20 62843476 62843476 G A MYT1 Missense_Mutation p.R501H 0.10 probably_damaging(1) TCGA-19-1787-01 20 9561030 9561030 G A PAK7 Missense_Mutation p.A251V 0.72 tolerated_low_confidence(0.31) benign(0.001) TCGA-19-1787-01 21 18919350 18919350 G A CXADR Missense_Mutation p.A17T 0.33 tolerated(1) benign(0.001) TCGA-19-1787-01 21 27852647 27852647 G A CYYR1 Missense_Mutation p.A93V 0.40 deleterious(0) benign(0.321) TCGA-19-1787-01 21 28302335 28302335 C T ADAMTS5 Missense_Mutation p.V699I 0.40 deleterious(0.02) benign(0.015) TCGA-19-1787-01 21 31768846 31768846 C T KRTAP13-1 Missense_Mutation p.R148C 0.43 tolerated(0.29) benign(0.013) TCGA-19-1787-01 21 34614211 34614212 CT - IFNAR2 5'UTR 0.33 TCGA-19-1787-01 21 37617878 37617878 G T DOPEY2 Missense_Mutation p.L1200F 0.06 tolerated(0.12) benign(0.019) TCGA-19-1787-01 21 37758408 37758408 C T CHAF1B 5'UTR 0.22 TCGA-19-1787-01 21 38792675 38792675 C T DYRK1A 5'UTR 0.27 TCGA-19-1787-01 21 40587167 40587167 T C BRWD1 Missense_Mutation p.I1261V 0.41 deleterious(0.03) possibly_damaging(0.891) TCGA-19-1787-01 21 43412171 43412171 C T ZBTB21 Silent p.A678A 0.42 TCGA-19-1787-01 21 43541201 43541201 C T UMODL1 Silent p.Y1026Y 0.40 TCGA-19-1787-01 21 43792707 43792707 T C TMPRSS3 3'UTR 0.05 TCGA-19-1787-01 21 44492285 44492285 G - CBS Frame_Shift_Del p.Q7Rfs*75 0.11 TCGA-19-1787-01 21 45542193 45542193 G A PWP2 Missense_Mutation p.R591K 0.23 deleterious(0.01) probably_damaging(0.997) TCGA-19-1787-01 21 45670704 45670704 G A DNMT3L Missense_Mutation p.R300C 0.48 deleterious(0) probably_damaging(1) TCGA-19-1787-01 21 45739984 45739984 G A PFKL Nonsense_Mutation p.W382* 0.07 TCGA-19-1787-01 21 46066602 46066602 C T KRTAP10-11 Missense_Mutation p.T76M 0.39 deleterious(0.04) unknown(0) TCGA-19-1787-01 21 47856054 47856054 G A PCNT Missense_Mutation p.V2997M 0.49 benign(0) TCGA-19-1787-01 22 17072055 17072055 G A CCT8L2 Silent p.D462D 0.75 TCGA-19-1787-01 22 19188929 19188929 G A CLTCL1 Missense_Mutation p.R1226C 0.74 tolerated(0.07) benign(0.001) TCGA-19-1787-01 22 19365465 19365465 C T HIRA Missense_Mutation p.A514T 0.75 tolerated(0.68) benign(0) TCGA-19-1787-01 22 22039094 22039094 C T PPIL2 Silent p.A202A 0.70 TCGA-19-1787-01 22 22057711 22057711 G A YPEL1 Missense_Mutation p.A73V 0.77 tolerated(0.14) benign(0.015) TCGA-19-1787-01 22 24179164 24179164 C T DERL3 Intron 0.54 TCGA-19-1787-01 22 29442829 29442829 G A ZNRF3 Silent p.T290T 0.73 TCGA-19-1787-01 22 29445207 29445207 G A ZNRF3 Silent p.A346A 0.68 TCGA-19-1787-01 22 29886678 29886678 G A NEFH Missense_Mutation p.A1017T 0.70 tolerated_low_confidence(1) unknown(0) TCGA-19-1787-01 22 29904440 29904440 G A THOC5 3'UTR 0.62 TCGA-19-1787-01 22 30762071 30762071 G A CCDC157 Missense_Mutation p.V28I 0.75 deleterious(0) benign(0.004) TCGA-19-1787-01 22 31328675 31328675 G A MORC2 Silent p.G806G 0.71 TCGA-19-1787-01 22 31342377 31342377 G A MORC2 Missense_Mutation p.T64I 0.76 deleterious(0) probably_damaging(0.974) TCGA-19-1787-01 22 31345738 31345738 G A MORC2 Missense_Mutation p.S44L 0.38 deleterious(0) probably_damaging(0.916) TCGA-19-1787-01 22 31492874 31492874 G A SMTN Missense_Mutation p.V673I 0.85 tolerated(0.25) benign(0.008) TCGA-19-1787-01 22 31523496 31523496 G A INPP5J Missense_Mutation p.A221T 0.68 tolerated(0.21) probably_damaging(0.992) TCGA-19-1787-01 22 31998716 31998716 C T SFI1 Missense_Mutation p.R584W 0.21 tolerated(0.08) possibly_damaging(0.785) TCGA-19-1787-01 22 35719503 35719503 G A TOM1 Silent p.A127A 0.71 TCGA-19-1787-01 22 35943064 35943064 G A RASD2 Missense_Mutation p.D70N 0.61 deleterious(0.01) probably_damaging(1) TCGA-19-1787-01 22 37875491 37875491 C T MFNG Silent p.A151A 0.78 TCGA-19-1787-01 22 41609919 41609919 C T L3MBTL2 Silent p.I95I 0.72 TCGA-19-1787-01 22 43658754 43658754 G A SCUBE1 Silent p.D194D 0.04 TCGA-19-1787-01 22 43930673 43930673 G A EFCAB6 Silent p.N1376N 0.77 TCGA-19-1787-01 22 47054158 47054158 C T GRAMD4 Missense_Mutation p.R120W 0.84 deleterious(0) probably_damaging(0.967) TCGA-19-1787-01 22 47370253 47370253 C T TBC1D22A Silent p.A361A 0.40 TCGA-19-1787-01 22 50187787 50187787 G A BRD1 Nonsense_Mutation p.R752* 0.66 TCGA-19-1787-01 22 50649075 50649075 C T SELO Silent p.H362H 0.69 TCGA-19-1787-01 2 106498328 106498328 C T NCK2 Silent p.D257D 0.71 TCGA-19-1787-01 2 121736075 121736075 G A GLI2 Silent p.T478T 0.72 TCGA-19-1787-01 2 121989499 121989499 A G TFCP2L1 Missense_Mutation p.I415T 0.70 tolerated(1) benign(0) TCGA-19-1787-01 2 128015217 128015217 C T ERCC3 Silent p.A768A 0.32 TCGA-19-1787-01 2 128610544 128610544 C T POLR2D Missense_Mutation p.R70H 0.75 deleterious(0.05) probably_damaging(0.928) TCGA-19-1787-01 2 131829448 131829448 G A FAM168B Missense_Mutation p.A45V 0.75 tolerated_low_confidence(0.22) benign(0.068) TCGA-19-1787-01 2 133540343 133540343 G A NCKAP5 Silent p.S1347S 0.59 TCGA-19-1787-01 2 141665600 141665600 G A LRP1B Silent p.C1122C 0.05 TCGA-19-1787-01 2 1459946 1459946 C T TPO Silent p.I237I 0.78 TCGA-19-1787-01 2 149216352 149216352 G A MBD5 Missense_Mutation p.G9R 0.66 deleterious(0.05) unknown(0) TCGA-19-1787-01 2 149868126 149868126 C T KIF5C Missense_Mutation p.T937M 0.65 deleterious(0.04) possibly_damaging(0.553) TCGA-19-1787-01 2 158622489 158622489 A G ACVR1 Missense_Mutation p.L337S 0.75 deleterious(0) probably_damaging(1) TCGA-19-1787-01 2 1652818 1652818 C T PXDN Missense_Mutation p.A912T 0.26 deleterious(0) probably_damaging(0.996) TCGA-19-1787-01 2 166897805 166897806 AA - SCN1A Frame_Shift_Del p.F784Hfs*14 0.31 TCGA-19-1787-01 2 169783827 169783827 G A ABCB11 Missense_Mutation p.R1153C 0.79 deleterious(0) probably_damaging(1) TCGA-19-1787-01 2 171678598 171678598 G A GAD1 Silent p.T28T 0.25 TCGA-19-1787-01 2 175337850 175337850 G A GPR155 Nonsense_Mutation p.R235* 0.73 TCGA-19-1787-01 2 175979427 175979427 C A ATF2 Missense_Mutation p.R206M 0.32 deleterious(0) benign(0.201) TCGA-19-1787-01 2 178990730 178990730 G A RBM45 Missense_Mutation p.E418K 0.68 tolerated(0.12) benign(0.059) TCGA-19-1787-01 2 179444904 179444905 AG - TTN Frame_Shift_Del p.S22370Cfs*11 0.46 TCGA-19-1787-01 2 179605835 179605835 G C TTN Missense_Mutation p.A4042G 0.77 TCGA-19-1787-01 2 196602812 196602812 G A DNAH7 Missense_Mutation p.R3970W 0.65 deleterious(0) possibly_damaging(0.832) TCGA-19-1787-01 2 197157375 197157375 C T HECW2 Missense_Mutation p.D972N 0.32 deleterious(0) probably_damaging(0.995) TCGA-19-1787-01 2 197171262 197171263 - G HECW2 Frame_Shift_Ins p.V922Rfs*16 0.47 TCGA-19-1787-01 2 202010155 202010155 C T CFLAR Nonsense_Mutation p.Q221* 0.10 TCGA-19-1787-01 2 21230698 21230698 C A APOB Missense_Mutation p.K3014N 0.08 probably_damaging(0.994) TCGA-19-1787-01 2 217124172 217124172 C T MARCH4 Missense_Mutation p.G366S 0.85 tolerated(1) benign(0) TCGA-19-1787-01 2 220089536 220089536 C T ATG9A Missense_Mutation p.R186Q 0.69 deleterious(0.01) probably_damaging(0.999) TCGA-19-1787-01 2 228881180 228881180 T C SPHKAP Missense_Mutation p.N1464D 0.14 tolerated(0.23) benign(0.011) TCGA-19-1787-01 2 232894776 232894776 G A DIS3L2 Missense_Mutation p.E118K 0.73 tolerated(0.95) benign(0.002) TCGA-19-1787-01 2 233759597 233759597 C T NGEF Silent p.A286A 0.10 TCGA-19-1787-01 2 238494710 238494710 C T RAB17 Missense_Mutation p.V30M 0.71 deleterious(0.02) probably_damaging(1) TCGA-19-1787-01 2 239092348 239092348 C T ILKAP Silent p.T220T 0.32 TCGA-19-1787-01 2 25967316 25967316 C T ASXL2 Silent p.P630P 0.78 TCGA-19-1787-01 2 26684642 26684642 C T OTOF Missense_Mutation p.E1819K 0.71 tolerated(0.44) possibly_damaging(0.886) TCGA-19-1787-01 2 27720123 27720123 G A GCKR Missense_Mutation p.E25K 0.64 deleterious(0.04) probably_damaging(0.999) TCGA-19-1787-01 2 28634934 28634934 G A FOSL2 Silent p.S200S 0.76 TCGA-19-1787-01 2 37293012 37293012 C T HEATR5B Missense_Mutation p.A407T 0.65 tolerated(0.66) benign(0.001) TCGA-19-1787-01 2 38908538 38908538 C T GALM Silent p.G154G 0.73 TCGA-19-1787-01 2 43019716 43019716 C T HAAO 5'UTR 0.62 TCGA-19-1787-01 2 43956810 43956810 G T PLEKHH2 Missense_Mutation p.G919V 0.88 deleterious(0) probably_damaging(0.947) TCGA-19-1787-01 2 44051065 44051065 G A ABCG5 Silent p.N437N 0.69 TCGA-19-1787-01 2 44459528 44459528 G A PPM1B 3'Flank 0.77 TCGA-19-1787-01 2 71192294 71192294 C A ATP6V1B1 3'UTR 0.77 TCGA-19-1787-01 2 73188308 73188308 G A SFXN5 Silent p.F299F 0.69 TCGA-19-1787-01 2 73520430 73520430 C T EGR4 Missense_Mutation p.E109K 0.25 deleterious_low_confidence(0) possibly_damaging(0.646) TCGA-19-1787-01 2 86998732 86998732 C A RMND5A Missense_Mutation p.P337T 0.64 deleterious(0) probably_damaging(1) TCGA-19-1787-01 2 90044265 90044265 G A IGKV2D-24 Silent p.Q62Q 0.09 TCGA-19-1787-01 2 9541471 9541473 CTT - ASAP2 In_Frame_Del p.F965del 0.69 TCGA-19-1787-01 2 99438758 99438758 C T KIAA1211L Missense_Mutation p.A660T 0.86 tolerated(0.56) benign(0) TCGA-19-1787-01 3 10219680 10219680 C T IRAK2 Missense_Mutation p.R85W 0.68 deleterious(0) probably_damaging(1) TCGA-19-1787-01 3 11300708 11300708 G A HRH1 5'UTR 0.73 TCGA-19-1787-01 3 118917938 118917938 G A UPK1B Missense_Mutation p.R228Q 0.66 tolerated(0.14) possibly_damaging(0.871) TCGA-19-1787-01 3 123471381 123471381 C T MYLK Missense_Mutation p.R57Q 0.81 deleterious(0.04) benign(0.301) TCGA-19-1787-01 3 124160808 124160808 G A KALRN Missense_Mutation p.R1070Q 0.14 deleterious(0) probably_damaging(0.959) TCGA-19-1787-01 3 125216766 125216766 C T SNX4 Missense_Mutation p.R154Q 0.71 deleterious(0) probably_damaging(1) TCGA-19-1787-01 3 125734346 125734346 C T SLC41A3 Missense_Mutation p.V321I 0.76 tolerated(0.27) benign(0.113) TCGA-19-1787-01 3 127440000 127440000 C T MGLL Missense_Mutation p.A136T 0.72 tolerated(0.13) benign(0.19) TCGA-19-1787-01 3 134960031 134960031 C T EPHB1 Silent p.I796I 0.79 TCGA-19-1787-01 3 13670666 13670666 G A FBLN2 Missense_Mutation p.V906M 0.75 deleterious(0) probably_damaging(0.996) TCGA-19-1787-01 3 138665363 138665363 G A FOXL2 Missense_Mutation p.R68C 0.17 deleterious(0) benign(0.419) TCGA-19-1787-01 3 142840116 142840116 G A CHST2 Missense_Mutation p.G153D 0.72 tolerated_low_confidence(0.57) unknown(0) TCGA-19-1787-01 3 15070173 15070173 C T NR2C2 Silent p.N312N 0.72 TCGA-19-1787-01 3 15300443 15300443 G A SH3BP5 Missense_Mutation p.R262C 0.68 deleterious(0.02) probably_damaging(0.932) TCGA-19-1787-01 3 171969154 171969154 C T FNDC3B Missense_Mutation p.R205C 0.76 deleterious(0) benign(0.031) TCGA-19-1787-01 3 183209684 183209685 - G KLHL6 3'UTR 0.20 TCGA-19-1787-01 3 184049374 184049374 C T EIF4G1 Missense_Mutation p.R1466W 0.64 deleterious(0) benign(0.356) TCGA-19-1787-01 3 195022810 195022810 G A ACAP2 Missense_Mutation p.R404W 0.75 deleterious(0) possibly_damaging(0.846) TCGA-19-1787-01 3 27759146 27759146 G A EOMES Silent p.G492G 0.78 TCGA-19-1787-01 3 3139615 3139615 G A IL5RA Silent p.N216N 0.79 TCGA-19-1787-01 3 37284968 37284968 C A GOLGA4 5'UTR 0.25 TCGA-19-1787-01 3 38645391 38645391 G A SCN5A Missense_Mutation p.R568C 0.73 deleterious(0.02) possibly_damaging(0.748) TCGA-19-1787-01 3 41957535 41957535 C T ULK4 Missense_Mutation p.R246H 0.66 tolerated(0.54) possibly_damaging(0.627) TCGA-19-1787-01 3 47284564 47284564 C T KIF9 Silent p.P562P 0.31 TCGA-19-1787-01 3 48461482 48461482 G A PLXNB1 Missense_Mutation p.P738L 0.70 tolerated(0.06) benign(0.424) TCGA-19-1787-01 3 48670995 48670995 G A SLC26A6 Missense_Mutation p.R33W 0.73 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 3 48717067 48717067 G A NCKIPSD Missense_Mutation p.T477M 0.67 deleterious(0.02) benign(0.047) TCGA-19-1787-01 3 49038879 49038879 G A P4HTM Missense_Mutation p.G149S 0.66 tolerated(0.11) probably_damaging(0.911) TCGA-19-1787-01 3 49698770 49698770 C T BSN Silent p.I3164I 0.72 TCGA-19-1787-01 3 50405102 50405102 G A CACNA2D2 Silent p.D763D 0.18 TCGA-19-1787-01 3 52400874 52400874 C T DNAH1 Silent p.Y1912Y 0.67 TCGA-19-1787-01 3 52553536 52553536 G A STAB1 Missense_Mutation p.A1731T 0.75 tolerated(0.08) benign(0.165) TCGA-19-1787-01 3 52853420 52853420 C T ITIH4 Missense_Mutation p.R689H 0.79 tolerated(0.16) benign(0.002) TCGA-19-1787-01 3 53851790 53851790 C T CHDH 3'UTR 0.89 TCGA-19-1787-01 3 71247403 71247403 C T FOXP1 Missense_Mutation p.V44M 0.77 deleterious_low_confidence(0.03) probably_damaging(0.966) TCGA-19-1787-01 3 74418355 74418355 G A CNTN3 Missense_Mutation p.R311C 0.32 deleterious(0) probably_damaging(0.982) TCGA-19-1787-01 3 8607236 8607236 C T LMCD1 Missense_Mutation p.P281L 0.73 tolerated(0.87) benign(0.204) TCGA-19-1787-01 3 9798261 9798261 C T OGG1 Missense_Mutation p.T285M 0.67 tolerated(0.13) benign(0.001) TCGA-19-1787-01 4 106604215 106604215 G A INTS12 Missense_Mutation p.T355M 0.71 deleterious_low_confidence(0.01) benign(0.333) TCGA-19-1787-01 4 111397917 111397917 C T ENPEP Missense_Mutation p.T116M 0.71 deleterious(0.02) probably_damaging(0.951) TCGA-19-1787-01 4 122731134 122731134 G A EXOSC9 Silent p.L206L 0.12 TCGA-19-1787-01 4 1231903 1231903 G A CTBP1 Intron 0.77 TCGA-19-1787-01 4 146436051 146436051 G A SMAD1 Missense_Mutation p.D96N 0.73 deleterious(0.02) probably_damaging(0.991) TCGA-19-1787-01 4 146560555 146560555 A G MMAA Silent p.K88K 0.07 TCGA-19-1787-01 4 154517415 154517415 G A KIAA0922 Silent p.T667T 0.73 TCGA-19-1787-01 4 156784765 156784765 C T ASIC5 Missense_Mutation p.R61H 0.74 tolerated(0.16) benign(0.219) TCGA-19-1787-01 4 177190179 177190183 AAAAC - ASB5 Frame_Shift_Del p.C26* 0.66 TCGA-19-1787-01 4 184931276 184931276 G A STOX2 Missense_Mutation p.V429M 0.67 tolerated(0.32) benign(0.003) TCGA-19-1787-01 4 186241918 186241918 C T SNX25 Missense_Mutation p.T295M 0.34 tolerated(0.09) benign(0.013) TCGA-19-1787-01 4 187521114 187521114 G A FAT1 Missense_Mutation p.T4014M 0.64 benign(0.232) TCGA-19-1787-01 4 187627817 187627817 C T FAT1 Silent p.T1055T 0.73 TCGA-19-1787-01 4 2307256 2307256 G A ZFYVE28 Silent p.L271L 0.09 TCGA-19-1787-01 4 3768706 3768706 G A ADRA2C Missense_Mutation p.G125S 0.70 deleterious(0.05) benign(0.051) TCGA-19-1787-01 4 40245505 40245505 G A RHOH Missense_Mutation p.V167I 0.67 tolerated(1) probably_damaging(0.989) TCGA-19-1787-01 4 48523075 48523075 C T FRYL Missense_Mutation p.R2560Q 0.22 tolerated_low_confidence(1) benign(0) TCGA-19-1787-01 4 48559588 48559593 TCATCT - FRYL In_Frame_Del p.E1334_D1335del 0.51 TCGA-19-1787-01 4 56734641 56734641 G A EXOC1 Silent p.A185A 0.70 TCGA-19-1787-01 4 69512983 69512983 G A UGT2B15 Nonsense_Mutation p.R478* 0.69 TCGA-19-1787-01 4 76787439 76787439 C T PPEF2 Missense_Mutation p.R608Q 0.76 deleterious(0) possibly_damaging(0.883) TCGA-19-1787-01 4 7728538 7728538 C T SORCS2 Missense_Mutation p.T926M 0.66 tolerated(0.22) benign(0.221) TCGA-19-1787-01 4 8588809 8588809 G A GPR78 Missense_Mutation p.V271M 0.68 deleterious(0) probably_damaging(0.922) TCGA-19-1787-01 4 952132 952132 G A TMEM175 Missense_Mutation p.V455M 0.71 deleterious(0.02) benign(0.298) TCGA-19-1787-01 5 108523288 108523288 C T FER 3'UTR 0.19 TCGA-19-1787-01 5 110439612 110439612 G A WDR36 Missense_Mutation p.R298H 0.59 deleterious(0) probably_damaging(0.991) TCGA-19-1787-01 5 115782450 115782450 C T SEMA6A Silent p.S984S 0.39 TCGA-19-1787-01 5 129037279 129037279 G A ADAMTS19 Nonsense_Mutation p.W1045* 0.21 TCGA-19-1787-01 5 135692820 135692820 C T TRPC7 Missense_Mutation p.V86M 0.13 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 5 136974713 136974713 C T KLHL3 Missense_Mutation p.R383H 0.12 deleterious(0) probably_damaging(0.991) TCGA-19-1787-01 5 137518142 137518142 C T KIF20A Missense_Mutation p.T169M 0.64 deleterious(0) probably_damaging(1) TCGA-19-1787-01 5 137520235 137520235 C T KIF20A Missense_Mutation p.P518L 0.12 tolerated(0.07) benign(0.017) TCGA-19-1787-01 5 139917123 139917123 G A ANKHD1 Missense_Mutation p.A2393T 0.57 possibly_damaging(0.906) TCGA-19-1787-01 5 140176048 140176048 G T PCDHA2 Missense_Mutation p.G500V 0.15 deleterious_low_confidence(0) possibly_damaging(0.846) TCGA-19-1787-01 5 140188443 140188443 C T PCDHA4 Silent p.D557D 0.62 TCGA-19-1787-01 5 140215343 140215343 G A PCDHA7 Missense_Mutation p.E459K 0.66 tolerated_low_confidence(0.05) benign(0.176) TCGA-19-1787-01 5 140215860 140215860 T G PCDHA7 Missense_Mutation p.I631S 0.11 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-19-1787-01 5 140221045 140221045 C T PCDHA8 Missense_Mutation p.R47W 0.17 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-19-1787-01 5 140228219 140228219 C T PCDHA9 Missense_Mutation p.R47C 0.11 deleterious_low_confidence(0.01) probably_damaging(0.989) TCGA-19-1787-01 5 140263476 140263476 C T PCDHA13 Silent p.G541G 0.07 TCGA-19-1787-01 5 140626460 140626460 C T PCDHB15 Silent p.T438T 0.16 TCGA-19-1787-01 5 140626735 140626735 G A PCDHB15 Missense_Mutation p.R530H 0.29 tolerated_low_confidence(0.25) benign(0.028) TCGA-19-1787-01 5 140720545 140720545 C T PCDHGA2 Silent p.P669P 0.10 TCGA-19-1787-01 5 140731948 140731948 C T PCDHGB1 Silent p.I707I 0.17 TCGA-19-1787-01 5 140741672 140741672 C T PCDHGB2 Missense_Mutation p.T657M 0.15 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 5 140755597 140755597 C T PCDHGA6 Silent p.H649H 0.11 TCGA-19-1787-01 5 140774669 140774669 G A PCDHGA8 Silent p.S763S 0.17 TCGA-19-1787-01 5 140789685 140789685 G A PCDHGB6 Missense_Mutation p.R639H 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-19-1787-01 5 141059903 141059903 C T ARAP3 Missense_Mutation p.A51T 0.63 deleterious(0.01) probably_damaging(1) TCGA-19-1787-01 5 141243551 141243551 C T PCDH1 Missense_Mutation p.R782Q 0.11 tolerated(0.69) possibly_damaging(0.806) TCGA-19-1787-01 5 141336495 141336495 G A PCDH12 Nonsense_Mutation p.R308* 0.12 TCGA-19-1787-01 5 14358419 14358419 G A TRIO Missense_Mutation p.V727M 0.26 benign(0.003) TCGA-19-1787-01 5 14406712 14406712 C T TRIO Silent p.D1630D 0.32 TCGA-19-1787-01 5 145552272 145552272 G A LARS Missense_Mutation p.T64M 0.73 deleterious(0) benign(0.151) TCGA-19-1787-01 5 149227008 149227008 C - PPARGC1B Intron 0.12 TCGA-19-1787-01 5 149375964 149375964 G A TIGD6 5'UTR 0.57 TCGA-19-1787-01 5 149562372 149562372 G A CDX1 Missense_Mutation p.D163N 0.14 deleterious(0) probably_damaging(0.957) TCGA-19-1787-01 5 156378638 156378638 A G TIMD4 Silent p.I188I 0.10 TCGA-19-1787-01 5 157178520 157178520 G A LSM11 Missense_Mutation p.D191N 0.15 deleterious(0) probably_damaging(0.994) TCGA-19-1787-01 5 15928373 15928373 C T FBXL7 Missense_Mutation p.R168C 0.35 deleterious(0.01) probably_damaging(0.985) TCGA-19-1787-01 5 159996654 159996654 G C ATP10B Missense_Mutation p.L1263V 0.45 tolerated(0.16) benign(0.034) TCGA-19-1787-01 5 161300264 161300264 A G GABRA1 Missense_Mutation p.K133E 0.52 deleterious(0) benign(0.297) TCGA-19-1787-01 5 168180981 168180981 G A SLIT3 Nonsense_Mutation p.R573* 0.24 TCGA-19-1787-01 5 176314613 176314613 C T HK3 Missense_Mutation p.R480Q 0.10 tolerated(0.08) benign(0.273) TCGA-19-1787-01 5 39202475 39202475 G A FYB Silent p.P206P 0.52 TCGA-19-1787-01 5 40945396 40945396 C T C7 Missense_Mutation p.R222C 0.28 deleterious(0) possibly_damaging(0.634) TCGA-19-1787-01 5 41149449 41149449 G A C6 Silent p.D839D 0.04 TCGA-19-1787-01 5 41159289 41159289 G A C6 Missense_Mutation p.S584L 0.29 tolerated(0.22) benign(0.36) TCGA-19-1787-01 5 50090852 50090852 C T PARP8 Silent p.S343S 0.51 TCGA-19-1787-01 5 52360826 52360826 G A ITGA2 Missense_Mutation p.D563N 0.57 deleterious(0) probably_damaging(0.993) TCGA-19-1787-01 5 52779512 52779512 G A FST Silent p.E152E 0.09 TCGA-19-1787-01 5 5463363 5463363 C T KIAA0947 Missense_Mutation p.R1306W 0.74 deleterious(0.04) possibly_damaging(0.784) TCGA-19-1787-01 5 58272189 58272189 G A PDE4D Silent p.S606S 0.21 TCGA-19-1787-01 5 58334685 58334685 C A PDE4D Splice_Site p.X307_splice 0.25 TCGA-19-1787-01 5 72469592 72469592 C T TMEM174 Silent p.A174A 0.10 TCGA-19-1787-01 5 74064783 74064783 C T NSA2 Missense_Mutation p.R11C 0.26 tolerated(0.11) benign(0.003) TCGA-19-1787-01 5 74882879 74882880 GA - POLK Frame_Shift_Del p.R420Dfs*4 0.19 TCGA-19-1787-01 5 75960920 75960920 G A IQGAP2 Missense_Mutation p.D867N 0.55 deleterious(0.04) possibly_damaging(0.703) TCGA-19-1787-01 5 76749728 76749728 T A WDR41 Missense_Mutation p.D146V 0.22 deleterious(0.01) possibly_damaging(0.531) TCGA-19-1787-01 5 82837098 82837100 CTT - VCAN In_Frame_Del p.S2760del 0.64 TCGA-19-1787-01 5 90261296 90261296 C T GPR98 Missense_Mutation p.A5974V 0.09 probably_damaging(0.918) TCGA-19-1787-01 5 9224814 9224814 C T SEMA5A Silent p.T206T 0.71 TCGA-19-1787-01 5 94918635 94918635 G A ARSK Silent p.A144A 0.30 TCGA-19-1787-01 6 112441658 112441658 C T LAMA4 Missense_Mutation p.R1498H 0.69 tolerated(0.06) possibly_damaging(0.677) TCGA-19-1787-01 6 114378576 114378576 G A HS3ST5 Missense_Mutation p.R296W 0.74 deleterious(0) probably_damaging(0.996) TCGA-19-1787-01 6 117730774 117730774 G A ROS1 Missense_Mutation p.A87V 0.68 deleterious(0.02) benign(0.027) TCGA-19-1787-01 6 138413248 138413248 G T PERP Nonsense_Mutation p.C171* 0.69 TCGA-19-1787-01 6 146264731 146264731 C T SHPRH Missense_Mutation p.D596N 0.73 tolerated_low_confidence(0.26) benign(0.012) TCGA-19-1787-01 6 152527344 152527344 G A SYNE1 Missense_Mutation p.R7660W 0.22 benign(0.339) TCGA-19-1787-01 6 158834165 158834165 C T TULP4 Silent p.F107F 0.11 TCGA-19-1787-01 6 158923657 158923657 C T TULP4 Missense_Mutation p.R988W 0.67 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-19-1787-01 6 159457884 159457884 G A TAGAP Missense_Mutation p.R391W 0.69 tolerated(0.17) benign(0.002) TCGA-19-1787-01 6 159636009 159636009 C T FNDC1 Missense_Mutation p.R165C 0.72 deleterious(0) unknown(0) TCGA-19-1787-01 6 166571880 166571880 C T T Missense_Mutation p.V411M 0.79 tolerated(0.1) benign(0.146) TCGA-19-1787-01 6 17608573 17608573 C - FAM8A1 3'UTR 0.45 TCGA-19-1787-01 6 17669701 17669701 C T NUP153 Missense_Mutation p.R310Q 0.73 deleterious(0) probably_damaging(0.975) TCGA-19-1787-01 6 18197423 18197423 G A KDM1B Missense_Mutation p.V237M 0.72 deleterious_low_confidence(0.01) unknown(0) TCGA-19-1787-01 6 30653431 30653431 C T PPP1R18 Missense_Mutation p.R122Q 0.67 tolerated_low_confidence(0.39) benign(0.003) TCGA-19-1787-01 6 31112951 31112951 C T CCHCR1 Missense_Mutation p.R623Q 0.20 tolerated(0.06) probably_damaging(0.973) TCGA-19-1787-01 6 32017817 32017817 C T TNXB 5'Flank 0.07 TCGA-19-1787-01 6 32150368 32150369 GA - AGER Frame_Shift_Del p.P267Sfs*23 0.50 TCGA-19-1787-01 6 32975337 32975337 G A HLA-DOA Missense_Mutation p.R122W 0.77 deleterious(0) probably_damaging(0.912) TCGA-19-1787-01 6 33171648 33171648 C T SLC39A7 3'UTR 0.68 TCGA-19-1787-01 6 33405993 33405993 C T SYNGAP1 Silent p.P437P 0.70 TCGA-19-1787-01 6 34507031 34507033 CTC - SPDEF In_Frame_Del p.E275del 0.79 TCGA-19-1787-01 6 36867370 36867371 - C C6orf89 Frame_Shift_Ins p.Q61Afs*10 0.44 TCGA-19-1787-01 6 36995261 36995261 C T FGD2 Silent p.I554I 0.79 TCGA-19-1787-01 6 39304168 39304168 C T KIF6 3'UTR 0.70 TCGA-19-1787-01 6 4031881 4031881 A - PRPF4B Frame_Shift_Del p.K46Rfs*58 0.31 TCGA-19-1787-01 6 42025279 42025279 G A TAF8 Intron 0.71 TCGA-19-1787-01 6 42974763 42974763 G A PPP2R5D Missense_Mutation p.R146Q 0.79 deleterious(0) possibly_damaging(0.822) TCGA-19-1787-01 6 46847707 46847707 T C GPR116 Missense_Mutation p.K295R 0.13 tolerated(0.3) benign(0.063) TCGA-19-1787-01 6 49425612 49425613 - T MUT Frame_Shift_Ins p.M182Nfs*29 0.43 TCGA-19-1787-01 6 6174939 6174939 G A F13A1 Missense_Mutation p.R541W 0.74 deleterious(0.02) benign(0.005) TCGA-19-1787-01 6 7571754 7571754 G A DSP Missense_Mutation p.D614N 0.68 possibly_damaging(0.902) TCGA-19-1787-01 6 83880077 83880077 G A PGM3 Missense_Mutation p.R524W 0.33 deleterious(0) probably_damaging(1) TCGA-19-1787-01 6 87970632 87970632 C T ZNF292 Missense_Mutation p.R2429W 0.71 deleterious(0) possibly_damaging(0.556) TCGA-19-1787-01 6 89890146 89890146 G A GABRR1 Silent p.R337R 0.69 TCGA-19-1787-01 7 100364773 100364773 G A ZAN Missense_Mutation p.A1585T 0.49 unknown(0) TCGA-19-1787-01 7 100373318 100373318 G A ZAN Missense_Mutation p.A2018T 0.47 unknown(0) TCGA-19-1787-01 7 101960949 101960949 G A SH2B2 Missense_Mutation p.R555Q 0.35 tolerated(0.44) probably_damaging(0.91) TCGA-19-1787-01 7 102109379 102109379 G A LRWD1 Silent p.A366A 0.39 TCGA-19-1787-01 7 103175830 103175830 G A RELN Missense_Mutation p.R2428W 0.50 deleterious(0.01) possibly_damaging(0.801) TCGA-19-1787-01 7 107669601 107669601 C T LAMB4 Missense_Mutation p.R1678H 0.50 tolerated(0.73) benign(0) TCGA-19-1787-01 7 111418382 111418382 C T DOCK4 Missense_Mutation p.R1201H 0.35 deleterious(0) probably_damaging(0.985) TCGA-19-1787-01 7 112462276 112462278 AAG - C7orf60 In_Frame_Del p.L247del 0.49 TCGA-19-1787-01 7 11676129 11676129 C T THSD7A Missense_Mutation p.R217Q 0.16 deleterious(0) probably_damaging(1) TCGA-19-1787-01 7 124469333 124469333 C T POT1 Silent p.S523S 0.38 TCGA-19-1787-01 7 127484470 127484470 G A SND1 Missense_Mutation p.G446R 0.29 deleterious(0) probably_damaging(0.952) TCGA-19-1787-01 7 128033079 128033079 G A IMPDH1 Silent p.Y594Y 0.52 TCGA-19-1787-01 7 128492763 128492763 C T FLNC Silent p.N1987N 0.43 TCGA-19-1787-01 7 133979514 133979514 C T SLC35B4 3'UTR 0.45 TCGA-19-1787-01 7 134346724 134346724 G A BPGM Silent p.S155S 0.33 TCGA-19-1787-01 7 134871854 134871854 G A WDR91 Missense_Mutation p.T650M 0.35 deleterious(0.02) probably_damaging(0.98) TCGA-19-1787-01 7 138774379 138774379 A - ZC3HAV1 Frame_Shift_Del p.F145Lfs*49 0.29 TCGA-19-1787-01 7 144069839 144069839 G A ARHGEF5 Missense_Mutation p.A1347T 0.14 deleterious(0.01) possibly_damaging(0.845) TCGA-19-1787-01 7 146825877 146825877 C T CNTNAP2 Silent p.G344G 0.46 TCGA-19-1787-01 7 147844695 147844695 G A CNTNAP2 Silent p.R889R 0.20 TCGA-19-1787-01 7 148716184 148716184 C T PDIA4 Silent p.A125A 0.40 TCGA-19-1787-01 7 148921697 148921697 C T ZNF282 Silent p.P658P 0.44 TCGA-19-1787-01 7 149498906 149498906 C T SSPO RNA 0.43 TCGA-19-1787-01 7 150069195 150069195 G A REPIN1 Missense_Mutation p.E346K 0.43 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 7 150174927 150174927 C T GIMAP8 3'UTR 0.27 TCGA-19-1787-01 7 150732813 150732813 G A ABCB8 Missense_Mutation p.R304H 0.38 tolerated(0.06) probably_damaging(0.963) TCGA-19-1787-01 7 154875968 154875968 G A HTR5A Missense_Mutation p.R282Q 0.33 deleterious(0.05) benign(0.18) TCGA-19-1787-01 7 156450919 156450919 G A RNF32 Missense_Mutation p.R183H 0.48 tolerated(0.05) possibly_damaging(0.891) TCGA-19-1787-01 7 157874020 157874020 C T PTPRN2 Missense_Mutation p.V565M 0.34 tolerated(0.21) benign(0.218) TCGA-19-1787-01 7 158828692 158828692 C T VIPR2 Missense_Mutation p.V254I 0.34 tolerated(0.64) benign(0.016) TCGA-19-1787-01 7 17890504 17890504 T G SNX13 Missense_Mutation p.R307S 0.29 tolerated(0.07) benign(0.038) TCGA-19-1787-01 7 19184886 19184886 C T FERD3L Missense_Mutation p.A34T 0.57 tolerated(0.67) benign(0.002) TCGA-19-1787-01 7 21775289 21775289 G A DNAH11 Missense_Mutation p.R2498H 0.43 probably_damaging(0.95) TCGA-19-1787-01 7 42005329 42005329 G A GLI3 Silent p.S1114S 0.44 TCGA-19-1787-01 7 4308342 4308342 C T SDK1 3'UTR 0.71 TCGA-19-1787-01 7 44116186 44116186 G A POLM Missense_Mutation p.R253W 0.10 deleterious(0) benign(0.094) TCGA-19-1787-01 7 44153269 44153269 G A AEBP1 Silent p.P962P 0.50 TCGA-19-1787-01 7 44802904 44802904 C T ZMIZ2 Silent p.N584N 0.43 TCGA-19-1787-01 7 44869715 44869715 G A H2AFV 3'Flank 0.06 TCGA-19-1787-01 7 45753517 45753517 G A ADCY1 Missense_Mutation p.V1095I 0.47 tolerated_low_confidence(0.24) benign(0.008) TCGA-19-1787-01 7 47343076 47343076 C T TNS3 Missense_Mutation p.G977S 0.32 tolerated(0.57) benign(0.006) TCGA-19-1787-01 7 50513077 50513077 G A FIGNL1 Nonsense_Mutation p.R637* 0.51 TCGA-19-1787-01 7 5256735 5256738 TCAA - WIPI2 Frame_Shift_Del p.I166Tfs*26 0.67 TCGA-19-1787-01 7 66297994 66297994 G A GTF2IRD1P1 RNA 0.47 TCGA-19-1787-01 7 72419543 72419543 C T POM121 3'UTR 0.29 TCGA-19-1787-01 7 73245948 73245948 G A CLDN4 Silent p.T139T 0.34 TCGA-19-1787-01 7 73459566 73459566 G A ELN Missense_Mutation p.G162S 0.31 unknown(0) TCGA-19-1787-01 7 73604022 73604022 C T EIF4H Silent p.F89F 0.44 TCGA-19-1787-01 7 73790477 73790477 C T CLIP2 Silent p.R582R 0.53 TCGA-19-1787-01 7 75183409 75183410 CA - HIP1 Splice_Site p.X720_splice 0.47 TCGA-19-1787-01 7 77261720 77261720 G A PTPN12 Silent p.S684S 0.36 TCGA-19-1787-01 7 82545069 82545069 C T PCLO Missense_Mutation p.R4078H 0.35 unknown(0) TCGA-19-1787-01 7 87035754 87035754 G A ABCB4 Silent p.L1119L 0.41 TCGA-19-1787-01 7 95726826 95726826 G A DYNC1I1 Missense_Mutation p.R620Q 0.40 deleterious(0.02) benign(0.158) TCGA-19-1787-01 7 98540640 98540640 C T TRRAP Silent p.N1491N 0.31 TCGA-19-1787-01 7 98547810 98547810 C T TRRAP Silent p.I1746I 0.39 TCGA-19-1787-01 7 98586467 98586467 G A TRRAP Missense_Mutation p.D3161N 0.42 probably_damaging(0.989) TCGA-19-1787-01 7 99226996 99226996 G A ZSCAN25 Missense_Mutation p.G330S 0.33 tolerated(0.66) benign(0.004) TCGA-19-1787-01 7 99697273 99697273 C T MCM7 Missense_Mutation p.R72H 0.46 tolerated(0.29) probably_damaging(0.987) TCGA-19-1787-01 8 125074272 125074272 C T FER1L6 Silent p.H1109H 0.75 TCGA-19-1787-01 8 125989904 125989904 A C ZNF572 Missense_Mutation p.E465A 0.03 deleterious(0.01) possibly_damaging(0.825) TCGA-19-1787-01 8 126079941 126079941 G A KIAA0196 Missense_Mutation p.R391C 0.81 deleterious(0) probably_damaging(0.976) TCGA-19-1787-01 8 134072376 134072376 C T SLA Silent p.A50A 0.18 TCGA-19-1787-01 8 139890010 139890010 C T COL22A1 Missense_Mutation p.R214Q 0.79 unknown(0) TCGA-19-1787-01 8 142367484 142367484 G A GPR20 Silent p.A180A 0.86 TCGA-19-1787-01 8 144671607 144671607 C T EEF1D Silent p.P215P 0.62 TCGA-19-1787-01 8 144776080 144776080 C T ZNF707 Missense_Mutation p.R166C 0.70 deleterious(0) benign(0.446) TCGA-19-1787-01 8 144893127 144893127 C T SCRIB Missense_Mutation p.E408K 0.54 probably_damaging(0.943) TCGA-19-1787-01 8 144990540 144990540 G A PLEC Silent p.S4620S 0.76 TCGA-19-1787-01 8 144993917 144993917 C T PLEC Missense_Mutation p.A3495T 0.66 probably_damaging(0.994) TCGA-19-1787-01 8 145024806 145024806 G A PLEC Silent p.G23G 0.67 TCGA-19-1787-01 8 145542516 145542516 C T DGAT1 Missense_Mutation p.A133T 0.21 tolerated(0.17) benign(0.296) TCGA-19-1787-01 8 145639425 145639425 G A SLC39A4 Missense_Mutation p.R402C 0.83 deleterious(0.03) benign(0.057) TCGA-19-1787-01 8 145830978 145830978 C T ARHGAP39 Missense_Mutation p.E8K 0.82 deleterious_low_confidence(0.01) benign(0.439) TCGA-19-1787-01 8 16850730 16850730 G A FGF20 Missense_Mutation p.R163C 0.70 deleterious(0) probably_damaging(0.975) TCGA-19-1787-01 8 17159742 17159742 C T MTMR7 Missense_Mutation p.R514Q 0.73 deleterious(0.03) probably_damaging(0.978) TCGA-19-1787-01 8 20077935 20077935 G A ATP6V1B2 3'UTR 0.07 TCGA-19-1787-01 8 2057299 2057299 G A MYOM2 Missense_Mutation p.D1053N 0.75 tolerated(0.12) probably_damaging(0.999) TCGA-19-1787-01 8 21608301 21608301 C T GFRA2 Missense_Mutation p.R198H 0.32 deleterious(0) benign(0.115) TCGA-19-1787-01 8 22864371 22864371 C T RHOBTB2 Nonsense_Mutation p.R227* 0.05 TCGA-19-1787-01 8 28989877 28989877 C T KIF13B Missense_Mutation p.A964T 0.71 tolerated(0.19) benign(0.043) TCGA-19-1787-01 8 29004944 29004944 G A KIF13B Silent p.S663S 0.76 TCGA-19-1787-01 8 37702595 37702595 C T BRF2 Missense_Mutation p.V225I 0.85 tolerated(1) benign(0.013) TCGA-19-1787-01 8 42178351 42178351 G A IKBKB Silent p.T559T 0.76 TCGA-19-1787-01 8 42958947 42958947 C T POMK Missense_Mutation p.R86C 0.58 tolerated(0.15) benign(0.007) TCGA-19-1787-01 8 6338309 6338309 C T MCPH1 Missense_Mutation p.T683M 0.69 deleterious(0) probably_damaging(1) TCGA-19-1787-01 8 71593386 71593387 - T XKR9 Frame_Shift_Ins p.H34Pfs*2 0.45 TCGA-19-1787-01 8 81905391 81905391 G A PAG1 Silent p.V24V 0.42 TCGA-19-1787-01 8 94935158 94935158 G A PDP1 Missense_Mutation p.D316N 0.68 deleterious(0) probably_damaging(1) TCGA-19-1787-01 8 95538910 95538910 A - KIAA1429 Frame_Shift_Del p.L521* 0.19 TCGA-19-1787-01 9 112211255 112211255 G A PTPN3 Intron 0.41 TCGA-19-1787-01 9 125240071 125240071 G A OR1J1 Silent p.I45I 0.77 TCGA-19-1787-01 9 126219630 126219630 C T DENND1A Missense_Mutation p.A395T 0.11 deleterious(0.02) probably_damaging(0.98) TCGA-19-1787-01 9 129851337 129851337 C T ANGPTL2 Missense_Mutation p.G455R 0.73 deleterious(0) probably_damaging(1) TCGA-19-1787-01 9 130500995 130500995 C T SH2D3C 3'UTR 0.92 TCGA-19-1787-01 9 132631247 132631247 C T USP20 Silent p.P414P 0.77 TCGA-19-1787-01 9 133952592 133952592 G A LAMC3 Silent p.A1216A 0.32 TCGA-19-1787-01 9 136660834 136660834 G A VAV2 Missense_Mutation p.R353W 0.75 deleterious(0.02) probably_damaging(0.984) TCGA-19-1787-01 9 136677271 136677271 C T VAV2 Missense_Mutation p.E173K 0.68 deleterious(0) probably_damaging(0.998) TCGA-19-1787-01 9 137622153 137622153 C T COL5A1 Silent p.D332D 0.29 TCGA-19-1787-01 9 137982124 137982124 C T OLFM1 Silent p.V60V 0.68 TCGA-19-1787-01 9 138379028 138379028 G A PPP1R26 Missense_Mutation p.R891H 0.20 deleterious(0.01) probably_damaging(0.923) TCGA-19-1787-01 9 138825059 138825059 C T UBAC1 3'UTR 0.75 TCGA-19-1787-01 9 139815652 139815652 G A TRAF2 Missense_Mutation p.A375T 0.77 deleterious(0.03) possibly_damaging(0.669) TCGA-19-1787-01 9 140093530 140093530 C T TPRN Missense_Mutation p.R545H 0.79 deleterious(0) probably_damaging(0.999) TCGA-19-1787-01 9 140129174 140129174 C T SLC34A3 Silent p.S442S 0.68 TCGA-19-1787-01 9 27455387 27455387 C A MOB3B Missense_Mutation p.E54D 0.74 deleterious(0.02) probably_damaging(0.983) TCGA-19-1787-01 9 3225248 3225251 CATC - RFX3 Frame_Shift_Del p.D681Kfs*18 0.62 TCGA-19-1787-01 9 32631859 32631859 C T TAF1L Missense_Mutation p.R1240Q 0.73 deleterious(0.04) benign(0.133) TCGA-19-1787-01 9 34621537 34621537 C T ARID3C Missense_Mutation p.R386H 0.68 deleterious(0.03) probably_damaging(0.912) TCGA-19-1787-01 9 377067 377067 G A DOCK8 Missense_Mutation p.E766K 0.74 deleterious(0) probably_damaging(0.92) TCGA-19-1787-01 9 71628703 71628703 C T PRKACG Silent p.P102P 0.63 TCGA-19-1787-01 9 71628902 71628902 T A PRKACG Missense_Mutation p.Q36L 0.15 deleterious(0.02) benign(0.058) TCGA-19-1787-01 9 74360261 74360261 C T TMEM2 Missense_Mutation p.R236Q 0.68 tolerated(0.56) benign(0.001) TCGA-19-1787-01 9 77376979 77376979 G A TRPM6 Silent p.F1536F 0.67 TCGA-19-1787-01 9 77415270 77415270 G A TRPM6 Missense_Mutation p.S713L 0.76 deleterious(0) possibly_damaging(0.907) TCGA-19-1787-01 9 95362679 95362680 TT - CENPP Intron 0.48 TCGA-19-1787-01 9 96428302 96428302 C T PHF2 Missense_Mutation p.T716M 0.36 tolerated(0.13) unknown(0) TCGA-19-1787-01 X 103294870 103294870 C T H2BFM Silent p.R109R 0.44 TCGA-19-1787-01 X 106776753 106776753 C T FRMPD3 Silent p.I123I 0.81 TCGA-19-1787-01 X 106803491 106803491 G A FRMPD3 Missense_Mutation p.R289Q 0.83 tolerated(0.38) probably_damaging(0.999) TCGA-19-1787-01 X 110489775 110489775 G A CAPN6 3'UTR 0.87 TCGA-19-1787-01 X 110489890 110489890 C T CAPN6 Missense_Mutation p.R614H 0.82 tolerated(0.13) possibly_damaging(0.84) TCGA-19-1787-01 X 111090567 111090567 C T TRPC5 Missense_Mutation p.R492H 0.80 deleterious(0) probably_damaging(0.991) TCGA-19-1787-01 X 119760539 119760540 - T C1GALT1C1 Frame_Shift_Ins p.D162Gfs*18 0.51 TCGA-19-1787-01 X 125686656 125686656 T A DCAF12L1 5'UTR 0.41 TCGA-19-1787-01 X 12837794 12837794 G A PRPS2 Silent p.A236A 0.80 TCGA-19-1787-01 X 128624156 128624156 C T SMARCA1 Missense_Mutation p.R610H 0.83 deleterious(0) probably_damaging(1) TCGA-19-1787-01 X 12939664 12939664 G A TLR8 Silent p.T835T 0.82 TCGA-19-1787-01 X 138664505 138664505 C T MCF2 3'UTR 0.86 TCGA-19-1787-01 X 147063064 147063064 G A FMR1NB Missense_Mutation p.A48T 0.80 tolerated(0.29) possibly_damaging(0.695) TCGA-19-1787-01 X 148797671 148797671 T C MAGEA11 Silent p.P175P 0.41 TCGA-19-1787-01 X 151820163 151820163 G A GABRQ Missense_Mutation p.R359Q 0.90 tolerated(0.59) benign(0.221) TCGA-19-1787-01 X 152821594 152821594 G A ATP2B3 Missense_Mutation p.A716T 0.12 deleterious(0) probably_damaging(0.99) TCGA-19-1787-01 X 153699523 153699523 G A PLXNA3 Silent p.T1744T 0.69 TCGA-19-1787-01 X 154014611 154014611 G A MPP1 Missense_Mutation p.A182V 0.72 deleterious(0.04) probably_damaging(1) TCGA-19-1787-01 X 229492 229492 C T GTPBP6 Missense_Mutation p.R57H 0.29 deleterious(0.02) probably_damaging(0.97) TCGA-19-1787-01 X 40570487 40570487 C T MED14 Missense_Mutation p.R319Q 0.83 deleterious(0) probably_damaging(0.997) TCGA-19-1787-01 X 41007677 41007677 G A USP9X Missense_Mutation p.R492H 0.30 deleterious(0) probably_damaging(0.966) TCGA-19-1787-01 X 41073855 41073855 G A USP9X Missense_Mutation p.V1742I 0.81 tolerated(0.17) benign(0.304) TCGA-19-1787-01 X 47102865 47102865 C T USP11 Missense_Mutation p.R595W 0.78 deleterious(0.02) probably_damaging(0.999) TCGA-19-1787-01 X 49034779 49034779 G A PRICKLE3 Missense_Mutation p.R204C 0.81 deleterious(0) probably_damaging(0.995) TCGA-19-1787-01 X 54259388 54259388 C T WNK3 Missense_Mutation p.R1565H 0.81 deleterious(0) probably_damaging(0.943) TCGA-19-1787-01 X 57936089 57936089 C A ZXDA Nonsense_Mutation p.G256* 0.38 TCGA-19-1787-01 X 65242621 65242621 G A VSIG4 Intron 0.53 TCGA-19-1787-01 X 69519003 69519003 G A KIF4A Missense_Mutation p.R156H 0.85 tolerated(0.11) benign(0.008) TCGA-19-1787-01 X 70360705 70360705 C T MED12 Missense_Mutation p.R2089W 0.86 unknown(0) TCGA-19-1787-01 X 71349755 71349755 G A RGAG4 Missense_Mutation p.R546C 0.89 deleterious_low_confidence(0) unknown(0) TCGA-19-1787-01 X 71522050 71522050 C T CITED1 Silent p.A61A 0.69 TCGA-19-1787-01 X 76874314 76874314 C T ATRX Missense_Mutation p.R1803H 0.84 probably_damaging(1) TCGA-19-1787-01 X 89177195 89177195 C T TGIF2LX Silent p.N37N 0.75 TCGA-19-1787-01 X 92964726 92964726 G A FAM133A Missense_Mutation p.R103Q 0.93 tolerated_low_confidence(0.21) unknown(0) TCGA-19-1787-01 Y 21877814 21877814 G A KDM5D Missense_Mutation p.T703M 0.85 deleterious(0) probably_damaging(0.995) TCGA-19-1787-01 Y 21893754 21893754 G A KDM5D Silent p.D425D 0.83 TCGA-19-1787-01 Y 27190163 27190163 G A BPY2C Missense_Mutation p.T3M 0.30 possibly_damaging(0.897) TCGA-19-1790-01 10 105206806 105206806 A G CALHM2 3'UTR 0.17 TCGA-19-1790-01 10 124358594 124358594 C T DMBT1 Silent p.D1087D 0.16 TCGA-19-1790-01 10 124390740 124390740 C T DMBT1 Nonsense_Mutation p.R1968* 0.31 TCGA-19-1790-01 10 128830507 128830507 G A DOCK1 Missense_Mutation p.S591N 0.20 tolerated(0.45) benign(0.002) TCGA-19-1790-01 10 38299589 38299589 C G ZNF33A 5'UTR 0.20 TCGA-19-1790-01 10 45936078 45936078 C A ALOX5 Missense_Mutation p.F394L 0.09 deleterious(0) possibly_damaging(0.578) TCGA-19-1790-01 10 73405621 73405621 G C CDH23 Missense_Mutation p.G392R 0.18 tolerated(0.23) probably_damaging(0.998) TCGA-19-1790-01 10 92660375 92660375 G A RPP30 Missense_Mutation p.R249Q 0.09 tolerated(0.43) benign(0.005) TCGA-19-1790-01 11 105481688 105481691 AGAG - GRIA4 5'UTR 0.24 TCGA-19-1790-01 11 118955609 118955609 C T HMBS 5'UTR 0.22 TCGA-19-1790-01 11 35313908 35313908 C T SLC1A2 Silent p.V339V 0.23 TCGA-19-1790-01 11 46321656 46321656 C T CREB3L1 Silent p.S91S 0.32 TCGA-19-1790-01 11 5290821 5290821 T C HBE1 Missense_Mutation p.K60E 0.34 deleterious(0.01) benign(0.384) TCGA-19-1790-01 11 55563704 55563704 G C OR5D14 Missense_Mutation p.V225L 0.25 deleterious(0.05) benign(0.208) TCGA-19-1790-01 11 57798590 57798590 C T OR6Q1 Nonsense_Mutation p.R56* 0.29 TCGA-19-1790-01 11 59812205 59812205 A T OOSP2 Missense_Mutation p.D102V 0.19 tolerated(0.42) benign(0.023) TCGA-19-1790-01 11 6008078 6008078 G A OR52L1 Missense_Mutation p.P28L 0.22 deleterious(0.03) benign(0.01) TCGA-19-1790-01 11 62299512 62299512 T A AHNAK Missense_Mutation p.S793C 0.21 possibly_damaging(0.879) TCGA-19-1790-01 12 103246597 103246597 C T PAH Missense_Mutation p.E280K 0.23 deleterious(0.03) probably_damaging(1) TCGA-19-1790-01 12 3921184 3921184 T C PARP11 3'UTR 0.15 TCGA-19-1790-01 12 5021039 5021039 C T KCNA1 Silent p.P165P 0.18 TCGA-19-1790-01 12 52771859 52771859 G A KRT84 Missense_Mutation p.R588C 0.30 deleterious_low_confidence(0) unknown(0) TCGA-19-1790-01 12 52960950 52960950 C T KRT74 Missense_Mutation p.V465I 0.33 tolerated(0.1) benign(0.003) TCGA-19-1790-01 12 9251275 9251275 G C A2M Silent p.S593S 0.11 TCGA-19-1790-01 13 113181294 113181294 A T TUBGCP3 Missense_Mutation p.M506K 0.27 tolerated(0.29) benign(0) TCGA-19-1790-01 13 25363875 25363875 C A RNF17 Missense_Mutation p.N300K 0.11 tolerated(1) benign(0.001) TCGA-19-1790-01 13 32903619 32903619 A T BRCA2 Missense_Mutation p.D224V 0.15 deleterious(0) possibly_damaging(0.687) TCGA-19-1790-01 13 33679600 33679600 C A STARD13 3'UTR 0.20 TCGA-19-1790-01 14 20482677 20482677 T C OR4K14 Missense_Mutation p.I226V 0.23 tolerated(1) benign(0.001) TCGA-19-1790-01 14 22409365 22409365 A G TRAV9-2 5'UTR 0.40 TCGA-19-1790-01 14 22616363 22616363 A T TRAV27 Missense_Mutation p.E35V 0.23 deleterious(0) possibly_damaging(0.639) TCGA-19-1790-01 14 24886187 24886187 G A NYNRIN Silent p.L1744L 0.11 TCGA-19-1790-01 14 38061688 38061688 C T FOXA1 Missense_Mutation p.V101M 0.39 tolerated(0.22) benign(0.25) TCGA-19-1790-01 15 101775678 101775678 G T CHSY1 Missense_Mutation p.S142Y 0.21 deleterious(0.01) probably_damaging(0.929) TCGA-19-1790-01 15 102313082 102313082 G T RN7SL209P 3'Flank 0.18 TCGA-19-1790-01 15 26866466 26866466 C G GABRB3 Silent p.G152G 0.09 TCGA-19-1790-01 15 57543615 57543615 C G TCF12 Missense_Mutation p.H394Q 0.34 tolerated(0.15) probably_damaging(0.999) TCGA-19-1790-01 16 2160687 2160687 C T PKD1 Missense_Mutation p.R1494H 0.24 benign(0.004) TCGA-19-1790-01 16 50349362 50349362 G T ADCY7 Missense_Mutation p.R1063S 0.26 tolerated(0.07) possibly_damaging(0.608) TCGA-19-1790-01 16 55907825 55907825 C T CES5A Silent p.P95P 0.15 TCGA-19-1790-01 16 67226947 67226947 C G E2F4 Missense_Mutation p.A94G 0.22 tolerated(0.27) benign(0.008) TCGA-19-1790-01 17 2282856 2282856 G A SGSM2 3'UTR 0.09 TCGA-19-1790-01 17 27229819 27229819 C A DHRS13 Intron 0.15 TCGA-19-1790-01 17 33771684 33771684 C T SLFN13 Missense_Mutation p.R339H 0.20 tolerated(0.58) benign(0.384) TCGA-19-1790-01 17 37985642 37985642 C G IKZF3 Missense_Mutation p.G54A 0.33 tolerated(0.18) benign(0.002) TCGA-19-1790-01 17 42085912 42085912 C A NAGS Missense_Mutation p.N516K 0.31 tolerated(0.12) possibly_damaging(0.783) TCGA-19-1790-01 17 80274632 80274632 C T CD7 Missense_Mutation p.R103H 0.20 tolerated(0.43) benign(0.004) TCGA-19-1790-01 17 80559442 80559442 C A FOXK2 3'UTR 0.15 TCGA-19-1790-01 18 120798 120798 C A ROCK1P1 RNA 0.32 TCGA-19-1790-01 18 21089223 21089223 C G C18orf8 Missense_Mutation p.Q130E 0.26 tolerated(0.22) benign(0.004) TCGA-19-1790-01 18 2700592 2700592 A T SMCHD1 Missense_Mutation p.R466S 0.14 deleterious(0.04) probably_damaging(0.996) TCGA-19-1790-01 18 28968938 28968938 G A DSG4 Silent p.S158S 0.22 TCGA-19-1790-01 18 47405384 47405384 G T MYO5B Missense_Mutation p.N1069K 0.22 tolerated(0.26) possibly_damaging(0.489) TCGA-19-1790-01 18 57105364 57105364 C T CCBE1 Silent p.A322A 0.19 TCGA-19-1790-01 18 67718720 67718720 G T RTTN Silent p.L1750L 0.30 TCGA-19-1790-01 18 76757007 76757007 C - SALL3 Frame_Shift_Del p.Q1197Rfs*9 0.28 TCGA-19-1790-01 19 1619469 1619469 C G TCF3 Missense_Mutation p.S391T 0.24 tolerated(0.12) benign(0.003) TCGA-19-1790-01 19 17844118 17844118 C T MAP1S Nonsense_Mutation p.Q969* 0.11 TCGA-19-1790-01 19 35512755 35512755 C A GRAMD1A Silent p.G580G 0.06 TCGA-19-1790-01 19 36673611 36673611 G A ZNF565 Silent p.Y419Y 0.22 TCGA-19-1790-01 19 43689016 43689016 G A PSG5 Silent p.D116D 0.19 TCGA-19-1790-01 19 47879753 47879753 C T DHX34 Silent p.F845F 0.30 TCGA-19-1790-01 19 53645153 53645153 T A ZNF347 Missense_Mutation p.I311F 0.23 deleterious(0.04) probably_damaging(0.986) TCGA-19-1790-01 19 55447703 55447703 G A NLRP7 Silent p.I742I 0.19 TCGA-19-1790-01 1 11190804 11190804 C T MTOR Missense_Mutation p.E1799K 0.27 tolerated(0.08) probably_damaging(0.996) TCGA-19-1790-01 1 12837525 12837525 C T PRAMEF12 Missense_Mutation p.P412L 0.05 deleterious(0) probably_damaging(0.991) TCGA-19-1790-01 1 152080460 152080460 G A TCHH Missense_Mutation p.R1745C 0.34 unknown(0) TCGA-19-1790-01 1 16330879 16330879 C A C1orf64 Silent p.S27S 0.14 TCGA-19-1790-01 1 182922239 182922239 G A SHCBP1L Silent p.P10P 0.21 TCGA-19-1790-01 1 202418229 202418229 G A PPP1R12B Missense_Mutation p.G594R 0.17 tolerated(0.1) probably_damaging(0.996) TCGA-19-1790-01 1 20945033 20945033 G A CDA Missense_Mutation p.G138E 0.28 deleterious(0.02) probably_damaging(0.95) TCGA-19-1790-01 1 22163397 22163397 T A HSPG2 Missense_Mutation p.E3418V 0.25 possibly_damaging(0.861) TCGA-19-1790-01 1 27099916 27099916 C T ARID1A Silent p.G1265G 0.22 TCGA-19-1790-01 1 44687113 44687113 G C ERI3 3'UTR 0.11 TCGA-19-1790-01 1 85624724 85624724 G C SYDE2 Missense_Mutation p.N1098K 0.23 tolerated(0.07) benign(0.009) TCGA-19-1790-01 1 86377068 86377068 C T COL24A1 Missense_Mutation p.E871K 0.26 deleterious(0.01) probably_damaging(0.99) TCGA-19-1790-01 20 43936878 43936878 G T RBPJL Missense_Mutation p.G40C 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.695) TCGA-19-1790-01 21 32253207 32253207 G A KRTAP11-1 3'UTR 0.11 TCGA-19-1790-01 22 38541510 38541510 C G PLA2G6 Missense_Mutation p.W120C 0.08 deleterious(0) probably_damaging(1) TCGA-19-1790-01 2 113999249 113999249 G T PAX8 Missense_Mutation p.P219H 0.30 tolerated(0.1) benign(0.219) TCGA-19-1790-01 2 179407009 179407009 C G TTN Missense_Mutation p.E32492Q 0.22 TCGA-19-1790-01 2 179634616 179634616 T - TTN Frame_Shift_Del p.T2898Lfs*18 0.34 TCGA-19-1790-01 2 193049126 193049126 T C TMEFF2 Silent p.K122K 0.17 TCGA-19-1790-01 2 220238888 220238888 A G DNPEP 3'UTR 0.43 TCGA-19-1790-01 2 223096854 223096854 G C PAX3 Missense_Mutation p.D245E 0.30 deleterious(0.01) probably_damaging(0.998) TCGA-19-1790-01 2 240985270 240985270 C T OR6B3 Missense_Mutation p.V74M 0.25 deleterious(0.01) benign(0.068) TCGA-19-1790-01 2 241066064 241066064 T - MYEOV2 Frame_Shift_Del p.K225Nfs*25 0.16 TCGA-19-1790-01 2 241069334 241069334 C T MYEOV2 Silent p.S125S 0.09 TCGA-19-1790-01 2 242683078 242683078 A G D2HGDH Missense_Mutation p.S178G 0.08 deleterious(0.02) benign(0.035) TCGA-19-1790-01 2 25064196 25064196 C A ADCY3 Missense_Mutation p.L376F 0.18 deleterious(0.02) probably_damaging(0.978) TCGA-19-1790-01 2 26805768 26805768 G A CIB4 Missense_Mutation p.S151L 0.38 deleterious(0) benign(0.269) TCGA-19-1790-01 2 70188854 70188854 C A ASPRV1 5'UTR 0.17 TCGA-19-1790-01 2 73316179 73316179 T C RAB11FIP5 Silent p.K232K 0.26 TCGA-19-1790-01 3 135721607 135721607 G T PPP2R3A Nonsense_Mutation p.G423* 0.31 TCGA-19-1790-01 3 141006223 141006223 G T ACPL2 Nonsense_Mutation p.E145* 0.32 TCGA-19-1790-01 3 155198910 155198910 T A PLCH1 Missense_Mutation p.K1643N 0.24 tolerated_low_confidence(0.47) benign(0.005) TCGA-19-1790-01 3 168834168 168834168 C T MECOM Missense_Mutation p.G375S 0.33 tolerated(0.83) possibly_damaging(0.55) TCGA-19-1790-01 3 178928108 178928127 TGGATCAAATCCAAATAAAG - PIK3CA Splice_Site p.X463_splice 0.22 TCGA-19-1790-01 3 186394875 186394875 C A HRG Missense_Mutation p.H261N 0.23 tolerated(0.21) benign(0.009) TCGA-19-1790-01 3 52393305 52393305 C G DNAH1 Missense_Mutation p.T1437S 0.22 benign(0.027) TCGA-19-1790-01 3 98216751 98216751 C G OR5K2 Missense_Mutation p.A76G 0.20 deleterious(0.02) benign(0.053) TCGA-19-1790-01 4 155490852 155490852 C T FGB Missense_Mutation p.A382V 0.26 tolerated(0.1) probably_damaging(0.984) TCGA-19-1790-01 4 1807639 1807639 G A FGFR3 Missense_Mutation p.R605Q 0.20 deleterious(0) benign(0.069) TCGA-19-1790-01 4 1986590 1986590 G A NELFA Silent p.S338S 0.10 TCGA-19-1790-01 4 66361196 66361196 T A EPHA5 Missense_Mutation p.S326C 0.28 deleterious(0) probably_damaging(0.987) TCGA-19-1790-01 5 138716553 138716553 C A SLC23A1 Missense_Mutation p.A111S 0.13 tolerated(0.27) benign(0.14) TCGA-19-1790-01 5 19503108 19503108 G C CDH18 Missense_Mutation p.D541E 0.30 deleterious(0) benign(0.279) TCGA-19-1790-01 5 37064646 37064646 A G NIPBL Silent p.K2689K 0.13 TCGA-19-1790-01 5 5200249 5200249 G T ADAMTS16 Missense_Mutation p.G440C 0.42 deleterious(0) probably_damaging(1) TCGA-19-1790-01 5 56207282 56207282 A G SETD9 Missense_Mutation p.S129G 0.22 deleterious(0) probably_damaging(0.938) TCGA-19-1790-01 6 119653128 119653128 C A MAN1A1 Intron 0.25 TCGA-19-1790-01 6 152163775 152163775 G T ESR1 Missense_Mutation p.A166S 0.23 tolerated(0.76) benign(0.002) TCGA-19-1790-01 6 31915244 31915244 C T CFB Missense_Mutation p.R704W 0.18 deleterious(0) possibly_damaging(0.728) TCGA-19-1790-01 6 33740529 33740529 C A LEMD2 Missense_Mutation p.R463L 0.14 deleterious(0) probably_damaging(0.935) TCGA-19-1790-01 6 4068936 4068938 TTG - FAM217A In_Frame_Del p.Q507del 0.39 TCGA-19-1790-01 6 49754282 49754282 G T PGK2 Missense_Mutation p.P207T 0.21 deleterious(0) possibly_damaging(0.889) TCGA-19-1790-01 7 100350019 100350019 A - ZAN Frame_Shift_Del p.K765Nfs*236 0.10 TCGA-19-1790-01 7 100551526 100551526 C A MUC3A Missense_Mutation p.L93I 0.13 tolerated(0.16) possibly_damaging(0.646) TCGA-19-1790-01 7 100674925 100674925 C T MUC17 Silent p.V76V 0.15 TCGA-19-1790-01 7 113558410 113558410 A C PPP1R3A Silent p.S214S 0.19 TCGA-19-1790-01 7 134552504 134552504 G A CALD1 Missense_Mutation p.R7H 0.16 deleterious(0) unknown(0) TCGA-19-1790-01 7 38254036 38254039 GTAA - STARD3NL Splice_Site p.X101_splice 0.28 TCGA-19-1790-01 7 38516553 38516553 C T AMPH Missense_Mutation p.R138H 0.18 deleterious(0) probably_damaging(1) TCGA-19-1790-01 7 42949845 42949845 G C C7orf25 Missense_Mutation p.L277V 0.09 tolerated(0.32) benign(0.005) TCGA-19-1790-01 7 45632382 45632382 G A ADCY1 Missense_Mutation p.V222I 0.21 tolerated(0.69) benign(0.003) TCGA-19-1790-01 7 47408183 47408183 G A TNS3 Missense_Mutation p.S687F 0.22 tolerated(0.71) benign(0.006) TCGA-19-1790-01 7 53103674 53103674 G C POM121L12 Missense_Mutation p.G104R 0.22 tolerated(0.58) probably_damaging(0.991) TCGA-19-1790-01 7 75517829 75517829 T C RHBDD2 3'UTR 0.20 TCGA-19-1790-01 7 77402516 77402516 C T RSBN1L Missense_Mutation p.R560C 0.18 deleterious(0) probably_damaging(1) TCGA-19-1790-01 7 91668077 91668078 - GA AKAP9 Frame_Shift_Ins p.R1562Efs*20 0.24 TCGA-19-1790-01 8 110131345 110131345 G A TRHR Silent p.V286V 0.04 TCGA-19-1790-01 8 116599737 116599737 C - TRPS1 Frame_Shift_Del p.E731Nfs*33 0.31 TCGA-19-1790-01 8 116632180 116632180 C T TRPS1 Missense_Mutation p.E49K 0.06 deleterious_low_confidence(0) benign(0.189) TCGA-19-1790-01 8 41530099 41530099 G A ANK1 Silent p.D1664D 0.12 TCGA-19-1790-01 9 114090010 114090010 T C OR2K2 Missense_Mutation p.K235R 0.20 deleterious(0.02) possibly_damaging(0.85) TCGA-19-1790-01 9 38586290 38586290 T C ANKRD18A Missense_Mutation p.M713V 0.15 tolerated(0.13) benign(0.001) TCGA-19-1790-01 X 36007487 36007487 G A CXorf22 Missense_Mutation p.G922D 0.55 deleterious(0.01) possibly_damaging(0.904) TCGA-19-1790-01 X 69250324 69250324 T C EDA Silent p.A249A 0.12 TCGA-19-1790-01 X 72674301 72674301 G A CDX4 Silent p.S245S 0.41 TCGA-19-1790-01 X 8433516 8433516 G T VCX3B Nonsense_Mutation p.G9* 0.37 TCGA-19-1790-01 X 91134367 91134367 A T PCDH11X Intron 0.54 TCGA-19-1790-01 X 99839977 99839977 C A TNMD 5'UTR 0.08 TCGA-19-2619-01 10 1229080 1229080 C T ADARB2 3'UTR 0.52 TCGA-19-2619-01 10 33000595 33000595 T C C10ORF68 Missense_Mutation p.S143P 0.76 tolerated(0.1) benign(0.181) TCGA-19-2619-01 10 4873008 4873008 C T AKR1E2 Missense_Mutation p.R61W 0.35 deleterious(0) probably_damaging(1) TCGA-19-2619-01 10 7762869 7762869 C T ITIH2 Silent p.P227P 0.30 TCGA-19-2619-01 11 65271648 65271648 T C MALAT1 RNA 0.44 TCGA-19-2619-01 11 88911360 88911360 G T TYR Missense_Mutation p.W80L 0.06 deleterious(0) probably_damaging(0.999) TCGA-19-2619-01 12 78591133 78591133 C G NAV3 Missense_Mutation p.S2111C 0.32 deleterious(0) probably_damaging(0.999) TCGA-19-2619-01 12 80014954 80014954 G A PAWR Nonsense_Mutation p.Q184* 0.36 TCGA-19-2619-01 13 32735289 32735289 G A FRY Missense_Mutation p.R598K 0.46 deleterious(0.04) probably_damaging(0.998) TCGA-19-2619-01 13 99042246 99042246 C T FARP1 Silent p.A297A 0.45 TCGA-19-2619-01 14 94041533 94041533 G C UNC79 Missense_Mutation p.A557P 0.30 tolerated(0.39) possibly_damaging(0.59) TCGA-19-2619-01 15 28629364 28629364 G A GOLGA8F Silent p.L233L 0.25 TCGA-19-2619-01 15 93567832 93567834 CTC - CHD2 In_Frame_Del p.P1796del 0.44 TCGA-19-2619-01 16 23570883 23570883 C T UBFD1 Silent p.I150I 0.37 TCGA-19-2619-01 16 69748919 69748928 ATGAACACTC TTGAAG NQO1 Frame_Shift_Del p.R119Pfs*46 0.19 TCGA-19-2619-01 17 19641725 19641725 C T ALDH3A1 Missense_Mutation p.E420K 0.38 deleterious(0.03) benign(0.06) TCGA-19-2619-01 17 34072169 34072169 G A GAS2L2 Missense_Mutation p.R783W 0.39 deleterious(0) probably_damaging(1) TCGA-19-2619-01 17 695048 695048 G A RNMTL1 Silent p.L334L 0.04 TCGA-19-2619-01 17 72915620 72915620 C T USH1G Silent p.K437K 0.27 TCGA-19-2619-01 18 33060423 33060423 G A INO80C Silent p.N123N 0.20 TCGA-19-2619-01 18 61310407 61310407 A T SERPINB4 Silent p.A70A 0.25 TCGA-19-2619-01 18 72223637 72223637 C T CNDP1 Missense_Mutation p.P30L 0.66 tolerated(0.1) benign(0.007) TCGA-19-2619-01 19 19459728 19459728 G A MAU2 Missense_Mutation p.D447N 0.24 tolerated(0.1) possibly_damaging(0.636) TCGA-19-2619-01 19 50792885 50792885 C T MYH14 Missense_Mutation p.R1649W 0.42 deleterious(0) probably_damaging(0.998) TCGA-19-2619-01 19 5587916 5587916 G A SAFB2 Silent p.D867D 0.54 TCGA-19-2619-01 19 8190851 8190851 C T FBN3 Missense_Mutation p.V886I 0.40 tolerated(0.2) benign(0.003) TCGA-19-2619-01 1 151774511 151774511 G A LINGO4 Silent p.L224L 0.57 TCGA-19-2619-01 1 156011962 156011962 G C UBQLN4 Silent p.L444L 0.14 TCGA-19-2619-01 1 156021545 156021545 C G UBQLN4 Missense_Mutation p.G71A 0.46 deleterious(0) unknown(0) TCGA-19-2619-01 1 156501015 156501015 G C IQGAP3 Missense_Mutation p.I1376M 0.10 deleterious(0.02) benign(0.197) TCGA-19-2619-01 1 156834161 156834161 G A NTRK1 Silent p.Q76Q 0.72 TCGA-19-2619-01 1 156917714 156917714 C T ARHGEF11 Missense_Mutation p.D730N 0.08 deleterious(0.01) probably_damaging(0.987) TCGA-19-2619-01 1 169489788 169489788 G A F5 Nonsense_Mutation p.R2055* 0.45 TCGA-19-2619-01 1 202287759 202287759 C A LGR6 Silent p.A776A 0.80 TCGA-19-2619-01 1 206711530 206711530 C T RASSF5 Missense_Mutation p.R163C 0.20 deleterious(0) possibly_damaging(0.861) TCGA-19-2619-01 1 206902080 206902080 G A MAPKAPK2 Missense_Mutation p.R102H 0.17 deleterious(0.03) possibly_damaging(0.902) TCGA-19-2619-01 1 216737723 216737723 C G ESRRG Missense_Mutation p.D246H 0.33 tolerated(0.08) possibly_damaging(0.466) TCGA-19-2619-01 1 54474629 54474629 C T LDLRAD1 3'UTR 0.77 TCGA-19-2619-01 1 91843657 91843657 C T HFM1 Silent p.Q440Q 0.56 TCGA-19-2619-01 20 4776462 4776462 C T RASSF2 Missense_Mutation p.G96R 0.42 tolerated(0.17) benign(0.014) TCGA-19-2619-01 22 19865620 19865620 C T TXNRD2 Missense_Mutation p.G480R 0.44 deleterious(0) probably_damaging(0.982) TCGA-19-2619-01 22 31492853 31492853 G A SMTN Missense_Mutation p.V666I 0.28 tolerated(0.39) benign(0.014) TCGA-19-2619-01 2 102486218 102486218 G A MAP4K4 Silent p.G785G 0.67 TCGA-19-2619-01 2 203806678 203806678 C T CARF Missense_Mutation p.S18L 0.41 deleterious_low_confidence(0.02) benign(0.281) TCGA-19-2619-01 2 207406796 207406796 C A ADAM23 Nonsense_Mutation p.Y198* 0.04 TCGA-19-2619-01 2 3193249 3193249 G A TSSC1 Silent p.I340I 0.40 TCGA-19-2619-01 2 96259769 96259769 A G TRIM43 Intron 0.34 TCGA-19-2619-01 3 100568897 100568897 G A ABI3BP Missense_Mutation p.T456M 0.38 deleterious(0) possibly_damaging(0.791) TCGA-19-2619-01 3 108205332 108205332 A - MYH15 Frame_Shift_Del p.C325Afs*50 0.34 TCGA-19-2619-01 3 138374369 138374369 C T PIK3CB Splice_Site p.X1026_splice 0.41 TCGA-19-2619-01 3 147128425 147128425 G A ZIC1 Missense_Mutation p.E176K 0.39 deleterious(0.02) benign(0.077) TCGA-19-2619-01 4 147561770 147561770 G A POU4F2 Missense_Mutation p.R347H 0.40 deleterious(0) possibly_damaging(0.733) TCGA-19-2619-01 4 26432722 26432722 G A RBPJ 3'UTR 0.47 TCGA-19-2619-01 5 140203141 140203141 G A PCDHA5 Missense_Mutation p.R594H 0.46 tolerated_low_confidence(0.07) benign(0.276) TCGA-19-2619-01 5 176794018 176794018 C A RGS14 Silent p.R156R 0.49 TCGA-19-2619-01 5 63257205 63257205 G A HTR1A Silent p.A114A 0.36 TCGA-19-2619-01 5 825284 825284 C T ZDHHC11 Missense_Mutation p.A340T 0.05 tolerated_low_confidence(0.3) probably_damaging(0.956) TCGA-19-2619-01 6 161127557 161127557 C T PLG Silent p.D56D 0.72 TCGA-19-2619-01 6 43109925 43109925 G A PTK7 Silent p.Q653Q 0.10 TCGA-19-2619-01 6 43141721 43141721 C T SRF Missense_Mutation p.T217I 0.46 deleterious(0) possibly_damaging(0.507) TCGA-19-2619-01 6 52013759 52013759 C T MIR133B RNA 0.44 TCGA-19-2619-01 6 56566691 56566691 G A DST Missense_Mutation p.R106C 0.28 possibly_damaging(0.854) TCGA-19-2619-01 7 64168371 64168371 G A ZNF107 Silent p.Q563Q 0.22 TCGA-19-2619-01 7 94043012 94043012 G T COL1A2 Missense_Mutation p.G523V 0.31 unknown(0) TCGA-19-2619-01 8 120598445 120598445 G A ENPP2 Missense_Mutation p.R502C 0.42 deleterious(0) probably_damaging(0.977) TCGA-19-2619-01 8 19690804 19690804 C T INTS10 Missense_Mutation p.T501M 0.55 deleterious(0.01) benign(0.417) TCGA-19-2619-01 8 82196809 82196809 C A FABP5 3'UTR 0.05 TCGA-19-2619-01 9 34661839 34661839 C A IL11RA 3'UTR 0.85 TCGA-19-2619-01 X 101141702 101141702 T G ZMAT1 Silent p.A169A 0.38 TCGA-19-2619-01 X 117722099 117722099 G T DOCK11 Splice_Site p.X599_splice 0.41 TCGA-19-2619-01 X 119004909 119004909 C T RNF113A Missense_Mutation p.R223H 0.44 deleterious(0.02) probably_damaging(0.924) TCGA-19-2619-01 X 130220576 130220576 C T ARHGAP36 Missense_Mutation p.P475S 0.42 tolerated(0.15) probably_damaging(0.999) TCGA-19-2619-01 X 153881755 153881755 G A CTAG2 Missense_Mutation p.T12M 0.57 deleterious_low_confidence(0.03) unknown(0) TCGA-19-2619-01 X 17745612 17745612 C T NHS Missense_Mutation p.P1108L 0.40 deleterious(0.03) benign(0.018) TCGA-19-2619-01 X 48751096 48751096 G A TIMM17B Silent p.P195P 0.40 TCGA-19-2619-01 X 91132985 91132985 C A PCDH11X Missense_Mutation p.N582K 0.38 deleterious(0) probably_damaging(0.933) TCGA-19-2620-01 10 104638210 104638210 C T AS3MT Missense_Mutation p.R229C 0.51 tolerated(0.17) possibly_damaging(0.528) TCGA-19-2620-01 11 125542539 125542539 C T ACRV1 Silent p.T249T 0.33 TCGA-19-2620-01 11 18231800 18231800 G A RP11-113D6.10 3'UTR 0.38 TCGA-19-2620-01 11 55587445 55587445 T A OR5D18 Missense_Mutation p.F114I 0.30 tolerated(0.12) benign(0.018) TCGA-19-2620-01 12 112926910 112926910 G C PTPN11 Missense_Mutation p.Q510H 0.30 deleterious(0) probably_damaging(0.968) TCGA-19-2620-01 12 124393905 124393905 G A DNAH10 Missense_Mutation p.V3187M 0.40 benign(0.003) TCGA-19-2620-01 12 131475583 131475583 C T GPR133 Missense_Mutation p.T257M 0.37 deleterious(0) benign(0.4) TCGA-19-2620-01 12 43833726 43833726 G A ADAMTS20 Nonsense_Mutation p.R813* 0.30 TCGA-19-2620-01 12 48723149 48723149 G A H1FNT Silent p.A25A 0.33 TCGA-19-2620-01 12 58022670 58022670 G A B4GALNT1 Silent p.S276S 0.33 TCGA-19-2620-01 12 6647415 6647416 CA - GAPDH 3'UTR 0.36 TCGA-19-2620-01 14 105859121 105859121 C G PACS2 Silent p.G807G 0.22 TCGA-19-2620-01 14 106518596 106518596 C T IGHV3-7 Nonsense_Mutation p.W52* 0.29 TCGA-19-2620-01 14 47389235 47389235 A G MDGA2 Missense_Mutation p.Y740H 0.40 deleterious(0) possibly_damaging(0.878) TCGA-19-2620-01 14 64686074 64686074 G A SYNE2 Missense_Mutation p.M6602I 0.37 benign(0.038) TCGA-19-2620-01 14 75078500 75078500 C T LTBP2 Missense_Mutation p.A50T 0.53 tolerated(0.24) benign(0.273) TCGA-19-2620-01 14 96875256 96875256 C T AK7 Missense_Mutation p.A159V 0.06 deleterious(0) possibly_damaging(0.734) TCGA-19-2620-01 16 20328646 20328646 G T GP2 Silent p.S438S 0.30 TCGA-19-2620-01 16 21053361 21053361 G A DNAH3 Silent p.P1542P 0.33 TCGA-19-2620-01 16 49671646 49671646 G C ZNF423 Missense_Mutation p.Q473E 0.04 tolerated(0.78) benign(0.039) TCGA-19-2620-01 16 745854 745854 C T FBXL16 Missense_Mutation p.G235R 0.07 deleterious(0.04) probably_damaging(1) TCGA-19-2620-01 16 839297 839297 C G CHTF18 Missense_Mutation p.S125C 0.27 deleterious(0.04) possibly_damaging(0.789) TCGA-19-2620-01 17 2995386 2995386 C A OR1D2 Missense_Mutation p.R302I 0.04 deleterious(0) benign(0.418) TCGA-19-2620-01 17 44949992 44949992 C T WNT9B Missense_Mutation p.R63W 0.30 deleterious(0) benign(0.011) TCGA-19-2620-01 17 47118832 47118832 A C IGF2BP1 Missense_Mutation p.Q304P 0.29 deleterious(0.05) possibly_damaging(0.906) TCGA-19-2620-01 17 71418469 71418469 C T SDK2 Missense_Mutation p.V668I 0.34 deleterious(0.01) possibly_damaging(0.529) TCGA-19-2620-01 18 21043044 21043044 G A RIOK3 Splice_Site p.X60_splice 0.36 TCGA-19-2620-01 18 6999962 6999962 C T LAMA1 Missense_Mutation p.D1473N 0.25 deleterious(0.03) benign(0.365) TCGA-19-2620-01 19 11353971 11353971 C T DOCK6 Missense_Mutation p.R450H 0.38 deleterious(0.02) benign(0.158) TCGA-19-2620-01 19 14952342 14952342 G A OR7A10 Silent p.T116T 0.25 TCGA-19-2620-01 19 23159240 23159240 G A ZNF728 Missense_Mutation p.T300I 0.23 deleterious(0.04) benign(0.055) TCGA-19-2620-01 19 40364217 40364217 G A FCGBP Missense_Mutation p.P4809S 0.19 probably_damaging(0.997) TCGA-19-2620-01 19 46112931 46112931 C T EML2 Missense_Mutation p.R848Q 0.28 tolerated(0.06) benign(0.301) TCGA-19-2620-01 19 48525436 48525436 C T ELSPBP1 Missense_Mutation p.A175V 0.05 tolerated(0.24) benign(0.165) TCGA-19-2620-01 1 110086040 110086040 G A GPR61 Silent p.S132S 0.31 TCGA-19-2620-01 1 11562051 11562051 G A PTCHD2 Silent p.S334S 0.56 TCGA-19-2620-01 1 117618058 117618058 G A TTF2 Silent p.E284E 0.26 TCGA-19-2620-01 1 152283519 152283519 G A FLG Silent p.D1281D 0.35 TCGA-19-2620-01 1 186050515 186050515 C T HMCN1 Nonsense_Mutation p.R2926* 0.34 TCGA-19-2620-01 1 186083185 186083185 G A HMCN1 Missense_Mutation p.A3736T 0.26 benign(0.101) TCGA-19-2620-01 1 205280831 205280831 A G NUAK2 Splice_Site p.X118_splice 0.05 TCGA-19-2620-01 1 209954760 209954760 A T TRAF3IP3 Missense_Mutation p.H507L 0.14 deleterious(0.03) benign(0.004) TCGA-19-2620-01 1 90048973 90048973 A G LRRC8B Missense_Mutation p.Y255C 0.38 deleterious(0) probably_damaging(0.994) TCGA-19-2620-01 20 58489299 58489299 G T SYCP2 Missense_Mutation p.D214E 0.33 tolerated(0.08) benign(0.261) TCGA-19-2620-01 20 61907550 61907550 C A ARFGAP1 Silent p.L56L 0.40 TCGA-19-2620-01 22 32753902 32753902 C T RFPL3 5'UTR 0.30 TCGA-19-2620-01 2 102959595 102959595 T C IL1RL1 Missense_Mutation p.F261S 0.36 tolerated(0.09) benign(0.158) TCGA-19-2620-01 2 11943091 11943091 G A LPIN1 Missense_Mutation p.A698T 0.26 tolerated(0.59) benign(0.003) TCGA-19-2620-01 2 170066149 170066149 G A LRP2 Nonsense_Mutation p.R2095* 0.39 TCGA-19-2620-01 2 188343493 188343493 C T TFPI Intron 0.36 TCGA-19-2620-01 2 196765215 196765215 G C DNAH7 Missense_Mutation p.L1447V 0.20 deleterious(0) probably_damaging(1) TCGA-19-2620-01 2 201478598 201478598 C T AOX1 Missense_Mutation p.A507V 0.11 tolerated(0.08) probably_damaging(0.966) TCGA-19-2620-01 2 201881771 201881771 G A FAM126B Silent p.S92S 0.05 TCGA-19-2620-01 2 234835206 234835206 C A TRPM8 Silent p.L8L 0.06 TCGA-19-2620-01 3 10140652 10140652 T C FANCD2 3'UTR 0.32 TCGA-19-2620-01 3 133692615 133692615 G A SLCO2A1 Missense_Mutation p.R97C 0.30 deleterious(0) probably_damaging(1) TCGA-19-2620-01 3 142735741 142735741 C T U2SURP Missense_Mutation p.A165V 0.11 tolerated(0.58) benign(0.007) TCGA-19-2620-01 3 15093843 15093843 G C MRPS25 3'UTR 0.35 TCGA-19-2620-01 3 165548715 165548715 G T BCHE Missense_Mutation p.T36K 0.34 deleterious(0) probably_damaging(0.989) TCGA-19-2620-01 3 172165593 172165593 G A GHSR Missense_Mutation p.A204V 0.32 tolerated(0.06) probably_damaging(0.987) TCGA-19-2620-01 3 178960559 178960559 T - KCNMB3 3'UTR 0.15 TCGA-19-2620-01 3 49896651 49896651 C T CAMKV 3'UTR 0.32 TCGA-19-2620-01 3 97851601 97851601 A G OR5H1 Silent p.Q20Q 0.25 TCGA-19-2620-01 3 98001924 98001924 T A OR5H2 Missense_Mutation p.Y65N 0.31 deleterious(0) probably_damaging(1) TCGA-19-2620-01 3 98002428 98002428 A C OR5H2 Missense_Mutation p.K233Q 0.30 tolerated(0.12) benign(0.056) TCGA-19-2620-01 4 138451923 138451923 C T PCDH18 Silent p.R440R 0.29 TCGA-19-2620-01 4 77288530 77288530 G A CCDC158 Nonsense_Mutation p.R583* 0.29 TCGA-19-2620-01 4 83799939 83799939 C T SEC31A Missense_Mutation p.A116T 0.13 tolerated(0.14) benign(0.17) TCGA-19-2620-01 5 139889605 139889605 G A ANKHD1 Missense_Mutation p.G1315R 0.24 probably_damaging(0.988) TCGA-19-2620-01 5 140188686 140188686 C T PCDHA4 Silent p.D638D 0.23 TCGA-19-2620-01 5 140751537 140751537 C T PCDHGB3 Missense_Mutation p.R526C 0.33 deleterious(0.01) possibly_damaging(0.696) TCGA-19-2620-01 5 154188110 154188110 G A LARP1 Silent p.K853K 0.24 TCGA-19-2620-01 5 154188112 154188112 T A LARP1 Missense_Mutation p.M854K 0.24 deleterious(0) benign(0.409) TCGA-19-2620-01 5 161116737 161116737 G T GABRA6 Missense_Mutation p.D209Y 0.27 deleterious(0.03) probably_damaging(1) TCGA-19-2620-01 5 16668507 16668507 C T MYO10 Missense_Mutation p.R1985H 0.36 deleterious(0) probably_damaging(0.991) TCGA-19-2620-01 5 26885965 26885965 G A CDH9 Missense_Mutation p.A547V 0.30 deleterious(0.02) probably_damaging(0.996) TCGA-19-2620-01 6 119669897 119669897 C G MAN1A1 Missense_Mutation p.D112H 0.28 tolerated(0.11) benign(0.275) TCGA-19-2620-01 6 131929144 131929144 C - MED23 Frame_Shift_Del p.G382Efs*8 0.30 TCGA-19-2620-01 6 139183819 139183819 G A ECT2L Silent p.T418T 0.30 TCGA-19-2620-01 6 161470034 161470034 A G MAP3K4 Missense_Mutation p.R244G 0.29 tolerated(0.13) possibly_damaging(0.479) TCGA-19-2620-01 6 46135819 46135819 C T ENPP5 Missense_Mutation p.V61M 0.25 deleterious(0) probably_damaging(0.978) TCGA-19-2620-01 6 63991054 63991054 T A LGSN Missense_Mutation p.E134D 0.30 tolerated(0.13) benign(0.225) TCGA-19-2620-01 6 93956625 93956625 C G EPHA7 Missense_Mutation p.D871H 0.29 tolerated(0.13) possibly_damaging(0.889) TCGA-19-2620-01 7 148963666 148963666 G - ZNF783 Frame_Shift_Del p.N90Tfs*54 0.25 TCGA-19-2620-01 7 44579249 44579249 G A NPC1L1 Silent p.D249D 0.33 TCGA-19-2620-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.12 deleterious(0) possibly_damaging(0.75) TCGA-19-2620-01 7 81598223 81598223 C T CACNA2D1 Missense_Mutation p.G792E 0.22 tolerated(0.25) benign(0.004) TCGA-19-2620-01 8 124453566 124453566 G A WDYHV1 Missense_Mutation p.D177N 0.35 deleterious(0.03) benign(0.059) TCGA-19-2620-01 8 142228261 142228261 G A SLC45A4 Missense_Mutation p.T442M 0.20 deleterious(0) probably_damaging(0.987) TCGA-19-2620-01 8 144462083 144462083 G A RHPN1 Missense_Mutation p.V344M 0.50 deleterious(0.02) probably_damaging(0.971) TCGA-19-2620-01 8 82644913 82644913 G A CHMP4C Missense_Mutation p.A18T 0.56 tolerated(0.29) benign(0.094) TCGA-19-2620-01 9 112899196 112899196 C T PALM2-AKAP2 Missense_Mutation p.R458C 0.34 deleterious(0) probably_damaging(0.979) TCGA-19-2620-01 9 139306464 139306464 G A PMPCA Silent p.A29A 0.06 TCGA-19-2620-01 9 32633610 32633610 T A TAF1L Missense_Mutation p.Q656H 0.09 tolerated(0.54) benign(0.007) TCGA-19-2620-01 X 117043736 117043736 C T KLHL13 Silent p.T301T 0.17 TCGA-19-2623-01 11 119535607 119535607 G C PVRL1 Nonsense_Mutation p.Y468* 0.33 TCGA-19-2623-01 11 55406513 55406513 C T OR4P4 Missense_Mutation p.S227F 0.61 deleterious(0) possibly_damaging(0.907) TCGA-19-2623-01 11 55606713 55606713 G A OR5D16 Silent p.A162A 0.50 TCGA-19-2623-01 12 107033171 107033172 - T RFX4 Splice_Site p.X73_splice 0.19 TCGA-19-2623-01 12 21681996 21681996 G A C12orf39 Silent p.A90A 0.64 TCGA-19-2623-01 12 46321868 46321868 G C SCAF11 Missense_Mutation p.T539R 0.62 tolerated(0.09) benign(0.027) TCGA-19-2623-01 12 49919998 49919998 G A SPATS2 Missense_Mutation p.R533H 0.60 deleterious(0.02) probably_damaging(0.999) TCGA-19-2623-01 12 86373320 86373324 TTTAC - MGAT4C Frame_Shift_Del p.V394Yfs*9 0.54 TCGA-19-2623-01 13 28592630 28592630 C G FLT3 Missense_Mutation p.D839H 0.34 deleterious(0) probably_damaging(1) TCGA-19-2623-01 13 48955560 48955563 AATC - RB1 Frame_Shift_Del p.E559Afs*51 0.62 TCGA-19-2623-01 14 105477700 105477700 G A CDCA4 Silent p.Y189Y 0.64 TCGA-19-2623-01 14 106207950 106207950 C T IGHG1 Missense_Mutation p.G285S 0.55 tolerated(0.13) possibly_damaging(0.907) TCGA-19-2623-01 14 58737688 58737688 T C PSMA3 Missense_Mutation p.I232T 0.59 deleterious(0.02) benign(0.082) TCGA-19-2623-01 15 33358855 33358855 G A FMN1 Missense_Mutation p.R411W 0.27 deleterious(0.01) unknown(0) TCGA-19-2623-01 15 40093624 40093624 C T GPR176 Silent p.A419A 0.36 TCGA-19-2623-01 15 42364007 42364007 C A PLA2G4D Missense_Mutation p.R513M 0.33 deleterious(0) probably_damaging(0.944) TCGA-19-2623-01 15 45724277 45724277 C T C15orf48 Nonsense_Mutation p.R44* 0.29 TCGA-19-2623-01 15 70970467 70970467 C T UACA Missense_Mutation p.V324I 0.19 tolerated(0.34) benign(0.021) TCGA-19-2623-01 16 15857677 15857677 G A MYH11 Nonsense_Mutation p.Q376* 0.31 TCGA-19-2623-01 16 21145656 21145656 C T DNAH3 Missense_Mutation p.A336T 0.32 tolerated(0.1) benign(0.017) TCGA-19-2623-01 16 31426282 31426282 C T ITGAD Silent p.A751A 0.35 TCGA-19-2623-01 16 50815179 50815179 C T CYLD Missense_Mutation p.T514M 0.31 deleterious(0) probably_damaging(1) TCGA-19-2623-01 16 84203580 84203580 C A DNAAF1 Missense_Mutation p.S382R 0.18 deleterious(0) possibly_damaging(0.898) TCGA-19-2623-01 17 10297588 10297588 C T MYH8 Missense_Mutation p.R1715H 0.65 deleterious(0) benign(0.262) TCGA-19-2623-01 17 32685057 32685057 A C CCL13 Missense_Mutation p.K68N 0.22 deleterious(0.01) probably_damaging(0.935) TCGA-19-2623-01 17 38911514 38911514 G A KRT25 Nonsense_Mutation p.R4* 0.08 TCGA-19-2623-01 17 41601142 41601142 G A DHX8 Missense_Mutation p.R1197H 0.68 deleterious(0) possibly_damaging(0.886) TCGA-19-2623-01 17 4391226 4391226 C T SPNS3 3'UTR 0.35 TCGA-19-2623-01 17 45822386 45822386 G A TBX21 Missense_Mutation p.R421Q 0.62 tolerated(0.59) possibly_damaging(0.652) TCGA-19-2623-01 17 5463322 5463322 G A NLRP1 Missense_Mutation p.P232S 0.56 tolerated(0.48) benign(0.001) TCGA-19-2623-01 17 7577548 7577548 C T TP53 Missense_Mutation p.G245S 0.57 deleterious(0) probably_damaging(1) TCGA-19-2623-01 18 43668121 43668121 T C ATP5A1 Silent p.Q251Q 0.42 TCGA-19-2623-01 19 14910414 14910414 A - OR7C1 Frame_Shift_Del p.C179Vfs*7 0.29 TCGA-19-2623-01 19 18976409 18976409 G A UPF1 Missense_Mutation p.R1020H 0.34 tolerated(0.38) benign(0.352) TCGA-19-2623-01 19 43257477 43257477 A C PSG8 3'Flank 0.30 TCGA-19-2623-01 19 55501996 55501996 G C NLRP2 Silent p.L888L 0.32 TCGA-19-2623-01 19 56539073 56539073 G A NLRP5 Missense_Mutation p.A492T 0.45 tolerated(0.43) benign(0.008) TCGA-19-2623-01 19 7117197 7117197 G A INSR Missense_Mutation p.A1340V 0.22 tolerated(0.25) benign(0.001) TCGA-19-2623-01 19 8160957 8160957 G A FBN3 Silent p.D1849D 0.30 TCGA-19-2623-01 1 116670945 116670945 G A MAB21L3 Silent p.T280T 0.38 TCGA-19-2623-01 1 144823890 144823890 C G NBPF9 Nonsense_Mutation p.S385* 0.30 TCGA-19-2623-01 1 158746549 158746549 G A OR6N2 Missense_Mutation p.R293C 0.29 deleterious(0) benign(0.273) TCGA-19-2623-01 1 177927423 177927423 G A SEC16B Silent p.P403P 0.31 TCGA-19-2623-01 1 181702133 181702133 C A CACNA1E Missense_Mutation p.P971T 0.07 tolerated(0.17) possibly_damaging(0.641) TCGA-19-2623-01 1 196801227 196801227 G A CFHR1 3'UTR 0.36 TCGA-19-2623-01 1 19992747 19992747 C T HTR6 Silent p.H167H 0.31 TCGA-19-2623-01 1 217688167 217688167 T C GPATCH2 Missense_Mutation p.H388R 0.40 tolerated(0.71) benign(0.218) TCGA-19-2623-01 1 224514105 224514105 T C NVL Missense_Mutation p.Q40R 0.38 deleterious(0) possibly_damaging(0.905) TCGA-19-2623-01 1 40770007 40770007 G A COL9A2 Silent p.G424G 0.58 TCGA-19-2623-01 1 70504762 70504762 G C LRRC7 Missense_Mutation p.R1047S 0.44 tolerated(0.1) probably_damaging(0.989) TCGA-19-2623-01 1 8419927 8419927 C T RERE Missense_Mutation p.R1172H 0.14 unknown(0) TCGA-19-2623-01 1 89650937 89650937 T A GBP4 Nonstop_Mutation p.*641Yext*7 0.07 TCGA-19-2623-01 20 2843940 2843940 G A VPS16 Missense_Mutation p.V458M 0.07 deleterious(0) probably_damaging(0.982) TCGA-19-2623-01 20 4162543 4162543 C T SMOX Missense_Mutation p.R177C 0.36 tolerated(0.09) probably_damaging(0.984) TCGA-19-2623-01 20 57767832 57767832 C T ZNF831 Silent p.D586D 0.24 TCGA-19-2623-01 21 15889263 15889263 T C SAMSN1 Missense_Mutation p.M145V 0.10 deleterious(0) possibly_damaging(0.73) TCGA-19-2623-01 2 152470900 152470900 G A NEB Nonsense_Mutation p.Q3831* 0.13 TCGA-19-2623-01 2 185801478 185801478 C G ZNF804A Nonsense_Mutation p.S452* 0.36 TCGA-19-2623-01 2 189864035 189864035 C A COL3A1 Missense_Mutation p.R683S 0.12 unknown(0) TCGA-19-2623-01 2 190571779 190571779 A C ANKAR Missense_Mutation p.I676L 0.39 deleterious(0.01) possibly_damaging(0.669) TCGA-19-2623-01 2 219507508 219507508 C T ZNF142 Missense_Mutation p.R1244H 0.35 deleterious(0) possibly_damaging(0.812) TCGA-19-2623-01 2 226447451 226447451 G A NYAP2 Missense_Mutation p.V440I 0.28 tolerated(0.08) probably_damaging(0.996) TCGA-19-2623-01 2 234891861 234891861 C T TRPM8 Silent p.D918D 0.23 TCGA-19-2623-01 2 71909724 71909724 C T DYSF Missense_Mutation p.R2080W 0.34 deleterious(0) probably_damaging(0.999) TCGA-19-2623-01 2 96798441 96798441 G A ASTL Missense_Mutation p.R159C 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-19-2623-01 3 12858462 12858462 C T CAND2 Silent p.D677D 0.45 TCGA-19-2623-01 3 142557612 142557612 G A PCOLCE2 Missense_Mutation p.A237V 0.39 tolerated(0.13) benign(0.052) TCGA-19-2623-01 3 38748876 38748876 T C SCN10A Splice_Site p.X1428_splice 0.38 TCGA-19-2623-01 4 25014103 25014103 G T LGI2 Missense_Mutation p.T225N 0.33 deleterious(0.03) benign(0.131) TCGA-19-2623-01 4 46043100 46043100 G A GABRG1 Missense_Mutation p.R435C 0.43 deleterious(0.03) possibly_damaging(0.84) TCGA-19-2623-01 4 70361563 70361563 G A UGT2B4 Missense_Mutation p.T6I 0.31 tolerated(1) benign(0.001) TCGA-19-2623-01 4 74847163 74847163 G A PF4 Silent p.A63A 0.23 TCGA-19-2623-01 4 8582980 8582980 T C GPR78 Missense_Mutation p.S91P 0.10 tolerated(0.05) probably_damaging(0.968) TCGA-19-2623-01 4 89668975 89668975 T C FAM13A Missense_Mutation p.D730G 0.20 deleterious(0) possibly_damaging(0.78) TCGA-19-2623-01 5 1253833 1253833 C T TERT 3'UTR 0.47 TCGA-19-2623-01 5 136476318 136476318 G A SPOCK1 Nonsense_Mutation p.Q100* 0.28 TCGA-19-2623-01 5 19747074 19747074 G A CDH18 Missense_Mutation p.T167I 0.27 deleterious(0.03) benign(0.293) TCGA-19-2623-01 5 41012778 41012778 G A MROH2B Silent p.D1014D 0.42 TCGA-19-2623-01 5 94834176 94834176 T A TTC37 Missense_Mutation p.H1154L 0.20 tolerated(0.3) benign(0) TCGA-19-2623-01 6 109477094 109477094 A T CEP57L1 Intron 0.22 TCGA-19-2623-01 6 160679391 160679391 C T SLC22A2 Silent p.S133S 0.48 TCGA-19-2623-01 6 30876944 30876944 T G GTF2H4 Missense_Mutation p.V44G 0.37 deleterious(0.01) probably_damaging(0.949) TCGA-19-2623-01 6 44268962 44268962 G C AARS2 Silent p.P908P 0.28 TCGA-19-2623-01 7 137363356 137363356 C T DGKI Missense_Mutation p.V185I 0.24 deleterious(0.05) benign(0.012) TCGA-19-2623-01 7 154863096 154863096 G A HTR5A Missense_Mutation p.A163T 0.09 tolerated(0.16) benign(0.04) TCGA-19-2623-01 7 155251752 155251752 C T EN2 Missense_Mutation p.S227F 0.20 deleterious(0) probably_damaging(0.993) TCGA-19-2623-01 7 156521400 156521400 C G LMBR1 Missense_Mutation p.A285P 0.05 deleterious(0) probably_damaging(0.987) TCGA-19-2623-01 7 2269722 2269722 G A MAD1L1 Missense_Mutation p.S16F 0.24 deleterious(0) probably_damaging(0.991) TCGA-19-2623-01 7 4009042 4009042 C T SDK1 Missense_Mutation p.T567M 0.23 tolerated(0.24) benign(0.028) TCGA-19-2623-01 7 53103741 53103741 G A POM121L12 Missense_Mutation p.R126H 0.21 tolerated(0.12) probably_damaging(0.923) TCGA-19-2623-01 8 120118082 120118082 C T COLEC10 Silent p.I162I 0.32 TCGA-19-2623-01 8 143956451 143956451 G A CYP11B1 Silent p.H440H 0.36 TCGA-19-2623-01 8 15508246 15508246 C T TUSC3 Missense_Mutation p.R117C 0.38 deleterious(0) probably_damaging(0.973) TCGA-19-2623-01 8 16021625 16021625 G C MSR1 Missense_Mutation p.L256V 0.32 deleterious(0) probably_damaging(0.998) TCGA-19-2623-01 8 30916010 30916010 C A WRN Missense_Mutation p.P16H 0.12 deleterious(0) probably_damaging(1) TCGA-19-2623-01 8 49643175 49643175 A G EFCAB1 Silent p.D81D 0.44 TCGA-19-2623-01 9 111658909 111658909 T A IKBKAP Missense_Mutation p.D868V 0.16 tolerated(0.35) benign(0.002) TCGA-19-2623-01 9 131371470 131371470 G C SPTAN1 Missense_Mutation p.Q1555H 0.38 deleterious(0) unknown(0) TCGA-19-2623-01 9 32633905 32633905 C A TAF1L Missense_Mutation p.R558L 0.28 deleterious(0) benign(0.012) TCGA-19-2623-01 9 71861483 71861483 C A TJP2 Intron 0.22 TCGA-19-2623-01 9 73167906 73167906 C T TRPM3 Missense_Mutation p.R1131K 0.15 deleterious(0) probably_damaging(0.99) TCGA-19-2623-01 9 79999639 79999639 A G VPS13A Intron 0.50 TCGA-19-2623-01 X 24580418 24580418 C G PCYT1B Missense_Mutation p.E368Q 0.55 deleterious_low_confidence(0.01) possibly_damaging(0.727) TCGA-19-2623-01 X 32563337 32563337 G T DMD Missense_Mutation p.L703I 0.69 benign(0.047) TCGA-19-2623-01 X 35989828 35989828 C T CXorf22 Missense_Mutation p.A699V 0.79 tolerated(0.23) benign(0.027) TCGA-19-2624-01 10 135084467 135084467 G A ADAM8 Silent p.N494N 0.39 TCGA-19-2624-01 10 97396856 97396856 A T ALDH18A1 Silent p.A184A 0.72 TCGA-19-2624-01 11 104897525 104897525 C T CASP1 Intron 0.43 TCGA-19-2624-01 11 130069857 130069857 C T ST14 Missense_Mutation p.R607W 0.15 deleterious(0) probably_damaging(0.949) TCGA-19-2624-01 11 4703127 4703127 C T OR51E2 Missense_Mutation p.R272H 0.14 tolerated(1) benign(0.001) TCGA-19-2624-01 11 55063093 55063093 T A TRIM51HP RNA 0.28 TCGA-19-2624-01 11 55861299 55861299 C A OR8I2 Missense_Mutation p.S172R 0.42 deleterious(0.01) benign(0.01) TCGA-19-2624-01 11 558885 558885 G A C11orf35 Silent p.P43P 0.34 TCGA-19-2624-01 11 5776764 5776764 G A OR52N4 Missense_Mutation p.R265H 0.42 deleterious(0.05) benign(0.104) TCGA-19-2624-01 11 67177159 67177159 C - TBC1D10C Frame_Shift_Del p.I428Sfs*126 0.49 TCGA-19-2624-01 12 111895056 111895056 G A ATXN2 Nonsense_Mutation p.Q1160* 0.50 TCGA-19-2624-01 12 130648665 130648665 C T FZD10 Missense_Mutation p.A393V 0.38 deleterious(0.04) probably_damaging(0.998) TCGA-19-2624-01 12 53662942 53662942 G A ESPL1 Silent p.G72G 0.36 TCGA-19-2624-01 12 8201337 8201337 A G FOXJ2 Missense_Mutation p.S424G 0.41 deleterious(0) probably_damaging(0.958) TCGA-19-2624-01 12 97345747 97345747 G A NEDD1 Silent p.L640L 0.52 TCGA-19-2624-01 14 100166408 100166408 G A CYP46A1 Missense_Mutation p.R138Q 0.31 deleterious(0) probably_damaging(0.999) TCGA-19-2624-01 14 105410901 105410901 C A AHNAK2 Missense_Mutation p.K3629N 0.07 possibly_damaging(0.607) TCGA-19-2624-01 14 105418389 105418389 G A AHNAK2 Silent p.V1133V 0.45 TCGA-19-2624-01 15 22332433 22332433 G A RP11-69H14.6 RNA 0.12 TCGA-19-2624-01 16 88945788 88945788 C T CBFA2T3 Missense_Mutation p.E518K 0.14 deleterious(0) possibly_damaging(0.781) TCGA-19-2624-01 17 36499303 36499303 C G GPR179 Missense_Mutation p.E124Q 0.43 deleterious(0.01) benign(0.354) TCGA-19-2624-01 18 20889650 20889650 G A TMEM241 Missense_Mutation p.T275M 0.34 tolerated(0.11) benign(0.002) TCGA-19-2624-01 19 18507099 18507099 G A LRRC25 Silent p.S225S 0.42 TCGA-19-2624-01 19 307371 307371 T C MIER2 Missense_Mutation p.Y455C 0.14 tolerated(0.06) benign(0.005) TCGA-19-2624-01 19 39913972 39913972 G A PLEKHG2 Missense_Mutation p.A760T 0.45 deleterious_low_confidence(0.01) benign(0.101) TCGA-19-2624-01 19 4409704 4409704 C A CHAF1A Missense_Mutation p.P303Q 0.04 tolerated(0.52) unknown(0) TCGA-19-2624-01 1 115272925 115272925 G C CSDE1 Missense_Mutation p.T483S 0.43 tolerated(0.93) benign(0.005) TCGA-19-2624-01 1 160970003 160970003 G A F11R Missense_Mutation p.T175M 0.50 tolerated(0.12) benign(0.034) TCGA-19-2624-01 1 203818961 203818961 G A ZC3H11A Silent p.R582R 0.50 TCGA-19-2624-01 1 243362438 243362438 A G CEP170 Silent p.D185D 0.08 TCGA-19-2624-01 1 2461382 2461382 C G HES5 Silent p.L41L 0.12 TCGA-19-2624-01 1 62728946 62728946 C T KANK4 Missense_Mutation p.R786H 0.07 deleterious(0.02) benign(0.046) TCGA-19-2624-01 20 2320632 2320632 G A TGM3 Missense_Mutation p.D645N 0.44 tolerated(0.58) benign(0.069) TCGA-19-2624-01 20 43836470 43836470 G A SEMG1 Missense_Mutation p.V178I 0.49 tolerated(0.41) benign(0.343) TCGA-19-2624-01 21 15918600 15918600 C A SAMSN1 Intron 0.52 TCGA-19-2624-01 21 31986055 31986055 A T KRTAP6-1 Missense_Mutation p.C57S 0.20 unknown(0) TCGA-19-2624-01 22 36689392 36689392 C T MYH9 Missense_Mutation p.A1360T 0.48 benign(0.001) TCGA-19-2624-01 2 179442793 179442793 G A TTN Nonsense_Mutation p.R22817* 0.05 TCGA-19-2624-01 2 201371625 201371625 C A KCTD18 Missense_Mutation p.A39S 0.36 tolerated(0.11) possibly_damaging(0.462) TCGA-19-2624-01 2 205986432 205986432 T C PARD3B Silent p.G308G 0.42 TCGA-19-2624-01 2 233244353 233244353 G A ALPP Missense_Mutation p.R147H 0.28 tolerated(0.56) benign(0.005) TCGA-19-2624-01 5 151784217 151784217 C T NMUR2 Missense_Mutation p.R153H 0.45 tolerated(0.09) probably_damaging(0.953) TCGA-19-2624-01 5 161578743 161578743 G A GABRG2 Missense_Mutation p.R419Q 0.38 tolerated(0.12) benign(0.05) TCGA-19-2624-01 5 41313846 41313846 A T PLCXD3 Missense_Mutation p.V280D 0.49 deleterious(0) possibly_damaging(0.62) TCGA-19-2624-01 6 109993332 109993332 C T AK9 Missense_Mutation p.E74K 0.40 tolerated(0.24) benign(0.073) TCGA-19-2624-01 6 133005540 133005540 G A VNN1 Silent p.F431F 0.47 TCGA-19-2624-01 6 136693640 136693640 G T MAP7 Missense_Mutation p.A314E 0.05 tolerated(0.67) possibly_damaging(0.81) TCGA-19-2624-01 6 2623743 2623743 G C C6orf195 Missense_Mutation p.A105G 0.57 tolerated_low_confidence(0.06) possibly_damaging(0.567) TCGA-19-2624-01 6 39267179 39267179 C T KCNK17 3'UTR 0.49 TCGA-19-2624-01 7 104377161 104377161 G C LHFPL3 Missense_Mutation p.G162A 0.22 deleterious(0.01) possibly_damaging(0.793) TCGA-19-2624-01 7 55210077 55210077 G A EGFR Missense_Mutation p.G63R 0.04 deleterious(0) probably_damaging(0.998) TCGA-19-2624-01 7 55210078 55210078 G A EGFR Missense_Mutation p.G63E 0.04 tolerated(0.28) probably_damaging(0.994) TCGA-19-2624-01 7 5959509 5959509 C T CCZ1 Nonsense_Mutation p.R340* 0.18 TCGA-19-2624-01 7 63538750 63538750 T C ZNF727 Silent p.N441N 0.35 TCGA-19-2624-01 7 89794038 89794038 C A STEAP1 Missense_Mutation p.S337Y 0.20 deleterious_low_confidence(0.03) benign(0.003) TCGA-19-2624-01 X 26157310 26157310 A G MAGEB18 Missense_Mutation p.T70A 0.84 tolerated(0.11) benign(0.074) TCGA-19-2625-01 10 28229643 28229643 G T ARMC4 Missense_Mutation p.A612E 0.35 deleterious(0) probably_damaging(0.994) TCGA-19-2625-01 10 89685314 89685314 T A PTEN Missense_Mutation p.L70H 0.32 deleterious(0) probably_damaging(1) TCGA-19-2625-01 11 118184559 118184559 C T CD3E Nonsense_Mutation p.R164* 0.24 TCGA-19-2625-01 11 618758 618758 T C CDHR5 Missense_Mutation p.T601A 0.29 tolerated(0.13) possibly_damaging(0.53) TCGA-19-2625-01 12 132471269 132471269 C A EP400 Missense_Mutation p.P714T 0.17 unknown(0) TCGA-19-2625-01 12 22065805 22065805 C - ABCC9 Splice_Site p.X337_splice 0.19 TCGA-19-2625-01 12 49361974 49361974 G T WNT10B Silent p.R156R 0.23 TCGA-19-2625-01 13 48919325 48919332 AAATTGGA - RB1 Frame_Shift_Del p.L165Dfs*3 0.14 TCGA-19-2625-01 14 75149998 75149998 C T AREL1 Splice_Site p.X161_splice 0.46 TCGA-19-2625-01 16 66426078 66426078 G A CDH5 Missense_Mutation p.V337I 0.28 tolerated(0.96) benign(0.025) TCGA-19-2625-01 16 75669879 75669879 C T KARS Silent p.P228P 0.22 TCGA-19-2625-01 17 10432765 10432765 G A MYH2 Missense_Mutation p.R1051C 0.32 deleterious(0.03) benign(0.032) TCGA-19-2625-01 17 3030338 3030338 C T OR1G1 Missense_Mutation p.A170T 0.24 tolerated(0.7) possibly_damaging(0.654) TCGA-19-2625-01 17 38245675 38245675 T G THRA Intron 0.29 TCGA-19-2625-01 17 7577568 7577568 C T TP53 Missense_Mutation p.C238Y 0.27 deleterious(0) probably_damaging(1) TCGA-19-2625-01 17 7578235 7578235 T C TP53 Missense_Mutation p.Y205C 0.29 deleterious(0) probably_damaging(0.99) TCGA-19-2625-01 19 11224247 11224247 T C LDLR Silent p.Y465Y 0.29 TCGA-19-2625-01 19 54621969 54621969 T C PRPF31 Missense_Mutation p.M65T 0.31 tolerated(0.63) benign(0) TCGA-19-2625-01 19 846282 846282 G A PRTN3 Missense_Mutation p.V169I 0.31 tolerated(0.25) benign(0.037) TCGA-19-2625-01 19 9068025 9068025 T C MUC16 Missense_Mutation p.H6474R 0.14 unknown(0) TCGA-19-2625-01 1 160465979 160465979 C T SLAMF6 Missense_Mutation p.R85Q 0.46 tolerated(0.15) possibly_damaging(0.869) TCGA-19-2625-01 1 178514674 178514674 G A C1ORF220 Silent p.R20R 0.64 TCGA-19-2625-01 1 179520378 179520378 A G NPHS2 Missense_Mutation p.L361P 0.23 tolerated(0.18) benign(0.193) TCGA-19-2625-01 1 18149715 18149715 G A ACTL8 Missense_Mutation p.R71H 0.29 deleterious(0.04) benign(0.148) TCGA-19-2625-01 1 214816089 214816089 G A CENPF Missense_Mutation p.E1470K 0.44 possibly_damaging(0.54) TCGA-19-2625-01 1 220154727 220154727 T C EPRS Missense_Mutation p.N1149S 0.46 tolerated(0.27) benign(0.321) TCGA-19-2625-01 1 32280067 32280067 C T SPOCD1 Missense_Mutation p.A290T 0.15 tolerated(1) benign(0.001) TCGA-19-2625-01 1 44056912 44056912 C T PTPRF Missense_Mutation p.R407C 0.19 deleterious(0.03) benign(0.028) TCGA-19-2625-01 1 86951220 86951220 C - CLCA1 Frame_Shift_Del p.D312Tfs*15 0.19 TCGA-19-2625-01 20 17950509 17950509 A G MGME1 Missense_Mutation p.M3V 0.28 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-19-2625-01 20 44184401 44184401 G A WFDC8 Silent p.C128C 0.26 TCGA-19-2625-01 20 54824279 54824279 C T MC3R Missense_Mutation p.S127F 0.31 deleterious(0) probably_damaging(1) TCGA-19-2625-01 21 31654689 31654689 C T KRTAP24-1 Missense_Mutation p.V188I 0.24 deleterious(0.05) benign(0.006) TCGA-19-2625-01 21 47546138 47546138 C T COL6A2 Silent p.D803D 0.33 TCGA-19-2625-01 22 32017352 32017352 C T PISD Missense_Mutation p.R188H 0.39 tolerated(0.3) benign(0.003) TCGA-19-2625-01 2 135745654 135745654 T G MAP3K19 Missense_Mutation p.E263A 0.19 tolerated(0.1) benign(0) TCGA-19-2625-01 2 143913090 143913090 G A ARHGAP15 Missense_Mutation p.V11M 0.19 tolerated(0.16) benign(0.001) TCGA-19-2625-01 2 167262458 167262458 C A SCN7A Missense_Mutation p.A1561S 0.24 tolerated(0.4) benign(0.245) TCGA-19-2625-01 2 234106832 234106832 G A INPP5D Missense_Mutation p.V917M 0.08 tolerated(0.22) benign(0.01) TCGA-19-2625-01 2 234669017 234669017 G A UGT1A8 Intron 0.22 TCGA-19-2625-01 2 242105797 242105797 C G PPP1R7 Missense_Mutation p.L254V 0.33 deleterious(0) probably_damaging(1) TCGA-19-2625-01 2 70742029 70742029 G A TGFA Missense_Mutation p.A19V 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-19-2625-01 2 88472749 88472749 G A THNSL2 Missense_Mutation p.G27E 0.19 deleterious(0) probably_damaging(0.978) TCGA-19-2625-01 2 89416943 89416943 G A IGKV1-17 Missense_Mutation p.P81S 0.11 deleterious(0.03) possibly_damaging(0.81) TCGA-19-2625-01 2 90122023 90122023 C T IGKV1D-17 Missense_Mutation p.P81S 0.08 deleterious(0.03) possibly_damaging(0.57) TCGA-19-2625-01 3 120973739 120973739 T C STXBP5L Intron 0.46 TCGA-19-2625-01 3 12856870 12856870 T A CAND2 Missense_Mutation p.W413R 0.33 tolerated(0.54) probably_damaging(0.999) TCGA-19-2625-01 3 138664545 138664545 C A FOXL2 Silent p.A340A 0.06 TCGA-19-2625-01 3 50403130 50403130 C G CACNA2D2 Intron 0.14 TCGA-19-2625-01 3 66455660 66455660 C T LRIG1 Silent p.T374T 0.35 TCGA-19-2625-01 3 98251885 98251885 C G GPR15 Missense_Mutation p.H336Q 0.26 tolerated(0.19) possibly_damaging(0.546) TCGA-19-2625-01 3 9987821 9987821 G A PRRT3 3'UTR 0.25 TCGA-19-2625-01 4 167655919 167655919 T C SPOCK3 3'UTR 0.44 TCGA-19-2625-01 4 183710311 183710311 C T TENM3 Silent p.D1790D 0.32 TCGA-19-2625-01 5 1085433 1085433 C T SLC12A7 Silent p.A277A 0.30 TCGA-19-2625-01 5 137801566 137801568 TGC - EGR1 In_Frame_Del p.L41del 0.33 TCGA-19-2625-01 5 156566183 156566183 A G MED7 Missense_Mutation p.I87T 0.30 deleterious(0.01) benign(0.009) TCGA-19-2625-01 5 179260112 179260114 GAG - SQSTM1 In_Frame_Del p.E280del 0.28 TCGA-19-2625-01 5 45695958 45695958 C A HCN1 Missense_Mutation p.G80C 0.39 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-19-2625-01 5 78533329 78533329 T C JMY Missense_Mutation p.C286R 0.29 deleterious(0) probably_damaging(0.966) TCGA-19-2625-01 6 159210403 159210403 T C EZR Missense_Mutation p.I5V 0.22 tolerated(0.57) benign(0.001) TCGA-19-2625-01 6 168343837 168343837 A G MLLT4 Missense_Mutation p.Y1036C 0.31 deleterious(0) probably_damaging(1) TCGA-19-2625-01 6 44217828 44217828 G C HSP90AB1 Missense_Mutation p.E195D 0.29 deleterious(0.02) benign(0.014) TCGA-19-2625-01 6 52850376 52850376 G A GSTA4 Missense_Mutation p.H49Y 0.29 tolerated(1) benign(0.015) TCGA-19-2625-01 6 64416078 64416078 A T PHF3 Missense_Mutation p.Q1176L 0.30 tolerated(0.08) benign(0.354) TCGA-19-2625-01 8 25232155 25232155 C T DOCK5 Silent p.H1267H 0.28 TCGA-19-2625-01 9 101017509 101017509 G C TBC1D2 Missense_Mutation p.D105E 0.13 tolerated(1) benign(0.003) TCGA-19-2625-01 X 102003861 102003861 G A BHLHB9 5'UTR 0.43 TCGA-19-2625-01 X 138897124 138897124 T A ATP11C Missense_Mutation p.R116S 0.29 deleterious(0) probably_damaging(0.999) TCGA-19-2625-01 X 215977 215977 T C PLCXD1 Missense_Mutation p.L316P 0.27 deleterious(0) probably_damaging(1) TCGA-19-2625-01 X 6451740 6451740 C T VCX3A 3'UTR 0.11 TCGA-19-2625-01 X 79281244 79281244 C G TBX22 Missense_Mutation p.L201V 0.21 deleterious(0) probably_damaging(1) TCGA-19-2629-01 10 135351261 135351261 G C CYP2E1 Missense_Mutation p.V388L 0.31 deleterious(0.03) benign(0.017) TCGA-19-2629-01 10 64960280 64960282 TTC - JMJD1C In_Frame_Del p.E1744del 0.36 TCGA-19-2629-01 11 128840825 128840825 G C ARHGAP32 Missense_Mutation p.P1414R 0.13 deleterious_low_confidence(0) possibly_damaging(0.682) TCGA-19-2629-01 11 3687783 3687783 T C CHRNA10 Missense_Mutation p.M303V 0.16 tolerated(0.26) benign(0.065) TCGA-19-2629-01 11 45268002 45268002 C T SYT13 Missense_Mutation p.R303H 0.10 deleterious(0) probably_damaging(0.999) TCGA-19-2629-01 11 47446172 47446173 TT - PSMC3 Frame_Shift_Del p.K125Nfs*18 0.33 TCGA-19-2629-01 11 6261617 6261617 G A CNGA4 Missense_Mutation p.R198H 0.04 deleterious(0) benign(0.271) TCGA-19-2629-01 11 64374632 64374632 G A NRXN2 3'UTR 0.14 TCGA-19-2629-01 11 78440577 78440577 T C TENM4 Missense_Mutation p.I1084V 0.36 tolerated(0.37) benign(0.085) TCGA-19-2629-01 11 7950020 7950020 G A OR10A6 Silent p.L64L 0.05 TCGA-19-2629-01 11 85342819 85342819 T C TMEM126B Missense_Mutation p.I57T 0.05 deleterious(0) probably_damaging(0.932) TCGA-19-2629-01 11 89424051 89424054 AAAC - FOLH1B Intron 0.21 TCGA-19-2629-01 12 13208755 13208755 G A KIAA1467 Missense_Mutation p.R103H 0.11 deleterious(0) probably_damaging(0.999) TCGA-19-2629-01 12 14923761 14923761 A G HIST4H4 Silent p.D86D 0.12 TCGA-19-2629-01 12 46245922 46245923 AG - ARID2 Frame_Shift_Del p.N1340Lfs*12 0.28 TCGA-19-2629-01 13 39425866 39425866 A G FREM2 Silent p.E2262E 0.22 TCGA-19-2629-01 13 42877884 42877884 A G AKAP11 Missense_Mutation p.S1668G 0.12 tolerated(0.07) benign(0.008) TCGA-19-2629-01 13 49089796 49089796 G C RCBTB2 Missense_Mutation p.L42V 0.05 tolerated(0.42) benign(0.098) TCGA-19-2629-01 14 105409359 105409359 G A AHNAK2 Silent p.F4143F 0.29 TCGA-19-2629-01 14 21167918 21167918 C T RNASE4 Missense_Mutation p.R130C 0.19 tolerated(0.07) benign(0.145) TCGA-19-2629-01 14 24707579 24707581 GAA - GMPR2 In_Frame_Del p.K295del 0.26 TCGA-19-2629-01 14 36943037 36943040 TCTC - SFTA3 3'UTR 0.27 TCGA-19-2629-01 15 58256142 58256142 G A ALDH1A2 Missense_Mutation p.R343W 0.25 deleterious(0.01) probably_damaging(0.945) TCGA-19-2629-01 15 77059334 77059336 TTC - SCAPER In_Frame_Del p.E448del 0.38 TCGA-19-2629-01 16 56673190 56673190 T C MT1A Missense_Mutation p.C15R 0.09 deleterious(0.04) probably_damaging(0.989) TCGA-19-2629-01 16 56901059 56901059 C T SLC12A3 Silent p.G120G 0.22 TCGA-19-2629-01 16 58562381 58562385 TTAGA - CNOT1 Frame_Shift_Del p.N2149Kfs*7 0.36 TCGA-19-2629-01 17 10350506 10350506 T A MYH4 Missense_Mutation p.I1665F 0.16 tolerated(0.1) benign(0.051) TCGA-19-2629-01 17 10395868 10395868 G T MYH1 Silent p.V1895V 0.35 TCGA-19-2629-01 17 11757746 11757749 GTGA - DNAH9 Splice_Site p.X3311_splice 0.26 TCGA-19-2629-01 17 18906958 18906958 G A FAM83G Silent p.L133L 0.19 TCGA-19-2629-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.62 TCGA-19-2629-01 17 78185892 78185892 G A SGSH Silent p.S309S 0.35 TCGA-19-2629-01 18 42533090 42533090 G C SETBP1 Missense_Mutation p.R1262T 0.09 tolerated(0.16) possibly_damaging(0.451) TCGA-19-2629-01 18 47479673 47479674 TC - MYO5B Frame_Shift_Del p.D570Hfs*4 0.27 TCGA-19-2629-01 18 72343319 72343319 C A ZNF407 Missense_Mutation p.T115N 0.07 tolerated(0.09) benign(0.015) TCGA-19-2629-01 19 15807863 15807863 C T CYP4F12 Missense_Mutation p.R515W 0.20 tolerated(0.06) benign(0.056) TCGA-19-2629-01 19 38125751 38125751 C T ZFP30 3'UTR 0.50 TCGA-19-2629-01 19 4298041 4298042 TA - TMIGD2 Frame_Shift_Del p.V116Gfs*4 0.22 TCGA-19-2629-01 19 57641232 57641232 A G USP29 Missense_Mutation p.T397A 0.16 tolerated(0.09) benign(0.334) TCGA-19-2629-01 19 6751206 6751206 G A TRIP10 Missense_Mutation p.R541Q 0.59 tolerated(0.16) benign(0.008) TCGA-19-2629-01 1 154966061 154966064 CCTT - LENEP 5'UTR 0.14 TCGA-19-2629-01 1 155989853 155989853 C A SSR2 Nonsense_Mutation p.E36* 0.42 TCGA-19-2629-01 1 158670186 158670186 A G OR6K2 Missense_Mutation p.L86P 0.43 deleterious(0) possibly_damaging(0.809) TCGA-19-2629-01 1 161182256 161182256 C T NDUFS2 Nonsense_Mutation p.R368* 0.18 TCGA-19-2629-01 1 162257211 162257213 GAA - NOS1AP In_Frame_Del p.K90del 0.33 TCGA-19-2629-01 1 78470832 78470832 A G DNAJB4 Missense_Mutation p.K13R 0.19 tolerated(0.91) benign(0.039) TCGA-19-2629-01 1 86822223 86822223 C T ODF2L Silent p.A474A 0.40 TCGA-19-2629-01 1 93620253 93620256 CAAA - TMED5 Frame_Shift_Del p.F221Kfs*13 0.42 TCGA-19-2629-01 20 33572918 33572918 C T MYH7B Missense_Mutation p.A306V 0.16 possibly_damaging(0.766) TCGA-19-2629-01 20 40911144 40911144 G A PTPRT Missense_Mutation p.R721C 0.21 deleterious(0) probably_damaging(0.976) TCGA-19-2629-01 21 35821746 35821746 G T KCNE1 Missense_Mutation p.L63M 0.22 tolerated(0.08) possibly_damaging(0.848) TCGA-19-2629-01 21 45971183 45971183 C G KRTAP10-2 Silent p.V53V 0.44 TCGA-19-2629-01 22 16256526 16256526 T C POTEH 3'UTR 0.10 TCGA-19-2629-01 22 31137202 31137202 G A OSBP2 Silent p.A233A 0.10 TCGA-19-2629-01 22 37492125 37492125 C - TMPRSS6 Frame_Shift_Del p.G146Dfs*19 0.33 TCGA-19-2629-01 22 37707507 37707507 C T CYTH4 Missense_Mutation p.P299L 0.27 deleterious(0.01) probably_damaging(0.984) TCGA-19-2629-01 22 38890068 38890069 TT - DDX17 Frame_Shift_Del p.K428Efs*4 0.18 TCGA-19-2629-01 22 41077826 41077826 G A MCHR1 Missense_Mutation p.R388H 0.15 deleterious(0) possibly_damaging(0.818) TCGA-19-2629-01 2 110350668 110350668 G C SEPT10 Missense_Mutation p.T20R 0.10 tolerated(0.29) benign(0.009) TCGA-19-2629-01 2 152518698 152518698 T C NEB Missense_Mutation p.D1974G 0.31 probably_damaging(1) TCGA-19-2629-01 2 169404150 169404150 A G CERS6 Missense_Mutation p.N72S 0.11 tolerated(0.92) benign(0.002) TCGA-19-2629-01 2 208988968 208988968 G A CRYGD Silent p.S40S 0.12 TCGA-19-2629-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.33 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-19-2629-01 2 219521105 219521105 C T ZNF142 Silent p.E16E 0.46 TCGA-19-2629-01 2 27165614 27165616 AGA - DPYSL5 In_Frame_Del p.K480del 0.30 TCGA-19-2629-01 2 27258019 27258019 T A TMEM214 Missense_Mutation p.L123Q 0.50 deleterious(0) possibly_damaging(0.902) TCGA-19-2629-01 2 75745200 75745200 C A EVA1A Missense_Mutation p.A23S 0.31 tolerated(0.07) benign(0.006) TCGA-19-2629-01 2 8872006 8872006 T C KIDINS220 Missense_Mutation p.Y1387C 0.36 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-2629-01 2 99858783 99858783 C G LYG2 3'UTR 0.07 TCGA-19-2629-01 3 112724550 112724550 T C C3orf17 Missense_Mutation p.M513V 0.39 tolerated(0.32) benign(0.002) TCGA-19-2629-01 3 126138549 126138549 G A CCDC37 Silent p.S267S 0.14 TCGA-19-2629-01 3 13432743 13432743 C T NUP210 Silent p.A167A 0.27 TCGA-19-2629-01 3 148903188 148903188 C T CP Missense_Mutation p.G708D 0.03 deleterious(0) probably_damaging(1) TCGA-19-2629-01 3 15094113 15094115 CTC - MRPS25 In_Frame_Del p.E119del 0.12 TCGA-19-2629-01 3 157213090 157213090 C A VEPH1 Missense_Mutation p.A17S 0.12 deleterious(0) probably_damaging(0.999) TCGA-19-2629-01 3 49463788 49463788 T G NICN1 Missense_Mutation p.H69P 0.22 deleterious(0.05) benign(0.001) TCGA-19-2629-01 3 50396188 50396190 AGA - TMEM115 In_Frame_Del p.F102del 0.13 TCGA-19-2629-01 4 120213685 120213686 CT - USP53 Frame_Shift_Del p.S848Cfs*9 0.19 TCGA-19-2629-01 4 138442804 138442804 G T PCDH18 Missense_Mutation p.D929E 0.18 deleterious(0) probably_damaging(0.997) TCGA-19-2629-01 4 167921580 167921580 C T SPOCK3 Missense_Mutation p.M93I 0.11 tolerated(0.3) benign(0.001) TCGA-19-2629-01 4 170926952 170926952 G A MFAP3L Missense_Mutation p.A26V 0.56 tolerated(0.06) benign(0.002) TCGA-19-2629-01 4 17845104 17845106 AAG - NCAPG 3'UTR 0.12 TCGA-19-2629-01 4 187003773 187003773 G A TLR3 Silent p.Q311Q 0.09 TCGA-19-2629-01 4 25019723 25019723 C A LGI2 Missense_Mutation p.W181C 0.57 deleterious(0) probably_damaging(0.997) TCGA-19-2629-01 4 68777039 68777039 T G TMPRSS11A 3'UTR 0.14 TCGA-19-2629-01 4 69798344 69798344 A G UGT2A3 Splice_Site p.X332_splice 0.06 TCGA-19-2629-01 5 150934173 150934173 A G FAT2 Missense_Mutation p.I1232T 0.38 benign(0.217) TCGA-19-2629-01 5 156381617 156381617 C T TIMD4 Missense_Mutation p.R70H 0.08 tolerated(1) benign(0.001) TCGA-19-2629-01 5 176520301 176520301 A C FGFR4 Missense_Mutation p.Q407P 0.06 deleterious(0.03) possibly_damaging(0.791) TCGA-19-2629-01 5 35771803 35771804 - A SPEF2 Frame_Shift_Ins p.V1301Sfs*18 0.10 TCGA-19-2629-01 5 67589619 67589621 GAG - PIK3R1 In_Frame_Del p.R461_E462delinsQ 0.38 TCGA-19-2629-01 5 78752779 78752781 TTC - HOMER1 In_Frame_Del p.K22del 0.46 TCGA-19-2629-01 6 24563608 24563608 A G KIAA0319 Missense_Mutation p.I857T 0.14 deleterious(0) possibly_damaging(0.839) TCGA-19-2629-01 6 26250643 26250643 C T HIST1H3F Missense_Mutation p.R64H 0.21 deleterious_low_confidence(0.05) possibly_damaging(0.464) TCGA-19-2629-01 6 35477607 35477607 T C TULP1 Missense_Mutation p.K200E 0.13 tolerated(0.09) benign(0.059) TCGA-19-2629-01 6 38690689 38690689 G A DNAH8 5'Flank 0.12 TCGA-19-2629-01 6 57055306 57055309 TTTG - RAB23 Frame_Shift_Del p.Q222Gfs*24 0.22 TCGA-19-2629-01 6 88769216 88769216 A C SPACA1 Missense_Mutation p.K174Q 0.59 deleterious(0) benign(0.012) TCGA-19-2629-01 7 117180363 117180363 C G CFTR Missense_Mutation p.T360R 0.17 deleterious(0.01) benign(0.008) TCGA-19-2629-01 7 149477563 149477563 C A SSPO RNA 0.12 TCGA-19-2629-01 7 31617703 31617703 G A CCDC129 Silent p.E301E 0.11 TCGA-19-2629-01 7 98636097 98636099 GTT - SMURF1 In_Frame_Del p.N560del 0.10 TCGA-19-2629-01 8 102705056 102705056 T C NCALD Silent p.T149T 0.33 TCGA-19-2629-01 8 110460477 110460477 A G PKHD1L1 Missense_Mutation p.N1961S 0.30 tolerated(0.92) benign(0.015) TCGA-19-2629-01 8 120651059 120651060 TT - ENPP2 5'UTR 0.14 TCGA-19-2629-01 8 125047566 125047566 G A FER1L6 Missense_Mutation p.V779M 0.15 tolerated(0.1) benign(0.439) TCGA-19-2629-01 8 145540703 145540704 GG A DGAT1 Frame_Shift_Del p.A410Vfs*10 0.22 TCGA-19-2629-01 8 22106020 22106020 C T POLR3D Silent p.N171N 0.18 TCGA-19-2629-01 8 25287394 25287394 G A KCTD9 Silent p.H383H 0.15 TCGA-19-2629-01 8 38315026 38315026 A T FGFR1 Missense_Mutation p.L13H 0.12 deleterious_low_confidence(0) unknown(0) TCGA-19-2629-01 8 59058884 59058884 A T FAM110B Missense_Mutation p.K32M 0.08 deleterious(0) probably_damaging(0.998) TCGA-19-2629-01 8 71069277 71069277 A G NCOA2 Silent p.F441F 0.13 TCGA-19-2629-01 8 87235301 87235301 G - SLC7A13 Frame_Shift_Del p.K240Nfs*10 0.10 TCGA-19-2629-01 9 100235814 100235814 G T TDRD7 Missense_Mutation p.C662F 0.35 tolerated(0.13) probably_damaging(0.998) TCGA-19-2629-01 9 115181194 115181194 A - HSDL2 Frame_Shift_Del p.E185Dfs*65 0.21 TCGA-19-2629-01 9 69424177 69424177 A G ANKRD20A4 3'UTR 0.21 TCGA-19-2629-01 9 71687595 71687595 G T FXN Nonsense_Mutation p.E184* 0.16 TCGA-19-2629-01 X 12885651 12885652 CT - TLR7 5'UTR 0.46 TCGA-19-2629-01 X 76939674 76939676 TTT C ATRX Frame_Shift_Del p.K358Afs*3 0.60 TCGA-19-2631-01 10 105005929 105005929 A G RPEL1 Missense_Mutation p.K59R 0.75 tolerated(0.12) benign(0.422) TCGA-19-2631-01 10 27324683 27324683 T C ANKRD26 Splice_Site p.X900_splice 0.68 TCGA-19-2631-01 10 98173027 98173027 C T TLL2 Missense_Mutation p.V324I 0.70 tolerated(0.64) benign(0) TCGA-19-2631-01 11 2181187 2181187 G C INS Missense_Mutation p.S76R 0.18 tolerated(0.41) benign(0.009) TCGA-19-2631-01 11 36595309 36595309 C T RAG1 Missense_Mutation p.P152L 0.43 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-19-2631-01 11 44077630 44077630 A - ACCSL Frame_Shift_Del p.S394Vfs*25 0.35 TCGA-19-2631-01 11 46341859 46341859 T C CREB3L1 Missense_Mutation p.W435R 0.33 tolerated(0.22) benign(0.169) TCGA-19-2631-01 11 59211096 59211096 A T OR5A1 Missense_Mutation p.Y152F 0.40 tolerated(0.09) benign(0.327) TCGA-19-2631-01 11 6291993 6291993 C T CCKBR Silent p.S257S 0.44 TCGA-19-2631-01 11 67225877 67225877 G A CABP4 Silent p.A229A 0.45 TCGA-19-2631-01 11 69588023 69588023 C T FGF4 3'UTR 0.39 TCGA-19-2631-01 12 116446291 116446291 C G MED13L Missense_Mutation p.D643H 0.27 deleterious(0.01) unknown(0) TCGA-19-2631-01 12 123687854 123687854 G A MPHOSPH9 Silent p.N269N 0.14 TCGA-19-2631-01 12 49688916 49688916 G A PRPH 5'UTR 0.45 TCGA-19-2631-01 12 52828035 52828035 G A KRT75 Silent p.S18S 0.08 TCGA-19-2631-01 12 55886262 55886262 T A OR6C68 Missense_Mutation p.M34K 0.44 deleterious_low_confidence(0) benign(0.348) TCGA-19-2631-01 12 62148677 62148677 G A FAM19A2 Nonsense_Mutation p.R79* 0.43 TCGA-19-2631-01 13 107145255 107145255 C T EFNB2 3'UTR 0.36 TCGA-19-2631-01 14 24730965 24730965 A G TGM1 Silent p.H148H 0.44 TCGA-19-2631-01 14 35465958 35465958 C T SRP54 Missense_Mutation p.R15C 0.39 deleterious(0.02) probably_damaging(0.914) TCGA-19-2631-01 14 38286819 38286819 G A TTC6 Missense_Mutation p.G1576R 0.40 tolerated(0.65) possibly_damaging(0.77) TCGA-19-2631-01 14 58471770 58471770 C G C14orf37 Missense_Mutation p.R751T 0.30 deleterious(0) benign(0.402) TCGA-19-2631-01 15 101924538 101924538 G A PCSK6 Missense_Mutation p.A467V 0.44 tolerated(0.29) possibly_damaging(0.627) TCGA-19-2631-01 15 25336832 25336832 A C SNORD116-23 5'Flank 0.40 TCGA-19-2631-01 15 79614657 79614657 A G TMED3 3'UTR 0.10 TCGA-19-2631-01 15 90177007 90177007 C A KIF7 Missense_Mutation p.Q834H 0.06 deleterious(0.02) probably_damaging(0.999) TCGA-19-2631-01 16 20359594 20359594 C T UMOD Silent p.S308S 0.36 TCGA-19-2631-01 16 31373991 31373991 C T ITGAX Missense_Mutation p.R426C 0.40 deleterious(0) probably_damaging(1) TCGA-19-2631-01 16 4863830 4863830 C T GLYR1 Missense_Mutation p.G343S 0.29 deleterious(0) probably_damaging(0.972) TCGA-19-2631-01 16 83828675 83828675 A G CDH13 3'UTR 0.11 TCGA-19-2631-01 16 863402 863402 T A PRR25 Silent p.T250T 0.25 TCGA-19-2631-01 17 18138556 18138556 C G LLGL1 Missense_Mutation p.P405R 0.39 deleterious(0) possibly_damaging(0.873) TCGA-19-2631-01 17 21319068 21319068 C T KCNJ12 Silent p.I138I 0.11 TCGA-19-2631-01 17 34074081 34074081 G A GAS2L2 Missense_Mutation p.R347W 0.37 tolerated(0.28) benign(0.002) TCGA-19-2631-01 17 34151174 34151174 G T TAF15 Missense_Mutation p.D193Y 0.30 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-19-2631-01 17 61607575 61607575 T C KCNH6 Missense_Mutation p.L144S 0.36 tolerated(0.33) benign(0.027) TCGA-19-2631-01 18 247872 247874 TCT - THOC1 In_Frame_Del p.K254del 0.38 TCGA-19-2631-01 18 29496353 29496353 A - TRAPPC8 Frame_Shift_Del p.S167Hfs*33 0.37 TCGA-19-2631-01 18 43572096 43572096 G A PSTPIP2 Missense_Mutation p.R272C 0.27 deleterious(0) possibly_damaging(0.901) TCGA-19-2631-01 18 57102986 57102986 C T CCBE1 3'UTR 0.29 TCGA-19-2631-01 19 1438502 1438502 C T RPS15 Intron 0.21 TCGA-19-2631-01 19 17919127 17919127 G A B3GNT3 Missense_Mutation p.G171R 0.39 tolerated(0.26) benign(0.391) TCGA-19-2631-01 19 46338456 46338456 C T SYMPK Missense_Mutation p.A425T 0.29 tolerated(1) benign(0) TCGA-19-2631-01 19 49106813 49106813 G A FAM83E Missense_Mutation p.R372C 0.37 tolerated(0.06) benign(0.023) TCGA-19-2631-01 19 6477231 6477231 G C DENND1C Missense_Mutation p.P171A 0.06 tolerated(0.46) benign(0.032) TCGA-19-2631-01 19 8997532 8997532 G A MUC16 Silent p.A13630A 0.36 TCGA-19-2631-01 1 159015232 159015232 C A IFI16 Missense_Mutation p.P492Q 0.32 deleterious(0.02) benign(0.43) TCGA-19-2631-01 1 247978223 247978223 A G OR14A16 Missense_Mutation p.V270A 0.46 tolerated(0.08) possibly_damaging(0.602) TCGA-19-2631-01 1 32740425 32740425 C T LCK Intron 0.51 TCGA-19-2631-01 1 76387766 76387766 T A ASB17 Missense_Mutation p.K227M 0.43 deleterious_low_confidence(0.02) benign(0.002) TCGA-19-2631-01 20 18511418 18511418 A G SEC23B Missense_Mutation p.M402V 0.20 deleterious(0.03) benign(0.141) TCGA-19-2631-01 20 36030005 36030005 G A SRC Missense_Mutation p.G347E 0.27 deleterious(0.01) probably_damaging(1) TCGA-19-2631-01 20 39986528 39986528 G T LPIN3 Silent p.G682G 0.21 TCGA-19-2631-01 20 49574949 49574949 C T DPM1 Missense_Mutation p.E38K 0.29 tolerated(0.16) possibly_damaging(0.722) TCGA-19-2631-01 20 50007936 50007936 C T NFATC2 Silent p.T925T 0.21 TCGA-19-2631-01 21 19651292 19651292 A T TMPRSS15 Missense_Mutation p.V918D 0.35 tolerated(0.49) benign(0.001) TCGA-19-2631-01 22 21348000 21348000 G A LZTR1 Nonsense_Mutation p.W437* 0.68 TCGA-19-2631-01 2 108455335 108455335 A T RGPD4 Missense_Mutation p.N107I 0.57 tolerated(0.14) possibly_damaging(0.902) TCGA-19-2631-01 2 152492741 152492741 G A NEB Silent p.D3034D 0.51 TCGA-19-2631-01 2 167159653 167159653 T C SCN9A Missense_Mutation p.N283S 0.41 tolerated(0.11) benign(0.017) TCGA-19-2631-01 2 187713851 187713851 G T ZSWIM2 Missense_Mutation p.R3S 0.38 deleterious_low_confidence(0.04) possibly_damaging(0.571) TCGA-19-2631-01 2 201846441 201846441 C T FAM126B Missense_Mutation p.R382H 0.50 deleterious(0.03) benign(0.006) TCGA-19-2631-01 2 207176262 207176262 G A ZDBF2 Missense_Mutation p.R2337H 0.36 deleterious(0.02) benign(0) TCGA-19-2631-01 2 233394744 233394744 T C CHRND Missense_Mutation p.Y239H 0.40 deleterious(0.03) probably_damaging(1) TCGA-19-2631-01 2 242592988 242592988 C G ATG4B Missense_Mutation p.I82M 0.55 tolerated(0.64) benign(0.137) TCGA-19-2631-01 3 138216906 138216906 G A CEP70 Nonsense_Mutation p.Q567* 0.33 TCGA-19-2631-01 3 174814645 174814645 G A NAALADL2 Missense_Mutation p.D37N 0.40 deleterious(0) benign(0.376) TCGA-19-2631-01 3 58141766 58141766 C T FLNB Silent p.S2315S 0.24 TCGA-19-2631-01 3 78711202 78711202 C T ROBO1 Missense_Mutation p.V677I 0.56 tolerated(0.46) probably_damaging(0.97) TCGA-19-2631-01 4 151357950 151357950 C A LRBA Missense_Mutation p.D2294Y 0.06 deleterious(0) probably_damaging(0.91) TCGA-19-2631-01 4 155528109 155528109 C T FGG Missense_Mutation p.V293M 0.38 deleterious(0.02) probably_damaging(0.969) TCGA-19-2631-01 4 55131142 55131142 G A PDGFRA Missense_Mutation p.E229K 0.03 deleterious(0) probably_damaging(0.969) TCGA-19-2631-01 5 101585466 101585466 G A SLCO4C1 Missense_Mutation p.A499V 0.40 tolerated(0.09) benign(0.183) TCGA-19-2631-01 5 137682463 137682463 A G FAM53C Missense_Mutation p.M332V 0.42 tolerated(0.71) benign(0.14) TCGA-19-2631-01 5 140167728 140167728 C T PCDHA1 Missense_Mutation p.A618V 0.52 tolerated_low_confidence(0.18) benign(0.1) TCGA-19-2631-01 5 14397231 14397231 C A TRIO Missense_Mutation p.A1464D 0.11 probably_damaging(1) TCGA-19-2631-01 5 180048821 180048821 C T FLT4 Missense_Mutation p.D581N 0.37 deleterious(0) probably_damaging(0.999) TCGA-19-2631-01 5 35659271 35659271 C T SPEF2 Nonsense_Mutation p.R377* 0.42 TCGA-19-2631-01 5 43040065 43040065 C T ANXA2R Silent p.V28V 0.33 TCGA-19-2631-01 5 52145207 52145207 C T ITGA1 Missense_Mutation p.R24C 0.35 tolerated(0.05) benign(0.205) TCGA-19-2631-01 5 79855139 79855139 C T ANKRD34B Missense_Mutation p.A234T 0.39 tolerated(0.38) benign(0.001) TCGA-19-2631-01 6 106555476 106555476 G A PRDM1 3'UTR 0.25 TCGA-19-2631-01 6 27806423 27806423 G C HIST1H2BN 5'Flank 0.36 TCGA-19-2631-01 6 51768472 51768472 C T PKHD1 Missense_Mutation p.G2307S 0.31 deleterious(0.03) probably_damaging(0.982) TCGA-19-2631-01 6 55638880 55638880 G A BMP5 Missense_Mutation p.H332Y 0.39 tolerated(1) benign(0.002) TCGA-19-2631-01 6 56883316 56883316 C G BEND6 Missense_Mutation p.S270R 0.33 deleterious_low_confidence(0) benign(0.386) TCGA-19-2631-01 6 62611257 62611257 C T KHDRBS2 Missense_Mutation p.R168H 0.05 tolerated(0.17) probably_damaging(0.981) TCGA-19-2631-01 6 84303343 84303343 G C SNAP91 Missense_Mutation p.P517R 0.08 deleterious(0.01) possibly_damaging(0.804) TCGA-19-2631-01 6 91266234 91266234 G A MAP3K7 Missense_Mutation p.P198S 0.04 deleterious(0) probably_damaging(1) TCGA-19-2631-01 7 100485931 100485931 C G SRRT Missense_Mutation p.P828A 0.36 tolerated(0.22) benign(0.412) TCGA-19-2631-01 7 112724397 112724397 C T GPR85 Missense_Mutation p.R127H 0.25 deleterious(0) probably_damaging(0.953) TCGA-19-2631-01 7 53104337 53104337 G C POM121L12 3'UTR 0.33 TCGA-19-2631-01 7 64293145 64293145 G C ZNF138 3'Flank 0.09 TCGA-19-2631-01 7 92163996 92163997 TT - RBM48 Frame_Shift_Del p.L244Afs*28 0.24 TCGA-19-2631-01 8 39626970 39626970 C A ADAM2 Missense_Mutation p.A385S 0.47 tolerated(0.36) benign(0.006) TCGA-19-2631-01 8 41522530 41522530 G A ANK1 Intron 0.45 TCGA-19-2631-01 9 6012502 6012502 T G RANBP6 Missense_Mutation p.I1036L 0.43 tolerated(1) benign(0) TCGA-19-2631-01 9 84200544 84200544 G A TLE1 Silent p.T668T 0.21 TCGA-19-2631-01 9 97081002 97081002 G T NUTM2F Silent p.P672P 0.21 TCGA-19-2631-01 9 99694201 99694201 G A NUTM2G Missense_Mutation p.G72S 0.06 tolerated(0.06) benign(0.223) TCGA-19-2631-01 X 105159747 105159747 C T NRK Missense_Mutation p.P793L 0.23 deleterious(0) benign(0.44) TCGA-19-2631-01 X 111914414 111914414 G A LHFPL1 Missense_Mutation p.R69C 0.33 deleterious(0) probably_damaging(0.998) TCGA-19-2631-01 X 114082719 114082719 G A HTR2C Missense_Mutation p.R168Q 0.31 deleterious(0.01) probably_damaging(0.928) TCGA-19-2631-01 X 140985023 140985023 T C MAGEC3 Silent p.Y493Y 0.55 TCGA-19-2631-01 X 149924177 149924177 C T MTMR1 Missense_Mutation p.T558M 0.54 deleterious(0) probably_damaging(0.987) TCGA-19-2631-01 X 152610868 152610868 G A ZNF275 Intron 0.12 TCGA-19-2631-01 X 153736149 153736149 C A FAM3A Missense_Mutation p.W126C 0.10 deleterious(0) probably_damaging(0.994) TCGA-19-2631-01 X 18183013 18183013 G C BEND2 3'UTR 0.42 TCGA-19-2631-01 X 2407889 2407889 A G ZBED1 Missense_Mutation p.L291P 0.24 deleterious(0) probably_damaging(0.935) TCGA-19-2631-01 X 25031255 25031255 C G ARX Missense_Mutation p.G286A 0.13 deleterious(0.01) probably_damaging(0.91) TCGA-19-2631-01 X 32305784 32305784 C T DMD Missense_Mutation p.R2051Q 0.31 benign(0.417) TCGA-19-2631-01 X 48433596 48433596 G C RBM3 Missense_Mutation p.V10L 0.23 tolerated(0.08) benign(0.058) TCGA-19-2631-01 X 49851112 49851114 ACA CC CLCN5 Frame_Shift_Del p.H381Pfs*48 0.19 TCGA-19-2631-01 X 84526932 84526932 C A ZNF711 3'UTR 0.59 TCGA-19-4065-01 10 89653783 89653783 T G PTEN Nonsense_Mutation p.Y27* 0.65 TCGA-19-4065-01 11 33350091 33350091 A G HIPK3 Missense_Mutation p.E378G 0.07 deleterious(0) probably_damaging(0.999) TCGA-19-4065-01 11 5602496 5602496 C T OR52B6 Silent p.H130H 0.25 TCGA-19-4065-01 12 48374399 48374399 C T COL2A1 Missense_Mutation p.G855S 0.47 unknown(0) TCGA-19-4065-01 12 54936426 54936426 G A NCKAP1L Missense_Mutation p.R1114Q 0.44 deleterious(0) probably_damaging(0.988) TCGA-19-4065-01 12 56487212 56487212 G A ERBB3 Missense_Mutation p.R453H 0.12 tolerated(0.06) possibly_damaging(0.859) TCGA-19-4065-01 12 88379766 88379766 C T C12orf50 Silent p.A329A 0.12 TCGA-19-4065-01 14 107211135 107211135 C A IGHV3-73 Missense_Mutation p.A52S 0.09 tolerated_low_confidence(0.26) benign(0.049) TCGA-19-4065-01 14 23857123 23857123 C T MYH6 Missense_Mutation p.E1457K 0.21 deleterious(0.01) possibly_damaging(0.895) TCGA-19-4065-01 14 94731806 94731806 G A PPP4R4 Silent p.S760S 0.21 TCGA-19-4065-01 16 21063182 21063182 G A DNAH3 Silent p.D1349D 0.40 TCGA-19-4065-01 16 21133323 21133323 C A DNAH3 Missense_Mutation p.W509C 0.23 tolerated(0.18) benign(0.008) TCGA-19-4065-01 16 28331770 28331770 G A SBK1 Missense_Mutation p.R268H 0.14 tolerated(0.07) benign(0.022) TCGA-19-4065-01 16 2983824 2983824 C T FLYWCH1 Missense_Mutation p.R452W 0.36 deleterious(0) possibly_damaging(0.835) TCGA-19-4065-01 17 18022742 18022742 G T MYO15A Missense_Mutation p.D210Y 0.10 probably_damaging(0.984) TCGA-19-4065-01 17 26943134 26943134 G A KIAA0100 Missense_Mutation p.P2124S 0.31 tolerated(0.17) possibly_damaging(0.667) TCGA-19-4065-01 17 28783319 28783319 A G CPD Missense_Mutation p.N1128S 0.46 tolerated(0.81) benign(0.07) TCGA-19-4065-01 17 39553521 39553521 G A KRT31 Missense_Mutation p.R91W 0.19 tolerated(1) benign(0.009) TCGA-19-4065-01 17 42429380 42429380 C T GRN Intron 0.38 TCGA-19-4065-01 17 51901091 51901091 C A KIF2B Missense_Mutation p.L233M 0.36 deleterious(0) probably_damaging(0.992) TCGA-19-4065-01 17 67282143 67282144 AG - ABCA5 Frame_Shift_Del p.L723Ffs*5 0.12 TCGA-19-4065-01 17 7578475 7578475 G A TP53 Missense_Mutation p.P152L 0.51 tolerated(0.08) probably_damaging(0.91) TCGA-19-4065-01 18 6955508 6955508 G A LAMA1 Intron 0.31 TCGA-19-4065-01 18 70526183 70526183 C T NETO1 Missense_Mutation p.R116H 0.37 deleterious(0) probably_damaging(0.999) TCGA-19-4065-01 19 1805885 1805885 A G ATP8B3 Splice_Site p.X274_splice 0.13 TCGA-19-4065-01 19 3778348 3778348 C T MATK Missense_Mutation p.V454M 0.13 deleterious(0) possibly_damaging(0.903) TCGA-19-4065-01 19 51175363 51175363 G A SHANK1 Silent p.F862F 0.14 TCGA-19-4065-01 19 625254 625254 C T POLRMT Missense_Mutation p.G275S 0.13 deleterious(0) probably_damaging(0.991) TCGA-19-4065-01 1 167096378 167096378 C T DUSP27 Silent p.S670S 0.22 TCGA-19-4065-01 1 169858003 169858003 C T SCYL3 5'UTR 0.35 TCGA-19-4065-01 1 216595484 216595484 A G USH2A Silent p.T65T 0.20 TCGA-19-4065-01 1 228467930 228467930 G A OBSCN Missense_Mutation p.E3001K 0.23 probably_damaging(0.979) TCGA-19-4065-01 1 237619999 237619999 T C RYR2 Missense_Mutation p.W526R 0.27 benign(0.241) TCGA-19-4065-01 1 248059704 248059704 G T OR2W3 Missense_Mutation p.M272I 0.18 deleterious(0) benign(0.004) TCGA-19-4065-01 20 32873385 32873385 C T AHCY Missense_Mutation p.R343Q 0.42 tolerated_low_confidence(0.13) benign(0.084) TCGA-19-4065-01 21 28210446 28210446 A G ADAMTS1 Missense_Mutation p.S786P 0.21 deleterious(0) probably_damaging(0.995) TCGA-19-4065-01 2 103120101 103120101 C T SLC9A4 Silent p.I305I 0.23 TCGA-19-4065-01 2 108627021 108627021 G T SLC5A7 Missense_Mutation p.A483S 0.11 tolerated(0.62) benign(0.004) TCGA-19-4065-01 2 113742456 113742456 G A IL36G Missense_Mutation p.V114M 0.19 tolerated(0.13) benign(0.261) TCGA-19-4065-01 2 138033555 138033555 C T THSD7B Missense_Mutation p.T820M 0.29 tolerated(0.37) possibly_damaging(0.897) TCGA-19-4065-01 2 27479379 27479379 C T SLC30A3 Missense_Mutation p.R298H 0.17 deleterious(0.02) benign(0.033) TCGA-19-4065-01 3 36899101 36899101 A G TRANK1 Silent p.P660P 0.22 TCGA-19-4065-01 3 97677910 97677910 A G MINA Silent p.H222H 0.31 TCGA-19-4065-01 3 98491723 98491723 C T ST3GAL6 Silent p.S78S 0.30 TCGA-19-4065-01 4 155219544 155219544 A G DCHS2 Silent p.D1519D 0.10 TCGA-19-4065-01 4 159573137 159573137 C T RXFP1 Missense_Mutation p.P735L 0.15 deleterious_low_confidence(0) possibly_damaging(0.548) TCGA-19-4065-01 5 122893207 122893207 G A CSNK1G3 Missense_Mutation p.A80T 0.45 deleterious(0.03) benign(0.233) TCGA-19-4065-01 5 174868677 174868677 G A DRD1 3'UTR 0.26 TCGA-19-4065-01 5 180048765 180048765 G A FLT4 Silent p.H599H 0.19 TCGA-19-4065-01 6 27114602 27114602 G A HIST1H2BK 5'UTR 0.32 TCGA-19-4065-01 6 40400190 40400190 G C LRFN2 Silent p.S221S 0.21 TCGA-19-4065-01 6 76720901 76720902 - T IMPG1 Frame_Shift_Ins p.I283Nfs*7 0.26 TCGA-19-4065-01 7 106509875 106509875 T A PIK3CG Missense_Mutation p.D623E 0.23 tolerated(0.28) possibly_damaging(0.449) TCGA-19-4065-01 7 114268843 114268843 C A FOXP2 Intron 0.20 TCGA-19-4065-01 7 94293026 94293026 A G PEG10 Missense_Mutation p.E53G 0.18 tolerated_low_confidence(0.07) benign(0.016) TCGA-19-4065-01 8 124801932 124801932 G A FAM91A1 Missense_Mutation p.R453H 0.42 deleterious(0.02) probably_damaging(0.977) TCGA-19-4065-01 8 144944425 144944425 G T EPPK1 Silent p.G999G 0.42 TCGA-19-4065-01 9 109690780 109690780 C T ZNF462 Silent p.G1529G 0.27 TCGA-19-4065-01 9 112642886 112642886 A T PALM2-AKAP2 Missense_Mutation p.E61V 0.33 deleterious(0) benign(0.165) TCGA-19-4065-01 9 137686950 137686950 C T COL5A1 Missense_Mutation p.P908L 0.33 unknown(0) TCGA-19-4065-01 9 21480979 21480979 C G IFNE 3'UTR 0.42 TCGA-19-4065-01 9 21481720 21481720 C G IFNE 5'UTR 0.29 TCGA-19-4065-01 X 131212013 131212013 G A FRMD7 Missense_Mutation p.R678C 0.69 deleterious(0) probably_damaging(0.997) TCGA-19-4065-01 X 26212740 26212740 C T MAGEB6 Silent p.G259G 0.60 TCGA-19-4065-01 X 71877473 71877473 G A PHKA1 Missense_Mutation p.R295C 0.17 deleterious(0) probably_damaging(1) TCGA-19-4068-01 10 20453469 20453469 G A PLXDC2 Missense_Mutation p.V286I 0.06 tolerated(0.32) benign(0.426) TCGA-19-4068-01 10 26463063 26463063 C T MYO3A Silent p.S1290S 0.76 TCGA-19-4068-01 10 54076434 54076434 A G DKK1 Missense_Mutation p.H223R 0.68 deleterious(0) possibly_damaging(0.703) TCGA-19-4068-01 10 63170245 63170245 C T TMEM26 Silent p.S314S 0.75 TCGA-19-4068-01 11 103006524 103006524 C T DYNC2H1 Silent p.I807I 0.28 TCGA-19-4068-01 11 36597064 36597064 G A RAG1 Missense_Mutation p.R737H 0.43 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-19-4068-01 11 5529360 5529360 G A UBQLN3 Silent p.L477L 0.36 TCGA-19-4068-01 11 55587399 55587399 C T OR5D18 Silent p.C98C 0.37 TCGA-19-4068-01 11 55904467 55904467 G A OR8J3 Missense_Mutation p.S243L 0.44 deleterious(0) probably_damaging(0.999) TCGA-19-4068-01 11 57193641 57193641 G A SLC43A3 Missense_Mutation p.A2V 0.04 tolerated_low_confidence(0.12) benign(0.005) TCGA-19-4068-01 11 64884612 64884612 C T ZNHIT2 Missense_Mutation p.A172T 0.14 tolerated(0.55) possibly_damaging(0.821) TCGA-19-4068-01 12 109693958 109693958 G A ACACB Silent p.T2060T 0.39 TCGA-19-4068-01 12 123473301 123473301 T C PITPNM2 Silent p.S950S 0.20 TCGA-19-4068-01 12 53346096 53346096 G A KRT18 Missense_Mutation p.R381H 0.33 tolerated(0.28) benign(0.013) TCGA-19-4068-01 12 7519881 7519881 C T CD163L1 Silent p.E1410E 0.38 TCGA-19-4068-01 14 23861788 23861789 TC - MYH6 Frame_Shift_Del p.K1109Tfs*24 0.33 TCGA-19-4068-01 14 94464367 94464367 C G LINC00521 RNA 0.13 TCGA-19-4068-01 15 42160382 42160382 C A SPTBN5 Missense_Mutation p.R2031L 0.14 probably_damaging(0.915) TCGA-19-4068-01 15 50209193 50209193 G A ATP8B4 Silent p.D693D 0.41 TCGA-19-4068-01 15 76031447 76031447 C A AC019294.1 3'UTR 0.33 TCGA-19-4068-01 15 84257442 84257442 C T SH3GL3 Nonsense_Mutation p.R253* 0.36 TCGA-19-4068-01 17 19642827 19642827 G A ALDH3A1 Silent p.N370N 0.43 TCGA-19-4068-01 17 50212299 50212299 G A CA10 Intron 0.36 TCGA-19-4068-01 17 72283178 72283178 C T DNAI2 Silent p.D136D 0.40 TCGA-19-4068-01 18 12356814 12356814 C G AFG3L2 Missense_Mutation p.G348A 0.36 deleterious(0) probably_damaging(0.992) TCGA-19-4068-01 18 28986155 28986155 A G DSG4 Silent p.L584L 0.33 TCGA-19-4068-01 19 1105195 1105195 G A GPX4 Missense_Mutation p.R32Q 0.40 tolerated(0.64) benign(0.008) TCGA-19-4068-01 19 362390 362390 C T THEG Missense_Mutation p.R317Q 0.36 deleterious(0) probably_damaging(0.995) TCGA-19-4068-01 19 55341632 55341632 C T KIR3DL1 Missense_Mutation p.R413C 0.40 tolerated(0.1) benign(0.004) TCGA-19-4068-01 19 7808071 7808071 C T CD209 Missense_Mutation p.A357T 0.37 deleterious(0.04) benign(0.08) TCGA-19-4068-01 1 151789268 151789268 C T RORC Missense_Mutation p.R57Q 0.41 deleterious(0) probably_damaging(1) TCGA-19-4068-01 1 152127687 152127687 G T RPTN Missense_Mutation p.Q630K 0.41 tolerated(0.06) benign(0.342) TCGA-19-4068-01 1 185958748 185958748 C T HMCN1 Silent p.Y1059Y 0.47 TCGA-19-4068-01 1 201182690 201182690 C T IGFN1 Missense_Mutation p.T2890I 0.34 probably_damaging(0.931) TCGA-19-4068-01 1 6181182 6181182 G A CHD5 Missense_Mutation p.P1632L 0.54 deleterious_low_confidence(0.04) benign(0.001) TCGA-19-4068-01 1 9713992 9713992 G A C1orf200 Missense_Mutation p.R117C 0.14 tolerated_low_confidence(0.11) possibly_damaging(0.835) TCGA-19-4068-01 20 44665416 44665416 A G SLC12A5 Missense_Mutation p.T178A 0.38 deleterious(0) possibly_damaging(0.896) TCGA-19-4068-01 21 43767708 43767708 C T TFF2 Missense_Mutation p.R88Q 0.46 deleterious(0) probably_damaging(1) TCGA-19-4068-01 21 45970888 45970888 C T KRTAP10-2 Missense_Mutation p.V152M 0.41 tolerated(0.07) unknown(0) TCGA-19-4068-01 21 46021573 46021573 T G KRTAP10-7 Missense_Mutation p.V351G 0.41 deleterious(0.01) unknown(0) TCGA-19-4068-01 22 37964570 37964570 G A CDC42EP1 Missense_Mutation p.G307R 0.44 deleterious(0.04) unknown(0) TCGA-19-4068-01 2 116548904 116548904 C T DPP10 Nonsense_Mutation p.R562* 0.32 TCGA-19-4068-01 2 187627616 187627616 G A FAM171B 3'UTR 0.50 TCGA-19-4068-01 2 232325239 232325239 T C NCL Missense_Mutation p.E283G 0.38 possibly_damaging(0.905) TCGA-19-4068-01 3 100964883 100964883 C G IMPG2 Missense_Mutation p.D436H 0.39 deleterious(0) possibly_damaging(0.826) TCGA-19-4068-01 3 184090840 184090840 G A THPO Missense_Mutation p.R175W 0.32 deleterious(0) probably_damaging(0.984) TCGA-19-4068-01 3 33194586 33194586 G A SUSD5 Missense_Mutation p.T513M 0.38 tolerated(0.05) possibly_damaging(0.891) TCGA-19-4068-01 3 38048114 38048114 G T VILL Missense_Mutation p.G794W 0.06 deleterious(0) probably_damaging(0.976) TCGA-19-4068-01 3 48510545 48510545 G A SHISA5 Silent p.Y228Y 0.44 TCGA-19-4068-01 3 97124120 97124120 T A EPHA6 Splice_Site p.X577_splice 0.38 TCGA-19-4068-01 4 9452176 9452176 G - DEFB131 Frame_Shift_Del p.C50Lfs*10 0.25 TCGA-19-4068-01 5 101794118 101794138 TTCCAAGTTTCAGATCTTTAA - SLCO6A1 In_Frame_Del p.L360_T367delinsP 0.17 TCGA-19-4068-01 5 163559 163559 G A PLEKHG4B Silent p.P768P 0.39 TCGA-19-4068-01 5 180651777 180651777 G A TRIM41 Missense_Mutation p.V260M 0.36 deleterious(0) probably_damaging(0.997) TCGA-19-4068-01 5 65892596 65892596 C T MAST4 Missense_Mutation p.S38L 0.11 benign(0.001) TCGA-19-4068-01 6 31431546 31431546 C T HCP5 RNA 0.38 TCGA-19-4068-01 6 52141940 52141940 G A MCM3 Nonsense_Mutation p.R409* 0.38 TCGA-19-4068-01 6 55684540 55684540 C T BMP5 Missense_Mutation p.R199Q 0.32 deleterious(0.01) probably_damaging(0.978) TCGA-19-4068-01 6 56473343 56473343 T A DST Intron 0.08 TCGA-19-4068-01 7 107600245 107600245 G A LAMB1 Silent p.S783S 0.24 TCGA-19-4068-01 7 141955123 141955123 C T PRSS58 Missense_Mutation p.R63Q 0.20 tolerated(1) benign(0.005) TCGA-19-4068-01 7 38424257 38424258 TT - AMPH 3'UTR 0.27 TCGA-19-4068-01 7 62752857 62752857 T A ZNF733P RNA 0.09 TCGA-19-4068-01 7 93067382 93067382 G A CALCR Missense_Mutation p.A341V 0.25 tolerated(0.14) benign(0.02) TCGA-19-4068-01 8 100874087 100874087 C A VPS13B Silent p.R3735R 0.12 TCGA-19-4068-01 8 110463211 110463211 A T PKHD1L1 Silent p.G2061G 0.47 TCGA-19-4068-01 8 24251644 24251644 C G ADAMDEC1 Missense_Mutation p.T116R 0.38 tolerated(0.17) benign(0.083) TCGA-19-4068-01 8 28385048 28385048 G A FZD3 Silent p.L257L 0.36 TCGA-19-4068-01 8 37693258 37693258 G A GPR124 Missense_Mutation p.V674M 0.46 deleterious(0) probably_damaging(0.99) TCGA-19-4068-01 8 73993342 73993342 G A SBSPON Silent p.N107N 0.41 TCGA-19-4068-01 9 102591230 102591230 G A NR4A3 Silent p.Q313Q 0.13 TCGA-19-4068-01 9 130653179 130653179 C A ST6GALNAC6 Silent p.V147V 0.07 TCGA-19-4068-01 9 84609453 84609453 C A SPATA31D1 Silent p.T1356T 0.44 TCGA-19-4068-01 X 106769921 106769921 G A FRMPD3 Missense_Mutation p.V68M 0.38 deleterious(0.02) benign(0.339) TCGA-19-4068-01 X 115590033 115590033 G A SLC6A14 Missense_Mutation p.R614H 0.42 deleterious(0) probably_damaging(0.996) TCGA-19-4068-01 X 138643870 138643870 G A F9 Silent p.T342T 0.36 TCGA-19-4068-01 X 154194774 154194774 T - F8 Frame_Shift_Del p.T400Lfs*18 0.36 TCGA-19-4068-01 X 70466243 70466243 G T ZMYM3 Silent p.V844V 0.41 TCGA-19-4068-01 X 71428507 71428507 A T ERCC6L Missense_Mutation p.L37Q 0.28 deleterious(0) probably_damaging(0.971) TCGA-19-5947-01 11 108361783 108361783 C T KDELC2 Missense_Mutation p.R105K 0.17 tolerated(0.41) probably_damaging(0.995) TCGA-19-5947-01 11 124623728 124623728 A C ESAM Silent p.G329G 0.30 TCGA-19-5947-01 11 36615451 36615451 G C RAG2 Missense_Mutation p.Q90E 0.19 tolerated(0.17) benign(0.001) TCGA-19-5947-01 12 80611425 80611425 G T OTOGL Missense_Mutation p.W63C 0.17 deleterious(0.04) possibly_damaging(0.78) TCGA-19-5947-01 15 49118148 49118148 G A SHC4 3'UTR 0.25 TCGA-19-5947-01 15 65621380 65621380 T A IGDCC3 Missense_Mutation p.E771V 0.10 tolerated_low_confidence(0.16) benign(0) TCGA-19-5947-01 16 24581255 24581256 - A RBBP6 Frame_Shift_Ins p.I1084Nfs*11 0.14 TCGA-19-5947-01 17 71166297 71166297 T C SSTR2 Missense_Mutation p.V280A 0.29 tolerated(0.05) possibly_damaging(0.603) TCGA-19-5947-01 18 19405687 19405687 G A MIB1 Intron 0.21 TCGA-19-5947-01 18 74091275 74091275 G A ZNF516 Missense_Mutation p.T932M 0.27 deleterious(0) possibly_damaging(0.611) TCGA-19-5947-01 19 10230565 10230565 C T EIF3G 5'UTR 0.05 TCGA-19-5947-01 19 58578313 58578313 C T ZNF135 Missense_Mutation p.T178M 0.35 deleterious(0.05) possibly_damaging(0.742) TCGA-19-5947-01 1 118166220 118166220 C G FAM46C Missense_Mutation p.L244V 0.26 deleterious(0) probably_damaging(0.992) TCGA-19-5947-01 1 15392344 15392344 G A KAZN Intron 0.12 TCGA-19-5947-01 1 76288094 76288094 G A MSH4 Silent p.R330R 0.22 TCGA-19-5947-01 1 8424241 8424242 - T RERE Frame_Shift_Ins p.Y539Ifs*3 0.37 TCGA-19-5947-01 1 92941736 92941736 G A GFI1 Silent p.C373C 0.21 TCGA-19-5947-01 1 93303161 93303161 T C RPL5 Missense_Mutation p.Y226H 0.21 deleterious(0.02) probably_damaging(0.994) TCGA-19-5947-01 20 43851147 43851147 C T SEMG2 Missense_Mutation p.R292C 0.20 deleterious(0.01) possibly_damaging(0.84) TCGA-19-5947-01 21 31691566 31691566 T A KRTAP26-1 3'UTR 0.21 TCGA-19-5947-01 2 174104210 174104210 G A MLTK Missense_Mutation p.G449R 0.30 deleterious(0) possibly_damaging(0.771) TCGA-19-5947-01 2 31360949 31360949 G A GALNT14 Missense_Mutation p.R2W 0.05 deleterious_low_confidence(0) probably_damaging(0.976) TCGA-19-5947-01 3 142773820 142773820 G A U2SURP Missense_Mutation p.R937H 0.22 tolerated(0.12) unknown(0) TCGA-19-5947-01 3 178921548 178921548 G A PIK3CA Missense_Mutation p.V344M 0.24 deleterious(0) probably_damaging(0.987) TCGA-19-5947-01 3 52257538 52257538 C A TLR9 Missense_Mutation p.C419F 0.06 deleterious(0) probably_damaging(1) TCGA-19-5947-01 3 9594394 9594394 C A LHFPL4 5'UTR 0.40 TCGA-19-5947-01 5 132227876 132227877 - G AFF4 Frame_Shift_Ins p.S873Qfs*2 0.24 TCGA-19-5947-01 5 140209539 140209539 G A PCDHA6 Silent p.P621P 0.28 TCGA-19-5947-01 5 145439569 145439569 G A SH3RF2 Missense_Mutation p.V566M 0.35 tolerated(0.25) benign(0.009) TCGA-19-5947-01 5 67591150 67591153 GATG TAC PIK3R1 Splice_Site p.X581_splice 0.27 TCGA-19-5947-01 6 72957754 72957754 C A RIMS1 Missense_Mutation p.P722H 0.14 deleterious(0) benign(0.261) TCGA-19-5947-01 7 140301861 140301861 C T DENND2A Missense_Mutation p.G113R 0.25 tolerated(0.15) benign(0.021) TCGA-19-5947-01 X 139038184 139038184 T C CXorf66 Silent p.A319A 0.42 TCGA-19-5947-01 X 142967295 142967295 C T UBE2NL Silent p.N31N 0.38 TCGA-19-5950-01 10 7763617 7763617 C T ITIH2 Silent p.H248H 0.63 TCGA-19-5950-01 10 94653171 94653171 G A EXOC6 Missense_Mutation p.R56H 0.06 tolerated(0.15) benign(0.107) TCGA-19-5950-01 10 97194458 97194458 T A SORBS1 Missense_Mutation p.L31F 0.37 tolerated_low_confidence(0.07) benign(0.008) TCGA-19-5950-01 11 108172455 108172455 A G ATM Missense_Mutation p.Y1753C 0.51 deleterious(0.04) benign(0.005) TCGA-19-5950-01 11 116633616 116633616 C T BUD13 Missense_Mutation p.R230Q 0.43 deleterious(0.03) possibly_damaging(0.631) TCGA-19-5950-01 11 59132528 59132528 G A OR5AN1 Missense_Mutation p.M199I 0.40 tolerated(0.98) benign(0.004) TCGA-19-5950-01 12 56822356 56822356 C T TIMELESS Missense_Mutation p.R462K 0.43 tolerated(0.11) benign(0.011) TCGA-19-5950-01 12 75601221 75601221 G A KCNC2 Silent p.D181D 0.30 TCGA-19-5950-01 12 96076575 96076575 T G NTN4 Missense_Mutation p.H473P 0.39 tolerated(0.18) benign(0.065) TCGA-19-5950-01 14 106758082 106758082 A C IGHV2-26 Missense_Mutation p.L4R 0.05 deleterious(0) possibly_damaging(0.498) TCGA-19-5950-01 14 38061515 38061515 G A FOXA1 Silent p.D158D 0.17 TCGA-19-5950-01 14 67940157 67940157 C T TMEM229B Missense_Mutation p.G162S 0.29 tolerated_low_confidence(0.05) probably_damaging(0.997) TCGA-19-5950-01 15 101567475 101567475 C T LRRK1 Silent p.S805S 0.13 TCGA-19-5950-01 15 22709123 22709123 G A AC116165.1 5'Flank 0.29 TCGA-19-5950-01 15 49170372 49170372 C T EID1 5'UTR 0.14 TCGA-19-5950-01 15 89386832 89386832 C T ACAN Missense_Mutation p.T335M 0.27 deleterious(0) unknown(0) TCGA-19-5950-01 17 48917794 48917794 C T WFIKKN2 Missense_Mutation p.P382L 0.38 tolerated(0.38) benign(0.001) TCGA-19-5950-01 17 76557880 76557880 G A DNAH17 Silent p.P584P 0.14 TCGA-19-5950-01 18 9258903 9258903 C T ANKRD12 Missense_Mutation p.P1880S 0.26 deleterious(0) probably_damaging(0.985) TCGA-19-5950-01 19 19043759 19043784 CTCGCGCTCTGTGGGGCCGGGGGCAT TTCG HOMER3 Frame_Shift_Del p.D161Afs*4 0.25 TCGA-19-5950-01 19 34710329 34710329 G A LSM14A Missense_Mutation p.R272H 0.34 deleterious(0.01) probably_damaging(0.987) TCGA-19-5950-01 19 3907801 3907801 C T ATCAY Missense_Mutation p.T143M 0.29 tolerated(0.3) benign(0.224) TCGA-19-5950-01 19 51020753 51020753 G A LRRC4B 3'UTR 0.35 TCGA-19-5950-01 19 58571425 58571425 C T ZNF135 Intron 0.33 TCGA-19-5950-01 19 58966544 58966544 G A ZNF324B Intron 0.33 TCGA-19-5950-01 1 22903296 22903296 C T EPHA8 Missense_Mutation p.A249V 0.23 tolerated(0.09) possibly_damaging(0.486) TCGA-19-5950-01 1 32828323 32828323 C A TSSK3 Silent p.S7S 0.42 TCGA-19-5950-01 1 37356541 37356541 C G GRIK3 Missense_Mutation p.S91T 0.27 deleterious(0.02) probably_damaging(0.959) TCGA-19-5950-01 20 10286880 10286880 G A SNAP25 3'UTR 0.19 TCGA-19-5950-01 20 23066544 23066544 C T CD93 Missense_Mutation p.G96R 0.24 deleterious(0) probably_damaging(1) TCGA-19-5950-01 20 30070096 30070096 A T REM1 Missense_Mutation p.S144C 0.32 tolerated(0.07) benign(0.006) TCGA-19-5950-01 20 35690525 35690525 C A RBL1 Missense_Mutation p.A349S 0.21 tolerated(0.67) benign(0.01) TCGA-19-5950-01 20 5903378 5903378 C T CHGB Silent p.N196N 0.25 TCGA-19-5950-01 21 32253366 32253366 G A KRTAP11-1 Nonsense_Mutation p.R160* 0.16 TCGA-19-5950-01 2 180307976 180307976 G A ZNF385B 3'UTR 0.47 TCGA-19-5950-01 2 186672627 186672627 T A FSIP2 Missense_Mutation p.H6287Q 0.06 benign(0.018) TCGA-19-5950-01 2 20403674 20403674 T C SDC1 Missense_Mutation p.H176R 0.39 tolerated(0.08) benign(0.025) TCGA-19-5950-01 3 155547581 155547581 C T SLC33A1 Missense_Mutation p.G460R 0.12 deleterious(0) possibly_damaging(0.685) TCGA-19-5950-01 3 19574895 19574895 A G KCNH8 Silent p.T876T 0.39 TCGA-19-5950-01 3 56468977 56468977 C T ERC2 Missense_Mutation p.R20H 0.40 tolerated(0.05) probably_damaging(0.984) TCGA-19-5950-01 4 110661984 110661984 G A CFI 3'UTR 0.42 TCGA-19-5950-01 4 118005603 118005603 A G TRAM1L1 Missense_Mutation p.I316T 0.36 deleterious(0.04) benign(0.113) TCGA-19-5950-01 4 89061129 89061129 C T ABCG2 Missense_Mutation p.E7K 0.27 tolerated(0.39) benign(0.001) TCGA-19-5950-01 5 114916221 114916221 C A TMED7-TICAM2 3'UTR 0.44 TCGA-19-5950-01 5 123973538 123973538 A G ZNF608 3'UTR 0.35 TCGA-19-5950-01 5 13901576 13901576 C T DNAH5 Missense_Mutation p.D613N 0.51 possibly_damaging(0.831) TCGA-19-5950-01 5 23527545 23527545 G A PRDM9 Missense_Mutation p.R783Q 0.37 tolerated(0.17) unknown(0) TCGA-19-5950-01 5 49698154 49698154 C T EMB Splice_Site p.X293_splice 0.21 TCGA-19-5950-01 5 68805174 68805174 C T OCLN Missense_Mutation p.T86M 0.39 deleterious(0) probably_damaging(0.979) TCGA-19-5950-01 6 105771589 105771589 C T PREP Missense_Mutation p.R423Q 0.29 deleterious(0.03) benign(0.124) TCGA-19-5950-01 6 51491843 51491843 G A PKHD1 Missense_Mutation p.R3913C 0.15 tolerated(0.2) benign(0.001) TCGA-19-5950-01 6 75898089 75898089 C A COL12A1 Missense_Mutation p.S329I 0.32 probably_damaging(0.996) TCGA-19-5950-01 6 83841949 83841949 C T DOPEY1 Nonsense_Mutation p.Q891* 0.41 TCGA-19-5950-01 7 128585975 128585975 G A IRF5 Missense_Mutation p.R91H 0.32 deleterious(0) probably_damaging(1) TCGA-19-5950-01 7 143792799 143792799 C T OR2A12 Missense_Mutation p.A200V 0.22 tolerated(0.36) benign(0.006) TCGA-19-5950-01 7 21939697 21939697 C T DNAH11 Missense_Mutation p.P4428L 0.16 possibly_damaging(0.793) TCGA-19-5950-01 7 94879506 94879506 T C PPP1R9A Missense_Mutation p.Y779H 0.37 deleterious(0) probably_damaging(0.994) TCGA-19-5950-01 8 110424605 110424605 C T PKHD1L1 Nonsense_Mutation p.R733* 0.39 TCGA-19-5950-01 8 145541816 145541818 CTT - DGAT1 In_Frame_Del p.K231del 0.27 TCGA-19-5950-01 8 146108024 146108024 T C ZNF250 Missense_Mutation p.T187A 0.42 tolerated(0.83) benign(0.001) TCGA-19-5950-01 8 15978016 15978016 C T MSR1 Missense_Mutation p.R378H 0.21 tolerated(0.61) benign(0.009) TCGA-19-5950-01 8 25341581 25341581 C A CDCA2 Missense_Mutation p.S407Y 0.33 deleterious(0) probably_damaging(1) TCGA-19-5950-01 8 3057257 3057257 C T CSMD1 Missense_Mutation p.G1725S 0.33 probably_damaging(0.993) TCGA-19-5950-01 9 27455216 27455216 C T MOB3B Silent p.A111A 0.73 TCGA-19-5950-01 9 97329591 97329591 C T FBP2 Silent p.A222A 0.49 TCGA-19-5950-01 X 103080537 103080537 T C RAB9B Missense_Mutation p.I60V 0.33 deleterious(0.05) probably_damaging(0.995) TCGA-19-5950-01 X 117043525 117043525 A T KLHL13 Missense_Mutation p.W372R 0.18 deleterious(0) probably_damaging(0.996) TCGA-19-5950-01 X 119249373 119249373 A T RHOXF1 Splice_Site p.X133_splice 0.40 TCGA-19-5950-01 X 12903821 12903821 C T TLR7 Missense_Mutation p.T65M 0.45 tolerated(0.1) benign(0.018) TCGA-19-5950-01 X 148564169 148564169 T G IDS 3'UTR 0.30 TCGA-19-5950-01 X 149013837 149013837 C T MAGEA8 Missense_Mutation p.A264V 0.44 tolerated(1) benign(0.001) TCGA-19-5950-01 X 152937465 152937465 C T PNCK Missense_Mutation p.G178D 0.19 deleterious(0) probably_damaging(1) TCGA-19-5950-01 X 154490194 154490194 T C RAB39B Missense_Mutation p.E179G 0.17 tolerated(0.07) benign(0.097) TCGA-19-5950-01 X 2873479 2873479 C T ARSE Silent p.T95T 0.12 TCGA-19-5950-01 X 32407637 32407637 G A DMD Missense_Mutation p.S1500L 0.44 possibly_damaging(0.838) TCGA-19-5950-01 X 78216970 78216970 G A P2RY10 Missense_Mutation p.R318H 0.42 deleterious(0.05) benign(0.035) TCGA-19-5950-01 X 96139918 96139918 C T RPA4 Silent p.D203D 0.37 TCGA-19-5951-01 11 111229596 111229596 C T POU2AF1 Missense_Mutation p.V22I 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-19-5951-01 11 118183512 118183512 T C CD3E Missense_Mutation p.Y95H 0.44 tolerated(0.32) benign(0.067) TCGA-19-5951-01 11 119215663 119215663 G A MFRP Silent p.L231L 0.44 TCGA-19-5951-01 11 123909127 123909127 G A OR10G7 Silent p.N194N 0.38 TCGA-19-5951-01 11 17111388 17111388 C T PIK3C2A Missense_Mutation p.R1653Q 0.46 tolerated(0.41) probably_damaging(0.999) TCGA-19-5951-01 11 4929295 4929295 G T OR51A7 Missense_Mutation p.E232D 0.47 deleterious(0.01) possibly_damaging(0.864) TCGA-19-5951-01 11 5602633 5602633 T A OR52B6 Missense_Mutation p.F176Y 0.44 deleterious(0.01) possibly_damaging(0.581) TCGA-19-5951-01 11 66411465 66411465 C T RBM14-RBM4 Silent p.P294P 0.42 TCGA-19-5951-01 12 21036410 21036410 C T SLCO1B3 Missense_Mutation p.A519V 0.23 tolerated(0.21) benign(0.341) TCGA-19-5951-01 12 21997448 21997448 C T ABCC9 Missense_Mutation p.R1095H 0.31 deleterious(0) probably_damaging(0.986) TCGA-19-5951-01 12 27467499 27467499 A G STK38L Missense_Mutation p.I194V 0.51 tolerated(0.3) benign(0.026) TCGA-19-5951-01 12 49218455 49218455 A G CACNB3 Silent p.R137R 0.46 TCGA-19-5951-01 12 7456944 7456944 G A ACSM4 Missense_Mutation p.R6H 0.42 tolerated(0.21) benign(0.001) TCGA-19-5951-01 13 25444863 25444863 C T RNF17 Missense_Mutation p.T1478M 0.49 deleterious(0.01) probably_damaging(0.996) TCGA-19-5951-01 13 61985634 61985634 C T PCDH20 Silent p.E866E 0.47 TCGA-19-5951-01 14 20586156 20586156 G A OR4K17 Silent p.L197L 0.45 TCGA-19-5951-01 14 38724256 38724256 G T CLEC14A Missense_Mutation p.D324E 0.46 tolerated_low_confidence(0.84) benign(0.002) TCGA-19-5951-01 14 65208951 65208951 C G PLEKHG3 Missense_Mutation p.R850G 0.41 deleterious(0) possibly_damaging(0.82) TCGA-19-5951-01 14 96864516 96864516 A T AK7 Missense_Mutation p.K70N 0.41 tolerated(0.08) benign(0.013) TCGA-19-5951-01 15 101595366 101595366 G A LRRK1 Missense_Mutation p.V1424M 0.47 tolerated(0.11) probably_damaging(1) TCGA-19-5951-01 15 65110455 65110455 C - PIF1 Splice_Site p.X510_splice 0.23 TCGA-19-5951-01 16 28507939 28507939 C T APOBR Missense_Mutation p.A526V 0.27 tolerated(0.08) possibly_damaging(0.682) TCGA-19-5951-01 16 31500623 31500623 G A SLC5A2 Silent p.T543T 0.15 TCGA-19-5951-01 16 67208819 67208819 C T NOL3 Missense_Mutation p.P194L 0.06 tolerated_low_confidence(0.05) benign(0.007) TCGA-19-5951-01 16 86613224 86613224 G A FOXL1 Missense_Mutation p.A299T 0.39 tolerated(0.34) probably_damaging(0.956) TCGA-19-5951-01 17 3493599 3493599 G A SHPK Missense_Mutation p.A231V 0.05 deleterious(0.05) possibly_damaging(0.663) TCGA-19-5951-01 17 67537898 67537898 G A MAP2K6 3'UTR 0.46 TCGA-19-5951-01 19 10434234 10434234 G A RAVER1 Silent p.C272C 0.60 TCGA-19-5951-01 19 22364159 22364159 G C ZNF676 Missense_Mutation p.N120K 0.30 tolerated(1) benign(0.007) TCGA-19-5951-01 19 22605075 22605075 G T ZNF98 5'UTR 0.04 TCGA-19-5951-01 19 43441294 43441294 C T PSG7 5'UTR 0.34 TCGA-19-5951-01 19 47823567 47823567 G A C5AR1 Missense_Mutation p.R178Q 0.45 tolerated(0.22) benign(0.001) TCGA-19-5951-01 19 50918754 50918754 G A POLD1 Missense_Mutation p.R875H 0.06 deleterious(0) probably_damaging(0.993) TCGA-19-5951-01 19 6906478 6906478 C T EMR1 Silent p.P328P 0.28 TCGA-19-5951-01 1 152186950 152186950 A G HRNR Silent p.S2385S 0.10 TCGA-19-5951-01 1 152595450 152595450 C T LCE3A Missense_Mutation p.E44K 0.47 deleterious_low_confidence(0.03) unknown(0) TCGA-19-5951-01 1 186045741 186045741 A G HMCN1 Silent p.V2824V 0.32 TCGA-19-5951-01 1 21009246 21009246 G A KIF17 Missense_Mutation p.S788L 0.26 tolerated(0.08) benign(0.386) TCGA-19-5951-01 1 226127598 226127598 G A LEFTY2 Missense_Mutation p.R119W 0.58 deleterious(0) probably_damaging(0.959) TCGA-19-5951-01 1 248569915 248569915 T C OR2T1 Missense_Mutation p.F207S 0.42 tolerated(0.07) probably_damaging(0.994) TCGA-19-5951-01 1 38025070 38025070 C T DNALI1 Missense_Mutation p.R146C 0.37 deleterious(0) probably_damaging(1) TCGA-19-5951-01 1 43784978 43784978 G T TIE1 Missense_Mutation p.G999C 0.33 deleterious(0) probably_damaging(0.998) TCGA-19-5951-01 20 17929612 17929612 C T SNX5 Silent p.E280E 0.27 TCGA-19-5951-01 20 46264906 46264906 C T NCOA3 Silent p.H592H 0.39 TCGA-19-5951-01 21 41455893 41455893 C T DSCAM Silent p.T1391T 0.37 TCGA-19-5951-01 2 159215014 159215015 - T CCDC148 Frame_Shift_Ins p.L32Ifs*6 0.26 TCGA-19-5951-01 2 238275681 238275681 C T COL6A3 Missense_Mutation p.A1717T 0.39 probably_damaging(0.994) TCGA-19-5951-01 2 84517877 84517877 C T FUNDC2P2 RNA 0.64 TCGA-19-5951-01 2 90199162 90199162 A T IGKV1D-12 Missense_Mutation p.Y108F 0.86 deleterious(0) probably_damaging(0.964) TCGA-19-5951-01 3 126733439 126733439 G A PLXNA1 Missense_Mutation p.S908N 0.42 tolerated(0.86) benign(0.002) TCGA-19-5951-01 3 49689184 49689184 G A BSN Missense_Mutation p.R732Q 0.41 unknown(0) TCGA-19-5951-01 3 52475289 52475289 G A SEMA3G Silent p.R268R 0.41 TCGA-19-5951-01 4 110864421 110864421 T C EGF Silent p.N113N 0.49 TCGA-19-5951-01 4 126241369 126241369 C T FAT4 Missense_Mutation p.T1268I 0.22 benign(0.033) TCGA-19-5951-01 4 143159105 143159105 G A INPP4B Nonsense_Mutation p.R250* 0.44 TCGA-19-5951-01 4 170043337 170043337 A G SH3RF1 Silent p.A420A 0.10 TCGA-19-5951-01 4 4411320 4411320 C T NSG1 Silent p.F89F 0.45 TCGA-19-5951-01 4 69795715 69795715 C T UGT2A3 Missense_Mutation p.R467H 0.46 tolerated(0.05) benign(0.103) TCGA-19-5951-01 5 13719110 13719110 C T DNAH5 Missense_Mutation p.R4127H 0.44 possibly_damaging(0.812) TCGA-19-5951-01 5 140208958 140208958 C T PCDHA6 Missense_Mutation p.R428W 0.34 deleterious_low_confidence(0.04) possibly_damaging(0.461) TCGA-19-5951-01 5 140735359 140735359 C T PCDHGA4 Missense_Mutation p.R198C 0.47 deleterious_low_confidence(0.02) benign(0.325) TCGA-19-5951-01 5 14462975 14462975 C G TRIO Missense_Mutation p.P1870A 0.55 benign(0.002) TCGA-19-5951-01 5 149219665 149219665 C T PPARGC1B Missense_Mutation p.R894W 0.26 deleterious(0) benign(0.033) TCGA-19-5951-01 5 37816010 37816010 C T GDNF Missense_Mutation p.V144I 0.34 deleterious(0.05) probably_damaging(0.996) TCGA-19-5951-01 5 67589199 67589213 TAACCTTCAGTTCTG - PIK3R1 In_Frame_Del p.T397_V401del 0.27 TCGA-19-5951-01 6 5999377 5999377 C T NRN1 Silent p.A87A 0.50 TCGA-19-5951-01 6 7584664 7584664 T C DSP Missense_Mutation p.I2390T 0.36 benign(0.004) TCGA-19-5951-01 7 102898149 102898149 C T DPY19L2P2 RNA 0.38 TCGA-19-5951-01 7 107303838 107303838 G A SLC26A4 Missense_Mutation p.V88I 0.45 tolerated(1) benign(0.004) TCGA-19-5951-01 7 1098107 1098107 G - GPR146 Frame_Shift_Del p.H320Tfs*24 0.33 TCGA-19-5951-01 7 134874110 134874110 A G WDR91 Missense_Mutation p.V585A 0.07 tolerated(0.41) benign(0.008) TCGA-19-5951-01 7 143632553 143632553 C T OR2F2 Silent p.S76S 0.42 TCGA-19-5951-01 7 144098293 144098293 G T NOBOX Missense_Mutation p.H230Q 0.32 tolerated(0.06) benign(0.076) TCGA-19-5951-01 7 31855673 31855673 C T PDE1C Missense_Mutation p.A620T 0.41 tolerated_low_confidence(0.96) benign(0.001) TCGA-19-5951-01 7 80295787 80295787 G A CD36 Missense_Mutation p.D244N 0.48 tolerated(0.33) benign(0.29) TCGA-19-5951-01 8 124113069 124113069 A G TBC1D31 Missense_Mutation p.D285G 0.32 deleterious(0) probably_damaging(0.946) TCGA-19-5951-01 8 131896832 131896832 T G ADCY8 Missense_Mutation p.K696T 0.45 tolerated(0.09) benign(0.176) TCGA-19-5951-01 8 24167473 24167473 A - ADAM28 Frame_Shift_Del p.N75Tfs*53 0.36 TCGA-19-5951-01 8 25246735 25246735 G A DOCK5 Silent p.S1420S 0.50 TCGA-19-5951-01 8 37704528 37704528 C T BRF2 Missense_Mutation p.R127Q 0.13 deleterious(0) probably_damaging(0.999) TCGA-19-5951-01 8 55371633 55371633 C T SOX17 Missense_Mutation p.A108V 0.31 deleterious(0) probably_damaging(0.989) TCGA-19-5951-01 8 9760928 9760928 T A LINC00599 5'Flank 0.34 TCGA-19-5951-01 9 101810265 101810265 C A COL15A1 Missense_Mutation p.P926T 0.58 tolerated(0.19) benign(0.085) TCGA-19-5951-01 9 139726289 139726289 G A RABL6 Missense_Mutation p.R192H 0.36 deleterious(0) benign(0.336) TCGA-19-5951-01 9 34257897 34257897 G A KIF24 Nonsense_Mutation p.R570* 0.92 TCGA-19-5951-01 X 112025789 112025789 C A AMOT Missense_Mutation p.R740L 0.42 unknown(0) TCGA-19-5951-01 X 119410875 119410875 G T TMEM255A Nonsense_Mutation p.Y204* 0.46 TCGA-19-5951-01 X 153666947 153666947 G A GDI1 Missense_Mutation p.E42K 0.47 deleterious(0) benign(0.09) TCGA-19-5951-01 X 2931164 2931164 G A ARSH Silent p.T97T 0.38 TCGA-19-5951-01 X 47496310 47496310 C T ELK1 Missense_Mutation p.S402N 0.50 tolerated(0.43) benign(0.006) TCGA-19-5951-01 X 47842806 47842806 T C ZNF182 Silent p.L26L 0.48 TCGA-19-5951-01 X 48545194 48545194 T G WAS Missense_Mutation p.L195R 0.39 deleterious(0.02) possibly_damaging(0.878) TCGA-19-5951-01 X 50377938 50377938 C T SHROOM4 Missense_Mutation p.V379M 0.41 tolerated(0.31) benign(0.003) TCGA-19-5951-01 X 71425657 71425657 T C ERCC6L Missense_Mutation p.N987S 0.43 tolerated(0.13) benign(0.011) TCGA-19-5952-01 10 104171572 104171572 A G PSD Missense_Mutation p.F612L 0.50 deleterious(0.01) probably_damaging(0.994) TCGA-19-5952-01 10 26849669 26849672 CTCT - APBB1IP Frame_Shift_Del p.L423Mfs*232 0.50 TCGA-19-5952-01 10 46965845 46965845 G T SYT15 Missense_Mutation p.S231Y 0.11 deleterious(0.01) probably_damaging(0.987) TCGA-19-5952-01 10 89692911 89692911 G A PTEN Missense_Mutation p.G132D 0.50 deleterious(0.03) probably_damaging(0.96) TCGA-19-5952-01 11 102665949 102665949 A T MMP1 Missense_Mutation p.D285E 0.34 deleterious(0) probably_damaging(0.956) TCGA-19-5952-01 11 117329509 117329509 C T DSCAML1 Missense_Mutation p.V1237I 0.16 tolerated(0.07) probably_damaging(0.984) TCGA-19-5952-01 11 56086192 56086192 C T OR8K3 Missense_Mutation p.S137L 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.886) TCGA-19-5952-01 11 58170525 58170525 G A OR5B3 Missense_Mutation p.R120C 0.39 deleterious_low_confidence(0.02) benign(0.308) TCGA-19-5952-01 11 72114088 72114088 G C CLPB Nonsense_Mutation p.S155* 0.28 TCGA-19-5952-01 12 129559351 129559351 G A TMEM132D Missense_Mutation p.T790M 0.34 tolerated(0.24) possibly_damaging(0.62) TCGA-19-5952-01 12 13215874 13215874 C G KIAA1467 Missense_Mutation p.R273G 0.04 tolerated(0.25) benign(0.027) TCGA-19-5952-01 12 18435551 18435551 A G PIK3C2G Missense_Mutation p.N179S 0.41 tolerated_low_confidence(0.2) benign(0.019) TCGA-19-5952-01 14 106174940 106174940 G A IGHA1 Silent p.N21N 0.26 TCGA-19-5952-01 14 24787905 24787905 G A ADCY4 Silent p.N1012N 0.34 TCGA-19-5952-01 14 94849557 94849557 C T SERPINA1 Silent p.S6S 0.30 TCGA-19-5952-01 15 34064164 34064164 C T RYR3 Nonsense_Mutation p.R2954* 0.36 TCGA-19-5952-01 17 37791907 37791907 C T PPP1R1B Missense_Mutation p.R165C 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-19-5952-01 17 59952385 59952385 G A INTS2 Missense_Mutation p.T832M 0.32 deleterious(0) probably_damaging(0.997) TCGA-19-5952-01 17 61271350 61271350 A G TANC2 Splice_Site p.X71_splice 0.10 TCGA-19-5952-01 17 79864762 79864762 G A PCYT2 Missense_Mutation p.R202W 0.29 deleterious(0) possibly_damaging(0.54) TCGA-19-5952-01 17 8243551 8243551 G A ODF4 Missense_Mutation p.R61H 0.38 tolerated(0.34) possibly_damaging(0.495) TCGA-19-5952-01 18 28605880 28605880 A G DSC3 Missense_Mutation p.V159A 0.32 deleterious(0) probably_damaging(0.929) TCGA-19-5952-01 18 28991295 28991295 G A DSG4 Missense_Mutation p.A766T 0.35 tolerated(0.54) benign(0.016) TCGA-19-5952-01 19 23927954 23927954 C T ZNF681 Missense_Mutation p.C133Y 0.31 tolerated(0.07) possibly_damaging(0.831) TCGA-19-5952-01 19 2732715 2732715 C T SLC39A3 3'UTR 0.56 TCGA-19-5952-01 19 36293096 36293096 G A PRODH2 Silent p.L475L 0.28 TCGA-19-5952-01 19 45153193 45153193 C T PVR Silent p.H180H 0.39 TCGA-19-5952-01 19 54567025 54567025 C T VSTM1 Missense_Mutation p.A3T 0.34 tolerated_low_confidence(1) benign(0) TCGA-19-5952-01 19 618520 618522 GGA - POLRMT In_Frame_Del p.S1130del 0.24 TCGA-19-5952-01 1 236700824 236700824 G A LGALS8 Missense_Mutation p.D25N 0.33 tolerated(0.29) benign(0.131) TCGA-19-5952-01 1 237167465 237167465 C T MT1HL1 3'UTR 0.26 TCGA-19-5952-01 20 61297841 61297841 C T SLCO4A1 Silent p.T462T 0.30 TCGA-19-5952-01 22 30660354 30660354 G A OSM Missense_Mutation p.R93W 0.41 tolerated(0.12) benign(0.02) TCGA-19-5952-01 2 128408657 128408657 C T GPR17 Silent p.Y144Y 0.34 TCGA-19-5952-01 2 179548796 179548796 C T TTN Silent p.P10912P 0.25 TCGA-19-5952-01 2 220379838 220379838 C T ASIC4 Missense_Mutation p.A258V 0.43 tolerated(0.53) possibly_damaging(0.87) TCGA-19-5952-01 3 158378683 158378683 C T GFM1 Silent p.A414A 0.30 TCGA-19-5952-01 3 39307959 39307959 G A CX3CR1 Silent p.Y46Y 0.34 TCGA-19-5952-01 3 52292683 52292683 C T WDR82 Missense_Mutation p.G261S 0.33 tolerated(0.08) possibly_damaging(0.841) TCGA-19-5952-01 4 155528019 155528019 C T FGG Missense_Mutation p.D323N 0.31 tolerated(0.08) probably_damaging(0.95) TCGA-19-5952-01 4 74608210 74608210 A G IL8 3'UTR 0.29 TCGA-19-5952-01 5 135692954 135692954 G A TRPC7 Missense_Mutation p.T41M 0.36 deleterious(0) possibly_damaging(0.714) TCGA-19-5952-01 5 140242597 140242597 G A AC005609.1 Missense_Mutation p.R127C 0.26 deleterious_low_confidence(0.03) possibly_damaging(0.835) TCGA-19-5952-01 5 140754770 140754770 C T PCDHGA6 Nonsense_Mutation p.R374* 0.32 TCGA-19-5952-01 5 147807296 147807296 C T FBXO38 Intron 0.18 TCGA-19-5952-01 5 148442617 148442617 T C SH3TC2 5'UTR 0.40 TCGA-19-5952-01 5 1880903 1880903 G A IRX4 Silent p.L115L 0.40 TCGA-19-5952-01 6 136554632 136554632 G A MTFR2 Missense_Mutation p.P292L 0.62 deleterious(0) possibly_damaging(0.823) TCGA-19-5952-01 7 138593736 138593736 C A KIAA1549 Splice_Site p.X1092_splice 0.28 TCGA-19-5952-01 7 151261177 151261177 A T PRKAG2 Missense_Mutation p.I524K 0.24 deleterious(0) probably_damaging(0.99) TCGA-19-5952-01 7 3991529 3991529 C T SDK1 Missense_Mutation p.A376V 0.27 deleterious(0.03) benign(0.158) TCGA-19-5952-01 9 131669841 131669841 C T LRRC8A Missense_Mutation p.T133M 0.18 deleterious(0) probably_damaging(0.998) TCGA-19-5952-01 9 85913683 85913683 C T FRMD3 Silent p.R350R 0.26 TCGA-19-5952-01 X 19002071 19002071 G A PHKA2 5'UTR 0.17 TCGA-19-5952-01 X 26213206 26213206 T A MAGEB6 3'UTR 0.57 TCGA-19-5953-01 10 89692893 89692893 C T PTEN Missense_Mutation p.A126V 0.28 deleterious(0.03) probably_damaging(0.965) TCGA-19-5953-01 11 113286210 113286210 C T DRD2 Missense_Mutation p.R219H 0.22 deleterious(0) probably_damaging(0.996) TCGA-19-5953-01 11 119209946 119209946 A G C1QTNF5 3'UTR 0.19 TCGA-19-5953-01 11 14839801 14839801 G A PDE3B Missense_Mutation p.R532Q 0.15 tolerated(0.31) benign(0.048) TCGA-19-5953-01 11 56020021 56020021 C T OR5T3 Silent p.L116L 0.28 TCGA-19-5953-01 11 70319235 70319235 C T SHANK2 Silent p.S1764S 0.23 TCGA-19-5953-01 11 74876887 74876887 G A SLCO2B1 Missense_Mutation p.R114Q 0.27 deleterious(0) probably_damaging(0.953) TCGA-19-5953-01 12 105514968 105514968 G T KIAA1033 Missense_Mutation p.W217C 0.18 deleterious(0) probably_damaging(0.998) TCGA-19-5953-01 12 108603905 108603905 C A WSCD2 Missense_Mutation p.L169M 0.21 tolerated(0.23) benign(0.26) TCGA-19-5953-01 12 129563144 129563144 G A TMEM132D Missense_Mutation p.P684S 0.25 tolerated(0.25) benign(0.09) TCGA-19-5953-01 12 133306704 133306704 C G ANKLE2 Missense_Mutation p.E682Q 0.26 tolerated(0.32) benign(0.008) TCGA-19-5953-01 12 15070213 15070213 C T ERP27 Missense_Mutation p.V159I 0.23 tolerated(0.19) benign(0.003) TCGA-19-5953-01 12 69645041 69645041 G C CPSF6 Missense_Mutation p.G65R 0.43 tolerated(0.18) unknown(0) TCGA-19-5953-01 12 7842975 7842975 G A GDF3 Silent p.F198F 0.19 TCGA-19-5953-01 13 26621011 26621011 C T SHISA2 Silent p.S176S 0.16 TCGA-19-5953-01 14 21469493 21469493 C T SLC39A2 Silent p.L229L 0.28 TCGA-19-5953-01 15 24921103 24921103 G A NPAP1 Missense_Mutation p.R30Q 0.50 tolerated_low_confidence(0.15) benign(0.417) TCGA-19-5953-01 15 40710555 40710555 C T IVD 3'UTR 0.31 TCGA-19-5953-01 15 78917630 78917630 C T CHRNB4 Missense_Mutation p.V448I 0.23 tolerated(0.32) benign(0.009) TCGA-19-5953-01 15 78922161 78922161 G A CHRNB4 Silent p.F162F 0.35 TCGA-19-5953-01 16 31435264 31435264 C T ITGAD Silent p.F1048F 0.21 TCGA-19-5953-01 16 4833669 4833669 C T SEPT12 Missense_Mutation p.R204Q 0.32 deleterious(0.03) probably_damaging(1) TCGA-19-5953-01 16 49407930 49407930 G A C16orf78 Missense_Mutation p.R27H 0.04 deleterious(0) possibly_damaging(0.708) TCGA-19-5953-01 16 90161048 90161048 G A TUBB8P7 Intron 0.08 TCGA-19-5953-01 17 29588751 29588751 C T NF1 Nonsense_Mutation p.R1534* 0.29 TCGA-19-5953-01 17 56809897 56809897 C G RAD51C Missense_Mutation p.Q340E 0.07 tolerated(0.61) benign(0.005) TCGA-19-5953-01 17 79412126 79412126 C T RP11-1055B8.7 Silent p.L919L 0.18 TCGA-19-5953-01 17 9801385 9801385 G A RCVRN 3'UTR 0.23 TCGA-19-5953-01 18 19358097 19358097 G A MIB1 Missense_Mutation p.G224S 0.22 tolerated(0.2) benign(0.335) TCGA-19-5953-01 18 29039054 29039054 C T DSG3 Missense_Mutation p.T144M 0.21 deleterious(0.02) probably_damaging(0.998) TCGA-19-5953-01 18 7011448 7011448 G A LAMA1 Missense_Mutation p.R1180C 0.13 deleterious(0.01) possibly_damaging(0.886) TCGA-19-5953-01 19 35801030 35801030 C T MAG Silent p.G495G 0.12 TCGA-19-5953-01 1 120056674 120056674 C T HSD3B1 Silent p.N176N 0.37 TCGA-19-5953-01 1 144859794 144859794 C G PDE4DIP Missense_Mutation p.S2097T 0.07 tolerated(0.31) benign(0.015) TCGA-19-5953-01 1 144859988 144859988 C G PDE4DIP Silent p.L2032L 0.12 TCGA-19-5953-01 1 150530495 150530495 G A ADAMTSL4 Missense_Mutation p.R751Q 0.22 deleterious(0) probably_damaging(1) TCGA-19-5953-01 1 161518335 161518335 G A FCGR3A Silent p.S101S 0.15 TCGA-19-5953-01 1 17708559 17708559 G A PADI6 RNA 0.16 TCGA-19-5953-01 1 178822880 178822880 G A ANGPTL1 Missense_Mutation p.S289L 0.26 tolerated(0.28) benign(0.064) TCGA-19-5953-01 1 180914469 180914469 C T KIAA1614 Silent p.L1106L 0.19 TCGA-19-5953-01 1 209796522 209796522 G T LAMB3 Silent p.L787L 0.26 TCGA-19-5953-01 1 248039229 248039229 C T TRIM58 Missense_Mutation p.A300V 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5953-01 1 32050587 32050587 C T TINAGL1 Silent p.G269G 0.23 TCGA-19-5953-01 1 67301382 67301382 C T WDR78 Missense_Mutation p.V554I 0.25 deleterious(0.02) benign(0.173) TCGA-19-5953-01 1 91182597 91182597 A G BARHL2 Silent p.C52C 0.06 TCGA-19-5953-01 21 47423347 47423347 G A COL6A1 Missense_Mutation p.G836D 0.07 tolerated(0.05) possibly_damaging(0.851) TCGA-19-5953-01 22 32628993 32628993 T G SLC5A4 Missense_Mutation p.K305T 0.26 deleterious(0) probably_damaging(0.967) TCGA-19-5953-01 2 103141556 103141556 G A SLC9A4 Missense_Mutation p.R631H 0.28 deleterious(0.03) benign(0.038) TCGA-19-5953-01 2 186671460 186671460 A G FSIP2 Silent p.Q5898Q 0.25 TCGA-19-5953-01 3 127981028 127981028 C T EEFSEC Silent p.P194P 0.26 TCGA-19-5953-01 3 37092205 37092205 T C MLH1 3'UTR 0.32 TCGA-19-5953-01 4 128564761 128564761 C G INTU Missense_Mutation p.L78V 0.24 tolerated(0.16) benign(0.031) TCGA-19-5953-01 5 140725076 140725076 C T PCDHGA3 Silent p.T492T 0.13 TCGA-19-5953-01 5 140755737 140755737 C T PCDHGA6 Missense_Mutation p.A696V 0.18 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-19-5953-01 5 150942915 150942915 A G FAT2 Missense_Mutation p.M1182T 0.20 benign(0.007) TCGA-19-5953-01 5 60060144 60060144 G A ELOVL7 Missense_Mutation p.R137C 0.22 deleterious(0) probably_damaging(1) TCGA-19-5953-01 6 110768146 110768146 A - SLC22A16 Frame_Shift_Del p.L194Cfs*4 0.24 TCGA-19-5953-01 6 46826522 46826522 A T GPR116 Missense_Mutation p.S1040T 0.35 tolerated(0.57) possibly_damaging(0.759) TCGA-19-5953-01 6 96054014 96054014 G A MANEA Silent p.R374R 0.27 TCGA-19-5953-01 7 100677675 100677675 C T MUC17 Missense_Mutation p.T993M 0.19 probably_damaging(0.993) TCGA-19-5953-01 7 143772171 143772171 C T OR2A25 Silent p.L287L 0.18 TCGA-19-5953-01 7 82580167 82580167 C T PCLO Missense_Mutation p.R3246Q 0.12 unknown(0) TCGA-19-5953-01 7 94039107 94039107 G A COL1A2 Missense_Mutation p.G337S 0.17 unknown(0) TCGA-19-5953-01 7 99753440 99753440 G A C7orf43 Silent p.L417L 0.23 TCGA-19-5953-01 7 99998739 99998739 C T ZCWPW1 Silent p.E615E 0.27 TCGA-19-5953-01 8 121021282 121021282 G A DEPTOR Silent p.A337A 0.10 TCGA-19-5953-01 8 144808270 144808270 G A FAM83H Missense_Mutation p.R1121C 0.23 deleterious(0) possibly_damaging(0.724) TCGA-19-5953-01 8 29207815 29207815 G A DUSP4 5'UTR 0.29 TCGA-19-5953-01 X 34150044 34150044 C T FAM47A Missense_Mutation p.V118I 0.55 deleterious(0.04) possibly_damaging(0.522) TCGA-19-5953-01 X 84526085 84526085 G A ZNF711 Missense_Mutation p.G513S 0.45 tolerated(0.08) probably_damaging(1) TCGA-19-5954-01 10 129906302 129906302 G A MKI67 Nonsense_Mutation p.R1268* 0.57 TCGA-19-5954-01 10 95148849 95148849 A G MYOF Missense_Mutation p.Y507H 0.62 deleterious(0) probably_damaging(0.997) TCGA-19-5954-01 10 99126522 99126522 C A RRP12 Missense_Mutation p.E1064D 0.69 tolerated(0.54) benign(0.001) TCGA-19-5954-01 11 117860220 117860220 C T IL10RA Silent p.T84T 0.35 TCGA-19-5954-01 11 118134970 118134971 AG - MPZL2 5'UTR 0.53 TCGA-19-5954-01 11 129999030 129999030 G A APLP2 Missense_Mutation p.A462T 0.36 deleterious(0) probably_damaging(0.999) TCGA-19-5954-01 11 2435324 2435324 G A TRPM5 Silent p.D619D 0.38 TCGA-19-5954-01 11 46750326 46750326 C G F2 Missense_Mutation p.P471A 0.39 deleterious(0.01) probably_damaging(0.984) TCGA-19-5954-01 11 58919918 58919918 A G FAM111A Silent p.L259L 0.43 TCGA-19-5954-01 12 11286246 11286246 A G TAS2R30 Missense_Mutation p.C200R 0.04 tolerated(0.18) possibly_damaging(0.894) TCGA-19-5954-01 13 100425088 100425088 C G CLYBL Missense_Mutation p.L25V 0.34 tolerated_low_confidence(0.06) benign(0) TCGA-19-5954-01 13 24515495 24515495 A G ANKRD20A19P RNA 0.41 TCGA-19-5954-01 13 28519355 28519355 G A ATP5EP2 5'UTR 0.35 TCGA-19-5954-01 14 106641590 106641590 G A IGHV1-18 Silent p.D108D 0.40 TCGA-19-5954-01 14 74534253 74534253 A G ALDH6A1 Missense_Mutation p.V291A 0.37 tolerated(0.16) possibly_damaging(0.876) TCGA-19-5954-01 14 75078642 75078642 C T LTBP2 Silent p.R2R 0.33 TCGA-19-5954-01 14 91755553 91755553 G T CCDC88C Missense_Mutation p.A1446E 0.26 tolerated(0.64) benign(0.051) TCGA-19-5954-01 14 91755554 91755554 C T CCDC88C Missense_Mutation p.A1446T 0.26 tolerated(0.59) benign(0.002) TCGA-19-5954-01 15 26812728 26812728 C T GABRB3 Missense_Mutation p.G279R 0.43 deleterious(0) probably_damaging(1) TCGA-19-5954-01 15 58306465 58306465 G A ALDH1A2 Silent p.N44N 0.36 TCGA-19-5954-01 15 90775506 90775506 G A CIB1 Missense_Mutation p.S47L 0.38 tolerated(0.25) benign(0.001) TCGA-19-5954-01 16 11444739 11444739 G A RMI2 3'UTR 0.33 TCGA-19-5954-01 16 18795902 18795903 - A RPS15A Intron 0.47 TCGA-19-5954-01 16 1962053 1962053 G A HS3ST6 Silent p.S158S 0.36 TCGA-19-5954-01 16 30124034 30124036 TCA - GDPD3 In_Frame_Del p.D87del 0.32 TCGA-19-5954-01 16 53308187 53308187 A T CHD9 Missense_Mutation p.Q1647L 0.19 benign(0.312) TCGA-19-5954-01 17 17721038 17721038 G T SREBF1 Missense_Mutation p.P489H 0.44 deleterious(0) probably_damaging(0.999) TCGA-19-5954-01 17 63221294 63221294 G A RGS9 Missense_Mutation p.V528M 0.38 tolerated_low_confidence(0.12) benign(0.062) TCGA-19-5954-01 17 8702398 8702398 C A MFSD6L Missense_Mutation p.G14V 0.29 tolerated(0.18) benign(0.05) TCGA-19-5954-01 18 61570323 61570323 G A SERPINB2 Silent p.S344S 0.45 TCGA-19-5954-01 18 77895050 77895050 G A ADNP2 Missense_Mutation p.G585D 0.40 deleterious(0.04) possibly_damaging(0.818) TCGA-19-5954-01 19 14150321 14150321 C T IL27RA Missense_Mutation p.R74C 0.35 deleterious(0) possibly_damaging(0.613) TCGA-19-5954-01 19 17017818 17017818 C T CPAMD8 Missense_Mutation p.R1371H 0.40 tolerated(0.27) benign(0.008) TCGA-19-5954-01 19 17411828 17411828 G A ABHD8 Missense_Mutation p.R200C 0.31 deleterious(0.01) possibly_damaging(0.849) TCGA-19-5954-01 19 40197279 40197279 G A LGALS14 Missense_Mutation p.V49M 0.39 tolerated(0.07) probably_damaging(0.937) TCGA-19-5954-01 19 51452018 51452018 T C KLK5 Missense_Mutation p.K202E 0.45 tolerated(0.18) benign(0.013) TCGA-19-5954-01 19 58565136 58565136 G A ZSCAN1 Missense_Mutation p.R315H 0.41 tolerated(0.17) possibly_damaging(0.651) TCGA-19-5954-01 19 6828672 6828672 G A VAV1 Missense_Mutation p.E378K 0.36 deleterious(0) probably_damaging(0.997) TCGA-19-5954-01 19 9014654 9014654 C T MUC16 Missense_Mutation p.R12774H 0.37 benign(0.233) TCGA-19-5954-01 1 120050047 120050047 C T HSD3B1 5'UTR 0.50 TCGA-19-5954-01 1 152276552 152276552 C T FLG Missense_Mutation p.E3604K 0.14 unknown(0) TCGA-19-5954-01 1 152280440 152280440 C T FLG Missense_Mutation p.E2308K 0.23 benign(0.292) TCGA-19-5954-01 1 16095074 16095074 G A FBLIM1 Missense_Mutation p.E164K 0.36 tolerated(0.23) possibly_damaging(0.801) TCGA-19-5954-01 1 177936906 177936906 G T SEC16B Missense_Mutation p.H71N 0.35 tolerated(0.06) benign(0.03) TCGA-19-5954-01 1 1961508 1961508 C T GABRD Silent p.R382R 0.39 TCGA-19-5954-01 1 196758870 196758870 C A CFHR3 Intron 0.67 TCGA-19-5954-01 1 209791966 209791966 C T LAMB3 Missense_Mutation p.E914K 0.23 deleterious(0.02) benign(0.082) TCGA-19-5954-01 1 214819178 214819178 G A CENPF Missense_Mutation p.V2089I 0.45 benign(0.006) TCGA-19-5954-01 1 28208484 28208484 C T THEMIS2 Missense_Mutation p.R217C 0.28 deleterious(0) probably_damaging(1) TCGA-19-5954-01 1 6704720 6704720 C T DNAJC11 Missense_Mutation p.G332E 0.26 deleterious(0) benign(0.173) TCGA-19-5954-01 1 7910966 7910966 C T UTS2 Silent p.A55A 0.35 TCGA-19-5954-01 1 7998781 7998781 C A TNFRSF9 Missense_Mutation p.G70C 0.33 deleterious(0) probably_damaging(1) TCGA-19-5954-01 20 39990117 39990119 CCT - EMILIN3 In_Frame_Del p.E697del 0.29 TCGA-19-5954-01 21 39795376 39795376 G A ERG Missense_Mutation p.P122L 0.42 deleterious(0) probably_damaging(0.967) TCGA-19-5954-01 21 46689872 46689872 G A POFUT2 Silent p.F298F 0.52 TCGA-19-5954-01 2 132238151 132238151 C T TUBA3D Silent p.C295C 0.58 TCGA-19-5954-01 2 176988850 176988850 C A HOXD9 Missense_Mutation p.R336S 0.41 deleterious(0) probably_damaging(1) TCGA-19-5954-01 2 201478599 201478599 G A AOX1 Silent p.A507A 0.39 TCGA-19-5954-01 2 25141642 25141642 C T ADCY3 Missense_Mutation p.R72K 0.11 tolerated(0.29) possibly_damaging(0.656) TCGA-19-5954-01 3 105238918 105238918 A T ALCAM Silent p.G27G 0.44 TCGA-19-5954-01 3 14552933 14552933 C T GRIP2 RNA 0.34 TCGA-19-5954-01 3 165503999 165503999 T C BCHE Missense_Mutation p.T540A 0.39 tolerated(0.73) benign(0.005) TCGA-19-5954-01 3 178916623 178916623 C T PIK3CA Nonsense_Mutation p.R4* 0.44 TCGA-19-5954-01 3 178916945 178916945 A G PIK3CA Missense_Mutation p.K111R 0.28 deleterious(0.01) probably_damaging(0.989) TCGA-19-5954-01 3 32915463 32915463 C T TRIM71 Nonsense_Mutation p.R336* 0.24 TCGA-19-5954-01 3 97686291 97686291 G T MINA Silent p.I49I 0.31 TCGA-19-5954-01 4 10099515 10099515 C T WDR1 Silent p.K126K 0.36 TCGA-19-5954-01 4 247892 247892 G A ZNF876P RNA 0.69 TCGA-19-5954-01 4 76539498 76539498 C G CDKL2 Missense_Mutation p.V102L 0.37 tolerated(0.55) benign(0) TCGA-19-5954-01 5 121487550 121487550 C A ZNF474 5'UTR 0.22 TCGA-19-5954-01 5 140222810 140222810 G A PCDHA8 Missense_Mutation p.R635H 0.39 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-19-5954-01 5 154395782 154395782 G A KIF4B Missense_Mutation p.R788Q 0.38 tolerated(0.08) benign(0.018) TCGA-19-5954-01 5 41313586 41313586 C T PLCXD3 3'UTR 0.41 TCGA-19-5954-01 5 63256355 63256355 C T HTR1A Missense_Mutation p.V398I 0.40 tolerated(1) benign(0.007) TCGA-19-5954-01 5 90049615 90049615 G A GPR98 Silent p.A3782A 0.47 TCGA-19-5954-01 6 100062503 100062503 C T PRDM13 Silent p.D664D 0.42 TCGA-19-5954-01 6 116720360 116720360 G A DSE Splice_Site 0.46 TCGA-19-5954-01 6 121427228 121427228 T A TBC1D32 Nonsense_Mutation p.K1136* 0.39 TCGA-19-5954-01 6 152660497 152660497 T C SYNE1 Missense_Mutation p.K4077R 0.34 possibly_damaging(0.492) TCGA-19-5954-01 6 84056027 84056027 A G ME1 Silent p.R155R 0.32 TCGA-19-5954-01 7 100685627 100685627 A G MUC17 Missense_Mutation p.T3644A 0.28 benign(0.217) TCGA-19-5954-01 7 121651361 121651361 A G PTPRZ1 Missense_Mutation p.N754S 0.24 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-19-5954-01 7 141833950 141833950 G A RP11-1220K2.2 Missense_Mutation p.E249K 0.40 tolerated(0.56) benign(0.002) TCGA-19-5954-01 7 142749543 142749543 G A OR6V1 Missense_Mutation p.A36T 0.29 tolerated(1) benign(0.051) TCGA-19-5954-01 7 17861198 17861198 C T SNX13 Silent p.E593E 0.25 TCGA-19-5954-01 7 29407583 29407583 A G CHN2 Missense_Mutation p.R42G 0.19 tolerated(0.06) benign(0.098) TCGA-19-5954-01 7 30088881 30088882 - A PLEKHA8 Frame_Shift_Ins p.T161Nfs*20 0.23 TCGA-19-5954-01 7 40117639 40117639 C T CDK13 Missense_Mutation p.P939L 0.29 deleterious(0) probably_damaging(0.999) TCGA-19-5954-01 7 87148696 87148696 C T ABCB1 Missense_Mutation p.R958Q 0.32 deleterious(0.05) benign(0.041) TCGA-19-5954-01 7 92761184 92761184 T C SAMD9L Silent p.L1367L 0.23 TCGA-19-5954-01 8 101149805 101149805 T C FBXO43 Silent p.K554K 0.39 TCGA-19-5954-01 8 39836613 39836613 A T IDO2 Nonsense_Mutation p.K88* 0.27 TCGA-19-5954-01 8 90996835 90996835 G A NBN 5'UTR 0.18 TCGA-19-5954-01 9 77436668 77436668 G T TRPM6 Missense_Mutation p.D309E 0.43 tolerated(0.51) benign(0.016) TCGA-19-5954-01 X 100382542 100382542 A G CENPI Missense_Mutation p.E321G 0.40 tolerated(0.11) benign(0.015) TCGA-19-5954-01 X 101858012 101858012 C - ARMCX5 Frame_Shift_Del p.V316Lfs*6 0.28 TCGA-19-5954-01 X 101858029 101858029 G C ARMCX5 Missense_Mutation p.K320N 0.34 tolerated(0.06) probably_damaging(0.999) TCGA-19-5954-01 X 142717642 142717642 C T SLITRK4 Missense_Mutation p.R428H 0.29 deleterious(0) probably_damaging(0.938) TCGA-19-5954-01 X 150828252 150828252 C A PASD1 Missense_Mutation p.S262Y 0.38 deleterious(0.01) probably_damaging(0.983) TCGA-19-5954-01 X 152915703 152915703 G A DUSP9 Silent p.P366P 0.44 TCGA-19-5954-01 X 27999353 27999353 C T DCAF8L1 Silent p.T33T 0.36 TCGA-19-5954-01 X 3242355 3242355 G T MXRA5 Silent p.T457T 0.42 TCGA-19-5954-01 X 41555890 41555890 G A GPR34 Missense_Mutation p.R335H 0.31 deleterious(0) probably_damaging(0.997) TCGA-19-5954-01 X 69420246 69420246 T A DGAT2L6 Missense_Mutation p.F137I 0.43 tolerated(0.08) benign(0.047) TCGA-19-5954-01 X 90691741 90691741 G T PABPC5 3'UTR 0.35 TCGA-19-5955-01 10 26315330 26315330 G - MYO3A Frame_Shift_Del p.K274Nfs*22 0.25 TCGA-19-5955-01 10 89725130 89725130 C - PTEN Frame_Shift_Del p.D371Efs*45 0.22 TCGA-19-5955-01 10 92508680 92508680 C T HTR7 Missense_Mutation p.R404Q 0.22 tolerated(0.05) benign(0.312) TCGA-19-5955-01 11 108199882 108199882 G - ATM Frame_Shift_Del p.E2409Nfs*9 0.12 TCGA-19-5955-01 11 59245250 59245250 G A OR4D10 Silent p.S116S 0.17 TCGA-19-5955-01 11 59814607 59814607 T - OOSP2 3'UTR 0.11 TCGA-19-5955-01 12 121444130 121444130 C T C12orf43 Missense_Mutation p.D119N 0.12 deleterious(0.01) possibly_damaging(0.848) TCGA-19-5955-01 12 22354787 22354787 C T ST8SIA1 Missense_Mutation p.R257H 0.17 tolerated(0.16) benign(0.083) TCGA-19-5955-01 12 66765507 66765507 C T GRIP1 Silent p.E941E 0.20 TCGA-19-5955-01 13 25419167 25419167 T A RNF17 Missense_Mutation p.N1017K 0.20 tolerated(0.08) probably_damaging(0.966) TCGA-19-5955-01 14 26941562 26941562 A C NOVA1 Silent p.S161S 0.14 TCGA-19-5955-01 14 60212931 60212931 C G RTN1 Missense_Mutation p.M170I 0.08 deleterious(0.04) benign(0.346) TCGA-19-5955-01 14 60213169 60213169 T C RTN1 Missense_Mutation p.H91R 0.22 tolerated(0.27) benign(0) TCGA-19-5955-01 14 64430685 64430685 T C SYNE2 Silent p.D319D 0.16 TCGA-19-5955-01 15 56132880 56132880 G A NEDD4 Silent p.N975N 0.08 TCGA-19-5955-01 16 1962204 1962204 C A HS3ST6 Missense_Mutation p.S108I 0.36 deleterious(0.04) probably_damaging(0.938) TCGA-19-5955-01 17 21826190 21826190 G A FAM27L RNA 0.05 TCGA-19-5955-01 17 35633950 35633950 A G ACACA Silent p.L260L 0.17 TCGA-19-5955-01 17 39240673 39240673 C T KRTAP4-7 Missense_Mutation p.T72M 0.13 deleterious(0.01) unknown(0) TCGA-19-5955-01 17 48263379 48263379 G A COL1A1 Silent p.F1336F 0.15 TCGA-19-5955-01 17 48757178 48757178 G A ABCC3 Nonsense_Mutation p.W1242* 0.18 TCGA-19-5955-01 17 70120351 70120351 C T SOX9 Silent p.Y451Y 0.20 TCGA-19-5955-01 17 75398771 75398771 C T SEPT9 Missense_Mutation p.P236L 0.22 tolerated(0.34) benign(0.002) TCGA-19-5955-01 17 78083809 78083809 G A GAA Silent p.R464R 0.12 TCGA-19-5955-01 17 7842828 7842828 T C CNTROB Intron 0.10 TCGA-19-5955-01 18 12274238 12274238 C T CIDEA Silent p.Y159Y 0.16 TCGA-19-5955-01 18 2700844 2700844 A C SMCHD1 Missense_Mutation p.K525N 0.13 deleterious(0) probably_damaging(0.997) TCGA-19-5955-01 19 39734655 39734655 C T IFNL3 Missense_Mutation p.R134Q 0.08 tolerated(1) benign(0.002) TCGA-19-5955-01 19 45853908 45853908 C T KLC3 Missense_Mutation p.R428C 0.18 deleterious(0) possibly_damaging(0.689) TCGA-19-5955-01 19 48845929 48845929 C T TMEM143 Missense_Mutation p.R278H 0.16 deleterious(0.01) possibly_damaging(0.773) TCGA-19-5955-01 19 55828201 55828201 G A TMEM150B Missense_Mutation p.P153L 0.22 tolerated(0.11) benign(0.075) TCGA-19-5955-01 19 9058146 9058146 T C MUC16 Missense_Mutation p.K9767R 0.13 unknown(0) TCGA-19-5955-01 19 9084687 9084687 G A MUC16 Silent p.T2376T 0.07 TCGA-19-5955-01 1 109270578 109270578 G A FNDC7 Silent p.A420A 0.19 TCGA-19-5955-01 1 11897139 11897139 C T CLCN6 Silent p.N688N 0.10 TCGA-19-5955-01 1 152276186 152276186 G A FLG Missense_Mutation p.R3726W 0.17 unknown(0) TCGA-19-5955-01 1 163306614 163306614 G A NUF2 Silent p.T137T 0.19 TCGA-19-5955-01 1 17609431 17609431 C T PADI3 Missense_Mutation p.R618W 0.13 deleterious(0.04) possibly_damaging(0.883) TCGA-19-5955-01 1 176734853 176734853 T C PAPPA2 Silent p.L1401L 0.04 TCGA-19-5955-01 1 226125177 226125177 C T LEFTY2 Silent p.S355S 0.17 TCGA-19-5955-01 1 24202118 24202118 C A CNR2 5'UTR 0.05 TCGA-19-5955-01 1 248343988 248343988 G A OR2M2 Missense_Mutation p.R234H 0.16 tolerated(0.09) benign(0.036) TCGA-19-5955-01 1 248813409 248813409 G A OR2T27 Silent p.Y259Y 0.26 TCGA-19-5955-01 1 25784890 25784890 G A TMEM57 Missense_Mutation p.G221R 0.16 tolerated(0.13) possibly_damaging(0.826) TCGA-19-5955-01 1 70716405 70716405 G T SRSF11 Nonsense_Mutation p.E458* 0.15 TCGA-19-5955-01 1 75037396 75037396 C T C1orf173 Missense_Mutation p.G1333E 0.26 tolerated(0.09) benign(0.011) TCGA-19-5955-01 20 1517818 1517818 C T SIRPD Missense_Mutation p.R187Q 0.21 unknown(0) TCGA-19-5955-01 20 35776290 35776290 A C MROH8 Missense_Mutation p.L393R 0.21 deleterious(0) probably_damaging(1) TCGA-19-5955-01 22 50717405 50717405 G A PLXNB2 Silent p.D1475D 0.15 TCGA-19-5955-01 2 108479461 108479461 G A RGPD4 Missense_Mutation p.M814I 0.11 tolerated(0.08) benign(0.006) TCGA-19-5955-01 2 179446667 179446667 G A TTN Silent p.D22143D 0.17 TCGA-19-5955-01 2 179666963 179666963 G A TTN Missense_Mutation p.T66M 0.21 TCGA-19-5955-01 2 231775803 231775803 G A GPR55 5'UTR 0.25 TCGA-19-5955-01 2 74598790 74598790 C T DCTN1 Silent p.A173A 0.14 TCGA-19-5955-01 3 108572525 108572525 G A TRAT1 Missense_Mutation p.R121H 0.15 tolerated(0.6) benign(0.016) TCGA-19-5955-01 3 119962857 119962857 G A GPR156 Missense_Mutation p.T30I 0.13 tolerated(0.33) possibly_damaging(0.894) TCGA-19-5955-01 3 140185512 140185512 G A CLSTN2 Missense_Mutation p.R428Q 0.25 tolerated(0.09) probably_damaging(0.971) TCGA-19-5955-01 3 167083682 167083682 C A ZBBX Missense_Mutation p.V89F 0.15 tolerated(0.18) benign(0.059) TCGA-19-5955-01 3 36779980 36779980 G A DCLK3 Silent p.T57T 0.21 TCGA-19-5955-01 3 42567437 42567437 G A VIPR1 Silent p.P117P 0.10 TCGA-19-5955-01 3 51746533 51746533 C T GRM2 Silent p.Y165Y 0.21 TCGA-19-5955-01 4 175898963 175898963 G C ADAM29 Missense_Mutation p.V763L 0.15 tolerated(0.3) benign(0) TCGA-19-5955-01 4 49040170 49040170 A C CWH43 Silent p.L592L 0.17 TCGA-19-5955-01 4 70823249 70823249 G T CSN2 Missense_Mutation p.H140N 0.14 tolerated(0.09) possibly_damaging(0.728) TCGA-19-5955-01 4 85719250 85719250 C T WDFY3 Missense_Mutation p.R945H 0.22 deleterious(0) benign(0.222) TCGA-19-5955-01 5 140024744 140024744 G C TMCO6 3'UTR 0.12 TCGA-19-5955-01 5 140249928 140249928 C A PCDHA11 Missense_Mutation p.R414S 0.07 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-19-5955-01 5 140250294 140250294 G A PCDHA11 Missense_Mutation p.A536T 0.08 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-19-5955-01 5 140553185 140553185 G A PCDHB7 Missense_Mutation p.V257I 0.15 tolerated_low_confidence(0.72) benign(0.001) TCGA-19-5955-01 5 140605446 140605446 G A PCDHB14 Missense_Mutation p.R790Q 0.15 tolerated_low_confidence(0.23) benign(0.002) TCGA-19-5955-01 5 40841414 40841414 T C CARD6 5'UTR 0.19 TCGA-19-5955-01 5 67591246 67591246 A G PIK3R1 Splice_Site p.X582_splice 0.18 TCGA-19-5955-01 6 38256068 38256068 C T BTBD9 Silent p.P478P 0.18 TCGA-19-5955-01 6 51524416 51524416 A G PKHD1 Missense_Mutation p.L3503P 0.14 tolerated(0.1) benign(0.008) TCGA-19-5955-01 7 100877603 100877603 T C CLDN15 Missense_Mutation p.K113R 0.12 deleterious(0) probably_damaging(1) TCGA-19-5955-01 7 126409978 126409978 C T GRM8 Missense_Mutation p.R433Q 0.16 tolerated(0.53) benign(0.01) TCGA-19-5955-01 7 50468241 50468241 C A IKZF1 Nonsense_Mutation p.C450* 0.09 TCGA-19-5955-01 8 101730507 101730507 C T PABPC1 Silent p.A65A 0.14 TCGA-19-5955-01 8 104778688 104778688 T C RIMS2 Silent p.H207H 0.25 TCGA-19-5955-01 8 23702306 23702306 G A STC1 Missense_Mutation p.R241C 0.13 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-19-5955-01 8 56866431 56866431 T C LYN Silent p.C226C 0.16 TCGA-19-5955-01 8 70980585 70980585 T C PRDM14 Silent p.P264P 0.10 TCGA-19-5955-01 8 87242105 87242105 C A SLC7A13 Missense_Mutation p.K134N 0.17 deleterious(0.02) probably_damaging(0.965) TCGA-19-5955-01 9 104238126 104238126 A G TMEM246 3'UTR 0.11 TCGA-19-5955-01 9 114982449 114982449 T C PTBP3 3'UTR 0.23 TCGA-19-5955-01 9 119488220 119488220 T C ASTN2 Missense_Mutation p.N828S 0.18 tolerated(0.22) unknown(0) TCGA-19-5955-01 9 137777089 137777089 G A FCN2 Silent p.P102P 0.20 TCGA-19-5955-01 9 14775892 14775892 C T FREM1 Silent p.G1584G 0.13 TCGA-19-5955-01 9 19050342 19050342 G A RRAGA Missense_Mutation p.E229K 0.21 deleterious(0) probably_damaging(1) TCGA-19-5955-01 9 32632340 32632340 G A TAF1L Missense_Mutation p.R1080C 0.23 deleterious(0.03) possibly_damaging(0.556) TCGA-19-5955-01 9 95738835 95738835 C T FGD3 Silent p.G99G 0.16 TCGA-19-5955-01 X 123220476 123220476 C T STAG2 Nonsense_Mutation p.R1045* 0.06 TCGA-19-5955-01 X 153129351 153129351 G A L1CAM Silent p.G1148G 0.12 TCGA-19-5955-01 X 48771532 48771532 G A PIM2 Missense_Mutation p.P271L 0.39 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 10 100152744 100152744 G A PYROXD2 Silent p.I294I 0.24 TCGA-19-5956-01 10 100185318 100185318 G A HPS1 Nonsense_Mutation p.R439* 0.22 TCGA-19-5956-01 10 100185662 100185662 G A HPS1 Silent p.N356N 0.30 TCGA-19-5956-01 10 100219420 100219420 G A HPSE2 Missense_Mutation p.R564W 0.18 tolerated(0.05) probably_damaging(0.997) TCGA-19-5956-01 10 100380361 100380361 G T HPSE2 Missense_Mutation p.F401L 0.17 deleterious(0.02) probably_damaging(0.994) TCGA-19-5956-01 10 100904029 100904029 T G HPSE2 Missense_Mutation p.Q192H 0.31 tolerated(0.14) probably_damaging(0.966) TCGA-19-5956-01 10 100904077 100904077 G A HPSE2 Silent p.L176L 0.27 TCGA-19-5956-01 10 100995576 100995576 A G HPSE2 5'UTR 0.20 TCGA-19-5956-01 10 101293047 101293047 G A NKX2-3 Silent p.T53T 0.22 TCGA-19-5956-01 10 101474360 101474360 C T COX15 Missense_Mutation p.R406Q 0.37 deleterious(0) probably_damaging(0.96) TCGA-19-5956-01 10 101556899 101556899 C T ABCC2 Silent p.V226V 0.60 TCGA-19-5956-01 10 101565141 101565141 C A ABCC2 Silent p.V489V 0.23 TCGA-19-5956-01 10 101639706 101639706 C T DNMBP Silent p.R1470R 0.62 TCGA-19-5956-01 10 101715917 101715917 C T DNMBP Silent p.P438P 0.09 TCGA-19-5956-01 10 101923786 101923786 C A ERLIN1 Missense_Mutation p.E210D 0.19 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 10 102005555 102005555 C T CWF19L1 Splice_Site p.X322_splice 0.24 TCGA-19-5956-01 10 102016143 102016143 C A CWF19L1 Missense_Mutation p.S127I 0.14 tolerated(0.43) benign(0.129) TCGA-19-5956-01 10 102059451 102059451 C A PKD2L1 Missense_Mutation p.S125I 0.28 deleterious(0.03) possibly_damaging(0.655) TCGA-19-5956-01 10 102089695 102089695 C A PKD2L1 Nonsense_Mutation p.E56* 0.12 TCGA-19-5956-01 10 102248681 102248681 C T SEC31B Silent p.E1074E 0.11 TCGA-19-5956-01 10 102249924 102249924 G T SEC31B Missense_Mutation p.L936M 0.29 tolerated(0.16) possibly_damaging(0.614) TCGA-19-5956-01 10 102739950 102739950 T C SEMA4G Silent p.F400F 0.33 TCGA-19-5956-01 10 102753234 102753234 C T C10orf2 Silent p.P674P 0.29 TCGA-19-5956-01 10 102789797 102789797 G T PDZD7 Silent p.A60A 0.08 TCGA-19-5956-01 10 103433266 103433266 G A FBXW4 Missense_Mutation p.S174L 0.61 deleterious(0.01) benign(0.217) TCGA-19-5956-01 10 103546219 103546219 G A MGEA5 Missense_Mutation p.R914W 0.36 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 10 103827241 103827241 C A HPS6 Silent p.I670I 0.24 TCGA-19-5956-01 10 103899996 103899996 C T PPRC1 Silent p.V577V 0.61 TCGA-19-5956-01 10 103921993 103921993 C A NOLC1 Silent p.V689V 0.13 TCGA-19-5956-01 10 1042065 1042065 C T GTPBP4 Nonsense_Mutation p.R115* 0.27 TCGA-19-5956-01 10 104353792 104353792 G T SUFU Missense_Mutation p.E242D 0.19 tolerated(0.08) possibly_damaging(0.579) TCGA-19-5956-01 10 104488286 104488286 G T SFXN2 Missense_Mutation p.R144M 0.28 tolerated(0.1) possibly_damaging(0.903) TCGA-19-5956-01 10 104809495 104809495 A G CNNM2 Silent p.V551V 0.30 TCGA-19-5956-01 10 105201608 105201608 C T PDCD11 Missense_Mutation p.A1528V 0.50 tolerated(0.94) benign(0.001) TCGA-19-5956-01 10 105363132 105363132 C T SH3PXD2A Missense_Mutation p.E587K 0.42 tolerated_low_confidence(0.53) probably_damaging(0.973) TCGA-19-5956-01 10 105768080 105768080 A C SLK Missense_Mutation p.K917T 0.17 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 10 105785377 105785377 T G SLK Missense_Mutation p.F1203V 0.43 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 10 105807853 105807853 C T COL17A1 Missense_Mutation p.G746D 0.39 probably_damaging(0.996) TCGA-19-5956-01 10 105816824 105816824 G A COL17A1 Silent p.C458C 0.67 TCGA-19-5956-01 10 105819897 105819897 G A COL17A1 Missense_Mutation p.S374F 0.47 unknown(0) TCGA-19-5956-01 10 105830304 105830304 G A COL17A1 Missense_Mutation p.R163C 0.48 unknown(0) TCGA-19-5956-01 10 105907746 105907746 T C WDR96 Missense_Mutation p.K1224R 0.46 deleterious(0.01) probably_damaging(0.966) TCGA-19-5956-01 10 105923959 105923959 G A WDR96 Nonsense_Mutation p.R1047* 0.22 TCGA-19-5956-01 10 106037842 106037842 C T GSTO2 Missense_Mutation p.R112C 0.47 tolerated(0.25) benign(0.001) TCGA-19-5956-01 10 106118324 106118324 G A CCDC147 Missense_Mutation p.A79T 0.48 tolerated(0.15) benign(0.133) TCGA-19-5956-01 10 106121897 106121897 G T CCDC147 Missense_Mutation p.Q136H 0.27 deleterious(0) benign(0.111) TCGA-19-5956-01 10 106214254 106214254 G A CCDC147 Missense_Mutation p.G862E 0.43 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 10 1066742 1066742 G A IDI2 Missense_Mutation p.R111C 0.58 deleterious(0.01) benign(0.269) TCGA-19-5956-01 10 108337210 108337210 G A SORCS1 Intron 0.62 TCGA-19-5956-01 10 108432720 108432720 C T SORCS1 Missense_Mutation p.R655H 0.38 deleterious(0.03) benign(0.052) TCGA-19-5956-01 10 1090084 1090084 T C IDI1 Silent p.V56V 0.34 TCGA-19-5956-01 10 111630638 111630638 C T XPNPEP1 Missense_Mutation p.R516H 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 10 111640650 111640650 C T XPNPEP1 Missense_Mutation p.A361T 0.50 tolerated(0.62) benign(0.061) TCGA-19-5956-01 10 1132278 1132278 C T WDR37 Silent p.Y195Y 0.15 TCGA-19-5956-01 10 113920403 113920403 C T GPAM Missense_Mutation p.S573N 0.58 deleterious(0.02) possibly_damaging(0.507) TCGA-19-5956-01 10 113923524 113923524 C A GPAM Missense_Mutation p.R453I 0.43 tolerated(0.21) benign(0.245) TCGA-19-5956-01 10 113928230 113928230 C T GPAM Missense_Mutation p.G316D 0.08 tolerated(0.1) probably_damaging(1) TCGA-19-5956-01 10 114043548 114043548 C T TECTB Missense_Mutation p.S19L 0.36 deleterious(0.01) benign(0.183) TCGA-19-5956-01 10 114710624 114710624 G A TCF7L2 Missense_Mutation p.A37T 0.31 tolerated(0.55) possibly_damaging(0.733) TCGA-19-5956-01 10 114912149 114912149 C T TCF7L2 Nonsense_Mutation p.R407* 0.35 TCGA-19-5956-01 10 11505394 11505394 C T USP6NL Silent p.A528A 0.11 TCGA-19-5956-01 10 11505545 11505545 G T USP6NL Missense_Mutation p.S478Y 0.56 deleterious(0) possibly_damaging(0.681) TCGA-19-5956-01 10 115341734 115341734 G T HABP2 Missense_Mutation p.R313I 0.49 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 10 115534610 115534610 T C PLEKHS1 Missense_Mutation p.S263P 0.17 tolerated(0.24) benign(0.061) TCGA-19-5956-01 10 115536933 115536933 G A PLEKHS1 Missense_Mutation p.G361E 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 10 116225510 116225510 C T ABLIM1 Missense_Mutation p.R463H 0.07 deleterious(0.02) possibly_damaging(0.871) TCGA-19-5956-01 10 116331093 116331093 C T ABLIM1 Silent p.P212P 0.33 TCGA-19-5956-01 10 116735263 116735263 C A TRUB1 3'UTR 0.37 TCGA-19-5956-01 10 117226686 117226686 G A ATRNL1 Silent p.S1140S 0.50 TCGA-19-5956-01 10 117823898 117823898 T G GFRA1 3'UTR 0.48 TCGA-19-5956-01 10 118228777 118228777 G T PNLIPRP3 Missense_Mutation p.K336N 0.35 tolerated(0.27) benign(0.004) TCGA-19-5956-01 10 118236633 118236633 C A PNLIPRP3 Missense_Mutation p.P458T 0.52 deleterious(0.01) benign(0.148) TCGA-19-5956-01 10 118969418 118969418 G A KCNK18 Missense_Mutation p.E255K 0.40 deleterious(0) possibly_damaging(0.905) TCGA-19-5956-01 10 119003706 119003706 G A SLC18A2 Missense_Mutation p.D116N 0.36 tolerated(0.48) benign(0.225) TCGA-19-5956-01 10 119026245 119026245 C T SLC18A2 Silent p.G331G 0.41 TCGA-19-5956-01 10 119042985 119042985 G T PDZD8 Missense_Mutation p.L1087I 0.37 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 10 11997397 11997397 G T UPF2 Missense_Mutation p.S895Y 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-19-5956-01 10 120816470 120816470 C T EIF3A Missense_Mutation p.R687H 0.48 deleterious(0) unknown(0) TCGA-19-5956-01 10 120819196 120819196 C T EIF3A Missense_Mutation p.R454H 0.14 tolerated(0.06) unknown(0) TCGA-19-5956-01 10 120907363 120907363 C A SFXN4 Nonsense_Mutation p.E248* 0.30 TCGA-19-5956-01 10 121259600 121259600 C T RGS10 3'UTR 0.33 TCGA-19-5956-01 10 121347719 121347719 A T TIAL1 Missense_Mutation p.I25K 0.32 deleterious(0) possibly_damaging(0.839) TCGA-19-5956-01 10 121571298 121571298 G A INPP5F Missense_Mutation p.D573N 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-19-5956-01 10 121586215 121586215 G T INPP5F Missense_Mutation p.K774N 0.18 deleterious(0.02) possibly_damaging(0.451) TCGA-19-5956-01 10 121586929 121586929 G A INPP5F Silent p.S1012S 0.20 TCGA-19-5956-01 10 12200105 12200105 G A SEC61A2 Splice_Site p.X325_splice 0.21 TCGA-19-5956-01 10 12208687 12208687 A C NUDT5 3'UTR 0.57 TCGA-19-5956-01 10 12288278 12288278 T C CDC123 Splice_Site p.X282_splice 0.30 TCGA-19-5956-01 10 123244913 123244913 C T FGFR2 Missense_Mutation p.E732K 0.42 deleterious(0) benign(0.333) TCGA-19-5956-01 10 123278344 123278344 C A FGFR2 Splice_Site p.X314_splice 0.43 TCGA-19-5956-01 10 123298143 123298143 G A FGFR2 Silent p.Y237Y 0.42 TCGA-19-5956-01 10 123596281 123596281 A C ATE1 Nonsense_Mutation p.Y403* 0.21 TCGA-19-5956-01 10 123848102 123848102 G T TACC2 Nonsense_Mutation p.E1857* 0.40 TCGA-19-5956-01 10 123892202 123892202 C A TACC2 Nonsense_Mutation p.Y1884* 0.60 TCGA-19-5956-01 10 124189488 124189488 G A PLEKHA1 3'UTR 0.25 TCGA-19-5956-01 10 124340386 124340386 C T DMBT1 Silent p.P336P 0.37 TCGA-19-5956-01 10 124457407 124457407 G T C10orf120 Missense_Mutation p.L284I 0.36 deleterious(0.04) probably_damaging(0.996) TCGA-19-5956-01 10 124593449 124593449 G A CUZD1 Nonsense_Mutation p.R464* 0.43 TCGA-19-5956-01 10 124746901 124746901 C T PSTK Missense_Mutation p.A310V 0.36 deleterious_low_confidence(0.05) benign(0.041) TCGA-19-5956-01 10 124746923 124746923 G A PSTK Silent p.R317R 0.42 TCGA-19-5956-01 10 124797280 124797280 G T ACADSB Nonsense_Mutation p.E74* 0.38 TCGA-19-5956-01 10 124922204 124922204 G A BUB3 Silent p.T277T 0.48 TCGA-19-5956-01 10 125516731 125516731 G A CPXM2 Nonsense_Mutation p.Q639* 0.42 TCGA-19-5956-01 10 125639816 125639816 C T CPXM2 Missense_Mutation p.S105N 0.52 tolerated_low_confidence(0.31) benign(0) TCGA-19-5956-01 10 125801871 125801871 C T CHST15 Missense_Mutation p.G327R 0.49 tolerated(0.33) benign(0.016) TCGA-19-5956-01 10 125805226 125805226 C A CHST15 Missense_Mutation p.R168I 0.06 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 10 125805319 125805319 T C CHST15 Missense_Mutation p.Q137R 0.37 tolerated(0.51) benign(0.002) TCGA-19-5956-01 10 125805359 125805359 C A CHST15 Missense_Mutation p.D124Y 0.09 deleterious(0.01) possibly_damaging(0.855) TCGA-19-5956-01 10 125805533 125805533 C T CHST15 Missense_Mutation p.E66K 0.41 tolerated(0.27) benign(0.011) TCGA-19-5956-01 10 127417939 127417939 G T EDRF1 Missense_Mutation p.D303Y 0.24 deleterious(0.01) probably_damaging(0.963) TCGA-19-5956-01 10 127436128 127436128 G A EDRF1 Silent p.A946A 0.27 TCGA-19-5956-01 10 127540994 127540994 C A DHX32 Nonsense_Mutation p.E407* 0.31 TCGA-19-5956-01 10 127541959 127541959 T G BCCIP 3'UTR 0.19 TCGA-19-5956-01 10 127555572 127555572 C T DHX32 Missense_Mutation p.E155K 0.60 tolerated(0.4) possibly_damaging(0.838) TCGA-19-5956-01 10 127806654 127806654 C T ADAM12 Missense_Mutation p.A189T 0.05 tolerated(0.59) benign(0.001) TCGA-19-5956-01 10 128192952 128192952 C T C10orf90 Missense_Mutation p.V273I 0.52 tolerated(0.1) benign(0.038) TCGA-19-5956-01 10 129216800 129216800 G A DOCK1 Missense_Mutation p.E1542K 0.28 deleterious(0) possibly_damaging(0.745) TCGA-19-5956-01 10 129861379 129861379 A G PTPRE Missense_Mutation p.R220G 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 10 129905055 129905055 G T MKI67 Silent p.I1683I 0.26 TCGA-19-5956-01 10 129907281 129907281 G A MKI67 Silent p.N941N 0.06 TCGA-19-5956-01 10 129921155 129921155 G A MKI67 Missense_Mutation p.R93C 0.52 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 10 131565221 131565221 C T MGMT Missense_Mutation p.A226V 0.81 tolerated_low_confidence(0.77) unknown(0) TCGA-19-5956-01 10 13164416 13164416 C T OPTN Missense_Mutation p.R271C 0.25 tolerated(0.21) possibly_damaging(0.677) TCGA-19-5956-01 10 13370364 13370364 C T SEPHS1 Silent p.R246R 0.71 TCGA-19-5956-01 10 133930728 133930728 C T JAKMIP3 Silent p.L95L 0.13 TCGA-19-5956-01 10 134161812 134161812 C T LRRC27 Missense_Mutation p.A293V 0.12 deleterious(0) benign(0.001) TCGA-19-5956-01 10 134743074 134743074 C T TTC40 Intron 0.16 TCGA-19-5956-01 10 134750520 134750520 C A TTC40 Nonsense_Mutation p.E234* 0.26 TCGA-19-5956-01 10 135009188 135009188 G A KNDC1 Missense_Mutation p.A533T 0.21 deleterious(0) possibly_damaging(0.757) TCGA-19-5956-01 10 135038196 135038196 G A KNDC1 Silent p.A1684A 0.64 TCGA-19-5956-01 10 135084716 135084716 G A ADAM8 Silent p.C454C 0.44 TCGA-19-5956-01 10 135085954 135085954 G A ADAM8 Missense_Mutation p.R281W 0.25 deleterious(0.02) possibly_damaging(0.663) TCGA-19-5956-01 10 135086508 135086508 G A ADAM8 Nonsense_Mutation p.R197* 0.18 TCGA-19-5956-01 10 135140428 135140428 G A CALY Missense_Mutation p.A105V 0.18 tolerated(0.23) probably_damaging(0.938) TCGA-19-5956-01 10 135204836 135204836 G A RP11-108K14.8 Missense_Mutation p.G11R 0.12 deleterious_low_confidence(0.01) benign(0) TCGA-19-5956-01 10 13534717 13534717 G A BEND7 Missense_Mutation p.S192L 0.32 tolerated_low_confidence(0.35) benign(0.066) TCGA-19-5956-01 10 135440127 135440127 G A FRG2B Silent p.F40F 0.15 TCGA-19-5956-01 10 14816459 14816459 G A FAM107B Silent p.S68S 0.08 TCGA-19-5956-01 10 15008576 15008576 G A MEIG1 Missense_Mutation p.E37K 0.51 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 10 15702890 15702890 C A ITGA8 Missense_Mutation p.Q293H 0.60 tolerated(0.13) benign(0.26) TCGA-19-5956-01 10 15879219 15879219 G A FAM188A Missense_Mutation p.S187F 0.34 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 10 16526572 16526572 C T PTER Silent p.N63N 0.53 TCGA-19-5956-01 10 17026158 17026158 C T CUBN Missense_Mutation p.D1491N 0.28 tolerated(0.06) possibly_damaging(0.787) TCGA-19-5956-01 10 17113487 17113487 G T CUBN Missense_Mutation p.L855I 0.70 tolerated(0.39) benign(0.042) TCGA-19-5956-01 10 17153045 17153045 C T CUBN Nonsense_Mutation p.W296* 0.31 TCGA-19-5956-01 10 17199699 17199699 C T TRDMT1 Missense_Mutation p.V210I 0.33 tolerated(0.6) benign(0.001) TCGA-19-5956-01 10 17756612 17756612 G A STAM Missense_Mutation p.A486T 0.26 tolerated(0.3) benign(0.001) TCGA-19-5956-01 10 17908618 17908618 T C MRC1L1 Silent p.L611L 0.52 TCGA-19-5956-01 10 18242455 18242455 G T SLC39A12 Missense_Mutation p.D84Y 0.66 deleterious(0.03) benign(0.287) TCGA-19-5956-01 10 18254600 18254600 G A SLC39A12 Silent p.T244T 0.61 TCGA-19-5956-01 10 18629766 18629766 G T CACNB2 Intron 0.33 TCGA-19-5956-01 10 21784717 21784717 G A CASC10 Missense_Mutation p.P75S 0.43 deleterious_low_confidence(0.03) probably_damaging(0.932) TCGA-19-5956-01 10 22880596 22880596 C T PIP4K2A Missense_Mutation p.V152M 0.30 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 10 24508823 24508823 G T KIAA1217 Missense_Mutation p.E113D 0.16 tolerated(0.15) probably_damaging(0.995) TCGA-19-5956-01 10 24832860 24832860 C T KIAA1217 Missense_Mutation p.S1554L 0.25 tolerated(0.06) benign(0.407) TCGA-19-5956-01 10 24833058 24833058 C T KIAA1217 Missense_Mutation p.A1620V 0.41 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 10 24880594 24880594 C A ARHGAP21 Nonsense_Mutation p.E1341* 0.28 TCGA-19-5956-01 10 24909112 24909112 C T ARHGAP21 Missense_Mutation p.R571Q 0.25 tolerated(0.16) possibly_damaging(0.898) TCGA-19-5956-01 10 25273242 25273242 C T ENKUR 3'UTR 0.13 TCGA-19-5956-01 10 25279436 25279436 C A ENKUR Missense_Mutation p.A184S 0.10 deleterious(0.03) benign(0.262) TCGA-19-5956-01 10 25313735 25313735 G A THNSL1 Missense_Mutation p.R528Q 0.16 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 10 25888044 25888044 A G GPR158 Silent p.Q1163Q 0.10 TCGA-19-5956-01 10 26313005 26313005 C T MYO3A Silent p.D262D 0.33 TCGA-19-5956-01 10 26377246 26377246 G T MYO3A Nonsense_Mutation p.E492* 0.30 TCGA-19-5956-01 10 26513522 26513522 G T GAD2 Missense_Mutation p.K222N 0.58 deleterious(0.04) benign(0.347) TCGA-19-5956-01 10 27024173 27024173 C A PDSS1 Missense_Mutation p.S279Y 0.60 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 10 27303630 27303630 G A ANKRD26 Missense_Mutation p.A1506V 0.70 deleterious(0.05) probably_damaging(0.999) TCGA-19-5956-01 10 27536613 27536613 G T RP11-85G18.6 Intron 0.23 TCGA-19-5956-01 10 27687611 27687611 A C PTCHD3 Missense_Mutation p.I639S 0.24 deleterious(0) possibly_damaging(0.511) TCGA-19-5956-01 10 28032252 28032252 G A MKX Silent p.S31S 0.15 TCGA-19-5956-01 10 28233169 28233169 G A ARMC4 Silent p.H575H 0.32 TCGA-19-5956-01 10 28884908 28884908 C A WAC Missense_Mutation p.S286Y 0.22 deleterious_low_confidence(0.01) possibly_damaging(0.459) TCGA-19-5956-01 10 28905137 28905137 C A WAC Missense_Mutation p.T531N 0.19 deleterious(0.04) benign(0.001) TCGA-19-5956-01 10 28970967 28970967 G T BAMBI Missense_Mutation p.Q140H 0.11 tolerated(0.15) benign(0.007) TCGA-19-5956-01 10 294499 294499 C T ZMYND11 Missense_Mutation p.S484L 0.30 tolerated(0.21) benign(0.042) TCGA-19-5956-01 10 29710413 29710413 T C PTCHD3P1 RNA 0.71 TCGA-19-5956-01 10 30306781 30306781 G A KIAA1462 3'UTR 0.22 TCGA-19-5956-01 10 30317420 30317420 C T KIAA1462 Missense_Mutation p.E553K 0.23 tolerated(0.15) benign(0.141) TCGA-19-5956-01 10 30318246 30318246 C A KIAA1462 Missense_Mutation p.K277N 0.08 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 10 30318281 30318281 C T KIAA1462 Missense_Mutation p.A266T 0.20 tolerated(0.3) benign(0.33) TCGA-19-5956-01 10 30638059 30638059 C T MTPAP Missense_Mutation p.S49N 0.08 tolerated_low_confidence(0.2) benign(0.003) TCGA-19-5956-01 10 3185614 3185614 C T PITRM1 Missense_Mutation p.R872Q 0.26 tolerated(0.37) probably_damaging(0.921) TCGA-19-5956-01 10 32197315 32197315 C T ARHGAP12 Missense_Mutation p.G157R 0.12 tolerated(0.06) probably_damaging(0.968) TCGA-19-5956-01 10 323515 323515 G A DIP2C Missense_Mutation p.A1474V 0.58 deleterious(0.02) probably_damaging(0.994) TCGA-19-5956-01 10 33113518 33113518 G T C10ORF68 Missense_Mutation p.R356I 0.14 tolerated(0.13) benign(0.022) TCGA-19-5956-01 10 33143418 33143418 G A C10ORF68 Splice_Site p.X614_splice 0.21 TCGA-19-5956-01 10 33190494 33190494 G T ITGB1 3'UTR 0.18 TCGA-19-5956-01 10 33515189 33515189 G A NRP1 Missense_Mutation p.T337M 0.18 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 10 33552659 33552659 G A NRP1 Silent p.S191S 0.27 TCGA-19-5956-01 10 34630587 34630587 C T PARD3 Nonsense_Mutation p.W795* 0.22 TCGA-19-5956-01 10 35318451 35318451 C A CUL2 Missense_Mutation p.D521Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 10 35327865 35327865 C T CUL2 Missense_Mutation p.R306Q 0.21 tolerated(0.39) benign(0.002) TCGA-19-5956-01 10 35456576 35456576 G T CREM Intron 0.22 TCGA-19-5956-01 10 35484898 35484898 G T CREM Intron 0.91 TCGA-19-5956-01 10 37414880 37414880 G A ANKRD30A 5'UTR 0.64 TCGA-19-5956-01 10 37418920 37418920 G A ANKRD30A Silent p.R51R 0.68 TCGA-19-5956-01 10 37422864 37422864 T C ANKRD30A Missense_Mutation p.V157A 0.20 deleterious(0.05) benign(0) TCGA-19-5956-01 10 37422883 37422883 G T ANKRD30A Missense_Mutation p.E163D 0.15 tolerated(0.62) possibly_damaging(0.874) TCGA-19-5956-01 10 37438704 37438704 G A ANKRD30A Splice_Site p.X469_splice 0.15 TCGA-19-5956-01 10 38121495 38121495 G A ZNF248 Missense_Mutation p.P263L 0.69 tolerated(0.09) benign(0) TCGA-19-5956-01 10 38241919 38241919 C T ZNF25 Silent p.T169T 0.64 TCGA-19-5956-01 10 38345247 38345247 G A ZNF33A Missense_Mutation p.R732H 0.75 tolerated(0.78) benign(0.018) TCGA-19-5956-01 10 38407123 38407123 G A ZNF37A Silent p.T348T 0.10 TCGA-19-5956-01 10 38407623 38407623 G T ZNF37A Missense_Mutation p.R515I 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-19-5956-01 10 43089233 43089233 C A ZNF33B Nonsense_Mutation p.E389* 0.30 TCGA-19-5956-01 10 43288450 43288450 C A BMS1 Missense_Mutation p.P316H 0.08 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 10 43315770 43315770 G T BMS1 Missense_Mutation p.E889D 0.20 deleterious(0.02) probably_damaging(0.929) TCGA-19-5956-01 10 435954 435954 G A DIP2C Missense_Mutation p.T525M 0.18 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 10 43597849 43597849 C T RET Missense_Mutation p.R133C 0.16 deleterious_low_confidence(0.01) possibly_damaging(0.732) TCGA-19-5956-01 10 45429205 45429205 C A TMEM72 Silent p.V110V 0.23 TCGA-19-5956-01 10 45430338 45430338 A C TMEM72 Missense_Mutation p.K195T 0.11 tolerated(0.26) benign(0.006) TCGA-19-5956-01 10 45498848 45498848 C A ZNF22 Missense_Mutation p.S11Y 0.62 deleterious_low_confidence(0.02) possibly_damaging(0.692) TCGA-19-5956-01 10 45920517 45920517 G A ALOX5 Silent p.P257P 0.41 TCGA-19-5956-01 10 46111853 46111853 C A ZFAND4 3'UTR 0.10 TCGA-19-5956-01 10 468788 468788 C T DIP2C Missense_Mutation p.D194N 0.22 deleterious(0.03) benign(0.012) TCGA-19-5956-01 10 46960034 46960034 G T SYT15 3'Flank 0.14 TCGA-19-5956-01 10 46965722 46965722 C T SYT15 Missense_Mutation p.S272N 0.07 tolerated(0.72) benign(0.002) TCGA-19-5956-01 10 48370805 48370805 G A ZNF488 Silent p.P91P 0.19 TCGA-19-5956-01 10 48390110 48390110 G A RBP3 Silent p.G256G 0.24 TCGA-19-5956-01 10 48416667 48416667 G A GDF2 Silent p.A9A 0.13 TCGA-19-5956-01 10 48426522 48426522 G A GDF10 3'UTR 0.23 TCGA-19-5956-01 10 49379245 49379245 T G FRMPD2 Missense_Mutation p.K1077T 0.13 tolerated(0.72) benign(0.038) TCGA-19-5956-01 10 49431231 49431231 G A FRMPD2 Silent p.T417T 0.21 TCGA-19-5956-01 10 49633968 49633968 A T MAPK8 Silent p.G242G 0.60 TCGA-19-5956-01 10 50227713 50227713 G A VSTM4 Silent p.F315F 0.67 TCGA-19-5956-01 10 50531266 50531266 G T C10orf71 Nonsense_Mutation p.E226* 0.31 TCGA-19-5956-01 10 50532382 50532382 G A C10orf71 Missense_Mutation p.A598T 0.54 tolerated(0.78) benign(0.001) TCGA-19-5956-01 10 50574337 50574337 C T DRGX Missense_Mutation p.V211M 0.24 deleterious(0) probably_damaging(0.921) TCGA-19-5956-01 10 50681042 50681042 C T ERCC6 Silent p.T914T 0.20 TCGA-19-5956-01 10 50723999 50723999 C T ERCC6-PGBD3 Missense_Mutation p.D856N 0.59 tolerated_low_confidence(0.23) unknown(0) TCGA-19-5956-01 10 50724387 50724387 C A ERCC6-PGBD3 Missense_Mutation p.M726I 0.40 tolerated_low_confidence(0.28) unknown(0) TCGA-19-5956-01 10 50724620 50724620 T G ERCC6-PGBD3 Missense_Mutation p.K649Q 0.24 tolerated_low_confidence(0.07) unknown(0) TCGA-19-5956-01 10 50948764 50948764 C T OGDHL Missense_Mutation p.G711E 0.48 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 10 50952772 50952772 G T OGDHL Silent p.I552I 0.26 TCGA-19-5956-01 10 50958902 50958902 G T OGDHL Silent p.I293I 0.33 TCGA-19-5956-01 10 51585482 51585482 G T NCOA4 Missense_Mutation p.M543I 0.10 tolerated(0.44) benign(0.001) TCGA-19-5956-01 10 51585586 51585586 G A NCOA4 Missense_Mutation p.R578Q 0.74 deleterious(0.01) benign(0.424) TCGA-19-5956-01 10 51748511 51748511 C T AGAP6 Silent p.S12S 0.72 TCGA-19-5956-01 10 51769922 51769922 C T AGAP6 Silent p.Y679Y 0.41 TCGA-19-5956-01 10 51974517 51974517 A G ASAH2 Missense_Mutation p.C376R 0.41 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 10 51978378 51978378 G A ASAH2 Silent p.I302I 0.25 TCGA-19-5956-01 10 52005152 52005152 C T ASAH2 Missense_Mutation p.A64T 0.58 tolerated_low_confidence(0.6) benign(0) TCGA-19-5956-01 10 52008314 52008314 C A ASAH2 Missense_Mutation p.M19I 0.69 tolerated_low_confidence(0.1) benign(0.004) TCGA-19-5956-01 10 52390332 52390332 C T RP11-50E11.3 RNA 0.53 TCGA-19-5956-01 10 52390881 52390881 C A RP11-50E11.3 RNA 0.57 TCGA-19-5956-01 10 52566421 52566421 G T A1CF 3'UTR 0.44 TCGA-19-5956-01 10 53458193 53458193 G A CSTF2T Missense_Mutation p.R373C 0.27 deleterious_low_confidence(0) probably_damaging(0.988) TCGA-19-5956-01 10 53564426 53564426 C T PRKG1 Missense_Mutation p.T225I 0.28 deleterious(0.04) benign(0.004) TCGA-19-5956-01 10 54074070 54074070 C A DKK1 5'UTR 0.15 TCGA-19-5956-01 10 5435500 5435500 C T TUBAL3 Missense_Mutation p.E441K 0.21 deleterious_low_confidence(0.01) benign(0.262) TCGA-19-5956-01 10 5494847 5494847 A G NET1 Silent p.E186E 0.06 TCGA-19-5956-01 10 55566565 55566565 G A PCDH15 Missense_Mutation p.A1607V 0.23 tolerated_low_confidence(0.23) benign(0.006) TCGA-19-5956-01 10 55581658 55581658 C T PCDH15 Missense_Mutation p.G1945E 0.16 tolerated_low_confidence(1) unknown(0) TCGA-19-5956-01 10 55582307 55582307 C T PCDH15 Missense_Mutation p.E1729K 0.76 tolerated_low_confidence(1) benign(0.002) TCGA-19-5956-01 10 55849754 55849754 G T PCDH15 Missense_Mutation p.L663I 0.25 tolerated(0.52) benign(0.204) TCGA-19-5956-01 10 55996658 55996658 T C PCDH15 Missense_Mutation p.I304V 0.17 deleterious(0.03) probably_damaging(0.977) TCGA-19-5956-01 10 5781857 5781857 C A FAM208B Missense_Mutation p.S575Y 0.17 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 10 5790640 5790640 T G FAM208B Silent p.L1752L 0.13 TCGA-19-5956-01 10 5798596 5798596 C T FAM208B Silent p.G2209G 0.23 TCGA-19-5956-01 10 5955724 5955724 T C FBXO18 Missense_Mutation p.I460T 0.11 deleterious(0) possibly_damaging(0.783) TCGA-19-5956-01 10 6001744 6001744 A G IL15RA Missense_Mutation p.Y197H 0.22 tolerated(0.49) probably_damaging(0.991) TCGA-19-5956-01 10 60154743 60154743 C A TFAM Missense_Mutation p.S217Y 0.25 deleterious(0) possibly_damaging(0.892) TCGA-19-5956-01 10 61564207 61564207 G T CCDC6 Missense_Mutation p.S359Y 0.18 deleterious(0.02) possibly_damaging(0.829) TCGA-19-5956-01 10 61592286 61592286 T G CCDC6 Missense_Mutation p.E193D 0.14 tolerated(0.15) benign(0.138) TCGA-19-5956-01 10 61823980 61823980 G T ANK3 Missense_Mutation p.S4129Y 0.34 probably_damaging(0.996) TCGA-19-5956-01 10 61828522 61828522 G A ANK3 Silent p.S4039S 0.66 TCGA-19-5956-01 10 61834899 61834899 G A ANK3 Missense_Mutation p.R1914W 0.65 probably_damaging(0.985) TCGA-19-5956-01 10 61900114 61900114 C T ANK3 Intron 0.08 TCGA-19-5956-01 10 62544532 62544532 G A CDK1 Missense_Mutation p.R36K 0.68 tolerated(0.05) possibly_damaging(0.833) TCGA-19-5956-01 10 62553663 62553663 G A CDK1 Missense_Mutation p.R275Q 0.19 deleterious(0.04) possibly_damaging(0.516) TCGA-19-5956-01 10 63188777 63188777 C T TMEM26 Missense_Mutation p.R171Q 0.12 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 10 63212567 63212567 T C TMEM26 Intron 0.17 TCGA-19-5956-01 10 64966767 64966767 C T JMJD1C Nonsense_Mutation p.W1554* 0.69 TCGA-19-5956-01 10 67726390 67726390 C A CTNNA3 Nonsense_Mutation p.G794* 0.14 TCGA-19-5956-01 10 68857404 68857404 C A LRRTM3 Nonsense_Mutation p.Y532* 0.26 TCGA-19-5956-01 10 69565526 69565526 C T DNAJC12 Missense_Mutation p.R106K 0.27 tolerated(0.42) benign(0.011) TCGA-19-5956-01 10 69571192 69571192 C T DNAJC12 Intron 0.66 TCGA-19-5956-01 10 69881390 69881390 C A MYPN Silent p.A65A 0.26 TCGA-19-5956-01 10 69934018 69934018 G A MYPN Silent p.P723P 0.60 TCGA-19-5956-01 10 70056759 70056759 C T PBLD Intron 0.29 TCGA-19-5956-01 10 70098397 70098397 G T HNRNPH3 Missense_Mutation p.G130V 0.26 deleterious(0.02) unknown(0) TCGA-19-5956-01 10 70136709 70136709 G A RUFY2 Missense_Mutation p.A444V 0.57 tolerated(0.27) benign(0.017) TCGA-19-5956-01 10 70192062 70192062 G A DNA2 Nonsense_Mutation p.R678* 0.10 TCGA-19-5956-01 10 70406065 70406065 G A TET1 Silent p.S1193S 0.31 TCGA-19-5956-01 10 70451518 70451518 G A TET1 Missense_Mutation p.V2120M 0.07 deleterious(0.03) probably_damaging(0.938) TCGA-19-5956-01 10 70500420 70500420 T C CCAR1 Splice_Site p.X108_splice 0.12 TCGA-19-5956-01 10 70516049 70516049 C T CCAR1 Missense_Mutation p.R549C 0.24 tolerated(0.2) probably_damaging(0.993) TCGA-19-5956-01 10 70532751 70532751 G T CCAR1 Missense_Mutation p.D849Y 0.38 deleterious(0.03) unknown(0) TCGA-19-5956-01 10 70645868 70645868 A C STOX1 Missense_Mutation p.Q772H 0.23 tolerated(0.07) possibly_damaging(0.547) TCGA-19-5956-01 10 70673230 70673230 C A DDX50 Missense_Mutation p.L281I 0.10 deleterious(0.03) probably_damaging(0.967) TCGA-19-5956-01 10 70700879 70700879 G T DDX50 Nonsense_Mutation p.E607* 0.26 TCGA-19-5956-01 10 70776125 70776125 C A KIAA1279 Missense_Mutation p.L607I 0.21 tolerated(0.1) possibly_damaging(0.605) TCGA-19-5956-01 10 70947437 70947437 C T SUPV3L1 Missense_Mutation p.A166V 0.15 tolerated(0.07) possibly_damaging(0.562) TCGA-19-5956-01 10 70992548 70992548 C T HKDC1 Silent p.L85L 0.21 TCGA-19-5956-01 10 71008426 71008426 C T HKDC1 Silent p.H504H 0.72 TCGA-19-5956-01 10 71718510 71718510 T G COL13A1 3'UTR 0.15 TCGA-19-5956-01 10 71851561 71851561 C A H2AFY2 Missense_Mutation p.H110N 0.16 tolerated(0.09) benign(0.005) TCGA-19-5956-01 10 71874075 71874075 C T AIFM2 Silent p.T327T 0.73 TCGA-19-5956-01 10 72020422 72020422 G A NPFFR1 Silent p.F132F 0.20 TCGA-19-5956-01 10 72061265 72061265 C A LRRC20 Splice_Site p.X134_splice 0.19 TCGA-19-5956-01 10 73461808 73461808 G T CDH23 Missense_Mutation p.E401D 0.21 tolerated(0.33) benign(0.248) TCGA-19-5956-01 10 73464799 73464799 C T CDH23 Silent p.R547R 0.10 TCGA-19-5956-01 10 74695439 74695439 C T PLA2G12B Missense_Mutation p.R175H 0.73 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 10 74806828 74806828 C T P4HA1 Missense_Mutation p.R311H 0.47 deleterious(0) possibly_damaging(0.796) TCGA-19-5956-01 10 74890580 74890580 G A NUDT13 Nonsense_Mutation p.W326* 0.29 TCGA-19-5956-01 10 74899482 74899482 T G ECD Missense_Mutation p.S414R 0.04 deleterious(0.05) probably_damaging(0.978) TCGA-19-5956-01 10 75037050 75037050 G A TTC18 Missense_Mutation p.T893I 0.26 tolerated(0.19) benign(0.024) TCGA-19-5956-01 10 75276460 75276460 C A USP54 Missense_Mutation p.D1242Y 0.13 deleterious_low_confidence(0.04) possibly_damaging(0.798) TCGA-19-5956-01 10 75290012 75290012 G A USP54 Missense_Mutation p.R573C 0.29 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 10 75290263 75290263 T G USP54 Missense_Mutation p.K489T 0.20 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 10 75435127 75435127 G A AGAP5 Missense_Mutation p.R431W 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 10 75526875 75526875 G T SEC24C Missense_Mutation p.G653W 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 10 75671786 75671786 G A C10orf55 Missense_Mutation p.S38L 0.65 tolerated_low_confidence(0.31) possibly_damaging(0.519) TCGA-19-5956-01 10 75832507 75832507 G T VCL Missense_Mutation p.K173N 0.09 deleterious(0.01) possibly_damaging(0.814) TCGA-19-5956-01 10 7605236 7605236 G A ITIH5 Missense_Mutation p.T880I 0.38 tolerated(0.06) benign(0.306) TCGA-19-5956-01 10 7618870 7618870 G A ITIH5 Silent p.N508N 0.55 TCGA-19-5956-01 10 76729526 76729526 G T KAT6B Missense_Mutation p.R280I 0.35 benign(0.255) TCGA-19-5956-01 10 76735836 76735836 G A KAT6B Missense_Mutation p.A581T 0.09 benign(0) TCGA-19-5956-01 10 76781864 76781864 G T KAT6B Nonsense_Mutation p.E1083* 0.31 TCGA-19-5956-01 10 76788723 76788723 G T KAT6B Missense_Mutation p.D1381Y 0.24 benign(0.169) TCGA-19-5956-01 10 76789151 76789151 C T KAT6B Silent p.V1523V 0.67 TCGA-19-5956-01 10 76789473 76789473 C T KAT6B Missense_Mutation p.P1631S 0.22 probably_damaging(0.998) TCGA-19-5956-01 10 7682791 7682791 G A ITIH5 Silent p.G109G 0.62 TCGA-19-5956-01 10 7768952 7768952 G A ITIH2 Missense_Mutation p.A342T 0.69 tolerated(0.52) benign(0.008) TCGA-19-5956-01 10 77818423 77818423 G T C10orf11 Splice_Site p.X105_splice 0.25 TCGA-19-5956-01 10 7797913 7797913 G T KIN 3'UTR 0.29 TCGA-19-5956-01 10 7844232 7844232 G T ATP5C1 Splice_Site p.X213_splice 0.22 TCGA-19-5956-01 10 78870096 78870096 C A KCNMA1 Missense_Mutation p.E322D 0.23 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 10 79397153 79397153 C T KCNMA1 Missense_Mutation p.G83D 0.19 tolerated(0.34) possibly_damaging(0.84) TCGA-19-5956-01 10 79601943 79601943 G A DLG5 Missense_Mutation p.A378V 0.19 tolerated(0.96) benign(0.006) TCGA-19-5956-01 10 79614086 79614086 G A DLG5 Silent p.I193I 0.27 TCGA-19-5956-01 10 79784754 79784754 G T POLR3A Silent p.I155I 0.25 TCGA-19-5956-01 10 81050719 81050719 C A ZMIZ1 Missense_Mutation p.L182I 0.60 probably_damaging(0.99) TCGA-19-5956-01 10 81060646 81060646 G A ZMIZ1 Missense_Mutation p.V656M 0.26 probably_damaging(0.999) TCGA-19-5956-01 10 81923835 81923835 C T ANXA11 Missense_Mutation p.R308Q 0.28 tolerated(0.3) benign(0.092) TCGA-19-5956-01 10 81929101 81929101 G T ANXA11 Missense_Mutation p.S62Y 0.09 tolerated(0.2) unknown(0) TCGA-19-5956-01 10 82043745 82043745 T C MAT1A Silent p.S73S 0.21 TCGA-19-5956-01 10 83635555 83635555 G T NRG3 Silent p.R153R 0.30 TCGA-19-5956-01 10 84718723 84718723 C T NRG3 Silent p.I392I 0.19 TCGA-19-5956-01 10 85968098 85968098 C T CDHR1 Missense_Mutation p.R378W 0.47 deleterious(0.01) probably_damaging(0.988) TCGA-19-5956-01 10 85973910 85973910 C A CDHR1 Missense_Mutation p.L705M 0.06 deleterious_low_confidence(0.01) probably_damaging(0.977) TCGA-19-5956-01 10 85974305 85974305 C T CDHR1 Silent p.V836V 0.37 TCGA-19-5956-01 10 85991840 85991840 A G LRIT1 Missense_Mutation p.V572A 0.25 deleterious(0) benign(0.41) TCGA-19-5956-01 10 86133444 86133444 G A CCSER2 Missense_Mutation p.G496D 0.42 deleterious(0.01) probably_damaging(0.928) TCGA-19-5956-01 10 86259668 86259668 G T CCSER2 Missense_Mutation p.G788V 0.19 deleterious(0.01) benign(0.319) TCGA-19-5956-01 10 87898744 87898744 C T GRID1 Silent p.S186S 0.29 TCGA-19-5956-01 10 88277452 88277452 T G WAPAL Missense_Mutation p.E125D 0.25 tolerated_low_confidence(0.55) benign(0.107) TCGA-19-5956-01 10 88421128 88421128 C A OPN4 Silent p.I363I 0.35 TCGA-19-5956-01 10 88446936 88446936 C T LDB3 Missense_Mutation p.A267V 0.24 tolerated(0.09) probably_damaging(0.978) TCGA-19-5956-01 10 88768623 88768623 A G RP11-96C23.10 3'Flank 0.09 TCGA-19-5956-01 10 88769648 88769648 G A RP11-96C23.10 RNA 0.20 TCGA-19-5956-01 10 88811618 88811618 G A GLUD1 Missense_Mutation p.R523C 0.35 tolerated(0.06) benign(0.005) TCGA-19-5956-01 10 88988126 88988126 G A NUTM2A Silent p.P163P 0.12 TCGA-19-5956-01 10 89624258 89624258 G T PTEN Missense_Mutation p.R11I 0.26 deleterious(0) benign(0.058) TCGA-19-5956-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.27 deleterious(0.02) probably_damaging(0.989) TCGA-19-5956-01 10 89720744 89720744 G T PTEN Nonsense_Mutation p.E299* 0.28 TCGA-19-5956-01 10 90341468 90341468 T G RNLS Splice_Site p.X75_splice 0.19 TCGA-19-5956-01 10 90429598 90429598 G T LIPF Missense_Mutation p.D153Y 0.15 deleterious(0) probably_damaging(1) TCGA-19-5956-01 10 90524269 90524269 C T LIPN Missense_Mutation p.A110V 0.48 deleterious(0.01) possibly_damaging(0.653) TCGA-19-5956-01 10 90773117 90773117 T C FAS Silent p.N223N 0.10 TCGA-19-5956-01 10 91066799 91066799 T C IFIT2 Silent p.S362S 0.45 TCGA-19-5956-01 10 91099662 91099662 A G IFIT3 Missense_Mutation p.Y417C 0.31 tolerated(0.18) benign(0.012) TCGA-19-5956-01 10 91143187 91143187 C T IFIT1B Silent p.I39I 0.33 TCGA-19-5956-01 10 91177581 91177581 A G IFIT5 Missense_Mutation p.T209A 0.33 tolerated(0.09) benign(0.002) TCGA-19-5956-01 10 91470894 91470894 A G KIF20B Missense_Mutation p.I223V 0.11 tolerated(0.21) benign(0.015) TCGA-19-5956-01 10 91522504 91522504 A G KIF20B Missense_Mutation p.K1594R 0.62 tolerated(0.16) benign(0.023) TCGA-19-5956-01 10 92509266 92509266 G T HTR7 Missense_Mutation p.L209I 0.23 tolerated(0.33) benign(0.326) TCGA-19-5956-01 10 93619266 93619266 C T TNKS2 Missense_Mutation p.H1048Y 0.38 tolerated(0.2) benign(0.006) TCGA-19-5956-01 10 93726495 93726495 T A BTAF1 Nonsense_Mutation p.L544* 0.10 TCGA-19-5956-01 10 93751928 93751928 T C BTAF1 Silent p.G969G 0.08 TCGA-19-5956-01 10 94110914 94110914 C T MARCH5 Nonsense_Mutation p.R263* 0.29 TCGA-19-5956-01 10 94774013 94774013 G T EXOC6 Missense_Mutation p.D720Y 0.25 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 10 94836801 94836801 G T CYP26A1 Nonsense_Mutation p.E412* 0.27 TCGA-19-5956-01 10 95111472 95111472 G T MYOF Missense_Mutation p.L1205I 0.19 tolerated(0.08) benign(0.008) TCGA-19-5956-01 10 95279527 95279527 G A CEP55 Missense_Mutation p.R385Q 0.27 deleterious(0.05) benign(0.02) TCGA-19-5956-01 10 95338934 95338934 G T FFAR4 Missense_Mutation p.D239Y 0.22 deleterious_low_confidence(0.02) benign(0.001) TCGA-19-5956-01 10 95394580 95394580 G T PDE6C Missense_Mutation p.K395N 0.26 tolerated(0.07) probably_damaging(1) TCGA-19-5956-01 10 95400709 95400709 C T PDE6C Silent p.L590L 0.28 TCGA-19-5956-01 10 95720466 95720466 C A PIPSL RNA 0.30 TCGA-19-5956-01 10 96006031 96006031 C T PLCE1 Missense_Mutation p.P917S 0.34 tolerated(0.39) benign(0.206) TCGA-19-5956-01 10 96030321 96030321 T C PLCE1 Missense_Mutation p.S1490P 0.34 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 10 96084297 96084297 C A PLCE1 Missense_Mutation p.F2231L 0.26 deleterious(0.03) possibly_damaging(0.843) TCGA-19-5956-01 10 96121593 96121593 A G NOC3L Silent p.L16L 0.56 TCGA-19-5956-01 10 96731868 96731868 A G CYP2C9 Missense_Mutation p.H276R 0.27 deleterious(0.03) benign(0.01) TCGA-19-5956-01 10 96745912 96745912 C A CYP2C9 Nonsense_Mutation p.Y424* 0.28 TCGA-19-5956-01 10 96748671 96748671 A G CYP2C9 Silent p.L453L 0.08 TCGA-19-5956-01 10 96967012 96967012 C T C10orf129 Missense_Mutation p.R151C 0.55 deleterious(0.04) benign(0.263) TCGA-19-5956-01 10 97804184 97804184 C A CCNJ Missense_Mutation p.L12M 0.28 tolerated(0.1) benign(0.43) TCGA-19-5956-01 10 97918283 97918283 G T ZNF518A RNA 0.70 TCGA-19-5956-01 10 97951622 97951622 T C BLNK 3'UTR 0.23 TCGA-19-5956-01 10 97966789 97966789 C A BLNK Missense_Mutation p.Q265H 0.25 deleterious(0.02) possibly_damaging(0.765) TCGA-19-5956-01 10 97987290 97987290 C T BLNK Silent p.S79S 0.31 TCGA-19-5956-01 10 98105875 98105875 C A OPALIN Splice_Site p.X84_splice 0.26 TCGA-19-5956-01 10 98287803 98287803 G A TM9SF3 Missense_Mutation p.A509V 0.10 tolerated(0.07) possibly_damaging(0.904) TCGA-19-5956-01 10 98742446 98742446 C T C10orf12 Silent p.V433V 0.29 TCGA-19-5956-01 10 98985884 98985884 G T ARHGAP19 Missense_Mutation p.L494I 0.66 tolerated_low_confidence(0.08) possibly_damaging(0.899) TCGA-19-5956-01 10 99349731 99349731 C T C10orf62 Missense_Mutation p.S26F 0.27 tolerated(0.72) benign(0.002) TCGA-19-5956-01 10 99358651 99358651 G A HOGA1 Missense_Mutation p.G111R 0.07 deleterious(0) probably_damaging(1) TCGA-19-5956-01 10 99512851 99512851 C T ZFYVE27 Silent p.N323N 0.20 TCGA-19-5956-01 10 99683051 99683051 G A CRTAC1 Silent p.A176A 0.26 TCGA-19-5956-01 11 100169929 100169929 C T CNTN5 Silent p.F807F 0.58 TCGA-19-5956-01 11 100863318 100863318 C T TMEM133 Silent p.L93L 0.08 TCGA-19-5956-01 11 101342947 101342947 C A TRPC6 Missense_Mutation p.G709V 0.28 tolerated(0.19) probably_damaging(1) TCGA-19-5956-01 11 101833753 101833753 T G KIAA1377 Missense_Mutation p.F663V 0.24 tolerated(0.41) benign(0.015) TCGA-19-5956-01 11 101868370 101868370 G T KIAA1377 Missense_Mutation p.R1117I 0.24 deleterious_low_confidence(0) possibly_damaging(0.883) TCGA-19-5956-01 11 102398628 102398628 G T MMP7 Missense_Mutation p.F65L 0.11 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 11 102562424 102562424 G T MMP27 3'UTR 0.24 TCGA-19-5956-01 11 102668065 102668065 C T MMP1 Missense_Mutation p.R91K 0.47 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 11 102706914 102706914 G A MMP3 Silent p.D459D 0.19 TCGA-19-5956-01 11 102991487 102991487 A C DYNC2H1 Missense_Mutation p.K402Q 0.47 possibly_damaging(0.885) TCGA-19-5956-01 11 102992120 102992120 G A DYNC2H1 Silent p.E460E 0.52 TCGA-19-5956-01 11 102992131 102992131 G A DYNC2H1 Missense_Mutation p.R464Q 0.56 benign(0.01) TCGA-19-5956-01 11 103033789 103033789 G T DYNC2H1 Missense_Mutation p.K1508N 0.08 probably_damaging(0.965) TCGA-19-5956-01 11 103033821 103033821 T C DYNC2H1 Missense_Mutation p.V1519A 0.22 benign(0.079) TCGA-19-5956-01 11 103048395 103048395 G A DYNC2H1 Silent p.A1995A 0.48 TCGA-19-5956-01 11 10327612 10327612 A G ADM Missense_Mutation p.D72G 0.22 deleterious(0.04) benign(0.028) TCGA-19-5956-01 11 103908667 103908667 G A DDI1 Missense_Mutation p.V373I 0.19 tolerated(0.08) benign(0.002) TCGA-19-5956-01 11 104821826 104821826 C A CASP4 Splice_Site p.X125_splice 0.07 TCGA-19-5956-01 11 104822630 104822630 G A CASP4 Missense_Mutation p.A122V 0.44 tolerated(0.07) benign(0.175) TCGA-19-5956-01 11 104900516 104900516 C T CASP1 Silent p.K246K 0.42 TCGA-19-5956-01 11 104905832 104905832 A G CASP1 Splice_Site p.X3_splice 0.19 TCGA-19-5956-01 11 10503720 10503720 G T AMPD3 Missense_Mutation p.Q188H 0.06 tolerated(0.06) possibly_damaging(0.553) TCGA-19-5956-01 11 10555597 10555597 C A RNF141 Nonsense_Mutation p.E37* 0.46 TCGA-19-5956-01 11 105880647 105880647 C T MSANTD4 Missense_Mutation p.R218Q 0.49 deleterious(0.03) probably_damaging(0.971) TCGA-19-5956-01 11 105924044 105924044 C T KBTBD3 Missense_Mutation p.V458I 0.49 tolerated(0.16) benign(0.31) TCGA-19-5956-01 11 105924511 105924511 G T KBTBD3 Missense_Mutation p.T302N 0.22 tolerated(0.27) benign(0.034) TCGA-19-5956-01 11 105950247 105950247 G T AASDHPPT Missense_Mutation p.W79C 0.25 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 11 106681131 106681131 A G GUCY1A2 Missense_Mutation p.V427A 0.19 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 11 107263622 107263622 C A CWF19L2 Splice_Site p.X540_splice 0.44 TCGA-19-5956-01 11 107676158 107676158 C T SLC35F2 Missense_Mutation p.V220M 0.45 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 10776696 10776696 G T CTR9 Missense_Mutation p.Q112H 0.06 deleterious(0.03) possibly_damaging(0.648) TCGA-19-5956-01 11 10787958 10787958 G A CTR9 Missense_Mutation p.R536H 0.19 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 11 107960289 107960289 G A CUL5 Missense_Mutation p.R461H 0.30 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 107960307 107960307 C A CUL5 Missense_Mutation p.S467Y 0.23 deleterious(0.05) probably_damaging(0.997) TCGA-19-5956-01 11 10821810 10821810 C T EIF4G2 Missense_Mutation p.R649H 0.26 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 11 10821895 10821895 C T EIF4G2 Missense_Mutation p.A621T 0.22 tolerated(0.09) possibly_damaging(0.63) TCGA-19-5956-01 11 10825483 10825483 A C EIF4G2 Missense_Mutation p.L222R 0.46 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 108380856 108380856 C T EXPH5 Missense_Mutation p.R1793H 0.21 deleterious(0.03) benign(0.063) TCGA-19-5956-01 11 108381089 108381089 A C EXPH5 Missense_Mutation p.N1715K 0.08 tolerated(0.13) benign(0.007) TCGA-19-5956-01 11 108382139 108382139 C T EXPH5 Silent p.E1365E 0.18 TCGA-19-5956-01 11 108383483 108383483 C A EXPH5 Silent p.S917S 0.23 TCGA-19-5956-01 11 108383618 108383618 G A EXPH5 Silent p.T872T 0.43 TCGA-19-5956-01 11 108544218 108544218 T A DDX10 Missense_Mutation p.F71I 0.18 deleterious(0) probably_damaging(0.914) TCGA-19-5956-01 11 1095325 1095325 G A MUC2 Missense_Mutation p.E2049K 0.27 unknown(0) TCGA-19-5956-01 11 1097816 1097816 C G MUC2 Missense_Mutation p.S2303R 0.22 unknown(0) TCGA-19-5956-01 11 110104186 110104186 C A RDX Missense_Mutation p.D455Y 0.24 deleterious(0.01) probably_damaging(0.992) TCGA-19-5956-01 11 110134722 110134722 G T RDX Missense_Mutation p.P144T 0.47 deleterious(0.05) benign(0.004) TCGA-19-5956-01 11 111368736 111368736 C A BTG4 Nonsense_Mutation p.E100* 0.23 TCGA-19-5956-01 11 111369364 111369364 C T BTG4 Nonsense_Mutation p.W46* 0.51 TCGA-19-5956-01 11 111594626 111594626 C A SIK2 Missense_Mutation p.P852T 0.31 deleterious_low_confidence(0) benign(0.146) TCGA-19-5956-01 11 111614156 111614156 C A PPP2R1B Missense_Mutation p.V500L 0.22 tolerated(0.17) benign(0.001) TCGA-19-5956-01 11 111747280 111747280 C A FDXACB1 Missense_Mutation p.R206I 0.11 tolerated(0.16) benign(0.118) TCGA-19-5956-01 11 111754546 111754546 C A C11orf1 Missense_Mutation p.P132H 0.12 deleterious(0.02) probably_damaging(0.983) TCGA-19-5956-01 11 111844953 111844953 C T DIXDC1 Missense_Mutation p.R175W 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 111908054 111908054 G T DLAT Missense_Mutation p.R282I 0.09 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 11 111916683 111916683 G T DLAT Nonsense_Mutation p.E463* 0.24 TCGA-19-5956-01 11 111933198 111933198 G A DLAT Missense_Mutation p.G628E 0.44 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 113073115 113073115 G A NCAM1 Missense_Mutation p.D82N 0.44 tolerated(0.21) benign(0.003) TCGA-19-5956-01 11 113105887 113105887 G A NCAM1 Splice_Site p.X658_splice 0.40 TCGA-19-5956-01 11 113186966 113186966 G A TTC12 Intron 0.09 TCGA-19-5956-01 11 113285181 113285181 G A DRD2 Silent p.G242G 0.25 TCGA-19-5956-01 11 113661125 113661125 A C ATF4P4 RNA 0.22 TCGA-19-5956-01 11 113661322 113661322 G A ATF4P4 RNA 0.38 TCGA-19-5956-01 11 113669933 113669933 A T USP28 3'UTR 0.10 TCGA-19-5956-01 11 113700141 113700141 G T USP28 Intron 0.17 TCGA-19-5956-01 11 113853859 113853859 C A HTR3A Missense_Mutation p.S137Y 0.22 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 11 113857470 113857470 C T HTR3A Silent p.S318S 0.22 TCGA-19-5956-01 11 113934216 113934216 G A ZBTB16 Missense_Mutation p.R65H 0.47 deleterious(0.01) possibly_damaging(0.907) TCGA-19-5956-01 11 114453633 114453633 T C NXPE4 Silent p.E69E 0.46 TCGA-19-5956-01 11 116661603 116661603 C T APOA5 Silent p.A114A 0.43 TCGA-19-5956-01 11 117870020 117870020 G A IL10RA Silent p.S467S 0.19 TCGA-19-5956-01 11 118007646 118007646 G T SCN4B 3'UTR 0.44 TCGA-19-5956-01 11 118243231 118243231 G T UBE4A Missense_Mutation p.V191F 0.41 tolerated(0.18) benign(0.068) TCGA-19-5956-01 11 118255605 118255605 G A UBE4A Missense_Mutation p.R793H 0.45 tolerated(0.07) probably_damaging(0.991) TCGA-19-5956-01 11 118342636 118342636 A C KMT2A Missense_Mutation p.K254N 0.06 probably_damaging(0.977) TCGA-19-5956-01 11 118373862 118373862 G A KMT2A Missense_Mutation p.E2419K 0.50 possibly_damaging(0.84) TCGA-19-5956-01 11 118375261 118375261 G T KMT2A Missense_Mutation p.G2885V 0.18 probably_damaging(1) TCGA-19-5956-01 11 118416513 118416513 A G IFT46 Missense_Mutation p.I294T 0.06 deleterious(0) possibly_damaging(0.474) TCGA-19-5956-01 11 118516283 118516283 A G PHLDB1 Missense_Mutation p.T1111A 0.13 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 11 118828378 118828378 C T UPK2 Nonsense_Mutation p.R140* 0.21 TCGA-19-5956-01 11 118919494 118919494 G A HYOU1 Silent p.I699I 0.24 TCGA-19-5956-01 11 119031360 119031360 A G ABCG4 Missense_Mutation p.Y570C 0.11 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 11 120008097 120008097 C T TRIM29 Missense_Mutation p.E215K 0.20 tolerated(0.13) benign(0.31) TCGA-19-5956-01 11 120338017 120338017 G A ARHGEF12 Missense_Mutation p.E952K 0.52 deleterious(0) possibly_damaging(0.807) TCGA-19-5956-01 11 120352192 120352192 T C ARHGEF12 Silent p.C1487C 0.25 TCGA-19-5956-01 11 120707541 120707541 C A GRIK4 Silent p.I244I 0.16 TCGA-19-5956-01 11 120776145 120776145 C T GRIK4 Silent p.Y473Y 0.22 TCGA-19-5956-01 11 120831667 120831667 G A GRIK4 Missense_Mutation p.A642T 0.44 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 11 120980051 120980051 G T TECTA Missense_Mutation p.E110D 0.51 tolerated(0.48) benign(0.004) TCGA-19-5956-01 11 120989110 120989110 G A TECTA Missense_Mutation p.E296K 0.36 tolerated(0.11) benign(0.017) TCGA-19-5956-01 11 120989171 120989171 C A TECTA Missense_Mutation p.A316D 0.22 deleterious(0) benign(0.004) TCGA-19-5956-01 11 121008551 121008551 C T TECTA Silent p.S1121S 0.40 TCGA-19-5956-01 11 121028673 121028673 C T TECTA Missense_Mutation p.R1477C 0.39 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 11 121033072 121033072 G T TECTA Missense_Mutation p.E1755D 0.38 tolerated(0.17) possibly_damaging(0.723) TCGA-19-5956-01 11 121367695 121367695 G T SORL1 Silent p.V292V 0.15 TCGA-19-5956-01 11 121391543 121391543 G A SORL1 Silent p.E463E 0.41 TCGA-19-5956-01 11 121458847 121458847 G A SORL1 Silent p.A1311A 0.08 TCGA-19-5956-01 11 121460056 121460056 C T SORL1 Silent p.D1345D 0.45 TCGA-19-5956-01 11 121986485 121986485 G A BLID Missense_Mutation p.A49V 0.51 tolerated_low_confidence(0.1) benign(0.002) TCGA-19-5956-01 11 12225944 12225944 C T MICAL2 Missense_Mutation p.R138C 0.46 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 122647849 122647849 G A UBASH3B Silent p.S111S 0.16 TCGA-19-5956-01 11 122650278 122650278 C T UBASH3B Missense_Mutation p.S159L 0.42 deleterious(0) benign(0.046) TCGA-19-5956-01 11 122795655 122795655 G T C11orf63 Missense_Mutation p.K305N 0.23 tolerated(0.21) benign(0.013) TCGA-19-5956-01 11 122805138 122805138 A C C11orf63 Missense_Mutation p.E330A 0.12 deleterious(0.01) possibly_damaging(0.713) TCGA-19-5956-01 11 123448160 123448160 G A GRAMD1B Missense_Mutation p.D37N 0.40 deleterious(0.03) benign(0.046) TCGA-19-5956-01 11 123471189 123471189 C T GRAMD1B Missense_Mutation p.S185L 0.18 deleterious(0) possibly_damaging(0.536) TCGA-19-5956-01 11 123676883 123676883 A C OR6M1 Missense_Mutation p.F59V 0.17 deleterious(0) possibly_damaging(0.64) TCGA-19-5956-01 11 123886381 123886381 G A OR10G4 Missense_Mutation p.V34M 0.13 tolerated(0.05) benign(0.042) TCGA-19-5956-01 11 123886506 123886506 G A OR10G4 Silent p.T75T 0.12 TCGA-19-5956-01 11 124120772 124120772 C T OR8G1 Missense_Mutation p.A117V 0.52 tolerated_low_confidence(0.55) benign(0.045) TCGA-19-5956-01 11 124120800 124120800 C A OR8G1 Silent p.I126I 0.24 TCGA-19-5956-01 11 124252608 124252608 C T OR8B2 Missense_Mutation p.S211N 0.43 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-19-5956-01 11 124267050 124267050 G T OR8B3 Silent p.L66L 0.17 TCGA-19-5956-01 11 124294128 124294128 C T OR8B4 Missense_Mutation p.V214I 0.46 deleterious_low_confidence(0.04) benign(0.001) TCGA-19-5956-01 11 124487294 124487294 C A PANX3 Missense_Mutation p.S150Y 0.49 deleterious(0.04) probably_damaging(0.998) TCGA-19-5956-01 11 124506746 124506746 C A SIAE 3'UTR 0.21 TCGA-19-5956-01 11 124620638 124620638 C T VSIG2 Silent p.G133G 0.11 TCGA-19-5956-01 11 124637273 124637273 G T MSANTD2 Missense_Mutation p.F441L 0.11 tolerated_low_confidence(0.14) probably_damaging(0.987) TCGA-19-5956-01 11 124766831 124766831 C T ROBO4 Missense_Mutation p.A133T 0.36 tolerated(0.15) benign(0.032) TCGA-19-5956-01 11 124805840 124805840 G T HEPACAM Silent p.V21V 0.15 TCGA-19-5956-01 11 124857411 124857411 A G CCDC15 Missense_Mutation p.D430G 0.07 tolerated(0.22) benign(0.024) TCGA-19-5956-01 11 124972181 124972181 G A TMEM218 5'UTR 0.40 TCGA-19-5956-01 11 125478166 125478166 G A STT3A Missense_Mutation p.A315T 0.16 tolerated(0.31) benign(0.007) TCGA-19-5956-01 11 125542373 125542373 G T ACRV1 3'UTR 0.47 TCGA-19-5956-01 11 125542516 125542516 C T ACRV1 Missense_Mutation p.R257Q 0.10 tolerated(0.07) possibly_damaging(0.875) TCGA-19-5956-01 11 1256357 1256357 C T MUC5B Silent p.C891C 0.32 TCGA-19-5956-01 11 125765461 125765461 C T PUS3 Missense_Mutation p.R201H 0.12 tolerated(0.09) benign(0.009) TCGA-19-5956-01 11 125765567 125765567 G A PUS3 Missense_Mutation p.R166W 0.12 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 11 125770201 125770201 A G HYLS1 3'UTR 0.10 TCGA-19-5956-01 11 125875795 125875795 G A CDON Silent p.N570N 0.25 TCGA-19-5956-01 11 125880415 125880415 C T CDON Missense_Mutation p.R458Q 0.28 tolerated(0.47) benign(0.037) TCGA-19-5956-01 11 126131350 126131350 G A FAM118B Missense_Mutation p.G338D 0.19 deleterious(0) benign(0.226) TCGA-19-5956-01 11 126147604 126147604 G A FOXRED1 3'UTR 0.20 TCGA-19-5956-01 11 126162451 126162451 G T TIRAP Missense_Mutation p.Q49H 0.09 tolerated(0.15) benign(0.003) TCGA-19-5956-01 11 126333075 126333075 G A KIRREL3 Missense_Mutation p.T240M 0.46 deleterious(0) possibly_damaging(0.858) TCGA-19-5956-01 11 1271112 1271112 C T MUC5B Silent p.T4334T 0.36 TCGA-19-5956-01 11 1272168 1272168 G A MUC5B Silent p.T4686T 0.47 TCGA-19-5956-01 11 128354827 128354827 C T ETS1 Silent p.S251S 0.35 TCGA-19-5956-01 11 128354926 128354926 C T ETS1 Silent p.E218E 0.44 TCGA-19-5956-01 11 128355978 128355978 G A ETS1 Missense_Mutation p.S200L 0.25 tolerated(0.09) probably_damaging(0.978) TCGA-19-5956-01 11 128680643 128680643 G A FLI1 Silent p.P373P 0.17 TCGA-19-5956-01 11 12883854 12883854 G T TEAD1 Missense_Mutation p.R87I 0.12 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 11 128843966 128843966 G T ARHGAP32 Intron 0.07 TCGA-19-5956-01 11 129321228 129321228 G T BARX2 Missense_Mutation p.E257D 0.08 tolerated_low_confidence(0.08) benign(0.007) TCGA-19-5956-01 11 129744781 129744781 G A NFRKB Missense_Mutation p.R654W 0.37 deleterious(0) unknown(0) TCGA-19-5956-01 11 129772239 129772239 C A PRDM10 Missense_Mutation p.G1151V 0.39 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-19-5956-01 11 129775605 129775605 C T PRDM10 Silent p.P1069P 0.10 TCGA-19-5956-01 11 129795067 129795067 G A PRDM10 Nonsense_Mutation p.Q534* 0.10 TCGA-19-5956-01 11 129802103 129802103 C T PRDM10 Missense_Mutation p.R394Q 0.52 deleterious(0.03) probably_damaging(0.99) TCGA-19-5956-01 11 130068486 130068486 G A ST14 Missense_Mutation p.D552N 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 130131241 130131241 G T ZBTB44 Silent p.V176V 0.47 TCGA-19-5956-01 11 130131341 130131341 G T ZBTB44 Missense_Mutation p.A143D 0.24 tolerated(0.11) benign(0.432) TCGA-19-5956-01 11 130784201 130784201 C T SNX19 Missense_Mutation p.S545N 0.23 tolerated(0.07) probably_damaging(0.983) TCGA-19-5956-01 11 130785811 130785811 C T SNX19 Silent p.P8P 0.15 TCGA-19-5956-01 11 132205137 132205137 C T NTM 3'UTR 0.29 TCGA-19-5956-01 11 132307199 132307199 C T OPCML Missense_Mutation p.R194Q 0.27 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 11 134027892 134027892 G A NCAPD3 Missense_Mutation p.R1369W 0.49 deleterious(0.01) possibly_damaging(0.677) TCGA-19-5956-01 11 134079291 134079291 G A NCAPD3 Silent p.I216I 0.12 TCGA-19-5956-01 11 134109911 134109911 G A VPS26B Missense_Mutation p.R136H 0.43 deleterious(0) probably_damaging(0.957) TCGA-19-5956-01 11 134121120 134121120 C A THYN1 Missense_Mutation p.K42N 0.20 tolerated(0.23) benign(0.013) TCGA-19-5956-01 11 134253911 134253911 C T B3GAT1 Missense_Mutation p.R95H 0.32 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 11 14287170 14287170 C A RP11-21L19.1 Intron 0.43 TCGA-19-5956-01 11 1467077 1467077 C T BRSK2 Missense_Mutation p.T435M 0.07 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 1472001 1472001 G A BRSK2 Missense_Mutation p.R537H 0.08 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 11 14880655 14880655 C A PDE3B Missense_Mutation p.L863I 0.07 tolerated(0.06) probably_damaging(0.999) TCGA-19-5956-01 11 14901997 14901997 A G CYP2R1 Missense_Mutation p.Y229H 0.10 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 11 14902193 14902193 T G CYP2R1 Missense_Mutation p.K163N 0.07 tolerated(0.31) benign(0.005) TCGA-19-5956-01 11 15212335 15212335 C T INSC Missense_Mutation p.A270V 0.39 tolerated(0.29) benign(0.045) TCGA-19-5956-01 11 15247266 15247266 C A INSC Missense_Mutation p.F401L 0.12 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 11 1619052 1619052 G A KRTAP5-2 Silent p.C143C 0.11 TCGA-19-5956-01 11 16811332 16811332 G A PLEKHA7 Missense_Mutation p.A1049V 0.49 tolerated(0.29) benign(0) TCGA-19-5956-01 11 16838474 16838475 - T PLEKHA7 Frame_Shift_Ins p.R580Kfs*74 0.10 TCGA-19-5956-01 11 17111301 17111301 G A PIK3C2A Missense_Mutation p.A1682V 0.45 deleterious(0) possibly_damaging(0.505) TCGA-19-5956-01 11 17134211 17134211 C T PIK3C2A Silent p.S1108S 0.25 TCGA-19-5956-01 11 17190781 17190781 T G PIK3C2A Missense_Mutation p.N170H 0.22 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 11 17323396 17323396 G T NUCB2 Missense_Mutation p.A120S 0.27 deleterious(0.03) benign(0.405) TCGA-19-5956-01 11 17519798 17519798 C T USH1C Missense_Mutation p.E801K 0.07 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-19-5956-01 11 17531265 17531265 A C USH1C Missense_Mutation p.F551V 0.47 tolerated_low_confidence(0.83) benign(0.008) TCGA-19-5956-01 11 17554873 17554873 G A USH1C Intron 0.25 TCGA-19-5956-01 11 1774601 1774601 G A CTSD 3'UTR 0.50 TCGA-19-5956-01 11 18051099 18051099 G A TPH1 Missense_Mutation p.R144C 0.12 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 11 18159075 18159075 G A MRGPRX3 Missense_Mutation p.G109D 0.44 deleterious(0.02) possibly_damaging(0.844) TCGA-19-5956-01 11 18194664 18194664 C A MRGPRX4 5'UTR 0.20 TCGA-19-5956-01 11 18231694 18231694 T G RP11-113D6.10 3'UTR 0.27 TCGA-19-5956-01 11 18487255 18487255 C T LDHAL6A Missense_Mutation p.R106C 0.44 tolerated(0.07) possibly_damaging(0.727) TCGA-19-5956-01 11 18500494 18500494 A C LDHAL6A 3'UTR 0.20 TCGA-19-5956-01 11 1857196 1857196 C T SYT8 Silent p.F127F 0.11 TCGA-19-5956-01 11 1858468 1858468 G A SYT8 Missense_Mutation p.R338Q 0.39 tolerated(0.1) benign(0.21) TCGA-19-5956-01 11 18636203 18636203 C T SPTY2D1 Missense_Mutation p.E540K 0.28 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 11 18636670 18636670 G A SPTY2D1 Missense_Mutation p.T384I 0.24 tolerated(0.16) possibly_damaging(0.507) TCGA-19-5956-01 11 18637457 18637457 C A SPTY2D1 Nonsense_Mutation p.E122* 0.22 TCGA-19-5956-01 11 19076931 19076931 C A MRGPRX2 3'UTR 0.56 TCGA-19-5956-01 11 19256582 19256582 C T E2F8 Missense_Mutation p.D159N 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 11 19258930 19258930 G A E2F8 Nonsense_Mutation p.R128* 0.10 TCGA-19-5956-01 11 1955226 1955226 G T TNNT3 Missense_Mutation p.Q118H 0.41 deleterious(0.01) probably_damaging(0.993) TCGA-19-5956-01 11 1972163 1972163 C T MRPL23 Missense_Mutation p.R18W 0.51 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 11 1973356 1973356 G T MRPL23 Splice_Site p.X47_splice 0.26 TCGA-19-5956-01 11 198230 198230 C T ODF3 Silent p.Y114Y 0.18 TCGA-19-5956-01 11 19864459 19864459 G T NAV2 Missense_Mutation p.R143I 0.53 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 11 19914048 19914048 C A NAV2 Missense_Mutation p.T303N 0.21 tolerated(0.26) benign(0) TCGA-19-5956-01 11 20673915 20673915 C T SLC6A5 Silent p.L717L 0.41 TCGA-19-5956-01 11 20948943 20948943 A C NELL1 Missense_Mutation p.Q283H 0.50 tolerated(0.24) possibly_damaging(0.617) TCGA-19-5956-01 11 20949966 20949966 A C NELL1 Missense_Mutation p.N313T 0.08 tolerated(0.45) benign(0.016) TCGA-19-5956-01 11 20959374 20959374 G A NELL1 Missense_Mutation p.R347Q 0.22 tolerated(0.1) benign(0.133) TCGA-19-5956-01 11 21596517 21596517 G T NELL1 Splice_Site p.X795_splice 0.38 TCGA-19-5956-01 11 2167666 2167666 C T INS-IGF2 3'Flank 0.40 TCGA-19-5956-01 11 2185580 2185580 G A TH Silent p.F490F 0.11 TCGA-19-5956-01 11 22294494 22294494 G T ANO5 Missense_Mutation p.D732Y 0.12 tolerated(0.07) probably_damaging(0.972) TCGA-19-5956-01 11 22646888 22646888 G T FANCF Missense_Mutation p.L157I 0.25 tolerated(0.29) benign(0.176) TCGA-19-5956-01 11 233167 233167 C T SIRT3 Silent p.P174P 0.44 TCGA-19-5956-01 11 2432642 2432642 G A TRPM5 Missense_Mutation p.R908W 0.19 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 11 26619912 26619912 C A ANO3 Missense_Mutation p.A483D 0.15 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 11 26677993 26677993 C A ANO3 Missense_Mutation p.L910I 0.20 tolerated(0.28) probably_damaging(0.999) TCGA-19-5956-01 11 26681884 26681884 C T ANO3 Nonsense_Mutation p.R947* 0.13 TCGA-19-5956-01 11 27389821 27389821 G A LGR4 Nonsense_Mutation p.R817* 0.13 TCGA-19-5956-01 11 27720971 27720971 G T BDNF Intron 0.47 TCGA-19-5956-01 11 28045339 28045339 G A KIF18A Nonsense_Mutation p.R855* 0.14 TCGA-19-5956-01 11 28311841 28311841 G A METTL15 Missense_Mutation p.V166I 0.13 tolerated(0.23) benign(0.042) TCGA-19-5956-01 11 293616 293616 C T ATHL1 Silent p.D501D 0.31 TCGA-19-5956-01 11 299333 299333 C T IFITM5 Missense_Mutation p.G53D 0.33 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 30033368 30033368 C A KCNA4 Missense_Mutation p.E286D 0.20 tolerated(0.19) benign(0.001) TCGA-19-5956-01 11 308307 308307 C T IFITM2 Missense_Mutation p.P39S 0.48 tolerated(0.11) possibly_damaging(0.493) TCGA-19-5956-01 11 31112938 31112938 A G DCDC1 Splice_Site p.X746_splice 0.36 TCGA-19-5956-01 11 32610174 32610174 A G EIF3M Silent p.L70L 0.30 TCGA-19-5956-01 11 32720835 32720835 C A CCDC73 Nonsense_Mutation p.E118* 0.32 TCGA-19-5956-01 11 32953929 32953929 C T QSER1 Silent p.N246N 0.22 TCGA-19-5956-01 11 32956090 32956090 C A QSER1 Missense_Mutation p.H967N 0.44 tolerated_low_confidence(0.14) benign(0.046) TCGA-19-5956-01 11 32956820 32956820 A G QSER1 Missense_Mutation p.N1210S 0.21 tolerated(0.89) benign(0.002) TCGA-19-5956-01 11 33050214 33050214 C A DEPDC7 Missense_Mutation p.L220I 0.44 deleterious(0.01) benign(0.162) TCGA-19-5956-01 11 33370095 33370095 C T HIPK3 Silent p.I799I 0.19 TCGA-19-5956-01 11 33565446 33565446 C T KIAA1549L Silent p.L482L 0.09 TCGA-19-5956-01 11 33631378 33631378 C T KIAA1549L Silent p.Y1418Y 0.37 TCGA-19-5956-01 11 3380781 3380781 C T ZNF195 Missense_Mutation p.R486K 0.41 tolerated(0.7) possibly_damaging(0.623) TCGA-19-5956-01 11 3381724 3381724 G T ZNF195 Missense_Mutation p.L172M 0.08 deleterious(0.03) benign(0.396) TCGA-19-5956-01 11 33886311 33886311 C T LMO2 Missense_Mutation p.G101S 0.16 tolerated(0.06) possibly_damaging(0.809) TCGA-19-5956-01 11 34162742 34162742 G A NAT10 Missense_Mutation p.R900H 0.09 deleterious(0) probably_damaging(0.95) TCGA-19-5956-01 11 34493102 34493102 A G CAT 3'UTR 0.64 TCGA-19-5956-01 11 34501726 34501726 G T ELF5 3'UTR 0.53 TCGA-19-5956-01 11 34938317 34938317 C T PDHX Missense_Mutation p.R39C 0.53 deleterious(0.04) possibly_damaging(0.518) TCGA-19-5956-01 11 34988319 34988319 T G PDHX Silent p.P258P 0.20 TCGA-19-5956-01 11 35308318 35308318 C A SLC1A2 Missense_Mutation p.Q424H 0.16 deleterious(0.02) probably_damaging(0.996) TCGA-19-5956-01 11 35308426 35308426 G A SLC1A2 Silent p.F388F 0.41 TCGA-19-5956-01 11 35515711 35515711 G A PAMR1 Silent p.V61V 0.48 TCGA-19-5956-01 11 35685125 35685125 G T TRIM44 Nonsense_Mutation p.E156* 0.12 TCGA-19-5956-01 11 36250755 36250755 G A LDLRAD3 Silent p.T282T 0.21 TCGA-19-5956-01 11 36511925 36511925 G A TRAF6 Silent p.I344I 0.44 TCGA-19-5956-01 11 36597912 36597912 A G RAG1 Missense_Mutation p.N1020D 0.23 tolerated_low_confidence(1) benign(0.021) TCGA-19-5956-01 11 36631756 36631756 G T C11orf74 Nonsense_Mutation p.E35* 0.50 TCGA-19-5956-01 11 3688596 3688596 G A CHRNA10 Missense_Mutation p.A254V 0.29 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 11 3700842 3700842 G T NUP98 Missense_Mutation p.S1672Y 0.19 deleterious(0) possibly_damaging(0.904) TCGA-19-5956-01 11 3712671 3712671 G T NUP98 Missense_Mutation p.L1454M 0.08 tolerated(0.2) possibly_damaging(0.783) TCGA-19-5956-01 11 396989 396989 C T PKP3 Missense_Mutation p.S163F 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 11 4104120 4104120 G T STIM1 Missense_Mutation p.K382N 0.10 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 11 43775609 43775609 G A HSD17B12 Missense_Mutation p.G74E 0.48 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 11 44074277 44074277 G A ACCSL Missense_Mutation p.V280I 0.22 tolerated(0.15) benign(0.203) TCGA-19-5956-01 11 4510732 4510732 G A OR52K1 Missense_Mutation p.G201D 0.52 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 4511026 4511026 A G OR52K1 Missense_Mutation p.K299R 0.20 tolerated(0.09) benign(0.162) TCGA-19-5956-01 11 45117395 45117395 C T PRDM11 Silent p.I13I 0.47 TCGA-19-5956-01 11 45246310 45246310 G T PRDM11 Missense_Mutation p.D429Y 0.05 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-19-5956-01 11 45274125 45274125 C A SYT13 Missense_Mutation p.E231D 0.08 tolerated(0.11) benign(0.015) TCGA-19-5956-01 11 45274243 45274243 T C SYT13 Missense_Mutation p.D192G 0.14 tolerated(0.05) probably_damaging(0.928) TCGA-19-5956-01 11 45928226 45928226 G T C11orf94 Missense_Mutation p.P64H 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 45971760 45971760 C A PHF21A Nonsense_Mutation p.E381* 0.17 TCGA-19-5956-01 11 46098350 46098350 C T PHF21A Silent p.Q36Q 0.35 TCGA-19-5956-01 11 4621437 4621437 G A TRIM68 3'UTR 0.29 TCGA-19-5956-01 11 4621656 4621656 G T TRIM68 Missense_Mutation p.F436L 0.50 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 11 46564629 46564629 C T AMBRA1 Intron 0.15 TCGA-19-5956-01 11 4661273 4661273 G T OR51D1 Missense_Mutation p.V85F 0.08 deleterious(0.02) benign(0.365) TCGA-19-5956-01 11 46727033 46727033 C T ZNF408 Missense_Mutation p.R595W 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 46774990 46774990 T C CKAP5 Missense_Mutation p.M1643V 0.07 tolerated(0.32) benign(0.119) TCGA-19-5956-01 11 46785091 46785091 T G CKAP5 Missense_Mutation p.Q1209H 0.17 tolerated(0.11) benign(0.329) TCGA-19-5956-01 11 46911554 46911554 C T LRP4 Missense_Mutation p.R678H 0.18 tolerated(1) benign(0.008) TCGA-19-5956-01 11 47355191 47355191 C T MYBPC3 Missense_Mutation p.R1036H 0.11 deleterious(0.04) benign(0.005) TCGA-19-5956-01 11 47370034 47370034 C T MYBPC3 Missense_Mutation p.R238H 0.56 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 47444511 47444511 A C PSMC3 Missense_Mutation p.I202S 0.08 deleterious(0) possibly_damaging(0.707) TCGA-19-5956-01 11 47469685 47469685 G A RAPSN Silent p.I70I 0.11 TCGA-19-5956-01 11 47493633 47493633 G A CELF1 Intron 0.12 TCGA-19-5956-01 11 47510540 47510540 G A CELF1 Silent p.D36D 0.07 TCGA-19-5956-01 11 47599146 47599146 G A KBTBD4 Missense_Mutation p.R152W 0.41 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 11 47806522 47806522 G T NUP160 Silent p.L1314L 0.17 TCGA-19-5956-01 11 47857256 47857256 G A NUP160 Missense_Mutation p.P350S 0.38 tolerated(0.89) benign(0.002) TCGA-19-5956-01 11 48134396 48134396 G T PTPRJ Missense_Mutation p.Q71H 0.26 tolerated(0.13) benign(0.025) TCGA-19-5956-01 11 48161228 48161228 G A PTPRJ Silent p.T781T 0.08 TCGA-19-5956-01 11 4825705 4825705 G T OR52R1 5'Flank 0.24 TCGA-19-5956-01 11 48266740 48266740 G A OR4X2 Missense_Mutation p.A29T 0.50 tolerated(0.07) possibly_damaging(0.489) TCGA-19-5956-01 11 48266964 48266964 G T OR4X2 Missense_Mutation p.E103D 0.40 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 11 48267561 48267561 G T OR4X2 Missense_Mutation p.E302D 0.36 tolerated(0.46) benign(0.312) TCGA-19-5956-01 11 48347166 48347166 T C OR4C3 Missense_Mutation p.V225A 0.22 tolerated(0.93) possibly_damaging(0.529) TCGA-19-5956-01 11 49175478 49175478 A C FOLH1 Missense_Mutation p.D630E 0.16 tolerated(0.22) benign(0.008) TCGA-19-5956-01 11 49207254 49207254 C T FOLH1 Missense_Mutation p.G265R 0.32 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 4936720 4936720 G A OR51G2 Silent p.R58R 0.23 TCGA-19-5956-01 11 4945207 4945207 G T OR51G1 Silent p.S121S 0.41 TCGA-19-5956-01 11 4968292 4968292 G T OR51A4 Silent p.T13T 0.11 TCGA-19-5956-01 11 498810 498810 C T RNH1 Silent p.E246E 0.20 TCGA-19-5956-01 11 5020614 5020614 C T OR51L1 Silent p.Y134Y 0.41 TCGA-19-5956-01 11 5068526 5068526 C T OR52J3 Silent p.V257V 0.40 TCGA-19-5956-01 11 5080387 5080387 G A OR52E2 Silent p.F157F 0.32 TCGA-19-5956-01 11 51411480 51411480 A T OR4A5 Missense_Mutation p.F306I 0.26 tolerated_low_confidence(0.18) benign(0.004) TCGA-19-5956-01 11 5173386 5173386 C A OR52A1 Missense_Mutation p.D72Y 0.40 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 11 5274594 5274594 G A HBG2 Silent p.F119F 0.16 TCGA-19-5956-01 11 5322760 5322760 C T OR51B4 Missense_Mutation p.M139I 0.46 tolerated(0.63) benign(0.004) TCGA-19-5956-01 11 5410691 5410691 C A OR51M1 Missense_Mutation p.S21R 0.10 deleterious(0.05) benign(0.006) TCGA-19-5956-01 11 5411062 5411062 C T OR51M1 Missense_Mutation p.S145L 0.42 deleterious(0.02) benign(0.006) TCGA-19-5956-01 11 5510162 5510162 C T OR52D1 Missense_Mutation p.L76F 0.10 deleterious(0.01) possibly_damaging(0.807) TCGA-19-5956-01 11 55110853 55110853 C A OR4A16 Missense_Mutation p.F59L 0.18 deleterious_low_confidence(0.05) benign(0.077) TCGA-19-5956-01 11 5528886 5528886 G T UBQLN3 Missense_Mutation p.L635I 0.09 tolerated(0.09) probably_damaging(0.999) TCGA-19-5956-01 11 55340260 55340260 C A OR4C16 Missense_Mutation p.F219L 0.41 deleterious(0) benign(0) TCGA-19-5956-01 11 55370915 55370915 A C OR4C11 3'UTR 0.52 TCGA-19-5956-01 11 5537477 5537477 G A UBQLNL Silent p.C65C 0.25 TCGA-19-5956-01 11 55418437 55418437 G T OR4S2 Nonsense_Mutation p.E20* 0.46 TCGA-19-5956-01 11 55541548 55541548 G T OR5D13 Missense_Mutation p.S212I 0.16 deleterious(0.01) probably_damaging(0.934) TCGA-19-5956-01 11 55587531 55587531 C T OR5D18 Silent p.C142C 0.22 TCGA-19-5956-01 11 55588038 55588038 C A OR5D18 Missense_Mutation p.F311L 0.21 tolerated(0.58) benign(0.008) TCGA-19-5956-01 11 55653089 55653089 G A TRIM51 Missense_Mutation p.R62K 0.37 tolerated(0.75) possibly_damaging(0.589) TCGA-19-5956-01 11 55653101 55653101 C T TRIM51 Missense_Mutation p.T66I 0.40 deleterious(0.04) benign(0.111) TCGA-19-5956-01 11 55658855 55658855 A G TRIM51 Missense_Mutation p.D369G 0.41 tolerated(0.68) benign(0.033) TCGA-19-5956-01 11 55681783 55681783 T G OR5W2 Silent p.I92I 0.13 TCGA-19-5956-01 11 55735856 55735856 C T OR10AG1 Missense_Mutation p.M28I 0.42 tolerated(1) benign(0) TCGA-19-5956-01 11 55861411 55861411 C A OR8I2 Missense_Mutation p.L210I 0.11 tolerated(0.08) possibly_damaging(0.762) TCGA-19-5956-01 11 55861503 55861503 C T OR8I2 Silent p.C240C 0.53 TCGA-19-5956-01 11 558740 558740 C T C11orf35 Missense_Mutation p.R62H 0.20 tolerated(0.14) possibly_damaging(0.828) TCGA-19-5956-01 11 55890030 55890031 - T OR8H3 Frame_Shift_Ins p.L64Pfs*8 0.20 TCGA-19-5956-01 11 55890615 55890615 T G OR8H3 Missense_Mutation p.I256S 0.22 deleterious(0.04) benign(0.038) TCGA-19-5956-01 11 56000442 56000442 A G OR5T2 Missense_Mutation p.Y74H 0.19 deleterious(0) benign(0.228) TCGA-19-5956-01 11 5602188 5602188 C T OR52B6 Missense_Mutation p.R28C 0.18 tolerated(0.13) benign(0.003) TCGA-19-5956-01 11 56057809 56057809 G T OR8H1 Missense_Mutation p.L244I 0.20 deleterious(0.04) benign(0.4) TCGA-19-5956-01 11 56058087 56058087 C A OR8H1 Missense_Mutation p.S151I 0.23 deleterious(0) possibly_damaging(0.507) TCGA-19-5956-01 11 56058126 56058126 C A OR8H1 Missense_Mutation p.R138M 0.56 deleterious(0.02) possibly_damaging(0.541) TCGA-19-5956-01 11 56086200 56086200 G A OR8K3 Missense_Mutation p.V140I 0.22 tolerated_low_confidence(0.1) benign(0.087) TCGA-19-5956-01 11 56113859 56113859 C T OR8K1 Silent p.I115I 0.54 TCGA-19-5956-01 11 56113897 56113897 G A OR8K1 Missense_Mutation p.R128H 0.43 tolerated_low_confidence(0.05) benign(0.224) TCGA-19-5956-01 11 56127762 56127762 C A OR8J1 Missense_Mutation p.L14I 0.43 deleterious(0) possibly_damaging(0.786) TCGA-19-5956-01 11 56230549 56230549 A G OR5M9 Missense_Mutation p.V110A 0.22 tolerated(0.38) benign(0.006) TCGA-19-5956-01 11 5625844 5625844 G A TRIM6 Silent p.K196K 0.10 TCGA-19-5956-01 11 56345020 56345020 A G OR5M10 Missense_Mutation p.Y60H 0.38 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 56954855 56954855 C T LRRC55 Silent p.F309F 0.21 TCGA-19-5956-01 11 57076417 57076417 C T TNKS1BP1 Silent p.G1256G 0.45 TCGA-19-5956-01 11 57077045 57077045 C A TNKS1BP1 Missense_Mutation p.S1047I 0.36 deleterious(0.01) benign(0.106) TCGA-19-5956-01 11 57093927 57093927 C T SSRP1 Missense_Mutation p.S695N 0.21 tolerated(0.07) unknown(0) TCGA-19-5956-01 11 57097817 57097817 C A SSRP1 Missense_Mutation p.K461N 0.18 deleterious(0.01) possibly_damaging(0.84) TCGA-19-5956-01 11 57101976 57101976 C A SSRP1 Missense_Mutation p.K67N 0.05 tolerated(0.16) benign(0.013) TCGA-19-5956-01 11 57137445 57137445 C T P2RX3 Missense_Mutation p.S390L 0.29 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 11 57156148 57156148 C T PRG2 Missense_Mutation p.V134I 0.06 tolerated(0.32) benign(0.067) TCGA-19-5956-01 11 57156498 57156498 C T RP11-872D17.8 Silent p.T222T 0.15 TCGA-19-5956-01 11 5717676 5717676 C T TRIM22 Missense_Mutation p.R72W 0.22 tolerated(0.07) benign(0.006) TCGA-19-5956-01 11 5730331 5730331 C A TRIM22 Missense_Mutation p.S317Y 0.34 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 5730613 5730613 G T TRIM22 Missense_Mutation p.G411V 0.18 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 11 57367377 57367377 C A SERPING1 Missense_Mutation p.A26D 0.11 tolerated_low_confidence(0.36) possibly_damaging(0.665) TCGA-19-5956-01 11 57466809 57466809 C T ZDHHC5 Missense_Mutation p.S634L 0.14 deleterious(0) benign(0.01) TCGA-19-5956-01 11 57958686 57958686 G A OR9Q2 Missense_Mutation p.A242T 0.46 tolerated(0.23) benign(0.055) TCGA-19-5956-01 11 57971105 57971105 G A OR1S2 Silent p.D183D 0.38 TCGA-19-5956-01 11 57982633 57982633 C A OR1S1 Silent p.I139I 0.08 TCGA-19-5956-01 11 58035174 58035174 A C OR10W1 Missense_Mutation p.F53V 0.25 deleterious(0) benign(0.437) TCGA-19-5956-01 11 58035403 58035403 A C OR10W1 5'UTR 0.63 TCGA-19-5956-01 11 58125604 58125604 G T OR5B17 Silent p.V313V 0.18 TCGA-19-5956-01 11 58126075 58126075 G A OR5B17 Silent p.I156I 0.45 TCGA-19-5956-01 11 58274975 58274975 A C OR5B21 Missense_Mutation p.F202V 0.23 deleterious_low_confidence(0.01) possibly_damaging(0.904) TCGA-19-5956-01 11 58343319 58343319 G A LPXN Intron 0.21 TCGA-19-5956-01 11 58384234 58384234 G A ZFP91 Missense_Mutation p.S383N 0.47 deleterious(0) probably_damaging(0.935) TCGA-19-5956-01 11 58385262 58385263 - A ZFP91 3'UTR 0.11 TCGA-19-5956-01 11 58391590 58391590 G A CNTF Silent p.E66E 0.59 TCGA-19-5956-01 11 58391709 58391709 A G CNTF Missense_Mutation p.H106R 0.16 tolerated(0.25) probably_damaging(1) TCGA-19-5956-01 11 58477389 58477389 G T GLYAT Silent p.I247I 0.08 TCGA-19-5956-01 11 58477957 58477957 C T GLYAT Intron 0.12 TCGA-19-5956-01 11 5862194 5862194 C T OR52E6 Missense_Mutation p.D312N 0.48 tolerated_low_confidence(0.32) benign(0.002) TCGA-19-5956-01 11 58723568 58723568 A C GLYATL1 3'UTR 0.38 TCGA-19-5956-01 11 5878602 5878602 G A OR52E8 Missense_Mutation p.H111Y 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 11 58891878 58891878 C T FAM111B Missense_Mutation p.P103L 0.51 tolerated(0.34) benign(0.001) TCGA-19-5956-01 11 58920938 58920938 T C FAM111A Silent p.N599N 0.19 TCGA-19-5956-01 11 59132522 59132522 G T OR5AN1 Missense_Mutation p.Q197H 0.20 tolerated(0.07) benign(0.073) TCGA-19-5956-01 11 59190174 59190174 C A OR5A2 Missense_Mutation p.D85Y 0.13 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 11 59245249 59245249 C T OR4D10 Missense_Mutation p.S116L 0.24 tolerated(0.06) benign(0.009) TCGA-19-5956-01 11 59282858 59282858 C T OR4D9 Missense_Mutation p.A158V 0.46 tolerated(1) benign(0.001) TCGA-19-5956-01 11 59425054 59425054 G A PATL1 Silent p.V190V 0.20 TCGA-19-5956-01 11 59622193 59622193 A G TCN1 Silent p.T351T 0.24 TCGA-19-5956-01 11 59814439 59814439 G T OOSP2 Missense_Mutation p.V124F 0.45 tolerated(0.07) probably_damaging(0.952) TCGA-19-5956-01 11 59939630 59939630 C A MS4A6A 3'Flank 0.07 TCGA-19-5956-01 11 60156960 60156960 C A MS4A7 Missense_Mutation p.S146Y 0.19 tolerated(0.07) probably_damaging(0.972) TCGA-19-5956-01 11 60198300 60198300 T A MS4A5 Missense_Mutation p.F62Y 0.40 deleterious(0.01) probably_damaging(0.981) TCGA-19-5956-01 11 60474503 60474503 C A MS4A8 Missense_Mutation p.P129T 0.41 deleterious(0.02) probably_damaging(0.986) TCGA-19-5956-01 11 6048655 6048655 A G OR56A1 Missense_Mutation p.Y94H 0.14 deleterious(0) benign(0.016) TCGA-19-5956-01 11 60889086 60889086 T G CD5 Missense_Mutation p.F270C 0.21 deleterious(0) probably_damaging(0.983) TCGA-19-5956-01 11 60889151 60889151 C T CD5 Missense_Mutation p.R292C 0.59 deleterious(0.03) probably_damaging(0.994) TCGA-19-5956-01 11 61018849 61018849 A G PGA5 3'UTR 0.16 TCGA-19-5956-01 11 61068352 61068352 C T DDB1 Missense_Mutation p.D1090N 0.18 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 11 61099112 61099112 C A DDB1 Missense_Mutation p.R38I 0.14 deleterious(0) benign(0.306) TCGA-19-5956-01 11 61105519 61105519 C T DAK Missense_Mutation p.A37V 0.15 tolerated(1) benign(0.023) TCGA-19-5956-01 11 61113405 61113405 C A DAK Missense_Mutation p.T521N 0.29 tolerated(0.57) benign(0.102) TCGA-19-5956-01 11 61291409 61291409 C T SYT7 Missense_Mutation p.S341N 0.43 tolerated(0.07) benign(0.07) TCGA-19-5956-01 11 61318877 61318877 C T SYT7 Missense_Mutation p.R65H 0.43 deleterious_low_confidence(0) possibly_damaging(0.715) TCGA-19-5956-01 11 61584149 61584149 G A FADS1 Missense_Mutation p.R85C 0.20 deleterious(0) possibly_damaging(0.901) TCGA-19-5956-01 11 61608179 61608179 C T FADS2 Silent p.F200F 0.21 TCGA-19-5956-01 11 61644375 61644375 C T FADS3 Missense_Mutation p.G316S 0.19 deleterious(0.01) possibly_damaging(0.52) TCGA-19-5956-01 11 61646236 61646236 G A FADS3 Silent p.F202F 0.23 TCGA-19-5956-01 11 61729980 61729980 G A BEST1 Missense_Mutation p.A392T 0.45 tolerated(0.15) benign(0.032) TCGA-19-5956-01 11 619176 619176 G A CDHR5 Silent p.V461V 0.29 TCGA-19-5956-01 11 6220716 6220716 C T OR52W1 Missense_Mutation p.A88V 0.44 deleterious(0.04) benign(0.019) TCGA-19-5956-01 11 6220740 6220740 C A OR52W1 Missense_Mutation p.S96Y 0.24 deleterious(0) benign(0.185) TCGA-19-5956-01 11 62288413 62288413 C A AHNAK Missense_Mutation p.E4492D 0.21 benign(0.03) TCGA-19-5956-01 11 62300962 62300962 C A AHNAK Missense_Mutation p.M309I 0.24 benign(0.193) TCGA-19-5956-01 11 62343395 62343395 G T TUT1 Missense_Mutation p.S637Y 0.21 tolerated(0.06) probably_damaging(0.957) TCGA-19-5956-01 11 62361800 62361800 G A MTA2 Missense_Mutation p.A591V 0.29 tolerated_low_confidence(1) benign(0) TCGA-19-5956-01 11 62365580 62365580 C T MTA2 Missense_Mutation p.V136M 0.47 tolerated(0.06) probably_damaging(0.975) TCGA-19-5956-01 11 62378702 62378702 G A EML3 Silent p.S103S 0.17 TCGA-19-5956-01 11 62393601 62393601 G T GANAB Silent p.I909I 0.12 TCGA-19-5956-01 11 62414599 62414599 G T INTS5 Missense_Mutation p.L985M 0.23 tolerated(0.1) benign(0.282) TCGA-19-5956-01 11 62433197 62433197 T C METTL12 5'UTR 0.22 TCGA-19-5956-01 11 62439475 62439475 G T C11orf83 Missense_Mutation p.Q57H 0.27 tolerated(0.07) benign(0.1) TCGA-19-5956-01 11 62549367 62549367 T C TAF6L Missense_Mutation p.V178A 0.20 tolerated(0.13) benign(0.066) TCGA-19-5956-01 11 62567918 62567918 T G NXF1 Missense_Mutation p.K316T 0.41 deleterious(0) possibly_damaging(0.883) TCGA-19-5956-01 11 6261854 6261854 C T CNGA4 Missense_Mutation p.A277V 0.26 tolerated(0.16) possibly_damaging(0.6) TCGA-19-5956-01 11 63072177 63072177 G T SLC22A10 Missense_Mutation p.D472Y 0.45 tolerated(0.09) benign(0.043) TCGA-19-5956-01 11 63174018 63174018 C T SLC22A9 Silent p.L375L 0.42 TCGA-19-5956-01 11 63304301 63304301 C A RARRES3 5'UTR 0.54 TCGA-19-5956-01 11 63327632 63327632 C A HRASLS2 Nonsense_Mutation p.E15* 0.24 TCGA-19-5956-01 11 63396794 63396794 T C ATL3 Silent p.Q541Q 0.08 TCGA-19-5956-01 11 63487146 63487146 C A RTN3 Missense_Mutation p.S391Y 0.15 deleterious_low_confidence(0) probably_damaging(0.963) TCGA-19-5956-01 11 63487629 63487629 C A RTN3 Missense_Mutation p.S552Y 0.21 deleterious(0.01) benign(0.025) TCGA-19-5956-01 11 64128610 64128610 G A RPS6KA4 Missense_Mutation p.G156D 0.23 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 11 6424988 6424988 G T APBB1 Silent p.V262V 0.20 TCGA-19-5956-01 11 6432035 6432035 C A APBB1 Missense_Mutation p.E181D 0.53 tolerated(0.27) benign(0.001) TCGA-19-5956-01 11 64329581 64329581 C T SLC22A11 Silent p.F201F 0.50 TCGA-19-5956-01 11 64337292 64337292 A G SLC22A11 Silent p.G517G 0.47 TCGA-19-5956-01 11 64453186 64453186 C A NRXN2 Nonsense_Mutation p.E362* 0.09 TCGA-19-5956-01 11 64514146 64514146 C A PYGM Silent p.P838P 0.18 TCGA-19-5956-01 11 64563977 64563977 G T MAP4K2 Missense_Mutation p.L541M 0.30 tolerated(1) benign(0.224) TCGA-19-5956-01 11 64665598 64665598 G A ATG2A Silent p.A1606A 0.12 TCGA-19-5956-01 11 64677562 64677562 C T ATG2A Missense_Mutation p.A605T 0.19 tolerated(0.13) benign(0.002) TCGA-19-5956-01 11 64694254 64694254 C A PPP2R5B Missense_Mutation p.F90L 0.06 deleterious(0) probably_damaging(0.914) TCGA-19-5956-01 11 6470404 6470404 C T TRIM3 Missense_Mutation p.D697N 0.11 tolerated(0.13) probably_damaging(0.998) TCGA-19-5956-01 11 6472197 6472197 C T TRIM3 Missense_Mutation p.V599I 0.18 tolerated(0.31) benign(0.171) TCGA-19-5956-01 11 64973980 64973980 C T CAPN1 Missense_Mutation p.A467V 0.13 tolerated(0.49) benign(0.099) TCGA-19-5956-01 11 6499399 6499399 C T ARFIP2 Silent p.Q189Q 0.47 TCGA-19-5956-01 11 65266372 65266372 A T MALAT1 RNA 0.21 TCGA-19-5956-01 11 65273241 65273241 C A MALAT1 RNA 0.08 TCGA-19-5956-01 11 65350927 65350927 G T EHBP1L1 Missense_Mutation p.E928D 0.18 tolerated(0.1) benign(0.039) TCGA-19-5956-01 11 65417935 65417935 G T SIPA1 Missense_Mutation p.Q989H 0.14 tolerated(0.11) probably_damaging(0.986) TCGA-19-5956-01 11 65482041 65482041 G A KAT5 Missense_Mutation p.D256N 0.27 deleterious(0.04) possibly_damaging(0.481) TCGA-19-5956-01 11 65632610 65632610 G T MUS81 Missense_Mutation p.K465N 0.13 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 11 65650865 65650865 G T CTSW Missense_Mutation p.K330N 0.05 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 11 65651070 65651070 G A CTSW Missense_Mutation p.R371Q 0.11 tolerated(0.77) benign(0.001) TCGA-19-5956-01 11 65745103 65745103 T C SART1 Missense_Mutation p.V672A 0.21 tolerated(0.77) benign(0.265) TCGA-19-5956-01 11 65831174 65831174 G A SF3B2 Silent p.K768K 0.56 TCGA-19-5956-01 11 66029363 66029363 G A KLC2 Missense_Mutation p.V127M 0.58 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 11 66050827 66050827 C A CNIH2 Silent p.A140A 0.10 TCGA-19-5956-01 11 66062536 66062536 C T TMEM151A Silent p.F273F 0.19 TCGA-19-5956-01 11 66131778 66131778 C T SLC29A2 Missense_Mutation p.D393N 0.25 deleterious(0) probably_damaging(0.926) TCGA-19-5956-01 11 66136563 66136563 G T SLC29A2 Missense_Mutation p.S128Y 0.29 tolerated(0.13) possibly_damaging(0.486) TCGA-19-5956-01 11 66191533 66191533 C A NPAS4 Missense_Mutation p.P391H 0.45 deleterious(0.02) benign(0.299) TCGA-19-5956-01 11 66204907 66204907 C A MRPL11 Missense_Mutation p.R76M 0.16 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 6623400 6623400 C T RRP8 Missense_Mutation p.A49T 0.16 deleterious_low_confidence(0) possibly_damaging(0.798) TCGA-19-5956-01 11 6630751 6630751 C T ILK Missense_Mutation p.S246L 0.23 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 11 66329577 66329577 G A CTSF 3'Flank 0.12 TCGA-19-5956-01 11 66358296 66358296 G A CCDC87 Missense_Mutation p.R731W 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 66392070 66392070 G A RBM14 Silent p.P241P 0.23 TCGA-19-5956-01 11 66393136 66393136 G A RBM14 Missense_Mutation p.A597T 0.25 tolerated(0.8) unknown(0) TCGA-19-5956-01 11 66410966 66410966 C T RBM14-RBM4 Missense_Mutation p.A128V 0.37 tolerated(0.09) benign(0.23) TCGA-19-5956-01 11 6644496 6644496 G A DCHS1 Missense_Mutation p.T2804I 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-19-5956-01 11 66458820 66458820 C T SPTBN2 Missense_Mutation p.A1834T 0.15 tolerated(1) benign(0.002) TCGA-19-5956-01 11 66460732 66460732 G T SPTBN2 Missense_Mutation p.F1593L 0.51 deleterious(0.03) probably_damaging(0.991) TCGA-19-5956-01 11 6646519 6646519 A G DCHS1 Silent p.H2352H 0.25 TCGA-19-5956-01 11 6647266 6647266 T G DCHS1 Missense_Mutation p.I2206L 0.31 tolerated(0.21) benign(0.004) TCGA-19-5956-01 11 66611770 66611770 G A RCE1 Missense_Mutation p.G129D 0.24 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 66617567 66617567 G A PC Silent p.I913I 0.42 TCGA-19-5956-01 11 67049801 67049801 C A ADRBK1 Silent p.A339A 0.05 TCGA-19-5956-01 11 67378032 67378032 G A NDUFV1 Missense_Mutation p.A231T 0.57 deleterious_low_confidence(0) probably_damaging(1) TCGA-19-5956-01 11 67379879 67379879 C T NDUFV1 Missense_Mutation p.R449W 0.48 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 11 67399801 67399801 C A TBX10 Missense_Mutation p.D286Y 0.05 deleterious(0) benign(0.232) TCGA-19-5956-01 11 67413198 67413198 C T ACY3 Missense_Mutation p.E133K 0.47 deleterious(0.01) benign(0.006) TCGA-19-5956-01 11 67925244 67925244 G A SUV420H1 Missense_Mutation p.R857C 0.63 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 6806614 6806614 G A OR2AG1 Missense_Mutation p.A116T 0.93 deleterious(0.02) possibly_damaging(0.45) TCGA-19-5956-01 11 68115322 68115322 G A LRP5 Silent p.P33P 0.49 TCGA-19-5956-01 11 68370952 68370952 C A PPP6R3 Silent p.V814V 0.13 TCGA-19-5956-01 11 68458532 68458532 T G GAL 3'UTR 0.19 TCGA-19-5956-01 11 68527081 68527081 G T CPT1A Missense_Mutation p.L731I 0.12 tolerated(0.1) benign(0.067) TCGA-19-5956-01 11 68542786 68542786 C A CPT1A Nonsense_Mutation p.E525* 0.30 TCGA-19-5956-01 11 68564396 68564396 G A CPT1A Silent p.S233S 0.42 TCGA-19-5956-01 11 6898737 6898737 A G OR10A4 Missense_Mutation p.N287D 0.05 deleterious(0) possibly_damaging(0.818) TCGA-19-5956-01 11 6898788 6898788 C T OR10A4 Missense_Mutation p.R304W 0.20 deleterious(0.02) benign(0.021) TCGA-19-5956-01 11 69063102 69063102 G A MYEOV Missense_Mutation p.R62Q 0.51 deleterious_low_confidence(0) benign(0) TCGA-19-5956-01 11 69625309 69625309 G A FGF3 Missense_Mutation p.R162W 0.14 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 70170611 70170611 T C PPFIA1 Splice_Site p.X122_splice 0.07 TCGA-19-5956-01 11 70183513 70183513 G A PPFIA1 Missense_Mutation p.E491K 0.35 deleterious(0.03) benign(0.19) TCGA-19-5956-01 11 70277335 70277335 G A CTTN Silent p.S368S 0.21 TCGA-19-5956-01 11 70331474 70331474 G A SHANK2 Missense_Mutation p.P1643S 0.53 deleterious(0.04) possibly_damaging(0.641) TCGA-19-5956-01 11 71150055 71150055 T G DHCR7 Missense_Mutation p.D234A 0.26 deleterious(0.01) probably_damaging(0.936) TCGA-19-5956-01 11 71507123 71507123 C T FAM86C1 Missense_Mutation p.P108S 0.11 tolerated_low_confidence(0.42) possibly_damaging(0.782) TCGA-19-5956-01 11 71511608 71511608 G A FAM86C1 3'UTR 0.17 TCGA-19-5956-01 11 71544281 71544281 C A DEFB108B Missense_Mutation p.F12L 0.18 tolerated(0.64) benign(0) TCGA-19-5956-01 11 72013403 72013403 A G CLPB Intron 0.45 TCGA-19-5956-01 11 72028224 72028224 C T CLPB Missense_Mutation p.R335H 0.41 deleterious(0) probably_damaging(0.96) TCGA-19-5956-01 11 72293587 72293587 T C PDE2A Silent p.K584K 0.10 TCGA-19-5956-01 11 72407630 72407630 C T ARAP1 Missense_Mutation p.R1079Q 0.10 deleterious(0.03) benign(0.014) TCGA-19-5956-01 11 72560904 72560904 C T FCHSD2 Missense_Mutation p.E447K 0.27 deleterious(0.01) possibly_damaging(0.894) TCGA-19-5956-01 11 73067280 73067280 C T ARHGEF17 Missense_Mutation p.R1242W 0.11 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 11 73689036 73689036 G T UCP2 Missense_Mutation p.L78I 0.22 deleterious(0.01) probably_damaging(0.943) TCGA-19-5956-01 11 73716824 73716824 G A UCP3 Silent p.D164D 0.18 TCGA-19-5956-01 11 73879395 73879395 G T C2CD3 Missense_Mutation p.L107I 0.46 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 74336497 74336497 G T POLD3 Nonsense_Mutation p.E260* 0.11 TCGA-19-5956-01 11 74717419 74717419 C T NEU3 Missense_Mutation p.T423I 0.10 tolerated(0.22) benign(0.003) TCGA-19-5956-01 11 74914070 74914070 C T SLCO2B1 Intron 0.30 TCGA-19-5956-01 11 75152309 75152309 C T GDPD5 Missense_Mutation p.A458T 0.22 tolerated(0.06) benign(0.001) TCGA-19-5956-01 11 76063427 76063427 T C PRKRIR Missense_Mutation p.D256G 0.07 deleterious(0.02) benign(0.315) TCGA-19-5956-01 11 76237617 76237617 G A C11orf30 Missense_Mutation p.V645I 0.46 tolerated(0.53) possibly_damaging(0.785) TCGA-19-5956-01 11 76371791 76371791 C T LRRC32 Silent p.G282G 0.22 TCGA-19-5956-01 11 76804768 76804768 G A CAPN5 Missense_Mutation p.S69N 0.36 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 11 7686663 7686663 G A CYB5R2 Missense_Mutation p.A258V 0.62 deleterious(0.03) benign(0.036) TCGA-19-5956-01 11 76885836 76885836 G T MYO7A Missense_Mutation p.R657L 0.38 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 7718128 7718128 A G OVCH2 Missense_Mutation p.V342A 0.49 tolerated(0.15) benign(0.065) TCGA-19-5956-01 11 7725316 7725316 C A OVCH2 Missense_Mutation p.Q73H 0.45 deleterious(0.04) benign(0.111) TCGA-19-5956-01 11 77412488 77412488 G T RSF1 Missense_Mutation p.L596I 0.39 tolerated_low_confidence(0.25) benign(0.002) TCGA-19-5956-01 11 77412677 77412677 C T RSF1 Missense_Mutation p.D533N 0.20 tolerated_low_confidence(0.17) benign(0.022) TCGA-19-5956-01 11 77412799 77412799 G A RSF1 Missense_Mutation p.S492F 0.21 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-19-5956-01 11 77451790 77451790 C A RSF1 Missense_Mutation p.W188C 0.11 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 77451804 77451804 C A RSF1 Missense_Mutation p.D184Y 0.25 deleterious(0) possibly_damaging(0.89) TCGA-19-5956-01 11 77815466 77815466 C T ALG8 Silent p.S404S 0.19 TCGA-19-5956-01 11 77920696 77920696 G A USP35 Missense_Mutation p.A599T 0.18 deleterious(0) unknown(0) TCGA-19-5956-01 11 77920878 77920878 C T USP35 Silent p.I659I 0.42 TCGA-19-5956-01 11 77921695 77921695 G A USP35 Missense_Mutation p.E932K 0.49 tolerated(0.62) benign(0.062) TCGA-19-5956-01 11 78176923 78176923 G A NARS2 Missense_Mutation p.T388M 0.46 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 7818459 7818459 C T OR5P2 Missense_Mutation p.A11T 0.25 tolerated(0.28) benign(0.01) TCGA-19-5956-01 11 78369342 78369342 G A TENM4 Silent p.L2691L 0.18 TCGA-19-5956-01 11 78380061 78380061 G A TENM4 Silent p.N2443N 0.50 TCGA-19-5956-01 11 78413077 78413077 G A TENM4 Silent p.D1527D 0.53 TCGA-19-5956-01 11 78413343 78413343 G A TENM4 Missense_Mutation p.R1439C 0.13 deleterious(0) possibly_damaging(0.899) TCGA-19-5956-01 11 7846648 7846648 C T OR5P3 Missense_Mutation p.S291N 0.22 deleterious(0.01) benign(0.32) TCGA-19-5956-01 11 82550376 82550376 G A PRCP Missense_Mutation p.S359L 0.08 deleterious(0) possibly_damaging(0.842) TCGA-19-5956-01 11 82561493 82561493 C A PRCP Nonsense_Mutation p.E177* 0.23 TCGA-19-5956-01 11 82625793 82625793 C T C11orf82 Nonsense_Mutation p.R5* 0.15 TCGA-19-5956-01 11 82872383 82872383 G A PCF11 Silent p.E69E 0.63 TCGA-19-5956-01 11 82879713 82879713 G A PCF11 Missense_Mutation p.R779Q 0.49 tolerated(0.06) probably_damaging(0.961) TCGA-19-5956-01 11 82959036 82959036 A G ANKRD42 Missense_Mutation p.K388R 0.33 tolerated_low_confidence(0.43) benign(0) TCGA-19-5956-01 11 83180266 83180266 G A DLG2 Missense_Mutation p.S866F 0.43 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 83676393 83676393 G T DLG2 Missense_Mutation p.P392H 0.11 tolerated(0.29) probably_damaging(0.999) TCGA-19-5956-01 11 8496386 8496386 C A STK33 Missense_Mutation p.D23Y 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.472) TCGA-19-5956-01 11 85396102 85396102 G T CCDC89 Missense_Mutation p.L358I 0.45 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 11 85437366 85437366 G T SYTL2 Missense_Mutation p.S45Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.525) TCGA-19-5956-01 11 85584276 85584276 G A CCDC83 Missense_Mutation p.V40M 0.34 deleterious(0) possibly_damaging(0.838) TCGA-19-5956-01 11 85989339 85989339 G A EED Intron 0.31 TCGA-19-5956-01 11 86086172 86086172 G A CCDC81 5'UTR 0.12 TCGA-19-5956-01 11 86098566 86098566 G A CCDC81 Silent p.Q50Q 0.19 TCGA-19-5956-01 11 86198431 86198431 C A ME3 Missense_Mutation p.G253W 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 86662094 86662094 G T FZD4 3'UTR 0.12 TCGA-19-5956-01 11 86662363 86662363 A C FZD4 Missense_Mutation p.L479V 0.51 tolerated(0.22) benign(0.123) TCGA-19-5956-01 11 86663542 86663542 A C FZD4 Intron 0.25 TCGA-19-5956-01 11 88045592 88045592 T C CTSC Missense_Mutation p.Y150C 0.48 tolerated(0.07) benign(0.042) TCGA-19-5956-01 11 88911756 88911756 G T TYR Missense_Mutation p.R212I 0.46 deleterious(0) probably_damaging(1) TCGA-19-5956-01 11 8947640 8947640 C A C11orf16 Nonsense_Mutation p.E192* 0.17 TCGA-19-5956-01 11 89896536 89896536 A G NAALAD2 Silent p.P378P 0.11 TCGA-19-5956-01 11 89911086 89911086 G A NAALAD2 Silent p.E553E 0.45 TCGA-19-5956-01 11 89924901 89924901 A C NAALAD2 Missense_Mutation p.K737Q 0.06 tolerated(0.08) benign(0.003) TCGA-19-5956-01 11 9051542 9051542 G A SCUBE2 Missense_Mutation p.R741C 0.51 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 11 92087958 92087958 C T FAT3 Missense_Mutation p.R894W 0.08 probably_damaging(1) TCGA-19-5956-01 11 92534102 92534102 C T FAT3 Silent p.S2641S 0.64 TCGA-19-5956-01 11 92534311 92534311 C A FAT3 Missense_Mutation p.S2711Y 0.18 benign(0.001) TCGA-19-5956-01 11 92616245 92616245 C T FAT3 Missense_Mutation p.P4208L 0.27 benign(0) TCGA-19-5956-01 11 92616323 92616323 C T FAT3 Missense_Mutation p.P4234L 0.45 probably_damaging(0.999) TCGA-19-5956-01 11 92895951 92895951 T G SLC36A4 Missense_Mutation p.T320P 0.56 deleterious(0.04) possibly_damaging(0.555) TCGA-19-5956-01 11 93097360 93097360 G T CCDC67 Missense_Mutation p.R111I 0.21 deleterious(0.01) probably_damaging(0.977) TCGA-19-5956-01 11 93127693 93127693 C A CCDC67 Silent p.I370I 0.36 TCGA-19-5956-01 11 93212221 93212221 G A SMCO4 Silent p.I45I 0.40 TCGA-19-5956-01 11 93212434 93212434 T C SMCO4 Intron 0.36 TCGA-19-5956-01 11 93526926 93526926 G T MED17 Missense_Mutation p.V224L 0.11 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 11 93822038 93822038 G T HEPHL1 Missense_Mutation p.R733I 0.45 deleterious(0.01) possibly_damaging(0.885) TCGA-19-5956-01 11 94113338 94113338 C - GPR83 Frame_Shift_Del p.E417Nfs*4 0.17 TCGA-19-5956-01 11 94129635 94129635 C T GPR83 Missense_Mutation p.R148H 0.09 tolerated(0.05) probably_damaging(0.994) TCGA-19-5956-01 11 94229797 94229797 C A ANKRD49 5'UTR 0.31 TCGA-19-5956-01 11 94730553 94730553 C A KDM4D Missense_Mutation p.S6Y 0.07 deleterious(0.02) probably_damaging(0.95) TCGA-19-5956-01 11 94731548 94731548 C T KDM4D Missense_Mutation p.R338C 0.17 tolerated(0.11) benign(0.007) TCGA-19-5956-01 11 94862080 94862080 A C ENDOD1 Missense_Mutation p.K280N 0.32 deleterious(0.02) probably_damaging(0.932) TCGA-19-5956-01 11 94918509 94918509 T C SESN3 Missense_Mutation p.R225G 0.09 deleterious(0.03) benign(0.312) TCGA-19-5956-01 11 9534079 9534079 C T ZNF143 Missense_Mutation p.A487V 0.24 deleterious(0.03) benign(0.367) TCGA-19-5956-01 11 96117436 96117436 T G CCDC82 Missense_Mutation p.D159A 0.19 tolerated(0.09) benign(0.171) TCGA-19-5956-01 11 96124311 96124311 G T JRKL Missense_Mutation p.E166D 0.21 tolerated(0.19) possibly_damaging(0.725) TCGA-19-5956-01 11 9761791 9761791 C T SWAP70 Nonsense_Mutation p.R418* 0.49 TCGA-19-5956-01 11 9867113 9867113 G A SBF2 Missense_Mutation p.R1037C 0.39 deleterious(0) benign(0.055) TCGA-19-5956-01 11 99931988 99931988 C A CNTN5 Missense_Mutation p.P342H 0.44 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 1005882 1005882 C T WNK1 Nonsense_Mutation p.R2077* 0.37 TCGA-19-5956-01 12 100657413 100657413 T G DEPDC4 Missense_Mutation p.K139T 0.27 tolerated(0.23) possibly_damaging(0.728) TCGA-19-5956-01 12 100930750 100930750 G T NR1H4 Nonsense_Mutation p.E296* 0.28 TCGA-19-5956-01 12 100934582 100934582 G T NR1H4 Missense_Mutation p.R365I 0.23 tolerated(0.26) possibly_damaging(0.588) TCGA-19-5956-01 12 101018395 101018395 C A GAS2L3 Silent p.S604S 0.12 TCGA-19-5956-01 12 101336183 101336183 G T ANO4 Missense_Mutation p.G74V 0.13 deleterious(0.02) probably_damaging(0.967) TCGA-19-5956-01 12 101480535 101480535 A G ANO4 Missense_Mutation p.N510S 0.24 tolerated(0.18) benign(0.431) TCGA-19-5956-01 12 101491668 101491668 G T ANO4 Missense_Mutation p.G616C 0.22 deleterious(0.05) probably_damaging(0.999) TCGA-19-5956-01 12 101587402 101587402 C A SLC5A8 Splice_Site p.X231_splice 0.20 TCGA-19-5956-01 12 101720945 101720945 G A UTP20 Missense_Mutation p.R1043Q 0.41 deleterious(0.04) possibly_damaging(0.899) TCGA-19-5956-01 12 101736730 101736730 C T UTP20 Silent p.F1436F 0.11 TCGA-19-5956-01 12 101746844 101746844 G T UTP20 Nonsense_Mutation p.E1682* 0.12 TCGA-19-5956-01 12 101873366 101873366 G T SPIC Missense_Mutation p.R35I 0.42 tolerated(0.11) benign(0.125) TCGA-19-5956-01 12 102061661 102061661 C T MYBPC1 Silent p.L829L 0.14 TCGA-19-5956-01 12 102067287 102067287 C A MYBPC1 Missense_Mutation p.T892N 0.23 tolerated(0.56) benign(0.009) TCGA-19-5956-01 12 102076431 102076431 G A MYBPC1 Silent p.G1154G 0.08 TCGA-19-5956-01 12 102164242 102164242 C A GNPTAB Missense_Mutation p.G352V 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 102164289 102164289 G A GNPTAB Silent p.I336I 0.42 TCGA-19-5956-01 12 102164332 102164332 C T GNPTAB Missense_Mutation p.R322H 0.35 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 102164812 102164812 G A GNPTAB Missense_Mutation p.P299S 0.20 tolerated(0.28) possibly_damaging(0.48) TCGA-19-5956-01 12 10218146 10218146 T C CLEC9A Missense_Mutation p.V214A 0.43 deleterious(0) benign(0.03) TCGA-19-5956-01 12 10224007 10224007 G T CLEC1A Silent p.V256V 0.36 TCGA-19-5956-01 12 102455710 102455710 A G CCDC53 Missense_Mutation p.S11P 0.18 tolerated(0.53) benign(0.012) TCGA-19-5956-01 12 102572545 102572545 T C PARPBP Missense_Mutation p.F394S 0.19 deleterious(0) probably_damaging(0.929) TCGA-19-5956-01 12 102589903 102589903 G T PARPBP Missense_Mutation p.R525I 0.11 deleterious(0.01) benign(0.169) TCGA-19-5956-01 12 10270966 10270966 T C CLEC7A 3'UTR 0.17 TCGA-19-5956-01 12 10280010 10280010 T C CLEC7A Intron 0.26 TCGA-19-5956-01 12 102811542 102811542 C T IGF1 3'UTR 0.36 TCGA-19-5956-01 12 102811655 102811655 C A IGF1 Nonsense_Mutation p.E177* 0.07 TCGA-19-5956-01 12 102869479 102869479 G A IGF1 Silent p.C54C 0.46 TCGA-19-5956-01 12 104048369 104048369 A C STAB2 Missense_Mutation p.K482Q 0.36 deleterious(0.04) possibly_damaging(0.745) TCGA-19-5956-01 12 104121054 104121054 G A STAB2 Missense_Mutation p.V1621M 0.24 deleterious(0.03) benign(0.379) TCGA-19-5956-01 12 104122641 104122641 C T STAB2 Silent p.D1650D 0.36 TCGA-19-5956-01 12 104160166 104160166 C A STAB2 3'UTR 0.28 TCGA-19-5956-01 12 104326624 104326624 T G HSP90B1 Missense_Mutation p.I105M 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 104378584 104378584 G T TDG Missense_Mutation p.D284Y 0.12 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 12 104698289 104698289 C T EID3 Missense_Mutation p.R193C 0.23 tolerated(0.08) benign(0.022) TCGA-19-5956-01 12 104712709 104712709 G T TXNRD1 Missense_Mutation p.R250I 0.11 tolerated(0.05) benign(0.005) TCGA-19-5956-01 12 105238299 105238299 G T SLC41A2 Missense_Mutation p.S496Y 0.28 deleterious(0.03) possibly_damaging(0.879) TCGA-19-5956-01 12 105420424 105420424 T A ALDH1L2 Missense_Mutation p.E872V 0.22 deleterious(0.01) possibly_damaging(0.635) TCGA-19-5956-01 12 105536925 105536925 C T KIAA1033 Silent p.R638R 0.19 TCGA-19-5956-01 12 105540279 105540279 G A KIAA1033 Missense_Mutation p.R795Q 0.07 deleterious(0.02) possibly_damaging(0.705) TCGA-19-5956-01 12 10562138 10562138 G A KLRC4 Silent p.L13L 0.10 TCGA-19-5956-01 12 10568276 10568276 C T KLRC3 Silent p.A235A 0.44 TCGA-19-5956-01 12 10588515 10588515 G T KLRC2 Missense_Mutation p.P24H 0.10 deleterious(0.02) possibly_damaging(0.685) TCGA-19-5956-01 12 10603672 10603672 T G KLRC1 Missense_Mutation p.K28N 0.25 tolerated(0.19) benign(0.082) TCGA-19-5956-01 12 106460705 106460705 G A NUAK1 Missense_Mutation p.R621W 0.26 deleterious(0.02) probably_damaging(0.947) TCGA-19-5956-01 12 106763365 106763365 G A POLR3B Missense_Mutation p.R103H 0.18 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 106773821 106773822 - A POLR3B Frame_Shift_Ins p.S212Kfs*17 0.44 TCGA-19-5956-01 12 106821007 106821007 A C POLR3B Missense_Mutation p.K378N 0.31 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 12 106890577 106890577 C T POLR3B Silent p.D955D 0.16 TCGA-19-5956-01 12 10750750 10750750 C A KLRAP1 RNA 0.23 TCGA-19-5956-01 12 108035942 108035942 C A BTBD11 Silent p.I972I 0.09 TCGA-19-5956-01 12 108051485 108051485 C T BTBD11 Missense_Mutation p.S1102F 0.30 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 12 108082224 108082224 G T PWP1 Splice_Site p.X25_splice 0.19 TCGA-19-5956-01 12 108920209 108920209 C T SART3 Silent p.S679S 0.21 TCGA-19-5956-01 12 10954209 10954209 C A TAS2R7 3'UTR 0.32 TCGA-19-5956-01 12 109612034 109612034 C T ACACB Silent p.S405S 0.62 TCGA-19-5956-01 12 10961782 10961782 C A TAS2R9 Missense_Mutation p.R298I 0.11 tolerated(0.33) possibly_damaging(0.542) TCGA-19-5956-01 12 10962557 10962557 C A TAS2R9 Missense_Mutation p.D40Y 0.17 deleterious(0) possibly_damaging(0.773) TCGA-19-5956-01 12 109945424 109945424 C T UBE3B Silent p.L502L 0.44 TCGA-19-5956-01 12 110346421 110346421 C A TCHP Missense_Mutation p.L244M 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 11035256 11035256 C T PRH1 Missense_Mutation p.G48R 0.07 tolerated_low_confidence(0.84) probably_damaging(0.979) TCGA-19-5956-01 12 11061336 11061336 G T TAS2R13 Missense_Mutation p.L188I 0.13 tolerated(0.2) benign(0.123) TCGA-19-5956-01 12 110788113 110788113 G A ATP2A2 3'Flank 0.48 TCGA-19-5956-01 12 11083302 11083302 G A PRH2 Missense_Mutation p.G48R 0.10 tolerated_low_confidence(0.84) probably_damaging(0.979) TCGA-19-5956-01 12 110890758 110890758 C A GPN3 3'UTR 0.29 TCGA-19-5956-01 12 110893464 110893464 G T GPN3 Missense_Mutation p.S236Y 0.19 tolerated(1) benign(0.055) TCGA-19-5956-01 12 110897616 110897616 C T GPN3 Missense_Mutation p.R109Q 0.21 tolerated(0.33) benign(0.024) TCGA-19-5956-01 12 11091617 11091617 C T TAS2R14 Missense_Mutation p.G64R 0.39 tolerated(0.29) benign(0.019) TCGA-19-5956-01 12 111160283 111160283 G A PPP1CC Silent p.A247A 0.55 TCGA-19-5956-01 12 111321859 111321859 G T CCDC63 Missense_Mutation p.K293N 0.21 deleterious(0) probably_damaging(0.951) TCGA-19-5956-01 12 11138940 11138940 G T TAS2R50 Missense_Mutation p.L174I 0.06 tolerated(0.14) possibly_damaging(0.458) TCGA-19-5956-01 12 111652009 111652009 G A CUX2 Silent p.E23E 0.12 TCGA-19-5956-01 12 111701571 111701571 G A CUX2 Missense_Mutation p.A77T 0.09 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 12 111758076 111758076 G A CUX2 Missense_Mutation p.A755T 0.13 tolerated(0.75) benign(0) TCGA-19-5956-01 12 11183064 11183064 G T TAS2R31 Missense_Mutation p.L291I 0.17 deleterious(0.02) possibly_damaging(0.612) TCGA-19-5956-01 12 111885551 111885551 G A SH2B3 Missense_Mutation p.R443H 0.37 tolerated(0.39) benign(0.023) TCGA-19-5956-01 12 111948263 111948263 G A ATXN2 Missense_Mutation p.A721V 0.49 benign(0.359) TCGA-19-5956-01 12 111958735 111958735 C A ATXN2 Nonsense_Mutation p.E407* 0.40 TCGA-19-5956-01 12 112082120 112082120 C T BRAP Silent p.R554R 0.41 TCGA-19-5956-01 12 112167630 112167630 G A ACAD10 Missense_Mutation p.V453I 0.10 tolerated(0.24) possibly_damaging(0.546) TCGA-19-5956-01 12 112247391 112247391 G T ALDH2 3'UTR 0.20 TCGA-19-5956-01 12 11244502 11244502 C A TAS2R43 Missense_Mutation p.K109N 0.09 deleterious(0.01) possibly_damaging(0.867) TCGA-19-5956-01 12 112512535 112512535 G A NAA25 Silent p.F270F 0.46 TCGA-19-5956-01 12 112512538 112512538 A C NAA25 Nonsense_Mutation p.Y269* 0.09 TCGA-19-5956-01 12 112589912 112589912 C A TRAFD1 Missense_Mutation p.F529L 0.27 tolerated(0.15) benign(0.023) TCGA-19-5956-01 12 112601015 112601015 G A HECTD4 Silent p.F4171F 0.44 TCGA-19-5956-01 12 112697014 112697014 C T HECTD4 Missense_Mutation p.V831M 0.40 probably_damaging(0.972) TCGA-19-5956-01 12 112846393 112846393 G A RPL6 Missense_Mutation p.A23V 0.14 tolerated(0.09) benign(0.079) TCGA-19-5956-01 12 112846401 112846401 C T RPL6 Silent p.K20K 0.35 TCGA-19-5956-01 12 11286624 11286624 C T TAS2R30 Missense_Mutation p.A74T 0.27 tolerated(0.51) benign(0.098) TCGA-19-5956-01 12 112884198 112884198 G A PTPN11 Missense_Mutation p.V45I 0.50 tolerated(0.05) benign(0.019) TCGA-19-5956-01 12 112888199 112888199 C T PTPN11 Missense_Mutation p.A72V 0.12 deleterious(0.02) probably_damaging(0.96) TCGA-19-5956-01 12 113304599 113304599 G A RPH3A Missense_Mutation p.R133H 0.59 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 12 113306198 113306198 G A RPH3A Intron 0.43 TCGA-19-5956-01 12 113332441 113332441 A G RPH3A Missense_Mutation p.T612A 0.23 deleterious(0) probably_damaging(0.973) TCGA-19-5956-01 12 113386889 113386889 G A OAS3 Missense_Mutation p.R418H 0.52 deleterious(0.01) possibly_damaging(0.608) TCGA-19-5956-01 12 113405267 113405267 G A OAS3 Missense_Mutation p.D912N 0.31 tolerated(0.1) benign(0.029) TCGA-19-5956-01 12 113602018 113602018 G A DDX54 Missense_Mutation p.R598C 0.64 tolerated(0.09) benign(0.005) TCGA-19-5956-01 12 113867086 113867086 G A SDSL Silent p.E112E 0.22 TCGA-19-5956-01 12 11461682 11461682 C A PRB4 Nonsense_Mutation p.E79* 0.06 TCGA-19-5956-01 12 11463344 11463344 C T PRB4 5'UTR 0.51 TCGA-19-5956-01 12 115121089 115121089 G T TBX3 5'UTR 0.40 TCGA-19-5956-01 12 116406873 116406873 C A MED13L Missense_Mutation p.D2033Y 0.26 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 12 116420296 116420296 C A MED13L Nonsense_Mutation p.E1690* 0.25 TCGA-19-5956-01 12 116440810 116440810 G T MED13L Missense_Mutation p.P856Q 0.29 tolerated(0.3) unknown(0) TCGA-19-5956-01 12 116446414 116446414 C T MED13L Missense_Mutation p.V602I 0.10 tolerated(0.23) unknown(0) TCGA-19-5956-01 12 117612498 117612498 G A FBXO21 Missense_Mutation p.R233W 0.50 deleterious(0) possibly_damaging(0.873) TCGA-19-5956-01 12 117655890 117655890 G A NOS1 Missense_Mutation p.S1451F 0.25 deleterious(0) probably_damaging(0.954) TCGA-19-5956-01 12 117669911 117669911 C T NOS1 Silent p.E1121E 0.44 TCGA-19-5956-01 12 117723961 117723961 G A NOS1 Missense_Mutation p.A413V 0.37 deleterious(0) possibly_damaging(0.799) TCGA-19-5956-01 12 117768179 117768179 C A NOS1 Missense_Mutation p.E232D 0.24 tolerated_low_confidence(0.07) benign(0.001) TCGA-19-5956-01 12 117768478 117768478 C T NOS1 Missense_Mutation p.V133M 0.47 deleterious_low_confidence(0.02) benign(0.135) TCGA-19-5956-01 12 117768883 117768883 G A NOS1 5'Flank 0.27 TCGA-19-5956-01 12 118454592 118454592 G A RFC5 5'UTR 0.35 TCGA-19-5956-01 12 118472806 118472806 C T WSB2 Missense_Mutation p.G346E 0.18 deleterious(0.02) probably_damaging(0.987) TCGA-19-5956-01 12 118504274 118504274 A C VSIG10 3'UTR 0.36 TCGA-19-5956-01 12 118517339 118517339 C T VSIG10 Missense_Mutation p.R246H 0.51 tolerated(0.12) benign(0.022) TCGA-19-5956-01 12 118575892 118575892 A C PEBP1 Missense_Mutation p.K62Q 0.14 tolerated(0.25) benign(0.01) TCGA-19-5956-01 12 118619377 118619377 G A TAOK3 Silent p.N455N 0.44 TCGA-19-5956-01 12 119968849 119968849 A G CCDC60 Missense_Mutation p.D511G 0.15 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 12 120138631 120138631 C A CIT Splice_Site p.X1848_splice 0.13 TCGA-19-5956-01 12 120151076 120151076 C T CIT Missense_Mutation p.G1504D 0.47 deleterious(0.03) probably_damaging(1) TCGA-19-5956-01 12 120213602 120213602 C A CIT Missense_Mutation p.E643D 0.31 tolerated(0.77) benign(0.001) TCGA-19-5956-01 12 120621397 120621397 C T GCN1L1 Missense_Mutation p.R134Q 0.44 benign(0.017) TCGA-19-5956-01 12 120741674 120741674 C T SIRT4 Missense_Mutation p.R104W 0.38 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 12 121431465 121431465 C A HNF1A Missense_Mutation p.N223K 0.26 deleterious(0.01) possibly_damaging(0.865) TCGA-19-5956-01 12 121622170 121622170 G A P2RX7 Silent p.P451P 0.20 TCGA-19-5956-01 12 121686421 121686421 G T CAMKK2 Missense_Mutation p.S480R 0.20 tolerated(0.11) benign(0.235) TCGA-19-5956-01 12 121747509 121747509 G T ANAPC5 Missense_Mutation p.A684E 0.09 tolerated(1) benign(0.018) TCGA-19-5956-01 12 121855586 121855586 T C RNF34 Missense_Mutation p.S170P 0.26 tolerated(0.38) benign(0.049) TCGA-19-5956-01 12 121855708 121855708 G A RNF34 Silent p.P210P 0.20 TCGA-19-5956-01 12 121858093 121858093 G A RNF34 Missense_Mutation p.D229N 0.35 tolerated(0.36) benign(0.153) TCGA-19-5956-01 12 121858535 121858535 G T RNF34 Missense_Mutation p.E295D 0.51 deleterious(0.02) possibly_damaging(0.536) TCGA-19-5956-01 12 1221446 1221446 G A ERC1 Silent p.A461A 0.12 TCGA-19-5956-01 12 122217443 122217443 C T RHOF Silent p.A199A 0.21 TCGA-19-5956-01 12 122395019 122395019 C A WDR66 Missense_Mutation p.F525L 0.09 deleterious(0.01) possibly_damaging(0.877) TCGA-19-5956-01 12 122398591 122398591 G A WDR66 Missense_Mutation p.R745Q 0.20 tolerated(0.39) benign(0.01) TCGA-19-5956-01 12 122677316 122677316 G T LRRC43 Nonsense_Mutation p.E372* 0.44 TCGA-19-5956-01 12 122701415 122701415 G A DIABLO Missense_Mutation p.A106V 0.41 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 12274092 12274092 G T LRP6 Missense_Mutation p.P1604T 0.20 deleterious_low_confidence(0.01) probably_damaging(0.998) TCGA-19-5956-01 12 12277510 12277510 A G LRP6 Silent p.H1512H 0.51 TCGA-19-5956-01 12 122825734 122825734 C T CLIP1 Missense_Mutation p.E673K 0.22 deleterious(0.02) probably_damaging(0.984) TCGA-19-5956-01 12 122832027 122832027 C T CLIP1 Splice_Site p.X468_splice 0.20 TCGA-19-5956-01 12 12283828 12283828 C T LRP6 Splice_Site p.X1324_splice 0.19 TCGA-19-5956-01 12 122862288 122862288 G A CLIP1 Missense_Mutation p.S102L 0.14 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 12 12291434 12291434 G T LRP6 Silent p.I1144I 0.26 TCGA-19-5956-01 12 123067347 123067347 A G KNTC1 Silent p.A1026A 0.36 TCGA-19-5956-01 12 123087576 123087576 C A KNTC1 Missense_Mutation p.F1629L 0.15 tolerated(0.32) probably_damaging(0.982) TCGA-19-5956-01 12 123089882 123089882 G A KNTC1 Missense_Mutation p.E1806K 0.20 tolerated(0.08) probably_damaging(0.952) TCGA-19-5956-01 12 123095448 123095448 G A KNTC1 Splice_Site p.X1874_splice 0.33 TCGA-19-5956-01 12 123339637 123339637 T C HIP1R Missense_Mutation p.Y272H 0.51 deleterious(0.02) probably_damaging(0.995) TCGA-19-5956-01 12 123380513 123380513 G A VPS37B Nonsense_Mutation p.Q33* 0.22 TCGA-19-5956-01 12 123444360 123444360 C T ABCB9 Silent p.R141R 0.18 TCGA-19-5956-01 12 123462993 123462993 G T OGFOD2 Missense_Mutation p.E76D 0.21 tolerated(0.49) benign(0.002) TCGA-19-5956-01 12 123741685 123741685 T G C12orf65 3'UTR 0.53 TCGA-19-5956-01 12 123746238 123746238 C A CDK2AP1 3'UTR 0.10 TCGA-19-5956-01 12 123794265 123794265 C T SBNO1 Missense_Mutation p.G1145E 0.23 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 12 123794373 123794373 C A SBNO1 Missense_Mutation p.R1109I 0.17 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 123812258 123812258 G A SBNO1 Missense_Mutation p.R512W 0.27 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 12 123875317 123875317 C A SETD8 Silent p.I91I 0.20 TCGA-19-5956-01 12 123983222 123983222 C T RILPL1 Missense_Mutation p.E224K 0.25 tolerated(0.07) benign(0.035) TCGA-19-5956-01 12 124104094 124104094 G A DDX55 Silent p.T483T 0.20 TCGA-19-5956-01 12 124228470 124228470 G T ATP6V0A2 Nonsense_Mutation p.E393* 0.48 TCGA-19-5956-01 12 124288330 124288330 C A DNAH10 Missense_Mutation p.L795I 0.08 possibly_damaging(0.53) TCGA-19-5956-01 12 124311398 124311398 C T DNAH10 Silent p.D1330D 0.35 TCGA-19-5956-01 12 124315119 124315119 C T DNAH10 Missense_Mutation p.T1355M 0.50 probably_damaging(0.999) TCGA-19-5956-01 12 124317763 124317763 G A DNAH10 Missense_Mutation p.E1432K 0.20 possibly_damaging(0.804) TCGA-19-5956-01 12 124352112 124352112 G A DNAH10 Silent p.K2304K 0.14 TCGA-19-5956-01 12 124358185 124358185 A G DNAH10 Silent p.R2504R 0.50 TCGA-19-5956-01 12 124358219 124358219 C T DNAH10 Missense_Mutation p.R2516C 0.38 benign(0.373) TCGA-19-5956-01 12 124417946 124417946 G A DNAH10 Silent p.A4337A 0.62 TCGA-19-5956-01 12 124819071 124819071 G T NCOR2 Nonsense_Mutation p.C2168* 0.73 TCGA-19-5956-01 12 124824969 124824969 T G NCOR2 Missense_Mutation p.K1787Q 0.15 probably_damaging(0.998) TCGA-19-5956-01 12 124826599 124826599 C T NCOR2 Missense_Mutation p.R1653Q 0.28 probably_damaging(0.955) TCGA-19-5956-01 12 125398186 125398186 G T UBC Silent p.I44I 0.25 TCGA-19-5956-01 12 125438541 125438541 G A DHX37 Silent p.G860G 0.16 TCGA-19-5956-01 12 125900138 125900138 G A TMEM132B Missense_Mutation p.A336T 0.36 tolerated(0.2) benign(0.009) TCGA-19-5956-01 12 12940683 12940683 G T APOLD1 3'UTR 0.62 TCGA-19-5956-01 12 129569224 129569224 G T TMEM132D Silent p.V489V 0.56 TCGA-19-5956-01 12 12980283 12980283 G A DDX47 Missense_Mutation p.A404T 0.21 tolerated(0.64) benign(0) TCGA-19-5956-01 12 130883699 130883699 C A RIMBP2 Missense_Mutation p.S1047I 0.07 tolerated_low_confidence(0.11) benign(0.204) TCGA-19-5956-01 12 130919384 130919384 C T RIMBP2 Silent p.G699G 0.08 TCGA-19-5956-01 12 13102931 13102931 G T GPRC5D Missense_Mutation p.L130M 0.20 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 131466454 131466454 G T GPR133 Missense_Mutation p.K112N 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 12 131569106 131569106 G A GPR133 Silent p.S523S 0.13 TCGA-19-5956-01 12 131623712 131623712 G A GPR133 Splice_Site p.X844_splice 0.57 TCGA-19-5956-01 12 132198691 132198691 G A SFSWAP Silent p.Q98Q 0.15 TCGA-19-5956-01 12 132325349 132325349 C T MMP17 Silent p.T218T 0.34 TCGA-19-5956-01 12 132379581 132379581 G A ULK1 Missense_Mutation p.G12D 0.21 deleterious(0.01) possibly_damaging(0.688) TCGA-19-5956-01 12 132466816 132466816 G A EP400 Silent p.A574A 0.11 TCGA-19-5956-01 12 132479459 132479459 G A EP400 Missense_Mutation p.V929I 0.23 unknown(0) TCGA-19-5956-01 12 132514587 132514587 C T EP400 Missense_Mutation p.R1880W 0.41 unknown(0) TCGA-19-5956-01 12 132624719 132624719 G A DDX51 Nonsense_Mutation p.R567* 0.27 TCGA-19-5956-01 12 132688124 132688124 C T GALNT9 Missense_Mutation p.A31T 0.21 deleterious(0) possibly_damaging(0.848) TCGA-19-5956-01 12 133196647 133196647 C T P2RX2 Silent p.F173F 0.69 TCGA-19-5956-01 12 133198654 133198654 G A P2RX2 3'Flank 0.11 TCGA-19-5956-01 12 133215787 133215787 G A POLE Missense_Mutation p.R1826W 0.21 deleterious(0) probably_damaging(0.951) TCGA-19-5956-01 12 133235916 133235916 G T POLE Silent p.I1080I 0.25 TCGA-19-5956-01 12 133244979 133244979 G A POLE Silent p.R712R 0.11 TCGA-19-5956-01 12 133245484 133245484 G A POLE Silent p.D612D 0.24 TCGA-19-5956-01 12 133249857 133249857 C G POLE Missense_Mutation p.A456P 0.52 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 12 133295357 133295357 G A PGAM5 Intron 0.26 TCGA-19-5956-01 12 133434090 133434090 G A CHFR Missense_Mutation p.R335C 0.19 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 12 133683262 133683262 G A ZNF140 3'UTR 0.36 TCGA-19-5956-01 12 133733206 133733206 G T ZNF10 Missense_Mutation p.E458D 0.23 deleterious(0.01) probably_damaging(0.977) TCGA-19-5956-01 12 133733290 133733290 G T ZNF10 Missense_Mutation p.E486D 0.24 deleterious(0.01) probably_damaging(0.977) TCGA-19-5956-01 12 13716094 13716094 C T GRIN2B Missense_Mutation p.G1360R 0.07 tolerated(0.25) possibly_damaging(0.495) TCGA-19-5956-01 12 13768561 13768562 - T GRIN2B Frame_Shift_Ins p.C456Mfs*8 0.36 TCGA-19-5956-01 12 13906427 13906427 G T GRIN2B Silent p.I278I 0.24 TCGA-19-5956-01 12 14792816 14792816 C T GUCY2C Missense_Mutation p.A713T 0.36 tolerated(0.16) benign(0.019) TCGA-19-5956-01 12 14924014 14924014 G T HIST4H4 Missense_Mutation p.S2Y 0.24 deleterious_low_confidence(0) benign(0.184) TCGA-19-5956-01 12 14940195 14940195 C T WBP11 Missense_Mutation p.R577Q 0.04 tolerated(0.09) possibly_damaging(0.882) TCGA-19-5956-01 12 14982354 14982354 G T ART4 Missense_Mutation p.S299Y 0.34 deleterious(0.03) benign(0.401) TCGA-19-5956-01 12 14996033 14996033 G A ART4 Silent p.I5I 0.21 TCGA-19-5956-01 12 15654583 15654583 C T PTPRO Missense_Mutation p.R231C 0.41 deleterious_low_confidence(0) benign(0.386) TCGA-19-5956-01 12 15702119 15702119 A T PTPRO Missense_Mutation p.D799V 0.45 deleterious(0) benign(0.152) TCGA-19-5956-01 12 15784419 15784419 A G EPS8 Silent p.S667S 0.16 TCGA-19-5956-01 12 15800177 15800177 C A EPS8 Missense_Mutation p.E484D 0.38 tolerated(0.54) benign(0.001) TCGA-19-5956-01 12 16115799 16115799 G T DERA Missense_Mutation p.E142D 0.73 deleterious(0.04) probably_damaging(0.966) TCGA-19-5956-01 12 1702802 1702802 C T FBXL14 Missense_Mutation p.G144D 0.14 tolerated(0.11) benign(0.044) TCGA-19-5956-01 12 18234200 18234200 C A RERGL Missense_Mutation p.K181N 0.27 tolerated(0.09) benign(0.25) TCGA-19-5956-01 12 18238624 18238624 G T RERGL Missense_Mutation p.S39Y 0.16 deleterious(0.03) possibly_damaging(0.532) TCGA-19-5956-01 12 18435579 18435579 G A PIK3C2G Silent p.P188P 0.12 TCGA-19-5956-01 12 18644400 18644400 G T PIK3C2G Nonsense_Mutation p.E860* 0.10 TCGA-19-5956-01 12 18876398 18876398 C A PLCZ1 Nonsense_Mutation p.E72* 0.17 TCGA-19-5956-01 12 1902800 1902800 C A CACNA2D4 3'UTR 0.19 TCGA-19-5956-01 12 1943866 1943866 G T LRTM2 Missense_Mutation p.K364N 0.35 deleterious(0.04) possibly_damaging(0.649) TCGA-19-5956-01 12 1953626 1953626 C A CACNA2D4 Missense_Mutation p.Q804H 0.12 deleterious(0.01) possibly_damaging(0.615) TCGA-19-5956-01 12 20782976 20782976 C A PDE3A Missense_Mutation p.L559I 0.10 tolerated(0.64) benign(0.184) TCGA-19-5956-01 12 20833006 20833006 C A PDE3A Missense_Mutation p.T1076N 0.20 deleterious(0.01) probably_damaging(0.973) TCGA-19-5956-01 12 21174406 21174406 C A SLCO1B7 Missense_Mutation p.S77Y 0.56 deleterious(0.01) probably_damaging(0.935) TCGA-19-5956-01 12 21196292 21196292 A G SLCO1B7 Missense_Mutation p.D204G 0.41 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 21350014 21350014 A G SLCO1B1 Missense_Mutation p.K288E 0.10 tolerated(0.73) benign(0.074) TCGA-19-5956-01 12 21355547 21355547 T C SLCO1B1 Missense_Mutation p.S420P 0.27 deleterious(0.02) benign(0.217) TCGA-19-5956-01 12 21391985 21391985 C T SLCO1B1 Silent p.A646A 0.43 TCGA-19-5956-01 12 21427492 21427492 G A SLCO1A2 Silent p.G568G 0.14 TCGA-19-5956-01 12 21620465 21620465 C T PYROXD1 Silent p.C389C 0.43 TCGA-19-5956-01 12 21621678 21621678 A G PYROXD1 Missense_Mutation p.Y498C 0.11 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 12 21629899 21629899 C A RECQL Missense_Mutation p.D299Y 0.17 deleterious(0.01) probably_damaging(0.93) TCGA-19-5956-01 12 21715948 21715948 C A GYS2 Missense_Mutation p.K322N 0.13 tolerated(0.53) benign(0.032) TCGA-19-5956-01 12 21918796 21918796 G T KCNJ8 Missense_Mutation p.S379Y 0.13 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 12 21919066 21919066 T C KCNJ8 Missense_Mutation p.D289G 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 12 21997416 21997416 C T ABCC9 Splice_Site p.X1105_splice 0.38 TCGA-19-5956-01 12 22005042 22005042 C T ABCC9 Missense_Mutation p.E920K 0.23 deleterious(0.04) probably_damaging(0.959) TCGA-19-5956-01 12 22208469 22208469 C T CMAS Nonsense_Mutation p.R162* 0.63 TCGA-19-5956-01 12 22487195 22487195 C T ST8SIA1 5'UTR 0.31 TCGA-19-5956-01 12 22659660 22659660 G A C2CD5 Missense_Mutation p.R378C 0.19 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 12 22677460 22677460 G A C2CD5 Missense_Mutation p.R183C 0.38 deleterious(0) probably_damaging(0.957) TCGA-19-5956-01 12 24995152 24995152 G A BCAT1 Silent p.Y239Y 0.20 TCGA-19-5956-01 12 25249914 25249914 A C LRMP Missense_Mutation p.K226T 0.47 tolerated(1) benign(0.001) TCGA-19-5956-01 12 25249915 25249915 G A LRMP Silent p.K226K 0.22 TCGA-19-5956-01 12 26217610 26217610 C T RASSF8 Nonsense_Mutation p.R95* 0.17 TCGA-19-5956-01 12 2622096 2622096 G T CACNA1C Missense_Mutation p.D446Y 0.19 deleterious(0.02) possibly_damaging(0.9) TCGA-19-5956-01 12 26277095 26277095 C T BHLHE41 Silent p.P48P 0.10 TCGA-19-5956-01 12 26753031 26753031 C A ITPR2 Missense_Mutation p.K1230N 0.16 deleterious(0.01) probably_damaging(0.948) TCGA-19-5956-01 12 2676847 2676847 C T CACNA1C Silent p.F594F 0.17 TCGA-19-5956-01 12 26816674 26816674 G T ITPR2 Missense_Mutation p.L553M 0.10 tolerated(0.05) possibly_damaging(0.905) TCGA-19-5956-01 12 27066487 27066487 G A ASUN Nonsense_Mutation p.R570* 0.50 TCGA-19-5956-01 12 27107220 27107220 G T FGFR1OP2 Missense_Mutation p.M43I 0.07 deleterious(0) possibly_damaging(0.685) TCGA-19-5956-01 12 27113534 27113534 G A FGFR1OP2 Silent p.E161E 0.07 TCGA-19-5956-01 12 27127085 27127085 C T TM7SF3 Missense_Mutation p.R509Q 0.15 tolerated(0.39) benign(0.004) TCGA-19-5956-01 12 27175552 27175552 T G MED21 Missense_Mutation p.S14A 0.17 tolerated(0.45) benign(0.001) TCGA-19-5956-01 12 27181250 27181250 C T MED21 Silent p.N97N 0.22 TCGA-19-5956-01 12 27234136 27234136 C T C12orf71 Missense_Mutation p.E261K 0.16 deleterious(0.01) probably_damaging(0.951) TCGA-19-5956-01 12 27799013 27799013 G T PPFIBP1 Missense_Mutation p.G97W 0.09 deleterious(0.03) probably_damaging(0.997) TCGA-19-5956-01 12 27813822 27813822 G A PPFIBP1 Missense_Mutation p.E304K 0.44 deleterious(0) possibly_damaging(0.523) TCGA-19-5956-01 12 27849632 27849632 G T REP15 Missense_Mutation p.S46I 0.14 deleterious(0.03) possibly_damaging(0.565) TCGA-19-5956-01 12 27877003 27877003 G A MRPS35 Missense_Mutation p.A136T 0.48 deleterious(0) benign(0.319) TCGA-19-5956-01 12 28116639 28116639 G A PTHLH Nonsense_Mutation p.R56* 0.49 TCGA-19-5956-01 12 28122701 28122701 G A PTHLH Intron 0.08 TCGA-19-5956-01 12 2908295 2908295 C T FKBP4 Missense_Mutation p.R186W 0.49 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 29671491 29671491 G A TMTC1 Silent p.S646S 0.22 TCGA-19-5956-01 12 2967922 2967922 T C FOXM1 Missense_Mutation p.D763G 0.43 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 29689139 29689139 T A TMTC1 Intron 0.09 TCGA-19-5956-01 12 2977833 2977833 C T FOXM1 Missense_Mutation p.A248T 0.50 deleterious(0.02) probably_damaging(0.967) TCGA-19-5956-01 12 2983451 2983451 A G FOXM1 Missense_Mutation p.I65T 0.52 deleterious(0.03) possibly_damaging(0.848) TCGA-19-5956-01 12 3040353 3040353 C T TULP3 Missense_Mutation p.R215W 0.10 deleterious(0) probably_damaging(0.983) TCGA-19-5956-01 12 30816522 30816522 C T IPO8 Missense_Mutation p.V499I 0.48 tolerated(0.27) benign(0.105) TCGA-19-5956-01 12 30829460 30829460 C T IPO8 Missense_Mutation p.R234Q 0.25 tolerated(0.1) benign(0.206) TCGA-19-5956-01 12 30864535 30864535 C T CAPRIN2 Missense_Mutation p.G877E 0.21 deleterious(0) possibly_damaging(0.57) TCGA-19-5956-01 12 30888123 30888123 C A CAPRIN2 Missense_Mutation p.K196N 0.08 deleterious(0.02) benign(0.268) TCGA-19-5956-01 12 31242059 31242059 C T DDX11 Missense_Mutation p.R256W 0.30 deleterious(0.02) possibly_damaging(0.745) TCGA-19-5956-01 12 31249618 31249618 G A DDX11 Silent p.E523E 0.22 TCGA-19-5956-01 12 31256777 31256777 A G DDX11 Missense_Mutation p.N908S 0.15 tolerated_low_confidence(0.77) benign(0) TCGA-19-5956-01 12 31579260 31579260 G A DENND5B Silent p.F735F 0.65 TCGA-19-5956-01 12 31586021 31586021 C A DENND5B Intron 0.11 TCGA-19-5956-01 12 31586145 31586145 T C DENND5B Missense_Mutation p.K684E 0.06 deleterious(0.04) benign(0.081) TCGA-19-5956-01 12 31815085 31815085 A T METTL20 Missense_Mutation p.E66D 0.49 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 12 31841954 31841954 G A AMN1 Silent p.C230C 0.53 TCGA-19-5956-01 12 32135742 32135742 C A KIAA1551 Missense_Mutation p.P618Q 0.30 tolerated(0.42) benign(0.066) TCGA-19-5956-01 12 32135844 32135844 G A KIAA1551 Missense_Mutation p.G652E 0.39 tolerated(1) benign(0) TCGA-19-5956-01 12 32137173 32137173 C T KIAA1551 Missense_Mutation p.S1095F 0.51 deleterious(0.02) benign(0.367) TCGA-19-5956-01 12 32137305 32137305 C T KIAA1551 Missense_Mutation p.P1139L 0.17 tolerated(0.13) benign(0.079) TCGA-19-5956-01 12 32137479 32137479 C A KIAA1551 Missense_Mutation p.S1197Y 0.26 deleterious(0.01) benign(0.006) TCGA-19-5956-01 12 32487524 32487524 G A BICD1 Silent p.T725T 0.12 TCGA-19-5956-01 12 32777386 32777386 G T FGD4 Missense_Mutation p.K514N 0.30 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 12 32890049 32890049 G T DNM1L Missense_Mutation p.R517I 0.37 tolerated(0.05) benign(0.222) TCGA-19-5956-01 12 32945277 32945277 G A PKP2 3'UTR 0.22 TCGA-19-5956-01 12 32974365 32974365 G A PKP2 Silent p.I690I 0.14 TCGA-19-5956-01 12 33003767 33003767 A C PKP2 Missense_Mutation p.N437K 0.45 tolerated(0.54) benign(0.005) TCGA-19-5956-01 12 33031961 33031961 G A PKP2 Missense_Mutation p.L77F 0.40 tolerated(0.05) probably_damaging(0.999) TCGA-19-5956-01 12 33559769 33559769 G T SYT10 Silent p.L344L 0.20 TCGA-19-5956-01 12 34179670 34179670 A C ALG10 Missense_Mutation p.E414D 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 3692250 3692250 G A PRMT8 Silent p.T285T 0.26 TCGA-19-5956-01 12 39069569 39069569 T G CPNE8 Missense_Mutation p.K461T 0.12 tolerated(0.3) benign(0.049) TCGA-19-5956-01 12 39170104 39170104 C A CPNE8 Splice_Site p.X136_splice 0.21 TCGA-19-5956-01 12 39688135 39688135 C T KIF21A 3'Flank 0.33 TCGA-19-5956-01 12 39701481 39701481 C T KIF21A Missense_Mutation p.R1443Q 0.10 deleterious(0.02) probably_damaging(0.996) TCGA-19-5956-01 12 39719647 39719647 C A KIF21A Missense_Mutation p.K1150N 0.10 deleterious(0.02) possibly_damaging(0.552) TCGA-19-5956-01 12 39967644 39967644 C A ABCD2 Splice_Site p.X626_splice 0.14 TCGA-19-5956-01 12 40013275 40013275 C T ABCD2 Missense_Mutation p.G48D 0.17 tolerated(0.46) benign(0.001) TCGA-19-5956-01 12 40076519 40076519 T A C12orf40 Missense_Mutation p.S265T 0.10 tolerated(0.22) benign(0.009) TCGA-19-5956-01 12 40076805 40076805 C T C12orf40 Missense_Mutation p.S360L 0.25 deleterious(0.01) possibly_damaging(0.885) TCGA-19-5956-01 12 40114849 40114849 C T C12orf40 Silent p.C585C 0.27 TCGA-19-5956-01 12 40422284 40422284 C T SLC2A13 Silent p.P248P 0.07 TCGA-19-5956-01 12 41303893 41303893 G T CNTN1 Missense_Mutation p.R27I 0.06 tolerated(0.46) benign(0.015) TCGA-19-5956-01 12 41330582 41330582 G A CNTN1 Splice_Site p.X329_splice 0.10 TCGA-19-5956-01 12 41333142 41333142 G A CNTN1 Missense_Mutation p.A412T 0.09 deleterious(0) probably_damaging(0.91) TCGA-19-5956-01 12 41374857 41374857 G T CNTN1 Missense_Mutation p.D651Y 0.22 deleterious(0.03) probably_damaging(0.982) TCGA-19-5956-01 12 41831798 41831798 C T PDZRN4 Intron 0.47 TCGA-19-5956-01 12 42711628 42711628 G T ZCRB1 Missense_Mutation p.D62E 0.13 tolerated(1) benign(0.002) TCGA-19-5956-01 12 42768733 42768733 A C PPHLN1 Missense_Mutation p.Y123S 0.09 deleterious(0.01) benign(0.039) TCGA-19-5956-01 12 42853486 42853486 G A PRICKLE1 3'UTR 0.24 TCGA-19-5956-01 12 42854460 42854460 C T PRICKLE1 Silent p.S549S 0.43 TCGA-19-5956-01 12 438026 438026 C T KDM5A Missense_Mutation p.R648Q 0.47 tolerated(0.15) benign(0.024) TCGA-19-5956-01 12 44130335 44130335 G T PUS7L Missense_Mutation p.S525Y 0.12 deleterious(0) benign(0.378) TCGA-19-5956-01 12 44180519 44180519 A T IRAK4 3'UTR 0.40 TCGA-19-5956-01 12 44238472 44238472 T C TMEM117 Silent p.R6R 0.45 TCGA-19-5956-01 12 44913865 44913865 C T NELL2 Missense_Mutation p.D825N 0.34 deleterious(0.02) probably_damaging(0.993) TCGA-19-5956-01 12 45059316 45059316 C T NELL2 Missense_Mutation p.M515I 0.46 tolerated(0.39) benign(0.076) TCGA-19-5956-01 12 45209884 45209884 C T NELL2 Missense_Mutation p.A124T 0.34 tolerated(0.72) probably_damaging(0.993) TCGA-19-5956-01 12 45417584 45417584 C A DBX2 Missense_Mutation p.R198I 0.51 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 12 45742094 45742094 G A ANO6 Missense_Mutation p.R231H 0.20 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 12 45797236 45797236 C T ANO6 Silent p.G620G 0.37 TCGA-19-5956-01 12 46231366 46231366 G A ARID2 Silent p.E402E 0.50 TCGA-19-5956-01 12 46244666 46244666 G A ARID2 Silent p.Q920Q 0.19 TCGA-19-5956-01 12 46320530 46320530 C A SCAF11 Missense_Mutation p.R985I 0.10 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 12 46320680 46320680 G T SCAF11 Missense_Mutation p.S935Y 0.41 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 46322510 46322510 C T SCAF11 Missense_Mutation p.R325H 0.26 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 4645247 4645247 C T C12orf4 Silent p.E38E 0.41 TCGA-19-5956-01 12 4722774 4722774 G T DYRK4 Missense_Mutation p.G473V 0.22 tolerated_low_confidence(0.6) benign(0.001) TCGA-19-5956-01 12 4722997 4722997 G T DYRK4 3'UTR 0.19 TCGA-19-5956-01 12 48075591 48075591 T G RPAP3 Missense_Mutation p.E334D 0.45 tolerated(0.07) probably_damaging(0.973) TCGA-19-5956-01 12 48177641 48177641 C A HDAC7 Nonsense_Mutation p.E987* 0.30 TCGA-19-5956-01 12 48183341 48183341 C A HDAC7 Silent p.R704R 0.17 TCGA-19-5956-01 12 48251326 48251326 C A VDR Missense_Mutation p.K191N 0.44 deleterious(0.03) benign(0.255) TCGA-19-5956-01 12 48360477 48360477 C T TMEM106C Silent p.T188T 0.17 TCGA-19-5956-01 12 48388212 48388212 G T COL2A1 Missense_Mutation p.P271T 0.26 unknown(0) TCGA-19-5956-01 12 48501233 48501233 G A PFKM Missense_Mutation p.R26K 0.47 tolerated_low_confidence(0.4) benign(0) TCGA-19-5956-01 12 48578115 48578115 G A C12orf68 Silent p.S70S 0.44 TCGA-19-5956-01 12 48596567 48596567 C T OR10AD1 Missense_Mutation p.R170H 0.55 tolerated(0.05) benign(0.038) TCGA-19-5956-01 12 48596994 48596994 A C OR10AD1 Missense_Mutation p.F28V 0.14 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 12 48866658 48866658 C T ANP32D Silent p.L71L 0.44 TCGA-19-5956-01 12 48920036 48920036 C T OR8S1 Silent p.L208L 0.43 TCGA-19-5956-01 12 4920408 4920408 G A KCNA6 Missense_Mutation p.D401N 0.19 tolerated(0.28) benign(0.011) TCGA-19-5956-01 12 49227168 49227168 C A DDX23 Missense_Mutation p.K565N 0.12 tolerated(0.11) possibly_damaging(0.875) TCGA-19-5956-01 12 49374943 49374943 C A WNT1 Missense_Mutation p.F211L 0.14 tolerated(0.33) benign(0.003) TCGA-19-5956-01 12 49440198 49440198 G T KMT2D Silent p.S1476S 0.14 TCGA-19-5956-01 12 49666830 49666830 C T TUBA1C Silent p.R390R 0.10 TCGA-19-5956-01 12 49742802 49742802 C A DNAJC22 Missense_Mutation p.F49L 0.17 tolerated(0.45) benign(0.302) TCGA-19-5956-01 12 50036838 50036838 G A FMNL3 3'UTR 0.17 TCGA-19-5956-01 12 50037497 50037497 A G PRPF40B Missense_Mutation p.K802E 0.33 tolerated_low_confidence(0.09) possibly_damaging(0.828) TCGA-19-5956-01 12 50041566 50041566 G A FMNL3 Missense_Mutation p.R900C 0.19 deleterious(0) benign(0.002) TCGA-19-5956-01 12 50189311 50189311 C A NCKAP5L Missense_Mutation p.A778S 0.20 tolerated(0.45) probably_damaging(0.999) TCGA-19-5956-01 12 50295030 50295030 G T FAIM2 Missense_Mutation p.P32T 0.18 deleterious(0) benign(0.367) TCGA-19-5956-01 12 51125244 51125244 T C DIP2B Missense_Mutation p.I1245T 0.14 deleterious(0.02) benign(0.105) TCGA-19-5956-01 12 51203301 51203301 C A ATF1 Missense_Mutation p.S86Y 0.12 deleterious(0.02) benign(0.003) TCGA-19-5956-01 12 51319290 51319290 C A METTL7A Missense_Mutation p.L157I 0.40 deleterious(0.01) probably_damaging(0.941) TCGA-19-5956-01 12 51450284 51450284 C T LETMD1 Missense_Mutation p.S318L 0.42 tolerated(0.31) benign(0.005) TCGA-19-5956-01 12 51493459 51493459 C T TFCP2 Missense_Mutation p.D419N 0.38 tolerated(0.22) benign(0.001) TCGA-19-5956-01 12 51497473 51497473 C A TFCP2 Missense_Mutation p.R347M 0.19 deleterious(0) possibly_damaging(0.819) TCGA-19-5956-01 12 51500356 51500356 G T TFCP2 Missense_Mutation p.P290Q 0.12 tolerated(0.06) benign(0.21) TCGA-19-5956-01 12 5154643 5154643 G A KCNA5 Missense_Mutation p.G444R 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 5154705 5154705 C A KCNA5 Missense_Mutation p.F464L 0.48 deleterious(0.02) probably_damaging(0.976) TCGA-19-5956-01 12 51689603 51689603 G T BIN2 Silent p.V246V 0.15 TCGA-19-5956-01 12 52145229 52145229 A C SCN8A Missense_Mutation p.K741T 0.44 deleterious(0.02) benign(0.008) TCGA-19-5956-01 12 52145290 52145290 C A SCN8A Silent p.I761I 0.07 TCGA-19-5956-01 12 52281796 52281796 C T ANKRD33 5'UTR 0.30 TCGA-19-5956-01 12 52282866 52282866 G A ANKRD33 Missense_Mutation p.A138T 0.47 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 12 52284731 52284731 C T ANKRD33 Missense_Mutation p.S334L 0.40 tolerated(0.28) benign(0.03) TCGA-19-5956-01 12 52699493 52699493 G A KRT86 Missense_Mutation p.R316H 0.51 tolerated(0.07) benign(0.018) TCGA-19-5956-01 12 52789558 52789558 C T KRT82 Missense_Mutation p.G436R 0.27 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 12 52843637 52843637 C A KRT6B Missense_Mutation p.D273Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 12 53012014 53012014 A G KRT73 Missense_Mutation p.C99R 0.22 deleterious(0.01) possibly_damaging(0.671) TCGA-19-5956-01 12 53012301 53012301 C T KRT73 Missense_Mutation p.R3H 0.12 deleterious(0.01) probably_damaging(0.994) TCGA-19-5956-01 12 53096721 53096721 C T KRT77 Silent p.E166E 0.46 TCGA-19-5956-01 12 53164782 53164782 C T KRT76 Splice_Site p.X495_splice 0.12 TCGA-19-5956-01 12 53186540 53186540 A G KRT3 Silent p.D326D 0.19 TCGA-19-5956-01 12 53203181 53203181 C G KRT4 Missense_Mutation p.V274L 0.11 tolerated(0.12) benign(0.046) TCGA-19-5956-01 12 53207886 53207886 C T KRT4 5'UTR 0.18 TCGA-19-5956-01 12 53238433 53238433 G A KRT78 Silent p.D277D 0.23 TCGA-19-5956-01 12 53455011 53455011 C T TENC1 Silent p.F1117F 0.50 TCGA-19-5956-01 12 53459652 53459652 C A SPRYD3 Missense_Mutation p.E431D 0.23 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 12 53586644 53586644 C A ITGB7 Missense_Mutation p.G593C 0.09 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 12 53647094 53647094 C T MFSD5 Missense_Mutation p.R266W 0.43 deleterious(0.02) probably_damaging(0.922) TCGA-19-5956-01 12 53898584 53898584 C T TARBP2 Missense_Mutation p.R200C 0.37 deleterious(0.03) possibly_damaging(0.832) TCGA-19-5956-01 12 54105941 54105941 G A CALCOCO1 Intron 0.56 TCGA-19-5956-01 12 54688919 54688919 C A NFE2 Missense_Mutation p.Q38H 0.17 deleterious(0) possibly_damaging(0.466) TCGA-19-5956-01 12 54903520 54903520 G T NCKAP1L Nonsense_Mutation p.E192* 0.12 TCGA-19-5956-01 12 54917225 54917225 G T NCKAP1L Missense_Mutation p.K642N 0.50 deleterious(0.01) possibly_damaging(0.888) TCGA-19-5956-01 12 54966478 54966478 G A PDE1B Missense_Mutation p.D230N 0.45 deleterious(0) probably_damaging(0.953) TCGA-19-5956-01 12 54967393 54967393 G T PDE1B Nonsense_Mutation p.E322* 0.20 TCGA-19-5956-01 12 55357630 55357630 C T TESPA1 Missense_Mutation p.R184Q 0.48 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 12 55523649 55523649 G T OR9K2 Nonsense_Mutation p.E33* 0.08 TCGA-19-5956-01 12 55523667 55523667 C A OR9K2 Missense_Mutation p.L39I 0.47 deleterious(0) possibly_damaging(0.899) TCGA-19-5956-01 12 55714742 55714742 G A OR6C1 Missense_Mutation p.R120H 0.54 deleterious_low_confidence(0.02) benign(0.082) TCGA-19-5956-01 12 55714789 55714789 C T OR6C1 Nonsense_Mutation p.R136* 0.18 TCGA-19-5956-01 12 55863564 55863564 C T OR6C70 Missense_Mutation p.R120H 0.20 deleterious_low_confidence(0.03) benign(0.127) TCGA-19-5956-01 12 56182916 56182916 A G SARNP Silent p.D148D 0.59 TCGA-19-5956-01 12 56332729 56332729 C T DGKA Nonsense_Mutation p.R144* 0.38 TCGA-19-5956-01 12 56547784 56547784 G T MYL6B Missense_Mutation p.G28W 0.17 deleterious_low_confidence(0.04) unknown(0) TCGA-19-5956-01 12 56645986 56645986 T C ANKRD52 Missense_Mutation p.Y495C 0.21 deleterious(0.03) benign(0.398) TCGA-19-5956-01 12 56650806 56650806 C T ANKRD52 Missense_Mutation p.R85Q 0.40 tolerated(0.32) possibly_damaging(0.597) TCGA-19-5956-01 12 56826295 56826295 T C TIMELESS Missense_Mutation p.D182G 0.27 deleterious(0.01) probably_damaging(0.911) TCGA-19-5956-01 12 56847392 56847392 G T MIP Missense_Mutation p.L170M 0.14 deleterious(0.05) benign(0.25) TCGA-19-5956-01 12 56847453 56847453 G A MIP Silent p.Y149Y 0.10 TCGA-19-5956-01 12 56866517 56866517 G T GLS2 Missense_Mutation p.L490M 0.18 tolerated(0.07) possibly_damaging(0.861) TCGA-19-5956-01 12 56996593 56996593 G A BAZ2A Missense_Mutation p.R1112W 0.62 deleterious(0) possibly_damaging(0.881) TCGA-19-5956-01 12 57397342 57397342 C T ZBTB39 Missense_Mutation p.A454T 0.41 deleterious(0.03) benign(0.266) TCGA-19-5956-01 12 57430770 57430770 G A MYO1A Nonsense_Mutation p.R721* 0.24 TCGA-19-5956-01 12 57435031 57435031 C A MYO1A Missense_Mutation p.E402D 0.50 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 12 57442030 57442030 C A MYO1A Missense_Mutation p.K26N 0.15 tolerated(0.5) benign(0.052) TCGA-19-5956-01 12 5744345 5744345 C T ANO2 Missense_Mutation p.A597T 0.47 tolerated(0.06) benign(0.245) TCGA-19-5956-01 12 57559698 57559698 G A LRP1 Missense_Mutation p.D881N 0.51 probably_damaging(1) TCGA-19-5956-01 12 57596274 57596274 C T LRP1 Silent p.C3555C 0.21 TCGA-19-5956-01 12 57619440 57619440 C A NXPH4 Silent p.I279I 0.30 TCGA-19-5956-01 12 57626331 57626331 C T SHMT2 Silent p.R230R 0.05 TCGA-19-5956-01 12 57864145 57864145 G A GLI1 Missense_Mutation p.R541H 0.11 tolerated(0.05) benign(0.012) TCGA-19-5956-01 12 57864605 57864605 G A GLI1 Silent p.E694E 0.25 TCGA-19-5956-01 12 57868746 57868746 G A ARHGAP9 Silent p.F521F 0.27 TCGA-19-5956-01 12 57962833 57962833 G A KIF5A Missense_Mutation p.A268T 0.28 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 12 57989684 57989684 G A PIP4K2C Missense_Mutation p.R128Q 0.08 tolerated(0.1) possibly_damaging(0.577) TCGA-19-5956-01 12 58002913 58002913 C T DTX3 Missense_Mutation p.A341V 0.26 tolerated(0.26) benign(0.031) TCGA-19-5956-01 12 58013916 58013916 G A SLC26A10 5'UTR 0.41 TCGA-19-5956-01 12 58018908 58018908 G T SLC26A10 Missense_Mutation p.E449D 0.45 tolerated(0.44) benign(0.173) TCGA-19-5956-01 12 58204607 58204607 G A AVIL Missense_Mutation p.R184C 0.06 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 12 58204623 58204623 C A AVIL Missense_Mutation p.E178D 0.08 tolerated(0.11) benign(0.06) TCGA-19-5956-01 12 58347459 58347459 A C XRCC6BP1 Missense_Mutation p.K175T 0.12 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 12 59266310 59266310 C A LRIG3 3'UTR 0.29 TCGA-19-5956-01 12 59267863 59267863 G A LRIG3 Missense_Mutation p.S1030L 0.13 tolerated_low_confidence(0.21) benign(0.002) TCGA-19-5956-01 12 59268009 59268009 G A LRIG3 Silent p.C981C 0.16 TCGA-19-5956-01 12 59272881 59272881 G A LRIG3 Missense_Mutation p.P603L 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 6061639 6061639 A G VWF Missense_Mutation p.V2678A 0.41 deleterious(0.03) possibly_damaging(0.539) TCGA-19-5956-01 12 6128126 6128126 C T VWF Silent p.S1486S 0.46 TCGA-19-5956-01 12 62777924 62777924 T G USP15 Missense_Mutation p.F438L 0.55 deleterious(0) possibly_damaging(0.867) TCGA-19-5956-01 12 62785611 62785611 C A USP15 Missense_Mutation p.A750D 0.21 deleterious(0) possibly_damaging(0.562) TCGA-19-5956-01 12 62785638 62785638 A T USP15 Missense_Mutation p.K759I 0.27 deleterious(0) benign(0.222) TCGA-19-5956-01 12 62931891 62931891 C A MON2 Missense_Mutation p.L712M 0.16 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 12 63042180 63042180 G A PPM1H 3'UTR 0.29 TCGA-19-5956-01 12 63954162 63954162 C T DPY19L2 3'UTR 0.58 TCGA-19-5956-01 12 64199152 64199152 C T TMEM5 Silent p.N294N 0.21 TCGA-19-5956-01 12 6424803 6424803 G T PLEKHG6 Missense_Mutation p.K181N 0.19 deleterious(0.01) benign(0.314) TCGA-19-5956-01 12 6426547 6426547 G T PLEKHG6 Nonsense_Mutation p.E279* 0.09 TCGA-19-5956-01 12 64519891 64519891 G A SRGAP1 Missense_Mutation p.G787R 0.09 deleterious(0) possibly_damaging(0.902) TCGA-19-5956-01 12 64536284 64536284 C A SRGAP1 Silent p.S1030S 0.54 TCGA-19-5956-01 12 64803779 64803779 C A XPOT 5'UTR 0.15 TCGA-19-5956-01 12 64828404 64828404 G A XPOT Splice_Site p.X857_splice 0.18 TCGA-19-5956-01 12 65448911 65448911 T C WIF1 Silent p.R335R 0.25 TCGA-19-5956-01 12 65564198 65564198 G T LEMD3 Missense_Mutation p.Q274H 0.11 tolerated_low_confidence(0.07) benign(0.011) TCGA-19-5956-01 12 6571249 6571249 C A TAPBPL Silent p.S447S 0.56 TCGA-19-5956-01 12 66221789 66221789 C T HMGA2 Silent p.T40T 0.46 TCGA-19-5956-01 12 66547207 66547207 C A TMBIM4 Missense_Mutation p.S40I 0.41 deleterious(0.03) possibly_damaging(0.691) TCGA-19-5956-01 12 66642092 66642092 G T IRAK3 3'UTR 0.40 TCGA-19-5956-01 12 66717957 66717957 G A HELB Missense_Mutation p.R831Q 0.26 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 66747253 66747253 G A GRIP1 Missense_Mutation p.R983C 0.43 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 12 66747278 66747278 C A GRIP1 Missense_Mutation p.E974D 0.09 tolerated(0.16) benign(0.072) TCGA-19-5956-01 12 66849199 66849199 G T GRIP1 Missense_Mutation p.F396L 0.43 tolerated(0.27) benign(0.059) TCGA-19-5956-01 12 6700689 6700689 G A CHD4 Missense_Mutation p.R1095C 0.07 deleterious(0) probably_damaging(0.965) TCGA-19-5956-01 12 6709710 6709710 C A CHD4 Missense_Mutation p.K351N 0.51 deleterious(0.03) possibly_damaging(0.788) TCGA-19-5956-01 12 674671 674671 C T NINJ2 Intron 0.33 TCGA-19-5956-01 12 67691539 67691539 G T CAND1 Nonsense_Mutation p.E254* 0.09 TCGA-19-5956-01 12 67699217 67699217 T A CAND1 Missense_Mutation p.I590N 0.25 deleterious(0) probably_damaging(0.959) TCGA-19-5956-01 12 67701195 67701195 G A CAND1 Missense_Mutation p.S983N 0.11 deleterious(0.01) possibly_damaging(0.567) TCGA-19-5956-01 12 6839867 6839867 G A COPS7A Silent p.T223T 0.14 TCGA-19-5956-01 12 68551719 68551719 C A IFNG Missense_Mutation p.D114Y 0.10 deleterious(0.01) possibly_damaging(0.661) TCGA-19-5956-01 12 69050972 69050972 C A RAP1B 3'UTR 0.38 TCGA-19-5956-01 12 69230520 69230520 T G MDM2 Missense_Mutation p.I303M 0.06 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 12 69233176 69233176 C A MDM2 Silent p.I347I 0.09 TCGA-19-5956-01 12 6928607 6928607 C T CD4 3'UTR 0.48 TCGA-19-5956-01 12 6936268 6936268 G A GPR162 Missense_Mutation p.A556T 0.22 tolerated_low_confidence(0.79) benign(0) TCGA-19-5956-01 12 6958492 6958492 G A CDCA3 Nonsense_Mutation p.R216* 0.16 TCGA-19-5956-01 12 6964676 6964676 C T USP5 Missense_Mutation p.R75W 0.27 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 12 69652480 69652480 C A CPSF6 Silent p.R269R 0.14 TCGA-19-5956-01 12 69980554 69980554 G A CCT2 Missense_Mutation p.A34T 0.06 tolerated(0.06) benign(0.083) TCGA-19-5956-01 12 69992153 69992153 G A CCT2 Missense_Mutation p.A463T 0.21 tolerated(0.41) benign(0.005) TCGA-19-5956-01 12 70048963 70048963 G A BEST3 Silent p.N577N 0.25 TCGA-19-5956-01 12 70049479 70049479 G T BEST3 Silent p.P405P 0.25 TCGA-19-5956-01 12 70088193 70088193 G A BEST3 Silent p.Y68Y 0.30 TCGA-19-5956-01 12 70091528 70091528 A C BEST3 Missense_Mutation p.F17L 0.23 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 12 7015747 7015747 G T LRRC23 Missense_Mutation p.Q137H 0.24 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 7015801 7015801 T C LRRC23 Silent p.P155P 0.46 TCGA-19-5956-01 12 70794057 70794057 G T KCNMB4 Missense_Mutation p.Q135H 0.21 tolerated(0.09) benign(0.382) TCGA-19-5956-01 12 7083817 7083817 G A EMG1 Missense_Mutation p.R124Q 0.46 deleterious(0) TCGA-19-5956-01 12 7090234 7090234 G T LPCAT3 Missense_Mutation p.F203L 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 12 70946613 70946613 G A PTPRB Silent p.C1777C 0.08 TCGA-19-5956-01 12 70956787 70956787 G T PTPRB Silent p.I1335I 0.11 TCGA-19-5956-01 12 7177333 7177333 A G C1S Missense_Mutation p.E482G 0.36 tolerated(0.32) benign(0.158) TCGA-19-5956-01 12 7177504 7177504 T C C1S Missense_Mutation p.V539A 0.09 deleterious(0.03) probably_damaging(0.925) TCGA-19-5956-01 12 71953433 71953433 C A LGR5 Missense_Mutation p.L262I 0.44 deleterious(0) possibly_damaging(0.9) TCGA-19-5956-01 12 71960190 71960190 C A LGR5 Missense_Mutation p.F288L 0.24 tolerated(0.6) possibly_damaging(0.849) TCGA-19-5956-01 12 71978362 71978362 G A LGR5 Missense_Mutation p.E858K 0.12 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 12 72017290 72017290 G T ZFC3H1 Missense_Mutation p.L1532I 0.18 tolerated(0.11) benign(0.256) TCGA-19-5956-01 12 72020090 72020090 T C ZFC3H1 Missense_Mutation p.M1423V 0.25 deleterious(0) possibly_damaging(0.842) TCGA-19-5956-01 12 72025600 72025600 A G ZFC3H1 Missense_Mutation p.F1143S 0.42 deleterious(0) probably_damaging(0.962) TCGA-19-5956-01 12 72037882 72037882 C A ZFC3H1 Missense_Mutation p.R499I 0.19 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 12 72314592 72314592 A C TBC1D15 Missense_Mutation p.M578L 0.38 deleterious(0.03) benign(0.021) TCGA-19-5956-01 12 72338170 72338170 G T TPH2 Nonsense_Mutation p.E118* 0.22 TCGA-19-5956-01 12 7480932 7480932 G A ACSM4 Missense_Mutation p.R569H 0.21 deleterious(0.01) possibly_damaging(0.617) TCGA-19-5956-01 12 7521957 7521957 G A CD163L1 Silent p.C1345C 0.23 TCGA-19-5956-01 12 7526055 7526056 - A CD163L1 Frame_Shift_Ins p.L1197Ffs*3 0.20 TCGA-19-5956-01 12 7527944 7527944 G A CD163L1 Silent p.N978N 0.21 TCGA-19-5956-01 12 75785008 75785008 T C GLIPR1L2 Missense_Mutation p.S38P 0.44 tolerated(0.08) possibly_damaging(0.823) TCGA-19-5956-01 12 75874698 75874698 C A GLIPR1 Missense_Mutation p.S13Y 0.44 tolerated(0.35) benign(0.235) TCGA-19-5956-01 12 7640096 7640096 G A CD163 Missense_Mutation p.R637C 0.10 deleterious(0.01) possibly_damaging(0.505) TCGA-19-5956-01 12 7640450 7640450 A G CD163 Missense_Mutation p.S552P 0.37 tolerated(0.52) probably_damaging(0.962) TCGA-19-5956-01 12 76444333 76444333 G T NAP1L1 Missense_Mutation p.A346D 0.10 deleterious(0.02) benign(0.125) TCGA-19-5956-01 12 7647752 7647752 G T CD163 Missense_Mutation p.L449I 0.45 tolerated(0.22) benign(0.029) TCGA-19-5956-01 12 7647881 7647881 C A CD163 Nonsense_Mutation p.E406* 0.08 TCGA-19-5956-01 12 77252618 77252618 G A CSRP2 3'UTR 0.33 TCGA-19-5956-01 12 78225228 78225228 A C NAV3 5'UTR 0.21 TCGA-19-5956-01 12 7882223 7882223 G T CLEC4C Nonsense_Mutation p.S204* 0.19 TCGA-19-5956-01 12 7966798 7966798 G T SLC2A14 3'UTR 0.23 TCGA-19-5956-01 12 7984225 7984225 C T SLC2A14 Missense_Mutation p.G106R 0.41 deleterious(0.03) probably_damaging(0.933) TCGA-19-5956-01 12 80611395 80611395 G A OTOGL Silent p.P53P 0.29 TCGA-19-5956-01 12 81111163 81111163 G T MYF5 Missense_Mutation p.K107N 0.10 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 12 81111240 81111240 G A MYF5 Missense_Mutation p.S133N 0.12 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 12 81647409 81647409 G A ACSS3 Missense_Mutation p.R652Q 0.45 deleterious(0) probably_damaging(1) TCGA-19-5956-01 12 8195263 8195263 C T FOXJ2 Missense_Mutation p.R115W 0.13 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 8245642 8245642 A G NECAP1 Missense_Mutation p.S223G 0.23 tolerated(0.13) benign(0.01) TCGA-19-5956-01 12 82748291 82748291 G A CCDC59 Missense_Mutation p.R183C 0.20 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 12 82792794 82792794 A C METTL25 Missense_Mutation p.K251T 0.09 tolerated(0.1) benign(0.049) TCGA-19-5956-01 12 83526051 83526051 C T TMTC2 Silent p.A798A 0.46 TCGA-19-5956-01 12 83526211 83526211 G A TMTC2 3'UTR 0.27 TCGA-19-5956-01 12 8374456 8374456 G A FAM90A1 Missense_Mutation p.P453S 0.34 tolerated(1) unknown(0) TCGA-19-5956-01 12 85277460 85277460 T C SLC6A15 Intron 0.13 TCGA-19-5956-01 12 85277574 85277574 T G SLC6A15 Intron 0.11 TCGA-19-5956-01 12 85285892 85285892 T G SLC6A15 Missense_Mutation p.K3T 0.09 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-19-5956-01 12 85450255 85450255 G T LRRIQ1 Nonsense_Mutation p.E562* 0.39 TCGA-19-5956-01 12 86373705 86373705 G T MGAT4C Missense_Mutation p.H267N 0.24 tolerated(0.44) benign(0.004) TCGA-19-5956-01 12 8765417 8765417 C A AICDA 5'UTR 0.11 TCGA-19-5956-01 12 88381650 88381650 T G C12orf50 Missense_Mutation p.K265T 0.15 tolerated_low_confidence(0.18) possibly_damaging(0.479) TCGA-19-5956-01 12 88391827 88391827 C A C12orf50 Missense_Mutation p.V92L 0.28 tolerated(0.07) benign(0.01) TCGA-19-5956-01 12 88420776 88420776 C A C12orf50 5'UTR 0.08 TCGA-19-5956-01 12 88452703 88452703 C A CEP290 Missense_Mutation p.R2247I 0.21 possibly_damaging(0.767) TCGA-19-5956-01 12 88535003 88535003 A C CEP290 Missense_Mutation p.L28V 0.08 possibly_damaging(0.641) TCGA-19-5956-01 12 88560358 88560358 T C TMTC3 Missense_Mutation p.M350T 0.25 deleterious(0) possibly_damaging(0.908) TCGA-19-5956-01 12 8926164 8926164 T C RIMKLB Silent p.R315R 0.12 TCGA-19-5956-01 12 89745756 89745756 C T DUSP6 Missense_Mutation p.A21T 0.39 tolerated(0.56) benign(0.147) TCGA-19-5956-01 12 89814955 89814955 A C POC1B Missense_Mutation p.F471C 0.40 tolerated(0.06) benign(0.003) TCGA-19-5956-01 12 89885741 89885741 G A POC1B Nonsense_Mutation p.R142* 0.47 TCGA-19-5956-01 12 8995748 8995748 G T A2ML1 Missense_Mutation p.D423Y 0.15 deleterious(0) possibly_damaging(0.832) TCGA-19-5956-01 12 90005017 90005017 G T ATP2B1 Missense_Mutation p.L734I 0.23 tolerated(0.13) benign(0.011) TCGA-19-5956-01 12 9001490 9001490 G T A2ML1 Missense_Mutation p.D670Y 0.19 deleterious(0.02) benign(0.259) TCGA-19-5956-01 12 90049749 90049749 G T ATP2B1 5'UTR 0.31 TCGA-19-5956-01 12 9020915 9020915 G A A2ML1 Silent p.P1341P 0.43 TCGA-19-5956-01 12 9091969 9091969 G T PHC1 Nonsense_Mutation p.E977* 0.24 TCGA-19-5956-01 12 9098953 9098953 G T M6PR Silent p.L16L 0.07 TCGA-19-5956-01 12 91347454 91347454 C A CCER1 Nonsense_Mutation p.E356* 0.17 TCGA-19-5956-01 12 91347755 91347755 C A CCER1 Missense_Mutation p.Q255H 0.10 deleterious(0.02) benign(0.003) TCGA-19-5956-01 12 91371950 91371950 C A EPYC Missense_Mutation p.E85D 0.23 tolerated(0.28) benign(0.004) TCGA-19-5956-01 12 91445140 91445140 G C KERA Missense_Mutation p.Q348E 0.37 deleterious(0.02) benign(0.097) TCGA-19-5956-01 12 91449844 91449844 C T KERA Missense_Mutation p.R72K 0.21 deleterious(0.02) possibly_damaging(0.826) TCGA-19-5956-01 12 91502238 91502238 C A LUM Missense_Mutation p.E173D 0.23 tolerated(0.83) benign(0.008) TCGA-19-5956-01 12 91558423 91558423 C T DCN Missense_Mutation p.E95K 0.18 tolerated(0.09) possibly_damaging(0.563) TCGA-19-5956-01 12 9232320 9232320 A G A2M Silent p.P982P 0.34 TCGA-19-5956-01 12 9305427 9305427 T C PZP Missense_Mutation p.T1372A 0.13 deleterious(0.02) benign(0.005) TCGA-19-5956-01 12 93162806 93162806 C T PLEKHG7 Nonsense_Mutation p.R328* 0.21 TCGA-19-5956-01 12 93169717 93169717 G T EEA1 3'UTR 0.58 TCGA-19-5956-01 12 93172951 93172951 G A EEA1 Silent p.D1198D 0.39 TCGA-19-5956-01 12 93862995 93862995 G A MRPL42 5'UTR 0.48 TCGA-19-5956-01 12 94620970 94620970 C T PLXNC1 Missense_Mutation p.P647S 0.18 tolerated(0.41) benign(0) TCGA-19-5956-01 12 94634391 94634391 A G PLXNC1 Missense_Mutation p.I751V 0.07 tolerated(1) benign(0.001) TCGA-19-5956-01 12 95456419 95456419 G A NR2C1 Silent p.D50D 0.42 TCGA-19-5956-01 12 95566384 95566384 C A FGD6 Missense_Mutation p.D860Y 0.28 tolerated(0.09) benign(0.021) TCGA-19-5956-01 12 95660407 95660407 C A VEZT Missense_Mutation p.L237M 0.12 tolerated(0.12) probably_damaging(0.992) TCGA-19-5956-01 12 95868051 95868051 G T METAP2 Missense_Mutation p.E32D 0.42 tolerated_low_confidence(0.08) benign(0.002) TCGA-19-5956-01 12 95907754 95907754 C T METAP2 3'UTR 0.47 TCGA-19-5956-01 12 95927141 95927141 G A USP44 Nonsense_Mutation p.R298* 0.25 TCGA-19-5956-01 12 96180767 96180767 C T NTN4 Missense_Mutation p.A179T 0.49 tolerated(0.05) possibly_damaging(0.746) TCGA-19-5956-01 12 96396807 96396807 T C LTA4H Missense_Mutation p.D550G 0.21 tolerated(0.11) benign(0.002) TCGA-19-5956-01 12 96407632 96407632 C A LTA4H Splice_Site p.X402_splice 0.17 TCGA-19-5956-01 12 96641242 96641242 G A ELK3 Silent p.P244P 0.28 TCGA-19-5956-01 12 96641315 96641315 G A ELK3 Missense_Mutation p.D269N 0.24 tolerated(0.19) possibly_damaging(0.906) TCGA-19-5956-01 12 96679917 96679917 G A CDK17 Missense_Mutation p.S409F 0.17 deleterious(0) benign(0.325) TCGA-19-5956-01 12 96688837 96688837 C T CDK17 Missense_Mutation p.D313N 0.17 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 12 97082693 97082693 G T C12orf55 Splice_Site p.X2005_splice 0.25 TCGA-19-5956-01 12 97311433 97311433 C T NEDD1 Missense_Mutation p.S96F 0.47 tolerated(0.08) probably_damaging(1) TCGA-19-5956-01 12 9833571 9833572 - T CLEC2D Frame_Shift_Ins p.I42Nfs*21 0.33 TCGA-19-5956-01 12 98849596 98849596 C T SLC9A7P1 RNA 0.40 TCGA-19-5956-01 12 98849756 98849756 C T SLC9A7P1 RNA 0.45 TCGA-19-5956-01 12 98927170 98927170 G T TMPO Missense_Mutation p.D379Y 0.40 deleterious_low_confidence(0) possibly_damaging(0.879) TCGA-19-5956-01 12 98991751 98991751 G T SLC25A3 Nonsense_Mutation p.G134* 0.09 TCGA-19-5956-01 12 9907196 9907196 C A CD69 Nonsense_Mutation p.E160* 0.09 TCGA-19-5956-01 12 99080611 99080611 A G APAF1 Missense_Mutation p.D755G 0.47 tolerated(0.19) benign(0.347) TCGA-19-5956-01 12 99129389 99129389 G A ANKS1B Silent p.T1232T 0.31 TCGA-19-5956-01 12 99447050 99447050 G T ANKS1B Missense_Mutation p.S888Y 0.19 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 12 9984911 9984911 G A KLRF1 Splice_Site p.X29_splice 0.47 TCGA-19-5956-01 13 100020062 100020062 C T UBAC2 Missense_Mutation p.R277C 0.54 deleterious(0.01) possibly_damaging(0.838) TCGA-19-5956-01 13 100617952 100617952 G A ZIC5 Silent p.G557G 0.28 TCGA-19-5956-01 13 100925564 100925564 G T PCCA Missense_Mutation p.K343N 0.73 deleterious(0) possibly_damaging(0.612) TCGA-19-5956-01 13 101742088 101742088 A G NALCN Missense_Mutation p.F1139L 0.07 deleterious(0.01) benign(0.32) TCGA-19-5956-01 13 102368065 102368065 G A ITGBL1 3'UTR 0.16 TCGA-19-5956-01 13 103419754 103419754 G A TEX30 Missense_Mutation p.R125W 0.31 deleterious(0.02) possibly_damaging(0.816) TCGA-19-5956-01 13 103514579 103514579 G T BIVM-ERCC5 Missense_Mutation p.E786D 0.11 tolerated_low_confidence(0.11) probably_damaging(0.953) TCGA-19-5956-01 13 103524701 103524701 G A BIVM-ERCC5 Silent p.S1370S 0.32 TCGA-19-5956-01 13 107822975 107822975 C A FAM155A Missense_Mutation p.R416I 0.60 deleterious(0) possibly_damaging(0.549) TCGA-19-5956-01 13 108922360 108922360 C T TNFSF13B Silent p.V39V 0.24 TCGA-19-5956-01 13 109459038 109459038 G A MYO16 Silent p.A229A 0.25 TCGA-19-5956-01 13 109704780 109704780 C A MYO16 Missense_Mutation p.S980Y 0.53 deleterious(0.01) possibly_damaging(0.905) TCGA-19-5956-01 13 110804798 110804798 C T COL4A1 Missense_Mutation p.C1604Y 0.14 benign(0.424) TCGA-19-5956-01 13 110807708 110807708 G T COL4A1 Silent p.A1559A 0.24 TCGA-19-5956-01 13 111134945 111134945 C T COL4A2 Silent p.G947G 0.60 TCGA-19-5956-01 13 111156324 111156324 C A COL4A2 Silent p.G1423G 0.50 TCGA-19-5956-01 13 111164288 111164288 C T COL4A2 Missense_Mutation p.A1630V 0.57 unknown(0) TCGA-19-5956-01 13 111279847 111279847 G A CARKD Missense_Mutation p.V150I 0.30 tolerated(0.71) benign(0.08) TCGA-19-5956-01 13 111290685 111290685 G A CARKD Silent p.T330T 0.25 TCGA-19-5956-01 13 111367830 111367830 C T ING1 Nonsense_Mutation p.R14* 0.16 TCGA-19-5956-01 13 111955389 111955389 G T ARHGEF7 Missense_Mutation p.D624Y 0.24 deleterious(0.01) possibly_damaging(0.75) TCGA-19-5956-01 13 113337618 113337618 G T C13orf35 Missense_Mutation p.G97V 0.56 deleterious_low_confidence(0.03) probably_damaging(0.979) TCGA-19-5956-01 13 113470411 113470411 C T ATP11A Silent p.V152V 0.16 TCGA-19-5956-01 13 113505388 113505388 T G ATP11A Missense_Mutation p.L616R 0.53 deleterious(0.01) probably_damaging(0.926) TCGA-19-5956-01 13 113526074 113526074 C T ATP11A Missense_Mutation p.T1006M 0.19 deleterious(0.01) benign(0.242) TCGA-19-5956-01 13 113633975 113633975 C T MCF2L Intron 0.14 TCGA-19-5956-01 13 113699584 113699584 G T MCF2L Splice_Site p.X93_splice 0.54 TCGA-19-5956-01 13 113814376 113814376 G A PROZ Missense_Mutation p.R62H 0.25 deleterious(0) probably_damaging(1) TCGA-19-5956-01 13 114164647 114164647 C T TMCO3 Missense_Mutation p.T378M 0.30 deleterious(0.03) possibly_damaging(0.901) TCGA-19-5956-01 13 114193729 114193729 G A TMCO3 Missense_Mutation p.V533I 0.21 tolerated(1) benign(0.004) TCGA-19-5956-01 13 114285983 114285983 G A TFDP1 Missense_Mutation p.V78I 0.57 tolerated(0.67) benign(0.008) TCGA-19-5956-01 13 114324053 114324053 G A GRK1 Missense_Mutation p.V251M 0.32 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 13 114773025 114773025 T C RASA3 Missense_Mutation p.I576V 0.20 tolerated(1) benign(0.044) TCGA-19-5956-01 13 115004803 115004803 G A CDC16 Intron 0.31 TCGA-19-5956-01 13 115028490 115028490 G T CDC16 Splice_Site p.X504_splice 0.11 TCGA-19-5956-01 13 19748040 19748040 G A TUBA3C Missense_Mutation p.S439F 0.48 deleterious_low_confidence(0.01) unknown(0) TCGA-19-5956-01 13 19751603 19751603 C A TUBA3C Missense_Mutation p.A174S 0.10 tolerated_low_confidence(0.27) benign(0.182) TCGA-19-5956-01 13 20012252 20012252 C T TPTE2 Missense_Mutation p.E339K 0.41 tolerated(0.17) benign(0.059) TCGA-19-5956-01 13 20038609 20038609 C A TPTE2 Missense_Mutation p.R243I 0.08 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 13 20411637 20411637 C T ZMYM5 3'UTR 0.10 TCGA-19-5956-01 13 20580517 20580517 C T ZMYM2 Missense_Mutation p.R435C 0.64 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 13 20632833 20632833 C A ZMYM2 Missense_Mutation p.S871Y 0.39 deleterious(0.04) possibly_damaging(0.602) TCGA-19-5956-01 13 20796793 20796793 G T GJB6 3'UTR 0.52 TCGA-19-5956-01 13 21417982 21417982 A T XPO4 Missense_Mutation p.F167Y 0.13 tolerated(1) benign(0.097) TCGA-19-5956-01 13 21562221 21562221 G A LATS2 Silent p.G566G 0.24 TCGA-19-5956-01 13 21620171 21620171 G A LATS2 5'UTR 0.30 TCGA-19-5956-01 13 21732131 21732131 G T SKA3 Missense_Mutation p.S350Y 0.07 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 13 21746544 21746544 C T SKA3 Missense_Mutation p.D89N 0.21 deleterious(0.04) benign(0.377) TCGA-19-5956-01 13 21955644 21955644 G T ZDHHC20 Nonsense_Mutation p.S329* 0.30 TCGA-19-5956-01 13 22178094 22178094 A C MICU2 Missense_Mutation p.F65C 0.39 tolerated(0.15) benign(0.008) TCGA-19-5956-01 13 22275367 22275367 C T FGF9 Silent p.F140F 0.29 TCGA-19-5956-01 13 23853608 23853608 C T SGCG Nonsense_Mutation p.R166* 0.16 TCGA-19-5956-01 13 23904737 23904737 C A SACS Missense_Mutation p.Q4426H 0.11 possibly_damaging(0.459) TCGA-19-5956-01 13 23904828 23904828 C A SACS Missense_Mutation p.R4396I 0.07 benign(0.368) TCGA-19-5956-01 13 23906735 23906735 C T SACS Silent p.T3760T 0.38 TCGA-19-5956-01 13 23908762 23908762 C T SACS Missense_Mutation p.D3085N 0.55 probably_damaging(0.992) TCGA-19-5956-01 13 23908825 23908825 C A SACS Nonsense_Mutation p.E3064* 0.25 TCGA-19-5956-01 13 23911134 23911134 A G SACS Missense_Mutation p.I2294T 0.21 benign(0.04) TCGA-19-5956-01 13 25009140 25009140 G A PARP4 Missense_Mutation p.S1380L 0.45 tolerated(0.8) benign(0) TCGA-19-5956-01 13 25029314 25029314 C T PARP4 Missense_Mutation p.D867N 0.47 tolerated(0.14) benign(0.018) TCGA-19-5956-01 13 25157681 25157681 G A RP11-556N21.1 RNA 0.27 TCGA-19-5956-01 13 25161456 25161456 C T RP11-556N21.1 RNA 0.37 TCGA-19-5956-01 13 25262642 25262642 G T ATP12A Missense_Mutation p.K138N 0.06 tolerated(0.14) benign(0.001) TCGA-19-5956-01 13 25281437 25281437 C A ATP12A Missense_Mutation p.L793I 0.46 deleterious(0.03) benign(0.364) TCGA-19-5956-01 13 25376667 25376667 C A RNF17 Missense_Mutation p.P636H 0.20 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 13 25399812 25399812 G T RNF17 Missense_Mutation p.S716I 0.12 tolerated(0.38) possibly_damaging(0.465) TCGA-19-5956-01 13 25428235 25428235 G A RNF17 Missense_Mutation p.S1188N 0.13 deleterious(0.01) benign(0.247) TCGA-19-5956-01 13 25448303 25448303 T G RNF17 Missense_Mutation p.I1500S 0.16 deleterious(0) probably_damaging(0.954) TCGA-19-5956-01 13 25457206 25457206 C T CENPJ 3'UTR 0.38 TCGA-19-5956-01 13 25457259 25457259 T C CENPJ 3'UTR 0.13 TCGA-19-5956-01 13 25466786 25466786 G T CENPJ Missense_Mutation p.L1071I 0.07 tolerated(0.43) benign(0.011) TCGA-19-5956-01 13 25466857 25466857 C A CENPJ Missense_Mutation p.R1047I 0.39 deleterious(0) probably_damaging(0.961) TCGA-19-5956-01 13 25743969 25743969 G A AMER2 Nonsense_Mutation p.R597* 0.20 TCGA-19-5956-01 13 25744464 25744464 C T AMER2 Missense_Mutation p.D432N 0.50 deleterious(0.04) probably_damaging(1) TCGA-19-5956-01 13 25911115 25911115 G A NUPL1 Missense_Mutation p.G493S 0.29 tolerated(0.14) benign(0.17) TCGA-19-5956-01 13 26106422 26106422 G A ATP8A2 Missense_Mutation p.A145T 0.49 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 13 26127946 26127946 A C ATP8A2 Missense_Mutation p.N358T 0.04 tolerated(0.06) possibly_damaging(0.557) TCGA-19-5956-01 13 26413764 26413764 T C ATP8A2 Splice_Site p.X986_splice 0.15 TCGA-19-5956-01 13 26928012 26928012 G T CDK8 Missense_Mutation p.D151Y 0.38 deleterious(0) probably_damaging(1) TCGA-19-5956-01 13 26975440 26975440 C T CDK8 Nonsense_Mutation p.R356* 0.18 TCGA-19-5956-01 13 27216412 27216412 C A WASF3 Missense_Mutation p.P2H 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 13 27254254 27254254 G T WASF3 Intron 0.27 TCGA-19-5956-01 13 27255350 27255350 G A WASF3 Silent p.S292S 0.13 TCGA-19-5956-01 13 27649452 27649452 G A USP12 Nonsense_Mutation p.R270* 0.12 TCGA-19-5956-01 13 27664045 27664045 G A USP12 Missense_Mutation p.R237C 0.39 tolerated(0.39) benign(0.005) TCGA-19-5956-01 13 28011394 28011394 C A MTIF3 Missense_Mutation p.K159N 0.15 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 13 28631589 28631589 A G FLT3 Missense_Mutation p.S127P 0.19 deleterious(0) possibly_damaging(0.616) TCGA-19-5956-01 13 28830570 28830570 A C PAN3 Missense_Mutation p.N381T 0.06 tolerated(0.07) benign(0.017) TCGA-19-5956-01 13 28841270 28841270 G A PAN3 Missense_Mutation p.D538N 0.28 tolerated(0.07) probably_damaging(0.996) TCGA-19-5956-01 13 28877294 28877294 G A FLT1 3'UTR 0.12 TCGA-19-5956-01 13 29236562 29236562 G T POMP Nonsense_Mutation p.G7* 0.28 TCGA-19-5956-01 13 29275659 29275659 G A SLC46A3 Missense_Mutation p.S454F 0.44 deleterious(0.01) benign(0.444) TCGA-19-5956-01 13 29287061 29287061 A - SLC46A3 Frame_Shift_Del p.F272Lfs*3 0.14 TCGA-19-5956-01 13 29287110 29287110 C A SLC46A3 Missense_Mutation p.R256I 0.50 deleterious(0.02) possibly_damaging(0.629) TCGA-19-5956-01 13 29608203 29608203 C T MTUS2 Missense_Mutation p.A806V 0.34 tolerated(0.08) possibly_damaging(0.651) TCGA-19-5956-01 13 30782589 30782589 A C KATNAL1 3'UTR 0.59 TCGA-19-5956-01 13 31232961 31232961 G A USPL1 Missense_Mutation p.R916Q 0.21 tolerated(0.14) benign(0.002) TCGA-19-5956-01 13 32355863 32355863 G A RXFP2 Missense_Mutation p.D281N 0.42 tolerated(0.76) benign(0.005) TCGA-19-5956-01 13 32363260 32363260 G T RXFP2 Missense_Mutation p.D359Y 0.20 tolerated(0.07) benign(0.15) TCGA-19-5956-01 13 32759132 32759132 C T FRY Missense_Mutation p.R1056W 0.19 deleterious(0) probably_damaging(0.929) TCGA-19-5956-01 13 32826051 32826051 C A FRY Missense_Mutation p.L2403M 0.19 deleterious(0.05) probably_damaging(0.999) TCGA-19-5956-01 13 32841430 32841430 G T FRY Missense_Mutation p.Q2690H 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 13 32907436 32907436 A G BRCA2 Silent p.K607K 0.42 TCGA-19-5956-01 13 32911410 32911410 C T BRCA2 Missense_Mutation p.S973L 0.50 tolerated(0.1) benign(0.022) TCGA-19-5956-01 13 32912318 32912318 G T BRCA2 Nonsense_Mutation p.E1276* 0.17 TCGA-19-5956-01 13 32913751 32913751 T G BRCA2 Silent p.S1753S 0.20 TCGA-19-5956-01 13 32914522 32914522 C A BRCA2 Silent p.V2010V 0.21 TCGA-19-5956-01 13 32929125 32929125 G A BRCA2 Missense_Mutation p.G2379R 0.16 tolerated(0.47) benign(0.027) TCGA-19-5956-01 13 32932048 32932048 G A BRCA2 Missense_Mutation p.G2596E 0.20 deleterious(0) probably_damaging(1) TCGA-19-5956-01 13 32945104 32945104 G T BRCA2 Missense_Mutation p.K2833N 0.13 deleterious(0) probably_damaging(0.949) TCGA-19-5956-01 13 32972852 32972852 C T BRCA2 Missense_Mutation p.T3401M 0.15 deleterious(0.05) possibly_damaging(0.681) TCGA-19-5956-01 13 33109992 33109992 C A N4BP2L2 Intron 0.08 TCGA-19-5956-01 13 33111030 33111030 T G N4BP2L2 Intron 0.21 TCGA-19-5956-01 13 33306275 33306275 G A PDS5B Missense_Mutation p.G721R 0.20 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 13 33634830 33634830 G A KL Silent p.L538L 0.40 TCGA-19-5956-01 13 33692323 33692323 G A STARD13 Silent p.N720N 0.07 TCGA-19-5956-01 13 33704015 33704015 G A STARD13 Nonsense_Mutation p.R267* 0.31 TCGA-19-5956-01 13 33760092 33760092 C T STARD13 Intron 0.23 TCGA-19-5956-01 13 34398062 34398063 - A RFC3 Frame_Shift_Ins p.I82Nfs*2 0.47 TCGA-19-5956-01 13 35692570 35692570 A T NBEA Silent p.P734P 0.23 TCGA-19-5956-01 13 35923249 35923249 C A NBEA Missense_Mutation p.L1970M 0.44 tolerated(0.1) benign(0.285) TCGA-19-5956-01 13 36129208 36129208 C T NBEA Silent p.F2297F 0.42 TCGA-19-5956-01 13 36167508 36167508 T G NBEA Missense_Mutation p.F2407C 0.12 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 13 36180701 36180701 C T NBEA Missense_Mutation p.R2479W 0.38 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 13 36743048 36743048 G A SOHLH2 3'UTR 0.18 TCGA-19-5956-01 13 36766002 36766002 C A SOHLH2 Nonsense_Mutation p.E231* 0.45 TCGA-19-5956-01 13 37401904 37401904 G A RFXAP 3'UTR 0.41 TCGA-19-5956-01 13 38225499 38225499 G A TRPC4 Missense_Mutation p.P661L 0.42 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 13 38320181 38320181 C A TRPC4 Nonsense_Mutation p.E264* 0.46 TCGA-19-5956-01 13 38357228 38357228 C A TRPC4 Missense_Mutation p.E81D 0.52 deleterious(0.04) probably_damaging(0.97) TCGA-19-5956-01 13 39264463 39264463 C A FREM2 Silent p.I994I 0.09 TCGA-19-5956-01 13 39264969 39264969 T G FREM2 Missense_Mutation p.F1163C 0.20 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 13 39266571 39266571 G A FREM2 Missense_Mutation p.R1697K 0.23 tolerated(1) benign(0.001) TCGA-19-5956-01 13 39541003 39541003 C T STOML3 Missense_Mutation p.V279I 0.24 tolerated(0.48) benign(0.001) TCGA-19-5956-01 13 39544392 39544392 C A STOML3 Missense_Mutation p.R149I 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 13 39605743 39605743 G A PROSER1 Missense_Mutation p.S46F 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 13 40325108 40325108 G T COG6 Nonsense_Mutation p.E618* 0.18 TCGA-19-5956-01 13 40325202 40325202 C T COG6 Missense_Mutation p.P649L 0.42 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 13 41706324 41706324 C T KBTBD6 Silent p.Q108Q 0.44 TCGA-19-5956-01 13 41767954 41767954 G A KBTBD7 Missense_Mutation p.A147V 0.19 deleterious(0) probably_damaging(0.954) TCGA-19-5956-01 13 41932644 41932644 G T NAA16 Intron 0.18 TCGA-19-5956-01 13 41941619 41941619 C A NAA16 Nonsense_Mutation p.Y528* 0.47 TCGA-19-5956-01 13 42866565 42866565 G T AKAP11 Missense_Mutation p.Q32H 0.22 tolerated(0.39) benign(0.018) TCGA-19-5956-01 13 42876598 42876598 G T AKAP11 Missense_Mutation p.R1239I 0.14 tolerated(0.11) benign(0.034) TCGA-19-5956-01 13 43872652 43872652 C T ENOX1 Missense_Mutation p.A426T 0.46 tolerated(0.34) benign(0.004) TCGA-19-5956-01 13 45563316 45563316 G A NUFIP1 Missense_Mutation p.L86F 0.19 deleterious_low_confidence(0.04) benign(0.201) TCGA-19-5956-01 13 45601990 45601990 A T GPALPP1 Missense_Mutation p.K292I 0.23 tolerated(0.05) possibly_damaging(0.739) TCGA-19-5956-01 13 45980042 45980042 G A SLC25A30 Nonsense_Mutation p.R95* 0.44 TCGA-19-5956-01 13 46541933 46541933 G A ZC3H13 Nonsense_Mutation p.R1343* 0.23 TCGA-19-5956-01 13 46543009 46543009 G A ZC3H13 Nonsense_Mutation p.R1224* 0.24 TCGA-19-5956-01 13 46549838 46549838 C T ZC3H13 Missense_Mutation p.R683Q 0.26 unknown(0) TCGA-19-5956-01 13 46584520 46584520 T C ZC3H13 Missense_Mutation p.T237A 0.39 unknown(0) TCGA-19-5956-01 13 46619615 46619615 C T ZC3H13 Missense_Mutation p.V10M 0.45 unknown(0) TCGA-19-5956-01 13 46653011 46653011 G A CPB2 Missense_Mutation p.T137I 0.12 tolerated(0.07) possibly_damaging(0.61) TCGA-19-5956-01 13 46917581 46917581 C T KIAA0226L Missense_Mutation p.R643Q 0.28 deleterious(0.01) probably_damaging(0.981) TCGA-19-5956-01 13 46933745 46933745 G A KIAA0226L Nonsense_Mutation p.R381* 0.50 TCGA-19-5956-01 13 47470013 47470013 G T HTR2A Missense_Mutation p.S10Y 0.08 deleterious_low_confidence(0.01) possibly_damaging(0.692) TCGA-19-5956-01 13 48517525 48517525 T C SUCLA2 Missense_Mutation p.K458R 0.17 deleterious(0.05) benign(0.424) TCGA-19-5956-01 13 49039143 49039143 C T RB1 Missense_Mutation p.R741C 0.21 tolerated(0.1) benign(0.023) TCGA-19-5956-01 13 49765250 49765250 C T FNDC3A Nonsense_Mutation p.R682* 0.22 TCGA-19-5956-01 13 49841638 49841638 G A CDADC1 Missense_Mutation p.R148Q 0.37 tolerated(0.24) benign(0.34) TCGA-19-5956-01 13 49841932 49841932 C A CDADC1 Nonsense_Mutation p.S246* 0.25 TCGA-19-5956-01 13 49885119 49885119 G A CAB39L Missense_Mutation p.A282V 0.48 deleterious(0) probably_damaging(1) TCGA-19-5956-01 13 50057637 50057637 C A SETDB2 Missense_Mutation p.H486N 0.19 tolerated(0.22) possibly_damaging(0.752) TCGA-19-5956-01 13 50237298 50237298 A G EBPL Missense_Mutation p.V92A 0.10 tolerated(0.76) benign(0.013) TCGA-19-5956-01 13 50594594 50594594 T G KCNRG 3'UTR 0.21 TCGA-19-5956-01 13 51854837 51854837 C A FAM124A Silent p.S398S 0.11 TCGA-19-5956-01 13 51855296 51855296 C T FAM124A Silent p.C551C 0.44 TCGA-19-5956-01 13 51915365 51915365 T C SERPINE3 Silent p.N46N 0.11 TCGA-19-5956-01 13 52035094 52035094 C T RPS4XP16 RNA 0.58 TCGA-19-5956-01 13 52293466 52293466 C A WDFY2 Missense_Mutation p.A156D 0.47 deleterious(0.01) benign(0.248) TCGA-19-5956-01 13 52548767 52548767 G A ATP7B Missense_Mutation p.L197F 0.18 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 13 52598748 52598748 G T ALG11 Missense_Mutation p.E294D 0.15 tolerated(0.43) benign(0.005) TCGA-19-5956-01 13 52603069 52603069 A C UTP14C Missense_Mutation p.Q43H 0.10 deleterious(0.04) benign(0.236) TCGA-19-5956-01 13 52603699 52603699 A G UTP14C Silent p.K253K 0.35 TCGA-19-5956-01 13 52604050 52604050 G T UTP14C Silent p.P370P 0.44 TCGA-19-5956-01 13 52604944 52604944 C T UTP14C Silent p.I668I 0.47 TCGA-19-5956-01 13 52639746 52639746 C T NEK5 Splice_Site p.X642_splice 0.56 TCGA-19-5956-01 13 52952712 52952712 C T THSD1 Missense_Mutation p.E465K 0.15 deleterious(0.03) benign(0.081) TCGA-19-5956-01 13 53035474 53035474 G T CKAP2 Missense_Mutation p.K172N 0.41 deleterious(0) possibly_damaging(0.55) TCGA-19-5956-01 13 53035894 53035894 G T CKAP2 Missense_Mutation p.K312N 0.11 tolerated(0.08) benign(0.117) TCGA-19-5956-01 13 53216649 53216649 A C HNRNPA1L2 Missense_Mutation p.K8Q 0.46 deleterious(0.02) benign(0.275) TCGA-19-5956-01 13 53217292 53217292 T C HNRNPA1L2 Missense_Mutation p.F222S 0.70 tolerated(0.07) unknown(0) TCGA-19-5956-01 13 53421033 53421033 G A PCDH8 Silent p.G513G 0.23 TCGA-19-5956-01 13 53616106 53616106 G A OLFM4 Missense_Mutation p.R140Q 0.32 deleterious(0.02) benign(0.426) TCGA-19-5956-01 13 58206935 58206935 C A PCDH17 Nonsense_Mutation p.Y85* 0.14 TCGA-19-5956-01 13 58298964 58298964 C T PCDH17 Nonsense_Mutation p.R1006* 0.27 TCGA-19-5956-01 13 60590112 60590112 C T DIAPH3 Missense_Mutation p.E236K 0.55 deleterious(0.05) benign(0.217) TCGA-19-5956-01 13 61986138 61986138 G T PCDH20 Silent p.V698V 0.13 TCGA-19-5956-01 13 61987836 61987836 G A PCDH20 Silent p.T132T 0.21 TCGA-19-5956-01 13 67799535 67799535 A G PCDH9 Splice_Site p.X1012_splice 0.21 TCGA-19-5956-01 13 70681607 70681607 A C KLHL1 Silent p.S75S 0.07 TCGA-19-5956-01 13 72063150 72063150 C A DACH1 Missense_Mutation p.E569D 0.45 probably_damaging(0.963) TCGA-19-5956-01 13 72204689 72204689 G A DACH1 Silent p.V377V 0.10 TCGA-19-5956-01 13 73636848 73636848 C T KLF5 Missense_Mutation p.R371C 0.46 deleterious(0) probably_damaging(0.952) TCGA-19-5956-01 13 74387340 74387340 C A KLF12 Missense_Mutation p.S252I 0.52 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 13 75915336 75915336 T C TBC1D4 Silent p.E512E 0.46 TCGA-19-5956-01 13 76101975 76101975 C T COMMD6 Missense_Mutation p.A74T 0.18 tolerated_low_confidence(0.88) unknown(0) TCGA-19-5956-01 13 76111698 76111698 A G COMMD6 Intron 0.89 TCGA-19-5956-01 13 76141389 76141389 C A UCHL3 Missense_Mutation p.L123M 0.18 deleterious(0) probably_damaging(0.938) TCGA-19-5956-01 13 77570126 77570126 C T CLN5 Silent p.N192N 0.48 TCGA-19-5956-01 13 77592800 77592800 T C FBXL3 Missense_Mutation p.N136D 0.15 tolerated(0.06) benign(0.026) TCGA-19-5956-01 13 77592811 77592811 G A FBXL3 Missense_Mutation p.S132L 0.49 deleterious(0) possibly_damaging(0.462) TCGA-19-5956-01 13 77754425 77754425 C T MYCBP2 Missense_Mutation p.S1619N 0.42 benign(0.11) TCGA-19-5956-01 13 77779704 77779704 C T MYCBP2 Missense_Mutation p.D1169N 0.18 benign(0.22) TCGA-19-5956-01 13 78335209 78335209 A G SLAIN1 Missense_Mutation p.N390S 0.07 tolerated(0.9) possibly_damaging(0.801) TCGA-19-5956-01 13 92346060 92346060 G A GPC5 Silent p.V315V 0.26 TCGA-19-5956-01 13 95112383 95112383 C T DCT Missense_Mutation p.A381T 0.55 deleterious(0.02) benign(0.168) TCGA-19-5956-01 13 96086159 96086159 G A CLDN10 Silent p.T24T 0.23 TCGA-19-5956-01 13 96546859 96546859 G A UGGT2 Missense_Mutation p.R938C 0.11 tolerated(0.05) possibly_damaging(0.67) TCGA-19-5956-01 13 96547505 96547505 T G UGGT2 Missense_Mutation p.E896D 0.11 deleterious(0.05) probably_damaging(0.996) TCGA-19-5956-01 13 97639260 97639260 C T OXGR1 Missense_Mutation p.V252I 0.41 tolerated(0.32) benign(0.016) TCGA-19-5956-01 13 98649835 98649835 G A IPO5 Missense_Mutation p.A340T 0.16 tolerated(0.27) benign(0.341) TCGA-19-5956-01 13 98828296 98828296 G T RNF113B 3'UTR 0.23 TCGA-19-5956-01 13 99459988 99459988 G T DOCK9 Missense_Mutation p.S1828Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 13 99947546 99947546 G A GPR183 Missense_Mutation p.S285L 0.32 tolerated(0.09) benign(0.007) TCGA-19-5956-01 14 100118610 100118610 C T HHIPL1 Missense_Mutation p.T102M 0.28 tolerated(0.06) probably_damaging(0.997) TCGA-19-5956-01 14 100615732 100615732 C T DEGS2 Missense_Mutation p.R133H 0.33 deleterious(0) probably_damaging(1) TCGA-19-5956-01 14 100793638 100793638 C T SLC25A47 Silent p.Y86Y 0.29 TCGA-19-5956-01 14 100795060 100795060 C T SLC25A47 Intron 0.32 TCGA-19-5956-01 14 101450237 101450237 C T SNORD114-23 RNA 0.27 TCGA-19-5956-01 14 101498377 101498377 C T MIR543 RNA 0.25 TCGA-19-5956-01 14 101500140 101500140 G A MIR495 RNA 0.35 TCGA-19-5956-01 14 102027953 102027953 C T DIO3 Silent p.A40A 0.31 TCGA-19-5956-01 14 102028835 102028835 C T DIO3 3'UTR 0.61 TCGA-19-5956-01 14 102375946 102375946 A G PPP2R5C Missense_Mutation p.Y422C 0.06 deleterious(0.02) possibly_damaging(0.809) TCGA-19-5956-01 14 102378805 102378805 C T PPP2R5C Missense_Mutation p.P472S 0.55 deleterious(0.05) benign(0.396) TCGA-19-5956-01 14 102449358 102449358 C A DYNC1H1 Missense_Mutation p.L322I 0.27 probably_damaging(0.951) TCGA-19-5956-01 14 102476619 102476619 C T DYNC1H1 Silent p.C2076C 0.23 TCGA-19-5956-01 14 102515904 102515904 C T DYNC1H1 Silent p.G4500G 0.28 TCGA-19-5956-01 14 102675662 102675662 A C WDR20 Missense_Mutation p.E416D 0.12 tolerated(0.15) benign(0.411) TCGA-19-5956-01 14 102918885 102918885 C T TECPR2 Silent p.L1187L 0.17 TCGA-19-5956-01 14 103173723 103173723 C A RCOR1 Silent p.I178I 0.57 TCGA-19-5956-01 14 103188726 103188726 C A RCOR1 Silent p.S464S 0.28 TCGA-19-5956-01 14 103371855 103371855 G T TRAF3 Nonsense_Mutation p.E481* 0.33 TCGA-19-5956-01 14 103438278 103438278 C A CDC42BPB Missense_Mutation p.R621I 0.25 deleterious(0) benign(0.128) TCGA-19-5956-01 14 104481085 104481085 G T TDRD9 Missense_Mutation p.L710F 0.08 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 14 104488599 104488599 C T TDRD9 Silent p.S846S 0.50 TCGA-19-5956-01 14 105349143 105349143 C T CEP170B Missense_Mutation p.A184V 0.12 tolerated(0.16) benign(0.038) TCGA-19-5956-01 14 105407698 105407698 G A AHNAK2 Missense_Mutation p.S4697L 0.18 benign(0.018) TCGA-19-5956-01 14 105414982 105414982 T G AHNAK2 Missense_Mutation p.K2269T 0.28 possibly_damaging(0.859) TCGA-19-5956-01 14 105416651 105416651 C T AHNAK2 Missense_Mutation p.A1713T 0.52 possibly_damaging(0.837) TCGA-19-5956-01 14 105420977 105420977 G A AHNAK2 Missense_Mutation p.R271W 0.35 possibly_damaging(0.854) TCGA-19-5956-01 14 105615371 105615371 G A JAG2 Silent p.S603S 0.75 TCGA-19-5956-01 14 105833640 105833640 G A PACS2 Missense_Mutation p.A172T 0.28 tolerated(0.11) benign(0.04) TCGA-19-5956-01 14 106321299 106321299 G A IGHM Silent p.S230S 0.54 TCGA-19-5956-01 14 107012947 107012947 G T IGHV3-49 Nonsense_Mutation p.Y116* 0.24 TCGA-19-5956-01 14 107078593 107078593 G T IGHV1-58 Missense_Mutation p.S44Y 0.13 probably_damaging(0.987) TCGA-19-5956-01 14 107113979 107113979 C T IGHV3-64 Missense_Mutation p.R39K 0.20 tolerated_low_confidence(0.23) benign(0.214) TCGA-19-5956-01 14 107170201 107170201 C T IGHV1-69 Silent p.G27G 0.42 TCGA-19-5956-01 14 107179002 107179002 G A IGHV2-70 Missense_Mutation p.R59C 0.29 deleterious(0.05) benign(0.214) TCGA-19-5956-01 14 20295744 20295744 T G OR4N2 Missense_Mutation p.I46S 0.30 deleterious(0) benign(0.367) TCGA-19-5956-01 14 20345170 20345170 C A OR4K2 Missense_Mutation p.F248L 0.18 tolerated(0.21) benign(0.004) TCGA-19-5956-01 14 20389655 20389655 C T OR4K5 Missense_Mutation p.A297V 0.22 deleterious(0.02) benign(0.023) TCGA-19-5956-01 14 20483064 20483064 C A OR4K14 Nonsense_Mutation p.G97* 0.27 TCGA-19-5956-01 14 20528953 20528953 C A OR4L1 Missense_Mutation p.F250L 0.34 deleterious(0) benign(0.17) TCGA-19-5956-01 14 20529014 20529014 C A OR4L1 Missense_Mutation p.L271I 0.32 deleterious(0.04) possibly_damaging(0.483) TCGA-19-5956-01 14 20665911 20665911 C A OR11G2 Missense_Mutation p.F139L 0.24 tolerated(0.11) benign(0.228) TCGA-19-5956-01 14 20666098 20666098 T A OR11G2 Missense_Mutation p.S202T 0.15 tolerated(0.12) possibly_damaging(0.629) TCGA-19-5956-01 14 20666202 20666202 C A OR11G2 Silent p.V236V 0.13 TCGA-19-5956-01 14 20841477 20841477 C T TEP1 Missense_Mutation p.A2256T 0.29 tolerated(0.45) benign(0.062) TCGA-19-5956-01 14 20850180 20850180 C T TEP1 Missense_Mutation p.R1439Q 0.65 tolerated(0.55) benign(0.007) TCGA-19-5956-01 14 20851998 20851998 C T TEP1 Missense_Mutation p.R1205H 0.47 deleterious(0.02) probably_damaging(0.984) TCGA-19-5956-01 14 21025135 21025135 C A RNASE9 Missense_Mutation p.D37Y 0.37 tolerated(0.11) probably_damaging(0.996) TCGA-19-5956-01 14 21052549 21052549 C A RNASE11 Nonsense_Mutation p.E29* 0.29 TCGA-19-5956-01 14 21058470 21058470 C T RNASE12 Missense_Mutation p.R138K 0.29 tolerated(0.49) benign(0.007) TCGA-19-5956-01 14 21216143 21216143 A C EDDM3A Missense_Mutation p.N135T 0.42 deleterious(0.04) benign(0.007) TCGA-19-5956-01 14 21238537 21238537 C T EDDM3B Silent p.I76I 0.47 TCGA-19-5956-01 14 21424114 21424114 C T RNASE2 Missense_Mutation p.R62W 0.23 tolerated(0.13) benign(0.081) TCGA-19-5956-01 14 21488980 21488980 C T NDRG2 Missense_Mutation p.G144D 0.21 deleterious(0) probably_damaging(1) TCGA-19-5956-01 14 21502251 21502251 G T RNASE13 Nonsense_Mutation p.S66* 0.36 TCGA-19-5956-01 14 21511239 21511239 C T RNASE7 Missense_Mutation p.P30S 0.59 tolerated(0.05) benign(0.155) TCGA-19-5956-01 14 21511525 21511525 G A RNASE7 Missense_Mutation p.R125Q 0.23 tolerated(0.82) benign(0.009) TCGA-19-5956-01 14 21542413 21542413 G A ARHGEF40 Missense_Mutation p.R175Q 0.31 deleterious(0) probably_damaging(0.945) TCGA-19-5956-01 14 21623985 21623985 C T OR5AU1 Missense_Mutation p.G67D 0.66 deleterious(0) benign(0.285) TCGA-19-5956-01 14 21826539 21826539 G T SUPT16H Missense_Mutation p.F783L 0.18 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 14 21836540 21836540 A C SUPT16H Silent p.S281S 0.35 TCGA-19-5956-01 14 21969222 21969222 G T METTL3 Missense_Mutation p.L317I 0.12 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 14 21992223 21992223 G A SALL2 Missense_Mutation p.R547C 0.28 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 14 22090577 22090577 A C TRAV1-1 Silent p.T61T 0.29 TCGA-19-5956-01 14 22102338 22102338 G A OR10G2 Missense_Mutation p.L221F 0.97 tolerated(0.07) benign(0.443) TCGA-19-5956-01 14 22102911 22102911 G A OR10G2 Missense_Mutation p.L30F 0.31 tolerated(0.64) benign(0.003) TCGA-19-5956-01 14 22133867 22133867 G T OR4E2 Missense_Mutation p.D191Y 0.30 deleterious(0) possibly_damaging(0.708) TCGA-19-5956-01 14 22508914 22508914 G T TRAV20 Missense_Mutation p.E2D 0.06 tolerated(0.83) benign(0.097) TCGA-19-5956-01 14 22772399 22772399 G A TRAV39 Missense_Mutation p.V98M 0.12 deleterious(0.01) benign(0.046) TCGA-19-5956-01 14 23070604 23070604 C T ABHD4 Missense_Mutation p.T19M 0.15 deleterious(0.01) benign(0.205) TCGA-19-5956-01 14 23072576 23072576 C T ABHD4 Missense_Mutation p.R132W 0.69 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 14 23078744 23078744 C T ABHD4 Silent p.S289S 0.15 TCGA-19-5956-01 14 23237265 23237265 G A OXA1L Silent p.E168E 0.18 TCGA-19-5956-01 14 23237274 23237274 C T OXA1L Silent p.F171F 0.26 TCGA-19-5956-01 14 23248063 23248063 A C SLC7A7 Missense_Mutation p.F237V 0.10 deleterious(0) probably_damaging(0.948) TCGA-19-5956-01 14 23313648 23313648 C T MMP14 Silent p.F360F 0.53 TCGA-19-5956-01 14 23390185 23390185 C T PRMT5 Silent p.E614E 0.55 TCGA-19-5956-01 14 23457194 23457194 C T C14orf93 Missense_Mutation p.R372K 0.21 deleterious_low_confidence(0.01) benign(0.038) TCGA-19-5956-01 14 23512137 23512137 C T PSMB11 Missense_Mutation p.H235Y 0.19 tolerated(1) benign(0) TCGA-19-5956-01 14 23792226 23792226 C T PABPN1 Missense_Mutation p.S162F 0.06 deleterious(0) possibly_damaging(0.887) TCGA-19-5956-01 14 23855198 23855198 C T MYH6 Missense_Mutation p.R1701Q 0.30 deleterious(0) possibly_damaging(0.905) TCGA-19-5956-01 14 23857377 23857377 C A MYH6 Missense_Mutation p.R1449I 0.30 deleterious(0) probably_damaging(1) TCGA-19-5956-01 14 23872010 23872010 C T MYH6 Splice_Site p.X300_splice 0.44 TCGA-19-5956-01 14 23886832 23886832 G T MYH7 Nonsense_Mutation p.C1411* 0.14 TCGA-19-5956-01 14 24035018 24035018 A C AP1G2 Intron 0.31 TCGA-19-5956-01 14 24530711 24530711 C A LRRC16B Silent p.I770I 0.19 TCGA-19-5956-01 14 24572774 24572774 C T PCK2 Silent p.F508F 0.34 TCGA-19-5956-01 14 24573082 24573082 G A PCK2 Missense_Mutation p.R611Q 0.23 tolerated(0.18) possibly_damaging(0.834) TCGA-19-5956-01 14 24587609 24587609 G A DCAF11 Missense_Mutation p.R197Q 0.63 deleterious(0.03) probably_damaging(0.988) TCGA-19-5956-01 14 24588826 24588826 G A DCAF11 Splice_Site p.X302_splice 0.07 TCGA-19-5956-01 14 24634048 24634048 G A IRF9 Missense_Mutation p.R292H 0.15 deleterious(0) probably_damaging(0.94) TCGA-19-5956-01 14 24647337 24647337 G A REC8 Missense_Mutation p.R301H 0.25 deleterious(0.01) probably_damaging(0.991) TCGA-19-5956-01 14 24657627 24657627 G A IPO4 Silent p.I53I 0.53 TCGA-19-5956-01 14 24676535 24676535 G T TSSK4 Missense_Mutation p.E218D 0.25 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 14 24707848 24707848 C T GMPR2 Missense_Mutation p.T322I 0.62 tolerated(0.1) possibly_damaging(0.836) TCGA-19-5956-01 14 24723920 24723920 G T TGM1 Missense_Mutation p.L680M 0.32 deleterious(0.02) probably_damaging(0.958) TCGA-19-5956-01 14 24736967 24736967 G A RABGGTA Missense_Mutation p.R418W 0.56 deleterious(0) probably_damaging(1) TCGA-19-5956-01 14 24738853 24738853 G A RABGGTA Missense_Mutation p.P159S 0.29 tolerated(0.69) benign(0.003) TCGA-19-5956-01 14 24760368 24760368 C T DHRS1 Missense_Mutation p.R261H 0.15 tolerated(0.14) benign(0.009) TCGA-19-5956-01 14 24765737 24765737 C A DHRS1 Missense_Mutation p.D118Y 0.31 deleterious(0) probably_damaging(0.942) TCGA-19-5956-01 14 24771251 24771251 G A NOP9 Missense_Mutation p.A297T 0.31 tolerated(0.14) benign(0.031) TCGA-19-5956-01 14 24809106 24809106 C A RIPK3 5'UTR 0.62 TCGA-19-5956-01 14 24838770 24838770 G A NFATC4 Missense_Mutation p.A119T 0.74 tolerated_low_confidence(0.38) possibly_damaging(0.736) TCGA-19-5956-01 14 24842993 24842993 G A NFATC4 Missense_Mutation p.R614Q 0.66 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 14 24877992 24877992 A C NYNRIN Missense_Mutation p.K331T 0.42 deleterious_low_confidence(0) benign(0.195) TCGA-19-5956-01 14 25076491 25076491 G A GZMH Missense_Mutation p.T154I 0.34 tolerated(0.2) benign(0.017) TCGA-19-5956-01 14 29237291 29237291 C T FOXG1 Missense_Mutation p.T269I 0.12 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 14 30107748 30107748 C T PRKD1 Missense_Mutation p.R311H 0.35 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 14 31058688 31058688 C T G2E3 Silent p.L79L 0.61 TCGA-19-5956-01 14 31204901 31204901 C A SCFD1 3'UTR 0.37 TCGA-19-5956-01 14 31364705 31364705 T C STRN3 Missense_Mutation p.D769G 0.40 deleterious(0.01) benign(0.341) TCGA-19-5956-01 14 31416346 31416346 C A STRN3 Missense_Mutation p.Q222H 0.56 tolerated(0.17) benign(0.002) TCGA-19-5956-01 14 31583501 31583502 - T HECTD1 Frame_Shift_Ins p.N1888Kfs*19 0.36 TCGA-19-5956-01 14 31592131 31592131 C T HECTD1 Missense_Mutation p.E1702K 0.25 tolerated(0.28) possibly_damaging(0.651) TCGA-19-5956-01 14 31619244 31619244 A G HECTD1 Missense_Mutation p.Y706H 0.26 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 14 31762409 31762409 C T RP11-596D21.1 Intron 0.31 TCGA-19-5956-01 14 31774161 31774161 G A RP11-596D21.1 3'Flank 0.29 TCGA-19-5956-01 14 31776073 31776073 C A AL136418.1 5'Flank 0.26 TCGA-19-5956-01 14 31856336 31856336 C A HEATR5A Missense_Mutation p.K100N 0.24 tolerated(0.19) probably_damaging(0.948) TCGA-19-5956-01 14 32031402 32031402 C T NUBPL Silent p.V79V 0.31 TCGA-19-5956-01 14 32560539 32560539 C A ARHGAP5 Missense_Mutation p.L222I 0.30 tolerated(0.28) possibly_damaging(0.686) TCGA-19-5956-01 14 32624147 32624147 T G ARHGAP5 Missense_Mutation p.I1501S 0.37 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 14 33015036 33015036 G T AKAP6 Nonsense_Mutation p.G393* 0.29 TCGA-19-5956-01 14 33015396 33015396 C T AKAP6 Missense_Mutation p.R513W 0.09 deleterious(0) benign(0.005) TCGA-19-5956-01 14 33201891 33201891 A G AKAP6 Intron 0.19 TCGA-19-5956-01 14 35050779 35050779 G A SNX6 Silent p.F286F 0.69 TCGA-19-5956-01 14 35182662 35182662 G T CFL2 Missense_Mutation p.L37I 0.36 tolerated(0.22) benign(0.037) TCGA-19-5956-01 14 35280178 35280178 A C BAZ1A Missense_Mutation p.L201V 0.33 tolerated(0.54) benign(0.364) TCGA-19-5956-01 14 35498360 35498360 G T SRP54 3'UTR 0.55 TCGA-19-5956-01 14 35554751 35554751 G A PPP2R3C 3'UTR 0.27 TCGA-19-5956-01 14 36192245 36192245 G A RALGAPA1 Missense_Mutation p.H698Y 0.56 deleterious(0.01) possibly_damaging(0.899) TCGA-19-5956-01 14 36211670 36211670 C T RALGAPA1 Silent p.E451E 0.29 TCGA-19-5956-01 14 36783745 36783745 A T MBIP Missense_Mutation p.F182I 0.16 deleterious(0) probably_damaging(0.92) TCGA-19-5956-01 14 36840769 36840769 G A DPPA3P2 RNA 0.43 TCGA-19-5956-01 14 36840932 36840932 G A DPPA3P2 RNA 0.29 TCGA-19-5956-01 14 37194877 37194877 G A SLC25A21 Silent p.F112F 0.07 TCGA-19-5956-01 14 38679378 38679378 C T SSTR1 Missense_Mutation p.R262C 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-19-5956-01 14 39536413 39536413 C A SEC23A Missense_Mutation p.Q397H 0.10 tolerated(0.54) benign(0.002) TCGA-19-5956-01 14 39717101 39717101 G T MIA2 Missense_Mutation p.K441N 0.15 tolerated(0.13) benign(0.081) TCGA-19-5956-01 14 39783973 39783973 G T CTAGE5 Missense_Mutation p.L447F 0.21 tolerated(0.08) benign(0.162) TCGA-19-5956-01 14 42356416 42356416 G A LRFN5 Silent p.K196K 0.14 TCGA-19-5956-01 14 44974544 44974544 C T FSCB Silent p.E549E 0.26 TCGA-19-5956-01 14 44975258 44975258 C A FSCB Missense_Mutation p.E311D 0.49 deleterious(0.05) probably_damaging(0.971) TCGA-19-5956-01 14 44976149 44976149 C A FSCB Missense_Mutation p.K14N 0.11 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 14 45475368 45475369 - A FAM179B Frame_Shift_Ins p.K937Efs*4 0.22 TCGA-19-5956-01 14 45496507 45496507 T C FAM179B Missense_Mutation p.F1112L 0.35 deleterious(0.04) benign(0.413) TCGA-19-5956-01 14 45523645 45523645 G T FAM179B Missense_Mutation p.E1431D 0.10 tolerated(0.18) benign(0.007) TCGA-19-5956-01 14 45535797 45535797 C T FAM179B Missense_Mutation p.R1473C 0.13 deleterious(0.02) benign(0.008) TCGA-19-5956-01 14 50074496 50074496 C A LRR1 Missense_Mutation p.H221N 0.32 tolerated(0.58) benign(0) TCGA-19-5956-01 14 50089173 50089173 A G MGAT2 Missense_Mutation p.E396G 0.07 deleterious(0.01) possibly_damaging(0.689) TCGA-19-5956-01 14 50089191 50089191 A G MGAT2 Missense_Mutation p.N402S 0.48 tolerated(0.68) benign(0.206) TCGA-19-5956-01 14 50089207 50089207 T A MGAT2 Missense_Mutation p.F407L 0.40 deleterious(0.01) probably_damaging(0.992) TCGA-19-5956-01 14 50100118 50100118 C T DNAAF2 Missense_Mutation p.E584K 0.54 tolerated(0.06) probably_damaging(0.929) TCGA-19-5956-01 14 50100124 50100124 T C DNAAF2 Missense_Mutation p.T582A 0.37 tolerated(0.05) benign(0.02) TCGA-19-5956-01 14 50120927 50120927 C T POLE2 Missense_Mutation p.R360H 0.35 tolerated(0.05) benign(0.107) TCGA-19-5956-01 14 50176484 50176484 T A KLHDC1 Silent p.A75A 0.61 TCGA-19-5956-01 14 50235280 50235280 C T KLHDC2 Missense_Mutation p.R32C 0.31 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 14 50576351 50576351 A G VCPKMT 3'UTR 0.15 TCGA-19-5956-01 14 50585300 50585300 G A SOS2 Missense_Mutation p.T1254M 0.23 deleterious_low_confidence(0.03) benign(0.306) TCGA-19-5956-01 14 50626338 50626338 C T SOS2 Missense_Mutation p.V555I 0.25 tolerated(1) benign(0.001) TCGA-19-5956-01 14 50667802 50667802 C T SOS2 Missense_Mutation p.E72K 0.08 deleterious(0.01) benign(0.308) TCGA-19-5956-01 14 50845071 50845071 T G CDKL1 Intron 0.19 TCGA-19-5956-01 14 51238135 51238135 C T NIN Missense_Mutation p.A345T 0.21 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 14 51381530 51381530 G A PYGL Silent p.F469F 0.27 TCGA-19-5956-01 14 51475941 51475941 G A TRIM9 Missense_Mutation p.A388V 0.25 deleterious(0.01) benign(0.186) TCGA-19-5956-01 14 52194813 52194813 C A FRMD6 3'UTR 0.75 TCGA-19-5956-01 14 52458108 52458108 A G C14orf166 Silent p.R45R 0.14 TCGA-19-5956-01 14 52468522 52468522 C T C14orf166 Missense_Mutation p.R157W 0.24 tolerated(0.11) possibly_damaging(0.713) TCGA-19-5956-01 14 52899117 52899117 G A TXNDC16 Silent p.L795L 0.54 TCGA-19-5956-01 14 52923829 52923829 G A TXNDC16 Missense_Mutation p.S561F 0.20 tolerated(0.8) benign(0.013) TCGA-19-5956-01 14 55423764 55423764 C T WDHD1 Silent p.P968P 0.56 TCGA-19-5956-01 14 55510099 55510099 T G SOCS4 Missense_Mutation p.S114A 0.64 tolerated(0.77) benign(0.004) TCGA-19-5956-01 14 55618447 55618447 G T DLGAP5 Silent p.I778I 0.26 TCGA-19-5956-01 14 55646394 55646394 G A DLGAP5 Missense_Mutation p.P243S 0.53 tolerated(0.11) benign(0.027) TCGA-19-5956-01 14 55817747 55817747 C A FBXO34 Missense_Mutation p.F213L 0.25 tolerated(0.17) benign(0.033) TCGA-19-5956-01 14 55903362 55903362 G A TBPL2 Silent p.S175S 0.27 TCGA-19-5956-01 14 56078949 56078949 G T KTN1 Missense_Mutation p.K61N 0.25 deleterious(0) probably_damaging(1) TCGA-19-5956-01 14 56096741 56096741 T A KTN1 Missense_Mutation p.L383I 0.32 deleterious(0.01) probably_damaging(0.973) TCGA-19-5956-01 14 56128210 56128210 C A KTN1 Intron 0.38 TCGA-19-5956-01 14 56137474 56137475 - A KTN1 Frame_Shift_Ins p.A1102Gfs*15 0.21 TCGA-19-5956-01 14 56142590 56142590 G T KTN1 Missense_Mutation p.R1270I 0.39 deleterious(0.01) benign(0.104) TCGA-19-5956-01 14 56757071 56757071 G A PELI2 Missense_Mutation p.G198D 0.07 tolerated(0.21) probably_damaging(0.938) TCGA-19-5956-01 14 57114106 57114106 G A TMEM260 Missense_Mutation p.R672H 0.67 tolerated(0.15) benign(0) TCGA-19-5956-01 14 58600060 58600060 C A C14orf37 Splice_Site p.X457_splice 0.26 TCGA-19-5956-01 14 59113818 59113818 G A DACT1 Missense_Mutation p.R826Q 0.64 deleterious(0) probably_damaging(0.921) TCGA-19-5956-01 14 59730346 59730346 G A DAAM1 Missense_Mutation p.E51K 0.29 deleterious(0.01) unknown(0) TCGA-19-5956-01 14 59793358 59793358 C T DAAM1 Silent p.V435V 0.35 TCGA-19-5956-01 14 60903720 60903720 G T C14orf39 Missense_Mutation p.S536Y 0.13 deleterious(0.03) probably_damaging(0.919) TCGA-19-5956-01 14 60951623 60951623 C A C14orf39 Nonsense_Mutation p.E28* 0.29 TCGA-19-5956-01 14 60976141 60976141 T G SIX6 Missense_Mutation p.F9V 0.13 deleterious(0) benign(0.141) TCGA-19-5956-01 14 61112979 61112979 C T SIX1 3'UTR 0.65 TCGA-19-5956-01 14 61482638 61482638 A C SLC38A6 Missense_Mutation p.E109D 0.27 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 14 62462909 62462909 G T SYT16 Missense_Mutation p.D58Y 0.35 deleterious_low_confidence(0) possibly_damaging(0.786) TCGA-19-5956-01 14 62463262 62463262 T C SYT16 Splice_Site p.X175_splice 0.27 TCGA-19-5956-01 14 62536324 62536324 A C SYT16 Missense_Mutation p.N176T 0.37 deleterious(0.02) benign(0.059) TCGA-19-5956-01 14 63246448 63246448 G A KCNH5 Missense_Mutation p.R673W 0.28 deleterious(0) probably_damaging(0.913) TCGA-19-5956-01 14 63856359 63856359 C T PPP2R5E Missense_Mutation p.A349T 0.20 deleterious(0.01) benign(0.167) TCGA-19-5956-01 14 64065956 64065956 C A WDR89 Missense_Mutation p.M235I 0.31 tolerated(0.23) benign(0.008) TCGA-19-5956-01 14 64554422 64554422 C A SYNE2 Missense_Mutation p.L3840I 0.06 benign(0.126) TCGA-19-5956-01 14 64557652 64557652 G A SYNE2 Silent p.L3954L 0.18 TCGA-19-5956-01 14 64644129 64644129 T G SYNE2 Silent p.V5828V 0.14 TCGA-19-5956-01 14 64682913 64682913 G A SYNE2 Intron 0.27 TCGA-19-5956-01 14 64724049 64724049 C T ESR2 Missense_Mutation p.R329Q 0.08 tolerated(0.47) benign(0.176) TCGA-19-5956-01 14 64746725 64746725 T G ESR2 Missense_Mutation p.K170T 0.29 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 14 64954567 64954567 A C ZBTB25 Missense_Mutation p.L128V 0.23 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 14 64989897 64989897 C A ZBTB1 Missense_Mutation p.Q559K 0.09 deleterious(0.04) probably_damaging(0.93) TCGA-19-5956-01 14 65008840 65008840 A G HSPA2 Missense_Mutation p.T425A 0.33 tolerated_low_confidence(0.06) benign(0.18) TCGA-19-5956-01 14 65207883 65207883 G T PLEKHG3 Missense_Mutation p.G494C 0.22 deleterious(0.03) possibly_damaging(0.769) TCGA-19-5956-01 14 65234528 65234528 C T SPTB Nonsense_Mutation p.W2024* 0.14 TCGA-19-5956-01 14 66200032 66200032 G A FUT8 Missense_Mutation p.R448H 0.06 tolerated(0.19) possibly_damaging(0.605) TCGA-19-5956-01 14 68066770 68066770 C T PIGH Missense_Mutation p.A51T 0.27 tolerated(0.24) benign(0.017) TCGA-19-5956-01 14 68264976 68264976 A C ZFYVE26 Nonsense_Mutation p.L668* 0.28 TCGA-19-5956-01 14 68282578 68282578 A C ZFYVE26 Missense_Mutation p.C35G 0.21 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 14 69341621 69341621 G A ACTN1 Silent p.D900D 0.24 TCGA-19-5956-01 14 69814713 69814713 C T GALNT16 Silent p.G511G 0.34 TCGA-19-5956-01 14 69866150 69866150 G A SLC39A9 Missense_Mutation p.G22R 0.32 deleterious(0) probably_damaging(1) TCGA-19-5956-01 14 70459181 70459181 G A SMOC1 Missense_Mutation p.D192N 0.19 deleterious(0.04) benign(0.152) TCGA-19-5956-01 14 70839557 70839557 G T SYNJ2BP 3'UTR 0.30 TCGA-19-5956-01 14 70925048 70925048 G A ADAM21 Missense_Mutation p.D278N 0.35 tolerated(0.28) benign(0.021) TCGA-19-5956-01 14 70989618 70989618 G T ADAM20 Silent p.I669I 0.29 TCGA-19-5956-01 14 71267725 71267725 C T MAP3K9 Missense_Mutation p.R160H 0.62 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 14 71443974 71443974 G T PCNX Missense_Mutation p.R307I 0.19 deleterious_low_confidence(0.03) possibly_damaging(0.866) TCGA-19-5956-01 14 71542983 71542983 T C PCNX Silent p.R1728R 0.33 TCGA-19-5956-01 14 71576766 71576766 G A PCNX 3'UTR 0.24 TCGA-19-5956-01 14 72056042 72056042 G A SIPA1L1 Missense_Mutation p.V485I 0.24 tolerated(0.55) possibly_damaging(0.457) TCGA-19-5956-01 14 73413857 73413857 C T DCAF4 Missense_Mutation p.S229L 0.29 deleterious(0.01) possibly_damaging(0.631) TCGA-19-5956-01 14 73490900 73490900 C A ZFYVE1 Missense_Mutation p.R106M 0.30 deleterious(0.01) probably_damaging(0.944) TCGA-19-5956-01 14 73712868 73712868 C T PAPLN Silent p.L107L 0.39 TCGA-19-5956-01 14 73732153 73732153 C T PAPLN Silent p.A1040A 0.17 TCGA-19-5956-01 14 74083820 74083820 A G ACOT6 5'UTR 0.31 TCGA-19-5956-01 14 74179562 74179562 A C PNMA1 Missense_Mutation p.L261V 0.31 tolerated(0.76) probably_damaging(0.999) TCGA-19-5956-01 14 74193318 74193318 C A ELMSAN1 Nonsense_Mutation p.G800* 0.19 TCGA-19-5956-01 14 74514750 74514750 G A CCDC176 Silent p.E255E 0.10 TCGA-19-5956-01 14 74539255 74539255 G A ALDH6A1 Silent p.I57I 0.10 TCGA-19-5956-01 14 74971731 74971731 C T LTBP2 Missense_Mutation p.A1442T 0.54 tolerated(0.34) benign(0.006) TCGA-19-5956-01 14 75505050 75505050 G A MLH3 Silent p.G1212G 0.10 TCGA-19-5956-01 14 75513709 75513709 C T MLH3 Missense_Mutation p.E884K 0.31 tolerated(0.31) benign(0.439) TCGA-19-5956-01 14 76045769 76045769 A G FLVCR2 Missense_Mutation p.T152A 0.60 tolerated(0.22) benign(0.005) TCGA-19-5956-01 14 76156582 76156582 G A TTLL5 Missense_Mutation p.R140Q 0.63 deleterious(0) probably_damaging(0.911) TCGA-19-5956-01 14 77297557 77297557 T G C14orf166B Missense_Mutation p.F77V 0.26 tolerated(0.49) benign(0.097) TCGA-19-5956-01 14 77845346 77845346 G T SAMD15 Nonsense_Mutation p.E529* 0.22 TCGA-19-5956-01 14 77925990 77925990 G A AHSA1 Missense_Mutation p.D38N 0.32 tolerated(0.12) possibly_damaging(0.635) TCGA-19-5956-01 14 77934829 77934829 G A AHSA1 Nonsense_Mutation p.W274* 0.16 TCGA-19-5956-01 14 78140215 78140215 G T ALKBH1 Missense_Mutation p.F370L 0.20 tolerated_low_confidence(0.64) benign(0) TCGA-19-5956-01 14 80130222 80130222 C T NRXN3 Silent p.R809R 0.24 TCGA-19-5956-01 14 81209608 81209608 T C CEP128 Missense_Mutation p.K873E 0.23 deleterious(0.03) benign(0.212) TCGA-19-5956-01 14 81382817 81382817 C T CEP128 Silent p.T25T 0.58 TCGA-19-5956-01 14 81574771 81574771 G T TSHR Nonsense_Mutation p.G223* 0.07 TCGA-19-5956-01 14 81609462 81609462 G A TSHR Missense_Mutation p.V354I 0.54 tolerated(0.3) benign(0.019) TCGA-19-5956-01 14 81743629 81743629 G A STON2 Missense_Mutation p.R676W 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 14 81864667 81864667 T G STON2 Missense_Mutation p.E20D 0.21 tolerated_low_confidence(0.51) benign(0.023) TCGA-19-5956-01 14 81961475 81961475 G A SEL1L Missense_Mutation p.L379F 0.20 deleterious(0.01) possibly_damaging(0.585) TCGA-19-5956-01 14 81993086 81993086 G A SEL1L Missense_Mutation p.R111W 0.63 deleterious_low_confidence(0.01) benign(0.001) TCGA-19-5956-01 14 88737243 88737243 C T KCNK10 Intron 0.29 TCGA-19-5956-01 14 88892904 88892904 C A SPATA7 Missense_Mutation p.S234Y 0.13 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 14 89178613 89178613 A G EML5 Splice_Site p.X553_splice 0.14 TCGA-19-5956-01 14 89212627 89212627 G A EML5 Missense_Mutation p.R120C 0.61 tolerated(0.11) benign(0.049) TCGA-19-5956-01 14 89307539 89307539 C T TTC8 Missense_Mutation p.T163M 0.35 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 14 89628871 89628871 T G FOXN3 Missense_Mutation p.K454Q 0.09 deleterious(0) possibly_damaging(0.721) TCGA-19-5956-01 14 90782986 90782986 C T NRDE2 Missense_Mutation p.D115N 0.12 tolerated(0.16) benign(0.3) TCGA-19-5956-01 14 91161849 91161849 G A TTC7B Nonsense_Mutation p.R258* 0.33 TCGA-19-5956-01 14 91386598 91386598 G T RPS6KA5 Missense_Mutation p.S253Y 0.27 deleterious(0) probably_damaging(1) TCGA-19-5956-01 14 91749783 91749783 G A CCDC88C Missense_Mutation p.A1507V 0.50 tolerated(0.2) benign(0.007) TCGA-19-5956-01 14 91779893 91779893 C T CCDC88C Missense_Mutation p.R756H 0.39 deleterious(0.01) benign(0.052) TCGA-19-5956-01 14 91780124 91780124 C T CCDC88C Missense_Mutation p.R679K 0.33 tolerated(1) benign(0.007) TCGA-19-5956-01 14 91931648 91931648 G A SMEK1 Silent p.S579S 0.29 TCGA-19-5956-01 14 92549596 92549596 G A ATXN3 Missense_Mutation p.S161F 0.62 deleterious(0.02) possibly_damaging(0.76) TCGA-19-5956-01 14 93424660 93424660 C T ITPK1 Missense_Mutation p.V186M 0.39 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 14 93650256 93650256 G A MOAP1 Missense_Mutation p.A111V 0.32 deleterious(0.01) benign(0.103) TCGA-19-5956-01 14 93723588 93723588 G A BTBD7 Nonsense_Mutation p.R521* 0.16 TCGA-19-5956-01 14 94004475 94004475 G T UNC79 Missense_Mutation p.E244D 0.56 tolerated(0.11) probably_damaging(0.994) TCGA-19-5956-01 14 94041403 94041403 G T UNC79 Splice_Site p.X514_splice 0.29 TCGA-19-5956-01 14 94083576 94083576 C T UNC79 Missense_Mutation p.R1207C 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 14 94405613 94405613 C T ASB2 Missense_Mutation p.M486I 0.60 deleterious(0.04) benign(0.031) TCGA-19-5956-01 14 94405820 94405820 G A ASB2 Silent p.F417F 0.38 TCGA-19-5956-01 14 94505419 94505419 G A OTUB2 Silent p.E70E 0.36 TCGA-19-5956-01 14 94510975 94510975 C T OTUB2 Missense_Mutation p.S116F 0.22 deleterious(0.04) possibly_damaging(0.521) TCGA-19-5956-01 14 94545591 94545617 AGAAGGCTCCAACCCTTTTTTCCCTTT - DDX24 In_Frame_Del p.K158_S166del 0.45 TCGA-19-5956-01 14 94909454 94909454 G T SERPINA11 Missense_Mutation p.F342L 0.13 tolerated(1) benign(0.001) TCGA-19-5956-01 14 94942581 94942581 G A SERPINA9 5'UTR 0.08 TCGA-19-5956-01 14 94964645 94964645 A G SERPINA12 Silent p.Y30Y 0.60 TCGA-19-5956-01 14 95030233 95030233 C T SERPINA4 Silent p.R138R 0.57 TCGA-19-5956-01 14 95030468 95030468 G T SERPINA4 Missense_Mutation p.A217S 0.08 deleterious(0.01) possibly_damaging(0.817) TCGA-19-5956-01 14 95035850 95035850 G A SERPINA4 Missense_Mutation p.R401Q 0.25 tolerated(0.13) possibly_damaging(0.59) TCGA-19-5956-01 14 95081102 95081102 G A SERPINA3 Silent p.T108T 0.25 TCGA-19-5956-01 14 95556921 95556921 G A DICER1 Nonsense_Mutation p.R1895* 0.31 TCGA-19-5956-01 14 95570258 95570258 C T DICER1 Missense_Mutation p.E1159K 0.25 tolerated_low_confidence(0.31) benign(0.001) TCGA-19-5956-01 14 95574429 95574429 A C DICER1 Missense_Mutation p.I813S 0.19 deleterious(0) probably_damaging(0.983) TCGA-19-5956-01 14 95574431 95574431 C T DICER1 Splice_Site p.X813_splice 0.15 TCGA-19-5956-01 14 95583032 95583032 C A DICER1 Missense_Mutation p.V504L 0.33 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 14 95596505 95596505 C T DICER1 Missense_Mutation p.A155T 0.48 tolerated(0.29) benign(0.081) TCGA-19-5956-01 14 95657906 95657906 G A CLMN Missense_Mutation p.L1002F 0.28 deleterious_low_confidence(0.04) benign(0.263) TCGA-19-5956-01 14 95905378 95905378 G A SYNE3 Missense_Mutation p.R790C 0.33 deleterious(0.03) possibly_damaging(0.453) TCGA-19-5956-01 14 95934203 95934203 C T SYNE3 Silent p.G82G 0.39 TCGA-19-5956-01 14 96134836 96134836 C A TCL6 Intron 0.34 TCGA-19-5956-01 14 96800138 96800138 C T ATG2B Missense_Mutation p.R365Q 0.11 tolerated(0.26) probably_damaging(0.919) TCGA-19-5956-01 14 96811000 96811000 C T ATG2B Missense_Mutation p.R191Q 0.21 tolerated(0.09) probably_damaging(0.945) TCGA-19-5956-01 14 99927669 99927669 C T SETD3 Missense_Mutation p.V69I 0.13 tolerated(0.41) benign(0.002) TCGA-19-5956-01 14 99968696 99968696 C T CCNK Missense_Mutation p.P243L 0.32 deleterious(0) possibly_damaging(0.462) TCGA-19-5956-01 15 100269703 100269703 C T LYSMD4 Silent p.G173G 0.39 TCGA-19-5956-01 15 100672243 100672243 G A ADAMTS17 Missense_Mutation p.R564C 0.56 deleterious(0.01) probably_damaging(0.94) TCGA-19-5956-01 15 101447350 101447350 C A ALDH1A3 Missense_Mutation p.L420M 0.45 tolerated(0.52) benign(0.11) TCGA-19-5956-01 15 101523863 101523863 G A LRRK1 Missense_Mutation p.G131E 0.60 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 101561374 101561374 C T LRRK1 Missense_Mutation p.L576F 0.49 deleterious(0) probably_damaging(0.951) TCGA-19-5956-01 15 101569414 101569414 C T LRRK1 Silent p.I980I 0.34 TCGA-19-5956-01 15 102226170 102226170 G A TARSL2 Silent p.S472S 0.24 TCGA-19-5956-01 15 102345929 102345929 G T OR4F6 Nonsense_Mutation p.E3* 0.20 TCGA-19-5956-01 15 102358387 102358387 G A OR4F15 5'UTR 0.26 TCGA-19-5956-01 15 102359009 102359009 C T OR4F15 Missense_Mutation p.S207F 0.11 deleterious_low_confidence(0) probably_damaging(1) TCGA-19-5956-01 15 20488771 20488771 A C CHEK2P2 RNA 0.06 TCGA-19-5956-01 15 20495396 20495396 C A CHEK2P2 RNA 0.13 TCGA-19-5956-01 15 20495442 20495442 C T CHEK2P2 RNA 0.08 TCGA-19-5956-01 15 20588629 20588629 G T HERC2P3 RNA 0.14 TCGA-19-5956-01 15 20642673 20642673 C T HERC2P3 RNA 0.18 TCGA-19-5956-01 15 20649540 20649540 C A HERC2P3 RNA 0.07 TCGA-19-5956-01 15 20657656 20657656 G A HERC2P3 RNA 0.14 TCGA-19-5956-01 15 22332441 22332441 A C RP11-69H14.6 RNA 0.11 TCGA-19-5956-01 15 22383498 22383498 C T OR4N4 3'UTR 0.29 TCGA-19-5956-01 15 22709706 22709706 A G AC116165.1 5'Flank 0.18 TCGA-19-5956-01 15 22954339 22954339 C T CYFIP1 Missense_Mutation p.R497W 0.57 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 15 22958189 22958189 C T CYFIP1 Missense_Mutation p.T611M 0.23 deleterious(0.04) possibly_damaging(0.487) TCGA-19-5956-01 15 23261836 23261836 G T GOLGA8I Missense_Mutation p.E316D 0.13 tolerated(0.06) possibly_damaging(0.462) TCGA-19-5956-01 15 23333864 23333864 C T HERC2P2 RNA 0.29 TCGA-19-5956-01 15 23690536 23690536 G T GOLGA6L2 Missense_Mutation p.T45N 0.38 possibly_damaging(0.848) TCGA-19-5956-01 15 23889449 23889449 G A MAGEL2 Silent p.N544N 0.29 TCGA-19-5956-01 15 23931721 23931721 C T NDN Missense_Mutation p.R215H 0.44 deleterious(0.05) benign(0.059) TCGA-19-5956-01 15 23932005 23932005 C T NDN Nonsense_Mutation p.W120* 0.27 TCGA-19-5956-01 15 24921521 24921521 C T NPAP1 Silent p.I169I 0.62 TCGA-19-5956-01 15 24921703 24921703 C T NPAP1 Missense_Mutation p.A230V 0.46 tolerated(0.35) benign(0.116) TCGA-19-5956-01 15 24922060 24922060 G A NPAP1 Missense_Mutation p.G349D 0.22 tolerated(0.07) possibly_damaging(0.48) TCGA-19-5956-01 15 25200166 25200166 G A SNURF 5'UTR 0.60 TCGA-19-5956-01 15 25219513 25219513 G A SNRPN 5'UTR 0.40 TCGA-19-5956-01 15 25222149 25222149 C T SNRPN Silent p.V131V 0.26 TCGA-19-5956-01 15 25325293 25325293 C T SNORD116-14 RNA 0.39 TCGA-19-5956-01 15 25336798 25336798 C T SNORD116-23 5'Flank 0.27 TCGA-19-5956-01 15 25432710 25432710 C A SNORD115-10 RNA 0.12 TCGA-19-5956-01 15 25442582 25442582 C T SNORD115-14 3'Flank 0.36 TCGA-19-5956-01 15 25451429 25451429 A G SNORD115-20 RNA 0.36 TCGA-19-5956-01 15 25453274 25453274 C T SNORD115-21 RNA 0.05 TCGA-19-5956-01 15 25455123 25455123 C A SNORD115-22 RNA 0.23 TCGA-19-5956-01 15 25456973 25456973 G A SNORD115-23 RNA 0.49 TCGA-19-5956-01 15 25463934 25463934 T G SNORD115-28 5'Flank 0.07 TCGA-19-5956-01 15 25463964 25463964 C A SNORD115-28 5'Flank 0.17 TCGA-19-5956-01 15 25472321 25472321 G T SNORD115-31 RNA 0.14 TCGA-19-5956-01 15 25616059 25616059 C T UBE3A Missense_Mutation p.R424Q 0.10 tolerated(0.25) benign(0.031) TCGA-19-5956-01 15 25616186 25616186 T G UBE3A Missense_Mutation p.N382H 0.08 deleterious(0) possibly_damaging(0.827) TCGA-19-5956-01 15 25926004 25926004 C T ATP10A Missense_Mutation p.A1211T 0.25 deleterious(0) benign(0.045) TCGA-19-5956-01 15 27128499 27128499 G A GABRA5 Missense_Mutation p.V98M 0.30 tolerated(0.16) probably_damaging(1) TCGA-19-5956-01 15 28116374 28116374 C T OCA2 Missense_Mutation p.A724T 0.31 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 15 28359940 28359940 C T HERC2 Silent p.K4577K 0.30 TCGA-19-5956-01 15 29393948 29393948 G A APBA2 Silent p.K495K 0.16 TCGA-19-5956-01 15 30000883 30000883 G A TJP1 Missense_Mutation p.S1577L 0.47 deleterious_low_confidence(0.02) benign(0) TCGA-19-5956-01 15 30029527 30029527 C T TJP1 Missense_Mutation p.V450I 0.12 tolerated(0.1) possibly_damaging(0.844) TCGA-19-5956-01 15 31214499 31214499 G A FAN1 Missense_Mutation p.G705D 0.53 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 15 31233954 31233954 G T MTMR10 Missense_Mutation p.L685M 0.20 tolerated(0.38) probably_damaging(1) TCGA-19-5956-01 15 31295173 31295173 C A TRPM1 Nonsense_Mutation p.E1261* 0.45 TCGA-19-5956-01 15 32915739 32915739 G T ARHGAP11A Nonsense_Mutation p.E83* 0.25 TCGA-19-5956-01 15 32926187 32926187 A G ARHGAP11A Missense_Mutation p.K430R 0.29 deleterious(0.04) probably_damaging(0.933) TCGA-19-5956-01 15 32928780 32928780 G A ARHGAP11A Silent p.A602A 0.51 TCGA-19-5956-01 15 33191042 33191042 T C FMN1 Missense_Mutation p.Y1013C 0.48 tolerated(0.21) benign(0.057) TCGA-19-5956-01 15 33261551 33261551 C T FMN1 Missense_Mutation p.R561K 0.05 tolerated(1) unknown(0) TCGA-19-5956-01 15 33359398 33359398 G A FMN1 Missense_Mutation p.P230S 0.26 tolerated_low_confidence(0.11) unknown(0) TCGA-19-5956-01 15 33603270 33603270 C T RYR3 Silent p.G8G 0.68 TCGA-19-5956-01 15 33858936 33858936 C T RYR3 Missense_Mutation p.R402C 0.14 benign(0.386) TCGA-19-5956-01 15 33954582 33954582 C T RYR3 Silent p.S1617S 0.21 TCGA-19-5956-01 15 33990193 33990193 C A RYR3 Missense_Mutation p.S2082Y 0.10 possibly_damaging(0.88) TCGA-19-5956-01 15 34023886 34023886 C T RYR3 Missense_Mutation p.A2472V 0.45 possibly_damaging(0.611) TCGA-19-5956-01 15 34078006 34078006 C A RYR3 Missense_Mutation p.L3138I 0.23 probably_damaging(0.998) TCGA-19-5956-01 15 34078103 34078103 G A RYR3 Missense_Mutation p.S3170N 0.09 benign(0.2) TCGA-19-5956-01 15 34130046 34130046 G A RYR3 Silent p.T3955T 0.09 TCGA-19-5956-01 15 34355561 34355561 C T CHRM5 Nonsense_Mutation p.R215* 0.22 TCGA-19-5956-01 15 34355596 34355596 C T CHRM5 Silent p.D226D 0.32 TCGA-19-5956-01 15 34534355 34534355 T G SLC12A6 Missense_Mutation p.I704L 0.09 tolerated(1) benign(0.009) TCGA-19-5956-01 15 34640630 34640630 G A NUTM1 Silent p.P159P 0.44 TCGA-19-5956-01 15 34640658 34640658 C T NUTM1 Silent p.L169L 0.25 TCGA-19-5956-01 15 34648271 34648271 A C NUTM1 Missense_Mutation p.K660Q 0.32 tolerated(0.15) benign(0.074) TCGA-19-5956-01 15 34649277 34649277 G T NUTM1 Missense_Mutation p.R995M 0.36 tolerated(0.07) possibly_damaging(0.525) TCGA-19-5956-01 15 34649675 34649675 C T NUTM1 Nonsense_Mutation p.R1128* 0.49 TCGA-19-5956-01 15 35202499 35202499 G A AQR Silent p.G500G 0.37 TCGA-19-5956-01 15 35529608 35529608 C T ANP32AP1 RNA 0.47 TCGA-19-5956-01 15 37184549 37184549 C A MEIS2 Missense_Mutation p.R420I 0.13 deleterious_low_confidence(0) benign(0.011) TCGA-19-5956-01 15 38818584 38818584 C T RASGRP1 Missense_Mutation p.R81Q 0.08 tolerated(0.39) benign(0.014) TCGA-19-5956-01 15 38990411 38990411 C A C15orf53 Missense_Mutation p.L69M 0.16 tolerated_low_confidence(0.22) benign(0.102) TCGA-19-5956-01 15 39885399 39885399 C T THBS1 Missense_Mutation p.T989I 0.51 deleterious(0.02) probably_damaging(0.993) TCGA-19-5956-01 15 39909949 39909949 C A FSIP1 Missense_Mutation p.E562D 0.12 tolerated(0.15) benign(0.013) TCGA-19-5956-01 15 40005704 40005704 C T FSIP1 Missense_Mutation p.D377N 0.09 deleterious(0.03) probably_damaging(0.932) TCGA-19-5956-01 15 40056060 40056060 T G FSIP1 Missense_Mutation p.K174T 0.53 tolerated(0.09) benign(0.125) TCGA-19-5956-01 15 40093300 40093300 C A GPR176 3'UTR 0.07 TCGA-19-5956-01 15 40259731 40259731 C T EIF2AK4 Missense_Mutation p.L402F 0.30 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 15 40266063 40266063 C T EIF2AK4 Intron 0.26 TCGA-19-5956-01 15 40398157 40398158 - G BMF Frame_Shift_Ins p.L44Pfs*47 0.33 TCGA-19-5956-01 15 40660966 40660966 G A DISP2 Missense_Mutation p.D885N 0.13 tolerated(0.5) benign(0.008) TCGA-19-5956-01 15 40751540 40751540 G A BAHD1 Missense_Mutation p.V293I 0.30 tolerated(0.21) benign(0) TCGA-19-5956-01 15 40854976 40854976 G T C15orf57 Missense_Mutation p.S89Y 0.16 deleterious(0) probably_damaging(0.973) TCGA-19-5956-01 15 40855184 40855184 C T C15orf57 Missense_Mutation p.A20T 0.26 tolerated(0.31) benign(0.019) TCGA-19-5956-01 15 40914425 40914425 G T CASC5 Missense_Mutation p.D681Y 0.11 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 15 40949292 40949292 C T CASC5 Silent p.Y2205Y 0.46 TCGA-19-5956-01 15 41222877 41222877 C A DLL4 Missense_Mutation p.P131T 0.29 tolerated(1) benign(0.269) TCGA-19-5956-01 15 41227298 41227298 G A DLL4 Missense_Mutation p.S408N 0.50 tolerated(0.08) benign(0.007) TCGA-19-5956-01 15 41476243 41476243 C T EXD1 Silent p.V477V 0.49 TCGA-19-5956-01 15 41488183 41488183 C T EXD1 Missense_Mutation p.R138Q 0.25 tolerated(0.32) benign(0.364) TCGA-19-5956-01 15 41501724 41501724 C T EXD1 Missense_Mutation p.R112H 0.38 tolerated(0.06) probably_damaging(0.998) TCGA-19-5956-01 15 41762563 41762563 G A RTF1 Missense_Mutation p.R333Q 0.13 tolerated(0.17) benign(0.078) TCGA-19-5956-01 15 41767772 41767772 G T RTF1 Nonsense_Mutation p.E446* 0.26 TCGA-19-5956-01 15 42146404 42146404 C T SPTBN5 Splice_Site p.X3207_splice 0.42 TCGA-19-5956-01 15 42302406 42302406 G T PLA2G4E Intron 0.10 TCGA-19-5956-01 15 42459046 42459046 G A VPS39 Silent p.S481S 0.28 TCGA-19-5956-01 15 42529728 42529728 C A TMEM87A Missense_Mutation p.R257I 0.46 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 15 42632091 42632091 G A GANC Missense_Mutation p.A690T 0.44 benign(0.004) TCGA-19-5956-01 15 42727666 42727666 G A ZNF106 Silent p.C1576C 0.13 TCGA-19-5956-01 15 42742582 42742582 G T ZNF106 Missense_Mutation p.L607I 0.09 tolerated(0.12) benign(0.03) TCGA-19-5956-01 15 42743713 42743713 G A ZNF106 Missense_Mutation p.R230C 0.19 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 15 42858909 42858909 C T HAUS2 Silent p.I201I 0.35 TCGA-19-5956-01 15 43020206 43020206 G A CDAN1 Missense_Mutation p.A965V 0.26 tolerated(0.16) probably_damaging(0.98) TCGA-19-5956-01 15 43120211 43120211 C T TTBK2 Missense_Mutation p.R151H 0.18 deleterious(0.01) probably_damaging(0.957) TCGA-19-5956-01 15 43309324 43309324 G A UBR1 Missense_Mutation p.T999I 0.53 tolerated(0.13) benign(0.001) TCGA-19-5956-01 15 43317174 43317174 C T UBR1 Silent p.P864P 0.13 TCGA-19-5956-01 15 43351380 43351380 C T UBR1 Silent p.R332R 0.12 TCGA-19-5956-01 15 43478366 43478366 A G CCNDBP1 Missense_Mutation p.T62A 0.09 tolerated(1) benign(0.003) TCGA-19-5956-01 15 43571350 43571350 C A TGM7 Missense_Mutation p.D602Y 0.25 deleterious(0.02) probably_damaging(0.959) TCGA-19-5956-01 15 43584285 43584285 G T TGM7 Silent p.V150V 0.14 TCGA-19-5956-01 15 43639294 43639294 G T ADAL Intron 0.48 TCGA-19-5956-01 15 43678051 43678051 G T TUBGCP4 Missense_Mutation p.E262D 0.51 tolerated(0.37) benign(0.043) TCGA-19-5956-01 15 43813810 43813810 C T MAP1A Missense_Mutation p.R47C 0.09 probably_damaging(0.997) TCGA-19-5956-01 15 43813981 43813981 C T MAP1A Missense_Mutation p.R104C 0.40 probably_damaging(0.999) TCGA-19-5956-01 15 43816087 43816087 G T MAP1A Nonsense_Mutation p.E806* 0.16 TCGA-19-5956-01 15 43900142 43900142 C A STRC Missense_Mutation p.R1238M 0.13 deleterious(0) possibly_damaging(0.839) TCGA-19-5956-01 15 44028496 44028496 C T RNU6-354P 5'Flank 0.08 TCGA-19-5956-01 15 44086035 44086035 G A SERF2 Silent p.T126T 0.14 TCGA-19-5956-01 15 44153586 44153586 T C WDR76 Splice_Site p.X539_splice 0.06 TCGA-19-5956-01 15 44158545 44158545 T C WDR76 Silent p.N612N 0.38 TCGA-19-5956-01 15 44705569 44705569 G A CASC4 Missense_Mutation p.D426N 0.61 deleterious(0.04) benign(0.046) TCGA-19-5956-01 15 44806962 44806962 G A CTDSPL2 Splice_Site p.X345_splice 0.22 TCGA-19-5956-01 15 44907619 44907619 G T SPG11 Missense_Mutation p.L994I 0.31 deleterious(0.01) possibly_damaging(0.801) TCGA-19-5956-01 15 44949495 44949495 C A SPG11 Splice_Site p.X223_splice 0.15 TCGA-19-5956-01 15 44955591 44955591 C T SPG11 Nonsense_Mutation p.W85* 0.23 TCGA-19-5956-01 15 45398010 45398010 G T DUOX2 Missense_Mutation p.S722Y 0.33 tolerated(1) benign(0.235) TCGA-19-5956-01 15 45660322 45660322 G A GATM Silent p.G207G 0.37 TCGA-19-5956-01 15 45697554 45697554 G T SPATA5L1 Nonsense_Mutation p.E376* 0.22 TCGA-19-5956-01 15 45847803 45847803 G A RP11-96O20.2 5'Flank 0.45 TCGA-19-5956-01 15 45974706 45974706 A C SQRDL Missense_Mutation p.S299R 0.10 deleterious(0.02) benign(0.333) TCGA-19-5956-01 15 45983304 45983304 G A SQRDL 3'UTR 0.57 TCGA-19-5956-01 15 45983307 45983307 G T SQRDL 3'UTR 0.16 TCGA-19-5956-01 15 48053622 48053622 C A SEMA6D Nonsense_Mutation p.Y147* 0.28 TCGA-19-5956-01 15 48063240 48063240 C A SEMA6D Missense_Mutation p.A827D 0.58 deleterious(0.01) probably_damaging(0.993) TCGA-19-5956-01 15 48450990 48450990 C T MYEF2 Missense_Mutation p.A283T 0.11 deleterious(0) probably_damaging(0.952) TCGA-19-5956-01 15 48458201 48458201 C A MYEF2 Nonsense_Mutation p.E152* 0.54 TCGA-19-5956-01 15 48566818 48566818 G A SLC12A1 Missense_Mutation p.G818E 0.30 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 48707933 48707933 G A FBN1 Silent p.C2617C 0.12 TCGA-19-5956-01 15 48717649 48717649 A C FBN1 Missense_Mutation p.F2457C 0.21 probably_damaging(0.983) TCGA-19-5956-01 15 48719837 48719837 G A FBN1 Silent p.I2377I 0.50 TCGA-19-5956-01 15 48736858 48736858 C A FBN1 Splice_Site p.X1973_splice 0.11 TCGA-19-5956-01 15 48780650 48780650 G A FBN1 Silent p.H1041H 0.21 TCGA-19-5956-01 15 48780682 48780682 C A FBN1 Nonsense_Mutation p.E1031* 0.10 TCGA-19-5956-01 15 49284428 49284428 G A SECISBP2L 3'UTR 0.30 TCGA-19-5956-01 15 49304927 49304927 G T SECISBP2L Missense_Mutation p.S550Y 0.24 deleterious(0) possibly_damaging(0.492) TCGA-19-5956-01 15 49447796 49447796 G T COPS2 5'UTR 0.14 TCGA-19-5956-01 15 49448093 49448093 G T COPS2 5'Flank 0.62 TCGA-19-5956-01 15 49860457 49860457 C A FAM227B Missense_Mutation p.K244N 0.24 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 15 50999945 50999945 C T SPPL2A 3'UTR 0.41 TCGA-19-5956-01 15 51289635 51289635 C A AP4E1 Missense_Mutation p.S820Y 0.12 tolerated(0.38) possibly_damaging(0.519) TCGA-19-5956-01 15 51350108 51350108 G A TNFAIP8L3 Silent p.I283I 0.13 TCGA-19-5956-01 15 51350267 51350267 C A TNFAIP8L3 Missense_Mutation p.K230N 0.17 deleterious(0.04) probably_damaging(0.928) TCGA-19-5956-01 15 51780158 51780158 G A DMXL2 Missense_Mutation p.A1737V 0.14 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 15 51799419 51799419 G T DMXL2 Missense_Mutation p.F892L 0.08 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 15 51973906 51973906 C A SCG3 5'UTR 0.38 TCGA-19-5956-01 15 52252901 52252901 C A LEO1 Missense_Mutation p.G317C 0.25 deleterious(0.01) possibly_damaging(0.789) TCGA-19-5956-01 15 52844050 52844050 G T ARPP19 3'UTR 0.21 TCGA-19-5956-01 15 52874462 52874462 G A FAM214A Silent p.D1040D 0.08 TCGA-19-5956-01 15 52901483 52901483 G T FAM214A Missense_Mutation p.S543Y 0.14 tolerated(0.06) possibly_damaging(0.845) TCGA-19-5956-01 15 52901567 52901567 G A FAM214A Missense_Mutation p.S515L 0.24 tolerated(0.28) benign(0.005) TCGA-19-5956-01 15 54007415 54007415 G A WDR72 Silent p.C163C 0.46 TCGA-19-5956-01 15 54015037 54015037 G T WDR72 Missense_Mutation p.F74L 0.13 deleterious(0.05) probably_damaging(1) TCGA-19-5956-01 15 54542478 54542478 C T UNC13C Missense_Mutation p.T1095I 0.21 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 15 54556467 54556467 G A UNC13C Missense_Mutation p.E1184K 0.43 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-19-5956-01 15 55647582 55647582 C A PIGB Silent p.V539V 0.42 TCGA-19-5956-01 15 55789953 55789953 A G DYX1C1 Silent p.Y76Y 0.10 TCGA-19-5956-01 15 55972326 55972326 C T PRTG Missense_Mutation p.G300E 0.15 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 56142799 56142799 G A NEDD4 Missense_Mutation p.R777W 0.34 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 15 56435061 56435061 T G RFX7 Missense_Mutation p.M106L 0.58 deleterious(0.03) benign(0.011) TCGA-19-5956-01 15 56726544 56726544 A C MNS1 Missense_Mutation p.F354C 0.22 tolerated(0.15) probably_damaging(0.983) TCGA-19-5956-01 15 57526304 57526304 C A TCF12 Missense_Mutation p.S345Y 0.42 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 15 58285153 58285153 A C ALDH1A2 Missense_Mutation p.L225R 0.12 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 58467154 58467154 C T AQP9 Silent p.I138I 0.25 TCGA-19-5956-01 15 58913701 58913701 T G ADAM10 Missense_Mutation p.K494Q 0.41 tolerated(0.28) benign(0.012) TCGA-19-5956-01 15 59124006 59124006 C T FAM63B Missense_Mutation p.A420V 0.31 deleterious(0.02) probably_damaging(0.997) TCGA-19-5956-01 15 59146826 59146826 T A FAM63B 3'UTR 0.19 TCGA-19-5956-01 15 59191793 59191793 G A SLTM Silent p.C311C 0.32 TCGA-19-5956-01 15 59368199 59368199 G A RNF111 Missense_Mutation p.G578E 0.52 deleterious_low_confidence(0) probably_damaging(1) TCGA-19-5956-01 15 59399840 59399840 C T CCNB2 Missense_Mutation p.P80S 0.10 tolerated(0.11) benign(0.101) TCGA-19-5956-01 15 59430457 59430457 C T MYO1E Missense_Mutation p.A1064T 0.28 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 59453319 59453319 T G MYO1E Missense_Mutation p.N913T 0.18 deleterious(0.02) benign(0.257) TCGA-19-5956-01 15 59466008 59466008 G A MYO1E Silent p.F757F 0.28 TCGA-19-5956-01 15 59480399 59480399 C T MYO1E Missense_Mutation p.E608K 0.09 tolerated(0.36) probably_damaging(0.999) TCGA-19-5956-01 15 59499530 59499530 G T LDHAL6B Missense_Mutation p.D131Y 0.32 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 15 59553620 59553620 G A MYO1E Missense_Mutation p.A79V 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 15 59911017 59911017 C T GCNT3 Missense_Mutation p.R194W 0.17 deleterious(0.01) possibly_damaging(0.846) TCGA-19-5956-01 15 60741388 60741388 G T NARG2 Missense_Mutation p.A593D 0.10 tolerated(0.2) benign(0.147) TCGA-19-5956-01 15 60745904 60745904 G T NARG2 Silent p.I341I 0.36 TCGA-19-5956-01 15 62214859 62214859 G T VPS13C Missense_Mutation p.L2238I 0.11 deleterious(0.02) possibly_damaging(0.589) TCGA-19-5956-01 15 62233987 62233987 C T VPS13C Missense_Mutation p.E1810K 0.35 tolerated(0.93) benign(0.069) TCGA-19-5956-01 15 62994968 62994968 C T TLN2 Nonsense_Mutation p.R637* 0.12 TCGA-19-5956-01 15 63075980 63075980 C T TLN2 Missense_Mutation p.S1876L 0.46 deleterious(0.01) possibly_damaging(0.509) TCGA-19-5956-01 15 63353951 63353951 G A TPM1 Intron 0.13 TCGA-19-5956-01 15 63419231 63419231 G T LACTB Nonsense_Mutation p.E200* 0.46 TCGA-19-5956-01 15 63578791 63578791 G T APH1B Missense_Mutation p.G107C 0.31 deleterious(0.01) possibly_damaging(0.838) TCGA-19-5956-01 15 63990932 63990932 C T HERC1 Missense_Mutation p.A1634T 0.31 possibly_damaging(0.526) TCGA-19-5956-01 15 64067096 64067096 C A HERC1 Missense_Mutation p.G243C 0.17 probably_damaging(0.995) TCGA-19-5956-01 15 64410433 64410433 C T SNX1 Missense_Mutation p.T130I 0.42 tolerated(0.15) benign(0.002) TCGA-19-5956-01 15 64706318 64706318 A G TRIP4 Missense_Mutation p.T360A 0.36 tolerated(0.29) benign(0.003) TCGA-19-5956-01 15 64968068 64968068 C T ZNF609 Silent p.Y1005Y 0.36 TCGA-19-5956-01 15 65490126 65490126 A C CILP Missense_Mutation p.L833R 0.10 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 15 65563371 65563371 G T PARP16 Missense_Mutation p.L72I 0.11 tolerated(0.26) benign(0.073) TCGA-19-5956-01 15 65621257 65621257 G A IGDCC3 Missense_Mutation p.S812L 0.09 tolerated_low_confidence(0.17) benign(0.32) TCGA-19-5956-01 15 65623781 65623781 G A IGDCC3 Silent p.I455I 0.26 TCGA-19-5956-01 15 65684665 65684665 C A IGDCC4 Missense_Mutation p.E643D 0.16 tolerated(0.28) benign(0.012) TCGA-19-5956-01 15 65856659 65856659 G A PTPLAD1 Silent p.P213P 0.23 TCGA-19-5956-01 15 65877142 65877142 T C VWA9 Missense_Mutation p.N345S 0.37 tolerated(0.22) benign(0.133) TCGA-19-5956-01 15 65918203 65918203 C A SLC24A1 Missense_Mutation p.F595L 0.14 benign(0) TCGA-19-5956-01 15 65959854 65959854 C T DENND4A Missense_Mutation p.R1724H 0.18 deleterious(0) possibly_damaging(0.844) TCGA-19-5956-01 15 65989650 65989650 C T DENND4A Missense_Mutation p.D968N 0.08 tolerated(0.26) benign(0.007) TCGA-19-5956-01 15 65994101 65994103 TTA - DENND4A In_Frame_Del p.N852del 0.35 TCGA-19-5956-01 15 66797723 66797723 T C ZWILCH Missense_Mutation p.L16P 0.13 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 15 66845510 66845510 C T LCTL Missense_Mutation p.D337N 0.25 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 66850178 66850178 C A LCTL Silent p.V268V 0.09 TCGA-19-5956-01 15 67073909 67073909 C T SMAD6 3'UTR 0.29 TCGA-19-5956-01 15 67681243 67681243 C A IQCH Missense_Mutation p.L511I 0.35 deleterious(0) possibly_damaging(0.749) TCGA-19-5956-01 15 68583381 68583381 C T FEM1B Missense_Mutation p.A562V 0.56 deleterious(0.01) probably_damaging(0.913) TCGA-19-5956-01 15 69238041 69238041 A C SPESP1 Missense_Mutation p.K56N 0.16 tolerated(0.05) possibly_damaging(0.812) TCGA-19-5956-01 15 69339752 69339752 G A NOX5 Splice_Site p.X565_splice 0.21 TCGA-19-5956-01 15 69339794 69339794 C A NOX5 Silent p.I578I 0.13 TCGA-19-5956-01 15 69714725 69714725 G A KIF23 Missense_Mutation p.E172K 0.48 deleterious(0) possibly_damaging(0.897) TCGA-19-5956-01 15 70959978 70959978 C A UACA Missense_Mutation p.K1015N 0.08 deleterious(0.05) possibly_damaging(0.48) TCGA-19-5956-01 15 70961356 70961356 G T UACA Missense_Mutation p.A556D 0.13 deleterious(0) possibly_damaging(0.675) TCGA-19-5956-01 15 72021002 72021002 C T THSD4 Missense_Mutation p.S491L 0.55 deleterious(0.01) possibly_damaging(0.821) TCGA-19-5956-01 15 72105759 72105759 C A CTD-2524L6.3 5'Flank 0.46 TCGA-19-5956-01 15 72170403 72170403 G A MYO9A Missense_Mutation p.T1970I 0.18 deleterious(0.01) benign(0.185) TCGA-19-5956-01 15 72192318 72192318 C T MYO9A Silent p.K1060K 0.34 TCGA-19-5956-01 15 72432179 72432179 C T SENP8 Missense_Mutation p.A72V 0.23 deleterious(0.03) benign(0.158) TCGA-19-5956-01 15 72454352 72454352 A G GRAMD2 Nonstop_Mutation p.*355Qext*96 0.18 TCGA-19-5956-01 15 72454632 72454632 T C GRAMD2 Missense_Mutation p.D348G 0.18 tolerated(1) benign(0) TCGA-19-5956-01 15 72499083 72499083 G A PKM Missense_Mutation p.R376C 0.43 deleterious(0.02) benign(0.005) TCGA-19-5956-01 15 72533791 72533791 C T PARP6 3'UTR 0.33 TCGA-19-5956-01 15 72647917 72647917 A C HEXA Missense_Mutation p.V132G 0.18 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 15 73048732 73048732 C T ADPGK Missense_Mutation p.D234N 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 74336926 74336926 C T PML Silent p.S742S 0.24 TCGA-19-5956-01 15 74367202 74367202 G T GOLGA6A Missense_Mutation p.L330I 0.65 deleterious(0.04) benign(0.015) TCGA-19-5956-01 15 74917256 74917256 G A CLK3 Missense_Mutation p.V331I 0.44 tolerated(0.07) benign(0.096) TCGA-19-5956-01 15 75042120 75042120 T C CYP1A2 Missense_Mutation p.L14P 0.22 deleterious(0.01) probably_damaging(0.985) TCGA-19-5956-01 15 75094810 75094810 C T CSK Nonsense_Mutation p.R437* 0.36 TCGA-19-5956-01 15 75137352 75137352 T C SCAMP2 3'UTR 0.16 TCGA-19-5956-01 15 75216059 75216059 C T COX5A Missense_Mutation p.R131K 0.47 tolerated(0.41) benign(0.016) TCGA-19-5956-01 15 75248618 75248618 G A RPP25 Missense_Mutation p.R103C 0.58 deleterious(0.01) probably_damaging(0.985) TCGA-19-5956-01 15 75586770 75586770 C A GOLGA6D Missense_Mutation p.T679N 0.39 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 15 75648527 75648527 G T MAN2C1 Missense_Mutation p.L991M 0.31 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 15 75655035 75655035 G A MAN2C1 Missense_Mutation p.T282I 0.26 deleterious(0.05) possibly_damaging(0.867) TCGA-19-5956-01 15 75761041 75761041 C A PTPN9 3'UTR 0.13 TCGA-19-5956-01 15 75815474 75815474 C A PTPN9 Missense_Mutation p.R137I 0.07 tolerated(0.31) probably_damaging(0.983) TCGA-19-5956-01 15 75932333 75932333 C T IMP3 Silent p.A59A 0.21 TCGA-19-5956-01 15 75942786 75942786 G A SNX33 Missense_Mutation p.R448H 0.14 deleterious(0.01) possibly_damaging(0.595) TCGA-19-5956-01 15 75968023 75968023 C T CSPG4 Silent p.E2279E 0.18 TCGA-19-5956-01 15 75982076 75982076 T G CSPG4 Missense_Mutation p.T444P 0.11 deleterious(0.02) possibly_damaging(0.501) TCGA-19-5956-01 15 76183288 76183288 C A UBE2Q2 Nonsense_Mutation p.S321* 0.20 TCGA-19-5956-01 15 76225097 76225097 C T FBXO22 Missense_Mutation p.T289I 0.16 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 15 76630252 76630252 G T ISL2 Missense_Mutation p.E64D 0.18 deleterious(0.03) benign(0.139) TCGA-19-5956-01 15 76797291 76797291 G T SCAPER Missense_Mutation p.Q955K 0.16 tolerated(0.32) benign(0.135) TCGA-19-5956-01 15 76866510 76866510 G T SCAPER Missense_Mutation p.L943M 0.20 deleterious(0.05) probably_damaging(0.988) TCGA-19-5956-01 15 77759491 77759491 C T HMG20A Nonsense_Mutation p.R98* 0.39 TCGA-19-5956-01 15 77769956 77769956 C A HMG20A Missense_Mutation p.F225L 0.31 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 15 78211514 78211514 G T RP11-114H24.7 Intron 0.12 TCGA-19-5956-01 15 78213750 78213750 G A RP11-114H24.7 Intron 0.21 TCGA-19-5956-01 15 78295800 78295800 A C TBC1D2B Missense_Mutation p.S807R 0.15 deleterious(0.01) benign(0.424) TCGA-19-5956-01 15 78452404 78452404 G A IDH3A Intron 0.23 TCGA-19-5956-01 15 78461336 78461336 G T IDH3A Missense_Mutation p.D364Y 0.08 deleterious(0.01) possibly_damaging(0.615) TCGA-19-5956-01 15 79183337 79183337 G A MORF4L1 Silent p.T149T 0.33 TCGA-19-5956-01 15 79229719 79229719 G A CTSH Missense_Mutation p.T57M 0.26 deleterious(0.03) benign(0.104) TCGA-19-5956-01 15 79614379 79614379 G A TMED3 Silent p.T159T 0.16 TCGA-19-5956-01 15 80450503 80450503 C A FAH Silent p.V61V 0.17 TCGA-19-5956-01 15 81561880 81561880 G A IL16 Missense_Mutation p.G189E 0.21 deleterious(0.01) benign(0.393) TCGA-19-5956-01 15 81589273 81589273 C T IL16 Missense_Mutation p.A636V 0.17 tolerated(0.63) benign(0.004) TCGA-19-5956-01 15 81598311 81598311 G T IL16 Missense_Mutation p.E1161D 0.06 deleterious(0) probably_damaging(0.918) TCGA-19-5956-01 15 81625522 81625522 G A TMC3 Silent p.I847I 0.53 TCGA-19-5956-01 15 82336484 82336484 C T MEX3B Missense_Mutation p.A243T 0.35 tolerated(0.4) benign(0.034) TCGA-19-5956-01 15 83224750 83224750 G T CPEB1 Silent p.V243V 0.14 TCGA-19-5956-01 15 83345365 83345365 G A AP3B2 Silent p.L505L 0.36 TCGA-19-5956-01 15 83451693 83451693 T - FSD2 Frame_Shift_Del p.I274Yfs*4 0.13 TCGA-19-5956-01 15 83784636 83784636 T C TM6SF1 Missense_Mutation p.I79T 0.37 tolerated(0.26) possibly_damaging(0.474) TCGA-19-5956-01 15 83926108 83926108 G A BNC1 3'UTR 0.25 TCGA-19-5956-01 15 83926166 83926166 A G BNC1 3'UTR 0.08 TCGA-19-5956-01 15 83931973 83931973 C T BNC1 Missense_Mutation p.R677H 0.24 tolerated(0.77) benign(0.001) TCGA-19-5956-01 15 84683459 84683459 C A ADAMTSL3 Missense_Mutation p.S1380Y 0.24 deleterious(0.02) possibly_damaging(0.836) TCGA-19-5956-01 15 85164655 85164655 G T ZSCAN2 Missense_Mutation p.R410I 0.15 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 15 85383561 85383561 G A ALPK3 Missense_Mutation p.E553K 0.10 tolerated(1) benign(0.003) TCGA-19-5956-01 15 85405923 85405923 G A ALPK3 Missense_Mutation p.G1598D 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 85411357 85411357 G T ALPK3 Missense_Mutation p.K1798N 0.30 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 86125060 86125060 G A AKAP13 Missense_Mutation p.R1254H 0.44 tolerated_low_confidence(0.16) benign(0.003) TCGA-19-5956-01 15 86312409 86312409 G A KLHL25 Silent p.F211F 0.45 TCGA-19-5956-01 15 87066058 87066058 G T AGBL1 Missense_Mutation p.S812I 0.31 deleterious(0.01) possibly_damaging(0.633) TCGA-19-5956-01 15 89002739 89002739 T G MRPL46 3'UTR 0.24 TCGA-19-5956-01 15 89400994 89400995 - G ACAN Frame_Shift_Ins p.E1728Gfs*17 0.18 TCGA-19-5956-01 15 89401125 89401125 C A ACAN Missense_Mutation p.S1770Y 0.18 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 15 89417239 89417239 G T ACAN Missense_Mutation p.Q2500H 0.14 deleterious(0) possibly_damaging(0.563) TCGA-19-5956-01 15 89422493 89422493 G T HAPLN3 Silent p.V167V 0.09 TCGA-19-5956-01 15 89864983 89864983 G A POLG Missense_Mutation p.T861I 0.31 deleterious(0) probably_damaging(1) TCGA-19-5956-01 15 90022581 90022581 G A RHCG Missense_Mutation p.A270V 0.44 tolerated(0.14) benign(0.029) TCGA-19-5956-01 15 90171796 90171796 G T KIF7 Silent p.R1296R 0.11 TCGA-19-5956-01 15 90245149 90245149 C T WDR93 Nonsense_Mutation p.R58* 0.45 TCGA-19-5956-01 15 90347598 90347598 C A ANPEP Missense_Mutation p.E355D 0.21 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 15 90447172 90447172 C T C15orf38-AP3S2 Silent p.A115A 0.42 TCGA-19-5956-01 15 90972882 90972882 A C IQGAP1 Missense_Mutation p.E125A 0.28 tolerated(0.64) benign(0.011) TCGA-19-5956-01 15 91172638 91172638 C T CRTC3 Silent p.S380S 0.11 TCGA-19-5956-01 15 91310233 91310233 C A BLM Missense_Mutation p.L763I 0.40 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 15 91496419 91496419 G A UNC45A Missense_Mutation p.R819Q 0.18 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 15 91525083 91525083 G A PRC1 Silent p.C132C 0.24 TCGA-19-5956-01 15 91548976 91548976 G A VPS33B Silent p.F326F 0.42 TCGA-19-5956-01 15 91769751 91769751 A C SV2B Missense_Mutation p.E86D 0.25 tolerated(0.31) benign(0.008) TCGA-19-5956-01 15 91809845 91809845 G T SV2B Nonsense_Mutation p.E348* 0.24 TCGA-19-5956-01 15 93492244 93492244 G T CHD2 Missense_Mutation p.E480D 0.08 tolerated(0.47) benign(0.009) TCGA-19-5956-01 15 93498704 93498704 G A CHD2 Missense_Mutation p.A591T 0.16 deleterious(0.04) benign(0.372) TCGA-19-5956-01 15 94841613 94841613 C T MCTP2 Missense_Mutation p.A40V 0.16 tolerated(0.31) benign(0.001) TCGA-19-5956-01 15 95022240 95022240 C T MCTP2 Missense_Mutation p.R872W 0.13 deleterious(0) probably_damaging(0.973) TCGA-19-5956-01 15 98512469 98512469 C T ARRDC4 Nonsense_Mutation p.R248* 0.12 TCGA-19-5956-01 15 98514431 98514431 A G ARRDC4 3'UTR 0.25 TCGA-19-5956-01 15 99251184 99251184 C T IGF1R Missense_Mutation p.A163V 0.25 deleterious(0.04) benign(0.05) TCGA-19-5956-01 15 99486166 99486166 C T IGF1R Nonsense_Mutation p.R1158* 0.09 TCGA-19-5956-01 15 99512664 99512664 C A PGPEP1L Missense_Mutation p.D121Y 0.24 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 15 99696254 99696254 C A TTC23 Intron 0.35 TCGA-19-5956-01 15 99696263 99696263 C A TTC23 Intron 0.59 TCGA-19-5956-01 16 10525128 10525128 C T ATF7IP2 Silent p.N217N 0.28 TCGA-19-5956-01 16 10729701 10729701 C T TEKT5 Silent p.P387P 0.33 TCGA-19-5956-01 16 10770001 10770001 C T TEKT5 Missense_Mutation p.D301N 0.40 tolerated(0.29) benign(0.013) TCGA-19-5956-01 16 10788749 10788749 C A TEKT5 5'UTR 0.48 TCGA-19-5956-01 16 10995950 10995950 C A CIITA Nonsense_Mutation p.C179* 0.16 TCGA-19-5956-01 16 10996014 10996014 C T CIITA Missense_Mutation p.R201C 0.51 tolerated(0.19) benign(0) TCGA-19-5956-01 16 1144819 1144819 G T C1QTNF8 Missense_Mutation p.P35H 0.31 tolerated(0.07) probably_damaging(0.996) TCGA-19-5956-01 16 11862275 11862275 A T ZC3H7A Missense_Mutation p.F419Y 0.13 tolerated(1) benign(0.242) TCGA-19-5956-01 16 11966820 11966820 G T GSPT1 3'UTR 0.50 TCGA-19-5956-01 16 1260413 1260413 G T CACNA1H Missense_Mutation p.D1297Y 0.15 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 16 12798557 12798557 G A CPPED1 Silent p.I213I 0.43 TCGA-19-5956-01 16 12798731 12798731 G A CPPED1 Silent p.V155V 0.16 TCGA-19-5956-01 16 12798838 12798838 G T CPPED1 Missense_Mutation p.P120T 0.39 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 16 135670 135670 T C MPG Missense_Mutation p.V264A 0.21 deleterious(0) possibly_damaging(0.658) TCGA-19-5956-01 16 1374813 1374813 C T UBE2I 3'UTR 0.62 TCGA-19-5956-01 16 1388556 1388556 G A BAIAP3 Silent p.S37S 0.32 TCGA-19-5956-01 16 1394298 1394298 G T BAIAP3 Missense_Mutation p.D563Y 0.08 deleterious(0) possibly_damaging(0.886) TCGA-19-5956-01 16 1400933 1400933 A G TSR3 Missense_Mutation p.F134S 0.15 deleterious(0) possibly_damaging(0.771) TCGA-19-5956-01 16 14020449 14020449 C T ERCC4 Silent p.I140I 0.41 TCGA-19-5956-01 16 14031698 14031698 T G ERCC4 Silent p.A629A 0.57 TCGA-19-5956-01 16 14956914 14956914 C T NOMO1 Missense_Mutation p.T422I 0.42 deleterious(0.02) benign(0.061) TCGA-19-5956-01 16 15129947 15129947 G T PDXDC1 Missense_Mutation p.D728Y 0.24 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-19-5956-01 16 1544366 1544366 C A TELO2 Silent p.I28I 0.08 TCGA-19-5956-01 16 1549333 1549333 C T TELO2 Missense_Mutation p.T311M 0.12 tolerated(0.07) possibly_damaging(0.696) TCGA-19-5956-01 16 15854413 15854413 G T MYH11 Missense_Mutation p.A418D 0.16 probably_damaging(0.999) TCGA-19-5956-01 16 15931901 15931901 G A MYH11 Missense_Mutation p.T70M 0.11 possibly_damaging(0.87) TCGA-19-5956-01 16 16138415 16138415 G A ABCC1 Silent p.Q306Q 0.41 TCGA-19-5956-01 16 16162085 16162085 G A ABCC1 Missense_Mutation p.V584M 0.09 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 16 16263539 16263539 G A ABCC6 Missense_Mutation p.R987C 0.17 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 16 16364024 16364024 G A NOMO3 Silent p.A647A 0.05 TCGA-19-5956-01 16 1705265 1705265 C A CRAMP1L Missense_Mutation p.F361L 0.54 tolerated(0.05) probably_damaging(0.969) TCGA-19-5956-01 16 1810383 1810383 A G MAPK8IP3 Missense_Mutation p.N435S 0.09 deleterious(0) probably_damaging(0.912) TCGA-19-5956-01 16 18544384 18544384 C A NOMO2 Missense_Mutation p.E446D 0.17 tolerated(0.34) benign(0.001) TCGA-19-5956-01 16 1866994 1866994 C A HAGH Missense_Mutation p.R216I 0.10 deleterious(0) benign(0.142) TCGA-19-5956-01 16 18861769 18861769 C A SMG1 Missense_Mutation p.Q1691H 0.24 deleterious(0.02) benign(0.187) TCGA-19-5956-01 16 19126942 19126942 G A ITPRIPL2 Missense_Mutation p.A387T 0.41 tolerated(0.2) probably_damaging(0.989) TCGA-19-5956-01 16 19451685 19451685 G A TMC5 Missense_Mutation p.D109N 0.16 tolerated_low_confidence(0.15) benign(0.038) TCGA-19-5956-01 16 19656245 19656245 T C C16orf62 Missense_Mutation p.Y724H 0.52 tolerated(0.59) benign(0) TCGA-19-5956-01 16 19721875 19721875 G A KNOP1 Missense_Mutation p.R341C 0.48 deleterious(0) benign(0.206) TCGA-19-5956-01 16 19883331 19883331 G A GPRC5B Silent p.S279S 0.30 TCGA-19-5956-01 16 20331732 20331732 T C GP2 Missense_Mutation p.K240R 0.11 tolerated(0.09) benign(0.443) TCGA-19-5956-01 16 20376743 20376743 G T PDILT Missense_Mutation p.F412L 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 16 20384384 20384384 G A PDILT Missense_Mutation p.R248C 0.37 deleterious(0) possibly_damaging(0.862) TCGA-19-5956-01 16 20442600 20442600 G A ACSM5 Missense_Mutation p.R422H 0.54 deleterious(0) possibly_damaging(0.881) TCGA-19-5956-01 16 2048277 2048277 C T ZNF598 Missense_Mutation p.D891N 0.26 benign(0.019) TCGA-19-5956-01 16 20570610 20570610 G T ACSM2B Missense_Mutation p.L113M 0.31 deleterious(0.03) probably_damaging(1) TCGA-19-5956-01 16 20807897 20807897 T G ERI2 3'UTR 0.57 TCGA-19-5956-01 16 20843484 20843484 G T AC004381.6 Nonsense_Mutation p.E389* 0.22 TCGA-19-5956-01 16 20955940 20955940 C A DNAH3 Nonsense_Mutation p.E3797* 0.21 TCGA-19-5956-01 16 20959876 20959876 C T DNAH3 Missense_Mutation p.E3758K 0.54 tolerated(0.09) benign(0.052) TCGA-19-5956-01 16 20974688 20974688 G A DNAH3 Silent p.F3506F 0.11 TCGA-19-5956-01 16 20975027 20975027 C A DNAH3 Missense_Mutation p.W3393C 0.12 deleterious(0.01) possibly_damaging(0.464) TCGA-19-5956-01 16 20975375 20975375 C T DNAH3 Silent p.Q3277Q 0.41 TCGA-19-5956-01 16 20994170 20994170 G A DNAH3 Missense_Mutation p.R2578W 0.42 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 16 20996480 20996480 C A DNAH3 Missense_Mutation p.E2528D 0.40 tolerated(0.14) benign(0.209) TCGA-19-5956-01 16 21098348 21098348 G A DNAH3 Missense_Mutation p.A900V 0.50 deleterious(0.02) benign(0.005) TCGA-19-5956-01 16 21215401 21215401 C A ZP2 Missense_Mutation p.A308S 0.32 tolerated(0.33) benign(0.059) TCGA-19-5956-01 16 21222876 21222876 G T ZP2 5'UTR 0.19 TCGA-19-5956-01 16 21261126 21261126 G A ANKS4B Missense_Mutation p.C80Y 0.50 deleterious(0.02) benign(0.186) TCGA-19-5956-01 16 2159118 2159118 G A PKD1 Missense_Mutation p.S2017L 0.10 probably_damaging(0.979) TCGA-19-5956-01 16 21658803 21658803 G A IGSF6 Silent p.G26G 0.46 TCGA-19-5956-01 16 21847891 21847891 A T NPIPB4 Missense_Mutation p.L606H 0.28 possibly_damaging(0.869) TCGA-19-5956-01 16 21854869 21854869 C A NPIPB4 Missense_Mutation p.R128I 0.09 probably_damaging(0.961) TCGA-19-5956-01 16 21991931 21991931 C T UQCRC2 Silent p.V396V 0.07 TCGA-19-5956-01 16 22155614 22155614 G T VWA3A Missense_Mutation p.R880I 0.27 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 16 22163938 22163938 G T VWA3A Missense_Mutation p.G1130C 0.20 deleterious(0) possibly_damaging(0.627) TCGA-19-5956-01 16 22358958 22358958 A G CDR2 Silent p.S231S 0.23 TCGA-19-5956-01 16 2258825 2258825 G A MLST8 Missense_Mutation p.G310S 0.39 deleterious(0.01) probably_damaging(0.991) TCGA-19-5956-01 16 2260190 2260190 C T BRICD5 Silent p.A91A 0.36 TCGA-19-5956-01 16 2289912 2289912 A G ECI1 3'UTR 0.23 TCGA-19-5956-01 16 2347797 2347797 G T ABCA3 Silent p.S674S 0.08 TCGA-19-5956-01 16 23494283 23494283 G A GGA2 Missense_Mutation p.R281W 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 16 23546598 23546598 C T EARS2 Missense_Mutation p.R190H 0.36 deleterious(0.03) benign(0.032) TCGA-19-5956-01 16 23700057 23700057 T A PLK1 Missense_Mutation p.Y421N 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 16 23706646 23706646 G A ERN2 Missense_Mutation p.R607W 0.20 deleterious(0) possibly_damaging(0.799) TCGA-19-5956-01 16 23713538 23713538 G T ERN2 Missense_Mutation p.L428M 0.15 tolerated(0.26) possibly_damaging(0.51) TCGA-19-5956-01 16 23721543 23721543 C T ERN2 Missense_Mutation p.A134T 0.43 tolerated(0.34) benign(0.023) TCGA-19-5956-01 16 23721836 23721836 C A ERN2 Splice_Site p.X126_splice 0.25 TCGA-19-5956-01 16 2376445 2376445 G A ABCA3 Missense_Mutation p.A8V 0.16 tolerated(0.31) benign(0.001) TCGA-19-5956-01 16 23766369 23766369 C A CHP2 5'UTR 0.27 TCGA-19-5956-01 16 240085 240085 C A LUC7L Nonsense_Mutation p.E286* 0.05 TCGA-19-5956-01 16 24226156 24226156 G A PRKCB 3'UTR 0.24 TCGA-19-5956-01 16 24582225 24582225 C T RBBP6 Missense_Mutation p.R1280W 0.09 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 16 24741609 24741609 G T TNRC6A Missense_Mutation p.R14I 0.11 deleterious_low_confidence(0.02) benign(0.001) TCGA-19-5956-01 16 24788511 24788511 C T TNRC6A Missense_Mutation p.R141C 0.49 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 16 24834782 24834782 C A TNRC6A Missense_Mutation p.A1848D 0.20 deleterious(0) probably_damaging(1) TCGA-19-5956-01 16 24881244 24881244 G T SLC5A11 Missense_Mutation p.S77I 0.12 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 16 25176005 25176005 G T LCMT1 Missense_Mutation p.S219I 0.30 tolerated(0.06) benign(0.008) TCGA-19-5956-01 16 25251066 25251066 G T ZKSCAN2 3'UTR 0.51 TCGA-19-5956-01 16 25251071 25251071 G T ZKSCAN2 3'UTR 0.21 TCGA-19-5956-01 16 2580596 2580596 G A CEMP1 Missense_Mutation p.P160L 0.26 deleterious_low_confidence(0) possibly_damaging(0.851) TCGA-19-5956-01 16 2581060 2581060 G T CEMP1 Missense_Mutation p.S5R 0.30 tolerated_low_confidence(0.08) possibly_damaging(0.504) TCGA-19-5956-01 16 27357834 27357834 C T IL4R Silent p.S136S 0.54 TCGA-19-5956-01 16 27483080 27483080 C A GTF3C1 Missense_Mutation p.Q1505H 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 16 27556793 27556793 C T GTF3C1 Silent p.P91P 0.31 TCGA-19-5956-01 16 27818807 27818807 C T GSG1L Splice_Site p.X300_splice 0.52 TCGA-19-5956-01 16 2807824 2807824 G A SRRM2 Silent p.K131K 0.18 TCGA-19-5956-01 16 2813892 2813892 C A SRRM2 Missense_Mutation p.F1121L 0.32 unknown(0) TCGA-19-5956-01 16 2816837 2816837 G A SRRM2 Missense_Mutation p.R2103Q 0.42 possibly_damaging(0.491) TCGA-19-5956-01 16 2816885 2816885 G A SRRM2 Missense_Mutation p.R2119H 0.51 probably_damaging(0.989) TCGA-19-5956-01 16 28495439 28495439 G T CLN3 Missense_Mutation p.S226R 0.32 deleterious(0.01) benign(0.11) TCGA-19-5956-01 16 28503106 28503106 G T CLN3 5'UTR 0.18 TCGA-19-5956-01 16 28603090 28603090 G A CCDC101 3'UTR 0.57 TCGA-19-5956-01 16 28618160 28618160 C T SULT1A1 Nonsense_Mutation p.W172* 0.48 TCGA-19-5956-01 16 2871658 2871658 C T PRSS21 3'UTR 0.10 TCGA-19-5956-01 16 28883967 28883967 C T SH2B1 Missense_Mutation p.S613L 0.27 deleterious(0) benign(0.113) TCGA-19-5956-01 16 28914676 28914676 C T ATP2A1 Silent p.T965T 0.30 TCGA-19-5956-01 16 28916291 28916291 C T RABEP2 Silent p.T561T 0.11 TCGA-19-5956-01 16 28916327 28916327 C A RABEP2 Missense_Mutation p.E549D 0.28 tolerated(0.26) possibly_damaging(0.739) TCGA-19-5956-01 16 28944431 28944431 C A CD19 Missense_Mutation p.S185R 0.25 tolerated(0.09) possibly_damaging(0.883) TCGA-19-5956-01 16 28967632 28967632 G T NFATC2IP Missense_Mutation p.D274Y 0.11 deleterious(0) probably_damaging(0.959) TCGA-19-5956-01 16 28986815 28986815 G A SPNS1 Missense_Mutation p.V82I 0.30 tolerated(0.13) possibly_damaging(0.771) TCGA-19-5956-01 16 28997897 28997897 C A LAT Intron 0.28 TCGA-19-5956-01 16 2903140 2903140 G A PRSS22 Missense_Mutation p.A303V 0.25 tolerated(0.34) benign(0.005) TCGA-19-5956-01 16 29089240 29089240 G A RRN3P2 RNA 0.11 TCGA-19-5956-01 16 29675084 29675084 T G SPN Missense_Mutation p.V12G 0.25 tolerated(0.43) unknown(0) TCGA-19-5956-01 16 29913128 29913128 G A ASPHD1 Missense_Mutation p.R279Q 0.12 deleterious(0.04) possibly_damaging(0.751) TCGA-19-5956-01 16 29922455 29922455 G A KCTD13 Silent p.F199F 0.33 TCGA-19-5956-01 16 29934517 29934517 C T KCTD13 Silent p.A136A 0.09 TCGA-19-5956-01 16 29974328 29974328 T C TMEM219 5'UTR 0.08 TCGA-19-5956-01 16 29997645 29997645 C T TAOK2 Silent p.H684H 0.13 TCGA-19-5956-01 16 29997764 29997764 G A TAOK2 Missense_Mutation p.R724H 0.16 deleterious(0) possibly_damaging(0.891) TCGA-19-5956-01 16 30005858 30005858 G A HIRIP3 Missense_Mutation p.P203L 0.10 tolerated(0.1) benign(0.019) TCGA-19-5956-01 16 30119700 30119700 G A GDPD3 Missense_Mutation p.S254L 0.52 tolerated(0.75) benign(0.001) TCGA-19-5956-01 16 30129735 30129735 C T MAPK3 Missense_Mutation p.A160T 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 16 30133186 30133186 T C MAPK3 Silent p.R104R 0.08 TCGA-19-5956-01 16 30198518 30198518 G A CORO1A Missense_Mutation p.E204K 0.30 deleterious(0) benign(0.301) TCGA-19-5956-01 16 30206084 30206084 G A SLX1A Missense_Mutation p.G71D 0.09 deleterious(0) probably_damaging(1) TCGA-19-5956-01 16 30593934 30593934 C A ZNF785 Missense_Mutation p.D389Y 0.24 deleterious(0) probably_damaging(0.953) TCGA-19-5956-01 16 30724999 30724999 G A SRCAP Silent p.E820E 0.25 TCGA-19-5956-01 16 30745329 30745329 G T SRCAP Missense_Mutation p.Q2203H 0.38 possibly_damaging(0.711) TCGA-19-5956-01 16 31008850 31008850 G T STX1B Silent p.S109S 0.30 TCGA-19-5956-01 16 31075285 31075285 G A ZNF668 Missense_Mutation p.R189W 0.42 deleterious(0) possibly_damaging(0.466) TCGA-19-5956-01 16 31088005 31088005 G T ZNF646 Missense_Mutation p.E120D 0.14 tolerated(0.05) probably_damaging(0.971) TCGA-19-5956-01 16 31095014 31095014 G A PRSS53 3'UTR 0.20 TCGA-19-5956-01 16 31095081 31095081 C A PRSS53 3'UTR 0.51 TCGA-19-5956-01 16 31097681 31097681 G A PRSS53 Missense_Mutation p.P214S 0.08 tolerated(0.14) probably_damaging(1) TCGA-19-5956-01 16 31138527 31138527 T C KAT8 Silent p.Y178Y 0.31 TCGA-19-5956-01 16 3118193 3118193 G A IL32 Missense_Mutation p.E52K 0.38 tolerated(0.14) probably_damaging(0.981) TCGA-19-5956-01 16 3119215 3119215 G A IL32 Silent p.Q142Q 0.12 TCGA-19-5956-01 16 31202818 31202818 G A FUS 3'UTR 0.44 TCGA-19-5956-01 16 31336290 31336290 G A ITGAM Silent p.E768E 0.28 TCGA-19-5956-01 16 31404671 31404671 G A ITGAD 5'UTR 0.07 TCGA-19-5956-01 16 31434483 31434483 G T ITGAD Missense_Mutation p.K943N 0.35 tolerated(0.34) benign(0.018) TCGA-19-5956-01 16 31477744 31477744 G T ARMC5 Missense_Mutation p.S781I 0.73 deleterious(0) possibly_damaging(0.735) TCGA-19-5956-01 16 31501643 31501643 G A SLC5A2 Silent p.P602P 0.22 TCGA-19-5956-01 16 3169963 3169963 G A ZNF205 Silent p.A434A 0.11 TCGA-19-5956-01 16 31926308 31926308 T C ZNF267 Silent p.C246C 0.10 TCGA-19-5956-01 16 3255084 3255084 G T OR1F1 Missense_Mutation p.V280L 0.35 deleterious(0.02) benign(0.17) TCGA-19-5956-01 16 3274344 3274344 G A ZNF200 Missense_Mutation p.R246W 0.25 deleterious(0.01) possibly_damaging(0.852) TCGA-19-5956-01 16 3333750 3333750 C T ZNF263 5'UTR 0.22 TCGA-19-5956-01 16 3350631 3350631 A C TIGD7 5'UTR 0.37 TCGA-19-5956-01 16 3363067 3363067 G T ZNF75A 5'UTR 0.19 TCGA-19-5956-01 16 33965525 33965525 C T RNA5-8SP2 RNA 0.14 TCGA-19-5956-01 16 3406340 3406340 G A OR2C1 Missense_Mutation p.A134T 0.10 tolerated(0.47) benign(0) TCGA-19-5956-01 16 3458599 3458599 G T ZNF174 Nonsense_Mutation p.G302* 0.35 TCGA-19-5956-01 16 3486664 3486664 G T ZNF597 Missense_Mutation p.D345E 0.39 tolerated(1) benign(0.002) TCGA-19-5956-01 16 3490896 3490897 - A ZNF597 Frame_Shift_Ins p.S24Ffs*37 0.36 TCGA-19-5956-01 16 3591850 3591850 G T NLRC3 Missense_Mutation p.A1104D 0.27 deleterious(0) benign(0.148) TCGA-19-5956-01 16 3611718 3611718 C T NLRC3 Missense_Mutation p.R714H 0.30 tolerated(0.72) benign(0.009) TCGA-19-5956-01 16 3652222 3652222 C T SLX4 Missense_Mutation p.A283T 0.13 tolerated(0.38) benign(0.036) TCGA-19-5956-01 16 396589 396589 C T AXIN1 Missense_Mutation p.R146Q 0.55 deleterious(0) possibly_damaging(0.468) TCGA-19-5956-01 16 4163773 4163773 G A ADCY9 Silent p.S557S 0.39 TCGA-19-5956-01 16 4164175 4164175 G A ADCY9 Silent p.F423F 0.32 TCGA-19-5956-01 16 4245560 4245560 C A SRL Nonsense_Mutation p.E202* 0.23 TCGA-19-5956-01 16 4245726 4245726 G A SRL Silent p.I146I 0.13 TCGA-19-5956-01 16 436907 436907 C T TMEM8A 5'Flank 0.58 TCGA-19-5956-01 16 4408021 4408021 G A CORO7 Silent p.G847G 0.10 TCGA-19-5956-01 16 449447 449447 C T NME4 Silent p.I98I 0.10 TCGA-19-5956-01 16 4519442 4519442 C T NMRAL1 Missense_Mutation p.R22H 0.10 deleterious(0.05) benign(0.013) TCGA-19-5956-01 16 4562584 4562584 G A CDIP1 Missense_Mutation p.R206C 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 16 46637536 46637536 G A SHCBP1 Silent p.C376C 0.44 TCGA-19-5956-01 16 46695657 46695657 G T VPS35 Silent p.I728I 0.25 TCGA-19-5956-01 16 46773979 46773979 C T MYLK3 Silent p.E186E 0.28 TCGA-19-5956-01 16 46998558 46998558 C A DNAJA2 Missense_Mutation p.D247Y 0.21 deleterious(0) probably_damaging(0.948) TCGA-19-5956-01 16 4733850 4733850 G A MGRN1 Missense_Mutation p.R512Q 0.35 tolerated_low_confidence(0.27) benign(0.013) TCGA-19-5956-01 16 4790527 4790527 G A C16orf71 Missense_Mutation p.R217Q 0.31 tolerated(0.47) benign(0.273) TCGA-19-5956-01 16 48139236 48139236 C G ABCC12 Silent p.G829G 0.56 TCGA-19-5956-01 16 48155646 48155646 C A ABCC12 Nonsense_Mutation p.E565* 0.14 TCGA-19-5956-01 16 48201044 48201044 C T ABCC11 3'UTR 0.54 TCGA-19-5956-01 16 48250154 48250154 C A ABCC11 Silent p.G274G 0.19 TCGA-19-5956-01 16 48265871 48265871 G T ABCC11 5'UTR 0.25 TCGA-19-5956-01 16 48330046 48330046 T C LONP2 Silent p.L502L 0.55 TCGA-19-5956-01 16 4895128 4895128 C A GLYR1 Missense_Mutation p.K34N 0.10 deleterious(0) possibly_damaging(0.455) TCGA-19-5956-01 16 4920276 4920276 G A UBN1 Silent p.A415A 0.50 TCGA-19-5956-01 16 4925333 4925333 C T UBN1 Silent p.N974N 0.24 TCGA-19-5956-01 16 4935058 4935058 G A PPL Nonsense_Mutation p.R1200* 0.15 TCGA-19-5956-01 16 4935559 4935559 G T PPL Missense_Mutation p.L1033I 0.12 tolerated(0.4) benign(0.434) TCGA-19-5956-01 16 49672681 49672681 C T ZNF423 Missense_Mutation p.G128S 0.24 tolerated(0.16) probably_damaging(0.995) TCGA-19-5956-01 16 49764824 49764824 C T ZNF423 Silent p.R45R 0.41 TCGA-19-5956-01 16 50344619 50344619 C T ADCY7 Silent p.L728L 0.22 TCGA-19-5956-01 16 50346816 50346816 T G ADCY7 Missense_Mutation p.S874A 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-19-5956-01 16 50353882 50353882 C T BRD7 Missense_Mutation p.V607I 0.10 tolerated(0.17) probably_damaging(0.996) TCGA-19-5956-01 16 50353883 50353883 G A BRD7 Silent p.I606I 0.22 TCGA-19-5956-01 16 50813676 50813676 G T CYLD Missense_Mutation p.E413D 0.52 tolerated(0.29) probably_damaging(0.984) TCGA-19-5956-01 16 5105293 5105293 G T C16orf89 Silent p.A274A 0.37 TCGA-19-5956-01 16 52472789 52472790 - T TOX3 3'UTR 0.20 TCGA-19-5956-01 16 52473641 52473641 C T TOX3 Silent p.S409S 0.15 TCGA-19-5956-01 16 53272257 53272257 G A CHD9 Missense_Mutation p.R879Q 0.09 benign(0.045) TCGA-19-5956-01 16 53338364 53338364 C A CHD9 Missense_Mutation p.S2149Y 0.27 unknown(0) TCGA-19-5956-01 16 53348784 53348784 C T CHD9 Missense_Mutation p.A2455V 0.12 unknown(0) TCGA-19-5956-01 16 53348939 53348939 T C CHD9 Silent p.L2507L 0.33 TCGA-19-5956-01 16 53515707 53515707 G A RBL2 Missense_Mutation p.R1070Q 0.21 tolerated(0.17) benign(0.006) TCGA-19-5956-01 16 55522573 55522573 C T MMP2 Silent p.C317C 0.18 TCGA-19-5956-01 16 55562315 55562315 T G LPCAT2 Missense_Mutation p.F113C 0.21 tolerated(0.24) benign(0.003) TCGA-19-5956-01 16 55794574 55794574 C A CES1P1 RNA 0.14 TCGA-19-5956-01 16 55886932 55886932 C T CES5A Silent p.P407P 0.35 TCGA-19-5956-01 16 56436902 56436902 C A AMFR Missense_Mutation p.E323D 0.12 deleterious(0.03) benign(0.021) TCGA-19-5956-01 16 57003852 57003852 G A CETP Missense_Mutation p.D156N 0.31 tolerated(0.13) benign(0.005) TCGA-19-5956-01 16 57159901 57159901 G A CPNE2 Missense_Mutation p.D353N 0.24 deleterious(0.02) probably_damaging(0.918) TCGA-19-5956-01 16 58018643 58018643 G A TEPP Missense_Mutation p.R185H 0.26 tolerated(0.13) benign(0.198) TCGA-19-5956-01 16 58079108 58079108 G A MMP15 Missense_Mutation p.A590T 0.56 tolerated(0.47) benign(0) TCGA-19-5956-01 16 58079205 58079205 G A MMP15 Missense_Mutation p.R622Q 0.36 tolerated(0.45) possibly_damaging(0.857) TCGA-19-5956-01 16 58564170 58564170 G A CNOT1 Missense_Mutation p.P2087S 0.12 tolerated(0.32) benign(0.088) TCGA-19-5956-01 16 61687387 61687387 G A CDH8 3'UTR 0.20 TCGA-19-5956-01 16 61891042 61891042 A C CDH8 Missense_Mutation p.F216L 0.11 deleterious(0.02) probably_damaging(0.994) TCGA-19-5956-01 16 65032544 65032544 C A CDH11 Missense_Mutation p.K148N 0.22 deleterious(0) possibly_damaging(0.904) TCGA-19-5956-01 16 66620966 66620966 C T CMTM2 Missense_Mutation p.R171W 0.46 deleterious(0.03) benign(0.01) TCGA-19-5956-01 16 66918289 66918289 G T PDP2 Missense_Mutation p.R34S 0.09 deleterious_low_confidence(0.01) benign(0.013) TCGA-19-5956-01 16 66945811 66945811 C T CDH16 Missense_Mutation p.R594Q 0.15 tolerated(0.35) benign(0.071) TCGA-19-5956-01 16 67000703 67000703 C A CES3 Missense_Mutation p.P333T 0.15 deleterious(0.04) benign(0.003) TCGA-19-5956-01 16 67166352 67166352 C T C16orf70 Silent p.G93G 0.47 TCGA-19-5956-01 16 67220966 67220966 C A EXOC3L1 Missense_Mutation p.E372D 0.18 tolerated(0.19) benign(0.19) TCGA-19-5956-01 16 67221488 67221488 G A EXOC3L1 Missense_Mutation p.A227V 0.09 tolerated(1) benign(0.416) TCGA-19-5956-01 16 67316717 67316717 C T PLEKHG4 Missense_Mutation p.L489F 0.25 tolerated(0.21) benign(0.238) TCGA-19-5956-01 16 67405128 67405128 G T LRRC36 Missense_Mutation p.D493Y 0.11 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 16 67424195 67424195 C T TPPP3 Missense_Mutation p.R138H 0.50 tolerated(0.14) probably_damaging(0.999) TCGA-19-5956-01 16 67469938 67469938 G A HSD11B2 Missense_Mutation p.R186H 0.29 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 16 67580134 67580134 G A FAM65A Missense_Mutation p.G1208R 0.30 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 16 67681598 67681598 G T RLTPR Missense_Mutation p.S296I 0.44 deleterious(0) benign(0.066) TCGA-19-5956-01 16 67686392 67686392 G T RLTPR Missense_Mutation p.Q945H 0.47 tolerated(0.14) benign(0.116) TCGA-19-5956-01 16 67688681 67688681 C T RLTPR Missense_Mutation p.R1195W 0.11 deleterious(0) possibly_damaging(0.77) TCGA-19-5956-01 16 67691488 67691488 G A ACD 3'UTR 0.47 TCGA-19-5956-01 16 67910417 67910417 C T EDC4 Missense_Mutation p.T89I 0.39 tolerated(0.21) benign(0.086) TCGA-19-5956-01 16 67914549 67914549 C T EDC4 Silent p.S729S 0.41 TCGA-19-5956-01 16 68598172 68598172 G A ZFP90 Silent p.E494E 0.44 TCGA-19-5956-01 16 69373979 69373979 C A NIP7 Silent p.R43R 0.13 TCGA-19-5956-01 16 69687303 69687303 G T NFAT5 Missense_Mutation p.R326I 0.12 benign(0.358) TCGA-19-5956-01 16 69726620 69726620 G T NFAT5 Missense_Mutation p.E964D 0.55 benign(0.003) TCGA-19-5956-01 16 697471 697471 G A FAM195A Silent p.T79T 0.42 TCGA-19-5956-01 16 70512548 70512548 G A FUK Missense_Mutation p.R975H 0.14 tolerated(0.07) benign(0.022) TCGA-19-5956-01 16 70852321 70852321 G A HYDIN Missense_Mutation p.S4861L 0.38 benign(0) TCGA-19-5956-01 16 708579 708579 C T WDR90 Missense_Mutation p.R941C 0.23 tolerated(0.07) benign(0.001) TCGA-19-5956-01 16 70891771 70891771 G A HYDIN Silent p.I4044I 0.43 TCGA-19-5956-01 16 70900162 70900162 A C HYDIN Missense_Mutation p.I3794S 0.29 possibly_damaging(0.702) TCGA-19-5956-01 16 70908761 70908761 G A HYDIN Missense_Mutation p.A3540V 0.23 benign(0.002) TCGA-19-5956-01 16 70977742 70977742 G A HYDIN Silent p.L2214L 0.35 TCGA-19-5956-01 16 71212880 71212880 G T HYDIN Missense_Mutation p.T111N 0.17 probably_damaging(0.943) TCGA-19-5956-01 16 71411574 71411574 C T CALB2 Missense_Mutation p.A89V 0.23 tolerated(0.07) benign(0.057) TCGA-19-5956-01 16 71411591 71411591 G A CALB2 Missense_Mutation p.E95K 0.11 deleterious(0.02) benign(0.232) TCGA-19-5956-01 16 71417323 71417323 G A CALB2 Silent p.K151K 0.34 TCGA-19-5956-01 16 71482569 71482569 A G ZNF23 Silent p.C453C 0.12 TCGA-19-5956-01 16 71482693 71482693 C A ZNF23 Missense_Mutation p.R412I 0.18 deleterious(0) probably_damaging(0.957) TCGA-19-5956-01 16 71483652 71483652 G A ZNF23 Silent p.V92V 0.28 TCGA-19-5956-01 16 71509220 71509220 C A ZNF19 Missense_Mutation p.E410D 0.48 tolerated(0.08) benign(0.033) TCGA-19-5956-01 16 71606095 71606095 G T TAT Missense_Mutation p.L234M 0.46 deleterious(0.01) possibly_damaging(0.892) TCGA-19-5956-01 16 71712887 71712887 G A PHLPP2 Missense_Mutation p.L347F 0.42 deleterious(0) probably_damaging(1) TCGA-19-5956-01 16 71807163 71807163 C A AP1G1 Missense_Mutation p.E143D 0.07 deleterious(0.05) benign(0.13) TCGA-19-5956-01 16 720494 720494 C T RHOT2 Silent p.F159F 0.10 TCGA-19-5956-01 16 72055076 72055076 G A DHODH Missense_Mutation p.A191T 0.62 tolerated(0.11) benign(0.075) TCGA-19-5956-01 16 72132896 72132896 G A DHX38 Missense_Mutation p.D279N 0.43 tolerated(0.56) benign(0.001) TCGA-19-5956-01 16 72141255 72141255 G A DHX38 Missense_Mutation p.A873T 0.45 deleterious(0.02) possibly_damaging(0.511) TCGA-19-5956-01 16 72174353 72174353 G A PMFBP1 Silent p.L255L 0.12 TCGA-19-5956-01 16 72184630 72184630 G A PMFBP1 Silent p.I171I 0.52 TCGA-19-5956-01 16 72827754 72827754 G A ZFHX3 Missense_Mutation p.R2943W 0.50 unknown(0) TCGA-19-5956-01 16 72828462 72828462 C T ZFHX3 Missense_Mutation p.A2707T 0.27 unknown(0) TCGA-19-5956-01 16 72845844 72845844 G A ZFHX3 Missense_Mutation p.S1208L 0.29 benign(0.005) TCGA-19-5956-01 16 73127426 73127426 C T HCCAT5 RNA 0.65 TCGA-19-5956-01 16 739544 739547 TGAT - WDR24 Frame_Shift_Del p.I32Vfs*31 0.32 TCGA-19-5956-01 16 74526914 74526914 C T GLG1 Missense_Mutation p.R392Q 0.52 tolerated(0.06) possibly_damaging(0.699) TCGA-19-5956-01 16 74666502 74666502 T C RFWD3 Missense_Mutation p.Q499R 0.14 deleterious(0.01) probably_damaging(0.958) TCGA-19-5956-01 16 74706437 74706437 C T MLKL Splice_Site p.X461_splice 0.14 TCGA-19-5956-01 16 75148762 75148762 G A LDHD Silent p.N144N 0.26 TCGA-19-5956-01 16 75149163 75149163 C T LDHD Missense_Mutation p.R87H 0.29 tolerated(0.12) benign(0.003) TCGA-19-5956-01 16 75258614 75258614 C T CTRB1 Silent p.G214G 0.44 TCGA-19-5956-01 16 75258705 75258705 G A CTRB1 Missense_Mutation p.V245M 0.33 tolerated(0.1) probably_damaging(0.919) TCGA-19-5956-01 16 75563488 75563488 G A CHST5 Silent p.R265R 0.17 TCGA-19-5956-01 16 75642133 75642133 G A ADAT1 Silent p.S426S 0.18 TCGA-19-5956-01 16 77359929 77359929 C A ADAMTS18 Missense_Mutation p.Q622H 0.26 deleterious(0.02) probably_damaging(0.99) TCGA-19-5956-01 16 77401349 77401349 C T ADAMTS18 Missense_Mutation p.R256Q 0.24 deleterious(0.03) benign(0.087) TCGA-19-5956-01 16 77775490 77775490 G T NUDT7 Missense_Mutation p.L120F 0.12 deleterious(0.02) benign(0.151) TCGA-19-5956-01 16 783369 783369 A C NARFL Missense_Mutation p.L251R 0.12 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 16 78466547 78466547 G A WWOX Silent p.S318S 0.47 TCGA-19-5956-01 16 789824 789824 C T NARFL Intron 0.28 TCGA-19-5956-01 16 80654787 80654787 C T CDYL2 Missense_Mutation p.D294N 0.42 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 16 81053826 81053826 C A CENPN Missense_Mutation p.P159Q 0.49 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 16 81069793 81069793 C T ATMIN Silent p.V106V 0.44 TCGA-19-5956-01 16 81095482 81095482 C A C16orf46 Missense_Mutation p.A158S 0.08 tolerated(0.11) benign(0.01) TCGA-19-5956-01 16 81180912 81180912 C A PKD1L2 RNA 0.27 TCGA-19-5956-01 16 81236291 81236291 G A PKD1L2 Silent p.T319T 0.22 TCGA-19-5956-01 16 81249868 81249868 C T PKD1L2 Missense_Mutation p.A149T 0.27 tolerated(0.39) possibly_damaging(0.668) TCGA-19-5956-01 16 816430 816430 G A MSLN Silent p.T390T 0.46 TCGA-19-5956-01 16 81819777 81819777 C T PLCG2 Silent p.I61I 0.29 TCGA-19-5956-01 16 81927376 81927376 G A PLCG2 Missense_Mutation p.R350H 0.11 deleterious(0.02) possibly_damaging(0.9) TCGA-19-5956-01 16 81965233 81965233 G T PLCG2 Nonsense_Mutation p.E905* 0.12 TCGA-19-5956-01 16 82033697 82033697 G T SDR42E1 Silent p.A67A 0.12 TCGA-19-5956-01 16 83065650 83065650 C T CDH13 Missense_Mutation p.R112C 0.25 tolerated(0.1) possibly_damaging(0.514) TCGA-19-5956-01 16 84065563 84065563 T C SLC38A8 Missense_Mutation p.T181A 0.19 deleterious(0.02) benign(0.364) TCGA-19-5956-01 16 84135308 84135308 C A MBTPS1 Missense_Mutation p.K27N 0.16 tolerated_low_confidence(0.58) benign(0) TCGA-19-5956-01 16 84476154 84476154 C T ATP2C2 Silent p.N450N 0.24 TCGA-19-5956-01 16 84529421 84529421 C T TLDC1 Silent p.E84E 0.19 TCGA-19-5956-01 16 85015570 85015570 C A ZDHHC7 Nonsense_Mutation p.E153* 0.25 TCGA-19-5956-01 16 85024085 85024085 C T ZDHHC7 Missense_Mutation p.G47D 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 16 85954795 85954795 G A IRF8 Silent p.E396E 0.52 TCGA-19-5956-01 16 86613180 86613180 G A FOXL1 Missense_Mutation p.G284D 0.21 tolerated(0.28) benign(0) TCGA-19-5956-01 16 87367497 87367497 C A FBXO31 Missense_Mutation p.R464S 0.11 deleterious(0.02) possibly_damaging(0.67) TCGA-19-5956-01 16 87677952 87677952 C T JPH3 Silent p.R157R 0.14 TCGA-19-5956-01 16 88664672 88664672 C T ZC3H18 Missense_Mutation p.P259S 0.16 deleterious_low_confidence(0.01) unknown(0) TCGA-19-5956-01 16 88767718 88767718 C T RNF166 Silent p.E88E 0.24 TCGA-19-5956-01 16 88871065 88871065 C T CDT1 Missense_Mutation p.A114V 0.34 tolerated(0.31) benign(0.037) TCGA-19-5956-01 16 88876012 88876012 C A APRT 3'UTR 0.19 TCGA-19-5956-01 16 88901690 88901690 C T GALNS Missense_Mutation p.V277I 0.39 tolerated(1) benign(0.002) TCGA-19-5956-01 16 88951621 88951621 C T CBFA2T3 Missense_Mutation p.R317Q 0.15 deleterious(0.02) possibly_damaging(0.849) TCGA-19-5956-01 16 89345701 89345701 C T ANKRD11 Missense_Mutation p.A2417T 0.23 probably_damaging(0.979) TCGA-19-5956-01 16 89346654 89346654 T C ANKRD11 Missense_Mutation p.E2099G 0.16 possibly_damaging(0.784) TCGA-19-5956-01 16 89350552 89350552 C A ANKRD11 Nonsense_Mutation p.E800* 0.37 TCGA-19-5956-01 16 89715821 89715821 G A CHMP1A Missense_Mutation p.R64W 0.36 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 16 89782911 89782911 G T VPS9D1 Silent p.I130I 0.34 TCGA-19-5956-01 16 89782917 89782917 G A VPS9D1 Silent p.P128P 0.33 TCGA-19-5956-01 16 89877473 89877473 G T FANCA Missense_Mutation p.A97D 0.15 deleterious(0) possibly_damaging(0.665) TCGA-19-5956-01 16 8999170 8999170 C T USP7 Missense_Mutation p.D483N 0.12 deleterious(0) probably_damaging(0.945) TCGA-19-5956-01 16 90001935 90001935 G A TUBB3 Missense_Mutation p.R359H 0.06 tolerated_low_confidence(0.07) benign(0.015) TCGA-19-5956-01 16 90030715 90030715 C T DEF8 Silent p.C441C 0.36 TCGA-19-5956-01 16 90124832 90124832 G A PRDM7 Silent p.D448D 0.32 TCGA-19-5956-01 16 90160990 90160990 G A TUBB8P7 Intron 0.09 TCGA-19-5956-01 16 9984860 9984860 C A GRIN2A Missense_Mutation p.D369Y 0.23 deleterious(0) possibly_damaging(0.736) TCGA-19-5956-01 17 10247418 10247418 G T MYH13 Silent p.G531G 0.32 TCGA-19-5956-01 17 10303742 10303742 G T MYH8 Missense_Mutation p.L1234I 0.29 deleterious(0.01) benign(0.062) TCGA-19-5956-01 17 10304475 10304475 G A MYH8 Nonsense_Mutation p.R1048* 0.15 TCGA-19-5956-01 17 10346775 10346775 G A MYH4 Missense_Mutation p.R1913W 0.50 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 10366667 10366667 C A MYH4 Missense_Mutation p.D265Y 0.12 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 17 10398565 10398565 C A MYH1 Missense_Mutation p.D1747Y 0.26 deleterious(0) possibly_damaging(0.701) TCGA-19-5956-01 17 10399562 10399562 A G MYH1 Missense_Mutation p.L1654P 0.24 deleterious(0) possibly_damaging(0.853) TCGA-19-5956-01 17 10406154 10406154 C A MYH1 Missense_Mutation p.Q1004H 0.18 deleterious(0.01) benign(0.033) TCGA-19-5956-01 17 10412882 10412882 C T MYH1 Missense_Mutation p.E503K 0.06 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 17 10419986 10419986 G T MYH1 5'UTR 0.59 TCGA-19-5956-01 17 10438681 10438681 T C MYH2 Missense_Mutation p.E659G 0.14 deleterious(0) possibly_damaging(0.905) TCGA-19-5956-01 17 10443956 10443956 G T MYH2 Silent p.I321I 0.50 TCGA-19-5956-01 17 10448779 10448779 T A MYH2 Missense_Mutation p.K130M 0.31 deleterious(0) possibly_damaging(0.869) TCGA-19-5956-01 17 10542672 10542672 T G MYH3 Missense_Mutation p.E1015D 0.41 deleterious(0.01) probably_damaging(0.935) TCGA-19-5956-01 17 10555750 10555750 G T MYH3 Missense_Mutation p.S112Y 0.10 tolerated(0.25) possibly_damaging(0.609) TCGA-19-5956-01 17 10558307 10558307 G A MYH3 Silent p.I25I 0.50 TCGA-19-5956-01 17 10608289 10608289 C T ADPRM Missense_Mutation p.R16C 0.20 tolerated(0.18) benign(0.001) TCGA-19-5956-01 17 10608374 10608374 A G ADPRM Missense_Mutation p.Y44C 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 11572454 11572454 G A DNAH9 Silent p.P935P 0.47 TCGA-19-5956-01 17 11593736 11593736 C T DNAH9 Missense_Mutation p.R1533W 0.45 probably_damaging(0.999) TCGA-19-5956-01 17 11684387 11684387 G A DNAH9 Silent p.K2538K 0.38 TCGA-19-5956-01 17 12655810 12655810 G A MYOCD Missense_Mutation p.R402Q 0.48 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 12656506 12656506 C T MYOCD Missense_Mutation p.S634F 0.22 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 12846911 12846911 G T ARHGAP44 Nonsense_Mutation p.E220* 0.32 TCGA-19-5956-01 17 12897110 12897110 T C ELAC2 Missense_Mutation p.N716S 0.11 tolerated(0.11) benign(0.236) TCGA-19-5956-01 17 13980298 13980298 C T COX10 Missense_Mutation p.R142W 0.39 deleterious(0) possibly_damaging(0.462) TCGA-19-5956-01 17 1401314 1401314 G T INPP5K Missense_Mutation p.F293L 0.19 tolerated(0.99) benign(0.143) TCGA-19-5956-01 17 1401388 1401388 C T INPP5K Missense_Mutation p.D269N 0.43 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 14140107 14140107 C A CDRT15 Missense_Mutation p.R15M 0.17 deleterious_low_confidence(0) probably_damaging(0.983) TCGA-19-5956-01 17 1416846 1416846 T G INPP5K Missense_Mutation p.E54D 0.09 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 15517163 15517163 G A RP11-385D13.1 Silent p.L595L 0.28 TCGA-19-5956-01 17 1558703 1558703 C T PRPF8 Nonsense_Mutation p.W1976* 0.34 TCGA-19-5956-01 17 1577754 1577754 C T PRPF8 Missense_Mutation p.R1094H 0.20 deleterious(0) possibly_damaging(0.483) TCGA-19-5956-01 17 1578567 1578567 C T PRPF8 Missense_Mutation p.R980H 0.23 deleterious(0.02) benign(0.157) TCGA-19-5956-01 17 16040688 16040688 C A NCOR1 Missense_Mutation p.K482N 0.46 possibly_damaging(0.862) TCGA-19-5956-01 17 16089996 16089996 G A NCOR1 Silent p.F38F 0.09 TCGA-19-5956-01 17 1634184 1634184 G A WDR81 Missense_Mutation p.R1304H 0.51 tolerated(0.92) benign(0) TCGA-19-5956-01 17 16342471 16342471 C A TRPV2 3'Flank 0.27 TCGA-19-5956-01 17 16365616 16365616 C T FAM211A Missense_Mutation p.D111N 0.42 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 17 16723390 16723390 C T AC022596.6 RNA 0.33 TCGA-19-5956-01 17 16735622 16735622 C T KRT16P2 RNA 0.09 TCGA-19-5956-01 17 1684569 1684569 C A SMYD4 3'UTR 0.10 TCGA-19-5956-01 17 17700294 17700294 C T RAI1 Silent p.F1344F 0.22 TCGA-19-5956-01 17 18004863 18004863 G A DRG2 Missense_Mutation p.D230N 0.43 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 18029660 18029660 G A MYO15A Splice_Site p.X1253_splice 0.46 TCGA-19-5956-01 17 18052889 18052889 G A MYO15A Missense_Mutation p.D2403N 0.12 unknown(0) TCGA-19-5956-01 17 18205629 18205629 G A TOP3A Missense_Mutation p.R255W 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 18565422 18565422 G A ZNF286B Missense_Mutation p.P466L 0.52 deleterious(0.03) possibly_damaging(0.77) TCGA-19-5956-01 17 19247124 19247124 C T B9D1 Missense_Mutation p.A151T 0.28 deleterious(0.05) possibly_damaging(0.702) TCGA-19-5956-01 17 19286604 19286604 T G MAPK7 3'UTR 0.34 TCGA-19-5956-01 17 19843094 19843094 C T AKAP10 Silent p.Q418Q 0.15 TCGA-19-5956-01 17 19861774 19861774 C T AKAP10 Missense_Mutation p.E144K 0.46 deleterious(0.01) possibly_damaging(0.905) TCGA-19-5956-01 17 2200559 2200559 C T SMG6 Missense_Mutation p.R710H 0.21 tolerated(0.07) possibly_damaging(0.49) TCGA-19-5956-01 17 2227835 2227835 C T TSR1 Silent p.T733T 0.18 TCGA-19-5956-01 17 2238002 2238002 G A TSR1 Missense_Mutation p.R249W 0.18 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 17 2267464 2267464 G A SGSM2 Missense_Mutation p.E307K 0.56 tolerated(0.1) benign(0.101) TCGA-19-5956-01 17 2279013 2279013 C T SGSM2 Silent p.F776F 0.20 TCGA-19-5956-01 17 25621306 25621306 C T WSB1 5'UTR 0.25 TCGA-19-5956-01 17 25633924 25633924 C A WSB1 Intron 0.22 TCGA-19-5956-01 17 25639348 25639348 C T WSB1 Silent p.L407L 0.05 TCGA-19-5956-01 17 25749264 25749264 G T TBC1D3P5 RNA 0.48 TCGA-19-5956-01 17 25936281 25936281 C T KSR1 Silent p.V602V 0.50 TCGA-19-5956-01 17 2595711 2595711 G A CLUH Silent p.N1129N 0.29 TCGA-19-5956-01 17 26518101 26518101 C T NLK Nonsense_Mutation p.R431* 0.27 TCGA-19-5956-01 17 26817354 26817354 C T SLC13A2 Silent p.F87F 0.44 TCGA-19-5956-01 17 26945990 26945990 C A KIAA0100 Splice_Site p.X1881_splice 0.17 TCGA-19-5956-01 17 26962044 26962044 C A KIAA0100 Missense_Mutation p.G854V 0.25 tolerated(0.7) benign(0.419) TCGA-19-5956-01 17 27017169 27017169 C T SUPT6H Missense_Mutation p.R1138W 0.49 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 27026815 27026815 G A SUPT6H Missense_Mutation p.V1489M 0.21 deleterious(0) possibly_damaging(0.903) TCGA-19-5956-01 17 27086847 27086847 C T FAM222B Missense_Mutation p.E44K 0.31 deleterious(0) probably_damaging(0.956) TCGA-19-5956-01 17 27251307 27251307 T C PHF12 Missense_Mutation p.K112R 0.28 deleterious(0.05) possibly_damaging(0.841) TCGA-19-5956-01 17 27370332 27370332 G T PIPOX Missense_Mutation p.R30M 0.14 deleterious(0.02) possibly_damaging(0.825) TCGA-19-5956-01 17 27493500 27493500 G T MYO18A Silent p.T153T 0.23 TCGA-19-5956-01 17 27778665 27778665 A C TAOK1 Missense_Mutation p.E33D 0.23 deleterious(0) possibly_damaging(0.647) TCGA-19-5956-01 17 27935105 27935105 G A ANKRD13B Missense_Mutation p.V118M 0.13 deleterious(0.05) possibly_damaging(0.488) TCGA-19-5956-01 17 27936011 27936011 A C ANKRD13B Missense_Mutation p.Q188H 0.18 deleterious(0.04) possibly_damaging(0.876) TCGA-19-5956-01 17 28011644 28011644 G T SSH2 Missense_Mutation p.T112N 0.10 deleterious(0.01) probably_damaging(0.931) TCGA-19-5956-01 17 28378183 28378183 C A EFCAB5 Missense_Mutation p.F416L 0.46 deleterious(0) possibly_damaging(0.906) TCGA-19-5956-01 17 28419948 28419948 A G EFCAB5 Missense_Mutation p.I1439V 0.07 tolerated(0.16) benign(0.021) TCGA-19-5956-01 17 28505122 28505122 G A NSRP1 Missense_Mutation p.D69N 0.10 deleterious(0.02) possibly_damaging(0.764) TCGA-19-5956-01 17 28576151 28576151 A G BLMH Missense_Mutation p.Y418H 0.22 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 17 28618483 28618483 A T BLMH Missense_Mutation p.N19K 0.46 tolerated(0.79) benign(0.001) TCGA-19-5956-01 17 28754415 28754415 C A CPD Nonsense_Mutation p.S619* 0.41 TCGA-19-5956-01 17 28808270 28808270 C T GOSR1 Silent p.R47R 0.22 TCGA-19-5956-01 17 28937953 28937953 G T SMURF2P1 RNA 0.21 TCGA-19-5956-01 17 29311758 29311758 G A RNF135 Missense_Mutation p.E166K 0.50 tolerated(0.36) benign(0.023) TCGA-19-5956-01 17 29527462 29527462 G A NF1 Missense_Mutation p.R304Q 0.26 deleterious(0.01) benign(0.038) TCGA-19-5956-01 17 29528481 29528481 C A NF1 Nonsense_Mutation p.S413* 0.21 TCGA-19-5956-01 17 29560153 29560153 A G NF1 Silent p.E1210E 0.34 TCGA-19-5956-01 17 29562981 29562981 C T NF1 Nonsense_Mutation p.R1306* 0.18 TCGA-19-5956-01 17 30179113 30179113 C A COPRS 3'UTR 0.17 TCGA-19-5956-01 17 30321730 30321730 C A SUZ12 Missense_Mutation p.L529I 0.58 tolerated(0.19) possibly_damaging(0.557) TCGA-19-5956-01 17 30815484 30815484 C T CDK5R1 Silent p.F282F 0.28 TCGA-19-5956-01 17 3101592 3101592 C T OR1A2 Silent p.R260R 0.18 TCGA-19-5956-01 17 31082520 31082520 G A MYO1D Missense_Mutation p.S486F 0.15 deleterious(0) possibly_damaging(0.824) TCGA-19-5956-01 17 32483405 32483405 G A ASIC2 Silent p.F49F 0.29 TCGA-19-5956-01 17 32583309 32583309 G A CCL2 Missense_Mutation p.A49T 0.49 tolerated(0.17) benign(0.009) TCGA-19-5956-01 17 32614137 32614137 C T CCL11 Silent p.C33C 0.47 TCGA-19-5956-01 17 32956139 32956139 C T TMEM132E Silent p.H328H 0.48 TCGA-19-5956-01 17 32957073 32957073 C A TMEM132E Missense_Mutation p.A372D 0.25 deleterious(0) probably_damaging(0.962) TCGA-19-5956-01 17 32957159 32957159 G T TMEM132E Missense_Mutation p.D401Y 0.12 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 17 33266343 33266343 C T CCT6B Missense_Mutation p.E358K 0.41 deleterious(0.04) benign(0.269) TCGA-19-5956-01 17 33325265 33325265 A T LIG3 Missense_Mutation p.T647S 0.14 tolerated(0.56) benign(0.004) TCGA-19-5956-01 17 3336309 3336309 G T OR1E2 Missense_Mutation p.S276Y 0.20 deleterious(0.01) benign(0.415) TCGA-19-5956-01 17 3343484 3343484 T C SPATA22 Missense_Mutation p.D350G 0.47 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 17 3343531 3343531 C T SPATA22 Silent p.A334A 0.17 TCGA-19-5956-01 17 33501285 33501285 C T UNC45B Missense_Mutation p.R621W 0.40 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 17 33520341 33520341 C T SLC35G3 Missense_Mutation p.S329N 0.45 tolerated(0.22) possibly_damaging(0.745) TCGA-19-5956-01 17 33521273 33521273 C T SLC35G3 Silent p.P18P 0.50 TCGA-19-5956-01 17 33588028 33588028 T G SLFN5 Missense_Mutation p.L351V 0.14 tolerated(0.16) benign(0.001) TCGA-19-5956-01 17 33588078 33588078 G A SLFN5 Silent p.S367S 0.48 TCGA-19-5956-01 17 33588084 33588084 T G SLFN5 Missense_Mutation p.C369W 0.06 tolerated(0.18) benign(0.215) TCGA-19-5956-01 17 33592588 33592588 C A SLFN5 Missense_Mutation p.S786Y 0.22 tolerated(0.2) benign(0.004) TCGA-19-5956-01 17 33592900 33592900 C T SLFN5 Missense_Mutation p.S890F 0.21 deleterious(0) benign(0.114) TCGA-19-5956-01 17 3365840 3365840 C A SPATA22 Missense_Mutation p.R89I 0.20 tolerated(0.08) possibly_damaging(0.737) TCGA-19-5956-01 17 33679621 33679621 C A SLFN11 Missense_Mutation p.E820D 0.10 tolerated(0.29) benign(0.006) TCGA-19-5956-01 17 33679741 33679741 C A SLFN11 Missense_Mutation p.K780N 0.11 tolerated(0.32) benign(0.081) TCGA-19-5956-01 17 33690340 33690340 C T SLFN11 Missense_Mutation p.E163K 0.42 tolerated(0.85) benign(0.001) TCGA-19-5956-01 17 33768351 33768351 T C SLFN13 Missense_Mutation p.T653A 0.61 tolerated(0.25) benign(0.034) TCGA-19-5956-01 17 33769156 33769156 T C SLFN13 Missense_Mutation p.N450D 0.10 tolerated(0.39) benign(0.025) TCGA-19-5956-01 17 33771802 33771802 C A SLFN13 Nonsense_Mutation p.E300* 0.47 TCGA-19-5956-01 17 33772250 33772250 T C SLFN13 Silent p.A150A 0.11 TCGA-19-5956-01 17 33806615 33806615 C T SLFN12L Missense_Mutation p.R205K 0.28 tolerated(0.37) benign(0.111) TCGA-19-5956-01 17 33806821 33806821 C A SLFN12L Missense_Mutation p.Q136H 0.14 tolerated(0.12) benign(0.395) TCGA-19-5956-01 17 33849420 33849420 T C SLFN12L 5'UTR 0.39 TCGA-19-5956-01 17 34044339 34044339 C T AP2B1 Missense_Mutation p.R918C 0.27 deleterious(0.05) possibly_damaging(0.701) TCGA-19-5956-01 17 34062276 34062276 T G RASL10B Missense_Mutation p.L25V 0.16 tolerated(1) benign(0.013) TCGA-19-5956-01 17 34068114 34068114 C T RASL10B Silent p.R134R 0.50 TCGA-19-5956-01 17 34072237 34072237 C T GAS2L2 Missense_Mutation p.R760K 0.11 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 17 34076163 34076163 C T GAS2L2 Missense_Mutation p.R234H 0.17 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 17 34079528 34079528 G T GAS2L2 Silent p.V114V 0.07 TCGA-19-5956-01 17 34182052 34182052 G A C17orf66 3'UTR 0.48 TCGA-19-5956-01 17 34233569 34233569 C A AC015849.16 RNA 0.20 TCGA-19-5956-01 17 34264817 34264817 G A LYZL6 Silent p.Y81Y 0.50 TCGA-19-5956-01 17 3432140 3432140 C A TRPV3 Silent p.R464R 0.47 TCGA-19-5956-01 17 34871743 34871743 C A MYO19 Nonsense_Mutation p.E169* 0.25 TCGA-19-5956-01 17 34937965 34937965 G T GGNBP2 Missense_Mutation p.E404D 0.24 tolerated(0.44) benign(0.027) TCGA-19-5956-01 17 3513976 3513976 C T SHPK Missense_Mutation p.V439M 0.21 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 17 35295587 35295587 C T LHX1 Silent p.C31C 0.21 TCGA-19-5956-01 17 35388966 35388966 A G AATF Missense_Mutation p.M535V 0.49 tolerated(0.12) benign(0.261) TCGA-19-5956-01 17 3558548 3558548 C T CTNS Silent p.S121S 0.12 TCGA-19-5956-01 17 35597465 35597465 G A ACACA Silent p.I1016I 0.30 TCGA-19-5956-01 17 35614625 35614625 G A ACACA Missense_Mutation p.S609L 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-19-5956-01 17 35831204 35831204 C T TADA2A Silent p.S345S 0.20 TCGA-19-5956-01 17 35879168 35879168 T C SYNRG Missense_Mutation p.N1274D 0.09 tolerated(0.1) probably_damaging(0.996) TCGA-19-5956-01 17 35902135 35902135 T G SYNRG Missense_Mutation p.K1047N 0.22 tolerated(0.08) probably_damaging(0.998) TCGA-19-5956-01 17 35956287 35956287 C A SYNRG Nonsense_Mutation p.G75* 0.10 TCGA-19-5956-01 17 36482587 36482587 C A GPR179 Nonsense_Mutation p.E2289* 0.10 TCGA-19-5956-01 17 36482971 36482971 C T GPR179 Missense_Mutation p.G2161R 0.35 deleterious(0.01) benign(0.141) TCGA-19-5956-01 17 36484930 36484931 - T GPR179 Frame_Shift_Ins p.A1508Sfs*52 0.29 TCGA-19-5956-01 17 36955603 36955603 C A PIP4K2B Missense_Mutation p.K25N 0.16 deleterious(0.02) possibly_damaging(0.811) TCGA-19-5956-01 17 37119148 37119148 A C FBXO47 Missense_Mutation p.F44C 0.28 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 37186388 37186388 G T CTD-2206N4.2 5'Flank 0.23 TCGA-19-5956-01 17 37334284 37334284 G T CACNB1 Missense_Mutation p.L367I 0.12 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 17 37619057 37619057 G T CDK12 Missense_Mutation p.D245Y 0.07 unknown(0) TCGA-19-5956-01 17 37627509 37627509 C A CDK12 Missense_Mutation p.S475Y 0.22 benign(0.272) TCGA-19-5956-01 17 3765513 3765513 C T CAMKK1 3'Flank 0.31 TCGA-19-5956-01 17 37872844 37872844 A T ERBB2 Missense_Mutation p.T575S 0.14 tolerated(0.2) benign(0.09) TCGA-19-5956-01 17 37879617 37879617 C T ERBB2 Silent p.V664V 0.50 TCGA-19-5956-01 17 37879682 37879682 C T ERBB2 Missense_Mutation p.T686M 0.26 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 17 37881372 37881372 G T ERBB2 Missense_Mutation p.S855I 0.13 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 17 38032974 38032974 T C ZPBP2 Missense_Mutation p.V310A 0.24 deleterious(0) probably_damaging(0.964) TCGA-19-5956-01 17 38062152 38062152 G T GSDMB Silent p.V325V 0.19 TCGA-19-5956-01 17 3806857 3806857 A C P2RX1 Missense_Mutation p.F198C 0.18 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 17 38152461 38152461 C T PSMD3 Missense_Mutation p.A449V 0.42 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 17 38179413 38179413 C T MED24 Missense_Mutation p.V741I 0.19 tolerated(0.39) benign(0.025) TCGA-19-5956-01 17 38249513 38249513 G A THRA Missense_Mutation p.G451R 0.07 tolerated_low_confidence(0.16) benign(0.009) TCGA-19-5956-01 17 38282454 38282454 C T MSL1 5'UTR 0.26 TCGA-19-5956-01 17 38346763 38346763 C T RAPGEFL1 Missense_Mutation p.R192W 0.45 deleterious(0.01) possibly_damaging(0.878) TCGA-19-5956-01 17 38548327 38548327 G A TOP2A Silent p.V1375V 0.54 TCGA-19-5956-01 17 38555354 38555354 C A TOP2A Missense_Mutation p.V1076F 0.31 tolerated(0.07) possibly_damaging(0.579) TCGA-19-5956-01 17 38573057 38573057 T C TOP2A Missense_Mutation p.T38A 0.27 deleterious(0) benign(0.391) TCGA-19-5956-01 17 38856580 38856580 G T KRT24 Missense_Mutation p.A304D 0.10 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 17 38933540 38933540 G T KRT27 Nonsense_Mutation p.S402* 0.22 TCGA-19-5956-01 17 38938381 38938381 T G KRT27 Missense_Mutation p.K122T 0.26 tolerated(0.1) benign(0.044) TCGA-19-5956-01 17 38978744 38978744 A G KRT10 Missense_Mutation p.S32P 0.23 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 17 38990929 38990929 T C TMEM99 Missense_Mutation p.V54A 0.22 deleterious_low_confidence(0) benign(0.294) TCGA-19-5956-01 17 39084757 39084757 C A KRT23 Nonsense_Mutation p.E247* 0.06 TCGA-19-5956-01 17 39119972 39119972 G T KRT39 Silent p.I205I 0.11 TCGA-19-5956-01 17 39240701 39240701 C T KRTAP4-7 Silent p.I81I 0.43 TCGA-19-5956-01 17 39296243 39296243 C T KRTAP4-6 Missense_Mutation p.R166H 0.28 tolerated(0.09) unknown(0) TCGA-19-5956-01 17 39305504 39305504 G A KRTAP4-5 Silent p.R172R 0.24 TCGA-19-5956-01 17 39334437 39334437 C A KRTAP4-2 5'UTR 0.43 TCGA-19-5956-01 17 39382934 39382934 C T KRTAP9-2 Nonsense_Mutation p.Q10* 0.19 TCGA-19-5956-01 17 3953151 3953151 G T ZZEF1 Missense_Mutation p.L1956I 0.16 tolerated(0.15) possibly_damaging(0.67) TCGA-19-5956-01 17 39535381 39535381 G T KRT34 Missense_Mutation p.S350R 0.12 deleterious(0.01) probably_damaging(0.932) TCGA-19-5956-01 17 39538417 39538417 C A KRT34 Missense_Mutation p.G70C 0.40 deleterious(0.03) possibly_damaging(0.902) TCGA-19-5956-01 17 39567645 39567645 C T AC003958.2 RNA 0.25 TCGA-19-5956-01 17 39594519 39594519 C T KRT38 Missense_Mutation p.G356D 0.25 deleterious(0.01) probably_damaging(0.942) TCGA-19-5956-01 17 39616421 39616421 C T KRT32 Missense_Mutation p.V430I 0.16 tolerated(0.76) benign(0.001) TCGA-19-5956-01 17 39643229 39643229 C T KRT36 Missense_Mutation p.R394H 0.39 deleterious(0.02) benign(0.071) TCGA-19-5956-01 17 39658567 39658567 C T KRT13 Intron 0.11 TCGA-19-5956-01 17 3977583 3977583 G A ZZEF1 Silent p.N1182N 0.09 TCGA-19-5956-01 17 39779275 39779275 C T KRT17 Missense_Mutation p.A148T 0.08 tolerated(0.15) probably_damaging(0.938) TCGA-19-5956-01 17 3980252 3980252 C T ZZEF1 Silent p.A1007A 0.53 TCGA-19-5956-01 17 39880994 39880994 G A HAP1 Missense_Mutation p.P607S 0.41 deleterious_low_confidence(0.04) possibly_damaging(0.803) TCGA-19-5956-01 17 39963098 39963098 G A LEPREL4 Silent p.L366L 0.45 TCGA-19-5956-01 17 40086942 40086942 T G TTC25 RNA 0.40 TCGA-19-5956-01 17 40174451 40174451 C T NKIRAS2 Silent p.Y43Y 0.12 TCGA-19-5956-01 17 4017669 4017669 C A ZZEF1 Missense_Mutation p.D264Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 17 40331021 40331021 C T KCNH4 Missense_Mutation p.A34T 0.50 deleterious(0.02) benign(0.16) TCGA-19-5956-01 17 40354793 40354793 A G STAT5B Missense_Mutation p.I704T 0.24 deleterious(0.01) possibly_damaging(0.507) TCGA-19-5956-01 17 4060371 4060371 C A CYB5D2 Missense_Mutation p.L264I 0.23 deleterious_low_confidence(0.04) benign(0.033) TCGA-19-5956-01 17 40639316 40639316 C T ATP6V0A1 Silent p.C325C 0.16 TCGA-19-5956-01 17 40744157 40744157 C T FAM134C Missense_Mutation p.R88H 0.09 tolerated(0.06) benign(0.016) TCGA-19-5956-01 17 40832083 40832083 G T CCR10 Missense_Mutation p.L193I 0.29 tolerated(0.17) benign(0.336) TCGA-19-5956-01 17 40837046 40837046 G A CNTNAP1 Missense_Mutation p.R134H 0.44 tolerated(0.38) probably_damaging(0.991) TCGA-19-5956-01 17 40849631 40849631 C A CNTNAP1 Missense_Mutation p.L1210M 0.26 deleterious(0.04) probably_damaging(0.98) TCGA-19-5956-01 17 40864380 40864380 C T EZH1 Missense_Mutation p.R443Q 0.22 deleterious(0) benign(0.026) TCGA-19-5956-01 17 40914379 40914379 C T RAMP2 Missense_Mutation p.T57M 0.23 tolerated(0.38) benign(0.001) TCGA-19-5956-01 17 40925799 40925799 C T VPS25 Silent p.C34C 0.47 TCGA-19-5956-01 17 40936086 40936086 T G WNK4 Missense_Mutation p.V308G 0.45 deleterious(0) unknown(0) TCGA-19-5956-01 17 40956242 40956242 G T CNTD1 Splice_Site p.X82_splice 0.11 TCGA-19-5956-01 17 40963002 40963002 C T BECN1 Intron 0.59 TCGA-19-5956-01 17 41150717 41150717 C A RPL27 5'UTR 0.30 TCGA-19-5956-01 17 41234465 41234465 G A BRCA1 Missense_Mutation p.A1438V 0.18 tolerated(0.08) benign(0.242) TCGA-19-5956-01 17 41244451 41244451 C A BRCA1 Nonsense_Mutation p.E1033* 0.20 TCGA-19-5956-01 17 41246400 41246400 T C BRCA1 Missense_Mutation p.N383S 0.28 deleterious(0.02) probably_damaging(0.95) TCGA-19-5956-01 17 41847126 41847126 C T DUSP3 Missense_Mutation p.A137T 0.38 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 4186145 4186145 C A UBE2G1 Missense_Mutation p.E166D 0.10 tolerated(0.12) benign(0.003) TCGA-19-5956-01 17 42089514 42089514 G T TMEM101 Missense_Mutation p.L186M 0.14 deleterious(0.02) probably_damaging(0.934) TCGA-19-5956-01 17 42271598 42271598 C A ATXN7L3 3'UTR 0.44 TCGA-19-5956-01 17 42336668 42336668 G A SLC4A1 Silent p.L247L 0.46 TCGA-19-5956-01 17 42636394 42636394 G T FZD2 Missense_Mutation p.K446N 0.06 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 17 42815778 42815778 C T DBF4B Silent p.I233I 0.38 TCGA-19-5956-01 17 42980008 42980008 C T CCDC103 Silent p.S184S 0.49 TCGA-19-5956-01 17 43190276 43190276 C A PLCD3 Missense_Mutation p.D745Y 0.17 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 43342589 43342589 G A SPATA32 5'Flank 0.20 TCGA-19-5956-01 17 43473923 43473923 C T ARHGAP27 Silent p.A360A 0.17 TCGA-19-5956-01 17 4351570 4351570 T C SPNS3 Missense_Mutation p.C248R 0.11 tolerated(0.15) benign(0.028) TCGA-19-5956-01 17 43907878 43907878 C T CRHR1 Silent p.I246I 0.40 TCGA-19-5956-01 17 43923866 43923866 G A SPPL2C Missense_Mutation p.A532T 0.25 deleterious(0.04) benign(0.016) TCGA-19-5956-01 17 44068859 44068859 C T MAPT Missense_Mutation p.R472W 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 17 4439626 4439626 G A SPNS2 Silent p.A504A 0.50 TCGA-19-5956-01 17 4445143 4445143 C T MYBBP1A Missense_Mutation p.R1044K 0.32 tolerated(0.64) benign(0.012) TCGA-19-5956-01 17 4461772 4461772 C T GGT6 Silent p.P340P 0.45 TCGA-19-5956-01 17 4496438 4496438 C T SMTNL2 Silent p.V234V 0.46 TCGA-19-5956-01 17 45206816 45206816 C A CDC27 Missense_Mutation p.K707N 0.49 tolerated(0.11) possibly_damaging(0.747) TCGA-19-5956-01 17 45299758 45299758 C T MYL4 Missense_Mutation p.T167I 0.19 deleterious(0) benign(0.126) TCGA-19-5956-01 17 4534933 4534933 G T ALOX15 Missense_Mutation p.L651M 0.21 tolerated(0.11) probably_damaging(0.992) TCGA-19-5956-01 17 45363758 45363758 T C ITGB3 Silent p.F249F 0.25 TCGA-19-5956-01 17 45425307 45425307 T G EFCAB13 Silent p.V217V 0.19 TCGA-19-5956-01 17 45507298 45507298 C T EFCAB13 Missense_Mutation p.T870I 0.43 deleterious(0.04) possibly_damaging(0.77) TCGA-19-5956-01 17 45689907 45689907 G A NPEPPS Missense_Mutation p.R726H 0.49 deleterious(0.02) probably_damaging(0.922) TCGA-19-5956-01 17 45755715 45755715 A G KPNB1 Silent p.E763E 0.11 TCGA-19-5956-01 17 45819996 45819996 C T TBX21 Missense_Mutation p.S171L 0.50 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 17 45895641 45895641 A G OSBPL7 Missense_Mutation p.S198P 0.11 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 17 45901523 45901523 C T MRPL10 3'UTR 0.07 TCGA-19-5956-01 17 45915737 45915737 C A SCRN2 Missense_Mutation p.D340Y 0.12 deleterious(0) possibly_damaging(0.844) TCGA-19-5956-01 17 45924805 45924805 T C SP6 Missense_Mutation p.K331E 0.43 deleterious(0.01) probably_damaging(0.968) TCGA-19-5956-01 17 45994025 45994025 C T SP2 Silent p.S196S 0.45 TCGA-19-5956-01 17 45994082 45994082 C T SP2 Silent p.P215P 0.52 TCGA-19-5956-01 17 46000336 46000336 C A SP2 Silent p.I356I 0.37 TCGA-19-5956-01 17 46198655 46198655 G T SNX11 Nonsense_Mutation p.E200* 0.07 TCGA-19-5956-01 17 46198927 46198927 G T SNX11 3'UTR 0.23 TCGA-19-5956-01 17 4621005 4621005 G A ARRB2 Missense_Mutation p.R169Q 0.17 deleterious(0.04) probably_damaging(0.988) TCGA-19-5956-01 17 4641703 4641703 C T CXCL16 Missense_Mutation p.E120K 0.38 deleterious(0.02) possibly_damaging(0.908) TCGA-19-5956-01 17 4647942 4647942 G A ZMYND15 Missense_Mutation p.R569Q 0.11 tolerated(0.18) probably_damaging(0.999) TCGA-19-5956-01 17 46622124 46622124 C A HOXB2 Missense_Mutation p.E50D 0.27 deleterious(0) possibly_damaging(0.606) TCGA-19-5956-01 17 46628410 46628410 C T HOXB3 Silent p.A194A 0.20 TCGA-19-5956-01 17 46862449 46862449 C T TTLL6 Missense_Mutation p.A626T 0.17 tolerated(0.12) benign(0.023) TCGA-19-5956-01 17 4686291 4686291 G A TM4SF5 Missense_Mutation p.A180T 0.12 deleterious(0) probably_damaging(0.973) TCGA-19-5956-01 17 46937737 46937737 C T CALCOCO2 Missense_Mutation p.P381L 0.49 tolerated(0.08) benign(0.003) TCGA-19-5956-01 17 46971804 46971804 C A ATP5G1 Missense_Mutation p.S37Y 0.22 deleterious(0) possibly_damaging(0.779) TCGA-19-5956-01 17 46973129 46973129 T C ATP5G1 Nonstop_Mutation p.*137Rext*28 0.55 TCGA-19-5956-01 17 47004360 47004360 A G UBE2Z Missense_Mutation p.Y310C 0.48 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 17 47004377 47004377 C T UBE2Z Missense_Mutation p.R316C 0.27 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 17 47122386 47122386 C T IGF2BP1 Missense_Mutation p.R452C 0.51 deleterious(0.03) probably_damaging(0.975) TCGA-19-5956-01 17 4722455 4722455 G A PLD2 Silent p.S750S 0.11 TCGA-19-5956-01 17 47589341 47589341 C T NGFR Silent p.S303S 0.25 TCGA-19-5956-01 17 47875720 47875720 G A KAT7 Missense_Mutation p.R127Q 0.45 deleterious_low_confidence(0.01) possibly_damaging(0.463) TCGA-19-5956-01 17 47921514 47921514 G A TAC4 Silent p.G43G 0.44 TCGA-19-5956-01 17 4798699 4798699 G T MINK1 Missense_Mutation p.G1047V 0.23 deleterious(0) probably_damaging(0.947) TCGA-19-5956-01 17 48148815 48148815 C T ITGA3 Silent p.L298L 0.55 TCGA-19-5956-01 17 48226843 48226843 G A PPP1R9B Missense_Mutation p.P344S 0.44 tolerated(0.21) benign(0.002) TCGA-19-5956-01 17 48356644 48356644 G A TMEM92 Missense_Mutation p.R152K 0.23 deleterious(0.02) benign(0.437) TCGA-19-5956-01 17 4841673 4841673 C T SLC25A11 Missense_Mutation p.A200T 0.22 tolerated(0.07) benign(0.259) TCGA-19-5956-01 17 48460395 48460395 C T LRRC59 Missense_Mutation p.R293H 0.16 tolerated(0.13) benign(0) TCGA-19-5956-01 17 48546068 48546068 A G CHAD Missense_Mutation p.V36A 0.16 tolerated(1) probably_damaging(0.936) TCGA-19-5956-01 17 48601089 48601089 C A MYCBPAP Missense_Mutation p.L570I 0.13 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 48626287 48626287 C T SPATA20 Missense_Mutation p.R160W 0.45 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 17 48696333 48696333 G A CACNA1G Silent p.A1915A 0.46 TCGA-19-5956-01 17 48752794 48752794 G T ABCC3 Missense_Mutation p.D891Y 0.10 deleterious(0.02) possibly_damaging(0.823) TCGA-19-5956-01 17 4877727 4877727 C A CAMTA2 Missense_Mutation p.A680S 0.12 tolerated(0.33) probably_damaging(0.995) TCGA-19-5956-01 17 48941286 48941286 T G TOB1 Missense_Mutation p.E31D 0.25 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 17 49043623 49043623 T C SPAG9 3'UTR 0.22 TCGA-19-5956-01 17 4923960 4923960 G A KIF1C Missense_Mutation p.E642K 0.25 deleterious(0) possibly_damaging(0.636) TCGA-19-5956-01 17 49247295 49247295 G A NME1-NME2 Intron 0.19 TCGA-19-5956-01 17 4925531 4925531 C T KIF1C Missense_Mutation p.R719C 0.46 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-19-5956-01 17 4936827 4936827 C T SLC52A1 Silent p.L319L 0.19 TCGA-19-5956-01 17 4937920 4937920 C A SLC52A1 5'UTR 0.19 TCGA-19-5956-01 17 5009339 5009339 G T ZNF232 Missense_Mutation p.A372D 0.18 deleterious(0) possibly_damaging(0.705) TCGA-19-5956-01 17 5036264 5036264 G T USP6 Missense_Mutation p.E85D 0.09 tolerated_low_confidence(0.07) benign(0.217) TCGA-19-5956-01 17 5048091 5048091 T C USP6 Missense_Mutation p.V642A 0.49 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-19-5956-01 17 51900614 51900614 G T KIF2B Nonsense_Mutation p.E74* 0.07 TCGA-19-5956-01 17 51900853 51900853 C T KIF2B Silent p.I153I 0.24 TCGA-19-5956-01 17 51901193 51901193 G A KIF2B Missense_Mutation p.D267N 0.40 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 5238546 5238546 G T RABEP1 Missense_Mutation p.Q145H 0.18 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 5264542 5264542 G T RABEP1 Missense_Mutation p.D379Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 526881 526881 C T VPS53 Silent p.A336A 0.21 TCGA-19-5956-01 17 53045735 53045735 C A COX11 Missense_Mutation p.Q91H 0.24 deleterious(0) benign(0.003) TCGA-19-5956-01 17 53398154 53398154 C T HLF Missense_Mutation p.R268C 0.56 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 5418321 5418321 C T NLRP1 Missense_Mutation p.R1392Q 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 17 54558098 54558098 C A ANKFN1 Missense_Mutation p.D673E 0.12 tolerated(1) benign(0.004) TCGA-19-5956-01 17 54933898 54933898 C A DGKE Missense_Mutation p.S375Y 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 55187507 55187507 C T AKAP1 Silent p.I612I 0.37 TCGA-19-5956-01 17 55962846 55962846 G A CUEDC1 Missense_Mutation p.T27M 0.23 deleterious_low_confidence(0.04) benign(0.021) TCGA-19-5956-01 17 56274463 56274463 C T EPX Missense_Mutation p.S322L 0.21 deleterious(0) benign(0.042) TCGA-19-5956-01 17 56329718 56329718 G A LPO Missense_Mutation p.R319H 0.42 deleterious(0.01) possibly_damaging(0.595) TCGA-19-5956-01 17 56342203 56342203 G A LPO Missense_Mutation p.A463T 0.53 deleterious(0.04) probably_damaging(0.97) TCGA-19-5956-01 17 56350845 56350845 C T MPO Silent p.Q517Q 0.28 TCGA-19-5956-01 17 56356494 56356494 G T MPO Missense_Mutation p.Q254K 0.38 deleterious(0.03) probably_damaging(0.974) TCGA-19-5956-01 17 56386595 56386595 C A BZRAP1 Missense_Mutation p.E1346D 0.24 tolerated(0.14) benign(0.129) TCGA-19-5956-01 17 56620251 56620251 G A C17orf47 Missense_Mutation p.P433S 0.07 deleterious(0.04) probably_damaging(0.932) TCGA-19-5956-01 17 56621043 56621043 G A C17orf47 Nonsense_Mutation p.Q169* 0.25 TCGA-19-5956-01 17 56636915 56636915 T C TEX14 Missense_Mutation p.N1435S 0.52 tolerated(1) benign(0.004) TCGA-19-5956-01 17 56647802 56647802 A G TEX14 Missense_Mutation p.V1300A 0.43 tolerated(1) benign(0) TCGA-19-5956-01 17 56647835 56647835 G T TEX14 Missense_Mutation p.S1289Y 0.20 tolerated(0.69) benign(0.379) TCGA-19-5956-01 17 56679810 56679810 C T TEX14 Missense_Mutation p.R499Q 0.50 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 56780576 56780576 G T RAD51C Missense_Mutation p.E197D 0.23 tolerated(0.1) benign(0.063) TCGA-19-5956-01 17 57247111 57247111 A T PRR11 Intron 0.29 TCGA-19-5956-01 17 57274933 57274933 C T CTD-2510F5.6 Missense_Mutation p.R3W 0.46 deleterious_low_confidence(0.04) unknown(0) TCGA-19-5956-01 17 57288371 57288371 A C SMG8 Missense_Mutation p.N320T 0.13 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 17 57288373 57288373 C T SMG8 Nonsense_Mutation p.Q321* 0.52 TCGA-19-5956-01 17 57647959 57647959 G T DHX40 Nonsense_Mutation p.E121* 0.18 TCGA-19-5956-01 17 57651328 57651328 G A DHX40 Silent p.A258A 0.21 TCGA-19-5956-01 17 57775092 57775092 G A PTRH2 Missense_Mutation p.A83V 0.23 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 17 57814876 57814876 C T VMP1 Missense_Mutation p.T92M 0.48 tolerated(0.25) benign(0.017) TCGA-19-5956-01 17 57937579 57937579 G A TUBD1 3'UTR 0.24 TCGA-19-5956-01 17 58145022 58145022 A G HEATR6 Silent p.S337S 0.18 TCGA-19-5956-01 17 58504089 58504089 C T C17orf64 Missense_Mutation p.R114W 0.28 deleterious(0.04) probably_damaging(0.991) TCGA-19-5956-01 17 58678079 58678079 G A PPM1D Missense_Mutation p.A102T 0.65 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 58756862 58756862 G A BCAS3 Missense_Mutation p.R15H 0.13 tolerated(0.13) possibly_damaging(0.904) TCGA-19-5956-01 17 59489306 59489306 G A C17orf82 5'UTR 0.42 TCGA-19-5956-01 17 59557571 59557571 G T TBX4 Missense_Mutation p.Q304H 0.08 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 17 59760944 59760944 C A BRIP1 Nonsense_Mutation p.G1155* 0.07 TCGA-19-5956-01 17 59821877 59821877 C T BRIP1 Missense_Mutation p.V725I 0.47 tolerated(0.15) benign(0.02) TCGA-19-5956-01 17 5984041 5984041 C A WSCD1 Missense_Mutation p.F21L 0.18 tolerated(0.29) benign(0.009) TCGA-19-5956-01 17 59857686 59857686 G A BRIP1 Missense_Mutation p.S624L 0.32 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 59878709 59878709 C T BRIP1 Missense_Mutation p.A349T 0.48 deleterious(0.03) possibly_damaging(0.571) TCGA-19-5956-01 17 59886056 59886056 C T BRIP1 Silent p.S230S 0.17 TCGA-19-5956-01 17 59945302 59945302 C T INTS2 Missense_Mutation p.A1113T 0.48 tolerated(0.09) probably_damaging(0.999) TCGA-19-5956-01 17 59955308 59955308 C T INTS2 Missense_Mutation p.R807Q 0.53 deleterious(0.02) probably_damaging(0.983) TCGA-19-5956-01 17 59974863 59974863 G T INTS2 Silent p.I495I 0.33 TCGA-19-5956-01 17 60030378 60030378 G T MED13 Missense_Mutation p.S2022Y 0.20 deleterious(0.01) possibly_damaging(0.9) TCGA-19-5956-01 17 60042387 60042387 C T MED13 Silent p.P1608P 0.08 TCGA-19-5956-01 17 60042557 60042557 A G MED13 Missense_Mutation p.S1552P 0.27 tolerated(0.15) benign(0.064) TCGA-19-5956-01 17 60072698 60072698 T G MED13 Missense_Mutation p.K666Q 0.22 deleterious(0) possibly_damaging(0.538) TCGA-19-5956-01 17 60129955 60129955 C T MED13 Missense_Mutation p.R138H 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 60342255 60342255 G A TBC1D3P2 3'Flank 0.26 TCGA-19-5956-01 17 60518049 60518049 C T METTL2A Silent p.Y247Y 0.11 TCGA-19-5956-01 17 60753861 60753861 C A MRC2 Silent p.V601V 0.46 TCGA-19-5956-01 17 60802425 60802425 G A MARCH10 Missense_Mutation p.R660C 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 60814132 60814132 C T MARCH10 Missense_Mutation p.R366Q 0.10 tolerated(1) benign(0) TCGA-19-5956-01 17 61432241 61432241 G A TANC2 Missense_Mutation p.R617Q 0.11 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 17 61482600 61482600 G A TANC2 Missense_Mutation p.R1076H 0.30 tolerated(0.06) possibly_damaging(0.478) TCGA-19-5956-01 17 61493035 61493035 C T TANC2 Silent p.N1305N 0.42 TCGA-19-5956-01 17 61497576 61497576 C T TANC2 Silent p.F1411F 0.25 TCGA-19-5956-01 17 61514953 61514953 C T CYB561 Intron 0.64 TCGA-19-5956-01 17 61557836 61557836 G A ACE Missense_Mutation p.R265Q 0.19 tolerated(0.44) benign(0.02) TCGA-19-5956-01 17 61723400 61723400 G A MAP3K3 Missense_Mutation p.V76I 0.17 tolerated(0.2) benign(0.332) TCGA-19-5956-01 17 61889365 61889365 G A DDX42 Missense_Mutation p.R491H 0.49 tolerated(0.29) benign(0.018) TCGA-19-5956-01 17 61959166 61959166 G A GH2 5'UTR 0.49 TCGA-19-5956-01 17 61972438 61972438 C T CSH1 Missense_Mutation p.E200K 0.20 deleterious(0.04) benign(0.176) TCGA-19-5956-01 17 61972608 61972608 C T CSH1 Intron 0.10 TCGA-19-5956-01 17 61986985 61986985 T G CSHL1 3'Flank 0.23 TCGA-19-5956-01 17 61995399 61995399 C A GH1 Missense_Mutation p.R90M 0.26 tolerated(0.13) benign(0.037) TCGA-19-5956-01 17 62135222 62135222 G A ERN1 Silent p.T446T 0.10 TCGA-19-5956-01 17 62137897 62137897 G A ERN1 Missense_Mutation p.P380S 0.37 deleterious(0.04) probably_damaging(0.943) TCGA-19-5956-01 17 62230320 62230320 G A TEX2 Missense_Mutation p.P1049L 0.39 deleterious(0) possibly_damaging(0.889) TCGA-19-5956-01 17 62577108 62577108 G A SMURF2 Missense_Mutation p.P191S 0.54 tolerated(0.31) benign(0.02) TCGA-19-5956-01 17 62817908 62817908 C T RNU7-115P 3'Flank 0.14 TCGA-19-5956-01 17 63156360 63156360 A C RGS9 Missense_Mutation p.N72T 0.13 tolerated(0.06) possibly_damaging(0.543) TCGA-19-5956-01 17 6352709 6352709 C A FAM64A Missense_Mutation p.A223D 0.46 deleterious(0.03) probably_damaging(0.994) TCGA-19-5956-01 17 64024473 64024473 C T CEP112 Silent p.Q518Q 0.16 TCGA-19-5956-01 17 641253 641253 C T FAM57A Missense_Mutation p.A125V 0.11 tolerated(1) benign(0.016) TCGA-19-5956-01 17 64171262 64171262 G T CEP112 Missense_Mutation p.L124M 0.15 tolerated(0.85) benign(0.011) TCGA-19-5956-01 17 64213076 64213076 C T APOH Missense_Mutation p.C205Y 0.40 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 6441396 6441396 G T PITPNM3 Missense_Mutation p.P10H 0.22 deleterious(0.02) unknown(0) TCGA-19-5956-01 17 64783079 64783079 C A PRKCA Missense_Mutation p.S567Y 0.08 deleterious(0) possibly_damaging(0.895) TCGA-19-5956-01 17 65119131 65119131 T C HELZ Silent p.V1195V 0.08 TCGA-19-5956-01 17 6515343 6515343 C A KIAA0753 Missense_Mutation p.D481Y 0.12 deleterious(0.01) possibly_damaging(0.785) TCGA-19-5956-01 17 65199464 65199464 G T HELZ Missense_Mutation p.L115I 0.42 deleterious_low_confidence(0) probably_damaging(0.99) TCGA-19-5956-01 17 6526384 6526384 G T KIAA0753 Silent p.R308R 0.19 TCGA-19-5956-01 17 6545131 6545131 C T TXNDC17 Silent p.Y68Y 0.53 TCGA-19-5956-01 17 6546290 6546290 C T TXNDC17 Missense_Mutation p.S108F 0.42 deleterious(0.01) possibly_damaging(0.893) TCGA-19-5956-01 17 65628335 65628335 G A PITPNC1 Missense_Mutation p.R148H 0.11 tolerated(0.21) benign(0.399) TCGA-19-5956-01 17 65671602 65671602 G A PITPNC1 Missense_Mutation p.R209Q 0.09 deleterious(0.03) possibly_damaging(0.761) TCGA-19-5956-01 17 65688709 65688709 G A PITPNC1 Missense_Mutation p.R235Q 0.17 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 17 65890193 65890193 G T BPTF Nonsense_Mutation p.E819* 0.12 TCGA-19-5956-01 17 65942271 65942271 A C BPTF Missense_Mutation p.T2483P 0.11 possibly_damaging(0.731) TCGA-19-5956-01 17 6610477 6610477 T G SLC13A5 Splice_Site p.X35_splice 0.59 TCGA-19-5956-01 17 66246403 66246403 G T AMZ2 Missense_Mutation p.Q25H 0.21 tolerated(0.27) possibly_damaging(0.765) TCGA-19-5956-01 17 66265200 66265200 C T SLC16A6 3'UTR 0.10 TCGA-19-5956-01 17 66536067 66536067 G A FAM20A Silent p.F420F 0.21 TCGA-19-5956-01 17 66920996 66920996 G A ABCA8 Nonsense_Mutation p.R430* 0.10 TCGA-19-5956-01 17 66933159 66933159 G T ABCA8 Nonsense_Mutation p.Y133* 0.07 TCGA-19-5956-01 17 66972057 66972057 T C ABCA9 Silent p.%3D 0.21 TCGA-19-5956-01 17 67003930 67003931 - T ABCA9 Frame_Shift_Ins p.N1135Kfs*2 0.36 TCGA-19-5956-01 17 67031425 67031425 G A ABCA9 Missense_Mutation p.L364F 0.19 tolerated(0.24) benign(0.12) TCGA-19-5956-01 17 6704253 6704253 C T TEKT1 Missense_Mutation p.E288K 0.46 deleterious(0) probably_damaging(0.936) TCGA-19-5956-01 17 67133548 67133548 G A ABCA6 Silent p.L64L 0.45 TCGA-19-5956-01 17 67256535 67256535 G A ABCA5 Nonsense_Mutation p.R1195* 0.52 TCGA-19-5956-01 17 67266751 67266751 T C ABCA5 Intron 0.22 TCGA-19-5956-01 17 67266860 67266860 G T ABCA5 Missense_Mutation p.T975N 0.09 tolerated(0.08) probably_damaging(0.933) TCGA-19-5956-01 17 67293434 67293434 C A ABCA5 Missense_Mutation p.R445I 0.19 deleterious(0.01) possibly_damaging(0.786) TCGA-19-5956-01 17 6733538 6733538 C A TEKT1 Missense_Mutation p.R53I 0.22 deleterious(0.03) benign(0.043) TCGA-19-5956-01 17 6902633 6902633 C T ALOX12 Missense_Mutation p.R219C 0.56 tolerated(0.2) benign(0.022) TCGA-19-5956-01 17 6927841 6927841 C T BCL6B Nonsense_Mutation p.R175* 0.14 TCGA-19-5956-01 17 6978587 6978587 G A CLEC10A Intron 0.26 TCGA-19-5956-01 17 7012181 7012181 G A ASGR2 Nonsense_Mutation p.Q51* 0.18 TCGA-19-5956-01 17 71232048 71232048 T C C17orf80 Missense_Mutation p.S143P 0.22 tolerated(0.12) benign(0.003) TCGA-19-5956-01 17 7137510 7137510 C A DVL2 Missense_Mutation p.E24D 0.08 tolerated(0.21) benign(0.405) TCGA-19-5956-01 17 71420147 71420147 G T SDK2 Silent p.I556I 0.52 TCGA-19-5956-01 17 7190064 7190064 C A SLC2A4 3'UTR 0.24 TCGA-19-5956-01 17 7217628 7217628 C T GPS2 Missense_Mutation p.R100Q 0.36 deleterious(0.02) benign(0.202) TCGA-19-5956-01 17 7224742 7224742 C A NEURL4 Missense_Mutation p.D1046Y 0.09 tolerated(0.07) probably_damaging(0.988) TCGA-19-5956-01 17 7228967 7228967 G T NEURL4 Silent p.I453I 0.14 TCGA-19-5956-01 17 7229597 7229597 C T NEURL4 Missense_Mutation p.E424K 0.34 deleterious(0.01) probably_damaging(0.941) TCGA-19-5956-01 17 7229604 7229604 C A NEURL4 Missense_Mutation p.E421D 0.35 tolerated(0.08) probably_damaging(0.991) TCGA-19-5956-01 17 72356255 72356255 G A BTBD17 Missense_Mutation p.A72V 0.49 tolerated(0.95) benign(0.008) TCGA-19-5956-01 17 72473615 72473615 C A CD300A Missense_Mutation p.L192M 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 17 72519658 72519658 C T CD300LB Intron 0.28 TCGA-19-5956-01 17 725620 725620 C T NXN Silent p.E230E 0.16 TCGA-19-5956-01 17 72588241 72588241 C T C17orf77 Missense_Mutation p.A19V 0.49 tolerated_low_confidence(0.15) possibly_damaging(0.695) TCGA-19-5956-01 17 72877279 72877279 C T FADS6 Silent p.K215K 0.50 TCGA-19-5956-01 17 72878808 72878808 C T FADS6 Silent p.T130T 0.36 TCGA-19-5956-01 17 7287890 7287890 C T TNK1 Silent p.S318S 0.15 TCGA-19-5956-01 17 72923886 72923886 C A OTOP2 Silent p.I212I 0.32 TCGA-19-5956-01 17 72958080 72958080 C T HID1 Missense_Mutation p.E206K 0.28 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 17 73035036 73035036 C A ATP5H Missense_Mutation p.E159D 0.08 tolerated(0.06) probably_damaging(0.973) TCGA-19-5956-01 17 73094186 73094186 C A SLC16A5 Missense_Mutation p.L85M 0.26 deleterious(0.05) probably_damaging(0.948) TCGA-19-5956-01 17 73126931 73126931 T C NT5C Missense_Mutation p.Q123R 0.20 tolerated(0.08) benign(0.003) TCGA-19-5956-01 17 7319132 7319132 G A NLGN2 Missense_Mutation p.R447H 0.26 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 17 7339704 7339704 G A TMEM102 Missense_Mutation p.D136N 0.08 tolerated(0.05) benign(0.014) TCGA-19-5956-01 17 73488618 73488618 G A KIAA0195 Missense_Mutation p.E554K 0.25 deleterious(0.03) benign(0.071) TCGA-19-5956-01 17 73502954 73502954 G A CASKIN2 Nonsense_Mutation p.Q138* 0.19 TCGA-19-5956-01 17 7350401 7350401 C T CHRNB1 Silent p.V131V 0.20 TCGA-19-5956-01 17 73559130 73559130 C T LLGL2 Silent p.F188F 0.53 TCGA-19-5956-01 17 7366419 7366419 G A ZBTB4 Silent p.L628L 0.29 TCGA-19-5956-01 17 73888859 73888859 G A TRIM65 Missense_Mutation p.R163C 0.19 deleterious(0) benign(0.326) TCGA-19-5956-01 17 73997536 73997536 C T CDK3 Silent p.I10I 0.42 TCGA-19-5956-01 17 74401610 74401610 C A UBE2O Silent p.R154R 0.21 TCGA-19-5956-01 17 74475081 74475081 G A RHBDF2 Missense_Mutation p.P189L 0.24 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 17 7495857 7495857 C T FXR2 Missense_Mutation p.R597Q 0.08 tolerated_low_confidence(0.14) benign(0.404) TCGA-19-5956-01 17 75190934 75190934 T A SEC14L1 Missense_Mutation p.L217Q 0.21 tolerated(0.38) benign(0.006) TCGA-19-5956-01 17 75398682 75398682 G T SEPT9 Missense_Mutation p.Q206H 0.14 tolerated(0.14) benign(0.004) TCGA-19-5956-01 17 7576865 7576865 A C TP53 Nonsense_Mutation p.Y327* 0.40 TCGA-19-5956-01 17 7578275 7578275 G A TP53 Nonsense_Mutation p.Q192* 0.42 TCGA-19-5956-01 17 7604853 7604853 G A WRAP53 Missense_Mutation p.A270T 0.09 deleterious(0.01) benign(0.344) TCGA-19-5956-01 17 7636432 7636432 C T DNAH2 Missense_Mutation p.R143C 0.28 probably_damaging(0.953) TCGA-19-5956-01 17 76458959 76458959 G A DNAH17 Silent p.N3033N 0.26 TCGA-19-5956-01 17 76475577 76475577 G A DNAH17 Silent p.A2616A 0.08 TCGA-19-5956-01 17 76548857 76548857 G T DNAH17 Missense_Mutation p.L737I 0.06 benign(0.019) TCGA-19-5956-01 17 76566410 76566410 G T DNAH17 Silent p.I321I 0.22 TCGA-19-5956-01 17 76798436 76798436 C T USP36 Missense_Mutation p.A998T 0.45 deleterious(0.01) benign(0.031) TCGA-19-5956-01 17 76799590 76799590 A G USP36 Missense_Mutation p.V896A 0.28 tolerated_low_confidence(1) benign(0.013) TCGA-19-5956-01 17 76993229 76993229 G A CANT1 Missense_Mutation p.A159V 0.20 deleterious(0) possibly_damaging(0.525) TCGA-19-5956-01 17 77039941 77039941 G A C1QTNF1 Intron 0.35 TCGA-19-5956-01 17 7735966 7735966 C T DNAH2 Silent p.L4266L 0.42 TCGA-19-5956-01 17 7748989 7748989 C T KDM6B Silent p.S39S 0.11 TCGA-19-5956-01 17 7755838 7755838 A G KDM6B Silent p.E1498E 0.33 TCGA-19-5956-01 17 7756390 7756390 C T KDM6B Silent p.I1561I 0.56 TCGA-19-5956-01 17 7762084 7762084 C T CYB5D1 Missense_Mutation p.A133V 0.23 tolerated(0.26) benign(0.371) TCGA-19-5956-01 17 7798839 7798839 C A CHD3 Nonsense_Mutation p.C621* 0.14 TCGA-19-5956-01 17 78113541 78113541 G A EIF4A3 Missense_Mutation p.R172C 0.41 deleterious(0) possibly_damaging(0.826) TCGA-19-5956-01 17 78115631 78115631 C A EIF4A3 Nonsense_Mutation p.G87* 0.48 TCGA-19-5956-01 17 78166369 78166369 C T CARD14 Missense_Mutation p.A436V 0.10 deleterious(0) possibly_damaging(0.452) TCGA-19-5956-01 17 78172214 78172214 C T CARD14 Missense_Mutation p.R559W 0.47 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 17 78197080 78197080 G A SLC26A11 Missense_Mutation p.V153I 0.45 deleterious(0.03) benign(0.323) TCGA-19-5956-01 17 78316940 78316940 C A RNF213 Missense_Mutation p.L2000M 0.29 probably_damaging(0.999) TCGA-19-5956-01 17 78356814 78356814 G T RNF213 Nonsense_Mutation p.E4672* 0.09 TCGA-19-5956-01 17 78395664 78395664 G A ENDOV Missense_Mutation p.A89T 0.43 tolerated(0.12) benign(0.055) TCGA-19-5956-01 17 7851025 7851025 G T CNTROB Missense_Mutation p.K710N 0.18 tolerated_low_confidence(0.1) probably_damaging(0.999) TCGA-19-5956-01 17 7907271 7907271 T G GUCY2D Missense_Mutation p.F275V 0.38 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 17 79077742 79077742 C T BAIAP2 Silent p.N300N 0.10 TCGA-19-5956-01 17 79163468 79163468 C T AZI1 3'UTR 0.48 TCGA-19-5956-01 17 7918772 7918772 C T GUCY2D Missense_Mutation p.R966C 0.23 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 17 79219201 79219201 T G SLC38A10 3'UTR 0.19 TCGA-19-5956-01 17 79219929 79219929 C T SLC38A10 Silent p.K929K 0.27 TCGA-19-5956-01 17 79534490 79534490 A C NPLOC4 Missense_Mutation p.F507V 0.22 deleterious(0.02) possibly_damaging(0.645) TCGA-19-5956-01 17 79668136 79668136 C T HGS Missense_Mutation p.A733V 0.16 tolerated(0.15) benign(0.01) TCGA-19-5956-01 17 79673976 79673976 A G SLC25A10 Missense_Mutation p.H129R 0.21 deleterious_low_confidence(0) possibly_damaging(0.546) TCGA-19-5956-01 17 79804488 79804488 G A P4HB Silent p.I291I 0.48 TCGA-19-5956-01 17 79866974 79866974 G A PCYT2 Intron 0.16 TCGA-19-5956-01 17 79870419 79870419 G A SIRT7 Missense_Mutation p.S359L 0.10 tolerated(0.65) benign(0) TCGA-19-5956-01 17 7990735 7990735 G A ALOX12B Missense_Mutation p.A9V 0.09 tolerated(0.13) probably_damaging(0.999) TCGA-19-5956-01 17 80540627 80540627 G A FOXK2 Missense_Mutation p.R307H 0.30 deleterious(0.02) probably_damaging(0.993) TCGA-19-5956-01 17 80698649 80698649 A C FN3K Missense_Mutation p.K102Q 0.45 tolerated(0.42) benign(0.008) TCGA-19-5956-01 17 8135089 8135089 G T CTC1 Missense_Mutation p.F810L 0.18 tolerated(0.14) benign(0.163) TCGA-19-5956-01 17 8141521 8141521 G T CTC1 Missense_Mutation p.L159M 0.13 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 17 8159827 8159827 C T PFAS Intron 0.38 TCGA-19-5956-01 17 8222911 8222911 G T ARHGEF15 Missense_Mutation p.K788N 0.19 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 17 8424517 8424517 G A MYH10 Missense_Mutation p.R682C 0.07 probably_damaging(0.999) TCGA-19-5956-01 17 8424593 8424593 G T MYH10 Silent p.I656I 0.10 TCGA-19-5956-01 17 8455388 8455388 A C MYH10 Missense_Mutation p.S299A 0.46 benign(0) TCGA-19-5956-01 17 8701628 8701628 G T MFSD6L Missense_Mutation p.L271I 0.09 deleterious(0.02) possibly_damaging(0.789) TCGA-19-5956-01 17 8702005 8702005 G A MFSD6L Missense_Mutation p.T145I 0.18 tolerated(0.2) benign(0.173) TCGA-19-5956-01 17 8770951 8770951 C A PIK3R6 5'UTR 0.40 TCGA-19-5956-01 17 8790864 8790864 C T PIK3R5 Missense_Mutation p.D585N 0.28 tolerated(0.44) benign(0.035) TCGA-19-5956-01 17 8791669 8791669 G A PIK3R5 Silent p.L479L 0.17 TCGA-19-5956-01 17 9489220 9489220 C A WDR16 Silent p.V67V 0.15 TCGA-19-5956-01 17 9515631 9515631 T G WDR16 Missense_Mutation p.I287S 0.25 tolerated(0.21) benign(0.004) TCGA-19-5956-01 17 961232 961232 T G ABR Silent p.A453A 0.18 TCGA-19-5956-01 17 976884 976884 C A ABR Missense_Mutation p.R245L 0.16 deleterious(0) possibly_damaging(0.55) TCGA-19-5956-01 17 9774139 9774139 G T GLP2R Missense_Mutation p.D378Y 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 18 10696504 10696504 G A PIEZO2 Silent p.F2174F 0.49 TCGA-19-5956-01 18 11872297 11872297 C A GNAL Missense_Mutation p.F354L 0.49 deleterious(0) probably_damaging(0.95) TCGA-19-5956-01 18 11897266 11897266 C A MPPE1 5'UTR 0.37 TCGA-19-5956-01 18 11999164 11999164 C T IMPA2 Nonsense_Mutation p.R70* 0.07 TCGA-19-5956-01 18 12274184 12274184 C A CIDEA Missense_Mutation p.F141L 0.45 tolerated(0.31) benign(0.056) TCGA-19-5956-01 18 12308772 12308772 C T TUBB6 Silent p.N48N 0.17 TCGA-19-5956-01 18 12367278 12367278 C T AFG3L2 Silent p.Q132Q 0.07 TCGA-19-5956-01 18 12496087 12496087 A G SPIRE1 Silent p.I329I 0.46 TCGA-19-5956-01 18 12686268 12686268 C A CEP76 Missense_Mutation p.R372I 0.08 deleterious(0.01) benign(0.167) TCGA-19-5956-01 18 12724586 12724586 C A PSMG2 Missense_Mutation p.L224I 0.29 deleterious(0.01) possibly_damaging(0.817) TCGA-19-5956-01 18 12971157 12971157 G A SEH1L Missense_Mutation p.R176H 0.26 deleterious(0) benign(0.441) TCGA-19-5956-01 18 13068364 13068364 G T CEP192 Nonsense_Mutation p.E1589* 0.22 TCGA-19-5956-01 18 13731557 13731557 C A RNMT Missense_Mutation p.S14Y 0.28 deleterious_low_confidence(0) benign(0.276) TCGA-19-5956-01 18 13741530 13741530 C T RNMT Missense_Mutation p.R272C 0.35 tolerated(0.11) benign(0.009) TCGA-19-5956-01 18 13826089 13826089 G A MC5R Missense_Mutation p.A109T 0.48 tolerated(0.63) benign(0.015) TCGA-19-5956-01 18 13884624 13884624 C A MC2R Nonstop_Mutation p.*298Yext*3 0.36 TCGA-19-5956-01 18 13885210 13885210 T C MC2R Missense_Mutation p.D103G 0.08 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 18 14478498 14478498 A C CXADRP3 RNA 0.39 TCGA-19-5956-01 18 14478656 14478656 G T CXADRP3 RNA 0.53 TCGA-19-5956-01 18 14511936 14511936 C A POTEC Missense_Mutation p.Q530H 0.20 deleterious_low_confidence(0.04) benign(0.135) TCGA-19-5956-01 18 14542921 14542921 G A POTEC Silent p.S75S 0.22 TCGA-19-5956-01 18 14784473 14784473 A C ANKRD30B Missense_Mutation p.E537D 0.38 tolerated(0.53) possibly_damaging(0.465) TCGA-19-5956-01 18 180305 180305 C T USP14 Missense_Mutation p.R124C 0.18 deleterious(0) probably_damaging(0.954) TCGA-19-5956-01 18 19348596 19348596 G T MIB1 Missense_Mutation p.E138D 0.44 tolerated(0.11) benign(0.028) TCGA-19-5956-01 18 19995769 19995769 C A CTAGE1 Missense_Mutation p.R669I 0.09 deleterious(0) possibly_damaging(0.851) TCGA-19-5956-01 18 21112225 21112225 T G NPC1 Missense_Mutation p.S1260R 0.46 tolerated(0.69) benign(0.001) TCGA-19-5956-01 18 21395518 21395518 C T LAMA3 Silent p.S676S 0.60 TCGA-19-5956-01 18 21441699 21441699 G A LAMA3 Silent p.A1504A 0.40 TCGA-19-5956-01 18 21483970 21483970 G T LAMA3 Missense_Mutation p.R2131I 0.18 benign(0.013) TCGA-19-5956-01 18 21519242 21519242 C A LAMA3 Missense_Mutation p.A2973D 0.49 benign(0.01) TCGA-19-5956-01 18 21705398 21705398 G A TTC39C Missense_Mutation p.R435Q 0.45 tolerated(0.18) benign(0.041) TCGA-19-5956-01 18 21747370 21747370 C A OSBPL1A Missense_Mutation p.D820Y 0.45 deleterious(0.01) possibly_damaging(0.796) TCGA-19-5956-01 18 21891958 21891958 T G OSBPL1A Missense_Mutation p.K361T 0.09 deleterious(0.02) benign(0.003) TCGA-19-5956-01 18 21897159 21897159 T G OSBPL1A Missense_Mutation p.N275T 0.22 tolerated(0.12) benign(0.06) TCGA-19-5956-01 18 22805797 22805797 G T ZNF521 Silent p.I695I 0.39 TCGA-19-5956-01 18 22805911 22805911 G A ZNF521 Silent p.L657L 0.50 TCGA-19-5956-01 18 23772363 23772363 G T PSMA8 Missense_Mutation p.K253N 0.39 tolerated(0.61) unknown(0) TCGA-19-5956-01 18 23854787 23854787 C T TAF4B Missense_Mutation p.P253L 0.46 tolerated(0.06) possibly_damaging(0.449) TCGA-19-5956-01 18 24035804 24035804 T C KCTD1 Missense_Mutation p.D226G 0.16 deleterious(0.04) benign(0.011) TCGA-19-5956-01 18 24436185 24436185 G T AQP4 Missense_Mutation p.S321Y 0.45 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-19-5956-01 18 24497023 24497023 G A CHST9 Nonsense_Mutation p.R178* 0.24 TCGA-19-5956-01 18 24604098 24604098 G A CHST9 Missense_Mutation p.R62W 0.38 tolerated_low_confidence(0.13) benign(0.099) TCGA-19-5956-01 18 25570181 25570181 T A CDH2 Missense_Mutation p.E493V 0.45 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 18 2567304 2567304 A G METTL4 5'UTR 0.26 TCGA-19-5956-01 18 2750448 2750448 C T SMCHD1 Missense_Mutation p.R1370C 0.54 tolerated(0.22) benign(0.006) TCGA-19-5956-01 18 2784502 2784502 C T SMCHD1 Nonsense_Mutation p.R1868* 0.24 TCGA-19-5956-01 18 28588264 28588264 G A DSC3 Silent p.D497D 0.17 TCGA-19-5956-01 18 28598156 28598156 C A DSC3 Missense_Mutation p.D382Y 0.20 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 18 28609589 28609589 C T DSC3 Silent p.S120S 0.25 TCGA-19-5956-01 18 28647952 28647952 C T DSC2 3'UTR 0.21 TCGA-19-5956-01 18 28666645 28666645 C T DSC2 Missense_Mutation p.R279H 0.07 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 18 28711559 28711559 C T DSC1 Missense_Mutation p.E829K 0.56 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 18 28714094 28714094 C A DSC1 Splice_Site p.X626_splice 0.35 TCGA-19-5956-01 18 28736036 28736036 C T DSC1 Silent p.S147S 0.08 TCGA-19-5956-01 18 2891614 2891614 C A EMILIN2 Missense_Mutation p.L497M 0.23 tolerated(0.19) probably_damaging(0.999) TCGA-19-5956-01 18 2892184 2892184 G A EMILIN2 Missense_Mutation p.A687T 0.45 tolerated(1) benign(0.001) TCGA-19-5956-01 18 28972226 28972226 C A DSG4 Missense_Mutation p.L310I 0.07 tolerated(0.7) benign(0.144) TCGA-19-5956-01 18 28993562 28993562 C A DSG4 3'UTR 0.14 TCGA-19-5956-01 18 2909768 2909768 C A EMILIN2 Silent p.L925L 0.15 TCGA-19-5956-01 18 29122760 29122760 C A DSG2 Missense_Mutation p.A760D 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-19-5956-01 18 2920852 2920852 C T LPIN2 Missense_Mutation p.V824I 0.39 tolerated(0.05) probably_damaging(0.939) TCGA-19-5956-01 18 29211088 29211088 G A B4GALT6 Missense_Mutation p.R204C 0.43 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 18 2926769 2926769 G A LPIN2 Missense_Mutation p.P582L 0.40 tolerated(0.3) benign(0.001) TCGA-19-5956-01 18 2931362 2931362 C T LPIN2 Missense_Mutation p.A450T 0.14 tolerated(0.15) probably_damaging(0.995) TCGA-19-5956-01 18 29454463 29454463 C A TRAPPC8 Nonsense_Mutation p.E645* 0.42 TCGA-19-5956-01 18 29487455 29487455 C A TRAPPC8 Missense_Mutation p.D453Y 0.13 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 18 30093133 30093133 G T WBP11P1 RNA 0.25 TCGA-19-5956-01 18 30093303 30093303 G T WBP11P1 RNA 0.22 TCGA-19-5956-01 18 30267170 30267170 G A KLHL14 Nonsense_Mutation p.R396* 0.20 TCGA-19-5956-01 18 30350557 30350557 C T KLHL14 5'UTR 0.22 TCGA-19-5956-01 18 31325967 31325967 C A ASXL3 Missense_Mutation p.S2052Y 0.38 benign(0.326) TCGA-19-5956-01 18 3151782 3151782 G A MYOM1 Nonsense_Mutation p.R585* 0.09 TCGA-19-5956-01 18 31523138 31523138 C T NOL4 Missense_Mutation p.R478Q 0.39 deleterious(0) probably_damaging(0.965) TCGA-19-5956-01 18 31537403 31537403 C A NOL4 Missense_Mutation p.A439S 0.40 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 18 32391988 32391988 C T DTNA Missense_Mutation p.R172W 0.19 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 18 32712042 32712042 A C MAPRE2 Missense_Mutation p.D266A 0.14 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 18 32720301 32720301 G A MAPRE2 Missense_Mutation p.E318K 0.30 tolerated(0.13) unknown(0) TCGA-19-5956-01 18 32886892 32886892 G A ZNF271 RNA 0.27 TCGA-19-5956-01 18 32949540 32949540 T C ZNF396 Missense_Mutation p.N216S 0.25 tolerated(0.31) possibly_damaging(0.801) TCGA-19-5956-01 18 33606883 33606883 C A RPRD1A Nonsense_Mutation p.E257* 0.35 TCGA-19-5956-01 18 33739795 33739795 T C ELP2 Splice_Site p.X609_splice 0.21 TCGA-19-5956-01 18 33795863 33795863 G A MOCOS Missense_Mutation p.V574I 0.50 tolerated(0.52) benign(0.003) TCGA-19-5956-01 18 33831230 33831230 G T MOCOS Missense_Mutation p.K716N 0.43 tolerated(0.08) benign(0.03) TCGA-19-5956-01 18 34267134 34267134 G T FHOD3 Nonsense_Mutation p.E497* 0.15 TCGA-19-5956-01 18 34740283 34740283 G A KIAA1328 Silent p.S451S 0.49 TCGA-19-5956-01 18 3879691 3879691 C T DLGAP1 Silent p.T126T 0.23 TCGA-19-5956-01 18 39570433 39570433 G A PIK3C3 Missense_Mutation p.R210Q 0.23 tolerated(0.14) possibly_damaging(0.782) TCGA-19-5956-01 18 39661148 39661148 G A PIK3C3 3'UTR 0.32 TCGA-19-5956-01 18 40853905 40853905 G T SYT4 Nonsense_Mutation p.Y163* 0.21 TCGA-19-5956-01 18 40854127 40854127 C T SYT4 Silent p.K89K 0.18 TCGA-19-5956-01 18 42531950 42531950 C T SETBP1 Missense_Mutation p.A882V 0.31 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 18 43205737 43205737 T A SLC14A2 Missense_Mutation p.H80Q 0.50 tolerated(0.37) benign(0.028) TCGA-19-5956-01 18 43223999 43223999 T G SLC14A2 Missense_Mutation p.F409V 0.22 deleterious(0.02) possibly_damaging(0.774) TCGA-19-5956-01 18 43496060 43496060 G T EPG5 Missense_Mutation p.L1166I 0.14 deleterious(0.03) probably_damaging(0.953) TCGA-19-5956-01 18 43532597 43532597 C A EPG5 Missense_Mutation p.D341Y 0.25 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 18 43534917 43534917 G T EPG5 Missense_Mutation p.L151I 0.09 tolerated_low_confidence(0.58) benign(0.001) TCGA-19-5956-01 18 43534931 43534931 G A EPG5 Missense_Mutation p.S146L 0.12 tolerated_low_confidence(0.76) benign(0) TCGA-19-5956-01 18 43535237 43535237 C A EPG5 Missense_Mutation p.R44I 0.32 tolerated_low_confidence(0.15) benign(0.147) TCGA-19-5956-01 18 43666410 43666410 G A ATP5A1 Silent p.N409N 0.11 TCGA-19-5956-01 18 43820118 43820118 C T C18orf25 Missense_Mutation p.T288I 0.16 benign(0.193) TCGA-19-5956-01 18 44260332 44260332 G A ST8SIA5 Silent p.F268F 0.56 TCGA-19-5956-01 18 44416429 44416429 G T PIAS2 Missense_Mutation p.L365M 0.46 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 18 44561050 44561050 C A TCEB3B Missense_Mutation p.G196C 0.16 deleterious(0.02) probably_damaging(0.986) TCGA-19-5956-01 18 44639352 44639352 C A HDHD2 Missense_Mutation p.K224N 0.06 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 18 45395775 45395775 C T SMAD2 Missense_Mutation p.R120Q 0.21 deleterious(0.04) benign(0.248) TCGA-19-5956-01 18 46284697 46284697 C T CTIF Missense_Mutation p.P331L 0.09 deleterious_low_confidence(0.02) benign(0.096) TCGA-19-5956-01 18 46623799 46623799 G A DYM Silent p.V611V 0.23 TCGA-19-5956-01 18 47323965 47323965 C A ACAA2 Splice_Site p.X62_splice 0.17 TCGA-19-5956-01 18 47405348 47405348 G A MYO5B Silent p.Y1081Y 0.21 TCGA-19-5956-01 18 47800560 47800560 G A MBD1 Missense_Mutation p.A381V 0.37 deleterious(0.02) benign(0.347) TCGA-19-5956-01 18 47800705 47800705 G A MBD1 Missense_Mutation p.R333W 0.17 deleterious(0) probably_damaging(1) TCGA-19-5956-01 18 47802758 47802758 C A MBD1 Missense_Mutation p.R169I 0.23 deleterious(0.01) probably_damaging(0.929) TCGA-19-5956-01 18 47810908 47810908 G A CXXC1 Missense_Mutation p.R353W 0.36 deleterious(0) possibly_damaging(0.802) TCGA-19-5956-01 18 47908550 47908550 G T SKA1 Nonsense_Mutation p.E89* 0.10 TCGA-19-5956-01 18 48331608 48331608 G A MRO Silent p.T129T 0.27 TCGA-19-5956-01 18 48584807 48584807 G A SMAD4 Silent p.P295P 0.53 TCGA-19-5956-01 18 48703578 48703578 C A MEX3C Missense_Mutation p.G375W 0.21 deleterious(0) probably_damaging(1) TCGA-19-5956-01 18 50832004 50832004 C T DCC Silent p.T656T 0.47 TCGA-19-5956-01 18 50929209 50929209 C T DCC Missense_Mutation p.R961C 0.46 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 18 51692476 51692476 T G MBD2 Missense_Mutation p.K301Q 0.12 tolerated(0.06) possibly_damaging(0.74) TCGA-19-5956-01 18 51729453 51729453 C T MBD2 Intron 0.06 TCGA-19-5956-01 18 51820857 51820857 C T POLI 3'UTR 0.45 TCGA-19-5956-01 18 52556638 52556638 C A RAB27B Silent p.I217I 0.17 TCGA-19-5956-01 18 54285270 54285270 C A TXNL1 Missense_Mutation p.D153Y 0.15 deleterious(0.01) possibly_damaging(0.774) TCGA-19-5956-01 18 54349961 54349961 G A WDR7 Missense_Mutation p.G133R 0.22 deleterious(0) probably_damaging(0.938) TCGA-19-5956-01 18 54814862 54814862 G A BOD1L2 Missense_Mutation p.V107I 0.24 tolerated(0.45) benign(0.123) TCGA-19-5956-01 18 55021708 55021708 G T ST8SIA3 Missense_Mutation p.E85D 0.21 benign(0) TCGA-19-5956-01 18 55024347 55024347 G T ST8SIA3 Missense_Mutation p.G169V 0.09 probably_damaging(1) TCGA-19-5956-01 18 55287881 55287881 C T NARS Missense_Mutation p.E5K 0.39 tolerated(0.61) benign(0.009) TCGA-19-5956-01 18 55319845 55319845 C T ATP8B1 Silent p.S1044S 0.06 TCGA-19-5956-01 18 55362490 55362490 T G ATP8B1 Missense_Mutation p.S285R 0.10 tolerated(0.38) benign(0.004) TCGA-19-5956-01 18 56056383 56056383 G A NEDD4L Missense_Mutation p.G872S 0.15 tolerated(0.05) possibly_damaging(0.467) TCGA-19-5956-01 18 56063406 56063406 C T NEDD4L Missense_Mutation p.R945C 0.45 deleterious(0) probably_damaging(1) TCGA-19-5956-01 18 56182272 56182272 G T ALPK2 Silent p.I1994I 0.32 TCGA-19-5956-01 18 56202636 56202636 G A ALPK2 Missense_Mutation p.R1595C 0.18 tolerated(0.69) benign(0) TCGA-19-5956-01 18 56204373 56204373 C T ALPK2 Missense_Mutation p.E1016K 0.56 tolerated(1) benign(0) TCGA-19-5956-01 18 56376672 56376672 C A MALT1 Missense_Mutation p.L238M 0.16 deleterious(0.01) possibly_damaging(0.874) TCGA-19-5956-01 18 56409144 56409144 C T MALT1 Nonsense_Mutation p.R551* 0.12 TCGA-19-5956-01 18 56606781 56606781 C T ZNF532 Missense_Mutation p.A878V 0.16 deleterious(0.05) probably_damaging(0.943) TCGA-19-5956-01 18 58039459 58039459 C T MC4R Missense_Mutation p.E42K 0.08 tolerated(0.09) benign(0.094) TCGA-19-5956-01 18 60036104 60036104 C T TNFRSF11A Silent p.Y318Y 0.20 TCGA-19-5956-01 18 60036143 60036143 C T TNFRSF11A Silent p.S331S 0.38 TCGA-19-5956-01 18 60036594 60036594 G T TNFRSF11A Nonsense_Mutation p.E482* 0.17 TCGA-19-5956-01 18 60243764 60243764 C T ZCCHC2 Silent p.Y1163Y 0.53 TCGA-19-5956-01 18 60506057 60506057 G T PHLPP1 Missense_Mutation p.S605I 0.45 deleterious(0.02) probably_damaging(0.935) TCGA-19-5956-01 18 60562283 60562283 T G PHLPP1 Missense_Mutation p.H702Q 0.21 tolerated(0.5) benign(0.155) TCGA-19-5956-01 18 60563168 60563168 A G PHLPP1 Missense_Mutation p.M790V 0.07 deleterious(0) benign(0.058) TCGA-19-5956-01 18 61166502 61166502 G A SERPINB5 Silent p.E239E 0.20 TCGA-19-5956-01 18 61232822 61232822 G T SERPINB12 Missense_Mutation p.D264Y 0.10 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 18 61379812 61379812 G T SERPINB11 Missense_Mutation p.G81V 0.08 deleterious(0) probably_damaging(0.964) TCGA-19-5956-01 18 61390677 61390677 G T SERPINB11 3'UTR 0.08 TCGA-19-5956-01 18 61564406 61564406 G T SERPINB2 Nonsense_Mutation p.E124* 0.20 TCGA-19-5956-01 18 61570132 61570132 C T SERPINB2 Intron 0.63 TCGA-19-5956-01 18 61597331 61597331 G T SERPINB10 Missense_Mutation p.M181I 0.17 deleterious(0) benign(0.438) TCGA-19-5956-01 18 61621641 61621641 G T HMSD Splice_Site p.X25_splice 0.38 TCGA-19-5956-01 18 61627491 61627491 G A HMSD Missense_Mutation p.V108I 0.66 tolerated(0.07) possibly_damaging(0.651) TCGA-19-5956-01 18 61647138 61647138 G T SERPINB8 Missense_Mutation p.R91I 0.61 deleterious(0) probably_damaging(0.983) TCGA-19-5956-01 18 61654141 61654141 G T SERPINB8 Missense_Mutation p.A252S 0.09 tolerated(0.19) benign(0.057) TCGA-19-5956-01 18 64218402 64218402 G A CDH19 Missense_Mutation p.A235V 0.55 deleterious(0) probably_damaging(0.957) TCGA-19-5956-01 18 65181220 65181220 T C DSEL Missense_Mutation p.E219G 0.19 tolerated(0.06) possibly_damaging(0.813) TCGA-19-5956-01 18 65181681 65181681 C T DSEL Silent p.K65K 0.08 TCGA-19-5956-01 18 672816 672816 G T ENOSF1 3'Flank 0.31 TCGA-19-5956-01 18 672946 672946 G A TYMS Silent p.Q297Q 0.24 TCGA-19-5956-01 18 67727173 67727173 C T RTTN Missense_Mutation p.C1618Y 0.26 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 18 67992266 67992266 C T SOCS6 Missense_Mutation p.P121L 0.42 deleterious_low_confidence(0.01) benign(0.387) TCGA-19-5956-01 18 67993243 67993243 G T SOCS6 Missense_Mutation p.D447Y 0.10 deleterious(0.01) probably_damaging(0.979) TCGA-19-5956-01 18 67993515 67993515 G T SOCS6 3'UTR 0.12 TCGA-19-5956-01 18 6942125 6942125 C T LAMA1 Missense_Mutation p.E3061K 0.10 deleterious(0.01) benign(0.029) TCGA-19-5956-01 18 6950843 6950843 G A LAMA1 Missense_Mutation p.L2779F 0.20 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 18 6977854 6977854 C A LAMA1 Missense_Mutation p.D2073Y 0.22 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 18 70417313 70417313 C T NETO1 Missense_Mutation p.D509N 0.14 deleterious_low_confidence(0.04) benign(0.107) TCGA-19-5956-01 18 70417682 70417682 C T NETO1 Missense_Mutation p.E386K 0.07 deleterious(0.04) benign(0.321) TCGA-19-5956-01 18 72234559 72234559 G A CNDP1 Missense_Mutation p.R216Q 0.34 tolerated(0.61) benign(0.004) TCGA-19-5956-01 18 72345734 72345734 T G ZNF407 Missense_Mutation p.I920S 0.10 deleterious(0) possibly_damaging(0.771) TCGA-19-5956-01 18 72347072 72347072 C A ZNF407 Missense_Mutation p.P1366H 0.17 tolerated(0.81) benign(0.01) TCGA-19-5956-01 18 72347561 72347561 G A ZNF407 Missense_Mutation p.R1529H 0.09 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 18 72589288 72589288 C T ZNF407 Silent p.S1671S 0.39 TCGA-19-5956-01 18 72776169 72776169 C T ZNF407 Silent p.S2164S 0.38 TCGA-19-5956-01 18 72999757 72999757 G A TSHZ1 Missense_Mutation p.D754N 0.15 tolerated(0.43) benign(0.006) TCGA-19-5956-01 18 72999842 72999842 C T TSHZ1 Missense_Mutation p.S782L 0.09 tolerated(0.05) benign(0.029) TCGA-19-5956-01 18 73122804 73122804 G T SMIM21 3'UTR 0.18 TCGA-19-5956-01 18 732914 732914 C A YES1 Missense_Mutation p.R448L 0.46 deleterious(0.05) benign(0.239) TCGA-19-5956-01 18 74154348 74154348 C T ZNF516 Silent p.R221R 0.11 TCGA-19-5956-01 18 745837 745837 G A YES1 Missense_Mutation p.R199C 0.15 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 18 74611021 74611021 C A ZNF236 Silent p.T577T 0.14 TCGA-19-5956-01 18 74611108 74611108 C T ZNF236 Silent p.V606V 0.24 TCGA-19-5956-01 18 77037166 77037166 C T ATP9B Missense_Mutation p.R461C 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 18 77067079 77067079 C T ATP9B Nonsense_Mutation p.R540* 0.53 TCGA-19-5956-01 18 77097450 77097450 G A ATP9B Splice_Site p.X761_splice 0.62 TCGA-19-5956-01 18 77137267 77137267 G T ATP9B Missense_Mutation p.V1110L 0.39 tolerated(1) benign(0.001) TCGA-19-5956-01 18 77227509 77227509 C T NFATC1 Silent p.H660H 0.51 TCGA-19-5956-01 18 77287648 77287648 A C NFATC1 3'UTR 0.10 TCGA-19-5956-01 18 77710859 77710859 G A PQLC1 Missense_Mutation p.A23V 0.84 tolerated(0.11) benign(0.067) TCGA-19-5956-01 18 77805941 77805941 C T RBFA Missense_Mutation p.T273M 0.48 deleterious(0.05) benign(0.136) TCGA-19-5956-01 18 77893920 77893920 G T ADNP2 Missense_Mutation p.K208N 0.11 tolerated(0.21) benign(0.053) TCGA-19-5956-01 18 8296434 8296434 A G PTPRM Silent p.R941R 0.23 TCGA-19-5956-01 18 8720454 8720454 C T SOGA2 Missense_Mutation p.S106F 0.10 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 18 8784017 8784017 A G SOGA2 Missense_Mutation p.T303A 0.40 tolerated(0.07) probably_damaging(0.991) TCGA-19-5956-01 18 9255615 9255615 G T ANKRD12 Nonsense_Mutation p.E784* 0.27 TCGA-19-5956-01 18 9275543 9275543 G A ANKRD12 Missense_Mutation p.E1929K 0.40 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 18 9359988 9359988 C T TWSG1 Missense_Mutation p.P48S 0.18 tolerated(0.08) benign(0.205) TCGA-19-5956-01 18 9584723 9584723 C T PPP4R1 Missense_Mutation p.R230Q 0.40 deleterious(0) probably_damaging(0.909) TCGA-19-5956-01 18 9859228 9859228 G A RAB31 Missense_Mutation p.R165H 0.37 deleterious(0.05) benign(0.005) TCGA-19-5956-01 18 9886738 9886738 G A TXNDC2 Missense_Mutation p.D88N 0.18 tolerated(0.45) possibly_damaging(0.759) TCGA-19-5956-01 18 9887222 9887222 C T TXNDC2 Missense_Mutation p.P249L 0.23 deleterious(0.01) benign(0.063) TCGA-19-5956-01 18 9887721 9887721 G T TXNDC2 Missense_Mutation p.K415N 0.13 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 19 10157819 10157819 C A C3P1 RNA 0.04 TCGA-19-5956-01 19 10221668 10221668 C T PPAN Missense_Mutation p.R417W 0.21 tolerated(0.11) benign(0.004) TCGA-19-5956-01 19 10277292 10277292 G A DNMT1 Silent p.D291D 0.40 TCGA-19-5956-01 19 10370499 10370499 C T MRPL4 3'UTR 0.15 TCGA-19-5956-01 19 10404936 10404936 C A ICAM5 Silent p.V644V 0.21 TCGA-19-5956-01 19 10472463 10472463 G A TYK2 Missense_Mutation p.H648Y 0.06 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 19 1055343 1055343 C T ABCA7 Missense_Mutation p.R1400C 0.32 deleterious(0.04) possibly_damaging(0.724) TCGA-19-5956-01 19 10577836 10577836 T C PDE4A Silent p.L734L 0.19 TCGA-19-5956-01 19 1059029 1059029 G A ABCA7 Missense_Mutation p.R1803H 0.38 tolerated(0.17) benign(0.003) TCGA-19-5956-01 19 10610218 10610218 G A KEAP1 Silent p.I164I 0.17 TCGA-19-5956-01 19 10793815 10793815 G T ILF3 Missense_Mutation p.Q521H 0.16 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 19 11031414 11031414 C T CARM1 Missense_Mutation p.P472S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 19 11313132 11313132 C T DOCK6 Missense_Mutation p.D1797N 0.50 tolerated(0.13) benign(0.087) TCGA-19-5956-01 19 11323870 11323870 C A DOCK6 Missense_Mutation p.Q1491H 0.25 tolerated(0.15) possibly_damaging(0.465) TCGA-19-5956-01 19 11354494 11354494 T G DOCK6 Missense_Mutation p.E363A 0.33 deleterious(0) possibly_damaging(0.757) TCGA-19-5956-01 19 11468366 11468366 C T DKFZP761J1410 Missense_Mutation p.P6L 0.23 deleterious(0.05) possibly_damaging(0.488) TCGA-19-5956-01 19 11475113 11475113 G A DKFZP761J1410 Missense_Mutation p.R344H 0.35 deleterious_low_confidence(0) benign(0.106) TCGA-19-5956-01 19 11606860 11606860 G A ZNF653 Missense_Mutation p.T155M 0.15 deleterious(0) possibly_damaging(0.779) TCGA-19-5956-01 19 11796482 11796482 G T ZNF833P RNA 0.49 TCGA-19-5956-01 19 11917152 11917152 T C ZNF491 Silent p.D128D 0.10 TCGA-19-5956-01 19 11917388 11917388 G T ZNF491 Missense_Mutation p.R207M 0.24 deleterious(0.02) probably_damaging(0.983) TCGA-19-5956-01 19 11943860 11943860 A C ZNF440 3'UTR 0.24 TCGA-19-5956-01 19 11943945 11943945 G T ZNF440 3'UTR 0.31 TCGA-19-5956-01 19 12154972 12154972 C T ZNF878 Missense_Mutation p.R415Q 0.36 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 19 12244288 12244288 C T ZNF20 Missense_Mutation p.R238H 0.24 tolerated(0.45) benign(0.003) TCGA-19-5956-01 19 12298901 12298901 C A ZNF136 3'UTR 0.36 TCGA-19-5956-01 19 12358813 12358813 A G ZNF44 Missense_Mutation p.V301A 0.75 benign(0.004) TCGA-19-5956-01 19 12384420 12384420 C A ZNF44 Missense_Mutation p.R265I 0.25 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 19 12491644 12491644 C A CTD-3105H18.14 3'UTR 0.19 TCGA-19-5956-01 19 12501299 12501299 C A ZNF799 Missense_Mutation p.R638I 0.39 tolerated(0.47) benign(0.258) TCGA-19-5956-01 19 12511926 12511926 C T ZNF799 5'UTR 0.27 TCGA-19-5956-01 19 12574925 12574925 C T ZNF709 Missense_Mutation p.R604Q 0.24 tolerated(0.74) benign(0) TCGA-19-5956-01 19 12692176 12692176 C T ZNF490 Missense_Mutation p.R238Q 0.07 tolerated(0.72) benign(0.196) TCGA-19-5956-01 19 12812592 12812592 C T TNPO2 Missense_Mutation p.G829S 0.20 tolerated(0.96) benign(0.002) TCGA-19-5956-01 19 12866734 12866734 C T BEST2 Silent p.I311I 0.09 TCGA-19-5956-01 19 13007018 13007018 G T GCDH Splice_Site p.X212_splice 0.11 TCGA-19-5956-01 19 13010437 13010437 G A GCDH 3'UTR 0.14 TCGA-19-5956-01 19 13010772 13010772 C A SYCE2 Intron 0.09 TCGA-19-5956-01 19 13862588 13862588 G A CCDC130 5'UTR 0.46 TCGA-19-5956-01 19 14066781 14066781 G A DCAF15 Missense_Mutation p.V142I 0.46 tolerated(0.11) possibly_damaging(0.664) TCGA-19-5956-01 19 14080911 14080911 A G RFX1 Missense_Mutation p.L464S 0.18 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 19 14139198 14139198 A G RLN3 Missense_Mutation p.E61G 0.06 tolerated(0.16) benign(0.006) TCGA-19-5956-01 19 14199319 14199319 G A SAMD1 Silent p.L403L 0.22 TCGA-19-5956-01 19 14218200 14218200 G A PRKACA Missense_Mutation p.A23V 0.43 tolerated(0.08) benign(0.008) TCGA-19-5956-01 19 14274127 14274127 C T LPHN1 Silent p.P167P 0.17 TCGA-19-5956-01 19 15053134 15053134 C T OR7C2 Silent p.T278T 0.42 TCGA-19-5956-01 19 15124542 15124542 A C CCDC105 Missense_Mutation p.K210T 0.14 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 15132175 15132175 G T CCDC105 Missense_Mutation p.L295F 0.14 tolerated(0.12) benign(0.006) TCGA-19-5956-01 19 15278159 15278159 G A NOTCH3 Silent p.L1755L 0.27 TCGA-19-5956-01 19 15298125 15298125 C T NOTCH3 Missense_Mutation p.R544H 0.33 tolerated(0.12) benign(0.002) TCGA-19-5956-01 19 15379782 15379782 G T BRD4 Nonsense_Mutation p.Y119* 0.10 TCGA-19-5956-01 19 15383750 15383750 T C BRD4 Missense_Mutation p.N54S 0.12 unknown(0) TCGA-19-5956-01 19 15472594 15472594 G A AKAP8 Missense_Mutation p.R448C 0.37 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 19 15484144 15484144 G A AKAP8 Missense_Mutation p.R127C 0.50 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 19 15510126 15510126 G A AKAP8L Missense_Mutation p.R382C 0.16 deleterious(0) probably_damaging(0.973) TCGA-19-5956-01 19 15511119 15511119 C T AKAP8L Silent p.E345E 0.08 TCGA-19-5956-01 19 15535617 15535617 G A WIZ Silent p.A612A 0.28 TCGA-19-5956-01 19 15547714 15547714 C T WIZ Silent p.P144P 0.21 TCGA-19-5956-01 19 15640547 15640547 G T CYP4F22 Missense_Mutation p.D84Y 0.21 tolerated(1) possibly_damaging(0.857) TCGA-19-5956-01 19 15640555 15640555 G T CYP4F22 Missense_Mutation p.K86N 0.10 tolerated(0.37) benign(0.007) TCGA-19-5956-01 19 15651423 15651423 C A CYP4F22 Silent p.V278V 0.19 TCGA-19-5956-01 19 15789114 15789114 C T CYP4F12 Missense_Mutation p.S81L 0.41 tolerated(0.34) benign(0.015) TCGA-19-5956-01 19 15852474 15852474 G A OR10H3 Missense_Mutation p.R91H 0.45 tolerated(0.39) benign(0.001) TCGA-19-5956-01 19 15904967 15904967 T C OR10H5 Missense_Mutation p.F37L 0.42 tolerated(0.97) benign(0.291) TCGA-19-5956-01 19 15905179 15905179 C T OR10H5 Silent p.F107F 0.42 TCGA-19-5956-01 19 15905218 15905218 C T OR10H5 Silent p.Y120Y 0.28 TCGA-19-5956-01 19 15918690 15918690 C T OR10H1 Missense_Mutation p.R53H 0.14 tolerated(0.43) benign(0.003) TCGA-19-5956-01 19 16060216 16060216 C T OR10H4 Silent p.Y133Y 0.45 TCGA-19-5956-01 19 16259559 16259559 C T HSH2D Intron 0.37 TCGA-19-5956-01 19 16278987 16278987 G T CIB3 Missense_Mutation p.P103T 0.38 tolerated(0.27) probably_damaging(0.999) TCGA-19-5956-01 19 16280488 16280488 C T CIB3 Missense_Mutation p.D51N 0.47 tolerated(0.91) benign(0.001) TCGA-19-5956-01 19 16319898 16319898 C T AP1M1 Silent p.T152T 0.53 TCGA-19-5956-01 19 16594881 16594881 G T CALR3 Missense_Mutation p.L180I 0.10 tolerated(0.07) probably_damaging(0.992) TCGA-19-5956-01 19 16617529 16617529 T G C19orf44 Missense_Mutation p.L365V 0.18 deleterious(0) possibly_damaging(0.895) TCGA-19-5956-01 19 16790803 16790803 G A TMEM38A Missense_Mutation p.E45K 0.19 tolerated(0.19) probably_damaging(0.911) TCGA-19-5956-01 19 16923615 16923615 C T NWD1 Intron 0.39 TCGA-19-5956-01 19 16926072 16926072 G T NWD1 3'UTR 0.44 TCGA-19-5956-01 19 16976288 16976288 C A SIN3B Missense_Mutation p.S516Y 0.27 deleterious(0) possibly_damaging(0.76) TCGA-19-5956-01 19 16980623 16980623 C T SIN3B Missense_Mutation p.P752L 0.27 tolerated(0.12) benign(0.002) TCGA-19-5956-01 19 17013464 17013464 G A CPAMD8 Silent p.C1607C 0.43 TCGA-19-5956-01 19 17104352 17104352 C T CPAMD8 Silent p.T427T 0.35 TCGA-19-5956-01 19 17213300 17213300 C T MYO9B Missense_Mutation p.A258V 0.23 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 17337937 17337937 C T OCEL1 Silent p.G127G 0.18 TCGA-19-5956-01 19 17339113 17339113 C T OCEL1 Nonsense_Mutation p.R223* 0.19 TCGA-19-5956-01 19 17389873 17389873 C A BABAM1 3'UTR 0.47 TCGA-19-5956-01 19 17403476 17403476 C A ABHD8 Missense_Mutation p.K438N 0.40 tolerated_low_confidence(0.41) unknown(0) TCGA-19-5956-01 19 17571474 17571474 G A NXNL1 Missense_Mutation p.R69W 0.36 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 19 17615486 17615486 G A SLC27A1 3'UTR 0.24 TCGA-19-5956-01 19 17671255 17671255 T G COLGALT1 Missense_Mutation p.M157R 0.37 tolerated(0.86) benign(0.006) TCGA-19-5956-01 19 17756572 17756572 C A UNC13A Missense_Mutation p.R756M 0.26 deleterious(0) possibly_damaging(0.792) TCGA-19-5956-01 19 18170857 18170857 C A IL12RB1 Missense_Mutation p.E610D 0.17 tolerated(0.19) benign(0.055) TCGA-19-5956-01 19 18180471 18180471 C T IL12RB1 Nonsense_Mutation p.W358* 0.54 TCGA-19-5956-01 19 18180497 18180497 C T IL12RB1 Missense_Mutation p.G350R 0.15 deleterious(0.03) benign(0.091) TCGA-19-5956-01 19 18193024 18193024 G A IL12RB1 Missense_Mutation p.R59C 0.41 tolerated(0.14) benign(0) TCGA-19-5956-01 19 18285964 18285964 C T IFI30 Missense_Mutation p.L83F 0.41 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 18329801 18329801 C T PDE4C Silent p.A338A 0.12 TCGA-19-5956-01 19 18377078 18377078 C T KIAA1683 Silent p.T424T 0.19 TCGA-19-5956-01 19 18499786 18499786 C T GDF15 3'UTR 0.25 TCGA-19-5956-01 19 18778706 18778706 A G KLHL26 Missense_Mutation p.N167D 0.09 tolerated(0.69) benign(0.165) TCGA-19-5956-01 19 18964116 18964116 G A UPF1 Silent p.A371A 0.20 TCGA-19-5956-01 19 1917727 1917727 C A SCAMP4 Missense_Mutation p.F14L 0.15 tolerated(0.06) probably_damaging(0.997) TCGA-19-5956-01 19 19309992 19309992 G A RFXANK Missense_Mutation p.D221N 0.16 tolerated(0.05) possibly_damaging(0.85) TCGA-19-5956-01 19 19312453 19312453 C A RFXANK Intron 0.21 TCGA-19-5956-01 19 19338662 19338662 A G NCAN Missense_Mutation p.T745A 0.23 tolerated(0.55) benign(0.001) TCGA-19-5956-01 19 19377305 19377305 G A TM6SF2 Silent p.I306I 0.08 TCGA-19-5956-01 19 19655549 19655549 C T CILP2 Missense_Mutation p.P732L 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 19675764 19675764 G A PBX4 Silent p.S301S 0.12 TCGA-19-5956-01 19 19681024 19681024 G A PBX4 Missense_Mutation p.R176C 0.28 tolerated(0.05) benign(0.103) TCGA-19-5956-01 19 19756697 19756697 C T ATP13A1 Missense_Mutation p.A1116T 0.20 deleterious(0.03) benign(0.337) TCGA-19-5956-01 19 19765382 19765382 G T ATP13A1 Missense_Mutation p.L595M 0.08 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 19 19790969 19790969 G A ZNF101 Missense_Mutation p.E391K 0.45 deleterious(0.01) possibly_damaging(0.836) TCGA-19-5956-01 19 19822199 19822199 G A ZNF14 Nonsense_Mutation p.R631* 0.24 TCGA-19-5956-01 19 19822451 19822451 G A ZNF14 Nonsense_Mutation p.R547* 0.21 TCGA-19-5956-01 19 20027438 20027438 G T ZNF93 Missense_Mutation p.R67I 0.11 tolerated(0.08) benign(0.168) TCGA-19-5956-01 19 20235847 20235847 G A CTC-260E6.2 RNA 0.40 TCGA-19-5956-01 19 20728779 20728779 G A ZNF737 Missense_Mutation p.T77M 0.30 tolerated(1) benign(0.002) TCGA-19-5956-01 19 20976720 20976720 C T ZNF66 Intron 0.23 TCGA-19-5956-01 19 21132085 21132085 G A ZNF85 Silent p.E255E 0.11 TCGA-19-5956-01 19 21132505 21132505 G T ZNF85 Missense_Mutation p.E395D 0.16 deleterious(0.02) possibly_damaging(0.732) TCGA-19-5956-01 19 21132729 21132729 C A ZNF85 Missense_Mutation p.T470N 0.45 tolerated(0.2) benign(0.053) TCGA-19-5956-01 19 21239593 21239593 A G ZNF430 Missense_Mutation p.E160G 0.09 tolerated(0.78) benign(0.012) TCGA-19-5956-01 19 21365547 21365547 C T ZNF431 Silent p.G147G 0.36 TCGA-19-5956-01 19 21476440 21476440 G T ZNF708 Missense_Mutation p.T443N 0.46 deleterious(0) benign(0.112) TCGA-19-5956-01 19 21607496 21607496 C A ZNF493 Missense_Mutation p.H679N 0.39 deleterious(0) possibly_damaging(0.786) TCGA-19-5956-01 19 21607716 21607716 G A ZNF493 Missense_Mutation p.R752Q 0.13 tolerated(0.7) benign(0.279) TCGA-19-5956-01 19 21720554 21720554 T G ZNF429 Missense_Mutation p.C567G 0.12 deleterious(0) possibly_damaging(0.66) TCGA-19-5956-01 19 21909597 21909597 G T ZNF100 Missense_Mutation p.T506N 0.12 deleterious(0.03) benign(0.051) TCGA-19-5956-01 19 21990922 21990922 T C ZNF43 Silent p.K639K 0.54 TCGA-19-5956-01 19 22155118 22155118 T C ZNF208 Silent p.K906K 0.18 TCGA-19-5956-01 19 22271081 22271081 G T ZNF257 Nonsense_Mutation p.E177* 0.20 TCGA-19-5956-01 19 22271205 22271205 G A ZNF257 Missense_Mutation p.R218Q 0.26 tolerated(0.27) benign(0.038) TCGA-19-5956-01 19 22363640 22363640 G T ZNF676 Silent p.S293S 0.15 TCGA-19-5956-01 19 22585664 22585664 G A ZNF98 Silent p.D60D 0.39 TCGA-19-5956-01 19 2290156 2290156 G A LINGO3 Silent p.G540G 0.50 TCGA-19-5956-01 19 2291369 2291369 T C LINGO3 Missense_Mutation p.N136S 0.33 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 19 22939264 22939264 C A ZNF99 3'Flank 0.32 TCGA-19-5956-01 19 22940685 22940685 G A ZNF99 Missense_Mutation p.P676S 0.16 deleterious(0.05) benign(0.155) TCGA-19-5956-01 19 23170129 23170129 C A ZNF728 Missense_Mutation p.E69D 0.20 deleterious(0.04) benign(0.039) TCGA-19-5956-01 19 23329626 23329626 A G ZNF730 3'UTR 0.36 TCGA-19-5956-01 19 2351453 2351453 T C LLfos-48D6.1 3'Flank 0.10 TCGA-19-5956-01 19 23543496 23543496 C A ZNF91 Missense_Mutation p.R762I 0.14 tolerated(0.16) probably_damaging(0.988) TCGA-19-5956-01 19 2476233 2476233 T C GADD45B 5'UTR 0.15 TCGA-19-5956-01 19 2877716 2877716 G A ZNF556 Missense_Mutation p.A254T 0.19 tolerated(1) benign(0) TCGA-19-5956-01 19 29698441 29698441 T C UQCRFS1 3'UTR 0.59 TCGA-19-5956-01 19 30313491 30313491 G A CCNE1 Missense_Mutation p.R364K 0.37 tolerated(0.05) benign(0.013) TCGA-19-5956-01 19 30314738 30314738 C A CCNE1 3'UTR 0.09 TCGA-19-5956-01 19 32873487 32873487 C T ZNF507 Silent p.D825D 0.10 TCGA-19-5956-01 19 3290285 3290285 G A CELF5 Missense_Mutation p.E415K 0.31 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 19 32927441 32927441 C A DPY19L3 Missense_Mutation p.L140I 0.38 tolerated(0.07) probably_damaging(0.996) TCGA-19-5956-01 19 33167321 33167321 C T RGS9BP Missense_Mutation p.A51V 0.29 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 19 33167859 33167859 C T RGS9BP Silent p.C230C 0.29 TCGA-19-5956-01 19 33487083 33487083 C T RHPN2 Silent p.S423S 0.08 TCGA-19-5956-01 19 33651385 33651385 C T WDR88 Missense_Mutation p.R355W 0.09 deleterious(0.03) probably_damaging(0.97) TCGA-19-5956-01 19 33696410 33696410 A G LRP3 Missense_Mutation p.D245G 0.27 deleterious(0.03) benign(0.121) TCGA-19-5956-01 19 33703444 33703444 C T SLC7A10 Missense_Mutation p.V204M 0.12 tolerated(0.8) benign(0.014) TCGA-19-5956-01 19 34180122 34180122 G T CHST8 5'UTR 0.13 TCGA-19-5956-01 19 34857298 34857298 G T GPI Missense_Mutation p.K96N 0.09 deleterious_low_confidence(0) probably_damaging(1) TCGA-19-5956-01 19 34916978 34916978 G T PDCD2L Nonsense_Mutation p.E344* 0.39 TCGA-19-5956-01 19 34960009 34960009 C T UBA2 Silent p.D602D 0.22 TCGA-19-5956-01 19 35175788 35175788 G T ZNF302 Missense_Mutation p.E282D 0.14 deleterious(0.01) possibly_damaging(0.584) TCGA-19-5956-01 19 35231643 35231643 G T ZNF181 Missense_Mutation p.K119N 0.09 tolerated(0.07) benign(0.063) TCGA-19-5956-01 19 35232771 35232771 G T ZNF181 Silent p.G495G 0.35 TCGA-19-5956-01 19 35250882 35250882 C T ZNF599 Missense_Mutation p.R275H 0.09 deleterious(0) benign(0.07) TCGA-19-5956-01 19 35251312 35251312 C T ZNF599 Missense_Mutation p.E132K 0.19 tolerated(0.11) benign(0.11) TCGA-19-5956-01 19 3532484 3532484 G A FZR1 Missense_Mutation p.A360T 0.45 deleterious(0) possibly_damaging(0.753) TCGA-19-5956-01 19 35449184 35449184 C T ZNF792 Silent p.R525R 0.34 TCGA-19-5956-01 19 35449912 35449912 C A ZNF792 Nonsense_Mutation p.E283* 0.45 TCGA-19-5956-01 19 35524448 35524448 C T SCN1B Missense_Mutation p.R85C 0.50 deleterious_low_confidence(0.02) probably_damaging(0.952) TCGA-19-5956-01 19 35551663 35551663 C T HPN Silent p.S251S 0.20 TCGA-19-5956-01 19 35660547 35660547 G A FXYD5 3'UTR 0.48 TCGA-19-5956-01 19 35719218 35719218 G T FAM187B Missense_Mutation p.D122E 0.26 deleterious(0.05) benign(0.068) TCGA-19-5956-01 19 35741237 35741237 G T LSR Missense_Mutation p.Q91H 0.21 tolerated(0.13) probably_damaging(0.997) TCGA-19-5956-01 19 35770072 35770072 C T USF2 Silent p.I318I 0.40 TCGA-19-5956-01 19 35786611 35786611 G A MAG Missense_Mutation p.D48N 0.14 tolerated(0.15) benign(0.254) TCGA-19-5956-01 19 35786761 35786761 C T MAG Nonsense_Mutation p.R98* 0.26 TCGA-19-5956-01 19 35800925 35800925 C T MAG Silent p.F460F 0.53 TCGA-19-5956-01 19 35823622 35823622 G A CD22 Silent p.S69S 0.21 TCGA-19-5956-01 19 35836617 35836617 G A CD22 Missense_Mutation p.R774Q 0.08 tolerated(0.16) possibly_damaging(0.775) TCGA-19-5956-01 19 3600326 3600326 G A TBXA2R Missense_Mutation p.R103C 0.24 tolerated(0.1) possibly_damaging(0.806) TCGA-19-5956-01 19 36004149 36004149 C A DMKN Nonsense_Mutation p.E77* 0.08 TCGA-19-5956-01 19 36029251 36029251 G T GAPDHS Missense_Mutation p.E96D 0.11 tolerated_low_confidence(0.07) benign(0.064) TCGA-19-5956-01 19 36035740 36035740 G T GAPDHS Intron 0.13 TCGA-19-5956-01 19 36041532 36041532 C A ATP4A Missense_Mutation p.Q1031H 0.22 tolerated(0.07) benign(0.108) TCGA-19-5956-01 19 36046418 36046418 C T ATP4A Missense_Mutation p.R694H 0.34 tolerated(0.09) possibly_damaging(0.744) TCGA-19-5956-01 19 36051315 36051315 C T ATP4A Missense_Mutation p.S246N 0.41 tolerated(1) benign(0.006) TCGA-19-5956-01 19 36206727 36206727 C T ZBTB32 Missense_Mutation p.T317I 0.21 deleterious(0.04) possibly_damaging(0.507) TCGA-19-5956-01 19 36210888 36210888 C T KMT2B Silent p.P213P 0.39 TCGA-19-5956-01 19 36218439 36218439 C T KMT2B Silent p.S1406S 0.25 TCGA-19-5956-01 19 36230853 36230853 T A IGFLR1 Missense_Mutation p.N160I 0.25 tolerated(0.25) benign(0.077) TCGA-19-5956-01 19 36234928 36234928 C T U2AF1L4 Intron 0.19 TCGA-19-5956-01 19 36250297 36250297 G T C19orf55 Missense_Mutation p.D12Y 0.18 deleterious(0.01) possibly_damaging(0.891) TCGA-19-5956-01 19 36303113 36303113 G T PRODH2 Missense_Mutation p.L221I 0.08 tolerated(0.19) benign(0.008) TCGA-19-5956-01 19 36303395 36303395 C T PRODH2 Missense_Mutation p.V156I 0.16 tolerated(0.55) benign(0.003) TCGA-19-5956-01 19 36357155 36357155 C T KIRREL2 Missense_Mutation p.P630S 0.55 tolerated(0.08) benign(0.169) TCGA-19-5956-01 19 36362584 36362584 G A APLP1 Missense_Mutation p.R203H 0.11 tolerated(0.51) probably_damaging(0.995) TCGA-19-5956-01 19 36369800 36369800 G A APLP1 Silent p.A553A 0.39 TCGA-19-5956-01 19 36398148 36398148 C T TYROBP Missense_Mutation p.R83H 0.58 tolerated(0.27) benign(0.021) TCGA-19-5956-01 19 36431671 36431671 G T LRFN3 Missense_Mutation p.Q448H 0.14 tolerated(0.15) benign(0.02) TCGA-19-5956-01 19 36501872 36501872 G A ALKBH6 Missense_Mutation p.S115L 0.10 deleterious(0.01) possibly_damaging(0.757) TCGA-19-5956-01 19 36592920 36592920 C T WDR62 Silent p.C1029C 0.09 TCGA-19-5956-01 19 36592960 36592960 C T WDR62 Missense_Mutation p.P1043S 0.47 tolerated(0.12) possibly_damaging(0.598) TCGA-19-5956-01 19 36685205 36685205 G A ZNF565 Silent p.V54V 0.43 TCGA-19-5956-01 19 36727641 36727641 T G ZNF146 Missense_Mutation p.F100C 0.49 deleterious(0) probably_damaging(0.937) TCGA-19-5956-01 19 36858812 36858812 A C ZFP14 5'UTR 0.39 TCGA-19-5956-01 19 36884673 36884673 C A ZFP82 Missense_Mutation p.R190I 0.10 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 19 36900709 36900709 A T ZFP82 5'UTR 0.33 TCGA-19-5956-01 19 37005014 37005014 G A ZNF260 Missense_Mutation p.A376V 0.18 tolerated(0.26) possibly_damaging(0.79) TCGA-19-5956-01 19 37038602 37038602 G T ZNF529 Missense_Mutation p.F286L 0.22 deleterious(0.01) benign(0.052) TCGA-19-5956-01 19 37117367 37117367 G A ZNF382 Missense_Mutation p.E190K 0.21 tolerated(0.3) benign(0.054) TCGA-19-5956-01 19 37117998 37117998 G T ZNF382 Missense_Mutation p.R400I 0.15 tolerated(0.06) probably_damaging(0.995) TCGA-19-5956-01 19 37210042 37210042 G T ZNF567 Missense_Mutation p.R108M 0.20 tolerated(0.38) benign(0.054) TCGA-19-5956-01 19 37210780 37210780 G T ZNF567 Missense_Mutation p.R354I 0.19 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 19 37369243 37369243 A C ZNF345 3'UTR 0.27 TCGA-19-5956-01 19 37441014 37441014 A T ZNF568 Missense_Mutation p.N320I 0.10 tolerated(0.25) probably_damaging(1) TCGA-19-5956-01 19 3750146 3750146 G A TJP3 Missense_Mutation p.R883H 0.05 tolerated(0.38) benign(0.001) TCGA-19-5956-01 19 37579977 37579977 G T ZNF420 5'UTR 0.18 TCGA-19-5956-01 19 37618190 37618190 A G ZNF420 Silent p.Q99Q 0.14 TCGA-19-5956-01 19 37643441 37643441 G T ZNF585A Missense_Mutation p.H399N 0.10 tolerated(0.57) probably_damaging(0.953) TCGA-19-5956-01 19 37644470 37644470 G A ZNF585A Missense_Mutation p.L56F 0.10 tolerated(1) benign(0.003) TCGA-19-5956-01 19 37677318 37677318 C A ZNF585B Missense_Mutation p.R374I 0.06 deleterious(0.01) probably_damaging(0.994) TCGA-19-5956-01 19 37680975 37680975 G A ZNF585B Silent p.N50N 0.21 TCGA-19-5956-01 19 37733411 37733411 G T ZNF383 Missense_Mutation p.K91N 0.06 tolerated(0.07) possibly_damaging(0.662) TCGA-19-5956-01 19 37904717 37904717 C A ZNF569 Missense_Mutation p.Q281H 0.47 tolerated(0.38) probably_damaging(0.999) TCGA-19-5956-01 19 37904934 37904934 G A ZNF569 Missense_Mutation p.T209I 0.09 tolerated(0.08) benign(0.416) TCGA-19-5956-01 19 37976172 37976172 T G ZNF570 3'UTR 0.41 TCGA-19-5956-01 19 38028636 38028636 G A ZNF793 Missense_Mutation p.R359K 0.09 deleterious(0.03) benign(0.199) TCGA-19-5956-01 19 38102613 38102613 C T ZNF540 Silent p.I144I 0.09 TCGA-19-5956-01 19 38134180 38134180 C A ZFP30 Missense_Mutation p.R74I 0.05 tolerated(0.05) benign(0.001) TCGA-19-5956-01 19 38160457 38160457 C A ZNF781 Missense_Mutation p.R198I 0.29 deleterious(0) benign(0.308) TCGA-19-5956-01 19 38572353 38572353 C A SIPA1L3 Missense_Mutation p.L50I 0.32 tolerated(0.3) benign(0.001) TCGA-19-5956-01 19 38573081 38573081 C T SIPA1L3 Silent p.G292G 0.56 TCGA-19-5956-01 19 38873956 38873956 G T PSMD8 Missense_Mutation p.D327Y 0.10 deleterious(0.01) possibly_damaging(0.903) TCGA-19-5956-01 19 38876201 38876201 G A GGN Silent p.S567S 0.15 TCGA-19-5956-01 19 38876251 38876251 G A GGN Nonsense_Mutation p.R551* 0.26 TCGA-19-5956-01 19 38985047 38985047 C T RYR1 Silent p.F2110F 0.47 TCGA-19-5956-01 19 39018947 39018947 C T RYR1 Missense_Mutation p.T3609I 0.17 benign(0.064) TCGA-19-5956-01 19 39038969 39038969 T G RYR1 Missense_Mutation p.F4064C 0.10 benign(0.002) TCGA-19-5956-01 19 39303528 39303528 G A LGALS4 5'UTR 0.09 TCGA-19-5956-01 19 39384479 39384479 G A SIRT2 Missense_Mutation p.A31V 0.35 tolerated(0.18) probably_damaging(0.993) TCGA-19-5956-01 19 39390213 39390213 C G SIRT2 5'UTR 0.10 TCGA-19-5956-01 19 39666024 39666024 C T PAK4 Silent p.G435G 0.33 TCGA-19-5956-01 19 39734753 39734753 C T IFNL3 Silent p.T101T 0.40 TCGA-19-5956-01 19 3978010 3978010 C T EEF2 Missense_Mutation p.R625H 0.18 tolerated(0.07) possibly_damaging(0.79) TCGA-19-5956-01 19 39788679 39788679 G A IFNL1 Missense_Mutation p.A109T 0.16 tolerated(0.3) benign(0.053) TCGA-19-5956-01 19 39789200 39789200 A G IFNL1 3'UTR 0.50 TCGA-19-5956-01 19 39819657 39819657 T C GMFG Missense_Mutation p.T114A 0.08 tolerated(0.56) benign(0.001) TCGA-19-5956-01 19 3984325 3984325 G A EEF2 Silent p.I9I 0.21 TCGA-19-5956-01 19 39873855 39873855 G A SAMD4B Silent p.P660P 0.15 TCGA-19-5956-01 19 39873894 39873894 G A SAMD4B Silent p.E673E 0.11 TCGA-19-5956-01 19 39926564 39926564 C T RPS16 5'UTR 0.50 TCGA-19-5956-01 19 39960845 39960845 C T SUPT5H Silent p.G487G 0.07 TCGA-19-5956-01 19 39976910 39976910 C A TIMM50 Silent p.I295I 0.24 TCGA-19-5956-01 19 39979214 39979214 G A TIMM50 Missense_Mutation p.V400M 0.46 deleterious(0.01) possibly_damaging(0.852) TCGA-19-5956-01 19 40095960 40095960 G A LGALS13 Missense_Mutation p.D79N 0.46 tolerated(0.38) benign(0.004) TCGA-19-5956-01 19 40172148 40172148 G A AC093063.3 5'Flank 0.20 TCGA-19-5956-01 19 40197888 40197888 C T LGALS14 Nonsense_Mutation p.R84* 0.16 TCGA-19-5956-01 19 40197930 40197930 T C LGALS14 Missense_Mutation p.F98L 0.18 tolerated(0.66) benign(0.149) TCGA-19-5956-01 19 40366131 40366131 A T FCGBP Silent p.V4701V 0.11 TCGA-19-5956-01 19 40366152 40366152 G A FCGBP Silent p.C4694C 0.11 TCGA-19-5956-01 19 40380304 40380304 C T FCGBP Missense_Mutation p.D3671N 0.12 possibly_damaging(0.831) TCGA-19-5956-01 19 40411670 40411670 G T FCGBP Missense_Mutation p.L1320M 0.07 probably_damaging(0.995) TCGA-19-5956-01 19 40478074 40478074 G A PSMC4 Missense_Mutation p.V20M 0.39 tolerated_low_confidence(0.11) benign(0.103) TCGA-19-5956-01 19 40480508 40480508 C T PSMC4 Missense_Mutation p.L183F 0.18 tolerated(0.06) possibly_damaging(0.462) TCGA-19-5956-01 19 40521624 40521624 G A ZNF546 Missense_Mutation p.R816H 0.13 tolerated(0.33) possibly_damaging(0.694) TCGA-19-5956-01 19 40540617 40540617 G A ZNF780B Nonsense_Mutation p.R717* 0.30 TCGA-19-5956-01 19 40541808 40541808 G A ZNF780B Missense_Mutation p.L320F 0.11 tolerated(0.06) probably_damaging(0.98) TCGA-19-5956-01 19 40581123 40581123 C A ZNF780A Missense_Mutation p.S410I 0.21 deleterious(0.03) possibly_damaging(0.52) TCGA-19-5956-01 19 40698552 40698552 G A MAP3K10 Missense_Mutation p.R205Q 0.17 deleterious(0.03) possibly_damaging(0.489) TCGA-19-5956-01 19 40902195 40902195 G T PRX Silent p.V688V 0.26 TCGA-19-5956-01 19 40902535 40902535 G A PRX Missense_Mutation p.P575L 0.45 deleterious(0) possibly_damaging(0.859) TCGA-19-5956-01 19 40902578 40902578 C A PRX Nonsense_Mutation p.E561* 0.17 TCGA-19-5956-01 19 40902771 40902771 C T PRX Silent p.L496L 0.13 TCGA-19-5956-01 19 41025356 41025356 C T SPTBN4 Silent p.S984S 0.58 TCGA-19-5956-01 19 41094577 41094577 C T SHKBP1 Missense_Mutation p.R462C 0.08 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 19 41122862 41122862 C T LTBP4 Silent p.G1027G 0.20 TCGA-19-5956-01 19 41129848 41129848 C T LTBP4 Silent p.D1297D 0.17 TCGA-19-5956-01 19 4117524 4117524 C T MAP2K2 Missense_Mutation p.E66K 0.51 deleterious(0.01) possibly_damaging(0.895) TCGA-19-5956-01 19 41216006 41216006 C T ADCK4 Missense_Mutation p.E109K 0.42 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 19 41450620 41450620 C T AC092071.1 5'Flank 0.12 TCGA-19-5956-01 19 41628803 41628803 C T CYP2F1 Missense_Mutation p.T300I 0.15 deleterious(0.02) probably_damaging(0.923) TCGA-19-5956-01 19 41744411 41744411 G A AXL Missense_Mutation p.R344Q 0.18 tolerated(0.22) benign(0.072) TCGA-19-5956-01 19 41809935 41809935 G A HNRNPUL1 Silent p.R677R 0.39 TCGA-19-5956-01 19 41854203 41854203 G A TGFB1 Silent p.Y171Y 0.15 TCGA-19-5956-01 19 419011 419011 C T SHC2 Missense_Mutation p.D556N 0.18 tolerated(0.85) benign(0.053) TCGA-19-5956-01 19 42085831 42085831 C T CEACAM21 Silent p.L184L 0.44 TCGA-19-5956-01 19 42222117 42222117 C A CEACAM5 Silent p.S436S 0.19 TCGA-19-5956-01 19 42260777 42260777 G A CEACAM6 Missense_Mutation p.V112I 0.22 tolerated(0.15) benign(0.045) TCGA-19-5956-01 19 42462524 42462524 G C RABAC1 Missense_Mutation p.P94R 0.26 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 19 42510859 42510859 C T GRIK5 Missense_Mutation p.A659T 0.54 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 19 42713874 42713874 G T DEDD2 Silent p.S189S 0.43 TCGA-19-5956-01 19 42795055 42795055 G A CIC Missense_Mutation p.G712D 0.15 benign(0.18) TCGA-19-5956-01 19 42839498 42839498 C T MEGF8 Silent p.S263S 0.57 TCGA-19-5956-01 19 42873137 42873137 C T MEGF8 Silent p.T2141T 0.10 TCGA-19-5956-01 19 42880274 42880274 G A MEGF8 Missense_Mutation p.G2562S 0.27 tolerated(0.07) benign(0.243) TCGA-19-5956-01 19 43023205 43023205 G T CEACAM1 Missense_Mutation p.L381I 0.10 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 19 43233434 43233434 C T PSG3 Missense_Mutation p.A362T 0.21 tolerated(0.71) benign(0.118) TCGA-19-5956-01 19 43349213 43349213 G A PSG10P RNA 0.49 TCGA-19-5956-01 19 43349267 43349267 G T PSG10P RNA 0.10 TCGA-19-5956-01 19 43359737 43359737 T C PSG10P RNA 0.43 TCGA-19-5956-01 19 43411800 43411800 C A PSG6 Nonsense_Mutation p.G305* 0.44 TCGA-19-5956-01 19 43414732 43414732 G A PSG6 Missense_Mutation p.P236S 0.37 tolerated(0.47) benign(0.004) TCGA-19-5956-01 19 43430152 43430152 G T PSG7 Missense_Mutation p.P339H 0.22 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 19 4364118 4364118 C A SH3GL1 Missense_Mutation p.Q144H 0.42 tolerated(0.27) benign(0.064) TCGA-19-5956-01 19 4365511 4365511 T C SH3GL1 Missense_Mutation p.H100R 0.12 deleterious(0) benign(0.116) TCGA-19-5956-01 19 43698600 43698600 G T PSG4 Missense_Mutation p.L379I 0.17 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 19 43708201 43708201 A C PSG4 Missense_Mutation p.I89M 0.19 deleterious(0.01) possibly_damaging(0.833) TCGA-19-5956-01 19 43762460 43762460 G T PSG9 Silent p.L379L 0.17 TCGA-19-5956-01 19 43763027 43763027 C T PSG9 Missense_Mutation p.V324I 0.39 tolerated(0.14) benign(0.101) TCGA-19-5956-01 19 43866437 43866437 G A CD177 3'UTR 0.56 TCGA-19-5956-01 19 43922369 43922369 C A TEX101 Silent p.G208G 0.29 TCGA-19-5956-01 19 43965917 43965917 G T LYPD3 Missense_Mutation p.F209L 0.11 tolerated(0.13) possibly_damaging(0.56) TCGA-19-5956-01 19 44097436 44097436 C T IRGQ Missense_Mutation p.G205D 0.19 tolerated(0.29) probably_damaging(1) TCGA-19-5956-01 19 44118352 44118352 C T SRRM5 Silent p.A693A 0.13 TCGA-19-5956-01 19 44223318 44223318 G T IRGC Missense_Mutation p.R203L 0.23 deleterious(0.04) probably_damaging(0.951) TCGA-19-5956-01 19 44223820 44223820 G A IRGC Silent p.T370T 0.46 TCGA-19-5956-01 19 44271732 44271732 G A KCNN4 Missense_Mutation p.P416L 0.36 tolerated(0.05) benign(0.022) TCGA-19-5956-01 19 44271760 44271760 T G KCNN4 Missense_Mutation p.T407P 0.51 tolerated(0.21) benign(0.372) TCGA-19-5956-01 19 44276176 44276176 G A KCNN4 Silent p.I265I 0.41 TCGA-19-5956-01 19 44351566 44351566 C A ZNF283 Silent p.T271T 0.21 TCGA-19-5956-01 19 44418794 44418794 G A ZNF45 Missense_Mutation p.A265V 0.32 tolerated(0.77) benign(0.003) TCGA-19-5956-01 19 44470697 44470697 G A ZNF221 Missense_Mutation p.R348H 0.22 tolerated(0.28) benign(0.006) TCGA-19-5956-01 19 44515209 44515209 G T ZNF230 Nonsense_Mutation p.E340* 0.18 TCGA-19-5956-01 19 44536454 44536454 C A ZNF222 Silent p.G249G 0.12 TCGA-19-5956-01 19 44536573 44536573 G A ZNF222 Missense_Mutation p.R289K 0.11 tolerated(0.13) benign(0.24) TCGA-19-5956-01 19 44570464 44570464 C A ZNF223 Silent p.S161S 0.22 TCGA-19-5956-01 19 44635156 44635156 T C ZNF225 Missense_Mutation p.M130T 0.18 tolerated(0.44) benign(0.018) TCGA-19-5956-01 19 44680049 44680049 C A ZNF226 Missense_Mutation p.H212N 0.07 deleterious(0.03) benign(0.108) TCGA-19-5956-01 19 44681371 44681371 C T ZNF226 Silent p.F652F 0.43 TCGA-19-5956-01 19 44740044 44740044 G A ZNF227 Silent p.T487T 0.48 TCGA-19-5956-01 19 44740441 44740441 C T ZNF227 Missense_Mutation p.R620W 0.20 deleterious(0.04) probably_damaging(0.998) TCGA-19-5956-01 19 44768485 44768485 C A ZNF233 5'UTR 0.16 TCGA-19-5956-01 19 44832358 44832358 C T ZNF112 Missense_Mutation p.R657K 0.11 tolerated(0.21) probably_damaging(0.98) TCGA-19-5956-01 19 44833222 44833222 C T ZNF112 Missense_Mutation p.S369N 0.10 tolerated(0.13) benign(0.007) TCGA-19-5956-01 19 44833563 44833563 C A ZNF112 Missense_Mutation p.E255D 0.16 tolerated(0.11) benign(0.035) TCGA-19-5956-01 19 4501205 4501205 C T HDGFRP2 Missense_Mutation p.L603F 0.27 tolerated(0.05) possibly_damaging(0.765) TCGA-19-5956-01 19 4510973 4510973 C A PLIN4 Missense_Mutation p.G986V 0.11 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 19 45322930 45322930 C T BCAM Silent p.C570C 0.11 TCGA-19-5956-01 19 4538114 4538114 G A LRG1 Silent p.F294F 0.27 TCGA-19-5956-01 19 45385511 45385511 C T PVRL2 Silent p.I362I 0.59 TCGA-19-5956-01 19 45563854 45563854 C T CLASRP Missense_Mutation p.R278W 0.38 deleterious(0) probably_damaging(0.951) TCGA-19-5956-01 19 4558119 4558119 C T SEMA6B Missense_Mutation p.R55H 0.28 tolerated(0.05) benign(0) TCGA-19-5956-01 19 45667234 45667234 C T TRAPPC6A Missense_Mutation p.A144T 0.50 tolerated(0.37) benign(0.002) TCGA-19-5956-01 19 45719379 45719379 C A EXOC3L2 Missense_Mutation p.S298I 0.20 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 19 46326680 46326680 G A SYMPK Nonsense_Mutation p.R884* 0.54 TCGA-19-5956-01 19 46652231 46652231 C T IGFL2 5'UTR 0.29 TCGA-19-5956-01 19 46914589 46914589 C A CCDC8 Silent p.R493R 0.36 TCGA-19-5956-01 19 47224019 47224019 C T STRN4 Missense_Mutation p.C708Y 0.22 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 19 47259931 47259931 C T FKRP Silent p.S408S 0.21 TCGA-19-5956-01 19 47425066 47425066 C A ARHGAP35 Missense_Mutation p.P1045H 0.15 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 19 47425447 47425447 G A ARHGAP35 Missense_Mutation p.R1172Q 0.06 tolerated(0.15) possibly_damaging(0.454) TCGA-19-5956-01 19 47440541 47440541 G A ARHGAP35 Silent p.R1234R 0.69 TCGA-19-5956-01 19 47712461 47712461 G A SAE1 Missense_Mutation p.D332N 0.28 tolerated(0.46) benign(0.099) TCGA-19-5956-01 19 47858470 47858470 G A DHX34 Missense_Mutation p.V294I 0.06 tolerated(0.33) benign(0.163) TCGA-19-5956-01 19 47912767 47912767 G T MEIS3 Missense_Mutation p.S212Y 0.16 deleterious(0) benign(0.316) TCGA-19-5956-01 19 4792477 4792477 G A FEM1A Missense_Mutation p.G204E 0.12 tolerated(0.86) benign(0.41) TCGA-19-5956-01 19 4793228 4793228 C T FEM1A Silent p.S454S 0.10 TCGA-19-5956-01 19 48511924 48511924 G T ELSPBP1 5'UTR 0.38 TCGA-19-5956-01 19 48543956 48543956 G T CABP5 Silent p.I48I 0.08 TCGA-19-5956-01 19 48869138 48869138 C T SYNGR4 Silent p.S13S 0.44 TCGA-19-5956-01 19 48869186 48869186 C T SYNGR4 Silent p.F29F 0.12 TCGA-19-5956-01 19 48892903 48892903 G A KDELR1 Silent p.Y86Y 0.23 TCGA-19-5956-01 19 49118658 49118658 G A RPL18 Nonsense_Mutation p.R180* 0.07 TCGA-19-5956-01 19 49131458 49131458 G A SPHK2 Missense_Mutation p.A266T 0.52 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 49143375 49143375 T C CA11 Missense_Mutation p.N150D 0.09 tolerated(0.31) benign(0.01) TCGA-19-5956-01 19 49206228 49206228 G T FUT2 Missense_Mutation p.Q5H 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.635) TCGA-19-5956-01 19 49425640 49425640 C A NUCB1 Missense_Mutation p.L449I 0.08 tolerated_low_confidence(0.44) benign(0) TCGA-19-5956-01 19 49573743 49573743 G T KCNA7 Silent p.I316I 0.26 TCGA-19-5956-01 19 49575473 49575473 C T KCNA7 Missense_Mutation p.A124T 0.32 deleterious(0.04) benign(0.052) TCGA-19-5956-01 19 49671940 49671940 G A TRPM4 Missense_Mutation p.R248H 0.56 tolerated(0.15) benign(0.006) TCGA-19-5956-01 19 49714917 49714917 A G TRPM4 3'UTR 0.58 TCGA-19-5956-01 19 49793344 49793344 C T SLC6A16 3'UTR 0.21 TCGA-19-5956-01 19 49814221 49814221 G T SLC6A16 Silent p.R128R 0.10 TCGA-19-5956-01 19 49973630 49973630 C T ALDH16A1 Missense_Mutation p.P772L 0.27 tolerated(0.32) benign(0.006) TCGA-19-5956-01 19 50027849 50027849 G A FCGRT Silent p.P229P 0.11 TCGA-19-5956-01 19 50156504 50156504 C T SCAF1 Missense_Mutation p.A953V 0.44 unknown(0) TCGA-19-5956-01 19 50158078 50158078 A C SCAF1 Missense_Mutation p.D1190A 0.24 possibly_damaging(0.728) TCGA-19-5956-01 19 50285068 50285068 G A AP2A1 Missense_Mutation p.R41H 0.67 deleterious(0) probably_damaging(0.973) TCGA-19-5956-01 19 50309005 50309005 T C AP2A1 Silent p.D874D 0.30 TCGA-19-5956-01 19 50333827 50333827 G T MED25 Missense_Mutation p.K293N 0.39 tolerated(0.48) probably_damaging(0.987) TCGA-19-5956-01 19 50338286 50338286 G A MED25 Missense_Mutation p.R509H 0.44 deleterious(0) probably_damaging(0.975) TCGA-19-5956-01 19 50360349 50360349 G A PTOV1 Missense_Mutation p.V226I 0.10 deleterious(0.03) possibly_damaging(0.797) TCGA-19-5956-01 19 50384692 50384692 G A TBC1D17 Missense_Mutation p.A163T 0.37 tolerated(0.47) possibly_damaging(0.487) TCGA-19-5956-01 19 50735189 50735189 G A MYH14 Missense_Mutation p.D326N 0.44 tolerated(0.16) benign(0.057) TCGA-19-5956-01 19 50764744 50764744 G T MYH14 Nonsense_Mutation p.E813* 0.10 TCGA-19-5956-01 19 50764768 50764768 G A MYH14 Missense_Mutation p.V821M 0.09 deleterious(0.01) benign(0.15) TCGA-19-5956-01 19 50947010 50947010 T C MYBPC2 Missense_Mutation p.V357A 0.22 tolerated(0.15) benign(0.097) TCGA-19-5956-01 19 50985423 50985423 C T EMC10 Silent p.P232P 0.42 TCGA-19-5956-01 19 51021958 51021958 C T LRRC4B Missense_Mutation p.A338T 0.42 deleterious(0.01) benign(0.355) TCGA-19-5956-01 19 5135442 5135442 G A KDM4B Silent p.P726P 0.13 TCGA-19-5956-01 19 51412073 51412073 G A KLK4 Silent p.I79I 0.54 TCGA-19-5956-01 19 51506509 51506509 G T KLK9 Missense_Mutation p.S204Y 0.16 deleterious(0) probably_damaging(0.93) TCGA-19-5956-01 19 51628912 51628912 G T SIGLEC9 Missense_Mutation p.Q160H 0.49 tolerated(0.07) possibly_damaging(0.532) TCGA-19-5956-01 19 51630336 51630336 G A SIGLEC9 Silent p.Q266Q 0.19 TCGA-19-5956-01 19 51645707 51645707 G A SIGLEC7 Silent p.S27S 0.56 TCGA-19-5956-01 19 51645907 51645907 G A SIGLEC7 Missense_Mutation p.R94Q 0.08 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 19 51729575 51729575 G T CD33 Missense_Mutation p.Q236H 0.10 deleterious(0.02) benign(0.127) TCGA-19-5956-01 19 51827117 51827117 G A IGLON5 Silent p.P120P 0.48 TCGA-19-5956-01 19 52089914 52089914 G T ZNF175 Missense_Mutation p.E110D 0.18 tolerated(0.53) benign(0.187) TCGA-19-5956-01 19 52146496 52146496 G T SIGLEC14 3'UTR 0.24 TCGA-19-5956-01 19 52249665 52249665 C T FPR1 Missense_Mutation p.V195I 0.41 tolerated(1) benign(0.002) TCGA-19-5956-01 19 52327757 52327757 C T FPR3 Silent p.I252I 0.48 TCGA-19-5956-01 19 52380542 52380542 G A ZNF577 Silent p.I92I 0.51 TCGA-19-5956-01 19 52448631 52448631 C A ZNF613 Missense_Mutation p.L499I 0.25 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 19 52496650 52496650 C A ZNF615 Missense_Mutation p.R571L 0.46 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 19 52519579 52519579 C T ZNF614 Silent p.E424E 0.21 TCGA-19-5956-01 19 52520052 52520052 C A ZNF614 Missense_Mutation p.G267C 0.15 deleterious(0.01) possibly_damaging(0.751) TCGA-19-5956-01 19 52569705 52569705 C A ZNF841 Missense_Mutation p.R477I 0.27 tolerated(0.29) possibly_damaging(0.582) TCGA-19-5956-01 19 52618552 52618552 C A ZNF616 Missense_Mutation p.R622I 0.48 tolerated(0.24) benign(0.016) TCGA-19-5956-01 19 52619037 52619037 G A ZNF616 Silent p.T460T 0.20 TCGA-19-5956-01 19 52619219 52619219 G A ZNF616 Nonsense_Mutation p.R400* 0.12 TCGA-19-5956-01 19 52658954 52658954 G T ZNF836 Missense_Mutation p.T661N 0.11 deleterious(0) benign(0.163) TCGA-19-5956-01 19 52659551 52659551 C A ZNF836 Missense_Mutation p.R462I 0.10 tolerated(0.16) benign(0.001) TCGA-19-5956-01 19 52719286 52719286 C A PPP2R1A Silent p.R318R 0.59 TCGA-19-5956-01 19 52725404 52725404 C T PPP2R1A Missense_Mutation p.T524M 0.09 tolerated(0.25) benign(0.15) TCGA-19-5956-01 19 52794513 52794513 G T ZNF766 3'UTR 0.17 TCGA-19-5956-01 19 52941108 52941108 G A ZNF534 Missense_Mutation p.C145Y 0.37 tolerated(0.64) benign(0.137) TCGA-19-5956-01 19 52955107 52955107 G A ZNF578 5'Flank 0.10 TCGA-19-5956-01 19 53056467 53056467 G T ZNF808 Missense_Mutation p.D100Y 0.19 deleterious(0.04) possibly_damaging(0.522) TCGA-19-5956-01 19 53057674 53057674 G A ZNF808 Missense_Mutation p.R502H 0.36 tolerated(0.18) benign(0.011) TCGA-19-5956-01 19 53058636 53058636 G T ZNF808 Nonsense_Mutation p.E823* 0.21 TCGA-19-5956-01 19 53085685 53085685 C T ZNF701 Nonsense_Mutation p.R191* 0.47 TCGA-19-5956-01 19 53207864 53207864 C A ZNF611 3'UTR 0.21 TCGA-19-5956-01 19 53219096 53219096 C T ZNF611 Missense_Mutation p.A18T 0.44 deleterious(0.05) benign(0.173) TCGA-19-5956-01 19 53269153 53269153 A G ZNF600 Missense_Mutation p.F619S 0.06 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 19 53303449 53303449 G A ZNF28 Missense_Mutation p.P550L 0.18 deleterious(0.05) probably_damaging(0.997) TCGA-19-5956-01 19 53344449 53344449 T C ZNF468 Silent p.R366R 0.08 TCGA-19-5956-01 19 53453258 53453258 C A ZNF816 Missense_Mutation p.E590D 0.28 deleterious(0.02) benign(0.14) TCGA-19-5956-01 19 53454268 53454268 C A ZNF816 Nonsense_Mutation p.E254* 0.24 TCGA-19-5956-01 19 53454718 53454718 G A ZNF816 Missense_Mutation p.P104S 0.18 tolerated(0.1) benign(0.103) TCGA-19-5956-01 19 53571933 53571933 C A ZNF160 Missense_Mutation p.E618D 0.29 deleterious(0.01) benign(0.014) TCGA-19-5956-01 19 53577434 53577434 C A ZNF160 Missense_Mutation p.R77I 0.39 tolerated(0.07) benign(0) TCGA-19-5956-01 19 53644553 53644553 C A ZNF347 Nonsense_Mutation p.E511* 0.43 TCGA-19-5956-01 19 53644558 53644558 G T ZNF347 Missense_Mutation p.T509N 0.41 deleterious(0.01) possibly_damaging(0.653) TCGA-19-5956-01 19 53668482 53668482 G A ZNF665 Nonsense_Mutation p.R421* 0.14 TCGA-19-5956-01 19 53668726 53668726 G A ZNF665 Silent p.I339I 0.35 TCGA-19-5956-01 19 53762568 53762568 A G VN1R2 Missense_Mutation p.I314V 0.21 deleterious(0.02) benign(0.205) TCGA-19-5956-01 19 53770792 53770792 C A VN1R4 Missense_Mutation p.D43Y 0.12 deleterious(0.01) possibly_damaging(0.817) TCGA-19-5956-01 19 53885064 53885064 A G ZNF525 Missense_Mutation p.Y411C 0.08 deleterious(0.01) possibly_damaging(0.534) TCGA-19-5956-01 19 53885527 53885527 C A ZNF525 3'UTR 0.15 TCGA-19-5956-01 19 53889556 53889556 C T ZNF525 3'Flank 0.47 TCGA-19-5956-01 19 53905353 53905353 C A ZNF765 Missense_Mutation p.F17L 0.15 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 53957946 53957946 C T ZNF761 RNA 0.09 TCGA-19-5956-01 19 53958304 53958304 T G ZNF761 RNA 0.25 TCGA-19-5956-01 19 53994647 53994647 A G ZNF813 Silent p.E387E 0.48 TCGA-19-5956-01 19 54072623 54072623 C A ZNF331 5'UTR 0.19 TCGA-19-5956-01 19 54074947 54074947 C T ZNF331 Silent p.D33D 0.48 TCGA-19-5956-01 19 54137838 54137838 C T DPRX Silent p.L28L 0.46 TCGA-19-5956-01 19 54175282 54175282 T C MIR1323 RNA 0.50 TCGA-19-5956-01 19 54182272 54182272 C T MIR515-1 RNA 0.44 TCGA-19-5956-01 19 54209539 54209539 C T MIR526A1 RNA 0.10 TCGA-19-5956-01 19 54212027 54212027 A G MIR518C RNA 0.24 TCGA-19-5956-01 19 54216608 54216608 C A MIR519D RNA 0.17 TCGA-19-5956-01 19 54264467 54264467 C T MIR516A2 RNA 0.30 TCGA-19-5956-01 19 54314024 54314024 C T NLRP12 Missense_Mutation p.D297N 0.12 deleterious(0.03) possibly_damaging(0.527) TCGA-19-5956-01 19 54327413 54327413 C A NLRP12 Missense_Mutation p.G6C 0.41 deleterious_low_confidence(0.04) benign(0.43) TCGA-19-5956-01 19 5455677 5455677 G A ZNRF4 Missense_Mutation p.G59R 0.50 deleterious_low_confidence(0) benign(0.007) TCGA-19-5956-01 19 54622003 54622003 A C PRPF31 Missense_Mutation p.K76N 0.21 tolerated(0.23) benign(0.025) TCGA-19-5956-01 19 54657432 54657432 C A CNOT3 Intron 0.30 TCGA-19-5956-01 19 54662056 54662056 G A LENG1 Silent p.G92G 0.46 TCGA-19-5956-01 19 54673399 54673399 C A TMC4 Splice_Site p.X104_splice 0.15 TCGA-19-5956-01 19 54696153 54696153 G A TSEN34 Missense_Mutation p.R225K 0.26 tolerated(0.31) benign(0.047) TCGA-19-5956-01 19 54705394 54705394 T C RPS9 Missense_Mutation p.V46A 0.16 tolerated(0.11) benign(0.148) TCGA-19-5956-01 19 54710298 54710298 C T RPS9 Silent p.H125H 0.48 TCGA-19-5956-01 19 54720994 54720994 G A LILRB3 Missense_Mutation p.P623S 0.45 tolerated(0.17) possibly_damaging(0.84) TCGA-19-5956-01 19 54724547 54724547 G A LILRB3 Missense_Mutation p.S370L 0.11 tolerated(0.06) possibly_damaging(0.476) TCGA-19-5956-01 19 54760419 54760419 G A LILRB5 Silent p.Y96Y 0.44 TCGA-19-5956-01 19 54778673 54778673 G T LILRB2 Missense_Mutation p.S554Y 0.21 tolerated(0.07) probably_damaging(0.962) TCGA-19-5956-01 19 54802094 54802094 G T LILRA3 Missense_Mutation p.S365Y 0.44 deleterious(0.01) benign(0.195) TCGA-19-5956-01 19 54868105 54868105 T G LAIR1 Missense_Mutation p.K193T 0.16 deleterious(0) probably_damaging(0.932) TCGA-19-5956-01 19 54930397 54930397 C T TTYH1 Silent p.P74P 0.20 TCGA-19-5956-01 19 54973231 54973231 C A LENG9 3'UTR 0.15 TCGA-19-5956-01 19 55014083 55014083 G A LAIR2 5'UTR 0.23 TCGA-19-5956-01 19 55044014 55044014 C A KIR3DX1 5'UTR 0.47 TCGA-19-5956-01 19 55044967 55044967 C A KIR3DX1 Missense_Mutation p.F29L 0.43 tolerated(0.29) benign(0.001) TCGA-19-5956-01 19 55086411 55086411 G A LILRA2 Missense_Mutation p.R189H 0.06 tolerated(1) benign(0.201) TCGA-19-5956-01 19 55107396 55107396 C T LILRA1 Silent p.I318I 0.43 TCGA-19-5956-01 19 55144002 55144002 C T LILRB1 Missense_Mutation p.A250V 0.49 tolerated(1) benign(0) TCGA-19-5956-01 19 55144006 55144006 C T LILRB1 Silent p.G251G 0.09 TCGA-19-5956-01 19 55146178 55146178 C A LILRB1 Missense_Mutation p.L484I 0.09 tolerated(0.1) benign(0.089) TCGA-19-5956-01 19 55179405 55179405 C A LILRB4 Missense_Mutation p.P428T 0.16 deleterious(0.01) possibly_damaging(0.878) TCGA-19-5956-01 19 55220405 55220405 C T AC098784.2 3'Flank 0.32 TCGA-19-5956-01 19 55221897 55221897 C T AC098784.2 3'Flank 0.55 TCGA-19-5956-01 19 55349187 55349187 A G KIR2DS4 Missense_Mutation p.H76R 0.10 tolerated_low_confidence(0.37) benign(0.001) TCGA-19-5956-01 19 55378299 55378299 C A KIR3DL2 3'UTR 0.29 TCGA-19-5956-01 19 55401110 55401110 T C FCAR Missense_Mutation p.W249R 0.21 tolerated(0.13) benign(0.059) TCGA-19-5956-01 19 55401125 55401125 G A FCAR Missense_Mutation p.A254T 0.21 tolerated(0.11) benign(0.419) TCGA-19-5956-01 19 55453011 55453011 C A NLRP7 Missense_Mutation p.K23N 0.14 tolerated(0.26) benign(0.175) TCGA-19-5956-01 19 55526226 55526226 C A GP6 Missense_Mutation p.D363Y 0.30 deleterious_low_confidence(0) probably_damaging(0.934) TCGA-19-5956-01 19 55556543 55556543 C T RDH13 Missense_Mutation p.E299K 0.49 tolerated(0.38) benign(0.004) TCGA-19-5956-01 19 55817715 55817715 C A BRSK1 Silent p.R662R 0.11 TCGA-19-5956-01 19 56104111 56104111 G A FIZ1 Missense_Mutation p.A399V 0.26 tolerated(0.14) benign(0.002) TCGA-19-5956-01 19 56180457 56180457 G A U2AF2 Silent p.A318A 0.09 TCGA-19-5956-01 19 56203236 56203236 G A EPN1 Silent p.S379S 0.20 TCGA-19-5956-01 19 56223300 56223300 G A NLRP9 Silent p.D903D 0.42 TCGA-19-5956-01 19 56244591 56244591 G T NLRP9 Silent p.L202L 0.55 TCGA-19-5956-01 19 56319320 56319320 G A NLRP11 Silent p.S634S 0.14 TCGA-19-5956-01 19 56329524 56329524 G T NLRP11 Missense_Mutation p.S6Y 0.25 deleterious(0.02) probably_damaging(0.936) TCGA-19-5956-01 19 56369050 56369050 G T NLRP4 Missense_Mutation p.K97N 0.20 tolerated(0.16) benign(0.003) TCGA-19-5956-01 19 56369527 56369527 G A NLRP4 Silent p.P256P 0.15 TCGA-19-5956-01 19 56370449 56370449 G A NLRP4 Missense_Mutation p.A564T 0.10 tolerated(0.22) benign(0.097) TCGA-19-5956-01 19 56410239 56410239 G T NLRP13 Missense_Mutation p.H952N 0.17 tolerated(0.41) benign(0.106) TCGA-19-5956-01 19 56423542 56423542 G T NLRP13 Silent p.S547S 0.23 TCGA-19-5956-01 19 56424454 56424454 G T NLRP13 Silent p.T243T 0.21 TCGA-19-5956-01 19 56482001 56482001 A C NLRP8 Missense_Mutation p.K825Q 0.13 tolerated(0.58) benign(0.077) TCGA-19-5956-01 19 56490910 56490910 G T NLRP8 Missense_Mutation p.K1009N 0.25 tolerated(0.34) benign(0.122) TCGA-19-5956-01 19 56539053 56539053 A G NLRP5 Missense_Mutation p.D485G 0.26 tolerated(0.24) benign(0.002) TCGA-19-5956-01 19 56539073 56539073 G A NLRP5 Missense_Mutation p.A492T 0.27 tolerated(0.43) benign(0.008) TCGA-19-5956-01 19 56552419 56552419 G A NLRP5 Missense_Mutation p.R973Q 0.20 tolerated(0.19) benign(0.117) TCGA-19-5956-01 19 56572835 56572835 G A NLRP5 Missense_Mutation p.V1182I 0.14 tolerated(0.34) benign(0.075) TCGA-19-5956-01 19 56733114 56733114 C T ZSCAN5A Missense_Mutation p.E441K 0.09 tolerated(0.92) benign(0.014) TCGA-19-5956-01 19 56733647 56733647 G T ZSCAN5A Missense_Mutation p.S263Y 0.41 tolerated(0.52) benign(0.261) TCGA-19-5956-01 19 56896363 56896363 C A ZNF582 Missense_Mutation p.Q141H 0.19 deleterious(0.04) benign(0) TCGA-19-5956-01 19 56935000 56935000 G A ZNF583 Missense_Mutation p.E325K 0.52 tolerated(0.36) probably_damaging(0.998) TCGA-19-5956-01 19 56952901 56952901 C T ZNF667 Missense_Mutation p.R488Q 0.39 tolerated(0.51) probably_damaging(0.996) TCGA-19-5956-01 19 56953301 56953301 C T ZNF667 Missense_Mutation p.E355K 0.41 tolerated(0.29) benign(0.005) TCGA-19-5956-01 19 5705893 5705893 C T LONP1 Silent p.E419E 0.21 TCGA-19-5956-01 19 5705975 5705975 C T LONP1 Missense_Mutation p.R392H 0.13 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 19 57061948 57061948 G A ZFP28 Missense_Mutation p.R291Q 0.20 tolerated(0.56) benign(0.001) TCGA-19-5956-01 19 57065121 57065121 G T ZFP28 Missense_Mutation p.D323Y 0.53 deleterious(0) possibly_damaging(0.646) TCGA-19-5956-01 19 57086097 57086097 G A ZNF470 Missense_Mutation p.C93Y 0.12 tolerated(0.99) benign(0.001) TCGA-19-5956-01 19 5713246 5713246 G A LONP1 Silent p.V179V 0.46 TCGA-19-5956-01 19 57133957 57133957 C T ZNF71 Silent p.G434G 0.14 TCGA-19-5956-01 19 57175096 57175096 G A ZNF835 Nonsense_Mutation p.R491* 0.17 TCGA-19-5956-01 19 57327564 57327564 G A PEG3 Missense_Mutation p.A749V 0.44 tolerated(0.08) benign(0.149) TCGA-19-5956-01 19 57328793 57328793 C T PEG3 Silent p.Q339Q 0.42 TCGA-19-5956-01 19 57641644 57641644 C A USP29 Missense_Mutation p.S534Y 0.14 tolerated(1) benign(0) TCGA-19-5956-01 19 57642104 57642104 A G USP29 Silent p.Q687Q 0.07 TCGA-19-5956-01 19 57723168 57723168 G A ZNF264 Missense_Mutation p.E235K 0.24 deleterious(0.02) benign(0.333) TCGA-19-5956-01 19 57765729 57765729 C T ZNF805 Silent p.I514I 0.36 TCGA-19-5956-01 19 57835164 57835164 C A ZNF543 Missense_Mutation p.L45I 0.54 deleterious(0) possibly_damaging(0.902) TCGA-19-5956-01 19 57839813 57839813 G A ZNF543 Missense_Mutation p.R328Q 0.24 tolerated(0.73) possibly_damaging(0.621) TCGA-19-5956-01 19 57840400 57840400 C T ZNF543 Nonsense_Mutation p.R524* 0.51 TCGA-19-5956-01 19 57955859 57955859 T C ZNF749 Missense_Mutation p.V448A 0.27 tolerated(0.85) possibly_damaging(0.822) TCGA-19-5956-01 19 58132139 58132139 A G ZNF134 Missense_Mutation p.T218A 0.08 tolerated(0.1) probably_damaging(0.998) TCGA-19-5956-01 19 58132766 58132766 C A ZNF134 Missense_Mutation p.L427I 0.11 deleterious_low_confidence(0.01) benign(0.283) TCGA-19-5956-01 19 58187761 58187761 T C ZSCAN4 Missense_Mutation p.I83T 0.14 deleterious(0.01) probably_damaging(0.918) TCGA-19-5956-01 19 58198752 58198752 A C ZNF551 Missense_Mutation p.K370T 0.11 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 19 58213379 58213379 T G ZNF154 Missense_Mutation p.N313T 0.11 tolerated(0.29) benign(0.41) TCGA-19-5956-01 19 58265258 58265258 C A ZNF776 Missense_Mutation p.H254N 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 19 58265270 58265270 C T ZNF776 Missense_Mutation p.R258C 0.14 deleterious(0) benign(0.022) TCGA-19-5956-01 19 58265528 58265528 G T ZNF776 Nonsense_Mutation p.G344* 0.59 TCGA-19-5956-01 19 58288019 58288019 A C ZNF586 Missense_Mutation p.T49P 0.38 deleterious(0.01) benign(0.079) TCGA-19-5956-01 19 58290380 58290380 G T ZNF586 Missense_Mutation p.R142I 0.19 deleterious(0.03) possibly_damaging(0.512) TCGA-19-5956-01 19 58290629 58290629 G A ZNF586 Missense_Mutation p.R225K 0.41 tolerated(0.12) benign(0.159) TCGA-19-5956-01 19 5831808 5831808 C A FUT6 Missense_Mutation p.E257D 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 19 58350495 58350495 C A ZNF587B Missense_Mutation p.N47K 0.28 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 19 58350508 58350508 T C ZNF587B Missense_Mutation p.S52P 0.14 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 19 58352378 58352378 A G ZNF587B Silent p.G112G 0.14 TCGA-19-5956-01 19 58370635 58370635 A C ZNF587 Missense_Mutation p.Q285H 0.45 tolerated(0.39) possibly_damaging(0.522) TCGA-19-5956-01 19 58453597 58453597 C A ZNF256 Missense_Mutation p.K193N 0.31 deleterious(0.02) benign(0.155) TCGA-19-5956-01 19 58489568 58489568 C A ZNF606 3'UTR 0.27 TCGA-19-5956-01 19 58500086 58500086 G A ZNF606 Missense_Mutation p.P61S 0.27 tolerated(0.97) possibly_damaging(0.478) TCGA-19-5956-01 19 58579504 58579504 A G ZNF135 Missense_Mutation p.E575G 0.09 deleterious(0.03) possibly_damaging(0.458) TCGA-19-5956-01 19 58596668 58596668 G A ZSCAN18 Missense_Mutation p.T362M 0.30 tolerated(0.56) benign(0.002) TCGA-19-5956-01 19 58597581 58597581 G A ZSCAN18 Silent p.L322L 0.22 TCGA-19-5956-01 19 58639148 58639148 G A ZNF329 3'UTR 0.24 TCGA-19-5956-01 19 58640203 58640203 C T ZNF329 Missense_Mutation p.R223Q 0.27 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 19 58697121 58697121 G T ZNF274 Nonsense_Mutation p.E26* 0.09 TCGA-19-5956-01 19 58755344 58755344 G T ZNF544 5'UTR 0.50 TCGA-19-5956-01 19 58772414 58772414 G T ZNF544 Nonsense_Mutation p.E148* 0.11 TCGA-19-5956-01 19 58806891 58806891 G T ZNF8 Nonsense_Mutation p.E573* 0.09 TCGA-19-5956-01 19 58850449 58850449 C T ZSCAN22 Silent p.D411D 0.11 TCGA-19-5956-01 19 58864073 58864073 G A A1BG Intron 0.15 TCGA-19-5956-01 19 58899533 58899533 C T RPS5 Missense_Mutation p.A10V 0.12 tolerated(0.34) benign(0) TCGA-19-5956-01 19 58967441 58967441 G A ZNF324B Missense_Mutation p.R377H 0.40 deleterious(0.02) probably_damaging(0.988) TCGA-19-5956-01 19 58982689 58982689 G A ZNF324 Missense_Mutation p.R277H 0.45 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 19 58992117 58992117 G A ZNF446 3'UTR 0.31 TCGA-19-5956-01 19 59028723 59028723 C T ZBTB45 Silent p.A106A 0.62 TCGA-19-5956-01 19 59062957 59062957 G A CHMP2A 3'UTR 0.06 TCGA-19-5956-01 19 603875 603875 G A HCN2 Missense_Mutation p.A322T 0.24 tolerated(0.06) benign(0.187) TCGA-19-5956-01 19 6306787 6306787 G A ACER1 Missense_Mutation p.R245W 0.19 deleterious(0.02) probably_damaging(0.939) TCGA-19-5956-01 19 6374343 6374343 C A ALKBH7 Missense_Mutation p.L112M 0.25 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 6429828 6429828 G T SLC25A41 Missense_Mutation p.F177L 0.23 tolerated(1) benign(0.039) TCGA-19-5956-01 19 6454466 6454466 G T SLC25A23 Missense_Mutation p.N221K 0.20 tolerated(0.23) benign(0.309) TCGA-19-5956-01 19 6468127 6468127 G T DENND1C Silent p.P598P 0.17 TCGA-19-5956-01 19 6477439 6477439 G T DENND1C Missense_Mutation p.L133M 0.43 deleterious(0.02) possibly_damaging(0.658) TCGA-19-5956-01 19 6496006 6496006 G A TUBB4A Silent p.S168S 0.45 TCGA-19-5956-01 19 6686239 6686239 C T C3 Missense_Mutation p.A1236T 0.18 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 19 6697791 6697791 C A C3 Missense_Mutation p.D819Y 0.19 deleterious(0) probably_damaging(0.93) TCGA-19-5956-01 19 6712412 6712412 G A C3 Silent p.F375F 0.51 TCGA-19-5956-01 19 6713460 6713460 G A C3 Silent p.G278G 0.48 TCGA-19-5956-01 19 6828892 6828892 C T VAV1 Missense_Mutation p.R416W 0.22 deleterious(0) probably_damaging(0.974) TCGA-19-5956-01 19 7083273 7083273 C T ZNF557 Missense_Mutation p.R271C 0.53 deleterious(0) benign(0.272) TCGA-19-5956-01 19 7083385 7083385 C A ZNF557 Missense_Mutation p.S308Y 0.22 deleterious(0.01) benign(0.265) TCGA-19-5956-01 19 7083730 7083730 C T ZNF557 Missense_Mutation p.T423M 0.47 tolerated(0.07) benign(0.001) TCGA-19-5956-01 19 7083776 7083776 G T ZNF557 3'UTR 0.09 TCGA-19-5956-01 19 7267804 7267804 C T INSR Silent p.T68T 0.34 TCGA-19-5956-01 19 7511996 7511996 C A ARHGEF18 Missense_Mutation p.A372D 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 19 7527067 7527067 G A ARHGEF18 Missense_Mutation p.A640T 0.11 tolerated(0.27) benign(0.014) TCGA-19-5956-01 19 7543214 7543214 C T PEX11G Silent p.T159T 0.43 TCGA-19-5956-01 19 7607475 7607475 C T PNPLA6 Silent p.F436F 0.48 TCGA-19-5956-01 19 7625961 7625961 C T PNPLA6 Missense_Mutation p.P1303L 0.20 deleterious(0.02) benign(0.413) TCGA-19-5956-01 19 7688656 7688656 C T XAB2 Nonsense_Mutation p.W360* 0.44 TCGA-19-5956-01 19 7755336 7755336 C T FCER2 Missense_Mutation p.D193N 0.22 tolerated(0.27) benign(0.012) TCGA-19-5956-01 19 7763261 7763261 T G FCER2 Missense_Mutation p.E57D 0.17 tolerated(0.09) probably_damaging(0.938) TCGA-19-5956-01 19 7809093 7809093 G A CD209 Silent p.L305L 0.48 TCGA-19-5956-01 19 7810925 7810925 G A CD209 Missense_Mutation p.A76V 0.17 tolerated(0.24) benign(0.002) TCGA-19-5956-01 19 7965355 7965355 C T LRRC8E Missense_Mutation p.R650W 0.12 deleterious(0.01) probably_damaging(0.993) TCGA-19-5956-01 19 8002958 8002958 C A TIMM44 Missense_Mutation p.R89I 0.09 deleterious(0.03) benign(0.004) TCGA-19-5956-01 19 8152013 8152013 G A FBN3 Silent p.C2234C 0.11 TCGA-19-5956-01 19 8203097 8203097 G A FBN3 Missense_Mutation p.P377S 0.09 tolerated(0.23) benign(0.005) TCGA-19-5956-01 19 8468382 8468382 C T RAB11B Silent p.S199S 0.49 TCGA-19-5956-01 19 8528503 8528503 G A HNRNPM Missense_Mutation p.S124N 0.51 tolerated(0.31) benign(0.114) TCGA-19-5956-01 19 8550619 8550619 G A HNRNPM Missense_Mutation p.R436H 0.10 tolerated(0.08) benign(0.044) TCGA-19-5956-01 19 8551917 8551917 G A HNRNPM Missense_Mutation p.D663N 0.26 tolerated(0.07) possibly_damaging(0.861) TCGA-19-5956-01 19 8555583 8555583 G A PRAM1 Missense_Mutation p.R601C 0.50 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 19 8564178 8564178 C A PRAM1 Nonsense_Mutation p.E172* 0.13 TCGA-19-5956-01 19 9013907 9013907 G A MUC16 Missense_Mutation p.P12828L 0.41 possibly_damaging(0.552) TCGA-19-5956-01 19 901452 901452 G A R3HDM4 Silent p.A107A 0.16 TCGA-19-5956-01 19 9048722 9048722 C T MUC16 Missense_Mutation p.G10970E 0.18 benign(0.016) TCGA-19-5956-01 19 9048809 9048809 G T MUC16 Missense_Mutation p.S10941Y 0.08 benign(0.039) TCGA-19-5956-01 19 9049989 9049989 C A MUC16 Nonsense_Mutation p.E10548* 0.10 TCGA-19-5956-01 19 9057477 9057477 C A MUC16 Missense_Mutation p.R9990I 0.45 unknown(0) TCGA-19-5956-01 19 9060220 9060220 C A MUC16 Nonsense_Mutation p.E9076* 0.21 TCGA-19-5956-01 19 9063260 9063260 C A MUC16 Silent p.G8062G 0.19 TCGA-19-5956-01 19 9063291 9063291 G T MUC16 Missense_Mutation p.P8052H 0.08 unknown(0) TCGA-19-5956-01 19 9063943 9063943 C T MUC16 Missense_Mutation p.E7835K 0.27 unknown(0) TCGA-19-5956-01 19 9070564 9070564 T A MUC16 Missense_Mutation p.T5628S 0.26 unknown(0) TCGA-19-5956-01 19 9071403 9071403 G T MUC16 Missense_Mutation p.S5348Y 0.17 unknown(0) TCGA-19-5956-01 19 9073597 9073597 C A MUC16 Nonsense_Mutation p.E4617* 0.13 TCGA-19-5956-01 19 9076865 9076865 G A MUC16 Silent p.I3527I 0.23 TCGA-19-5956-01 19 9084868 9084868 C A MUC16 Missense_Mutation p.R2316I 0.40 unknown(0) TCGA-19-5956-01 19 9087508 9087508 G T MUC16 Missense_Mutation p.S1436Y 0.28 unknown(0) TCGA-19-5956-01 19 9088127 9088127 C T MUC16 Missense_Mutation p.E1230K 0.22 unknown(0) TCGA-19-5956-01 19 9088709 9088709 C T MUC16 Missense_Mutation p.A1036T 0.47 unknown(0) TCGA-19-5956-01 19 9204205 9204205 C A OR1M1 Silent p.P95P 0.13 TCGA-19-5956-01 19 9237209 9237209 G T OR7G3 Missense_Mutation p.L140I 0.09 deleterious(0.02) benign(0.025) TCGA-19-5956-01 19 9237609 9237609 G T OR7G3 Missense_Mutation p.F6L 0.50 tolerated(0.34) benign(0) TCGA-19-5956-01 19 9271182 9271182 C A ZNF317 Missense_Mutation p.F287L 0.21 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 19 9296961 9296961 C T OR7D2 Silent p.F168F 0.22 TCGA-19-5956-01 19 9325504 9325504 C A OR7D4 Nonsense_Mutation p.E4* 0.21 TCGA-19-5956-01 19 9406312 9406312 G T ZNF699 Missense_Mutation p.L590M 0.10 tolerated(0.13) possibly_damaging(0.867) TCGA-19-5956-01 19 9407100 9407100 C A ZNF699 Missense_Mutation p.R327I 0.37 tolerated(0.12) benign(0.076) TCGA-19-5956-01 19 9453175 9453175 G T ZNF559 Nonsense_Mutation p.E350* 0.32 TCGA-19-5956-01 19 9453601 9453601 C T ZNF559 Missense_Mutation p.P492S 0.10 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 19 9524235 9524235 G A ZNF266 Missense_Mutation p.R456W 0.11 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 19 9578691 9578691 C T ZNF560 Missense_Mutation p.R311K 0.47 tolerated(0.93) benign(0.364) TCGA-19-5956-01 19 9639096 9639096 C A ZNF426 Missense_Mutation p.S542I 0.29 tolerated(0.14) benign(0.026) TCGA-19-5956-01 19 9641697 9641697 G A ZNF426 Silent p.D124D 0.20 TCGA-19-5956-01 19 9646902 9646902 C T ZNF426 Missense_Mutation p.A3T 0.17 deleterious(0.03) benign(0) TCGA-19-5956-01 19 9646955 9646955 C A ZNF426 5'UTR 0.24 TCGA-19-5956-01 19 9676962 9676962 C A ZNF121 Missense_Mutation p.R276I 0.29 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 19 9721028 9721028 T C ZNF561 Missense_Mutation p.N437D 0.07 deleterious(0.04) benign(0.419) TCGA-19-5956-01 19 9763815 9763815 C T ZNF562 Missense_Mutation p.R364Q 0.54 deleterious(0.05) possibly_damaging(0.558) TCGA-19-5956-01 1 100133303 100133303 C A PALMD Missense_Mutation p.L78I 0.32 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 100368332 100368332 C T AGL Nonsense_Mutation p.R1228* 0.23 TCGA-19-5956-01 1 100525460 100525460 G A HIAT1 Silent p.P90P 0.50 TCGA-19-5956-01 1 100573424 100573424 T C SASS6 Missense_Mutation p.D333G 0.19 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 100740390 100740390 C T RTCA Missense_Mutation p.P175S 0.37 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 1 101186061 101186061 G T VCAM1 Nonsense_Mutation p.E32* 0.19 TCGA-19-5956-01 1 103343609 103343609 C T COL11A1 Missense_Mutation p.G1796E 0.28 unknown(0) TCGA-19-5956-01 1 103540276 103540276 C A COL11A1 Missense_Mutation p.K183N 0.21 possibly_damaging(0.842) TCGA-19-5956-01 1 10384817 10384817 C T KIF1B Nonsense_Mutation p.Q801* 0.18 TCGA-19-5956-01 1 104112451 104112451 G T AMY2B Intron 0.17 TCGA-19-5956-01 1 104116374 104116374 G T AMY2B Missense_Mutation p.E186D 0.38 tolerated(0.09) benign(0.001) TCGA-19-5956-01 1 104120151 104120151 G T AMY2B Missense_Mutation p.V381L 0.09 tolerated(0.39) benign(0.001) TCGA-19-5956-01 1 104160706 104160706 G T AMY2A Missense_Mutation p.R100I 0.20 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 1 10436609 10436609 G A KIF1B Silent p.K1759K 0.18 TCGA-19-5956-01 1 10710809 10710809 G A CASZ1 Silent p.N940N 0.08 TCGA-19-5956-01 1 10713843 10713843 G A CASZ1 Silent p.A757A 0.46 TCGA-19-5956-01 1 108145748 108145748 C T VAV3 Missense_Mutation p.E685K 0.17 tolerated(0.65) probably_damaging(0.921) TCGA-19-5956-01 1 109197406 109197406 C T HENMT1 Silent p.L110L 0.48 TCGA-19-5956-01 1 109202500 109202500 C A HENMT1 Nonsense_Mutation p.E3* 0.31 TCGA-19-5956-01 1 109394720 109394720 C T AKNAD1 Silent p.T189T 0.10 TCGA-19-5956-01 1 109477322 109477322 T C CLCC1 Silent p.G542G 0.49 TCGA-19-5956-01 1 109649259 109649259 C A C1orf194 Nonsense_Mutation p.E101* 0.46 TCGA-19-5956-01 1 109794602 109794602 C T CELSR2 Missense_Mutation p.A634V 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 109795698 109795698 G A CELSR2 Silent p.T999T 0.18 TCGA-19-5956-01 1 109812590 109812590 C T CELSR2 Silent p.Y2381Y 0.08 TCGA-19-5956-01 1 109814086 109814086 C T CELSR2 Silent p.S2585S 0.45 TCGA-19-5956-01 1 110019512 110019512 C T SYPL2 Silent p.I123I 0.41 TCGA-19-5956-01 1 110033814 110033814 G A ATXN7L2 Silent p.P543P 0.58 TCGA-19-5956-01 1 110033843 110033843 C A ATXN7L2 Missense_Mutation p.A553D 0.36 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 1 11008311 11008311 C A C1orf127 Missense_Mutation p.Q627H 0.27 tolerated(0.07) probably_damaging(0.983) TCGA-19-5956-01 1 11015101 11015101 C A C1orf127 Missense_Mutation p.E307D 0.50 deleterious(0.01) probably_damaging(0.953) TCGA-19-5956-01 1 110155416 110155416 T C GNAT2 Missense_Mutation p.D26G 0.44 deleterious(0.05) possibly_damaging(0.534) TCGA-19-5956-01 1 110555520 110555520 T C AHCYL1 Missense_Mutation p.V160A 0.19 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 110561050 110561050 C T AHCYL1 Silent p.I393I 0.31 TCGA-19-5956-01 1 110594485 110594485 A C STRIP1 Missense_Mutation p.N748H 0.24 tolerated(0.06) possibly_damaging(0.549) TCGA-19-5956-01 1 110655715 110655715 C A UBL4B 3'UTR 0.21 TCGA-19-5956-01 1 110754427 110754427 C T KCNC4 Silent p.V102V 0.31 TCGA-19-5956-01 1 11076996 11076996 C T TARDBP Missense_Mutation p.P112S 0.08 tolerated(0.06) benign(0.124) TCGA-19-5956-01 1 11082800 11082800 C A TARDBP 3'UTR 0.39 TCGA-19-5956-01 1 110883070 110883070 G T RBM15 Missense_Mutation p.R348M 0.11 deleterious(0.01) benign(0.275) TCGA-19-5956-01 1 111060024 111060024 G A KCNA10 Silent p.Y462Y 0.16 TCGA-19-5956-01 1 111061172 111061172 C A KCNA10 Missense_Mutation p.V80F 0.10 tolerated(0.49) benign(0) TCGA-19-5956-01 1 111146890 111146890 A G KCNA2 Missense_Mutation p.V172A 0.18 deleterious(0.02) benign(0.003) TCGA-19-5956-01 1 111495198 111495198 G T LRIF1 Missense_Mutation p.S103Y 0.40 deleterious(0.02) probably_damaging(0.919) TCGA-19-5956-01 1 111506283 111506283 G T LRIF1 Missense_Mutation p.L10M 0.32 deleterious_low_confidence(0.01) possibly_damaging(0.82) TCGA-19-5956-01 1 111770291 111770291 C T CHI3L2 5'UTR 0.41 TCGA-19-5956-01 1 111778647 111778647 G T CHI3L2 Missense_Mutation p.D203Y 0.40 tolerated(1) benign(0.004) TCGA-19-5956-01 1 111824282 111824282 C A CHIAP2 RNA 0.26 TCGA-19-5956-01 1 111857906 111857906 T G CHIA Missense_Mutation p.V110G 0.07 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 111957666 111957666 G A OVGP1 Missense_Mutation p.S486F 0.13 tolerated_low_confidence(0.12) benign(0.001) TCGA-19-5956-01 1 111963909 111963909 C T OVGP1 Missense_Mutation p.A298T 0.13 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 112298434 112298434 G A DDX20 5'UTR 0.11 TCGA-19-5956-01 1 112319889 112319889 C T KCND3 Missense_Mutation p.E509K 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.635) TCGA-19-5956-01 1 113212701 113212701 G A CAPZA1 Missense_Mutation p.D270N 0.13 tolerated(0.08) benign(0.3) TCGA-19-5956-01 1 113232645 113232645 C T MOV10 Missense_Mutation p.T254I 0.46 deleterious(0.01) benign(0.005) TCGA-19-5956-01 1 113234360 113234360 C T MOV10 Missense_Mutation p.L304F 0.39 tolerated(0.1) benign(0.004) TCGA-19-5956-01 1 113471762 113471762 C T SLC16A1 Missense_Mutation p.E57K 0.47 tolerated(0.06) benign(0.066) TCGA-19-5956-01 1 113655251 113655251 G A LRIG2 Missense_Mutation p.R650H 0.51 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 1 113666804 113666804 G A LRIG2 3'UTR 0.45 TCGA-19-5956-01 1 1140856 1140856 G A TNFRSF18 Silent p.S68S 0.11 TCGA-19-5956-01 1 114240206 114240206 G A PHTF1 3'UTR 0.60 TCGA-19-5956-01 1 114308618 114308618 G T RSBN1 Nonsense_Mutation p.S798* 0.22 TCGA-19-5956-01 1 114438978 114438978 G A AP4B1 Missense_Mutation p.A471V 0.48 tolerated(0.13) benign(0.008) TCGA-19-5956-01 1 114497272 114497272 G A HIPK1 Splice_Site p.X401_splice 0.38 TCGA-19-5956-01 1 114523080 114523080 G A OLFML3 Missense_Mutation p.D81N 0.26 deleterious(0.01) possibly_damaging(0.575) TCGA-19-5956-01 1 115130472 115130472 G A DENND2C Missense_Mutation p.R845C 0.49 deleterious(0.01) probably_damaging(0.988) TCGA-19-5956-01 1 115168396 115168396 G T DENND2C Missense_Mutation p.N70K 0.14 tolerated(1) benign(0) TCGA-19-5956-01 1 115220133 115220133 C A AMPD1 Missense_Mutation p.E442D 0.21 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 115238086 115238086 G T AMPD1 Missense_Mutation p.L36M 0.19 deleterious_low_confidence(0.05) benign(0.396) TCGA-19-5956-01 1 115266570 115266570 G A CSDE1 Missense_Mutation p.R649C 0.46 deleterious(0.03) benign(0.233) TCGA-19-5956-01 1 115273218 115273218 G A CSDE1 Missense_Mutation p.R414C 0.53 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 1 115403426 115403426 G T SYCP1 Missense_Mutation p.K198N 0.50 tolerated(0.45) benign(0.083) TCGA-19-5956-01 1 115430263 115430263 G T SYCP1 Missense_Mutation p.D403Y 0.24 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 1 11561722 11561722 C T PTCHD2 Missense_Mutation p.R225W 0.14 deleterious(0.02) benign(0.2) TCGA-19-5956-01 1 115829096 115829096 G A NGF Silent p.V107V 0.58 TCGA-19-5956-01 1 115829257 115829257 C T NGF Missense_Mutation p.A54T 0.41 tolerated(0.6) benign(0.002) TCGA-19-5956-01 1 116939306 116939306 G T ATP1A1 Silent p.V641V 0.09 TCGA-19-5956-01 1 117156618 117156618 C T IGSF3 Missense_Mutation p.D201N 0.15 tolerated(0.09) benign(0.047) TCGA-19-5956-01 1 117311318 117311318 G T CD2 Missense_Mutation p.Q323H 0.09 tolerated(0.06) benign(0.267) TCGA-19-5956-01 1 11805866 11805866 C A AGTRAP Missense_Mutation p.L12I 0.23 tolerated(0.67) benign(0.042) TCGA-19-5956-01 1 118454616 118454616 G A GDAP2 Missense_Mutation p.R187C 0.30 deleterious(0) probably_damaging(0.915) TCGA-19-5956-01 1 118506452 118506452 G T SPAG17 Silent p.V2214V 0.08 TCGA-19-5956-01 1 118548175 118548175 A C SPAG17 Silent p.A1546A 0.43 TCGA-19-5956-01 1 118568005 118568005 G A SPAG17 Silent p.D1255D 0.23 TCGA-19-5956-01 1 120057059 120057059 C A HSD3B1 Missense_Mutation p.L305I 0.23 deleterious(0) probably_damaging(0.94) TCGA-19-5956-01 1 120307191 120307191 C T HMGCS2 Missense_Mutation p.G55S 0.57 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 120337037 120337037 C T REG4 3'UTR 0.44 TCGA-19-5956-01 1 120502062 120502062 A G NOTCH2 Missense_Mutation p.M660T 0.27 tolerated(0.15) benign(0.03) TCGA-19-5956-01 1 120930240 120930240 C T FCGR1B Missense_Mutation p.A121T 0.36 tolerated(0.91) benign(0.031) TCGA-19-5956-01 1 1222245 1222245 G A SCNN1D Missense_Mutation p.A337T 0.28 tolerated(0.27) benign(0.002) TCGA-19-5956-01 1 12309292 12309292 G T VPS13D Missense_Mutation p.D154Y 0.47 probably_damaging(0.996) TCGA-19-5956-01 1 12336388 12336388 G T VPS13D Nonsense_Mutation p.E915* 0.12 TCGA-19-5956-01 1 12336563 12336563 G A VPS13D Missense_Mutation p.R973Q 0.27 benign(0.003) TCGA-19-5956-01 1 12371668 12371668 G T VPS13D Missense_Mutation p.D2270Y 0.20 probably_damaging(0.977) TCGA-19-5956-01 1 12446352 12446352 G A VPS13D Missense_Mutation p.A3865T 0.21 benign(0.004) TCGA-19-5956-01 1 12446380 12446380 T C VPS13D Missense_Mutation p.I3874T 0.46 benign(0.169) TCGA-19-5956-01 1 1275118 1275118 C T DVL1 Silent p.T328T 0.18 TCGA-19-5956-01 1 12779506 12779506 T C AADACL3 Silent p.C9C 0.22 TCGA-19-5956-01 1 12835991 12835991 A T PRAMEF12 Missense_Mutation p.N198I 0.08 deleterious(0.03) probably_damaging(0.991) TCGA-19-5956-01 1 12837374 12837374 G A PRAMEF12 Missense_Mutation p.D362N 0.54 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 1 12837814 12837814 G A PRAMEF12 3'UTR 0.39 TCGA-19-5956-01 1 12853510 12853510 G T PRAMEF1 Missense_Mutation p.S45I 0.21 tolerated(0.32) benign(0.329) TCGA-19-5956-01 1 12884880 12884880 T A PRAMEF11 Missense_Mutation p.I411F 0.45 deleterious(0.01) benign(0.161) TCGA-19-5956-01 1 12939730 12939730 C A PRAMEF4 Missense_Mutation p.D358Y 0.17 tolerated(0.16) possibly_damaging(0.812) TCGA-19-5956-01 1 1330867 1330867 T A CCNL2 Missense_Mutation p.Q167H 0.12 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 1 13695843 13695843 G T PRAMEF19 Missense_Mutation p.S374R 0.45 probably_damaging(0.998) TCGA-19-5956-01 1 13716972 13716972 C A PRAMEF17 Silent p.L153L 0.08 TCGA-19-5956-01 1 14099617 14099617 C T PRDM2 Nonsense_Mutation p.Q186* 0.29 TCGA-19-5956-01 1 14105456 14105456 C A PRDM2 Missense_Mutation p.A389D 0.46 probably_damaging(0.99) TCGA-19-5956-01 1 14108958 14108958 C T PRDM2 Silent p.N1556N 0.22 TCGA-19-5956-01 1 1417552 1417552 G T ATAD3B Missense_Mutation p.K183N 0.25 deleterious(0) possibly_damaging(0.772) TCGA-19-5956-01 1 144866689 144866689 G T PDE4DIP Silent p.I1851I 0.18 TCGA-19-5956-01 1 144879393 144879393 C T PDE4DIP Missense_Mutation p.V1353I 0.19 tolerated(0.24) benign(0.03) TCGA-19-5956-01 1 144951946 144951946 A T PDE4DIP Intron 0.17 TCGA-19-5956-01 1 144952293 144952293 C A PDE4DIP Missense_Mutation p.E142D 0.24 tolerated(0.38) probably_damaging(0.954) TCGA-19-5956-01 1 145293512 145293512 G A NBPF10 Missense_Mutation p.R36K 0.11 benign(0.138) TCGA-19-5956-01 1 145301723 145301723 A G NBPF10 Missense_Mutation p.Y331C 0.17 probably_damaging(0.971) TCGA-19-5956-01 1 145414817 145414817 C A HFE2 Silent p.S12S 0.23 TCGA-19-5956-01 1 145456652 145456652 G A POLR3GL Silent p.D214D 0.22 TCGA-19-5956-01 1 145539782 145539782 G T ITGA10 Nonsense_Mutation p.E1072* 0.29 TCGA-19-5956-01 1 145594076 145594076 G A POLR3C Missense_Mutation p.R496C 0.10 deleterious(0) probably_damaging(0.939) TCGA-19-5956-01 1 145594187 145594187 G A POLR3C Missense_Mutation p.R459C 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 146639402 146639402 C A PRKAB2 Missense_Mutation p.E89D 0.09 tolerated(0.29) probably_damaging(0.978) TCGA-19-5956-01 1 147230432 147230432 C A GJA5 Missense_Mutation p.E305D 0.09 tolerated(0.45) benign(0) TCGA-19-5956-01 1 147380409 147380409 C T GJA8 Silent p.R109R 0.18 TCGA-19-5956-01 1 14925403 14925403 A C KAZN 5'UTR 0.25 TCGA-19-5956-01 1 149879372 149879372 G A SV2A Missense_Mutation p.R520W 0.18 deleterious(0.01) benign(0.116) TCGA-19-5956-01 1 149881385 149881385 G A SV2A Nonsense_Mutation p.R383* 0.24 TCGA-19-5956-01 1 149885038 149885038 G T SV2A Missense_Mutation p.L119M 0.14 tolerated_low_confidence(0.26) benign(0.007) TCGA-19-5956-01 1 149898357 149898357 C T SF3B4 Missense_Mutation p.R206H 0.24 tolerated(0.09) benign(0.188) TCGA-19-5956-01 1 149900630 149900630 C T MTMR11 3'UTR 0.33 TCGA-19-5956-01 1 149900851 149900851 G T MTMR11 3'UTR 0.62 TCGA-19-5956-01 1 149916429 149916429 C T OTUD7B Missense_Mutation p.R620H 0.51 deleterious(0.03) probably_damaging(0.997) TCGA-19-5956-01 1 149921546 149921546 T A OTUD7B Missense_Mutation p.N370I 0.10 tolerated(0.19) benign(0.019) TCGA-19-5956-01 1 150246545 150246545 C A C1orf54 Silent p.V34V 0.05 TCGA-19-5956-01 1 150280688 150280688 G A MRPS21 3'UTR 0.30 TCGA-19-5956-01 1 150307640 150307640 G A PRPF3 Silent p.Q321Q 0.12 TCGA-19-5956-01 1 150413469 150413469 G T RPRD2 Nonsense_Mutation p.E136* 0.27 TCGA-19-5956-01 1 150445562 150445562 G A RPRD2 Missense_Mutation p.G1380S 0.11 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-19-5956-01 1 150529501 150529501 G A ADAMTSL4 Silent p.E612E 0.06 TCGA-19-5956-01 1 150599822 150599822 C T ENSA Intron 0.20 TCGA-19-5956-01 1 150769364 150769364 T G CTSK Missense_Mutation p.N301H 0.06 tolerated(0.25) benign(0.038) TCGA-19-5956-01 1 150935157 150935157 A C SETDB1 Missense_Mutation p.S1085R 0.20 tolerated_low_confidence(0.1) benign(0.055) TCGA-19-5956-01 1 150960653 150960653 C T ANXA9 Missense_Mutation p.L262F 0.44 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 1 150981078 150981078 C T PRUNE 5'UTR 0.42 TCGA-19-5956-01 1 151011298 151011298 C A BNIPL Missense_Mutation p.L77M 0.44 deleterious(0.01) probably_damaging(0.99) TCGA-19-5956-01 1 151199799 151199799 C T PIP5K1A Missense_Mutation p.P54S 0.46 deleterious_low_confidence(0.03) benign(0.008) TCGA-19-5956-01 1 151338253 151338253 C T SELENBP1 Missense_Mutation p.E305K 0.20 tolerated(0.17) benign(0.167) TCGA-19-5956-01 1 151501929 151501929 C T CGN Missense_Mutation p.A667V 0.52 deleterious(0.01) benign(0.007) TCGA-19-5956-01 1 151509683 151509683 G A CGN Missense_Mutation p.R1158H 0.45 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 151611494 151611494 G T SNX27 Missense_Mutation p.D148Y 0.12 deleterious(0) probably_damaging(0.964) TCGA-19-5956-01 1 151677546 151677546 G A CELF3 Missense_Mutation p.R457W 0.13 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 151743686 151743686 G A OAZ3 Silent p.E188E 0.54 TCGA-19-5956-01 1 151860784 151860784 G A THEM4 Silent p.I174I 0.45 TCGA-19-5956-01 1 152058819 152058819 G T TCHHL1 Missense_Mutation p.L447I 0.10 tolerated(0.07) possibly_damaging(0.84) TCGA-19-5956-01 1 152127781 152127781 G T RPTN Missense_Mutation p.F598L 0.24 tolerated(0.29) benign(0.005) TCGA-19-5956-01 1 152128266 152128266 A G RPTN Missense_Mutation p.S437P 0.03 deleterious(0.02) benign(0.024) TCGA-19-5956-01 1 152185960 152185960 C T HRNR Silent p.G2715G 0.33 TCGA-19-5956-01 1 152195694 152195694 G A HRNR Silent p.I12I 0.35 TCGA-19-5956-01 1 152275428 152275428 G T FLG Missense_Mutation p.S3978R 0.36 unknown(0) TCGA-19-5956-01 1 152276886 152276886 G A FLG Silent p.D3492D 0.05 TCGA-19-5956-01 1 152279733 152279733 G T FLG Missense_Mutation p.S2543R 0.42 probably_damaging(0.979) TCGA-19-5956-01 1 152281063 152281063 G T FLG Missense_Mutation p.S2100Y 0.23 possibly_damaging(0.608) TCGA-19-5956-01 1 152281757 152281757 G A FLG Missense_Mutation p.R1869C 0.44 possibly_damaging(0.689) TCGA-19-5956-01 1 152282672 152282672 G A FLG Missense_Mutation p.P1564S 0.46 possibly_damaging(0.876) TCGA-19-5956-01 1 152283355 152283355 G T FLG Missense_Mutation p.S1336Y 0.24 possibly_damaging(0.608) TCGA-19-5956-01 1 152286268 152286268 G T FLG Missense_Mutation p.S365Y 0.17 probably_damaging(0.997) TCGA-19-5956-01 1 152287224 152287224 C A FLG Splice_Site p.X47_splice 0.19 TCGA-19-5956-01 1 152384661 152384661 G A CRNN Missense_Mutation p.R17C 0.47 tolerated(0.12) benign(0.133) TCGA-19-5956-01 1 152759972 152759972 G A LCE1E Missense_Mutation p.G66D 0.14 tolerated_low_confidence(0.97) unknown(0) TCGA-19-5956-01 1 152944610 152944610 T C SPRR4 3'UTR 0.09 TCGA-19-5956-01 1 153043196 153043196 C A SPRR2B Missense_Mutation p.K40N 0.20 deleterious_low_confidence(0.02) unknown(0) TCGA-19-5956-01 1 153580648 153580648 C T S100A16 5'UTR 0.17 TCGA-19-5956-01 1 153652147 153652147 A G NPR1 Missense_Mutation p.Y188C 0.21 deleterious(0.02) possibly_damaging(0.796) TCGA-19-5956-01 1 153656287 153656287 T G NPR1 Missense_Mutation p.F491V 0.17 tolerated(0.37) benign(0.002) TCGA-19-5956-01 1 153745809 153745809 T C INTS3 3'UTR 0.50 TCGA-19-5956-01 1 153782711 153782711 T C GATAD2B Missense_Mutation p.Y575C 0.28 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 1 153785831 153785831 C A GATAD2B Missense_Mutation p.K438N 0.20 tolerated(0.35) benign(0.115) TCGA-19-5956-01 1 153910322 153910322 C A DENND4B Missense_Mutation p.E661D 0.19 tolerated(0.65) probably_damaging(0.98) TCGA-19-5956-01 1 153915373 153915373 C T DENND4B Missense_Mutation p.R184H 0.43 deleterious(0) probably_damaging(0.95) TCGA-19-5956-01 1 154076507 154076507 G T NUP210L Silent p.V600V 0.19 TCGA-19-5956-01 1 154164477 154164477 C A TPM3 Missense_Mutation p.K6N 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 154223676 154223676 G A UBAP2L Missense_Mutation p.S458N 0.09 tolerated(0.63) benign(0.184) TCGA-19-5956-01 1 154543758 154543758 C T CHRNB2 Silent p.S153S 0.38 TCGA-19-5956-01 1 154841665 154841665 T G KCNN3 Missense_Mutation p.N259T 0.43 tolerated(0.46) benign(0.058) TCGA-19-5956-01 1 155026884 155026884 C A ADAM15 Missense_Mutation p.L172I 0.44 tolerated(0.1) benign(0.046) TCGA-19-5956-01 1 155031202 155031202 G A ADAM15 Missense_Mutation p.R645Q 0.13 tolerated(0.3) benign(0.037) TCGA-19-5956-01 1 155110763 155110763 C T SLC50A1 3'UTR 0.21 TCGA-19-5956-01 1 155148600 155148600 G T TRIM46 Nonsense_Mutation p.E188* 0.10 TCGA-19-5956-01 1 155150983 155150983 T G TRIM46 Silent p.T393T 0.13 TCGA-19-5956-01 1 155182239 155182239 G A MTX1 Missense_Mutation p.A279T 0.11 tolerated(0.15) benign(0.241) TCGA-19-5956-01 1 155205032 155205032 C T GBA Missense_Mutation p.A487T 0.44 deleterious(0.02) possibly_damaging(0.903) TCGA-19-5956-01 1 155209840 155209840 G A GBA Silent p.F48F 0.30 TCGA-19-5956-01 1 155223433 155223433 G T FAM189B Missense_Mutation p.L202M 0.19 deleterious(0.01) possibly_damaging(0.602) TCGA-19-5956-01 1 155290858 155290858 G T RUSC1 Intron 0.12 TCGA-19-5956-01 1 155296693 155296693 C A RUSC1 Missense_Mutation p.S728R 0.11 deleterious(0.02) possibly_damaging(0.501) TCGA-19-5956-01 1 155365263 155365263 C T ASH1L Silent p.A2030A 0.13 TCGA-19-5956-01 1 155448699 155448699 C T ASH1L Missense_Mutation p.R1321Q 0.18 deleterious_low_confidence(0.03) probably_damaging(0.996) TCGA-19-5956-01 1 155452024 155452024 C A ASH1L Nonsense_Mutation p.G213* 0.52 TCGA-19-5956-01 1 155452133 155452133 C A ASH1L Missense_Mutation p.K176N 0.08 deleterious_low_confidence(0) possibly_damaging(0.624) TCGA-19-5956-01 1 155823523 155823523 G A GON4L Missense_Mutation p.H17Y 0.49 deleterious_low_confidence(0) benign(0.291) TCGA-19-5956-01 1 155851155 155851155 C T SYT11 Silent p.F384F 0.20 TCGA-19-5956-01 1 155889758 155889758 C T KIAA0907 Intron 0.47 TCGA-19-5956-01 1 155988143 155988143 C A SSR2 Nonsense_Mutation p.E58* 0.11 TCGA-19-5956-01 1 156084821 156084821 C T LMNA Missense_Mutation p.L38F 0.50 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 1 156236068 156236068 G T SMG5 Missense_Mutation p.F453L 0.26 tolerated(0.53) benign(0) TCGA-19-5956-01 1 1562802 1562802 G T MIB2 Missense_Mutation p.A616S 0.09 deleterious(0.01) possibly_damaging(0.905) TCGA-19-5956-01 1 156563917 156563917 C T APOA1BP 3'UTR 0.49 TCGA-19-5956-01 1 156697278 156697278 G A ISG20L2 Missense_Mutation p.S56F 0.22 tolerated(0.17) benign(0.23) TCGA-19-5956-01 1 156816460 156816460 C T INSRR Missense_Mutation p.R554H 0.07 deleterious(0.04) possibly_damaging(0.855) TCGA-19-5956-01 1 156836701 156836701 G T NTRK1 Splice_Site p.X120_splice 0.46 TCGA-19-5956-01 1 157508896 157508896 G A FCRL5 Missense_Mutation p.A461V 0.48 tolerated(0.25) benign(0.027) TCGA-19-5956-01 1 157660187 157660187 G T FCRL3 Silent p.T516T 0.22 TCGA-19-5956-01 1 157667743 157667743 C T FCRL3 Intron 0.32 TCGA-19-5956-01 1 157739894 157739894 G A FCRL2 Silent p.I119I 0.08 TCGA-19-5956-01 1 157767965 157767965 G T FCRL1 Missense_Mutation p.P367H 0.20 deleterious(0.01) benign(0.168) TCGA-19-5956-01 1 157773798 157773798 G T FCRL1 Missense_Mutation p.F52L 0.17 deleterious(0) probably_damaging(0.956) TCGA-19-5956-01 1 158064787 158064787 G T KIRREL Missense_Mutation p.E717D 0.17 tolerated(0.23) benign(0.01) TCGA-19-5956-01 1 158151334 158151334 G A CD1D Missense_Mutation p.G51R 0.06 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 1 158259809 158259809 G A CD1C 5'UTR 0.40 TCGA-19-5956-01 1 158261173 158261173 G A CD1C Missense_Mutation p.S104N 0.14 tolerated(0.13) benign(0.002) TCGA-19-5956-01 1 158300712 158300712 G T CD1B Missense_Mutation p.L68M 0.11 deleterious(0.01) probably_damaging(0.992) TCGA-19-5956-01 1 158390606 158390606 G T OR10K2 Missense_Mutation p.F17L 0.22 deleterious(0.03) probably_damaging(0.995) TCGA-19-5956-01 1 158449910 158449910 C T OR10R2 Silent p.F81F 0.22 TCGA-19-5956-01 1 158516956 158516956 C A OR6Y1 Nonsense_Mutation p.G314* 0.21 TCGA-19-5956-01 1 158549036 158549036 G T OR10X1 Silent p.I218I 0.09 TCGA-19-5956-01 1 158607893 158607893 C T SPTA1 Missense_Mutation p.E1707K 0.44 tolerated(0.68) benign(0.06) TCGA-19-5956-01 1 158613149 158613149 C A SPTA1 Nonsense_Mutation p.E1469* 0.52 TCGA-19-5956-01 1 158641153 158641153 C T SPTA1 Missense_Mutation p.A527T 0.20 deleterious(0.03) probably_damaging(0.954) TCGA-19-5956-01 1 158645996 158645996 G T SPTA1 Silent p.V349V 0.05 TCGA-19-5956-01 1 158651421 158651421 G T SPTA1 Missense_Mutation p.L143M 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 158687666 158687666 C A OR6K3 Missense_Mutation p.K80N 0.21 tolerated(0.24) benign(0.062) TCGA-19-5956-01 1 158724725 158724725 C T OR6K6 Silent p.F40F 0.42 TCGA-19-5956-01 1 158746716 158746716 G T OR6N2 Missense_Mutation p.A237D 0.45 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 1 158815437 158815437 C T MNDA Missense_Mutation p.P211S 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 1 158912028 158912028 C A PYHIN1 Missense_Mutation p.L281I 0.14 deleterious(0.04) probably_damaging(0.997) TCGA-19-5956-01 1 158984583 158984583 A C IFI16 Missense_Mutation p.K38T 0.07 deleterious(0) possibly_damaging(0.837) TCGA-19-5956-01 1 158984691 158984691 C T IFI16 Missense_Mutation p.T74M 0.50 tolerated(0.12) benign(0.039) TCGA-19-5956-01 1 159283742 159283742 C A OR10J3 Missense_Mutation p.K236N 0.21 deleterious(0) probably_damaging(0.93) TCGA-19-5956-01 1 159888732 159888732 C A TAGLN2 Splice_Site p.X153_splice 0.26 TCGA-19-5956-01 1 159889481 159889481 C A TAGLN2 Missense_Mutation p.D109Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 159890184 159890184 C T TAGLN2 Missense_Mutation p.R39Q 0.07 tolerated(0.22) benign(0.004) TCGA-19-5956-01 1 159922112 159922112 C A SLAMF9 Missense_Mutation p.A202S 0.22 deleterious(0.01) probably_damaging(0.987) TCGA-19-5956-01 1 160001587 160001587 C T PIGM 5'UTR 0.30 TCGA-19-5956-01 1 160093739 160093739 C T ATP1A2 Silent p.L130L 0.48 TCGA-19-5956-01 1 160106415 160106415 C T ATP1A2 Silent p.N873N 0.42 TCGA-19-5956-01 1 160121917 160121917 A C ATP1A4 Missense_Mutation p.K29N 0.45 tolerated(0.19) benign(0.015) TCGA-19-5956-01 1 160318821 160318821 G A NCSTN Missense_Mutation p.V75I 0.29 deleterious(0.03) benign(0.266) TCGA-19-5956-01 1 160389386 160389386 G A VANGL2 Missense_Mutation p.V263I 0.15 tolerated(1) benign(0.016) TCGA-19-5956-01 1 160465920 160465920 C A SLAMF6 Missense_Mutation p.G105C 0.18 deleterious(0) probably_damaging(0.92) TCGA-19-5956-01 1 160519727 160519727 C T CD84 Missense_Mutation p.E318K 0.15 tolerated(0.07) benign(0.074) TCGA-19-5956-01 1 160523894 160523894 G T CD84 Missense_Mutation p.S144Y 0.25 tolerated(0.1) possibly_damaging(0.904) TCGA-19-5956-01 1 160721148 160721148 G T SLAMF7 Missense_Mutation p.E261D 0.19 tolerated(0.33) benign(0.007) TCGA-19-5956-01 1 161017595 161017595 T C ARHGAP30 Silent p.E1072E 0.09 TCGA-19-5956-01 1 161018920 161018920 C A ARHGAP30 Missense_Mutation p.G631W 0.40 deleterious_low_confidence(0) possibly_damaging(0.9) TCGA-19-5956-01 1 161092211 161092211 C T DEDD Missense_Mutation p.R228H 0.24 deleterious(0.05) probably_damaging(0.997) TCGA-19-5956-01 1 161161235 161161235 T C ADAMTS4 Missense_Mutation p.Y736C 0.06 deleterious(0) possibly_damaging(0.903) TCGA-19-5956-01 1 161254130 161254130 A T PCP4L1 Silent p.G22G 0.09 TCGA-19-5956-01 1 161275758 161275758 G A MPZ Silent p.L219L 0.49 TCGA-19-5956-01 1 161487928 161487928 G A FCGR2A Missense_Mutation p.S315N 0.19 deleterious_low_confidence(0) benign(0.092) TCGA-19-5956-01 1 161495154 161495154 G A HSPA6 Missense_Mutation p.D236N 0.27 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-19-5956-01 1 161495448 161495448 C A HSPA6 Missense_Mutation p.H334N 0.19 tolerated_low_confidence(0.1) benign(0.043) TCGA-19-5956-01 1 161569570 161569570 G A FCGR2C Intron 0.45 TCGA-19-5956-01 1 161976203 161976203 G A OLFML2B Nonsense_Mutation p.R203* 0.10 TCGA-19-5956-01 1 161989812 161989812 G A OLFML2B Missense_Mutation p.S112L 0.09 deleterious(0) benign(0.096) TCGA-19-5956-01 1 162345144 162345144 G T C1orf111 Silent p.A51A 0.38 TCGA-19-5956-01 1 16254703 16254703 G T SPEN Missense_Mutation p.E656D 0.19 benign(0.015) TCGA-19-5956-01 1 16261229 16261229 G A SPEN Missense_Mutation p.A2832T 0.59 probably_damaging(0.999) TCGA-19-5956-01 1 16268386 16268386 C A ZBTB17 3'UTR 0.39 TCGA-19-5956-01 1 162748498 162748498 C A DDR2 Missense_Mutation p.F804L 0.14 tolerated(0.05) possibly_damaging(0.791) TCGA-19-5956-01 1 163044453 163044453 G A RGS4 3'UTR 0.46 TCGA-19-5956-01 1 163313593 163313593 C A NUF2 Missense_Mutation p.S247Y 0.45 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 1 163315494 163315494 C A NUF2 Silent p.I278I 0.54 TCGA-19-5956-01 1 16380140 16380140 C T CLCNKB Silent p.H543H 0.15 TCGA-19-5956-01 1 16528323 16528323 G A ARHGEF19 Silent p.C700C 0.19 TCGA-19-5956-01 1 165623516 165623516 C T MGST3 Missense_Mutation p.R84C 0.11 tolerated(0.06) possibly_damaging(0.616) TCGA-19-5956-01 1 165632349 165632349 C T ALDH9A1 Missense_Mutation p.E499K 0.42 tolerated(0.14) possibly_damaging(0.802) TCGA-19-5956-01 1 166818419 166818419 C T POGK Silent p.D201D 0.08 TCGA-19-5956-01 1 166987075 166987075 G A MAEL Missense_Mutation p.S307N 0.21 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 167096396 167096396 G A DUSP27 Silent p.T676T 0.23 TCGA-19-5956-01 1 167400950 167400950 C T CD247 Missense_Mutation p.A155T 0.42 deleterious(0) probably_damaging(0.951) TCGA-19-5956-01 1 167666752 167666752 G A RCSD1 Silent p.G297G 0.67 TCGA-19-5956-01 1 167793961 167793961 C T ADCY10 Missense_Mutation p.V1295M 0.40 tolerated(0.48) benign(0.043) TCGA-19-5956-01 1 167794091 167794091 G T ADCY10 Silent p.I1251I 0.44 TCGA-19-5956-01 1 167806523 167806523 A T ADCY10 Missense_Mutation p.I1014N 0.08 tolerated(0.34) benign(0.002) TCGA-19-5956-01 1 168274389 168274389 G T TBX19 Missense_Mutation p.A291S 0.44 tolerated(0.75) benign(0.015) TCGA-19-5956-01 1 168281984 168281984 G A TBX19 Missense_Mutation p.G364E 0.24 deleterious(0.01) possibly_damaging(0.649) TCGA-19-5956-01 1 168282218 168282218 C A TBX19 Missense_Mutation p.S442Y 0.20 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 1 16890455 16890455 C T NBPF1 Missense_Mutation p.V1135I 0.08 tolerated_low_confidence(0.6) benign(0.097) TCGA-19-5956-01 1 16914284 16914284 C T NBPF1 Missense_Mutation p.E168K 0.07 tolerated(0.05) possibly_damaging(0.502) TCGA-19-5956-01 1 169345801 169345801 C T BLZF1 Nonsense_Mutation p.R18* 0.38 TCGA-19-5956-01 1 169390950 169390950 G T CCDC181 Missense_Mutation p.P240H 0.21 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 169391282 169391282 C A CCDC181 Missense_Mutation p.E129D 0.22 tolerated(0.05) benign(0.109) TCGA-19-5956-01 1 169437964 169437964 C T SLC19A2 Missense_Mutation p.D381N 0.47 tolerated(0.32) benign(0.032) TCGA-19-5956-01 1 169510633 169510633 G T F5 Missense_Mutation p.S1232Y 0.19 deleterious(0.04) probably_damaging(0.983) TCGA-19-5956-01 1 169512016 169512016 A G F5 Missense_Mutation p.I771T 0.06 tolerated(1) benign(0) TCGA-19-5956-01 1 169512083 169512083 C A F5 Nonsense_Mutation p.E749* 0.52 TCGA-19-5956-01 1 169521973 169521973 C A F5 Splice_Site p.X373_splice 0.24 TCGA-19-5956-01 1 169572302 169572302 C T SELP Missense_Mutation p.R556Q 0.16 tolerated(0.14) benign(0.075) TCGA-19-5956-01 1 169582228 169582228 C T SELP Silent p.G238G 0.24 TCGA-19-5956-01 1 169677748 169677748 T C SELL Missense_Mutation p.I107M 0.46 deleterious(0.01) possibly_damaging(0.552) TCGA-19-5956-01 1 169762065 169762065 T C METTL18 Missense_Mutation p.T258A 0.15 tolerated(1) benign(0) TCGA-19-5956-01 1 169762873 169762873 T G METTL18 5'UTR 0.46 TCGA-19-5956-01 1 171061881 171061881 C T FMO3 Missense_Mutation p.P28S 0.21 deleterious(0.01) probably_damaging(0.954) TCGA-19-5956-01 1 171300868 171300868 C T FMO4 Missense_Mutation p.L192F 0.07 deleterious(0) probably_damaging(0.917) TCGA-19-5956-01 1 171303813 171303813 C T FMO4 Missense_Mutation p.T364I 0.17 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 1 171504602 171504602 C T PRRC2C Missense_Mutation p.R635C 0.09 unknown(0) TCGA-19-5956-01 1 171556217 171556217 C T PRRC2C Missense_Mutation p.P2607S 0.52 possibly_damaging(0.519) TCGA-19-5956-01 1 171605841 171605841 C A MYOC Nonsense_Mutation p.E247* 0.21 TCGA-19-5956-01 1 171753471 171753471 C T METTL13 Nonsense_Mutation p.R249* 0.18 TCGA-19-5956-01 1 172013574 172013574 A C DNM3 Missense_Mutation p.K393T 0.42 deleterious(0.02) possibly_damaging(0.551) TCGA-19-5956-01 1 172417653 172417653 T A C1orf105 Silent p.V60V 0.11 TCGA-19-5956-01 1 172520708 172520708 A G SUCO Missense_Mutation p.Y40C 0.21 deleterious_low_confidence(0.04) possibly_damaging(0.827) TCGA-19-5956-01 1 17265529 17265529 G A CROCC Silent p.S500S 0.14 TCGA-19-5956-01 1 173010750 173010750 A C TNFSF18 Missense_Mutation p.I119M 0.25 deleterious(0) probably_damaging(0.974) TCGA-19-5956-01 1 17312607 17312607 G A ATP13A2 3'UTR 0.60 TCGA-19-5956-01 1 173504992 173504992 T G SLC9C2 Missense_Mutation p.E584D 0.07 tolerated(0.59) benign(0.015) TCGA-19-5956-01 1 173517535 173517535 T C SLC9C2 Missense_Mutation p.Y485C 0.24 deleterious(0.02) possibly_damaging(0.906) TCGA-19-5956-01 1 173551090 173551090 T C SLC9C2 Missense_Mutation p.Y233C 0.10 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 1 173839726 173839726 C A ZBTB37 Silent p.I121I 0.35 TCGA-19-5956-01 1 173930315 173930315 C T RC3H1 Missense_Mutation p.R757Q 0.23 deleterious(0.04) probably_damaging(0.996) TCGA-19-5956-01 1 173930367 173930367 G A RC3H1 Missense_Mutation p.R740W 0.41 deleterious(0) possibly_damaging(0.708) TCGA-19-5956-01 1 173941746 173941746 C A RC3H1 Missense_Mutation p.W374C 0.18 deleterious(0) possibly_damaging(0.855) TCGA-19-5956-01 1 175324639 175324639 C A TNR Missense_Mutation p.K1083N 0.29 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 17575638 17575638 G A PADI3 Silent p.S2S 0.44 TCGA-19-5956-01 1 17594362 17594362 G A PADI3 Missense_Mutation p.R186Q 0.11 deleterious(0.04) benign(0.377) TCGA-19-5956-01 1 176661304 176661304 G A PAPPA2 Missense_Mutation p.R825Q 0.14 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 176668555 176668555 C T PAPPA2 Silent p.V1022V 0.23 TCGA-19-5956-01 1 176762798 176762798 A C PAPPA2 Missense_Mutation p.K1708T 0.43 deleterious(0.03) benign(0.118) TCGA-19-5956-01 1 17725248 17725248 G A PADI6 RNA 0.10 TCGA-19-5956-01 1 178427337 178427337 C T RASAL2 Silent p.S970S 0.45 TCGA-19-5956-01 1 178490060 178490060 G A TEX35 Intron 0.33 TCGA-19-5956-01 1 178854226 178854226 C T RALGPS2 Missense_Mutation p.A307V 0.51 tolerated(0.39) benign(0.043) TCGA-19-5956-01 1 179041284 179041284 C T FAM20B 3'UTR 0.31 TCGA-19-5956-01 1 179063295 179063295 G T TOR3A Nonsense_Mutation p.E296* 0.13 TCGA-19-5956-01 1 179064166 179064166 T C TOR3A Missense_Mutation p.L336P 0.11 deleterious(0) probably_damaging(0.952) TCGA-19-5956-01 1 179078382 179078382 C A ABL2 Nonsense_Mutation p.E674* 0.45 TCGA-19-5956-01 1 17914019 17914019 G A ARHGEF10L Silent p.A34A 0.26 TCGA-19-5956-01 1 179452312 179452312 A C AXDND1 Missense_Mutation p.I683L 0.10 tolerated(0.3) benign(0) TCGA-19-5956-01 1 179562717 179562717 C T TDRD5 Missense_Mutation p.R119W 0.50 tolerated(0.15) possibly_damaging(0.655) TCGA-19-5956-01 1 179783132 179783132 C A FAM163A Silent p.P104P 0.21 TCGA-19-5956-01 1 179989232 179989232 T A CEP350 Missense_Mutation p.F775I 0.16 benign(0.019) TCGA-19-5956-01 1 180022185 180022185 C T CEP350 Nonsense_Mutation p.R1625* 0.42 TCGA-19-5956-01 1 180153072 180153072 C A QSOX1 Missense_Mutation p.F258L 0.20 tolerated(0.08) benign(0.259) TCGA-19-5956-01 1 180165946 180165946 G A QSOX1 Missense_Mutation p.R673H 0.27 tolerated(0.09) benign(0.015) TCGA-19-5956-01 1 180235535 180235535 G A LHX4 Missense_Mutation p.G86D 0.43 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 1 180235644 180235644 G T LHX4 Silent p.R122R 0.47 TCGA-19-5956-01 1 180235690 180235690 C T LHX4 Silent p.L138L 0.10 TCGA-19-5956-01 1 180240719 180240719 G T LHX4 Intron 0.30 TCGA-19-5956-01 1 180885329 180885329 G T KIAA1614 Missense_Mutation p.E30D 0.17 deleterious(0.01) benign(0.318) TCGA-19-5956-01 1 180904703 180904703 C T KIAA1614 Missense_Mutation p.A553V 0.26 tolerated(0.14) benign(0.229) TCGA-19-5956-01 1 181019388 181019388 C A MR1 Missense_Mutation p.F190L 0.40 tolerated(0.13) benign(0.083) TCGA-19-5956-01 1 181688972 181688972 G A CACNA1E Missense_Mutation p.R575Q 0.62 deleterious(0) possibly_damaging(0.553) TCGA-19-5956-01 1 182354554 182354554 C T GLUL Nonsense_Mutation p.W247* 0.31 TCGA-19-5956-01 1 182356292 182356292 A G GLUL Missense_Mutation p.V101A 0.29 tolerated(0.23) possibly_damaging(0.704) TCGA-19-5956-01 1 182356356 182356356 C T GLUL Missense_Mutation p.V80M 0.39 tolerated(0.22) benign(0.047) TCGA-19-5956-01 1 182369254 182369254 C T TEDDM1 Missense_Mutation p.E123K 0.27 tolerated(0.23) benign(0.173) TCGA-19-5956-01 1 182775392 182775392 A G NPL Intron 0.54 TCGA-19-5956-01 1 182898835 182898835 C A SHCBP1L Nonsense_Mutation p.E377* 0.22 TCGA-19-5956-01 1 183072537 183072537 C T LAMC1 Missense_Mutation p.R165C 0.50 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 183072682 183072682 C A LAMC1 Missense_Mutation p.S213Y 0.29 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 1 183083807 183083807 G A LAMC1 Missense_Mutation p.R388H 0.47 deleterious(0.03) probably_damaging(0.996) TCGA-19-5956-01 1 183101563 183101563 C T LAMC1 Nonsense_Mutation p.R1199* 0.24 TCGA-19-5956-01 1 183111704 183111704 G A LAMC1 Missense_Mutation p.E1537K 0.22 deleterious(0.03) benign(0.23) TCGA-19-5956-01 1 183253885 183253885 G T NMNAT2 Silent p.I163I 0.13 TCGA-19-5956-01 1 183510196 183510196 G A SMG7 Missense_Mutation p.R458H 0.09 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 183913434 183913434 C A COLGALT2 Missense_Mutation p.K431N 0.21 deleterious(0.03) possibly_damaging(0.477) TCGA-19-5956-01 1 184764287 184764287 C T FAM129A Missense_Mutation p.A871T 0.16 tolerated_low_confidence(0.85) benign(0.001) TCGA-19-5956-01 1 184775086 184775086 G A FAM129A Silent p.V480V 0.28 TCGA-19-5956-01 1 1849480 1849480 G A TMEM52 Silent p.Y157Y 0.24 TCGA-19-5956-01 1 185112528 185112528 G A TRMT1L Nonsense_Mutation p.R274* 0.43 TCGA-19-5956-01 1 185259941 185259941 G A SWT1 3'UTR 0.57 TCGA-19-5956-01 1 185987347 185987347 G T HMCN1 Missense_Mutation p.R1778M 0.12 probably_damaging(0.99) TCGA-19-5956-01 1 186057286 186057286 G A HMCN1 Missense_Mutation p.S3152N 0.24 benign(0.287) TCGA-19-5956-01 1 186084052 186084052 G A HMCN1 Missense_Mutation p.R3793H 0.52 benign(0.015) TCGA-19-5956-01 1 186113737 186113737 G A HMCN1 Missense_Mutation p.R4723K 0.51 probably_damaging(0.946) TCGA-19-5956-01 1 186275519 186275519 G A PRG4 Missense_Mutation p.G223E 0.45 probably_damaging(1) TCGA-19-5956-01 1 186275685 186275685 G T PRG4 Silent p.V278V 0.06 TCGA-19-5956-01 1 186281264 186281264 A C TPR 3'UTR 0.53 TCGA-19-5956-01 1 186282943 186282943 G A TPR 3'UTR 0.49 TCGA-19-5956-01 1 186312598 186312598 G A TPR Nonsense_Mutation p.R1204* 0.42 TCGA-19-5956-01 1 186324840 186324840 G A TPR Missense_Mutation p.T650I 0.50 possibly_damaging(0.507) TCGA-19-5956-01 1 186332101 186332101 T C TPR Silent p.E188E 0.24 TCGA-19-5956-01 1 186643738 186643738 A G PTGS2 Missense_Mutation p.M521T 0.20 deleterious(0) possibly_damaging(0.889) TCGA-19-5956-01 1 190129876 190129876 G A BRINP3 Missense_Mutation p.A369V 0.14 tolerated(0.07) probably_damaging(0.994) TCGA-19-5956-01 1 19420591 19420591 G T UBR4 Missense_Mutation p.L4597I 0.12 probably_damaging(0.973) TCGA-19-5956-01 1 19423744 19423744 G A UBR4 Missense_Mutation p.R4445W 0.11 probably_damaging(0.993) TCGA-19-5956-01 1 19471389 19471389 A C UBR4 Missense_Mutation p.I2653S 0.21 benign(0.362) TCGA-19-5956-01 1 19488138 19488138 G A UBR4 Missense_Mutation p.A1707V 0.40 probably_damaging(0.998) TCGA-19-5956-01 1 19559242 19559242 C T EMC1 Missense_Mutation p.G553D 0.05 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 1 196251441 196251441 C T KCNT2 Missense_Mutation p.G915R 0.39 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 196251455 196251455 G A KCNT2 Missense_Mutation p.T910M 0.20 deleterious(0.01) probably_damaging(0.991) TCGA-19-5956-01 1 196254882 196254882 G A KCNT2 Missense_Mutation p.R868W 0.57 deleterious(0) possibly_damaging(0.891) TCGA-19-5956-01 1 196709872 196709872 C T CFH Missense_Mutation p.A969V 0.09 tolerated(0.09) possibly_damaging(0.49) TCGA-19-5956-01 1 196716390 196716390 C T CFH Nonsense_Mutation p.R1215* 0.46 TCGA-19-5956-01 1 196918623 196918623 C A CFHR2 Missense_Mutation p.L33I 0.13 tolerated(0.23) benign(0.259) TCGA-19-5956-01 1 197059425 197059425 G A ASPM Nonsense_Mutation p.R3244* 0.10 TCGA-19-5956-01 1 197072139 197072139 T A ASPM Missense_Mutation p.K2081I 0.06 tolerated(0.47) benign(0.17) TCGA-19-5956-01 1 197098426 197098426 T A ASPM Missense_Mutation p.K884M 0.41 deleterious(0) probably_damaging(0.927) TCGA-19-5956-01 1 197099113 197099113 C T ASPM Missense_Mutation p.R854H 0.42 deleterious(0) probably_damaging(0.932) TCGA-19-5956-01 1 197108999 197108999 A G ASPM Silent p.L642L 0.25 TCGA-19-5956-01 1 197128543 197128543 G A ZBTB41 Silent p.G892G 0.24 TCGA-19-5956-01 1 197144145 197144145 C A ZBTB41 Missense_Mutation p.W660C 0.12 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 1 197145768 197145768 C A ZBTB41 Missense_Mutation p.R602I 0.09 tolerated(0.29) benign(0.133) TCGA-19-5956-01 1 197297967 197297967 G A CRB1 Silent p.V162V 0.34 TCGA-19-5956-01 1 197390666 197390666 G A CRB1 Missense_Mutation p.V570M 0.51 deleterious(0) probably_damaging(0.957) TCGA-19-5956-01 1 197396728 197396728 G A CRB1 Missense_Mutation p.S758N 0.11 tolerated(0.14) benign(0.023) TCGA-19-5956-01 1 197396914 197396914 C A CRB1 Missense_Mutation p.S820Y 0.45 deleterious(0.02) possibly_damaging(0.571) TCGA-19-5956-01 1 197396975 197396975 G T CRB1 Missense_Mutation p.E840D 0.20 tolerated(0.13) benign(0.014) TCGA-19-5956-01 1 197404193 197404193 C A CRB1 Missense_Mutation p.A1067D 0.09 deleterious(0.02) probably_damaging(0.959) TCGA-19-5956-01 1 200584721 200584721 C A KIF14 Missense_Mutation p.A377S 0.08 tolerated(0.38) benign(0.199) TCGA-19-5956-01 1 200586937 200586937 C A KIF14 Missense_Mutation p.K305N 0.51 tolerated(0.16) benign(0.103) TCGA-19-5956-01 1 200801461 200801461 G T CAMSAP2 Missense_Mutation p.R260I 0.35 deleterious(0) possibly_damaging(0.733) TCGA-19-5956-01 1 20082140 20082140 C A TMCO4 Nonsense_Mutation p.E168* 0.05 TCGA-19-5956-01 1 200822605 200822605 C A CAMSAP2 Missense_Mutation p.P1269T 0.14 deleterious(0.02) probably_damaging(0.918) TCGA-19-5956-01 1 200959461 200959461 C T KIF21B Splice_Site p.X946_splice 0.41 TCGA-19-5956-01 1 201123091 201123091 G T TMEM9 5'UTR 0.30 TCGA-19-5956-01 1 201297957 201297957 G A PKP1 Missense_Mutation p.R746Q 0.52 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-19-5956-01 1 201330233 201330233 C T TNNT2 Intron 0.12 TCGA-19-5956-01 1 201355883 201355883 G T LAD1 Silent p.I202I 0.21 TCGA-19-5956-01 1 201379468 201379468 C T TNNI1 Silent p.P184P 0.18 TCGA-19-5956-01 1 201687880 201687880 C A NAV1 Missense_Mutation p.T408N 0.10 tolerated(0.31) benign(0.006) TCGA-19-5956-01 1 201868393 201868393 C T LMOD1 Missense_Mutation p.R583H 0.47 probably_damaging(0.992) TCGA-19-5956-01 1 202403783 202403783 G T PPP1R12B Splice_Site p.X381_splice 0.17 TCGA-19-5956-01 1 202549675 202549675 A C PPP1R12B Missense_Mutation p.K979T 0.57 deleterious(0) benign(0.267) TCGA-19-5956-01 1 202568443 202568443 T C SYT2 Missense_Mutation p.K319R 0.21 tolerated(0.07) probably_damaging(0.96) TCGA-19-5956-01 1 202701038 202701038 A G KDM5B Silent p.F1313F 0.19 TCGA-19-5956-01 1 202719899 202719899 C T KDM5B Missense_Mutation p.R570Q 0.12 deleterious(0) probably_damaging(0.952) TCGA-19-5956-01 1 202850093 202850093 C T RABIF 3'UTR 0.38 TCGA-19-5956-01 1 203682302 203682302 G T ATP2B4 Nonsense_Mutation p.E741* 0.11 TCGA-19-5956-01 1 204128542 204128542 G A REN Missense_Mutation p.S225F 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 204401374 204401374 A G PIK3C2B Missense_Mutation p.V1370A 0.25 tolerated(0.36) benign(0.114) TCGA-19-5956-01 1 204409329 204409329 G A PIK3C2B Missense_Mutation p.R1124W 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 1 204518634 204518634 C A MDM4 Missense_Mutation p.L433I 0.22 tolerated(0.16) benign(0.074) TCGA-19-5956-01 1 204937478 204937478 G A NFASC Missense_Mutation p.A270T 0.18 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 1 205033750 205033750 G T CNTN2 Splice_Site p.X464_splice 0.27 TCGA-19-5956-01 1 20517260 20517260 C T UBXN10 Missense_Mutation p.A69V 0.46 tolerated(0.13) benign(0.412) TCGA-19-5956-01 1 205498766 205498766 G A CDK18 Intron 0.35 TCGA-19-5956-01 1 205779276 205779276 G A SLC41A1 Silent p.I98I 0.11 TCGA-19-5956-01 1 205814542 205814542 C A PM20D1 Nonsense_Mutation p.E134* 0.06 TCGA-19-5956-01 1 205901126 205901126 G A SLC26A9 Silent p.I138I 0.44 TCGA-19-5956-01 1 206781593 206781593 T C EIF2D Missense_Mutation p.N140D 0.10 deleterious(0.01) benign(0.37) TCGA-19-5956-01 1 206785746 206785746 G T EIF2D 5'UTR 0.47 TCGA-19-5956-01 1 206902127 206902127 G A MAPKAPK2 Missense_Mutation p.V118I 0.32 deleterious(0) probably_damaging(0.973) TCGA-19-5956-01 1 206902132 206902132 G A MAPKAPK2 Silent p.R119R 0.62 TCGA-19-5956-01 1 206904592 206904592 G T MAPKAPK2 Nonsense_Mutation p.E293* 0.38 TCGA-19-5956-01 1 207262879 207262880 - T C4BPB Frame_Shift_Ins p.W4Lfs*29 0.46 TCGA-19-5956-01 1 207297310 207297310 G T C4BPA Missense_Mutation p.D158Y 0.16 deleterious(0.01) probably_damaging(0.943) TCGA-19-5956-01 1 207498012 207498012 G A CD55 Missense_Mutation p.G132D 0.49 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 207498083 207498083 G A CD55 Missense_Mutation p.E156K 0.46 deleterious(0.05) benign(0.004) TCGA-19-5956-01 1 207498997 207498997 G A CD55 Missense_Mutation p.R170Q 0.45 tolerated(0.56) benign(0.003) TCGA-19-5956-01 1 207642169 207642169 G A CR2 Missense_Mutation p.R220Q 0.20 tolerated(0.98) benign(0.004) TCGA-19-5956-01 1 207643145 207643145 A G CR2 Missense_Mutation p.D308G 0.29 tolerated(1) benign(0.03) TCGA-19-5956-01 1 207643189 207643189 C A CR2 Missense_Mutation p.L323I 0.26 tolerated(1) benign(0.016) TCGA-19-5956-01 1 207684953 207684953 C A CR1 Silent p.I147I 0.22 TCGA-19-5956-01 1 207737500 207737500 G T CR1 Missense_Mutation p.G1263C 0.26 deleterious(0.03) probably_damaging(0.973) TCGA-19-5956-01 1 207790084 207790084 G A CR1 Missense_Mutation p.D2276N 0.47 tolerated(0.07) possibly_damaging(0.815) TCGA-19-5956-01 1 207857274 207857274 T A CR1L Silent p.I145I 0.17 TCGA-19-5956-01 1 208315716 208315716 G A PLXNA2 Silent p.F488F 0.50 TCGA-19-5956-01 1 208390833 208390833 G T PLXNA2 Silent p.L145L 0.18 TCGA-19-5956-01 1 20964387 20964387 G A PINK1 Missense_Mutation p.R147H 0.47 tolerated(0.07) benign(0.022) TCGA-19-5956-01 1 20971140 20971140 C T PINK1 Missense_Mutation p.R312W 0.14 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 209791804 209791804 C T LAMB3 Missense_Mutation p.E968K 0.30 tolerated(0.14) benign(0.001) TCGA-19-5956-01 1 209797071 209797071 C A LAMB3 Splice_Site p.X713_splice 0.23 TCGA-19-5956-01 1 209905881 209905881 C T HSD11B1 Silent p.V206V 0.44 TCGA-19-5956-01 1 209969798 209969798 C A IRF6 Nonsense_Mutation p.E92* 0.41 TCGA-19-5956-01 1 210015933 210015933 C T DIEXF Silent p.A558A 0.16 TCGA-19-5956-01 1 21071490 21071490 G A HP1BP3 Missense_Mutation p.R488W 0.49 deleterious_low_confidence(0.03) benign(0.001) TCGA-19-5956-01 1 211844596 211844596 T G NEK2 Missense_Mutation p.K196Q 0.44 deleterious(0.03) probably_damaging(0.941) TCGA-19-5956-01 1 212180754 212180754 T C INTS7 Missense_Mutation p.I198M 0.23 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 1 212276282 212276282 G T DTL Nonstop_Mutation p.*731Yext*4 0.08 TCGA-19-5956-01 1 212553356 212553356 C T TMEM206 Silent p.G234G 0.15 TCGA-19-5956-01 1 213134637 213134637 A G VASH2 Intron 0.41 TCGA-19-5956-01 1 213251147 213251147 G T RPS6KC1 Missense_Mutation p.G84V 0.19 deleterious(0) probably_damaging(0.911) TCGA-19-5956-01 1 213341203 213341203 G T RPS6KC1 Nonsense_Mutation p.E280* 0.21 TCGA-19-5956-01 1 214170442 214170442 A C PROX1 Missense_Mutation p.E188D 0.10 tolerated(0.36) benign(0.001) TCGA-19-5956-01 1 214503600 214503600 G T SMYD2 Missense_Mutation p.Q265H 0.18 tolerated(0.31) benign(0) TCGA-19-5956-01 1 214813537 214813537 T C CENPF Missense_Mutation p.F619S 0.15 possibly_damaging(0.775) TCGA-19-5956-01 1 214814936 214814936 C A CENPF Missense_Mutation p.F1085L 0.19 benign(0.002) TCGA-19-5956-01 1 214815958 214815958 G T CENPF Missense_Mutation p.C1426F 0.17 possibly_damaging(0.748) TCGA-19-5956-01 1 214818673 214818673 C T CENPF Silent p.Y1920Y 0.42 TCGA-19-5956-01 1 214820119 214820119 A C CENPF Missense_Mutation p.Q2402H 0.45 possibly_damaging(0.748) TCGA-19-5956-01 1 215256656 215256656 T C KCNK2 5'UTR 0.19 TCGA-19-5956-01 1 215821029 215821029 G A USH2A Missense_Mutation p.L4876F 0.47 benign(0.361) TCGA-19-5956-01 1 215953214 215953214 G A USH2A Missense_Mutation p.T3637I 0.42 benign(0.033) TCGA-19-5956-01 1 21599290 21599290 C T ECE1 Missense_Mutation p.G132D 0.43 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 1 216348561 216348561 T C USH2A Intron 0.24 TCGA-19-5956-01 1 216496816 216496816 C A USH2A Missense_Mutation p.R517I 0.42 probably_damaging(0.999) TCGA-19-5956-01 1 216498893 216498893 T G USH2A Missense_Mutation p.Q299H 0.11 probably_damaging(0.999) TCGA-19-5956-01 1 216595280 216595280 C A USH2A Missense_Mutation p.K133N 0.11 benign(0.395) TCGA-19-5956-01 1 217856641 217856641 C T SPATA17 Silent p.L111L 0.09 TCGA-19-5956-01 1 218475680 218475680 G A RRP15 Missense_Mutation p.A62T 0.07 tolerated(0.08) possibly_damaging(0.815) TCGA-19-5956-01 1 218609354 218609354 C A TGFB2 Missense_Mutation p.T294N 0.47 tolerated(0.49) benign(0.211) TCGA-19-5956-01 1 21880525 21880525 G A ALPL 5'UTR 0.11 TCGA-19-5956-01 1 219384958 219384958 C T LYPLAL1 Missense_Mutation p.T201M 0.21 deleterious(0.03) benign(0.266) TCGA-19-5956-01 1 220089238 220089238 G T SLC30A10 Silent p.I337I 0.23 TCGA-19-5956-01 1 220091631 220091631 C T SLC30A10 Silent p.Q308Q 0.42 TCGA-19-5956-01 1 220160611 220160611 T C EPRS Missense_Mutation p.K971E 0.07 tolerated(0.15) benign(0.046) TCGA-19-5956-01 1 220253185 220253185 C T BPNT1 Missense_Mutation p.A2T 0.38 tolerated(0.1) benign(0.038) TCGA-19-5956-01 1 220310237 220310237 T C IARS2 Missense_Mutation p.V678A 0.17 deleterious(0) possibly_damaging(0.648) TCGA-19-5956-01 1 220313562 220313562 T G IARS2 Missense_Mutation p.V782G 0.14 deleterious(0.01) possibly_damaging(0.904) TCGA-19-5956-01 1 220368481 220368481 C T RAB3GAP2 Missense_Mutation p.E357K 0.18 tolerated(0.13) benign(0.115) TCGA-19-5956-01 1 220440482 220440482 C A RAB3GAP2 Intron 0.19 TCGA-19-5956-01 1 22050502 22050502 G A USP48 Silent p.L513L 0.27 TCGA-19-5956-01 1 22079135 22079135 C A USP48 Nonsense_Mutation p.E184* 0.36 TCGA-19-5956-01 1 220928350 220928350 G A MARC2 Missense_Mutation p.V112M 0.06 deleterious(0.02) possibly_damaging(0.782) TCGA-19-5956-01 1 22217149 22217149 C T HSPG2 Missense_Mutation p.E95K 0.10 benign(0.028) TCGA-19-5956-01 1 222753160 222753160 C T TAF1A Missense_Mutation p.E116K 0.08 tolerated(0.25) benign(0.081) TCGA-19-5956-01 1 222803302 222803302 C T MIA3 Missense_Mutation p.P914S 0.08 tolerated(0.31) benign(0.066) TCGA-19-5956-01 1 222849437 222849437 C T AIDA Splice_Site p.X195_splice 0.36 TCGA-19-5956-01 1 223408264 223408264 C A SUSD4 Intron 0.43 TCGA-19-5956-01 1 223987688 223987688 A G TP53BP2 Silent p.F466F 0.23 TCGA-19-5956-01 1 223989953 223989953 G A TP53BP2 Missense_Mutation p.R364W 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 1 224345407 224345407 G T FBXO28 Missense_Mutation p.D356Y 0.22 deleterious_low_confidence(0) possibly_damaging(0.75) TCGA-19-5956-01 1 224553692 224553692 C T CNIH4 Nonsense_Mutation p.R84* 0.10 TCGA-19-5956-01 1 224605995 224605995 G T WDR26 Missense_Mutation p.S329Y 0.42 deleterious(0) possibly_damaging(0.593) TCGA-19-5956-01 1 224612227 224612227 G T WDR26 Missense_Mutation p.L253I 0.15 deleterious(0.01) possibly_damaging(0.882) TCGA-19-5956-01 1 224872537 224872537 C A CNIH3 Missense_Mutation p.L64M 0.47 deleterious(0.02) possibly_damaging(0.721) TCGA-19-5956-01 1 224927059 224927059 C T CNIH3 3'UTR 0.15 TCGA-19-5956-01 1 225599097 225599097 C T LBR Missense_Mutation p.R377Q 0.50 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 1 225718259 225718259 C A ENAH Missense_Mutation p.R144I 0.21 deleterious(0) unknown(0) TCGA-19-5956-01 1 226552729 226552729 G A PARP1 Missense_Mutation p.R878W 0.57 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 226558216 226558216 G A PARP1 Silent p.I691I 0.45 TCGA-19-5956-01 1 226562051 226562051 T C PARP1 Missense_Mutation p.E649G 0.53 deleterious(0.02) possibly_damaging(0.829) TCGA-19-5956-01 1 226564969 226564969 G A PARP1 Missense_Mutation p.T594M 0.09 deleterious(0) probably_damaging(0.953) TCGA-19-5956-01 1 227170386 227170386 C A ADCK3 Silent p.A287A 0.11 TCGA-19-5956-01 1 227170452 227170452 G A ADCK3 Silent p.L309L 0.39 TCGA-19-5956-01 1 227216737 227216737 G A CDC42BPA Silent p.C1316C 0.23 TCGA-19-5956-01 1 227257489 227257489 C T CDC42BPA Missense_Mutation p.D965N 0.11 tolerated(0.06) possibly_damaging(0.679) TCGA-19-5956-01 1 227333279 227333279 G A CDC42BPA Missense_Mutation p.R352W 0.11 deleterious(0) probably_damaging(0.955) TCGA-19-5956-01 1 227441823 227441823 C T CDC42BPA Missense_Mutation p.R71Q 0.09 tolerated(0.31) benign(0.202) TCGA-19-5956-01 1 227842079 227842079 A T ZNF678 Missense_Mutation p.D43V 0.40 deleterious(0.04) benign(0.265) TCGA-19-5956-01 1 227920504 227920504 G A SNAP47 5'Flank 0.19 TCGA-19-5956-01 1 228112027 228112027 C T WNT9A Missense_Mutation p.A143T 0.46 tolerated(0.11) possibly_damaging(0.868) TCGA-19-5956-01 1 228210457 228210457 G A WNT3A Missense_Mutation p.R54H 0.59 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 1 228334618 228334618 C T GUK1 Missense_Mutation p.S98L 0.42 tolerated(0.05) probably_damaging(0.995) TCGA-19-5956-01 1 228335240 228335240 G A GUK1 Missense_Mutation p.V150M 0.25 tolerated(0.07) possibly_damaging(0.903) TCGA-19-5956-01 1 22834554 22834554 C A ZBTB40 Missense_Mutation p.S474Y 0.22 deleterious(0.01) unknown(0) TCGA-19-5956-01 1 228346844 228346844 A G GJC2 3'UTR 0.16 TCGA-19-5956-01 1 228403435 228403435 C T OBSCN Missense_Mutation p.T667M 0.29 benign(0.128) TCGA-19-5956-01 1 228437718 228437718 C T OBSCN Silent p.A1454A 0.50 TCGA-19-5956-01 1 228437790 228437790 C T OBSCN Silent p.D1478D 0.19 TCGA-19-5956-01 1 228444473 228444473 G A OBSCN Silent p.K1569K 0.35 TCGA-19-5956-01 1 228451996 228451996 C T OBSCN Missense_Mutation p.R1773W 0.38 probably_damaging(0.998) TCGA-19-5956-01 1 228475590 228475590 G A OBSCN Missense_Mutation p.R3676Q 0.50 benign(0.064) TCGA-19-5956-01 1 228475624 228475624 C T OBSCN Silent p.F3687F 0.54 TCGA-19-5956-01 1 228497204 228497204 G A OBSCN Missense_Mutation p.G5276E 0.53 probably_damaging(1) TCGA-19-5956-01 1 228511181 228511181 G T OBSCN Nonsense_Mutation p.E6133* 0.15 TCGA-19-5956-01 1 228524704 228524704 G T OBSCN Splice_Site p.X6470_splice 0.20 TCGA-19-5956-01 1 228527790 228527790 G A OBSCN Silent p.Q6758Q 0.26 TCGA-19-5956-01 1 228543867 228543867 C T OBSCN Intron 0.46 TCGA-19-5956-01 1 228554257 228554257 C A OBSCN Missense_Mutation p.L7402M 0.55 possibly_damaging(0.9) TCGA-19-5956-01 1 228556060 228556060 G A OBSCN Silent p.Q7527Q 0.36 TCGA-19-5956-01 1 228559957 228559957 G A OBSCN Missense_Mutation p.D8117N 0.30 benign(0.374) TCGA-19-5956-01 1 228562125 228562125 G T OBSCN Missense_Mutation p.D8456Y 0.52 probably_damaging(0.998) TCGA-19-5956-01 1 228562338 228562338 G T OBSCN Missense_Mutation p.K8473N 0.25 probably_damaging(0.99) TCGA-19-5956-01 1 22902867 22902867 G A EPHA8 Missense_Mutation p.R106H 0.13 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 229730338 229730338 C A TAF5L Missense_Mutation p.L492F 0.09 deleterious(0) possibly_damaging(0.841) TCGA-19-5956-01 1 229738209 229738209 G A TAF5L Silent p.N235N 0.47 TCGA-19-5956-01 1 229771637 229771637 A C URB2 Missense_Mutation p.D426A 0.47 deleterious(0) possibly_damaging(0.751) TCGA-19-5956-01 1 22986092 22986092 G T C1QB Missense_Mutation p.G48V 0.20 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 230339011 230339011 G T GALNT2 Missense_Mutation p.A117S 0.06 tolerated(0.38) benign(0.001) TCGA-19-5956-01 1 230398229 230398229 G A GALNT2 Intron 0.48 TCGA-19-5956-01 1 230486800 230486800 G T PGBD5 Missense_Mutation p.F197L 0.43 tolerated(0.52) possibly_damaging(0.779) TCGA-19-5956-01 1 230825859 230825859 C A COG2 Missense_Mutation p.Q632K 0.26 tolerated(0.7) benign(0.003) TCGA-19-5956-01 1 231081151 231081151 C T TTC13 Missense_Mutation p.G188E 0.06 deleterious(0.02) possibly_damaging(0.691) TCGA-19-5956-01 1 231090149 231090149 G A TTC13 Missense_Mutation p.A148V 0.38 deleterious(0) possibly_damaging(0.69) TCGA-19-5956-01 1 231413283 231413283 C A GNPAT Missense_Mutation p.L680I 0.18 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 1 231472075 231472075 C A EXOC8 Nonsense_Mutation p.E473* 0.38 TCGA-19-5956-01 1 231472836 231472836 G T EXOC8 Missense_Mutation p.P219H 0.13 deleterious(0) possibly_damaging(0.629) TCGA-19-5956-01 1 231488428 231488428 G A SPRTN Missense_Mutation p.S264N 0.43 tolerated(0.24) benign(0.01) TCGA-19-5956-01 1 231488619 231488619 C T SPRTN Silent p.L328L 0.38 TCGA-19-5956-01 1 231509756 231509756 T C EGLN1 Missense_Mutation p.I327M 0.24 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 1 231696924 231696924 C T TSNAX Nonsense_Mutation p.R140* 0.17 TCGA-19-5956-01 1 231700334 231700334 G A TSNAX Missense_Mutation p.D186N 0.47 deleterious(0.01) probably_damaging(0.988) TCGA-19-5956-01 1 23189534 23189534 T C EPHB2 Silent p.C272C 0.50 TCGA-19-5956-01 1 232577107 232577107 A G SIPA1L2 Missense_Mutation p.L1191P 0.21 tolerated(0.05) possibly_damaging(0.797) TCGA-19-5956-01 1 232577593 232577593 G A SIPA1L2 Silent p.L1153L 0.23 TCGA-19-5956-01 1 232650961 232650961 T C SIPA1L2 Missense_Mutation p.N42S 0.23 deleterious(0.02) benign(0.081) TCGA-19-5956-01 1 232942491 232942491 G T MAP10 Missense_Mutation p.K574N 0.42 tolerated(0.14) benign(0.091) TCGA-19-5956-01 1 232943212 232943212 G T MAP10 Missense_Mutation p.D815Y 0.48 deleterious(0.01) probably_damaging(0.964) TCGA-19-5956-01 1 233091413 233091413 G T NTPCR Nonsense_Mutation p.G49* 0.23 TCGA-19-5956-01 1 233134180 233134180 G A PCNXL2 Missense_Mutation p.R1870W 0.38 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 1 233190077 233190077 C T PCNXL2 Missense_Mutation p.V1430I 0.45 deleterious(0.01) possibly_damaging(0.883) TCGA-19-5956-01 1 233193082 233193082 C T PCNXL2 Intron 0.31 TCGA-19-5956-01 1 2339999 2339999 G A PEX10 Silent p.V164V 0.12 TCGA-19-5956-01 1 23405516 23405516 C T KDM1A Missense_Mutation p.T634M 0.13 tolerated(0.11) possibly_damaging(0.488) TCGA-19-5956-01 1 234458766 234458766 A G SLC35F3 Missense_Mutation p.Y417C 0.11 deleterious(0.04) probably_damaging(0.999) TCGA-19-5956-01 1 235357347 235357347 C T ARID4B Silent p.S702S 0.19 TCGA-19-5956-01 1 235386539 235386539 C T ARID4B Missense_Mutation p.R336Q 0.38 deleterious(0.02) probably_damaging(0.997) TCGA-19-5956-01 1 235397750 235397750 G A ARID4B Nonsense_Mutation p.R215* 0.19 TCGA-19-5956-01 1 235969120 235969120 A G LYST Silent p.L1106L 0.48 TCGA-19-5956-01 1 235973192 235973192 C T LYST Missense_Mutation p.R309Q 0.37 tolerated(0.48) benign(0) TCGA-19-5956-01 1 236187441 236187441 C T NID1 Missense_Mutation p.R686H 0.11 tolerated(0.29) benign(0.055) TCGA-19-5956-01 1 23637408 23637408 C T HNRNPR Missense_Mutation p.D484N 0.44 tolerated(0.42) unknown(0) TCGA-19-5956-01 1 236433250 236433250 G A ERO1LB Silent p.I49I 0.42 TCGA-19-5956-01 1 236590750 236590750 G A EDARADD Silent p.Q73Q 0.30 TCGA-19-5956-01 1 236646005 236646005 G T EDARADD 3'Flank 0.28 TCGA-19-5956-01 1 236646049 236646049 C T EDARADD 3'Flank 0.40 TCGA-19-5956-01 1 236722350 236722350 G A HEATR1 Missense_Mutation p.A1619V 0.47 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 1 236727866 236727866 G A HEATR1 Missense_Mutation p.R1511W 0.17 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 236748396 236748396 G A HEATR1 Missense_Mutation p.P724S 0.45 tolerated(0.67) benign(0.002) TCGA-19-5956-01 1 23688996 23688996 G T ZNF436 Silent p.L293L 0.12 TCGA-19-5956-01 1 236907931 236907931 G T ACTN2 Nonsense_Mutation p.E421* 0.11 TCGA-19-5956-01 1 236969527 236969527 A C MTR Missense_Mutation p.E111D 0.20 deleterious(0.04) possibly_damaging(0.903) TCGA-19-5956-01 1 23724437 23724437 C T TCEA3 Missense_Mutation p.S152N 0.13 deleterious(0.03) benign(0.001) TCGA-19-5956-01 1 237919648 237919648 G A RYR2 Missense_Mutation p.A3736T 0.42 probably_damaging(0.915) TCGA-19-5956-01 1 237947660 237947660 G A RYR2 Silent p.A4216A 0.33 TCGA-19-5956-01 1 238050775 238050775 G A ZP4 Missense_Mutation p.R214C 0.25 tolerated(0.09) benign(0.052) TCGA-19-5956-01 1 238053926 238053926 G T ZP4 Missense_Mutation p.L4M 0.24 tolerated(0.18) benign(0.008) TCGA-19-5956-01 1 240070826 240070826 C T CHRM3 Silent p.S25S 0.48 TCGA-19-5956-01 1 240072178 240072178 C A CHRM3 Missense_Mutation p.T476N 0.49 tolerated(0.19) benign(0.173) TCGA-19-5956-01 1 240256710 240256710 C T FMN2 Missense_Mutation p.S434F 0.33 unknown(0) TCGA-19-5956-01 1 240370715 240370715 G A FMN2 Missense_Mutation p.S868N 0.09 unknown(0) TCGA-19-5956-01 1 240370828 240370828 G A FMN2 Missense_Mutation p.E906K 0.18 unknown(0) TCGA-19-5956-01 1 240371983 240371983 C T FMN2 Nonsense_Mutation p.R1291* 0.42 TCGA-19-5956-01 1 240421254 240421254 T C FMN2 Silent p.L1359L 0.21 TCGA-19-5956-01 1 240492680 240492680 G A FMN2 Missense_Mutation p.R1450Q 0.27 probably_damaging(1) TCGA-19-5956-01 1 24077839 24077839 C A TCEB3 Silent p.S274S 0.46 TCGA-19-5956-01 1 24106403 24106403 G T PITHD1 Missense_Mutation p.D98Y 0.28 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 1 241798800 241798800 C T CHML Missense_Mutation p.R90H 0.46 deleterious(0.05) benign(0.302) TCGA-19-5956-01 1 241850869 241850869 G A WDR64 Missense_Mutation p.E306K 0.12 deleterious(0.01) possibly_damaging(0.493) TCGA-19-5956-01 1 24402733 24402733 C T MYOM3 Missense_Mutation p.V873M 0.46 tolerated(0.16) benign(0.017) TCGA-19-5956-01 1 24419590 24419590 G T MYOM3 Missense_Mutation p.L313M 0.24 deleterious(0.03) possibly_damaging(0.724) TCGA-19-5956-01 1 245021352 245021352 A G HNRNPU Silent p.V485V 0.08 TCGA-19-5956-01 1 245027215 245027215 T C HNRNPU Missense_Mutation p.N132S 0.12 tolerated(0.39) benign(0.292) TCGA-19-5956-01 1 24507236 24507236 A C IFNLR1 Missense_Mutation p.F56C 0.09 deleterious(0.03) possibly_damaging(0.884) TCGA-19-5956-01 1 245865986 245865986 C T KIF26B 3'UTR 0.52 TCGA-19-5956-01 1 245912894 245912894 C A SMYD3 Nonsense_Mutation p.E420* 0.53 TCGA-19-5956-01 1 245912962 245912962 A C SMYD3 Missense_Mutation p.F397C 0.20 deleterious(0) probably_damaging(0.944) TCGA-19-5956-01 1 246493821 246493821 C A SMYD3 Nonsense_Mutation p.E119* 0.30 TCGA-19-5956-01 1 24669463 24669463 C A GRHL3 Missense_Mutation p.P456H 0.40 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 246704306 246704306 G A TFB2M 3'UTR 0.34 TCGA-19-5956-01 1 246720806 246720806 G A TFB2M Nonsense_Mutation p.R145* 0.42 TCGA-19-5956-01 1 247014175 247014175 G A AHCTF1 Silent p.V1720V 0.50 TCGA-19-5956-01 1 24706310 24706310 C T STPG1 Missense_Mutation p.A99T 0.53 tolerated(0.33) benign(0.056) TCGA-19-5956-01 1 247320344 247320344 G A ZNF124 Missense_Mutation p.R132C 0.46 deleterious(0) possibly_damaging(0.814) TCGA-19-5956-01 1 247492731 247492731 G A ZNF496 Silent p.Y50Y 0.44 TCGA-19-5956-01 1 247588630 247588630 G T NLRP3 Nonsense_Mutation p.E629* 0.09 TCGA-19-5956-01 1 247695157 247695157 G A OR2C3 Silent p.Y219Y 0.45 TCGA-19-5956-01 1 24779990 24779990 A G NIPAL3 Silent p.L211L 0.29 TCGA-19-5956-01 1 247835423 247835423 G T OR13G1 Missense_Mutation p.H307Q 0.15 tolerated(0.19) benign(0.056) TCGA-19-5956-01 1 247835849 247835849 G T OR13G1 Missense_Mutation p.F165L 0.17 tolerated(0.07) possibly_damaging(0.766) TCGA-19-5956-01 1 247875344 247875344 G T OR6F1 Missense_Mutation p.F238L 0.49 deleterious(0.03) possibly_damaging(0.539) TCGA-19-5956-01 1 247902396 247902396 A G OR14K1 Silent p.G160G 0.18 TCGA-19-5956-01 1 247902751 247902751 G A OR14K1 Missense_Mutation p.A279T 0.22 deleterious(0.04) benign(0.224) TCGA-19-5956-01 1 248004787 248004787 G T OR11L1 Missense_Mutation p.R138S 0.09 tolerated(0.65) benign(0.001) TCGA-19-5956-01 1 248059557 248059557 G T OR2W3 Missense_Mutation p.R223S 0.44 deleterious(0.03) benign(0.41) TCGA-19-5956-01 1 248059682 248059682 G T OR2W3 Missense_Mutation p.S265I 0.45 deleterious(0.02) possibly_damaging(0.616) TCGA-19-5956-01 1 248201631 248201631 G T OR2L2 Missense_Mutation p.R21I 0.22 deleterious(0.03) benign(0.008) TCGA-19-5956-01 1 248343623 248343623 T G OR2M2 Missense_Mutation p.C112W 0.11 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 1 248366408 248366408 C A OR2M3 Silent p.I13I 0.12 TCGA-19-5956-01 1 248402656 248402656 C A OR2M4 Silent p.V142V 0.10 TCGA-19-5956-01 1 248436842 248436842 C T OR2T33 Missense_Mutation p.R92H 0.13 tolerated(0.46) benign(0.146) TCGA-19-5956-01 1 248524914 248524914 C T OR2T4 Missense_Mutation p.T11I 0.26 deleterious_low_confidence(0.03) benign(0) TCGA-19-5956-01 1 248551366 248551366 G A OR2T6 Missense_Mutation p.A153T 0.09 tolerated(0.08) benign(0.033) TCGA-19-5956-01 1 248616539 248616539 C T OR2T2 Silent p.V147V 0.18 TCGA-19-5956-01 1 248616929 248616929 C T OR2T2 Silent p.A277A 0.05 TCGA-19-5956-01 1 248737166 248737166 C T OR2T34 Missense_Mutation p.R298H 0.38 deleterious(0) benign(0.01) TCGA-19-5956-01 1 248814060 248814060 G A OR2T27 Silent p.N42N 0.17 TCGA-19-5956-01 1 249151689 249151689 C A ZNF692 Missense_Mutation p.E78D 0.20 tolerated(0.05) benign(0.013) TCGA-19-5956-01 1 2494637 2494637 G A TNFRSF14 Silent p.Q259Q 0.51 TCGA-19-5956-01 1 25140603 25140603 G A CLIC4 Silent p.Q67Q 0.21 TCGA-19-5956-01 1 2530110 2530110 G A MMEL1 Silent p.I387I 0.19 TCGA-19-5956-01 1 25549747 25549747 C A SYF2 3'UTR 0.17 TCGA-19-5956-01 1 26161765 26161765 T G AUNIP Missense_Mutation p.S265R 0.19 tolerated(0.22) possibly_damaging(0.883) TCGA-19-5956-01 1 26688500 26688500 C T ZNF683 Missense_Mutation p.R386H 0.06 deleterious(0.05) benign(0.121) TCGA-19-5956-01 1 26752893 26752893 C T LIN28A Nonsense_Mutation p.R192* 0.47 TCGA-19-5956-01 1 26898378 26898378 C A RPS6KA1 Silent p.I606I 0.17 TCGA-19-5956-01 1 27101701 27101701 G T ARID1A Missense_Mutation p.M1661I 0.47 benign(0.001) TCGA-19-5956-01 1 27219172 27219172 G A GPATCH3 Missense_Mutation p.R408C 0.25 deleterious(0) possibly_damaging(0.88) TCGA-19-5956-01 1 27689484 27689484 C T MAP3K6 Missense_Mutation p.A334T 0.23 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 27876104 27876104 G A AHDC1 Silent p.R841R 0.44 TCGA-19-5956-01 1 28081835 28081835 G T FAM76A Missense_Mutation p.E277D 0.19 tolerated(1) probably_damaging(0.995) TCGA-19-5956-01 1 28177034 28177034 G T PPP1R8 3'UTR 0.19 TCGA-19-5956-01 1 28835352 28835352 G A SNORA73B 3'Flank 0.53 TCGA-19-5956-01 1 28863302 28863302 C T RCC1 Silent p.G358G 0.17 TCGA-19-5956-01 1 28929913 28929913 G T TAF12 3'UTR 0.19 TCGA-19-5956-01 1 28948549 28948549 G T TAF12 Missense_Mutation p.F15L 0.10 deleterious_low_confidence(0.05) benign(0.002) TCGA-19-5956-01 1 29528463 29528463 A C MECR Missense_Mutation p.F250V 0.04 tolerated(0.21) benign(0.004) TCGA-19-5956-01 1 29638229 29638229 G T PTPRU Missense_Mutation p.E1020D 0.20 deleterious(0.04) probably_damaging(0.979) TCGA-19-5956-01 1 31842348 31842348 C T FABP3 Missense_Mutation p.E44K 0.09 tolerated(0.07) benign(0.011) TCGA-19-5956-01 1 32193056 32193056 C T BAI2 Missense_Mutation p.E1575K 0.41 tolerated(0.14) benign(0.115) TCGA-19-5956-01 1 32221862 32221864 GTT - BAI2 In_Frame_Del p.N192del 0.18 TCGA-19-5956-01 1 32259485 32259485 C T SPOCD1 Silent p.S799S 0.22 TCGA-19-5956-01 1 32495945 32495945 G T KHDRBS1 Missense_Mutation p.E143D 0.30 tolerated(0.09) benign(0.083) TCGA-19-5956-01 1 32669540 32669540 G A CCDC28B Silent p.T75T 0.10 TCGA-19-5956-01 1 32790081 32790081 C A HDAC1 Missense_Mutation p.F94L 0.21 deleterious(0.04) benign(0.329) TCGA-19-5956-01 1 33093138 33093138 C A ZBTB8OS Nonsense_Mutation p.E142* 0.21 TCGA-19-5956-01 1 33149702 33149702 G T RBBP4 3'UTR 0.21 TCGA-19-5956-01 1 33236884 33236884 G A KIAA1522 Missense_Mutation p.A702T 0.20 tolerated_low_confidence(0.33) unknown(0) TCGA-19-5956-01 1 33412117 33412117 C A RNF19B Missense_Mutation p.K345N 0.11 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 1 33625357 33625357 G A TRIM62 Silent p.I231I 0.38 TCGA-19-5956-01 1 33625400 33625400 C T TRIM62 Missense_Mutation p.R217H 0.21 deleterious(0.04) possibly_damaging(0.488) TCGA-19-5956-01 1 33625430 33625430 G A TRIM62 Missense_Mutation p.T207M 0.10 tolerated(0.08) possibly_damaging(0.563) TCGA-19-5956-01 1 33794521 33794521 G A PHC2 Missense_Mutation p.P791L 0.21 deleterious(0) probably_damaging(0.926) TCGA-19-5956-01 1 3397224 3397224 C T ARHGEF16 3'UTR 0.40 TCGA-19-5956-01 1 34066580 34066580 G A CSMD2 Silent p.L2249L 0.06 TCGA-19-5956-01 1 34090775 34090775 C T CSMD2 Silent p.S1752S 0.10 TCGA-19-5956-01 1 34191098 34191098 G A CSMD2 Silent p.R809R 0.13 TCGA-19-5956-01 1 34238305 34238305 G A CSMD2 Missense_Mutation p.R531W 0.08 tolerated(0.18) benign(0.002) TCGA-19-5956-01 1 3432081 3432081 G A MEGF6 Silent p.S205S 0.17 TCGA-19-5956-01 1 34667722 34667722 G A C1orf94 Silent p.P436P 0.45 TCGA-19-5956-01 1 3519072 3519072 G T MEGF6 Missense_Mutation p.A75D 0.14 tolerated(0.06) benign(0.098) TCGA-19-5956-01 1 35227397 35227397 C T GJB4 Missense_Mutation p.T181M 0.32 deleterious(0.01) probably_damaging(0.985) TCGA-19-5956-01 1 35227470 35227470 C A GJB4 Silent p.V205V 0.11 TCGA-19-5956-01 1 35365740 35365740 C A DLGAP3 Missense_Mutation p.K414N 0.14 deleterious(0.01) benign(0.134) TCGA-19-5956-01 1 3547444 3547444 A T WRAP73 3'UTR 0.09 TCGA-19-5956-01 1 35476083 35476083 C T ZMYM6 Missense_Mutation p.R486Q 0.38 deleterious(0.02) probably_damaging(0.981) TCGA-19-5956-01 1 35579701 35579701 T G ZMYM1 Missense_Mutation p.F757C 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 35932286 35932286 C T KIAA0319L Missense_Mutation p.G375D 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 36028033 36028033 C T NCDN Missense_Mutation p.S395L 0.43 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 36054125 36054125 G A TFAP2E Missense_Mutation p.A253T 0.15 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 1 36060351 36060351 G A TFAP2E 3'UTR 0.19 TCGA-19-5956-01 1 36213602 36213602 C T CLSPN Missense_Mutation p.A845T 0.43 deleterious(0) possibly_damaging(0.642) TCGA-19-5956-01 1 36381120 36381120 G A AGO1 Missense_Mutation p.V669M 0.09 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 36552618 36552618 G T TEKT2 Missense_Mutation p.R240M 0.09 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 1 36602878 36602878 C G TRAPPC3 Missense_Mutation p.G157R 0.43 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 1 36898181 36898181 G T OSCP1 Missense_Mutation p.L93M 0.12 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 36932440 36932440 G A CSF3R Missense_Mutation p.P704S 0.09 tolerated(0.23) benign(0) TCGA-19-5956-01 1 3701700 3701700 G A LRRC47 Missense_Mutation p.A382V 0.24 tolerated(0.17) benign(0.155) TCGA-19-5956-01 1 37291250 37291250 G T GRIK3 Missense_Mutation p.L570I 0.50 tolerated(0.11) probably_damaging(0.923) TCGA-19-5956-01 1 3739796 3739796 G A CEP104 Missense_Mutation p.P838L 0.47 tolerated(0.08) benign(0.033) TCGA-19-5956-01 1 3750466 3750466 G T CEP104 Missense_Mutation p.S540Y 0.40 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 1 3753214 3753214 G A CEP104 Missense_Mutation p.R388C 0.55 tolerated(0.17) benign(0.031) TCGA-19-5956-01 1 3775360 3775360 G A DFFB Missense_Mutation p.D65N 0.18 tolerated(0.07) benign(0.016) TCGA-19-5956-01 1 38005821 38005821 C T SNIP1 Missense_Mutation p.R288H 0.07 deleterious(0.02) benign(0.362) TCGA-19-5956-01 1 38188747 38188747 C T EPHA10 Silent p.A642A 0.42 TCGA-19-5956-01 1 38272728 38272728 C T C1orf122 5'Flank 0.13 TCGA-19-5956-01 1 38287968 38287968 G A MTF1 Missense_Mutation p.A531V 0.40 tolerated(0.11) benign(0.154) TCGA-19-5956-01 1 38304298 38304298 G A MTF1 Missense_Mutation p.R260W 0.45 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 38328022 38328022 C A INPP5B Nonsense_Mutation p.E903* 0.45 TCGA-19-5956-01 1 38484942 38484942 G A UTP11L Missense_Mutation p.A152T 0.48 deleterious(0) probably_damaging(0.969) TCGA-19-5956-01 1 39748080 39748080 G T MACF1 Intron 0.24 TCGA-19-5956-01 1 39750841 39750841 G A MACF1 Silent p.E411E 0.18 TCGA-19-5956-01 1 39776573 39776573 G T MACF1 Missense_Mutation p.E1062D 0.47 benign(0.019) TCGA-19-5956-01 1 39782144 39782144 A G MACF1 Silent p.Q1182Q 0.50 TCGA-19-5956-01 1 39783050 39783050 G A MACF1 Nonsense_Mutation p.W1256* 0.21 TCGA-19-5956-01 1 39798523 39798523 G T MACF1 Intron 0.21 TCGA-19-5956-01 1 39801022 39801022 C A MACF1 Intron 0.24 TCGA-19-5956-01 1 39877799 39877799 C T KIAA0754 Missense_Mutation p.A485V 0.40 benign(0.023) TCGA-19-5956-01 1 40126870 40126870 C T NT5C1A Missense_Mutation p.V208M 0.23 deleterious(0.01) possibly_damaging(0.908) TCGA-19-5956-01 1 40229493 40229493 C A PPIE 3'UTR 0.08 TCGA-19-5956-01 1 40431162 40431162 C T MFSD2A Missense_Mutation p.S179L 0.49 deleterious(0) possibly_damaging(0.843) TCGA-19-5956-01 1 40688289 40688289 A C RLF Missense_Mutation p.N285T 0.11 deleterious(0) probably_damaging(0.931) TCGA-19-5956-01 1 40702212 40702212 A G RLF Missense_Mutation p.D613G 0.25 tolerated(0.47) benign(0.047) TCGA-19-5956-01 1 40747071 40747071 C T ZMPSTE24 Nonsense_Mutation p.R276* 0.16 TCGA-19-5956-01 1 41235027 41235027 G T NFYC Splice_Site p.X296_splice 0.18 TCGA-19-5956-01 1 41514518 41514518 C A SCMH1 Missense_Mutation p.D374Y 0.09 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 41978727 41978727 G A HIVEP3 Silent p.L2055L 0.24 TCGA-19-5956-01 1 42045615 42045615 C G HIVEP3 Missense_Mutation p.Q1618H 0.24 probably_damaging(0.997) TCGA-19-5956-01 1 42047114 42047114 C A HIVEP3 Nonsense_Mutation p.E1119* 0.05 TCGA-19-5956-01 1 42048532 42048532 T C HIVEP3 Missense_Mutation p.N646S 0.45 benign(0.004) TCGA-19-5956-01 1 42628464 42628464 G A GUCA2A 3'UTR 0.23 TCGA-19-5956-01 1 42925659 42925659 A G PPCS 3'UTR 0.37 TCGA-19-5956-01 1 43055045 43055045 A G CCDC30 Missense_Mutation p.Q425R 0.24 tolerated(0.38) benign(0.063) TCGA-19-5956-01 1 43130552 43130552 G A PPIH Missense_Mutation p.A88T 0.23 tolerated(0.69) benign(0.004) TCGA-19-5956-01 1 43166571 43166571 A G YBX1 Missense_Mutation p.Y287C 0.30 deleterious(0.02) probably_damaging(0.99) TCGA-19-5956-01 1 43228101 43228101 C T LEPRE1 Missense_Mutation p.V171M 0.39 tolerated(0.21) benign(0.105) TCGA-19-5956-01 1 43784954 43784954 C A TIE1 Missense_Mutation p.L991I 0.19 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 1 43826200 43826200 C T CDC20 Nonsense_Mutation p.R262* 0.26 TCGA-19-5956-01 1 43908242 43908242 C A SZT2 Missense_Mutation p.L2645I 0.16 tolerated(0.4) probably_damaging(0.995) TCGA-19-5956-01 1 43917153 43917153 A G HYI Missense_Mutation p.F230L 0.12 deleterious(0.01) possibly_damaging(0.816) TCGA-19-5956-01 1 44019507 44019507 C T PTPRF Missense_Mutation p.R92W 0.13 tolerated(0.05) probably_damaging(0.997) TCGA-19-5956-01 1 44054442 44054442 C A PTPRF Missense_Mutation p.S240R 0.37 tolerated(0.05) benign(0.415) TCGA-19-5956-01 1 44069411 44069411 C T PTPRF Missense_Mutation p.A863V 0.49 tolerated(0.17) benign(0.105) TCGA-19-5956-01 1 44070860 44070860 G A PTPRF Splice_Site p.X1046_splice 0.43 TCGA-19-5956-01 1 44075149 44075149 G T PTPRF Missense_Mutation p.R1318M 0.33 deleterious(0) probably_damaging(0.95) TCGA-19-5956-01 1 44084339 44084339 G T PTPRF Missense_Mutation p.E1470D 0.22 deleterious(0.04) benign(0.398) TCGA-19-5956-01 1 44084409 44084409 G A PTPRF Missense_Mutation p.A1494T 0.16 tolerated(0.14) benign(0.065) TCGA-19-5956-01 1 44303943 44303943 C T ST3GAL3 Missense_Mutation p.P157S 0.19 deleterious(0.02) probably_damaging(0.987) TCGA-19-5956-01 1 44438152 44438152 G A DPH2 Missense_Mutation p.E471K 0.41 tolerated(1) benign(0) TCGA-19-5956-01 1 44447440 44447440 C T B4GALT2 Silent p.G160G 0.19 TCGA-19-5956-01 1 44456011 44456011 A G B4GALT2 Missense_Mutation p.D366G 0.11 deleterious(0) possibly_damaging(0.823) TCGA-19-5956-01 1 44466953 44466953 C T SLC6A9 Silent p.T479T 0.09 TCGA-19-5956-01 1 44878325 44878326 - T RNF220 Frame_Shift_Ins p.A188Cfs*8 0.24 TCGA-19-5956-01 1 45271321 45271321 C T PLK3 Missense_Mutation p.R638C 0.12 tolerated(0.1) unknown(0) TCGA-19-5956-01 1 45292900 45292900 G A PTCH2 Missense_Mutation p.A818V 0.23 tolerated(1) benign(0.004) TCGA-19-5956-01 1 45296527 45296527 C T PTCH2 Missense_Mutation p.S269N 0.09 deleterious(0.03) benign(0.016) TCGA-19-5956-01 1 45443992 45443992 G T EIF2B3 Missense_Mutation p.L97I 0.20 tolerated(1) benign(0.001) TCGA-19-5956-01 1 45469102 45469102 G A HECTD3 3'UTR 0.16 TCGA-19-5956-01 1 45923442 45923442 G A TESK2 Missense_Mutation p.R6W 0.16 deleterious_low_confidence(0) benign(0.052) TCGA-19-5956-01 1 46184880 46184880 G T IPP Missense_Mutation p.A394D 0.09 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 1 46472015 46472015 G T MAST2 Missense_Mutation p.D284Y 0.16 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 1 46751247 46751247 C T LRRC41 Missense_Mutation p.E428K 0.55 tolerated(0.37) possibly_damaging(0.502) TCGA-19-5956-01 1 46751886 46751886 G A LRRC41 Missense_Mutation p.R215W 0.16 deleterious(0.03) probably_damaging(0.924) TCGA-19-5956-01 1 46976196 46976196 G A DMBX1 Missense_Mutation p.R68H 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 47173633 47173633 G T EFCAB14 Missense_Mutation p.S142Y 0.25 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 1 47276604 47276604 C A CYP4B1 Missense_Mutation p.A102D 0.16 deleterious(0.01) probably_damaging(0.964) TCGA-19-5956-01 1 47333708 47333708 G A CYP4Z2P RNA 0.45 TCGA-19-5956-01 1 47398461 47398461 C T CYP4A11 Missense_Mutation p.A446T 0.45 deleterious(0) possibly_damaging(0.78) TCGA-19-5956-01 1 47403668 47403668 C A CYP4A11 Missense_Mutation p.D113Y 0.18 deleterious(0) probably_damaging(0.966) TCGA-19-5956-01 1 47407043 47407043 C T CYP4A11 Silent p.A21A 0.47 TCGA-19-5956-01 1 47746007 47746007 T C STIL Missense_Mutation p.K708R 0.25 tolerated(0.22) benign(0.012) TCGA-19-5956-01 1 51204594 51204595 - T FAF1 Frame_Shift_Ins p.N164Kfs*18 0.18 TCGA-19-5956-01 1 51435938 51435938 C T CDKN2C Intron 0.36 TCGA-19-5956-01 1 51436005 51436005 T G CDKN2C Intron 0.44 TCGA-19-5956-01 1 51439803 51439803 T C CDKN2C Missense_Mutation p.V123A 0.40 tolerated(0.64) benign(0.049) TCGA-19-5956-01 1 51756250 51756250 C T TTC39A Silent p.P442P 0.23 TCGA-19-5956-01 1 51822336 51822336 G T EPS15 3'UTR 0.49 TCGA-19-5956-01 1 52255266 52255266 G A NRD1 Missense_Mutation p.P1146S 0.32 tolerated(0.77) benign(0.003) TCGA-19-5956-01 1 52498315 52498315 G T KTI12 3'UTR 0.46 TCGA-19-5956-01 1 52499363 52499363 G A KTI12 Missense_Mutation p.A24V 0.17 tolerated(0.5) possibly_damaging(0.49) TCGA-19-5956-01 1 52520732 52520732 G A TXNDC12 Silent p.L13L 0.20 TCGA-19-5956-01 1 52704568 52704568 G T ZFYVE9 Missense_Mutation p.K493N 0.11 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 1 52819092 52819092 G A CC2D1B 3'UTR 0.49 TCGA-19-5956-01 1 52826135 52826135 G A CC2D1B Silent p.G188G 0.11 TCGA-19-5956-01 1 52896816 52896816 T G ZCCHC11 Missense_Mutation p.N1527T 0.12 deleterious(0) possibly_damaging(0.46) TCGA-19-5956-01 1 53068198 53068198 G A GPX7 Silent p.S39S 0.59 TCGA-19-5956-01 1 53099348 53099348 G T FAM159A Splice_Site p.X61_splice 0.41 TCGA-19-5956-01 1 53153451 53153451 G A COA7 Nonsense_Mutation p.R213* 0.12 TCGA-19-5956-01 1 53370485 53370485 G A ECHDC2 Missense_Mutation p.R179C 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 53676395 53676395 G A CPT2 Missense_Mutation p.R350H 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 54331930 54331930 T C YIPF1 Silent p.A258A 0.21 TCGA-19-5956-01 1 54474554 54474554 C A LDLRAD1 3'UTR 0.17 TCGA-19-5956-01 1 54694030 54694030 C A SSBP3 Splice_Site p.X346_splice 0.19 TCGA-19-5956-01 1 55066973 55066973 C T ACOT11 Missense_Mutation p.R306C 0.57 tolerated(0.05) benign(0.035) TCGA-19-5956-01 1 55251764 55251764 G T TTC22 Silent p.I304I 0.28 TCGA-19-5956-01 1 55273271 55273271 G A C1orf177 Missense_Mutation p.D89N 0.59 tolerated(0.11) benign(0.164) TCGA-19-5956-01 1 55307294 55307294 G T C1orf177 Intron 0.20 TCGA-19-5956-01 1 55319156 55319156 C T DHCR24 Missense_Mutation p.A450T 0.12 tolerated(0.3) benign(0.271) TCGA-19-5956-01 1 55337203 55337203 G A DHCR24 Silent p.I232I 0.44 TCGA-19-5956-01 1 55451976 55451976 C T TMEM61 Silent p.C74C 0.47 TCGA-19-5956-01 1 55544292 55544292 C T USP24 Silent p.S2411S 0.39 TCGA-19-5956-01 1 55589184 55589184 C T USP24 Silent p.S1404S 0.47 TCGA-19-5956-01 1 55603267 55603267 G T USP24 Missense_Mutation p.S1041Y 0.17 deleterious(0.01) probably_damaging(0.931) TCGA-19-5956-01 1 55613422 55613422 G A USP24 Missense_Mutation p.T673M 0.19 deleterious(0) possibly_damaging(0.724) TCGA-19-5956-01 1 55614195 55614195 G A USP24 Missense_Mutation p.R637C 0.68 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 1 57378252 57378252 C T C8A Silent p.C519C 0.17 TCGA-19-5956-01 1 57397532 57397532 G T C8B Silent p.I524I 0.09 TCGA-19-5956-01 1 59042478 59042478 G A TACSTD2 Silent p.R117R 0.50 TCGA-19-5956-01 1 59150877 59150877 C T MYSM1 Missense_Mutation p.S149N 0.21 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 1 59248716 59248716 G T JUN Missense_Mutation p.F9L 0.10 tolerated(0.09) benign(0.251) TCGA-19-5956-01 1 5964847 5964847 C T NPHP4 Missense_Mutation p.R658Q 0.23 tolerated(0.38) benign(0.009) TCGA-19-5956-01 1 60104013 60104013 G A FGGY Missense_Mutation p.R396Q 0.45 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 60228237 60228237 C T FGGY Missense_Mutation p.A570V 0.16 tolerated(0.15) benign(0.019) TCGA-19-5956-01 1 60330878 60330878 G T HOOK1 Nonsense_Mutation p.E569* 0.19 TCGA-19-5956-01 1 60456258 60456258 G A C1orf87 3'UTR 0.52 TCGA-19-5956-01 1 6186736 6186736 C T CHD5 Missense_Mutation p.R1325Q 0.40 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 1 62237106 62237106 T C INADL Silent p.D176D 0.35 TCGA-19-5956-01 1 62594570 62594570 G T INADL Missense_Mutation p.D1742Y 0.42 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 1 62672582 62672582 G A L1TD1 Silent p.E94E 0.57 TCGA-19-5956-01 1 62672636 62672636 A T L1TD1 Missense_Mutation p.K112N 0.13 tolerated(0.17) unknown(0) TCGA-19-5956-01 1 62676988 62676988 G T L1TD1 Missense_Mutation p.D848Y 0.25 deleterious(0) probably_damaging(0.942) TCGA-19-5956-01 1 62739326 62739326 C T KANK4 Missense_Mutation p.E484K 0.47 tolerated(0.28) benign(0) TCGA-19-5956-01 1 62739927 62739927 C T KANK4 Silent p.T283T 0.42 TCGA-19-5956-01 1 62910932 62910932 A C USP1 Missense_Mutation p.I361L 0.46 tolerated(0.56) benign(0.012) TCGA-19-5956-01 1 62911044 62911044 C A USP1 Missense_Mutation p.S398Y 0.10 deleterious(0.04) benign(0.328) TCGA-19-5956-01 1 62958486 62958486 C T DOCK7 Silent p.A1719A 0.17 TCGA-19-5956-01 1 63005433 63005433 C T DOCK7 Missense_Mutation p.R1028Q 0.48 tolerated(0.05) probably_damaging(0.94) TCGA-19-5956-01 1 63024731 63024731 C T DOCK7 Missense_Mutation p.R787Q 0.46 tolerated(0.38) benign(0.024) TCGA-19-5956-01 1 63063344 63063344 G T ANGPTL3 Missense_Mutation p.R36I 0.19 deleterious(0) possibly_damaging(0.878) TCGA-19-5956-01 1 6313912 6313912 C T GPR153 Missense_Mutation p.V218M 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 1 63885052 63885052 G A ALG6 Silent p.A333A 0.47 TCGA-19-5956-01 1 64089117 64089117 C T PGM1 5'UTR 0.45 TCGA-19-5956-01 1 64643297 64643297 T C ROR1 Missense_Mutation p.S525P 0.19 tolerated(0.27) possibly_damaging(0.718) TCGA-19-5956-01 1 64643594 64643594 G A ROR1 Missense_Mutation p.G624R 0.36 tolerated(0.14) probably_damaging(0.957) TCGA-19-5956-01 1 65117968 65117968 C A CACHD1 Silent p.S454S 0.19 TCGA-19-5956-01 1 65268659 65268659 C T RAVER2 Missense_Mutation p.A369V 0.50 tolerated(0.08) benign(0.026) TCGA-19-5956-01 1 65321305 65321305 G A JAK1 Missense_Mutation p.S512L 0.46 tolerated(0.07) benign(0.178) TCGA-19-5956-01 1 6536077 6536077 G A PLEKHG5 Silent p.N100N 0.44 TCGA-19-5956-01 1 6556582 6556582 C T PLEKHG5 Missense_Mutation p.A41T 0.15 tolerated(0.54) benign(0.05) TCGA-19-5956-01 1 6639526 6639526 G A TAS1R1 Missense_Mutation p.G803D 0.26 tolerated(0.21) benign(0.048) TCGA-19-5956-01 1 66798276 66798276 G T PDE4B Silent p.R240R 0.48 TCGA-19-5956-01 1 67794068 67794068 G A IL12RB2 Splice_Site p.X222_splice 0.07 TCGA-19-5956-01 1 67861690 67861690 C A IL12RB2 Missense_Mutation p.S836Y 0.45 deleterious(0) possibly_damaging(0.655) TCGA-19-5956-01 1 68620861 68620861 A C WLS Missense_Mutation p.L194R 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 1 68915630 68915630 G T RPE65 5'UTR 0.18 TCGA-19-5956-01 1 69666 69666 C T OR4F5 Silent p.V192V 0.18 TCGA-19-5956-01 1 69770 69770 C T OR4F5 Missense_Mutation p.S227F 0.33 deleterious(0.01) possibly_damaging(0.486) TCGA-19-5956-01 1 70477584 70477584 A C LRRC7 Missense_Mutation p.N332T 0.27 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 1 70503896 70503896 C T LRRC7 Missense_Mutation p.P759S 0.42 deleterious_low_confidence(0) benign(0.437) TCGA-19-5956-01 1 70504813 70504813 A C LRRC7 Missense_Mutation p.K1064N 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 1 70587606 70587606 G T LRRC7 3'UTR 0.16 TCGA-19-5956-01 1 70614190 70614190 G A LRRC40 Silent p.L561L 0.21 TCGA-19-5956-01 1 70687262 70687262 C A SRSF11 Intron 0.47 TCGA-19-5956-01 1 70716331 70716331 A G SRSF11 Missense_Mutation p.D433G 0.30 deleterious_low_confidence(0.01) probably_damaging(0.98) TCGA-19-5956-01 1 70771958 70771958 C T ANKRD13C Missense_Mutation p.R242Q 0.37 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 1 70904409 70904409 G T CTH Missense_Mutation p.R364I 0.17 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 1 71535019 71535019 G A ZRANB2 Missense_Mutation p.S237L 0.19 deleterious(0) unknown(0) TCGA-19-5956-01 1 72748139 72748139 C T NEGR1 Silent p.S13S 0.44 TCGA-19-5956-01 1 74649345 74649345 T G LRRIQ3 Missense_Mutation p.E8D 0.31 tolerated(0.15) benign(0.015) TCGA-19-5956-01 1 74670108 74670108 C T FPGT Missense_Mutation p.A126V 0.23 tolerated(0.24) benign(0.042) TCGA-19-5956-01 1 74670260 74670260 G T FPGT Nonsense_Mutation p.E177* 0.09 TCGA-19-5956-01 1 74954882 74954882 G A TNNI3K Missense_Mutation p.E812K 0.45 tolerated(0.26) benign(0.162) TCGA-19-5956-01 1 74954918 74954918 C A TNNI3K Missense_Mutation p.L824I 0.19 deleterious(0.02) benign(0.382) TCGA-19-5956-01 1 75055632 75055632 G T C1orf173 Missense_Mutation p.S620Y 0.15 deleterious(0) possibly_damaging(0.861) TCGA-19-5956-01 1 75609011 75609011 G T LHX8 Nonsense_Mutation p.E200* 0.14 TCGA-19-5956-01 1 76199270 76199270 G A ACADM Missense_Mutation p.G119E 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 1 76228411 76228411 T G ACADM Missense_Mutation p.I414S 0.40 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 1 76877955 76877955 G A ST6GALNAC3 Missense_Mutation p.R159H 0.13 probably_damaging(0.995) TCGA-19-5956-01 1 7700505 7700505 G A CAMTA1 Missense_Mutation p.E186K 0.21 deleterious(0.02) probably_damaging(0.986) TCGA-19-5956-01 1 7723990 7723990 C A CAMTA1 Silent p.S461S 0.16 TCGA-19-5956-01 1 7798028 7798028 G T CAMTA1 Missense_Mutation p.R1223I 0.40 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-19-5956-01 1 78001693 78001693 C A AK5 Silent p.A530A 0.09 TCGA-19-5956-01 1 7805946 7805946 G A CAMTA1 Missense_Mutation p.S1471N 0.36 tolerated(0.07) probably_damaging(0.985) TCGA-19-5956-01 1 7806041 7806041 A G CAMTA1 Missense_Mutation p.T1503A 0.11 tolerated(0.64) benign(0.006) TCGA-19-5956-01 1 78177434 78177434 G A USP33 Missense_Mutation p.R833W 0.16 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 1 78183655 78183655 C T USP33 Silent p.P636P 0.17 TCGA-19-5956-01 1 78191425 78191425 C T USP33 Silent p.S417S 0.40 TCGA-19-5956-01 1 78383864 78383864 G T NEXN Missense_Mutation p.R118M 0.13 deleterious(0) possibly_damaging(0.806) TCGA-19-5956-01 1 78560749 78560749 G T GIPC2 Missense_Mutation p.K180N 0.24 deleterious(0.01) benign(0.364) TCGA-19-5956-01 1 78591646 78591646 G A GIPC2 Missense_Mutation p.A266T 0.10 deleterious(0.01) probably_damaging(0.992) TCGA-19-5956-01 1 7895829 7895829 C T PER3 Silent p.S1065S 0.17 TCGA-19-5956-01 1 7902828 7902828 A G PER3 3'UTR 0.23 TCGA-19-5956-01 1 79128436 79128436 G A IFI44 Silent p.S387S 0.36 TCGA-19-5956-01 1 8074127 8074127 C A ERRFI1 Missense_Mutation p.D178Y 0.21 deleterious(0) probably_damaging(0.947) TCGA-19-5956-01 1 82417670 82417670 T C LPHN2 Silent p.L542L 0.08 TCGA-19-5956-01 1 82433837 82433837 G T LPHN2 Missense_Mutation p.S809I 0.13 deleterious(0) probably_damaging(0.937) TCGA-19-5956-01 1 82450343 82450343 C T LPHN2 Missense_Mutation p.S1103L 0.51 deleterious(0) benign(0.272) TCGA-19-5956-01 1 8424130 8424130 G A RERE Missense_Mutation p.R576W 0.19 probably_damaging(0.998) TCGA-19-5956-01 1 84348820 84348820 C A TTLL7 Splice_Site p.X790_splice 0.24 TCGA-19-5956-01 1 84356079 84356079 C T TTLL7 Missense_Mutation p.R765Q 0.51 deleterious(0.02) benign(0.084) TCGA-19-5956-01 1 84700894 84700894 G A PRKACB Missense_Mutation p.G368D 0.07 deleterious(0.05) benign(0.212) TCGA-19-5956-01 1 84880349 84880349 G A DNASE2B Missense_Mutation p.R295Q 0.53 tolerated(0.58) benign(0.016) TCGA-19-5956-01 1 85020872 85020872 C T CTBS Missense_Mutation p.G323D 0.43 deleterious(0.03) probably_damaging(0.957) TCGA-19-5956-01 1 85405362 85405362 C A MCOLN2 Missense_Mutation p.E328D 0.24 tolerated(0.33) benign(0.063) TCGA-19-5956-01 1 85498420 85498420 G A MCOLN3 Missense_Mutation p.R231C 0.11 tolerated(0.18) possibly_damaging(0.836) TCGA-19-5956-01 1 85587439 85587439 C T WDR63 Silent p.G641G 0.45 TCGA-19-5956-01 1 85624534 85624534 C T SYDE2 Missense_Mutation p.D1162N 0.11 tolerated(0.28) benign(0.007) TCGA-19-5956-01 1 86047795 86047795 C T CYR61 Silent p.T154T 0.13 TCGA-19-5956-01 1 86173731 86173731 C T ZNHIT6 Silent p.K79K 0.37 TCGA-19-5956-01 1 86210425 86210425 C A COL24A1 Missense_Mutation p.K1532N 0.18 deleterious(0) probably_damaging(0.932) TCGA-19-5956-01 1 86437031 86437031 C A COL24A1 Nonsense_Mutation p.G804* 0.09 TCGA-19-5956-01 1 86590655 86590655 G T COL24A1 Missense_Mutation p.P455H 0.16 deleterious(0.01) possibly_damaging(0.503) TCGA-19-5956-01 1 86591100 86591100 G A COL24A1 Missense_Mutation p.H307Y 0.23 tolerated(1) benign(0.001) TCGA-19-5956-01 1 86591408 86591408 G T COL24A1 Missense_Mutation p.T204N 0.46 tolerated(0.31) possibly_damaging(0.883) TCGA-19-5956-01 1 87379902 87379902 T G SEP15 5'UTR 0.44 TCGA-19-5956-01 1 881571 881571 C A NOC2L Missense_Mutation p.E633D 0.12 deleterious(0) probably_damaging(0.96) TCGA-19-5956-01 1 891327 891327 C T NOC2L Missense_Mutation p.G225E 0.13 tolerated(1) benign(0.009) TCGA-19-5956-01 1 8926348 8926348 C A ENO1 Missense_Mutation p.E219D 0.15 tolerated_low_confidence(0.56) benign(0.399) TCGA-19-5956-01 1 89528849 89528849 C T GBP1 Silent p.A23A 0.42 TCGA-19-5956-01 1 89573928 89573928 C A GBP2 Missense_Mutation p.R569I 0.20 tolerated(0.05) benign(0.013) TCGA-19-5956-01 1 90058651 90058651 C T LRRC8B 3'UTR 0.35 TCGA-19-5956-01 1 90179770 90179770 C A LRRC8C Silent p.L547L 0.45 TCGA-19-5956-01 1 91180105 91180105 G T BARHL2 Silent p.T278T 0.35 TCGA-19-5956-01 1 91382257 91382257 C T ZNF644 3'UTR 0.33 TCGA-19-5956-01 1 91405097 91405097 G A ZNF644 Missense_Mutation p.T605M 0.08 tolerated(0.79) benign(0.001) TCGA-19-5956-01 1 91405809 91405809 C A ZNF644 Missense_Mutation p.D368Y 0.39 tolerated(0.13) possibly_damaging(0.707) TCGA-19-5956-01 1 91406292 91406292 A G ZNF644 Missense_Mutation p.S207P 0.08 tolerated(0.1) benign(0.011) TCGA-19-5956-01 1 91781702 91781702 C A HFM1 Nonsense_Mutation p.E980* 0.22 TCGA-19-5956-01 1 91843971 91843971 G T HFM1 Missense_Mutation p.L409I 0.11 deleterious(0.01) probably_damaging(0.974) TCGA-19-5956-01 1 92733514 92733514 G T GLMN Missense_Mutation p.L352I 0.18 tolerated(0.42) benign(0.219) TCGA-19-5956-01 1 92769550 92769550 C A RPAP2 Missense_Mutation p.P84H 0.09 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 1 92789303 92789303 G T RPAP2 Missense_Mutation p.D276Y 0.15 deleterious(0.01) benign(0.002) TCGA-19-5956-01 1 92789652 92789652 C T RPAP2 Missense_Mutation p.A392V 0.46 tolerated(0.27) benign(0.33) TCGA-19-5956-01 1 92941635 92941635 C A GFI1 Missense_Mutation p.R407M 0.20 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 1 93594885 93594885 G A MTF2 Missense_Mutation p.R347Q 0.46 deleterious(0) possibly_damaging(0.588) TCGA-19-5956-01 1 93602388 93602388 A C MTF2 Missense_Mutation p.E529A 0.50 tolerated(0.74) benign(0.003) TCGA-19-5956-01 1 93712419 93712419 C T CCDC18 Missense_Mutation p.R1089C 0.33 deleterious(0.02) probably_damaging(0.969) TCGA-19-5956-01 1 93730373 93730373 C A CCDC18 Missense_Mutation p.A1320D 0.17 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 1 93987674 93987674 C T FNBP1L Missense_Mutation p.S59F 0.44 deleterious(0.01) possibly_damaging(0.575) TCGA-19-5956-01 1 94048406 94048406 G A BCAR3 Missense_Mutation p.R380W 0.48 deleterious(0.01) possibly_damaging(0.863) TCGA-19-5956-01 1 9416463 9416463 C A SPSB1 Missense_Mutation p.F171L 0.08 tolerated(0.17) benign(0.246) TCGA-19-5956-01 1 94343360 94343360 C T DNTTIP2 Missense_Mutation p.R44Q 0.51 tolerated(1) benign(0.001) TCGA-19-5956-01 1 94354404 94354404 C A GCLM 3'UTR 0.18 TCGA-19-5956-01 1 94354655 94354655 G A GCLM Missense_Mutation p.A239V 0.29 tolerated(0.27) benign(0.011) TCGA-19-5956-01 1 94953478 94953478 C T ABCD3 Nonsense_Mutation p.R366* 0.56 TCGA-19-5956-01 1 94995968 94995968 C T F3 3'UTR 0.25 TCGA-19-5956-01 1 95001656 95001656 C T F3 Missense_Mutation p.D93N 0.23 tolerated(0.1) benign(0.22) TCGA-19-5956-01 1 95293079 95293079 A C SLC44A3 Missense_Mutation p.N99H 0.11 deleterious(0.03) possibly_damaging(0.897) TCGA-19-5956-01 1 9775933 9775933 G A PIK3CD Missense_Mutation p.D133N 0.20 tolerated(0.71) benign(0.017) TCGA-19-5956-01 1 99772116 99772116 C T LPPR4 Silent p.D614D 0.23 TCGA-19-5956-01 20 10033888 10033888 C A ANKEF1 Missense_Mutation p.L667M 0.48 tolerated(0.12) benign(0.003) TCGA-19-5956-01 20 10036266 10036266 C T ANKEF1 Silent p.I763I 0.10 TCGA-19-5956-01 20 10541369 10541369 G T SLX4IP Nonsense_Mutation p.E47* 0.22 TCGA-19-5956-01 20 11903784 11903784 G A BTBD3 Missense_Mutation p.D347N 0.16 tolerated(0.59) benign(0.008) TCGA-19-5956-01 20 13055091 13055091 A T SPTLC3 Nonsense_Mutation p.K185* 0.09 TCGA-19-5956-01 20 13098226 13098226 G A SPTLC3 Missense_Mutation p.D336N 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 1352783 1352783 G A FKBP1A Silent p.F100F 0.49 TCGA-19-5956-01 20 13756626 13756626 C T ESF1 Missense_Mutation p.E310K 0.50 deleterious(0.01) probably_damaging(0.985) TCGA-19-5956-01 20 13767967 13767967 C T NDUFAF5 Missense_Mutation p.R78W 0.48 deleterious(0) probably_damaging(0.934) TCGA-19-5956-01 20 13847443 13847443 C T SEL1L2 Missense_Mutation p.A437T 0.45 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 139473 139473 C A DEFB127 Silent p.I36I 0.55 TCGA-19-5956-01 20 13976451 13976451 G T MACROD2 Missense_Mutation p.E14D 0.21 tolerated(0.06) probably_damaging(0.987) TCGA-19-5956-01 20 1426360 1426360 G A NSFL1C Missense_Mutation p.R303W 0.55 deleterious(0.03) possibly_damaging(0.829) TCGA-19-5956-01 20 1456933 1456933 G A SIRPB2 Missense_Mutation p.T303I 0.11 tolerated(0.14) benign(0.006) TCGA-19-5956-01 20 15967765 15967765 C A MACROD2 Missense_Mutation p.P372Q 0.12 deleterious_low_confidence(0.03) benign(0.14) TCGA-19-5956-01 20 1616187 1616187 G T SIRPG Silent p.V269V 0.30 TCGA-19-5956-01 20 16351271 16351271 T G KIF16B Missense_Mutation p.K1153T 0.20 deleterious_low_confidence(0.01) benign(0.138) TCGA-19-5956-01 20 16360078 16360078 C A KIF16B Nonsense_Mutation p.E857* 0.08 TCGA-19-5956-01 20 16362364 16362364 C A KIF16B Nonsense_Mutation p.E605* 0.13 TCGA-19-5956-01 20 16385537 16385537 G A KIF16B Silent p.L569L 0.26 TCGA-19-5956-01 20 16486665 16486665 A G KIF16B Splice_Site p.X290_splice 0.38 TCGA-19-5956-01 20 17207941 17207941 C T PCSK2 5'UTR 0.19 TCGA-19-5956-01 20 17417447 17417447 C T PCSK2 Silent p.S268S 0.46 TCGA-19-5956-01 20 17475472 17475472 T G BFSP1 Missense_Mutation p.E415D 0.47 tolerated(0.41) benign(0.008) TCGA-19-5956-01 20 17479485 17479485 G A BFSP1 Silent p.I312I 0.65 TCGA-19-5956-01 20 17608297 17608297 G A RRBP1 Missense_Mutation p.A494V 0.34 tolerated(0.1) possibly_damaging(0.695) TCGA-19-5956-01 20 18125797 18125797 C T CSRP2BP Intron 0.55 TCGA-19-5956-01 20 18142572 18142572 G A CSRP2BP Missense_Mutation p.R264Q 0.44 deleterious(0.05) possibly_damaging(0.603) TCGA-19-5956-01 20 18142824 18142824 G T CSRP2BP Missense_Mutation p.S348I 0.23 tolerated(0.12) probably_damaging(0.983) TCGA-19-5956-01 20 18162365 18162365 G A CSRP2BP Silent p.P561P 0.20 TCGA-19-5956-01 20 18371073 18371073 C T DZANK1 Missense_Mutation p.G614R 0.18 deleterious(0) possibly_damaging(0.809) TCGA-19-5956-01 20 19565691 19565691 C T SLC24A3 Missense_Mutation p.S167L 0.23 deleterious(0) probably_damaging(0.937) TCGA-19-5956-01 20 19937366 19937366 G A RIN2 Missense_Mutation p.R138Q 0.14 deleterious(0) benign(0.025) TCGA-19-5956-01 20 19955407 19955407 A C RIN2 Silent p.I295I 0.25 TCGA-19-5956-01 20 19981526 19981526 C T RIN2 Silent p.N927N 0.08 TCGA-19-5956-01 20 20582340 20582340 C T RALGAPA2 Missense_Mutation p.R730H 0.14 deleterious(0) probably_damaging(0.943) TCGA-19-5956-01 20 20599942 20599942 G A RALGAPA2 Silent p.A506A 0.36 TCGA-19-5956-01 20 21312958 21312958 G A XRN2 Silent p.P246P 0.21 TCGA-19-5956-01 20 21328838 21328838 G T XRN2 Missense_Mutation p.D574Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 20 21689262 21689262 G A PAX1 Missense_Mutation p.R328H 0.14 deleterious_low_confidence(0.01) probably_damaging(0.95) TCGA-19-5956-01 20 2290969 2290969 A G TGM3 Silent p.G109G 0.40 TCGA-19-5956-01 20 23066296 23066296 G A CD93 Silent p.F178F 0.28 TCGA-19-5956-01 20 23350291 23350291 C T GZF1 Silent p.R566R 0.50 TCGA-19-5956-01 20 23549122 23549122 C T CST9L 5'UTR 0.23 TCGA-19-5956-01 20 23614613 23614613 G T CST3 Silent p.I127I 0.29 TCGA-19-5956-01 20 23966328 23966328 C T GGTLC1 Silent p.T169T 0.44 TCGA-19-5956-01 20 24523712 24523712 G A SYNDIG1 5'UTR 0.26 TCGA-19-5956-01 20 24944604 24944604 C A APMAP Nonsense_Mutation p.E366* 0.48 TCGA-19-5956-01 20 24950942 24950942 C A APMAP Missense_Mutation p.D202Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 20 25056921 25056921 C A VSX1 Missense_Mutation p.Q358H 0.19 deleterious(0) benign(0.365) TCGA-19-5956-01 20 25273064 25273064 G A PYGB Silent p.S664S 0.20 TCGA-19-5956-01 20 25284219 25284219 G A ABHD12 Silent p.D332D 0.17 TCGA-19-5956-01 20 25319864 25319864 G A ABHD12 Silent p.F105F 0.19 TCGA-19-5956-01 20 2637140 2637140 C T NOP56 Silent p.I368I 0.45 TCGA-19-5956-01 20 2637504 2637504 G A NOP56 Missense_Mutation p.R415Q 0.10 tolerated(0.09) benign(0.053) TCGA-19-5956-01 20 2639463 2639463 G A IDH3B Silent p.G364G 0.27 TCGA-19-5956-01 20 2776948 2776948 C T CPXM1 Missense_Mutation p.R396H 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 2816251 2816251 G A PCED1A Missense_Mutation p.P408S 0.20 tolerated(0.06) benign(0.021) TCGA-19-5956-01 20 2840720 2840720 C T VPS16 Missense_Mutation p.R55W 0.22 deleterious(0) possibly_damaging(0.863) TCGA-19-5956-01 20 2985771 2985771 C T PTPRA Nonsense_Mutation p.R270* 0.25 TCGA-19-5956-01 20 29960755 29960755 C T DEFB118 Nonsense_Mutation p.R52* 0.49 TCGA-19-5956-01 20 29965048 29965048 C A DEFB118 3'Flank 0.23 TCGA-19-5956-01 20 30064423 30064423 C T REM1 Missense_Mutation p.P59S 0.47 tolerated(0.91) benign(0.004) TCGA-19-5956-01 20 3016528 3016528 C T PTPRA Silent p.I713I 0.52 TCGA-19-5956-01 20 30253850 30253850 C T BCL2L1 Missense_Mutation p.E202K 0.53 tolerated(0.18) benign(0.001) TCGA-19-5956-01 20 30408254 30408254 C T MYLK2 Silent p.P126P 0.51 TCGA-19-5956-01 20 30432415 30432415 C T FOXS1 Missense_Mutation p.G311S 0.43 tolerated(0.73) benign(0.004) TCGA-19-5956-01 20 30432975 30432975 C T FOXS1 Missense_Mutation p.R124Q 0.37 tolerated(0.08) benign(0.038) TCGA-19-5956-01 20 30556557 30556557 C A XKR7 Silent p.V193V 0.25 TCGA-19-5956-01 20 30584885 30584885 C T XKR7 Silent p.F455F 0.19 TCGA-19-5956-01 20 30584941 30584941 G T XKR7 Missense_Mutation p.R474M 0.14 deleterious(0) probably_damaging(0.95) TCGA-19-5956-01 20 30686910 30686910 C T HCK Silent p.I450I 0.43 TCGA-19-5956-01 20 30789848 30789848 G A PLAGL2 Missense_Mutation p.S45L 0.40 deleterious(0) benign(0.042) TCGA-19-5956-01 20 30818681 30818681 G A POFUT1 Silent p.P265P 0.06 TCGA-19-5956-01 20 31017708 31017708 C A ASXL1 Missense_Mutation p.F190L 0.11 tolerated(0.08) probably_damaging(0.98) TCGA-19-5956-01 20 31022999 31022999 C T ASXL1 Silent p.G828G 0.21 TCGA-19-5956-01 20 31023667 31023667 G A ASXL1 Missense_Mutation p.R1051H 0.27 tolerated(0.08) benign(0.054) TCGA-19-5956-01 20 31828125 31828125 G T BPIFA1 Missense_Mutation p.R172M 0.20 deleterious(0.01) probably_damaging(0.926) TCGA-19-5956-01 20 31830330 31830330 C A BPIFA1 Silent p.V256V 0.17 TCGA-19-5956-01 20 32302514 32302514 C T PXMP4 Missense_Mutation p.A48T 0.21 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 20 32354757 32354757 C T ZNF341 Silent p.I434I 0.24 TCGA-19-5956-01 20 32850692 32850692 C A ASIP Missense_Mutation p.S72Y 0.48 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 20 33001610 33001610 G T ITCH Missense_Mutation p.D134Y 0.50 deleterious(0.02) probably_damaging(0.952) TCGA-19-5956-01 20 33068494 33068494 G T ITCH Nonsense_Mutation p.E678* 0.16 TCGA-19-5956-01 20 33330561 33330561 T G NCOA6 Missense_Mutation p.K1167Q 0.18 probably_damaging(0.987) TCGA-19-5956-01 20 33589837 33589837 A T MYH7B Missense_Mutation p.E1963D 0.23 probably_damaging(0.995) TCGA-19-5956-01 20 34022156 34022156 G T GDF5 Missense_Mutation p.L353M 0.49 deleterious(0.05) possibly_damaging(0.71) TCGA-19-5956-01 20 34078526 34078526 A G CEP250 Missense_Mutation p.K884E 0.08 possibly_damaging(0.72) TCGA-19-5956-01 20 34092296 34092296 C T CEP250 Silent p.Y2033Y 0.41 TCGA-19-5956-01 20 34144070 34144070 C T ERGIC3 Intron 0.47 TCGA-19-5956-01 20 34219661 34219661 G T CPNE1 Missense_Mutation p.F197L 0.08 deleterious(0.03) possibly_damaging(0.903) TCGA-19-5956-01 20 34302226 34302226 A G RBM39 Missense_Mutation p.V326A 0.51 deleterious(0.04) benign(0.14) TCGA-19-5956-01 20 34435318 34435318 G A PHF20 Missense_Mutation p.R101H 0.12 deleterious(0) benign(0.021) TCGA-19-5956-01 20 34487411 34487411 C T PHF20 Silent p.L468L 0.39 TCGA-19-5956-01 20 34809825 34809825 C T EPB41L1 Nonsense_Mutation p.R827* 0.35 TCGA-19-5956-01 20 35127697 35127697 C T DLGAP4 Missense_Mutation p.A688V 0.16 tolerated(0.1) benign(0.063) TCGA-19-5956-01 20 35433201 35433201 C T SOGA1 Silent p.Q1008Q 0.20 TCGA-19-5956-01 20 35507502 35507502 C T TLDC2 Missense_Mutation p.T83M 0.50 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 35579937 35579937 T G SAMHD1 Missense_Mutation p.E37A 0.04 tolerated(0.49) benign(0.002) TCGA-19-5956-01 20 35632140 35632140 C T RBL1 Missense_Mutation p.A1001T 0.44 tolerated(0.18) benign(0.073) TCGA-19-5956-01 20 35635890 35635890 T G RBL1 Missense_Mutation p.K932T 0.07 tolerated(0.11) benign(0.1) TCGA-19-5956-01 20 3650200 3650200 C T ADAM33 Nonsense_Mutation p.W775* 0.25 TCGA-19-5956-01 20 36641881 36641881 G A TTI1 Missense_Mutation p.A113V 0.23 tolerated(0.09) probably_damaging(0.935) TCGA-19-5956-01 20 36856566 36856566 C T KIAA1755 Missense_Mutation p.A650T 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 368699 368699 G A TRIB3 Silent p.R15R 0.07 TCGA-19-5956-01 20 36982710 36982710 G A LBP Missense_Mutation p.S132N 0.14 tolerated(0.2) benign(0.012) TCGA-19-5956-01 20 37076736 37076736 C T SNHG11 Intron 0.18 TCGA-19-5956-01 20 37117259 37117259 G T RALGAPB Nonsense_Mutation p.E62* 0.08 TCGA-19-5956-01 20 37203664 37203664 G T RALGAPB 3'UTR 0.28 TCGA-19-5956-01 20 372062 372062 T G TRIB3 Missense_Mutation p.H141Q 0.21 deleterious(0.02) possibly_damaging(0.882) TCGA-19-5956-01 20 37531415 37531415 G A PPP1R16B Missense_Mutation p.D226N 0.21 tolerated(0.25) probably_damaging(0.999) TCGA-19-5956-01 20 3786513 3786513 C T CDC25B 3'UTR 0.40 TCGA-19-5956-01 20 3846438 3846438 G A MAVS Missense_Mutation p.V423M 0.22 tolerated(0.13) benign(0.003) TCGA-19-5956-01 20 3888728 3888728 G A PANK2 Missense_Mutation p.G262S 0.07 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 20 390611 390611 C T RBCK1 Nonsense_Mutation p.Q37* 0.08 TCGA-19-5956-01 20 39725902 39725902 C T TOP1 Missense_Mutation p.T258M 0.21 deleterious(0.02) probably_damaging(0.964) TCGA-19-5956-01 20 39750412 39750412 A G TOP1 Missense_Mutation p.K676R 0.12 tolerated(0.4) benign(0) TCGA-19-5956-01 20 39793712 39793712 A G PLCG1 Missense_Mutation p.N453D 0.15 tolerated(0.11) possibly_damaging(0.665) TCGA-19-5956-01 20 39832201 39832201 C T ZHX3 Silent p.K452K 0.55 TCGA-19-5956-01 20 39832417 39832417 G A ZHX3 Silent p.I380I 0.20 TCGA-19-5956-01 20 39993749 39993749 C A EMILIN3 Missense_Mutation p.Q72H 0.23 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 40045903 40045903 G A CHD6 Nonsense_Mutation p.R2072* 0.22 TCGA-19-5956-01 20 40054741 40054741 C A CHD6 Missense_Mutation p.S1374I 0.18 tolerated(0.12) benign(0.001) TCGA-19-5956-01 20 40748583 40748583 G A PTPRT Missense_Mutation p.A959V 0.45 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 20 40980821 40980821 A T PTPRT Silent p.G555G 0.24 TCGA-19-5956-01 20 42311454 42311454 C T MYBL2 Silent p.C69C 0.34 TCGA-19-5956-01 20 42333903 42333903 C T MYBL2 Silent p.S470S 0.20 TCGA-19-5956-01 20 42635201 42635201 G A TOX2 Silent p.Q60Q 0.38 TCGA-19-5956-01 20 42835589 42835589 G A OSER1 Silent p.S3S 0.15 TCGA-19-5956-01 20 43030034 43030034 G A HNF4A Missense_Mutation p.V8I 0.08 tolerated_low_confidence(0.18) benign(0.001) TCGA-19-5956-01 20 43058380 43058380 C T HNF4A 3'UTR 0.20 TCGA-19-5956-01 20 43118069 43118069 C T TTPAL Missense_Mutation p.P306S 0.17 tolerated(0.36) benign(0.002) TCGA-19-5956-01 20 43804580 43804580 T G PI3 Missense_Mutation p.V53G 0.10 tolerated(0.09) benign(0.003) TCGA-19-5956-01 20 43933172 43933172 C T MATN4 Silent p.T113T 0.29 TCGA-19-5956-01 20 44108346 44108346 G A WFDC2 Intron 0.38 TCGA-19-5956-01 20 44166624 44166624 C A WFDC6 Missense_Mutation p.K67N 0.09 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 20 44180598 44180598 A C WFDC8 Intron 0.24 TCGA-19-5956-01 20 44184382 44184382 A G WFDC8 Missense_Mutation p.F135L 0.12 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 44238797 44238797 G A WFDC9 Silent p.L8L 0.22 TCGA-19-5956-01 20 44486612 44486612 G T ZSWIM3 Missense_Mutation p.D50Y 0.46 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 20 44505644 44505644 G A ZSWIM3 Silent p.S149S 0.14 TCGA-19-5956-01 20 44527553 44527553 A G PLTP 3'UTR 0.37 TCGA-19-5956-01 20 44538175 44538175 C T PLTP Silent p.A155A 0.45 TCGA-19-5956-01 20 44588000 44588000 C T ZNF335 Missense_Mutation p.R698Q 0.21 tolerated(1) benign(0.011) TCGA-19-5956-01 20 44641954 44641954 C A MMP9 Missense_Mutation p.P464H 0.19 deleterious(0.01) benign(0.358) TCGA-19-5956-01 20 44675063 44675063 G A SLC12A5 Missense_Mutation p.R615Q 0.43 deleterious(0.01) benign(0.065) TCGA-19-5956-01 20 44803550 44803550 G A CDH22 Silent p.F694F 0.40 TCGA-19-5956-01 20 44815547 44815547 C T CDH22 Missense_Mutation p.R488Q 0.46 tolerated(0.41) benign(0.009) TCGA-19-5956-01 20 45000503 45000503 G A ELMO2 Silent p.L508L 0.31 TCGA-19-5956-01 20 45130122 45130122 C T ZNF334 Missense_Mutation p.R619K 0.20 tolerated(0.56) benign(0.004) TCGA-19-5956-01 20 45130788 45130788 C A ZNF334 Missense_Mutation p.R397I 0.16 deleterious(0.04) probably_damaging(0.991) TCGA-19-5956-01 20 45217830 45217830 G A SLC13A3 Missense_Mutation p.R329W 0.18 deleterious(0.05) possibly_damaging(0.773) TCGA-19-5956-01 20 45630079 45630079 C T EYA2 Missense_Mutation p.S41L 0.09 deleterious_low_confidence(0) benign(0.01) TCGA-19-5956-01 20 45839319 45839319 C T ZMYND8 3'Flank 0.23 TCGA-19-5956-01 20 45856011 45856011 C A ZMYND8 Missense_Mutation p.R938M 0.11 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 20 469330 469330 G T CSNK2A1 Silent p.I272I 0.12 TCGA-19-5956-01 20 47248824 47248824 C T PREX1 Missense_Mutation p.R1506H 0.09 deleterious(0.02) possibly_damaging(0.902) TCGA-19-5956-01 20 47317300 47317300 C T PREX1 Missense_Mutation p.R303Q 0.17 deleterious(0) probably_damaging(0.917) TCGA-19-5956-01 20 47639675 47639675 C T ARFGEF2 Missense_Mutation p.A1571V 0.20 deleterious(0.05) benign(0.425) TCGA-19-5956-01 20 47711268 47711268 G T CSE1L Splice_Site p.X865_splice 0.27 TCGA-19-5956-01 20 478425 478425 C A CSNK2A1 Splice_Site p.X123_splice 0.18 TCGA-19-5956-01 20 47858724 47858724 G T DDX27 Missense_Mutation p.E730D 0.48 tolerated(1) benign(0.001) TCGA-19-5956-01 20 47887258 47887258 C A ZNFX1 Missense_Mutation p.S364I 0.13 deleterious(0) possibly_damaging(0.677) TCGA-19-5956-01 20 48604417 48604417 C T SNAI1 Missense_Mutation p.P207S 0.20 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 20 4883156 4883156 G A SLC23A2 Nonsense_Mutation p.R86* 0.20 TCGA-19-5956-01 20 49574908 49574908 G A DPM1 Silent p.F51F 0.40 TCGA-19-5956-01 20 49621078 49621078 G A KCNG1 Missense_Mutation p.A347V 0.50 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 20 50133366 50133366 C T NFATC2 Missense_Mutation p.R430Q 0.17 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 20 50140016 50140016 G A NFATC2 Missense_Mutation p.S255L 0.42 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 20 50225165 50225165 C A ATP9A Silent p.G879G 0.54 TCGA-19-5956-01 20 50407577 50407577 G T SALL4 Missense_Mutation p.S482Y 0.20 deleterious(0) benign(0.08) TCGA-19-5956-01 20 50408508 50408508 C T SALL4 Missense_Mutation p.A172T 0.46 tolerated(0.28) benign(0.007) TCGA-19-5956-01 20 50408677 50408677 G T SALL4 Missense_Mutation p.F115L 0.24 tolerated(0.06) benign(0.015) TCGA-19-5956-01 20 51871010 51871010 G T TSHZ2 Missense_Mutation p.G338V 0.44 tolerated(0.07) probably_damaging(1) TCGA-19-5956-01 20 51871232 51871232 C T TSHZ2 Missense_Mutation p.A412V 0.49 tolerated(0.12) probably_damaging(0.999) TCGA-19-5956-01 20 51871753 51871753 C T TSHZ2 Missense_Mutation p.P586S 0.43 tolerated(0.14) benign(0.063) TCGA-19-5956-01 20 51871890 51871890 C T TSHZ2 Silent p.G631G 0.18 TCGA-19-5956-01 20 52193597 52193597 C A ZNF217 Missense_Mutation p.G569V 0.21 deleterious(0.01) probably_damaging(0.973) TCGA-19-5956-01 20 53208205 53208205 G A DOK5 Missense_Mutation p.E154K 0.45 deleterious(0.01) possibly_damaging(0.645) TCGA-19-5956-01 20 54824271 54824271 C A MC3R Silent p.I124I 0.10 TCGA-19-5956-01 20 54824399 54824399 C A MC3R Missense_Mutation p.A167D 0.49 deleterious(0.02) benign(0.392) TCGA-19-5956-01 20 54945562 54945562 C A AURKA Missense_Mutation p.E336D 0.21 tolerated(0.18) benign(0.064) TCGA-19-5956-01 20 54961465 54961465 C T AURKA Missense_Mutation p.R56H 0.09 deleterious(0.01) possibly_damaging(0.862) TCGA-19-5956-01 20 54974201 54974201 A G CSTF1 Missense_Mutation p.N275S 0.22 tolerated(0.08) possibly_damaging(0.767) TCGA-19-5956-01 20 55027120 55027120 C T CASS4 Silent p.N296N 0.51 TCGA-19-5956-01 20 5559034 5559034 A C GPCPD1 Missense_Mutation p.F233V 0.23 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 20 5564969 5564969 C A GPCPD1 Splice_Site p.X103_splice 0.24 TCGA-19-5956-01 20 56093691 56093691 A C CTCFL Intron 0.09 TCGA-19-5956-01 20 56136568 56136568 A G PCK1 Missense_Mutation p.N34S 0.46 tolerated(0.57) benign(0) TCGA-19-5956-01 20 56140587 56140587 G T PCK1 Missense_Mutation p.E532D 0.25 tolerated(0.25) benign(0.072) TCGA-19-5956-01 20 57415690 57415690 C T RP4-806M20.3 5'Flank 0.08 TCGA-19-5956-01 20 57430192 57430192 G A GNAS Silent p.E624E 0.37 TCGA-19-5956-01 20 57478738 57478738 C T GNAS Silent p.A751A 0.06 TCGA-19-5956-01 20 57478739 57478739 G A GNAS Missense_Mutation p.A752T 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 57567031 57567031 C A NELFCD Silent p.A413A 0.29 TCGA-19-5956-01 20 57766653 57766653 G A ZNF831 Silent p.T193T 0.47 TCGA-19-5956-01 20 57767955 57767955 G A ZNF831 Silent p.T627T 0.48 TCGA-19-5956-01 20 57768602 57768602 C T ZNF831 Missense_Mutation p.T843I 0.15 tolerated(0.16) benign(0.003) TCGA-19-5956-01 20 57768859 57768859 C T ZNF831 Missense_Mutation p.L929F 0.47 tolerated(0.17) benign(0.145) TCGA-19-5956-01 20 57829431 57829431 C T ZNF831 Missense_Mutation p.S1556L 0.43 tolerated(0.19) benign(0) TCGA-19-5956-01 20 58439413 58439413 C A SYCP2 Nonsense_Mutation p.E1516* 0.43 TCGA-19-5956-01 20 58519040 58519040 G A FAM217B Silent p.K14K 0.51 TCGA-19-5956-01 20 58519701 58519701 C T FAM217B Silent p.L235L 0.43 TCGA-19-5956-01 20 58564217 58564217 A C CDH26 Silent p.R428R 0.47 TCGA-19-5956-01 20 58571014 58571014 C T CDH26 Missense_Mutation p.A598V 0.26 tolerated(0.08) benign(0.108) TCGA-19-5956-01 20 5904096 5904096 G T CHGB Nonsense_Mutation p.E436* 0.24 TCGA-19-5956-01 20 5921917 5921917 G A TRMT6 Missense_Mutation p.P396L 0.26 deleterious(0) probably_damaging(0.965) TCGA-19-5956-01 20 5953769 5953769 G A MCM8 Missense_Mutation p.R441K 0.25 tolerated(0.73) probably_damaging(0.998) TCGA-19-5956-01 20 6022000 6022000 C T LRRN4 Missense_Mutation p.A631T 0.39 tolerated(0.09) probably_damaging(0.943) TCGA-19-5956-01 20 6031588 6031588 G T LRRN4 Missense_Mutation p.L233I 0.19 deleterious(0.01) possibly_damaging(0.622) TCGA-19-5956-01 20 60427821 60427821 C T CDH4 Silent p.H248H 0.16 TCGA-19-5956-01 20 60578917 60578917 C T TAF4 Silent p.P747P 0.13 TCGA-19-5956-01 20 60697804 60697804 C A LSM14B Missense_Mutation p.L28I 0.21 deleterious(0) benign(0.126) TCGA-19-5956-01 20 60704961 60704961 C T LSM14B Missense_Mutation p.T183M 0.17 tolerated(0.15) benign(0.001) TCGA-19-5956-01 20 60738559 60738559 C T SS18L1 Missense_Mutation p.A201V 0.30 deleterious_low_confidence(0.04) possibly_damaging(0.604) TCGA-19-5956-01 20 60889615 60889615 C T LAMA5 Missense_Mutation p.R2788H 0.39 benign(0.379) TCGA-19-5956-01 20 60966148 60966148 C T CABLES2 Missense_Mutation p.R439Q 0.11 deleterious(0.03) probably_damaging(1) TCGA-19-5956-01 20 60991841 60991841 C A RBBP8NL Missense_Mutation p.Q96H 0.41 deleterious(0.04) benign(0.29) TCGA-19-5956-01 20 61040454 61040454 G A GATA5 Missense_Mutation p.S327L 0.40 tolerated(1) benign(0) TCGA-19-5956-01 20 61143820 61143820 C T C20orf166 5'Flank 0.27 TCGA-19-5956-01 20 61296495 61296495 G T SLCO4A1 Intron 0.27 TCGA-19-5956-01 20 61468560 61468560 C T COL9A3 Nonsense_Mutation p.R577* 0.53 TCGA-19-5956-01 20 61512313 61512313 G A DIDO1 Silent p.C1665C 0.58 TCGA-19-5956-01 20 61598777 61598777 C T SLC17A9 Silent p.N412N 0.09 TCGA-19-5956-01 20 61981792 61981792 G A CHRNA4 Missense_Mutation p.T324M 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 62126236 62126236 G A EEF1A2 Silent p.I181I 0.33 TCGA-19-5956-01 20 62164013 62164013 T G PTK6 Missense_Mutation p.Q233P 0.16 deleterious(0.04) possibly_damaging(0.48) TCGA-19-5956-01 20 62227026 62227026 G A GMEB2 Missense_Mutation p.R186C 0.48 deleterious(0) probably_damaging(0.912) TCGA-19-5956-01 20 62250679 62250679 G A GMEB2 Silent p.D24D 0.26 TCGA-19-5956-01 20 62317217 62317217 G T RTEL1 Missense_Mutation p.R471I 0.12 deleterious(0.03) benign(0.275) TCGA-19-5956-01 20 62329703 62329703 G T TNFRSF6B Missense_Mutation p.Q230H 0.28 tolerated(0.08) possibly_damaging(0.525) TCGA-19-5956-01 20 62421377 62421377 G T ZBTB46 Missense_Mutation p.S245Y 0.18 deleterious(0.04) benign(0.418) TCGA-19-5956-01 20 62551363 62551363 G A DNAJC5 Intron 0.65 TCGA-19-5956-01 20 62701550 62701550 G A TCEA2 Intron 0.29 TCGA-19-5956-01 20 62729297 62729297 G T OPRL1 Missense_Mutation p.V126F 0.09 tolerated(0.06) probably_damaging(0.917) TCGA-19-5956-01 20 62836938 62836938 A C MYT1 Missense_Mutation p.K61T 0.32 benign(0) TCGA-19-5956-01 20 644685 644685 G A SCRT2 Missense_Mutation p.A185V 0.47 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 20 7866187 7866187 C T HAO1 Silent p.R341R 0.11 TCGA-19-5956-01 20 7920979 7920979 C A HAO1 Missense_Mutation p.A31S 0.30 deleterious(0.03) probably_damaging(0.98) TCGA-19-5956-01 20 9368189 9368189 G T PLCB4 Missense_Mutation p.D382Y 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 20 9389279 9389279 G T PLCB4 Splice_Site p.X585_splice 0.12 TCGA-19-5956-01 20 9519961 9519961 G A PAK7 3'UTR 0.22 TCGA-19-5956-01 20 9546618 9546618 C A PAK7 Missense_Mutation p.E468D 0.27 tolerated(0.31) probably_damaging(0.979) TCGA-19-5956-01 20 9546891 9546891 G A PAK7 Silent p.Y377Y 0.11 TCGA-19-5956-01 21 10971336 10971336 C T TPTE Silent p.P7P 0.16 TCGA-19-5956-01 21 11014986 11014986 C T TPTE RNA 0.41 TCGA-19-5956-01 21 11029689 11029689 C A BAGE2 RNA 0.14 TCGA-19-5956-01 21 15561453 15561453 C A LIPI Missense_Mutation p.D133Y 0.14 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 21 15599598 15599598 A C RBM11 Missense_Mutation p.K277T 0.28 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 21 15746565 15746565 C T HSPA13 Silent p.L263L 0.41 TCGA-19-5956-01 21 16340500 16340500 T C NRIP1 Missense_Mutation p.E5G 0.11 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 21 18981351 18981351 G T BTG3 Missense_Mutation p.L38I 0.21 deleterious(0) probably_damaging(0.956) TCGA-19-5956-01 21 19165714 19165714 G A C21orf91 3'UTR 0.43 TCGA-19-5956-01 21 19685353 19685353 G A TMPRSS15 Missense_Mutation p.R692W 0.22 deleterious(0.02) benign(0.139) TCGA-19-5956-01 21 19744528 19744528 C T TMPRSS15 Missense_Mutation p.E216K 0.24 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 21 22656632 22656632 A G NCAM2 Silent p.A83A 0.07 TCGA-19-5956-01 21 26972113 26972113 T G MRPL39 Missense_Mutation p.K196Q 0.36 tolerated(0.4) benign(0.036) TCGA-19-5956-01 21 26976239 26976239 C T MRPL39 Missense_Mutation p.E97K 0.45 deleterious(0.03) benign(0.21) TCGA-19-5956-01 21 27074551 27074551 C T JAM2 Missense_Mutation p.R223C 0.23 deleterious(0) possibly_damaging(0.84) TCGA-19-5956-01 21 27253928 27253928 G A APP 3'UTR 0.12 TCGA-19-5956-01 21 27840894 27840894 G A CYYR1 Missense_Mutation p.P131S 0.08 deleterious(0.01) probably_damaging(0.995) TCGA-19-5956-01 21 28217346 28217346 G T ADAMTS1 5'UTR 0.65 TCGA-19-5956-01 21 28337640 28337640 C A ADAMTS5 Missense_Mutation p.E357D 0.40 tolerated(0.06) benign(0.093) TCGA-19-5956-01 21 30308894 30308894 C A LTN1 Missense_Mutation p.K1582N 0.50 deleterious(0) possibly_damaging(0.647) TCGA-19-5956-01 21 30324491 30324491 C A LTN1 Missense_Mutation p.R1158I 0.31 tolerated(0.12) benign(0.076) TCGA-19-5956-01 21 30699046 30699046 A C BACH1 Missense_Mutation p.T301P 0.14 tolerated(0.24) benign(0.001) TCGA-19-5956-01 21 30701987 30701987 G T BACH1 Missense_Mutation p.Q583H 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 21 30959871 30959871 G A GRIK1 Silent p.Y536Y 0.18 TCGA-19-5956-01 21 31311765 31311765 G A GRIK1 Silent p.S18S 0.22 TCGA-19-5956-01 21 31311893 31311893 G A GRIK1 5'UTR 0.42 TCGA-19-5956-01 21 31588019 31588019 C T CLDN8 Silent p.P75P 0.08 TCGA-19-5956-01 21 31654918 31654918 G A KRTAP24-1 Silent p.N111N 0.51 TCGA-19-5956-01 21 32639190 32639190 C T TIAM1 Silent p.S33S 0.33 TCGA-19-5956-01 21 33067257 33067257 C A SCAF4 Nonsense_Mutation p.G369* 0.15 TCGA-19-5956-01 21 33296873 33296873 C T HUNK Missense_Mutation p.R119C 0.09 deleterious(0) probably_damaging(1) TCGA-19-5956-01 21 33840023 33840023 C T EVA1C Silent p.T167T 0.21 TCGA-19-5956-01 21 34029327 34029327 C A SYNJ1 Missense_Mutation p.K894N 0.09 deleterious(0) probably_damaging(1) TCGA-19-5956-01 21 34038374 34038374 C A SYNJ1 Missense_Mutation p.R714L 0.39 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 21 34058197 34058197 C T SYNJ1 Missense_Mutation p.D366N 0.44 deleterious(0.02) benign(0.13) TCGA-19-5956-01 21 34715603 34715603 G T IFNAR1 Nonsense_Mutation p.E136* 0.24 TCGA-19-5956-01 21 34727859 34727859 G T IFNAR1 3'UTR 0.41 TCGA-19-5956-01 21 34903815 34903815 G T GART Missense_Mutation p.L193I 0.43 deleterious(0.05) probably_damaging(0.995) TCGA-19-5956-01 21 34926110 34926110 G A SON Missense_Mutation p.E1525K 0.11 benign(0.305) TCGA-19-5956-01 21 34926126 34926126 T C SON Missense_Mutation p.I1530T 0.28 benign(0.152) TCGA-19-5956-01 21 34927084 34927084 G T SON Missense_Mutation p.K1849N 0.12 unknown(0) TCGA-19-5956-01 21 35166729 35166729 C T ITSN1 Nonsense_Mutation p.R637* 0.40 TCGA-19-5956-01 21 35229123 35229123 G A ITSN1 Missense_Mutation p.E1249K 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 21 35237524 35237524 C T ITSN1 Silent p.S1320S 0.13 TCGA-19-5956-01 21 35468141 35468141 G T SLC5A3 Missense_Mutation p.R215I 0.21 deleterious(0.04) benign(0.01) TCGA-19-5956-01 21 35468701 35468701 G A SLC5A3 Missense_Mutation p.A402T 0.26 deleterious(0.02) possibly_damaging(0.746) TCGA-19-5956-01 21 35821462 35821462 A C KCNE1 3'UTR 0.25 TCGA-19-5956-01 21 35821593 35821593 C T KCNE1 Missense_Mutation p.A114T 0.19 tolerated(0.06) benign(0.43) TCGA-19-5956-01 21 35893883 35893883 G T RCAN1 Missense_Mutation p.S167Y 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 21 36079687 36079687 G T CLIC6 Missense_Mutation p.R495M 0.19 deleterious(0) probably_damaging(0.97) TCGA-19-5956-01 21 36171666 36171666 G A RUNX1 Missense_Mutation p.T300M 0.20 deleterious(0) probably_damaging(0.931) TCGA-19-5956-01 21 37420646 37420646 C A SETD4 Missense_Mutation p.D86Y 0.21 deleterious(0.01) probably_damaging(0.951) TCGA-19-5956-01 21 37443313 37443313 C T CBR1 Nonsense_Mutation p.R119* 0.46 TCGA-19-5956-01 21 37603225 37603225 C T DOPEY2 Missense_Mutation p.P715S 0.43 tolerated(0.78) benign(0.005) TCGA-19-5956-01 21 37742017 37742017 A G MORC3 Missense_Mutation p.K784R 0.43 tolerated(0.15) possibly_damaging(0.493) TCGA-19-5956-01 21 37833677 37833677 C T CLDN14 Missense_Mutation p.R106H 0.20 tolerated(0.22) benign(0.007) TCGA-19-5956-01 21 38537968 38537968 G A TTC3 Missense_Mutation p.G1151D 0.05 deleterious(0.01) probably_damaging(0.971) TCGA-19-5956-01 21 38555197 38555197 T G TTC3 Missense_Mutation p.V1580G 0.32 tolerated(0.33) benign(0.375) TCGA-19-5956-01 21 39087418 39087418 G A KCNJ6 Silent p.G14G 0.20 TCGA-19-5956-01 21 39671642 39671642 G T KCNJ15 Silent p.T153T 0.15 TCGA-19-5956-01 21 39672346 39672346 C T KCNJ15 3'UTR 0.41 TCGA-19-5956-01 21 39762937 39762937 C A ERG Missense_Mutation p.S307I 0.46 deleterious(0) possibly_damaging(0.862) TCGA-19-5956-01 21 40549437 40549437 A G PSMG1 Missense_Mutation p.V239A 0.18 deleterious(0.02) possibly_damaging(0.482) TCGA-19-5956-01 21 40571323 40571324 - T BRWD1 Frame_Shift_Ins p.L1674Vfs*4 0.20 TCGA-19-5956-01 21 40581970 40581970 C T BRWD1 Missense_Mutation p.R1383Q 0.55 deleterious(0.01) probably_damaging(0.99) TCGA-19-5956-01 21 40590152 40590152 C T BRWD1 Silent p.P1195P 0.22 TCGA-19-5956-01 21 41427756 41427756 C T DSCAM Missense_Mutation p.R1644Q 0.17 tolerated(0.18) possibly_damaging(0.82) TCGA-19-5956-01 21 41447003 41447003 G A DSCAM Missense_Mutation p.R1617W 0.38 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 21 41505803 41505803 G A DSCAM Silent p.I1180I 0.11 TCGA-19-5956-01 21 41559169 41559169 C T DSCAM Missense_Mutation p.E890K 0.42 tolerated(0.08) benign(0.146) TCGA-19-5956-01 21 41741040 41741040 C A DSCAM Missense_Mutation p.R214I 0.15 deleterious(0.04) probably_damaging(0.993) TCGA-19-5956-01 21 42609596 42609596 C A BACE2 Missense_Mutation p.F186L 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 21 42647490 42647490 G A BACE2 Missense_Mutation p.R499H 0.22 tolerated(0.22) benign(0.002) TCGA-19-5956-01 21 42762501 42762501 C A MX2 Missense_Mutation p.L248I 0.50 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 21 43221544 43221544 C T PRDM15 Silent p.Q1460Q 0.33 TCGA-19-5956-01 21 43342156 43342156 G T C2CD2 Missense_Mutation p.F139L 0.11 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 21 43413983 43413983 G T ZBTB21 Missense_Mutation p.F74L 0.25 deleterious(0.05) probably_damaging(0.994) TCGA-19-5956-01 21 43543048 43543048 C T UMODL1 Silent p.L1107L 0.22 TCGA-19-5956-01 21 43716274 43716274 G A ABCG1 Silent p.R603R 0.60 TCGA-19-5956-01 21 43732334 43732334 G A TFF3 3'UTR 0.45 TCGA-19-5956-01 21 43846858 43846858 G T UBASH3A Missense_Mutation p.A367S 0.26 tolerated(0.52) benign(0.15) TCGA-19-5956-01 21 44108093 44108093 G A PDE9A Silent p.A69A 0.18 TCGA-19-5956-01 21 44117590 44117590 C T PDE9A Intron 0.38 TCGA-19-5956-01 21 45548259 45548259 G A PWP2 Missense_Mutation p.G831R 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 21 45710739 45710739 G T AIRE Intron 0.12 TCGA-19-5956-01 21 45739985 45739985 G A PFKL Nonsense_Mutation p.W382* 0.22 TCGA-19-5956-01 21 45752971 45752971 G T C21orf2 Silent p.R106R 0.24 TCGA-19-5956-01 21 45819291 45819291 G T TRPM2 Missense_Mutation p.K725N 0.47 tolerated(0.37) possibly_damaging(0.721) TCGA-19-5956-01 21 45861589 45861589 C T TRPM2 Silent p.C1467C 0.36 TCGA-19-5956-01 21 45994251 45994251 C A KRTAP10-4 Missense_Mutation p.P206T 0.09 deleterious(0.01) unknown(0) TCGA-19-5956-01 21 45999937 45999937 G A KRTAP10-5 Silent p.Y173Y 0.52 TCGA-19-5956-01 21 46020854 46020854 G A KRTAP10-7 Silent p.Q111Q 0.08 TCGA-19-5956-01 21 46271410 46271410 C T PTTG1IP 3'UTR 0.44 TCGA-19-5956-01 21 46321560 46321560 T G ITGB2 Missense_Mutation p.K196N 0.28 tolerated(0.21) benign(0.441) TCGA-19-5956-01 21 46687447 46687447 G A POFUT2 Intron 0.10 TCGA-19-5956-01 21 47412098 47412099 - C COL6A1 Frame_Shift_Ins p.G404Rfs*15 0.09 TCGA-19-5956-01 21 47532360 47532360 A C COL6A2 Missense_Mutation p.N195H 0.32 deleterious(0.02) benign(0.343) TCGA-19-5956-01 21 47664897 47664897 G T MCM3AP Missense_Mutation p.S1621Y 0.22 deleterious(0.02) possibly_damaging(0.642) TCGA-19-5956-01 21 47678936 47678936 C A MCM3AP Silent p.V1217V 0.45 TCGA-19-5956-01 21 47684124 47684124 G A MCM3AP Missense_Mutation p.A1081V 0.22 tolerated(0.6) benign(0.001) TCGA-19-5956-01 21 47783829 47783829 G A PCNT Silent p.Q863Q 0.46 TCGA-19-5956-01 21 47817956 47817956 G A PCNT Missense_Mutation p.R1492H 0.20 possibly_damaging(0.84) TCGA-19-5956-01 21 48083387 48083387 G T PRMT2 Missense_Mutation p.R397I 0.44 deleterious(0) probably_damaging(0.951) TCGA-19-5956-01 22 17073437 17073437 C A CCT8L2 Missense_Mutation p.D2Y 0.41 deleterious(0.03) benign(0.36) TCGA-19-5956-01 22 18209707 18209707 T G BCL2L13 Missense_Mutation p.L289V 0.28 deleterious(0.04) probably_damaging(0.996) TCGA-19-5956-01 22 18226624 18226624 C T BID Silent p.E102E 0.47 TCGA-19-5956-01 22 19119252 19119252 C T TSSK2 Missense_Mutation p.R114C 0.16 tolerated(0.07) benign(0.173) TCGA-19-5956-01 22 19338957 19338957 C T HIRA Missense_Mutation p.R954Q 0.11 deleterious(0.01) possibly_damaging(0.841) TCGA-19-5956-01 22 21348864 21348864 C A LZTR1 Missense_Mutation p.L545M 0.20 tolerated(0.06) probably_damaging(0.994) TCGA-19-5956-01 22 21800868 21800868 G A HIC2 Missense_Mutation p.A562T 0.57 deleterious(0.01) probably_damaging(0.948) TCGA-19-5956-01 22 22049230 22049230 C T PPIL2 Missense_Mutation p.A446V 0.86 tolerated(0.07) benign(0.18) TCGA-19-5956-01 22 22661259 22661259 G A BMS1P20 RNA 0.70 TCGA-19-5956-01 22 22677297 22677297 G A IGLV1-51 Missense_Mutation p.G109R 0.85 tolerated(0.35) benign(0.314) TCGA-19-5956-01 22 22682041 22682041 C T IGLV1-50 Missense_Mutation p.R75W 0.42 deleterious_low_confidence(0) benign(0.423) TCGA-19-5956-01 22 22931074 22931074 A C IGLV2-33 Missense_Mutation p.N90T 0.08 tolerated_low_confidence(0.2) benign(0.237) TCGA-19-5956-01 22 23437935 23437935 G T GNAZ Missense_Mutation p.R18I 0.33 tolerated(0.06) probably_damaging(0.928) TCGA-19-5956-01 22 23503166 23503166 C T RAB36 Silent p.V306V 0.96 TCGA-19-5956-01 22 23974205 23974205 C T C22orf43 Silent p.G2G 0.41 TCGA-19-5956-01 22 24225988 24225988 C T SLC2A11 Silent p.R345R 0.89 TCGA-19-5956-01 22 24472225 24472225 C T CABIN1 Nonsense_Mutation p.R914* 0.39 TCGA-19-5956-01 22 24730430 24730430 G A SPECC1L Missense_Mutation p.D817N 0.53 deleterious(0.03) probably_damaging(0.998) TCGA-19-5956-01 22 24808659 24808659 G A SPECC1L Missense_Mutation p.G1083D 0.86 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 22 24829576 24829576 C T ADORA2A Silent p.T68T 0.49 TCGA-19-5956-01 22 24837359 24837359 C A ADORA2A Missense_Mutation p.P381T 0.93 deleterious_low_confidence(0.02) benign(0.031) TCGA-19-5956-01 22 25251280 25251280 G A SGSM1 Silent p.K184K 0.87 TCGA-19-5956-01 22 26086168 26086168 C A ADRBK2 Missense_Mutation p.L324I 0.24 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 22 26860201 26860201 G A HPS4 Silent p.T465T 0.90 TCGA-19-5956-01 22 28307086 28307086 C T PITPNB Silent p.G21G 0.40 TCGA-19-5956-01 22 29193112 29193112 G A XBP1 Missense_Mutation p.R136C 0.25 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 22 29445816 29445816 C T ZNRF3 Silent p.S549S 0.88 TCGA-19-5956-01 22 29695701 29695701 T C EWSR1 Silent p.G602G 1.00 TCGA-19-5956-01 22 29745299 29745299 T G AP1B1 Missense_Mutation p.I449L 0.29 deleterious(0) possibly_damaging(0.718) TCGA-19-5956-01 22 31284257 31284257 A G OSBP2 Missense_Mutation p.T450A 0.12 tolerated(0.15) benign(0.02) TCGA-19-5956-01 22 31534323 31534323 C A PLA2G3 Nonsense_Mutation p.E241* 0.88 TCGA-19-5956-01 22 31534339 31534339 G T PLA2G3 Silent p.A235A 0.38 TCGA-19-5956-01 22 32495249 32495249 G T SLC5A1 Missense_Mutation p.D454Y 0.09 deleterious(0.03) possibly_damaging(0.708) TCGA-19-5956-01 22 32506085 32506085 C T SLC5A1 Missense_Mutation p.A627V 0.17 tolerated(0.19) benign(0.097) TCGA-19-5956-01 22 33960968 33960968 C T LARGE Missense_Mutation p.G218E 0.87 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 22 35779174 35779174 C A HMOX1 Missense_Mutation p.F33L 0.46 tolerated(0.35) possibly_damaging(0.522) TCGA-19-5956-01 22 36177713 36177713 C T RBFOX2 Silent p.P181P 0.39 TCGA-19-5956-01 22 36690983 36690983 T C MYH9 Missense_Mutation p.K1209E 0.06 possibly_damaging(0.734) TCGA-19-5956-01 22 36892129 36892129 G T FOXRED2 Missense_Mutation p.F503L 0.22 deleterious(0.01) possibly_damaging(0.721) TCGA-19-5956-01 22 36960735 36960735 G T CACNG2 Missense_Mutation p.A212D 0.49 deleterious(0.03) possibly_damaging(0.502) TCGA-19-5956-01 22 37769729 37769729 G A ELFN2 Missense_Mutation p.R616C 0.30 deleterious(0) probably_damaging(1) TCGA-19-5956-01 22 38016887 38016887 G T GGA1 Missense_Mutation p.K165N 0.26 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 22 38038871 38038871 C T SH3BP1 Intron 0.38 TCGA-19-5956-01 22 38122157 38122157 C T TRIOBP Silent p.S1198S 0.84 TCGA-19-5956-01 22 38471012 38471012 A G PICK1 Missense_Mutation p.N374S 0.19 tolerated(0.98) benign(0) TCGA-19-5956-01 22 38508210 38508210 G A PLA2G6 Silent p.R793R 0.21 TCGA-19-5956-01 22 38897252 38897252 C T DDX17 Silent p.P107P 0.38 TCGA-19-5956-01 22 39145782 39145782 G A SUN2 Silent p.F222F 0.42 TCGA-19-5956-01 22 39482298 39482298 C T APOBEC3G Silent p.H250H 0.36 TCGA-19-5956-01 22 39709294 39709294 G A RPL3 Missense_Mutation p.R357W 0.86 tolerated(0.09) benign(0.004) TCGA-19-5956-01 22 39884745 39884745 T C MGAT3 Missense_Mutation p.F465L 0.94 deleterious(0) possibly_damaging(0.549) TCGA-19-5956-01 22 40062008 40062008 C T CACNA1I Silent p.G1367G 0.85 TCGA-19-5956-01 22 40521784 40521784 T G TNRC6B 5'UTR 1.00 TCGA-19-5956-01 22 40661483 40661483 C T TNRC6B Nonsense_Mutation p.R417* 0.89 TCGA-19-5956-01 22 41195051 41195051 C T SLC25A17 Missense_Mutation p.D31N 0.79 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 22 41244370 41244370 C A ST13 Nonsense_Mutation p.E58* 0.16 TCGA-19-5956-01 22 41257890 41257890 C A DNAJB7 Nonsense_Mutation p.E37* 0.09 TCGA-19-5956-01 22 41536214 41536214 T C EP300 Missense_Mutation p.Y611H 0.40 unknown(0) TCGA-19-5956-01 22 41547910 41547910 C A EP300 Missense_Mutation p.S964Y 0.19 probably_damaging(0.947) TCGA-19-5956-01 22 41791798 41791798 G T TEF Missense_Mutation p.R249L 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 22 41997174 41997174 C T DESI1 Missense_Mutation p.R145Q 0.29 tolerated(0.17) benign(0.03) TCGA-19-5956-01 22 42141950 42141950 G A MEI1 Missense_Mutation p.A534T 0.32 tolerated(0.25) benign(0.017) TCGA-19-5956-01 22 42195364 42195364 A C MEI1 3'UTR 0.81 TCGA-19-5956-01 22 42269905 42269905 A G SREBF2 Missense_Mutation p.E324G 0.53 tolerated(0.67) benign(0.001) TCGA-19-5956-01 22 42294733 42294733 C T SREBF2 Missense_Mutation p.R896C 0.94 deleterious(0) benign(0.035) TCGA-19-5956-01 22 42537242 42537242 G A NDUFA6-AS1 3'Flank 0.84 TCGA-19-5956-01 22 43950795 43950795 A T EFCAB6 Missense_Mutation p.F1201Y 0.17 deleterious(0.01) probably_damaging(0.976) TCGA-19-5956-01 22 44112761 44112761 G T EFCAB6 Silent p.S283S 0.84 TCGA-19-5956-01 22 44395515 44395515 G T PARVB Missense_Mutation p.R58I 0.95 deleterious_low_confidence(0.01) benign(0.009) TCGA-19-5956-01 22 45241170 45241170 C T ARHGAP8 Silent p.G328G 0.33 TCGA-19-5956-01 22 45750938 45750938 C T SMC1B Missense_Mutation p.A1007T 0.93 tolerated(0.36) benign(0.012) TCGA-19-5956-01 22 46657220 46657220 G A PKDREJ Missense_Mutation p.A667V 0.90 tolerated(1) benign(0.007) TCGA-19-5956-01 22 46704837 46704837 G T GTSE1 Missense_Mutation p.E253D 0.76 deleterious(0.01) possibly_damaging(0.844) TCGA-19-5956-01 22 46795644 46795644 G T CELSR1 Silent p.V1794V 0.32 TCGA-19-5956-01 22 47069699 47069699 C T GRAMD4 Missense_Mutation p.R458C 0.31 tolerated(0.19) probably_damaging(0.988) TCGA-19-5956-01 22 50304222 50304222 C A ALG12 Missense_Mutation p.G110V 0.42 possibly_damaging(0.686) TCGA-19-5956-01 22 50487728 50487728 C A TTLL8 Nonsense_Mutation p.E108* 0.43 TCGA-19-5956-01 22 50942860 50942860 G T LMF2 Missense_Mutation p.Q543K 0.15 deleterious(0.01) benign(0.103) TCGA-19-5956-01 22 51011478 51011478 G A CPT1B Missense_Mutation p.A393V 0.90 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 22 51012085 51012085 A C CPT1B Missense_Mutation p.F344V 0.83 deleterious(0.01) benign(0.428) TCGA-19-5956-01 2 100029371 100029371 A T REV1 Missense_Mutation p.I665N 0.12 deleterious(0) possibly_damaging(0.883) TCGA-19-5956-01 2 100055086 100055086 G T REV1 Missense_Mutation p.S397Y 0.24 deleterious(0) possibly_damaging(0.781) TCGA-19-5956-01 2 100182039 100182039 G A AFF3 Missense_Mutation p.S1035L 0.60 deleterious(0) benign(0.256) TCGA-19-5956-01 2 100199424 100199424 G A AFF3 Missense_Mutation p.R902W 0.13 deleterious(0.03) benign(0.055) TCGA-19-5956-01 2 100911927 100911927 C A LONRF2 Missense_Mutation p.R522I 0.61 deleterious(0) possibly_damaging(0.797) TCGA-19-5956-01 2 101009776 101009776 G A CHST10 Silent p.R334R 0.30 TCGA-19-5956-01 2 101012018 101012018 G A CHST10 Silent p.N162N 0.38 TCGA-19-5956-01 2 101192982 101192982 G A PDCL3 3'UTR 0.42 TCGA-19-5956-01 2 101541647 101541647 G T NPAS2 Missense_Mutation p.Q24H 0.25 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 101565908 101565908 A G NPAS2 Missense_Mutation p.I188M 0.38 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 101666942 101666942 C T TBC1D8 Missense_Mutation p.V250M 0.50 tolerated(0.12) benign(0.149) TCGA-19-5956-01 2 101670707 101670707 C A TBC1D8 Missense_Mutation p.R150M 0.65 tolerated(0.11) probably_damaging(0.992) TCGA-19-5956-01 2 10187812 10187812 G T KLF11 Missense_Mutation p.E116D 0.08 deleterious(0.02) benign(0.079) TCGA-19-5956-01 2 101881381 101881381 C T CNOT11 Missense_Mutation p.P303S 0.11 deleterious(0.01) possibly_damaging(0.601) TCGA-19-5956-01 2 101924648 101924648 C T RNF149 Missense_Mutation p.V135I 0.22 deleterious(0.01) probably_damaging(0.919) TCGA-19-5956-01 2 101924651 101924651 C T RNF149 Missense_Mutation p.A134T 0.19 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 2 101924901 101924901 C T RNF149 Silent p.Q50Q 0.33 TCGA-19-5956-01 2 10269068 10269068 C T RRM2 Missense_Mutation p.R358W 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.676) TCGA-19-5956-01 2 102968487 102968487 A C IL1RL1 3'UTR 0.60 TCGA-19-5956-01 2 102988437 102988437 A G IL18R1 Silent p.L109L 0.55 TCGA-19-5956-01 2 103001421 103001421 G A IL18R1 Missense_Mutation p.D258N 0.26 tolerated(0.07) benign(0.063) TCGA-19-5956-01 2 103039792 103039792 G T IL18RAP Nonsense_Mutation p.G19* 0.59 TCGA-19-5956-01 2 103321079 103321079 G A SLC9A2 Missense_Mutation p.R641Q 0.64 tolerated(1) probably_damaging(0.996) TCGA-19-5956-01 2 103334923 103334923 G A MFSD9 Nonsense_Mutation p.R461* 0.31 TCGA-19-5956-01 2 103347489 103347489 A C MFSD9 Missense_Mutation p.L98V 0.24 tolerated(0.38) benign(0.015) TCGA-19-5956-01 2 105696461 105696461 G T MRPS9 Missense_Mutation p.G144C 0.16 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 2 10580891 10580891 G A ODC1 Missense_Mutation p.R449C 0.22 tolerated_low_confidence(0.18) benign(0.001) TCGA-19-5956-01 2 105885875 105885875 G A TGFBRAP1 Silent p.L754L 0.30 TCGA-19-5956-01 2 106498400 106498400 G A NCK2 Silent p.A281A 0.08 TCGA-19-5956-01 2 107021669 107021669 A T RGPD3 3'UTR 0.09 TCGA-19-5956-01 2 107040918 107040918 G A RGPD3 Missense_Mutation p.R1169W 0.28 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 2 107423007 107423007 G T ST6GAL2 3'UTR 0.31 TCGA-19-5956-01 2 108477308 108477308 G T RGPD4 Missense_Mutation p.K615N 0.14 deleterious(0) possibly_damaging(0.788) TCGA-19-5956-01 2 108881283 108881283 C A SULT1C3 Missense_Mutation p.D208E 0.19 deleterious(0.01) benign(0.357) TCGA-19-5956-01 2 108924921 108924921 G A SULT1C2 3'UTR 0.19 TCGA-19-5956-01 2 10908853 10908853 G A ATP6V1C2 Silent p.A129A 0.12 TCGA-19-5956-01 2 109383828 109383828 C A RANBP2 Missense_Mutation p.S2278Y 0.26 deleterious(0.01) probably_damaging(0.994) TCGA-19-5956-01 2 109964358 109964358 G A SH3RF3 Missense_Mutation p.E268K 0.28 deleterious(0) probably_damaging(0.938) TCGA-19-5956-01 2 110881398 110881398 G T NPHP1 Missense_Mutation p.F724L 0.34 tolerated(0.28) benign(0.113) TCGA-19-5956-01 2 110927421 110927421 C A NPHP1 Missense_Mutation p.D162Y 0.25 deleterious(0) probably_damaging(0.914) TCGA-19-5956-01 2 111399706 111399706 A C BUB1 Missense_Mutation p.F818C 0.31 tolerated(0.14) benign(0.058) TCGA-19-5956-01 2 111416241 111416241 G A BUB1 Missense_Mutation p.T452M 0.33 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 111921737 111921737 G A BCL2L11 Missense_Mutation p.E176K 0.62 tolerated(0.69) benign(0.079) TCGA-19-5956-01 2 112786356 112786356 C T MERTK Missense_Mutation p.S972L 0.40 deleterious_low_confidence(0.04) benign(0.002) TCGA-19-5956-01 2 112944821 112944821 C T FBLN7 Missense_Mutation p.T353M 0.30 deleterious(0.03) probably_damaging(0.953) TCGA-19-5956-01 2 113012555 113012555 C T ZC3H8 Missense_Mutation p.D2N 0.50 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-19-5956-01 2 113079365 113079365 G A ZC3H6 Missense_Mutation p.A337T 0.25 tolerated(0.06) probably_damaging(0.998) TCGA-19-5956-01 2 113148568 113148568 T C RGPD8 Missense_Mutation p.N894S 0.23 deleterious(0.04) benign(0.292) TCGA-19-5956-01 2 113304706 113304706 T C POLR1B Missense_Mutation p.Y99H 0.37 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 2 113332776 113332776 G T POLR1B Nonsense_Mutation p.E960* 0.11 TCGA-19-5956-01 2 113510025 113510025 G T CKAP2L Missense_Mutation p.S474Y 0.23 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 113514429 113514429 G A CKAP2L Silent p.N173N 0.23 TCGA-19-5956-01 2 113671395 113671395 G A IL37 Missense_Mutation p.G37S 0.10 tolerated(0.12) benign(0.188) TCGA-19-5956-01 2 113819758 113819758 T C IL36RN Missense_Mutation p.I58T 0.48 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 2 113820076 113820076 G A IL36RN Missense_Mutation p.S97N 0.13 tolerated(0.16) benign(0.002) TCGA-19-5956-01 2 113890332 113890332 G A IL1RN Missense_Mutation p.A143T 0.33 deleterious(0.02) probably_damaging(0.977) TCGA-19-5956-01 2 113955414 113955414 G A PSD4 Missense_Mutation p.A850T 0.09 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 113993053 113993053 G A PAX8 Silent p.V335V 0.65 TCGA-19-5956-01 2 114004430 114004430 C T PAX8 Missense_Mutation p.R31H 0.66 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 114492187 114492187 G T SLC35F5 Missense_Mutation p.S299Y 0.56 deleterious(0) possibly_damaging(0.845) TCGA-19-5956-01 2 114500296 114500296 C T SLC35F5 Silent p.A241A 0.60 TCGA-19-5956-01 2 114508043 114508043 G A SLC35F5 Nonsense_Mutation p.Q126* 0.10 TCGA-19-5956-01 2 116594107 116594107 T G DPP10 Missense_Mutation p.L696R 0.73 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 2 11772147 11772147 T C GREB1 Missense_Mutation p.V1575A 0.17 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 2 11935593 11935593 G A LPIN1 Silent p.P671P 0.19 TCGA-19-5956-01 2 119732103 119732103 C T MARCO Missense_Mutation p.S192L 0.28 tolerated(0.06) benign(0.007) TCGA-19-5956-01 2 119988471 119988471 A G STEAP3 5'UTR 0.23 TCGA-19-5956-01 2 120003521 120003521 C T STEAP3 Missense_Mutation p.S160F 0.36 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 120005350 120005350 G A STEAP3 Silent p.A206A 0.29 TCGA-19-5956-01 2 120129855 120129855 C T DBI Silent p.I136I 0.25 TCGA-19-5956-01 2 120702811 120702811 C T PTPN4 Missense_Mutation p.P504S 0.08 tolerated(0.99) benign(0) TCGA-19-5956-01 2 121747303 121747303 C T GLI2 Silent p.S1271S 0.23 TCGA-19-5956-01 2 127806030 127806031 - A BIN1 3'UTR 0.29 TCGA-19-5956-01 2 127808011 127808011 T G BIN1 Missense_Mutation p.N554H 0.19 deleterious(0.01) benign(0.374) TCGA-19-5956-01 2 127828360 127828360 C T BIN1 Silent p.R66R 0.21 TCGA-19-5956-01 2 128047064 128047064 G A ERCC3 Missense_Mutation p.A224V 0.29 tolerated(0.24) benign(0.001) TCGA-19-5956-01 2 128253619 128253619 G A IWS1 Silent p.D557D 0.35 TCGA-19-5956-01 2 128263313 128263313 G A IWS1 Nonsense_Mutation p.R56* 0.64 TCGA-19-5956-01 2 128408593 128408593 A G GPR17 Missense_Mutation p.N123S 0.08 tolerated(0.58) benign(0.016) TCGA-19-5956-01 2 128699496 128699496 C A SAP130 3'UTR 0.13 TCGA-19-5956-01 2 128707869 128707869 G A SAP130 Nonsense_Mutation p.R872* 0.27 TCGA-19-5956-01 2 128892496 128892496 A G UGGT1 Missense_Mutation p.N515S 0.33 tolerated(0.2) benign(0) TCGA-19-5956-01 2 128944307 128944307 A G UGGT1 Silent p.Q1470Q 0.12 TCGA-19-5956-01 2 129025796 129025796 G A HS6ST1 Silent p.A392A 0.65 TCGA-19-5956-01 2 131129875 131129875 C A PTPN18 Silent p.T353T 0.33 TCGA-19-5956-01 2 131487375 131487375 C A GPR148 Silent p.V217V 0.23 TCGA-19-5956-01 2 132010512 132010512 G A POTEE Missense_Mutation p.E540K 0.55 deleterious_low_confidence(0) benign(0.305) TCGA-19-5956-01 2 132235739 132235739 C T TUBA3D Silent p.R2R 0.09 TCGA-19-5956-01 2 132274525 132274525 G T AC093838.4 RNA 0.51 TCGA-19-5956-01 2 135655974 135655974 A C ACMSD Missense_Mutation p.I305L 0.34 deleterious(0.05) benign(0.282) TCGA-19-5956-01 2 135711346 135711346 G T CCNT2 Nonsense_Mutation p.E441* 0.32 TCGA-19-5956-01 2 135743788 135743788 C T MAP3K19 Missense_Mutation p.R885Q 0.27 tolerated(1) benign(0) TCGA-19-5956-01 2 135890463 135890463 A G RAB3GAP1 Splice_Site p.X413_splice 0.35 TCGA-19-5956-01 2 136545917 136545917 A C LCT Missense_Mutation p.L1921V 0.04 tolerated_low_confidence(0.09) benign(0.148) TCGA-19-5956-01 2 136630394 136630394 C T MCM6 Missense_Mutation p.E43K 0.33 tolerated(0.07) benign(0.133) TCGA-19-5956-01 2 138413199 138413199 C A THSD7B Silent p.I1361I 0.24 TCGA-19-5956-01 2 139428564 139428564 A C NXPH2 Missense_Mutation p.D241E 0.72 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 140990838 140990838 G A LRP1B Nonsense_Mutation p.R4573* 0.19 TCGA-19-5956-01 2 141093343 141093343 G T LRP1B Missense_Mutation p.T3986N 0.30 benign(0.403) TCGA-19-5956-01 2 141299487 141299487 A C LRP1B Missense_Mutation p.N2416K 0.25 benign(0.403) TCGA-19-5956-01 2 141457922 141457922 A G LRP1B Silent p.N2232N 0.58 TCGA-19-5956-01 2 141625348 141625348 G A LRP1B Nonsense_Mutation p.R1464* 0.30 TCGA-19-5956-01 2 143787195 143787195 G T KYNU Splice_Site p.X301_splice 0.17 TCGA-19-5956-01 2 144525744 144525744 G T ARHGAP15 3'UTR 0.33 TCGA-19-5956-01 2 145147129 145147129 C T ZEB2 Silent p.T1178T 0.25 TCGA-19-5956-01 2 145156526 145156526 G T ZEB2 Missense_Mutation p.S743Y 0.30 deleterious(0.01) possibly_damaging(0.459) TCGA-19-5956-01 2 145157024 145157024 A G ZEB2 Missense_Mutation p.I577T 0.29 tolerated(0.57) benign(0.06) TCGA-19-5956-01 2 145157076 145157076 G A ZEB2 Missense_Mutation p.R560C 0.30 deleterious(0.02) benign(0.018) TCGA-19-5956-01 2 145157838 145157838 C A ZEB2 Splice_Site p.X306_splice 0.18 TCGA-19-5956-01 2 148680601 148680601 G T ACVR2A Missense_Mutation p.R379S 0.26 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 2 149243513 149243513 C A MBD5 Missense_Mutation p.N1016K 0.22 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 2 149528888 149528888 C A EPC2 Missense_Mutation p.T551N 0.55 tolerated(0.49) benign(0.032) TCGA-19-5956-01 2 149847689 149847689 G A KIF5C Missense_Mutation p.A628T 0.19 tolerated(0.15) benign(0.009) TCGA-19-5956-01 2 149857245 149857245 C T KIF5C Silent p.N774N 0.10 TCGA-19-5956-01 2 152112258 152112258 C A RBM43 Splice_Site p.X2_splice 0.13 TCGA-19-5956-01 2 152139389 152139389 T C NMI Missense_Mutation p.Q25R 0.33 deleterious(0.05) benign(0.01) TCGA-19-5956-01 2 152317708 152317708 A C RIF1 Missense_Mutation p.E1044D 0.26 deleterious(0.05) probably_damaging(0.926) TCGA-19-5956-01 2 152319634 152319634 T G RIF1 Missense_Mutation p.S1200R 0.58 deleterious(0.04) benign(0.043) TCGA-19-5956-01 2 152320832 152320832 C T RIF1 Nonsense_Mutation p.Q1600* 0.33 TCGA-19-5956-01 2 152388386 152388386 T G NEB Missense_Mutation p.K7148Q 0.64 possibly_damaging(0.644) TCGA-19-5956-01 2 152496926 152496926 G A NEB Silent p.C2876C 0.30 TCGA-19-5956-01 2 152522791 152522791 T C NEB Missense_Mutation p.K1615R 0.30 benign(0.069) TCGA-19-5956-01 2 152582002 152582002 G A NEB Missense_Mutation p.R123C 0.36 probably_damaging(0.975) TCGA-19-5956-01 2 152659722 152659722 T A ARL5A 3'UTR 0.40 TCGA-19-5956-01 2 153000348 153000348 C T STAM2 Missense_Mutation p.D233N 0.51 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 15330493 15330493 C T NBAS Missense_Mutation p.R2156H 0.57 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 15417106 15417106 C T NBAS Missense_Mutation p.G1753D 0.61 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 15492206 15492206 C A NBAS Splice_Site p.X1364_splice 0.58 TCGA-19-5956-01 2 155711496 155711496 G T KCNJ3 Missense_Mutation p.D393Y 0.10 deleterious(0.01) possibly_damaging(0.526) TCGA-19-5956-01 2 15614366 15614366 G A NBAS Missense_Mutation p.S475F 0.09 deleterious(0.01) benign(0.219) TCGA-19-5956-01 2 15701369 15701369 C A NBAS Missense_Mutation p.E20D 0.27 tolerated(0.15) benign(0.134) TCGA-19-5956-01 2 157185866 157185866 C T NR4A2 Missense_Mutation p.R278H 0.89 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 2 157332703 157332703 A G GPD2 Missense_Mutation p.H29R 0.19 tolerated(0.58) benign(0.021) TCGA-19-5956-01 2 15770154 15770154 C T DDX1 Missense_Mutation p.S671F 0.62 deleterious(0.02) benign(0.281) TCGA-19-5956-01 2 158114793 158114793 T G GALNT5 Missense_Mutation p.F67V 0.14 tolerated(0.2) benign(0.009) TCGA-19-5956-01 2 158178017 158178017 C A ERMN Missense_Mutation p.K220N 0.33 deleterious(0) probably_damaging(0.964) TCGA-19-5956-01 2 158395216 158395216 C A ACVR1C Splice_Site p.X409_splice 0.19 TCGA-19-5956-01 2 159107374 159107374 T G CCDC148 Missense_Mutation p.E387D 0.16 tolerated(0.38) possibly_damaging(0.801) TCGA-19-5956-01 2 159519495 159519495 C T PKP4 Silent p.N766N 0.28 TCGA-19-5956-01 2 160035069 160035069 A C TANC1 Missense_Mutation p.E635D 0.08 tolerated(0.26) probably_damaging(0.935) TCGA-19-5956-01 2 160132074 160132074 G T WDSUB1 Missense_Mutation p.S220Y 0.11 tolerated(1) possibly_damaging(0.866) TCGA-19-5956-01 2 160294918 160294918 T C BAZ2B Missense_Mutation p.T397A 0.35 benign(0.217) TCGA-19-5956-01 2 160690648 160690648 G A LY75-CD302 Missense_Mutation p.P1250S 0.32 tolerated(0.16) benign(0.127) TCGA-19-5956-01 2 160755537 160755537 G A LY75-CD302 Missense_Mutation p.T43M 0.25 tolerated(0.08) probably_damaging(0.994) TCGA-19-5956-01 2 16082206 16082206 C T MYCN Missense_Mutation p.S7F 0.37 deleterious_low_confidence(0.02) probably_damaging(0.948) TCGA-19-5956-01 2 160983032 160983032 C T ITGB6 Missense_Mutation p.D581N 0.26 tolerated(0.06) benign(0.001) TCGA-19-5956-01 2 160994243 160994243 G A ITGB6 Silent p.C454C 0.24 TCGA-19-5956-01 2 162868487 162868487 G T DPP4 Missense_Mutation p.P550T 0.38 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 163241215 163241215 C A KCNH7 Missense_Mutation p.R982I 0.27 tolerated(0.16) benign(0.009) TCGA-19-5956-01 2 163253249 163253249 C T KCNH7 Splice_Site p.X871_splice 0.42 TCGA-19-5956-01 2 164466672 164466672 G A FIGN Missense_Mutation p.A557V 0.26 deleterious(0.01) benign(0.055) TCGA-19-5956-01 2 1652621 1652621 G A PXDN Silent p.R977R 0.19 TCGA-19-5956-01 2 165548786 165548786 C T COBLL1 Missense_Mutation p.R1120Q 0.32 deleterious(0.03) possibly_damaging(0.783) TCGA-19-5956-01 2 165551796 165551796 C A COBLL1 Missense_Mutation p.K740N 0.32 deleterious(0.02) probably_damaging(0.92) TCGA-19-5956-01 2 165579012 165579012 T G COBLL1 Missense_Mutation p.N228H 0.21 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 2 166003303 166003303 G T SCN3A Missense_Mutation p.F539L 0.34 tolerated(0.53) benign(0.003) TCGA-19-5956-01 2 166211113 166211113 G T SCN2A Nonsense_Mutation p.E1111* 0.12 TCGA-19-5956-01 2 166245259 166245259 C T SCN2A Missense_Mutation p.T1648M 0.33 deleterious(0.04) probably_damaging(0.979) TCGA-19-5956-01 2 166535429 166535429 C T CSRNP3 Silent p.S308S 0.39 TCGA-19-5956-01 2 166740394 166740394 C A TTC21B Missense_Mutation p.K1198N 0.17 deleterious(0) possibly_damaging(0.666) TCGA-19-5956-01 2 166769103 166769103 G A TTC21B Missense_Mutation p.A748V 0.05 deleterious(0.01) probably_damaging(0.976) TCGA-19-5956-01 2 166900457 166900457 C T SCN1A Missense_Mutation p.D589N 0.13 tolerated(0.06) probably_damaging(0.912) TCGA-19-5956-01 2 167262560 167262560 G T SCN7A Missense_Mutation p.P1527T 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 2 167289178 167289178 G T SCN7A Missense_Mutation p.L748I 0.23 tolerated(0.06) benign(0.032) TCGA-19-5956-01 2 167327131 167327131 T G SCN7A Missense_Mutation p.N220H 0.44 deleterious(0.04) benign(0.086) TCGA-19-5956-01 2 168100111 168100111 G A XIRP2 Missense_Mutation p.E737K 0.30 probably_damaging(0.999) TCGA-19-5956-01 2 168103475 168103475 C T XIRP2 Missense_Mutation p.T1858M 0.30 benign(0.143) TCGA-19-5956-01 2 168105813 168105813 C T XIRP2 Silent p.V2637V 0.35 TCGA-19-5956-01 2 168106600 168106600 G A XIRP2 Missense_Mutation p.E2900K 0.31 benign(0.001) TCGA-19-5956-01 2 168725564 168725564 C A B3GALT1 Silent p.V5V 0.26 TCGA-19-5956-01 2 169622113 169622113 C T CERS6 Missense_Mutation p.T286I 0.21 deleterious(0) probably_damaging(0.918) TCGA-19-5956-01 2 169842719 169842719 G A ABCB11 Silent p.F328F 0.26 TCGA-19-5956-01 2 169851960 169851960 C T ABCB11 Silent p.Q170Q 0.32 TCGA-19-5956-01 2 169874588 169874588 C A ABCB11 Missense_Mutation p.E16D 0.14 tolerated(0.34) benign(0.012) TCGA-19-5956-01 2 169996064 169996064 G T LRP2 Missense_Mutation p.S4419Y 0.24 possibly_damaging(0.515) TCGA-19-5956-01 2 170009382 170009382 G T LRP2 Missense_Mutation p.L4130I 0.23 benign(0.001) TCGA-19-5956-01 2 170027148 170027148 G A LRP2 Nonsense_Mutation p.R3765* 0.20 TCGA-19-5956-01 2 170059343 170059343 C T LRP2 Missense_Mutation p.R2711H 0.64 benign(0.032) TCGA-19-5956-01 2 170083049 170083049 G T LRP2 Silent p.I1759I 0.19 TCGA-19-5956-01 2 170112639 170112639 G A LRP2 Missense_Mutation p.P916L 0.18 probably_damaging(1) TCGA-19-5956-01 2 170394649 170394649 A C FASTKD1 Missense_Mutation p.L650V 0.17 tolerated(0.07) benign(0.426) TCGA-19-5956-01 2 170411647 170411647 C A FASTKD1 Nonsense_Mutation p.E401* 0.45 TCGA-19-5956-01 2 171358315 171358315 C T MYO3B Missense_Mutation p.R1104W 0.10 deleterious(0) benign(0.069) TCGA-19-5956-01 2 171854253 171854253 A C TLK1 Missense_Mutation p.V662G 0.05 deleterious(0) possibly_damaging(0.891) TCGA-19-5956-01 2 172182415 172182415 T C METTL8 Silent p.G323G 0.15 TCGA-19-5956-01 2 172701007 172701007 C A SLC25A12 Nonsense_Mutation p.E113* 0.56 TCGA-19-5956-01 2 172967039 172967039 G A DLX2 Silent p.G76G 0.67 TCGA-19-5956-01 2 173349876 173349876 A C ITGA6 Missense_Mutation p.I580L 0.65 deleterious(0.02) possibly_damaging(0.495) TCGA-19-5956-01 2 173429792 173429792 G T PDK1 Missense_Mutation p.V228F 0.13 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 2 174123534 174123534 G T MLTK Missense_Mutation p.K489N 0.31 deleterious(0.01) possibly_damaging(0.884) TCGA-19-5956-01 2 175333662 175333662 C A GPR155 Missense_Mutation p.S387I 0.06 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 2 175437011 175437011 G A WIPF1 Silent p.P174P 0.57 TCGA-19-5956-01 2 176804305 176804305 A C KIAA1715 Missense_Mutation p.L263V 0.15 tolerated(0.05) probably_damaging(0.951) TCGA-19-5956-01 2 17697723 17697723 T A RAD51AP2 Nonsense_Mutation p.R654* 0.43 TCGA-19-5956-01 2 176981552 176981552 C A HOXD10 5'UTR 0.21 TCGA-19-5956-01 2 17699015 17699015 C A RAD51AP2 Missense_Mutation p.R223I 0.28 deleterious(0) benign(0.101) TCGA-19-5956-01 2 176995401 176995401 G A HOXD8 Missense_Mutation p.A103T 0.22 tolerated(0.3) benign(0.022) TCGA-19-5956-01 2 177036979 177036979 G A HOXD3 Missense_Mutation p.A426T 0.09 deleterious(0) probably_damaging(0.945) TCGA-19-5956-01 2 177135064 177135064 G A MTX2 Intron 0.52 TCGA-19-5956-01 2 178097913 178097913 G A NFE2L2 Intron 0.40 TCGA-19-5956-01 2 178402968 178402968 T G AGPS 3'UTR 0.45 TCGA-19-5956-01 2 178417114 178417114 C T TTC30B Silent p.E126E 0.28 TCGA-19-5956-01 2 178481843 178481843 C T TTC30A Silent p.E529E 0.22 TCGA-19-5956-01 2 178482390 178482390 G A TTC30A Missense_Mutation p.A347V 0.28 tolerated(0.05) benign(0.033) TCGA-19-5956-01 2 178482900 178482900 A C TTC30A Missense_Mutation p.F177C 0.23 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 2 178936895 178936895 G A PDE11A Silent p.G90G 0.12 TCGA-19-5956-01 2 178981008 178981008 G A RBM45 Missense_Mutation p.R107Q 0.11 deleterious(0.01) possibly_damaging(0.809) TCGA-19-5956-01 2 179401936 179401936 G A TTN Silent p.I33300I 0.57 TCGA-19-5956-01 2 179411086 179411086 G T TTN Missense_Mutation p.L31658I 0.17 TCGA-19-5956-01 2 179425311 179425311 G T TTN Silent p.L28516L 0.18 TCGA-19-5956-01 2 17942740 17942740 A G GEN1 Missense_Mutation p.K80R 0.11 tolerated(0.16) benign(0.072) TCGA-19-5956-01 2 179429918 179429918 G A TTN Missense_Mutation p.R26981W 0.60 TCGA-19-5956-01 2 179440258 179440258 G A TTN Missense_Mutation p.S23534F 0.60 TCGA-19-5956-01 2 179442512 179442512 G A TTN Nonsense_Mutation p.R22881* 0.35 TCGA-19-5956-01 2 179443831 179443831 G A TTN Silent p.G22642G 0.31 TCGA-19-5956-01 2 179453455 179453455 A C TTN Missense_Mutation p.F20999L 0.14 TCGA-19-5956-01 2 179454384 179454384 G A TTN Missense_Mutation p.R20690W 0.14 TCGA-19-5956-01 2 179454627 179454627 G A TTN Missense_Mutation p.R20609C 0.20 TCGA-19-5956-01 2 179454830 179454830 C T TTN Missense_Mutation p.R20541K 0.56 TCGA-19-5956-01 2 179463985 179463985 C T TTN Silent p.T18845T 0.55 TCGA-19-5956-01 2 179464170 179464170 G A TTN Missense_Mutation p.R18784C 0.08 TCGA-19-5956-01 2 179464422 179464422 T G TTN Missense_Mutation p.T18736P 0.10 TCGA-19-5956-01 2 179470279 179470279 G A TTN Nonsense_Mutation p.R17915* 0.30 TCGA-19-5956-01 2 179472790 179472790 A C TTN Missense_Mutation p.I17575S 0.17 TCGA-19-5956-01 2 179474532 179474532 G T TTN Silent p.T17206T 0.11 TCGA-19-5956-01 2 179474576 179474576 C T TTN Missense_Mutation p.E17192K 0.29 TCGA-19-5956-01 2 179475801 179475801 G A TTN Missense_Mutation p.R17019C 0.28 TCGA-19-5956-01 2 179475933 179475933 G T TTN Missense_Mutation p.P16975T 0.25 TCGA-19-5956-01 2 179478857 179478857 A C TTN Missense_Mutation p.F16423V 0.44 TCGA-19-5956-01 2 179483213 179483213 G T TTN Missense_Mutation p.P15658T 0.34 TCGA-19-5956-01 2 179483430 179483430 G A TTN Missense_Mutation p.T15616M 0.23 TCGA-19-5956-01 2 179495607 179495607 C T TTN Missense_Mutation p.R14693H 0.70 TCGA-19-5956-01 2 179499246 179499246 C A TTN Nonsense_Mutation p.G14088* 0.59 TCGA-19-5956-01 2 17952539 17952539 G A GEN1 Missense_Mutation p.V263I 0.54 tolerated(0.41) benign(0.017) TCGA-19-5956-01 2 179550284 179550284 G A TTN Missense_Mutation p.H10785Y 0.25 TCGA-19-5956-01 2 179578727 179578727 G A TTN Silent p.G8886G 0.30 TCGA-19-5956-01 2 179587421 179587421 C T TTN Missense_Mutation p.G7402E 0.28 TCGA-19-5956-01 2 179594134 179594134 C A TTN Missense_Mutation p.R6250I 0.58 TCGA-19-5956-01 2 179598500 179598500 C A TTN Nonsense_Mutation p.E5206* 0.18 TCGA-19-5956-01 2 179600319 179600319 G T TTN Missense_Mutation p.L4952M 0.29 TCGA-19-5956-01 2 179610312 179610312 T A TTN Intron 0.19 TCGA-19-5956-01 2 179613084 179613084 C A TTN Intron 0.17 TCGA-19-5956-01 2 179613439 179613439 G T TTN Intron 0.51 TCGA-19-5956-01 2 179614690 179614690 C A TTN Intron 0.07 TCGA-19-5956-01 2 179615774 179615774 C A TTN Intron 0.54 TCGA-19-5956-01 2 179615903 179615903 G T TTN Intron 0.48 TCGA-19-5956-01 2 179615953 179615953 G T TTN Intron 0.19 TCGA-19-5956-01 2 179634441 179634441 C T TTN Missense_Mutation p.G2956D 0.15 TCGA-19-5956-01 2 179641444 179641444 C T TTN Missense_Mutation p.R1716H 0.31 TCGA-19-5956-01 2 179665145 179665145 G A TTN Missense_Mutation p.S187L 0.25 TCGA-19-5956-01 2 179736189 179736189 G A CCDC141 Nonsense_Mutation p.R724* 0.32 TCGA-19-5956-01 2 179979929 179979929 A G SESTD1 Missense_Mutation p.S568P 0.26 deleterious(0) possibly_damaging(0.802) TCGA-19-5956-01 2 180016066 180016066 A G SESTD1 Missense_Mutation p.L141S 0.26 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 180409606 180409606 G T ZNF385B Missense_Mutation p.S115Y 0.30 deleterious(0) possibly_damaging(0.646) TCGA-19-5956-01 2 182360650 182360650 T G ITGA4 Missense_Mutation p.V509G 0.25 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 2 183586763 183586763 G T DNAJC10 Missense_Mutation p.D127Y 0.54 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 183627489 183627489 C A DNAJC10 Silent p.A742A 0.30 TCGA-19-5956-01 2 183731031 183731031 G A FRZB Silent p.L84L 0.08 TCGA-19-5956-01 2 183829512 183829512 C A NCKAP1 Missense_Mutation p.K557N 0.37 tolerated(0.09) possibly_damaging(0.506) TCGA-19-5956-01 2 184024238 184024238 G T NUP35 Missense_Mutation p.R254I 0.10 tolerated(0.16) benign(0.074) TCGA-19-5956-01 2 185801210 185801210 C A ZNF804A Missense_Mutation p.L363I 0.47 tolerated(0.53) probably_damaging(0.967) TCGA-19-5956-01 2 185802457 185802457 T G ZNF804A Silent p.S778S 0.65 TCGA-19-5956-01 2 186670745 186670745 T G FSIP2 Missense_Mutation p.I5660S 0.63 benign(0.02) TCGA-19-5956-01 2 186672207 186672207 G T FSIP2 Missense_Mutation p.E6147D 0.08 benign(0.01) TCGA-19-5956-01 2 187500821 187500821 C T ITGAV Missense_Mutation p.S215L 0.14 deleterious(0) benign(0.304) TCGA-19-5956-01 2 187540566 187540566 C T ITGAV Missense_Mutation p.S947F 0.71 tolerated(0.2) probably_damaging(0.999) TCGA-19-5956-01 2 187540647 187540647 C T ITGAV Missense_Mutation p.S974F 0.33 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 2 187626477 187626477 C A FAM171B Missense_Mutation p.L470I 0.64 tolerated(0.33) possibly_damaging(0.761) TCGA-19-5956-01 2 189406079 189406079 C A GULP1 Intron 0.66 TCGA-19-5956-01 2 189871070 189871070 G T COL3A1 Splice_Site p.X1032_splice 0.24 TCGA-19-5956-01 2 189904059 189904059 C T COL5A2 Silent p.S1288S 0.33 TCGA-19-5956-01 2 189927594 189927594 C T COL5A2 Silent p.P658P 0.29 TCGA-19-5956-01 2 190530962 190530962 G T ASNSD1 Missense_Mutation p.S35I 0.09 deleterious(0.02) benign(0.379) TCGA-19-5956-01 2 190541558 190541558 A C ANKAR Silent p.L114L 0.11 TCGA-19-5956-01 2 190571736 190571736 C T ANKAR Silent p.I661I 0.35 TCGA-19-5956-01 2 190742151 190742151 G T PMS1 Nonsense_Mutation p.E930* 0.31 TCGA-19-5956-01 2 190921983 190921983 C T MSTN 3'UTR 0.27 TCGA-19-5956-01 2 191114418 191114418 T G HIBCH Missense_Mutation p.K233T 0.24 tolerated(0.06) benign(0.058) TCGA-19-5956-01 2 191851671 191851671 A C STAT1 Missense_Mutation p.F377C 0.30 tolerated(0.11) possibly_damaging(0.634) TCGA-19-5956-01 2 191895756 191895756 G T STAT4 Missense_Mutation p.S721Y 0.08 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 2 192011404 192011404 G A STAT4 Missense_Mutation p.R70C 0.58 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 19552902 19552902 C T OSR1 Missense_Mutation p.R222K 0.10 tolerated(0.15) possibly_damaging(0.773) TCGA-19-5956-01 2 196548527 196548527 C T SLC39A10 Silent p.I371I 0.19 TCGA-19-5956-01 2 196581634 196581634 C A SLC39A10 Missense_Mutation p.S657Y 0.14 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 196673436 196673436 C T DNAH7 Silent p.K3351K 0.68 TCGA-19-5956-01 2 196681545 196681545 C T DNAH7 Missense_Mutation p.E3190K 0.32 deleterious(0.03) possibly_damaging(0.803) TCGA-19-5956-01 2 196799425 196799425 C T DNAH7 Missense_Mutation p.E1121K 0.55 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 2 197081791 197081791 G A HECW2 Missense_Mutation p.R1479W 0.55 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 2 197092953 197092953 C A HECW2 Nonsense_Mutation p.E1264* 0.32 TCGA-19-5956-01 2 197189874 197189874 C A HECW2 Splice_Site p.X191_splice 0.29 TCGA-19-5956-01 2 197662599 197662599 C A GTF3C3 Nonsense_Mutation p.E46* 0.23 TCGA-19-5956-01 2 197674092 197674092 C A C2orf66 Missense_Mutation p.R7L 0.47 tolerated_low_confidence(0.37) benign(0) TCGA-19-5956-01 2 197711924 197711924 C T PGAP1 Silent p.G651G 0.25 TCGA-19-5956-01 2 198367951 198367951 G T HSPE1 Missense_Mutation p.D93Y 0.08 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 2 198400273 198400273 G T HSPE1-MOB4 Missense_Mutation p.R84I 0.08 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 2 198400283 198400283 C T HSPE1-MOB4 Silent p.C87C 0.20 TCGA-19-5956-01 2 198593223 198593223 C T BOLL 3'UTR 0.18 TCGA-19-5956-01 2 198950117 198950117 G A PLCL1 Missense_Mutation p.E626K 0.71 tolerated(0.07) possibly_damaging(0.665) TCGA-19-5956-01 2 198953663 198953663 C T PLCL1 Missense_Mutation p.R933W 0.14 tolerated(0.17) benign(0.187) TCGA-19-5956-01 2 200820866 200820866 C A C2orf47 Missense_Mutation p.F115L 0.13 tolerated(0.49) benign(0.02) TCGA-19-5956-01 2 20114024 20114024 C A WDR35 Missense_Mutation p.D1057Y 0.27 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 201438374 201438374 G A SGOL2 Missense_Mutation p.S1102N 0.30 tolerated(0.08) benign(0.047) TCGA-19-5956-01 2 201758035 201758035 G A NIF3L1 Missense_Mutation p.R168Q 0.22 tolerated(0.08) possibly_damaging(0.768) TCGA-19-5956-01 2 202172323 202172323 G A ALS2CR12 Silent p.F266F 0.26 TCGA-19-5956-01 2 202252648 202252648 G A TRAK2 Missense_Mutation p.R492C 0.30 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 202260067 202260067 C A TRAK2 Missense_Mutation p.Q290H 0.08 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 2 202260102 202260102 G A TRAK2 Nonsense_Mutation p.R279* 0.10 TCGA-19-5956-01 2 202626141 202626141 C T ALS2 Silent p.P192P 0.28 TCGA-19-5956-01 2 203421038 203421038 C A BMPR2 Missense_Mutation p.L884M 0.56 tolerated_low_confidence(0.11) benign(0.045) TCGA-19-5956-01 2 203630461 203630461 G T FAM117B Nonsense_Mutation p.E582* 0.75 TCGA-19-5956-01 2 203644160 203644160 C T ICA1L 3'UTR 0.36 TCGA-19-5956-01 2 203676512 203676512 C T ICA1L Silent p.K289K 0.16 TCGA-19-5956-01 2 203846280 203846280 A T CARF Missense_Mutation p.N521Y 0.33 deleterious(0.01) probably_damaging(0.975) TCGA-19-5956-01 2 204037564 204037564 C A NBEAL1 Missense_Mutation p.A2075D 0.27 tolerated(0.62) benign(0.019) TCGA-19-5956-01 2 204259500 204259500 G A ABI2 Missense_Mutation p.R213H 0.55 deleterious(0.01) probably_damaging(0.989) TCGA-19-5956-01 2 204304637 204304637 A C RAPH1 Silent p.V1092V 0.31 TCGA-19-5956-01 2 204599511 204599511 G T CD28 Missense_Mutation p.R180M 0.29 deleterious(0) possibly_damaging(0.497) TCGA-19-5956-01 2 204732652 204732652 G A CTLA4 5'UTR 0.13 TCGA-19-5956-01 2 205978241 205978241 C A PARD3B Missense_Mutation p.S207Y 0.37 deleterious(0.01) possibly_damaging(0.847) TCGA-19-5956-01 2 205989162 205989162 G A PARD3B Missense_Mutation p.R426H 0.12 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 206023458 206023458 G C PARD3B Intron 0.06 TCGA-19-5956-01 2 206036984 206036984 C A PARD3B Missense_Mutation p.S495Y 0.09 deleterious(0) probably_damaging(0.924) TCGA-19-5956-01 2 206607953 206607953 A G NRP2 Missense_Mutation p.M440V 0.26 deleterious(0.04) benign(0.062) TCGA-19-5956-01 2 206659685 206659685 G A NRP2 Missense_Mutation p.R900Q 0.27 deleterious(0.03) probably_damaging(0.998) TCGA-19-5956-01 2 206980855 206980855 G A AC007383.4 RNA 0.21 TCGA-19-5956-01 2 207026126 207026126 C A EEF1B2 Missense_Mutation p.T87N 0.32 tolerated(0.15) benign(0.002) TCGA-19-5956-01 2 207171402 207171402 C T ZDBF2 Missense_Mutation p.S717L 0.10 deleterious(0.02) possibly_damaging(0.693) TCGA-19-5956-01 2 207174276 207174276 G A ZDBF2 Missense_Mutation p.R1675Q 0.27 tolerated(0.07) benign(0.238) TCGA-19-5956-01 2 207174442 207174442 G A ZDBF2 Silent p.S1730S 0.17 TCGA-19-5956-01 2 207175817 207175817 G T ZDBF2 Missense_Mutation p.G2189C 0.27 tolerated(0.16) probably_damaging(0.965) TCGA-19-5956-01 2 207408002 207408002 G A ADAM23 Missense_Mutation p.V228M 0.11 tolerated(0.17) benign(0.05) TCGA-19-5956-01 2 207615789 207615789 G A MDH1B Silent p.D307D 0.61 TCGA-19-5956-01 2 207656467 207656467 A C FASTKD2 Missense_Mutation p.K692Q 0.31 tolerated(0.1) benign(0.444) TCGA-19-5956-01 2 207825643 207825643 G A CPO Missense_Mutation p.R184Q 0.26 tolerated(0.07) possibly_damaging(0.723) TCGA-19-5956-01 2 207945857 207945857 G A KLF7 3'UTR 0.20 TCGA-19-5956-01 2 20840938 20840938 G T HS1BP3 Silent p.V67V 0.32 TCGA-19-5956-01 2 208611859 208611859 C T CCNYL1 Missense_Mutation p.A192V 0.31 deleterious(0) probably_damaging(0.954) TCGA-19-5956-01 2 208615770 208615770 G A CCNYL1 Missense_Mutation p.R248H 0.25 deleterious(0.02) possibly_damaging(0.78) TCGA-19-5956-01 2 208632833 208632833 G A FZD5 Missense_Mutation p.R211W 0.52 deleterious(0.01) possibly_damaging(0.881) TCGA-19-5956-01 2 208725861 208725861 G A PLEKHM3 Silent p.I692I 0.29 TCGA-19-5956-01 2 208865991 208865991 G A PLEKHM3 Missense_Mutation p.R125C 0.39 tolerated(0.11) probably_damaging(0.998) TCGA-19-5956-01 2 209025539 209025539 C T CRYGA Missense_Mutation p.D172N 0.11 deleterious(0.05) benign(0.198) TCGA-19-5956-01 2 209142361 209142361 G A PIKFYVE Missense_Mutation p.R181Q 0.12 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 209214769 209214769 C T PIKFYVE Missense_Mutation p.T1799I 0.32 tolerated(0.2) benign(0.035) TCGA-19-5956-01 2 209358140 209358140 G A PTH2R Missense_Mutation p.R470H 0.76 deleterious(0.04) benign(0.011) TCGA-19-5956-01 2 210560162 210560162 G A MAP2 Missense_Mutation p.A1090T 0.26 tolerated_low_confidence(0.05) benign(0.021) TCGA-19-5956-01 2 211302579 211302579 G A LANCL1 Silent p.S236S 0.27 TCGA-19-5956-01 2 211518806 211518806 G A CPS1 Missense_Mutation p.A1186T 0.26 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 2 21232338 21232338 G A APOB Silent p.L2468L 0.34 TCGA-19-5956-01 2 215610497 215610497 C T BARD1 Missense_Mutation p.E587K 0.22 tolerated(1) benign(0.005) TCGA-19-5956-01 2 215884373 215884373 G A ABCA12 Silent p.L479L 0.27 TCGA-19-5956-01 2 215896695 215896695 C T ABCA12 Intron 0.89 TCGA-19-5956-01 2 215917248 215917248 C T ABCA12 Missense_Mutation p.G157D 0.23 tolerated(0.28) benign(0.002) TCGA-19-5956-01 2 215928835 215928835 C A ABCA12 Missense_Mutation p.D91Y 0.62 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 2 216232684 216232684 G A FN1 Missense_Mutation p.A2307V 0.23 tolerated(0.18) possibly_damaging(0.46) TCGA-19-5956-01 2 216240416 216240416 C A FN1 Missense_Mutation p.K1971N 0.25 tolerated(0.36) probably_damaging(0.997) TCGA-19-5956-01 2 216262429 216262429 G A FN1 Missense_Mutation p.A1164V 0.24 deleterious(0.04) benign(0.321) TCGA-19-5956-01 2 216271998 216271998 T G FN1 Missense_Mutation p.E855D 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 2 217279523 217279523 G A SMARCAL1 Silent p.Q32Q 0.59 TCGA-19-5956-01 2 218762550 218762550 G A TNS1 Missense_Mutation p.L47F 0.68 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 218999729 218999729 G A CXCR2 Missense_Mutation p.V69M 0.29 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 219110210 219110210 C T ARPC2 Missense_Mutation p.P206L 0.10 deleterious(0) possibly_damaging(0.902) TCGA-19-5956-01 2 219256129 219256129 G A SLC11A1 Missense_Mutation p.A359T 0.27 tolerated(0.06) benign(0.14) TCGA-19-5956-01 2 219294153 219294153 C T VIL1 Missense_Mutation p.A238V 0.26 tolerated(0.15) benign(0.007) TCGA-19-5956-01 2 219297563 219297563 C T VIL1 Silent p.A463A 0.62 TCGA-19-5956-01 2 219319739 219319739 C T USP37 Missense_Mutation p.E952K 0.53 tolerated(0.05) benign(0.146) TCGA-19-5956-01 2 219521159 219521159 C T ZNF142 5'UTR 0.33 TCGA-19-5956-01 2 219549940 219549940 G A STK36 Missense_Mutation p.A457T 0.43 tolerated(0.22) benign(0.003) TCGA-19-5956-01 2 219613622 219613622 G A TTLL4 Silent p.E855E 0.11 TCGA-19-5956-01 2 219695035 219695035 G A PRKAG3 Missense_Mutation p.A100V 0.59 deleterious_low_confidence(0) benign(0.219) TCGA-19-5956-01 2 219893019 219893019 C T CCDC108 Silent p.R585R 0.39 TCGA-19-5956-01 2 220044919 220044919 G A FAM134A Silent p.Q169Q 0.32 TCGA-19-5956-01 2 220045402 220045402 G A FAM134A Missense_Mutation p.R189Q 0.30 tolerated(0.18) possibly_damaging(0.904) TCGA-19-5956-01 2 220111843 220111843 G A STK16 Silent p.T105T 0.36 TCGA-19-5956-01 2 220115265 220115265 C T TUBA4A Missense_Mutation p.E386K 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.863) TCGA-19-5956-01 2 220285013 220285013 G A DES Missense_Mutation p.R227H 0.24 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 2 220338622 220338622 G A SPEG Missense_Mutation p.A1482T 0.28 probably_damaging(0.998) TCGA-19-5956-01 2 220354185 220354185 G A SPEG Silent p.P2815P 0.18 TCGA-19-5956-01 2 220401815 220401815 C A ASIC4 Missense_Mutation p.F527L 0.30 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 2 220422981 220422981 C T OBSL1 Missense_Mutation p.A1143T 0.41 deleterious(0.03) benign(0.365) TCGA-19-5956-01 2 222428957 222428957 C A EPHA4 Missense_Mutation p.R106M 0.10 deleterious(0.05) probably_damaging(0.99) TCGA-19-5956-01 2 223066118 223066118 A G PAX3 Intron 0.08 TCGA-19-5956-01 2 223488436 223488436 T G FARSB Missense_Mutation p.K395T 0.33 deleterious(0.01) possibly_damaging(0.88) TCGA-19-5956-01 2 225651780 225651780 G A DOCK10 Missense_Mutation p.R1872W 0.41 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 225669950 225669950 G A DOCK10 Missense_Mutation p.L1342F 0.28 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 226273793 226273793 G A NYAP2 Missense_Mutation p.R66Q 0.25 deleterious(0.02) benign(0.002) TCGA-19-5956-01 2 227662612 227662612 G A IRS1 Silent p.S281S 0.67 TCGA-19-5956-01 2 227731933 227731933 C A RHBDD1 Missense_Mutation p.N155K 0.60 deleterious(0.01) probably_damaging(0.978) TCGA-19-5956-01 2 227979351 227979351 C T COL4A4 Missense_Mutation p.G184D 0.28 probably_damaging(0.998) TCGA-19-5956-01 2 228110680 228110680 G A COL4A3 Missense_Mutation p.G112D 0.24 probably_damaging(1) TCGA-19-5956-01 2 228135662 228135662 C T COL4A3 Silent p.G584G 0.12 TCGA-19-5956-01 2 228228599 228228599 G A TM4SF20 Silent p.F177F 0.33 TCGA-19-5956-01 2 228398390 228398390 G T AGFG1 Missense_Mutation p.V338F 0.11 tolerated(0.39) benign(0.304) TCGA-19-5956-01 2 228399579 228399579 G A AGFG1 Missense_Mutation p.G372D 0.34 tolerated_low_confidence(0.15) benign(0.002) TCGA-19-5956-01 2 228401363 228401363 G A AGFG1 Missense_Mutation p.V434M 0.26 tolerated(0.12) possibly_damaging(0.845) TCGA-19-5956-01 2 228996720 228996720 C T SPHKAP Silent p.G38G 0.28 TCGA-19-5956-01 2 229890359 229890359 C T PID1 Missense_Mutation p.D246N 0.25 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 2 230902222 230902222 T - SLC16A14 Frame_Shift_Del p.K469Nfs*14 0.31 TCGA-19-5956-01 2 231072712 231072712 G A SP110 Missense_Mutation p.P298S 0.29 tolerated(0.36) possibly_damaging(0.803) TCGA-19-5956-01 2 231307785 231307785 C T SP100 Missense_Mutation p.R81C 0.09 deleterious(0) possibly_damaging(0.835) TCGA-19-5956-01 2 231407592 231407592 C A SP100 Silent p.I863I 0.10 TCGA-19-5956-01 2 232458266 232458266 G A C2orf57 Missense_Mutation p.A202T 0.29 deleterious(0.03) possibly_damaging(0.908) TCGA-19-5956-01 2 232952238 232952238 G A DIS3L2 Silent p.A136A 0.75 TCGA-19-5956-01 2 233001344 233001344 T G DIS3L2 Missense_Mutation p.F289V 0.14 deleterious(0) possibly_damaging(0.721) TCGA-19-5956-01 2 233028242 233028242 G A DIS3L2 Missense_Mutation p.V342M 0.27 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 2 233037404 233037404 A G DIS3L2 Intron 0.42 TCGA-19-5956-01 2 233128085 233128085 C A DIS3L2 Missense_Mutation p.L532I 0.26 deleterious(0.01) probably_damaging(0.991) TCGA-19-5956-01 2 233272309 233272309 C T ALPPL2 Silent p.Y102Y 0.66 TCGA-19-5956-01 2 233274378 233274378 G A ALPPL2 Silent p.A465A 0.32 TCGA-19-5956-01 2 233345521 233345521 G A ECEL1 Silent p.A686A 0.43 TCGA-19-5956-01 2 233349706 233349706 C A ECEL1 Missense_Mutation p.E317D 0.10 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 2 233392110 233392110 G A CHRND Splice_Site p.X67_splice 0.23 TCGA-19-5956-01 2 233431692 233431692 G A EIF4E2 Splice_Site p.X176_splice 0.32 TCGA-19-5956-01 2 233680449 233680449 T C GIGYF2 Splice_Site p.X757_splice 0.22 TCGA-19-5956-01 2 234078674 234078674 G A INPP5D Missense_Mutation p.R540Q 0.26 deleterious(0) probably_damaging(0.927) TCGA-19-5956-01 2 234229303 234229303 G A SAG Missense_Mutation p.R70H 0.53 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 2 234602272 234602272 C T UGT1A6 Nonsense_Mutation p.R208* 0.14 TCGA-19-5956-01 2 234622109 234622109 G A UGT1A5 Missense_Mutation p.A158T 0.07 deleterious(0) benign(0.184) TCGA-19-5956-01 2 234622427 234622427 G T UGT1A5 Missense_Mutation p.D264Y 0.31 deleterious(0.02) benign(0.038) TCGA-19-5956-01 2 235949756 235949756 C T SH3BP4 Missense_Mutation p.R115W 0.33 deleterious_low_confidence(0.02) probably_damaging(0.959) TCGA-19-5956-01 2 235951051 235951051 G A SH3BP4 Silent p.T546T 0.19 TCGA-19-5956-01 2 237402449 237402449 G A IQCA1 Nonsense_Mutation p.Q140* 0.39 TCGA-19-5956-01 2 238303239 238303239 C A COL6A3 Missense_Mutation p.D234Y 0.24 probably_damaging(0.984) TCGA-19-5956-01 2 238428588 238428588 C T MLPH Silent p.F197F 0.32 TCGA-19-5956-01 2 238726943 238726943 A G RBM44 Missense_Mutation p.T462A 0.12 tolerated(0.6) benign(0.228) TCGA-19-5956-01 2 239237960 239237960 G A TRAF3IP1 Missense_Mutation p.E298K 0.19 tolerated(0.06) benign(0.137) TCGA-19-5956-01 2 239253146 239253146 G A TRAF3IP1 Missense_Mutation p.E390K 0.16 tolerated(0.1) probably_damaging(0.95) TCGA-19-5956-01 2 239990235 239990235 G A HDAC4 Missense_Mutation p.A935V 0.55 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 2 239990267 239990267 C T HDAC4 Silent p.P924P 0.26 TCGA-19-5956-01 2 241078663 241078663 T C OTOS Missense_Mutation p.D65G 0.09 deleterious(0) possibly_damaging(0.521) TCGA-19-5956-01 2 24110765 24110765 C T ATAD2B Missense_Mutation p.R170H 0.20 deleterious(0) possibly_damaging(0.766) TCGA-19-5956-01 2 241676559 241676559 C T KIF1A Missense_Mutation p.D1310N 0.35 tolerated(0.13) probably_damaging(0.997) TCGA-19-5956-01 2 242179456 242179456 G A HDLBP Missense_Mutation p.R751C 0.84 deleterious(0) probably_damaging(0.93) TCGA-19-5956-01 2 242757549 242757549 C A NEU4 Silent p.R223R 0.36 TCGA-19-5956-01 2 243061186 243061186 G A AC093642.5 RNA 0.09 TCGA-19-5956-01 2 24413441 24413441 C T FAM228A Missense_Mutation p.R188W 0.26 deleterious(0.05) benign(0.235) TCGA-19-5956-01 2 24413547 24413547 G A FAM228A 3'UTR 0.33 TCGA-19-5956-01 2 24952374 24952374 G A NCOA1 Missense_Mutation p.G964D 0.14 tolerated(0.08) probably_damaging(1) TCGA-19-5956-01 2 25037362 25037362 G T CENPO Missense_Mutation p.G112C 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 25470945 25470945 C A DNMT3A Missense_Mutation p.K272N 0.27 tolerated(0.26) benign(0.276) TCGA-19-5956-01 2 25964814 25964814 C A ASXL2 3'UTR 0.36 TCGA-19-5956-01 2 26152221 26152221 G T KIF3C Missense_Mutation p.S747R 0.32 possibly_damaging(0.651) TCGA-19-5956-01 2 26350773 26350773 A C RAB10 Missense_Mutation p.N158H 0.21 deleterious(0.02) possibly_damaging(0.573) TCGA-19-5956-01 2 26459772 26459772 C T HADHA Missense_Mutation p.V89I 0.26 deleterious(0.02) benign(0.327) TCGA-19-5956-01 2 26492820 26492820 G T HADHB Splice_Site p.X70_splice 0.10 TCGA-19-5956-01 2 26531869 26531869 G T GPR113 3'Flank 0.31 TCGA-19-5956-01 2 26647300 26647300 A C DRC1 Missense_Mutation p.K173T 0.10 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 2 26696159 26696159 G T OTOF Missense_Mutation p.L1192I 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 26805763 26805763 G T CIB4 Missense_Mutation p.L153M 0.68 deleterious(0.01) probably_damaging(0.984) TCGA-19-5956-01 2 26998046 26998046 G A SLC35F6 Silent p.A95A 0.61 TCGA-19-5956-01 2 27150219 27150219 G A DPYSL5 Silent p.E173E 0.21 TCGA-19-5956-01 2 27246978 27246978 G T MAPRE3 Missense_Mutation p.E94D 0.13 tolerated(1) benign(0.01) TCGA-19-5956-01 2 27261943 27261943 G A TMEM214 Missense_Mutation p.R479Q 0.14 tolerated(0.38) benign(0.21) TCGA-19-5956-01 2 27282102 27282102 G A AGBL5 Missense_Mutation p.R640Q 0.59 deleterious_low_confidence(0.01) probably_damaging(0.988) TCGA-19-5956-01 2 27361205 27361205 A C C2orf53 5'UTR 0.43 TCGA-19-5956-01 2 27454390 27454390 G A CAD Missense_Mutation p.R781H 0.09 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 2 27461329 27461329 G T CAD Missense_Mutation p.G1631C 0.23 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 2 27461393 27461393 G A CAD Missense_Mutation p.R1652H 0.51 tolerated(0.13) benign(0.032) TCGA-19-5956-01 2 27465181 27465181 G A CAD Silent p.K2036K 0.57 TCGA-19-5956-01 2 27479365 27479365 C T SLC30A3 Missense_Mutation p.E303K 0.28 tolerated(0.23) benign(0.121) TCGA-19-5956-01 2 27559313 27559313 G A GTF3C2 Intron 0.58 TCGA-19-5956-01 2 27565750 27565750 G A GTF3C2 Missense_Mutation p.P171L 0.30 tolerated(0.2) probably_damaging(0.937) TCGA-19-5956-01 2 27676585 27676585 C T IFT172 Missense_Mutation p.A1245T 0.37 deleterious(0.02) probably_damaging(0.963) TCGA-19-5956-01 2 27799401 27799401 G A C2orf16 5'UTR 0.38 TCGA-19-5956-01 2 27799768 27799768 G T C2orf16 Missense_Mutation p.R110I 0.29 tolerated(0.07) benign(0) TCGA-19-5956-01 2 27805428 27805428 G A C2orf16 3'UTR 0.10 TCGA-19-5956-01 2 27876495 27876495 G A SUPT7L Missense_Mutation p.P368S 0.60 deleterious_low_confidence(0.01) possibly_damaging(0.554) TCGA-19-5956-01 2 27994648 27994648 T G MRPL33 Missense_Mutation p.F2V 0.13 deleterious_low_confidence(0) benign(0.049) TCGA-19-5956-01 2 28352238 28352238 G A BRE Missense_Mutation p.R224Q 0.13 deleterious(0.04) benign(0.222) TCGA-19-5956-01 2 28531052 28531052 C A BRE Intron 0.13 TCGA-19-5956-01 2 28816935 28816935 G A PLB1 Intron 0.75 TCGA-19-5956-01 2 29092910 29092910 C T TRMT61B Silent p.G78G 0.67 TCGA-19-5956-01 2 29124983 29124983 A C WDR43 Missense_Mutation p.K119T 0.24 tolerated(0.38) possibly_damaging(0.449) TCGA-19-5956-01 2 29295581 29295581 G T C2orf71 Missense_Mutation p.S516Y 0.58 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 2 29451802 29451802 G A ALK Silent p.F921F 0.47 TCGA-19-5956-01 2 29754828 29754828 G A ALK Silent p.N369N 0.63 TCGA-19-5956-01 2 29940502 29940502 C T ALK Nonsense_Mutation p.W243* 0.16 TCGA-19-5956-01 2 30977164 30977164 G A CAPN13 Silent p.G311G 0.32 TCGA-19-5956-01 2 30986013 30986013 T C CAPN13 Missense_Mutation p.T237A 0.20 tolerated(0.6) benign(0.044) TCGA-19-5956-01 2 31135094 31135094 G A GALNT14 Nonsense_Mutation p.R504* 0.30 TCGA-19-5956-01 2 31135147 31135147 G T GALNT14 Missense_Mutation p.T486N 0.34 tolerated(0.17) benign(0.085) TCGA-19-5956-01 2 31489155 31489155 G A EHD3 Missense_Mutation p.R398H 0.37 tolerated(0.07) benign(0.025) TCGA-19-5956-01 2 31572682 31572682 G T XDH Missense_Mutation p.L947M 0.24 tolerated(1) benign(0.019) TCGA-19-5956-01 2 31590903 31590903 G T XDH Silent p.S707S 0.62 TCGA-19-5956-01 2 31593293 31593293 A C XDH Missense_Mutation p.I636M 0.27 deleterious(0.02) possibly_damaging(0.467) TCGA-19-5956-01 2 31605874 31605874 G T XDH Missense_Mutation p.S344Y 0.11 deleterious(0.02) benign(0.03) TCGA-19-5956-01 2 31805788 31805788 G A SRD5A2 RNA 0.18 TCGA-19-5956-01 2 32640328 32640328 T G BIRC6 Missense_Mutation p.L657V 0.39 benign(0.011) TCGA-19-5956-01 2 32658843 32658843 A C BIRC6 Missense_Mutation p.N1127T 0.64 probably_damaging(0.98) TCGA-19-5956-01 2 32667454 32667454 G A BIRC6 Missense_Mutation p.R1390H 0.21 probably_damaging(0.991) TCGA-19-5956-01 2 32756459 32756459 G T BIRC6 Missense_Mutation p.E4044D 0.29 benign(0.016) TCGA-19-5956-01 2 32770770 32770770 G A BIRC6 Missense_Mutation p.R4218H 0.28 probably_damaging(0.984) TCGA-19-5956-01 2 32820133 32820133 G T BIRC6 Missense_Mutation p.A4512S 0.56 benign(0.001) TCGA-19-5956-01 2 32824837 32824837 A G BIRC6 Missense_Mutation p.Y4621C 0.14 probably_damaging(1) TCGA-19-5956-01 2 33768605 33768605 C T RASGRP3 Silent p.D435D 0.59 TCGA-19-5956-01 2 33780597 33780597 G A RASGRP3 Splice_Site p.X515_splice 0.21 TCGA-19-5956-01 2 3625334 3625334 G A RPS7 Missense_Mutation p.R109H 0.56 tolerated(0.11) benign(0.005) TCGA-19-5956-01 2 36808434 36808434 C T FEZ2 Silent p.E211E 0.55 TCGA-19-5956-01 2 37235781 37235781 C T HEATR5B Missense_Mutation p.E1499K 0.29 deleterious(0) possibly_damaging(0.674) TCGA-19-5956-01 2 37291953 37291953 C A HEATR5B Missense_Mutation p.S505I 0.62 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 2 37299407 37299407 C A HEATR5B Missense_Mutation p.Q205H 0.38 tolerated(0.18) benign(0.019) TCGA-19-5956-01 2 37347227 37347227 C T EIF2AK2 Missense_Mutation p.E375K 0.21 tolerated(0.05) benign(0.32) TCGA-19-5956-01 2 37365422 37365422 C T EIF2AK2 Silent p.S226S 0.12 TCGA-19-5956-01 2 37410628 37410628 A C SULT6B1 Missense_Mutation p.I76M 0.19 deleterious(0.03) possibly_damaging(0.691) TCGA-19-5956-01 2 37444176 37444176 G A CEBPZ Missense_Mutation p.S720F 0.16 deleterious(0) probably_damaging(0.952) TCGA-19-5956-01 2 37455186 37455186 G T CEBPZ Missense_Mutation p.L384I 0.08 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 2 37455663 37455663 T A CEBPZ Missense_Mutation p.N225Y 0.14 deleterious(0.01) possibly_damaging(0.707) TCGA-19-5956-01 2 37594502 37594502 C T QPCT Missense_Mutation p.S225L 0.60 tolerated(0.06) benign(0.215) TCGA-19-5956-01 2 38178743 38178743 T C RMDN2 Missense_Mutation p.S129P 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.484) TCGA-19-5956-01 2 38956786 38956786 T C GALM Silent p.G241G 0.26 TCGA-19-5956-01 2 39055509 39055509 G T DHX57 Missense_Mutation p.S871Y 0.25 deleterious(0.05) possibly_damaging(0.492) TCGA-19-5956-01 2 39250300 39250300 G A SOS1 Silent p.N423N 0.58 TCGA-19-5956-01 2 39487912 39487912 C A MAP4K3 Missense_Mutation p.D715Y 0.11 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 2 42280493 42280493 C A PKDCC Silent p.R252R 0.37 TCGA-19-5956-01 2 42490356 42490356 C A EML4 Missense_Mutation p.S184Y 0.21 deleterious(0.01) possibly_damaging(0.498) TCGA-19-5956-01 2 42543140 42543140 C A EML4 Missense_Mutation p.S669Y 0.28 deleterious(0.04) benign(0.133) TCGA-19-5956-01 2 42556967 42556967 G T EML4 Missense_Mutation p.D856Y 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 42671720 42671720 C A KCNG3 Splice_Site p.X222_splice 0.30 TCGA-19-5956-01 2 42931405 42931405 C T MTA3 Missense_Mutation p.T366I 0.64 tolerated(0.45) benign(0.146) TCGA-19-5956-01 2 43519272 43519272 G T THADA Silent p.I1636I 0.21 TCGA-19-5956-01 2 43927520 43927520 G A PLEKHH2 Missense_Mutation p.A475T 0.33 tolerated(0.09) benign(0.126) TCGA-19-5956-01 2 44021678 44021678 A C DYNC2LI1 Missense_Mutation p.K135Q 0.33 tolerated(0.25) benign(0.2) TCGA-19-5956-01 2 44073445 44073445 G A ABCG8 Missense_Mutation p.S106N 0.10 tolerated(0.05) benign(0.071) TCGA-19-5956-01 2 44176747 44176747 G T LRPPRC Missense_Mutation p.P577T 0.30 tolerated(0.12) possibly_damaging(0.691) TCGA-19-5956-01 2 44539836 44539836 G T SLC3A1 Nonsense_Mutation p.E482* 0.31 TCGA-19-5956-01 2 44548498 44548498 G A PREPL Silent p.F727F 0.23 TCGA-19-5956-01 2 45171865 45171865 C T SIX3 Missense_Mutation p.S322L 0.50 deleterious_low_confidence(0) probably_damaging(0.93) TCGA-19-5956-01 2 45233477 45233477 C T SIX2 Silent p.P236P 0.36 TCGA-19-5956-01 2 46203610 46203610 G A PRKCE Missense_Mutation p.R152Q 0.16 tolerated(0.6) benign(0.003) TCGA-19-5956-01 2 46237485 46237485 C T PRKCE Silent p.V422V 0.29 TCGA-19-5956-01 2 46583923 46583923 C T EPAS1 Missense_Mutation p.R144C 0.63 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 2 47256405 47256405 C T TTC7A Missense_Mutation p.R562C 0.11 tolerated(0.11) benign(0) TCGA-19-5956-01 2 47739466 47739466 G T KCNK12 3'Flank 0.39 TCGA-19-5956-01 2 48809147 48809147 A C STON1-GTF2A1L Missense_Mutation p.N459H 0.28 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 48848429 48848429 G T STON1-GTF2A1L Missense_Mutation p.A787S 0.13 deleterious(0.01) probably_damaging(0.913) TCGA-19-5956-01 2 48914720 48914720 G A LHCGR 3'UTR 0.50 TCGA-19-5956-01 2 49295407 49295407 G A FSHR Nonsense_Mutation p.R59* 0.57 TCGA-19-5956-01 2 50765418 50765418 C A NRXN1 Missense_Mutation p.G746C 0.55 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 2 54080677 54080677 C T GPR75 Missense_Mutation p.R406Q 0.15 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 2 54483136 54483136 C T TSPYL6 Silent p.P51P 0.09 TCGA-19-5956-01 2 55615952 55615952 G T CCDC88A Missense_Mutation p.L79I 0.21 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 2 56419857 56419857 G T CCDC85A Missense_Mutation p.E174D 0.58 tolerated(0.08) benign(0.083) TCGA-19-5956-01 2 60689069 60689069 C T BCL11A Silent p.T326T 0.29 TCGA-19-5956-01 2 61361318 61361318 G A KIAA1841 Missense_Mutation p.R692K 0.62 unknown(0) TCGA-19-5956-01 2 61411858 61411858 G A AHSA2 5'UTR 0.71 TCGA-19-5956-01 2 61492552 61492552 G A USP34 Nonsense_Mutation p.Q1920* 0.28 TCGA-19-5956-01 2 61505573 61505573 C T USP34 Silent p.T1754T 0.45 TCGA-19-5956-01 2 61512030 61512030 C T USP34 Silent p.T1604T 0.12 TCGA-19-5956-01 2 61633019 61633020 - T USP34 Frame_Shift_Ins p.S126Ifs*8 0.31 TCGA-19-5956-01 2 61711081 61711081 C T XPO1 Missense_Mutation p.A890T 0.54 tolerated(0.08) possibly_damaging(0.804) TCGA-19-5956-01 2 62099353 62099353 C T CCT4 Missense_Mutation p.R452H 0.18 deleterious(0.01) possibly_damaging(0.48) TCGA-19-5956-01 2 62104147 62104147 G T CCT4 Missense_Mutation p.L229I 0.28 tolerated(0.2) benign(0.441) TCGA-19-5956-01 2 62449628 62449628 C A B3GNT2 Missense_Mutation p.S91R 0.56 tolerated(0.35) benign(0.019) TCGA-19-5956-01 2 63101489 63101489 C A EHBP1 Missense_Mutation p.P371H 0.65 deleterious(0) probably_damaging(0.945) TCGA-19-5956-01 2 63176266 63176266 A G EHBP1 Missense_Mutation p.N797S 0.08 tolerated_low_confidence(0.2) benign(0.375) TCGA-19-5956-01 2 63631489 63631489 C T WDPCP Missense_Mutation p.E377K 0.26 tolerated(0.36) benign(0.07) TCGA-19-5956-01 2 65237824 65237824 G A SLC1A4 Missense_Mutation p.E243K 0.72 tolerated(0.42) probably_damaging(0.999) TCGA-19-5956-01 2 67630718 67630718 C A ETAA1 Missense_Mutation p.P302T 0.10 tolerated(0.29) benign(0.011) TCGA-19-5956-01 2 69002497 69002497 T C ARHGAP25 Missense_Mutation p.V69A 0.27 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 69002506 69002506 C T ARHGAP25 Missense_Mutation p.A72V 0.07 deleterious(0) benign(0.225) TCGA-19-5956-01 2 69173431 69173431 C A GKN2 Intron 0.13 TCGA-19-5956-01 2 70037785 70037785 G T ANXA4 Missense_Mutation p.V153L 0.08 tolerated(1) probably_damaging(0.953) TCGA-19-5956-01 2 7023540 7023540 C A RSAD2 Missense_Mutation p.L129I 0.27 tolerated(0.2) benign(0.074) TCGA-19-5956-01 2 70443394 70443394 A C TIA1 Missense_Mutation p.F237C 0.24 deleterious(0) possibly_damaging(0.715) TCGA-19-5956-01 2 70504428 70504428 C T PCYOX1 Silent p.A474A 0.07 TCGA-19-5956-01 2 70903959 70903959 G A ADD2 Missense_Mutation p.A521V 0.09 deleterious(0.01) possibly_damaging(0.861) TCGA-19-5956-01 2 71209087 71209087 G A ANKRD53 Silent p.T213T 0.38 TCGA-19-5956-01 2 71220836 71220836 T C TEX261 Missense_Mutation p.Y47C 0.61 tolerated(0.12) benign(0.008) TCGA-19-5956-01 2 71361879 71361879 G T MPHOSPH10 Missense_Mutation p.K350N 0.61 tolerated(0.15) possibly_damaging(0.794) TCGA-19-5956-01 2 71429660 71429660 C T PAIP2B Silent p.G20G 0.28 TCGA-19-5956-01 2 71576560 71576560 G A ZNF638 Missense_Mutation p.R159H 0.14 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 71577327 71577327 G T ZNF638 Missense_Mutation p.D415Y 0.51 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 2 71591296 71591296 G A ZNF638 Missense_Mutation p.R544Q 0.63 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 2 71801428 71801428 G A DYSF Missense_Mutation p.R1110H 0.27 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 2 71891404 71891404 C T DYSF Silent p.F1670F 0.08 TCGA-19-5956-01 2 72406493 72406493 G A EXOC6B Nonsense_Mutation p.R803* 0.21 TCGA-19-5956-01 2 73446030 73446030 G T SMYD5 Missense_Mutation p.E46D 0.09 tolerated(0.98) benign(0.005) TCGA-19-5956-01 2 73659415 73659415 A T ALMS1 Missense_Mutation p.K476N 0.32 benign(0.291) TCGA-19-5956-01 2 73676375 73676375 C A ALMS1 Missense_Mutation p.F906L 0.29 benign(0.399) TCGA-19-5956-01 2 73989987 73989987 C A DUSP11 Splice_Site p.X312_splice 0.13 TCGA-19-5956-01 2 74317140 74317140 G A TET3 Missense_Mutation p.R867H 0.32 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 2 74328963 74328963 G A TET3 Missense_Mutation p.R1548H 0.17 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 74593071 74593071 G A DCTN1 Silent p.L945L 0.29 TCGA-19-5956-01 2 74652816 74652816 C A WDR54 Missense_Mutation p.F331L 0.31 deleterious(0.01) benign(0.362) TCGA-19-5956-01 2 74683229 74683229 G A INO80B Splice_Site p.X124_splice 0.18 TCGA-19-5956-01 2 74687101 74687101 G T WBP1 Nonsense_Mutation p.E92* 0.12 TCGA-19-5956-01 2 74690078 74690078 G A MOGS Missense_Mutation p.R280C 0.15 deleterious(0.03) possibly_damaging(0.773) TCGA-19-5956-01 2 74709234 74709234 C A CCDC142 Missense_Mutation p.G244V 0.36 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 74717565 74717565 G A TTC31 Missense_Mutation p.V143M 0.39 tolerated(0.06) benign(0.239) TCGA-19-5956-01 2 74729865 74729865 C T LBX2 Missense_Mutation p.R41Q 0.30 deleterious_low_confidence(0.04) benign(0.001) TCGA-19-5956-01 2 74760989 74760989 T C LOXL3 Intron 0.36 TCGA-19-5956-01 2 74763461 74763461 G A LOXL3 Silent p.F350F 0.14 TCGA-19-5956-01 2 74834243 74834243 G A M1AP Silent p.V178V 0.37 TCGA-19-5956-01 2 74885052 74885052 G A SEMA4F Missense_Mutation p.A144T 0.28 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 75116398 75116398 G A HK2 Missense_Mutation p.R801Q 0.53 tolerated(0.12) possibly_damaging(0.675) TCGA-19-5956-01 2 77746276 77746276 C A LRRTM4 Missense_Mutation p.R240M 0.37 deleterious(0) probably_damaging(0.975) TCGA-19-5956-01 2 80101298 80101298 C A CTNNA2 Missense_Mutation p.L228I 0.40 tolerated(0.33) benign(0.016) TCGA-19-5956-01 2 80530765 80530765 C T LRRTM1 Silent p.A60A 0.55 TCGA-19-5956-01 2 84811252 84811252 C T DNAH6 Missense_Mutation p.R787W 0.31 deleterious(0) possibly_damaging(0.843) TCGA-19-5956-01 2 85051219 85051219 T C TRABD2A Missense_Mutation p.T349A 0.24 tolerated(0.76) benign(0.009) TCGA-19-5956-01 2 85549859 85549859 T C TGOLN2 Missense_Mutation p.N444S 0.42 tolerated_low_confidence(0.52) benign(0) TCGA-19-5956-01 2 85577351 85577351 C T RETSAT Missense_Mutation p.G204E 0.25 tolerated(0.08) benign(0.027) TCGA-19-5956-01 2 85628993 85628993 C A CAPG Missense_Mutation p.E37D 0.27 tolerated(0.19) benign(0.136) TCGA-19-5956-01 2 85777223 85777223 C T GGCX Missense_Mutation p.R704Q 0.37 tolerated(0.13) possibly_damaging(0.691) TCGA-19-5956-01 2 86067180 86067180 A G ST3GAL5 3'UTR 0.12 TCGA-19-5956-01 2 86352973 86352973 G T PTCD3 Missense_Mutation p.E307D 0.23 tolerated(0.32) benign(0.011) TCGA-19-5956-01 2 86386770 86386770 A G IMMT Silent p.S307S 0.20 TCGA-19-5956-01 2 86993125 86993125 G A RMND5A Missense_Mutation p.V278M 0.32 tolerated(0.07) benign(0.105) TCGA-19-5956-01 2 87214124 87214124 G T RGPD1 Nonsense_Mutation p.E1360* 0.18 TCGA-19-5956-01 2 8919882 8919882 C A KIDINS220 Missense_Mutation p.Q764H 0.27 deleterious(0.04) possibly_damaging(0.759) TCGA-19-5956-01 2 89246843 89246843 G T IGKV1-5 Nonsense_Mutation p.Y109* 0.57 TCGA-19-5956-01 2 89292038 89292038 G A IGKV1-8 Missense_Mutation p.P79S 0.28 deleterious(0.03) benign(0.446) TCGA-19-5956-01 2 89416853 89416853 G T IGKV1-17 Missense_Mutation p.L111I 0.12 deleterious(0.04) benign(0.061) TCGA-19-5956-01 2 89476014 89476014 T C IGKV2-24 Missense_Mutation p.D53G 0.12 tolerated(0.07) benign(0.027) TCGA-19-5956-01 2 90229276 90229276 C T IGKV1D-42 Silent p.F32F 0.26 TCGA-19-5956-01 2 90260033 90260033 C T IGKV1D-8 Missense_Mutation p.R46W 0.55 deleterious(0.04) benign(0.106) TCGA-19-5956-01 2 9496316 9496316 C A ASAP2 Missense_Mutation p.S390Y 0.26 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 95519335 95519335 C T ANKRD20A8P RNA 0.29 TCGA-19-5956-01 2 95522765 95522765 C A ANKRD20A8P RNA 0.22 TCGA-19-5956-01 2 9563935 9563935 G A CPSF3 Silent p.Q11Q 0.21 TCGA-19-5956-01 2 95775787 95775787 C A MRPS5 Splice_Site p.X93_splice 0.09 TCGA-19-5956-01 2 95814970 95814970 C T ZNF514 3'UTR 0.49 TCGA-19-5956-01 2 95815415 95815415 C A ZNF514 Missense_Mutation p.S272I 0.34 deleterious(0.01) benign(0.12) TCGA-19-5956-01 2 96071307 96071307 A C FAHD2A Translation_Start_Site p.M1? 0.21 deleterious_low_confidence(0) possibly_damaging(0.813) TCGA-19-5956-01 2 96072850 96072850 T G FAHD2A Missense_Mutation p.F136C 0.23 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 2 9613090 9613090 G T CPSF3 Nonsense_Mutation p.E667* 0.26 TCGA-19-5956-01 2 9621513 9621513 G A IAH1 Missense_Mutation p.V128I 0.29 tolerated(0.9) benign(0.047) TCGA-19-5956-01 2 9661442 9661442 G A ADAM17 Missense_Mutation p.R283C 0.64 deleterious(0.01) possibly_damaging(0.592) TCGA-19-5956-01 2 96789811 96789811 G T ASTL Silent p.A358A 0.10 TCGA-19-5956-01 2 96799265 96799265 C A ASTL Missense_Mutation p.Q118H 0.28 deleterious(0.02) possibly_damaging(0.796) TCGA-19-5956-01 2 96919599 96919599 C T TMEM127 Missense_Mutation p.A222T 0.65 tolerated(0.42) benign(0.144) TCGA-19-5956-01 2 96942859 96942859 C T SNRNP200 Missense_Mutation p.E2018K 0.30 deleterious(0.01) probably_damaging(0.939) TCGA-19-5956-01 2 96970540 96970540 C T SNRNP200 Missense_Mutation p.G38R 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 2 96992204 96992204 G A ITPRIPL1 5'UTR 0.26 TCGA-19-5956-01 2 97369060 97369060 G A LMAN2L 3'Flank 0.24 TCGA-19-5956-01 2 97493887 97493887 G A CNNM3 Missense_Mutation p.A581T 0.67 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 2 9770600 9770600 G A YWHAQ 5'UTR 0.30 TCGA-19-5956-01 2 97881283 97881283 A G ANKRD36 Missense_Mutation p.K1241R 0.25 tolerated_low_confidence(0.06) benign(0.194) TCGA-19-5956-01 2 98274466 98274466 C A ACTR1B Missense_Mutation p.D289Y 0.39 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 2 98349585 98349585 C T ZAP70 Intron 0.23 TCGA-19-5956-01 2 98377320 98377320 C T TMEM131 Silent p.S1649S 0.32 TCGA-19-5956-01 2 98382962 98382962 G A TMEM131 Nonsense_Mutation p.R1518* 0.30 TCGA-19-5956-01 2 98427666 98427666 G T TMEM131 Silent p.V631V 0.15 TCGA-19-5956-01 2 98709523 98709523 G T VWA3B Splice_Site 0.26 TCGA-19-5956-01 2 98736080 98736080 G T VWA3B Missense_Mutation p.Q132H 0.33 deleterious(0.01) probably_damaging(0.971) TCGA-19-5956-01 2 98846537 98846537 G T VWA3B Missense_Mutation p.M725I 0.10 tolerated(0.23) benign(0.003) TCGA-19-5956-01 2 98887169 98887169 G A VWA3B Silent p.Q956Q 0.14 TCGA-19-5956-01 2 99811309 99811309 A G MRPL30 Silent p.R76R 0.26 TCGA-19-5956-01 3 100000595 100000595 A G TBC1D23 Missense_Mutation p.N59D 0.19 tolerated(0.58) benign(0.194) TCGA-19-5956-01 3 100065026 100065026 T C NIT2 Silent p.P144P 0.40 TCGA-19-5956-01 3 100073661 100073661 T C NIT2 Silent p.Y243Y 0.09 TCGA-19-5956-01 3 100091474 100091474 G T TOMM70A Silent p.A476A 0.21 TCGA-19-5956-01 3 10011470 10011470 C T EMC3 Missense_Mutation p.R197Q 0.26 tolerated(0.33) benign(0.025) TCGA-19-5956-01 3 101056352 101056352 C T SENP7 Splice_Site p.X827_splice 0.19 TCGA-19-5956-01 3 10106509 10106509 G T FANCD2 Missense_Mutation p.Q706H 0.17 deleterious(0.04) possibly_damaging(0.712) TCGA-19-5956-01 3 10116337 10116337 G T FANCD2 Missense_Mutation p.D947Y 0.32 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 3 101283723 101283723 T G TRMT10C Nonsense_Mutation p.L33* 0.49 TCGA-19-5956-01 3 101383479 101383479 G T ZBTB11 Missense_Mutation p.S568Y 0.26 deleterious(0.03) benign(0.165) TCGA-19-5956-01 3 101390169 101390169 T G ZBTB11 Missense_Mutation p.K195Q 0.30 tolerated(0.07) probably_damaging(0.935) TCGA-19-5956-01 3 101390995 101390995 G A ZBTB11 Nonsense_Mutation p.R125* 0.33 TCGA-19-5956-01 3 10140679 10140679 G A FANCD2 3'UTR 0.12 TCGA-19-5956-01 3 101477029 101477029 G T CEP97 Nonsense_Mutation p.E527* 0.16 TCGA-19-5956-01 3 101535761 101535761 G T NXPE3 Nonsense_Mutation p.E349* 0.10 TCGA-19-5956-01 3 101540426 101540426 G T NXPE3 Missense_Mutation p.K436N 0.49 tolerated(0.35) benign(0.127) TCGA-19-5956-01 3 101540532 101540532 G A NXPE3 Missense_Mutation p.D472N 0.27 tolerated(0.33) benign(0.111) TCGA-19-5956-01 3 101578173 101578173 C T NFKBIZ Silent p.I705I 0.45 TCGA-19-5956-01 3 105400357 105400357 C T CBLB Silent p.T798T 0.47 TCGA-19-5956-01 3 105495384 105495384 C T CBLB Missense_Mutation p.R141Q 0.17 deleterious(0.01) possibly_damaging(0.874) TCGA-19-5956-01 3 108117934 108117934 C T MYH15 Silent p.Q1659Q 0.54 TCGA-19-5956-01 3 108147651 108147651 G A MYH15 Silent p.D1150D 0.19 TCGA-19-5956-01 3 108159986 108159986 G T MYH15 Missense_Mutation p.S946Y 0.22 deleterious(0) probably_damaging(0.959) TCGA-19-5956-01 3 108163571 108163571 T C MYH15 Silent p.K877K 0.42 TCGA-19-5956-01 3 108163643 108163643 T C MYH15 Silent p.K853K 0.46 TCGA-19-5956-01 3 108175641 108175641 G A MYH15 Nonsense_Mutation p.R724* 0.52 TCGA-19-5956-01 3 108281986 108281986 A C KIAA1524 Missense_Mutation p.F541V 0.15 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 3 108298477 108298477 G A KIAA1524 Missense_Mutation p.T203I 0.41 deleterious(0) possibly_damaging(0.771) TCGA-19-5956-01 3 108363444 108363444 G A DZIP3 Silent p.Q525Q 0.09 TCGA-19-5956-01 3 108363504 108363504 G T DZIP3 Missense_Mutation p.E545D 0.10 deleterious_low_confidence(0.04) benign(0.024) TCGA-19-5956-01 3 108776193 108776193 G T MORC1 Missense_Mutation p.S391Y 0.46 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 3 108788600 108788600 G A MORC1 Missense_Mutation p.P232S 0.39 deleterious(0.03) benign(0.338) TCGA-19-5956-01 3 109027920 109027920 C T DPPA2 Missense_Mutation p.E117K 0.50 tolerated(0.07) benign(0.008) TCGA-19-5956-01 3 109031472 109031472 T C DPPA2 Missense_Mutation p.D34G 0.46 tolerated(0.06) benign(0.414) TCGA-19-5956-01 3 11067249 11067249 C T SLC6A1 Missense_Mutation p.R277C 0.19 deleterious(0) benign(0.001) TCGA-19-5956-01 3 111312341 111312341 T G ZBED2 3'UTR 0.35 TCGA-19-5956-01 3 111602946 111602946 C T PHLDB2 Nonsense_Mutation p.Q8* 0.45 TCGA-19-5956-01 3 111603188 111603188 C T PHLDB2 Silent p.I88I 0.44 TCGA-19-5956-01 3 111719717 111719717 C A TAGLN3 Silent p.I93I 0.22 TCGA-19-5956-01 3 111795941 111795941 G A TMPRSS7 Missense_Mutation p.R599H 0.48 tolerated(0.75) benign(0.002) TCGA-19-5956-01 3 111870717 111870717 G T SLC9C1 Missense_Mutation p.L1171I 0.10 tolerated_low_confidence(0.43) benign(0.014) TCGA-19-5956-01 3 111927191 111927191 A G SLC9C1 Missense_Mutation p.I607T 0.15 deleterious(0) benign(0.342) TCGA-19-5956-01 3 112066606 112066606 T C CD200 Missense_Mutation p.V233A 0.22 tolerated(0.56) benign(0.126) TCGA-19-5956-01 3 112068609 112068609 C A CD200 Missense_Mutation p.L274I 0.08 tolerated(0.16) possibly_damaging(0.742) TCGA-19-5956-01 3 112198616 112198616 C A BTLA Missense_Mutation p.G30V 0.08 deleterious(0.01) probably_damaging(0.985) TCGA-19-5956-01 3 112289388 112289388 T C SLC35A5 Silent p.D77D 0.18 TCGA-19-5956-01 3 112357249 112357249 G T CCDC80 Missense_Mutation p.L502I 0.43 deleterious(0.05) probably_damaging(0.978) TCGA-19-5956-01 3 112647811 112647811 G A CD200R1 Silent p.G207G 0.16 TCGA-19-5956-01 3 112710056 112710056 C A GTPBP8 Silent p.I70I 0.19 TCGA-19-5956-01 3 113002421 113002421 C T BOC Silent p.I865I 0.46 TCGA-19-5956-01 3 11301096 11301096 C T HRH1 Missense_Mutation p.R125C 0.48 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 11301103 11301103 G A HRH1 Missense_Mutation p.R127H 0.47 deleterious(0.02) probably_damaging(0.909) TCGA-19-5956-01 3 113098240 113098240 C A WDR52 Missense_Mutation p.E737D 0.48 deleterious(0.01) benign(0.11) TCGA-19-5956-01 3 113099865 113099865 G T WDR52 Missense_Mutation p.L645I 0.14 tolerated(0.11) possibly_damaging(0.792) TCGA-19-5956-01 3 113122806 113122806 C A WDR52 Missense_Mutation p.V355L 0.46 deleterious(0) benign(0.01) TCGA-19-5956-01 3 113145069 113145069 C A WDR52 Missense_Mutation p.K103N 0.43 tolerated(0.08) probably_damaging(0.978) TCGA-19-5956-01 3 113172461 113172461 C A SPICE1 Missense_Mutation p.R665I 0.48 deleterious(0.01) possibly_damaging(0.812) TCGA-19-5956-01 3 113187238 113187238 C T SPICE1 Silent p.P301P 0.15 TCGA-19-5956-01 3 113325912 113325912 G T SIDT1 Missense_Mutation p.D477Y 0.17 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 113327017 113327017 G A SIDT1 Missense_Mutation p.D519N 0.18 deleterious(0.01) probably_damaging(0.948) TCGA-19-5956-01 3 113374645 113374645 C T KIAA2018 Missense_Mutation p.D1962N 0.20 possibly_damaging(0.595) TCGA-19-5956-01 3 113376549 113376549 G T KIAA2018 Missense_Mutation p.S1327Y 0.21 possibly_damaging(0.907) TCGA-19-5956-01 3 113376936 113376936 G T KIAA2018 Missense_Mutation p.S1198Y 0.11 possibly_damaging(0.526) TCGA-19-5956-01 3 113377732 113377732 C T KIAA2018 Missense_Mutation p.D933N 0.10 benign(0.002) TCGA-19-5956-01 3 113379065 113379065 C T KIAA2018 Silent p.G488G 0.61 TCGA-19-5956-01 3 113380237 113380237 C A KIAA2018 Nonsense_Mutation p.E98* 0.19 TCGA-19-5956-01 3 113652386 113652386 G A GRAMD1C Missense_Mutation p.R413Q 0.45 tolerated(1) benign(0) TCGA-19-5956-01 3 113753874 113753874 G A KIAA1407 Missense_Mutation p.A239V 0.41 deleterious(0.01) probably_damaging(0.977) TCGA-19-5956-01 3 114026804 114026804 G T TIGIT Missense_Mutation p.E187D 0.18 tolerated(0.23) benign(0.165) TCGA-19-5956-01 3 114057930 114057930 G A ZBTB20 Silent p.V716V 0.12 TCGA-19-5956-01 3 114070599 114070599 C T ZBTB20 Missense_Mutation p.R109H 0.10 deleterious(0.04) probably_damaging(0.991) TCGA-19-5956-01 3 118621614 118621614 C T IGSF11 Missense_Mutation p.G350D 0.49 deleterious(0.03) possibly_damaging(0.663) TCGA-19-5956-01 3 118865605 118865605 C T C3orf30 Missense_Mutation p.A190V 0.20 deleterious(0.03) benign(0.038) TCGA-19-5956-01 3 118906821 118906821 C T UPK1B Missense_Mutation p.A90V 0.08 tolerated(0.96) benign(0.002) TCGA-19-5956-01 3 119109752 119109752 G A ARHGAP31 Missense_Mutation p.R268K 0.43 tolerated(0.06) benign(0.087) TCGA-19-5956-01 3 119196196 119196196 C T POGLUT1 Silent p.I119I 0.23 TCGA-19-5956-01 3 119246649 119246649 C A CD80 Missense_Mutation p.R279I 0.13 tolerated(0.17) unknown(0) TCGA-19-5956-01 3 119263495 119263495 C T CD80 Missense_Mutation p.R107H 0.55 tolerated(0.1) possibly_damaging(0.758) TCGA-19-5956-01 3 119306706 119306706 A G ADPRH Missense_Mutation p.D352G 0.25 tolerated(0.1) benign(0.045) TCGA-19-5956-01 3 119327676 119327676 C T PLA1A Missense_Mutation p.T112M 0.21 tolerated(0.1) benign(0.014) TCGA-19-5956-01 3 119526202 119526202 C T NR1I2 Silent p.V74V 0.20 TCGA-19-5956-01 3 119912262 119912262 C A GPR156 Missense_Mutation p.K81N 0.23 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 120115724 120115724 G T FSTL1 3'UTR 0.23 TCGA-19-5956-01 3 120673881 120673881 G A STXBP5L Missense_Mutation p.R95Q 0.24 deleterious(0.01) benign(0.009) TCGA-19-5956-01 3 121100377 121100377 G A STXBP5L Missense_Mutation p.S886N 0.15 tolerated(0.25) benign(0.302) TCGA-19-5956-01 3 121202354 121202354 G T POLQ Missense_Mutation p.S1950Y 0.26 tolerated(0.19) probably_damaging(0.944) TCGA-19-5956-01 3 121305074 121305074 A C ARGFX Missense_Mutation p.N192T 0.13 deleterious(0.02) benign(0.157) TCGA-19-5956-01 3 121342037 121342037 C A FBXO40 Missense_Mutation p.F587L 0.22 deleterious(0.01) probably_damaging(0.973) TCGA-19-5956-01 3 121356081 121356081 G A HCLS1 Silent p.G159G 0.56 TCGA-19-5956-01 3 121414294 121414294 C A GOLGB1 Missense_Mutation p.Q1692H 0.23 probably_damaging(0.979) TCGA-19-5956-01 3 121414685 121414685 C T GOLGB1 Missense_Mutation p.R1562K 0.25 benign(0.011) TCGA-19-5956-01 3 121500720 121500720 G A IQCB1 Missense_Mutation p.A427V 0.09 tolerated(1) benign(0.005) TCGA-19-5956-01 3 121544966 121544966 G T IQCB1 Missense_Mutation p.P109T 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 121547426 121547426 C A IQCB1 Missense_Mutation p.D52Y 0.44 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 121825184 121825184 C T CD86 Silent p.I180I 0.46 TCGA-19-5956-01 3 122002735 122002735 C T CASR Missense_Mutation p.A655V 0.50 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 3 122247145 122247145 C T PARP9 3'UTR 0.40 TCGA-19-5956-01 3 122271301 122271302 - TA PARP9 Frame_Shift_Ins p.H393Tfs*15 0.41 TCGA-19-5956-01 3 122334657 122334657 G T PARP15 Missense_Mutation p.R268I 0.55 tolerated(0.15) benign(0.008) TCGA-19-5956-01 3 122419920 122419920 C T PARP14 Missense_Mutation p.A840V 0.22 deleterious(0.02) probably_damaging(0.998) TCGA-19-5956-01 3 122437553 122437553 C T PARP14 Nonsense_Mutation p.R1519* 0.14 TCGA-19-5956-01 3 122446790 122446790 C T PARP14 Silent p.H1691H 0.14 TCGA-19-5956-01 3 122447569 122447569 C T PARP14 3'UTR 0.20 TCGA-19-5956-01 3 122631782 122631782 C A SEMA5B Missense_Mutation p.R932I 0.12 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 123010083 123010083 C A ADCY5 Missense_Mutation p.E1068D 0.41 tolerated(0.39) benign(0.233) TCGA-19-5956-01 3 123419423 123419423 C A MYLK Missense_Mutation p.K964N 0.10 deleterious(0.03) benign(0.403) TCGA-19-5956-01 3 123512595 123512595 C T MYLK Missense_Mutation p.A32T 0.42 tolerated(0.06) benign(0.394) TCGA-19-5956-01 3 124165109 124165109 C T KALRN Missense_Mutation p.R1137C 0.29 deleterious(0) probably_damaging(0.931) TCGA-19-5956-01 3 124209613 124209613 C T KALRN Missense_Mutation p.S1488L 0.12 tolerated(0.1) benign(0.038) TCGA-19-5956-01 3 124438324 124438324 C T RP11-71H17.7 5'Flank 0.11 TCGA-19-5956-01 3 124462761 124462761 G T UMPS Splice_Site p.X425_splice 0.25 TCGA-19-5956-01 3 12458228 12458228 C A PPARG Missense_Mutation p.S282Y 0.24 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 124854620 124854620 C T SLC12A8 Missense_Mutation p.G210D 0.12 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 12545213 12545213 A G TSEN2 Missense_Mutation p.D254G 0.41 tolerated(0.6) benign(0.002) TCGA-19-5956-01 3 12610464 12610464 C A MKRN2 Nonsense_Mutation p.Y39* 0.22 TCGA-19-5956-01 3 126135200 126135200 G T CCDC37 Missense_Mutation p.M89I 0.14 tolerated(0.1) possibly_damaging(0.51) TCGA-19-5956-01 3 126153064 126153064 C T CCDC37 Missense_Mutation p.R490W 0.07 tolerated(0.12) possibly_damaging(0.841) TCGA-19-5956-01 3 126180502 126180502 C T ZXDC Missense_Mutation p.R668H 0.41 tolerated(0.14) benign(0.004) TCGA-19-5956-01 3 12626031 12626031 C T RAF1 Silent p.P643P 0.07 TCGA-19-5956-01 3 12627209 12627209 C T RAF1 Missense_Mutation p.E503K 0.54 deleterious(0.03) benign(0.34) TCGA-19-5956-01 3 126707872 126707872 C T PLXNA1 Missense_Mutation p.L146F 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 127439918 127439918 G T MGLL Missense_Mutation p.P163H 0.19 deleterious(0) probably_damaging(0.953) TCGA-19-5956-01 3 127800173 127800173 C T RUVBL1 Missense_Mutation p.E431K 0.23 tolerated(0.4) benign(0.001) TCGA-19-5956-01 3 12790216 12790216 G T TMEM40 Missense_Mutation p.S50Y 0.45 deleterious_low_confidence(0) benign(0.406) TCGA-19-5956-01 3 12858166 12858166 C T CAND2 Missense_Mutation p.R579C 0.22 deleterious(0) possibly_damaging(0.762) TCGA-19-5956-01 3 128627855 128627855 C T ACAD9 Silent p.T466T 0.23 TCGA-19-5956-01 3 128690066 128690066 G A KIAA1257 3'UTR 0.12 TCGA-19-5956-01 3 12877709 12877709 C T RPL32 Missense_Mutation p.E98K 0.51 deleterious(0.02) benign(0.375) TCGA-19-5956-01 3 128979651 128979651 G T COPG1 Splice_Site p.X376_splice 0.25 TCGA-19-5956-01 3 128984603 128984603 G A COPG1 Missense_Mutation p.R479Q 0.18 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 3 129121393 129121393 C T EFCAB12 Missense_Mutation p.R478H 0.21 tolerated(0.15) benign(0.002) TCGA-19-5956-01 3 129147306 129147306 T G EFCAB12 Missense_Mutation p.H9P 0.35 deleterious(0.03) benign(0.131) TCGA-19-5956-01 3 129195318 129195318 C T IFT122 Missense_Mutation p.T377M 0.13 deleterious(0.01) probably_damaging(0.954) TCGA-19-5956-01 3 129252595 129252595 G A RHO 3'UTR 0.11 TCGA-19-5956-01 3 129275033 129275033 G A PLXND1 3'UTR 0.52 TCGA-19-5956-01 3 129278504 129278504 T G PLXND1 Silent p.G1752G 0.18 TCGA-19-5956-01 3 129324673 129324673 G A PLXND1 Silent p.G270G 0.17 TCGA-19-5956-01 3 130159504 130159504 G T COL6A5 Missense_Mutation p.G2108C 0.21 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 130188205 130188205 G T COL6A5 Nonsense_Mutation p.E2453* 0.47 TCGA-19-5956-01 3 130289977 130289977 G A COL6A6 Missense_Mutation p.R906H 0.28 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 130293153 130293153 G T COL6A6 Missense_Mutation p.D1111Y 0.45 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 130318629 130318629 G A COL6A6 Missense_Mutation p.G1543E 0.28 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 130887674 130887674 G A NEK11 Missense_Mutation p.E393K 0.47 tolerated(0.39) benign(0.002) TCGA-19-5956-01 3 130947458 130947458 G A NEK11 Missense_Mutation p.E496K 0.20 tolerated(0.14) benign(0.005) TCGA-19-5956-01 3 131082269 131082269 G T NUDT16P1 RNA 0.38 TCGA-19-5956-01 3 131101901 131101901 C A NUDT16 3'UTR 0.15 TCGA-19-5956-01 3 131442325 131442325 C T CPNE4 Missense_Mutation p.D109N 0.21 deleterious(0.02) benign(0.003) TCGA-19-5956-01 3 132063871 132063871 A G ACPP Missense_Mutation p.H250R 0.32 deleterious(0.04) possibly_damaging(0.892) TCGA-19-5956-01 3 132075615 132075615 C T ACPP Missense_Mutation p.P352S 0.41 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 3 132176117 132176117 C T DNAJC13 Missense_Mutation p.R452C 0.24 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 3 132185203 132185203 C T DNAJC13 Missense_Mutation p.R677W 0.17 tolerated(0.08) possibly_damaging(0.899) TCGA-19-5956-01 3 132196917 132196917 A G DNAJC13 Missense_Mutation p.Y881C 0.54 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 132277886 132277886 C T ACAD11 Missense_Mutation p.E758K 0.28 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 132319870 132319870 T G ACKR4 Missense_Mutation p.V210G 0.41 deleterious(0) possibly_damaging(0.529) TCGA-19-5956-01 3 132379542 132379542 G A UBA5 Missense_Mutation p.S54N 0.29 deleterious(0) possibly_damaging(0.698) TCGA-19-5956-01 3 132400741 132400741 C A NPHP3 3'UTR 0.23 TCGA-19-5956-01 3 132437847 132437847 C A NPHP3 Missense_Mutation p.D221Y 0.25 deleterious(0.01) benign(0.332) TCGA-19-5956-01 3 133474256 133474256 G A TF Silent p.T184T 0.55 TCGA-19-5956-01 3 133547578 133547578 G T RAB6B 3'UTR 0.10 TCGA-19-5956-01 3 133558462 133558462 C T RAB6B Splice_Site p.X97_splice 0.45 TCGA-19-5956-01 3 133692614 133692614 C T SLCO2A1 Missense_Mutation p.R97H 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 13381519 13381519 G A NUP210 Silent p.G1102G 0.07 TCGA-19-5956-01 3 13395542 13395542 C T NUP210 Silent p.R798R 0.35 TCGA-19-5956-01 3 1339598 1339598 G T CNTN6 Missense_Mutation p.K228N 0.20 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 3 134322857 134322857 C T KY Missense_Mutation p.R517Q 0.47 tolerated(0.2) benign(0.058) TCGA-19-5956-01 3 134885846 134885846 G A EPHB1 Missense_Mutation p.R586Q 0.11 tolerated(0.96) benign(0.018) TCGA-19-5956-01 3 134911522 134911522 C T EPHB1 Missense_Mutation p.R663W 0.40 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 135721067 135721067 T G PPP2R3A Missense_Mutation p.L243V 0.14 deleterious_low_confidence(0) probably_damaging(0.978) TCGA-19-5956-01 3 135806756 135806756 C A PPP2R3A Missense_Mutation p.F940L 0.18 deleterious(0.03) probably_damaging(0.987) TCGA-19-5956-01 3 135870009 135870009 C A MSL2 Missense_Mutation p.D572Y 0.25 deleterious(0) probably_damaging(0.931) TCGA-19-5956-01 3 135870426 135870426 C A MSL2 Missense_Mutation p.A433S 0.21 tolerated(0.82) benign(0.199) TCGA-19-5956-01 3 136068122 136068122 T G STAG1 Missense_Mutation p.N1050T 0.28 tolerated(0.08) benign(0.115) TCGA-19-5956-01 3 136170930 136170930 T C STAG1 Missense_Mutation p.N458S 0.12 tolerated(0.38) benign(0.001) TCGA-19-5956-01 3 136191277 136191277 G A STAG1 Nonsense_Mutation p.R395* 0.34 TCGA-19-5956-01 3 136574181 136574181 G A SLC35G2 Nonsense_Mutation p.W293* 0.44 TCGA-19-5956-01 3 136710782 136710782 A G IL20RB Silent p.E178E 0.18 TCGA-19-5956-01 3 137786539 137786539 C T DZIP1L Silent p.T612T 0.19 TCGA-19-5956-01 3 137849924 137849924 C T A4GNT Missense_Mutation p.E59K 0.21 deleterious(0) benign(0.137) TCGA-19-5956-01 3 137882625 137882625 G T DBR1 Missense_Mutation p.L264I 0.53 deleterious(0) probably_damaging(0.919) TCGA-19-5956-01 3 137991953 137991953 C T ARMC8 Missense_Mutation p.R528C 0.14 deleterious(0) possibly_damaging(0.685) TCGA-19-5956-01 3 137993381 137993381 G A ARMC8 Missense_Mutation p.E560K 0.20 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 3 138219345 138219345 T C CEP70 Missense_Mutation p.D478G 0.27 deleterious(0.01) probably_damaging(0.962) TCGA-19-5956-01 3 138413638 138413638 G A PIK3CB Nonsense_Mutation p.R628* 0.24 TCGA-19-5956-01 3 138763231 138763231 G A PRR23C Silent p.L78L 0.60 TCGA-19-5956-01 3 139237284 139237284 G A RBP1 Silent p.I173I 0.15 TCGA-19-5956-01 3 139297878 139297878 C A NMNAT3 Missense_Mutation p.Q6H 0.17 tolerated(0.05) benign(0.215) TCGA-19-5956-01 3 141162265 141162265 C T ZBTB38 Silent p.S345S 0.21 TCGA-19-5956-01 3 141162364 141162364 A G ZBTB38 Silent p.K378K 0.08 TCGA-19-5956-01 3 141164449 141164449 G T ZBTB38 Missense_Mutation p.K1073N 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 141464110 141464110 C T RNF7 Silent p.I111I 0.52 TCGA-19-5956-01 3 141497560 141497560 C T GRK7 Missense_Mutation p.A145V 0.44 tolerated(0.29) benign(0.012) TCGA-19-5956-01 3 141526641 141526641 A G GRK7 Missense_Mutation p.D402G 0.43 deleterious(0) possibly_damaging(0.555) TCGA-19-5956-01 3 141640898 141640898 A C ATP1B3 Missense_Mutation p.K221T 0.23 deleterious(0.02) possibly_damaging(0.612) TCGA-19-5956-01 3 141644464 141644464 G T ATP1B3 Missense_Mutation p.G254V 0.23 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 141644555 141644555 T C ATP1B3 3'UTR 0.19 TCGA-19-5956-01 3 141644641 141644642 - A ATP1B3 3'UTR 0.22 TCGA-19-5956-01 3 141671479 141671479 G A TFDP2 Missense_Mutation p.A406V 0.24 deleterious_low_confidence(0.03) benign(0.07) TCGA-19-5956-01 3 14199916 14199916 C T XPC Silent p.G489G 0.49 TCGA-19-5956-01 3 142051907 142051907 A C XRN1 Missense_Mutation p.L1322V 0.13 deleterious_low_confidence(0.01) benign(0.285) TCGA-19-5956-01 3 142094679 142094679 G T XRN1 Nonsense_Mutation p.S980* 0.24 TCGA-19-5956-01 3 142137676 142137676 G A XRN1 Silent p.G407G 0.20 TCGA-19-5956-01 3 142274952 142274952 A G ATR Missense_Mutation p.V703A 0.09 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 3 142281600 142281600 C T ATR Missense_Mutation p.R215H 0.10 tolerated_low_confidence(0.19) benign(0) TCGA-19-5956-01 3 142405210 142405210 G A PLS1 Missense_Mutation p.G325R 0.06 deleterious(0.02) probably_damaging(0.965) TCGA-19-5956-01 3 142430829 142430829 G T PLS1 Nonsense_Mutation p.G624* 0.44 TCGA-19-5956-01 3 142567130 142567130 A G PCOLCE2 Missense_Mutation p.M126T 0.45 deleterious(0) possibly_damaging(0.9) TCGA-19-5956-01 3 142606518 142606518 T G PCOLCE2 Missense_Mutation p.K62T 0.19 tolerated(0.59) benign(0.06) TCGA-19-5956-01 3 142680895 142680895 T C PAQR9 3'UTR 0.29 TCGA-19-5956-01 3 142681202 142681202 A G PAQR9 Missense_Mutation p.V326A 0.10 deleterious(0.01) benign(0.017) TCGA-19-5956-01 3 142741903 142741903 G T U2SURP Missense_Mutation p.E409D 0.17 tolerated(0.53) benign(0.004) TCGA-19-5956-01 3 142756162 142756162 C A U2SURP Missense_Mutation p.L736I 0.12 tolerated(1) benign(0.01) TCGA-19-5956-01 3 142840471 142840471 C T CHST2 Silent p.V271V 0.53 TCGA-19-5956-01 3 145788481 145788481 C T PLOD2 3'UTR 0.33 TCGA-19-5956-01 3 145789067 145789067 C T PLOD2 Silent p.T664T 0.10 TCGA-19-5956-01 3 145789184 145789184 T G PLOD2 Missense_Mutation p.E625D 0.42 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 3 145795712 145795712 C A PLOD2 Splice_Site p.X501_splice 0.10 TCGA-19-5956-01 3 145796908 145796908 C A PLOD2 Nonsense_Mutation p.E499* 0.44 TCGA-19-5956-01 3 145803093 145803093 A G PLOD2 Intron 0.10 TCGA-19-5956-01 3 145917752 145917752 C T PLSCR4 Missense_Mutation p.E158K 0.14 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 3 146177773 146177773 C T PLSCR2 Silent p.Q46Q 0.12 TCGA-19-5956-01 3 14862302 14862302 G T FGD5 Missense_Mutation p.R575M 0.27 deleterious(0.04) possibly_damaging(0.789) TCGA-19-5956-01 3 148714147 148714147 G A GYG1 Missense_Mutation p.D68N 0.43 deleterious(0) probably_damaging(0.921) TCGA-19-5956-01 3 148857829 148857829 A G HPS3 Missense_Mutation p.T86A 0.10 deleterious(0.02) benign(0.051) TCGA-19-5956-01 3 149192799 149192799 G T TM4SF4 Missense_Mutation p.E45D 0.10 tolerated(0.19) probably_damaging(0.995) TCGA-19-5956-01 3 150264748 150264748 C T SERP1 5'UTR 0.35 TCGA-19-5956-01 3 150289883 150289883 G A EIF2A Missense_Mutation p.R317H 0.38 deleterious(0.02) benign(0.219) TCGA-19-5956-01 3 15064721 15064721 C T NR2C2 Missense_Mutation p.R210W 0.20 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 15064732 15064732 C T NR2C2 Silent p.F213F 0.49 TCGA-19-5956-01 3 150661680 150661680 G A CLRN1 Intron 0.37 TCGA-19-5956-01 3 150690596 150690596 C T CLRN1 5'Flank 0.50 TCGA-19-5956-01 3 150883235 150883235 A G MED12L Missense_Mutation p.Q429R 0.41 deleterious(0.02) probably_damaging(0.973) TCGA-19-5956-01 3 150908506 150908506 G A MED12L Missense_Mutation p.D586N 0.44 tolerated(0.06) probably_damaging(0.989) TCGA-19-5956-01 3 150916564 150916564 G A GPR171 Nonsense_Mutation p.R204* 0.08 TCGA-19-5956-01 3 150916996 150916996 C T GPR171 Missense_Mutation p.D60N 0.49 deleterious(0.05) probably_damaging(0.917) TCGA-19-5956-01 3 151012161 151012161 G A GPR87 Silent p.I291I 0.22 TCGA-19-5956-01 3 151012619 151012619 G A GPR87 Missense_Mutation p.R139C 0.51 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 151012912 151012912 T C GPR87 Missense_Mutation p.D41G 0.56 tolerated(0.17) benign(0.021) TCGA-19-5956-01 3 151107859 151107859 T C MED12L Silent p.G1813G 0.44 TCGA-19-5956-01 3 151164556 151164556 C T IGSF10 Silent p.R1071R 0.37 TCGA-19-5956-01 3 151501916 151501916 C T RP11-454C18.2 Intron 0.39 TCGA-19-5956-01 3 151598689 151598689 C T SUCNR1 Nonsense_Mutation p.R120* 0.43 TCGA-19-5956-01 3 151599417 151599417 G T SUCNR1 3'UTR 0.26 TCGA-19-5956-01 3 152554275 152554275 G A P2RY1 Missense_Mutation p.G235D 0.24 deleterious(0) benign(0.417) TCGA-19-5956-01 3 153840811 153840811 C A ARHGEF26 Missense_Mutation p.L344M 0.19 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 3 153995402 153995402 C A DHX36 Missense_Mutation p.K891N 0.11 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 154010465 154010465 G A DHX36 Silent p.V563V 0.49 TCGA-19-5956-01 3 154033928 154033928 G A DHX36 Nonsense_Mutation p.R90* 0.44 TCGA-19-5956-01 3 15467811 15467811 G T METTL6 Missense_Mutation p.L70I 0.17 deleterious(0.03) possibly_damaging(0.488) TCGA-19-5956-01 3 154859908 154859908 T G MME Nonsense_Mutation p.Y362* 0.41 TCGA-19-5956-01 3 155199195 155199195 C T PLCH1 Silent p.K1548K 0.20 TCGA-19-5956-01 3 155481371 155481371 T C C3orf33 Missense_Mutation p.N231D 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.658) TCGA-19-5956-01 3 155571532 155571532 C T SLC33A1 Silent p.Q85Q 0.37 TCGA-19-5956-01 3 155860910 155860910 A G KCNAB1 Intron 0.12 TCGA-19-5956-01 3 155861124 155861124 G A KCNAB1 Intron 0.19 TCGA-19-5956-01 3 156422766 156422766 C T TIPARP Missense_Mutation p.P607L 0.56 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 3 156710888 156710888 G A RP11-6F2.3 5'Flank 0.42 TCGA-19-5956-01 3 156763578 156763578 G A LEKR1 3'UTR 0.44 TCGA-19-5956-01 3 15686749 15686749 G A BTD Silent p.R462R 0.07 TCGA-19-5956-01 3 157160564 157160564 G T PTX3 Missense_Mutation p.K314N 0.43 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 3 157271044 157271044 G A C3orf55 5'UTR 0.21 TCGA-19-5956-01 3 15755138 15755138 G A ANKRD28 Silent p.I332I 0.41 TCGA-19-5956-01 3 157840081 157840081 A C RSRC1 Missense_Mutation p.D63A 0.21 deleterious_low_confidence(0.01) unknown(0) TCGA-19-5956-01 3 160151688 160151688 C T SMC4 3'UTR 0.24 TCGA-19-5956-01 3 160156071 160156071 G T TRIM59 Missense_Mutation p.L301I 0.19 tolerated(0.45) benign(0.046) TCGA-19-5956-01 3 160239699 160239699 C A KPNA4 Splice_Site p.X258_splice 0.15 TCGA-19-5956-01 3 160395361 160395361 G A ARL14 Missense_Mutation p.G76D 0.49 tolerated(0.25) benign(0.003) TCGA-19-5956-01 3 160395652 160395652 G A ARL14 Missense_Mutation p.G173E 0.14 tolerated(1) benign(0.006) TCGA-19-5956-01 3 160960425 160960425 G A NMD3 Missense_Mutation p.G334E 0.14 deleterious(0.01) probably_damaging(0.971) TCGA-19-5956-01 3 161063830 161063830 C T SPTSSB 3'UTR 0.50 TCGA-19-5956-01 3 16237328 16237328 G A GALNT15 Missense_Mutation p.D201N 0.43 tolerated(1) benign(0.094) TCGA-19-5956-01 3 16261430 16261430 G T GALNT15 Missense_Mutation p.G513V 0.05 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 3 164764753 164764753 C T SI Missense_Mutation p.R588H 0.29 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 164764801 164764801 C T SI Splice_Site p.X572_splice 0.24 TCGA-19-5956-01 3 164793789 164793789 C A SI Missense_Mutation p.K4N 0.19 deleterious(0) benign(0.358) TCGA-19-5956-01 3 167000253 167000253 T A ZBBX Missense_Mutation p.N676I 0.20 deleterious(0) probably_damaging(0.946) TCGA-19-5956-01 3 167196620 167196620 T G WDR49 3'UTR 0.25 TCGA-19-5956-01 3 167246921 167246921 C T WDR49 Silent p.S423S 0.24 TCGA-19-5956-01 3 167405463 167405463 T G PDCD10 Silent p.I138I 0.33 TCGA-19-5956-01 3 167438014 167438014 C A PDCD10 5'UTR 0.24 TCGA-19-5956-01 3 167747632 167747632 C A GOLIM4 Nonsense_Mutation p.E457* 0.11 TCGA-19-5956-01 3 167750400 167750400 C T GOLIM4 Missense_Mutation p.D362N 0.08 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 3 168819853 168819853 G T MECOM Silent p.T799T 0.23 TCGA-19-5956-01 3 168833311 168833311 G T MECOM Silent p.A660A 0.10 TCGA-19-5956-01 3 168834248 168834248 C T MECOM Missense_Mutation p.G348D 0.53 tolerated(0.07) probably_damaging(1) TCGA-19-5956-01 3 168845690 168845690 C A MECOM Nonsense_Mutation p.E134* 0.18 TCGA-19-5956-01 3 169498450 169498450 G A MYNN Missense_Mutation p.R378H 0.18 deleterious(0.01) probably_damaging(0.993) TCGA-19-5956-01 3 169656275 169656275 G A SAMD7 Missense_Mutation p.R441Q 0.42 tolerated(1) benign(0.001) TCGA-19-5956-01 3 169664415 169664415 A G RP11-379K17.4 RNA 0.09 TCGA-19-5956-01 3 170184765 170184765 A C SLC7A14 3'UTR 0.12 TCGA-19-5956-01 3 170198555 170198555 C T SLC7A14 Missense_Mutation p.V506I 0.19 tolerated(0.27) benign(0) TCGA-19-5956-01 3 170216501 170216501 C A SLC7A14 Silent p.G238G 0.21 TCGA-19-5956-01 3 17051481 17051481 G A PLCL2 Missense_Mutation p.D89N 0.11 deleterious(0.01) probably_damaging(0.928) TCGA-19-5956-01 3 17053231 17053231 G T PLCL2 Missense_Mutation p.R672M 0.26 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 17056231 17056231 G A PLCL2 Missense_Mutation p.G823D 0.24 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 170715887 170715887 G T SLC2A2 Missense_Mutation p.F460L 0.31 tolerated(1) benign(0.006) TCGA-19-5956-01 3 170723185 170723185 C T SLC2A2 Silent p.S284S 0.42 TCGA-19-5956-01 3 171377037 171377037 C T PLD1 Missense_Mutation p.D799N 0.19 deleterious(0.02) benign(0.104) TCGA-19-5956-01 3 172351542 172351542 G A NCEH1 Missense_Mutation p.P357L 0.40 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 3 172353798 172353798 C T NCEH1 Missense_Mutation p.E213K 0.08 tolerated(0.11) benign(0.008) TCGA-19-5956-01 3 172365747 172365747 G A NCEH1 Missense_Mutation p.P131L 0.36 tolerated(0.09) benign(0.004) TCGA-19-5956-01 3 172482115 172482115 T C ECT2 Silent p.N372N 0.24 TCGA-19-5956-01 3 172642080 172642080 C A SPATA16 Missense_Mutation p.R419I 0.11 tolerated(0.11) possibly_damaging(0.506) TCGA-19-5956-01 3 173322747 173322747 A G NLGN1 Missense_Mutation p.N120S 0.07 tolerated(0.32) benign(0.001) TCGA-19-5956-01 3 174577230 174577230 G A NAALADL2 Silent p.T11T 0.14 TCGA-19-5956-01 3 174814892 174814892 G A NAALADL2 Missense_Mutation p.R119H 0.24 tolerated(0.19) benign(0.003) TCGA-19-5956-01 3 178745238 178745238 T G ZMAT3 Missense_Mutation p.N211H 0.07 tolerated(0.22) possibly_damaging(0.758) TCGA-19-5956-01 3 179047478 179047478 C A ZNF639 Missense_Mutation p.S44Y 0.38 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-19-5956-01 3 179292215 179292215 A T ACTL6A Missense_Mutation p.I146F 0.39 tolerated(0.1) possibly_damaging(0.551) TCGA-19-5956-01 3 179319534 179319534 C A MRPL47 Missense_Mutation p.D97Y 0.40 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 179320442 179320442 G T MRPL47 Missense_Mutation p.S81Y 0.19 deleterious(0) possibly_damaging(0.816) TCGA-19-5956-01 3 179525460 179525460 A G PEX5L Splice_Site p.X559_splice 0.23 TCGA-19-5956-01 3 180320921 180320921 C T TTC14 Missense_Mutation p.A99V 0.07 deleterious(0.01) possibly_damaging(0.788) TCGA-19-5956-01 3 180324274 180324274 C T TTC14 Missense_Mutation p.A352V 0.42 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 180378517 180378517 C A CCDC39 Splice_Site p.X120_splice 0.32 TCGA-19-5956-01 3 180667070 180667070 G A FXR1 Missense_Mutation p.R190Q 0.39 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 3 182631698 182631698 T A ATP11B Missense_Mutation p.F1123Y 0.47 tolerated_low_confidence(0.34) benign(0.002) TCGA-19-5956-01 3 182755030 182755030 C T MCCC1 Missense_Mutation p.D524N 0.47 tolerated(0.36) benign(0.004) TCGA-19-5956-01 3 182756918 182756918 C T MCCC1 Missense_Mutation p.E425K 0.23 deleterious(0.01) possibly_damaging(0.871) TCGA-19-5956-01 3 182841840 182841840 C A LAMP3 3'UTR 0.27 TCGA-19-5956-01 3 182853553 182853553 C T LAMP3 Missense_Mutation p.D357N 0.39 tolerated(1) benign(0.001) TCGA-19-5956-01 3 183390123 183390123 C T KLHL24 Missense_Mutation p.R485C 0.43 deleterious(0.01) possibly_damaging(0.836) TCGA-19-5956-01 3 183432978 183432978 G T YEATS2 Nonsense_Mutation p.E10* 0.11 TCGA-19-5956-01 3 183524691 183524691 C T YEATS2 Silent p.C1274C 0.49 TCGA-19-5956-01 3 183660614 183660614 C A ABCC5 Nonsense_Mutation p.E1199* 0.13 TCGA-19-5956-01 3 183665132 183665132 C T ABCC5 Missense_Mutation p.A1132T 0.59 deleterious(0.05) probably_damaging(0.954) TCGA-19-5956-01 3 183822047 183822047 C T HTR3E Silent p.N119N 0.32 TCGA-19-5956-01 3 183861982 183861982 G T EIF2B5 Missense_Mutation p.E655D 0.52 tolerated(0.32) benign(0.001) TCGA-19-5956-01 3 183888587 183888587 G A DVL3 3'UTR 0.61 TCGA-19-5956-01 3 183904621 183904621 C A ABCF3 Missense_Mutation p.L87M 0.51 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 183906573 183906573 G A ABCF3 Silent p.E287E 0.50 TCGA-19-5956-01 3 183967631 183967631 C T ECE2 Missense_Mutation p.A50V 0.17 tolerated_low_confidence(0.14) benign(0.004) TCGA-19-5956-01 3 184023640 184023640 A C PSMD2 Missense_Mutation p.I542L 0.08 tolerated(1) benign(0.001) TCGA-19-5956-01 3 184039151 184039151 C T EIF4G1 Missense_Mutation p.S267L 0.54 tolerated(0.05) probably_damaging(0.96) TCGA-19-5956-01 3 184039536 184039536 C T EIF4G1 Silent p.S395S 0.45 TCGA-19-5956-01 3 18458449 18458449 G A SATB1 Silent p.I111I 0.12 TCGA-19-5956-01 3 184910519 184910519 C A EHHADH Missense_Mutation p.R556M 0.53 tolerated(0.1) benign(0.039) TCGA-19-5956-01 3 185367248 185367248 C T IGF2BP2 Silent p.A512A 0.64 TCGA-19-5956-01 3 186510675 186510675 C T RFC4 Missense_Mutation p.A158T 0.32 tolerated(0.83) possibly_damaging(0.904) TCGA-19-5956-01 3 186954264 186954264 G A MASP1 Silent p.A465A 0.14 TCGA-19-5956-01 3 187086193 187086193 A C RTP4 5'UTR 0.27 TCGA-19-5956-01 3 187444578 187444578 C T BCL6 Missense_Mutation p.R550H 0.10 tolerated(0.54) possibly_damaging(0.572) TCGA-19-5956-01 3 189584583 189584583 C A TP63 Silent p.P293P 0.14 TCGA-19-5956-01 3 189587114 189587114 G A TP63 Silent p.P377P 0.29 TCGA-19-5956-01 3 189700850 189700850 G A LEPREL1 Nonsense_Mutation p.R437* 0.33 TCGA-19-5956-01 3 189704577 189704577 C T LEPREL1 Silent p.P396P 0.27 TCGA-19-5956-01 3 190040048 190040048 G A CLDN1 5'UTR 0.30 TCGA-19-5956-01 3 193051538 193051538 C A ATP13A5 Splice_Site p.X424_splice 0.17 TCGA-19-5956-01 3 193130100 193130100 T G ATP13A4 Missense_Mutation p.E1025D 0.08 tolerated(0.45) benign(0.001) TCGA-19-5956-01 3 193220280 193220280 A G ATP13A4 Splice_Site p.X127_splice 0.65 TCGA-19-5956-01 3 194063253 194063253 G T CPN2 Nonsense_Mutation p.S60* 0.18 TCGA-19-5956-01 3 194331734 194331734 G A TMEM44 Missense_Mutation p.P357S 0.47 deleterious(0) probably_damaging(0.954) TCGA-19-5956-01 3 19479751 19479751 C A KCNH8 Missense_Mutation p.L425M 0.48 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 195390965 195390965 T G SDHAP2 RNA 0.10 TCGA-19-5956-01 3 195516719 195516719 G T MUC4 Missense_Mutation p.L578I 0.30 unknown(0) TCGA-19-5956-01 3 195517684 195517684 G A MUC4 Missense_Mutation p.T256I 0.12 unknown(0) TCGA-19-5956-01 3 195935389 195935389 G T ZDHHC19 Missense_Mutation p.H151N 0.09 tolerated(0.06) benign(0.071) TCGA-19-5956-01 3 195955720 195955720 G A SLC51A Missense_Mutation p.A188T 0.21 deleterious(0.05) benign(0.21) TCGA-19-5956-01 3 196311019 196311019 C T FBXO45 Nonsense_Mutation p.R231* 0.32 TCGA-19-5956-01 3 196386828 196386828 G A NRROS Missense_Mutation p.G105D 0.31 tolerated(0.6) benign(0.006) TCGA-19-5956-01 3 196449342 196449342 G A PIGX Missense_Mutation p.R78H 0.64 deleterious(0.03) probably_damaging(0.923) TCGA-19-5956-01 3 196737602 196737602 C T MFI2 Missense_Mutation p.G433S 0.68 deleterious(0.03) possibly_damaging(0.577) TCGA-19-5956-01 3 196746660 196746660 C T MFI2 Intron 0.26 TCGA-19-5956-01 3 196771384 196771384 G T DLG1 3'UTR 0.38 TCGA-19-5956-01 3 197409417 197409417 G A KIAA0226 Missense_Mutation p.R684W 0.12 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 3 197432007 197432007 C A KIAA0226 Missense_Mutation p.D87Y 0.11 tolerated(0.1) probably_damaging(0.949) TCGA-19-5956-01 3 197665449 197665449 G A IQCG Missense_Mutation p.T162M 0.25 tolerated(0.29) benign(0.029) TCGA-19-5956-01 3 197702952 197702952 G A LMLN Missense_Mutation p.R134H 0.62 deleterious(0.01) probably_damaging(0.988) TCGA-19-5956-01 3 19921080 19921080 G A EFHB 3'UTR 0.29 TCGA-19-5956-01 3 19921251 19921251 C A EFHB Nonsense_Mutation p.E792* 0.12 TCGA-19-5956-01 3 19938236 19938236 C A EFHB Missense_Mutation p.K556N 0.39 deleterious(0) possibly_damaging(0.803) TCGA-19-5956-01 3 20025238 20025238 G T RAB5A Missense_Mutation p.A191S 0.10 tolerated(0.25) benign(0.001) TCGA-19-5956-01 3 20187913 20187913 C A KAT2B Missense_Mutation p.P704T 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 23942323 23942323 G A NKIRAS1 Silent p.I104I 0.14 TCGA-19-5956-01 3 23959952 23959952 G A RPL15 Missense_Mutation p.R65H 0.36 tolerated(0.05) benign(0.022) TCGA-19-5956-01 3 23960694 23960694 C T RPL15 Missense_Mutation p.A106V 0.33 tolerated(1) benign(0.01) TCGA-19-5956-01 3 25661499 25661499 C A TOP2B Missense_Mutation p.A968S 0.36 tolerated(0.19) benign(0.013) TCGA-19-5956-01 3 25781231 25781231 C A NGLY1 Nonsense_Mutation p.E240* 0.24 TCGA-19-5956-01 3 25805657 25805657 C T NGLY1 Missense_Mutation p.S131N 0.40 tolerated(0.2) benign(0.001) TCGA-19-5956-01 3 25832707 25832707 C A OXSM Missense_Mutation p.L66I 0.38 tolerated(0.18) possibly_damaging(0.905) TCGA-19-5956-01 3 27157564 27157564 A G NEK10 Splice_Site p.X1138_splice 0.35 TCGA-19-5956-01 3 27233683 27233683 G A NEK10 Missense_Mutation p.S781L 0.17 deleterious(0) benign(0.204) TCGA-19-5956-01 3 2908587 2908587 C T CNTN4 Silent p.N202N 0.07 TCGA-19-5956-01 3 29985697 29985697 G T RBMS3 Splice_Site p.X351_splice 0.10 TCGA-19-5956-01 3 3133834 3133834 C T IL5RA Intron 0.50 TCGA-19-5956-01 3 3137114 3137114 G A IL5RA Missense_Mutation p.P242S 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 31705619 31705619 C T OSBPL10 Silent p.K734K 0.49 TCGA-19-5956-01 3 31712440 31712440 C T OSBPL10 Missense_Mutation p.V588I 0.35 tolerated(0.13) possibly_damaging(0.474) TCGA-19-5956-01 3 31725552 31725552 C A OSBPL10 Missense_Mutation p.D434Y 0.63 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 3 3178966 3178966 C T TRNT1 Silent p.H57H 0.35 TCGA-19-5956-01 3 3192637 3192637 A C CRBN Missense_Mutation p.F414C 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 3192668 3192668 C T CRBN Missense_Mutation p.A404T 0.38 deleterious(0) possibly_damaging(0.625) TCGA-19-5956-01 3 32529504 32529504 C A CMTM6 Nonsense_Mutation p.G114* 0.26 TCGA-19-5956-01 3 32757745 32757745 C A CNOT10 Missense_Mutation p.S261Y 0.51 deleterious(0.04) benign(0.059) TCGA-19-5956-01 3 32769273 32769273 G A CNOT10 Missense_Mutation p.E436K 0.20 deleterious(0.01) probably_damaging(0.974) TCGA-19-5956-01 3 32860416 32860416 G A TRIM71 Missense_Mutation p.D282N 0.20 tolerated(0.11) benign(0.133) TCGA-19-5956-01 3 33195352 33195352 C A SUSD5 Nonsense_Mutation p.E258* 0.38 TCGA-19-5956-01 3 33255457 33255457 C T SUSD5 Missense_Mutation p.V85M 0.16 deleterious(0.04) probably_damaging(0.995) TCGA-19-5956-01 3 33540097 33540097 G T CLASP2 3'UTR 0.31 TCGA-19-5956-01 3 33614744 33614744 G A CLASP2 Nonsense_Mutation p.R862* 0.45 TCGA-19-5956-01 3 33896737 33896737 G T PDCD6IP Missense_Mutation p.R707I 0.10 deleterious(0) possibly_damaging(0.567) TCGA-19-5956-01 3 35730823 35730823 C A ARPP21 Missense_Mutation p.S144Y 0.28 deleterious(0) possibly_damaging(0.523) TCGA-19-5956-01 3 35833892 35833892 C T ARPP21 Missense_Mutation p.S685F 0.28 deleterious(0.01) benign(0.346) TCGA-19-5956-01 3 36779468 36779468 C T DCLK3 Missense_Mutation p.G228D 0.22 tolerated(1) benign(0) TCGA-19-5956-01 3 36869813 36869813 G A TRANK1 Missense_Mutation p.R2911W 0.57 tolerated_low_confidence(0.15) possibly_damaging(0.724) TCGA-19-5956-01 3 36875328 36875328 C A TRANK1 Missense_Mutation p.A1872S 0.13 deleterious(0.05) probably_damaging(0.984) TCGA-19-5956-01 3 36888723 36888723 G A TRANK1 Nonsense_Mutation p.R1624* 0.26 TCGA-19-5956-01 3 36898504 36898504 G A TRANK1 Silent p.L859L 0.44 TCGA-19-5956-01 3 36899318 36899318 C T TRANK1 Missense_Mutation p.R588Q 0.22 tolerated(0.11) benign(0.301) TCGA-19-5956-01 3 369975 369975 G A CHL1 Missense_Mutation p.R108H 0.29 deleterious(0.01) benign(0.168) TCGA-19-5956-01 3 37058999 37058999 C T MLH1 Missense_Mutation p.R265C 0.56 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 37070322 37070322 C T MLH1 Missense_Mutation p.S486F 0.46 tolerated(0.05) benign(0.003) TCGA-19-5956-01 3 37092193 37092193 C T MLH1 3'UTR 0.51 TCGA-19-5956-01 3 37363336 37363336 A G GOLGA4 Missense_Mutation p.K576E 0.48 probably_damaging(0.999) TCGA-19-5956-01 3 37458935 37458935 G A C3orf35 Missense_Mutation p.G60S 0.22 tolerated_low_confidence(0.07) benign(0.115) TCGA-19-5956-01 3 37476494 37476494 G A C3orf35 Missense_Mutation p.G129E 0.09 deleterious_low_confidence(0.02) probably_damaging(0.969) TCGA-19-5956-01 3 37565019 37565019 C A ITGA9 Missense_Mutation p.S415Y 0.21 deleterious(0.01) benign(0.439) TCGA-19-5956-01 3 37670748 37670748 G T ITGA9 Missense_Mutation p.G587V 0.20 tolerated(0.08) possibly_damaging(0.493) TCGA-19-5956-01 3 37819004 37819004 T C ITGA9 Missense_Mutation p.V888A 0.39 tolerated(0.25) possibly_damaging(0.868) TCGA-19-5956-01 3 37826568 37826568 C T ITGA9 Missense_Mutation p.T963M 0.09 tolerated(0.23) benign(0.012) TCGA-19-5956-01 3 38047438 38047438 C A VILL Missense_Mutation p.F702L 0.24 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 3 38050118 38050118 T G PLCD1 Missense_Mutation p.N599T 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 38104210 38104210 C T DLEC1 Nonsense_Mutation p.R338* 0.25 TCGA-19-5956-01 3 38157992 38157992 G A DLEC1 Missense_Mutation p.R1302Q 0.24 tolerated(0.24) benign(0.004) TCGA-19-5956-01 3 38180425 38180425 G A MYD88 Nonsense_Mutation p.W91* 0.21 TCGA-19-5956-01 3 38182073 38182073 C A MYD88 Missense_Mutation p.P233T 0.08 deleterious_low_confidence(0) benign(0.032) TCGA-19-5956-01 3 38207397 38207397 G A OXSR1 Nonsense_Mutation p.W10* 0.11 TCGA-19-5956-01 3 38271868 38271868 C A OXSR1 Missense_Mutation p.L300I 0.55 tolerated(0.18) benign(0.282) TCGA-19-5956-01 3 38293864 38293864 G A OXSR1 Missense_Mutation p.R497Q 0.21 deleterious(0.04) benign(0.158) TCGA-19-5956-01 3 38318912 38318912 A C SLC22A13 Missense_Mutation p.T538P 0.48 tolerated(0.14) benign(0.002) TCGA-19-5956-01 3 38407160 38407160 G A XYLB Missense_Mutation p.R147H 0.57 tolerated(0.08) benign(0.035) TCGA-19-5956-01 3 38519426 38519426 G A ACVR2B Missense_Mutation p.R112H 0.23 tolerated(0.23) benign(0.003) TCGA-19-5956-01 3 38565515 38565515 G A EXOG Missense_Mutation p.G257S 0.51 tolerated(0.31) benign(0.024) TCGA-19-5956-01 3 38627224 38627224 G T SCN5A Nonsense_Mutation p.C915* 0.53 TCGA-19-5956-01 3 38738860 38738860 G A SCN10A Silent p.L1951L 0.50 TCGA-19-5956-01 3 38764963 38764963 G A SCN10A Silent p.L1104L 0.54 TCGA-19-5956-01 3 38781028 38781028 G T SCN10A Missense_Mutation p.S753Y 0.14 deleterious(0) possibly_damaging(0.857) TCGA-19-5956-01 3 38802706 38802706 G A SCN10A Missense_Mutation p.T287I 0.15 tolerated(0.33) benign(0.009) TCGA-19-5956-01 3 38913022 38913022 G A SCN11A Nonsense_Mutation p.Q1225* 0.22 TCGA-19-5956-01 3 38938582 38938582 G A SCN11A Silent p.G719G 0.51 TCGA-19-5956-01 3 39144971 39144971 G A GORASP1 Missense_Mutation p.S46L 0.49 tolerated(0.17) benign(0.019) TCGA-19-5956-01 3 39166573 39166573 C A TTC21A Silent p.I379I 0.10 TCGA-19-5956-01 3 39166591 39166591 G T TTC21A Missense_Mutation p.E385D 0.13 tolerated(0.43) benign(0.049) TCGA-19-5956-01 3 39175726 39175726 G A TTC21A Silent p.A930A 0.07 TCGA-19-5956-01 3 39176649 39176649 C T TTC21A Silent p.V983V 0.14 TCGA-19-5956-01 3 39180227 39180227 C T TTC21A Missense_Mutation p.P1304L 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 39227239 39227239 C T XIRP1 Missense_Mutation p.R1233H 0.33 tolerated_low_confidence(1) benign(0.001) TCGA-19-5956-01 3 39229170 39229170 G A XIRP1 Silent p.G589G 0.11 TCGA-19-5956-01 3 39307647 39307647 G T CX3CR1 Missense_Mutation p.F150L 0.15 deleterious(0.04) probably_damaging(0.999) TCGA-19-5956-01 3 39323108 39323108 C G CX3CR1 Missense_Mutation p.A27P 0.13 tolerated(0.17) benign(0.067) TCGA-19-5956-01 3 39374075 39374075 G T CCR8 Missense_Mutation p.V85F 0.27 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 39450122 39450122 G A RPSA Silent p.R53R 0.30 TCGA-19-5956-01 3 40464602 40464602 G T ENTPD3 Missense_Mutation p.G365W 0.24 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 41268801 41268801 C A CTNNB1 Missense_Mutation p.L347I 0.22 deleterious(0) probably_damaging(0.929) TCGA-19-5956-01 3 41504745 41504745 C A ULK4 Splice_Site p.X1076_splice 0.26 TCGA-19-5956-01 3 42251427 42251427 C A TRAK1 Missense_Mutation p.S638Y 0.44 deleterious(0.02) benign(0.304) TCGA-19-5956-01 3 42729686 42729686 G A KLHL40 Missense_Mutation p.R402H 0.50 deleterious(0.01) possibly_damaging(0.746) TCGA-19-5956-01 3 42835760 42835760 G A HIGD1A Missense_Mutation p.L10F 0.36 tolerated_low_confidence(0.1) possibly_damaging(0.466) TCGA-19-5956-01 3 42956762 42956762 G T ZNF662 Missense_Mutation p.Q425H 0.12 tolerated(0.55) benign(0.014) TCGA-19-5956-01 3 4354950 4354950 C A SETMAR Missense_Mutation p.F175L 0.29 tolerated_low_confidence(0.08) benign(0.038) TCGA-19-5956-01 3 4355089 4355089 C T SETMAR Missense_Mutation p.L222F 0.37 deleterious_low_confidence(0) probably_damaging(0.996) TCGA-19-5956-01 3 44441857 44441857 G T TCAIM Missense_Mutation p.R299I 0.21 deleterious(0.03) benign(0.358) TCGA-19-5956-01 3 44488853 44488853 G T ZNF445 Silent p.A770A 0.20 TCGA-19-5956-01 3 44489142 44489142 G T ZNF445 Missense_Mutation p.A674D 0.11 tolerated(0.35) possibly_damaging(0.665) TCGA-19-5956-01 3 44492807 44492807 G A ZNF445 Silent p.S199S 0.46 TCGA-19-5956-01 3 44611996 44611996 A G ZKSCAN7 Missense_Mutation p.K465R 0.49 tolerated(0.19) benign(0.059) TCGA-19-5956-01 3 44612000 44612000 C A ZKSCAN7 Silent p.P466P 0.19 TCGA-19-5956-01 3 44612927 44612927 G T ZKSCAN7 3'UTR 0.16 TCGA-19-5956-01 3 44684211 44684211 G T ZNF197 Missense_Mutation p.R530I 0.18 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 3 44684646 44684646 A G ZNF197 Missense_Mutation p.E675G 0.11 deleterious(0) benign(0.219) TCGA-19-5956-01 3 44843445 44843445 G A KIF15 Silent p.E496E 0.24 TCGA-19-5956-01 3 45153769 45153769 C A CDCP1 Missense_Mutation p.S154I 0.18 deleterious(0.02) benign(0.397) TCGA-19-5956-01 3 45153862 45153862 C A CDCP1 Missense_Mutation p.R123I 0.21 deleterious(0) possibly_damaging(0.746) TCGA-19-5956-01 3 45159938 45159938 C A CDCP1 Missense_Mutation p.E86D 0.24 deleterious(0.01) possibly_damaging(0.547) TCGA-19-5956-01 3 45780126 45780126 G A SACM1L Missense_Mutation p.R480Q 0.32 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 45872601 45872601 C A LZTFL1 Missense_Mutation p.E162D 0.26 tolerated(0.21) benign(0.029) TCGA-19-5956-01 3 45943064 45943064 G A CCR9 Missense_Mutation p.V262I 0.42 tolerated(0.07) possibly_damaging(0.532) TCGA-19-5956-01 3 46009881 46009881 C A FYCO1 Silent p.L315L 0.10 TCGA-19-5956-01 3 46009982 46009982 G A FYCO1 Missense_Mutation p.R282C 0.44 tolerated(0.2) benign(0.004) TCGA-19-5956-01 3 46062469 46062469 G A XCR1 Missense_Mutation p.A324V 0.28 tolerated(0.16) benign(0.006) TCGA-19-5956-01 3 46062905 46062905 C T XCR1 Missense_Mutation p.E179K 0.23 tolerated(0.12) benign(0.06) TCGA-19-5956-01 3 46245575 46245575 G A CCR1 Missense_Mutation p.A77V 0.26 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 46399778 46399778 C A CCR2 Missense_Mutation p.L254I 0.10 tolerated(0.35) benign(0.1) TCGA-19-5956-01 3 46563018 46563018 C A LRRC2 Nonsense_Mutation p.E354* 0.36 TCGA-19-5956-01 3 46619364 46619364 C T TDGF1 5'UTR 0.48 TCGA-19-5956-01 3 46755823 46755823 C T PRSS50 Silent p.K213K 0.11 TCGA-19-5956-01 3 46784519 46784519 T C PRSS45 Missense_Mutation p.I113V 0.19 tolerated(0.1) possibly_damaging(0.886) TCGA-19-5956-01 3 47058735 47058735 C T SETD2 Missense_Mutation p.G2515S 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 3 47143033 47143033 C T SETD2 Missense_Mutation p.G1644R 0.43 deleterious(0.03) probably_damaging(0.985) TCGA-19-5956-01 3 4714883 4714883 C A ITPR1 Silent p.I741I 0.47 TCGA-19-5956-01 3 47162426 47162426 C A SETD2 Nonsense_Mutation p.E1234* 0.46 TCGA-19-5956-01 3 47163404 47163404 G T SETD2 Missense_Mutation p.L908M 0.16 tolerated_low_confidence(0.07) benign(0.03) TCGA-19-5956-01 3 47164366 47164366 G T SETD2 Missense_Mutation p.S587Y 0.26 deleterious_low_confidence(0) possibly_damaging(0.665) TCGA-19-5956-01 3 47447855 47447855 A G PTPN23 Missense_Mutation p.D196G 0.47 unknown(0) TCGA-19-5956-01 3 47465496 47465496 C A SCAP Missense_Mutation p.E359D 0.12 deleterious(0.01) probably_damaging(0.989) TCGA-19-5956-01 3 4747873 4747873 T C ITPR1 Silent p.I1545I 0.34 TCGA-19-5956-01 3 47889009 47889009 A T DHX30 Missense_Mutation p.K698M 0.24 tolerated(0.08) possibly_damaging(0.886) TCGA-19-5956-01 3 47957729 47957729 G T MAP4 Missense_Mutation p.L530I 0.25 tolerated(0.33) benign(0.092) TCGA-19-5956-01 3 48040200 48040200 G T MAP4 Missense_Mutation p.L51M 0.21 tolerated(0.25) benign(0.35) TCGA-19-5956-01 3 48207160 48207160 C T CDC25A Missense_Mutation p.R386Q 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 48505205 48505205 G A ATRIP Missense_Mutation p.V603M 0.16 deleterious(0.02) benign(0.117) TCGA-19-5956-01 3 48641693 48641693 G T UQCRC1 Missense_Mutation p.A200D 0.23 deleterious(0) benign(0.297) TCGA-19-5956-01 3 48698770 48698770 A C CELSR3 Missense_Mutation p.F433C 0.21 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 3 48725868 48725868 G A IP6K2 Silent p.G373G 0.15 TCGA-19-5956-01 3 48921516 48921516 G A SLC25A20 Silent p.I80I 0.42 TCGA-19-5956-01 3 48955799 48955799 T C ARIH2OS Missense_Mutation p.I262V 0.17 tolerated_low_confidence(0.49) benign(0.068) TCGA-19-5956-01 3 48955871 48955871 C T ARIH2OS Missense_Mutation p.G238S 0.07 tolerated_low_confidence(0.57) probably_damaging(0.931) TCGA-19-5956-01 3 49064469 49064469 C A IMPDH2 Missense_Mutation p.K181N 0.13 tolerated(0.18) benign(0.128) TCGA-19-5956-01 3 49281866 49281866 T C CCDC36 Missense_Mutation p.V142A 0.20 deleterious(0.01) benign(0.384) TCGA-19-5956-01 3 49293576 49293576 G A CCDC36 Missense_Mutation p.E216K 0.08 deleterious(0.01) probably_damaging(0.946) TCGA-19-5956-01 3 49348111 49348111 G T USP4 Missense_Mutation p.P299H 0.14 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 3 49394963 49394963 C T GPX1 Missense_Mutation p.R157H 0.26 deleterious(0.03) benign(0.133) TCGA-19-5956-01 3 49701953 49701953 C T BSN Silent p.G3902G 0.17 TCGA-19-5956-01 3 49842748 49842748 T C UBA7 Missense_Mutation p.E1011G 0.32 tolerated(0.22) benign(0.075) TCGA-19-5956-01 3 49898696 49898696 G A CAMKV Missense_Mutation p.S160L 0.11 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 50103731 50103731 C T RBM6 Silent p.D913D 0.53 TCGA-19-5956-01 3 50107916 50107916 G A RBM6 Missense_Mutation p.R1016H 0.09 deleterious(0.01) benign(0.05) TCGA-19-5956-01 3 50137513 50137513 T G RBM5 Intron 0.33 TCGA-19-5956-01 3 50144948 50144948 C T RBM5 Silent p.S329S 0.19 TCGA-19-5956-01 3 5023166 5023166 G T BHLHE40 Missense_Mutation p.Q116H 0.06 deleterious(0.03) probably_damaging(0.912) TCGA-19-5956-01 3 50253064 50253064 C T SLC38A3 RNA 0.28 TCGA-19-5956-01 3 50255188 50255188 G T SLC38A3 RNA 0.10 TCGA-19-5956-01 3 50609590 50609590 T G HEMK1 Missense_Mutation p.L122R 0.26 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 3 51273796 51273796 T C DOCK3 Silent p.D646D 0.10 TCGA-19-5956-01 3 51418626 51418626 G A DOCK3 Missense_Mutation p.R1910H 0.52 tolerated_low_confidence(0.08) probably_damaging(0.998) TCGA-19-5956-01 3 51440706 51440706 C T VPRBP Missense_Mutation p.A1017T 0.59 tolerated_low_confidence(0.38) unknown(0) TCGA-19-5956-01 3 51669799 51669799 C T RAD54L2 Missense_Mutation p.R445W 0.50 deleterious(0) benign(0.017) TCGA-19-5956-01 3 51697406 51697406 C T RAD54L2 Silent p.D1458D 0.21 TCGA-19-5956-01 3 51743379 51743379 C T GRM2 Missense_Mutation p.A127V 0.10 tolerated(0.07) possibly_damaging(0.698) TCGA-19-5956-01 3 51746533 51746533 C T GRM2 Silent p.Y165Y 0.47 TCGA-19-5956-01 3 51937052 51937052 C A IQCF1 Missense_Mutation p.Q19H 0.48 deleterious_low_confidence(0.01) possibly_damaging(0.87) TCGA-19-5956-01 3 51979177 51979177 C T PARP3 Silent p.G273G 0.37 TCGA-19-5956-01 3 52003704 52003704 C A ABHD14B Intron 0.21 TCGA-19-5956-01 3 52172259 52172259 C T POC1A Missense_Mutation p.A247T 0.21 tolerated(0.05) benign(0.38) TCGA-19-5956-01 3 52255388 52255388 G A TLR9 Missense_Mutation p.R1136W 0.56 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 3 52416342 52416342 G T DNAH1 Missense_Mutation p.E2604D 0.19 benign(0.06) TCGA-19-5956-01 3 52455008 52455008 C T PHF7 Missense_Mutation p.S168F 0.45 deleterious(0.01) possibly_damaging(0.748) TCGA-19-5956-01 3 5246868 5246868 G T EDEM1 Nonsense_Mutation p.E387* 0.34 TCGA-19-5956-01 3 52474782 52474782 A G SEMA3G Missense_Mutation p.F329S 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 52522460 52522460 C A NISCH Silent p.I984I 0.55 TCGA-19-5956-01 3 52745882 52745882 G A NEK4 Missense_Mutation p.R813C 0.10 tolerated(0.13) benign(0.002) TCGA-19-5956-01 3 52786286 52786286 G A NEK4 Silent p.L344L 0.23 TCGA-19-5956-01 3 52853441 52853441 G T ITIH4 Missense_Mutation p.A682D 0.21 tolerated(0.21) benign(0.05) TCGA-19-5956-01 3 52947584 52947584 A G SFMBT1 Silent p.R510R 0.30 TCGA-19-5956-01 3 53159965 53159965 G A RFT1 Missense_Mutation p.R37C 0.60 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 53219626 53219626 T A PRKCD Missense_Mutation p.S299T 0.10 tolerated(0.5) benign(0.001) TCGA-19-5956-01 3 53221359 53221359 T G PRKCD Missense_Mutation p.F452L 0.42 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 3 53756355 53756355 G A CACNA1D Missense_Mutation p.R527H 0.25 deleterious(0.03) probably_damaging(0.949) TCGA-19-5956-01 3 53769492 53769492 G A CACNA1D Missense_Mutation p.A925T 0.17 deleterious(0) possibly_damaging(0.48) TCGA-19-5956-01 3 53906524 53906524 T G ACTR8 Missense_Mutation p.T397P 0.50 deleterious(0.03) possibly_damaging(0.761) TCGA-19-5956-01 3 53912407 53912407 G A ACTR8 Missense_Mutation p.R128C 0.40 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 3 54596849 54596849 T G CACNA2D3 Silent p.V189V 0.21 TCGA-19-5956-01 3 54919307 54919307 G T CACNA2D3 Splice_Site p.X638_splice 0.23 TCGA-19-5956-01 3 54925412 54925412 C A CACNA2D3 Missense_Mutation p.F727L 0.24 deleterious(0) benign(0.188) TCGA-19-5956-01 3 56468390 56468390 C A ERC2 Nonsense_Mutation p.E216* 0.48 TCGA-19-5956-01 3 56653354 56653354 A G CCDC66 Missense_Mutation p.T812A 0.09 tolerated(0.51) benign(0.002) TCGA-19-5956-01 3 56657368 56657368 C A FAM208A 3'UTR 0.45 TCGA-19-5956-01 3 56658540 56658540 G A FAM208A Missense_Mutation p.L1484F 0.46 tolerated(0.09) benign(0.018) TCGA-19-5956-01 3 57303701 57303701 G T APPL1 Nonsense_Mutation p.E706* 0.11 TCGA-19-5956-01 3 57488123 57488123 G C DNAH12 Missense_Mutation p.H390Q 0.17 tolerated(0.69) benign(0) TCGA-19-5956-01 3 57494905 57494905 C T DNAH12 Silent p.S168S 0.41 TCGA-19-5956-01 3 57542756 57542756 C T PDE12 Missense_Mutation p.S217F 0.23 tolerated(0.07) benign(0.129) TCGA-19-5956-01 3 57545274 57545274 T A PDE12 Intron 0.20 TCGA-19-5956-01 3 57561397 57561397 G T ARF4 Missense_Mutation p.L112M 0.17 tolerated_low_confidence(0.13) benign(0.004) TCGA-19-5956-01 3 57627403 57627403 C T DENND6A Missense_Mutation p.R370Q 0.47 deleterious(0) possibly_damaging(0.714) TCGA-19-5956-01 3 57658008 57658008 A G DENND6A Silent p.Y98Y 0.23 TCGA-19-5956-01 3 58111328 58111328 A G FLNB Missense_Mutation p.T1307A 0.25 tolerated(0.83) benign(0.278) TCGA-19-5956-01 3 58252918 58252918 A G ABHD6 Missense_Mutation p.Y41C 0.48 deleterious(0) benign(0.445) TCGA-19-5956-01 3 58486735 58486735 G A KCTD6 Silent p.L30L 0.21 TCGA-19-5956-01 3 58817525 58817525 G T C3orf67 Missense_Mutation p.L437M 0.22 deleterious(0) probably_damaging(0.926) TCGA-19-5956-01 3 62319175 62319175 C A C3orf14 3'UTR 0.16 TCGA-19-5956-01 3 62464016 62464016 C T CADPS Nonsense_Mutation p.W1083* 0.22 TCGA-19-5956-01 3 62631409 62631409 G T CADPS Missense_Mutation p.A438D 0.18 deleterious(0) possibly_damaging(0.665) TCGA-19-5956-01 3 63975975 63975975 C T ATXN7 Silent p.G495G 0.16 TCGA-19-5956-01 3 63981753 63981753 C A ATXN7 Missense_Mutation p.S752Y 0.21 deleterious(0.02) probably_damaging(0.926) TCGA-19-5956-01 3 63999269 63999269 C T PSMD6 Missense_Mutation p.E281K 0.42 tolerated(0.51) benign(0.005) TCGA-19-5956-01 3 64601027 64601027 A G ADAMTS9 Silent p.C1053C 0.48 TCGA-19-5956-01 3 64617590 64617590 G A ADAMTS9 Silent p.C729C 0.53 TCGA-19-5956-01 3 64636718 64636718 G A ADAMTS9 Nonsense_Mutation p.R480* 0.23 TCGA-19-5956-01 3 64640053 64640053 G A ADAMTS9 Missense_Mutation p.T431M 0.44 deleterious(0) probably_damaging(1) TCGA-19-5956-01 3 64673319 64673319 G A ADAMTS9 Silent p.S5S 0.50 TCGA-19-5956-01 3 65341906 65341906 G T MAGI1 3'Flank 0.46 TCGA-19-5956-01 3 65416481 65416481 C T MAGI1 Missense_Mutation p.R480H 0.11 deleterious(0.02) possibly_damaging(0.712) TCGA-19-5956-01 3 69151085 69151085 G A ARL6IP5 Missense_Mutation p.R91H 0.53 tolerated(0.06) possibly_damaging(0.836) TCGA-19-5956-01 3 69168716 69168716 C A LMOD3 Nonsense_Mutation p.E264* 0.41 TCGA-19-5956-01 3 71026995 71026995 G A FOXP1 Silent p.N446N 0.25 TCGA-19-5956-01 3 71247379 71247379 C T FOXP1 Missense_Mutation p.A52T 0.12 tolerated_low_confidence(0.24) benign(0.281) TCGA-19-5956-01 3 72428561 72428561 G T RYBP Missense_Mutation p.S148Y 0.16 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 3 72799749 72799749 C A SHQ1 Missense_Mutation p.D474Y 0.11 deleterious_low_confidence(0.04) possibly_damaging(0.798) TCGA-19-5956-01 3 73432532 73432532 G A PDZRN3 Missense_Mutation p.S1062L 0.45 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 3 77147311 77147311 C T ROBO2 Nonsense_Mutation p.R86* 0.44 TCGA-19-5956-01 3 78988065 78988065 C T ROBO1 Missense_Mutation p.R62H 0.42 deleterious(0.02) possibly_damaging(0.732) TCGA-19-5956-01 3 81720085 81720085 C T GBE1 Silent p.S111S 0.12 TCGA-19-5956-01 3 8590451 8590451 C T LMCD1 Silent p.G195G 0.09 TCGA-19-5956-01 3 8675473 8675473 G A SSUH2 Missense_Mutation p.A73V 0.49 tolerated(0.98) benign(0) TCGA-19-5956-01 3 87310439 87310439 G A POU1F1 Nonsense_Mutation p.R243* 0.19 TCGA-19-5956-01 3 8775519 8775519 C T CAV3 5'UTR 0.21 TCGA-19-5956-01 3 88040299 88040299 A C HTR1F Missense_Mutation p.K134Q 0.40 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 3 88040353 88040354 - T HTR1F Frame_Shift_Ins p.I154Yfs*14 0.36 TCGA-19-5956-01 3 88040836 88040836 G T HTR1F Nonsense_Mutation p.E313* 0.13 TCGA-19-5956-01 3 88205800 88205800 G T C3orf38 3'UTR 0.10 TCGA-19-5956-01 3 89391088 89391088 G A EPHA3 Missense_Mutation p.R385Q 0.07 tolerated(0.5) possibly_damaging(0.579) TCGA-19-5956-01 3 9055434 9055434 C T SRGAP3 Missense_Mutation p.A636T 0.08 tolerated(0.24) benign(0.093) TCGA-19-5956-01 3 9146472 9146472 C A SRGAP3 Missense_Mutation p.Q105H 0.10 tolerated(0.15) probably_damaging(0.997) TCGA-19-5956-01 3 93755471 93755471 C A ARL13B Missense_Mutation p.H188N 0.42 tolerated(0.57) benign(0.004) TCGA-19-5956-01 3 9747687 9747687 C T CPNE9 Missense_Mutation p.A106V 0.12 tolerated(1) benign(0.007) TCGA-19-5956-01 3 97595935 97595935 C A CRYBG3 Missense_Mutation p.S18Y 0.25 tolerated_low_confidence(0.12) benign(0.006) TCGA-19-5956-01 3 97596407 97596407 T C CRYBG3 Silent p.V175V 0.12 TCGA-19-5956-01 3 9776294 9776294 G A BRPF1 Missense_Mutation p.R157H 0.42 deleterious(0) possibly_damaging(0.754) TCGA-19-5956-01 3 97806053 97806053 G T OR5AC2 Nonsense_Mutation p.E13* 0.42 TCGA-19-5956-01 3 9785970 9785970 T C BRPF1 Missense_Mutation p.F900L 0.09 deleterious(0.03) probably_damaging(0.979) TCGA-19-5956-01 3 97887604 97887604 C T OR5H15 Missense_Mutation p.P21S 0.09 tolerated(0.06) benign(0.005) TCGA-19-5956-01 3 97984026 97984026 T C OR5H6 Silent p.L300L 0.07 TCGA-19-5956-01 3 98001786 98001786 C A OR5H2 Missense_Mutation p.L19I 0.25 deleterious(0.01) possibly_damaging(0.45) TCGA-19-5956-01 3 98002324 98002324 C A OR5H2 Missense_Mutation p.S198Y 0.11 tolerated(0.65) benign(0.02) TCGA-19-5956-01 3 98002641 98002641 G T OR5H2 Missense_Mutation p.D304Y 0.55 deleterious(0.01) benign(0.014) TCGA-19-5956-01 3 98073007 98073007 C A OR5K4 Missense_Mutation p.L104I 0.44 deleterious(0.03) benign(0.175) TCGA-19-5956-01 3 9807678 9807678 C T OGG1 Silent p.D378D 0.24 TCGA-19-5956-01 3 98188534 98188534 C T OR5K1 Silent p.T38T 0.47 TCGA-19-5956-01 3 98217148 98217148 C A OR5K2 Silent p.V208V 0.42 TCGA-19-5956-01 3 98489749 98489749 G T ST3GAL6 Missense_Mutation p.R39I 0.17 deleterious(0.01) possibly_damaging(0.723) TCGA-19-5956-01 3 98503862 98503862 G A ST3GAL6 Missense_Mutation p.D137N 0.39 tolerated(0.76) probably_damaging(1) TCGA-19-5956-01 3 99568719 99568719 C A FILIP1L Missense_Mutation p.D601Y 0.10 deleterious(0.01) probably_damaging(0.91) TCGA-19-5956-01 3 99649733 99649733 C T FILIP1L Silent p.S44S 0.56 TCGA-19-5956-01 3 9987869 9987869 T G PRRT3 3'UTR 0.42 TCGA-19-5956-01 4 100129930 100129930 G T ADH6 Nonsense_Mutation p.C241* 0.17 TCGA-19-5956-01 4 100201359 100201359 G T ADH1A Silent p.L302L 0.13 TCGA-19-5956-01 4 100205875 100205875 G A ADH1A Silent p.N115N 0.29 TCGA-19-5956-01 4 10027541 10027541 G A SLC2A9 5'Flank 0.11 TCGA-19-5956-01 4 100349138 100349138 C T ADH7 Missense_Mutation p.G139D 0.10 tolerated(0.28) benign(0.255) TCGA-19-5956-01 4 100356481 100356481 G A ADH7 5'Flank 0.38 TCGA-19-5956-01 4 100434162 100434162 G A C4orf17 5'UTR 0.46 TCGA-19-5956-01 4 100463080 100463080 G A C4orf17 Silent p.K298K 0.29 TCGA-19-5956-01 4 100463082 100463082 C T C4orf17 Missense_Mutation p.P299L 0.16 tolerated(0.08) benign(0.14) TCGA-19-5956-01 4 100480374 100480374 G T TRMT10A Missense_Mutation p.S41Y 0.18 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 100512429 100512429 C T MTTP Missense_Mutation p.A180V 0.57 tolerated(0.58) benign(0.01) TCGA-19-5956-01 4 100534132 100534132 G T MTTP Missense_Mutation p.E684D 0.36 tolerated(0.05) benign(0.145) TCGA-19-5956-01 4 100542334 100542334 C A MTTP Missense_Mutation p.S820Y 0.10 deleterious(0) benign(0.091) TCGA-19-5956-01 4 100787732 100787732 T C DAPP1 Intron 0.14 TCGA-19-5956-01 4 100867638 100867638 G T DNAJB14 Missense_Mutation p.L31M 0.23 deleterious(0) possibly_damaging(0.844) TCGA-19-5956-01 4 102014938 102014938 G T PPP3CA Missense_Mutation p.F259L 0.10 deleterious(0.03) possibly_damaging(0.677) TCGA-19-5956-01 4 103188829 103188829 C A SLC39A8 Missense_Mutation p.D351Y 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 103498185 103498185 G A NFKB1 Missense_Mutation p.R187Q 0.07 tolerated(0.06) benign(0.124) TCGA-19-5956-01 4 103505865 103505865 G T NFKB1 Missense_Mutation p.K318N 0.19 tolerated(0.06) possibly_damaging(0.846) TCGA-19-5956-01 4 103514630 103514630 C T NFKB1 Missense_Mutation p.S372L 0.18 tolerated(0.22) benign(0.358) TCGA-19-5956-01 4 103730839 103730839 A G UBE2D3 Missense_Mutation p.I39T 0.43 deleterious_low_confidence(0) probably_damaging(0.98) TCGA-19-5956-01 4 103806458 103806458 G T CISD2 Missense_Mutation p.K63N 0.17 tolerated(0.1) possibly_damaging(0.566) TCGA-19-5956-01 4 103822449 103822449 G A SLC9B1 Missense_Mutation p.S458F 0.05 deleterious(0.05) benign(0.14) TCGA-19-5956-01 4 103831675 103831675 C T SLC9B1 Missense_Mutation p.R336H 0.38 tolerated(0.49) benign(0.013) TCGA-19-5956-01 4 103964458 103964458 C T SLC9B2 Missense_Mutation p.E381K 0.47 tolerated(0.22) benign(0.033) TCGA-19-5956-01 4 104044147 104044147 G A CENPE Silent p.L2342L 0.07 TCGA-19-5956-01 4 104079944 104079944 A C CENPE Missense_Mutation p.S901A 0.32 benign(0.008) TCGA-19-5956-01 4 104082272 104082272 G A CENPE Missense_Mutation p.T701I 0.36 possibly_damaging(0.839) TCGA-19-5956-01 4 10445083 10445083 G A ZNF518B Missense_Mutation p.T957I 0.52 tolerated(0.46) benign(0.368) TCGA-19-5956-01 4 10446284 10446284 T G ZNF518B Missense_Mutation p.S557R 0.50 tolerated(0.22) benign(0) TCGA-19-5956-01 4 10447300 10447300 G A ZNF518B Missense_Mutation p.A218V 0.45 tolerated(0.21) benign(0.015) TCGA-19-5956-01 4 10567680 10567680 G A CLNK Missense_Mutation p.S82L 0.28 tolerated(0.08) benign(0.064) TCGA-19-5956-01 4 106157028 106157028 C T TET2 Silent p.S643S 0.13 TCGA-19-5956-01 4 106367650 106367650 T C PPA2 Missense_Mutation p.K111E 0.20 tolerated(0.69) benign(0.004) TCGA-19-5956-01 4 106534625 106534625 G T ARHGEF38 Nonsense_Mutation p.E157* 0.20 TCGA-19-5956-01 4 106616749 106616749 G A INTS12 Missense_Mutation p.P78L 0.23 tolerated(0.08) benign(0.009) TCGA-19-5956-01 4 107171628 107171628 T G TBCK Missense_Mutation p.K202T 0.09 tolerated(0.35) benign(0.042) TCGA-19-5956-01 4 108535511 108535511 C T PAPSS1 Missense_Mutation p.R590Q 0.08 tolerated(0.09) possibly_damaging(0.593) TCGA-19-5956-01 4 108866191 108866191 C T CYP2U1 Missense_Mutation p.R186C 0.06 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 108866394 108866394 T C CYP2U1 Silent p.G253G 0.34 TCGA-19-5956-01 4 108866639 108866639 G A CYP2U1 Missense_Mutation p.S335N 0.60 deleterious(0.02) benign(0.074) TCGA-19-5956-01 4 108940745 108940745 G A HADH Missense_Mutation p.A157T 0.39 deleterious(0) possibly_damaging(0.661) TCGA-19-5956-01 4 108955650 108955650 C A HADH 3'UTR 0.35 TCGA-19-5956-01 4 109681444 109681444 G A ETNPPL Silent p.F25F 0.10 TCGA-19-5956-01 4 110635586 110635586 C T PLA2G12A Missense_Mutation p.D173N 0.59 tolerated(1) probably_damaging(0.957) TCGA-19-5956-01 4 110667572 110667572 A G CFI Missense_Mutation p.V412A 0.35 tolerated(0.15) benign(0.247) TCGA-19-5956-01 4 110687935 110687935 C A CFI Missense_Mutation p.A35S 0.14 tolerated(1) benign(0.004) TCGA-19-5956-01 4 110791661 110791661 G A LRIT3 Missense_Mutation p.V586M 0.61 deleterious(0.03) probably_damaging(0.973) TCGA-19-5956-01 4 110897363 110897363 A G EGF Silent p.K675K 0.47 TCGA-19-5956-01 4 110920861 110920861 G A EGF Missense_Mutation p.R1011Q 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 111026739 111026739 G A ELOVL6 Silent p.F45F 0.38 TCGA-19-5956-01 4 111398147 111398147 G A ENPEP Missense_Mutation p.A193T 0.20 tolerated(0.52) benign(0.046) TCGA-19-5956-01 4 111409768 111409768 A C ENPEP Missense_Mutation p.K239T 0.21 deleterious(0.03) probably_damaging(0.992) TCGA-19-5956-01 4 113107978 113107978 C T C4orf32 Nonsense_Mutation p.R95* 0.16 TCGA-19-5956-01 4 113189329 113189329 C T AP1AR Missense_Mutation p.R225C 0.15 deleterious(0) benign(0.024) TCGA-19-5956-01 4 113298841 113298841 G A ALPK1 5'UTR 0.07 TCGA-19-5956-01 4 113506739 113506739 T C C4orf21 Silent p.Q1353Q 0.18 TCGA-19-5956-01 4 113510922 113510922 C T C4orf21 Missense_Mutation p.A1029T 0.18 tolerated(0.24) benign(0.039) TCGA-19-5956-01 4 113568226 113568226 C T LARP7 Missense_Mutation p.P204S 0.35 deleterious(0.03) probably_damaging(0.939) TCGA-19-5956-01 4 11401122 11401122 G A HS3ST1 Missense_Mutation p.P170S 0.44 tolerated(0.25) benign(0.021) TCGA-19-5956-01 4 11401256 11401256 G A HS3ST1 Missense_Mutation p.T125M 0.32 deleterious(0.02) probably_damaging(0.997) TCGA-19-5956-01 4 114254346 114254346 C A ANK2 Missense_Mutation p.L1121I 0.13 probably_damaging(0.966) TCGA-19-5956-01 4 114257193 114257193 C T ANK2 Missense_Mutation p.R1191W 0.20 probably_damaging(0.999) TCGA-19-5956-01 4 114279961 114279961 C A ANK2 Missense_Mutation p.S3396Y 0.41 possibly_damaging(0.694) TCGA-19-5956-01 4 114381320 114381320 C T CAMK2D Missense_Mutation p.R396Q 0.16 tolerated_low_confidence(0.08) benign(0.216) TCGA-19-5956-01 4 115597146 115597146 G A UGT8 Missense_Mutation p.R443Q 0.31 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 4 115760698 115760698 G A NDST4 Nonsense_Mutation p.R708* 0.58 TCGA-19-5956-01 4 118975613 118975613 C T NDST3 Missense_Mutation p.S183F 0.15 tolerated(1) benign(0.034) TCGA-19-5956-01 4 118975655 118975655 C T NDST3 Missense_Mutation p.P197L 0.05 deleterious(0) possibly_damaging(0.447) TCGA-19-5956-01 4 119059379 119059379 C T NDST3 Silent p.I465I 0.10 TCGA-19-5956-01 4 119204202 119204202 C A PRSS12 Nonsense_Mutation p.E702* 0.18 TCGA-19-5956-01 4 119718941 119718941 C T SEC24D Missense_Mutation p.R313H 0.29 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 119736726 119736726 G T SEC24D Missense_Mutation p.P185T 0.17 deleterious(0.03) benign(0.092) TCGA-19-5956-01 4 119952033 119952033 G A SYNPO2 Silent p.E701E 0.51 TCGA-19-5956-01 4 119978661 119978661 G A SYNPO2 Missense_Mutation p.D1120N 0.48 tolerated(0.42) benign(0.018) TCGA-19-5956-01 4 119978665 119978665 G A SYNPO2 Missense_Mutation p.G1121E 0.16 tolerated(0.56) benign(0.005) TCGA-19-5956-01 4 119979079 119979079 G A SYNPO2 Missense_Mutation p.R1259H 0.13 tolerated(0.14) benign(0.087) TCGA-19-5956-01 4 120166517 120166517 G A USP53 Missense_Mutation p.R57Q 0.17 deleterious(0.01) probably_damaging(0.994) TCGA-19-5956-01 4 120440240 120440240 C T PDE5A Missense_Mutation p.D654N 0.24 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 4 120460115 120460115 C T PDE5A Silent p.A544A 0.08 TCGA-19-5956-01 4 120987853 120987853 G T MAD2L1 Missense_Mutation p.L13M 0.28 deleterious(0.02) probably_damaging(0.982) TCGA-19-5956-01 4 121631473 121631473 A C PRDM5 Missense_Mutation p.F573L 0.31 tolerated(0.09) benign(0.02) TCGA-19-5956-01 4 121957425 121957425 G T NDNF Missense_Mutation p.F567L 0.07 tolerated(0.65) benign(0.002) TCGA-19-5956-01 4 122071362 122071362 C A TNIP3 Missense_Mutation p.A246S 0.14 deleterious(0) possibly_damaging(0.671) TCGA-19-5956-01 4 122075759 122075759 G A TNIP3 Missense_Mutation p.L224F 0.32 tolerated(0.09) probably_damaging(0.999) TCGA-19-5956-01 4 122740724 122740724 C A CCNA2 Nonsense_Mutation p.E269* 0.33 TCGA-19-5956-01 4 122780317 122780317 C A BBS7 Missense_Mutation p.D120Y 0.18 deleterious(0) possibly_damaging(0.908) TCGA-19-5956-01 4 122824055 122824055 T C TRPC3 Silent p.R805R 0.59 TCGA-19-5956-01 4 123156039 123156039 C A KIAA1109 Missense_Mutation p.F1145L 0.09 possibly_damaging(0.704) TCGA-19-5956-01 4 1232004 1232004 G A CTBP1 Silent p.C54C 0.42 TCGA-19-5956-01 4 123255617 123255617 C A KIAA1109 Missense_Mutation p.S3922Y 0.16 benign(0.225) TCGA-19-5956-01 4 123260537 123260537 C A KIAA1109 Missense_Mutation p.T4109N 0.40 benign(0) TCGA-19-5956-01 4 123664678 123664678 T G BBS12 Missense_Mutation p.F544C 0.10 deleterious(0) probably_damaging(0.964) TCGA-19-5956-01 4 123664704 123664704 C A BBS12 Missense_Mutation p.L553I 0.09 tolerated(0.08) benign(0.195) TCGA-19-5956-01 4 123748422 123748422 G A FGF2 Silent p.R164R 0.18 TCGA-19-5956-01 4 123814475 123814475 C A FGF2 3'UTR 0.16 TCGA-19-5956-01 4 123949485 123949485 T C SPATA5 Missense_Mutation p.C672R 0.06 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 125590607 125590607 A G ANKRD50 Silent p.N1275N 0.22 TCGA-19-5956-01 4 125593331 125593331 C T ANKRD50 Silent p.T367T 0.35 TCGA-19-5956-01 4 126241980 126241980 G T FAT4 Missense_Mutation p.D1472Y 0.06 probably_damaging(0.997) TCGA-19-5956-01 4 126336687 126336687 G A FAT4 Missense_Mutation p.R2190H 0.18 benign(0.262) TCGA-19-5956-01 4 126369667 126369667 C A FAT4 Missense_Mutation p.S2499Y 0.33 possibly_damaging(0.797) TCGA-19-5956-01 4 126369674 126369674 G T FAT4 Silent p.L2501L 0.05 TCGA-19-5956-01 4 126370068 126370069 - A FAT4 Frame_Shift_Ins p.Y2635Ifs*22 0.22 TCGA-19-5956-01 4 126371205 126371205 G T FAT4 Missense_Mutation p.D3012Y 0.55 probably_damaging(1) TCGA-19-5956-01 4 126408720 126408720 G T FAT4 Missense_Mutation p.G4346V 0.15 possibly_damaging(0.799) TCGA-19-5956-01 4 126411520 126411520 G A FAT4 Missense_Mutation p.V4515I 0.09 benign(0.003) TCGA-19-5956-01 4 126411726 126411726 C A FAT4 Silent p.I4583I 0.09 TCGA-19-5956-01 4 128629748 128629748 T G INTU Missense_Mutation p.L765R 0.41 deleterious(0) possibly_damaging(0.908) TCGA-19-5956-01 4 128629773 128629773 C A INTU Missense_Mutation p.N773K 0.29 tolerated(0.23) benign(0.149) TCGA-19-5956-01 4 128806978 128806978 G T PLK4 Missense_Mutation p.K151N 0.06 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 128812325 128812325 C A PLK4 Missense_Mutation p.L637I 0.17 deleterious(0.04) probably_damaging(0.997) TCGA-19-5956-01 4 128865139 128865139 C T MFSD8 Silent p.P69P 0.40 TCGA-19-5956-01 4 128865141 128865141 G A MFSD8 Missense_Mutation p.P69S 0.56 tolerated(0.6) benign(0.01) TCGA-19-5956-01 4 129028495 129028495 G A LARP1B Intron 0.43 TCGA-19-5956-01 4 13578597 13578597 C A BOD1L1 Missense_Mutation p.R2968I 0.20 probably_damaging(0.999) TCGA-19-5956-01 4 1359954 1359954 G T UVSSA Intron 0.22 TCGA-19-5956-01 4 13600767 13600767 G T BOD1L1 Missense_Mutation p.P2586H 0.42 possibly_damaging(0.497) TCGA-19-5956-01 4 13600979 13600979 C T BOD1L1 Silent p.T2515T 0.25 TCGA-19-5956-01 4 13602155 13602155 G A BOD1L1 Silent p.V2123V 0.19 TCGA-19-5956-01 4 138452099 138452099 C T PCDH18 Missense_Mutation p.V382I 0.15 tolerated(0.06) probably_damaging(0.999) TCGA-19-5956-01 4 139153532 139153532 C A SLC7A11 Missense_Mutation p.A137S 0.32 tolerated(0.18) possibly_damaging(0.626) TCGA-19-5956-01 4 139988857 139988857 C A ELF2 Missense_Mutation p.K186N 0.15 deleterious(0) probably_damaging(0.96) TCGA-19-5956-01 4 139994674 139994674 T C ELF2 Missense_Mutation p.I96V 0.44 deleterious(0.01) possibly_damaging(0.907) TCGA-19-5956-01 4 140196537 140196537 C T MGARP Missense_Mutation p.R31H 0.17 tolerated(0.08) benign(0.042) TCGA-19-5956-01 4 140255353 140255353 G T NAA15 Missense_Mutation p.R27I 0.09 deleterious(0) possibly_damaging(0.616) TCGA-19-5956-01 4 140264023 140264023 C T NAA15 Missense_Mutation p.A149V 0.18 tolerated(0.16) possibly_damaging(0.896) TCGA-19-5956-01 4 141560497 141560497 G A TBC1D9 Missense_Mutation p.T808M 0.59 deleterious(0.04) possibly_damaging(0.693) TCGA-19-5956-01 4 141583243 141583243 G A TBC1D9 Missense_Mutation p.A536V 0.15 tolerated(0.35) possibly_damaging(0.458) TCGA-19-5956-01 4 142152608 142152608 G A ZNF330 Missense_Mutation p.R180Q 0.18 deleterious(0) probably_damaging(0.915) TCGA-19-5956-01 4 143094807 143094807 G T INPP4B Missense_Mutation p.S446Y 0.57 deleterious(0) probably_damaging(0.956) TCGA-19-5956-01 4 143235911 143235911 C T INPP4B Missense_Mutation p.R126Q 0.16 tolerated(0.18) benign(0.017) TCGA-19-5956-01 4 144135393 144135393 C T USP38 Missense_Mutation p.T755M 0.15 tolerated(0.14) benign(0.042) TCGA-19-5956-01 4 144135515 144135515 A G USP38 Missense_Mutation p.R796G 0.14 tolerated(0.28) benign(0.063) TCGA-19-5956-01 4 144354645 144354645 T C GAB1 Silent p.D123D 0.10 TCGA-19-5956-01 4 144359252 144359252 A G GAB1 Missense_Mutation p.M232V 0.61 tolerated(1) benign(0) TCGA-19-5956-01 4 145629343 145629343 G A HHIP Missense_Mutation p.R394Q 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 146048685 146048685 A G ABCE1 Missense_Mutation p.E587G 0.08 deleterious(0) possibly_damaging(0.484) TCGA-19-5956-01 4 146059130 146059130 C A OTUD4 Missense_Mutation p.D868Y 0.11 deleterious(0.03) benign(0.002) TCGA-19-5956-01 4 146092840 146092840 C T OTUD4 Silent p.K27K 0.34 TCGA-19-5956-01 4 146435696 146435696 C A SMAD1 5'UTR 0.24 TCGA-19-5956-01 4 146435802 146435802 G A SMAD1 Missense_Mutation p.A13T 0.55 tolerated(0.17) benign(0.417) TCGA-19-5956-01 4 146435834 146435834 C T SMAD1 Silent p.G23G 0.17 TCGA-19-5956-01 4 146467918 146467918 A G SMAD1 Missense_Mutation p.N280S 0.40 tolerated(0.06) benign(0.396) TCGA-19-5956-01 4 146791543 146791543 C T ZNF827 Missense_Mutation p.R612Q 0.14 tolerated(0.59) benign(0.003) TCGA-19-5956-01 4 146823963 146823963 C T ZNF827 Missense_Mutation p.V150I 0.11 tolerated_low_confidence(0.08) benign(0.001) TCGA-19-5956-01 4 148589724 148589724 C T PRMT10 Missense_Mutation p.A307T 0.15 deleterious(0.01) possibly_damaging(0.493) TCGA-19-5956-01 4 148876466 148876466 G T ARHGAP10 Splice_Site p.X464_splice 0.34 TCGA-19-5956-01 4 148886248 148886248 G T ARHGAP10 Missense_Mutation p.E508D 0.19 deleterious(0.05) possibly_damaging(0.891) TCGA-19-5956-01 4 149357454 149357454 A G NR3C2 Missense_Mutation p.C187R 0.11 tolerated_low_confidence(0.07) possibly_damaging(0.831) TCGA-19-5956-01 4 151153838 151153838 G A DCLK2 Missense_Mutation p.G492E 0.24 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 4 151505077 151505077 G A MAB21L2 Missense_Mutation p.R299Q 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 151505229 151505229 C A MAB21L2 Missense_Mutation p.L350I 0.15 tolerated(0.46) benign(0.016) TCGA-19-5956-01 4 151770705 151770705 C T LRBA Missense_Mutation p.D1343N 0.10 deleterious(0.03) probably_damaging(0.995) TCGA-19-5956-01 4 152624995 152624995 G A PET112 Intron 0.54 TCGA-19-5956-01 4 153244077 153244077 C A FBXW7 Nonsense_Mutation p.E694* 0.23 TCGA-19-5956-01 4 153691871 153691871 G A TIGD4 Nonsense_Mutation p.R96* 0.59 TCGA-19-5956-01 4 153864540 153864540 C T FHDC1 Nonsense_Mutation p.R111* 0.34 TCGA-19-5956-01 4 153896883 153896883 G T FHDC1 Nonsense_Mutation p.E814* 0.09 TCGA-19-5956-01 4 154236704 154236704 G T TRIM2 Missense_Mutation p.K526N 0.08 deleterious(0.03) possibly_damaging(0.735) TCGA-19-5956-01 4 15444417 15444417 A G C1QTNF7 Silent p.E295E 0.10 TCGA-19-5956-01 4 15444497 15444497 G A C1QTNF7 3'UTR 0.25 TCGA-19-5956-01 4 154512207 154512207 G T KIAA0922 Missense_Mutation p.R558M 0.34 deleterious(0.03) probably_damaging(0.947) TCGA-19-5956-01 4 154625411 154625411 T C TLR2 Missense_Mutation p.V451A 0.15 tolerated(0.07) possibly_damaging(0.471) TCGA-19-5956-01 4 154625500 154625500 G T TLR2 Nonsense_Mutation p.E481* 0.35 TCGA-19-5956-01 4 154625610 154625610 G A TLR2 Silent p.E517E 0.11 TCGA-19-5956-01 4 155219488 155219488 T A DCHS2 Missense_Mutation p.N1538I 0.14 deleterious(0.02) benign(0.173) TCGA-19-5956-01 4 155241574 155241574 G T DCHS2 Silent p.L1204L 0.18 TCGA-19-5956-01 4 155242057 155242057 G A DCHS2 Silent p.I1043I 0.56 TCGA-19-5956-01 4 155254439 155254439 T C DCHS2 Missense_Mutation p.D475G 0.21 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 4 155298538 155298538 T A DCHS2 Missense_Mutation p.D98V 0.46 deleterious(0.01) possibly_damaging(0.767) TCGA-19-5956-01 4 155458598 155458598 C A PLRG1 Missense_Mutation p.R442I 0.09 deleterious(0) probably_damaging(0.918) TCGA-19-5956-01 4 155488967 155488967 G A FGB Missense_Mutation p.G238D 0.07 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 4 155666013 155666013 G A LRAT Missense_Mutation p.D179N 0.13 tolerated(0.27) possibly_damaging(0.482) TCGA-19-5956-01 4 15569004 15569004 T G CC2D2A Missense_Mutation p.F1063V 0.52 tolerated(0.44) benign(0.016) TCGA-19-5956-01 4 155780 155780 C A ZNF718 RNA 0.14 TCGA-19-5956-01 4 156136124 156136124 C T NPY2R Missense_Mutation p.R345W 0.15 deleterious(0) benign(0.386) TCGA-19-5956-01 4 156276916 156276916 C T MAP9 Silent p.Q414Q 0.13 TCGA-19-5956-01 4 156775244 156775244 C T ASIC5 Silent p.K190K 0.58 TCGA-19-5956-01 4 156828921 156828921 C T TDO2 Nonsense_Mutation p.R94* 0.09 TCGA-19-5956-01 4 157684171 157684171 G A PDGFC 3'UTR 0.47 TCGA-19-5956-01 4 158073963 158073963 T G GLRB Missense_Mutation p.L333R 0.06 deleterious(0) probably_damaging(0.939) TCGA-19-5956-01 4 158091671 158091671 G T GLRB Missense_Mutation p.D429Y 0.08 deleterious(0.01) probably_damaging(0.934) TCGA-19-5956-01 4 158091772 158091772 G A GLRB Silent p.A462A 0.41 TCGA-19-5956-01 4 15818248 15818248 C T CD38 Silent p.T116T 0.25 TCGA-19-5956-01 4 158242724 158242724 C A GRIA2 Nonsense_Mutation p.Y285* 0.17 TCGA-19-5956-01 4 159133874 159133874 A G TMEM144 Missense_Mutation p.I19V 0.14 tolerated(1) benign(0.006) TCGA-19-5956-01 4 159567980 159567980 C T RXFP1 Silent p.I461I 0.59 TCGA-19-5956-01 4 159603547 159603547 G T ETFDH Nonsense_Mutation p.E126* 0.18 TCGA-19-5956-01 4 159780235 159780235 C A FNIP2 Missense_Mutation p.A295D 0.14 deleterious(0) possibly_damaging(0.511) TCGA-19-5956-01 4 159790260 159790260 C T FNIP2 Silent p.H824H 0.43 TCGA-19-5956-01 4 160264498 160264498 C T RAPGEF2 Missense_Mutation p.R905C 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 160274852 160274852 C T RAPGEF2 Silent p.F1274F 0.19 TCGA-19-5956-01 4 16164928 16164928 G A TAPT1 3'UTR 0.50 TCGA-19-5956-01 4 16164985 16164985 C A TAPT1 Missense_Mutation p.K550N 0.47 tolerated(0.19) benign(0.015) TCGA-19-5956-01 4 16168327 16168327 G A TAPT1 Missense_Mutation p.S468L 0.22 tolerated(0.32) benign(0) TCGA-19-5956-01 4 162307254 162307254 G A FSTL5 Missense_Mutation p.A730V 0.09 tolerated(0.35) possibly_damaging(0.858) TCGA-19-5956-01 4 162841563 162841563 G T FSTL5 Missense_Mutation p.F134L 0.12 tolerated(0.1) probably_damaging(0.937) TCGA-19-5956-01 4 164061529 164061529 C T NAF1 Missense_Mutation p.E242K 0.29 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 4 164087755 164087755 G T NAF1 Missense_Mutation p.P42Q 0.45 tolerated_low_confidence(0.15) benign(0.037) TCGA-19-5956-01 4 164246903 164246903 A T NPY1R Missense_Mutation p.I236K 0.30 deleterious(0.04) benign(0.148) TCGA-19-5956-01 4 164271443 164271443 C T NPY5R Silent p.D6D 0.30 TCGA-19-5956-01 4 164272707 164272707 C A NPY5R Missense_Mutation p.L428I 0.61 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 4 164393808 164393808 G A TKTL2 Missense_Mutation p.P360L 0.41 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 4 164393910 164393910 C T TKTL2 Missense_Mutation p.G326D 0.18 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 4 164394523 164394523 C T TKTL2 Missense_Mutation p.A122T 0.09 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 4 164394543 164394543 C T TKTL2 Missense_Mutation p.R115Q 0.76 deleterious(0.04) probably_damaging(0.909) TCGA-19-5956-01 4 16504205 16504205 G A LDB2 3'UTR 0.41 TCGA-19-5956-01 4 16504315 16504315 G A LDB2 Missense_Mutation p.A358V 0.42 deleterious(0.04) benign(0.044) TCGA-19-5956-01 4 165891228 165891228 C T TRIM61 5'UTR 0.36 TCGA-19-5956-01 4 16597384 16597384 G A LDB2 Missense_Mutation p.T117M 0.07 tolerated(0.13) possibly_damaging(0.603) TCGA-19-5956-01 4 166231849 166231849 C T KLHL2 Missense_Mutation p.A399V 0.55 tolerated(1) benign(0.037) TCGA-19-5956-01 4 166263136 166263136 C A MSMO1 3'UTR 0.55 TCGA-19-5956-01 4 166795174 166795174 A C TLL1 Missense_Mutation p.N40H 0.09 tolerated_low_confidence(0.52) benign(0.001) TCGA-19-5956-01 4 166946578 166946578 G A TLL1 Missense_Mutation p.E385K 0.23 deleterious(0.05) probably_damaging(0.949) TCGA-19-5956-01 4 166964463 166964463 G T TLL1 Missense_Mutation p.Q472H 0.19 tolerated(0.55) benign(0.024) TCGA-19-5956-01 4 166986890 166986890 T C TLL1 Missense_Mutation p.L688P 0.20 deleterious(0.05) benign(0.344) TCGA-19-5956-01 4 169138174 169138174 C T DDX60 Silent p.L1683L 0.59 TCGA-19-5956-01 4 169227764 169227764 C T DDX60 Silent p.S124S 0.09 TCGA-19-5956-01 4 169343789 169343789 C T DDX60L Silent p.S710S 0.52 TCGA-19-5956-01 4 169362504 169362504 C A DDX60L Missense_Mutation p.E426D 0.52 tolerated(0.3) benign(0.001) TCGA-19-5956-01 4 169589506 169589506 G T PALLD Missense_Mutation p.E358D 0.32 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 4 169611772 169611772 G A PALLD Missense_Mutation p.V452M 0.08 deleterious(0) possibly_damaging(0.767) TCGA-19-5956-01 4 169632958 169632958 C T PALLD Silent p.S616S 0.59 TCGA-19-5956-01 4 169812202 169812202 C T PALLD Silent p.G698G 0.08 TCGA-19-5956-01 4 170037775 170037775 G A SH3RF1 Missense_Mutation p.A595V 0.46 tolerated(0.12) benign(0.004) TCGA-19-5956-01 4 1701756 1701756 C A SLBP Missense_Mutation p.R108I 0.42 deleterious(0) probably_damaging(0.953) TCGA-19-5956-01 4 170601322 170601322 G A CLCN3 Silent p.V94V 0.27 TCGA-19-5956-01 4 170628058 170628058 T C CLCN3 Missense_Mutation p.V597A 0.13 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 4 170641226 170641226 G A CLCN3 3'UTR 0.35 TCGA-19-5956-01 4 171009630 171009630 G A AADAT Silent p.A51A 0.17 TCGA-19-5956-01 4 175237376 175237376 G A CEP44 Missense_Mutation p.A341T 0.36 tolerated(0.3) benign(0.009) TCGA-19-5956-01 4 175443214 175443214 G A HPGD Missense_Mutation p.A33V 0.15 tolerated(0.27) possibly_damaging(0.638) TCGA-19-5956-01 4 175649717 175649717 C T GLRA3 Missense_Mutation p.A134T 0.07 tolerated(0.07) possibly_damaging(0.573) TCGA-19-5956-01 4 177081210 177081210 A G WDR17 Missense_Mutation p.D888G 0.15 deleterious(0.01) possibly_damaging(0.574) TCGA-19-5956-01 4 177113912 177113912 G A SPATA4 Missense_Mutation p.S185L 0.59 deleterious(0) probably_damaging(0.943) TCGA-19-5956-01 4 177190179 177190179 A - ASB5 Frame_Shift_Del p.F27Lfs*5 0.14 TCGA-19-5956-01 4 177650713 177650713 G A VEGFC Missense_Mutation p.A112V 0.44 tolerated(0.39) probably_damaging(0.997) TCGA-19-5956-01 4 178355642 178355642 G A AGA Missense_Mutation p.R234C 0.16 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 17847453 17847453 G A NCAPG 3'Flank 0.26 TCGA-19-5956-01 4 1807586 1807586 C T FGFR3 Silent p.P587P 0.23 TCGA-19-5956-01 4 1821068 1821068 G A LETM1 Silent p.S580S 0.49 TCGA-19-5956-01 4 183675834 183675834 C A TENM3 Silent p.I1438I 0.15 TCGA-19-5956-01 4 183836180 183836180 T A DCTD Missense_Mutation p.K58M 0.06 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 4 184174927 184174927 T G WWC2 Missense_Mutation p.I324S 0.17 tolerated(0.08) probably_damaging(0.998) TCGA-19-5956-01 4 184241332 184241332 C A CLDN22 Missense_Mutation p.V14F 0.19 tolerated(0.18) benign(0.219) TCGA-19-5956-01 4 184368184 184368184 G T CDKN2AIP Missense_Mutation p.W449C 0.58 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 4 185038185 185038185 G A ENPP6 Missense_Mutation p.R227W 0.08 tolerated(0.05) benign(0.011) TCGA-19-5956-01 4 185311897 185311897 T C IRF2 Missense_Mutation p.E234G 0.16 deleterious(0.03) probably_damaging(0.994) TCGA-19-5956-01 4 185550641 185550641 G A CASP3 Nonsense_Mutation p.R207* 0.16 TCGA-19-5956-01 4 185599414 185599414 G A PRIMPOL Silent p.R291R 0.41 TCGA-19-5956-01 4 185615823 185615823 G A PRIMPOL Missense_Mutation p.A525T 0.54 probably_damaging(0.998) TCGA-19-5956-01 4 185637575 185637575 C A CENPU Missense_Mutation p.E198D 0.16 tolerated(0.08) possibly_damaging(0.86) TCGA-19-5956-01 4 185638317 185638317 G A CENPU Silent p.I118I 0.34 TCGA-19-5956-01 4 185697782 185697782 C T ACSL1 Silent p.E204E 0.54 TCGA-19-5956-01 4 185940213 185940213 G T HELT Missense_Mutation p.G44V 0.43 tolerated_low_confidence(0.14) benign(0.004) TCGA-19-5956-01 4 185941547 185941547 G A HELT Missense_Mutation p.R202H 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 186283155 186283155 T G SNX25 Missense_Mutation p.F746C 0.34 deleterious(0) possibly_damaging(0.823) TCGA-19-5956-01 4 186326935 186326935 G A UFSP2 Silent p.I399I 0.09 TCGA-19-5956-01 4 186423520 186423520 G A PDLIM3 Silent p.C341C 0.43 TCGA-19-5956-01 4 187075712 187075712 G A FAM149A Silent p.T101T 0.19 TCGA-19-5956-01 4 187075757 187075757 G T FAM149A Missense_Mutation p.K116N 0.52 tolerated(0.07) benign(0.013) TCGA-19-5956-01 4 187130097 187130097 G A CYP4V2 Missense_Mutation p.R390H 0.49 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 187535351 187535351 C A FAT1 Missense_Mutation p.D3075Y 0.12 possibly_damaging(0.691) TCGA-19-5956-01 4 187539937 187539937 G A FAT1 Silent p.Y2601Y 0.18 TCGA-19-5956-01 4 187540364 187540364 G T FAT1 Missense_Mutation p.P2459Q 0.15 benign(0.331) TCGA-19-5956-01 4 187540473 187540473 C A FAT1 Missense_Mutation p.D2423Y 0.11 possibly_damaging(0.776) TCGA-19-5956-01 4 187540954 187540954 G A FAT1 Silent p.G2262G 0.14 TCGA-19-5956-01 4 187542336 187542336 C A FAT1 Missense_Mutation p.D1802Y 0.32 possibly_damaging(0.629) TCGA-19-5956-01 4 187584747 187584747 G A FAT1 Nonsense_Mutation p.R1096* 0.26 TCGA-19-5956-01 4 187629912 187629912 G T FAT1 Missense_Mutation p.S357Y 0.11 probably_damaging(0.928) TCGA-19-5956-01 4 188924932 188924932 T C ZFP42 3'UTR 0.75 TCGA-19-5956-01 4 1978259 1978259 C T WHSC1 Missense_Mutation p.R1227W 0.14 deleterious(0) probably_damaging(0.941) TCGA-19-5956-01 4 20550684 20550684 C A SLIT2 Missense_Mutation p.L808I 0.15 tolerated(0.18) probably_damaging(0.997) TCGA-19-5956-01 4 20620413 20620413 G A SLIT2 Silent p.R1457R 0.43 TCGA-19-5956-01 4 20711397 20711397 G A PACRGL Splice_Site p.X122_splice 0.45 TCGA-19-5956-01 4 21699080 21699080 C A KCNIP4 Intron 0.15 TCGA-19-5956-01 4 22425956 22425956 T G GPR125 Missense_Mutation p.D488A 0.21 deleterious(0) possibly_damaging(0.577) TCGA-19-5956-01 4 2254171 2254171 C T MXD4 Silent p.T91T 0.17 TCGA-19-5956-01 4 22749225 22749225 T - GBA3 Frame_Shift_Del p.K199Rfs*77 0.31 TCGA-19-5956-01 4 22749252 22749252 G T GBA3 Missense_Mutation p.S207I 0.11 deleterious(0.04) probably_damaging(0.978) TCGA-19-5956-01 4 22820518 22820518 G A GBA3 Missense_Mutation p.R461Q 0.64 tolerated(0.27) benign(0.001) TCGA-19-5956-01 4 23814438 23814438 G A PPARGC1A Missense_Mutation p.R651C 0.43 deleterious(0) unknown(0) TCGA-19-5956-01 4 248411 248411 C A ZNF876P RNA 0.25 TCGA-19-5956-01 4 25026491 25026491 C A LGI2 Nonsense_Mutation p.E122* 0.22 TCGA-19-5956-01 4 25125518 25125518 T C SEPSECS 3'UTR 0.12 TCGA-19-5956-01 4 25260777 25260777 G A PI4K2B Missense_Mutation p.R292K 0.17 tolerated(0.66) benign(0.02) TCGA-19-5956-01 4 25315729 25315729 C A ZCCHC4 Silent p.A63A 0.11 TCGA-19-5956-01 4 25404633 25404633 C A ANAPC4 Silent p.R419R 0.30 TCGA-19-5956-01 4 26661255 26661255 G A TBC1D19 Missense_Mutation p.G173S 0.45 tolerated(0.92) benign(0.003) TCGA-19-5956-01 4 26685352 26685352 T C TBC1D19 Missense_Mutation p.V291A 0.21 deleterious(0) benign(0.237) TCGA-19-5956-01 4 2833695 2833695 G A SH3BP2 Missense_Mutation p.E523K 0.12 deleterious_low_confidence(0.01) benign(0.375) TCGA-19-5956-01 4 2877666 2877666 G A ADD1 Silent p.A8A 0.42 TCGA-19-5956-01 4 2909544 2909544 A G ADD1 Silent p.P527P 0.12 TCGA-19-5956-01 4 2986264 2986264 G A GRK4 Missense_Mutation p.R26H 0.18 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 2990496 2990496 G T GRK4 Missense_Mutation p.R64I 0.11 deleterious(0) possibly_damaging(0.897) TCGA-19-5956-01 4 3030953 3030953 G T GRK4 Missense_Mutation p.K362N 0.10 tolerated(0.27) benign(0.006) TCGA-19-5956-01 4 3176786 3176786 G A HTT Silent p.A1453A 0.24 TCGA-19-5956-01 4 3424704 3424704 C T RGS12 Missense_Mutation p.R1036W 0.18 deleterious(0) probably_damaging(0.943) TCGA-19-5956-01 4 3494772 3494772 G A DOK7 Silent p.S353S 0.33 TCGA-19-5956-01 4 36179566 36179566 C T ARAP2 Silent p.S580S 0.31 TCGA-19-5956-01 4 366770 366770 A T ZNF141 Nonsense_Mutation p.K182* 0.18 TCGA-19-5956-01 4 367474 367474 T A ZNF141 Silent p.I416I 0.54 TCGA-19-5956-01 4 38016168 38016168 G T TBC1D1 Missense_Mutation p.K152N 0.49 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 4 38016279 38016279 G A TBC1D1 Silent p.P189P 0.43 TCGA-19-5956-01 4 38022259 38022259 C A TBC1D1 Silent p.S340S 0.49 TCGA-19-5956-01 4 38037255 38037255 C A TBC1D1 Missense_Mutation p.S450Y 0.29 deleterious(0.03) probably_damaging(0.935) TCGA-19-5956-01 4 38691501 38691501 G T KLF3 Splice_Site p.X232_splice 0.46 TCGA-19-5956-01 4 38776506 38776506 T G TLR10 Missense_Mutation p.N236H 0.12 tolerated(0.46) benign(0.01) TCGA-19-5956-01 4 38799017 38799017 G A TLR1 Missense_Mutation p.S479F 0.25 tolerated(0.74) benign(0.038) TCGA-19-5956-01 4 38800023 38800023 G T TLR1 Missense_Mutation p.L144M 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 38829644 38829644 G T TLR6 Missense_Mutation p.S484Y 0.11 tolerated(1) benign(0.078) TCGA-19-5956-01 4 38829687 38829687 C T TLR6 Missense_Mutation p.V470I 0.41 tolerated(0.48) benign(0.003) TCGA-19-5956-01 4 38829924 38829924 C A TLR6 Missense_Mutation p.D391Y 0.10 deleterious(0.02) benign(0.19) TCGA-19-5956-01 4 39033870 39033870 G A TMEM156 Missense_Mutation p.P22S 0.36 deleterious(0.03) benign(0.135) TCGA-19-5956-01 4 39104989 39104989 C T KLHL5 Silent p.F507F 0.20 TCGA-19-5956-01 4 39217584 39217584 C T WDR19 Missense_Mutation p.A362V 0.43 tolerated(0.09) benign(0.401) TCGA-19-5956-01 4 39271616 39271616 G A WDR19 Missense_Mutation p.D1127N 0.46 deleterious(0.05) benign(0.233) TCGA-19-5956-01 4 39278698 39278698 C A WDR19 Missense_Mutation p.L1259I 0.15 tolerated(0.19) benign(0.091) TCGA-19-5956-01 4 39310564 39310564 G T RFC1 Missense_Mutation p.S526Y 0.22 deleterious(0.01) benign(0.044) TCGA-19-5956-01 4 39313166 39313166 C T RFC1 Missense_Mutation p.A463T 0.15 tolerated(0.35) benign(0.003) TCGA-19-5956-01 4 39314446 39314446 C A RFC1 Missense_Mutation p.V437L 0.44 deleterious(0) possibly_damaging(0.891) TCGA-19-5956-01 4 39409009 39409009 C A KLB Missense_Mutation p.S147Y 0.42 deleterious(0.01) probably_damaging(0.956) TCGA-19-5956-01 4 39515704 39515704 G T UGDH Missense_Mutation p.S88Y 0.20 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 4 39606753 39606753 C T SMIM14 Missense_Mutation p.G5R 0.29 deleterious(0) probably_damaging(0.987) TCGA-19-5956-01 4 39868611 39868611 C T PDS5A Missense_Mutation p.A838T 0.15 deleterious(0.01) probably_damaging(0.944) TCGA-19-5956-01 4 39902076 39902076 G A PDS5A Silent p.R517R 0.50 TCGA-19-5956-01 4 39915256 39915256 G A PDS5A Missense_Mutation p.P323S 0.51 tolerated(0.13) possibly_damaging(0.447) TCGA-19-5956-01 4 40098907 40098907 A G N4BP2 5'UTR 0.23 TCGA-19-5956-01 4 40108620 40108620 G A N4BP2 Missense_Mutation p.A492T 0.35 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 40122176 40122176 C T N4BP2 Silent p.S815S 0.09 TCGA-19-5956-01 4 40245141 40245141 C A RHOH Silent p.V45V 0.30 TCGA-19-5956-01 4 40245503 40245503 C T RHOH Missense_Mutation p.A166V 0.20 deleterious(0.01) probably_damaging(0.994) TCGA-19-5956-01 4 40356611 40356611 G T CHRNA9 3'UTR 0.19 TCGA-19-5956-01 4 40440544 40440544 C T RBM47 Missense_Mutation p.E123K 0.14 tolerated(0.1) benign(0.054) TCGA-19-5956-01 4 40792702 40792702 C T NSUN7 Missense_Mutation p.P374S 0.23 deleterious(0) probably_damaging(0.965) TCGA-19-5956-01 4 40796470 40796470 A G NSUN7 Missense_Mutation p.E420G 0.24 tolerated(0.1) benign(0.098) TCGA-19-5956-01 4 41682098 41682098 C T LIMCH1 Missense_Mutation p.R815C 0.19 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 41749540 41749540 G T PHOX2B Silent p.L85L 0.40 TCGA-19-5956-01 4 41983856 41983856 A G DCAF4L1 Missense_Mutation p.K16R 0.24 tolerated(0.11) unknown(0) TCGA-19-5956-01 4 41984467 41984467 T C DCAF4L1 Missense_Mutation p.S220P 0.42 tolerated(0.08) possibly_damaging(0.616) TCGA-19-5956-01 4 4199232 4199232 G A OTOP1 Silent p.I443I 0.52 TCGA-19-5956-01 4 420040 420040 C A ABCA11P RNA 0.19 TCGA-19-5956-01 4 420632 420632 C T ABCA11P RNA 0.39 TCGA-19-5956-01 4 42446638 42446638 G T ATP8A1 Missense_Mutation p.T991N 0.49 deleterious(0.03) benign(0.002) TCGA-19-5956-01 4 4269506 4269506 A G LYAR 3'UTR 0.82 TCGA-19-5956-01 4 4281230 4281230 G T LYAR Missense_Mutation p.H125N 0.11 tolerated(0.44) benign(0.011) TCGA-19-5956-01 4 436510 436510 C A ZNF721 Missense_Mutation p.E582D 0.25 deleterious(0.03) benign(0.346) TCGA-19-5956-01 4 437198 437198 C T ZNF721 Missense_Mutation p.R353K 0.11 tolerated(0.21) possibly_damaging(0.785) TCGA-19-5956-01 4 4421830 4421830 G A STX18 Silent p.R313R 0.26 TCGA-19-5956-01 4 44626795 44626795 C A YIPF7 Missense_Mutation p.G168V 0.43 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 46252240 46252240 T G GABRA2 3'UTR 0.20 TCGA-19-5956-01 4 46252567 46252567 C A GABRA2 Missense_Mutation p.A372S 0.10 tolerated(0.82) benign(0.06) TCGA-19-5956-01 4 47427903 47427903 G A GABRB1 Silent p.R431R 0.19 TCGA-19-5956-01 4 47428072 47428072 C A GABRB1 3'UTR 0.14 TCGA-19-5956-01 4 47538020 47538020 C T ATP10D Silent p.L329L 0.40 TCGA-19-5956-01 4 47538548 47538548 T G ATP10D Missense_Mutation p.F370L 0.11 deleterious(0.04) probably_damaging(0.997) TCGA-19-5956-01 4 47556924 47556924 G A ATP10D Missense_Mutation p.R606Q 0.51 deleterious(0.05) possibly_damaging(0.546) TCGA-19-5956-01 4 47563058 47563058 T G ATP10D Silent p.S878S 0.22 TCGA-19-5956-01 4 47593425 47593425 C A ATP10D 3'UTR 0.23 TCGA-19-5956-01 4 47605454 47605454 C T CORIN Silent p.T924T 0.43 TCGA-19-5956-01 4 47850158 47850158 C T NFXL1 3'UTR 0.18 TCGA-19-5956-01 4 47857078 47857078 T C NFXL1 Missense_Mutation p.K807E 0.09 deleterious(0) possibly_damaging(0.493) TCGA-19-5956-01 4 47898597 47898597 G A NFXL1 Silent p.C424C 0.34 TCGA-19-5956-01 4 47939471 47939471 C A CNGA1 Missense_Mutation p.R416I 0.10 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 4 48096148 48096148 G A TXK Missense_Mutation p.H219Y 0.09 tolerated(0.44) benign(0.007) TCGA-19-5956-01 4 48503734 48503734 C T FRYL Missense_Mutation p.R2833Q 0.08 tolerated(0.68) probably_damaging(0.992) TCGA-19-5956-01 4 48567588 48567588 C A FRYL Missense_Mutation p.R1097I 0.36 tolerated(0.05) benign(0.241) TCGA-19-5956-01 4 48622678 48622678 G A FRYL Missense_Mutation p.R98W 0.12 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 4 48854011 48854011 A G OCIAD1 Intron 0.24 TCGA-19-5956-01 4 48859263 48859264 - A OCIAD1 Frame_Shift_Ins p.N196Kfs*5 0.19 TCGA-19-5956-01 4 48901900 48901900 C T OCIAD2 Missense_Mutation p.A37T 0.12 tolerated(0.17) benign(0.13) TCGA-19-5956-01 4 48901915 48901915 G T OCIAD2 Missense_Mutation p.L32M 0.28 tolerated(0.13) probably_damaging(0.936) TCGA-19-5956-01 4 48990592 48990592 G A CWH43 Missense_Mutation p.A48T 0.22 tolerated(0.13) benign(0.183) TCGA-19-5956-01 4 48993525 48993525 C T CWH43 Missense_Mutation p.A97V 0.23 deleterious(0) possibly_damaging(0.642) TCGA-19-5956-01 4 49005887 49005887 G T CWH43 Missense_Mutation p.G313V 0.25 tolerated(0.14) possibly_damaging(0.721) TCGA-19-5956-01 4 52752804 52752804 C T DCUN1D4 Silent p.N138N 0.21 TCGA-19-5956-01 4 52861802 52861802 C T LRRC66 Silent p.Q462Q 0.28 TCGA-19-5956-01 4 52862316 52862316 T C LRRC66 Missense_Mutation p.N291S 0.30 tolerated(0.3) benign(0.003) TCGA-19-5956-01 4 54324856 54324856 A C FIP1L1 Missense_Mutation p.E512D 0.21 tolerated(0.41) benign(0.16) TCGA-19-5956-01 4 54424087 54424087 T C LNX1 Intron 0.39 TCGA-19-5956-01 4 54880254 54880254 C T CHIC2 Nonsense_Mutation p.W121* 0.26 TCGA-19-5956-01 4 54967918 54967918 C A GSX2 Silent p.I248I 0.07 TCGA-19-5956-01 4 55152092 55152092 G T PDGFRA Missense_Mutation p.D842Y 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 55598048 55598048 G T KIT Nonsense_Mutation p.E749* 0.19 TCGA-19-5956-01 4 5564516 5564516 C T EVC2 3'UTR 0.12 TCGA-19-5956-01 4 5564692 5564692 C A EVC2 Missense_Mutation p.E1270D 0.48 deleterious(0) possibly_damaging(0.832) TCGA-19-5956-01 4 5570310 5570310 G A EVC2 Missense_Mutation p.R1140C 0.47 tolerated(0.05) benign(0.01) TCGA-19-5956-01 4 55948737 55948737 G A KDR Missense_Mutation p.P1243L 0.21 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 55972877 55972877 C T KDR Missense_Mutation p.A505T 0.41 tolerated(0.15) benign(0.039) TCGA-19-5956-01 4 55974005 55974005 G A KDR Silent p.Y437Y 0.23 TCGA-19-5956-01 4 5620325 5620325 C A EVC2 Missense_Mutation p.M862I 0.27 tolerated(0.06) benign(0.231) TCGA-19-5956-01 4 56236204 56236204 C A SRD5A3 Missense_Mutation p.S301R 0.10 deleterious(0.02) possibly_damaging(0.47) TCGA-19-5956-01 4 56310021 56310021 C T CLOCK Missense_Mutation p.V579I 0.39 tolerated(0.3) possibly_damaging(0.748) TCGA-19-5956-01 4 56315636 56315636 G A CLOCK Missense_Mutation p.T459M 0.53 tolerated(0.05) benign(0.014) TCGA-19-5956-01 4 56448386 56448386 C A PDCL2 Nonsense_Mutation p.E9* 0.25 TCGA-19-5956-01 4 56458310 56458310 G A PDCL2 5'UTR 0.58 TCGA-19-5956-01 4 56750039 56750039 C A EXOC1 Missense_Mutation p.F425L 0.13 tolerated(0.07) probably_damaging(0.919) TCGA-19-5956-01 4 56759794 56759794 G T EXOC1 Nonsense_Mutation p.G601* 0.11 TCGA-19-5956-01 4 57181608 57181608 C T KIAA1211 Missense_Mutation p.A647V 0.12 tolerated(0.13) possibly_damaging(0.695) TCGA-19-5956-01 4 57219632 57219632 A C AASDH Missense_Mutation p.L505R 0.23 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 4 5754767 5754767 C T EVC Missense_Mutation p.R435C 0.41 tolerated(0.24) benign(0.01) TCGA-19-5956-01 4 57796363 57796363 G T REST Nonsense_Mutation p.E447* 0.16 TCGA-19-5956-01 4 57797495 57797495 C A REST Missense_Mutation p.S824Y 0.20 tolerated(0.11) benign(0.364) TCGA-19-5956-01 4 57861027 57861028 - A POLR2B Frame_Shift_Ins p.V193Gfs*22 0.30 TCGA-19-5956-01 4 57861434 57861434 G T POLR2B Missense_Mutation p.E198D 0.33 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 4 57873112 57873112 A G POLR2B Missense_Mutation p.T450A 0.11 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 57889915 57889915 G A POLR2B Missense_Mutation p.E952K 0.49 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 57896412 57896412 G A POLR2B Silent p.Q1094Q 0.50 TCGA-19-5956-01 4 57898489 57898489 G T IGFBP7 Intron 0.41 TCGA-19-5956-01 4 5806483 5806483 C T EVC Missense_Mutation p.R826W 0.12 tolerated(0.08) possibly_damaging(0.851) TCGA-19-5956-01 4 5838507 5838507 G A CRMP1 Silent p.V479V 0.40 TCGA-19-5956-01 4 59358 59358 C A ZNF595 Missense_Mutation p.F13L 0.04 deleterious_low_confidence(0.02) probably_damaging(0.99) TCGA-19-5956-01 4 5960972 5960972 G A C4orf50 3'UTR 0.25 TCGA-19-5956-01 4 62758631 62758631 C T LPHN3 Missense_Mutation p.R512C 0.46 deleterious(0.02) probably_damaging(0.93) TCGA-19-5956-01 4 62812733 62812733 C A LPHN3 Missense_Mutation p.H773N 0.44 tolerated(0.4) possibly_damaging(0.568) TCGA-19-5956-01 4 62845386 62845386 C T LPHN3 Missense_Mutation p.R903W 0.13 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 4 6335428 6335428 C T PPP2R2C Missense_Mutation p.R274H 0.10 tolerated(0.1) benign(0.014) TCGA-19-5956-01 4 660329 660329 G T PDE6B Missense_Mutation p.D760Y 0.37 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 66230894 66230894 G A EPHA5 Missense_Mutation p.R693C 0.38 tolerated(0.12) possibly_damaging(0.893) TCGA-19-5956-01 4 6711272 6711272 G A MRFAP1L1 Missense_Mutation p.L29F 0.12 tolerated(0.11) probably_damaging(0.934) TCGA-19-5956-01 4 673734 673734 C T MYL5 Silent p.D73D 0.14 TCGA-19-5956-01 4 68379869 68379869 C A CENPC Missense_Mutation p.R456I 0.29 tolerated(0.15) probably_damaging(0.979) TCGA-19-5956-01 4 68441150 68441150 G T STAP1 Missense_Mutation p.Q80H 0.25 tolerated(0.12) benign(0.001) TCGA-19-5956-01 4 68562380 68562380 G A UBA6 Silent p.I39I 0.40 TCGA-19-5956-01 4 6865421 6865421 T G KIAA0232 Silent p.P1104P 0.24 TCGA-19-5956-01 4 68784849 68784849 C T TMPRSS11A Missense_Mutation p.R268H 0.09 tolerated(0.31) benign(0.003) TCGA-19-5956-01 4 68810245 68810245 C T TMPRSS11A Missense_Mutation p.E82K 0.16 deleterious(0.05) benign(0.172) TCGA-19-5956-01 4 69179831 69179831 G A YTHDC1 Nonsense_Mutation p.R724* 0.57 TCGA-19-5956-01 4 69343301 69343301 G T TMPRSS11E Missense_Mutation p.G308C 0.09 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 4 69362643 69362643 A C TMPRSS11E 3'UTR 0.12 TCGA-19-5956-01 4 69426267 69426267 C A UGT2B17 Missense_Mutation p.Q331H 0.14 deleterious(0) probably_damaging(0.974) TCGA-19-5956-01 4 69795781 69795781 C T UGT2A3 Missense_Mutation p.R445K 0.43 tolerated(0.24) benign(0.012) TCGA-19-5956-01 4 69817126 69817126 C A UGT2A3 Missense_Mutation p.R118I 0.43 tolerated(0.16) benign(0.038) TCGA-19-5956-01 4 70146596 70146596 C A UGT2B28 Missense_Mutation p.F126L 0.93 tolerated(1) benign(0.001) TCGA-19-5956-01 4 70156448 70156448 G A UGT2B28 Missense_Mutation p.G410E 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 70346583 70346583 T C UGT2B4 Silent p.Q452Q 0.30 TCGA-19-5956-01 4 70505016 70505016 C T UGT2A2 Missense_Mutation p.A115T 0.12 tolerated(0.77) benign(0.001) TCGA-19-5956-01 4 70505140 70505140 A C UGT2A2 Missense_Mutation p.N73K 0.21 tolerated(0.35) benign(0.003) TCGA-19-5956-01 4 70592847 70592847 C T SULT1B1 Missense_Mutation p.E284K 0.07 tolerated(1) benign(0.011) TCGA-19-5956-01 4 70721060 70721060 C T SULT1E1 Missense_Mutation p.R77Q 0.48 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 4 70866670 70866670 C A STATH 3'UTR 0.19 TCGA-19-5956-01 4 71275181 71275181 C - PROL1 Frame_Shift_Del p.P46Hfs*64 0.34 TCGA-19-5956-01 4 71508195 71508195 G T ENAM Missense_Mutation p.R351I 0.10 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 4 71508560 71508560 C T ENAM Silent p.L473L 0.18 TCGA-19-5956-01 4 71509118 71509118 C T ENAM Missense_Mutation p.P659S 0.13 deleterious(0.01) probably_damaging(0.923) TCGA-19-5956-01 4 71509144 71509144 A T ENAM Silent p.G667G 0.08 TCGA-19-5956-01 4 71522987 71522987 C A IGJ Missense_Mutation p.E70D 0.19 deleterious(0.01) possibly_damaging(0.848) TCGA-19-5956-01 4 71588391 71588391 C T RUFY3 Missense_Mutation p.S34F 0.36 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 71693754 71693754 C A GRSF1 Splice_Site p.X317_splice 0.24 TCGA-19-5956-01 4 71701931 71701931 C T GRSF1 Missense_Mutation p.R153Q 0.45 tolerated(0.18) probably_damaging(0.909) TCGA-19-5956-01 4 71863859 71863859 C T DCK Missense_Mutation p.A56V 0.07 deleterious(0) benign(0.237) TCGA-19-5956-01 4 72897780 72897780 C A NPFFR2 Silent p.S54S 0.16 TCGA-19-5956-01 4 73013005 73013005 T G NPFFR2 Missense_Mutation p.F349V 0.13 tolerated(0.07) possibly_damaging(0.481) TCGA-19-5956-01 4 73148885 73148885 G A ADAMTS3 Missense_Mutation p.R1196C 0.44 deleterious_low_confidence(0.05) benign(0.28) TCGA-19-5956-01 4 73184395 73184395 G T ADAMTS3 Missense_Mutation p.P460H 0.42 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 73923751 73923751 G T COX18 3'UTR 0.27 TCGA-19-5956-01 4 74357801 74357801 G A AFM Silent p.A352A 0.24 TCGA-19-5956-01 4 74442010 74442010 G A RASSF6 Missense_Mutation p.A351V 0.10 tolerated(0.31) benign(0.055) TCGA-19-5956-01 4 75177925 75177925 G A EPGN Missense_Mutation p.A53T 0.24 tolerated(0.34) benign(0.294) TCGA-19-5956-01 4 75246851 75246851 G A EREG Missense_Mutation p.C92Y 0.05 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 75250589 75250589 T G EREG 3'UTR 0.57 TCGA-19-5956-01 4 75938100 75938100 C A PARM1 Missense_Mutation p.S170Y 0.43 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 4 76407773 76407773 C T RCHY1 Missense_Mutation p.R254H 0.45 tolerated(0.46) benign(0.046) TCGA-19-5956-01 4 76434398 76434398 T G RCHY1 Missense_Mutation p.K67Q 0.63 tolerated(0.07) benign(0.078) TCGA-19-5956-01 4 76442089 76442089 C T THAP6 Missense_Mutation p.S63L 0.09 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 4 76805748 76805748 G A PPEF2 Nonsense_Mutation p.R249* 0.15 TCGA-19-5956-01 4 76857237 76857237 T G NAAA Intron 0.22 TCGA-19-5956-01 4 76882258 76882258 C A SDAD1 Splice_Site p.X427_splice 0.18 TCGA-19-5956-01 4 76892556 76892556 C T SDAD1 Missense_Mutation p.S256N 0.21 deleterious(0.04) benign(0.008) TCGA-19-5956-01 4 76903182 76903182 C A SDAD1 Missense_Mutation p.Q33H 0.24 deleterious(0) possibly_damaging(0.765) TCGA-19-5956-01 4 76943001 76943001 C T CXCL10 3'UTR 0.19 TCGA-19-5956-01 4 77082877 77082877 T C SCARB2 Missense_Mutation p.I476V 0.26 deleterious(0.02) benign(0.196) TCGA-19-5956-01 4 77670221 77670221 T C SHROOM3 Missense_Mutation p.Y1269H 0.14 tolerated(0.32) possibly_damaging(0.553) TCGA-19-5956-01 4 77675809 77675809 T C SHROOM3 Silent p.G1391G 0.49 TCGA-19-5956-01 4 77677851 77677851 G T SHROOM3 Missense_Mutation p.K1653N 0.35 tolerated(0.12) benign(0.073) TCGA-19-5956-01 4 77818781 77818781 C A SOWAHB Missense_Mutation p.K74N 0.29 deleterious(0) possibly_damaging(0.84) TCGA-19-5956-01 4 77941675 77941675 G A SEPT11 Missense_Mutation p.D269N 0.44 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 4 77976448 77976448 G A CCNI Missense_Mutation p.T182I 0.18 deleterious(0.03) benign(0.016) TCGA-19-5956-01 4 78079767 78079767 G T CCNG2 Nonsense_Mutation p.E28* 0.08 TCGA-19-5956-01 4 7840265 7840265 C T AFAP1 Missense_Mutation p.E238K 0.16 deleterious(0.01) probably_damaging(0.937) TCGA-19-5956-01 4 7845028 7845028 C A AFAP1 Missense_Mutation p.E128D 0.24 tolerated(0.15) probably_damaging(0.998) TCGA-19-5956-01 4 78808377 78808377 G A MRPL1 Missense_Mutation p.A164T 0.41 tolerated(0.16) benign(0.023) TCGA-19-5956-01 4 78979030 78979030 T C FRAS1 5'UTR 0.62 TCGA-19-5956-01 4 79385669 79385669 C T FRAS1 Missense_Mutation p.R2321W 0.13 benign(0.068) TCGA-19-5956-01 4 79387481 79387481 C T FRAS1 Silent p.N2383N 0.28 TCGA-19-5956-01 4 79434557 79434557 C T FRAS1 Missense_Mutation p.S3342L 0.48 probably_damaging(0.987) TCGA-19-5956-01 4 79525503 79525503 C T ANXA3 Nonsense_Mutation p.R288* 0.23 TCGA-19-5956-01 4 79808399 79808399 G A BMP2K Missense_Mutation p.E675K 0.32 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 4 79832326 79832326 G T BMP2K Missense_Mutation p.K875N 0.10 tolerated_low_confidence(0.44) unknown(0) TCGA-19-5956-01 4 79851396 79851396 A C PAQR3 Missense_Mutation p.D144E 0.50 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 80246693 80246693 C T NAA11 Silent p.K113K 0.20 TCGA-19-5956-01 4 81188335 81188335 T C FGF5 Splice_Site p.X119_splice 0.43 TCGA-19-5956-01 4 82027078 82027078 G T PRKG2 Missense_Mutation p.S651Y 0.52 deleterious(0) probably_damaging(0.914) TCGA-19-5956-01 4 82096040 82096040 C A PRKG2 Missense_Mutation p.D179Y 0.08 deleterious(0) possibly_damaging(0.646) TCGA-19-5956-01 4 82368679 82368679 C T RASGEF1B Silent p.K236K 0.08 TCGA-19-5956-01 4 82369379 82369379 C T RASGEF1B Silent p.A166A 0.21 TCGA-19-5956-01 4 8293256 8293256 G A HTRA3 Missense_Mutation p.D290N 0.57 tolerated(0.13) probably_damaging(0.999) TCGA-19-5956-01 4 83348603 83348603 G T HNRNPDL Missense_Mutation p.Q297K 0.09 tolerated(0.48) benign(0.406) TCGA-19-5956-01 4 83369113 83369113 A G ENOPH1 Missense_Mutation p.Y42C 0.44 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 83557760 83557760 G A SCD5 Silent p.V262V 0.47 TCGA-19-5956-01 4 83601904 83601904 G A SCD5 Silent p.D175D 0.08 TCGA-19-5956-01 4 8376724 8376724 G A ACOX3 Silent p.H603H 0.38 TCGA-19-5956-01 4 83778142 83778142 T A SEC31A Missense_Mutation p.K615I 0.21 deleterious(0) possibly_damaging(0.467) TCGA-19-5956-01 4 8383244 8383244 T C ACOX3 Missense_Mutation p.D543G 0.18 tolerated(0.08) benign(0.048) TCGA-19-5956-01 4 83970347 83970347 C A COPS4 Silent p.I61I 0.10 TCGA-19-5956-01 4 84223305 84223305 G A HPSE Silent p.D441D 0.20 TCGA-19-5956-01 4 843756 843756 C T GAK Missense_Mutation p.G1253D 0.22 tolerated(0.05) benign(0.233) TCGA-19-5956-01 4 85569749 85569749 G A CDS1 Silent p.V432V 0.28 TCGA-19-5956-01 4 85593880 85593880 G T WDFY3 3'UTR 0.25 TCGA-19-5956-01 4 85605216 85605216 G A WDFY3 Silent p.I3202I 0.55 TCGA-19-5956-01 4 85654709 85654709 G A WDFY3 Silent p.C2349C 0.23 TCGA-19-5956-01 4 85699680 85699680 G T WDFY3 Missense_Mutation p.F1498L 0.12 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 4 85750200 85750200 G A WDFY3 Missense_Mutation p.R305W 0.44 deleterious(0) probably_damaging(0.943) TCGA-19-5956-01 4 860924 860924 G A GAK Missense_Mutation p.P898S 0.14 tolerated(0.89) benign(0.002) TCGA-19-5956-01 4 861085 861085 C A GAK Missense_Mutation p.R844M 0.29 tolerated(0.1) benign(0.007) TCGA-19-5956-01 4 8620164 8620164 G A CPZ Silent p.R504R 0.09 TCGA-19-5956-01 4 86381 86381 A G Z95704.2 RNA 0.18 TCGA-19-5956-01 4 864578 864578 C A GAK Missense_Mutation p.E723D 0.16 tolerated(0.57) benign(0.001) TCGA-19-5956-01 4 86852076 86852076 C A ARHGAP24 Intron 0.21 TCGA-19-5956-01 4 87643365 87643365 C T PTPN13 Silent p.S462S 0.10 TCGA-19-5956-01 4 87696468 87696468 A G PTPN13 Missense_Mutation p.T1890A 0.28 tolerated(0.17) benign(0.001) TCGA-19-5956-01 4 87770358 87770358 G A SLC10A6 5'UTR 0.11 TCGA-19-5956-01 4 88116608 88116608 C A KLHL8 Missense_Mutation p.K28N 0.24 tolerated_low_confidence(0.28) benign(0.006) TCGA-19-5956-01 4 88375601 88375601 G A NUDT9 Missense_Mutation p.E290K 0.25 deleterious(0.02) possibly_damaging(0.577) TCGA-19-5956-01 4 88534324 88534324 C A DSPP Missense_Mutation p.S329Y 0.13 probably_damaging(0.964) TCGA-19-5956-01 4 88534376 88534376 G A DSPP Silent p.K346K 0.43 TCGA-19-5956-01 4 88583728 88583728 A C DMP1 Missense_Mutation p.K266N 0.26 deleterious(0.02) possibly_damaging(0.551) TCGA-19-5956-01 4 88584056 88584056 G T DMP1 Nonsense_Mutation p.E376* 0.21 TCGA-19-5956-01 4 88584186 88584186 C T DMP1 Missense_Mutation p.P419L 0.16 tolerated(0.13) unknown(0) TCGA-19-5956-01 4 88767634 88767634 G T MEPE 3'UTR 0.13 TCGA-19-5956-01 4 88902937 88902937 G T SPP1 Missense_Mutation p.R176I 0.26 tolerated(0.55) possibly_damaging(0.9) TCGA-19-5956-01 4 89015769 89015769 C A ABCG2 Nonsense_Mutation p.G594* 0.41 TCGA-19-5956-01 4 89018748 89018748 T C ABCG2 Missense_Mutation p.K502E 0.29 tolerated(1) benign(0.002) TCGA-19-5956-01 4 89042911 89042911 C T ABCG2 Missense_Mutation p.G189R 0.29 deleterious(0.01) probably_damaging(0.96) TCGA-19-5956-01 4 891884 891884 C T GAK Silent p.T196T 0.32 TCGA-19-5956-01 4 89317296 89317296 T C HERC6 Splice_Site p.X296_splice 0.14 TCGA-19-5956-01 4 89361326 89361326 A C HERC6 Missense_Mutation p.Q922H 0.17 tolerated(1) benign(0.002) TCGA-19-5956-01 4 89390307 89390307 G A HERC5 Splice_Site p.X379_splice 0.10 TCGA-19-5956-01 4 89407333 89407334 - T HERC5 Frame_Shift_Ins p.V605Cfs*33 0.09 TCGA-19-5956-01 4 89427001 89427001 C T HERC5 Missense_Mutation p.A1016V 0.45 deleterious(0.04) probably_damaging(1) TCGA-19-5956-01 4 89577191 89577191 G T HERC3 Intron 0.22 TCGA-19-5956-01 4 89660228 89660228 G A FAM13A Missense_Mutation p.R839W 0.46 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 89950786 89950786 C T FAM13A Silent p.A14A 0.24 TCGA-19-5956-01 4 90034585 90034585 G T TIGD2 Nonsense_Mutation p.E154* 0.57 TCGA-19-5956-01 4 90035307 90035307 G A TIGD2 Silent p.E394E 0.49 TCGA-19-5956-01 4 90169592 90169592 G A GPRIN3 Missense_Mutation p.S557L 0.19 tolerated(0.32) benign(0.001) TCGA-19-5956-01 4 90171329 90171329 G T GPRIN3 5'UTR 0.25 TCGA-19-5956-01 4 90816310 90816310 C T MMRN1 Missense_Mutation p.A63V 0.12 tolerated_low_confidence(0.35) benign(0.004) TCGA-19-5956-01 4 90844388 90844388 C T MMRN1 Missense_Mutation p.A307V 0.29 tolerated(0.21) benign(0.004) TCGA-19-5956-01 4 90857876 90857876 G T MMRN1 Missense_Mutation p.K1015N 0.37 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 4 91229957 91229957 G T CCSER1 Missense_Mutation p.K174N 0.11 deleterious(0) possibly_damaging(0.892) TCGA-19-5956-01 4 94006340 94006340 C T GRID2 Missense_Mutation p.R147C 0.22 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 4 95129732 95129732 A T SMARCAD1 Missense_Mutation p.T63S 0.12 tolerated_low_confidence(0.1) benign(0.02) TCGA-19-5956-01 4 95229818 95229818 A G HPGDS Silent p.C101C 0.04 TCGA-19-5956-01 4 95506856 95506856 G A PDLIM5 Missense_Mutation p.R181Q 0.16 deleterious(0.04) benign(0.434) TCGA-19-5956-01 4 95508225 95508225 G A PDLIM5 Intron 0.61 TCGA-19-5956-01 4 95508233 95508233 A C PDLIM5 Intron 0.12 TCGA-19-5956-01 4 96090331 96090331 G A UNC5C 3'UTR 0.42 TCGA-19-5956-01 4 96127848 96127848 G T UNC5C Missense_Mutation p.H611Q 0.13 deleterious(0.01) possibly_damaging(0.527) TCGA-19-5956-01 4 96166255 96166255 A C UNC5C Missense_Mutation p.C272W 0.49 deleterious(0) probably_damaging(1) TCGA-19-5956-01 4 96469987 96469987 T C UNC5C Missense_Mutation p.T8A 0.19 tolerated_low_confidence(1) benign(0.217) TCGA-19-5956-01 4 96470117 96470117 G T UNC5C 5'UTR 0.21 TCGA-19-5956-01 4 96761326 96761326 G A PDHA2 Missense_Mutation p.V9M 0.31 tolerated(0.12) benign(0.086) TCGA-19-5956-01 4 9828180 9828180 A G SLC2A9 Silent p.C488C 0.43 TCGA-19-5956-01 4 99355177 99355177 C T RAP1GDS1 Missense_Mutation p.L512F 0.08 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 4 99363146 99363146 C T RAP1GDS1 Silent p.L569L 0.12 TCGA-19-5956-01 4 99579296 99579296 C T TSPAN5 Splice_Site p.X27_splice 0.26 TCGA-19-5956-01 4 99960603 99960603 G A METAP1 Missense_Mutation p.R140Q 0.48 deleterious(0) possibly_damaging(0.84) TCGA-19-5956-01 4 99996165 99996165 G A ADH5 Silent p.G287G 0.55 TCGA-19-5956-01 5 101627295 101627295 C A SLCO4C1 Missense_Mutation p.G124V 0.42 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 102493895 102493895 G A PPIP5K2 Missense_Mutation p.S498N 0.54 tolerated(0.61) benign(0.002) TCGA-19-5956-01 5 10264822 10264822 C A CCT5 Missense_Mutation p.S518Y 0.46 tolerated(0.83) possibly_damaging(0.572) TCGA-19-5956-01 5 102895077 102895077 G T NUDT12 Missense_Mutation p.T100N 0.23 tolerated(1) benign(0) TCGA-19-5956-01 5 10290890 10290890 C T CMBL 5'UTR 0.18 TCGA-19-5956-01 5 10397410 10397410 T C MARCH6 Silent p.H289H 0.13 TCGA-19-5956-01 5 108382809 108382809 C T FER Missense_Mutation p.L612F 0.52 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 108523217 108523217 C T FER Missense_Mutation p.R804C 0.51 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 1085391 1085391 G A SLC12A7 Silent p.I291I 0.31 TCGA-19-5956-01 5 109117225 109117225 T C MAN2A1 Silent p.D501D 0.23 TCGA-19-5956-01 5 110081978 110081978 C A SLC25A46 Nonsense_Mutation p.Y131* 0.08 TCGA-19-5956-01 5 110407553 110407553 T C TSLP 5'UTR 0.49 TCGA-19-5956-01 5 111500693 111500693 C A EPB41L4A Missense_Mutation p.E685D 0.44 tolerated_low_confidence(0.09) benign(0.003) TCGA-19-5956-01 5 112174332 112174332 T C APC Missense_Mutation p.M1014T 0.10 possibly_damaging(0.766) TCGA-19-5956-01 5 112177901 112177901 C T APC Nonsense_Mutation p.R2204* 0.51 TCGA-19-5956-01 5 112177967 112177967 C T APC Nonsense_Mutation p.R2226* 0.10 TCGA-19-5956-01 5 112227596 112227596 C T ZRSR1 Missense_Mutation p.A87V 0.46 deleterious(0) possibly_damaging(0.483) TCGA-19-5956-01 5 112363176 112363176 G A MCC Silent p.N961N 0.38 TCGA-19-5956-01 5 112458430 112458430 G T MCC Silent p.T326T 0.23 TCGA-19-5956-01 5 112770573 112770573 C A TSSK1B 5'UTR 0.34 TCGA-19-5956-01 5 112884247 112884247 G T YTHDC2 Missense_Mutation p.R502I 0.15 deleterious(0.01) benign(0.367) TCGA-19-5956-01 5 112902913 112902913 G T YTHDC2 Missense_Mutation p.E989D 0.51 tolerated(0.18) benign(0.022) TCGA-19-5956-01 5 11346602 11346602 G A CTNND2 Nonsense_Mutation p.R504* 0.11 TCGA-19-5956-01 5 113831781 113831781 G A KCNN2 Missense_Mutation p.D548N 0.16 tolerated(0.25) probably_damaging(0.972) TCGA-19-5956-01 5 114466415 114466415 A G TRIM36 Missense_Mutation p.I569T 0.09 deleterious(0) benign(0.305) TCGA-19-5956-01 5 114466518 114466518 C A TRIM36 Missense_Mutation p.D535Y 0.23 tolerated(0.07) possibly_damaging(0.838) TCGA-19-5956-01 5 115336886 115336886 G T AQPEP Missense_Mutation p.Q590H 0.21 deleterious(0) benign(0.423) TCGA-19-5956-01 5 115827452 115827452 G A SEMA6A Silent p.N173N 0.12 TCGA-19-5956-01 5 118502389 118502389 G T DMXL1 Missense_Mutation p.K1683N 0.11 deleterious(0.02) benign(0.232) TCGA-19-5956-01 5 118532083 118532083 T C DMXL1 Missense_Mutation p.L2492S 0.05 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 118862833 118862833 T C HSD17B4 Silent p.R587R 0.19 TCGA-19-5956-01 5 121187749 121187749 C T FTMT Missense_Mutation p.R31C 0.26 tolerated_low_confidence(0.16) benign(0.001) TCGA-19-5956-01 5 1216785 1216785 G A SLC6A19 Missense_Mutation p.D334N 0.36 tolerated(0.14) probably_damaging(1) TCGA-19-5956-01 5 122748234 122748234 C T CEP120 Missense_Mutation p.A108T 0.23 tolerated(0.28) benign(0.088) TCGA-19-5956-01 5 123973544 123973544 C T ZNF608 3'UTR 0.11 TCGA-19-5956-01 5 1253785 1253785 G T TERT 3'UTR 0.30 TCGA-19-5956-01 5 126213969 126213969 C T MARCH3 Missense_Mutation p.V171M 0.16 tolerated(0.27) benign(0.018) TCGA-19-5956-01 5 126783315 126783315 C T MEGF10 Missense_Mutation p.T932M 0.25 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 5 126791103 126791103 G T MEGF10 Missense_Mutation p.K1012N 0.05 deleterious(0.04) probably_damaging(0.995) TCGA-19-5956-01 5 1268653 1268653 G A TERT Missense_Mutation p.A855V 0.23 tolerated(0.31) benign(0.163) TCGA-19-5956-01 5 127450368 127450368 G T SLC12A2 Missense_Mutation p.R348I 0.29 deleterious(0.03) probably_damaging(0.974) TCGA-19-5956-01 5 127514344 127514344 G T SLC12A2 Missense_Mutation p.K1021N 0.36 deleterious(0) possibly_damaging(0.754) TCGA-19-5956-01 5 127520156 127520156 G A SLC12A2 Missense_Mutation p.R1133Q 0.58 deleterious(0.03) benign(0.018) TCGA-19-5956-01 5 127595128 127595128 G A FBN2 3'UTR 0.23 TCGA-19-5956-01 5 127685140 127685140 G - FBN2 Frame_Shift_Del p.P963Lfs*43 0.24 TCGA-19-5956-01 5 128365326 128365326 G T SLC27A6 Missense_Mutation p.D537Y 0.74 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 5 128983478 128983478 T C ADAMTS19 Silent p.C625C 0.14 TCGA-19-5956-01 5 130495279 130495279 C A HINT1 Missense_Mutation p.G81V 0.11 tolerated(0.19) possibly_damaging(0.695) TCGA-19-5956-01 5 130775326 130775326 C T RAPGEF6 Silent p.A1239A 0.19 TCGA-19-5956-01 5 130831354 130831354 C A RAPGEF6 Splice_Site p.X474_splice 0.20 TCGA-19-5956-01 5 130840390 130840390 C A RAPGEF6 Nonsense_Mutation p.E395* 0.45 TCGA-19-5956-01 5 130980297 130980297 G T FNIP1 3'UTR 0.42 TCGA-19-5956-01 5 131007304 131007304 C T FNIP1 Missense_Mutation p.D945N 0.48 tolerated(0.07) probably_damaging(0.998) TCGA-19-5956-01 5 131657888 131657888 C A SLC22A4 Missense_Mutation p.L222I 0.10 deleterious(0) benign(0.305) TCGA-19-5956-01 5 131679502 131679502 C A SLC22A4 Missense_Mutation p.P544T 0.20 deleterious(0.05) benign(0.005) TCGA-19-5956-01 5 131995418 131995418 C A IL13 Nonsense_Mutation p.Y77* 0.06 TCGA-19-5956-01 5 132032201 132032201 C A KIF3A 3'UTR 0.14 TCGA-19-5956-01 5 132032370 132032370 G A KIF3A Missense_Mutation p.R686C 0.22 deleterious(0.02) benign(0.348) TCGA-19-5956-01 5 132052072 132052072 G A KIF3A Silent p.I273I 0.10 TCGA-19-5956-01 5 132088606 132088606 C T CCNI2 Silent p.L352L 0.25 TCGA-19-5956-01 5 132403186 132403186 G A HSPA4 Silent p.E81E 0.53 TCGA-19-5956-01 5 132408998 132408998 G A HSPA4 Missense_Mutation p.R169Q 0.21 deleterious(0) probably_damaging(0.916) TCGA-19-5956-01 5 132409016 132409016 C T HSPA4 Missense_Mutation p.T175I 0.21 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 5 132537666 132537666 A C FSTL4 Missense_Mutation p.D595E 0.06 deleterious(0.02) possibly_damaging(0.786) TCGA-19-5956-01 5 133541590 133541590 C T PPP2CA Intron 0.41 TCGA-19-5956-01 5 133638344 133638344 C A CDKL3 Missense_Mutation p.K552N 0.22 deleterious(0.02) possibly_damaging(0.511) TCGA-19-5956-01 5 133873699 133873699 G A JADE2 Missense_Mutation p.A27T 0.27 tolerated(0.45) benign(0.001) TCGA-19-5956-01 5 134007542 134007542 T C SEC24A Silent p.S261S 0.43 TCGA-19-5956-01 5 134010838 134010838 C T SEC24A Missense_Mutation p.P361L 0.46 deleterious(0) probably_damaging(0.912) TCGA-19-5956-01 5 134044487 134044487 G A SEC24A Missense_Mutation p.R879H 0.28 tolerated(0.06) benign(0.005) TCGA-19-5956-01 5 134086525 134086525 G A CAMLG Missense_Mutation p.R259Q 0.09 tolerated(0.05) benign(0.016) TCGA-19-5956-01 5 134102657 134102657 G A DDX46 Missense_Mutation p.R86Q 0.33 tolerated(0.44) unknown(0) TCGA-19-5956-01 5 134190736 134190736 A T C5orf24 Missense_Mutation p.K49I 0.45 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-19-5956-01 5 134785252 134785252 G A TIFAB Silent p.V126V 0.22 TCGA-19-5956-01 5 135277071 135277071 G A FBXL21 RNA 0.21 TCGA-19-5956-01 5 135692718 135692718 G A TRPC7 Missense_Mutation p.R120C 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 136320864 136320864 C A SPOCK1 Missense_Mutation p.R319I 0.47 tolerated(0.06) benign(0.271) TCGA-19-5956-01 5 136448177 136448177 C T SPOCK1 Missense_Mutation p.V141M 0.28 tolerated(0.32) benign(0.007) TCGA-19-5956-01 5 137013334 137013334 A G KLHL3 Missense_Mutation p.F179S 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 13708294 13708294 C T DNAH5 Missense_Mutation p.E4426K 0.45 possibly_damaging(0.635) TCGA-19-5956-01 5 137221828 137221828 C T MYOT Silent p.I372I 0.23 TCGA-19-5956-01 5 137284767 137284767 C A FAM13B Missense_Mutation p.E657D 0.18 tolerated(0.2) benign(0.002) TCGA-19-5956-01 5 137521736 137521736 C A KIF20A Missense_Mutation p.Q738K 0.29 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 5 137525548 137525548 A T CDC23 Missense_Mutation p.I491N 0.17 tolerated(0.16) benign(0.017) TCGA-19-5956-01 5 137600235 137600235 C A GFRA3 Missense_Mutation p.D32Y 0.17 deleterious(0.03) unknown(0) TCGA-19-5956-01 5 137728996 137728996 C T KDM3B Silent p.Y922Y 0.27 TCGA-19-5956-01 5 13776626 13776626 C T DNAH5 Missense_Mutation p.A3099T 0.11 possibly_damaging(0.787) TCGA-19-5956-01 5 137780177 137780177 G A REEP2 Missense_Mutation p.V86M 0.44 deleterious(0.03) possibly_damaging(0.756) TCGA-19-5956-01 5 137802846 137802846 G A EGR1 Silent p.P236P 0.40 TCGA-19-5956-01 5 137803578 137803578 G A EGR1 Silent p.S480S 0.19 TCGA-19-5956-01 5 137846307 137846307 G A ETF1 Missense_Mutation p.L344F 0.46 tolerated(0.37) benign(0.008) TCGA-19-5956-01 5 13811773 13811773 C A DNAH5 Missense_Mutation p.G2464C 0.23 benign(0.071) TCGA-19-5956-01 5 13814873 13814873 T C DNAH5 Silent p.K2357K 0.07 TCGA-19-5956-01 5 13823406 13823406 C T DNAH5 Missense_Mutation p.G2218D 0.49 probably_damaging(0.931) TCGA-19-5956-01 5 138266590 138266590 G T CTNNA1 Missense_Mutation p.R755M 0.35 deleterious(0) possibly_damaging(0.778) TCGA-19-5956-01 5 138356917 138356917 C A SIL1 Missense_Mutation p.S237I 0.28 deleterious(0) probably_damaging(0.936) TCGA-19-5956-01 5 13842003 13842003 C T DNAH5 Missense_Mutation p.R1761Q 0.37 possibly_damaging(0.553) TCGA-19-5956-01 5 138456752 138456752 C T SIL1 Silent p.P72P 0.17 TCGA-19-5956-01 5 13871076 13871076 C T DNAH5 Missense_Mutation p.A1212T 0.43 possibly_damaging(0.483) TCGA-19-5956-01 5 13891155 13891155 C T DNAH5 Missense_Mutation p.S836N 0.17 benign(0.213) TCGA-19-5956-01 5 139193154 139193154 C G PSD2 Missense_Mutation p.A211G 0.17 deleterious(0.02) possibly_damaging(0.585) TCGA-19-5956-01 5 139722375 139722375 T C HBEGF Silent p.Q81Q 0.47 TCGA-19-5956-01 5 139929008 139929008 C T EIF4EBP3 3'UTR 0.40 TCGA-19-5956-01 5 139938314 139938314 G T APBB3 Missense_Mutation p.S446R 0.53 deleterious(0.05) benign(0.224) TCGA-19-5956-01 5 140175845 140175845 G A PCDHA2 Silent p.S432S 0.45 TCGA-19-5956-01 5 140181154 140181154 G T PCDHA3 Missense_Mutation p.K124N 0.37 deleterious_low_confidence(0) benign(0.135) TCGA-19-5956-01 5 140182411 140182411 G A PCDHA3 Silent p.P543P 0.11 TCGA-19-5956-01 5 140182528 140182528 G A PCDHA3 Silent p.P582P 0.23 TCGA-19-5956-01 5 140186733 140186733 G T PCDHA4 5'Flank 0.44 TCGA-19-5956-01 5 140187503 140187503 G A PCDHA4 Missense_Mutation p.R244K 0.38 tolerated_low_confidence(0.49) benign(0.05) TCGA-19-5956-01 5 140188875 140188875 C A PCDHA4 Silent p.I701I 0.08 TCGA-19-5956-01 5 140202614 140202614 G A PCDHA5 Silent p.S418S 0.04 TCGA-19-5956-01 5 140203083 140203083 G A PCDHA5 Missense_Mutation p.A575T 0.21 tolerated_low_confidence(0.13) benign(0.031) TCGA-19-5956-01 5 140236996 140236996 G A PCDHA10 Missense_Mutation p.A455T 0.48 tolerated_low_confidence(0.08) benign(0.019) TCGA-19-5956-01 5 140249633 140249634 - A PCDHA11 Frame_Shift_Ins p.I317Nfs*2 0.12 TCGA-19-5956-01 5 140255083 140255083 C T PCDHA12 Missense_Mutation p.P9L 0.38 tolerated_low_confidence(0.56) benign(0.004) TCGA-19-5956-01 5 140255447 140255447 G A PCDHA12 Silent p.P130P 0.27 TCGA-19-5956-01 5 140255647 140255647 G A PCDHA12 Missense_Mutation p.R197Q 0.19 tolerated_low_confidence(0.14) benign(0.314) TCGA-19-5956-01 5 140256644 140256644 G T PCDHA12 Missense_Mutation p.E529D 0.45 deleterious_low_confidence(0) probably_damaging(0.939) TCGA-19-5956-01 5 140256994 140256994 G A PCDHA12 Missense_Mutation p.R646H 0.51 deleterious_low_confidence(0.04) benign(0.152) TCGA-19-5956-01 5 140306772 140306772 C T PCDHAC1 Silent p.L99L 0.21 TCGA-19-5956-01 5 140307514 140307514 C T PCDHAC1 Missense_Mutation p.S346L 0.45 tolerated(0.09) benign(0.099) TCGA-19-5956-01 5 140308159 140308159 G T PCDHAC1 Missense_Mutation p.R561I 0.24 deleterious(0.03) benign(0.167) TCGA-19-5956-01 5 140432252 140432252 G A PCDHB1 Silent p.G399G 0.49 TCGA-19-5956-01 5 140517124 140517124 C T PCDHB5 Missense_Mutation p.S703L 0.22 deleterious_low_confidence(0) benign(0.287) TCGA-19-5956-01 5 140530611 140530611 C A PCDHB6 Missense_Mutation p.S258Y 0.43 deleterious(0) benign(0.205) TCGA-19-5956-01 5 140537074 140537074 C T PCDHB17 Missense_Mutation p.P500S 0.22 deleterious_low_confidence(0.03) benign(0.327) TCGA-19-5956-01 5 140557710 140557710 G T PCDHB8 Missense_Mutation p.R32I 0.22 tolerated_low_confidence(0.54) benign(0.013) TCGA-19-5956-01 5 140563664 140563664 C T PCDHB16 Silent p.N510N 0.47 TCGA-19-5956-01 5 140579363 140579363 A G PCDHB11 Missense_Mutation p.T6A 0.26 tolerated_low_confidence(0.95) benign(0) TCGA-19-5956-01 5 140580757 140580757 C T PCDHB11 Silent p.I470I 0.45 TCGA-19-5956-01 5 140594585 140594585 C T PCDHB13 Missense_Mutation p.P297L 0.44 deleterious_low_confidence(0.01) benign(0.008) TCGA-19-5956-01 5 140594892 140594892 C T PCDHB13 Silent p.N399N 0.41 TCGA-19-5956-01 5 140615509 140615509 C T PCDHB18 RNA 0.17 TCGA-19-5956-01 5 140720503 140720503 C T PCDHGA2 Silent p.S655S 0.23 TCGA-19-5956-01 5 140730136 140730136 C T PCDHGB1 Silent p.F103F 0.10 TCGA-19-5956-01 5 140736772 140736772 C T PCDHGA4 Missense_Mutation p.P669S 0.09 deleterious_low_confidence(0.01) possibly_damaging(0.725) TCGA-19-5956-01 5 140741842 140741842 C T PCDHGB2 Missense_Mutation p.R714C 0.28 tolerated(0.08) benign(0.131) TCGA-19-5956-01 5 140750347 140750347 A G PCDHGB3 Missense_Mutation p.N129S 0.10 deleterious(0.01) probably_damaging(0.994) TCGA-19-5956-01 5 140751583 140751583 C T PCDHGB3 Missense_Mutation p.T541M 0.20 deleterious(0) benign(0.086) TCGA-19-5956-01 5 140755146 140755146 C T PCDHGA6 Missense_Mutation p.A499V 0.20 tolerated_low_confidence(0.35) benign(0.021) TCGA-19-5956-01 5 140767660 140767660 C T PCDHGB4 Missense_Mutation p.S70L 0.27 deleterious(0) benign(0.075) TCGA-19-5956-01 5 140773146 140773146 C T PCDHGA8 Missense_Mutation p.P256S 0.17 tolerated_low_confidence(0.1) benign(0.414) TCGA-19-5956-01 5 140782931 140782931 C A PCDHGA9 Missense_Mutation p.L138M 0.28 tolerated_low_confidence(0.09) benign(0.327) TCGA-19-5956-01 5 140783178 140783178 C T PCDHGA9 Missense_Mutation p.P220L 0.29 deleterious_low_confidence(0.01) possibly_damaging(0.857) TCGA-19-5956-01 5 140783935 140783935 C A PCDHGA9 Missense_Mutation p.F472L 0.19 tolerated_low_confidence(0.09) benign(0.057) TCGA-19-5956-01 5 140788645 140788645 C A PCDHGB6 Missense_Mutation p.F292L 0.21 deleterious(0) possibly_damaging(0.887) TCGA-19-5956-01 5 140793359 140793359 G A PCDHGA10 Missense_Mutation p.R206H 0.57 deleterious_low_confidence(0) probably_damaging(0.936) TCGA-19-5956-01 5 140810707 140810707 C T PCDHGA12 Silent p.N127N 0.50 TCGA-19-5956-01 5 140812426 140812426 C T PCDHGA12 Silent p.V700V 0.34 TCGA-19-5956-01 5 140865366 140865366 G A PCDHGC4 Missense_Mutation p.R209H 0.28 tolerated(0.73) benign(0.032) TCGA-19-5956-01 5 141367371 141367371 G T RNF14 3'UTR 0.43 TCGA-19-5956-01 5 142435645 142435645 G A ARHGAP26 Missense_Mutation p.A476T 0.18 deleterious(0.01) possibly_damaging(0.849) TCGA-19-5956-01 5 143586332 143586332 G T KCTD16 Missense_Mutation p.V19F 0.17 tolerated(0.09) benign(0.08) TCGA-19-5956-01 5 14498669 14498669 C T TRIO Missense_Mutation p.T2751M 0.44 unknown(0) TCGA-19-5956-01 5 145529203 145529203 C A LARS Missense_Mutation p.Q495H 0.05 deleterious(0) benign(0.219) TCGA-19-5956-01 5 145610392 145610392 G T RBM27 Missense_Mutation p.E254D 0.26 tolerated(0.13) benign(0.389) TCGA-19-5956-01 5 14610302 14610302 G T FAM105A Missense_Mutation p.R317I 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 1463782 1463782 C T LPCAT1 Missense_Mutation p.R530H 0.55 tolerated_low_confidence(0.61) benign(0.001) TCGA-19-5956-01 5 146763484 146763484 A C STK32A Missense_Mutation p.N377H 0.36 tolerated(0.13) benign(0.001) TCGA-19-5956-01 5 147011057 147011057 G T JAKMIP2 Silent p.S598S 0.24 TCGA-19-5956-01 5 147469154 147469154 G T SPINK5 Missense_Mutation p.G191V 0.13 tolerated(0.07) probably_damaging(0.95) TCGA-19-5956-01 5 147495980 147495980 G A SPINK5 Missense_Mutation p.R688K 0.20 tolerated(0.21) benign(0.108) TCGA-19-5956-01 5 147805177 147805177 G A FBXO38 Missense_Mutation p.E611K 0.43 tolerated_low_confidence(0.87) probably_damaging(0.979) TCGA-19-5956-01 5 147813069 147813069 C T FBXO38 Silent p.I837I 0.10 TCGA-19-5956-01 5 147889291 147889291 G T HTR4 Missense_Mutation p.F268L 0.19 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 147902864 147902864 C A HTR4 Missense_Mutation p.M133I 0.12 deleterious(0.01) benign(0.349) TCGA-19-5956-01 5 148407274 148407274 C A SH3TC2 Missense_Mutation p.S674I 0.24 tolerated(0.08) benign(0.01) TCGA-19-5956-01 5 149011716 149011716 C T ARHGEF37 Missense_Mutation p.R664W 0.13 deleterious(0) benign(0.009) TCGA-19-5956-01 5 149264383 149264383 C A PDE6A Missense_Mutation p.R629I 0.11 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 5 149276313 149276313 C T PDE6A Silent p.E478E 0.43 TCGA-19-5956-01 5 149360035 149360035 C A SLC26A2 Silent p.V293V 0.24 TCGA-19-5956-01 5 149360114 149360114 G T SLC26A2 Nonsense_Mutation p.E320* 0.48 TCGA-19-5956-01 5 149360238 149360238 C A SLC26A2 Missense_Mutation p.A361D 0.21 deleterious(0) possibly_damaging(0.905) TCGA-19-5956-01 5 149439277 149439277 C A CSF1R Missense_Mutation p.K706N 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 149758830 149758830 C A TCOF1 Silent p.V839V 0.24 TCGA-19-5956-01 5 149912595 149912595 G A NDST1 Splice_Site p.X366_splice 0.25 TCGA-19-5956-01 5 150275895 150275895 G A ZNF300 Silent p.C318C 0.49 TCGA-19-5956-01 5 150310697 150310697 G A ZNF300P1 RNA 0.43 TCGA-19-5956-01 5 150422220 150422220 G A TNIP1 Missense_Mutation p.R339C 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 150443267 150443267 G A TNIP1 Missense_Mutation p.R60W 0.51 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 150647029 150647029 G A GM2A 3'UTR 0.17 TCGA-19-5956-01 5 150838428 150838428 G A SLC36A1 Silent p.P25P 0.38 TCGA-19-5956-01 5 150867635 150867635 G A SLC36A1 Silent p.P417P 0.12 TCGA-19-5956-01 5 150885510 150885510 G T FAT2 Silent p.L4222L 0.23 TCGA-19-5956-01 5 150885569 150885569 G T FAT2 Missense_Mutation p.L4203M 0.21 benign(0.03) TCGA-19-5956-01 5 150886777 150886777 G T FAT2 Missense_Mutation p.A4152E 0.16 benign(0.091) TCGA-19-5956-01 5 151176876 151176876 A C G3BP1 Missense_Mutation p.I210L 0.41 tolerated(0.32) benign(0.007) TCGA-19-5956-01 5 151304089 151304089 G A GLRA1 Nonsense_Mutation p.R8* 0.45 TCGA-19-5956-01 5 153056675 153056675 C T GRIA1 Missense_Mutation p.A338V 0.19 tolerated(0.18) probably_damaging(0.999) TCGA-19-5956-01 5 153085319 153085319 C A GRIA1 Missense_Mutation p.F515L 0.27 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 5 153789216 153789216 G A GALNT10 Missense_Mutation p.R427H 0.39 deleterious(0) possibly_damaging(0.812) TCGA-19-5956-01 5 153792491 153792491 G A GALNT10 Missense_Mutation p.G477R 0.51 tolerated(0.59) probably_damaging(0.958) TCGA-19-5956-01 5 153835639 153835639 A G SAP30L 3'UTR 0.12 TCGA-19-5956-01 5 153855471 153855471 C T HAND1 Splice_Site p.X182_splice 0.55 TCGA-19-5956-01 5 154173274 154173274 G T LARP1 Nonsense_Mutation p.E210* 0.18 TCGA-19-5956-01 5 154210386 154210386 C T FAXDC2 Missense_Mutation p.R114Q 0.37 deleterious(0.04) benign(0.277) TCGA-19-5956-01 5 154267884 154267884 C T GEMIN5 Silent p.R1471R 0.10 TCGA-19-5956-01 5 154291410 154291410 G A GEMIN5 Nonsense_Mutation p.R682* 0.46 TCGA-19-5956-01 5 154396324 154396324 G T KIF4B Nonsense_Mutation p.E969* 0.46 TCGA-19-5956-01 5 154997 154997 T C PLEKHG4B Missense_Mutation p.V311A 0.23 deleterious(0.02) possibly_damaging(0.764) TCGA-19-5956-01 5 156209 156209 G T PLEKHG4B Missense_Mutation p.Q388H 0.06 deleterious(0.01) possibly_damaging(0.825) TCGA-19-5956-01 5 156346485 156346485 C T TIMD4 Missense_Mutation p.G374S 0.17 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 5 156346552 156346552 C T TIMD4 Silent p.R351R 0.19 TCGA-19-5956-01 5 156464282 156464282 G T HAVCR1 Missense_Mutation p.L310I 0.06 tolerated(0.35) benign(0.095) TCGA-19-5956-01 5 156479505 156479505 C T HAVCR1 Silent p.T180T 0.04 TCGA-19-5956-01 5 156590545 156590545 G A FAM71B Missense_Mutation p.T244M 0.12 tolerated(0.26) benign(0) TCGA-19-5956-01 5 156641235 156641235 A G ITK Missense_Mutation p.Y120C 0.06 deleterious(0.01) benign(0.229) TCGA-19-5956-01 5 156671359 156671359 C T ITK Silent p.H440H 0.46 TCGA-19-5956-01 5 156915310 156915310 C T ADAM19 Missense_Mutation p.R838Q 0.09 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 5 156968 156968 G A PLEKHG4B Missense_Mutation p.R454H 0.25 tolerated(0.57) possibly_damaging(0.769) TCGA-19-5956-01 5 158750330 158750330 G A IL12B Silent p.V32V 0.56 TCGA-19-5956-01 5 159344802 159344802 G A ADRA1B Missense_Mutation p.G297D 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 159665678 159665678 C T FABP6 3'UTR 0.53 TCGA-19-5956-01 5 159821885 159821885 G T C5orf54 Missense_Mutation p.L205I 0.46 deleterious(0.04) probably_damaging(0.941) TCGA-19-5956-01 5 160025882 160025882 G T ATP10B Missense_Mutation p.F1153L 0.22 tolerated(1) probably_damaging(0.998) TCGA-19-5956-01 5 160721296 160721296 G T GABRB2 Missense_Mutation p.A444D 0.10 tolerated(0.27) benign(0.148) TCGA-19-5956-01 5 161580388 161580388 T G GABRG2 3'UTR 0.06 TCGA-19-5956-01 5 16177838 16177838 G A MARCH11 Silent p.C230C 0.13 TCGA-19-5956-01 5 162884008 162884008 G T NUDCD2 Missense_Mutation p.S106Y 0.43 deleterious(0.01) benign(0.163) TCGA-19-5956-01 5 162910078 162910078 G T HMMR Nonsense_Mutation p.E529* 0.12 TCGA-19-5956-01 5 16453247 16453247 C T ZNF622 Missense_Mutation p.R394H 0.08 deleterious(0) possibly_damaging(0.902) TCGA-19-5956-01 5 16668527 16668527 G A MYO10 Silent p.D1978D 0.24 TCGA-19-5956-01 5 16675075 16675075 C T MYO10 Silent p.V1617V 0.47 TCGA-19-5956-01 5 16701243 16701243 G A MYO10 Silent p.G1087G 0.56 TCGA-19-5956-01 5 167182199 167182199 T C TENM2 Intron 0.20 TCGA-19-5956-01 5 167645400 167645400 C T TENM2 Missense_Mutation p.R1502C 0.18 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 167674382 167674382 C T TENM2 Silent p.A2146A 0.17 TCGA-19-5956-01 5 167675159 167675159 C T TENM2 Silent p.F2405F 0.42 TCGA-19-5956-01 5 16781872 16781872 C T MYO10 Silent p.K223K 0.45 TCGA-19-5956-01 5 16794841 16794841 G A MYO10 Silent p.G127G 0.23 TCGA-19-5956-01 5 168180998 168180998 T A SLIT3 Missense_Mutation p.N567I 0.58 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 168244407 168244407 G A SLIT3 Nonsense_Mutation p.R231* 0.41 TCGA-19-5956-01 5 169186759 169186759 C A DOCK2 Silent p.V809V 0.12 TCGA-19-5956-01 5 169484629 169484629 C T DOCK2 Missense_Mutation p.P1476S 0.40 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 170148875 170148875 G A KCNIP1 Missense_Mutation p.D110N 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 171337585 171337585 C T FBXW11 Missense_Mutation p.A122T 0.44 tolerated(0.48) benign(0.295) TCGA-19-5956-01 5 17275962 17275962 G A BASP1 Missense_Mutation p.E213K 0.09 deleterious(0.01) probably_damaging(0.982) TCGA-19-5956-01 5 173316714 173316714 G T CPEB4 5'UTR 0.20 TCGA-19-5956-01 5 173491276 173491276 G T NSG2 Missense_Mutation p.K57N 0.11 tolerated(0.06) benign(0.414) TCGA-19-5956-01 5 174869195 174869195 G A DRD1 Missense_Mutation p.T303M 0.39 tolerated(0.1) possibly_damaging(0.767) TCGA-19-5956-01 5 174869330 174869330 C T DRD1 Missense_Mutation p.S258N 0.30 tolerated(0.3) probably_damaging(0.952) TCGA-19-5956-01 5 174939136 174939136 G A SFXN1 Missense_Mutation p.R178H 0.15 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 5 174953708 174953708 C T SFXN1 Nonsense_Mutation p.R314* 0.15 TCGA-19-5956-01 5 175716970 175716970 C T SIMC1 Intron 0.29 TCGA-19-5956-01 5 175775305 175775305 C T KIAA1191 Missense_Mutation p.A172T 0.45 tolerated(0.15) benign(0.009) TCGA-19-5956-01 5 176008515 176008515 A G CDHR2 Missense_Mutation p.T664A 0.12 deleterious(0.01) benign(0.33) TCGA-19-5956-01 5 176018243 176018243 C T CDHR2 Missense_Mutation p.A1191V 0.21 tolerated(0.22) benign(0.184) TCGA-19-5956-01 5 176024187 176024187 C T GPRIN1 Silent p.P883P 0.70 TCGA-19-5956-01 5 176305478 176305478 G A UNC5A Silent p.E674E 0.17 TCGA-19-5956-01 5 176318121 176318121 T G HK3 Missense_Mutation p.T111P 0.16 tolerated(0.22) possibly_damaging(0.529) TCGA-19-5956-01 5 176318407 176318407 A G HK3 Missense_Mutation p.S81P 0.45 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 5 176665341 176665341 C A NSD1 Missense_Mutation p.P1342H 0.30 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-19-5956-01 5 176721004 176721004 C A NSD1 Missense_Mutation p.P2212H 0.23 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 5 176734807 176734807 G A MXD3 Silent p.S160S 0.41 TCGA-19-5956-01 5 176860170 176860170 G A GRK6 Missense_Mutation p.V155M 0.15 tolerated(0.11) benign(0.016) TCGA-19-5956-01 5 176885353 176885353 C T DBN1 Silent p.R496R 0.08 TCGA-19-5956-01 5 176910616 176910616 C T PDLIM7 3'UTR 0.53 TCGA-19-5956-01 5 177019589 177019589 G A TMED9 Silent p.T66T 0.52 TCGA-19-5956-01 5 177059427 177059427 G T RP11-1277A3.2 Intron 0.07 TCGA-19-5956-01 5 177548660 177548660 G A N4BP3 Silent p.E431E 0.54 TCGA-19-5956-01 5 177640010 177640010 G A PHYKPL Missense_Mutation p.R423W 0.22 deleterious(0) possibly_damaging(0.462) TCGA-19-5956-01 5 178139452 178139452 C A ZNF354A Missense_Mutation p.R476I 0.12 deleterious(0.02) benign(0.117) TCGA-19-5956-01 5 178152405 178152405 C A ZNF354A Missense_Mutation p.E76D 0.22 tolerated(0.12) benign(0.379) TCGA-19-5956-01 5 178311178 178311178 G A ZNF354B Silent p.E575E 0.09 TCGA-19-5956-01 5 178566954 178566954 C T ADAMTS2 Missense_Mutation p.G571D 0.15 deleterious(0.02) probably_damaging(0.914) TCGA-19-5956-01 5 178987121 178987121 C T RUFY1 Missense_Mutation p.R136C 0.15 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 5 179045272 179045272 G A HNRNPH1 Missense_Mutation p.P197S 0.11 tolerated(0.11) possibly_damaging(0.77) TCGA-19-5956-01 5 179137044 179137044 G T CANX Missense_Mutation p.K233N 0.22 deleterious(0) possibly_damaging(0.865) TCGA-19-5956-01 5 179264248 179264248 T G SQSTM1 3'UTR 0.44 TCGA-19-5956-01 5 179302162 179302162 G A TBC1D9B Silent p.F642F 0.27 TCGA-19-5956-01 5 179663484 179663484 G A MAPK9 Missense_Mutation p.S392L 0.08 deleterious_low_confidence(0) benign(0.283) TCGA-19-5956-01 5 179728580 179728580 G T GFPT2 Missense_Mutation p.S678Y 0.46 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 5 179996283 179996283 G T CNOT6 Nonsense_Mutation p.E401* 0.17 TCGA-19-5956-01 5 180057703 180057703 G A FLT4 Silent p.C84C 0.27 TCGA-19-5956-01 5 180167008 180167008 G T OR2Y1 Missense_Mutation p.F17L 0.25 deleterious(0.02) benign(0.32) TCGA-19-5956-01 5 180335854 180335854 G A BTNL8 Silent p.V106V 0.47 TCGA-19-5956-01 5 180666120 180666120 G T GNB2L1 Missense_Mutation p.L195M 0.14 deleterious(0) probably_damaging(0.983) TCGA-19-5956-01 5 21765113 21765113 C T CDH12 Missense_Mutation p.V497M 0.46 tolerated(0.05) probably_damaging(0.984) TCGA-19-5956-01 5 21842351 21842351 G A CDH12 Nonsense_Mutation p.Q245* 0.23 TCGA-19-5956-01 5 23522495 23522495 G A PRDM9 Silent p.P197P 0.28 TCGA-19-5956-01 5 26881491 26881491 T G CDH9 Missense_Mutation p.E708D 0.13 tolerated(1) possibly_damaging(0.761) TCGA-19-5956-01 5 31302266 31302266 T C CDH6 Missense_Mutation p.I287T 0.18 deleterious(0) benign(0.238) TCGA-19-5956-01 5 32087783 32087783 T C PDZD2 Missense_Mutation p.V1410A 0.42 tolerated(0.72) benign(0.004) TCGA-19-5956-01 5 32097436 32097436 C A PDZD2 Missense_Mutation p.L2633M 0.12 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 32239119 32239119 G A MTMR12 Silent p.N444N 0.18 TCGA-19-5956-01 5 32356003 32356003 G T ZFR Missense_Mutation p.L1030I 0.44 deleterious(0) unknown(0) TCGA-19-5956-01 5 32784934 32784934 A C NPR3 Missense_Mutation p.I487L 0.12 deleterious(0.01) benign(0.015) TCGA-19-5956-01 5 33467055 33467055 G A TARS Missense_Mutation p.R696Q 0.40 deleterious(0.02) probably_damaging(0.918) TCGA-19-5956-01 5 33881240 33881240 C T ADAMTS12 Missense_Mutation p.S158N 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 33881261 33881261 C A ADAMTS12 Missense_Mutation p.R151I 0.18 tolerated(0.15) benign(0.446) TCGA-19-5956-01 5 33982434 33982434 C T SLC45A2 Missense_Mutation p.D157N 0.48 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 34818958 34818958 T C RAI14 Splice_Site p.X335_splice 0.22 TCGA-19-5956-01 5 34840821 34840821 C T TTC23L Silent p.I15I 0.47 TCGA-19-5956-01 5 34863043 34863043 G T TTC23L Missense_Mutation p.K140N 0.10 tolerated(0.06) probably_damaging(0.915) TCGA-19-5956-01 5 34941240 34941240 A C DNAJC21 Missense_Mutation p.D312A 0.12 deleterious(0) benign(0.198) TCGA-19-5956-01 5 34945890 34945890 G T DNAJC21 Missense_Mutation p.K389N 0.16 deleterious(0.03) benign(0.066) TCGA-19-5956-01 5 35039555 35039555 G A AGXT2 Missense_Mutation p.T79M 0.33 tolerated(0.24) benign(0.018) TCGA-19-5956-01 5 35047965 35047965 G T AGXT2 Silent p.P11P 0.09 TCGA-19-5956-01 5 35641705 35641705 C T SPEF2 Silent p.L112L 0.48 TCGA-19-5956-01 5 35649489 35649489 C T SPEF2 Silent p.F251F 0.44 TCGA-19-5956-01 5 35654784 35654784 C T SPEF2 Missense_Mutation p.R312W 0.13 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 5 35779306 35779306 C A SPEF2 Missense_Mutation p.F1435L 0.19 deleterious(0) probably_damaging(0.97) TCGA-19-5956-01 5 35876352 35876352 C A IL7R Missense_Mutation p.L382I 0.46 tolerated(0.1) benign(0.022) TCGA-19-5956-01 5 35910111 35910111 C A CAPSL Missense_Mutation p.D128Y 0.14 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 5 35910613 35910613 C T CAPSL Missense_Mutation p.R57Q 0.40 deleterious(0.03) benign(0.055) TCGA-19-5956-01 5 35954274 35954274 C T UGT3A1 3'UTR 0.37 TCGA-19-5956-01 5 35965787 35965787 A G UGT3A1 Missense_Mutation p.S182P 0.39 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 3599424 3599424 G A IRX1 Missense_Mutation p.G121D 0.46 deleterious(0.02) probably_damaging(0.992) TCGA-19-5956-01 5 36039627 36039627 C T UGT3A2 Missense_Mutation p.A343T 0.51 deleterious(0.01) probably_damaging(0.973) TCGA-19-5956-01 5 36049271 36049271 C T UGT3A2 Missense_Mutation p.R188H 0.30 tolerated(0.56) benign(0.001) TCGA-19-5956-01 5 36111272 36111272 C A LMBRD2 Nonsense_Mutation p.E577* 0.26 TCGA-19-5956-01 5 36679882 36679882 C A SLC1A3 Missense_Mutation p.F338L 0.20 tolerated(0.1) probably_damaging(0.999) TCGA-19-5956-01 5 36985783 36985783 G A NIPBL Missense_Mutation p.R834Q 0.23 deleterious_low_confidence(0.05) benign(0.026) TCGA-19-5956-01 5 36986356 36986356 G T NIPBL Missense_Mutation p.R1025I 0.09 deleterious_low_confidence(0.01) benign(0.169) TCGA-19-5956-01 5 37051982 37051982 C A NIPBL Missense_Mutation p.F2352L 0.16 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 5 37064971 37064971 G A NIPBL Missense_Mutation p.A2798T 0.46 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-19-5956-01 5 37164384 37164384 C T C5orf42 Missense_Mutation p.V2527I 0.16 tolerated(1) benign(0) TCGA-19-5956-01 5 37302907 37302907 G T NUP155 Missense_Mutation p.L1141I 0.42 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 5 37697888 37697888 C A WDR70 Intron 0.10 TCGA-19-5956-01 5 37752747 37752747 C T WDR70 3'UTR 0.44 TCGA-19-5956-01 5 38464131 38464131 G T EGFLAM 3'UTR 0.33 TCGA-19-5956-01 5 38482055 38482055 G A LIFR Missense_Mutation p.S979L 0.45 deleterious(0) probably_damaging(0.951) TCGA-19-5956-01 5 38484891 38484891 A C LIFR Nonsense_Mutation p.Y859* 0.13 TCGA-19-5956-01 5 38982074 38982074 G A RICTOR Silent p.I216I 0.08 TCGA-19-5956-01 5 39126200 39126200 A G FYB Missense_Mutation p.S659P 0.17 tolerated(0.23) benign(0.02) TCGA-19-5956-01 5 39127898 39127898 G A FYB Missense_Mutation p.P628S 0.27 deleterious(0.03) possibly_damaging(0.662) TCGA-19-5956-01 5 39202701 39202701 G A FYB Missense_Mutation p.P131L 0.20 tolerated(0.29) possibly_damaging(0.548) TCGA-19-5956-01 5 39315959 39315959 G A C9 Missense_Mutation p.S263F 0.20 deleterious(0.03) benign(0.156) TCGA-19-5956-01 5 39383123 39383123 G T DAB2 Missense_Mutation p.S313Y 0.41 deleterious(0.01) probably_damaging(0.982) TCGA-19-5956-01 5 39388902 39388902 G A DAB2 Missense_Mutation p.S208L 0.15 tolerated(0.82) benign(0) TCGA-19-5956-01 5 40681347 40681347 A C PTGER4 Missense_Mutation p.Q84H 0.10 tolerated(0.1) benign(0.005) TCGA-19-5956-01 5 40691881 40691881 G A PTGER4 Missense_Mutation p.V290M 0.25 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 5 40746986 40746986 T C TTC33 Silent p.K45K 0.11 TCGA-19-5956-01 5 40771881 40771881 C A PRKAA1 Missense_Mutation p.D165Y 0.08 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 5 40841656 40841656 C T CARD6 Missense_Mutation p.R58W 0.40 deleterious(0.05) benign(0.175) TCGA-19-5956-01 5 40853197 40853197 G T CARD6 Missense_Mutation p.R588M 0.21 deleterious(0) possibly_damaging(0.593) TCGA-19-5956-01 5 40962235 40962235 C T C7 Silent p.F570F 0.27 TCGA-19-5956-01 5 41000346 41000346 G T MROH2B Missense_Mutation p.F1486L 0.46 tolerated(0.06) probably_damaging(0.976) TCGA-19-5956-01 5 41000412 41000412 G A MROH2B Silent p.G1464G 0.32 TCGA-19-5956-01 5 41012836 41012836 A C MROH2B Missense_Mutation p.I995S 0.24 deleterious(0) benign(0.012) TCGA-19-5956-01 5 41038922 41038922 G T MROH2B Silent p.L710L 0.27 TCGA-19-5956-01 5 41065589 41065589 G A MROH2B Missense_Mutation p.L69F 0.13 tolerated(0.18) benign(0.346) TCGA-19-5956-01 5 41176650 41176650 G T C6 Nonsense_Mutation p.Y365* 0.10 TCGA-19-5956-01 5 41731805 41731805 C T OXCT1 3'UTR 0.36 TCGA-19-5956-01 5 41842863 41842863 C T OXCT1 Silent p.Q195Q 0.43 TCGA-19-5956-01 5 41934403 41934403 T G FBXO4 Silent p.A297A 0.26 TCGA-19-5956-01 5 41941357 41941357 G A FBXO4 Missense_Mutation p.E380K 0.41 deleterious(0.01) possibly_damaging(0.726) TCGA-19-5956-01 5 42801112 42801112 G T SEPP1 Missense_Mutation p.L286I 0.07 deleterious_low_confidence(0.03) possibly_damaging(0.703) TCGA-19-5956-01 5 43280210 43280210 C A NIM1K Missense_Mutation p.F230L 0.22 deleterious(0.03) possibly_damaging(0.766) TCGA-19-5956-01 5 43297262 43297262 C T HMGCS1 Missense_Mutation p.R194H 0.52 tolerated(0.15) probably_damaging(0.999) TCGA-19-5956-01 5 43298894 43298894 G A HMGCS1 Silent p.F58F 0.45 TCGA-19-5956-01 5 43381992 43381992 G A CCL28 Silent p.H118H 0.22 TCGA-19-5956-01 5 43494658 43494658 G A C5orf34 Missense_Mutation p.P400S 0.22 deleterious(0.05) possibly_damaging(0.501) TCGA-19-5956-01 5 43527541 43527541 G A PAIP1 Silent p.D459D 0.36 TCGA-19-5956-01 5 44813311 44813311 G T MRPS30 Missense_Mutation p.Q319H 0.15 deleterious(0.04) benign(0.29) TCGA-19-5956-01 5 45261948 45261948 G T HCN1 3'UTR 0.39 TCGA-19-5956-01 5 45262227 45262227 G A HCN1 Silent p.P823P 0.16 TCGA-19-5956-01 5 484748 484748 C T SLC9A3 Silent p.S273S 0.51 TCGA-19-5956-01 5 488589 488589 C T SLC9A3 Missense_Mutation p.D173N 0.62 tolerated(0.19) benign(0.015) TCGA-19-5956-01 5 49701620 49701620 C T EMB Missense_Mutation p.C180Y 0.36 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 50689461 50689461 A C ISL1 3'UTR 0.31 TCGA-19-5956-01 5 5191863 5191863 C A ADAMTS16 Missense_Mutation p.L425I 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 52240815 52240815 C T ITGA1 Missense_Mutation p.R1110W 0.38 deleterious(0.01) benign(0.339) TCGA-19-5956-01 5 5235170 5235170 C A ADAMTS16 Missense_Mutation p.L632M 0.23 deleterious(0.04) benign(0.152) TCGA-19-5956-01 5 52379238 52379238 C A ITGA2 Nonsense_Mutation p.Y1071* 0.29 TCGA-19-5956-01 5 52394478 52394478 G A MOCS2 Missense_Mutation p.S174L 0.45 deleterious(0.04) benign(0.147) TCGA-19-5956-01 5 52404437 52404437 T C MOCS2 5'UTR 0.28 TCGA-19-5956-01 5 52778766 52778766 A G FST Missense_Mutation p.T48A 0.10 tolerated(0.68) benign(0.001) TCGA-19-5956-01 5 52954445 52954445 G T NDUFS4 Nonsense_Mutation p.E139* 0.11 TCGA-19-5956-01 5 53814853 53814853 C A SNX18 Silent p.I357I 0.21 TCGA-19-5956-01 5 53815745 53815745 C T SNX18 3'UTR 0.26 TCGA-19-5956-01 5 54398532 54398532 C A GZMA Missense_Mutation p.L8M 0.54 tolerated(0.06) possibly_damaging(0.87) TCGA-19-5956-01 5 54456839 54456839 C T GPX8 Silent p.N74N 0.49 TCGA-19-5956-01 5 54593198 54593198 C A DHX29 Missense_Mutation p.R97I 0.15 deleterious_low_confidence(0.01) possibly_damaging(0.626) TCGA-19-5956-01 5 5462195 5462195 G T KIAA0947 Silent p.T916T 0.10 TCGA-19-5956-01 5 54640967 54640967 C T SKIV2L2 Nonsense_Mutation p.R351* 0.35 TCGA-19-5956-01 5 5464240 5464240 G T KIAA0947 Missense_Mutation p.R1598I 0.27 deleterious(0) probably_damaging(0.975) TCGA-19-5956-01 5 54675016 54675016 A G SKIV2L2 Missense_Mutation p.N682S 0.56 tolerated(0.74) benign(0.06) TCGA-19-5956-01 5 54696072 54696072 A G SKIV2L2 Silent p.K768K 0.21 TCGA-19-5956-01 5 55407468 55407468 T C ANKRD55 Silent p.R369R 0.13 TCGA-19-5956-01 5 55412639 55412639 C T ANKRD55 Intron 0.71 TCGA-19-5956-01 5 56161261 56161261 G A MAP3K1 Missense_Mutation p.R377K 0.07 deleterious(0.01) benign(0.08) TCGA-19-5956-01 5 56181837 56181837 T A MAP3K1 Missense_Mutation p.L1354H 0.50 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 5 56531820 56531820 G A GPBP1 Missense_Mutation p.E154K 0.32 tolerated(0.22) benign(0.076) TCGA-19-5956-01 5 56542200 56542200 G A GPBP1 Silent p.Q191Q 0.51 TCGA-19-5956-01 5 57790546 57790546 C A GAPT Missense_Mutation p.F61L 0.15 tolerated(0.96) possibly_damaging(0.874) TCGA-19-5956-01 5 60188724 60188724 C T ERCC8 Intron 0.68 TCGA-19-5956-01 5 61653974 61653974 G T KIF2A Missense_Mutation p.M240I 0.19 tolerated(0.12) benign(0.002) TCGA-19-5956-01 5 63257156 63257156 C T HTR1A Missense_Mutation p.A131T 0.42 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 64447669 64447669 T A ADAMTS6 Silent p.G1116G 0.09 TCGA-19-5956-01 5 64769482 64769482 T A ADAMTS6 Missense_Mutation p.T7S 0.47 tolerated(0.1) benign(0.002) TCGA-19-5956-01 5 64872843 64872843 C T PPWD1 Silent p.F369F 0.44 TCGA-19-5956-01 5 65288590 65288590 G A ERBB2IP Missense_Mutation p.R15H 0.41 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 65309413 65309413 C A ERBB2IP Silent p.T141T 0.18 TCGA-19-5956-01 5 65350355 65350355 C T ERBB2IP Missense_Mutation p.T1070I 0.45 tolerated(0.39) benign(0.128) TCGA-19-5956-01 5 65350373 65350373 G A ERBB2IP Missense_Mutation p.R1076Q 0.48 deleterious(0.03) probably_damaging(0.998) TCGA-19-5956-01 5 65466710 65466710 G T SREK1 Missense_Mutation p.K473N 0.28 deleterious_low_confidence(0.01) unknown(0) TCGA-19-5956-01 5 66410095 66410095 G A MAST4 Intron 0.56 TCGA-19-5956-01 5 66426054 66426054 C A MAST4 Silent p.R588R 0.23 TCGA-19-5956-01 5 67576819 67576819 C T PIK3R1 Nonsense_Mutation p.R301* 0.24 TCGA-19-5956-01 5 67591288 67591288 G A PIK3R1 Missense_Mutation p.E596K 0.47 tolerated(0.07) benign(0.035) TCGA-19-5956-01 5 68473408 68473408 C A CCNB1 Missense_Mutation p.L418M 0.45 deleterious(0.01) benign(0.427) TCGA-19-5956-01 5 68498750 68498750 C A CENPH Missense_Mutation p.S147Y 0.28 deleterious(0.01) possibly_damaging(0.903) TCGA-19-5956-01 5 68590660 68590660 G A CCDC125 Missense_Mutation p.A295V 0.05 deleterious(0.01) benign(0.001) TCGA-19-5956-01 5 68607014 68607014 T G CCDC125 Missense_Mutation p.K128N 0.17 deleterious(0.03) benign(0.052) TCGA-19-5956-01 5 68662477 68662477 C T TAF9 Intron 0.35 TCGA-19-5956-01 5 68830568 68830568 T C OCLN Silent p.S313S 0.29 TCGA-19-5956-01 5 70308465 70308465 G T NAIP Missense_Mutation p.S93Y 0.12 deleterious(0.04) possibly_damaging(0.467) TCGA-19-5956-01 5 70820040 70820040 G T BDP1 Nonsense_Mutation p.E1888* 0.06 TCGA-19-5956-01 5 70858192 70858192 C T BDP1 Missense_Mutation p.R2530C 0.10 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 5 71516915 71516915 T C MRPS27 Missense_Mutation p.T356A 0.25 tolerated(0.08) probably_damaging(0.921) TCGA-19-5956-01 5 71634515 71634515 C A PTCD2 Missense_Mutation p.L236I 0.31 tolerated(0.4) possibly_damaging(0.589) TCGA-19-5956-01 5 71756441 71756441 G A ZNF366 Missense_Mutation p.H295Y 0.08 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 5 72348279 72348279 C A FCHO2 Missense_Mutation p.S373Y 0.32 deleterious(0) benign(0.211) TCGA-19-5956-01 5 72348300 72348300 C A FCHO2 Missense_Mutation p.S380Y 0.29 deleterious(0) possibly_damaging(0.781) TCGA-19-5956-01 5 72377689 72377689 G T FCHO2 Missense_Mutation p.R687I 0.23 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 5 72858741 72858741 C T ANKRA2 5'UTR 0.56 TCGA-19-5956-01 5 72874899 72874899 C T UTP15 Nonsense_Mutation p.R402* 0.48 TCGA-19-5956-01 5 73144857 73144857 T G ARHGEF28 Missense_Mutation p.I564M 0.50 tolerated(0.1) benign(0.064) TCGA-19-5956-01 5 73931012 73931012 G A ENC1 Silent p.G433G 0.20 TCGA-19-5956-01 5 74016306 74016306 G T HEXB Nonsense_Mutation p.E491* 0.14 TCGA-19-5956-01 5 74130335 74130335 A G FAM169A Missense_Mutation p.F136L 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 74134812 74134812 G T FAM169A Missense_Mutation p.P99H 0.17 deleterious(0.04) probably_damaging(0.978) TCGA-19-5956-01 5 74324729 74324730 - A GCNT4 Frame_Shift_Ins p.Y379Lfs*32 0.25 TCGA-19-5956-01 5 74646984 74646984 G T HMGCR Nonsense_Mutation p.E345* 0.10 TCGA-19-5956-01 5 74651295 74651295 G A HMGCR Missense_Mutation p.E610K 0.12 tolerated(0.09) benign(0.151) TCGA-19-5956-01 5 74880597 74880597 G T POLK Nonsense_Mutation p.G358* 0.56 TCGA-19-5956-01 5 74981170 74981170 G A POC5 Silent p.A423A 0.42 TCGA-19-5956-01 5 75427915 75427915 G A SV2C Missense_Mutation p.G114S 0.55 tolerated(0.96) benign(0.001) TCGA-19-5956-01 5 75913665 75913665 A C F2RL2 Silent p.L289L 0.46 TCGA-19-5956-01 5 75913672 75913672 C T F2RL2 Missense_Mutation p.R287Q 0.21 tolerated(0.2) benign(0.019) TCGA-19-5956-01 5 75989253 75989253 G A IQGAP2 Missense_Mutation p.A1327T 0.17 tolerated(0.06) probably_damaging(0.94) TCGA-19-5956-01 5 75993939 75993939 A G IQGAP2 Missense_Mutation p.Y1445C 0.29 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 76003156 76003156 C A IQGAP2 3'UTR 0.29 TCGA-19-5956-01 5 76029283 76029283 C A F2R Nonsense_Mutation p.C411* 0.10 TCGA-19-5956-01 5 76707547 76707547 G T PDE8B Splice_Site p.X526_splice 0.18 TCGA-19-5956-01 5 77425033 77425033 C T AP3B1 Silent p.P583P 0.13 TCGA-19-5956-01 5 7789859 7789859 C T ADCY2 Silent p.N858N 0.47 TCGA-19-5956-01 5 78322282 78322282 G A DMGDH Missense_Mutation p.R719C 0.43 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 78596624 78596624 C T JMY Missense_Mutation p.R607C 0.21 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 5 7873555 7873555 G A MTRR Missense_Mutation p.D94N 0.51 deleterious(0.04) probably_damaging(0.982) TCGA-19-5956-01 5 79028048 79028048 C T CMYA5 Missense_Mutation p.P1154S 0.31 benign(0.025) TCGA-19-5956-01 5 79029359 79029359 A G CMYA5 Missense_Mutation p.K1591E 0.21 probably_damaging(0.956) TCGA-19-5956-01 5 79733324 79733324 G T ZFYVE16 Missense_Mutation p.D274Y 0.15 deleterious(0) possibly_damaging(0.759) TCGA-19-5956-01 5 79773054 79773054 G T ZFYVE16 Missense_Mutation p.G1493V 0.50 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 80366310 80366310 G T RASGRF2 Splice_Site p.X182_splice 0.17 TCGA-19-5956-01 5 81460310 81460310 C A ATG10 Silent p.S103S 0.09 TCGA-19-5956-01 5 82554384 82554384 C A XRCC4 Missense_Mutation p.L261I 0.60 tolerated(0.32) benign(0.162) TCGA-19-5956-01 5 82836352 82836352 G A VCAN Silent p.V2510V 0.19 TCGA-19-5956-01 5 82838070 82838070 C T VCAN Missense_Mutation p.T3083M 0.12 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 5 82868369 82868369 G T VCAN Missense_Mutation p.K3290N 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 5 83360580 83360580 A G EDIL3 Silent p.Y297Y 0.22 TCGA-19-5956-01 5 83433131 83433131 T A EDIL3 Missense_Mutation p.I133L 0.27 tolerated(0.33) benign(0.004) TCGA-19-5956-01 5 83549921 83549921 A G EDIL3 Silent p.C59C 0.48 TCGA-19-5956-01 5 837507 837507 G A ZDHHC11 Silent p.Y291Y 0.39 TCGA-19-5956-01 5 86668007 86668007 C T RASA1 Missense_Mutation p.R591C 0.46 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 5 86695315 86695315 T G CCNH Missense_Mutation p.R256S 0.17 deleterious(0.01) benign(0.012) TCGA-19-5956-01 5 87536677 87536677 C A TMEM161B Missense_Mutation p.K20N 0.21 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 5 89757279 89757279 C T MBLAC2 Missense_Mutation p.R182Q 0.19 tolerated(0.45) benign(0.005) TCGA-19-5956-01 5 89979523 89979523 G A GPR98 Missense_Mutation p.A1929T 0.30 probably_damaging(0.959) TCGA-19-5956-01 5 90007127 90007127 C A GPR98 Silent p.I3010I 0.38 TCGA-19-5956-01 5 904309 904309 G T TRIP13 Missense_Mutation p.Q194H 0.10 deleterious(0.04) possibly_damaging(0.573) TCGA-19-5956-01 5 9044572 9044572 G A SEMA5A Silent p.I1006I 0.42 TCGA-19-5956-01 5 907253 907253 A G TRIP13 Missense_Mutation p.Y206C 0.48 deleterious(0.04) benign(0.072) TCGA-19-5956-01 5 9119118 9119118 G A SEMA5A Silent p.R639R 0.14 TCGA-19-5956-01 5 9119120 9119120 G A SEMA5A Missense_Mutation p.R639C 0.46 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 5 914655 914655 G A TRIP13 Missense_Mutation p.V366M 0.28 tolerated(0.22) benign(0.018) TCGA-19-5956-01 5 93410452 93410452 G T FAM172A Missense_Mutation p.S2Y 0.61 tolerated_low_confidence(1) unknown(0) TCGA-19-5956-01 5 94134810 94134810 C A MCTP1 Nonsense_Mutation p.E822* 0.29 TCGA-19-5956-01 5 94620049 94620049 C A MCTP1 Missense_Mutation p.R77S 0.47 tolerated_low_confidence(0.06) benign(0.009) TCGA-19-5956-01 5 94860254 94860254 T C TTC37 Missense_Mutation p.Y456C 0.27 deleterious(0.01) benign(0.119) TCGA-19-5956-01 5 94872577 94872577 A G TTC37 Missense_Mutation p.I232T 0.10 tolerated(0.06) benign(0.001) TCGA-19-5956-01 5 94922336 94922336 C A ARSK Missense_Mutation p.S257Y 0.33 deleterious(0.03) probably_damaging(0.998) TCGA-19-5956-01 5 95091314 95091314 C T RHOBTB3 Silent p.I299I 0.48 TCGA-19-5956-01 5 95103866 95103866 T G RHOBTB3 Missense_Mutation p.I426M 0.06 deleterious(0) possibly_damaging(0.901) TCGA-19-5956-01 5 95255203 95255203 A C ELL2 Missense_Mutation p.F81C 0.10 deleterious(0) possibly_damaging(0.65) TCGA-19-5956-01 5 95730639 95730639 G A PCSK1 Missense_Mutation p.R605C 0.09 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 5 95746489 95746489 C T PCSK1 Missense_Mutation p.D362N 0.06 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 5 96078437 96078437 C T CAST Missense_Mutation p.R352C 0.36 deleterious(0.01) benign(0.234) TCGA-19-5956-01 5 96232513 96232513 G T ERAP2 Missense_Mutation p.K483N 0.31 tolerated(0.07) benign(0.029) TCGA-19-5956-01 5 96315361 96315361 G T LNPEP Missense_Mutation p.S180I 0.07 tolerated(0.38) benign(0.002) TCGA-19-5956-01 6 100896124 100896124 C A SIM1 Missense_Mutation p.A250S 0.29 tolerated(0.39) benign(0.136) TCGA-19-5956-01 6 101109901 101109901 T C ASCC3 Silent p.T828T 0.21 TCGA-19-5956-01 6 102069925 102069925 A G GRIK2 Missense_Mutation p.N73D 0.46 tolerated(0.08) probably_damaging(0.991) TCGA-19-5956-01 6 102130469 102130469 C A GRIK2 Silent p.I255I 0.16 TCGA-19-5956-01 6 10419659 10419659 C A TFAP2A 5'Flank 0.24 TCGA-19-5956-01 6 10430013 10430013 C T LINC00518 RNA 0.49 TCGA-19-5956-01 6 10430079 10430079 C T LINC00518 RNA 0.27 TCGA-19-5956-01 6 105198348 105198348 C T HACE1 Splice_Site p.X738_splice 0.48 TCGA-19-5956-01 6 105219890 105219890 G A HACE1 Missense_Mutation p.R642W 0.38 deleterious(0) possibly_damaging(0.87) TCGA-19-5956-01 6 105224892 105224892 C T HACE1 Missense_Mutation p.G591D 0.27 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 105233129 105233129 T G HACE1 Missense_Mutation p.K380N 0.28 deleterious(0.01) benign(0.109) TCGA-19-5956-01 6 105291106 105291106 G T HACE1 Missense_Mutation p.L132I 0.10 deleterious(0.02) possibly_damaging(0.672) TCGA-19-5956-01 6 10557572 10557572 C A GCNT2 Intron 0.39 TCGA-19-5956-01 6 105609531 105609531 A C POPDC3 Missense_Mutation p.F85C 0.12 tolerated(0.07) possibly_damaging(0.784) TCGA-19-5956-01 6 105725825 105725825 G T PREP 3'UTR 0.58 TCGA-19-5956-01 6 105736695 105736695 G A PREP Silent p.G464G 0.34 TCGA-19-5956-01 6 10586594 10586594 C A GCNT2 Intron 0.44 TCGA-19-5956-01 6 10587049 10587049 T G GCNT2 Intron 0.06 TCGA-19-5956-01 6 106967787 106967787 C A AIM1 Missense_Mutation p.L494I 0.28 tolerated_low_confidence(0.07) benign(0.02) TCGA-19-5956-01 6 107103543 107103543 C T QRSL1 Nonsense_Mutation p.R366* 0.46 TCGA-19-5956-01 6 107372433 107372433 C A C6orf203 Missense_Mutation p.S244Y 0.18 tolerated(1) possibly_damaging(0.667) TCGA-19-5956-01 6 107390971 107390971 C T BEND3 Missense_Mutation p.R475H 0.51 tolerated(0.25) probably_damaging(1) TCGA-19-5956-01 6 107956459 107956459 C T SOBP Missense_Mutation p.P804L 0.11 tolerated(0.07) benign(0.095) TCGA-19-5956-01 6 108677989 108677989 G A LACE1 Missense_Mutation p.E205K 0.16 tolerated(0.09) benign(0.005) TCGA-19-5956-01 6 10875103 10875103 C A GCM2 Missense_Mutation p.D216Y 0.18 deleterious(0.03) benign(0.177) TCGA-19-5956-01 6 10907891 10907891 G T SYCP2L Nonsense_Mutation p.E265* 0.11 TCGA-19-5956-01 6 109319727 109319727 C A SESN1 Nonsense_Mutation p.E321* 0.36 TCGA-19-5956-01 6 10955447 10955447 C T SYCP2L Missense_Mutation p.P685S 0.42 tolerated(0.5) benign(0.004) TCGA-19-5956-01 6 109748161 109748161 A C PPIL6 Missense_Mutation p.F174V 0.36 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 109769092 109769092 G A MICAL1 Nonsense_Mutation p.R644* 0.47 TCGA-19-5956-01 6 109770988 109770988 T C MICAL1 Splice_Site p.X436_splice 0.21 TCGA-19-5956-01 6 10990003 10990003 C T ELOVL2 Missense_Mutation p.G233D 0.42 tolerated(0.22) probably_damaging(1) TCGA-19-5956-01 6 110112578 110112578 G T FIG4 Splice_Site p.X727_splice 0.42 TCGA-19-5956-01 6 110714306 110714306 A G DDO Missense_Mutation p.L261P 0.05 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 6 110777706 110777706 A G SLC22A16 Intron 0.49 TCGA-19-5956-01 6 111634676 111634676 A G REV3L Missense_Mutation p.V2828A 0.08 deleterious(0) probably_damaging(0.946) TCGA-19-5956-01 6 111685182 111685182 C A REV3L Splice_Site p.X2252_splice 0.18 TCGA-19-5956-01 6 111686548 111686548 C A REV3L Splice_Site p.X2225_splice 0.48 TCGA-19-5956-01 6 111689108 111689108 C A REV3L Missense_Mutation p.Q1961H 0.13 tolerated(0.34) possibly_damaging(0.867) TCGA-19-5956-01 6 111694407 111694407 C A REV3L Missense_Mutation p.W1717C 0.06 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-19-5956-01 6 111701326 111701326 C T REV3L Missense_Mutation p.R438H 0.21 tolerated(0.64) benign(0) TCGA-19-5956-01 6 111709117 111709117 C A REV3L Splice_Site p.X316_splice 0.10 TCGA-19-5956-01 6 111983005 111983005 C A FYN Missense_Mutation p.Q517H 0.12 deleterious(0.04) probably_damaging(0.999) TCGA-19-5956-01 6 112496575 112496575 G A LAMA4 Missense_Mutation p.R433C 0.08 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 6 116264282 116264282 C T FRK Missense_Mutation p.E403K 0.47 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 116441866 116441866 A G COL10A1 Silent p.S471S 0.16 TCGA-19-5956-01 6 116542303 116542303 C T NT5DC1 Nonsense_Mutation p.R206* 0.09 TCGA-19-5956-01 6 116720574 116720574 C T DSE Missense_Mutation p.A54V 0.43 tolerated(0.16) benign(0.104) TCGA-19-5956-01 6 116752225 116752225 C T DSE Missense_Mutation p.A260V 0.17 tolerated(0.18) probably_damaging(0.997) TCGA-19-5956-01 6 116752309 116752309 C T DSE Missense_Mutation p.P288L 0.12 tolerated(0.22) possibly_damaging(0.864) TCGA-19-5956-01 6 116837150 116837150 T C FAM26E Nonstop_Mutation p.*310Qext*6 0.54 TCGA-19-5956-01 6 116914373 116914373 G T RWDD1 3'UTR 0.27 TCGA-19-5956-01 6 116943935 116943935 G T RSPH4A Missense_Mutation p.D231Y 0.58 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 6 117013488 117013488 G T KPNA5 Missense_Mutation p.M91I 0.13 tolerated(0.07) benign(0.012) TCGA-19-5956-01 6 117019904 117019904 A G KPNA5 Silent p.P126P 0.11 TCGA-19-5956-01 6 117243289 117243289 C A RFX6 Missense_Mutation p.T471N 0.11 tolerated(0.14) benign(0.001) TCGA-19-5956-01 6 117244370 117244370 A G RFX6 Missense_Mutation p.N513S 0.21 deleterious(0.05) benign(0.418) TCGA-19-5956-01 6 117248521 117248521 C A RFX6 Missense_Mutation p.F739L 0.13 tolerated_low_confidence(0.26) benign(0.001) TCGA-19-5956-01 6 117632238 117632238 A G ROS1 Missense_Mutation p.C2060R 0.39 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 6 117658491 117658491 C A ROS1 Nonsense_Mutation p.E1698* 0.11 TCGA-19-5956-01 6 117710577 117710577 C T ROS1 Silent p.S565S 0.23 TCGA-19-5956-01 6 117718078 117718078 C A ROS1 Missense_Mutation p.R260M 0.27 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 6 117825021 117825021 C T DCBLD1 Silent p.C68C 0.44 TCGA-19-5956-01 6 117859863 117859863 G A DCBLD1 Missense_Mutation p.D281N 0.30 tolerated(0.05) benign(0.011) TCGA-19-5956-01 6 117866671 117866671 C T DCBLD1 Missense_Mutation p.A509V 0.46 tolerated(0.84) probably_damaging(0.971) TCGA-19-5956-01 6 118556698 118556698 C T SLC35F1 Nonsense_Mutation p.R126* 0.57 TCGA-19-5956-01 6 119295708 119295708 C A FAM184A Nonsense_Mutation p.E934* 0.23 TCGA-19-5956-01 6 119670088 119670088 A C MAN1A1 Missense_Mutation p.F48C 0.33 deleterious(0.03) probably_damaging(0.928) TCGA-19-5956-01 6 12120319 12120319 G T HIVEP1 Missense_Mutation p.Q97H 0.38 tolerated(0.23) benign(0.013) TCGA-19-5956-01 6 12121239 12121240 - A HIVEP1 Frame_Shift_Ins p.Y406Ifs*4 0.33 TCGA-19-5956-01 6 12121695 12121695 C T HIVEP1 Missense_Mutation p.A556V 0.13 tolerated(0.84) benign(0.027) TCGA-19-5956-01 6 12123427 12123427 C A HIVEP1 Silent p.I1133I 0.14 TCGA-19-5956-01 6 12124329 12124329 C T HIVEP1 Missense_Mutation p.S1434F 0.17 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 12124389 12124389 C A HIVEP1 Missense_Mutation p.T1454N 0.25 tolerated(0.57) benign(0.049) TCGA-19-5956-01 6 12125642 12125642 C T HIVEP1 Nonsense_Mutation p.R1872* 0.47 TCGA-19-5956-01 6 12131102 12131102 G A HIVEP1 Silent p.K2104K 0.45 TCGA-19-5956-01 6 121434305 121434305 A G TBC1D32 Silent p.S1024S 0.13 TCGA-19-5956-01 6 121600336 121600336 C A TBC1D32 Missense_Mutation p.R555I 0.30 deleterious(0.04) possibly_damaging(0.897) TCGA-19-5956-01 6 121625975 121625975 C T TBC1D32 Missense_Mutation p.R232Q 0.29 tolerated(0.1) possibly_damaging(0.657) TCGA-19-5956-01 6 121768220 121768220 G A GJA1 Missense_Mutation p.R76H 0.46 deleterious(0) probably_damaging(0.975) TCGA-19-5956-01 6 122753092 122753092 C T HSF2 Silent p.T446T 0.26 TCGA-19-5956-01 6 123319069 123319069 G A CLVS2 Silent p.T49T 0.27 TCGA-19-5956-01 6 123539774 123539774 G T TRDN Missense_Mutation p.S721Y 0.29 deleterious_low_confidence(0) probably_damaging(0.986) TCGA-19-5956-01 6 125569519 125569519 G A TPD52L1 Missense_Mutation p.G126R 0.10 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 6 126210266 126210266 G T NCOA7 Nonsense_Mutation p.G356* 0.11 TCGA-19-5956-01 6 126236491 126236491 G T NCOA7 Missense_Mutation p.L703F 0.20 deleterious(0) probably_damaging(0.982) TCGA-19-5956-01 6 126320760 126320760 G A TRMT11 Splice_Site p.X227_splice 0.38 TCGA-19-5956-01 6 127610929 127610929 C A ECHDC1 3'UTR 0.21 TCGA-19-5956-01 6 127765282 127765282 G T KIAA0408 Missense_Mutation p.S686Y 0.47 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 6 127767558 127767558 T C KIAA0408 Missense_Mutation p.T636A 0.54 tolerated(0.4) benign(0.067) TCGA-19-5956-01 6 127804057 127804057 C T SOGA3 Splice_Site p.X519_splice 0.37 TCGA-19-5956-01 6 128134693 128134693 G A THEMIS Missense_Mutation p.L365F 0.23 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 6 128150694 128150694 C T THEMIS Silent p.T212T 0.31 TCGA-19-5956-01 6 128222008 128222008 G A THEMIS Nonsense_Mutation p.Q24* 0.38 TCGA-19-5956-01 6 128222054 128222054 G A THEMIS Silent p.F8F 0.19 TCGA-19-5956-01 6 128291311 128291311 G T PTPRK 3'UTR 0.30 TCGA-19-5956-01 6 128316620 128316620 G A PTPRK Missense_Mutation p.A944V 0.10 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 6 129381006 129381006 T C LAMA2 Missense_Mutation p.Y121H 0.22 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 6 129725078 129725078 G T LAMA2 Missense_Mutation p.D1947Y 0.62 deleterious(0.04) benign(0.139) TCGA-19-5956-01 6 129725101 129725101 A G LAMA2 Silent p.K1954K 0.10 TCGA-19-5956-01 6 129929198 129929198 C T ARHGAP18 Splice_Site p.X375_splice 0.56 TCGA-19-5956-01 6 129937417 129937417 C T ARHGAP18 Silent p.A328A 0.22 TCGA-19-5956-01 6 129963146 129963146 T C ARHGAP18 Missense_Mutation p.Y44C 0.10 deleterious(0.04) benign(0.043) TCGA-19-5956-01 6 130370905 130370905 G A L3MBTL3 Silent p.P73P 0.28 TCGA-19-5956-01 6 130762202 130762202 C A TMEM200A Missense_Mutation p.S212Y 0.14 deleterious(0.02) possibly_damaging(0.522) TCGA-19-5956-01 6 130762435 130762435 T G TMEM200A Missense_Mutation p.L290V 0.10 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 6 131215523 131215523 C A EPB41L2 Missense_Mutation p.R483I 0.20 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 6 131225681 131225681 C T EPB41L2 Splice_Site p.X285_splice 0.10 TCGA-19-5956-01 6 131276371 131276371 C A EPB41L2 Missense_Mutation p.E193D 0.23 tolerated(0.05) probably_damaging(0.965) TCGA-19-5956-01 6 131904541 131904541 C A ARG1 Missense_Mutation p.P246T 0.51 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 131946065 131946065 C T MED23 Missense_Mutation p.R75K 0.52 tolerated(0.28) probably_damaging(0.946) TCGA-19-5956-01 6 131999005 131999005 T A ENPP3 Intron 0.22 TCGA-19-5956-01 6 131999024 131999024 A G ENPP3 Missense_Mutation p.M319V 0.33 tolerated(0.11) benign(0.002) TCGA-19-5956-01 6 132022358 132022358 G C OR2A4 Missense_Mutation p.L62V 0.06 deleterious(0) probably_damaging(0.913) TCGA-19-5956-01 6 132045206 132045206 G A ENPP3 Silent p.Q591Q 0.42 TCGA-19-5956-01 6 132059230 132059230 G T ENPP3 Missense_Mutation p.V743L 0.16 tolerated(0.18) benign(0.052) TCGA-19-5956-01 6 132910635 132910635 G A TAAR5 Missense_Mutation p.A64V 0.07 tolerated(0.17) benign(0.007) TCGA-19-5956-01 6 133005599 133005599 C T VNN1 Missense_Mutation p.G412S 0.23 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 13316852 13316852 C T TBC1D7 Missense_Mutation p.R157H 0.49 tolerated(0.15) benign(0.135) TCGA-19-5956-01 6 13321159 13321159 C T TBC1D7 Missense_Mutation p.R121Q 0.43 tolerated(0.29) benign(0.001) TCGA-19-5956-01 6 133783489 133783489 C A EYA4 Missense_Mutation p.L152I 0.21 tolerated(0.06) probably_damaging(0.997) TCGA-19-5956-01 6 133836529 133836529 C A EYA4 Silent p.S524S 0.41 TCGA-19-5956-01 6 134349747 134349747 C A SLC2A12 Missense_Mutation p.D406Y 0.11 deleterious(0.01) benign(0.285) TCGA-19-5956-01 6 135644402 135644402 C A AHI1 Missense_Mutation p.D1076Y 0.23 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 135811799 135811800 - T AHI1 Frame_Shift_Ins p.L33Tfs*9 0.12 TCGA-19-5956-01 6 13612148 13612148 G A SIRT5 3'UTR 0.43 TCGA-19-5956-01 6 13639899 13639899 T C RANBP9 Missense_Mutation p.Y474C 0.52 deleterious(0.01) benign(0.028) TCGA-19-5956-01 6 136594246 136594246 A C BCLAF1 Silent p.T644T 0.14 TCGA-19-5956-01 6 136597624 136597624 C A BCLAF1 Missense_Mutation p.V347L 0.14 tolerated(0.3) benign(0.124) TCGA-19-5956-01 6 136599068 136599068 G A BCLAF1 Silent p.G317G 0.28 TCGA-19-5956-01 6 137018439 137018439 C A MAP3K5 Missense_Mutation p.R298I 0.21 deleterious(0) probably_damaging(0.949) TCGA-19-5956-01 6 137466726 137466726 G T IL22RA2 3'UTR 0.19 TCGA-19-5956-01 6 137519557 137519557 T G IFNGR1 Missense_Mutation p.N361H 0.32 tolerated(0.22) benign(0.004) TCGA-19-5956-01 6 138192645 138192645 C T TNFAIP3 Missense_Mutation p.A94V 0.54 deleterious(0) possibly_damaging(0.49) TCGA-19-5956-01 6 138196933 138196933 C T TNFAIP3 Missense_Mutation p.L199F 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 138539139 138539139 G A PBOV1 Missense_Mutation p.P132S 0.57 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 6 138539287 138539287 T C PBOV1 Silent p.T82T 0.08 TCGA-19-5956-01 6 139487874 139487874 G A HECA Missense_Mutation p.R242Q 0.45 tolerated(0.07) probably_damaging(0.99) TCGA-19-5956-01 6 139488170 139488170 G A HECA Missense_Mutation p.V341M 0.19 deleterious(0.01) possibly_damaging(0.759) TCGA-19-5956-01 6 139488260 139488260 G A HECA Missense_Mutation p.D371N 0.47 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 6 142397074 142397074 T G NMBR Missense_Mutation p.E295A 0.11 tolerated(0.23) benign(0.43) TCGA-19-5956-01 6 142718813 142718813 C A GPR126 Silent p.I496I 0.16 TCGA-19-5956-01 6 142740999 142740999 C T GPR126 Missense_Mutation p.A1026V 0.45 tolerated(1) benign(0.028) TCGA-19-5956-01 6 143080997 143080997 G A HIVEP2 Missense_Mutation p.A2143V 0.56 tolerated(0.14) benign(0.355) TCGA-19-5956-01 6 143795971 143795971 G T PEX3 Nonsense_Mutation p.E266* 0.11 TCGA-19-5956-01 6 143810395 143810395 C A PEX3 3'UTR 0.39 TCGA-19-5956-01 6 144086439 144086439 T C PHACTR2 Missense_Mutation p.S246P 0.12 deleterious(0.04) possibly_damaging(0.585) TCGA-19-5956-01 6 144263295 144263295 C A PLAGL1 Missense_Mutation p.D220Y 0.11 deleterious(0) possibly_damaging(0.85) TCGA-19-5956-01 6 144263439 144263439 G A PLAGL1 Nonsense_Mutation p.R172* 0.11 TCGA-19-5956-01 6 144760001 144760001 A C UTRN Missense_Mutation p.K454N 0.19 deleterious(0.02) benign(0.005) TCGA-19-5956-01 6 144772609 144772609 G A UTRN Missense_Mutation p.E726K 0.16 deleterious(0.04) benign(0.069) TCGA-19-5956-01 6 144872125 144872125 C T UTRN Missense_Mutation p.R2279C 0.20 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 144872142 144872142 T C UTRN Silent p.D2284D 0.12 TCGA-19-5956-01 6 144898290 144898290 C T UTRN Missense_Mutation p.R2449C 0.36 tolerated(0.18) benign(0.014) TCGA-19-5956-01 6 145051502 145051502 C T UTRN Missense_Mutation p.R2607W 0.12 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 6 145948721 145948721 G T EPM2A Missense_Mutation p.A276D 0.10 deleterious(0.01) possibly_damaging(0.888) TCGA-19-5956-01 6 146121292 146121292 G A FBXO30 Missense_Mutation p.L730F 0.26 deleterious(0.05) probably_damaging(0.972) TCGA-19-5956-01 6 146264799 146264799 C T SHPRH Missense_Mutation p.R573H 0.15 tolerated_low_confidence(0.23) benign(0.009) TCGA-19-5956-01 6 148840796 148840796 G A SASH1 Missense_Mutation p.E326K 0.52 tolerated_low_confidence(0.1) benign(0.045) TCGA-19-5956-01 6 149285792 149285792 C A UST Intron 0.47 TCGA-19-5956-01 6 150048298 150048298 C A NUP43 Missense_Mutation p.S317I 0.34 tolerated(0.65) benign(0.001) TCGA-19-5956-01 6 150063601 150063601 C A NUP43 Nonsense_Mutation p.E143* 0.27 TCGA-19-5956-01 6 150123483 150123483 G T PCMT1 Missense_Mutation p.D276Y 0.26 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 6 150289836 150289836 C A ULBP1 Missense_Mutation p.P60H 0.10 tolerated(0.48) possibly_damaging(0.796) TCGA-19-5956-01 6 151054733 151054733 G A PLEKHG1 5'UTR 0.28 TCGA-19-5956-01 6 151054823 151054823 G A PLEKHG1 Silent p.E2E 0.13 TCGA-19-5956-01 6 151726264 151726264 G A RMND1 3'UTR 0.50 TCGA-19-5956-01 6 151726941 151726941 C T RMND1 Missense_Mutation p.E411K 0.09 deleterious(0) possibly_damaging(0.902) TCGA-19-5956-01 6 151779567 151779567 T C C6orf211 Silent p.D84D 0.60 TCGA-19-5956-01 6 151894594 151894594 G T CCDC170 Nonsense_Mutation p.E354* 0.14 TCGA-19-5956-01 6 152454608 152454608 G T SYNE1 Missense_Mutation p.L8602M 0.16 probably_damaging(0.998) TCGA-19-5956-01 6 152472794 152472794 G A SYNE1 Missense_Mutation p.T8115I 0.39 possibly_damaging(0.574) TCGA-19-5956-01 6 152501361 152501361 C A SYNE1 Missense_Mutation p.K7790N 0.15 probably_damaging(0.998) TCGA-19-5956-01 6 152540164 152540164 G T SYNE1 Missense_Mutation p.L7340I 0.09 probably_damaging(0.934) TCGA-19-5956-01 6 152576737 152576737 A C SYNE1 Missense_Mutation p.F6417V 0.06 benign(0.021) TCGA-19-5956-01 6 152674404 152674404 C T SYNE1 Silent p.T3749T 0.31 TCGA-19-5956-01 6 152737580 152737580 C T SYNE1 Missense_Mutation p.E1998K 0.26 probably_damaging(0.998) TCGA-19-5956-01 6 152809623 152809623 T G SYNE1 Missense_Mutation p.I319L 0.53 benign(0.001) TCGA-19-5956-01 6 153043437 153043437 A G MYCT1 3'UTR 0.17 TCGA-19-5956-01 6 153315751 153315751 A C MTRF1L Missense_Mutation p.F195C 0.18 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 6 153332854 153332854 A G RGS17 Missense_Mutation p.L163P 0.10 deleterious(0) possibly_damaging(0.89) TCGA-19-5956-01 6 153345426 153345426 C A RGS17 Missense_Mutation p.D139Y 0.17 deleterious(0) probably_damaging(0.974) TCGA-19-5956-01 6 154521162 154521162 C T IPCEF1 Missense_Mutation p.A184T 0.45 tolerated(0.17) possibly_damaging(0.46) TCGA-19-5956-01 6 15496881 15496881 G A JARID2 Silent p.P475P 0.64 TCGA-19-5956-01 6 155578056 155578056 A C TIAM2 Missense_Mutation p.K1636T 0.19 deleterious_low_confidence(0) possibly_damaging(0.732) TCGA-19-5956-01 6 157527627 157527627 C T ARID1B Silent p.F1784F 0.38 TCGA-19-5956-01 6 157963680 157963680 C A ZDHHC14 Missense_Mutation p.F103L 0.27 tolerated(1) benign(0.002) TCGA-19-5956-01 6 158919772 158919772 A C TULP4 Missense_Mutation p.I648L 0.07 tolerated_low_confidence(0.11) benign(0.024) TCGA-19-5956-01 6 158927716 158927716 G A TULP4 Missense_Mutation p.R1541H 0.23 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 6 158927873 158927873 C T TULP4 3'UTR 0.33 TCGA-19-5956-01 6 159028298 159028298 G A TMEM181 Missense_Mutation p.R336Q 0.16 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 6 159029725 159029725 A C TMEM181 Missense_Mutation p.K417T 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 159420693 159420693 G A RSPH3 Missense_Mutation p.R106W 0.28 deleterious_low_confidence(0.05) possibly_damaging(0.549) TCGA-19-5956-01 6 160106002 160106002 G A SOD2 Missense_Mutation p.T136M 0.24 deleterious(0.03) benign(0.336) TCGA-19-5956-01 6 160197275 160197275 C T ACAT2 Missense_Mutation p.T243M 0.44 deleterious(0.02) benign(0.032) TCGA-19-5956-01 6 160199761 160199761 C T ACAT2 Missense_Mutation p.T365I 0.16 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 6 160201049 160201049 G A TCP1 Missense_Mutation p.R390C 0.25 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 160225034 160225034 A G PNLDC1 Missense_Mutation p.T85A 0.46 tolerated(0.13) possibly_damaging(0.657) TCGA-19-5956-01 6 160499277 160499277 C T IGF2R Silent p.F1787F 0.22 TCGA-19-5956-01 6 160671651 160671651 G A SLC22A2 Missense_Mutation p.T201M 0.45 tolerated(0.12) benign(0.16) TCGA-19-5956-01 6 160858171 160858171 C T SLC22A3 Nonsense_Mutation p.R406* 0.10 TCGA-19-5956-01 6 160905107 160905107 G T LPAL2 RNA 0.23 TCGA-19-5956-01 6 16146979 16146979 C A MYLIP Silent p.I445I 0.47 TCGA-19-5956-01 6 161470796 161470796 G A MAP3K4 Missense_Mutation p.E498K 0.38 tolerated(0.92) benign(0.047) TCGA-19-5956-01 6 161470871 161470871 A G MAP3K4 Missense_Mutation p.T523A 0.40 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 6 161512458 161512458 C T MAP3K4 Silent p.R1007R 0.25 TCGA-19-5956-01 6 161529778 161529778 C T MAP3K4 Nonsense_Mutation p.R1375* 0.09 TCGA-19-5956-01 6 16274727 16274727 G A GMPR Missense_Mutation p.G183S 0.10 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 6 165711541 165711541 G A C6orf118 Missense_Mutation p.A329V 0.16 tolerated(0.07) possibly_damaging(0.642) TCGA-19-5956-01 6 167275599 167275599 T C RPS6KA2 Missense_Mutation p.I20M 0.06 tolerated_low_confidence(0.21) benign(0.019) TCGA-19-5956-01 6 167436109 167436109 G T FGFR1OP Missense_Mutation p.E264D 0.23 tolerated(0.11) benign(0.033) TCGA-19-5956-01 6 167717565 167717565 C A UNC93A Missense_Mutation p.L262M 0.10 tolerated(0.21) possibly_damaging(0.764) TCGA-19-5956-01 6 167719531 167719531 C T UNC93A Silent p.Y323Y 0.46 TCGA-19-5956-01 6 167754983 167754983 C T TTLL2 Missense_Mutation p.S532F 0.07 tolerated(0.72) benign(0.101) TCGA-19-5956-01 6 168315397 168315397 A C MLLT4 Missense_Mutation p.S753R 0.17 tolerated(0.23) benign(0.255) TCGA-19-5956-01 6 169053863 169053863 G A SMOC2 Missense_Mutation p.G425S 0.37 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 169620302 169620302 C T THBS2 Missense_Mutation p.E1168K 0.14 tolerated(0.17) probably_damaging(1) TCGA-19-5956-01 6 169634905 169634905 C T THBS2 Silent p.E525E 0.49 TCGA-19-5956-01 6 170034622 170034622 C A WDR27 Splice_Site p.X668_splice 0.17 TCGA-19-5956-01 6 170116086 170116086 G A PHF10 Missense_Mutation p.R170C 0.56 deleterious(0) possibly_damaging(0.794) TCGA-19-5956-01 6 170116137 170116137 C A PHF10 Nonsense_Mutation p.E153* 0.46 TCGA-19-5956-01 6 170140320 170140320 G A TCTE3 Silent p.Y186Y 0.16 TCGA-19-5956-01 6 170153982 170153982 C T ERMARD Missense_Mutation p.T10I 0.28 deleterious(0) possibly_damaging(0.807) TCGA-19-5956-01 6 170179283 170179283 G T ERMARD Missense_Mutation p.R582I 0.23 deleterious(0.01) possibly_damaging(0.553) TCGA-19-5956-01 6 170594696 170594696 T C DLL1 Missense_Mutation p.N275D 0.39 tolerated(0.07) benign(0.305) TCGA-19-5956-01 6 170599187 170599187 G A DLL1 Missense_Mutation p.A14V 0.61 tolerated(1) benign(0.015) TCGA-19-5956-01 6 170627478 170627478 G T FAM120B Missense_Mutation p.D334Y 0.19 deleterious(0.01) possibly_damaging(0.847) TCGA-19-5956-01 6 170628072 170628072 T G FAM120B Missense_Mutation p.L532V 0.15 tolerated_low_confidence(0.18) benign(0.044) TCGA-19-5956-01 6 170873659 170873659 G A TBP Missense_Mutation p.G175D 0.12 tolerated(0.58) benign(0.103) TCGA-19-5956-01 6 17602861 17602861 G T FAM8A1 Missense_Mutation p.M251I 0.09 tolerated(0.28) benign(0.007) TCGA-19-5956-01 6 17608592 17608592 C T FAM8A1 3'UTR 0.39 TCGA-19-5956-01 6 18121711 18121711 G T NHLRC1 Missense_Mutation p.S376Y 0.53 deleterious(0) possibly_damaging(0.681) TCGA-19-5956-01 6 18200695 18200695 G T KDM1B Missense_Mutation p.R284I 0.45 deleterious_low_confidence(0.01) unknown(0) TCGA-19-5956-01 6 20102522 20102522 C A MBOAT1 Missense_Mutation p.D495Y 0.33 deleterious(0) possibly_damaging(0.707) TCGA-19-5956-01 6 20481473 20481473 C T E2F3 Missense_Mutation p.T181M 0.24 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 6 20490617 20490617 G A E2F3 Missense_Mutation p.D452N 0.10 deleterious(0.03) possibly_damaging(0.566) TCGA-19-5956-01 6 20548856 20548856 G A CDKAL1 Missense_Mutation p.R69Q 0.55 tolerated(0.1) benign(0.354) TCGA-19-5956-01 6 21231213 21231213 C T CDKAL1 Silent p.S561S 0.19 TCGA-19-5956-01 6 22287616 22287616 G T PRL 3'UTR 0.19 TCGA-19-5956-01 6 22569699 22569699 G A HDGFL1 5'Flank 0.55 TCGA-19-5956-01 6 24178686 24178686 G A DCDC2 Missense_Mutation p.R400C 0.49 deleterious_low_confidence(0.05) benign(0.163) TCGA-19-5956-01 6 24302249 24302249 C A DCDC2 Missense_Mutation p.R124S 0.41 deleterious(0) possibly_damaging(0.611) TCGA-19-5956-01 6 24651110 24651110 C T TDP2 Missense_Mutation p.R332Q 0.45 tolerated(1) benign(0.007) TCGA-19-5956-01 6 24701894 24701894 A C ACOT13 3'UTR 0.48 TCGA-19-5956-01 6 24850926 24850926 G A FAM65B Missense_Mutation p.R233W 0.49 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 24865548 24865548 C T FAM65B Missense_Mutation p.S182N 0.17 tolerated(0.11) probably_damaging(0.959) TCGA-19-5956-01 6 25471454 25471454 G T LRRC16A Nonsense_Mutation p.E250* 0.20 TCGA-19-5956-01 6 25610410 25610410 G A LRRC16A Splice_Site p.X1327_splice 0.48 TCGA-19-5956-01 6 25682178 25682178 G A SCGN Splice_Site p.X158_splice 0.20 TCGA-19-5956-01 6 25726659 25726659 G A HIST1H2AA Missense_Mutation p.R33C 0.34 deleterious_low_confidence(0.03) probably_damaging(0.989) TCGA-19-5956-01 6 25779545 25779545 T G SLC17A4 3'UTR 0.56 TCGA-19-5956-01 6 25819793 25819793 C T SLC17A1 Missense_Mutation p.V159I 0.50 tolerated(0.28) benign(0.095) TCGA-19-5956-01 6 25973454 25973454 C A TRIM38 Missense_Mutation p.T272N 0.47 deleterious(0.03) benign(0.159) TCGA-19-5956-01 6 26017258 26017258 C T HIST1H1A 3'Flank 0.51 TCGA-19-5956-01 6 26033684 26033684 C T HIST1H2AB Missense_Mutation p.G38D 0.11 deleterious_low_confidence(0.02) probably_damaging(1) TCGA-19-5956-01 6 26271388 26271388 G A HIST1H3G Silent p.I75I 0.27 TCGA-19-5956-01 6 26273476 26273476 T C HIST1H2BI Silent p.T91T 0.10 TCGA-19-5956-01 6 26377241 26377241 C A BTN3A2 3'UTR 0.21 TCGA-19-5956-01 6 26392674 26392674 C T BTN2A2 Missense_Mutation p.R351W 0.31 tolerated(0.13) probably_damaging(0.977) TCGA-19-5956-01 6 26459743 26459743 C A BTN2A1 Silent p.I39I 0.26 TCGA-19-5956-01 6 26507021 26507021 G T BTN1A1 Nonsense_Mutation p.E274* 0.07 TCGA-19-5956-01 6 26637518 26637518 G T ZNF322 3'UTR 0.24 TCGA-19-5956-01 6 27100379 27100379 G T HIST1H2BJ Missense_Mutation p.P51T 0.39 deleterious_low_confidence(0) possibly_damaging(0.888) TCGA-19-5956-01 6 27220716 27220716 G A PRSS16 Missense_Mutation p.E380K 0.44 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 6 27419043 27419043 G T ZNF184 3'UTR 0.27 TCGA-19-5956-01 6 27419170 27419170 T G ZNF184 Missense_Mutation p.E723A 0.12 deleterious(0.02) benign(0.127) TCGA-19-5956-01 6 27419558 27419558 C T ZNF184 Missense_Mutation p.A594T 0.08 deleterious(0.04) probably_damaging(1) TCGA-19-5956-01 6 27419857 27419857 C A ZNF184 Missense_Mutation p.R494I 0.45 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 27420860 27420860 G A ZNF184 Silent p.L160L 0.50 TCGA-19-5956-01 6 27839739 27839739 T C HIST1H3I Missense_Mutation p.T119A 0.21 deleterious_low_confidence(0.01) benign(0.014) TCGA-19-5956-01 6 27925425 27925425 T C OR2B6 Missense_Mutation p.M136T 0.10 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 6 28056426 28056426 C A ZNF165 Silent p.I212I 0.09 TCGA-19-5956-01 6 28093204 28093204 C T ZSCAN16 5'UTR 0.44 TCGA-19-5956-01 6 28097503 28097503 T G ZSCAN16 Missense_Mutation p.I274M 0.21 deleterious(0.03) possibly_damaging(0.596) TCGA-19-5956-01 6 28119697 28119697 C A ZKSCAN8 Missense_Mutation p.L212I 0.48 tolerated(0.39) benign(0.022) TCGA-19-5956-01 6 28120946 28120946 T G ZKSCAN8 Silent p.G296G 0.11 TCGA-19-5956-01 6 28213653 28213653 C A ZKSCAN4 Missense_Mutation p.Q293H 0.51 deleterious(0.03) possibly_damaging(0.687) TCGA-19-5956-01 6 28331124 28331124 G T ZKSCAN3 Missense_Mutation p.D199Y 0.19 deleterious(0.01) possibly_damaging(0.826) TCGA-19-5956-01 6 28493790 28493790 C A GPX5 5'UTR 0.21 TCGA-19-5956-01 6 28540923 28540923 G T SCAND3 Missense_Mutation p.L915I 0.22 deleterious(0.01) probably_damaging(0.926) TCGA-19-5956-01 6 28871815 28871815 G A TRIM27 3'UTR 0.46 TCGA-19-5956-01 6 28963055 28963055 C A ZNF311 Missense_Mutation p.R575I 0.45 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 6 28963198 28963198 G A ZNF311 Silent p.Y527Y 0.29 TCGA-19-5956-01 6 28963728 28963728 G T ZNF311 Missense_Mutation p.L351I 0.12 tolerated(0.97) benign(0.01) TCGA-19-5956-01 6 28963745 28963745 C T ZNF311 Missense_Mutation p.R345H 0.18 tolerated(0.47) benign(0.002) TCGA-19-5956-01 6 29054432 29054432 C A OR2B3 Missense_Mutation p.E198D 0.42 tolerated(0.19) probably_damaging(0.999) TCGA-19-5956-01 6 29274779 29274779 C A OR14J1 Missense_Mutation p.L105M 0.13 deleterious(0.03) benign(0.209) TCGA-19-5956-01 6 29275123 29275123 C A OR14J1 Silent p.I219I 0.50 TCGA-19-5956-01 6 29323659 29323659 A G OR5V1 Missense_Mutation p.V105A 0.33 tolerated(0.1) benign(0.021) TCGA-19-5956-01 6 29323709 29323709 C A OR5V1 Missense_Mutation p.K88N 0.10 deleterious(0.04) benign(0.048) TCGA-19-5956-01 6 29430096 29430096 C T OR2H1 Nonsense_Mutation p.R184* 0.13 TCGA-19-5956-01 6 2954899 2954899 C A SERPINB6 Missense_Mutation p.E119D 0.22 deleterious(0.02) probably_damaging(0.986) TCGA-19-5956-01 6 29571429 29571429 C T GABBR1 Missense_Mutation p.R926H 0.20 tolerated(0.13) benign(0.007) TCGA-19-5956-01 6 29580366 29580366 C T GABBR1 Missense_Mutation p.G531D 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 29640897 29640897 C A ZFP57 Nonsense_Mutation p.E331* 0.10 TCGA-19-5956-01 6 29693050 29693050 G A HLA-F Missense_Mutation p.E285K 0.43 tolerated_low_confidence(0.09) benign(0.007) TCGA-19-5956-01 6 30136086 30136086 G A TRIM15 Missense_Mutation p.E163K 0.22 tolerated(0.08) possibly_damaging(0.903) TCGA-19-5956-01 6 30136149 30136149 C T TRIM15 Nonsense_Mutation p.R184* 0.34 TCGA-19-5956-01 6 30139980 30139980 G A TRIM15 Missense_Mutation p.A418T 0.72 tolerated(0.5) benign(0.001) TCGA-19-5956-01 6 30140157 30140157 G T TRIM15 3'UTR 0.24 TCGA-19-5956-01 6 30157246 30157246 C A TRIM26 Nonsense_Mutation p.E285* 0.44 TCGA-19-5956-01 6 30522617 30522617 C T GNL1 Missense_Mutation p.S151N 0.49 tolerated(0.32) benign(0.222) TCGA-19-5956-01 6 30622492 30622492 G T DHX16 Missense_Mutation p.F996L 0.09 deleterious(0) unknown(0) TCGA-19-5956-01 6 30656508 30656508 C T NRM Missense_Mutation p.R240H 0.43 tolerated(0.24) benign(0.001) TCGA-19-5956-01 6 30671308 30671308 C T MDC1 Missense_Mutation p.V1857M 0.44 tolerated(0.11) benign(0.02) TCGA-19-5956-01 6 30673873 30673873 G A MDC1 Silent p.G1029G 0.37 TCGA-19-5956-01 6 30711680 30711680 C T IER3 3'UTR 0.15 TCGA-19-5956-01 6 30890724 30890724 G A VARS2 Missense_Mutation p.R749K 0.10 deleterious(0) probably_damaging(0.944) TCGA-19-5956-01 6 30892276 30892276 G T VARS2 Missense_Mutation p.R901M 0.17 deleterious(0.01) possibly_damaging(0.712) TCGA-19-5956-01 6 31079556 31079556 G A C6orf15 Missense_Mutation p.R194C 0.23 deleterious(0.01) benign(0.272) TCGA-19-5956-01 6 31133903 31133903 G T POU5F1 Intron 0.55 TCGA-19-5956-01 6 31170670 31170670 T C HCG27 3'UTR 0.10 TCGA-19-5956-01 6 31379747 31379747 C T MICA Missense_Mutation p.R213C 0.25 tolerated(0.18) benign(0.031) TCGA-19-5956-01 6 31474067 31474067 C A MICB Missense_Mutation p.A158D 0.07 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 6 31541176 31541176 C T LTA Silent p.F108F 0.36 TCGA-19-5956-01 6 31544574 31544574 C T TNF Missense_Mutation p.P88L 0.45 tolerated(0.1) possibly_damaging(0.852) TCGA-19-5956-01 6 31560544 31560544 C A NCR3 5'UTR 0.19 TCGA-19-5956-01 6 31584621 31584621 G T AIF1 Nonsense_Mutation p.E130* 0.11 TCGA-19-5956-01 6 31608591 31608591 C T BAG6 Missense_Mutation p.R941H 0.40 tolerated(0.52) probably_damaging(0.984) TCGA-19-5956-01 6 31626826 31626826 C A C6orf47 3'UTR 0.47 TCGA-19-5956-01 6 31640063 31640063 C T CSNK2B-LY6G5B-1181 3'UTR 0.28 TCGA-19-5956-01 6 31655463 31655463 C T ABHD16A Missense_Mutation p.R501H 0.26 tolerated(0.12) benign(0.288) TCGA-19-5956-01 6 31694834 31694834 T G DDAH2 3'UTR 0.52 TCGA-19-5956-01 6 31750346 31750346 C T VARS Missense_Mutation p.R651H 0.14 tolerated(0.5) probably_damaging(0.953) TCGA-19-5956-01 6 31785186 31785186 C T HSPA1A Silent p.S551S 0.15 TCGA-19-5956-01 6 31833281 31833281 G A SLC44A4 Silent p.Y560Y 0.08 TCGA-19-5956-01 6 31843691 31843691 G A SLC44A4 Silent p.D60D 0.45 TCGA-19-5956-01 6 31847956 31847956 C T EHMT2 Missense_Mutation p.E1180K 0.14 tolerated(0.29) probably_damaging(0.978) TCGA-19-5956-01 6 31854618 31854618 G A EHMT2 Silent p.A725A 0.41 TCGA-19-5956-01 6 31867874 31867874 G A ZBTB12 Silent p.H403H 0.41 TCGA-19-5956-01 6 31915596 31915596 G A CFB Missense_Mutation p.D748N 0.50 tolerated(1) benign(0.014) TCGA-19-5956-01 6 32036768 32036768 G A TNXB Silent p.F1911F 0.44 TCGA-19-5956-01 6 32094907 32094907 C T ATF6B Silent p.S105S 0.16 TCGA-19-5956-01 6 32151070 32151070 G A AGER Intron 0.45 TCGA-19-5956-01 6 32187947 32187947 G A NOTCH4 Missense_Mutation p.S425L 0.47 deleterious(0) possibly_damaging(0.713) TCGA-19-5956-01 6 32188187 32188187 C T NOTCH4 Missense_Mutation p.R385H 0.27 tolerated(0.15) benign(0.028) TCGA-19-5956-01 6 32317603 32317603 G T C6orf10 Missense_Mutation p.S88Y 0.11 tolerated_low_confidence(0.73) benign(0.041) TCGA-19-5956-01 6 32782984 32782984 G A HLA-DOB Silent p.F66F 0.24 TCGA-19-5956-01 6 32823970 32823970 G A PSMB9 Missense_Mutation p.R39Q 0.49 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 32825134 32825134 G A PSMB9 Missense_Mutation p.V75M 0.44 tolerated(0.06) benign(0.117) TCGA-19-5956-01 6 32827325 32827325 C A PSMB9 3'UTR 0.47 TCGA-19-5956-01 6 32918448 32918448 G T HLA-DMA Missense_Mutation p.S74Y 0.46 deleterious(0.02) possibly_damaging(0.864) TCGA-19-5956-01 6 32945548 32945548 C T BRD2 Silent p.F448F 0.47 TCGA-19-5956-01 6 33052924 33052924 C A HLA-DPB1 Missense_Mutation p.L188M 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 33232274 33232274 C T VPS52 Silent p.R467R 0.21 TCGA-19-5956-01 6 33260055 33260055 C T RGL2 Missense_Mutation p.A720T 0.08 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 6 33263938 33263938 C T RGL2 Missense_Mutation p.R212Q 0.48 tolerated(0.24) benign(0.14) TCGA-19-5956-01 6 33272136 33272136 C T TAPBP Missense_Mutation p.R383Q 0.40 tolerated(0.23) probably_damaging(0.971) TCGA-19-5956-01 6 33283449 33283449 C T ZBTB22 Silent p.P415P 0.30 TCGA-19-5956-01 6 33284409 33284409 C T ZBTB22 Silent p.S95S 0.43 TCGA-19-5956-01 6 33290651 33290651 C T DAXX 5'UTR 0.10 TCGA-19-5956-01 6 33367978 33367978 C T KIFC1 Intron 0.19 TCGA-19-5956-01 6 33380542 33380542 G A PHF1 Silent p.R103R 0.45 TCGA-19-5956-01 6 33385373 33385373 T C CUTA Missense_Mutation p.S67G 0.10 deleterious(0.04) benign(0.085) TCGA-19-5956-01 6 33385403 33385403 G A CUTA Missense_Mutation p.P57S 0.14 tolerated(0.15) benign(0.067) TCGA-19-5956-01 6 33412350 33412350 C T SYNGAP1 Missense_Mutation p.L1180F 0.11 tolerated(0.12) probably_damaging(0.999) TCGA-19-5956-01 6 33423202 33423202 C T ZBTB9 Missense_Mutation p.R109C 0.57 tolerated(0.07) benign(0.109) TCGA-19-5956-01 6 33633655 33633655 G A ITPR3 Missense_Mutation p.D485N 0.41 tolerated(0.31) probably_damaging(0.948) TCGA-19-5956-01 6 33639822 33639822 G A ITPR3 Silent p.R915R 0.17 TCGA-19-5956-01 6 33653482 33653482 C T ITPR3 Missense_Mutation p.R1849C 0.49 deleterious(0.03) benign(0.001) TCGA-19-5956-01 6 33655938 33655938 G T ITPR3 Missense_Mutation p.Q2123H 0.30 deleterious(0) benign(0.036) TCGA-19-5956-01 6 34003450 34003450 C T GRM4 Missense_Mutation p.D813N 0.28 tolerated(0.23) benign(0.017) TCGA-19-5956-01 6 34101015 34101015 C T GRM4 Missense_Mutation p.D87N 0.16 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 34789505 34789505 G A UHRF1BP1 Silent p.E40E 0.29 TCGA-19-5956-01 6 34826092 34826092 G T UHRF1BP1 Missense_Mutation p.K653N 0.21 deleterious(0) benign(0.424) TCGA-19-5956-01 6 34962129 34962129 C T ANKS1A Silent p.D451D 0.37 TCGA-19-5956-01 6 35393770 35393770 G A PPARD Missense_Mutation p.A414T 0.16 deleterious(0.01) probably_damaging(0.954) TCGA-19-5956-01 6 35547852 35547852 C A FKBP5 Missense_Mutation p.K329N 0.26 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 6 35755728 35755728 G A CLPSL1 Missense_Mutation p.A103T 0.30 tolerated(0.88) benign(0.015) TCGA-19-5956-01 6 35922940 35922940 C T SLC26A8 Missense_Mutation p.V741I 0.42 tolerated(0.49) benign(0.079) TCGA-19-5956-01 6 36100407 36100407 C T MAPK13 Missense_Mutation p.L87F 0.11 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 36261966 36261966 G T PNPLA1 Splice_Site p.X169_splice 0.28 TCGA-19-5956-01 6 36270033 36270033 A C PNPLA1 Missense_Mutation p.T391P 0.08 tolerated_low_confidence(0.18) benign(0.1) TCGA-19-5956-01 6 36287179 36287179 C A C6orf222 Missense_Mutation p.R626I 0.11 deleterious(0.04) possibly_damaging(0.883) TCGA-19-5956-01 6 37186253 37186253 G A TMEM217 Missense_Mutation p.S185L 0.09 tolerated(0.91) benign(0) TCGA-19-5956-01 6 37186624 37186624 G T TMEM217 Silent p.I61I 0.18 TCGA-19-5956-01 6 37452931 37452931 C T CCDC167 Missense_Mutation p.D28N 0.19 tolerated(0.49) benign(0.082) TCGA-19-5956-01 6 37612369 37612369 C A MDGA1 Missense_Mutation p.D769Y 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 37631855 37631855 G A MDGA1 Missense_Mutation p.A32V 0.27 deleterious(0.03) possibly_damaging(0.456) TCGA-19-5956-01 6 38120191 38120191 G A ZFAND3 3'UTR 0.08 TCGA-19-5956-01 6 38142587 38142587 G A BTBD9 3'UTR 0.15 TCGA-19-5956-01 6 38560416 38560416 G A BTBD9 Silent p.I250I 0.45 TCGA-19-5956-01 6 38702309 38702309 G A DNAH8 Missense_Mutation p.D7N 0.47 benign(0.001) TCGA-19-5956-01 6 38738285 38738285 G T DNAH8 Nonsense_Mutation p.E355* 0.24 TCGA-19-5956-01 6 38758143 38758143 G A DNAH8 Missense_Mutation p.E698K 0.15 benign(0.001) TCGA-19-5956-01 6 38835847 38835847 G T DNAH8 Missense_Mutation p.D2018Y 0.42 probably_damaging(0.999) TCGA-19-5956-01 6 38850830 38850830 T A DNAH8 Splice_Site p.X2450_splice 0.44 TCGA-19-5956-01 6 38919246 38919246 G A DNAH8 Missense_Mutation p.G3917E 0.23 probably_damaging(1) TCGA-19-5956-01 6 38941476 38941476 G A DNAH8 Missense_Mutation p.E3972K 0.20 benign(0.155) TCGA-19-5956-01 6 39047345 39047345 C T GLP1R Missense_Mutation p.A350V 0.27 deleterious(0.04) probably_damaging(1) TCGA-19-5956-01 6 39159286 39159286 G T KCNK5 Missense_Mutation p.L294I 0.42 deleterious(0.01) probably_damaging(0.962) TCGA-19-5956-01 6 39284619 39284619 G A KCNK16 Silent p.S200S 0.22 TCGA-19-5956-01 6 39313476 39313476 C A KIF6 Missense_Mutation p.S774I 0.22 tolerated_low_confidence(0.26) benign(0.107) TCGA-19-5956-01 6 39828731 39828731 C T DAAM2 Nonsense_Mutation p.R66* 0.35 TCGA-19-5956-01 6 39874227 39874227 T C MOCS1 3'UTR 0.26 TCGA-19-5956-01 6 39877654 39877654 G A MOCS1 Nonsense_Mutation p.R343* 0.48 TCGA-19-5956-01 6 39877691 39877691 G T MOCS1 Silent p.L330L 0.44 TCGA-19-5956-01 6 4032299 4032299 G A PRPF4B Missense_Mutation p.R183Q 0.14 tolerated_low_confidence(0.37) benign(0.033) TCGA-19-5956-01 6 4037669 4037669 G T PRPF4B Missense_Mutation p.R426I 0.08 deleterious_low_confidence(0) possibly_damaging(0.86) TCGA-19-5956-01 6 4087906 4087906 A C C6orf201 Missense_Mutation p.N11H 0.42 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 6 40999480 40999480 C T UNC5CL Silent p.E353E 0.39 TCGA-19-5956-01 6 41001889 41001889 C T UNC5CL Silent p.V139V 0.19 TCGA-19-5956-01 6 41557797 41557797 G A FOXP4 Missense_Mutation p.A416T 0.40 tolerated(1) benign(0.029) TCGA-19-5956-01 6 41773524 41773524 C T USP49 Missense_Mutation p.A400T 0.21 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 41773698 41773698 G T USP49 Missense_Mutation p.L342M 0.11 tolerated(1) probably_damaging(0.958) TCGA-19-5956-01 6 42036241 42036241 G T TAF8 Missense_Mutation p.A226S 0.11 tolerated(0.05) benign(0.018) TCGA-19-5956-01 6 42156458 42156458 G A GUCA1B Silent p.I73I 0.39 TCGA-19-5956-01 6 42579958 42579958 C T UBR2 Missense_Mutation p.S305L 0.53 deleterious(0) possibly_damaging(0.475) TCGA-19-5956-01 6 42613315 42613315 C A UBR2 Missense_Mutation p.S799Y 0.09 deleterious(0.02) benign(0.281) TCGA-19-5956-01 6 42657352 42657352 C T UBR2 Silent p.G1690G 0.18 TCGA-19-5956-01 6 42932643 42932643 G A PEX6 Silent p.S897S 0.45 TCGA-19-5956-01 6 43017358 43017358 C A CUL7 Nonsense_Mutation p.E622* 0.29 TCGA-19-5956-01 6 43155169 43155169 C A CUL9 Missense_Mutation p.L525M 0.14 deleterious(0.04) possibly_damaging(0.883) TCGA-19-5956-01 6 43174203 43174203 G T CUL9 Nonsense_Mutation p.E1723* 0.22 TCGA-19-5956-01 6 43267198 43267198 T C SLC22A7 Missense_Mutation p.V157A 0.17 deleterious(0.04) benign(0.411) TCGA-19-5956-01 6 43270059 43270059 T G SLC22A7 Missense_Mutation p.L395V 0.12 tolerated(0.47) benign(0.019) TCGA-19-5956-01 6 43323401 43323401 G A ZNF318 Silent p.S557S 0.12 TCGA-19-5956-01 6 43399917 43399917 C T ABCC10 Missense_Mutation p.R67C 0.22 tolerated(0.13) possibly_damaging(0.77) TCGA-19-5956-01 6 43420838 43420838 C T DLK2 Missense_Mutation p.R59H 0.29 tolerated(0.12) benign(0.366) TCGA-19-5956-01 6 43488482 43488482 C T POLR1C Missense_Mutation p.P259S 0.41 tolerated(0.2) benign(0.014) TCGA-19-5956-01 6 43592727 43592727 C T GTPBP2 Missense_Mutation p.D260N 0.15 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 43618165 43618165 C T RSPH9 Missense_Mutation p.A94V 0.23 tolerated(0.36) benign(0) TCGA-19-5956-01 6 43752377 43752377 C T VEGFA 3'Flank 0.21 TCGA-19-5956-01 6 44108824 44108824 G T TMEM63B Missense_Mutation p.K257N 0.12 tolerated(0.31) benign(0.055) TCGA-19-5956-01 6 44270894 44270894 G A AARS2 Missense_Mutation p.R722W 0.51 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 6 44393877 44393877 G A CDC5L Missense_Mutation p.R536Q 0.14 tolerated(0.21) benign(0.167) TCGA-19-5956-01 6 46129466 46129466 G A ENPP5 Missense_Mutation p.A344V 0.10 tolerated(0.13) benign(0.003) TCGA-19-5956-01 6 46623767 46623767 C T SLC25A27 Silent p.H98H 0.10 TCGA-19-5956-01 6 46626615 46626615 C T SLC25A27 Intron 0.15 TCGA-19-5956-01 6 46656285 46656285 C T TDRD6 Silent p.G140G 0.41 TCGA-19-5956-01 6 46659947 46659947 C A TDRD6 Missense_Mutation p.A1361D 0.39 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 46678252 46678252 A G PLA2G7 Intron 0.48 TCGA-19-5956-01 6 46847678 46847678 G A GPR116 Missense_Mutation p.R305C 0.42 deleterious(0.03) possibly_damaging(0.806) TCGA-19-5956-01 6 47200515 47200515 G A TNFRSF21 Missense_Mutation p.P652S 0.13 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 47501489 47501489 A C CD2AP Missense_Mutation p.K106T 0.26 deleterious(0.04) benign(0.052) TCGA-19-5956-01 6 47763134 47763134 G T OPN5 Missense_Mutation p.Q197H 0.17 tolerated(0.18) probably_damaging(0.986) TCGA-19-5956-01 6 47775895 47775895 G A OPN5 Silent p.A254A 0.95 TCGA-19-5956-01 6 4943786 4943786 C T CDYL Silent p.F376F 0.24 TCGA-19-5956-01 6 4943936 4943936 G T CDYL Missense_Mutation p.Q426H 0.21 deleterious(0.02) probably_damaging(0.989) TCGA-19-5956-01 6 49573366 49573366 G A RHAG 3'UTR 0.62 TCGA-19-5956-01 6 49665572 49665572 C T CRISP2 Splice_Site p.X172_splice 0.06 TCGA-19-5956-01 6 49705037 49705037 C T CRISP3 Splice_Site p.X47_splice 0.12 TCGA-19-5956-01 6 49808705 49808705 C T CRISP1 Missense_Mutation p.V147I 0.22 tolerated(0.15) benign(0.203) TCGA-19-5956-01 6 49937294 49937294 A G DEFB113 Silent p.S15S 0.47 TCGA-19-5956-01 6 5000858 5000858 G T RPP40 Nonsense_Mutation p.C92* 0.41 TCGA-19-5956-01 6 50712897 50712897 C A TFAP2D Missense_Mutation p.L321I 0.27 tolerated(0.05) benign(0.297) TCGA-19-5956-01 6 50807875 50807875 C A TFAP2B Missense_Mutation p.A316D 0.15 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 6 51483831 51483831 T A PKHD1 3'UTR 0.40 TCGA-19-5956-01 6 51586796 51586796 C A PKHD1 Intron 0.30 TCGA-19-5956-01 6 51612969 51612969 C T PKHD1 Missense_Mutation p.A3149T 0.22 deleterious(0.04) benign(0.262) TCGA-19-5956-01 6 51774235 51774235 C A PKHD1 Missense_Mutation p.K2176N 0.27 deleterious(0) possibly_damaging(0.864) TCGA-19-5956-01 6 51900517 51900517 C A PKHD1 Missense_Mutation p.G1034W 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 51910816 51910816 G A PKHD1 Missense_Mutation p.P860S 0.49 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 52141268 52141268 C T MCM3 Missense_Mutation p.R436H 0.36 deleterious(0) possibly_damaging(0.483) TCGA-19-5956-01 6 52355061 52355061 G T EFHC1 Missense_Mutation p.K588N 0.07 deleterious(0.04) benign(0.033) TCGA-19-5956-01 6 52945803 52945803 C A FBXO9 Missense_Mutation p.L159I 0.23 deleterious(0.01) benign(0.128) TCGA-19-5956-01 6 52993652 52993652 A C GCM1 Missense_Mutation p.H221Q 0.09 tolerated(0.05) benign(0.126) TCGA-19-5956-01 6 532556 532556 C T EXOC2 Missense_Mutation p.E765K 0.20 deleterious(0) possibly_damaging(0.905) TCGA-19-5956-01 6 53363724 53363724 C T GCLC Missense_Mutation p.A582T 0.50 tolerated(0.65) benign(0.001) TCGA-19-5956-01 6 54212185 54212185 G T TINAG Missense_Mutation p.A257S 0.17 tolerated(0.77) benign(0.337) TCGA-19-5956-01 6 54805744 54805744 C T FAM83B Silent p.L659L 0.28 TCGA-19-5956-01 6 54805889 54805889 C A FAM83B Missense_Mutation p.S707Y 0.10 deleterious(0) benign(0.01) TCGA-19-5956-01 6 55039461 55039461 G T HCRTR2 Nonsense_Mutation p.E26* 0.12 TCGA-19-5956-01 6 55223705 55223705 C T GFRAL Nonsense_Mutation p.Q241* 0.45 TCGA-19-5956-01 6 55223747 55223747 G T GFRAL Missense_Mutation p.D255Y 0.10 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 55638897 55638897 C T BMP5 Missense_Mutation p.R326H 0.43 tolerated(0.09) benign(0.286) TCGA-19-5956-01 6 55659075 55659075 A G BMP5 Splice_Site p.X278_splice 0.10 TCGA-19-5956-01 6 55922486 55922486 C T COL21A1 Missense_Mutation p.R948K 0.36 deleterious(0.02) unknown(0) TCGA-19-5956-01 6 56044831 56044831 T G COL21A1 Missense_Mutation p.N62T 0.35 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 56325051 56325051 C T DST Missense_Mutation p.G5044E 0.38 possibly_damaging(0.845) TCGA-19-5956-01 6 56358849 56358849 C A DST Nonsense_Mutation p.E4162* 0.17 TCGA-19-5956-01 6 56382326 56382326 C T DST Silent p.Q3451Q 0.41 TCGA-19-5956-01 6 56433384 56433384 C A DST Nonsense_Mutation p.E2007* 0.21 TCGA-19-5956-01 6 56438591 56438591 C T DST Silent p.Q1751Q 0.40 TCGA-19-5956-01 6 56443680 56443680 G A DST Missense_Mutation p.T1697M 0.42 possibly_damaging(0.765) TCGA-19-5956-01 6 56463468 56463468 C T DST Missense_Mutation p.A1289T 0.43 benign(0.012) TCGA-19-5956-01 6 56468640 56468640 C T DST Intron 0.27 TCGA-19-5956-01 6 56469153 56469153 C A DST Intron 0.35 TCGA-19-5956-01 6 56470120 56470120 T G DST Intron 0.49 TCGA-19-5956-01 6 56471346 56471346 C T DST Intron 0.10 TCGA-19-5956-01 6 56471629 56471629 C A DST Intron 0.27 TCGA-19-5956-01 6 56484976 56484976 C A DST Intron 0.10 TCGA-19-5956-01 6 56504351 56504351 G A DST Missense_Mutation p.A382V 0.25 probably_damaging(0.967) TCGA-19-5956-01 6 56918594 56918594 G A KIAA1586 Missense_Mutation p.E433K 0.38 deleterious(0.01) possibly_damaging(0.839) TCGA-19-5956-01 6 56993578 56993578 C T ZNF451 Nonsense_Mutation p.R122* 0.48 TCGA-19-5956-01 6 57013143 57013143 C T ZNF451 Missense_Mutation p.R754C 0.16 deleterious(0.03) benign(0.141) TCGA-19-5956-01 6 57013470 57013470 G T ZNF451 Missense_Mutation p.D863Y 0.11 deleterious_low_confidence(0.03) probably_damaging(0.94) TCGA-19-5956-01 6 57017058 57017058 T C ZNF451 Missense_Mutation p.I931T 0.26 deleterious(0.02) benign(0.219) TCGA-19-5956-01 6 57017076 57017076 G T ZNF451 Missense_Mutation p.R937M 0.40 deleterious(0) possibly_damaging(0.907) TCGA-19-5956-01 6 57048870 57048870 G T BAG2 Missense_Mutation p.R173I 0.17 deleterious(0) probably_damaging(0.978) TCGA-19-5956-01 6 57398309 57398309 C T PRIM2 Missense_Mutation p.P338S 0.10 tolerated(0.28) benign(0.016) TCGA-19-5956-01 6 63989845 63989845 A G LGSN 3'UTR 0.41 TCGA-19-5956-01 6 64389954 64389954 G A PHF3 Missense_Mutation p.D100N 0.16 deleterious(0.01) probably_damaging(0.977) TCGA-19-5956-01 6 64395522 64395522 G T PHF3 Missense_Mutation p.Q633H 0.07 tolerated(0.44) benign(0.003) TCGA-19-5956-01 6 64423327 64423327 G A PHF3 Missense_Mutation p.R1948H 0.18 tolerated(0.5) benign(0.027) TCGA-19-5956-01 6 656704 656704 C T HUS1B Missense_Mutation p.E81K 0.28 deleterious(0.03) probably_damaging(0.996) TCGA-19-5956-01 6 6589026 6589026 G A LY86 Missense_Mutation p.G20E 0.48 tolerated(0.8) benign(0.027) TCGA-19-5956-01 6 69653783 69653783 C T BAI3 Silent p.G364G 0.11 TCGA-19-5956-01 6 69723929 69723929 G A BAI3 Splice_Site p.X644_splice 0.44 TCGA-19-5956-01 6 70071119 70071119 C T BAI3 Silent p.N1318N 0.48 TCGA-19-5956-01 6 70900067 70900067 G A COL19A1 Missense_Mutation p.V1026I 0.18 deleterious(0.01) probably_damaging(0.963) TCGA-19-5956-01 6 70935662 70935662 C T COL9A1 Missense_Mutation p.G852S 0.39 probably_damaging(1) TCGA-19-5956-01 6 7226885 7226885 C A RREB1 Missense_Mutation p.S298Y 0.45 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 6 7230690 7230690 C T RREB1 Silent p.G786G 0.76 TCGA-19-5956-01 6 72960787 72960787 C A RIMS1 Missense_Mutation p.L846I 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 6 7299049 7299049 A G SSR1 Missense_Mutation p.V184A 0.35 tolerated(0.58) benign(0.008) TCGA-19-5956-01 6 73110213 73110213 G T RIMS1 Missense_Mutation p.D1626Y 0.39 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 73843208 73843208 C T KCNQ5 Nonsense_Mutation p.R457* 0.10 TCGA-19-5956-01 6 73951330 73951330 C T KHDC1 Silent p.V212V 0.51 TCGA-19-5956-01 6 7402920 7402920 C T RIOK1 Missense_Mutation p.R220W 0.44 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 74072463 74072463 C T KHDC3L Missense_Mutation p.P4L 0.48 tolerated(0.49) benign(0.343) TCGA-19-5956-01 6 74072992 74072992 C T KHDC3L Missense_Mutation p.A115V 0.45 tolerated(0.07) benign(0.275) TCGA-19-5956-01 6 74073634 74073634 C T KHDC3L 3'UTR 0.50 TCGA-19-5956-01 6 74078995 74078995 C T OOEP Missense_Mutation p.V102I 0.16 deleterious(0.02) probably_damaging(0.978) TCGA-19-5956-01 6 74331623 74331623 G A SLC17A5 Silent p.I294I 0.11 TCGA-19-5956-01 6 74472593 74472593 G T CD109 Nonsense_Mutation p.E329* 0.20 TCGA-19-5956-01 6 7575697 7575697 G T DSP Missense_Mutation p.R869M 0.43 possibly_damaging(0.653) TCGA-19-5956-01 6 7576548 7576548 A C DSP Missense_Mutation p.Q884H 0.06 probably_damaging(0.978) TCGA-19-5956-01 6 7583735 7583735 C T DSP Silent p.F2080F 0.07 TCGA-19-5956-01 6 75858180 75858180 G T COL12A1 Missense_Mutation p.S1394Y 0.12 probably_damaging(0.995) TCGA-19-5956-01 6 75861939 75861939 C A COL12A1 Missense_Mutation p.R1248I 0.26 probably_damaging(0.999) TCGA-19-5956-01 6 75965752 75965752 C T TMEM30A 3'UTR 0.30 TCGA-19-5956-01 6 75968567 75968567 C T TMEM30A Missense_Mutation p.R274H 0.28 deleterious(0.01) possibly_damaging(0.466) TCGA-19-5956-01 6 76023723 76023723 C A FILIP1 Nonsense_Mutation p.E609* 0.23 TCGA-19-5956-01 6 76540140 76540140 T C MYO6 Missense_Mutation p.V90A 0.10 deleterious(0) unknown(0) TCGA-19-5956-01 6 76570746 76570746 G T MYO6 Nonsense_Mutation p.E494* 0.10 TCGA-19-5956-01 6 76624652 76624652 T C MYO6 Missense_Mutation p.Y1261H 0.24 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 76640794 76640794 C A IMPG1 Nonsense_Mutation p.E707* 0.13 TCGA-19-5956-01 6 76715010 76715010 T C IMPG1 Missense_Mutation p.T377A 0.19 tolerated(0.25) benign(0.004) TCGA-19-5956-01 6 7727396 7727396 C A BMP6 Silent p.R70R 0.33 TCGA-19-5956-01 6 78172244 78172244 G A HTR1B Nonsense_Mutation p.R293* 0.44 TCGA-19-5956-01 6 7895384 7895384 G A TXNDC5 Silent p.L191L 0.41 TCGA-19-5956-01 6 79650535 79650535 C T PHIP Missense_Mutation p.D1781N 0.47 deleterious_low_confidence(0) benign(0.411) TCGA-19-5956-01 6 79655791 79655791 C T PHIP Silent p.E1519E 0.24 TCGA-19-5956-01 6 79724815 79724815 C T PHIP Missense_Mutation p.R503Q 0.07 tolerated(0.1) probably_damaging(0.921) TCGA-19-5956-01 6 79752570 79752570 C T PHIP Missense_Mutation p.R197Q 0.22 deleterious(0.03) probably_damaging(0.979) TCGA-19-5956-01 6 79787598 79787598 C A PHIP Missense_Mutation p.D25Y 0.40 deleterious(0.04) possibly_damaging(0.867) TCGA-19-5956-01 6 80197265 80197265 C A LCA5 Missense_Mutation p.R517I 0.13 deleterious(0.01) possibly_damaging(0.857) TCGA-19-5956-01 6 80626318 80626318 G T ELOVL4 3'UTR 0.34 TCGA-19-5956-01 6 80631444 80631444 G T ELOVL4 Missense_Mutation p.L147M 0.19 tolerated(0.05) probably_damaging(0.941) TCGA-19-5956-01 6 80631506 80631506 G T ELOVL4 Missense_Mutation p.A126D 0.25 tolerated(0.55) benign(0.024) TCGA-19-5956-01 6 81053596 81053596 G A BCKDHB 3'UTR 0.10 TCGA-19-5956-01 6 83819938 83819938 C T DOPEY1 Missense_Mutation p.R196C 0.19 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 83847231 83847231 T C DOPEY1 Missense_Mutation p.I1157T 0.38 deleterious_low_confidence(0.01) possibly_damaging(0.576) TCGA-19-5956-01 6 83898427 83898427 C T PGM3 Missense_Mutation p.E127K 0.18 tolerated(0.06) benign(0.314) TCGA-19-5956-01 6 84563413 84563413 G T RIPPLY2 Splice_Site p.X32_splice 0.22 TCGA-19-5956-01 6 84836166 84836166 G A KIAA1009 Silent p.F1312F 0.42 TCGA-19-5956-01 6 84884477 84884477 A C KIAA1009 Missense_Mutation p.L665W 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 6 86224313 86224313 C T SNX14 Missense_Mutation p.R768H 0.46 tolerated(0.57) possibly_damaging(0.836) TCGA-19-5956-01 6 86329023 86329023 G T SYNCRIP Missense_Mutation p.A374E 0.10 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 6 87797871 87797871 C T CGA Silent p.S16S 0.37 TCGA-19-5956-01 6 87943239 87943239 C T ZNF292 Silent p.I245I 0.08 TCGA-19-5956-01 6 87964528 87964528 T G ZNF292 Missense_Mutation p.F394C 0.51 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 87965019 87965019 C T ZNF292 Nonsense_Mutation p.R558* 0.38 TCGA-19-5956-01 6 87965659 87965659 G A ZNF292 Missense_Mutation p.R771Q 0.13 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 6 87971291 87971291 C T ZNF292 Silent p.S2648S 0.19 TCGA-19-5956-01 6 87993979 87993980 - T GJB7 Frame_Shift_Ins p.P218Tfs*40 0.08 TCGA-19-5956-01 6 88120349 88120349 G T C6ORF165 Missense_Mutation p.R52I 0.42 deleterious(0) possibly_damaging(0.542) TCGA-19-5956-01 6 88210933 88210933 C T SLC35A1 Missense_Mutation p.R138W 0.08 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 88318861 88318861 A C ORC3 Missense_Mutation p.Q209H 0.53 tolerated(0.5) benign(0.001) TCGA-19-5956-01 6 88387575 88387575 G A AKIRIN2 Nonsense_Mutation p.R164* 0.21 TCGA-19-5956-01 6 88854440 88854440 C A CNR1 Missense_Mutation p.S185I 0.24 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 6 88854595 88854595 C A CNR1 Missense_Mutation p.E133D 0.11 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 6 89638741 89638741 A G RNGTT Silent p.C110C 0.19 TCGA-19-5956-01 6 89808395 89808395 C A SRSF12 Missense_Mutation p.G230W 0.09 deleterious_low_confidence(0.01) benign(0.139) TCGA-19-5956-01 6 89871610 89871610 G A PM20D2 Splice_Site p.X386_splice 0.50 TCGA-19-5956-01 6 89891764 89891764 C T GABRR1 Missense_Mutation p.R270H 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 90077721 90077721 C T RRAGD 3'UTR 0.17 TCGA-19-5956-01 6 90097062 90097062 C A RRAGD Missense_Mutation p.E132D 0.20 tolerated(0.49) benign(0.007) TCGA-19-5956-01 6 90500023 90500023 G A MDN1 Missense_Mutation p.A318V 0.08 possibly_damaging(0.537) TCGA-19-5956-01 6 90575920 90575920 C T CASP8AP2 RNA 0.33 TCGA-19-5956-01 6 90604334 90604334 G A GJA10 Silent p.Q49Q 0.15 TCGA-19-5956-01 6 90660114 90660114 T G BACH2 Missense_Mutation p.M571L 0.16 tolerated(0.76) benign(0.001) TCGA-19-5956-01 6 91246130 91246130 G T MAP3K7 Intron 0.16 TCGA-19-5956-01 6 91261844 91261844 G T MAP3K7 Missense_Mutation p.T264N 0.38 deleterious(0) possibly_damaging(0.875) TCGA-19-5956-01 6 94120608 94120608 G T EPHA7 Missense_Mutation p.T148N 0.18 deleterious(0) probably_damaging(1) TCGA-19-5956-01 6 97001294 97001294 C A UFL1 Missense_Mutation p.T767N 0.52 tolerated(0.3) benign(0.001) TCGA-19-5956-01 6 97247152 97247152 G T GPR63 Missense_Mutation p.F152L 0.20 tolerated(0.67) benign(0) TCGA-19-5956-01 6 97345606 97345606 C A NDUFAF4 Missense_Mutation p.K24N 0.31 deleterious(0) benign(0.19) TCGA-19-5956-01 6 97423976 97423976 G A KLHL32 Missense_Mutation p.D43N 0.26 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 6 97561926 97561926 C T KLHL32 Missense_Mutation p.R299C 0.43 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 6 9897099 9897099 C T OFCC1 Intron 0.18 TCGA-19-5956-01 6 99993093 99993093 A C CCNC Missense_Mutation p.I231S 0.41 tolerated(0.45) benign(0.014) TCGA-19-5956-01 7 100086916 100086916 C T NYAP1 Silent p.V524V 0.38 TCGA-19-5956-01 7 100184206 100184206 G T FBXO24 5'Flank 0.21 TCGA-19-5956-01 7 100243916 100243916 G A ACTL6B Missense_Mutation p.R386C 0.47 deleterious(0.01) possibly_damaging(0.874) TCGA-19-5956-01 7 100275180 100275180 G T GNB2 Silent p.G109G 0.19 TCGA-19-5956-01 7 100460443 100460443 G A SLC12A9 Missense_Mutation p.G618S 0.26 deleterious(0.02) probably_damaging(0.995) TCGA-19-5956-01 7 100551720 100551720 G T MUC3A Silent p.T157T 0.30 TCGA-19-5956-01 7 100674975 100674975 C T MUC17 Missense_Mutation p.S93L 0.24 benign(0.01) TCGA-19-5956-01 7 100675899 100675899 G A MUC17 Missense_Mutation p.S401N 0.14 benign(0.341) TCGA-19-5956-01 7 100679120 100679120 C A MUC17 Missense_Mutation p.L1475I 0.41 unknown(0) TCGA-19-5956-01 7 100806383 100806383 G A VGF Missense_Mutation p.A581V 0.56 tolerated_low_confidence(0.23) unknown(0) TCGA-19-5956-01 7 100839531 100839531 G A MOGAT3 Missense_Mutation p.R270C 0.38 tolerated(0.16) benign(0.175) TCGA-19-5956-01 7 100859994 100859994 G T PLOD3 Missense_Mutation p.F61L 0.24 tolerated(0.27) benign(0.001) TCGA-19-5956-01 7 100875703 100875703 G T CLDN15 Missense_Mutation p.N225K 0.23 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 7 100958490 100958490 G A RABL5 Silent p.F161F 0.16 TCGA-19-5956-01 7 101740752 101740752 A G CUX1 Missense_Mutation p.N137S 0.43 tolerated(0.17) unknown(0) TCGA-19-5956-01 7 102036846 102036846 C T PRKRIP1 5'UTR 0.62 TCGA-19-5956-01 7 102517962 102517962 G T FBXL13 Silent p.I529I 0.19 TCGA-19-5956-01 7 102574404 102574404 C T LRRC17 Missense_Mutation p.A15V 0.09 deleterious(0.02) benign(0.005) TCGA-19-5956-01 7 102854519 102854519 T C DPY19L2P2 RNA 0.16 TCGA-19-5956-01 7 102940693 102940693 C A PMPCB Silent p.A132A 0.21 TCGA-19-5956-01 7 102949431 102949431 G A PMPCB Silent p.A294A 0.39 TCGA-19-5956-01 7 102950762 102950762 A C PMPCB Missense_Mutation p.N332H 0.43 tolerated(0.64) benign(0.046) TCGA-19-5956-01 7 103029795 103029795 C A SLC26A5 Missense_Mutation p.R463I 0.18 deleterious(0.01) benign(0.399) TCGA-19-5956-01 7 103243870 103243870 C T RELN Missense_Mutation p.D1072N 0.48 tolerated(0.1) probably_damaging(0.996) TCGA-19-5956-01 7 103363629 103363629 C T RELN Missense_Mutation p.G255S 0.17 tolerated(0.9) benign(0.001) TCGA-19-5956-01 7 103767306 103767306 C T ORC5 Missense_Mutation p.D433N 0.14 deleterious(0) probably_damaging(0.91) TCGA-19-5956-01 7 104722190 104722190 G T KMT2E Missense_Mutation p.S435I 0.17 deleterious(0.02) possibly_damaging(0.727) TCGA-19-5956-01 7 104747852 104747852 G T KMT2E Missense_Mutation p.R983I 0.10 deleterious_low_confidence(0.01) benign(0.308) TCGA-19-5956-01 7 104753006 104753006 A G KMT2E Silent p.G1601G 0.26 TCGA-19-5956-01 7 105103129 105103129 G A PUS7 Nonsense_Mutation p.R566* 0.48 TCGA-19-5956-01 7 105204285 105204285 G T RINT1 Missense_Mutation p.D593Y 0.28 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 7 105207629 105207629 A G RINT1 Silent p.V750V 0.11 TCGA-19-5956-01 7 105671261 105671261 C A CDHR3 Silent p.I776I 0.19 TCGA-19-5956-01 7 106522644 106522644 A G PIK3CG Missense_Mutation p.D874G 0.06 tolerated(0.3) benign(0.063) TCGA-19-5956-01 7 106526717 106526717 C A PIK3CG Missense_Mutation p.P1004T 0.40 tolerated(0.16) benign(0.088) TCGA-19-5956-01 7 106791400 106791400 A C PRKAR2B Missense_Mutation p.N259H 0.08 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 7 106921755 106921755 G T COG5 Nonsense_Mutation p.S553* 0.14 TCGA-19-5956-01 7 107115470 107115470 T G GPR22 Missense_Mutation p.F322C 0.19 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 7 107353047 107353047 G T SLC26A4 Nonsense_Mutation p.E767* 0.13 TCGA-19-5956-01 7 107434917 107434917 C A SLC26A3 Missense_Mutation p.R13M 0.17 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 107559512 107559512 G T DLD Nonsense_Mutation p.E478* 0.23 TCGA-19-5956-01 7 107577705 107577705 A G LAMB1 Missense_Mutation p.V1260A 0.41 tolerated(0.41) benign(0.2) TCGA-19-5956-01 7 107816886 107816886 G T NRCAM Missense_Mutation p.T1047N 0.35 tolerated(0.21) benign(0.008) TCGA-19-5956-01 7 107834589 107834589 C T NRCAM Missense_Mutation p.E553K 0.50 tolerated(0.06) probably_damaging(0.921) TCGA-19-5956-01 7 107834602 107834602 G A NRCAM Silent p.I548I 0.20 TCGA-19-5956-01 7 107834704 107834704 A C NRCAM Splice_Site p.X544_splice 0.06 TCGA-19-5956-01 7 107875036 107875036 G A NRCAM Missense_Mutation p.P74L 0.48 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 108131912 108131912 C T PNPLA8 Splice_Site p.X542_splice 0.18 TCGA-19-5956-01 7 108137134 108137134 G A PNPLA8 Nonsense_Mutation p.R507* 0.16 TCGA-19-5956-01 7 111395638 111395638 G A DOCK4 Missense_Mutation p.T1441M 0.19 deleterious(0.01) probably_damaging(0.996) TCGA-19-5956-01 7 111926941 111926941 T C ZNF277 Silent p.C35C 0.20 TCGA-19-5956-01 7 111935998 111935998 C T ZNF277 Missense_Mutation p.S123F 0.12 deleterious(0) probably_damaging(0.918) TCGA-19-5956-01 7 111936294 111936294 G T ZNF277 Missense_Mutation p.E131D 0.10 tolerated(0.61) benign(0.005) TCGA-19-5956-01 7 112124931 112124931 T C LSMEM1 Silent p.Y20Y 0.25 TCGA-19-5956-01 7 112130006 112130006 G T LSMEM1 3'UTR 0.11 TCGA-19-5956-01 7 112462262 112462262 G T C7orf60 Missense_Mutation p.S252Y 0.20 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 7 112723655 112723655 G A GPR85 3'UTR 0.05 TCGA-19-5956-01 7 1131826 1131826 C T GPER1 Silent p.D154D 0.51 TCGA-19-5956-01 7 1132298 1132298 G A GPER1 Missense_Mutation p.A312T 0.47 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 7 113518470 113518470 C A PPP1R3A Missense_Mutation p.D893Y 0.09 deleterious(0) benign(0.071) TCGA-19-5956-01 7 114174717 114174717 G T FOXP2 Nonsense_Mutation p.G72* 0.43 TCGA-19-5956-01 7 11514022 11514022 C T THSD7A Missense_Mutation p.G731S 0.16 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 7 115581074 115581074 A G TFEC Intron 0.26 TCGA-19-5956-01 7 116146029 116146029 T G CAV2 Missense_Mutation p.L115V 0.48 tolerated(1) benign(0.002) TCGA-19-5956-01 7 116165052 116165052 C A CAV1 5'UTR 0.18 TCGA-19-5956-01 7 116339986 116339986 C A MET Missense_Mutation p.S283Y 0.21 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 7 116435844 116435844 T G MET Missense_Mutation p.L1330V 0.05 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 7 116544245 116544245 A C CAPZA2 Missense_Mutation p.E78D 0.09 tolerated(0.09) benign(0.007) TCGA-19-5956-01 7 11676098 11676098 G A THSD7A Silent p.F227F 0.17 TCGA-19-5956-01 7 116862975 116862975 C T ST7 Missense_Mutation p.R567C 0.20 deleterious_low_confidence(0) benign(0.001) TCGA-19-5956-01 7 116870001 116870002 - A ST7 Frame_Shift_Ins p.G510Rfs*8 0.20 TCGA-19-5956-01 7 116918292 116918292 C T WNT2 Missense_Mutation p.V334M 0.36 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 116955168 116955168 G A WNT2 Missense_Mutation p.A182V 0.47 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 7 117022137 117022137 T C ASZ1 Missense_Mutation p.T292A 0.09 tolerated(0.13) benign(0.019) TCGA-19-5956-01 7 117024784 117024784 T C ASZ1 Missense_Mutation p.H228R 0.09 tolerated(0.14) benign(0) TCGA-19-5956-01 7 117232347 117232347 G A CFTR Missense_Mutation p.R709Q 0.45 deleterious(0.01) possibly_damaging(0.842) TCGA-19-5956-01 7 117250704 117250704 C T CFTR Silent p.L1040L 0.11 TCGA-19-5956-01 7 117292924 117292925 - A CFTR Frame_Shift_Ins p.N1303Kfs*6 0.38 TCGA-19-5956-01 7 117417752 117417752 T C CTTNBP2 Missense_Mutation p.Y864C 0.13 tolerated(0.12) benign(0.072) TCGA-19-5956-01 7 117424318 117424318 C A CTTNBP2 Missense_Mutation p.K753N 0.10 deleterious(0.04) possibly_damaging(0.598) TCGA-19-5956-01 7 117431825 117431825 C T CTTNBP2 Silent p.S475S 0.48 TCGA-19-5956-01 7 119914779 119914779 G A KCND2 Silent p.P31P 0.44 TCGA-19-5956-01 7 120381623 120381623 C T KCND2 Silent p.S438S 0.36 TCGA-19-5956-01 7 120591288 120591288 G T ING3 Missense_Mutation p.Q33H 0.19 tolerated(0.09) possibly_damaging(0.77) TCGA-19-5956-01 7 120782026 120782026 G A CPED1 Splice_Site p.X629_splice 0.26 TCGA-19-5956-01 7 120979273 120979273 C T WNT16 Silent p.C324C 0.39 TCGA-19-5956-01 7 121653610 121653610 A T PTPRZ1 Nonsense_Mutation p.K1504* 0.17 TCGA-19-5956-01 7 121960167 121960168 - A CADPS2 3'UTR 0.28 TCGA-19-5956-01 7 122774505 122774505 G T SLC13A1 Silent p.L297L 0.29 TCGA-19-5956-01 7 123109346 123109346 G T IQUB Silent p.I501I 0.17 TCGA-19-5956-01 7 123276980 123276980 G T ASB15 Missense_Mutation p.R571I 0.24 tolerated(0.11) benign(0.17) TCGA-19-5956-01 7 123302304 123302304 G T LMOD2 Nonsense_Mutation p.E222* 0.11 TCGA-19-5956-01 7 123302689 123302689 G T LMOD2 Missense_Mutation p.R350I 0.51 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 7 123302911 123302911 C T LMOD2 Missense_Mutation p.P424L 0.54 deleterious(0.01) benign(0.014) TCGA-19-5956-01 7 123509048 123509048 G A HYAL4 Missense_Mutation p.E241K 0.45 deleterious(0) possibly_damaging(0.881) TCGA-19-5956-01 7 123509116 123509116 T C HYAL4 Silent p.G263G 0.44 TCGA-19-5956-01 7 123593870 123593870 C T SPAM1 Silent p.N82N 0.40 TCGA-19-5956-01 7 123600058 123600058 T C SPAM1 Intron 0.13 TCGA-19-5956-01 7 124387128 124387128 G T GPR37 Silent p.I431I 0.22 TCGA-19-5956-01 7 124464048 124464048 A G POT1 Missense_Mutation p.F625L 0.10 tolerated(0.09) possibly_damaging(0.8) TCGA-19-5956-01 7 124493155 124493155 T G POT1 Missense_Mutation p.K247T 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-19-5956-01 7 126882957 126882957 C T GRM8 Missense_Mutation p.R101H 0.23 tolerated(0.87) probably_damaging(0.997) TCGA-19-5956-01 7 127013708 127013708 A G ZNF800 Missense_Mutation p.I561T 0.22 deleterious(0) benign(0.156) TCGA-19-5956-01 7 127014493 127014493 T C ZNF800 Silent p.K299K 0.46 TCGA-19-5956-01 7 127668657 127668657 C A LRRC4 3'UTR 0.26 TCGA-19-5956-01 7 127978304 127978304 C A RBM28 Missense_Mutation p.G181C 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 127979815 127979815 A G RBM28 Missense_Mutation p.V50A 0.13 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 7 128119287 128119287 G T METTL2B Missense_Mutation p.R93I 0.35 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 128370054 128370054 G A FAM71F1 Missense_Mutation p.G318S 0.06 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 7 128415565 128415565 C T OPN1SW Missense_Mutation p.A94T 0.26 tolerated(0.82) benign(0.02) TCGA-19-5956-01 7 128486844 128486844 G A FLNC Silent p.S1391S 0.15 TCGA-19-5956-01 7 128492785 128492785 C T FLNC Missense_Mutation p.R1995C 0.22 deleterious(0) probably_damaging(0.927) TCGA-19-5956-01 7 128587110 128587110 G T IRF5 Missense_Mutation p.D161Y 0.48 deleterious(0.04) benign(0.029) TCGA-19-5956-01 7 129091546 129091546 C T STRIP2 Missense_Mutation p.R123W 0.16 deleterious(0.04) possibly_damaging(0.773) TCGA-19-5956-01 7 129122852 129122852 G A STRIP2 Missense_Mutation p.R740H 0.49 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 7 129688976 129688976 G A ZC3HC1 Missense_Mutation p.T52M 0.23 tolerated(0.07) benign(0.026) TCGA-19-5956-01 7 129856019 129856019 G A SSMEM1 Silent p.T148T 0.15 TCGA-19-5956-01 7 129919472 129919472 A C CPA2 Missense_Mutation p.K319N 0.19 deleterious(0.02) benign(0.014) TCGA-19-5956-01 7 129951961 129951961 C A CPA4 Silent p.V359V 0.17 TCGA-19-5956-01 7 130138282 130138282 C T MEST Missense_Mutation p.R167W 0.45 deleterious(0.04) benign(0.015) TCGA-19-5956-01 7 130418151 130418151 G A KLF14 Missense_Mutation p.T237M 0.21 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 7 131071888 131071888 C A MKLN1 Missense_Mutation p.L60I 0.22 deleterious(0.01) possibly_damaging(0.889) TCGA-19-5956-01 7 131128308 131128308 C T MKLN1 Silent p.S414S 0.25 TCGA-19-5956-01 7 131191076 131191076 C T PODXL Silent p.K418K 0.45 TCGA-19-5956-01 7 131853296 131853296 G T PLXNA4 Silent p.G1351G 0.21 TCGA-19-5956-01 7 133164848 133164848 G A EXOC4 Missense_Mutation p.R458Q 0.39 tolerated(0.19) benign(0.034) TCGA-19-5956-01 7 133943141 133943141 C T LRGUK Silent p.T777T 0.43 TCGA-19-5956-01 7 133984347 133984347 C T SLC35B4 Missense_Mutation p.A201T 0.14 tolerated(0.28) benign(0.418) TCGA-19-5956-01 7 134132765 134132765 C T AKR1B1 Silent p.A236A 0.35 TCGA-19-5956-01 7 134346785 134346785 G A BPGM Missense_Mutation p.E176K 0.25 tolerated(0.33) possibly_damaging(0.562) TCGA-19-5956-01 7 134882769 134882769 C A WDR91 Missense_Mutation p.E342D 0.09 tolerated(0.11) probably_damaging(0.938) TCGA-19-5956-01 7 135258552 135258552 G A NUP205 Missense_Mutation p.A108T 0.50 deleterious(0) probably_damaging(0.977) TCGA-19-5956-01 7 135269729 135269729 G T NUP205 Missense_Mutation p.D398Y 0.57 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 7 135291554 135291554 C A NUP205 Silent p.I987I 0.41 TCGA-19-5956-01 7 135311088 135311088 G A NUP205 Missense_Mutation p.R1591H 0.15 tolerated(0.11) possibly_damaging(0.846) TCGA-19-5956-01 7 135433333 135433333 T C FAM180A 5'UTR 0.25 TCGA-19-5956-01 7 136849055 136849055 C T hsa-mir-490 Intron 0.23 TCGA-19-5956-01 7 137269978 137269978 C A DGKI Nonsense_Mutation p.E514* 0.50 TCGA-19-5956-01 7 138262320 138262320 C T TRIM24 Missense_Mutation p.S748F 0.38 deleterious(0.03) possibly_damaging(0.807) TCGA-19-5956-01 7 138437404 138437404 G A ATP6V0A4 Missense_Mutation p.A332V 0.24 tolerated(0.05) benign(0.155) TCGA-19-5956-01 7 138603308 138603308 C T KIAA1549 Missense_Mutation p.S355N 0.50 tolerated(0.1) benign(0.096) TCGA-19-5956-01 7 138874091 138874091 T C TTC26 Silent p.H526H 0.17 TCGA-19-5956-01 7 138968177 138968177 G T UBN2 Missense_Mutation p.K842N 0.07 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-19-5956-01 7 139060826 139060826 G A C7orf55-LUC7L2 Missense_Mutation p.R27Q 0.40 tolerated(0.19) benign(0.121) TCGA-19-5956-01 7 139164903 139164903 G A KLRG2 Missense_Mutation p.A283V 0.46 tolerated(0.08) benign(0.433) TCGA-19-5956-01 7 139225089 139225089 C T CLEC2L Silent p.C96C 0.26 TCGA-19-5956-01 7 139285230 139285230 C T HIPK2 Missense_Mutation p.V790M 0.22 deleterious(0.01) possibly_damaging(0.534) TCGA-19-5956-01 7 139798740 139798740 C A KDM7A Missense_Mutation p.K619N 0.22 deleterious(0.02) probably_damaging(0.949) TCGA-19-5956-01 7 139824484 139824484 C A KDM7A Missense_Mutation p.D330Y 0.50 deleterious(0) probably_damaging(0.97) TCGA-19-5956-01 7 140035263 140035263 C T SLC37A3 Silent p.R478R 0.07 TCGA-19-5956-01 7 140439617 140439617 G A BRAF Missense_Mutation p.P708S 0.10 deleterious(0.02) benign(0.079) TCGA-19-5956-01 7 141351367 141351367 G A AGK Silent p.T363T 0.16 TCGA-19-5956-01 7 141408595 141408595 A - WEE2 Frame_Shift_Del p.K13Nfs*2 0.15 TCGA-19-5956-01 7 141464077 141464077 G T TAS2R3 Missense_Mutation p.R40I 0.19 deleterious(0) possibly_damaging(0.794) TCGA-19-5956-01 7 141539255 141539255 G T PRSS37 Missense_Mutation p.S20Y 0.17 tolerated(0.25) benign(0.328) TCGA-19-5956-01 7 141540892 141540892 G T PRSS37 5'UTR 0.15 TCGA-19-5956-01 7 141618882 141618882 G T OR9A4 Missense_Mutation p.E69D 0.13 tolerated(0.18) benign(0.063) TCGA-19-5956-01 7 141618966 141618966 T C OR9A4 Silent p.C97C 0.21 TCGA-19-5956-01 7 141672682 141672682 G A TAS2R38 Silent p.L270L 0.12 TCGA-19-5956-01 7 141758058 141758058 G A MGAM Missense_Mutation p.R1250H 0.44 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 14188795 14188795 G A DGKB Silent p.C792C 0.33 TCGA-19-5956-01 7 141896534 141896534 C A RP11-1220K2.2 Missense_Mutation p.A1517D 0.24 probably_damaging(0.982) TCGA-19-5956-01 7 142008602 142008602 G T TRBV3-1 Missense_Mutation p.Q25H 0.09 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 142099598 142099598 G A TRBV7-8 Silent p.F68F 0.18 TCGA-19-5956-01 7 142144065 142144065 C T TRBV6-7 Missense_Mutation p.C7Y 0.07 tolerated(0.24) benign(0.08) TCGA-19-5956-01 7 142168511 142168511 T C TRBV5-4 Missense_Mutation p.E71G 0.11 tolerated(0.95) benign(0.001) TCGA-19-5956-01 7 142206623 142206623 C A TRBV10-2 Nonsense_Mutation p.E78* 0.14 TCGA-19-5956-01 7 142448558 142448558 G T TRBV29-1 Missense_Mutation p.R51L 0.09 tolerated(0.09) benign(0.283) TCGA-19-5956-01 7 142561955 142561955 C T EPHB6 Missense_Mutation p.R133C 0.43 deleterious(0.01) probably_damaging(0.973) TCGA-19-5956-01 7 142622824 142622824 G T TRPV5 Missense_Mutation p.L308M 0.20 deleterious(0.02) probably_damaging(0.996) TCGA-19-5956-01 7 142836773 142836773 C A PIP 3'UTR 0.13 TCGA-19-5956-01 7 142988721 142988721 G A CASP2 Missense_Mutation p.E55K 0.48 deleterious(0.01) probably_damaging(0.994) TCGA-19-5956-01 7 143020457 143020457 C T CLCN1 Missense_Mutation p.S251F 0.07 deleterious(0) probably_damaging(0.918) TCGA-19-5956-01 7 143036348 143036348 C A CLCN1 Missense_Mutation p.F468L 0.12 deleterious(0.03) probably_damaging(0.978) TCGA-19-5956-01 7 143044013 143044013 G T CLCN1 Missense_Mutation p.D792Y 0.45 deleterious(0) benign(0.304) TCGA-19-5956-01 7 143044042 143044042 G T CLCN1 Missense_Mutation p.E801D 0.11 tolerated(0.15) benign(0.03) TCGA-19-5956-01 7 143096442 143096442 C A EPHA1 Missense_Mutation p.Q300H 0.22 tolerated(1) benign(0) TCGA-19-5956-01 7 143098629 143098629 G A EPHA1 Missense_Mutation p.R74C 0.10 deleterious(0.01) possibly_damaging(0.564) TCGA-19-5956-01 7 143140742 143140742 G A TAS2R60 Missense_Mutation p.R66H 0.46 deleterious(0.02) probably_damaging(0.949) TCGA-19-5956-01 7 14378303 14378303 G T DGKB Silent p.I654I 0.10 TCGA-19-5956-01 7 143955955 143955955 A T OR2A7 Missense_Mutation p.I256N 0.13 deleterious(0) possibly_damaging(0.908) TCGA-19-5956-01 7 144015698 144015698 C T OR2A1 Missense_Mutation p.L161F 0.27 tolerated(0.09) possibly_damaging(0.656) TCGA-19-5956-01 7 144061051 144061051 C A ARHGEF5 Missense_Mutation p.T430N 0.34 deleterious(0.02) benign(0.243) TCGA-19-5956-01 7 14647102 14647102 G A DGKB Missense_Mutation p.P465S 0.35 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 1484385 1484385 G A MICALL2 Missense_Mutation p.L441F 0.51 deleterious(0.05) benign(0.423) TCGA-19-5956-01 7 148457552 148457552 C A CUL1 Missense_Mutation p.F251L 0.45 deleterious(0.03) benign(0.424) TCGA-19-5956-01 7 148513849 148513849 C T EZH2 Missense_Mutation p.E478K 0.17 deleterious(0) possibly_damaging(0.848) TCGA-19-5956-01 7 148514332 148514332 C T EZH2 Silent p.G464G 0.31 TCGA-19-5956-01 7 148514384 148514384 A G EZH2 Missense_Mutation p.V447A 0.33 tolerated(0.29) benign(0.237) TCGA-19-5956-01 7 148515010 148515010 T G EZH2 Missense_Mutation p.K400T 0.06 tolerated(0.29) possibly_damaging(0.907) TCGA-19-5956-01 7 148529754 148529754 G T EZH2 Missense_Mutation p.S112Y 0.17 deleterious(0.01) probably_damaging(0.942) TCGA-19-5956-01 7 148543653 148543653 C T EZH2 Missense_Mutation p.R52K 0.23 tolerated(0.76) benign(0.028) TCGA-19-5956-01 7 148716252 148716252 T G PDIA4 Missense_Mutation p.K103Q 0.20 deleterious(0.03) probably_damaging(0.953) TCGA-19-5956-01 7 148718119 148718119 G A PDIA4 Missense_Mutation p.A70V 0.20 tolerated(0.28) benign(0.003) TCGA-19-5956-01 7 148769515 148769515 C A ZNF786 Missense_Mutation p.D117Y 0.27 deleterious(0.05) benign(0.3) TCGA-19-5956-01 7 148876485 148876485 C T ZNF398 Silent p.G507G 0.25 TCGA-19-5956-01 7 149152476 149152476 G A ZNF777 Missense_Mutation p.T213M 0.38 tolerated(0.1) benign(0.203) TCGA-19-5956-01 7 149420838 149420838 G A KRBA1 Silent p.A262A 0.18 TCGA-19-5956-01 7 149477518 149477518 G A SSPO RNA 0.38 TCGA-19-5956-01 7 149505641 149505641 G A SSPO RNA 0.62 TCGA-19-5956-01 7 149519687 149519687 G T SSPO RNA 0.23 TCGA-19-5956-01 7 149520478 149520478 C T SSPO RNA 0.32 TCGA-19-5956-01 7 150069600 150069600 G A REPIN1 Missense_Mutation p.V481M 0.46 tolerated(0.13) probably_damaging(0.986) TCGA-19-5956-01 7 150217651 150217651 G A GIMAP7 Missense_Mutation p.E197K 0.47 tolerated(0.24) benign(0.009) TCGA-19-5956-01 7 150417244 150417244 G T GIMAP1 Missense_Mutation p.R51I 0.19 deleterious(0.02) possibly_damaging(0.873) TCGA-19-5956-01 7 150501953 150501953 C A TMEM176A Silent p.I235I 0.35 TCGA-19-5956-01 7 150553762 150553762 C T AOC1 Silent p.T68T 0.36 TCGA-19-5956-01 7 150554554 150554554 C T AOC1 Silent p.S332S 0.60 TCGA-19-5956-01 7 150696075 150696075 C T NOS3 Silent p.F286F 0.05 TCGA-19-5956-01 7 150699032 150699032 C A NOS3 Missense_Mutation p.F542L 0.44 tolerated(0.16) probably_damaging(0.987) TCGA-19-5956-01 7 150759053 150759053 C T SLC4A2 5'UTR 0.42 TCGA-19-5956-01 7 150763981 150763981 G A SLC4A2 Silent p.V289V 0.29 TCGA-19-5956-01 7 150767882 150767882 G A SLC4A2 Missense_Mutation p.A545T 0.12 deleterious(0.04) benign(0.142) TCGA-19-5956-01 7 150878546 150878546 C A ASB10 Splice_Site p.X195_splice 0.15 TCGA-19-5956-01 7 150932166 150932166 G A CHPF2 Missense_Mutation p.R99H 0.22 tolerated(0.07) probably_damaging(0.918) TCGA-19-5956-01 7 151093008 151093008 C T WDR86 Missense_Mutation p.G194S 0.29 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 7 151478243 151478243 C A PRKAG2 Missense_Mutation p.R154I 0.09 tolerated_low_confidence(0.08) benign(0.043) TCGA-19-5956-01 7 151791477 151791477 C A GALNT11 Missense_Mutation p.F55L 0.23 tolerated(0.11) benign(0.001) TCGA-19-5956-01 7 151845971 151845971 C T KMT2C Silent p.P4347P 0.46 TCGA-19-5956-01 7 151851440 151851440 C T KMT2C Silent p.R4017R 0.54 TCGA-19-5956-01 7 151859222 151859222 G A KMT2C Nonsense_Mutation p.Q3814* 0.53 TCGA-19-5956-01 7 151879672 151879672 C T KMT2C Missense_Mutation p.R1758H 0.20 probably_damaging(0.999) TCGA-19-5956-01 7 151917773 151917773 C A KMT2C Missense_Mutation p.G1183W 0.20 probably_damaging(0.999) TCGA-19-5956-01 7 151945341 151945341 C T KMT2C Silent p.Q726Q 0.12 TCGA-19-5956-01 7 1526651 1526651 G A INTS1 Silent p.C911C 0.25 TCGA-19-5956-01 7 1538730 1538730 G A INTS1 Missense_Mutation p.R340C 0.31 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 7 1542695 1542695 G A INTS1 Missense_Mutation p.A64V 0.41 deleterious(0.03) benign(0.03) TCGA-19-5956-01 7 154561175 154561175 C T DPP6 Missense_Mutation p.T311M 0.17 deleterious(0.03) probably_damaging(0.941) TCGA-19-5956-01 7 154564587 154564587 C T DPP6 Silent p.H357H 0.36 TCGA-19-5956-01 7 155090012 155090012 A G INSIG1 Missense_Mutation p.D6G 0.22 tolerated_low_confidence(0.08) benign(0.118) TCGA-19-5956-01 7 155093360 155093360 G A INSIG1 Missense_Mutation p.R166H 0.45 deleterious(0.01) possibly_damaging(0.548) TCGA-19-5956-01 7 155556551 155556551 C T RBM33 Missense_Mutation p.R1009W 0.12 deleterious(0.01) unknown(0) TCGA-19-5956-01 7 156451229 156451229 G T RNF32 Missense_Mutation p.D217Y 0.26 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 7 156752807 156752807 T G NOM1 Missense_Mutation p.L524W 0.10 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 7 156755814 156755814 C T NOM1 Missense_Mutation p.A619V 0.37 deleterious(0.04) benign(0.074) TCGA-19-5956-01 7 156758997 156758997 C A NOM1 Silent p.I689I 0.17 TCGA-19-5956-01 7 157926500 157926500 G A PTPRN2 Silent p.N475N 0.14 TCGA-19-5956-01 7 157926550 157926550 G A PTPRN2 Nonsense_Mutation p.Q459* 0.52 TCGA-19-5956-01 7 158447860 158447860 C T NCAPG2 Missense_Mutation p.E866K 0.36 deleterious(0.02) benign(0.08) TCGA-19-5956-01 7 158473475 158473475 G A NCAPG2 Missense_Mutation p.R320W 0.21 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 158552178 158552178 G A ESYT2 Missense_Mutation p.P521L 0.47 deleterious(0.01) probably_damaging(0.983) TCGA-19-5956-01 7 1589541 1589541 A G TMEM184A Missense_Mutation p.V198A 0.16 tolerated(0.35) benign(0.02) TCGA-19-5956-01 7 16745690 16745690 G A BZW2 Missense_Mutation p.E413K 0.08 tolerated(0.08) unknown(0) TCGA-19-5956-01 7 16839408 16839408 A G AGR2 Missense_Mutation p.I97T 0.14 deleterious(0) possibly_damaging(0.885) TCGA-19-5956-01 7 16839434 16839434 C A AGR2 Missense_Mutation p.K88N 0.28 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 7 17833622 17833622 A G SNX13 3'UTR 0.42 TCGA-19-5956-01 7 17841216 17841216 C T SNX13 Missense_Mutation p.D765N 0.24 tolerated(0.38) probably_damaging(0.927) TCGA-19-5956-01 7 17915400 17915400 C T SNX13 Missense_Mutation p.D152N 0.14 deleterious(0.01) possibly_damaging(0.88) TCGA-19-5956-01 7 18687618 18687618 G A HDAC9 Missense_Mutation p.A416T 0.21 tolerated(0.89) benign(0.003) TCGA-19-5956-01 7 18868812 18868812 G A HDAC9 Missense_Mutation p.G784D 0.40 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 20198830 20198830 G T MACC1 Missense_Mutation p.T385N 0.46 deleterious(0.03) probably_damaging(0.945) TCGA-19-5956-01 7 20441347 20441347 C A ITGB8 Missense_Mutation p.L429I 0.43 tolerated(0.17) possibly_damaging(0.843) TCGA-19-5956-01 7 20685747 20685747 G A ABCB5 Missense_Mutation p.G323R 0.39 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 20721211 20721211 T C ABCB5 Silent p.D597D 0.22 TCGA-19-5956-01 7 20721279 20721279 T G ABCB5 Missense_Mutation p.V620G 0.13 deleterious(0.01) benign(0.343) TCGA-19-5956-01 7 20782514 20782514 G A ABCB5 Silent p.G1013G 0.20 TCGA-19-5956-01 7 20793028 20793028 G A ABCB5 Missense_Mutation p.G1159S 0.48 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 7 20825397 20825397 T G SP8 Silent p.G13G 0.18 TCGA-19-5956-01 7 21469317 21469317 A G SP4 Silent p.Q178Q 0.41 TCGA-19-5956-01 7 21470055 21470055 G A SP4 Silent p.S424S 0.21 TCGA-19-5956-01 7 21550997 21550997 C T SP4 3'UTR 0.67 TCGA-19-5956-01 7 21583131 21583131 C A DNAH11 Missense_Mutation p.L90I 0.20 benign(0.046) TCGA-19-5956-01 7 21775288 21775288 C T DNAH11 Missense_Mutation p.R2498C 0.33 benign(0.049) TCGA-19-5956-01 7 21788202 21788202 C T DNAH11 Missense_Mutation p.R2846C 0.26 probably_damaging(0.988) TCGA-19-5956-01 7 21789323 21789323 A G DNAH11 Missense_Mutation p.T2908A 0.18 benign(0.011) TCGA-19-5956-01 7 21856273 21856273 G T DNAH11 Missense_Mutation p.K3514N 0.34 possibly_damaging(0.584) TCGA-19-5956-01 7 21906270 21906270 G A DNAH11 Silent p.T3900T 0.45 TCGA-19-5956-01 7 21939697 21939697 C T DNAH11 Missense_Mutation p.P4428L 0.18 possibly_damaging(0.793) TCGA-19-5956-01 7 2317807 2317807 G A SNX8 Silent p.T76T 0.44 TCGA-19-5956-01 7 23213792 23213792 C A KLHL7 Missense_Mutation p.L546I 0.06 tolerated(0.31) possibly_damaging(0.527) TCGA-19-5956-01 7 23286464 23286464 G A GPNMB 5'UTR 0.29 TCGA-19-5956-01 7 23348978 23348978 G A MALSU1 Missense_Mutation p.S174N 0.50 tolerated(0.33) benign(0.003) TCGA-19-5956-01 7 23387234 23387234 G T IGF2BP3 Missense_Mutation p.A268D 0.09 deleterious(0.03) benign(0.334) TCGA-19-5956-01 7 23556145 23556145 G A TRA2A Missense_Mutation p.S58L 0.42 tolerated_low_confidence(0.12) benign(0.32) TCGA-19-5956-01 7 23751882 23751882 G T STK31 Missense_Mutation p.D43Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 23775199 23775199 A C STK31 Missense_Mutation p.K176Q 0.42 tolerated(0.09) possibly_damaging(0.889) TCGA-19-5956-01 7 23810736 23810736 G T STK31 Missense_Mutation p.S609I 0.21 deleterious(0) possibly_damaging(0.846) TCGA-19-5956-01 7 2473276 2473276 C T CHST12 Silent p.I334I 0.09 TCGA-19-5956-01 7 24742439 24742439 G A DFNA5 Silent p.S399S 0.31 TCGA-19-5956-01 7 24905693 24905693 C A OSBPL3 Missense_Mutation p.R182M 0.42 deleterious(0.02) possibly_damaging(0.827) TCGA-19-5956-01 7 2611939 2611939 C A IQCE Missense_Mutation p.L125I 0.20 tolerated(0.44) possibly_damaging(0.598) TCGA-19-5956-01 7 26224555 26224555 G T NFE2L3 Missense_Mutation p.D413Y 0.12 deleterious(0) benign(0.332) TCGA-19-5956-01 7 27140307 27140307 G A HOXA2 3'UTR 0.11 TCGA-19-5956-01 7 27203151 27203151 C T HOXA9 3'UTR 0.21 TCGA-19-5956-01 7 2752394 2752394 G A AMZ1 Missense_Mutation p.S460N 0.22 tolerated_low_confidence(0.67) benign(0.002) TCGA-19-5956-01 7 27825088 27825088 G A TAX1BP1 Missense_Mutation p.D278N 0.53 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 27831685 27831685 C T TAX1BP1 Missense_Mutation p.R367W 0.44 deleterious(0.02) benign(0.014) TCGA-19-5956-01 7 27934954 27934954 G A JAZF1 Silent p.S90S 0.23 TCGA-19-5956-01 7 28547252 28547252 C T CREB5 Missense_Mutation p.T63M 0.22 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 7 28996485 28996485 G A AC005013.5 5'Flank 0.53 TCGA-19-5956-01 7 28996486 28996486 G T AC005013.5 5'Flank 0.22 TCGA-19-5956-01 7 29070250 29070250 G T CPVL Silent p.I421I 0.15 TCGA-19-5956-01 7 29105660 29105660 G T CPVL Nonsense_Mutation p.Y314* 0.15 TCGA-19-5956-01 7 2979507 2979507 C A CARD11 Missense_Mutation p.R247I 0.09 deleterious(0) possibly_damaging(0.852) TCGA-19-5956-01 7 2984024 2984024 G A CARD11 Missense_Mutation p.T169M 0.53 tolerated(0.16) benign(0.011) TCGA-19-5956-01 7 29915574 29915574 C T WIPF3 Silent p.I73I 0.38 TCGA-19-5956-01 7 30094444 30094444 G T PLEKHA8 Nonsense_Mutation p.E306* 0.08 TCGA-19-5956-01 7 30169045 30169045 C A PLEKHA8 3'UTR 0.29 TCGA-19-5956-01 7 30492153 30492153 C A NOD1 Missense_Mutation p.D294Y 0.21 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 30538435 30538435 G T GGCT Missense_Mutation p.S136Y 0.08 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 31142924 31142924 G T ADCYAP1R1 Nonsense_Mutation p.E402* 0.14 TCGA-19-5956-01 7 31682353 31682353 G T CCDC129 Missense_Mutation p.D483Y 0.24 deleterious(0.01) probably_damaging(0.969) TCGA-19-5956-01 7 31682788 31682788 A T CCDC129 Missense_Mutation p.N628Y 0.45 tolerated(1) benign(0.108) TCGA-19-5956-01 7 31829822 31829822 G T PDE1C Intron 0.16 TCGA-19-5956-01 7 31864484 31864484 G A PDE1C Missense_Mutation p.S528L 0.06 tolerated(0.06) possibly_damaging(0.588) TCGA-19-5956-01 7 33057141 33057141 G A NT5C3A Silent p.I206I 0.14 TCGA-19-5956-01 7 34125493 34125493 G T BMPER Missense_Mutation p.D512Y 0.09 deleterious(0.01) probably_damaging(0.972) TCGA-19-5956-01 7 35131529 35131529 T C DPY19L2P1 RNA 0.15 TCGA-19-5956-01 7 35144360 35144360 A G DPY19L2P1 RNA 0.11 TCGA-19-5956-01 7 35280583 35280583 C T TBX20 Missense_Mutation p.A241T 0.48 tolerated(0.33) benign(0.18) TCGA-19-5956-01 7 35919456 35919456 T G SEPT7 Missense_Mutation p.F180C 0.38 tolerated(0.06) possibly_damaging(0.589) TCGA-19-5956-01 7 36492308 36492308 C T ANLN 3'UTR 0.46 TCGA-19-5956-01 7 3658864 3658864 G A SDK1 Missense_Mutation p.E151K 0.27 deleterious(0.02) possibly_damaging(0.531) TCGA-19-5956-01 7 36927225 36927225 G A ELMO1 Missense_Mutation p.R552C 0.43 deleterious(0) probably_damaging(0.945) TCGA-19-5956-01 7 36934500 36934500 G A ELMO1 Silent p.S520S 0.38 TCGA-19-5956-01 7 36934525 36934525 G T ELMO1 Missense_Mutation p.T512N 0.40 tolerated(0.23) benign(0.06) TCGA-19-5956-01 7 37311483 37311483 C T ELMO1 Missense_Mutation p.R66H 0.49 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 37916583 37916583 G A NME8 Missense_Mutation p.R323Q 0.36 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 7 37924804 37924804 A C NME8 Missense_Mutation p.Q399H 0.13 tolerated(0.07) possibly_damaging(0.722) TCGA-19-5956-01 7 38256676 38256676 G A STARD3NL Silent p.S144S 0.19 TCGA-19-5956-01 7 38301772 38301772 C A TRGC1 Missense_Mutation p.D127Y 0.05 tolerated(0.37) benign(0.048) TCGA-19-5956-01 7 40037098 40037098 G A CDK13 Missense_Mutation p.R626Q 0.22 tolerated(0.13) benign(0.029) TCGA-19-5956-01 7 40132607 40132607 G A CDK13 Silent p.S1153S 0.06 TCGA-19-5956-01 7 40134317 40134317 G T CDK13 Missense_Mutation p.R1426I 0.24 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-19-5956-01 7 4088996 4088996 G A SDK1 Silent p.P873P 0.11 TCGA-19-5956-01 7 41739682 41739682 C A INHBA Missense_Mutation p.E97D 0.10 tolerated(0.11) benign(0.005) TCGA-19-5956-01 7 42005486 42005486 G A GLI3 Missense_Mutation p.S1062L 0.43 tolerated(0.64) benign(0.001) TCGA-19-5956-01 7 42006050 42006050 C T GLI3 Missense_Mutation p.R874H 0.22 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 42007224 42007224 C T GLI3 Missense_Mutation p.A801T 0.18 tolerated(0.56) possibly_damaging(0.793) TCGA-19-5956-01 7 42262814 42262814 C A GLI3 Missense_Mutation p.K13N 0.09 deleterious_low_confidence(0) possibly_damaging(0.628) TCGA-19-5956-01 7 4304895 4304895 C T SDK1 Missense_Mutation p.A2174V 0.12 tolerated(0.09) benign(0.006) TCGA-19-5956-01 7 43916351 43916351 C A URGCP Missense_Mutation p.R904I 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 7 44054313 44054313 C A SPDYE1 3'Flank 0.11 TCGA-19-5956-01 7 44120451 44120451 G A POLM Missense_Mutation p.R85C 0.53 tolerated(0.15) benign(0.007) TCGA-19-5956-01 7 44152679 44152679 C T AEBP1 Missense_Mutation p.P887S 0.43 deleterious(0.03) possibly_damaging(0.876) TCGA-19-5956-01 7 44157336 44157336 G A POLD2 Silent p.N116N 0.49 TCGA-19-5956-01 7 44561318 44561318 C T NPC1L1 Silent p.S982S 0.22 TCGA-19-5956-01 7 44579684 44579684 C T NPC1L1 Silent p.S104S 0.26 TCGA-19-5956-01 7 44620668 44620668 A C TMED4 Intron 0.20 TCGA-19-5956-01 7 44664107 44664107 G A OGDH Silent p.S55S 0.16 TCGA-19-5956-01 7 44706361 44706361 C A OGDH Missense_Mutation p.L182I 0.09 deleterious(0.01) benign(0.257) TCGA-19-5956-01 7 44721326 44721326 C T OGDH Missense_Mutation p.S405F 0.20 deleterious(0.01) possibly_damaging(0.892) TCGA-19-5956-01 7 44739760 44739760 C T OGDH Silent p.F817F 0.20 TCGA-19-5956-01 7 44747306 44747306 G T OGDH Silent p.R974R 0.11 TCGA-19-5956-01 7 45009405 45009405 G A MYO1G Silent p.L468L 0.09 TCGA-19-5956-01 7 47336760 47336760 C A TNS3 Missense_Mutation p.S1199I 0.17 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 47872801 47872801 G A PKD1L1 Missense_Mutation p.A2075V 0.35 tolerated(0.14) benign(0.019) TCGA-19-5956-01 7 48018134 48018134 A C HUS1 Missense_Mutation p.I79M 0.51 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 48147845 48147845 G A UPP1 Missense_Mutation p.R275H 0.44 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 48315795 48315795 G T ABCA13 Missense_Mutation p.A2178S 0.19 benign(0) TCGA-19-5956-01 7 4845233 4845233 G A RADIL Missense_Mutation p.P752S 0.10 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 7 4899722 4899722 C T PAPOLB Missense_Mutation p.E573K 0.16 tolerated(0.25) benign(0.317) TCGA-19-5956-01 7 51095752 51095752 C T COBL Missense_Mutation p.R1014H 0.44 tolerated(0.6) benign(0) TCGA-19-5956-01 7 51096753 51096753 G A COBL Silent p.N680N 0.22 TCGA-19-5956-01 7 51096886 51096886 G A COBL Missense_Mutation p.S636L 0.23 tolerated(0.14) benign(0.004) TCGA-19-5956-01 7 55214335 55214335 C A EGFR Missense_Mutation p.P154H 0.20 deleterious(0.02) probably_damaging(0.997) TCGA-19-5956-01 7 55466225 55466225 G A LANCL2 Silent p.R144R 0.51 TCGA-19-5956-01 7 55540706 55540706 C T VOPP1 Missense_Mutation p.D121N 0.17 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-19-5956-01 7 55755504 55755504 G A RNU6-389P 3'Flank 0.40 TCGA-19-5956-01 7 55863599 55863599 G A SEPT14 3'UTR 0.13 TCGA-19-5956-01 7 57187928 57187928 G T ZNF479 Silent p.I398I 0.26 TCGA-19-5956-01 7 57522819 57522819 G A ZNF716 Silent p.E69E 0.13 TCGA-19-5956-01 7 57528557 57528557 A C ZNF716 Missense_Mutation p.K130N 0.14 deleterious(0.01) benign(0.372) TCGA-19-5956-01 7 6054938 6054938 G A AIMP2 Silent p.T99T 0.50 TCGA-19-5956-01 7 6185165 6185165 T C USP42 Missense_Mutation p.Y337H 0.10 tolerated(0.09) probably_damaging(0.999) TCGA-19-5956-01 7 6370110 6370110 C A FAM220A Nonsense_Mutation p.E226* 0.37 TCGA-19-5956-01 7 64389163 64389163 A G ZNF273 Missense_Mutation p.Y486C 0.35 deleterious(0.02) probably_damaging(0.997) TCGA-19-5956-01 7 64439192 64439192 C A ZNF117 Nonsense_Mutation p.E253* 0.60 TCGA-19-5956-01 7 64452432 64452432 C T ERV3-1 Missense_Mutation p.E325K 0.21 tolerated(0.56) benign(0.03) TCGA-19-5956-01 7 64528879 64528879 A C SNORA22 3'Flank 0.30 TCGA-19-5956-01 7 65225119 65225119 C T SNORA15 RNA 0.19 TCGA-19-5956-01 7 65228310 65228310 G A SNORA15 3'Flank 0.11 TCGA-19-5956-01 7 65546849 65546849 C T ASL Silent p.F24F 0.26 TCGA-19-5956-01 7 65817504 65817504 G A TPST1 Missense_Mutation p.E353K 0.09 tolerated(0.24) benign(0.001) TCGA-19-5956-01 7 65842377 65842377 C A LINC00174 RNA 0.50 TCGA-19-5956-01 7 66104158 66104158 A G KCTD7 Missense_Mutation p.H270R 0.13 tolerated(0.33) benign(0.366) TCGA-19-5956-01 7 66406981 66406981 C A TMEM248 Silent p.I43I 0.23 TCGA-19-5956-01 7 66764381 66764381 G A Y_RNA 5'Flank 0.31 TCGA-19-5956-01 7 6731028 6731028 A C ZNF12 Missense_Mutation p.H515Q 0.16 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 7 6732327 6732327 G T ZNF12 Silent p.V82V 0.08 TCGA-19-5956-01 7 6737347 6737347 C T ZNF12 Missense_Mutation p.M37I 0.23 deleterious(0.04) benign(0.257) TCGA-19-5956-01 7 6805413 6805413 G T RSPH10B2 Missense_Mutation p.G217V 0.22 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 71175786 71175786 C T WBSCR17 Missense_Mutation p.A514V 0.35 tolerated(0.38) benign(0.028) TCGA-19-5956-01 7 72178662 72178662 C A TYW1B Missense_Mutation p.E55D 0.12 tolerated(0.1) benign(0.17) TCGA-19-5956-01 7 72193851 72193851 C T TYW1B 3'UTR 0.22 TCGA-19-5956-01 7 72267420 72267420 C A TYW1B Nonsense_Mutation p.E281* 0.07 TCGA-19-5956-01 7 72419640 72419640 A G POM121 3'UTR 0.20 TCGA-19-5956-01 7 7283245 7283245 C T C1GALT1 Missense_Mutation p.R327C 0.48 deleterious(0) benign(0.317) TCGA-19-5956-01 7 72861597 72861597 G A BAZ1B Nonsense_Mutation p.R1281* 0.50 TCGA-19-5956-01 7 72891580 72891580 A C BAZ1B Missense_Mutation p.F737L 0.52 tolerated(0.71) benign(0.076) TCGA-19-5956-01 7 72954259 72954259 C T BCL7B Missense_Mutation p.R130H 0.11 deleterious(0.04) possibly_damaging(0.719) TCGA-19-5956-01 7 72984997 72984997 G A TBL2 Missense_Mutation p.A395V 0.44 tolerated(0.59) benign(0.024) TCGA-19-5956-01 7 73150932 73150932 C T ABHD11 Missense_Mutation p.R302H 0.35 tolerated(0.05) benign(0.053) TCGA-19-5956-01 7 73961501 73961501 C T GTF2IRD1 Silent p.L633L 0.10 TCGA-19-5956-01 7 75045357 75045357 G A POM121C 3'Flank 0.31 TCGA-19-5956-01 7 75051139 75051139 G T POM121C Missense_Mutation p.A799D 0.14 deleterious(0) possibly_damaging(0.624) TCGA-19-5956-01 7 75178196 75178196 C A HIP1 Missense_Mutation p.R800I 0.12 deleterious(0) probably_damaging(0.963) TCGA-19-5956-01 7 75190689 75190689 G A HIP1 Nonsense_Mutation p.R379* 0.45 TCGA-19-5956-01 7 75443017 75443017 G A CCL24 Missense_Mutation p.T6I 0.25 deleterious(0) possibly_damaging(0.799) TCGA-19-5956-01 7 7559713 7559713 G A COL28A1 Nonsense_Mutation p.R265* 0.10 TCGA-19-5956-01 7 75657990 75657990 G A STYXL1 Silent p.S45S 0.21 TCGA-19-5956-01 7 75689783 75689783 C T MDH2 Silent p.I174I 0.42 TCGA-19-5956-01 7 76144515 76144515 C T UPK3B Missense_Mutation p.P304S 0.47 deleterious_low_confidence(0) probably_damaging(0.932) TCGA-19-5956-01 7 7625431 7625431 G A MIOS Missense_Mutation p.V605I 0.12 tolerated(0.1) possibly_damaging(0.616) TCGA-19-5956-01 7 7634628 7634628 T C MIOS Silent p.V687V 0.52 TCGA-19-5956-01 7 7634764 7634764 G T MIOS Splice_Site p.X732_splice 0.39 TCGA-19-5956-01 7 76829118 76829118 G A FGL2 5'UTR 0.09 TCGA-19-5956-01 7 76940767 76940767 C T GSAP Splice_Site p.X825_splice 0.22 TCGA-19-5956-01 7 77026729 77026729 G T GSAP Missense_Mutation p.L83I 0.10 deleterious(0.02) benign(0.046) TCGA-19-5956-01 7 77256569 77256569 C T PTPN12 Missense_Mutation p.R525C 0.28 tolerated_low_confidence(0.14) benign(0.001) TCGA-19-5956-01 7 77797390 77797390 G A MAGI2 Silent p.A813A 0.53 TCGA-19-5956-01 7 77998505 77998505 G A MAGI2 Silent p.I357I 0.56 TCGA-19-5956-01 7 79840392 79840392 T C GNAI1 Missense_Mutation p.V233A 0.25 deleterious(0.03) possibly_damaging(0.511) TCGA-19-5956-01 7 80103590 80103590 G T GNAT3 Missense_Mutation p.F189L 0.22 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 7 80300437 80300437 T G CD36 Missense_Mutation p.N321K 0.06 deleterious(0.03) possibly_damaging(0.588) TCGA-19-5956-01 7 80456801 80456801 A T SEMA3C Silent p.V89V 0.13 TCGA-19-5956-01 7 82387760 82387760 G T PCLO 3'UTR 0.35 TCGA-19-5956-01 7 82389990 82389990 G A PCLO Nonsense_Mutation p.R5085* 0.54 TCGA-19-5956-01 7 82451669 82451669 G A PCLO Intron 0.59 TCGA-19-5956-01 7 82538202 82538202 A G PCLO Silent p.H4476H 0.50 TCGA-19-5956-01 7 82545960 82545960 C T PCLO Missense_Mutation p.R3781Q 0.26 unknown(0) TCGA-19-5956-01 7 8258122 8258122 C T ICA1 Missense_Mutation p.R131Q 0.14 tolerated(0.38) possibly_damaging(0.894) TCGA-19-5956-01 7 82584393 82584393 G T PCLO Missense_Mutation p.S1959Y 0.39 unknown(0) TCGA-19-5956-01 7 8272237 8272237 G A ICA1 Silent p.L56L 0.15 TCGA-19-5956-01 7 8275577 8275577 T A ICA1 5'UTR 0.22 TCGA-19-5956-01 7 83590581 83590581 A C SEMA3A 3'UTR 0.26 TCGA-19-5956-01 7 83590974 83590974 G T SEMA3A Missense_Mutation p.L677I 0.19 tolerated(0.25) probably_damaging(0.996) TCGA-19-5956-01 7 83634703 83634703 G A SEMA3A Nonsense_Mutation p.R438* 0.22 TCGA-19-5956-01 7 84651889 84651889 C T SEMA3D Missense_Mutation p.R411Q 0.47 deleterious(0) possibly_damaging(0.558) TCGA-19-5956-01 7 8475277 8475277 G A NXPH1 5'UTR 0.29 TCGA-19-5956-01 7 86469128 86469128 C T GRM3 Silent p.N766N 0.16 TCGA-19-5956-01 7 86824489 86824489 G T DMTF1 3'UTR 0.44 TCGA-19-5956-01 7 87006690 87006690 A C CROT Missense_Mutation p.D329A 0.42 deleterious(0.01) possibly_damaging(0.595) TCGA-19-5956-01 7 87021960 87021960 G T CROT Nonsense_Mutation p.G530* 0.11 TCGA-19-5956-01 7 87537002 87537002 G A DBF4 Missense_Mutation p.D517N 0.49 tolerated(1) benign(0.093) TCGA-19-5956-01 7 87757947 87757947 G T ADAM22 Nonsense_Mutation p.E237* 0.08 TCGA-19-5956-01 7 87762209 87762209 C T ADAM22 Silent p.S340S 0.08 TCGA-19-5956-01 7 8790757 8790757 C T NXPH1 Silent p.L58L 0.08 TCGA-19-5956-01 7 881737 881737 C T SUN1 Missense_Mutation p.R141C 0.29 deleterious(0.03) benign(0.019) TCGA-19-5956-01 7 88423466 88423466 G A C7orf62 3'UTR 0.24 TCGA-19-5956-01 7 88963972 88963972 C A ZNF804B Missense_Mutation p.S559Y 0.08 deleterious(0.01) possibly_damaging(0.729) TCGA-19-5956-01 7 89749165 89749165 C T RP5-1121E10.2 Intron 0.71 TCGA-19-5956-01 7 90338740 90338740 C A CDK14 5'UTR 0.25 TCGA-19-5956-01 7 91503404 91503404 C A MTERF Missense_Mutation p.R235I 0.15 deleterious(0.04) possibly_damaging(0.493) TCGA-19-5956-01 7 91708426 91708426 C A AKAP9 Missense_Mutation p.L2327I 0.53 probably_damaging(0.991) TCGA-19-5956-01 7 91708867 91708867 C A AKAP9 Missense_Mutation p.L2474I 0.22 benign(0.045) TCGA-19-5956-01 7 91957126 91957126 T A ANKIB1 Silent p.L233L 0.52 TCGA-19-5956-01 7 91974304 91974304 A G ANKIB1 Missense_Mutation p.M337V 0.46 tolerated(0.06) benign(0.039) TCGA-19-5956-01 7 92028132 92028132 C A ANKIB1 Missense_Mutation p.L1047M 0.30 tolerated_low_confidence(0.17) benign(0.208) TCGA-19-5956-01 7 92098162 92098162 C A ERVW-1 Missense_Mutation p.V512F 0.10 deleterious_low_confidence(0) benign(0.35) TCGA-19-5956-01 7 92147135 92147135 C T PEX1 Missense_Mutation p.E232K 0.49 tolerated(0.16) benign(0.002) TCGA-19-5956-01 7 92147284 92147284 C T PEX1 Missense_Mutation p.R182H 0.18 tolerated(0.08) benign(0.081) TCGA-19-5956-01 7 92147524 92147524 G A PEX1 Nonsense_Mutation p.R135* 0.23 TCGA-19-5956-01 7 92158223 92158223 G A RBM48 Silent p.R32R 0.53 TCGA-19-5956-01 7 92164256 92164256 C T RBM48 Missense_Mutation p.A330V 0.20 tolerated(0.11) probably_damaging(0.999) TCGA-19-5956-01 7 92730618 92730618 C A SAMD9 3'UTR 0.08 TCGA-19-5956-01 7 92734394 92734394 G A SAMD9 Silent p.F339F 0.41 TCGA-19-5956-01 7 92761569 92761569 G T SAMD9L Missense_Mutation p.P1239H 0.51 deleterious(0.02) possibly_damaging(0.834) TCGA-19-5956-01 7 92762191 92762191 G A SAMD9L Nonsense_Mutation p.Q1032* 0.10 TCGA-19-5956-01 7 92883210 92883210 C T CCDC132 Missense_Mutation p.A88V 0.31 tolerated(0.18) benign(0.052) TCGA-19-5956-01 7 93628536 93628536 T C BET1 Silent p.E30E 0.10 TCGA-19-5956-01 7 94056578 94056578 C T COL1A2 Nonsense_Mutation p.R1080* 0.11 TCGA-19-5956-01 7 94059768 94059768 C A COL1A2 3'UTR 0.46 TCGA-19-5956-01 7 94539619 94539619 G T PPP1R9A Missense_Mutation p.R65I 0.38 deleterious(0) probably_damaging(1) TCGA-19-5956-01 7 94903256 94903256 C T PPP1R9A Missense_Mutation p.A1057V 0.53 tolerated(0.88) benign(0.001) TCGA-19-5956-01 7 94937380 94937380 C T PON1 Missense_Mutation p.R214Q 0.51 tolerated(0.13) benign(0.005) TCGA-19-5956-01 7 95019514 95019514 G T PON3 Silent p.G51G 0.08 TCGA-19-5956-01 7 95157578 95157578 A C ASB4 Missense_Mutation p.H314P 0.09 deleterious(0.01) benign(0.326) TCGA-19-5956-01 7 95214839 95214839 G T PDK4 3'UTR 0.18 TCGA-19-5956-01 7 95813703 95813703 G A SLC25A13 Nonsense_Mutation p.R356* 0.23 TCGA-19-5956-01 7 97493630 97493630 C A ASNS Missense_Mutation p.R143I 0.28 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 7 97498281 97498281 C T ASNS Missense_Mutation p.R63Q 0.51 tolerated(0.09) possibly_damaging(0.508) TCGA-19-5956-01 7 97616396 97616396 C T OCM2 Silent p.A89A 0.29 TCGA-19-5956-01 7 97822353 97822353 G A LMTK2 Missense_Mutation p.S859N 0.16 tolerated(0.77) benign(0.002) TCGA-19-5956-01 7 97851741 97851741 G A TECPR1 Silent p.G1007G 0.42 TCGA-19-5956-01 7 97870172 97870172 C A TECPR1 Missense_Mutation p.K308N 0.23 tolerated(0.18) benign(0.102) TCGA-19-5956-01 7 97949421 97949421 C A BAIAP2L1 Missense_Mutation p.E99D 0.13 tolerated(0.1) benign(0.074) TCGA-19-5956-01 7 98460930 98460930 C A TMEM130 Missense_Mutation p.S60I 0.31 deleterious(0) possibly_damaging(0.871) TCGA-19-5956-01 7 98519479 98519479 C T TRRAP Missense_Mutation p.S909L 0.38 benign(0.394) TCGA-19-5956-01 7 98550925 98550925 C T TRRAP Missense_Mutation p.R1860C 0.20 probably_damaging(1) TCGA-19-5956-01 7 98567782 98567782 C T TRRAP Silent p.C2513C 0.20 TCGA-19-5956-01 7 98633248 98633248 C T SMURF1 Missense_Mutation p.R660Q 0.51 tolerated(0.87) benign(0.003) TCGA-19-5956-01 7 98649911 98649911 C T SMURF1 Missense_Mutation p.R213Q 0.25 tolerated(0.27) possibly_damaging(0.86) TCGA-19-5956-01 7 99032836 99032836 G A ATP5J2-PTCD1 Silent p.F59F 0.16 TCGA-19-5956-01 7 99110089 99110089 C A ZKSCAN5 Missense_Mutation p.P143H 0.21 deleterious(0) possibly_damaging(0.633) TCGA-19-5956-01 7 99123819 99123819 C T ZKSCAN5 Missense_Mutation p.R386W 0.22 deleterious(0) probably_damaging(0.95) TCGA-19-5956-01 7 99474573 99474573 G T OR2AE1 Missense_Mutation p.F28L 0.16 tolerated(0.06) benign(0.059) TCGA-19-5956-01 7 99725551 99725551 T C MBLAC1 Missense_Mutation p.V178A 0.36 deleterious(0.04) possibly_damaging(0.612) TCGA-19-5956-01 7 99821585 99821585 C T GATS Missense_Mutation p.A111T 0.06 tolerated(0.14) benign(0.144) TCGA-19-5956-01 7 99917304 99917304 T G SPDYE3 Nonsense_Mutation p.L488* 0.21 TCGA-19-5956-01 8 100568810 100568810 C A VPS13B Silent p.V1651V 0.20 TCGA-19-5956-01 8 100779097 100779097 G A VPS13B Silent p.Q2407Q 0.45 TCGA-19-5956-01 8 100883683 100883683 C T VPS13B Missense_Mutation p.L3860F 0.10 tolerated(0.1) possibly_damaging(0.587) TCGA-19-5956-01 8 100999757 100999757 G A RGS22 Missense_Mutation p.R1037C 0.44 deleterious(0.01) probably_damaging(0.956) TCGA-19-5956-01 8 101157386 101157386 A T FBXO43 5'UTR 0.53 TCGA-19-5956-01 8 101586101 101586101 C A SNX31 Missense_Mutation p.D439Y 0.20 deleterious(0) probably_damaging(0.94) TCGA-19-5956-01 8 102381483 102381483 C T NACAP1 RNA 0.24 TCGA-19-5956-01 8 103237118 103237118 C T RRM2B Silent p.K150K 0.33 TCGA-19-5956-01 8 103287838 103287838 C A UBR5 Nonsense_Mutation p.E2214* 0.41 TCGA-19-5956-01 8 103307218 103307218 C T UBR5 Missense_Mutation p.D1394N 0.12 deleterious(0.01) probably_damaging(0.98) TCGA-19-5956-01 8 103359143 103359143 C T UBR5 Silent p.E188E 0.14 TCGA-19-5956-01 8 103663669 103663669 C A KLF10 Missense_Mutation p.Q297H 0.25 deleterious(0.01) probably_damaging(0.962) TCGA-19-5956-01 8 10390529 10390529 T C PRSS55 Missense_Mutation p.Y238H 0.14 tolerated(0.08) possibly_damaging(0.601) TCGA-19-5956-01 8 104337069 104337069 T G FZD6 Silent p.S245S 0.17 TCGA-19-5956-01 8 104337184 104337184 G A FZD6 Missense_Mutation p.V284I 0.15 tolerated(1) benign(0.02) TCGA-19-5956-01 8 104412612 104412612 G A SLC25A32 3'UTR 0.45 TCGA-19-5956-01 8 10467812 10467812 C T RP1L1 Missense_Mutation p.A1266T 0.09 benign(0.016) TCGA-19-5956-01 8 10469202 10469202 G A RP1L1 Silent p.P802P 0.24 TCGA-19-5956-01 8 10474048 10474048 G A RP1L1 Missense_Mutation p.A220V 0.51 probably_damaging(1) TCGA-19-5956-01 8 104927724 104927724 T C RIMS2 Missense_Mutation p.V605A 0.17 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 8 104955049 104955049 T C RIMS2 Missense_Mutation p.Y866H 0.45 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 8 105001643 105001643 G T RIMS2 Missense_Mutation p.R1013I 0.10 deleterious_low_confidence(0.04) probably_damaging(0.935) TCGA-19-5956-01 8 105257161 105257161 C A RIMS2 Missense_Mutation p.L1118I 0.20 tolerated_low_confidence(0.24) benign(0.011) TCGA-19-5956-01 8 105361482 105361482 T G DCSTAMP Missense_Mutation p.F234L 0.47 deleterious(0) possibly_damaging(0.698) TCGA-19-5956-01 8 105503421 105503421 G A LRP12 Missense_Mutation p.A687V 0.48 deleterious(0.01) benign(0.169) TCGA-19-5956-01 8 105509293 105509293 G T LRP12 Missense_Mutation p.A496D 0.46 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 10555156 10555156 G T C8orf74 Missense_Mutation p.D97Y 0.06 deleterious(0.01) probably_damaging(0.954) TCGA-19-5956-01 8 106813882 106813882 G A ZFPM2 Silent p.V524V 0.23 TCGA-19-5956-01 8 107718938 107718938 G A OXR1 Missense_Mutation p.D398N 0.43 tolerated(0.75) benign(0.001) TCGA-19-5956-01 8 107719191 107719191 G T OXR1 Missense_Mutation p.S482I 0.09 deleterious(0.04) benign(0) TCGA-19-5956-01 8 107773427 107773427 C T ABRA Silent p.K328K 0.50 TCGA-19-5956-01 8 109796544 109796544 G A TMEM74 Nonsense_Mutation p.R262* 0.21 TCGA-19-5956-01 8 110457091 110457091 T C PKHD1L1 Silent p.L1665L 0.05 TCGA-19-5956-01 8 110519915 110519915 T G PKHD1L1 Missense_Mutation p.V3673G 0.14 deleterious(0) possibly_damaging(0.888) TCGA-19-5956-01 8 110573096 110573096 G T EBAG9 Missense_Mutation p.Q153H 0.29 deleterious(0.05) possibly_damaging(0.835) TCGA-19-5956-01 8 110587020 110587020 A C SYBU 3'UTR 0.21 TCGA-19-5956-01 8 110587047 110587047 G T SYBU 3'UTR 0.22 TCGA-19-5956-01 8 110592308 110592308 C A SYBU Intron 0.13 TCGA-19-5956-01 8 110598369 110598369 G A SYBU Silent p.S150S 0.17 TCGA-19-5956-01 8 110984845 110984845 G T KCNV1 Silent p.I211I 0.12 TCGA-19-5956-01 8 110986345 110986345 G A KCNV1 Silent p.C91C 0.48 TCGA-19-5956-01 8 11282100 11282100 G A FAM167A Missense_Mutation p.R143C 0.46 deleterious(0.04) probably_damaging(0.99) TCGA-19-5956-01 8 113237046 113237046 G A CSMD3 Missense_Mutation p.A3693V 0.13 tolerated(0.08) benign(0.044) TCGA-19-5956-01 8 113243778 113243778 T C CSMD3 Silent p.R3608R 0.21 TCGA-19-5956-01 8 113304912 113304912 G T CSMD3 Missense_Mutation p.P2881Q 0.09 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 8 11405551 11405551 C T BLK Silent p.F62F 0.20 TCGA-19-5956-01 8 114326906 114326906 C A CSMD3 Nonsense_Mutation p.E99* 0.19 TCGA-19-5956-01 8 116430603 116430603 G A TRPS1 Silent p.G926G 0.10 TCGA-19-5956-01 8 116599543 116599543 G A TRPS1 Silent p.T795T 0.45 TCGA-19-5956-01 8 116616122 116616122 C A TRPS1 Nonsense_Mutation p.E692* 0.19 TCGA-19-5956-01 8 116631454 116631454 C A TRPS1 Missense_Mutation p.D291Y 0.12 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-19-5956-01 8 11683626 11683626 G T FDFT1 Nonsense_Mutation p.E202* 0.13 TCGA-19-5956-01 8 118174077 118174077 C A SLC30A8 Missense_Mutation p.L225I 0.14 deleterious(0.02) possibly_damaging(0.782) TCGA-19-5956-01 8 119936942 119936942 C T TNFRSF11B Missense_Mutation p.E293K 0.08 tolerated(0.11) possibly_damaging(0.474) TCGA-19-5956-01 8 120103452 120103452 G A COLEC10 Silent p.G95G 0.40 TCGA-19-5956-01 8 120795747 120795747 C T TAF2 Silent p.Q662Q 0.49 TCGA-19-5956-01 8 120801907 120801907 A G TAF2 Missense_Mutation p.V498A 0.22 deleterious(0.01) benign(0.141) TCGA-19-5956-01 8 120810002 120810002 C A TAF2 Nonsense_Mutation p.E293* 0.08 TCGA-19-5956-01 8 120816117 120816117 C T TAF2 Splice_Site p.X187_splice 0.07 TCGA-19-5956-01 8 120940678 120940678 G A DEPTOR Missense_Mutation p.R54H 0.08 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 8 120977556 120977556 C A DEPTOR Missense_Mutation p.F170L 0.08 tolerated(0.89) benign(0.009) TCGA-19-5956-01 8 121222021 121222021 C A COL14A1 Missense_Mutation p.L450I 0.12 tolerated(0.09) benign(0.034) TCGA-19-5956-01 8 121222088 121222088 A G COL14A1 Missense_Mutation p.Y472C 0.06 deleterious(0) probably_damaging(0.943) TCGA-19-5956-01 8 121587369 121587369 C T SNTB1 Missense_Mutation p.A365T 0.18 tolerated(0.05) possibly_damaging(0.507) TCGA-19-5956-01 8 122626781 122626781 G A HAS2 Silent p.F409F 0.20 TCGA-19-5956-01 8 123965469 123965469 C T ZHX2 Silent p.I573I 0.16 TCGA-19-5956-01 8 124109635 124109635 G A TBC1D31 Missense_Mutation p.R262H 0.19 deleterious(0.01) possibly_damaging(0.75) TCGA-19-5956-01 8 124358903 124358903 G T ATAD2 Missense_Mutation p.S767Y 0.14 deleterious(0.03) benign(0.163) TCGA-19-5956-01 8 124360274 124360274 C A ATAD2 Intron 0.15 TCGA-19-5956-01 8 124449567 124449567 G A WDYHV1 Silent p.E167E 0.32 TCGA-19-5956-01 8 124453607 124453607 C A WDYHV1 Silent p.V190V 0.20 TCGA-19-5956-01 8 124710758 124710758 G A ANXA13 Silent p.F117F 0.52 TCGA-19-5956-01 8 125035756 125035756 G A FER1L6 Missense_Mutation p.A736T 0.44 deleterious(0.03) benign(0.005) TCGA-19-5956-01 8 125072543 125072543 C T FER1L6 Intron 0.68 TCGA-19-5956-01 8 125073000 125073000 G T FER1L6 Intron 0.21 TCGA-19-5956-01 8 125094585 125094585 A G FER1L6 Missense_Mutation p.Y1426C 0.20 deleterious(0) probably_damaging(1) TCGA-19-5956-01 8 125498880 125498881 - T RNF139 Frame_Shift_Ins p.I333Yfs*22 0.36 TCGA-19-5956-01 8 12598424 12598424 G T LONRF1 Missense_Mutation p.L308I 0.21 deleterious(0.03) possibly_damaging(0.721) TCGA-19-5956-01 8 125989821 125989821 G T ZNF572 Missense_Mutation p.E437D 0.20 deleterious(0.03) probably_damaging(0.989) TCGA-19-5956-01 8 125989932 125989932 G T ZNF572 Missense_Mutation p.E474D 0.10 tolerated(0.12) benign(0.015) TCGA-19-5956-01 8 12878819 12878819 C T KIAA1456 Missense_Mutation p.R211W 0.11 deleterious(0) probably_damaging(0.968) TCGA-19-5956-01 8 12952306 12952306 G A DLC1 Missense_Mutation p.T1163M 0.12 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 13357605 13357605 G T DLC1 5'UTR 0.41 TCGA-19-5956-01 8 133650208 133650208 G A LRRC6 Silent p.F134F 0.31 TCGA-19-5956-01 8 133759280 133759280 C A TMEM71 Missense_Mutation p.G113V 0.21 deleterious(0.02) probably_damaging(0.935) TCGA-19-5956-01 8 133850043 133850043 C T PHF20L1 Silent p.C726C 0.14 TCGA-19-5956-01 8 133906115 133906115 C T TG Missense_Mutation p.A981V 0.51 tolerated(0.51) benign(0.055) TCGA-19-5956-01 8 134225367 134225367 C T WISP1 Silent p.Y110Y 0.19 TCGA-19-5956-01 8 135614438 135614438 C T ZFAT Silent p.Q508Q 0.09 TCGA-19-5956-01 8 139163823 139163823 G A FAM135B Silent p.D965D 0.16 TCGA-19-5956-01 8 139165045 139165045 G A FAM135B Missense_Mutation p.S558F 0.43 deleterious(0) possibly_damaging(0.553) TCGA-19-5956-01 8 14022139 14022139 G T SGCZ Missense_Mutation p.S166Y 0.20 tolerated(0.2) possibly_damaging(0.526) TCGA-19-5956-01 8 141595297 141595297 C T AGO2 Missense_Mutation p.E46K 0.09 tolerated(0.63) benign(0.002) TCGA-19-5956-01 8 142173444 142173444 T A DENND3 Missense_Mutation p.N375K 0.42 tolerated(0.19) benign(0.033) TCGA-19-5956-01 8 142185322 142185322 G T DENND3 Nonsense_Mutation p.E687* 0.25 TCGA-19-5956-01 8 142517209 142517209 G A MROH5 Missense_Mutation p.P14L 0.24 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 8 143783041 143783041 T C LY6K Missense_Mutation p.C43R 0.09 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 143927958 143927958 G A GML Missense_Mutation p.C110Y 0.13 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 143927969 143927969 G T GML Nonsense_Mutation p.G114* 0.13 TCGA-19-5956-01 8 143995711 143995711 G T CYP11B2 Missense_Mutation p.S308Y 0.17 tolerated(0.33) probably_damaging(0.956) TCGA-19-5956-01 8 143996131 143996131 G T CYP11B2 Silent p.I263I 0.32 TCGA-19-5956-01 8 144403402 144403402 C T TOP1MT Missense_Mutation p.R372H 0.54 deleterious(0.03) possibly_damaging(0.542) TCGA-19-5956-01 8 144407663 144407663 C T TOP1MT Missense_Mutation p.G175D 0.17 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 8 144618455 144618455 C T ZC3H3 Silent p.P511P 0.44 TCGA-19-5956-01 8 144732494 144732494 A G ZNF623 Missense_Mutation p.Y151C 0.26 deleterious(0.01) benign(0.008) TCGA-19-5956-01 8 144776266 144776266 C T ZNF707 Missense_Mutation p.R228C 0.30 deleterious(0.01) possibly_damaging(0.594) TCGA-19-5956-01 8 144919468 144919468 G T NRBP2 Nonsense_Mutation p.Y360* 0.11 TCGA-19-5956-01 8 144940412 144940412 C T EPPK1 Missense_Mutation p.R2337H 0.06 probably_damaging(0.919) TCGA-19-5956-01 8 144940488 144940488 C T EPPK1 Missense_Mutation p.D2312N 0.06 probably_damaging(0.989) TCGA-19-5956-01 8 144940659 144940659 G A EPPK1 Missense_Mutation p.R2255W 0.09 probably_damaging(0.979) TCGA-19-5956-01 8 144940887 144940887 G A EPPK1 Nonsense_Mutation p.R2179* 0.12 TCGA-19-5956-01 8 144941626 144941626 C T EPPK1 Silent p.E1932E 0.46 TCGA-19-5956-01 8 144945695 144945695 T G EPPK1 Missense_Mutation p.E576A 0.38 benign(0.146) TCGA-19-5956-01 8 144945986 144945986 C T EPPK1 Missense_Mutation p.G479E 0.40 benign(0.037) TCGA-19-5956-01 8 144992729 144992729 C T PLEC Missense_Mutation p.G3891R 0.45 probably_damaging(1) TCGA-19-5956-01 8 144994516 144994516 C T PLEC Missense_Mutation p.C3295Y 0.40 benign(0.124) TCGA-19-5956-01 8 144996858 144996858 G T PLEC Silent p.I2550I 0.45 TCGA-19-5956-01 8 144997204 144997204 T C PLEC Missense_Mutation p.E2435G 0.11 probably_damaging(0.995) TCGA-19-5956-01 8 145004139 145004139 C T PLEC Missense_Mutation p.D1039N 0.52 unknown(0) TCGA-19-5956-01 8 145008166 145008166 C T PLEC Silent p.S558S 0.38 TCGA-19-5956-01 8 145059131 145059131 C T PARP10 Missense_Mutation p.E347K 0.30 tolerated(0.71) benign(0.002) TCGA-19-5956-01 8 145066495 145066495 G A GRINA Missense_Mutation p.G259D 0.19 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 8 145107434 145107434 G A OPLAH Missense_Mutation p.A1074V 0.22 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 8 145113473 145113473 C T OPLAH Missense_Mutation p.A237T 0.26 deleterious(0.01) probably_damaging(0.943) TCGA-19-5956-01 8 145135423 145135423 G T EXOSC4 Missense_Mutation p.Q219H 0.09 deleterious(0.05) benign(0.031) TCGA-19-5956-01 8 145154612 145154612 G T SHARPIN Missense_Mutation p.P218H 0.09 deleterious(0.04) probably_damaging(0.993) TCGA-19-5956-01 8 145581121 145581121 G T FBXL6 Missense_Mutation p.S206Y 0.10 tolerated(0.27) benign(0.037) TCGA-19-5956-01 8 145603147 145603147 C A ADCK5 Missense_Mutation p.F28L 0.62 tolerated_low_confidence(0.53) benign(0.001) TCGA-19-5956-01 8 145638305 145638305 C T SLC39A4 Silent p.A551A 0.30 TCGA-19-5956-01 8 145659043 145659043 G A TONSL Missense_Mutation p.R1163C 0.10 deleterious(0.01) possibly_damaging(0.847) TCGA-19-5956-01 8 145724311 145724311 G T PPP1R16A Missense_Mutation p.D115Y 0.21 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 8 146032966 146032966 G A ZNF517 Missense_Mutation p.R222Q 0.70 tolerated(0.71) benign(0.408) TCGA-19-5956-01 8 146054448 146054448 G T ZNF7 5'UTR 0.32 TCGA-19-5956-01 8 146067469 146067469 G T ZNF7 Missense_Mutation p.R326I 0.11 deleterious(0.02) probably_damaging(0.991) TCGA-19-5956-01 8 146076716 146076716 G A COMMD5 Missense_Mutation p.A3V 0.18 tolerated_low_confidence(0.11) benign(0.005) TCGA-19-5956-01 8 146156035 146156035 G A ZNF16 3'UTR 0.11 TCGA-19-5956-01 8 17161976 17161976 C T MTMR7 Missense_Mutation p.D469N 0.24 tolerated(0.1) probably_damaging(0.99) TCGA-19-5956-01 8 1728795 1728795 C T CLN8 3'UTR 0.44 TCGA-19-5956-01 8 17513481 17513481 T C MTUS1 Missense_Mutation p.K1000R 0.24 tolerated(0.38) benign(0.002) TCGA-19-5956-01 8 17794849 17794849 G T PCM1 Missense_Mutation p.E101D 0.16 tolerated(0.35) benign(0.217) TCGA-19-5956-01 8 17814146 17814146 G A PCM1 Silent p.E502E 0.60 TCGA-19-5956-01 8 17822080 17822080 G A PCM1 Silent p.T886T 0.14 TCGA-19-5956-01 8 1791576 1791576 G A ARHGEF10 Missense_Mutation p.R4Q 0.57 tolerated_low_confidence(0.59) benign(0.001) TCGA-19-5956-01 8 18079956 18079956 C T NAT1 Missense_Mutation p.P196S 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 8 18725259 18725259 C T PSD3 Missense_Mutation p.G520D 0.49 tolerated(0.1) benign(0.099) TCGA-19-5956-01 8 19221637 19221637 G A SH2D4A Missense_Mutation p.R254Q 0.51 deleterious(0.01) probably_damaging(0.954) TCGA-19-5956-01 8 19813385 19813385 G A LPL Missense_Mutation p.R270H 0.22 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 19816858 19816858 C T LPL Missense_Mutation p.T369I 0.20 deleterious(0.02) benign(0.261) TCGA-19-5956-01 8 20107710 20107710 G A LZTS1 Silent p.G438G 0.45 TCGA-19-5956-01 8 2037900 2037900 G A MYOM2 Missense_Mutation p.V572M 0.42 deleterious(0.04) probably_damaging(0.997) TCGA-19-5956-01 8 21956540 21956540 C T FAM160B2 Silent p.C349C 0.20 TCGA-19-5956-01 8 21976761 21976761 T C HR Missense_Mutation p.N1005D 0.17 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 22161625 22161625 C T PIWIL2 Missense_Mutation p.R425C 0.18 deleterious(0) probably_damaging(0.961) TCGA-19-5956-01 8 22273455 22273455 C T SLC39A14 Silent p.G308G 0.10 TCGA-19-5956-01 8 22487985 22487985 C A BIN3 Missense_Mutation p.M89I 0.20 tolerated(0.4) benign(0.028) TCGA-19-5956-01 8 22548776 22548776 G A EGR3 Missense_Mutation p.S125F 0.43 tolerated(0.28) possibly_damaging(0.866) TCGA-19-5956-01 8 22880175 22880175 G T TNFRSF10B 3'UTR 0.33 TCGA-19-5956-01 8 23185992 23185992 G A LOXL2 Silent p.C351C 0.18 TCGA-19-5956-01 8 24197045 24197045 G A ADAM28 Missense_Mutation p.R545H 0.13 tolerated(0.26) benign(0.015) TCGA-19-5956-01 8 24250852 24250852 G T ADAMDEC1 Splice_Site p.X95_splice 0.23 TCGA-19-5956-01 8 24253302 24253302 G A ADAMDEC1 Missense_Mutation p.G145R 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 8 24346808 24346808 T G ADAM7 Missense_Mutation p.L410V 0.31 tolerated(1) benign(0.009) TCGA-19-5956-01 8 25216523 25216523 C T DOCK5 Silent p.D965D 0.19 TCGA-19-5956-01 8 25226229 25226229 C T DOCK5 Silent p.G1142G 0.24 TCGA-19-5956-01 8 25249447 25249447 A G DOCK5 Missense_Mutation p.Y1464C 0.56 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 8 25298174 25298174 G T KCTD9 Missense_Mutation p.S77Y 0.46 deleterious(0.03) benign(0.019) TCGA-19-5956-01 8 25364159 25364159 C A CDCA2 Missense_Mutation p.F659L 0.24 tolerated(0.59) benign(0.014) TCGA-19-5956-01 8 25902310 25902310 C A EBF2 Missense_Mutation p.E22D 0.23 tolerated_low_confidence(0.1) benign(0.012) TCGA-19-5956-01 8 26228014 26228014 C A PPP2R2A 3'UTR 0.67 TCGA-19-5956-01 8 26237153 26237153 T G BNIP3L 5'Flank 0.29 TCGA-19-5956-01 8 26435691 26435692 - A DPYSL2 5'UTR 0.19 TCGA-19-5956-01 8 26510756 26510756 G A DPYSL2 Silent p.E490E 0.47 TCGA-19-5956-01 8 26722391 26722391 G A ADRA1A Silent p.I32I 0.41 TCGA-19-5956-01 8 27098579 27098579 G A STMN4 Nonsense_Mutation p.R131* 0.11 TCGA-19-5956-01 8 27461853 27461853 G A CLU Missense_Mutation p.R297W 0.25 deleterious(0.04) benign(0.081) TCGA-19-5956-01 8 27462453 27462453 C A CLU Nonsense_Mutation p.E273* 0.24 TCGA-19-5956-01 8 27468130 27468130 G T CLU Intron 0.18 TCGA-19-5956-01 8 27634259 27634259 C A ESCO2 Missense_Mutation p.T145N 0.44 deleterious(0.01) possibly_damaging(0.878) TCGA-19-5956-01 8 27668681 27668681 G T PBK Intron 0.15 TCGA-19-5956-01 8 27967949 27967949 A C ELP3 Silent p.I152I 0.08 TCGA-19-5956-01 8 2820778 2820778 G A CSMD1 Silent p.R3140R 0.23 TCGA-19-5956-01 8 28695158 28695158 C T INTS9 Missense_Mutation p.G133S 0.51 deleterious(0.01) possibly_damaging(0.83) TCGA-19-5956-01 8 28707744 28707744 C T INTS9 Missense_Mutation p.A62T 0.18 tolerated(0.73) benign(0) TCGA-19-5956-01 8 28747377 28747377 G A INTS9 Intron 0.29 TCGA-19-5956-01 8 28837607 28837607 A C HMBOX1 Missense_Mutation p.K174Q 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 28902885 28902885 A G HMBOX1 Missense_Mutation p.N287D 0.20 tolerated(0.55) possibly_damaging(0.543) TCGA-19-5956-01 8 28908735 28908735 C T HMBOX1 3'UTR 0.36 TCGA-19-5956-01 8 28989888 28989888 C A KIF13B Missense_Mutation p.R960L 0.17 tolerated(0.28) possibly_damaging(0.586) TCGA-19-5956-01 8 29006215 29006215 G A KIF13B Silent p.N564N 0.20 TCGA-19-5956-01 8 29018364 29018364 C A KIF13B Missense_Mutation p.E430D 0.13 deleterious(0) benign(0.139) TCGA-19-5956-01 8 29963511 29963512 - T LEPROTL1 Intron 0.40 TCGA-19-5956-01 8 30699520 30699520 C T TEX15 Silent p.K2338K 0.08 TCGA-19-5956-01 8 30701259 30701259 A C TEX15 Missense_Mutation p.L1759V 0.48 deleterious(0) possibly_damaging(0.846) TCGA-19-5956-01 8 30701742 30701742 C T TEX15 Missense_Mutation p.V1598M 0.24 tolerated(1) benign(0.006) TCGA-19-5956-01 8 30703858 30703858 G A TEX15 Silent p.S892S 0.19 TCGA-19-5956-01 8 30703886 30703886 G T TEX15 Missense_Mutation p.S883Y 0.26 deleterious(0.01) probably_damaging(0.917) TCGA-19-5956-01 8 30706445 30706445 G T TEX15 Missense_Mutation p.S30Y 0.11 deleterious(0.03) benign(0.179) TCGA-19-5956-01 8 3224664 3224664 G A CSMD1 Missense_Mutation p.S1002L 0.17 probably_damaging(0.999) TCGA-19-5956-01 8 3245017 3245017 G T CSMD1 Missense_Mutation p.D927E 0.42 possibly_damaging(0.803) TCGA-19-5956-01 8 32620860 32620860 C A NRG1 Intron 0.19 TCGA-19-5956-01 8 3265631 3265631 G A CSMD1 Nonsense_Mutation p.R621* 0.47 TCGA-19-5956-01 8 33246998 33246998 C T FUT10 Missense_Mutation p.R232H 0.27 tolerated(0.08) benign(0.077) TCGA-19-5956-01 8 33346099 33346099 T C MAK16 Missense_Mutation p.S43P 0.07 deleterious(0) probably_damaging(0.949) TCGA-19-5956-01 8 33454886 33454886 G A DUSP26 Missense_Mutation p.R50W 0.09 deleterious(0) probably_damaging(0.956) TCGA-19-5956-01 8 35647892 35647892 C T UNC5D Silent p.F891F 0.21 TCGA-19-5956-01 8 35648067 35648067 C T UNC5D Nonsense_Mutation p.Q950* 0.44 TCGA-19-5956-01 8 36666291 36666291 G A KCNU1 Missense_Mutation p.A238T 0.24 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 8 36675229 36675229 C A KCNU1 Missense_Mutation p.L353I 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 8 37603037 37603037 C T ERLIN2 Intron 0.35 TCGA-19-5956-01 8 37692742 37692742 C T GPR124 Silent p.Y553Y 0.09 TCGA-19-5956-01 8 37735187 37735187 C A RAB11FIP1 Intron 0.33 TCGA-19-5956-01 8 38006227 38006227 C T STAR Missense_Mutation p.R37Q 0.56 tolerated(0.24) benign(0.004) TCGA-19-5956-01 8 38065040 38065040 C T BAG4 Missense_Mutation p.S130F 0.21 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 8 38146131 38146131 C T WHSC1L1 Silent p.P1125P 0.45 TCGA-19-5956-01 8 38176417 38176417 C A WHSC1L1 Missense_Mutation p.Q617H 0.19 deleterious(0) probably_damaging(0.95) TCGA-19-5956-01 8 38186968 38186968 A C WHSC1L1 Missense_Mutation p.I503M 0.42 tolerated(0.1) possibly_damaging(0.805) TCGA-19-5956-01 8 38282161 38282161 C T FGFR1 Missense_Mutation p.A299T 0.19 tolerated(0.09) benign(0.006) TCGA-19-5956-01 8 38385960 38385960 T G C8orf86 Missense_Mutation p.T66P 0.10 deleterious_low_confidence(0.02) possibly_damaging(0.702) TCGA-19-5956-01 8 38700870 38700870 C T TACC1 Nonsense_Mutation p.R729* 0.16 TCGA-19-5956-01 8 38814901 38814901 A G PLEKHA2 Silent p.V278V 0.61 TCGA-19-5956-01 8 38853922 38853922 G T TM2D2 Missense_Mutation p.L13M 0.21 tolerated_low_confidence(0.14) possibly_damaging(0.723) TCGA-19-5956-01 8 38874840 38874840 G A ADAM9 Silent p.E171E 0.14 TCGA-19-5956-01 8 39068707 39068707 G T ADAM32 Missense_Mutation p.S366I 0.24 deleterious(0) benign(0.215) TCGA-19-5956-01 8 39613418 39613418 G A ADAM2 Silent p.C542C 0.49 TCGA-19-5956-01 8 39792714 39792714 G T IDO2 5'UTR 0.18 TCGA-19-5956-01 8 39845448 39845448 G A IDO2 Missense_Mutation p.V183M 0.30 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 8 40532287 40532287 C A ZMAT4 Missense_Mutation p.K171N 0.48 deleterious(0) possibly_damaging(0.848) TCGA-19-5956-01 8 413031 413031 G T FBXO25 Nonsense_Mutation p.E290* 0.08 TCGA-19-5956-01 8 41355058 41355058 C T GOLGA7 Nonsense_Mutation p.R48* 0.19 TCGA-19-5956-01 8 41476492 41476492 C T AGPAT6 Silent p.L420L 0.11 TCGA-19-5956-01 8 41519400 41519400 G A ANK1 Silent p.H1887H 0.44 TCGA-19-5956-01 8 41577292 41577292 C A ANK1 Missense_Mutation p.D365Y 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 8 41789961 41789961 C T KAT6A Missense_Mutation p.R1926Q 0.46 unknown(0) TCGA-19-5956-01 8 41795049 41795049 C T KAT6A Missense_Mutation p.R1026H 0.18 probably_damaging(0.968) TCGA-19-5956-01 8 41836262 41836262 T G KAT6A Missense_Mutation p.K314T 0.17 possibly_damaging(0.87) TCGA-19-5956-01 8 41906577 41906577 C T KAT6A 5'UTR 0.42 TCGA-19-5956-01 8 42026622 42026622 T G AP3M2 3'UTR 0.30 TCGA-19-5956-01 8 42178335 42178335 G A IKBKB Missense_Mutation p.R554Q 0.47 deleterious(0) possibly_damaging(0.447) TCGA-19-5956-01 8 42323335 42323335 G A SLC20A2 Silent p.I130I 0.18 TCGA-19-5956-01 8 42401651 42401651 T C SMIM19 Silent p.G12G 0.24 TCGA-19-5956-01 8 42403897 42403897 G T SMIM19 Missense_Mutation p.R78I 0.58 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 8 42612120 42612120 G A CHRNA6 Missense_Mutation p.R109C 0.52 deleterious(0.01) probably_damaging(0.98) TCGA-19-5956-01 8 43002153 43002153 G T HGSNAT Nonsense_Mutation p.E61* 0.17 TCGA-19-5956-01 8 442529 442529 G A TDRP Missense_Mutation p.S143L 0.55 deleterious(0) benign(0.395) TCGA-19-5956-01 8 48625425 48625425 C T SPIDR Missense_Mutation p.R727C 0.42 deleterious(0.04) possibly_damaging(0.804) TCGA-19-5956-01 8 48694751 48694751 A G PRKDC Missense_Mutation p.S3820P 0.08 benign(0.012) TCGA-19-5956-01 8 48740782 48740782 G A PRKDC Missense_Mutation p.R2841C 0.39 benign(0.001) TCGA-19-5956-01 8 48761735 48761735 G A PRKDC Silent p.F2419F 0.09 TCGA-19-5956-01 8 48809762 48809762 T C PRKDC Missense_Mutation p.K1186R 0.10 possibly_damaging(0.729) TCGA-19-5956-01 8 48809791 48809791 A G PRKDC Silent p.C1176C 0.09 TCGA-19-5956-01 8 48830872 48830872 A G PRKDC Silent p.L831L 0.31 TCGA-19-5956-01 8 48846577 48846577 T C PRKDC Missense_Mutation p.Y524C 0.13 benign(0.047) TCGA-19-5956-01 8 49833946 49833946 G A SNAI2 5'UTR 0.18 TCGA-19-5956-01 8 51314775 51314775 G T SNTG1 Missense_Mutation p.K11N 0.21 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 8 51351139 51351139 G T SNTG1 Nonsense_Mutation p.G67* 0.09 TCGA-19-5956-01 8 51664652 51664652 C A SNTG1 Missense_Mutation p.T459N 0.13 deleterious(0.02) benign(0.008) TCGA-19-5956-01 8 52287263 52287263 G T PXDNL Missense_Mutation p.L1196I 0.46 deleterious(0.04) possibly_damaging(0.745) TCGA-19-5956-01 8 52322000 52322000 G A PXDNL Silent p.R728R 0.48 TCGA-19-5956-01 8 52746196 52746196 G A PCMTD1 Missense_Mutation p.S155F 0.42 deleterious(0) possibly_damaging(0.482) TCGA-19-5956-01 8 53455006 53455006 C A FAM150A Splice_Site p.X64_splice 0.19 TCGA-19-5956-01 8 53569790 53569790 G T RB1CC1 Missense_Mutation p.L867I 0.18 deleterious_low_confidence(0) possibly_damaging(0.58) TCGA-19-5956-01 8 53598001 53598001 G T RB1CC1 Missense_Mutation p.T10N 0.25 tolerated(0.41) probably_damaging(0.996) TCGA-19-5956-01 8 54906267 54906267 G A TCEA1 Missense_Mutation p.A94V 0.40 tolerated(0.43) benign(0.003) TCGA-19-5956-01 8 55055240 55055240 G A MRPL15 Silent p.T149T 0.47 TCGA-19-5956-01 8 55534028 55534028 C T RP1 Missense_Mutation p.R168C 0.41 tolerated(0.15) benign(0.014) TCGA-19-5956-01 8 55538442 55538442 C T RP1 Missense_Mutation p.S667F 0.08 deleterious(0) possibly_damaging(0.729) TCGA-19-5956-01 8 55538936 55538936 G T RP1 Missense_Mutation p.D832Y 0.10 tolerated(0.18) benign(0.003) TCGA-19-5956-01 8 55542953 55542953 T C RP1 3'UTR 0.35 TCGA-19-5956-01 8 56270406 56270406 C T XKR4 Silent p.I325I 0.14 TCGA-19-5956-01 8 56436393 56436393 C T XKR4 Silent p.F520F 0.47 TCGA-19-5956-01 8 56668895 56668895 G T TMEM68 Missense_Mutation p.P134H 0.25 deleterious(0) probably_damaging(1) TCGA-19-5956-01 8 56686240 56686240 T G TGS1 Missense_Mutation p.D21E 0.08 tolerated(0.52) benign(0.005) TCGA-19-5956-01 8 56699312 56699312 A T TGS1 Missense_Mutation p.E285D 0.08 tolerated(0.18) probably_damaging(0.996) TCGA-19-5956-01 8 57228865 57228865 G T SDR16C5 Missense_Mutation p.F14L 0.24 tolerated(0.25) benign(0.011) TCGA-19-5956-01 8 57876246 57876246 C T IMPAD1 3'UTR 0.55 TCGA-19-5956-01 8 57876282 57876282 C A IMPAD1 3'UTR 0.27 TCGA-19-5956-01 8 59404062 59404062 T G CYP7A1 Missense_Mutation p.E496A 0.20 tolerated(0.7) benign(0.005) TCGA-19-5956-01 8 59409477 59409477 C A CYP7A1 Missense_Mutation p.Q198H 0.20 tolerated(0.33) benign(0.072) TCGA-19-5956-01 8 59412695 59412695 C T CYP7A1 5'UTR 0.19 TCGA-19-5956-01 8 59720827 59720827 C A TOX Missense_Mutation p.G465V 0.22 deleterious(0) possibly_damaging(0.823) TCGA-19-5956-01 8 59852085 59852085 G T TOX Missense_Mutation p.L63M 0.18 tolerated(0.19) probably_damaging(0.979) TCGA-19-5956-01 8 61654962 61654962 A G CHD7 Missense_Mutation p.N324S 0.11 benign(0.292) TCGA-19-5956-01 8 61765995 61765995 C T CHD7 Silent p.S2237S 0.51 TCGA-19-5956-01 8 62416065 62416065 G T ASPH Silent p.T710T 0.30 TCGA-19-5956-01 8 6390001 6390001 T G ANGPT2 Missense_Mutation p.N99T 0.10 tolerated(0.08) benign(0.144) TCGA-19-5956-01 8 64099225 64099225 G A YTHDF3 Missense_Mutation p.S218N 0.37 tolerated(0.14) possibly_damaging(0.759) TCGA-19-5956-01 8 65527671 65527671 G A CYP7B1 Silent p.D323D 0.49 TCGA-19-5956-01 8 66635720 66635720 C A PDE7A Intron 0.30 TCGA-19-5956-01 8 66659892 66659892 C T PDE7A Missense_Mutation p.A144T 0.20 tolerated(0.11) benign(0.44) TCGA-19-5956-01 8 66691966 66691966 C T PDE7A Missense_Mutation p.R91H 0.20 deleterious(0.02) possibly_damaging(0.575) TCGA-19-5956-01 8 67066565 67066565 C A TRIM55 Missense_Mutation p.S507Y 0.11 deleterious_low_confidence(0) probably_damaging(0.962) TCGA-19-5956-01 8 67417752 67417752 C A C8orf46 Missense_Mutation p.S90Y 0.44 deleterious(0.01) benign(0.195) TCGA-19-5956-01 8 67577482 67577482 T G VCPIP1 Missense_Mutation p.K571T 0.11 tolerated(0.12) benign(0.093) TCGA-19-5956-01 8 67976719 67976719 C T CSPP1 Missense_Mutation p.A29V 0.11 tolerated_low_confidence(0.13) benign(0.075) TCGA-19-5956-01 8 68007676 68007676 G A CSPP1 Missense_Mutation p.R220Q 0.50 tolerated(0.24) benign(0.343) TCGA-19-5956-01 8 68123726 68123726 G A ARFGEF1 Missense_Mutation p.S1604F 0.22 deleterious(0.03) benign(0.089) TCGA-19-5956-01 8 68165728 68165728 C A ARFGEF1 Nonsense_Mutation p.E886* 0.18 TCGA-19-5956-01 8 68184025 68184025 G T ARFGEF1 Nonsense_Mutation p.S495* 0.11 TCGA-19-5956-01 8 68204215 68204215 G A ARFGEF1 Silent p.H261H 0.48 TCGA-19-5956-01 8 69012038 69012038 G T PREX2 Missense_Mutation p.R892I 0.24 deleterious(0) benign(0.091) TCGA-19-5956-01 8 69104575 69104575 G A PREX2 Missense_Mutation p.M1473I 0.19 tolerated(1) benign(0.014) TCGA-19-5956-01 8 70512896 70512896 G A SULF1 Missense_Mutation p.G265R 0.49 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 8 70585088 70585088 C A SLCO5A1 3'UTR 0.25 TCGA-19-5956-01 8 70667780 70667780 C A SLCO5A1 Missense_Mutation p.K379N 0.14 tolerated(0.09) benign(0.038) TCGA-19-5956-01 8 71037070 71037070 G A NCOA2 Missense_Mutation p.T1316I 0.25 tolerated(0.28) possibly_damaging(0.836) TCGA-19-5956-01 8 72156924 72156924 G A EYA1 Missense_Mutation p.P352S 0.19 tolerated(0.12) benign(0.426) TCGA-19-5956-01 8 72182031 72182031 T C EYA1 Missense_Mutation p.T332A 0.12 deleterious(0.02) possibly_damaging(0.734) TCGA-19-5956-01 8 72968039 72968039 G A TRPA1 Missense_Mutation p.P416S 0.42 deleterious(0) probably_damaging(1) TCGA-19-5956-01 8 73480482 73480482 C A KCNB2 Nonsense_Mutation p.C171* 0.11 TCGA-19-5956-01 8 73849873 73849873 C A KCNB2 Silent p.P761P 0.06 TCGA-19-5956-01 8 74231399 74231399 C A RDH10 Silent p.S198S 0.19 TCGA-19-5956-01 8 74529534 74529534 G T STAU2 Missense_Mutation p.S188Y 0.13 tolerated(0.27) benign(0.352) TCGA-19-5956-01 8 74529683 74529683 A C STAU2 Nonsense_Mutation p.Y138* 0.14 TCGA-19-5956-01 8 75757638 75757638 C T PI15 Missense_Mutation p.R183W 0.57 deleterious(0) probably_damaging(0.914) TCGA-19-5956-01 8 75926224 75926224 C T CRISPLD1 Silent p.V171V 0.29 TCGA-19-5956-01 8 75926273 75926273 A G CRISPLD1 Missense_Mutation p.N188D 0.08 tolerated(0.2) possibly_damaging(0.867) TCGA-19-5956-01 8 77768303 77768303 A G ZFHX4 Missense_Mutation p.Y3049C 0.33 benign(0.421) TCGA-19-5956-01 8 77775616 77775616 C A ZFHX4 Silent p.I3222I 0.10 TCGA-19-5956-01 8 77895521 77895521 C A PEX2 Missense_Mutation p.E298D 0.19 deleterious_low_confidence(0.02) benign(0.242) TCGA-19-5956-01 8 77896392 77896392 G A PEX2 Missense_Mutation p.A8V 0.10 tolerated(0.27) benign(0.002) TCGA-19-5956-01 8 79510697 79510697 C T PKIA Silent p.I26I 0.49 TCGA-19-5956-01 8 80992751 80992751 G A TPD52 5'UTR 0.55 TCGA-19-5956-01 8 81582839 81582839 C T ZNF704 Splice_Site p.X187_splice 0.21 TCGA-19-5956-01 8 8175649 8175649 C T SGK223 3'UTR 0.33 TCGA-19-5956-01 8 8185841 8185841 C A SGK223 Missense_Mutation p.K817N 0.10 probably_damaging(0.991) TCGA-19-5956-01 8 81888983 81888983 G A PAG1 Silent p.F365F 0.53 TCGA-19-5956-01 8 8233907 8233907 C T SGK223 Missense_Mutation p.R671H 0.24 benign(0.002) TCGA-19-5956-01 8 8235017 8235017 T A SGK223 Missense_Mutation p.E301V 0.19 benign(0.002) TCGA-19-5956-01 8 82355586 82355586 T C PMP2 3'UTR 0.08 TCGA-19-5956-01 8 82752028 82752028 G A SNX16 Missense_Mutation p.S65L 0.47 deleterious(0.02) benign(0.341) TCGA-19-5956-01 8 8560082 8560082 C T CLDN23 Silent p.S58S 0.46 TCGA-19-5956-01 8 8560408 8560408 G A CLDN23 Missense_Mutation p.S167N 0.18 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 8 86039050 86039050 C A LRRCC1 Missense_Mutation p.L467M 0.20 tolerated(0.91) benign(0.016) TCGA-19-5956-01 8 86240861 86240861 G A CA1 Silent p.N238N 0.16 TCGA-19-5956-01 8 86357388 86357388 G T CA3 Nonsense_Mutation p.G150* 0.22 TCGA-19-5956-01 8 87162514 87162514 C T ATP6V0D2 Silent p.Y271Y 0.49 TCGA-19-5956-01 8 87486452 87486452 A C RMDN1 3'UTR 0.50 TCGA-19-5956-01 8 8749857 8749857 C T MFHAS1 Missense_Mutation p.E238K 0.36 tolerated(1) benign(0.023) TCGA-19-5956-01 8 89209518 89209518 G A MMP16 Silent p.Y50Y 0.32 TCGA-19-5956-01 8 89339322 89339322 C A MMP16 Missense_Mutation p.E38D 0.07 tolerated(0.36) benign(0.002) TCGA-19-5956-01 8 90777571 90777571 A C RIPK2 Missense_Mutation p.K110N 0.20 deleterious(0.04) possibly_damaging(0.768) TCGA-19-5956-01 8 90782107 90782107 C A RIPK2 Missense_Mutation p.N197K 0.53 tolerated(0.74) benign(0.088) TCGA-19-5956-01 8 90782114 90782114 C T RIPK2 Missense_Mutation p.P200S 0.18 deleterious(0.02) possibly_damaging(0.791) TCGA-19-5956-01 8 90796275 90796275 C T RIPK2 Intron 0.15 TCGA-19-5956-01 8 91029411 91029411 C A DECR1 Missense_Mutation p.F43L 0.14 deleterious(0.04) benign(0.026) TCGA-19-5956-01 8 91064161 91064161 G T DECR1 3'UTR 0.63 TCGA-19-5956-01 8 91657456 91657456 C T TMEM64 Silent p.Q226Q 0.22 TCGA-19-5956-01 8 92030705 92030705 A C TMEM55A Missense_Mutation p.I133M 0.19 tolerated(0.09) possibly_damaging(0.507) TCGA-19-5956-01 8 94745658 94745658 C T RBM12B Missense_Mutation p.R994Q 0.57 deleterious(0) probably_damaging(0.979) TCGA-19-5956-01 8 94746079 94746079 C T RBM12B Missense_Mutation p.A854T 0.09 tolerated(0.1) benign(0.11) TCGA-19-5956-01 8 94828721 94828721 C T TMEM67 3'UTR 0.29 TCGA-19-5956-01 8 94935083 94935083 C T PDP1 Nonsense_Mutation p.R291* 0.21 TCGA-19-5956-01 8 95140468 95140468 T C CDH17 Nonstop_Mutation p.*833Wext*2 0.12 TCGA-19-5956-01 8 95140475 95140475 C A CDH17 Missense_Mutation p.R831I 0.20 deleterious_low_confidence(0) benign(0.319) TCGA-19-5956-01 8 95412692 95412692 C A RAD54B Splice_Site p.X315_splice 0.28 TCGA-19-5956-01 8 95505023 95505023 G T KIAA1429 Silent p.L1555L 0.26 TCGA-19-5956-01 8 9564474 9564474 G A TNKS Missense_Mutation p.A475T 0.08 deleterious(0.02) probably_damaging(0.993) TCGA-19-5956-01 8 95751671 95751671 C A DPY19L4 Missense_Mutation p.T125N 0.32 deleterious(0) probably_damaging(1) TCGA-19-5956-01 8 95837226 95837226 G A INTS8 Missense_Mutation p.R79H 0.44 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 8 95869179 95869179 C T INTS8 Nonsense_Mutation p.R643* 0.50 TCGA-19-5956-01 8 95894421 95894421 T G CCNE2 Missense_Mutation p.K347T 0.15 tolerated(0.22) benign(0.36) TCGA-19-5956-01 8 96060700 96060700 G T NDUFAF6 Nonsense_Mutation p.E244* 0.10 TCGA-19-5956-01 8 96166960 96166960 T G PLEKHF2 Missense_Mutation p.S230A 0.45 tolerated(0.77) benign(0.001) TCGA-19-5956-01 8 98900448 98900448 C T MATN2 Silent p.T40T 0.44 TCGA-19-5956-01 8 99054049 99054049 C A RPL30 Nonsense_Mutation p.E110* 0.14 TCGA-19-5956-01 8 99146737 99146737 G T POP1 Missense_Mutation p.K287N 0.19 deleterious(0.01) possibly_damaging(0.811) TCGA-19-5956-01 8 99168387 99168387 G A POP1 Missense_Mutation p.E723K 0.41 tolerated(0.32) benign(0.016) TCGA-19-5956-01 9 100074401 100074401 G T CCDC180 Missense_Mutation p.K133N 0.55 deleterious(0.02) possibly_damaging(0.896) TCGA-19-5956-01 9 100079351 100079352 TG - CCDC180 Frame_Shift_Del p.M311Kfs*54 0.37 TCGA-19-5956-01 9 100092809 100092809 G A CCDC180 Silent p.L722L 0.43 TCGA-19-5956-01 9 100245253 100245253 G T TDRD7 Missense_Mutation p.Q845H 0.47 deleterious(0.04) probably_damaging(0.997) TCGA-19-5956-01 9 100675762 100675762 C A C9orf156 Missense_Mutation p.K110N 0.44 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 9 100698469 100698469 A G HEMGN Missense_Mutation p.S53P 0.11 deleterious(0.01) possibly_damaging(0.82) TCGA-19-5956-01 9 100839267 100839267 A C NANS Missense_Mutation p.N139T 0.16 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 9 100890891 100890891 G A CORO2A Missense_Mutation p.R360W 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 9 101216421 101216421 C T GABBR2 Missense_Mutation p.D360N 0.26 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 101552551 101552551 C T ANKS6 Missense_Mutation p.A233T 0.16 tolerated(0.22) possibly_damaging(0.642) TCGA-19-5956-01 9 101822190 101822190 C T COL15A1 Silent p.P1119P 0.14 TCGA-19-5956-01 9 101980356 101980356 C A ALG2 Nonsense_Mutation p.E371* 0.09 TCGA-19-5956-01 9 103204198 103204198 G A MSANTD3 5'UTR 0.46 TCGA-19-5956-01 9 103348379 103348379 G A MURC Silent p.R247R 0.14 TCGA-19-5956-01 9 104187808 104187808 C A ALDOB Missense_Mutation p.K242N 0.19 tolerated(0.15) benign(0.044) TCGA-19-5956-01 9 104238363 104238363 G T TMEM246 Missense_Mutation p.L338I 0.47 deleterious(0.01) benign(0.29) TCGA-19-5956-01 9 104449062 104449062 G A GRIN3A Missense_Mutation p.L374F 0.36 deleterious(0) probably_damaging(0.921) TCGA-19-5956-01 9 1055730 1055730 G T DMRT2 Intron 0.21 TCGA-19-5956-01 9 106861933 106861933 T C SMC2 Silent p.I150I 0.31 TCGA-19-5956-01 9 107267028 107267028 C A OR13F1 Missense_Mutation p.S162Y 0.42 deleterious(0.01) benign(0.009) TCGA-19-5956-01 9 107367586 107367586 C A OR13C2 Missense_Mutation p.G108V 0.42 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 107379697 107379697 C T OR13C9 Silent p.K263K 0.17 TCGA-19-5956-01 9 107593264 107593264 C T ABCA1 Missense_Mutation p.E612K 0.08 tolerated(0.4) benign(0.008) TCGA-19-5956-01 9 108127763 108127763 G T SLC44A1 Splice_Site p.X418_splice 0.24 TCGA-19-5956-01 9 108397381 108397381 A C FKTN Missense_Mutation p.K408Q 0.19 deleterious(0.01) benign(0.247) TCGA-19-5956-01 9 109688760 109688760 G A ZNF462 Missense_Mutation p.R856Q 0.20 probably_damaging(0.99) TCGA-19-5956-01 9 109689043 109689043 G A ZNF462 Silent p.T950T 0.41 TCGA-19-5956-01 9 109689361 109689361 A C ZNF462 Missense_Mutation p.E1056D 0.12 possibly_damaging(0.633) TCGA-19-5956-01 9 109691712 109691712 A T ZNF462 Missense_Mutation p.E1840V 0.15 possibly_damaging(0.773) TCGA-19-5956-01 9 110064336 110064336 A G RAD23B Missense_Mutation p.T57A 0.09 tolerated(0.12) unknown(0) TCGA-19-5956-01 9 111617940 111617940 C T ACTL7B Missense_Mutation p.D91N 0.49 tolerated(0.5) probably_damaging(0.999) TCGA-19-5956-01 9 111618143 111618143 C T ACTL7B Missense_Mutation p.R23Q 0.52 tolerated(0.29) benign(0) TCGA-19-5956-01 9 111704964 111704964 T A CTNNAL1 3'UTR 0.24 TCGA-19-5956-01 9 111808575 111808575 C A TMEM245 Intron 0.51 TCGA-19-5956-01 9 111868810 111868810 T C TMEM245 Silent p.K259K 0.14 TCGA-19-5956-01 9 112025352 112025352 T G EPB41L4B Missense_Mutation p.E203D 0.33 tolerated(0.07) possibly_damaging(0.695) TCGA-19-5956-01 9 112185130 112185130 G A PTPN3 Missense_Mutation p.S335L 0.23 tolerated(0.07) benign(0.002) TCGA-19-5956-01 9 112216786 112216786 C A PTPN3 Nonsense_Mutation p.E120* 0.09 TCGA-19-5956-01 9 113169739 113169739 G A SVEP1 Missense_Mutation p.S2714L 0.42 probably_damaging(0.928) TCGA-19-5956-01 9 113169880 113169880 G T SVEP1 Missense_Mutation p.S2667Y 0.45 possibly_damaging(0.701) TCGA-19-5956-01 9 113234451 113234451 A C SVEP1 Missense_Mutation p.F918V 0.20 probably_damaging(0.999) TCGA-19-5956-01 9 113563175 113563175 G A MUSK Nonsense_Mutation p.W839* 0.21 TCGA-19-5956-01 9 113637728 113637728 A G LPAR1 Silent p.V356V 0.13 TCGA-19-5956-01 9 113637895 113637895 C T LPAR1 Missense_Mutation p.E301K 0.13 tolerated(0.09) probably_damaging(0.992) TCGA-19-5956-01 9 114089822 114089822 C A OR2K2 Missense_Mutation p.D298Y 0.11 deleterious(0.01) benign(0.396) TCGA-19-5956-01 9 114178622 114178622 C T KIAA0368 Missense_Mutation p.R743Q 0.45 deleterious(0.01) benign(0.345) TCGA-19-5956-01 9 114304229 114304229 C A ZNF483 Silent p.P338P 0.05 TCGA-19-5956-01 9 114332453 114332453 C T PTGR1 Missense_Mutation p.R266H 0.10 tolerated(0.18) benign(0.003) TCGA-19-5956-01 9 114454723 114454723 C T C9orf84 Silent p.S1114S 0.34 TCGA-19-5956-01 9 114677005 114677005 C A UGCG Missense_Mutation p.F73L 0.42 deleterious(0.01) possibly_damaging(0.566) TCGA-19-5956-01 9 114695219 114695219 G T UGCG Missense_Mutation p.R376I 0.20 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 9 114911653 114911653 T C SUSD1 Missense_Mutation p.T82A 0.07 tolerated(0.15) benign(0.046) TCGA-19-5956-01 9 115567073 115567073 C T SNX30 Silent p.N58N 0.47 TCGA-19-5956-01 9 115651988 115651988 G T SLC46A2 Missense_Mutation p.A325D 0.59 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 115760384 115760384 C A ZNF883 RNA 0.38 TCGA-19-5956-01 9 116021085 116021085 C A SLC31A1 Missense_Mutation p.S105Y 0.20 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 9 116038032 116038032 C A PRPF4 Silent p.S3S 0.40 TCGA-19-5956-01 9 116060307 116060307 C T RNF183 Missense_Mutation p.R53H 0.14 tolerated(0.12) possibly_damaging(0.614) TCGA-19-5956-01 9 116079105 116079105 C A WDR31 Missense_Mutation p.S343I 0.37 deleterious(0) probably_damaging(0.974) TCGA-19-5956-01 9 116150535 116150535 G A ALAD 3'UTR 0.51 TCGA-19-5956-01 9 117071652 117071652 C A COL27A1 Missense_Mutation p.T1777N 0.12 unknown(0) TCGA-19-5956-01 9 117266477 117266477 G A DFNB31 Missense_Mutation p.A202V 0.08 tolerated(0.12) possibly_damaging(0.545) TCGA-19-5956-01 9 117266870 117266870 A G DFNB31 Missense_Mutation p.V71A 0.12 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 9 117405649 117405649 G T C9orf91 3'UTR 0.16 TCGA-19-5956-01 9 117791715 117791715 G A TNC Silent p.N2031N 0.11 TCGA-19-5956-01 9 117797608 117797608 C T TNC Missense_Mutation p.D1888N 0.45 deleterious(0.02) probably_damaging(1) TCGA-19-5956-01 9 117848183 117848183 G A TNC Silent p.C609C 0.22 TCGA-19-5956-01 9 117849014 117849014 G A TNC Silent p.C332C 0.32 TCGA-19-5956-01 9 118989785 118989785 A G PAPPA Silent p.P729P 0.25 TCGA-19-5956-01 9 121930193 121930193 G A BRINP1 Silent p.D485D 0.46 TCGA-19-5956-01 9 121930364 121930364 G A BRINP1 Silent p.C428C 0.43 TCGA-19-5956-01 9 121976092 121976092 G A BRINP1 Intron 0.10 TCGA-19-5956-01 9 123007260 123007260 C A MIR147A RNA 0.35 TCGA-19-5956-01 9 123156857 123156857 C A CDK5RAP2 Missense_Mutation p.K1837N 0.18 deleterious(0.01) probably_damaging(0.95) TCGA-19-5956-01 9 123201748 123201748 C A CDK5RAP2 Missense_Mutation p.Q1217H 0.10 deleterious(0.02) probably_damaging(0.976) TCGA-19-5956-01 9 123201897 123201897 C A CDK5RAP2 Nonsense_Mutation p.E1168* 0.10 TCGA-19-5956-01 9 123367560 123367560 C A MEGF9 Missense_Mutation p.D573Y 0.25 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 9 123384975 123384975 C A MEGF9 Missense_Mutation p.D288Y 0.14 deleterious(0.01) probably_damaging(0.99) TCGA-19-5956-01 9 123671536 123671536 G A TRAF1 Missense_Mutation p.A335V 0.12 deleterious(0.01) possibly_damaging(0.493) TCGA-19-5956-01 9 123675825 123675825 G A TRAF1 Silent p.V162V 0.08 TCGA-19-5956-01 9 123715043 123715043 C T C5 Missense_Mutation p.E1669K 0.09 tolerated(0.24) benign(0.285) TCGA-19-5956-01 9 123744172 123744172 C A C5 Missense_Mutation p.A1146S 0.17 tolerated(0.28) possibly_damaging(0.504) TCGA-19-5956-01 9 123932001 123932001 G T CNTRL Missense_Mutation p.Q2061H 0.25 probably_damaging(0.957) TCGA-19-5956-01 9 124976562 124976562 C T LHX6 Silent p.Q261Q 0.14 TCGA-19-5956-01 9 125288841 125288841 G A OR1N1 Silent p.C244C 0.38 TCGA-19-5956-01 9 125289270 125289270 G T OR1N1 Missense_Mutation p.F101L 0.20 deleterious(0.02) benign(0.007) TCGA-19-5956-01 9 125424532 125424532 G A OR1L1 Missense_Mutation p.D180N 0.19 deleterious(0.01) probably_damaging(0.947) TCGA-19-5956-01 9 125424685 125424685 G A OR1L1 Missense_Mutation p.A231T 0.47 tolerated(0.52) benign(0.1) TCGA-19-5956-01 9 125613464 125613464 C A RC3H2 Missense_Mutation p.Q1092H 0.27 tolerated_low_confidence(0.24) possibly_damaging(0.68) TCGA-19-5956-01 9 125652514 125652514 G A RC3H2 Intron 0.56 TCGA-19-5956-01 9 12694375 12694375 C A TYRP1 Missense_Mutation p.L127I 0.10 tolerated(0.22) benign(0.003) TCGA-19-5956-01 9 12698618 12698618 C A TYRP1 Silent p.S292S 0.12 TCGA-19-5956-01 9 127088628 127088628 G A NEK6 Missense_Mutation p.R176Q 0.29 tolerated(0.29) benign(0.197) TCGA-19-5956-01 9 127110011 127110011 C T NEK6 Silent p.F281F 0.46 TCGA-19-5956-01 9 127174688 127174688 G T PSMB7 Missense_Mutation p.T113N 0.09 deleterious(0) probably_damaging(0.956) TCGA-19-5956-01 9 127262913 127262913 T G NR5A1 Missense_Mutation p.K109T 0.55 deleterious(0) probably_damaging(0.928) TCGA-19-5956-01 9 127316709 127316709 G A NR6A1 Nonsense_Mutation p.R95* 0.48 TCGA-19-5956-01 9 127662731 127662731 G A GOLGA1 Silent p.L387L 0.51 TCGA-19-5956-01 9 128064870 128064870 T G GAPVD1 Missense_Mutation p.F265C 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 9 129594867 129594867 C T ZBTB43 Missense_Mutation p.R27C 0.25 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 9 129595520 129595520 C T ZBTB43 Silent p.I244I 0.12 TCGA-19-5956-01 9 130094597 130094597 G A GARNL3 Silent p.G213G 0.04 TCGA-19-5956-01 9 130149500 130149500 C T GARNL3 Missense_Mutation p.A806V 0.14 tolerated(0.15) benign(0.002) TCGA-19-5956-01 9 130206929 130206929 G A ZNF79 Missense_Mutation p.S317N 0.19 tolerated(0.52) benign(0) TCGA-19-5956-01 9 130493634 130493634 C A TTC16 Missense_Mutation p.L858I 0.23 tolerated(0.52) benign(0.023) TCGA-19-5956-01 9 130504100 130504100 G A SH2D3C Silent p.F685F 0.31 TCGA-19-5956-01 9 130541015 130541015 G A SH2D3C 5'UTR 0.45 TCGA-19-5956-01 9 130549820 130549820 G A CDK9 Silent p.E66E 0.45 TCGA-19-5956-01 9 130863450 130863450 C A SLC25A25 Missense_Mutation p.H113N 0.21 tolerated(0.08) benign(0.274) TCGA-19-5956-01 9 130914210 130914210 C T LCN2 Silent p.L127L 0.12 TCGA-19-5956-01 9 130941274 130941274 C A CIZ1 Missense_Mutation p.Q404H 0.17 deleterious_low_confidence(0) benign(0.216) TCGA-19-5956-01 9 131021301 131021301 C T GOLGA2 Missense_Mutation p.A693T 0.19 tolerated(0.11) possibly_damaging(0.713) TCGA-19-5956-01 9 131286076 131286076 G T GLE1 Missense_Mutation p.G283V 0.23 deleterious(0.02) probably_damaging(0.995) TCGA-19-5956-01 9 131467645 131467645 G T PKN3 Nonsense_Mutation p.E30* 0.44 TCGA-19-5956-01 9 131784673 131784673 C A SH3GLB2 Missense_Mutation p.E31D 0.08 deleterious(0.03) probably_damaging(0.999) TCGA-19-5956-01 9 131857768 131857768 C T CRAT Missense_Mutation p.E597K 0.48 deleterious(0.02) benign(0.153) TCGA-19-5956-01 9 132636936 132636936 G A USP20 Missense_Mutation p.E608K 0.26 deleterious(0.04) probably_damaging(0.975) TCGA-19-5956-01 9 132637665 132637665 C T USP20 Missense_Mutation p.R709W 0.18 deleterious(0) benign(0.339) TCGA-19-5956-01 9 133333922 133333922 G T ASS1 Silent p.V103V 0.44 TCGA-19-5956-01 9 134346274 134346274 G A PRRC2B Missense_Mutation p.D671N 0.20 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 9 134366803 134366803 G A PRRC2B Intron 0.45 TCGA-19-5956-01 9 134501740 134501740 G A RAPGEF1 Missense_Mutation p.T425M 0.38 tolerated_low_confidence(0.06) benign(0.005) TCGA-19-5956-01 9 134501774 134501774 C A RAPGEF1 Missense_Mutation p.D414Y 0.10 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 135458281 135458281 C T BARHL1 Missense_Mutation p.R33C 0.11 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-19-5956-01 9 135545663 135545663 C T DDX31 5'UTR 0.17 TCGA-19-5956-01 9 135779084 135779084 C T TSC1 Missense_Mutation p.R721H 0.24 deleterious(0) possibly_damaging(0.816) TCGA-19-5956-01 9 135919290 135919290 C A GTF3C5 Missense_Mutation p.F183L 0.09 tolerated(0.29) benign(0.041) TCGA-19-5956-01 9 135976950 135976950 A G RALGDS Missense_Mutation p.V804A 0.20 deleterious(0) unknown(0) TCGA-19-5956-01 9 136217480 136217480 G A RPL7A Missense_Mutation p.R175H 0.48 tolerated(0.16) benign(0.01) TCGA-19-5956-01 9 136221717 136221717 G T SURF1 Missense_Mutation p.L68I 0.11 tolerated(0.09) benign(0.042) TCGA-19-5956-01 9 136259426 136259426 C T C9orf96 Missense_Mutation p.R198C 0.24 deleterious(0.02) benign(0.001) TCGA-19-5956-01 9 136273922 136273922 C A REXO4 Missense_Mutation p.Q348H 0.17 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 9 136310833 136310833 C T ADAMTS13 Missense_Mutation p.S875F 0.08 deleterious(0.01) possibly_damaging(0.702) TCGA-19-5956-01 9 136379882 136379882 C A TMEM8C Missense_Mutation p.S181I 0.45 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 9 136522304 136522304 G A DBH Missense_Mutation p.A559T 0.21 deleterious(0.04) possibly_damaging(0.613) TCGA-19-5956-01 9 136582461 136582461 C T SARDH Silent p.T379T 0.50 TCGA-19-5956-01 9 136656983 136656983 C T VAV2 Silent p.A370A 0.47 TCGA-19-5956-01 9 137650104 137650104 G A COL5A1 Missense_Mutation p.D633N 0.24 probably_damaging(0.993) TCGA-19-5956-01 9 137694797 137694797 G A COL5A1 Missense_Mutation p.G1024S 0.21 unknown(0) TCGA-19-5956-01 9 137710730 137710730 G A COL5A1 Missense_Mutation p.G1459S 0.47 unknown(0) TCGA-19-5956-01 9 137779203 137779203 C T FCN2 Missense_Mutation p.S295L 0.18 deleterious(0.01) benign(0.211) TCGA-19-5956-01 9 137998650 137998650 G A OLFM1 Silent p.S226S 0.26 TCGA-19-5956-01 9 138378642 138378642 C T PPP1R26 Silent p.G762G 0.25 TCGA-19-5956-01 9 138387154 138387154 T G C9orf116 3'UTR 0.12 TCGA-19-5956-01 9 138516425 138516425 C T GLT6D1 Missense_Mutation p.A117T 0.13 tolerated(0.16) benign(0.007) TCGA-19-5956-01 9 138675887 138675887 C T KCNT1 Silent p.G953G 0.46 TCGA-19-5956-01 9 138706958 138706958 C A CAMSAP1 Missense_Mutation p.K1497N 0.42 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 9 139100726 139100726 C T QSOX2 Missense_Mutation p.A649T 0.42 tolerated(0.07) benign(0.058) TCGA-19-5956-01 9 139345812 139345812 G A SEC16A Missense_Mutation p.R2070C 0.12 tolerated(0.15) benign(0.006) TCGA-19-5956-01 9 139353672 139353672 C T SEC16A Missense_Mutation p.A1775T 0.20 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 9 139740965 139740965 G A C9orf172 Missense_Mutation p.R700H 0.19 deleterious(0) possibly_damaging(0.857) TCGA-19-5956-01 9 139904470 139904470 G A ABCA2 Missense_Mutation p.R2154W 0.62 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 9 139907173 139907173 C T ABCA2 Missense_Mutation p.R1691Q 0.47 tolerated(0.07) possibly_damaging(0.806) TCGA-19-5956-01 9 139914806 139914806 G A ABCA2 Silent p.V469V 0.08 TCGA-19-5956-01 9 139983433 139983433 G T MAN1B1 Missense_Mutation p.E147D 0.23 tolerated(0.36) benign(0.003) TCGA-19-5956-01 9 140001829 140001829 C A MAN1B1 Missense_Mutation p.T565K 0.17 deleterious(0.03) probably_damaging(1) TCGA-19-5956-01 9 140055763 140055763 T C GRIN1 Silent p.C475C 0.16 TCGA-19-5956-01 9 140076225 140076225 G A ANAPC2 Missense_Mutation p.T459I 0.55 deleterious(0.01) benign(0.281) TCGA-19-5956-01 9 140083657 140083657 G T SSNA1 Missense_Mutation p.K64N 0.12 deleterious(0.04) probably_damaging(0.978) TCGA-19-5956-01 9 140243961 140243961 G A EXD3 Missense_Mutation p.A506V 0.55 tolerated(0.19) benign(0.341) TCGA-19-5956-01 9 140391650 140391650 G T PNPLA7 Missense_Mutation p.L668I 0.17 tolerated(0.07) probably_damaging(0.999) TCGA-19-5956-01 9 140449727 140449727 G A DPH7 Silent p.D441D 0.24 TCGA-19-5956-01 9 140469244 140469244 G T DPH7 Missense_Mutation p.L143M 0.36 deleterious(0.02) possibly_damaging(0.573) TCGA-19-5956-01 9 140638532 140638532 G A EHMT1 Missense_Mutation p.R387H 0.51 tolerated_low_confidence(0.46) benign(0.001) TCGA-19-5956-01 9 140685306 140685306 G A EHMT1 Missense_Mutation p.A797T 0.43 deleterious(0.02) probably_damaging(0.987) TCGA-19-5956-01 9 140807667 140807667 G A CACNA1B Missense_Mutation p.R189Q 0.14 deleterious(0) benign(0.16) TCGA-19-5956-01 9 140941468 140941468 G T CACNA1B Missense_Mutation p.D1176Y 0.36 deleterious(0) possibly_damaging(0.885) TCGA-19-5956-01 9 14737503 14737503 C T FREM1 Missense_Mutation p.R2144H 0.56 tolerated(0.67) benign(0.001) TCGA-19-5956-01 9 14750173 14750173 G T FREM1 Missense_Mutation p.L1837I 0.51 tolerated(0.11) benign(0.339) TCGA-19-5956-01 9 14792827 14792827 G T FREM1 Missense_Mutation p.L1299I 0.36 deleterious(0.03) possibly_damaging(0.831) TCGA-19-5956-01 9 14806802 14806802 G T FREM1 Missense_Mutation p.T1044N 0.47 tolerated(0.06) benign(0.111) TCGA-19-5956-01 9 154737 154737 C A CBWD1 Missense_Mutation p.D212Y 0.10 deleterious(0.02) benign(0.141) TCGA-19-5956-01 9 15777805 15777805 G A CCDC171 Missense_Mutation p.R960H 0.28 tolerated(0.54) benign(0.001) TCGA-19-5956-01 9 16436910 16436910 G A BNC2 Missense_Mutation p.R428W 0.47 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 9 17235699 17235699 G A CNTLN Missense_Mutation p.R193Q 0.41 tolerated(0.18) benign(0.016) TCGA-19-5956-01 9 17394682 17394682 G T CNTLN Nonsense_Mutation p.E744* 0.14 TCGA-19-5956-01 9 18706989 18706989 G A ADAMTSL1 Missense_Mutation p.E607K 0.81 tolerated(0.54) benign(0.017) TCGA-19-5956-01 9 19116507 19116507 G A PLIN2 Silent p.G351G 0.34 TCGA-19-5956-01 9 19577009 19577009 C T SLC24A2 Missense_Mutation p.E381K 0.24 tolerated(0.06) benign(0.119) TCGA-19-5956-01 9 2039894 2039894 C T SMARCA2 Missense_Mutation p.P262S 0.17 possibly_damaging(0.641) TCGA-19-5956-01 9 2056768 2056768 A C SMARCA2 Silent p.R424R 0.16 TCGA-19-5956-01 9 2101587 2101587 C T SMARCA2 Silent p.H1032H 0.17 TCGA-19-5956-01 9 2110296 2110296 T G SMARCA2 Missense_Mutation p.F1112C 0.18 probably_damaging(0.926) TCGA-19-5956-01 9 2110385 2110385 G T SMARCA2 Missense_Mutation p.V1142F 0.35 possibly_damaging(0.727) TCGA-19-5956-01 9 2115922 2115922 C T SMARCA2 Missense_Mutation p.A1186V 0.47 possibly_damaging(0.499) TCGA-19-5956-01 9 214446 214446 T G C9orf66 3'UTR 0.64 TCGA-19-5956-01 9 215367 215367 C T C9orf66 Silent p.R10R 0.10 TCGA-19-5956-01 9 2639868 2639868 C T VLDLR Missense_Mutation p.T71M 0.43 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 2645062 2645062 C A VLDLR Missense_Mutation p.T431N 0.15 deleterious(0.03) probably_damaging(0.994) TCGA-19-5956-01 9 2718496 2718496 C T KCNV2 Missense_Mutation p.P253S 0.46 deleterious(0) probably_damaging(0.983) TCGA-19-5956-01 9 2718730 2718730 G A KCNV2 Missense_Mutation p.A331T 0.49 tolerated(0.41) benign(0.06) TCGA-19-5956-01 9 27202978 27202978 G T TEK Missense_Mutation p.K690N 0.40 tolerated(0.16) benign(0.081) TCGA-19-5956-01 9 27206697 27206697 G T TEK Missense_Mutation p.D828Y 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 27359143 27359143 G A MOB3B Silent p.F170F 0.41 TCGA-19-5956-01 9 27950409 27950409 G A LINGO2 Silent p.D87D 0.90 TCGA-19-5956-01 9 2812220 2812220 C A KIAA0020 Missense_Mutation p.S471I 0.23 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 9 312115 312115 G A DOCK8 Silent p.R230R 0.08 TCGA-19-5956-01 9 32492501 32492501 C A DDX58 Missense_Mutation p.E153D 0.19 tolerated(0.11) possibly_damaging(0.871) TCGA-19-5956-01 9 32553933 32553933 T G NDUFB6 Missense_Mutation p.I110L 0.23 tolerated(0.06) probably_damaging(0.999) TCGA-19-5956-01 9 32631725 32631725 C T TAF1L Missense_Mutation p.A1285T 0.45 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 9 32632553 32632553 C A TAF1L Nonsense_Mutation p.G1009* 0.46 TCGA-19-5956-01 9 33120476 33120476 C T B4GALT1 Silent p.A259A 0.21 TCGA-19-5956-01 9 33294587 33294587 C T NFX1 Silent p.I65I 0.05 TCGA-19-5956-01 9 33385699 33385699 G T AQP7 Missense_Mutation p.L231M 0.20 deleterious(0.01) probably_damaging(0.976) TCGA-19-5956-01 9 33442133 33442133 G T AQP3 Missense_Mutation p.L263M 0.11 deleterious(0.03) possibly_damaging(0.792) TCGA-19-5956-01 9 33442761 33442761 C T AQP3 Intron 0.12 TCGA-19-5956-01 9 33467194 33467194 G A NOL6 Missense_Mutation p.R598W 0.47 deleterious(0.02) probably_damaging(0.97) TCGA-19-5956-01 9 33469229 33469229 G A NOL6 Nonsense_Mutation p.R280* 0.44 TCGA-19-5956-01 9 33469270 33469270 C T NOL6 Missense_Mutation p.R266H 0.09 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 9 33472241 33472241 G T NOL6 Missense_Mutation p.T75N 0.41 deleterious(0) benign(0.373) TCGA-19-5956-01 9 34096754 34096754 C T DCAF12 Missense_Mutation p.G274D 0.14 deleterious(0) possibly_damaging(0.844) TCGA-19-5956-01 9 34613826 34613826 G A DCTN3 Missense_Mutation p.L172F 0.49 deleterious(0) probably_damaging(0.983) TCGA-19-5956-01 9 34650372 34650372 G T GALT Nonsense_Mutation p.E356* 0.12 TCGA-19-5956-01 9 34996687 34996687 A G DNAJB5 Missense_Mutation p.I327V 0.37 tolerated(0.2) benign(0.016) TCGA-19-5956-01 9 35045425 35045425 G T C9orf131 Missense_Mutation p.K933N 0.08 deleterious(0.01) benign(0.288) TCGA-19-5956-01 9 35105191 35105191 G A FAM214B 3'UTR 0.30 TCGA-19-5956-01 9 35375176 35375176 C A UNC13B Missense_Mutation p.T449N 0.11 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 9 35377571 35377571 C A UNC13B Silent p.I565I 0.09 TCGA-19-5956-01 9 35649950 35649950 C T SIT1 Silent p.S162S 0.47 TCGA-19-5956-01 9 35650000 35650000 C T SIT1 Missense_Mutation p.V146I 0.29 tolerated(1) benign(0) TCGA-19-5956-01 9 35664798 35664798 C T ARHGEF39 Missense_Mutation p.R63H 0.49 tolerated(0.18) benign(0.017) TCGA-19-5956-01 9 35685108 35685108 G A TPM2 Nonsense_Mutation p.R198* 0.41 TCGA-19-5956-01 9 35689944 35689944 C T TPM2 5'UTR 0.17 TCGA-19-5956-01 9 35712090 35712090 C T TLN1 Missense_Mutation p.R1198H 0.17 tolerated(0.17) probably_damaging(0.984) TCGA-19-5956-01 9 35714568 35714568 T C TLN1 Intron 0.11 TCGA-19-5956-01 9 35715146 35715146 C T TLN1 Silent p.Q888Q 0.11 TCGA-19-5956-01 9 35722872 35722872 G A TLN1 Missense_Mutation p.R277C 0.22 tolerated(0.06) benign(0.004) TCGA-19-5956-01 9 35748550 35748550 C A GBA2 Missense_Mutation p.S51I 0.07 tolerated_low_confidence(0.14) benign(0.001) TCGA-19-5956-01 9 35792674 35792674 A G NPR2 Missense_Mutation p.Y90C 0.08 tolerated(0.08) possibly_damaging(0.852) TCGA-19-5956-01 9 35792827 35792827 G A NPR2 Missense_Mutation p.R141H 0.53 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 9 35811934 35811934 C A SPAG8 Missense_Mutation p.D37Y 0.29 deleterious_low_confidence(0) unknown(0) TCGA-19-5956-01 9 36087939 36087939 G A RECK Missense_Mutation p.A296T 0.11 deleterious(0) probably_damaging(0.941) TCGA-19-5956-01 9 36117012 36117012 G A RECK Silent p.T697T 0.35 TCGA-19-5956-01 9 36169968 36169968 C T CCIN Missense_Mutation p.R157W 0.32 deleterious(0) probably_damaging(0.94) TCGA-19-5956-01 9 36923382 36923382 G A PAX5 Missense_Mutation p.P294S 0.60 tolerated(1) benign(0.023) TCGA-19-5956-01 9 371495 371495 C T DOCK8 Silent p.L646L 0.06 TCGA-19-5956-01 9 37357318 37357318 C A ZCCHC7 3'UTR 0.25 TCGA-19-5956-01 9 37516068 37516068 C T FBXO10 Silent p.R843R 0.26 TCGA-19-5956-01 9 376289 376289 C A DOCK8 Missense_Mutation p.S730Y 0.65 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 9 37745642 37745642 G A FRMPD1 Missense_Mutation p.D1205N 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.649) TCGA-19-5956-01 9 37746398 37746398 G A FRMPD1 Missense_Mutation p.E1457K 0.19 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 9 37746719 37746719 G A FRMPD1 Missense_Mutation p.A1564T 0.43 deleterious(0) possibly_damaging(0.83) TCGA-19-5956-01 9 38396493 38396493 G A ALDH1B1 Missense_Mutation p.A250T 0.20 tolerated(0.13) benign(0.018) TCGA-19-5956-01 9 39171504 39171504 G A CNTNAP3 Nonsense_Mutation p.R399* 0.19 TCGA-19-5956-01 9 40772906 40772906 C A ZNF658 Missense_Mutation p.R790I 0.12 deleterious(0) probably_damaging(0.985) TCGA-19-5956-01 9 40774525 40774525 T G ZNF658 Missense_Mutation p.K250N 0.11 tolerated(0.05) benign(0.261) TCGA-19-5956-01 9 40775002 40775002 C T ZNF658 Silent p.R91R 0.22 TCGA-19-5956-01 9 4286094 4286094 G T GLIS3 Missense_Mutation p.T111N 0.09 tolerated(0.34) benign(0.001) TCGA-19-5956-01 9 43627383 43627383 T C SPATA31A6 Missense_Mutation p.D435G 0.10 tolerated(0.22) benign(0.003) TCGA-19-5956-01 9 43627618 43627618 C A SPATA31A6 Nonsense_Mutation p.E357* 0.20 TCGA-19-5956-01 9 4544692 4544692 T G SLC1A1 Missense_Mutation p.S73A 0.11 tolerated(0.05) possibly_damaging(0.647) TCGA-19-5956-01 9 4585396 4585396 G A SLC1A1 Silent p.E471E 0.27 TCGA-19-5956-01 9 4625327 4625327 G A SPATA6L Silent p.H165H 0.41 TCGA-19-5956-01 9 4666274 4666274 C T SPATA6L Intron 0.25 TCGA-19-5956-01 9 4849551 4849551 G A RCL1 Splice_Site p.X324_splice 0.52 TCGA-19-5956-01 9 4860322 4860322 C T RCL1 3'UTR 0.35 TCGA-19-5956-01 9 5054652 5054652 G T JAK2 Missense_Mutation p.R235I 0.08 deleterious(0.02) benign(0.144) TCGA-19-5956-01 9 5069069 5069069 G A JAK2 Silent p.E458E 0.16 TCGA-19-5956-01 9 5304460 5304460 G A RLN2 Missense_Mutation p.R41C 0.10 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 9 5361819 5361819 G A PLGRKT Missense_Mutation p.R51W 0.38 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 5563174 5563174 G T PDCD1LG2 Missense_Mutation p.R260I 0.19 deleterious(0) benign(0.11) TCGA-19-5956-01 9 5743014 5743014 G A KIAA1432 Splice_Site p.X349_splice 0.61 TCGA-19-5956-01 9 5765702 5765702 G A KIAA1432 Missense_Mutation p.R1014Q 0.44 deleterious(0) possibly_damaging(0.642) TCGA-19-5956-01 9 5929134 5929134 G T KIAA2026 Missense_Mutation p.A803D 0.44 deleterious(0) possibly_damaging(0.55) TCGA-19-5956-01 9 5968161 5968161 C A KIAA2026 Missense_Mutation p.K690N 0.62 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 9 5968359 5968359 T G KIAA2026 Missense_Mutation p.R624S 0.11 tolerated(0.08) benign(0.085) TCGA-19-5956-01 9 5968833 5968833 C T KIAA2026 Silent p.L466L 0.16 TCGA-19-5956-01 9 5969242 5969242 C T KIAA2026 Missense_Mutation p.R330H 0.55 deleterious(0.01) probably_damaging(0.999) TCGA-19-5956-01 9 6013039 6013039 A G RANBP6 Silent p.L857L 0.51 TCGA-19-5956-01 9 6013269 6013269 G T RANBP6 Missense_Mutation p.S780Y 0.09 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 9 6015551 6015551 A G RANBP6 Silent p.F19F 0.30 TCGA-19-5956-01 9 6254512 6254512 G T IL33 Missense_Mutation p.D191Y 0.50 deleterious(0) probably_damaging(0.989) TCGA-19-5956-01 9 6256238 6256238 G T IL33 3'UTR 0.35 TCGA-19-5956-01 9 6328475 6328475 G A TPD52L3 5'UTR 0.24 TCGA-19-5956-01 9 65508174 65508174 C T SPATA31A7 Missense_Mutation p.R70Q 0.79 tolerated(0.4) benign(0.001) TCGA-19-5956-01 9 676948 676948 G A KANK1 5'UTR 0.69 TCGA-19-5956-01 9 7011726 7011726 G T KDM4C Missense_Mutation p.E605D 0.16 tolerated(0.06) benign(0.006) TCGA-19-5956-01 9 71155539 71155539 G T TMEM252 Silent p.R64R 0.08 TCGA-19-5956-01 9 71395453 71395453 G T FAM122A Missense_Mutation p.D125Y 0.08 deleterious(0) probably_damaging(0.994) TCGA-19-5956-01 9 71845048 71845048 G A TJP2 Missense_Mutation p.R555Q 0.53 deleterious(0.03) probably_damaging(0.996) TCGA-19-5956-01 9 72046160 72046160 C A APBA1 3'UTR 0.08 TCGA-19-5956-01 9 72071238 72071238 G A APBA1 Silent p.N571N 0.45 TCGA-19-5956-01 9 72131932 72131932 G A APBA1 Silent p.G65G 0.32 TCGA-19-5956-01 9 72741230 72741230 G A MAMDC2 Missense_Mutation p.D267N 0.15 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 738479 738479 G T KANK1 Missense_Mutation p.E1176D 0.14 tolerated(0.26) benign(0.012) TCGA-19-5956-01 9 740846 740846 C T KANK1 Missense_Mutation p.A1203V 0.23 deleterious(0) probably_damaging(0.981) TCGA-19-5956-01 9 74315670 74315670 G A TMEM2 Nonsense_Mutation p.Q1089* 0.24 TCGA-19-5956-01 9 74360369 74360369 G A TMEM2 Missense_Mutation p.A200V 0.21 tolerated(0.34) benign(0.117) TCGA-19-5956-01 9 74477468 74477468 G A ABHD17B 3'UTR 0.13 TCGA-19-5956-01 9 74561986 74561986 T C C9orf85 Missense_Mutation p.V56A 0.48 deleterious(0) probably_damaging(0.971) TCGA-19-5956-01 9 74817625 74817625 C T GDA Silent p.I117I 0.21 TCGA-19-5956-01 9 74840654 74840654 A C GDA Missense_Mutation p.K259T 0.45 tolerated(0.09) possibly_damaging(0.497) TCGA-19-5956-01 9 74975050 74975050 G A ZFAND5 Missense_Mutation p.A80V 0.16 tolerated(0.56) benign(0.003) TCGA-19-5956-01 9 75315433 75315433 G T TMC1 Splice_Site p.X79_splice 0.07 TCGA-19-5956-01 9 75775212 75775212 G T ANXA1 Missense_Mutation p.G102C 0.13 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 9 77300501 77300501 C A RORB Silent p.L449L 0.20 TCGA-19-5956-01 9 77353428 77353428 C A TRPM6 Missense_Mutation p.G1891C 0.38 deleterious(0) probably_damaging(1) TCGA-19-5956-01 9 77354868 77354868 T G TRPM6 Missense_Mutation p.K1753T 0.22 deleterious(0.05) benign(0.173) TCGA-19-5956-01 9 77370335 77370335 C A TRPM6 Nonsense_Mutation p.E1614* 0.17 TCGA-19-5956-01 9 77377658 77377658 G A TRPM6 Missense_Mutation p.A1310V 0.12 tolerated_low_confidence(0.08) benign(0.008) TCGA-19-5956-01 9 77397668 77397668 C A TRPM6 Missense_Mutation p.W1007C 0.41 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 9 78848403 78848403 G A PCSK5 Silent p.S919S 0.42 TCGA-19-5956-01 9 78925708 78925708 G T PCSK5 Missense_Mutation p.Q1248H 0.30 tolerated(0.58) benign(0.002) TCGA-19-5956-01 9 78947478 78947478 C T PCSK5 Missense_Mutation p.P1540L 0.25 tolerated(0.17) benign(0.015) TCGA-19-5956-01 9 78968967 78968967 G A PCSK5 Missense_Mutation p.E1669K 0.25 tolerated(0.44) benign(0.008) TCGA-19-5956-01 9 78973693 78973693 G A PCSK5 Missense_Mutation p.R1813Q 0.48 tolerated(0.27) benign(0.037) TCGA-19-5956-01 9 79229424 79229424 G T PRUNE2 3'UTR 0.16 TCGA-19-5956-01 9 79267557 79267557 C T PRUNE2 Missense_Mutation p.R2800K 0.17 deleterious(0) benign(0.4) TCGA-19-5956-01 9 79320107 79320107 G A PRUNE2 Silent p.I2361I 0.44 TCGA-19-5956-01 9 79323858 79323858 C A PRUNE2 Missense_Mutation p.S1111I 0.20 deleterious(0.04) benign(0.219) TCGA-19-5956-01 9 79634735 79634735 G T FOXB2 Missense_Mutation p.Q55H 0.48 deleterious(0) unknown(0) TCGA-19-5956-01 9 79828156 79828156 C T VPS13A Nonsense_Mutation p.R208* 0.19 TCGA-19-5956-01 9 79891079 79891079 C T VPS13A Silent p.Y922Y 0.52 TCGA-19-5956-01 9 79908261 79908261 T - VPS13A Frame_Shift_Del p.Y1116Ifs*27 0.09 TCGA-19-5956-01 9 79930290 79930290 G T VPS13A Nonsense_Mutation p.E1512* 0.22 TCGA-19-5956-01 9 79933292 79933292 C A VPS13A Missense_Mutation p.L1700I 0.25 deleterious(0) possibly_damaging(0.905) TCGA-19-5956-01 9 79936506 79936506 C T VPS13A Missense_Mutation p.P1892S 0.48 tolerated(0.13) benign(0.434) TCGA-19-5956-01 9 79959119 79959119 C T VPS13A Silent p.V2359V 0.06 TCGA-19-5956-01 9 80412494 80412494 G A GNAQ Nonsense_Mutation p.R183* 0.48 TCGA-19-5956-01 9 82335097 82335097 C T TLE4 Missense_Mutation p.S576L 0.20 deleterious(0) probably_damaging(0.961) TCGA-19-5956-01 9 8317814 8317814 G A PTPRD 3'UTR 0.18 TCGA-19-5956-01 9 8341206 8341206 T A PTPRD Missense_Mutation p.K1670N 0.51 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 9 84530494 84530494 T C SPATA31D5P RNA 0.09 TCGA-19-5956-01 9 84562829 84562829 G T RP11-383M4.6 Intron 0.27 TCGA-19-5956-01 9 84608164 84608164 G T SPATA31D1 Nonsense_Mutation p.E927* 0.14 TCGA-19-5956-01 9 84608382 84608382 G A SPATA31D1 Silent p.G999G 0.18 TCGA-19-5956-01 9 8484257 8484257 G A PTPRD Missense_Mutation p.A1092V 0.50 tolerated(0.09) probably_damaging(0.989) TCGA-19-5956-01 9 8528596 8528596 C T PTPRD Missense_Mutation p.R179Q 0.47 deleterious(0.02) probably_damaging(0.991) TCGA-19-5956-01 9 86518369 86518369 C T KIF27 Missense_Mutation p.R355H 0.24 tolerated(0.14) benign(0.308) TCGA-19-5956-01 9 86571370 86571370 C T C9orf64 Missense_Mutation p.E16K 0.32 tolerated(0.39) benign(0.016) TCGA-19-5956-01 9 86616109 86616109 C A RMI1 Missense_Mutation p.P70T 0.19 deleterious(0) probably_damaging(0.99) TCGA-19-5956-01 9 86955496 86955496 C T SLC28A3 Missense_Mutation p.G18D 0.06 deleterious(0.03) benign(0.004) TCGA-19-5956-01 9 87486706 87486706 C T NTRK2 Intron 0.39 TCGA-19-5956-01 9 88203387 88203387 C T AGTPBP1 Missense_Mutation p.R870H 0.40 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 9 88651272 88651272 C T GOLM1 Missense_Mutation p.V250I 0.09 tolerated(0.19) benign(0.001) TCGA-19-5956-01 9 88961340 88961340 T G ZCCHC6 Missense_Mutation p.E192D 0.14 tolerated(0.13) benign(0.049) TCGA-19-5956-01 9 90252897 90252897 G T DAPK1 Missense_Mutation p.K108N 0.12 deleterious(0) possibly_damaging(0.7) TCGA-19-5956-01 9 90258377 90258377 T C DAPK1 Silent p.D335D 0.27 TCGA-19-5956-01 9 90318132 90318132 G T DAPK1 Missense_Mutation p.E1020D 0.13 deleterious(0) possibly_damaging(0.85) TCGA-19-5956-01 9 90343562 90343562 G A CTSL Silent p.R153R 0.17 TCGA-19-5956-01 9 90388512 90388512 G A CTSL3P RNA 0.21 TCGA-19-5956-01 9 90401679 90401679 A G CTSL3P RNA 0.24 TCGA-19-5956-01 9 916782 916782 G A DMRT1 Missense_Mutation p.R281H 0.14 tolerated(0.17) benign(0.233) TCGA-19-5956-01 9 91949596 91949596 C T SECISBP2 Missense_Mutation p.S347L 0.21 tolerated(0.09) benign(0.019) TCGA-19-5956-01 9 94484888 94484888 T A ROR2 3'UTR 0.47 TCGA-19-5956-01 9 94518366 94518366 T G ROR2 Missense_Mutation p.N161H 0.12 tolerated(0.29) benign(0.243) TCGA-19-5956-01 9 95004440 95004441 - T IARS Frame_Shift_Ins p.T1058Nfs*7 0.36 TCGA-19-5956-01 9 95063897 95063897 G A NOL8 Silent p.D1037D 0.39 TCGA-19-5956-01 9 95081541 95081541 T C NOL8 Missense_Mutation p.M127V 0.46 tolerated(0.22) benign(0.029) TCGA-19-5956-01 9 95277292 95277292 C A ECM2 Missense_Mutation p.E225D 0.21 tolerated(0.2) benign(0.007) TCGA-19-5956-01 9 95284950 95284950 G T ECM2 Missense_Mutation p.L67I 0.23 tolerated_low_confidence(0.87) benign(0.002) TCGA-19-5956-01 9 95396677 95396677 C T IPPK Silent p.A387A 0.27 TCGA-19-5956-01 9 95411760 95411760 C T IPPK Missense_Mutation p.R130Q 0.15 tolerated(0.13) benign(0.313) TCGA-19-5956-01 9 95480851 95480851 C T BICD2 Silent p.T692T 0.53 TCGA-19-5956-01 9 95482755 95482755 C T BICD2 Missense_Mutation p.E297K 0.39 tolerated(0.77) possibly_damaging(0.73) TCGA-19-5956-01 9 95599468 95599468 G A ANKRD19P RNA 0.28 TCGA-19-5956-01 9 95599880 95599880 C A ANKRD19P RNA 0.38 TCGA-19-5956-01 9 95610617 95610617 C T ZNF484 Missense_Mutation p.S153N 0.51 tolerated(0.23) benign(0.001) TCGA-19-5956-01 9 95840174 95840174 C A SUSD3 Silent p.A108A 0.29 TCGA-19-5956-01 9 95869974 95869974 G A C9orf89 Missense_Mutation p.R9H 0.38 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 9 96024095 96024095 G T WNK2 Splice_Site p.X1023_splice 0.09 TCGA-19-5956-01 9 96031012 96031012 G A WNK2 Silent p.P1339P 0.62 TCGA-19-5956-01 9 96415638 96415638 C T PHF2 Silent p.H260H 0.07 TCGA-19-5956-01 9 96435999 96435999 C T PHF2 Silent p.A827A 0.59 TCGA-19-5956-01 9 96859637 96859637 G A PTPDC1 Silent p.T261T 0.27 TCGA-19-5956-01 9 96860687 96860687 C A PTPDC1 Missense_Mutation p.F611L 0.08 tolerated(0.19) benign(0.002) TCGA-19-5956-01 9 97177490 97177490 C A HIATL1 Missense_Mutation p.F53L 0.08 deleterious(0.04) probably_damaging(0.914) TCGA-19-5956-01 9 97767852 97767852 G T C9orf3 Missense_Mutation p.R690I 0.11 deleterious(0.04) benign(0.215) TCGA-19-5956-01 9 97844901 97844901 C T C9orf3 Silent p.D788D 0.35 TCGA-19-5956-01 9 98643335 98643335 T C ERCC6L2 Silent p.D88D 0.07 TCGA-19-5956-01 9 98643345 98643345 A T ERCC6L2 Missense_Mutation p.N92Y 0.11 tolerated(0.09) benign(0.003) TCGA-19-5956-01 9 99250394 99250394 C T HABP4 Silent p.D341D 0.41 TCGA-19-5956-01 9 99580586 99580586 C A ZNF782 Missense_Mutation p.Q573H 0.21 tolerated(0.87) probably_damaging(0.942) TCGA-19-5956-01 9 99580856 99580856 G A ZNF782 Silent p.C483C 0.25 TCGA-19-5956-01 9 99699602 99699602 G A NUTM2G Silent p.P413P 0.09 TCGA-19-5956-01 X 100169124 100169124 C T XKRX 3'UTR 0.50 TCGA-19-5956-01 X 100274035 100274035 C T TRMT2B Missense_Mutation p.R438Q 0.24 deleterious(0.04) probably_damaging(0.942) TCGA-19-5956-01 X 100357265 100357265 C A CENPI Missense_Mutation p.P77T 0.14 tolerated(0.1) benign(0.016) TCGA-19-5956-01 X 100357370 100357370 C A CENPI Missense_Mutation p.L112I 0.35 deleterious(0.01) probably_damaging(0.926) TCGA-19-5956-01 X 100507633 100507633 G T DRP2 Missense_Mutation p.Q635H 0.33 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 X 100650748 100650748 T C RPL36A 3'UTR 0.94 TCGA-19-5956-01 X 100667106 100667106 C T HNRNPH2 Missense_Mutation p.R44C 0.40 tolerated(0.14) benign(0.009) TCGA-19-5956-01 X 100808405 100808405 G A ARMCX1 Silent p.R164R 0.09 TCGA-19-5956-01 X 100880624 100880624 T G ARMCX3 Missense_Mutation p.S219A 0.20 tolerated(1) possibly_damaging(0.886) TCGA-19-5956-01 X 101095797 101095797 G T NXF5 Missense_Mutation p.A184D 0.61 deleterious(0.02) probably_damaging(0.922) TCGA-19-5956-01 X 101408972 101408972 T C BEX5 Missense_Mutation p.Y89C 0.91 tolerated(0.06) benign(0.054) TCGA-19-5956-01 X 101821962 101821962 C A NXF4 RNA 0.38 TCGA-19-5956-01 X 101912257 101912257 G A GPRASP1 Missense_Mutation p.S1139N 0.46 tolerated(0.78) benign(0.001) TCGA-19-5956-01 X 103349335 103349335 G A SLC25A53 Silent p.G202G 0.19 TCGA-19-5956-01 X 10437851 10437851 G A MID1 Missense_Mutation p.L391F 0.89 deleterious(0) probably_damaging(0.966) TCGA-19-5956-01 X 105011031 105011031 C A IL1RAPL2 Missense_Mutation p.L480I 0.29 tolerated(0.37) benign(0.044) TCGA-19-5956-01 X 106093284 106093284 G T TBC1D8B Nonsense_Mutation p.E623* 0.44 TCGA-19-5956-01 X 106171862 106171862 C A CLDN2 Missense_Mutation p.P135H 0.24 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 X 106229280 106229280 C A MORC4 Missense_Mutation p.Q153H 0.92 deleterious(0) probably_damaging(1) TCGA-19-5956-01 X 106486612 106486612 C A PIH1D3 3'UTR 0.47 TCGA-19-5956-01 X 106819607 106819607 C A FRMPD3 Nonsense_Mutation p.Y486* 0.40 TCGA-19-5956-01 X 107148751 107148751 G A MID2 Missense_Mutation p.R323H 0.15 tolerated(0.12) possibly_damaging(0.885) TCGA-19-5956-01 X 107320769 107320769 G T VSIG1 3'UTR 0.44 TCGA-19-5956-01 X 107407828 107407828 A C COL4A6 Splice_Site p.X1358_splice 0.11 TCGA-19-5956-01 X 107430331 107430331 G T COL4A6 Missense_Mutation p.S650Y 0.91 probably_damaging(0.949) TCGA-19-5956-01 X 107814694 107814694 C T COL4A5 Missense_Mutation p.P146S 0.14 unknown(0) TCGA-19-5956-01 X 107823941 107823941 G T COL4A5 Missense_Mutation p.K288N 0.36 unknown(0) TCGA-19-5956-01 X 107939571 107939571 G T COL4A5 Missense_Mutation p.R1680L 0.40 probably_damaging(0.977) TCGA-19-5956-01 X 108868034 108868034 G A KCNE1L Silent p.C72C 0.36 TCGA-19-5956-01 X 108887383 108887383 C T ACSL4 Missense_Mutation p.V671I 0.40 tolerated(1) benign(0.009) TCGA-19-5956-01 X 109694177 109694177 G A RGAG1 Missense_Mutation p.G111E 0.88 tolerated(0.28) benign(0.333) TCGA-19-5956-01 X 109694829 109694829 A C RGAG1 Silent p.P328P 0.06 TCGA-19-5956-01 X 109697238 109697238 G A RGAG1 Silent p.A1131A 0.92 TCGA-19-5956-01 X 109764927 109764927 G A TDGF1P3 RNA 0.36 TCGA-19-5956-01 X 110006036 110006036 C A CHRDL1 Splice_Site p.X32_splice 0.88 TCGA-19-5956-01 X 110653400 110653400 C T DCX Missense_Mutation p.R157H 0.11 deleterious(0.01) probably_damaging(1) TCGA-19-5956-01 X 110970920 110970920 G T ALG13 Missense_Mutation p.Q723H 0.26 deleterious(0) probably_damaging(0.986) TCGA-19-5956-01 X 111097081 111097081 G T TRPC5 Missense_Mutation p.S385Y 0.89 deleterious(0) possibly_damaging(0.885) TCGA-19-5956-01 X 112048235 112048235 G A AMOT Silent p.I572I 0.91 TCGA-19-5956-01 X 11317077 11317077 C T AMELX Missense_Mutation p.T199I 0.40 deleterious(0) unknown(0) TCGA-19-5956-01 X 114357678 114357678 G T LRCH2 Silent p.R643R 0.96 TCGA-19-5956-01 X 114357708 114357708 A G LRCH2 Missense_Mutation p.F633L 0.41 tolerated(0.06) probably_damaging(0.986) TCGA-19-5956-01 X 115588936 115588936 C A SLC6A14 Silent p.I592I 0.22 TCGA-19-5956-01 X 115593125 115593125 C A CT83 Missense_Mutation p.R42I 0.12 deleterious(0) possibly_damaging(0.571) TCGA-19-5956-01 X 117044029 117044029 G A KLHL13 Missense_Mutation p.R204W 0.30 deleterious(0) possibly_damaging(0.886) TCGA-19-5956-01 X 117526957 117526957 C A WDR44 Silent p.V183V 0.17 TCGA-19-5956-01 X 118923963 118923963 C A RPL39 Missense_Mutation p.K5N 0.57 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 X 119077356 119077356 G T NKAP Silent p.S71S 0.79 TCGA-19-5956-01 X 119509268 119509268 C T ATP1B4 Missense_Mutation p.P202S 0.54 tolerated(0.81) possibly_damaging(0.593) TCGA-19-5956-01 X 119678368 119678368 G A CUL4B Nonsense_Mutation p.R369* 0.41 TCGA-19-5956-01 X 120009207 120009207 G A CT47B1 Silent p.F106F 0.27 TCGA-19-5956-01 X 122537286 122537286 A G GRIA3 Silent p.E403E 0.05 TCGA-19-5956-01 X 122551563 122551563 G A GRIA3 Missense_Mutation p.G604E 0.45 deleterious(0.01) probably_damaging(0.998) TCGA-19-5956-01 X 123159693 123159693 G A STAG2 Silent p.E16E 0.50 TCGA-19-5956-01 X 123480356 123480356 T C SH2D1A 5'UTR 1.00 TCGA-19-5956-01 X 123539035 123539035 C T TENM1 Missense_Mutation p.S1746N 0.32 tolerated(0.19) benign(0.001) TCGA-19-5956-01 X 123554573 123554573 G A TENM1 Nonsense_Mutation p.R1524* 0.88 TCGA-19-5956-01 X 123615585 123615585 G A TENM1 Nonsense_Mutation p.R1316* 0.94 TCGA-19-5956-01 X 123780611 123780611 G T TENM1 Silent p.I543I 0.98 TCGA-19-5956-01 X 127185847 127185847 C T ACTRT1 Silent p.L113L 0.46 TCGA-19-5956-01 X 12734490 12734490 A G FRMPD4 Missense_Mutation p.T638A 0.20 tolerated_low_confidence(0.19) benign(0.002) TCGA-19-5956-01 X 12734795 12734795 C A FRMPD4 Silent p.I739I 0.20 TCGA-19-5956-01 X 128710029 128710029 C A OCRL Nonsense_Mutation p.Y623* 0.89 TCGA-19-5956-01 X 128945486 128945486 C A ZDHHC9 Splice_Site p.X260_splice 0.39 TCGA-19-5956-01 X 129042673 129042673 T G UTP14A Silent p.A67A 0.90 TCGA-19-5956-01 X 12904630 12904630 T G TLR7 Missense_Mutation p.F335V 0.88 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 X 129804011 129804011 G A ENOX2 Missense_Mutation p.R237C 0.08 deleterious(0.02) benign(0.011) TCGA-19-5956-01 X 130218382 130218382 G A ARHGAP36 Splice_Site p.X250_splice 0.25 TCGA-19-5956-01 X 131218577 131218577 T G FRMD7 Missense_Mutation p.I228L 0.15 deleterious(0.02) probably_damaging(0.986) TCGA-19-5956-01 X 131234740 131234740 T G FRMD7 Missense_Mutation p.K21T 0.52 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 X 131516230 131516230 G A MBNL3 Silent p.F343F 0.37 TCGA-19-5956-01 X 132160012 132160012 C T USP26 Missense_Mutation p.R746K 0.09 tolerated(0.27) benign(0.156) TCGA-19-5956-01 X 132161297 132161297 A G USP26 Missense_Mutation p.S318P 0.11 tolerated(0.08) possibly_damaging(0.464) TCGA-19-5956-01 X 13337204 13337204 C A ATXN3L Nonsense_Mutation p.E284* 0.19 TCGA-19-5956-01 X 13337710 13337710 T G ATXN3L Missense_Mutation p.N115T 0.28 deleterious(0) probably_damaging(0.995) TCGA-19-5956-01 X 134427749 134427749 C A ZNF75D Missense_Mutation p.Q106H 0.94 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 X 135314040 135314040 T C MAP7D3 Missense_Mutation p.D359G 0.12 deleterious(0.01) benign(0.222) TCGA-19-5956-01 X 135429713 135429713 C A GPR112 Missense_Mutation p.S1283Y 0.51 tolerated(0.46) benign(0.001) TCGA-19-5956-01 X 135741396 135741396 G T CD40LG Missense_Mutation p.R203I 0.11 deleterious(0) benign(0.446) TCGA-19-5956-01 X 13645279 13645279 C T EGFL6 Nonsense_Mutation p.R480* 0.14 TCGA-19-5956-01 X 13765041 13765041 G T OFD1 Missense_Mutation p.S266I 0.33 tolerated(0.06) benign(0.009) TCGA-19-5956-01 X 1404685 1404685 G A CSF2RA Missense_Mutation p.A31T 0.19 tolerated(0.13) benign(0.024) TCGA-19-5956-01 X 140995326 140995326 G T MAGEC1 Missense_Mutation p.Q712H 0.40 tolerated_low_confidence(0.12) benign(0.216) TCGA-19-5956-01 X 140995658 140995658 C T MAGEC1 Missense_Mutation p.S823L 0.40 tolerated_low_confidence(0.46) unknown(0) TCGA-19-5956-01 X 140995985 140995985 C T MAGEC1 Missense_Mutation p.A932V 0.86 deleterious(0.01) unknown(0) TCGA-19-5956-01 X 142717865 142717865 C A SLITRK4 Missense_Mutation p.D354Y 0.40 deleterious(0) probably_damaging(0.997) TCGA-19-5956-01 X 144904727 144904727 C A SLITRK2 Missense_Mutation p.L262I 0.44 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 X 147743836 147743836 C A AFF2 Missense_Mutation p.F196L 0.22 tolerated(1) benign(0.001) TCGA-19-5956-01 X 148627207 148627207 C T CXorf40A Missense_Mutation p.P11S 0.83 deleterious(0) probably_damaging(0.913) TCGA-19-5956-01 X 14883644 14883644 A G FANCB 5'UTR 0.89 TCGA-19-5956-01 X 149639220 149639220 C T MAMLD1 Missense_Mutation p.R434C 0.93 deleterious(0.03) benign(0.104) TCGA-19-5956-01 X 149809741 149809741 G T MTM1 Splice_Site p.X177_splice 0.09 TCGA-19-5956-01 X 1505421 1505421 C T SLC25A6 3'UTR 0.95 TCGA-19-5956-01 X 150867257 150867257 G T PRRG3 Intron 0.15 TCGA-19-5956-01 X 150885793 150885793 G T FATE1 Missense_Mutation p.Q52H 0.49 deleterious(0.03) probably_damaging(0.995) TCGA-19-5956-01 X 150891298 150891298 G T FATE1 3'UTR 0.31 TCGA-19-5956-01 X 150912476 150912476 G A CNGA2 Missense_Mutation p.V501M 0.07 deleterious(0) probably_damaging(1) TCGA-19-5956-01 X 150912578 150912578 C T CNGA2 Nonsense_Mutation p.R535* 0.47 TCGA-19-5956-01 X 151821098 151821098 C T GABRQ Missense_Mutation p.T418M 0.49 tolerated(0.07) benign(0.021) TCGA-19-5956-01 X 151870123 151870123 C T MAGEA6 Silent p.F271F 0.20 TCGA-19-5956-01 X 152159344 152159344 C A PNMA5 Nonsense_Mutation p.E267* 0.41 TCGA-19-5956-01 X 152226109 152226109 C T PNMA3 Silent p.L233L 0.93 TCGA-19-5956-01 X 152994693 152994693 C T ABCD1 Silent p.L303L 0.09 TCGA-19-5956-01 X 153039150 153039150 C T PLXNB3 Silent p.L1110L 0.80 TCGA-19-5956-01 X 153070580 153070580 C T PDZD4 Missense_Mutation p.R245H 0.09 tolerated(0.17) benign(0.124) TCGA-19-5956-01 X 153133792 153133792 G A L1CAM Silent p.D556D 0.85 TCGA-19-5956-01 X 153490551 153490551 C T OPN1MW2 Missense_Mutation p.A96V 0.40 deleterious(0) probably_damaging(0.988) TCGA-19-5956-01 X 153539237 153539237 T C TKTL1 Missense_Mutation p.V134A 0.15 deleterious(0) probably_damaging(0.98) TCGA-19-5956-01 X 153580630 153580630 C T FLNA Missense_Mutation p.V2230M 0.18 deleterious(0) probably_damaging(0.991) TCGA-19-5956-01 X 153581719 153581719 C T FLNA Silent p.P1989P 0.13 TCGA-19-5956-01 X 153582536 153582536 T C FLNA Missense_Mutation p.D1847G 0.15 deleterious(0.03) benign(0.209) TCGA-19-5956-01 X 153596291 153596291 G A FLNA Missense_Mutation p.P181S 0.53 deleterious(0) possibly_damaging(0.908) TCGA-19-5956-01 X 153760816 153760816 G A G6PD Missense_Mutation p.S448L 0.44 deleterious(0) benign(0.041) TCGA-19-5956-01 X 153762270 153762270 G A G6PD Silent p.F280F 0.42 TCGA-19-5956-01 X 153764158 153764158 G T G6PD Missense_Mutation p.F117L 0.13 deleterious(0.01) benign(0.078) TCGA-19-5956-01 X 153927744 153927744 G A GAB3 Silent p.I390I 0.14 TCGA-19-5956-01 X 154007597 154007597 G T MPP1 Missense_Mutation p.S419Y 0.14 deleterious(0) probably_damaging(0.998) TCGA-19-5956-01 X 154221280 154221280 G T F8 Missense_Mutation p.L178I 0.44 tolerated(0.16) possibly_damaging(0.752) TCGA-19-5956-01 X 15425650 15425650 C T PIR Silent p.T196T 0.45 TCGA-19-5956-01 X 15474002 15474002 G T PIR Missense_Mutation p.A150D 0.45 deleterious(0.02) possibly_damaging(0.487) TCGA-19-5956-01 X 155239797 155239797 G T IL9R Missense_Mutation p.R430M 1.00 deleterious_low_confidence(0.02) benign(0.013) TCGA-19-5956-01 X 15527481 15527481 A C BMX Missense_Mutation p.E56D 0.12 tolerated(1) benign(0.006) TCGA-19-5956-01 X 15574250 15574250 C T BMX Missense_Mutation p.R670W 0.93 deleterious(0.02) possibly_damaging(0.684) TCGA-19-5956-01 X 15706876 15706876 G A CA5BP1 RNA 0.37 TCGA-19-5956-01 X 16711298 16711298 C T CTPS2 Missense_Mutation p.R202H 0.92 tolerated(0.05) probably_damaging(0.982) TCGA-19-5956-01 X 16711530 16711530 C A CTPS2 Missense_Mutation p.E173D 0.37 tolerated(0.34) benign(0.025) TCGA-19-5956-01 X 17024454 17024454 G T REPS2 Missense_Mutation p.E128D 0.44 tolerated(0.15) benign(0.218) TCGA-19-5956-01 X 1712363 1712363 C A AKAP17A Missense_Mutation p.A3E 0.25 deleterious(0.02) possibly_damaging(0.826) TCGA-19-5956-01 X 17165719 17165719 G T REPS2 3'UTR 0.38 TCGA-19-5956-01 X 17167171 17167171 T G REPS2 3'UTR 0.52 TCGA-19-5956-01 X 17743976 17743976 C A NHS Missense_Mutation p.L563M 0.36 deleterious(0) probably_damaging(1) TCGA-19-5956-01 X 18192379 18192379 C A BEND2 Splice_Site p.X585_splice 0.48 TCGA-19-5956-01 X 18230768 18230768 T G BEND2 Missense_Mutation p.N137H 0.86 deleterious(0.04) benign(0.041) TCGA-19-5956-01 X 18264908 18264908 C A SCML2 Missense_Mutation p.E537D 0.41 tolerated(0.32) benign(0.005) TCGA-19-5956-01 X 19380892 19380892 C A MAP3K15 Nonsense_Mutation p.E1215* 0.17 TCGA-19-5956-01 X 21458850 21458850 G T CNKSR2 Missense_Mutation p.R157I 0.29 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 X 22117235 22117235 G T PHEX Missense_Mutation p.D349Y 0.88 deleterious(0.02) probably_damaging(0.991) TCGA-19-5956-01 X 22196436 22196436 G A PHEX Missense_Mutation p.R510H 0.09 deleterious(0) possibly_damaging(0.65) TCGA-19-5956-01 X 24024165 24024165 C T KLHL15 Missense_Mutation p.D216N 0.07 tolerated(0.31) probably_damaging(0.999) TCGA-19-5956-01 X 24226475 24226475 G A ZFX Missense_Mutation p.A361T 0.92 tolerated(0.18) benign(0.393) TCGA-19-5956-01 X 24228819 24228819 G A ZFX Missense_Mutation p.E582K 0.48 tolerated(0.2) benign(0.096) TCGA-19-5956-01 X 24844711 24844711 G A POLA1 Silent p.T1237T 0.93 TCGA-19-5956-01 X 25014020 25014020 G A POLA1 Missense_Mutation p.E1448K 0.41 tolerated(0.37) benign(0.022) TCGA-19-5956-01 X 26212584 26212584 G T MAGEB6 Missense_Mutation p.Q207H 0.96 deleterious(0) probably_damaging(0.992) TCGA-19-5956-01 X 27766230 27766230 C T DCAF8L2 Silent p.G406G 0.11 TCGA-19-5956-01 X 27839912 27839912 C A MAGEB10 Silent p.I163I 0.92 TCGA-19-5956-01 X 27998751 27998751 A T DCAF8L1 Missense_Mutation p.F234Y 0.15 tolerated(0.24) benign(0.047) TCGA-19-5956-01 X 27999268 27999268 C T DCAF8L1 Missense_Mutation p.D62N 0.36 tolerated_low_confidence(0.47) benign(0.095) TCGA-19-5956-01 X 29301120 29301120 C T IL1RAPL1 Nonsense_Mutation p.R50* 0.09 TCGA-19-5956-01 X 2990183 2990183 G A ARSF Missense_Mutation p.G43E 0.16 deleterious(0) probably_damaging(1) TCGA-19-5956-01 X 30746910 30746910 G T GK 3'UTR 0.94 TCGA-19-5956-01 X 31196901 31196901 G A DMD Nonsense_Mutation p.R3370* 0.92 TCGA-19-5956-01 X 31893312 31893312 T C DMD Missense_Mutation p.D2364G 0.15 benign(0.005) TCGA-19-5956-01 X 3229476 3229476 G T MXRA5 Missense_Mutation p.F2256L 0.33 tolerated(0.75) benign(0.005) TCGA-19-5956-01 X 32360240 32360240 G A DMD Nonsense_Mutation p.R1967* 0.23 TCGA-19-5956-01 X 3238347 3238347 C T MXRA5 Silent p.P1793P 0.44 TCGA-19-5956-01 X 3238362 3238362 C T MXRA5 Silent p.P1788P 0.52 TCGA-19-5956-01 X 3238697 3238697 G A MXRA5 Missense_Mutation p.H1677Y 0.44 tolerated(0.38) benign(0.017) TCGA-19-5956-01 X 3240153 3240153 C A MXRA5 Missense_Mutation p.K1191N 0.96 deleterious(0.01) possibly_damaging(0.462) TCGA-19-5956-01 X 3242190 3242190 G T MXRA5 Missense_Mutation p.F512L 0.16 tolerated(0.67) benign(0.005) TCGA-19-5956-01 X 3248782 3248782 G T MXRA5 Nonsense_Mutation p.S74* 0.35 TCGA-19-5956-01 X 34149633 34149633 G A FAM47A Missense_Mutation p.R255C 1.00 tolerated(0.14) probably_damaging(0.963) TCGA-19-5956-01 X 37027682 37027682 C A FAM47C Missense_Mutation p.S400Y 0.95 tolerated(0.07) probably_damaging(0.998) TCGA-19-5956-01 X 37029400 37029400 C A FAM47C Missense_Mutation p.L973I 0.16 tolerated(0.18) possibly_damaging(0.618) TCGA-19-5956-01 X 37664264 37664264 C T CYBB Missense_Mutation p.A386V 0.93 deleterious(0.04) benign(0.426) TCGA-19-5956-01 X 37850142 37850142 C T CXorf27 Missense_Mutation p.T17I 0.85 tolerated(0.32) benign(0.002) TCGA-19-5956-01 X 37935824 37935824 C A SYTL5 Missense_Mutation p.L187I 0.50 tolerated(0.23) benign(0.196) TCGA-19-5956-01 X 37969703 37969703 C A SYTL5 Missense_Mutation p.P544T 0.33 tolerated(0.15) benign(0.022) TCGA-19-5956-01 X 37979692 37979692 C T SYTL5 Silent p.L582L 0.11 TCGA-19-5956-01 X 40982971 40982971 G T USP9X Missense_Mutation p.Q30H 1.00 tolerated_low_confidence(0.26) probably_damaging(0.976) TCGA-19-5956-01 X 41000626 41000626 A G USP9X Missense_Mutation p.Y368C 0.21 deleterious(0) probably_damaging(0.993) TCGA-19-5956-01 X 41055512 41055512 G A USP9X Missense_Mutation p.R1329H 0.33 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 X 41056715 41056715 G T USP9X Missense_Mutation p.E1444D 0.15 tolerated(0.34) probably_damaging(0.952) TCGA-19-5956-01 X 41064746 41064746 G T USP9X Missense_Mutation p.R1672M 0.86 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 X 41075825 41075825 G A USP9X Missense_Mutation p.R2002Q 0.92 tolerated(0.18) benign(0.008) TCGA-19-5956-01 X 41077711 41077711 G A USP9X Missense_Mutation p.R2099H 0.95 deleterious(0) probably_damaging(0.984) TCGA-19-5956-01 X 41203301 41203301 C T DDX3X Missense_Mutation p.R262C 0.92 deleterious(0.03) benign(0.104) TCGA-19-5956-01 X 41203305 41203305 G A DDX3X Missense_Mutation p.R263H 0.92 tolerated(0.05) benign(0.044) TCGA-19-5956-01 X 41428969 41428969 G T CASK Missense_Mutation p.H512N 0.12 deleterious(0.01) benign(0.098) TCGA-19-5956-01 X 41448799 41448799 G A CASK Missense_Mutation p.P401L 0.87 tolerated(0.12) benign(0.049) TCGA-19-5956-01 X 41554985 41554985 G A GPR34 Silent p.P33P 0.16 TCGA-19-5956-01 X 44109614 44109614 C A EFHC2 Missense_Mutation p.K228N 0.89 tolerated(0.07) benign(0.374) TCGA-19-5956-01 X 44386527 44386527 G A FUNDC1 Nonsense_Mutation p.R116* 0.45 TCGA-19-5956-01 X 44918662 44918662 A T KDM6A Missense_Mutation p.K382I 0.47 deleterious(0.04) possibly_damaging(0.836) TCGA-19-5956-01 X 44928937 44928937 G T KDM6A Missense_Mutation p.Q679H 0.75 deleterious_low_confidence(0) benign(0.281) TCGA-19-5956-01 X 46918004 46918004 C T JADE3 Missense_Mutation p.S666F 0.19 deleterious_low_confidence(0) possibly_damaging(0.677) TCGA-19-5956-01 X 47039374 47039374 G A RBM10 Missense_Mutation p.V333I 0.93 tolerated(0.11) benign(0.094) TCGA-19-5956-01 X 47774988 47774988 C A ZNF81 Missense_Mutation p.P315T 0.92 deleterious(0.01) benign(0.224) TCGA-19-5956-01 X 47836809 47836809 C A ZNF182 Missense_Mutation p.R226I 0.16 deleterious(0.01) probably_damaging(0.952) TCGA-19-5956-01 X 48051695 48051695 G A SSX5 Silent p.F142F 0.07 TCGA-19-5956-01 X 48336460 48336460 C T FTSJ1 Missense_Mutation p.R9W 0.95 deleterious(0) probably_damaging(0.972) TCGA-19-5956-01 X 48767144 48767144 G A SLC35A2 Missense_Mutation p.A74V 0.80 deleterious(0) benign(0.087) TCGA-19-5956-01 X 48891040 48891040 C T TFE3 Missense_Mutation p.R359Q 0.24 deleterious(0) benign(0.002) TCGA-19-5956-01 X 48932500 48932500 C T WDR45 Missense_Mutation p.D350N 0.16 tolerated(0.14) probably_damaging(0.988) TCGA-19-5956-01 X 49034388 49034388 G A PRICKLE3 Silent p.Y303Y 0.16 TCGA-19-5956-01 X 49109599 49109599 C T FOXP3 Silent p.T344T 0.73 TCGA-19-5956-01 X 49114015 49114015 G A FOXP3 Missense_Mutation p.T108M 0.96 deleterious_low_confidence(0) benign(0.026) TCGA-19-5956-01 X 49598539 49598539 T A PAGE4 3'UTR 0.50 TCGA-19-5956-01 X 49846491 49846491 C T CLCN5 Missense_Mutation p.A307V 1.00 deleterious(0.02) probably_damaging(0.999) TCGA-19-5956-01 X 50052771 50052771 G T CCNB3 Missense_Mutation p.K534N 0.43 tolerated(0.09) benign(0.353) TCGA-19-5956-01 X 50350561 50350561 G A SHROOM4 Missense_Mutation p.S1194L 0.45 tolerated(0.17) benign(0) TCGA-19-5956-01 X 50376275 50376275 C T SHROOM4 Missense_Mutation p.R933Q 0.82 deleterious(0.04) benign(0.072) TCGA-19-5956-01 X 50653806 50653806 G T BMP15 Missense_Mutation p.R8I 0.45 deleterious(0) possibly_damaging(0.785) TCGA-19-5956-01 X 53276283 53276283 G A IQSEC2 Missense_Mutation p.R873C 0.50 deleterious(0.01) benign(0.357) TCGA-19-5956-01 X 53432592 53432592 C A SMC1A Missense_Mutation p.D582Y 0.50 deleterious(0.01) possibly_damaging(0.905) TCGA-19-5956-01 X 53457746 53457746 C A RIBC1 Intron 0.40 TCGA-19-5956-01 X 53965636 53965636 G A PHF8 Silent p.L1046L 0.36 TCGA-19-5956-01 X 54470547 54470547 C T TSR2 Missense_Mutation p.A124V 0.86 tolerated(0.27) benign(0.025) TCGA-19-5956-01 X 55650499 55650499 G T FOXR2 Missense_Mutation p.G119W 0.88 tolerated(0.16) benign(0.325) TCGA-19-5956-01 X 55748665 55748665 C A RRAGB Missense_Mutation p.S58Y 0.16 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 X 57619633 57619633 C T ZXDB Silent p.R384R 0.09 TCGA-19-5956-01 X 57934561 57934561 C T ZXDA Missense_Mutation p.G765E 0.40 tolerated(0.26) benign(0.017) TCGA-19-5956-01 X 6451860 6451860 G A VCX3A Missense_Mutation p.P163S 0.24 deleterious(0.01) unknown(0) TCGA-19-5956-01 X 64958439 64958439 G A MSN Missense_Mutation p.R435Q 0.93 tolerated(0.13) benign(0.045) TCGA-19-5956-01 X 66937342 66937342 C T AR Silent p.D732D 0.96 TCGA-19-5956-01 X 67417055 67417055 C A OPHN1 Missense_Mutation p.W359C 0.47 deleterious(0) probably_damaging(0.999) TCGA-19-5956-01 X 68381995 68381995 C T PJA1 Missense_Mutation p.E363K 0.83 tolerated(0.43) benign(0.008) TCGA-19-5956-01 X 68382547 68382547 G A PJA1 Nonsense_Mutation p.R179* 0.36 TCGA-19-5956-01 X 69479135 69479135 G T P2RY4 Missense_Mutation p.L114I 0.18 deleterious(0.04) probably_damaging(0.98) TCGA-19-5956-01 X 69507140 69507140 C T PDZD11 Missense_Mutation p.R125H 0.40 deleterious(0) probably_damaging(0.911) TCGA-19-5956-01 X 69942529 69942529 G A TEX11 Missense_Mutation p.H330Y 0.93 tolerated(0.11) benign(0.257) TCGA-19-5956-01 X 70325888 70325888 C T CXorf65 Missense_Mutation p.S71N 0.87 tolerated(1) benign(0.004) TCGA-19-5956-01 X 70338643 70338643 C T MED12 Silent p.P13P 0.54 TCGA-19-5956-01 X 70339727 70339727 G T MED12 Missense_Mutation p.K132N 0.21 probably_damaging(0.992) TCGA-19-5956-01 X 70339930 70339930 C T MED12 Missense_Mutation p.R155W 0.09 probably_damaging(0.994) TCGA-19-5956-01 X 70373348 70373348 G C NLGN3 Missense_Mutation p.G180A 0.82 tolerated_low_confidence(0.31) benign(0.232) TCGA-19-5956-01 X 70463738 70463738 G A ZMYM3 Missense_Mutation p.P1125S 0.13 deleterious(0) probably_damaging(0.996) TCGA-19-5956-01 X 70469010 70469010 G A ZMYM3 Missense_Mutation p.R494C 0.85 deleterious(0) probably_damaging(0.976) TCGA-19-5956-01 X 70519916 70519916 G A NONO Missense_Mutation p.R469H 0.39 tolerated_low_confidence(0.07) possibly_damaging(0.84) TCGA-19-5956-01 X 70814207 70814207 G A ACRC Missense_Mutation p.S56N 0.24 possibly_damaging(0.587) TCGA-19-5956-01 X 70828860 70828860 G T ACRC Missense_Mutation p.D502Y 0.44 unknown(0) TCGA-19-5956-01 X 71521594 71521594 C T CITED1 Silent p.A213A 0.97 TCGA-19-5956-01 X 71875967 71875967 T C PHKA1 Intron 0.47 TCGA-19-5956-01 X 73063169 73063169 C A XIST RNA 0.87 TCGA-19-5956-01 X 74295384 74295384 C T ABCB7 Missense_Mutation p.R224Q 0.89 deleterious(0.01) probably_damaging(0.997) TCGA-19-5956-01 X 74494082 74494082 C T UPRT 5'UTR 0.26 TCGA-19-5956-01 X 75003251 75003251 C T MAGEE2 3'UTR 0.80 TCGA-19-5956-01 X 76776296 76776296 G T ATRX Silent p.I2390I 0.21 TCGA-19-5956-01 X 76777769 76777769 A T ATRX Missense_Mutation p.L2316Q 0.07 probably_damaging(0.999) TCGA-19-5956-01 X 76845361 76845361 G T ATRX Missense_Mutation p.L2054I 0.34 benign(0.325) TCGA-19-5956-01 X 76907720 76907720 G A ATRX Missense_Mutation p.R1481W 0.38 probably_damaging(0.999) TCGA-19-5956-01 X 76907765 76907765 C A ATRX Nonsense_Mutation p.E1466* 0.89 TCGA-19-5956-01 X 76953117 76953117 T C ATRX Missense_Mutation p.S66G 0.22 benign(0.101) TCGA-19-5956-01 X 77289312 77289312 G T ATP7A Missense_Mutation p.Q1168H 0.20 tolerated(0.15) benign(0.003) TCGA-19-5956-01 X 77381411 77381411 C A PGK1 3'UTR 0.13 TCGA-19-5956-01 X 7811923 7811923 C T VCX Missense_Mutation p.P163S 0.12 tolerated(0.12) unknown(0) TCGA-19-5956-01 X 7812124 7812124 G A VCX 3'UTR 0.14 TCGA-19-5956-01 X 78622712 78622712 T C ITM2A Translation_Start_Site p.M1? 0.30 deleterious(0) possibly_damaging(0.626) TCGA-19-5956-01 X 79985487 79985487 G A BRWD3 Missense_Mutation p.T387M 0.12 deleterious(0) probably_damaging(0.967) TCGA-19-5956-01 X 8138045 8138045 C T VCX2 3'UTR 0.71 TCGA-19-5956-01 X 85218933 85218933 T G CHM Missense_Mutation p.S147R 0.65 tolerated(0.38) benign(0.003) TCGA-19-5956-01 X 8761765 8761765 T G FAM9A Missense_Mutation p.Q288H 0.87 tolerated_low_confidence(0.06) unknown(0) TCGA-19-5956-01 X 8763172 8763172 C A FAM9A Nonsense_Mutation p.E260* 0.33 TCGA-19-5956-01 X 88008719 88008719 T C CPXCR1 Missense_Mutation p.S102P 0.92 tolerated(0.27) possibly_damaging(0.82) TCGA-19-5956-01 X 95993750 95993750 G T DIAPH2 Nonsense_Mutation p.E111* 0.13 TCGA-19-5958-01 10 54053584 54053584 G A PRKG1 Missense_Mutation p.S662N 0.35 deleterious(0) possibly_damaging(0.76) TCGA-19-5958-01 10 99130292 99130292 G A RRP12 Missense_Mutation p.S870L 0.10 deleterious(0.01) possibly_damaging(0.801) TCGA-19-5958-01 11 118037799 118037799 G T SCN2B Missense_Mutation p.P151T 0.36 tolerated(0.16) benign(0.417) TCGA-19-5958-01 11 209871 209871 G A RIC8A Silent p.T199T 0.30 TCGA-19-5958-01 11 93212165 93212165 G A SMCO4 3'UTR 0.32 TCGA-19-5958-01 12 130833883 130833883 T A PIWIL1 Silent p.T278T 0.34 TCGA-19-5958-01 13 110436118 110436118 C T IRS2 Silent p.L761L 0.31 TCGA-19-5958-01 14 106780924 106780924 G C IGHV4-28 Missense_Mutation p.L8V 0.24 deleterious(0.02) benign(0.165) TCGA-19-5958-01 14 24845826 24845826 C T NFATC4 Missense_Mutation p.R858W 0.38 deleterious_low_confidence(0) possibly_damaging(0.453) TCGA-19-5958-01 15 25924506 25924506 A T ATP10A Silent p.S1494S 0.33 TCGA-19-5958-01 16 1259347 1259347 G A CACNA1H Missense_Mutation p.D1227N 0.13 tolerated(0.15) benign(0.05) TCGA-19-5958-01 16 4409376 4409376 C T CORO7 Missense_Mutation p.R754H 0.39 deleterious(0.02) probably_damaging(1) TCGA-19-5958-01 16 4731589 4731589 G A MGRN1 Silent p.S390S 0.34 TCGA-19-5958-01 16 50664787 50664787 C T NKD1 Missense_Mutation p.R221W 0.36 deleterious(0) probably_damaging(1) TCGA-19-5958-01 16 57949167 57949167 G A CNGB1 Missense_Mutation p.P764S 0.26 deleterious(0.01) probably_damaging(0.926) TCGA-19-5958-01 17 10355578 10355578 G A MYH4 Missense_Mutation p.R1140C 0.35 deleterious(0.03) probably_damaging(1) TCGA-19-5958-01 17 11572540 11572540 C T DNAH9 Missense_Mutation p.P964L 0.38 benign(0.03) TCGA-19-5958-01 17 27182172 27182172 A G ERAL1 Silent p.Q40Q 0.20 TCGA-19-5958-01 19 10398453 10398453 G A ICAM4 Missense_Mutation p.A187T 0.11 deleterious_low_confidence(0) possibly_damaging(0.499) TCGA-19-5958-01 19 15918076 15918076 C T OR10H1 Missense_Mutation p.V258I 0.16 tolerated(1) benign(0.032) TCGA-19-5958-01 19 43766196 43766196 G A PSG9 Silent p.D175D 0.34 TCGA-19-5958-01 19 49360714 49360714 G A PLEKHA4 Missense_Mutation p.R338W 0.39 deleterious(0) probably_damaging(0.989) TCGA-19-5958-01 1 104163234 104163234 C G AMY2A Missense_Mutation p.T269R 0.11 deleterious(0) probably_damaging(1) TCGA-19-5958-01 1 40960711 40960711 G A ZFP69 Silent p.T187T 0.36 TCGA-19-5958-01 21 42770891 42770891 G A MX2 Missense_Mutation p.R406H 0.34 tolerated(0.07) benign(0.003) TCGA-19-5958-01 21 45861748 45861748 A T TRPM2 3'UTR 0.41 TCGA-19-5958-01 22 29704480 29704480 C A GAS2L1 Missense_Mutation p.L129M 0.24 tolerated(0.12) probably_damaging(0.999) TCGA-19-5958-01 2 135738725 135738725 G A MAP3K19 Missense_Mutation p.P1196S 0.35 deleterious(0) probably_damaging(0.98) TCGA-19-5958-01 2 179605482 179605482 T A TTN Missense_Mutation p.T4160S 0.31 TCGA-19-5958-01 2 37429106 37429106 C G CEBPZ-AS1 3'UTR 0.12 TCGA-19-5958-01 2 44152273 44152273 C A LRPPRC Silent p.V943V 0.36 TCGA-19-5958-01 2 73315641 73315641 G C RAB11FIP5 Missense_Mutation p.Q369E 0.30 tolerated(0.12) benign(0) TCGA-19-5958-01 2 84777113 84777113 C T DNAH6 Nonsense_Mutation p.R473* 0.47 TCGA-19-5958-01 2 95483012 95483012 T C ANKRD20A8P RNA 0.24 TCGA-19-5958-01 3 53757913 53757913 A G CACNA1D Missense_Mutation p.I683V 0.31 deleterious(0.04) probably_damaging(0.976) TCGA-19-5958-01 4 79236756 79236756 C A FRAS1 Missense_Mutation p.Q563K 0.30 benign(0.071) TCGA-19-5958-01 5 135385160 135385160 G T TGFBI Missense_Mutation p.M268I 0.33 tolerated(0.4) benign(0.004) TCGA-19-5958-01 5 140559327 140559327 C T PCDHB8 Missense_Mutation p.A571V 0.18 tolerated_low_confidence(0.05) benign(0.087) TCGA-19-5958-01 5 149925000 149925000 C T NDST1 Silent p.V699V 0.35 TCGA-19-5958-01 5 150512089 150512089 G A ANXA6 Silent p.A228A 0.32 TCGA-19-5958-01 5 169098173 169098174 TA - DOCK2 Frame_Shift_Del p.Y106Cfs*34 0.30 TCGA-19-5958-01 5 45303842 45303842 A T HCN1 Missense_Mutation p.F493I 0.34 deleterious(0.02) probably_damaging(0.995) TCGA-19-5958-01 5 57754862 57754862 C T PLK2 Missense_Mutation p.A110T 0.37 deleterious(0.02) probably_damaging(0.997) TCGA-19-5958-01 5 67589149 67589149 A T PIK3R1 Missense_Mutation p.K379N 0.09 deleterious(0) probably_damaging(1) TCGA-19-5958-01 6 160819102 160819102 A G SLC22A3 Missense_Mutation p.Y174C 0.37 deleterious(0) probably_damaging(0.997) TCGA-19-5958-01 6 27222902 27222902 G T PRSS16 Missense_Mutation p.G490W 0.30 deleterious(0) possibly_damaging(0.84) TCGA-19-5958-01 6 31721395 31721395 G T MSH5 Missense_Mutation p.V335F 0.32 tolerated(0.58) benign(0.007) TCGA-19-5958-01 6 90333750 90333750 C T ANKRD6 Missense_Mutation p.R398W 0.45 deleterious(0) probably_damaging(0.999) TCGA-19-5958-01 7 151970848 151970848 C A KMT2C Missense_Mutation p.Q318H 0.04 benign(0.119) TCGA-19-5958-01 7 87135283 87135283 G A ABCB1 Missense_Mutation p.A1189V 0.32 deleterious(0) probably_damaging(1) TCGA-19-5958-01 8 110346274 110346274 G A NUDCD1 5'UTR 0.37 TCGA-19-5958-01 8 119593041 119593041 A T SAMD12 Silent p.S35S 0.34 TCGA-19-5958-01 9 100971301 100971301 C T TBC1D2 Missense_Mutation p.R600Q 0.35 tolerated(0.19) benign(0.053) TCGA-19-5958-01 X 106109162 106109162 C T TBC1D8B Missense_Mutation p.A854V 0.70 tolerated(0.15) benign(0.037) TCGA-19-5958-01 X 54785074 54785074 C T ITIH6 Missense_Mutation p.R478H 0.69 tolerated(1) benign(0.001) TCGA-19-5958-01 Y 4925190 4925190 T A PCDH11Y Missense_Mutation p.I109N 0.73 deleterious(0) probably_damaging(0.926) TCGA-19-5959-01 10 50901822 50901822 G T C10orf53 Missense_Mutation p.V34L 0.88 tolerated_low_confidence(0.07) probably_damaging(0.994) TCGA-19-5959-01 10 70644150 70644150 C T STOX1 Nonsense_Mutation p.Q200* 0.75 TCGA-19-5959-01 10 89692810 89692810 A - PTEN Frame_Shift_Del p.E99Nfs*14 0.39 TCGA-19-5959-01 11 20636272 20636272 A T SLC6A5 Missense_Mutation p.T345S 0.48 tolerated(0.25) benign(0.093) TCGA-19-5959-01 11 55890213 55890213 G A OR8H3 Missense_Mutation p.R122H 0.37 deleterious(0.03) benign(0.226) TCGA-19-5959-01 11 59210760 59210760 C T OR5A1 Missense_Mutation p.T40I 0.45 tolerated(0.81) benign(0) TCGA-19-5959-01 11 61249365 61249365 C T PPP1R32 Silent p.Y28Y 0.40 TCGA-19-5959-01 11 65561705 65561705 C T OVOL1 Missense_Mutation p.R102C 0.34 deleterious(0) benign(0.312) TCGA-19-5959-01 11 71249153 71249153 G A KRTAP5-8 Missense_Mutation p.G18S 0.31 tolerated_low_confidence(0.23) unknown(0) TCGA-19-5959-01 11 74979943 74979943 C T ARRB1 Silent p.P361P 0.35 TCGA-19-5959-01 12 113346549 113346549 G A OAS1 Missense_Mutation p.R130H 0.45 deleterious(0.02) probably_damaging(0.99) TCGA-19-5959-01 12 13716218 13716218 G C GRIN2B Silent p.A1318A 0.43 TCGA-19-5959-01 12 80665575 80665575 G C OTOGL Missense_Mutation p.C880S 0.43 deleterious(0) probably_damaging(0.999) TCGA-19-5959-01 14 106757893 106757893 C T IGHV2-26 Silent p.T38T 0.39 TCGA-19-5959-01 14 20443959 20443959 C T OR4K15 Silent p.D94D 0.33 TCGA-19-5959-01 14 21543075 21543075 G T ARHGEF40 Missense_Mutation p.D396Y 0.38 deleterious(0.02) possibly_damaging(0.855) TCGA-19-5959-01 14 21871175 21871175 C T CHD8 Splice_Site p.X1238_splice 0.54 TCGA-19-5959-01 14 69356891 69356891 C T ACTN1 Missense_Mutation p.R400Q 0.46 tolerated(0.11) benign(0.209) TCGA-19-5959-01 15 25442537 25442537 C T SNORD115-14 3'Flank 0.55 TCGA-19-5959-01 15 33261285 33261285 C T FMN1 Missense_Mutation p.A650T 0.43 tolerated_low_confidence(0.14) unknown(0) TCGA-19-5959-01 15 68643617 68643617 G A ITGA11 Silent p.N291N 0.35 TCGA-19-5959-01 15 75980091 75980091 C T CSPG4 Silent p.L1105L 0.50 TCGA-19-5959-01 15 76430102 76430102 C T C15orf27 Silent p.D31D 0.41 TCGA-19-5959-01 15 81429012 81429012 C T C15orf26 Silent p.D105D 0.32 TCGA-19-5959-01 15 89430480 89430480 C A HAPLN3 Missense_Mutation p.G17V 0.47 deleterious(0.03) unknown(0) TCGA-19-5959-01 16 10788509 10788509 C T TEKT5 Silent p.P74P 0.06 TCGA-19-5959-01 16 1412483 1412483 G A GNPTG Missense_Mutation p.R186Q 0.46 tolerated(1) benign(0.01) TCGA-19-5959-01 16 31336846 31336846 G A ITGAM Missense_Mutation p.R845H 0.54 tolerated(0.26) benign(0.049) TCGA-19-5959-01 16 56396099 56396099 G C AMFR 3'UTR 0.41 TCGA-19-5959-01 16 68010069 68010069 C T DPEP3 Missense_Mutation p.R411H 0.12 deleterious(0.02) possibly_damaging(0.534) TCGA-19-5959-01 16 76482757 76482757 G A CNTNAP4 Missense_Mutation p.R254H 0.41 tolerated(0.2) benign(0.002) TCGA-19-5959-01 16 82033639 82033639 G A SDR42E1 Missense_Mutation p.R87W 0.37 deleterious(0.04) benign(0.017) TCGA-19-5959-01 16 83704506 83704506 G A CDH13 Missense_Mutation p.G452R 0.36 deleterious(0) probably_damaging(1) TCGA-19-5959-01 17 18281180 18281180 C T EVPLL 5'UTR 0.60 TCGA-19-5959-01 17 26666722 26666722 G A TNFAIP1 Missense_Mutation p.G59R 0.49 deleterious(0.02) possibly_damaging(0.887) TCGA-19-5959-01 17 39619277 39619277 G A KRT32 Missense_Mutation p.T341M 0.39 deleterious(0.02) benign(0.039) TCGA-19-5959-01 17 46806000 46806000 G A HOXB13 5'UTR 0.29 TCGA-19-5959-01 18 50451729 50451729 T C DCC Missense_Mutation p.L325P 0.38 deleterious(0) probably_damaging(0.999) TCGA-19-5959-01 19 11361720 11361720 G A DOCK6 Nonsense_Mutation p.R184* 0.19 TCGA-19-5959-01 19 15905063 15905063 A G OR10H5 Missense_Mutation p.T69A 0.30 deleterious(0) benign(0.001) TCGA-19-5959-01 19 3909561 3909561 G A ATCAY Missense_Mutation p.R242Q 0.28 tolerated(0.05) possibly_damaging(0.897) TCGA-19-5959-01 19 46832519 46832519 A G HIF3A Missense_Mutation p.D499G 0.27 deleterious(0.01) probably_damaging(0.995) TCGA-19-5959-01 19 52272915 52272915 C T FPR2 Missense_Mutation p.T335M 0.40 deleterious(0) possibly_damaging(0.878) TCGA-19-5959-01 19 57133247 57133247 C T ZNF71 Missense_Mutation p.R198C 0.38 tolerated(0.06) possibly_damaging(0.646) TCGA-19-5959-01 19 5824104 5824104 C T NRTN 5'UTR 0.23 TCGA-19-5959-01 19 6534936 6534936 C T TNFSF9 Silent p.A208A 0.26 TCGA-19-5959-01 1 112305594 112305594 C T DDX20 Missense_Mutation p.A426V 0.07 deleterious(0.03) probably_damaging(0.998) TCGA-19-5959-01 1 152185501 152185501 T A HRNR 3'UTR 0.43 TCGA-19-5959-01 1 152382359 152382359 G A CRNN Missense_Mutation p.P400L 0.35 tolerated(1) benign(0) TCGA-19-5959-01 1 152552417 152552417 G A LCE3D 5'UTR 0.56 TCGA-19-5959-01 1 158153825 158153825 C T CD1D Missense_Mutation p.T329I 0.49 tolerated(0.45) benign(0.009) TCGA-19-5959-01 1 173883833 173883833 C T SERPINC1 Missense_Mutation p.R89H 0.47 tolerated(0.13) benign(0.19) TCGA-19-5959-01 1 186280588 186280588 G A PRG4 Missense_Mutation p.R1218H 0.41 unknown(0) TCGA-19-5959-01 1 197889248 197889248 C T LHX9 Silent p.S107S 0.46 TCGA-19-5959-01 1 2234792 2234792 G A SKI Silent p.A388A 0.43 TCGA-19-5959-01 1 228509734 228509734 G A OBSCN Silent p.A6021A 0.42 TCGA-19-5959-01 1 42048030 42048030 C T HIVEP3 Silent p.E813E 0.45 TCGA-19-5959-01 1 54375700 54375700 A C DIO1 3'UTR 0.34 TCGA-19-5959-01 1 59041860 59041860 C T TACSTD2 Silent p.L323L 0.47 TCGA-19-5959-01 1 62677113 62677113 C T L1TD1 3'UTR 0.36 TCGA-19-5959-01 20 32000203 32000203 C T SNTA1 Silent p.L313L 0.33 TCGA-19-5959-01 20 5903871 5903871 C T CHGB Missense_Mutation p.R361C 0.26 deleterious(0) probably_damaging(0.939) TCGA-19-5959-01 20 62178625 62178625 C T SRMS Silent p.A64A 0.27 TCGA-19-5959-01 21 47850134 47850134 T C PCNT Missense_Mutation p.V2634A 0.09 possibly_damaging(0.539) TCGA-19-5959-01 2 103040451 103040451 G T IL18RAP Missense_Mutation p.W84L 0.37 deleterious(0) probably_damaging(1) TCGA-19-5959-01 2 170112639 170112639 G A LRP2 Missense_Mutation p.P916L 0.38 probably_damaging(1) TCGA-19-5959-01 2 179442111 179442111 G A TTN Missense_Mutation p.A22984V 0.36 TCGA-19-5959-01 2 228195421 228195421 A T MFF Missense_Mutation p.T40S 0.43 deleterious(0.01) probably_damaging(0.99) TCGA-19-5959-01 2 234545533 234545533 C T UGT1A10 Missense_Mutation p.S122L 0.41 tolerated(0.14) benign(0.156) TCGA-19-5959-01 2 242755707 242755707 G A NEU4 Missense_Mutation p.R22Q 0.42 deleterious(0.04) probably_damaging(1) TCGA-19-5959-01 2 55563820 55563821 TC - CCDC88A Frame_Shift_Del p.R551Tfs*3 0.27 TCGA-19-5959-01 3 108276241 108276241 C A KIAA1524 Missense_Mutation p.M678I 0.46 tolerated(0.07) benign(0.253) TCGA-19-5959-01 3 13670420 13670420 C T FBLN2 Missense_Mutation p.T862M 0.27 deleterious(0.03) probably_damaging(0.955) TCGA-19-5959-01 3 13670486 13670486 A G FBLN2 Missense_Mutation p.Q884R 0.31 deleterious(0.03) benign(0.307) TCGA-19-5959-01 3 19575088 19575088 G A KCNH8 Missense_Mutation p.G941R 0.43 tolerated_low_confidence(0.08) benign(0.001) TCGA-19-5959-01 3 46542293 46542293 C T RTP3 Silent p.Y201Y 0.38 TCGA-19-5959-01 3 52433096 52433096 G C DNAH1 Missense_Mutation p.G4107A 0.05 probably_damaging(1) TCGA-19-5959-01 3 52563292 52563292 G A NT5DC2 Silent p.N97N 0.40 TCGA-19-5959-01 4 3432428 3432428 C T RGS12 Missense_Mutation p.T1287M 0.62 tolerated(0.12) possibly_damaging(0.475) TCGA-19-5959-01 4 47864932 47864932 T C NFXL1 Silent p.R749R 0.04 TCGA-19-5959-01 4 48069656 48069656 A T TXK Nonstop_Mutation p.*528Rext*37 0.44 TCGA-19-5959-01 4 68934340 68934340 A G TMPRSS11F Missense_Mutation p.W251R 0.48 tolerated(1) benign(0.002) TCGA-19-5959-01 4 77102252 77102255 TCCC - SCARB2 Splice_Site p.X92_splice 0.34 TCGA-19-5959-01 5 140215418 140215418 G A PCDHA7 Missense_Mutation p.A484T 0.45 tolerated_low_confidence(0.05) benign(0.3) TCGA-19-5959-01 5 174869392 174869392 G A DRD1 Silent p.H237H 0.41 TCGA-19-5959-01 5 19503219 19503219 C G CDH18 Splice_Site p.X505_splice 0.52 TCGA-19-5959-01 5 22078686 22078686 C A CDH12 Nonsense_Mutation p.E34* 0.38 TCGA-19-5959-01 5 26881626 26881626 G A CDH9 Silent p.G663G 0.42 TCGA-19-5959-01 5 36035988 36035988 C T UGT3A2 Missense_Mutation p.V462I 0.38 tolerated(1) benign(0.002) TCGA-19-5959-01 6 119301415 119301415 G A FAM184A Missense_Mutation p.T730M 0.48 tolerated(0.09) probably_damaging(0.954) TCGA-19-5959-01 6 74229088 74229088 A G EEF1A1 Missense_Mutation p.I99T 0.37 deleterious_low_confidence(0.01) probably_damaging(0.995) TCGA-19-5959-01 6 90660866 90660866 G A BACH2 Missense_Mutation p.P320L 0.56 deleterious_low_confidence(0.03) benign(0.015) TCGA-19-5959-01 7 103205876 103205876 A G RELN Missense_Mutation p.S1687P 0.40 deleterious(0) probably_damaging(0.995) TCGA-19-5959-01 7 103338351 103338351 G A RELN Silent p.L364L 0.29 TCGA-19-5959-01 7 146825899 146825899 A G CNTNAP2 Missense_Mutation p.R352G 0.26 deleterious(0) benign(0.004) TCGA-19-5959-01 7 150069842 150069842 G A REPIN1 Silent p.S561S 0.38 TCGA-19-5959-01 7 2687687 2687687 G T TTYH3 Missense_Mutation p.G241W 0.32 tolerated(0.07) probably_damaging(0.999) TCGA-19-5959-01 7 36492275 36492275 C G ANLN 3'UTR 0.25 TCGA-19-5959-01 7 88423665 88423665 C T C7orf62 Missense_Mutation p.D198N 0.34 tolerated(0.1) probably_damaging(0.948) TCGA-19-5959-01 8 104922664 104922664 G C RIMS2 Intron 0.47 TCGA-19-5959-01 8 122641443 122641443 A G HAS2 Silent p.F46F 0.32 TCGA-19-5959-01 8 30701172 30701172 G A TEX15 Nonsense_Mutation p.R1788* 0.50 TCGA-19-5959-01 8 95792643 95792643 G A DPY19L4 Silent p.E544E 0.56 TCGA-19-5959-01 9 135702390 135702390 C T AK8 Missense_Mutation p.R203H 0.38 deleterious(0) probably_damaging(1) TCGA-19-5959-01 9 140881238 140881238 A G CACNA1B Missense_Mutation p.N636D 0.41 tolerated(0.08) benign(0.154) TCGA-19-5959-01 9 99799549 99799549 C T CTSV Silent p.T127T 0.41 TCGA-19-5959-01 X 129272643 129272643 G A AIFM1 Missense_Mutation p.R298W 0.35 deleterious(0) possibly_damaging(0.842) TCGA-19-5959-01 X 135431775 135431775 C T GPR112 Silent p.D1970D 0.42 TCGA-19-5959-01 X 151896155 151896155 G T MAGEA12 3'Flank 0.35 TCGA-19-5959-01 X 153049211 153049211 C A SRPK3 Missense_Mutation p.T260N 0.31 tolerated(0.59) benign(0.004) TCGA-19-5959-01 X 15841126 15841126 G A ZRSR2 Missense_Mutation p.G404R 0.35 tolerated(0.27) unknown(0) TCGA-19-5959-01 X 31089936 31089936 G A FTHL17 Silent p.D45D 0.41 TCGA-19-5959-01 X 53591568 53591568 C - HUWE1 Frame_Shift_Del p.Q2333Sfs*19 0.32 TCGA-19-5959-01 X 68725733 68725733 C T FAM155B Missense_Mutation p.T203M 0.31 deleterious(0) probably_damaging(0.994) TCGA-19-5960-01 10 103716424 103716424 G - C10orf76 Frame_Shift_Del p.S546Afs*25 0.49 TCGA-19-5960-01 10 12802954 12802954 G A CAMK1D Missense_Mutation p.G103S 0.93 deleterious(0) probably_damaging(1) TCGA-19-5960-01 11 118133277 118133277 G A MPZL2 Silent p.Y104Y 0.42 TCGA-19-5960-01 11 128680531 128680531 G T FLI1 Missense_Mutation p.S336I 0.62 deleterious(0) probably_damaging(1) TCGA-19-5960-01 11 4566796 4566796 G A OR52M1 Missense_Mutation p.V126M 0.78 deleterious(0.02) benign(0.094) TCGA-19-5960-01 11 94113665 94113665 G A GPR83 Missense_Mutation p.L308F 0.88 deleterious(0) probably_damaging(1) TCGA-19-5960-01 12 86199652 86199652 G A RASSF9 Missense_Mutation p.R46C 0.43 deleterious(0) probably_damaging(0.95) TCGA-19-5960-01 13 100515267 100515267 A G CLYBL Missense_Mutation p.H154R 0.45 tolerated(0.27) benign(0.009) TCGA-19-5960-01 13 101707584 101707584 C A NALCN 3'UTR 0.26 TCGA-19-5960-01 13 36700120 36700120 G T DCLK1 Missense_Mutation p.S52Y 0.44 deleterious(0) unknown(0) TCGA-19-5960-01 13 88329407 88329407 C T SLITRK5 Silent p.D588D 0.43 TCGA-19-5960-01 16 10783110 10783110 C T TEKT5 Missense_Mutation p.R240Q 0.45 tolerated(0.34) benign(0.081) TCGA-19-5960-01 17 73625102 73625102 G A RECQL5 Missense_Mutation p.P801S 0.28 tolerated(0.51) benign(0.057) TCGA-19-5960-01 18 60036664 60036664 C T TNFRSF11A Missense_Mutation p.A505V 0.82 tolerated(0.16) benign(0.007) TCGA-19-5960-01 19 4171806 4171806 C T CREB3L3 Missense_Mutation p.A409V 0.38 tolerated_low_confidence(0.35) benign(0.001) TCGA-19-5960-01 19 54744788 54744788 C T LILRA6 Missense_Mutation p.G292S 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-19-5960-01 1 152083402 152083402 C G TCHH Missense_Mutation p.R764P 0.44 unknown(0) TCGA-19-5960-01 1 228034069 228034069 A G PRSS38 3'UTR 0.73 TCGA-19-5960-01 1 228505193 228505193 G T OBSCN Missense_Mutation p.E5487D 0.43 probably_damaging(0.997) TCGA-19-5960-01 1 38297931 38297931 C G MTF1 Missense_Mutation p.E352Q 0.41 deleterious(0.03) possibly_damaging(0.894) TCGA-19-5960-01 1 55470704 55470704 G A BSND Missense_Mutation p.V63I 0.38 tolerated(0.38) benign(0.058) TCGA-19-5960-01 1 91840986 91840986 C T HFM1 Silent p.K538K 0.44 TCGA-19-5960-01 20 49508976 49508976 G T ADNP Missense_Mutation p.H759N 0.49 deleterious(0.03) benign(0.099) TCGA-19-5960-01 20 57610036 57610036 C T SLMO2 3'UTR 0.35 TCGA-19-5960-01 21 35890504 35890504 C T RCAN1 Missense_Mutation p.V213I 0.45 tolerated(0.09) probably_damaging(0.996) TCGA-19-5960-01 2 179432795 179432795 C T TTN Missense_Mutation p.V26022I 0.52 TCGA-19-5960-01 2 26596336 26596336 G A EPT1 Missense_Mutation p.V138M 0.43 deleterious(0.02) probably_damaging(0.968) TCGA-19-5960-01 2 90229452 90229452 C T IGKV1D-42 Missense_Mutation p.T91M 0.44 deleterious(0) probably_damaging(0.926) TCGA-19-5960-01 3 122003250 122003250 G A CASR Missense_Mutation p.V827I 0.40 deleterious(0) probably_damaging(0.999) TCGA-19-5960-01 3 130313143 130313143 G C COL6A6 Missense_Mutation p.G1497R 0.33 deleterious(0) probably_damaging(1) TCGA-19-5960-01 3 189587160 189587160 C T TP63 Nonsense_Mutation p.R393* 0.52 TCGA-19-5960-01 3 197497100 197497100 G T FYTTD1 Missense_Mutation p.S161I 0.27 tolerated(0.4) benign(0.057) TCGA-19-5960-01 3 38266149 38266149 T C OXSR1 Missense_Mutation p.F264L 0.56 deleterious(0.02) benign(0.276) TCGA-19-5960-01 3 42242442 42242442 C T TRAK1 Silent p.C441C 0.44 TCGA-19-5960-01 4 110895931 110895931 A T EGF Missense_Mutation p.Q599H 0.40 tolerated(0.05) possibly_damaging(0.513) TCGA-19-5960-01 5 176519769 176519769 G A FGFR4 Nonsense_Mutation p.W347* 0.40 TCGA-19-5960-01 5 41196027 41196027 T C C6 Missense_Mutation p.I152V 0.48 tolerated(0.06) possibly_damaging(0.519) TCGA-19-5960-01 5 43487196 43487196 C A C5orf34 Missense_Mutation p.G580C 0.30 deleterious(0.01) probably_damaging(0.973) TCGA-19-5960-01 6 158487679 158487679 G A SYNJ2 Intron 0.71 TCGA-19-5960-01 6 37186701 37186701 G T TMEM217 Missense_Mutation p.H36N 0.04 deleterious(0.01) possibly_damaging(0.848) TCGA-19-5960-01 6 38830180 38830180 G A DNAH8 Missense_Mutation p.V1869M 0.85 probably_damaging(1) TCGA-19-5960-01 6 40400626 40400626 G A LRFN2 Missense_Mutation p.T76M 0.97 deleterious(0) probably_damaging(0.982) TCGA-19-5960-01 7 141365018 141365018 C G KIAA1147 Missense_Mutation p.E307D 0.34 tolerated(0.68) benign(0.002) TCGA-19-5960-01 7 150695737 150695737 G A NOS3 Missense_Mutation p.R262Q 0.35 tolerated(0.05) benign(0.003) TCGA-19-5960-01 7 97862242 97862242 G A TECPR1 Missense_Mutation p.P572L 0.31 deleterious(0.02) probably_damaging(0.98) TCGA-19-5960-01 8 57905955 57905955 G A IMPAD1 Missense_Mutation p.R64C 0.10 deleterious(0) probably_damaging(0.999) TCGA-19-5960-01 8 80954870 80954870 C T TPD52 Silent p.K180K 0.35 TCGA-19-5960-01 9 139818449 139818449 G A TRAF2 Silent p.Q428Q 0.42 TCGA-19-A60I-01 10 118084838 118084838 C T CCDC172 Missense_Mutation p.R35C 0.78 deleterious(0.01) probably_damaging(0.961) TCGA-19-A60I-01 10 17083117 17083117 C T CUBN Missense_Mutation p.R1311Q 0.85 tolerated(1) benign(0.001) TCGA-19-A60I-01 11 32975611 32975611 C T QSER1 Silent p.D1333D 0.44 TCGA-19-A60I-01 11 61960870 61960870 G A SCGB1D1 Splice_Site p.X82_splice 0.29 TCGA-19-A60I-01 12 113447973 113447973 G A OAS2 Intron 0.44 TCGA-19-A60I-01 12 23687080 23687080 C T SOX5 3'UTR 0.46 TCGA-19-A60I-01 13 111944505 111944505 T C ARHGEF7 Silent p.A746A 0.62 TCGA-19-A60I-01 13 49033954 49033956 CAG - RB1 In_Frame_Del p.D697_R698delinsE 0.67 TCGA-19-A60I-01 15 22062438 22062438 T C POTEB Silent p.L392L 0.22 TCGA-19-A60I-01 15 31358283 31358283 G A TRPM1 Silent p.N279N 0.37 TCGA-19-A60I-01 16 67265386 67265386 G A FHOD1 Missense_Mutation p.R818C 0.06 deleterious(0) possibly_damaging(0.893) TCGA-19-A60I-01 17 38936042 38936042 G T KRT27 Missense_Mutation p.D252E 0.28 deleterious(0.02) possibly_damaging(0.757) TCGA-19-A60I-01 17 49270274 49270274 C T MBTD1 Missense_Mutation p.R520H 0.06 deleterious(0) probably_damaging(0.998) TCGA-19-A60I-01 17 64875104 64875104 C T CACNG5 Missense_Mutation p.R71C 0.37 tolerated(0.09) possibly_damaging(0.883) TCGA-19-A60I-01 18 21531653 21531653 G A LAMA3 Silent p.T3216T 0.31 TCGA-19-A60I-01 19 15065133 15065133 G A SLC1A6 Missense_Mutation p.T393M 0.28 deleterious(0) probably_damaging(0.998) TCGA-19-A60I-01 19 35801000 35801000 C T MAG Silent p.R485R 0.29 TCGA-19-A60I-01 19 40421261 40421261 G A FCGBP Missense_Mutation p.T887M 0.37 probably_damaging(0.993) TCGA-19-A60I-01 1 145542312 145542312 C T ITGA10 3'UTR 0.45 TCGA-19-A60I-01 1 152384648 152384648 G A CRNN Missense_Mutation p.T21M 0.52 tolerated(0.12) benign(0.148) TCGA-19-A60I-01 1 210415620 210415620 C T SERTAD4 Missense_Mutation p.R337W 0.50 deleterious(0) probably_damaging(0.998) TCGA-19-A60I-01 1 220193332 220193332 T C EPRS Silent p.G449G 0.51 TCGA-19-A60I-01 1 237001890 237001890 A G MTR Silent p.E502E 0.14 TCGA-19-A60I-01 20 32378959 32378959 G A ZNF341 Missense_Mutation p.G727D 0.50 tolerated(0.09) benign(0.22) TCGA-19-A60I-01 22 25024112 25024112 G A GGT1 Missense_Mutation p.M467I 0.81 deleterious(0.01) benign(0.285) TCGA-19-A60I-01 2 170097808 170097808 C T LRP2 Silent p.P1245P 0.57 TCGA-19-A60I-01 2 179721097 179721097 T C CCDC141 Missense_Mutation p.K918E 0.48 deleterious(0.02) probably_damaging(0.999) TCGA-19-A60I-01 2 179732784 179732784 C T CCDC141 Missense_Mutation p.G848E 0.07 deleterious(0) probably_damaging(1) TCGA-19-A60I-01 2 211301008 211301008 T C LANCL1 Missense_Mutation p.N328D 0.38 deleterious(0) probably_damaging(1) TCGA-19-A60I-01 2 31152266 31152266 G A GALNT14 Silent p.F387F 0.40 TCGA-19-A60I-01 3 138762945 138762945 C T PRR23C Missense_Mutation p.G173D 0.10 tolerated(0.19) possibly_damaging(0.783) TCGA-19-A60I-01 3 139108448 139108448 G C COPB2 5'UTR 0.45 TCGA-19-A60I-01 3 141497325 141497325 C T GRK7 Missense_Mutation p.R67C 0.44 deleterious(0) probably_damaging(0.977) TCGA-19-A60I-01 3 32932670 32932670 C T TRIM71 Silent p.G658G 0.08 TCGA-19-A60I-01 3 62503917 62503917 C T CADPS Missense_Mutation p.G767E 0.38 deleterious(0) probably_damaging(0.931) TCGA-19-A60I-01 5 35763628 35763628 C A SPEF2 Missense_Mutation p.P1209T 0.50 deleterious(0) probably_damaging(0.998) TCGA-19-A60I-01 6 35478685 35478685 C T TULP1 Missense_Mutation p.S151N 0.02 deleterious_low_confidence(0.01) benign(0.052) TCGA-19-A60I-01 6 35547851 35547851 G C FKBP5 Missense_Mutation p.L330V 0.02 tolerated(0.1) benign(0.02) TCGA-19-A60I-01 6 43041653 43041653 C T KLC4 Nonsense_Mutation p.R605* 0.33 TCGA-19-A60I-01 7 158457322 158457322 C T NCAPG2 Missense_Mutation p.E534K 0.26 tolerated(0.16) benign(0.199) TCGA-19-A60I-01 7 94230126 94230126 C T SGCE Missense_Mutation p.R290H 0.24 tolerated(0.54) benign(0.014) TCGA-19-A60I-01 9 32634602 32634602 C T TAF1L Missense_Mutation p.A326T 0.44 tolerated(0.11) benign(0.004) TCGA-19-A60I-01 X 65475997 65475997 C T HEPH Silent p.I961I 0.86 TCGA-19-A6J4-01 10 89312045 89312045 C G MINPP1 Missense_Mutation p.A425G 0.41 tolerated(0.68) benign(0.317) TCGA-19-A6J4-01 11 130060432 130060432 G A ST14 Missense_Mutation p.A240T 0.15 tolerated(0.06) benign(0.108) TCGA-19-A6J4-01 11 58979195 58979195 A G MPEG1 Missense_Mutation p.Y382H 0.25 deleterious(0) probably_damaging(0.956) TCGA-19-A6J4-01 11 64882806 64882806 C T TM7SF2 Missense_Mutation p.R305C 0.19 deleterious(0) probably_damaging(1) TCGA-19-A6J4-01 11 67267711 67267711 C T PITPNM1 Silent p.P274P 0.27 TCGA-19-A6J4-01 11 92881572 92881572 A - SLC36A4 3'UTR 0.23 TCGA-19-A6J4-01 12 51108366 51108366 G A DIP2B Silent p.R946R 0.07 TCGA-19-A6J4-01 12 53825045 53825045 C T AMHR2 Missense_Mutation p.R504C 0.41 deleterious(0) possibly_damaging(0.898) TCGA-19-A6J4-01 12 91348279 91348279 C T CCER1 Missense_Mutation p.V81M 0.53 tolerated(0.31) probably_damaging(0.938) TCGA-19-A6J4-01 16 21147718 21147718 G A DNAH3 Silent p.F271F 0.07 TCGA-19-A6J4-01 16 21702929 21702929 C T OTOA Silent p.Y220Y 0.24 TCGA-19-A6J4-01 16 88908356 88908356 G A GALNS Missense_Mutation p.R90W 0.26 deleterious(0) probably_damaging(1) TCGA-19-A6J4-01 16 89704669 89704669 C T DPEP1 3'UTR 0.29 TCGA-19-A6J4-01 17 33768710 33768710 G A SLFN13 Silent p.H598H 0.29 TCGA-19-A6J4-01 17 9631376 9631376 C G USP43 Missense_Mutation p.P814R 0.31 deleterious(0) probably_damaging(0.997) TCGA-19-A6J4-01 18 61569106 61569106 G A SERPINB2 Missense_Mutation p.R223H 0.16 tolerated(0.07) benign(0.08) TCGA-19-A6J4-01 18 61621687 61621687 C T HMSD Nonsense_Mutation p.R40* 0.14 TCGA-19-A6J4-01 18 67563153 67563153 G A CD226 Missense_Mutation p.R171C 0.17 deleterious(0.01) possibly_damaging(0.606) TCGA-19-A6J4-01 19 15567057 15567057 G T RASAL3 Missense_Mutation p.Q527K 0.27 tolerated(0.09) benign(0.257) TCGA-19-A6J4-01 19 6441995 6441995 C T SLC25A23 Silent p.T466T 0.13 TCGA-19-A6J4-01 1 111825255 111825255 T C CHIAP2 RNA 0.16 TCGA-19-A6J4-01 1 152283944 152283944 G A FLG Nonsense_Mutation p.R1140* 0.36 TCGA-19-A6J4-01 1 158605704 158605704 G A SPTA1 Nonsense_Mutation p.R1811* 0.16 TCGA-19-A6J4-01 1 185121001 185121001 T C TRMT1L Missense_Mutation p.N101S 0.13 tolerated_low_confidence(0.07) benign(0.014) TCGA-19-A6J4-01 1 204006256 204006256 G A LINC00303 Intron 0.29 TCGA-19-A6J4-01 1 21205856 21205856 A G EIF4G3 Missense_Mutation p.F811S 0.31 deleterious(0) probably_damaging(0.999) TCGA-19-A6J4-01 1 218520104 218520104 C T TGFB2 Silent p.L21L 0.26 TCGA-19-A6J4-01 1 248308792 248308792 T A OR2M5 Missense_Mutation p.L115M 0.12 deleterious(0) probably_damaging(0.986) TCGA-19-A6J4-01 1 38483331 38483331 G A UTP11L Intron 0.14 TCGA-19-A6J4-01 1 43647425 43647425 G A WDR65 Silent p.T126T 0.12 TCGA-19-A6J4-01 20 14665540 14665540 G A MACROD2 Missense_Mutation p.R118H 0.36 tolerated(0.09) probably_damaging(0.993) TCGA-19-A6J4-01 20 37001713 37001713 C T LBP Intron 0.30 TCGA-19-A6J4-01 21 32185530 32185530 G A KRTAP8-1 Silent p.C3C 0.28 TCGA-19-A6J4-01 22 19001966 19001966 C A DGCR9 5'Flank 0.07 TCGA-19-A6J4-01 2 233709246 233709246 G A GIGYF2 Silent p.R1110R 0.20 TCGA-19-A6J4-01 4 57677891 57677891 A G SPINK2 Missense_Mutation p.S57P 0.21 tolerated(0.25) possibly_damaging(0.88) TCGA-19-A6J4-01 4 91229518 91229518 C T CCSER1 Missense_Mutation p.S28F 0.39 deleterious(0) probably_damaging(0.999) TCGA-19-A6J4-01 6 128411000 128411000 C A PTPRK Missense_Mutation p.G434C 0.08 deleterious(0) benign(0.281) TCGA-19-A6J4-01 6 31513978 31513978 G A ATP6V1G2 Missense_Mutation p.R31W 0.19 deleterious(0) benign(0.013) TCGA-19-A6J4-01 6 7231931 7231931 C T RREB1 Missense_Mutation p.A1200V 0.17 deleterious(0.01) benign(0.3) TCGA-19-A6J4-01 7 56006709 56006709 C G ZNF713 Silent p.T101T 0.16 TCGA-19-A6J4-01 8 77776549 77776549 G A ZFHX4 Silent p.A3533A 0.17 TCGA-19-A6J4-01 Y 6948879 6948879 C A TBL1Y Silent p.T354T 0.42 TCGA-19-A6J5-01 10 89711965 89711965 T A PTEN Missense_Mutation p.F195I 0.90 tolerated(0.35) benign(0.017) TCGA-19-A6J5-01 11 114401357 114401357 T C NXPE1 5'UTR 0.41 TCGA-19-A6J5-01 11 130069925 130069925 G T ST14 Missense_Mutation p.Q629H 0.48 deleterious(0) probably_damaging(0.999) TCGA-19-A6J5-01 12 10007012 10007012 T C CLEC2B Silent p.G103G 0.53 TCGA-19-A6J5-01 12 46321365 46321365 T A SCAF11 Nonsense_Mutation p.K707* 0.45 TCGA-19-A6J5-01 14 106321871 106321871 G A IGHM Silent p.D121D 0.47 TCGA-19-A6J5-01 14 72939589 72939590 - A RGS6 Frame_Shift_Ins p.D185Rfs*10 0.34 TCGA-19-A6J5-01 14 73577635 73577635 C T RBM25 Nonsense_Mutation p.R597* 0.40 TCGA-19-A6J5-01 14 74531911 74531911 T A ALDH6A1 Missense_Mutation p.K459N 0.52 deleterious(0) probably_damaging(0.999) TCGA-19-A6J5-01 15 38233886 38233886 T G TMCO5A Nonsense_Mutation p.Y153* 0.36 TCGA-19-A6J5-01 15 41387849 41387849 C T INO80 Missense_Mutation p.G111R 0.29 tolerated(0.54) benign(0.107) TCGA-19-A6J5-01 15 43075832 43075832 T G TTBK2 Missense_Mutation p.I328L 0.39 deleterious(0.04) possibly_damaging(0.474) TCGA-19-A6J5-01 15 65917891 65917891 C T SLC24A1 Silent p.S491S 0.42 TCGA-19-A6J5-01 16 15818529 15818529 C T MYH11 Missense_Mutation p.R1371H 0.46 probably_damaging(1) TCGA-19-A6J5-01 16 67912677 67912677 C T EDC4 Missense_Mutation p.P408S 0.46 tolerated(0.07) probably_damaging(0.999) TCGA-19-A6J5-01 16 71317771 71317771 C A CMTR2 Missense_Mutation p.V685F 0.55 deleterious(0) possibly_damaging(0.526) TCGA-19-A6J5-01 16 87872348 87872348 C T SLC7A5 Missense_Mutation p.V339I 0.47 tolerated(0.2) probably_damaging(0.999) TCGA-19-A6J5-01 17 48273861 48273861 C G COL1A1 Missense_Mutation p.G296A 0.04 unknown(0) TCGA-19-A6J5-01 17 73832137 73832137 G A UNC13D Silent p.G500G 0.45 TCGA-19-A6J5-01 17 7578394 7578394 T C TP53 Missense_Mutation p.H179R 0.95 deleterious(0) probably_damaging(1) TCGA-19-A6J5-01 17 77808833 77808833 C T CBX4 Missense_Mutation p.G203E 0.50 tolerated(0.8) benign(0.048) TCGA-19-A6J5-01 18 14534948 14534948 A G POTEC Missense_Mutation p.F290S 0.11 deleterious(0) probably_damaging(0.976) TCGA-19-A6J5-01 18 22007917 22007917 G C IMPACT Missense_Mutation p.G24A 0.46 deleterious(0.04) possibly_damaging(0.902) TCGA-19-A6J5-01 18 44470855 44470855 G A PIAS2 Missense_Mutation p.R63C 0.49 deleterious(0) benign(0.12) TCGA-19-A6J5-01 19 11352799 11352799 G A DOCK6 Missense_Mutation p.P522L 0.50 deleterious(0) possibly_damaging(0.636) TCGA-19-A6J5-01 19 40382689 40382689 G A FCGBP Silent p.R3399R 0.19 TCGA-19-A6J5-01 19 44679156 44679156 T C ZNF226 Intron 0.86 TCGA-19-A6J5-01 19 50728931 50728931 A G MYH14 Silent p.R269R 0.29 TCGA-19-A6J5-01 19 8615147 8615147 C T MYO1F Missense_Mutation p.R333H 0.37 deleterious(0) probably_damaging(0.954) TCGA-19-A6J5-01 1 12815706 12815706 C A C1orf158 Silent p.P56P 0.93 TCGA-19-A6J5-01 20 13279750 13279750 C T ISM1 Missense_Mutation p.R347C 0.12 deleterious(0) probably_damaging(0.998) TCGA-19-A6J5-01 21 10863048 10863048 G T IGHV1OR21-1 Missense_Mutation p.C115F 0.27 deleterious(0) probably_damaging(0.992) TCGA-19-A6J5-01 2 169626039 169626039 G C CERS6 Missense_Mutation p.S349T 0.51 deleterious(0) probably_damaging(0.952) TCGA-19-A6J5-01 2 207173923 207173923 C T ZDBF2 Silent p.V1557V 0.64 TCGA-19-A6J5-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.54 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-19-A6J5-01 2 212652849 212652849 T C ERBB4 Missense_Mutation p.K153E 0.55 deleterious(0.05) benign(0.144) TCGA-19-A6J5-01 2 217279802 217279802 C T SMARCAL1 Silent p.P125P 0.50 TCGA-19-A6J5-01 2 219618899 219618899 C T TTLL4 Silent p.D1129D 0.42 TCGA-19-A6J5-01 2 62373588 62373588 G T AC018462.2 RNA 0.54 TCGA-19-A6J5-01 2 96799234 96799234 G A ASTL Missense_Mutation p.R129C 0.55 deleterious(0.01) possibly_damaging(0.893) TCGA-19-A6J5-01 2 98175444 98175444 T G ANKRD36B RNA 0.46 TCGA-19-A6J5-01 3 121209199 121209199 C T POLQ Missense_Mutation p.R860Q 0.47 tolerated(0.07) benign(0.059) TCGA-19-A6J5-01 3 183862481 183862481 C T EIF2B5 Missense_Mutation p.R698C 0.43 deleterious(0) probably_damaging(0.982) TCGA-19-A6J5-01 4 188924284 188924284 A G ZFP42 Missense_Mutation p.Q108R 0.81 tolerated(0.19) probably_damaging(0.994) TCGA-19-A6J5-01 4 78740460 78740489 CATTCTCTTCCTCTGGCCCAGAAGCAACAG - CNOT6L Intron 0.29 TCGA-19-A6J5-01 5 1034387 1034387 G A NKD2 Missense_Mutation p.R123H 0.59 tolerated(0.05) benign(0.035) TCGA-19-A6J5-01 5 34925523 34925523 T C BRIX1 Silent p.L329L 0.55 TCGA-19-A6J5-01 5 95152294 95152294 C T GLRX Missense_Mutation p.G82R 0.54 deleterious(0) possibly_damaging(0.802) TCGA-19-A6J5-01 6 117232110 117232110 C T RFX6 Missense_Mutation p.R229C 0.42 deleterious(0.01) probably_damaging(0.997) TCGA-19-A6J5-01 6 49665572 49665572 C T CRISP2 Splice_Site p.X172_splice 0.47 TCGA-19-A6J5-01 7 50611705 50611705 G A DDC Missense_Mutation p.R27C 0.28 deleterious(0.01) probably_damaging(1) TCGA-19-A6J5-01 7 72420562 72420562 T C POM121 3'UTR 0.22 TCGA-19-A6J5-01 7 813704 813704 G A HEATR2 Missense_Mutation p.E651K 0.56 tolerated(0.24) benign(0.016) TCGA-19-A6J5-01 9 100692714 100692714 A T HEMGN Silent p.P321P 0.27 TCGA-19-A6J5-01 9 139371371 139371371 G A SEC16A Missense_Mutation p.P233S 0.34 tolerated(0.05) possibly_damaging(0.773) TCGA-19-A6J5-01 9 6331155 6331155 G C TPD52L3 3'Flank 0.44 TCGA-19-A6J5-01 X 102974110 102974110 C T GLRA4 Missense_Mutation p.V270I 0.96 deleterious(0) possibly_damaging(0.757) TCGA-19-A6J5-01 X 76937880 76937880 T - ATRX Frame_Shift_Del p.V957Yfs*13 0.47 TCGA-26-1439-01 10 5254979 5254979 C A AKR1C4 Missense_Mutation p.L235I 0.31 deleterious(0.01) probably_damaging(1) TCGA-26-1439-01 11 121424742 121424742 G A SORL1 Missense_Mutation p.R788Q 0.44 tolerated(0.15) benign(0.336) TCGA-26-1439-01 11 66192484 66192484 C T NPAS4 Missense_Mutation p.T708M 0.39 tolerated(0.18) benign(0.001) TCGA-26-1439-01 11 67225127 67225127 C T CABP4 Nonsense_Mutation p.R209* 0.42 TCGA-26-1439-01 13 114294537 114294537 C T TFDP1 Silent p.D396D 0.49 TCGA-26-1439-01 15 52902145 52902145 A G FAM214A Silent p.G322G 0.11 TCGA-26-1439-01 15 90349552 90349552 G A ANPEP Missense_Mutation p.T88M 0.38 tolerated(0.08) benign(0.16) TCGA-26-1439-01 16 56865910 56865910 G A NUP93 Silent p.L414L 0.43 TCGA-26-1439-01 16 80718650 80718650 G A CDYL2 Missense_Mutation p.T134M 0.43 tolerated(0.11) benign(0.02) TCGA-26-1439-01 17 18833933 18833933 C T PRPSAP2 Silent p.I344I 0.03 TCGA-26-1439-01 17 28537542 28537542 G A SLC6A4 Silent p.T480T 0.32 TCGA-26-1439-01 17 28769323 28769323 T C CPD Intron 0.15 TCGA-26-1439-01 17 5418262 5418262 G A NLRP1 Nonsense_Mutation p.Q1412* 0.19 TCGA-26-1439-01 17 57288448 57288448 G A SMG8 Missense_Mutation p.D346N 0.12 deleterious(0.01) probably_damaging(0.986) TCGA-26-1439-01 17 67305454 67305454 G A ABCA5 Missense_Mutation p.R140C 0.16 deleterious(0) probably_damaging(0.991) TCGA-26-1439-01 17 73626864 73626864 C G RECQL5 Missense_Mutation p.V547L 0.18 deleterious(0.01) benign(0.348) TCGA-26-1439-01 17 73754163 73754163 C A GALK1 Missense_Mutation p.D385Y 0.23 deleterious(0.02) possibly_damaging(0.462) TCGA-26-1439-01 17 7708677 7708677 C T DNAH2 Silent p.N3136N 0.33 TCGA-26-1439-01 19 15852470 15852470 C T OR10H3 Missense_Mutation p.H90Y 0.31 tolerated(0.41) benign(0.004) TCGA-26-1439-01 19 17017835 17017835 G A CPAMD8 Silent p.Y1365Y 0.41 TCGA-26-1439-01 19 23406220 23406220 T C ZNF724P Missense_Mutation p.H276R 0.16 deleterious(0.01) possibly_damaging(0.748) TCGA-26-1439-01 19 40196612 40196612 G A LGALS14 Missense_Mutation p.R22H 0.32 tolerated_low_confidence(0.12) benign(0) TCGA-26-1439-01 19 43373123 43373123 A C PSG1 Nonsense_Mutation p.L258* 0.37 TCGA-26-1439-01 1 1120451 1120451 C T TTLL10 Missense_Mutation p.R455W 0.06 deleterious(0) probably_damaging(0.981) TCGA-26-1439-01 1 152081494 152081494 C T TCHH Missense_Mutation p.R1400H 0.33 unknown(0) TCGA-26-1439-01 1 161253488 161253488 C T PCP4L1 Nonsense_Mutation p.Q14* 0.27 TCGA-26-1439-01 1 169388142 169388142 C A CCDC181 Intron 0.08 TCGA-26-1439-01 1 183261948 183261948 G A NMNAT2 Silent p.A73A 0.05 TCGA-26-1439-01 1 213134685 213134685 C G VASH2 Intron 0.10 TCGA-26-1439-01 1 229772144 229772145 - AAA URB2 In_Frame_Ins p.P595_E596insK 0.49 TCGA-26-1439-01 20 13052931 13052931 G C SPTLC3 Missense_Mutation p.E111Q 0.39 deleterious(0.02) benign(0.082) TCGA-26-1439-01 21 46066487 46066487 G A KRTAP10-11 Missense_Mutation p.A38T 0.27 tolerated(0.26) unknown(0) TCGA-26-1439-01 22 37325775 37325775 G A CSF2RB Missense_Mutation p.R215H 0.43 tolerated(0.17) benign(0.028) TCGA-26-1439-01 22 37603101 37603101 G A SSTR3 Missense_Mutation p.R248W 0.45 deleterious(0) probably_damaging(0.993) TCGA-26-1439-01 2 24247038 24247038 G A MFSD2B Missense_Mutation p.A463T 0.35 deleterious(0.01) probably_damaging(0.975) TCGA-26-1439-01 2 71160172 71160172 G A VAX2 Silent p.A237A 0.22 TCGA-26-1439-01 2 72692422 72692422 T A EXOC6B Missense_Mutation p.Q616L 0.10 tolerated(0.3) benign(0.193) TCGA-26-1439-01 3 57132269 57132269 C T IL17RD Missense_Mutation p.V488I 0.21 tolerated(1) benign(0.007) TCGA-26-1439-01 4 155219800 155219800 C G DCHS2 Missense_Mutation p.R1434P 0.28 deleterious(0) probably_damaging(0.953) TCGA-26-1439-01 4 155242236 155242236 A G DCHS2 Silent p.L984L 0.40 TCGA-26-1439-01 4 84362553 84362553 C A HELQ Nonsense_Mutation p.E523* 0.31 TCGA-26-1439-01 5 135692416 135692416 G A TRPC7 Silent p.N220N 0.43 TCGA-26-1439-01 5 138209080 138209081 - T LRRTM2 Nonsense_Mutation p.Y390* 0.30 TCGA-26-1439-01 5 140229393 140229393 C T PCDHA9 Missense_Mutation p.T438M 0.42 deleterious_low_confidence(0.01) probably_damaging(0.947) TCGA-26-1439-01 5 41058241 41058241 C T MROH2B Missense_Mutation p.R227H 0.17 tolerated(0.4) benign(0.002) TCGA-26-1439-01 5 50679375 50679375 G A ISL1 5'UTR 0.40 TCGA-26-1439-01 5 66460510 66460510 G A MAST4 Missense_Mutation p.V1835M 0.41 benign(0.026) TCGA-26-1439-01 6 132781864 132781864 C T STX7 3'UTR 0.23 TCGA-26-1439-01 6 45390685 45390685 G A RUNX2 Silent p.V138V 0.08 TCGA-26-1439-01 7 100404060 100404060 C T EPHB4 Nonsense_Mutation p.W822* 0.29 TCGA-26-1439-01 7 113517748 113517748 A T PPP1R3A 3'UTR 0.12 TCGA-26-1439-01 7 53103950 53103950 T C POM121L12 Silent p.L196L 0.31 TCGA-26-1439-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.51 deleterious(0) possibly_damaging(0.75) TCGA-26-1439-01 7 87760639 87760639 C T ADAM22 Missense_Mutation p.A294V 0.28 deleterious(0.03) benign(0.416) TCGA-26-1439-01 8 120774701 120774701 T G TAF2 Missense_Mutation p.N838H 0.15 deleterious(0) possibly_damaging(0.893) TCGA-26-1439-01 8 142505515 142505515 T C MROH5 Missense_Mutation p.K76E 0.26 deleterious(0) probably_damaging(0.998) TCGA-26-1439-01 9 141014620 141014620 G A CACNA1B Missense_Mutation p.V2012I 0.46 tolerated(1) benign(0.002) TCGA-26-1439-01 9 977245 977245 A G DMRT3 Missense_Mutation p.S82G 0.43 tolerated(0.05) benign(0.106) TCGA-26-1439-01 X 68058542 68058542 C G EFNB1 Missense_Mutation p.R71G 0.08 tolerated(0.57) possibly_damaging(0.796) TCGA-26-1442-01 10 79581222 79581222 G A DLG5 Missense_Mutation p.A1007V 0.25 tolerated(0.28) benign(0) TCGA-26-1442-01 10 85972090 85972090 A G CDHR1 Missense_Mutation p.N570S 0.12 deleterious(0.01) probably_damaging(0.968) TCGA-26-1442-01 11 10673684 10673684 G A MRVI1 Missense_Mutation p.A38V 0.41 deleterious_low_confidence(0) benign(0.015) TCGA-26-1442-01 11 2434731 2434731 C T TRPM5 Missense_Mutation p.V660I 0.35 tolerated(1) benign(0.002) TCGA-26-1442-01 11 5602310 5602310 C A OR52B6 Silent p.V68V 0.12 TCGA-26-1442-01 11 5656037 5656037 G T TRIM34 Missense_Mutation p.E232D 0.10 tolerated(0.44) benign(0.033) TCGA-26-1442-01 11 60470903 60470903 C T MS4A8 Missense_Mutation p.A91V 0.38 tolerated(0.9) benign(0.01) TCGA-26-1442-01 11 63257740 63257740 C G HRASLS5 Missense_Mutation p.E82Q 0.03 tolerated_low_confidence(0.05) possibly_damaging(0.886) TCGA-26-1442-01 12 107372183 107372183 C T MTERFD3 Missense_Mutation p.A104T 0.11 deleterious(0.01) probably_damaging(0.972) TCGA-26-1442-01 12 124116941 124116941 T C EIF2B1 Silent p.S22S 0.05 TCGA-26-1442-01 12 130648643 130648643 G A FZD10 Missense_Mutation p.V386M 0.05 deleterious(0) probably_damaging(0.999) TCGA-26-1442-01 12 48529142 48529142 G A PFKM Silent p.T375T 0.34 TCGA-26-1442-01 12 53663316 53663316 G T ESPL1 Missense_Mutation p.R197L 0.17 deleterious(0.02) possibly_damaging(0.554) TCGA-26-1442-01 12 53804896 53804896 A T SP1 Missense_Mutation p.I744F 0.12 deleterious(0.01) possibly_damaging(0.507) TCGA-26-1442-01 12 56087909 56087909 T C ITGA7 Splice_Site p.X815_splice 0.11 TCGA-26-1442-01 13 31531137 31531137 C G TEX26 Missense_Mutation p.T147S 0.11 tolerated(0.2) probably_damaging(0.972) TCGA-26-1442-01 13 99378425 99378425 G A SLC15A1 Missense_Mutation p.T66M 0.15 tolerated(0.06) benign(0.189) TCGA-26-1442-01 14 21870120 21870120 G C CHD8 Missense_Mutation p.A1353G 0.15 deleterious(0) benign(0.217) TCGA-26-1442-01 14 24878580 24878580 G A NYNRIN Missense_Mutation p.G527E 0.08 tolerated_low_confidence(0.42) benign(0.007) TCGA-26-1442-01 14 52194629 52194629 G A FRMD6 Missense_Mutation p.C584Y 0.21 tolerated(0.24) benign(0.004) TCGA-26-1442-01 17 11696846 11696846 T C DNAH9 Silent p.C2696C 0.54 TCGA-26-1442-01 17 7577121 7577121 G A TP53 Missense_Mutation p.R273C 0.57 deleterious(0) probably_damaging(0.998) TCGA-26-1442-01 18 19321653 19321653 G C MIB1 Missense_Mutation p.G37R 0.17 deleterious(0) benign(0.17) TCGA-26-1442-01 18 67992496 67992496 A G SOCS6 Missense_Mutation p.N198D 0.14 tolerated_low_confidence(0.09) benign(0.001) TCGA-26-1442-01 19 14043504 14043504 T C PODNL1 3'UTR 0.10 TCGA-26-1442-01 19 17626983 17626983 C T PGLS Missense_Mutation p.T97M 0.39 tolerated(0.06) possibly_damaging(0.505) TCGA-26-1442-01 19 2444529 2444529 T C LMNB2 Missense_Mutation p.I92V 0.19 tolerated(0.08) benign(0.03) TCGA-26-1442-01 19 44778066 44778066 G A ZNF233 Missense_Mutation p.R418K 0.12 tolerated(0.21) benign(0.054) TCGA-26-1442-01 19 57328400 57328400 G A PEG3 Silent p.H470H 0.68 TCGA-26-1442-01 1 182920519 182920519 A T SHCBP1L Silent p.T163T 0.38 TCGA-26-1442-01 1 196887345 196887345 T C CFHR4 Missense_Mutation p.C515R 0.50 deleterious(0) probably_damaging(0.992) TCGA-26-1442-01 1 216348801 216348801 G C USH2A Missense_Mutation p.L1474V 0.14 benign(0.002) TCGA-26-1442-01 1 43778133 43778133 C T TIE1 Silent p.N596N 0.34 TCGA-26-1442-01 1 54605148 54605148 C T CDCP2 3'UTR 0.16 TCGA-26-1442-01 1 78478954 78478954 G C DNAJB4 Missense_Mutation p.R144T 0.08 tolerated(0.2) benign(0.005) TCGA-26-1442-01 20 44477248 44477248 C T ACOT8 Missense_Mutation p.R110H 0.17 deleterious(0) probably_damaging(1) TCGA-26-1442-01 2 149857246 149857246 G C KIF5C Missense_Mutation p.D775H 0.31 deleterious(0) possibly_damaging(0.868) TCGA-26-1442-01 2 198318368 198318368 G A COQ10B Silent p.Q28Q 0.29 TCGA-26-1442-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.46 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-26-1442-01 2 33036261 33036261 G C TTC27 Missense_Mutation p.Q723H 0.15 tolerated(0.21) benign(0.004) TCGA-26-1442-01 2 74684891 74684891 G A INO80B Missense_Mutation p.R324H 0.06 deleterious(0.03) benign(0.042) TCGA-26-1442-01 3 137799416 137799416 T C DZIP1L Silent p.P427P 0.49 TCGA-26-1442-01 3 141162963 141162963 A G ZBTB38 Missense_Mutation p.Y578C 0.11 deleterious(0) probably_damaging(0.999) TCGA-26-1442-01 3 47755965 47755965 G A SMARCC1 Silent p.V244V 0.11 TCGA-26-1442-01 3 52822082 52822082 G A ITIH1 Missense_Mutation p.V669M 0.18 deleterious(0) probably_damaging(0.965) TCGA-26-1442-01 4 189068016 189068016 C T TRIML1 Silent p.L299L 0.08 TCGA-26-1442-01 6 126210501 126210501 A T NCOA7 Missense_Mutation p.D434V 0.19 tolerated_low_confidence(0.07) benign(0.009) TCGA-26-1442-01 6 26107726 26107726 T A HIST1H1T Missense_Mutation p.N199I 0.07 deleterious(0) possibly_damaging(0.601) TCGA-26-1442-01 7 114271676 114271676 C A FOXP2 Missense_Mutation p.Q256K 0.18 tolerated(0.13) unknown(0) TCGA-26-1442-01 7 44747273 44747273 A G OGDH Silent p.Q963Q 0.06 TCGA-26-1442-01 7 5354614 5354614 C A TNRC18 Splice_Site p.X2343_splice 0.43 TCGA-26-1442-01 8 37611537 37611537 T C ERLIN2 Silent p.S308S 0.10 TCGA-26-1442-01 8 98863639 98863639 G A LAPTM4B Silent p.P297P 0.08 TCGA-26-1442-01 9 130630690 130630691 - T AK1 Frame_Shift_Ins p.N142Kfs*2 0.36 TCGA-26-1442-01 9 90499950 90499950 A G SPATA31E1 Missense_Mutation p.D183G 0.11 tolerated(0.05) possibly_damaging(0.549) TCGA-26-1442-01 X 53223866 53223866 G A KDM5C Missense_Mutation p.R1165C 0.40 deleterious(0) probably_damaging(0.915) TCGA-26-1442-01 Y 2709639 2709639 G T RPS4Y1 5'UTR 0.42 TCGA-26-5132-01 10 89720650 89720650 G A PTEN Splice_Site p.X268_splice 0.76 TCGA-26-5132-01 11 124489386 124489386 A G PANX3 Missense_Mutation p.K245R 0.38 tolerated(0.58) probably_damaging(0.996) TCGA-26-5132-01 11 21596532 21596532 T C NELL1 Silent p.C799C 0.37 TCGA-26-5132-01 11 21596615 21596615 C G NELL1 3'UTR 0.36 TCGA-26-5132-01 11 55587476 55587476 T C OR5D18 Missense_Mutation p.F124S 0.42 deleterious(0.01) benign(0.072) TCGA-26-5132-01 12 112327921 112327921 G A MAPKAPK5 Missense_Mutation p.D434N 0.17 tolerated(0.07) benign(0.201) TCGA-26-5132-01 12 117013714 117013714 G A MAP1LC3B2 5'UTR 0.39 TCGA-26-5132-01 12 118841310 118841310 A G SUDS3 Missense_Mutation p.Y264C 0.46 deleterious(0) possibly_damaging(0.541) TCGA-26-5132-01 12 21995285 21995285 A T ABCC9 Missense_Mutation p.F1146I 0.62 tolerated(0.08) possibly_damaging(0.578) TCGA-26-5132-01 12 26808744 26808744 C T ITPR2 Missense_Mutation p.R829K 0.09 tolerated(0.73) benign(0.001) TCGA-26-5132-01 12 43771195 43771195 G C ADAMTS20 Silent p.A1656A 0.77 TCGA-26-5132-01 12 9907050 9907050 C T CD69 Intron 0.71 TCGA-26-5132-01 13 48953730 48953730 C T RB1 Nonsense_Mutation p.R445* 0.72 TCGA-26-5132-01 14 21465078 21465078 A G METTL17 3'UTR 0.47 TCGA-26-5132-01 14 38016195 38016195 C A MIPOL1 3'UTR 0.41 TCGA-26-5132-01 14 70497081 70497081 T C SMOC1 3'UTR 0.53 TCGA-26-5132-01 15 22709699 22709699 T A AC116165.1 5'Flank 0.24 TCGA-26-5132-01 15 39874516 39874516 G A THBS1 Missense_Mutation p.A64T 0.33 tolerated_low_confidence(0.28) benign(0.282) TCGA-26-5132-01 15 43022940 43022940 C T CDAN1 Missense_Mutation p.R677Q 0.52 tolerated(0.29) benign(0.003) TCGA-26-5132-01 16 22563712 22563712 A T RP11-368J21.3 RNA 0.17 TCGA-26-5132-01 16 57946891 57946891 G T CNGB1 Missense_Mutation p.A771D 0.04 deleterious(0) benign(0.397) TCGA-26-5132-01 16 87448889 87448889 G T ZCCHC14 Missense_Mutation p.L353M 0.43 deleterious(0.05) probably_damaging(1) TCGA-26-5132-01 17 1577829 1577829 T C PRPF8 Missense_Mutation p.N1069S 0.42 deleterious(0.01) probably_damaging(0.96) TCGA-26-5132-01 17 19644516 19644516 C T ALDH3A1 Missense_Mutation p.A233T 0.49 tolerated(0.86) benign(0.082) TCGA-26-5132-01 17 39724628 39724628 G A KRT9 Silent p.L394L 0.43 TCGA-26-5132-01 19 33464993 33464993 G A C19orf40 Missense_Mutation p.V91I 0.51 tolerated(0.07) probably_damaging(0.988) TCGA-26-5132-01 1 147230552 147230552 G A GJA5 Silent p.P265P 0.36 TCGA-26-5132-01 1 150318611 150318611 G A PRPF3 Silent p.G586G 0.33 TCGA-26-5132-01 1 15873341 15873341 C T DNAJC16 Missense_Mutation p.T280M 0.05 tolerated(0.46) benign(0) TCGA-26-5132-01 1 190234152 190234152 C T BRINP3 Missense_Mutation p.R154Q 0.38 tolerated(0.21) benign(0.009) TCGA-26-5132-01 1 235922440 235922440 C T LYST Missense_Mutation p.R2238Q 0.05 tolerated_low_confidence(0.14) benign(0.003) TCGA-26-5132-01 1 39907987 39907987 C T MACF1 Nonsense_Mutation p.R4256* 0.39 TCGA-26-5132-01 1 41284177 41284177 A G KCNQ4 Missense_Mutation p.D178G 0.38 tolerated(0.07) benign(0.198) TCGA-26-5132-01 1 59141202 59141202 C T MYSM1 Missense_Mutation p.D481N 0.33 deleterious(0.05) benign(0.003) TCGA-26-5132-01 20 23065459 23065459 G A CD93 Silent p.G457G 0.36 TCGA-26-5132-01 20 39704846 39704848 AGG - TOP1 In_Frame_Del p.E65del 0.40 TCGA-26-5132-01 20 61598555 61598555 C T SLC17A9 Intron 0.46 TCGA-26-5132-01 20 62221345 62221345 C T GMEB2 3'UTR 0.43 TCGA-26-5132-01 2 167328840 167328840 C T SCN7A Missense_Mutation p.V187I 0.50 tolerated(0.14) benign(0.06) TCGA-26-5132-01 2 73493658 73493658 G A FBXO41 Missense_Mutation p.T353M 0.27 tolerated(0.07) possibly_damaging(0.855) TCGA-26-5132-01 3 100174867 100174867 G T LNP1 3'UTR 0.06 TCGA-26-5132-01 3 125647416 125647416 C T ALG1L 3'Flank 0.39 TCGA-26-5132-01 3 133653573 133653573 G A SLCO2A1 Missense_Mutation p.A639V 0.05 deleterious(0.04) benign(0.344) TCGA-26-5132-01 3 180705861 180705861 T C DNAJC19 Missense_Mutation p.K27E 0.43 tolerated(0.06) possibly_damaging(0.591) TCGA-26-5132-01 3 59737855 59737855 G T FHIT 3'UTR 0.09 TCGA-26-5132-01 4 155219629 155219629 G T DCHS2 Missense_Mutation p.A1491D 0.38 deleterious(0.02) possibly_damaging(0.776) TCGA-26-5132-01 4 25014080 25014080 C T LGI2 Missense_Mutation p.V233M 0.37 deleterious(0) possibly_damaging(0.886) TCGA-26-5132-01 5 1214110 1214110 G A SLC6A19 Missense_Mutation p.A273T 0.50 tolerated(1) benign(0.262) TCGA-26-5132-01 5 33576573 33576573 G A ADAMTS12 Silent p.D1186D 0.39 TCGA-26-5132-01 6 114264560 114264563 CTTT - HDAC2 Frame_Shift_Del p.K444Lfs*61 0.49 TCGA-26-5132-01 6 126080793 126080793 C T HEY2 Missense_Mutation p.P287S 0.36 tolerated(0.24) possibly_damaging(0.87) TCGA-26-5132-01 6 26247188 26247188 C T HIST1H4G Silent p.K6K 0.33 TCGA-26-5132-01 6 29641134 29641134 C T ZFP57 Missense_Mutation p.V252I 0.05 deleterious(0.02) benign(0.433) TCGA-26-5132-01 6 54254759 54254759 G A TINAG 3'UTR 0.36 TCGA-26-5132-01 7 149431067 149431067 A T KRBA1 Silent p.G1007G 0.29 TCGA-26-5132-01 7 27185435 27185435 G A HOXA6 Missense_Mutation p.R182W 0.32 deleterious(0) probably_damaging(0.993) TCGA-26-5132-01 7 92985271 92985271 T C CCDC132 Missense_Mutation p.L885S 0.27 deleterious(0.01) probably_damaging(0.922) TCGA-26-5132-01 7 99474406 99474406 T C OR2AE1 Missense_Mutation p.N84S 0.28 tolerated(0.06) benign(0.043) TCGA-26-5132-01 8 41519452 41519452 C T ANK1 Missense_Mutation p.R1870H 0.35 deleterious_low_confidence(0) possibly_damaging(0.828) TCGA-26-5132-01 9 135470499 135470500 CC - DDX31 Splice_Site p.X770_splice 0.33 TCGA-26-5132-01 9 86917142 86917142 A G SLC28A3 Missense_Mutation p.L166P 0.41 deleterious(0) probably_damaging(0.954) TCGA-26-5132-01 9 88627995 88627995 A T NAA35 Missense_Mutation p.N442I 0.28 deleterious(0) probably_damaging(0.999) TCGA-26-5132-01 X 151870122 151870122 T A MAGEA6 Missense_Mutation p.F271Y 0.14 deleterious(0.03) probably_damaging(0.996) TCGA-26-5132-01 X 27998785 27998785 A G DCAF8L1 Missense_Mutation p.W223R 0.84 deleterious(0) probably_damaging(0.998) TCGA-26-5132-01 X 34962914 34962914 G T FAM47B 3'UTR 0.85 TCGA-26-5132-01 X 68749803 68749803 T C FAM155B 3'UTR 0.83 TCGA-26-5132-01 X 70341430 70341430 C T MED12 Nonsense_Mutation p.Q289* 0.24 TCGA-26-5133-01 10 55591167 55591167 T C PCDH15 Silent p.L1370L 0.16 TCGA-26-5133-01 11 63381479 63381479 G A PLA2G16 Missense_Mutation p.A3V 0.05 deleterious_low_confidence(0.04) benign(0.052) TCGA-26-5133-01 12 45823037 45823037 G A ANO6 Silent p.V913V 0.09 TCGA-26-5133-01 12 57490672 57490672 C T STAT6 Missense_Mutation p.C772Y 0.09 tolerated_low_confidence(0.37) possibly_damaging(0.646) TCGA-26-5133-01 12 76791554 76791554 T C OSBPL8 Missense_Mutation p.I198V 0.06 tolerated(0.28) benign(0.06) TCGA-26-5133-01 14 106573243 106573243 T C IGHV3-11 Missense_Mutation p.Y114C 0.81 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-26-5133-01 14 20666093 20666093 A G OR11G2 Missense_Mutation p.N200S 0.12 deleterious(0.01) benign(0) TCGA-26-5133-01 14 21269736 21269736 G T RNASE1 3'UTR 0.15 TCGA-26-5133-01 14 64936331 64936331 T C AKAP5 Missense_Mutation p.S407P 0.11 deleterious(0) probably_damaging(0.997) TCGA-26-5133-01 14 65550827 65550827 T G MAX Intron 0.10 TCGA-26-5133-01 14 73989140 73989140 C A HEATR4 Missense_Mutation p.Q239H 0.10 tolerated(0.21) benign(0.022) TCGA-26-5133-01 14 74974771 74974771 G A LTBP2 Missense_Mutation p.P1227L 0.69 tolerated(0.78) benign(0.01) TCGA-26-5133-01 15 50190419 50190419 A T ATP8B4 Missense_Mutation p.N773K 0.45 tolerated(0.98) benign(0.006) TCGA-26-5133-01 15 81213426 81213426 C T KIAA1199 Missense_Mutation p.A686V 0.05 deleterious(0.04) possibly_damaging(0.574) TCGA-26-5133-01 16 15690712 15690712 C T KIAA0430 Silent p.S1689S 0.05 TCGA-26-5133-01 16 727863 727863 G A RHBDL1 Silent p.A376A 0.17 TCGA-26-5133-01 16 89940047 89940047 C T TCF25 5'UTR 0.68 TCGA-26-5133-01 17 29667528 29667528 G - NF1 Frame_Shift_Del p.P2310Lfs*9 0.44 TCGA-26-5133-01 17 53471726 53471726 C T MMD Missense_Mutation p.R229Q 0.04 tolerated(0.6) benign(0.001) TCGA-26-5133-01 17 61611547 61611547 A G KCNH6 Missense_Mutation p.T326A 0.03 tolerated(0.79) benign(0.001) TCGA-26-5133-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.84 deleterious(0) probably_damaging(0.992) TCGA-26-5133-01 19 39915859 39915859 T G PLEKHG2 Silent p.A1362A 0.09 TCGA-26-5133-01 19 42354555 42354555 C T DMRTC2 Intron 0.05 TCGA-26-5133-01 19 56423467 56423467 G A NLRP13 Silent p.H572H 0.06 TCGA-26-5133-01 1 201021762 201021762 G A CACNA1S Silent p.I1292I 0.06 TCGA-26-5133-01 1 228362831 228362831 G A IBA57 Missense_Mutation p.E230K 0.87 deleterious(0) probably_damaging(0.999) TCGA-26-5133-01 1 45797465 45797465 T A MUTYH Missense_Mutation p.T349S 0.43 tolerated(1) benign(0) TCGA-26-5133-01 2 11750922 11750922 G A GREB1 Silent p.S925S 0.53 TCGA-26-5133-01 2 153399316 153399316 C T FMNL2 Missense_Mutation p.P89S 0.32 benign(0.113) TCGA-26-5133-01 2 211476895 211476895 T C CPS1 Missense_Mutation p.C822R 0.03 deleterious(0) possibly_damaging(0.88) TCGA-26-5133-01 2 21225763 21225763 T C APOB Silent p.R4177R 0.36 TCGA-26-5133-01 2 241831024 241831024 G A C2orf54 Missense_Mutation p.P224L 0.04 deleterious(0.01) probably_damaging(0.938) TCGA-26-5133-01 2 669581 669581 C T TMEM18 Silent p.%3D 0.58 TCGA-26-5133-01 3 142731118 142731118 A G U2SURP Missense_Mutation p.S49G 0.46 tolerated_low_confidence(0.27) benign(0.004) TCGA-26-5133-01 3 167034878 167034878 A T ZBBX Missense_Mutation p.V370E 0.08 tolerated(0.09) possibly_damaging(0.898) TCGA-26-5133-01 3 39307958 39307958 C T CX3CR1 Missense_Mutation p.D47N 0.29 tolerated(0.1) possibly_damaging(0.894) TCGA-26-5133-01 3 52442518 52442518 A G BAP1 Missense_Mutation p.I76T 0.19 tolerated(0.12) possibly_damaging(0.524) TCGA-26-5133-01 3 63898472 63898472 C T ATXN7 Silent p.G66G 0.53 TCGA-26-5133-01 4 159603468 159603468 T C ETFDH Silent p.R99R 0.06 TCGA-26-5133-01 4 6865692 6865692 C T KIAA0232 Nonsense_Mutation p.Q1195* 0.47 TCGA-26-5133-01 4 76842123 76842123 G C NAAA Missense_Mutation p.L274V 0.38 deleterious(0) probably_damaging(0.986) TCGA-26-5133-01 5 140729895 140729896 TC - PCDHGB1 Frame_Shift_Del p.F23Lfs*44 0.57 TCGA-26-5133-01 6 32260945 32260945 T A C6orf10 Missense_Mutation p.E502V 0.47 deleterious(0.03) probably_damaging(0.991) TCGA-26-5133-01 6 32903319 32903319 G A HLA-DMB Missense_Mutation p.H245Y 0.36 tolerated(1) benign(0.004) TCGA-26-5133-01 6 34004117 34004117 C T GRM4 Silent p.L590L 0.26 TCGA-26-5133-01 6 52149470 52149470 C G MCM3 Missense_Mutation p.M46I 0.29 tolerated(0.11) unknown(0) TCGA-26-5133-01 7 50450397 50450397 C T IKZF1 Missense_Mutation p.T194M 0.13 deleterious(0) probably_damaging(1) TCGA-26-5133-01 7 99711354 99711354 G A TAF6 Silent p.F131F 0.06 TCGA-26-5133-01 8 121644863 121644863 T C SNTB1 Missense_Mutation p.K273E 0.46 deleterious(0.01) benign(0.039) TCGA-26-5133-01 8 24251623 24251623 C A ADAMDEC1 Missense_Mutation p.P109H 0.06 tolerated(0.06) probably_damaging(0.984) TCGA-26-5133-01 9 130507361 130507361 C T SH2D3C Missense_Mutation p.A428T 0.42 tolerated(0.64) benign(0.001) TCGA-26-5133-01 X 109922648 109922648 G C CHRDL1 Missense_Mutation p.L388V 0.05 deleterious(0.02) probably_damaging(0.996) TCGA-26-5133-01 X 1719770 1719770 C T AKAP17A Silent p.G457G 0.36 TCGA-26-5133-01 X 71522708 71522708 C T CITED1 Silent p.T30T 0.19 TCGA-26-5134-01 10 96099659 96099659 A G NOC3L Missense_Mutation p.V600A 0.90 tolerated(0.22) benign(0.032) TCGA-26-5134-01 11 123777373 123777373 C A OR8D4 Missense_Mutation p.P79T 0.45 deleterious(0) probably_damaging(0.999) TCGA-26-5134-01 11 124618351 124618351 G A VSIG2 Silent p.C262C 0.42 TCGA-26-5134-01 11 55111268 55111268 G T OR4A16 Missense_Mutation p.V198F 0.43 deleterious_low_confidence(0.01) benign(0.248) TCGA-26-5134-01 11 55703585 55703585 C A OR5I1 Missense_Mutation p.G98W 0.41 deleterious(0) probably_damaging(0.982) TCGA-26-5134-01 11 64876151 64876151 C T VPS51 Missense_Mutation p.A403V 0.55 tolerated(0.1) possibly_damaging(0.672) TCGA-26-5134-01 11 75316804 75316804 G A MAP6 Intron 0.40 TCGA-26-5134-01 12 122672375 122672375 C T LRRC43 Missense_Mutation p.T217I 0.36 deleterious(0) probably_damaging(0.943) TCGA-26-5134-01 12 46357935 46357935 C T SCAF11 Missense_Mutation p.V6I 0.32 tolerated(0.23) benign(0.003) TCGA-26-5134-01 12 7527492 7527492 C A CD163L1 Missense_Mutation p.C1010F 0.34 deleterious(0) probably_damaging(0.95) TCGA-26-5134-01 13 35685025 35685025 G C NBEA Missense_Mutation p.G638R 0.39 deleterious(0) probably_damaging(0.998) TCGA-26-5134-01 14 20344857 20344857 T C OR4K2 Missense_Mutation p.L144P 0.38 deleterious(0) probably_damaging(0.986) TCGA-26-5134-01 14 71540387 71540387 C T PCNX Nonsense_Mutation p.R1660* 0.80 TCGA-26-5134-01 14 89168805 89168805 G A EML5 Silent p.Y741Y 0.84 TCGA-26-5134-01 15 69324094 69324094 G T NOX5 Nonsense_Mutation p.E188* 0.12 TCGA-26-5134-01 16 50263117 50263117 C G PAPD5 Missense_Mutation p.Q659E 0.55 tolerated_low_confidence(0.87) benign(0.008) TCGA-26-5134-01 16 57494685 57494685 C G COQ9 3'UTR 0.18 TCGA-26-5134-01 16 67425086 67425086 T C TPPP3 5'UTR 0.52 TCGA-26-5134-01 17 1419767 1419767 C G INPP5K Silent p.P9P 0.46 TCGA-26-5134-01 17 27233967 27233967 T C PHF12 Missense_Mutation p.T863A 0.45 tolerated(0.05) possibly_damaging(0.473) TCGA-26-5134-01 17 34263756 34263756 C T LYZL6 Intron 0.58 TCGA-26-5134-01 18 29052357 29052357 G A DSG3 Missense_Mutation p.G670R 0.42 tolerated(0.3) possibly_damaging(0.856) TCGA-26-5134-01 18 40695494 40695494 G A RIT2 5'UTR 0.46 TCGA-26-5134-01 19 10463654 10463654 C T TYK2 Missense_Mutation p.E1050K 0.37 deleterious(0.04) possibly_damaging(0.594) TCGA-26-5134-01 19 38103690 38103690 C T ZNF540 Silent p.T503T 0.38 TCGA-26-5134-01 19 51728575 51728575 A T CD33 Missense_Mutation p.I47L 0.42 tolerated(0.49) benign(0.001) TCGA-26-5134-01 1 24123528 24123528 G A GALE Missense_Mutation p.S213F 0.39 deleterious(0) probably_damaging(0.997) TCGA-26-5134-01 1 40431623 40431623 T C MFSD2A Silent p.N230N 0.35 TCGA-26-5134-01 1 47583502 47583502 C T CYP4Z1 Missense_Mutation p.R472C 0.45 deleterious(0.04) probably_damaging(0.965) TCGA-26-5134-01 20 2819125 2819125 C - PCED1A Splice_Site p.X199_splice 0.45 TCGA-26-5134-01 20 54974411 54974411 C T CSTF1 Missense_Mutation p.T345M 0.43 deleterious(0) probably_damaging(0.945) TCGA-26-5134-01 21 18933791 18933791 T C CXADR Missense_Mutation p.I277T 0.42 deleterious(0.01) probably_damaging(0.971) TCGA-26-5134-01 2 11332301 11332301 C T ROCK2 Missense_Mutation p.S1379N 0.39 tolerated(0.06) possibly_damaging(0.563) TCGA-26-5134-01 2 175432647 175432647 A C WIPF1 Silent p.P428P 0.43 TCGA-26-5134-01 2 24526701 24526701 G A ITSN2 Missense_Mutation p.S275L 0.42 deleterious(0) probably_damaging(0.999) TCGA-26-5134-01 2 37376027 37376027 C T EIF2AK2 5'UTR 0.53 TCGA-26-5134-01 2 71577393 71577393 C A ZNF638 Missense_Mutation p.H437N 0.43 deleterious(0) possibly_damaging(0.787) TCGA-26-5134-01 2 89100728 89100728 G A ANKRD36BP2 RNA 0.24 TCGA-26-5134-01 2 89266068 89266068 A G IGKV1-6 Missense_Mutation p.C22R 0.48 tolerated(0.06) benign(0.061) TCGA-26-5134-01 2 96781837 96781837 C T ADRA2B Missense_Mutation p.A18T 0.50 deleterious(0.04) benign(0.007) TCGA-26-5134-01 3 168810761 168810761 C T MECOM Missense_Mutation p.R927K 0.42 tolerated(0.27) benign(0.133) TCGA-26-5134-01 3 169656173 169656173 A G SAMD7 Missense_Mutation p.D407G 0.41 tolerated(0.11) benign(0.009) TCGA-26-5134-01 3 44540585 44540585 G C ZNF852 3'UTR 0.39 TCGA-26-5134-01 3 44882590 44882590 C G KIF15 Missense_Mutation p.Q1149E 0.40 tolerated(0.8) benign(0.137) TCGA-26-5134-01 3 47147485 47147485 A G SETD2 Splice_Site p.X1613_splice 0.38 TCGA-26-5134-01 3 48641675 48641675 T C UQCRC1 Missense_Mutation p.E206G 0.40 deleterious(0.02) benign(0) TCGA-26-5134-01 4 100205753 100205753 G T ADH1A Missense_Mutation p.L124M 0.38 tolerated(1) benign(0.065) TCGA-26-5134-01 4 108535263 108535263 C G PAPSS1 3'UTR 0.31 TCGA-26-5134-01 4 145032367 145032367 T - GYPA 3'UTR 0.44 TCGA-26-5134-01 4 148589774 148589774 C A PRMT10 Missense_Mutation p.C290F 0.38 tolerated(0.71) benign(0.001) TCGA-26-5134-01 4 155508053 155508053 C G FGA Missense_Mutation p.K176N 0.42 deleterious(0) probably_damaging(0.924) TCGA-26-5134-01 4 55133888 55133899 GGAAAAGATTCA - PDGFRA In_Frame_Del p.K369_E372del 0.73 TCGA-26-5134-01 4 71509712 71509712 C A ENAM Missense_Mutation p.P857T 0.36 deleterious(0) probably_damaging(0.923) TCGA-26-5134-01 4 87728883 87728883 G A PTPN13 Missense_Mutation p.A2311T 0.38 deleterious(0) probably_damaging(0.999) TCGA-26-5134-01 5 140215867 140215867 G A PCDHA7 Silent p.T633T 0.45 TCGA-26-5134-01 6 151281413 151281413 G A MTHFD1L Silent p.A602A 0.36 TCGA-26-5134-01 6 30131441 30131441 C T TRIM15 5'UTR 0.31 TCGA-26-5134-01 6 31778907 31778907 C A HSPA1L Missense_Mutation p.Q281H 0.44 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-26-5134-01 6 51484145 51484145 G C PKHD1 Missense_Mutation p.P3987A 0.34 tolerated_low_confidence(0.37) benign(0.004) TCGA-26-5134-01 7 100841600 100841600 C T MOGAT3 Silent p.Q180Q 0.45 TCGA-26-5134-01 7 72662607 72662607 C T GTF2IRD2P1 Intron 0.35 TCGA-26-5134-01 7 82785272 82785272 G T PCLO Missense_Mutation p.P229T 0.47 unknown(0) TCGA-26-5134-01 8 36661576 36661576 C G KCNU1 Missense_Mutation p.S116C 0.50 deleterious(0) probably_damaging(0.987) TCGA-26-5134-01 8 82714627 82714627 T A SNX16 Missense_Mutation p.D309V 0.38 deleterious_low_confidence(0.02) benign(0.273) TCGA-26-5134-01 9 32635178 32635178 A G TAF1L Missense_Mutation p.Y134H 0.35 tolerated_low_confidence(0.3) benign(0.066) TCGA-26-5134-01 9 35090223 35090223 C T PIGO Missense_Mutation p.R970Q 0.36 tolerated(0.29) benign(0.006) TCGA-26-5134-01 X 56259720 56259720 G T KLF8 5'UTR 0.07 TCGA-26-5135-01 10 29751331 29751331 C T SVIL Splice_Site p.X2093_splice 0.59 TCGA-26-5135-01 11 1250506 1250506 C T MUC5B Silent p.D361D 0.30 TCGA-26-5135-01 11 60229779 60229779 T A MS4A1 5'UTR 0.35 TCGA-26-5135-01 11 76372308 76372308 G A LRRC32 Missense_Mutation p.A110V 0.34 tolerated(0.5) benign(0.17) TCGA-26-5135-01 12 14650695 14650695 G A ATF7IP Silent p.K1167K 0.38 TCGA-26-5135-01 12 20769164 20769164 C T PDE3A Missense_Mutation p.R424C 0.36 deleterious(0.03) probably_damaging(1) TCGA-26-5135-01 12 6647098 6647098 T G GAPDH Missense_Mutation p.S292A 0.34 deleterious_low_confidence(0.02) benign(0.44) TCGA-26-5135-01 13 107187289 107187289 C A EFNB2 Silent p.V8V 0.38 TCGA-26-5135-01 14 106306807 106306807 C T IGHD Missense_Mutation p.R341H 0.44 tolerated(0.11) probably_damaging(0.988) TCGA-26-5135-01 14 106329444 106329444 C T IGHJ6 Missense_Mutation p.V9I 0.36 benign(0.002) TCGA-26-5135-01 14 25043934 25043934 G T CTSG Missense_Mutation p.R96S 0.41 tolerated(0.05) possibly_damaging(0.62) TCGA-26-5135-01 14 42356801 42356801 G T LRFN5 Missense_Mutation p.G325W 0.38 deleterious(0) probably_damaging(0.998) TCGA-26-5135-01 14 89647054 89647054 G A FOXN3 Missense_Mutation p.A303V 0.47 tolerated(0.24) benign(0.007) TCGA-26-5135-01 15 40758215 40758215 C T BAHD1 Silent p.D743D 0.46 TCGA-26-5135-01 16 3119233 3119233 C T IL32 Silent p.F148F 0.36 TCGA-26-5135-01 16 75564025 75564025 G A CHST5 Silent p.P86P 0.46 TCGA-26-5135-01 17 27010834 27010834 G A SUPT6H Silent p.K743K 0.46 TCGA-26-5135-01 18 28968937 28968937 C T DSG4 Missense_Mutation p.S158L 0.42 deleterious(0) benign(0.176) TCGA-26-5135-01 19 17945947 17945947 C T JAK3 Silent p.P664P 0.44 TCGA-26-5135-01 19 2918067 2918067 A G ZNF57 Missense_Mutation p.K483R 0.43 deleterious(0) probably_damaging(0.992) TCGA-26-5135-01 19 35837570 35837570 A C CD22 Missense_Mutation p.E838D 0.28 tolerated(0.09) benign(0.253) TCGA-26-5135-01 19 38572329 38572329 C T SIPA1L3 Nonsense_Mutation p.Q42* 0.32 TCGA-26-5135-01 19 44891167 44891167 C T ZNF285 Missense_Mutation p.V414I 0.41 tolerated(0.41) benign(0.061) TCGA-26-5135-01 19 45821144 45821144 C T CKM Missense_Mutation p.R96H 0.41 deleterious(0.04) possibly_damaging(0.728) TCGA-26-5135-01 19 57765629 57765629 A C ZNF805 Missense_Mutation p.K481T 0.32 deleterious(0.01) probably_damaging(1) TCGA-26-5135-01 19 9062081 9062081 G C MUC16 Silent p.S8455S 0.34 TCGA-26-5135-01 19 9921682 9921682 C T FBXL12 Missense_Mutation p.G291R 0.46 tolerated(0.08) probably_damaging(0.98) TCGA-26-5135-01 1 111061339 111061339 T A KCNA10 Missense_Mutation p.E24V 0.39 tolerated_low_confidence(0.05) benign(0.19) TCGA-26-5135-01 1 114969900 114969900 C T TRIM33 Missense_Mutation p.R440H 0.39 tolerated(0.32) benign(0.022) TCGA-26-5135-01 1 153927550 153927550 G A CRTC2 Silent p.A82A 0.29 TCGA-26-5135-01 1 155791284 155791284 G A GON4L Missense_Mutation p.T315M 0.34 deleterious(0) possibly_damaging(0.897) TCGA-26-5135-01 1 158609712 158609712 C T SPTA1 Missense_Mutation p.R1608H 0.40 deleterious(0.01) probably_damaging(1) TCGA-26-5135-01 1 167096396 167096396 G A DUSP27 Silent p.T676T 0.35 TCGA-26-5135-01 1 179064450 179064450 G A TOR3A 3'UTR 0.38 TCGA-26-5135-01 1 225590938 225590938 T C LBR 3'UTR 0.42 TCGA-26-5135-01 1 248263039 248263039 G A OR2L13 Missense_Mutation p.R121H 0.37 tolerated(0.06) benign(0.046) TCGA-26-5135-01 1 32084853 32084853 G A HCRTR1 Silent p.P20P 0.37 TCGA-26-5135-01 1 76269590 76269590 G A MSH4 Missense_Mutation p.G140E 0.43 tolerated(0.37) benign(0.023) TCGA-26-5135-01 20 23967182 23967182 A G GGTLC1 Missense_Mutation p.S23P 0.36 tolerated(0.22) benign(0.053) TCGA-26-5135-01 20 43922452 43922452 C T MATN4 Silent p.T567T 0.34 TCGA-26-5135-01 20 49232571 49232571 G A FAM65C Missense_Mutation p.R102C 0.28 tolerated(0.08) benign(0.001) TCGA-26-5135-01 20 60572701 60572706 TTTGTG - TAF4 In_Frame_Del p.A997_M999delinsV 0.30 TCGA-26-5135-01 2 26700699 26700699 G A OTOF Intron 0.33 TCGA-26-5135-01 2 26798883 26798883 C T C2orf70 Missense_Mutation p.P63L 0.35 tolerated(0.29) benign(0.011) TCGA-26-5135-01 2 85818867 85818867 G A VAMP5 Missense_Mutation p.R8Q 0.33 tolerated(0.69) benign(0.098) TCGA-26-5135-01 3 123046533 123046533 C T ADCY5 Missense_Mutation p.E627K 0.38 deleterious(0) possibly_damaging(0.848) TCGA-26-5135-01 3 184021749 184021749 T C PSMD2 Silent p.L446L 0.39 TCGA-26-5135-01 3 194080518 194080518 G A LRRC15 Missense_Mutation p.R425W 0.42 deleterious(0.02) possibly_damaging(0.761) TCGA-26-5135-01 3 48563038 48563038 C T PFKFB4 Missense_Mutation p.R351Q 0.36 probably_damaging(0.934) TCGA-26-5135-01 3 52521957 52521957 G A NISCH Missense_Mutation p.A817T 0.06 tolerated(0.07) benign(0.374) TCGA-26-5135-01 4 159538309 159538309 G A RXFP1 Missense_Mutation p.R236H 0.45 tolerated(0.59) benign(0.001) TCGA-26-5135-01 4 183713542 183713542 G A TENM3 Missense_Mutation p.R1906Q 0.38 tolerated(0.26) possibly_damaging(0.602) TCGA-26-5135-01 4 2930135 2930135 G A ADD1 Missense_Mutation p.G731E 0.40 deleterious_low_confidence(0.01) unknown(0) TCGA-26-5135-01 4 55131177 55131206 TGAGGTGGTTGACCTTCAATGGACTTACCC - PDGFRA In_Frame_Del p.E241_P250del 0.24 TCGA-26-5135-01 5 1216784 1216784 C T SLC6A19 Silent p.Y333Y 0.44 TCGA-26-5135-01 5 140242277 140242277 G A AC005609.1 3'UTR 0.40 TCGA-26-5135-01 5 168112721 168112721 C T SLIT3 Missense_Mutation p.V1176I 0.40 tolerated(0.63) benign(0.003) TCGA-26-5135-01 5 35955903 35955903 C T UGT3A1 Missense_Mutation p.R380H 0.38 tolerated(0.43) benign(0.001) TCGA-26-5135-01 5 45262136 45262136 G A HCN1 Nonsense_Mutation p.R854* 0.42 TCGA-26-5135-01 5 45353296 45353296 C T HCN1 Missense_Mutation p.R428H 0.36 deleterious(0) possibly_damaging(0.637) TCGA-26-5135-01 5 71634538 71634538 C T PTCD2 Silent p.F243F 0.39 TCGA-26-5135-01 5 72370577 72370577 C T FCHO2 Missense_Mutation p.R530W 0.40 deleterious(0) probably_damaging(0.912) TCGA-26-5135-01 6 155504465 155504465 C G TIAM2 Missense_Mutation p.S965R 0.33 deleterious(0.02) benign(0.188) TCGA-26-5135-01 6 29797340 29797340 G C HLA-G Silent p.V255V 0.33 TCGA-26-5135-01 6 31936703 31936703 G A SKIV2L Missense_Mutation p.R1079Q 0.36 deleterious(0.01) benign(0.136) TCGA-26-5135-01 6 36564707 36564707 C T SRSF3 Silent p.P56P 0.28 TCGA-26-5135-01 6 45515082 45515082 T A RUNX2 3'UTR 0.42 TCGA-26-5135-01 6 55360237 55360237 T C HMGCLL1 Missense_Mutation p.N289D 0.25 deleterious(0) probably_damaging(0.966) TCGA-26-5135-01 7 106508579 106508579 C T PIK3CG Silent p.R191R 0.30 TCGA-26-5135-01 7 117368153 117368153 C A CTTNBP2 Missense_Mutation p.V1349L 0.30 tolerated(0.13) benign(0.004) TCGA-26-5135-01 7 122338662 122338662 A C RNF133 Missense_Mutation p.L104R 0.02 deleterious(0) probably_damaging(1) TCGA-26-5135-01 7 127222596 127222596 G A GCC1 Silent p.D600D 0.28 TCGA-26-5135-01 7 142643377 142643377 C T KEL Missense_Mutation p.V411M 0.24 deleterious(0.03) possibly_damaging(0.719) TCGA-26-5135-01 7 150772218 150772218 G A SLC4A2 Intron 0.27 TCGA-26-5135-01 7 15425167 15425167 G A AGMO Silent p.P326P 0.29 TCGA-26-5135-01 8 24324411 24324411 G A ADAM7 Silent p.P163P 0.33 TCGA-26-5135-01 8 70667740 70667740 C T SLCO5A1 Missense_Mutation p.D393N 0.41 tolerated(0.19) benign(0.029) TCGA-26-5135-01 9 136217156 136217156 C T RPL7A Silent p.H159H 0.34 TCGA-26-5135-01 X 148665038 148665038 C T MAGEA9B 5'UTR 0.27 TCGA-26-5136-01 10 124351971 124351971 G A DMBT1 Missense_Mutation p.R787Q 0.69 tolerated(0.3) unknown(0) TCGA-26-5136-01 10 124896723 124896723 G C HMX3 Missense_Mutation p.E184Q 0.17 deleterious(0) probably_damaging(0.922) TCGA-26-5136-01 10 32580102 32580102 T C EPC1 Missense_Mutation p.K322E 0.66 deleterious(0.05) probably_damaging(0.993) TCGA-26-5136-01 10 96163266 96163266 C A TBC1D12 Missense_Mutation p.P299H 0.90 deleterious_low_confidence(0) probably_damaging(0.921) TCGA-26-5136-01 10 96979715 96979715 C T C10orf129 Missense_Mutation p.P396L 0.61 tolerated(0.11) benign(0.103) TCGA-26-5136-01 11 101762250 101762250 C T ANGPTL5 Silent p.G309G 0.40 TCGA-26-5136-01 11 82878503 82878505 TTG - PCF11 In_Frame_Del p.V686del 0.26 TCGA-26-5136-01 11 89531467 89531467 A T TRIM49 Missense_Mutation p.L397H 0.28 deleterious(0) probably_damaging(0.964) TCGA-26-5136-01 12 3389625 3389625 C T TSPAN9 Silent p.N136N 0.18 TCGA-26-5136-01 12 52284862 52284862 G A ANKRD33 Missense_Mutation p.G378S 0.32 tolerated(0.31) benign(0.121) TCGA-26-5136-01 13 30423804 30423805 AA - UBL3 5'UTR 0.36 TCGA-26-5136-01 13 96530054 96530054 T C UGGT2 Silent p.Q1095Q 0.73 TCGA-26-5136-01 14 22564696 22564696 G A TRDV1 Nonsense_Mutation p.W49* 0.30 TCGA-26-5136-01 15 90226620 90226620 C T PEX11A Silent p.L244L 0.38 TCGA-26-5136-01 16 30594901 30594901 C T ZNF785 Intron 0.25 TCGA-26-5136-01 16 3349388 3349400 TTCAGGTTCCTTT - TIGD7 Frame_Shift_Del p.K405Nfs*7 0.32 TCGA-26-5136-01 16 66429972 66429972 C T CDH5 Missense_Mutation p.R410C 0.36 deleterious(0.03) probably_damaging(0.99) TCGA-26-5136-01 16 71488085 71488085 T C ZNF23 5'UTR 0.38 TCGA-26-5136-01 16 89251737 89251737 G A CDH15 Missense_Mutation p.R220H 0.43 deleterious(0) probably_damaging(0.999) TCGA-26-5136-01 17 27240145 27240145 T C PHF12 Missense_Mutation p.T482A 0.35 tolerated(0.85) benign(0) TCGA-26-5136-01 17 7578534 7578534 C A TP53 Missense_Mutation p.K132N 0.79 deleterious(0) probably_damaging(1) TCGA-26-5136-01 18 5415838 5415838 C T EPB41L3 Silent p.P682P 0.22 TCGA-26-5136-01 19 16860196 16860196 G A NWD1 Missense_Mutation p.R248H 0.65 deleterious(0.01) benign(0.049) TCGA-26-5136-01 19 18218415 18218415 C T MAST3 Missense_Mutation p.R20C 0.56 deleterious(0) possibly_damaging(0.459) TCGA-26-5136-01 1 115220069 115220069 G A AMPD1 Missense_Mutation p.R464C 0.36 tolerated(0.07) benign(0.113) TCGA-26-5136-01 1 120927322 120927322 G A FCGR1B Missense_Mutation p.R220C 0.30 tolerated(0.24) benign(0.001) TCGA-26-5136-01 1 156879622 156879622 C T PEAR1 Silent p.A497A 0.31 TCGA-26-5136-01 1 161049529 161049529 C T PVRL4 Missense_Mutation p.R97H 0.46 deleterious(0.04) possibly_damaging(0.819) TCGA-26-5136-01 1 232561420 232561420 G A SIPA1L2 Silent p.N1515N 0.31 TCGA-26-5136-01 1 232626679 232626679 G A SIPA1L2 Nonsense_Mutation p.R583* 0.38 TCGA-26-5136-01 1 248551010 248551010 T C OR2T6 Missense_Mutation p.V34A 0.37 deleterious(0.01) benign(0.06) TCGA-26-5136-01 1 91404393 91404393 C T ZNF644 Missense_Mutation p.V840I 0.37 tolerated(0.13) probably_damaging(0.99) TCGA-26-5136-01 1 9780231 9780231 C T PIK3CD Silent p.S467S 0.43 TCGA-26-5136-01 20 35547889 35547889 G A SAMHD1 Missense_Mutation p.L244F 0.35 deleterious(0) probably_damaging(0.99) TCGA-26-5136-01 20 8862502 8862502 C T PLCB1 3'UTR 0.34 TCGA-26-5136-01 2 16082359 16082359 C T MYCN Missense_Mutation p.T58M 0.39 deleterious(0) probably_damaging(0.996) TCGA-26-5136-01 2 167141183 167141183 C G SCN9A Missense_Mutation p.R585T 0.39 tolerated(0.06) probably_damaging(0.977) TCGA-26-5136-01 2 238270475 238270475 C G COL6A3 Splice_Site p.X2022_splice 0.37 TCGA-26-5136-01 3 178916882 178916882 G A PIK3CA Missense_Mutation p.C90Y 0.08 deleterious(0) probably_damaging(1) TCGA-26-5136-01 3 25832620 25832620 A G OXSM Missense_Mutation p.I37V 0.39 tolerated(0.63) benign(0.001) TCGA-26-5136-01 4 69696492 69696492 G T UGT2B10 Silent p.G494G 0.36 TCGA-26-5136-01 4 89941642 89941642 C T FAM13A Silent p.A132A 0.39 TCGA-26-5136-01 6 44217321 44217321 G T HSP90AB1 Splice_Site p.X118_splice 0.38 TCGA-26-5136-01 7 139724367 139724367 C T PARP12 Missense_Mutation p.R700Q 0.36 deleterious_low_confidence(0.01) probably_damaging(0.992) TCGA-26-5136-01 7 143632582 143632582 T C OR2F2 Missense_Mutation p.L86P 0.30 deleterious(0.01) probably_damaging(0.996) TCGA-26-5136-01 7 150759094 150759094 G A SLC4A2 Missense_Mutation p.R7H 0.26 tolerated_low_confidence(0.09) possibly_damaging(0.84) TCGA-26-5136-01 7 32956992 32956992 T C RP9P RNA 0.29 TCGA-26-5136-01 7 35130052 35130052 C T DPY19L2P1 RNA 0.26 TCGA-26-5136-01 7 66262470 66262470 T C KCTD7 Silent p.D235D 0.27 TCGA-26-5136-01 7 72734159 72734159 C T TRIM50 Missense_Mutation p.R161Q 0.24 tolerated(0.19) possibly_damaging(0.605) TCGA-26-5136-01 7 97922864 97922864 G A BAIAP2L1 Missense_Mutation p.T502M 0.28 deleterious(0) probably_damaging(0.999) TCGA-26-5136-01 9 139379109 139379109 G A C9orf163 Missense_Mutation p.G70E 0.35 tolerated_low_confidence(0.08) probably_damaging(0.969) TCGA-26-5136-01 9 43884982 43884982 C T CNTNAP3B Missense_Mutation p.L759F 0.36 deleterious(0) probably_damaging(0.995) TCGA-26-5136-01 X 105855567 105855567 C T CXorf57 Missense_Mutation p.T86M 0.29 tolerated(0.21) benign(0.032) TCGA-26-5136-01 X 109247264 109247264 G T TMEM164 Nonsense_Mutation p.E88* 0.36 TCGA-26-5136-01 X 11790274 11790274 G A MSL3 Splice_Site p.X428_splice 0.40 TCGA-26-5136-01 X 152710600 152710600 C T TREX2 Missense_Mutation p.V97M 0.28 deleterious(0.02) probably_damaging(0.925) TCGA-26-5136-01 X 152830482 152830482 A T ATP2B3 Missense_Mutation p.E1088V 0.25 deleterious(0.04) benign(0.41) TCGA-26-5136-01 X 3573336 3573336 G C PRKX Missense_Mutation p.F151L 0.35 deleterious(0.01) probably_damaging(1) TCGA-26-5136-01 X 37545375 37545375 C T XK Missense_Mutation p.T54M 0.28 deleterious(0) probably_damaging(0.988) TCGA-26-5136-01 X 47069360 47069360 G C UBA1 Silent p.L679L 0.37 TCGA-26-5136-01 X 48814296 48814296 G A OTUD5 Silent p.D179D 0.29 TCGA-26-5136-01 X 55247002 55247002 G A PAGE5 5'UTR 0.31 TCGA-26-5136-01 X 69871358 69871358 G A TEX11 Silent p.N490N 0.42 TCGA-26-5136-01 X 7811239 7811239 C T VCX 5'UTR 0.27 TCGA-26-5139-01 11 1221855 1221855 C T MUC5AC RNA 0.38 TCGA-26-5139-01 11 51516009 51516009 C T OR4C46 Missense_Mutation p.T243M 0.38 deleterious_low_confidence(0.02) benign(0.292) TCGA-26-5139-01 11 65272212 65272212 A C MALAT1 RNA 0.36 TCGA-26-5139-01 12 107177813 107177814 - A RIC8B Frame_Shift_Ins p.R43Kfs*6 0.28 TCGA-26-5139-01 12 119773039 119773039 C T CCDC60 Missense_Mutation p.R20W 0.34 tolerated_low_confidence(0.35) benign(0) TCGA-26-5139-01 12 43823483 43823483 G A ADAMTS20 Silent p.T1142T 0.21 TCGA-26-5139-01 12 7061224 7061224 G A PTPN6 Silent p.A70A 0.41 TCGA-26-5139-01 12 89917757 89917757 G T GALNT4 Silent p.I190I 0.48 TCGA-26-5139-01 15 25490493 25490493 G A SNORD115-40 3'Flank 0.34 TCGA-26-5139-01 16 81175094 81175094 C G PKD1L2 RNA 0.24 TCGA-26-5139-01 17 7417217 7417217 T - POLR2A Frame_Shift_Del p.T1880Pfs*101 0.34 TCGA-26-5139-01 17 79164553 79164553 C T AZI1 Missense_Mutation p.R998H 0.23 deleterious(0.03) possibly_damaging(0.777) TCGA-26-5139-01 18 28989414 28989414 G A DSG4 Splice_Site p.X645_splice 0.39 TCGA-26-5139-01 18 30950074 30950074 G C CCDC178 Silent p.V96V 0.39 TCGA-26-5139-01 18 61262397 61262397 C T SERPINB13 Silent p.N250N 0.37 TCGA-26-5139-01 19 14046601 14046601 C T PODNL1 Missense_Mutation p.A150T 0.11 tolerated(0.08) possibly_damaging(0.713) TCGA-26-5139-01 19 3728405 3728405 C T TJP3 Intron 0.31 TCGA-26-5139-01 19 40395990 40395990 G A FCGBP Silent p.F2469F 0.10 TCGA-26-5139-01 19 4237140 4237140 C T EBI3 3'UTR 0.22 TCGA-26-5139-01 19 50105110 50105110 G A PRR12 Missense_Mutation p.G1570R 0.31 unknown(0) TCGA-26-5139-01 19 5680623 5680623 T C C19orf70 5'UTR 0.27 TCGA-26-5139-01 19 6586314 6586314 C T CD70 Missense_Mutation p.R100H 0.27 tolerated(0.13) probably_damaging(0.954) TCGA-26-5139-01 19 7734784 7734784 G A RETN Missense_Mutation p.G66S 0.30 deleterious(0.03) benign(0.212) TCGA-26-5139-01 1 151149180 151149180 A T VPS72 Silent p.P356P 0.39 TCGA-26-5139-01 1 155646478 155646478 A G YY1AP1 Missense_Mutation p.F200S 0.38 deleterious(0) benign(0.417) TCGA-26-5139-01 1 156875138 156875138 C T PEAR1 Missense_Mutation p.R77C 0.39 deleterious(0) probably_damaging(0.932) TCGA-26-5139-01 1 157804444 157804444 G A CD5L Silent p.N157N 0.37 TCGA-26-5139-01 1 17084961 17084961 C T MST1L Intron 0.11 TCGA-26-5139-01 20 10256146 10256146 G A SNAP25 Missense_Mutation p.E3K 0.26 tolerated(0.56) benign(0.022) TCGA-26-5139-01 20 18795015 18795015 G C SCP2D1 3'UTR 0.38 TCGA-26-5139-01 22 37482392 37482392 C T TMPRSS6 Missense_Mutation p.V311I 0.39 deleterious(0.04) benign(0.15) TCGA-26-5139-01 2 1926965 1926965 G A MYT1L Silent p.D192D 0.41 TCGA-26-5139-01 2 31620554 31620554 C A XDH Missense_Mutation p.G159C 0.30 deleterious(0) probably_damaging(1) TCGA-26-5139-01 3 120833881 120833881 A G STXBP5L Missense_Mutation p.I194V 0.35 deleterious(0.04) benign(0.014) TCGA-26-5139-01 3 14861539 14861539 G A FGD5 Missense_Mutation p.A321T 0.38 tolerated(0.14) benign(0.002) TCGA-26-5139-01 3 164730787 164730787 G A SI Missense_Mutation p.T1348M 0.32 deleterious(0.01) probably_damaging(0.911) TCGA-26-5139-01 3 42727779 42727779 C T KLHL40 Silent p.S223S 0.21 TCGA-26-5139-01 3 440026 440026 A T CHL1 Missense_Mutation p.N1071Y 0.34 deleterious(0.01) probably_damaging(0.978) TCGA-26-5139-01 3 50385755 50385755 G A NPRL2 Silent p.T269T 0.36 TCGA-26-5139-01 4 126372061 126372061 G A FAT4 Missense_Mutation p.R3297H 0.36 probably_damaging(0.993) TCGA-26-5139-01 4 155241880 155241880 C T DCHS2 Silent p.T1102T 0.41 TCGA-26-5139-01 4 186111564 186111564 T C KIAA1430 Missense_Mutation p.I263V 0.44 tolerated(0.06) benign(0.038) TCGA-26-5139-01 4 26483201 26483201 G A CCKAR 3'UTR 0.38 TCGA-26-5139-01 4 82056416 82056416 C T PRKG2 Missense_Mutation p.V557I 0.35 tolerated(0.36) benign(0.061) TCGA-26-5139-01 5 137275998 137275998 C T FAM13B Silent p.E888E 0.37 TCGA-26-5139-01 5 19544032 19544032 G A CDH18 Missense_Mutation p.L446F 0.41 deleterious(0.01) benign(0.024) TCGA-26-5139-01 5 67591247 67591249 GGT - PIK3R1 Splice_Site p.X583_splice 0.43 TCGA-26-5139-01 6 105800946 105800946 C T PREP Missense_Mutation p.D242N 0.36 deleterious(0.02) benign(0.071) TCGA-26-5139-01 7 55220278 55220278 G A EGFR Missense_Mutation p.C223Y 0.03 deleterious(0) probably_damaging(1) TCGA-26-5139-01 7 55238870 55238870 G T EGFR Missense_Mutation p.C628F 0.82 deleterious(0) probably_damaging(0.929) TCGA-26-5139-01 8 110984560 110984560 G A KCNV1 Silent p.N306N 0.35 TCGA-26-5139-01 8 2005570 2005570 G A MYOM2 Missense_Mutation p.R123H 0.37 deleterious(0.03) possibly_damaging(0.755) TCGA-26-5139-01 8 42587374 42587374 C A CHRNB3 Silent p.T308T 0.66 TCGA-26-5139-01 8 99205173 99205173 G A NIPAL2 3'UTR 0.36 TCGA-26-5139-01 X 100611220 100611220 G A BTK Silent p.G462G 0.35 TCGA-26-5139-01 X 139586734 139586734 C G SOX3 Missense_Mutation p.M164I 0.34 deleterious(0) possibly_damaging(0.844) TCGA-26-5139-01 X 152159506 152159506 G A PNMA5 Missense_Mutation p.R213W 0.33 deleterious(0) possibly_damaging(0.606) TCGA-26-5139-01 X 154185438 154185438 G A F8 Missense_Mutation p.H516Y 0.42 deleterious(0.01) probably_damaging(0.979) TCGA-26-5139-01 X 54319681 54319681 T C WNK3 Silent p.S591S 0.33 TCGA-26-5139-01 X 64744052 64744052 G A LAS1L Missense_Mutation p.T395M 0.39 deleterious(0.04) benign(0.085) TCGA-26-6173-01 10 124376759 124376759 C G DMBT1 Missense_Mutation p.S1496C 0.21 deleterious(0.04) probably_damaging(0.94) TCGA-26-6173-01 11 102709964 102709964 G A MMP3 Missense_Mutation p.R316C 0.23 deleterious(0) probably_damaging(1) TCGA-26-6173-01 11 46783673 46783673 T C CKAP5 Silent p.K1366K 0.06 TCGA-26-6173-01 11 56085805 56085805 C T OR8K3 Missense_Mutation p.T8M 0.32 tolerated_low_confidence(0.17) benign(0.009) TCGA-26-6173-01 11 59828705 59828705 G A MS4A3 Silent p.A24A 0.29 TCGA-26-6173-01 11 65417064 65417064 A C SIPA1 Missense_Mutation p.N853T 0.30 tolerated(0.17) benign(0.001) TCGA-26-6173-01 12 12483054 12483054 G A MANSC1 Silent p.L401L 0.28 TCGA-26-6173-01 14 60945101 60945101 C A C14orf39 Missense_Mutation p.K80N 0.30 deleterious(0) possibly_damaging(0.895) TCGA-26-6173-01 14 69256954 69256954 G A ZFP36L1 Missense_Mutation p.P105S 0.30 tolerated(0.6) benign(0.002) TCGA-26-6173-01 15 89386651 89386651 C T ACAN Missense_Mutation p.R275W 0.23 deleterious(0) unknown(0) TCGA-26-6173-01 16 2580611 2580611 C T CEMP1 Missense_Mutation p.R155H 0.28 tolerated_low_confidence(0.73) benign(0) TCGA-26-6173-01 16 28847275 28847275 A T ATXN2L Missense_Mutation p.T973S 0.17 tolerated(0.69) benign(0.197) TCGA-26-6173-01 17 10304645 10304645 T A MYH8 Nonsense_Mutation p.K1019* 0.23 TCGA-26-6173-01 17 56270743 56270743 G A EPX Missense_Mutation p.R61Q 0.18 tolerated(0.1) benign(0.068) TCGA-26-6173-01 19 54609317 54609317 A C NDUFA3 Silent p.P54P 0.24 TCGA-26-6173-01 19 58868065 58868065 C T ZNF497 Missense_Mutation p.E313K 0.46 tolerated(0.33) benign(0.24) TCGA-26-6173-01 19 7687257 7687257 A G XAB2 Missense_Mutation p.M526T 0.23 tolerated(0.39) benign(0.002) TCGA-26-6173-01 1 152192865 152192865 C T HRNR Missense_Mutation p.G414S 0.35 unknown(0) TCGA-26-6173-01 1 152777634 152777634 G A LCE1C Silent p.G107G 0.37 TCGA-26-6173-01 1 158449884 158449884 A - OR10R2 Frame_Shift_Del p.S74Afs*64 0.17 TCGA-26-6173-01 1 22915717 22915717 G A EPHA8 Intron 0.45 TCGA-26-6173-01 1 40919923 40919923 G T ZFP69B Missense_Mutation p.S59I 0.39 deleterious(0.02) benign(0.004) TCGA-26-6173-01 20 61340986 61340986 G A NTSR1 Missense_Mutation p.G143S 0.22 tolerated(0.07) probably_damaging(0.99) TCGA-26-6173-01 22 41556657 41556657 G A EP300 Missense_Mutation p.C1201Y 0.29 probably_damaging(0.995) TCGA-26-6173-01 2 144381721 144381721 C T ARHGAP15 Silent p.D341D 0.28 TCGA-26-6173-01 2 207174442 207174442 G A ZDBF2 Silent p.S1730S 0.33 TCGA-26-6173-01 3 173525621 173525621 C T NLGN1 Silent p.L215L 0.22 TCGA-26-6173-01 3 37555330 37555330 C A ITGA9 Missense_Mutation p.A325D 0.28 deleterious(0) probably_damaging(0.998) TCGA-26-6173-01 4 10522452 10522452 A G CLNK Silent p.S245S 0.54 TCGA-26-6173-01 4 71255517 71255517 C T SMR3B Silent p.P64P 0.25 TCGA-26-6173-01 5 156738672 156738672 G T CYFIP2 Missense_Mutation p.K305N 0.33 deleterious(0.02) benign(0.019) TCGA-26-6173-01 5 161128647 161128647 C A GABRA6 Silent p.A410A 0.22 TCGA-26-6173-01 5 3599499 3599499 T G IRX1 Missense_Mutation p.L146R 0.18 deleterious(0) probably_damaging(0.995) TCGA-26-6173-01 5 56176540 56176540 G A MAP3K1 Missense_Mutation p.R697H 0.06 deleterious(0.01) probably_damaging(0.999) TCGA-26-6173-01 5 79029879 79029879 G T CMYA5 Missense_Mutation p.G1764V 0.24 probably_damaging(0.941) TCGA-26-6173-01 5 94749823 94749823 G A FAM81B Missense_Mutation p.A156T 0.30 deleterious(0.02) possibly_damaging(0.901) TCGA-26-6173-01 6 117638305 117638305 C T ROS1 Splice_Site p.X2045_splice 0.28 TCGA-26-6173-01 6 17543298 17543298 G A CAP2 Missense_Mutation p.C378Y 0.29 deleterious(0) probably_damaging(1) TCGA-26-6173-01 6 3227849 3227849 G A TUBB2B 5'UTR 0.40 TCGA-26-6173-01 7 123600080 123600083 TAAT - SPAM1 Intron 0.17 TCGA-26-6173-01 7 156743012 156743012 G A NOM1 Missense_Mutation p.G194D 0.11 deleterious(0) benign(0.337) TCGA-26-6173-01 7 6449599 6449599 G A DAGLB Missense_Mutation p.L630F 0.22 deleterious(0.04) probably_damaging(0.996) TCGA-26-6173-01 8 143960555 143960555 G A CYP11B1 Silent p.D96D 0.38 TCGA-26-6173-01 9 140809200 140809200 C T CACNA1B Silent p.I239I 0.21 TCGA-26-6174-01 10 68139038 68139038 C T CTNNA3 Missense_Mutation p.R535H 0.43 tolerated(0.13) unknown(0) TCGA-26-6174-01 10 7759687 7759687 G T ITIH2 Missense_Mutation p.R189M 0.37 deleterious(0) probably_damaging(0.999) TCGA-26-6174-01 10 88769294 88769294 C T RP11-96C23.10 3'Flank 0.47 TCGA-26-6174-01 10 89711915 89711915 A G PTEN Missense_Mutation p.Y178C 0.47 deleterious(0.01) benign(0.288) TCGA-26-6174-01 10 91066921 91066921 A T IFIT2 Missense_Mutation p.Q403L 0.44 tolerated(0.3) benign(0.004) TCGA-26-6174-01 11 129992408 129992408 G A APLP2 Missense_Mutation p.A308T 0.26 tolerated(0.28) benign(0.006) TCGA-26-6174-01 11 2939241 2939241 G A SLC22A18 Missense_Mutation p.D227N 0.10 tolerated(0.36) benign(0.055) TCGA-26-6174-01 11 49974296 49974296 G T OR4C13 Missense_Mutation p.V108F 0.26 deleterious_low_confidence(0) benign(0.19) TCGA-26-6174-01 11 56230082 56230082 C T OR5M9 Missense_Mutation p.V266I 0.27 tolerated(0.08) benign(0.066) TCGA-26-6174-01 11 68542900 68542900 A C CPT1A Missense_Mutation p.Y487D 0.27 tolerated(0.07) benign(0.093) TCGA-26-6174-01 11 70266538 70266538 G A CTTN Missense_Mutation p.V238M 0.27 deleterious(0) probably_damaging(0.999) TCGA-26-6174-01 12 101493475 101493475 T C ANO4 Missense_Mutation p.L674P 0.19 deleterious(0) probably_damaging(1) TCGA-26-6174-01 12 53217702 53217702 A G KRT79 Missense_Mutation p.L372P 0.27 deleterious(0) probably_damaging(1) TCGA-26-6174-01 12 70974843 70974843 G A PTPRB Nonsense_Mutation p.R851* 0.23 TCGA-26-6174-01 13 25373533 25373533 G A RNF17 Missense_Mutation p.G467D 0.14 deleterious(0) probably_damaging(0.998) TCGA-26-6174-01 13 32913746 32913746 C A BRCA2 Missense_Mutation p.H1752N 0.24 deleterious(0.02) possibly_damaging(0.738) TCGA-26-6174-01 13 43175077 43175077 T A TNFSF11 Silent p.P164P 0.18 TCGA-26-6174-01 13 97638923 97638923 G T OXGR1 3'UTR 0.23 TCGA-26-6174-01 14 20249338 20249338 C T OR4M1 Missense_Mutation p.P286L 0.26 deleterious(0) probably_damaging(0.979) TCGA-26-6174-01 14 21897227 21897227 G C CHD8 Missense_Mutation p.Q371E 0.19 tolerated_low_confidence(0.4) benign(0.005) TCGA-26-6174-01 14 31344054 31344054 G A COCH Intron 0.35 TCGA-26-6174-01 14 58063582 58063582 G C SLC35F4 Missense_Mutation p.L12V 0.15 tolerated_low_confidence(0.36) benign(0) TCGA-26-6174-01 14 96779478 96779478 T C ATG2B Missense_Mutation p.I1256V 0.17 tolerated(1) benign(0.001) TCGA-26-6174-01 15 91452684 91452684 T C MAN2A2 Missense_Mutation p.Y442H 0.27 deleterious(0.01) benign(0.211) TCGA-26-6174-01 15 97326893 97326893 C T SPATA8 Missense_Mutation p.P3L 0.24 tolerated_low_confidence(1) possibly_damaging(0.859) TCGA-26-6174-01 16 20373885 20373885 C G PDILT Missense_Mutation p.K419N 0.21 tolerated(0.25) benign(0.2) TCGA-26-6174-01 16 23712369 23712369 A G ERN2 Missense_Mutation p.S472P 0.23 tolerated(0.14) benign(0.004) TCGA-26-6174-01 16 55543215 55543215 C T LPCAT2 Missense_Mutation p.P41L 0.35 tolerated(0.38) benign(0.003) TCGA-26-6174-01 16 81095126 81095126 G A C16orf46 Silent p.N276N 0.10 TCGA-26-6174-01 16 85120720 85120720 G A KIAA0513 Silent p.K378K 0.27 TCGA-26-6174-01 17 38859417 38859417 C T KRT24 Missense_Mutation p.D177N 0.25 deleterious(0) possibly_damaging(0.725) TCGA-26-6174-01 17 67079124 67079124 G C ABCA6 Missense_Mutation p.N1502K 0.08 tolerated(0.11) benign(0.007) TCGA-26-6174-01 17 7466491 7466491 G A SENP3 Missense_Mutation p.R33H 0.33 tolerated_low_confidence(0.17) unknown(0) TCGA-26-6174-01 17 7948185 7948185 G A ALOX15B Missense_Mutation p.A239T 0.20 deleterious(0) probably_damaging(0.98) TCGA-26-6174-01 18 74625839 74625839 G A ZNF236 Missense_Mutation p.E1014K 0.12 tolerated(0.19) probably_damaging(0.982) TCGA-26-6174-01 19 22940690 22940690 T C ZNF99 Missense_Mutation p.E674G 0.19 deleterious(0.01) probably_damaging(0.998) TCGA-26-6174-01 19 34264003 34264003 G A CHST8 3'UTR 0.46 TCGA-26-6174-01 19 45561033 45561033 G A CLASRP Missense_Mutation p.G164S 0.20 deleterious(0.03) probably_damaging(0.99) TCGA-26-6174-01 19 5221104 5221104 A C PTPRS Missense_Mutation p.L1121R 0.18 deleterious(0) benign(0.183) TCGA-26-6174-01 19 53645135 53645135 G A ZNF347 Missense_Mutation p.R317C 0.24 deleterious(0) possibly_damaging(0.764) TCGA-26-6174-01 19 54850352 54850352 G C LILRA4 Missense_Mutation p.L5V 0.17 deleterious(0.01) benign(0.001) TCGA-26-6174-01 19 54850412 54850412 G C LILRA4 5'UTR 0.18 TCGA-26-6174-01 19 5866538 5866538 C T FUT5 3'UTR 0.18 TCGA-26-6174-01 19 7676675 7676675 G A CAMSAP3 Silent p.S459S 0.23 TCGA-26-6174-01 19 7828059 7828059 G C CLEC4M 5'UTR 0.24 TCGA-26-6174-01 1 115401212 115401212 G A SYCP1 Silent p.E112E 0.19 TCGA-26-6174-01 1 118524021 118524021 A G SPAG17 Missense_Mutation p.F1959S 0.17 tolerated(0.43) benign(0.001) TCGA-26-6174-01 1 159683681 159683681 C A CRP Missense_Mutation p.E103D 0.27 deleterious(0.03) benign(0.009) TCGA-26-6174-01 1 162492275 162492275 G C UHMK1 Missense_Mutation p.V399L 0.23 deleterious(0) probably_damaging(0.997) TCGA-26-6174-01 1 179399690 179399690 A C AXDND1 Missense_Mutation p.E479A 0.21 tolerated(0.05) benign(0.001) TCGA-26-6174-01 1 179620128 179620128 G A TDRD5 Missense_Mutation p.E643K 0.05 deleterious(0) probably_damaging(0.998) TCGA-26-6174-01 1 23111326 23111326 G A EPHB2 Missense_Mutation p.V190M 0.29 deleterious(0) probably_damaging(0.927) TCGA-26-6174-01 1 29606627 29606627 G A PTPRU Silent p.P614P 0.21 TCGA-26-6174-01 1 93298990 93298990 C A RPL5 Nonsense_Mutation p.Y16* 0.26 TCGA-26-6174-01 20 30065686 30065686 C T REM1 Silent p.V132V 0.19 TCGA-26-6174-01 20 43029970 43029970 C T HNF4A 5'UTR 0.21 TCGA-26-6174-01 21 35821527 35821527 T C KCNE1 3'UTR 0.23 TCGA-26-6174-01 2 174783399 174783399 C T SP3 Missense_Mutation p.G585E 0.24 tolerated(1) benign(0.03) TCGA-26-6174-01 2 179483009 179483009 C A TTN Missense_Mutation p.V15726F 0.23 TCGA-26-6174-01 2 179650718 179650718 C T TTN Missense_Mutation p.A743T 0.22 TCGA-26-6174-01 2 233433795 233433795 T A EIF4E2 3'UTR 0.35 TCGA-26-6174-01 2 242576398 242576398 T C THAP4 Missense_Mutation p.N12S 0.20 deleterious_low_confidence(0.03) benign(0.097) TCGA-26-6174-01 2 31483756 31483756 A G EHD3 Missense_Mutation p.N295D 0.24 deleterious(0) benign(0.216) TCGA-26-6174-01 2 97035182 97035182 C A NCAPH Missense_Mutation p.Q704K 0.12 tolerated(0.51) benign(0.208) TCGA-26-6174-01 3 122271392 122271392 G A PARP9 Missense_Mutation p.S362L 0.13 tolerated(0.3) benign(0.001) TCGA-26-6174-01 3 131261494 131261494 C T CPNE4 Missense_Mutation p.M482I 0.20 tolerated(0.72) benign(0.001) TCGA-26-6174-01 3 132413753 132413754 - C NPHP3 Frame_Shift_Ins p.D743Gfs*7 0.16 TCGA-26-6174-01 3 189597870 189597870 T G TP63 Intron 0.23 TCGA-26-6174-01 3 37583996 37583996 G A ITGA9 Missense_Mutation p.E537K 0.20 tolerated(0.29) possibly_damaging(0.871) TCGA-26-6174-01 3 38835414 38835414 C T SCN10A Missense_Mutation p.A30T 0.28 tolerated(0.09) possibly_damaging(0.821) TCGA-26-6174-01 3 46712428 46712428 T C ALS2CL 3'UTR 0.24 TCGA-26-6174-01 3 89259060 89259060 C G EPHA3 Nonsense_Mutation p.Y68* 0.25 TCGA-26-6174-01 3 97852369 97852369 A G OR5H1 Silent p.L276L 0.27 TCGA-26-6174-01 4 169279395 169279395 C T DDX60L Missense_Mutation p.R1675H 0.30 tolerated(0.15) benign(0) TCGA-26-6174-01 4 76522320 76522320 T C CDKL2 Missense_Mutation p.N374S 0.28 tolerated(0.08) benign(0.144) TCGA-26-6174-01 4 83825996 83825996 C G THAP9 Missense_Mutation p.S63C 0.04 deleterious(0) probably_damaging(1) TCGA-26-6174-01 5 140182250 140182250 G C PCDHA3 Missense_Mutation p.V490L 0.26 deleterious_low_confidence(0.02) possibly_damaging(0.834) TCGA-26-6174-01 5 140263908 140263908 C T PCDHA13 Silent p.G685G 0.23 TCGA-26-6174-01 5 154393521 154393521 C T KIF4B Silent p.F34F 0.24 TCGA-26-6174-01 5 16877810 16877810 G A MYO10 Missense_Mutation p.R10W 0.32 tolerated(0.11) probably_damaging(0.982) TCGA-26-6174-01 5 178579165 178579165 C T ADAMTS2 Missense_Mutation p.G536E 0.16 deleterious(0) probably_damaging(1) TCGA-26-6174-01 5 50091080 50091080 A G PARP8 Silent p.E419E 0.26 TCGA-26-6174-01 5 55083703 55083703 T C DDX4 Silent p.H349H 0.06 TCGA-26-6174-01 5 66460727 66460727 C A MAST4 Missense_Mutation p.A1907D 0.25 possibly_damaging(0.662) TCGA-26-6174-01 5 67591145 67591145 T G PIK3R1 Missense_Mutation p.Y580D 0.22 deleterious(0) probably_damaging(0.998) TCGA-26-6174-01 6 117715327 117715327 G C ROS1 Missense_Mutation p.L388V 0.18 tolerated(0.15) benign(0.135) TCGA-26-6174-01 6 123319281 123319281 T C CLVS2 Missense_Mutation p.V120A 0.21 deleterious(0.01) benign(0.411) TCGA-26-6174-01 6 138638494 138638494 G C KIAA1244 Missense_Mutation p.L1484F 0.30 deleterious(0) probably_damaging(0.999) TCGA-26-6174-01 6 33132163 33132163 C A COL11A2 Missense_Mutation p.V1565F 0.37 unknown(0) TCGA-26-6174-01 6 35754829 35754829 C T CLPSL1 Missense_Mutation p.R52C 0.11 deleterious(0) possibly_damaging(0.523) TCGA-26-6174-01 6 62407128 62407128 T C KHDRBS2 Silent p.G308G 0.29 TCGA-26-6174-01 6 66094367 66094367 T A EYS Missense_Mutation p.N404I 0.14 tolerated(0.07) benign(0.265) TCGA-26-6174-01 6 86203654 86203654 C T NT5E Missense_Mutation p.H553Y 0.18 tolerated(1) benign(0.001) TCGA-26-6174-01 7 100451836 100451836 C G SLC12A9 Nonsense_Mutation p.S6* 0.11 TCGA-26-6174-01 7 131883269 131883269 C T PLXNA4 Missense_Mutation p.V905M 0.15 deleterious(0.02) possibly_damaging(0.592) TCGA-26-6174-01 7 21469834 21469834 T A SP4 Missense_Mutation p.S351T 0.19 tolerated(0.95) benign(0.017) TCGA-26-6174-01 7 95665015 95665015 G A DYNC1I1 Missense_Mutation p.V456M 0.16 deleterious(0) probably_damaging(0.971) TCGA-26-6174-01 8 102585963 102585963 A T GRHL2 Missense_Mutation p.T268S 0.30 tolerated(0.28) benign(0.377) TCGA-26-6174-01 8 124992825 124992825 G A FER1L6 Missense_Mutation p.G395D 0.22 deleterious(0) probably_damaging(1) TCGA-26-6174-01 9 140477434 140477434 C T ZMYND19 Splice_Site p.X180_splice 0.21 TCGA-26-6174-01 9 32543467 32543467 T C TOPORS Missense_Mutation p.I352M 0.45 deleterious(0.01) possibly_damaging(0.84) TCGA-26-6174-01 X 115592953 115592953 A C CT83 Silent p.L99L 0.24 TCGA-26-6174-01 X 135825762 135825762 G A ARHGEF6 Missense_Mutation p.R215C 0.21 deleterious(0) probably_damaging(0.946) TCGA-26-6174-01 X 138668562 138668562 C T MCF2 Silent p.A945A 0.31 TCGA-26-6174-01 X 148564457 148564457 G T IDS Silent p.S280S 0.17 TCGA-26-6174-01 X 154001511 154001511 G C DKC1 Missense_Mutation p.G381A 0.17 deleterious(0) possibly_damaging(0.72) TCGA-26-6174-01 X 1584312 1584312 T G P2RY8 3'UTR 0.23 TCGA-26-6174-01 X 48371104 48371104 G A PORCN Missense_Mutation p.R228H 0.28 deleterious(0.04) benign(0.135) TCGA-26-6174-01 X 48759746 48759746 C T PQBP1 Missense_Mutation p.R177C 0.14 deleterious(0) probably_damaging(0.951) TCGA-26-6174-01 X 85156121 85156121 A T CHM Missense_Mutation p.F439L 0.13 tolerated(1) benign(0.006) TCGA-26-A7UX-01 10 89690819 89690820 TA - PTEN Frame_Shift_Del p.Y76* 0.52 TCGA-26-A7UX-01 11 58384918 58384918 G A ZFP91 Silent p.T484T 0.44 TCGA-26-A7UX-01 12 101711355 101711355 C T UTP20 Silent p.A884A 0.37 TCGA-26-A7UX-01 12 88443101 88443101 C T CEP290 Missense_Mutation p.E2434K 0.61 probably_damaging(0.997) TCGA-26-A7UX-01 13 28903811 28903811 G C FLT1 Missense_Mutation p.T883S 0.38 tolerated(0.46) possibly_damaging(0.846) TCGA-26-A7UX-01 16 4945310 4945310 C T PPL Silent p.P398P 0.35 TCGA-26-A7UX-01 17 1444904 1444904 T C PITPNA Missense_Mutation p.K110E 0.46 tolerated(0.61) possibly_damaging(0.873) TCGA-26-A7UX-01 17 42541893 42541893 A G GPATCH8 Missense_Mutation p.L47S 0.50 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-26-A7UX-01 19 40398143 40398143 G A FCGBP Missense_Mutation p.P2275L 0.19 probably_damaging(0.913) TCGA-26-A7UX-01 19 41385996 41385996 G A CYP2A7 Missense_Mutation p.T216M 0.34 tolerated(0.11) benign(0.13) TCGA-26-A7UX-01 19 47549900 47549900 G A TMEM160 Silent p.I84I 0.08 TCGA-26-A7UX-01 19 57640260 57640260 C T USP29 Missense_Mutation p.R73C 0.40 tolerated(0.05) benign(0) TCGA-26-A7UX-01 1 196645153 196645153 T C CFH Missense_Mutation p.C129R 0.44 deleterious(0) probably_damaging(0.999) TCGA-26-A7UX-01 1 198492696 198492696 T A ATP6V1G3 Splice_Site p.X62_splice 0.59 TCGA-26-A7UX-01 1 43317328 43317328 C T ZNF691 Silent p.F264F 0.50 TCGA-26-A7UX-01 20 32379019 32379019 G A ZNF341 Missense_Mutation p.R747H 0.47 deleterious(0.02) benign(0.004) TCGA-26-A7UX-01 20 45865201 45865201 T C ZMYND8 Missense_Mutation p.S863G 0.33 tolerated(0.07) benign(0.004) TCGA-26-A7UX-01 2 10747412 10747412 C A NOL10 Missense_Mutation p.C351F 0.54 deleterious(0) probably_damaging(0.993) TCGA-26-A7UX-01 2 233349197 233349197 C T ECEL1 Missense_Mutation p.R390H 0.45 tolerated(0.07) benign(0.019) TCGA-26-A7UX-01 2 73145350 73145350 G A EMX1 Missense_Mutation p.M123I 0.64 tolerated(0.26) benign(0.077) TCGA-26-A7UX-01 3 183756363 183756363 G A HTR3D Silent p.A362A 0.68 TCGA-26-A7UX-01 3 52522182 52522182 C T NISCH Missense_Mutation p.R892C 0.38 deleterious(0.02) possibly_damaging(0.793) TCGA-26-A7UX-01 3 62578344 62578344 C T CADPS Missense_Mutation p.V469I 0.47 tolerated(0.27) benign(0.103) TCGA-26-A7UX-01 4 189025991 189025991 C A TRIML2 Missense_Mutation p.Q45H 0.37 deleterious(0) probably_damaging(0.923) TCGA-26-A7UX-01 5 140559327 140559327 C T PCDHB8 Missense_Mutation p.A571V 0.38 tolerated_low_confidence(0.05) benign(0.087) TCGA-26-A7UX-01 5 140736930 140736930 G T PCDHGA4 Missense_Mutation p.K721N 0.41 tolerated_low_confidence(0.23) benign(0.009) TCGA-26-A7UX-01 5 160061445 160061445 C T ATP10B Missense_Mutation p.D433N 0.44 deleterious(0) probably_damaging(1) TCGA-26-A7UX-01 5 56167776 56167776 G T MAP3K1 Missense_Mutation p.L447F 0.51 deleterious(0) probably_damaging(0.959) TCGA-26-A7UX-01 6 138584677 138584677 G A KIAA1244 Missense_Mutation p.R686Q 0.60 tolerated(0.16) benign(0.007) TCGA-26-A7UX-01 6 159646646 159646646 A T FNDC1 Missense_Mutation p.I322F 0.38 deleterious(0) unknown(0) TCGA-26-A7UX-01 6 25813137 25813137 C T SLC17A1 Silent p.T273T 0.49 TCGA-26-A7UX-01 6 29342425 29342425 G A OR12D3 Missense_Mutation p.L214F 0.43 tolerated(0.09) benign(0.33) TCGA-26-A7UX-01 6 32016379 32016379 G A TNXB 5'Flank 0.09 TCGA-26-A7UX-01 6 71569788 71569788 C A B3GAT2 3'UTR 0.54 TCGA-26-A7UX-01 7 100284293 100284293 G A GIGYF1 Missense_Mutation p.R225C 0.39 deleterious(0) unknown(0) TCGA-26-A7UX-01 7 102566822 102566822 C A FBXL13 Splice_Site p.X260_splice 0.42 TCGA-26-A7UX-01 7 141619259 141619259 C T OR9A4 Missense_Mutation p.T195M 0.30 tolerated(0.11) benign(0.097) TCGA-26-A7UX-01 7 143956104 143956104 C A OR2A7 Silent p.L206L 0.17 TCGA-26-A7UX-01 7 42003935 42003935 A G GLI3 Missense_Mutation p.M1579T 0.38 deleterious(0) benign(0.103) TCGA-26-A7UX-01 7 76109887 76109887 G A DTX2 Missense_Mutation p.V21M 0.27 deleterious(0) probably_damaging(1) TCGA-26-A7UX-01 8 102381627 102381627 G A NACAP1 RNA 0.40 TCGA-26-A7UX-01 9 103947748 103947748 C T LPPR1 5'UTR 0.41 TCGA-26-A7UX-01 X 69282490 69282490 C T OTUD6A Missense_Mutation p.T39M 0.82 deleterious(0) benign(0.202) TCGA-26-A7UX-01 X 89177281 89177281 G A TGIF2LX Missense_Mutation p.R66H 0.86 tolerated(0.06) probably_damaging(0.98) TCGA-27-1830-01 10 61836046 61836046 C T ANK3 Silent p.T1531T 0.49 TCGA-27-1830-01 10 98157009 98157009 G A TLL2 Missense_Mutation p.R440W 0.40 deleterious(0) possibly_damaging(0.57) TCGA-27-1830-01 11 56143118 56143118 A T OR8U1 Missense_Mutation p.T7S 0.13 tolerated(0.44) benign(0.057) TCGA-27-1830-01 12 123794321 123794321 C T SBNO1 Silent p.A1126A 0.25 TCGA-27-1830-01 12 53294405 53294405 G A KRT8 Silent p.D247D 0.25 TCGA-27-1830-01 12 6127888 6127888 G A VWF Nonsense_Mutation p.R1566* 0.17 TCGA-27-1830-01 12 66597512 66597512 G A IRAK3 Nonsense_Mutation p.W52* 0.36 TCGA-27-1830-01 12 7528295 7528295 C T CD163L1 Splice_Site p.X896_splice 0.27 TCGA-27-1830-01 14 103372178 103372178 G A TRAF3 3'UTR 0.07 TCGA-27-1830-01 16 1498997 1498997 G A CLCN7 Silent p.T589T 0.35 TCGA-27-1830-01 16 71509676 71509676 G A ZNF19 Silent p.S258S 0.20 TCGA-27-1830-01 16 75513068 75513068 C T CHST6 Missense_Mutation p.R220H 0.36 tolerated(0.22) benign(0.26) TCGA-27-1830-01 16 84066963 84066963 G A SLC38A8 Missense_Mutation p.P167L 0.05 deleterious(0.03) benign(0.365) TCGA-27-1830-01 17 41166266 41166266 G A IFI35 Missense_Mutation p.V273I 0.59 tolerated(0.1) benign(0.071) TCGA-27-1830-01 17 7577538 7577538 C T TP53 Missense_Mutation p.R248Q 0.58 deleterious(0) probably_damaging(1) TCGA-27-1830-01 18 29054117 29054117 C T DSG3 Missense_Mutation p.A712V 0.20 tolerated(1) benign(0) TCGA-27-1830-01 18 70502540 70502540 A T NETO1 Intron 0.05 TCGA-27-1830-01 19 2271460 2271460 C T OAZ1 Silent p.P74P 0.30 TCGA-27-1830-01 19 36230669 36230669 G A IGFLR1 Silent p.G221G 0.30 TCGA-27-1830-01 19 50208532 50208532 C T CPT1C Missense_Mutation p.T314M 0.03 deleterious(0) probably_damaging(0.985) TCGA-27-1830-01 19 5831639 5831639 G A FUT6 Missense_Mutation p.R314C 0.25 deleterious(0.04) probably_damaging(0.953) TCGA-27-1830-01 1 115487554 115487554 G A SYCP1 Missense_Mutation p.R702Q 0.33 deleterious(0.02) probably_damaging(1) TCGA-27-1830-01 1 117484643 117484643 G T PTGFRN Missense_Mutation p.C119F 0.30 deleterious(0) probably_damaging(0.999) TCGA-27-1830-01 1 151994969 151994969 G T NBPF18P RNA 0.19 TCGA-27-1830-01 1 207649599 207649599 C T CR2 Missense_Mutation p.P913S 0.27 deleterious(0.02) probably_damaging(0.982) TCGA-27-1830-01 1 47882255 47882255 C A FOXE3 Missense_Mutation p.R90S 0.09 deleterious(0) probably_damaging(0.982) TCGA-27-1830-01 1 59805657 59805657 C T FGGY Nonsense_Mutation p.Q77* 0.06 TCGA-27-1830-01 1 76349367 76349367 A T MSH4 Missense_Mutation p.K656N 0.34 deleterious(0.04) possibly_damaging(0.451) TCGA-27-1830-01 20 30584473 30584473 C T XKR7 Missense_Mutation p.A318V 0.27 deleterious(0.05) probably_damaging(0.995) TCGA-27-1830-01 20 42788430 42788430 C T JPH2 Missense_Mutation p.D333N 0.27 deleterious(0.02) probably_damaging(0.967) TCGA-27-1830-01 21 47349908 47349908 C A PCBP3 Silent p.P265P 0.22 TCGA-27-1830-01 2 179462736 179462736 T A TTN Missense_Mutation p.K19054M 0.10 TCGA-27-1830-01 2 210518141 210518141 G C MAP2 Missense_Mutation p.D83H 0.03 tolerated_low_confidence(0.08) possibly_damaging(0.896) TCGA-27-1830-01 2 39262448 39262448 T C SOS1 Missense_Mutation p.I327V 0.26 tolerated(0.34) benign(0.007) TCGA-27-1830-01 2 74462257 74462257 G C SLC4A5 Missense_Mutation p.P802A 0.12 deleterious(0) probably_damaging(0.951) TCGA-27-1830-01 3 123457797 123457797 G A MYLK Nonsense_Mutation p.R179* 0.34 TCGA-27-1830-01 3 98506930 98506930 C T ST3GAL6 Missense_Mutation p.T161I 0.28 deleterious(0) probably_damaging(1) TCGA-27-1830-01 4 104510963 104510963 C T TACR3 Missense_Mutation p.R425Q 0.33 tolerated(0.31) benign(0.001) TCGA-27-1830-01 4 52765498 52765498 C G DCUN1D4 Missense_Mutation p.S190C 0.12 deleterious(0) possibly_damaging(0.563) TCGA-27-1830-01 4 66233108 66233108 C T EPHA5 Missense_Mutation p.E631K 0.18 deleterious(0.01) benign(0.152) TCGA-27-1830-01 4 70596362 70596362 A G SULT1B1 Missense_Mutation p.L212P 0.39 deleterious(0) probably_damaging(0.999) TCGA-27-1830-01 4 70596383 70596383 A C SULT1B1 Missense_Mutation p.I205S 0.34 deleterious(0) probably_damaging(0.982) TCGA-27-1830-01 4 71201006 71201006 G A CABS1 Missense_Mutation p.D84N 0.29 tolerated(0.78) benign(0.006) TCGA-27-1830-01 5 13841162 13841162 T A DNAH5 Missense_Mutation p.K1854N 0.33 benign(0.403) TCGA-27-1830-01 5 162945327 162945327 T G MAT2B Silent p.P321P 0.08 TCGA-27-1830-01 6 109319765 109319765 C T SESN1 Missense_Mutation p.G308D 0.10 tolerated(0.2) probably_damaging(1) TCGA-27-1830-01 6 51941121 51941121 G A PKHD1 Missense_Mutation p.A134V 0.30 tolerated(0.19) benign(0.049) TCGA-27-1830-01 6 82924066 82924066 A C IBTK Silent p.V694V 0.30 TCGA-27-1830-01 7 113518248 113518248 G T PPP1R3A Missense_Mutation p.P967T 0.04 tolerated(0.39) benign(0.005) TCGA-27-1830-01 7 131866156 131866156 G A PLXNA4 Missense_Mutation p.T1159M 0.18 deleterious(0) possibly_damaging(0.736) TCGA-27-1830-01 7 142000857 142000857 C A TRBV2 5'UTR 0.18 TCGA-27-1830-01 7 150171329 150171329 G A GIMAP8 Silent p.P304P 0.19 TCGA-27-1830-01 7 72643636 72643636 G A NCF1B RNA 0.16 TCGA-27-1830-01 7 88966247 88966247 A G ZNF804B Silent p.V1317V 0.04 TCGA-27-1830-01 8 139209806 139209806 A G FAM135B Missense_Mutation p.F259S 0.07 deleterious(0) benign(0.271) TCGA-27-1830-01 8 30702861 30702861 C T TEX15 Missense_Mutation p.A1225T 0.33 tolerated(0.51) benign(0.012) TCGA-27-1830-01 8 6783568 6783568 G A DEFA6 5'UTR 0.20 TCGA-27-1830-01 9 130206381 130206381 G C ZNF79 Missense_Mutation p.E134D 0.04 tolerated(0.1) benign(0.001) TCGA-27-1830-01 9 40716214 40716214 G A FAM74A3 RNA 0.15 TCGA-27-1830-01 X 77913028 77913028 A G ZCCHC5 Missense_Mutation p.I297T 0.78 tolerated(0.46) benign(0.052) TCGA-27-1831-01 10 131640486 131640486 G C EBF3 Missense_Mutation p.I413M 0.26 deleterious_low_confidence(0.02) benign(0.406) TCGA-27-1831-01 10 74666378 74666378 A G OIT3 Missense_Mutation p.N190S 0.33 tolerated(0.31) benign(0.316) TCGA-27-1831-01 11 101793446 101793446 G A KIAA1377 Missense_Mutation p.R68Q 0.32 deleterious(0) probably_damaging(1) TCGA-27-1831-01 11 5068212 5068212 C T OR52J3 Missense_Mutation p.R153C 0.38 deleterious(0) benign(0.015) TCGA-27-1831-01 11 64521011 64521011 G A PYGM Silent p.S461S 0.33 TCGA-27-1831-01 11 94113625 94113625 C T GPR83 Missense_Mutation p.R321H 0.37 tolerated(0.67) benign(0.001) TCGA-27-1831-01 12 100897255 100897255 G T NR1H4 Missense_Mutation p.M30I 0.28 tolerated_low_confidence(0.45) benign(0) TCGA-27-1831-01 12 109293186 109293186 C T DAO Missense_Mutation p.R283W 0.25 deleterious(0) probably_damaging(0.999) TCGA-27-1831-01 12 13716353 13716353 C T GRIN2B Silent p.T1273T 0.26 TCGA-27-1831-01 12 91363838 91363838 G A EPYC Nonsense_Mutation p.R261* 0.33 TCGA-27-1831-01 14 21793505 21793505 C A RPGRIP1 Missense_Mutation p.T777N 0.57 deleterious(0.01) benign(0.095) TCGA-27-1831-01 15 74238821 74238821 C T LOXL1 Silent p.R425R 0.52 TCGA-27-1831-01 16 86613377 86613377 T C FOXL1 3'UTR 0.38 TCGA-27-1831-01 17 31105570 31105570 G A MYO1D Missense_Mutation p.T109M 0.33 deleterious(0) probably_damaging(1) TCGA-27-1831-01 17 5050405 5050405 C T USP6 Nonsense_Mutation p.Q783* 0.08 TCGA-27-1831-01 17 61428697 61428697 A G TANC2 Missense_Mutation p.I558V 0.37 tolerated(0.13) benign(0.029) TCGA-27-1831-01 18 7888125 7888125 C A PTPRM Missense_Mutation p.A73D 0.32 tolerated(0.07) benign(0.2) TCGA-27-1831-01 19 11448018 11448018 C T RAB3D Missense_Mutation p.D20N 0.30 deleterious(0.01) benign(0.08) TCGA-27-1831-01 19 15839588 15839589 - CTTATTGTGG OR10H2 Frame_Shift_Ins p.V249Afs*27 0.20 TCGA-27-1831-01 19 23543307 23543307 G C ZNF91 Missense_Mutation p.P825R 0.11 deleterious(0) probably_damaging(0.999) TCGA-27-1831-01 19 9087832 9087832 G A MUC16 Missense_Mutation p.T1328M 0.29 unknown(0) TCGA-27-1831-01 1 161165991 161165991 G T ADAMTS4 Missense_Mutation p.Q354K 0.09 tolerated(0.07) probably_damaging(0.998) TCGA-27-1831-01 1 173552735 173552735 T A SLC9C2 Missense_Mutation p.I184F 0.32 tolerated(0.05) benign(0.211) TCGA-27-1831-01 1 215972257 215972257 C T USH2A Missense_Mutation p.R3317H 0.32 benign(0.001) TCGA-27-1831-01 1 223568231 223568231 C T C1orf65 Missense_Mutation p.R472C 0.38 deleterious(0) probably_damaging(0.994) TCGA-27-1831-01 1 22924647 22924647 G A EPHA8 Missense_Mutation p.R707H 0.32 deleterious(0.01) possibly_damaging(0.572) TCGA-27-1831-01 1 23520071 23520071 G A HTR1D Silent p.I214I 0.42 TCGA-27-1831-01 1 237863751 237863751 C T RYR2 Silent p.F3117F 0.28 TCGA-27-1831-01 1 247587925 247587925 G T NLRP3 Missense_Mutation p.A394S 0.33 deleterious(0.02) benign(0.028) TCGA-27-1831-01 20 23016973 23016973 G A SSTR4 Missense_Mutation p.V285M 0.41 deleterious(0.04) benign(0.072) TCGA-27-1831-01 20 31897622 31897622 T C BPIFB1 3'UTR 0.33 TCGA-27-1831-01 21 37833888 37833888 C T CLDN14 Missense_Mutation p.V36M 0.59 deleterious(0.03) possibly_damaging(0.582) TCGA-27-1831-01 2 18112318 18112318 G A KCNS3 Missense_Mutation p.E15K 0.31 tolerated(0.31) benign(0.298) TCGA-27-1831-01 2 21227512 21227512 C T APOB Missense_Mutation p.A3942T 0.29 benign(0) TCGA-27-1831-01 2 238275630 238275630 C A COL6A3 Nonsense_Mutation p.E1734* 0.04 TCGA-27-1831-01 3 129275080 129275080 G AT PLXND1 3'UTR 0.39 TCGA-27-1831-01 3 45132920 45132920 C T CDCP1 Missense_Mutation p.V580M 0.31 deleterious(0.05) possibly_damaging(0.9) TCGA-27-1831-01 4 147824706 147824706 G A TTC29 Silent p.Y192Y 0.29 TCGA-27-1831-01 4 184166575 184166576 - A WWC2 Frame_Shift_Ins p.M206Nfs*9 0.33 TCGA-27-1831-01 4 38830723 38830723 C T TLR6 Silent p.R124R 0.29 TCGA-27-1831-01 4 55155241 55155241 G C PDGFRA Missense_Mutation p.S947T 0.24 tolerated(0.32) possibly_damaging(0.71) TCGA-27-1831-01 4 56435994 56435994 T C PDCL2 Missense_Mutation p.K85E 0.30 tolerated(0.96) benign(0.009) TCGA-27-1831-01 4 6302612 6302612 G A WFS1 Missense_Mutation p.V364M 0.31 tolerated(0.26) benign(0.384) TCGA-27-1831-01 4 74853312 74853312 G T PPBP Missense_Mutation p.T69N 0.28 deleterious(0.02) possibly_damaging(0.894) TCGA-27-1831-01 5 150947475 150947475 C T FAT2 Missense_Mutation p.G340S 0.31 benign(0.001) TCGA-27-1831-01 5 54423154 54423154 C T CDC20B Missense_Mutation p.R307Q 0.34 tolerated(0.08) benign(0.019) TCGA-27-1831-01 6 134491291 134491291 A G SGK1 3'UTR 0.38 TCGA-27-1831-01 7 100779013 100779013 G A SERPINE1 Missense_Mutation p.V340I 0.13 deleterious(0.04) benign(0.128) TCGA-27-1831-01 7 103205920 103205920 C T RELN Missense_Mutation p.C1672Y 0.21 deleterious(0) probably_damaging(0.997) TCGA-27-1831-01 7 107824688 107824688 C A NRCAM Missense_Mutation p.W767C 0.19 deleterious(0) probably_damaging(1) TCGA-27-1831-01 7 128355633 128355633 G A FAM71F1 Silent p.P46P 0.14 TCGA-27-1831-01 7 140035130 140035130 G C SLC37A3 3'UTR 0.16 TCGA-27-1831-01 7 142231587 142231587 G A TRBV10-1 Silent p.C110C 0.21 TCGA-27-1831-01 7 157041143 157041143 G A UBE3C Missense_Mutation p.D855N 0.24 deleterious(0) possibly_damaging(0.451) TCGA-27-1831-01 7 19765216 19765216 C T TMEM196 Missense_Mutation p.R127Q 0.22 deleterious(0.03) unknown(0) TCGA-27-1831-01 7 4050700 4050700 C T SDK1 Missense_Mutation p.A745V 0.28 deleterious(0) probably_damaging(0.989) TCGA-27-1831-01 7 55211080 55211080 G A EGFR Missense_Mutation p.R108K 0.43 deleterious(0) probably_damaging(0.998) TCGA-27-1831-01 7 55249022 55249022 G A EGFR Missense_Mutation p.V774M 0.04 deleterious(0) probably_damaging(0.998) TCGA-27-1831-01 7 99669056 99669056 G A ZNF3 Nonsense_Mutation p.Q351* 0.23 TCGA-27-1831-01 8 105025758 105025758 A T RIMS2 Nonsense_Mutation p.R1045* 0.35 TCGA-27-1831-01 8 121267573 121267573 G T COL14A1 Missense_Mutation p.R949S 0.37 deleterious(0) probably_damaging(0.999) TCGA-27-1831-01 9 21481272 21481272 C T IFNE Missense_Mutation p.R141K 0.51 tolerated(0.12) benign(0.354) TCGA-27-1831-01 X 101818277 101818277 C T NXF4 RNA 0.77 TCGA-27-1831-01 X 1484071 1484071 C T IL3RA Missense_Mutation p.T267M 0.32 deleterious(0.01) possibly_damaging(0.854) TCGA-27-1831-01 X 84349151 84349151 A - SATL1 Frame_Shift_Del p.V620Afs*63 0.41 TCGA-27-1832-01 11 113688486 113688486 T C USP28 Missense_Mutation p.S453G 0.33 deleterious(0.01) possibly_damaging(0.507) TCGA-27-1832-01 11 59947358 59947358 G A MS4A6A Silent p.T104T 0.28 TCGA-27-1832-01 12 110236625 110236625 G A TRPV4 Missense_Mutation p.R316C 0.30 deleterious(0.01) probably_damaging(0.976) TCGA-27-1832-01 12 125599073 125599073 C A AACS Silent p.T322T 0.22 TCGA-27-1832-01 13 113793675 113793675 C T F10 Silent p.G87G 0.17 TCGA-27-1832-01 13 98666352 98666352 C T IPO5 Missense_Mutation p.R755C 0.11 deleterious(0) benign(0.03) TCGA-27-1832-01 14 23245049 23245049 C T SLC7A7 Missense_Mutation p.A331T 0.40 deleterious(0.04) possibly_damaging(0.904) TCGA-27-1832-01 14 35871759 35871759 C A NFKBIA Missense_Mutation p.Q249H 0.06 tolerated(0.06) probably_damaging(0.985) TCGA-27-1832-01 14 89628671 89628671 T C FOXN3 3'UTR 0.42 TCGA-27-1832-01 16 1306641 1306641 C T TPSD1 Silent p.S69S 0.23 TCGA-27-1832-01 16 20975342 20975342 G A DNAH3 Silent p.D3288D 0.26 TCGA-27-1832-01 16 27761189 27761189 G A KIAA0556 Missense_Mutation p.V970I 0.33 deleterious(0.04) probably_damaging(0.93) TCGA-27-1832-01 16 31235634 31235634 C T TRIM72 Missense_Mutation p.A331V 0.38 deleterious(0.04) benign(0.036) TCGA-27-1832-01 17 18219935 18219935 G A SMCR8 Missense_Mutation p.A278T 0.25 tolerated(0.38) benign(0.002) TCGA-27-1832-01 17 65978523 65978523 G A BPTF 3'UTR 0.20 TCGA-27-1832-01 17 77710991 77710991 G A ENPP7 Missense_Mutation p.R393Q 0.21 tolerated(0.43) benign(0.002) TCGA-27-1832-01 17 79226299 79226302 TCTT - SLC38A10 Frame_Shift_Del p.E548Nfs*156 0.31 TCGA-27-1832-01 17 80020801 80020801 C T DUS1L Missense_Mutation p.R149H 0.25 deleterious(0) probably_damaging(0.999) TCGA-27-1832-01 18 14763986 14763986 C G ANKRD30B Missense_Mutation p.C374W 0.25 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-27-1832-01 18 65181103 65181103 T C DSEL Missense_Mutation p.N258S 0.32 tolerated(0.85) benign(0.009) TCGA-27-1832-01 19 51330985 51330985 G A KLK15 Missense_Mutation p.R44C 0.21 deleterious(0) probably_damaging(0.976) TCGA-27-1832-01 1 40319535 40319535 T C TRIT1 Intron 0.23 TCGA-27-1832-01 1 68904666 68904666 T A RPE65 Missense_Mutation p.E319D 0.07 deleterious(0) possibly_damaging(0.847) TCGA-27-1832-01 21 45113183 45113183 A C RRP1B Silent p.S732S 0.29 TCGA-27-1832-01 22 32546408 32546408 C T C22orf42 Silent p.S184S 0.25 TCGA-27-1832-01 22 37469590 37469590 C T TMPRSS6 Missense_Mutation p.E522K 0.31 deleterious(0) probably_damaging(0.973) TCGA-27-1832-01 2 101620760 101620761 TG - RPL31 Intron 0.19 TCGA-27-1832-01 2 189918184 189918184 C T COL5A2 Missense_Mutation p.G840E 0.28 unknown(0) TCGA-27-1832-01 2 191769831 191769831 A T GLS Missense_Mutation p.H306L 0.05 deleterious(0) possibly_damaging(0.793) TCGA-27-1832-01 2 211441119 211441119 A G CPS1 Missense_Mutation p.M102V 0.30 tolerated(0.06) benign(0.076) TCGA-27-1832-01 2 50847197 50847197 G A NRXN1 Missense_Mutation p.S468L 0.28 deleterious(0.03) probably_damaging(0.983) TCGA-27-1832-01 4 56875926 56875926 C T CEP135 Nonsense_Mutation p.R788* 0.28 TCGA-27-1832-01 4 85657415 85657415 G A WDFY3 Missense_Mutation p.R2275C 0.22 deleterious(0) possibly_damaging(0.776) TCGA-27-1832-01 5 140167207 140167207 G A PCDHA1 Silent p.E444E 0.26 TCGA-27-1832-01 6 31560625 31560625 G A NCR3 5'UTR 0.42 TCGA-27-1832-01 7 138440516 138440516 G T ATP6V0A4 Missense_Mutation p.T245N 0.15 tolerated(0.07) possibly_damaging(0.864) TCGA-27-1832-01 7 33138995 33138995 G A RP9 Silent p.H79H 0.15 TCGA-27-1832-01 7 55752973 55752973 C T RNU6-389P 5'Flank 0.23 TCGA-27-1832-01 7 76796979 76796979 G A CCDC146 5'UTR 0.11 TCGA-27-1832-01 7 86998729 86998729 G T CROT Silent p.L223L 0.20 TCGA-27-1832-01 9 132848732 132848732 A G GPR107 Missense_Mutation p.N200D 0.24 tolerated(0.77) benign(0.001) TCGA-27-1832-01 9 35045866 35045866 G C C9orf131 Nonstop_Mutation p.*1080Yext*5 0.24 TCGA-27-1832-01 9 35045873 35045873 G C C9orf131 3'UTR 0.24 TCGA-27-1832-01 9 39099958 39099959 - C CNTNAP3 Frame_Shift_Ins p.V982Gfs*4 0.20 TCGA-27-1832-01 X 139865904 139865904 C T CDR1 Missense_Mutation p.G210R 0.18 tolerated(0.39) probably_damaging(0.98) TCGA-27-1832-01 X 46918293 46918293 G C JADE3 Missense_Mutation p.Q762H 0.24 deleterious_low_confidence(0.04) possibly_damaging(0.718) TCGA-27-1832-01 X 7194035 7194035 G A STS Missense_Mutation p.V289M 0.08 deleterious(0.01) probably_damaging(0.952) TCGA-27-1833-01 10 101147663 101147663 C T CNNM1 Silent p.D809D 0.70 TCGA-27-1833-01 10 28345469 28345469 T C MPP7 Silent p.T497T 0.21 TCGA-27-1833-01 10 50943387 50943387 G A OGDHL Missense_Mutation p.R974W 0.62 deleterious(0) probably_damaging(1) TCGA-27-1833-01 10 52596064 52596064 C T A1CF Missense_Mutation p.R133H 0.63 deleterious(0) probably_damaging(0.999) TCGA-27-1833-01 11 55432767 55432767 T A OR4C6 Missense_Mutation p.L42H 0.45 deleterious_low_confidence(0) possibly_damaging(0.898) TCGA-27-1833-01 11 57583805 57583805 G A CTNND1 3'UTR 0.28 TCGA-27-1833-01 11 60687272 60687272 G A TMEM109 Missense_Mutation p.R36H 0.36 tolerated(1) benign(0) TCGA-27-1833-01 11 62561731 62561731 T C NXF1 Missense_Mutation p.K587E 0.41 deleterious(0) probably_damaging(0.967) TCGA-27-1833-01 11 6654846 6654846 C T DCHS1 Missense_Mutation p.R751Q 0.50 tolerated(0.24) benign(0.015) TCGA-27-1833-01 12 10005834 10005834 G T CLEC2B 3'UTR 0.35 TCGA-27-1833-01 12 21229466 21229466 C T SLCO1B7 Nonsense_Mutation p.R563* 0.36 TCGA-27-1833-01 12 57642900 57642900 G A STAC3 Silent p.N86N 0.29 TCGA-27-1833-01 12 6601362 6601362 C T MRPL51 3'UTR 0.31 TCGA-27-1833-01 13 23908788 23908788 G T SACS Missense_Mutation p.T3076N 0.43 probably_damaging(0.994) TCGA-27-1833-01 14 106306865 106306865 G A IGHD Missense_Mutation p.P322S 0.36 tolerated(0.12) benign(0) TCGA-27-1833-01 14 65270332 65270332 C T SPTB Missense_Mutation p.R156H 0.38 deleterious(0) probably_damaging(1) TCGA-27-1833-01 15 100230497 100230497 G A MEF2A Missense_Mutation p.G243D 0.42 deleterious(0.03) possibly_damaging(0.483) TCGA-27-1833-01 15 53992060 53992060 A T WDR72 Missense_Mutation p.L551Q 0.37 deleterious(0) probably_damaging(0.982) TCGA-27-1833-01 16 1255218 1255218 C A CACNA1H Nonsense_Mutation p.Y852* 0.35 TCGA-27-1833-01 16 1816093 1816093 G A MAPK8IP3 Missense_Mutation p.R859Q 0.33 tolerated(0.62) benign(0.009) TCGA-27-1833-01 16 23200784 23200784 G A SCNN1G Missense_Mutation p.R137H 0.45 tolerated(0.09) possibly_damaging(0.896) TCGA-27-1833-01 16 27357789 27357789 G A IL4R Silent p.V121V 0.32 TCGA-27-1833-01 17 11684359 11684359 G A DNAH9 Missense_Mutation p.G2529D 0.39 probably_damaging(0.992) TCGA-27-1833-01 17 14140072 14140072 G A CDRT15 Nonsense_Mutation p.R27* 0.35 TCGA-27-1833-01 17 34416095 34416095 G A CCL3 Nonsense_Mutation p.R68* 0.09 TCGA-27-1833-01 17 39680449 39680449 G T KRT19 Missense_Mutation p.D298E 0.37 tolerated(1) benign(0.09) TCGA-27-1833-01 17 47115648 47115648 C T IGF2BP1 Missense_Mutation p.R174W 0.16 deleterious(0) benign(0.246) TCGA-27-1833-01 17 66265091 66265091 G T SLC16A6 3'UTR 0.49 TCGA-27-1833-01 17 70117782 70117782 T G SOX9 Missense_Mutation p.Y84D 0.45 deleterious(0) probably_damaging(0.999) TCGA-27-1833-01 18 5406824 5406824 G A EPB41L3 Silent p.A767A 0.36 TCGA-27-1833-01 18 61569672 61569672 G A SERPINB2 Missense_Mutation p.R238H 0.34 tolerated(0.34) benign(0.002) TCGA-27-1833-01 19 10415630 10415630 G A ZGLP1 3'UTR 0.18 TCGA-27-1833-01 19 13410023 13410023 C T CACNA1A Silent p.T808T 0.23 TCGA-27-1833-01 19 40368357 40368357 C T FCGBP Missense_Mutation p.A4331T 0.13 possibly_damaging(0.545) TCGA-27-1833-01 19 41932065 41932066 TG - B3GNT8 Nonsense_Mutation p.Y206* 0.29 TCGA-27-1833-01 19 46094683 46094683 C T GPR4 Missense_Mutation p.A148T 0.30 tolerated(0.45) probably_damaging(0.98) TCGA-27-1833-01 19 46094825 46094825 A G GPR4 Silent p.N100N 0.23 TCGA-27-1833-01 19 48807021 48807021 C T CCDC114 Missense_Mutation p.V255I 0.28 tolerated(0.07) benign(0.031) TCGA-27-1833-01 19 51728525 51728525 C T CD33 Missense_Mutation p.T30M 0.05 tolerated(0.17) possibly_damaging(0.683) TCGA-27-1833-01 19 51729331 51729331 G A CD33 Missense_Mutation p.V231I 0.23 deleterious(0.03) benign(0.339) TCGA-27-1833-01 19 55239112 55239112 G T KIR3DL3 Missense_Mutation p.G131C 0.39 deleterious(0.03) probably_damaging(0.997) TCGA-27-1833-01 19 56903147 56903147 A G ZNF582 5'UTR 0.29 TCGA-27-1833-01 1 15392326 15392326 G A KAZN Intron 0.38 TCGA-27-1833-01 1 166904584 166904584 A T ILDR2 Missense_Mutation p.H278Q 0.35 tolerated(0.36) probably_damaging(0.996) TCGA-27-1833-01 1 38227109 38227109 G A EPHA10 Missense_Mutation p.A273V 0.39 tolerated(0.12) probably_damaging(0.997) TCGA-27-1833-01 1 74507363 74507363 G A LRRIQ3 Nonsense_Mutation p.R418* 0.37 TCGA-27-1833-01 20 43851621 43851621 G A SEMG2 Missense_Mutation p.V450I 0.31 tolerated(0.59) benign(0.299) TCGA-27-1833-01 20 46292214 46292214 G A SULF2 Missense_Mutation p.T737M 0.31 deleterious(0) probably_damaging(0.973) TCGA-27-1833-01 20 50803594 50803594 C T ZFP64 Silent p.T21T 0.10 TCGA-27-1833-01 20 60921843 60921843 G A LAMA5 Silent p.Y362Y 0.06 TCGA-27-1833-01 21 19770222 19770222 A G TMPRSS15 Silent p.Y106Y 0.56 TCGA-27-1833-01 21 43161519 43161519 C T RIPK4 Missense_Mutation p.A612T 0.42 deleterious(0.04) probably_damaging(0.988) TCGA-27-1833-01 22 43089430 43089430 G A A4GALT Silent p.D176D 0.48 TCGA-27-1833-01 22 51159629 51159629 C T SHANK3 Missense_Mutation p.A1139V 0.52 benign(0.003) TCGA-27-1833-01 2 211481222 211481222 C T CPS1 Missense_Mutation p.R888C 0.46 deleterious(0.02) possibly_damaging(0.711) TCGA-27-1833-01 2 232326477 232326477 G T NCL Silent p.I129I 0.21 TCGA-27-1833-01 2 235950763 235950763 C T SH3BP4 Silent p.Y450Y 0.38 TCGA-27-1833-01 2 242683167 242683167 C T D2HGDH Silent p.N207N 0.32 TCGA-27-1833-01 2 33952147 33952147 G A AC009499.1 Intron 0.39 TCGA-27-1833-01 2 89197197 89197197 G A IGKV5-2 Missense_Mutation p.R81Q 0.08 deleterious(0.03) benign(0.041) TCGA-27-1833-01 3 1418745 1418745 G A CNTN6 Missense_Mutation p.V718I 0.40 tolerated(0.07) benign(0.008) TCGA-27-1833-01 3 25215958 25215958 C A AC133680.1 3'Flank 0.40 TCGA-27-1833-01 3 42916827 42916827 G A CYP8B1 Missense_Mutation p.A161V 0.33 tolerated(0.15) possibly_damaging(0.686) TCGA-27-1833-01 3 48348476 48348476 G A SPINK8 3'UTR 0.35 TCGA-27-1833-01 4 1670479 1670479 C T FAM53A 5'UTR 0.44 TCGA-27-1833-01 4 183959052 183959052 C T FAM92A1P2 RNA 0.43 TCGA-27-1833-01 4 1955109 1955109 A G WHSC1 Silent p.V732V 0.42 TCGA-27-1833-01 5 102360910 102360911 AG - PAM Frame_Shift_Del p.K855Tfs*45 0.31 TCGA-27-1833-01 6 111912560 111912560 A G TRAF3IP2 Missense_Mutation p.Y244H 0.33 tolerated(0.27) benign(0.033) TCGA-27-1833-01 6 1395164 1395164 C T FOXF2 3'UTR 0.47 TCGA-27-1833-01 6 51523917 51523917 C T PKHD1 Silent p.S3669S 0.11 TCGA-27-1833-01 7 106513286 106513286 C T PIK3CG Silent p.H730H 0.36 TCGA-27-1833-01 7 127255659 127255659 G A PAX4 5'UTR 0.36 TCGA-27-1833-01 7 134260192 134260192 C T AKR1B15 Silent p.D178D 0.30 TCGA-27-1833-01 7 142013390 142013390 G A TRBV4-1 Missense_Mutation p.R82H 0.28 tolerated(0.06) benign(0.096) TCGA-27-1833-01 7 151877846 151877846 T C KMT2C Missense_Mutation p.T2367A 0.20 possibly_damaging(0.688) TCGA-27-1833-01 7 35130052 35130052 C T DPY19L2P1 RNA 0.28 TCGA-27-1833-01 7 94953757 94953757 C A PON1 Missense_Mutation p.G11W 0.14 deleterious(0.01) probably_damaging(0.989) TCGA-27-1833-01 7 98580929 98580935 AACGCAG - TRRAP Frame_Shift_Del p.N2950Afs*16 0.23 TCGA-27-1833-01 8 142476586 142476586 G A MROH5 3'UTR 0.36 TCGA-27-1833-01 8 145537533 145537533 C T HSF1 Missense_Mutation p.P425S 0.05 tolerated(0.72) benign(0.028) TCGA-27-1833-01 9 140201615 140201615 G A EXD3 Silent p.A806A 0.45 TCGA-27-1833-01 X 102334798 102334798 C T NXF3 Silent p.Q351Q 0.46 TCGA-27-1833-01 X 141290543 141290543 G T MAGEC2 3'UTR 0.16 TCGA-27-1833-01 X 146307446 146307446 C T MIR513A2 RNA 0.41 TCGA-27-1833-01 X 30260469 30260469 G A MAGEB4 Missense_Mutation p.A73T 0.46 tolerated(0.05) benign(0.395) TCGA-27-1833-01 X 48923077 48923077 C T CCDC120 Missense_Mutation p.R259W 0.42 deleterious(0) probably_damaging(0.999) TCGA-27-1833-01 X 49047787 49047787 T C SYP Intron 0.27 TCGA-27-1833-01 X 79938109 79938109 G A BRWD3 Nonsense_Mutation p.R1418* 0.55 TCGA-27-1834-01 10 14564008 14564008 G C FAM107B Missense_Mutation p.P222A 0.56 tolerated(0.11) probably_damaging(0.981) TCGA-27-1834-01 10 89720676 89720676 A G PTEN Missense_Mutation p.N276S 0.46 deleterious(0) probably_damaging(0.996) TCGA-27-1834-01 11 132527102 132527102 T A OPCML Missense_Mutation p.T94S 0.05 tolerated(0.36) possibly_damaging(0.679) TCGA-27-1834-01 11 21135236 21135236 C T NELL1 Missense_Mutation p.R468C 0.31 tolerated(0.08) benign(0.178) TCGA-27-1834-01 11 56258155 56258155 T A OR5M8 Missense_Mutation p.E231V 0.30 deleterious(0) possibly_damaging(0.772) TCGA-27-1834-01 11 58601790 58601790 C A GLYATL2 3'UTR 0.42 TCGA-27-1834-01 11 60075609 60075609 C T MS4A4A Silent p.H226H 0.37 TCGA-27-1834-01 11 66359836 66359836 G A CCDC87 Silent p.F217F 0.37 TCGA-27-1834-01 11 99827702 99827703 - TCCTTAGTCC CNTN5 Frame_Shift_Ins p.T285* 0.12 TCGA-27-1834-01 12 104359813 104359813 G A TDG 5'UTR 0.50 TCGA-27-1834-01 12 110023885 110023885 A G MVK Missense_Mutation p.I196V 0.33 deleterious(0) possibly_damaging(0.589) TCGA-27-1834-01 12 130647861 130647861 A T FZD10 Missense_Mutation p.N125I 0.32 deleterious(0) benign(0.17) TCGA-27-1834-01 13 53624555 53624555 T A OLFM4 Silent p.V394V 0.64 TCGA-27-1834-01 13 95364302 95364302 A G SOX21 Translation_Start_Site p.M1? 0.31 deleterious(0) possibly_damaging(0.833) TCGA-27-1834-01 14 102792551 102792551 C T ZNF839 Missense_Mutation p.P173L 0.59 deleterious(0.02) probably_damaging(0.992) TCGA-27-1834-01 14 22102705 22102705 C T OR10G2 Silent p.P98P 0.55 TCGA-27-1834-01 14 38060669 38060669 G A FOXA1 Silent p.G440G 0.54 TCGA-27-1834-01 14 77941880 77941880 G A ISM2 3'UTR 0.52 TCGA-27-1834-01 15 25479300 25479300 C A SNORD115-33 3'Flank 0.06 TCGA-27-1834-01 16 21261689 21261689 C T ANKS4B Missense_Mutation p.R268C 0.50 deleterious(0.02) probably_damaging(0.946) TCGA-27-1834-01 16 53337839 53337839 C T CHD9 Missense_Mutation p.A1974V 0.28 possibly_damaging(0.801) TCGA-27-1834-01 17 27308674 27308674 G A SEZ6 Missense_Mutation p.P147S 0.42 tolerated(0.14) benign(0.011) TCGA-27-1834-01 17 58678099 58678099 C T PPM1D Silent p.G108G 0.08 TCGA-27-1834-01 17 70644980 70644980 G A SLC39A11 Silent p.Y304Y 0.05 TCGA-27-1834-01 17 76510935 76510935 G A DNAH17 Missense_Mutation p.T1341M 0.29 possibly_damaging(0.554) TCGA-27-1834-01 19 41597775 41597775 C T CYP2A13 Missense_Mutation p.R265W 0.06 deleterious(0) benign(0.122) TCGA-27-1834-01 1 100382185 100382185 G A AGL Missense_Mutation p.R1460H 0.35 deleterious(0) probably_damaging(0.992) TCGA-27-1834-01 1 115143493 115143493 G A DENND2C Missense_Mutation p.A635V 0.28 deleterious(0) probably_damaging(1) TCGA-27-1834-01 1 1275475 1275475 C T DVL1 Missense_Mutation p.M284I 0.30 deleterious(0) benign(0.053) TCGA-27-1834-01 1 152276824 152276824 G A FLG Missense_Mutation p.A3513V 0.35 unknown(0) TCGA-27-1834-01 1 152382849 152382849 C A CRNN Missense_Mutation p.G237C 0.35 deleterious(0) probably_damaging(0.983) TCGA-27-1834-01 1 46651368 46651368 C T TSPAN1 3'UTR 0.22 TCGA-27-1834-01 20 54978729 54978729 G A CSTF1 Silent p.T414T 0.38 TCGA-27-1834-01 21 47545941 47545941 C T COL6A2 Missense_Mutation p.R738W 0.42 deleterious(0) probably_damaging(0.999) TCGA-27-1834-01 2 152492770 152492770 C T NEB Missense_Mutation p.A3025T 0.07 probably_damaging(0.998) TCGA-27-1834-01 2 157439407 157439407 G A GPD2 Missense_Mutation p.D721N 0.16 tolerated(0.1) benign(0.022) TCGA-27-1834-01 2 168098387 168098387 C T XIRP2 Silent p.D381D 0.28 TCGA-27-1834-01 2 203846966 203846966 T C CARF Missense_Mutation p.C621R 0.13 tolerated_low_confidence(0.05) possibly_damaging(0.653) TCGA-27-1834-01 2 222428934 222428934 C T EPHA4 Missense_Mutation p.V114I 0.37 tolerated(0.11) probably_damaging(0.939) TCGA-27-1834-01 2 239140954 239140954 G C AC016757.3 5'Flank 0.12 TCGA-27-1834-01 2 48958384 48958384 A T LHCGR Missense_Mutation p.L72H 0.18 deleterious(0) probably_damaging(0.989) TCGA-27-1834-01 2 99636771 99636771 C T TSGA10 Missense_Mutation p.E597K 0.09 deleterious(0.04) possibly_damaging(0.58) TCGA-27-1834-01 3 108189636 108189636 A G MYH15 Missense_Mutation p.L451P 0.08 deleterious(0) probably_damaging(1) TCGA-27-1834-01 3 111604066 111604066 G A PHLDB2 Missense_Mutation p.R381K 0.41 tolerated(0.07) benign(0.349) TCGA-27-1834-01 3 12881707 12881707 G A RPL32 Silent p.P10P 0.11 TCGA-27-1834-01 3 138763141 138763141 C T PRR23C Missense_Mutation p.V108I 0.35 tolerated(0.19) benign(0.012) TCGA-27-1834-01 3 152018056 152018056 G A MBNL1 Missense_Mutation p.G25E 0.29 deleterious(0) possibly_damaging(0.869) TCGA-27-1834-01 3 152132751 152132751 T A MBNL1 Missense_Mutation p.C66S 0.04 deleterious(0) possibly_damaging(0.622) TCGA-27-1834-01 3 183960423 183960423 T G ALG3 Missense_Mutation p.Y399S 0.15 deleterious(0) probably_damaging(0.996) TCGA-27-1834-01 3 48697393 48697393 C T CELSR3 Missense_Mutation p.R892H 0.49 deleterious(0) probably_damaging(1) TCGA-27-1834-01 4 103730850 103730850 C T UBE2D3 Nonsense_Mutation p.W35* 0.23 TCGA-27-1834-01 4 111474494 111474494 C T ENPEP Missense_Mutation p.T842M 0.25 deleterious(0.04) possibly_damaging(0.901) TCGA-27-1834-01 4 149357361 149357361 C T NR3C2 Missense_Mutation p.A218T 0.13 tolerated_low_confidence(0.3) benign(0) TCGA-27-1834-01 4 79400664 79400664 G A FRAS1 Silent p.G2745G 0.33 TCGA-27-1834-01 5 147516699 147516699 C T SPINK5 3'UTR 0.58 TCGA-27-1834-01 5 157078493 157078493 G A SOX30 Silent p.G198G 0.47 TCGA-27-1834-01 6 30861171 30861171 C T DDR1 Missense_Mutation p.R440W 0.29 deleterious(0.02) probably_damaging(0.992) TCGA-27-1834-01 6 56483402 56483402 A G DST Intron 0.11 TCGA-27-1834-01 7 100552564 100552564 G A MUC3A Missense_Mutation p.V439I 0.14 tolerated(0.47) possibly_damaging(0.618) TCGA-27-1834-01 7 100701517 100701517 C T MUC17 3'UTR 0.44 TCGA-27-1834-01 7 122341878 122341878 C T RNF148 3'UTR 0.23 TCGA-27-1834-01 7 143043325 143043325 G A CLCN1 Silent p.P755P 0.12 TCGA-27-1834-01 7 143701705 143701705 A G OR6B1 Missense_Mutation p.I206V 0.28 tolerated(0.45) benign(0.035) TCGA-27-1834-01 7 23509595 23509595 C T IGF2BP3 Silent p.P45P 0.24 TCGA-27-1834-01 7 80117947 80117947 G A GNAT3 Silent p.F69F 0.19 TCGA-27-1834-01 7 98554147 98554147 C T TRRAP Silent p.A2067A 0.06 TCGA-27-1834-01 7 98567836 98567836 C T TRRAP Silent p.H2531H 0.05 TCGA-27-1834-01 8 143994857 143994857 G A CYP11B2 Missense_Mutation p.P322L 0.23 deleterious(0) probably_damaging(0.982) TCGA-27-1834-01 8 21983183 21983183 G T HR Missense_Mutation p.L490I 0.15 tolerated(0.42) benign(0.15) TCGA-27-1834-01 9 125281885 125281885 G A OR1J4 Missense_Mutation p.A156T 0.71 deleterious_low_confidence(0.01) benign(0.367) TCGA-27-1834-01 9 138387358 138387358 G A C9orf116 Missense_Mutation p.T109I 0.74 deleterious(0) probably_damaging(0.967) TCGA-27-1834-01 9 21077465 21077465 C A IFNB1 Missense_Mutation p.G135V 0.72 tolerated(0.3) benign(0.02) TCGA-27-1834-01 9 96291872 96291872 A G FAM120A Intron 0.80 TCGA-27-1834-01 X 1407665 1407665 C T CSF2RA Silent p.T119T 0.21 TCGA-27-1835-01 10 105752828 105752828 A G SLK Missense_Mutation p.I151V 0.76 tolerated(0.09) possibly_damaging(0.684) TCGA-27-1835-01 11 1104319 1104319 C T MUC2 3'UTR 0.38 TCGA-27-1835-01 11 123909464 123909464 G A OR10G7 Missense_Mutation p.T82I 0.24 tolerated(0.3) benign(0.012) TCGA-27-1835-01 11 314342 314342 G A IFITM1 Missense_Mutation p.A58T 0.45 tolerated(0.09) benign(0) TCGA-27-1835-01 11 47346157 47346157 C T MADD Intron 0.46 TCGA-27-1835-01 11 55944236 55944236 T A OR5J2 Nonsense_Mutation p.L48* 0.40 TCGA-27-1835-01 11 65048610 65048610 C A POLA2 Missense_Mutation p.P298T 0.39 deleterious(0) probably_damaging(0.95) TCGA-27-1835-01 11 7334771 7334771 C T SYT9 Missense_Mutation p.R215W 0.40 deleterious(0.01) possibly_damaging(0.698) TCGA-27-1835-01 12 112622744 112622744 G A HECTD4 Silent p.S3196S 0.26 TCGA-27-1835-01 12 8211864 8211864 G A C3AR1 Silent p.Y306Y 0.46 TCGA-27-1835-01 13 61986876 61986876 C T PCDH20 Silent p.A452A 0.04 TCGA-27-1835-01 14 106866431 106866431 G A IGHV3-38 Missense_Mutation p.T108M 0.38 tolerated_low_confidence(0.11) possibly_damaging(0.51) TCGA-27-1835-01 14 74991895 74991895 C G LTBP2 Missense_Mutation p.G821A 0.44 tolerated(0.8) benign(0.08) TCGA-27-1835-01 14 74991927 74991927 C G LTBP2 Silent p.G810G 0.45 TCGA-27-1835-01 14 81744671 81744671 G C STON2 Missense_Mutation p.I328M 0.16 deleterious(0) probably_damaging(0.996) TCGA-27-1835-01 14 93651787 93651787 T A TMEM251 Missense_Mutation p.S19T 0.39 tolerated_low_confidence(0.36) benign(0.04) TCGA-27-1835-01 16 67683828 67683828 C T RLTPR Missense_Mutation p.A680V 0.50 deleterious(0) possibly_damaging(0.688) TCGA-27-1835-01 17 18682309 18682309 A C FBXW10 Missense_Mutation p.M953L 0.48 tolerated(0.06) benign(0.016) TCGA-27-1835-01 17 37265501 37265501 C T PLXDC1 Silent p.S133S 0.41 TCGA-27-1835-01 17 62036660 62036660 C T SCN4A Missense_Mutation p.V662I 0.41 deleterious(0.04) possibly_damaging(0.884) TCGA-27-1835-01 17 7578203 7578203 C T TP53 Missense_Mutation p.V216M 0.74 deleterious(0) probably_damaging(1) TCGA-27-1835-01 19 5587954 5587954 C T SAFB2 Missense_Mutation p.E855K 0.17 deleterious(0.01) possibly_damaging(0.636) TCGA-27-1835-01 19 746653 746653 G A PALM Missense_Mutation p.A335T 0.58 tolerated(0.5) benign(0.142) TCGA-27-1835-01 1 150131552 150131552 C T PLEKHO1 Missense_Mutation p.T355M 0.40 deleterious(0.01) possibly_damaging(0.891) TCGA-27-1835-01 1 152083688 152083688 C G TCHH Missense_Mutation p.E669Q 0.50 unknown(0) TCGA-27-1835-01 1 154110601 154110601 C A NUP210L Missense_Mutation p.M277I 0.42 tolerated(1) benign(0.002) TCGA-27-1835-01 1 158626393 158626393 G C SPTA1 Missense_Mutation p.D953E 0.35 tolerated(0.16) benign(0.034) TCGA-27-1835-01 1 158632602 158632602 C T SPTA1 Missense_Mutation p.R785Q 0.42 deleterious(0.05) probably_damaging(0.999) TCGA-27-1835-01 1 209804029 209804029 G A LAMB3 Missense_Mutation p.R292C 0.38 deleterious(0) probably_damaging(0.982) TCGA-27-1835-01 1 232615447 232615447 T C SIPA1L2 Missense_Mutation p.T671A 0.38 deleterious(0.02) probably_damaging(0.988) TCGA-27-1835-01 1 233515030 233515030 C T MLK4 Nonsense_Mutation p.R760* 0.39 TCGA-27-1835-01 1 248402638 248402638 G T OR2M4 Missense_Mutation p.M136I 0.40 deleterious(0.01) benign(0.033) TCGA-27-1835-01 20 1161392 1161392 G A TMEM74B 3'UTR 0.29 TCGA-27-1835-01 20 41306569 41306569 G A PTPRT Nonsense_Mutation p.R364* 0.32 TCGA-27-1835-01 20 43927042 43927042 A T MATN4 Silent p.P398P 0.32 TCGA-27-1835-01 20 43933002 43933002 G A MATN4 Missense_Mutation p.A170V 0.30 probably_damaging(0.999) TCGA-27-1835-01 20 44641083 44641083 G A MMP9 Missense_Mutation p.V398M 0.28 deleterious(0) probably_damaging(0.999) TCGA-27-1835-01 20 60921978 60921978 C T LAMA5 Missense_Mutation p.E355K 0.33 probably_damaging(0.984) TCGA-27-1835-01 20 860425 860425 C T ANGPT4 Missense_Mutation p.V340M 0.23 deleterious(0.04) benign(0.301) TCGA-27-1835-01 22 50928230 50928230 G A MIOX Missense_Mutation p.R268Q 0.60 tolerated(0.11) benign(0.004) TCGA-27-1835-01 2 108999906 108999906 A T SULT1C4 Silent p.G185G 0.38 TCGA-27-1835-01 2 154334770 154334770 C T RPRM Missense_Mutation p.V104M 0.24 deleterious_low_confidence(0.01) probably_damaging(0.934) TCGA-27-1835-01 2 192011451 192011451 G A STAT4 Missense_Mutation p.T54M 0.41 tolerated(0.15) possibly_damaging(0.576) TCGA-27-1835-01 2 204599561 204599561 C T CD28 Missense_Mutation p.R197C 0.49 deleterious(0) probably_damaging(0.937) TCGA-27-1835-01 2 27670769 27670769 C A IFT172 Missense_Mutation p.R1483S 0.39 deleterious(0.01) possibly_damaging(0.686) TCGA-27-1835-01 2 30959413 30959413 G T CAPN13 Missense_Mutation p.Q560K 0.43 tolerated(1) benign(0.013) TCGA-27-1835-01 2 38202445 38202445 T C RMDN2 Missense_Mutation p.Y418H 0.44 deleterious(0.04) probably_damaging(0.988) TCGA-27-1835-01 3 43381834 43381834 A C SNRK Missense_Mutation p.I263L 0.39 deleterious(0.01) possibly_damaging(0.838) TCGA-27-1835-01 4 121720881 121720884 CAAT - PRDM5 Frame_Shift_Del p.D321Vfs*5 0.36 TCGA-27-1835-01 4 1818642 1818642 C T LETM1 Splice_Site p.X582_splice 0.81 TCGA-27-1835-01 4 1978378 1978378 C A WHSC1 Silent p.S1266S 0.88 TCGA-27-1835-01 4 2692666 2692667 CA - FAM193A Frame_Shift_Del p.F633Lfs*12 0.40 TCGA-27-1835-01 4 39450326 39450329 AGAC - KLB 3'UTR 0.45 TCGA-27-1835-01 4 53468067 53468067 C G USP46 Silent p.L292L 0.39 TCGA-27-1835-01 4 71024299 71024299 G A C4orf40 Silent p.P110P 0.42 TCGA-27-1835-01 5 128957961 128957961 C G ADAMTS19 Missense_Mutation p.L558V 0.41 tolerated(0.08) possibly_damaging(0.45) TCGA-27-1835-01 5 161116169 161116169 C A GABRA6 Missense_Mutation p.T147N 0.35 deleterious(0) probably_damaging(0.999) TCGA-27-1835-01 5 176943782 176943782 C G DDX41 Missense_Mutation p.E28Q 0.09 tolerated(0.19) benign(0.032) TCGA-27-1835-01 5 89981612 89981612 G A GPR98 Missense_Mutation p.R2097H 0.39 probably_damaging(0.964) TCGA-27-1835-01 6 111498841 111498841 T C SLC16A10 Silent p.F305F 0.46 TCGA-27-1835-01 6 116938051 116938051 G T RSPH4A Nonsense_Mutation p.E89* 0.33 TCGA-27-1835-01 6 117244279 117244279 C A RFX6 Missense_Mutation p.Q483K 0.32 tolerated(0.23) possibly_damaging(0.599) TCGA-27-1835-01 6 131602958 131602958 T G AKAP7 3'UTR 0.44 TCGA-27-1835-01 6 170599203 170599203 G A DLL1 Silent p.L9L 0.41 TCGA-27-1835-01 6 46826114 46826114 C T GPR116 Missense_Mutation p.A1176T 0.40 deleterious(0) benign(0.327) TCGA-27-1835-01 6 90362720 90362720 C - MDN1 Frame_Shift_Del p.I5273Sfs*6 0.35 TCGA-27-1835-01 6 91281453 91281453 A G MAP3K7 Missense_Mutation p.I65T 0.41 deleterious(0) probably_damaging(0.988) TCGA-27-1835-01 7 100681846 100681846 C T MUC17 Silent p.D2383D 0.27 TCGA-27-1835-01 7 106508257 106508257 C T PIK3CG Missense_Mutation p.A84V 0.38 tolerated(0.52) benign(0.001) TCGA-27-1835-01 7 27186942 27186942 T G HOXA6 Missense_Mutation p.M143L 0.25 deleterious(0.03) benign(0.267) TCGA-27-1835-01 7 37903981 37903981 G C NME8 Silent p.P162P 0.17 TCGA-27-1835-01 7 99693696 99693696 C T MCM7 Silent p.G432G 0.24 TCGA-27-1835-01 8 25766052 25766052 G T EBF2 Missense_Mutation p.L191I 0.39 deleterious(0.01) probably_damaging(0.934) TCGA-27-1835-01 9 111618206 111618206 G A ACTL7B Missense_Mutation p.A2V 0.48 deleterious_low_confidence(0) probably_damaging(0.994) TCGA-27-1835-01 9 137620520 137620520 C T COL5A1 Missense_Mutation p.T264M 0.34 probably_damaging(0.932) TCGA-27-1835-01 9 21367395 21367395 G - IFNA13 3'UTR 0.35 TCGA-27-1835-01 9 21409787 21409787 G A IFNA8 3'UTR 0.48 TCGA-27-1835-01 9 75441788 75441789 - A TMC1 Frame_Shift_Ins p.N671Kfs*2 0.31 TCGA-27-1835-01 X 107407829 107407829 C A COL4A6 Splice_Site p.X1358_splice 0.33 TCGA-27-1835-01 X 141291591 141291591 C T MAGEC2 Silent p.L61L 0.47 TCGA-27-1835-01 X 20148634 20148634 G A EIF1AX Silent p.D143D 0.36 TCGA-27-1835-01 X 46359485 46359485 G T ZNF674 Silent p.I513I 0.37 TCGA-27-1835-01 X 47518408 47518408 C T UXT 5'UTR 0.45 TCGA-27-1835-01 X 48244855 48244855 T A SSX4 Missense_Mutation p.N82K 0.15 tolerated(0.09) possibly_damaging(0.589) TCGA-27-1835-01 X 70830591 70830591 A G ACRC Missense_Mutation p.S558G 0.35 unknown(0) TCGA-27-1835-01 X 71492579 71492579 C T RPS4X Missense_Mutation p.R245H 0.30 tolerated(0.32) benign(0.004) TCGA-27-1836-01 11 1094855 1094855 C T MUC2 Silent p.Y1981Y 0.36 TCGA-27-1836-01 11 67223870 67223870 C T CABP4 Silent p.T166T 0.35 TCGA-27-1836-01 12 49218469 49218469 C T CACNB3 Missense_Mutation p.S142F 0.27 deleterious(0) possibly_damaging(0.553) TCGA-27-1836-01 17 11672470 11672470 G A DNAH9 Missense_Mutation p.R2459H 0.24 probably_damaging(0.973) TCGA-27-1836-01 17 18167560 18167560 A G MIEF2 Missense_Mutation p.M294V 0.27 tolerated(1) benign(0) TCGA-27-1836-01 17 51900492 51900492 C T KIF2B Missense_Mutation p.A33V 0.26 tolerated(0.16) benign(0.07) TCGA-27-1836-01 17 7578217 7578217 G A TP53 Missense_Mutation p.T211I 0.22 deleterious(0.02) probably_damaging(0.96) TCGA-27-1836-01 17 77705154 77705154 G A ENPP7 Missense_Mutation p.G85S 0.11 deleterious(0.02) probably_damaging(1) TCGA-27-1836-01 19 22156724 22156724 C T ZNF208 Missense_Mutation p.C371Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-27-1836-01 19 3282231 3282231 C T CELF5 Silent p.N286N 0.33 TCGA-27-1836-01 19 49551595 49551595 C T CGB8 Missense_Mutation p.G17E 0.21 tolerated(0.15) benign(0.02) TCGA-27-1836-01 19 51466663 51466663 G A KLK6 Missense_Mutation p.R114C 0.27 deleterious(0.02) possibly_damaging(0.758) TCGA-27-1836-01 19 54598524 54598524 G A OSCAR 3'UTR 0.36 TCGA-27-1836-01 19 56320357 56320357 G A NLRP11 Missense_Mutation p.T540M 0.28 deleterious(0.02) benign(0.178) TCGA-27-1836-01 19 8809058 8809058 G A ACTL9 5'UTR 0.26 TCGA-27-1836-01 1 114500841 114500841 G A HIPK1 Missense_Mutation p.G637R 0.35 tolerated(0.33) benign(0.225) TCGA-27-1836-01 1 237777379 237777379 C T RYR2 Silent p.L1651L 0.31 TCGA-27-1836-01 1 248737350 248737350 C T OR2T34 Missense_Mutation p.A237T 0.31 deleterious(0.02) benign(0.002) TCGA-27-1836-01 1 45288988 45288988 C T PTCH2 Missense_Mutation p.V1062M 0.38 deleterious(0) probably_damaging(0.992) TCGA-27-1836-01 1 52260179 52260179 C T NRD1 Missense_Mutation p.G982S 0.33 tolerated(0.21) benign(0.141) TCGA-27-1836-01 20 61512320 61512320 G A DIDO1 Missense_Mutation p.P1663L 0.33 possibly_damaging(0.755) TCGA-27-1836-01 22 22786669 22786669 G T IGLV1-36 Silent p.L73L 0.29 TCGA-27-1836-01 22 31534350 31534350 C T PLA2G3 Missense_Mutation p.V232M 0.40 tolerated(0.14) possibly_damaging(0.73) TCGA-27-1836-01 22 43575872 43575872 C T TTLL12 Nonsense_Mutation p.W227* 0.25 TCGA-27-1836-01 22 46931874 46931874 G A CELSR1 Silent p.D398D 0.40 TCGA-27-1836-01 2 113764258 113764258 C T IL36A Missense_Mutation p.L70F 0.32 deleterious(0) possibly_damaging(0.53) TCGA-27-1836-01 2 211070506 211070506 A G ACADL Silent p.N206N 0.34 TCGA-27-1836-01 3 128181904 128181904 C T DNAJB8 Missense_Mutation p.R62H 0.28 deleterious(0) probably_damaging(0.999) TCGA-27-1836-01 3 160395695 160395695 G A ARL14 Silent p.A187A 0.29 TCGA-27-1836-01 3 186459456 186459456 G A KNG1 Missense_Mutation p.G424E 0.28 tolerated(0.34) benign(0.021) TCGA-27-1836-01 3 42676817 42676817 A G NKTR Silent p.A374A 0.40 TCGA-27-1836-01 3 78734960 78734960 G A ROBO1 Silent p.Y426Y 0.28 TCGA-27-1836-01 4 154625962 154625962 C T TLR2 Missense_Mutation p.P635S 0.28 tolerated(0.13) benign(0.341) TCGA-27-1836-01 4 69681966 69681966 C A UGT2B10 Missense_Mutation p.P77T 0.37 deleterious(0.05) possibly_damaging(0.517) TCGA-27-1836-01 5 106763058 106763058 G C EFNA5 Missense_Mutation p.T93S 0.38 tolerated(0.41) benign(0.023) TCGA-27-1836-01 5 154396474 154396474 G A KIF4B Missense_Mutation p.E1019K 0.30 tolerated(0.18) possibly_damaging(0.493) TCGA-27-1836-01 5 168176560 168176560 C T SLIT3 Missense_Mutation p.S685N 0.31 deleterious(0.01) probably_damaging(0.993) TCGA-27-1836-01 5 26902589 26902589 T A CDH9 Missense_Mutation p.I417L 0.29 tolerated(0.06) benign(0.109) TCGA-27-1836-01 5 35641735 35641735 C T SPEF2 Missense_Mutation p.R122C 0.31 deleterious(0) possibly_damaging(0.498) TCGA-27-1836-01 6 167571202 167571202 G C GPR31 Missense_Mutation p.L40V 0.24 tolerated(0.4) benign(0.038) TCGA-27-1836-01 6 17788096 17788097 AA - KIF13A Frame_Shift_Del p.L1091Kfs*13 0.25 TCGA-27-1836-01 6 33143356 33143356 C T COL11A2 Missense_Mutation p.E705K 0.28 possibly_damaging(0.502) TCGA-27-1836-01 8 145700407 145700407 C T FOXH1 Silent p.K104K 0.27 TCGA-27-1836-01 9 130710434 130710434 C T FAM102A Missense_Mutation p.G178S 0.30 tolerated(0.1) benign(0.05) TCGA-27-1836-01 9 133947006 133947006 C T LAMC3 Missense_Mutation p.L1069F 0.38 tolerated(0.07) benign(0.071) TCGA-27-1836-01 9 35108147 35108147 G A FAM214B Missense_Mutation p.A42V 0.39 tolerated_low_confidence(0.7) benign(0) TCGA-27-1836-01 X 101096651 101096651 G - NXF5 Frame_Shift_Del p.Q79Kfs*16 0.31 TCGA-27-1836-01 X 154159916 154159916 G A F8 Missense_Mutation p.R717W 0.31 deleterious(0) probably_damaging(0.999) TCGA-27-1836-01 X 18797156 18797156 A T PPEF1 Missense_Mutation p.Y196F 0.28 deleterious(0.02) probably_damaging(1) TCGA-27-1836-01 X 19025360 19025360 G - GPR64 Frame_Shift_Del p.P561Rfs*6 0.33 TCGA-27-1837-01 10 21845588 21845588 G C MLLT10 Intron 0.13 TCGA-27-1837-01 10 89720679 89720679 C T PTEN Missense_Mutation p.T277I 0.71 deleterious(0) probably_damaging(0.929) TCGA-27-1837-01 11 1155150 1155150 C T MUC5AC Missense_Mutation p.P53L 0.26 deleterious(0.03) benign(0.013) TCGA-27-1837-01 11 123811011 123811011 C T OR4D5 Missense_Mutation p.R230W 0.35 deleterious(0.01) benign(0.003) TCGA-27-1837-01 11 130343595 130343595 G A ADAMTS15 Missense_Mutation p.R911Q 0.44 tolerated(0.23) benign(0.068) TCGA-27-1837-01 11 58477198 58477198 G A GLYAT 3'UTR 0.41 TCGA-27-1837-01 12 110290512 110290512 C T GLTP Missense_Mutation p.D160N 0.39 tolerated(0.15) benign(0.078) TCGA-27-1837-01 12 49578914 49578914 C T TUBA1A Missense_Mutation p.G412E 0.43 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-27-1837-01 12 7302219 7302219 C T CLSTN3 Silent p.L725L 0.26 TCGA-27-1837-01 12 7477186 7477186 C T ACSM4 Missense_Mutation p.R510C 0.43 deleterious(0) probably_damaging(0.998) TCGA-27-1837-01 14 100612928 100612928 C T DEGS2 3'UTR 0.41 TCGA-27-1837-01 15 67664811 67664811 C T IQCH Silent p.A372A 0.34 TCGA-27-1837-01 16 25251329 25251329 T C ZKSCAN2 Silent p.E904E 0.38 TCGA-27-1837-01 16 30409511 30409511 C T ZNF48 Missense_Mutation p.R314W 0.41 deleterious(0) probably_damaging(1) TCGA-27-1837-01 17 16062148 16062148 C T NCOR1 Missense_Mutation p.E220K 0.35 probably_damaging(0.993) TCGA-27-1837-01 17 1634533 1634533 C G WDR81 Missense_Mutation p.L1380V 0.31 tolerated(0.09) probably_damaging(0.924) TCGA-27-1837-01 17 42335476 42335476 C T SLC4A1 Missense_Mutation p.R387Q 0.36 tolerated(0.08) benign(0.033) TCGA-27-1837-01 17 57232362 57232362 G A SKA2 Intron 0.35 TCGA-27-1837-01 17 67290837 67290837 T G ABCA5 Missense_Mutation p.K485T 0.37 deleterious(0.01) possibly_damaging(0.865) TCGA-27-1837-01 1 150936730 150936730 C T SETDB1 Missense_Mutation p.R1256W 0.32 deleterious(0) probably_damaging(0.987) TCGA-27-1837-01 1 155288033 155288033 A G FDPS Missense_Mutation p.Y212C 0.39 deleterious(0.02) benign(0.352) TCGA-27-1837-01 1 159683209 159683209 C T CRP 3'UTR 0.17 TCGA-27-1837-01 1 186310460 186310460 A G TPR Missense_Mutation p.V1271A 0.42 benign(0.027) TCGA-27-1837-01 1 47501571 47501571 G A CYP4X1 Missense_Mutation p.A196T 0.34 tolerated(0.15) benign(0.144) TCGA-27-1837-01 21 37833394 37833394 G A CLDN14 Silent p.A200A 0.44 TCGA-27-1837-01 22 29834818 29834818 C T RFPL1 Missense_Mutation p.S13L 0.32 deleterious_low_confidence(0) benign(0.099) TCGA-27-1837-01 2 233274470 233274470 C T ALPPL2 Missense_Mutation p.A496V 0.43 tolerated(0.21) benign(0.002) TCGA-27-1837-01 2 27151139 27151139 T C DPYSL5 Missense_Mutation p.L206P 0.24 deleterious(0) probably_damaging(0.999) TCGA-27-1837-01 2 42396692 42396692 C T EML4 5'UTR 0.33 TCGA-27-1837-01 3 111997653 111997653 G A SLC9C1 Missense_Mutation p.R81C 0.31 tolerated(0.12) benign(0.004) TCGA-27-1837-01 3 137484038 137484038 C G SOX14 Missense_Mutation p.L138V 0.40 tolerated(0.16) benign(0.004) TCGA-27-1837-01 3 46965117 46965117 C T CCDC12 Missense_Mutation p.E109K 0.43 tolerated(0.39) possibly_damaging(0.674) TCGA-27-1837-01 3 97851850 97851850 G A OR5H1 Silent p.S103S 0.38 TCGA-27-1837-01 4 111398043 111398043 G A ENPEP Missense_Mutation p.R158Q 0.35 tolerated(0.53) benign(0.009) TCGA-27-1837-01 4 70148376 70148376 C A UGT2B28 Missense_Mutation p.P289H 0.38 deleterious(0.02) benign(0.138) TCGA-27-1837-01 5 140626805 140626805 C T PCDHB15 Silent p.D553D 0.38 TCGA-27-1837-01 5 140740727 140740727 A C PCDHGB2 Missense_Mutation p.D342A 0.44 deleterious(0) probably_damaging(0.998) TCGA-27-1837-01 5 140802685 140802685 C T PCDHGA11 Missense_Mutation p.R631W 0.50 deleterious_low_confidence(0) probably_damaging(1) TCGA-27-1837-01 6 134582969 134582969 C T SGK1 Intron 0.33 TCGA-27-1837-01 7 101063350 101063350 G A COL26A1 Missense_Mutation p.R84Q 0.29 deleterious(0) probably_damaging(0.995) TCGA-27-1837-01 7 102604030 102604030 C T FBXL13 Missense_Mutation p.R225H 0.25 tolerated(0.49) benign(0.002) TCGA-27-1837-01 7 103368566 103368566 G A RELN Nonsense_Mutation p.R249* 0.28 TCGA-27-1837-01 7 48412010 48412010 C A ABCA13 Missense_Mutation p.S3683R 0.44 probably_damaging(1) TCGA-27-1837-01 7 80456743 80456743 T G SEMA3C Missense_Mutation p.T109P 0.24 tolerated(0.16) possibly_damaging(0.722) TCGA-27-1837-01 7 86415951 86415951 G A GRM3 Silent p.S281S 0.27 TCGA-27-1837-01 8 3216774 3216774 C T CSMD1 Silent p.T1068T 0.41 TCGA-27-1837-01 9 115451883 115451883 C A INIP Missense_Mutation p.R48I 0.38 tolerated(0.05) probably_damaging(0.955) TCGA-27-1837-01 9 12702411 12702414 ACAA - TYRP1 Frame_Shift_Del p.N353Vfs*31 0.50 TCGA-27-1837-01 X 57146697 57146697 G A SPIN2B Silent p.A122A 0.75 TCGA-27-1838-01 10 116062141 116062141 C T AFAP1L2 Missense_Mutation p.D463N 0.68 deleterious(0.02) benign(0.028) TCGA-27-1838-01 10 48429388 48429388 C T GDF10 Silent p.P166P 0.81 TCGA-27-1838-01 10 82034333 82034333 C T MAT1A Missense_Mutation p.R343Q 0.69 tolerated(0.29) benign(0.001) TCGA-27-1838-01 10 89720670 89720670 G C PTEN Missense_Mutation p.W274S 0.65 deleterious(0) probably_damaging(0.994) TCGA-27-1838-01 10 89720671 89720671 G T PTEN Missense_Mutation p.W274C 0.66 deleterious(0) possibly_damaging(0.896) TCGA-27-1838-01 11 100933263 100933263 G T PGR Missense_Mutation p.D709E 0.10 tolerated(0.39) benign(0.007) TCGA-27-1838-01 11 102584003 102584003 A T MMP8 3'UTR 0.32 TCGA-27-1838-01 11 55135749 55135749 T C OR4A15 Silent p.F130F 0.08 TCGA-27-1838-01 11 55606949 55606950 - CACCT OR5D16 Frame_Shift_Ins p.C243Sfs*7 0.31 TCGA-27-1838-01 11 556891 556891 C T C11orf35 Missense_Mutation p.R307H 0.30 tolerated(0.14) benign(0.266) TCGA-27-1838-01 11 55873210 55873210 C T OR8H2 Missense_Mutation p.T231I 0.28 deleterious(0.04) benign(0.151) TCGA-27-1838-01 11 60637220 60637220 C G ZP1 Missense_Mutation p.H177D 0.12 tolerated(0.11) benign(0.142) TCGA-27-1838-01 11 87847076 87847076 T C RAB38 3'UTR 0.29 TCGA-27-1838-01 12 21960380 21960380 C G ABCC9 Missense_Mutation p.S1450T 0.22 deleterious(0) probably_damaging(0.915) TCGA-27-1838-01 12 21968784 21968784 G C ABCC9 Missense_Mutation p.I1312M 0.23 deleterious(0) possibly_damaging(0.894) TCGA-27-1838-01 12 21970190 21970190 G A ABCC9 Nonsense_Mutation p.Q1275* 0.23 TCGA-27-1838-01 12 21981913 21981913 G T ABCC9 Missense_Mutation p.N1216K 0.21 deleterious(0.01) probably_damaging(0.944) TCGA-27-1838-01 12 55688288 55688288 C G OR6C6 Missense_Mutation p.M243I 0.29 deleterious_low_confidence(0.05) benign(0.042) TCGA-27-1838-01 12 69115670 69115670 G A NUP107 Missense_Mutation p.R454Q 0.31 deleterious(0.01) possibly_damaging(0.87) TCGA-27-1838-01 12 6959664 6959664 T C CDCA3 Missense_Mutation p.I73V 0.08 deleterious(0) probably_damaging(0.997) TCGA-27-1838-01 13 28636174 28636174 C T FLT3 Silent p.A66A 0.09 TCGA-27-1838-01 13 47345413 47345413 A T ESD 3'UTR 0.35 TCGA-27-1838-01 14 104642036 104642036 G T KIF26A Missense_Mutation p.G971W 0.24 deleterious(0.02) possibly_damaging(0.657) TCGA-27-1838-01 14 106573371 106573371 A T IGHV3-11 Missense_Mutation p.S71R 0.25 tolerated_low_confidence(0.2) benign(0.03) TCGA-27-1838-01 14 21052270 21052270 G A RNASE11 Missense_Mutation p.R122C 0.42 deleterious(0.03) benign(0) TCGA-27-1838-01 14 53237838 53237838 A G STYX 3'UTR 0.44 TCGA-27-1838-01 14 69795188 69795188 G A GALNT16 Missense_Mutation p.R197H 0.40 deleterious(0) probably_damaging(0.982) TCGA-27-1838-01 14 92343924 92343924 G A FBLN5 Silent p.D364D 0.08 TCGA-27-1838-01 14 96991694 96991694 A G PAPOLA Silent p.T99T 0.28 TCGA-27-1838-01 15 22868917 22868917 A G TUBGCP5 Missense_Mutation p.H930R 0.07 deleterious(0) probably_damaging(0.996) TCGA-27-1838-01 15 23932430 23932430 G A NDN 5'UTR 0.42 TCGA-27-1838-01 15 24922713 24922713 T C NPAP1 Missense_Mutation p.S567P 0.27 tolerated(0.33) possibly_damaging(0.461) TCGA-27-1838-01 15 42651958 42651958 G T CAPN3 5'UTR 0.34 TCGA-27-1838-01 15 45387648 45387648 A C DUOX2 Missense_Mutation p.M1409R 0.10 deleterious(0) benign(0.309) TCGA-27-1838-01 16 10525310 10525310 A G ATF7IP2 Missense_Mutation p.N278S 0.08 tolerated(0.08) possibly_damaging(0.697) TCGA-27-1838-01 16 25232824 25232824 G A AQP8 Missense_Mutation p.G103R 0.41 tolerated(0.06) probably_damaging(0.967) TCGA-27-1838-01 16 3339694 3339694 C A ZNF263 Missense_Mutation p.H396Q 0.39 deleterious(0) probably_damaging(0.996) TCGA-27-1838-01 17 11568211 11568211 C A DNAH9 Missense_Mutation p.S886Y 0.39 benign(0) TCGA-27-1838-01 17 15492060 15492060 C T CDRT1 3'UTR 0.31 TCGA-27-1838-01 17 40263362 40263362 G T DHX58 Missense_Mutation p.Q108K 0.41 tolerated(0.06) benign(0.41) TCGA-27-1838-01 17 58137429 58137429 G C HEATR6 Missense_Mutation p.S482C 0.42 deleterious(0.02) probably_damaging(0.986) TCGA-27-1838-01 17 68128948 68128948 A T KCNJ16 Missense_Mutation p.L240F 0.06 deleterious(0.03) probably_damaging(1) TCGA-27-1838-01 17 7577114 7577114 C T TP53 Missense_Mutation p.C275Y 0.52 deleterious(0) probably_damaging(0.994) TCGA-27-1838-01 17 7577610 7577610 T C TP53 Splice_Site p.X225_splice 0.35 TCGA-27-1838-01 17 8644917 8644917 G A CCDC42 Nonsense_Mutation p.Q123* 0.08 TCGA-27-1838-01 18 2688412 2688412 G A SMCHD1 Missense_Mutation p.R220H 0.05 tolerated(0.11) probably_damaging(0.944) TCGA-27-1838-01 18 28993484 28993484 G A DSG4 Missense_Mutation p.V1036I 0.70 tolerated(1) benign(0.002) TCGA-27-1838-01 18 64218401 64218401 C T CDH19 Silent p.A235A 0.74 TCGA-27-1838-01 19 36014378 36014378 C T SBSN 3'UTR 0.29 TCGA-27-1838-01 19 57931383 57931383 A G ZNF17 Missense_Mutation p.R175G 0.37 tolerated(0.2) possibly_damaging(0.665) TCGA-27-1838-01 19 8191373 8191373 G C FBN3 Missense_Mutation p.P845A 0.37 deleterious(0.01) benign(0.26) TCGA-27-1838-01 1 157490328 157490328 G A FCRL5 Missense_Mutation p.A842V 0.55 deleterious(0.03) benign(0.056) TCGA-27-1838-01 1 158615013 158615013 G A SPTA1 Missense_Mutation p.R1387C 0.34 deleterious(0) probably_damaging(1) TCGA-27-1838-01 1 196887346 196887346 G T CFHR4 Missense_Mutation p.C515F 0.05 deleterious(0) probably_damaging(0.921) TCGA-27-1838-01 1 22927229 22927229 T C EPHA8 Missense_Mutation p.W822R 0.07 deleterious(0) probably_damaging(1) TCGA-27-1838-01 1 248129572 248129572 G A OR2AK2 Silent p.T313T 0.38 TCGA-27-1838-01 1 248263521 248263521 C A OR2L13 Missense_Mutation p.P282T 0.09 deleterious(0) probably_damaging(0.973) TCGA-27-1838-01 20 1552663 1552663 C A SIRPB1 Missense_Mutation p.V152L 0.06 deleterious(0.04) benign(0.049) TCGA-27-1838-01 20 1915375 1915375 A T SIRPA Missense_Mutation p.E414V 0.08 deleterious(0) benign(0.19) TCGA-27-1838-01 20 41385120 41385120 C T PTPRT Missense_Mutation p.A281T 0.43 deleterious(0) probably_damaging(0.993) TCGA-27-1838-01 20 870858 870858 G A ANGPT4 Nonsense_Mutation p.Q155* 0.37 TCGA-27-1838-01 2 102789175 102789175 A T IL1R1 Missense_Mutation p.S290C 0.41 tolerated(0.17) probably_damaging(0.982) TCGA-27-1838-01 2 103141556 103141556 G A SLC9A4 Missense_Mutation p.R631H 0.47 deleterious(0.03) benign(0.038) TCGA-27-1838-01 2 168103543 168103543 C T XIRP2 Nonsense_Mutation p.R1881* 0.38 TCGA-27-1838-01 2 17696534 17696534 C A RAD51AP2 Missense_Mutation p.W1050L 0.52 deleterious(0) probably_damaging(0.999) TCGA-27-1838-01 2 3727515 3727515 G A ALLC Missense_Mutation p.V77M 0.26 deleterious(0.02) probably_damaging(0.989) TCGA-27-1838-01 2 48026087 48026087 C T MSH6 Missense_Mutation p.A322V 0.24 tolerated(0.31) benign(0.001) TCGA-27-1838-01 2 99634812 99634812 C T TSGA10 Silent p.R641R 0.43 TCGA-27-1838-01 3 101520152 101520152 G A NXPE3 Missense_Mutation p.G56E 0.10 tolerated(0.89) benign(0.004) TCGA-27-1838-01 3 178936091 178936091 G A PIK3CA Missense_Mutation p.E545K 0.14 deleterious(0.02) probably_damaging(0.959) TCGA-27-1838-01 3 32932739 32932739 G A TRIM71 Silent p.T681T 0.43 TCGA-27-1838-01 3 49756785 49756785 A G AMIGO3 Silent p.C38C 0.38 TCGA-27-1838-01 3 88040099 88040099 T A HTR1F Missense_Mutation p.V67D 0.32 deleterious(0) probably_damaging(1) TCGA-27-1838-01 4 110791269 110791269 C A LRIT3 Missense_Mutation p.A455E 0.07 tolerated(1) benign(0) TCGA-27-1838-01 4 120072132 120072132 G A MYOZ2 Missense_Mutation p.R61H 0.33 deleterious(0) probably_damaging(1) TCGA-27-1838-01 4 162577565 162577565 C G FSTL5 Missense_Mutation p.C270S 0.18 deleterious(0) probably_damaging(0.985) TCGA-27-1838-01 4 47322182 47322182 G T GABRB1 Missense_Mutation p.R167I 0.25 deleterious(0.03) probably_damaging(0.915) TCGA-27-1838-01 4 84216623 84216623 C G HPSE Missense_Mutation p.M502I 0.14 deleterious(0.02) benign(0.167) TCGA-27-1838-01 5 140255258 140255258 G A PCDHA12 Silent p.A67A 0.37 TCGA-27-1838-01 5 145393533 145393533 T G SH3RF2 Missense_Mutation p.I323S 0.40 deleterious(0) probably_damaging(0.999) TCGA-27-1838-01 5 38904563 38904563 T A OSMR Missense_Mutation p.W415R 0.26 deleterious(0) probably_damaging(0.999) TCGA-27-1838-01 6 108250659 108250659 G A SEC63 Missense_Mutation p.R62W 0.40 tolerated(0.1) possibly_damaging(0.834) TCGA-27-1838-01 6 135518110 135518110 A T MYB Silent p.S405S 0.27 TCGA-27-1838-01 6 160663362 160663362 C A SLC22A2 Missense_Mutation p.C451F 0.28 deleterious(0.01) probably_damaging(0.976) TCGA-27-1838-01 6 33644615 33644615 G A ITPR3 Missense_Mutation p.R1118Q 0.08 deleterious(0) possibly_damaging(0.893) TCGA-27-1838-01 6 39282798 39282814 TGGATATGGGGAAGTCC - KCNK16 3'UTR 0.10 TCGA-27-1838-01 6 43164484 43164484 C A CUL9 Missense_Mutation p.T896K 0.33 deleterious(0.01) possibly_damaging(0.875) TCGA-27-1838-01 6 43413522 43413522 G A ABCC10 Silent p.P1072P 0.43 TCGA-27-1838-01 6 52993580 52993580 T C GCM1 Silent p.G245G 0.14 TCGA-27-1838-01 6 63990360 63990360 G A LGSN Nonsense_Mutation p.R366* 0.42 TCGA-27-1838-01 6 64422167 64422167 A G PHF3 Silent p.R1561R 0.12 TCGA-27-1838-01 7 103368622 103368622 T C RELN Missense_Mutation p.Q230R 0.20 tolerated(0.18) benign(0.011) TCGA-27-1838-01 7 115890057 115890057 G A TES Intron 0.19 TCGA-27-1838-01 7 122635067 122635067 G T TAS2R16 Missense_Mutation p.Q208K 0.20 tolerated(0.58) benign(0.045) TCGA-27-1838-01 7 142575732 142575732 T C TRPV6 Missense_Mutation p.Q59R 0.11 tolerated(0.54) benign(0.002) TCGA-27-1838-01 7 14733777 14733777 C T DGKB Missense_Mutation p.G212R 0.18 deleterious(0) probably_damaging(0.998) TCGA-27-1838-01 7 23552560 23552560 G C TRA2A Missense_Mutation p.R160G 0.19 deleterious(0) probably_damaging(1) TCGA-27-1838-01 7 31009513 31009513 C A GHRHR Silent p.G100G 0.13 TCGA-27-1838-01 7 47814660 47814660 A T PKD1L1 3'UTR 0.11 TCGA-27-1838-01 7 55221822 55221822 C A EGFR Missense_Mutation p.A289D 0.93 deleterious(0) probably_damaging(0.986) TCGA-27-1838-01 7 82474620 82474620 G A PCLO Silent p.P4671P 0.24 TCGA-27-1838-01 7 99170930 99170930 G T ZNF655 Missense_Mutation p.R435I 0.12 deleterious(0) possibly_damaging(0.506) TCGA-27-1838-01 8 101016271 101016271 C T RGS22 Missense_Mutation p.R837Q 0.31 tolerated(0.46) benign(0.001) TCGA-27-1838-01 8 30040689 30040689 A C DCTN6 Nonstop_Mutation p.*191Yext*6 0.24 TCGA-27-1838-01 8 38826181 38826181 C T PLEKHA2 Silent p.H303H 0.23 TCGA-27-1838-01 8 41543721 41543721 T A ANK1 Missense_Mutation p.S1488C 0.29 deleterious(0) probably_damaging(0.961) TCGA-27-1838-01 9 109687562 109687562 C G ZNF462 Missense_Mutation p.H457D 0.30 possibly_damaging(0.537) TCGA-27-1838-01 9 130289580 130289580 C T FAM129B Missense_Mutation p.V70I 0.35 tolerated(1) benign(0.001) TCGA-27-1838-01 9 138453719 138453719 C A PAEP Silent p.T24T 0.38 TCGA-27-1838-01 9 2029232 2029232 G C SMARCA2 Missense_Mutation p.M70I 0.44 benign(0.003) TCGA-27-1838-01 9 23765009 23765009 C T ELAVL2 Intron 0.23 TCGA-27-1838-01 9 6251142 6251142 A G IL33 Missense_Mutation p.R74G 0.27 tolerated(0.47) benign(0) TCGA-27-1838-01 9 95610513 95610513 C A ZNF484 Nonsense_Mutation p.E188* 0.29 TCGA-27-1838-01 X 107224236 107224236 C T TEX13B 3'UTR 0.14 TCGA-27-1838-01 X 118220581 118220581 C T KIAA1210 Missense_Mutation p.V1538I 0.28 tolerated(1) benign(0) TCGA-27-1838-01 X 125686304 125686304 C T DCAF12L1 Silent p.T96T 0.26 TCGA-27-1838-01 X 141290560 141290560 A G MAGEC2 3'UTR 0.09 TCGA-27-1838-01 X 151303934 151303934 G A MAGEA10 Silent p.P53P 0.03 TCGA-27-1838-01 X 153209567 153209567 C A RENBP Missense_Mutation p.D60Y 0.09 deleterious(0) probably_damaging(1) TCGA-27-1838-01 X 26212996 26212996 C T MAGEB6 Missense_Mutation p.R345W 0.08 tolerated(0.06) benign(0.001) TCGA-27-1838-01 X 3235331 3235331 C T MXRA5 Missense_Mutation p.A2131T 0.27 deleterious(0.03) probably_damaging(0.951) TCGA-27-1838-01 X 41075579 41075579 G C USP9X Missense_Mutation p.C1920S 0.08 deleterious(0.03) probably_damaging(0.99) TCGA-27-1838-01 X 46491045 46491047 GTT - SLC9A7 In_Frame_Del p.N571del 0.48 TCGA-27-1838-01 X 51150985 51150985 G C CXorf67 Missense_Mutation p.G373R 0.04 deleterious(0.01) probably_damaging(0.996) TCGA-27-1838-01 X 52677324 52677324 A G SSX7 Silent p.I151I 0.06 TCGA-27-2518-01 11 10327296 10327296 C T ADM Silent p.L17L 0.23 TCGA-27-2518-01 11 45671304 45671304 C T CHST1 Silent p.S390S 0.18 TCGA-27-2518-01 11 5373571 5373571 C A OR51B6 Missense_Mutation p.H278Q 0.11 deleterious(0) benign(0.317) TCGA-27-2518-01 11 55406609 55406609 C T OR4P4 Missense_Mutation p.P259L 0.26 deleterious(0.01) probably_damaging(1) TCGA-27-2518-01 11 55541762 55541762 G A OR5D13 Silent p.A283A 0.06 TCGA-27-2518-01 11 57798597 57798597 G A OR6Q1 Missense_Mutation p.R58Q 0.09 tolerated(0.27) benign(0) TCGA-27-2518-01 11 59807922 59807922 C T OOSP2 5'UTR 0.21 TCGA-27-2518-01 11 64329558 64329558 G A SLC22A11 Missense_Mutation p.V194I 0.32 tolerated(0.6) benign(0.067) TCGA-27-2518-01 11 87847172 87847172 C A RAB38 Missense_Mutation p.G207V 0.29 tolerated_low_confidence(0.14) benign(0.004) TCGA-27-2518-01 12 129360521 129360521 G A GLT1D1 Missense_Mutation p.R44Q 0.16 deleterious(0.02) benign(0) TCGA-27-2518-01 12 4409083 4409083 C T CCND2 Nonsense_Mutation p.Q260* 0.08 TCGA-27-2518-01 12 50030609 50030609 C T PRPF40B Missense_Mutation p.R513C 0.17 deleterious(0) probably_damaging(0.999) TCGA-27-2518-01 12 65564282 65564282 C A LEMD3 Silent p.A302A 0.22 TCGA-27-2518-01 13 113771870 113771870 C T F7 Silent p.F255F 0.17 TCGA-27-2518-01 14 105418809 105418809 G A AHNAK2 Silent p.A993A 0.33 TCGA-27-2518-01 14 107218748 107218748 G T IGHV3-74 Missense_Mutation p.N93K 0.33 deleterious_low_confidence(0.01) benign(0.246) TCGA-27-2518-01 14 53217446 53217446 C T STYX Nonsense_Mutation p.R64* 0.07 TCGA-27-2518-01 16 21156695 21156695 C G DNAH3 Missense_Mutation p.L85F 0.05 deleterious_low_confidence(0) possibly_damaging(0.638) TCGA-27-2518-01 16 29884862 29884862 C T SEZ6L2 Missense_Mutation p.A765T 0.18 deleterious(0.05) benign(0.007) TCGA-27-2518-01 16 66613682 66613682 C T CMTM2 Missense_Mutation p.P58S 0.31 deleterious(0.02) probably_damaging(0.986) TCGA-27-2518-01 16 9857448 9857448 C T GRIN2A Missense_Mutation p.R1318Q 0.11 tolerated(0.06) benign(0.058) TCGA-27-2518-01 17 39535403 39535403 G A KRT34 Missense_Mutation p.T343M 0.31 deleterious(0.02) possibly_damaging(0.903) TCGA-27-2518-01 17 72308276 72308276 G A DNAI2 Silent p.A543A 0.09 TCGA-27-2518-01 18 61255920 61255920 G A SERPINB13 Missense_Mutation p.V7I 0.36 deleterious(0) benign(0.004) TCGA-27-2518-01 19 15067440 15067440 C T SLC1A6 Silent p.L339L 0.17 TCGA-27-2518-01 19 18084899 18084899 G A KCNN1 Missense_Mutation p.D68N 0.27 tolerated(0.43) benign(0.049) TCGA-27-2518-01 19 47909561 47909561 C T MEIS3 Intron 0.21 TCGA-27-2518-01 19 52115643 52115643 G A SIGLEC5 Silent p.P499P 0.18 TCGA-27-2518-01 19 53472796 53472796 T A ZNF702P RNA 0.22 TCGA-27-2518-01 19 56515208 56515208 C T NLRP5 Silent p.Y63Y 0.22 TCGA-27-2518-01 19 7833731 7833731 C T CLEC4M Missense_Mutation p.R353W 0.10 deleterious(0) probably_damaging(0.935) TCGA-27-2518-01 1 12907821 12907821 A T HNRNPCL1 Missense_Mutation p.S108T 0.18 tolerated(0.23) benign(0.035) TCGA-27-2518-01 1 205890886 205890886 G A SLC26A9 Silent p.S621S 0.44 TCGA-27-2518-01 1 241959665 241959665 G A WDR64 Missense_Mutation p.R1052H 0.20 tolerated(1) benign(0) TCGA-27-2518-01 1 40150150 40150150 G A HPCAL4 Silent p.I42I 0.18 TCGA-27-2518-01 1 7880644 7880644 G A PER3 Missense_Mutation p.G626D 0.07 tolerated(0.1) probably_damaging(0.959) TCGA-27-2518-01 1 79383365 79383365 T C ELTD1 Missense_Mutation p.N568S 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-27-2518-01 20 50407509 50407509 C T SALL4 Missense_Mutation p.G505S 0.29 tolerated(0.68) benign(0.002) TCGA-27-2518-01 20 62365995 62365995 A C ZGPAT Splice_Site p.X291_splice 0.32 TCGA-27-2518-01 21 16339283 16339283 G T NRIP1 Missense_Mutation p.P411T 0.10 deleterious(0.04) benign(0.398) TCGA-27-2518-01 22 18609536 18609536 G A TUBA8 Missense_Mutation p.R264H 0.11 tolerated_low_confidence(0.06) probably_damaging(0.997) TCGA-27-2518-01 2 10186413 10186413 G T KLF11 Missense_Mutation p.R60I 0.34 deleterious(0) probably_damaging(0.996) TCGA-27-2518-01 2 116534868 116534868 C A DPP10 Missense_Mutation p.Q440K 0.31 tolerated(0.46) benign(0.001) TCGA-27-2518-01 2 166179852 166179852 C T SCN2A Missense_Mutation p.R620W 0.10 deleterious(0.01) probably_damaging(1) TCGA-27-2518-01 2 20240757 20240757 T A LAPTM4A Missense_Mutation p.M43L 0.32 deleterious(0.04) benign(0.111) TCGA-27-2518-01 2 220329174 220329174 G A SPEG Missense_Mutation p.V909M 0.13 probably_damaging(0.997) TCGA-27-2518-01 2 228856023 228856023 T A SPHKAP Nonsense_Mutation p.K1581* 0.08 TCGA-27-2518-01 2 95947041 95947041 C T PROM2 Silent p.F493F 0.32 TCGA-27-2518-01 3 148868422 148868422 G A HPS3 Silent p.A400A 0.11 TCGA-27-2518-01 3 148925268 148925268 G T CP Missense_Mutation p.N306K 0.23 tolerated(0.35) benign(0.074) TCGA-27-2518-01 3 169654200 169654200 G C SAMD7 Missense_Mutation p.G372A 0.20 deleterious(0) probably_damaging(0.999) TCGA-27-2518-01 3 3139660 3139660 A C IL5RA Silent p.T201T 0.05 TCGA-27-2518-01 3 68466552 68466552 C T FAM19A1 Missense_Mutation p.R81W 0.28 deleterious(0) probably_damaging(0.916) TCGA-27-2518-01 5 140589502 140589502 C T PCDHB12 Silent p.N341N 0.36 TCGA-27-2518-01 5 179731784 179731784 G A GFPT2 Silent p.V610V 0.31 TCGA-27-2518-01 5 179731922 179731922 G C GFPT2 Silent p.T564T 0.33 TCGA-27-2518-01 6 30883807 30883807 G T VARS2 Missense_Mutation p.A216S 0.31 deleterious(0) probably_damaging(1) TCGA-27-2518-01 7 143047569 143047569 G C CLCN1 Missense_Mutation p.K836N 0.13 deleterious(0) possibly_damaging(0.764) TCGA-27-2518-01 7 151716925 151716925 G T GALNTL5 3'UTR 0.19 TCGA-27-2518-01 8 38148069 38148069 G A WHSC1L1 Silent p.G1014G 0.26 TCGA-27-2518-01 8 75171695 75171695 C T JPH1 Missense_Mutation p.A395T 0.39 deleterious(0) possibly_damaging(0.905) TCGA-27-2518-01 8 85774546 85774546 C T RALYL Silent p.H156H 0.12 TCGA-27-2518-01 9 100897128 100897128 G A CORO2A Missense_Mutation p.T143M 0.26 deleterious(0) probably_damaging(1) TCGA-27-2518-01 9 94495670 94495670 G A ROR2 Missense_Mutation p.S224L 0.28 tolerated(0.05) benign(0.444) TCGA-27-2519-01 10 101654794 101654794 A G DNMBP Missense_Mutation p.V1022A 0.45 tolerated(1) benign(0.006) TCGA-27-2519-01 10 108389034 108389034 C T SORCS1 Missense_Mutation p.G863D 0.10 deleterious(0) probably_damaging(1) TCGA-27-2519-01 10 21435284 21435284 G A C10orf113 Missense_Mutation p.P52S 0.46 tolerated_low_confidence(0.59) probably_damaging(0.932) TCGA-27-2519-01 10 89711899 89711899 C T PTEN Missense_Mutation p.R173C 0.47 deleterious(0.02) probably_damaging(0.913) TCGA-27-2519-01 11 88780659 88780659 G A GRM5 Missense_Mutation p.R128C 0.20 deleterious(0.01) probably_damaging(0.956) TCGA-27-2519-01 12 101480464 101480464 C T ANO4 Silent p.F486F 0.32 TCGA-27-2519-01 14 100363508 100363508 G A EML1 Missense_Mutation p.R254H 0.40 deleterious(0) probably_damaging(0.928) TCGA-27-2519-01 15 78403609 78403609 C T CIB2 Silent p.S32S 0.53 TCGA-27-2519-01 17 48245006 48245006 G A SGCA Missense_Mutation p.R74Q 0.34 tolerated(0.28) benign(0.037) TCGA-27-2519-01 17 7577094 7577094 G - TP53 Frame_Shift_Del p.R282Gfs*63 0.40 TCGA-27-2519-01 18 6859897 6859897 G T ARHGAP28 Splice_Site p.X83_splice 0.34 TCGA-27-2519-01 18 70502513 70502513 C T NETO1 Intron 0.24 TCGA-27-2519-01 19 50462137 50462137 C A SIGLEC11 Missense_Mutation p.G376C 0.09 deleterious(0.04) possibly_damaging(0.582) TCGA-27-2519-01 19 51329907 51329907 G A KLK15 Silent p.G196G 0.49 TCGA-27-2519-01 19 53887191 53887191 T A ZNF525 3'UTR 0.31 TCGA-27-2519-01 19 55814187 55814187 G C BRSK1 Missense_Mutation p.G327A 0.45 deleterious(0.01) possibly_damaging(0.794) TCGA-27-2519-01 1 152080572 152080572 T A TCHH Missense_Mutation p.R1707S 0.30 unknown(0) TCGA-27-2519-01 1 152081047 152081047 C T TCHH Missense_Mutation p.R1549Q 0.27 unknown(0) TCGA-27-2519-01 1 157737380 157737380 A G FCRL2 Intron 0.29 TCGA-27-2519-01 1 248344068 248344068 C T OR2M2 Missense_Mutation p.R261W 0.29 deleterious(0.05) benign(0.104) TCGA-27-2519-01 1 26658052 26658052 G A AIM1L Silent p.G540G 0.35 TCGA-27-2519-01 20 26094635 26094635 A T NCOR1P1 RNA 0.18 TCGA-27-2519-01 20 30745712 30745712 G A TM9SF4 Missense_Mutation p.R482H 0.24 deleterious(0.01) probably_damaging(0.909) TCGA-27-2519-01 20 54824428 54824428 G A MC3R Missense_Mutation p.V177M 0.22 deleterious(0.02) probably_damaging(0.967) TCGA-27-2519-01 21 11020878 11020878 C G BAGE2 RNA 0.15 TCGA-27-2519-01 21 11020879 11020879 T G BAGE2 RNA 0.14 TCGA-27-2519-01 2 167055444 167055444 C T SCN9A Missense_Mutation p.R1891H 0.33 tolerated(0.1) benign(0.003) TCGA-27-2519-01 2 85051138 85051138 G A TRABD2A Missense_Mutation p.R376W 0.31 tolerated(0.06) benign(0.008) TCGA-27-2519-01 3 97983628 97983628 G C OR5H6 Missense_Mutation p.G167A 0.27 tolerated(0.54) benign(0.029) TCGA-27-2519-01 4 115997685 115997685 T A NDST4 Missense_Mutation p.N170Y 0.29 tolerated(0.05) probably_damaging(0.996) TCGA-27-2519-01 4 139163251 139163252 AC - SLC7A11 5'UTR 0.20 TCGA-27-2519-01 4 187173239 187173239 C A KLKB1 Missense_Mutation p.Q405K 0.32 deleterious(0.01) probably_damaging(1) TCGA-27-2519-01 4 57797807 57797807 C T REST Missense_Mutation p.T928M 0.31 tolerated(1) benign(0) TCGA-27-2519-01 5 139217337 139217337 C G PSD2 Missense_Mutation p.A598G 0.21 deleterious(0) probably_damaging(0.957) TCGA-27-2519-01 5 161324208 161324208 C T GABRA1 Missense_Mutation p.P384L 0.25 tolerated(0.05) probably_damaging(0.999) TCGA-27-2519-01 5 57913622 57913622 C T RAB3C Silent p.F59F 0.29 TCGA-27-2519-01 5 71493036 71493036 A - MAP1B Frame_Shift_Del p.E1285Gfs*10 0.30 TCGA-27-2519-01 5 75428035 75428035 C A SV2C Missense_Mutation p.L154I 0.05 tolerated(0.06) probably_damaging(0.97) TCGA-27-2519-01 6 51910930 51910930 C T PKHD1 Missense_Mutation p.D822N 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-27-2519-01 7 142572296 142572296 T A TRPV6 Missense_Mutation p.Y467F 0.23 tolerated(0.14) probably_damaging(0.979) TCGA-27-2519-01 7 144062310 144062310 G A ARHGEF5 Missense_Mutation p.E850K 0.15 tolerated(0.12) possibly_damaging(0.755) TCGA-27-2519-01 7 148768162 148768162 C T ZNF786 Missense_Mutation p.G568R 0.34 tolerated(0.22) benign(0.062) TCGA-27-2519-01 7 154875908 154875908 G A HTR5A Missense_Mutation p.R262H 0.08 tolerated(0.11) benign(0.013) TCGA-27-2519-01 7 22985627 22985627 G A FAM126A Missense_Mutation p.R383W 0.22 deleterious(0) probably_damaging(0.993) TCGA-27-2519-01 7 38516566 38516566 G A AMPH Missense_Mutation p.R134C 0.20 deleterious(0.01) probably_damaging(1) TCGA-27-2519-01 7 48287865 48287865 G T ABCA13 Missense_Mutation p.W563C 0.08 benign(0.439) TCGA-27-2519-01 7 86415938 86415938 G A GRM3 Missense_Mutation p.R277H 0.13 deleterious(0.05) probably_damaging(0.993) TCGA-27-2519-01 8 123965254 123965254 A C ZHX2 Missense_Mutation p.T502P 0.30 tolerated(0.26) benign(0.055) TCGA-27-2519-01 8 125110086 125110086 C A FER1L6 Silent p.I1615I 0.33 TCGA-27-2519-01 8 30701172 30701172 G A TEX15 Nonsense_Mutation p.R1788* 0.30 TCGA-27-2519-01 9 110084381 110084383 ACA - RAD23B In_Frame_Del p.T269del 0.34 TCGA-27-2519-01 9 112153417 112153417 C T PTPN3 Splice_Site p.X702_splice 0.35 TCGA-27-2519-01 X 2994636 2994636 A C ARSF Missense_Mutation p.Q70P 0.56 deleterious(0) probably_damaging(0.996) TCGA-27-2519-01 X 71821869 71821869 C T PHKA1 Missense_Mutation p.R1015H 0.48 tolerated(0.59) benign(0.003) TCGA-27-2521-01 10 127569611 127569611 G A DHX32 5'UTR 0.50 TCGA-27-2521-01 10 26414537 26414537 G T MYO3A Missense_Mutation p.S705I 0.06 tolerated(0.15) possibly_damaging(0.555) TCGA-27-2521-01 10 28378639 28378639 G A MPP7 Nonsense_Mutation p.R362* 0.39 TCGA-27-2521-01 10 81058831 81058831 T G ZMIZ1 Missense_Mutation p.L564R 0.07 probably_damaging(0.988) TCGA-27-2521-01 11 113857602 113857602 C A HTR3A Silent p.I362I 0.32 TCGA-27-2521-01 11 113857614 113857614 G C HTR3A Silent p.R366R 0.32 TCGA-27-2521-01 11 116661604 116661604 G A APOA5 Missense_Mutation p.A114V 0.61 tolerated(1) benign(0.005) TCGA-27-2521-01 11 34501664 34501665 - A ELF5 3'UTR 0.31 TCGA-27-2521-01 11 45923593 45923593 A T MAPK8IP1 Silent p.S195S 0.08 TCGA-27-2521-01 11 60567613 60567613 C T MS4A10 3'UTR 0.67 TCGA-27-2521-01 12 133381337 133381337 T A GOLGA3 Missense_Mutation p.D521V 0.07 deleterious(0) possibly_damaging(0.71) TCGA-27-2521-01 12 66786170 66786170 C T GRIP1 Missense_Mutation p.M742I 0.05 tolerated(0.69) benign(0) TCGA-27-2521-01 12 75434869 75434869 T C KCNC2 3'UTR 0.09 TCGA-27-2521-01 13 114018213 114018213 G A GRTP1 Silent p.Y15Y 0.13 TCGA-27-2521-01 13 32914389 32914389 A G BRCA2 Missense_Mutation p.H1966R 0.47 deleterious(0.02) benign(0.001) TCGA-27-2521-01 13 86370282 86370282 T G SLITRK6 Missense_Mutation p.H121P 0.07 deleterious(0.01) possibly_damaging(0.827) TCGA-27-2521-01 14 106691786 106691786 C T IGHV3-21 Missense_Mutation p.A80T 0.39 tolerated_low_confidence(0.08) benign(0.047) TCGA-27-2521-01 15 49325161 49325161 C G SECISBP2L Splice_Site p.X222_splice 0.37 TCGA-27-2521-01 15 49325180 49325180 C G SECISBP2L Missense_Mutation p.D216H 0.35 deleterious(0) probably_damaging(0.999) TCGA-27-2521-01 15 76225151 76225151 A G FBXO22 Missense_Mutation p.Q307R 0.53 tolerated(0.4) benign(0.006) TCGA-27-2521-01 16 2138318 2138318 C T TSC2 Missense_Mutation p.R1751C 0.70 deleterious(0) probably_damaging(0.998) TCGA-27-2521-01 16 66957423 66957423 C A RRAD Silent p.V215V 0.14 TCGA-27-2521-01 16 66957424 66957424 A C RRAD Missense_Mutation p.V215G 0.14 deleterious(0) possibly_damaging(0.66) TCGA-27-2521-01 17 26823547 26823547 T C SLC13A2 Missense_Mutation p.V566A 0.04 deleterious(0.02) probably_damaging(0.94) TCGA-27-2521-01 17 27424842 27424842 C T MYO18A Missense_Mutation p.A1356T 0.48 tolerated(0.15) benign(0.026) TCGA-27-2521-01 17 30320320 30320320 G A SUZ12 Missense_Mutation p.E421K 0.43 tolerated(0.11) possibly_damaging(0.477) TCGA-27-2521-01 17 47284162 47284162 T C GNGT2 Missense_Mutation p.D56G 0.10 deleterious(0.04) possibly_damaging(0.897) TCGA-27-2521-01 17 66417949 66417949 G A WIPI1 Missense_Mutation p.R436C 0.46 deleterious_low_confidence(0) possibly_damaging(0.487) TCGA-27-2521-01 17 7125285 7125285 G A ACADVL Missense_Mutation p.A236T 0.23 deleterious(0) probably_damaging(0.996) TCGA-27-2521-01 17 7577149 7577149 A - TP53 Frame_Shift_Del p.L264Yfs*81 0.52 TCGA-27-2521-01 18 633305 633305 C A CLUL1 Missense_Mutation p.D288E 0.06 tolerated(0.07) benign(0.248) TCGA-27-2521-01 19 2733097 2733097 G A SLC39A3 Silent p.S199S 0.13 TCGA-27-2521-01 19 42795881 42795881 C - CIC Frame_Shift_Del p.Q958Sfs*9 0.29 TCGA-27-2521-01 19 46094298 46094298 C T GPR4 Missense_Mutation p.S276N 0.10 deleterious(0) possibly_damaging(0.893) TCGA-27-2521-01 19 57132720 57132721 - G ZNF71 Frame_Shift_Ins p.P25Tfs*53 0.51 TCGA-27-2521-01 19 8841547 8841547 T C OR2Z1 Missense_Mutation p.S53P 0.56 tolerated(0.44) benign(0.004) TCGA-27-2521-01 1 12918957 12918957 G A PRAMEF2 Silent p.L31L 0.17 TCGA-27-2521-01 1 198262082 198262082 G A NEK7 Silent p.T199T 0.40 TCGA-27-2521-01 1 245025769 245025769 C G HNRNPU Missense_Mutation p.D291H 0.07 deleterious(0) possibly_damaging(0.861) TCGA-27-2521-01 1 39753206 39753206 A T MACF1 Missense_Mutation p.E591V 0.18 possibly_damaging(0.759) TCGA-27-2521-01 1 46871972 46871972 C T FAAH Nonsense_Mutation p.R295* 0.09 TCGA-27-2521-01 1 60312821 60312821 A T HOOK1 Missense_Mutation p.E298V 0.42 deleterious(0) probably_damaging(1) TCGA-27-2521-01 1 66831413 66831413 C T PDE4B Missense_Mutation p.H450Y 0.35 deleterious(0.01) probably_damaging(1) TCGA-27-2521-01 1 95322914 95322914 G A SLC44A3 Missense_Mutation p.G366S 0.10 deleterious(0.01) possibly_damaging(0.595) TCGA-27-2521-01 20 13052999 13052999 C G SPTLC3 Silent p.A133A 0.31 TCGA-27-2521-01 20 57829379 57829379 G A ZNF831 Missense_Mutation p.A1539T 0.04 tolerated(0.26) benign(0.026) TCGA-27-2521-01 2 10912727 10912727 G A ATP6V1C2 Missense_Mutation p.R210Q 0.06 deleterious(0) probably_damaging(0.99) TCGA-27-2521-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-27-2521-01 2 239002554 239002554 A T SCLY Missense_Mutation p.D333V 0.43 tolerated(0.06) benign(0.031) TCGA-27-2521-01 2 74328397 74328397 C T TET3 Silent p.P1359P 0.45 TCGA-27-2521-01 2 75882483 75882483 A G MRPL19 3'UTR 0.50 TCGA-27-2521-01 3 121554141 121554141 C A EAF2 Missense_Mutation p.S3R 0.07 deleterious(0) benign(0.002) TCGA-27-2521-01 3 140281698 140281698 G A CLSTN2 Missense_Mutation p.R753H 0.17 tolerated(0.06) benign(0.005) TCGA-27-2521-01 3 169555374 169555374 A G LRRIQ4 Silent p.G546G 0.43 TCGA-27-2521-01 3 170219101 170219101 G A SLC7A14 Missense_Mutation p.P113L 0.07 deleterious(0) probably_damaging(1) TCGA-27-2521-01 3 52536060 52536060 G A STAB1 Missense_Mutation p.G124R 0.40 deleterious(0) probably_damaging(0.981) TCGA-27-2521-01 3 97664110 97664110 T C MINA Missense_Mutation p.K439R 0.11 tolerated(0.13) benign(0.031) TCGA-27-2521-01 5 131409784 131409784 T C CSF2 Missense_Mutation p.V57A 0.05 deleterious(0.04) probably_damaging(0.962) TCGA-27-2521-01 5 133533406 133533406 C T PPP2CA 3'UTR 0.10 TCGA-27-2521-01 5 157065654 157065654 G A SOX30 Silent p.S488S 0.74 TCGA-27-2521-01 6 129663557 129663557 G T LAMA2 Nonsense_Mutation p.G1461* 0.10 TCGA-27-2521-01 6 143093267 143093267 T C HIVEP2 Missense_Mutation p.Q870R 0.50 tolerated(0.41) benign(0.013) TCGA-27-2521-01 6 150322658 150322658 G A RAET1K RNA 0.42 TCGA-27-2521-01 6 30680501 30680501 G A MDC1 Silent p.D406D 0.08 TCGA-27-2521-01 6 34003985 34003985 G A GRM4 Silent p.F634F 0.38 TCGA-27-2521-01 6 5613545 5613545 A T FARS2 Silent p.V403V 0.09 TCGA-27-2521-01 7 103835638 103835638 G T ORC5 Missense_Mutation p.T169N 0.32 deleterious(0.02) benign(0.041) TCGA-27-2521-01 7 20420296 20420296 A G ITGB8 Missense_Mutation p.N215D 0.37 tolerated(0.62) benign(0.029) TCGA-27-2521-01 8 38005844 38005844 A G STAR Silent p.G60G 0.40 TCGA-27-2521-01 8 97157751 97157751 G C GDF6 Missense_Mutation p.D136E 0.21 deleterious(0.04) benign(0.261) TCGA-27-2521-01 9 116811982 116811982 G T ZNF618 Silent p.P707P 0.08 TCGA-27-2521-01 9 118162691 118162691 C G DEC1 Missense_Mutation p.L23V 0.10 deleterious_low_confidence(0.03) possibly_damaging(0.801) TCGA-27-2521-01 9 119204775 119204775 G T ASTN2 Silent p.T1134T 0.64 TCGA-27-2521-01 9 138517954 138517954 C T GLT6D1 Missense_Mutation p.R73Q 0.09 tolerated(0.8) benign(0.013) TCGA-27-2521-01 9 21141019 21141019 C G IFNW1 Missense_Mutation p.R184T 0.59 deleterious(0.01) possibly_damaging(0.798) TCGA-27-2521-01 9 21141108 21141108 C G IFNW1 Silent p.L154L 0.67 TCGA-27-2521-01 9 2804323 2804323 C G KIAA0020 3'UTR 0.21 TCGA-27-2521-01 X 1331521 1331521 G A CRLF2 Missense_Mutation p.R3W 0.52 deleterious_low_confidence(0.03) benign(0.363) TCGA-27-2521-01 X 35820799 35820799 A G MAGEB16 Silent p.L162L 0.93 TCGA-27-2521-01 X 48458765 48458765 C T WDR13 Silent p.D194D 0.86 TCGA-27-2521-01 X 76875916 76875916 G C ATRX Nonsense_Mutation p.S1740* 0.87 TCGA-27-2523-01 10 102987489 102987489 C T LBX1 Silent p.S128S 0.89 TCGA-27-2523-01 10 50530557 50530557 C T C10orf71 5'UTR 0.39 TCGA-27-2523-01 10 99527219 99527219 C T SFRP5 3'UTR 0.80 TCGA-27-2523-01 11 15260573 15260573 G C INSC Missense_Mutation p.R496P 0.07 deleterious(0) probably_damaging(1) TCGA-27-2523-01 11 46393049 46393049 G A DGKZ Missense_Mutation p.V407M 0.38 deleterious(0.04) possibly_damaging(0.859) TCGA-27-2523-01 11 6190634 6190634 C T OR52B2 Missense_Mutation p.R308Q 0.39 deleterious(0.04) benign(0.001) TCGA-27-2523-01 12 107393552 107393552 C T CRY1 Missense_Mutation p.R305H 0.44 deleterious(0.05) benign(0.032) TCGA-27-2523-01 12 73056901 73056901 G A TRHDE Missense_Mutation p.E1001K 0.49 tolerated(1) benign(0.037) TCGA-27-2523-01 12 7343512 7343512 A G PEX5 Missense_Mutation p.E74G 0.43 deleterious(0.02) possibly_damaging(0.786) TCGA-27-2523-01 12 76447581 76447581 A C NAP1L1 Missense_Mutation p.F247V 0.45 deleterious(0) probably_damaging(0.969) TCGA-27-2523-01 12 7651670 7651670 T A CD163 Missense_Mutation p.D191V 0.41 tolerated(0.15) possibly_damaging(0.694) TCGA-27-2523-01 13 67802035 67802035 C T PCDH9 Missense_Mutation p.E180K 0.39 deleterious(0.03) benign(0.145) TCGA-27-2523-01 14 20711922 20711922 G A OR11H4 Silent p.S324S 0.37 TCGA-27-2523-01 15 34653631 34653631 C T LPCAT4 Silent p.T371T 0.42 TCGA-27-2523-01 15 68612685 68612685 G A ITGA11 Silent p.S818S 0.64 TCGA-27-2523-01 16 30976386 30976386 T C SETD1A Silent p.G441G 0.44 TCGA-27-2523-01 16 31159857 31159857 C T PRSS36 Missense_Mutation p.A138T 0.36 tolerated(0.08) benign(0.025) TCGA-27-2523-01 17 40766544 40766544 C T TUBG1 Missense_Mutation p.R343C 0.50 deleterious(0) probably_damaging(0.959) TCGA-27-2523-01 18 60021766 60021766 G A TNFRSF11A Silent p.P142P 0.40 TCGA-27-2523-01 19 11472001 11472001 C T DKFZP761J1410 Missense_Mutation p.T142M 0.12 deleterious(0) probably_damaging(0.998) TCGA-27-2523-01 19 15726591 15726591 G A AD000091.2 5'Flank 0.48 TCGA-27-2523-01 19 18277106 18277106 T - PIK3R2 Frame_Shift_Del p.M518Sfs*6 0.28 TCGA-27-2523-01 19 36351843 36351843 G A KIRREL2 Missense_Mutation p.V321M 0.24 tolerated(0.41) benign(0.245) TCGA-27-2523-01 19 3924608 3924608 A G ATCAY 3'UTR 0.33 TCGA-27-2523-01 19 49934369 49934369 G A SLC17A7 Missense_Mutation p.P431L 0.88 deleterious(0) probably_damaging(0.995) TCGA-27-2523-01 19 8962003 8962003 G A MUC16 Silent p.I14458I 0.26 TCGA-27-2523-01 1 159275846 159275846 G A FCER1A Missense_Mutation p.G134S 0.42 tolerated(0.77) benign(0.248) TCGA-27-2523-01 1 167097485 167097485 C A DUSP27 Silent p.P1039P 0.34 TCGA-27-2523-01 1 185878633 185878633 T A HMCN1 Missense_Mutation p.N262K 0.43 benign(0.021) TCGA-27-2523-01 1 209801465 209801465 G C LAMB3 Missense_Mutation p.C401W 0.25 deleterious(0) probably_damaging(1) TCGA-27-2523-01 1 210001468 210001468 G C DIEXF Missense_Mutation p.Q20H 0.43 deleterious_low_confidence(0) probably_damaging(0.987) TCGA-27-2523-01 1 210001493 210001493 G T DIEXF Nonsense_Mutation p.E29* 0.46 TCGA-27-2523-01 1 249212387 249212387 G A PGBD2 Missense_Mutation p.G535E 0.42 deleterious(0) benign(0.115) TCGA-27-2523-01 1 249212544 249212544 G T PGBD2 Missense_Mutation p.R587S 0.52 tolerated(0.23) possibly_damaging(0.525) TCGA-27-2523-01 20 46386007 46386007 C T SULF2 Missense_Mutation p.R34K 0.32 deleterious(0.05) benign(0.217) TCGA-27-2523-01 20 61291766 61291766 C T SLCO4A1 Missense_Mutation p.T297M 0.22 tolerated(0.11) possibly_damaging(0.719) TCGA-27-2523-01 21 46000294 46000294 C T KRTAP10-5 Silent p.A54A 0.37 TCGA-27-2523-01 22 23063475 23063475 C T IGLV3-19 Missense_Mutation p.A61V 0.41 tolerated(0.08) benign(0.156) TCGA-27-2523-01 22 26839251 26839251 G A ASPHD2 3'UTR 0.36 TCGA-27-2523-01 22 37581311 37581311 C T C1QTNF6 Missense_Mutation p.R79H 0.09 tolerated(0.17) benign(0.016) TCGA-27-2523-01 2 128944331 128944331 G A UGGT1 Nonsense_Mutation p.W1478* 0.49 TCGA-27-2523-01 2 179571370 179571370 C T TTN Missense_Mutation p.R9744H 0.46 TCGA-27-2523-01 2 241621969 241621969 C T AQP12B Missense_Mutation p.V96M 0.50 deleterious(0.03) probably_damaging(0.983) TCGA-27-2523-01 3 100057936 100057936 C T NIT2 Missense_Mutation p.R5C 0.46 deleterious(0) probably_damaging(0.985) TCGA-27-2523-01 3 196921382 196921382 C G DLG1 Missense_Mutation p.E133Q 0.50 tolerated_low_confidence(0.09) probably_damaging(0.959) TCGA-27-2523-01 3 36779774 36779774 C T DCLK3 Missense_Mutation p.G126E 0.37 tolerated(0.6) benign(0.027) TCGA-27-2523-01 3 45801400 45801400 G A SLC6A20 Silent p.S526S 0.45 TCGA-27-2523-01 4 134084209 134084209 G T PCDH10 Missense_Mutation p.V959F 0.47 tolerated(0.09) possibly_damaging(0.717) TCGA-27-2523-01 4 151170830 151170830 C G DCLK2 Silent p.V706V 0.39 TCGA-27-2523-01 4 20543202 20543202 C T SLIT2 Silent p.P701P 0.41 TCGA-27-2523-01 4 40119548 40119548 G A N4BP2 Missense_Mutation p.R575H 0.43 tolerated(0.13) probably_damaging(0.971) TCGA-27-2523-01 4 90874634 90874634 T C MMRN1 3'UTR 0.23 TCGA-27-2523-01 5 169506008 169506008 C T DOCK2 Missense_Mutation p.T1675M 0.40 tolerated(0.18) benign(0.064) TCGA-27-2523-01 6 170036474 170036474 T C WDR27 Missense_Mutation p.I666V 0.43 tolerated(0.1) benign(0.023) TCGA-27-2523-01 6 24489640 24489640 T C GPLD1 Intron 0.41 TCGA-27-2523-01 7 100610398 100610398 C G MUC3A 3'UTR 0.28 TCGA-27-2523-01 7 23023600 23023600 G T FAM126A Nonsense_Mutation p.S39* 0.24 TCGA-27-2523-01 8 145642115 145642115 G A SLC39A4 Missense_Mutation p.A20V 0.44 tolerated(0.45) unknown(0) TCGA-27-2523-01 8 68140317 68140317 T C ARFGEF1 Missense_Mutation p.T1158A 0.44 tolerated(0.44) benign(0.001) TCGA-27-2523-01 9 118997909 118997909 G A PAPPA Missense_Mutation p.V909I 0.43 tolerated(0.44) benign(0.002) TCGA-27-2523-01 X 151820044 151820044 C T GABRQ Silent p.L319L 0.94 TCGA-27-2523-01 Y 5605715 5605715 C T PCDH11Y Missense_Mutation p.S1252F 0.93 deleterious_low_confidence(0) benign(0.435) TCGA-27-2524-01 10 24832950 24832950 C A KIAA1217 Missense_Mutation p.A1584D 0.49 deleterious(0) probably_damaging(0.999) TCGA-27-2524-01 10 88730289 88730289 G A ADIRF Missense_Mutation p.A61T 0.19 deleterious(0) probably_damaging(0.99) TCGA-27-2524-01 10 89692904 89692904 C T PTEN Nonsense_Mutation p.R130* 0.57 TCGA-27-2524-01 11 22363249 22363249 C A SLC17A6 Missense_Mutation p.R88S 0.43 deleterious(0) probably_damaging(0.998) TCGA-27-2524-01 11 5510785 5510785 C G OR52D1 Silent p.L283L 0.41 TCGA-27-2524-01 11 60885944 60885944 C A CD5 Missense_Mutation p.T131N 0.37 deleterious(0) possibly_damaging(0.482) TCGA-27-2524-01 12 15073953 15073953 G A ERP27 Silent p.D121D 0.34 TCGA-27-2524-01 12 21175884 21175884 T C SLCO1B7 Silent p.S147S 0.39 TCGA-27-2524-01 12 40012546 40012546 T C ABCD2 Missense_Mutation p.Y291C 0.39 tolerated(0.15) benign(0.049) TCGA-27-2524-01 12 53823327 53823327 G A AMHR2 Missense_Mutation p.G353D 0.42 deleterious(0) probably_damaging(0.982) TCGA-27-2524-01 12 91497971 91497971 G A LUM Missense_Mutation p.R330C 0.28 deleterious(0.01) possibly_damaging(0.714) TCGA-27-2524-01 13 48951053 48951053 G C RB1 Splice_Site p.X406_splice 0.07 TCGA-27-2524-01 16 53330872 53330872 A G CHD9 Missense_Mutation p.T1839A 0.12 probably_damaging(0.925) TCGA-27-2524-01 16 72827367 72827367 C T ZFHX3 Missense_Mutation p.V3072I 0.09 unknown(0) TCGA-27-2524-01 17 12847456 12847456 C T ARHGAP44 Silent p.I268I 0.33 TCGA-27-2524-01 17 28770823 28770823 C A CPD Missense_Mutation p.H793N 0.36 deleterious(0.01) possibly_damaging(0.677) TCGA-27-2524-01 17 28770972 28770972 C G CPD Missense_Mutation p.I842M 0.40 deleterious(0) benign(0.201) TCGA-27-2524-01 17 42337808 42337808 C T SLC4A1 Missense_Mutation p.R150Q 0.30 tolerated(0.1) possibly_damaging(0.643) TCGA-27-2524-01 17 42882259 42882259 G T GJC1 Silent p.I309I 0.38 TCGA-27-2524-01 17 43322740 43322740 C T FMNL1 Missense_Mutation p.S950L 0.33 deleterious(0.03) possibly_damaging(0.701) TCGA-27-2524-01 17 56621327 56621327 T A C17orf47 Missense_Mutation p.Q74L 0.28 deleterious(0.01) benign(0.01) TCGA-27-2524-01 17 58258719 58258719 C T USP32 Missense_Mutation p.R1505H 0.31 tolerated_low_confidence(0.22) benign(0) TCGA-27-2524-01 17 59763178 59763178 T C BRIP1 Intron 0.20 TCGA-27-2524-01 17 78081639 78081639 C T GAA Missense_Mutation p.A300V 0.33 tolerated(1) benign(0.001) TCGA-27-2524-01 19 36018630 36018630 G C SBSN Missense_Mutation p.A185G 0.09 tolerated(0.18) benign(0.271) TCGA-27-2524-01 19 50882004 50882004 C - NR1H2 Frame_Shift_Del p.Q234Nfs*70 0.18 TCGA-27-2524-01 19 5784414 5784414 T C PRR22 Missense_Mutation p.K56R 0.26 deleterious(0.04) possibly_damaging(0.475) TCGA-27-2524-01 19 9056586 9056586 G T MUC16 Missense_Mutation p.T10287N 0.10 possibly_damaging(0.607) TCGA-27-2524-01 1 152127651 152127651 G A RPTN Nonsense_Mutation p.Q642* 0.19 TCGA-27-2524-01 1 208205103 208205103 C T PLXNA2 Missense_Mutation p.G1686D 0.07 deleterious(0) probably_damaging(0.924) TCGA-27-2524-01 1 40029374 40029374 G A PABPC4 Missense_Mutation p.A527V 0.31 tolerated(0.24) benign(0.009) TCGA-27-2524-01 1 6639227 6639227 A G TAS1R1 Silent p.P703P 0.10 TCGA-27-2524-01 20 1616837 1616837 G A SIRPG Nonsense_Mutation p.R249* 0.37 TCGA-27-2524-01 20 21143753 21143753 C G RP4-777D9.2 Intron 0.34 TCGA-27-2524-01 20 32302477 32302477 T - PXMP4 Intron 0.27 TCGA-27-2524-01 20 37356106 37356106 G C SLC32A1 Silent p.V134V 0.39 TCGA-27-2524-01 20 55033502 55033502 T A CASS4 Missense_Mutation p.I687N 0.06 deleterious(0) probably_damaging(0.987) TCGA-27-2524-01 20 61288142 61288142 C T SLCO4A1 Silent p.A112A 0.35 TCGA-27-2524-01 22 37769172 37769172 G A ELFN2 Silent p.D801D 0.37 TCGA-27-2524-01 2 122216417 122216417 C T CLASP1 Missense_Mutation p.R438Q 0.38 tolerated(0.17) benign(0.133) TCGA-27-2524-01 2 149220206 149220206 G A MBD5 Missense_Mutation p.D57N 0.40 tolerated(0.09) unknown(0) TCGA-27-2524-01 2 207530695 207530695 G A DYTN Nonsense_Mutation p.Q347* 0.28 TCGA-27-2524-01 2 233632952 233632952 A G KCNJ13 Silent p.N344N 0.42 TCGA-27-2524-01 2 26467493 26467493 G A HADHA 5'UTR 0.25 TCGA-27-2524-01 3 12856711 12856711 G T CAND2 Missense_Mutation p.A360S 0.44 tolerated(0.29) benign(0.141) TCGA-27-2524-01 4 139100426 139100426 C A SLC7A11 Silent p.A463A 0.40 TCGA-27-2524-01 5 40843343 40843343 C A CARD6 Missense_Mutation p.P125T 0.23 deleterious(0.01) possibly_damaging(0.758) TCGA-27-2524-01 5 54329806 54329806 G A GZMK 3'UTR 0.45 TCGA-27-2524-01 6 24658115 24658115 T C TDP2 Missense_Mutation p.I148V 0.38 tolerated(1) benign(0.007) TCGA-27-2524-01 6 56566691 56566691 G A DST Missense_Mutation p.R106C 0.34 possibly_damaging(0.854) TCGA-27-2524-01 6 7229251 7229251 C T RREB1 Missense_Mutation p.R307W 0.53 deleterious(0) probably_damaging(0.999) TCGA-27-2524-01 7 138603251 138603251 G A KIAA1549 Missense_Mutation p.P374L 0.05 tolerated(0.1) benign(0.001) TCGA-27-2524-01 7 142609825 142609825 A G TRPV5 Silent p.F537F 0.22 TCGA-27-2524-01 9 140444679 140444679 G A PNPLA7 5'UTR 0.05 TCGA-27-2524-01 9 40716264 40716264 T C FAM74A3 RNA 0.22 TCGA-27-2524-01 9 95263237 95263237 A G ECM2 Missense_Mutation p.I568T 0.06 deleterious(0) probably_damaging(0.992) TCGA-27-2524-01 X 127186205 127186205 G T ACTRT1 5'UTR 0.81 TCGA-27-2524-01 X 148069012 148069012 G A AFF2 Missense_Mutation p.V1247I 0.80 deleterious(0) probably_damaging(0.965) TCGA-27-2524-01 X 53455349 53455349 G A RIBC1 Silent p.K106K 0.67 TCGA-27-2526-01 10 124672488 124672488 C A FAM24A 3'UTR 0.05 TCGA-27-2526-01 10 89692923 89692923 G A PTEN Missense_Mutation p.C136Y 0.72 deleterious(0.04) possibly_damaging(0.634) TCGA-27-2526-01 11 121028677 121028677 G A TECTA Missense_Mutation p.G1478D 0.47 deleterious(0) probably_damaging(0.989) TCGA-27-2526-01 11 1270537 1270537 C T MUC5B Missense_Mutation p.P4143S 0.24 unknown(0) TCGA-27-2526-01 11 56510803 56510803 C A OR9G4 Missense_Mutation p.G162V 0.35 tolerated(0.06) probably_damaging(0.911) TCGA-27-2526-01 12 110813811 110813811 C A ANAPC7 Intron 0.32 TCGA-27-2526-01 12 113825637 113825637 G A PLBD2 Missense_Mutation p.D510N 0.42 deleterious(0) probably_damaging(1) TCGA-27-2526-01 12 59270251 59270251 A G LRIG3 Missense_Mutation p.F891L 0.39 tolerated(0.26) benign(0.001) TCGA-27-2526-01 12 59271192 59271192 A G LRIG3 Silent p.I842I 0.18 TCGA-27-2526-01 12 80650221 80650221 C G OTOGL Missense_Mutation p.N555K 0.60 tolerated(0.07) benign(0.004) TCGA-27-2526-01 13 107822752 107822752 G A FAM155A 3'UTR 0.35 TCGA-27-2526-01 15 20169994 20169994 G A IGHV1OR15-9 Missense_Mutation p.T93I 0.41 deleterious(0.02) benign(0.262) TCGA-27-2526-01 15 43891425 43891425 G A CKMT1B Missense_Mutation p.G403D 0.38 deleterious(0.01) benign(0.262) TCGA-27-2526-01 15 48760692 48760692 C T FBN1 Missense_Mutation p.G1500E 0.39 probably_damaging(1) TCGA-27-2526-01 15 58476349 58476349 C A AQP9 3'UTR 0.25 TCGA-27-2526-01 15 99251008 99251008 G A IGF1R Silent p.T104T 0.43 TCGA-27-2526-01 16 67681065 67681065 C T RLTPR Missense_Mutation p.R220W 0.38 deleterious(0) possibly_damaging(0.462) TCGA-27-2526-01 17 61562383 61562383 C A ACE Intron 0.27 TCGA-27-2526-01 18 8252488 8252488 C T PTPRM Missense_Mutation p.P853S 0.36 tolerated(0.07) benign(0.031) TCGA-27-2526-01 19 16874718 16874718 A G NWD1 Missense_Mutation p.H738R 0.37 tolerated(0.07) benign(0.063) TCGA-27-2526-01 19 22847068 22847068 C T ZNF492 Silent p.C199C 0.27 TCGA-27-2526-01 19 3550991 3550991 G A MFSD12 Missense_Mutation p.T167M 0.08 probably_damaging(0.985) TCGA-27-2526-01 19 43257323 43257323 T A PSG8 3'Flank 0.44 TCGA-27-2526-01 19 59028730 59028730 G A ZBTB45 Missense_Mutation p.T104M 0.37 deleterious(0.05) benign(0.197) TCGA-27-2526-01 19 9021119 9021119 C T MUC16 Missense_Mutation p.G12402R 0.46 benign(0.275) TCGA-27-2526-01 1 109795999 109795999 G A CELSR2 Missense_Mutation p.V1100M 0.43 deleterious(0.01) probably_damaging(0.975) TCGA-27-2526-01 1 152191194 152191194 C G HRNR Missense_Mutation p.E971Q 0.34 unknown(0) TCGA-27-2526-01 1 17318252 17318252 C T ATP13A2 Missense_Mutation p.R743H 0.40 tolerated(0.19) benign(0.002) TCGA-27-2526-01 1 180063502 180063505 GACA - CEP350 Frame_Shift_Del p.D2756Vfs*3 0.36 TCGA-27-2526-01 1 67301450 67301450 C T WDR78 Missense_Mutation p.R531H 0.35 deleterious(0.04) possibly_damaging(0.497) TCGA-27-2526-01 1 87101783 87101783 C T RP4-651E10.4 Intron 0.38 TCGA-27-2526-01 20 58471554 58471554 A G SYCP2 Silent p.S478S 0.29 TCGA-27-2526-01 21 33044602 33044602 C T SCAF4 Missense_Mutation p.A852T 0.22 unknown(0) TCGA-27-2526-01 22 28310333 28310333 C T PITPNB Missense_Mutation p.R8H 0.10 tolerated(0.06) benign(0.268) TCGA-27-2526-01 22 31302390 31302390 C A OSBP2 3'UTR 0.48 TCGA-27-2526-01 2 240944658 240944658 C T NDUFA10 Missense_Mutation p.D287N 0.38 tolerated(0.17) benign(0.075) TCGA-27-2526-01 2 27425742 27425742 C T SLC5A6 Missense_Mutation p.G405D 0.38 tolerated(0.2) benign(0.392) TCGA-27-2526-01 2 65237852 65237852 A G SLC1A4 Missense_Mutation p.N252S 0.42 tolerated(0.1) benign(0.029) TCGA-27-2526-01 3 109026881 109026881 G A DPPA2 Missense_Mutation p.S219F 0.43 tolerated(0.15) benign(0.003) TCGA-27-2526-01 3 112546470 112546470 T C CD200R1L Silent p.A58A 0.45 TCGA-27-2526-01 4 3451018 3451018 G A HGFAC Missense_Mutation p.G614S 0.33 deleterious(0) probably_damaging(1) TCGA-27-2526-01 4 40439840 40439840 G A RBM47 Silent p.Y357Y 0.44 TCGA-27-2526-01 5 13876806 13876806 T A DNAH5 Missense_Mutation p.N1128I 0.35 possibly_damaging(0.703) TCGA-27-2526-01 5 140554315 140554315 C T PCDHB7 Silent p.R633R 0.24 TCGA-27-2526-01 5 148407984 148407984 G C SH3TC2 Missense_Mutation p.D437E 0.37 tolerated(0.64) benign(0.04) TCGA-27-2526-01 5 160761758 160761758 C T GABRB2 Splice_Site p.X278_splice 0.53 TCGA-27-2526-01 5 161117359 161117359 G A GABRA6 Missense_Mutation p.G276R 0.45 deleterious(0) probably_damaging(1) TCGA-27-2526-01 5 41186199 41186199 C T C6 Silent p.P233P 0.29 TCGA-27-2526-01 6 100841630 100841630 C T SIM1 Missense_Mutation p.A435T 0.39 tolerated(0.09) benign(0.37) TCGA-27-2526-01 6 26056237 26056245 CTTCTTGGG - HIST1H1C In_Frame_Del p.P138_K140del 0.24 TCGA-27-2526-01 6 38750809 38750809 C T DNAH8 Silent p.D546D 0.41 TCGA-27-2526-01 6 74228160 74228160 A C EEF1A1 Missense_Mutation p.S316A 0.29 tolerated_low_confidence(0.05) benign(0.202) TCGA-27-2526-01 6 96053740 96053740 C T MANEA Missense_Mutation p.T283I 0.33 deleterious(0.01) probably_damaging(0.999) TCGA-27-2526-01 7 107745023 107745023 C T LAMB4 Silent p.P304P 0.20 TCGA-27-2526-01 7 142176428 142176428 C T TRBV7-4 Missense_Mutation p.R83Q 0.23 deleterious(0.04) possibly_damaging(0.606) TCGA-27-2526-01 7 143929491 143929491 G A OR2A42 Missense_Mutation p.T149M 0.10 deleterious(0.04) benign(0.067) TCGA-27-2526-01 7 157041080 157041081 - TGG UBE3C In_Frame_Ins p.V835dup 0.22 TCGA-27-2526-01 7 63529345 63529345 G A ZNF727 Missense_Mutation p.R27H 0.16 tolerated(0.05) benign(0.001) TCGA-27-2526-01 7 93108720 93108720 C T CALCR Missense_Mutation p.A69T 0.19 deleterious(0) benign(0.336) TCGA-27-2526-01 7 98457803 98457803 C T TMEM130 Missense_Mutation p.G184R 0.19 deleterious(0) probably_damaging(1) TCGA-27-2526-01 8 113420591 113420591 G T CSMD3 Nonsense_Mutation p.S1854* 0.31 TCGA-27-2526-01 X 110574142 110574142 G A DCX Intron 0.42 TCGA-27-2526-01 X 47509844 47509844 G A ELK1 5'UTR 0.33 TCGA-27-2527-01 10 105176336 105176336 A G PDCD11 Missense_Mutation p.Y536C 0.11 deleterious(0) probably_damaging(0.928) TCGA-27-2527-01 10 118671332 118671332 T G KIAA1598 Missense_Mutation p.E443A 0.16 deleterious(0.01) probably_damaging(0.987) TCGA-27-2527-01 10 125506512 125506512 C T CPXM2 Missense_Mutation p.R680H 0.19 deleterious(0) probably_damaging(1) TCGA-27-2527-01 11 102816396 102816396 C A MMP13 Missense_Mutation p.D432Y 0.14 deleterious(0) probably_damaging(1) TCGA-27-2527-01 11 18309168 18309168 C T HPS5 Silent p.S877S 0.16 TCGA-27-2527-01 11 26708091 26708091 C - SLC5A12 Frame_Shift_Del p.C385Ffs*6 0.14 TCGA-27-2527-01 11 44129545 44129545 C T EXT2 Missense_Mutation p.R128C 0.18 deleterious(0) probably_damaging(0.954) TCGA-27-2527-01 11 51412077 51412077 C T OR4A5 Missense_Mutation p.G107R 0.15 deleterious_low_confidence(0) probably_damaging(0.972) TCGA-27-2527-01 11 60274645 60274645 G A MS4A12 3'UTR 0.19 TCGA-27-2527-01 11 62603254 62603254 G T WDR74 Silent p.P143P 0.06 TCGA-27-2527-01 12 123187080 123187080 G A HCAR2 Missense_Mutation p.R251W 0.13 deleterious(0.03) probably_damaging(0.995) TCGA-27-2527-01 12 2716164 2716164 C T CACNA1C Missense_Mutation p.T1095M 0.16 tolerated(0.15) benign(0.006) TCGA-27-2527-01 12 33538180 33538180 G A SYT10 Missense_Mutation p.P375L 0.18 deleterious(0) probably_damaging(0.999) TCGA-27-2527-01 12 48578422 48578422 C T C12orf68 Missense_Mutation p.P173S 0.25 tolerated_low_confidence(0.09) benign(0.011) TCGA-27-2527-01 12 52180608 52180608 G A SCN8A Missense_Mutation p.V1409I 0.09 deleterious(0.01) benign(0.015) TCGA-27-2527-01 12 55356553 55356553 C T TESPA1 Missense_Mutation p.A377T 0.14 tolerated_low_confidence(0.38) benign(0.023) TCGA-27-2527-01 12 7174399 7174399 T A C1S Missense_Mutation p.S348R 0.11 deleterious(0) probably_damaging(0.984) TCGA-27-2527-01 13 70535514 70535514 G A KLHL1 Missense_Mutation p.A248V 0.16 deleterious(0) probably_damaging(0.986) TCGA-27-2527-01 14 23586657 23586657 G A CEBPE 3'UTR 0.50 TCGA-27-2527-01 14 65245925 65245925 C T SPTB Missense_Mutation p.D1505N 0.15 tolerated(0.1) benign(0.064) TCGA-27-2527-01 15 42168354 42168354 G A SPTBN5 Silent p.S1360S 0.16 TCGA-27-2527-01 15 63948489 63948489 C T HERC1 Missense_Mutation p.R3223Q 0.17 probably_damaging(0.99) TCGA-27-2527-01 15 81628948 81628948 A G TMC3 Splice_Site p.X735_splice 0.14 TCGA-27-2527-01 16 70693910 70693910 C A IL34 Missense_Mutation p.S183R 0.14 deleterious(0.02) possibly_damaging(0.809) TCGA-27-2527-01 17 56389930 56389930 C G BZRAP1 Missense_Mutation p.G751A 0.14 tolerated(0.22) benign(0.119) TCGA-27-2527-01 19 10220890 10220890 C T PPAN Missense_Mutation p.R264W 0.09 deleterious(0) possibly_damaging(0.707) TCGA-27-2527-01 19 38990280 38990280 A C RYR1 Missense_Mutation p.S2345R 0.08 benign(0.336) TCGA-27-2527-01 19 46124852 46124852 G A EML2 Silent p.G496G 0.17 TCGA-27-2527-01 19 58967238 58967238 C T ZNF324B Silent p.G309G 0.20 TCGA-27-2527-01 19 8809058 8809058 G A ACTL9 5'UTR 0.17 TCGA-27-2527-01 1 120285535 120285535 C G PHGDH Missense_Mutation p.Q439E 0.12 tolerated(0.06) benign(0.367) TCGA-27-2527-01 1 155170717 155170719 CAT - THBS3 In_Frame_Del p.D506del 0.15 TCGA-27-2527-01 1 155629578 155629578 C G YY1AP1 Missense_Mutation p.G846A 0.06 deleterious_low_confidence(0) possibly_damaging(0.805) TCGA-27-2527-01 1 19181421 19181421 C T TAS1R2 Silent p.L181L 0.12 TCGA-27-2527-01 1 196749091 196749091 T C CFHR3 Missense_Mutation p.C140R 0.29 deleterious(0) possibly_damaging(0.762) TCGA-27-2527-01 1 196749101 196749101 T A CFHR3 Missense_Mutation p.V143D 0.26 deleterious(0.01) benign(0.119) TCGA-27-2527-01 1 32126216 32126216 G T COL16A1 Silent p.P1283P 0.13 TCGA-27-2527-01 1 57491656 57491656 G A DAB1 Missense_Mutation p.P262S 0.15 tolerated(1) benign(0.009) TCGA-27-2527-01 1 86921272 86921272 A G CLCA2 3'UTR 0.14 TCGA-27-2527-01 21 28212824 28212824 C A ADAMTS1 Missense_Mutation p.G479V 0.06 deleterious(0) probably_damaging(1) TCGA-27-2527-01 22 22893261 22893261 T C PRAME Missense_Mutation p.H91R 0.22 tolerated(0.4) benign(0) TCGA-27-2527-01 2 136630337 136630337 C G MCM6 Missense_Mutation p.V62L 0.07 tolerated(0.42) benign(0.001) TCGA-27-2527-01 2 179458739 179458739 C T TTN Missense_Mutation p.V19461M 0.17 TCGA-27-2527-01 2 202216040 202216040 G A ALS2CR12 Missense_Mutation p.R30C 0.13 tolerated(0.07) benign(0.002) TCGA-27-2527-01 2 242573479 242573479 G A THAP4 Silent p.D31D 0.19 TCGA-27-2527-01 2 50850508 50850508 C T NRXN1 Missense_Mutation p.G393R 0.12 tolerated(0.07) probably_damaging(1) TCGA-27-2527-01 2 95947910 95947910 C T PROM2 Missense_Mutation p.A555V 0.08 tolerated(0.16) benign(0.098) TCGA-27-2527-01 3 10108908 10108908 T C FANCD2 Missense_Mutation p.C801R 0.18 deleterious(0) probably_damaging(0.94) TCGA-27-2527-01 3 10254939 10254939 G A IRAK2 Missense_Mutation p.G193R 0.19 deleterious(0.01) possibly_damaging(0.617) TCGA-27-2527-01 3 14862951 14862951 C A FGD5 Silent p.P791P 0.11 TCGA-27-2527-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.10 tolerated(0.11) possibly_damaging(0.529) TCGA-27-2527-01 3 190345166 190345166 G A IL1RAP Missense_Mutation p.R277H 0.15 tolerated(0.16) benign(0.001) TCGA-27-2527-01 3 39229284 39229284 C T XIRP1 Silent p.R551R 0.17 TCGA-27-2527-01 3 49062153 49062153 G A IMPDH2 Silent p.L460L 0.07 TCGA-27-2527-01 3 52595840 52595840 G A PBRM1 Missense_Mutation p.R1359C 0.15 deleterious(0) possibly_damaging(0.835) TCGA-27-2527-01 3 63981678 63981678 C - ATXN7 Frame_Shift_Del p.S727Ffs*24 0.20 TCGA-27-2527-01 4 175897289 175897289 G A ADAM29 Missense_Mutation p.V205I 0.14 deleterious(0.04) probably_damaging(0.927) TCGA-27-2527-01 4 70079956 70079956 G A UGT2B11 Missense_Mutation p.A162V 0.21 deleterious(0) benign(0.003) TCGA-27-2527-01 5 137803019 137803019 C A EGR1 Missense_Mutation p.A294D 0.17 deleterious(0) unknown(0) TCGA-27-2527-01 5 160753376 160753376 G A GABRB2 Missense_Mutation p.T397M 0.14 tolerated(0.13) benign(0.339) TCGA-27-2527-01 6 27860752 27860752 A T HIST1H2AM Missense_Mutation p.L59Q 0.08 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-27-2527-01 6 31830506 31830506 C T NEU1 Silent p.G16G 0.17 TCGA-27-2527-01 6 51751972 51751972 C T PKHD1 Silent p.P2356P 0.18 TCGA-27-2527-01 6 7583937 7583937 G A DSP Missense_Mutation p.A2148T 0.23 probably_damaging(0.999) TCGA-27-2527-01 6 88170826 88170826 G A C6ORF165 Silent p.T527T 0.20 TCGA-27-2527-01 7 37780665 37780665 C G GPR141 Missense_Mutation p.Q224E 0.05 deleterious(0) probably_damaging(0.995) TCGA-27-2527-01 7 42004153 42004153 G A GLI3 Silent p.F1506F 0.16 TCGA-27-2527-01 7 4215452 4215452 T C SDK1 Missense_Mutation p.M1661T 0.10 tolerated(0.8) benign(0) TCGA-27-2527-01 7 83095907 83095907 G T SEMA3E Missense_Mutation p.A116E 0.08 deleterious(0) probably_damaging(1) TCGA-27-2527-01 7 92763418 92763418 T G SAMD9L Missense_Mutation p.K623Q 0.05 deleterious(0.04) possibly_damaging(0.591) TCGA-27-2527-01 7 98581850 98581850 G A TRRAP Missense_Mutation p.A3057T 0.14 possibly_damaging(0.837) TCGA-27-2527-01 7 99998699 99998699 C T ZCWPW1 Missense_Mutation p.G629R 0.07 tolerated_low_confidence(0.51) possibly_damaging(0.685) TCGA-27-2527-01 8 41753935 41753935 G C ANK1 Missense_Mutation p.Q22E 0.16 tolerated_low_confidence(0.41) benign(0.011) TCGA-27-2527-01 8 85774569 85774569 G A RALYL Missense_Mutation p.R164H 0.14 deleterious(0.02) probably_damaging(0.962) TCGA-27-2527-01 8 99440635 99440635 G A KCNS2 Missense_Mutation p.S143N 0.10 deleterious(0.01) probably_damaging(0.954) TCGA-27-2527-01 X 131212279 131212279 C A FRMD7 Missense_Mutation p.R589M 0.30 deleterious(0) possibly_damaging(0.765) TCGA-27-2527-01 X 142967779 142967779 C A UBE2NL 3'UTR 0.38 TCGA-27-2527-01 X 150349759 150349759 C T GPR50 Silent p.A568A 0.34 TCGA-27-2528-01 10 105204397 105204397 A G PDCD11 Missense_Mutation p.Y1801C 0.53 deleterious(0) probably_damaging(0.971) TCGA-27-2528-01 10 64954062 64954062 T A JMJD1C Missense_Mutation p.Q1906H 0.44 deleterious(0) probably_damaging(0.95) TCGA-27-2528-01 11 108143569 108143572 TCAA - ATM Frame_Shift_Del p.N1094Dfs*14 0.33 TCGA-27-2528-01 11 32413578 32413578 G A WT1 Nonsense_Mutation p.R458* 0.31 TCGA-27-2528-01 11 55681478 55681478 A T OR5W2 Missense_Mutation p.V194D 0.33 deleterious(0) benign(0.144) TCGA-27-2528-01 11 902312 902312 C T CHID1 Missense_Mutation p.D119N 0.33 deleterious(0.03) benign(0.054) TCGA-27-2528-01 12 15650274 15650274 G A PTPRO Missense_Mutation p.V149I 0.33 tolerated_low_confidence(0.22) benign(0.01) TCGA-27-2528-01 12 2975658 2975658 G A FOXM1 Silent p.H292H 0.36 TCGA-27-2528-01 12 48866783 48866783 A C ANP32D Missense_Mutation p.L112F 0.36 tolerated(0.14) probably_damaging(0.918) TCGA-27-2528-01 12 52451031 52451031 G A NR4A1 Missense_Mutation p.R463H 0.41 deleterious(0.01) probably_damaging(1) TCGA-27-2528-01 12 8376154 8376154 C T FAM90A1 Splice_Site p.X108_splice 0.28 TCGA-27-2528-01 14 23829158 23829158 C T EFS Missense_Mutation p.A177T 0.36 tolerated(0.14) benign(0.003) TCGA-27-2528-01 16 12798557 12798557 G A CPPED1 Silent p.I213I 0.35 TCGA-27-2528-01 17 19705231 19705231 C T ULK2 Missense_Mutation p.A434T 0.36 tolerated(0.46) benign(0.003) TCGA-27-2528-01 17 33482349 33482349 G A UNC45B Missense_Mutation p.R225Q 0.30 tolerated(0.29) benign(0.004) TCGA-27-2528-01 17 56439918 56439918 C T RNF43 Missense_Mutation p.R225H 0.43 tolerated(0.22) benign(0.002) TCGA-27-2528-01 17 65889572 65889572 T C BPTF Silent p.F714F 0.42 TCGA-27-2528-01 17 7612770 7612770 G A EFNB3 Missense_Mutation p.G300D 0.29 tolerated_low_confidence(0.15) benign(0.021) TCGA-27-2528-01 17 7626952 7626952 G A DNAH2 Missense_Mutation p.R58Q 0.26 benign(0.006) TCGA-27-2528-01 18 28736074 28736074 G A DSC1 Nonsense_Mutation p.R135* 0.29 TCGA-27-2528-01 18 56171191 56171191 A C ALPK2 Missense_Mutation p.S2073R 0.31 deleterious(0) probably_damaging(0.974) TCGA-27-2528-01 19 55086977 55086977 G A LILRA2 Missense_Mutation p.E304K 0.20 tolerated(0.09) benign(0.027) TCGA-27-2528-01 19 6681977 6681977 T G C3 Missense_Mutation p.N1442T 0.23 deleterious(0.02) benign(0.403) TCGA-27-2528-01 1 158614117 158614117 C T SPTA1 Missense_Mutation p.D1422N 0.37 deleterious(0.01) possibly_damaging(0.79) TCGA-27-2528-01 1 167992275 167992275 C T DCAF6 Silent p.D533D 0.26 TCGA-27-2528-01 1 178885534 178885534 G A RALGPS2 3'UTR 0.39 TCGA-27-2528-01 1 205033757 205033758 TG - CNTN2 Frame_Shift_Del p.V467Nfs*16 0.17 TCGA-27-2528-01 1 22313121 22313121 G A CELA3B Missense_Mutation p.R247H 0.35 tolerated(0.46) benign(0.202) TCGA-27-2528-01 1 228468436 228468436 C T OBSCN Silent p.D3141D 0.10 TCGA-27-2528-01 1 26691223 26691223 G A ZNF683 Nonsense_Mutation p.R272* 0.41 TCGA-27-2528-01 20 61386135 61386135 C T NTSR1 Silent p.A271A 0.25 TCGA-27-2528-01 22 50279840 50279840 C T ZBED4 Missense_Mutation p.R844W 0.27 deleterious(0) probably_damaging(0.996) TCGA-27-2528-01 2 128935427 128935427 G A UGGT1 Missense_Mutation p.V1216M 0.31 tolerated(0.39) benign(0.002) TCGA-27-2528-01 2 231067312 231067312 C T SP110 Missense_Mutation p.R344Q 0.33 tolerated(1) unknown(0) TCGA-27-2528-01 2 241657468 241657468 G A KIF1A Missense_Mutation p.R1778W 0.40 deleterious(0) probably_damaging(1) TCGA-27-2528-01 2 74479508 74479508 C T SLC4A5 Missense_Mutation p.V426M 0.17 tolerated(0.6) benign(0.391) TCGA-27-2528-01 3 39126186 39126186 T G WDR48 Silent p.S444S 0.24 TCGA-27-2528-01 4 115998108 115998108 A G NDST4 Missense_Mutation p.S29P 0.30 deleterious_low_confidence(0.05) probably_damaging(0.984) TCGA-27-2528-01 4 15626935 15626935 C A FBXL5 Missense_Mutation p.G597V 0.32 tolerated(0.06) benign(0.15) TCGA-27-2528-01 4 48037778 48037778 G A NIPAL1 Silent p.P274P 0.04 TCGA-27-2528-01 4 81967723 81967723 G T BMP3 Missense_Mutation p.G383V 0.39 deleterious(0) probably_damaging(1) TCGA-27-2528-01 5 140516912 140516912 C T PCDHB5 Silent p.R632R 0.39 TCGA-27-2528-01 5 140764355 140764355 G A PCDHGA7 Missense_Mutation p.R630Q 0.33 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-27-2528-01 5 148586637 148586637 A G ABLIM3 Missense_Mutation p.H172R 0.26 deleterious(0) probably_damaging(0.948) TCGA-27-2528-01 5 161300296 161300296 C A GABRA1 Missense_Mutation p.N143K 0.25 deleterious(0.03) benign(0.019) TCGA-27-2528-01 5 167919770 167919770 A G RARS Missense_Mutation p.E96G 0.04 tolerated(0.3) benign(0.005) TCGA-27-2528-01 5 34811182 34811182 G - RAI14 Frame_Shift_Del p.D176Ifs*32 0.33 TCGA-27-2528-01 5 36035914 36035914 G A UGT3A2 Silent p.L486L 0.45 TCGA-27-2528-01 6 109258202 109258202 G T ARMC2 Missense_Mutation p.Q532H 0.12 deleterious(0) possibly_damaging(0.625) TCGA-27-2528-01 6 137245675 137245675 G T SLC35D3 Missense_Mutation p.R364S 0.24 tolerated_low_confidence(0.76) benign(0) TCGA-27-2528-01 6 152751311 152751311 A T SYNE1 Missense_Mutation p.L1575H 0.39 probably_damaging(0.969) TCGA-27-2528-01 6 26184206 26184207 - ATC HIST1H2BE In_Frame_Ins p.I62dup 0.38 TCGA-27-2528-01 7 123593667 123593667 G A SPAM1 Missense_Mutation p.V15I 0.28 tolerated(0.13) benign(0.033) TCGA-27-2528-01 7 136588008 136588008 C T CHRM2 Intron 0.32 TCGA-27-2528-01 7 148484161 148484161 C G CUL1 Missense_Mutation p.H476Q 0.35 tolerated(0.36) benign(0.002) TCGA-27-2528-01 7 150648833 150648833 G A KCNH2 Silent p.L550L 0.48 TCGA-27-2528-01 7 21603893 21603893 C T DNAH11 Missense_Mutation p.R358C 0.25 benign(0.005) TCGA-27-2528-01 7 55220274 55220274 C T EGFR Missense_Mutation p.R222C 0.81 deleterious(0) probably_damaging(1) TCGA-27-2528-01 7 6630085 6630085 G C C7orf26 Missense_Mutation p.K57N 0.22 tolerated(0.06) possibly_damaging(0.895) TCGA-27-2528-01 9 130579436 130579436 T C ENG Missense_Mutation p.D578G 0.56 tolerated(0.21) benign(0.002) TCGA-27-2528-01 9 141006952 141006952 A G CACNA1B Missense_Mutation p.H1844R 0.31 deleterious(0.01) benign(0.074) TCGA-27-2528-01 X 35938122 35938122 G A CXorf22 Missense_Mutation p.R69H 0.62 tolerated(0.09) benign(0.07) TCGA-27-2528-01 Y 24050305 24050305 C T RBMY1E Missense_Mutation p.R410Q 0.30 tolerated(0.09) benign(0.025) TCGA-28-1747-01 10 43882526 43882526 G T HNRNPF Silent p.S269S 0.08 TCGA-28-1747-01 11 114400948 114400948 C T NXPE1 Missense_Mutation p.R119Q 0.07 tolerated(0.15) benign(0.023) TCGA-28-1747-01 11 44297101 44297101 C - ALX4 Frame_Shift_Del p.D192Tfs*58 0.27 TCGA-28-1747-01 11 49598156 49598156 C T RP11-707M1.1 RNA 0.29 TCGA-28-1747-01 12 63195712 63195712 C T PPM1H Missense_Mutation p.G214R 0.43 tolerated(0.09) possibly_damaging(0.67) TCGA-28-1747-01 12 7531814 7531814 C T CD163L1 Missense_Mutation p.V711M 0.29 tolerated(0.11) possibly_damaging(0.643) TCGA-28-1747-01 13 113527920 113527920 A T ATP11A Missense_Mutation p.N1031Y 0.06 deleterious(0.02) possibly_damaging(0.818) TCGA-28-1747-01 14 22337438 22337438 A - TRAV13-1 Frame_Shift_Del p.D78Tfs*8 0.29 TCGA-28-1747-01 14 96953242 96953242 G A AK7 Missense_Mutation p.R661Q 0.38 tolerated(0.18) benign(0.119) TCGA-28-1747-01 15 102312449 102312449 G T RN7SL209P 3'Flank 0.31 TCGA-28-1747-01 15 33944995 33944995 G A RYR3 Missense_Mutation p.V1407M 0.34 probably_damaging(0.909) TCGA-28-1747-01 15 43658464 43658464 C T ZSCAN29 Missense_Mutation p.D356N 0.42 tolerated(0.06) possibly_damaging(0.747) TCGA-28-1747-01 15 45555359 45555359 G A SLC28A2 Silent p.S121S 0.36 TCGA-28-1747-01 16 10273879 10273879 G A GRIN2A Silent p.G130G 0.33 TCGA-28-1747-01 17 13400088 13400088 G A HS3ST3A1 Missense_Mutation p.T216M 0.39 deleterious(0) probably_damaging(0.982) TCGA-28-1747-01 17 39766103 39766103 G A KRT16 3'UTR 0.60 TCGA-28-1747-01 17 43226653 43226653 C - HEXIM1 Frame_Shift_Del p.P34Qfs*52 0.44 TCGA-28-1747-01 17 67016638 67016638 C T ABCA9 Missense_Mutation p.E831K 0.38 tolerated(0.14) benign(0.014) TCGA-28-1747-01 18 47101837 47101837 C T LIPG Missense_Mutation p.R224C 0.37 deleterious(0.01) benign(0.052) TCGA-28-1747-01 19 35500871 35500871 T C GRAMD1A Missense_Mutation p.I107T 0.39 deleterious(0.01) possibly_damaging(0.874) TCGA-28-1747-01 19 36381576 36381576 G C NFKBID Intron 0.14 TCGA-28-1747-01 19 52868955 52868955 G A ZNF610 Silent p.R108R 0.30 TCGA-28-1747-01 19 55693262 55693262 C T PTPRH Missense_Mutation p.V1070I 0.32 possibly_damaging(0.899) TCGA-28-1747-01 19 6495585 6495585 G A TUBB4A Missense_Mutation p.R309C 0.30 deleterious_low_confidence(0.02) benign(0.358) TCGA-28-1747-01 19 9073488 9073488 G T MUC16 Missense_Mutation p.T4653K 0.38 unknown(0) TCGA-28-1747-01 1 114454356 114454356 G A DCLRE1B Nonsense_Mutation p.W381* 0.40 TCGA-28-1747-01 1 186948519 186948519 T G PLA2G4A Missense_Mutation p.F678C 0.36 deleterious(0) probably_damaging(0.91) TCGA-28-1747-01 1 86954794 86954794 A G CLCA1 Missense_Mutation p.H433R 0.33 deleterious(0) probably_damaging(1) TCGA-28-1747-01 20 49576424 49576424 G C MOCS3 Missense_Mutation p.A349P 0.34 tolerated(0.28) benign(0.002) TCGA-28-1747-01 20 853677 853677 G A ANGPT4 Missense_Mutation p.R480C 0.35 deleterious(0) probably_damaging(1) TCGA-28-1747-01 21 45798938 45798938 G A TRPM2 Missense_Mutation p.R358H 0.34 deleterious(0) probably_damaging(0.983) TCGA-28-1747-01 2 102988458 102988459 AC - IL18R1 Frame_Shift_Del p.H117Qfs*5 0.28 TCGA-28-1747-01 2 18766137 18766137 C T NT5C1B Silent p.S182S 0.44 TCGA-28-1747-01 2 188223966 188223966 A T CALCRL Missense_Mutation p.I272N 0.31 deleterious(0) possibly_damaging(0.547) TCGA-28-1747-01 2 203397336 203397336 A G BMPR2 Missense_Mutation p.E386G 0.37 deleterious(0) probably_damaging(1) TCGA-28-1747-01 2 224463759 224463759 T C SCG2 Missense_Mutation p.Y81C 0.37 deleterious(0.01) probably_damaging(0.983) TCGA-28-1747-01 2 29072824 29072824 C T TRMT61B 3'UTR 0.33 TCGA-28-1747-01 2 89160079 89160079 C T IGKC 5'Flank 0.08 TCGA-28-1747-01 3 120347082 120347082 G A HGD 3'UTR 0.37 TCGA-28-1747-01 3 98072818 98072818 G A OR5K4 Missense_Mutation p.G41R 0.35 deleterious(0) probably_damaging(0.988) TCGA-28-1747-01 4 1018927 1018927 C T FGFRL1 Missense_Mutation p.A436V 0.09 tolerated(0.28) benign(0.028) TCGA-28-1747-01 4 128694821 128694821 G A SLC25A31 3'UTR 0.43 TCGA-28-1747-01 4 175897608 175897608 G A ADAM29 Missense_Mutation p.R311H 0.40 tolerated(0.46) benign(0.023) TCGA-28-1747-01 5 140230084 140230084 G A PCDHA9 Silent p.S668S 0.34 TCGA-28-1747-01 5 140811313 140811313 G A PCDHGA12 Silent p.A329A 0.07 TCGA-28-1747-01 5 1409844 1409844 C T SLC6A3 Missense_Mutation p.V464I 0.32 tolerated(0.21) benign(0.376) TCGA-28-1747-01 5 79768699 79768699 G A ZFYVE16 Missense_Mutation p.V1382M 0.34 deleterious(0) probably_damaging(0.958) TCGA-28-1747-01 5 80643625 80643625 C T ACOT12 Silent p.A207A 0.37 TCGA-28-1747-01 5 95735874 95735874 G A PCSK1 Nonsense_Mutation p.R405* 0.30 TCGA-28-1747-01 6 28497327 28497327 C T GPX5 Missense_Mutation p.H63Y 0.39 tolerated(1) benign(0.017) TCGA-28-1747-01 6 3850733 3850733 G A FAM50B Missense_Mutation p.A230T 0.29 tolerated(0.26) benign(0.065) TCGA-28-1747-01 7 143956670 143956670 C T OR2A7 Missense_Mutation p.V18I 0.08 tolerated(0.12) benign(0.003) TCGA-28-1747-01 7 55211079 55211079 A G EGFR Missense_Mutation p.R108G 0.06 deleterious(0) probably_damaging(1) TCGA-28-1747-01 7 55223543 55223543 C T EGFR Missense_Mutation p.H304Y 0.23 tolerated(1) benign(0.049) TCGA-28-1747-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.12 deleterious(0) possibly_damaging(0.75) TCGA-28-1747-01 7 82585035 82585035 G A PCLO Missense_Mutation p.P1745L 0.26 unknown(0) TCGA-28-1747-01 7 95442583 95442583 C T DYNC1I1 Missense_Mutation p.S100L 0.03 tolerated(0.69) benign(0.094) TCGA-28-1747-01 8 133925395 133925395 C T TG Silent p.T1421T 0.41 TCGA-28-1747-01 8 17503489 17503489 C A MTUS1 Missense_Mutation p.L1253F 0.05 tolerated(1) benign(0.001) TCGA-28-1747-01 9 117099371 117099371 C T AKNA Missense_Mutation p.R1428H 0.32 tolerated(0.1) possibly_damaging(0.512) TCGA-28-1753-01 10 32306085 32306085 T C KIF5B Missense_Mutation p.H916R 0.48 tolerated(0.08) benign(0.276) TCGA-28-1753-01 10 89720857 89720857 C A PTEN Nonsense_Mutation p.Y336* 0.36 TCGA-28-1753-01 12 113313505 113313505 C T RPH3A Missense_Mutation p.P302L 0.26 tolerated(0.15) benign(0.032) TCGA-28-1753-01 12 21201718 21201718 C T SLCO1B7 Missense_Mutation p.S356F 0.38 deleterious(0.01) possibly_damaging(0.73) TCGA-28-1753-01 12 77426878 77426878 A G E2F7 Missense_Mutation p.I445T 0.32 deleterious(0.03) benign(0.031) TCGA-28-1753-01 13 30110213 30110213 A G SLC7A1 Missense_Mutation p.V38A 0.28 deleterious(0.01) probably_damaging(0.999) TCGA-28-1753-01 13 46287863 46287863 G A SPERT Missense_Mutation p.A235T 0.35 tolerated(0.23) benign(0.019) TCGA-28-1753-01 15 24921157 24921157 G A NPAP1 Missense_Mutation p.R48H 0.18 tolerated(0.38) possibly_damaging(0.715) TCGA-28-1753-01 15 51031880 51031880 A G SPPL2A Silent p.L244L 0.26 TCGA-28-1753-01 15 71128745 71128745 G A LARP6 Silent p.I100I 0.39 TCGA-28-1753-01 16 820272 820272 C T MSLNL Missense_Mutation p.V905M 0.35 benign(0.397) TCGA-28-1753-01 17 26939067 26939067 C T SGK494 Missense_Mutation p.V230M 0.07 tolerated(0.05) probably_damaging(0.988) TCGA-28-1753-01 17 51901460 51901460 T A KIF2B Missense_Mutation p.F356I 0.27 deleterious(0) probably_damaging(0.999) TCGA-28-1753-01 17 72916669 72916669 C T USH1G Missense_Mutation p.G88R 0.22 deleterious(0) probably_damaging(1) TCGA-28-1753-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.21 tolerated(0.13) possibly_damaging(0.631) TCGA-28-1753-01 17 76502887 76502887 G A DNAH17 Missense_Mutation p.T1569M 0.26 possibly_damaging(0.527) TCGA-28-1753-01 19 38655177 38655177 G T SIPA1L3 Missense_Mutation p.S1280I 0.31 deleterious(0) probably_damaging(0.993) TCGA-28-1753-01 19 45911857 45911857 C T CD3EAP Missense_Mutation p.R211W 0.15 deleterious(0.02) probably_damaging(0.957) TCGA-28-1753-01 19 54780739 54780739 C T LILRB2 Missense_Mutation p.V469I 0.04 tolerated(0.1) benign(0.054) TCGA-28-1753-01 19 55146136 55146136 G A LILRB1 Missense_Mutation p.V470I 0.15 tolerated(0.06) benign(0.016) TCGA-28-1753-01 1 13719043 13719044 - T PRAMEF17 3'UTR 0.21 TCGA-28-1753-01 1 161682005 161682005 C T FCRLA Nonsense_Mutation p.Q284* 0.24 TCGA-28-1753-01 1 237754030 237754030 A G RYR2 Missense_Mutation p.M1300V 0.29 benign(0.003) TCGA-28-1753-01 1 32086485 32086485 C T HCRTR1 Silent p.I140I 0.16 TCGA-28-1753-01 1 47512186 47512186 C T CYP4X1 Missense_Mutation p.T374M 0.37 tolerated(0.05) benign(0.049) TCGA-28-1753-01 1 47606460 47606460 C T CYP4A22 Silent p.H68H 0.20 TCGA-28-1753-01 1 51439583 51439583 C - CDKN2C Frame_Shift_Del p.E51Rfs*15 0.28 TCGA-28-1753-01 20 34843692 34843692 G T AAR2 3'UTR 0.05 TCGA-28-1753-01 21 10951337 10951337 C T TPTE Silent p.E125E 0.05 TCGA-28-1753-01 21 31986020 31986020 G T KRTAP6-1 Silent p.G68G 0.04 TCGA-28-1753-01 21 35254584 35254584 C T ITSN1 Missense_Mutation p.P1460L 0.25 deleterious(0) probably_damaging(0.995) TCGA-28-1753-01 21 47957153 47957153 C T DIP2A Silent p.N553N 0.13 TCGA-28-1753-01 22 24582099 24582099 G A SUSD2 Silent p.A485A 0.34 TCGA-28-1753-01 22 37678608 37678608 G A CYTH4 5'UTR 0.29 TCGA-28-1753-01 2 119752091 119752091 G A MARCO Missense_Mutation p.V520I 0.24 tolerated_low_confidence(0.84) unknown(0) TCGA-28-1753-01 2 152484105 152484105 C T NEB Missense_Mutation p.E3359K 0.32 benign(0.359) TCGA-28-1753-01 2 170044684 170044684 C T LRP2 Missense_Mutation p.G3042R 0.26 probably_damaging(0.997) TCGA-28-1753-01 2 179437646 179437646 C T TTN Missense_Mutation p.E24405K 0.35 TCGA-28-1753-01 2 182360569 182360569 C T ITGA4 Missense_Mutation p.T482M 0.32 deleterious(0.02) probably_damaging(1) TCGA-28-1753-01 2 215646041 215646041 C T BARD1 Missense_Mutation p.S186N 0.36 deleterious(0.03) benign(0.279) TCGA-28-1753-01 2 220342016 220342016 C T SPEG Silent p.T1526T 0.29 TCGA-28-1753-01 2 95539765 95539765 G A TEKT4 Missense_Mutation p.A209T 0.38 tolerated(0.29) benign(0.364) TCGA-28-1753-01 3 14861789 14861789 C T FGD5 Missense_Mutation p.A404V 0.29 tolerated_low_confidence(0.22) benign(0.01) TCGA-28-1753-01 4 114278539 114278539 C T ANK2 Missense_Mutation p.P2922L 0.27 benign(0.044) TCGA-28-1753-01 4 164394915 164394915 C T TKTL2 5'UTR 0.27 TCGA-28-1753-01 4 1701407 1701407 C T SLBP Missense_Mutation p.M121I 0.31 tolerated(0.18) benign(0.012) TCGA-28-1753-01 4 188924445 188924445 C G ZFP42 Missense_Mutation p.L162V 0.24 deleterious(0.04) benign(0.018) TCGA-28-1753-01 5 140563779 140563779 G T PCDHB16 Missense_Mutation p.V549L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.746) TCGA-28-1753-01 5 161580200 161580200 C T GABRG2 Silent p.D458D 0.28 TCGA-28-1753-01 6 117232121 117232121 G A RFX6 Silent p.S232S 0.34 TCGA-28-1753-01 6 44226857 44226857 A G NFKBIE 3'UTR 0.26 TCGA-28-1753-01 7 115892026 115892026 C T TES Silent p.D305D 0.21 TCGA-28-1753-01 7 141408767 141408767 C T WEE2 Missense_Mutation p.S70L 0.04 tolerated(0.16) benign(0) TCGA-28-1753-01 7 144060365 144060365 T A ARHGEF5 Missense_Mutation p.S201R 0.05 tolerated(0.2) benign(0.289) TCGA-28-1753-01 7 80300317 80300317 C T CD36 Silent p.S281S 0.20 TCGA-28-1753-01 7 80434993 80434993 G A SEMA3C Missense_Mutation p.A207V 0.03 tolerated(0.22) possibly_damaging(0.524) TCGA-28-1753-01 7 89939599 89939599 G A C7orf63 3'UTR 0.26 TCGA-28-1753-01 8 145620691 145620691 G A CPSF1 Missense_Mutation p.R1019C 0.05 deleterious(0.02) probably_damaging(0.993) TCGA-28-1753-01 8 25190203 25190203 G A DOCK5 Missense_Mutation p.A696T 0.36 deleterious(0) probably_damaging(0.943) TCGA-28-1753-01 8 25225732 25225732 C T DOCK5 Silent p.I1083I 0.34 TCGA-28-1753-01 8 90802691 90802691 A - RIPK2 3'UTR 0.23 TCGA-28-1753-01 9 6413501 6413501 A G UHRF2 Missense_Mutation p.Q4R 0.26 tolerated(0.07) benign(0.138) TCGA-28-1753-01 9 95400529 95400529 G A IPPK Missense_Mutation p.R224W 0.25 deleterious(0.04) possibly_damaging(0.766) TCGA-28-1753-01 X 102337213 102337213 G A NXF3 Missense_Mutation p.T287M 0.62 deleterious(0.05) possibly_damaging(0.899) TCGA-28-1753-01 X 107978476 107978476 C G IRS4 Missense_Mutation p.E367Q 0.04 tolerated(0.16) benign(0.325) TCGA-28-1753-01 X 37668843 37668843 T C CYBB Silent p.H495H 0.17 TCGA-28-1753-01 X 41333692 41333692 G T NYX Missense_Mutation p.G329V 0.10 deleterious(0.01) probably_damaging(0.916) TCGA-28-1753-01 X 69652284 69652284 C T GDPD2 Missense_Mutation p.R530C 0.58 deleterious(0.03) possibly_damaging(0.462) TCGA-28-2499-01 11 101323804 101323804 C A TRPC6 Missense_Mutation p.S893I 0.58 deleterious(0) probably_damaging(0.996) TCGA-28-2499-01 11 607393 607393 C T PHRF1 Missense_Mutation p.A645V 0.25 tolerated(0.06) benign(0.348) TCGA-28-2499-01 11 92531786 92531786 C T FAT3 Silent p.V1869V 0.29 TCGA-28-2499-01 12 5908717 5908717 C T ANO2 Silent p.A333A 0.29 TCGA-28-2499-01 13 114286001 114286001 C A TFDP1 Missense_Mutation p.P84T 0.70 deleterious(0.03) possibly_damaging(0.883) TCGA-28-2499-01 13 53307443 53307443 A G LECT1 Missense_Mutation p.S89P 0.79 deleterious(0.04) possibly_damaging(0.528) TCGA-28-2499-01 15 53908374 53908374 C T WDR72 Missense_Mutation p.V677I 0.45 tolerated(0.52) benign(0.001) TCGA-28-2499-01 15 63063321 63063321 C T TLN2 Silent p.G1785G 0.43 TCGA-28-2499-01 16 10788283 10788283 A G TEKT5 Missense_Mutation p.F150L 0.41 deleterious(0) probably_damaging(0.989) TCGA-28-2499-01 16 31393260 31393260 G A ITGAX 3'UTR 0.46 TCGA-28-2499-01 16 339566 339566 G A AXIN1 Missense_Mutation p.P779L 0.43 tolerated(0.39) benign(0.002) TCGA-28-2499-01 16 81219137 81219137 G A PKD1L2 5'Flank 0.28 TCGA-28-2499-01 17 26822743 26822743 C T SLC13A2 Missense_Mutation p.A509V 0.45 tolerated(0.5) benign(0.019) TCGA-28-2499-01 17 39296555 39296555 C T KRTAP4-6 Missense_Mutation p.R62H 0.32 tolerated(0.13) unknown(0) TCGA-28-2499-01 17 80011213 80011213 G A GPS1 Missense_Mutation p.V73I 0.41 tolerated(0.22) benign(0.001) TCGA-28-2499-01 19 11408879 11408879 C T TSPAN16 Missense_Mutation p.T44M 0.04 tolerated(0.09) probably_damaging(0.994) TCGA-28-2499-01 19 13050871 13050871 C T CALR Silent p.P134P 0.44 TCGA-28-2499-01 19 49535827 49535827 C T CGB2 Missense_Mutation p.R26W 0.22 tolerated(0.19) benign(0.01) TCGA-28-2499-01 1 150727568 150727568 C T CTSS Missense_Mutation p.R103K 0.45 tolerated(0.42) benign(0.008) TCGA-28-2499-01 1 156025122 156025122 C T LAMTOR2 Missense_Mutation p.A46V 0.06 deleterious(0) possibly_damaging(0.833) TCGA-28-2499-01 20 25655873 25655873 G - ZNF337 Frame_Shift_Del p.P684Lfs*49 0.40 TCGA-28-2499-01 20 43559261 43559261 T A PABPC1L Nonsense_Mutation p.L378* 0.47 TCGA-28-2499-01 2 234967547 234967547 G A SPP2 Missense_Mutation p.R93K 0.42 tolerated(0.47) benign(0.175) TCGA-28-2499-01 4 47886362 47886362 C T NFXL1 Splice_Site p.X639_splice 0.06 TCGA-28-2499-01 4 79402982 79402982 G A FRAS1 Missense_Mutation p.R2823H 0.42 probably_damaging(0.987) TCGA-28-2499-01 5 170837615 170837615 A G NPM1 3'UTR 0.43 TCGA-28-2499-01 5 26902807 26902807 G T CDH9 Missense_Mutation p.T344N 0.48 tolerated(0.07) benign(0.001) TCGA-28-2499-01 5 71618025 71618025 G A PTCD2 Missense_Mutation p.V52M 0.36 deleterious(0.03) possibly_damaging(0.611) TCGA-28-2499-01 6 32782892 32782892 C T HLA-DOB Missense_Mutation p.S97N 0.49 tolerated(0.24) benign(0.066) TCGA-28-2499-01 6 54806575 54806575 C T FAM83B Missense_Mutation p.R936C 0.38 deleterious(0) probably_damaging(1) TCGA-28-2499-01 7 107746315 107746315 C T LAMB4 Missense_Mutation p.E273K 0.26 tolerated(0.09) benign(0.006) TCGA-28-2499-01 7 44611974 44611974 G A DDX56 Missense_Mutation p.A206V 0.24 tolerated(0.11) benign(0.061) TCGA-28-2499-01 7 77756518 77756518 G T MAGI2 Missense_Mutation p.P1140H 0.12 tolerated(0.05) possibly_damaging(0.847) TCGA-28-2499-01 8 143928002 143928002 G A GML Missense_Mutation p.D125N 0.45 tolerated(0.06) possibly_damaging(0.905) TCGA-28-2499-01 8 22005999 22005999 G A LGI3 Missense_Mutation p.R441C 0.35 tolerated(0.09) probably_damaging(0.997) TCGA-28-2499-01 8 32599524 32599524 A G NRG1 Intron 0.05 TCGA-28-2501-01 10 26465747 26465747 C T MYO3A Nonsense_Mutation p.R1471* 0.17 TCGA-28-2501-01 11 55606359 55606359 T C OR5D16 Silent p.N44N 0.14 TCGA-28-2501-01 11 56431688 56431688 A G OR5AR1 Missense_Mutation p.H176R 0.16 deleterious(0) possibly_damaging(0.859) TCGA-28-2501-01 11 76372493 76372493 C T LRRC32 Silent p.P48P 0.12 TCGA-28-2501-01 12 56119258 56119258 C T CD63 3'Flank 0.21 TCGA-28-2501-01 12 71078010 71078010 G A PTPRR Missense_Mutation p.T465M 0.13 deleterious(0) probably_damaging(1) TCGA-28-2501-01 13 43181057 43181057 C T TNFSF11 3'UTR 0.15 TCGA-28-2501-01 14 21897194 21897194 G A CHD8 Nonsense_Mutation p.Q382* 0.16 TCGA-28-2501-01 15 20588555 20588555 G C HERC2P3 RNA 0.12 TCGA-28-2501-01 15 43499515 43499515 C T EPB42 Silent p.E430E 0.08 TCGA-28-2501-01 15 75198690 75198690 C T FAM219B Silent p.L77L 0.22 TCGA-28-2501-01 17 11650946 11650946 C T DNAH9 Missense_Mutation p.S2158L 0.16 possibly_damaging(0.904) TCGA-28-2501-01 17 45376748 45376748 C T ITGB3 Missense_Mutation p.R589C 0.18 tolerated(0.07) benign(0.034) TCGA-28-2501-01 17 49062314 49062314 C T SPAG9 Missense_Mutation p.G1020S 0.13 deleterious(0.02) possibly_damaging(0.616) TCGA-28-2501-01 17 72521999 72521999 C T CD300LB Silent p.T123T 0.12 TCGA-28-2501-01 17 74005267 74005267 G A EVPL Missense_Mutation p.A1340V 0.23 tolerated(1) benign(0.017) TCGA-28-2501-01 17 7643079 7643079 G A DNAH2 Missense_Mutation p.R400H 0.20 probably_damaging(1) TCGA-28-2501-01 17 77073797 77073797 G T ENGASE Silent p.S89S 0.15 TCGA-28-2501-01 19 6479059 6479059 G A DENND1C Missense_Mutation p.P62L 0.17 tolerated(0.07) probably_damaging(0.971) TCGA-28-2501-01 19 9069613 9069613 C T MUC16 Missense_Mutation p.A5945T 0.11 unknown(0) TCGA-28-2501-01 1 1222931 1222931 A G SCNN1D Missense_Mutation p.T452A 0.15 deleterious(0) probably_damaging(0.971) TCGA-28-2501-01 1 155264053 155264053 C T PKLR Silent p.A363A 0.11 TCGA-28-2501-01 1 167757139 167757139 C T MPZL1 Missense_Mutation p.A264V 0.10 deleterious(0) probably_damaging(0.998) TCGA-28-2501-01 1 18152553 18152553 G A ACTL8 Missense_Mutation p.V214M 0.10 deleterious(0.02) probably_damaging(0.998) TCGA-28-2501-01 1 185956672 185956672 C G HMCN1 Missense_Mutation p.S1015C 0.11 probably_damaging(0.998) TCGA-28-2501-01 1 205065884 205065884 G A RBBP5 Missense_Mutation p.S441L 0.17 tolerated(0.08) benign(0.058) TCGA-28-2501-01 1 233802400 233802400 G A KCNK1 Missense_Mutation p.V139I 0.23 tolerated(0.19) benign(0.061) TCGA-28-2501-01 1 236727841 236727841 G T HEATR1 Missense_Mutation p.S1519Y 0.20 deleterious(0) possibly_damaging(0.841) TCGA-28-2501-01 1 237947838 237947838 G A RYR2 Missense_Mutation p.V4276M 0.10 benign(0.005) TCGA-28-2501-01 1 247587842 247587842 G A NLRP3 Missense_Mutation p.R366Q 0.16 deleterious(0) probably_damaging(0.999) TCGA-28-2501-01 1 41514522 41514522 G A SCMH1 Silent p.H372H 0.16 TCGA-28-2501-01 1 53666396 53666396 C T CPT2 Missense_Mutation p.P53L 0.17 deleterious(0) probably_damaging(0.995) TCGA-28-2501-01 20 54824818 54824818 C T MC3R Missense_Mutation p.R307C 0.14 deleterious(0.01) probably_damaging(0.999) TCGA-28-2501-01 21 10969096 10969096 C T TPTE Missense_Mutation p.R51Q 0.04 tolerated(0.67) benign(0.001) TCGA-28-2501-01 21 45948429 45948429 C T TSPEAR Silent p.P276P 0.16 TCGA-28-2501-01 22 26228907 26228907 C A MYO18B Missense_Mutation p.D1001E 0.12 tolerated(0.21) benign(0.071) TCGA-28-2501-01 22 42952641 42952641 C T SERHL2 Intron 0.16 TCGA-28-2501-01 22 45204277 45204277 C T ARHGAP8 Silent p.S208S 0.10 TCGA-28-2501-01 2 108604723 108604723 C T SLC5A7 Missense_Mutation p.R38C 0.08 deleterious(0.03) possibly_damaging(0.462) TCGA-28-2501-01 2 128366343 128366343 C T MYO7B Missense_Mutation p.R902C 0.09 deleterious(0) possibly_damaging(0.77) TCGA-28-2501-01 2 131976471 131976471 G A POTEE Missense_Mutation p.V166M 0.07 tolerated_low_confidence(0.38) probably_damaging(0.971) TCGA-28-2501-01 2 179542438 179542438 C T TTN Missense_Mutation p.E11401K 0.19 TCGA-28-2501-01 2 179639038 179639038 C T TTN Missense_Mutation p.R2318H 0.14 TCGA-28-2501-01 2 180634501 180634501 G A ZNF385B 5'UTR 0.12 TCGA-28-2501-01 2 225670162 225670162 T C DOCK10 Missense_Mutation p.N1300S 0.19 tolerated(1) benign(0.003) TCGA-28-2501-01 3 134851749 134851749 C A EPHB1 Silent p.G385G 0.16 TCGA-28-2501-01 3 156009880 156009881 AA - KCNAB1 Intron 0.15 TCGA-28-2501-01 3 183824082 183824082 G A HTR3E Silent p.A390A 0.27 TCGA-28-2501-01 3 185975697 185975697 G A DGKG Missense_Mutation p.R486C 0.20 deleterious(0) probably_damaging(1) TCGA-28-2501-01 3 197238913 197238913 C T BDH1 Silent p.T295T 0.13 TCGA-28-2501-01 3 49849871 49849871 C T UBA7 Missense_Mutation p.D222N 0.15 tolerated(0.13) benign(0.005) TCGA-28-2501-01 4 71472354 71472354 G A AMBN Silent p.T417T 0.14 TCGA-28-2501-01 5 148617052 148617052 G T ABLIM3 Silent p.A310A 0.20 TCGA-28-2501-01 5 168620553 168620553 G A SLIT3 Missense_Mutation p.R115C 0.13 deleterious(0) probably_damaging(0.999) TCGA-28-2501-01 5 3600344 3600344 G A IRX1 Missense_Mutation p.A428T 0.21 tolerated(0.31) benign(0.05) TCGA-28-2501-01 5 79026546 79026546 T C CMYA5 Missense_Mutation p.L653P 0.13 benign(0.226) TCGA-28-2501-01 6 30682871 30682871 C T MDC1 Missense_Mutation p.V28M 0.17 deleterious(0.02) benign(0.022) TCGA-28-2501-01 6 30711832 30711832 C T IER3 Missense_Mutation p.A118T 0.06 tolerated(0.36) benign(0.006) TCGA-28-2501-01 6 74171518 74171519 - T MTO1 5'UTR 0.15 TCGA-28-2501-01 7 146997320 146997320 C T CNTNAP2 Missense_Mutation p.A479V 0.13 tolerated(0.07) benign(0.219) TCGA-28-2501-01 7 33397475 33397475 C T BBS9 Nonsense_Mutation p.R521* 0.21 TCGA-28-2501-01 7 86815172 86815172 A G DMTF1 Silent p.E359E 0.15 TCGA-28-2501-01 9 101533299 101533299 G A ANKS6 Silent p.S617S 0.18 TCGA-28-2501-01 9 136918434 136918434 C T BRD3 Missense_Mutation p.A56T 0.16 deleterious(0) probably_damaging(0.935) TCGA-28-2501-01 9 404947 404947 G A DOCK8 Silent p.T1088T 0.17 TCGA-28-2501-01 X 147088330 147088330 C T FMR1NB Missense_Mutation p.T169M 0.34 tolerated(0.12) possibly_damaging(0.897) TCGA-28-2502-01 10 101835788 101835788 C T CPN1 Silent p.S100S 0.28 TCGA-28-2502-01 10 89690805 89690805 G A PTEN Missense_Mutation p.C71Y 0.30 deleterious(0) probably_damaging(0.999) TCGA-28-2502-01 11 102713433 102713433 G A MMP3 Missense_Mutation p.P107L 0.42 deleterious(0.01) benign(0.158) TCGA-28-2502-01 11 18369172 18369172 C G GTF2H1 Missense_Mutation p.S292C 0.24 deleterious(0.01) possibly_damaging(0.469) TCGA-28-2502-01 11 33049298 33049299 TC - DEPDC7 Frame_Shift_Del p.L178Efs*22 0.27 TCGA-28-2502-01 12 416884 416884 C T KDM5A Silent p.R1222R 0.27 TCGA-28-2502-01 12 4854745 4854745 A C GALNT8 Silent p.A337A 0.20 TCGA-28-2502-01 13 76301190 76301190 G A RP11-29G8.3 RNA 0.30 TCGA-28-2502-01 14 60938273 60938273 G A C14orf39 Nonsense_Mutation p.R170* 0.08 TCGA-28-2502-01 15 20657691 20657691 G A HERC2P3 RNA 0.10 TCGA-28-2502-01 15 33855071 33855071 C T RYR3 Nonsense_Mutation p.R336* 0.28 TCGA-28-2502-01 15 41488149 41488149 T G EXD1 Missense_Mutation p.E149D 0.28 deleterious(0) probably_damaging(0.99) TCGA-28-2502-01 16 1507256 1507256 T C CLCN7 Missense_Mutation p.K274R 0.32 tolerated(0.33) benign(0.007) TCGA-28-2502-01 16 30977133 30977133 C G SETD1A Missense_Mutation p.P644R 0.31 probably_damaging(0.937) TCGA-28-2502-01 16 73127035 73127035 C T HCCAT5 RNA 0.21 TCGA-28-2502-01 17 29496924 29496927 TGTT - NF1 Frame_Shift_Del p.C167Qfs*10 0.36 TCGA-28-2502-01 17 39644595 39644595 C T KRT36 Missense_Mutation p.R200H 0.27 tolerated(0.12) probably_damaging(0.966) TCGA-28-2502-01 17 67212489 67212489 C A ABCA10 Nonsense_Mutation p.G181* 0.20 TCGA-28-2502-01 19 15132710 15132710 G A CCDC105 Silent p.P410P 0.26 TCGA-28-2502-01 19 15648391 15648391 G A CYP4F22 Missense_Mutation p.R156H 0.22 deleterious(0.02) probably_damaging(0.999) TCGA-28-2502-01 19 2877814 2877814 G A ZNF556 Silent p.P286P 0.16 TCGA-28-2502-01 19 35940986 35940986 C T FFAR2 Silent p.L124L 0.23 TCGA-28-2502-01 19 39098515 39098515 G A MAP4K1 Silent p.D382D 0.08 TCGA-28-2502-01 19 46275974 46275974 C T DMPK Silent p.L433L 0.09 TCGA-28-2502-01 1 11188183 11188183 C T MTOR Missense_Mutation p.A1971T 0.15 deleterious(0) probably_damaging(0.989) TCGA-28-2502-01 1 120438173 120438173 G A ADAM30 Missense_Mutation p.R263C 0.27 tolerated(0.16) probably_damaging(0.935) TCGA-28-2502-01 1 152277058 152277058 C T FLG Missense_Mutation p.R3435H 0.24 unknown(0) TCGA-28-2502-01 1 22973963 22973963 C T C1QC Missense_Mutation p.A142V 0.23 tolerated(0.09) benign(0.006) TCGA-28-2502-01 1 32279589 32279589 C T SPOCD1 Missense_Mutation p.R449K 0.23 tolerated(0.26) benign(0.002) TCGA-28-2502-01 1 85331474 85331474 G A LPAR3 Silent p.D110D 0.28 TCGA-28-2502-01 1 85564213 85564213 C G WDR63 Missense_Mutation p.P451A 0.24 tolerated(0.11) benign(0.298) TCGA-28-2502-01 20 57766702 57766702 G A ZNF831 Missense_Mutation p.G210R 0.23 deleterious(0) probably_damaging(0.983) TCGA-28-2502-01 21 34799266 34799266 T C IFNGR2 Missense_Mutation p.F163S 0.22 deleterious(0) probably_damaging(1) TCGA-28-2502-01 22 32828360 32828360 G A BPIFC Silent p.F383F 0.20 TCGA-28-2502-01 22 36696181 36696181 G A MYH9 Silent p.L990L 0.22 TCGA-28-2502-01 22 38617546 38617546 C T TMEM184B Missense_Mutation p.R385H 0.14 tolerated(0.07) benign(0.003) TCGA-28-2502-01 22 42191460 42191460 G C MEI1 Missense_Mutation p.G1194R 0.19 tolerated(0.32) benign(0.009) TCGA-28-2502-01 22 50617532 50617532 C T PANX2 Silent p.N620N 0.36 TCGA-28-2502-01 3 100365559 100365559 T C GPR128 Silent p.A419A 0.25 TCGA-28-2502-01 3 122003132 122003132 C T CASR Silent p.I787I 0.26 TCGA-28-2502-01 3 13679189 13679189 G A FBLN2 Missense_Mutation p.A1156T 0.25 tolerated(0.08) benign(0.3) TCGA-28-2502-01 3 38833608 38833608 G A SCN10A Missense_Mutation p.R108W 0.24 tolerated(0.09) benign(0.021) TCGA-28-2502-01 4 106604288 106604288 C T INTS12 Missense_Mutation p.V331M 0.24 tolerated(0.08) benign(0.1) TCGA-28-2502-01 4 70146911 70146911 G T UGT2B28 Missense_Mutation p.K231N 0.19 tolerated(0.24) benign(0.05) TCGA-28-2502-01 5 177548892 177548892 G T N4BP3 Nonsense_Mutation p.G509* 0.12 TCGA-28-2502-01 5 19544080 19544080 A T CDH18 Missense_Mutation p.F430I 0.25 tolerated(0.63) benign(0.02) TCGA-28-2502-01 5 71490832 71490832 A G MAP1B Silent p.K550K 0.29 TCGA-28-2502-01 6 152527476 152527476 G A SYNE1 Missense_Mutation p.R7616W 0.18 probably_damaging(0.986) TCGA-28-2502-01 6 167709567 167709567 C T UNC93A Missense_Mutation p.P106L 0.23 deleterious(0.02) possibly_damaging(0.751) TCGA-28-2502-01 6 25727356 25727356 C T HIST1H2BA Missense_Mutation p.R74C 0.31 tolerated_low_confidence(0.12) possibly_damaging(0.646) TCGA-28-2502-01 6 26184091 26184093 AGA - HIST1H2BE In_Frame_Del p.K25del 0.29 TCGA-28-2502-01 6 30121907 30121907 G A TRIM10 Missense_Mutation p.R429W 0.09 tolerated(0.05) possibly_damaging(0.904) TCGA-28-2502-01 6 31474137 31474137 C T MICB Silent p.R181R 0.30 TCGA-28-2502-01 6 46797155 46797155 G A MEP1A Missense_Mutation p.E331K 0.21 deleterious(0) probably_damaging(1) TCGA-28-2502-01 6 46845996 46845996 C A GPR116 Missense_Mutation p.G395C 0.18 tolerated(0.05) benign(0.246) TCGA-28-2502-01 7 100696360 100696360 C T MUC17 Silent p.V4399V 0.21 TCGA-28-2502-01 7 1015150 1015150 G A COX19 5'UTR 0.16 TCGA-28-2502-01 7 138391228 138391228 G A ATP6V0A4 3'UTR 0.33 TCGA-28-2502-01 7 143929644 143929644 G A OR2A42 Missense_Mutation p.T98M 0.46 tolerated(0.75) benign(0.002) TCGA-28-2502-01 7 144098530 144098530 G A NOBOX Silent p.T151T 0.17 TCGA-28-2502-01 7 4153883 4153883 T C SDK1 Missense_Mutation p.V1267A 0.21 tolerated(0.29) benign(0.022) TCGA-28-2502-01 7 63727109 63727109 T A ZNF679 Silent p.T366T 0.09 TCGA-28-2502-01 8 131140283 131140283 C T ASAP1 Missense_Mutation p.R424H 0.19 tolerated(0.06) benign(0.217) TCGA-28-2502-01 8 3351196 3351196 A G CSMD1 Missense_Mutation p.L466P 0.19 benign(0.283) TCGA-28-2502-01 9 101530471 101530471 T A ANKS6 Missense_Mutation p.L678F 0.16 deleterious(0) probably_damaging(0.986) TCGA-28-2502-01 9 117014903 117014903 G A COL27A1 Missense_Mutation p.V1022M 0.22 unknown(0) TCGA-28-2502-01 X 34962109 34962109 G A FAM47B Silent p.P387P 0.57 TCGA-28-2509-01 10 1175351 1175351 C T WDR37 3'UTR 0.16 TCGA-28-2509-01 10 135053299 135053299 C T VENTX Missense_Mutation p.R121W 0.76 deleterious(0.03) probably_damaging(1) TCGA-28-2509-01 10 89717607 89717607 C A PTEN Intron 0.81 TCGA-28-2509-01 11 113672259 113672259 C T USP28 Missense_Mutation p.A1002T 0.31 tolerated(0.06) probably_damaging(0.977) TCGA-28-2509-01 11 125788549 125788549 C T DDX25 Silent p.T355T 0.38 TCGA-28-2509-01 11 126147747 126147747 G C FOXRED1 3'UTR 0.71 TCGA-28-2509-01 11 48346680 48346680 C T OR4C3 Missense_Mutation p.T63M 0.30 deleterious(0.01) probably_damaging(0.92) TCGA-28-2509-01 11 48510660 48510660 G A OR4A47 Missense_Mutation p.G106S 0.36 deleterious_low_confidence(0.03) benign(0.174) TCGA-28-2509-01 11 55681751 55681751 A G OR5W2 Missense_Mutation p.V103A 0.40 tolerated(0.05) benign(0.017) TCGA-28-2509-01 11 62400735 62400735 C T GANAB Silent p.E235E 0.44 TCGA-28-2509-01 12 100451481 100451482 AG - UHRF1BP1L Frame_Shift_Del p.V1099Ffs*3 0.11 TCGA-28-2509-01 12 113737741 113737741 G A SLC8B1 Silent p.G532G 0.38 TCGA-28-2509-01 12 118105354 118105354 G A KSR2 Missense_Mutation p.R366C 0.18 deleterious(0.01) possibly_damaging(0.854) TCGA-28-2509-01 12 120628101 120628101 C T GCN1L1 Missense_Mutation p.D41N 0.49 benign(0.165) TCGA-28-2509-01 12 13241685 13241685 C T GSG1 Intron 0.18 TCGA-28-2509-01 12 40618993 40618996 AGTC - LRRK2 Frame_Shift_Del p.V21Gfs*2 0.52 TCGA-28-2509-01 12 41831766 41831766 C T PDZRN4 Intron 0.47 TCGA-28-2509-01 12 70928634 70928634 G A PTPRB Silent p.I2061I 0.52 TCGA-28-2509-01 12 80735883 80735883 G A OTOGL Missense_Mutation p.D1727N 0.82 tolerated(0.35) benign(0.009) TCGA-28-2509-01 13 52728302 52728302 A G NEK3 Missense_Mutation p.S42P 0.84 deleterious(0.02) benign(0.068) TCGA-28-2509-01 15 25337004 25337004 G A SNORD116-23 RNA 0.37 TCGA-28-2509-01 15 30053400 30053400 G A TJP1 Nonsense_Mutation p.Q318* 0.53 TCGA-28-2509-01 15 74708161 74708161 C T SEMA7A Missense_Mutation p.G323S 0.45 deleterious(0) probably_damaging(1) TCGA-28-2509-01 16 21080833 21080833 G A DNAH3 Missense_Mutation p.P1095L 0.59 deleterious(0) probably_damaging(0.999) TCGA-28-2509-01 16 30021466 30021467 - GATGGGCCGGATGGGCCC DOC2A In_Frame_Ins p.I26delinsMGPSGPS 0.17 TCGA-28-2509-01 16 30749342 30749342 G - SRCAP Frame_Shift_Del p.D2661Mfs*17 0.42 TCGA-28-2509-01 16 32265139 32265139 C T TP53TG3D Intron 0.22 TCGA-28-2509-01 16 3458790 3458790 G A ZNF174 Silent p.R365R 0.06 TCGA-28-2509-01 16 56678077 56678077 C T MT1A 3'Flank 0.48 TCGA-28-2509-01 16 67683468 67683468 G A RLTPR Missense_Mutation p.G622E 0.25 tolerated(0.11) probably_damaging(0.999) TCGA-28-2509-01 16 818752 818752 G A MSLN 3'UTR 0.35 TCGA-28-2509-01 17 7577556 7577556 C T TP53 Missense_Mutation p.C242Y 0.81 deleterious(0) probably_damaging(1) TCGA-28-2509-01 18 72226676 72226676 G A CNDP1 Missense_Mutation p.R91H 0.29 deleterious(0.04) benign(0.001) TCGA-28-2509-01 19 12979571 12979571 G A MAST1 Missense_Mutation p.G894E 0.57 deleterious_low_confidence(0.03) possibly_damaging(0.642) TCGA-28-2509-01 19 20808078 20808078 T A ZNF626 Missense_Mutation p.K202I 0.46 deleterious(0.04) benign(0.017) TCGA-28-2509-01 19 47258817 47258817 G A FKRP Missense_Mutation p.R37Q 0.59 tolerated(0.62) benign(0.011) TCGA-28-2509-01 19 54724484 54724484 G A LILRB3 Missense_Mutation p.A391V 0.13 deleterious(0.03) benign(0.024) TCGA-28-2509-01 19 54744236 54744236 G A LILRA6 Missense_Mutation p.A391V 0.18 deleterious(0.05) benign(0.334) TCGA-28-2509-01 19 5776309 5776309 C T CATSPERD Silent p.I693I 0.57 TCGA-28-2509-01 19 9090864 9090864 G A MUC16 Silent p.A317A 0.51 TCGA-28-2509-01 1 1337347 1337347 C T RP4-758J18.2 3'Flank 0.62 TCGA-28-2509-01 1 157765807 157765807 T C FCRL1 3'UTR 0.32 TCGA-28-2509-01 1 159175495 159175495 G A DARC Missense_Mutation p.R91H 0.53 tolerated(1) benign(0.002) TCGA-28-2509-01 1 201980232 201980232 T A ELF3 5'UTR 0.29 TCGA-28-2509-01 1 201980248 201980248 T C ELF3 5'UTR 0.32 TCGA-28-2509-01 1 228529316 228529316 G A OBSCN Splice_Site p.X6969_splice 0.32 TCGA-28-2509-01 21 39764312 39764312 G A ERG Missense_Mutation p.T274M 0.61 tolerated(0.19) benign(0.004) TCGA-28-2509-01 2 166611230 166611230 G A GALNT3 Silent p.S511S 0.41 TCGA-28-2509-01 2 231328786 231328786 C - SP100 Frame_Shift_Del p.N355Ifs*6 0.32 TCGA-28-2509-01 3 108572602 108572602 G A TRAT1 Missense_Mutation p.V147I 0.33 tolerated(0.53) benign(0.001) TCGA-28-2509-01 3 122274913 122274913 G C PARP9 Missense_Mutation p.D70E 0.55 tolerated(0.28) benign(0.015) TCGA-28-2509-01 3 143567291 143567291 C G SLC9A9 5'UTR 0.41 TCGA-28-2509-01 4 187522529 187522529 G A FAT1 Missense_Mutation p.T3845M 0.05 benign(0) TCGA-28-2509-01 4 55564507 55564507 C T KIT Missense_Mutation p.T132M 0.11 deleterious(0.04) possibly_damaging(0.588) TCGA-28-2509-01 4 70592883 70592883 C T SULT1B1 Missense_Mutation p.A272T 0.20 deleterious(0.03) benign(0.217) TCGA-28-2509-01 4 79447726 79447726 C G FRAS1 Missense_Mutation p.L3614V 0.70 possibly_damaging(0.829) TCGA-28-2509-01 5 140553530 140553530 G C PCDHB7 Missense_Mutation p.D372H 0.48 deleterious_low_confidence(0) probably_damaging(1) TCGA-28-2509-01 5 150639411 150639411 C T GM2A Silent p.I59I 0.48 TCGA-28-2509-01 5 150922530 150922530 C G FAT2 Missense_Mutation p.D2720H 0.31 probably_damaging(0.972) TCGA-28-2509-01 5 168233574 168233574 G T SLIT3 Missense_Mutation p.P271Q 0.47 tolerated(0.32) benign(0.157) TCGA-28-2509-01 5 169535115 169535115 C T FOXI1 Missense_Mutation p.R213C 0.33 deleterious(0) probably_damaging(0.956) TCGA-28-2509-01 6 157495209 157495209 C T ARID1B Silent p.D1031D 0.05 TCGA-28-2509-01 7 127222986 127222986 A G GCC1 Silent p.A470A 0.31 TCGA-28-2509-01 7 143771552 143771552 G A OR2A25 Missense_Mutation p.M80I 0.10 deleterious(0.04) benign(0.291) TCGA-28-2509-01 7 150737710 150737710 C G ABCB8 Missense_Mutation p.N459K 0.17 deleterious(0.01) possibly_damaging(0.689) TCGA-28-2509-01 8 143425640 143425640 G A TSNARE1 Silent p.H144H 0.45 TCGA-28-2509-01 8 48869810 48869810 C T PRKDC Missense_Mutation p.R82K 0.13 possibly_damaging(0.623) TCGA-28-2509-01 8 8235473 8235473 G T SGK223 Missense_Mutation p.P149H 0.18 benign(0.258) TCGA-28-2509-01 9 139959203 139959203 C T SAPCD2 Missense_Mutation p.E365K 0.29 deleterious(0) probably_damaging(0.988) TCGA-28-2509-01 9 14720069 14720069 G A CER1 3'UTR 0.09 TCGA-28-2509-01 9 40772759 40772759 G A ZNF658 Missense_Mutation p.T839I 0.41 tolerated(0.06) probably_damaging(0.994) TCGA-28-2509-01 X 102931771 102931771 C T MORF4L2 Missense_Mutation p.R62H 0.33 tolerated(0.12) benign(0) TCGA-28-2509-01 X 107084129 107084129 C T MID2 Silent p.T78T 0.59 TCGA-28-2509-01 X 11139917 11139917 G A HCCS Missense_Mutation p.R265H 0.33 deleterious(0) probably_damaging(0.993) TCGA-28-2509-01 X 119005776 119005776 G A RNF113A 5'UTR 0.24 TCGA-28-2509-01 X 129201458 129201458 G - ELF4 Frame_Shift_Del p.V411Wfs*7 0.27 TCGA-28-2509-01 X 130416634 130416634 G A IGSF1 Nonsense_Mutation p.R344* 0.29 TCGA-28-2509-01 X 134655171 134655171 C T DDX26B Silent p.R39R 0.29 TCGA-28-2509-01 X 26212632 26212632 G A MAGEB6 Silent p.K223K 0.59 TCGA-28-2509-01 X 47272290 47272290 C T ZNF157 Missense_Mutation p.P273L 0.34 deleterious(0.01) probably_damaging(1) TCGA-28-2509-01 X 49775323 49775323 A G CLCN5 Intron 0.28 TCGA-28-2510-01 10 118084588 118084588 G A CCDC172 Missense_Mutation p.R22H 0.29 tolerated(0.06) probably_damaging(0.999) TCGA-28-2510-01 10 89711900 89711900 G A PTEN Missense_Mutation p.R173H 0.14 deleterious(0.03) probably_damaging(0.913) TCGA-28-2510-01 11 108302505 108302505 G A C11orf65 Missense_Mutation p.R48C 0.08 deleterious(0.03) possibly_damaging(0.847) TCGA-28-2510-01 11 124180280 124180280 C T OR8D1 Missense_Mutation p.S128N 0.21 tolerated(1) benign(0.004) TCGA-28-2510-01 11 58318640 58318640 C T LPXN Silent p.L133L 0.11 TCGA-28-2510-01 11 62296010 62296010 A G AHNAK Missense_Mutation p.V1960A 0.15 benign(0.294) TCGA-28-2510-01 11 836108 836108 C A CD151 Silent p.T13T 0.13 TCGA-28-2510-01 12 103984799 103984799 G A STAB2 Missense_Mutation p.R69Q 0.15 tolerated(0.26) benign(0.293) TCGA-28-2510-01 12 111748209 111748209 C T CUX2 Silent p.G541G 0.25 TCGA-28-2510-01 12 130898833 130898833 C T RIMBP2 Missense_Mutation p.R830H 0.12 tolerated(0.2) benign(0.006) TCGA-28-2510-01 12 1943732 1943732 G A LRTM2 Missense_Mutation p.V320I 0.12 tolerated(1) benign(0) TCGA-28-2510-01 14 52507433 52507433 G A NID2 Silent p.Y654Y 0.09 TCGA-28-2510-01 14 73578303 73578303 T C RBM25 Silent p.F695F 0.26 TCGA-28-2510-01 15 58904096 58904096 A C ADAM10 Missense_Mutation p.C536G 0.13 deleterious(0) probably_damaging(1) TCGA-28-2510-01 16 12220512 12220512 G A SNX29 Silent p.V475V 0.15 TCGA-28-2510-01 16 27480738 27480738 C T GTF3C1 Missense_Mutation p.G1650S 0.10 deleterious(0) probably_damaging(1) TCGA-28-2510-01 18 19997766 19997766 G A CTAGE1 Silent p.P3P 0.21 TCGA-28-2510-01 18 61325755 61325755 T A SERPINB3 Missense_Mutation p.Q154L 0.05 deleterious(0) probably_damaging(0.952) TCGA-28-2510-01 19 14938368 14938368 G A OR7A5 Missense_Mutation p.S229L 0.15 deleterious_low_confidence(0.01) benign(0.33) TCGA-28-2510-01 19 40890043 40890043 T C HIPK4 Missense_Mutation p.I157V 0.15 tolerated(0.06) possibly_damaging(0.487) TCGA-28-2510-01 19 41060491 41060491 G A SPTBN4 Missense_Mutation p.E1675K 0.30 tolerated(0.16) probably_damaging(0.991) TCGA-28-2510-01 19 56372800 56372800 C A NLRP4 Silent p.T635T 0.14 TCGA-28-2510-01 1 152280065 152280065 T C FLG Missense_Mutation p.T2433A 0.13 benign(0.247) TCGA-28-2510-01 1 186057366 186057366 C T HMCN1 Missense_Mutation p.P3179S 0.07 probably_damaging(0.998) TCGA-28-2510-01 2 179633437 179633437 A G TTN Silent p.A3042A 0.07 TCGA-28-2510-01 2 44203309 44203309 G A LRPPRC Missense_Mutation p.A237V 0.08 deleterious(0.01) possibly_damaging(0.672) TCGA-28-2510-01 3 195516052 195516052 G A MUC4 Missense_Mutation p.A800V 0.17 unknown(0) TCGA-28-2510-01 4 170610366 170610366 C G CLCN3 Missense_Mutation p.I197M 0.17 tolerated(0.24) probably_damaging(0.988) TCGA-28-2510-01 4 83905798 83905798 G C LIN54 Missense_Mutation p.T67R 0.18 tolerated_low_confidence(0.11) benign(0.203) TCGA-28-2510-01 6 25606465 25606465 G A LRRC16A Missense_Mutation p.V1271I 0.12 deleterious_low_confidence(0.02) benign(0.001) TCGA-28-2510-01 7 29407575 29407575 G A CHN2 Missense_Mutation p.R39H 0.14 tolerated(0.36) probably_damaging(0.977) TCGA-28-2510-01 7 92731863 92731863 G A SAMD9 Missense_Mutation p.P1183L 0.13 tolerated(0.1) benign(0) TCGA-28-2510-01 X 148564207 148564207 C A IDS 3'UTR 0.22 TCGA-28-2510-01 X 21875351 21875351 C T YY2 Missense_Mutation p.P250L 0.30 tolerated(0.54) benign(0.001) TCGA-28-2513-01 10 101556893 101556893 G T ABCC2 Missense_Mutation p.E224D 0.06 tolerated(0.19) benign(0.053) TCGA-28-2513-01 10 89693009 89693009 G T PTEN Splice_Site p.X164_splice 0.08 TCGA-28-2513-01 10 98411291 98411291 G A PIK3AP1 Missense_Mutation p.A277V 0.11 tolerated(0.23) probably_damaging(0.977) TCGA-28-2513-01 11 103908142 103908142 C G DDI1 Missense_Mutation p.L198V 0.20 tolerated(0.12) benign(0.009) TCGA-28-2513-01 11 124440263 124440263 T A OR8A1 Missense_Mutation p.V100E 0.14 deleterious(0.05) possibly_damaging(0.646) TCGA-28-2513-01 11 55563770 55563770 C A OR5D14 Missense_Mutation p.L247M 0.10 deleterious(0.02) probably_damaging(0.941) TCGA-28-2513-01 11 6261464 6261464 C T CNGA4 Missense_Mutation p.A147V 0.14 tolerated(0.4) benign(0.001) TCGA-28-2513-01 12 121465457 121465457 C G OASL Missense_Mutation p.C274S 0.13 deleterious(0) probably_damaging(1) TCGA-28-2513-01 12 132512816 132512816 G A EP400 Silent p.L1788L 0.15 TCGA-28-2513-01 12 55524559 55524559 G C OR9K2 Nonstop_Mutation p.*336Sext*? 0.22 TCGA-28-2513-01 12 55726370 55726370 C A OR6C3 Missense_Mutation p.Q296K 0.13 tolerated_low_confidence(0.12) benign(0.05) TCGA-28-2513-01 12 70933755 70933755 C T PTPRB Missense_Mutation p.R1881Q 0.11 deleterious(0.03) possibly_damaging(0.674) TCGA-28-2513-01 12 71286587 71286587 G A PTPRR Missense_Mutation p.R77C 0.11 tolerated_low_confidence(0.07) benign(0.121) TCGA-28-2513-01 12 97073486 97073486 G A C12orf55 Missense_Mutation p.R1891Q 0.11 tolerated(0.19) benign(0.014) TCGA-28-2513-01 14 88652226 88652226 G A KCNK10 Missense_Mutation p.R429C 0.14 deleterious_low_confidence(0) possibly_damaging(0.855) TCGA-28-2513-01 14 94844696 94844696 C A SERPINA1 3'UTR 0.15 TCGA-28-2513-01 15 31197005 31197005 T C FAN1 Missense_Mutation p.C47R 0.17 deleterious(0) possibly_damaging(0.885) TCGA-28-2513-01 16 10534246 10534246 G A ATF7IP2 Missense_Mutation p.R374H 0.17 tolerated(0.1) possibly_damaging(0.731) TCGA-28-2513-01 16 20442617 20442617 C T ACSM5 Missense_Mutation p.P428S 0.09 deleterious(0.01) probably_damaging(0.993) TCGA-28-2513-01 16 31308873 31308873 C T ITGAM Silent p.D465D 0.15 TCGA-28-2513-01 16 339599 339599 G T AXIN1 Nonsense_Mutation p.S768* 0.11 TCGA-28-2513-01 16 72821854 72821854 C A ZFHX3 Nonsense_Mutation p.E3441* 0.13 TCGA-28-2513-01 16 90160884 90160884 G A TUBB8P7 RNA 0.09 TCGA-28-2513-01 17 10399320 10399320 C T MYH1 Missense_Mutation p.A1706T 0.09 deleterious(0.01) possibly_damaging(0.705) TCGA-28-2513-01 17 10427956 10427956 G A MYH2 Missense_Mutation p.R1668W 0.13 deleterious(0) probably_damaging(0.98) TCGA-28-2513-01 17 35615262 35615262 C G ACACA Missense_Mutation p.D512H 0.17 deleterious(0.05) probably_damaging(0.999) TCGA-28-2513-01 17 56294074 56294074 C T MKS1 Missense_Mutation p.E72K 0.12 tolerated(0.14) benign(0.122) TCGA-28-2513-01 17 73725429 73725429 G A ITGB4 Missense_Mutation p.R217Q 0.27 tolerated(0.16) benign(0.098) TCGA-28-2513-01 18 18547745 18547745 T A ROCK1 Nonsense_Mutation p.K1054* 0.10 TCGA-28-2513-01 18 19996798 19996798 T A CTAGE1 Missense_Mutation p.N326I 0.11 deleterious(0.01) possibly_damaging(0.514) TCGA-28-2513-01 18 28673541 28673541 G A DSC2 Silent p.A45A 0.11 TCGA-28-2513-01 18 61305084 61305084 C T SERPINB4 Missense_Mutation p.A348T 0.12 deleterious(0.03) benign(0) TCGA-28-2513-01 19 12939705 12939705 G A RTBDN Missense_Mutation p.R110C 0.11 deleterious(0) probably_damaging(0.95) TCGA-28-2513-01 19 17450006 17450006 C A GTPBP3 Missense_Mutation p.R279S 0.12 deleterious(0) probably_damaging(0.994) TCGA-28-2513-01 19 18684123 18684123 G C UBA52 Missense_Mutation p.V5L 0.07 deleterious(0.03) benign(0.003) TCGA-28-2513-01 19 49223957 49223957 A T RASIP1 3'UTR 0.25 TCGA-28-2513-01 19 54215545 54215545 G T MIR517A RNA 0.09 TCGA-28-2513-01 19 56614551 56614551 C T ZNF787 Silent p.P12P 0.09 TCGA-28-2513-01 19 57060380 57060380 G A ZFP28 Missense_Mutation p.E193K 0.14 tolerated(0.07) benign(0.02) TCGA-28-2513-01 19 8190851 8190851 C T FBN3 Missense_Mutation p.V886I 0.07 tolerated(0.2) benign(0.003) TCGA-28-2513-01 19 9068764 9068764 G T MUC16 Missense_Mutation p.L6228I 0.10 unknown(0) TCGA-28-2513-01 1 152275656 152275656 G A FLG Silent p.P3902P 0.15 TCGA-28-2513-01 1 152329436 152329436 G A FLG2 Nonsense_Mutation p.R276* 0.12 TCGA-28-2513-01 1 186114957 186114957 G A HMCN1 Missense_Mutation p.R4837Q 0.10 probably_damaging(0.979) TCGA-28-2513-01 1 201047161 201047161 G A CACNA1S Missense_Mutation p.R489C 0.10 deleterious(0.01) possibly_damaging(0.849) TCGA-28-2513-01 1 52704095 52704095 G T ZFYVE9 Missense_Mutation p.G336C 0.11 deleterious_low_confidence(0.02) possibly_damaging(0.572) TCGA-28-2513-01 20 44469563 44469563 C T SNX21 Missense_Mutation p.R245W 0.10 deleterious(0) possibly_damaging(0.614) TCGA-28-2513-01 20 47276521 47276521 C T PREX1 Missense_Mutation p.S606N 0.11 tolerated(0.15) benign(0.002) TCGA-28-2513-01 20 57767077 57767077 C T ZNF831 Missense_Mutation p.R335W 0.17 tolerated(0.06) benign(0.052) TCGA-28-2513-01 2 113940279 113940279 C T PSD4 Silent p.D82D 0.12 TCGA-28-2513-01 2 162815003 162815003 C T SLC4A10 Missense_Mutation p.P934S 0.10 deleterious(0.01) probably_damaging(1) TCGA-28-2513-01 2 179469893 179469893 T G TTN Missense_Mutation p.E18004A 0.22 TCGA-28-2513-01 2 185802437 185802437 C T ZNF804A Missense_Mutation p.R772C 0.10 deleterious(0) probably_damaging(0.985) TCGA-28-2513-01 2 204000539 204000539 T C NBEAL1 Missense_Mutation p.V1289A 0.12 tolerated(0.81) benign(0.001) TCGA-28-2513-01 2 50765581 50765581 G A NRXN1 Silent p.G691G 0.13 TCGA-28-2513-01 3 111313058 111313058 T A ZBED2 5'UTR 0.12 TCGA-28-2513-01 3 123333123 123333123 G A MYLK Silent p.D1858D 0.14 TCGA-28-2513-01 3 167035369 167035369 G C ZBBX Missense_Mutation p.L334V 0.12 tolerated(0.06) possibly_damaging(0.676) TCGA-28-2513-01 3 183665139 183665139 C A ABCC5 Silent p.A1129A 0.18 TCGA-28-2513-01 3 184044341 184044341 G A EIF4G1 Silent p.Q1090Q 0.16 TCGA-28-2513-01 4 111430927 111430927 G T ENPEP Missense_Mutation p.R386S 0.12 deleterious(0) probably_damaging(0.911) TCGA-28-2513-01 4 113353567 113353567 G A ALPK1 Missense_Mutation p.G955E 0.10 deleterious(0.01) possibly_damaging(0.796) TCGA-28-2513-01 4 15937922 15937922 A G FGFBP1 Missense_Mutation p.Y112H 0.13 deleterious(0) probably_damaging(0.999) TCGA-28-2513-01 4 159638287 159638287 A C PPID Missense_Mutation p.F133L 0.17 deleterious(0.01) probably_damaging(1) TCGA-28-2513-01 4 36168644 36168644 G C ARAP2 Missense_Mutation p.T628S 0.18 tolerated(0.09) possibly_damaging(0.868) TCGA-28-2513-01 4 40440352 40440352 C T RBM47 Missense_Mutation p.A187T 0.07 deleterious(0.03) probably_damaging(0.961) TCGA-28-2513-01 4 7043696 7043696 C A CCDC96 Nonsense_Mutation p.E324* 0.11 TCGA-28-2513-01 4 83417295 83417295 G T TMEM150C Missense_Mutation p.P97T 0.15 tolerated(0.07) probably_damaging(0.951) TCGA-28-2513-01 5 143540055 143540055 A C YIPF5 Missense_Mutation p.F227C 0.19 deleterious(0) probably_damaging(0.997) TCGA-28-2513-01 5 150921921 150921921 C T FAT2 Missense_Mutation p.E2923K 0.21 probably_damaging(0.914) TCGA-28-2513-01 5 174868628 174868628 G T DRD1 3'UTR 0.15 TCGA-28-2513-01 5 67591085 67591085 G C PIK3R1 Missense_Mutation p.D560H 0.10 deleterious(0) probably_damaging(0.995) TCGA-28-2513-01 5 94288921 94288921 A G MCTP1 Splice_Site p.X327_splice 0.11 TCGA-28-2513-01 6 139251126 139251126 A - REPS1 Frame_Shift_Del p.Q416Rfs*19 0.13 TCGA-28-2513-01 6 26373202 26373202 G A BTN3A2 Missense_Mutation p.G265R 0.07 deleterious(0.02) probably_damaging(0.975) TCGA-28-2513-01 6 84234218 84234218 G A PRSS35 Missense_Mutation p.R353H 0.12 deleterious(0.03) probably_damaging(0.999) TCGA-28-2513-01 7 113519322 113519322 C T PPP1R3A Missense_Mutation p.A609T 0.12 tolerated(1) benign(0.001) TCGA-28-2513-01 7 142231857 142231857 A G TRBV10-1 Silent p.D20D 0.15 TCGA-28-2513-01 7 148769373 148769373 C T ZNF786 Missense_Mutation p.G164E 0.11 tolerated(1) benign(0.01) TCGA-28-2513-01 7 149427522 149427522 G A KRBA1 Silent p.R669R 0.50 TCGA-28-2513-01 7 66240254 66240254 A T KCTD7 Missense_Mutation p.S74C 0.11 deleterious(0.02) possibly_damaging(0.503) TCGA-28-2513-01 8 110497284 110497284 G A PKHD1L1 Silent p.E3196E 0.22 TCGA-28-2513-01 8 116426785 116426785 G T TRPS1 Missense_Mutation p.F1117L 0.18 tolerated_low_confidence(0.94) probably_damaging(0.99) TCGA-28-2513-01 8 121293282 121293282 G A COL14A1 Missense_Mutation p.V1270I 0.18 tolerated(0.31) benign(0.016) TCGA-28-2513-01 8 59512581 59512581 C T NSMAF Splice_Site p.X458_splice 0.13 TCGA-28-2513-01 X 118699184 118699184 C T CXorf56 Intron 0.10 TCGA-28-2513-01 X 134681139 134681139 G A DDX26B Missense_Mutation p.V231I 0.15 deleterious(0.02) benign(0.112) TCGA-28-2513-01 X 151908921 151908921 C A CSAG1 Missense_Mutation p.P54T 0.10 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-28-2513-01 X 153760436 153760436 T C G6PD Missense_Mutation p.E505G 0.10 tolerated(0.55) benign(0.007) TCGA-28-2513-01 X 24766501 24766501 G A POLA1 Missense_Mutation p.R916Q 0.11 deleterious(0.01) probably_damaging(0.938) TCGA-28-2513-01 X 30236767 30236767 G T MAGEB2 Missense_Mutation p.G24C 0.14 tolerated(0.07) probably_damaging(0.951) TCGA-28-2513-01 X 30260607 30260607 T A MAGEB4 Missense_Mutation p.F119I 0.12 deleterious(0) possibly_damaging(0.716) TCGA-28-2513-01 X 32404521 32404521 C T DMD Missense_Mutation p.R1527H 0.10 probably_damaging(0.928) TCGA-28-2513-01 X 38260580 38260580 G A OTC Missense_Mutation p.D147N 0.13 deleterious(0.01) possibly_damaging(0.465) TCGA-28-2513-01 X 51640084 51640084 T A MAGED1 Missense_Mutation p.S501T 0.09 deleterious_low_confidence(0.01) unknown(0) TCGA-28-2513-01 X 72667161 72667161 C T CDX4 Silent p.D24D 0.11 TCGA-28-2513-01 X 99662512 99662512 C T PCDH19 Missense_Mutation p.A362T 0.10 deleterious(0) possibly_damaging(0.902) TCGA-28-2514-01 10 129901938 129901947 CCTCTTTGTG T MKI67 In_Frame_Del p.S2719_K2721del 0.09 TCGA-28-2514-01 10 14938880 14938880 G T SUV39H2 Missense_Mutation p.W71C 0.10 deleterious(0) probably_damaging(0.999) TCGA-28-2514-01 11 119058000 119058000 A T PDZD3 Missense_Mutation p.S118C 0.30 deleterious(0.03) probably_damaging(0.944) TCGA-28-2514-01 11 1213370 1213370 G A MUC5AC RNA 0.04 TCGA-28-2514-01 11 85445443 85445443 C T SYTL2 Missense_Mutation p.R309K 0.44 tolerated(0.36) benign(0.012) TCGA-28-2514-01 12 57140741 57140741 T C PRIM1 Missense_Mutation p.T113A 0.39 deleterious(0.01) probably_damaging(0.933) TCGA-28-2514-01 12 68619487 68619487 G C IL26 Missense_Mutation p.S17C 0.37 tolerated(0.36) probably_damaging(0.964) TCGA-28-2514-01 13 103520596 103520596 C T BIVM-ERCC5 Silent p.L1315L 0.35 TCGA-28-2514-01 13 111896312 111896315 AAGT - ARHGEF7 Splice_Site p.X306_splice 0.34 TCGA-28-2514-01 13 24448985 24448985 C T MIPEP Silent p.K201K 0.32 TCGA-28-2514-01 14 101200827 101200827 C T DLK1 Missense_Mutation p.A249V 0.51 tolerated(0.28) benign(0) TCGA-28-2514-01 15 64481618 64481618 C T CSNK1G1 Intron 0.33 TCGA-28-2514-01 15 75693090 75693090 C T SIN3A Missense_Mutation p.R573Q 0.33 deleterious(0) probably_damaging(0.999) TCGA-28-2514-01 16 2156265 2156265 G A PKD1 Silent p.Y2510Y 0.50 TCGA-28-2514-01 16 3779062 3779062 C T CREBBP Missense_Mutation p.A1996T 0.70 unknown(0) TCGA-28-2514-01 16 4755095 4755095 C T ANKS3 Splice_Site p.X290_splice 0.05 TCGA-28-2514-01 16 57918280 57918280 C T CNGB1 Missense_Mutation p.D1182N 0.41 tolerated(0.1) benign(0.016) TCGA-28-2514-01 17 39116542 39116542 G A KRT39 Missense_Mutation p.S403L 0.10 tolerated(0.06) benign(0.002) TCGA-28-2514-01 18 55103358 55103358 C T ONECUT2 Missense_Mutation p.S137L 0.62 tolerated(0.28) benign(0.121) TCGA-28-2514-01 19 11221368 11221368 C T LDLR Silent p.H327H 0.29 TCGA-28-2514-01 19 1466495 1466496 - T APC2 Frame_Shift_Ins p.S1066Ffs*24 0.19 TCGA-28-2514-01 19 22575360 22575360 G A ZNF98 Missense_Mutation p.S226F 0.21 deleterious(0.02) possibly_damaging(0.876) TCGA-28-2514-01 19 3180036 3180036 G A S1PR4 3'UTR 0.36 TCGA-28-2514-01 19 3293345 3293345 C T CELF5 Silent p.S453S 0.30 TCGA-28-2514-01 19 35941517 35941517 C T FFAR2 Missense_Mutation p.R301C 0.30 tolerated(0.29) benign(0.003) TCGA-28-2514-01 19 55351111 55351111 C T KIR2DS4 Missense_Mutation p.T200M 0.29 tolerated_low_confidence(0.14) benign(0.368) TCGA-28-2514-01 19 55495082 55495082 C T NLRP2 Silent p.D672D 0.30 TCGA-28-2514-01 19 55693402 55693402 C T PTPRH Silent p.P1060P 0.28 TCGA-28-2514-01 19 6664993 6664993 G A TNFSF14 Missense_Mutation p.R223C 0.30 deleterious(0) possibly_damaging(0.901) TCGA-28-2514-01 19 6665273 6665273 G A TNFSF14 Silent p.H129H 0.27 TCGA-28-2514-01 19 7964176 7964176 C T LRRC8E Nonsense_Mutation p.R257* 0.33 TCGA-28-2514-01 1 114399229 114399229 G A PTPN22 Missense_Mutation p.R141C 0.44 deleterious(0) probably_damaging(1) TCGA-28-2514-01 1 119474410 119474410 C T TBX15 5'UTR 0.50 TCGA-28-2514-01 1 152648841 152648841 G A LCE2C 3'UTR 0.47 TCGA-28-2514-01 1 180257427 180257427 A G ACBD6 3'UTR 0.37 TCGA-28-2514-01 1 2411398 2411398 G A PLCH2 Missense_Mutation p.R139H 0.36 deleterious(0.03) probably_damaging(0.988) TCGA-28-2514-01 20 25666266 25666266 G A ZNF337 Missense_Mutation p.R63W 0.09 deleterious(0) possibly_damaging(0.689) TCGA-28-2514-01 20 47741010 47741010 C T STAU1 Missense_Mutation p.A242T 0.43 deleterious(0) probably_damaging(0.999) TCGA-28-2514-01 2 103095611 103095611 C T SLC9A4 Silent p.D190D 0.44 TCGA-28-2514-01 2 116447456 116447456 G A DPP10 Missense_Mutation p.V183I 0.38 tolerated(0.19) benign(0.012) TCGA-28-2514-01 2 169850255 169850255 G C ABCB11 Missense_Mutation p.P250R 0.43 deleterious(0) probably_damaging(1) TCGA-28-2514-01 2 62081178 62081178 G A FAM161A 5'UTR 0.47 TCGA-28-2514-01 2 71801344 71801344 C T DYSF Missense_Mutation p.A1082V 0.36 tolerated(0.3) benign(0.063) TCGA-28-2514-01 3 108549621 108549621 C T TRAT1 Nonsense_Mutation p.R38* 0.34 TCGA-28-2514-01 3 13670777 13670777 G A FBLN2 Missense_Mutation p.G943S 0.29 tolerated(0.46) benign(0.074) TCGA-28-2514-01 3 160083930 160083930 C T IFT80 Silent p.V150V 0.38 TCGA-28-2514-01 4 109667553 109667553 A G ETNPPL Splice_Site p.X435_splice 0.30 TCGA-28-2514-01 4 119948017 119948017 C T SYNPO2 Nonsense_Mutation p.Q165* 0.29 TCGA-28-2514-01 4 175898749 175898750 - TGT ADAM29 In_Frame_Ins p.C693dup 0.42 TCGA-28-2514-01 4 40440481 40440481 C T RBM47 Missense_Mutation p.V144M 0.23 deleterious(0) possibly_damaging(0.751) TCGA-28-2514-01 4 52869513 52869513 T C LRRC66 Missense_Mutation p.N181S 0.46 deleterious(0) probably_damaging(1) TCGA-28-2514-01 4 57194317 57194317 T C KIAA1211 3'UTR 0.20 TCGA-28-2514-01 4 70596318 70596318 G A SULT1B1 Missense_Mutation p.H227Y 0.52 deleterious(0.04) benign(0.279) TCGA-28-2514-01 4 71021774 71021774 C T C4orf40 Missense_Mutation p.R19W 0.47 deleterious(0.04) probably_damaging(0.942) TCGA-28-2514-01 4 74365901 74365901 A C AFM Missense_Mutation p.M535L 0.35 tolerated(1) benign(0.002) TCGA-28-2514-01 5 110818505 110818505 A C CAMK4 Missense_Mutation p.D284A 0.41 deleterious(0.01) probably_damaging(0.992) TCGA-28-2514-01 5 140553289 140553289 G T PCDHB7 Silent p.T291T 0.37 TCGA-28-2514-01 6 138559683 138559683 G A KIAA1244 Missense_Mutation p.R153H 0.32 deleterious(0.02) possibly_damaging(0.667) TCGA-28-2514-01 6 167360227 167360227 C T RNASET2 Nonsense_Mutation p.W68* 0.26 TCGA-28-2514-01 7 10973206 10973206 G A NDUFA4 3'UTR 0.42 TCGA-28-2514-01 7 126249517 126249517 C T GRM8 Missense_Mutation p.G465R 0.49 deleterious(0.02) probably_damaging(0.99) TCGA-28-2514-01 7 157367103 157367103 C T PTPRN2 Intron 0.42 TCGA-28-2514-01 7 48443394 48443394 C T ABCA13 Silent p.T3996T 0.11 TCGA-28-2514-01 7 71252646 71252646 G A CALN1 3'UTR 0.42 TCGA-28-2514-01 7 73601967 73601967 G T EIF4H Missense_Mutation p.G29V 0.26 deleterious(0.01) benign(0.422) TCGA-28-2514-01 7 99996939 99996939 C T PILRA Missense_Mutation p.P245S 0.18 tolerated(0.18) benign(0.017) TCGA-28-2514-01 8 117875483 117875483 G A RAD21 Missense_Mutation p.R54W 0.41 deleterious(0) probably_damaging(1) TCGA-28-2514-01 8 39782809 39782809 T A IDO1 Missense_Mutation p.F259I 0.09 deleterious(0) probably_damaging(0.95) TCGA-28-2514-01 9 112686091 112686091 C T PALM2-AKAP2 Silent p.L112L 0.45 TCGA-28-2514-01 9 133779413 133779413 G A FIBCD1 3'UTR 0.37 TCGA-28-2514-01 X 105280734 105280734 C T SERPINA7 Missense_Mutation p.V106I 0.85 tolerated(0.15) benign(0.001) TCGA-28-5204-01 10 61029825 61029825 C T FAM13C Missense_Mutation p.A213T 0.33 tolerated(0.29) benign(0.003) TCGA-28-5204-01 10 63957600 63957600 C G RTKN2 3'UTR 0.41 TCGA-28-5204-01 10 63957685 63957685 C G RTKN2 Missense_Mutation p.W604C 0.33 deleterious(0) probably_damaging(0.94) TCGA-28-5204-01 10 8007617 8007625 AGAAGGAGA - TAF3 In_Frame_Del p.K719_K721del 0.61 TCGA-28-5204-01 11 104912141 104912141 G A CARD16 Missense_Mutation p.H194Y 0.39 deleterious_low_confidence(0) benign(0.152) TCGA-28-5204-01 11 4976153 4976153 C T OR51A2 Missense_Mutation p.R264H 0.37 deleterious(0.03) benign(0.262) TCGA-28-5204-01 11 50003720 50003720 A G OR4C12 Silent p.G106G 0.38 TCGA-28-5204-01 12 46594890 46594890 T C SLC38A1 Missense_Mutation p.T332A 0.38 deleterious(0.02) probably_damaging(0.996) TCGA-28-5204-01 13 38266163 38266163 C T TRPC4 Missense_Mutation p.E403K 0.40 deleterious(0) probably_damaging(0.999) TCGA-28-5204-01 13 72053352 72053352 C A DACH1 Nonsense_Mutation p.E609* 0.38 TCGA-28-5204-01 15 89400787 89400787 A T ACAN Silent p.P1657P 0.42 TCGA-28-5204-01 16 89703308 89703308 G A DPEP1 Missense_Mutation p.E186K 0.75 tolerated(0.93) benign(0.002) TCGA-28-5204-01 17 42828248 42828248 G A DBF4B Missense_Mutation p.G492D 0.45 deleterious_low_confidence(0.01) benign(0.066) TCGA-28-5204-01 17 67264191 67264191 T A ABCA5 Missense_Mutation p.T1013S 0.47 tolerated(0.75) benign(0.217) TCGA-28-5204-01 17 76083173 76083173 C T TNRC6C Silent p.L1264L 0.48 TCGA-28-5204-01 19 11222312 11222312 G A LDLR Missense_Mutation p.V395M 0.38 deleterious(0) benign(0.242) TCGA-28-5204-01 19 2834236 2834236 C T ZNF554 Missense_Mutation p.R335W 0.45 deleterious(0.04) probably_damaging(0.991) TCGA-28-5204-01 19 43371196 43371196 C T PSG1 3'Flank 0.40 TCGA-28-5204-01 19 44803797 44803797 T C ZNF235 Missense_Mutation p.D35G 0.41 deleterious(0) benign(0.364) TCGA-28-5204-01 19 5223138 5223138 G A PTPRS Missense_Mutation p.R889C 0.70 deleterious(0.01) possibly_damaging(0.606) TCGA-28-5204-01 19 52272072 52272072 G A FPR2 Missense_Mutation p.R54Q 0.39 tolerated(0.11) possibly_damaging(0.477) TCGA-28-5204-01 19 59067682 59067682 C T UBE2M Splice_Site p.X137_splice 0.41 TCGA-28-5204-01 19 6531306 6531306 C T TNFSF9 Silent p.L87L 0.14 TCGA-28-5204-01 1 11721480 11721480 G A FBXO44 3'UTR 0.33 TCGA-28-5204-01 1 207224090 207224090 C T YOD1 Missense_Mutation p.E96K 0.41 tolerated(1) benign(0.001) TCGA-28-5204-01 1 234455909 234455909 G A SLC35F3 Missense_Mutation p.V405I 0.45 tolerated(0.26) probably_damaging(0.996) TCGA-28-5204-01 1 247654793 247654793 C T OR2W5 RNA 0.35 TCGA-28-5204-01 20 43927050 43927050 C T MATN4 Missense_Mutation p.E396K 0.48 probably_damaging(0.996) TCGA-28-5204-01 21 17199405 17199405 C T USP25 Missense_Mutation p.R526W 0.47 deleterious(0.01) possibly_damaging(0.815) TCGA-28-5204-01 22 29886478 29886478 C - NEFH Frame_Shift_Del p.A950Efs*106 0.32 TCGA-28-5204-01 22 38016358 38016366 AAAGAAGCA - GGA1 In_Frame_Del p.K140_Q142del 0.25 TCGA-28-5204-01 2 113532647 113532647 C T IL1A Silent p.A271A 0.37 TCGA-28-5204-01 2 116599984 116599984 T A DPP10 3'Flank 0.40 TCGA-28-5204-01 2 179448473 179448473 G A TTN Silent p.H21812H 0.44 TCGA-28-5204-01 3 111769547 111769547 A G TMPRSS7 Missense_Mutation p.I248V 0.40 tolerated(0.28) benign(0.023) TCGA-28-5204-01 3 170584263 170584263 T C RPL22L1 Missense_Mutation p.D92G 0.38 deleterious(0.02) probably_damaging(0.95) TCGA-28-5204-01 3 186390618 186390618 C T HRG Missense_Mutation p.R201W 0.41 deleterious(0) possibly_damaging(0.689) TCGA-28-5204-01 4 78665959 78665959 G A CNOT6L Silent p.C210C 0.06 TCGA-28-5204-01 5 140243006 140243006 C T AC005609.1 5'UTR 0.45 TCGA-28-5204-01 5 41382448 41382448 G A PLCXD3 Nonsense_Mutation p.R98* 0.46 TCGA-28-5204-01 5 64314153 64314153 A G CWC27 3'UTR 0.41 TCGA-28-5204-01 6 149342488 149342488 G A UST Missense_Mutation p.A270T 0.06 deleterious(0) probably_damaging(0.992) TCGA-28-5204-01 6 74079407 74079407 G A OOEP Missense_Mutation p.R37W 0.80 deleterious(0.04) probably_damaging(0.998) TCGA-28-5204-01 7 100684383 100684383 T C MUC17 Missense_Mutation p.V3229A 0.03 benign(0.413) TCGA-28-5204-01 7 148287896 148287896 G A C7orf33 5'UTR 0.25 TCGA-28-5204-01 7 71571179 71571179 G A CALN1 Silent p.S115S 0.21 TCGA-28-5204-01 7 80103615 80103615 G A GNAT3 Missense_Mutation p.T181M 0.23 deleterious(0) probably_damaging(0.996) TCGA-28-5204-01 7 98609721 98609721 C T TRRAP Missense_Mutation p.R3775W 0.19 probably_damaging(0.999) TCGA-28-5204-01 7 99521178 99521178 C G GJC3 Missense_Mutation p.R277T 0.25 tolerated_low_confidence(0.6) benign(0) TCGA-28-5204-01 8 39678526 39678526 C T ADAM2 Missense_Mutation p.V170I 0.73 tolerated(1) benign(0.001) TCGA-28-5204-01 9 105767590 105767590 A C CYLC2 Missense_Mutation p.K226T 0.76 tolerated(0.16) unknown(0) TCGA-28-5204-01 9 23765036 23765036 C T ELAVL2 Intron 0.37 TCGA-28-5204-01 9 23765068 23765068 C A ELAVL2 Intron 0.36 TCGA-28-5204-01 9 77249548 77249548 G T RORB Missense_Mutation p.G32V 0.36 deleterious(0) probably_damaging(1) TCGA-28-5204-01 X 107977902 107977902 G T IRS4 Nonsense_Mutation p.S558* 0.90 TCGA-28-5204-01 X 73961437 73961437 C T KIAA2022 Missense_Mutation p.M985I 0.84 tolerated(0.13) benign(0.002) TCGA-28-5207-01 11 122756720 122756720 A G C11orf63 Missense_Mutation p.M55V 0.36 deleterious(0.04) benign(0.003) TCGA-28-5207-01 11 74904384 74904384 G A SLCO2B1 Silent p.E399E 0.46 TCGA-28-5207-01 12 57033894 57033894 G A ATP5B Missense_Mutation p.S386L 0.14 deleterious_low_confidence(0) probably_damaging(0.989) TCGA-28-5207-01 13 101742235 101742235 C T NALCN Missense_Mutation p.V1118M 0.38 tolerated(0.08) benign(0.396) TCGA-28-5207-01 13 28877307 28877307 G C FLT1 Missense_Mutation p.I1338M 0.05 deleterious_low_confidence(0) benign(0.177) TCGA-28-5207-01 13 99947286 99947286 G A GPR183 3'UTR 0.32 TCGA-28-5207-01 14 19377947 19377947 C T OR11H12 Silent p.F118F 0.45 TCGA-28-5207-01 15 63970125 63970125 C T HERC1 Missense_Mutation p.R2330H 0.27 probably_damaging(0.998) TCGA-28-5207-01 16 67976842 67976842 C T LCAT Missense_Mutation p.A117T 0.36 tolerated(0.4) benign(0.067) TCGA-28-5207-01 17 39135111 39135111 G A KRT40 Missense_Mutation p.R381W 0.18 deleterious(0.04) possibly_damaging(0.88) TCGA-28-5207-01 17 39780673 39780673 C T KRT17 Missense_Mutation p.R30Q 0.43 tolerated(0.38) benign(0) TCGA-28-5207-01 17 45925367 45925367 G A SP6 Silent p.G143G 0.34 TCGA-28-5207-01 17 5037198 5037198 G A USP6 Missense_Mutation p.G134D 0.12 deleterious_low_confidence(0) probably_damaging(0.982) TCGA-28-5207-01 17 72926423 72926423 C T OTOP2 Silent p.A231A 0.36 TCGA-28-5207-01 17 74326154 74326154 A G PRPSAP1 Missense_Mutation p.I202T 0.29 deleterious(0.02) benign(0.249) TCGA-28-5207-01 17 7577141 7577141 C A TP53 Missense_Mutation p.G266V 0.37 deleterious(0) probably_damaging(0.999) TCGA-28-5207-01 18 335090 335090 C G COLEC12 Missense_Mutation p.A490P 0.31 tolerated(1) unknown(0) TCGA-28-5207-01 19 10394791 10394791 C T ICAM1 Silent p.D240D 0.33 TCGA-28-5207-01 19 11132404 11132404 C T SMARCA4 Missense_Mutation p.R874C 0.33 probably_damaging(0.99) TCGA-28-5207-01 19 17922705 17922705 T C B3GNT3 Missense_Mutation p.V298A 0.09 deleterious(0.05) possibly_damaging(0.87) TCGA-28-5207-01 19 17943330 17943330 G A JAK3 Missense_Mutation p.P893L 0.36 tolerated(0.24) benign(0.015) TCGA-28-5207-01 19 35449589 35449589 G A ZNF792 Silent p.G390G 0.26 TCGA-28-5207-01 19 40360855 40360855 C A FCGBP Splice_Site p.X5184_splice 0.33 TCGA-28-5207-01 19 51301380 51301380 C A C19orf48 Missense_Mutation p.R109I 0.41 tolerated_low_confidence(0.18) possibly_damaging(0.506) TCGA-28-5207-01 19 51960480 51960480 G C SIGLEC8 Missense_Mutation p.P247A 0.42 deleterious(0.01) possibly_damaging(0.505) TCGA-28-5207-01 1 120927058 120927058 T C FCGR1B 3'UTR 0.26 TCGA-28-5207-01 1 153029215 153029215 G T SPRR2A 5'UTR 0.36 TCGA-28-5207-01 1 173840057 173840057 C T ZBTB37 Missense_Mutation p.R232W 0.08 deleterious(0.02) benign(0.339) TCGA-28-5207-01 1 186099745 186099745 G A HMCN1 Silent p.Q4382Q 0.29 TCGA-28-5207-01 1 197062332 197062332 G C ASPM Silent p.V3048V 0.59 TCGA-28-5207-01 1 216465647 216465647 G C USH2A Missense_Mutation p.F570L 0.34 benign(0.023) TCGA-28-5207-01 1 248814129 248814129 G T OR2T27 Missense_Mutation p.S19R 0.09 tolerated(0.25) benign(0.004) TCGA-28-5207-01 1 39800817 39800817 C T MACF1 Intron 0.14 TCGA-28-5207-01 1 43917642 43917642 T C HYI Missense_Mutation p.T157A 0.36 deleterious(0.01) possibly_damaging(0.686) TCGA-28-5207-01 1 6589196 6589196 G T NOL9 Missense_Mutation p.H561Q 0.33 deleterious(0) probably_damaging(1) TCGA-28-5207-01 22 26117315 26117315 G A ADRBK2 Missense_Mutation p.C619Y 0.55 deleterious_low_confidence(0.03) probably_damaging(0.99) TCGA-28-5207-01 22 38883964 38883964 T C DDX17 Missense_Mutation p.K535R 0.10 tolerated(0.26) benign(0.012) TCGA-28-5207-01 2 102793083 102793083 C T IL1R1 Missense_Mutation p.S525F 0.35 deleterious(0) probably_damaging(0.988) TCGA-28-5207-01 2 1271233 1271233 G A SNTG2 Missense_Mutation p.V392M 0.09 tolerated(0.24) benign(0.012) TCGA-28-5207-01 2 136558294 136558294 G A LCT Silent p.N1583N 0.51 TCGA-28-5207-01 2 144381721 144381721 C T ARHGAP15 Silent p.D341D 0.31 TCGA-28-5207-01 2 37152302 37152302 T C STRN Missense_Mutation p.K95R 0.05 deleterious(0) possibly_damaging(0.846) TCGA-28-5207-01 2 46987001 46987001 G T SOCS5 Silent p.P444P 0.33 TCGA-28-5207-01 3 120957900 120957900 C T STXBP5L Missense_Mutation p.P423S 0.35 tolerated(1) probably_damaging(0.986) TCGA-28-5207-01 3 66432740 66432740 C A LRIG1 Missense_Mutation p.R858S 0.30 tolerated(0.3) benign(0.041) TCGA-28-5207-01 4 13603517 13603517 T G BOD1L1 Missense_Mutation p.R1669S 0.36 benign(0.09) TCGA-28-5207-01 4 36231152 36231152 A G ARAP2 5'UTR 0.31 TCGA-28-5207-01 4 79856373 79856373 A G PAQR3 Missense_Mutation p.F84L 0.30 tolerated(0.44) benign(0.009) TCGA-28-5207-01 5 112175591 112175591 A G APC Missense_Mutation p.S1434G 0.36 probably_damaging(0.989) TCGA-28-5207-01 5 140773167 140773167 A G PCDHGA8 Missense_Mutation p.T263A 0.06 deleterious_low_confidence(0.05) benign(0.064) TCGA-28-5207-01 5 141694230 141694230 G A SPRY4 Silent p.V171V 0.42 TCGA-28-5207-01 6 163984582 163984585 CAGA - QKI Frame_Shift_Del p.R256Kfs*18 0.53 TCGA-28-5207-01 6 31964058 31964058 C T C4A Silent p.A1154A 0.33 TCGA-28-5207-01 6 31975722 31975722 C T AL645922.1 5'Flank 0.53 TCGA-28-5207-01 6 32974898 32974898 G A HLA-DOA Silent p.T236T 0.40 TCGA-28-5207-01 6 46678392 46678392 G T PLA2G7 Silent p.R223R 0.36 TCGA-28-5207-01 7 123508443 123508443 G A HYAL4 Missense_Mutation p.R39Q 0.05 tolerated(0.67) benign(0.008) TCGA-28-5207-01 7 131859666 131859666 C T PLXNA4 Silent p.L1296L 0.32 TCGA-28-5207-01 7 136700324 136700324 G C CHRM2 Missense_Mutation p.G238R 0.22 tolerated(0.25) benign(0.392) TCGA-28-5207-01 7 55221821 55221821 G A EGFR Missense_Mutation p.A289T 0.43 deleterious(0) probably_damaging(0.981) TCGA-28-5207-01 8 144690265 144690265 A G PYCRL Silent p.S53S 0.14 TCGA-28-5207-01 9 13107002 13107002 G A MPDZ Missense_Mutation p.R2030W 0.28 deleterious(0) probably_damaging(0.991) TCGA-28-5207-01 9 88967843 88967843 T C ZCCHC6 Missense_Mutation p.N91S 0.40 tolerated_low_confidence(0.15) benign(0.063) TCGA-28-5207-01 X 75649443 75649443 G C MAGEE1 Missense_Mutation p.D374H 0.09 deleterious_low_confidence(0) benign(0.094) TCGA-28-5207-01 X 96139742 96139742 A G RPA4 Missense_Mutation p.I145V 0.75 tolerated(0.1) benign(0.118) TCGA-28-5208-01 11 120983846 120983846 C T TECTA Silent p.Y184Y 0.45 TCGA-28-5208-01 11 123811110 123811110 C T OR4D5 Missense_Mutation p.R263W 0.38 deleterious(0.01) benign(0.008) TCGA-28-5208-01 11 197577 197577 G A ODF3 Silent p.T42T 0.30 TCGA-28-5208-01 11 35684626 35684626 G A TRIM44 5'UTR 0.33 TCGA-28-5208-01 11 55606713 55606713 G A OR5D16 Silent p.A162A 0.36 TCGA-28-5208-01 11 55890211 55890211 T G OR8H3 Missense_Mutation p.D121E 0.40 deleterious(0) probably_damaging(0.982) TCGA-28-5208-01 11 59630133 59630133 C T TCN1 Missense_Mutation p.A108T 0.37 tolerated(0.15) benign(0.001) TCGA-28-5208-01 11 62284308 62284308 G A AHNAK Nonsense_Mutation p.R5861* 0.39 TCGA-28-5208-01 11 6423823 6423823 A G APBB1 Missense_Mutation p.S413P 0.44 tolerated(0.19) benign(0) TCGA-28-5208-01 11 77727605 77727605 C T KCTD14 3'UTR 0.48 TCGA-28-5208-01 12 117723944 117723944 G A NOS1 Missense_Mutation p.R419C 0.36 deleterious(0) probably_damaging(0.993) TCGA-28-5208-01 12 7047759 7047759 C T ATN1 Missense_Mutation p.P878L 0.44 probably_damaging(0.998) TCGA-28-5208-01 14 81610025 81610025 C T TSHR Silent p.I541I 0.42 TCGA-28-5208-01 14 94404157 94404157 G A ASB2 Missense_Mutation p.A553V 0.44 deleterious(0.03) possibly_damaging(0.754) TCGA-28-5208-01 15 42058284 42058284 C T MGA Silent p.G2668G 0.37 TCGA-28-5208-01 15 44849840 44849840 G A EIF3J Missense_Mutation p.C188Y 0.40 deleterious(0) probably_damaging(0.998) TCGA-28-5208-01 16 84224799 84224799 G A ADAD2 5'UTR 0.38 TCGA-28-5208-01 16 89649923 89649923 C T CPNE7 Missense_Mutation p.T190M 0.67 tolerated(0.15) benign(0.01) TCGA-28-5208-01 16 9943716 9943716 C T GRIN2A Missense_Mutation p.V409I 0.37 deleterious(0.01) probably_damaging(0.984) TCGA-28-5208-01 17 21911084 21911084 C T RP11-744K17.9 RNA 0.20 TCGA-28-5208-01 17 29533378 29533378 C T NF1 Nonsense_Mutation p.R461* 0.38 TCGA-28-5208-01 17 29552132 29552132 G T NF1 Missense_Mutation p.C622F 0.40 deleterious_low_confidence(0.05) benign(0.003) TCGA-28-5208-01 17 32956104 32956104 C T TMEM132E Missense_Mutation p.R317W 0.43 deleterious(0) probably_damaging(0.982) TCGA-28-5208-01 17 43333267 43333267 G A SPATA32 Silent p.N94N 0.42 TCGA-28-5208-01 17 62893283 62893283 C G LRRC37A3 Missense_Mutation p.W31C 0.17 tolerated(0.1) benign(0.001) TCGA-28-5208-01 18 56587257 56587257 G A ZNF532 Missense_Mutation p.V580M 0.42 deleterious(0) probably_damaging(0.999) TCGA-28-5208-01 18 74680222 74680222 G T ZNF236 Missense_Mutation p.S1822I 0.41 deleterious(0.01) benign(0.032) TCGA-28-5208-01 19 19675769 19675769 C T PBX4 Missense_Mutation p.A300T 0.26 tolerated(0.34) benign(0.005) TCGA-28-5208-01 19 2737012 2737012 C T SLC39A3 Intron 0.20 TCGA-28-5208-01 19 35249772 35249772 A G ZNF599 3'UTR 0.35 TCGA-28-5208-01 19 45153152 45153152 G A PVR Missense_Mutation p.V167I 0.05 tolerated(0.37) benign(0.133) TCGA-28-5208-01 19 53994271 53994271 G A ZNF813 Missense_Mutation p.R262H 0.24 tolerated(0.33) benign(0.031) TCGA-28-5208-01 19 8808430 8808430 C T ACTL9 Missense_Mutation p.V208I 0.37 tolerated(0.41) probably_damaging(0.995) TCGA-28-5208-01 1 151271347 151271347 C T PI4KB Missense_Mutation p.R663H 0.43 deleterious(0) possibly_damaging(0.68) TCGA-28-5208-01 1 152188049 152188049 T G HRNR Missense_Mutation p.H2019P 0.11 unknown(0) TCGA-28-5208-01 1 152484251 152484251 C T LCE5A Nonsense_Mutation p.R81* 0.43 TCGA-28-5208-01 1 160851913 160851913 G T ITLN1 Missense_Mutation p.T80N 0.39 deleterious(0) probably_damaging(1) TCGA-28-5208-01 1 179354443 179354443 G A AXDND1 Missense_Mutation p.R271Q 0.32 deleterious(0.02) possibly_damaging(0.857) TCGA-28-5208-01 1 228112065 228112065 G A WNT9A Missense_Mutation p.S130L 0.46 deleterious(0) probably_damaging(0.999) TCGA-28-5208-01 1 247587155 247587155 G A NLRP3 Missense_Mutation p.R137H 0.46 tolerated(0.14) benign(0.115) TCGA-28-5208-01 1 55457654 55457654 G A TMEM61 Missense_Mutation p.A171T 0.42 tolerated(0.35) benign(0.037) TCGA-28-5208-01 20 44587938 44587938 G A ZNF335 Missense_Mutation p.R719C 0.36 deleterious(0) probably_damaging(0.999) TCGA-28-5208-01 20 62571758 62571758 C T UCKL1 Silent p.A461A 0.25 TCGA-28-5208-01 22 20819524 20819524 G A KLHL22 Missense_Mutation p.R245W 0.07 deleterious(0) probably_damaging(0.998) TCGA-28-5208-01 22 32586994 32586994 C T RFPL2 Missense_Mutation p.R301H 0.05 tolerated(0.11) benign(0.001) TCGA-28-5208-01 2 1168837 1168837 G A SNTG2 Missense_Mutation p.G187S 0.39 tolerated(0.11) possibly_damaging(0.748) TCGA-28-5208-01 2 233274393 233274393 C T ALPPL2 Silent p.G470G 0.47 TCGA-28-5208-01 2 44051252 44051252 A G ABCG5 Missense_Mutation p.V375A 0.46 tolerated(0.15) possibly_damaging(0.507) TCGA-28-5208-01 2 48692078 48692078 T G PPP1R21 Missense_Mutation p.Y233D 0.36 tolerated(0.2) benign(0.04) TCGA-28-5208-01 2 68729870 68729870 C G APLF Missense_Mutation p.T59R 0.45 tolerated(0.05) benign(0.02) TCGA-28-5208-01 3 101136587 101136587 C T SENP7 Missense_Mutation p.R111Q 0.45 deleterious(0.01) probably_damaging(0.999) TCGA-28-5208-01 3 47098909 47098909 C T SETD2 Missense_Mutation p.R2122Q 0.39 deleterious(0) probably_damaging(0.994) TCGA-28-5208-01 3 52014464 52014464 G A ABHD14A Silent p.A151A 0.45 TCGA-28-5208-01 3 55107854 55107854 C T CACNA2D3 Missense_Mutation p.R1051C 0.37 deleterious(0) possibly_damaging(0.732) TCGA-28-5208-01 4 77817817 77817817 C T SOWAHB Missense_Mutation p.D396N 0.41 tolerated(0.07) possibly_damaging(0.539) TCGA-28-5208-01 4 90857233 90857233 A C MMRN1 Missense_Mutation p.Q801P 0.41 tolerated(0.05) possibly_damaging(0.719) TCGA-28-5208-01 5 140167729 140167729 G A PCDHA1 Silent p.A618A 0.51 TCGA-28-5208-01 5 140537390 140537390 G A PCDHB17 3'UTR 0.31 TCGA-28-5208-01 5 140736435 140736435 C T PCDHGA4 Silent p.N556N 0.44 TCGA-28-5208-01 6 163899821 163899821 G - QKI Frame_Shift_Del p.V99Lfs*31 0.23 TCGA-28-5208-01 6 32172007 32172007 C T NOTCH4 Missense_Mutation p.E1009K 0.41 deleterious(0) probably_damaging(0.994) TCGA-28-5208-01 7 34192895 34192895 C T BMPER 3'UTR 0.18 TCGA-28-5208-01 7 36459856 36459856 A G ANLN Missense_Mutation p.R650G 0.51 deleterious(0) probably_damaging(0.983) TCGA-28-5208-01 7 81799924 81799924 C T CACNA2D1 Missense_Mutation p.R99H 0.09 tolerated(0.07) benign(0.006) TCGA-28-5208-01 7 82784341 82784341 G T PCLO Missense_Mutation p.P539H 0.41 possibly_damaging(0.878) TCGA-28-5208-01 7 92763758 92763758 A C SAMD9L Nonsense_Mutation p.Y509* 0.40 TCGA-28-5208-01 9 136629161 136629161 G A VAV2 3'UTR 0.39 TCGA-28-5208-01 9 32784670 32784670 C T TMEM215 Silent p.D163D 0.81 TCGA-28-5208-01 9 6328761 6328761 C T TPD52L3 Missense_Mutation p.R56C 0.65 deleterious(0.04) benign(0.019) TCGA-28-5208-01 9 77423011 77423011 C T TRPM6 Missense_Mutation p.R526H 0.35 deleterious(0.01) possibly_damaging(0.902) TCGA-28-5208-01 9 95792189 95792189 C T FGD3 Missense_Mutation p.R531C 0.46 deleterious(0) probably_damaging(1) TCGA-28-5208-01 X 109922646 109922646 G A CHRDL1 Silent p.L388L 0.80 TCGA-28-5208-01 X 12906487 12906487 G A TLR7 Missense_Mutation p.V954M 0.86 deleterious(0.02) possibly_damaging(0.868) TCGA-28-5208-01 X 148039907 148039907 G A AFF2 Missense_Mutation p.R870H 0.85 tolerated(0.08) probably_damaging(0.998) TCGA-28-5208-01 X 153130576 153130576 C T L1CAM Missense_Mutation p.V947M 0.85 deleterious(0.03) probably_damaging(0.913) TCGA-28-5208-01 X 153171843 153171843 G A AVPR2 Missense_Mutation p.A295T 0.08 deleterious(0.02) possibly_damaging(0.662) TCGA-28-5209-01 10 103190197 103190197 C T BTRC Silent p.L48L 0.75 TCGA-28-5209-01 10 28228843 28228843 C T ARMC4 Missense_Mutation p.A694T 0.92 deleterious(0) probably_damaging(0.998) TCGA-28-5209-01 10 89717695 89717696 - T PTEN Frame_Shift_Ins p.E242* 0.51 TCGA-28-5209-01 10 99426254 99426254 G T PI4K2A Missense_Mutation p.D352Y 0.88 deleterious(0) possibly_damaging(0.903) TCGA-28-5209-01 11 102573550 102573550 G A MMP27 Missense_Mutation p.P185S 0.47 deleterious(0) probably_damaging(1) TCGA-28-5209-01 11 117342628 117342628 C T DSCAML1 Missense_Mutation p.R1030H 0.46 deleterious(0.02) possibly_damaging(0.796) TCGA-28-5209-01 11 14498486 14498486 C A COPB1 Missense_Mutation p.E478D 0.46 tolerated(0.21) benign(0.374) TCGA-28-5209-01 11 30033178 30033178 A T KCNA4 Missense_Mutation p.L350M 0.50 tolerated(0.17) benign(0.11) TCGA-28-5209-01 11 46900805 46900805 T C LRP4 Missense_Mutation p.Y959C 0.48 deleterious(0) probably_damaging(0.969) TCGA-28-5209-01 11 5625849 5625849 C A TRIM6 Missense_Mutation p.T198K 0.46 deleterious(0.01) benign(0.322) TCGA-28-5209-01 11 60531221 60531221 C T MS4A15 Silent p.P5P 0.45 TCGA-28-5209-01 12 107371336 107371336 C T MTERFD3 Silent p.%3D 0.40 TCGA-28-5209-01 12 108603986 108603986 G A WSCD2 Missense_Mutation p.D196N 0.47 tolerated(1) benign(0.004) TCGA-28-5209-01 12 21991021 21991021 C T ABCC9 Missense_Mutation p.R1186Q 0.41 deleterious(0) probably_damaging(1) TCGA-28-5209-01 12 49164592 49164592 C T ADCY6 Silent p.K1071K 0.80 TCGA-28-5209-01 12 49399369 49399369 G A PRKAG1 Intron 0.39 TCGA-28-5209-01 12 73046818 73046818 T A TRHDE Missense_Mutation p.S911T 0.43 deleterious(0.03) benign(0.286) TCGA-28-5209-01 12 7869602 7869602 G A DPPA3 Missense_Mutation p.V137M 0.40 deleterious(0.03) benign(0.291) TCGA-28-5209-01 12 8689778 8689778 G A CLEC4E Missense_Mutation p.A102V 0.43 tolerated(0.21) benign(0.004) TCGA-28-5209-01 13 19752451 19752451 C T TUBA3C Missense_Mutation p.A104T 0.44 deleterious_low_confidence(0.01) possibly_damaging(0.516) TCGA-28-5209-01 13 24519982 24519982 G A ANKRD20A19P RNA 0.31 TCGA-28-5209-01 13 28636176 28636176 C T FLT3 Missense_Mutation p.A66T 0.41 tolerated(0.41) benign(0.001) TCGA-28-5209-01 13 48571116 48571116 C T SUCLA2 Missense_Mutation p.V45I 0.43 tolerated(0.27) benign(0.001) TCGA-28-5209-01 13 73636601 73636601 G A KLF5 Missense_Mutation p.M288I 0.48 tolerated(0.45) benign(0.38) TCGA-28-5209-01 14 104641730 104641730 G A KIF26A Missense_Mutation p.A869T 0.43 tolerated(0.27) probably_damaging(0.996) TCGA-28-5209-01 14 29237185 29237185 T G FOXG1 Missense_Mutation p.S234A 0.41 deleterious(0) probably_damaging(0.999) TCGA-28-5209-01 15 44858195 44858195 G A SPG11 Nonsense_Mutation p.R2286* 0.41 TCGA-28-5209-01 16 20492203 20492203 A T ACSM2A Missense_Mutation p.E490V 0.39 deleterious(0) possibly_damaging(0.739) TCGA-28-5209-01 16 21128600 21128600 C T DNAH3 Missense_Mutation p.A580T 0.05 tolerated(0.68) benign(0.001) TCGA-28-5209-01 16 23768582 23768582 C T CHP2 Missense_Mutation p.R159C 0.43 deleterious(0) probably_damaging(0.979) TCGA-28-5209-01 16 33020714 33020714 G C IGHV3OR16-8 Missense_Mutation p.C41S 0.43 deleterious_low_confidence(0) probably_damaging(0.928) TCGA-28-5209-01 16 58709937 58709937 C T SLC38A7 Missense_Mutation p.V264I 0.43 tolerated(1) benign(0.013) TCGA-28-5209-01 17 27778581 27778593 CAGAGCAGGCAGC - TAOK1 Frame_Shift_Del p.R6* 0.47 TCGA-28-5209-01 17 33768965 33768965 C T SLFN13 Silent p.K513K 0.27 TCGA-28-5209-01 17 3840720 3840720 C T ATP2A3 Missense_Mutation p.E771K 0.29 deleterious(0) probably_damaging(1) TCGA-28-5209-01 17 8092644 8092644 C A C17orf59 Missense_Mutation p.G272V 0.46 deleterious(0.02) probably_damaging(0.99) TCGA-28-5209-01 17 8092645 8092645 C A C17orf59 Nonsense_Mutation p.G272* 0.44 TCGA-28-5209-01 18 12351333 12351333 C T AFG3L2 Silent p.P466P 0.34 TCGA-28-5209-01 18 6965403 6965403 C A LAMA1 Missense_Mutation p.R2360L 0.47 deleterious(0.02) benign(0.009) TCGA-28-5209-01 19 10394191 10394191 C T ICAM1 Silent p.P122P 0.32 TCGA-28-5209-01 19 12759205 12759205 C G MAN2B1 Missense_Mutation p.R816S 0.33 deleterious(0) probably_damaging(0.995) TCGA-28-5209-01 19 14865775 14865775 G A EMR2 Silent p.Y527Y 0.32 TCGA-28-5209-01 19 22575722 22575722 T C ZNF98 Silent p.Q105Q 0.23 TCGA-28-5209-01 19 33585093 33585093 C T GPATCH1 Silent p.F157F 0.34 TCGA-28-5209-01 19 36336653 36336653 G A NPHS1 Missense_Mutation p.P559S 0.26 tolerated(0.25) benign(0.101) TCGA-28-5209-01 19 39913516 39913516 G A PLEKHG2 Missense_Mutation p.G608R 0.35 tolerated_low_confidence(0.07) benign(0.319) TCGA-28-5209-01 19 43383788 43383788 C G PSG1 5'UTR 0.28 TCGA-28-5209-01 19 47823297 47823297 C T C5AR1 Missense_Mutation p.A88V 0.27 tolerated(0.08) possibly_damaging(0.849) TCGA-28-5209-01 19 51205832 51205832 G A SHANK1 Missense_Mutation p.R547W 0.27 possibly_damaging(0.876) TCGA-28-5209-01 19 51729289 51729289 G A CD33 Missense_Mutation p.A217T 0.29 deleterious(0) benign(0.035) TCGA-28-5209-01 19 57326473 57326473 C T PEG3 Missense_Mutation p.G1113S 0.25 tolerated(0.05) probably_damaging(1) TCGA-28-5209-01 19 57839653 57839653 C T ZNF543 Missense_Mutation p.R275W 0.28 deleterious(0) probably_damaging(0.999) TCGA-28-5209-01 19 7585507 7585507 G A ZNF358 Missense_Mutation p.R460H 0.19 tolerated_low_confidence(0.14) benign(0.132) TCGA-28-5209-01 1 118574428 118574428 C A SPAG17 Missense_Mutation p.V1166F 0.39 deleterious(0) possibly_damaging(0.603) TCGA-28-5209-01 1 152275131 152275131 G C FLG 3'UTR 0.06 TCGA-28-5209-01 1 159272655 159272655 G A FCER1A Missense_Mutation p.V23M 0.44 tolerated(1) benign(0.002) TCGA-28-5209-01 1 186863266 186863266 A T PLA2G4A Missense_Mutation p.T101S 0.40 tolerated(0.32) benign(0.017) TCGA-28-5209-01 1 53559217 53559217 C T SLC1A7 Missense_Mutation p.R238H 0.09 deleterious(0.02) probably_damaging(0.953) TCGA-28-5209-01 1 86838137 86838137 T A ODF2L Missense_Mutation p.E299D 0.29 deleterious(0.01) probably_damaging(0.999) TCGA-28-5209-01 20 17434533 17434533 C T PCSK2 Silent p.D344D 0.42 TCGA-28-5209-01 20 5283318 5283318 C T PROKR2 Missense_Mutation p.A175T 0.34 tolerated(0.39) benign(0.013) TCGA-28-5209-01 20 5294853 5294853 C T PROKR2 Missense_Mutation p.V55I 0.40 tolerated(0.59) benign(0.001) TCGA-28-5209-01 21 10951332 10951332 C T TPTE Missense_Mutation p.R127H 0.16 tolerated(0.28) benign(0.072) TCGA-28-5209-01 21 46320316 46320316 G A ITGB2 Silent p.D272D 0.41 TCGA-28-5209-01 22 22868784 22868784 C T ZNF280A Missense_Mutation p.E391K 0.37 deleterious(0.02) possibly_damaging(0.84) TCGA-28-5209-01 2 116599960 116599960 C G DPP10 3'Flank 0.32 TCGA-28-5209-01 2 179631234 179631234 G A TTN Nonsense_Mutation p.R3193* 0.41 TCGA-28-5209-01 3 12616291 12616291 A G MKRN2 Missense_Mutation p.I215V 0.46 tolerated(1) benign(0) TCGA-28-5209-01 3 132360955 132360955 G C ACAD11 Missense_Mutation p.T133R 0.36 tolerated(0.23) benign(0.012) TCGA-28-5209-01 3 196229875 196229876 CG - RNF168 Frame_Shift_Del p.R57Gfs*34 0.25 TCGA-28-5209-01 3 49940348 49940348 A T MST1R Missense_Mutation p.F232Y 0.45 deleterious(0) probably_damaging(0.962) TCGA-28-5209-01 3 53837549 53837549 T G CACNA1D Nonsense_Mutation p.Y1865* 0.48 TCGA-28-5209-01 4 123317517 123317517 T C ADAD1 Missense_Mutation p.F237L 0.38 deleterious(0.02) benign(0.102) TCGA-28-5209-01 4 7042865 7042865 C T CCDC96 3'UTR 0.39 TCGA-28-5209-01 4 89053763 89053763 G A ABCG2 Silent p.N76N 0.45 TCGA-28-5209-01 4 96762205 96762205 C T PDHA2 Nonsense_Mutation p.R302* 0.40 TCGA-28-5209-01 5 131729923 131729923 G T SLC22A5 Missense_Mutation p.G545C 0.42 deleterious(0.03) benign(0.246) TCGA-28-5209-01 5 140751480 140751480 G A PCDHGB3 Missense_Mutation p.V507M 0.46 deleterious(0.03) possibly_damaging(0.851) TCGA-28-5209-01 5 178408768 178408768 C T GRM6 Missense_Mutation p.V842I 0.51 tolerated(1) benign(0.006) TCGA-28-5209-01 5 80382758 80382758 C T RASGRF2 Missense_Mutation p.T459M 0.40 deleterious(0.03) probably_damaging(0.983) TCGA-28-5209-01 6 158483053 158483053 C T SYNJ2 Silent p.G328G 0.85 TCGA-28-5209-01 6 32974588 32974588 C T HLA-DOA 3'UTR 0.36 TCGA-28-5209-01 6 40359728 40359728 C T LRFN2 Missense_Mutation p.R775Q 0.49 tolerated(0.06) benign(0.041) TCGA-28-5209-01 6 49928132 49928132 C T DEFB114 Missense_Mutation p.R28H 0.34 deleterious_low_confidence(0.01) benign(0.072) TCGA-28-5209-01 7 101926060 101926060 C T SH2B2 5'Flank 0.14 TCGA-28-5209-01 7 138305873 138305873 G A SVOPL Missense_Mutation p.P424L 0.26 deleterious(0) probably_damaging(0.969) TCGA-28-5209-01 7 2953020 2953020 G A CARD11 Missense_Mutation p.R974C 0.32 deleterious(0.01) possibly_damaging(0.901) TCGA-28-5209-01 7 31682505 31682505 G A CCDC129 Silent p.L533L 0.30 TCGA-28-5209-01 7 44146386 44146386 G A AEBP1 Silent p.P165P 0.37 TCGA-28-5209-01 7 55233043 55233043 G C EGFR Missense_Mutation p.G598A 0.12 deleterious(0.01) benign(0.278) TCGA-28-5209-01 7 55268064 55268064 C T EGFR Silent p.F968F 0.77 TCGA-28-5209-01 7 55268067 55268067 C G EGFR Silent p.S969S 0.76 TCGA-28-5209-01 7 71252855 71252855 C T CALN1 Missense_Mutation p.V231I 0.35 deleterious(0) probably_damaging(0.981) TCGA-28-5209-01 7 83032082 83032082 G A SEMA3E Nonsense_Mutation p.R337* 0.26 TCGA-28-5209-01 7 87074204 87074204 A G ABCB4 Missense_Mutation p.Y365H 0.26 tolerated(0.13) benign(0.013) TCGA-28-5209-01 7 94054949 94054949 G T COL1A2 Missense_Mutation p.G937C 0.27 unknown(0) TCGA-28-5209-01 7 98449223 98449223 C T TMEM130 Missense_Mutation p.R276H 0.25 tolerated(0.14) probably_damaging(0.924) TCGA-28-5209-01 8 144940353 144940353 C T EPPK1 Missense_Mutation p.V2357M 0.07 possibly_damaging(0.739) TCGA-28-5209-01 X 105156744 105156744 T G NRK Missense_Mutation p.I783M 0.50 deleterious(0) benign(0.136) TCGA-28-5209-01 X 117748723 117748723 C - DOCK11 Frame_Shift_Del p.D1058Ifs*25 0.71 TCGA-28-5209-01 X 149898608 149898608 A G MTMR1 Missense_Mutation p.K187E 0.46 deleterious(0) benign(0.032) TCGA-28-5209-01 X 153032873 153032873 G A PLXNB3 Silent p.S220S 0.27 TCGA-28-5209-01 X 30268850 30268850 C T MAGEB1 Silent p.D80D 0.08 TCGA-28-5209-01 X 47272323 47272323 G A ZNF157 Missense_Mutation p.R284H 0.43 tolerated(0.53) possibly_damaging(0.751) TCGA-28-5209-01 X 48564987 48564987 C T SUV39H1 Silent p.G358G 0.46 TCGA-28-5209-01 X 64722205 64722205 C A ZC3H12B Missense_Mutation p.H543N 0.48 tolerated(0.31) benign(0.027) TCGA-28-5209-01 X 72092297 72092297 G A DMRTC1 Missense_Mutation p.L190F 0.21 tolerated(0.23) benign(0.276) TCGA-28-5209-01 X 78427065 78427065 C A GPR174 Silent p.T187T 0.46 TCGA-28-5209-01 X 79960260 79960260 G A BRWD3 Missense_Mutation p.R880C 0.32 deleterious(0) possibly_damaging(0.776) TCGA-28-5211-01 10 22615480 22615480 T G BMI1 Missense_Mutation p.C34W 0.36 deleterious(0) probably_damaging(1) TCGA-28-5211-01 11 125853903 125853903 C - CDON Frame_Shift_Del p.P954Lfs*14 0.27 TCGA-28-5211-01 11 125893407 125893407 C A CDON 5'UTR 0.09 TCGA-28-5211-01 11 64358979 64358979 G A SLC22A12 5'UTR 0.13 TCGA-28-5211-01 12 57603612 57603612 T C LRP1 Missense_Mutation p.S4134P 0.15 possibly_damaging(0.513) TCGA-28-5211-01 12 91498030 91498030 C T LUM Missense_Mutation p.R310H 0.22 deleterious(0) probably_damaging(0.999) TCGA-28-5211-01 14 101491941 101491941 C T MIR1197 RNA 0.28 TCGA-28-5211-01 14 64497733 64497733 G A SYNE2 Splice_Site p.X2294_splice 0.26 TCGA-28-5211-01 15 35045227 35045227 G A GJD2 Nonsense_Mutation p.R140* 0.24 TCGA-28-5211-01 15 43258462 43258462 C A UBR1 Missense_Mutation p.G1494C 0.11 deleterious(0) possibly_damaging(0.84) TCGA-28-5211-01 15 84651232 84651232 G A ADAMTSL3 Missense_Mutation p.R951H 0.23 tolerated(0.41) benign(0.006) TCGA-28-5211-01 15 94943189 94943189 C T MCTP2 Missense_Mutation p.R644C 0.18 deleterious(0.01) benign(0.014) TCGA-28-5211-01 16 16272807 16272807 C T ABCC6 Missense_Mutation p.G755R 0.33 deleterious(0) probably_damaging(0.999) TCGA-28-5211-01 17 2966788 2966788 C T OR1D5 Silent p.T38T 0.17 TCGA-28-5211-01 17 77073856 77073856 A G ENGASE Missense_Mutation p.E109G 0.16 tolerated(0.36) benign(0.005) TCGA-28-5211-01 17 8784044 8784044 G A PIK3R5 Missense_Mutation p.T852M 0.26 tolerated(0.11) benign(0.404) TCGA-28-5211-01 17 9792806 9792806 G A GLP2R Silent p.S482S 0.25 TCGA-28-5211-01 19 15067457 15067457 C T SLC1A6 Missense_Mutation p.V334I 0.21 tolerated(0.52) benign(0.027) TCGA-28-5211-01 19 55556401 55556401 G C RDH13 3'UTR 0.30 TCGA-28-5211-01 19 55593832 55593832 C A EPS8L1 Missense_Mutation p.T359K 0.08 deleterious(0) benign(0.349) TCGA-28-5211-01 19 55698964 55698964 G A PTPRH Missense_Mutation p.S828F 0.11 benign(0.206) TCGA-28-5211-01 1 113252867 113252867 C T PPM1J Missense_Mutation p.R479H 0.17 deleterious(0.01) probably_damaging(0.964) TCGA-28-5211-01 1 152082812 152082812 G A TCHH Missense_Mutation p.R961W 0.16 unknown(0) TCGA-28-5211-01 1 247752222 247752222 C A OR2G2 Silent p.L187L 0.18 TCGA-28-5211-01 1 94466600 94466600 C T ABCA4 Missense_Mutation p.S2115N 0.20 deleterious(0.02) benign(0.021) TCGA-28-5211-01 20 34257457 34257457 T G NFS1 3'UTR 0.21 TCGA-28-5211-01 20 44259731 44259731 C G WFDC10A 3'UTR 0.21 TCGA-28-5211-01 2 152363440 152363440 G T NEB Missense_Mutation p.Q7847K 0.24 possibly_damaging(0.725) TCGA-28-5211-01 2 175612750 175612750 C T CHRNA1 3'UTR 0.31 TCGA-28-5211-01 2 238275426 238275426 C T COL6A3 Missense_Mutation p.V1802I 0.12 benign(0.259) TCGA-28-5211-01 2 75720533 75720533 G A EVA1A Silent p.S96S 0.20 TCGA-28-5211-01 3 49869443 49869443 C A TRAIP Missense_Mutation p.D315Y 0.22 deleterious(0) probably_damaging(0.954) TCGA-28-5211-01 3 55052295 55052295 C T CACNA2D3 Missense_Mutation p.R980C 0.09 deleterious(0.05) possibly_damaging(0.534) TCGA-28-5211-01 4 122085228 122085228 G A TNIP3 Missense_Mutation p.T95M 0.11 tolerated(0.13) benign(0.031) TCGA-28-5211-01 4 38830190 38830190 G A TLR6 Missense_Mutation p.T302M 0.28 deleterious(0) probably_damaging(0.943) TCGA-28-5211-01 5 45695952 45695952 C T HCN1 Missense_Mutation p.E82K 0.26 tolerated_low_confidence(0.29) benign(0.027) TCGA-28-5211-01 5 50689484 50689484 G T ISL1 3'UTR 0.17 TCGA-28-5211-01 6 129802525 129802525 C G LAMA2 Missense_Mutation p.L2564V 0.23 deleterious(0.04) probably_damaging(0.98) TCGA-28-5211-01 6 152861113 152861113 G C SYNE1 Missense_Mutation p.I37M 0.17 benign(0.251) TCGA-28-5211-01 6 31599728 31599728 A G PRRC2A Missense_Mutation p.E1093G 0.27 unknown(0) TCGA-28-5211-01 6 39159114 39159114 C T KCNK5 Missense_Mutation p.R351Q 0.08 tolerated(0.12) benign(0.007) TCGA-28-5211-01 6 90394612 90394612 G T MDN1 Missense_Mutation p.L3938I 0.09 benign(0.004) TCGA-28-5211-01 7 11151091 11151091 C A PHF14 Silent p.S638S 0.12 TCGA-28-5211-01 7 154863263 154863263 C T HTR5A Silent p.F218F 0.17 TCGA-28-5211-01 7 16841421 16841421 G A AGR2 5'UTR 0.20 TCGA-28-5211-01 7 50674041 50674041 G A GRB10 Missense_Mutation p.T422M 0.21 deleterious(0.04) benign(0.028) TCGA-28-5211-01 8 117950594 117950594 G T AARD Missense_Mutation p.G38W 0.10 deleterious(0.01) probably_damaging(0.995) TCGA-28-5211-01 8 12957581 12957581 C T DLC1 Silent p.T755T 0.26 TCGA-28-5211-01 9 130670779 130670779 C T ST6GALNAC4 Silent p.E267E 0.13 TCGA-28-5211-01 9 131476566 131476566 C T PKN3 Missense_Mutation p.P468L 0.30 tolerated(0.76) benign(0.062) TCGA-28-5211-01 X 10106933 10106933 G T WWC3 Missense_Mutation p.R1014L 0.18 deleterious(0.02) probably_damaging(0.931) TCGA-28-5211-01 X 11682473 11682473 G A ARHGAP6 Missense_Mutation p.S159F 0.48 tolerated_low_confidence(0.32) benign(0.259) TCGA-28-5211-01 X 141291609 141291609 G T MAGEC2 Missense_Mutation p.F55L 0.44 tolerated(1) benign(0.002) TCGA-28-5213-01 10 13043287 13043287 G A CCDC3 Missense_Mutation p.A95V 0.24 deleterious(0.01) probably_damaging(0.917) TCGA-28-5213-01 11 118375649 118375649 A C KMT2A Silent p.S3014S 0.22 TCGA-28-5213-01 11 122680757 122680757 A G UBASH3B 3'UTR 0.23 TCGA-28-5213-01 11 62288237 62288237 G A AHNAK Missense_Mutation p.P4551L 0.23 possibly_damaging(0.905) TCGA-28-5213-01 11 62396739 62396739 G A GANAB Silent p.A643A 0.20 TCGA-28-5213-01 11 65628471 65628471 C T MUS81 Silent p.L55L 0.19 TCGA-28-5213-01 11 74800717 74800717 G A OR2AT4 Silent p.P14P 0.24 TCGA-28-5213-01 12 109921388 109921388 G A UBE3B Nonsense_Mutation p.W11* 0.22 TCGA-28-5213-01 12 121880495 121880495 C T KDM2B Missense_Mutation p.A917T 0.26 deleterious_low_confidence(0.02) probably_damaging(0.998) TCGA-28-5213-01 12 32137685 32137685 A C KIAA1551 Missense_Mutation p.S1266R 0.21 deleterious(0.01) possibly_damaging(0.691) TCGA-28-5213-01 12 4920964 4920964 T C KCNA6 3'UTR 0.13 TCGA-28-5213-01 12 57562923 57562923 A G LRP1 Missense_Mutation p.D999G 0.22 possibly_damaging(0.566) TCGA-28-5213-01 13 23942617 23942617 C A SACS Missense_Mutation p.G90V 0.17 probably_damaging(0.999) TCGA-28-5213-01 14 51027003 51027003 A G ATL1 Missense_Mutation p.D7G 0.07 deleterious_low_confidence(0.04) benign(0.047) TCGA-28-5213-01 15 102194712 102194712 C A TARSL2 3'UTR 0.09 TCGA-28-5213-01 15 25953147 25953147 G A ATP10A Silent p.L851L 0.26 TCGA-28-5213-01 15 44090144 44090144 A G SERINC4 Silent p.A202A 0.05 TCGA-28-5213-01 16 89261354 89261354 G A CDH15 Missense_Mutation p.A746T 0.24 deleterious(0.02) probably_damaging(0.99) TCGA-28-5213-01 16 9857047 9857047 G A GRIN2A Missense_Mutation p.R1452C 0.24 deleterious(0) probably_damaging(0.961) TCGA-28-5213-01 16 9934645 9934645 G A GRIN2A Missense_Mutation p.R504W 0.24 deleterious(0) probably_damaging(0.956) TCGA-28-5213-01 17 54925329 54925329 G T DGKE Missense_Mutation p.C264F 0.19 deleterious(0) probably_damaging(1) TCGA-28-5213-01 17 8158344 8158344 G A PFAS Splice_Site p.X93_splice 0.14 TCGA-28-5213-01 17 9066204 9066204 G A NTN1 Missense_Mutation p.G365R 0.34 deleterious(0) probably_damaging(0.982) TCGA-28-5213-01 19 1257138 1257138 G A MIDN Missense_Mutation p.G425D 0.26 tolerated(0.15) probably_damaging(0.931) TCGA-28-5213-01 19 5844200 5844200 G A FUT3 Silent p.L217L 0.22 TCGA-28-5213-01 19 9069909 9069909 C A MUC16 Missense_Mutation p.R5846M 0.26 unknown(0) TCGA-28-5213-01 1 13911976 13911976 C G PDPN Intron 0.25 TCGA-28-5213-01 1 152083970 152083970 G A TCHH Missense_Mutation p.R575C 0.25 unknown(0) TCGA-28-5213-01 1 158606471 158606471 C T SPTA1 Missense_Mutation p.R1757H 0.21 tolerated(0.06) benign(0.141) TCGA-28-5213-01 1 158906881 158906881 G A PYHIN1 Missense_Mutation p.G61S 0.14 tolerated(0.4) probably_damaging(0.916) TCGA-28-5213-01 1 18808936 18808936 G A KLHDC7A Silent p.R487R 0.28 TCGA-28-5213-01 1 201195009 201195009 C T IGFN1 Missense_Mutation p.T3515M 0.25 probably_damaging(0.998) TCGA-28-5213-01 1 233086388 233086388 A G NTPCR 5'UTR 0.19 TCGA-28-5213-01 1 248436203 248436203 G A OR2T33 Missense_Mutation p.T305M 0.19 deleterious(0.01) benign(0.11) TCGA-28-5213-01 1 28833881 28833881 A G SNORA73B 5'Flank 0.21 TCGA-28-5213-01 1 38079485 38079485 G A RSPO1 Silent p.S172S 0.31 TCGA-28-5213-01 1 47078629 47078629 A G MOB3C Missense_Mutation p.M174T 0.17 deleterious(0) probably_damaging(0.975) TCGA-28-5213-01 1 55273665 55273665 G A C1orf177 Missense_Mutation p.R154H 0.24 deleterious(0) probably_damaging(0.991) TCGA-28-5213-01 1 62253476 62253476 C T INADL Silent p.N300N 0.21 TCGA-28-5213-01 1 6634905 6634905 G A TAS1R1 Missense_Mutation p.C238Y 0.26 deleterious(0) probably_damaging(1) TCGA-28-5213-01 20 43933304 43933304 G A MATN4 Silent p.N69N 0.16 TCGA-28-5213-01 20 60897158 60897158 C T LAMA5 Missense_Mutation p.S2138N 0.20 benign(0.086) TCGA-28-5213-01 2 113315616 113315616 T C POLR1B Missense_Mutation p.F430L 0.22 tolerated(1) benign(0.015) TCGA-28-5213-01 2 179410767 179410767 C T TTN Silent p.P31732P 0.22 TCGA-28-5213-01 2 219206751 219206751 G A PNKD Missense_Mutation p.R222Q 0.20 tolerated(0.16) benign(0.017) TCGA-28-5213-01 2 56603032 56603032 C T CCDC85A Missense_Mutation p.P512S 0.20 tolerated_low_confidence(0.33) benign(0.003) TCGA-28-5213-01 3 122003457 122003457 C T CASR Missense_Mutation p.R896W 0.27 deleterious_low_confidence(0) probably_damaging(0.937) TCGA-28-5213-01 3 151475455 151475455 A G AADACL2 3'UTR 0.19 TCGA-28-5213-01 3 172165482 172165482 C T GHSR Missense_Mutation p.R241Q 0.19 tolerated(0.19) benign(0.055) TCGA-28-5213-01 3 20225255 20225255 T C SGOL1 Missense_Mutation p.K62E 0.21 deleterious(0) benign(0.403) TCGA-28-5213-01 3 50655078 50655078 C T MAPKAPK3 Missense_Mutation p.P28S 0.21 tolerated_low_confidence(0.39) benign(0.009) TCGA-28-5213-01 4 68527826 68527826 A G UBA6 Intron 0.24 TCGA-28-5213-01 4 72649840 72649840 T C GC Intron 0.22 TCGA-28-5213-01 4 85634313 85634313 C T WDFY3 Missense_Mutation p.G2681R 0.20 deleterious(0) possibly_damaging(0.54) TCGA-28-5213-01 5 101834365 101834365 C T SLCO6A1 Missense_Mutation p.G62S 0.19 tolerated(0.7) benign(0.149) TCGA-28-5213-01 5 36038103 36038103 C T UGT3A2 Missense_Mutation p.R364H 0.17 tolerated(0.16) benign(0.354) TCGA-28-5213-01 5 80366210 80366210 T C RASGRF2 Intron 0.27 TCGA-28-5213-01 6 50791291 50791291 C T TFAP2B Missense_Mutation p.P85S 0.12 tolerated(0.06) benign(0.077) TCGA-28-5213-01 6 56480201 56480201 T C DST Intron 0.17 TCGA-28-5213-01 7 40172717 40172717 T C MPLKIP Missense_Mutation p.S161G 0.17 deleterious(0.05) possibly_damaging(0.682) TCGA-28-5213-01 7 45717835 45717835 G A ADCY1 Missense_Mutation p.G624D 0.16 deleterious(0) possibly_damaging(0.847) TCGA-28-5213-01 7 48056901 48056901 A G SUN3 Silent p.Y82Y 0.18 TCGA-28-5213-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.18 deleterious(0) possibly_damaging(0.75) TCGA-28-5213-01 9 102784454 102784454 C T ERP44 Missense_Mutation p.R114H 0.19 deleterious(0) possibly_damaging(0.848) TCGA-28-5213-01 9 73213424 73213424 C T TRPM3 Missense_Mutation p.V975M 0.23 deleterious(0) possibly_damaging(0.896) TCGA-28-5213-01 X 1746630 1746630 G A ASMT Missense_Mutation p.V137I 0.21 tolerated(0.59) benign(0.107) TCGA-28-5213-01 X 30327199 30327199 C T NR0B1 Silent p.P94P 0.36 TCGA-28-5213-01 X 73962950 73962950 C T KIAA2022 Missense_Mutation p.R481Q 0.32 deleterious(0) probably_damaging(1) TCGA-28-5214-01 11 65367001 65367001 C A MAP3K11 Silent p.P690P 0.15 TCGA-28-5214-01 12 131438960 131438960 C G GPR133 5'UTR 0.15 TCGA-28-5214-01 12 42631967 42631967 T G YAF2 Missense_Mutation p.S6R 0.12 deleterious(0) probably_damaging(0.981) TCGA-28-5214-01 12 95603097 95603097 C T FGD6 Missense_Mutation p.G655R 0.37 tolerated(0.52) possibly_damaging(0.454) TCGA-28-5214-01 13 24330744 24330744 G A MIPEP Missense_Mutation p.R662C 0.07 deleterious(0) benign(0.4) TCGA-28-5214-01 13 50623315 50623315 T G DLEU2 Intron 0.47 TCGA-28-5214-01 14 106174430 106174430 G T IGHA1 Missense_Mutation p.P120H 0.38 tolerated(0.61) benign(0.014) TCGA-28-5214-01 14 106733326 106733326 G A IGHV1-24 Nonsense_Mutation p.R57* 0.30 TCGA-28-5214-01 15 20657646 20657646 G A HERC2P3 RNA 0.11 TCGA-28-5214-01 15 23445491 23445491 G T AC100757.1 3'Flank 0.14 TCGA-28-5214-01 15 33359642 33359642 A G FMN1 Silent p.S148S 0.30 TCGA-28-5214-01 15 62182532 62182532 C T VPS13C Missense_Mutation p.R3058H 0.26 deleterious(0.04) probably_damaging(0.999) TCGA-28-5214-01 15 89421142 89421142 C T HAPLN3 3'UTR 0.35 TCGA-28-5214-01 15 96877739 96877739 C T NR2F2 Missense_Mutation p.R293W 0.37 deleterious(0) probably_damaging(0.998) TCGA-28-5214-01 16 4827935 4827935 T A SEPT12 Nonsense_Mutation p.R314* 0.29 TCGA-28-5214-01 17 26864328 26864328 A C FOXN1 Silent p.A607A 0.32 TCGA-28-5214-01 17 42882434 42882434 A G GJC1 Missense_Mutation p.L251P 0.24 deleterious(0.01) probably_damaging(0.934) TCGA-28-5214-01 17 47247186 47247186 A C B4GALNT2 3'UTR 0.50 TCGA-28-5214-01 18 14479332 14479332 G A CXADRP3 RNA 0.36 TCGA-28-5214-01 18 58039563 58039563 C T MC4R Missense_Mutation p.R7H 0.35 tolerated_low_confidence(0.9) benign(0) TCGA-28-5214-01 19 12638084 12638084 G A ZNF564 Missense_Mutation p.P280S 0.15 deleterious(0.02) probably_damaging(0.992) TCGA-28-5214-01 19 43762524 43762524 G C PSG9 Missense_Mutation p.S358C 0.05 tolerated(0.12) probably_damaging(1) TCGA-28-5214-01 19 4475292 4475292 C T HDGFRP2 Silent p.G31G 0.11 TCGA-28-5214-01 19 48878966 48878966 C T SYNGR4 Missense_Mutation p.A143V 0.21 deleterious(0.02) benign(0.376) TCGA-28-5214-01 19 55106242 55106242 T C LILRA1 Silent p.Y61Y 0.27 TCGA-28-5214-01 1 1256376 1256376 G A CPSF3L Silent p.D48D 0.33 TCGA-28-5214-01 1 164816033 164816033 A G PBX1 3'UTR 0.48 TCGA-28-5214-01 1 201289494 201289494 C T PKP1 Silent p.S465S 0.04 TCGA-28-5214-01 1 216061963 216061963 C T USH2A Silent p.P2676P 0.44 TCGA-28-5214-01 1 39833905 39833905 C T MACF1 Missense_Mutation p.A2224V 0.34 benign(0.005) TCGA-28-5214-01 1 5937354 5937354 T C NPHP4 Silent p.K872K 0.38 TCGA-28-5214-01 1 92528664 92528664 G A EPHX4 Missense_Mutation p.G304R 0.31 deleterious(0) probably_damaging(1) TCGA-28-5214-01 20 13279761 13279761 C T ISM1 Silent p.D350D 0.09 TCGA-28-5214-01 2 120385285 120385285 C T PCDP1 Missense_Mutation p.R525W 0.36 tolerated(0.06) benign(0.021) TCGA-28-5214-01 2 169757785 169757785 G A G6PC2 5'UTR 0.12 TCGA-28-5214-01 3 100349573 100349573 A G GPR128 Missense_Mutation p.Y85C 0.43 tolerated(0.08) possibly_damaging(0.711) TCGA-28-5214-01 3 38892224 38892224 C T SCN11A Missense_Mutation p.V1359M 0.31 deleterious(0.04) benign(0.26) TCGA-28-5214-01 4 10448055 10448055 G A ZNF518B 5'UTR 0.17 TCGA-28-5214-01 4 162577555 162577555 T C FSTL5 Silent p.Q273Q 0.26 TCGA-28-5214-01 4 69536075 69536075 C A UGT2B15 Missense_Mutation p.D88Y 0.38 tolerated(0.13) benign(0.021) TCGA-28-5214-01 4 85611704 85611704 C G WDFY3 Missense_Mutation p.E3106D 0.06 tolerated(0.06) benign(0.084) TCGA-28-5214-01 5 125971812 125971812 G A C5orf48 Missense_Mutation p.R95H 0.07 deleterious(0.03) benign(0.035) TCGA-28-5214-01 5 140033536 140033536 G - IK Frame_Shift_Del p.A140Qfs*7 0.26 TCGA-28-5214-01 5 140783915 140783915 G A PCDHGA9 Missense_Mutation p.A466T 0.33 deleterious_low_confidence(0.01) benign(0.088) TCGA-28-5214-01 5 168690641 168690641 G A SLIT3 Intron 0.32 TCGA-28-5214-01 5 179393829 179393829 C T RNF130 Missense_Mutation p.G376E 0.34 deleterious_low_confidence(0.02) possibly_damaging(0.905) TCGA-28-5214-01 5 26988213 26988213 C G CDH9 Missense_Mutation p.K76N 0.27 deleterious(0.02) probably_damaging(0.998) TCGA-28-5214-01 5 87516377 87516377 T A TMEM161B Intron 0.34 TCGA-28-5214-01 6 12123451 12123451 C T HIVEP1 Silent p.S1141S 0.34 TCGA-28-5214-01 6 49754388 49754388 G A PGK2 Silent p.R171R 0.30 TCGA-28-5214-01 7 106509059 106509059 C T PIK3CG Silent p.T351T 0.21 TCGA-28-5214-01 7 142460295 142460295 C T PRSS1 Silent p.D156D 0.12 TCGA-28-5214-01 7 41729925 41729925 T A INHBA Missense_Mutation p.S202C 0.21 tolerated(0.06) possibly_damaging(0.823) TCGA-28-5214-01 7 75617603 75617603 A C POR 3'Flank 0.17 TCGA-28-5214-01 7 98636012 98636012 G A SMURF1 Missense_Mutation p.R589W 0.23 deleterious(0) probably_damaging(0.98) TCGA-28-5214-01 9 112015778 112015778 T C EPB41L4B Missense_Mutation p.T408A 0.31 deleterious(0.03) probably_damaging(0.998) TCGA-28-5214-01 9 27949565 27949565 G A LINGO2 Nonsense_Mutation p.R369* 0.38 TCGA-28-5214-01 9 40771979 40771979 G A ZNF658 3'UTR 0.15 TCGA-28-5214-01 X 149013838 149013838 G A MAGEA8 Silent p.A264A 0.69 TCGA-28-5214-01 X 72667327 72667327 C T CDX4 Nonsense_Mutation p.R80* 0.64 TCGA-28-5214-01 X 76918965 76918965 C T ATRX Silent p.R1342R 0.04 TCGA-28-5215-01 10 73375274 73375274 C G CDH23 Missense_Mutation p.S282R 0.05 tolerated(0.32) possibly_damaging(0.67) TCGA-28-5215-01 11 55606777 55606777 T C OR5D16 Missense_Mutation p.S184P 0.31 tolerated(0.33) benign(0.327) TCGA-28-5215-01 11 75852116 75852116 G T UVRAG Nonsense_Mutation p.E587* 0.08 TCGA-28-5215-01 11 824015 824015 G A PNPLA2 Missense_Mutation p.V313M 0.36 tolerated(0.2) benign(0.007) TCGA-28-5215-01 12 104171501 104171501 G C NT5DC3 3'UTR 0.42 TCGA-28-5215-01 12 129694161 129694161 G A TMEM132D Silent p.A449A 0.17 TCGA-28-5215-01 12 50387942 50387942 G C RACGAP1 Silent p.R437R 0.37 TCGA-28-5215-01 12 57571370 57571370 G A LRP1 Missense_Mutation p.A1453T 0.34 probably_damaging(0.983) TCGA-28-5215-01 14 21109809 21109809 G A OR6S1 Silent p.F14F 0.64 TCGA-28-5215-01 14 42373388 42373388 C T LRFN5 3'UTR 0.53 TCGA-28-5215-01 15 41191139 41191139 G A VPS18 Missense_Mutation p.V90M 0.37 tolerated(0.08) benign(0.014) TCGA-28-5215-01 15 45814527 45814527 C T SLC30A4 Missense_Mutation p.R9H 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.794) TCGA-28-5215-01 16 46615749 46615749 C T SHCBP1 Silent p.G637G 0.42 TCGA-28-5215-01 17 10432722 10432722 A T MYH2 Nonsense_Mutation p.L1065* 0.64 TCGA-28-5215-01 17 21731427 21731427 G T UBBP4 Intron 0.36 TCGA-28-5215-01 17 39780481 39780481 C T KRT17 Missense_Mutation p.R94H 0.33 deleterious(0.01) probably_damaging(0.992) TCGA-28-5215-01 17 65157047 65157047 C T HELZ Missense_Mutation p.A681T 0.37 deleterious(0) probably_damaging(0.992) TCGA-28-5215-01 17 7579312 7579312 C T TP53 Silent p.T125T 0.53 TCGA-28-5215-01 18 5434010 5434010 T C EPB41L3 Missense_Mutation p.D239G 0.32 deleterious(0) probably_damaging(1) TCGA-28-5215-01 19 3547922 3547922 G C MFSD12 Missense_Mutation p.T254S 0.32 benign(0.015) TCGA-28-5215-01 1 104112467 104112467 G T AMY2B Intron 0.32 TCGA-28-5215-01 1 155785743 155785743 C T GON4L Intron 0.52 TCGA-28-5215-01 1 209961847 209961847 C T IRF6 Missense_Mutation p.R441H 0.09 tolerated(0.4) benign(0.121) TCGA-28-5215-01 1 94032964 94032964 A G BCAR3 Missense_Mutation p.F724S 0.40 tolerated(0.53) probably_damaging(0.937) TCGA-28-5215-01 22 24452748 24452748 G A CABIN1 Missense_Mutation p.R396H 0.32 deleterious(0) probably_damaging(0.996) TCGA-28-5215-01 2 113950118 113950118 G A PSD4 Missense_Mutation p.R597H 0.38 tolerated(1) benign(0.001) TCGA-28-5215-01 2 234112804 234112804 C T INPP5D Missense_Mutation p.T991M 0.33 deleterious(0.02) benign(0.234) TCGA-28-5215-01 3 164733001 164733001 A G SI Silent p.N1303N 0.43 TCGA-28-5215-01 3 32933302 32933302 A G TRIM71 Silent p.%3D 0.32 TCGA-28-5215-01 4 115998231 115998231 G A NDST4 5'UTR 0.27 TCGA-28-5215-01 4 189012730 189012730 C T TRIML2 Missense_Mutation p.G321S 0.30 deleterious(0.02) probably_damaging(0.989) TCGA-28-5215-01 5 140176553 140176553 G A PCDHA2 Silent p.S668S 0.05 TCGA-28-5215-01 6 100911318 100911318 C T SIM1 Silent p.A9A 0.37 TCGA-28-5215-01 6 159655381 159655381 G A FNDC1 Silent p.P1279P 0.45 TCGA-28-5215-01 6 160932037 160932037 C T LPAL2 RNA 0.28 TCGA-28-5215-01 7 29438049 29438049 C T CHN2 Silent p.A79A 0.34 TCGA-28-5215-01 7 36366267 36366267 C T KIAA0895 3'UTR 0.35 TCGA-28-5215-01 7 95115358 95115358 A G ASB4 Silent p.L25L 0.40 TCGA-28-5215-01 8 41566469 41566469 C T ANK1 Missense_Mutation p.A642T 0.28 deleterious(0) benign(0.291) TCGA-28-5215-01 8 87162356 87162356 C T ATP6V0D2 Missense_Mutation p.R219C 0.22 deleterious(0) probably_damaging(0.985) TCGA-28-5215-01 9 18777555 18777555 C T ADAMTSL1 Missense_Mutation p.R1110C 0.26 deleterious(0) possibly_damaging(0.696) TCGA-28-5215-01 X 110644549 110644549 T G DCX Missense_Mutation p.Y206S 0.35 deleterious(0) probably_damaging(1) TCGA-28-5215-01 X 153663708 153663708 G A ATP6AP1 Missense_Mutation p.A354T 0.30 tolerated(0.07) benign(0.01) TCGA-28-5215-01 X 21875386 21875386 G A YY2 Missense_Mutation p.E262K 0.33 tolerated(0.21) benign(0.067) TCGA-28-5215-01 X 47918931 47918931 G C ZNF630 Missense_Mutation p.F300L 0.30 deleterious(0.01) benign(0.035) TCGA-28-5215-01 X 51075798 51075798 G A NUDT10 5'UTR 0.26 TCGA-28-5215-01 X 77395131 77395131 G A TAF9B 5'UTR 0.35 TCGA-28-5216-01 10 119014867 119014867 C T SLC18A2 Silent p.L260L 0.81 TCGA-28-5216-01 10 89653826 89653826 C G PTEN Missense_Mutation p.L42V 0.69 tolerated(0.05) benign(0.074) TCGA-28-5216-01 11 101952014 101952014 T C C11orf70 Splice_Site p.X225_splice 0.23 TCGA-28-5216-01 11 4673967 4673967 G C OR51E1 Missense_Mutation p.G71R 0.36 deleterious(0.03) benign(0.419) TCGA-28-5216-01 11 48238725 48238725 G A OR4B1 Missense_Mutation p.V122M 0.43 deleterious(0.03) benign(0.223) TCGA-28-5216-01 11 60164081 60164081 A T MS4A14 Silent p.A10A 0.55 TCGA-28-5216-01 11 72946285 72946285 C T P2RY2 Missense_Mutation p.R361W 0.44 tolerated_low_confidence(0.05) benign(0.001) TCGA-28-5216-01 11 75160035 75160035 C T GDPD5 Missense_Mutation p.R234H 0.51 deleterious(0) probably_damaging(0.973) TCGA-28-5216-01 11 77920718 77920718 G A USP35 Missense_Mutation p.C606Y 0.26 tolerated(1) unknown(0) TCGA-28-5216-01 11 93803618 93803618 G A HEPHL1 Missense_Mutation p.R381H 0.44 tolerated(1) benign(0.001) TCGA-28-5216-01 11 94278241 94278244 CAAC - FUT4 Frame_Shift_Del p.N315Gfs*46 0.33 TCGA-28-5216-01 12 101796696 101796696 C T ARL1 Silent p.T57T 0.30 TCGA-28-5216-01 12 114397014 114397014 C A RBM19 Intron 0.21 TCGA-28-5216-01 12 24048786 24048786 A G SOX5 Missense_Mutation p.S71P 0.51 tolerated_low_confidence(0.22) benign(0.328) TCGA-28-5216-01 12 49177053 49177053 G T ADCY6 Silent p.P55P 0.44 TCGA-28-5216-01 12 49177063 49177063 G A ADCY6 Missense_Mutation p.P52L 0.40 tolerated(0.09) benign(0.004) TCGA-28-5216-01 12 88505570 88505570 A G CEP290 Silent p.D706D 0.11 TCGA-28-5216-01 14 105518249 105518249 G A GPR132 Silent p.N75N 0.85 TCGA-28-5216-01 14 31816973 31816973 C T HEATR5A Missense_Mutation p.S657N 0.64 tolerated(0.28) benign(0.007) TCGA-28-5216-01 14 89336400 89336400 T C TTC8 Intron 0.74 TCGA-28-5216-01 14 93813693 93813693 C A COX8C Missense_Mutation p.R27S 0.15 deleterious(0.01) benign(0.058) TCGA-28-5216-01 15 20642610 20642610 T G HERC2P3 RNA 0.33 TCGA-28-5216-01 15 90189143 90189143 G A KIF7 Missense_Mutation p.R635W 0.09 deleterious(0.04) possibly_damaging(0.487) TCGA-28-5216-01 16 20357616 20357616 A T UMOD Missense_Mutation p.N338K 0.28 tolerated(0.32) possibly_damaging(0.608) TCGA-28-5216-01 17 10428377 10428377 A G MYH2 Silent p.S1556S 0.83 TCGA-28-5216-01 17 66924136 66924136 A T ABCA8 Silent p.I398I 0.83 TCGA-28-5216-01 17 7577535 7577535 C A TP53 Missense_Mutation p.R249M 0.78 deleterious(0) probably_damaging(0.993) TCGA-28-5216-01 17 7811263 7811263 G A CHD3 Missense_Mutation p.R1752Q 0.36 benign(0.238) TCGA-28-5216-01 18 29052349 29052349 A G DSG3 Missense_Mutation p.H667R 0.19 tolerated(0.29) benign(0.025) TCGA-28-5216-01 19 14079442 14079442 C T RFX1 Missense_Mutation p.G556E 0.32 deleterious(0.04) possibly_damaging(0.694) TCGA-28-5216-01 19 17013524 17013524 G A CPAMD8 Silent p.D1587D 0.34 TCGA-28-5216-01 19 22785639 22785639 A T AC011467.1 3'Flank 0.28 TCGA-28-5216-01 19 3823274 3823274 C A ZFR2 Silent p.A447A 0.09 TCGA-28-5216-01 19 45021085 45021085 C T CEACAM20 RNA 0.50 TCGA-28-5216-01 19 53761868 53761868 C T VN1R2 Silent p.H80H 0.53 TCGA-28-5216-01 1 151237667 151237667 A G PSMD4 Missense_Mutation p.K132R 0.05 deleterious(0.02) possibly_damaging(0.766) TCGA-28-5216-01 1 152190773 152190773 T A HRNR Missense_Mutation p.Q1111L 0.11 unknown(0) TCGA-28-5216-01 1 152323039 152323040 CT A FLG2 3'UTR 0.36 TCGA-28-5216-01 1 168549318 168549318 T G XCL1 Missense_Mutation p.S27A 0.41 tolerated(0.16) benign(0.079) TCGA-28-5216-01 1 186282107 186282107 A G TPR 3'UTR 0.50 TCGA-28-5216-01 1 222717273 222717273 G C HHIPL2 Missense_Mutation p.L194V 0.06 deleterious(0) probably_damaging(0.987) TCGA-28-5216-01 1 32801650 32801650 G A MARCKSL1 5'UTR 0.14 TCGA-28-5216-01 20 44639814 44639814 G A MMP9 Missense_Mutation p.A228T 0.59 deleterious(0.04) benign(0.014) TCGA-28-5216-01 20 50408434 50408434 C A SALL4 Silent p.R196R 0.30 TCGA-28-5216-01 21 11098855 11098855 A G BAGE2 RNA 0.28 TCGA-28-5216-01 2 179496000 179496000 A C TTN Missense_Mutation p.L14592R 0.24 TCGA-28-5216-01 2 196753131 196753131 C G DNAH7 Missense_Mutation p.E1753Q 0.05 deleterious(0) probably_damaging(0.992) TCGA-28-5216-01 2 207171009 207171009 A G ZDBF2 Missense_Mutation p.D586G 0.28 deleterious(0.03) possibly_damaging(0.857) TCGA-28-5216-01 2 27861753 27861753 C T GPN1 Missense_Mutation p.T205I 0.08 tolerated(0.24) benign(0.206) TCGA-28-5216-01 3 169487253 169487253 G A ACTRT3 Missense_Mutation p.A19V 0.05 tolerated(0.05) probably_damaging(0.996) TCGA-28-5216-01 3 32031844 32031844 T G ZNF860 Missense_Mutation p.S425A 0.29 deleterious(0.01) benign(0.035) TCGA-28-5216-01 3 47127761 47127761 T C SETD2 Missense_Mutation p.H1774R 0.28 deleterious(0.01) probably_damaging(0.996) TCGA-28-5216-01 3 57898233 57898233 G T SLMAP Missense_Mutation p.A575S 0.57 deleterious_low_confidence(0.02) benign(0.032) TCGA-28-5216-01 4 123238013 123238013 C G KIAA1109 Missense_Mutation p.L3556V 0.44 probably_damaging(0.992) TCGA-28-5216-01 4 175229838 175229838 A G CEP44 Splice_Site p.X170_splice 0.41 TCGA-28-5216-01 5 124080387 124080387 T G ZNF608 Missense_Mutation p.K99T 0.50 tolerated(0.12) probably_damaging(0.996) TCGA-28-5216-01 5 140166327 140166327 G A PCDHA1 Missense_Mutation p.R151H 0.43 tolerated_low_confidence(0.17) benign(0.026) TCGA-28-5216-01 6 16141881 16141881 G C MYLIP Missense_Mutation p.E102Q 0.41 tolerated(0.42) benign(0.306) TCGA-28-5216-01 6 49573330 49573330 A C RHAG 3'UTR 0.46 TCGA-28-5216-01 7 100701312 100701312 C T MUC17 Missense_Mutation p.T4490M 0.33 unknown(0) TCGA-28-5216-01 7 143701298 143701298 A T OR6B1 Missense_Mutation p.E70V 0.48 deleterious(0) probably_damaging(0.999) TCGA-28-5216-01 7 47698593 47698593 C A C7orf65 Missense_Mutation p.L75I 0.45 deleterious_low_confidence(0) possibly_damaging(0.567) TCGA-28-5216-01 8 140630517 140630517 C T KCNK9 Missense_Mutation p.R370H 0.47 deleterious(0) possibly_damaging(0.891) TCGA-28-5216-01 8 144992145 144992145 C T PLEC Silent p.S4085S 0.31 TCGA-28-5216-01 8 93027036 93027036 G A RUNX1T1 Missense_Mutation p.T91M 0.57 tolerated(0.16) possibly_damaging(0.513) TCGA-28-5216-01 9 139755072 139755072 C T MAMDC4 3'UTR 0.36 TCGA-28-5216-01 X 70325861 70325861 C T CXorf65 Missense_Mutation p.R80H 0.87 tolerated(0.27) benign(0.116) TCGA-28-5218-01 11 64575521 64575521 G A MEN1 Nonsense_Mutation p.Q171* 0.48 TCGA-28-5218-01 11 71942586 71942586 C - INPPL1 Frame_Shift_Del p.K515Sfs*16 0.42 TCGA-28-5218-01 11 94924753 94924756 TTGC - SESN3 Frame_Shift_Del p.A52Tfs*27 0.63 TCGA-28-5218-01 13 115070488 115070488 A G UPF3A 3'UTR 0.50 TCGA-28-5218-01 16 30774843 30774843 G A RNF40 Silent p.G135G 0.14 TCGA-28-5218-01 17 39197186 39197186 C T KRTAP1-1 Missense_Mutation p.R155H 0.23 deleterious(0) probably_damaging(0.991) TCGA-28-5218-01 19 4668644 4668644 C T C19orf10 Missense_Mutation p.C63Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-28-5218-01 19 56539217 56539217 T A NLRP5 Missense_Mutation p.W540R 0.35 deleterious(0) possibly_damaging(0.85) TCGA-28-5218-01 19 9267420 9267420 C T ZNF317 Missense_Mutation p.S53F 0.39 tolerated(0.07) benign(0.232) TCGA-28-5218-01 1 186121993 186121993 T G HMCN1 Missense_Mutation p.V5003G 0.17 probably_damaging(0.992) TCGA-28-5218-01 1 22835047 22835047 G T ZBTB40 Missense_Mutation p.D508Y 0.63 deleterious(0) unknown(0) TCGA-28-5218-01 1 228559651 228559651 C T OBSCN Missense_Mutation p.P8015S 0.16 possibly_damaging(0.579) TCGA-28-5218-01 1 233518426 233518426 T C MLK4 Missense_Mutation p.I1027T 0.20 deleterious(0.05) benign(0.169) TCGA-28-5218-01 20 2443779 2443779 C T SNRPB Missense_Mutation p.R172H 0.47 tolerated(0.18) unknown(0) TCGA-28-5218-01 2 164467616 164467616 G A FIGN Silent p.L242L 0.44 TCGA-28-5218-01 3 196613120 196613120 G A SENP5 Nonsense_Mutation p.W356* 0.65 TCGA-28-5218-01 3 197401214 197401214 G C KIAA0226 3'Flank 0.46 TCGA-28-5218-01 7 100677921 100677921 C T MUC17 Missense_Mutation p.T1075I 0.12 benign(0) TCGA-28-5218-01 7 143098437 143098437 G A EPHA1 Nonsense_Mutation p.R138* 0.15 TCGA-28-5218-01 8 104075258 104075258 C G ATP6V1C1 Missense_Mutation p.H239Q 0.30 tolerated(0.3) benign(0.005) TCGA-28-5218-01 8 133645122 133645122 C T LRRC6 Missense_Mutation p.E173K 0.46 deleterious(0) benign(0.358) TCGA-28-5218-01 8 96167120 96167120 C G PLEKHF2 3'UTR 0.07 TCGA-28-5218-01 9 22006044 22006044 G T CDKN2B Missense_Mutation p.A120D 0.69 deleterious(0) probably_damaging(1) TCGA-28-5218-01 9 22006068 22006068 C A CDKN2B Missense_Mutation p.W112L 0.68 tolerated(0.72) benign(0.01) TCGA-28-5218-01 9 2717711 2717711 A G KCNV2 5'UTR 0.08 TCGA-28-5218-01 X 38260629 38260629 T C OTC Missense_Mutation p.L163P 0.70 deleterious(0) probably_damaging(0.993) TCGA-28-5218-01 X 73072156 73072156 T C XIST RNA 0.17 TCGA-28-5219-01 10 102748161 102748161 G A C10orf2 Missense_Mutation p.R65Q 0.60 tolerated(0.06) probably_damaging(0.999) TCGA-28-5219-01 11 55594981 55594981 G T OR5L2 Missense_Mutation p.G96V 0.37 deleterious(0.01) possibly_damaging(0.448) TCGA-28-5219-01 11 93543034 93543034 C A MED17 Missense_Mutation p.A579D 0.05 deleterious(0.02) benign(0.302) TCGA-28-5219-01 12 109719317 109719317 G T FOXN4 Missense_Mutation p.H397N 0.32 deleterious(0.02) benign(0.002) TCGA-28-5219-01 12 111099035 111099035 G A HVCN1 Silent p.P80P 0.37 TCGA-28-5219-01 12 53345364 53345364 C T KRT18 Missense_Mutation p.R253W 0.32 tolerated(0.21) benign(0.001) TCGA-28-5219-01 12 91347528 91347528 C G CCER1 Missense_Mutation p.G331A 0.42 tolerated(0.2) unknown(0) TCGA-28-5219-01 13 103418858 103418858 A G TEX30 Missense_Mutation p.S193P 0.64 deleterious(0.03) possibly_damaging(0.648) TCGA-28-5219-01 14 23586657 23586657 G A CEBPE 3'UTR 0.38 TCGA-28-5219-01 16 27499713 27499713 C G GTF3C1 Missense_Mutation p.G1179R 0.29 tolerated(0.08) possibly_damaging(0.779) TCGA-28-5219-01 17 34497343 34497343 G T TBC1D3B Missense_Mutation p.S191R 0.30 deleterious(0) probably_damaging(0.978) TCGA-28-5219-01 17 5329307 5329307 C A RPAIN Missense_Mutation p.S110R 0.09 tolerated(0.28) benign(0.032) TCGA-28-5219-01 17 7579699 7579699 C T TP53 Splice_Site p.X32_splice 0.68 TCGA-28-5219-01 19 15280951 15280951 C T NOTCH3 Silent p.G1715G 0.28 TCGA-28-5219-01 19 1578435 1578435 C T MBD3 Silent p.A260A 0.39 TCGA-28-5219-01 19 18648452 18648452 G A FKBP8 Missense_Mutation p.H302Y 0.43 tolerated(1) benign(0.028) TCGA-28-5219-01 19 22271297 22271297 G A ZNF257 Missense_Mutation p.V249I 0.32 tolerated(0.16) benign(0.001) TCGA-28-5219-01 19 39398200 39398200 C T NFKBIB Silent p.A290A 0.31 TCGA-28-5219-01 19 54544120 54544120 G A VSTM1 3'UTR 0.21 TCGA-28-5219-01 1 193099308 193099309 - AAATATT CDC73 Frame_Shift_Ins p.P84Kfs*6 0.17 TCGA-28-5219-01 1 1957086 1957086 G A GABRD Missense_Mutation p.V127M 0.31 deleterious(0) probably_damaging(1) TCGA-28-5219-01 1 201782286 201782286 C T NAV1 Missense_Mutation p.S1747L 0.40 deleterious(0) probably_damaging(0.981) TCGA-28-5219-01 1 237936883 237936883 C T RYR2 Missense_Mutation p.R3904W 0.29 probably_damaging(0.985) TCGA-28-5219-01 1 33354728 33354728 G A HPCA Missense_Mutation p.D77N 0.03 tolerated(0.26) probably_damaging(0.995) TCGA-28-5219-01 1 65301859 65301860 - AT JAK1 Frame_Shift_Ins p.A1061Lfs*16 0.33 TCGA-28-5219-01 1 8684379 8684379 T G RERE Missense_Mutation p.D129A 0.36 possibly_damaging(0.743) TCGA-28-5219-01 20 56728664 56728664 A T C20orf85 Missense_Mutation p.T45S 0.33 tolerated(0.2) benign(0.009) TCGA-28-5219-01 21 19713765 19713765 G C TMPRSS15 Missense_Mutation p.P510R 0.65 deleterious(0) probably_damaging(1) TCGA-28-5219-01 21 43161460 43161460 G A RIPK4 Silent p.N631N 0.70 TCGA-28-5219-01 22 18979498 18979498 G A DGCR5 RNA 0.27 TCGA-28-5219-01 22 22892481 22892481 C T PRAME Missense_Mutation p.R207H 0.35 tolerated(1) benign(0) TCGA-28-5219-01 2 121744096 121744096 G - GLI2 Frame_Shift_Del p.K734Rfs*63 0.27 TCGA-28-5219-01 2 179438951 179438951 G A TTN Missense_Mutation p.R23970W 0.25 TCGA-28-5219-01 2 179466465 179466465 C A TTN Missense_Mutation p.R18451L 0.31 TCGA-28-5219-01 2 196825609 196825609 G A DNAH7 Missense_Mutation p.R756C 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-28-5219-01 2 233432007 233432007 G A EIF4E2 Intron 0.05 TCGA-28-5219-01 2 86272410 86272410 T C POLR1A Missense_Mutation p.Y987C 0.07 deleterious(0) probably_damaging(1) TCGA-28-5219-01 3 152058532 152058532 A G TMEM14E Silent p.S54S 0.26 TCGA-28-5219-01 3 33194586 33194586 G A SUSD5 Missense_Mutation p.T513M 0.49 tolerated(0.05) possibly_damaging(0.891) TCGA-28-5219-01 3 52551109 52551109 C T STAB1 Silent p.D1491D 0.44 TCGA-28-5219-01 4 11401266 11401266 C T HS3ST1 Missense_Mutation p.A122T 0.18 deleterious(0.01) probably_damaging(0.994) TCGA-28-5219-01 4 122722785 122722786 - T EXOSC9 Intron 0.36 TCGA-28-5219-01 4 619881 619881 G A PDE6B Missense_Mutation p.E156K 0.44 tolerated(0.86) benign(0.05) TCGA-28-5219-01 4 70455276 70455276 C T UGT2A1 Missense_Mutation p.M632I 0.25 deleterious(0.03) benign(0.049) TCGA-28-5219-01 4 71062419 71062419 A T ODAM Missense_Mutation p.Q21L 0.31 deleterious(0) benign(0.005) TCGA-28-5219-01 5 140167892 140167892 G A PCDHA1 Missense_Mutation p.G673S 0.42 tolerated_low_confidence(0.13) benign(0.019) TCGA-28-5219-01 5 140616175 140616175 C T PCDHB18 RNA 0.39 TCGA-28-5219-01 5 66084566 66084566 G A MAST4 Missense_Mutation p.V196M 0.24 possibly_damaging(0.886) TCGA-28-5219-01 6 31838592 31838592 C T SLC44A4 Missense_Mutation p.A312T 0.30 deleterious(0) possibly_damaging(0.49) TCGA-28-5219-01 6 70637867 70637867 C T COL19A1 Silent p.N111N 0.30 TCGA-28-5219-01 7 150068992 150068992 C T REPIN1 Missense_Mutation p.A278V 0.10 tolerated(0.26) possibly_damaging(0.726) TCGA-28-5219-01 7 151904459 151904459 G C KMT2C Missense_Mutation p.A1256G 0.18 benign(0.14) TCGA-28-5219-01 7 157000142 157000142 T C UBE3C Missense_Mutation p.F490S 0.02 tolerated(0.84) benign(0.001) TCGA-28-5219-01 7 17378648 17378648 C T AHR Missense_Mutation p.T400M 0.20 tolerated(1) benign(0.002) TCGA-28-5219-01 7 71177153 71177153 G C WBSCR17 3'UTR 0.14 TCGA-28-5219-01 7 82784650 82784650 G A PCLO Missense_Mutation p.P436L 0.13 possibly_damaging(0.851) TCGA-28-5219-01 7 83277942 83277942 G C SEMA3E 5'UTR 0.29 TCGA-28-5219-01 7 84671590 84671590 T C SEMA3D Silent p.G291G 0.20 TCGA-28-5219-01 7 91708676 91708676 C - AKAP9 Frame_Shift_Del p.F2411Sfs*2 0.14 TCGA-28-5219-01 7 99702962 99702962 A T AP4M1 Missense_Mutation p.Q276L 0.04 deleterious(0.03) possibly_damaging(0.728) TCGA-28-5219-01 8 8234543 8234543 C T SGK223 Missense_Mutation p.R459Q 0.05 benign(0.002) TCGA-28-5219-01 9 116810979 116810979 G A ZNF618 Missense_Mutation p.R373Q 0.34 deleterious(0) probably_damaging(0.999) TCGA-28-5219-01 9 140389550 140389550 G A PNPLA7 Missense_Mutation p.R688W 0.34 deleterious(0) probably_damaging(0.996) TCGA-28-5219-01 9 39140559 39140559 T A CNTNAP3 Silent p.G611G 0.31 TCGA-28-5219-01 X 151900252 151900252 G A MAGEA12 Silent p.G183G 0.06 TCGA-28-5219-01 X 73524398 73524398 T A ZCCHC13 Missense_Mutation p.H99Q 0.16 deleterious(0) probably_damaging(1) TCGA-28-5220-01 10 27702773 27702773 G A PTCHD3 Missense_Mutation p.A136V 0.83 deleterious(0.01) benign(0.313) TCGA-28-5220-01 11 123624636 123624636 G A OR6X1 Silent p.G197G 0.10 TCGA-28-5220-01 11 5410816 5410816 C A OR51M1 Missense_Mutation p.T63N 0.06 deleterious(0.03) benign(0.312) TCGA-28-5220-01 11 57559037 57559037 G A CTNND1 Silent p.A29A 0.07 TCGA-28-5220-01 11 65270599 65270599 T C MALAT1 RNA 0.57 TCGA-28-5220-01 11 77924961 77924961 C T USP35 3'UTR 0.43 TCGA-28-5220-01 12 114282577 114282577 A G RBM19 Missense_Mutation p.L894P 0.39 deleterious(0) probably_damaging(1) TCGA-28-5220-01 12 95365322 95365322 G A NDUFA12 Missense_Mutation p.T111M 0.03 tolerated(0.13) possibly_damaging(0.505) TCGA-28-5220-01 14 24739285 24739285 G A RABGGTA Missense_Mutation p.R101W 0.56 deleterious(0) possibly_damaging(0.867) TCGA-28-5220-01 15 28630295 28630295 C G GOLGA8F Missense_Mutation p.P313R 0.11 deleterious(0) probably_damaging(0.931) TCGA-28-5220-01 16 4414382 4414382 C T CORO7 Silent p.R390R 0.47 TCGA-28-5220-01 16 85840496 85840496 G A COX4I1 3'UTR 0.39 TCGA-28-5220-01 17 33520922 33520922 T A SLC35G3 Missense_Mutation p.K135N 0.44 deleterious(0.01) probably_damaging(0.999) TCGA-28-5220-01 17 39041346 39041346 G A KRT20 Missense_Mutation p.T31M 0.38 tolerated(0.18) benign(0.004) TCGA-28-5220-01 17 45776024 45776024 C G TBKBP1 Missense_Mutation p.Q173E 0.65 tolerated(0.66) benign(0.014) TCGA-28-5220-01 17 74084564 74084564 T G EXOC7 Missense_Mutation p.D478A 0.50 deleterious(0.01) benign(0.186) TCGA-28-5220-01 18 72775660 72775660 G A ZNF407 Missense_Mutation p.A1995T 0.33 deleterious(0) probably_damaging(0.996) TCGA-28-5220-01 19 19790246 19790247 - C ZNF101 Frame_Shift_Ins p.I151Hfs*5 0.28 TCGA-28-5220-01 19 49910497 49910497 C T CCDC155 Missense_Mutation p.R293W 0.37 tolerated(0.21) benign(0.024) TCGA-28-5220-01 19 50387771 50387771 C T TBC1D17 Silent p.N433N 0.43 TCGA-28-5220-01 1 43396818 43396818 G A SLC2A1 Silent p.P58P 0.48 TCGA-28-5220-01 20 23431103 23431103 C T CST11 3'UTR 0.42 TCGA-28-5220-01 20 36789862 36789862 G A TGM2 Silent p.Y50Y 0.43 TCGA-28-5220-01 20 52830966 52830966 C T PFDN4 Missense_Mutation p.T34I 0.37 tolerated(0.08) benign(0.114) TCGA-28-5220-01 21 45786659 45786659 C G TRPM2 Missense_Mutation p.T149R 0.35 deleterious(0) probably_damaging(1) TCGA-28-5220-01 22 38471061 38471061 G A PICK1 Silent p.T390T 0.39 TCGA-28-5220-01 22 45813805 45813805 C T RIBC2 Missense_Mutation p.R174C 0.41 tolerated(0.06) possibly_damaging(0.854) TCGA-28-5220-01 2 105897164 105897164 C T TGFBRAP1 Missense_Mutation p.V380I 0.48 tolerated(0.2) benign(0.033) TCGA-28-5220-01 2 125367398 125367398 G A CNTNAP5 Missense_Mutation p.E592K 0.43 deleterious(0) benign(0.414) TCGA-28-5220-01 2 158114680 158114681 - C GALNT5 Frame_Shift_Ins p.M30Hfs*10 0.42 TCGA-28-5220-01 2 178936459 178936459 C G PDE11A Missense_Mutation p.D236H 0.39 deleterious(0.01) probably_damaging(0.998) TCGA-28-5220-01 2 18764143 18764143 T C NT5C1B Missense_Mutation p.N398D 0.05 deleterious(0.03) possibly_damaging(0.838) TCGA-28-5220-01 2 228882884 228882884 C T SPHKAP Missense_Mutation p.E896K 0.43 deleterious(0.01) possibly_damaging(0.449) TCGA-28-5220-01 3 150128250 150128250 C A TSC22D2 Silent p.P371P 0.15 TCGA-28-5220-01 3 42201751 42201751 C T TRAK1 Intron 0.45 TCGA-28-5220-01 5 149503887 149503887 G A PDGFRB Missense_Mutation p.S650L 0.39 deleterious(0) probably_damaging(1) TCGA-28-5220-01 5 41070948 41070948 G T MROH2B Missense_Mutation p.L3I 0.23 tolerated_low_confidence(0.25) benign(0.043) TCGA-28-5220-01 5 73931652 73931652 T C ENC1 Missense_Mutation p.Y220C 0.42 deleterious(0.01) probably_damaging(0.961) TCGA-28-5220-01 7 103191670 103191670 G A RELN Missense_Mutation p.A2049V 0.37 tolerated(0.1) probably_damaging(0.98) TCGA-28-5220-01 7 156451221 156451221 C G RNF32 Missense_Mutation p.P214R 0.28 deleterious(0) probably_damaging(0.999) TCGA-28-5220-01 7 30961834 30961834 C T AQP1 Missense_Mutation p.H180Y 0.36 deleterious(0) probably_damaging(1) TCGA-28-5220-01 7 4011129 4011129 C A SDK1 Missense_Mutation p.D582E 0.28 deleterious(0) possibly_damaging(0.8) TCGA-28-5220-01 7 47840381 47840381 G A PKD1L1 Missense_Mutation p.P2687S 0.29 tolerated(0.69) benign(0.014) TCGA-28-5220-01 8 121219270 121219270 C T COL14A1 Silent p.A376A 0.43 TCGA-28-5220-01 8 56863056 56863056 A G LYN Missense_Mutation p.K108R 0.46 tolerated(0.14) benign(0.012) TCGA-28-5220-01 X 53432322 53432322 G T SMC1A Missense_Mutation p.T638K 0.89 deleterious(0) possibly_damaging(0.52) TCGA-28-5220-01 X 84347411 84347411 C G SATL1 3'UTR 0.15 TCGA-28-6450-01 10 16873370 16873370 C T CUBN Missense_Mutation p.C3470Y 0.50 deleterious(0) probably_damaging(1) TCGA-28-6450-01 10 23287264 23287264 G A ARMC3 Missense_Mutation p.V455M 0.30 deleterious(0) possibly_damaging(0.901) TCGA-28-6450-01 10 90695153 90695153 T C ACTA2 Intron 0.58 TCGA-28-6450-01 11 12261088 12261088 G A MICAL2 Missense_Mutation p.A724T 0.09 deleterious(0) probably_damaging(0.999) TCGA-28-6450-01 11 65267982 65267984 GTG - MALAT1 RNA 0.39 TCGA-28-6450-01 12 111742051 111742051 G A CUX2 Missense_Mutation p.R264Q 0.43 deleterious(0.02) possibly_damaging(0.866) TCGA-28-6450-01 12 21954093 21954093 G A ABCC9 Missense_Mutation p.T1512M 0.35 deleterious(0) benign(0.378) TCGA-28-6450-01 12 55758950 55758950 C T OR6C75 Missense_Mutation p.P19L 0.29 deleterious_low_confidence(0.01) benign(0.002) TCGA-28-6450-01 13 20399201 20399201 C T ZMYM5 Missense_Mutation p.G476S 0.15 tolerated_low_confidence(1) benign(0.001) TCGA-28-6450-01 13 46718596 46718596 G A LCP1 Nonsense_Mutation p.R412* 0.31 TCGA-28-6450-01 14 72943451 72943451 C G RGS6 Missense_Mutation p.S232C 0.30 deleterious(0.04) benign(0.178) TCGA-28-6450-01 15 55652658 55652658 A G CCPG1 Missense_Mutation p.L438P 0.37 deleterious(0) probably_damaging(1) TCGA-28-6450-01 15 89876416 89876416 G A POLG Silent p.P190P 0.38 TCGA-28-6450-01 16 1574572 1574572 T A IFT140 Missense_Mutation p.N1041I 0.34 deleterious(0) benign(0.201) TCGA-28-6450-01 16 30535896 30535896 A G ZNF768 Missense_Mutation p.F522S 0.23 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-28-6450-01 16 30535897 30535897 A C ZNF768 Missense_Mutation p.F522V 0.20 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-28-6450-01 16 30795519 30795519 T G ZNF629 Missense_Mutation p.I44L 0.28 tolerated_low_confidence(0.18) benign(0) TCGA-28-6450-01 16 81151072 81151072 G A PKD1L2 RNA 0.44 TCGA-28-6450-01 17 29527568 29527569 CT - NF1 Frame_Shift_Del p.S340Cfs*12 0.20 TCGA-28-6450-01 17 29684388 29684391 GTAA - NF1 Splice_Site p.X2657_splice 0.26 TCGA-28-6450-01 17 39550299 39550299 C T KRT31 Missense_Mutation p.R407H 0.24 tolerated(0.59) possibly_damaging(0.662) TCGA-28-6450-01 18 48450505 48450505 T G ME2 Missense_Mutation p.F365C 0.26 deleterious(0) probably_damaging(0.975) TCGA-28-6450-01 18 6985300 6985300 C T LAMA1 Missense_Mutation p.D1866N 0.27 tolerated(0.13) benign(0.033) TCGA-28-6450-01 19 34180166 34180166 G A CHST8 5'UTR 0.37 TCGA-28-6450-01 19 52472376 52472376 T C ZNF350 Missense_Mutation p.I8M 0.29 deleterious(0.02) benign(0.038) TCGA-28-6450-01 19 57327924 57327924 C G PEG3 Missense_Mutation p.C629S 0.23 tolerated(0.08) probably_damaging(0.988) TCGA-28-6450-01 19 57327945 57327945 C G PEG3 Missense_Mutation p.G622A 0.35 tolerated(0.55) benign(0.034) TCGA-28-6450-01 19 57328102 57328102 C G PEG3 Missense_Mutation p.E570Q 0.26 tolerated(0.05) benign(0.004) TCGA-28-6450-01 19 57328544 57328544 C G PEG3 Missense_Mutation p.M422I 0.30 tolerated(0.06) benign(0.071) TCGA-28-6450-01 1 11907662 11907662 G C NPPA Missense_Mutation p.P27R 0.07 deleterious(0) probably_damaging(0.999) TCGA-28-6450-01 1 11907712 11907712 G C NPPA Missense_Mutation p.S10R 0.06 tolerated(0.12) unknown(0) TCGA-28-6450-01 1 152285965 152285965 C A FLG Missense_Mutation p.G466V 0.34 probably_damaging(0.986) TCGA-28-6450-01 1 154293715 154293715 T C AQP10 Silent p.F28F 0.35 TCGA-28-6450-01 1 155058900 155058900 G A EFNA3 Missense_Mutation p.G200R 0.43 deleterious(0.01) benign(0.004) TCGA-28-6450-01 1 159043117 159043117 G A AIM2 Missense_Mutation p.A58V 0.38 tolerated(0.48) benign(0.001) TCGA-28-6450-01 1 182908331 182908331 C G SHCBP1L Missense_Mutation p.M352I 0.37 tolerated(0.63) benign(0.002) TCGA-28-6450-01 1 223285929 223285929 G A TLR5 Missense_Mutation p.R149C 0.28 tolerated(0.12) possibly_damaging(0.8) TCGA-28-6450-01 1 228486970 228486970 C G OBSCN Silent p.A4407A 0.23 TCGA-28-6450-01 1 228487084 228487084 C G OBSCN Silent p.L4445L 0.22 TCGA-28-6450-01 1 228487176 228487176 C G OBSCN Nonsense_Mutation p.S4476* 0.25 TCGA-28-6450-01 1 228487203 228487203 C G OBSCN Nonsense_Mutation p.S4485* 0.21 TCGA-28-6450-01 1 33583641 33583641 T A ADC Missense_Mutation p.Y390N 0.36 tolerated(0.06) probably_damaging(0.981) TCGA-28-6450-01 1 6705885 6705885 T C DNAJC11 Silent p.R286R 0.57 TCGA-28-6450-01 20 44669236 44669236 C T SLC12A5 Silent p.F302F 0.22 TCGA-28-6450-01 20 47734907 47734907 G - STAU1 Frame_Shift_Del p.F386Lfs*23 0.15 TCGA-28-6450-01 2 143713833 143713833 C A KYNU Missense_Mutation p.P166H 0.34 deleterious(0) probably_damaging(0.991) TCGA-28-6450-01 2 169728042 169728042 C T SPC25 Missense_Mutation p.E192K 0.40 deleterious(0.02) benign(0.056) TCGA-28-6450-01 2 170050292 170050292 C T LRP2 Missense_Mutation p.E2937K 0.36 probably_damaging(0.986) TCGA-28-6450-01 2 39088222 39088222 A - DHX57 Frame_Shift_Del p.S444Lfs*5 0.29 TCGA-28-6450-01 2 74902997 74902997 G A SEMA4F Missense_Mutation p.R535Q 0.41 tolerated(0.27) benign(0.015) TCGA-28-6450-01 3 127806571 127806571 T C RUVBL1 Missense_Mutation p.Y366C 0.46 deleterious(0) probably_damaging(1) TCGA-28-6450-01 3 178936094 178936094 C A PIK3CA Missense_Mutation p.Q546K 0.35 deleterious(0.03) probably_damaging(0.952) TCGA-28-6450-01 3 32180198 32180198 G A GPD1L Silent p.A115A 0.37 TCGA-28-6450-01 4 155527975 155527975 C A FGG Missense_Mutation p.Q337H 0.34 tolerated(0.38) benign(0.112) TCGA-28-6450-01 4 175160248 175160248 G C FBXO8 Silent p.A223A 0.26 TCGA-28-6450-01 4 2934851 2934851 C T MFSD10 Silent p.P118P 0.39 TCGA-28-6450-01 4 69798434 69798434 A G UGT2A3 Missense_Mutation p.V303A 0.29 deleterious(0) probably_damaging(0.955) TCGA-28-6450-01 4 82125748 82125748 C - PRKG2 Frame_Shift_Del p.D152Tfs*18 0.26 TCGA-28-6450-01 5 140214002 140214002 C T PCDHA7 Nonsense_Mutation p.R12* 0.33 TCGA-28-6450-01 5 140751755 140751755 G A PCDHGB3 Silent p.S598S 0.42 TCGA-28-6450-01 5 161999 161999 G T PLEKHG4B Missense_Mutation p.Q507H 0.37 tolerated(0.25) benign(0.438) TCGA-28-6450-01 5 45262526 45262526 C T HCN1 Missense_Mutation p.A724T 0.29 deleterious_low_confidence(0.04) probably_damaging(0.978) TCGA-28-6450-01 6 155743956 155743956 T A NOX3 Missense_Mutation p.T394S 0.40 tolerated(0.06) benign(0.087) TCGA-28-6450-01 6 155743957 155743957 C A NOX3 Silent p.L393L 0.41 TCGA-28-6450-01 6 28227813 28227813 A G NKAPL Missense_Mutation p.R222G 0.37 tolerated(0.09) unknown(0) TCGA-28-6450-01 6 33141808 33141808 G A COL11A2 Missense_Mutation p.R751W 0.33 possibly_damaging(0.835) TCGA-28-6450-01 8 39781104 39781104 C T IDO1 Silent p.H218H 0.23 TCGA-28-6450-01 9 132842036 132842036 C G GPR107 Missense_Mutation p.Q172E 0.39 tolerated(0.83) benign(0.002) TCGA-28-6450-01 9 32632187 32632187 T C TAF1L Missense_Mutation p.K1131E 0.39 deleterious(0) possibly_damaging(0.533) TCGA-28-6450-01 X 140967026 140967026 G A MAGEC3 Silent p.P108P 0.75 TCGA-28-6450-01 X 152612297 152612297 C T ZNF275 Missense_Mutation p.H52Y 0.69 tolerated(0.69) benign(0.099) TCGA-28-6450-01 X 153128302 153128302 C T L1CAM Missense_Mutation p.G1197E 0.61 tolerated(0.61) probably_damaging(0.992) TCGA-28-6450-01 X 41555067 41555067 T C GPR34 Missense_Mutation p.Y61H 0.75 deleterious(0) probably_damaging(0.992) TCGA-32-1970-01 10 7659109 7659109 G T ITIH5 Missense_Mutation p.D263E 0.77 deleterious(0) probably_damaging(0.995) TCGA-32-1970-01 10 96447617 96447617 C T CYP2C18 Silent p.L87L 0.75 TCGA-32-1970-01 11 107200691 107200691 C T CWF19L2 Missense_Mutation p.A832T 0.37 deleterious(0) probably_damaging(0.998) TCGA-32-1970-01 11 16007846 16007846 C T SOX6 Missense_Mutation p.R676H 0.20 deleterious(0) probably_damaging(0.999) TCGA-32-1970-01 11 18158842 18158842 G A MRGPRX3 Silent p.T31T 0.41 TCGA-32-1970-01 11 47360181 47360181 C T MYBPC3 Missense_Mutation p.R733H 0.45 tolerated(0.99) benign(0.007) TCGA-32-1970-01 11 48238965 48238965 G A OR4B1 Missense_Mutation p.G202R 0.44 deleterious(0.01) probably_damaging(1) TCGA-32-1970-01 11 57982381 57982381 C T OR1S1 Silent p.N55N 0.35 TCGA-32-1970-01 11 59837091 59837091 C T MS4A3 Silent p.C186C 0.36 TCGA-32-1970-01 11 67120265 67120265 G A POLD4 Missense_Mutation p.R66W 0.19 deleterious(0) probably_damaging(0.999) TCGA-32-1970-01 11 92714860 92714860 C A MTNR1B Silent p.T157T 0.33 TCGA-32-1970-01 12 125834519 125834519 G A TMEM132B Missense_Mutation p.E192K 0.33 deleterious(0.04) benign(0.176) TCGA-32-1970-01 12 50030600 50030600 C T PRPF40B Missense_Mutation p.R510C 0.35 deleterious(0) probably_damaging(0.996) TCGA-32-1970-01 12 54575756 54575756 G A SMUG1 3'UTR 0.57 TCGA-32-1970-01 12 57109669 57109670 - T NACA Frame_Shift_Ins p.T729Nfs*12 0.31 TCGA-32-1970-01 13 102375254 102375254 G A FGF14 Missense_Mutation p.T229M 0.44 tolerated(0.07) possibly_damaging(0.888) TCGA-32-1970-01 13 49039351 49039351 T A RB1 Nonsense_Mutation p.L779* 0.75 TCGA-32-1970-01 14 103371553 103371553 T C TRAF3 Missense_Mutation p.L380P 0.30 tolerated(0.19) benign(0.003) TCGA-32-1970-01 14 22217750 22217750 G A TRAV5 Missense_Mutation p.R34Q 0.29 tolerated(1) benign(0.001) TCGA-32-1970-01 14 22509139 22509139 C T TRAV20 Missense_Mutation p.T26M 0.31 tolerated(0.07) benign(0.009) TCGA-32-1970-01 14 24627141 24627141 C A RNF31 Missense_Mutation p.S921Y 0.08 deleterious(0.03) possibly_damaging(0.75) TCGA-32-1970-01 14 81329142 81329142 G A CEP128 Missense_Mutation p.R241C 0.37 deleterious(0) probably_damaging(0.975) TCGA-32-1970-01 14 86088466 86088466 T C FLRT2 Missense_Mutation p.L203P 0.34 deleterious(0) probably_damaging(0.992) TCGA-32-1970-01 15 45668979 45668979 G T GATM Missense_Mutation p.F36L 0.49 tolerated_low_confidence(0.33) benign(0.002) TCGA-32-1970-01 15 66191203 66191203 G T MEGF11 Missense_Mutation p.T946K 0.46 tolerated(0.14) benign(0.215) TCGA-32-1970-01 15 99512679 99512679 C T PGPEP1L Missense_Mutation p.V116M 0.44 deleterious(0.03) possibly_damaging(0.818) TCGA-32-1970-01 16 29979390 29979390 A G TMEM219 Missense_Mutation p.T134A 0.18 tolerated(0.28) benign(0.002) TCGA-32-1970-01 16 50707501 50707501 C T SNX20 Missense_Mutation p.R256H 0.46 tolerated(0.54) benign(0.002) TCGA-32-1970-01 16 57153520 57153520 C T CPNE2 Silent p.P213P 0.44 TCGA-32-1970-01 16 81181065 81181065 C T PKD1L2 RNA 0.47 TCGA-32-1970-01 17 19618087 19618087 C T SLC47A2 Missense_Mutation p.G81R 0.41 deleterious(0) probably_damaging(1) TCGA-32-1970-01 17 27228288 27228288 C T DHRS13 Silent p.A134A 0.36 TCGA-32-1970-01 17 63553948 63553948 G A AXIN2 Missense_Mutation p.T264M 0.46 tolerated(0.18) benign(0.01) TCGA-32-1970-01 17 7220634 7220634 G A NEURL4 Silent p.F1458F 0.88 TCGA-32-1970-01 17 7577138 7577138 C G TP53 Missense_Mutation p.R267P 0.86 deleterious(0) probably_damaging(0.997) TCGA-32-1970-01 19 14785604 14785604 C T EMR3 5'UTR 0.27 TCGA-32-1970-01 19 15291617 15291617 C T NOTCH3 Missense_Mutation p.R1006H 0.23 tolerated(0.06) benign(0.022) TCGA-32-1970-01 19 17000950 17000950 G A F2RL3 Missense_Mutation p.V226M 0.24 tolerated(0.15) benign(0.148) TCGA-32-1970-01 19 35849928 35849928 C T FFAR3 Missense_Mutation p.R46C 0.13 tolerated(0.17) benign(0.052) TCGA-32-1970-01 19 41889786 41889786 T C TMEM91 3'UTR 0.62 TCGA-32-1970-01 19 43690571 43690571 G A PSG5 5'UTR 0.24 TCGA-32-1970-01 19 44932920 44932920 G A ZNF229 Missense_Mutation p.T679M 0.43 deleterious(0.02) probably_damaging(0.999) TCGA-32-1970-01 1 12164492 12164492 C T TNFRSF8 Nonsense_Mutation p.R109* 0.48 TCGA-32-1970-01 1 152193260 152193260 C G HRNR Missense_Mutation p.S282T 0.43 unknown(0) TCGA-32-1970-01 1 197061071 197061071 G T ASPM Missense_Mutation p.A3137D 0.40 deleterious(0.03) probably_damaging(0.98) TCGA-32-1970-01 1 248039235 248039235 C T TRIM58 Missense_Mutation p.P302L 0.37 deleterious(0.02) probably_damaging(0.977) TCGA-32-1970-01 1 248224640 248224640 G T OR2L3 Silent p.R219R 0.27 TCGA-32-1970-01 1 248685400 248685400 C T OR2G6 Silent p.S151S 0.50 TCGA-32-1970-01 1 3732029 3732029 G C CEP104 Missense_Mutation p.S905R 0.33 deleterious(0) probably_damaging(0.956) TCGA-32-1970-01 1 44437537 44437537 G T DPH2 Silent p.R321R 0.26 TCGA-32-1970-01 1 79002163 79002163 C T PTGFR Nonsense_Mutation p.R291* 0.49 TCGA-32-1970-01 20 47887010 47887010 G A ZNFX1 Nonsense_Mutation p.R447* 0.19 TCGA-32-1970-01 20 62200284 62200284 G A HELZ2 Missense_Mutation p.A386V 0.34 deleterious(0.02) possibly_damaging(0.691) TCGA-32-1970-01 21 11015013 11015013 C T TPTE RNA 0.10 TCGA-32-1970-01 2 116497460 116497460 G A DPP10 Silent p.P285P 0.39 TCGA-32-1970-01 2 128939777 128939777 G T UGGT1 Missense_Mutation p.C1386F 0.42 deleterious(0) probably_damaging(0.999) TCGA-32-1970-01 2 163204170 163204170 G C GCA Missense_Mutation p.G37A 0.44 tolerated(0.13) benign(0.007) TCGA-32-1970-01 2 191765419 191765419 G A GLS Silent p.K245K 0.17 TCGA-32-1970-01 2 31484475 31484475 A T EHD3 Missense_Mutation p.N326Y 0.07 deleterious(0.04) benign(0.01) TCGA-32-1970-01 2 84517940 84517940 G A FUNDC2P2 RNA 0.33 TCGA-32-1970-01 3 111852081 111852081 G A GCSAM 5'UTR 0.49 TCGA-32-1970-01 3 120764376 120764376 G A STXBP5L Missense_Mutation p.R155Q 0.40 deleterious(0) benign(0.356) TCGA-32-1970-01 3 168833869 168833869 C T MECOM Silent p.S474S 0.51 TCGA-32-1970-01 3 195102729 195102729 A G ACAP2 Missense_Mutation p.M45T 0.44 deleterious(0) possibly_damaging(0.688) TCGA-32-1970-01 3 30032601 30032601 C G RBMS3 Missense_Mutation p.T403R 0.42 deleterious(0.03) benign(0.347) TCGA-32-1970-01 3 45942421 45942421 G A CCR9 Silent p.A47A 0.43 TCGA-32-1970-01 3 52540233 52540233 G A STAB1 Silent p.A599A 0.31 TCGA-32-1970-01 4 155487823 155487823 A T FGB Missense_Mutation p.K163N 0.05 tolerated(0.45) benign(0.05) TCGA-32-1970-01 4 8583361 8583361 G A GPR78 Missense_Mutation p.A218T 0.50 tolerated(0.13) benign(0.007) TCGA-32-1970-01 5 140176747 140176747 C T PCDHA2 Missense_Mutation p.A733V 0.41 tolerated_low_confidence(0.06) benign(0.004) TCGA-32-1970-01 5 140730079 140730079 C T PCDHGB1 Silent p.N84N 0.32 TCGA-32-1970-01 5 156592869 156592869 C T FAM71B Missense_Mutation p.R104Q 0.30 tolerated(0.88) benign(0.004) TCGA-32-1970-01 5 170725815 170725815 C T RANBP17 Missense_Mutation p.R1074C 0.40 deleterious(0.01) possibly_damaging(0.791) TCGA-32-1970-01 5 171299943 171299943 G A FBXW11 Missense_Mutation p.R404W 0.33 deleterious(0) probably_damaging(0.998) TCGA-32-1970-01 5 37167302 37167302 T A C5orf42 Missense_Mutation p.Q2416L 0.04 deleterious(0.01) possibly_damaging(0.818) TCGA-32-1970-01 5 40976859 40976859 G A C7 Silent p.P694P 0.47 TCGA-32-1970-01 5 56778318 56778318 C T ACTBL2 Missense_Mutation p.E73K 0.37 tolerated_low_confidence(0.06) possibly_damaging(0.585) TCGA-32-1970-01 6 136597406 136597406 C A BCLAF1 Missense_Mutation p.Q419H 0.14 deleterious(0) benign(0.387) TCGA-32-1970-01 7 142611855 142611855 G A TRPV5 Missense_Mutation p.R492C 0.05 deleterious(0) probably_damaging(0.988) TCGA-32-1970-01 7 40127783 40127783 C T CDK13 Nonsense_Mutation p.Q1030* 0.23 TCGA-32-1970-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.54 deleterious(0.02) probably_damaging(0.974) TCGA-32-1970-01 7 56088826 56088826 C G PSPH Missense_Mutation p.R27T 0.32 tolerated(0.6) benign(0.029) TCGA-32-1970-01 7 5963537 5963537 G A CCZ1 Missense_Mutation p.R446Q 0.11 tolerated(1) benign(0.001) TCGA-32-1970-01 7 64167281 64167281 C A ZNF107 Missense_Mutation p.A200D 0.26 tolerated(0.11) benign(0.104) TCGA-32-1970-01 7 77807399 77807399 C T MAGI2 Missense_Mutation p.D778N 0.22 deleterious(0) possibly_damaging(0.848) TCGA-32-1970-01 7 82582560 82582560 G A PCLO Missense_Mutation p.P2570L 0.22 unknown(0) TCGA-32-1970-01 7 86416220 86416220 G A GRM3 Missense_Mutation p.R371H 0.21 deleterious(0.03) benign(0.005) TCGA-32-1970-01 7 86416334 86416334 G A GRM3 Missense_Mutation p.R409H 0.26 tolerated(0.09) benign(0.007) TCGA-32-1970-01 7 86468918 86468918 C T GRM3 Silent p.I696I 0.06 TCGA-32-1970-01 7 89791325 89791325 T C STEAP1 Missense_Mutation p.L232P 0.23 deleterious(0) probably_damaging(0.984) TCGA-32-1970-01 8 11607623 11607623 G A GATA4 Missense_Mutation p.A263T 0.04 tolerated(0.17) benign(0.087) TCGA-32-1970-01 8 120629759 120629759 C T ENPP2 Missense_Mutation p.R175H 0.45 deleterious(0) probably_damaging(0.996) TCGA-32-1970-01 8 143625027 143625027 C T BAI1 Silent p.H1505H 0.67 TCGA-32-1970-01 8 41530119 41530127 AGCCCAACT - ANK1 In_Frame_Del p.E1655_S1658delinsA 0.27 TCGA-32-1970-01 9 107379553 107379553 C T OR13C9 Silent p.P311P 0.31 TCGA-32-1970-01 9 134350722 134350722 G A PRRC2B Missense_Mutation p.R1069H 0.23 deleterious(0.01) benign(0.052) TCGA-32-1970-01 9 135945963 135945963 G A CEL Missense_Mutation p.A471T 0.10 tolerated(0.21) benign(0.091) TCGA-32-1970-01 X 13624543 13624543 G A EGFL6 Missense_Mutation p.R189Q 0.89 deleterious(0) probably_damaging(0.999) TCGA-32-1977-01 10 100374687 100374687 C T HPSE2 Missense_Mutation p.V432M 0.05 deleterious(0.02) possibly_damaging(0.748) TCGA-32-1977-01 10 101716779 101716779 C T DNMBP Missense_Mutation p.R151Q 0.35 deleterious(0.02) probably_damaging(0.988) TCGA-32-1977-01 10 50820049 50820049 C T SLC18A3 Silent p.Y421Y 0.29 TCGA-32-1977-01 10 89653808 89653808 G A PTEN Missense_Mutation p.G36R 0.24 deleterious(0.04) possibly_damaging(0.813) TCGA-32-1977-01 11 18587922 18587922 C G UEVLD Missense_Mutation p.L155F 0.21 tolerated(0.08) possibly_damaging(0.585) TCGA-32-1977-01 11 4842972 4842972 C T OR51F2 Silent p.H119H 0.19 TCGA-32-1977-01 11 55735344 55735344 G A OR10AG1 Missense_Mutation p.T199M 0.05 tolerated(1) benign(0.025) TCGA-32-1977-01 11 64820765 64820765 C T NAALADL1 Missense_Mutation p.G375R 0.25 deleterious(0) probably_damaging(0.996) TCGA-32-1977-01 11 65402835 65402835 G A PCNXL3 Silent p.A1700A 0.20 TCGA-32-1977-01 12 111087206 111087206 G C HVCN1 3'UTR 0.07 TCGA-32-1977-01 12 113770568 113770568 T A SLC8B1 Missense_Mutation p.Q39L 0.26 tolerated_low_confidence(0.3) benign(0.002) TCGA-32-1977-01 12 114832695 114832695 T A TBX5 Missense_Mutation p.I172F 0.22 deleterious(0) probably_damaging(0.931) TCGA-32-1977-01 12 118639103 118639103 C - TAOK3 Frame_Shift_Del p.E329Kfs*9 0.19 TCGA-32-1977-01 12 120941504 120941504 T C COQ5 3'UTR 0.09 TCGA-32-1977-01 12 46245949 46245949 A T ARID2 Missense_Mutation p.D1348V 0.25 deleterious_low_confidence(0.02) benign(0.013) TCGA-32-1977-01 12 53242331 53242331 C T KRT78 Silent p.K128K 0.14 TCGA-32-1977-01 12 7842931 7842931 C T GDF3 Missense_Mutation p.G213E 0.26 tolerated(0.48) benign(0.025) TCGA-32-1977-01 12 98926950 98926950 C T TMPO Silent p.V305V 0.24 TCGA-32-1977-01 13 76134909 76134909 A T UCHL3 Silent p.L25L 0.21 TCGA-32-1977-01 14 104488645 104488645 G A TDRD9 Missense_Mutation p.V862I 0.19 tolerated(0.59) benign(0.002) TCGA-32-1977-01 14 105397140 105397140 C T PLD4 Missense_Mutation p.T260I 0.22 tolerated(0.93) benign(0.075) TCGA-32-1977-01 14 105518239 105518239 C T GPR132 Missense_Mutation p.V79I 0.20 tolerated(0.6) possibly_damaging(0.462) TCGA-32-1977-01 14 19553823 19553823 G A POTEG Missense_Mutation p.R136H 0.08 tolerated(0.12) benign(0.003) TCGA-32-1977-01 14 21679524 21679524 C T HNRNPC Intron 0.12 TCGA-32-1977-01 14 23239044 23239044 G A OXA1L Missense_Mutation p.G222S 0.17 tolerated(0.18) benign(0.12) TCGA-32-1977-01 14 24777025 24777025 T A CIDEB Missense_Mutation p.R14W 0.14 deleterious(0) probably_damaging(0.98) TCGA-32-1977-01 14 29237322 29237322 C T FOXG1 Silent p.T279T 0.26 TCGA-32-1977-01 15 42442026 42442026 C T PLA2G4F Missense_Mutation p.R315H 0.08 deleterious(0) probably_damaging(0.97) TCGA-32-1977-01 15 63055766 63055766 A C TLN2 Missense_Mutation p.K1656Q 0.21 tolerated(0.08) benign(0.021) TCGA-32-1977-01 15 74005348 74005348 C A CD276 3'UTR 0.09 TCGA-32-1977-01 15 75503308 75503308 G A C15orf39 Missense_Mutation p.G999S 0.11 tolerated_low_confidence(0.31) benign(0.425) TCGA-32-1977-01 15 76496348 76496348 C T C15orf27 Missense_Mutation p.P430S 0.24 tolerated_low_confidence(0.31) benign(0.116) TCGA-32-1977-01 16 1841525 1841525 G A IGFALS Silent p.S336S 0.36 TCGA-32-1977-01 16 21045351 21045351 G A DNAH3 Silent p.G1714G 0.26 TCGA-32-1977-01 16 24835155 24835155 G A TNRC6A 3'UTR 0.25 TCGA-32-1977-01 16 2903295 2903295 G A PRSS22 Silent p.D251D 0.17 TCGA-32-1977-01 16 31427865 31427865 C T ITGAD Silent p.N799N 0.23 TCGA-32-1977-01 16 460737 460737 G A DECR2 Missense_Mutation p.R170Q 0.21 tolerated(0.07) benign(0.298) TCGA-32-1977-01 17 3417750 3417750 G C TRPV3 Intron 0.25 TCGA-32-1977-01 17 51901070 51901070 C T KIF2B Nonsense_Mutation p.R226* 0.21 TCGA-32-1977-01 17 60879073 60879073 C A MARCH10 Missense_Mutation p.R8S 0.22 deleterious(0) probably_damaging(0.999) TCGA-32-1977-01 17 62856062 62856062 A C LRRC37A3 Missense_Mutation p.V1401G 0.24 deleterious(0.01) benign(0.005) TCGA-32-1977-01 17 65119252 65119252 A G HELZ Missense_Mutation p.I1155T 0.30 deleterious_low_confidence(0.01) benign(0.428) TCGA-32-1977-01 17 73518046 73518046 G A TSEN54 Missense_Mutation p.R295H 0.17 tolerated(0.12) possibly_damaging(0.891) TCGA-32-1977-01 17 77758656 77758656 G A CBX2 Missense_Mutation p.D472N 0.14 deleterious(0.02) possibly_damaging(0.642) TCGA-32-1977-01 18 14478397 14478397 C T CXADRP3 RNA 0.21 TCGA-32-1977-01 18 66504203 66504204 - TAT CCDC102B In_Frame_Ins p.I69dup 0.24 TCGA-32-1977-01 19 12817567 12817567 G T TNPO2 Missense_Mutation p.P438Q 0.09 deleterious(0) possibly_damaging(0.851) TCGA-32-1977-01 19 22363820 22363820 A T ZNF676 Silent p.A233A 0.12 TCGA-32-1977-01 19 43373185 43373185 C T PSG1 Silent p.P237P 0.14 TCGA-32-1977-01 19 52918709 52918709 A C ZNF528 Missense_Mutation p.T202P 0.10 tolerated(0.16) benign(0.002) TCGA-32-1977-01 19 54314485 54314485 C T NLRP12 Missense_Mutation p.R143H 0.13 deleterious(0) probably_damaging(0.999) TCGA-32-1977-01 19 7963647 7963647 G T LRRC8E Missense_Mutation p.Q80H 0.19 tolerated(0.13) benign(0) TCGA-32-1977-01 1 119441665 119441665 A G TBX15 Missense_Mutation p.M231T 0.22 tolerated(0.13) benign(0.071) TCGA-32-1977-01 1 149885276 149885276 G A SV2A Silent p.D39D 0.24 TCGA-32-1977-01 1 150039812 150039812 C - VPS45 5'UTR 0.18 TCGA-32-1977-01 1 152283084 152283084 G A FLG Silent p.S1426S 0.21 TCGA-32-1977-01 1 207071109 207071109 C T IL24 5'UTR 0.21 TCGA-32-1977-01 1 248616677 248616677 G A OR2T2 Silent p.T193T 0.36 TCGA-32-1977-01 1 41107474 41107474 C T RIMS3 Missense_Mutation p.A42T 0.30 tolerated_low_confidence(1) benign(0.012) TCGA-32-1977-01 1 44069550 44069550 G A PTPRF Silent p.R909R 0.24 TCGA-32-1977-01 1 68603590 68603590 G A WLS Silent p.G461G 0.13 TCGA-32-1977-01 1 909247 909247 C T PLEKHN1 Missense_Mutation p.T490M 0.20 tolerated(0.05) benign(0.008) TCGA-32-1977-01 21 45786765 45786765 G A TRPM2 Silent p.P184P 0.23 TCGA-32-1977-01 22 21343151 21343151 G A LZTR1 Missense_Mutation p.G195S 0.20 deleterious(0) probably_damaging(1) TCGA-32-1977-01 2 11587770 11587770 G A E2F6 Missense_Mutation p.P261L 0.19 tolerated(0.08) unknown(0) TCGA-32-1977-01 2 136627932 136627932 C G MCM6 Splice_Site p.X85_splice 0.28 TCGA-32-1977-01 2 158412763 158412763 G A ACVR1C Missense_Mutation p.A129V 0.21 tolerated(0.71) benign(0.001) TCGA-32-1977-01 2 163070563 163070563 A T FAP Missense_Mutation p.L296H 0.25 deleterious(0) probably_damaging(0.99) TCGA-32-1977-01 2 170115593 170115593 G A LRP2 Missense_Mutation p.R819C 0.06 probably_damaging(0.991) TCGA-32-1977-01 2 217234856 217234856 C T MARCH4 Missense_Mutation p.R43H 0.24 tolerated_low_confidence(0.06) probably_damaging(0.964) TCGA-32-1977-01 2 233194556 233194556 G C DIS3L2 Missense_Mutation p.M591I 0.09 tolerated(0.18) benign(0.07) TCGA-32-1977-01 2 39509673 39509673 G A MAP4K3 Missense_Mutation p.P537L 0.14 deleterious(0) probably_damaging(0.999) TCGA-32-1977-01 3 118865302 118865302 G A C3orf30 Missense_Mutation p.R89H 0.29 tolerated(0.17) benign(0.001) TCGA-32-1977-01 3 136048975 136048975 C G PCCB 3'UTR 0.24 TCGA-32-1977-01 3 161221595 161221595 G C OTOL1 Missense_Mutation p.L433F 0.27 deleterious(0) probably_damaging(0.999) TCGA-32-1977-01 3 189604307 189604307 C T TP63 Missense_Mutation p.P492S 0.19 deleterious(0.04) possibly_damaging(0.617) TCGA-32-1977-01 3 53891662 53891662 C T IL17RB Missense_Mutation p.T231M 0.23 tolerated(0.05) benign(0.066) TCGA-32-1977-01 3 61975388 61975388 C T PTPRG Missense_Mutation p.R94C 0.21 deleterious(0) possibly_damaging(0.72) TCGA-32-1977-01 3 9876867 9876878 CGGAAGGTCAAG TGGAATA TTLL3 Frame_Shift_Del p.R816Ifs*11 0.19 TCGA-32-1977-01 4 1019042 1019042 C T FGFRL1 Silent p.L474L 0.24 TCGA-32-1977-01 4 30725505 30725505 G - PCDH7 Frame_Shift_Del p.V821* 0.20 TCGA-32-1977-01 4 70160416 70160416 G T UGT2B28 Silent p.V493V 0.18 TCGA-32-1977-01 4 76836138 76836138 G A NAAA Silent p.N333N 0.20 TCGA-32-1977-01 4 77661454 77661454 C A SHROOM3 Missense_Mutation p.P710T 0.27 tolerated(0.33) benign(0.058) TCGA-32-1977-01 5 1201746 1201746 G A SLC6A19 5'UTR 0.22 TCGA-32-1977-01 5 128359401 128359401 A G SLC27A6 Missense_Mutation p.K418R 0.21 tolerated(0.14) benign(0.057) TCGA-32-1977-01 5 89821101 89821101 T C LYSMD3 Silent p.A2A 0.13 TCGA-32-1977-01 5 93859726 93859726 T G KIAA0825 Missense_Mutation p.D70A 0.32 deleterious(0) probably_damaging(1) TCGA-32-1977-01 6 100957128 100957128 C T ASCC3 3'UTR 0.22 TCGA-32-1977-01 6 116442546 116442546 G T COL10A1 Missense_Mutation p.P245T 0.23 tolerated(0.48) unknown(0) TCGA-32-1977-01 6 22569687 22569687 G A HDGFL1 5'Flank 0.56 TCGA-32-1977-01 6 33382871 33382871 C - PHF1 Frame_Shift_Del p.E398Sfs*96 0.28 TCGA-32-1977-01 6 35261624 35261624 G A ZNF76 Missense_Mutation p.A476T 0.19 tolerated(0.48) benign(0.013) TCGA-32-1977-01 7 134346605 134346605 A T BPGM Nonsense_Mutation p.R116* 0.28 TCGA-32-1977-01 7 147336290 147336290 G A CNTNAP2 Missense_Mutation p.V664I 0.21 tolerated(0.12) benign(0) TCGA-32-1977-01 7 30695576 30695576 C T CRHR2 Missense_Mutation p.R322H 0.17 deleterious(0.04) probably_damaging(0.924) TCGA-32-1977-01 7 74004217 74004217 C T GTF2IRD1 Silent p.I818I 0.10 TCGA-32-1977-01 8 26510765 26510765 G A DPYSL2 Silent p.G493G 0.22 TCGA-32-1977-01 9 136338317 136338317 G A SLC2A6 Silent p.P426P 0.19 TCGA-32-1977-01 9 26984346 26984346 G C IFT74 Missense_Mutation p.E133Q 0.06 tolerated(0.05) possibly_damaging(0.624) TCGA-32-1977-01 X 109416722 109416722 C A TMEM164 3'UTR 0.07 TCGA-32-1977-01 X 37955451 37955451 C T SYTL5 Silent p.S342S 0.40 TCGA-32-1979-01 10 43606701 43606701 A T RET Missense_Mutation p.N437I 0.50 tolerated(0.2) benign(0.064) TCGA-32-1979-01 11 108352840 108352840 G C KDELC2 Missense_Mutation p.S265C 0.35 deleterious(0.02) probably_damaging(0.984) TCGA-32-1979-01 11 118085599 118085599 A T AMICA1 Intron 0.28 TCGA-32-1979-01 11 1956149 1956149 C T TNNT3 Silent p.D227D 0.04 TCGA-32-1979-01 11 20648387 20648387 C T SLC6A5 Missense_Mutation p.T465M 0.05 tolerated(0.29) benign(0.028) TCGA-32-1979-01 11 294169 294169 C T ATHL1 Missense_Mutation p.A594V 0.35 deleterious(0.05) possibly_damaging(0.788) TCGA-32-1979-01 11 45671489 45671489 C T CHST1 Missense_Mutation p.A329T 0.31 tolerated(0.17) benign(0.069) TCGA-32-1979-01 11 46914582 46914582 C T LRP4 Missense_Mutation p.V547M 0.29 deleterious(0) probably_damaging(0.975) TCGA-32-1979-01 11 59629106 59629106 G C TCN1 Missense_Mutation p.D150E 0.27 deleterious(0.02) possibly_damaging(0.844) TCGA-32-1979-01 12 100787226 100787226 G A SLC17A8 Missense_Mutation p.V185I 0.45 deleterious(0.03) probably_damaging(0.998) TCGA-32-1979-01 12 15261960 15261960 A G RERG 3'UTR 0.33 TCGA-32-1979-01 12 38714180 38714180 G A ALG10B Missense_Mutation p.C196Y 0.22 tolerated(0.07) possibly_damaging(0.566) TCGA-32-1979-01 12 57442017 57442017 G A MYO1A Missense_Mutation p.R31C 0.49 deleterious(0) probably_damaging(1) TCGA-32-1979-01 14 104639702 104639702 C T KIF26A Silent p.A573A 0.30 TCGA-32-1979-01 14 38724727 38724727 G A CLEC14A Silent p.N167N 0.32 TCGA-32-1979-01 14 50626273 50626273 T C SOS2 Silent p.V576V 0.31 TCGA-32-1979-01 14 81223256 81223256 G A CEP128 Missense_Mutation p.R865C 0.30 deleterious(0.02) probably_damaging(0.997) TCGA-32-1979-01 15 21071285 21071285 G T POTEB2 Missense_Mutation p.A109D 0.11 deleterious(0) probably_damaging(0.991) TCGA-32-1979-01 15 84237359 84237359 C T SH3GL3 Missense_Mutation p.T89M 0.25 deleterious(0) probably_damaging(0.994) TCGA-32-1979-01 15 91483616 91483616 G C UNC45A Missense_Mutation p.L200F 0.35 deleterious(0.05) probably_damaging(0.963) TCGA-32-1979-01 16 29884701 29884701 G A SEZ6L2 Missense_Mutation p.T783M 0.31 deleterious(0.01) probably_damaging(0.909) TCGA-32-1979-01 17 10406199 10406199 C A MYH1 Silent p.L989L 0.33 TCGA-32-1979-01 17 33767745 33767745 G A SLFN13 Missense_Mutation p.R855W 0.36 deleterious(0.05) benign(0.28) TCGA-32-1979-01 17 39190659 39190659 C T KRTAP1-3 Missense_Mutation p.A139T 0.38 deleterious(0.01) possibly_damaging(0.695) TCGA-32-1979-01 17 56247206 56247206 C T OR4D2 Nonsense_Mutation p.R64* 0.37 TCGA-32-1979-01 18 13826447 13826447 C T MC5R Missense_Mutation p.A228V 0.33 tolerated(1) benign(0.001) TCGA-32-1979-01 18 5395100 5395100 A G EPB41L3 Missense_Mutation p.V1040A 0.17 deleterious(0) probably_damaging(0.999) TCGA-32-1979-01 18 64218345 64218345 G A CDH19 Missense_Mutation p.P254L 0.44 deleterious(0) probably_damaging(0.999) TCGA-32-1979-01 19 13189498 13189498 C T NFIX Missense_Mutation p.R343C 0.33 deleterious(0) possibly_damaging(0.888) TCGA-32-1979-01 19 15648390 15648390 C T CYP4F22 Missense_Mutation p.R156C 0.12 deleterious(0) probably_damaging(0.999) TCGA-32-1979-01 19 18968250 18968250 G A UPF1 Missense_Mutation p.R697H 0.27 deleterious(0) probably_damaging(0.989) TCGA-32-1979-01 19 19758484 19758484 C - ATP13A1 Frame_Shift_Del p.G906Afs*29 0.45 TCGA-32-1979-01 19 22363727 22363727 G A ZNF676 Silent p.S264S 0.17 TCGA-32-1979-01 19 35719014 35719014 G A FAM187B Silent p.S190S 0.30 TCGA-32-1979-01 19 39051893 39051893 C T RYR1 Silent p.N4141N 0.28 TCGA-32-1979-01 19 41512823 41512823 C T CYP2B6 Silent p.D166D 0.07 TCGA-32-1979-01 19 50812362 50812362 G A MYH14 Missense_Mutation p.R1963H 0.05 deleterious(0.03) benign(0.069) TCGA-32-1979-01 19 58579130 58579130 C T ZNF135 Silent p.T450T 0.20 TCGA-32-1979-01 1 150241179 150241179 A G APH1A Missense_Mutation p.F11S 0.60 deleterious(0.02) possibly_damaging(0.69) TCGA-32-1979-01 1 158746549 158746549 G A OR6N2 Missense_Mutation p.R293C 0.27 deleterious(0) benign(0.273) TCGA-32-1979-01 1 178514898 178514898 G A C1ORF220 Missense_Mutation p.R95H 0.25 benign(0) TCGA-32-1979-01 1 200842843 200842843 G A GPR25 Silent p.S226S 0.38 TCGA-32-1979-01 1 221879666 221879666 C G DUSP10 Missense_Mutation p.E318D 0.06 tolerated(0.28) benign(0.027) TCGA-32-1979-01 1 24669384 24669384 G A GRHL3 Missense_Mutation p.V430I 0.31 tolerated(0.43) benign(0.002) TCGA-32-1979-01 1 29069013 29069013 G A YTHDF2 Silent p.T77T 0.30 TCGA-32-1979-01 1 92445139 92445139 C T BRDT Missense_Mutation p.T371M 0.34 tolerated(1) benign(0.003) TCGA-32-1979-01 20 33880014 33880014 G A FAM83C Missense_Mutation p.R32W 0.35 deleterious(0) probably_damaging(1) TCGA-32-1979-01 20 43052742 43052742 G A HNF4A Missense_Mutation p.R326H 0.30 deleterious(0.04) probably_damaging(0.998) TCGA-32-1979-01 20 43837052 43837052 C T SEMG1 Missense_Mutation p.R372C 0.29 deleterious(0.01) benign(0.018) TCGA-32-1979-01 20 944738 944738 G A RSPO4 Silent p.G145G 0.19 TCGA-32-1979-01 21 37442646 37442646 G A CBR1 Missense_Mutation p.R78H 0.09 tolerated(0.05) benign(0.008) TCGA-32-1979-01 21 43161157 43161157 G A RIPK4 Silent p.D732D 0.16 TCGA-32-1979-01 21 47738114 47738114 C A C21orf58 Missense_Mutation p.A41S 0.30 tolerated_low_confidence(0.53) possibly_damaging(0.567) TCGA-32-1979-01 22 22300434 22300434 C T PPM1F 5'UTR 0.09 TCGA-32-1979-01 2 160241783 160241783 T C BAZ2B Missense_Mutation p.Q1190R 0.21 possibly_damaging(0.468) TCGA-32-1979-01 2 21233457 21233457 C T APOB Missense_Mutation p.V2095I 0.38 benign(0) TCGA-32-1979-01 2 219103491 219103492 TT - ARPC2 Frame_Shift_Del p.F125* 0.26 TCGA-32-1979-01 2 85828199 85828199 C G TMEM150A Missense_Mutation p.A49P 0.05 tolerated(0.37) benign(0.006) TCGA-32-1979-01 3 151475339 151475339 G A AADACL2 Missense_Mutation p.R388K 0.20 tolerated(0.19) benign(0.007) TCGA-32-1979-01 3 178952152 178952152 A G PIK3CA Nonstop_Mutation p.*1069Wext*4 0.32 TCGA-32-1979-01 3 57493505 57493505 G A DNAH12 Silent p.N254N 0.33 TCGA-32-1979-01 4 118005491 118005491 T G TRAM1L1 Missense_Mutation p.E353D 0.33 tolerated(0.6) benign(0.002) TCGA-32-1979-01 4 164394680 164394680 G A TKTL2 Silent p.N69N 0.28 TCGA-32-1979-01 4 46043099 46043099 C T GABRG1 Missense_Mutation p.R435H 0.41 tolerated(0.86) benign(0.014) TCGA-32-1979-01 4 48536560 48536560 A C FRYL Splice_Site p.X2235_splice 0.31 TCGA-32-1979-01 4 70160487 70160487 G A UGT2B28 Nonsense_Mutation p.W517* 0.39 TCGA-32-1979-01 4 73959897 73959897 T C ANKRD17 Silent p.G1742G 0.32 TCGA-32-1979-01 5 131544873 131544873 C T P4HA2 Silent p.R287R 0.28 TCGA-32-1979-01 5 141336339 141336339 G C PCDH12 Missense_Mutation p.P360A 0.27 tolerated(0.82) benign(0.003) TCGA-32-1979-01 5 149265912 149265912 G A PDE6A Missense_Mutation p.T585M 0.21 deleterious(0) probably_damaging(0.998) TCGA-32-1979-01 5 156590194 156590194 G A FAM71B Missense_Mutation p.A361V 0.33 tolerated(0.26) benign(0.026) TCGA-32-1979-01 5 160721114 160721114 C T GABRB2 Missense_Mutation p.V505I 0.25 tolerated(0.58) benign(0.044) TCGA-32-1979-01 5 2749815 2749815 G A IRX2 Silent p.L112L 0.24 TCGA-32-1979-01 5 36036029 36036029 G A UGT3A2 Missense_Mutation p.P448L 0.24 deleterious(0) probably_damaging(1) TCGA-32-1979-01 5 45303809 45303809 G A HCN1 Nonsense_Mutation p.R504* 0.24 TCGA-32-1979-01 6 138531138 138531138 C T KIAA1244 Missense_Mutation p.T104M 0.42 tolerated(0.47) probably_damaging(0.997) TCGA-32-1979-01 6 160501272 160501272 A G IGF2R Missense_Mutation p.Y1933C 0.30 deleterious(0) probably_damaging(0.998) TCGA-32-1979-01 6 35280250 35280250 C T DEF6 Missense_Mutation p.R199W 0.36 deleterious(0.01) possibly_damaging(0.613) TCGA-32-1979-01 6 39877612 39877612 C T MOCS1 Missense_Mutation p.A357T 0.34 tolerated(0.13) possibly_damaging(0.543) TCGA-32-1979-01 7 12683930 12683930 C T SCIN Silent p.G583G 0.30 TCGA-32-1979-01 7 142749461 142749461 C T OR6V1 Silent p.S8S 0.27 TCGA-32-1979-01 7 147259237 147259237 C T CNTNAP2 Silent p.Y595Y 0.19 TCGA-32-1979-01 7 1527392 1527392 G A INTS1 Intron 0.23 TCGA-32-1979-01 7 50467929 50467929 G A IKZF1 Silent p.A346A 0.27 TCGA-32-1979-01 7 55221765 55221765 A G EGFR Missense_Mutation p.Y270C 0.07 deleterious(0) probably_damaging(1) TCGA-32-1979-01 7 99565820 99565820 G A AZGP1 Missense_Mutation p.R191W 0.25 deleterious(0) possibly_damaging(0.686) TCGA-32-1979-01 8 107722899 107722899 G T OXR1 Missense_Mutation p.L559F 0.19 deleterious(0) probably_damaging(0.999) TCGA-32-1979-01 8 134488106 134488106 G C ST3GAL1 Missense_Mutation p.I54M 0.26 benign(0.002) TCGA-32-1979-01 8 48805878 48805878 G A PRKDC Missense_Mutation p.T1223I 0.26 benign(0.001) TCGA-32-1979-01 8 57353950 57353950 G A PENK Missense_Mutation p.R229W 0.31 deleterious(0) probably_damaging(0.998) TCGA-32-1979-01 9 116136378 116136378 G A HDHD3 Missense_Mutation p.A86V 0.06 deleterious(0.01) possibly_damaging(0.782) TCGA-32-1979-01 9 130272452 130272452 G A FAM129B Silent p.N378N 0.43 TCGA-32-1979-01 9 140173549 140173549 C T TOR4A Silent p.N136N 0.55 TCGA-32-1979-01 9 16436735 16436735 C T BNC2 Missense_Mutation p.R486H 0.56 deleterious(0) probably_damaging(0.999) TCGA-32-1979-01 9 86559803 86559803 A T C9orf64 Missense_Mutation p.S233R 0.31 tolerated(0.27) benign(0.035) TCGA-32-1979-01 X 107431199 107431199 A T COL4A6 Missense_Mutation p.L550H 0.10 probably_damaging(0.99) TCGA-32-1979-01 X 125685359 125685359 G A DCAF12L1 Silent p.L411L 0.34 TCGA-32-1979-01 X 70469493 70469493 G T ZMYM3 Silent p.R430R 0.26 TCGA-32-1980-01 11 118461139 118461139 T A ARCN1 Missense_Mutation p.I301N 0.05 deleterious(0) possibly_damaging(0.863) TCGA-32-1980-01 11 63273794 63273794 C T LGALS12 5'Flank 0.16 TCGA-32-1980-01 12 39716483 39716483 T C KIF21A Missense_Mutation p.K1220E 0.07 tolerated(0.14) benign(0.284) TCGA-32-1980-01 13 113803697 113803697 C T F10 Missense_Mutation p.R445C 0.11 deleterious(0) probably_damaging(0.972) TCGA-32-1980-01 14 35182132 35182132 G A CFL2 Missense_Mutation p.S147L 0.11 tolerated(0.4) benign(0.016) TCGA-32-1980-01 17 29663349 29663349 A G NF1 Splice_Site p.X2003_splice 0.09 TCGA-32-1980-01 19 56379119 56379119 C T NLRP4 Missense_Mutation p.A744V 0.08 tolerated(0.07) possibly_damaging(0.53) TCGA-32-1980-01 19 9075072 9075072 G A MUC16 Missense_Mutation p.T4125M 0.06 unknown(0) TCGA-32-1980-01 1 215820917 215820917 T C USH2A Missense_Mutation p.N4913S 0.06 probably_damaging(0.913) TCGA-32-1980-01 1 222761835 222761835 C G TAF1A Missense_Mutation p.S24T 0.07 tolerated(0.25) benign(0.052) TCGA-32-1980-01 21 47845820 47845820 G A PCNT Missense_Mutation p.E2419K 0.03 possibly_damaging(0.651) TCGA-32-1980-01 2 179640164 179640164 C G TTN Missense_Mutation p.A2143P 0.11 TCGA-32-1980-01 3 187447774 187447774 C T BCL6 Missense_Mutation p.R140H 0.05 deleterious(0.03) probably_damaging(0.98) TCGA-32-1980-01 4 126337603 126337603 G A FAT4 Missense_Mutation p.V2282M 0.11 probably_damaging(0.997) TCGA-32-1980-01 4 57777086 57777086 A G REST Silent p.E94E 0.06 TCGA-32-1980-01 4 88415064 88415064 T C SPARCL1 Silent p.Q296Q 0.03 TCGA-32-1980-01 6 18122155 18122155 C T NHLRC1 Missense_Mutation p.G228E 0.12 tolerated(1) benign(0) TCGA-32-1980-01 7 141619469 141619469 C T OR9A4 Missense_Mutation p.T265M 0.12 tolerated(0.06) possibly_damaging(0.532) TCGA-32-1980-01 8 94808163 94808163 C A TMEM67 Missense_Mutation p.P603Q 0.05 deleterious(0.01) benign(0.054) TCGA-32-1980-01 9 99581330 99581330 G C ZNF782 Silent p.L325L 0.12 TCGA-32-1980-01 X 151304140 151304140 C T MAGEA10 5'UTR 0.14 TCGA-32-1982-01 10 24874106 24874106 G A ARHGAP21 Silent p.S1704S 0.05 TCGA-32-1982-01 10 35299303 35299303 A T CUL2 Missense_Mutation p.L744Q 0.51 deleterious(0) probably_damaging(0.999) TCGA-32-1982-01 10 38404217 38404217 G T ZNF37A Silent p.L79L 0.45 TCGA-32-1982-01 10 48739411 48739411 G A PTPN20B Missense_Mutation p.R392C 0.39 deleterious(0) probably_damaging(1) TCGA-32-1982-01 10 50870733 50870733 C T CHAT Missense_Mutation p.R628W 0.42 deleterious(0) probably_damaging(0.998) TCGA-32-1982-01 10 89692829 89692829 T C PTEN Missense_Mutation p.C105R 0.06 deleterious(0) probably_damaging(0.997) TCGA-32-1982-01 11 18231471 18231471 G A RP11-113D6.10 Missense_Mutation p.R86Q 0.40 tolerated(0.27) benign(0.313) TCGA-32-1982-01 11 56020589 56020589 C T OR5T3 Missense_Mutation p.S305L 0.19 deleterious(0) possibly_damaging(0.739) TCGA-32-1982-01 12 40689281 40689281 G A LRRK2 Silent p.L977L 0.22 TCGA-32-1982-01 12 5724431 5724431 G A ANO2 Missense_Mutation p.R617C 0.32 deleterious(0) probably_damaging(0.972) TCGA-32-1982-01 12 85460676 85460676 G T LRRIQ1 Nonsense_Mutation p.G899* 0.16 TCGA-32-1982-01 14 21860669 21860673 TTTGA - CHD8 Frame_Shift_Del p.I2255Rfs*2 0.34 TCGA-32-1982-01 14 22971236 22971236 G A TRAJ38 Silent p.K8K 0.29 TCGA-32-1982-01 14 23869930 23869930 G A MYH6 Silent p.F466F 0.21 TCGA-32-1982-01 15 25339260 25339260 C T SNORD116-24 RNA 0.28 TCGA-32-1982-01 15 33895352 33895352 G A RYR3 Missense_Mutation p.A651T 0.31 benign(0.23) TCGA-32-1982-01 15 44105497 44105497 C G MFAP1 Missense_Mutation p.E226Q 0.25 deleterious(0.05) possibly_damaging(0.656) TCGA-32-1982-01 16 18875017 18875018 GT - SMG1 Frame_Shift_Del p.T1217Qfs*2 0.22 TCGA-32-1982-01 16 27363906 27363906 G A IL4R Missense_Mutation p.A187T 0.28 tolerated(0.42) benign(0.001) TCGA-32-1982-01 16 5053502 5053502 C A SEC14L5 Missense_Mutation p.D410E 0.29 tolerated(0.4) benign(0.1) TCGA-32-1982-01 16 58552049 58552049 T C SETD6 Missense_Mutation p.M296T 0.29 deleterious(0) possibly_damaging(0.636) TCGA-32-1982-01 16 67477049 67477049 C T ATP6V0D1 Missense_Mutation p.D172N 0.32 deleterious(0.05) probably_damaging(0.994) TCGA-32-1982-01 16 68855965 68855965 C T CDH1 Silent p.N591N 0.25 TCGA-32-1982-01 16 731823 731823 G T STUB1 Missense_Mutation p.E185D 0.24 tolerated(0.2) benign(0) TCGA-32-1982-01 17 16526500 16526500 C T ZNF624 Missense_Mutation p.R567H 0.09 tolerated(0.14) probably_damaging(0.941) TCGA-32-1982-01 17 56772380 56772380 A G RAD51C Silent p.T78T 0.26 TCGA-32-1982-01 17 7663139 7663139 G A DNAH2 Missense_Mutation p.A890T 0.30 benign(0.063) TCGA-32-1982-01 18 77457977 77457977 A G CTDP1 Missense_Mutation p.M204V 0.32 deleterious(0.03) possibly_damaging(0.838) TCGA-32-1982-01 19 1792112 1792112 C T ATP8B3 Missense_Mutation p.R693Q 0.21 deleterious(0) probably_damaging(0.999) TCGA-32-1982-01 19 18184347 18184347 G A IL12RB1 Missense_Mutation p.R255W 0.19 deleterious(0.05) possibly_damaging(0.634) TCGA-32-1982-01 19 22271312 22271312 G A ZNF257 Missense_Mutation p.E254K 0.20 tolerated(0.14) possibly_damaging(0.605) TCGA-32-1982-01 19 47920129 47920129 T C MEIS3 Missense_Mutation p.T93A 0.13 tolerated_low_confidence(0.35) benign(0.001) TCGA-32-1982-01 19 49547457 49547457 C T CGB5 5'UTR 0.15 TCGA-32-1982-01 19 51462468 51462468 G A KLK6 Silent p.N229N 0.21 TCGA-32-1982-01 19 56423179 56423179 G A NLRP13 Silent p.D668D 0.20 TCGA-32-1982-01 19 8668748 8668748 G A ADAMTS10 Silent p.D152D 0.23 TCGA-32-1982-01 19 9058871 9058871 G T MUC16 Silent p.T9525T 0.24 TCGA-32-1982-01 1 149901667 149901667 T C MTMR11 Missense_Mutation p.I597V 0.27 tolerated(1) benign(0.003) TCGA-32-1982-01 1 235993676 235993676 G A LYST Silent p.T14T 0.33 TCGA-32-1982-01 1 248436720 248436720 G A OR2T33 Missense_Mutation p.L133F 0.14 deleterious(0.05) benign(0.109) TCGA-32-1982-01 1 248813801 248813801 G T OR2T27 Missense_Mutation p.P129T 0.10 deleterious(0) possibly_damaging(0.792) TCGA-32-1982-01 1 43296360 43296360 G A ERMAP Intron 0.24 TCGA-32-1982-01 20 24944359 24944359 C T APMAP 3'UTR 0.34 TCGA-32-1982-01 20 42788505 42788505 G A JPH2 Missense_Mutation p.R308C 0.21 deleterious(0) probably_damaging(1) TCGA-32-1982-01 21 30701961 30701961 C T BACH1 Missense_Mutation p.R575C 0.24 deleterious(0) probably_damaging(0.999) TCGA-32-1982-01 21 47545189 47545189 G A COL6A2 Missense_Mutation p.V594I 0.31 tolerated(0.36) probably_damaging(0.918) TCGA-32-1982-01 22 24561503 24561503 A G CABIN1 Missense_Mutation p.Y1639C 0.21 deleterious(0) probably_damaging(0.998) TCGA-32-1982-01 2 128631538 128631538 G A AMMECR1L Missense_Mutation p.R91W 0.33 deleterious(0.03) benign(0.153) TCGA-32-1982-01 2 1544411 1544411 C T TPO Silent p.G888G 0.20 TCGA-32-1982-01 2 179457195 179457195 T G TTN Missense_Mutation p.N19846T 0.29 TCGA-32-1982-01 2 179476881 179476881 C T TTN Missense_Mutation p.G16753R 0.29 TCGA-32-1982-01 2 196681639 196681639 C T DNAH7 Silent p.S3158S 0.24 TCGA-32-1982-01 2 21256280 21256280 C A APOB Nonsense_Mutation p.E339* 0.28 TCGA-32-1982-01 2 233759458 233759458 G A NGEF Intron 0.25 TCGA-32-1982-01 2 29294478 29294478 C T C2orf71 Missense_Mutation p.A884T 0.36 deleterious(0.01) possibly_damaging(0.829) TCGA-32-1982-01 2 79384261 79384261 C T REG3A 3'UTR 0.25 TCGA-32-1982-01 2 84518284 84518284 T A FUNDC2P2 RNA 0.29 TCGA-32-1982-01 3 53856599 53856599 G A CHDH Silent p.A258A 0.17 TCGA-32-1982-01 4 188924074 188924074 C T ZFP42 Missense_Mutation p.A38V 0.26 tolerated(0.07) benign(0.032) TCGA-32-1982-01 4 188924640 188924640 G A ZFP42 Missense_Mutation p.V227I 0.24 tolerated(0.24) benign(0) TCGA-32-1982-01 4 70615520 70615520 C G SULT1B1 Missense_Mutation p.E98D 0.26 tolerated(0.21) benign(0.001) TCGA-32-1982-01 4 82074799 82074799 T C PRKG2 Missense_Mutation p.K330R 0.33 tolerated(0.09) possibly_damaging(0.486) TCGA-32-1982-01 5 140167547 140167547 G A PCDHA1 Missense_Mutation p.E558K 0.19 deleterious_low_confidence(0.02) benign(0.196) TCGA-32-1982-01 5 140221381 140221381 G A PCDHA8 Missense_Mutation p.D159N 0.28 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-32-1982-01 5 140769126 140769126 C T PCDHGB4 Missense_Mutation p.R559W 0.26 deleterious(0) benign(0.108) TCGA-32-1982-01 5 150672978 150672978 G A SLC36A3 Silent p.Y117Y 0.31 TCGA-32-1982-01 5 50679356 50679356 C T ISL1 5'UTR 0.55 TCGA-32-1982-01 5 72857050 72857050 G A ANKRA2 Missense_Mutation p.S118F 0.23 deleterious(0) probably_damaging(0.991) TCGA-32-1982-01 6 117150029 117150031 ACA - GPRC6A In_Frame_Del p.L49del 0.35 TCGA-32-1982-01 6 135318720 135318720 G C HBS1L Missense_Mutation p.S205C 0.26 deleterious(0.04) benign(0.214) TCGA-32-1982-01 6 136582520 136582520 T C BCLAF1 Silent p.K880K 0.13 TCGA-32-1982-01 6 152831380 152831380 G A SYNE1 Nonsense_Mutation p.Q177* 0.20 TCGA-32-1982-01 6 161527602 161527602 G A MAP3K4 Missense_Mutation p.E1305K 0.27 deleterious(0.01) possibly_damaging(0.86) TCGA-32-1982-01 6 161527656 161527656 G A MAP3K4 Missense_Mutation p.D1323N 0.27 tolerated(0.21) benign(0.013) TCGA-32-1982-01 6 16306377 16306377 C T ATXN1 3'UTR 0.33 TCGA-32-1982-01 6 28200919 28200919 G A ZSCAN9 Missense_Mutation p.R434H 0.30 tolerated(0.09) probably_damaging(0.996) TCGA-32-1982-01 6 54173276 54173276 T C TINAG 5'UTR 0.12 TCGA-32-1982-01 6 74228304 74228304 C T EEF1A1 Missense_Mutation p.E268K 0.25 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-32-1982-01 7 100959711 100959711 C A RABL5 Missense_Mutation p.V107F 0.21 deleterious(0) probably_damaging(0.93) TCGA-32-1982-01 7 135304420 135304420 G T NUP205 Missense_Mutation p.D1405Y 0.18 deleterious(0) possibly_damaging(0.905) TCGA-32-1982-01 7 142630597 142630597 C T TRPV5 5'UTR 0.20 TCGA-32-1982-01 7 142650951 142650951 G A KEL Silent p.D339D 0.22 TCGA-32-1982-01 7 143884178 143884178 G A ARHGEF35 Silent p.P433P 0.17 TCGA-32-1982-01 7 37354483 37354483 C T ELMO1 Missense_Mutation p.D55N 0.12 deleterious(0) probably_damaging(0.981) TCGA-32-1982-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.85 deleterious(0) possibly_damaging(0.75) TCGA-32-1982-01 8 120629796 120629796 G A ENPP2 Missense_Mutation p.R163C 0.25 deleterious(0.03) probably_damaging(0.919) TCGA-32-1982-01 8 143310871 143310871 T C TSNARE1 Missense_Mutation p.I506V 0.33 tolerated(0.11) benign(0) TCGA-32-1982-01 8 24181418 24181418 G A ADAM28 Silent p.K264K 0.30 TCGA-32-1982-01 8 75171695 75171695 C T JPH1 Missense_Mutation p.A395T 0.31 deleterious(0) possibly_damaging(0.905) TCGA-32-1982-01 9 112017853 112017853 C T EPB41L4B Silent p.T369T 0.23 TCGA-32-1982-01 X 107084402 107084402 G A MID2 Silent p.T169T 0.31 TCGA-32-1982-01 X 151869622 151869622 G T MAGEA6 Missense_Mutation p.E104D 0.23 tolerated(0.06) benign(0.001) TCGA-32-1982-01 X 154004585 154004585 G A DKC1 Missense_Mutation p.E488K 0.42 tolerated_low_confidence(0.12) benign(0.046) TCGA-32-1982-01 X 36103536 36103536 C T CHDC2 Silent p.L174L 0.28 TCGA-32-1982-01 X 48661362 48661362 G A HDAC6 Missense_Mutation p.G60S 0.23 tolerated(1) benign(0.002) TCGA-32-1982-01 X 53439144 53439144 G T SMC1A Missense_Mutation p.T305N 0.26 deleterious(0) possibly_damaging(0.632) TCGA-32-1982-01 X 70627913 70627913 C T TAF1 Silent p.R1452R 0.26 TCGA-32-1982-01 X 96139791 96139791 C T RPA4 Missense_Mutation p.T161M 0.27 tolerated(0.23) benign(0.039) TCGA-32-1982-01 X 99662858 99662858 G A PCDH19 Silent p.S246S 0.33 TCGA-32-1986-01 10 16870839 16870839 C T CUBN Missense_Mutation p.A3577T 0.50 tolerated(0.19) benign(0.411) TCGA-32-1986-01 11 118223167 118223167 C A CD3G Missense_Mutation p.Q178K 0.28 tolerated(1) benign(0.01) TCGA-32-1986-01 11 4566817 4566817 C T OR52M1 Missense_Mutation p.R133C 0.30 deleterious(0.01) benign(0.008) TCGA-32-1986-01 11 55419151 55419151 C T OR4S2 Missense_Mutation p.R258C 0.32 deleterious(0.02) benign(0.04) TCGA-32-1986-01 11 65143941 65143941 G A SLC25A45 Silent p.R268R 0.24 TCGA-32-1986-01 12 106460540 106460540 C G NUAK1 3'UTR 0.27 TCGA-32-1986-01 12 118599775 118599775 C T TAOK3 Missense_Mutation p.D653N 0.26 deleterious(0.02) benign(0.11) TCGA-32-1986-01 12 31451078 31451078 C T FAM60A Missense_Mutation p.A21T 0.17 tolerated(0.11) possibly_damaging(0.638) TCGA-32-1986-01 12 4919731 4919731 G C KCNA6 Missense_Mutation p.G175A 0.19 tolerated(0.12) benign(0.045) TCGA-32-1986-01 12 7945667 7945667 C T NANOG Silent p.V91V 0.43 TCGA-32-1986-01 14 38286833 38286833 C T TTC6 Silent p.H1580H 0.23 TCGA-32-1986-01 14 52179253 52179253 G T FRMD6 Missense_Mutation p.G278V 0.24 deleterious(0) probably_damaging(0.945) TCGA-32-1986-01 14 68026397 68026397 A C PLEKHH1 Missense_Mutation p.K138Q 0.25 deleterious(0) probably_damaging(0.999) TCGA-32-1986-01 14 92403398 92403398 G A FBLN5 Missense_Mutation p.P91L 0.30 tolerated(0.17) benign(0) TCGA-32-1986-01 15 101528988 101528988 C T LRRK1 Missense_Mutation p.R195C 0.29 deleterious(0.02) possibly_damaging(0.776) TCGA-32-1986-01 15 38233922 38233922 C T TMCO5A Silent p.L165L 0.35 TCGA-32-1986-01 15 43816806 43816806 T C MAP1A Silent p.A1045A 0.31 TCGA-32-1986-01 15 72432114 72432114 C T SENP8 Silent p.H50H 0.25 TCGA-32-1986-01 16 7760757 7760757 C A RBFOX1 3'UTR 0.31 TCGA-32-1986-01 16 83704446 83704446 G A CDH13 Missense_Mutation p.V432I 0.29 deleterious(0.04) benign(0.138) TCGA-32-1986-01 17 18025430 18025430 C T MYO15A Missense_Mutation p.R1106W 0.32 unknown(0) TCGA-32-1986-01 17 27899640 27899640 C G TP53I13 Missense_Mutation p.R332G 0.17 deleterious(0) probably_damaging(0.999) TCGA-32-1986-01 17 29556164 29556164 T C NF1 Missense_Mutation p.L844P 0.34 deleterious(0) probably_damaging(0.991) TCGA-32-1986-01 17 33680901 33680901 C G SLFN11 Missense_Mutation p.C459S 0.26 deleterious(0) probably_damaging(0.999) TCGA-32-1986-01 17 33769128 33769128 C G SLFN13 Missense_Mutation p.C459S 0.08 deleterious(0) probably_damaging(0.999) TCGA-32-1986-01 17 39535641 39535641 G A KRT34 Silent p.N322N 0.20 TCGA-32-1986-01 18 14538203 14538203 T A POTEC Silent p.V189V 0.17 TCGA-32-1986-01 18 8807023 8807023 G A SOGA2 Missense_Mutation p.V857M 0.14 tolerated(0.39) possibly_damaging(0.515) TCGA-32-1986-01 19 43910636 43910636 G A TEX101 5'UTR 0.13 TCGA-32-1986-01 19 51875671 51875671 G A NKG7 Missense_Mutation p.S40L 0.29 deleterious(0) probably_damaging(0.988) TCGA-32-1986-01 1 154479756 154479756 G C TDRD10 Silent p.L14L 0.29 TCGA-32-1986-01 1 158224373 158224373 G A CD1A 5'UTR 0.32 TCGA-32-1986-01 1 228444458 228444458 G A OBSCN Silent p.E1564E 0.28 TCGA-32-1986-01 1 3746424 3746424 G A CEP104 Silent p.N658N 0.24 TCGA-32-1986-01 1 57417728 57417728 G A C8B Missense_Mutation p.T220M 0.30 deleterious(0) benign(0.092) TCGA-32-1986-01 1 89664552 89664552 C T GBP4 5'UTR 0.29 TCGA-32-1986-01 20 32981637 32981637 A G ITCH Missense_Mutation p.Q7R 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-32-1986-01 20 43057004 43057004 C T HNF4A Missense_Mutation p.H387Y 0.21 deleterious(0.01) possibly_damaging(0.608) TCGA-32-1986-01 20 48098546 48098546 G A KCNB1 Missense_Mutation p.R158W 0.27 deleterious(0) probably_damaging(0.971) TCGA-32-1986-01 22 38341090 38341090 C T C22orf23 Missense_Mutation p.R147Q 0.45 tolerated(0.89) benign(0.007) TCGA-32-1986-01 2 119732140 119732140 G A MARCO Silent p.A204A 0.28 TCGA-32-1986-01 2 209036767 209036767 C T C2orf80 Silent p.L133L 0.22 TCGA-32-1986-01 2 233400092 233400092 C T CHRND 3'UTR 0.41 TCGA-32-1986-01 3 196214417 196214417 T G RNF168 Missense_Mutation p.E137D 0.26 deleterious(0.01) probably_damaging(0.927) TCGA-32-1986-01 4 153897134 153897134 A G FHDC1 Silent p.S897S 0.28 TCGA-32-1986-01 4 162680612 162680614 ATC - FSTL5 In_Frame_Del p.D226del 0.26 TCGA-32-1986-01 4 76811138 76811138 G A PPEF2 Missense_Mutation p.A130V 0.22 deleterious(0.01) probably_damaging(1) TCGA-32-1986-01 5 131409540 131409540 C - CSF2 Frame_Shift_Del p.L9Wfs*25 0.31 TCGA-32-1986-01 5 140553608 140553608 G A PCDHB7 Missense_Mutation p.E398K 0.24 tolerated_low_confidence(0.54) benign(0.003) TCGA-32-1986-01 5 161524703 161524703 C A GABRG2 Missense_Mutation p.N129K 0.23 deleterious(0.01) probably_damaging(0.998) TCGA-32-1986-01 5 81571912 81571912 T - RPS23 3'UTR 0.23 TCGA-32-1986-01 6 47592010 47592010 C T CD2AP 3'UTR 0.18 TCGA-32-1986-01 7 134552500 134552500 C T CALD1 Missense_Mutation p.R6C 0.14 deleterious(0) unknown(0) TCGA-32-1986-01 7 141747587 141747587 G A MGAM Missense_Mutation p.R834Q 0.13 deleterious(0) probably_damaging(0.977) TCGA-32-1986-01 7 150840450 150840450 C T AGAP3 Missense_Mutation p.R766W 0.09 deleterious(0) probably_damaging(0.998) TCGA-32-1986-01 7 82764629 82764629 T C PCLO Missense_Mutation p.K746R 0.15 unknown(0) TCGA-32-1986-01 7 86415655 86415655 C T GRM3 Missense_Mutation p.R183C 0.19 deleterious(0) probably_damaging(1) TCGA-32-1986-01 7 92848768 92848768 T C HEPACAM2 Intron 0.21 TCGA-32-1986-01 8 25319665 25319665 C T CDCA2 Missense_Mutation p.R110W 0.25 deleterious(0) possibly_damaging(0.711) TCGA-32-1986-01 X 70830624 70830624 C T ACRC Missense_Mutation p.R569C 0.41 unknown(0) TCGA-32-1991-01 10 71685562 71685562 C T COL13A1 Silent p.G433G 0.20 TCGA-32-1991-01 10 89717636 89717636 A T PTEN Nonsense_Mutation p.K221* 0.17 TCGA-32-1991-01 10 99350452 99350452 G A C10orf62 3'UTR 0.21 TCGA-32-1991-01 11 124120491 124120491 C T OR8G1 Silent p.L23L 0.40 TCGA-32-1991-01 11 134104939 134104939 G T VPS26B Silent p.V124V 0.39 TCGA-32-1991-01 11 64337166 64337166 G A SLC22A11 Silent p.G475G 0.32 TCGA-32-1991-01 12 10539553 10539553 G A KLRK1 Nonsense_Mutation p.R33* 0.05 TCGA-32-1991-01 12 13906747 13906747 C T GRIN2B Missense_Mutation p.V172I 0.31 tolerated(0.39) probably_damaging(0.985) TCGA-32-1991-01 12 7945568 7945568 G A NANOG Missense_Mutation p.M58I 0.38 tolerated(0.23) benign(0.062) TCGA-32-1991-01 13 22275743 22275743 C G FGF9 3'UTR 0.12 TCGA-32-1991-01 14 95932331 95932331 G A SYNE3 Silent p.S188S 0.04 TCGA-32-1991-01 15 23412214 23412214 C A RP11-467N20.5 Missense_Mutation p.K81N 0.18 benign(0.377) TCGA-32-1991-01 15 30664456 30664456 C T CHRFAM7A Silent p.R139R 0.36 TCGA-32-1991-01 15 33952594 33952594 T A RYR3 Missense_Mutation p.M1531K 0.47 benign(0.119) TCGA-32-1991-01 15 53998128 53998128 A G WDR72 Silent p.P366P 0.36 TCGA-32-1991-01 16 2134267 2134267 C A TSC2 Missense_Mutation p.H1348Q 0.09 tolerated_low_confidence(0.4) benign(0.002) TCGA-32-1991-01 16 2581146 2581146 G T CEMP1 5'UTR 0.30 TCGA-32-1991-01 16 67183810 67183810 C A B3GNT9 Silent p.L193L 0.10 TCGA-32-1991-01 17 12887884 12887884 C A ARHGAP44 Missense_Mutation p.P659H 0.39 deleterious_low_confidence(0.04) possibly_damaging(0.822) TCGA-32-1991-01 17 37762281 37762281 G A NEUROD2 Missense_Mutation p.T191I 0.49 deleterious(0) possibly_damaging(0.643) TCGA-32-1991-01 18 74090999 74090999 G A ZNF516 Missense_Mutation p.A1024V 0.54 tolerated(0.16) benign(0.001) TCGA-32-1991-01 19 19654993 19654993 G A CILP2 Missense_Mutation p.V547M 0.43 deleterious(0) probably_damaging(0.987) TCGA-32-1991-01 19 43233959 43233959 C T PSG3 Missense_Mutation p.R320H 0.34 tolerated(0.25) benign(0.009) TCGA-32-1991-01 19 49510608 49510608 C T RUVBL2 Nonsense_Mutation p.R149* 0.41 TCGA-32-1991-01 19 51981792 51981792 C G CEACAM18 Missense_Mutation p.R27G 0.45 tolerated_low_confidence(0.1) benign(0) TCGA-32-1991-01 19 54395012 54395012 G A PRKCG Missense_Mutation p.R205Q 0.16 tolerated(0.07) benign(0.003) TCGA-32-1991-01 19 55494705 55494705 A T NLRP2 Missense_Mutation p.N547Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-32-1991-01 19 7928493 7928493 C A EVI5L Missense_Mutation p.R775S 0.20 tolerated_low_confidence(0.35) benign(0.004) TCGA-32-1991-01 1 151491244 151491244 G T CGN Missense_Mutation p.K83N 0.35 tolerated(0.19) probably_damaging(0.977) TCGA-32-1991-01 1 152187646 152187646 T C HRNR Silent p.S2153S 0.04 TCGA-32-1991-01 1 179077669 179077669 C T ABL2 Silent p.P911P 0.27 TCGA-32-1991-01 1 185144110 185144110 A G SWT1 Silent p.L277L 0.41 TCGA-32-1991-01 1 196709801 196709801 G T CFH Missense_Mutation p.M945I 0.43 tolerated(0.13) benign(0.008) TCGA-32-1991-01 1 201350942 201350942 T C LAD1 3'UTR 0.39 TCGA-32-1991-01 1 207108974 207108974 C T PIGR Missense_Mutation p.R412H 0.27 deleterious(0) probably_damaging(1) TCGA-32-1991-01 1 248308541 248308541 T C OR2M5 Missense_Mutation p.V31A 0.40 deleterious(0.01) possibly_damaging(0.611) TCGA-32-1991-01 1 38345863 38345863 T C INPP5B Missense_Mutation p.K479E 0.38 tolerated(0.06) benign(0.209) TCGA-32-1991-01 1 53925660 53925660 C T DMRTB1 Silent p.R178R 0.14 TCGA-32-1991-01 2 125555882 125555882 C A CNTNAP5 Missense_Mutation p.L1067M 0.07 deleterious(0.04) benign(0.303) TCGA-32-1991-01 2 170850840 170850840 G A UBR3 Silent p.G1264G 0.35 TCGA-32-1991-01 2 208841553 208841553 A G PLEKHM3 Silent p.N456N 0.39 TCGA-32-1991-01 2 26950700 26950700 G A KCNK3 Missense_Mutation p.R150Q 0.32 tolerated(0.1) benign(0.283) TCGA-32-1991-01 2 99949699 99949699 C A TXNDC9 5'UTR 0.08 TCGA-32-1991-01 3 180702463 180702463 C T DNAJC19 Missense_Mutation p.A106T 0.10 deleterious(0) probably_damaging(0.999) TCGA-32-1991-01 3 42905968 42905968 C T ACKR2 5'UTR 0.69 TCGA-32-1991-01 4 110608859 110608859 C A CCDC109B 3'UTR 0.46 TCGA-32-1991-01 4 25127315 25127315 C T SEPSECS Splice_Site p.X404_splice 0.40 TCGA-32-1991-01 4 9784083 9784083 A T DRD5 Missense_Mutation p.R144W 0.38 deleterious(0.01) benign(0.021) TCGA-32-1991-01 5 150133220 150133220 C A DCTN4 Splice_Site p.X69_splice 0.47 TCGA-32-1991-01 5 16453250 16453250 T A ZNF622 Missense_Mutation p.H393L 0.39 deleterious(0) possibly_damaging(0.694) TCGA-32-1991-01 5 32739137 32739137 G A NPR3 Splice_Site p.X353_splice 0.35 TCGA-32-1991-01 5 67591096 67591098 GAA - PIK3R1 In_Frame_Del p.M563_N564delinsI 0.41 TCGA-32-1991-01 6 136599814 136599814 G A BCLAF1 Nonsense_Mutation p.R69* 0.17 TCGA-32-1991-01 6 38084429 38084429 G C ZFAND3 Missense_Mutation p.R148P 0.40 tolerated(0.16) possibly_damaging(0.599) TCGA-32-1991-01 6 7880731 7880731 T C BMP6 3'UTR 0.07 TCGA-32-1991-01 7 122338474 122338474 T G RNF133 Missense_Mutation p.I167L 0.30 tolerated(0.06) benign(0.008) TCGA-32-1991-01 7 142569322 142569322 C A TRPV6 3'UTR 0.26 TCGA-32-1991-01 7 142983977 142983977 A C TMEM139 3'UTR 0.26 TCGA-32-1991-01 7 55221821 55221821 G A EGFR Missense_Mutation p.A289T 0.03 deleterious(0) probably_damaging(0.981) TCGA-32-1991-01 7 64526725 64526725 A G SNORA22 3'Flank 0.16 TCGA-32-1991-01 7 80546126 80546126 G A SEMA3C 5'UTR 0.31 TCGA-32-1991-01 8 134240040 134240040 C A WISP1 3'UTR 0.10 TCGA-32-1991-01 8 145748578 145748578 C G LRRC24 Missense_Mutation p.E275Q 0.10 deleterious(0.02) possibly_damaging(0.891) TCGA-32-1991-01 8 23538761 23538761 C T NKX3-1 Silent p.V226V 0.39 TCGA-32-1991-01 8 6794410 6794410 G A DEFA4 Silent p.I4I 0.30 TCGA-32-1991-01 9 86554575 86554575 G A C9orf64 Missense_Mutation p.L293F 0.44 tolerated(0.07) probably_damaging(0.938) TCGA-32-1991-01 9 91041400 91041401 - T SPIN1 5'UTR 0.28 TCGA-32-1991-01 9 92220750 92220750 C T GADD45G Silent p.G108G 0.06 TCGA-32-1991-01 9 98728904 98728904 G T ERCC6L2 Nonsense_Mutation p.G681* 0.37 TCGA-32-1991-01 X 109694254 109694254 G A RGAG1 Missense_Mutation p.V137I 0.82 tolerated(0.07) benign(0.031) TCGA-32-1991-01 X 148794878 148794878 A C MAGEA11 Missense_Mutation p.K20T 0.76 deleterious_low_confidence(0) benign(0.01) TCGA-32-2491-01 10 46962073 46962073 A G SYT15 Missense_Mutation p.M388T 0.10 deleterious(0) probably_damaging(0.997) TCGA-32-2491-01 11 102702857 102702857 G C MMP3 3'Flank 0.17 TCGA-32-2491-01 11 32979551 32979551 C T QSER1 Missense_Mutation p.R1501W 0.24 deleterious(0) probably_damaging(0.999) TCGA-32-2491-01 11 62378668 62378668 C A EML3 Nonsense_Mutation p.E115* 0.15 TCGA-32-2491-01 11 66358101 66358101 C T CCDC87 Missense_Mutation p.E796K 0.32 deleterious(0.01) probably_damaging(0.947) TCGA-32-2491-01 11 92535042 92535042 G A FAT3 Missense_Mutation p.D2955N 0.26 benign(0.022) TCGA-32-2491-01 11 93839268 93839268 A G HEPHL1 Missense_Mutation p.H1006R 0.20 deleterious(0) probably_damaging(1) TCGA-32-2491-01 12 105380235 105380235 C G C12orf45 Missense_Mutation p.D35E 0.14 tolerated(0.29) benign(0.002) TCGA-32-2491-01 12 111099056 111099056 G A HVCN1 Silent p.D73D 0.25 TCGA-32-2491-01 12 113836552 113836552 C T SDS Missense_Mutation p.R98H 0.25 deleterious(0.04) possibly_damaging(0.551) TCGA-32-2491-01 12 22602814 22602815 AA - C2CD5 Frame_Shift_Del p.L961Hfs*6 0.36 TCGA-32-2491-01 13 48955550 48955550 C T RB1 Nonsense_Mutation p.R556* 0.43 TCGA-32-2491-01 14 34931416 34931416 G A SPTSSA 5'UTR 0.16 TCGA-32-2491-01 14 94776220 94776220 G A SERPINA6 Missense_Mutation p.S246L 0.32 tolerated(0.18) benign(0.01) TCGA-32-2491-01 15 101933603 101933603 G A PCSK6 Silent p.F340F 0.25 TCGA-32-2491-01 15 81605474 81605474 G A STARD5 3'UTR 0.15 TCGA-32-2491-01 16 31422196 31422196 G A ITGAD Silent p.T451T 0.22 TCGA-32-2491-01 16 57492187 57492187 C G COQ9 Missense_Mutation p.N212K 0.08 deleterious(0.04) possibly_damaging(0.883) TCGA-32-2491-01 17 17697820 17697820 G A RAI1 Missense_Mutation p.G520S 0.44 tolerated(0.3) probably_damaging(0.991) TCGA-32-2491-01 17 26818573 26818573 C T SLC13A2 Silent p.I280I 0.42 TCGA-32-2491-01 17 34499272 34499272 G A TBC1D3B Missense_Mutation p.R147W 0.11 deleterious(0) possibly_damaging(0.67) TCGA-32-2491-01 17 41168349 41168349 A G VAT1 Missense_Mutation p.I358T 0.28 deleterious(0) probably_damaging(0.971) TCGA-32-2491-01 17 72851132 72851132 C T GRIN2C Missense_Mutation p.V34M 0.28 deleterious(0.01) benign(0.08) TCGA-32-2491-01 17 7577568 7577568 C A TP53 Missense_Mutation p.C238F 0.42 deleterious(0) probably_damaging(1) TCGA-32-2491-01 18 64171932 64171932 G A CDH19 3'UTR 0.12 TCGA-32-2491-01 19 10434234 10434234 G A RAVER1 Silent p.C272C 0.16 TCGA-32-2491-01 19 15739191 15739191 G A CYP4F8 RNA 0.07 TCGA-32-2491-01 19 15918727 15918727 C A OR10H1 Missense_Mutation p.G41C 0.22 deleterious(0.01) probably_damaging(1) TCGA-32-2491-01 19 41248416 41248416 G A C19orf54 Silent p.Y326Y 0.20 TCGA-32-2491-01 19 45412509 45412509 C T APOE 3'UTR 0.20 TCGA-32-2491-01 19 8661249 8661249 C T ADAMTS10 Missense_Mutation p.V378I 0.13 tolerated(1) benign(0.003) TCGA-32-2491-01 19 9050207 9050207 G A MUC16 Missense_Mutation p.T10475I 0.19 benign(0.016) TCGA-32-2491-01 1 10702922 10702922 C T CASZ1 Missense_Mutation p.A1386T 0.16 deleterious_low_confidence(0.05) possibly_damaging(0.491) TCGA-32-2491-01 1 171079944 171079944 G A FMO3 Missense_Mutation p.M211I 0.30 tolerated(0.15) benign(0.001) TCGA-32-2491-01 1 179086548 179086548 C T ABL2 Missense_Mutation p.A443T 0.26 deleterious(0.03) probably_damaging(0.959) TCGA-32-2491-01 1 198685877 198685877 C T PTPRC Missense_Mutation p.T453M 0.29 deleterious(0) probably_damaging(0.988) TCGA-32-2491-01 1 22170742 22170742 C G HSPG2 Missense_Mutation p.A2839P 0.33 probably_damaging(0.997) TCGA-32-2491-01 1 228404990 228404990 G T OBSCN Splice_Site p.X885_splice 0.22 TCGA-32-2491-01 1 248685648 248685648 G A OR2G6 Missense_Mutation p.R234H 0.38 deleterious(0) probably_damaging(0.961) TCGA-32-2491-01 1 3684010 3684010 G A CCDC27 Splice_Site p.X581_splice 0.09 TCGA-32-2491-01 1 37282846 37282846 G A GRIK3 Missense_Mutation p.R636C 0.20 deleterious(0) probably_damaging(1) TCGA-32-2491-01 1 43233236 43233236 C T C1orf50 Missense_Mutation p.H46Y 0.24 tolerated(0.15) possibly_damaging(0.761) TCGA-32-2491-01 1 45340232 45340232 C T EIF2B3 Intron 0.11 TCGA-32-2491-01 1 74507037 74507037 A G LRRIQ3 Silent p.T526T 0.24 TCGA-32-2491-01 20 35507541 35507541 G A TLDC2 Missense_Mutation p.R96Q 0.25 tolerated(0.65) benign(0.007) TCGA-32-2491-01 20 44519558 44519558 G A NEURL2 Missense_Mutation p.R25C 0.11 deleterious(0) probably_damaging(0.996) TCGA-32-2491-01 20 60912694 60912694 G A LAMA5 Missense_Mutation p.R706W 0.10 probably_damaging(0.999) TCGA-32-2491-01 21 10862837 10862837 G A IGHV1OR21-1 Missense_Mutation p.G45R 0.10 deleterious(0.02) possibly_damaging(0.865) TCGA-32-2491-01 22 23135361 23135361 C T IGLV2-11 Missense_Mutation p.R75W 0.37 deleterious_low_confidence(0) benign(0.324) TCGA-32-2491-01 22 31336801 31336801 C T MORC2 Missense_Mutation p.R221H 0.25 deleterious(0.02) benign(0.127) TCGA-32-2491-01 22 41322590 41322590 G A XPNPEP3 3'UTR 0.12 TCGA-32-2491-01 2 122220134 122220134 C T CLASP1 Missense_Mutation p.A305T 0.21 tolerated(0.07) benign(0.016) TCGA-32-2491-01 2 171358331 171358331 A G MYO3B Missense_Mutation p.K1109R 0.32 tolerated(0.18) benign(0.001) TCGA-32-2491-01 2 179325759 179325759 C A DFNB59 Missense_Mutation p.L273I 0.28 tolerated(0.2) benign(0.037) TCGA-32-2491-01 2 179423224 179423224 T A TTN Missense_Mutation p.N28988Y 0.18 TCGA-32-2491-01 2 179424446 179424446 C A TTN Missense_Mutation p.D28805Y 0.19 TCGA-32-2491-01 2 202345038 202345038 C T STRADB 3'UTR 0.32 TCGA-32-2491-01 2 223339305 223339305 G A SGPP2 Missense_Mutation p.V80I 0.24 tolerated(0.74) benign(0.002) TCGA-32-2491-01 2 231106159 231106159 C T SP140 Silent p.N149N 0.25 TCGA-32-2491-01 2 73449902 73449902 G A SMYD5 Missense_Mutation p.R221Q 0.15 tolerated(0.11) benign(0.088) TCGA-32-2491-01 3 140397352 140397352 G A TRIM42 Missense_Mutation p.R94H 0.18 tolerated(0.05) benign(0.027) TCGA-32-2491-01 3 148901264 148901264 A T CP Missense_Mutation p.L805Q 0.26 deleterious(0) probably_damaging(1) TCGA-32-2491-01 3 178952072 178952072 A G PIK3CA Missense_Mutation p.M1043V 0.27 tolerated(0.06) benign(0.037) TCGA-32-2491-01 3 33731395 33731395 C A CLASP2 Missense_Mutation p.D102Y 0.17 deleterious(0) probably_damaging(1) TCGA-32-2491-01 3 36869693 36869693 C T TRANK1 3'UTR 0.15 TCGA-32-2491-01 3 44794812 44794812 C T KIAA1143 3'UTR 0.22 TCGA-32-2491-01 3 52778291 52778291 G A NEK4 Nonsense_Mutation p.R620* 0.25 TCGA-32-2491-01 3 58510285 58510285 G A ACOX2 Missense_Mutation p.T465M 0.28 tolerated(0.15) benign(0.186) TCGA-32-2491-01 3 58853638 58853638 G A C3orf67 Missense_Mutation p.P222L 0.21 tolerated(0.35) probably_damaging(0.998) TCGA-32-2491-01 4 119239641 119239641 G A PRSS12 Missense_Mutation p.R348C 0.21 deleterious(0) possibly_damaging(0.849) TCGA-32-2491-01 4 166910622 166910622 G A TLL1 Missense_Mutation p.G87R 0.33 tolerated(0.33) benign(0.002) TCGA-32-2491-01 4 185018423 185018423 C G ENPP6 Silent p.R364R 0.22 TCGA-32-2491-01 4 79173649 79173649 A G FRAS1 Missense_Mutation p.Q138R 0.28 benign(0.005) TCGA-32-2491-01 4 9784905 9784905 G A DRD5 Missense_Mutation p.V418I 0.27 tolerated(0.3) benign(0.06) TCGA-32-2491-01 5 118970068 118970068 G A FAM170A Missense_Mutation p.V209I 0.29 tolerated(0.13) benign(0.1) TCGA-32-2491-01 5 140215694 140215694 G A PCDHA7 Missense_Mutation p.A576T 0.26 tolerated_low_confidence(0.13) benign(0.007) TCGA-32-2491-01 5 140221979 140221979 C G PCDHA8 Missense_Mutation p.P358R 0.23 deleterious_low_confidence(0) probably_damaging(0.954) TCGA-32-2491-01 5 140720522 140720522 G A PCDHGA2 Missense_Mutation p.V662M 0.30 deleterious_low_confidence(0) possibly_damaging(0.737) TCGA-32-2491-01 5 23527861 23527861 C T PRDM9 Silent p.Y888Y 0.27 TCGA-32-2491-01 6 13278556 13278556 C G TBC1D7 Intron 0.15 TCGA-32-2491-01 6 136597032 136597032 C T BCLAF1 Missense_Mutation p.R544H 0.10 tolerated(0.09) possibly_damaging(0.715) TCGA-32-2491-01 6 152685991 152685991 C T SYNE1 Missense_Mutation p.R3379H 0.26 benign(0.01) TCGA-32-2491-01 6 31508154 31508154 G C DDX39B Silent p.L52L 0.22 TCGA-32-2491-01 6 56484542 56484542 C T DST Intron 0.29 TCGA-32-2491-01 6 79577197 79577197 G A IRAK1BP1 5'UTR 0.08 TCGA-32-2491-01 7 100675953 100675953 A G MUC17 Missense_Mutation p.D419G 0.20 possibly_damaging(0.673) TCGA-32-2491-01 7 103002401 103002401 T C PSMC2 Intron 0.27 TCGA-32-2491-01 7 141736731 141736731 C T MGAM Missense_Mutation p.R729C 0.18 deleterious(0.01) probably_damaging(0.916) TCGA-32-2491-01 7 141954883 141954883 C T PRSS58 Missense_Mutation p.C143Y 0.20 tolerated(0.42) probably_damaging(0.951) TCGA-32-2491-01 7 148921339 148921339 G A ZNF282 Missense_Mutation p.S539N 0.08 tolerated(0.28) possibly_damaging(0.454) TCGA-32-2491-01 7 30795056 30795056 G A INMT Silent p.K127K 0.11 TCGA-32-2491-01 7 92462489 92462489 C A CDK6 Missense_Mutation p.G50V 0.10 tolerated(0.28) benign(0.33) TCGA-32-2491-01 7 94034005 94034005 G T COL1A2 Missense_Mutation p.G109C 0.23 unknown(0) TCGA-32-2491-01 7 99463689 99463689 T A CYP3A43 3'Flank 0.09 TCGA-32-2491-01 8 145095019 145095019 C G SPATC1 Missense_Mutation p.L141V 0.11 deleterious(0.04) probably_damaging(0.996) TCGA-32-2491-01 8 145699931 145699931 C A FOXH1 Missense_Mutation p.G263V 0.11 tolerated(0.17) benign(0.005) TCGA-32-2491-01 8 30694497 30694497 C T TEX15 Silent p.A2718A 0.21 TCGA-32-2491-01 8 52387561 52387561 G A PXDNL Missense_Mutation p.A222V 0.13 tolerated(0.24) benign(0.033) TCGA-32-2491-01 9 134151605 134151605 C T FAM78A 5'UTR 0.23 TCGA-32-2491-01 9 139929144 139929144 C T C9orf139 Missense_Mutation p.R71C 0.28 tolerated_low_confidence(0.18) benign(0.005) TCGA-32-2491-01 9 18777020 18777020 T C ADAMTSL1 Silent p.Y931Y 0.38 TCGA-32-2491-01 X 103359839 103359839 C G ZCCHC18 Missense_Mutation p.T346R 0.13 deleterious(0.03) possibly_damaging(0.576) TCGA-32-2491-01 X 64887636 64887636 T C MSN 5'UTR 0.25 TCGA-32-2491-01 X 85403790 85403790 G A DACH2 Missense_Mutation p.G56R 0.09 tolerated_low_confidence(0.26) benign(0.007) TCGA-32-2491-01 X 99925877 99925877 T C SRPX2 Missense_Mutation p.Y431H 0.56 deleterious(0) possibly_damaging(0.89) TCGA-32-2494-01 10 26312961 26312961 C T MYO3A Missense_Mutation p.P248S 0.28 deleterious(0.01) probably_damaging(0.987) TCGA-32-2494-01 10 48429323 48429323 C T GDF10 Missense_Mutation p.R188H 0.65 tolerated(0.11) probably_damaging(0.976) TCGA-32-2494-01 11 117800096 117800096 A G TMPRSS13 5'Flank 0.12 TCGA-32-2494-01 11 122742136 122742136 A G CRTAM 3'UTR 0.12 TCGA-32-2494-01 11 66133408 66133408 C A SLC29A2 Missense_Mutation p.W353L 0.18 deleterious(0.01) probably_damaging(1) TCGA-32-2494-01 11 66133409 66133409 A C SLC29A2 Missense_Mutation p.W353G 0.20 deleterious(0) probably_damaging(1) TCGA-32-2494-01 11 82639902 82639905 CAAA - C11orf82 Frame_Shift_Del p.K68Cfs*11 0.28 TCGA-32-2494-01 12 130830969 130830969 G A PIWIL1 Missense_Mutation p.R124H 0.31 tolerated(0.13) probably_damaging(0.964) TCGA-32-2494-01 12 95660405 95660405 C T VEZT Missense_Mutation p.T236I 0.25 deleterious(0.01) possibly_damaging(0.728) TCGA-32-2494-01 14 31790820 31790820 C T HEATR5A Missense_Mutation p.S1285N 0.30 tolerated(0.11) benign(0.027) TCGA-32-2494-01 14 75745716 75745716 G C FOS Missense_Mutation p.E11Q 0.07 deleterious(0.01) possibly_damaging(0.586) TCGA-32-2494-01 14 90650893 90650893 G A KCNK13 Missense_Mutation p.R258H 0.27 deleterious(0.02) benign(0.426) TCGA-32-2494-01 15 65495753 65495753 G A CILP Silent p.S325S 0.31 TCGA-32-2494-01 15 75137888 75137888 T G SCAMP2 Missense_Mutation p.I261L 0.32 deleterious(0.05) benign(0.002) TCGA-32-2494-01 15 76075166 76075166 C T RN7SL319P 5'Flank 0.31 TCGA-32-2494-01 16 4033331 4033331 C T ADCY9 Silent p.L807L 0.17 TCGA-32-2494-01 16 53500990 53500990 G T RBL2 Silent p.L628L 0.22 TCGA-32-2494-01 16 69782153 69782153 C A NOB1 Missense_Mutation p.R269L 0.08 deleterious(0) probably_damaging(0.992) TCGA-32-2494-01 17 14139674 14139674 G A CDRT15 Silent p.A112A 0.14 TCGA-32-2494-01 17 19651602 19651602 C T ALDH3A1 5'Flank 0.19 TCGA-32-2494-01 17 35834667 35834667 G A TADA2A Missense_Mutation p.R360Q 0.19 deleterious(0.02) benign(0.173) TCGA-32-2494-01 17 39021192 39021192 G A KRT12 Missense_Mutation p.R225C 0.27 tolerated(0.08) benign(0.061) TCGA-32-2494-01 17 61466072 61466072 C G TANC2 Missense_Mutation p.S849C 0.07 deleterious(0.04) possibly_damaging(0.601) TCGA-32-2494-01 17 7163801 7163801 G A CLDN7 Silent p.I176I 0.31 TCGA-32-2494-01 18 61585321 61585321 G A SERPINB10 Silent p.T119T 0.26 TCGA-32-2494-01 19 4323057 4323057 G A FSD1 Missense_Mutation p.G372S 0.30 deleterious(0.03) probably_damaging(0.95) TCGA-32-2494-01 19 50001028 50001028 G A RPS11 Intron 0.24 TCGA-32-2494-01 19 547333 547333 C T GZMM Missense_Mutation p.R37C 0.29 deleterious(0) probably_damaging(0.997) TCGA-32-2494-01 19 55645562 55645562 C G TNNT1 Missense_Mutation p.A208P 0.12 tolerated_low_confidence(0.25) benign(0.164) TCGA-32-2494-01 1 110765855 110765855 C A KCNC4 Silent p.I316I 0.05 TCGA-32-2494-01 1 149858192 149858192 G C HIST2H2BE 5'UTR 0.24 TCGA-32-2494-01 1 16377403 16377403 G A CLCNKB Missense_Mutation p.D363N 0.20 deleterious(0) possibly_damaging(0.811) TCGA-32-2494-01 1 167667016 167667016 C T RCSD1 Silent p.T385T 0.21 TCGA-32-2494-01 1 183111900 183111900 A G LAMC1 Missense_Mutation p.N1602S 0.17 deleterious(0.02) probably_damaging(0.996) TCGA-32-2494-01 1 186107024 186107024 A T HMCN1 Missense_Mutation p.N4615I 0.24 possibly_damaging(0.505) TCGA-32-2494-01 1 22140914 22140914 C G LDLRAD2 Missense_Mutation p.Q37E 0.20 deleterious(0.01) benign(0.183) TCGA-32-2494-01 1 22165399 22165399 G A HSPG2 Missense_Mutation p.P3357S 0.17 benign(0.098) TCGA-32-2494-01 1 53925199 53925199 G T DMRTB1 Nonsense_Mutation p.G25* 0.34 TCGA-32-2494-01 1 94650593 94650594 - T ARHGAP29 Frame_Shift_Ins p.C649Vfs*48 0.27 TCGA-32-2494-01 21 10862767 10862767 A G IGHV1OR21-1 Silent p.V21V 0.09 TCGA-32-2494-01 21 31874370 31874370 G A KRTAP19-5 Silent p.Y13Y 0.29 TCGA-32-2494-01 21 31986219 31986219 C T KRTAP6-1 Missense_Mutation p.C2Y 0.07 unknown(0) TCGA-32-2494-01 22 28193539 28193539 G A MN1 Missense_Mutation p.P998L 0.42 possibly_damaging(0.592) TCGA-32-2494-01 22 50886843 50886843 C T SBF1 Missense_Mutation p.A1728T 0.21 tolerated(0.52) benign(0.072) TCGA-32-2494-01 2 113514209 113514209 C T CKAP2L Missense_Mutation p.G247R 0.25 tolerated(0.84) benign(0.008) TCGA-32-2494-01 2 179478775 179478775 T C TTN Intron 0.31 TCGA-32-2494-01 2 209214771 209214771 C A PIKFYVE Missense_Mutation p.Q1800K 0.05 tolerated(0.29) benign(0.004) TCGA-32-2494-01 2 48915481 48915481 C A LHCGR Silent p.L485L 0.33 TCGA-32-2494-01 3 1339583 1339583 G T CNTN6 Silent p.G223G 0.24 TCGA-32-2494-01 3 138374244 138374244 T G PIK3CB Missense_Mutation p.D1067A 0.29 deleterious(0) probably_damaging(0.979) TCGA-32-2494-01 3 138374281 138374281 T C PIK3CB Missense_Mutation p.T1055A 0.26 deleterious(0) probably_damaging(0.999) TCGA-32-2494-01 3 14799018 14799018 A C C3orf20 Missense_Mutation p.D694A 0.24 deleterious(0) probably_damaging(1) TCGA-32-2494-01 3 184543975 184543975 C G VPS8 Missense_Mutation p.P60A 0.34 deleterious(0) probably_damaging(0.99) TCGA-32-2494-01 3 195012473 195012473 C T ACAP2 Silent p.R675R 0.24 TCGA-32-2494-01 3 195711080 195711080 C T SDHAP1 RNA 0.15 TCGA-32-2494-01 3 40231528 40231528 G A MYRIP Silent p.R413R 0.30 TCGA-32-2494-01 4 149181209 149181209 A C NR3C2 Missense_Mutation p.C606W 0.24 deleterious(0) possibly_damaging(0.892) TCGA-32-2494-01 4 74316398 74316398 A - AFP Frame_Shift_Del p.M454Wfs*37 0.36 TCGA-32-2494-01 5 141309740 141309740 C T KIAA0141 Intron 0.22 TCGA-32-2494-01 5 74998543 74998543 T C POC5 Missense_Mutation p.T134A 0.10 tolerated(0.08) probably_damaging(0.953) TCGA-32-2494-01 5 79048586 79048586 A C CMYA5 Silent p.A3693A 0.27 TCGA-32-2494-01 6 100901720 100901720 C T SIM1 Missense_Mutation p.G59E 0.22 deleterious(0) probably_damaging(1) TCGA-32-2494-01 6 12121493 12121493 G A HIVEP1 Missense_Mutation p.V489I 0.31 tolerated(0.1) benign(0.013) TCGA-32-2494-01 6 159672498 159672498 G A FNDC1 Missense_Mutation p.V1667M 0.30 tolerated(1) possibly_damaging(0.622) TCGA-32-2494-01 6 86258062 86258062 G C SNX14 Missense_Mutation p.S275C 0.30 deleterious(0) possibly_damaging(0.841) TCGA-32-2494-01 7 100552437 100552437 A T MUC3A Silent p.S396S 0.20 TCGA-32-2494-01 7 117067510 117067510 G A ASZ1 Missense_Mutation p.A2V 0.24 deleterious(0.01) possibly_damaging(0.521) TCGA-32-2494-01 7 142575507 142575507 C T TRPV6 Silent p.A82A 0.22 TCGA-32-2494-01 7 150174928 150174928 G A GIMAP8 3'UTR 0.32 TCGA-32-2494-01 7 2255875 2255875 C T MAD1L1 Silent p.V242V 0.27 TCGA-32-2494-01 7 27238936 27238936 A G HOXA13 Missense_Mutation p.V254A 0.20 deleterious(0.02) possibly_damaging(0.817) TCGA-32-2494-01 8 143856540 143856540 T A LYNX1 Intron 0.13 TCGA-32-2494-01 8 56854426 56854426 G A LYN Missense_Mutation p.C3Y 0.31 deleterious(0) probably_damaging(0.999) TCGA-32-2494-01 9 107298263 107298263 C A OR13C3 Missense_Mutation p.V278L 0.16 deleterious(0) possibly_damaging(0.734) TCGA-32-2494-01 9 139743790 139743790 G T PHPT1 5'UTR 0.26 TCGA-32-2494-01 9 91266972 91266972 G A RP13-60M5.2 RNA 0.24 TCGA-32-2494-01 X 129492634 129492634 A G SLC25A14 Silent p.G173G 0.30 TCGA-32-2494-01 X 135433699 135433699 C T GPR112 Missense_Mutation p.S2274L 0.28 deleterious(0) benign(0) TCGA-32-2494-01 X 138879436 138879436 C A ATP11C Missense_Mutation p.A306S 0.28 tolerated(0.12) probably_damaging(0.999) TCGA-32-2494-01 X 153543586 153543586 G A TKTL1 Missense_Mutation p.V310I 0.25 tolerated(0.84) benign(0.012) TCGA-32-2494-01 X 50053319 50053319 G T CCNB3 Missense_Mutation p.S717I 0.25 tolerated(0.45) benign(0.132) TCGA-32-2494-01 X 64721739 64721739 G A ZC3H12B Silent p.S387S 0.24 TCGA-32-2494-01 X 69263788 69263788 A G AWAT2 Silent p.Y85Y 0.27 TCGA-32-2494-01 X 70586172 70586172 C T TAF1 Missense_Mutation p.P3L 0.24 deleterious_low_confidence(0.01) benign(0.006) TCGA-32-2495-01 10 112655708 112655708 T C PDCD4 Silent p.G404G 0.11 TCGA-32-2495-01 10 89717664 89717664 G A PTEN Missense_Mutation p.G230E 0.71 tolerated(0.27) benign(0.016) TCGA-32-2495-01 11 11969542 11969542 C T USP47 Missense_Mutation p.H980Y 0.32 tolerated(0.3) benign(0.122) TCGA-32-2495-01 11 46761005 46761005 T C F2 3'UTR 0.44 TCGA-32-2495-01 11 63487657 63487657 C T RTN3 Silent p.D561D 0.04 TCGA-32-2495-01 11 64990066 64990066 A G SLC22A20 Intron 0.05 TCGA-32-2495-01 12 109017719 109017719 T C SELPLG Missense_Mutation p.Q138R 0.17 tolerated(0.53) unknown(0) TCGA-32-2495-01 12 113770719 113770719 C G SLC8B1 5'UTR 0.37 TCGA-32-2495-01 12 118198974 118198974 C T KSR2 Silent p.T276T 0.40 TCGA-32-2495-01 12 132527862 132527862 T A EP400 Missense_Mutation p.I2074N 0.05 unknown(0) TCGA-32-2495-01 12 7177423 7177423 C T C1S Missense_Mutation p.P512L 0.39 deleterious(0.01) probably_damaging(0.985) TCGA-32-2495-01 12 97087506 97087506 C T C12orf55 Missense_Mutation p.P2091S 0.28 deleterious(0) benign(0) TCGA-32-2495-01 13 103718719 103718719 C T SLC10A2 5'UTR 0.28 TCGA-32-2495-01 13 99356577 99356577 G A SLC15A1 Missense_Mutation p.T461M 0.35 deleterious(0) probably_damaging(0.977) TCGA-32-2495-01 14 103933475 103933475 A C MARK3 Missense_Mutation p.K353Q 0.48 deleterious(0.01) possibly_damaging(0.467) TCGA-32-2495-01 14 20216022 20216022 G T OR4Q3 Missense_Mutation p.V146F 0.30 deleterious(0) possibly_damaging(0.779) TCGA-32-2495-01 15 24924482 24924482 G A NPAP1 Silent p.P1156P 0.34 TCGA-32-2495-01 16 10032404 10032404 G A GRIN2A Missense_Mutation p.P140L 0.35 tolerated(0.16) benign(0.007) TCGA-32-2495-01 16 15811149 15811149 C G MYH11 Missense_Mutation p.E1791D 0.38 probably_damaging(0.997) TCGA-32-2495-01 16 21698929 21698929 C T OTOA Missense_Mutation p.R199W 0.45 tolerated(0.09) benign(0.002) TCGA-32-2495-01 17 19316608 19316608 G A RNF112 Missense_Mutation p.G202S 0.40 tolerated(1) benign(0.019) TCGA-32-2495-01 17 39580498 39580498 C T KRT37 Missense_Mutation p.G93E 0.40 deleterious(0.04) benign(0.109) TCGA-32-2495-01 17 73887344 73887344 C T TRIM65 Missense_Mutation p.R357H 0.26 tolerated(0.56) benign(0.003) TCGA-32-2495-01 18 20606214 20606215 AG - RBBP8 3'UTR 0.35 TCGA-32-2495-01 18 2770043 2770044 CA - SMCHD1 Frame_Shift_Del p.Q1635Vfs*6 0.25 TCGA-32-2495-01 18 33740957 33740957 C G ELP2 Nonsense_Mutation p.S649* 0.29 TCGA-32-2495-01 18 77246687 77246687 C T NFATC1 Silent p.P831P 0.08 TCGA-32-2495-01 19 10131987 10131987 C T RDH8 Missense_Mutation p.A218V 0.31 tolerated(0.21) benign(0.355) TCGA-32-2495-01 19 31767776 31767776 C T TSHZ3 Missense_Mutation p.V975I 0.25 tolerated(0.38) benign(0.004) TCGA-32-2495-01 19 45389216 45389216 A - PVRL2 Frame_Shift_Del p.K407Sfs*88 0.11 TCGA-32-2495-01 19 49253750 49253750 G A FUT1 Silent p.N263N 0.24 TCGA-32-2495-01 19 51503928 51503928 C T KLK8 Silent p.L39L 0.23 TCGA-32-2495-01 19 52918768 52918768 C G ZNF528 Silent p.V221V 0.04 TCGA-32-2495-01 19 58723892 58723892 C T ZNF274 Nonsense_Mutation p.R448* 0.20 TCGA-32-2495-01 19 8201272 8201272 C T FBN3 Missense_Mutation p.D449N 0.25 deleterious(0) probably_damaging(0.995) TCGA-32-2495-01 1 152282151 152282151 G A FLG Silent p.H1737H 0.46 TCGA-32-2495-01 1 16377396 16377396 G A CLCNKB Silent p.S360S 0.31 TCGA-32-2495-01 1 204130489 204130489 C T REN Missense_Mutation p.V102I 0.34 tolerated(0.31) benign(0.02) TCGA-32-2495-01 1 248525116 248525116 C A OR2T4 Silent p.I78I 0.30 TCGA-32-2495-01 1 248844752 248844752 G A OR14I1 Missense_Mutation p.P285L 0.39 deleterious(0) probably_damaging(0.958) TCGA-32-2495-01 1 28477001 28477001 C T PTAFR Missense_Mutation p.E178K 0.40 tolerated(0.05) benign(0.269) TCGA-32-2495-01 1 75708695 75708695 A G SLC44A5 Missense_Mutation p.I116T 0.36 deleterious(0.04) benign(0.439) TCGA-32-2495-01 1 94508933 94508933 C T ABCA4 Missense_Mutation p.G1050D 0.49 deleterious(0) probably_damaging(0.996) TCGA-32-2495-01 21 31971188 31971188 G A KRTAP6-2 Silent p.C2C 0.40 TCGA-32-2495-01 21 37505029 37505029 G C CBR3 5'Flank 0.20 TCGA-32-2495-01 21 38380461 38380461 G A RIPPLY3 Missense_Mutation p.A37T 0.42 tolerated(1) benign(0.064) TCGA-32-2495-01 21 47662773 47662773 A C MCM3AP Missense_Mutation p.L1790W 0.07 tolerated(0.19) probably_damaging(0.997) TCGA-32-2495-01 22 29147228 29147228 G A HSCB Splice_Site p.X190_splice 0.12 TCGA-32-2495-01 2 136594490 136594490 T A LCT Missense_Mutation p.I84F 0.43 deleterious(0) possibly_damaging(0.756) TCGA-32-2495-01 2 165551199 165551199 A T COBLL1 Missense_Mutation p.N939K 0.11 tolerated(0.36) benign(0.001) TCGA-32-2495-01 2 187368763 187368763 G A ZC3H15 Missense_Mutation p.C180Y 0.43 deleterious(0) probably_damaging(0.999) TCGA-32-2495-01 2 197521487 197521487 C T CCDC150 Nonsense_Mutation p.R103* 0.31 TCGA-32-2495-01 2 47748523 47748523 G A KCNK12 Silent p.N272N 0.12 TCGA-32-2495-01 2 50280492 50280492 T G NRXN1 Missense_Mutation p.T1389P 0.39 tolerated(0.09) probably_damaging(0.921) TCGA-32-2495-01 2 69747212 69747212 T G AAK1 Intron 0.42 TCGA-32-2495-01 3 108179152 108179152 G C MYH15 Missense_Mutation p.H663D 0.09 deleterious(0.01) probably_damaging(0.999) TCGA-32-2495-01 3 122514299 122514299 G A DIRC2 Missense_Mutation p.S87N 0.58 tolerated(0.58) benign(0.004) TCGA-32-2495-01 3 150321196 150321196 G A SELT Missense_Mutation p.R16Q 0.08 tolerated(0.68) benign(0) TCGA-32-2495-01 3 178916614 178916614 A G PIK3CA Translation_Start_Site p.M1? 0.35 deleterious_low_confidence(0) possibly_damaging(0.824) TCGA-32-2495-01 3 27233608 27233608 T G NEK10 Missense_Mutation p.E806A 0.35 deleterious(0.01) benign(0.376) TCGA-32-2495-01 3 45153846 45153846 A G CDCP1 Silent p.D128D 0.42 TCGA-32-2495-01 4 159753113 159753113 G T FNIP2 Missense_Mutation p.R161L 0.07 deleterious(0) probably_damaging(0.989) TCGA-32-2495-01 4 680439 680439 T C MFSD7 Missense_Mutation p.E59G 0.37 tolerated(0.1) benign(0.037) TCGA-32-2495-01 4 70513056 70513056 T C UGT2A1 Missense_Mutation p.T103A 0.41 tolerated(0.12) possibly_damaging(0.823) TCGA-32-2495-01 4 9784960 9784960 G A DRD5 Missense_Mutation p.R436H 0.45 tolerated(0.16) benign(0.009) TCGA-32-2495-01 5 131296260 131296260 G A ACSL6 Nonsense_Mutation p.Q638* 0.64 TCGA-32-2495-01 5 145442366 145442366 G T SH3RF2 Intron 0.39 TCGA-32-2495-01 5 33751608 33751608 C T ADAMTS12 Missense_Mutation p.V179M 0.51 deleterious(0.01) possibly_damaging(0.899) TCGA-32-2495-01 6 137041637 137041637 T C MAP3K5 Missense_Mutation p.N180S 0.08 deleterious(0.02) probably_damaging(0.996) TCGA-32-2495-01 6 30126240 30126240 C T TRIM10 Missense_Mutation p.R231Q 0.79 deleterious(0.04) probably_damaging(0.997) TCGA-32-2495-01 6 31742303 31742303 C A VWA7 Silent p.P237P 0.06 TCGA-32-2495-01 6 32797852 32797852 C T TAP2 Silent p.G550G 0.28 TCGA-32-2495-01 6 49700907 49700907 C T CRISP3 Splice_Site p.X197_splice 0.75 TCGA-32-2495-01 7 101176361 101176361 A T COL26A1 Splice_Site p.X129_splice 0.12 TCGA-32-2495-01 7 116340174 116340174 T C MET Missense_Mutation p.F346L 0.27 deleterious(0) probably_damaging(0.99) TCGA-32-2495-01 7 116340270 116340270 G A MET Missense_Mutation p.V378I 0.31 tolerated(0.53) probably_damaging(0.994) TCGA-32-2495-01 7 150645539 150645539 C T KCNH2 Silent p.T895T 0.07 TCGA-32-2495-01 7 38725419 38725419 C T FAM183B Missense_Mutation p.A63T 0.47 tolerated(0.16) benign(0.213) TCGA-32-2495-01 7 42005081 42005081 A G GLI3 Missense_Mutation p.M1197T 0.08 tolerated_low_confidence(0.14) benign(0.002) TCGA-32-2495-01 7 97822800 97822800 C T LMTK2 Missense_Mutation p.A1008V 0.28 tolerated(0.51) benign(0.002) TCGA-32-2495-01 8 103297923 103297923 C G UBR5 Missense_Mutation p.A1768P 0.39 tolerated(0.35) probably_damaging(0.991) TCGA-32-2495-01 8 24775127 24775127 A G NEFM Missense_Mutation p.K587E 0.47 tolerated(0.16) unknown(0) TCGA-32-2495-01 X 110494471 110494471 G C CAPN6 Missense_Mutation p.L313V 0.54 tolerated(0.06) possibly_damaging(0.874) TCGA-32-2495-01 X 122538688 122538688 G A GRIA3 Missense_Mutation p.V475I 0.54 deleterious(0.03) benign(0.106) TCGA-32-2495-01 X 12736450 12736450 G A FRMPD4 Missense_Mutation p.A1169T 0.47 tolerated_low_confidence(0.57) benign(0.003) TCGA-32-2495-01 X 153694760 153694760 G A PLXNA3 Silent p.A947A 0.56 TCGA-32-2495-01 X 36091481 36091481 G T CHDC2 Missense_Mutation p.R139M 0.50 deleterious(0) probably_damaging(0.999) TCGA-32-2495-01 X 53571567 53571567 G A HUWE1 Silent p.D3735D 0.55 TCGA-32-2495-01 X 67331781 67331781 G A OPHN1 Missense_Mutation p.R481C 0.52 deleterious(0) probably_damaging(0.999) TCGA-32-2615-01 10 105005758 105005758 C T RPEL1 Missense_Mutation p.A2V 0.70 deleterious(0.01) benign(0.013) TCGA-32-2615-01 10 5238864 5238864 G A AKR1C4 Missense_Mutation p.D12N 0.11 tolerated(0.05) probably_damaging(0.942) TCGA-32-2615-01 10 8006394 8006394 A G TAF3 Silent p.K307K 0.07 TCGA-32-2615-01 10 88419055 88419055 C T OPN4 Silent p.S221S 0.63 TCGA-32-2615-01 11 10647541 10647541 C G MRVI1 Missense_Mutation p.R447P 0.21 deleterious(0.01) probably_damaging(0.995) TCGA-32-2615-01 11 113853896 113853896 C T HTR3A Silent p.G149G 0.30 TCGA-32-2615-01 12 113435338 113435338 T A OAS2 Missense_Mutation p.I214N 0.07 tolerated(0.37) benign(0) TCGA-32-2615-01 12 132379629 132379629 C T ULK1 Missense_Mutation p.A28V 0.44 deleterious(0) benign(0.408) TCGA-32-2615-01 12 39155951 39155951 T A CPNE8 Missense_Mutation p.I215F 0.36 deleterious(0.02) benign(0.023) TCGA-32-2615-01 12 39726188 39726188 C A KIF21A Missense_Mutation p.R960I 0.40 tolerated(0.15) possibly_damaging(0.542) TCGA-32-2615-01 12 66838466 66838466 C T GRIP1 Missense_Mutation p.G477R 0.42 deleterious(0.01) probably_damaging(0.939) TCGA-32-2615-01 13 70314591 70314591 T C KLHL1 Silent p.Q579Q 0.40 TCGA-32-2615-01 14 23778280 23778280 G C BCL2L2 3'UTR 0.12 TCGA-32-2615-01 14 38723832 38723832 C A CLEC14A Missense_Mutation p.V466F 0.69 tolerated_low_confidence(0.21) benign(0.325) TCGA-32-2615-01 17 38245646 38245646 C - THRA Intron 0.36 TCGA-32-2615-01 17 76482406 76482406 G A DNAH17 Missense_Mutation p.T2320M 0.38 possibly_damaging(0.761) TCGA-32-2615-01 19 10678076 10678076 G A CDKN2D Silent p.S53S 0.24 TCGA-32-2615-01 19 16025181 16025181 C T CYP4F11 Missense_Mutation p.R444H 0.46 deleterious(0) possibly_damaging(0.874) TCGA-32-2615-01 19 20748486 20748486 A C ZNF737 5'UTR 0.05 TCGA-32-2615-01 19 48342915 48342915 G A CRX Silent p.P197P 0.43 TCGA-32-2615-01 1 116666896 116666896 C T MAB21L3 Silent p.I133I 0.54 TCGA-32-2615-01 20 42979302 42979302 G A R3HDML Missense_Mutation p.G211D 0.40 deleterious(0.01) possibly_damaging(0.799) TCGA-32-2615-01 22 43831125 43831125 C T MPPED1 Silent p.N132N 0.61 TCGA-32-2615-01 2 137988734 137988734 A C THSD7B Missense_Mutation p.Q615P 0.43 deleterious(0.05) possibly_damaging(0.506) TCGA-32-2615-01 2 1480946 1480946 C T TPO Missense_Mutation p.A303V 0.33 tolerated(0.2) benign(0.076) TCGA-32-2615-01 2 21233706 21233706 G A APOB Nonsense_Mutation p.R2012* 0.39 TCGA-32-2615-01 2 242169605 242169605 T C HDLBP Missense_Mutation p.E1185G 0.25 deleterious(0.04) benign(0.071) TCGA-32-2615-01 3 109046840 109046840 C T DPPA4 Missense_Mutation p.E304K 0.30 deleterious_low_confidence(0.04) benign(0.143) TCGA-32-2615-01 3 52828907 52828907 C T ITIH3 Missense_Mutation p.L30F 0.50 tolerated(0.41) benign(0.008) TCGA-32-2615-01 4 13605551 13605551 T C BOD1L1 Silent p.R991R 0.44 TCGA-32-2615-01 4 152680061 152680061 C T PET112 Missense_Mutation p.A64T 0.36 tolerated(0.38) benign(0.021) TCGA-32-2615-01 4 77069476 77069476 T G NUP54 Missense_Mutation p.T18P 0.21 deleterious(0.02) unknown(0) TCGA-32-2615-01 5 137803130 137803130 C T EGR1 Missense_Mutation p.T331M 0.41 deleterious(0.01) unknown(0) TCGA-32-2615-01 5 140181750 140181750 C T PCDHA3 Missense_Mutation p.T323M 0.40 tolerated_low_confidence(0.06) possibly_damaging(0.466) TCGA-32-2615-01 5 145428731 145428731 C T SH3RF2 Silent p.D415D 0.32 TCGA-32-2615-01 6 27216987 27216987 G A PRSS16 Missense_Mutation p.R149H 0.23 deleterious(0.01) benign(0.117) TCGA-32-2615-01 6 29080293 29080293 T C OR2J3 Missense_Mutation p.F209S 0.38 deleterious(0) possibly_damaging(0.886) TCGA-32-2615-01 6 43325085 43325085 G A ZNF318 Nonsense_Mutation p.R323* 0.46 TCGA-32-2615-01 6 76782168 76782169 - A IMPG1 Frame_Shift_Ins p.W13Lfs*15 0.44 TCGA-32-2615-01 7 128612562 128612562 G A TNPO3 Missense_Mutation p.S783F 0.10 deleterious(0) benign(0.212) TCGA-32-2615-01 7 139746776 139746776 C T PARP12 Silent p.P298P 0.51 TCGA-32-2615-01 7 144097327 144097327 G A NOBOX Missense_Mutation p.T308M 0.36 tolerated(0.38) benign(0.103) TCGA-32-2615-01 7 44147488 44147488 C A AEBP1 Missense_Mutation p.P274T 0.15 deleterious_low_confidence(0.01) benign(0.169) TCGA-32-2615-01 8 145624369 145624369 G A CPSF1 Silent p.N509N 0.50 TCGA-32-2615-01 8 24813760 24813760 C T CTD-2168K21.2 5'Flank 0.17 TCGA-32-2615-01 8 56270319 56270319 A G XKR4 Silent p.V296V 0.15 TCGA-32-2615-01 9 133342180 133342180 C T ASS1 Silent p.Y163Y 0.39 TCGA-32-2615-01 X 136649606 136649606 G A ZIC3 Silent p.S252S 0.81 TCGA-32-2615-01 X 1712915 1712915 T C AKAP17A Missense_Mutation p.V187A 0.08 deleterious(0) possibly_damaging(0.827) TCGA-32-2616-01 10 102058434 102058434 G A PKD2L1 Missense_Mutation p.R206C 0.39 deleterious(0.01) probably_damaging(0.953) TCGA-32-2616-01 10 102743518 102743518 G A MRPL43 Nonsense_Mutation p.R217* 0.20 TCGA-32-2616-01 10 102750661 102750661 G A C10orf2 Missense_Mutation p.R543Q 0.34 deleterious(0) probably_damaging(0.934) TCGA-32-2616-01 10 103534490 103534490 G A FGF8 Silent p.F112F 0.29 TCGA-32-2616-01 10 105006424 105006424 G A RPEL1 Missense_Mutation p.R224H 0.30 tolerated(0.07) benign(0) TCGA-32-2616-01 10 105363058 105363058 G A SH3PXD2A Silent p.S611S 0.30 TCGA-32-2616-01 10 106207547 106207547 C T CCDC147 Missense_Mutation p.T783M 0.33 deleterious(0.01) benign(0.047) TCGA-32-2616-01 10 11363221 11363221 C T CELF2 Missense_Mutation p.T389M 0.35 deleterious(0.04) benign(0.283) TCGA-32-2616-01 10 116075394 116075394 G A AFAP1L2 Silent p.C179C 0.27 TCGA-32-2616-01 10 116075475 116075475 G A AFAP1L2 Silent p.D152D 0.49 TCGA-32-2616-01 10 117075225 117075225 T C ATRNL1 Missense_Mutation p.W1006R 0.41 deleterious(0) probably_damaging(1) TCGA-32-2616-01 10 117884958 117884958 C T GFRA1 Missense_Mutation p.V182M 0.44 tolerated(0.22) benign(0.072) TCGA-32-2616-01 10 123781476 123781476 C T TACC2 5'UTR 0.38 TCGA-32-2616-01 10 123954681 123954681 G A TACC2 Silent p.P1987P 0.59 TCGA-32-2616-01 10 125447465 125447465 C T GPR26 Missense_Mutation p.T268M 0.36 tolerated(0.22) benign(0.329) TCGA-32-2616-01 10 126686552 126686552 C T CTBP2 Silent p.T722T 0.42 TCGA-32-2616-01 10 128798550 128798550 C T DOCK1 Missense_Mutation p.R322W 0.44 deleterious(0) possibly_damaging(0.689) TCGA-32-2616-01 10 128821517 128821517 G T DOCK1 Nonsense_Mutation p.G440* 0.38 TCGA-32-2616-01 10 128841428 128841428 C T DOCK1 Missense_Mutation p.T713M 0.38 tolerated(0.1) benign(0.028) TCGA-32-2616-01 10 13322988 13322988 G A PHYH Silent p.S317S 0.04 TCGA-32-2616-01 10 134623932 134623932 G A TTC40 Nonsense_Mutation p.R2549* 0.38 TCGA-32-2616-01 10 14943184 14943184 G A SUV39H2 Missense_Mutation p.R350H 0.34 deleterious(0.01) benign(0.01) TCGA-32-2616-01 10 15161355 15161355 G A NMT2 Missense_Mutation p.T386M 0.36 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 10 16528529 16528529 G A PTER Missense_Mutation p.R204Q 0.34 deleterious(0.01) benign(0.377) TCGA-32-2616-01 10 27702997 27702997 C T PTCHD3 Silent p.A61A 0.43 TCGA-32-2616-01 10 29822072 29822072 C T SVIL Silent p.T408T 0.32 TCGA-32-2616-01 10 32581987 32581987 G A EPC1 Nonsense_Mutation p.R199* 0.54 TCGA-32-2616-01 10 35327866 35327866 G A CUL2 Nonsense_Mutation p.R306* 0.32 TCGA-32-2616-01 10 430077 430077 G A DIP2C Missense_Mutation p.A589V 0.35 deleterious(0.04) probably_damaging(0.997) TCGA-32-2616-01 10 43319172 43319172 G A BMS1 Silent p.T1132T 0.08 TCGA-32-2616-01 10 460020 460020 G A DIP2C Missense_Mutation p.P297L 0.40 deleterious(0.01) possibly_damaging(0.552) TCGA-32-2616-01 10 46961953 46961953 C T SYT15 3'UTR 0.13 TCGA-32-2616-01 10 47087161 47087161 G A NPY4R Silent p.T126T 0.12 TCGA-32-2616-01 10 48388050 48388050 G A RBP3 Missense_Mutation p.T943M 0.33 tolerated(0.1) possibly_damaging(0.791) TCGA-32-2616-01 10 48388258 48388258 C T RBP3 Missense_Mutation p.G874R 0.37 deleterious(0) probably_damaging(0.989) TCGA-32-2616-01 10 49663167 49663167 C T ARHGAP22 Missense_Mutation p.V240M 0.32 deleterious(0) probably_damaging(0.994) TCGA-32-2616-01 10 5043871 5043871 A G AKR1C2 Silent p.V29V 0.06 TCGA-32-2616-01 10 6063525 6063525 C T IL2RA Missense_Mutation p.V167I 0.37 tolerated(0.59) benign(0.011) TCGA-32-2616-01 10 6257246 6257246 C T PFKFB3 Missense_Mutation p.R89C 0.27 probably_damaging(0.924) TCGA-32-2616-01 10 72468410 72468410 G A ADAMTS14 Missense_Mutation p.R249Q 0.33 deleterious(0.03) probably_damaging(0.999) TCGA-32-2616-01 10 7605141 7605141 C T ITIH5 Missense_Mutation p.A912T 0.28 tolerated(0.08) possibly_damaging(0.883) TCGA-32-2616-01 10 8111459 8111459 G A GATA3 Silent p.T316T 0.36 TCGA-32-2616-01 10 82363350 82363350 C T SH2D4B Missense_Mutation p.A220V 0.83 deleterious(0.02) benign(0.168) TCGA-32-2616-01 10 859112 859112 C T LARP4B Silent p.T657T 0.31 TCGA-32-2616-01 10 88753182 88753182 G A AGAP11 RNA 0.36 TCGA-32-2616-01 10 89717712 89717712 C T PTEN Missense_Mutation p.P246L 0.09 tolerated(0.06) benign(0.132) TCGA-32-2616-01 10 91533780 91533780 G A KIF20B Missense_Mutation p.R1773Q 0.34 deleterious(0.03) possibly_damaging(0.857) TCGA-32-2616-01 10 93773528 93773528 T A BTAF1 Missense_Mutation p.S1472R 0.35 deleterious(0) probably_damaging(0.994) TCGA-32-2616-01 10 95399865 95399865 C T PDE6C Silent p.Y507Y 0.40 TCGA-32-2616-01 10 96234438 96234438 G A TBC1D12 Missense_Mutation p.R370Q 0.34 deleterious(0.02) possibly_damaging(0.491) TCGA-32-2616-01 10 97101393 97101393 C T SORBS1 Silent p.K824K 0.32 TCGA-32-2616-01 10 98133439 98133439 G A TLL2 Missense_Mutation p.T859M 0.37 deleterious(0.03) benign(0.048) TCGA-32-2616-01 10 99655149 99655149 G A CRTAC1 Nonsense_Mutation p.R447* 0.33 TCGA-32-2616-01 11 101375149 101375149 G A TRPC6 Missense_Mutation p.P184L 0.41 deleterious(0.01) probably_damaging(1) TCGA-32-2616-01 11 103907434 103907434 G A DDI1 5'UTR 0.08 TCGA-32-2616-01 11 10624672 10624672 G A MRVI1 Missense_Mutation p.R624C 0.56 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 11 1094855 1094855 C T MUC2 Silent p.Y1981Y 0.27 TCGA-32-2616-01 11 111626164 111626164 C T PPP2R1B Missense_Mutation p.R233H 0.37 deleterious(0) probably_damaging(1) TCGA-32-2616-01 11 113650533 113650533 C T CLDN25 Missense_Mutation p.R6C 0.34 deleterious(0.03) benign(0.022) TCGA-32-2616-01 11 117374594 117374594 G A DSCAML1 Silent p.T835T 0.41 TCGA-32-2616-01 11 118403725 118403725 C T TMEM25 Missense_Mutation p.P159L 0.41 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 11 118925897 118925897 G A HYOU1 Missense_Mutation p.S140L 0.32 tolerated(0.12) benign(0.003) TCGA-32-2616-01 11 118944012 118944012 T C VPS11 Missense_Mutation p.V329A 0.30 tolerated(0.1) possibly_damaging(0.661) TCGA-32-2616-01 11 118944014 118944014 G T VPS11 Missense_Mutation p.V330L 0.31 tolerated(0.73) benign(0.009) TCGA-32-2616-01 11 119025595 119025595 C T ABCG4 Missense_Mutation p.P219L 0.36 deleterious(0.01) probably_damaging(0.967) TCGA-32-2616-01 11 119216863 119216863 C T MFRP Missense_Mutation p.R55H 0.33 tolerated(0.23) benign(0.002) TCGA-32-2616-01 11 11963899 11963899 C T USP47 Silent p.S709S 0.32 TCGA-32-2616-01 11 121008283 121008283 C T TECTA Missense_Mutation p.T1032M 0.32 deleterious(0) benign(0.339) TCGA-32-2616-01 11 123448232 123448232 G A GRAMD1B Missense_Mutation p.V61M 0.55 tolerated(0.08) probably_damaging(0.999) TCGA-32-2616-01 11 126294582 126294582 C T KIRREL3 Missense_Mutation p.D744N 0.36 deleterious(0) probably_damaging(0.993) TCGA-32-2616-01 11 133790972 133790972 G A IGSF9B Missense_Mutation p.T883M 0.60 deleterious(0.02) possibly_damaging(0.855) TCGA-32-2616-01 11 133814229 133814229 G A IGSF9B Missense_Mutation p.R99W 0.76 deleterious(0.02) probably_damaging(0.986) TCGA-32-2616-01 11 1467072 1467072 C T BRSK2 Silent p.S433S 0.34 TCGA-32-2616-01 11 15212347 15212347 G A INSC Missense_Mutation p.R274H 0.44 tolerated(0.42) benign(0.081) TCGA-32-2616-01 11 1605613 1605613 G A KRTAP5-1 3'UTR 0.39 TCGA-32-2616-01 11 18158918 18158918 C T MRGPRX3 Missense_Mutation p.R57C 0.30 deleterious(0.03) benign(0.12) TCGA-32-2616-01 11 18636887 18636887 C T SPTY2D1 Missense_Mutation p.A312T 0.33 tolerated(0.55) benign(0.002) TCGA-32-2616-01 11 18729505 18729505 G A IGSF22 Silent p.G1042G 0.22 TCGA-32-2616-01 11 18735649 18735649 G A IGSF22 Silent p.H615H 0.26 TCGA-32-2616-01 11 2181051 2181051 C T INS 3'UTR 0.27 TCGA-32-2616-01 11 32956926 32956926 C T QSER1 Silent p.S1245S 0.33 TCGA-32-2616-01 11 33076259 33076259 T C TCP11L1 Missense_Mutation p.L95S 0.03 deleterious(0.01) probably_damaging(0.98) TCGA-32-2616-01 11 34098006 34098006 G A CAPRIN1 Missense_Mutation p.R197Q 0.38 deleterious(0) benign(0.295) TCGA-32-2616-01 11 35327732 35327732 C T SLC1A2 Missense_Mutation p.A207T 0.33 tolerated(0.7) benign(0.002) TCGA-32-2616-01 11 3707393 3707393 G A NUP98 Nonsense_Mutation p.R1496* 0.35 TCGA-32-2616-01 11 44286450 44286450 C T ALX4 Missense_Mutation p.R397H 0.46 deleterious(0) probably_damaging(0.995) TCGA-32-2616-01 11 44296903 44296903 C T ALX4 Missense_Mutation p.V258M 0.42 deleterious(0) possibly_damaging(0.898) TCGA-32-2616-01 11 45955484 45955484 G A PHF21A 3'UTR 0.47 TCGA-32-2616-01 11 56086142 56086142 C T OR8K3 Silent p.Y120Y 0.38 TCGA-32-2616-01 11 56230565 56230565 C T OR5M9 Missense_Mutation p.V105I 0.43 deleterious(0.01) benign(0.007) TCGA-32-2616-01 11 56510657 56510657 C T OR9G4 Missense_Mutation p.E211K 0.32 deleterious(0.05) possibly_damaging(0.689) TCGA-32-2616-01 11 57069624 57069624 C T TNKS1BP1 Silent p.P1586P 0.31 TCGA-32-2616-01 11 57080392 57080392 G A TNKS1BP1 Silent p.Y590Y 0.07 TCGA-32-2616-01 11 5776469 5776469 C T OR52N4 Missense_Mutation p.L167F 0.29 deleterious(0) benign(0) TCGA-32-2616-01 11 60689377 60689377 C T TMEM109 Missense_Mutation p.R158W 0.42 tolerated(0.07) probably_damaging(1) TCGA-32-2616-01 11 61017154 61017154 G A PGA5 Missense_Mutation p.G263R 0.25 deleterious(0) probably_damaging(0.974) TCGA-32-2616-01 11 61105514 61105514 C T DAK Silent p.R35R 0.20 TCGA-32-2616-01 11 62346221 62346221 C T TUT1 Silent p.S362S 0.35 TCGA-32-2616-01 11 62476441 62476441 C T GNG3 3'UTR 0.28 TCGA-32-2616-01 11 62543327 62543327 G A TAF6L Silent p.T24T 0.40 TCGA-32-2616-01 11 6281208 6281208 C T CCKBR Missense_Mutation p.P17L 0.33 tolerated_low_confidence(0.19) benign(0.001) TCGA-32-2616-01 11 63671611 63671611 G A MARK2 Silent p.P556P 0.44 TCGA-32-2616-01 11 63885079 63885079 C T FLRT1 Missense_Mutation p.T447M 0.31 deleterious(0.01) possibly_damaging(0.888) TCGA-32-2616-01 11 64024011 64024011 C T PLCB3 Nonsense_Mutation p.R288* 0.35 TCGA-32-2616-01 11 64026676 64026676 C T PLCB3 Silent p.S495S 0.60 TCGA-32-2616-01 11 64394000 64394000 G A NRXN2 Missense_Mutation p.A1261V 0.42 tolerated(0.07) benign(0.307) TCGA-32-2616-01 11 64559744 64559744 C T MAP4K2 Missense_Mutation p.R605Q 0.31 deleterious(0.04) benign(0.153) TCGA-32-2616-01 11 64699315 64699315 G A PPP2R5B Missense_Mutation p.R364H 0.49 deleterious(0) benign(0.342) TCGA-32-2616-01 11 6478096 6478096 G A TRIM3 Missense_Mutation p.P287L 0.33 deleterious(0.01) benign(0.329) TCGA-32-2616-01 11 64892044 64892044 G A MRPL49 Missense_Mutation p.R50H 0.39 deleterious(0) benign(0.057) TCGA-32-2616-01 11 65172462 65172462 G A FRMD8 Missense_Mutation p.R400H 0.34 deleterious(0.02) possibly_damaging(0.591) TCGA-32-2616-01 11 65178764 65178764 G A FRMD8 Missense_Mutation p.R443Q 0.35 deleterious_low_confidence(0) possibly_damaging(0.853) TCGA-32-2616-01 11 65347921 65347921 C T EHBP1L1 Missense_Mutation p.P202L 0.37 tolerated(0.12) benign(0.42) TCGA-32-2616-01 11 65998407 65998407 C T PACS1 Missense_Mutation p.T541M 0.28 tolerated(0.15) possibly_damaging(0.701) TCGA-32-2616-01 11 66062570 66062570 G A TMEM151A Missense_Mutation p.A285T 0.24 tolerated(0.22) benign(0.312) TCGA-32-2616-01 11 66330285 66330285 C T CTSF 3'Flank 0.29 TCGA-32-2616-01 11 66332364 66332364 C T CTSF Missense_Mutation p.E387K 0.42 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 11 66460094 66460094 G A SPTBN2 Silent p.R1701R 0.42 TCGA-32-2616-01 11 67050601 67050601 C T ADRBK1 Silent p.A410A 0.33 TCGA-32-2616-01 11 67059113 67059113 G A ANKRD13D Missense_Mutation p.R146H 0.36 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 11 67265688 67265688 G A PITPNM1 Silent p.G530G 0.39 TCGA-32-2616-01 11 67789061 67789061 G A ALDH3B1 Missense_Mutation p.D223N 0.31 tolerated(0.19) benign(0.046) TCGA-32-2616-01 11 68206070 68206070 C T LRP5 Missense_Mutation p.P1423L 0.43 tolerated(0.08) benign(0.217) TCGA-32-2616-01 11 68675621 68675621 G A IGHMBP2 Missense_Mutation p.V89M 0.39 deleterious(0) probably_damaging(0.98) TCGA-32-2616-01 11 702945 702945 G A TMEM80 Missense_Mutation p.G101D 0.36 deleterious(0) probably_damaging(1) TCGA-32-2616-01 11 71847081 71847081 G A FOLR3 Missense_Mutation p.R28Q 0.23 tolerated(0.31) benign(0.001) TCGA-32-2616-01 11 73789725 73789725 G A C2CD3 Silent p.D1346D 0.39 TCGA-32-2616-01 11 74876978 74876978 C T SLCO2B1 Silent p.Y144Y 0.38 TCGA-32-2616-01 11 7531549 7531549 G A OLFML1 3'UTR 0.30 TCGA-32-2616-01 11 76227277 76227277 G A C11orf30 Silent p.T535T 0.36 TCGA-32-2616-01 11 76372129 76372129 G A LRRC32 Missense_Mutation p.R170W 0.35 tolerated(0.3) benign(0.009) TCGA-32-2616-01 11 76924953 76924953 G A MYO7A Missense_Mutation p.G2163S 0.30 deleterious(0.01) probably_damaging(1) TCGA-32-2616-01 11 77921177 77921177 G A USP35 Missense_Mutation p.R759H 0.34 tolerated(0.13) probably_damaging(0.999) TCGA-32-2616-01 11 77961221 77961221 C T GAB2 Missense_Mutation p.R201Q 0.40 tolerated(0.34) benign(0.029) TCGA-32-2616-01 11 800232 800232 G A PIDD Missense_Mutation p.R725C 0.39 deleterious(0) probably_damaging(1) TCGA-32-2616-01 11 811761 811761 C T RPLP2 Intron 0.28 TCGA-32-2616-01 12 102158081 102158081 C T GNPTAB Missense_Mutation p.V872I 0.27 tolerated(0.21) benign(0.001) TCGA-32-2616-01 12 10332183 10332183 C T TMEM52B 5'UTR 0.28 TCGA-32-2616-01 12 104390524 104390524 C T GLT8D2 Missense_Mutation p.V197M 0.41 tolerated(0.12) possibly_damaging(0.888) TCGA-32-2616-01 12 10532046 10532046 C T KLRK1 Missense_Mutation p.E93K 0.26 tolerated(0.09) benign(0.171) TCGA-32-2616-01 12 105601946 105601946 G A APPL2 Silent p.L135L 0.36 TCGA-32-2616-01 12 106633251 106633251 G A CKAP4 Missense_Mutation p.R454C 0.35 deleterious(0.03) probably_damaging(0.931) TCGA-32-2616-01 12 108919996 108919996 G A SART3 Silent p.Y750Y 0.31 TCGA-32-2616-01 12 109332675 109332675 G A SVOP Silent p.I210I 0.29 TCGA-32-2616-01 12 109647063 109647063 C T ACACB Missense_Mutation p.R1052C 0.40 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 12 109660343 109660343 C T ACACB Missense_Mutation p.S1199L 0.36 deleterious(0.03) benign(0.327) TCGA-32-2616-01 12 109826595 109826595 C T MYO1H Silent p.S24S 0.35 TCGA-32-2616-01 12 109889533 109889533 G A KCTD10 Missense_Mutation p.A270V 0.29 tolerated(0.26) probably_damaging(0.97) TCGA-32-2616-01 12 109935664 109935664 C T UBE3B Missense_Mutation p.P252L 0.28 tolerated(0.95) benign(0) TCGA-32-2616-01 12 109971338 109971338 G A UBE3B Missense_Mutation p.R997H 0.44 deleterious(0) probably_damaging(0.995) TCGA-32-2616-01 12 111776095 111776095 C T CUX2 Missense_Mutation p.R1068W 0.30 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 12 112097125 112097125 C T BRAP Missense_Mutation p.G333S 0.04 deleterious(0.01) probably_damaging(0.998) TCGA-32-2616-01 12 112230431 112230431 G A ALDH2 Missense_Mutation p.A310T 0.49 deleterious(0.01) probably_damaging(0.993) TCGA-32-2616-01 12 113543595 113543595 G A RASAL1 Missense_Mutation p.T586M 0.39 tolerated(0.29) possibly_damaging(0.88) TCGA-32-2616-01 12 1137358 1137358 C T ERC1 Missense_Mutation p.R97C 0.35 deleterious(0) possibly_damaging(0.776) TCGA-32-2616-01 12 113822692 113822692 G A PLBD2 Silent p.A385A 0.35 TCGA-32-2616-01 12 114282555 114282555 G A RBM19 Silent p.Y901Y 0.32 TCGA-32-2616-01 12 114296599 114296599 C T RBM19 Silent p.A887A 0.06 TCGA-32-2616-01 12 114400176 114400176 G A RBM19 Missense_Mutation p.T27M 0.39 deleterious(0) probably_damaging(0.995) TCGA-32-2616-01 12 119540116 119540116 C T SRRM4 Silent p.T69T 0.06 TCGA-32-2616-01 12 120152083 120152083 C T CIT Missense_Mutation p.V1409I 0.05 tolerated(0.21) benign(0.269) TCGA-32-2616-01 12 121093961 121093961 C T CABP1 Intron 0.53 TCGA-32-2616-01 12 122693101 122693101 C T DIABLO Missense_Mutation p.A183T 0.23 tolerated(0.09) benign(0.186) TCGA-32-2616-01 12 123338619 123338619 G A HIP1R Missense_Mutation p.V203I 0.40 tolerated(0.13) benign(0.079) TCGA-32-2616-01 12 123829802 123829802 T C SBNO1 Intron 0.33 TCGA-32-2616-01 12 124212341 124212341 G A ATP6V0A2 Missense_Mutation p.G178D 0.40 deleterious(0) probably_damaging(1) TCGA-32-2616-01 12 124325995 124325995 G A DNAH10 Missense_Mutation p.V1637M 0.50 probably_damaging(0.999) TCGA-32-2616-01 12 124383212 124383212 G A DNAH10 Missense_Mutation p.R3046H 0.45 possibly_damaging(0.751) TCGA-32-2616-01 12 125420049 125420049 C T RPL22P19 RNA 0.28 TCGA-32-2616-01 12 125434767 125434767 G A DHX37 Silent p.P1048P 0.30 TCGA-32-2616-01 12 125441343 125441343 G A DHX37 Missense_Mutation p.R783C 0.31 deleterious(0.04) possibly_damaging(0.735) TCGA-32-2616-01 12 12815140 12815140 G A GPR19 Silent p.F81F 0.07 TCGA-32-2616-01 12 12978974 12978974 G A DDX47 Missense_Mutation p.R359H 0.40 deleterious(0) benign(0.268) TCGA-32-2616-01 12 131360318 131360318 C T RAN Silent p.H199H 0.31 TCGA-32-2616-01 12 132508472 132508472 C T EP400 Missense_Mutation p.P1614L 0.34 unknown(0) TCGA-32-2616-01 12 132512735 132512735 C T EP400 Silent p.A1761A 0.05 TCGA-32-2616-01 12 132562076 132562076 C T EP400 Missense_Mutation p.A3077V 0.31 probably_damaging(0.997) TCGA-32-2616-01 12 133294683 133294683 C T PGAM5 Silent p.N232N 0.47 TCGA-32-2616-01 12 133360642 133360642 G A GOLGA3 Intron 0.33 TCGA-32-2616-01 12 13716833 13716833 C T GRIN2B Silent p.P1113P 0.29 TCGA-32-2616-01 12 14577273 14577273 G A ATF7IP Missense_Mutation p.G142R 0.32 tolerated_low_confidence(0.19) benign(0.007) TCGA-32-2616-01 12 15747954 15747954 C T PTPRO Silent p.Y1210Y 0.33 TCGA-32-2616-01 12 21014051 21014051 T A SLCO1B3 Missense_Mutation p.S154T 0.34 tolerated(0.07) possibly_damaging(0.677) TCGA-32-2616-01 12 248073 248073 C T IQSEC3 Missense_Mutation p.T515M 0.31 tolerated(0.11) benign(0.127) TCGA-32-2616-01 12 266295 266295 G A IQSEC3 Missense_Mutation p.R753Q 0.35 deleterious(0) probably_damaging(0.968) TCGA-32-2616-01 12 27077408 27077408 C T ASUN Silent p.P228P 0.38 TCGA-32-2616-01 12 27143430 27143430 G A TM7SF3 Missense_Mutation p.T274I 0.36 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 12 27234970 27234970 G A C12orf71 Silent p.D149D 0.32 TCGA-32-2616-01 12 2977809 2977809 G A FOXM1 Missense_Mutation p.R256C 0.33 deleterious(0) possibly_damaging(0.891) TCGA-32-2616-01 12 31820696 31820696 C T METTL20 Silent p.G187G 0.34 TCGA-32-2616-01 12 31850808 31850808 C T AMN1 Missense_Mutation p.V134I 0.45 tolerated(0.39) benign(0.012) TCGA-32-2616-01 12 32134130 32134130 G A KIAA1551 Missense_Mutation p.G81R 0.31 tolerated(1) possibly_damaging(0.548) TCGA-32-2616-01 12 4479711 4479711 G A FGF23 Missense_Mutation p.S185L 0.34 tolerated(0.36) benign(0) TCGA-32-2616-01 12 47172285 47172285 C T SLC38A4 Missense_Mutation p.R331Q 0.30 tolerated(1) benign(0.017) TCGA-32-2616-01 12 4835984 4835984 G A GALNT8 Silent p.T166T 0.31 TCGA-32-2616-01 12 48368072 48368072 C T COL2A1 Missense_Mutation p.V1373I 0.48 unknown(0) TCGA-32-2616-01 12 49447863 49447863 G A KMT2D Missense_Mutation p.R191W 0.34 unknown(0) TCGA-32-2616-01 12 49959948 49959948 G A MCRS1 Missense_Mutation p.R34C 0.38 deleterious_low_confidence(0) probably_damaging(0.966) TCGA-32-2616-01 12 50188707 50188707 C T NCKAP5L Missense_Mutation p.R979H 0.33 tolerated(0.07) probably_damaging(0.999) TCGA-32-2616-01 12 50392972 50392972 C T RACGAP1 Silent p.T277T 0.40 TCGA-32-2616-01 12 50501452 50501452 G A GPD1 Missense_Mutation p.A239T 0.42 tolerated(0.1) benign(0.016) TCGA-32-2616-01 12 51757996 51757996 G A GALNT6 Nonsense_Mutation p.R320* 0.38 TCGA-32-2616-01 12 52470726 52470726 C T C12orf44 Missense_Mutation p.R137W 0.36 deleterious(0) benign(0.079) TCGA-32-2616-01 12 52629105 52629105 C T KRT7 Missense_Mutation p.A164V 0.30 tolerated(0.39) benign(0.007) TCGA-32-2616-01 12 52711732 52711732 G A KRT83 Nonsense_Mutation p.R206* 0.32 TCGA-32-2616-01 12 52760975 52760975 C T KRT85 Missense_Mutation p.R72Q 0.33 tolerated(0.07) probably_damaging(0.978) TCGA-32-2616-01 12 53004457 53004457 G A KRT73 Silent p.L425L 0.05 TCGA-32-2616-01 12 53242773 53242773 G C KRT78 5'UTR 0.14 TCGA-32-2616-01 12 53516970 53516970 G A SOAT2 Missense_Mutation p.V448I 0.30 tolerated(0.09) benign(0.213) TCGA-32-2616-01 12 53776545 53776545 G A SP1 Missense_Mutation p.V272I 0.38 tolerated(0.07) benign(0.433) TCGA-32-2616-01 12 53875972 53875972 C T MAP3K12 Missense_Mutation p.R778H 0.28 tolerated_low_confidence(0.19) possibly_damaging(0.614) TCGA-32-2616-01 12 54917308 54917308 G A NCKAP1L Missense_Mutation p.R670H 0.32 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 12 56718469 56718469 G A PAN2 Missense_Mutation p.R542C 0.40 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 12 56993072 56993072 G A BAZ2A Missense_Mutation p.S1750L 0.59 tolerated(0.3) benign(0) TCGA-32-2616-01 12 57422436 57422436 G A MYO1A 3'UTR 0.46 TCGA-32-2616-01 12 57870676 57870676 G A ARHGAP9 Missense_Mutation p.P314L 0.43 deleterious(0.03) probably_damaging(0.984) TCGA-32-2616-01 12 57971796 57971796 G A KIF5A Missense_Mutation p.R789Q 0.35 tolerated(0.17) probably_damaging(0.926) TCGA-32-2616-01 12 58125149 58125149 G A AGAP2 Silent p.N715N 0.42 TCGA-32-2616-01 12 6128661 6128661 C T VWF Missense_Mutation p.R1308H 0.42 tolerated(1) benign(0) TCGA-32-2616-01 12 6138548 6138548 C T VWF Missense_Mutation p.R976H 0.27 tolerated(0.22) benign(0.003) TCGA-32-2616-01 12 6344464 6344464 C T CD9 Missense_Mutation p.R140W 0.43 deleterious(0) probably_damaging(0.992) TCGA-32-2616-01 12 64536336 64536336 G A SRGAP1 Missense_Mutation p.V1048M 0.46 deleterious_low_confidence(0.03) possibly_damaging(0.715) TCGA-32-2616-01 12 6494261 6494261 C T LTBR Silent p.N89N 0.34 TCGA-32-2616-01 12 6575143 6575143 G A VAMP1 Silent p.N51N 0.08 TCGA-32-2616-01 12 663111 663111 G A B4GALNT3 Silent p.T674T 0.34 TCGA-32-2616-01 12 68595646 68595646 T C IL26 Silent p.K165K 0.37 TCGA-32-2616-01 12 7045326 7045326 C T ATN1 Missense_Mutation p.P299L 0.29 probably_damaging(0.982) TCGA-32-2616-01 12 70952971 70952971 C T PTPRB Intron 0.30 TCGA-32-2616-01 12 76844687 76844687 G A OSBPL8 Missense_Mutation p.T54M 0.33 deleterious_low_confidence(0) benign(0.164) TCGA-32-2616-01 12 80214702 80214702 C T PPP1R12A Silent p.T322T 0.33 TCGA-32-2616-01 12 82751030 82751030 C T CCDC59 Missense_Mutation p.R58Q 0.36 tolerated(0.15) benign(0.103) TCGA-32-2616-01 12 85695095 85695095 G A ALX1 Missense_Mutation p.V275M 0.31 tolerated(0.1) benign(0.008) TCGA-32-2616-01 12 8758008 8758008 C T AICDA Missense_Mutation p.R77H 0.40 deleterious(0.01) probably_damaging(0.976) TCGA-32-2616-01 12 91347815 91347815 C T CCER1 Silent p.A235A 0.06 TCGA-32-2616-01 12 91347965 91347965 C T CCER1 Silent p.A185A 0.40 TCGA-32-2616-01 13 103514731 103514731 C T BIVM-ERCC5 Missense_Mutation p.T837M 0.71 tolerated_low_confidence(0.18) benign(0.004) TCGA-32-2616-01 13 111114691 111114691 G A COL4A2 Missense_Mutation p.R579H 0.37 benign(0.446) TCGA-32-2616-01 13 113530196 113530196 G A ATP11A Missense_Mutation p.D1090N 0.41 deleterious(0) probably_damaging(0.98) TCGA-32-2616-01 13 113699661 113699661 G A MCF2L Missense_Mutation p.V119I 0.35 tolerated(0.22) benign(0.002) TCGA-32-2616-01 13 37269302 37269302 G A SERTM1 Silent p.T29T 0.66 TCGA-32-2616-01 13 37679304 37679304 G A CSNK1A1L Silent p.D30D 0.63 TCGA-32-2616-01 13 38266332 38266332 G A TRPC4 Silent p.C346C 0.57 TCGA-32-2616-01 13 38320391 38320391 G A TRPC4 Missense_Mutation p.R194C 0.68 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 13 48955538 48955538 C T RB1 Nonsense_Mutation p.R552* 0.70 TCGA-32-2616-01 13 48985741 48985741 G A LPAR6 Silent p.Y273Y 0.71 TCGA-32-2616-01 13 50050867 50050867 A G SETDB2 Silent p.L199L 0.61 TCGA-32-2616-01 13 74420502 74420502 G A KLF12 Silent p.N44N 0.07 TCGA-32-2616-01 13 95818473 95818473 G A ABCC4 Missense_Mutation p.S658L 0.62 tolerated(0.23) possibly_damaging(0.815) TCGA-32-2616-01 13 97639296 97639296 G A OXGR1 Nonsense_Mutation p.R240* 0.07 TCGA-32-2616-01 13 98662256 98662256 C T IPO5 Missense_Mutation p.A659V 0.05 deleterious(0.01) probably_damaging(0.953) TCGA-32-2616-01 13 98829257 98829257 G A RNF113B Silent p.G78G 0.37 TCGA-32-2616-01 14 101004426 101004426 C T BEGAIN Silent p.P554P 0.50 TCGA-32-2616-01 14 101201239 101201239 G A DLK1 3'UTR 0.07 TCGA-32-2616-01 14 101489755 101489755 G A MIR411 RNA 0.10 TCGA-32-2616-01 14 102460535 102460535 C T DYNC1H1 Silent p.Y1010Y 0.12 TCGA-32-2616-01 14 102906903 102906903 G A TECPR2 Silent p.T903T 0.05 TCGA-32-2616-01 14 105177344 105177344 C T INF2 Silent p.Y770Y 0.67 TCGA-32-2616-01 14 105931126 105931126 G A MTA1 Missense_Mutation p.R487H 0.14 deleterious(0.04) benign(0.007) TCGA-32-2616-01 14 106054028 106054028 C T IGHA2 Missense_Mutation p.R164H 0.57 tolerated(0.08) benign(0.027) TCGA-32-2616-01 14 107078486 107078486 C T IGHV1-58 Missense_Mutation p.A80T 0.07 benign(0.125) TCGA-32-2616-01 14 23313044 23313044 G A MMP14 Missense_Mutation p.V326M 0.37 deleterious(0) probably_damaging(0.942) TCGA-32-2616-01 14 23373537 23373537 T C RBM23 Splice_Site p.X289_splice 0.31 TCGA-32-2616-01 14 23889309 23889309 C T MYH7 Silent p.T1157T 0.26 TCGA-32-2616-01 14 24534243 24534243 C T LRRC16B Missense_Mutation p.R1053W 0.33 deleterious(0) possibly_damaging(0.531) TCGA-32-2616-01 14 24573081 24573081 C T PCK2 Missense_Mutation p.R611W 0.43 deleterious(0) probably_damaging(0.957) TCGA-32-2616-01 14 24614638 24614638 G A PSME2 Missense_Mutation p.R61W 0.28 deleterious(0) possibly_damaging(0.766) TCGA-32-2616-01 14 24676614 24676614 G A TSSK4 Missense_Mutation p.A245T 0.42 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 14 24739574 24739574 G A RABGGTA Nonsense_Mutation p.R69* 0.33 TCGA-32-2616-01 14 35234329 35234329 C T BAZ1A Silent p.A1149A 0.34 TCGA-32-2616-01 14 38061626 38061626 C T FOXA1 Silent p.A121A 0.20 TCGA-32-2616-01 14 39304900 39304900 G A LINC00639 RNA 0.53 TCGA-32-2616-01 14 47530540 47530540 C T MDGA2 Silent p.T479T 0.29 TCGA-32-2616-01 14 51054690 51054690 C T ATL1 Missense_Mutation p.S59L 0.35 deleterious(0.03) benign(0.019) TCGA-32-2616-01 14 52794140 52794140 C T PTGER2 Nonsense_Mutation p.Q349* 0.34 TCGA-32-2616-01 14 61747320 61747320 G A TMEM30B Silent p.P182P 0.25 TCGA-32-2616-01 14 64457143 64457143 A T SYNE2 Missense_Mutation p.K776N 0.47 possibly_damaging(0.63) TCGA-32-2616-01 14 67799584 67799584 G A MPP5 Missense_Mutation p.D647N 0.23 deleterious(0) probably_damaging(0.983) TCGA-32-2616-01 14 74409310 74409310 C A FAM161B Missense_Mutation p.R408L 0.04 deleterious(0.01) probably_damaging(0.977) TCGA-32-2616-01 14 74973899 74973899 G A LTBP2 Missense_Mutation p.P1297L 0.75 tolerated(0.11) possibly_damaging(0.798) TCGA-32-2616-01 14 75387980 75387980 C T RPS6KL1 Missense_Mutation p.V89I 0.54 tolerated(0.41) probably_damaging(0.922) TCGA-32-2616-01 14 77919728 77919728 C T VIPAS39 Missense_Mutation p.R37Q 0.56 tolerated(0.23) benign(0.119) TCGA-32-2616-01 14 81329168 81329168 C T CEP128 Missense_Mutation p.R232H 0.06 tolerated(0.14) benign(0.287) TCGA-32-2616-01 14 92347670 92347670 G A FBLN5 Missense_Mutation p.R319C 0.11 deleterious(0.01) possibly_damaging(0.549) TCGA-32-2616-01 14 92953022 92953022 G A SLC24A4 Missense_Mutation p.G479R 0.09 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 14 94008976 94008976 C T UNC79 Silent p.T386T 0.63 TCGA-32-2616-01 14 94088790 94088790 C T UNC79 Silent p.C1560C 0.64 TCGA-32-2616-01 15 25322128 25322128 C T SNORD116-9 3'Flank 0.08 TCGA-32-2616-01 15 28356977 28356977 C T HERC2 Missense_Mutation p.D4813N 0.56 probably_damaging(0.99) TCGA-32-2616-01 15 34396377 34396377 G A PGBD4 Missense_Mutation p.D549N 0.52 tolerated_low_confidence(1) benign(0.003) TCGA-32-2616-01 15 35529763 35529763 C T ANP32AP1 RNA 0.43 TCGA-32-2616-01 15 38794599 38794599 G A RASGRP1 Silent p.H484H 0.54 TCGA-32-2616-01 15 40558261 40558261 C T PAK6 Silent p.H141H 0.75 TCGA-32-2616-01 15 42693949 42693949 C T CAPN3 Missense_Mutation p.R489W 0.12 deleterious(0) probably_damaging(1) TCGA-32-2616-01 15 42695124 42695124 G A CAPN3 Missense_Mutation p.V557M 0.14 deleterious(0) probably_damaging(0.967) TCGA-32-2616-01 15 43028274 43028274 G A CDAN1 Missense_Mutation p.T191M 0.15 deleterious(0.04) probably_damaging(0.996) TCGA-32-2616-01 15 43489657 43489657 C T EPB42 Missense_Mutation p.R670H 0.09 deleterious(0.02) benign(0.002) TCGA-32-2616-01 15 43748905 43748905 G A TP53BP1 Missense_Mutation p.P634L 0.57 tolerated(0.19) probably_damaging(0.937) TCGA-32-2616-01 15 43893135 43893135 C T STRC Silent p.A1593A 0.12 TCGA-32-2616-01 15 50905999 50905999 G A TRPM7 Nonsense_Mutation p.R559* 0.56 TCGA-32-2616-01 15 51748371 51748371 G A DMXL2 Silent p.D2785D 0.63 TCGA-32-2616-01 15 51791997 51791997 C T DMXL2 Missense_Mutation p.D1142N 0.12 tolerated(0.09) probably_damaging(0.999) TCGA-32-2616-01 15 54916037 54916037 C T UNC13C Missense_Mutation p.R2082C 0.14 deleterious_low_confidence(0) probably_damaging(1) TCGA-32-2616-01 15 56395790 56395790 G T RFX7 Missense_Mutation p.N160K 0.16 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 15 64499785 64499785 G A CSNK1G1 Missense_Mutation p.R230W 0.52 deleterious(0) probably_damaging(1) TCGA-32-2616-01 15 66599199 66599199 C T DIS3L Missense_Mutation p.R111C 0.06 deleterious(0) probably_damaging(0.932) TCGA-32-2616-01 15 71535092 71535092 G A THSD4 Missense_Mutation p.R190Q 0.53 tolerated(0.13) probably_damaging(0.943) TCGA-32-2616-01 15 72579635 72579635 G A CELF6 Missense_Mutation p.R473W 0.11 deleterious(0) possibly_damaging(0.745) TCGA-32-2616-01 15 73996564 73996564 C T CD276 Missense_Mutation p.R374W 0.56 deleterious(0) probably_damaging(0.993) TCGA-32-2616-01 15 74426729 74426729 G A ISLR2 Missense_Mutation p.R545H 0.38 deleterious(0.01) benign(0.403) TCGA-32-2616-01 15 74912387 74912387 C T CLK3 Missense_Mutation p.R212C 0.11 deleterious(0) possibly_damaging(0.513) TCGA-32-2616-01 15 75122526 75122526 G A CPLX3 Missense_Mutation p.R103Q 0.09 tolerated(0.29) benign(0.061) TCGA-32-2616-01 15 75682115 75682115 G A SIN3A Missense_Mutation p.R967W 0.50 deleterious(0) possibly_damaging(0.896) TCGA-32-2616-01 15 78838067 78838067 C T PSMA4 Silent p.Y156Y 0.56 TCGA-32-2616-01 15 78894272 78894272 G A CHRNA3 Missense_Mutation p.R238W 0.26 deleterious(0) probably_damaging(0.994) TCGA-32-2616-01 15 81605565 81605565 C T STARD5 3'UTR 0.10 TCGA-32-2616-01 15 83678997 83678997 G A C15orf40 Missense_Mutation p.A77V 0.11 deleterious(0.03) possibly_damaging(0.75) TCGA-32-2616-01 15 83932492 83932492 G A BNC1 Missense_Mutation p.T504M 0.60 deleterious(0.02) probably_damaging(0.999) TCGA-32-2616-01 15 85384035 85384035 G A ALPK3 Missense_Mutation p.G711R 0.10 tolerated_low_confidence(0.08) benign(0.015) TCGA-32-2616-01 15 86312911 86312911 A G KLHL25 Missense_Mutation p.M44T 0.59 tolerated(0.12) benign(0.003) TCGA-32-2616-01 15 89385048 89385048 G A ACAN Missense_Mutation p.R236Q 0.49 deleterious(0) unknown(0) TCGA-32-2616-01 15 89442655 89442655 C T MFGE8 Missense_Mutation p.A379T 0.08 tolerated(1) benign(0.006) TCGA-32-2616-01 15 90146117 90146117 G A TICRR Silent p.T886T 0.38 TCGA-32-2616-01 15 91424577 91424577 C T FURIN Silent p.F618F 0.56 TCGA-32-2616-01 16 10729774 10729774 G A TEKT5 Missense_Mutation p.T363M 0.37 deleterious(0.01) possibly_damaging(0.606) TCGA-32-2616-01 16 1144034 1144034 C T C1QTNF8 Missense_Mutation p.G76S 0.29 deleterious(0) possibly_damaging(0.9) TCGA-32-2616-01 16 1254250 1254250 C T CACNA1H Missense_Mutation p.A748V 0.41 tolerated(0.39) benign(0.006) TCGA-32-2616-01 16 14354865 14354865 G A MKL2 Missense_Mutation p.R905Q 0.39 tolerated(0.19) probably_damaging(0.999) TCGA-32-2616-01 16 1550117 1550117 G A TELO2 Silent p.L318L 0.17 TCGA-32-2616-01 16 1576044 1576044 C T IFT140 Missense_Mutation p.R871H 0.47 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 16 15815388 15815388 C T MYH11 Missense_Mutation p.R1497Q 0.04 probably_damaging(0.915) TCGA-32-2616-01 16 17294494 17294494 C T XYLT1 Missense_Mutation p.V311M 0.29 deleterious(0) probably_damaging(0.915) TCGA-32-2616-01 16 19278352 19278352 G A SYT17 Missense_Mutation p.R460Q 0.36 tolerated(0.07) possibly_damaging(0.616) TCGA-32-2616-01 16 2025940 2025940 C T TBL3 Silent p.H373H 0.34 TCGA-32-2616-01 16 20548576 20548576 C T ACSM2B 3'UTR 0.32 TCGA-32-2616-01 16 21185390 21185390 G A TMEM159 Missense_Mutation p.V109I 0.45 tolerated(0.35) benign(0.059) TCGA-32-2616-01 16 2135282 2135282 G A TSC2 Missense_Mutation p.D1541N 0.06 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 16 2156665 2156665 C T PKD1 Missense_Mutation p.R2408H 0.32 benign(0.006) TCGA-32-2616-01 16 22134956 22134956 G A VWA3A Missense_Mutation p.R487Q 0.04 tolerated(0.28) benign(0.023) TCGA-32-2616-01 16 22278158 22278158 G A EEF2K Silent p.S575S 0.35 TCGA-32-2616-01 16 2285294 2285294 C T E4F1 Silent p.N692N 0.29 TCGA-32-2616-01 16 2338112 2338112 G A ABCA3 Silent p.P973P 0.32 TCGA-32-2616-01 16 2345596 2345596 C T ABCA3 Silent p.T803T 0.04 TCGA-32-2616-01 16 23672555 23672555 G A DCTN5 Missense_Mutation p.A101T 0.28 deleterious(0) probably_damaging(0.962) TCGA-32-2616-01 16 23716318 23716318 G A ERN2 Missense_Mutation p.T295M 0.31 deleterious(0.01) probably_damaging(0.931) TCGA-32-2616-01 16 24372970 24372970 G A CACNG3 Missense_Mutation p.R245Q 0.39 tolerated(0.05) possibly_damaging(0.722) TCGA-32-2616-01 16 24581769 24581769 G A RBBP6 Missense_Mutation p.R1253Q 0.31 deleterious_low_confidence(0) unknown(0) TCGA-32-2616-01 16 25175976 25175976 C T LCMT1 Silent p.S209S 0.33 TCGA-32-2616-01 16 25189486 25189486 G A LCMT1 3'UTR 0.40 TCGA-32-2616-01 16 27512556 27512556 G A GTF3C1 Nonsense_Mutation p.R673* 0.37 TCGA-32-2616-01 16 27786288 27786288 C T KIAA0556 Silent p.S1444S 0.34 TCGA-32-2616-01 16 2817604 2817604 G A SRRM2 Missense_Mutation p.A2359T 0.30 possibly_damaging(0.895) TCGA-32-2616-01 16 2825494 2825494 G A TCEB2 Missense_Mutation p.R68W 0.32 tolerated(0.06) benign(0.042) TCGA-32-2616-01 16 28883586 28883586 G A SH2B1 Missense_Mutation p.G530E 0.33 deleterious(0) probably_damaging(1) TCGA-32-2616-01 16 29992941 29992941 C T TAOK2 Intron 0.34 TCGA-32-2616-01 16 30005327 30005327 C T HIRIP3 Missense_Mutation p.G380E 0.33 tolerated(0.34) benign(0.012) TCGA-32-2616-01 16 30594258 30594258 C T ZNF785 Missense_Mutation p.E281K 0.37 tolerated(0.24) benign(0.001) TCGA-32-2616-01 16 30616451 30616451 G A ZNF689 Missense_Mutation p.R213C 0.44 tolerated(0.18) probably_damaging(0.97) TCGA-32-2616-01 16 30748610 30748610 G A SRCAP Missense_Mutation p.A2417T 0.33 benign(0.015) TCGA-32-2616-01 16 30795042 30795042 C T ZNF629 Missense_Mutation p.E203K 0.26 deleterious(0) possibly_damaging(0.522) TCGA-32-2616-01 16 31138664 31138664 G A KAT8 Missense_Mutation p.R224H 0.35 deleterious(0.03) benign(0.12) TCGA-32-2616-01 16 3188459 3188459 G A ZNF213 Missense_Mutation p.R147Q 0.09 tolerated(1) benign(0.001) TCGA-32-2616-01 16 32890604 32890604 C T SLC6A10P RNA 0.18 TCGA-32-2616-01 16 3339479 3339479 C T ZNF263 Nonsense_Mutation p.R325* 0.31 TCGA-32-2616-01 16 3434791 3434791 C T ZSCAN32 Missense_Mutation p.R89Q 0.31 tolerated(0.06) benign(0.005) TCGA-32-2616-01 16 418589 418589 C T MRPL28 Missense_Mutation p.R163Q 0.44 deleterious(0) probably_damaging(0.994) TCGA-32-2616-01 16 4861199 4861199 G A GLYR1 Missense_Mutation p.P520L 0.35 deleterious(0) possibly_damaging(0.676) TCGA-32-2616-01 16 49559353 49559353 C T ZNF423 Silent p.P1210P 0.35 TCGA-32-2616-01 16 49671937 49671937 C T ZNF423 Missense_Mutation p.A376T 0.45 tolerated(0.15) possibly_damaging(0.878) TCGA-32-2616-01 16 50338857 50338857 C T ADCY7 Missense_Mutation p.R528W 0.20 tolerated(0.2) benign(0.04) TCGA-32-2616-01 16 5040864 5040864 G A SEC14L5 Missense_Mutation p.A148T 0.42 deleterious(0) probably_damaging(0.987) TCGA-32-2616-01 16 53403229 53403229 C T RP11-44F14.1 RNA 0.50 TCGA-32-2616-01 16 55803891 55803891 C T CES1P1 RNA 0.65 TCGA-32-2616-01 16 56438915 56438915 G A AMFR Missense_Mutation p.T249M 0.38 deleterious(0.02) benign(0.029) TCGA-32-2616-01 16 56673918 56673918 T - MT1A 3'UTR 0.37 TCGA-32-2616-01 16 58438667 58438667 C T GINS3 3'UTR 0.33 TCGA-32-2616-01 16 66886669 66886669 C T CA7 Missense_Mutation p.R191W 0.35 tolerated(0.19) possibly_damaging(0.624) TCGA-32-2616-01 16 67270476 67270476 C T FHOD1 Missense_Mutation p.E435K 0.23 deleterious(0.04) possibly_damaging(0.643) TCGA-32-2616-01 16 67763358 67763358 C T RANBP10 Missense_Mutation p.V393I 0.20 tolerated(0.57) benign(0.01) TCGA-32-2616-01 16 67911223 67911223 G A EDC4 Silent p.A185A 0.53 TCGA-32-2616-01 16 67913644 67913644 C T EDC4 Silent p.D596D 0.32 TCGA-32-2616-01 16 67963905 67963905 C T CTRL Missense_Mutation p.A243T 0.42 tolerated(1) benign(0.017) TCGA-32-2616-01 16 68112969 68112969 G A DUS2 3'UTR 0.37 TCGA-32-2616-01 16 68398693 68398693 C T SMPD3 Missense_Mutation p.V506I 0.32 tolerated(0.13) benign(0.163) TCGA-32-2616-01 16 68405277 68405277 C T SMPD3 Missense_Mutation p.G270R 0.53 tolerated(0.17) benign(0.166) TCGA-32-2616-01 16 70367462 70367462 G A DDX19B Missense_Mutation p.E473K 0.41 deleterious(0.02) benign(0.136) TCGA-32-2616-01 16 71007758 71007758 C T HYDIN Missense_Mutation p.V1735I 0.21 benign(0.075) TCGA-32-2616-01 16 71209538 71209538 C T HYDIN Missense_Mutation p.R163Q 0.32 possibly_damaging(0.894) TCGA-32-2616-01 16 72142153 72142153 C T DHX38 Missense_Mutation p.R998W 0.42 deleterious(0) probably_damaging(1) TCGA-32-2616-01 16 72830503 72830503 G A ZFHX3 Silent p.Y2026Y 0.49 TCGA-32-2616-01 16 72992083 72992083 C T ZFHX3 Silent p.S654S 0.28 TCGA-32-2616-01 16 74502927 74502927 G A GLG1 Missense_Mutation p.R785C 0.35 deleterious(0) benign(0.198) TCGA-32-2616-01 16 75446559 75446559 G A CFDP1 Silent p.D92D 0.38 TCGA-32-2616-01 16 81164217 81164217 C T PKD1L2 RNA 0.64 TCGA-32-2616-01 16 81248706 81248706 C T PKD1L2 Missense_Mutation p.R186H 0.62 deleterious(0.02) benign(0.187) TCGA-32-2616-01 16 823134 823134 C T MSLNL Missense_Mutation p.A712T 0.46 benign(0.115) TCGA-32-2616-01 16 847922 847922 G A CHTF18 Missense_Mutation p.E959K 0.38 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 16 87445633 87445633 C T ZCCHC14 Silent p.P761P 0.33 TCGA-32-2616-01 16 87678351 87678351 C T JPH3 Silent p.G290G 0.34 TCGA-32-2616-01 16 88947195 88947195 G A CBFA2T3 Silent p.D468D 0.44 TCGA-32-2616-01 16 89220671 89220671 C T ACSF3 3'UTR 0.22 TCGA-32-2616-01 16 89347145 89347145 G A ANKRD11 Silent p.D1935D 0.43 TCGA-32-2616-01 16 89351703 89351703 G A ANKRD11 Missense_Mutation p.A416V 0.43 benign(0) TCGA-32-2616-01 16 89877376 89877376 C T FANCA Silent p.A129A 0.39 TCGA-32-2616-01 16 89965261 89965261 G A TCF25 Missense_Mutation p.R401H 0.38 tolerated(0.1) benign(0.035) TCGA-32-2616-01 16 89971416 89971416 G A TCF25 Missense_Mutation p.A514T 0.18 tolerated(0.34) benign(0.005) TCGA-32-2616-01 16 89999021 89999021 G A TUBB3 Missense_Mutation p.G34S 0.24 deleterious_low_confidence(0.04) probably_damaging(0.979) TCGA-32-2616-01 17 10355421 10355421 G A MYH4 Missense_Mutation p.T1192M 0.46 deleterious(0.04) probably_damaging(0.934) TCGA-32-2616-01 17 1375217 1375217 C T MYO1C Missense_Mutation p.E669K 0.09 deleterious(0.04) benign(0.236) TCGA-32-2616-01 17 1381424 1381424 G A MYO1C Missense_Mutation p.T453M 0.51 deleterious(0) probably_damaging(0.961) TCGA-32-2616-01 17 17698482 17698482 C T RAI1 Silent p.S740S 0.35 TCGA-32-2616-01 17 18653379 18653379 G A FBXW10 Missense_Mutation p.A310T 0.31 tolerated(0.45) benign(0.021) TCGA-32-2616-01 17 19699531 19699531 C T ULK2 Missense_Mutation p.R625H 0.53 tolerated(0.31) benign(0.005) TCGA-32-2616-01 17 25937094 25937094 C T KSR1 Missense_Mutation p.R628C 0.47 deleterious(0.01) benign(0.032) TCGA-32-2616-01 17 25972346 25972346 G A LGALS9 Missense_Mutation p.G183S 0.23 tolerated(0.1) benign(0.001) TCGA-32-2616-01 17 27934839 27934839 G A ANKRD13B Missense_Mutation p.R65H 0.32 deleterious(0) possibly_damaging(0.523) TCGA-32-2616-01 17 29490289 29490289 G A NF1 Missense_Mutation p.R125H 0.36 tolerated(0.56) probably_damaging(0.984) TCGA-32-2616-01 17 30615917 30615917 G A RHBDL3 Missense_Mutation p.R134Q 0.41 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 17 31107600 31107600 T G MYO1D Missense_Mutation p.I100L 0.33 deleterious(0) probably_damaging(1) TCGA-32-2616-01 17 31322545 31322545 C T SPACA3 Silent p.A51A 0.05 TCGA-32-2616-01 17 34432766 34432766 G C CCL4 3'UTR 0.32 TCGA-32-2616-01 17 3563835 3563835 G A CTNS Intron 0.65 TCGA-32-2616-01 17 3567980 3567980 G A TAX1BP3 Missense_Mutation p.T51M 0.65 tolerated(0.06) possibly_damaging(0.801) TCGA-32-2616-01 17 35902433 35902433 G A SYNRG Missense_Mutation p.T948M 0.42 deleterious_low_confidence(0) possibly_damaging(0.79) TCGA-32-2616-01 17 37821662 37821662 G A TCAP Missense_Mutation p.R17H 0.42 deleterious(0.01) benign(0.016) TCGA-32-2616-01 17 3783693 3783693 G A CAMKK1 Missense_Mutation p.S286L 0.25 deleterious(0.02) benign(0.146) TCGA-32-2616-01 17 37902175 37902175 G A GRB7 Missense_Mutation p.R450H 0.37 deleterious(0.02) benign(0.012) TCGA-32-2616-01 17 38251869 38251869 C T NR1D1 Missense_Mutation p.R359H 0.37 tolerated(0.29) benign(0.001) TCGA-32-2616-01 17 38252039 38252039 G A NR1D1 Silent p.Y302Y 0.35 TCGA-32-2616-01 17 38928088 38928088 C T KRT26 Missense_Mutation p.R93H 0.35 deleterious(0.01) probably_damaging(1) TCGA-32-2616-01 17 39620588 39620588 G A KRT32 Silent p.Y272Y 0.41 TCGA-32-2616-01 17 39661416 39661416 G A KRT13 Silent p.N129N 0.38 TCGA-32-2616-01 17 39680486 39680486 G A KRT19 Missense_Mutation p.T286M 0.41 deleterious(0) probably_damaging(0.976) TCGA-32-2616-01 17 39740076 39740076 C T KRT14 Missense_Mutation p.R288H 0.34 deleterious(0.01) possibly_damaging(0.88) TCGA-32-2616-01 17 39767698 39767698 G A KRT16 Missense_Mutation p.R224C 0.32 tolerated(0.06) possibly_damaging(0.479) TCGA-32-2616-01 17 40001889 40001889 G A KLHL10 Missense_Mutation p.R399H 0.23 deleterious(0) possibly_damaging(0.899) TCGA-32-2616-01 17 40717265 40717265 G A COASY Silent p.T470T 0.32 TCGA-32-2616-01 17 40815455 40815455 C T TUBG2 Silent p.D180D 0.33 TCGA-32-2616-01 17 40951057 40951057 C T CNTD1 5'UTR 0.38 TCGA-32-2616-01 17 41341806 41341806 C T NBR1 Missense_Mutation p.R228C 0.34 deleterious(0.02) probably_damaging(1) TCGA-32-2616-01 17 42169652 42169652 G A HDAC5 Missense_Mutation p.A308V 0.27 tolerated(0.64) benign(0) TCGA-32-2616-01 17 42476726 42476726 G A GPATCH8 Missense_Mutation p.R907C 0.36 deleterious_low_confidence(0) unknown(0) TCGA-32-2616-01 17 43003606 43003606 C T KIF18B Intron 0.28 TCGA-32-2616-01 17 43195774 43195774 C T PLCD3 Silent p.T333T 0.41 TCGA-32-2616-01 17 43473478 43473478 G A ARHGAP27 Missense_Mutation p.R412C 0.38 deleterious(0) probably_damaging(0.959) TCGA-32-2616-01 17 46128506 46128506 C T NFE2L1 Missense_Mutation p.T9M 0.04 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 17 46198908 46198908 G A SNX11 3'UTR 0.41 TCGA-32-2616-01 17 47656460 47656460 G A NXPH3 Missense_Mutation p.R186H 0.43 deleterious(0.01) probably_damaging(0.946) TCGA-32-2616-01 17 48245784 48245784 G A SGCA Silent p.A145A 0.23 TCGA-32-2616-01 17 48684279 48684279 G A CACNA1G Missense_Mutation p.V1481I 0.32 deleterious(0) probably_damaging(0.989) TCGA-32-2616-01 17 4926910 4926910 C T KIF1C Missense_Mutation p.R926W 0.11 tolerated_low_confidence(0.12) possibly_damaging(0.876) TCGA-32-2616-01 17 4996261 4996261 C T ZFP3 Missense_Mutation p.R488W 0.05 deleterious(0) benign(0.031) TCGA-32-2616-01 17 51900565 51900565 G A KIF2B Silent p.T57T 0.43 TCGA-32-2616-01 17 5392456 5392456 C T MIS12 Missense_Mutation p.R92C 0.67 tolerated(0.17) benign(0.006) TCGA-32-2616-01 17 56604084 56604084 G A SEPT4 Missense_Mutation p.R121C 0.43 deleterious(0.01) probably_damaging(0.999) TCGA-32-2616-01 17 56676759 56676759 G A TEX14 Silent p.D655D 0.36 TCGA-32-2616-01 17 57232370 57232370 G A SKA2 Intron 0.35 TCGA-32-2616-01 17 59557523 59557523 G A TBX4 Silent p.P288P 0.29 TCGA-32-2616-01 17 59946712 59946712 C T INTS2 Silent p.T1028T 0.40 TCGA-32-2616-01 17 61685342 61685342 G A TACO1 Missense_Mutation p.V292I 0.06 tolerated(0.16) benign(0.22) TCGA-32-2616-01 17 62049775 62049775 G A SCN4A Missense_Mutation p.A110V 0.41 deleterious(0) possibly_damaging(0.456) TCGA-32-2616-01 17 62532819 62532819 C T CEP95 Missense_Mutation p.R724C 0.36 deleterious(0) benign(0.398) TCGA-32-2616-01 17 67077255 67077255 C T ABCA6 Missense_Mutation p.V1550M 0.40 tolerated(0.74) benign(0.018) TCGA-32-2616-01 17 67171589 67171589 G A ABCA10 Silent p.C945C 0.26 TCGA-32-2616-01 17 68129546 68129546 G A KCNJ16 3'UTR 0.31 TCGA-32-2616-01 17 71282046 71282046 G A CDC42EP4 Silent p.Y198Y 0.44 TCGA-32-2616-01 17 73560543 73560543 C T LLGL2 Missense_Mutation p.R331C 0.31 deleterious(0) probably_damaging(1) TCGA-32-2616-01 17 73910955 73910955 C T FBF1 Missense_Mutation p.R881H 0.56 deleterious(0.02) probably_damaging(0.927) TCGA-32-2616-01 17 74077482 74077482 C T ZACN Missense_Mutation p.T223M 0.04 tolerated(0.22) possibly_damaging(0.635) TCGA-32-2616-01 17 74079765 74079765 G A EXOC7 Silent p.G724G 0.35 TCGA-32-2616-01 17 74383347 74383347 C T SPHK1 Missense_Mutation p.R365C 0.36 deleterious(0.01) benign(0.064) TCGA-32-2616-01 17 74622472 74622472 G A ST6GALNAC1 Silent p.D438D 0.41 TCGA-32-2616-01 17 7495610 7495610 G A FXR2 Missense_Mutation p.R630C 0.12 deleterious_low_confidence(0.02) benign(0.276) TCGA-32-2616-01 17 75190903 75190903 G A SEC14L1 Missense_Mutation p.V207I 0.34 tolerated(0.24) benign(0.043) TCGA-32-2616-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.53 tolerated(0.11) benign(0.308) TCGA-32-2616-01 17 76113388 76113388 G A TMC6 Missense_Mutation p.R747C 0.45 deleterious(0) probably_damaging(0.953) TCGA-32-2616-01 17 7636433 7636433 G A DNAH2 Missense_Mutation p.R143H 0.09 probably_damaging(0.953) TCGA-32-2616-01 17 7637898 7637898 C T DNAH2 Nonsense_Mutation p.R284* 0.57 TCGA-32-2616-01 17 76394419 76394419 G A PGS1 Silent p.T166T 0.05 TCGA-32-2616-01 17 76993506 76993506 C T CANT1 Missense_Mutation p.G67S 0.07 tolerated(0.39) benign(0.004) TCGA-32-2616-01 17 7751620 7751620 G C KDM6B Missense_Mutation p.D672H 0.38 unknown(0) TCGA-32-2616-01 17 7796609 7796609 T C CHD3 Missense_Mutation p.L231P 0.30 probably_damaging(0.993) TCGA-32-2616-01 17 78319896 78319896 C T RNF213 Silent p.D2587D 0.07 TCGA-32-2616-01 17 78321934 78321934 G A RNF213 Missense_Mutation p.V3267M 0.36 benign(0.415) TCGA-32-2616-01 17 78357529 78357529 G A RNF213 Missense_Mutation p.R4708H 0.43 possibly_damaging(0.557) TCGA-32-2616-01 17 79096620 79096620 G A AATK Silent p.Y372Y 0.36 TCGA-32-2616-01 17 79256081 79256081 C T SLC38A10 Missense_Mutation p.V137M 0.33 deleterious(0) possibly_damaging(0.787) TCGA-32-2616-01 17 79880926 79880926 C T MAFG Missense_Mutation p.R15Q 0.43 tolerated(0.13) benign(0.025) TCGA-32-2616-01 17 80022764 80022764 C T DUS1L Missense_Mutation p.A58T 0.37 tolerated(0.28) benign(0.23) TCGA-32-2616-01 17 80280776 80280776 C T SECTM1 Missense_Mutation p.R172H 0.28 tolerated(0.15) benign(0.005) TCGA-32-2616-01 17 80544992 80544992 C T FOXK2 Missense_Mutation p.R544W 0.39 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 17 9580112 9580112 C T USP43 Missense_Mutation p.R295W 0.59 deleterious(0) probably_damaging(0.992) TCGA-32-2616-01 18 19761426 19761426 C T GATA6 Missense_Mutation p.R439W 0.04 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 18 28649081 28649081 C T DSC2 Missense_Mutation p.A763T 0.28 tolerated(0.71) benign(0.002) TCGA-32-2616-01 18 2891557 2891557 G A EMILIN2 Missense_Mutation p.A478T 0.32 tolerated(1) benign(0.002) TCGA-32-2616-01 18 29340015 29340015 C T SLC25A52 Missense_Mutation p.A214T 0.04 tolerated(0.25) benign(0.064) TCGA-32-2616-01 18 34261472 34261472 C T FHOD3 Missense_Mutation p.R462W 0.30 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-32-2616-01 18 3879329 3879329 G A DLGAP1 Missense_Mutation p.A247V 0.28 deleterious(0.01) benign(0.079) TCGA-32-2616-01 18 42530982 42530982 G A SETBP1 Silent p.P559P 0.34 TCGA-32-2616-01 18 43481106 43481106 G A EPG5 Missense_Mutation p.R1501W 0.26 deleterious(0) benign(0.335) TCGA-32-2616-01 18 44470960 44470960 G A PIAS2 Missense_Mutation p.R28W 0.38 deleterious(0.02) possibly_damaging(0.876) TCGA-32-2616-01 18 45566492 45566492 G A ZBTB7C Silent p.N329N 0.35 TCGA-32-2616-01 18 45567191 45567191 C T ZBTB7C Silent p.T96T 0.33 TCGA-32-2616-01 18 50866236 50866236 G A DCC Missense_Mutation p.R773H 0.33 deleterious(0.03) possibly_damaging(0.462) TCGA-32-2616-01 18 5423453 5423453 C T EPB41L3 Silent p.A421A 0.37 TCGA-32-2616-01 18 55321230 55321230 G A ATP8B1 Silent p.L1003L 0.32 TCGA-32-2616-01 18 56002734 56002734 C T NEDD4L Missense_Mutation p.R364C 0.36 tolerated(0.05) benign(0.003) TCGA-32-2616-01 18 56585891 56585891 G A ZNF532 Silent p.S124S 0.30 TCGA-32-2616-01 18 59206364 59206364 G A CDH20 Missense_Mutation p.A506T 0.27 tolerated(0.13) possibly_damaging(0.747) TCGA-32-2616-01 18 59217441 59217441 G A CDH20 Missense_Mutation p.A627T 0.17 tolerated(0.33) benign(0.044) TCGA-32-2616-01 18 60639886 60639887 - A PHLPP1 Frame_Shift_Ins p.T1236Nfs*38 0.39 TCGA-32-2616-01 18 61597343 61597343 C T SERPINB10 Silent p.N185N 0.80 TCGA-32-2616-01 18 6311561 6311561 C T L3MBTL4 Missense_Mutation p.G22R 0.34 tolerated(0.17) benign(0.002) TCGA-32-2616-01 18 67992282 67992282 G A SOCS6 Silent p.S126S 0.48 TCGA-32-2616-01 18 71920841 71920841 C T CYB5A Missense_Mutation p.R128H 0.37 tolerated(0.15) benign(0.007) TCGA-32-2616-01 18 76753290 76753290 C T SALL3 Silent p.S433S 0.13 TCGA-32-2616-01 18 77104307 77104307 C T ATP9B Nonsense_Mutation p.R809* 0.26 TCGA-32-2616-01 18 77733744 77733744 G A TXNL4A Missense_Mutation p.R124C 0.35 deleterious(0.01) possibly_damaging(0.763) TCGA-32-2616-01 18 7949191 7949191 C T PTPRM Nonsense_Mutation p.R226* 0.06 TCGA-32-2616-01 19 10506695 10506695 C T CDC37 Missense_Mutation p.R96Q 0.33 tolerated(0.15) benign(0.075) TCGA-32-2616-01 19 1056389 1056389 G A ABCA7 Missense_Mutation p.A1493T 0.47 deleterious(0) probably_damaging(0.97) TCGA-32-2616-01 19 10671868 10671868 G A KRI1 Missense_Mutation p.R194C 0.32 deleterious(0) possibly_damaging(0.901) TCGA-32-2616-01 19 10823284 10823284 G A QTRT1 Missense_Mutation p.V281I 0.48 deleterious(0) probably_damaging(1) TCGA-32-2616-01 19 10870428 10870428 G A DNM2 Missense_Mutation p.R59H 0.33 deleterious(0) probably_damaging(1) TCGA-32-2616-01 19 11033988 11033988 C T YIPF2 Silent p.P310P 0.40 TCGA-32-2616-01 19 11144853 11144853 G A SMARCA4 Missense_Mutation p.E1310K 0.42 probably_damaging(0.995) TCGA-32-2616-01 19 12298079 12298079 C T ZNF136 Nonsense_Mutation p.R296* 0.28 TCGA-32-2616-01 19 12767773 12767773 G A MAN2B1 Missense_Mutation p.T506M 0.46 deleterious(0.02) possibly_damaging(0.45) TCGA-32-2616-01 19 12878648 12878648 G A HOOK2 Missense_Mutation p.R429W 0.38 deleterious(0.02) probably_damaging(0.948) TCGA-32-2616-01 19 13059918 13059918 G A RAD23A Silent p.P208P 0.46 TCGA-32-2616-01 19 13873705 13873705 G A CCDC130 Silent p.P338P 0.40 TCGA-32-2616-01 19 14232379 14232379 G A ASF1B Missense_Mutation p.R123C 0.38 deleterious(0) possibly_damaging(0.899) TCGA-32-2616-01 19 14262327 14262327 G A LPHN1 Silent p.P1261P 0.36 TCGA-32-2616-01 19 14554283 14554283 T C PKN1 Silent p.D114D 0.17 TCGA-32-2616-01 19 14675031 14675031 C T TECR Missense_Mutation p.R141C 0.27 deleterious(0.03) benign(0.008) TCGA-32-2616-01 19 14677712 14677712 G A NDUFB7 Missense_Mutation p.A49V 0.33 deleterious(0.03) probably_damaging(0.995) TCGA-32-2616-01 19 15083611 15083611 G A SLC1A6 Missense_Mutation p.R38C 0.24 deleterious(0) probably_damaging(0.985) TCGA-32-2616-01 19 15355373 15355373 C T BRD4 Silent p.P750P 0.26 TCGA-32-2616-01 19 15383793 15383793 C T BRD4 Missense_Mutation p.A40T 0.36 unknown(0) TCGA-32-2616-01 19 16860396 16860396 C T NWD1 Missense_Mutation p.R315C 0.36 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 19 16987312 16987312 C T SIN3B Missense_Mutation p.R960C 0.36 deleterious(0.04) benign(0.008) TCGA-32-2616-01 19 17450046 17450046 C T GTPBP3 Missense_Mutation p.A292V 0.28 tolerated(0.64) possibly_damaging(0.831) TCGA-32-2616-01 19 18255877 18255877 G A MAST3 Silent p.S930S 0.45 TCGA-32-2616-01 19 18684104 18684104 C T UBA52 Intron 0.38 TCGA-32-2616-01 19 1918984 1918984 C T SCAMP4 Silent p.G130G 0.33 TCGA-32-2616-01 19 19337571 19337571 C T NCAN Missense_Mutation p.T450M 0.37 tolerated(0.08) possibly_damaging(0.826) TCGA-32-2616-01 19 19655904 19655904 C T CILP2 Silent p.D850D 0.34 TCGA-32-2616-01 19 19744726 19744726 C T GMIP Silent p.P786P 0.50 TCGA-32-2616-01 19 2076976 2076976 C T MOB3A Missense_Mutation p.R153Q 0.38 tolerated(0.08) benign(0.009) TCGA-32-2616-01 19 2078386 2078386 G A MOB3A Silent p.N58N 0.49 TCGA-32-2616-01 19 2351551 2351551 C T LLfos-48D6.1 3'Flank 0.44 TCGA-32-2616-01 19 2434328 2434328 G A LMNB2 Silent p.N389N 0.09 TCGA-32-2616-01 19 2852903 2852903 C T ZNF555 Silent p.G280G 0.39 TCGA-32-2616-01 19 287568 287568 C T PPAP2C Missense_Mutation p.V151I 0.34 deleterious(0.05) benign(0.413) TCGA-32-2616-01 19 33202795 33202795 G A NUDT19 Missense_Mutation p.V354M 0.37 tolerated(0.07) benign(0.377) TCGA-32-2616-01 19 33617614 33617614 G A GPATCH1 Missense_Mutation p.V914M 0.40 tolerated_low_confidence(0.21) unknown(0) TCGA-32-2616-01 19 3589462 3589462 G A GIPC3 Missense_Mutation p.R205Q 0.09 tolerated(0.27) possibly_damaging(0.451) TCGA-32-2616-01 19 3600306 3600306 G A TBXA2R Silent p.G109G 0.39 TCGA-32-2616-01 19 36034720 36034720 C T GAPDHS Silent p.T349T 0.26 TCGA-32-2616-01 19 36047893 36047893 C T ATP4A Silent p.A597A 0.26 TCGA-32-2616-01 19 375850 375850 G A THEG Missense_Mutation p.R41W 0.40 deleterious_low_confidence(0.04) benign(0.016) TCGA-32-2616-01 19 38572745 38572745 C T SIPA1L3 Silent p.D180D 0.43 TCGA-32-2616-01 19 38573560 38573560 C T SIPA1L3 Missense_Mutation p.P452L 0.42 tolerated(0.65) benign(0.001) TCGA-32-2616-01 19 38684320 38684320 G A SIPA1L3 Silent p.P1580P 0.37 TCGA-32-2616-01 19 38876293 38876293 C T GGN Missense_Mutation p.A537T 0.27 tolerated_low_confidence(0.14) benign(0.141) TCGA-32-2616-01 19 38876666 38876666 C T GGN Silent p.A412A 0.50 TCGA-32-2616-01 19 38903404 38903404 C T RASGRP4 Missense_Mutation p.A530T 0.44 tolerated(0.09) benign(0.041) TCGA-32-2616-01 19 38903578 38903578 G A RASGRP4 Missense_Mutation p.R510C 0.23 tolerated(0.21) benign(0.003) TCGA-32-2616-01 19 38986891 38986891 G A RYR1 Silent p.P2195P 0.27 TCGA-32-2616-01 19 38998428 38998428 C T RYR1 Missense_Mutation p.R2965C 0.35 benign(0.136) TCGA-32-2616-01 19 39219743 39219743 G A ACTN4 Silent p.T842T 0.37 TCGA-32-2616-01 19 39871332 39871332 C T SAMD4B Silent p.P585P 0.50 TCGA-32-2616-01 19 41008730 41008730 C T SPTBN4 Missense_Mutation p.R418W 0.38 deleterious(0) probably_damaging(0.934) TCGA-32-2616-01 19 41117199 41117199 C T LTBP4 Missense_Mutation p.P718L 0.44 deleterious(0) probably_damaging(0.988) TCGA-32-2616-01 19 41120351 41120351 C T LTBP4 Silent p.D1004D 0.23 TCGA-32-2616-01 19 41123050 41123050 G A LTBP4 Missense_Mutation p.V1064M 0.35 tolerated(0.22) benign(0.062) TCGA-32-2616-01 19 41596066 41596066 C T CYP2A13 Missense_Mutation p.A153V 0.31 deleterious(0) benign(0.016) TCGA-32-2616-01 19 41850748 41850748 G A TGFB1 Nonsense_Mutation p.R180* 0.41 TCGA-32-2616-01 19 42566754 42566754 G A GRIK5 Missense_Mutation p.R132C 0.40 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 19 42873710 42873710 C T MEGF8 Silent p.C2156C 0.35 TCGA-32-2616-01 19 42873780 42873780 C T MEGF8 Missense_Mutation p.R2180C 0.50 deleterious(0.02) possibly_damaging(0.54) TCGA-32-2616-01 19 43032587 43032587 C T CEACAM1 5'UTR 0.48 TCGA-32-2616-01 19 4499546 4499546 G A HDGFRP2 Missense_Mutation p.R545Q 0.30 deleterious(0.01) unknown(0) TCGA-32-2616-01 19 45912769 45912769 G A ERCC1 3'Flank 0.39 TCGA-32-2616-01 19 4664923 4664923 G A C19orf10 Silent p.S84S 0.50 TCGA-32-2616-01 19 46973938 46973938 G A PNMAL1 Missense_Mutation p.R119C 0.38 deleterious(0) possibly_damaging(0.835) TCGA-32-2616-01 19 47570605 47570605 C T ZC3H4 Missense_Mutation p.A974T 0.41 unknown(0) TCGA-32-2616-01 19 47570728 47570728 G A ZC3H4 Missense_Mutation p.R933W 0.37 unknown(0) TCGA-32-2616-01 19 47884520 47884520 G A DHX34 Silent p.T1079T 0.35 TCGA-32-2616-01 19 4817884 4817884 G A TICAM1 Missense_Mutation p.S169L 0.05 deleterious(0.04) benign(0.086) TCGA-32-2616-01 19 48620960 48620960 C T LIG1 Missense_Mutation p.A840T 0.25 tolerated(0.3) benign(0.002) TCGA-32-2616-01 19 48956006 48956006 C T GRWD1 Silent p.P355P 0.25 TCGA-32-2616-01 19 49253699 49253699 C T FUT1 Silent p.T280T 0.43 TCGA-32-2616-01 19 49378874 49378874 C T PPP1R15A Missense_Mutation p.R557C 0.40 tolerated(0.06) possibly_damaging(0.589) TCGA-32-2616-01 19 49496550 49496550 G A GYS1 5'UTR 0.54 TCGA-32-2616-01 19 49686348 49686348 C T TRPM4 Missense_Mutation p.S541L 0.39 tolerated(0.35) benign(0.001) TCGA-32-2616-01 19 50185181 50185181 C T PRMT1 Silent p.D69D 0.31 TCGA-32-2616-01 19 50411537 50411537 G A NUP62 Missense_Mutation p.R510C 0.32 deleterious(0.01) probably_damaging(0.961) TCGA-32-2616-01 19 50482444 50482444 C T VRK3 Silent p.P444P 0.47 TCGA-32-2616-01 19 51483714 51483714 G A KLK7 Missense_Mutation p.T84M 0.56 tolerated(0.15) benign(0.008) TCGA-32-2616-01 19 52132730 52132730 C T SIGLEC5 Missense_Mutation p.R194H 0.29 tolerated(0.96) benign(0.001) TCGA-32-2616-01 19 5244098 5244098 C T PTPRS Missense_Mutation p.V462I 0.38 tolerated(0.23) benign(0.016) TCGA-32-2616-01 19 52941899 52941899 C T ZNF534 Missense_Mutation p.R409C 0.21 tolerated(0.19) benign(0.383) TCGA-32-2616-01 19 535885 535885 C T CDC34 Missense_Mutation p.R76W 0.34 deleterious(0.01) probably_damaging(0.952) TCGA-32-2616-01 19 53644232 53644232 G A ZNF347 Nonsense_Mutation p.R618* 0.45 TCGA-32-2616-01 19 54313521 54313521 C T NLRP12 Silent p.L464L 0.45 TCGA-32-2616-01 19 54610146 54610146 C T NDUFA3 Silent p.P64P 0.37 TCGA-32-2616-01 19 54726844 54726844 G A LILRB3 Missense_Mutation p.T2M 0.11 deleterious(0.01) unknown(0) TCGA-32-2616-01 19 54746596 54746596 G A LILRA6 Missense_Mutation p.T2M 0.16 deleterious(0.02) benign(0.005) TCGA-32-2616-01 19 54803540 54803540 C T LILRA3 Missense_Mutation p.R95Q 0.45 tolerated(0.32) benign(0.064) TCGA-32-2616-01 19 55177750 55177750 G A LILRB4 Missense_Mutation p.G312R 0.41 tolerated(1) benign(0.001) TCGA-32-2616-01 19 55378097 55378097 G A KIR3DL2 Missense_Mutation p.V427M 0.34 tolerated(0.16) benign(0.15) TCGA-32-2616-01 19 55451721 55451721 G A NLRP7 Missense_Mutation p.R156W 0.36 deleterious(0.01) possibly_damaging(0.856) TCGA-32-2616-01 19 55805451 55805451 C T BRSK1 Silent p.F175F 0.03 TCGA-32-2616-01 19 56162716 56162716 C T CCDC106 Silent p.G127G 0.66 TCGA-32-2616-01 19 5664439 5664439 C T SAFB Nonsense_Mutation p.R775* 0.23 TCGA-32-2616-01 19 58967776 58967776 G A ZNF324B Missense_Mutation p.A489T 0.36 deleterious(0) benign(0.376) TCGA-32-2616-01 19 6456457 6456457 C T SLC25A23 Missense_Mutation p.V153M 0.28 tolerated(0.07) possibly_damaging(0.88) TCGA-32-2616-01 19 7589904 7589904 C T MCOLN1 Missense_Mutation p.P30L 0.37 tolerated(0.63) benign(0.001) TCGA-32-2616-01 19 7605869 7605869 C T PNPLA6 Missense_Mutation p.R295C 0.42 deleterious(0.01) benign(0.393) TCGA-32-2616-01 19 7712089 7712089 C T STXBP2 Silent p.F498F 0.42 TCGA-32-2616-01 19 8368905 8368905 G A CD320 Silent p.G112G 0.33 TCGA-32-2616-01 19 8665852 8665852 C T ADAMTS10 Missense_Mutation p.R257H 0.36 deleterious(0) possibly_damaging(0.591) TCGA-32-2616-01 19 8842274 8842274 C T OR2Z1 Missense_Mutation p.P295L 0.41 deleterious(0) benign(0.014) TCGA-32-2616-01 19 9237565 9237565 G A OR7G3 Missense_Mutation p.P21L 0.37 tolerated(0.07) benign(0.007) TCGA-32-2616-01 19 9921613 9921613 C T FBXL12 Missense_Mutation p.V314I 0.36 tolerated(0.05) benign(0.017) TCGA-32-2616-01 1 10689856 10689856 G A PEX14 Missense_Mutation p.E316K 0.44 tolerated_low_confidence(0.19) possibly_damaging(0.572) TCGA-32-2616-01 1 110294652 110294652 G A EPS8L3 Missense_Mutation p.R468W 0.05 deleterious(0) possibly_damaging(0.799) TCGA-32-2616-01 1 110561677 110561677 G A AHCYL1 Missense_Mutation p.R441H 0.35 deleterious(0.02) benign(0.128) TCGA-32-2616-01 1 110906299 110906299 C T SLC16A4 3'UTR 0.29 TCGA-32-2616-01 1 111862928 111862928 C T CHIA Missense_Mutation p.S424L 0.30 tolerated(0.25) benign(0.017) TCGA-32-2616-01 1 114510408 114510408 A G HIPK1 Missense_Mutation p.N801S 0.39 tolerated(0.86) benign(0.002) TCGA-32-2616-01 1 114640467 114640467 C T SYT6 Missense_Mutation p.R381H 0.21 deleterious(0.03) probably_damaging(0.987) TCGA-32-2616-01 1 115401310 115401310 G A SYCP1 Missense_Mutation p.R145Q 0.44 deleterious(0) probably_damaging(1) TCGA-32-2616-01 1 11562063 11562063 G A PTCHD2 Silent p.S338S 0.34 TCGA-32-2616-01 1 120311440 120311440 G A HMGCS2 Missense_Mutation p.R10C 0.29 tolerated_low_confidence(0.11) benign(0.004) TCGA-32-2616-01 1 1273421 1273421 C T DVL1 Silent p.P525P 0.29 TCGA-32-2616-01 1 12921197 12921197 G A PRAMEF2 Missense_Mutation p.V330M 0.03 deleterious(0.03) benign(0.095) TCGA-32-2616-01 1 144879498 144879498 G A PDE4DIP Missense_Mutation p.R1318C 0.22 tolerated(0.18) possibly_damaging(0.663) TCGA-32-2616-01 1 144892096 144892096 G A PDE4DIP Intron 0.33 TCGA-32-2616-01 1 148932814 148932814 G A RP11-14N7.2 RNA 0.13 TCGA-32-2616-01 1 150527977 150527977 A G ADAMTSL4 Missense_Mutation p.K436R 0.05 tolerated(0.39) probably_damaging(0.999) TCGA-32-2616-01 1 152187545 152187545 C T HRNR Missense_Mutation p.R2187Q 0.19 unknown(0) TCGA-32-2616-01 1 152733396 152733396 G A KPRP Silent p.P444P 0.04 TCGA-32-2616-01 1 154207205 154207205 C T UBAP2L Missense_Mutation p.R140W 0.30 deleterious(0.02) unknown(0) TCGA-32-2616-01 1 155257040 155257040 C T HCN3 Silent p.S518S 0.38 TCGA-32-2616-01 1 155629996 155629996 C T YY1AP1 Missense_Mutation p.G707S 0.28 tolerated_low_confidence(1) benign(0.006) TCGA-32-2616-01 1 156262749 156262749 C T C1orf85 3'UTR 0.42 TCGA-32-2616-01 1 156906733 156906733 G A ARHGEF11 Missense_Mutation p.T1502M 0.37 deleterious_low_confidence(0) probably_damaging(1) TCGA-32-2616-01 1 156913742 156913742 G A ARHGEF11 Missense_Mutation p.R1074C 0.35 deleterious(0) probably_damaging(1) TCGA-32-2616-01 1 156918157 156918157 G A ARHGEF11 Missense_Mutation p.R687C 0.46 deleterious(0) possibly_damaging(0.828) TCGA-32-2616-01 1 158581061 158581061 C T SPTA1 Missense_Mutation p.G2418D 0.27 tolerated(0.32) probably_damaging(0.981) TCGA-32-2616-01 1 16073404 16073404 C T TMEM82 Missense_Mutation p.T267M 0.39 deleterious(0.02) probably_damaging(1) TCGA-32-2616-01 1 161144928 161144928 C T B4GALT3 Missense_Mutation p.R115H 0.04 tolerated(0.07) benign(0.032) TCGA-32-2616-01 1 161197053 161197053 G A TOMM40L Silent p.A63A 0.45 TCGA-32-2616-01 1 162325040 162325040 C T NOS1AP Missense_Mutation p.A220V 0.39 deleterious(0.05) benign(0.251) TCGA-32-2616-01 1 165378855 165378855 G A RXRG Missense_Mutation p.T329M 0.18 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 1 167793805 167793805 G A ADCY10 Nonsense_Mutation p.R1321* 0.41 TCGA-32-2616-01 1 169293678 169293678 G A NME7 Nonsense_Mutation p.R22* 0.34 TCGA-32-2616-01 1 17275381 17275381 C T CROCC Silent p.A932A 0.19 TCGA-32-2616-01 1 177000076 177000076 G A ASTN1 Missense_Mutation p.A293V 0.44 tolerated_low_confidence(0.2) benign(0.214) TCGA-32-2616-01 1 180013261 180013261 A G CEP350 Silent p.S1525S 0.50 TCGA-32-2616-01 1 18152457 18152457 G A ACTL8 Missense_Mutation p.A182T 0.40 tolerated(0.29) benign(0.018) TCGA-32-2616-01 1 183111854 183111854 C T LAMC1 Missense_Mutation p.R1587C 0.07 deleterious(0.03) benign(0.163) TCGA-32-2616-01 1 185902766 185902766 G A HMCN1 Silent p.A546A 0.46 TCGA-32-2616-01 1 18809633 18809633 G A KLHDC7A Missense_Mutation p.V720M 0.34 deleterious(0) probably_damaging(0.939) TCGA-32-2616-01 1 19478964 19478964 C T UBR4 Missense_Mutation p.R2280H 0.37 probably_damaging(0.953) TCGA-32-2616-01 1 201052359 201052359 C T CACNA1S Missense_Mutation p.V442I 0.30 deleterious(0.03) benign(0.172) TCGA-32-2616-01 1 201759824 201759824 G A NAV1 Missense_Mutation p.R1084Q 0.43 deleterious(0.03) probably_damaging(0.981) TCGA-32-2616-01 1 201843386 201843386 C T IPO9 Missense_Mutation p.R907C 0.45 deleterious(0.03) benign(0.004) TCGA-32-2616-01 1 203097923 203097923 C T ADORA1 5'UTR 0.36 TCGA-32-2616-01 1 20416313 20416313 C T PLA2G5 Missense_Mutation p.R73W 0.37 tolerated(0.1) benign(0.003) TCGA-32-2616-01 1 204210605 204210605 G A PLEKHA6 Silent p.G769G 0.14 TCGA-32-2616-01 1 205897037 205897037 G A SLC26A9 Missense_Mutation p.S365L 0.43 deleterious(0.01) possibly_damaging(0.612) TCGA-32-2616-01 1 206759995 206759995 G C RASSF5 Intron 0.09 TCGA-32-2616-01 1 206773658 206773658 C T EIF2D Missense_Mutation p.E303K 0.31 tolerated(0.44) benign(0.003) TCGA-32-2616-01 1 207105843 207105843 C T PIGR Missense_Mutation p.V656M 0.28 tolerated(0.23) benign(0.081) TCGA-32-2616-01 1 21050721 21050721 G A SH2D5 Silent p.G218G 0.46 TCGA-32-2616-01 1 22175267 22175267 C T HSPG2 Missense_Mutation p.V2536I 0.31 benign(0.05) TCGA-32-2616-01 1 22188552 22188552 G A HSPG2 Silent p.Y1599Y 0.37 TCGA-32-2616-01 1 2235397 2235397 G A SKI Missense_Mutation p.E444K 0.28 tolerated(0.11) possibly_damaging(0.487) TCGA-32-2616-01 1 227921064 227921064 G A SNAP47 5'Flank 0.36 TCGA-32-2616-01 1 228333668 228333668 C T GUK1 Intron 0.23 TCGA-32-2616-01 1 228403345 228403345 C T OBSCN Missense_Mutation p.T637M 0.33 probably_damaging(1) TCGA-32-2616-01 1 228404744 228404744 C T OBSCN Missense_Mutation p.A803V 0.17 benign(0.063) TCGA-32-2616-01 1 228509330 228509330 C T OBSCN Missense_Mutation p.R5887C 0.45 benign(0.007) TCGA-32-2616-01 1 228538630 228538630 G A OBSCN Silent p.P7092P 0.42 TCGA-32-2616-01 1 230381896 230381896 G A GALNT2 Missense_Mutation p.G273S 0.37 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 1 23111221 23111221 C T EPHB2 Missense_Mutation p.R155C 0.37 deleterious(0) probably_damaging(0.988) TCGA-32-2616-01 1 231472153 231472153 G A EXOC8 Missense_Mutation p.R447C 0.36 deleterious(0) probably_damaging(0.927) TCGA-32-2616-01 1 236900433 236900433 G A ACTN2 Silent p.A265A 0.26 TCGA-32-2616-01 1 23848405 23848405 G A E2F2 Missense_Mutation p.R168C 0.46 deleterious(0) probably_damaging(1) TCGA-32-2616-01 1 240071991 240071991 G A CHRM3 Missense_Mutation p.V414M 0.09 tolerated(0.14) benign(0.006) TCGA-32-2616-01 1 24434541 24434541 C T MYOM3 Missense_Mutation p.A62T 0.04 tolerated(0.22) benign(0.079) TCGA-32-2616-01 1 24483429 24483429 C T IFNLR1 3'UTR 0.62 TCGA-32-2616-01 1 247004254 247004254 G A AHCTF1 Missense_Mutation p.R2228W 0.41 deleterious(0) possibly_damaging(0.889) TCGA-32-2616-01 1 247040307 247040307 C T AHCTF1 Missense_Mutation p.R970H 0.37 deleterious(0.01) probably_damaging(0.987) TCGA-32-2616-01 1 247491995 247491995 G A ZNF496 Silent p.S188S 0.36 TCGA-32-2616-01 1 247587315 247587315 C T NLRP3 Silent p.I190I 0.22 TCGA-32-2616-01 1 248487392 248487392 G A OR2M7 Missense_Mutation p.A160V 0.03 tolerated(0.88) benign(0.001) TCGA-32-2616-01 1 248551360 248551360 G A OR2T6 Missense_Mutation p.G151S 0.37 tolerated(0.27) probably_damaging(0.992) TCGA-32-2616-01 1 248551575 248551575 C T OR2T6 Silent p.L222L 0.39 TCGA-32-2616-01 1 25256157 25256157 C T RUNX3 Missense_Mutation p.R82H 0.20 deleterious(0) probably_damaging(0.969) TCGA-32-2616-01 1 27176839 27176839 C T ZDHHC18 Missense_Mutation p.R232W 0.38 deleterious(0.01) possibly_damaging(0.751) TCGA-32-2616-01 1 27269526 27269526 C T NUDC Silent p.D237D 0.44 TCGA-32-2616-01 1 27876985 27876985 C T AHDC1 Missense_Mutation p.G548S 0.40 deleterious(0) probably_damaging(0.935) TCGA-32-2616-01 1 31437645 31437645 G A PUM1 Silent p.N733N 0.40 TCGA-32-2616-01 1 31438889 31438889 C T PUM1 Missense_Mutation p.G676R 0.38 deleterious(0) probably_damaging(1) TCGA-32-2616-01 1 31478730 31478730 C T PUM1 Silent p.P230P 0.34 TCGA-32-2616-01 1 32085151 32085151 G A HCRTR1 Missense_Mutation p.R73Q 0.33 deleterious(0.05) benign(0.095) TCGA-32-2616-01 1 33235863 33235863 G A KIAA1522 Silent p.P361P 0.36 TCGA-32-2616-01 1 33236308 33236308 C T KIAA1522 Missense_Mutation p.R510W 0.35 deleterious(0) unknown(0) TCGA-32-2616-01 1 33764607 33764607 C T ZNF362 Missense_Mutation p.T408M 0.38 deleterious_low_confidence(0) possibly_damaging(0.745) TCGA-32-2616-01 1 3422728 3422728 C T MEGF6 Missense_Mutation p.R621H 0.38 deleterious(0) probably_damaging(0.989) TCGA-32-2616-01 1 3624158 3624158 C T TP73 Missense_Mutation p.R78C 0.42 tolerated(0.11) probably_damaging(0.953) TCGA-32-2616-01 1 37285406 37285406 C T GRIK3 Missense_Mutation p.E602K 0.39 deleterious(0.05) benign(0.105) TCGA-32-2616-01 1 37948131 37948131 G A ZC3H12A Silent p.P305P 0.31 TCGA-32-2616-01 1 38056315 38056315 G A GNL2 Missense_Mutation p.R126W 0.29 deleterious(0) possibly_damaging(0.773) TCGA-32-2616-01 1 38082175 38082175 G A RSPO1 Silent p.P89P 0.39 TCGA-32-2616-01 1 41486002 41486002 G A SLFNL1 Missense_Mutation p.R111C 0.07 deleterious(0.01) possibly_damaging(0.891) TCGA-32-2616-01 1 41486246 41486246 G A SLFNL1 Silent p.P29P 0.38 TCGA-32-2616-01 1 43228027 43228027 G A LEPRE1 Silent p.A195A 0.32 TCGA-32-2616-01 1 43748762 43748762 C T C1orf210 Silent p.S12S 0.38 TCGA-32-2616-01 1 43779120 43779120 C - TIE1 Intron 0.25 TCGA-32-2616-01 1 43913641 43913641 C T SZT2 Missense_Mutation p.R3131W 0.25 deleterious(0.01) probably_damaging(0.999) TCGA-32-2616-01 1 44087694 44087694 C T PTPRF 3'UTR 0.32 TCGA-32-2616-01 1 45272280 45272280 G A TCTEX1D4 Missense_Mutation p.R21W 0.50 deleterious(0.02) benign(0.006) TCGA-32-2616-01 1 46496777 46496777 C T MAST2 Missense_Mutation p.A936V 0.42 tolerated_low_confidence(0.83) benign(0.001) TCGA-32-2616-01 1 47024318 47024318 G A MKNK1 Missense_Mutation p.R443C 0.36 deleterious(0) probably_damaging(0.993) TCGA-32-2616-01 1 47904152 47904152 G A FOXD2 Silent p.P115P 0.42 TCGA-32-2616-01 1 49332896 49332896 G A AGBL4 Nonsense_Mutation p.R201* 0.46 TCGA-32-2616-01 1 50956285 50956285 C T FAF1 Missense_Mutation p.R543H 0.41 deleterious(0.01) possibly_damaging(0.518) TCGA-32-2616-01 1 52257299 52257299 C T NRD1 Missense_Mutation p.G1039R 0.40 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 1 54606841 54606841 G A CDCP2 Silent p.H231H 0.45 TCGA-32-2616-01 1 55166924 55166924 C T MROH7 Missense_Mutation p.R1072W 0.33 deleterious(0.03) benign(0.002) TCGA-32-2616-01 1 55464882 55464882 G A BSND Missense_Mutation p.R8Q 0.40 deleterious(0) probably_damaging(1) TCGA-32-2616-01 1 57378090 57378090 C T C8A Silent p.H465H 0.39 TCGA-32-2616-01 1 57481088 57481088 G A DAB1 Silent p.G304G 0.14 TCGA-32-2616-01 1 6189119 6189119 C T CHD5 Missense_Mutation p.R1133H 0.34 deleterious(0.01) probably_damaging(0.931) TCGA-32-2616-01 1 6521712 6521712 G A TNFRSF25 Missense_Mutation p.R355C 0.33 deleterious(0.02) probably_damaging(0.929) TCGA-32-2616-01 1 7826682 7826682 A G CAMTA1 3'UTR 0.36 TCGA-32-2616-01 1 85564232 85564232 C T WDR63 Missense_Mutation p.P457L 0.47 tolerated(0.14) benign(0.04) TCGA-32-2616-01 1 865661 865661 C T SAMD11 Missense_Mutation p.R67W 0.36 tolerated(0.06) benign(0.004) TCGA-32-2616-01 1 89251812 89251812 C T PKN2 Silent p.L399L 0.15 TCGA-32-2616-01 1 89525079 89525079 C T GBP1 Missense_Mutation p.A117T 0.21 tolerated(0.07) benign(0.039) TCGA-32-2616-01 1 93680308 93680308 G A CCDC18 Missense_Mutation p.V555I 0.36 tolerated(0.22) benign(0.001) TCGA-32-2616-01 1 94054541 94054541 G T BCAR3 Missense_Mutation p.L308I 0.35 tolerated(0.07) possibly_damaging(0.524) TCGA-32-2616-01 1 94140352 94140352 C T BCAR3 Silent p.V45V 0.34 TCGA-32-2616-01 1 977058 977058 C T AGRN Missense_Mutation p.R385C 0.42 deleterious(0.02) possibly_damaging(0.748) TCGA-32-2616-01 1 9790617 9790617 G A CLSTN1 Silent p.N965N 0.37 TCGA-32-2616-01 20 1551697 1551697 G A SIRPB1 Missense_Mutation p.R280W 0.37 deleterious(0) possibly_damaging(0.773) TCGA-32-2616-01 20 18297379 18297379 G A ZNF133 Silent p.T627T 0.43 TCGA-32-2616-01 20 19674040 19674040 G A SLC24A3 Missense_Mutation p.A488T 0.39 deleterious(0.02) probably_damaging(1) TCGA-32-2616-01 20 21142690 21142690 G A RP4-777D9.2 Intron 0.47 TCGA-32-2616-01 20 2842490 2842490 C T VPS16 Silent p.L313L 0.16 TCGA-32-2616-01 20 31022346 31022346 G A ASXL1 Missense_Mutation p.A611T 0.37 deleterious(0.05) benign(0.017) TCGA-32-2616-01 20 33501214 33501214 G A ACSS2 Missense_Mutation p.R162Q 0.04 deleterious(0.01) probably_damaging(0.912) TCGA-32-2616-01 20 33589834 33589834 G A MYH7B Silent p.A1962A 0.06 TCGA-32-2616-01 20 34065775 34065775 C T CEP250 Missense_Mutation p.A648V 0.09 benign(0.008) TCGA-32-2616-01 20 34596388 34596388 G A CNBD2 Silent p.P380P 0.36 TCGA-32-2616-01 20 36932719 36932719 G A BPI Missense_Mutation p.V36I 0.40 tolerated(0.34) benign(0.003) TCGA-32-2616-01 20 43541355 43541355 G A PABPC1L Missense_Mutation p.R83H 0.34 deleterious(0) probably_damaging(1) TCGA-32-2616-01 20 43881658 43881658 C T SLPI Missense_Mutation p.V127I 0.34 tolerated(0.27) benign(0.079) TCGA-32-2616-01 20 44430048 44430048 G A DNTTIP1 Missense_Mutation p.R150H 0.35 deleterious(0.01) possibly_damaging(0.899) TCGA-32-2616-01 20 44576002 44576002 G A PCIF1 Missense_Mutation p.R603H 0.33 tolerated(0.32) possibly_damaging(0.864) TCGA-32-2616-01 20 47626828 47626828 C T ARFGEF2 Missense_Mutation p.A1215V 0.04 tolerated(0.19) possibly_damaging(0.727) TCGA-32-2616-01 20 48098748 48098748 G A KCNB1 Silent p.G90G 0.30 TCGA-32-2616-01 20 4854641 4854641 C T SLC23A2 Missense_Mutation p.R348H 0.43 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 20 55052129 55052129 G A RTFDC1 Missense_Mutation p.R116Q 0.42 tolerated(0.59) possibly_damaging(0.764) TCGA-32-2616-01 20 60427892 60427892 A G CDH4 Missense_Mutation p.D272G 0.37 deleterious(0) probably_damaging(1) TCGA-32-2616-01 20 60902621 60902621 C T LAMA5 Silent p.T1634T 0.41 TCGA-32-2616-01 20 61143781 61143781 G A C20orf166 5'Flank 0.38 TCGA-32-2616-01 20 61292486 61292486 G A SLCO4A1 Silent p.A360A 0.37 TCGA-32-2616-01 20 61341219 61341219 C T NTSR1 Silent p.G220G 0.29 TCGA-32-2616-01 20 61391458 61391458 C A NTSR1 Missense_Mutation p.L366I 0.37 tolerated(0.09) possibly_damaging(0.804) TCGA-32-2616-01 20 61459328 61459328 G A COL9A3 Silent p.P300P 0.28 TCGA-32-2616-01 20 61542746 61542746 G A DIDO1 Silent p.R73R 0.40 TCGA-32-2616-01 20 62120417 62120417 G A EEF1A2 Missense_Mutation p.A373V 0.32 deleterious_low_confidence(0.02) benign(0.311) TCGA-32-2616-01 20 62173584 62173584 G A SRMS Missense_Mutation p.S293L 0.47 deleterious(0) probably_damaging(1) TCGA-32-2616-01 20 62630993 62630993 C T PRPF6 Missense_Mutation p.R302W 0.34 deleterious(0.01) benign(0.077) TCGA-32-2616-01 20 62836422 62836422 G A MYT1 Missense_Mutation p.V41I 0.29 benign(0.016) TCGA-32-2616-01 20 62899255 62899255 C T PCMTD2 Missense_Mutation p.R200C 0.41 deleterious(0) probably_damaging(0.977) TCGA-32-2616-01 21 31709421 31709421 G A KRTAP27-1 Missense_Mutation p.S189F 0.48 deleterious(0) probably_damaging(0.967) TCGA-32-2616-01 21 31863890 31863890 A - KRTAP19-3 3'UTR 0.33 TCGA-32-2616-01 21 37710126 37710126 C T MORC3 Silent p.D114D 0.42 TCGA-32-2616-01 21 37833631 37833631 G A CLDN14 Silent p.G121G 0.33 TCGA-32-2616-01 21 43838667 43838667 C T UBASH3A Missense_Mutation p.P332L 0.30 deleterious(0) probably_damaging(1) TCGA-32-2616-01 21 46600298 46600298 C T ADARB1 Silent p.T339T 0.31 TCGA-32-2616-01 21 46945739 46945739 G A SLC19A1 Missense_Mutation p.R429C 0.48 tolerated(0.18) benign(0.051) TCGA-32-2616-01 21 47404280 47404280 G A COL6A1 Missense_Mutation p.G109S 0.42 tolerated(0.19) unknown(0) TCGA-32-2616-01 21 47404283 47404283 C T COL6A1 Missense_Mutation p.R110C 0.47 deleterious(0) unknown(0) TCGA-32-2616-01 21 47422465 47422465 G A COL6A1 Missense_Mutation p.V759M 0.36 tolerated(0.31) benign(0.083) TCGA-32-2616-01 21 47423639 47423639 C T COL6A1 Silent p.G933G 0.45 TCGA-32-2616-01 21 47848406 47848406 C T PCNT Missense_Mutation p.T2531M 0.43 benign(0.047) TCGA-32-2616-01 21 47978163 47978163 C T DIP2A Missense_Mutation p.R1276C 0.16 deleterious(0) benign(0.001) TCGA-32-2616-01 21 47985751 47985751 C T DIP2A Silent p.T1430T 0.33 TCGA-32-2616-01 22 17072893 17072893 A C CCT8L2 Missense_Mutation p.L183R 0.42 deleterious(0) probably_damaging(0.98) TCGA-32-2616-01 22 17625970 17625970 G A CECR5 Missense_Mutation p.R161W 0.44 deleterious(0) possibly_damaging(0.899) TCGA-32-2616-01 22 18022357 18022357 C T CECR2 Missense_Mutation p.P821L 0.33 tolerated_low_confidence(0.06) benign(0.231) TCGA-32-2616-01 22 18655995 18655995 C T USP18 Missense_Mutation p.R324W 0.40 tolerated(0.15) benign(0.072) TCGA-32-2616-01 22 19340920 19340920 C T HIRA Missense_Mutation p.R936H 0.29 tolerated(0.18) benign(0.141) TCGA-32-2616-01 22 19459257 19459257 C T UFD1L Missense_Mutation p.V82M 0.28 deleterious(0) probably_damaging(0.978) TCGA-32-2616-01 22 21348289 21348289 C T LZTR1 Missense_Mutation p.A477V 0.44 deleterious(0.01) possibly_damaging(0.876) TCGA-32-2616-01 22 21562968 21562968 G A GGT2 Silent p.F491F 0.61 TCGA-32-2616-01 22 21800908 21800908 G A HIC2 Missense_Mutation p.R575H 0.33 deleterious(0.04) probably_damaging(0.954) TCGA-32-2616-01 22 21989252 21989252 G A CCDC116 Silent p.T300T 0.40 TCGA-32-2616-01 22 21989451 21989451 C T CCDC116 Missense_Mutation p.R367C 0.26 tolerated(0.18) possibly_damaging(0.646) TCGA-32-2616-01 22 22287910 22287910 G A PPM1F Silent p.H200H 0.30 TCGA-32-2616-01 22 23223321 23223321 G A IGLV3-1 Missense_Mutation p.V31M 0.35 deleterious(0.04) possibly_damaging(0.762) TCGA-32-2616-01 22 24515597 24515597 C T CABIN1 Missense_Mutation p.R1522C 0.40 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 22 26688610 26688610 C T SEZ6L Silent p.H111H 0.43 TCGA-32-2616-01 22 28306975 28306975 C T PITPNB Silent p.T58T 0.28 TCGA-32-2616-01 22 29708144 29708144 G A GAS2L1 3'Flank 0.41 TCGA-32-2616-01 22 30803096 30803096 C T SEC14L2 Nonsense_Mutation p.R63* 0.27 TCGA-32-2616-01 22 31495066 31495066 C T SMTN Silent p.R784R 0.32 TCGA-32-2616-01 22 31500909 31500909 C T SELM 3'UTR 0.38 TCGA-32-2616-01 22 32875096 32875096 C T FBXO7 Missense_Mutation p.A84V 0.03 deleterious(0.03) possibly_damaging(0.857) TCGA-32-2616-01 22 35719047 35719047 C T TOM1 Silent p.C81C 0.29 TCGA-32-2616-01 22 36116701 36116701 C T APOL5 Missense_Mutation p.P48S 0.16 tolerated(0.74) benign(0.018) TCGA-32-2616-01 22 37902298 37902298 C T CARD10 Silent p.A428A 0.38 TCGA-32-2616-01 22 37975908 37975908 G A LGALS2 Missense_Mutation p.T2M 0.16 tolerated(0.08) possibly_damaging(0.469) TCGA-32-2616-01 22 38038984 38038984 G A SH3BP1 Missense_Mutation p.V123I 0.15 tolerated(0.17) probably_damaging(0.927) TCGA-32-2616-01 22 40059771 40059771 C T CACNA1I Silent p.Y1174Y 0.44 TCGA-32-2616-01 22 40283747 40283747 C T ENTHD1 Silent p.A2A 0.34 TCGA-32-2616-01 22 40717185 40717185 G A TNRC6B Missense_Mutation p.R1689Q 0.42 deleterious(0) possibly_damaging(0.612) TCGA-32-2616-01 22 40800618 40800618 C T SGSM3 Missense_Mutation p.R142C 0.56 deleterious(0.01) possibly_damaging(0.849) TCGA-32-2616-01 22 40801692 40801692 G A SGSM3 Missense_Mutation p.A220T 0.34 tolerated(0.31) benign(0.078) TCGA-32-2616-01 22 40807753 40807753 G A MKL1 Missense_Mutation p.R813C 0.49 deleterious(0) probably_damaging(0.988) TCGA-32-2616-01 22 41895746 41895746 G A ACO2 Missense_Mutation p.R18Q 0.37 deleterious_low_confidence(0.02) benign(0.258) TCGA-32-2616-01 22 42525153 42525153 G A CYP2D6 Silent p.R129R 0.51 TCGA-32-2616-01 22 46238901 46238901 G A ATXN10 Missense_Mutation p.R423Q 0.43 deleterious(0) probably_damaging(1) TCGA-32-2616-01 22 46704833 46704833 C T GTSE1 Missense_Mutation p.A252V 0.41 tolerated(1) benign(0.003) TCGA-32-2616-01 22 46782400 46782400 G A CELSR1 Missense_Mutation p.T2213M 0.46 deleterious(0) possibly_damaging(0.908) TCGA-32-2616-01 22 46929701 46929701 C T CELSR1 Missense_Mutation p.V1123M 0.35 deleterious(0.01) possibly_damaging(0.797) TCGA-32-2616-01 22 50278837 50278837 C T ZBED4 Silent p.V509V 0.05 TCGA-32-2616-01 22 50472831 50472831 G A TTLL8 Missense_Mutation p.R348W 0.28 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 22 50664270 50664270 G A TUBGCP6 Missense_Mutation p.R646C 0.43 deleterious(0) probably_damaging(0.984) TCGA-32-2616-01 22 50893709 50893709 C T SBF1 Missense_Mutation p.G1500R 0.28 deleterious(0.01) possibly_damaging(0.872) TCGA-32-2616-01 2 101581340 101581340 C T NPAS2 Silent p.D245D 0.30 TCGA-32-2616-01 2 107040242 107040242 C T RGPD3 Missense_Mutation p.R1394H 0.34 deleterious(0.03) probably_damaging(0.992) TCGA-32-2616-01 2 108609508 108609508 C T SLC5A7 Missense_Mutation p.R125C 0.35 deleterious(0.01) probably_damaging(0.978) TCGA-32-2616-01 2 108921907 108921907 A G SULT1C2 Missense_Mutation p.M223V 0.49 tolerated(0.09) benign(0.034) TCGA-32-2616-01 2 111921820 111921820 C T BCL2L11 3'UTR 0.22 TCGA-32-2616-01 2 112786031 112786031 G A MERTK Missense_Mutation p.V864I 0.39 tolerated(0.14) benign(0.003) TCGA-32-2616-01 2 113286289 113286289 G A TTL Missense_Mutation p.V351M 0.42 deleterious(0) probably_damaging(0.979) TCGA-32-2616-01 2 127818187 127818187 C T BIN1 Intron 0.46 TCGA-32-2616-01 2 127956960 127956960 C T CYP27C1 Missense_Mutation p.V182I 0.25 deleterious(0) probably_damaging(0.986) TCGA-32-2616-01 2 128932405 128932405 G A UGGT1 Missense_Mutation p.R1171H 0.30 deleterious(0) benign(0.372) TCGA-32-2616-01 2 129025966 129025966 G A HS6ST1 Missense_Mutation p.R336C 0.39 deleterious(0.01) possibly_damaging(0.88) TCGA-32-2616-01 2 130877852 130877852 G A POTEF Silent p.N79N 0.32 TCGA-32-2616-01 2 130930454 130930454 C T SMPD4 Silent p.A159A 0.41 TCGA-32-2616-01 2 131688720 131688720 G A ARHGEF4 Missense_Mutation p.V64I 0.33 tolerated_low_confidence(0.65) benign(0) TCGA-32-2616-01 2 136620272 136620272 G A MCM6 Silent p.G375G 0.06 TCGA-32-2616-01 2 145147254 145147254 C T ZEB2 Missense_Mutation p.E1137K 0.03 tolerated(0.79) benign(0.041) TCGA-32-2616-01 2 152544148 152544148 T C NEB Missense_Mutation p.T839A 0.36 benign(0.002) TCGA-32-2616-01 2 152582033 152582033 T C NEB Silent p.P112P 0.38 TCGA-32-2616-01 2 152989998 152989998 G A STAM2 Missense_Mutation p.A267V 0.34 tolerated(0.78) benign(0.003) TCGA-32-2616-01 2 160706598 160706598 G A LY75-CD302 Missense_Mutation p.R1015C 0.37 deleterious(0) probably_damaging(0.988) TCGA-32-2616-01 2 167143116 167143116 C T SCN9A Silent p.A444A 0.41 TCGA-32-2616-01 2 170060721 170060721 G A LRP2 Silent p.A2592A 0.36 TCGA-32-2616-01 2 171056754 171056754 C T MYO3B Missense_Mutation p.A94V 0.26 tolerated(0.06) benign(0.015) TCGA-32-2616-01 2 173356013 173356013 C T ITGA6 Missense_Mutation p.A948V 0.35 tolerated(0.06) possibly_damaging(0.733) TCGA-32-2616-01 2 173368959 173368959 C T ITGA6 Silent p.N1085N 0.29 TCGA-32-2616-01 2 174777899 174777899 C T SP3 Missense_Mutation p.R643H 0.31 deleterious(0.04) benign(0.15) TCGA-32-2616-01 2 179391695 179391695 C T TTN 3'UTR 0.27 TCGA-32-2616-01 2 179536842 179536842 C T TTN Missense_Mutation p.E11695K 0.34 TCGA-32-2616-01 2 179612384 179612384 G A TTN Intron 0.05 TCGA-32-2616-01 2 196571396 196571396 G A SLC39A10 Missense_Mutation p.V425M 0.40 deleterious(0) probably_damaging(1) TCGA-32-2616-01 2 198950305 198950305 C T PLCL1 Silent p.N688N 0.04 TCGA-32-2616-01 2 202211387 202211387 G A ALS2CR12 Silent p.N82N 0.30 TCGA-32-2616-01 2 20402938 20402938 C T SDC1 Missense_Mutation p.V225M 0.41 deleterious(0.03) benign(0.179) TCGA-32-2616-01 2 206610543 206610543 G A NRP2 Missense_Mutation p.R572Q 0.55 deleterious(0.01) benign(0.39) TCGA-32-2616-01 2 207176152 207176152 C T ZDBF2 Silent p.R2300R 0.38 TCGA-32-2616-01 2 207509153 207509153 G A AC010731.4 RNA 0.31 TCGA-32-2616-01 2 209010707 209010707 G A CRYGB Missense_Mutation p.R15C 0.36 deleterious(0) benign(0.417) TCGA-32-2616-01 2 219254615 219254615 G A SLC11A1 Missense_Mutation p.R273H 0.41 tolerated(0.06) benign(0.022) TCGA-32-2616-01 2 219503300 219503300 C T ZNF142 Missense_Mutation p.R1609H 0.59 deleterious(0) possibly_damaging(0.522) TCGA-32-2616-01 2 219529006 219529006 G A RNF25 Missense_Mutation p.R352W 0.40 deleterious(0.02) benign(0.016) TCGA-32-2616-01 2 220347856 220347856 C T SPEG Missense_Mutation p.R1891C 0.33 benign(0.017) TCGA-32-2616-01 2 220414064 220414064 C T TMEM198 Silent p.D311D 0.37 TCGA-32-2616-01 2 223917872 223917872 C T KCNE4 Silent p.S108S 0.41 TCGA-32-2616-01 2 228128508 228128508 C A COL4A3 Missense_Mutation p.P388H 0.07 probably_damaging(0.999) TCGA-32-2616-01 2 230668811 230668811 G A TRIP12 Missense_Mutation p.A853V 0.26 deleterious(0.01) possibly_damaging(0.782) TCGA-32-2616-01 2 230902013 230902013 C T SLC16A14 3'UTR 0.33 TCGA-32-2616-01 2 231042314 231042314 G A SP110 Silent p.N510N 0.32 TCGA-32-2616-01 2 233322546 233322546 G A ALPI Silent p.A275A 0.30 TCGA-32-2616-01 2 234212 234212 C T SH3YL1 Missense_Mutation p.G118R 0.38 deleterious(0) probably_damaging(0.995) TCGA-32-2616-01 2 234854662 234854662 C T TRPM8 Missense_Mutation p.R288C 0.42 deleterious(0) possibly_damaging(0.794) TCGA-32-2616-01 2 235951326 235951326 C T SH3BP4 Missense_Mutation p.P638L 0.06 deleterious(0.03) possibly_damaging(0.854) TCGA-32-2616-01 2 239096809 239096809 C T ILKAP Missense_Mutation p.D130N 0.43 tolerated(0.28) benign(0.394) TCGA-32-2616-01 2 240048291 240048291 C T HDAC4 Missense_Mutation p.R460H 0.28 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 2 241463470 241463470 G A ANKMY1 Missense_Mutation p.T466M 0.39 tolerated(0.05) benign(0.14) TCGA-32-2616-01 2 242433541 242433541 C T FARP2 3'UTR 0.38 TCGA-32-2616-01 2 242741377 242741377 C T GAL3ST2 Missense_Mutation p.R101C 0.33 deleterious(0.05) benign(0.104) TCGA-32-2616-01 2 25064174 25064174 C T ADCY3 Missense_Mutation p.A384T 0.44 deleterious(0.01) probably_damaging(0.946) TCGA-32-2616-01 2 25469573 25469573 C T DNMT3A Missense_Mutation p.V399M 0.06 deleterious(0.04) possibly_damaging(0.507) TCGA-32-2616-01 2 25470497 25470497 C T DNMT3A Missense_Mutation p.R326H 0.30 deleterious(0) probably_damaging(1) TCGA-32-2616-01 2 26705300 26705300 C T OTOF Missense_Mutation p.R518H 0.34 deleterious(0.03) probably_damaging(0.931) TCGA-32-2616-01 2 27665741 27665741 G A KRTCAP3 Silent p.A82A 0.27 TCGA-32-2616-01 2 29240728 29240728 C T FAM179A Silent p.D422D 0.26 TCGA-32-2616-01 2 29258459 29258459 C T FAM179A Silent p.G785G 0.27 TCGA-32-2616-01 2 33623534 33623534 C T LTBP1 Silent p.Y1696Y 0.06 TCGA-32-2616-01 2 3392190 3392190 C T TRAPPC12 Nonsense_Mutation p.R266* 0.42 TCGA-32-2616-01 2 3392215 3392215 C T TRAPPC12 Missense_Mutation p.P274L 0.38 tolerated(0.05) benign(0.121) TCGA-32-2616-01 2 3691651 3691651 C T COLEC11 Silent p.D267D 0.26 TCGA-32-2616-01 2 37873459 37873459 G A CDC42EP3 Missense_Mutation p.S91L 0.32 deleterious(0.04) benign(0.116) TCGA-32-2616-01 2 44528255 44528255 C T SLC3A1 Silent p.P375P 0.29 TCGA-32-2616-01 2 46378314 46378314 C T PRKCE Silent p.D622D 0.40 TCGA-32-2616-01 2 47233789 47233789 C T TTC7A Nonsense_Mutation p.R405* 0.33 TCGA-32-2616-01 2 48026079 48026079 G A MSH6 Silent p.T319T 0.07 TCGA-32-2616-01 2 48874028 48874028 T C STON1-GTF2A1L Silent p.H979H 0.24 TCGA-32-2616-01 2 48897013 48897013 C T STON1-GTF2A1L Silent p.D1081D 0.39 TCGA-32-2616-01 2 60688221 60688221 G A BCL11A Missense_Mutation p.P609L 0.35 deleterious(0) benign(0.246) TCGA-32-2616-01 2 60688530 60688530 G A BCL11A Missense_Mutation p.T506M 0.38 tolerated(0.11) possibly_damaging(0.791) TCGA-32-2616-01 2 61145601 61145601 G A REL Missense_Mutation p.R238H 0.36 deleterious(0) probably_damaging(0.996) TCGA-32-2616-01 2 669467 669467 C T TMEM18 3'UTR 0.41 TCGA-32-2616-01 2 71300689 71300689 G A NAGK Missense_Mutation p.G228S 0.35 tolerated(0.66) benign(0.033) TCGA-32-2616-01 2 71801430 71801430 C T DYSF Missense_Mutation p.R1111C 0.36 deleterious(0.03) probably_damaging(1) TCGA-32-2616-01 2 71827880 71827880 C T DYSF Missense_Mutation p.R1269W 0.34 deleterious(0.02) possibly_damaging(0.827) TCGA-32-2616-01 2 73493767 73493767 G A FBXO41 Missense_Mutation p.R317W 0.06 deleterious(0.03) benign(0.001) TCGA-32-2616-01 2 74274854 74274854 C T TET3 Nonsense_Mutation p.R469* 0.39 TCGA-32-2616-01 2 84518028 84518028 G A FUNDC2P2 RNA 0.25 TCGA-32-2616-01 2 85770138 85770138 C T MAT2A Missense_Mutation p.R356C 0.42 tolerated(0.05) possibly_damaging(0.615) TCGA-32-2616-01 2 85922521 85922521 C T GNLY Missense_Mutation p.P44L 0.08 tolerated(0.16) probably_damaging(0.982) TCGA-32-2616-01 2 89544360 89544360 G A IGKV2-30 Silent p.S88S 0.34 TCGA-32-2616-01 2 95773990 95773990 C T MRPS5 Silent p.R189R 0.32 TCGA-32-2616-01 2 9621457 9621457 C T IAH1 Missense_Mutation p.A109V 0.30 tolerated(0.24) benign(0.067) TCGA-32-2616-01 2 96993786 96993786 C T ITPRIPL1 Missense_Mutation p.R481W 0.43 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 2 97531403 97531403 G A SEMA4C Silent p.V140V 0.43 TCGA-32-2616-01 2 98206033 98206033 A C ANKRD36B RNA 0.41 TCGA-32-2616-01 2 98543914 98543914 C T TMEM131 Missense_Mutation p.R75H 0.36 tolerated(0.67) benign(0.033) TCGA-32-2616-01 2 99413824 99413824 C T KIAA1211L Missense_Mutation p.E865K 0.37 deleterious(0.04) possibly_damaging(0.684) TCGA-32-2616-01 2 99634676 99634676 G A TSGA10 Nonsense_Mutation p.R687* 0.32 TCGA-32-2616-01 2 99634790 99634790 G A TSGA10 Missense_Mutation p.R649C 0.41 deleterious(0) probably_damaging(0.988) TCGA-32-2616-01 3 100948289 100948289 C T IMPG2 Missense_Mutation p.V1190M 0.42 tolerated(0.31) benign(0.002) TCGA-32-2616-01 3 113138872 113138872 C T WDR52 Missense_Mutation p.V188I 0.26 tolerated(0.25) benign(0.001) TCGA-32-2616-01 3 118647521 118647521 G A IGSF11 Missense_Mutation p.R87W 0.36 deleterious(0.01) possibly_damaging(0.893) TCGA-32-2616-01 3 121340875 121340875 G A FBXO40 Missense_Mutation p.R200Q 0.43 deleterious(0.04) benign(0.138) TCGA-32-2616-01 3 127399219 127399219 C T ABTB1 Silent p.H446H 0.47 TCGA-32-2616-01 3 127775619 127775619 C T SEC61A1 Silent p.G96G 0.04 TCGA-32-2616-01 3 129305085 129305085 C T PLXND1 Missense_Mutation p.V551M 0.27 tolerated(0.06) benign(0.066) TCGA-32-2616-01 3 130292946 130292946 G A COL6A6 Missense_Mutation p.A1042T 0.06 deleterious(0) probably_damaging(1) TCGA-32-2616-01 3 130720167 130720167 G A ATP2C1 Intron 0.39 TCGA-32-2616-01 3 133339024 133339024 G A TOPBP1 Nonsense_Mutation p.R1116* 0.33 TCGA-32-2616-01 3 133485219 133485219 C T TF Silent p.T476T 0.35 TCGA-32-2616-01 3 133907706 133907706 T G RYK Missense_Mutation p.K360N 0.42 deleterious(0.02) possibly_damaging(0.452) TCGA-32-2616-01 3 138374301 138374301 G A PIK3CB Missense_Mutation p.A1048V 0.04 deleterious(0) probably_damaging(0.995) TCGA-32-2616-01 3 138453640 138453640 G A PIK3CB Missense_Mutation p.R270W 0.04 tolerated(0.19) possibly_damaging(0.893) TCGA-32-2616-01 3 140406634 140406634 G A TRIM42 Silent p.E370E 0.38 TCGA-32-2616-01 3 14861789 14861789 C T FGD5 Missense_Mutation p.A404V 0.27 tolerated_low_confidence(0.22) benign(0.01) TCGA-32-2616-01 3 14967623 14967623 G A FGD5 Missense_Mutation p.R1372Q 0.40 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 3 161063940 161063940 G A SPTSSB Missense_Mutation p.R58C 0.39 deleterious(0.05) probably_damaging(0.991) TCGA-32-2616-01 3 161221254 161221254 G T OTOL1 Missense_Mutation p.G320C 0.36 deleterious(0) probably_damaging(1) TCGA-32-2616-01 3 170946006 170946006 C T TNIK Missense_Mutation p.R43H 0.32 deleterious(0) unknown(0) TCGA-32-2616-01 3 178916891 178916891 G A PIK3CA Missense_Mutation p.R93Q 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-32-2616-01 3 183273292 183273292 G A KLHL6 Silent p.D50D 0.42 TCGA-32-2616-01 3 183663694 183663694 C T ABCC5 Missense_Mutation p.A1150T 0.39 tolerated(0.08) benign(0.103) TCGA-32-2616-01 3 183663722 183663722 C T ABCC5 Silent p.T1140T 0.38 TCGA-32-2616-01 3 183884672 183884672 C T DVL3 Silent p.T369T 0.37 TCGA-32-2616-01 3 185434691 185434691 C T C3orf65 3'UTR 0.35 TCGA-32-2616-01 3 186978632 186978632 G A MASP1 Silent p.D148D 0.43 TCGA-32-2616-01 3 189526183 189526183 C T TP63 Silent p.Y149Y 0.37 TCGA-32-2616-01 3 195479967 195479967 G A MUC4 Missense_Mutation p.R5155C 0.38 benign(0.006) TCGA-32-2616-01 3 195925716 195925716 G A ZDHHC19 Silent p.F239F 0.37 TCGA-32-2616-01 3 32411405 32411405 C T CMTM8 Silent p.Y156Y 0.40 TCGA-32-2616-01 3 36485023 36485023 G A STAC Silent p.T93T 0.39 TCGA-32-2616-01 3 36887800 36887800 G A TRANK1 Silent p.P1666P 0.40 TCGA-32-2616-01 3 38349158 38349158 G A SLC22A14 Missense_Mutation p.R241H 0.40 deleterious(0.04) benign(0.391) TCGA-32-2616-01 3 38597155 38597155 G A SCN5A Missense_Mutation p.R1512W 0.43 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 3 38616792 38616792 G A SCN5A Missense_Mutation p.A1221V 0.19 deleterious(0) possibly_damaging(0.904) TCGA-32-2616-01 3 38662377 38662377 G A SCN5A Missense_Mutation p.R190W 0.12 deleterious(0.01) probably_damaging(0.999) TCGA-32-2616-01 3 39229734 39229734 G A XIRP1 Silent p.H401H 0.32 TCGA-32-2616-01 3 42569585 42569585 C T VIPR1 Silent p.S202S 0.31 TCGA-32-2616-01 3 45800505 45800505 G A SLC6A20 Missense_Mutation p.R582C 0.45 tolerated(0.07) benign(0.005) TCGA-32-2616-01 3 45804485 45804485 G A SLC6A20 Silent p.N461N 0.35 TCGA-32-2616-01 3 47037919 47037919 C T NBEAL2 Silent p.S770S 0.37 TCGA-32-2616-01 3 48577174 48577174 G A PFKFB4 Missense_Mutation p.R137W 0.34 probably_damaging(1) TCGA-32-2616-01 3 48630245 48630245 G A COL7A1 Missense_Mutation p.T270M 0.25 unknown(0) TCGA-32-2616-01 3 48682624 48682624 C T CELSR3 Missense_Mutation p.A2606T 0.30 deleterious(0.01) probably_damaging(1) TCGA-32-2616-01 3 49842353 49842353 G A FAM212A Missense_Mutation p.R266H 0.35 tolerated(0.14) benign(0.012) TCGA-32-2616-01 3 50229143 50229143 G A GNAT1 5'UTR 0.25 TCGA-32-2616-01 3 51752144 51752144 G A GRM2 3'UTR 0.33 TCGA-32-2616-01 3 52325024 52325024 G A GLYCTK Silent p.A142A 0.47 TCGA-32-2616-01 3 52485773 52485773 G A TNNC1 Missense_Mutation p.R102C 0.35 deleterious(0) benign(0.001) TCGA-32-2616-01 3 52833886 52833886 G A ITIH3 Missense_Mutation p.E342K 0.40 deleterious(0.04) benign(0.06) TCGA-32-2616-01 3 55504243 55504243 G A WNT5A Silent p.C340C 0.41 TCGA-32-2616-01 3 58095023 58095023 G A FLNB Missense_Mutation p.V725M 0.51 deleterious(0.01) possibly_damaging(0.898) TCGA-32-2616-01 3 62636752 62636752 G A CADPS Missense_Mutation p.R325C 0.34 deleterious(0) possibly_damaging(0.689) TCGA-32-2616-01 3 64587669 64587669 C T ADAMTS9 Missense_Mutation p.R1323H 0.32 tolerated(0.06) benign(0.433) TCGA-32-2616-01 3 69230830 69230830 G A FRMD4B Missense_Mutation p.R691W 0.27 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 3 71026114 71026114 C T FOXP1 Missense_Mutation p.R505Q 0.47 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 3 78737895 78737895 C T ROBO1 Missense_Mutation p.R358H 0.41 deleterious(0.03) probably_damaging(0.999) TCGA-32-2616-01 3 98518525 98518525 C T DCBLD2 Silent p.T673T 0.38 TCGA-32-2616-01 3 99514689 99514689 G A COL8A1 Silent p.P648P 0.37 TCGA-32-2616-01 3 9955643 9955643 C T IL17RE Missense_Mutation p.R411W 0.32 deleterious(0) possibly_damaging(0.462) TCGA-32-2616-01 4 113568530 113568531 - A LARP7 Frame_Shift_Ins p.K284Efs*7 0.30 TCGA-32-2616-01 4 114267166 114267166 G A ANK2 Silent p.P1453P 0.39 TCGA-32-2616-01 4 119204145 119204145 C T PRSS12 Missense_Mutation p.D721N 0.37 tolerated(0.2) benign(0.009) TCGA-32-2616-01 4 119951166 119951166 C T SYNPO2 Silent p.Y412Y 0.40 TCGA-32-2616-01 4 121738062 121738062 G A PRDM5 Missense_Mutation p.A223V 0.44 tolerated(0.27) benign(0.003) TCGA-32-2616-01 4 122251600 122251600 G A QRFPR Silent p.V292V 0.28 TCGA-32-2616-01 4 129776925 129776925 C T JADE1 Silent p.H279H 0.42 TCGA-32-2616-01 4 1343527 1343527 C T UVSSA Missense_Mutation p.A105V 0.33 tolerated(1) benign(0.004) TCGA-32-2616-01 4 140441447 140441447 C T SETD7 Missense_Mutation p.R249Q 0.37 deleterious(0.03) probably_damaging(1) TCGA-32-2616-01 4 146029181 146029181 C T ABCE1 Silent p.G68G 0.29 TCGA-32-2616-01 4 154216632 154216632 G A TRIM2 Silent p.L318L 0.45 TCGA-32-2616-01 4 155242234 155242234 T C DCHS2 Silent p.L984L 0.30 TCGA-32-2616-01 4 156837015 156837015 C T TDO2 Missense_Mutation p.R283W 0.26 deleterious(0) probably_damaging(0.985) TCGA-32-2616-01 4 160259594 160259594 G A RAPGEF2 Missense_Mutation p.R595H 0.41 tolerated(0.11) benign(0.411) TCGA-32-2616-01 4 166388900 166388900 C T CPE Missense_Mutation p.R189W 0.04 deleterious(0.02) benign(0.122) TCGA-32-2616-01 4 166935637 166935637 C T TLL1 Missense_Mutation p.R323C 0.30 deleterious(0) probably_damaging(0.946) TCGA-32-2616-01 4 1746445 1746445 C T TACC3 Silent p.N779N 0.50 TCGA-32-2616-01 4 185018456 185018456 C T ENPP6 Nonsense_Mutation p.W353* 0.05 TCGA-32-2616-01 4 186423500 186423500 C T PDLIM3 Missense_Mutation p.R348H 0.33 deleterious(0.03) probably_damaging(1) TCGA-32-2616-01 4 187630123 187630123 C T FAT1 Missense_Mutation p.G287S 0.04 probably_damaging(0.998) TCGA-32-2616-01 4 189026443 189026443 C T TRIML2 5'UTR 0.41 TCGA-32-2616-01 4 189060921 189060921 G A TRIML1 Missense_Mutation p.R70H 0.33 deleterious(0.03) benign(0.022) TCGA-32-2616-01 4 20599946 20599946 C T SLIT2 Missense_Mutation p.A1207V 0.40 deleterious(0) possibly_damaging(0.542) TCGA-32-2616-01 4 265557 265557 T A ZNF732 Missense_Mutation p.K363N 0.48 deleterious(0.01) probably_damaging(0.989) TCGA-32-2616-01 4 2691314 2691314 A T FAM193A Missense_Mutation p.S514C 0.44 deleterious(0) probably_damaging(0.994) TCGA-32-2616-01 4 2746624 2746624 C T TNIP2 Missense_Mutation p.E236K 0.36 deleterious(0.03) probably_damaging(1) TCGA-32-2616-01 4 3317926 3317926 G A RGS12 Missense_Mutation p.R10H 0.32 deleterious(0) probably_damaging(0.964) TCGA-32-2616-01 4 38016430 38016430 G A TBC1D1 Missense_Mutation p.G240S 0.31 tolerated(0.22) probably_damaging(0.989) TCGA-32-2616-01 4 47033989 47033989 G T GABRB1 Nonsense_Mutation p.G47* 0.38 TCGA-32-2616-01 4 515807 515807 G A PIGG Intron 0.39 TCGA-32-2616-01 4 5624613 5624613 C T EVC2 Missense_Mutation p.G718S 0.37 tolerated(1) benign(0.003) TCGA-32-2616-01 4 5642255 5642255 G A EVC2 Missense_Mutation p.R486C 0.33 deleterious(0.03) benign(0.091) TCGA-32-2616-01 4 57899426 57899426 G A IGFBP7 Missense_Mutation p.R213W 0.26 deleterious(0) probably_damaging(0.996) TCGA-32-2616-01 4 6082017 6082017 G A JAKMIP1 Missense_Mutation p.A375V 0.31 tolerated(0.34) benign(0.044) TCGA-32-2616-01 4 619588 619588 C T PDE6B Missense_Mutation p.A58V 0.33 tolerated(0.41) benign(0.002) TCGA-32-2616-01 4 6377611 6377611 C T PPP2R2C Missense_Mutation p.E128K 0.40 tolerated(0.26) benign(0.017) TCGA-32-2616-01 4 672771 672771 C T MYL5 Nonsense_Mutation p.R46* 0.28 TCGA-32-2616-01 4 6863800 6863800 G A KIAA0232 Missense_Mutation p.R564H 0.41 tolerated(0.08) possibly_damaging(0.839) TCGA-32-2616-01 4 70455098 70455098 T - UGT2A1 Frame_Shift_Del p.R692Efs*57 0.23 TCGA-32-2616-01 4 73149113 73149113 G A ADAMTS3 Missense_Mutation p.P1120S 0.38 tolerated_low_confidence(0.2) benign(0) TCGA-32-2616-01 4 73414301 73414301 G A ADAMTS3 Missense_Mutation p.T133M 0.39 deleterious(0.03) possibly_damaging(0.555) TCGA-32-2616-01 4 7684553 7684553 C T SORCS2 Silent p.R475R 0.31 TCGA-32-2616-01 4 82095946 82095946 C A PRKG2 Splice_Site p.X210_splice 0.29 TCGA-32-2616-01 4 8294059 8294059 C T HTRA3 Silent p.S305S 0.27 TCGA-32-2616-01 4 8620162 8620162 C T CPZ Missense_Mutation p.R504W 0.42 deleterious(0) probably_damaging(0.993) TCGA-32-2616-01 4 88766794 88766794 C T MEPE Silent p.D258D 0.07 TCGA-32-2616-01 4 89183648 89183648 C T PPM1K 3'UTR 0.19 TCGA-32-2616-01 4 89618766 89618766 G A NAP1L5 Missense_Mutation p.A47V 0.38 tolerated(0.96) unknown(0) TCGA-32-2616-01 4 90872783 90872783 C T MMRN1 Missense_Mutation p.P1049L 0.32 deleterious(0) probably_damaging(1) TCGA-32-2616-01 4 96163632 96163632 G A UNC5C Silent p.C352C 0.35 TCGA-32-2616-01 5 100222290 100222290 C T ST8SIA4 Missense_Mutation p.R87H 0.30 benign(0.099) TCGA-32-2616-01 5 101735259 101735259 C T SLCO6A1 Missense_Mutation p.R605Q 0.38 tolerated(0.1) benign(0.144) TCGA-32-2616-01 5 1034387 1034387 G A NKD2 Missense_Mutation p.R123H 0.22 tolerated(0.05) benign(0.035) TCGA-32-2616-01 5 10417404 10417404 C T MARCH6 Missense_Mutation p.A724V 0.19 tolerated(0.39) benign(0.025) TCGA-32-2616-01 5 1073885 1073885 C T SLC12A7 Missense_Mutation p.A702T 0.24 tolerated(0.29) benign(0.001) TCGA-32-2616-01 5 110446899 110446899 C T WDR36 Silent p.F602F 0.05 TCGA-32-2616-01 5 112174802 112174802 C T APC Missense_Mutation p.R1171C 0.27 benign(0.009) TCGA-32-2616-01 5 125807976 125807976 C T GRAMD3 Missense_Mutation p.T136M 0.33 deleterious(0.05) benign(0.149) TCGA-32-2616-01 5 127681064 127681064 G A FBN2 Missense_Mutation p.R1068W 0.36 deleterious(0) possibly_damaging(0.836) TCGA-32-2616-01 5 129039971 129039971 G A ADAMTS19 Missense_Mutation p.V1061I 0.08 tolerated(0.11) benign(0.05) TCGA-32-2616-01 5 130721242 130721242 C T CDC42SE2 Nonsense_Mutation p.R21* 0.26 TCGA-32-2616-01 5 131014837 131014837 G A FNIP1 Nonsense_Mutation p.R412* 0.29 TCGA-32-2616-01 5 1318520 1318520 G A CLPTM1L Silent p.Y527Y 0.23 TCGA-32-2616-01 5 132535094 132535094 C T FSTL4 Missense_Mutation p.R741H 0.30 tolerated(0.09) benign(0.002) TCGA-32-2616-01 5 133914602 133914602 G A JADE2 Silent p.P656P 0.31 TCGA-32-2616-01 5 13719110 13719110 C T DNAH5 Missense_Mutation p.R4127H 0.19 possibly_damaging(0.812) TCGA-32-2616-01 5 137235266 137235266 C T PKD2L2 Nonsense_Mutation p.R196* 0.33 TCGA-32-2616-01 5 137721891 137721891 C T KDM3B Nonsense_Mutation p.R321* 0.06 TCGA-32-2616-01 5 13919420 13919420 G A DNAH5 Silent p.D280D 0.27 TCGA-32-2616-01 5 140011588 140011588 G A CD14 Silent p.D327D 0.37 TCGA-32-2616-01 5 140011776 140011776 C T CD14 Missense_Mutation p.V265I 0.35 deleterious(0.04) benign(0.001) TCGA-32-2616-01 5 140229690 140229690 C T PCDHA9 Missense_Mutation p.A537V 0.37 deleterious_low_confidence(0.01) probably_damaging(0.969) TCGA-32-2616-01 5 140250760 140250760 C T PCDHA11 Missense_Mutation p.A691V 0.06 tolerated_low_confidence(0.09) benign(0.023) TCGA-32-2616-01 5 140256159 140256159 G A PCDHA12 Missense_Mutation p.V368I 0.38 deleterious_low_confidence(0.03) possibly_damaging(0.621) TCGA-32-2616-01 5 140256509 140256509 G A PCDHA12 Silent p.A484A 0.05 TCGA-32-2616-01 5 140481942 140481942 C T PCDHB3 Missense_Mutation p.A570V 0.39 tolerated_low_confidence(0.05) benign(0.196) TCGA-32-2616-01 5 140502976 140502976 G A PCDHB4 Missense_Mutation p.A466T 0.30 deleterious_low_confidence(0) possibly_damaging(0.848) TCGA-32-2616-01 5 140574159 140574159 G A PCDHB10 Silent p.P678P 0.50 TCGA-32-2616-01 5 140712464 140712464 C T PCDHGA1 Missense_Mutation p.S738L 0.28 deleterious_low_confidence(0) benign(0.082) TCGA-32-2616-01 5 140802950 140802950 G A PCDHGA11 Missense_Mutation p.R719H 0.44 tolerated_low_confidence(0.11) benign(0.055) TCGA-32-2616-01 5 141005844 141005844 G A HDAC3 Silent p.C279C 0.33 TCGA-32-2616-01 5 141051787 141051787 G A ARAP3 Silent p.Y489Y 0.04 TCGA-32-2616-01 5 141244836 141244836 G A PCDH1 Missense_Mutation p.R354C 0.04 deleterious(0) probably_damaging(0.932) TCGA-32-2616-01 5 141304155 141304155 G A KIAA0141 Missense_Mutation p.R14H 0.26 tolerated(0.13) unknown(0) TCGA-32-2616-01 5 14374421 14374421 G A TRIO Silent p.T1100T 0.33 TCGA-32-2616-01 5 14502690 14502690 C T TRIO Missense_Mutation p.P2779S 0.26 unknown(0) TCGA-32-2616-01 5 1494910 1494910 G A LPCAT1 Missense_Mutation p.A133V 0.24 deleterious(0) probably_damaging(1) TCGA-32-2616-01 5 149677547 149677547 G A ARSI Missense_Mutation p.R314C 0.38 tolerated(0.08) benign(0.329) TCGA-32-2616-01 5 150565043 150565043 G A CCDC69 Silent p.I185I 0.36 TCGA-32-2616-01 5 150901609 150901609 C T FAT2 Silent p.T3515T 0.34 TCGA-32-2616-01 5 154183199 154183199 G A LARP1 Missense_Mutation p.R701H 0.09 tolerated(0.77) probably_damaging(0.991) TCGA-32-2616-01 5 156665173 156665173 G A ITK Missense_Mutation p.V275M 0.06 deleterious(0.01) possibly_damaging(0.641) TCGA-32-2616-01 5 157182096 157182096 C T LSM11 Missense_Mutation p.R303W 0.37 deleterious(0) possibly_damaging(0.825) TCGA-32-2616-01 5 159830336 159830336 G A SLU7 Missense_Mutation p.R573C 0.03 deleterious(0.02) benign(0.043) TCGA-32-2616-01 5 159835379 159835379 C T SLU7 Missense_Mutation p.R259Q 0.40 deleterious(0.02) benign(0.43) TCGA-32-2616-01 5 167689238 167689238 C T TENM2 Missense_Mutation p.T2583M 0.57 deleterious(0) probably_damaging(0.97) TCGA-32-2616-01 5 168114030 168114030 C T SLIT3 Missense_Mutation p.V1090M 0.35 tolerated(0.07) benign(0.183) TCGA-32-2616-01 5 169026044 169026044 G A SPDL1 Missense_Mutation p.R402Q 0.35 deleterious(0.01) benign(0.197) TCGA-32-2616-01 5 169230209 169230209 C T DOCK2 Missense_Mutation p.A901V 0.05 tolerated(1) benign(0) TCGA-32-2616-01 5 171296744 171296744 G A FBXW11 Missense_Mutation p.R486C 0.09 tolerated(0.08) benign(0.071) TCGA-32-2616-01 5 175927121 175927121 C T FAF2 Nonsense_Mutation p.R377* 0.38 TCGA-32-2616-01 5 176005058 176005058 G A CDHR2 Silent p.A512A 0.40 TCGA-32-2616-01 5 176795187 176795187 C T RGS14 Missense_Mutation p.R257C 0.06 deleterious(0) probably_damaging(0.915) TCGA-32-2616-01 5 178413710 178413710 C T GRM6 Silent p.S515S 0.31 TCGA-32-2616-01 5 178416105 178416105 G A GRM6 Silent p.Y395Y 0.37 TCGA-32-2616-01 5 179676007 179676007 G A MAPK9 Silent p.P194P 0.34 TCGA-32-2616-01 5 179707569 179707569 C T MAPK9 5'UTR 0.29 TCGA-32-2616-01 5 180052980 180052980 C T FLT4 Missense_Mutation p.R437H 0.29 tolerated(0.43) benign(0.035) TCGA-32-2616-01 5 180056334 180056334 C T FLT4 Missense_Mutation p.D304N 0.32 deleterious(0.03) possibly_damaging(0.577) TCGA-32-2616-01 5 180376254 180376254 G A BTNL8 Missense_Mutation p.R284Q 0.05 tolerated(0.98) benign(0.054) TCGA-32-2616-01 5 180377103 180377103 C T BTNL8 Silent p.R354R 0.37 TCGA-32-2616-01 5 31323238 31323238 C T CDH6 Silent p.Y732Y 0.25 TCGA-32-2616-01 5 31526340 31526340 G A DROSHA Nonsense_Mutation p.R234* 0.29 TCGA-32-2616-01 5 34998924 34998924 C T AGXT2 Missense_Mutation p.R482H 0.29 deleterious(0) probably_damaging(0.996) TCGA-32-2616-01 5 37352892 37352892 G A NUP155 Missense_Mutation p.A168V 0.27 deleterious(0) possibly_damaging(0.654) TCGA-32-2616-01 5 37815942 37815942 G A GDNF Silent p.C166C 0.29 TCGA-32-2616-01 5 40692145 40692145 C T PTGER4 Missense_Mutation p.R378C 0.21 deleterious(0.03) possibly_damaging(0.719) TCGA-32-2616-01 5 40950059 40950059 G A C7 Missense_Mutation p.V346I 0.28 tolerated(0.49) benign(0.001) TCGA-32-2616-01 5 41032909 41032909 G A MROH2B Silent p.D792D 0.33 TCGA-32-2616-01 5 41058234 41058234 G A MROH2B Silent p.Y229Y 0.24 TCGA-32-2616-01 5 41149449 41149449 G A C6 Silent p.D839D 0.30 TCGA-32-2616-01 5 41382462 41382462 C T PLCXD3 Missense_Mutation p.R93H 0.31 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 5 42700022 42700022 G A GHR Missense_Mutation p.R179H 0.21 deleterious(0) benign(0.004) TCGA-32-2616-01 5 453622 453622 C T EXOC3 Missense_Mutation p.R168C 0.20 tolerated(0.1) probably_damaging(0.973) TCGA-32-2616-01 5 457036 457036 C T EXOC3 Missense_Mutation p.P360L 0.22 tolerated(0.29) probably_damaging(0.995) TCGA-32-2616-01 5 54696073 54696073 C T SKIV2L2 Missense_Mutation p.R769C 0.06 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 5 55407274 55407274 G A ANKRD55 Missense_Mutation p.T434M 0.35 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-32-2616-01 5 56218976 56218976 G A MIER3 Silent p.H543H 0.29 TCGA-32-2616-01 5 59982888 59982888 G A DEPDC1B Missense_Mutation p.T72M 0.04 deleterious(0) probably_damaging(1) TCGA-32-2616-01 5 624588 624588 G A CEP72 Missense_Mutation p.D136N 0.26 tolerated(0.11) benign(0.28) TCGA-32-2616-01 5 64887634 64887634 G A TRIM23 Missense_Mutation p.R563W 0.06 deleterious(0) probably_damaging(0.996) TCGA-32-2616-01 5 66459153 66459153 G A MAST4 Silent p.T1382T 0.45 TCGA-32-2616-01 5 71493401 71493401 G A MAP1B Missense_Mutation p.E1407K 0.11 possibly_damaging(0.819) TCGA-32-2616-01 5 71496184 71496184 C T MAP1B Silent p.T2334T 0.05 TCGA-32-2616-01 5 73931996 73931996 C T ENC1 Silent p.A105A 0.03 TCGA-32-2616-01 5 80476075 80476075 G A RASGRF2 Missense_Mutation p.R923H 0.48 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 5 86627205 86627205 C T RASA1 Missense_Mutation p.R194C 0.05 deleterious(0.04) probably_damaging(0.997) TCGA-32-2616-01 5 88047697 88047697 C T MEF2C Missense_Mutation p.R207Q 0.04 deleterious(0.02) probably_damaging(0.997) TCGA-32-2616-01 5 89791518 89791518 A G POLR3G Missense_Mutation p.Y91C 0.04 deleterious(0.02) possibly_damaging(0.513) TCGA-32-2616-01 5 96079350 96079350 C T CAST Intron 0.10 TCGA-32-2616-01 5 96503403 96503403 G A RIOK2 Missense_Mutation p.R389W 0.39 deleterious(0.01) benign(0.2) TCGA-32-2616-01 6 100960736 100960736 G A ASCC3 Missense_Mutation p.S2045L 0.37 tolerated(0.39) benign(0.003) TCGA-32-2616-01 6 109220926 109220926 G A ARMC2 Missense_Mutation p.A260T 0.37 tolerated(1) benign(0) TCGA-32-2616-01 6 121768113 121768113 G A GJA1 Silent p.A40A 0.06 TCGA-32-2616-01 6 128134650 128134650 T A THEMIS Missense_Mutation p.K379M 0.07 deleterious(0) possibly_damaging(0.632) TCGA-32-2616-01 6 136680994 136680994 C T MAP7 Missense_Mutation p.G648S 0.34 deleterious(0.01) unknown(0) TCGA-32-2616-01 6 136682177 136682177 C T MAP7 Missense_Mutation p.R578H 0.53 deleterious(0.03) unknown(0) TCGA-32-2616-01 6 138417544 138417544 C T PERP Missense_Mutation p.G101E 0.36 tolerated(1) possibly_damaging(0.845) TCGA-32-2616-01 6 138550943 138550943 C T KIAA1244 Missense_Mutation p.T125M 0.30 deleterious(0.01) possibly_damaging(0.712) TCGA-32-2616-01 6 138599680 138599680 G A KIAA1244 Missense_Mutation p.A741T 0.39 tolerated(0.26) benign(0.005) TCGA-32-2616-01 6 138657552 138657552 G A KIAA1244 Missense_Mutation p.D2155N 0.24 tolerated(0.23) probably_damaging(0.994) TCGA-32-2616-01 6 147680335 147680335 G A STXBP5 Silent p.T807T 0.35 TCGA-32-2616-01 6 149795574 149795574 C T ZC3H12D Missense_Mutation p.V36M 0.34 deleterious(0.02) possibly_damaging(0.488) TCGA-32-2616-01 6 150343138 150343138 C T RAET1L Silent p.Q109Q 0.03 TCGA-32-2616-01 6 151265690 151265690 C T MTHFD1L Silent p.I503I 0.45 TCGA-32-2616-01 6 151865790 151865790 G A CCDC170 Missense_Mutation p.R176H 0.24 tolerated(0.69) benign(0.001) TCGA-32-2616-01 6 160679641 160679641 C T SLC22A2 Missense_Mutation p.R50H 0.35 tolerated(0.59) benign(0.012) TCGA-32-2616-01 6 16328079 16328079 C T ATXN1 Missense_Mutation p.V155I 0.35 tolerated_low_confidence(0.07) benign(0.074) TCGA-32-2616-01 6 166571939 166571939 G A T Missense_Mutation p.S391L 0.35 tolerated(0.18) benign(0.047) TCGA-32-2616-01 6 168281192 168281192 G A MLLT4 Missense_Mutation p.A298T 0.04 tolerated(0.13) possibly_damaging(0.617) TCGA-32-2616-01 6 169625300 169625300 C T THBS2 Missense_Mutation p.V905I 0.11 tolerated(1) benign(0.003) TCGA-32-2616-01 6 170033072 170033072 G A WDR27 Missense_Mutation p.R732W 0.61 deleterious(0) possibly_damaging(0.597) TCGA-32-2616-01 6 22287585 22287585 C T PRL 3'UTR 0.37 TCGA-32-2616-01 6 26545514 26545514 G A HMGN4 Missense_Mutation p.R27Q 0.35 deleterious(0.01) probably_damaging(0.968) TCGA-32-2616-01 6 2840792 2840792 C T SERPINB1 Missense_Mutation p.R10H 0.37 tolerated(0.21) benign(0.005) TCGA-32-2616-01 6 30876910 30876910 C T GTF2H4 Nonsense_Mutation p.R33* 0.46 TCGA-32-2616-01 6 30899198 30899198 C T SFTA2 3'UTR 0.26 TCGA-32-2616-01 6 31592112 31592112 C T PRRC2A Missense_Mutation p.P122L 0.38 unknown(0) TCGA-32-2616-01 6 31741200 31741201 - T VWA7 Frame_Shift_Ins p.G246Rfs*5 0.32 TCGA-32-2616-01 6 31752211 31752211 G A VARS Silent p.F512F 0.36 TCGA-32-2616-01 6 31867692 31867692 C T ZBTB12 3'UTR 0.31 TCGA-32-2616-01 6 31867757 31867757 C T ZBTB12 Silent p.T442T 0.07 TCGA-32-2616-01 6 31867957 31867957 G A ZBTB12 Missense_Mutation p.R376C 0.18 deleterious(0) possibly_damaging(0.748) TCGA-32-2616-01 6 31937073 31937073 G A SKIV2L Missense_Mutation p.R1139Q 0.38 tolerated(0.59) benign(0.007) TCGA-32-2616-01 6 31962459 31962459 C T C4A Missense_Mutation p.A926V 0.11 deleterious(0.02) benign(0.112) TCGA-32-2616-01 6 32016360 32016360 C T TNXB 5'Flank 0.18 TCGA-32-2616-01 6 32063727 32063727 G A TNXB Missense_Mutation p.R635C 0.26 probably_damaging(0.988) TCGA-32-2616-01 6 32087683 32087683 G A ATF6B Missense_Mutation p.P295L 0.44 tolerated(0.87) benign(0.003) TCGA-32-2616-01 6 32138331 32138331 G A AGPAT1 Silent p.R127R 0.34 TCGA-32-2616-01 6 32182013 32182013 C T NOTCH4 Missense_Mutation p.V681M 0.32 tolerated(0.18) benign(0.02) TCGA-32-2616-01 6 32818837 32818837 G A TAP1 Nonsense_Mutation p.R372* 0.35 TCGA-32-2616-01 6 33133752 33133752 C T COL11A2 Missense_Mutation p.G1394R 0.37 unknown(0) TCGA-32-2616-01 6 33136507 33136507 G A COL11A2 Silent p.G1208G 0.44 TCGA-32-2616-01 6 33561073 33561073 A G GGNBP1 3'Flank 0.13 TCGA-32-2616-01 6 33638474 33638474 G A ITPR3 Missense_Mutation p.R823Q 0.32 deleterious(0.05) possibly_damaging(0.851) TCGA-32-2616-01 6 33638566 33638566 G A ITPR3 Missense_Mutation p.E854K 0.43 tolerated(1) benign(0.003) TCGA-32-2616-01 6 34392454 34392454 C T RPS10 Missense_Mutation p.R105Q 0.42 tolerated(0.2) benign(0.01) TCGA-32-2616-01 6 36175166 36175166 G A BRPF3 Missense_Mutation p.R561Q 0.42 deleterious(0) possibly_damaging(0.666) TCGA-32-2616-01 6 37186731 37186731 C T TMEM217 Missense_Mutation p.V26I 0.41 deleterious(0.03) benign(0.059) TCGA-32-2616-01 6 37606004 37606004 C T MDGA1 Missense_Mutation p.R918Q 0.37 tolerated(0.43) probably_damaging(0.992) TCGA-32-2616-01 6 39877665 39877665 C T MOCS1 Missense_Mutation p.R339Q 0.34 deleterious(0) probably_damaging(0.964) TCGA-32-2616-01 6 41655728 41655728 G A TFEB Silent p.S196S 0.25 TCGA-32-2616-01 6 41739174 41739174 G A FRS3 Missense_Mutation p.P221L 0.44 tolerated(0.05) benign(0.002) TCGA-32-2616-01 6 42210995 42210995 G A TRERF1 Silent p.D950D 0.42 TCGA-32-2616-01 6 42232483 42232483 G A TRERF1 Missense_Mutation p.R532W 0.36 deleterious(0) possibly_damaging(0.898) TCGA-32-2616-01 6 42541618 42541618 G A UBR2 Nonsense_Mutation p.W75* 0.40 TCGA-32-2616-01 6 43011257 43011257 C T CUL7 Missense_Mutation p.R1179H 0.41 deleterious(0.01) benign(0.316) TCGA-32-2616-01 6 43024135 43024135 C T MRPL2 Missense_Mutation p.R105Q 0.39 deleterious(0.03) probably_damaging(0.937) TCGA-32-2616-01 6 43307657 43307657 C T ZNF318 Missense_Mutation p.R1360H 0.44 probably_damaging(1) TCGA-32-2616-01 6 43466718 43466718 G A TJAP1 5'UTR 0.26 TCGA-32-2616-01 6 43471424 43471424 C T TJAP1 Nonsense_Mutation p.R187* 0.18 TCGA-32-2616-01 6 43492672 43492672 G A XPO5 Missense_Mutation p.T1070M 0.40 deleterious(0.04) possibly_damaging(0.73) TCGA-32-2616-01 6 43749782 43749782 G A VEGFA Missense_Mutation p.R392H 0.33 tolerated(0.11) possibly_damaging(0.755) TCGA-32-2616-01 6 44269874 44269874 G A AARS2 Missense_Mutation p.R841W 0.30 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 6 50712963 50712963 T C TFAP2D Splice_Site p.X342_splice 0.33 TCGA-32-2616-01 6 52137139 52137139 C T MCM3 Missense_Mutation p.R641H 0.08 tolerated(0.06) probably_damaging(0.93) TCGA-32-2616-01 6 52998947 52998947 C T GCM1 Missense_Mutation p.R84H 0.33 tolerated(0.21) benign(0.003) TCGA-32-2616-01 6 55216179 55216179 T A GFRAL Missense_Mutation p.C167S 0.39 deleterious(0) probably_damaging(1) TCGA-32-2616-01 6 55216343 55216343 C T GFRAL Silent p.L221L 0.33 TCGA-32-2616-01 6 55739519 55739519 G A BMP5 Missense_Mutation p.R49W 0.37 deleterious(0) possibly_damaging(0.626) TCGA-32-2616-01 6 56342221 56342221 G A DST Silent p.T4576T 0.45 TCGA-32-2616-01 6 57244795 57244795 G C PRIM2 Splice_Site p.X185_splice 0.17 TCGA-32-2616-01 6 7405157 7405157 C T RIOK1 Silent p.H333H 0.34 TCGA-32-2616-01 6 74528201 74528201 C T CD109 Silent p.S1334S 0.44 TCGA-32-2616-01 6 76405594 76405594 G A SENP6 Missense_Mutation p.R717H 0.31 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 6 80635972 80635972 C T ELOVL4 Missense_Mutation p.R76H 0.34 deleterious(0.03) probably_damaging(0.985) TCGA-32-2616-01 6 83905822 83905822 G A RWDD2A Missense_Mutation p.R237H 0.41 tolerated(0.14) benign(0.443) TCGA-32-2616-01 6 84234464 84234464 G A PRSS35 3'UTR 0.16 TCGA-32-2616-01 6 88854953 88854953 C T CNR1 Missense_Mutation p.R14H 0.39 deleterious_low_confidence(0.01) possibly_damaging(0.834) TCGA-32-2616-01 6 90482424 90482424 C T MDN1 Missense_Mutation p.A651T 0.42 probably_damaging(0.974) TCGA-32-2616-01 6 96054070 96054070 G A MANEA Missense_Mutation p.R393H 0.10 tolerated(0.21) benign(0.002) TCGA-32-2616-01 6 97533141 97533141 C T KLHL32 Missense_Mutation p.T184M 0.33 tolerated(0.06) benign(0.161) TCGA-32-2616-01 7 100018289 100018289 G A ZCWPW1 5'UTR 0.14 TCGA-32-2616-01 7 100355868 100355868 G A ZAN Missense_Mutation p.R1118H 0.20 unknown(0) TCGA-32-2616-01 7 100382334 100382334 G A ZAN Missense_Mutation p.A2237T 0.22 unknown(0) TCGA-32-2616-01 7 100390155 100390155 G A ZAN Missense_Mutation p.R2613H 0.24 unknown(0) TCGA-32-2616-01 7 100663439 100663439 C T MUC17 Missense_Mutation p.A8V 0.20 benign(0.007) TCGA-32-2616-01 7 100732337 100732337 C T TRIM56 Missense_Mutation p.R582C 0.17 deleterious(0) probably_damaging(0.989) TCGA-32-2616-01 7 101892330 101892330 C T CUX1 3'UTR 0.40 TCGA-32-2616-01 7 101926401 101926401 G A SH2B2 5'Flank 0.18 TCGA-32-2616-01 7 102109420 102109420 G A LRWD1 Missense_Mutation p.R380H 0.24 deleterious(0.01) possibly_damaging(0.891) TCGA-32-2616-01 7 1028083 1028083 C T CYP2W1 Intron 0.09 TCGA-32-2616-01 7 103003857 103003857 C T PSMC2 Nonsense_Mutation p.R188* 0.19 TCGA-32-2616-01 7 105187707 105187707 C T RINT1 Nonsense_Mutation p.R256* 0.20 TCGA-32-2616-01 7 106508239 106508239 C T PIK3CG Missense_Mutation p.A78V 0.21 tolerated(0.33) benign(0.031) TCGA-32-2616-01 7 106797744 106797744 C T PRKAR2B Silent p.H366H 0.22 TCGA-32-2616-01 7 108213555 108213555 C T DNAJB9 Missense_Mutation p.R144C 0.22 deleterious(0) benign(0.386) TCGA-32-2616-01 7 117171028 117171028 C T CFTR Missense_Mutation p.R117C 0.26 deleterious(0) probably_damaging(0.997) TCGA-32-2616-01 7 117232500 117232500 C T CFTR Missense_Mutation p.T760M 0.17 tolerated(0.29) benign(0.009) TCGA-32-2616-01 7 117307051 117307051 C T CFTR Silent p.S1444S 0.18 TCGA-32-2616-01 7 127732167 127732167 G A SND1 3'UTR 0.24 TCGA-32-2616-01 7 128477745 128477745 C T FLNC Missense_Mutation p.T302M 0.29 deleterious(0) probably_damaging(1) TCGA-32-2616-01 7 128630039 128630039 C T TNPO3 Missense_Mutation p.V492I 0.24 tolerated(1) benign(0.002) TCGA-32-2616-01 7 134216744 134216744 G A AKR1B10 Missense_Mutation p.V107I 0.21 tolerated(0.09) benign(0.002) TCGA-32-2616-01 7 134870957 134870957 G A WDR91 Silent p.T730T 0.18 TCGA-32-2616-01 7 138946041 138946041 C T UBN2 Missense_Mutation p.R317C 0.16 deleterious(0) probably_damaging(0.988) TCGA-32-2616-01 7 139655298 139655298 G A TBXAS1 Missense_Mutation p.A241T 0.24 deleterious(0.03) possibly_damaging(0.595) TCGA-32-2616-01 7 141708397 141708397 G T MGAM Silent p.T73T 0.18 TCGA-32-2616-01 7 141955055 141955055 T C PRSS58 Missense_Mutation p.K86E 0.21 deleterious(0.01) possibly_damaging(0.864) TCGA-32-2616-01 7 142149172 142149172 C T TRBV5-5 Silent p.T33T 0.20 TCGA-32-2616-01 7 142568005 142568005 G A EPHB6 Silent p.P882P 0.18 TCGA-32-2616-01 7 142605801 142605801 C T TRPV5 Missense_Mutation p.R690Q 0.18 tolerated(0.28) probably_damaging(0.938) TCGA-32-2616-01 7 142609915 142609915 C T TRPV5 Silent p.A507A 0.20 TCGA-32-2616-01 7 142659426 142659426 G A KEL 5'UTR 0.13 TCGA-32-2616-01 7 142997382 142997382 G A CASP2 Missense_Mutation p.R321H 0.25 deleterious(0) probably_damaging(1) TCGA-32-2616-01 7 143039032 143039032 G A CLCN1 Silent p.A531A 0.24 TCGA-32-2616-01 7 143573416 143573416 G T FAM115A Missense_Mutation p.P96T 0.23 tolerated(0.34) benign(0.002) TCGA-32-2616-01 7 144096880 144096880 G A NOBOX Missense_Mutation p.A375V 0.25 tolerated(0.11) possibly_damaging(0.496) TCGA-32-2616-01 7 147600758 147600758 C T CNTNAP2 Missense_Mutation p.R734C 0.24 deleterious(0.03) possibly_damaging(0.786) TCGA-32-2616-01 7 148427293 148427293 G A CUL1 Missense_Mutation p.G27S 0.21 deleterious(0.01) probably_damaging(0.989) TCGA-32-2616-01 7 149477534 149477534 C T SSPO RNA 0.10 TCGA-32-2616-01 7 149545205 149545205 C T ZNF862 Missense_Mutation p.A208V 0.17 deleterious_low_confidence(0.01) possibly_damaging(0.558) TCGA-32-2616-01 7 150269373 150269373 G A GIMAP4 Missense_Mutation p.R72H 0.06 tolerated(0.12) benign(0.022) TCGA-32-2616-01 7 150553626 150553626 C T AOC1 Missense_Mutation p.P23L 0.30 tolerated(0.35) benign(0.002) TCGA-32-2616-01 7 150835305 150835305 G A AGAP3 Missense_Mutation p.R524H 0.17 tolerated(0.07) benign(0.009) TCGA-32-2616-01 7 157959937 157959937 G A PTPRN2 Missense_Mutation p.T199M 0.17 deleterious(0.01) possibly_damaging(0.572) TCGA-32-2616-01 7 20193951 20193951 A G MACC1 Silent p.A737A 0.19 TCGA-32-2616-01 7 21744104 21744104 A G DNAH11 Missense_Mutation p.D2116G 0.23 probably_damaging(1) TCGA-32-2616-01 7 22532994 22532994 G A STEAP1B Silent p.Y182Y 0.19 TCGA-32-2616-01 7 23351941 23351941 G C IGF2BP3 3'UTR 0.03 TCGA-32-2616-01 7 23729055 23729055 C T FAM221A Missense_Mutation p.A136V 0.19 tolerated(0.11) benign(0.013) TCGA-32-2616-01 7 2622254 2622254 A T IQCE Missense_Mutation p.Q224L 0.09 deleterious(0) possibly_damaging(0.889) TCGA-32-2616-01 7 2959122 2959122 G A CARD11 Silent p.D798D 0.25 TCGA-32-2616-01 7 2998203 2998203 G A CARD11 5'UTR 0.21 TCGA-32-2616-01 7 30492246 30492246 G A NOD1 Missense_Mutation p.R263W 0.23 tolerated(0.18) benign(0.443) TCGA-32-2616-01 7 30704716 30704716 G A CRHR2 Silent p.L198L 0.16 TCGA-32-2616-01 7 31735207 31735207 G A PPP1R17 Silent p.P69P 0.20 TCGA-32-2616-01 7 31864484 31864484 G A PDE1C Missense_Mutation p.S528L 0.14 tolerated(0.06) possibly_damaging(0.588) TCGA-32-2616-01 7 35674840 35674840 C T HERPUD2 Silent p.T282T 0.22 TCGA-32-2616-01 7 37916530 37916530 C T NME8 Silent p.P305P 0.18 TCGA-32-2616-01 7 38424433 38424433 G A AMPH Nonsense_Mutation p.R692* 0.20 TCGA-32-2616-01 7 39491282 39491282 G A POU6F2 Missense_Mutation p.V462M 0.14 deleterious(0.01) unknown(0) TCGA-32-2616-01 7 42005905 42005905 C T GLI3 Silent p.T922T 0.11 TCGA-32-2616-01 7 42085128 42085128 C T GLI3 Silent p.A227A 0.18 TCGA-32-2616-01 7 43351403 43351403 G A HECW1 Silent p.A23A 0.23 TCGA-32-2616-01 7 43484795 43484795 C T HECW1 Missense_Mutation p.A675V 0.21 tolerated_low_confidence(0.12) benign(0.094) TCGA-32-2616-01 7 43484943 43484943 C T HECW1 Silent p.S724S 0.17 TCGA-32-2616-01 7 44153254 44153254 G A AEBP1 Silent p.A957A 0.21 TCGA-32-2616-01 7 44684945 44684945 G A OGDH Missense_Mutation p.R81H 0.19 deleterious(0.04) possibly_damaging(0.748) TCGA-32-2616-01 7 44805067 44805067 G A ZMIZ2 Missense_Mutation p.V711M 0.15 tolerated(1) benign(0.003) TCGA-32-2616-01 7 45006353 45006353 C T MYO1G Missense_Mutation p.A623T 0.22 tolerated(0.2) benign(0.013) TCGA-32-2616-01 7 45141999 45141999 C T TBRG4 Missense_Mutation p.R423Q 0.20 tolerated(1) benign(0.007) TCGA-32-2616-01 7 45143745 45143745 C T TBRG4 Missense_Mutation p.A340T 0.21 deleterious(0.04) probably_damaging(0.984) TCGA-32-2616-01 7 45688285 45688285 G A ADCY1 Missense_Mutation p.R346H 0.22 deleterious(0) probably_damaging(1) TCGA-32-2616-01 7 45956982 45956982 C T IGFBP3 Missense_Mutation p.V160I 0.21 tolerated(0.49) benign(0.031) TCGA-32-2616-01 7 47894601 47894601 G A PKD1L1 Missense_Mutation p.R1580W 0.15 tolerated(0.11) benign(0.059) TCGA-32-2616-01 7 47917119 47917119 C T PKD1L1 Missense_Mutation p.V1211I 0.21 tolerated(1) benign(0.007) TCGA-32-2616-01 7 47925521 47925521 G A PKD1L1 Missense_Mutation p.R990W 0.20 tolerated(0.11) benign(0.004) TCGA-32-2616-01 7 48335439 48335439 C T ABCA13 Missense_Mutation p.T3033M 0.16 benign(0.051) TCGA-32-2616-01 7 49842381 49842381 G A VWC2 Silent p.T257T 0.18 TCGA-32-2616-01 7 5347923 5347923 C T TNRC18 Silent p.S2907S 0.17 TCGA-32-2616-01 7 55493089 55493089 C T LANCL2 Missense_Mutation p.T384M 0.19 deleterious(0) probably_damaging(0.991) TCGA-32-2616-01 7 56062627 56062627 G A GBAS Missense_Mutation p.V220I 0.19 tolerated(0.07) possibly_damaging(0.451) TCGA-32-2616-01 7 5645025 5645025 C T FSCN1 Missense_Mutation p.R468C 0.23 deleterious(0.01) possibly_damaging(0.587) TCGA-32-2616-01 7 5662601 5662601 C T RNF216 Missense_Mutation p.V888M 0.14 deleterious(0) probably_damaging(0.983) TCGA-32-2616-01 7 6086642 6086642 C T EIF2AK1 Missense_Mutation p.G177E 0.23 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 7 6449849 6449849 C T DAGLB Missense_Mutation p.D578N 0.36 tolerated(0.38) benign(0.23) TCGA-32-2616-01 7 65419186 65419186 G A VKORC1L1 Missense_Mutation p.V144I 0.21 tolerated(0.61) benign(0.001) TCGA-32-2616-01 7 65441151 65441151 G T GUSB Missense_Mutation p.L255M 0.10 tolerated(0.14) benign(0.311) TCGA-32-2616-01 7 6639759 6639759 G A C7orf26 Missense_Mutation p.V294I 0.27 tolerated(0.25) benign(0.208) TCGA-32-2616-01 7 70886001 70886001 C T WBSCR17 Missense_Mutation p.S291L 0.20 deleterious(0.01) probably_damaging(0.992) TCGA-32-2616-01 7 71571249 71571249 C T CALN1 Missense_Mutation p.R92Q 0.16 tolerated(0.06) benign(0.031) TCGA-32-2616-01 7 73008258 73008258 C T MLXIPL Silent p.P832P 0.20 TCGA-32-2616-01 7 73151601 73151601 G A ABHD11 Missense_Mutation p.R195C 0.20 deleterious(0.03) probably_damaging(0.978) TCGA-32-2616-01 7 73657510 73657510 G A RFC2 Silent p.F167F 0.22 TCGA-32-2616-01 7 75401253 75401253 G A CCL26 Nonsense_Mutation p.R48* 0.22 TCGA-32-2616-01 7 7572456 7572456 C T COL28A1 Silent p.T17T 0.21 TCGA-32-2616-01 7 780504 780504 C T HEATR2 Missense_Mutation p.R277C 0.18 deleterious(0) probably_damaging(0.943) TCGA-32-2616-01 7 819601 819601 C T HEATR2 Missense_Mutation p.R751C 0.12 deleterious(0) probably_damaging(1) TCGA-32-2616-01 7 83610658 83610658 C T SEMA3A Missense_Mutation p.R544H 0.18 tolerated(0.06) probably_damaging(0.912) TCGA-32-2616-01 7 86415671 86415671 C T GRM3 Missense_Mutation p.A188V 0.16 deleterious(0) probably_damaging(0.978) TCGA-32-2616-01 7 87082269 87082269 C T ABCB4 Missense_Mutation p.R176Q 0.12 deleterious(0) probably_damaging(0.991) TCGA-32-2616-01 7 889562 889562 G A SUN1 Intron 0.22 TCGA-32-2616-01 7 93518426 93518426 G A TFPI2 Silent p.S127S 0.20 TCGA-32-2616-01 7 94057038 94057038 C T COL1A2 Missense_Mutation p.R1123C 0.25 unknown(0) TCGA-32-2616-01 7 94146881 94146881 C T CASD1 Missense_Mutation p.S48L 0.16 deleterious(0) benign(0.078) TCGA-32-2616-01 7 94897892 94897892 G A PPP1R9A Missense_Mutation p.R899H 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-32-2616-01 7 94928193 94928193 G A PON1 3'UTR 0.27 TCGA-32-2616-01 7 97821424 97821424 C T LMTK2 Silent p.S549S 0.24 TCGA-32-2616-01 7 98576434 98576434 C T TRRAP Silent p.Y2840Y 0.23 TCGA-32-2616-01 7 98630733 98630733 C T SMURF1 Missense_Mutation p.A701T 0.12 tolerated(0.06) benign(0.129) TCGA-32-2616-01 7 99129142 99129142 G A ZKSCAN5 Missense_Mutation p.R597H 0.22 deleterious(0) probably_damaging(1) TCGA-32-2616-01 7 99313528 99313528 C T CYP3A7 Missense_Mutation p.V175I 0.17 tolerated(1) benign(0.002) TCGA-32-2616-01 7 99355626 99355626 C T CYP3A4 3'UTR 0.15 TCGA-32-2616-01 7 99701087 99701087 C T AP4M1 Missense_Mutation p.T136M 0.21 deleterious(0.04) benign(0.073) TCGA-32-2616-01 7 99808659 99808659 C T STAG3 Silent p.D1088D 0.17 TCGA-32-2616-01 8 10177398 10177398 C T MSRA Missense_Mutation p.R148C 0.24 deleterious(0.01) probably_damaging(0.999) TCGA-32-2616-01 8 103300435 103300435 G A UBR5 Silent p.H1591H 0.43 TCGA-32-2616-01 8 106813564 106813564 C T ZFPM2 Silent p.S418S 0.33 TCGA-32-2616-01 8 106814983 106814983 C T ZFPM2 Silent p.D891D 0.39 TCGA-32-2616-01 8 113349036 113349036 A G CSMD3 Silent p.T2288T 0.05 TCGA-32-2616-01 8 11996040 11996040 G A USP17L2 Missense_Mutation p.A77V 0.22 tolerated(0.25) benign(0.014) TCGA-32-2616-01 8 124219785 124219785 C T FAM83A Missense_Mutation p.R388W 0.45 deleterious(0.04) benign(0.086) TCGA-32-2616-01 8 124453601 124453601 C T WDYHV1 Silent p.G188G 0.26 TCGA-32-2616-01 8 125094634 125094634 C T FER1L6 Silent p.I1442I 0.27 TCGA-32-2616-01 8 12943301 12943301 G A DLC1 3'UTR 0.44 TCGA-32-2616-01 8 134232843 134232843 C T WISP1 Silent p.C123C 0.32 TCGA-32-2616-01 8 134233052 134233052 G A WISP1 Missense_Mutation p.R193H 0.35 deleterious(0.04) benign(0.046) TCGA-32-2616-01 8 139833560 139833560 C T COL22A1 Missense_Mutation p.R355Q 0.41 unknown(0) TCGA-32-2616-01 8 143623556 143623556 G A BAI1 Missense_Mutation p.G1321S 0.35 tolerated(0.36) possibly_damaging(0.862) TCGA-32-2616-01 8 143996608 143996608 G T CYP11B2 Nonsense_Mutation p.S150* 0.33 TCGA-32-2616-01 8 144620838 144620838 G A ZC3H3 Silent p.S233S 0.41 TCGA-32-2616-01 8 144801001 144801001 C T MAPK15 Missense_Mutation p.R115C 0.55 tolerated(0.22) probably_damaging(1) TCGA-32-2616-01 8 144899233 144899233 C T PUF60 Silent p.T409T 0.35 TCGA-32-2616-01 8 144942306 144942306 G A EPPK1 Missense_Mutation p.R1706C 0.38 possibly_damaging(0.659) TCGA-32-2616-01 8 145101788 145101788 C T SPATC1 Silent p.D569D 0.46 TCGA-32-2616-01 8 145111550 145111550 C T OPLAH Silent p.A605A 0.28 TCGA-32-2616-01 8 145138650 145138650 C T GPAA1 Missense_Mutation p.R134W 0.24 deleterious(0) probably_damaging(1) TCGA-32-2616-01 8 145618765 145618765 G A CPSF1 Missense_Mutation p.R1396C 0.55 deleterious(0) probably_damaging(0.993) TCGA-32-2616-01 8 145622722 145622722 G A CPSF1 Missense_Mutation p.R789W 0.27 deleterious(0) probably_damaging(0.999) TCGA-32-2616-01 8 145625214 145625214 G A CPSF1 Missense_Mutation p.A359V 0.62 tolerated(0.22) benign(0.067) TCGA-32-2616-01 8 145641219 145641219 C T SLC39A4 Missense_Mutation p.R150Q 0.40 tolerated(1) benign(0.003) TCGA-32-2616-01 8 145661164 145661164 C T TONSL Missense_Mutation p.M884I 0.42 tolerated(0.31) benign(0) TCGA-32-2616-01 8 145737432 145737432 G A RECQL4 Silent p.C1085C 0.56 TCGA-32-2616-01 8 1497029 1497029 C T DLGAP2 Missense_Mutation p.P57L 0.50 deleterious(0.01) possibly_damaging(0.579) TCGA-32-2616-01 8 18457930 18457930 G A PSD3 Nonsense_Mutation p.R809* 0.43 TCGA-32-2616-01 8 19681456 19681456 C T INTS10 Missense_Mutation p.T246M 0.33 tolerated(0.06) possibly_damaging(0.809) TCGA-32-2616-01 8 20004868 20004868 G A SLC18A1 Silent p.I455I 0.31 TCGA-32-2616-01 8 22054259 22054260 - C BMP1 Frame_Shift_Ins p.N614Qfs*21 0.31 TCGA-32-2616-01 8 24811266 24811266 C T CTD-2168K21.2 5'Flank 0.31 TCGA-32-2616-01 8 26267896 26267896 C T BNIP3L Nonsense_Mutation p.R210* 0.17 TCGA-32-2616-01 8 27320982 27320982 C T CHRNA2 Silent p.P326P 0.46 TCGA-32-2616-01 8 27402057 27402057 C T EPHX2 3'UTR 0.34 TCGA-32-2616-01 8 28608423 28608423 G A EXTL3 3'UTR 0.44 TCGA-32-2616-01 8 3063042 3063042 C T CSMD1 Silent p.T1656T 0.52 TCGA-32-2616-01 8 3263696 3263696 G A CSMD1 Nonsense_Mutation p.R707* 0.37 TCGA-32-2616-01 8 3265576 3265576 G A CSMD1 Missense_Mutation p.A639V 0.23 benign(0.013) TCGA-32-2616-01 8 37635597 37635597 C T PROSC Missense_Mutation p.P268L 0.35 deleterious_low_confidence(0.02) benign(0.033) TCGA-32-2616-01 8 37702088 37702088 G A BRF2 Missense_Mutation p.R394C 0.30 deleterious(0) probably_damaging(1) TCGA-32-2616-01 8 37732314 37732314 A G RAB11FIP1 Silent p.A447A 0.33 TCGA-32-2616-01 8 38124904 38124904 C T PPAPDC1B Missense_Mutation p.R115H 0.28 deleterious(0) probably_damaging(1) TCGA-32-2616-01 8 38194954 38194954 G A WHSC1L1 Missense_Mutation p.T260M 0.25 tolerated(0.09) possibly_damaging(0.459) TCGA-32-2616-01 8 38280668 38280668 G A FGFR1 Intron 0.38 TCGA-32-2616-01 8 41552764 41552764 C T ANK1 Missense_Mutation p.V1057M 0.42 tolerated(0.09) benign(0.016) TCGA-32-2616-01 8 42294992 42294992 G A SLC20A2 Silent p.T346T 0.32 TCGA-32-2616-01 8 43025789 43025789 G A HGSNAT Missense_Mutation p.R232H 0.38 tolerated(0.27) benign(0.006) TCGA-32-2616-01 8 53568926 53568926 A T RB1CC1 Missense_Mutation p.L1155I 0.35 tolerated_low_confidence(0.11) benign(0.016) TCGA-32-2616-01 8 53853289 53853289 G A NPBWR1 Silent p.A274A 0.38 TCGA-32-2616-01 8 56737276 56737276 C T TGS1 3'UTR 0.49 TCGA-32-2616-01 8 59555561 59555561 T C NSMAF Missense_Mutation p.K75R 0.09 tolerated(0.53) benign(0.001) TCGA-32-2616-01 8 61192335 61192335 G A CA8 Missense_Mutation p.R69C 0.30 tolerated(0.09) possibly_damaging(0.782) TCGA-32-2616-01 8 6338339 6338339 G A MCPH1 Missense_Mutation p.R693H 0.05 deleterious(0) probably_damaging(0.996) TCGA-32-2616-01 8 6614961 6614961 G A AGPAT5 3'UTR 0.30 TCGA-32-2616-01 8 68956788 68956788 G A PREX2 Silent p.T302T 0.34 TCGA-32-2616-01 8 91929752 91929752 C T NECAB1 Silent p.F130F 0.26 TCGA-32-2616-01 8 92998376 92998376 C T RUNX1T1 Missense_Mutation p.V430I 0.35 tolerated(0.23) benign(0.012) TCGA-32-2616-01 9 100862340 100862340 G A TRIM14 Missense_Mutation p.T137M 0.42 tolerated(0.26) benign(0.118) TCGA-32-2616-01 9 100965580 100965580 G A TBC1D2 Missense_Mutation p.T754M 0.37 tolerated(0.2) benign(0.026) TCGA-32-2616-01 9 101133833 101133833 G A GABBR2 Silent p.T561T 0.41 TCGA-32-2616-01 9 101797637 101797637 C T COL15A1 Silent p.T742T 0.32 TCGA-32-2616-01 9 103109047 103109047 G A TEX10 Silent p.N274N 0.33 TCGA-32-2616-01 9 111617272 111617272 C T ACTL7B Silent p.P313P 0.08 TCGA-32-2616-01 9 112211098 112211098 C T PTPN3 Missense_Mutation p.E136K 0.29 tolerated(0.09) possibly_damaging(0.804) TCGA-32-2616-01 9 114199290 114199290 G A KIAA0368 Missense_Mutation p.P391L 0.35 deleterious(0.02) probably_damaging(0.948) TCGA-32-2616-01 9 116187312 116187312 G A C9orf43 Missense_Mutation p.R274Q 0.38 deleterious(0.04) benign(0.286) TCGA-32-2616-01 9 117666361 117666361 G A TNFSF8 Silent p.H185H 0.05 TCGA-32-2616-01 9 117825320 117825320 C T TNC Silent p.T1303T 0.29 TCGA-32-2616-01 9 117846502 117846502 G A TNC Missense_Mutation p.A706V 0.31 deleterious(0.04) probably_damaging(0.995) TCGA-32-2616-01 9 118950132 118950132 G A PAPPA Missense_Mutation p.R372H 0.42 tolerated(0.06) benign(0) TCGA-32-2616-01 9 124116908 124116908 C T STOM Missense_Mutation p.R70H 0.43 tolerated(0.14) benign(0.262) TCGA-32-2616-01 9 125437772 125437772 C T OR1L3 Missense_Mutation p.R122C 0.32 deleterious(0.01) benign(0.081) TCGA-32-2616-01 9 127074839 127074839 G A NEK6 Missense_Mutation p.E82K 0.33 tolerated(0.41) benign(0.187) TCGA-32-2616-01 9 130095384 130095384 C T GARNL3 Silent p.G251G 0.38 TCGA-32-2616-01 9 130236154 130236154 C T LRSAM1 Missense_Mutation p.R232W 0.32 deleterious(0.03) benign(0) TCGA-32-2616-01 9 131804609 131804609 G A FAM73B Silent p.T41T 0.35 TCGA-32-2616-01 9 133501803 133501803 G A FUBP3 Missense_Mutation p.R343H 0.06 tolerated(0.1) possibly_damaging(0.677) TCGA-32-2616-01 9 133901910 133901910 C T LAMC3 Silent p.N204N 0.47 TCGA-32-2616-01 9 134151520 134151520 G A FAM78A Missense_Mutation p.A16V 0.34 tolerated_low_confidence(0.27) benign(0.011) TCGA-32-2616-01 9 134165560 134165560 G A PPAPDC3 Missense_Mutation p.R59Q 0.48 tolerated(0.11) possibly_damaging(0.459) TCGA-32-2616-01 9 136029587 136029587 G A GBGT1 Missense_Mutation p.R141W 0.56 deleterious(0.02) benign(0.435) TCGA-32-2616-01 9 137323801 137323801 C T RXRA Missense_Mutation p.T365M 0.33 deleterious(0.02) probably_damaging(0.998) TCGA-32-2616-01 9 137693838 137693838 C T COL5A1 Silent p.G997G 0.37 TCGA-32-2616-01 9 138516139 138516139 G A GLT6D1 Missense_Mutation p.P212L 0.36 tolerated(0.16) benign(0.086) TCGA-32-2616-01 9 139748463 139748463 G A MAMDC4 Missense_Mutation p.R202Q 0.33 tolerated(0.63) possibly_damaging(0.802) TCGA-32-2616-01 9 140126203 140126203 G A SLC34A3 Missense_Mutation p.A17T 0.39 tolerated(1) benign(0.001) TCGA-32-2616-01 9 140201458 140201458 C T EXD3 Missense_Mutation p.A859T 0.37 deleterious(0.04) unknown(0) TCGA-32-2616-01 9 140356055 140356055 G A PNPLA7 Silent p.N1258N 0.30 TCGA-32-2616-01 9 140941473 140941473 G A CACNA1B Silent p.S1177S 0.25 TCGA-32-2616-01 9 14842398 14842398 C T FREM1 Missense_Mutation p.A552T 0.39 deleterious(0.02) benign(0.012) TCGA-32-2616-01 9 312114 312114 G A DOCK8 Missense_Mutation p.R230Q 0.30 deleterious(0.03) probably_damaging(0.998) TCGA-32-2616-01 9 33797895 33797895 C T PRSS3 Missense_Mutation p.A147V 0.05 tolerated(0.37) benign(0.278) TCGA-32-2616-01 9 34514433 34514433 C T DNAI1 Silent p.D537D 0.29 TCGA-32-2616-01 9 35689161 35689161 G A TPM2 Silent p.A74A 0.04 TCGA-32-2616-01 9 35724073 35724073 G A TLN1 Nonsense_Mutation p.R220* 0.32 TCGA-32-2616-01 9 35958057 35958057 G A OR2S2 Silent p.F13F 0.30 TCGA-32-2616-01 9 37763649 37763649 C T TRMT10B Missense_Mutation p.R107C 0.31 deleterious(0.03) benign(0.113) TCGA-32-2616-01 9 4118572 4118572 C T GLIS3 Silent p.A302A 0.39 TCGA-32-2616-01 9 4834265 4834265 C T RCL1 Missense_Mutation p.A195V 0.06 tolerated(0.13) benign(0.27) TCGA-32-2616-01 9 5072541 5072541 G A JAK2 Missense_Mutation p.R564Q 0.26 tolerated(0.07) probably_damaging(0.999) TCGA-32-2616-01 9 5361879 5361879 G A PLGRKT Nonsense_Mutation p.Q31* 0.07 TCGA-32-2616-01 9 5922868 5922868 G A KIAA2026 Missense_Mutation p.P1043L 0.45 tolerated(0.38) benign(0.001) TCGA-32-2616-01 9 6498129 6498129 C T UHRF2 Missense_Mutation p.R627W 0.44 deleterious(0) probably_damaging(0.991) TCGA-32-2616-01 9 6554769 6554769 G A GLDC Missense_Mutation p.R739C 0.53 deleterious(0.01) probably_damaging(0.998) TCGA-32-2616-01 9 710965 710965 C T KANK1 Missense_Mutation p.R67W 0.42 deleterious(0.01) possibly_damaging(0.893) TCGA-32-2616-01 9 73002916 73002916 G A KLF9 Missense_Mutation p.R171W 0.56 deleterious(0) probably_damaging(1) TCGA-32-2616-01 9 78710934 78710934 C T PCSK5 Silent p.S341S 0.40 TCGA-32-2616-01 9 86279960 86279960 G A UBQLN1 Missense_Mutation p.P478L 0.38 deleterious(0) probably_damaging(0.992) TCGA-32-2616-01 9 88880937 88880937 G A ISCA1 3'UTR 0.43 TCGA-32-2616-01 9 91972948 91972948 C T SECISBP2 Missense_Mutation p.A768V 0.43 deleterious(0.04) benign(0.051) TCGA-32-2616-01 9 94486621 94486621 C T ROR2 Missense_Mutation p.A719T 0.41 tolerated(0.7) benign(0.006) TCGA-32-2616-01 9 96261128 96261128 G A FAM120A Silent p.A330A 0.34 TCGA-32-2616-01 9 98215818 98215818 C T PTCH1 Missense_Mutation p.V1131M 0.36 deleterious(0.04) possibly_damaging(0.582) TCGA-32-2616-01 X 100505457 100505457 G A DRP2 Missense_Mutation p.R529H 0.35 deleterious(0) probably_damaging(0.923) TCGA-32-2616-01 X 10176152 10176152 C T CLCN4 Missense_Mutation p.T304M 0.40 deleterious(0.01) probably_damaging(0.911) TCGA-32-2616-01 X 102755508 102755508 G A RAB40A Silent p.D59D 0.34 TCGA-32-2616-01 X 102931886 102931886 G T MORF4L2 Missense_Mutation p.P24T 0.35 tolerated(0.27) benign(0.006) TCGA-32-2616-01 X 103495261 103495261 C T ESX1 Missense_Mutation p.R290H 0.53 tolerated_low_confidence(0.06) unknown(0) TCGA-32-2616-01 X 106845719 106845719 G A FRMPD3 Missense_Mutation p.E1517K 0.41 tolerated(0.05) probably_damaging(0.967) TCGA-32-2616-01 X 108911433 108911433 C T ACSL4 Silent p.P445P 0.33 TCGA-32-2616-01 X 118676507 118676507 G A CXorf56 Silent p.T158T 0.28 TCGA-32-2616-01 X 118893454 118893454 C T SOWAHD Missense_Mutation p.T275M 0.41 tolerated(0.12) benign(0.446) TCGA-32-2616-01 X 123787546 123787546 C T TENM1 Missense_Mutation p.R419H 0.31 deleterious(0.01) possibly_damaging(0.89) TCGA-32-2616-01 X 128602861 128602861 G A SMARCA1 Nonsense_Mutation p.R863* 0.31 TCGA-32-2616-01 X 129349302 129349302 C T ZNF280C Missense_Mutation p.R615H 0.34 tolerated(0.49) benign(0.001) TCGA-32-2616-01 X 133915875 133915875 G A FAM122B Missense_Mutation p.A211V 0.06 tolerated(0.08) benign(0.145) TCGA-32-2616-01 X 135572321 135572321 G A BRS3 Missense_Mutation p.R155Q 0.46 tolerated(0.19) probably_damaging(0.92) TCGA-32-2616-01 X 151123517 151123517 G A GABRE Missense_Mutation p.R393C 0.38 deleterious(0.01) possibly_damaging(0.761) TCGA-32-2616-01 X 152770218 152770218 C T BGN Silent p.G43G 0.28 TCGA-32-2616-01 X 152818528 152818528 G A ATP2B3 Missense_Mutation p.R620Q 0.36 tolerated(0.26) benign(0.313) TCGA-32-2616-01 X 152825328 152825328 C T ATP2B3 Missense_Mutation p.R923C 0.38 deleterious(0) probably_damaging(0.932) TCGA-32-2616-01 X 153008971 153008971 G A ABCD1 Missense_Mutation p.D674N 0.19 deleterious(0.01) possibly_damaging(0.763) TCGA-32-2616-01 X 153297769 153297769 C T MECP2 Missense_Mutation p.R101H 0.36 deleterious(0) probably_damaging(0.995) TCGA-32-2616-01 X 153578538 153578538 G A FLNA Silent p.G2398G 0.33 TCGA-32-2616-01 X 154290069 154290070 - A CMC4 3'UTR 0.24 TCGA-32-2616-01 X 15782840 15782840 C T CA5B Silent p.H94H 0.35 TCGA-32-2616-01 X 17095437 17095437 G A REPS2 Missense_Mutation p.E475K 0.34 deleterious(0) probably_damaging(0.978) TCGA-32-2616-01 X 17819942 17819942 G A RAI2 Silent p.A63A 0.36 TCGA-32-2616-01 X 20060723 20060723 G A MAP7D2 Nonsense_Mutation p.R302* 0.44 TCGA-32-2616-01 X 24024756 24024756 C T KLHL15 Missense_Mutation p.A19T 0.33 tolerated(0.27) benign(0.255) TCGA-32-2616-01 X 24580240 24580240 C T PCYT1B 3'UTR 0.34 TCGA-32-2616-01 X 26212120 26212120 C T MAGEB6 Missense_Mutation p.R53C 0.24 deleterious(0.04) possibly_damaging(0.871) TCGA-32-2616-01 X 31090151 31090151 C T FTHL17 5'UTR 0.28 TCGA-32-2616-01 X 34962556 34962556 G A FAM47B Silent p.P536P 0.35 TCGA-32-2616-01 X 39931613 39931613 G A BCOR Missense_Mutation p.R996W 0.40 deleterious(0) probably_damaging(0.998) TCGA-32-2616-01 X 41333517 41333517 C T NYX Missense_Mutation p.R271C 0.38 tolerated(0.22) possibly_damaging(0.901) TCGA-32-2616-01 X 44383420 44383420 C T FUNDC1 3'UTR 0.34 TCGA-32-2616-01 X 44918327 44918327 G A KDM6A Missense_Mutation p.A318T 0.27 deleterious(0) probably_damaging(1) TCGA-32-2616-01 X 46712963 46712963 G A RP2 Missense_Mutation p.R52H 0.34 deleterious(0) possibly_damaging(0.804) TCGA-32-2616-01 X 47006885 47006885 A G RBM10 Missense_Mutation p.E2G 0.34 tolerated(0.42) unknown(0) TCGA-32-2616-01 X 48374454 48374454 C T PORCN Missense_Mutation p.R365W 0.38 deleterious(0) probably_damaging(0.996) TCGA-32-2616-01 X 48418056 48418056 C T TBC1D25 Missense_Mutation p.R254W 0.31 deleterious(0) probably_damaging(1) TCGA-32-2616-01 X 48825597 48825597 G A KCND1 Missense_Mutation p.A361V 0.08 deleterious(0.01) benign(0.316) TCGA-32-2616-01 X 48831674 48831674 C T GRIPAP1 Missense_Mutation p.V776I 0.31 possibly_damaging(0.835) TCGA-32-2616-01 X 50167248 50167248 C T DGKK Intron 0.25 TCGA-32-2616-01 X 53114165 53114165 C T TSPYL2 Missense_Mutation p.R343C 0.05 deleterious(0.01) probably_damaging(0.991) TCGA-32-2616-01 X 55784772 55784772 G A RRAGB Missense_Mutation p.R374H 0.21 tolerated_low_confidence(0.11) probably_damaging(0.996) TCGA-32-2616-01 X 62570231 62570231 G A SPIN4 Silent p.Y156Y 0.03 TCGA-32-2616-01 X 62570720 62570720 T C SPIN4 5'UTR 0.37 TCGA-32-2616-01 X 67293038 67293038 C T OPHN1 Missense_Mutation p.R597Q 0.09 deleterious(0.01) possibly_damaging(0.657) TCGA-32-2616-01 X 7023770 7023770 C T HDHD1 Silent p.A80A 0.26 TCGA-32-2616-01 X 70444255 70444255 C T GJB1 Missense_Mutation p.S233L 0.33 tolerated(0.13) possibly_damaging(0.885) TCGA-32-2616-01 X 70781708 70781708 C T OGT Silent p.G645G 0.43 TCGA-32-2616-01 X 71349754 71349754 C T RGAG4 Missense_Mutation p.R546H 0.24 tolerated_low_confidence(0.19) unknown(0) TCGA-32-2616-01 X 76890149 76890150 - T ATRX Frame_Shift_Ins p.T1582Nfs*19 0.40 TCGA-32-2632-01 10 89692901 89692901 G T PTEN Nonsense_Mutation p.G129* 0.05 TCGA-32-2632-01 11 123676770 123676770 C T OR6M1 Missense_Mutation p.M96I 0.30 tolerated(1) benign(0) TCGA-32-2632-01 11 433453 433453 G A ANO9 Missense_Mutation p.R71W 0.15 deleterious(0) possibly_damaging(0.517) TCGA-32-2632-01 11 43464880 43464880 G A TTC17 Missense_Mutation p.V753M 0.29 tolerated(0.13) possibly_damaging(0.793) TCGA-32-2632-01 11 48285739 48285739 G A OR4X1 Silent p.E109E 0.39 TCGA-32-2632-01 11 67413173 67413173 C T ACY3 Missense_Mutation p.R141H 0.34 tolerated(1) benign(0.002) TCGA-32-2632-01 11 73102204 73102204 G C RELT Missense_Mutation p.W101C 0.35 tolerated(0.12) benign(0.235) TCGA-32-2632-01 12 41333137 41333137 C T CNTN1 Missense_Mutation p.A410V 0.05 tolerated(0.19) benign(0.032) TCGA-32-2632-01 12 72771778 72771778 C T TRHDE Nonsense_Mutation p.R353* 0.27 TCGA-32-2632-01 13 100425234 100425234 C G CLYBL Missense_Mutation p.D73E 0.11 tolerated(0.11) possibly_damaging(0.533) TCGA-32-2632-01 13 113485796 113485796 C T ATP11A Silent p.N443N 0.27 TCGA-32-2632-01 13 48941711 48941711 A - RB1 Frame_Shift_Del p.T342Lfs*7 0.26 TCGA-32-2632-01 14 104481128 104481128 C T TDRD9 Nonsense_Mutation p.R725* 0.31 TCGA-32-2632-01 14 23883029 23883029 G A MYH7 Missense_Mutation p.A1910V 0.23 deleterious(0.01) probably_damaging(0.986) TCGA-32-2632-01 14 57937988 57937988 A T C14orf105 3'UTR 0.44 TCGA-32-2632-01 14 74992813 74992813 G A LTBP2 Missense_Mutation p.T798M 0.25 tolerated(0.06) benign(0.028) TCGA-32-2632-01 14 79181464 79181464 G C NRXN3 Missense_Mutation p.G303R 0.25 deleterious(0) probably_damaging(0.989) TCGA-32-2632-01 15 23931758 23931758 G A NDN Missense_Mutation p.R203C 0.27 deleterious(0.01) benign(0.059) TCGA-32-2632-01 15 58458977 58458977 T A AQP9 Missense_Mutation p.Y73N 0.16 deleterious(0) probably_damaging(0.999) TCGA-32-2632-01 15 68119442 68119442 G T SKOR1 Intron 0.21 TCGA-32-2632-01 16 69404336 69404336 G A TERF2 Intron 0.06 TCGA-32-2632-01 16 70866858 70866858 C T HYDIN Missense_Mutation p.V4598M 0.29 probably_damaging(0.934) TCGA-32-2632-01 16 90128375 90128375 C T PRDM7 Missense_Mutation p.R279Q 0.05 tolerated(1) benign(0.002) TCGA-32-2632-01 16 9943739 9943739 G A GRIN2A Missense_Mutation p.P401L 0.35 tolerated(0.44) benign(0.006) TCGA-32-2632-01 17 34311432 34311432 G A CCL14 Missense_Mutation p.R62C 0.28 deleterious(0.01) probably_damaging(0.939) TCGA-32-2632-01 17 39597030 39597030 G A KRT38 Silent p.N48N 0.41 TCGA-32-2632-01 17 67041451 67041451 C T ABCA9 Missense_Mutation p.E111K 0.13 tolerated(0.12) benign(0.192) TCGA-32-2632-01 18 21735681 21735681 A T CABYR Missense_Mutation p.E72D 0.38 tolerated(0.06) probably_damaging(0.972) TCGA-32-2632-01 18 29784271 29784271 G A MEP1B Silent p.S165S 0.50 TCGA-32-2632-01 18 60017106 60017106 G A TNFRSF11A Silent p.P73P 0.29 TCGA-32-2632-01 19 10131987 10131987 C T RDH8 Missense_Mutation p.A218V 0.35 tolerated(0.21) benign(0.355) TCGA-32-2632-01 19 1080969 1080969 C T HMHA1 Missense_Mutation p.A715V 0.30 deleterious(0) probably_damaging(0.972) TCGA-32-2632-01 19 11546816 11546816 G - PRKCSH Intron 0.31 TCGA-32-2632-01 19 15651449 15651449 G A CYP4F22 Missense_Mutation p.R287H 0.35 tolerated(0.15) benign(0.001) TCGA-32-2632-01 19 17452117 17452117 G A GTPBP3 Silent p.K445K 0.28 TCGA-32-2632-01 19 18468321 18468321 C T PGPEP1 Silent p.D111D 0.06 TCGA-32-2632-01 19 35250777 35250777 G T ZNF599 Missense_Mutation p.P310H 0.29 deleterious(0) probably_damaging(1) TCGA-32-2632-01 19 46914658 46914658 C T CCDC8 Silent p.R470R 0.36 TCGA-32-2632-01 19 55147969 55147969 C A LILRB1 Missense_Mutation p.Q560K 0.12 deleterious(0) benign(0.257) TCGA-32-2632-01 19 55451000 55451000 C T NLRP7 Missense_Mutation p.R396H 0.33 tolerated(0.27) benign(0.009) TCGA-32-2632-01 19 8576334 8576334 C A ZNF414 Intron 0.44 TCGA-32-2632-01 1 120464949 120464949 G C NOTCH2 Missense_Mutation p.S1708C 0.27 tolerated(0.18) possibly_damaging(0.471) TCGA-32-2632-01 1 152278815 152278815 G A FLG Silent p.D2849D 0.15 TCGA-32-2632-01 1 152280892 152280892 G A FLG Missense_Mutation p.S2157L 0.36 benign(0.32) TCGA-32-2632-01 1 158614180 158614180 G C SPTA1 Missense_Mutation p.Q1401E 0.24 tolerated(0.22) benign(0.122) TCGA-32-2632-01 1 169525893 169525893 G A F5 Missense_Mutation p.H315Y 0.07 tolerated(0.05) probably_damaging(0.916) TCGA-32-2632-01 1 183849845 183849845 A C RGL1 Missense_Mutation p.Y209S 0.48 deleterious(0) possibly_damaging(0.657) TCGA-32-2632-01 1 183849848 183849848 T A RGL1 Missense_Mutation p.L210H 0.47 deleterious(0) probably_damaging(0.997) TCGA-32-2632-01 1 197112574 197112574 A G ASPM Missense_Mutation p.S270P 0.42 tolerated(0.18) benign(0.127) TCGA-32-2632-01 1 94953473 94953473 T C ABCD3 Missense_Mutation p.L364P 0.09 deleterious(0) probably_damaging(0.992) TCGA-32-2632-01 20 10018910 10018910 A G ANKEF1 5'UTR 0.28 TCGA-32-2632-01 20 34526877 34526877 G A PHF20 Silent p.Q853Q 0.23 TCGA-32-2632-01 20 43836560 43836560 C T SEMG1 Missense_Mutation p.R208C 0.35 deleterious(0.02) probably_damaging(0.959) TCGA-32-2632-01 21 28217207 28217207 G T ADAMTS1 Silent p.R23R 0.40 TCGA-32-2632-01 21 30359239 30359239 C T LTN1 Missense_Mutation p.R66Q 0.11 deleterious(0.02) probably_damaging(0.999) TCGA-32-2632-01 21 45550662 45550662 G A PWP2 3'UTR 0.35 TCGA-32-2632-01 22 43933388 43933388 G A EFCAB6 Missense_Mutation p.P1306L 0.31 tolerated(0.06) benign(0.038) TCGA-32-2632-01 22 44287047 44287047 G T PNPLA5 Missense_Mutation p.D107E 0.23 deleterious(0) probably_damaging(0.929) TCGA-32-2632-01 2 108614387 108614387 T A SLC5A7 Missense_Mutation p.L181H 0.40 deleterious(0) probably_damaging(0.989) TCGA-32-2632-01 2 125530385 125530385 A G CNTNAP5 Missense_Mutation p.E847G 0.22 deleterious(0.03) probably_damaging(0.952) TCGA-32-2632-01 2 167273364 167273364 G A SCN7A Silent p.D1089D 0.45 TCGA-32-2632-01 2 179453519 179453519 T C TTN Missense_Mutation p.E20978G 0.45 TCGA-32-2632-01 2 179522849 179522849 T A TTN Missense_Mutation p.I12583F 0.25 TCGA-32-2632-01 2 37599531 37599531 G A QPCT Missense_Mutation p.D286N 0.25 tolerated(0.57) benign(0.004) TCGA-32-2632-01 2 90212089 90212089 G T IGKV3D-11 Missense_Mutation p.G61C 0.16 deleterious(0) probably_damaging(0.997) TCGA-32-2632-01 3 100002647 100002648 - A TBC1D23 Frame_Shift_Ins p.I157Nfs*23 0.26 TCGA-32-2632-01 3 108279495 108279495 C T KIAA1524 Splice_Site p.X609_splice 0.29 TCGA-32-2632-01 3 130174429 130174429 A T COL6A5 Missense_Mutation p.S2237C 0.23 deleterious(0) possibly_damaging(0.789) TCGA-32-2632-01 3 138762829 138762829 G A PRR23C Missense_Mutation p.R212C 0.33 tolerated(0.18) benign(0.005) TCGA-32-2632-01 3 156763371 156763371 C T LEKR1 Silent p.R637R 0.32 TCGA-32-2632-01 3 50324238 50324238 C T LSMEM2 Silent p.L102L 0.33 TCGA-32-2632-01 3 52540843 52540843 G A STAB1 Missense_Mutation p.E656K 0.34 tolerated(0.28) benign(0.063) TCGA-32-2632-01 3 58856003 58856003 G A C3orf67 Missense_Mutation p.R125W 0.12 deleterious(0.02) benign(0.394) TCGA-32-2632-01 4 104044141 104044141 T C CENPE Missense_Mutation p.K2344E 0.31 benign(0.004) TCGA-32-2632-01 4 184431464 184431464 G A ING2 Missense_Mutation p.E68K 0.32 deleterious(0.03) probably_damaging(0.995) TCGA-32-2632-01 4 8472818 8472818 A G TRMT44 Silent p.L645L 0.33 TCGA-32-2632-01 4 8588808 8588808 C T GPR78 Silent p.T270T 0.07 TCGA-32-2632-01 5 1244741 1244741 G A SLC6A18 Silent p.A505A 0.26 TCGA-32-2632-01 5 130940379 130940379 T A RAPGEF6 Missense_Mutation p.N26I 0.12 deleterious(0.02) possibly_damaging(0.786) TCGA-32-2632-01 5 147796556 147796556 G C FBXO38 Splice_Site p.X470_splice 0.11 TCGA-32-2632-01 5 147796638 147796638 G C FBXO38 Missense_Mutation p.D497H 0.09 deleterious(0.01) probably_damaging(0.998) TCGA-32-2632-01 5 156890242 156890242 C G NIPAL4 Missense_Mutation p.L122V 0.26 tolerated(0.07) benign(0.433) TCGA-32-2632-01 5 161324318 161324318 C T GABRA1 Nonsense_Mutation p.R421* 0.38 TCGA-32-2632-01 5 17275800 17275800 G A BASP1 Missense_Mutation p.A159T 0.58 tolerated(0.15) unknown(0) TCGA-32-2632-01 5 54409992 54409992 A G CDC20B 3'UTR 0.43 TCGA-32-2632-01 5 55083676 55083676 G A DDX4 Silent p.A340A 0.26 TCGA-32-2632-01 5 94749817 94749817 T A FAM81B Missense_Mutation p.S154T 0.29 tolerated(0.5) benign(0.161) TCGA-32-2632-01 6 100395726 100395726 C A MCHR2 Missense_Mutation p.G102W 0.28 deleterious(0) probably_damaging(1) TCGA-32-2632-01 6 114265495 114265495 G C HDAC2 Missense_Mutation p.H391D 0.42 tolerated(0.32) benign(0) TCGA-32-2632-01 6 125231344 125231344 C A RP11-510H23.1 RNA 0.42 TCGA-32-2632-01 6 136682257 136682257 C T MAP7 Silent p.E551E 0.12 TCGA-32-2632-01 6 152420160 152420162 CAC - ESR1 3'UTR 0.26 TCGA-32-2632-01 7 100609886 100609886 C T MUC3A Silent p.D842D 0.11 TCGA-32-2632-01 7 106508826 106508826 G A PIK3CG Missense_Mutation p.V274I 0.04 deleterious(0.03) possibly_damaging(0.573) TCGA-32-2632-01 7 106509352 106509352 C T PIK3CG Missense_Mutation p.S449F 0.15 deleterious(0.04) benign(0.044) TCGA-32-2632-01 7 127222169 127222169 G C GCC1 Missense_Mutation p.L743V 0.12 deleterious(0.01) probably_damaging(0.983) TCGA-32-2632-01 7 141736628 141736628 G T MGAM Missense_Mutation p.Q694H 0.23 deleterious(0) probably_damaging(0.999) TCGA-32-2632-01 7 144015394 144015394 C A OR2A1 Nonsense_Mutation p.Y59* 0.13 TCGA-32-2632-01 7 146825878 146825878 G A CNTNAP2 Missense_Mutation p.V345I 0.20 tolerated(0.34) benign(0.008) TCGA-32-2632-01 7 149517991 149517991 G A SSPO RNA 0.19 TCGA-32-2632-01 7 20744386 20744386 G A ABCB5 Missense_Mutation p.G793S 0.22 deleterious(0.03) benign(0.039) TCGA-32-2632-01 7 29539600 29539600 A C CHN2 Missense_Mutation p.H286P 0.25 deleterious(0) probably_damaging(0.986) TCGA-32-2632-01 7 31682400 31682400 G A CCDC129 Silent p.S498S 0.24 TCGA-32-2632-01 7 4820908 4820908 C T AP5Z1 Silent p.L48L 0.22 TCGA-32-2632-01 7 55210075 55210075 T G EGFR Missense_Mutation p.L62R 0.96 deleterious(0.01) probably_damaging(0.962) TCGA-32-2632-01 7 65228310 65228310 G A SNORA15 3'Flank 0.13 TCGA-32-2632-01 7 71275350 71275350 G A CALN1 Missense_Mutation p.S210L 0.15 deleterious(0.04) benign(0.241) TCGA-32-2632-01 7 72850255 72850255 C T FZD9 3'UTR 0.22 TCGA-32-2632-01 8 105361318 105361318 C T DCSTAMP Missense_Mutation p.H180Y 0.35 tolerated(0.14) benign(0.162) TCGA-32-2632-01 8 25159899 25159899 G A DOCK5 Missense_Mutation p.R302H 0.53 deleterious(0) possibly_damaging(0.87) TCGA-32-2632-01 8 25189802 25189802 T A DOCK5 Missense_Mutation p.S647T 0.33 tolerated(0.37) benign(0.001) TCGA-32-2632-01 8 25265580 25265580 C T DOCK5 Silent p.S1725S 0.19 TCGA-32-2632-01 8 27308400 27308400 G A PTK2B Silent p.E825E 0.22 TCGA-32-2632-01 8 39111964 39111964 C T ADAM32 Missense_Mutation p.S645L 0.15 tolerated(0.67) benign(0.09) TCGA-32-2632-01 8 67705876 67705876 C A SGK3 5'UTR 0.25 TCGA-32-2632-01 8 75227467 75227467 C T JPH1 Silent p.T256T 0.38 TCGA-32-2632-01 9 134016058 134016058 C T NUP214 Nonsense_Mutation p.R419* 0.41 TCGA-32-2632-01 9 33442227 33442227 C T AQP3 Intron 0.43 TCGA-32-2632-01 9 39176040 39176040 C T CNTNAP3 Missense_Mutation p.R326H 0.08 tolerated(0.39) benign(0.004) TCGA-32-2632-01 9 84530455 84530455 G A SPATA31D5P RNA 0.33 TCGA-32-2632-01 X 102004542 102004543 - A BHLHB9 Frame_Shift_Ins p.N209Kfs*2 0.69 TCGA-32-2632-01 X 105011591 105011591 C A IL1RAPL2 Missense_Mutation p.H666Q 0.72 tolerated_low_confidence(0.05) benign(0.374) TCGA-32-2632-01 X 130217696 130217696 G A ARHGAP36 Intron 0.70 TCGA-32-2632-01 X 32486813 32486813 A G DMD Silent p.S988S 0.10 TCGA-32-2634-01 10 104158521 104158521 G T NFKB2 Silent p.R339R 0.67 TCGA-32-2634-01 10 89692835 89692835 G T PTEN Missense_Mutation p.D107Y 0.66 deleterious(0) probably_damaging(0.979) TCGA-32-2634-01 11 108383232 108383232 C - EXPH5 Frame_Shift_Del p.S1001Tfs*40 0.31 TCGA-32-2634-01 11 111590592 111590592 G A SIK2 Missense_Mutation p.E454K 0.41 deleterious(0) probably_damaging(0.997) TCGA-32-2634-01 11 1158988 1158988 T C MUC5AC Missense_Mutation p.V389A 0.23 deleterious(0.01) probably_damaging(0.957) TCGA-32-2634-01 11 5020755 5020755 T C OR51L1 Silent p.C181C 0.35 TCGA-32-2634-01 11 59225156 59225156 G A OR4D6 Silent p.T241T 0.40 TCGA-32-2634-01 11 59271382 59271382 A T OR4D11 Missense_Mutation p.I112F 0.40 deleterious(0) benign(0.439) TCGA-32-2634-01 11 59271391 59271391 C G OR4D11 Missense_Mutation p.L115V 0.41 deleterious(0) probably_damaging(0.998) TCGA-32-2634-01 11 74414523 74414523 G A CHRDL2 Missense_Mutation p.T258M 0.56 deleterious(0.01) probably_damaging(1) TCGA-32-2634-01 12 104461817 104461817 T C HCFC2 Silent p.Y135Y 0.43 TCGA-32-2634-01 12 5672695 5672695 T A ANO2 Missense_Mutation p.I923F 0.44 deleterious(0) probably_damaging(0.998) TCGA-32-2634-01 12 6436676 6436676 C T PLEKHG6 Missense_Mutation p.R643C 0.47 deleterious_low_confidence(0) probably_damaging(1) TCGA-32-2634-01 12 8051609 8051609 C T NANOGP1 RNA 0.25 TCGA-32-2634-01 13 49039230 49039230 C T RB1 Nonsense_Mutation p.Q770* 0.82 TCGA-32-2634-01 13 50589726 50589726 C T KCNRG Missense_Mutation p.R33C 0.80 tolerated(0.07) benign(0.004) TCGA-32-2634-01 14 24661549 24661549 C T TM9SF1 Missense_Mutation p.M327I 0.25 deleterious(0.03) benign(0.102) TCGA-32-2634-01 14 95033524 95033524 T A SERPINA4 Silent p.I289I 0.33 TCGA-32-2634-01 15 43817784 43817784 C T MAP1A Silent p.D1371D 0.40 TCGA-32-2634-01 15 59323149 59323149 T C RNF111 Missense_Mutation p.I43T 0.46 tolerated_low_confidence(0.05) benign(0.246) TCGA-32-2634-01 17 34136531 34136531 G A TAF15 5'UTR 0.11 TCGA-32-2634-01 17 34951507 34951507 G A DHRS11 Missense_Mutation p.R85H 0.88 deleterious(0.01) benign(0.015) TCGA-32-2634-01 17 7577520 7577520 A C TP53 Missense_Mutation p.I254S 0.79 deleterious(0) probably_damaging(1) TCGA-32-2634-01 18 21511114 21511114 C T LAMA3 Missense_Mutation p.T2842M 0.76 probably_damaging(0.932) TCGA-32-2634-01 18 28604418 28604418 A T DSC3 Missense_Mutation p.D224E 0.80 tolerated(1) probably_damaging(0.999) TCGA-32-2634-01 19 13355996 13355996 C T CACNA1A Silent p.G1650G 0.32 TCGA-32-2634-01 19 3151776 3151776 G A GNA15 Missense_Mutation p.R186H 0.44 deleterious(0) probably_damaging(0.998) TCGA-32-2634-01 19 36051416 36051416 G A ATP4A Silent p.A212A 0.48 TCGA-32-2634-01 19 4207777 4207777 G A ANKRD24 Splice_Site p.X215_splice 0.79 TCGA-32-2634-01 19 55593671 55593671 C T EPS8L1 Missense_Mutation p.P340L 0.57 deleterious(0) probably_damaging(1) TCGA-32-2634-01 19 57066095 57066095 T G ZFP28 Missense_Mutation p.C647W 0.43 deleterious(0.01) probably_damaging(1) TCGA-32-2634-01 1 228582635 228582635 G A TRIM11 Missense_Mutation p.A393V 0.45 tolerated(0.09) benign(0.297) TCGA-32-2634-01 1 23381588 23381589 CA - KDM1A Frame_Shift_Del p.H273Qfs*15 0.46 TCGA-32-2634-01 1 47364597 47364597 G A CYP4Z2P RNA 0.41 TCGA-32-2634-01 1 54354659 54354659 T C YIPF1 Intron 0.39 TCGA-32-2634-01 20 1424444 1424444 G A NSFL1C Silent p.L357L 0.05 TCGA-32-2634-01 2 137814764 137814764 C T THSD7B Missense_Mutation p.S305L 0.48 tolerated(0.66) probably_damaging(0.964) TCGA-32-2634-01 2 192546717 192546717 G A NABP1 Silent p.R92R 0.40 TCGA-32-2634-01 2 210881273 210881273 G A RPE Missense_Mutation p.A129T 0.14 tolerated(0.4) benign(0.006) TCGA-32-2634-01 3 52521429 52521440 GAGGAGGAGGAA - NISCH In_Frame_Del p.E644_E647del 0.43 TCGA-32-2634-01 4 102816534 102816534 T C BANK1 Missense_Mutation p.S326P 0.06 tolerated(0.32) benign(0.01) TCGA-32-2634-01 4 146059760 146059760 G A OTUD4 Missense_Mutation p.P658S 0.36 deleterious(0) probably_damaging(0.999) TCGA-32-2634-01 4 55561826 55561826 T A KIT Missense_Mutation p.D72E 0.41 tolerated(0.71) benign(0.001) TCGA-32-2634-01 4 6598876 6598876 G A MAN2B2 Missense_Mutation p.R365H 0.44 tolerated(0.09) possibly_damaging(0.458) TCGA-32-2634-01 5 121187841 121187841 C T FTMT Silent p.P61P 0.38 TCGA-32-2634-01 5 13841119 13841119 T C DNAH5 Missense_Mutation p.T1869A 0.46 benign(0.217) TCGA-32-2634-01 5 175717776 175717776 C T SIMC1 Intron 0.34 TCGA-32-2634-01 5 179467635 179467635 A T RNF130 Missense_Mutation p.L87Q 0.27 tolerated(0.74) benign(0.021) TCGA-32-2634-01 5 23522425 23522425 A G PRDM9 Missense_Mutation p.K174R 0.41 tolerated(0.09) possibly_damaging(0.618) TCGA-32-2634-01 5 67591121 67591121 C T PIK3R1 Nonsense_Mutation p.Q572* 0.38 TCGA-32-2634-01 6 163235309 163235309 G A PACRG Nonsense_Mutation p.W96* 0.46 TCGA-32-2634-01 7 22769182 22769182 A T IL6 Missense_Mutation p.Y125F 0.45 tolerated(0.05) possibly_damaging(0.831) TCGA-32-2634-01 7 30496383 30496383 G A NOD1 Missense_Mutation p.A52V 0.42 tolerated(0.27) benign(0.01) TCGA-32-2634-01 7 48318026 48318026 C G ABCA13 Missense_Mutation p.A2412G 0.49 benign(0.37) TCGA-32-2634-01 7 66240358 66240358 T C KCTD7 Silent p.S108S 0.38 TCGA-32-2634-01 7 80430136 80430136 A T SEMA3C Missense_Mutation p.V308E 0.13 deleterious(0) possibly_damaging(0.799) TCGA-32-2634-01 7 81591256 81591256 C T CACNA2D1 Missense_Mutation p.D974N 0.36 tolerated(0.62) benign(0.014) TCGA-32-2634-01 9 137801580 137801580 C T FCN1 3'UTR 0.47 TCGA-32-2634-01 X 115573956 115573956 G T SLC6A14 Nonsense_Mutation p.E150* 0.86 TCGA-32-2638-01 10 30336587 30336587 G A KIAA1462 Missense_Mutation p.A52V 0.63 tolerated(0.05) benign(0.211) TCGA-32-2638-01 11 113103495 113103496 - CATTGGGC NCAM1 Frame_Shift_Ins p.Q546Pfs*83 0.15 TCGA-32-2638-01 11 116732043 116732043 C T SIK3 Missense_Mutation p.R685K 0.35 deleterious_low_confidence(0.01) probably_damaging(0.983) TCGA-32-2638-01 11 117985628 117985628 C T TMPRSS4 Missense_Mutation p.T332M 0.27 deleterious(0.04) possibly_damaging(0.727) TCGA-32-2638-01 11 121037459 121037459 C T TECTA Silent p.N1852N 0.26 TCGA-32-2638-01 11 4904033 4904033 C T OR51T1 Missense_Mutation p.R329C 0.34 deleterious(0.02) probably_damaging(0.931) TCGA-32-2638-01 11 5565836 5565836 C A OR52H1 Missense_Mutation p.Q306H 0.07 deleterious(0.01) possibly_damaging(0.883) TCGA-32-2638-01 11 5730417 5730417 G A TRIM22 Missense_Mutation p.G346S 0.31 deleterious(0.01) possibly_damaging(0.872) TCGA-32-2638-01 11 58978683 58978683 C T MPEG1 Silent p.P552P 0.10 TCGA-32-2638-01 11 71260048 71260048 T C KRTAP5-9 Silent p.C115C 0.34 TCGA-32-2638-01 12 10132026 10132026 G T CLEC12A Missense_Mutation p.M104I 0.42 tolerated(0.32) benign(0.026) TCGA-32-2638-01 12 109609642 109609642 G A ACACB Missense_Mutation p.V320I 0.12 deleterious(0.02) probably_damaging(0.993) TCGA-32-2638-01 12 117904983 117904983 C T KSR2 3'UTR 0.42 TCGA-32-2638-01 12 53590523 53590523 C T ITGB7 Missense_Mutation p.R219Q 0.27 deleterious(0.03) probably_damaging(0.997) TCGA-32-2638-01 12 81545555 81545555 T A ACSS3 Intron 0.32 TCGA-32-2638-01 13 21362729 21362729 G - XPO4 Frame_Shift_Del p.Y981* 0.23 TCGA-32-2638-01 13 77459429 77459429 G A KCTD12 Silent p.S285S 0.21 TCGA-32-2638-01 14 63447809 63447809 C T KCNH5 Silent p.K241K 0.30 TCGA-32-2638-01 14 94052956 94052956 A G UNC79 Missense_Mutation p.T763A 0.38 tolerated_low_confidence(0.33) benign(0.004) TCGA-32-2638-01 14 94933658 94933658 G A SERPINA9 Silent p.G248G 0.48 TCGA-32-2638-01 15 21071319 21071319 C T POTEB2 Missense_Mutation p.V98I 0.19 tolerated(0.91) benign(0.17) TCGA-32-2638-01 15 38239874 38239874 G C TMCO5A Missense_Mutation p.K215N 0.12 tolerated(0.06) benign(0.022) TCGA-32-2638-01 16 2812739 2812739 C T SRRM2 Missense_Mutation p.S737F 0.04 unknown(0) TCGA-32-2638-01 17 38062400 38062400 G A GSDMB Silent p.L284L 0.38 TCGA-32-2638-01 17 440383 440383 G A VPS53 Nonsense_Mutation p.Q634* 0.33 TCGA-32-2638-01 17 48156217 48156217 G A ITGA3 Missense_Mutation p.G776E 0.32 deleterious(0.01) possibly_damaging(0.543) TCGA-32-2638-01 17 48776813 48776813 G A ANKRD40 Missense_Mutation p.A242V 0.48 tolerated(0.39) benign(0.067) TCGA-32-2638-01 17 55027963 55027963 G T COIL Missense_Mutation p.Q214K 0.41 tolerated(0.47) benign(0.311) TCGA-32-2638-01 17 66981088 66981088 C T ABCA9 Silent p.P1439P 0.38 TCGA-32-2638-01 18 42529847 42529847 C G SETBP1 Missense_Mutation p.A181G 0.42 tolerated(0.11) possibly_damaging(0.527) TCGA-32-2638-01 18 43310353 43310353 C T SLC14A1 Missense_Mutation p.S79L 0.33 tolerated(0.05) benign(0.014) TCGA-32-2638-01 19 58511157 58511157 C T ZNF606 Intron 0.31 TCGA-32-2638-01 19 7965735 7965735 G T LRRC8E Silent p.L776L 0.30 TCGA-32-2638-01 19 9072143 9072143 T A MUC16 Silent p.S5101S 0.26 TCGA-32-2638-01 1 115221096 115221096 C T AMPD1 Missense_Mutation p.R350H 0.39 deleterious(0.01) benign(0.03) TCGA-32-2638-01 1 155449241 155449241 G C ASH1L Silent p.S1140S 0.37 TCGA-32-2638-01 1 155658773 155658776 CGCG - YY1AP1 5'Flank 0.36 TCGA-32-2638-01 1 177937026 177937026 C T SEC16B Missense_Mutation p.G31R 0.40 tolerated(0.11) benign(0.172) TCGA-32-2638-01 1 216595556 216595556 C T USH2A Silent p.E41E 0.36 TCGA-32-2638-01 1 228564891 228564891 G A OBSCN Silent p.P8683P 0.38 TCGA-32-2638-01 1 238048807 238048807 C G ZP4 Silent p.V348V 0.36 TCGA-32-2638-01 1 64707415 64707418 AAGT - UBE2U Splice_Site p.X226_splice 0.29 TCGA-32-2638-01 22 21272527 21272527 C T CRKL Missense_Mutation p.A102V 0.08 tolerated(0.99) benign(0.005) TCGA-32-2638-01 22 30413988 30413988 A G MTMR3 Missense_Mutation p.T583A 0.37 tolerated(0.19) benign(0.015) TCGA-32-2638-01 22 32626981 32626981 G A SLC5A4 Missense_Mutation p.T368M 0.07 tolerated(0.11) benign(0.041) TCGA-32-2638-01 22 40814904 40814904 C T MKL1 Missense_Mutation p.G513E 0.42 tolerated(0.09) benign(0.012) TCGA-32-2638-01 22 41790269 41790269 C A TEF Silent p.P215P 0.35 TCGA-32-2638-01 2 102483026 102483026 C T MAP4K4 Missense_Mutation p.R703C 0.28 deleterious_low_confidence(0) probably_damaging(0.985) TCGA-32-2638-01 2 174131422 174131422 G A MLTK Missense_Mutation p.A783T 0.59 tolerated_low_confidence(0.13) benign(0.002) TCGA-32-2638-01 2 192261188 192261188 G A MYO1B Missense_Mutation p.A754T 0.43 tolerated(0.49) benign(0.005) TCGA-32-2638-01 2 25674485 25674485 G A DTNB Nonsense_Mutation p.R397* 0.47 TCGA-32-2638-01 2 74007043 74007043 C A DUSP11 Missense_Mutation p.R67L 0.30 tolerated(0.09) benign(0.357) TCGA-32-2638-01 3 141497201 141497201 C T GRK7 Silent p.C25C 0.34 TCGA-32-2638-01 3 149093335 149093335 C G TM4SF1 Missense_Mutation p.G103A 0.43 deleterious(0.02) possibly_damaging(0.583) TCGA-32-2638-01 3 21792472 21792472 G A ZNF385D 5'UTR 0.11 TCGA-32-2638-01 3 67570993 67570993 G C SUCLG2 Silent p.S161S 0.05 TCGA-32-2638-01 3 95374099 95374099 C T MTHFD2P1 RNA 0.33 TCGA-32-2638-01 4 164054388 164054388 A G NAF1 Silent p.D317D 0.46 TCGA-32-2638-01 4 183574978 183574978 T C TENM3 Missense_Mutation p.F348S 0.44 deleterious(0.04) benign(0.307) TCGA-32-2638-01 4 73184402 73184402 C G ADAMTS3 Missense_Mutation p.D458H 0.42 deleterious(0) probably_damaging(0.999) TCGA-32-2638-01 4 78804480 78804480 C T MRPL1 Silent p.P76P 0.32 TCGA-32-2638-01 4 96090460 96090460 G A UNC5C Silent p.S907S 0.43 TCGA-32-2638-01 5 145393517 145393517 C T SH3RF2 Missense_Mutation p.R318C 0.41 deleterious(0) possibly_damaging(0.893) TCGA-32-2638-01 5 21751807 21751807 A G CDH12 3'UTR 0.14 TCGA-32-2638-01 6 116265439 116265439 C - FRK Frame_Shift_Del p.V370* 0.25 TCGA-32-2638-01 6 124979424 124979424 T A NKAIN2 Silent p.P122P 0.34 TCGA-32-2638-01 6 155743923 155743923 C T NOX3 Missense_Mutation p.V405I 0.27 tolerated(0.63) benign(0.004) TCGA-32-2638-01 6 161134138 161134138 C T PLG Silent p.C176C 0.34 TCGA-32-2638-01 7 100680859 100680859 G A MUC17 Silent p.T2054T 0.32 TCGA-32-2638-01 7 115590932 115590932 C T TFEC Missense_Mutation p.D171N 0.17 deleterious(0) probably_damaging(0.987) TCGA-32-2638-01 7 35242129 35242129 C T TBX20 Silent p.P419P 0.16 TCGA-32-2638-01 7 44560418 44560418 C T NPC1L1 Missense_Mutation p.G1028S 0.15 deleterious(0) probably_damaging(1) TCGA-32-2638-01 7 81594957 81594957 C T CACNA2D1 Missense_Mutation p.D843N 0.09 deleterious(0) probably_damaging(0.973) TCGA-32-2638-01 7 88965893 88965893 A G ZNF804B Silent p.P1199P 0.03 TCGA-32-2638-01 9 111659518 111659518 C A IKBKAP Missense_Mutation p.S804I 0.35 tolerated(0.15) benign(0.027) TCGA-32-2638-01 9 18928734 18928734 C A FAM154A Silent p.L247L 0.05 TCGA-32-2638-01 9 21971029 21971029 C T CDKN2A Nonsense_Mutation p.W110* 0.56 TCGA-32-2638-01 X 120181603 120181603 C T GLUD2 Missense_Mutation p.A22V 0.93 tolerated_low_confidence(0.18) benign(0.002) TCGA-32-2638-01 X 147062909 147062909 C T FMR1NB 5'UTR 0.80 TCGA-32-2638-01 X 69283226 69283226 C G OTUD6A Silent p.L284L 1.00 TCGA-32-4208-01 10 5929963 5929963 C T ANKRD16 Missense_Mutation p.A128T 0.39 deleterious(0.01) probably_damaging(0.999) TCGA-32-4208-01 11 11470460 11470460 C T GALNT18 Missense_Mutation p.A87T 0.27 tolerated(0.6) benign(0) TCGA-32-4208-01 11 64602005 64602005 C T CDC42BPG Silent p.S740S 0.09 TCGA-32-4208-01 11 85375510 85375510 G C CREBZF Missense_Mutation p.S137W 0.09 deleterious_low_confidence(0) probably_damaging(0.993) TCGA-32-4208-01 12 101480543 101480543 G C ANO4 Missense_Mutation p.V513L 0.06 tolerated(1) benign(0.373) TCGA-32-4208-01 12 14975979 14975979 T G C12orf60 Missense_Mutation p.F37C 0.11 deleterious(0.03) probably_damaging(0.977) TCGA-32-4208-01 12 65632357 65632357 A G LEMD3 Missense_Mutation p.I591V 0.13 deleterious(0.04) probably_damaging(0.944) TCGA-32-4208-01 13 20233374 20233374 A G MPHOSPH8 Missense_Mutation p.Y579C 0.41 deleterious(0) probably_damaging(1) TCGA-32-4208-01 13 28794497 28794497 A G PAN3 Missense_Mutation p.T328A 0.41 tolerated(0.9) benign(0.001) TCGA-32-4208-01 13 32808846 32808846 A G FRY Missense_Mutation p.D1888G 0.41 deleterious(0) probably_damaging(0.943) TCGA-32-4208-01 13 98086962 98086962 C G RAP2A Missense_Mutation p.L80V 0.46 tolerated(0.09) probably_damaging(0.968) TCGA-32-4208-01 14 20922811 20922811 G T OSGEP Missense_Mutation p.A11D 0.36 deleterious(0) probably_damaging(0.986) TCGA-32-4208-01 14 20922812 20922812 C T OSGEP Missense_Mutation p.A11T 0.35 deleterious(0) probably_damaging(0.968) TCGA-32-4208-01 14 77292858 77292858 C G C14orf166B Nonsense_Mutation p.S7* 0.13 TCGA-32-4208-01 16 19477522 19477522 G A TMC5 Missense_Mutation p.C535Y 0.23 tolerated(1) benign(0) TCGA-32-4208-01 16 2512207 2512208 - CCAGTGATTCCACGGATGCCGCCGCTGCCAAAAC C16orf59 Frame_Shift_Ins p.K240Pfs*118 0.12 TCGA-32-4208-01 17 61613357 61613357 G A KCNH6 Missense_Mutation p.V477M 0.39 deleterious(0) probably_damaging(0.999) TCGA-32-4208-01 17 66551780 66551780 C T FAM20A Missense_Mutation p.R170H 0.38 deleterious(0) possibly_damaging(0.861) TCGA-32-4208-01 17 7578406 7578406 C T TP53 Missense_Mutation p.R175H 0.89 tolerated(0.11) benign(0.308) TCGA-32-4208-01 19 1468647 1468647 G A APC2 Missense_Mutation p.G1783R 0.15 benign(0.004) TCGA-32-4208-01 19 17649991 17649991 G A FAM129C Missense_Mutation p.A241T 0.19 deleterious(0.02) probably_damaging(0.999) TCGA-32-4208-01 19 19822055 19822055 C A ZNF14 3'UTR 0.07 TCGA-32-4208-01 19 43865711 43865711 G T CD177 3'UTR 0.64 TCGA-32-4208-01 19 58371655 58371655 G C ZNF587 3'UTR 0.09 TCGA-32-4208-01 1 101339636 101339636 A G EXTL2 Silent p.H285H 0.30 TCGA-32-4208-01 1 153579914 153579914 G A S100A16 3'UTR 0.35 TCGA-32-4208-01 1 201029914 201029914 G T CACNA1S Missense_Mutation p.R1096S 0.41 deleterious(0) possibly_damaging(0.862) TCGA-32-4208-01 1 92515977 92515977 G C EPHX4 Missense_Mutation p.K236N 0.50 tolerated(0.11) possibly_damaging(0.459) TCGA-32-4208-01 2 209113112 209113112 C T IDH1 Missense_Mutation p.R132H 0.34 deleterious_low_confidence(0.01) possibly_damaging(0.813) TCGA-32-4208-01 2 227729644 227729644 T C RHBDD1 Missense_Mutation p.W79R 0.20 deleterious(0.02) benign(0.114) TCGA-32-4208-01 2 242509549 242509549 G - BOK Frame_Shift_Del p.G121Afs*18 0.19 TCGA-32-4208-01 3 172232698 172232698 T C TNFSF10 Missense_Mutation p.S75G 0.41 deleterious(0.02) benign(0.071) TCGA-32-4208-01 3 172835032 172835032 G C SPATA16 Missense_Mutation p.H164D 0.06 deleterious(0.01) benign(0) TCGA-32-4208-01 3 51387773 51387773 G C DOCK3 Missense_Mutation p.E1353Q 0.03 deleterious(0) probably_damaging(0.997) TCGA-32-4208-01 4 15005707 15005707 G A CPEB2 Silent p.P470P 0.19 TCGA-32-4208-01 4 46252347 46252347 G A GABRA2 Missense_Mutation p.P445L 0.45 deleterious_low_confidence(0) possibly_damaging(0.844) TCGA-32-4208-01 4 84388619 84388641 TTGTAATGAAGCATACATTTCAT - FAM175A Frame_Shift_Del p.N216Rfs*14 0.29 TCGA-32-4208-01 5 178040532 178040532 C T CLK4 Silent p.L256L 0.22 TCGA-32-4208-01 6 151336802 151336802 C T MTHFD1L Silent p.S853S 0.07 TCGA-32-4208-01 6 51799070 51799070 C T PKHD1 Missense_Mutation p.A1987T 0.37 tolerated(0.41) benign(0.244) TCGA-32-4208-01 7 150915908 150915908 G A ABCF2 Nonsense_Mutation p.Q357* 0.04 TCGA-32-4208-01 7 23214036 23214036 A G KLHL7 3'UTR 0.42 TCGA-32-4208-01 8 101270652 101270652 C A RNF19A 3'UTR 0.12 TCGA-32-4208-01 8 144991998 144991998 G C PLEC Silent p.G4134G 0.36 TCGA-32-4208-01 8 85774532 85774532 T C RALYL Silent p.L152L 0.42 TCGA-32-4208-01 X 10181901 10181901 T C CLCN4 Missense_Mutation p.V586A 0.18 tolerated(1) benign(0.001) TCGA-32-4208-01 X 105882786 105882786 G C CXorf57 Missense_Mutation p.V535L 0.04 tolerated(0.93) benign(0.203) TCGA-32-4208-01 X 105882797 105882797 G C CXorf57 Missense_Mutation p.E538D 0.03 deleterious(0.03) benign(0.367) TCGA-32-4208-01 X 200852 200852 C G PLCXD1 5'UTR 0.05 TCGA-32-4208-01 X 76938029 76938029 G A ATRX Nonsense_Mutation p.R907* 0.90 TCGA-32-4208-01 X 77372859 77372859 G C PGK1 Missense_Mutation p.K156N 0.07 deleterious(0.04) benign(0.366) TCGA-32-4208-01 X 77372860 77372860 C T PGK1 Silent p.L157L 0.07 TCGA-32-4209-01 10 98155658 98155658 C T TLL2 Missense_Mutation p.V502M 0.36 deleterious(0) probably_damaging(0.995) TCGA-32-4209-01 11 64591781 64591781 C T CDC42BPG 3'UTR 0.10 TCGA-32-4209-01 12 121176677 121176677 C T ACADS Missense_Mutation p.R330C 0.26 deleterious(0) probably_damaging(0.993) TCGA-32-4209-01 12 40013182 40013182 C G ABCD2 Missense_Mutation p.G79A 0.28 tolerated(0.45) benign(0.003) TCGA-32-4209-01 12 55846834 55846834 C T OR6C2 Silent p.V279V 0.30 TCGA-32-4209-01 12 65637180 65637180 A G LEMD3 Missense_Mutation p.D773G 0.24 tolerated(0.16) probably_damaging(0.997) TCGA-32-4209-01 14 23312494 23312494 C T MMP14 Silent p.H239H 0.46 TCGA-32-4209-01 14 79111744 79111744 G C NRXN3 5'UTR 0.10 TCGA-32-4209-01 14 90651247 90651247 A C KCNK13 Missense_Mutation p.H376P 0.09 tolerated(0.1) benign(0.001) TCGA-32-4209-01 16 19073157 19073157 A T TMC7 Missense_Mutation p.R722W 0.28 deleterious_low_confidence(0) probably_damaging(0.952) TCGA-32-4209-01 16 67472413 67472413 G C ATP6V0D1 3'UTR 0.23 TCGA-32-4209-01 17 19699577 19699577 T G ULK2 Missense_Mutation p.I610L 0.28 tolerated(0.07) probably_damaging(0.982) TCGA-32-4209-01 17 40847561 40847561 G A CNTNAP1 Silent p.P1005P 0.21 TCGA-32-4209-01 17 71384142 71384142 C A SDK2 Missense_Mutation p.Q1409H 0.24 deleterious(0.02) possibly_damaging(0.537) TCGA-32-4209-01 17 80842049 80842049 C T TBCD Nonsense_Mutation p.R502* 0.22 TCGA-32-4209-01 19 12865566 12865566 C T BEST2 Missense_Mutation p.R150C 0.14 deleterious(0.02) probably_damaging(1) TCGA-32-4209-01 19 42224052 42224052 G A CEACAM5 Missense_Mutation p.A566T 0.30 tolerated(1) benign(0.138) TCGA-32-4209-01 19 54783717 54783717 C T LILRB2 Missense_Mutation p.R95Q 0.30 tolerated(0.3) benign(0.031) TCGA-32-4209-01 19 58005550 58005550 G T ZNF419 3'UTR 0.35 TCGA-32-4209-01 19 7805346 7805346 G A CD209 3'UTR 0.12 TCGA-32-4209-01 1 151755433 151755433 C T TDRKH Silent p.G22G 0.04 TCGA-32-4209-01 1 153921628 153921628 G A CRTC2 Missense_Mutation p.S546F 0.05 tolerated(0.54) benign(0.241) TCGA-32-4209-01 1 167358969 167358969 C G POU2F1 Missense_Mutation p.Q320E 0.12 deleterious(0) unknown(0) TCGA-32-4209-01 1 185143825 185143825 G C SWT1 Missense_Mutation p.K182N 0.07 tolerated(0.08) benign(0.086) TCGA-32-4209-01 1 196694295 196694295 G A CFH Missense_Mutation p.D581N 0.36 tolerated(0.61) benign(0.005) TCGA-32-4209-01 1 228285825 228285825 G A ARF1 3'UTR 0.15 TCGA-32-4209-01 1 71418503 71418503 C G PTGER3 3'UTR 0.32 TCGA-32-4209-01 20 1629729 1629729 C A SIRPG Missense_Mutation p.K133N 0.24 deleterious(0) probably_damaging(0.965) TCGA-32-4209-01 20 61340983 61340983 C T NTSR1 Missense_Mutation p.R142C 0.24 deleterious(0) probably_damaging(0.99) TCGA-32-4209-01 20 61340984 61340984 G A NTSR1 Missense_Mutation p.R142H 0.23 deleterious(0.02) possibly_damaging(0.776) TCGA-32-4209-01 22 21341825 21341825 G A LZTR1 Missense_Mutation p.R118H 0.39 deleterious(0) probably_damaging(1) TCGA-32-4209-01 22 29886360 29886360 C A NEFH Missense_Mutation p.P911T 0.09 deleterious_low_confidence(0) unknown(0) TCGA-32-4209-01 2 149793797 149793797 G A KIF5C Splice_Site p.X98_splice 0.08 TCGA-32-4209-01 2 37295836 37295836 T C HEATR5B Missense_Mutation p.M389V 0.21 tolerated(0.34) benign(0.018) TCGA-32-4209-01 2 99013791 99013791 A G CNGA3 3'UTR 0.09 TCGA-32-4209-01 3 120871386 120871386 A G STXBP5L Silent p.E244E 0.29 TCGA-32-4209-01 4 13546023 13546023 C T NKX3-2 Missense_Mutation p.A6T 0.14 tolerated_low_confidence(0.08) benign(0.122) TCGA-32-4209-01 5 154275813 154275813 G C GEMIN5 Missense_Mutation p.H1146D 0.25 deleterious(0.03) benign(0.371) TCGA-32-4209-01 6 7727630 7727630 G A BMP6 Missense_Mutation p.D148N 0.10 tolerated(0.09) benign(0.176) TCGA-32-4210-01 10 15701007 15701007 C T ITGA8 Silent p.T313T 0.86 TCGA-32-4210-01 10 27702997 27702997 C T PTCHD3 Silent p.A61A 0.84 TCGA-32-4210-01 10 89717691 89717691 T G PTEN Missense_Mutation p.M239R 0.88 tolerated(0.06) benign(0.001) TCGA-32-4210-01 10 97779232 97779232 C T CC2D2B Intron 0.86 TCGA-32-4210-01 11 117975409 117975409 G A TMPRSS4 Missense_Mutation p.R105H 0.60 deleterious(0) probably_damaging(0.996) TCGA-32-4210-01 11 122775064 122775064 A G C11orf63 Missense_Mutation p.N259S 0.32 deleterious(0) probably_damaging(0.999) TCGA-32-4210-01 11 46407321 46407321 C T CHRM4 Missense_Mutation p.A263T 0.33 tolerated(0.75) benign(0.108) TCGA-32-4210-01 11 554078 554078 T C LRRC56 Silent p.R477R 0.34 TCGA-32-4210-01 11 55890095 55890095 T A OR8H3 Missense_Mutation p.L83I 0.33 deleterious(0.03) benign(0.242) TCGA-32-4210-01 11 56310099 56310099 A T OR5M11 Missense_Mutation p.I212N 0.40 deleterious(0) probably_damaging(0.981) TCGA-32-4210-01 11 62297453 62297453 T A AHNAK Missense_Mutation p.E1479V 0.37 probably_damaging(0.962) TCGA-32-4210-01 12 108010913 108010913 C T BTBD11 Silent p.G683G 0.39 TCGA-32-4210-01 12 117993076 117993076 T C KSR2 Silent p.T472T 0.08 TCGA-32-4210-01 12 122702873 122702873 G T DIABLO Silent p.T85T 0.33 TCGA-32-4210-01 12 52182513 52182513 C T SCN8A Missense_Mutation p.A1421V 0.08 deleterious(0) probably_damaging(0.988) TCGA-32-4210-01 12 58124715 58124715 C A AGAP2 Missense_Mutation p.G723C 0.11 deleterious(0) probably_damaging(1) TCGA-32-4210-01 14 101489754 101489754 C T MIR411 RNA 0.34 TCGA-32-4210-01 14 23370783 23370783 T C RBM23 3'UTR 0.78 TCGA-32-4210-01 14 44975414 44975414 A G FSCB Silent p.P259P 0.24 TCGA-32-4210-01 14 62541877 62541877 G A SYT16 Missense_Mutation p.R254H 0.58 deleterious(0.04) benign(0.001) TCGA-32-4210-01 16 1270781 1270781 C T CACNA1H Silent p.D2283D 0.26 TCGA-32-4210-01 16 29855978 29855978 G A MVP Missense_Mutation p.R600H 0.19 deleterious(0.05) probably_damaging(0.997) TCGA-32-4210-01 16 31151818 31151818 T C PRSS36 Missense_Mutation p.D721G 0.60 tolerated(0.19) benign(0.422) TCGA-32-4210-01 16 3339529 3339529 G A ZNF263 Silent p.S341S 0.24 TCGA-32-4210-01 16 53686572 53686572 T C RPGRIP1L Missense_Mutation p.N676S 0.31 tolerated(0.39) benign(0.003) TCGA-32-4210-01 16 56473612 56473612 T C NUDT21 Missense_Mutation p.D143G 0.68 deleterious(0) probably_damaging(0.998) TCGA-32-4210-01 16 67261781 67261781 G C TMEM208 Missense_Mutation p.E17Q 0.60 deleterious(0.03) probably_damaging(0.961) TCGA-32-4210-01 16 81942161 81942161 C T PLCG2 Silent p.S566S 0.14 TCGA-32-4210-01 17 5383436 5383436 G T DERL2 Missense_Mutation p.F184L 0.34 deleterious(0) probably_damaging(0.954) TCGA-32-4210-01 17 7577544 7577544 A C TP53 Missense_Mutation p.M246R 0.80 deleterious(0) probably_damaging(1) TCGA-32-4210-01 17 7640511 7640511 C T DNAH2 Missense_Mutation p.R369C 0.39 benign(0.127) TCGA-32-4210-01 17 7943287 7943287 G A ALOX15B Silent p.R145R 0.40 TCGA-32-4210-01 17 9737155 9737155 G A GLP2R Missense_Mutation p.R74Q 0.44 tolerated(1) benign(0.005) TCGA-32-4210-01 18 28659892 28659892 T A DSC2 Missense_Mutation p.K528N 0.38 tolerated(0.39) benign(0.158) TCGA-32-4210-01 18 3126851 3126851 G A MYOM1 Missense_Mutation p.R947C 0.25 deleterious(0.01) probably_damaging(0.967) TCGA-32-4210-01 19 15536548 15536548 G A WIZ Silent p.R371R 0.14 TCGA-32-4210-01 19 42133314 42133314 G A CEACAM4 Silent p.A6A 0.50 TCGA-32-4210-01 19 56422072 56422072 G A NLRP13 Silent p.H713H 0.14 TCGA-32-4210-01 19 6531065 6531065 C T TNFSF9 Silent p.D6D 0.72 TCGA-32-4210-01 1 114225544 114225544 G A MAGI3 Silent p.S1118S 0.15 TCGA-32-4210-01 1 17085042 17085042 C T MST1L RNA 0.09 TCGA-32-4210-01 1 24409117 24409117 G A MYOM3 Silent p.A686A 0.46 TCGA-32-4210-01 1 52486504 52486504 T C TXNDC12 3'UTR 0.07 TCGA-32-4210-01 1 68948414 68948414 T C DEPDC1 Silent p.S359S 0.48 TCGA-32-4210-01 20 24646170 24646170 G A SYNDIG1 3'UTR 0.44 TCGA-32-4210-01 20 2776322 2776322 C T CPXM1 Missense_Mutation p.R548H 0.23 deleterious(0.04) possibly_damaging(0.679) TCGA-32-4210-01 20 3146165 3146165 C T LZTS3 Missense_Mutation p.R434Q 0.26 deleterious(0.01) benign(0.244) TCGA-32-4210-01 20 50401201 50401201 G A SALL4 Missense_Mutation p.A922V 0.29 tolerated(0.64) benign(0.283) TCGA-32-4210-01 20 5996124 5996124 G T CRLS1 Missense_Mutation p.D188Y 0.16 deleterious(0.01) possibly_damaging(0.611) TCGA-32-4210-01 21 30715238 30715238 C G BACH1 3'UTR 0.20 TCGA-32-4210-01 22 21345975 21345975 C A LZTR1 Missense_Mutation p.R284S 0.71 deleterious(0) probably_damaging(1) TCGA-32-4210-01 2 116548668 116548668 T A DPP10 Missense_Mutation p.L519M 0.30 deleterious(0) probably_damaging(0.967) TCGA-32-4210-01 2 135744775 135744775 G A MAP3K19 Missense_Mutation p.T556I 0.49 tolerated(0.48) benign(0) TCGA-32-4210-01 2 163055364 163055364 G A FAP Silent p.S435S 0.13 TCGA-32-4210-01 2 163055365 163055365 C A FAP Missense_Mutation p.S435I 0.13 tolerated(0.06) benign(0.367) TCGA-32-4210-01 2 179421857 179421857 C T TTN Missense_Mutation p.V29342I 0.50 TCGA-32-4210-01 2 179483569 179483569 T A TTN Missense_Mutation p.I15570F 0.46 TCGA-32-4210-01 2 27449783 27449783 A G CAD Missense_Mutation p.K747R 0.35 tolerated(0.12) benign(0.041) TCGA-32-4210-01 3 111312849 111312849 C T ZBED2 Missense_Mutation p.R67H 0.23 tolerated(0.11) probably_damaging(0.91) TCGA-32-4210-01 3 14861995 14861995 G A FGD5 Missense_Mutation p.A473T 0.26 tolerated(0.27) benign(0.001) TCGA-32-4210-01 3 3111789 3111789 G A IL5RA 3'UTR 0.29 TCGA-32-4210-01 4 122744710 122744710 G A CCNA2 Missense_Mutation p.A25V 0.10 tolerated(0.43) benign(0.001) TCGA-32-4210-01 4 144461639 144461639 A T SMARCA5 Missense_Mutation p.I632F 0.40 deleterious(0) probably_damaging(0.977) TCGA-32-4210-01 4 36231022 36231022 C G ARAP2 Missense_Mutation p.E29D 0.22 tolerated(0.24) benign(0.021) TCGA-32-4210-01 4 40440160 40440160 G A RBM47 Missense_Mutation p.R251C 0.26 deleterious(0) probably_damaging(0.982) TCGA-32-4210-01 4 68543331 68543331 G T UBA6 Missense_Mutation p.Q155K 0.33 tolerated(0.11) benign(0.309) TCGA-32-4210-01 4 69344650 69344650 G A TMPRSS11E Missense_Mutation p.A351T 0.27 tolerated(0.07) benign(0.074) TCGA-32-4210-01 4 87671855 87671855 A G PTPN13 Silent p.E961E 0.29 TCGA-32-4210-01 5 11199757 11199757 C T CTNND2 Missense_Mutation p.G593D 0.36 deleterious(0) probably_damaging(1) TCGA-32-4210-01 5 140432384 140432384 C T PCDHB1 Silent p.S443S 0.50 TCGA-32-4210-01 5 140833 140833 T G PLEKHG4B Splice_Site p.X137_splice 0.25 TCGA-32-4210-01 5 154214475 154214475 G A FAXDC2 Missense_Mutation p.S23F 0.13 deleterious(0) probably_damaging(0.963) TCGA-32-4210-01 5 156589852 156589852 T C FAM71B Missense_Mutation p.N475S 0.22 tolerated(0.75) benign(0.009) TCGA-32-4210-01 5 161128598 161128598 C T GABRA6 Missense_Mutation p.A394V 0.48 tolerated(0.63) benign(0.001) TCGA-32-4210-01 5 176884328 176884328 G A DBN1 3'UTR 0.24 TCGA-32-4210-01 5 40681332 40681332 G A PTGER4 Silent p.T79T 0.33 TCGA-32-4210-01 5 90021005 90021005 C A GPR98 Missense_Mutation p.L3337I 0.12 benign(0) TCGA-32-4210-01 6 109480497 109480497 T C CEP57L1 Missense_Mutation p.I283T 0.30 tolerated(0.36) benign(0) TCGA-32-4210-01 6 146708084 146708084 A T GRM1 Missense_Mutation p.E554V 0.18 deleterious(0) probably_damaging(0.999) TCGA-32-4210-01 6 151117039 151117039 G T PLEKHG1 Splice_Site p.X210_splice 0.15 TCGA-32-4210-01 6 152792795 152792795 C T SYNE1 Silent p.L523L 0.19 TCGA-32-4210-01 7 117864828 117864828 C T ANKRD7 5'UTR 0.35 TCGA-32-4210-01 7 29134756 29134756 G A CPVL Missense_Mutation p.R136C 0.10 tolerated(0.07) benign(0.01) TCGA-32-4210-01 7 31594510 31594510 G A CCDC129 Missense_Mutation p.R110H 0.21 tolerated(1) benign(0) TCGA-32-4210-01 7 38293009 38293009 A G TRGJ2 Silent p.F8F 0.32 TCGA-32-4210-01 7 5330388 5330388 C T SLC29A4 Silent p.D65D 0.08 TCGA-32-4210-01 7 92821587 92821587 G A HEPACAM2 Silent p.A455A 0.30 TCGA-32-4210-01 7 93055835 93055835 G A CALCR Missense_Mutation p.R454C 0.31 tolerated(0.07) possibly_damaging(0.802) TCGA-32-4210-01 8 141461384 141461384 T C TRAPPC9 Missense_Mutation p.N128S 0.52 tolerated(0.8) probably_damaging(0.979) TCGA-32-4210-01 8 144378380 144378380 A G ZNF696 Missense_Mutation p.R179G 0.12 deleterious(0) probably_damaging(0.925) TCGA-32-4210-01 8 145806268 145806268 C G ARHGAP39 Silent p.R158R 0.09 TCGA-32-4210-01 8 42037449 42037449 T G PLAT Missense_Mutation p.E453A 0.17 tolerated(0.08) benign(0.293) TCGA-32-4210-01 8 65517238 65517238 C A CYP7B1 Splice_Site p.X411_splice 0.09 TCGA-32-4210-01 9 129643102 129643102 T G ZBTB34 Missense_Mutation p.V471G 0.49 tolerated_low_confidence(0.53) benign(0) TCGA-32-4210-01 9 34623425 34623425 T C ARID3C Missense_Mutation p.K288E 0.67 tolerated(0.05) benign(0.297) TCGA-32-4210-01 9 43628658 43628658 G A SPATA31A6 Missense_Mutation p.S95L 0.76 tolerated(0.74) benign(0) TCGA-32-4210-01 9 86928326 86928326 T A SLC28A3 Missense_Mutation p.N35I 0.29 deleterious(0.05) benign(0.008) TCGA-32-4210-01 9 94487296 94487296 C T ROR2 Missense_Mutation p.G494S 0.64 tolerated(0.44) benign(0.021) TCGA-32-4210-01 X 103495282 103495282 G A ESX1 Missense_Mutation p.A283V 0.95 tolerated(0.06) unknown(0) TCGA-32-4210-01 X 133087081 133087081 G C GPC3 Missense_Mutation p.F111L 0.03 tolerated(0.08) possibly_damaging(0.557) TCGA-32-4210-01 Y 16952864 16952864 C G NLGN4Y Missense_Mutation p.Q725E 0.17 tolerated_low_confidence(0.1) benign(0.066) TCGA-32-4211-01 10 106075308 106075308 C T ITPRIP Missense_Mutation p.V168M 0.47 deleterious(0.01) probably_damaging(0.95) TCGA-32-4211-01 10 23235138 23235138 A G ARMC3 Silent p.E38E 0.09 TCGA-32-4211-01 10 28283881 28283881 G A ARMC4 Missense_Mutation p.A64V 0.05 tolerated(0.34) benign(0.003) TCGA-32-4211-01 10 98084132 98084132 G A DNTT Missense_Mutation p.R287Q 0.50 tolerated(0.48) benign(0.015) TCGA-32-4211-01 12 114832609 114832609 C T TBX5 Silent p.A200A 0.04 TCGA-32-4211-01 12 120596393 120596393 G A GCN1L1 Missense_Mutation p.R926C 0.23 probably_damaging(0.976) TCGA-32-4211-01 12 43846340 43846340 C G ADAMTS20 Missense_Mutation p.R640T 0.91 deleterious(0) probably_damaging(0.997) TCGA-32-4211-01 12 57939864 57939864 C T DCTN2 Missense_Mutation p.D18N 0.89 deleterious(0) possibly_damaging(0.69) TCGA-32-4211-01 12 83251229 83251229 C G TMTC2 Nonsense_Mutation p.S175* 0.03 TCGA-32-4211-01 12 83251308 83251308 C G TMTC2 Silent p.V201V 0.03 TCGA-32-4211-01 12 83251314 83251314 C G TMTC2 Silent p.V203V 0.03 TCGA-32-4211-01 14 105609172 105609172 C T JAG2 Missense_Mutation p.A1193T 0.20 tolerated(0.14) benign(0.26) TCGA-32-4211-01 14 62547880 62547880 G A SYT16 Missense_Mutation p.R441Q 0.37 tolerated(0.09) benign(0.408) TCGA-32-4211-01 14 80130234 80130234 C T NRXN3 Silent p.N813N 0.25 TCGA-32-4211-01 14 91745647 91745647 G A CCDC88C Missense_Mutation p.S1568L 0.17 deleterious(0.05) possibly_damaging(0.477) TCGA-32-4211-01 15 45556870 45556870 G A SLC28A2 Silent p.V202V 0.47 TCGA-32-4211-01 15 63970125 63970125 C T HERC1 Missense_Mutation p.R2330H 0.42 probably_damaging(0.998) TCGA-32-4211-01 15 72608242 72608242 G T CELF6 Silent p.R97R 0.15 TCGA-32-4211-01 16 50763750 50763750 C T NOD2 Silent p.T996T 0.07 TCGA-32-4211-01 17 27899699 27899699 C T TP53I13 Silent p.S351S 0.22 TCGA-32-4211-01 17 30685561 30685561 C T ZNF207 Missense_Mutation p.P70S 0.16 deleterious(0.05) probably_damaging(0.932) TCGA-32-4211-01 17 39725742 39725742 C T KRT9 Missense_Mutation p.R327H 0.35 deleterious(0) probably_damaging(1) TCGA-32-4211-01 17 7643075 7643075 G A DNAH2 Missense_Mutation p.A399T 0.16 probably_damaging(0.993) TCGA-32-4211-01 18 2752502 2752502 G A SMCHD1 Missense_Mutation p.C1433Y 0.20 tolerated(0.4) probably_damaging(0.929) TCGA-32-4211-01 18 7036079 7036079 C T LAMA1 Silent p.A582A 0.26 TCGA-32-4211-01 19 1119057 1119057 G A SBNO2 Missense_Mutation p.P494S 0.08 tolerated(0.09) benign(0.3) TCGA-32-4211-01 19 18898331 18898331 G A COMP Silent p.G368G 0.05 TCGA-32-4211-01 19 3013710 3013710 G A TLE2 Missense_Mutation p.S277F 0.22 deleterious(0.01) probably_damaging(0.999) TCGA-32-4211-01 19 37880558 37880558 G A ZNF527 Missense_Mutation p.S536N 0.31 deleterious(0.04) benign(0.082) TCGA-32-4211-01 19 44933459 44933459 A G ZNF229 Silent p.S499S 0.22 TCGA-32-4211-01 19 53454033 53454033 C T ZNF816 Missense_Mutation p.R332H 0.35 tolerated(0.16) benign(0.014) TCGA-32-4211-01 19 8997446 8997446 T G MUC16 Missense_Mutation p.K13659T 0.04 probably_damaging(0.999) TCGA-32-4211-01 1 12726355 12726355 G A AADACL4 Nonsense_Mutation p.W278* 0.26 TCGA-32-4211-01 1 201332684 201332684 T G TNNT2 Intron 0.11 TCGA-32-4211-01 1 215848824 215848824 C T USH2A Silent p.S4143S 0.29 TCGA-32-4211-01 1 237777926 237777926 T C RYR2 Missense_Mutation p.I1833T 0.34 benign(0.021) TCGA-32-4211-01 1 24194637 24194637 C A FUCA1 Missense_Mutation p.R47L 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-32-4211-01 1 39340374 39340374 T C GJA9 Missense_Mutation p.D466G 0.27 tolerated(0.15) benign(0.027) TCGA-32-4211-01 1 55181647 55181647 G T TTC4 Missense_Mutation p.Q22H 0.24 deleterious(0.02) benign(0.235) TCGA-32-4211-01 20 62198405 62198405 C T HELZ2 Missense_Mutation p.G769D 0.05 deleterious(0) probably_damaging(1) TCGA-32-4211-01 21 32007617 32007617 G A KRTAP20-2 Missense_Mutation p.R12H 0.23 unknown(0) TCGA-32-4211-01 21 45657002 45657002 C T ICOSLG Missense_Mutation p.V52I 0.10 tolerated(0.07) possibly_damaging(0.821) TCGA-32-4211-01 21 47355174 47355174 C T PCBP3 Silent p.D288D 0.24 TCGA-32-4211-01 22 24199112 24199112 C G SLC2A11 5'UTR 0.09 TCGA-32-4211-01 22 32586778 32586778 C T RFPL2 Missense_Mutation p.R373H 0.22 tolerated(0.62) benign(0) TCGA-32-4211-01 22 32756800 32756800 G A RFPL3S Missense_Mutation p.R80W 0.04 benign(0) TCGA-32-4211-01 2 131976234 131976234 G A POTEE Missense_Mutation p.D87N 0.25 deleterious_low_confidence(0.04) possibly_damaging(0.555) TCGA-32-4211-01 2 1459947 1459947 G A TPO Missense_Mutation p.D238N 0.32 deleterious(0) probably_damaging(0.941) TCGA-32-4211-01 2 166850722 166850722 G A SCN1A Missense_Mutation p.R1596C 0.31 deleterious(0) probably_damaging(0.996) TCGA-32-4211-01 2 18765887 18765887 C T NT5C1B Missense_Mutation p.E266K 0.32 deleterious_low_confidence(0.01) benign(0.368) TCGA-32-4211-01 2 191110923 191110923 C T HIBCH Missense_Mutation p.D256N 0.22 tolerated(0.28) benign(0.001) TCGA-32-4211-01 2 21231021 21231021 G A APOB Missense_Mutation p.R2907C 0.03 benign(0.424) TCGA-32-4211-01 2 68691257 68691257 C T FBXO48 3'UTR 0.27 TCGA-32-4211-01 3 122060340 122060340 G A CSTA Missense_Mutation p.G75R 0.25 tolerated(0.08) possibly_damaging(0.455) TCGA-32-4211-01 3 140178466 140178466 C T CLSTN2 Silent p.D359D 0.31 TCGA-32-4211-01 3 49459869 49459870 - A AMT Frame_Shift_Ins p.S6Kfs*22 0.17 TCGA-32-4211-01 4 1018886 1018886 G A FGFRL1 Silent p.T422T 0.41 TCGA-32-4211-01 4 111553638 111553638 T A PITX2 Splice_Site p.X16_splice 0.36 TCGA-32-4211-01 4 114251595 114251595 G A ANK2 Missense_Mutation p.E1032K 0.27 probably_damaging(0.999) TCGA-32-4211-01 4 176594942 176594942 G C GPM6A Missense_Mutation p.F92L 0.31 deleterious(0.04) probably_damaging(0.964) TCGA-32-4211-01 4 38829218 38829218 C T TLR6 Missense_Mutation p.R626H 0.03 tolerated(0.9) benign(0.004) TCGA-32-4211-01 5 13809274 13809274 G A DNAH5 Missense_Mutation p.T2544M 0.05 possibly_damaging(0.791) TCGA-32-4211-01 5 156916128 156916128 C T ADAM19 Silent p.T769T 0.09 TCGA-32-4211-01 6 15504806 15504806 G T JARID2 Missense_Mutation p.A842S 0.18 tolerated(0.64) benign(0.007) TCGA-32-4211-01 6 159653361 159653361 C T FNDC1 Missense_Mutation p.T606M 0.20 deleterious_low_confidence(0) unknown(0) TCGA-32-4211-01 6 167754158 167754158 G A TTLL2 Missense_Mutation p.R257H 0.07 deleterious(0.05) benign(0.244) TCGA-32-4211-01 6 17800257 17800257 T G KIF13A Missense_Mutation p.S848R 0.04 tolerated(0.06) possibly_damaging(0.703) TCGA-32-4211-01 6 398917 398917 G A IRF4 Missense_Mutation p.E243K 0.24 deleterious(0.04) benign(0.439) TCGA-32-4211-01 6 43415637 43415637 C T ABCC10 Silent p.D1307D 0.33 TCGA-32-4211-01 6 46111073 46111073 G C ENPP4 Missense_Mutation p.G353A 0.21 deleterious(0) probably_damaging(1) TCGA-32-4211-01 6 55039298 55039298 G A HCRTR2 5'UTR 0.08 TCGA-32-4211-01 6 6225003 6225003 C T F13A1 Missense_Mutation p.V297I 0.17 tolerated(0.08) benign(0.026) TCGA-32-4211-01 7 100610345 100610345 C T MUC3A 3'UTR 0.10 TCGA-32-4211-01 7 107434196 107434196 C T SLC26A3 Missense_Mutation p.V88I 0.16 tolerated(0.14) possibly_damaging(0.678) TCGA-32-4211-01 7 138432176 138432176 G T ATP6V0A4 Missense_Mutation p.D438E 0.21 tolerated(0.52) benign(0.155) TCGA-32-4211-01 7 142124337 142124337 G A TRBV6-8 Silent p.N47N 0.19 TCGA-32-4211-01 7 143792752 143792752 C T OR2A12 Silent p.F184F 0.19 TCGA-32-4211-01 7 37780661 37780661 G A GPR141 Nonsense_Mutation p.W222* 0.21 TCGA-32-4211-01 7 48092478 48092478 C A C7orf57 Missense_Mutation p.L263I 0.07 tolerated_low_confidence(0.26) benign(0.146) TCGA-32-4211-01 7 72413425 72413425 G A POM121 Missense_Mutation p.G700R 0.08 deleterious(0) probably_damaging(0.993) TCGA-32-4211-01 7 80088106 80088106 C T GNAT3 Missense_Mutation p.D316N 0.15 tolerated(0.44) possibly_damaging(0.493) TCGA-32-4211-01 8 144733275 144733275 G A ZNF623 Silent p.A411A 0.29 TCGA-32-4211-01 8 59409723 59409723 C T CYP7A1 Silent p.P116P 0.31 TCGA-32-4211-01 8 72948586 72948586 T A TRPA1 Missense_Mutation p.Q831L 0.44 deleterious(0) probably_damaging(0.999) TCGA-32-4211-01 9 125486747 125486747 G A OR1L4 Missense_Mutation p.R160H 0.23 tolerated(1) benign(0.013) TCGA-32-4211-01 9 138416710 138416710 G A LCN1 Silent p.E146E 0.14 TCGA-32-4211-01 9 140201475 140201475 C A EXD3 Missense_Mutation p.R853L 0.09 deleterious(0.02) benign(0.029) TCGA-32-4211-01 9 7174858 7174858 C G KDM4C 3'UTR 0.10 TCGA-32-4211-01 X 125686234 125686234 G T DCAF12L1 Missense_Mutation p.L120I 0.05 deleterious(0) probably_damaging(0.998) TCGA-32-4211-01 X 136649543 136649543 G T ZIC3 Silent p.A231A 0.06 TCGA-32-4211-01 X 57021377 57021377 T G SPIN3 Missense_Mutation p.K2Q 0.06 deleterious(0.01) probably_damaging(0.996) TCGA-32-4211-01 X 70680548 70680548 T G TAF1 Missense_Mutation p.M1785R 0.63 tolerated_low_confidence(0.35) benign(0.001) TCGA-32-4213-01 10 114711317 114711317 T C TCF7L2 Missense_Mutation p.L111P 0.11 deleterious(0) benign(0.213) TCGA-32-4213-01 10 46999948 46999948 G A GPRIN2 Silent p.A356A 0.17 TCGA-32-4213-01 10 71905229 71905229 G A TYSND1 Missense_Mutation p.H372Y 0.58 deleterious(0) probably_damaging(1) TCGA-32-4213-01 10 89720805 89720806 - T PTEN Frame_Shift_Ins p.L320Ffs*5 0.38 TCGA-32-4213-01 11 1217887 1217887 C T MUC5AC RNA 0.39 TCGA-32-4213-01 11 60785322 60785322 G C CD6 Silent p.P558P 0.27 TCGA-32-4213-01 11 73076830 73076830 A T ARHGEF17 Missense_Mutation p.T1945S 0.24 deleterious(0.03) possibly_damaging(0.482) TCGA-32-4213-01 11 94731887 94731887 C T KDM4D Missense_Mutation p.R451C 0.07 tolerated(0.24) benign(0.002) TCGA-32-4213-01 12 129360490 129360490 G A GLT1D1 Missense_Mutation p.V34I 0.33 tolerated(1) benign(0) TCGA-32-4213-01 12 21201833 21201833 C A SLCO1B7 Silent p.T394T 0.20 TCGA-32-4213-01 12 48377469 48377469 G T COL2A1 Missense_Mutation p.F664L 0.14 benign(0.191) TCGA-32-4213-01 12 53709176 53709176 G A AAAS Silent p.A114A 0.41 TCGA-32-4213-01 12 89864247 89864247 A G POC1B Missense_Mutation p.I234T 0.35 deleterious(0.03) benign(0.099) TCGA-32-4213-01 13 19751585 19751585 C T TUBA3C Missense_Mutation p.A180T 0.15 deleterious_low_confidence(0.03) possibly_damaging(0.781) TCGA-32-4213-01 13 48954327 48954328 AT - RB1 Frame_Shift_Del p.M484Vfs*8 0.38 TCGA-32-4213-01 14 103447154 103447154 C A CDC42BPB Missense_Mutation p.D366Y 0.33 deleterious(0) probably_damaging(1) TCGA-32-4213-01 14 105415172 105415172 G T AHNAK2 Missense_Mutation p.L2206I 0.37 benign(0.031) TCGA-32-4213-01 14 21552177 21552179 CTG - ARHGEF40 In_Frame_Del p.L1254del 0.43 TCGA-32-4213-01 15 25476003 25476003 G A SNORD115-33 RNA 0.35 TCGA-32-4213-01 15 43928262 43928262 C T CATSPER2 Missense_Mutation p.R333Q 0.25 deleterious(0) probably_damaging(0.995) TCGA-32-4213-01 15 76075404 76075404 A C RN7SL319P 5'Flank 0.32 TCGA-32-4213-01 15 91454437 91454437 C T MAN2A2 Missense_Mutation p.R638C 0.39 deleterious(0) possibly_damaging(0.677) TCGA-32-4213-01 16 11348719 11348719 G T SOCS1 Missense_Mutation p.S206Y 0.21 deleterious(0.01) possibly_damaging(0.693) TCGA-32-4213-01 16 29908260 29908260 G A SEZ6L2 Missense_Mutation p.P132S 0.07 tolerated(0.44) benign(0) TCGA-32-4213-01 16 4042213 4042213 G T ADCY9 Missense_Mutation p.P714Q 0.27 tolerated(0.29) benign(0.346) TCGA-32-4213-01 16 53358755 53358755 C A CHD9 Missense_Mutation p.S2865Y 0.26 unknown(0) TCGA-32-4213-01 16 61687800 61687800 C A CDH8 Missense_Mutation p.L704F 0.03 tolerated(0.28) benign(0.046) TCGA-32-4213-01 17 39594785 39594785 C T KRT38 Silent p.T326T 0.26 TCGA-32-4213-01 17 39768925 39768925 G A KRT16 Missense_Mutation p.R6C 0.22 tolerated(0.07) unknown(0) TCGA-32-4213-01 17 41158875 41158875 G T IFI35 5'UTR 0.34 TCGA-32-4213-01 17 78293396 78293396 C T RNF213 Intron 0.20 TCGA-32-4213-01 17 78447110 78447110 C T NPTX1 Missense_Mutation p.A263T 0.32 deleterious(0.03) benign(0.105) TCGA-32-4213-01 18 14533125 14533125 A G POTEC Silent p.D330D 0.31 TCGA-32-4213-01 19 17330166 17330166 C T USE1 Silent p.A189A 0.19 TCGA-32-4213-01 19 36223857 36223857 T A KMT2B Missense_Mutation p.L2136H 0.20 possibly_damaging(0.839) TCGA-32-4213-01 19 55434942 55434942 G C NLRP7 3'UTR 0.08 TCGA-32-4213-01 19 7707143 7707143 G A STXBP2 Missense_Mutation p.V240M 0.26 deleterious(0.02) probably_damaging(0.935) TCGA-32-4213-01 1 104162248 104162248 G A AMY2A Missense_Mutation p.E196K 0.15 tolerated(0.08) benign(0.026) TCGA-32-4213-01 1 145439907 145439907 C T TXNIP Silent p.V151V 0.23 TCGA-32-4213-01 1 148932827 148932827 A T RP11-14N7.2 RNA 0.06 TCGA-32-4213-01 1 16727024 16727024 A G SPATA21 Intron 0.18 TCGA-32-4213-01 1 201182608 201182608 C T IGFN1 Missense_Mutation p.R2863W 0.29 benign(0.008) TCGA-32-4213-01 1 20944973 20944973 C T CDA Missense_Mutation p.T118I 0.07 tolerated(0.09) probably_damaging(0.974) TCGA-32-4213-01 1 23660032 23660032 C T HNRNPR Silent p.V159V 0.33 TCGA-32-4213-01 21 10934961 10934961 G T TPTE Missense_Mutation p.H278N 0.14 deleterious(0) possibly_damaging(0.665) TCGA-32-4213-01 21 30547106 30547106 G A MAP3K7CL Missense_Mutation p.E208K 0.28 tolerated(0.56) probably_damaging(0.959) TCGA-32-4213-01 21 34925244 34925244 A G SON Missense_Mutation p.D1236G 0.31 benign(0.176) TCGA-32-4213-01 21 45503036 45503036 A G TRAPPC10 Silent p.R697R 0.34 TCGA-32-4213-01 21 47531965 47531965 C T COL6A2 Missense_Mutation p.T63M 0.30 tolerated(0.14) benign(0.376) TCGA-32-4213-01 22 50967631 50967631 G A TYMP Silent p.S117S 0.32 TCGA-32-4213-01 2 179413171 179413171 C T TTN Missense_Mutation p.R31061H 0.31 TCGA-32-4213-01 2 214204919 214204919 A G SPAG16 Missense_Mutation p.K190R 0.35 tolerated(0.05) possibly_damaging(0.488) TCGA-32-4213-01 2 216300455 216300455 G A FN1 Missense_Mutation p.T24M 0.10 tolerated(0.34) benign(0.336) TCGA-32-4213-01 2 220046155 220046155 C T FAM134A Silent p.S283S 0.32 TCGA-32-4213-01 2 220136434 220136434 G A TUBA4B RNA 0.36 TCGA-32-4213-01 2 226447174 226447174 C A NYAP2 Silent p.S347S 0.12 TCGA-32-4213-01 2 231406616 231406616 G A SP100 Missense_Mutation p.G805R 0.25 tolerated(0.37) benign(0.001) TCGA-32-4213-01 2 70457951 70457951 A - TIA1 Frame_Shift_Del p.H54Mfs*10 0.30 TCGA-32-4213-01 4 110882086 110882086 C A EGF Missense_Mutation p.S377Y 0.35 deleterious(0) probably_damaging(0.999) TCGA-32-4213-01 4 186299458 186299458 A G LRP2BP 5'UTR 0.08 TCGA-32-4213-01 4 68919502 68919502 T C TMPRSS11F 3'UTR 0.14 TCGA-32-4213-01 4 74464408 74464408 G T RASSF6 Silent p.T63T 0.23 TCGA-32-4213-01 5 13883072 13883072 C A DNAH5 Nonsense_Mutation p.E1039* 0.41 TCGA-32-4213-01 5 161524689 161524689 C T GABRG2 Missense_Mutation p.R125C 0.33 deleterious(0) probably_damaging(0.999) TCGA-32-4213-01 6 126080811 126080811 G A HEY2 Missense_Mutation p.A293T 0.33 deleterious(0.02) probably_damaging(0.978) TCGA-32-4213-01 6 32410459 32410459 C T HLA-DRA Missense_Mutation p.P106L 0.30 tolerated(0.09) benign(0.109) TCGA-32-4213-01 6 38773311 38773311 A - DNAH8 Frame_Shift_Del p.D813Afs*7 0.23 TCGA-32-4213-01 7 100550132 100550132 C T MUC3A Missense_Mutation p.T238I 0.19 deleterious_low_confidence(0.01) unknown(0) TCGA-32-4213-01 7 114303551 114303551 G A FOXP2 Missense_Mutation p.A631T 0.33 tolerated(0.93) benign(0.145) TCGA-32-4213-01 7 141490298 141490298 T - TAS2R5 Frame_Shift_Del p.L46Pfs*16 0.38 TCGA-32-4213-01 7 57194352 57194352 C T ZNF479 Missense_Mutation p.R38Q 0.26 tolerated(1) benign(0.004) TCGA-32-4213-01 7 6189851 6189851 C T USP42 Missense_Mutation p.A675V 0.24 tolerated(0.49) benign(0.035) TCGA-32-4213-01 7 70597882 70597882 G A WBSCR17 Missense_Mutation p.A32T 0.36 tolerated_low_confidence(1) benign(0) TCGA-32-4213-01 8 27362585 27362585 G A EPHX2 Silent p.S153S 0.31 TCGA-32-4213-01 8 27455711 27455711 G A CLU 3'UTR 0.21 TCGA-32-4213-01 8 87229698 87229698 C T SLC7A13 Splice_Site p.X393_splice 0.27 TCGA-32-4213-01 9 140953153 140953153 A G CACNA1B Missense_Mutation p.I1481V 0.11 tolerated(0.05) possibly_damaging(0.809) TCGA-32-4213-01 X 105181458 105181458 C A NRK Missense_Mutation p.S1229Y 0.29 deleterious(0) probably_damaging(0.996) TCGA-32-4213-01 X 48750934 48750934 C T TIMM17B 3'UTR 0.22 TCGA-32-4213-01 X 54986282 54986282 C T PFKFB1 Missense_Mutation p.S121N 0.32 benign(0.005) TCGA-32-4213-01 X 57020821 57020821 C T SPIN3 Missense_Mutation p.R187H 0.30 tolerated(0.41) benign(0.001) TCGA-32-4213-01 X 64722249 64722249 C T ZC3H12B Silent p.I557I 0.08 TCGA-32-4213-01 X 8766427 8766427 G T FAM9A Missense_Mutation p.P105H 0.29 deleterious_low_confidence(0) probably_damaging(0.979) TCGA-32-4719-01 10 24873489 24873489 A C ARHGAP21 Missense_Mutation p.L1910R 0.64 tolerated_low_confidence(0.4) benign(0.008) TCGA-32-4719-01 10 93786503 93786503 G A BTAF1 Missense_Mutation p.G1744R 0.10 deleterious(0) probably_damaging(1) TCGA-32-4719-01 11 121000704 121000704 C T TECTA Missense_Mutation p.R909C 0.26 tolerated(0.06) possibly_damaging(0.892) TCGA-32-4719-01 11 46894746 46894746 G A LRP4 Silent p.I1496I 0.17 TCGA-32-4719-01 11 55135883 55135883 C T OR4A15 Missense_Mutation p.A175V 0.42 tolerated_low_confidence(1) benign(0.003) TCGA-32-4719-01 12 109889455 109889455 C T KCTD10 Missense_Mutation p.R296H 0.25 deleterious_low_confidence(0) possibly_damaging(0.84) TCGA-32-4719-01 12 18699324 18699324 G A PIK3C2G Missense_Mutation p.R1142H 0.25 deleterious(0) probably_damaging(0.999) TCGA-32-4719-01 12 50035549 50035549 T G FMNL3 3'UTR 0.25 TCGA-32-4719-01 12 53218087 53218087 G T KRT79 Missense_Mutation p.N305K 0.25 deleterious(0) benign(0.347) TCGA-32-4719-01 12 60169207 60169207 T G SLC16A7 Silent p.L377L 0.30 TCGA-32-4719-01 14 101498368 101498368 C T MIR543 RNA 0.08 TCGA-32-4719-01 14 20389343 20389343 A T OR4K5 Missense_Mutation p.Y193F 0.35 deleterious(0.03) probably_damaging(0.909) TCGA-32-4719-01 15 26825472 26825472 C T GABRB3 Missense_Mutation p.A226T 0.32 tolerated(0.49) benign(0.037) TCGA-32-4719-01 16 1867224 1867224 G A HAGH Missense_Mutation p.A197V 0.44 deleterious(0.01) probably_damaging(0.991) TCGA-32-4719-01 16 20376785 20376785 G A PDILT Silent p.N398N 0.45 TCGA-32-4719-01 16 76350287 76350287 C T CNTNAP4 Intron 0.44 TCGA-32-4719-01 16 88705562 88705562 G A IL17C Silent p.Q60Q 0.47 TCGA-32-4719-01 17 15516962 15516962 G A RP11-385D13.1 Silent p.H632H 0.16 TCGA-32-4719-01 17 3564108 3564108 G C CTNS 3'UTR 0.11 TCGA-32-4719-01 17 38340589 38340589 C T RAPGEFL1 Silent p.G35G 0.44 TCGA-32-4719-01 17 57665340 57665340 C T DHX40 Missense_Mutation p.A503V 0.10 tolerated(1) benign(0.014) TCGA-32-4719-01 17 62019282 62019282 G A SCN4A Missense_Mutation p.R1454W 0.36 deleterious(0) probably_damaging(0.994) TCGA-32-4719-01 17 73997504 73997504 G T CDK3 5'UTR 0.35 TCGA-32-4719-01 18 6982557 6982557 C T LAMA1 Silent p.A1943A 0.39 TCGA-32-4719-01 19 1805392 1805392 C A ATP8B3 Missense_Mutation p.K295N 0.22 tolerated(0.23) benign(0.405) TCGA-32-4719-01 19 2227030 2227030 G A DOT1L Missense_Mutation p.A1504T 0.29 tolerated_low_confidence(0.15) probably_damaging(0.988) TCGA-32-4719-01 19 51503887 51503887 G A KLK8 Missense_Mutation p.S53L 0.34 tolerated(0.67) benign(0) TCGA-32-4719-01 19 58868247 58868247 C T ZNF497 Missense_Mutation p.G252D 0.22 tolerated(0.07) probably_damaging(0.948) TCGA-32-4719-01 19 9237058 9237058 G A OR7G3 Missense_Mutation p.S190F 0.16 deleterious(0) probably_damaging(0.998) TCGA-32-4719-01 1 156554756 156554756 G A TTC24 Missense_Mutation p.V447I 0.40 deleterious(0.01) benign(0.036) TCGA-32-4719-01 1 157068529 157068529 G T ETV3L Missense_Mutation p.P152Q 0.14 deleterious(0.01) probably_damaging(0.916) TCGA-32-4719-01 1 18809869 18809869 G A KLHDC7A 3'UTR 0.09 TCGA-32-4719-01 1 204214763 204214763 G A PLEKHA6 Missense_Mutation p.T671M 0.44 deleterious(0) possibly_damaging(0.893) TCGA-32-4719-01 1 24186383 24186383 C G FUCA1 Missense_Mutation p.D225H 0.31 deleterious(0.04) probably_damaging(0.994) TCGA-32-4719-01 1 248458330 248458330 C T OR2T12 Missense_Mutation p.R184H 0.37 tolerated(0.13) benign(0.177) TCGA-32-4719-01 1 53544261 53544261 G A PODN Missense_Mutation p.R408Q 0.41 tolerated(0.18) benign(0.396) TCGA-32-4719-01 1 62299351 62299351 C G INADL Missense_Mutation p.T669S 0.40 tolerated(0.85) benign(0.011) TCGA-32-4719-01 21 39755623 39755623 A G ERG Missense_Mutation p.V388A 0.41 deleterious(0) probably_damaging(0.998) TCGA-32-4719-01 21 43230571 43230571 C T PRDM15 Missense_Mutation p.C1230Y 0.19 deleterious(0) probably_damaging(0.995) TCGA-32-4719-01 22 46931595 46931595 G A CELSR1 Silent p.N491N 0.37 TCGA-32-4719-01 2 131128796 131128796 G A PTPN18 Missense_Mutation p.A317T 0.33 deleterious(0.03) possibly_damaging(0.743) TCGA-32-4719-01 2 141812781 141812781 A T LRP1B Missense_Mutation p.C486S 0.16 benign(0.152) TCGA-32-4719-01 2 179606204 179606204 G T TTN Missense_Mutation p.T3919N 0.44 TCGA-32-4719-01 2 216232682 216232682 C G FN1 Missense_Mutation p.V2308L 0.26 deleterious(0.04) benign(0.061) TCGA-32-4719-01 2 223066852 223066852 C T PAX3 Missense_Mutation p.A411T 0.12 deleterious_low_confidence(0.03) possibly_damaging(0.843) TCGA-32-4719-01 2 239049594 239049594 G A KLHL30 Missense_Mutation p.A67T 0.40 tolerated(0.34) benign(0.048) TCGA-32-4719-01 3 15778600 15778600 G A ANKRD28 Silent p.N134N 0.35 TCGA-32-4719-01 3 187443315 187443315 C T BCL6 Missense_Mutation p.C604Y 0.40 deleterious(0) possibly_damaging(0.789) TCGA-32-4719-01 5 137476545 137476545 C T BRD8 Missense_Mutation p.R1155K 0.35 tolerated(1) benign(0.022) TCGA-32-4719-01 5 38463973 38463974 - T EGFLAM Frame_Shift_Ins p.M981Yfs*147 0.31 TCGA-32-4719-01 6 17764301 17764301 C T KIF13A 3'UTR 0.45 TCGA-32-4719-01 6 33255194 33255194 G A WDR46 Missense_Mutation p.R273C 0.45 deleterious(0) probably_damaging(0.991) TCGA-32-4719-01 7 142448444 142448444 C T TRBV29-1 Missense_Mutation p.S13F 0.28 deleterious(0.01) unknown(0) TCGA-32-4719-01 7 142750291 142750291 C T OR6V1 Missense_Mutation p.P285L 0.40 deleterious(0.01) probably_damaging(0.915) TCGA-32-4719-01 7 20199676 20199676 A G MACC1 Missense_Mutation p.F103S 0.41 tolerated(0.28) probably_damaging(0.997) TCGA-32-4719-01 7 20767947 20767947 G A ABCB5 Silent p.S912S 0.37 TCGA-32-4719-01 8 25199918 25199918 G A DOCK5 Missense_Mutation p.V838M 0.18 tolerated(0.12) benign(0.135) TCGA-32-4719-01 8 7320275 7320275 G A SPAG11B Silent p.H56H 0.11 TCGA-32-4719-01 9 116259676 116259677 - GCTGAGAG RGS3 Frame_Shift_Ins 0.11 TCGA-32-4719-01 9 140510056 140510056 T A C9orf37 3'UTR 0.10 TCGA-32-4719-01 9 426982 426982 G T DOCK8 Splice_Site p.X1446_splice 0.61 TCGA-32-4719-01 X 107301373 107301373 G A VSIG1 Missense_Mutation p.R52Q 0.72 tolerated(0.65) benign(0.041) TCGA-32-4719-01 X 37028050 37028050 C T FAM47C Missense_Mutation p.R523C 0.71 tolerated_low_confidence(0.14) probably_damaging(0.988) TCGA-32-4719-01 X 68725663 68725663 C T FAM155B Missense_Mutation p.P180S 0.25 tolerated(0.32) probably_damaging(0.986) TCGA-32-4719-01 X 91090711 91090711 G A PCDH11X Missense_Mutation p.G70R 0.75 tolerated(0.07) possibly_damaging(0.868) TCGA-32-5222-01 10 1229068 1229068 G A ADARB2 3'UTR 0.73 TCGA-32-5222-01 10 89692902 89692902 G A PTEN Missense_Mutation p.G129E 0.61 deleterious(0) probably_damaging(0.998) TCGA-32-5222-01 11 111943820 111943820 G A PIH1D2 Missense_Mutation p.P27S 0.56 deleterious(0) probably_damaging(1) TCGA-32-5222-01 11 130064098 130064098 C A ST14 Missense_Mutation p.N310K 0.31 deleterious(0) probably_damaging(0.958) TCGA-32-5222-01 11 35454046 35454046 G A PAMR1 Missense_Mutation p.P691L 0.31 deleterious(0.04) probably_damaging(1) TCGA-32-5222-01 11 44331575 44331575 G A ALX4 Missense_Mutation p.P13L 0.43 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-32-5222-01 11 5529018 5529018 G A UBQLN3 Missense_Mutation p.L591F 0.21 tolerated(0.75) benign(0.126) TCGA-32-5222-01 11 82972783 82972783 A G CCDC90B 3'UTR 0.28 TCGA-32-5222-01 12 52938490 52938490 G A KRT71 Silent p.G466G 0.26 TCGA-32-5222-01 12 53292563 53292563 C T KRT8 Missense_Mutation p.A396T 0.31 deleterious(0.04) benign(0.087) TCGA-32-5222-01 12 56436346 56436346 C T RPS26 Silent p.A47A 0.20 TCGA-32-5222-01 12 71523126 71523126 T C TSPAN8 Silent p.G215G 0.26 TCGA-32-5222-01 12 8212173 8212173 C T C3AR1 Silent p.P203P 0.03 TCGA-32-5222-01 13 20356951 20356951 G A PSPC1 5'UTR 0.36 TCGA-32-5222-01 13 27664021 27664021 G A USP12 Missense_Mutation p.R245W 0.31 deleterious(0) possibly_damaging(0.7) TCGA-32-5222-01 13 36748890 36748890 C T SOHLH2 Missense_Mutation p.R330Q 0.38 tolerated(0.17) probably_damaging(0.986) TCGA-32-5222-01 13 49070369 49070369 A T RCBTB2 Missense_Mutation p.N491K 0.04 deleterious(0) possibly_damaging(0.521) TCGA-32-5222-01 13 58207833 58207833 G A PCDH17 Missense_Mutation p.G385R 0.07 deleterious(0) probably_damaging(1) TCGA-32-5222-01 13 58208729 58208729 G A PCDH17 Silent p.S683S 0.41 TCGA-32-5222-01 13 77692621 77692624 AGTT - MYCBP2 Intron 0.34 TCGA-32-5222-01 14 105418199 105418199 C T AHNAK2 Missense_Mutation p.V1197M 0.34 benign(0.009) TCGA-32-5222-01 15 101929721 101929721 A G PCSK6 Missense_Mutation p.S419P 0.32 deleterious(0) probably_damaging(0.997) TCGA-32-5222-01 15 43818898 43818898 C T MAP1A Missense_Mutation p.R1743W 0.34 possibly_damaging(0.599) TCGA-32-5222-01 15 83935703 83935703 C T BNC1 Missense_Mutation p.R107H 0.40 deleterious(0) possibly_damaging(0.863) TCGA-32-5222-01 16 14294324 14294324 G A MKL2 Intron 0.33 TCGA-32-5222-01 16 2025082 2025082 C T TBL3 Silent p.D206D 0.42 TCGA-32-5222-01 16 58287944 58287944 C T CCDC113 Missense_Mutation p.R91C 0.32 tolerated(0.08) benign(0.028) TCGA-32-5222-01 17 17119805 17119805 C T FLCN Missense_Mutation p.V397M 0.35 tolerated(0.09) benign(0.229) TCGA-32-5222-01 17 45471419 45471419 C T EFCAB13 Silent p.F585F 0.29 TCGA-32-5222-01 18 63547824 63547824 G A CDH7 Silent p.R684R 0.22 TCGA-32-5222-01 19 18054397 18054397 C T CCDC124 Missense_Mutation p.P182L 0.27 deleterious(0) probably_damaging(1) TCGA-32-5222-01 19 36303168 36303168 C T PRODH2 Silent p.A202A 0.21 TCGA-32-5222-01 19 38991601 38991601 G A RYR1 Missense_Mutation p.D2529N 0.28 benign(0.046) TCGA-32-5222-01 19 40730663 40730663 C T CNTD2 Missense_Mutation p.R108H 0.45 deleterious(0) probably_damaging(0.999) TCGA-32-5222-01 19 42342041 42342041 G A LYPD4 Missense_Mutation p.T169M 0.26 tolerated(0.11) benign(0.023) TCGA-32-5222-01 19 44008217 44008217 T G PHLDB3 Missense_Mutation p.E18D 0.16 deleterious_low_confidence(0.02) benign(0.346) TCGA-32-5222-01 19 51330300 51330300 G A KLK15 Silent p.N105N 0.31 TCGA-32-5222-01 19 52034114 52034114 G A SIGLEC6 Missense_Mutation p.T176M 0.27 tolerated(0.07) probably_damaging(0.978) TCGA-32-5222-01 19 55143056 55143056 G A LILRB1 Missense_Mutation p.R59H 0.26 tolerated(1) benign(0) TCGA-32-5222-01 19 868170 868170 C T MED16 Silent p.P855P 0.07 TCGA-32-5222-01 1 114267378 114267378 C A PHTF1 Intron 0.50 TCGA-32-5222-01 1 152325929 152325929 G A FLG2 Nonsense_Mutation p.Q1445* 0.27 TCGA-32-5222-01 1 158632643 158632643 C G SPTA1 Missense_Mutation p.L771F 0.53 deleterious(0) probably_damaging(1) TCGA-32-5222-01 1 216256823 216256823 T C USH2A Missense_Mutation p.N1758S 0.26 benign(0.113) TCGA-32-5222-01 1 28858379 28858379 C - RCC1 Frame_Shift_Del p.Q78Sfs*8 0.27 TCGA-32-5222-01 20 10603963 10603963 A G SLX4IP Missense_Mutation p.E388G 0.26 tolerated(0.06) benign(0.003) TCGA-32-5222-01 20 47585807 47585807 G A ARFGEF2 Missense_Mutation p.D395N 0.26 deleterious(0.04) benign(0.16) TCGA-32-5222-01 20 47591341 47591341 G A ARFGEF2 Silent p.V568V 0.53 TCGA-32-5222-01 20 50769893 50769893 C T ZFP64 Missense_Mutation p.V280M 0.24 tolerated(0.06) probably_damaging(0.999) TCGA-32-5222-01 21 15352263 15352263 A G ANKRD20A11P 5'Flank 0.33 TCGA-32-5222-01 22 22868791 22868791 C A ZNF280A Missense_Mutation p.K388N 0.34 deleterious(0) probably_damaging(0.996) TCGA-32-5222-01 2 101670635 101670635 C T TBC1D8 Missense_Mutation p.R174H 0.32 deleterious(0.02) probably_damaging(1) TCGA-32-5222-01 2 102644815 102644815 A G IL1R2 Silent p.L386L 0.37 TCGA-32-5222-01 2 103040874 103040874 G A IL18RAP Silent p.K193K 0.31 TCGA-32-5222-01 2 227660008 227660008 C T IRS1 Silent p.V1149V 0.39 TCGA-32-5222-01 2 234923261 234923261 G T TRPM8 3'UTR 0.48 TCGA-32-5222-01 2 65296813 65296813 C T CEP68 Missense_Mutation p.H79Y 0.20 tolerated(1) benign(0.001) TCGA-32-5222-01 2 84652596 84652596 C A SUCLG1 Missense_Mutation p.Q319H 0.42 deleterious(0) benign(0.016) TCGA-32-5222-01 2 87073862 87073862 C G CD8B Silent p.L176L 0.26 TCGA-32-5222-01 3 130174391 130174391 C T COL6A5 Missense_Mutation p.T2224M 0.29 tolerated_low_confidence(0.07) benign(0) TCGA-32-5222-01 3 167508226 167508226 T C SERPINI1 Missense_Mutation p.M106T 0.39 deleterious(0.01) possibly_damaging(0.5) TCGA-32-5222-01 3 40457378 40457378 G A ENTPD3 Silent p.T215T 0.38 TCGA-32-5222-01 3 51418534 51418534 C T DOCK3 Silent p.D1879D 0.34 TCGA-32-5222-01 4 142155058 142155058 C T ZNF330 Missense_Mutation p.T293I 0.39 tolerated_low_confidence(0.22) benign(0.001) TCGA-32-5222-01 4 167656162 167656162 A G SPOCK3 Silent p.D407D 0.38 TCGA-32-5222-01 5 13766102 13766102 A T DNAH5 Missense_Mutation p.F3362I 0.02 benign(0.015) TCGA-32-5222-01 5 140263516 140263516 G A PCDHA13 Missense_Mutation p.V555M 0.33 deleterious_low_confidence(0) probably_damaging(0.997) TCGA-32-5222-01 5 140774370 140774370 G A PCDHGA8 Missense_Mutation p.V664M 0.43 deleterious_low_confidence(0.03) possibly_damaging(0.694) TCGA-32-5222-01 5 36035762 36035762 C T UGT3A2 3'UTR 0.36 TCGA-32-5222-01 6 29408448 29408448 G T OR10C1 Missense_Mutation p.R219L 0.37 tolerated(0.34) benign(0.095) TCGA-32-5222-01 6 44122464 44122464 G A TMEM63B Silent p.V781V 0.35 TCGA-32-5222-01 6 46656737 46656737 C T TDRD6 Missense_Mutation p.T291M 0.45 tolerated(0.17) benign(0.16) TCGA-32-5222-01 6 52659006 52659006 C T GSTA1 Missense_Mutation p.V111I 0.34 tolerated(0.17) benign(0) TCGA-32-5222-01 6 62995898 62995898 T A KHDRBS2 5'UTR 0.47 TCGA-32-5222-01 6 74063914 74063914 G A DPPA5 Missense_Mutation p.P12L 0.39 tolerated(0.21) benign(0.014) TCGA-32-5222-01 7 142326801 142326801 G C TRBV19 Missense_Mutation p.K33N 0.03 tolerated(0.27) benign(0.069) TCGA-32-5222-01 7 43484403 43484403 G A HECW1 Silent p.T544T 0.18 TCGA-32-5222-01 7 80433421 80433421 C G SEMA3C Splice_Site p.X267_splice 0.02 TCGA-32-5222-01 7 82585982 82585982 A G PCLO Silent p.D1429D 0.23 TCGA-32-5222-01 8 144994985 144994985 G A PLEC Nonsense_Mutation p.R3139* 0.45 TCGA-32-5222-01 8 24178776 24178776 T C ADAM28 Missense_Mutation p.F232L 0.40 tolerated(0.11) benign(0.083) TCGA-32-5222-01 8 53044717 53044717 C T ST18 Missense_Mutation p.G823S 0.39 tolerated(0.13) possibly_damaging(0.687) TCGA-32-5222-01 9 100692686 100692686 C T HEMGN Missense_Mutation p.E331K 0.35 tolerated(0.1) benign(0.003) TCGA-32-5222-01 9 107298286 107298286 G A OR13C3 Missense_Mutation p.T270M 0.39 deleterious(0) probably_damaging(0.997) TCGA-32-5222-01 9 107331551 107331551 T C OR13C8 Missense_Mutation p.Y35H 0.38 deleterious(0.02) possibly_damaging(0.824) TCGA-32-5222-01 9 35650887 35650887 C T SIT1 5'UTR 0.40 TCGA-32-5222-01 X 151533006 151533006 T C GABRA3 Missense_Mutation p.S13G 0.80 tolerated_low_confidence(0.3) benign(0) TCGA-32-5222-01 X 32380981 32380981 C T DMD Missense_Mutation p.R1750K 0.79 benign(0.14) TCGA-32-5222-01 X 99661954 99661954 T C PCDH19 Missense_Mutation p.T548A 0.06 deleterious(0) probably_damaging(0.987) TCGA-41-2571-01 10 105209447 105209447 G A CALHM2 Silent p.A84A 0.61 TCGA-41-2571-01 10 133954043 133954043 C T JAKMIP3 Missense_Mutation p.T478M 0.64 tolerated(0.09) benign(0.397) TCGA-41-2571-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.71 TCGA-41-2571-01 11 32615446 32615446 G A EIF3M Missense_Mutation p.G190R 0.40 tolerated(0.13) benign(0.236) TCGA-41-2571-01 11 47364810 47364810 C T MYBPC3 Splice_Site p.X409_splice 0.30 TCGA-41-2571-01 11 93796724 93796724 G T HEPHL1 Missense_Mutation p.V156F 0.28 deleterious(0) probably_damaging(1) TCGA-41-2571-01 11 94335056 94335056 C T PIWIL4 Silent p.S492S 0.34 TCGA-41-2571-01 12 5908716 5908716 G A ANO2 Missense_Mutation p.R334C 0.25 tolerated(0.07) probably_damaging(0.999) TCGA-41-2571-01 12 6128359 6128359 C T VWF Missense_Mutation p.V1409I 0.38 tolerated(1) possibly_damaging(0.661) TCGA-41-2571-01 12 96641080 96641080 C T ELK3 Silent p.T190T 0.36 TCGA-41-2571-01 15 85478399 85478399 G A SLC28A1 Missense_Mutation p.V453M 0.40 tolerated(0.1) possibly_damaging(0.658) TCGA-41-2571-01 16 28507386 28507386 G A APOBR Missense_Mutation p.G342S 0.44 deleterious(0.02) probably_damaging(0.931) TCGA-41-2571-01 16 30080984 30080984 C T ALDOA Silent p.P317P 0.33 TCGA-41-2571-01 16 85701868 85701868 C - GSE1 Frame_Shift_Del p.T1087Lfs*51 0.35 TCGA-41-2571-01 17 21319073 21319073 C T KCNJ12 Missense_Mutation p.T140M 0.20 deleterious(0) probably_damaging(0.998) TCGA-41-2571-01 17 48268238 48268238 G T COL1A1 Silent p.G761G 0.42 TCGA-41-2571-01 17 72367987 72367987 G A GPR142 Missense_Mutation p.A213T 0.35 tolerated(0.07) benign(0.435) TCGA-41-2571-01 17 914060 914060 G A ABR Silent p.N715N 0.26 TCGA-41-2571-01 18 3215195 3215195 G A MYOM1 Silent p.C9C 0.14 TCGA-41-2571-01 18 32838036 32838036 T A ZSCAN30 Intron 0.37 TCGA-41-2571-01 18 43205722 43205722 C T SLC14A2 Silent p.D75D 0.30 TCGA-41-2571-01 19 10397651 10397651 C T ICAM4 5'UTR 0.30 TCGA-41-2571-01 19 19166113 19166113 G T ARMC6 Missense_Mutation p.A355S 0.21 tolerated(0.13) possibly_damaging(0.848) TCGA-41-2571-01 19 43259170 43259170 G A PSG8 Missense_Mutation p.R320C 0.43 tolerated(0.16) possibly_damaging(0.788) TCGA-41-2571-01 19 46268882 46268882 G A SIX5 Silent p.P699P 0.46 TCGA-41-2571-01 19 46307927 46307927 G A RSPH6A Silent p.P412P 0.35 TCGA-41-2571-01 19 50978584 50978584 G A FAM71E1 Silent p.F163F 0.22 TCGA-41-2571-01 19 5785666 5785666 C T DUS3L Missense_Mutation p.G567S 0.35 deleterious(0) probably_damaging(1) TCGA-41-2571-01 19 7809880 7809880 C T CD209 Missense_Mutation p.A283T 0.25 deleterious(0.02) probably_damaging(0.954) TCGA-41-2571-01 1 158626392 158626392 T A SPTA1 Missense_Mutation p.S954C 0.31 deleterious(0) probably_damaging(0.975) TCGA-41-2571-01 1 160793477 160793477 A G LY9 Missense_Mutation p.D574G 0.17 deleterious(0) benign(0.002) TCGA-41-2571-01 1 179972355 179972355 G A CEP350 Silent p.V355V 0.45 TCGA-41-2571-01 1 184588881 184588881 A - C1orf21 3'UTR 0.57 TCGA-41-2571-01 1 19565777 19565777 G A EMC1 Missense_Mutation p.A325V 0.04 tolerated(0.31) benign(0.004) TCGA-41-2571-01 1 20470022 20470022 G A PLA2G2F Missense_Mutation p.V85M 0.32 tolerated(0.2) possibly_damaging(0.543) TCGA-41-2571-01 1 248457919 248457919 C T OR2T12 Silent p.%3D 0.26 TCGA-41-2571-01 20 10653470 10653470 C T JAG1 Missense_Mutation p.G89E 0.29 tolerated(1) possibly_damaging(0.614) TCGA-41-2571-01 20 15210608 15210608 A T MACROD2 Silent p.P147P 0.05 TCGA-41-2571-01 22 23974205 23974205 C T C22orf43 Silent p.G2G 0.41 TCGA-41-2571-01 22 30738319 30738319 C T SF3A1 Nonsense_Mutation p.W249* 0.44 TCGA-41-2571-01 22 45723798 45723798 C T FAM118A Missense_Mutation p.R126W 0.39 deleterious(0) benign(0.339) TCGA-41-2571-01 2 116599996 116599996 G T DPP10 3'Flank 0.25 TCGA-41-2571-01 2 167151220 167151220 G C SCN9A Intron 0.36 TCGA-41-2571-01 2 208986472 208986472 G C CRYGD Missense_Mutation p.D150E 0.25 tolerated(1) benign(0.001) TCGA-41-2571-01 2 45773870 45773870 C A SRBD1 Splice_Site p.X625_splice 0.39 TCGA-41-2571-01 3 111356983 111356983 G A CD96 Missense_Mutation p.G498E 0.34 tolerated(0.37) benign(0.018) TCGA-41-2571-01 3 148857895 148857895 A C HPS3 Missense_Mutation p.M108L 0.34 tolerated(0.5) possibly_damaging(0.455) TCGA-41-2571-01 3 194062087 194062087 G A CPN2 Missense_Mutation p.R449W 0.37 tolerated(0.09) benign(0.007) TCGA-41-2571-01 3 32995888 32995888 T A CCR4 Missense_Mutation p.L325H 0.39 tolerated(0.54) benign(0.155) TCGA-41-2571-01 3 53376299 53376299 C A DCP1A Splice_Site p.X59_splice 0.36 TCGA-41-2571-01 4 106317427 106317427 C T PPA2 Missense_Mutation p.C283Y 0.35 tolerated(0.08) probably_damaging(0.931) TCGA-41-2571-01 4 38798601 38798601 G A TLR1 Nonsense_Mutation p.Q618* 0.37 TCGA-41-2571-01 4 71250240 71250240 A T SMR3B Missense_Mutation p.T5S 0.33 tolerated_low_confidence(0.13) unknown(0) TCGA-41-2571-01 4 77288529 77288529 C T CCDC158 Missense_Mutation p.R583Q 0.40 tolerated(0.16) probably_damaging(0.975) TCGA-41-2571-01 5 140230509 140230509 T - PCDHA9 Intron 0.39 TCGA-41-2571-01 5 140763059 140763059 G A PCDHGA7 Missense_Mutation p.R198Q 0.37 tolerated_low_confidence(0.25) benign(0.025) TCGA-41-2571-01 6 109481832 109481832 C T CEP57L1 Silent p.D358D 0.56 TCGA-41-2571-01 6 170878836 170878836 G T TBP Missense_Mutation p.G272C 0.24 deleterious(0) possibly_damaging(0.562) TCGA-41-2571-01 6 30458930 30458930 C T HLA-E Silent p.H209H 0.39 TCGA-41-2571-01 6 56357035 56357035 C G DST Missense_Mutation p.R4293T 0.40 probably_damaging(0.999) TCGA-41-2571-01 6 70878104 70878104 T A COL19A1 Silent p.P846P 0.43 TCGA-41-2571-01 7 113558904 113558904 C T PPP1R3A Missense_Mutation p.E50K 0.18 deleterious(0) probably_damaging(0.99) TCGA-41-2571-01 7 117864828 117864828 C T ANKRD7 5'UTR 0.22 TCGA-41-2571-01 7 139655361 139655361 C T TBXAS1 Missense_Mutation p.R262C 0.18 deleterious(0.03) benign(0.081) TCGA-41-2571-01 7 47698751 47698751 G T C7orf65 Missense_Mutation p.K127N 0.17 deleterious_low_confidence(0) possibly_damaging(0.607) TCGA-41-2571-01 7 73818187 73818187 G C CLIP2 3'UTR 0.17 TCGA-41-2571-01 7 76653004 76653004 A G UPK3B 3'Flank 0.22 TCGA-41-2571-01 8 72965067 72965067 A G RP11-383H13.1 3'UTR 0.34 TCGA-41-2571-01 8 86240698 86240698 T G CA1 3'UTR 0.52 TCGA-41-2571-01 9 732407 732407 G T KANK1 Missense_Mutation p.S1012I 0.32 deleterious(0) possibly_damaging(0.781) TCGA-41-2572-01 11 64807273 64807273 G A SNX15 3'UTR 0.12 TCGA-41-2572-01 11 72945627 72945627 C T P2RY2 Silent p.S141S 0.36 TCGA-41-2572-01 12 100717360 100717360 A C SCYL2 Missense_Mutation p.K485Q 0.29 deleterious(0) possibly_damaging(0.847) TCGA-41-2572-01 12 101520784 101520784 G A ANO4 Missense_Mutation p.R900H 0.36 tolerated(0.46) benign(0.008) TCGA-41-2572-01 12 1749108 1749108 T C WNT5B Missense_Mutation p.L196P 0.06 deleterious(0.01) benign(0.047) TCGA-41-2572-01 12 32791721 32791722 - C FGD4 Frame_Shift_Ins p.Q681Pfs*18 0.30 TCGA-41-2572-01 12 48921845 48921845 G A OR8S1 Missense_Mutation p.A347T 0.50 possibly_damaging(0.499) TCGA-41-2572-01 14 22946729 22946729 G C TRAJ58 Missense_Mutation p.G12A 0.42 unknown(0) TCGA-41-2572-01 15 25349777 25349777 A G SNORD116-30 5'Flank 0.46 TCGA-41-2572-01 15 33916210 33916210 G A RYR3 Missense_Mutation p.V854I 0.39 benign(0.037) TCGA-41-2572-01 16 67477041 67477041 G A ATP6V0D1 Silent p.D174D 0.39 TCGA-41-2572-01 16 70908762 70908762 C T HYDIN Missense_Mutation p.A3540T 0.39 benign(0.001) TCGA-41-2572-01 16 70916649 70916649 G A HYDIN Missense_Mutation p.R3377C 0.24 benign(0) TCGA-41-2572-01 17 10408543 10408543 C T MYH1 Missense_Mutation p.R791Q 0.39 tolerated(0.12) benign(0.252) TCGA-41-2572-01 17 1936713 1936713 G A DPH1 Intron 0.08 TCGA-41-2572-01 17 20931977 20931977 C T USP22 Missense_Mutation p.C61Y 0.41 deleterious(0.01) possibly_damaging(0.474) TCGA-41-2572-01 17 32598863 32598863 C A CCL7 3'UTR 0.10 TCGA-41-2572-01 18 61465969 61465969 A G SERPINB7 Missense_Mutation p.K196E 0.42 tolerated(0.07) benign(0.403) TCGA-41-2572-01 18 7034562 7034562 C T LAMA1 Missense_Mutation p.R656H 0.40 deleterious(0) probably_damaging(0.999) TCGA-41-2572-01 19 14513618 14513618 G A CD97 Missense_Mutation p.A465T 0.33 tolerated(1) benign(0.015) TCGA-41-2572-01 19 16301334 16301334 A G FAM32A Missense_Mutation p.M74V 0.34 tolerated(0.21) benign(0.006) TCGA-41-2572-01 19 35832290 35832290 G A CD22 Missense_Mutation p.E518K 0.34 deleterious(0.02) benign(0.066) TCGA-41-2572-01 19 51295361 51295361 G A ACPT Missense_Mutation p.R161Q 0.20 deleterious(0.02) probably_damaging(0.974) TCGA-41-2572-01 19 53794413 53794413 G A BIRC8 5'UTR 0.37 TCGA-41-2572-01 19 54784355 54784355 G A LILRB2 5'UTR 0.22 TCGA-41-2572-01 19 55776732 55776732 C T HSPBP1 Missense_Mutation p.V307M 0.30 tolerated(0.08) benign(0.003) TCGA-41-2572-01 19 55777302 55777302 C T HSPBP1 Missense_Mutation p.R282Q 0.28 tolerated(0.36) benign(0.004) TCGA-41-2572-01 19 746493 746493 C T PALM Silent p.G281G 0.17 TCGA-41-2572-01 1 120437661 120437661 C A ADAM30 Missense_Mutation p.L433F 0.32 tolerated(0.35) benign(0.364) TCGA-41-2572-01 1 156126258 156126258 G C SEMA4A Missense_Mutation p.D65H 0.35 deleterious(0.01) probably_damaging(0.996) TCGA-41-2572-01 1 198676014 198676014 G A PTPRC Silent p.A279A 0.45 TCGA-41-2572-01 1 24465095 24465095 C T IL22RA1 Silent p.T51T 0.29 TCGA-41-2572-01 1 247835982 247835982 A C OR13G1 Missense_Mutation p.V121G 0.38 deleterious(0) benign(0.36) TCGA-41-2572-01 1 53995480 53995480 C T GLIS1 Missense_Mutation p.R314H 0.37 deleterious(0) probably_damaging(0.991) TCGA-41-2572-01 20 42331498 42331498 G A MYBL2 Silent p.T440T 0.28 TCGA-41-2572-01 22 17072504 17072504 C T CCT8L2 Missense_Mutation p.V313M 0.38 tolerated(1) benign(0.002) TCGA-41-2572-01 22 36003250 36003250 A G MB 3'UTR 0.40 TCGA-41-2572-01 2 155099239 155099239 C T GALNT13 Silent p.Y169Y 0.28 TCGA-41-2572-01 2 168105145 168105145 A G XIRP2 Missense_Mutation p.K2415E 0.44 probably_damaging(0.99) TCGA-41-2572-01 2 179398164 179398164 G A TTN Missense_Mutation p.T34393I 0.31 TCGA-41-2572-01 2 24435600 24435600 C T ITSN2 Silent p.P1336P 0.34 TCGA-41-2572-01 2 89185565 89185565 C T IGKV4-1 Nonsense_Mutation p.R87* 0.45 TCGA-41-2572-01 2 96587529 96587529 C G ANKRD36C Splice_Site 0.10 TCGA-41-2572-01 3 113684122 113684122 C T ZDHHC23 3'Flank 0.33 TCGA-41-2572-01 3 13659763 13659763 C T FBLN2 Silent p.D639D 0.43 TCGA-41-2572-01 3 178952085 178952085 A G PIK3CA Missense_Mutation p.H1047R 0.43 tolerated(0.11) possibly_damaging(0.529) TCGA-41-2572-01 3 27758496 27758496 C A EOMES 3'UTR 0.31 TCGA-41-2572-01 3 38812783 38812783 C T SCN10A Missense_Mutation p.V196I 0.38 tolerated(0.1) probably_damaging(0.927) TCGA-41-2572-01 3 49395545 49395545 T G GPX1 Missense_Mutation p.Y56S 0.24 tolerated(0.06) benign(0.232) TCGA-41-2572-01 4 106155901 106155901 T G TET2 Missense_Mutation p.S268A 0.36 tolerated(0.1) benign(0.025) TCGA-41-2572-01 4 11401289 11401289 T C HS3ST1 Missense_Mutation p.Q114R 0.38 deleterious(0.02) possibly_damaging(0.89) TCGA-41-2572-01 4 185681554 185681554 C G ACSL1 Missense_Mutation p.S580T 0.42 deleterious(0) possibly_damaging(0.68) TCGA-41-2572-01 4 3251162 3251162 C T MSANTD1 Silent p.N71N 0.38 TCGA-41-2572-01 5 140720212 140720212 C T PCDHGA2 Silent p.N558N 0.46 TCGA-41-2572-01 5 31508865 31508865 C T DROSHA Missense_Mutation p.E484K 0.38 tolerated(0.64) benign(0.145) TCGA-41-2572-01 5 68411085 68411085 C G SLC30A5 Missense_Mutation p.L212V 0.09 tolerated(0.32) benign(0.008) TCGA-41-2572-01 6 133004205 133004205 C A VNN1 3'UTR 0.79 TCGA-41-2572-01 6 30153775 30153775 C A TRIM26 Missense_Mutation p.V500L 0.06 deleterious(0) unknown(0) TCGA-41-2572-01 6 33036842 33036842 G A HLA-DPA1 Silent p.C194C 0.36 TCGA-41-2572-01 6 54805390 54805390 C T FAM83B Missense_Mutation p.R541C 0.38 deleterious(0) probably_damaging(1) TCGA-41-2572-01 6 57498985 57498985 G C PRIM2 3'UTR 0.16 TCGA-41-2572-01 7 127732120 127732120 C T SND1 3'UTR 0.26 TCGA-41-2572-01 7 128843306 128843306 G A SMO Missense_Mutation p.R138Q 0.11 tolerated(0.65) benign(0.022) TCGA-41-2572-01 7 142639595 142639595 G A KEL Missense_Mutation p.R655W 0.14 tolerated(0.17) benign(0.001) TCGA-41-2572-01 7 143956122 143956122 G A OR2A7 Silent p.A200A 0.13 TCGA-41-2572-01 7 150835302 150835302 C T AGAP3 Missense_Mutation p.P523L 0.07 tolerated(0.15) benign(0.04) TCGA-41-2572-01 7 17375305 17375305 G A AHR Missense_Mutation p.R352Q 0.28 deleterious(0) probably_damaging(1) TCGA-41-2572-01 7 1786648 1786648 T C ELFN1 Missense_Mutation p.F806L 0.20 deleterious(0) probably_damaging(0.984) TCGA-41-2572-01 7 36571798 36571798 G A AOAH Silent p.H460H 0.30 TCGA-41-2572-01 7 98445592 98445592 C T TMEM130 3'UTR 0.19 TCGA-41-2572-01 8 11706616 11706616 C T CTSB Missense_Mutation p.V129I 0.39 tolerated(0.33) benign(0) TCGA-41-2572-01 8 94713461 94713461 A G FAM92A1 Silent p.Q12Q 0.36 TCGA-41-2572-01 9 35561054 35561054 C G RUSC2 Missense_Mutation p.Q1437E 0.07 tolerated(0.95) benign(0.002) TCGA-41-2572-01 X 114248418 114248418 G A IL13RA2 Silent p.C145C 0.73 TCGA-41-2572-01 X 1584669 1584669 G A P2RY8 Silent p.I261I 0.38 TCGA-41-2572-01 X 54986328 54986328 T C PFKFB1 Splice_Site p.X106_splice 0.09 TCGA-41-2572-01 X 75003210 75003210 C T MAGEE2 3'UTR 0.10 TCGA-41-2573-01 10 89692800 89692800 C T PTEN Missense_Mutation p.P95L 0.64 deleterious(0) possibly_damaging(0.904) TCGA-41-2573-01 11 22399231 22399231 T C SLC17A6 Missense_Mutation p.V565A 0.55 tolerated(0.12) benign(0.003) TCGA-41-2573-01 11 4661911 4661911 T A OR51D1 Silent p.P297P 0.40 TCGA-41-2573-01 11 4904034 4904034 G A OR51T1 Missense_Mutation p.R329H 0.28 deleterious(0.04) benign(0.051) TCGA-41-2573-01 11 55322570 55322570 A T OR4C15 Missense_Mutation p.N263I 0.32 tolerated_low_confidence(0.79) benign(0.004) TCGA-41-2573-01 11 608268 608268 C T PHRF1 Missense_Mutation p.P937S 0.44 tolerated(0.61) benign(0.015) TCGA-41-2573-01 12 133240644 133240644 C A POLE Missense_Mutation p.K884N 0.05 deleterious(0.02) possibly_damaging(0.678) TCGA-41-2573-01 12 133732883 133732883 T C ZNF10 Missense_Mutation p.C351R 0.23 deleterious(0) probably_damaging(0.97) TCGA-41-2573-01 12 32908585 32908585 G C YARS2 Missense_Mutation p.T75S 0.46 tolerated(0.41) benign(0.067) TCGA-41-2573-01 12 39079420 39079420 C A CPNE8 Splice_Site p.X382_splice 0.23 TCGA-41-2573-01 12 6138532 6138532 G A VWF Silent p.S981S 0.37 TCGA-41-2573-01 12 85695101 85695101 C T ALX1 Missense_Mutation p.L277F 0.20 tolerated(0.09) probably_damaging(0.975) TCGA-41-2573-01 12 9225468 9225468 C A A2M Splice_Site p.X1253_splice 0.20 TCGA-41-2573-01 15 25444666 25444666 C T SNORD115-16 RNA 0.33 TCGA-41-2573-01 15 33822868 33822868 G A RYR3 Splice_Site p.X118_splice 0.21 TCGA-41-2573-01 16 4731741 4731741 G A MGRN1 Missense_Mutation p.R441H 0.33 tolerated(0.31) benign(0) TCGA-41-2573-01 16 67472549 67472549 C T ATP6V0D1 Missense_Mutation p.G313D 0.30 deleterious(0) possibly_damaging(0.787) TCGA-41-2573-01 16 74750318 74750318 C T FA2H Silent p.S322S 0.12 TCGA-41-2573-01 17 10412802 10412802 C T MYH1 Silent p.K529K 0.67 TCGA-41-2573-01 17 5042870 5042870 T A USP6 Missense_Mutation p.W467R 0.68 deleterious_low_confidence(0) possibly_damaging(0.608) TCGA-41-2573-01 17 58725371 58725371 A T PPM1D Silent p.G315G 0.50 TCGA-41-2573-01 18 28935373 28935373 A T DSG1 3'UTR 0.20 TCGA-41-2573-01 1 118067692 118067692 G A MAN1A2 3'UTR 0.57 TCGA-41-2573-01 1 12854536 12854536 C T PRAMEF1 Missense_Mutation p.R254W 0.42 deleterious(0) benign(0) TCGA-41-2573-01 1 186863259 186863259 G A PLA2G4A Missense_Mutation p.M98I 0.46 tolerated(0.52) benign(0.005) TCGA-41-2573-01 1 237632425 237632425 C G RYR2 Missense_Mutation p.A549G 0.17 benign(0.015) TCGA-41-2573-01 1 75708631 75708631 T A SLC44A5 Missense_Mutation p.K137N 0.23 tolerated(0.56) benign(0.002) TCGA-41-2573-01 20 34022173 34022173 C T GDF5 Missense_Mutation p.R347H 0.14 deleterious(0.05) benign(0.022) TCGA-41-2573-01 20 60900398 60900398 C T LAMA5 Missense_Mutation p.A1835T 0.13 benign(0.13) TCGA-41-2573-01 2 109124124 109124124 C T GCC2 3'UTR 0.25 TCGA-41-2573-01 2 192288775 192288775 G C MYO1B 3'UTR 0.15 TCGA-41-2573-01 2 31588885 31588885 G A XDH Missense_Mutation p.R805W 0.42 deleterious(0) probably_damaging(0.999) TCGA-41-2573-01 2 69472748 69472748 C T ANTXR1 3'UTR 0.06 TCGA-41-2573-01 2 74747143 74747143 C T DQX1 Missense_Mutation p.R505H 0.19 tolerated(0.47) benign(0.004) TCGA-41-2573-01 3 121351248 121351248 C T HCLS1 Missense_Mutation p.D391N 0.70 tolerated(0.39) possibly_damaging(0.539) TCGA-41-2573-01 3 156763431 156763431 C T LEKR1 Silent p.G657G 0.70 TCGA-41-2573-01 3 49064276 49064276 G A IMPDH2 Silent p.I221I 0.74 TCGA-41-2573-01 4 141074511 141074511 A T MAML3 5'UTR 0.28 TCGA-41-2573-01 4 69795704 69795704 C A UGT2A3 Missense_Mutation p.A471S 0.45 deleterious(0) probably_damaging(0.991) TCGA-41-2573-01 5 121187869 121187869 A G FTMT Missense_Mutation p.N71D 0.31 deleterious(0.04) benign(0.374) TCGA-41-2573-01 5 169805757 169805757 G A KCNMB1 Missense_Mutation p.A176V 0.18 tolerated(0.96) benign(0.032) TCGA-41-2573-01 5 53751481 53751481 T G HSPB3 5'UTR 0.09 TCGA-41-2573-01 5 56179395 56179395 G A MAP3K1 Silent p.P1236P 0.39 TCGA-41-2573-01 5 89985863 89985863 G C GPR98 Missense_Mutation p.E2226Q 0.15 possibly_damaging(0.727) TCGA-41-2573-01 6 130762228 130762228 C T TMEM200A Nonsense_Mutation p.R221* 0.30 TCGA-41-2573-01 6 29455047 29455047 G A MAS1L Silent p.F211F 0.41 TCGA-41-2573-01 6 7581800 7581800 G A DSP Missense_Mutation p.E1793K 0.27 benign(0.299) TCGA-41-2573-01 6 90360511 90360511 G A MDN1 Missense_Mutation p.S5324L 0.50 unknown(0) TCGA-41-2573-01 7 134254273 134254273 G A AKR1B15 Missense_Mutation p.G143R 0.08 deleterious(0.04) benign(0.369) TCGA-41-2573-01 7 138794019 138794019 C T ZC3HAV1 Missense_Mutation p.R20H 0.07 deleterious(0) probably_damaging(0.964) TCGA-41-2573-01 7 142459677 142459677 G A PRSS1 Missense_Mutation p.E85K 0.32 deleterious(0) probably_damaging(0.942) TCGA-41-2573-01 7 63538251 63538252 - G ZNF727 Frame_Shift_Ins p.R276Efs*12 0.26 TCGA-41-2573-01 7 76033672 76033672 G A SRCRB4D Missense_Mutation p.P29S 0.40 tolerated_low_confidence(0.19) benign(0.002) TCGA-41-2573-01 8 144808347 144808347 C T FAM83H Missense_Mutation p.R1095H 0.39 tolerated(0.08) benign(0.064) TCGA-41-2573-01 8 145661200 145661200 G A TONSL Silent p.P872P 0.30 TCGA-41-2573-01 8 42220141 42220141 A G POLB Silent p.L211L 0.39 TCGA-41-2573-01 9 123912528 123912528 T C CNTRL Missense_Mutation p.Y1244H 0.04 possibly_damaging(0.862) TCGA-41-2573-01 9 137591840 137591840 C T COL5A1 Silent p.N121N 0.44 TCGA-41-2573-01 9 138586241 138586241 G A SOHLH1 Missense_Mutation p.S313L 0.56 deleterious(0.05) benign(0.005) TCGA-41-2573-01 X 36163083 36163083 C G CHDC2 3'UTR 0.93 TCGA-41-2573-01 X 43626754 43626754 C A MAOB Missense_Mutation p.G508C 0.07 tolerated(0.2) benign(0.007) TCGA-41-2575-01 10 43597850 43597850 G A RET Missense_Mutation p.R133H 0.08 tolerated_low_confidence(0.07) possibly_damaging(0.579) TCGA-41-2575-01 10 51225349 51225349 G A AGAP8 Missense_Mutation p.R545C 0.83 deleterious(0.02) benign(0.022) TCGA-41-2575-01 10 61022289 61022289 G C FAM13C Missense_Mutation p.P381A 0.68 tolerated(0.33) benign(0.015) TCGA-41-2575-01 11 18231799 18231799 C T RP11-113D6.10 3'UTR 0.32 TCGA-41-2575-01 11 494709 494709 G A RNH1 Silent p.S456S 0.44 TCGA-41-2575-01 11 56756567 56756567 A G OR5AK2 Missense_Mutation p.Y60C 0.38 deleterious(0) probably_damaging(1) TCGA-41-2575-01 11 66062169 66062169 G A TMEM151A Nonsense_Mutation p.W151* 0.43 TCGA-41-2575-01 11 66618277 66618277 C A PC Missense_Mutation p.A781S 0.49 tolerated(0.11) possibly_damaging(0.614) TCGA-41-2575-01 12 47163207 47163207 C T SLC38A4 Missense_Mutation p.R435H 0.42 deleterious(0.02) probably_damaging(0.998) TCGA-41-2575-01 12 53689280 53689280 C T PFDN5 5'UTR 0.50 TCGA-41-2575-01 12 98850560 98850560 C T SLC9A7P1 RNA 0.44 TCGA-41-2575-01 13 67802278 67802279 CA - PCDH9 Frame_Shift_Del p.A99Wfs*6 0.34 TCGA-41-2575-01 13 99061722 99061722 G A FARP1 Silent p.P515P 0.41 TCGA-41-2575-01 14 23444297 23444297 C T AJUBA Missense_Mutation p.G419E 0.79 deleterious(0) possibly_damaging(0.633) TCGA-41-2575-01 14 63316419 63316419 A T KCNH5 Missense_Mutation p.D507E 0.62 tolerated(0.24) possibly_damaging(0.656) TCGA-41-2575-01 15 100591784 100591784 G A ADAMTS17 Silent p.C816C 0.41 TCGA-41-2575-01 15 79059849 79059849 C T ADAMTS7 Missense_Mutation p.V911M 0.47 tolerated(0.11) benign(0.104) TCGA-41-2575-01 17 1303395 1303395 G A YWHAE Nonsense_Mutation p.R4* 0.36 TCGA-41-2575-01 17 56432270 56432270 A G RNF43 3'UTR 0.42 TCGA-41-2575-01 17 61950623 61950623 G A CSH2 Silent p.T29T 0.22 TCGA-41-2575-01 17 65888098 65888098 A T BPTF Missense_Mutation p.Q668L 0.51 probably_damaging(0.92) TCGA-41-2575-01 17 67077247 67077247 G A ABCA6 Silent p.D1552D 0.42 TCGA-41-2575-01 17 7194458 7194458 A G YBX2 Missense_Mutation p.V138A 0.44 deleterious(0) benign(0.418) TCGA-41-2575-01 17 7577609 7577609 C G TP53 Splice_Site p.X225_splice 0.58 TCGA-41-2575-01 17 9546402 9546402 G T WDR16 Missense_Mutation p.V584L 0.30 tolerated(0.22) benign(0.014) TCGA-41-2575-01 18 61323102 61323102 C T SERPINB3 Missense_Mutation p.R321H 0.58 tolerated(0.16) benign(0.003) TCGA-41-2575-01 19 11453778 11453778 T G TMEM205 Missense_Mutation p.S95R 0.37 deleterious(0.02) possibly_damaging(0.736) TCGA-41-2575-01 19 36210728 36210728 C A KMT2B Missense_Mutation p.P160H 0.40 unknown(0) TCGA-41-2575-01 19 44030595 44030595 C A ETHE1 Intron 0.19 TCGA-41-2575-01 19 54848149 54848149 C G LILRA4 Silent p.L406L 0.58 TCGA-41-2575-01 19 57646590 57646590 A T ZIM3 Missense_Mutation p.F372Y 0.64 deleterious(0) probably_damaging(0.99) TCGA-41-2575-01 19 6828653 6828653 C T VAV1 Silent p.N371N 0.39 TCGA-41-2575-01 1 10436667 10436667 A T KIF1B 3'UTR 0.66 TCGA-41-2575-01 1 12837263 12837263 G C PRAMEF12 Missense_Mutation p.D325H 0.44 tolerated(0.15) probably_damaging(0.996) TCGA-41-2575-01 1 152279195 152279195 A G FLG Missense_Mutation p.S2723P 0.18 possibly_damaging(0.524) TCGA-41-2575-01 1 152282534 152282534 G A FLG Missense_Mutation p.R1610W 0.49 possibly_damaging(0.689) TCGA-41-2575-01 1 207318107 207318107 C A C4BPA 3'UTR 0.40 TCGA-41-2575-01 1 237780610 237780610 T C RYR2 Missense_Mutation p.C1914R 0.55 probably_damaging(0.999) TCGA-41-2575-01 1 3699235 3699235 T C LRRC47 Missense_Mutation p.E468G 0.05 deleterious(0) possibly_damaging(0.861) TCGA-41-2575-01 1 38464646 38464646 C T FHL3 Missense_Mutation p.G111R 0.27 deleterious(0) probably_damaging(0.977) TCGA-41-2575-01 1 42621411 42621411 T G GUCA2B 3'UTR 0.31 TCGA-41-2575-01 1 54605733 54605733 G A CDCP2 Silent p.S270S 0.38 TCGA-41-2575-01 1 84962001 84962001 T C RPF1 Missense_Mutation p.L319P 0.44 deleterious(0) probably_damaging(0.999) TCGA-41-2575-01 20 43836974 43836974 A G SEMG1 Missense_Mutation p.I346V 0.06 tolerated(0.18) benign(0.035) TCGA-41-2575-01 21 43846877 43846877 G A UBASH3A Missense_Mutation p.G373E 0.33 tolerated(0.16) benign(0.072) TCGA-41-2575-01 22 40364194 40364194 A C GRAP2 Missense_Mutation p.Q203P 0.12 tolerated(0.36) benign(0) TCGA-41-2575-01 2 111144855 111144855 C A LINC01106 5'Flank 0.25 TCGA-41-2575-01 2 138421119 138421119 G T THSD7B Missense_Mutation p.G1545V 0.50 deleterious(0.01) unknown(0) TCGA-41-2575-01 2 165996030 165996030 T C SCN3A Missense_Mutation p.Q703R 0.41 tolerated(0.11) benign(0.215) TCGA-41-2575-01 2 179610349 179610349 C A TTN Intron 0.40 TCGA-41-2575-01 2 183597246 183597246 C T DNAJC10 Nonsense_Mutation p.R276* 0.40 TCGA-41-2575-01 2 198415097 198415097 T C HSPE1-MOB4 Missense_Mutation p.F214S 0.44 deleterious(0) probably_damaging(0.988) TCGA-41-2575-01 2 198950332 198950332 G A PLCL1 Silent p.P697P 0.41 TCGA-41-2575-01 2 207174816 207174816 T G ZDBF2 Missense_Mutation p.F1855C 0.51 deleterious(0) possibly_damaging(0.759) TCGA-41-2575-01 2 27263616 27263616 A T TMEM214 Missense_Mutation p.S661C 0.33 tolerated(0.12) probably_damaging(0.993) TCGA-41-2575-01 3 112993495 112993495 C T BOC Missense_Mutation p.A503V 0.36 tolerated(0.16) benign(0.056) TCGA-41-2575-01 3 114057818 114057818 T A ZBTB20 3'UTR 0.50 TCGA-41-2575-01 3 121981197 121981197 C A CASR Missense_Mutation p.P439T 0.42 tolerated(0.08) probably_damaging(0.984) TCGA-41-2575-01 3 13679178 13679178 G A FBLN2 Missense_Mutation p.R1152H 0.49 deleterious(0.01) probably_damaging(1) TCGA-41-2575-01 3 186362631 186362631 C T FETUB Silent p.T172T 0.22 TCGA-41-2575-01 3 68782249 68782249 G A FAM19A4 3'UTR 0.52 TCGA-41-2575-01 4 17819684 17819684 C T NCAPG Missense_Mutation p.P364L 0.16 tolerated(0.44) benign(0.003) TCGA-41-2575-01 4 54424092 54424092 G A LNX1 Intron 0.19 TCGA-41-2575-01 4 71508380 71508380 G T ENAM Missense_Mutation p.V413L 0.03 tolerated(0.73) benign(0.007) TCGA-41-2575-01 5 140724302 140724302 T G PCDHGA3 Missense_Mutation p.D234E 0.45 deleterious_low_confidence(0) probably_damaging(1) TCGA-41-2575-01 5 179390508 179390508 T G RNF130 Missense_Mutation p.M403L 0.49 deleterious_low_confidence(0.03) benign(0.017) TCGA-41-2575-01 5 180625194 180625194 T A TRIM7 Missense_Mutation p.K338I 0.14 deleterious(0.05) possibly_damaging(0.643) TCGA-41-2575-01 5 41009468 41009468 C G MROH2B Missense_Mutation p.A1112P 0.47 tolerated(0.08) benign(0.062) TCGA-41-2575-01 6 151789913 151789913 A C C6orf211 Missense_Mutation p.N332H 0.04 deleterious(0.02) benign(0.058) TCGA-41-2575-01 6 38805720 38805720 C A DNAH8 Silent p.A1239A 0.34 TCGA-41-2575-01 6 62995856 62995856 C T KHDRBS2 5'UTR 0.36 TCGA-41-2575-01 7 100017408 100017408 C A ZCWPW1 Missense_Mutation p.G43W 0.44 deleterious(0) probably_damaging(0.997) TCGA-41-2575-01 7 42977023 42977023 C T MRPL32 Nonsense_Mutation p.R139* 0.26 TCGA-41-2575-01 7 45016575 45016575 G C MYO1G Missense_Mutation p.A64G 0.22 tolerated(0.09) possibly_damaging(0.559) TCGA-41-2575-01 7 90895152 90895152 G A FZD1 Silent p.S319S 0.29 TCGA-41-2575-01 8 102649132 102649132 A G GRHL2 Missense_Mutation p.Y498C 0.50 tolerated(0.17) benign(0.353) TCGA-41-2575-01 8 144996426 144996426 C T PLEC Silent p.Q2658Q 0.46 TCGA-41-2575-01 8 23060271 23060271 G C TNFRSF10A Missense_Mutation p.S136C 0.38 tolerated(0.18) possibly_damaging(0.865) TCGA-41-2575-01 8 36766969 36766969 G T KCNU1 Missense_Mutation p.K749N 0.29 deleterious(0) probably_damaging(0.989) TCGA-41-2575-01 8 52339264 52339264 T G PXDNL Missense_Mutation p.N527T 0.50 tolerated(0.82) benign(0.088) TCGA-41-2575-01 8 59345800 59345800 G T UBXN2B Missense_Mutation p.D141Y 0.44 deleterious(0) probably_damaging(0.935) TCGA-41-2575-01 8 86047170 86047170 C T LRRCC1 Missense_Mutation p.S686F 0.49 deleterious(0.01) possibly_damaging(0.862) TCGA-41-2575-01 9 70177706 70177706 G A FOXD4L5 Missense_Mutation p.P93L 0.34 deleterious_low_confidence(0.02) probably_damaging(0.982) TCGA-41-2575-01 9 84562691 84562691 T A RP11-383M4.6 Intron 0.27 TCGA-41-2575-01 X 24075581 24075581 A T EIF2S3 Missense_Mutation p.K59N 0.85 deleterious(0) possibly_damaging(0.728) TCGA-41-3392-01 10 100249866 100249866 G T HPSE2 Missense_Mutation p.P470T 0.21 tolerated(0.07) probably_damaging(0.998) TCGA-41-3392-01 10 1263025 1263025 G A ADARB2 Silent p.R516R 0.75 TCGA-41-3392-01 11 49598411 49598411 T A RP11-707M1.1 RNA 0.10 TCGA-41-3392-01 11 57003305 57003305 G A APLNR 3'UTR 0.44 TCGA-41-3392-01 11 58126152 58126152 T C OR5B17 Missense_Mutation p.T131A 0.32 tolerated_low_confidence(0.2) benign(0.139) TCGA-41-3392-01 11 60786743 60786743 C G CD6 Missense_Mutation p.P654A 0.32 tolerated(0.07) benign(0.024) TCGA-41-3392-01 12 112620944 112620944 C G HECTD4 Missense_Mutation p.V3490L 0.35 benign(0.317) TCGA-41-3392-01 12 54117525 54117525 C T CALCOCO1 Missense_Mutation p.R101Q 0.39 tolerated(0.06) probably_damaging(0.981) TCGA-41-3392-01 12 54369092 54369092 C T HOXC11 Silent p.N270N 0.35 TCGA-41-3392-01 12 55945591 55945591 A G OR6C4 Missense_Mutation p.E194G 0.35 deleterious_low_confidence(0) possibly_damaging(0.657) TCGA-41-3392-01 12 58020574 58020574 G A B4GALNT1 Missense_Mutation p.R519W 0.38 deleterious(0.02) possibly_damaging(0.846) TCGA-41-3392-01 12 76424413 76424413 G A PHLDA1 Missense_Mutation p.P370L 0.50 tolerated_low_confidence(1) unknown(0) TCGA-41-3392-01 13 100425263 100425263 A C CLYBL Missense_Mutation p.K83T 0.57 deleterious(0) probably_damaging(0.99) TCGA-41-3392-01 14 106054474 106054474 C T IGHA2 Missense_Mutation p.V87M 0.49 deleterious(0) probably_damaging(0.999) TCGA-41-3392-01 14 106174744 106174744 C T IGHA1 Missense_Mutation p.V87M 0.12 deleterious(0) probably_damaging(0.999) TCGA-41-3392-01 14 20665689 20665689 C G OR11G2 Silent p.L65L 0.22 TCGA-41-3392-01 14 70989515 70989515 A T ADAM20 Missense_Mutation p.C704S 0.32 deleterious(0) probably_damaging(0.998) TCGA-41-3392-01 14 74058995 74058995 G A ACOT4 Missense_Mutation p.G111D 0.19 tolerated(0.05) possibly_damaging(0.861) TCGA-41-3392-01 15 28514552 28514553 - C HERC2 Frame_Shift_Ins p.L430Vfs*49 0.46 TCGA-41-3392-01 15 79296158 79296158 G A RASGRF1 Missense_Mutation p.A828V 0.51 tolerated(0.55) benign(0.002) TCGA-41-3392-01 16 71689260 71689260 C T PHLPP2 Missense_Mutation p.R823Q 0.49 deleterious(0.01) possibly_damaging(0.623) TCGA-41-3392-01 16 84494166 84494166 C T ATP2C2 Intron 0.46 TCGA-41-3392-01 16 89256722 89256722 G A CDH15 Silent p.A350A 0.41 TCGA-41-3392-01 17 29550520 29550543 ACAGAAATTCTCAAGTGGTTGCGG - NF1 In_Frame_Del p.T594_R601del 0.14 TCGA-41-3392-01 17 79080620 79080620 C T BAIAP2 Silent p.Y471Y 0.43 TCGA-41-3392-01 18 55230200 55230200 T C FECH Missense_Mutation p.N210S 0.30 deleterious(0.01) probably_damaging(0.948) TCGA-41-3392-01 18 74635065 74635065 G A ZNF236 Missense_Mutation p.C1197Y 0.08 deleterious(0) possibly_damaging(0.857) TCGA-41-3392-01 19 15728930 15728930 C T AD000091.2 5'Flank 0.42 TCGA-41-3392-01 19 4511216 4511216 G T PLIN4 Missense_Mutation p.T905N 0.34 deleterious(0) probably_damaging(0.935) TCGA-41-3392-01 19 49573469 49573469 C T KCNA7 Missense_Mutation p.E408K 0.30 tolerated(0.05) possibly_damaging(0.57) TCGA-41-3392-01 19 49994303 49994303 C T RPL13A Missense_Mutation p.R117W 0.10 deleterious(0.02) benign(0.222) TCGA-41-3392-01 19 54627985 54627985 C T PRPF31 Missense_Mutation p.P269S 0.09 deleterious(0.05) probably_damaging(0.989) TCGA-41-3392-01 19 55603589 55603589 C G PPP1R12C Splice_Site p.X720_splice 0.18 TCGA-41-3392-01 1 10221285 10221285 C T UBE4B Nonsense_Mutation p.R1047* 0.30 TCGA-41-3392-01 1 12837817 12837817 T C PRAMEF12 3'UTR 0.18 TCGA-41-3392-01 1 147380211 147380211 C T GJA8 Silent p.F43F 0.50 TCGA-41-3392-01 1 152278815 152278815 G A FLG Silent p.D2849D 0.18 TCGA-41-3392-01 1 160771693 160771693 G A LY9 Intron 0.48 TCGA-41-3392-01 1 201047093 201047093 G T CACNA1S Silent p.I511I 0.28 TCGA-41-3392-01 1 204129738 204129738 G A REN Missense_Mutation p.R148C 0.34 deleterious(0.02) benign(0.394) TCGA-41-3392-01 1 206760184 206760184 T G RASSF5 Silent p.L377L 0.19 TCGA-41-3392-01 1 209963984 209963984 C T IRF6 Missense_Mutation p.V306I 0.41 tolerated(0.69) benign(0.062) TCGA-41-3392-01 1 248458187 248458187 G A OR2T12 Missense_Mutation p.R232C 0.51 tolerated(0.05) benign(0.075) TCGA-41-3392-01 1 45810415 45810415 C T TESK2 3'UTR 0.50 TCGA-41-3392-01 1 68697988 68697988 C T WLS 5'UTR 0.05 TCGA-41-3392-01 20 41100999 41100999 G A PTPRT Missense_Mutation p.R453C 0.41 deleterious(0.04) probably_damaging(0.976) TCGA-41-3392-01 20 45204315 45204315 G C SLC13A3 Missense_Mutation p.T410R 0.73 tolerated(0.33) benign(0.049) TCGA-41-3392-01 21 45959481 45959481 C T KRTAP10-1 Missense_Mutation p.V185M 0.33 tolerated(0.06) unknown(0) TCGA-41-3392-01 22 24439394 24439394 A G CABIN1 Missense_Mutation p.N125S 0.46 tolerated(0.18) benign(0.033) TCGA-41-3392-01 2 152580858 152580858 C T NEB Nonsense_Mutation p.W176* 0.31 TCGA-41-3392-01 2 15615941 15615941 G A NBAS Missense_Mutation p.A404V 0.09 tolerated(0.06) probably_damaging(0.998) TCGA-41-3392-01 2 179610717 179610717 C T TTN Intron 0.05 TCGA-41-3392-01 2 228476292 228476292 T A C2orf83 Missense_Mutation p.I91F 0.10 deleterious_low_confidence(0.03) unknown(0) TCGA-41-3392-01 2 68358402 68358402 C G WDR92 Missense_Mutation p.V348L 0.09 tolerated(0.09) benign(0.04) TCGA-41-3392-01 2 74710499 74710499 C T TTC31 Missense_Mutation p.L31F 0.24 tolerated_low_confidence(0.13) probably_damaging(0.916) TCGA-41-3392-01 3 123036910 123036910 C T ADCY5 Missense_Mutation p.V771I 0.06 tolerated(0.15) benign(0.088) TCGA-41-3392-01 3 17052411 17052411 A T PLCL2 Missense_Mutation p.I399F 0.39 tolerated(0.43) benign(0.285) TCGA-41-3392-01 3 172241153 172241153 C A TNFSF10 Missense_Mutation p.G8W 0.32 deleterious_low_confidence(0) probably_damaging(0.935) TCGA-41-3392-01 3 195516064 195516064 C T MUC4 Missense_Mutation p.R796Q 0.40 unknown(0) TCGA-41-3392-01 3 42602655 42602655 C G SEC22C Silent p.V160V 0.43 TCGA-41-3392-01 3 48965232 48965232 G T ARIH2 Missense_Mutation p.A81S 0.31 tolerated(1) benign(0.001) TCGA-41-3392-01 3 77147196 77147196 G A ROBO2 Silent p.P47P 0.19 TCGA-41-3392-01 3 9825867 9825867 G A TADA3 Silent p.R317R 0.46 TCGA-41-3392-01 4 15060838 15060838 G A CPEB2 Missense_Mutation p.D870N 0.11 deleterious_low_confidence(0.03) probably_damaging(0.95) TCGA-41-3392-01 4 46979123 46979123 C T GABRA4 Missense_Mutation p.D178N 0.46 tolerated(0.58) benign(0.099) TCGA-41-3392-01 4 48490671 48490671 C T SLC10A4 Silent p.L343L 0.38 TCGA-41-3392-01 4 52890116 52890116 G A SGCB 3'UTR 0.10 TCGA-41-3392-01 4 8233729 8233729 T A SH3TC1 Missense_Mutation p.C993S 0.35 deleterious(0.01) probably_damaging(0.963) TCGA-41-3392-01 5 13886073 13886073 C T DNAH5 Missense_Mutation p.A915T 0.24 benign(0.006) TCGA-41-3392-01 5 140012230 140012230 T A CD14 Silent p.L113L 0.38 TCGA-41-3392-01 5 140166089 140166089 A G PCDHA1 Missense_Mutation p.R72G 0.06 tolerated_low_confidence(1) benign(0.003) TCGA-41-3392-01 5 140263838 140263838 C T PCDHA13 Missense_Mutation p.T662M 0.10 deleterious_low_confidence(0.03) probably_damaging(0.946) TCGA-41-3392-01 5 167420177 167420177 G A TENM2 Silent p.A392A 0.41 TCGA-41-3392-01 5 168149967 168149967 G T SLIT3 Silent p.T794T 0.25 TCGA-41-3392-01 5 76012517 76012517 C T F2R Intron 0.48 TCGA-41-3392-01 6 109690088 109690088 C A CD164 Missense_Mutation p.C187F 0.15 deleterious(0) possibly_damaging(0.639) TCGA-41-3392-01 6 117686282 117686282 G - ROS1 Frame_Shift_Del p.P1020Lfs*60 0.13 TCGA-41-3392-01 6 29455303 29455303 G A MAS1L Missense_Mutation p.S126L 0.34 tolerated(0.27) benign(0.001) TCGA-41-3392-01 6 31937127 31937127 C T SKIV2L Missense_Mutation p.T1157M 0.44 deleterious(0.03) possibly_damaging(0.835) TCGA-41-3392-01 6 32165183 32165183 C T NOTCH4 Missense_Mutation p.A1649T 0.07 deleterious(0.01) benign(0.079) TCGA-41-3392-01 7 129040182 129040182 G A AHCYL2 Missense_Mutation p.C292Y 0.18 tolerated(0.07) probably_damaging(0.992) TCGA-41-3392-01 7 154561187 154561187 A G DPP6 Missense_Mutation p.Y315C 0.07 deleterious(0) probably_damaging(1) TCGA-41-3392-01 7 2559902 2559902 C - LFNG Frame_Shift_Del p.W137Gfs*8 0.29 TCGA-41-3392-01 7 95664970 95664970 G A DYNC1I1 Missense_Mutation p.A441T 0.16 tolerated(0.06) probably_damaging(0.996) TCGA-41-3392-01 8 135622736 135622736 A T ZFAT Nonsense_Mutation p.L204* 0.06 TCGA-41-3392-01 9 124936831 124936831 G A MORN5 Missense_Mutation p.D122N 0.11 deleterious(0) probably_damaging(1) TCGA-41-3392-01 X 100169504 100169504 A G XKRX Silent p.Y391Y 0.04 TCGA-41-3392-01 X 142718880 142718880 C T SLITRK4 Silent p.S15S 0.20 TCGA-41-3393-01 10 93579732 93579732 G A TNKS2 Missense_Mutation p.V224I 0.36 tolerated(0.28) benign(0.002) TCGA-41-3393-01 11 102195409 102195409 T C BIRC3 Missense_Mutation p.Y57H 0.30 deleterious(0) probably_damaging(1) TCGA-41-3393-01 12 10163346 10163346 G A CLEC12B 5'UTR 0.14 TCGA-41-3393-01 12 21472384 21472384 A T SLCO1A2 Intron 0.28 TCGA-41-3393-01 12 50484023 50484023 G A SMARCD1 Splice_Site p.X292_splice 0.29 TCGA-41-3393-01 12 5153876 5153876 C T KCNA5 Missense_Mutation p.P188L 0.36 deleterious(0) probably_damaging(1) TCGA-41-3393-01 12 55025622 55025622 T C LACRT Silent p.K85K 0.30 TCGA-41-3393-01 12 81111227 81111227 C T MYF5 Missense_Mutation p.R129C 0.26 deleterious(0.02) probably_damaging(0.939) TCGA-41-3393-01 14 31675061 31675061 G A HECTD1 Missense_Mutation p.L28F 0.24 deleterious(0) probably_damaging(0.998) TCGA-41-3393-01 15 27128491 27128491 C A GABRA5 Missense_Mutation p.T95N 0.27 deleterious(0) probably_damaging(0.999) TCGA-41-3393-01 16 67318812 67318812 C T PLEKHG4 Missense_Mutation p.A630V 0.28 tolerated(0.16) benign(0.014) TCGA-41-3393-01 17 8638565 8638565 C T CCDC42 Missense_Mutation p.R241H 0.08 tolerated(0.44) probably_damaging(0.994) TCGA-41-3393-01 18 19154087 19154087 C T ESCO1 Missense_Mutation p.V240M 0.26 deleterious(0) possibly_damaging(0.711) TCGA-41-3393-01 18 70450913 70450913 G A NETO1 Missense_Mutation p.P290S 0.26 deleterious(0.04) possibly_damaging(0.524) TCGA-41-3393-01 19 17039895 17039895 C T CPAMD8 Missense_Mutation p.V1048I 0.28 tolerated(0.08) probably_damaging(0.999) TCGA-41-3393-01 19 22785268 22785268 T A AC011467.1 5'Flank 0.24 TCGA-41-3393-01 19 35232834 35232839 ATATAA - ZNF181 In_Frame_Del p.Y517_K518del 0.20 TCGA-41-3393-01 19 36159540 36159540 G A UPK1A Missense_Mutation p.R90Q 0.22 deleterious(0) probably_damaging(1) TCGA-41-3393-01 19 47844750 47844750 C T C5AR2 Missense_Mutation p.R232W 0.23 tolerated(0.18) benign(0) TCGA-41-3393-01 19 48519291 48519291 C T ELSPBP1 Missense_Mutation p.T117M 0.21 tolerated(0.18) benign(0.006) TCGA-41-3393-01 19 49867863 49867863 G A DKKL1 Missense_Mutation p.R12Q 0.19 tolerated_low_confidence(0.36) benign(0) TCGA-41-3393-01 19 51768774 51768774 T A SIGLECL1 Missense_Mutation p.S59T 0.28 tolerated(0.13) probably_damaging(0.997) TCGA-41-3393-01 19 9088222 9088222 G A MUC16 Missense_Mutation p.T1198M 0.26 unknown(0) TCGA-41-3393-01 1 110735165 110735165 G A SLC6A17 Missense_Mutation p.V382I 0.19 tolerated(0.58) benign(0.025) TCGA-41-3393-01 1 145075935 145075935 C T PDE4DIP 5'UTR 0.09 TCGA-41-3393-01 1 151315095 151315095 G C RFX5 Nonsense_Mutation p.S473* 0.24 TCGA-41-3393-01 1 207039922 207039922 C T IL20 Missense_Mutation p.R107W 0.27 deleterious(0) probably_damaging(0.996) TCGA-41-3393-01 1 238050155 238050155 C T ZP4 Missense_Mutation p.R252Q 0.29 tolerated(1) benign(0.002) TCGA-41-3393-01 1 3412515 3412515 G A MEGF6 Silent p.C1270C 0.46 TCGA-41-3393-01 1 43909459 43909459 C T SZT2 Silent p.P2882P 0.29 TCGA-41-3393-01 1 63902708 63902708 A G ALG6 3'UTR 0.44 TCGA-41-3393-01 1 91182336 91182336 C T BARHL2 Silent p.T139T 0.44 TCGA-41-3393-01 20 36026230 36026230 C G SRC Missense_Mutation p.Q278E 0.07 tolerated(0.22) probably_damaging(0.967) TCGA-41-3393-01 20 3674185 3674185 G A SIGLEC1 Silent p.V1139V 0.27 TCGA-41-3393-01 20 40713368 40713368 G T PTPRT Missense_Mutation p.Q1364K 0.19 tolerated(0.09) benign(0.061) TCGA-41-3393-01 20 61511189 61511189 C T DIDO1 Missense_Mutation p.R2040H 0.23 probably_damaging(0.997) TCGA-41-3393-01 21 46117103 46117103 C T KRTAP10-12 5'UTR 0.26 TCGA-41-3393-01 22 22891015 22891015 G A PRAME Missense_Mutation p.S335L 0.27 tolerated(0.31) benign(0.012) TCGA-41-3393-01 22 40283672 40283672 G A ENTHD1 Silent p.N27N 0.31 TCGA-41-3393-01 22 51063597 51063597 G A ARSA Silent p.C502C 0.42 TCGA-41-3393-01 2 163253351 163253351 G A KCNH7 Nonsense_Mutation p.R838* 0.25 TCGA-41-3393-01 2 166799848 166799848 G T TTC21B Missense_Mutation p.H145N 0.17 deleterious(0.04) benign(0.001) TCGA-41-3393-01 2 192700730 192700730 G A SDPR Silent p.Y399Y 0.28 TCGA-41-3393-01 3 111901019 111901019 C T SLC9C1 Silent p.P870P 0.06 TCGA-41-3393-01 3 138739151 138739151 G A PRR23B Missense_Mutation p.S118L 0.18 tolerated(0.65) benign(0.005) TCGA-41-3393-01 3 196664454 196664454 C T NCBP2 Missense_Mutation p.R109Q 0.32 deleterious(0.03) probably_damaging(0.987) TCGA-41-3393-01 4 70822070 70822070 A G CSN2 Nonstop_Mutation p.*227Qext*14 0.30 TCGA-41-3393-01 4 74279142 74279142 C G ALB Missense_Mutation p.D283E 0.27 tolerated(1) benign(0.001) TCGA-41-3393-01 4 74354363 74354363 A G AFM Missense_Mutation p.S244G 0.28 deleterious(0.03) benign(0.372) TCGA-41-3393-01 4 90874191 90874191 T G MMRN1 Missense_Mutation p.F1103L 0.32 deleterious(0) probably_damaging(0.999) TCGA-41-3393-01 5 139622928 139622928 C T CYSTM1 Missense_Mutation p.P76S 0.23 tolerated_low_confidence(0.41) unknown(0) TCGA-41-3393-01 5 148417964 148417964 C T SH3TC2 Missense_Mutation p.G299S 0.26 deleterious(0) probably_damaging(0.999) TCGA-41-3393-01 6 29080039 29080039 C T OR2J3 Silent p.D124D 0.25 TCGA-41-3393-01 6 32041532 32041532 G A RNA5SP206 3'Flank 0.33 TCGA-41-3393-01 6 36891125 36891125 T A C6orf89 Missense_Mutation p.Y325N 0.32 deleterious(0) probably_damaging(0.947) TCGA-41-3393-01 7 138764823 138764823 C T ZC3HAV1 Silent p.A288A 0.20 TCGA-41-3393-01 7 139229114 139229114 G A CLEC2L 3'UTR 0.21 TCGA-41-3393-01 7 140154505 140154505 C A MKRN1 Nonsense_Mutation p.E421* 0.13 TCGA-41-3393-01 7 36616236 36616236 C T AOAH Missense_Mutation p.R322H 0.19 tolerated(0.07) benign(0.179) TCGA-41-3393-01 7 43484236 43484236 G T HECW1 Nonsense_Mutation p.E489* 0.17 TCGA-41-3393-01 7 50607722 50607722 G A DDC Missense_Mutation p.T69M 0.24 deleterious(0.01) probably_damaging(1) TCGA-41-3393-01 7 84727157 84727157 T C SEMA3D Silent p.L92L 0.23 TCGA-41-3393-01 7 87774461 87774461 G A ADAM22 Missense_Mutation p.G448S 0.23 deleterious(0) probably_damaging(0.998) TCGA-41-3393-01 8 22165552 22165552 G A PIWIL2 Missense_Mutation p.R551H 0.13 deleterious(0.03) benign(0.205) TCGA-41-3393-01 8 24181517 24181517 G A ADAM28 Splice_Site p.X297_splice 0.31 TCGA-41-3393-01 9 114332377 114332377 G A PTGR1 Silent p.V291V 0.24 TCGA-41-3393-01 9 140086667 140086667 C T TPRN Intron 0.26 TCGA-41-3393-01 9 141012527 141012527 A T CACNA1B Silent p.G1969G 0.32 TCGA-41-3393-01 X 102755508 102755508 G A RAB40A Silent p.D59D 0.22 TCGA-41-3393-01 X 105179166 105179166 C T NRK Silent p.Y1169Y 0.19 TCGA-41-3393-01 X 105970562 105970562 C T RNF128 Missense_Mutation p.A140V 0.11 deleterious(0) probably_damaging(1) TCGA-41-3393-01 X 117748686 117748686 T C DOCK11 Missense_Mutation p.I1043T 0.23 tolerated(0.13) benign(0.002) TCGA-41-3393-01 X 12735884 12735884 C T FRMPD4 Missense_Mutation p.P980L 0.25 tolerated_low_confidence(0.05) benign(0.047) TCGA-41-3393-01 X 132161937 132161937 G A USP26 Silent p.N104N 0.24 TCGA-41-3393-01 X 134426220 134426220 A G ZNF75D Silent p.P197P 0.18 TCGA-41-3393-01 X 150840069 150840069 G A PASD1 Missense_Mutation p.V419I 0.29 tolerated(1) benign(0.002) TCGA-41-3393-01 X 152083025 152083025 G A ZNF185 5'UTR 0.12 TCGA-41-3393-01 X 2867414 2867414 G A ARSE Missense_Mutation p.T262M 0.17 deleterious(0.01) probably_damaging(0.956) TCGA-41-3393-01 X 48374470 48374470 G A PORCN Missense_Mutation p.R370Q 0.19 tolerated(0.59) benign(0.001) TCGA-41-3393-01 X 54467162 54467162 G A TSR2 Missense_Mutation p.E41K 0.26 deleterious(0.01) probably_damaging(0.997) TCGA-41-3393-01 X 64721735 64721735 G A ZC3H12B Missense_Mutation p.R386H 0.26 deleterious(0) benign(0.062) TCGA-41-3393-01 X 70147393 70147393 C T SLC7A3 Missense_Mutation p.R375Q 0.16 tolerated(0.39) benign(0.037) TCGA-41-3393-01 X 71694532 71694532 T A HDAC8 Intron 0.11 TCGA-41-3393-01 X 9693807 9693807 G C GPR143 Silent p.L398L 0.18 TCGA-41-3915-01 10 102789812 102789812 G T PDZD7 Silent p.P55P 0.17 TCGA-41-3915-01 10 118728190 118728190 C T KIAA1598 Missense_Mutation p.V49I 0.32 tolerated(0.39) benign(0.002) TCGA-41-3915-01 10 135370273 135370273 C A SYCE1 Missense_Mutation p.W173L 0.15 deleterious(0.04) benign(0.058) TCGA-41-3915-01 10 89692905 89692905 G A PTEN Missense_Mutation p.R130Q 0.71 deleterious(0.02) probably_damaging(0.989) TCGA-41-3915-01 11 55371464 55371464 C T OR4C11 Missense_Mutation p.R129H 0.33 tolerated(1) benign(0.002) TCGA-41-3915-01 11 57156544 57156544 G A PRG2 Missense_Mutation p.P102L 0.04 deleterious(0.02) probably_damaging(0.989) TCGA-41-3915-01 11 57156546 57156546 G A PRG2 Silent p.I101I 0.05 TCGA-41-3915-01 11 64572600 64572600 C T MEN1 Missense_Mutation p.G424D 0.09 deleterious(0) probably_damaging(0.996) TCGA-41-3915-01 11 9171674 9171674 G A DENND5A Missense_Mutation p.L897F 0.13 deleterious(0) probably_damaging(0.98) TCGA-41-3915-01 12 25699396 25699396 T C IFLTD1 Missense_Mutation p.K135E 0.25 tolerated(0.14) benign(0.079) TCGA-41-3915-01 12 39268300 39268300 T A CPNE8 Nonsense_Mutation p.R38* 0.35 TCGA-41-3915-01 13 19748215 19748215 T A TUBA3C Missense_Mutation p.T381S 0.20 tolerated_low_confidence(0.11) possibly_damaging(0.602) TCGA-41-3915-01 14 105413630 105413630 G T AHNAK2 Missense_Mutation p.H2720N 0.25 benign(0.311) TCGA-41-3915-01 15 68118619 68118619 C T SKOR1 Silent p.C337C 0.06 TCGA-41-3915-01 16 88909162 88909162 C A GALNS Missense_Mutation p.G66W 0.07 deleterious(0) probably_damaging(1) TCGA-41-3915-01 16 89346669 89346669 G A ANKRD11 Missense_Mutation p.A2094V 0.14 benign(0.019) TCGA-41-3915-01 17 39577227 39577227 T C KRT37 Missense_Mutation p.N418S 0.37 tolerated(0.05) possibly_damaging(0.636) TCGA-41-3915-01 17 53237217 53237217 G A STXBP4 Missense_Mutation p.R536H 0.14 deleterious(0.05) benign(0.075) TCGA-41-3915-01 19 10625052 10625052 G A S1PR5 Silent p.Y212Y 0.41 TCGA-41-3915-01 19 2339146 2339146 A G SPPL2B RNA 0.34 TCGA-41-3915-01 19 44223763 44223763 C T IRGC Silent p.S351S 0.28 TCGA-41-3915-01 19 45322375 45322375 G A BCAM Missense_Mutation p.D467N 0.32 deleterious(0.01) possibly_damaging(0.828) TCGA-41-3915-01 19 45515222 45515222 C T RELB Silent p.N64N 0.43 TCGA-41-3915-01 1 1149428 1149428 G A TNFRSF4 Missense_Mutation p.T27M 0.42 deleterious(0.01) benign(0.212) TCGA-41-3915-01 1 163325300 163325300 T C NUF2 3'UTR 0.08 TCGA-41-3915-01 1 21106920 21106921 - T HP1BP3 Frame_Shift_Ins p.T5Nfs*5 0.30 TCGA-41-3915-01 1 243327793 243327793 G A CEP170 Nonsense_Mutation p.R1157* 0.12 TCGA-41-3915-01 1 247920937 247920937 C T OR1C1 Missense_Mutation p.V258I 0.34 deleterious(0.04) benign(0.156) TCGA-41-3915-01 1 33408041 33408042 - GC RNF19B Frame_Shift_Ins p.L476Pfs*15 0.37 TCGA-41-3915-01 1 53099192 53099192 G C FAM159A Silent p.V9V 0.17 TCGA-41-3915-01 1 85559260 85559260 A T WDR63 Missense_Mutation p.Q326L 0.24 deleterious(0) possibly_damaging(0.677) TCGA-41-3915-01 1 85592202 85592202 G A WDR63 Silent p.P707P 0.30 TCGA-41-3915-01 20 30193855 30193855 G A ID1 Splice_Site p.X143_splice 0.05 TCGA-41-3915-01 21 33876254 33876254 G T EVA1C Missense_Mutation p.S293I 0.04 tolerated(0.11) benign(0.034) TCGA-41-3915-01 21 33876277 33876277 G T EVA1C Missense_Mutation p.D301Y 0.03 deleterious(0) possibly_damaging(0.759) TCGA-41-3915-01 2 201332021 201332021 C T SPATS2L Silent p.L286L 0.46 TCGA-41-3915-01 3 124438372 124438372 A G RP11-71H17.7 5'Flank 0.49 TCGA-41-3915-01 3 169555368 169555368 G C LRRIQ4 Missense_Mutation p.K544N 0.15 tolerated_low_confidence(0.11) unknown(0) TCGA-41-3915-01 3 18390645 18390645 A T SATB1 3'UTR 0.14 TCGA-41-3915-01 4 48552523 48552523 C A FRYL Intron 0.20 TCGA-41-3915-01 4 72620754 72620754 G C GC Missense_Mutation p.L388V 0.34 tolerated(0.32) benign(0.015) TCGA-41-3915-01 4 74846906 74846906 G A PF4 3'UTR 0.44 TCGA-41-3915-01 4 81504250 81504250 G A C4orf22 Silent p.T82T 0.37 TCGA-41-3915-01 4 82125882 82125882 C T PRKG2 Missense_Mutation p.R107Q 0.25 tolerated(0.83) benign(0.002) TCGA-41-3915-01 5 140588488 140588488 C T PCDHB12 Silent p.N3N 0.18 TCGA-41-3915-01 5 169533358 169533358 G C FOXI1 Missense_Mutation p.A133P 0.65 deleterious(0) probably_damaging(1) TCGA-41-3915-01 5 67589298 67589298 C A PIK3R1 Missense_Mutation p.S429Y 0.40 deleterious(0.01) probably_damaging(0.999) TCGA-41-3915-01 5 7709333 7709333 C T ADCY2 Missense_Mutation p.R471W 0.17 deleterious(0.02) benign(0.006) TCGA-41-3915-01 7 91991520 91991520 T A ANKIB1 Missense_Mutation p.H473Q 0.08 deleterious(0) probably_damaging(0.999) TCGA-41-3915-01 8 25199986 25199986 G C DOCK5 Missense_Mutation p.M860I 0.11 tolerated(0.21) benign(0.04) TCGA-41-3915-01 9 130674960 130674960 C A ST6GALNAC4 Splice_Site p.X67_splice 0.53 TCGA-41-3915-01 9 18574217 18574217 C T ADAMTSL1 Missense_Mutation p.R143C 0.05 deleterious(0) probably_damaging(1) TCGA-41-3915-01 9 21141168 21141168 C T IFNW1 Silent p.G134G 0.33 TCGA-41-3915-01 Y 9195471 9195471 T G TSPY8 Missense_Mutation p.L7R 0.31 deleterious_low_confidence(0) benign(0.193) TCGA-41-4097-01 10 134523875 134523875 G C INPP5A Missense_Mutation p.D188H 0.10 deleterious(0) possibly_damaging(0.685) TCGA-41-4097-01 10 81066012 81066012 A C ZMIZ1 Missense_Mutation p.E860A 0.46 benign(0.207) TCGA-41-4097-01 10 89690814 89690814 G C PTEN Missense_Mutation p.R74T 0.36 deleterious(0) probably_damaging(0.99) TCGA-41-4097-01 11 123847863 123847863 C T OR10S1 Missense_Mutation p.R179H 0.19 tolerated(0.29) benign(0.006) TCGA-41-4097-01 11 65271185 65271186 TC - MALAT1 RNA 0.26 TCGA-41-4097-01 11 66101986 66101986 C A RIN1 Silent p.L428L 0.16 TCGA-41-4097-01 11 77301035 77301035 G A AQP11 5'UTR 0.13 TCGA-41-4097-01 11 94731105 94731105 C T KDM4D Missense_Mutation p.A190V 0.11 deleterious(0.01) possibly_damaging(0.811) TCGA-41-4097-01 12 108962628 108962628 A G ISCU Missense_Mutation p.K147R 0.10 tolerated(0.12) benign(0.085) TCGA-41-4097-01 12 133383767 133383767 C T GOLGA3 Missense_Mutation p.S429N 0.15 tolerated(0.61) possibly_damaging(0.839) TCGA-41-4097-01 12 41831581 41831581 A C PDZRN4 Intron 0.11 TCGA-41-4097-01 12 49432573 49432573 C G KMT2D Missense_Mutation p.G2856R 0.13 probably_damaging(0.987) TCGA-41-4097-01 12 54105903 54105903 C G CALCOCO1 Missense_Mutation p.G634A 0.20 tolerated(0.42) benign(0.006) TCGA-41-4097-01 12 5687643 5687643 G C ANO2 Missense_Mutation p.P759A 0.12 deleterious(0) possibly_damaging(0.907) TCGA-41-4097-01 12 85450952 85450952 C G LRRIQ1 Missense_Mutation p.T794S 0.19 deleterious(0.04) benign(0.156) TCGA-41-4097-01 13 35883701 35883701 G C NBEA Missense_Mutation p.A1959P 0.13 deleterious(0) possibly_damaging(0.799) TCGA-41-4097-01 14 102771337 102771337 C G MOK 5'UTR 0.15 TCGA-41-4097-01 14 69558584 69558584 C A DCAF5 Missense_Mutation p.G229V 0.11 tolerated(0.06) possibly_damaging(0.838) TCGA-41-4097-01 15 50497504 50497504 G A SLC27A2 Missense_Mutation p.V306I 0.28 tolerated(0.08) benign(0.127) TCGA-41-4097-01 15 75501019 75501019 C T C15orf39 Missense_Mutation p.T877M 0.14 deleterious(0) probably_damaging(0.999) TCGA-41-4097-01 15 76484332 76484332 G A C15orf27 Silent p.A264A 0.08 TCGA-41-4097-01 16 89655119 89655119 C T CPNE7 Missense_Mutation p.R397W 0.21 deleterious(0) probably_damaging(0.999) TCGA-41-4097-01 16 89989839 89989839 C T TUBB3 Silent p.G10G 0.20 TCGA-41-4097-01 17 29508778 29508778 C G NF1 Nonsense_Mutation p.Y235* 0.41 TCGA-41-4097-01 17 42330723 42330723 G C SLC4A1 Missense_Mutation p.P692A 0.13 deleterious(0.02) probably_damaging(0.951) TCGA-41-4097-01 17 48773294 48773294 C T ANKRD40 3'UTR 0.34 TCGA-41-4097-01 18 72167228 72167228 T C CNDP2 Missense_Mutation p.L7P 0.26 deleterious(0) possibly_damaging(0.548) TCGA-41-4097-01 18 72632618 72632618 G A ZNF407 Missense_Mutation p.E1800K 0.18 deleterious(0) probably_damaging(0.994) TCGA-41-4097-01 19 18285871 18285871 G T IFI30 Missense_Mutation p.G52W 0.16 deleterious(0.02) possibly_damaging(0.502) TCGA-41-4097-01 19 48343251 48343251 C T CRX 3'UTR 0.14 TCGA-41-4097-01 19 52132644 52132644 T A SIGLEC5 Missense_Mutation p.T223S 0.20 tolerated(0.45) benign(0.09) TCGA-41-4097-01 19 53343814 53343814 A T ZNF468 3'UTR 0.19 TCGA-41-4097-01 19 57802944 57802944 C G ZNF460 Missense_Mutation p.F345L 0.27 deleterious(0) probably_damaging(1) TCGA-41-4097-01 1 186413476 186413476 T G PDC Missense_Mutation p.T126P 0.21 deleterious(0.02) possibly_damaging(0.825) TCGA-41-4097-01 1 192127717 192127717 G C RGS18 5'UTR 0.08 TCGA-41-4097-01 1 204006476 204006476 T A LINC00303 RNA 0.38 TCGA-41-4097-01 1 237550598 237550598 C T RYR2 Silent p.N198N 0.14 TCGA-41-4097-01 1 28178026 28178026 C G PPP1R8 3'UTR 0.25 TCGA-41-4097-01 1 2938845 2938845 G T ACTRT2 Missense_Mutation p.A199S 0.10 deleterious(0.04) benign(0.119) TCGA-41-4097-01 1 84335533 84335533 T A TTLL7 3'UTR 0.12 TCGA-41-4097-01 20 35060225 35060225 G A DLGAP4 Silent p.S35S 0.17 TCGA-41-4097-01 22 51160153 51160153 A G SHANK3 Missense_Mutation p.R1314G 0.12 probably_damaging(0.991) TCGA-41-4097-01 2 179392028 179392028 G A TTN Missense_Mutation p.P35896L 0.08 TCGA-41-4097-01 2 21227177 21227177 G A APOB Silent p.D4017D 0.27 TCGA-41-4097-01 3 182872086 182872086 A G LAMP3 Missense_Mutation p.I48T 0.29 tolerated(1) benign(0) TCGA-41-4097-01 3 47882649 47882649 G A DHX30 Missense_Mutation p.A217T 0.35 tolerated(1) benign(0) TCGA-41-4097-01 4 189068417 189068417 C T TRIML1 Missense_Mutation p.P433L 0.26 tolerated(0.14) probably_damaging(1) TCGA-41-4097-01 4 73951059 73951059 C - ANKRD17 Frame_Shift_Del p.A2356Hfs*23 0.22 TCGA-41-4097-01 5 127611828 127611828 G T FBN2 Missense_Mutation p.P2499Q 0.24 deleterious(0.02) probably_damaging(0.998) TCGA-41-4097-01 5 140227886 140227886 G C PCDHA9 5'UTR 0.11 TCGA-41-4097-01 6 31975604 31975604 C G AL645922.1 5'Flank 0.14 TCGA-41-4097-01 7 151945049 151945049 C G KMT2C Missense_Mutation p.G824R 0.08 probably_damaging(1) TCGA-41-4097-01 7 4947054 4947054 G T MMD2 Missense_Mutation p.S262R 0.07 tolerated(0.26) benign(0.211) TCGA-41-4097-01 8 101018320 101018320 T C RGS22 Silent p.E793E 0.31 TCGA-41-4097-01 8 1871746 1871746 C T ARHGEF10 Missense_Mutation p.P791L 0.18 deleterious(0.01) probably_damaging(0.954) TCGA-41-4097-01 8 77617628 77617628 G A ZFHX4 Missense_Mutation p.M435I 0.15 benign(0.043) TCGA-41-4097-01 9 102626284 102626284 T G NR4A3 3'UTR 0.14 TCGA-41-4097-01 9 107288582 107288582 T C OR13C4 Silent p.V303V 0.19 TCGA-41-4097-01 X 123182854 123182854 G T STAG2 Splice_Site p.X274_splice 0.27 TCGA-41-4097-01 X 14026890 14026890 C T GEMIN8 3'UTR 0.10 TCGA-41-4097-01 X 141293040 141293040 C T MAGEC2 5'UTR 0.21 TCGA-41-4097-01 X 142121936 142121936 G A SPANXN4 Silent p.E68E 0.17 TCGA-41-4097-01 X 23899048 23899048 G A APOO Missense_Mutation p.P11S 0.39 tolerated(0.13) possibly_damaging(0.791) TCGA-41-4097-01 X 30254384 30254384 A G MAGEB3 Missense_Mutation p.T115A 0.11 tolerated(0.7) benign(0) TCGA-41-4097-01 X 48126300 48126300 C T SSX1 3'UTR 0.30 TCGA-41-4097-01 X 70324148 70324148 C T CXorf65 Silent p.P142P 0.28 TCGA-41-4097-01 X 73040796 73040796 G A XIST RNA 0.19 TCGA-41-5651-01 10 121600464 121600464 C A MCMBP Missense_Mutation p.R380I 0.73 deleterious(0) probably_damaging(1) TCGA-41-5651-01 10 23321938 23321938 G T ARMC3 Missense_Mutation p.A799S 0.07 deleterious(0) probably_damaging(0.999) TCGA-41-5651-01 11 103780460 103780460 G A PDGFD Nonsense_Mutation p.R359* 0.49 TCGA-41-5651-01 11 119054075 119054075 G A NLRX1 Missense_Mutation p.R952H 0.46 deleterious(0) possibly_damaging(0.542) TCGA-41-5651-01 11 128910863 128910863 T A ARHGAP32 Missense_Mutation p.Q321H 0.44 deleterious(0) possibly_damaging(0.897) TCGA-41-5651-01 11 3690464 3690464 G A CHRNA10 Silent p.S108S 0.46 TCGA-41-5651-01 11 64514249 64514249 C T PYGM Missense_Mutation p.R804Q 0.45 tolerated(0.07) benign(0.058) TCGA-41-5651-01 12 57963411 57963411 G A KIF5A Silent p.K354K 0.05 TCGA-41-5651-01 12 58109576 58109576 G A OS9 Missense_Mutation p.D205N 0.06 deleterious(0) possibly_damaging(0.789) TCGA-41-5651-01 12 58204641 58204641 G A AVIL Silent p.I172I 0.04 TCGA-41-5651-01 12 9142272 9142272 C T KLRG1 Missense_Mutation p.T14M 0.39 tolerated(0.09) benign(0.116) TCGA-41-5651-01 14 105411658 105411658 G A AHNAK2 Missense_Mutation p.P3377L 0.48 benign(0.01) TCGA-41-5651-01 14 23564497 23564497 G A C14orf119 5'UTR 0.35 TCGA-41-5651-01 14 23857466 23857466 G C MYH6 Silent p.T1419T 0.05 TCGA-41-5651-01 14 63468087 63468087 G A KCNH5 Missense_Mutation p.T132M 0.41 deleterious(0) probably_damaging(0.999) TCGA-41-5651-01 14 74971518 74971518 C T LTBP2 Silent p.V1472V 0.39 TCGA-41-5651-01 14 81744722 81744722 T G STON2 Silent p.A311A 0.05 TCGA-41-5651-01 14 94069684 94069684 G A UNC79 Missense_Mutation p.R1048H 0.49 tolerated(0.07) probably_damaging(0.998) TCGA-41-5651-01 14 94953697 94953697 G A SERPINA12 Silent p.S396S 0.57 TCGA-41-5651-01 15 49217141 49217141 C A SHC4 Missense_Mutation p.M197I 0.69 deleterious(0.03) benign(0.172) TCGA-41-5651-01 15 52537563 52537563 G A MYO5C Silent p.H722H 0.85 TCGA-41-5651-01 15 73994767 73994767 A G CD276 Missense_Mutation p.D84G 0.63 deleterious(0) probably_damaging(0.989) TCGA-41-5651-01 16 11004047 11004047 C T CIITA Missense_Mutation p.T940M 0.35 tolerated(0.54) benign(0.029) TCGA-41-5651-01 16 24166165 24166165 G T PRKCB Missense_Mutation p.C409F 0.14 deleterious(0) probably_damaging(0.986) TCGA-41-5651-01 16 27373866 27373866 G C IL4R Missense_Mutation p.G398A 0.42 deleterious(0.03) benign(0.221) TCGA-41-5651-01 16 67235531 67235531 G A ELMO3 Missense_Mutation p.D355N 0.44 tolerated(0.1) probably_damaging(0.975) TCGA-41-5651-01 16 67681849 67681849 C T RLTPR Silent p.S353S 0.56 TCGA-41-5651-01 16 90128673 90128673 G A PRDM7 Intron 0.24 TCGA-41-5651-01 17 43332647 43332647 C T SPATA32 Missense_Mutation p.R301H 0.39 deleterious(0.05) benign(0) TCGA-41-5651-01 17 74011625 74011625 C T EVPL Missense_Mutation p.V599M 0.33 tolerated(0.24) benign(0.014) TCGA-41-5651-01 17 7578555 7578555 C T TP53 Splice_Site p.X126_splice 0.93 TCGA-41-5651-01 18 55862664 55862664 G A NEDD4L Intron 0.64 TCGA-41-5651-01 19 11978931 11978931 T C ZNF439 Silent p.S349S 0.26 TCGA-41-5651-01 19 15083572 15083572 G A SLC1A6 Missense_Mutation p.R51C 0.38 tolerated(0.05) probably_damaging(0.985) TCGA-41-5651-01 19 41597756 41597756 G A CYP2A13 Silent p.T258T 0.74 TCGA-41-5651-01 19 9033637 9033637 G A MUC16 Silent p.N12100N 0.30 TCGA-41-5651-01 1 152275826 152275826 C T FLG Missense_Mutation p.G3846S 0.62 unknown(0) TCGA-41-5651-01 1 152275878 152275878 C T FLG Silent p.S3828S 0.33 TCGA-41-5651-01 1 158627401 158627401 G A SPTA1 Nonsense_Mutation p.R891* 0.17 TCGA-41-5651-01 1 158637763 158637763 C G SPTA1 Missense_Mutation p.Q641H 0.70 tolerated(0.07) possibly_damaging(0.633) TCGA-41-5651-01 1 237167534 237167534 C A MT1HL1 Missense_Mutation p.G47C 0.20 deleterious(0) unknown(0) TCGA-41-5651-01 1 40945132 40945132 G A ZFP69 Silent p.E33E 0.43 TCGA-41-5651-01 20 16254013 16254013 G A KIF16B Missense_Mutation p.T465I 0.38 deleterious(0.03) possibly_damaging(0.826) TCGA-41-5651-01 20 18507120 18507120 G A SEC23B Missense_Mutation p.R313H 0.28 deleterious(0) probably_damaging(1) TCGA-41-5651-01 20 32256043 32256043 T C ACTL10 3'UTR 0.32 TCGA-41-5651-01 20 44674611 44674611 A G SLC12A5 Missense_Mutation p.D578G 0.30 deleterious(0.02) probably_damaging(0.966) TCGA-41-5651-01 20 50159018 50159018 C T NFATC2 Silent p.Q7Q 0.27 TCGA-41-5651-01 20 62729401 62729401 C T OPRL1 Silent p.D160D 0.27 TCGA-41-5651-01 21 35231057 35231057 A C ITSN1 Missense_Mutation p.N1284T 0.16 deleterious(0) probably_damaging(0.995) TCGA-41-5651-01 21 46320382 46320382 G A ITGB2 Silent p.I250I 0.42 TCGA-41-5651-01 22 30856050 30856050 G A SEC14L3 Silent p.D387D 0.43 TCGA-41-5651-01 22 30980618 30980618 T C PES1 Missense_Mutation p.K152R 0.31 tolerated(0.25) possibly_damaging(0.535) TCGA-41-5651-01 2 103039783 103039783 C T IL18RAP Nonsense_Mutation p.R16* 0.38 TCGA-41-5651-01 2 111850527 111850527 C T ACOXL Missense_Mutation p.T509M 0.47 tolerated(0.35) benign(0.006) TCGA-41-5651-01 2 130832880 130832880 G A POTEF Missense_Mutation p.A722V 0.31 deleterious_low_confidence(0.01) probably_damaging(0.961) TCGA-41-5651-01 2 215855594 215855594 C T ABCA12 Silent p.S1152S 0.50 TCGA-41-5651-01 2 220108249 220108249 A T GLB1L Missense_Mutation p.L16H 0.39 tolerated(0.24) possibly_damaging(0.869) TCGA-41-5651-01 2 223781199 223781199 A G ACSL3 Missense_Mutation p.M181V 0.44 tolerated(0.07) benign(0.217) TCGA-41-5651-01 2 37873863 37873863 G A CDC42EP3 5'UTR 0.45 TCGA-41-5651-01 2 74842218 74842218 T C M1AP Missense_Mutation p.Q100R 0.55 deleterious(0.01) benign(0.003) TCGA-41-5651-01 3 178916881 178916881 T G PIK3CA Missense_Mutation p.C90G 0.36 deleterious(0.01) probably_damaging(1) TCGA-41-5651-01 3 183679309 183679309 G A ABCC5 Missense_Mutation p.P790L 0.31 tolerated(0.05) benign(0.005) TCGA-41-5651-01 3 42916203 42916203 G A CYP8B1 Missense_Mutation p.S369F 0.50 deleterious(0.01) benign(0.237) TCGA-41-5651-01 3 52020670 52020670 T C ACY1 Silent p.S192S 0.39 TCGA-41-5651-01 3 9783816 9783816 C T BRPF1 Silent p.S654S 0.43 TCGA-41-5651-01 4 13481054 13481054 C A RAB28 Nonsense_Mutation p.G58* 0.40 TCGA-41-5651-01 4 46966998 46966998 C A GABRA4 Missense_Mutation p.A375S 0.40 tolerated(0.8) benign(0.099) TCGA-41-5651-01 4 7056759 7056759 G T TADA2B Missense_Mutation p.W414L 0.20 deleterious(0) possibly_damaging(0.685) TCGA-41-5651-01 5 137257377 137257377 C G PKD2L2 Missense_Mutation p.Q461E 0.43 tolerated(1) benign(0.228) TCGA-41-5651-01 5 167551889 167551889 A G TENM2 Silent p.G681G 0.29 TCGA-41-5651-01 5 21817224 21817224 C A CDH12 Missense_Mutation p.V278F 0.57 deleterious(0) possibly_damaging(0.729) TCGA-41-5651-01 5 41049447 41049447 A T MROH2B Missense_Mutation p.M479K 0.50 tolerated(0.09) benign(0.173) TCGA-41-5651-01 5 71494424 71494424 G T MAP1B Missense_Mutation p.D1748Y 0.38 probably_damaging(0.909) TCGA-41-5651-01 5 77784735 77784735 C G LHFPL2 Silent p.L224L 0.44 TCGA-41-5651-01 6 106555383 106555383 T C PRDM1 3'UTR 0.34 TCGA-41-5651-01 6 168443352 168443352 C T KIF25 Missense_Mutation p.P314L 0.38 deleterious(0.03) possibly_damaging(0.807) TCGA-41-5651-01 6 32782142 32782142 G C HLA-DOB Missense_Mutation p.L200V 0.41 deleterious(0.03) benign(0.443) TCGA-41-5651-01 6 38840400 38840400 A G DNAH8 Missense_Mutation p.K2143R 0.43 benign(0.074) TCGA-41-5651-01 6 39159464 39159464 C A KCNK5 Silent p.G234G 0.07 TCGA-41-5651-01 6 40360425 40360425 C T LRFN2 Missense_Mutation p.V543M 0.37 deleterious(0.01) possibly_damaging(0.484) TCGA-41-5651-01 6 41121571 41121571 C T TREML1 Missense_Mutation p.E101K 0.41 tolerated(0.07) benign(0.43) TCGA-41-5651-01 6 46658201 46658201 C G TDRD6 Missense_Mutation p.S779C 0.43 deleterious(0) probably_damaging(0.998) TCGA-41-5651-01 7 141896517 141896517 T C RP11-1220K2.2 Silent p.C1511C 0.14 TCGA-41-5651-01 7 147844679 147844679 G A CNTNAP2 Missense_Mutation p.R884Q 0.24 tolerated(0.23) benign(0.428) TCGA-41-5651-01 7 156963055 156963055 G A UBE3C Missense_Mutation p.A85T 0.35 tolerated(0.7) benign(0) TCGA-41-5651-01 7 31014610 31014610 C T GHRHR Silent p.S279S 0.35 TCGA-41-5651-01 7 6628405 6628405 G A ZDHHC4 Missense_Mutation p.R300H 0.29 tolerated(1) benign(0) TCGA-41-5651-01 7 79846874 79846874 G A GNAI1 3'UTR 0.27 TCGA-41-5651-01 7 93113304 93113304 G A CALCR Intron 0.29 TCGA-41-5651-01 8 110454293 110454293 C A PKHD1L1 Missense_Mutation p.T1421K 0.51 tolerated(0.22) benign(0.05) TCGA-41-5651-01 8 120977651 120977651 G T DEPTOR Splice_Site p.X202_splice 0.32 TCGA-41-5651-01 8 132002709 132002709 C T ADCY8 Missense_Mutation p.R347H 0.53 deleterious(0) probably_damaging(0.991) TCGA-41-5651-01 8 24199261 24199261 C T ADAM28 Silent p.G607G 0.36 TCGA-41-5651-01 8 52387699 52387699 C T PXDNL Missense_Mutation p.R176H 0.38 tolerated(0.06) benign(0.344) TCGA-41-5651-01 8 96047748 96047748 G A NDUFAF6 Missense_Mutation p.E122K 0.42 tolerated(0.09) benign(0.217) TCGA-41-5651-01 9 115580093 115580093 C G SNX30 Missense_Mutation p.P153A 0.49 deleterious(0.01) probably_damaging(0.992) TCGA-41-5651-01 9 125239495 125239495 G A OR1J1 Silent p.A237A 0.32 TCGA-41-5651-01 9 139299619 139299619 A G SDCCAG3 Missense_Mutation p.M310T 0.37 tolerated(0.09) possibly_damaging(0.503) TCGA-41-5651-01 9 32430435 32430435 G T ACO1 Missense_Mutation p.G530V 0.44 deleterious(0) probably_damaging(0.986) TCGA-41-5651-01 9 90220082 90220082 C T DAPK1 Silent p.I92I 0.48 TCGA-41-5651-01 X 100646453 100646453 G A RPL36A-HNRNPH2 Missense_Mutation p.V15I 0.28 tolerated_low_confidence(0.27) benign(0.073) TCGA-41-5651-01 X 118238988 118238988 C A KIAA1210 Missense_Mutation p.K345N 0.25 deleterious(0.01) probably_damaging(0.913) TCGA-41-5651-01 X 119059169 119059169 C T NKAP 3'UTR 0.29 TCGA-41-5651-01 X 119562321 119562321 A C LAMP2 3'UTR 0.27 TCGA-41-5651-01 X 12905182 12905182 C A TLR7 Missense_Mutation p.L519I 0.06 tolerated(0.87) benign(0.232) TCGA-41-5651-01 X 131219611 131219611 G A FRMD7 Missense_Mutation p.R215W 0.32 deleterious(0) probably_damaging(0.999) TCGA-41-5651-01 X 1327734 1327734 G C CRLF2 Missense_Mutation p.S49R 0.32 deleterious(0.01) probably_damaging(0.953) TCGA-41-5651-01 X 133941511 133941511 C G FAM122C 5'UTR 0.23 TCGA-41-5651-01 X 149014020 149014020 G T MAGEA8 3'UTR 0.23 TCGA-41-5651-01 X 152818620 152818620 C T ATP2B3 Missense_Mutation p.R651W 0.30 deleterious(0) probably_damaging(0.999) TCGA-41-5651-01 X 23019720 23019720 G A DDX53 Missense_Mutation p.G516R 0.06 deleterious(0) probably_damaging(0.996) TCGA-41-5651-01 X 30577750 30577750 C T CXorf21 Silent p.A241A 0.26 TCGA-41-5651-01 X 3235173 3235173 C T MXRA5 Silent p.P2183P 0.29 TCGA-41-5651-01 X 48839756 48839756 G A GRIPAP1 Missense_Mutation p.R457W 0.24 possibly_damaging(0.899) TCGA-41-5651-01 X 54785423 54785423 C T ITIH6 Missense_Mutation p.V362I 0.36 tolerated(1) benign(0) TCGA-41-5651-01 X 57936065 57936065 C T ZXDA Missense_Mutation p.V264M 0.17 tolerated(0.32) benign(0.003) TCGA-41-5651-01 X 70613222 70613222 A C TAF1 Silent p.G1061G 0.29 TCGA-41-5651-01 X 74291376 74291376 A T ABCB7 Missense_Mutation p.I393K 0.24 deleterious(0.01) possibly_damaging(0.655) TCGA-41-6646-01 10 21185902 21185902 C T NEBL Silent p.T46T 0.50 TCGA-41-6646-01 11 5080175 5080175 C T OR52E2 Missense_Mutation p.R228H 0.22 tolerated(0.43) benign(0.026) TCGA-41-6646-01 11 55681607 55681607 A G OR5W2 Missense_Mutation p.V151A 0.28 tolerated(0.22) benign(0.012) TCGA-41-6646-01 11 58722269 58722269 C A GLYATL1 Nonsense_Mutation p.Y102* 0.31 TCGA-41-6646-01 11 66192332 66192332 C T NPAS4 Silent p.G657G 0.26 TCGA-41-6646-01 11 73020926 73020926 G A ARHGEF17 Missense_Mutation p.V415M 0.40 tolerated_low_confidence(0.94) benign(0.009) TCGA-41-6646-01 12 123661241 123661241 C T MPHOSPH9 Missense_Mutation p.R665H 0.35 tolerated(0.56) benign(0.006) TCGA-41-6646-01 12 21643134 21643134 A G RECQL Silent p.D131D 0.30 TCGA-41-6646-01 13 96578002 96578002 G A UGGT2 Missense_Mutation p.L743F 0.62 tolerated(1) benign(0.014) TCGA-41-6646-01 14 106791250 106791250 A T IGHV3-30 Missense_Mutation p.S36T 0.10 deleterious_low_confidence(0.02) benign(0.07) TCGA-41-6646-01 14 61518523 61518525 ATG - SLC38A6 In_Frame_Del p.M358del 0.36 TCGA-41-6646-01 14 94912695 94912695 C G SERPINA11 Missense_Mutation p.R297T 0.41 tolerated(0.41) benign(0.017) TCGA-41-6646-01 15 20651155 20651155 C G HERC2P3 RNA 0.30 TCGA-41-6646-01 15 31360288 31360288 C T TRPM1 Missense_Mutation p.R113H 0.46 deleterious(0) probably_damaging(0.975) TCGA-41-6646-01 16 56623852 56623852 G C MT3 Intron 0.17 TCGA-41-6646-01 17 14110443 14110443 C A COX10 Missense_Mutation p.S415R 0.33 deleterious(0) probably_damaging(1) TCGA-41-6646-01 17 18708892 18708892 T G TVP23B 3'UTR 0.38 TCGA-41-6646-01 17 29654691 29654691 C T NF1 Nonsense_Mutation p.Q1815* 0.57 TCGA-41-6646-01 17 62859172 62859172 A G LRRC37A3 Intron 0.65 TCGA-41-6646-01 18 19283692 19283692 G A ABHD3 Missense_Mutation p.T60I 0.36 deleterious(0.04) benign(0.002) TCGA-41-6646-01 19 18280055 18280055 C T PIK3R2 Missense_Mutation p.A713V 0.38 deleterious(0.01) probably_damaging(0.919) TCGA-41-6646-01 19 44223317 44223317 C T IRGC Missense_Mutation p.R203W 0.28 deleterious(0) probably_damaging(0.994) TCGA-41-6646-01 19 47876058 47876058 G A DHX34 Missense_Mutation p.V614I 0.42 tolerated(0.12) probably_damaging(0.98) TCGA-41-6646-01 19 52004890 52004890 G A SIGLEC12 Missense_Mutation p.T33M 0.29 tolerated(0.12) probably_damaging(0.924) TCGA-41-6646-01 19 53958627 53958627 G A ZNF761 RNA 0.04 TCGA-41-6646-01 19 55147101 55147101 G T LILRB1 Intron 0.24 TCGA-41-6646-01 19 55597484 55597484 G A EPS8L1 Missense_Mutation p.G525E 0.37 deleterious(0) probably_damaging(1) TCGA-41-6646-01 1 153941905 153941905 G A CREB3L4 Missense_Mutation p.V173I 0.23 tolerated(0.36) benign(0.002) TCGA-41-6646-01 1 179335574 179335574 T C AXDND1 5'UTR 0.25 TCGA-41-6646-01 1 179886766 179886766 C T TOR1AIP1 Nonsense_Mutation p.Q382* 0.11 TCGA-41-6646-01 1 203014509 203014509 G A PPFIA4 Missense_Mutation p.R227Q 0.35 tolerated(0.3) benign(0.007) TCGA-41-6646-01 1 205589407 205589407 G A ELK4 Missense_Mutation p.S256L 0.32 tolerated(0.19) benign(0.001) TCGA-41-6646-01 1 228294495 228294495 C T MRPL55 Missense_Mutation p.R154H 0.36 tolerated(0.07) benign(0.048) TCGA-41-6646-01 1 237632437 237632437 G A RYR2 Missense_Mutation p.G553D 0.33 possibly_damaging(0.542) TCGA-41-6646-01 1 248789661 248789661 C T OR2T11 Missense_Mutation p.V257M 0.64 tolerated(1) benign(0.357) TCGA-41-6646-01 20 57767405 57767405 C T ZNF831 Missense_Mutation p.T444M 0.30 tolerated(1) benign(0.003) TCGA-41-6646-01 21 11039173 11039173 T C BAGE2 RNA 0.08 TCGA-41-6646-01 22 32445981 32445981 C T SLC5A1 Nonsense_Mutation p.R63* 0.57 TCGA-41-6646-01 22 37906263 37906263 G A CARD10 Missense_Mutation p.R289W 0.50 deleterious(0.02) benign(0.028) TCGA-41-6646-01 2 110922207 110922207 G A NPHP1 Nonsense_Mutation p.R277* 0.31 TCGA-41-6646-01 2 133547632 133547632 G A NCKAP5 Silent p.S352S 0.27 TCGA-41-6646-01 2 173356005 173356005 C T ITGA6 Silent p.D945D 0.09 TCGA-41-6646-01 2 198950624 198950624 C T PLCL1 Missense_Mutation p.R795C 0.28 deleterious(0) probably_damaging(1) TCGA-41-6646-01 3 168269695 168269695 C T MIR551B RNA 0.30 TCGA-41-6646-01 3 169587610 169587610 G A LRRC31 5'UTR 0.28 TCGA-41-6646-01 3 89478302 89478302 G A EPHA3 Silent p.L707L 0.34 TCGA-41-6646-01 4 141313760 141313760 A - CLGN Frame_Shift_Del p.C491Vfs*6 0.29 TCGA-41-6646-01 4 155533209 155533209 T C FGG Missense_Mutation p.I90V 0.21 tolerated(0.14) benign(0.005) TCGA-41-6646-01 4 168155201 168155201 T A SPOCK3 Nonsense_Mutation p.K42* 0.46 TCGA-41-6646-01 4 37962337 37962337 C T PTTG2 Silent p.T94T 0.06 TCGA-41-6646-01 4 77661478 77661478 C T SHROOM3 Missense_Mutation p.R718W 0.41 deleterious(0.03) benign(0.004) TCGA-41-6646-01 4 83348672 83348672 T C HNRNPDL Missense_Mutation p.R274G 0.28 deleterious(0) probably_damaging(0.982) TCGA-41-6646-01 5 151131276 151131276 T C ATOX1 Missense_Mutation p.N24S 0.25 tolerated(0.23) benign(0.015) TCGA-41-6646-01 5 17354466 17354466 C T CTD-2139B15.2 RNA 0.35 TCGA-41-6646-01 5 36195277 36195279 TCT - NADK2 In_Frame_Del p.E432del 0.26 TCGA-41-6646-01 6 42231242 42231242 G A TRERF1 Missense_Mutation p.P567L 0.29 deleterious_low_confidence(0.05) possibly_damaging(0.726) TCGA-41-6646-01 7 111540437 111540437 A C DOCK4 Missense_Mutation p.H491Q 0.21 deleterious(0) probably_damaging(0.997) TCGA-41-6646-01 7 2412424 2412424 C G EIF3B Missense_Mutation p.L602V 0.32 tolerated(0.1) possibly_damaging(0.757) TCGA-41-6646-01 7 99764391 99764391 A T GAL3ST4 Missense_Mutation p.S55T 0.29 tolerated(0.22) benign(0.036) TCGA-41-6646-01 8 110308796 110308796 G C NUDCD1 Missense_Mutation p.D92E 0.35 tolerated(0.2) benign(0.145) TCGA-41-6646-01 8 120608105 120608105 C T ENPP2 Silent p.A370A 0.22 TCGA-41-6646-01 8 1581155 1581155 G A DLGAP2 Missense_Mutation p.E505K 0.27 deleterious(0.01) benign(0.359) TCGA-41-6646-01 8 17422682 17422682 G A SLC7A2 3'UTR 0.33 TCGA-41-6646-01 9 111822726 111822726 T A TMEM245 Nonsense_Mutation p.K544* 0.36 TCGA-41-6646-01 9 140059529 140059529 C T GRIN1 Intron 0.37 TCGA-41-6646-01 9 86258531 86258531 C T IDNK Missense_Mutation p.R134C 0.29 deleterious(0) probably_damaging(0.999) TCGA-41-6646-01 X 35985796 35985796 G A CXorf22 Missense_Mutation p.R554H 0.56 tolerated(0.53) benign(0.391) TCGA-41-6646-01 X 73040808 73040808 T C XIST RNA 0.44 TCGA-41-6646-01 X 99662130 99662131 GA - PCDH19 Frame_Shift_Del p.S489Lfs*33 0.40 TCGA-4W-AA9R-01 10 28030399 28030399 G A MKX Missense_Mutation p.R75W 0.72 deleterious(0) possibly_damaging(0.895) TCGA-4W-AA9R-01 10 29822154 29822154 G A SVIL Missense_Mutation p.T381M 0.69 tolerated_low_confidence(0.09) benign(0.009) TCGA-4W-AA9R-01 10 32344897 32344897 G A KIF5B Missense_Mutation p.A2V 0.14 tolerated(0.07) benign(0.278) TCGA-4W-AA9R-01 10 5416123 5416123 C T UCN3 Missense_Mutation p.A147V 0.64 deleterious(0) probably_damaging(0.923) TCGA-4W-AA9R-01 10 89725139 89725139 T - PTEN Frame_Shift_Del p.D375Ifs*41 0.29 TCGA-4W-AA9R-01 11 1276673 1276673 C T MUC5B Silent p.S5317S 0.29 TCGA-4W-AA9R-01 11 55798527 55798527 T C OR5AS1 Silent p.F211F 0.37 TCGA-4W-AA9R-01 11 65629440 65629440 G A MUS81 Missense_Mutation p.G125E 0.28 tolerated(0.16) benign(0.097) TCGA-4W-AA9R-01 11 67759274 67759274 G T UNC93B1 Silent p.R512R 0.44 TCGA-4W-AA9R-01 11 6891550 6891550 G A OR10A2 Missense_Mutation p.G189R 0.46 tolerated(0.39) benign(0.365) TCGA-4W-AA9R-01 12 101750424 101750424 A G UTP20 Silent p.K1829K 0.39 TCGA-4W-AA9R-01 12 50291838 50291838 C T FAIM2 Missense_Mutation p.G83R 0.42 deleterious(0.02) benign(0.413) TCGA-4W-AA9R-01 12 52681808 52681808 G A KRT81 Missense_Mutation p.T287I 0.28 deleterious(0.01) benign(0.009) TCGA-4W-AA9R-01 12 57864433 57864433 G A GLI1 Missense_Mutation p.R637Q 0.54 deleterious(0) probably_damaging(0.992) TCGA-4W-AA9R-01 12 6059030 6059030 G A VWF Silent p.N2725N 0.38 TCGA-4W-AA9R-01 12 675183 675183 G A NINJ2 Silent p.T111T 0.13 TCGA-4W-AA9R-01 13 32907409 32907413 ATCTT - BRCA2 Frame_Shift_Del p.S599* 0.27 TCGA-4W-AA9R-01 14 106174148 106174148 G A IGHA1 Missense_Mutation p.P214L 0.34 deleterious(0.02) benign(0.303) TCGA-4W-AA9R-01 14 106208387 106208387 C A IGHG1 Missense_Mutation p.K171N 0.38 tolerated(0.28) benign(0.009) TCGA-4W-AA9R-01 14 106208446 106208446 C T IGHG1 Missense_Mutation p.E152K 0.39 deleterious(0.02) benign(0.399) TCGA-4W-AA9R-01 15 21071265 21071265 G T POTEB2 Missense_Mutation p.P116T 0.13 tolerated(0.32) possibly_damaging(0.827) TCGA-4W-AA9R-01 15 28370228 28370228 C T HERC2 Missense_Mutation p.R4305H 0.37 possibly_damaging(0.455) TCGA-4W-AA9R-01 15 40510693 40510693 C T BUB1B Silent p.L963L 0.31 TCGA-4W-AA9R-01 15 42438040 42438040 G A PLA2G4F Silent p.T532T 0.35 TCGA-4W-AA9R-01 15 50788243 50788243 T C USP8 Missense_Mutation p.S953P 0.33 deleterious(0) probably_damaging(0.995) TCGA-4W-AA9R-01 15 90766967 90766967 C T SEMA4B Silent p.S346S 0.50 TCGA-4W-AA9R-01 16 23226420 23226420 T C SCNN1G Missense_Mutation p.L527P 0.32 deleterious(0) probably_damaging(1) TCGA-4W-AA9R-01 16 31373405 31373405 G A ITGAX Missense_Mutation p.V366I 0.44 tolerated(0.12) benign(0.002) TCGA-4W-AA9R-01 16 3724339 3724339 C T TRAP1 Splice_Site p.X348_splice 0.33 TCGA-4W-AA9R-01 16 49315138 49315138 C T CBLN1 Missense_Mutation p.R80H 0.09 tolerated(0.05) probably_damaging(0.969) TCGA-4W-AA9R-01 17 46799817 46799817 C T PRAC1 5'UTR 0.41 TCGA-4W-AA9R-01 17 5253797 5253797 C T RABEP1 Missense_Mutation p.T279M 0.66 deleterious(0) probably_damaging(0.999) TCGA-4W-AA9R-01 17 60348729 60348729 C T TBC1D3P2 RNA 0.37 TCGA-4W-AA9R-01 17 7460693 7460693 C A TNFSF12 Intron 0.36 TCGA-4W-AA9R-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.58 deleterious(0) probably_damaging(1) TCGA-4W-AA9R-01 17 76705794 76705794 C T CYTH1 Missense_Mutation p.E15K 0.41 tolerated(0.31) benign(0.003) TCGA-4W-AA9R-01 18 28935066 28935066 G T DSG1 Silent p.G969G 0.39 TCGA-4W-AA9R-01 18 6958578 6958578 G A LAMA1 Missense_Mutation p.S2621F 0.11 deleterious(0.01) probably_damaging(0.981) TCGA-4W-AA9R-01 18 7774169 7774169 G A PTPRM Silent p.P32P 0.73 TCGA-4W-AA9R-01 19 15065037 15065037 T C SLC1A6 Missense_Mutation p.D425G 0.16 deleterious(0) probably_damaging(0.994) TCGA-4W-AA9R-01 19 22605015 22605015 G T ZNF98 Silent p.P4P 0.27 TCGA-4W-AA9R-01 19 36336318 36336318 C T NPHS1 Missense_Mutation p.A628T 0.41 tolerated(0.17) benign(0.009) TCGA-4W-AA9R-01 19 41737126 41737126 C T AXL Missense_Mutation p.R236C 0.25 tolerated(0.06) possibly_damaging(0.697) TCGA-4W-AA9R-01 19 50208507 50208507 C T CPT1C Nonsense_Mutation p.Q306* 0.15 TCGA-4W-AA9R-01 19 55494379 55494379 C T NLRP2 Missense_Mutation p.P438L 0.30 tolerated(0.05) benign(0.086) TCGA-4W-AA9R-01 19 5843987 5843987 G A FUT3 Silent p.D288D 0.27 TCGA-4W-AA9R-01 19 7704643 7704643 G A STXBP2 Missense_Mutation p.E66K 0.27 deleterious(0) possibly_damaging(0.639) TCGA-4W-AA9R-01 19 9013881 9013881 T C MUC16 Missense_Mutation p.T12837A 0.21 possibly_damaging(0.552) TCGA-4W-AA9R-01 19 9048469 9048469 A G MUC16 Silent p.S11054S 0.34 TCGA-4W-AA9R-01 1 151373730 151373730 G A PSMB4 Missense_Mutation p.V198I 0.40 tolerated(0.14) benign(0.001) TCGA-4W-AA9R-01 1 158609421 158609421 T A SPTA1 Missense_Mutation p.N1644I 0.36 deleterious(0) probably_damaging(1) TCGA-4W-AA9R-01 1 159847189 159847189 C T CCDC19 Missense_Mutation p.A370T 0.37 tolerated(0.12) benign(0.05) TCGA-4W-AA9R-01 1 169824996 169824996 G A SCYL3 Missense_Mutation p.T472M 0.41 tolerated(0.47) benign(0.003) TCGA-4W-AA9R-01 1 192780536 192780536 A G RGS2 Missense_Mutation p.N149S 0.36 deleterious(0) probably_damaging(0.932) TCGA-4W-AA9R-01 1 248551179 248551179 G A OR2T6 Silent p.G90G 0.33 TCGA-4W-AA9R-01 1 55059614 55059614 G A ACOT11 Missense_Mutation p.V125M 0.43 deleterious(0) probably_damaging(0.997) TCGA-4W-AA9R-01 1 93299213 93299213 G A RPL5 Missense_Mutation p.C62Y 0.31 deleterious(0.01) probably_damaging(0.996) TCGA-4W-AA9R-01 20 43058249 43058249 G A HNF4A Missense_Mutation p.V457I 0.50 tolerated_low_confidence(0.38) benign(0.001) TCGA-4W-AA9R-01 20 57829804 57829804 C A ZNF831 3'UTR 0.58 TCGA-4W-AA9R-01 20 5903440 5903440 C T CHGB Missense_Mutation p.S217L 0.52 tolerated(0.59) benign(0.016) TCGA-4W-AA9R-01 22 38329071 38329071 C T MICALL1 Missense_Mutation p.R754C 0.44 deleterious(0) probably_damaging(0.982) TCGA-4W-AA9R-01 2 163369183 163369183 G A KCNH7 Silent p.D298D 0.30 TCGA-4W-AA9R-01 2 178704994 178704994 G A PDE11A Missense_Mutation p.P495L 0.44 deleterious(0.02) probably_damaging(0.998) TCGA-4W-AA9R-01 2 201478598 201478598 C T AOX1 Missense_Mutation p.A507V 0.52 tolerated(0.08) probably_damaging(0.966) TCGA-4W-AA9R-01 2 73470257 73470257 G A CCT7 Silent p.L131L 0.47 TCGA-4W-AA9R-01 2 99256334 99256334 G A MGAT4A Missense_Mutation p.A420V 0.26 deleterious(0.02) benign(0.049) TCGA-4W-AA9R-01 3 10858144 10858144 G A SLC6A11 Missense_Mutation p.G65E 0.50 deleterious(0) probably_damaging(1) TCGA-4W-AA9R-01 3 110837677 110837677 C T PVRL3 Missense_Mutation p.T226M 0.20 deleterious(0) probably_damaging(0.999) TCGA-4W-AA9R-01 3 111766712 111766712 G A TMPRSS7 Missense_Mutation p.R160H 0.54 deleterious(0.02) probably_damaging(0.988) TCGA-4W-AA9R-01 3 111887771 111887771 G A SLC9C1 Nonsense_Mutation p.R1064* 0.13 TCGA-4W-AA9R-01 3 169644784 169644784 C T SAMD7 Missense_Mutation p.T245M 0.58 deleterious(0.02) benign(0.18) TCGA-4W-AA9R-01 3 38739985 38739985 G A SCN10A Missense_Mutation p.R1576C 0.15 deleterious(0) probably_damaging(0.998) TCGA-4W-AA9R-01 3 50356405 50356405 C T HYAL2 Silent p.A331A 0.13 TCGA-4W-AA9R-01 3 98110425 98110425 A G OR5K3 Missense_Mutation p.R306G 0.59 tolerated(0.34) benign(0) TCGA-4W-AA9R-01 4 122749607 122749607 C T BBS7 Missense_Mutation p.E614K 0.05 tolerated(0.19) possibly_damaging(0.58) TCGA-4W-AA9R-01 4 1993280 1993280 T G NELFA Silent p.R136R 0.27 TCGA-4W-AA9R-01 4 54231435 54231435 G C SCFD2 Missense_Mutation p.S225C 0.16 tolerated(0.1) possibly_damaging(0.778) TCGA-4W-AA9R-01 4 54232124 54232124 G A SCFD2 5'UTR 0.47 TCGA-4W-AA9R-01 4 54232197 54232197 G C SCFD2 5'UTR 0.53 TCGA-4W-AA9R-01 5 145442270 145442270 C T SH3RF2 3'UTR 0.29 TCGA-4W-AA9R-01 5 156533881 156533881 C T HAVCR2 Missense_Mutation p.V51I 0.60 tolerated(0.08) benign(0.034) TCGA-4W-AA9R-01 6 151151934 151151934 G A PLEKHG1 Missense_Mutation p.V563M 0.33 tolerated(0.15) possibly_damaging(0.66) TCGA-4W-AA9R-01 6 154412549 154412549 G A OPRM1 Missense_Mutation p.R462H 0.44 deleterious(0) benign(0.399) TCGA-4W-AA9R-01 6 29394847 29394847 G A OR11A1 Missense_Mutation p.S191L 0.57 deleterious(0) possibly_damaging(0.534) TCGA-4W-AA9R-01 6 401644 401644 C T IRF4 Silent p.D322D 0.41 TCGA-4W-AA9R-01 6 46827258 46827258 G A GPR116 Silent p.H794H 0.40 TCGA-4W-AA9R-01 6 46856193 46856193 G A GPR116 Silent p.I69I 0.47 TCGA-4W-AA9R-01 6 51613190 51613190 G T PKHD1 Missense_Mutation p.T3075N 0.37 tolerated(0.37) benign(0.008) TCGA-4W-AA9R-01 6 76623985 76623985 C T MYO6 Silent p.I1215I 0.19 TCGA-4W-AA9R-01 6 9933491 9933491 C T OFCC1 Silent p.S21S 0.29 TCGA-4W-AA9R-01 7 150555881 150555881 T C AOC1 Missense_Mutation p.M534T 0.18 tolerated(0.18) benign(0.017) TCGA-4W-AA9R-01 7 151900114 151900114 C T KMT2C Missense_Mutation p.E1333K 0.27 probably_damaging(0.984) TCGA-4W-AA9R-01 7 538143 538143 T C PDGFA 3'UTR 0.22 TCGA-4W-AA9R-01 7 73646405 73646405 C T RFC2 3'UTR 0.28 TCGA-4W-AA9R-01 7 82538249 82538249 G T PCLO Silent p.R4461R 0.34 TCGA-4W-AA9R-01 7 98574207 98574207 C T TRRAP Silent p.S2680S 0.12 TCGA-4W-AA9R-01 8 142450415 142450415 C T CTD-3064M3.7 3'Flank 0.24 TCGA-4W-AA9R-01 8 6378750 6378750 C T ANGPT2 Missense_Mutation p.D250N 0.09 deleterious(0.04) benign(0.088) TCGA-4W-AA9R-01 9 132631971 132631971 G A USP20 Silent p.T471T 0.43 TCGA-4W-AA9R-01 9 73426095 73426095 C T TRPM3 Intron 0.26 TCGA-4W-AA9R-01 X 151821469 151821469 G A GABRQ Missense_Mutation p.D542N 0.16 tolerated(0.31) benign(0.002) TCGA-4W-AA9R-01 X 53616712 53616712 G A HUWE1 Missense_Mutation p.A1419V 0.17 benign(0.059) TCGA-4W-AA9S-01 10 13375863 13375863 G A SEPHS1 Silent p.L172L 0.57 TCGA-4W-AA9S-01 10 50819421 50819421 G C SLC18A3 Missense_Mutation p.R212P 0.44 deleterious(0.01) probably_damaging(0.954) TCGA-4W-AA9S-01 10 50820227 50820227 G A SLC18A3 Missense_Mutation p.E481K 0.24 tolerated(0.06) probably_damaging(0.988) TCGA-4W-AA9S-01 11 104776183 104776183 A G RP11-693N9.2 RNA 0.41 TCGA-4W-AA9S-01 11 4824947 4824947 C T OR52R1 Missense_Mutation p.V222M 0.39 tolerated(0.12) benign(0.14) TCGA-4W-AA9S-01 11 62554237 62554237 C T TAF6L Silent p.A446A 0.16 TCGA-4W-AA9S-01 11 66191328 66191328 C T NPAS4 Missense_Mutation p.R323C 0.40 deleterious(0) probably_damaging(0.994) TCGA-4W-AA9S-01 11 71249422 71249422 C G KRTAP5-8 Silent p.S107S 0.34 TCGA-4W-AA9S-01 11 71906453 71906453 G A FOLR1 Missense_Mutation p.D103N 0.39 deleterious(0.03) benign(0.445) TCGA-4W-AA9S-01 12 129559552 129559552 A T TMEM132D Nonsense_Mutation p.L723* 0.42 TCGA-4W-AA9S-01 12 70986321 70986321 G C PTPRB Silent p.P507P 0.37 TCGA-4W-AA9S-01 14 106805226 106805226 C T IGHV4-31 Missense_Mutation p.V113M 0.29 tolerated_low_confidence(0.25) benign(0.173) TCGA-4W-AA9S-01 14 20389104 20389104 G T OR4K5 Silent p.V113V 0.35 TCGA-4W-AA9S-01 14 20444585 20444585 C T OR4K15 Missense_Mutation p.T303M 0.17 deleterious(0.01) probably_damaging(0.996) TCGA-4W-AA9S-01 14 21963473 21963473 G A TOX4 Missense_Mutation p.G576D 0.39 deleterious(0) probably_damaging(0.92) TCGA-4W-AA9S-01 14 24657963 24657963 G T IPO4 Silent p.R11R 0.37 TCGA-4W-AA9S-01 14 68265019 68265019 T C ZFYVE26 Missense_Mutation p.K654E 0.36 tolerated(0.56) benign(0.003) TCGA-4W-AA9S-01 14 74823752 74823752 C T VRTN Missense_Mutation p.A89V 0.08 deleterious(0) probably_damaging(0.997) TCGA-4W-AA9S-01 15 102197997 102197997 A C TARSL2 Nonsense_Mutation p.Y712* 0.39 TCGA-4W-AA9S-01 15 45968308 45968308 C T SQRDL Nonsense_Mutation p.R222* 0.33 TCGA-4W-AA9S-01 15 57565349 57565349 G T TCF12 Nonsense_Mutation p.E623* 0.18 TCGA-4W-AA9S-01 16 3293884 3293884 G A MEFV Silent p.L590L 0.33 TCGA-4W-AA9S-01 16 4933647 4933647 G T PPL Missense_Mutation p.S1670Y 0.29 deleterious(0) probably_damaging(0.971) TCGA-4W-AA9S-01 17 12649361 12649361 C T MYOCD Missense_Mutation p.P366L 0.14 tolerated(0.05) benign(0.113) TCGA-4W-AA9S-01 17 29667552 29667552 G A NF1 Nonsense_Mutation p.W2317* 0.35 TCGA-4W-AA9S-01 18 19154667 19154667 T C ESCO1 Silent p.K46K 0.20 TCGA-4W-AA9S-01 19 41128384 41128384 G A LTBP4 Missense_Mutation p.R1165H 0.19 tolerated(0.28) probably_damaging(0.97) TCGA-4W-AA9S-01 19 53015191 53015191 T G ZNF578 Silent p.T519T 0.11 TCGA-4W-AA9S-01 19 53344539 53344539 G A ZNF468 Silent p.F336F 0.08 TCGA-4W-AA9S-01 19 5914466 5914466 T C CAPS Missense_Mutation p.S17P 0.32 deleterious(0.02) benign(0.049) TCGA-4W-AA9S-01 1 158516987 158516987 C A OR6Y1 Missense_Mutation p.K303N 0.51 deleterious(0) benign(0.38) TCGA-4W-AA9S-01 1 163044497 163044497 C T RGS4 3'UTR 0.54 TCGA-4W-AA9S-01 1 186072783 186072783 C T HMCN1 Nonsense_Mutation p.R3585* 0.23 TCGA-4W-AA9S-01 1 23762409 23762536 1:23762409-23762536 - ASAP3 large deletion p.X524_splice 0.17 TCGA-4W-AA9S-01 1 247597412 247597412 C T NLRP3 Missense_Mutation p.R779C 0.29 tolerated(0.06) possibly_damaging(0.776) TCGA-4W-AA9S-01 20 20552174 20552174 G A RALGAPA2 Silent p.D1028D 0.32 TCGA-4W-AA9S-01 20 43932987 43932987 C T MATN4 Missense_Mutation p.R175H 0.22 probably_damaging(0.993) TCGA-4W-AA9S-01 20 5753598 5753598 C T C20orf196 Silent p.Y29Y 0.33 TCGA-4W-AA9S-01 20 61444641 61444641 A G OGFR Silent p.P558P 0.11 TCGA-4W-AA9S-01 21 15746469 15746469 G C HSPA13 Silent p.V295V 0.05 TCGA-4W-AA9S-01 21 38569970 38569970 C G TTC3 Missense_Mutation p.H1893Q 0.25 tolerated(0.05) possibly_damaging(0.845) TCGA-4W-AA9S-01 21 43496188 43496188 G A UMODL1 Missense_Mutation p.V51M 0.24 tolerated(0.06) possibly_damaging(0.791) TCGA-4W-AA9S-01 21 47355174 47355174 C T PCBP3 Silent p.D288D 0.23 TCGA-4W-AA9S-01 22 18364023 18364023 G A MICAL3 Intron 0.21 TCGA-4W-AA9S-01 2 120658320 120658324 TGGAG - PTPN4 Frame_Shift_Del p.G235Dfs*9 0.27 TCGA-4W-AA9S-01 2 136555599 136555599 C T LCT Missense_Mutation p.R1659Q 0.23 deleterious(0.03) probably_damaging(0.997) TCGA-4W-AA9S-01 2 163374383 163374383 T C KCNH7 Missense_Mutation p.D250G 0.38 tolerated(0.22) benign(0.003) TCGA-4W-AA9S-01 2 190559767 190559767 G A ANKAR Nonsense_Mutation p.W456* 0.31 TCGA-4W-AA9S-01 2 226447601 226447601 G A NYAP2 Missense_Mutation p.A490T 0.45 tolerated(0.26) benign(0.355) TCGA-4W-AA9S-01 3 108572725 108572725 C G TRAT1 3'UTR 0.46 TCGA-4W-AA9S-01 3 133305442 133305442 G A CDV3 Missense_Mutation p.V168M 0.33 deleterious(0.04) possibly_damaging(0.615) TCGA-4W-AA9S-01 3 170244459 170244459 C T SLC7A14 Silent p.V89V 0.43 TCGA-4W-AA9S-01 4 178281689 178281689 G A NEIL3 Missense_Mutation p.R498H 0.33 tolerated(0.58) benign(0.001) TCGA-4W-AA9S-01 4 7666162 7666162 G A SORCS2 Silent p.G345G 0.38 TCGA-4W-AA9S-01 4 81967131 81967131 G A BMP3 Missense_Mutation p.D186N 0.43 tolerated(1) benign(0.01) TCGA-4W-AA9S-01 4 9785061 9785061 C G DRD5 Missense_Mutation p.P470A 0.17 deleterious(0.02) possibly_damaging(0.899) TCGA-4W-AA9S-01 5 156381626 156381626 G A TIMD4 Missense_Mutation p.A67V 0.41 deleterious(0.01) benign(0.081) TCGA-4W-AA9S-01 5 45262056 45262056 G A HCN1 Silent p.D880D 0.40 TCGA-4W-AA9S-01 6 87725248 87725248 G A HTR1E Missense_Mutation p.V66M 0.30 deleterious(0.03) probably_damaging(1) TCGA-4W-AA9S-01 7 107642017 107642017 C T LAMB1 Missense_Mutation p.V67I 0.17 tolerated(0.07) benign(0.127) TCGA-4W-AA9S-01 7 12728303 12728303 T C ARL4A Silent p.L142L 0.27 TCGA-4W-AA9S-01 7 95499216 95499216 C T DYNC1I1 Silent p.G149G 0.26 TCGA-4W-AA9S-01 8 144940452 144940452 C T EPPK1 Missense_Mutation p.A2324T 0.02 probably_damaging(0.992) TCGA-4W-AA9S-01 8 28574643 28574643 G A EXTL3 Missense_Mutation p.S356N 0.51 tolerated(0.51) benign(0.044) TCGA-4W-AA9S-01 8 2976048 2976048 C T CSMD1 Silent p.S2101S 0.21 TCGA-4W-AA9S-01 8 53079456 53079456 C T ST18 Missense_Mutation p.R387H 0.25 deleterious(0) probably_damaging(0.986) TCGA-4W-AA9S-01 9 86451889 86451889 T G KIF27 3'UTR 0.34 TCGA-4W-AA9S-01 X 2933117 2933117 C T ARSH Silent p.S149S 0.79 TCGA-4W-AA9T-01 10 28250531 28250531 T C ARMC4 Missense_Mutation p.Y451C 0.12 deleterious(0) probably_damaging(0.998) TCGA-4W-AA9T-01 10 89720702 89720702 G T PTEN Nonsense_Mutation p.E285* 0.33 TCGA-4W-AA9T-01 11 102709964 102709964 G A MMP3 Missense_Mutation p.R316C 0.19 deleterious(0) probably_damaging(1) TCGA-4W-AA9T-01 11 116655109 116655109 C T ZNF259 Silent p.G292G 0.24 TCGA-4W-AA9T-01 11 132204993 132204993 G A NTM Missense_Mutation p.V341I 0.21 tolerated(0.42) benign(0.001) TCGA-4W-AA9T-01 12 101576622 101576622 G A SLC5A8 Missense_Mutation p.S375L 0.26 tolerated(0.09) benign(0.032) TCGA-4W-AA9T-01 12 66935617 66935617 G A GRIP1 Missense_Mutation p.R84W 0.30 deleterious(0) probably_damaging(0.969) TCGA-4W-AA9T-01 12 79693175 79693175 G A SYT1 Silent p.S218S 0.35 TCGA-4W-AA9T-01 14 105408731 105408731 C T AHNAK2 Missense_Mutation p.A4353T 0.27 benign(0.436) TCGA-4W-AA9T-01 14 21867787 21867787 G A CHD8 Missense_Mutation p.S1632L 0.25 deleterious(0) benign(0.381) TCGA-4W-AA9T-01 14 47120933 47120933 G A RPL10L Missense_Mutation p.R3C 0.20 deleterious(0.01) benign(0.118) TCGA-4W-AA9T-01 15 23014497 23014497 C T NIPA2 Silent p.A76A 0.21 TCGA-4W-AA9T-01 16 84270938 84270938 C T KCNG4 Missense_Mutation p.A52T 0.26 tolerated(0.3) benign(0.004) TCGA-4W-AA9T-01 17 39768562 39768562 G A KRT16 Missense_Mutation p.R127C 0.22 deleterious(0.03) possibly_damaging(0.67) TCGA-4W-AA9T-01 17 4351524 4351524 C T SPNS3 Silent p.A232A 0.30 TCGA-4W-AA9T-01 17 54872471 54872471 G A C17orf67 Missense_Mutation p.P76L 0.24 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-4W-AA9T-01 17 7369226 7369226 C T ZBTB4 Missense_Mutation p.V299M 0.23 possibly_damaging(0.868) TCGA-4W-AA9T-01 17 76045703 76045703 C G TNRC6C Missense_Mutation p.T187S 0.25 deleterious(0) possibly_damaging(0.61) TCGA-4W-AA9T-01 18 2891037 2891037 G A EMILIN2 Silent p.P304P 0.16 TCGA-4W-AA9T-01 18 6873483 6873483 C T ARHGAP28 Missense_Mutation p.R185C 0.19 tolerated(0.26) benign(0.02) TCGA-4W-AA9T-01 19 16024701 16024701 C T CYP4F11 Silent p.A472A 0.19 TCGA-4W-AA9T-01 19 41450625 41450625 G C AC092071.1 5'Flank 0.24 TCGA-4W-AA9T-01 19 50792885 50792885 C T MYH14 Missense_Mutation p.R1649W 0.17 deleterious(0) probably_damaging(0.998) TCGA-4W-AA9T-01 19 57641846 57641846 C T USP29 Silent p.A601A 0.14 TCGA-4W-AA9T-01 19 5866628 5866628 G A FUT5 Missense_Mutation p.A370V 0.25 deleterious(0.02) possibly_damaging(0.723) TCGA-4W-AA9T-01 1 152800131 152800131 C T LCE1A Silent p.S61S 0.07 TCGA-4W-AA9T-01 1 179460856 179460856 T C AXDND1 Missense_Mutation p.S759P 0.22 deleterious(0) possibly_damaging(0.543) TCGA-4W-AA9T-01 1 247978808 247978808 G A OR14A16 Missense_Mutation p.T75M 0.19 deleterious(0) possibly_damaging(0.908) TCGA-4W-AA9T-01 1 40980724 40980724 G A EXO5 Missense_Mutation p.G170R 0.20 deleterious(0) probably_damaging(0.979) TCGA-4W-AA9T-01 20 44664476 44664476 G A SLC12A5 Missense_Mutation p.V137I 0.10 tolerated(0.07) possibly_damaging(0.797) TCGA-4W-AA9T-01 20 62046322 62046322 C T KCNQ2 Missense_Mutation p.G487R 0.27 deleterious(0.01) possibly_damaging(0.845) TCGA-4W-AA9T-01 21 37617481 37617481 G A DOPEY2 Nonsense_Mutation p.W1068* 0.24 TCGA-4W-AA9T-01 22 17072431 17072431 C T CCT8L2 Missense_Mutation p.R337H 0.24 tolerated(0.51) benign(0.003) TCGA-4W-AA9T-01 2 11780470 11780470 G A GREB1 Missense_Mutation p.V1914I 0.31 deleterious(0) probably_damaging(0.997) TCGA-4W-AA9T-01 2 179399885 179399885 A G TTN Silent p.Y33819Y 0.21 TCGA-4W-AA9T-01 2 191236153 191236153 G C INPP1 3'UTR 0.19 TCGA-4W-AA9T-01 2 238280852 238280852 G A COL6A3 Missense_Mutation p.R1270W 0.27 probably_damaging(1) TCGA-4W-AA9T-01 2 96789925 96789926 - GATTCC ASTL In_Frame_Ins p.E319_S320dup 0.25 TCGA-4W-AA9T-01 3 128077129 128077129 G A EEFSEC Missense_Mutation p.G505R 0.19 deleterious(0) probably_damaging(0.945) TCGA-4W-AA9T-01 3 12858462 12858462 C T CAND2 Silent p.D677D 0.42 TCGA-4W-AA9T-01 3 38043918 38043918 C G VILL Nonsense_Mutation p.S504* 0.23 TCGA-4W-AA9T-01 4 70596224 70596224 C T SULT1B1 Missense_Mutation p.R258H 0.38 deleterious(0.02) probably_damaging(0.998) TCGA-4W-AA9T-01 5 101593712 101593712 G A SLCO4C1 Missense_Mutation p.T403I 0.19 deleterious(0.02) possibly_damaging(0.566) TCGA-4W-AA9T-01 5 140308619 140308619 C T PCDHAC1 Silent p.C714C 0.20 TCGA-4W-AA9T-01 5 156349137 156349137 C T TIMD4 Missense_Mutation p.A329T 0.26 tolerated(0.14) benign(0.044) TCGA-4W-AA9T-01 5 168189571 168189571 C T SLIT3 Missense_Mutation p.S528N 0.31 tolerated(0.18) benign(0.006) TCGA-4W-AA9T-01 6 130761818 130761818 G A TMEM200A Nonsense_Mutation p.W84* 0.36 TCGA-4W-AA9T-01 6 160913846 160913846 G T LPAL2 RNA 0.37 TCGA-4W-AA9T-01 6 25420388 25420388 C T LRRC16A Missense_Mutation p.T62I 0.18 deleterious(0.01) benign(0.183) TCGA-4W-AA9T-01 6 73102486 73102486 G A RIMS1 Missense_Mutation p.R1531H 0.42 deleterious(0) probably_damaging(0.988) TCGA-4W-AA9T-01 7 100280981 100280981 C T GIGYF1 Silent p.Q713Q 0.19 TCGA-4W-AA9T-01 7 127253114 127253114 C T PAX4 Missense_Mutation p.R218H 0.18 deleterious(0) probably_damaging(0.949) TCGA-4W-AA9T-01 7 144062413 144062413 A G ARHGEF5 Missense_Mutation p.D884G 0.15 deleterious(0) benign(0.342) TCGA-4W-AA9T-01 7 4259834 4259834 G A SDK1 Missense_Mutation p.R1878H 0.15 deleterious(0.02) possibly_damaging(0.903) TCGA-4W-AA9T-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.88 deleterious(0.02) probably_damaging(0.974) TCGA-4W-AA9T-01 7 99021455 99021455 G A ATP5J2-PTCD1 Silent p.N670N 0.18 TCGA-4W-AA9T-01 8 55541689 55541689 A T RP1 Missense_Mutation p.K1749N 0.25 deleterious(0) possibly_damaging(0.848) TCGA-4W-AA9T-01 9 140954190 140954190 G T CACNA1B Splice_Site p.X1556_splice 0.25 TCGA-4W-AA9T-01 9 2643277 2643277 C T VLDLR Missense_Mutation p.A189V 0.31 tolerated(0.12) benign(0.001) TCGA-4W-AA9T-01 X 18192189 18192189 G A BEND2 Missense_Mutation p.P648S 0.19 tolerated(0.07) possibly_damaging(0.796) TCGA-4W-AA9T-01 X 2408706 2408706 G A ZBED1 Missense_Mutation p.P19S 0.25 deleterious(0.02) probably_damaging(0.975) TCGA-4W-AA9T-01 X 35993985 35993985 G A CXorf22 Missense_Mutation p.V890I 0.34 tolerated(0.36) benign(0.141) TCGA-4W-AA9T-01 X 54040945 54040945 G A PHF8 Silent p.V252V 0.29 TCGA-4W-AA9T-01 X 69262953 69262953 G A AWAT2 Missense_Mutation p.R205W 0.27 tolerated(0.05) benign(0.029) TCGA-4W-AA9T-01 X 76949318 76949318 C T ATRX Missense_Mutation p.R160H 0.28 probably_damaging(0.989) TCGA-74-6573-01 10 17363244 17363244 G A ST8SIA6 Missense_Mutation p.T277M 0.62 deleterious(0) probably_damaging(0.967) TCGA-74-6573-01 11 31531364 31531364 C G ELP4 Silent p.A11A 0.20 TCGA-74-6573-01 11 65486084 65486084 G A KAT5 Missense_Mutation p.G430R 0.08 deleterious(0) possibly_damaging(0.84) TCGA-74-6573-01 11 7960683 7960683 G A OR10A3 Missense_Mutation p.P129S 0.36 deleterious(0) probably_damaging(1) TCGA-74-6573-01 12 100601474 100601474 G A ACTR6 Missense_Mutation p.E97K 0.37 deleterious(0) possibly_damaging(0.791) TCGA-74-6573-01 12 102128812 102128812 G T SYCP3 Missense_Mutation p.N82K 0.36 tolerated(0.48) benign(0.06) TCGA-74-6573-01 12 124111633 124111633 C T EIF2B1 Missense_Mutation p.R147Q 0.08 tolerated(0.12) benign(0.031) TCGA-74-6573-01 12 52824357 52824357 G A KRT75 Missense_Mutation p.R335W 0.20 deleterious(0) probably_damaging(0.999) TCGA-74-6573-01 16 10861788 10861788 G A TVP23A 3'UTR 0.34 TCGA-74-6573-01 17 7578211 7578211 C T TP53 Missense_Mutation p.R213Q 0.80 deleterious(0) probably_damaging(1) TCGA-74-6573-01 18 61322767 61322767 C T SERPINB3 3'UTR 0.50 TCGA-74-6573-01 19 15061033 15061033 G A SLC1A6 Missense_Mutation p.R557W 0.27 deleterious(0.03) probably_damaging(0.985) TCGA-74-6573-01 19 35850547 35850547 G T FFAR3 Missense_Mutation p.G252V 0.26 tolerated(0.19) possibly_damaging(0.555) TCGA-74-6573-01 19 53619648 53619648 A G ZNF415 Silent p.D18D 0.47 TCGA-74-6573-01 19 54140039 54140039 C T DPRX Nonsense_Mutation p.R125* 0.45 TCGA-74-6573-01 19 7120678 7120678 T C INSR Silent p.A1204A 0.45 TCGA-74-6573-01 19 7622102 7622102 T C PNPLA6 Missense_Mutation p.L1120P 0.33 deleterious(0) probably_damaging(0.987) TCGA-74-6573-01 1 114354435 114354435 G C RSBN1 Silent p.P200P 0.43 TCGA-74-6573-01 1 169510453 169510453 G A F5 Missense_Mutation p.T1292I 0.41 tolerated_low_confidence(0.15) benign(0.009) TCGA-74-6573-01 1 17281847 17281847 C T CROCC Missense_Mutation p.A1169V 0.07 possibly_damaging(0.614) TCGA-74-6573-01 1 212968375 212968375 T C TATDN3 Intron 0.50 TCGA-74-6573-01 1 248756796 248756796 T C OR2T10 Missense_Mutation p.I92V 0.29 deleterious(0) benign(0.333) TCGA-74-6573-01 1 54060541 54060541 C A GLIS1 Missense_Mutation p.C12F 0.38 deleterious_low_confidence(0) possibly_damaging(0.602) TCGA-74-6573-01 20 31878893 31878893 C T BPIFB1 Missense_Mutation p.R166C 0.09 deleterious(0) probably_damaging(0.976) TCGA-74-6573-01 22 38120288 38120288 C T TRIOBP Silent p.P575P 0.11 TCGA-74-6573-01 2 170163790 170163790 C T LRP2 Splice_Site p.X143_splice 0.37 TCGA-74-6573-01 2 203650727 203650727 C G ICA1L Missense_Mutation p.W416S 0.33 tolerated(0.05) benign(0.016) TCGA-74-6573-01 2 26637295 26637295 G A DRC1 Missense_Mutation p.R80Q 0.28 deleterious(0.01) possibly_damaging(0.527) TCGA-74-6573-01 3 111312907 111312907 G A ZBED2 Missense_Mutation p.H48Y 0.11 tolerated(1) benign(0.007) TCGA-74-6573-01 3 119462849 119462849 G A MAATS1 Missense_Mutation p.G570R 0.44 tolerated(0.5) benign(0.03) TCGA-74-6573-01 3 168833248 168833248 G A MECOM Silent p.N681N 0.43 TCGA-74-6573-01 3 51315131 51315131 C T DOCK3 Silent p.H923H 0.34 TCGA-74-6573-01 3 59999845 59999845 C T FHIT Missense_Mutation p.R46H 0.05 deleterious(0.04) benign(0.308) TCGA-74-6573-01 4 186545046 186545046 G A SORBS2 Missense_Mutation p.R609C 0.44 deleterious(0) probably_damaging(0.999) TCGA-74-6573-01 4 6062187 6062187 G A JAKMIP1 Silent p.I536I 0.37 TCGA-74-6573-01 4 8089918 8089918 C T ABLIM2 Silent p.A144A 0.32 TCGA-74-6573-01 5 147830788 147830788 G A HTR4 Missense_Mutation p.P375L 0.40 tolerated_low_confidence(0.81) benign(0.013) TCGA-74-6573-01 5 149501489 149501489 G T PDGFRB Silent p.I766I 0.17 TCGA-74-6573-01 5 67589601 67589602 - GTT PIK3R1 In_Frame_Ins p.Q455_F456insL 0.50 TCGA-74-6573-01 6 17805708 17805708 C A KIF13A Nonsense_Mutation p.E768* 0.17 TCGA-74-6573-01 6 88855003 88855003 C A CNR1 5'UTR 0.11 TCGA-74-6573-01 7 142428546 142428546 G T TRBV28 Missense_Mutation p.A15S 0.09 tolerated(0.53) benign(0.005) TCGA-74-6573-01 7 151097266 151097266 G A WDR86 Silent p.A75A 0.33 TCGA-74-6573-01 7 24727093 24727093 C T MPP6 Missense_Mutation p.R495W 0.16 deleterious(0.01) probably_damaging(0.973) TCGA-74-6573-01 7 38725645 38725645 G A FAM183B 5'UTR 0.32 TCGA-74-6573-01 7 97617753 97617753 C T OCM2 Missense_Mutation p.G57R 0.32 deleterious(0) probably_damaging(1) TCGA-74-6573-01 7 99773980 99773980 G A GPC2 Missense_Mutation p.L59F 0.31 deleterious(0) probably_damaging(0.998) TCGA-74-6573-01 7 99955938 99955938 C T PILRB Silent p.L5L 0.25 TCGA-74-6573-01 8 121160106 121160106 C T COL14A1 Missense_Mutation p.R9W 0.44 tolerated_low_confidence(0.09) benign(0.001) TCGA-74-6573-01 8 22211836 22211836 A G PIWIL2 Missense_Mutation p.T904A 0.35 deleterious(0) probably_damaging(0.998) TCGA-74-6573-01 9 123673632 123673632 C T TRAF1 Missense_Mutation p.V289I 0.20 tolerated(0.48) benign(0.006) TCGA-74-6573-01 9 20346534 20346534 G T MLLT3 Silent p.I538I 0.09 TCGA-74-6573-01 9 8341178 8341178 G C PTPRD Missense_Mutation p.P1680A 0.31 deleterious(0.03) probably_damaging(0.995) TCGA-74-6573-01 9 8341203 8341203 G C PTPRD Missense_Mutation p.F1671L 0.27 deleterious(0) probably_damaging(0.945) TCGA-74-6573-01 X 77529254 77529254 G A CYSLTR1 5'UTR 0.84 TCGA-74-6573-01 X 84363108 84363108 C T SATL1 Silent p.V289V 0.17 TCGA-74-6575-01 10 76855549 76855549 C T DUSP13 Missense_Mutation p.A110T 0.05 tolerated(0.88) benign(0.017) TCGA-74-6575-01 11 102988581 102988581 C T DYNC2H1 Missense_Mutation p.R330C 0.28 probably_damaging(0.998) TCGA-74-6575-01 11 111933300 111933300 T C DLAT 3'UTR 0.27 TCGA-74-6575-01 11 1156628 1156628 C T MUC5AC Silent p.N215N 0.24 TCGA-74-6575-01 11 120998519 120998519 C T TECTA Silent p.P611P 0.28 TCGA-74-6575-01 11 121031074 121031074 G A TECTA Silent p.P1640P 0.33 TCGA-74-6575-01 11 556905 556905 C T C11orf35 Silent p.P302P 0.29 TCGA-74-6575-01 11 64876819 64876819 C T VPS51 Missense_Mutation p.T504M 0.23 tolerated(0.1) benign(0.047) TCGA-74-6575-01 12 107371558 107371559 - AT MTERFD3 Frame_Shift_Ins p.S312Yfs*3 0.12 TCGA-74-6575-01 12 10978396 10978396 T C TAS2R10 Missense_Mutation p.N158S 0.25 tolerated(0.78) benign(0.021) TCGA-74-6575-01 12 112888189 112888189 G A PTPN11 Missense_Mutation p.E69K 0.16 deleterious(0) benign(0.203) TCGA-74-6575-01 12 117993006 117993006 G C KSR2 Missense_Mutation p.Q496E 0.09 tolerated(1) benign(0.416) TCGA-74-6575-01 12 133373156 133373156 G A GOLGA3 Missense_Mutation p.S690L 0.33 deleterious(0.03) benign(0.019) TCGA-74-6575-01 12 13720091 13720091 G C GRIN2B Missense_Mutation p.F822L 0.06 deleterious(0) probably_damaging(0.994) TCGA-74-6575-01 12 48483052 48483052 C T SENP1 Intron 0.30 TCGA-74-6575-01 13 19751438 19751438 G A TUBA3C Missense_Mutation p.R229C 0.31 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-74-6575-01 13 28794483 28794483 T C PAN3 Missense_Mutation p.M323T 0.31 tolerated(0.12) benign(0.037) TCGA-74-6575-01 13 29041702 29041702 G T FLT1 Silent p.T39T 0.19 TCGA-74-6575-01 13 33703470 33703470 C T STARD13 Silent p.A448A 0.30 TCGA-74-6575-01 14 20248896 20248896 C T OR4M1 Missense_Mutation p.R139C 0.31 deleterious(0.03) benign(0.005) TCGA-74-6575-01 14 79432392 79432392 G A NRXN3 Missense_Mutation p.R434H 0.26 deleterious(0.02) probably_damaging(0.956) TCGA-74-6575-01 14 91755541 91755541 G A CCDC88C Missense_Mutation p.P1450L 0.07 deleterious(0.04) benign(0.002) TCGA-74-6575-01 15 101432805 101432805 G T ALDH1A3 Missense_Mutation p.G146W 0.37 deleterious(0) probably_damaging(0.999) TCGA-74-6575-01 15 65551675 65551675 C G PARP16 3'UTR 0.08 TCGA-74-6575-01 15 70959297 70959297 G C UACA Missense_Mutation p.S1242R 0.12 tolerated(0.1) benign(0.04) TCGA-74-6575-01 16 4411454 4411454 C T CORO7 Missense_Mutation p.R532H 0.12 deleterious(0) probably_damaging(0.999) TCGA-74-6575-01 17 26817444 26817444 G A SLC13A2 Silent p.P117P 0.29 TCGA-74-6575-01 17 29654677 29654678 - C NF1 Frame_Shift_Ins p.T1811Hfs*8 0.29 TCGA-74-6575-01 17 29850999 29850999 C A RAB11FIP4 Missense_Mutation p.T373K 0.28 deleterious(0) benign(0.305) TCGA-74-6575-01 18 19996611 19996611 G A CTAGE1 Silent p.D388D 0.18 TCGA-74-6575-01 18 28662997 28662997 T A DSC2 Missense_Mutation p.K324N 0.33 deleterious(0.01) probably_damaging(1) TCGA-74-6575-01 19 15510183 15510183 G A AKAP8L Missense_Mutation p.R363C 0.30 deleterious(0) benign(0.348) TCGA-74-6575-01 19 17014389 17014389 G A CPAMD8 Silent p.D1531D 0.09 TCGA-74-6575-01 19 19206999 19206999 G T SLC25A42 Silent p.S22S 0.46 TCGA-74-6575-01 19 2733313 2733313 C T SLC39A3 Silent p.V127V 0.30 TCGA-74-6575-01 19 288137 288137 G A PPAP2C Silent p.N50N 0.30 TCGA-74-6575-01 19 44015698 44015698 G A ETHE1 Silent p.S132S 0.16 TCGA-74-6575-01 19 51274617 51274617 C T GPR32 Missense_Mutation p.P254S 0.14 deleterious(0.03) possibly_damaging(0.506) TCGA-74-6575-01 19 51503469 51503469 A G KLK8 Silent p.D137D 0.21 TCGA-74-6575-01 19 54744862 54744862 C T LILRA6 Missense_Mutation p.R267H 0.10 tolerated(0.51) benign(0.104) TCGA-74-6575-01 19 56313012 56313012 C G NLRP11 Silent p.T699T 0.04 TCGA-74-6575-01 19 56407321 56407321 T A NLRP13 Missense_Mutation p.K1041I 0.09 tolerated(0.39) possibly_damaging(0.859) TCGA-74-6575-01 19 58850663 58850663 T - ZSCAN22 Frame_Shift_Del p.L483Cfs*18 0.21 TCGA-74-6575-01 19 6854017 6854017 C T VAV1 Nonsense_Mutation p.R798* 0.28 TCGA-74-6575-01 1 100464899 100464899 A C SLC35A3 Silent p.P90P 0.22 TCGA-74-6575-01 1 151820732 151820732 G A THEM5 Silent p.D167D 0.37 TCGA-74-6575-01 1 158325309 158325309 G A CD1E Missense_Mutation p.R192Q 0.27 tolerated(0.13) benign(0.014) TCGA-74-6575-01 1 158621161 158621161 C T SPTA1 Missense_Mutation p.R1158Q 0.17 tolerated(0.68) benign(0.042) TCGA-74-6575-01 1 160461161 160461161 G T SLAMF6 Missense_Mutation p.Q134K 0.11 deleterious(0.03) possibly_damaging(0.717) TCGA-74-6575-01 1 167400872 167400872 T C CD247 3'UTR 0.29 TCGA-74-6575-01 1 182898838 182898838 T A SHCBP1L Nonsense_Mutation p.R376* 0.16 TCGA-74-6575-01 1 216498789 216498789 C T USH2A Missense_Mutation p.R334Q 0.22 probably_damaging(1) TCGA-74-6575-01 1 247978682 247978682 G A OR14A16 Missense_Mutation p.S117F 0.29 deleterious(0) benign(0.26) TCGA-74-6575-01 1 248263535 248263535 C A OR2L13 Silent p.P286P 0.18 TCGA-74-6575-01 1 31897702 31897702 G A SERINC2 Missense_Mutation p.R134Q 0.22 deleterious(0) probably_damaging(0.99) TCGA-74-6575-01 1 43788435 43788435 A G TIE1 3'UTR 0.52 TCGA-74-6575-01 1 55457875 55457875 G A TMEM61 3'UTR 0.17 TCGA-74-6575-01 1 94655688 94655688 C T ARHGAP29 Intron 0.21 TCGA-74-6575-01 20 61958120 61958120 C A COL20A1 Missense_Mutation p.A1158E 0.17 deleterious(0.02) possibly_damaging(0.833) TCGA-74-6575-01 2 178481798 178481798 G A TTC30A Silent p.C544C 0.29 TCGA-74-6575-01 2 179417389 179417389 C T TTN Missense_Mutation p.A30080T 0.32 TCGA-74-6575-01 2 179448529 179448529 C T TTN Missense_Mutation p.V21794I 0.22 TCGA-74-6575-01 2 179515501 179515501 C G TTN Missense_Mutation p.R13229T 0.12 TCGA-74-6575-01 2 226446762 226446762 C T NYAP2 Missense_Mutation p.T210M 0.25 deleterious(0.01) possibly_damaging(0.45) TCGA-74-6575-01 2 234628246 234628246 C T UGT1A4 Silent p.D260D 0.28 TCGA-74-6575-01 2 39250170 39250170 A C SOS1 Missense_Mutation p.L467V 0.34 tolerated(0.18) possibly_damaging(0.847) TCGA-74-6575-01 2 70742023 70742023 T C TGFA Missense_Mutation p.Q21R 0.55 tolerated_low_confidence(0.39) benign(0.088) TCGA-74-6575-01 2 71576267 71576267 T C ZNF638 Silent p.Y61Y 0.22 TCGA-74-6575-01 2 97505993 97505993 T C ANKRD23 Silent p.G200G 0.27 TCGA-74-6575-01 3 10302000 10302000 G A TATDN2 Silent p.S198S 0.17 TCGA-74-6575-01 3 108724078 108724078 G A MORC1 Missense_Mutation p.R618C 0.30 deleterious(0.05) benign(0.324) TCGA-74-6575-01 3 172501613 172501613 C G ECT2 Missense_Mutation p.P548A 0.10 deleterious(0.03) probably_damaging(0.999) TCGA-74-6575-01 3 189582022 189582022 A C TP63 Missense_Mutation p.Y194S 0.06 deleterious(0) probably_damaging(0.978) TCGA-74-6575-01 3 194062052 194062052 G A CPN2 Silent p.D460D 0.34 TCGA-74-6575-01 3 194165469 194165469 C T ATP13A3 Missense_Mutation p.R515Q 0.05 tolerated(0.25) benign(0.027) TCGA-74-6575-01 3 49694511 49694511 G A BSN Missense_Mutation p.A2508T 0.25 unknown(0) TCGA-74-6575-01 3 50099537 50099537 C T RBM6 Missense_Mutation p.T861M 0.10 tolerated(0.07) benign(0.336) TCGA-74-6575-01 3 51429849 51429850 - A RBM15B Frame_Shift_Ins p.F340Lfs*4 0.25 TCGA-74-6575-01 3 62467450 62467450 G T CADPS Missense_Mutation p.Q1041K 0.30 tolerated(0.18) benign(0.042) TCGA-74-6575-01 3 81539510 81539510 G C GBE1 3'UTR 0.07 TCGA-74-6575-01 3 81539533 81539533 C T GBE1 3'UTR 0.09 TCGA-74-6575-01 4 153881743 153881743 C T FHDC1 Silent p.G230G 0.36 TCGA-74-6575-01 4 187003807 187003807 A - TLR3 Frame_Shift_Del p.N323Mfs*2 0.30 TCGA-74-6575-01 4 79236806 79236806 T G FRAS1 Silent p.T579T 0.38 TCGA-74-6575-01 4 79400786 79400786 C T FRAS1 Missense_Mutation p.A2786V 0.07 benign(0.167) TCGA-74-6575-01 5 140235776 140235776 C T PCDHA10 Missense_Mutation p.A48V 0.05 deleterious_low_confidence(0.01) possibly_damaging(0.761) TCGA-74-6575-01 5 140307515 140307515 G A PCDHAC1 Silent p.S346S 0.08 TCGA-74-6575-01 5 161128666 161128666 A G GABRA6 Missense_Mutation p.I417V 0.33 tolerated(0.07) probably_damaging(0.946) TCGA-74-6575-01 5 23526688 23526688 G C PRDM9 Missense_Mutation p.E497D 0.12 tolerated(0.14) possibly_damaging(0.522) TCGA-74-6575-01 5 23526750 23526750 T A PRDM9 Missense_Mutation p.I518N 0.10 tolerated(0.11) benign(0.163) TCGA-74-6575-01 5 35740247 35740247 T A SPEF2 Missense_Mutation p.F1070I 0.07 deleterious(0.01) probably_damaging(0.991) TCGA-74-6575-01 5 35988627 35988627 G A UGT3A1 Missense_Mutation p.R41W 0.49 deleterious(0) probably_damaging(0.994) TCGA-74-6575-01 5 36677194 36677194 G C SLC1A3 Silent p.V256V 0.30 TCGA-74-6575-01 5 67591259 67591261 AAA - PIK3R1 In_Frame_Del p.K587del 0.29 TCGA-74-6575-01 5 67593227 67593245 CTCTCCTCTCTAGGGTGGA - PIK3R1 Splice_Site p.X662_splice 0.25 TCGA-74-6575-01 5 94044306 94044306 T A MCTP1 Nonsense_Mutation p.K947* 0.15 TCGA-74-6575-01 5 98192335 98192335 G A CHD1 Missense_Mutation p.H1628Y 0.20 tolerated_low_confidence(0.32) benign(0.015) TCGA-74-6575-01 6 160493069 160493069 G T IGF2R Splice_Site p.X1524_splice 0.24 TCGA-74-6575-01 7 116955387 116955387 G T WNT2 Missense_Mutation p.A109D 0.22 deleterious(0) probably_damaging(0.999) TCGA-74-6575-01 7 123508674 123508674 T C HYAL4 Missense_Mutation p.I116T 0.25 tolerated(0.54) benign(0.005) TCGA-74-6575-01 7 131865369 131865369 G A PLXNA4 Silent p.N1205N 0.21 TCGA-74-6575-01 7 21609750 21609750 G T DNAH11 Missense_Mutation p.V420L 0.16 benign(0.072) TCGA-74-6575-01 7 44578753 44578753 G T NPC1L1 Missense_Mutation p.P415T 0.29 tolerated(0.09) benign(0.031) TCGA-74-6575-01 7 55467774 55467774 G A LANCL2 Missense_Mutation p.V219M 0.24 deleterious(0) probably_damaging(0.985) TCGA-74-6575-01 7 86521207 86521207 T A KIAA1324L Splice_Site p.X955_splice 0.33 TCGA-74-6575-01 7 94042435 94042435 T A COL1A2 Missense_Mutation p.L515H 0.10 unknown(0) TCGA-74-6575-01 8 42036566 42036566 G A PLAT Missense_Mutation p.S460L 0.15 deleterious(0) probably_damaging(1) TCGA-74-6575-01 8 55533600 55533600 G A RP1 Missense_Mutation p.R25H 0.35 deleterious(0) probably_damaging(0.999) TCGA-74-6575-01 8 71057034 71057034 C G NCOA2 Missense_Mutation p.Q885H 0.07 deleterious(0.04) possibly_damaging(0.825) TCGA-74-6575-01 9 112200417 112200417 G A PTPN3 Silent p.V188V 0.36 TCGA-74-6575-01 9 131864744 131864744 T C CRAT Missense_Mutation p.T189A 0.31 tolerated(0.1) benign(0.002) TCGA-74-6575-01 9 139639655 139639655 C T LCN6 Missense_Mutation p.G127R 0.32 tolerated(0.73) possibly_damaging(0.744) TCGA-74-6575-01 9 15214139 15214139 G C TTC39B Silent p.P160P 0.16 TCGA-74-6575-01 9 4663312 4663312 C G PPAPDC2 3'UTR 0.08 TCGA-74-6575-01 X 100538449 100538449 C G TAF7L Missense_Mutation p.D176H 0.04 deleterious(0) probably_damaging(0.998) TCGA-74-6575-01 X 100538507 100538507 C G TAF7L Missense_Mutation p.L156F 0.06 deleterious(0) probably_damaging(1) TCGA-74-6575-01 X 108868079 108868079 G A KCNE1L Silent p.D57D 0.27 TCGA-74-6575-01 X 128890500 128890500 A C XPNPEP2 Missense_Mutation p.M446L 0.04 tolerated(0.2) benign(0.016) TCGA-74-6575-01 X 12906437 12906437 A T TLR7 Missense_Mutation p.Q937L 0.30 tolerated(0.81) benign(0.232) TCGA-74-6575-01 X 1407534 1407534 A G CSF2RA Silent p.S114S 0.04 TCGA-74-6575-01 X 153592699 153592699 G A FLNA Silent p.A688A 0.30 TCGA-74-6575-01 X 15526512 15526512 C G BMX Silent p.L12L 0.07 TCGA-74-6575-01 X 18664128 18664128 C T CDKL5 Silent p.D905D 0.12 TCGA-74-6575-01 X 3228609 3228609 G A MXRA5 Silent p.H2545H 0.35 TCGA-74-6575-01 X 56590893 56590893 C T UBQLN2 Missense_Mutation p.S196L 0.07 deleterious(0) possibly_damaging(0.783) TCGA-74-6575-01 X 69713325 69713325 C G DLG3 Intron 0.53 TCGA-74-6575-01 X 73067643 73067643 G A XIST RNA 0.25 TCGA-74-6575-01 X 76918879 76918879 C G ATRX Missense_Mutation p.R1371T 0.27 probably_damaging(0.997) TCGA-74-6575-01 X 82763915 82763915 G C POU3F4 Missense_Mutation p.E195Q 0.13 deleterious(0) probably_damaging(1) TCGA-74-6577-01 10 89720855 89720856 - A PTEN Nonsense_Mutation p.Y336* 0.33 TCGA-74-6577-01 11 57155245 57155245 C T PRG2 Missense_Mutation p.V198M 0.41 deleterious(0.01) probably_damaging(0.998) TCGA-74-6577-01 12 25398284 25398284 C T KRAS Missense_Mutation p.G12D 0.24 deleterious(0) benign(0.361) TCGA-74-6577-01 12 50344911 50344911 G A AQP2 Missense_Mutation p.G100R 0.38 deleterious(0) probably_damaging(1) TCGA-74-6577-01 12 57108166 57108166 T C NACA Missense_Mutation p.S782G 0.19 deleterious_low_confidence(0.05) benign(0.078) TCGA-74-6577-01 13 50080768 50080768 T - PHF11 Intron 0.21 TCGA-74-6577-01 14 106320735 106320735 C T IGHM Missense_Mutation p.A359T 0.25 deleterious(0.02) possibly_damaging(0.5) TCGA-74-6577-01 14 20345324 20345324 A G OR4K2 Missense_Mutation p.K300E 0.21 deleterious(0.01) possibly_damaging(0.611) TCGA-74-6577-01 14 20760171 20760171 G A TTC5 Missense_Mutation p.R392W 0.24 deleterious(0.01) probably_damaging(0.956) TCGA-74-6577-01 14 35331298 35331298 C T BAZ1A Missense_Mutation p.R115Q 0.28 deleterious(0) possibly_damaging(0.553) TCGA-74-6577-01 15 35045056 35045056 G A GJD2 Missense_Mutation p.R197C 0.37 deleterious(0) probably_damaging(0.951) TCGA-74-6577-01 15 40750942 40750942 G A BAHD1 Silent p.P93P 0.23 TCGA-74-6577-01 15 43893602 43893602 T C STRC Missense_Mutation p.T1565A 0.27 tolerated(0.73) benign(0) TCGA-74-6577-01 16 5058451 5058451 G A SEC14L5 Silent p.S534S 0.38 TCGA-74-6577-01 17 58603208 58603208 G A APPBP2 Missense_Mutation p.R29C 0.30 deleterious(0) possibly_damaging(0.828) TCGA-74-6577-01 17 72576247 72576247 G A CD300LD Missense_Mutation p.P160L 0.35 tolerated(0.91) benign(0) TCGA-74-6577-01 18 61471645 61471645 C T SERPINB7 Missense_Mutation p.L307F 0.30 tolerated(0.12) benign(0.335) TCGA-74-6577-01 18 77037059 77037059 G A ATP9B Missense_Mutation p.R425H 0.35 deleterious(0) probably_damaging(0.999) TCGA-74-6577-01 19 10335447 10335447 G A S1PR2 Silent p.C45C 0.29 TCGA-74-6577-01 19 19655680 19655680 C T CILP2 Missense_Mutation p.R776C 0.33 deleterious(0) probably_damaging(0.977) TCGA-74-6577-01 19 54803127 54803127 C T LILRA3 Missense_Mutation p.V184M 0.28 tolerated(0.07) possibly_damaging(0.782) TCGA-74-6577-01 19 56382302 56382302 G A NLRP4 Missense_Mutation p.E822K 0.28 tolerated(0.4) benign(0.025) TCGA-74-6577-01 1 152185734 152185734 C T HRNR Missense_Mutation p.G2791S 0.53 unknown(0) TCGA-74-6577-01 20 390566 390566 G A RBCK1 Missense_Mutation p.G22R 0.29 deleterious(0.02) probably_damaging(0.96) TCGA-74-6577-01 2 121748070 121748070 G T GLI2 Missense_Mutation p.G1527V 0.28 deleterious(0) probably_damaging(0.999) TCGA-74-6577-01 3 52475334 52475334 C T SEMA3G Silent p.S253S 0.25 TCGA-74-6577-01 4 70346533 70346533 C T UGT2B4 Missense_Mutation p.R469H 0.23 deleterious(0.04) benign(0.159) TCGA-74-6577-01 5 146750222 146750222 G A STK32A Silent p.P222P 0.30 TCGA-74-6577-01 5 148619445 148619445 C T ABLIM3 Missense_Mutation p.R400C 0.25 deleterious(0.02) possibly_damaging(0.608) TCGA-74-6577-01 5 73992559 73992559 G T HEXB Nonsense_Mutation p.G185* 0.08 TCGA-74-6577-01 6 76566831 76566834 AGCA - MYO6 Frame_Shift_Del p.A416Tfs*20 0.39 TCGA-74-6577-01 7 151945253 151945253 C T KMT2C Missense_Mutation p.G756R 0.14 benign(0.003) TCGA-74-6577-01 7 157985120 157985120 C T PTPRN2 Missense_Mutation p.A150T 0.25 tolerated(0.7) benign(0.01) TCGA-74-6577-01 7 47869692 47869692 C T PKD1L1 Silent p.L2168L 0.14 TCGA-74-6577-01 7 76054396 76054396 G A ZP3 Missense_Mutation p.V39I 0.21 tolerated(0.15) benign(0.001) TCGA-74-6577-01 9 113171158 113171158 G A SVEP1 Missense_Mutation p.P2241L 0.25 benign(0.042) TCGA-74-6577-01 9 114475419 114475419 C G C9orf84 Missense_Mutation p.E753Q 0.38 deleterious(0.02) probably_damaging(0.953) TCGA-74-6577-01 9 118982397 118982397 T C PAPPA Silent p.H700H 0.26 TCGA-74-6577-01 9 79324782 79324782 A T PRUNE2 Missense_Mutation p.F803Y 0.33 deleterious(0.01) probably_damaging(0.952) TCGA-74-6577-01 X 123197784 123197784 C G STAG2 Nonsense_Mutation p.Y636* 0.57 TCGA-74-6577-01 X 131216403 131216403 C A FRMD7 Missense_Mutation p.S298I 0.13 deleterious(0) probably_damaging(0.999) TCGA-74-6577-01 X 37027712 37027712 G A FAM47C Missense_Mutation p.R410H 0.67 deleterious(0.01) probably_damaging(0.983) TCGA-74-6577-01 X 41206682 41206683 - AGC DDX3X In_Frame_Ins p.S631dup 0.50 TCGA-74-6578-01 10 112350849 112350851 AAC - SMC3 In_Frame_Del p.N591del 0.59 TCGA-74-6578-01 10 64415230 64415230 G A ZNF365 Intron 0.46 TCGA-74-6578-01 11 134048751 134048751 C T NCAPD3 Silent p.Q880Q 0.29 TCGA-74-6578-01 11 606567 606567 G T PHRF1 Missense_Mutation p.R526L 0.12 deleterious(0) probably_damaging(0.999) TCGA-74-6578-01 11 6462111 6462111 G A HPX Missense_Mutation p.P28L 0.20 tolerated(0.66) benign(0) TCGA-74-6578-01 11 71146770 71146770 A T DHCR7 Missense_Mutation p.L360Q 0.34 tolerated(0.06) probably_damaging(0.949) TCGA-74-6578-01 11 77580777 77580777 G A AAMDC Missense_Mutation p.G48S 0.36 deleterious(0.01) probably_damaging(0.996) TCGA-74-6578-01 12 109509449 109509449 G A USP30 Silent p.S171S 0.32 TCGA-74-6578-01 12 122209423 122209423 G A TMEM120B Missense_Mutation p.R216H 0.35 deleterious(0) probably_damaging(0.988) TCGA-74-6578-01 12 14695158 14695158 C T PLBD1 Missense_Mutation p.V135M 0.31 deleterious(0.05) probably_damaging(0.978) TCGA-74-6578-01 12 21997449 21997449 G A ABCC9 Missense_Mutation p.R1095C 0.37 deleterious(0) probably_damaging(0.995) TCGA-74-6578-01 12 32977045 32977045 G A PKP2 Silent p.D580D 0.41 TCGA-74-6578-01 12 66786464 66786464 C G GRIP1 Missense_Mutation p.Q702H 0.33 deleterious(0) probably_damaging(0.967) TCGA-74-6578-01 13 113964010 113964010 C A LAMP1 Missense_Mutation p.S79Y 0.39 deleterious(0) possibly_damaging(0.84) TCGA-74-6578-01 14 20404274 20404274 C T OR4K1 Missense_Mutation p.A150V 0.21 tolerated(0.9) benign(0.02) TCGA-74-6578-01 15 43525396 43525396 G A TGM5 Missense_Mutation p.A719V 0.30 deleterious(0) benign(0.015) TCGA-74-6578-01 15 83725179 83725179 G A BTBD1 Missense_Mutation p.H174Y 0.34 deleterious(0.01) possibly_damaging(0.625) TCGA-74-6578-01 16 20999316 20999316 T A DNAH3 Missense_Mutation p.S2225C 0.24 deleterious(0.02) benign(0.049) TCGA-74-6578-01 16 67327795 67327795 T C KCTD19 Missense_Mutation p.T624A 0.33 tolerated(0.14) benign(0.001) TCGA-74-6578-01 17 2276367 2276367 A G SGSM2 Missense_Mutation p.M637V 0.38 deleterious(0.01) probably_damaging(0.942) TCGA-74-6578-01 17 33491149 33491149 G A UNC45B Missense_Mutation p.R372H 0.30 deleterious(0) probably_damaging(1) TCGA-74-6578-01 17 51900723 51900723 G A KIF2B Missense_Mutation p.R110H 0.38 tolerated(0.08) benign(0.24) TCGA-74-6578-01 17 77708908 77708908 C T ENPP7 Missense_Mutation p.R156W 0.33 deleterious(0.03) possibly_damaging(0.849) TCGA-74-6578-01 17 79167876 79167876 C A AZI1 Missense_Mutation p.R724L 0.13 deleterious(0) benign(0.068) TCGA-74-6578-01 19 15082585 15082585 G T SLC1A6 Missense_Mutation p.L103M 0.23 tolerated(0.14) possibly_damaging(0.761) TCGA-74-6578-01 19 19655518 19655518 C T CILP2 Missense_Mutation p.R722W 0.15 deleterious(0) probably_damaging(0.984) TCGA-74-6578-01 19 2877392 2877392 C T ZNF556 Missense_Mutation p.R146W 0.15 tolerated(0.11) benign(0.002) TCGA-74-6578-01 19 50360994 50360996 CAA - PTOV1 In_Frame_Del p.N255del 0.31 TCGA-74-6578-01 19 54758761 54758761 C T LILRB5 Silent p.P364P 0.33 TCGA-74-6578-01 19 55648558 55648558 C T TNNT1 Missense_Mutation p.R175Q 0.26 deleterious(0.01) possibly_damaging(0.862) TCGA-74-6578-01 19 9047753 9047753 G A MUC16 Missense_Mutation p.P11293L 0.24 benign(0.158) TCGA-74-6578-01 1 119925581 119925581 G T HAO2 Missense_Mutation p.D59Y 0.38 deleterious(0) probably_damaging(0.998) TCGA-74-6578-01 1 120165681 120165681 G A ZNF697 Missense_Mutation p.R429C 0.33 deleterious(0) probably_damaging(0.999) TCGA-74-6578-01 1 120512133 120512133 C T NOTCH2 Splice_Site p.X370_splice 0.19 TCGA-74-6578-01 1 147091673 147091673 C G BCL9 Missense_Mutation p.S571C 0.35 deleterious(0.04) benign(0.41) TCGA-74-6578-01 1 152193180 152193180 G A HRNR Missense_Mutation p.H309Y 0.38 unknown(0) TCGA-74-6578-01 1 154987218 154987218 C T ZBTB7B Missense_Mutation p.R62C 0.34 deleterious(0) probably_damaging(0.953) TCGA-74-6578-01 1 166039701 166039701 G A FAM78B Missense_Mutation p.T188I 0.44 deleterious(0) probably_damaging(0.996) TCGA-74-6578-01 1 2493045 2493045 C T TNFRSF14 Intron 0.41 TCGA-74-6578-01 1 2527458 2527458 G A MMEL1 Missense_Mutation p.A497V 0.13 deleterious(0) probably_damaging(0.943) TCGA-74-6578-01 1 32650218 32650218 G A TXLNA Splice_Site p.X199_splice 0.27 TCGA-74-6578-01 1 38227170 38227170 G A EPHA10 Missense_Mutation p.R253C 0.40 deleterious(0) probably_damaging(0.994) TCGA-74-6578-01 1 39913453 39913453 G A MACF1 Silent p.Q4558Q 0.32 TCGA-74-6578-01 20 21377636 21377636 G A NKX2-4 Silent p.T134T 0.38 TCGA-74-6578-01 20 23584188 23584188 C T CST9 Missense_Mutation p.G147R 0.38 tolerated_low_confidence(0.25) possibly_damaging(0.697) TCGA-74-6578-01 21 10906911 10906911 G A TPTE Silent p.S550S 0.12 TCGA-74-6578-01 22 46932243 46932243 G A CELSR1 Silent p.G275G 0.11 TCGA-74-6578-01 2 108625088 108625088 G A SLC5A7 Missense_Mutation p.A355T 0.34 tolerated(0.14) possibly_damaging(0.759) TCGA-74-6578-01 2 169791877 169791877 C T ABCB11 Missense_Mutation p.R958Q 0.06 tolerated(0.23) benign(0.004) TCGA-74-6578-01 2 208632195 208632195 G A FZD5 Silent p.F423F 0.35 TCGA-74-6578-01 2 238727201 238727201 G A RBM44 Missense_Mutation p.V548I 0.64 tolerated(0.16) possibly_damaging(0.711) TCGA-74-6578-01 2 55874482 55874482 C G PNPT1 Missense_Mutation p.L534F 0.34 deleterious(0.01) probably_damaging(0.997) TCGA-74-6578-01 3 101080632 101080632 T G SENP7 Missense_Mutation p.D517A 0.39 tolerated(0.1) benign(0.005) TCGA-74-6578-01 3 178936092 178936092 A C PIK3CA Missense_Mutation p.E545A 0.28 deleterious(0.02) probably_damaging(0.965) TCGA-74-6578-01 3 180321035 180321035 G A TTC14 Missense_Mutation p.R137Q 0.31 tolerated(0.18) probably_damaging(0.973) TCGA-74-6578-01 3 38591818 38591818 G A SCN5A Silent p.I2015I 0.32 TCGA-74-6578-01 3 69120763 69120763 C T UBA3 Silent p.L90L 0.35 TCGA-74-6578-01 4 38830189 38830189 C T TLR6 Silent p.T302T 0.45 TCGA-74-6578-01 4 68396616 68396616 G A CENPC Missense_Mutation p.P83L 0.24 tolerated(0.17) probably_damaging(0.994) TCGA-74-6578-01 4 69978432 69978432 C G UGT2B7 Missense_Mutation p.A523G 0.37 tolerated(1) benign(0) TCGA-74-6578-01 4 79351554 79351554 G A FRAS1 Missense_Mutation p.R1651Q 0.32 benign(0.001) TCGA-74-6578-01 5 150726999 150726999 T A SLC36A2 Missense_Mutation p.E8V 0.37 tolerated(0.15) benign(0.025) TCGA-74-6578-01 5 177422940 177422940 G C PROP1 5'UTR 0.49 TCGA-74-6578-01 5 52781745 52781745 A G FST Intron 0.27 TCGA-74-6578-01 5 73128174 73128174 G A ARHGEF28 Missense_Mutation p.D346N 0.24 deleterious(0.02) possibly_damaging(0.83) TCGA-74-6578-01 6 133846158 133846158 G A EYA4 Intron 0.36 TCGA-74-6578-01 6 31765410 31765410 C T LSM2 3'UTR 0.12 TCGA-74-6578-01 6 49582542 49582542 C A RHAG Missense_Mutation p.W222L 0.30 deleterious(0) probably_damaging(1) TCGA-74-6578-01 6 70961988 70961988 G A COL9A1 Nonsense_Mutation p.Q599* 0.05 TCGA-74-6578-01 6 7575560 7575560 G A DSP Silent p.S823S 0.37 TCGA-74-6578-01 7 146536869 146536869 G A CNTNAP2 Missense_Mutation p.R92Q 0.20 tolerated(0.06) probably_damaging(0.998) TCGA-74-6578-01 7 94039079 94039079 C T COL1A2 Silent p.R327R 0.23 TCGA-74-6578-01 8 101203698 101203698 G A SPAG1 Missense_Mutation p.V305I 0.41 tolerated(0.25) benign(0.11) TCGA-74-6578-01 8 125131869 125131869 G A FER1L6 Silent p.S1804S 0.35 TCGA-74-6578-01 8 144992335 144992335 A G PLEC Missense_Mutation p.F4022S 0.18 probably_damaging(1) TCGA-74-6578-01 8 25220568 25220568 C A DOCK5 Missense_Mutation p.F985L 0.29 deleterious(0) possibly_damaging(0.636) TCGA-74-6578-01 8 42939877 42939877 C T FNTA Silent p.S290S 0.30 TCGA-74-6578-01 9 105767035 105767035 C - CYLC2 Frame_Shift_Del p.S80Ffs*2 0.26 TCGA-74-6578-01 9 140327980 140327980 C T NOXA1 Nonsense_Mutation p.R329* 0.53 TCGA-74-6578-01 9 37020754 37020754 G A PAX5 Missense_Mutation p.R31W 0.32 deleterious(0) probably_damaging(1) TCGA-74-6578-01 9 6592871 6592871 G A GLDC Missense_Mutation p.R461W 0.36 deleterious(0) probably_damaging(0.998) TCGA-74-6578-01 X 115588823 115588823 G A SLC6A14 Missense_Mutation p.A555T 0.70 tolerated(0.56) benign(0.001) TCGA-74-6578-01 X 86068163 86068163 C T DACH2 Missense_Mutation p.R474C 0.58 deleterious(0) possibly_damaging(0.889) TCGA-74-6581-01 10 103769740 103769741 GA - C10orf76 Frame_Shift_Del p.V292Tfs*4 0.56 TCGA-74-6581-01 10 13320255 13320255 G T PHYH 3'UTR 0.20 TCGA-74-6581-01 11 125550745 125550745 G C ACRV1 5'UTR 0.36 TCGA-74-6581-01 11 128651887 128651887 C T FLI1 Silent p.T208T 0.41 TCGA-74-6581-01 12 132681798 132681798 T G GALNT9 Missense_Mutation p.S190R 0.46 deleterious(0.03) benign(0.005) TCGA-74-6581-01 12 57637537 57637537 C A STAC3 3'UTR 0.50 TCGA-74-6581-01 14 19378071 19378071 G A OR11H12 Missense_Mutation p.V160I 0.21 tolerated(0.15) benign(0.079) TCGA-74-6581-01 14 70263829 70263829 G A SLC10A1 Missense_Mutation p.P15L 0.44 deleterious(0) possibly_damaging(0.838) TCGA-74-6581-01 14 74444063 74444063 G A ENTPD5 Silent p.F152F 0.45 TCGA-74-6581-01 14 93723621 93723621 T A BTBD7 Nonsense_Mutation p.R510* 0.34 TCGA-74-6581-01 15 101438341 101438341 G A ALDH1A3 Silent p.T278T 0.44 TCGA-74-6581-01 15 77471649 77471649 G A PEAK1 Missense_Mutation p.R874C 0.43 deleterious(0) probably_damaging(0.944) TCGA-74-6581-01 16 30484116 30484116 T C ITGAL 5'UTR 0.42 TCGA-74-6581-01 16 538931 538931 C T RAB11FIP3 Missense_Mutation p.A399V 0.47 tolerated(0.53) benign(0.003) TCGA-74-6581-01 16 88705001 88705001 G A IL17C 5'UTR 0.58 TCGA-74-6581-01 17 33849729 33849729 G A SLFN12L 5'UTR 0.49 TCGA-74-6581-01 17 36869243 36869243 T C MLLT6 Intron 0.40 TCGA-74-6581-01 17 48696025 48696025 C T CACNA1G Missense_Mutation p.R1813W 0.44 deleterious(0) probably_damaging(1) TCGA-74-6581-01 18 47108071 47108071 A G LIPG Intron 0.57 TCGA-74-6581-01 19 17405129 17405129 C A ABHD8 Missense_Mutation p.V373L 0.26 deleterious(0) benign(0.444) TCGA-74-6581-01 19 22941753 22941753 T A ZNF99 Nonsense_Mutation p.K320* 0.34 TCGA-74-6581-01 19 40419980 40419980 T C FCGBP Missense_Mutation p.N1005S 0.45 probably_damaging(0.999) TCGA-74-6581-01 19 49378125 49378125 G A PPP1R15A Silent p.P545P 0.43 TCGA-74-6581-01 19 55148308 55148308 C T LILRB1 Silent p.Y646Y 0.49 TCGA-74-6581-01 19 55447658 55447658 T C NLRP7 Silent p.R757R 0.48 TCGA-74-6581-01 1 160851054 160851054 C T ITLN1 Missense_Mutation p.V152M 0.37 deleterious(0) probably_damaging(1) TCGA-74-6581-01 1 162546600 162546602 TTC - UAP1 In_Frame_Del p.L108del 0.43 TCGA-74-6581-01 1 32849629 32849629 G A BSDC1 Silent p.G70G 0.07 TCGA-74-6581-01 20 1277811 1277811 G A SNPH Missense_Mutation p.V25M 0.22 tolerated(0.17) benign(0.009) TCGA-74-6581-01 20 49194969 49194969 C A PTPN1 Silent p.R169R 0.20 TCGA-74-6581-01 2 102808507 102808507 G A IL1RL2 Missense_Mutation p.G139E 0.51 tolerated(0.06) possibly_damaging(0.78) TCGA-74-6581-01 2 130911283 130911283 T C SMPD4 Missense_Mutation p.I668V 0.37 tolerated(0.26) benign(0.112) TCGA-74-6581-01 2 207172772 207172772 C T ZDBF2 Nonsense_Mutation p.R1174* 0.39 TCGA-74-6581-01 2 233348905 233348905 C T ECEL1 Missense_Mutation p.V405M 0.41 tolerated(0.08) benign(0.116) TCGA-74-6581-01 2 33952900 33952900 G A AC009499.1 Intron 0.60 TCGA-74-6581-01 2 74596485 74596485 G A DCTN1 Missense_Mutation p.T509M 0.40 tolerated(0.14) benign(0.298) TCGA-74-6581-01 3 25660264 25660264 C T TOP2B Missense_Mutation p.R1042Q 0.50 deleterious(0) probably_damaging(0.999) TCGA-74-6581-01 3 38739794 38739794 G A SCN10A Silent p.D1639D 0.44 TCGA-74-6581-01 3 58510285 58510285 G A ACOX2 Missense_Mutation p.T465M 0.34 tolerated(0.15) benign(0.186) TCGA-74-6581-01 4 143129625 143129625 A C INPP4B Missense_Mutation p.I342R 0.41 deleterious(0.01) possibly_damaging(0.741) TCGA-74-6581-01 4 159747194 159747194 G A FNIP2 Silent p.Q78Q 0.41 TCGA-74-6581-01 4 55987356 55987356 A C KDR Silent p.G23G 0.38 TCGA-74-6581-01 4 81207513 81207513 G A FGF5 Missense_Mutation p.R165H 0.44 deleterious(0.03) probably_damaging(0.991) TCGA-74-6581-01 5 35670354 35670354 G C SPEF2 Intron 0.44 TCGA-74-6581-01 6 110531916 110531916 C G CDC40 Missense_Mutation p.Q213E 0.37 tolerated(0.55) benign(0.027) TCGA-74-6581-01 6 75799852 75799852 C G COL12A1 Missense_Mutation p.G2972A 0.42 probably_damaging(1) TCGA-74-6581-01 7 100029033 100029033 G A MEPCE Silent p.K464K 0.19 TCGA-74-6581-01 7 101847693 101847693 G A CUX1 Missense_Mutation p.S988N 0.28 deleterious(0) unknown(0) TCGA-74-6581-01 7 127014425 127014425 A G ZNF800 Missense_Mutation p.I322T 0.33 deleterious(0) benign(0.021) TCGA-74-6581-01 7 27187179 27187179 C T HOXA6 Missense_Mutation p.V64I 0.27 tolerated(0.18) benign(0.001) TCGA-74-6581-01 8 141557662 141557662 G A AGO2 Silent p.N551N 0.40 TCGA-74-6581-01 8 73849053 73849053 C T KCNB2 Missense_Mutation p.S488L 0.43 deleterious(0) probably_damaging(0.975) TCGA-74-6581-01 9 134365885 134365885 A T PRRC2B Intron 0.40 TCGA-74-6581-01 9 43628658 43628658 G A SPATA31A6 Missense_Mutation p.S95L 0.80 tolerated(0.74) benign(0) TCGA-74-6581-01 9 72785518 72785518 G T MAMDC2 Missense_Mutation p.G541V 0.53 deleterious(0.04) probably_damaging(0.995) TCGA-74-6581-01 9 73461394 73461394 G - TRPM3 Frame_Shift_Del p.F193Lfs*20 0.32 TCGA-74-6581-01 X 53245080 53245080 G A KDM5C Missense_Mutation p.S287L 0.80 tolerated(0.34) benign(0) TCGA-74-6584-01 10 104353785 104353785 G - SUFU Frame_Shift_Del p.G241Efs*26 0.38 TCGA-74-6584-01 10 105906078 105906078 A G WDR96 Silent p.S1266S 0.12 TCGA-74-6584-01 11 103908618 103908618 G A DDI1 Silent p.T356T 0.31 TCGA-74-6584-01 11 55735664 55735664 C T OR10AG1 Missense_Mutation p.M92I 0.11 deleterious(0.05) benign(0.092) TCGA-74-6584-01 12 94654582 94654582 A T PLXNC1 Missense_Mutation p.N1139I 0.46 deleterious(0) probably_damaging(0.999) TCGA-74-6584-01 13 111084708 111084708 G A COL4A2 Splice_Site p.X228_splice 0.26 TCGA-74-6584-01 14 106204085 106204085 C T IGHG1 3'UTR 0.12 TCGA-74-6584-01 15 44106722 44106722 G T MFAP1 Silent p.R198R 0.04 TCGA-74-6584-01 16 22149825 22149825 G A VWA3A Missense_Mutation p.A762T 0.32 tolerated(0.08) benign(0.082) TCGA-74-6584-01 17 26864216 26864216 C T FOXN1 Missense_Mutation p.S570L 0.24 deleterious(0.03) benign(0.185) TCGA-74-6584-01 18 225100 225100 T C THOC1 Missense_Mutation p.K376E 0.69 tolerated(0.49) benign(0.113) TCGA-74-6584-01 19 42187745 42187745 C T CEACAM7 Missense_Mutation p.R226H 0.30 tolerated(0.15) benign(0.066) TCGA-74-6584-01 19 54313743 54313743 G A NLRP12 Silent p.Y390Y 0.34 TCGA-74-6584-01 1 151789175 151789175 A G RORC Missense_Mutation p.L88P 0.13 deleterious(0) probably_damaging(1) TCGA-74-6584-01 1 152185788 152185788 C T HRNR Missense_Mutation p.G2773S 0.60 unknown(0) TCGA-74-6584-01 1 165738107 165738107 A T TMCO1 Missense_Mutation p.V12D 0.50 deleterious_low_confidence(0) possibly_damaging(0.692) TCGA-74-6584-01 1 180062525 180062525 T A CEP350 Missense_Mutation p.F2429I 0.37 benign(0.04) TCGA-74-6584-01 1 32049166 32049166 A C TINAGL1 Missense_Mutation p.H191P 0.43 deleterious(0) benign(0.044) TCGA-74-6584-01 1 3415819 3415819 G T MEGF6 Missense_Mutation p.H993N 0.27 tolerated(0.58) benign(0.002) TCGA-74-6584-01 1 3687985 3687985 C T CCDC27 Silent p.S623S 0.27 TCGA-74-6584-01 20 3128199 3128199 A C FASTKD5 Silent p.T506T 0.35 TCGA-74-6584-01 2 198643759 198643759 G A BOLL Missense_Mutation p.S66F 0.35 deleterious(0) possibly_damaging(0.741) TCGA-74-6584-01 2 99438371 99438371 G T KIAA1211L Missense_Mutation p.P789T 0.59 deleterious(0.01) possibly_damaging(0.735) TCGA-74-6584-01 3 101046635 101046635 T C SENP7 Missense_Mutation p.K964E 0.34 deleterious(0) possibly_damaging(0.731) TCGA-74-6584-01 3 151545690 151545690 A G AADAC Silent p.K310K 0.21 TCGA-74-6584-01 3 97806212 97806212 G A OR5AC2 Missense_Mutation p.G66S 0.29 tolerated(0.1) benign(0.251) TCGA-74-6584-01 4 146791485 146791485 G A ZNF827 Silent p.D631D 0.25 TCGA-74-6584-01 4 94750754 94750754 C T ATOH1 Missense_Mutation p.P226L 0.19 tolerated(0.08) benign(0.019) TCGA-74-6584-01 5 127624839 127624839 T C FBN2 Missense_Mutation p.Y2206C 0.35 tolerated(0.15) probably_damaging(0.926) TCGA-74-6584-01 5 55203287 55203287 C T IL31RA Silent p.G451G 0.39 TCGA-74-6584-01 6 116442879 116442879 G A AL121963.1 Missense_Mutation p.R87K 0.42 tolerated_low_confidence(1) unknown(0) TCGA-74-6584-01 6 27419109 27419109 T C ZNF184 Silent p.K743K 0.09 TCGA-74-6584-01 6 51947232 51947232 A G PKHD1 Missense_Mutation p.F80S 0.21 tolerated(1) benign(0) TCGA-74-6584-01 6 7581687 7581687 A T DSP Missense_Mutation p.Q1755L 0.28 probably_damaging(0.969) TCGA-74-6584-01 7 15599842 15599842 G T AGMO Missense_Mutation p.L61I 0.22 tolerated(0.39) benign(0.009) TCGA-74-6584-01 7 51287539 51287539 C A COBL Missense_Mutation p.Q48H 0.21 tolerated(0.18) benign(0.049) TCGA-74-6584-01 9 113703965 113703965 C T LPAR1 Missense_Mutation p.V177I 0.27 tolerated(1) benign(0.016) TCGA-74-6584-01 9 123930543 123930543 C G CNTRL Missense_Mutation p.T2005S 0.07 benign(0.004) TCGA-74-6584-01 9 96421820 96421820 C T PHF2 Missense_Mutation p.P423S 0.29 deleterious(0) unknown(0) TCGA-74-6584-01 X 105450536 105450536 G A MUM1L1 Missense_Mutation p.D371N 0.31 tolerated(0.54) benign(0.058) TCGA-74-6584-01 X 119589247 119589247 C A LAMP2 Missense_Mutation p.G121V 0.21 deleterious(0) benign(0.063) TCGA-74-6584-01 X 148037456 148037457 - A AFF2 Frame_Shift_Ins p.Q630Tfs*6 0.31 TCGA-74-6584-01 X 27999269 27999269 G A DCAF8L1 Silent p.N61N 0.35 TCGA-74-6584-01 X 48053576 48053576 C T SSX5 Missense_Mutation p.R131H 0.37 tolerated(0.38) benign(0.004) TCGA-76-4925-01 10 81052057 81052057 G A ZMIZ1 Missense_Mutation p.A301T 0.83 probably_damaging(0.993) TCGA-76-4925-01 10 88703548 88703548 G A MMRN2 Silent p.A331A 0.89 TCGA-76-4925-01 10 89717715 89717716 - A PTEN Frame_Shift_Ins p.P248Tfs*5 0.52 TCGA-76-4925-01 11 102822866 102822866 C T MMP13 Missense_Mutation p.G225D 0.40 deleterious(0) probably_damaging(1) TCGA-76-4925-01 11 14991572 14991572 C T CALCA Missense_Mutation p.E46K 0.54 deleterious(0.02) possibly_damaging(0.901) TCGA-76-4925-01 11 3681258 3681258 G A ART1 Missense_Mutation p.R170H 0.38 tolerated(0.17) benign(0.004) TCGA-76-4925-01 11 45274024 45274024 G A SYT13 Missense_Mutation p.T265I 0.48 tolerated(0.07) benign(0.002) TCGA-76-4925-01 11 56086116 56086116 C - OR8K3 Frame_Shift_Del p.L112Ffs*23 0.30 TCGA-76-4925-01 11 59629066 59629066 C T TCN1 Missense_Mutation p.A164T 0.44 tolerated(1) benign(0.001) TCGA-76-4925-01 11 59992462 59992462 C T MS4A4E Intron 0.50 TCGA-76-4925-01 11 62364206 62364206 C T MTA2 Missense_Mutation p.R262Q 0.43 deleterious(0) benign(0.01) TCGA-76-4925-01 11 64537728 64537728 T C SF1 Missense_Mutation p.K255R 0.45 tolerated(0.64) possibly_damaging(0.54) TCGA-76-4925-01 11 77921629 77921629 A C USP35 Missense_Mutation p.T910P 0.49 deleterious(0) probably_damaging(1) TCGA-76-4925-01 11 7960954 7960954 G A OR10A3 Silent p.T38T 0.39 TCGA-76-4925-01 12 112605619 112605619 T A HECTD4 Missense_Mutation p.K3958M 0.06 probably_damaging(0.992) TCGA-76-4925-01 12 247574 247574 C T IQSEC3 Missense_Mutation p.R349W 0.56 deleterious(0) probably_damaging(0.998) TCGA-76-4925-01 12 7882045 7882045 T C CLEC4C 3'UTR 0.73 TCGA-76-4925-01 12 7898972 7898972 C T CLEC4C Missense_Mutation p.V27I 0.46 tolerated(1) benign(0.001) TCGA-76-4925-01 14 50120778 50120778 G A POLE2 Missense_Mutation p.L381F 0.48 deleterious(0.01) benign(0.059) TCGA-76-4925-01 14 74531479 74531479 G A CCDC176 3'UTR 0.06 TCGA-76-4925-01 15 81598457 81598457 C G IL16 Missense_Mutation p.T1210S 0.47 tolerated(0.38) benign(0.001) TCGA-76-4925-01 16 1961835 1961835 C T HS3ST6 Missense_Mutation p.R231H 0.77 deleterious(0.02) benign(0.044) TCGA-76-4925-01 16 3554767 3554767 A G CLUAP1 Missense_Mutation p.M24V 0.91 tolerated(0.08) benign(0.129) TCGA-76-4925-01 16 81891938 81891938 G A PLCG2 Silent p.A136A 0.43 TCGA-76-4925-01 17 39567723 39567723 C T AC003958.2 RNA 0.45 TCGA-76-4925-01 17 62500099 62500102 ACAG - DDX5 Splice_Site p.X147_splice 0.44 TCGA-76-4925-01 17 72469709 72469709 G A CD300A Silent p.A25A 0.43 TCGA-76-4925-01 17 7577535 7577535 C G TP53 Missense_Mutation p.R249T 0.65 deleterious(0) probably_damaging(0.994) TCGA-76-4925-01 18 19762767 19762767 G A GATA6 Missense_Mutation p.R493Q 0.30 deleterious(0) probably_damaging(0.995) TCGA-76-4925-01 19 10434119 10434119 C T RAVER1 Missense_Mutation p.V311I 0.30 deleterious(0.03) benign(0.006) TCGA-76-4925-01 19 39908646 39908646 C G PLEKHG2 Silent p.P328P 0.80 TCGA-76-4925-01 19 4168400 4168400 C T CREB3L3 Missense_Mutation p.S256L 0.34 deleterious(0.02) probably_damaging(0.999) TCGA-76-4925-01 19 51453308 51453308 G A KLK5 Silent p.S46S 0.82 TCGA-76-4925-01 1 10699777 10699777 C T CASZ1 Missense_Mutation p.C1501Y 0.57 deleterious(0) probably_damaging(1) TCGA-76-4925-01 1 151787517 151787517 C T RORC Missense_Mutation p.R228Q 0.40 tolerated(1) benign(0.001) TCGA-76-4925-01 1 156849919 156849919 G A NTRK1 Silent p.K725K 0.40 TCGA-76-4925-01 1 161094314 161094314 G A DEDD Intron 0.53 TCGA-76-4925-01 1 36026428 36026431 AGTG - NCDN Frame_Shift_Del p.S226Rfs*47 0.43 TCGA-76-4925-01 1 45807217 45807217 C G TOE1 Silent p.A103A 0.42 TCGA-76-4925-01 1 85491656 85491656 A G MCOLN3 Missense_Mutation p.I354T 0.54 tolerated(0.44) benign(0.001) TCGA-76-4925-01 1 91739356 91739356 T C HFM1 Missense_Mutation p.I1229V 0.47 tolerated_low_confidence(0.38) benign(0.002) TCGA-76-4925-01 1 97847978 97847978 C A DPYD Missense_Mutation p.D649Y 0.32 deleterious(0) probably_damaging(0.995) TCGA-76-4925-01 20 5283350 5283350 C T PROKR2 Missense_Mutation p.R164Q 0.30 deleterious(0) probably_damaging(0.969) TCGA-76-4925-01 20 55206728 55206728 C A TFAP2C Missense_Mutation p.H172Q 0.35 tolerated(0.14) benign(0.002) TCGA-76-4925-01 22 22899229 22899229 T C PRAME Intron 0.83 TCGA-76-4925-01 2 120362804 120362805 - CACT PCDP1 Frame_Shift_Ins p.F360Tfs*3 0.42 TCGA-76-4925-01 2 137928455 137928455 G T THSD7B Missense_Mutation p.G557V 0.50 deleterious(0.01) probably_damaging(0.979) TCGA-76-4925-01 2 84676841 84676841 C T SUCLG1 Missense_Mutation p.A45T 0.39 tolerated_low_confidence(0.21) benign(0.003) TCGA-76-4925-01 2 99412664 99412664 C T KIAA1211L Missense_Mutation p.A890T 0.44 tolerated(0.51) benign(0.064) TCGA-76-4925-01 3 119373376 119373376 C T POPDC2 Silent p.Q192Q 0.38 TCGA-76-4925-01 3 128982760 128982760 A G COPG1 Missense_Mutation p.Q381R 0.40 tolerated(0.15) benign(0.035) TCGA-76-4925-01 3 129270200 129270200 G A H1FOO 3'UTR 0.38 TCGA-76-4925-01 3 147128086 147128086 G A ZIC1 Missense_Mutation p.A63T 0.54 tolerated(0.11) benign(0.296) TCGA-76-4925-01 3 150906259 150906259 C T MED12L Missense_Mutation p.P582L 0.43 deleterious(0) probably_damaging(0.994) TCGA-76-4925-01 3 64527058 64527058 G A ADAMTS9 Silent p.P1775P 0.44 TCGA-76-4925-01 3 74334529 74334529 C T CNTN3 Silent p.T877T 0.48 TCGA-76-4925-01 4 100805284 100805284 T G LAMTOR3 Splice_Site p.X80_splice 0.43 TCGA-76-4925-01 5 101815988 101815988 T A SLCO6A1 Missense_Mutation p.K170I 0.44 deleterious(0.01) benign(0.013) TCGA-76-4925-01 5 135692995 135692995 C T TRPC7 Silent p.R27R 0.48 TCGA-76-4925-01 5 140182972 140182972 C T PCDHA3 Silent p.G730G 0.45 TCGA-76-4925-01 5 32255876 32255876 T C MTMR12 Splice_Site p.X238_splice 0.35 TCGA-76-4925-01 6 147704054 147704054 G C STXBP5 Missense_Mutation p.G1112R 0.40 deleterious(0) probably_damaging(0.948) TCGA-76-4925-01 6 149912026 149912026 C T GINM1 3'UTR 0.09 TCGA-76-4925-01 6 29641071 29641071 C G ZFP57 Missense_Mutation p.E273Q 0.41 deleterious(0) probably_damaging(0.995) TCGA-76-4925-01 6 50681657 50681657 A T TFAP2D 5'UTR 0.81 TCGA-76-4925-01 7 10979661 10979661 C G NDUFA4 Missense_Mutation p.Q8H 0.21 tolerated(0.23) benign(0.03) TCGA-76-4925-01 7 126882860 126882860 A G GRM8 Silent p.C133C 0.27 TCGA-76-4925-01 7 130357671 130357671 G A TSGA13 Missense_Mutation p.R145C 0.29 tolerated(0.07) benign(0.068) TCGA-76-4925-01 7 142625188 142625188 G A TRPV5 Nonsense_Mutation p.R302* 0.32 TCGA-76-4925-01 7 151944990 151944990 T C KMT2C Silent p.K843K 0.07 TCGA-76-4925-01 7 21611464 21611464 G A DNAH11 Missense_Mutation p.R489K 0.27 benign(0.011) TCGA-76-4925-01 7 29539565 29539565 G A CHN2 Silent p.V274V 0.27 TCGA-76-4925-01 7 73472022 73472022 G A ELN Silent p.Q470Q 0.29 TCGA-76-4925-01 7 93091387 93091387 T C CALCR Missense_Mutation p.Y204C 0.19 deleterious_low_confidence(0.01) possibly_damaging(0.878) TCGA-76-4925-01 8 117738327 117738327 C T EIF3H Missense_Mutation p.E73K 0.40 tolerated(0.09) benign(0.257) TCGA-76-4925-01 8 144808899 144808899 C T FAM83H Missense_Mutation p.R911H 0.50 tolerated(0.11) benign(0.002) TCGA-76-4925-01 8 145773089 145773089 G A ARHGAP39 Missense_Mutation p.P461S 0.36 tolerated(0.51) benign(0.012) TCGA-76-4925-01 8 88884993 88884993 C T DCAF4L2 3'UTR 0.42 TCGA-76-4925-01 9 105763888 105763888 A T CYLC2 Missense_Mutation p.N16Y 0.44 deleterious(0) probably_damaging(0.998) TCGA-76-4925-01 9 130605418 130605418 G A ENG Silent p.P58P 0.48 TCGA-76-4925-01 9 19305352 19305352 G A DENND4C Missense_Mutation p.M438I 0.83 deleterious(0) possibly_damaging(0.885) TCGA-76-4925-01 9 34709216 34709216 G A CCL21 3'UTR 0.35 TCGA-76-4925-01 X 102004405 102004405 C T BHLHB9 Missense_Mutation p.P161L 0.94 tolerated(0.59) benign(0.003) TCGA-76-4925-01 X 134156181 134156181 C T FAM127C Silent p.R103R 0.86 TCGA-76-4926-01 10 24893240 24893240 C T ARHGAP21 Splice_Site p.X907_splice 0.56 TCGA-76-4926-01 10 24893252 24893252 T C ARHGAP21 Missense_Mutation p.K904E 0.56 tolerated(0.11) probably_damaging(0.994) TCGA-76-4926-01 11 118014756 118014756 C T SCN4B Silent p.K85K 0.27 TCGA-76-4926-01 11 118404798 118404798 C T TMEM25 Silent p.S297S 0.19 TCGA-76-4926-01 11 18051095 18051095 C T TPH1 Missense_Mutation p.R145Q 0.21 deleterious(0) probably_damaging(1) TCGA-76-4926-01 11 5842404 5842404 C G OR52N2 Missense_Mutation p.A280G 0.33 deleterious(0.04) probably_damaging(1) TCGA-76-4926-01 11 61541579 61541579 C G MYRF Missense_Mutation p.T419R 0.35 deleterious(0) probably_damaging(1) TCGA-76-4926-01 11 64056613 64056613 A C GPR137 Splice_Site p.X402_splice 0.39 TCGA-76-4926-01 11 8941093 8941093 C T AKIP1 3'UTR 0.44 TCGA-76-4926-01 12 104705084 104705084 G A TXNRD1 Missense_Mutation p.R144K 0.32 tolerated(1) benign(0.001) TCGA-76-4926-01 12 125609456 125609457 CA - AACS Frame_Shift_Del p.H399Qfs*57 0.34 TCGA-76-4926-01 12 27540171 27540171 G A ARNTL2 Missense_Mutation p.G192D 0.41 deleterious(0) probably_damaging(1) TCGA-76-4926-01 12 53663689 53663689 C T ESPL1 Silent p.V321V 0.29 TCGA-76-4926-01 15 42836285 42836285 G A LRRC57 Missense_Mutation p.A239V 0.24 tolerated(0.06) benign(0.296) TCGA-76-4926-01 15 77771653 77771653 G A HMG20A Missense_Mutation p.R347H 0.04 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-76-4926-01 15 81627093 81627093 G A TMC3 Silent p.V809V 0.37 TCGA-76-4926-01 16 21716537 21716537 C T OTOA Missense_Mutation p.A343V 0.40 tolerated(0.07) benign(0.065) TCGA-76-4926-01 16 30123709 30123709 C T GDPD3 Missense_Mutation p.R134H 0.35 tolerated(0.06) possibly_damaging(0.903) TCGA-76-4926-01 16 76350259 76350259 C T CNTNAP4 Intron 0.37 TCGA-76-4926-01 16 85952071 85952071 G A IRF8 Missense_Mutation p.G217D 0.36 tolerated(0.52) probably_damaging(1) TCGA-76-4926-01 17 26907060 26907064 GGAAG - RP11-192H23.4 Frame_Shift_Del p.F326Gfs*? 0.38 TCGA-76-4926-01 17 61571327 61571327 G A ACE Missense_Mutation p.A1061T 0.09 tolerated(0.07) possibly_damaging(0.698) TCGA-76-4926-01 17 7487095 7487095 G C MPDU1 5'UTR 0.37 TCGA-76-4926-01 18 60645528 60645528 C T PHLPP1 Missense_Mutation p.R1340C 0.35 deleterious(0) probably_damaging(0.997) TCGA-76-4926-01 19 17320489 17320489 C T MYO9B Missense_Mutation p.R1907C 0.35 tolerated(0.07) probably_damaging(0.957) TCGA-76-4926-01 19 1795945 1795945 C T ATP8B3 Missense_Mutation p.A662T 0.04 deleterious(0) probably_damaging(0.999) TCGA-76-4926-01 19 18870986 18870986 C T CRTC1 Silent p.T294T 0.26 TCGA-76-4926-01 19 43859911 43859911 G C CD177 3'UTR 0.37 TCGA-76-4926-01 1 1412700 1412700 G A ATAD3B Silent p.T84T 0.35 TCGA-76-4926-01 1 150049176 150049176 G A VPS45 Missense_Mutation p.R148Q 0.38 tolerated(0.6) benign(0.066) TCGA-76-4926-01 1 152733551 152733551 G A KPRP Missense_Mutation p.R496H 0.40 tolerated_low_confidence(0.15) benign(0.154) TCGA-76-4926-01 1 16044415 16044415 A G PLEKHM2 Missense_Mutation p.N102S 0.29 tolerated(0.28) benign(0.34) TCGA-76-4926-01 1 17034522 17034522 G C ESPNP RNA 0.17 TCGA-76-4926-01 1 238090866 238090866 T A RP11-193H5.1 RNA 0.33 TCGA-76-4926-01 1 245862232 245862232 G A KIF26B Missense_Mutation p.R2024H 0.33 deleterious(0) unknown(0) TCGA-76-4926-01 1 248059267 248059267 T G OR2W3 Missense_Mutation p.C127G 0.31 deleterious(0) benign(0.12) TCGA-76-4926-01 1 2524281 2524281 G A MMEL1 Silent p.D664D 0.50 TCGA-76-4926-01 1 45508897 45508897 A G ZSWIM5 Missense_Mutation p.W535R 0.22 deleterious(0) unknown(0) TCGA-76-4926-01 20 10630946 10630946 C T JAG1 Missense_Mutation p.G395R 0.36 deleterious(0.03) probably_damaging(0.973) TCGA-76-4926-01 20 34067060 34067060 G A CEP250 Missense_Mutation p.R700H 0.36 benign(0.001) TCGA-76-4926-01 22 20721910 20721910 G T USP41 Missense_Mutation p.F217L 0.13 tolerated(0.06) benign(0.159) TCGA-76-4926-01 22 50615939 50615939 C T PANX2 Silent p.D266D 0.11 TCGA-76-4926-01 2 127806075 127806075 C T BIN1 3'UTR 0.32 TCGA-76-4926-01 2 1457495 1457495 C T TPO Missense_Mutation p.T171M 0.36 deleterious(0.03) possibly_damaging(0.875) TCGA-76-4926-01 2 179438088 179438088 A G TTN Silent p.Y24257Y 0.15 TCGA-76-4926-01 2 89197127 89197127 C T IGKV5-2 Nonsense_Mutation p.Q58* 0.32 TCGA-76-4926-01 2 95601068 95601068 G A AC097374.2 RNA 0.53 TCGA-76-4926-01 3 48694272 48694272 G A CELSR3 Missense_Mutation p.R1420C 0.31 deleterious(0) probably_damaging(0.97) TCGA-76-4926-01 4 52862310 52862310 C A LRRC66 Missense_Mutation p.G293V 0.12 tolerated(0.17) benign(0.035) TCGA-76-4926-01 4 82126062 82126062 C T PRKG2 Missense_Mutation p.R47Q 0.33 tolerated(0.41) benign(0.005) TCGA-76-4926-01 5 1244838 1244838 C T SLC6A18 Silent p.L538L 0.37 TCGA-76-4926-01 5 140712004 140712004 G A PCDHGA1 Missense_Mutation p.G585S 0.34 deleterious_low_confidence(0.01) probably_damaging(0.999) TCGA-76-4926-01 5 6622137 6622137 G A NSUN2 Missense_Mutation p.P205L 0.42 deleterious(0.02) possibly_damaging(0.515) TCGA-76-4926-01 5 72866479 72866479 G T UTP15 Missense_Mutation p.G206W 0.40 deleterious(0) probably_damaging(1) TCGA-76-4926-01 5 72866480 72866480 G A UTP15 Missense_Mutation p.G206E 0.41 deleterious(0) probably_damaging(0.996) TCGA-76-4926-01 5 79026182 79026182 G A CMYA5 Missense_Mutation p.V532I 0.40 benign(0) TCGA-76-4926-01 6 26508920 26508920 A C BTN1A1 Silent p.R367R 0.04 TCGA-76-4926-01 6 36437942 36437942 A G KCTD20 Missense_Mutation p.D23G 0.38 tolerated_low_confidence(0.23) benign(0) TCGA-76-4926-01 6 50740520 50740520 C T TFAP2D Silent p.P434P 0.31 TCGA-76-4926-01 6 82924063 82924066 ACTA - IBTK Frame_Shift_Del p.S695Rfs*22 0.36 TCGA-76-4926-01 7 143748360 143748364 TCTAT ATCTAC OR2A5 Frame_Shift_Ins p.I289Nfs*34 0.14 TCGA-76-4926-01 7 18624954 18624954 G A HDAC9 Missense_Mutation p.D25N 0.26 deleterious(0) probably_damaging(0.999) TCGA-76-4926-01 7 34118619 34118619 G A BMPER Missense_Mutation p.R410H 0.26 deleterious(0) probably_damaging(0.915) TCGA-76-4926-01 7 55220274 55220274 C T EGFR Missense_Mutation p.R222C 0.04 deleterious(0) probably_damaging(1) TCGA-76-4926-01 7 55236239 55236239 G C EGFR Intron 0.16 TCGA-76-4926-01 7 72722785 72722785 C T NSUN5 Translation_Start_Site p.M1? 0.29 deleterious(0) unknown(0) TCGA-76-4926-01 8 104898339 104898339 C T RIMS2 Silent p.G504G 0.41 TCGA-76-4926-01 8 105257209 105257209 A T RIMS2 Missense_Mutation p.M1134L 0.36 tolerated_low_confidence(0.32) benign(0.109) TCGA-76-4926-01 8 134107297 134107297 G A TG Missense_Mutation p.A2417T 0.36 tolerated(0.08) benign(0.059) TCGA-76-4926-01 8 143999226 143999226 C T CYP11B2 Missense_Mutation p.V11M 0.40 tolerated(0.37) benign(0.001) TCGA-76-4926-01 8 145737371 145737371 G A RECQL4 Missense_Mutation p.R1106C 0.26 tolerated(0.2) benign(0.008) TCGA-76-4926-01 8 53570293 53570293 G A RB1CC1 Missense_Mutation p.T699M 0.37 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-76-4926-01 9 141012523 141012523 C G CACNA1B Nonsense_Mutation p.S1968* 0.29 TCGA-76-4926-01 9 16435843 16435843 G A BNC2 Silent p.Y783Y 0.43 TCGA-76-4926-01 9 18927959 18927959 A G FAM154A 3'UTR 0.40 TCGA-76-4926-01 9 71098902 71098902 G A PGM5 Missense_Mutation p.V473M 0.34 deleterious(0.01) probably_damaging(0.994) TCGA-76-4926-01 X 138908934 138908934 T C ATP11C Missense_Mutation p.N29D 0.81 deleterious(0.05) benign(0.098) TCGA-76-4926-01 X 3235282 3235282 C T MXRA5 Missense_Mutation p.R2147H 0.71 deleterious(0) benign(0.435) TCGA-76-4927-01 10 45602541 45602541 A G RSU1P2 RNA 0.51 TCGA-76-4927-01 10 89692902 89692902 G T PTEN Missense_Mutation p.G129V 0.13 deleterious(0) probably_damaging(1) TCGA-76-4927-01 11 1263896 1263896 C T MUC5B Missense_Mutation p.T1929I 0.31 unknown(0) TCGA-76-4927-01 11 5809803 5809803 T C OR52N1 Missense_Mutation p.N82D 0.24 deleterious(0) possibly_damaging(0.589) TCGA-76-4927-01 11 66189954 66189954 C T NPAS4 Silent p.Y120Y 0.27 TCGA-76-4927-01 12 104721416 104721416 G A TXNRD1 Silent p.L503L 0.30 TCGA-76-4927-01 12 88939597 88939597 G C KITLG Missense_Mutation p.P21A 0.26 deleterious(0.01) possibly_damaging(0.796) TCGA-76-4927-01 14 101506580 101506580 G A MIR654 RNA 0.26 TCGA-76-4927-01 14 91700886 91700886 C T GPR68 Missense_Mutation p.R170H 0.25 tolerated(0.15) benign(0.069) TCGA-76-4927-01 15 50534852 50534852 C T HDC Missense_Mutation p.G532S 0.25 tolerated_low_confidence(1) benign(0.001) TCGA-76-4927-01 16 4764084 4764084 G A ANKS3 Missense_Mutation p.P226L 0.33 tolerated(0.21) benign(0.004) TCGA-76-4927-01 17 39316492 39316492 C G KRTAP4-4 Missense_Mutation p.C151S 0.24 unknown(0) TCGA-76-4927-01 17 41244612 41244612 C T BRCA1 Missense_Mutation p.R979H 0.33 tolerated(1) benign(0) TCGA-76-4927-01 18 7231386 7231386 C T LRRC30 Missense_Mutation p.R84W 0.37 tolerated(0.18) possibly_damaging(0.809) TCGA-76-4927-01 19 12298584 12298584 G A ZNF136 Missense_Mutation p.R464Q 0.23 tolerated(0.95) probably_damaging(0.998) TCGA-76-4927-01 19 15574925 15574925 C T RASAL3 Missense_Mutation p.R82H 0.21 tolerated(0.08) benign(0.015) TCGA-76-4927-01 19 17375061 17375061 A C USHBP1 Silent p.A16A 0.18 TCGA-76-4927-01 19 35786738 35786738 G A MAG Missense_Mutation p.R90H 0.25 deleterious(0.03) benign(0.004) TCGA-76-4927-01 19 43372476 43372476 T A PSG1 Silent p.S340S 0.26 TCGA-76-4927-01 19 56538863 56538863 G A NLRP5 Missense_Mutation p.V422M 0.29 tolerated(0.07) possibly_damaging(0.462) TCGA-76-4927-01 19 57088760 57088760 C T ZNF470 Silent p.F321F 0.30 TCGA-76-4927-01 19 58024398 58024398 C T ZNF773 3'Flank 0.35 TCGA-76-4927-01 19 6420483 6420483 C T KHSRP Splice_Site p.X142_splice 0.24 TCGA-76-4927-01 1 147380445 147380445 C T GJA8 Silent p.N121N 0.34 TCGA-76-4927-01 1 154207187 154207187 C T UBAP2L Missense_Mutation p.R134C 0.28 deleterious(0) unknown(0) TCGA-76-4927-01 1 201058474 201058474 C T CACNA1S Missense_Mutation p.G271D 0.38 deleterious(0) probably_damaging(0.995) TCGA-76-4927-01 1 217824518 217824518 C A SPATA17 Missense_Mutation p.Q80K 0.25 tolerated(1) benign(0) TCGA-76-4927-01 1 232144583 232144583 C T DISC1 Nonsense_Mutation p.R699* 0.23 TCGA-76-4927-01 1 64059155 64059155 C T PGM1 5'UTR 0.29 TCGA-76-4927-01 1 7797314 7797314 G A CAMTA1 Splice_Site p.X1115_splice 0.06 TCGA-76-4927-01 20 23966561 23966561 C T GGTLC1 Missense_Mutation p.G119S 0.33 tolerated(0.07) benign(0.327) TCGA-76-4927-01 20 44841697 44841697 G A CDH22 Silent p.G323G 0.37 TCGA-76-4927-01 22 21742742 21742742 C G RIMBP3B Missense_Mutation p.P1532R 0.15 tolerated(0.1) probably_damaging(0.935) TCGA-76-4927-01 2 11911528 11911528 C T LPIN1 Missense_Mutation p.P156S 0.27 deleterious(0) probably_damaging(1) TCGA-76-4927-01 2 166897863 166897863 C T SCN1A Missense_Mutation p.V765M 0.34 deleterious(0) probably_damaging(1) TCGA-76-4927-01 2 238303590 238303590 G C COL6A3 Missense_Mutation p.Q117E 0.35 benign(0.017) TCGA-76-4927-01 2 240061423 240061423 G A HDAC4 Missense_Mutation p.A312V 0.04 tolerated(0.07) benign(0.043) TCGA-76-4927-01 2 24246495 24246495 C T MFSD2B Silent p.H404H 0.41 TCGA-76-4927-01 3 111603533 111603533 A C PHLDB2 Silent p.S203S 0.19 TCGA-76-4927-01 3 14862435 14862435 C T FGD5 Silent p.F619F 0.44 TCGA-76-4927-01 3 45812818 45812818 C T SLC6A20 Missense_Mutation p.A276T 0.28 tolerated(0.09) benign(0.081) TCGA-76-4927-01 4 154625003 154625003 G A TLR2 Missense_Mutation p.R315Q 0.04 tolerated(0.2) possibly_damaging(0.595) TCGA-76-4927-01 4 54294195 54294195 T C FIP1L1 Missense_Mutation p.V340A 0.28 tolerated(0.06) benign(0.298) TCGA-76-4927-01 4 77818025 77818025 G A SOWAHB Silent p.R326R 0.30 TCGA-76-4927-01 5 140202723 140202723 G A PCDHA5 Missense_Mutation p.A455T 0.35 tolerated_low_confidence(0.07) benign(0.04) TCGA-76-4927-01 5 163559 163559 G A PLEKHG4B Silent p.P768P 0.33 TCGA-76-4927-01 5 67575431 67575432 - A PIK3R1 Frame_Shift_Ins p.T169Nfs*16 0.10 TCGA-76-4927-01 6 13977261 13977261 T - RNF182 5'UTR 0.31 TCGA-76-4927-01 6 163510341 163510341 C T PACRG Missense_Mutation p.L172F 0.30 deleterious(0) probably_damaging(0.945) TCGA-76-4927-01 6 30899218 30899218 C T SFTA2 3'UTR 0.29 TCGA-76-4927-01 7 1522258 1522258 C T INTS1 Silent p.S1209S 0.24 TCGA-76-4927-01 7 156556439 156556439 C T LMBR1 Silent p.A158A 0.23 TCGA-76-4927-01 7 37890338 37890338 G A NME8 Splice_Site p.X66_splice 0.23 TCGA-76-4927-01 7 37924770 37924770 T A NME8 Nonsense_Mutation p.L388* 0.16 TCGA-76-4927-01 7 47854942 47854942 G A PKD1L1 Missense_Mutation p.P2360L 0.20 tolerated(0.3) benign(0.007) TCGA-76-4927-01 7 55220274 55220274 C T EGFR Missense_Mutation p.R222C 0.52 deleterious(0) probably_damaging(1) TCGA-76-4927-01 7 64452220 64452220 G A ERV3-1 Silent p.F395F 0.09 TCGA-76-4927-01 7 97364145 97364145 C T TAC1 Silent p.G91G 0.13 TCGA-76-4927-01 8 103220284 103220284 A C RRM2B 3'UTR 0.34 TCGA-76-4927-01 8 134107432 134107432 C T TG Missense_Mutation p.L2462F 0.24 deleterious(0.01) probably_damaging(0.959) TCGA-76-4927-01 8 30609013 30609013 A C UBXN8 RNA 0.27 TCGA-76-4927-01 9 130710496 130710496 G A FAM102A Missense_Mutation p.S157L 0.05 deleterious(0.04) benign(0.382) TCGA-76-4927-01 9 140777371 140777371 G A CACNA1B Intron 0.16 TCGA-76-4927-01 9 99800218 99800218 G C CTSV Missense_Mutation p.H36Q 0.30 deleterious(0.02) probably_damaging(0.912) TCGA-76-4927-01 X 101823383 101823383 G C NXF4 RNA 0.15 TCGA-76-4927-01 X 142717983 142717983 T A SLITRK4 Silent p.G314G 0.05 TCGA-76-4927-01 X 71895990 71895990 A G PHKA1 Missense_Mutation p.I183T 0.55 deleterious(0) possibly_damaging(0.89) TCGA-76-4927-01 X 7812090 7812090 C T VCX 3'UTR 0.30 TCGA-76-4927-01 X 8434457 8434457 C T VCX3B 3'UTR 0.43 TCGA-76-4928-01 11 110495025 110495025 T C ARHGAP20 Missense_Mutation p.N122D 0.12 deleterious(0.03) benign(0.309) TCGA-76-4928-01 11 117789400 117789400 C T TMPRSS13 Missense_Mutation p.A59T 0.22 tolerated_low_confidence(0.12) possibly_damaging(0.682) TCGA-76-4928-01 11 118530175 118530175 T C TREH Missense_Mutation p.T446A 0.20 tolerated(0.41) benign(0.032) TCGA-76-4928-01 11 25100153 25100153 A G LUZP2 Silent p.K330K 0.11 TCGA-76-4928-01 11 55655555 55655555 G T TRIM51 Missense_Mutation p.K185N 0.13 deleterious(0.02) possibly_damaging(0.468) TCGA-76-4928-01 11 6008217 6008217 G A OR52L1 5'Flank 0.25 TCGA-76-4928-01 12 27908375 27908375 G A MRPS35 Missense_Mutation p.V322M 0.13 deleterious(0.02) benign(0.117) TCGA-76-4928-01 12 4398029 4398029 C G CCND2 Missense_Mutation p.P198R 0.11 deleterious(0) probably_damaging(0.995) TCGA-76-4928-01 12 57864118 57864118 G A GLI1 Missense_Mutation p.R532H 0.20 tolerated(0.15) possibly_damaging(0.816) TCGA-76-4928-01 12 7470689 7470689 G A ACSM4 Missense_Mutation p.A278T 0.12 tolerated(0.09) possibly_damaging(0.532) TCGA-76-4928-01 12 85270346 85270346 A T SLC6A15 Missense_Mutation p.I266N 0.23 deleterious(0) benign(0.343) TCGA-76-4928-01 13 25263441 25263441 G A ATP12A Silent p.T158T 0.12 TCGA-76-4928-01 14 20767565 20767565 G A TTC5 Missense_Mutation p.R147C 0.18 deleterious(0) probably_damaging(0.999) TCGA-76-4928-01 14 77787058 77787058 A G POMT2 5'UTR 0.11 TCGA-76-4928-01 14 77948978 77948978 G A ISM2 Silent p.A220A 0.10 TCGA-76-4928-01 15 54542603 54542603 G A UNC13C Missense_Mutation p.E1137K 0.09 deleterious_low_confidence(0) possibly_damaging(0.614) TCGA-76-4928-01 16 70917889 70917889 C T HYDIN Missense_Mutation p.G3305S 0.25 benign(0.023) TCGA-76-4928-01 16 9857171 9857171 C T GRIN2A Silent p.S1410S 0.10 TCGA-76-4928-01 17 10316043 10316043 C T MYH8 Missense_Mutation p.A384T 0.23 deleterious(0.02) probably_damaging(0.979) TCGA-76-4928-01 17 28772878 28772881 TTAA - CPD Frame_Shift_Del p.I906Kfs*37 0.26 TCGA-76-4928-01 17 38080398 38080398 C T ORMDL3 Missense_Mutation p.R20H 0.22 deleterious(0.04) benign(0.187) TCGA-76-4928-01 17 40837035 40837035 G A CNTNAP1 Silent p.S130S 0.21 TCGA-76-4928-01 17 45788121 45788121 C T TBKBP1 3'UTR 0.21 TCGA-76-4928-01 17 57183893 57183893 G A TRIM37 5'UTR 0.19 TCGA-76-4928-01 17 66449078 66449078 C T WIPI1 Missense_Mutation p.E46K 0.22 deleterious(0) possibly_damaging(0.51) TCGA-76-4928-01 17 72368095 72368095 G A GPR142 Missense_Mutation p.A249T 0.23 tolerated(1) benign(0.037) TCGA-76-4928-01 17 73096420 73096420 G A SLC16A5 Missense_Mutation p.R221Q 0.20 tolerated(0.75) benign(0.007) TCGA-76-4928-01 17 7480924 7480924 C A EIF4A1 Missense_Mutation p.T269N 0.18 deleterious(0.05) probably_damaging(0.997) TCGA-76-4928-01 17 8741187 8741187 G A PIK3R6 Missense_Mutation p.A64V 0.10 deleterious(0.03) possibly_damaging(0.765) TCGA-76-4928-01 18 44260035 44260035 G A ST8SIA5 Silent p.R367R 0.24 TCGA-76-4928-01 18 63430143 63430143 C T CDH7 Missense_Mutation p.S22F 0.10 tolerated(0.73) benign(0.01) TCGA-76-4928-01 19 51330305 51330305 G A KLK15 Missense_Mutation p.R104C 0.24 deleterious(0) probably_damaging(0.912) TCGA-76-4928-01 19 56539657 56539657 C T NLRP5 Silent p.D686D 0.18 TCGA-76-4928-01 1 10555343 10555343 C G PEX14 Missense_Mutation p.P17A 0.14 tolerated(0.06) probably_damaging(0.994) TCGA-76-4928-01 1 115167981 115167981 G C DENND2C Missense_Mutation p.P209A 0.07 deleterious(0) probably_damaging(0.999) TCGA-76-4928-01 1 149785226 149785226 G C HIST2H3D Missense_Mutation p.T4S 0.18 deleterious_low_confidence(0) benign(0) TCGA-76-4928-01 1 152285914 152285914 C A FLG Missense_Mutation p.G483V 0.12 probably_damaging(0.998) TCGA-76-4928-01 1 154242707 154242707 C T UBAP2L Missense_Mutation p.S1067F 0.06 deleterious(0) probably_damaging(0.991) TCGA-76-4928-01 1 183486872 183486872 A G SMG7 Missense_Mutation p.K77E 0.03 deleterious(0.02) possibly_damaging(0.747) TCGA-76-4928-01 1 24180899 24180899 C T FUCA1 Missense_Mutation p.R307H 0.20 deleterious(0) benign(0.248) TCGA-76-4928-01 1 248436153 248436153 A G OR2T33 3'UTR 0.15 TCGA-76-4928-01 1 24932363 24932363 C T NCMAP 3'UTR 0.27 TCGA-76-4928-01 1 44084401 44084401 G A PTPRF Missense_Mutation p.R1491H 0.21 deleterious(0) probably_damaging(0.991) TCGA-76-4928-01 1 45797967 45797967 C T MUTYH Silent p.Q265Q 0.11 TCGA-76-4928-01 1 6184051 6184051 G C CHD5 Silent p.P1552P 0.24 TCGA-76-4928-01 20 2312692 2312692 C T TGM3 Missense_Mutation p.L460F 0.22 deleterious(0) possibly_damaging(0.726) TCGA-76-4928-01 20 36687859 36687859 C T RPRD1B Nonsense_Mutation p.R198* 0.09 TCGA-76-4928-01 20 36995435 36995435 G A LBP Missense_Mutation p.R315Q 0.19 tolerated(0.16) benign(0.2) TCGA-76-4928-01 20 40065924 40065924 T G CHD6 Missense_Mutation p.Q1353P 0.20 tolerated(0.46) benign(0.001) TCGA-76-4928-01 20 48098620 48098620 C T KCNB1 Missense_Mutation p.C133Y 0.11 deleterious(0) probably_damaging(0.999) TCGA-76-4928-01 21 32007616 32007616 C T KRTAP20-2 Missense_Mutation p.R12C 0.13 unknown(0) TCGA-76-4928-01 22 16279238 16279238 T C POTEH Missense_Mutation p.I329V 0.04 tolerated(0.4) probably_damaging(0.939) TCGA-76-4928-01 22 18912582 18912582 G A PRODH Missense_Mutation p.R217C 0.18 deleterious(0) possibly_damaging(0.687) TCGA-76-4928-01 22 22142632 22142632 T C MAPK1 Missense_Mutation p.N257S 0.26 tolerated(1) benign(0.221) TCGA-76-4928-01 22 37470715 37470715 C T TMPRSS6 Missense_Mutation p.G468E 0.22 deleterious(0) probably_damaging(1) TCGA-76-4928-01 2 103141552 103141552 C T SLC9A4 Missense_Mutation p.R630C 0.20 deleterious(0.01) possibly_damaging(0.858) TCGA-76-4928-01 2 160711043 160711043 C T LY75-CD302 Missense_Mutation p.R808H 0.11 deleterious(0.02) probably_damaging(0.984) TCGA-76-4928-01 2 21230333 21230333 C T APOB Missense_Mutation p.R3136H 0.19 benign(0.004) TCGA-76-4928-01 2 50573861 50573861 T C NRXN1 Intron 0.11 TCGA-76-4928-01 2 67631223 67631226 CAAA - ETAA1 Frame_Shift_Del p.K472Yfs*7 0.20 TCGA-76-4928-01 3 101451368 101451368 T G CEP97 Missense_Mutation p.L200V 0.20 deleterious(0) probably_damaging(0.988) TCGA-76-4928-01 3 111799811 111799811 G T TMPRSS7 Missense_Mutation p.W678C 0.20 deleterious(0) probably_damaging(0.999) TCGA-76-4928-01 3 168849257 168849257 G A MECOM Silent p.S67S 0.18 TCGA-76-4928-01 3 178916854 178916854 G A PIK3CA Missense_Mutation p.E81K 0.14 deleterious(0) probably_damaging(1) TCGA-76-4928-01 3 182870190 182870190 G A LAMP3 Silent p.G287G 0.16 TCGA-76-4928-01 3 194373563 194373563 C T LSG1 Silent p.Q356Q 0.13 TCGA-76-4928-01 3 36898731 36898731 C T TRANK1 Missense_Mutation p.D784N 0.24 deleterious(0) possibly_damaging(0.77) TCGA-76-4928-01 3 58849261 58849261 A G C3orf67 Intron 0.22 TCGA-76-4928-01 4 100208729 100208729 G A ADH1A Missense_Mutation p.R38C 0.20 deleterious(0.04) benign(0.377) TCGA-76-4928-01 4 155241881 155241881 G A DCHS2 Missense_Mutation p.T1102M 0.08 tolerated(0.17) benign(0.006) TCGA-76-4928-01 4 166964454 166964454 T C TLL1 Silent p.N469N 0.11 TCGA-76-4928-01 4 30725808 30725808 T C PCDH7 Missense_Mutation p.F922L 0.30 tolerated(0.64) possibly_damaging(0.882) TCGA-76-4928-01 4 71255518 71255518 G A SMR3B Missense_Mutation p.A65T 0.28 unknown(0) TCGA-76-4928-01 4 74364954 74364954 T A AFM Silent p.V471V 0.27 TCGA-76-4928-01 4 88091238 88091238 G A KLHL8 Silent p.Y510Y 0.13 TCGA-76-4928-01 5 127729056 127729056 A G FBN2 Missense_Mutation p.Y413H 0.16 tolerated(0.15) benign(0.002) TCGA-76-4928-01 5 136314406 136314406 G A SPOCK1 Silent p.A419A 0.21 TCGA-76-4928-01 5 140174848 140174848 C T PCDHA2 Missense_Mutation p.A100V 0.11 tolerated_low_confidence(0.15) benign(0.107) TCGA-76-4928-01 5 140531524 140531524 G A PCDHB6 Silent p.P562P 0.19 TCGA-76-4928-01 6 170592139 170592140 - TC DLL1 Frame_Shift_Ins p.D701Efs*20 0.08 TCGA-76-4928-01 6 31936254 31936254 G A SKIV2L Missense_Mutation p.R1003Q 0.23 tolerated(0.21) benign(0.121) TCGA-76-4928-01 6 38903432 38903432 A G DNAH8 Missense_Mutation p.E3624G 0.12 probably_damaging(0.991) TCGA-76-4928-01 6 51497434 51497434 A T PKHD1 Missense_Mutation p.L3865Q 0.25 deleterious(0) probably_damaging(0.914) TCGA-76-4928-01 7 112129963 112129963 C T LSMEM1 Nonsense_Mutation p.R119* 0.17 TCGA-76-4928-01 7 131817922 131817922 G A PLXNA4 Silent p.S1825S 0.20 TCGA-76-4928-01 7 138305867 138305867 G A SVOPL Missense_Mutation p.T426M 0.05 tolerated(0.06) benign(0.054) TCGA-76-4928-01 7 140453136 140453136 A T BRAF Missense_Mutation p.V600E 0.10 deleterious(0) probably_damaging(0.967) TCGA-76-4928-01 7 99821643 99821643 G A GATS Silent p.N91N 0.14 TCGA-76-4928-01 8 53853296 53853296 A G NPBWR1 Missense_Mutation p.T277A 0.19 tolerated(0.06) benign(0.345) TCGA-76-4928-01 8 99441064 99441064 C A KCNS2 Missense_Mutation p.T286N 0.24 tolerated(0.16) benign(0.293) TCGA-76-4928-01 9 126794913 126794913 C T LHX2 Missense_Mutation p.T383I 0.13 deleterious_low_confidence(0) probably_damaging(0.991) TCGA-76-4928-01 9 140374853 140374853 T C PNPLA7 Missense_Mutation p.T831A 0.07 tolerated(0.06) benign(0.13) TCGA-76-4928-01 9 97367792 97367792 C A FBP1 Missense_Mutation p.V258F 0.20 deleterious(0.02) benign(0.064) TCGA-76-4928-01 X 150885868 150885868 A T FATE1 Missense_Mutation p.K77N 0.22 tolerated(0.08) probably_damaging(0.99) TCGA-76-4928-01 X 3021841 3021841 G A ARSF Missense_Mutation p.V381I 0.18 tolerated(0.06) probably_damaging(0.999) TCGA-76-4928-01 X 79999713 79999713 C T BRWD3 Missense_Mutation p.D211N 0.25 tolerated(0.34) benign(0.019) TCGA-76-4929-01 10 104934623 104934623 G A NT5C2 Silent p.A31A 0.05 TCGA-76-4929-01 10 21112168 21112168 C T NEBL Missense_Mutation p.R644K 0.73 deleterious(0.01) benign(0.042) TCGA-76-4929-01 10 37414815 37414815 G A ANKRD30A 5'UTR 0.56 TCGA-76-4929-01 10 48390589 48390589 C T RBP3 Missense_Mutation p.E97K 0.77 tolerated(0.87) benign(0.275) TCGA-76-4929-01 10 64564912 64564912 C T ADO Silent p.S31S 1.00 TCGA-76-4929-01 11 64012069 64012069 T A PPP1R14B 3'UTR 0.24 TCGA-76-4929-01 12 113425127 113425127 G A OAS2 Intron 0.37 TCGA-76-4929-01 12 117962680 117962680 C T KSR2 Silent p.P732P 0.37 TCGA-76-4929-01 12 130184667 130184667 G A TMEM132D Missense_Mutation p.P219L 0.34 tolerated(0.85) benign(0.002) TCGA-76-4929-01 12 18544153 18544153 T C PIK3C2G Missense_Mutation p.I657T 0.47 deleterious(0) benign(0.417) TCGA-76-4929-01 14 22932771 22932771 G A TRDC Missense_Mutation p.V96I 0.67 tolerated(0.34) benign(0.003) TCGA-76-4929-01 14 42356720 42356720 G T LRFN5 Missense_Mutation p.V298F 0.73 deleterious(0) probably_damaging(0.97) TCGA-76-4929-01 14 93650454 93650454 G A MOAP1 Missense_Mutation p.P45L 0.80 tolerated(0.11) benign(0.132) TCGA-76-4929-01 16 24581488 24581489 TT - RBBP6 Frame_Shift_Del p.F1160* 0.30 TCGA-76-4929-01 16 54967470 54967470 C T IRX5 Silent p.A379A 0.45 TCGA-76-4929-01 16 78064624 78064624 C T CLEC3A Silent p.N169N 0.32 TCGA-76-4929-01 17 1631491 1631491 C T WDR81 Missense_Mutation p.P1080S 0.44 tolerated(0.55) benign(0.011) TCGA-76-4929-01 17 39661389 39661389 G A KRT13 Silent p.D138D 0.40 TCGA-76-4929-01 17 43320637 43320637 C T FMNL1 Silent p.T721T 0.33 TCGA-76-4929-01 17 63193312 63193312 C T RGS9 Missense_Mutation p.P310L 0.06 tolerated(0.06) possibly_damaging(0.806) TCGA-76-4929-01 17 7253543 7253543 G A ACAP1 Missense_Mutation p.D687N 0.45 deleterious(0) probably_damaging(0.998) TCGA-76-4929-01 17 7574003 7574003 G A TP53 Nonsense_Mutation p.R342* 0.53 TCGA-76-4929-01 17 7578476 7578476 G A TP53 Missense_Mutation p.P152S 0.43 deleterious(0) probably_damaging(0.997) TCGA-76-4929-01 17 8170745 8170745 G A PFAS Silent p.R1077R 0.42 TCGA-76-4929-01 19 10405102 10405102 C A ICAM5 Silent p.T672T 0.80 TCGA-76-4929-01 19 1086046 1086046 C T HMHA1 3'UTR 0.85 TCGA-76-4929-01 1 1147004 1147004 C T TNFRSF4 Silent p.G255G 0.24 TCGA-76-4929-01 1 152944632 152944632 C T SPRR4 3'UTR 0.41 TCGA-76-4929-01 1 160162639 160162639 A T CASQ1 Silent p.V109V 0.38 TCGA-76-4929-01 1 173010533 173010533 G A TNFSF18 Silent p.L192L 0.40 TCGA-76-4929-01 1 197887088 197887088 C T LHX9 Silent p.A45A 0.34 TCGA-76-4929-01 1 40030160 40030160 C T PABPC4 Missense_Mutation p.R463H 0.37 tolerated(0.21) possibly_damaging(0.512) TCGA-76-4929-01 20 25597030 25597030 G C NANP Missense_Mutation p.A93G 0.32 deleterious(0.03) possibly_damaging(0.64) TCGA-76-4929-01 20 60509217 60509217 C T CDH4 Missense_Mutation p.P828L 0.35 deleterious(0) probably_damaging(0.969) TCGA-76-4929-01 20 61341151 61341151 C A NTSR1 Missense_Mutation p.L198M 0.39 tolerated(0.21) probably_damaging(0.951) TCGA-76-4929-01 22 17450832 17450832 C T GAB4 Splice_Site p.X313_splice 0.78 TCGA-76-4929-01 22 32234828 32234828 C T DEPDC5 Nonsense_Mutation p.R829* 0.70 TCGA-76-4929-01 22 36003312 36003312 C G MB 3'UTR 0.84 TCGA-76-4929-01 2 131520666 131520666 C T AMER3 Missense_Mutation p.R341W 0.35 deleterious(0) probably_damaging(0.995) TCGA-76-4929-01 2 170558142 170558142 T C PHOSPHO2 Missense_Mutation p.S221P 0.48 deleterious(0.02) possibly_damaging(0.588) TCGA-76-4929-01 2 192248067 192248067 A T MYO1B Missense_Mutation p.N451I 0.42 deleterious(0.02) probably_damaging(0.974) TCGA-76-4929-01 2 202609022 202609022 C G ALS2 Missense_Mutation p.S710T 0.34 tolerated(0.68) benign(0.326) TCGA-76-4929-01 2 219254613 219254613 C T SLC11A1 Silent p.A272A 0.51 TCGA-76-4929-01 2 26457099 26457099 C T HADHA Missense_Mutation p.G147R 0.29 deleterious(0) probably_damaging(0.996) TCGA-76-4929-01 2 50282126 50282126 C A NRXN1 Missense_Mutation p.G1299C 0.28 deleterious(0.01) probably_damaging(1) TCGA-76-4929-01 2 63283478 63283478 C T OTX1 3'UTR 0.38 TCGA-76-4929-01 2 95542558 95542558 C T TEKT4 3'UTR 0.47 TCGA-76-4929-01 3 183962404 183962404 G A ALG3 Silent p.I237I 0.18 TCGA-76-4929-01 3 49737157 49737157 C T RNF123 Silent p.T312T 0.53 TCGA-76-4929-01 4 155529787 155529787 C T FGG Missense_Mutation p.V228I 0.29 tolerated(0.06) benign(0.096) TCGA-76-4929-01 4 55131090 55131090 A G PDGFRA Silent p.T211T 0.04 TCGA-76-4929-01 4 62363023 62363023 G A LPHN3 Silent p.S4S 0.46 TCGA-76-4929-01 4 71888254 71888254 T G DCK Missense_Mutation p.F126L 0.40 tolerated(0.06) benign(0.38) TCGA-76-4929-01 4 79507428 79507428 C T ANXA3 Silent p.N109N 0.38 TCGA-76-4929-01 5 121187720 121187720 C T FTMT Missense_Mutation p.P21L 0.54 tolerated_low_confidence(0.14) benign(0.006) TCGA-76-4929-01 5 159842130 159842130 A - SLU7 Splice_Site p.X57_splice 0.22 TCGA-76-4929-01 5 160721269 160721269 C T GABRB2 Missense_Mutation p.R453Q 0.25 deleterious(0.03) benign(0.298) TCGA-76-4929-01 5 17275370 17275370 C T BASP1 Silent p.N15N 0.37 TCGA-76-4929-01 5 180377632 180377632 C T BTNL8 3'UTR 0.31 TCGA-76-4929-01 5 181778 181778 G A PLEKHG4B Missense_Mutation p.V1162I 0.15 tolerated(0.07) benign(0.001) TCGA-76-4929-01 5 19721516 19721516 C T CDH18 Missense_Mutation p.A195T 0.52 deleterious(0.02) probably_damaging(0.994) TCGA-76-4929-01 5 67575468 67575468 G - PIK3R1 Frame_Shift_Del p.V181Ffs*26 0.43 TCGA-76-4929-01 6 32097113 32097113 C T FKBPL Missense_Mutation p.G149R 0.75 deleterious(0) probably_damaging(0.995) TCGA-76-4929-01 6 42883805 42883805 G A PTCRA 5'UTR 0.68 TCGA-76-4929-01 6 51890856 51890856 G T PKHD1 Missense_Mutation p.T1251N 0.33 deleterious(0) probably_damaging(0.998) TCGA-76-4929-01 7 101926494 101926494 C T SH2B2 5'Flank 0.50 TCGA-76-4929-01 7 139824534 139824534 C T KDM7A Missense_Mutation p.R313H 0.27 deleterious(0) possibly_damaging(0.57) TCGA-76-4929-01 7 141765179 141765179 G A MGAM Missense_Mutation p.R1510H 0.66 deleterious(0) probably_damaging(1) TCGA-76-4929-01 7 142658027 142658027 G A KEL Missense_Mutation p.R130W 0.32 tolerated(0.16) benign(0.075) TCGA-76-4929-01 7 70597844 70597844 C T WBSCR17 Missense_Mutation p.A19V 0.07 tolerated_low_confidence(1) probably_damaging(0.935) TCGA-76-4929-01 7 73791076 73791076 G A CLIP2 Missense_Mutation p.S782N 0.36 tolerated(0.09) benign(0.024) TCGA-76-4929-01 7 91711915 91711915 C - AKAP9 Frame_Shift_Del p.A2700Vfs*22 0.20 TCGA-76-4929-01 8 24813390 24813390 C T CTD-2168K21.2 5'Flank 0.41 TCGA-76-4929-01 9 112189356 112189356 C T PTPN3 Missense_Mutation p.R292Q 0.36 deleterious(0) probably_damaging(0.958) TCGA-76-4929-01 9 116268773 116268773 G A RGS3 Missense_Mutation p.R362Q 0.33 deleterious(0) probably_damaging(0.99) TCGA-76-4929-01 9 34343182 34343182 C T NUDT2 Missense_Mutation p.A63V 0.36 deleterious(0) possibly_damaging(0.8) TCGA-76-4929-01 9 5185459 5185459 G A INSL6 Silent p.A48A 0.68 TCGA-76-4929-01 9 88633637 88633637 T C NAA35 Silent p.Y646Y 0.45 TCGA-76-4929-01 X 100117739 100117739 G A NOX1 Silent p.S136S 0.27 TCGA-76-4929-01 X 102004877 102004877 C T BHLHB9 Silent p.C318C 0.54 TCGA-76-4929-01 X 11272748 11272748 T C ARHGAP6 Missense_Mutation p.E223G 0.04 deleterious(0) probably_damaging(1) TCGA-76-4929-01 X 151093031 151093031 C T MAGEA4 Missense_Mutation p.R299C 0.27 deleterious(0.02) benign(0.004) TCGA-76-4929-01 X 18627018 18627018 C T CDKL5 Missense_Mutation p.R678C 0.25 deleterious_low_confidence(0) possibly_damaging(0.876) TCGA-76-4929-01 X 2799206 2799206 G A GYG2 Silent p.K486K 0.27 TCGA-76-4929-01 X 29972739 29972739 A G IL1RAPL1 Silent p.L434L 0.25 TCGA-76-4929-01 X 3229254 3229254 G A MXRA5 Silent p.V2330V 0.28 TCGA-76-4929-01 X 38280390 38280390 G T OTC 3'UTR 0.31 TCGA-76-4929-01 X 48831638 48831638 G A GRIPAP1 Missense_Mutation p.L788F 0.25 probably_damaging(0.987) TCGA-76-4931-01 10 112350788 112350788 G A SMC3 Silent p.T570T 0.82 TCGA-76-4931-01 10 89712007 89712007 G T PTEN Nonsense_Mutation p.G209* 0.77 TCGA-76-4931-01 10 95718836 95718836 A G PIPSL RNA 0.86 TCGA-76-4931-01 11 35747531 35747531 G A TRIM44 Silent p.V269V 0.60 TCGA-76-4931-01 11 60665709 60665709 G A PRPF19 Missense_Mutation p.S392L 0.42 tolerated(0.06) benign(0.147) TCGA-76-4931-01 11 67430631 67430631 C T ALDH3B2 3'UTR 0.47 TCGA-76-4931-01 11 93778980 93778980 G A HEPHL1 Silent p.L104L 0.48 TCGA-76-4931-01 12 117703242 117703242 C T NOS1 Missense_Mutation p.R672H 0.35 deleterious(0.02) benign(0.01) TCGA-76-4931-01 12 48723848 48723848 G A H1FNT 3'UTR 0.48 TCGA-76-4931-01 12 55688853 55688853 G A OR6C6 Missense_Mutation p.T55M 0.46 deleterious_low_confidence(0.01) benign(0.149) TCGA-76-4931-01 12 63543656 63543656 C T AVPR1A Missense_Mutation p.V321I 0.32 tolerated(0.09) benign(0.003) TCGA-76-4931-01 13 27332980 27332980 G A GPR12 Missense_Mutation p.R329C 0.47 deleterious(0.01) benign(0.11) TCGA-76-4931-01 14 105415138 105415138 A C AHNAK2 Missense_Mutation p.V2217G 0.48 benign(0.188) TCGA-76-4931-01 14 106208378 106208378 C T IGHG1 Silent p.P174P 0.41 TCGA-76-4931-01 14 24795366 24795366 C T ADCY4 Missense_Mutation p.R525H 0.26 tolerated(0.19) possibly_damaging(0.837) TCGA-76-4931-01 14 88431916 88431916 G A GALC Silent p.C322C 0.05 TCGA-76-4931-01 15 23810982 23810982 C T MKRN3 Missense_Mutation p.A18V 0.32 tolerated(0.17) unknown(0) TCGA-76-4931-01 15 73562540 73562540 G A NEO1 Nonsense_Mutation p.W895* 0.45 TCGA-76-4931-01 16 14968903 14968903 G A NOMO1 Missense_Mutation p.D689N 0.45 tolerated(0.13) benign(0.032) TCGA-76-4931-01 16 23366788 23366788 G A SCNN1B Missense_Mutation p.G252R 0.23 deleterious(0.01) probably_damaging(0.984) TCGA-76-4931-01 16 28914740 28914740 G A ATP2A1 Missense_Mutation p.V987I 0.28 tolerated(0.6) benign(0.006) TCGA-76-4931-01 17 7722376 7722376 C T DNAH2 Missense_Mutation p.R3604W 0.42 probably_damaging(0.999) TCGA-76-4931-01 19 1005285 1005285 C T GRIN3B Silent p.Y595Y 0.48 TCGA-76-4931-01 19 18900784 18900784 C T COMP Silent p.T119T 0.33 TCGA-76-4931-01 19 7809880 7809880 C T CD209 Missense_Mutation p.A283T 0.50 deleterious(0.02) probably_damaging(0.954) TCGA-76-4931-01 1 147955205 147955205 C T PPIAL4A Missense_Mutation p.R47H 0.74 tolerated_low_confidence(0.05) benign(0) TCGA-76-4931-01 1 154542048 154542048 C T CHRNB2 Nonsense_Mutation p.Q59* 0.41 TCGA-76-4931-01 1 16374889 16374889 C T CLCNKB Missense_Mutation p.R184C 0.27 tolerated(0.17) benign(0.022) TCGA-76-4931-01 1 228564849 228564849 A G OBSCN Silent p.A8669A 0.18 TCGA-76-4931-01 1 237656328 237656328 C A RYR2 Missense_Mutation p.D634E 0.53 benign(0.416) TCGA-76-4931-01 1 238050695 238050695 A G ZP4 Silent p.T240T 0.39 TCGA-76-4931-01 1 247712494 247712494 A G GCSAML Translation_Start_Site p.M1? 0.30 deleterious(0.01) benign(0.14) TCGA-76-4931-01 1 38455662 38455662 T G SF3A3 5'UTR 0.38 TCGA-76-4931-01 20 34092288 34092288 C G CEP250 Missense_Mutation p.L2031V 0.45 benign(0.159) TCGA-76-4931-01 22 24579586 24579586 C T SUSD2 Silent p.S137S 0.39 TCGA-76-4931-01 22 30766543 30766543 G A CCDC157 Missense_Mutation p.A217T 0.42 deleterious(0.03) probably_damaging(0.995) TCGA-76-4931-01 22 30951178 30951178 C T GAL3ST1 Missense_Mutation p.C345Y 0.59 deleterious(0) probably_damaging(1) TCGA-76-4931-01 22 37882098 37882098 C T MFNG Missense_Mutation p.E40K 0.48 tolerated(0.5) benign(0.004) TCGA-76-4931-01 2 179474028 179474028 G A TTN Nonsense_Mutation p.R17337* 0.61 TCGA-76-4931-01 2 183291501 183291501 A G PDE1A Intron 0.47 TCGA-76-4931-01 2 25469968 25469968 C T DNMT3A Silent p.T358T 0.43 TCGA-76-4931-01 2 27305999 27305999 G A EMILIN1 Silent p.T520T 0.47 TCGA-76-4931-01 2 31571198 31571198 C T XDH Missense_Mutation p.G1028D 0.32 deleterious(0) probably_damaging(0.997) TCGA-76-4931-01 2 64863694 64863694 C T SERTAD2 Silent p.P104P 0.52 TCGA-76-4931-01 4 188924640 188924640 G A ZFP42 Missense_Mutation p.V227I 0.44 tolerated(0.24) benign(0) TCGA-76-4931-01 5 140590123 140590123 C T PCDHB12 Silent p.R548R 0.32 TCGA-76-4931-01 5 161113339 161113339 C T GABRA6 Missense_Mutation p.R48W 0.41 deleterious(0) probably_damaging(0.999) TCGA-76-4931-01 7 106508432 106508432 G A PIK3CG Silent p.P142P 0.40 TCGA-76-4931-01 7 144015575 144015575 G A OR2A1 Missense_Mutation p.D120N 0.11 deleterious(0) probably_damaging(0.985) TCGA-76-4931-01 7 1485031 1485031 C T MICALL2 Silent p.G225G 0.29 TCGA-76-4931-01 7 2984147 2984147 G C CARD11 Missense_Mutation p.T128R 0.25 deleterious(0) probably_damaging(0.987) TCGA-76-4931-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.95 deleterious(0) possibly_damaging(0.75) TCGA-76-4931-01 7 99091031 99091031 C T ZNF394 3'UTR 0.33 TCGA-76-4931-01 8 39613418 39613418 G A ADAM2 Silent p.C542C 0.38 TCGA-76-4931-01 9 129453336 129453336 A G LMX1B Missense_Mutation p.E183G 0.27 tolerated(0.35) benign(0.039) TCGA-76-4931-01 X 15266989 15266989 C A ASB9 Nonsense_Mutation p.E213* 0.40 TCGA-76-4931-01 X 153236126 153236126 C G HCFC1 Missense_Mutation p.V56L 0.36 deleterious(0.04) probably_damaging(0.97) TCGA-76-4931-01 X 2799104 2799104 C T GYG2 Silent p.A452A 0.60 TCGA-76-4931-01 X 70830605 70830605 G A ACRC Missense_Mutation p.M562I 0.60 unknown(0) TCGA-76-4932-01 11 113661638 113661638 G A ATF4P4 RNA 0.40 TCGA-76-4932-01 11 55340484 55340484 G A OR4C16 Missense_Mutation p.S294N 0.46 tolerated(1) benign(0.001) TCGA-76-4932-01 11 56058035 56058035 G A OR8H1 Silent p.C168C 0.38 TCGA-76-4932-01 11 59368009 59368009 T C OSBP Missense_Mutation p.K424R 0.43 deleterious(0.04) probably_damaging(0.989) TCGA-76-4932-01 11 66328735 66328737 AGG - CTSF 3'Flank 0.27 TCGA-76-4932-01 11 89882229 89882229 A G NAALAD2 Missense_Mutation p.N146S 0.38 tolerated(0.2) benign(0.001) TCGA-76-4932-01 12 111322003 111322003 G A CCDC63 Silent p.T341T 0.38 TCGA-76-4932-01 12 130934752 130934752 G A RIMBP2 Missense_Mutation p.R175C 0.37 deleterious(0) probably_damaging(0.996) TCGA-76-4932-01 12 133198667 133198667 G A P2RX2 3'Flank 0.30 TCGA-76-4932-01 12 47163175 47163175 G A SLC38A4 Nonsense_Mutation p.R446* 0.42 TCGA-76-4932-01 12 7310162 7310162 C T CLSTN3 Missense_Mutation p.R869C 0.44 deleterious(0) probably_damaging(0.998) TCGA-76-4932-01 13 31232152 31232152 A G USPL1 Silent p.Q646Q 0.36 TCGA-76-4932-01 14 21216002 21216002 G A EDDM3A Missense_Mutation p.R88Q 0.44 deleterious(0.01) probably_damaging(0.995) TCGA-76-4932-01 14 70714389 70714389 C T ADAM21P1 RNA 0.31 TCGA-76-4932-01 15 101853660 101853660 C T PCSK6 Missense_Mutation p.D873N 0.42 tolerated(0.2) benign(0.044) TCGA-76-4932-01 15 23811039 23811039 C A MKRN3 Missense_Mutation p.P37H 0.38 deleterious(0.01) benign(0.004) TCGA-76-4932-01 15 52075020 52075020 G C TMOD2 Missense_Mutation p.A243P 0.41 deleterious(0) probably_damaging(0.995) TCGA-76-4932-01 15 83455346 83455346 T C FSD2 Missense_Mutation p.K218E 0.44 tolerated(0.35) possibly_damaging(0.67) TCGA-76-4932-01 16 1279648 1279648 C T TPSB2 Missense_Mutation p.R51H 0.40 tolerated(0.51) benign(0.001) TCGA-76-4932-01 16 30748891 30748894 TCAT - SRCAP Frame_Shift_Del p.T2512Rfs*9 0.49 TCGA-76-4932-01 16 76461484 76461484 G A CNTNAP4 Missense_Mutation p.G151R 0.48 deleterious(0) probably_damaging(0.974) TCGA-76-4932-01 17 39593695 39593695 C T KRT38 Missense_Mutation p.C447Y 0.10 tolerated(0.16) unknown(0) TCGA-76-4932-01 19 19654993 19654993 G A CILP2 Missense_Mutation p.V547M 0.41 deleterious(0) probably_damaging(0.987) TCGA-76-4932-01 19 3834818 3834818 G A ZFR2 Nonsense_Mutation p.R73* 0.41 TCGA-76-4932-01 19 53085986 53085986 A G ZNF701 Missense_Mutation p.N291S 0.32 tolerated(0.5) probably_damaging(0.987) TCGA-76-4932-01 19 54782295 54782295 C T LILRB2 Silent p.A359A 0.38 TCGA-76-4932-01 1 110172108 110172108 C T AMPD2 Missense_Mutation p.R674C 0.03 deleterious(0) probably_damaging(1) TCGA-76-4932-01 1 152281686 152281686 G A FLG Silent p.A1892A 0.21 TCGA-76-4932-01 1 153177307 153177307 C T LELP1 Missense_Mutation p.R42C 0.58 deleterious_low_confidence(0) probably_damaging(0.942) TCGA-76-4932-01 1 154067448 154067448 T C NUP210L Missense_Mutation p.Y717C 0.56 deleterious(0) probably_damaging(0.977) TCGA-76-4932-01 1 213181756 213181756 C T ANGEL2 Silent p.T146T 0.59 TCGA-76-4932-01 1 228557749 228557749 G A OBSCN Missense_Mutation p.E7649K 0.30 benign(0.017) TCGA-76-4932-01 1 3425698 3425698 A G MEGF6 Missense_Mutation p.V490A 0.15 tolerated(0.49) benign(0) TCGA-76-4932-01 20 43933173 43933173 G A MATN4 Missense_Mutation p.T113M 0.32 probably_damaging(0.996) TCGA-76-4932-01 20 55093243 55093243 C G RTFDC1 Silent p.L281L 0.37 TCGA-76-4932-01 21 34625094 34625094 C T IFNAR2 Missense_Mutation p.S223F 0.36 deleterious(0) probably_damaging(1) TCGA-76-4932-01 21 45859043 45859043 G A TRPM2 Missense_Mutation p.G1421S 0.33 deleterious(0.04) probably_damaging(1) TCGA-76-4932-01 21 45948411 45948411 G A TSPEAR Silent p.D282D 0.39 TCGA-76-4932-01 22 22842526 22842526 C T ZNF280B Missense_Mutation p.E400K 0.41 deleterious(0.02) probably_damaging(0.954) TCGA-76-4932-01 22 50596602 50596602 C T MOV10L1 Silent p.S1061S 0.39 TCGA-76-4932-01 2 103335600 103335600 C T MFSD9 Missense_Mutation p.R235Q 0.42 tolerated(0.59) benign(0.067) TCGA-76-4932-01 2 108626880 108626880 G A SLC5A7 Missense_Mutation p.V436M 0.42 tolerated(0.08) benign(0.095) TCGA-76-4932-01 2 135958008 135958008 T C ZRANB3 Silent p.R1048R 0.48 TCGA-76-4932-01 2 180810270 180810270 A G CWC22 Silent p.N771N 0.37 TCGA-76-4932-01 2 223161799 223161799 C T PAX3 Silent p.S73S 0.41 TCGA-76-4932-01 2 227922184 227922184 G A COL4A4 Missense_Mutation p.P839L 0.20 unknown(0) TCGA-76-4932-01 2 90154031 90154031 A T IGKV3D-15 Missense_Mutation p.T40S 0.47 tolerated(0.21) benign(0.24) TCGA-76-4932-01 3 126260762 126260762 G A CHST13 Missense_Mutation p.V123M 0.47 deleterious(0) probably_damaging(0.951) TCGA-76-4932-01 3 184009860 184009860 C T ECE2 Missense_Mutation p.S829L 0.56 tolerated(0.05) possibly_damaging(0.659) TCGA-76-4932-01 3 2787313 2787313 C T CNTN4 Missense_Mutation p.T97M 0.40 tolerated(0.35) benign(0.237) TCGA-76-4932-01 3 63601187 63601187 G A SYNPR 3'UTR 0.43 TCGA-76-4932-01 4 190876274 190876274 C A FRG1 Missense_Mutation p.P134T 0.04 tolerated(0.15) benign(0.193) TCGA-76-4932-01 4 57237647 57237647 G C AASDH Silent p.L277L 0.20 TCGA-76-4932-01 4 619767 619767 G A PDE6B Missense_Mutation p.V118I 0.57 tolerated(0.17) benign(0.005) TCGA-76-4932-01 5 118728680 118728680 G T TNFAIP8 Missense_Mutation p.E67D 0.43 tolerated(0.07) benign(0.028) TCGA-76-4932-01 5 139508353 139508353 G A IGIP 3'UTR 0.39 TCGA-76-4932-01 5 140167119 140167119 G A PCDHA1 Missense_Mutation p.R415H 0.42 deleterious_low_confidence(0.03) benign(0.405) TCGA-76-4932-01 6 138599742 138599742 G A KIAA1244 Silent p.A761A 0.49 TCGA-76-4932-01 6 49976857 49976857 G A DEFB110 Silent p.C61C 0.42 TCGA-76-4932-01 6 89808574 89808574 G A SRSF12 Missense_Mutation p.P170L 0.41 deleterious(0) possibly_damaging(0.908) TCGA-76-4932-01 7 143080252 143080252 G A ZYX Missense_Mutation p.G287E 0.32 deleterious(0.03) possibly_damaging(0.859) TCGA-76-4932-01 7 143095154 143095154 G A EPHA1 Missense_Mutation p.R492W 0.25 tolerated(0.13) benign(0.001) TCGA-76-4932-01 7 150878355 150878355 G A ASB10 Missense_Mutation p.R259C 0.20 tolerated(0.08) benign(0.005) TCGA-76-4932-01 7 45956872 45956872 G A IGFBP3 Silent p.Y196Y 0.32 TCGA-76-4932-01 7 93519456 93519456 C T TFPI2 Silent p.R88R 0.29 TCGA-76-4932-01 7 94293373 94293373 C T PEG10 Missense_Mutation p.R169C 0.27 tolerated(0.1) benign(0.016) TCGA-76-4932-01 7 94293713 94293713 C T PEG10 Missense_Mutation p.T282M 0.43 deleterious(0) probably_damaging(0.964) TCGA-76-4932-01 8 145051798 145051798 C T PARP10 Missense_Mutation p.A978T 0.27 tolerated(0.11) possibly_damaging(0.817) TCGA-76-4932-01 8 145622709 145622709 G A CPSF1 Missense_Mutation p.T793I 0.40 tolerated(0.17) benign(0.002) TCGA-76-4932-01 8 25250313 25250313 C T DOCK5 Missense_Mutation p.T1481M 0.41 deleterious(0.01) possibly_damaging(0.837) TCGA-76-4932-01 9 35808664 35808664 C T NPR2 Silent p.R957R 0.35 TCGA-76-4932-01 X 106221358 106221358 A T MORC4 Missense_Mutation p.H336Q 0.43 deleterious(0) probably_damaging(0.999) TCGA-76-4932-01 X 122756613 122756613 T A THOC2 Missense_Mutation p.N1261Y 0.42 deleterious(0.03) possibly_damaging(0.613) TCGA-76-4932-01 X 14599498 14599498 C T GLRA2 Missense_Mutation p.S155L 0.41 tolerated(0.08) benign(0.064) TCGA-76-4932-01 X 37431325 37431325 G A LANCL3 Missense_Mutation p.G68S 0.36 deleterious(0.01) probably_damaging(1) TCGA-76-4934-01 10 18276538 18276538 C T SLC39A12 Silent p.V409V 0.72 TCGA-76-4934-01 10 29784039 29784039 C T SVIL Missense_Mutation p.V1246I 0.62 tolerated(0.39) benign(0.014) TCGA-76-4934-01 10 89692778 89692778 T C PTEN Missense_Mutation p.Y88H 0.79 deleterious(0) probably_damaging(0.971) TCGA-76-4934-01 11 30974095 30974095 C T DCDC1 Missense_Mutation p.G871E 0.69 tolerated(0.1) possibly_damaging(0.632) TCGA-76-4934-01 11 66797643 66797643 C A SYT12 Missense_Mutation p.L10M 0.05 deleterious_low_confidence(0.02) benign(0.347) TCGA-76-4934-01 12 14993552 14993552 G A ART4 Missense_Mutation p.T227I 0.34 deleterious(0.04) possibly_damaging(0.867) TCGA-76-4934-01 12 416979 416979 G A KDM5A Missense_Mutation p.L1191F 0.16 tolerated(0.16) benign(0.223) TCGA-76-4934-01 12 53011874 53011874 G A KRT73 Silent p.S145S 0.39 TCGA-76-4934-01 12 59274532 59274532 A G LRIG3 Silent p.A544A 0.40 TCGA-76-4934-01 12 6442637 6442637 G T TNFRSF1A Missense_Mutation p.T123N 0.40 deleterious(0) probably_damaging(1) TCGA-76-4934-01 13 101728226 101728226 G A NALCN Missense_Mutation p.H1318Y 0.62 tolerated(0.07) possibly_damaging(0.823) TCGA-76-4934-01 13 20039688 20039688 G A TPTE2 Nonsense_Mutation p.R177* 0.25 TCGA-76-4934-01 13 20235946 20235946 G A MPHOSPH8 Missense_Mutation p.G634R 0.22 deleterious(0) probably_damaging(1) TCGA-76-4934-01 14 20215930 20215930 T G OR4Q3 Missense_Mutation p.L115W 0.76 deleterious(0) probably_damaging(0.97) TCGA-76-4934-01 14 76012841 76012841 C T BATF Missense_Mutation p.R69C 0.71 deleterious(0) probably_damaging(0.999) TCGA-76-4934-01 15 42185458 42185458 G A SPTBN5 Intron 0.38 TCGA-76-4934-01 16 50112858 50112858 G C HEATR3 Missense_Mutation p.D324H 0.48 deleterious(0.01) possibly_damaging(0.778) TCGA-76-4934-01 16 88688690 88688690 C T ZC3H18 Nonsense_Mutation p.R521* 0.55 TCGA-76-4934-01 17 7577120 7577120 C T TP53 Missense_Mutation p.R273H 0.78 tolerated(0.13) possibly_damaging(0.631) TCGA-76-4934-01 18 2610820 2610820 G A NDC80 Missense_Mutation p.R584H 0.42 tolerated(0.35) benign(0.005) TCGA-76-4934-01 19 1482471 1482471 G A PCSK4 Missense_Mutation p.T567M 0.25 tolerated(0.18) benign(0.122) TCGA-76-4934-01 19 33579113 33579113 C - GPATCH1 Frame_Shift_Del p.H50Tfs*56 0.35 TCGA-76-4934-01 19 43523198 43523198 C G PSG11 Missense_Mutation p.E145Q 0.38 deleterious(0.02) benign(0.257) TCGA-76-4934-01 1 104297194 104297194 C T AMY1C Nonsense_Mutation p.R318* 0.15 TCGA-76-4934-01 1 151992775 151992775 G A NBPF18P RNA 0.43 TCGA-76-4934-01 1 78401572 78401572 G T NEXN Missense_Mutation p.R439M 0.15 deleterious(0) probably_damaging(0.993) TCGA-76-4934-01 1 85331314 85331314 T C LPAR3 Missense_Mutation p.T164A 0.22 tolerated(0.28) benign(0.422) TCGA-76-4934-01 20 44750990 44750990 C T CD40 Silent p.C83C 0.24 TCGA-76-4934-01 21 47549388 47549388 G A COL6A2 Intron 0.46 TCGA-76-4934-01 2 121726342 121726342 G A GLI2 Silent p.A232A 0.51 TCGA-76-4934-01 2 207173022 207173022 C A ZDBF2 Missense_Mutation p.P1257H 0.34 deleterious(0) possibly_damaging(0.893) TCGA-76-4934-01 2 219691740 219691740 G A PRKAG3 Missense_Mutation p.A360V 0.27 tolerated(0.13) probably_damaging(1) TCGA-76-4934-01 2 242065780 242065780 C T PASK Silent p.T850T 0.54 TCGA-76-4934-01 2 48809103 48809103 G T STON1-GTF2A1L Missense_Mutation p.C444F 0.52 deleterious(0.01) probably_damaging(0.999) TCGA-76-4934-01 2 56420085 56420085 G C CCDC85A Missense_Mutation p.K250N 0.15 deleterious_low_confidence(0.01) probably_damaging(0.94) TCGA-76-4934-01 3 119462994 119462994 G A MAATS1 Missense_Mutation p.R618H 0.54 deleterious(0) probably_damaging(1) TCGA-76-4934-01 3 150387205 150387205 C T FAM194A Silent p.V459V 0.42 TCGA-76-4934-01 3 183209648 183209648 G A KLHL6 3'UTR 0.58 TCGA-76-4934-01 3 2613143 2613143 G A CNTN4 5'UTR 0.40 TCGA-76-4934-01 3 39188146 39188146 C A CSRNP1 Missense_Mutation p.D10Y 0.38 deleterious(0) probably_damaging(0.999) TCGA-76-4934-01 4 156634553 156634553 C T GUCY1A3 Nonsense_Mutation p.Q464* 0.46 TCGA-76-4934-01 4 164050120 164050120 G A NAF1 Missense_Mutation p.P472S 0.48 deleterious_low_confidence(0.01) probably_damaging(0.996) TCGA-76-4934-01 4 55561742 55561742 A G KIT Silent p.S44S 0.97 TCGA-76-4934-01 4 86956 86956 C G Z95704.2 RNA 0.24 TCGA-76-4934-01 5 118324199 118324199 G T DTWD2 Nonsense_Mutation p.S3* 0.25 TCGA-76-4934-01 5 140202968 140202968 G A PCDHA5 Silent p.A536A 0.36 TCGA-76-4934-01 5 1422074 1422074 G A SLC6A3 Missense_Mutation p.R237W 0.39 deleterious(0) probably_damaging(0.989) TCGA-76-4934-01 5 154393566 154393566 C G KIF4B Missense_Mutation p.F49L 0.32 deleterious(0) probably_damaging(1) TCGA-76-4934-01 5 171510086 171510086 C T STK10 Missense_Mutation p.R563H 0.73 deleterious(0) possibly_damaging(0.463) TCGA-76-4934-01 5 89815175 89815175 G C LYSMD3 Missense_Mutation p.Q128E 0.43 tolerated(1) benign(0.08) TCGA-76-4934-01 6 43472961 43472961 C T TJAP1 Missense_Mutation p.P348S 0.34 deleterious(0) probably_damaging(0.999) TCGA-76-4934-01 6 7370288 7370288 G A CAGE1 Missense_Mutation p.T586M 0.39 tolerated(0.94) benign(0.001) TCGA-76-4934-01 7 121943310 121943310 C T FEZF1 Missense_Mutation p.R286K 0.41 tolerated(0.25) possibly_damaging(0.665) TCGA-76-4934-01 7 142013077 142013077 G T TRBV4-1 Silent p.L14L 0.20 TCGA-76-4934-01 7 144062587 144062587 C A ARHGEF5 Missense_Mutation p.T942N 0.10 tolerated(0.08) benign(0.01) TCGA-76-4934-01 7 64437955 64437955 C T ZNF117 3'UTR 0.23 TCGA-76-4934-01 7 75048122 75048122 C A POM121C Missense_Mutation p.R974L 0.51 deleterious(0) possibly_damaging(0.707) TCGA-76-4934-01 7 94040399 94040399 C T COL1A2 Missense_Mutation p.P428L 0.18 probably_damaging(0.995) TCGA-76-4934-01 8 17726236 17726236 G A FGL1 Silent p.Y200Y 0.25 TCGA-76-4934-01 8 88886046 88886046 T A DCAF4L2 Missense_Mutation p.S52C 0.58 deleterious(0) possibly_damaging(0.839) TCGA-76-4934-01 8 92407447 92407447 G A SLC26A7 3'Flank 0.31 TCGA-76-4934-01 9 136913570 136913570 C T BRD3 Missense_Mutation p.G241S 0.40 tolerated(0.1) probably_damaging(0.986) TCGA-76-4934-01 X 105855563 105855563 G A CXorf57 Missense_Mutation p.D85N 0.24 tolerated(0.16) benign(0.017) TCGA-76-4934-01 X 129354388 129354388 G A ZNF280C Missense_Mutation p.H488Y 0.43 deleterious(0) probably_damaging(1) TCGA-76-4934-01 X 148072954 148072954 C A AFF2 3'UTR 0.48 TCGA-76-4934-01 X 2867360 2867360 G A ARSE Missense_Mutation p.A280V 0.20 tolerated(1) benign(0.001) TCGA-76-4934-01 X 49065814 49065814 G T CACNA1F Silent p.R1632R 0.04 TCGA-76-4934-01 X 67937331 67937331 G A STARD8 Missense_Mutation p.G192D 0.50 tolerated(0.3) benign(0.017) TCGA-76-4935-01 10 89720805 89720808 CTTT - PTEN Frame_Shift_Del p.T319Kfs*24 0.83 TCGA-76-4935-01 10 98743678 98743678 G T C10orf12 Missense_Mutation p.R844M 0.10 deleterious(0) probably_damaging(1) TCGA-76-4935-01 12 121437175 121437175 C T HNF1A Missense_Mutation p.L536F 0.41 deleterious(0.01) probably_damaging(0.999) TCGA-76-4935-01 12 21997717 21997717 T C ABCC9 Missense_Mutation p.I1077V 0.06 tolerated(0.28) benign(0.052) TCGA-76-4935-01 12 4721722 4721722 C T DYRK4 Missense_Mutation p.L387F 0.04 tolerated(0.11) benign(0.078) TCGA-76-4935-01 12 54367099 54367099 G A HOXC11 Missense_Mutation p.R25Q 0.05 deleterious(0.02) probably_damaging(0.961) TCGA-76-4935-01 12 66308782 66308782 C T HMGA2 Intron 0.11 TCGA-76-4935-01 12 80730771 80730771 G A OTOGL Missense_Mutation p.R1607Q 0.40 deleterious(0) probably_damaging(0.999) TCGA-76-4935-01 14 24809111 24809111 G A RIPK3 5'UTR 0.11 TCGA-76-4935-01 14 68274502 68274502 G A ZFYVE26 Missense_Mutation p.P167S 0.04 tolerated(0.13) benign(0.023) TCGA-76-4935-01 15 69328195 69328195 G A NOX5 Silent p.P369P 0.26 TCGA-76-4935-01 16 21726417 21726417 G A OTOA Missense_Mutation p.V478I 0.46 tolerated(0.57) benign(0.008) TCGA-76-4935-01 16 56970643 56970643 G C HERPUD1 Missense_Mutation p.Q115H 0.42 tolerated(0.47) benign(0.022) TCGA-76-4935-01 17 10250061 10250061 C T MYH13 Missense_Mutation p.G400D 0.39 deleterious(0.01) possibly_damaging(0.745) TCGA-76-4935-01 17 4084568 4084568 C T ANKFY1 Missense_Mutation p.A783T 0.31 deleterious(0.02) benign(0.168) TCGA-76-4935-01 17 5037255 5037255 G A USP6 Missense_Mutation p.R153Q 0.37 tolerated_low_confidence(0.22) possibly_damaging(0.553) TCGA-76-4935-01 17 51900577 51900577 G T KIF2B Silent p.V61V 0.07 TCGA-76-4935-01 17 51900579 51900579 A G KIF2B Missense_Mutation p.E62G 0.07 deleterious(0) probably_damaging(0.998) TCGA-76-4935-01 17 72845978 72845978 G A GRIN2C Missense_Mutation p.T529M 0.05 deleterious(0) probably_damaging(0.998) TCGA-76-4935-01 19 12769127 12769127 C T MAN2B1 Missense_Mutation p.A381T 0.11 deleterious(0) probably_damaging(0.971) TCGA-76-4935-01 1 12726232 12726232 A G AADACL4 Missense_Mutation p.Q237R 0.34 deleterious(0.03) benign(0.33) TCGA-76-4935-01 1 149906114 149906114 G A MTMR11 Missense_Mutation p.T218M 0.42 deleterious(0.03) benign(0.032) TCGA-76-4935-01 1 208391207 208391207 G T PLXNA2 Missense_Mutation p.L21I 0.48 tolerated(0.11) benign(0) TCGA-76-4935-01 1 71437301 71437301 A T PTGER3 Intron 0.31 TCGA-76-4935-01 1 75038917 75038917 G C C1orf173 Missense_Mutation p.T826R 0.42 tolerated(0.18) benign(0.075) TCGA-76-4935-01 1 95712430 95712430 G A RWDD3 3'UTR 0.49 TCGA-76-4935-01 20 44453472 44453472 G A TNNC2 Missense_Mutation p.T2M 0.42 deleterious(0) probably_damaging(0.996) TCGA-76-4935-01 21 27840743 27840743 C G CYYR1 3'UTR 0.41 TCGA-76-4935-01 2 158165186 158165186 A G GALNT5 Silent p.R876R 0.42 TCGA-76-4935-01 2 219294359 219294359 C T VIL1 Silent p.V270V 0.09 TCGA-76-4935-01 2 220344732 220344732 C T SPEG Missense_Mutation p.R1738W 0.10 probably_damaging(0.997) TCGA-76-4935-01 2 242681957 242681957 T C D2HGDH Missense_Mutation p.M153T 0.07 deleterious(0) probably_damaging(0.993) TCGA-76-4935-01 2 26647184 26647184 C T DRC1 Silent p.F134F 0.11 TCGA-76-4935-01 2 45801787 45801787 G A SRBD1 Missense_Mutation p.T383M 0.37 deleterious(0) possibly_damaging(0.742) TCGA-76-4935-01 3 37366849 37366849 G A GOLGA4 Missense_Mutation p.V1180I 0.43 benign(0.008) TCGA-76-4935-01 5 147807459 147807459 C A FBXO38 Intron 0.04 TCGA-76-4935-01 5 169535162 169535162 C A FOXI1 Silent p.S228S 0.07 TCGA-76-4935-01 5 45262592 45262592 C T HCN1 Missense_Mutation p.A702T 0.45 deleterious_low_confidence(0.04) benign(0.041) TCGA-76-4935-01 5 73048878 73048878 G A ARHGEF28 Missense_Mutation p.R109H 0.35 tolerated(0.22) possibly_damaging(0.794) TCGA-76-4935-01 6 28293706 28293706 C A ZSCAN31 3'UTR 0.47 TCGA-76-4935-01 6 33286946 33286946 C A DAXX Missense_Mutation p.C664F 0.11 tolerated_low_confidence(0.7) benign(0.214) TCGA-76-4935-01 7 113518832 113518832 G A PPP1R3A Missense_Mutation p.A772V 0.30 tolerated(0.08) benign(0.348) TCGA-76-4935-01 7 144015510 144015510 C T OR2A1 Missense_Mutation p.T98M 0.10 tolerated(0.75) benign(0.002) TCGA-76-4935-01 7 144062206 144062206 C A ARHGEF5 Missense_Mutation p.P815H 0.25 deleterious(0) probably_damaging(0.999) TCGA-76-4935-01 7 150417468 150417468 G A GIMAP1 Missense_Mutation p.A126T 0.16 tolerated(0.52) benign(0.053) TCGA-76-4935-01 7 20782599 20782599 C T ABCB5 Nonsense_Mutation p.R1042* 0.09 TCGA-76-4935-01 8 135600535 135600535 G T ZFAT Missense_Mutation p.F889L 0.19 deleterious(0) probably_damaging(0.986) TCGA-76-4935-01 8 144808629 144808629 C T FAM83H Missense_Mutation p.R1001H 0.68 tolerated(0.07) possibly_damaging(0.755) TCGA-76-4935-01 8 59059573 59059573 G C FAM110B Missense_Mutation p.D262H 0.12 deleterious(0) probably_damaging(1) TCGA-76-4935-01 8 77768255 77768255 C G ZFHX4 Nonsense_Mutation p.S3033* 0.41 TCGA-76-4935-01 9 130940028 130940028 C T CIZ1 Silent p.G545G 0.18 TCGA-76-4935-01 9 71509330 71509330 A G PIP5K1B Missense_Mutation p.I183V 0.45 tolerated(0.16) benign(0.156) TCGA-76-4935-01 9 90501883 90501883 C G SPATA31E1 Silent p.L827L 0.05 TCGA-76-4935-01 X 100075435 100075435 G T CSTF2 Silent p.A10A 0.31 TCGA-76-4935-01 X 107224498 107224498 C G TEX13B Missense_Mutation p.V251L 0.06 tolerated(0.28) benign(0.298) TCGA-76-4935-01 X 111020072 111020072 G A TRPC5 Silent p.V797V 0.13 TCGA-76-4935-01 X 133680688 133680688 C T MIR503HG 5'Flank 0.45 TCGA-76-4935-01 X 148059892 148059892 C T AFF2 Silent p.C1159C 0.44 TCGA-76-4935-01 X 149931076 149931076 C A MTMR1 Silent p.V624V 0.12 TCGA-76-4935-01 X 153008746 153008746 C T ABCD1 Missense_Mutation p.A646V 0.29 tolerated(0.15) benign(0.177) TCGA-76-4935-01 X 16672671 16672671 A G S100G 3'UTR 0.12 TCGA-76-4935-01 X 17818870 17818870 C T RAI2 Missense_Mutation p.E421K 0.40 deleterious(0.02) unknown(0) TCGA-76-4935-01 X 19506966 19506966 C T MAP3K15 Missense_Mutation p.D161N 0.07 tolerated(0.1) benign(0.244) TCGA-76-4935-01 X 21675213 21675213 C G KLHL34 Missense_Mutation p.V232L 0.39 tolerated(0.4) benign(0.009) TCGA-76-4935-01 X 3240193 3240193 T C MXRA5 Missense_Mutation p.E1178G 0.40 tolerated(0.23) benign(0.003) TCGA-76-4935-01 X 44703624 44703624 C T DUSP21 Silent p.Y82Y 0.37 TCGA-76-4935-01 X 65819404 65819404 C T EDA2R Silent p.E293E 0.14 TCGA-76-4935-01 X 91873723 91873723 C A PCDH11X Silent p.V1276V 0.43 TCGA-76-6191-01 10 89624299 89624299 T G PTEN Missense_Mutation p.L25V 0.76 deleterious(0) possibly_damaging(0.786) TCGA-76-6191-01 11 115111056 115111056 T A CADM1 Missense_Mutation p.D70V 0.30 deleterious(0) probably_damaging(0.993) TCGA-76-6191-01 11 125503132 125503132 A T CHEK1 Missense_Mutation p.M167L 0.46 tolerated(0.28) benign(0.002) TCGA-76-6191-01 11 4825512 4825512 C T OR52R1 Silent p.P33P 0.44 TCGA-76-6191-01 11 55563722 55563722 C T OR5D14 Missense_Mutation p.R231C 0.42 tolerated(0.09) benign(0.008) TCGA-76-6191-01 11 60102450 60102450 G A MS4A6E Missense_Mutation p.E28K 0.40 tolerated(0.91) benign(0.002) TCGA-76-6191-01 11 60183031 60183031 C T MS4A14 Missense_Mutation p.A230V 0.40 tolerated(1) benign(0.006) TCGA-76-6191-01 11 60271232 60271232 T C MS4A12 Missense_Mutation p.I177T 0.37 tolerated(0.08) possibly_damaging(0.794) TCGA-76-6191-01 11 70181755 70181755 G A PPFIA1 Silent p.R461R 0.41 TCGA-76-6191-01 12 132491424 132491424 T C EP400 Splice_Site p.X1102_splice 0.43 TCGA-76-6191-01 12 18836249 18836249 C T PLCZ1 Missense_Mutation p.R584H 0.45 tolerated(1) benign(0.004) TCGA-76-6191-01 12 55758924 55758926 TAT AA OR6C75 Frame_Shift_Del p.F10Lfs*6 0.29 TCGA-76-6191-01 12 9268357 9268357 C T A2M Intron 0.39 TCGA-76-6191-01 13 113729315 113729315 G T MCF2L Missense_Mutation p.A374S 0.34 tolerated(0.39) benign(0.002) TCGA-76-6191-01 13 22067477 22067477 T G MICU2 Missense_Mutation p.S406R 0.36 tolerated(0.17) possibly_damaging(0.522) TCGA-76-6191-01 15 33359812 33359812 C T FMN1 Missense_Mutation p.G92R 0.16 tolerated_low_confidence(0.66) unknown(0) TCGA-76-6191-01 15 43544994 43544994 G A TGM5 Silent p.Y275Y 0.59 TCGA-76-6191-01 15 59499582 59499582 G T LDHAL6B Missense_Mutation p.R148L 0.62 deleterious(0.01) possibly_damaging(0.691) TCGA-76-6191-01 16 2511144 2511144 C G C16orf59 Missense_Mutation p.P175R 0.45 tolerated(0.11) possibly_damaging(0.9) TCGA-76-6191-01 16 9858638 9858638 A T GRIN2A Silent p.A921A 0.40 TCGA-76-6191-01 17 17910458 17910458 C T LRRC48 Silent p.R441R 0.60 TCGA-76-6191-01 17 34415991 34415991 C T CCL3 3'UTR 0.50 TCGA-76-6191-01 17 62007651 62007651 G A CD79B Silent p.S72S 0.37 TCGA-76-6191-01 18 64211976 64211978 CTT - CDH19 In_Frame_Del p.E313del 0.43 TCGA-76-6191-01 19 10104318 10104318 G T COL5A3 Missense_Mutation p.L558M 0.41 unknown(0) TCGA-76-6191-01 19 16000481 16000481 C T CYP4F2 Missense_Mutation p.A224T 0.42 tolerated(0.09) benign(0.19) TCGA-76-6191-01 19 362356 362356 C T THEG Silent p.K328K 0.46 TCGA-76-6191-01 19 39001381 39001381 G A RYR1 Missense_Mutation p.G3028S 0.50 benign(0.012) TCGA-76-6191-01 19 40902416 40902416 C T PRX Missense_Mutation p.D615N 0.43 tolerated(0.18) possibly_damaging(0.741) TCGA-76-6191-01 19 7794186 7794186 G T CLEC4G 3'UTR 0.38 TCGA-76-6191-01 1 147230396 147230396 A G GJA5 Silent p.Y317Y 0.39 TCGA-76-6191-01 1 152732251 152732251 G A KPRP Missense_Mutation p.A63T 0.41 tolerated_low_confidence(0.09) benign(0.016) TCGA-76-6191-01 1 171765699 171765699 C A METTL13 Missense_Mutation p.P635T 0.37 tolerated(0.06) benign(0.133) TCGA-76-6191-01 1 186289465 186289465 C T TPR Missense_Mutation p.G2183S 0.23 benign(0.344) TCGA-76-6191-01 1 226172935 226172935 A G SDE2 3'UTR 0.53 TCGA-76-6191-01 20 43926658 43926658 G A MATN4 Silent p.R493R 0.43 TCGA-76-6191-01 20 44693706 44693706 C T NCOA5 Missense_Mutation p.R264H 0.40 tolerated(0.05) benign(0.164) TCGA-76-6191-01 21 47410308 47410308 G A COL6A1 Missense_Mutation p.R325H 0.45 tolerated(0.12) unknown(0) TCGA-76-6191-01 22 42609517 42609517 C A TCF20 Missense_Mutation p.V599F 0.37 possibly_damaging(0.495) TCGA-76-6191-01 2 155711520 155711520 T A KCNJ3 Missense_Mutation p.S401T 0.44 tolerated(0.44) benign(0.002) TCGA-76-6191-01 2 170003375 170003375 C A LRP2 Missense_Mutation p.G4229C 0.42 probably_damaging(1) TCGA-76-6191-01 2 178482747 178482747 C T TTC30A Missense_Mutation p.G228D 0.06 deleterious(0) probably_damaging(0.988) TCGA-76-6191-01 3 130202897 130202897 C T COL6A5 3'UTR 0.62 TCGA-76-6191-01 3 17053527 17053527 A G PLCL2 Missense_Mutation p.R771G 0.07 deleterious(0) possibly_damaging(0.889) TCGA-76-6191-01 3 184910535 184910535 G A EHHADH Nonsense_Mutation p.R551* 0.45 TCGA-76-6191-01 3 42167078 42167078 G A TRAK1 Silent p.E86E 0.44 TCGA-76-6191-01 3 97852415 97852415 C T OR5H1 Silent p.L292L 0.29 TCGA-76-6191-01 3 98189045 98189045 T A OR5K1 Missense_Mutation p.F209I 0.37 deleterious(0.05) probably_damaging(0.999) TCGA-76-6191-01 4 159554592 159554592 C T RXFP1 Missense_Mutation p.P312L 0.34 deleterious(0.03) benign(0.004) TCGA-76-6191-01 4 167663205 167663205 G T SPOCK3 Missense_Mutation p.P316T 0.44 deleterious(0) probably_damaging(1) TCGA-76-6191-01 4 189026428 189026428 A T TRIML2 5'UTR 0.42 TCGA-76-6191-01 4 3319669 3319669 C T RGS12 Missense_Mutation p.A591V 0.43 tolerated(0.37) benign(0.004) TCGA-76-6191-01 4 74367504 74367504 G C AFM Missense_Mutation p.R549S 0.41 deleterious(0.01) probably_damaging(0.978) TCGA-76-6191-01 5 151775094 151775094 C T NMUR2 Missense_Mutation p.R288Q 0.37 deleterious(0) probably_damaging(0.997) TCGA-76-6191-01 5 17353957 17353957 G A CTD-2139B15.2 5'Flank 0.55 TCGA-76-6191-01 6 161007524 161007524 G T LPA Silent p.P1362P 0.30 TCGA-76-6191-01 6 167549965 167549965 G A CCR6 Missense_Mutation p.V83I 0.47 tolerated(0.18) benign(0.055) TCGA-76-6191-01 7 142239627 142239627 C T TRBV9 Missense_Mutation p.A85T 0.37 deleterious(0.03) possibly_damaging(0.613) TCGA-76-6191-01 7 148495685 148495685 C - CUL1 Frame_Shift_Del p.N685Mfs*4 0.22 TCGA-76-6191-01 7 26779515 26779515 G A SKAP2 Missense_Mutation p.R126C 0.35 deleterious(0) probably_damaging(1) TCGA-76-6191-01 7 55233110 55233110 C G EGFR Missense_Mutation p.C620W 0.22 deleterious(0) possibly_damaging(0.881) TCGA-76-6191-01 7 6189342 6189342 G T USP42 Missense_Mutation p.W505C 0.31 deleterious(0) probably_damaging(0.999) TCGA-76-6191-01 7 92932809 92932809 G C CCDC132 Missense_Mutation p.E467Q 0.22 deleterious(0.01) probably_damaging(1) TCGA-76-6191-01 7 98547126 98547126 G A TRRAP Silent p.G1618G 0.22 TCGA-76-6191-01 8 101541822 101541823 TG - ANKRD46 Frame_Shift_Del p.T80Sfs*22 0.25 TCGA-76-6191-01 8 10583718 10583718 G A SOX7 Missense_Mutation p.R285C 0.58 tolerated(0.12) benign(0.006) TCGA-76-6191-01 8 21767417 21767417 C T DOK2 Missense_Mutation p.R215H 0.38 deleterious(0) probably_damaging(1) TCGA-76-6191-01 8 36642023 36642023 T C KCNU1 Missense_Mutation p.F32S 0.49 deleterious(0.01) benign(0.163) TCGA-76-6191-01 8 82626245 82626245 G A ZFAND1 Nonsense_Mutation p.R130* 0.47 TCGA-76-6191-01 9 104335628 104335628 C T GRIN3A Missense_Mutation p.R1059Q 0.38 tolerated(0.31) benign(0.001) TCGA-76-6191-01 9 122000991 122000991 A G BRINP1 Silent p.N209N 0.45 TCGA-76-6192-01 10 15649777 15649777 G A ITGA8 Missense_Mutation p.R555W 0.38 deleterious(0) probably_damaging(1) TCGA-76-6192-01 10 89720650 89720650 G A PTEN Splice_Site p.X268_splice 0.42 TCGA-76-6192-01 11 102398591 102398591 C T MMP7 Missense_Mutation p.V78I 0.23 tolerated(0.23) benign(0.003) TCGA-76-6192-01 11 13441120 13441120 T C BTBD10 Silent p.K157K 0.29 TCGA-76-6192-01 11 4406616 4406616 G A TRIM21 Missense_Mutation p.R443W 0.09 tolerated(0.18) probably_damaging(1) TCGA-76-6192-01 11 5906308 5906308 A T OR52E4 Silent p.T262T 0.22 TCGA-76-6192-01 12 19436297 19436297 C G PLEKHA5 Missense_Mutation p.T466R 0.35 deleterious(0.02) probably_damaging(0.998) TCGA-76-6192-01 12 58158677 58158677 C T CYP27B1 Missense_Mutation p.A275T 0.21 tolerated(0.5) benign(0.006) TCGA-76-6192-01 13 26343355 26343355 C T ATP8A2 Silent p.Y852Y 0.29 TCGA-76-6192-01 14 38281639 38281639 G T TTC6 Splice_Site p.X1563_splice 0.17 TCGA-76-6192-01 14 70234973 70234973 G T SRSF5 Missense_Mutation p.D34Y 0.25 tolerated(0.18) probably_damaging(0.96) TCGA-76-6192-01 15 48053911 48053911 A G SEMA6D Silent p.P167P 0.27 TCGA-76-6192-01 15 64472574 64472574 G A CSNK1G1 Missense_Mutation p.A396V 0.05 tolerated_low_confidence(0.13) benign(0.345) TCGA-76-6192-01 16 31383748 31383748 C T ITGAX Missense_Mutation p.T737M 0.30 deleterious(0.04) possibly_damaging(0.739) TCGA-76-6192-01 16 85112653 85112653 G A KIAA0513 Intron 0.14 TCGA-76-6192-01 17 26919636 26919636 G A SPAG5 Missense_Mutation p.P209L 0.14 tolerated_low_confidence(0.29) benign(0.005) TCGA-76-6192-01 19 15073138 15073138 G A SLC1A6 Missense_Mutation p.T204M 0.21 tolerated(0.07) probably_damaging(0.998) TCGA-76-6192-01 19 52149086 52149086 G A SIGLEC14 Missense_Mutation p.R217C 0.24 deleterious(0.04) possibly_damaging(0.822) TCGA-76-6192-01 19 56552352 56552352 C T NLRP5 Missense_Mutation p.R951W 0.32 tolerated(0.06) possibly_damaging(0.613) TCGA-76-6192-01 19 8661947 8661947 C T ADAMTS10 Missense_Mutation p.V322M 0.21 tolerated(0.08) benign(0.041) TCGA-76-6192-01 1 158815528 158815528 C A MNDA Missense_Mutation p.A241D 0.23 deleterious(0) probably_damaging(0.989) TCGA-76-6192-01 1 197060162 197060162 G A ASPM Nonsense_Mutation p.R3152* 0.37 TCGA-76-6192-01 1 197890610 197890610 C T LHX9 Missense_Mutation p.A185V 0.15 tolerated(0.56) benign(0.005) TCGA-76-6192-01 1 44584644 44584644 C T KLF17 Missense_Mutation p.A22V 0.19 tolerated(0.26) benign(0.007) TCGA-76-6192-01 1 47395834 47395834 G A CYP4A11 Missense_Mutation p.R505C 0.19 tolerated(0.12) benign(0.005) TCGA-76-6192-01 1 79404873 79404873 T A ELTD1 Missense_Mutation p.K132N 0.32 tolerated(0.11) benign(0.014) TCGA-76-6192-01 1 92442915 92442915 G A BRDT Missense_Mutation p.V312I 0.06 tolerated(1) benign(0) TCGA-76-6192-01 20 51870967 51870967 G A TSHZ2 Missense_Mutation p.V324I 0.19 tolerated(0.05) benign(0.006) TCGA-76-6192-01 21 38092132 38092132 C T SIM2 Missense_Mutation p.T120M 0.29 deleterious(0) possibly_damaging(0.742) TCGA-76-6192-01 22 21133554 21133554 G A SERPIND1 Intron 0.23 TCGA-76-6192-01 22 38211153 38211153 G A GCAT Silent p.V225V 0.19 TCGA-76-6192-01 2 11300636 11300636 C T PQLC3 Missense_Mutation p.P63L 0.17 tolerated(1) benign(0) TCGA-76-6192-01 2 137814211 137814211 C T THSD7B Missense_Mutation p.R121C 0.30 deleterious(0.05) benign(0.035) TCGA-76-6192-01 2 167262867 167262867 C A SCN7A Missense_Mutation p.M1424I 0.14 tolerated(0.35) benign(0.071) TCGA-76-6192-01 2 179365815 179365815 A T PLEKHA3 Silent p.V229V 0.29 TCGA-76-6192-01 2 201303921 201303921 A C SPATS2L Silent p.S174S 0.18 TCGA-76-6192-01 2 234602327 234602327 T G UGT1A6 Missense_Mutation p.F226C 0.20 deleterious(0) possibly_damaging(0.799) TCGA-76-6192-01 2 239157720 239157720 C T PER2 Missense_Mutation p.A1201T 0.03 tolerated(0.25) benign(0.034) TCGA-76-6192-01 3 140275468 140275468 G A CLSTN2 Silent p.A596A 0.26 TCGA-76-6192-01 3 141163945 141163945 C T ZBTB38 Silent p.D905D 0.07 TCGA-76-6192-01 3 141499458 141499458 G A GRK7 Silent p.T285T 0.24 TCGA-76-6192-01 3 189038544 189038544 A T TPRG1 Missense_Mutation p.M255L 0.11 deleterious(0.03) benign(0.014) TCGA-76-6192-01 4 109667592 109667592 T C ETNPPL Silent p.A422A 0.22 TCGA-76-6192-01 4 74477540 74477540 G T RASSF6 Silent p.S23S 0.21 TCGA-76-6192-01 4 79343100 79343100 C T FRAS1 Missense_Mutation p.R1542C 0.28 probably_damaging(1) TCGA-76-6192-01 4 860238 860238 T C GAK Missense_Mutation p.N986S 0.30 tolerated(0.3) benign(0.009) TCGA-76-6192-01 5 140208644 140208644 C T PCDHA6 Missense_Mutation p.T323M 0.20 tolerated_low_confidence(0.05) possibly_damaging(0.466) TCGA-76-6192-01 5 140263481 140263481 C T PCDHA13 Missense_Mutation p.P543L 0.20 deleterious_low_confidence(0.01) possibly_damaging(0.85) TCGA-76-6192-01 5 140725753 140725753 G A PCDHGA3 Missense_Mutation p.R718H 0.23 tolerated_low_confidence(0.11) benign(0.079) TCGA-76-6192-01 5 14389446 14389446 A G TRIO Missense_Mutation p.I1333V 0.19 benign(0.063) TCGA-76-6192-01 5 169028402 169028402 G A SPDL1 Silent p.P481P 0.31 TCGA-76-6192-01 5 77477403 77477403 C T AP3B1 Silent p.P290P 0.24 TCGA-76-6192-01 5 98128833 98128833 A G RGMB Silent p.K271K 0.12 TCGA-76-6192-01 6 28297413 28297413 C T ZSCAN31 Silent p.E16E 0.23 TCGA-76-6192-01 6 31856011 31856011 G A EHMT2 Missense_Mutation p.R518C 0.29 deleterious(0) possibly_damaging(0.704) TCGA-76-6192-01 6 35980127 35980127 G A SLC26A8 Nonsense_Mutation p.R71* 0.30 TCGA-76-6192-01 7 100674926 100674926 G A MUC17 Missense_Mutation p.V77M 0.18 benign(0.009) TCGA-76-6192-01 7 150878052 150878052 G A ASB10 Missense_Mutation p.R360C 0.21 deleterious(0) possibly_damaging(0.534) TCGA-76-6192-01 7 151921652 151921652 A C KMT2C Missense_Mutation p.V1009G 0.13 probably_damaging(0.995) TCGA-76-6192-01 7 36478889 36478889 G C ANLN Missense_Mutation p.R987T 0.32 deleterious(0.03) benign(0.029) TCGA-76-6192-01 7 47336762 47336762 G A TNS3 Silent p.D1198D 0.18 TCGA-76-6192-01 7 82764222 82764222 G A PCLO Nonsense_Mutation p.R882* 0.22 TCGA-76-6192-01 9 139311437 139311437 G A PMPCA Missense_Mutation p.R223H 0.19 deleterious(0) probably_damaging(0.987) TCGA-76-6192-01 9 14307176 14307176 T C NFIB Missense_Mutation p.D125G 0.36 deleterious(0) probably_damaging(0.995) TCGA-76-6192-01 9 75445373 75445373 C T TMC1 Silent p.A712A 0.14 TCGA-76-6192-01 X 114541268 114541268 G A LUZP4 Missense_Mutation p.V281M 0.61 tolerated(0.41) benign(0.003) TCGA-76-6193-01 10 118689505 118689505 T A KIAA1598 Missense_Mutation p.E289D 0.23 tolerated(0.36) benign(0.005) TCGA-76-6193-01 10 15590502 15590502 G A ITGA8 Silent p.S944S 0.27 TCGA-76-6193-01 10 95791394 95791394 G A PLCE1 Missense_Mutation p.M197I 0.27 tolerated_low_confidence(0.53) benign(0) TCGA-76-6193-01 11 55606593 55606593 T A OR5D16 Nonsense_Mutation p.Y122* 0.18 TCGA-76-6193-01 12 117723943 117723943 C T NOS1 Missense_Mutation p.R419H 0.18 deleterious(0) probably_damaging(0.968) TCGA-76-6193-01 12 85466877 85466877 G T LRRIQ1 Splice_Site p.X963_splice 0.18 TCGA-76-6193-01 12 89865405 89865405 A C POC1B Missense_Mutation p.L221R 0.30 deleterious(0) probably_damaging(1) TCGA-76-6193-01 13 49039379 49039379 C T RB1 Silent p.S788S 0.26 TCGA-76-6193-01 13 73321201 73321201 A G BORA Silent p.S478S 0.30 TCGA-76-6193-01 15 25346795 25346795 C T SNORD116-27 RNA 0.14 TCGA-76-6193-01 15 55838924 55838927 TGAC - PYGO1 Frame_Shift_Del p.S185Kfs*31 0.25 TCGA-76-6193-01 16 30128054 30128054 G A MAPK3 Missense_Mutation p.R359W 0.20 deleterious(0.01) possibly_damaging(0.477) TCGA-76-6193-01 16 56913524 56913524 C T SLC12A3 Missense_Mutation p.A469V 0.13 deleterious(0) possibly_damaging(0.858) TCGA-76-6193-01 17 21731124 21731124 C A UBBP4 Silent p.T142T 0.22 TCGA-76-6193-01 17 65924656 65924656 A G BPTF Silent p.Q1979Q 0.27 TCGA-76-6193-01 17 7577551 7577551 C T TP53 Missense_Mutation p.G244S 0.24 deleterious(0) probably_damaging(1) TCGA-76-6193-01 17 7578464 7578464 G A TP53 Missense_Mutation p.R156C 0.22 tolerated(0.19) benign(0.402) TCGA-76-6193-01 17 7578466 7578466 G T TP53 Missense_Mutation p.T155N 0.23 deleterious(0.01) possibly_damaging(0.731) TCGA-76-6193-01 17 7942479 7942479 C T ALOX15B Silent p.A2A 0.14 TCGA-76-6193-01 19 15164396 15164396 G T CASP14 Missense_Mutation p.R44L 0.21 deleterious(0.02) benign(0.087) TCGA-76-6193-01 19 49651354 49651354 C T PPFIA3 Silent p.G950G 0.24 TCGA-76-6193-01 19 5739352 5739352 G C CATSPERD Missense_Mutation p.V159L 0.23 tolerated(0.3) possibly_damaging(0.662) TCGA-76-6193-01 19 9049260 9049260 G A MUC16 Missense_Mutation p.R10791W 0.16 benign(0.066) TCGA-76-6193-01 1 155254428 155254428 C G HCN3 Silent p.P323P 0.25 TCGA-76-6193-01 1 158300836 158300836 G A CD1B Silent p.T26T 0.24 TCGA-76-6193-01 1 159827989 159827989 G C VSIG8 Nonsense_Mutation p.Y107* 0.09 TCGA-76-6193-01 1 159897214 159897214 C T IGSF9 Missense_Mutation p.R1154H 0.14 deleterious_low_confidence(0) probably_damaging(0.998) TCGA-76-6193-01 1 160920979 160920979 C T ITLN2 Missense_Mutation p.E99K 0.12 deleterious(0) probably_damaging(1) TCGA-76-6193-01 1 183207550 183207550 C T LAMC2 Missense_Mutation p.L955F 0.24 deleterious(0) probably_damaging(0.999) TCGA-76-6193-01 1 43805098 43805098 C T MPL Missense_Mutation p.T183M 0.15 deleterious(0.01) possibly_damaging(0.561) TCGA-76-6193-01 1 77094323 77094323 A T ST6GALNAC3 Missense_Mutation p.K250N 0.16 possibly_damaging(0.799) TCGA-76-6193-01 1 8395553 8395553 C T SLC45A1 Silent p.S500S 0.22 TCGA-76-6193-01 20 1961151 1961151 C T PDYN Missense_Mutation p.G195R 0.25 tolerated(0.08) benign(0.186) TCGA-76-6193-01 20 20493649 20493649 G C RALGAPA2 Missense_Mutation p.S1455C 0.24 deleterious(0.01) benign(0.195) TCGA-76-6193-01 20 60911477 60911477 C T LAMA5 Missense_Mutation p.A748T 0.14 probably_damaging(0.926) TCGA-76-6193-01 22 39448100 39448100 C A APOBEC3F Missense_Mutation p.H249N 0.20 deleterious(0) probably_damaging(0.998) TCGA-76-6193-01 2 219301877 219301877 G A VIL1 Missense_Mutation p.E668K 0.18 tolerated(0.15) benign(0.037) TCGA-76-6193-01 2 74140711 74140711 G A ACTG2 Missense_Mutation p.R184H 0.27 deleterious_low_confidence(0) probably_damaging(0.938) TCGA-76-6193-01 3 121641692 121641692 C T SLC15A2 Missense_Mutation p.A284V 0.18 deleterious(0.01) probably_damaging(0.982) TCGA-76-6193-01 3 121712145 121712145 T G ILDR1 Missense_Mutation p.D484A 0.16 tolerated(0.08) benign(0.014) TCGA-76-6193-01 3 178938803 178938803 A - PIK3CA Frame_Shift_Del p.Q682Rfs*18 0.18 TCGA-76-6193-01 3 42299565 42299565 G A CCK 3'UTR 0.20 TCGA-76-6193-01 3 45127459 45127459 C T CDCP1 Missense_Mutation p.D728N 0.04 tolerated(0.26) probably_damaging(0.946) TCGA-76-6193-01 4 125591834 125591834 A G ANKRD50 Silent p.L866L 0.17 TCGA-76-6193-01 4 40127847 40127847 C T N4BP2 Missense_Mutation p.S1475F 0.24 deleterious(0.01) benign(0.143) TCGA-76-6193-01 4 55946068 55946068 T C KDR 3'UTR 0.14 TCGA-76-6193-01 4 80246554 80246554 G A NAA11 Nonsense_Mutation p.R160* 0.16 TCGA-76-6193-01 5 115177234 115177234 G A ATG12 Nonsense_Mutation p.Q6* 0.15 TCGA-76-6193-01 6 116987896 116987896 G T ZUFSP Missense_Mutation p.P154T 0.22 tolerated(0.06) probably_damaging(0.992) TCGA-76-6193-01 6 129573419 129573419 T C LAMA2 Missense_Mutation p.F692S 0.12 tolerated(0.6) benign(0.04) TCGA-76-6193-01 6 30104737 30104737 G T TRIM40 5'Flank 0.30 TCGA-76-6193-01 6 35911661 35911661 A G SLC26A8 3'UTR 0.19 TCGA-76-6193-01 7 131982916 131982916 G T PLXNA4 Silent p.G479G 0.20 TCGA-76-6193-01 7 99303005 99303005 G A CYP3A7 3'UTR 0.30 TCGA-76-6193-01 8 1574988 1574988 C T DLGAP2 Missense_Mutation p.R429C 0.18 deleterious(0.01) probably_damaging(0.953) TCGA-76-6193-01 9 13162794 13162794 T C MPDZ Silent p.K1085K 0.28 TCGA-76-6193-01 X 125685588 125685588 C T DCAF12L1 Missense_Mutation p.R335H 0.55 deleterious(0) probably_damaging(0.999) TCGA-76-6193-01 X 155169439 155169439 C G VAMP7 Missense_Mutation p.H170D 0.18 deleterious(0.01) benign(0.001) TCGA-76-6280-01 10 18828173 18828173 T C CACNB2 Silent p.D501D 0.57 TCGA-76-6280-01 10 90707027 90707027 G A ACTA2 Silent p.D82D 0.67 TCGA-76-6280-01 10 92616992 92616992 C T HTR7 Missense_Mutation p.G146D 0.08 deleterious(0) probably_damaging(1) TCGA-76-6280-01 10 99141215 99141215 G A RRP12 Missense_Mutation p.P449L 0.24 deleterious(0) benign(0.012) TCGA-76-6280-01 11 20065785 20065785 G A NAV2 Missense_Mutation p.A1079T 0.54 tolerated(0.64) benign(0.001) TCGA-76-6280-01 11 5809262 5809262 A G OR52N1 Missense_Mutation p.F262S 0.73 deleterious(0.01) possibly_damaging(0.777) TCGA-76-6280-01 11 64882420 64882420 C T TM7SF2 Silent p.D253D 0.29 TCGA-76-6280-01 11 74168386 74168386 G A KCNE3 Missense_Mutation p.L75F 0.51 deleterious(0) probably_damaging(0.999) TCGA-76-6280-01 12 123339938 123339938 G A HIP1R Missense_Mutation p.A327T 0.75 tolerated(0.29) benign(0.003) TCGA-76-6280-01 13 24233260 24233260 G A TNFRSF19 Missense_Mutation p.V173I 0.49 deleterious(0.03) benign(0.036) TCGA-76-6280-01 13 40268775 40268775 G T COG6 Missense_Mutation p.R360L 0.45 deleterious(0) probably_damaging(1) TCGA-76-6280-01 14 20404282 20404282 G A OR4K1 Missense_Mutation p.V153I 0.19 tolerated(0.57) benign(0.002) TCGA-76-6280-01 14 38723702 38723702 G A CLEC14A 3'UTR 0.37 TCGA-76-6280-01 14 51239180 51239180 C T NIN Missense_Mutation p.D274N 0.45 deleterious(0) probably_damaging(0.999) TCGA-76-6280-01 14 62567295 62567295 G A SYT16 Missense_Mutation p.R603H 0.34 deleterious(0) probably_damaging(0.998) TCGA-76-6280-01 14 69520671 69520671 C T DCAF5 Missense_Mutation p.R911K 0.40 tolerated_low_confidence(0.52) benign(0.001) TCGA-76-6280-01 14 70712661 70712661 G C ADAM21P1 RNA 0.31 TCGA-76-6280-01 15 42193062 42193062 G A EHD4 Silent p.N469N 0.40 TCGA-76-6280-01 15 75045612 75045612 G A CYP1A2 Splice_Site p.X418_splice 0.47 TCGA-76-6280-01 15 91801746 91801746 C A SV2B Missense_Mutation p.L294M 0.37 deleterious(0) probably_damaging(0.995) TCGA-76-6280-01 15 91801750 91801750 A G SV2B Missense_Mutation p.K295R 0.37 tolerated(0.23) benign(0.005) TCGA-76-6280-01 16 30783282 30783282 C A RNF40 Silent p.L905L 0.41 TCGA-76-6280-01 16 58079116 58079116 C T MMP15 Silent p.G592G 0.42 TCGA-76-6280-01 16 84449185 84449185 C A ATP2C2 Silent p.I204I 0.44 TCGA-76-6280-01 17 16323552 16323552 G A TRPV2 Silent p.S108S 0.30 TCGA-76-6280-01 17 20319973 20319973 T C SRP68P3 RNA 0.37 TCGA-76-6280-01 17 21201792 21201792 G A MAP2K3 Splice_Site p.X39_splice 0.17 TCGA-76-6280-01 17 32953325 32953325 C A TMEM132E Missense_Mutation p.Q83K 0.40 tolerated(1) probably_damaging(0.977) TCGA-76-6280-01 17 44067273 44067273 G A MAPT Silent p.L404L 0.33 TCGA-76-6280-01 17 51901778 51901778 C T KIF2B Missense_Mutation p.R462W 0.23 deleterious(0.02) probably_damaging(1) TCGA-76-6280-01 17 74465804 74465804 G A AANAT Missense_Mutation p.V171M 0.43 deleterious(0) probably_damaging(0.999) TCGA-76-6280-01 17 79991354 79991354 C T RAC3 Silent p.P109P 0.33 TCGA-76-6280-01 18 14543271 14543271 A T POTEC 5'Flank 0.33 TCGA-76-6280-01 18 77893797 77893797 C G ADNP2 Nonsense_Mutation p.Y167* 0.41 TCGA-76-6280-01 19 12059987 12059988 CT - ZNF700 Frame_Shift_Del p.T385Wfs*6 0.18 TCGA-76-6280-01 19 17384818 17384818 C T BABAM1 Silent p.N150N 0.28 TCGA-76-6280-01 19 19656132 19656132 C G CILP2 Silent p.L926L 0.44 TCGA-76-6280-01 19 35837131 35837131 G A CD22 Missense_Mutation p.R802H 0.22 tolerated(0.13) benign(0.008) TCGA-76-6280-01 19 3731941 3731941 G A TJP3 Missense_Mutation p.V217I 0.19 deleterious(0.04) benign(0.126) TCGA-76-6280-01 19 41209757 41209757 C G ADCK4 Missense_Mutation p.V194L 0.22 deleterious(0.04) benign(0.012) TCGA-76-6280-01 19 54800078 54800078 G A LILRA3 Nonsense_Mutation p.Q430* 0.24 TCGA-76-6280-01 19 55084897 55084897 G A LILRA2 5'UTR 0.54 TCGA-76-6280-01 1 208269395 208269395 T G PLXNA2 Missense_Mutation p.Y654S 0.35 deleterious(0.02) benign(0.007) TCGA-76-6280-01 1 2493069 2493069 C T TNFRSF14 Intron 0.54 TCGA-76-6280-01 1 47282802 47282802 C T CYP4B1 Missense_Mutation p.R386C 0.42 deleterious(0.02) benign(0.086) TCGA-76-6280-01 20 50139989 50139989 G A NFATC2 Missense_Mutation p.P264L 0.28 tolerated(0.72) benign(0) TCGA-76-6280-01 20 60963374 60963374 G C RPS21 Missense_Mutation p.D66H 0.27 deleterious(0.03) benign(0.133) TCGA-76-6280-01 2 127453783 127453783 G A GYPC 3'UTR 0.47 TCGA-76-6280-01 2 153514467 153514467 T C PRPF40A Missense_Mutation p.D879G 0.40 deleterious(0.01) unknown(0) TCGA-76-6280-01 2 202074219 202074219 G A CASP10 Missense_Mutation p.R450Q 0.38 deleterious(0) probably_damaging(0.986) TCGA-76-6280-01 3 129297231 129297231 C T PLXND1 Missense_Mutation p.V763M 0.41 tolerated(0.28) benign(0.003) TCGA-76-6280-01 3 32859711 32859711 G A TRIM71 Missense_Mutation p.G47R 0.43 deleterious_low_confidence(0.01) unknown(0) TCGA-76-6280-01 3 58870322 58870322 G A C3orf67 Missense_Mutation p.R97C 0.33 tolerated(0.07) benign(0.169) TCGA-76-6280-01 3 77629222 77629222 C A ROBO2 Missense_Mutation p.T834N 0.37 tolerated(0.12) possibly_damaging(0.728) TCGA-76-6280-01 3 98073062 98073062 G A OR5K4 Missense_Mutation p.R122H 0.60 deleterious(0.01) benign(0.41) TCGA-76-6280-01 4 115891587 115891587 A G NDST4 Missense_Mutation p.L407P 0.38 tolerated(0.26) benign(0.383) TCGA-76-6280-01 5 161112918 161112918 G T GABRA6 5'UTR 0.71 TCGA-76-6280-01 5 17354504 17354504 C T CTD-2139B15.2 RNA 0.40 TCGA-76-6280-01 5 41058293 41058293 C T MROH2B Missense_Mutation p.V210I 0.26 tolerated(0.45) benign(0.016) TCGA-76-6280-01 5 67589634 67589635 - ATATGAAGA PIK3R1 In_Frame_Ins p.E468_Y470dup 0.25 TCGA-76-6280-01 6 117589651 117589651 C T VGLL2 Nonsense_Mutation p.R130* 0.58 TCGA-76-6280-01 6 154414521 154414521 G A OPRM1 Intron 0.37 TCGA-76-6280-01 6 160506085 160506085 G A IGF2R Missense_Mutation p.A2043T 0.30 deleterious(0.04) possibly_damaging(0.803) TCGA-76-6280-01 6 51491840 51491840 G A PKHD1 Nonsense_Mutation p.R3914* 0.47 TCGA-76-6280-01 6 51918008 51918008 C T PKHD1 Missense_Mutation p.R669H 0.24 tolerated(1) benign(0.001) TCGA-76-6280-01 6 51941107 51941107 C T PKHD1 Missense_Mutation p.V139I 0.35 tolerated(0.64) benign(0.011) TCGA-76-6280-01 7 126173900 126173900 C T GRM8 Silent p.P512P 0.26 TCGA-76-6280-01 7 50097612 50097612 G A ZPBP Missense_Mutation p.R154C 0.19 deleterious(0.04) possibly_damaging(0.809) TCGA-76-6280-01 7 54610396 54610396 A T VSTM2A 5'UTR 0.33 TCGA-76-6280-01 7 77648624 77648624 C T MAGI2 3'UTR 0.29 TCGA-76-6280-01 9 131381157 131381157 C T SPTAN1 Missense_Mutation p.R1870W 0.37 deleterious(0) probably_damaging(0.916) TCGA-76-6280-01 9 140777224 140777224 T C CACNA1B Missense_Mutation p.I140T 0.20 deleterious(0) benign(0.152) TCGA-76-6282-01 11 112014285 112014285 G A IL18 3'UTR 0.50 TCGA-76-6282-01 11 118255613 118255613 A T UBE4A Missense_Mutation p.N796Y 0.21 deleterious(0) probably_damaging(1) TCGA-76-6282-01 11 22296134 22296134 C T ANO5 Missense_Mutation p.T752M 0.19 deleterious(0) probably_damaging(0.991) TCGA-76-6282-01 11 4389252 4389252 C T OR52B4 Missense_Mutation p.G92R 0.17 tolerated(0.54) benign(0.033) TCGA-76-6282-01 11 56085826 56085826 C T OR8K3 Missense_Mutation p.T15M 0.22 tolerated_low_confidence(1) benign(0.004) TCGA-76-6282-01 11 60264794 60264794 G C MS4A12 Translation_Start_Site p.M1? 0.28 tolerated(0.09) benign(0.023) TCGA-76-6282-01 11 93911644 93911644 A T PANX1 Missense_Mutation p.E144V 0.07 deleterious(0.05) probably_damaging(0.951) TCGA-76-6282-01 12 26868282 26868282 G A ITPR2 Missense_Mutation p.R269C 0.34 deleterious(0) probably_damaging(1) TCGA-76-6282-01 13 29600584 29600584 G A MTUS2 Silent p.T593T 0.26 TCGA-76-6282-01 14 57269020 57269020 C A OTX2 Missense_Mutation p.Q109H 0.34 deleterious(0.04) benign(0.152) TCGA-76-6282-01 15 41193044 41193044 G A VPS18 Silent p.P676P 0.24 TCGA-76-6282-01 15 50475097 50475097 C T SLC27A2 Missense_Mutation p.S158L 0.38 deleterious(0.02) benign(0.329) TCGA-76-6282-01 16 2812977 2812977 C T SRRM2 Silent p.R816R 0.28 TCGA-76-6282-01 16 2813966 2813966 C G SRRM2 Missense_Mutation p.P1146R 0.33 unknown(0) TCGA-76-6282-01 16 3165522 3165522 C A ZNF205 Missense_Mutation p.P75H 0.24 deleterious(0) possibly_damaging(0.838) TCGA-76-6282-01 16 830269 830269 G A MSLNL Silent p.S244S 0.18 TCGA-76-6282-01 16 9857538 9857538 C T GRIN2A Missense_Mutation p.R1288H 0.21 deleterious(0) probably_damaging(1) TCGA-76-6282-01 17 10233822 10233822 G T MYH13 Missense_Mutation p.L773I 0.19 tolerated(0.11) probably_damaging(0.989) TCGA-76-6282-01 17 32583309 32583309 G A CCL2 Missense_Mutation p.A49T 0.36 tolerated(0.17) benign(0.009) TCGA-76-6282-01 17 39506758 39506758 T G KRT33A Missense_Mutation p.I88L 0.22 tolerated(0.06) possibly_damaging(0.856) TCGA-76-6282-01 17 72923832 72923832 C - OTOP2 Frame_Shift_Del p.Q195Nfs*120 0.26 TCGA-76-6282-01 18 28723628 28723628 C T DSC1 Missense_Mutation p.E356K 0.37 tolerated(0.15) benign(0.008) TCGA-76-6282-01 19 31039659 31039659 G T ZNF536 Missense_Mutation p.A1045S 0.21 tolerated(0.66) benign(0.002) TCGA-76-6282-01 19 35828889 35828889 C T CD22 Missense_Mutation p.P317L 0.19 tolerated(0.35) benign(0.006) TCGA-76-6282-01 19 41096902 41096902 A G SHKBP1 Missense_Mutation p.N638S 0.29 tolerated_low_confidence(0.58) benign(0) TCGA-76-6282-01 19 6535006 6535006 G A TNFSF9 Missense_Mutation p.A232T 0.38 deleterious(0.04) benign(0.405) TCGA-76-6282-01 19 9049297 9049297 C T MUC16 Silent p.S10778S 0.29 TCGA-76-6282-01 1 12785683 12785683 T C AADACL3 Missense_Mutation p.V258A 0.31 tolerated(0.22) benign(0.002) TCGA-76-6282-01 1 170964598 170964598 C T MROH9 Silent p.P421P 0.30 TCGA-76-6282-01 20 10286817 10286817 G A SNAP25 Missense_Mutation p.R198H 0.22 deleterious(0.01) benign(0.025) TCGA-76-6282-01 20 2795824 2795824 T A C20orf141 5'UTR 0.22 TCGA-76-6282-01 20 39794468 39794468 T C PLCG1 Splice_Site p.X600_splice 0.06 TCGA-76-6282-01 21 10933879 10933879 C T TPTE Missense_Mutation p.V334I 0.12 tolerated(1) benign(0.02) TCGA-76-6282-01 21 45107849 45107849 G A RRP1B Missense_Mutation p.V532I 0.26 tolerated(0.24) benign(0.018) TCGA-76-6282-01 22 24034585 24034585 G A RGL4 Silent p.P81P 0.33 TCGA-76-6282-01 22 26423542 26423542 G A MYO18B Silent p.A2534A 0.18 TCGA-76-6282-01 2 103335367 103335367 G A MFSD9 Missense_Mutation p.R313C 0.23 deleterious(0) possibly_damaging(0.862) TCGA-76-6282-01 2 108626710 108626710 G - SLC5A7 Frame_Shift_Del p.V380Lfs*19 0.19 TCGA-76-6282-01 2 220397720 220397720 C A ASIC4 Intron 0.32 TCGA-76-6282-01 2 236659063 236659063 C T AGAP1 Silent p.L202L 0.30 TCGA-76-6282-01 3 112997000 112997000 G A BOC Missense_Mutation p.R533H 0.24 tolerated(0.13) benign(0.013) TCGA-76-6282-01 3 14862054 14862054 T C FGD5 Silent p.Y492Y 0.41 TCGA-76-6282-01 3 19974766 19974766 T A EFHB Missense_Mutation p.I249L 0.26 deleterious(0.02) benign(0.119) TCGA-76-6282-01 4 55956221 55956221 G A KDR Nonsense_Mutation p.R1032* 0.28 TCGA-76-6282-01 4 71275177 71275177 G T PROL1 Missense_Mutation p.W44C 0.24 deleterious_low_confidence(0) possibly_damaging(0.878) TCGA-76-6282-01 4 88239495 88239495 G A HSD17B13 Missense_Mutation p.R102C 0.25 deleterious(0.01) possibly_damaging(0.791) TCGA-76-6282-01 5 70307168 70307168 C A NAIP Missense_Mutation p.G201V 0.14 deleterious(0.01) possibly_damaging(0.868) TCGA-76-6282-01 5 71616252 71616252 C G PTCD2 Missense_Mutation p.R15G 0.26 tolerated(0.2) benign(0.002) TCGA-76-6282-01 6 16130808 16130808 C G MYLIP Missense_Mutation p.I36M 0.28 deleterious(0) probably_damaging(0.989) TCGA-76-6282-01 6 16130886 16130886 C T MYLIP Silent p.I62I 0.30 TCGA-76-6282-01 6 32012858 32012858 T C TNXB Missense_Mutation p.T47A 0.17 tolerated(0.05) probably_damaging(0.997) TCGA-76-6282-01 6 33768891 33768891 G A MLN Missense_Mutation p.A17V 0.29 tolerated(0.17) benign(0.02) TCGA-76-6282-01 6 35838178 35838178 C G SRPK1 Missense_Mutation p.E291Q 0.15 tolerated(0.2) benign(0.016) TCGA-76-6282-01 7 143771890 143771890 T C OR2A25 Missense_Mutation p.I193T 0.18 tolerated(0.08) benign(0.033) TCGA-76-6282-01 7 48026843 48026843 A G SUN3 3'UTR 0.28 TCGA-76-6282-01 7 55231506 55231506 G C EGFR Missense_Mutation p.C571S 0.74 deleterious(0) probably_damaging(0.999) TCGA-76-6282-01 8 105001597 105001597 C T RIMS2 Nonsense_Mutation p.R998* 0.22 TCGA-76-6282-01 8 120101985 120101985 C T COLEC10 Missense_Mutation p.P72L 0.19 tolerated(0.66) benign(0.006) TCGA-76-6282-01 8 42163910 42163910 G A IKBKB Missense_Mutation p.G176D 0.06 deleterious(0.03) possibly_damaging(0.745) TCGA-76-6282-01 8 88886131 88886131 G C DCAF4L2 Silent p.L23L 0.06 TCGA-76-6282-01 9 26886130 26886130 A T CAAP1 Silent p.S187S 0.14 TCGA-76-6283-01 10 46999114 46999114 T G GPRIN2 Silent p.S78S 0.31 TCGA-76-6283-01 10 89624265 89624267 AAG - PTEN In_Frame_Del p.R15del 0.85 TCGA-76-6283-01 11 68549243 68549243 C T CPT1A Missense_Mutation p.D450N 0.45 tolerated(0.28) benign(0.048) TCGA-76-6283-01 11 92539549 92539549 C T FAT3 Missense_Mutation p.P3039S 0.16 possibly_damaging(0.531) TCGA-76-6283-01 12 109194640 109194640 T C SSH1 Missense_Mutation p.Y355C 0.41 deleterious(0) probably_damaging(1) TCGA-76-6283-01 12 118509166 118509166 T G VSIG10 Missense_Mutation p.K443T 0.46 deleterious(0.05) possibly_damaging(0.821) TCGA-76-6283-01 12 48465464 48465464 C T SENP1 Silent p.Q327Q 0.35 TCGA-76-6283-01 12 56336026 56336026 C T DGKA Nonsense_Mutation p.R469* 0.37 TCGA-76-6283-01 12 7559424 7559424 A G CD163L1 Missense_Mutation p.L264P 0.82 deleterious(0) possibly_damaging(0.795) TCGA-76-6283-01 12 8759510 8759510 C T AICDA Missense_Mutation p.R36H 0.86 tolerated(0.59) probably_damaging(0.984) TCGA-76-6283-01 13 48941638 48941641 TCTT - RB1 Frame_Shift_Del p.S318Nfs*13 0.85 TCGA-76-6283-01 13 73372127 73372127 T A PIBF1 Nonsense_Mutation p.L212* 0.07 TCGA-76-6283-01 14 24686302 24686302 G A NEDD8 3'UTR 0.32 TCGA-76-6283-01 14 39722420 39722420 G T MIA2 Missense_Mutation p.L644F 0.40 tolerated_low_confidence(0.07) benign(0.011) TCGA-76-6283-01 14 47120981 47120981 G A RPL10L 5'UTR 0.61 TCGA-76-6283-01 14 76107379 76107379 C T FLVCR2 Silent p.S439S 0.43 TCGA-76-6283-01 15 25200153 25200153 G A SNRPN Intron 0.12 TCGA-76-6283-01 15 43661801 43661801 C G ZSCAN29 Missense_Mutation p.R104T 0.37 tolerated(0.45) benign(0.002) TCGA-76-6283-01 15 53081863 53081863 C T ONECUT1 Silent p.R73R 0.50 TCGA-76-6283-01 15 57565229 57565244 AGTACTAATGAAGATG - TCF12 Frame_Shift_Del p.S583Rfs*3 0.36 TCGA-76-6283-01 15 75129760 75129760 C A ULK3 Missense_Mutation p.W451L 0.12 tolerated(0.63) benign(0.001) TCGA-76-6283-01 15 85326217 85326217 C A ZNF592 Missense_Mutation p.P104H 0.20 deleterious(0) possibly_damaging(0.83) TCGA-76-6283-01 15 85478601 85478601 C T SLC28A1 Missense_Mutation p.A478V 0.38 tolerated(0.06) benign(0.015) TCGA-76-6283-01 15 91184403 91184403 C T CRTC3 Silent p.C541C 0.42 TCGA-76-6283-01 16 2256621 2256621 C T MLST8 Missense_Mutation p.T102M 0.38 deleterious(0) probably_damaging(0.984) TCGA-76-6283-01 16 2506722 2506722 C T CCNF Missense_Mutation p.R688C 0.43 tolerated_low_confidence(0.2) benign(0) TCGA-76-6283-01 16 58752174 58752174 G A GOT2 Missense_Mutation p.H210Y 0.08 deleterious(0) probably_damaging(1) TCGA-76-6283-01 16 61760930 61760930 G A CDH8 Intron 0.38 TCGA-76-6283-01 16 67696250 67696250 G T PARD6A Missense_Mutation p.K247N 0.09 deleterious(0) probably_damaging(0.994) TCGA-76-6283-01 16 70508224 70508224 G T FUK Missense_Mutation p.R657M 0.11 deleterious(0) probably_damaging(0.996) TCGA-76-6283-01 16 711897 711897 C T WDR90 Nonsense_Mutation p.R1291* 0.38 TCGA-76-6283-01 16 76486640 76486640 G A CNTNAP4 Missense_Mutation p.G363E 0.49 tolerated(0.06) possibly_damaging(0.651) TCGA-76-6283-01 16 88688687 88688687 C T ZC3H18 Missense_Mutation p.R520C 0.37 tolerated_low_confidence(0.06) unknown(0) TCGA-76-6283-01 17 60072508 60072512 CTTAC - MED13 Splice_Site p.X727_splice 0.97 TCGA-76-6283-01 17 6376097 6376097 C T PITPNM3 Missense_Mutation p.A437T 0.88 tolerated(0.37) benign(0.234) TCGA-76-6283-01 17 7578457 7578457 C T TP53 Missense_Mutation p.R158H 0.86 tolerated(0.1) benign(0.438) TCGA-76-6283-01 17 79503762 79503762 C T FSCN2 Missense_Mutation p.S431F 0.90 deleterious(0) probably_damaging(0.987) TCGA-76-6283-01 18 21441699 21441699 G A LAMA3 Silent p.A1504A 0.27 TCGA-76-6283-01 19 18174730 18174730 G A IL12RB1 Missense_Mutation p.A525V 0.14 tolerated(0.07) benign(0.297) TCGA-76-6283-01 19 35850246 35850246 G A FFAR3 Missense_Mutation p.V152I 0.26 tolerated(1) benign(0.006) TCGA-76-6283-01 19 46627409 46627409 A T IGFL3 Silent p.A28A 0.05 TCGA-76-6283-01 19 4704202 4704202 G A DPP9 Missense_Mutation p.L181F 0.45 deleterious(0) probably_damaging(0.978) TCGA-76-6283-01 19 47761655 47761655 G A CCDC9 5'UTR 0.08 TCGA-76-6283-01 19 49090651 49090651 C T SULT2B1 Missense_Mutation p.P127L 0.23 deleterious(0) probably_damaging(1) TCGA-76-6283-01 19 51509764 51509764 G A KLK9 Missense_Mutation p.P139L 0.33 deleterious(0.04) possibly_damaging(0.549) TCGA-76-6283-01 19 51957534 51957534 G T SIGLEC8 Missense_Mutation p.A395E 0.16 deleterious(0.01) probably_damaging(0.964) TCGA-76-6283-01 19 53854579 53854579 T C ZNF845 Silent p.C217C 0.08 TCGA-76-6283-01 19 56241342 56241342 C T NLRP9 Missense_Mutation p.V617I 0.38 tolerated(0.43) benign(0.001) TCGA-76-6283-01 19 6828671 6828671 C T VAV1 Silent p.N377N 0.31 TCGA-76-6283-01 19 6981138 6981138 G A EMR4P RNA 0.56 TCGA-76-6283-01 1 12414081 12414081 A G VPS13D Missense_Mutation p.N3161S 0.33 benign(0.001) TCGA-76-6283-01 1 151491406 151491406 C T CGN Silent p.S137S 0.06 TCGA-76-6283-01 1 153973356 153973356 C A NUP210L Missense_Mutation p.A1788S 0.05 tolerated(0.4) benign(0.22) TCGA-76-6283-01 1 158914677 158914677 A G PYHIN1 Missense_Mutation p.T402A 0.32 tolerated(0.52) benign(0.115) TCGA-76-6283-01 1 16342135 16342135 T C HSPB7 Silent p.A151A 0.45 TCGA-76-6283-01 1 16957420 16957420 G C CROCCP2 RNA 0.28 TCGA-76-6283-01 1 179364322 179364322 C T AXDND1 Missense_Mutation p.A365V 0.34 deleterious(0.03) probably_damaging(0.923) TCGA-76-6283-01 1 186134268 186134268 C T HMCN1 Silent p.S5094S 0.57 TCGA-76-6283-01 1 204913394 204913394 T G NFASC 5'UTR 0.21 TCGA-76-6283-01 1 207140441 207140441 G A FCAMR Missense_Mutation p.A42V 0.49 deleterious(0.01) probably_damaging(0.938) TCGA-76-6283-01 1 215848243 215848243 G A USH2A Missense_Mutation p.T4337M 0.45 probably_damaging(0.992) TCGA-76-6283-01 1 216538373 216538373 G A USH2A Missense_Mutation p.P236S 0.53 benign(0.175) TCGA-76-6283-01 1 22927421 22927421 C T EPHA8 Silent p.L857L 0.24 TCGA-76-6283-01 1 248436840 248436840 C T OR2T33 Missense_Mutation p.A93T 0.23 tolerated(0.26) benign(0.048) TCGA-76-6283-01 1 25747285 25747285 C A RHCE 5'UTR 0.30 TCGA-76-6283-01 1 46165793 46165793 G C IPP Missense_Mutation p.L534V 0.49 tolerated(0.09) possibly_damaging(0.515) TCGA-76-6283-01 1 68152267 68152267 G T GADD45A Silent p.V127V 0.62 TCGA-76-6283-01 1 94522271 94522271 G A ABCA4 Silent p.S756S 0.21 TCGA-76-6283-01 20 51870661 51870661 G A TSHZ2 Missense_Mutation p.A222T 0.26 deleterious(0) probably_damaging(0.999) TCGA-76-6283-01 20 56137157 56137157 G A PCK1 Silent p.V85V 0.21 TCGA-76-6283-01 20 58467201 58467201 C T SYCP2 Silent p.S736S 0.26 TCGA-76-6283-01 21 31692021 31692021 G A KRTAP26-1 Silent p.S111S 0.60 TCGA-76-6283-01 22 16287359 16287359 T A POTEH Missense_Mutation p.D176V 0.27 deleterious(0) probably_damaging(0.999) TCGA-76-6283-01 22 25756152 25756152 G A LRP5L 5'UTR 0.31 TCGA-76-6283-01 22 32828374 32828374 C T BPIFC Missense_Mutation p.V379I 0.51 tolerated(0.4) benign(0.099) TCGA-76-6283-01 2 179742592 179742592 A G CCDC141 Intron 0.15 TCGA-76-6283-01 2 189859008 189859008 C T COL3A1 Missense_Mutation p.P415S 0.28 unknown(0) TCGA-76-6283-01 2 9628296 9628296 A G IAH1 Silent p.S195S 0.16 TCGA-76-6283-01 3 167525043 167525043 A C SERPINI1 Missense_Mutation p.E298A 0.13 deleterious(0) possibly_damaging(0.89) TCGA-76-6283-01 3 42678511 42678511 A - NKTR Frame_Shift_Del p.K440Rfs*26 0.27 TCGA-76-6283-01 3 52242221 52242221 G A ALAS1 Missense_Mutation p.D430N 0.49 deleterious(0) probably_damaging(0.969) TCGA-76-6283-01 3 52422839 52422839 G A DNAH1 Silent p.S3127S 0.38 TCGA-76-6283-01 4 104065619 104065619 G A CENPE Nonsense_Mutation p.Q1672* 0.06 TCGA-76-6283-01 4 119444540 119444540 G A CEP170P1 RNA 0.50 TCGA-76-6283-01 4 123184110 123184110 T C KIAA1109 Silent p.A2318A 0.33 TCGA-76-6283-01 4 123192519 123192519 C T KIAA1109 Missense_Mutation p.R2614W 0.24 probably_damaging(0.997) TCGA-76-6283-01 4 147227117 147227117 C T SLC10A7 Silent p.Q172Q 0.21 TCGA-76-6283-01 4 42581956 42581956 G A ATP8A1 Missense_Mutation p.R292W 0.62 deleterious(0) probably_damaging(0.998) TCGA-76-6283-01 5 111540130 111540130 G A EPB41L4A Missense_Mutation p.R440C 0.38 deleterious(0.01) probably_damaging(0.977) TCGA-76-6283-01 5 115177086 115177087 - T ATG12 Frame_Shift_Ins p.I55Nfs*2 0.18 TCGA-76-6283-01 5 122893189 122893189 G T CSNK1G3 Nonsense_Mutation p.E74* 0.38 TCGA-76-6283-01 5 135693041 135693041 C T TRPC7 Missense_Mutation p.R12H 0.53 deleterious_low_confidence(0) possibly_damaging(0.902) TCGA-76-6283-01 5 140537573 140537573 C T PCDHB17 3'UTR 0.39 TCGA-76-6283-01 5 141511419 141511419 A G NDFIP1 Missense_Mutation p.D37G 0.44 tolerated(0.08) possibly_damaging(0.697) TCGA-76-6283-01 5 161530925 161530925 A T GABRG2 Missense_Mutation p.Q261L 0.48 deleterious(0.01) benign(0.033) TCGA-76-6283-01 5 172585746 172585746 G A BNIP1 Splice_Site p.X133_splice 0.42 TCGA-76-6283-01 5 176004494 176004494 A G CDHR2 Missense_Mutation p.Q430R 0.10 deleterious(0.03) probably_damaging(0.95) TCGA-76-6283-01 5 32388633 32388636 CAGA - ZFR Frame_Shift_Del p.S763Nfs*22 0.36 TCGA-76-6283-01 5 33881270 33881270 T C ADAMTS12 Missense_Mutation p.Q148R 0.40 tolerated(0.35) benign(0.01) TCGA-76-6283-01 5 90046453 90046453 G A GPR98 Missense_Mutation p.R3687H 0.46 benign(0.002) TCGA-76-6283-01 5 90144497 90144497 G A GPR98 Missense_Mutation p.R5688Q 0.41 possibly_damaging(0.602) TCGA-76-6283-01 5 90159635 90159635 A T GPR98 Missense_Mutation p.K5939N 0.41 probably_damaging(0.937) TCGA-76-6283-01 6 116837267 116837267 A G FAM26E 3'UTR 0.54 TCGA-76-6283-01 6 32798068 32798068 A G TAP2 Silent p.Y537Y 0.41 TCGA-76-6283-01 6 41166078 41166078 G A TREML2 Missense_Mutation p.R49C 0.45 deleterious(0.01) benign(0.243) TCGA-76-6283-01 6 43417751 43417751 C T ABCC10 Silent p.R1467R 0.42 TCGA-76-6283-01 6 7576615 7576615 C T DSP Missense_Mutation p.R907C 0.37 probably_damaging(0.989) TCGA-76-6283-01 6 84799255 84799255 C G MRAP2 3'UTR 0.46 TCGA-76-6283-01 7 6628405 6628405 G A ZDHHC4 Missense_Mutation p.R300H 0.24 tolerated(1) benign(0) TCGA-76-6283-01 7 76619597 76619597 C T UPK3B Intron 0.21 TCGA-76-6283-01 7 93108737 93108737 C T CALCR Missense_Mutation p.R63Q 0.30 tolerated(0.09) possibly_damaging(0.805) TCGA-76-6283-01 8 104417070 104417070 A T SLC25A32 Missense_Mutation p.Y109N 0.45 tolerated(0.06) benign(0.208) TCGA-76-6283-01 8 19677962 19677962 C T INTS10 Missense_Mutation p.T125M 0.32 deleterious(0.01) possibly_damaging(0.817) TCGA-76-6283-01 8 88886278 88886278 C T DCAF4L2 5'UTR 0.38 TCGA-76-6283-01 X 100541563 100541563 G A TAF7L Missense_Mutation p.P135S 0.28 tolerated(0.54) benign(0.101) TCGA-76-6283-01 X 108924259 108924259 G T ACSL4 Nonsense_Mutation p.S249* 0.33 TCGA-76-6283-01 X 118975081 118975084 TCTG - UPF3B Frame_Shift_Del p.D254Efs*8 0.31 TCGA-76-6283-01 X 125685564 125685564 G A DCAF12L1 Missense_Mutation p.P343L 0.08 tolerated(0.15) benign(0.033) TCGA-76-6283-01 X 131207025 131207025 C T MST4 Missense_Mutation p.A377V 0.54 tolerated_low_confidence(0.16) benign(0.018) TCGA-76-6283-01 X 18238990 18238990 G A BEND2 5'UTR 0.47 TCGA-76-6283-01 X 47230061 47230061 G T ZNF157 5'UTR 0.29 TCGA-76-6283-01 X 62875413 62875413 T C ARHGEF9 Missense_Mutation p.R421G 0.39 tolerated(0.2) benign(0.003) TCGA-76-6283-01 X 64749656 64749656 A T LAS1L Missense_Mutation p.I206K 0.41 tolerated(0.73) benign(0.045) TCGA-76-6283-01 X 70357763 70357763 C A MED12 Missense_Mutation p.T2005N 0.27 benign(0.131) TCGA-76-6283-01 X 8555862 8555862 G A KAL1 Silent p.D233D 0.45 TCGA-76-6283-01 X 86890583 86890583 G A KLHL4 Missense_Mutation p.R578H 0.39 deleterious(0.03) probably_damaging(1) TCGA-76-6283-01 X 91133806 91133806 C T PCDH11X Missense_Mutation p.T856I 0.55 deleterious(0.05) probably_damaging(0.959) TCGA-76-6285-01 10 100249842 100249842 G A HPSE2 Silent p.L478L 0.12 TCGA-76-6285-01 10 51465417 51465417 C T AGAP7 Missense_Mutation p.G347R 0.76 tolerated(0.14) benign(0.032) TCGA-76-6285-01 11 1025025 1025025 G A MUC6 Missense_Mutation p.T1015M 0.39 unknown(0) TCGA-76-6285-01 11 19955730 19955730 C T NAV2 Missense_Mutation p.T670I 0.43 deleterious(0.04) benign(0.375) TCGA-76-6285-01 11 56143280 56143283 TTCT - OR8U1 Frame_Shift_Del p.F62Lfs*4 0.37 TCGA-76-6285-01 11 74429781 74429781 C T CHRDL2 Missense_Mutation p.R60H 0.21 deleterious(0.01) probably_damaging(1) TCGA-76-6285-01 12 117710328 117710328 G A NOS1 Silent p.Y567Y 0.51 TCGA-76-6285-01 12 123200222 123200222 G A HCAR3 Missense_Mutation p.P355S 0.41 tolerated_low_confidence(0.05) benign(0.041) TCGA-76-6285-01 12 18658397 18658397 T C PIK3C2G Splice_Site p.X1067_splice 0.41 TCGA-76-6285-01 12 52841112 52841112 A G KRT6B Silent p.S519S 0.35 TCGA-76-6285-01 12 52994994 52994994 G A KRT72 Silent p.S81S 0.56 TCGA-76-6285-01 12 57389618 57389618 G T GPR182 Nonsense_Mutation p.E209* 0.38 TCGA-76-6285-01 12 95445680 95445680 C A NR2C1 Missense_Mutation p.V275L 0.44 tolerated(0.12) probably_damaging(0.986) TCGA-76-6285-01 14 89130847 89130847 C T EML5 Nonsense_Mutation p.W1133* 0.78 TCGA-76-6285-01 16 26147153 26147153 C T HS3ST4 Missense_Mutation p.R319W 0.44 deleterious(0) probably_damaging(0.992) TCGA-76-6285-01 16 30409831 30409831 G C ZNF48 Silent p.S420S 0.20 TCGA-76-6285-01 17 21318767 21318767 C T KCNJ12 Missense_Mutation p.T38M 0.13 deleterious(0.03) possibly_damaging(0.829) TCGA-76-6285-01 17 3524530 3524530 C T SHPK Splice_Site p.X275_splice 0.54 TCGA-76-6285-01 17 35631152 35631152 G A ACACA Missense_Mutation p.R314C 0.74 deleterious(0.02) benign(0.376) TCGA-76-6285-01 17 40997352 40997352 G A AOC2 Missense_Mutation p.V237M 0.80 deleterious(0.01) probably_damaging(0.95) TCGA-76-6285-01 18 47463738 47463738 A G MYO5B Silent p.D594D 0.12 TCGA-76-6285-01 18 47797684 47797684 C A MBD1 Intron 0.67 TCGA-76-6285-01 19 1257154 1257154 T G MIDN Missense_Mutation p.S430R 0.46 tolerated(0.14) benign(0.307) TCGA-76-6285-01 19 22846866 22846866 C T ZNF492 Missense_Mutation p.T132M 0.39 deleterious(0.01) benign(0.011) TCGA-76-6285-01 19 41129963 41129963 G C LTBP4 Missense_Mutation p.V1336L 0.64 deleterious(0.01) benign(0.44) TCGA-76-6285-01 19 4445483 4445483 C A UBXN6 3'UTR 0.43 TCGA-76-6285-01 1 12908039 12908039 G A HNRNPCL1 Missense_Mutation p.A35V 0.23 tolerated(0.07) benign(0.051) TCGA-76-6285-01 1 152275685 152275685 C A FLG Nonsense_Mutation p.E3893* 0.37 TCGA-76-6285-01 1 158153826 158153826 G A CD1D Splice_Site p.X329_splice 0.38 TCGA-76-6285-01 1 22987924 22987924 C T C1QB 3'UTR 0.35 TCGA-76-6285-01 1 249106332 249106332 C A SH3BP5L Nonsense_Mutation p.E317* 0.48 TCGA-76-6285-01 1 34123559 34123559 C T CSMD2 Silent p.P1438P 0.44 TCGA-76-6285-01 1 43774798 43774798 T A TIE1 Missense_Mutation p.L395H 0.27 deleterious(0) probably_damaging(0.975) TCGA-76-6285-01 1 57341829 57341829 C T C8A Silent p.D137D 0.44 TCGA-76-6285-01 20 20033098 20033098 C T CRNKL1 Silent p.P124P 0.46 TCGA-76-6285-01 20 2298127 2298127 G A TGM3 Missense_Mutation p.V327I 0.45 tolerated(0.38) benign(0.032) TCGA-76-6285-01 20 23065129 23065129 G A CD93 Silent p.S567S 0.38 TCGA-76-6285-01 20 31596448 31596448 C T BPIFB2 Missense_Mutation p.P23L 0.25 deleterious(0.02) benign(0.097) TCGA-76-6285-01 20 47262489 47262489 T C PREX1 Missense_Mutation p.R1138G 0.70 deleterious(0) benign(0.423) TCGA-76-6285-01 20 62197056 62197056 G A HELZ2 Missense_Mutation p.A1040V 0.54 tolerated(0.39) benign(0.006) TCGA-76-6285-01 22 17586805 17586805 G A IL17RA Missense_Mutation p.V336I 0.56 tolerated(0.17) benign(0.029) TCGA-76-6285-01 22 24219515 24219515 G A SLC2A11 Intron 0.38 TCGA-76-6285-01 22 42473575 42473575 C G FAM109B Missense_Mutation p.A93G 0.65 tolerated(0.74) possibly_damaging(0.656) TCGA-76-6285-01 2 132264002 132264002 A T AC093838.4 RNA 0.51 TCGA-76-6285-01 2 174820235 174820235 A G SP3 Silent p.S335S 0.38 TCGA-76-6285-01 2 232653347 232653347 A T COPS7B Missense_Mutation p.S23C 0.44 deleterious(0) benign(0.219) TCGA-76-6285-01 3 129696024 129696024 C T TRH Missense_Mutation p.R232W 0.47 deleterious(0.03) benign(0.022) TCGA-76-6285-01 3 1339608 1339608 C T CNTN6 Missense_Mutation p.R232C 0.28 deleterious(0) probably_damaging(0.961) TCGA-76-6285-01 3 13613045 13613045 C A FBLN2 Missense_Mutation p.A397D 0.24 tolerated(0.26) benign(0.36) TCGA-76-6285-01 3 148768105 148768105 C T HLTF Missense_Mutation p.G511S 0.28 deleterious(0) probably_damaging(1) TCGA-76-6285-01 4 156764907 156764907 C A ASIC5 Missense_Mutation p.V263L 0.71 tolerated(0.47) benign(0.008) TCGA-76-6285-01 5 128368954 128368954 G T SLC27A6 Missense_Mutation p.M613I 0.38 tolerated(0.86) benign(0.001) TCGA-76-6285-01 5 52344242 52344242 C T ITGA2 Missense_Mutation p.T146M 0.35 deleterious(0.01) probably_damaging(0.999) TCGA-76-6285-01 5 73148496 73148496 C T ARHGEF28 Missense_Mutation p.S590L 0.04 deleterious(0.03) benign(0.001) TCGA-76-6285-01 5 9629468 9629468 G A TAS2R1 Missense_Mutation p.A226V 0.39 deleterious(0) probably_damaging(0.95) TCGA-76-6285-01 6 125541243 125541243 G A TPD52L1 Silent p.P13P 0.86 TCGA-76-6285-01 6 158454502 158454502 C T SYNJ2 Silent p.H167H 0.76 TCGA-76-6285-01 6 158483049 158483049 C T SYNJ2 Missense_Mutation p.A327V 0.73 tolerated(0.07) benign(0.223) TCGA-76-6285-01 6 161587289 161587289 C T AGPAT4 Silent p.G113G 0.75 TCGA-76-6285-01 6 32975124 32975124 G A HLA-DOA Missense_Mutation p.H193Y 0.46 deleterious(0) probably_damaging(1) TCGA-76-6285-01 6 43042493 43042493 C G KLC4 3'UTR 0.67 TCGA-76-6285-01 6 85446874 85446874 C T TBX18 Silent p.P451P 0.75 TCGA-76-6285-01 7 100086489 100086489 C T NYAP1 Missense_Mutation p.T382M 0.23 deleterious(0.02) probably_damaging(0.997) TCGA-76-6285-01 7 103341383 103341383 C T RELN Silent p.A292A 0.25 TCGA-76-6285-01 7 123595133 123595133 G A SPAM1 Missense_Mutation p.R346Q 0.22 tolerated(1) benign(0.03) TCGA-76-6285-01 7 136700700 136700700 G A CHRM2 Missense_Mutation p.R363H 0.23 tolerated(0.06) probably_damaging(0.911) TCGA-76-6285-01 7 55755527 55755527 G A RNU6-389P 3'Flank 0.31 TCGA-76-6285-01 7 66532361 66532361 G A TYW1 Silent p.A415A 0.36 TCGA-76-6285-01 8 109240547 109240547 T C EIF3E Missense_Mutation p.N224S 0.44 deleterious(0) benign(0.343) TCGA-76-6285-01 8 143558906 143558906 C T BAI1 Silent p.C461C 0.05 TCGA-76-6285-01 9 132394975 132394975 G A NTMT1 5'UTR 0.36 TCGA-76-6285-01 X 142803892 142803892 G - SPANXN2 5'UTR 0.42 TCGA-76-6285-01 X 55514642 55514642 T C USP51 Missense_Mutation p.N244S 0.87 tolerated(0.29) benign(0.433) TCGA-76-6285-01 X 84562214 84562214 G A POF1B Silent p.Y373Y 0.80 TCGA-76-6286-01 10 75556970 75556970 G A ZSWIM8 Missense_Mutation p.R1125H 0.84 deleterious_low_confidence(0.04) probably_damaging(0.989) TCGA-76-6286-01 10 89720661 89720661 T C PTEN Missense_Mutation p.F271S 0.73 deleterious(0) possibly_damaging(0.877) TCGA-76-6286-01 11 119059542 119059542 G T PDZD3 Missense_Mutation p.C418F 0.41 tolerated(0.06) benign(0.047) TCGA-76-6286-01 11 1273709 1273709 G A MUC5B Silent p.S5000S 0.24 TCGA-76-6286-01 11 55038007 55038007 G A TRIM48 3'UTR 0.38 TCGA-76-6286-01 11 55681277 55681277 C T OR5W2 Missense_Mutation p.R261Q 0.41 tolerated(0.09) benign(0.23) TCGA-76-6286-01 11 65375157 65375157 C T MAP3K11 Silent p.K400K 0.74 TCGA-76-6286-01 11 7818411 7818411 G A OR5P2 Nonsense_Mutation p.R27* 0.45 TCGA-76-6286-01 11 93808410 93808410 C T HEPHL1 Silent p.S525S 0.36 TCGA-76-6286-01 12 10854621 10854621 G A YBX3 Missense_Mutation p.R331C 0.49 tolerated(0.08) probably_damaging(0.997) TCGA-76-6286-01 12 130907060 130907060 C T RIMBP2 Missense_Mutation p.R803Q 0.54 tolerated(0.07) benign(0.135) TCGA-76-6286-01 12 52699175 52699175 G A KRT86 Nonsense_Mutation p.W296* 0.42 TCGA-76-6286-01 12 70990028 70990028 A G PTPRB Silent p.S353S 0.06 TCGA-76-6286-01 13 23913301 23913301 T C SACS Missense_Mutation p.I1572V 0.12 probably_damaging(0.946) TCGA-76-6286-01 13 48941694 48941694 T G RB1 Nonsense_Mutation p.L335* 0.77 TCGA-76-6286-01 14 102467294 102467294 C T DYNC1H1 Nonsense_Mutation p.R1360* 0.45 TCGA-76-6286-01 14 19378054 19378054 A C OR11H12 Missense_Mutation p.H154P 0.14 tolerated(0.14) benign(0.008) TCGA-76-6286-01 15 42193062 42193062 G A EHD4 Silent p.N469N 0.10 TCGA-76-6286-01 15 90188330 90188330 C T KIF7 Missense_Mutation p.R702Q 0.82 tolerated(0.27) benign(0.124) TCGA-76-6286-01 17 36288289 36288289 C T TBC1D3F Silent p.P125P 0.13 TCGA-76-6286-01 17 37901165 37901165 G C GRB7 Missense_Mutation p.K336N 0.24 deleterious(0) probably_damaging(1) TCGA-76-6286-01 17 38910206 38910206 A G KRT25 Missense_Mutation p.V192A 0.42 deleterious(0.01) benign(0.077) TCGA-76-6286-01 17 39564814 39564814 G A AC003958.2 RNA 0.67 TCGA-76-6286-01 17 59946709 59946709 G A INTS2 Silent p.V1029V 0.43 TCGA-76-6286-01 17 708351 708351 G A NXN Silent p.N319N 0.23 TCGA-76-6286-01 17 73258939 73258939 C T MRPS7 Silent p.L110L 0.35 TCGA-76-6286-01 17 7572986 7572986 G T TP53 Missense_Mutation p.Q375K 0.36 tolerated(0.57) benign(0.009) TCGA-76-6286-01 17 7577580 7577580 T C TP53 Missense_Mutation p.Y234C 0.42 deleterious(0) probably_damaging(0.992) TCGA-76-6286-01 19 1397419 1397419 G A GAMT 3'Flank 0.36 TCGA-76-6286-01 19 15067342 15067342 G C SLC1A6 Missense_Mutation p.P372R 0.50 tolerated(0.85) probably_damaging(0.999) TCGA-76-6286-01 19 15574925 15574925 C T RASAL3 Missense_Mutation p.R82H 0.42 tolerated(0.08) benign(0.015) TCGA-76-6286-01 19 17000842 17000842 C T F2RL3 Missense_Mutation p.R190W 0.66 deleterious(0.04) benign(0.007) TCGA-76-6286-01 19 3738562 3738562 G A TJP3 Missense_Mutation p.V441M 0.46 tolerated(0.17) benign(0.052) TCGA-76-6286-01 19 38909096 38909096 C G RASGRP4 Missense_Mutation p.V258L 0.43 deleterious(0) probably_damaging(0.998) TCGA-76-6286-01 19 51506296 51506296 C G KLK9 3'UTR 0.35 TCGA-76-6286-01 19 51919569 51919569 G A SIGLEC10 Missense_Mutation p.T250M 0.39 tolerated(0.13) benign(0.012) TCGA-76-6286-01 19 58564824 58564824 C T ZSCAN1 Missense_Mutation p.P211L 0.44 deleterious(0.01) possibly_damaging(0.614) TCGA-76-6286-01 19 7607932 7607932 G A PNPLA6 Missense_Mutation p.A533T 0.07 deleterious(0.01) benign(0.325) TCGA-76-6286-01 1 150437160 150437160 T A RPRD2 Silent p.S523S 0.33 TCGA-76-6286-01 1 173526582 173526582 C G SLC9C2 Missense_Mutation p.W371S 0.32 deleterious(0) probably_damaging(0.988) TCGA-76-6286-01 1 237791219 237791219 C T RYR2 Silent p.D2093D 0.28 TCGA-76-6286-01 1 47395771 47395771 C T CYP4A11 3'UTR 0.37 TCGA-76-6286-01 1 55207175 55207175 C G TTC4 Missense_Mutation p.Q385E 0.46 deleterious(0.04) benign(0.034) TCGA-76-6286-01 1 5934716 5934716 C T NPHP4 Missense_Mutation p.V1016I 0.19 tolerated(0.33) benign(0.026) TCGA-76-6286-01 1 68905261 68905261 C A RPE65 Missense_Mutation p.K236N 0.41 deleterious(0) probably_damaging(1) TCGA-76-6286-01 20 57768855 57768855 A C ZNF831 Missense_Mutation p.R927S 0.10 tolerated(0.63) benign(0.002) TCGA-76-6286-01 20 60503346 60503346 G A CDH4 Missense_Mutation p.E624K 0.10 deleterious(0.02) benign(0.025) TCGA-76-6286-01 20 60793588 60793588 C T HRH3 Missense_Mutation p.V126M 0.93 deleterious(0) probably_damaging(0.954) TCGA-76-6286-01 21 31768677 31768677 C T KRTAP13-1 Silent p.P91P 0.44 TCGA-76-6286-01 21 42720528 42720528 C T FAM3B Silent p.N165N 0.30 TCGA-76-6286-01 2 109522815 109522815 G A EDAR Missense_Mutation p.R325W 0.42 deleterious(0) probably_damaging(0.996) TCGA-76-6286-01 2 125504853 125504853 C A CNTNAP5 Missense_Mutation p.P708T 0.33 tolerated(1) benign(0.005) TCGA-76-6286-01 2 131984443 131984443 A G POTEE Silent p.Q286Q 0.18 TCGA-76-6286-01 2 185731110 185731110 G C ZNF804A Missense_Mutation p.K42N 0.46 deleterious(0) probably_damaging(0.981) TCGA-76-6286-01 2 202552079 202552079 G A MPP4 Missense_Mutation p.R99C 0.50 tolerated(0.08) benign(0.022) TCGA-76-6286-01 2 36818046 36818046 C T FEZ2 Silent p.G125G 0.33 TCGA-76-6286-01 2 47206005 47206005 A G TTC7A Silent p.E241E 0.10 TCGA-76-6286-01 2 48809567 48809567 C T STON1-GTF2A1L Missense_Mutation p.R599C 0.35 deleterious(0) probably_damaging(1) TCGA-76-6286-01 3 178916726 178916726 G A PIK3CA Missense_Mutation p.R38H 0.46 deleterious(0.01) probably_damaging(0.999) TCGA-76-6286-01 3 48520627 48520627 C T SHISA5 Silent p.S91S 0.29 TCGA-76-6286-01 3 50513588 50513588 G A CACNA2D2 Silent p.G83G 0.38 TCGA-76-6286-01 4 100463301 100463301 G T C4orf17 3'UTR 0.09 TCGA-76-6286-01 4 104579420 104579420 C T TACR3 Missense_Mutation p.R230H 0.59 deleterious(0.01) probably_damaging(0.976) TCGA-76-6286-01 4 146697085 146697085 C T ZNF827 Missense_Mutation p.C850Y 0.35 deleterious(0) possibly_damaging(0.843) TCGA-76-6286-01 4 183651467 183651467 C T TENM3 Silent p.D900D 0.41 TCGA-76-6286-01 4 74719597 74719597 C T PF4V1 Silent p.A66A 0.39 TCGA-76-6286-01 5 161119060 161119060 G A GABRA6 Missense_Mutation p.V314I 0.48 deleterious(0.05) probably_damaging(0.997) TCGA-76-6286-01 5 72383422 72383422 G A FCHO2 Missense_Mutation p.G751E 0.46 deleterious(0) probably_damaging(1) TCGA-76-6286-01 6 130762588 130762588 G A TMEM200A Missense_Mutation p.V341I 0.50 tolerated(0.19) benign(0) TCGA-76-6286-01 6 25450163 25450163 C T LRRC16A Missense_Mutation p.R137C 0.45 deleterious(0) possibly_damaging(0.832) TCGA-76-6286-01 6 26377246 26377246 C T BTN3A2 3'UTR 0.37 TCGA-76-6286-01 6 30548286 30548286 A G ABCF1 Missense_Mutation p.K223R 0.28 tolerated_low_confidence(0.2) benign(0.004) TCGA-76-6286-01 6 32134567 32134567 C A EGFL8 Missense_Mutation p.P105Q 0.10 deleterious(0.01) probably_damaging(0.999) TCGA-76-6286-01 7 100682802 100682802 C T MUC17 Missense_Mutation p.T2702M 0.29 unknown(0) TCGA-76-6286-01 7 100684314 100684314 C G MUC17 Missense_Mutation p.T3206S 0.05 benign(0.021) TCGA-76-6286-01 7 148529726 148529726 C G EZH2 Missense_Mutation p.M121I 0.26 tolerated(0.1) probably_damaging(0.93) TCGA-76-6286-01 7 6628405 6628405 G A ZDHHC4 Missense_Mutation p.R300H 0.30 tolerated(1) benign(0) TCGA-76-6286-01 7 72658003 72658003 G A GTF2IRD2P1 RNA 0.16 TCGA-76-6286-01 7 82583736 82583736 G T PCLO Missense_Mutation p.P2178H 0.29 unknown(0) TCGA-76-6286-01 8 104897848 104897848 C T RIMS2 Missense_Mutation p.R341C 0.38 deleterious_low_confidence(0.02) probably_damaging(0.999) TCGA-76-6286-01 8 70617355 70617355 A G SLCO5A1 Silent p.S511S 0.44 TCGA-76-6286-01 9 119770488 119770488 A G ASTN2 Silent p.L441L 0.47 TCGA-76-6286-01 9 17330744 17330744 A G CNTLN Missense_Mutation p.I486V 0.41 tolerated(0.61) benign(0.001) TCGA-76-6286-01 9 37515999 37515999 G T FBXO10 Silent p.I866I 0.48 TCGA-76-6286-01 9 75435855 75435855 G A TMC1 Missense_Mutation p.V621I 0.38 tolerated(0.06) probably_damaging(0.999) TCGA-76-6286-01 X 11790368 11790371 TTGT - MSL3 Frame_Shift_Del p.F460* 0.91 TCGA-76-6286-01 X 132161219 132161219 G A USP26 Missense_Mutation p.R344W 0.95 deleterious(0) possibly_damaging(0.601) TCGA-76-6286-01 X 147924922 147924922 C A AFF2 Silent p.T409T 0.88 TCGA-76-6286-01 X 153588445 153588445 C T FLNA Missense_Mutation p.V1240M 0.83 deleterious(0) probably_damaging(0.988) TCGA-76-6286-01 X 48819889 48819889 C T KCND1 Missense_Mutation p.G633S 0.79 tolerated_low_confidence(0.37) benign(0.003) TCGA-76-6286-01 X 65242302 65242302 T C VSIG4 Missense_Mutation p.R335G 0.89 deleterious(0.01) benign(0.276) TCGA-76-6656-01 10 117061383 117061383 C T ATRNL1 Missense_Mutation p.A883V 0.85 tolerated(0.29) benign(0.011) TCGA-76-6656-01 10 118434624 118434624 C T HSPA12A Missense_Mutation p.D566N 0.71 tolerated(0.09) benign(0.099) TCGA-76-6656-01 10 47158764 47158764 G A ANXA8L1 3'UTR 0.73 TCGA-76-6656-01 10 70332622 70332622 A G TET1 Missense_Mutation p.Q176R 0.74 deleterious(0) benign(0.295) TCGA-76-6656-01 11 128786516 128786516 C T KCNJ5 Missense_Mutation p.P384S 0.37 tolerated(0.47) benign(0.001) TCGA-76-6656-01 11 33566719 33566719 G A KIAA1549L Missense_Mutation p.M763I 0.37 tolerated_low_confidence(0.57) benign(0.002) TCGA-76-6656-01 11 40136459 40136459 T C LRRC4C Missense_Mutation p.M462V 0.37 tolerated_low_confidence(1) benign(0) TCGA-76-6656-01 11 4410895 4410895 C A TRIM21 Missense_Mutation p.A165S 0.34 tolerated(0.15) benign(0.069) TCGA-76-6656-01 11 4944754 4944754 G A OR51G1 Silent p.R272R 0.41 TCGA-76-6656-01 11 61895641 61895641 C T INCENP Missense_Mutation p.T3M 0.34 deleterious_low_confidence(0) unknown(0) TCGA-76-6656-01 11 77413468 77413468 T C RSF1 Missense_Mutation p.N269S 0.49 tolerated(0.8) benign(0.002) TCGA-76-6656-01 12 114282581 114282581 C T RBM19 Missense_Mutation p.A893T 0.38 deleterious(0.04) possibly_damaging(0.595) TCGA-76-6656-01 12 71977624 71977624 G A LGR5 Missense_Mutation p.V612M 0.38 tolerated(0.26) benign(0.149) TCGA-76-6656-01 12 94761707 94761707 C G CCDC41 Missense_Mutation p.E402D 0.52 deleterious(0.01) probably_damaging(0.996) TCGA-76-6656-01 13 103330712 103330712 G A TPP2 3'UTR 0.46 TCGA-76-6656-01 13 25417989 25417989 C T RNF17 Missense_Mutation p.S904F 0.50 tolerated(0.09) possibly_damaging(0.831) TCGA-76-6656-01 13 26621160 26621160 C T SHISA2 Missense_Mutation p.A127T 0.33 tolerated(0.06) probably_damaging(1) TCGA-76-6656-01 13 46937309 46937309 C T KIAA0226L Missense_Mutation p.R289H 0.30 tolerated(0.16) benign(0.411) TCGA-76-6656-01 13 58299189 58299189 C G PCDH17 Missense_Mutation p.P1081A 0.35 deleterious_low_confidence(0.02) benign(0.3) TCGA-76-6656-01 13 72147083 72147083 T C DACH1 Silent p.A398A 0.31 TCGA-76-6656-01 14 106780933 106780933 A T IGHV4-28 Missense_Mutation p.W5R 0.22 deleterious(0.01) benign(0.018) TCGA-76-6656-01 14 64450574 64450574 A G SYNE2 Silent p.E707E 0.23 TCGA-76-6656-01 15 41146113 41146113 C T SPINT1 Missense_Mutation p.A316V 0.39 tolerated(0.67) benign(0) TCGA-76-6656-01 15 50593063 50593063 G T GABPB1 Missense_Mutation p.S219Y 0.53 tolerated(0.05) probably_damaging(0.982) TCGA-76-6656-01 16 14029049 14029049 G A ERCC4 Silent p.L420L 0.43 TCGA-76-6656-01 16 58587731 58587731 C T CNOT1 Silent p.L975L 0.21 TCGA-76-6656-01 16 8998407 8998407 G A USP7 Missense_Mutation p.A530V 0.41 tolerated(0.11) benign(0.003) TCGA-76-6656-01 17 10215249 10215249 G A MYH13 Nonsense_Mutation p.R1504* 0.36 TCGA-76-6656-01 17 18874559 18874559 C T FAM83G 3'UTR 0.09 TCGA-76-6656-01 17 38173231 38173231 C A CSF3 3'UTR 0.10 TCGA-76-6656-01 17 39637207 39637207 C A KRT35 Missense_Mutation p.S48I 0.28 tolerated(0.12) benign(0.276) TCGA-76-6656-01 17 8791674 8791674 C T PIK3R5 Missense_Mutation p.R477H 0.43 tolerated(0.4) benign(0.003) TCGA-76-6656-01 19 15289676 15289676 C T NOTCH3 Silent p.P1265P 0.29 TCGA-76-6656-01 19 18180414 18180414 G A IL12RB1 Silent p.D377D 0.36 TCGA-76-6656-01 19 19466617 19466617 G A MAU2 3'UTR 0.30 TCGA-76-6656-01 19 23544856 23544856 G - ZNF91 Frame_Shift_Del p.A310Lfs*61 0.10 TCGA-76-6656-01 19 2878077 2878077 C T ZNF556 Missense_Mutation p.T374M 0.26 deleterious(0) possibly_damaging(0.717) TCGA-76-6656-01 19 33604693 33604693 C T GPATCH1 Missense_Mutation p.P638L 0.33 deleterious(0) probably_damaging(0.986) TCGA-76-6656-01 19 3557226 3557226 C T MFSD12 Missense_Mutation p.G59E 0.27 probably_damaging(1) TCGA-76-6656-01 19 3918804 3918804 C T ATCAY Silent p.S334S 0.25 TCGA-76-6656-01 19 41622139 41622139 G A CYP2F1 Missense_Mutation p.V16I 0.34 tolerated(0.44) benign(0) TCGA-76-6656-01 19 56477731 56477731 G A NLRP8 Missense_Mutation p.R789H 0.23 tolerated(0.55) benign(0.003) TCGA-76-6656-01 19 5844141 5844141 G A FUT3 Missense_Mutation p.T237M 0.29 tolerated(0.12) possibly_damaging(0.888) TCGA-76-6656-01 19 9047128 9047128 C G MUC16 Missense_Mutation p.M11501I 0.29 benign(0.003) TCGA-76-6656-01 19 9082859 9082859 T A MUC16 Nonsense_Mutation p.R2986* 0.28 TCGA-76-6656-01 1 115168646 115168646 G A DENND2C 5'UTR 0.42 TCGA-76-6656-01 1 144951943 144951943 C A PDE4DIP Intron 0.20 TCGA-76-6656-01 1 152282565 152282565 G C FLG Missense_Mutation p.D1599E 0.41 possibly_damaging(0.739) TCGA-76-6656-01 1 156713958 156713958 C T HDGF Silent p.L178L 0.45 TCGA-76-6656-01 1 160797691 160797691 G C LY9 3'UTR 0.43 TCGA-76-6656-01 1 186645642 186645642 C T PTGS2 Nonsense_Mutation p.W309* 0.36 TCGA-76-6656-01 1 20944980 20944980 G A CDA Silent p.P120P 0.30 TCGA-76-6656-01 1 247875393 247875393 A C OR6F1 Missense_Mutation p.I222S 0.34 deleterious(0) possibly_damaging(0.864) TCGA-76-6656-01 1 247902798 247902798 C T OR14K1 Silent p.D294D 0.26 TCGA-76-6656-01 1 37356675 37356675 G A GRIK3 Silent p.D46D 0.42 TCGA-76-6656-01 1 44086251 44086251 G A PTPRF Splice_Site p.X1788_splice 0.36 TCGA-76-6656-01 1 72058647 72058647 A G NEGR1 Missense_Mutation p.F265L 0.52 tolerated(0.65) benign(0.003) TCGA-76-6656-01 1 91740328 91740328 C T HFM1 Silent p.E1209E 0.35 TCGA-76-6656-01 20 36841519 36841519 G A KIAA1755 Silent p.S1176S 0.17 TCGA-76-6656-01 20 42965819 42965819 G A R3HDML Missense_Mutation p.V8M 0.27 tolerated(0.12) benign(0.046) TCGA-76-6656-01 21 45545899 45545899 T C PWP2 Missense_Mutation p.L658S 0.40 deleterious(0) probably_damaging(0.934) TCGA-76-6656-01 21 45919792 45919792 C T TSPEAR Silent p.A628A 0.67 TCGA-76-6656-01 22 22843649 22843649 G A ZNF280B Silent p.D25D 0.58 TCGA-76-6656-01 22 43603579 43603579 C T SCUBE1 Silent p.G925G 0.36 TCGA-76-6656-01 22 50588117 50588117 G A MOV10L1 Missense_Mutation p.G901R 0.47 deleterious(0) probably_damaging(0.994) TCGA-76-6656-01 2 128384614 128384614 G A MYO7B Missense_Mutation p.R1401H 0.45 deleterious(0.01) possibly_damaging(0.487) TCGA-76-6656-01 2 135738842 135738842 G A MAP3K19 Missense_Mutation p.P1157S 0.44 deleterious(0) probably_damaging(0.942) TCGA-76-6656-01 2 153463859 153463859 G A FMNL2 Missense_Mutation p.G295R 0.34 benign(0.171) TCGA-76-6656-01 2 207509344 207509344 G A AC010731.4 RNA 0.48 TCGA-76-6656-01 2 218925291 218925291 G T CXCR2P1 RNA 0.38 TCGA-76-6656-01 2 85051303 85051303 G A TRABD2A Missense_Mutation p.R321W 0.41 deleterious(0.02) possibly_damaging(0.526) TCGA-76-6656-01 2 89266213 89266213 G A IGKV1-6 Silent p.L15L 0.40 TCGA-76-6656-01 2 97372937 97372937 C T LMAN2L 3'UTR 0.24 TCGA-76-6656-01 3 122632727 122632727 C T SEMA5B Missense_Mutation p.V758M 0.31 deleterious(0) probably_damaging(1) TCGA-76-6656-01 3 186917605 186917605 G A RTP1 Missense_Mutation p.R180H 0.48 deleterious(0.05) possibly_damaging(0.708) TCGA-76-6656-01 4 159052126 159052126 T C FAM198B Silent p.R396R 0.48 TCGA-76-6656-01 4 24878210 24878210 T C CCDC149 Missense_Mutation p.N58S 0.40 deleterious(0.01) possibly_damaging(0.674) TCGA-76-6656-01 4 66217156 66217156 C A EPHA5 Missense_Mutation p.G820V 0.39 deleterious(0) probably_damaging(0.999) TCGA-76-6656-01 4 80328891 80328891 C A GK2 Missense_Mutation p.R155L 0.43 tolerated(0.07) possibly_damaging(0.878) TCGA-76-6656-01 4 88414795 88414795 T C SPARCL1 Missense_Mutation p.Q386R 0.42 deleterious(0.05) benign(0.118) TCGA-76-6656-01 5 101599411 101599411 G A SLCO4C1 Silent p.Y292Y 0.31 TCGA-76-6656-01 5 1216774 1216774 C T SLC6A19 Missense_Mutation p.T330I 0.38 deleterious(0.03) probably_damaging(0.982) TCGA-76-6656-01 5 140516927 140516927 C G PCDHB5 Missense_Mutation p.H637Q 0.28 tolerated_low_confidence(0.36) benign(0.063) TCGA-76-6656-01 5 140554075 140554075 C T PCDHB7 Silent p.D553D 0.36 TCGA-76-6656-01 5 140720777 140720777 C T PCDHGA2 Missense_Mutation p.R747W 0.44 deleterious_low_confidence(0) probably_damaging(0.915) TCGA-76-6656-01 5 428029 428029 C T AHRR Silent p.P294P 0.42 TCGA-76-6656-01 5 54329635 54329635 G A GZMK Missense_Mutation p.A226T 0.27 deleterious(0) probably_damaging(0.967) TCGA-76-6656-01 5 67589138 67589138 G A PIK3R1 Missense_Mutation p.G376R 0.25 deleterious(0) probably_damaging(1) TCGA-76-6656-01 5 85582753 85582753 C A NBPF22P RNA 0.24 TCGA-76-6656-01 6 100896034 100896034 C T SIM1 Missense_Mutation p.A280T 0.22 tolerated(0.13) possibly_damaging(0.582) TCGA-76-6656-01 6 101073206 101073206 A G ASCC3 Silent p.I1549I 0.46 TCGA-76-6656-01 6 127912822 127912822 G A C6orf58 3'UTR 0.45 TCGA-76-6656-01 6 152554981 152554981 G A SYNE1 Missense_Mutation p.R6883C 0.36 benign(0.001) TCGA-76-6656-01 6 165808689 165808689 G A PDE10A Missense_Mutation p.R496W 0.38 deleterious(0.01) benign(0.295) TCGA-76-6656-01 6 38850799 38850799 T G DNAH8 Missense_Mutation p.L2441V 0.38 probably_damaging(1) TCGA-76-6656-01 6 44222858 44222858 T - SLC35B2 Frame_Shift_Del p.Y295Lfs*8 0.33 TCGA-76-6656-01 6 52699018 52699018 C T GSTA5 Missense_Mutation p.C112Y 0.48 tolerated(1) benign(0.139) TCGA-76-6656-01 6 76545638 76545638 G C MYO6 Missense_Mutation p.G173A 0.28 tolerated(0.06) unknown(0) TCGA-76-6656-01 7 119915031 119915031 C T KCND2 Silent p.Y115Y 0.28 TCGA-76-6656-01 7 128445464 128445464 G A CCDC136 Silent p.T278T 0.32 TCGA-76-6656-01 7 142570125 142570125 C T TRPV6 Missense_Mutation p.R632Q 0.24 deleterious(0.05) possibly_damaging(0.84) TCGA-76-6656-01 7 143884450 143884450 C T ARHGEF35 Missense_Mutation p.E343K 0.21 tolerated(0.58) benign(0.002) TCGA-76-6656-01 7 30830978 30830978 C T FAM188B Silent p.A287A 0.33 TCGA-76-6656-01 7 4050739 4050739 C A SDK1 Missense_Mutation p.T758K 0.31 deleterious(0) possibly_damaging(0.87) TCGA-76-6656-01 7 4189057 4189057 G A SDK1 Silent p.S1529S 0.45 TCGA-76-6656-01 7 55220329 55220329 G A EGFR Missense_Mutation p.C240Y 0.19 deleterious(0) probably_damaging(1) TCGA-76-6656-01 7 56151084 56151084 T C PHKG1 Missense_Mutation p.N177S 0.31 tolerated(0.1) benign(0.253) TCGA-76-6656-01 7 71571179 71571179 G A CALN1 Silent p.S115S 0.31 TCGA-76-6656-01 7 93113265 93113265 G A CALCR Intron 0.29 TCGA-76-6656-01 8 134239690 134239690 G A WISP1 Missense_Mutation p.A281T 0.43 tolerated(0.41) benign(0.024) TCGA-76-6656-01 8 16012638 16012638 G A MSR1 Missense_Mutation p.P278L 0.42 deleterious(0.02) possibly_damaging(0.691) TCGA-76-6656-01 8 70964463 70964463 C A PRDM14 Missense_Mutation p.C522F 0.40 deleterious(0) probably_damaging(0.958) TCGA-76-6656-01 8 98731338 98731338 G A MTDH Missense_Mutation p.R481H 0.45 tolerated(0.14) benign(0.006) TCGA-76-6656-01 9 137716532 137716532 C T COL5A1 Silent p.D1595D 0.33 TCGA-76-6656-01 9 95481762 95481762 G A BICD2 Missense_Mutation p.R389C 0.39 deleterious(0) possibly_damaging(0.858) TCGA-76-6656-01 X 105011554 105011554 C T IL1RAPL2 Missense_Mutation p.P654L 0.86 deleterious_low_confidence(0.01) benign(0.162) TCGA-76-6656-01 X 141290669 141290669 C T MAGEC2 Missense_Mutation p.V369I 0.82 tolerated_low_confidence(0.96) unknown(0) TCGA-76-6656-01 X 44929255 44929255 G A KDM6A Missense_Mutation p.M785I 0.77 tolerated_low_confidence(0.97) benign(0) TCGA-76-6657-01 10 112269798 112269798 G A DUSP5 Missense_Mutation p.G257S 0.68 deleterious(0) probably_damaging(0.997) TCGA-76-6657-01 10 115341658 115341658 C A HABP2 Missense_Mutation p.P288T 0.67 tolerated(0.2) benign(0.016) TCGA-76-6657-01 10 72520618 72520618 C T ADAMTS14 3'UTR 0.68 TCGA-76-6657-01 10 89692852 89692856 AAGTG - PTEN Frame_Shift_Del p.S113Rfs*2 0.51 TCGA-76-6657-01 10 96827103 96827103 T G CYP2C8 Missense_Mutation p.S115R 0.60 deleterious(0) probably_damaging(1) TCGA-76-6657-01 11 104899923 104899923 C A CASP1 Nonsense_Mutation p.E312* 0.35 TCGA-76-6657-01 11 124179842 124179842 G A OR8D1 Missense_Mutation p.S274F 0.42 deleterious(0) probably_damaging(0.911) TCGA-76-6657-01 11 124294437 124294439 ACT - OR8B4 In_Frame_Del p.E110_C111delinsG 0.38 TCGA-76-6657-01 11 58170350 58170350 T A OR5B3 Missense_Mutation p.D178V 0.29 deleterious_low_confidence(0) probably_damaging(0.995) TCGA-76-6657-01 11 59612964 59612964 G A GIF 5'UTR 0.41 TCGA-76-6657-01 12 109687832 109687832 G A ACACB Missense_Mutation p.V1905M 0.38 deleterious(0) possibly_damaging(0.584) TCGA-76-6657-01 12 120582480 120582480 G A GCN1L1 Missense_Mutation p.T1772I 0.40 benign(0.008) TCGA-76-6657-01 12 4708241 4708241 G A DYRK4 Missense_Mutation p.S203N 0.27 deleterious(0.03) benign(0.249) TCGA-76-6657-01 12 52647061 52647061 T C KRT7 3'Flank 0.36 TCGA-76-6657-01 12 85695206 85695206 C T ALX1 Nonsense_Mutation p.R312* 0.35 TCGA-76-6657-01 13 113834511 113834511 T A PCID2 Missense_Mutation p.Y328F 0.10 deleterious(0.02) possibly_damaging(0.747) TCGA-76-6657-01 13 46549530 46549530 G A ZC3H13 Missense_Mutation p.R786C 0.35 unknown(0) TCGA-76-6657-01 14 105622280 105622280 C T JAG2 Silent p.P174P 0.37 TCGA-76-6657-01 14 22134222 22134222 C T OR4E2 Missense_Mutation p.T309M 0.19 tolerated(0.14) benign(0) TCGA-76-6657-01 14 22475835 22475835 C T TRAV19 5'UTR 0.37 TCGA-76-6657-01 15 100230604 100230604 C G MEF2A Missense_Mutation p.P279A 0.38 tolerated(0.06) probably_damaging(0.981) TCGA-76-6657-01 15 54786821 54786821 G A UNC13C Missense_Mutation p.R1650Q 0.27 deleterious_low_confidence(0.04) benign(0.025) TCGA-76-6657-01 15 75092831 75092831 G A CSK Missense_Mutation p.D181N 0.15 tolerated(0.13) probably_damaging(0.973) TCGA-76-6657-01 15 85383056 85383056 C T ALPK3 Silent p.F384F 0.34 TCGA-76-6657-01 15 91341566 91341566 G A BLM Silent p.L1119L 0.31 TCGA-76-6657-01 16 20494409 20494409 G A ACSM2A Silent p.S513S 0.40 TCGA-76-6657-01 16 66432371 66432371 A C CDH5 Missense_Mutation p.I500L 0.21 deleterious(0) possibly_damaging(0.524) TCGA-76-6657-01 17 29556484 29556484 G A NF1 Splice_Site p.X950_splice 0.36 TCGA-76-6657-01 17 29683590 29683590 T - NF1 Frame_Shift_Del p.Y2577Mfs*47 0.26 TCGA-76-6657-01 17 29850996 29850997 AC - RAB11FIP4 Frame_Shift_Del p.Q374Afs*7 0.35 TCGA-76-6657-01 19 44012082 44012082 C T ETHE1 Intron 0.26 TCGA-76-6657-01 19 757476 757476 G A MISP Missense_Mutation p.R177Q 0.36 tolerated(0.59) benign(0.004) TCGA-76-6657-01 19 7763247 7763247 C T FCER2 Missense_Mutation p.R62Q 0.20 tolerated(1) benign(0.015) TCGA-76-6657-01 19 8183822 8183822 G A FBN3 Missense_Mutation p.P1099L 0.33 deleterious(0) possibly_damaging(0.734) TCGA-76-6657-01 1 110293381 110293381 G A EPS8L3 Silent p.S558S 0.24 TCGA-76-6657-01 1 117150591 117150591 T A IGSF3 Missense_Mutation p.N399Y 0.05 deleterious(0) probably_damaging(0.921) TCGA-76-6657-01 1 119427252 119427252 G A TBX15 3'UTR 0.38 TCGA-76-6657-01 1 152749094 152749094 C T LCE1F Missense_Mutation p.R83C 0.40 tolerated_low_confidence(0.2) unknown(0) TCGA-76-6657-01 1 152777963 152777963 C T LCE1C 5'UTR 0.28 TCGA-76-6657-01 1 158549258 158549258 G A OR10X1 Silent p.N144N 0.34 TCGA-76-6657-01 1 178427055 178427055 A T RASAL2 Silent p.G876G 0.39 TCGA-76-6657-01 1 248636975 248636975 C T OR2T3 Silent p.F108F 0.25 TCGA-76-6657-01 1 39763324 39763324 C G MACF1 Missense_Mutation p.F801L 0.43 benign(0.117) TCGA-76-6657-01 1 43812465 43812465 C T MPL Missense_Mutation p.R390C 0.37 deleterious(0) benign(0.326) TCGA-76-6657-01 1 6209438 6209438 C T CHD5 Silent p.Q343Q 0.54 TCGA-76-6657-01 20 31380568 31380568 C T DNMT3B Missense_Mutation p.T353M 0.36 tolerated(0.12) benign(0.276) TCGA-76-6657-01 20 60928193 60928193 C G LAMA5 Missense_Mutation p.A189P 0.14 probably_damaging(0.999) TCGA-76-6657-01 21 14982765 14982765 C T POTED Silent p.C72C 0.47 TCGA-76-6657-01 21 46117243 46117243 G A KRTAP10-12 Missense_Mutation p.A43T 0.49 tolerated(0.12) benign(0.022) TCGA-76-6657-01 22 21342326 21342326 A C LZTR1 Missense_Mutation p.N143T 0.28 deleterious(0) probably_damaging(1) TCGA-76-6657-01 22 37581479 37581479 G T C1QTNF6 Missense_Mutation p.A23D 0.09 tolerated_low_confidence(0.1) benign(0.016) TCGA-76-6657-01 2 165952115 165952115 A G SCN3A Missense_Mutation p.L1446S 0.28 deleterious(0) possibly_damaging(0.697) TCGA-76-6657-01 2 167151185 167151185 A T SCN9A Intron 0.34 TCGA-76-6657-01 2 170677785 170677785 T C METTL5 Splice_Site p.X75_splice 0.05 TCGA-76-6657-01 2 233404776 233404776 G A CHRNG Missense_Mutation p.A44T 0.42 tolerated(0.12) benign(0.123) TCGA-76-6657-01 2 48023188 48023190 GAA - MSH6 In_Frame_Del p.E207del 0.32 TCGA-76-6657-01 4 155507683 155507683 A T FGA Missense_Mutation p.S300T 0.34 tolerated_low_confidence(0.48) benign(0.153) TCGA-76-6657-01 4 184938294 184938294 C T STOX2 Missense_Mutation p.R880C 0.09 deleterious_low_confidence(0) probably_damaging(0.999) TCGA-76-6657-01 4 70455172 70455172 G A UGT2A1 Missense_Mutation p.T667M 0.34 tolerated(0.05) benign(0.149) TCGA-76-6657-01 5 13885213 13885213 G A DNAH5 Silent p.R956R 0.29 TCGA-76-6657-01 5 141049346 141049346 C T ARAP3 Missense_Mutation p.G761E 0.39 deleterious(0.02) benign(0.341) TCGA-76-6657-01 5 150920247 150920247 G A FAT2 Missense_Mutation p.R2974C 0.06 probably_damaging(1) TCGA-76-6657-01 5 67522740 67522741 - A PIK3R1 Frame_Shift_Ins p.I82Nfs*24 0.26 TCGA-76-6657-01 5 89992775 89992775 T C GPR98 Missense_Mutation p.I2656T 0.33 probably_damaging(0.954) TCGA-76-6657-01 6 112015863 112015863 T C FYN Missense_Mutation p.K363E 0.36 tolerated(0.07) probably_damaging(0.993) TCGA-76-6657-01 6 154831213 154831213 C T CNKSR3 Silent p.V12V 0.33 TCGA-76-6657-01 6 74073351 74073351 G A KHDC3L Missense_Mutation p.R141Q 0.34 tolerated(0.19) benign(0.301) TCGA-76-6657-01 7 142498925 142498925 G A TRBC2 Missense_Mutation p.A68T 0.17 tolerated(1) benign(0.001) TCGA-76-6657-01 7 56144570 56144570 C T SUMF2 Silent p.T212T 0.24 TCGA-76-6657-01 7 81611940 81611940 G A CACNA2D1 Missense_Mutation p.S633L 0.25 tolerated(0.66) benign(0.282) TCGA-76-6657-01 8 103340098 103340099 - A UBR5 Frame_Shift_Ins p.L451Ffs*7 0.21 TCGA-76-6657-01 8 104388028 104388028 C T CTHRC1 Silent p.A71A 0.28 TCGA-76-6657-01 8 144940918 144940918 G T EPPK1 Missense_Mutation p.S2168R 0.37 benign(0.001) TCGA-76-6657-01 X 71792500 71792500 C T HDAC8 Splice_Site p.X37_splice 0.67 TCGA-76-6660-01 10 124395540 124395540 A G DMBT1 Silent p.E2065E 0.37 TCGA-76-6660-01 10 50819867 50819867 G A SLC18A3 Missense_Mutation p.A361T 0.17 deleterious(0.01) probably_damaging(0.993) TCGA-76-6660-01 10 51465691 51465691 G A AGAP7 Silent p.S255S 0.70 TCGA-76-6660-01 10 89653782 89653782 A G PTEN Missense_Mutation p.Y27C 0.77 tolerated(0.05) benign(0.382) TCGA-76-6660-01 10 90428330 90428330 T A LIPF Missense_Mutation p.V90E 0.31 deleterious(0) probably_damaging(0.961) TCGA-76-6660-01 11 10536581 10536581 C T RNF141 Missense_Mutation p.R192H 0.30 tolerated(0.05) possibly_damaging(0.701) TCGA-76-6660-01 11 123471245 123471245 C G GRAMD1B Missense_Mutation p.L204V 0.47 deleterious(0.02) possibly_damaging(0.708) TCGA-76-6660-01 11 32421505 32421505 T G WT1 Silent p.R363R 0.35 TCGA-76-6660-01 11 62677224 62677224 C T CHRM1 Missense_Mutation p.G450D 0.08 tolerated_low_confidence(0.07) probably_damaging(0.931) TCGA-76-6660-01 11 63961718 63961718 C T STIP1 Nonsense_Mutation p.R93* 0.37 TCGA-76-6660-01 11 7083705 7083705 A G NLRP14 Silent p.R982R 0.43 TCGA-76-6660-01 12 104387178 104387178 C G GLT8D2 Missense_Mutation p.R291T 0.62 deleterious(0) probably_damaging(1) TCGA-76-6660-01 12 29630051 29630051 T C OVCH1 Missense_Mutation p.E454G 0.71 tolerated(0.3) benign(0.068) TCGA-76-6660-01 12 31944946 31944946 C T H3F3C Missense_Mutation p.R52H 0.26 deleterious_low_confidence(0.01) benign(0.028) TCGA-76-6660-01 12 51773383 51773383 C T GALNT6 Missense_Mutation p.M61I 0.05 deleterious_low_confidence(0.01) benign(0.003) TCGA-76-6660-01 12 55714592 55714592 C T OR6C1 Missense_Mutation p.S70L 0.62 deleterious_low_confidence(0.05) possibly_damaging(0.509) TCGA-76-6660-01 13 36686060 36686060 G A DCLK1 Silent p.A223A 0.44 TCGA-76-6660-01 13 36909291 36909291 T C SPG20 Missense_Mutation p.N226S 0.04 tolerated(1) benign(0.008) TCGA-76-6660-01 14 25043946 25043946 G A CTSG Missense_Mutation p.R92C 0.47 deleterious(0.04) benign(0.077) TCGA-76-6660-01 14 32560334 32560334 G A ARHGAP5 Silent p.K153K 0.35 TCGA-76-6660-01 14 52735336 52735336 G A PTGDR Silent p.A268A 0.12 TCGA-76-6660-01 15 21071313 21071313 G A POTEB2 Nonsense_Mutation p.R100* 0.16 TCGA-76-6660-01 15 43571424 43571424 G A TGM7 Missense_Mutation p.T577M 0.33 tolerated(0.21) benign(0.077) TCGA-76-6660-01 15 50226281 50226281 G T ATP8B4 Silent p.P462P 0.40 TCGA-76-6660-01 15 56207523 56207523 T G NEDD4 Missense_Mutation p.S503R 0.34 tolerated(0.09) benign(0.096) TCGA-76-6660-01 15 79748562 79748562 G A KIAA1024 Missense_Mutation p.V25I 0.43 tolerated(0.08) benign(0.039) TCGA-76-6660-01 15 84659966 84659966 G T ADAMTSL3 Missense_Mutation p.G1325C 0.37 deleterious(0) probably_damaging(0.999) TCGA-76-6660-01 16 53338029 53338037 TAAAGGTAT - CHD9 In_Frame_Del p.K2038_I2040del 0.43 TCGA-76-6660-01 16 88705001 88705001 G A IL17C 5'UTR 0.64 TCGA-76-6660-01 16 90160836 90160836 C T TUBB8P7 RNA 0.71 TCGA-76-6660-01 17 10322097 10322097 C A MYH8 Missense_Mutation p.V126F 0.11 deleterious(0.01) benign(0.197) TCGA-76-6660-01 17 39296555 39296555 C T KRTAP4-6 Missense_Mutation p.R62H 0.35 tolerated(0.13) unknown(0) TCGA-76-6660-01 17 48435599 48435599 T C XYLT2 Missense_Mutation p.L658P 0.36 deleterious(0) probably_damaging(0.912) TCGA-76-6660-01 17 56492699 56492699 T C RNF43 Silent p.G80G 0.39 TCGA-76-6660-01 17 62502217 62502217 G C DDX5 Missense_Mutation p.D7E 0.38 tolerated(0.14) benign(0.417) TCGA-76-6660-01 17 7578415 7578415 A C TP53 Missense_Mutation p.V172G 0.52 deleterious(0) probably_damaging(0.996) TCGA-76-6660-01 18 40554049 40554049 G T RIT2 Missense_Mutation p.T75N 0.33 deleterious(0) probably_damaging(0.991) TCGA-76-6660-01 18 60795928 60795929 AG - BCL2 Frame_Shift_Del p.L217Efs*38 0.41 TCGA-76-6660-01 18 6956660 6956660 A T LAMA1 Missense_Mutation p.L2690H 0.38 tolerated(0.15) possibly_damaging(0.592) TCGA-76-6660-01 19 10886491 10886491 G A DNM2 Silent p.R166R 0.25 TCGA-76-6660-01 19 11526753 11526753 G A RGL3 Missense_Mutation p.S166L 0.26 tolerated(0.19) benign(0.041) TCGA-76-6660-01 19 12126556 12126556 A - ZNF433 Frame_Shift_Del p.Y376Ifs*295 0.26 TCGA-76-6660-01 19 54254542 54254542 C T MIR522 RNA 0.47 TCGA-76-6660-01 19 57325278 57325278 G C PEG3 Missense_Mutation p.T1511R 0.34 deleterious(0.02) possibly_damaging(0.658) TCGA-76-6660-01 1 114380721 114380721 G A PTPN22 Missense_Mutation p.A434V 0.06 tolerated(0.14) benign(0.197) TCGA-76-6660-01 1 117142794 117142794 G A IGSF3 Missense_Mutation p.R620W 0.27 deleterious(0) probably_damaging(0.978) TCGA-76-6660-01 1 117690323 117690323 C A VTCN1 Missense_Mutation p.S269I 0.15 tolerated(0.39) benign(0.001) TCGA-76-6660-01 1 150325558 150325558 A T PRPF3 3'UTR 0.40 TCGA-76-6660-01 1 16260992 16260992 G A SPEN Missense_Mutation p.V2753I 0.46 benign(0.05) TCGA-76-6660-01 1 162829260 162829260 C A C1orf110 Missense_Mutation p.R59S 0.26 deleterious(0) benign(0.037) TCGA-76-6660-01 1 17026484 17026484 C A ESPNP RNA 0.27 TCGA-76-6660-01 1 202932844 202932844 T C CYB5R1 Missense_Mutation p.M191V 0.36 deleterious(0) probably_damaging(0.977) TCGA-76-6660-01 1 2125232 2125232 C T C1orf86 Missense_Mutation p.G106R 0.36 tolerated(0.19) benign(0.001) TCGA-76-6660-01 1 246078867 246078867 C A SMYD3 Nonsense_Mutation p.E260* 0.55 TCGA-76-6660-01 1 29189500 29189500 C T OPRD1 Missense_Mutation p.A275V 0.71 deleterious(0.05) benign(0.264) TCGA-76-6660-01 20 19981289 19981289 C T RIN2 Silent p.N848N 0.04 TCGA-76-6660-01 20 54963223 54963223 C T AURKA Missense_Mutation p.G11R 0.31 tolerated_low_confidence(0.31) benign(0.015) TCGA-76-6660-01 21 40883645 40883645 C T SH3BGR Silent p.A221A 0.34 TCGA-76-6660-01 22 18364014 18364014 G A MICAL3 Intron 0.44 TCGA-76-6660-01 22 26937392 26937392 G A TPST2 Missense_Mutation p.P69S 0.07 deleterious(0.01) probably_damaging(0.994) TCGA-76-6660-01 2 100065960 100065960 G C REV1 Missense_Mutation p.S63C 0.49 deleterious(0) probably_damaging(0.992) TCGA-76-6660-01 2 125530548 125530548 G A CNTNAP5 Silent p.S901S 0.42 TCGA-76-6660-01 2 132021658 132021658 G A POTEE Missense_Mutation p.R877H 0.24 tolerated_low_confidence(0.11) possibly_damaging(0.468) TCGA-76-6660-01 2 1426892 1426892 C T TPO Missense_Mutation p.T57M 0.37 deleterious(0) possibly_damaging(0.886) TCGA-76-6660-01 2 179458769 179458769 G A TTN Missense_Mutation p.R19451C 0.43 TCGA-76-6660-01 2 179720232 179720232 T - CCDC141 Frame_Shift_Del p.T968Pfs*6 0.34 TCGA-76-6660-01 2 190313200 190313200 C T WDR75 Missense_Mutation p.T61I 0.44 deleterious(0.02) probably_damaging(0.948) TCGA-76-6660-01 2 230683176 230683176 T C TRIP12 Silent p.Q453Q 0.44 TCGA-76-6660-01 3 132432101 132432101 G A NPHP3 Silent p.C329C 0.40 TCGA-76-6660-01 3 197431552 197431552 G A KIAA0226 Silent p.N108N 0.49 TCGA-76-6660-01 3 3076439 3076439 C T CNTN4 Missense_Mutation p.T636I 0.42 deleterious(0) probably_damaging(0.999) TCGA-76-6660-01 3 78683176 78683176 G A ROBO1 Silent p.D1130D 0.11 TCGA-76-6660-01 3 97499015 97499015 A T ARL6 Missense_Mutation p.N46Y 0.17 tolerated(0.19) benign(0.144) TCGA-76-6660-01 4 169845564 169845564 C T PALLD Nonsense_Mutation p.R1073* 0.42 TCGA-76-6660-01 4 1729779 1729779 C T TACC3 Missense_Mutation p.P217L 0.45 tolerated(0.21) unknown(0) TCGA-76-6660-01 4 20597371 20597371 C T SLIT2 Silent p.D1078D 0.39 TCGA-76-6660-01 5 110461398 110461398 G C WDR36 Missense_Mutation p.E871Q 0.51 tolerated(0.33) benign(0.082) TCGA-76-6660-01 5 177547670 177547670 C T N4BP3 Silent p.G274G 0.28 TCGA-76-6660-01 5 83402578 83402578 G T EDIL3 Missense_Mutation p.H180Q 0.06 tolerated(0.06) probably_damaging(0.954) TCGA-76-6660-01 6 135748441 135748441 T C AHI1 Silent p.E876E 0.68 TCGA-76-6660-01 6 166912027 166912027 C T RPS6KA2 Missense_Mutation p.S247N 0.58 deleterious(0) possibly_damaging(0.643) TCGA-76-6660-01 6 168226333 168226333 C T MLLT4 5'Flank 0.73 TCGA-76-6660-01 6 26385257 26385257 G A BTN2A2 Missense_Mutation p.V37M 0.58 tolerated(0.24) benign(0.105) TCGA-76-6660-01 6 80838915 80838915 T C BCKDHB Silent p.F104F 0.11 TCGA-76-6660-01 7 100683326 100683326 A G MUC17 Missense_Mutation p.S2877G 0.16 unknown(0) TCGA-76-6660-01 7 107415299 107415299 G A SLC26A3 Nonsense_Mutation p.R566* 0.37 TCGA-76-6660-01 7 113558926 113558926 A C PPP1R3A Missense_Mutation p.S42R 0.08 tolerated(0.57) benign(0.029) TCGA-76-6660-01 7 114299728 114299728 G T FOXP2 Missense_Mutation p.K574N 0.40 deleterious(0) probably_damaging(0.998) TCGA-76-6660-01 7 128034510 128034510 C T IMPDH1 Missense_Mutation p.R565Q 0.09 tolerated(0.09) benign(0.311) TCGA-76-6660-01 7 142197822 142197822 A C TRBV11-2 RNA 0.26 TCGA-76-6660-01 7 50358674 50358674 G T IKZF1 Missense_Mutation p.G6V 0.17 tolerated(0.07) benign(0.197) TCGA-76-6660-01 7 55912359 55912359 G A SEPT14 Silent p.N76N 0.32 TCGA-76-6660-01 7 73609098 73609098 G A EIF4H Missense_Mutation p.R166K 0.15 tolerated(0.43) benign(0.104) TCGA-76-6660-01 7 93113265 93113265 G A CALCR Intron 0.30 TCGA-76-6660-01 8 113256734 113256734 C G CSMD3 Missense_Mutation p.G3431R 0.39 deleterious(0) probably_damaging(0.992) TCGA-76-6660-01 8 142367058 142367058 G A GPR20 Silent p.S322S 0.51 TCGA-76-6660-01 8 73849104 73849104 A T KCNB2 Missense_Mutation p.N505I 0.41 tolerated(0.15) possibly_damaging(0.544) TCGA-76-6660-01 9 115760403 115760403 C T ZNF883 RNA 0.60 TCGA-76-6660-01 9 115760511 115760511 G A ZNF883 RNA 0.54 TCGA-76-6660-01 9 116038922 116038922 G A PRPF4 Missense_Mutation p.R42H 0.59 deleterious(0.03) benign(0.011) TCGA-76-6660-01 9 131482499 131482499 G A PKN3 Silent p.P798P 0.26 TCGA-76-6660-01 9 138662162 138662162 G A KCNT1 Silent p.P546P 0.66 TCGA-76-6660-01 9 139571950 139571950 G A AGPAT2 Missense_Mutation p.R81W 0.05 tolerated(0.17) probably_damaging(0.932) TCGA-76-6660-01 9 74319626 74319626 G A TMEM2 Nonsense_Mutation p.Q1027* 0.54 TCGA-76-6660-01 X 10058926 10058926 C T WWC3 Missense_Mutation p.R165W 0.90 deleterious(0.01) benign(0.033) TCGA-76-6660-01 X 130409145 130409145 C T IGSF1 Silent p.K1105K 0.91 TCGA-76-6660-01 X 140995944 140995944 T C MAGEC1 Silent p.F918F 0.89 TCGA-76-6661-01 10 87628864 87628864 A G GRID1 Missense_Mutation p.F285S 0.65 deleterious(0.03) possibly_damaging(0.751) TCGA-76-6661-01 10 89720664 89720664 A C PTEN Missense_Mutation p.H272P 0.65 deleterious(0.01) probably_damaging(0.961) TCGA-76-6661-01 11 113629276 113629276 C A ZW10 Missense_Mutation p.G245C 0.08 deleterious(0) probably_damaging(0.964) TCGA-76-6661-01 11 119044727 119044727 G A NLRX1 Missense_Mutation p.G257R 0.41 tolerated(0.08) probably_damaging(0.932) TCGA-76-6661-01 11 30033088 30033088 C A KCNA4 Missense_Mutation p.V380L 0.35 deleterious(0.01) benign(0.153) TCGA-76-6661-01 11 59211187 59211187 C T OR5A1 Silent p.C182C 0.36 TCGA-76-6661-01 11 60687316 60687316 G C TMEM109 Missense_Mutation p.V51L 0.32 tolerated(0.08) benign(0.003) TCGA-76-6661-01 11 66102539 66102539 C T RIN1 Missense_Mutation p.S244N 0.37 deleterious(0) probably_damaging(0.993) TCGA-76-6661-01 12 402172 402172 A C KDM5A Nonsense_Mutation p.L1540* 0.37 TCGA-76-6661-01 12 54396220 54396220 C T HOXC9 Missense_Mutation p.P182L 0.34 deleterious(0.02) probably_damaging(0.994) TCGA-76-6661-01 12 57581220 57581220 G A LRP1 Missense_Mutation p.V2338I 0.43 benign(0.435) TCGA-76-6661-01 12 72666636 72666636 A G TRHDE Silent p.R26R 0.39 TCGA-76-6661-01 12 7639177 7639177 T A CD163 Missense_Mutation p.E792D 0.41 deleterious(0) probably_damaging(0.999) TCGA-76-6661-01 14 64882182 64882182 A G MTHFD1 Missense_Mutation p.N116S 0.34 tolerated(0.35) benign(0.026) TCGA-76-6661-01 16 10527480 10527480 G C ATF7IP2 Missense_Mutation p.E312Q 0.37 deleterious(0.05) benign(0.254) TCGA-76-6661-01 16 22137566 22137566 C T VWA3A Missense_Mutation p.R534W 0.27 deleterious(0) probably_damaging(0.999) TCGA-76-6661-01 16 81942086 81942086 G A PLCG2 Silent p.T541T 0.43 TCGA-76-6661-01 17 42284949 42284949 T C UBTF Missense_Mutation p.D681G 0.49 tolerated(0.34) benign(0) TCGA-76-6661-01 18 28671015 28671015 A C DSC2 Silent p.G150G 0.49 TCGA-76-6661-01 18 29046498 29046498 A T DSG3 Missense_Mutation p.T473S 0.04 tolerated(0.58) possibly_damaging(0.695) TCGA-76-6661-01 19 17937673 17937673 C T JAK3 Missense_Mutation p.R1085Q 0.28 deleterious(0) probably_damaging(1) TCGA-76-6661-01 19 39665625 39665625 T C PAK4 Missense_Mutation p.Y385H 0.30 tolerated(0.11) possibly_damaging(0.555) TCGA-76-6661-01 19 4171163 4171163 C T CREB3L3 Silent p.T322T 0.23 TCGA-76-6661-01 19 58805490 58805490 G A ZNF8 Missense_Mutation p.A106T 0.23 tolerated(0.55) benign(0.002) TCGA-76-6661-01 19 8616651 8616651 G A MYO1F Silent p.D248D 0.26 TCGA-76-6661-01 1 12779677 12779677 C T AADACL3 Silent p.G66G 0.60 TCGA-76-6661-01 1 169698648 169698648 G A SELE Silent p.N294N 0.38 TCGA-76-6661-01 1 215931985 215931985 T C USH2A Missense_Mutation p.I3781V 0.39 benign(0.002) TCGA-76-6661-01 1 248525822 248525822 A T OR2T4 Missense_Mutation p.T314S 0.19 deleterious(0.01) probably_damaging(0.954) TCGA-76-6661-01 1 40235523 40235523 C T OXCT2 Missense_Mutation p.E469K 0.35 deleterious(0) probably_damaging(0.99) TCGA-76-6661-01 1 53930361 53930361 C T DMRTB1 Missense_Mutation p.P268S 0.22 tolerated(0.16) benign(0.197) TCGA-76-6661-01 20 43118147 43118147 C T TTPAL Nonsense_Mutation p.R332* 0.29 TCGA-76-6661-01 21 38639657 38639657 G A DSCR3 5'UTR 0.55 TCGA-76-6661-01 21 43162031 43162031 A T RIPK4 Missense_Mutation p.L441Q 0.32 deleterious(0.03) probably_damaging(0.986) TCGA-76-6661-01 22 17443521 17443521 C T GAB4 3'UTR 0.47 TCGA-76-6661-01 2 179594237 179594237 C T TTN Missense_Mutation p.V6216M 0.07 TCGA-76-6661-01 2 209153464 209153464 C T PIKFYVE Missense_Mutation p.P278L 0.34 tolerated(0.14) benign(0.357) TCGA-76-6661-01 2 227942664 227942664 C T COL4A4 Missense_Mutation p.G645R 0.33 probably_damaging(0.995) TCGA-76-6661-01 2 227942679 227942679 C T COL4A4 Missense_Mutation p.E640K 0.33 benign(0.169) TCGA-76-6661-01 2 227942699 227942699 C T COL4A4 Missense_Mutation p.G633E 0.28 probably_damaging(0.993) TCGA-76-6661-01 3 182871533 182871533 G A LAMP3 Silent p.N232N 0.05 TCGA-76-6661-01 3 184295702 184295702 G A EPHB3 Silent p.Q552Q 0.47 TCGA-76-6661-01 3 184870498 184870498 G A C3orf70 Silent p.C38C 0.15 TCGA-76-6661-01 3 97868657 97868657 G A OR5H14 Missense_Mutation p.R143Q 0.45 tolerated(1) benign(0.004) TCGA-76-6661-01 4 39462478 39462478 C A LIAS Silent p.L38L 0.37 TCGA-76-6661-01 5 127674667 127674667 C A FBN2 Nonsense_Mutation p.E1144* 0.34 TCGA-76-6661-01 5 128862027 128862027 C T ADAMTS19 Nonsense_Mutation p.R316* 0.48 TCGA-76-6661-01 5 140203028 140203028 C T PCDHA5 Silent p.D556D 0.36 TCGA-76-6661-01 5 140515027 140515027 C T PCDHB5 Missense_Mutation p.A4V 0.45 tolerated_low_confidence(0.15) benign(0.012) TCGA-76-6661-01 5 176941751 176941751 G C DDX41 Missense_Mutation p.L296V 0.37 deleterious(0.02) possibly_damaging(0.802) TCGA-76-6661-01 5 40835340 40835340 T A RPL37 5'UTR 0.43 TCGA-76-6661-01 6 111288823 111288823 G T GTF3C6 Missense_Mutation p.D158Y 0.40 deleterious(0) possibly_damaging(0.832) TCGA-76-6661-01 6 142409496 142409496 G A NMBR Silent p.D100D 0.35 TCGA-76-6661-01 7 142499003 142499003 T A TRBC2 Missense_Mutation p.F94I 0.11 deleterious(0) probably_damaging(0.999) TCGA-76-6661-01 7 142630680 142630680 T A TRPV5 5'UTR 0.33 TCGA-76-6661-01 7 143956506 143956506 G A OR2A7 Silent p.Y72Y 0.13 TCGA-76-6661-01 7 150934492 150934492 C G CHPF2 Silent p.P348P 0.26 TCGA-76-6661-01 7 43351508 43351508 C T HECW1 Silent p.H58H 0.31 TCGA-76-6661-01 7 55223543 55223543 C T EGFR Missense_Mutation p.H304Y 0.06 tolerated(1) benign(0.049) TCGA-76-6661-01 7 55223567 55223567 G T EGFR Missense_Mutation p.G312W 0.03 deleterious(0) possibly_damaging(0.86) TCGA-76-6661-01 7 72849307 72849307 G A FZD9 Missense_Mutation p.G324S 0.35 tolerated(0.12) benign(0.302) TCGA-76-6661-01 7 99261679 99261679 T G CYP3A5 Missense_Mutation p.N237T 0.24 deleterious(0) possibly_damaging(0.626) TCGA-76-6661-01 8 10469501 10469501 G A RP1L1 Nonsense_Mutation p.R703* 0.31 TCGA-76-6661-01 8 11406564 11406564 G A BLK Missense_Mutation p.V101I 0.11 tolerated(0.27) benign(0.003) TCGA-76-6661-01 8 145095802 145095802 G A SPATC1 Missense_Mutation p.R367Q 0.33 tolerated(0.11) possibly_damaging(0.889) TCGA-76-6661-01 9 130689473 130689473 G A PIP5KL1 Silent p.V203V 0.28 TCGA-76-6661-01 9 6329066 6329066 G A TPD52L3 3'UTR 0.25 TCGA-76-6661-01 X 140983301 140983301 G A MAGEC3 Missense_Mutation p.R360H 0.76 tolerated(0.3) benign(0.008) TCGA-76-6661-01 X 153175809 153175809 C T ARHGAP4 Missense_Mutation p.V698M 0.80 deleterious(0.04) probably_damaging(0.977) TCGA-76-6661-01 Y 4966872 4966872 C T PCDH11Y Missense_Mutation p.T418M 0.76 deleterious(0.04) benign(0.094) TCGA-76-6662-01 10 122649467 122649467 T C WDR11 Silent p.N763N 0.33 TCGA-76-6662-01 10 89717672 89717672 C T PTEN Nonsense_Mutation p.R233* 0.39 TCGA-76-6662-01 10 91498052 91498052 C A KIF20B Missense_Mutation p.L1112I 0.26 deleterious(0.03) probably_damaging(0.961) TCGA-76-6662-01 11 55587178 55587178 C G OR5D18 Missense_Mutation p.Q25E 0.25 deleterious(0.01) benign(0.033) TCGA-76-6662-01 11 95825767 95825767 C T MAML2 Silent p.G476G 0.35 TCGA-76-6662-01 12 48135454 48135454 G T RAPGEF3 Intron 0.47 TCGA-76-6662-01 13 48919241 48919244 AAAG - RB1 Frame_Shift_Del p.E137Lfs*15 0.32 TCGA-76-6662-01 14 23353987 23353987 C T REM2 Missense_Mutation p.P70S 0.24 deleterious(0) probably_damaging(0.998) TCGA-76-6662-01 15 40590478 40590478 G A PLCB2 Silent p.D367D 0.22 TCGA-76-6662-01 15 99456497 99456497 G T IGF1R Missense_Mutation p.R605L 0.30 tolerated(0.05) benign(0.1) TCGA-76-6662-01 16 69760486 69760487 TT - NQO1 5'UTR 0.38 TCGA-76-6662-01 17 20407355 20407355 C T RP11-434D2.7 3'Flank 0.14 TCGA-76-6662-01 17 21731602 21731602 G T UBBP4 Missense_Mutation p.R226M 0.30 tolerated(0.08) possibly_damaging(0.85) TCGA-76-6662-01 17 47297534 47297534 C T ABI3 Silent p.S216S 0.22 TCGA-76-6662-01 17 7578518 7578518 C T TP53 Missense_Mutation p.A138T 0.29 deleterious(0) probably_damaging(0.979) TCGA-76-6662-01 17 76459049 76459049 G A DNAH17 Silent p.P3003P 0.20 TCGA-76-6662-01 17 80858560 80858560 G A TBCD Silent p.Q561Q 0.26 TCGA-76-6662-01 19 10395175 10395175 C T ICAM1 Missense_Mutation p.T341M 0.25 tolerated(0.17) benign(0.239) TCGA-76-6662-01 19 35523525 35523525 G A SCN1B Missense_Mutation p.R45H 0.08 deleterious(0.01) possibly_damaging(0.817) TCGA-76-6662-01 19 41063199 41063199 C T SPTBN4 Missense_Mutation p.R1854W 0.16 deleterious(0) probably_damaging(0.978) TCGA-76-6662-01 19 42525473 42525473 C A GRIK5 Silent p.T617T 0.12 TCGA-76-6662-01 19 51466671 51466671 C T KLK6 Missense_Mutation p.R111H 0.43 tolerated(0.12) benign(0.016) TCGA-76-6662-01 19 54822924 54822924 C T LILRA5 Missense_Mutation p.V158M 0.26 tolerated(0.06) possibly_damaging(0.458) TCGA-76-6662-01 1 104116388 104116388 G A AMY2B Missense_Mutation p.R191H 0.07 deleterious(0.01) benign(0.117) TCGA-76-6662-01 1 152080354 152080354 C T TCHH Missense_Mutation p.R1780H 0.19 unknown(0) TCGA-76-6662-01 1 248224733 248224733 C A OR2L3 Nonsense_Mutation p.Y250* 0.23 TCGA-76-6662-01 2 179395245 179395245 C A TTN Missense_Mutation p.G35366V 0.26 TCGA-76-6662-01 2 179485027 179485027 G A TTN Silent p.D15407D 0.23 TCGA-76-6662-01 3 142567280 142567280 C T PCOLCE2 Missense_Mutation p.R76Q 0.20 deleterious(0.02) possibly_damaging(0.499) TCGA-76-6662-01 3 153840688 153840688 G C ARHGEF26 Missense_Mutation p.D303H 0.41 deleterious(0) possibly_damaging(0.832) TCGA-76-6662-01 4 164393684 164393684 G A TKTL2 Silent p.F401F 0.12 TCGA-76-6662-01 4 183714569 183714569 T C TENM3 Silent p.F2248F 0.28 TCGA-76-6662-01 4 69817091 69817091 A G UGT2A3 Missense_Mutation p.Y130H 0.14 tolerated(0.49) benign(0.071) TCGA-76-6662-01 4 79503370 79503370 T A ANXA3 Missense_Mutation p.F80I 0.22 deleterious(0.01) possibly_damaging(0.652) TCGA-76-6662-01 5 171488225 171488225 C T STK10 Missense_Mutation p.M710I 0.18 deleterious(0.03) possibly_damaging(0.869) TCGA-76-6662-01 5 177059197 177059197 G T RP11-1277A3.2 Intron 0.17 TCGA-76-6662-01 5 67589590 67589591 - TAT PIK3R1 In_Frame_Ins p.Y452dup 0.29 TCGA-76-6662-01 5 89953946 89953946 G A GPR98 Missense_Mutation p.E1535K 0.23 possibly_damaging(0.905) TCGA-76-6662-01 6 150290460 150290460 T G ULBP1 Missense_Mutation p.F197V 0.28 deleterious(0) possibly_damaging(0.788) TCGA-76-6662-01 6 151152480 151152481 - T PLEKHG1 Frame_Shift_Ins p.G746Rfs*11 0.14 TCGA-76-6662-01 6 168443281 168443281 G A KIF25 Silent p.A290A 0.31 TCGA-76-6662-01 6 76715225 76715225 G A IMPG1 Missense_Mutation p.T305M 0.26 tolerated(0.64) benign(0.023) TCGA-76-6662-01 7 100364654 100364654 C T ZAN Missense_Mutation p.S1545L 0.11 unknown(0) TCGA-76-6662-01 7 150069247 150069247 A G REPIN1 Missense_Mutation p.N363S 0.17 tolerated(0.1) probably_damaging(0.995) TCGA-76-6662-01 7 93516588 93516588 G A TFPI2 Missense_Mutation p.R206C 0.11 deleterious(0.01) probably_damaging(0.965) TCGA-76-6662-01 8 104064965 104064965 A C ATP6V1C1 Missense_Mutation p.T130P 0.28 deleterious(0.03) benign(0.055) TCGA-76-6662-01 9 137309042 137309042 G T RXRA Nonsense_Mutation p.E217* 0.17 TCGA-76-6662-01 9 88576949 88576950 TC - NAA35 Frame_Shift_Del p.S124Tfs*13 0.29 TCGA-76-6663-01 10 102247513 102247513 G T SEC31B Silent p.R1134R 0.14 TCGA-76-6663-01 11 18955702 18955702 C T MRGPRX1 Silent p.P210P 0.16 TCGA-76-6663-01 11 65270600 65270600 T C MALAT1 RNA 0.21 TCGA-76-6663-01 12 100433500 100433500 G A UHRF1BP1L Silent p.T1383T 0.28 TCGA-76-6663-01 12 124298408 124298408 A C DNAH10 Missense_Mutation p.R1125S 0.09 benign(0.071) TCGA-76-6663-01 12 18435195 18435195 A G PIK3C2G Silent p.E60E 0.36 TCGA-76-6663-01 12 57864141 57864141 G A GLI1 Missense_Mutation p.E540K 0.27 deleterious(0.01) benign(0.004) TCGA-76-6663-01 12 72667155 72667155 G A TRHDE Silent p.A199A 0.09 TCGA-76-6663-01 13 49039399 49039399 C A RB1 Nonsense_Mutation p.S795* 0.37 TCGA-76-6663-01 15 100996164 100996164 C A CERS3 Missense_Mutation p.L311F 0.24 deleterious(0) probably_damaging(1) TCGA-76-6663-01 15 49030645 49030645 G A CEP152 Missense_Mutation p.T1645M 0.04 tolerated(0.25) benign(0.004) TCGA-76-6663-01 15 81440878 81440878 G A C15orf26 3'UTR 0.23 TCGA-76-6663-01 16 21216830 21216830 C T ZP2 Missense_Mutation p.A202T 0.26 deleterious(0) probably_damaging(0.95) TCGA-76-6663-01 16 29990328 29990328 C T TAOK2 Missense_Mutation p.A129V 0.19 deleterious(0) possibly_damaging(0.617) TCGA-76-6663-01 16 70916649 70916649 G T HYDIN Missense_Mutation p.R3377S 0.30 benign(0.006) TCGA-76-6663-01 17 17163668 17163668 C A COPS3 Missense_Mutation p.V295L 0.29 deleterious(0.02) probably_damaging(0.92) TCGA-76-6663-01 17 29497003 29497003 C T NF1 Nonsense_Mutation p.R192* 0.23 TCGA-76-6663-01 17 34432024 34432024 G A CCL4 Silent p.Q60Q 0.07 TCGA-76-6663-01 17 61995751 61995751 G A GH1 Silent p.R42R 0.28 TCGA-76-6663-01 17 7577538 7577538 C A TP53 Missense_Mutation p.R248L 0.10 deleterious(0) probably_damaging(1) TCGA-76-6663-01 18 55143729 55143729 G A ONECUT2 Missense_Mutation p.R430H 0.26 deleterious(0) possibly_damaging(0.61) TCGA-76-6663-01 18 7009321 7009321 C T LAMA1 Silent p.T1306T 0.24 TCGA-76-6663-01 19 10158069 10158069 G A C3P1 RNA 0.22 TCGA-76-6663-01 19 31039823 31039823 C T ZNF536 Silent p.H1099H 0.22 TCGA-76-6663-01 19 35232341 35232341 G A ZNF181 Missense_Mutation p.R352H 0.28 tolerated(0.14) benign(0.007) TCGA-76-6663-01 19 3779708 3779708 G A MATK Missense_Mutation p.T278M 0.19 deleterious(0) probably_damaging(0.982) TCGA-76-6663-01 19 49937876 49937876 G A SLC17A7 Missense_Mutation p.A207V 0.18 deleterious(0.03) benign(0.031) TCGA-76-6663-01 19 6495224 6495224 G A TUBB4A Missense_Mutation p.T429M 0.23 deleterious_low_confidence(0.03) unknown(0) TCGA-76-6663-01 1 158651339 158651339 A G SPTA1 Missense_Mutation p.I170T 0.28 deleterious(0.03) benign(0.113) TCGA-76-6663-01 1 214575057 214575057 C T PTPN14 Missense_Mutation p.G214R 0.19 deleterious(0) probably_damaging(1) TCGA-76-6663-01 1 232619633 232619633 G A SIPA1L2 Missense_Mutation p.T629M 0.24 tolerated(0.16) benign(0.14) TCGA-76-6663-01 1 248344248 248344248 T A OR2M2 Missense_Mutation p.L321M 0.29 tolerated_low_confidence(0.08) unknown(0) TCGA-76-6663-01 1 26883501 26883501 C T RPS6KA1 Missense_Mutation p.R341C 0.30 deleterious(0) probably_damaging(0.98) TCGA-76-6663-01 1 35656550 35656550 G - SFPQ Frame_Shift_Del p.T355Nfs*3 0.13 TCGA-76-6663-01 1 43201615 43201615 G A CLDN19 Missense_Mutation p.P187L 0.38 deleterious(0) benign(0.11) TCGA-76-6663-01 1 86952277 86952277 G A CLCA1 Silent p.G341G 0.10 TCGA-76-6663-01 1 87045055 87045055 C T CLCA4 Missense_Mutation p.P714L 0.25 deleterious(0.02) benign(0.081) TCGA-76-6663-01 20 43034798 43034798 C T HNF4A Silent p.Y72Y 0.30 TCGA-76-6663-01 20 43852035 43852035 G A SEMG2 3'UTR 0.32 TCGA-76-6663-01 21 43716431 43716431 G A ABCG1 Missense_Mutation p.G656R 0.28 tolerated(0.34) possibly_damaging(0.454) TCGA-76-6663-01 22 50617533 50617533 G A PANX2 Missense_Mutation p.A621T 0.31 deleterious_low_confidence(0.02) benign(0.062) TCGA-76-6663-01 2 1652977 1652977 A C PXDN Missense_Mutation p.S859A 0.23 deleterious(0.01) benign(0.314) TCGA-76-6663-01 2 179496982 179496982 C T TTN Missense_Mutation p.E14547K 0.24 TCGA-76-6663-01 2 179497281 179497281 C T TTN Silent p.K14484K 0.27 TCGA-76-6663-01 2 179647563 179647563 C T TTN Missense_Mutation p.V1024I 0.29 TCGA-76-6663-01 2 192278803 192278803 T C MYO1B Missense_Mutation p.L968P 0.30 deleterious(0) probably_damaging(0.974) TCGA-76-6663-01 3 1189641 1189641 G C CNTN6 5'UTR 0.30 TCGA-76-6663-01 3 96945145 96945145 C A EPHA6 Missense_Mutation p.N384K 0.27 tolerated(0.1) possibly_damaging(0.758) TCGA-76-6663-01 4 70504993 70504993 T A UGT2A2 Missense_Mutation p.K122N 0.17 tolerated(0.25) benign(0.005) TCGA-76-6663-01 5 140249736 140249736 G A PCDHA11 Missense_Mutation p.A350T 0.29 tolerated_low_confidence(1) benign(0.001) TCGA-76-6663-01 5 140503426 140503426 G A PCDHB4 Missense_Mutation p.V616M 0.32 deleterious_low_confidence(0) possibly_damaging(0.719) TCGA-76-6663-01 5 149504343 149504343 T A PDGFRB Missense_Mutation p.H620L 0.12 tolerated(0.1) possibly_damaging(0.475) TCGA-76-6663-01 5 174152030 174152030 C T MSX2 Missense_Mutation p.S123L 0.10 tolerated(0.05) benign(0.269) TCGA-76-6663-01 5 45262329 45262329 C T HCN1 Silent p.S789S 0.22 TCGA-76-6663-01 5 89986756 89986756 C T GPR98 Silent p.G2283G 0.28 TCGA-76-6663-01 6 112575061 112575061 G T LAMA4 Intron 0.39 TCGA-76-6663-01 6 117113591 117113591 G T GPRC6A Missense_Mutation p.P832H 0.22 deleterious(0) probably_damaging(1) TCGA-76-6663-01 6 37438827 37438827 G A CMTR1 Silent p.A512A 0.23 TCGA-76-6663-01 6 6174842 6174842 G A F13A1 Missense_Mutation p.T573M 0.28 deleterious(0.01) benign(0.414) TCGA-76-6663-01 6 84302667 84302667 G T SNAP91 Missense_Mutation p.S615Y 0.23 deleterious(0.02) probably_damaging(0.987) TCGA-76-6663-01 7 144068311 144068311 G T ARHGEF5 Missense_Mutation p.V1197L 0.09 deleterious(0.01) probably_damaging(0.988) TCGA-76-6663-01 7 1538054 1538054 C T INTS1 Silent p.A473A 0.25 TCGA-76-6663-01 8 95683852 95683852 G A ESRP1 Missense_Mutation p.A469T 0.25 tolerated(0.61) benign(0.006) TCGA-76-6663-01 9 107331658 107331658 C T OR13C8 Silent p.D70D 0.09 TCGA-76-6663-01 9 16435990 16435990 G A BNC2 Silent p.G734G 0.58 TCGA-76-6663-01 9 27948963 27948963 C A LINGO2 Silent p.G569G 0.40 TCGA-76-6663-01 9 96408031 96408031 G A PHF2 Silent p.P140P 0.33 TCGA-76-6663-01 X 106066520 106066521 AG - TBC1D8B Frame_Shift_Del p.S219Yfs*19 0.32 TCGA-76-6663-01 X 12712508 12712508 G A FRMPD4 Missense_Mutation p.V290I 0.29 tolerated(0.1) possibly_damaging(0.701) TCGA-76-6663-01 X 134428042 134428042 C T ZNF75D Missense_Mutation p.D9N 0.26 tolerated(0.52) possibly_damaging(0.811) TCGA-76-6663-01 X 153069697 153069697 C G PDZD4 Missense_Mutation p.G474A 0.29 tolerated(0.64) probably_damaging(0.999) TCGA-76-6663-01 X 3241682 3241682 G A MXRA5 Missense_Mutation p.R682C 0.09 deleterious(0.02) benign(0.031) TCGA-76-6663-01 X 70341522 70341523 TA - MED12 Frame_Shift_Del p.S321Cfs*18 0.08 TCGA-76-6663-01 X 70824283 70824283 C T ACRC Missense_Mutation p.P386S 0.14 unknown(0) TCGA-76-6664-01 10 127677259 127677259 C T FANK1 Intron 0.44 TCGA-76-6664-01 10 32635859 32635860 - A EPC1 5'UTR 0.29 TCGA-76-6664-01 10 89692768 89692768 A C PTEN Splice_Site p.X85_splice 0.41 TCGA-76-6664-01 11 101762058 101762058 T A ANGPTL5 Missense_Mutation p.K373N 0.34 deleterious(0) probably_damaging(0.975) TCGA-76-6664-01 11 102663372 102663372 C T MMP1 Missense_Mutation p.E333K 0.26 deleterious(0) probably_damaging(0.962) TCGA-76-6664-01 11 82443599 82443599 C T FAM181B Silent p.V391V 0.39 TCGA-76-6664-01 11 89073229 89073229 A T NOX4 Splice_Site p.X482_splice 0.29 TCGA-76-6664-01 12 30809654 30809654 G A IPO8 Missense_Mutation p.R638W 0.56 deleterious(0) possibly_damaging(0.453) TCGA-76-6664-01 13 33685935 33685935 C A STARD13 Nonsense_Mutation p.E863* 0.31 TCGA-76-6664-01 13 52857456 52857456 T G RP11-248G5.8 RNA 0.23 TCGA-76-6664-01 13 99337143 99337143 C T SLC15A1 Silent p.A654A 0.35 TCGA-76-6664-01 14 105622189 105622189 C T JAG2 Missense_Mutation p.A205T 0.26 tolerated(1) benign(0.015) TCGA-76-6664-01 14 94419793 94419793 G A ASB2 Missense_Mutation p.T180M 0.43 deleterious(0.01) probably_damaging(0.982) TCGA-76-6664-01 15 35193048 35193048 A G AQR Missense_Mutation p.I673T 0.28 deleterious(0) probably_damaging(0.985) TCGA-76-6664-01 15 39879564 39879564 C T THBS1 Silent p.D379D 0.32 TCGA-76-6664-01 16 10997663 10997663 G A CIITA Missense_Mutation p.R283Q 0.06 tolerated(0.08) benign(0.133) TCGA-76-6664-01 16 1537647 1537647 G A PTX4 Missense_Mutation p.R151C 0.28 tolerated(0.06) possibly_damaging(0.711) TCGA-76-6664-01 16 23718095 23718095 C T ERN2 Missense_Mutation p.R204H 0.28 tolerated(0.35) benign(0.024) TCGA-76-6664-01 16 315018 315018 G A ITFG3 Silent p.A552A 0.35 TCGA-76-6664-01 17 10398535 10398535 C G MYH1 Missense_Mutation p.E1757Q 0.29 deleterious(0) possibly_damaging(0.529) TCGA-76-6664-01 17 37607390 37607390 G A MED1 5'UTR 0.06 TCGA-76-6664-01 17 75471718 75471719 GT - SEPT9 Intron 0.24 TCGA-76-6664-01 17 7577539 7577539 G A TP53 Missense_Mutation p.R248W 0.35 deleterious(0) probably_damaging(1) TCGA-76-6664-01 19 14071180 14071180 G C DCAF15 Silent p.L536L 0.29 TCGA-76-6664-01 19 2933412 2933412 C T ZNF77 3'UTR 0.26 TCGA-76-6664-01 19 313632 313632 C T MIER2 Missense_Mutation p.E223K 0.17 deleterious(0.01) possibly_damaging(0.541) TCGA-76-6664-01 19 6495601 6495601 G A TUBB4A Silent p.C303C 0.29 TCGA-76-6664-01 19 9089511 9089511 G A MUC16 Silent p.A768A 0.22 TCGA-76-6664-01 1 113255057 113255057 C T PPM1J Missense_Mutation p.R251Q 0.25 tolerated(0.15) benign(0.017) TCGA-76-6664-01 1 12887475 12887475 G T PRAMEF11 Missense_Mutation p.L128I 0.34 tolerated(0.58) possibly_damaging(0.447) TCGA-76-6664-01 1 44446914 44446914 G A B4GALT2 Missense_Mutation p.V57I 0.38 tolerated(0.16) benign(0.089) TCGA-76-6664-01 20 21367621 21367621 C A XRN2 Silent p.R922R 0.30 TCGA-76-6664-01 20 44639885 44639885 C T MMP9 Silent p.D251D 0.28 TCGA-76-6664-01 20 47639713 47639713 G A ARFGEF2 Missense_Mutation p.A1584T 0.30 deleterious(0.04) possibly_damaging(0.481) TCGA-76-6664-01 21 19642347 19642347 C T TMPRSS15 Missense_Mutation p.R1000H 0.26 tolerated(0.06) benign(0.167) TCGA-76-6664-01 22 21332217 21332217 A T AIFM3 Missense_Mutation p.D467V 0.25 deleterious(0) probably_damaging(0.998) TCGA-76-6664-01 2 118587017 118587017 C A DDX18 Missense_Mutation p.F615L 0.32 deleterious(0.05) benign(0.045) TCGA-76-6664-01 2 127818185 127818185 T C BIN1 Intron 0.26 TCGA-76-6664-01 2 26950539 26950539 C T KCNK3 Silent p.Y96Y 0.34 TCGA-76-6664-01 2 99204078 99204078 G A INPP4A 3'UTR 0.40 TCGA-76-6664-01 3 197616555 197616555 G A IQCG Missense_Mutation p.R410W 0.37 deleterious(0) probably_damaging(1) TCGA-76-6664-01 3 49946367 49946367 G C MON1A 3'UTR 0.36 TCGA-76-6664-01 3 69097485 69097485 C T TMF1 Missense_Mutation p.R124Q 0.28 deleterious_low_confidence(0.01) benign(0.087) TCGA-76-6664-01 4 70620965 70620965 A G SULT1B1 5'UTR 0.35 TCGA-76-6664-01 4 72897628 72897628 T A NPFFR2 Missense_Mutation p.F4I 0.38 deleterious_low_confidence(0) benign(0) TCGA-76-6664-01 5 10461398 10461398 T G ROPN1L Missense_Mutation p.Y174D 0.33 deleterious(0) probably_damaging(1) TCGA-76-6664-01 5 178555036 178555036 G A ADAMTS2 Silent p.N847N 0.32 TCGA-76-6664-01 5 82816676 82816676 G A VCAN Missense_Mutation p.A851T 0.37 tolerated(0.23) benign(0.04) TCGA-76-6664-01 6 160240043 160240043 G A PNLDC1 Nonsense_Mutation p.W430* 0.33 TCGA-76-6664-01 6 26428247 26428247 A T BTN2A3P RNA 0.24 TCGA-76-6664-01 6 27925491 27925491 G T OR2B6 Missense_Mutation p.W158L 0.38 tolerated(0.82) benign(0.001) TCGA-76-6664-01 7 18066638 18066638 T A PRPS1L1 Silent p.P256P 0.26 TCGA-76-6664-01 7 92730646 92730646 C G SAMD9 Missense_Mutation p.V1589L 0.25 tolerated(0.11) benign(0.004) TCGA-76-6664-01 8 22550311 22550311 C T EGR3 Missense_Mutation p.M49I 0.26 tolerated(0.21) benign(0.003) TCGA-76-6664-01 8 87666239 87666239 C T CNGB3 Splice_Site p.X301_splice 0.13 TCGA-76-6664-01 9 128092422 128092422 G A GAPVD1 Missense_Mutation p.D700N 0.36 tolerated(0.09) probably_damaging(0.98) TCGA-76-6664-01 9 990870 990870 C T DMRT3 Silent p.R428R 0.53 TCGA-76-6664-01 X 101770022 101770022 C T TMSB15A Missense_Mutation p.E24K 0.36 tolerated(0.09) benign(0.001) TCGA-76-6664-01 X 101970131 101970131 A G GPRASP2 Missense_Mutation p.T112A 0.34 deleterious(0.02) benign(0.008) TCGA-76-6664-01 X 154250846 154250846 T C F8 5'UTR 0.37 TCGA-76-6664-01 X 21995314 21995314 G A SMS Silent p.S155S 0.29 TCGA-76-6664-01 X 43628565 43628565 C G MAOB Missense_Mutation p.A446P 0.22 deleterious(0) probably_damaging(0.998) TCGA-76-6664-01 X 47486225 47486225 C G CFP Missense_Mutation p.C296S 0.27 deleterious(0) probably_damaging(1) TCGA-76-6664-01 X 69421881 69421881 G A DGAT2L6 Missense_Mutation p.R205H 0.29 tolerated(0.08) benign(0.056) TCGA-76-6664-01 X 77296145 77296145 G T ATP7A Missense_Mutation p.A1239S 0.37 deleterious(0) benign(0.107) TCGA-76-6664-01 X 7870101 7870101 G A PNPLA4 Nonsense_Mutation p.R187* 0.38 TCGA-81-5910-01 10 89711891 89711891 G A PTEN Missense_Mutation p.S170N 0.79 deleterious(0) probably_damaging(0.998) TCGA-81-5910-01 11 129762715 129762715 A C NFRKB Missense_Mutation p.D23E 0.06 deleterious(0.04) unknown(0) TCGA-81-5910-01 11 70009414 70009414 G A ANO1 Missense_Mutation p.V640M 0.31 deleterious(0.03) possibly_damaging(0.833) TCGA-81-5910-01 12 104102273 104102273 G T STAB2 Missense_Mutation p.C1416F 0.30 deleterious(0) probably_damaging(0.999) TCGA-81-5910-01 12 2602399 2602399 G A CACNA1C Silent p.T320T 0.38 TCGA-81-5910-01 12 85277483 85277483 G T SLC6A15 Intron 0.38 TCGA-81-5910-01 12 94761893 94761893 C T CCDC41 Missense_Mutation p.R378H 0.34 deleterious(0) possibly_damaging(0.885) TCGA-81-5910-01 13 113852564 113852564 C T PCID2 Silent p.E47E 0.39 TCGA-81-5910-01 14 42356780 42356780 A G LRFN5 Missense_Mutation p.I318V 0.30 tolerated(0.6) benign(0.23) TCGA-81-5910-01 15 23931738 23931738 G A NDN Silent p.A209A 0.44 TCGA-81-5910-01 16 20651783 20651783 C T ACSM1 Silent p.T372T 0.28 TCGA-81-5910-01 16 23387159 23387159 G A SCNN1B Missense_Mutation p.R418Q 0.48 tolerated(1) benign(0.003) TCGA-81-5910-01 16 81181775 81181775 G A PKD1L2 RNA 0.25 TCGA-81-5910-01 16 86585659 86585659 C T MTHFSD Missense_Mutation p.V73I 0.25 tolerated(0.18) benign(0.016) TCGA-81-5910-01 17 64299034 64299034 G A PRKCA Missense_Mutation p.R22H 0.11 deleterious(0) probably_damaging(0.999) TCGA-81-5910-01 18 42532158 42532158 C T SETBP1 Silent p.L951L 0.50 TCGA-81-5910-01 18 6956725 6956725 G A LAMA1 Silent p.V2668V 0.38 TCGA-81-5910-01 19 30934790 30934790 C T ZNF536 Silent p.N107N 0.43 TCGA-81-5910-01 19 34895691 34895691 C T RP11-618P17.4 Silent p.C111C 0.45 TCGA-81-5910-01 19 38990276 38990276 C T RYR1 Silent p.G2343G 0.34 TCGA-81-5910-01 19 54312898 54312898 G A NLRP12 Missense_Mutation p.A672V 0.29 tolerated(0.28) benign(0.173) TCGA-81-5910-01 19 8130913 8130913 G A FBN3 Missense_Mutation p.R2774W 0.62 tolerated(0.19) benign(0.001) TCGA-81-5910-01 1 158735944 158735944 C T OR6N1 Missense_Mutation p.V177I 0.39 tolerated(1) benign(0) TCGA-81-5910-01 1 161042415 161042415 A G PVRL4 3'UTR 0.24 TCGA-81-5910-01 1 216419959 216419959 C T USH2A Missense_Mutation p.R926H 0.38 benign(0.344) TCGA-81-5910-01 1 248202093 248202094 - T OR2L2 Frame_Shift_Ins p.C178Lfs*2 0.30 TCGA-81-5910-01 1 36820904 36820904 T C STK40 Missense_Mutation p.N158S 0.44 tolerated(0.07) probably_damaging(0.961) TCGA-81-5910-01 1 41461704 41461705 - A CTPS1 Frame_Shift_Ins p.M281Nfs*10 0.32 TCGA-81-5910-01 1 79094655 79094655 C T IFI44L Silent p.D166D 0.42 TCGA-81-5910-01 1 8424220 8424220 C A RERE Nonsense_Mutation p.E546* 0.49 TCGA-81-5910-01 1 8424221 8424221 A C RERE Missense_Mutation p.I545M 0.50 probably_damaging(0.974) TCGA-81-5910-01 21 38792646 38792646 A C DYRK1A 5'UTR 0.47 TCGA-81-5910-01 22 36714329 36714329 C T MYH9 Missense_Mutation p.D384N 0.41 benign(0.128) TCGA-81-5910-01 22 46829324 46829324 C T CELSR1 Missense_Mutation p.R1526Q 0.15 tolerated(1) benign(0.017) TCGA-81-5910-01 2 100209854 100209854 G C AFF3 Missense_Mutation p.L782V 0.37 deleterious(0.01) possibly_damaging(0.813) TCGA-81-5910-01 2 167162345 167162345 G A SCN9A Missense_Mutation p.R185C 0.29 deleterious(0) probably_damaging(1) TCGA-81-5910-01 2 170145548 170145548 G A LRP2 Missense_Mutation p.R344C 0.42 possibly_damaging(0.88) TCGA-81-5910-01 2 179498195 179498195 G A TTN Silent p.G14297G 0.58 TCGA-81-5910-01 2 202545627 202545627 T G MPP4 Missense_Mutation p.Q288P 0.52 deleterious(0) probably_damaging(0.999) TCGA-81-5910-01 2 216271132 216271132 C A FN1 Missense_Mutation p.V939L 0.09 deleterious(0.04) probably_damaging(0.998) TCGA-81-5910-01 2 223066892 223066892 G A PAX3 Silent p.T397T 0.27 TCGA-81-5910-01 3 120976169 120976169 T G STXBP5L Missense_Mutation p.I607M 0.33 tolerated(0.17) possibly_damaging(0.864) TCGA-81-5910-01 3 189456442 189456442 C T TP63 Missense_Mutation p.S68L 0.06 deleterious(0.02) benign(0.288) TCGA-81-5910-01 3 9976243 9976243 C A CRELD1 Missense_Mutation p.P41T 0.32 tolerated(0.92) benign(0.002) TCGA-81-5910-01 4 25416009 25416009 T C ANAPC4 Splice_Site p.X562_splice 0.36 TCGA-81-5910-01 4 55946311 55946311 T G KDR Missense_Mutation p.S1290R 0.40 deleterious(0.03) probably_damaging(0.999) TCGA-81-5910-01 5 40853460 40853460 G A CARD6 Missense_Mutation p.A676T 0.44 tolerated(0.2) benign(0.091) TCGA-81-5910-01 6 105577294 105577294 T C BVES Missense_Mutation p.N104S 0.43 deleterious(0.01) benign(0.194) TCGA-81-5910-01 7 102669857 102669857 C T FBXL13 Silent p.P3P 0.13 TCGA-81-5910-01 7 103234169 103234169 C T RELN Missense_Mutation p.R1291Q 0.21 tolerated(0.08) possibly_damaging(0.881) TCGA-81-5910-01 7 142008771 142008771 C T TRBV3-1 Missense_Mutation p.R82C 0.29 deleterious(0.03) possibly_damaging(0.735) TCGA-81-5910-01 7 144098554 144098554 C T NOBOX Silent p.P143P 0.25 TCGA-81-5910-01 7 55221710 55221710 C T EGFR Missense_Mutation p.R252C 0.10 deleterious(0.03) possibly_damaging(0.899) TCGA-81-5910-01 7 99691889 99691889 G A MCM7 Silent p.Y585Y 0.28 TCGA-81-5910-01 9 107267210 107267210 G A OR13F1 Missense_Mutation p.A223T 0.41 tolerated(0.18) benign(0) TCGA-81-5910-01 9 135975714 135975714 T C RALGDS Missense_Mutation p.N837S 0.37 tolerated(0.07) unknown(0) TCGA-81-5910-01 9 14848723 14848723 T A FREM1 Missense_Mutation p.T401S 0.73 tolerated(0.08) benign(0.066) TCGA-81-5910-01 9 215042 215042 C A C9orf66 Missense_Mutation p.G119W 0.64 deleterious_low_confidence(0) probably_damaging(0.984) TCGA-81-5910-01 9 84532024 84532024 T C SPATA31D5P RNA 0.44 TCGA-81-5910-01 X 123171416 123171416 C T STAG2 Nonsense_Mutation p.R110* 0.91 TCGA-81-5911-01 10 89692923 89692923 G A PTEN Missense_Mutation p.C136Y 0.66 deleterious(0.04) possibly_damaging(0.634) TCGA-81-5911-01 11 107224390 107224390 G A CWF19L2 Missense_Mutation p.R649C 0.42 tolerated(0.14) benign(0.006) TCGA-81-5911-01 11 1269330 1269330 C T MUC5B Silent p.T3740T 0.24 TCGA-81-5911-01 11 55541619 55541619 C T OR5D13 Missense_Mutation p.R236C 0.32 tolerated(0.07) benign(0.082) TCGA-81-5911-01 11 61615699 61615699 G A FADS2 Silent p.K229K 0.36 TCGA-81-5911-01 12 2795380 2795380 G A CACNA1C Missense_Mutation p.R1958Q 0.32 tolerated_low_confidence(1) benign(0) TCGA-81-5911-01 12 68647280 68647280 C T IL22 Intron 0.22 TCGA-81-5911-01 12 98126437 98126437 T C RP11-1016B18.1 RNA 0.28 TCGA-81-5911-01 13 48934208 48934208 T A RB1 Nonsense_Mutation p.C221* 0.63 TCGA-81-5911-01 15 90161424 90161424 C A TICRR Missense_Mutation p.S1001Y 0.30 deleterious(0) probably_damaging(1) TCGA-81-5911-01 16 20554273 20554273 G A ACSM2B Missense_Mutation p.T491M 0.31 deleterious(0) probably_damaging(0.977) TCGA-81-5911-01 17 3851127 3851127 T A ATP2A3 Missense_Mutation p.K218I 0.29 deleterious(0.02) possibly_damaging(0.885) TCGA-81-5911-01 17 54450196 54450196 A T ANKFN1 Missense_Mutation p.H267L 0.10 deleterious(0) benign(0.444) TCGA-81-5911-01 17 61514742 61514742 C A CYB561 Missense_Mutation p.C56F 0.35 tolerated(0.36) benign(0.236) TCGA-81-5911-01 17 62532771 62532771 C T CEP95 Nonsense_Mutation p.R708* 0.39 TCGA-81-5911-01 17 72356364 72356364 C A BTBD17 Missense_Mutation p.G36W 0.21 deleterious_low_confidence(0.01) possibly_damaging(0.716) TCGA-81-5911-01 19 52272612 52272612 T C FPR2 Missense_Mutation p.I234T 0.04 tolerated(0.18) benign(0.035) TCGA-81-5911-01 19 54848923 54848923 C T LILRA4 Missense_Mutation p.V234M 0.21 tolerated(0.1) benign(0.354) TCGA-81-5911-01 19 54872745 54872745 C T LAIR1 Missense_Mutation p.V48M 0.19 deleterious(0) probably_damaging(0.993) TCGA-81-5911-01 19 9226170 9226171 - T OR7G1 Frame_Shift_Ins p.S91Efs*83 0.22 TCGA-81-5911-01 1 120512286 120512286 T C NOTCH2 Missense_Mutation p.N319S 0.48 tolerated(0.41) probably_damaging(0.998) TCGA-81-5911-01 20 3682241 3682241 C T SIGLEC1 Missense_Mutation p.G426R 0.32 tolerated(0.07) possibly_damaging(0.739) TCGA-81-5911-01 21 34861310 34861310 G A DNAJC28 Missense_Mutation p.P131S 0.31 deleterious(0.01) probably_damaging(0.99) TCGA-81-5911-01 2 102805705 102805705 C T IL1RL2 Silent p.D76D 0.28 TCGA-81-5911-01 2 208842070 208842070 G C PLEKHM3 Missense_Mutation p.T284S 0.27 tolerated(0.41) benign(0.001) TCGA-81-5911-01 2 39234297 39234297 C A SOS1 Missense_Mutation p.A850S 0.26 tolerated(0.09) benign(0.098) TCGA-81-5911-01 3 1424680 1424680 C T CNTN6 Missense_Mutation p.R741W 0.30 deleterious(0.03) possibly_damaging(0.893) TCGA-81-5911-01 4 79400817 79400817 C T FRAS1 Silent p.N2796N 0.43 TCGA-81-5911-01 4 87749309 87749309 C T SLC10A6 Missense_Mutation p.V200I 0.40 tolerated(0.19) benign(0.076) TCGA-81-5911-01 7 143807297 143807297 G A OR2A2 Missense_Mutation p.G208R 0.24 deleterious(0.02) possibly_damaging(0.57) TCGA-81-5911-01 7 55221822 55221822 C T EGFR Missense_Mutation p.A289V 0.71 deleterious(0.02) probably_damaging(0.974) TCGA-81-5911-01 7 76112453 76112453 C T DTX2 Silent p.S299S 0.09 TCGA-81-5911-01 7 76610566 76610566 C T UPK3B Intron 0.32 TCGA-81-5911-01 8 114290824 114290824 C T CSMD3 Missense_Mutation p.E171K 0.31 tolerated(0.38) benign(0.03) TCGA-81-5911-01 8 142151330 142151330 C T DENND3 Missense_Mutation p.T97M 0.04 tolerated(0.17) benign(0.018) TCGA-81-5911-01 X 107224904 107224904 G A TEX13B Missense_Mutation p.H152Y 0.75 deleterious(0.02) benign(0.409) TCGA-87-5896-01 10 38407548 38407548 T C ZNF37A Missense_Mutation p.I490T 0.76 tolerated(1) benign(0.038) TCGA-87-5896-01 11 100999671 100999671 G T PGR Missense_Mutation p.T44N 0.45 tolerated_low_confidence(0.18) benign(0.079) TCGA-87-5896-01 11 107536065 107536065 A G ELMOD1 3'UTR 0.33 TCGA-87-5896-01 12 104390580 104390580 G A GLT8D2 Missense_Mutation p.A178V 0.37 tolerated(0.29) possibly_damaging(0.483) TCGA-87-5896-01 12 111772341 111772341 G A CUX2 Missense_Mutation p.S1008N 0.33 deleterious(0.02) possibly_damaging(0.451) TCGA-87-5896-01 12 48371798 48371798 G A COL2A1 Nonsense_Mutation p.R1036* 0.39 TCGA-87-5896-01 13 95705392 95705392 A C ABCC4 Missense_Mutation p.F1138C 0.28 deleterious(0) probably_damaging(1) TCGA-87-5896-01 14 50089072 50089072 G A MGAT2 Nonsense_Mutation p.W362* 0.36 TCGA-87-5896-01 15 43269028 43269028 T A UBR1 Missense_Mutation p.D1419V 0.39 deleterious(0.02) benign(0.166) TCGA-87-5896-01 15 74925078 74925078 C A EDC3 Missense_Mutation p.G468W 0.34 deleterious(0) possibly_damaging(0.837) TCGA-87-5896-01 15 75980829 75980829 A C CSPG4 Nonsense_Mutation p.Y859* 0.41 TCGA-87-5896-01 16 70928434 70928434 C T HYDIN Missense_Mutation p.D3056N 0.35 possibly_damaging(0.908) TCGA-87-5896-01 16 89598461 89598461 G A SPG7 Silent p.V379V 0.43 TCGA-87-5896-01 17 32583358 32583358 T A CCL2 Missense_Mutation p.I65N 0.38 deleterious(0.02) possibly_damaging(0.869) TCGA-87-5896-01 17 38641225 38641225 G A TNS4 Silent p.F441F 0.40 TCGA-87-5896-01 17 39116597 39116597 C T KRT39 Missense_Mutation p.V385I 0.48 tolerated(0.11) benign(0.016) TCGA-87-5896-01 17 48246591 48246591 C T SGCA Silent p.R241R 0.36 TCGA-87-5896-01 17 56277732 56277732 C T EPX Nonsense_Mutation p.R562* 0.41 TCGA-87-5896-01 17 77711814 77711814 G A ENPP7 Missense_Mutation p.G449E 0.38 tolerated_low_confidence(0.09) benign(0.157) TCGA-87-5896-01 18 14542921 14542921 G A POTEC Silent p.S75S 0.20 TCGA-87-5896-01 18 61387390 61387390 G A SERPINB11 Splice_Site p.X206_splice 0.40 TCGA-87-5896-01 18 6977852 6977852 G A LAMA1 Silent p.D2073D 0.33 TCGA-87-5896-01 19 35979579 35979579 G A KRTDAP Silent p.I51I 0.23 TCGA-87-5896-01 19 38621245 38621245 C T SIPA1L3 Silent p.D992D 0.49 TCGA-87-5896-01 19 41133127 41133127 C T LTBP4 Silent p.D1477D 0.33 TCGA-87-5896-01 19 42301582 42301582 G A CEACAM3 Silent p.P42P 0.31 TCGA-87-5896-01 19 43383725 43383725 G T PSG1 Silent p.T3T 0.24 TCGA-87-5896-01 19 5273496 5273496 C T PTPRS Silent p.S112S 0.28 TCGA-87-5896-01 1 153409549 153409549 G A S100A7L2 Silent p.S108S 0.41 TCGA-87-5896-01 1 238048511 238048511 A C ZP4 Missense_Mutation p.F422C 0.46 deleterious(0) probably_damaging(1) TCGA-87-5896-01 1 248685273 248685273 C T OR2G6 Missense_Mutation p.S109L 0.42 deleterious(0) possibly_damaging(0.815) TCGA-87-5896-01 1 52498511 52498511 C T KTI12 Missense_Mutation p.R308Q 0.46 tolerated(0.52) benign(0.006) TCGA-87-5896-01 1 65141094 65141094 C T CACHD1 Missense_Mutation p.T862M 0.41 deleterious(0) possibly_damaging(0.84) TCGA-87-5896-01 1 84961638 84961638 C G RPF1 Nonsense_Mutation p.S258* 0.27 TCGA-87-5896-01 1 86851250 86851250 T A ODF2L Missense_Mutation p.E46V 0.36 deleterious(0) possibly_damaging(0.784) TCGA-87-5896-01 2 102440436 102440436 A T MAP4K4 Missense_Mutation p.Y76F 0.33 deleterious_low_confidence(0) unknown(0) TCGA-87-5896-01 2 107460197 107460197 C T ST6GAL2 Silent p.A79A 0.61 TCGA-87-5896-01 2 3392072 3392072 C T TRAPPC12 Silent p.S226S 0.39 TCGA-87-5896-01 3 154139085 154139085 T C GPR149 Missense_Mutation p.I456V 0.37 tolerated(0.18) benign(0.019) TCGA-87-5896-01 3 164716358 164716358 G A SI Nonsense_Mutation p.R1504* 0.39 TCGA-87-5896-01 3 170800078 170800078 T G TNIK Missense_Mutation p.D1092A 0.33 deleterious(0.02) probably_damaging(0.963) TCGA-87-5896-01 3 180694104 180694104 G C FXR1 3'UTR 0.44 TCGA-87-5896-01 4 70346348 70346348 G A UGT2B4 3'UTR 0.46 TCGA-87-5896-01 5 122754205 122754205 C T CEP120 Silent p.R18R 0.07 TCGA-87-5896-01 5 148521623 148521623 C T ABLIM3 5'UTR 0.33 TCGA-87-5896-01 5 178551999 178551999 C T ADAMTS2 Missense_Mutation p.R978H 0.51 deleterious(0.05) benign(0.001) TCGA-87-5896-01 5 39153687 39153687 C T FYB Silent p.T395T 0.36 TCGA-87-5896-01 5 75998408 75998408 A G IQGAP2 Missense_Mutation p.N1536S 0.40 tolerated(0.05) benign(0.056) TCGA-87-5896-01 6 109827537 109827537 T C AK9 Missense_Mutation p.I1614M 0.35 deleterious(0.03) possibly_damaging(0.793) TCGA-87-5896-01 6 165723098 165723098 T C C6orf118 5'Flank 0.24 TCGA-87-5896-01 6 38957817 38957817 G A DNAH8 Silent p.P4144P 0.38 TCGA-87-5896-01 6 43304859 43304860 - A ZNF318 3'UTR 0.37 TCGA-87-5896-01 6 52658945 52658945 C T GSTA1 Missense_Mutation p.R131H 0.36 tolerated(0.07) benign(0.056) TCGA-87-5896-01 6 7565623 7565623 G A DSP Missense_Mutation p.R270Q 0.39 probably_damaging(0.964) TCGA-87-5896-01 7 142566033 142566033 C T EPHB6 Silent p.Y651Y 0.37 TCGA-87-5896-01 7 48450229 48450229 G T ABCA13 Silent p.L4061L 0.27 TCGA-87-5896-01 7 53104048 53104048 C A POM121L12 Silent p.S228S 0.32 TCGA-87-5896-01 7 72717906 72717906 G A NSUN5 Silent p.L354L 0.40 TCGA-87-5896-01 7 7612689 7612689 C T MIOS Nonsense_Mutation p.R195* 0.25 TCGA-87-5896-01 8 133008719 133008719 C T EFR3A Missense_Mutation p.S711F 0.20 deleterious(0.03) possibly_damaging(0.495) TCGA-87-5896-01 8 67507922 67507922 G A MYBL1 Nonsense_Mutation p.Q195* 0.38 TCGA-87-5896-01 9 112687347 112687347 T C PALM2-AKAP2 Missense_Mutation p.S127P 0.38 tolerated(0.08) possibly_damaging(0.474) TCGA-87-5896-01 9 135945919 135945919 C T CEL Missense_Mutation p.A456V 0.06 deleterious(0.03) probably_damaging(1) TCGA-87-5896-01 9 95077750 95077750 G A NOL8 Missense_Mutation p.A386V 0.36 deleterious(0.01) benign(0.107) TCGA-87-5896-01 X 119243159 119243159 G A RHOXF1 Silent p.V182V 0.40 TCGA-87-5896-01 X 131348336 131348336 A C RAP2C Missense_Mutation p.W138G 0.38 deleterious(0) probably_damaging(1) TCGA-87-5896-01 X 138643011 138643011 G A F9 Missense_Mutation p.A279T 0.48 tolerated(0.06) possibly_damaging(0.77) TCGA-87-5896-01 X 150891145 150891145 G A FATE1 Missense_Mutation p.A156T 0.51 tolerated(0.24) benign(0.116) TCGA-87-5896-01 X 20074865 20074865 C T MAP7D2 Silent p.Q139Q 0.33 TCGA-87-5896-01 X 39933293 39933293 C T BCOR Missense_Mutation p.V436I 0.40 tolerated(0.2) benign(0.007) TCGA-87-5896-01 X 54783873 54783873 G T ITIH6 Missense_Mutation p.N878K 0.40 tolerated(0.95) benign(0) TCGA-87-5896-01 X 57935325 57935325 G A ZXDA Silent p.F510F 0.41 TCGA-OX-A56R-01 10 103753360 103753360 C A C10orf76 Missense_Mutation p.D404Y 0.77 deleterious(0) probably_damaging(0.911) TCGA-OX-A56R-01 10 27538332 27538332 G A RP11-85G18.6 Intron 0.85 TCGA-OX-A56R-01 10 89711876 89711876 G A PTEN Missense_Mutation p.G165E 0.95 deleterious(0) probably_damaging(0.994) TCGA-OX-A56R-01 10 96495206 96495206 G A CYP2C18 3'UTR 0.86 TCGA-OX-A56R-01 11 103027444 103027444 C T DYNC2H1 Missense_Mutation p.R1358C 0.46 possibly_damaging(0.797) TCGA-OX-A56R-01 11 47767784 47767784 C G FNBP4 Missense_Mutation p.E357Q 0.44 deleterious(0.01) possibly_damaging(0.886) TCGA-OX-A56R-01 11 5475386 5475386 G A OR51I2 Missense_Mutation p.R223H 0.42 tolerated(0.58) benign(0.01) TCGA-OX-A56R-01 11 70319246 70319246 G A SHANK2 Missense_Mutation p.R1761C 0.45 tolerated(0.16) possibly_damaging(0.689) TCGA-OX-A56R-01 12 11546170 11546170 C T PRB2 Missense_Mutation p.G281E 0.38 tolerated(0.41) unknown(0) TCGA-OX-A56R-01 12 50349252 50349252 C T AQP2 Missense_Mutation p.P226L 0.54 tolerated(0.55) benign(0.01) TCGA-OX-A56R-01 12 81110998 81110998 C T MYF5 Silent p.D52D 0.37 TCGA-OX-A56R-01 13 113516786 113516786 G A ATP11A Missense_Mutation p.R963H 0.56 tolerated(0.08) possibly_damaging(0.696) TCGA-OX-A56R-01 14 106610488 106610488 C T IGHV3-15 Missense_Mutation p.G61E 0.89 tolerated_low_confidence(0.09) probably_damaging(0.956) TCGA-OX-A56R-01 14 24642127 24642127 G C REC8 Missense_Mutation p.V49L 0.93 tolerated(0.1) benign(0.225) TCGA-OX-A56R-01 14 33684537 33684537 C G NPAS3 Missense_Mutation p.T97R 0.90 deleterious(0) possibly_damaging(0.507) TCGA-OX-A56R-01 16 15022262 15022262 C T RP11-958N24.1 RNA 0.23 TCGA-OX-A56R-01 17 42335934 42335934 C T SLC4A1 Missense_Mutation p.E312K 0.35 tolerated(0.1) benign(0.003) TCGA-OX-A56R-01 17 70119749 70119749 G A SOX9 Missense_Mutation p.D251N 0.44 deleterious(0.02) probably_damaging(0.996) TCGA-OX-A56R-01 17 7752902 7752902 C T KDM6B Missense_Mutation p.P1099L 0.53 benign(0.128) TCGA-OX-A56R-01 19 4511516 4511516 T G PLIN4 Missense_Mutation p.D805A 0.25 deleterious(0) possibly_damaging(0.742) TCGA-OX-A56R-01 19 55284986 55284986 C T KIR2DL1 Missense_Mutation p.T91M 0.38 tolerated(0.07) benign(0.024) TCGA-OX-A56R-01 19 56369355 56369355 C T NLRP4 Missense_Mutation p.T199M 0.40 tolerated(0.06) benign(0.18) TCGA-OX-A56R-01 1 117484575 117484575 G A PTGFRN Silent p.R96R 0.38 TCGA-OX-A56R-01 1 152882618 152882618 G A IVL Silent p.R115R 0.37 TCGA-OX-A56R-01 1 154956125 154956127 AGA - FLAD1 5'UTR 0.50 TCGA-OX-A56R-01 1 15817859 15817861 AAT - CELA2B 3'UTR 0.80 TCGA-OX-A56R-01 1 214185016 214185016 C T PROX1 Silent p.Y662Y 0.50 TCGA-OX-A56R-01 1 248512383 248512384 - T OR14C36 Frame_Shift_Ins p.V106Cfs*14 0.44 TCGA-OX-A56R-01 1 51439813 51439818 GGCCAG AGCAA CDKN2C Frame_Shift_Del p.S128Tfs*28 0.83 TCGA-OX-A56R-01 21 30445943 30445943 G T CCT8 5'UTR 0.43 TCGA-OX-A56R-01 22 22892441 22892441 C T PRAME Missense_Mutation p.M220I 0.93 tolerated(0.69) benign(0.001) TCGA-OX-A56R-01 2 145274899 145274899 C G ZEB2 Missense_Mutation p.A7P 0.34 deleterious(0.01) benign(0.099) TCGA-OX-A56R-01 2 203560693 203560693 G A FAM117B Missense_Mutation p.G231R 0.46 deleterious(0) probably_damaging(1) TCGA-OX-A56R-01 3 122172795 122172795 G T KPNA1 Silent p.T162T 0.09 TCGA-OX-A56R-01 3 20216145 20216146 TC - SGOL1 Frame_Shift_Del p.E293Rfs*6 0.19 TCGA-OX-A56R-01 3 64636813 64636813 T C ADAMTS9 Missense_Mutation p.N448S 0.42 tolerated(0.4) benign(0.159) TCGA-OX-A56R-01 3 7188146 7188146 A G GRM7 Missense_Mutation p.Q176R 0.41 deleterious(0) probably_damaging(0.988) TCGA-OX-A56R-01 3 97983191 97983191 T C OR5H6 Silent p.N21N 0.46 TCGA-OX-A56R-01 4 110763739 110763739 G A RRH Missense_Mutation p.A279T 0.39 deleterious(0.03) probably_damaging(0.995) TCGA-OX-A56R-01 4 57522150 57522150 G A HOPX Missense_Mutation p.A24V 0.11 tolerated_low_confidence(0.19) possibly_damaging(0.695) TCGA-OX-A56R-01 4 69696436 69696436 C T UGT2B10 Nonsense_Mutation p.R476* 0.43 TCGA-OX-A56R-01 4 957020 957020 C T DGKQ Missense_Mutation p.G598E 0.52 deleterious(0) probably_damaging(0.998) TCGA-OX-A56R-01 5 140182957 140182957 G A PCDHA3 Silent p.A725A 0.40 TCGA-OX-A56R-01 5 177570715 177570715 G C RMND5B Missense_Mutation p.G172R 0.19 tolerated(0.58) benign(0.005) TCGA-OX-A56R-01 6 163956128 163956130 GAA - QKI In_Frame_Del p.E174del 0.86 TCGA-OX-A56R-01 6 17764340 17764340 C G KIF13A 3'UTR 0.71 TCGA-OX-A56R-01 7 11487003 11487003 C T THSD7A Missense_Mutation p.C885Y 0.19 deleterious(0) probably_damaging(0.997) TCGA-OX-A56R-01 7 14724984 14724984 C T DGKB Missense_Mutation p.V239M 0.26 tolerated(0.28) benign(0.097) TCGA-OX-A56R-01 7 151860747 151860747 G A KMT2C Silent p.P3305P 0.28 TCGA-OX-A56R-01 7 32110054 32110054 G T PDE1C Intron 0.39 TCGA-OX-A56R-01 7 55233043 55233043 G T EGFR Missense_Mutation p.G598V 0.43 deleterious(0) possibly_damaging(0.75) TCGA-OX-A56R-01 8 8654980 8654980 C T MFHAS1 Missense_Mutation p.R1007K 0.47 tolerated(0.17) benign(0.15) TCGA-OX-A56R-01 8 94717192 94717195 AGTT - FAM92A1 Frame_Shift_Del p.L130Kfs*47 0.40 TCGA-RR-A6KA-01 10 129904961 129904961 C T MKI67 Missense_Mutation p.E1715K 0.35 deleterious(0.03) probably_damaging(1) TCGA-RR-A6KA-01 11 101342909 101342909 T A TRPC6 Missense_Mutation p.M722L 0.21 deleterious(0) probably_damaging(0.941) TCGA-RR-A6KA-01 11 128350241 128350241 C T ETS1 Missense_Mutation p.R323H 0.22 deleterious(0.01) probably_damaging(0.991) TCGA-RR-A6KA-01 11 26463596 26463596 A T ANO3 Missense_Mutation p.T60S 0.24 tolerated_low_confidence(0.74) benign(0.021) TCGA-RR-A6KA-01 11 35747526 35747526 A G TRIM44 Missense_Mutation p.K268E 0.39 deleterious(0.01) unknown(0) TCGA-RR-A6KA-01 11 59225042 59225042 C T OR4D6 Silent p.N203N 0.20 TCGA-RR-A6KA-01 11 64361006 64361006 C T SLC22A12 Silent p.G212G 0.37 TCGA-RR-A6KA-01 11 64594552 64594552 G A CDC42BPG Silent p.N1453N 0.27 TCGA-RR-A6KA-01 11 76893107 76893107 G A MYO7A Silent p.A1005A 0.19 TCGA-RR-A6KA-01 11 94759273 94759273 C T KDM4E Silent p.T184T 0.28 TCGA-RR-A6KA-01 12 112673414 112673414 C T HECTD4 Nonsense_Mutation p.W1727* 0.24 TCGA-RR-A6KA-01 12 117977689 117977689 G C KSR2 Missense_Mutation p.H508D 0.29 deleterious(0.01) possibly_damaging(0.721) TCGA-RR-A6KA-01 12 7528038 7528038 A T CD163L1 Missense_Mutation p.L947H 0.17 deleterious(0) possibly_damaging(0.908) TCGA-RR-A6KA-01 14 52734497 52734497 C T PTGDR 5'UTR 0.21 TCGA-RR-A6KA-01 14 99182634 99182634 C A C14orf177 Missense_Mutation p.L36I 0.33 tolerated_low_confidence(0.38) possibly_damaging(0.567) TCGA-RR-A6KA-01 15 90347139 90347139 G A ANPEP Missense_Mutation p.A425V 0.19 tolerated(0.32) benign(0.042) TCGA-RR-A6KA-01 16 72992249 72992249 T C ZFHX3 Missense_Mutation p.N599S 0.34 benign(0.01) TCGA-RR-A6KA-01 17 62488804 62488804 G A POLG2 Nonsense_Mutation p.R259* 0.10 TCGA-RR-A6KA-01 17 64212914 64212914 C G APOH Missense_Mutation p.S259T 0.17 tolerated(0.68) benign(0.004) TCGA-RR-A6KA-01 19 10112223 10112223 G A COL5A3 Missense_Mutation p.R363W 0.16 unknown(0) TCGA-RR-A6KA-01 19 19735114 19735114 C T LPAR2 Missense_Mutation p.R336H 0.17 tolerated(0.06) benign(0.004) TCGA-RR-A6KA-01 19 31769118 31769118 T G TSHZ3 Missense_Mutation p.E527D 0.20 deleterious(0.01) probably_damaging(0.99) TCGA-RR-A6KA-01 19 43414732 43414732 G A PSG6 Missense_Mutation p.P236S 0.18 tolerated(0.47) benign(0.004) TCGA-RR-A6KA-01 19 53740355 53740355 T C ZNF677 Missense_Mutation p.H542R 0.17 deleterious(0.02) benign(0.133) TCGA-RR-A6KA-01 1 197071808 197071808 A T ASPM Silent p.T2191T 0.25 TCGA-RR-A6KA-01 1 21044080 21044080 C T KIF17 Silent p.Q40Q 0.25 TCGA-RR-A6KA-01 1 24408556 24408556 G - MYOM3 Frame_Shift_Del p.H739Mfs*123 0.31 TCGA-RR-A6KA-01 1 2447003 2447003 C T PANK4 Missense_Mutation p.G458R 0.31 tolerated(0.41) possibly_damaging(0.657) TCGA-RR-A6KA-01 1 248202227 248202227 G T OR2L2 Missense_Mutation p.V220F 0.23 deleterious(0) benign(0.405) TCGA-RR-A6KA-01 1 26507084 26507084 G A CNKSR1 Missense_Mutation p.E65K 0.29 deleterious(0) probably_damaging(1) TCGA-RR-A6KA-01 1 26508851 26508851 G A CNKSR1 Splice_Site p.X160_splice 0.21 TCGA-RR-A6KA-01 1 26508867 26508867 G C CNKSR1 Missense_Mutation p.E165Q 0.22 deleterious(0) possibly_damaging(0.572) TCGA-RR-A6KA-01 1 36023657 36023657 A C NCDN 5'UTR 0.25 TCGA-RR-A6KA-01 1 41485976 41485976 G A SLFNL1 Silent p.H119H 0.06 TCGA-RR-A6KA-01 20 18022341 18022341 C T OVOL2 Silent p.S116S 0.15 TCGA-RR-A6KA-01 20 31024960 31024960 C T ASXL1 Missense_Mutation p.A1482V 0.15 deleterious(0) possibly_damaging(0.858) TCGA-RR-A6KA-01 20 40980914 40980914 C T PTPRT Silent p.K524K 0.08 TCGA-RR-A6KA-01 20 6758955 6758955 G C BMP2 Missense_Mutation p.S137T 0.31 tolerated(0.55) benign(0.001) TCGA-RR-A6KA-01 22 36876721 36876721 G A TXN2 Missense_Mutation p.T55M 0.29 tolerated(0.09) possibly_damaging(0.507) TCGA-RR-A6KA-01 2 120236415 120236415 T C SCTR Silent p.R91R 0.31 TCGA-RR-A6KA-01 2 185802738 185802738 C A ZNF804A Missense_Mutation p.T872K 0.31 deleterious(0) benign(0.025) TCGA-RR-A6KA-01 2 233899234 233899234 C T NEU2 Missense_Mutation p.R204C 0.07 deleterious(0.05) benign(0.001) TCGA-RR-A6KA-01 2 47300868 47300868 A G TTC7A Missense_Mutation p.K795E 0.24 tolerated(0.29) benign(0.158) TCGA-RR-A6KA-01 2 7164586 7164586 C T RNF144A Missense_Mutation p.A199V 0.21 deleterious(0) probably_damaging(1) TCGA-RR-A6KA-01 3 178936095 178936095 A C PIK3CA Missense_Mutation p.Q546P 0.38 deleterious(0.01) probably_damaging(0.993) TCGA-RR-A6KA-01 4 104579371 104579371 C T TACR3 Splice_Site p.X246_splice 0.36 TCGA-RR-A6KA-01 4 154479508 154479508 G A KIAA0922 Silent p.L216L 0.35 TCGA-RR-A6KA-01 4 1985601 1985601 G C NELFA Missense_Mutation p.Q437E 0.29 tolerated(0.32) benign(0.388) TCGA-RR-A6KA-01 4 89060982 89060982 G A ABCG2 Nonsense_Mutation p.R56* 0.16 TCGA-RR-A6KA-01 5 149439388 149439388 G A CSF1R Silent p.G669G 0.31 TCGA-RR-A6KA-01 6 17629316 17629316 G A NUP153 Silent p.T1038T 0.25 TCGA-RR-A6KA-01 6 35748830 35748830 T A CLPSL1 5'UTR 0.31 TCGA-RR-A6KA-01 6 43592344 43592344 G A GTPBP2 Missense_Mutation p.R335W 0.06 deleterious(0) probably_damaging(0.992) TCGA-RR-A6KA-01 6 87970609 87970609 G A ZNF292 Missense_Mutation p.R2421Q 0.14 deleterious(0) possibly_damaging(0.862) TCGA-RR-A6KA-01 7 2564944 2564944 C T LFNG Silent p.S191S 0.18 TCGA-RR-A6KA-01 7 47969067 47969067 G T PKD1L1 Missense_Mutation p.S265Y 0.20 tolerated(1) benign(0.002) TCGA-RR-A6KA-01 8 133920461 133920461 A C TG Missense_Mutation p.Q1293P 0.29 deleterious(0.02) possibly_damaging(0.451) TCGA-RR-A6KA-01 8 142477639 142477639 G A MROH5 3'UTR 0.21 TCGA-RR-A6KA-01 8 143763433 143763433 G A PSCA Silent p.T76T 0.24 TCGA-RR-A6KA-01 8 94738660 94738660 T C FAM92A1 Silent p.S232S 0.17 TCGA-RR-A6KA-01 9 34658651 34658651 C T IL11RA Missense_Mutation p.R261C 0.25 deleterious(0) probably_damaging(0.988) TCGA-RR-A6KA-01 9 74300158 74300158 G A TMEM2 Silent p.R1369R 0.23 TCGA-RR-A6KA-01 9 78789969 78789970 - T PCSK5 Frame_Shift_Ins p.P610Sfs*9 0.22 TCGA-RR-A6KA-01 X 125299771 125299771 G C DCAF12L2 Missense_Mutation p.A46G 0.19 tolerated(0.19) benign(0.44) TCGA-RR-A6KA-01 X 150841010 150841010 G A PASD1 Missense_Mutation p.C598Y 0.29 tolerated(1) possibly_damaging(0.588) TCGA-RR-A6KA-01 X 53589138 53589138 A G HUWE1 Silent p.S2424S 0.33 TCGA-RR-A6KA-01 X 54466879 54466879 C T TSR2 Nonsense_Mutation p.R9* 0.38 TCGA-RR-A6KA-01 X 54956713 54956713 A T TRO Missense_Mutation p.S1186C 0.22 deleterious(0) probably_damaging(0.991) TCGA-RR-A6KA-01 X 75004826 75004826 C T MAGEE2 Missense_Mutation p.D21N 0.34 tolerated_low_confidence(0.18) benign(0.001) TCGA-RR-A6KB-01 10 124610003 124610003 G A FAM24B Missense_Mutation p.A10V 0.18 tolerated(1) unknown(0) TCGA-RR-A6KB-01 10 125426393 125426393 C T GPR26 Missense_Mutation p.T157M 0.42 deleterious(0) probably_damaging(0.989) TCGA-RR-A6KB-01 11 19256577 19256577 G A E2F8 Silent p.I160I 0.18 TCGA-RR-A6KB-01 11 45672133 45672133 C T CHST1 Missense_Mutation p.R114Q 0.22 deleterious(0.03) probably_damaging(1) TCGA-RR-A6KB-01 11 59481029 59481029 C G OR10V1 Missense_Mutation p.G97A 0.29 deleterious(0.03) benign(0.323) TCGA-RR-A6KB-01 11 65623145 65623145 G T CFL1 Missense_Mutation p.A123D 0.15 tolerated(0.08) possibly_damaging(0.664) TCGA-RR-A6KB-01 12 112888211 112888211 A C PTPN11 Missense_Mutation p.E76A 0.10 deleterious(0) probably_damaging(0.985) TCGA-RR-A6KB-01 12 49110635 49110635 G T CCNT1 5'UTR 0.21 TCGA-RR-A6KB-01 12 49436523 49436523 C T KMT2D Splice_Site p.X1928_splice 0.17 TCGA-RR-A6KB-01 12 50030597 50030597 C T PRPF40B Nonsense_Mutation p.R509* 0.23 TCGA-RR-A6KB-01 14 105407743 105407743 C T AHNAK2 Missense_Mutation p.R4682H 0.18 probably_damaging(0.921) TCGA-RR-A6KB-01 14 106405744 106405744 G C IGHV6-1 Missense_Mutation p.S77C 0.14 deleterious(0.01) probably_damaging(0.923) TCGA-RR-A6KB-01 14 50319530 50319530 A G NEMF 5'UTR 0.20 TCGA-RR-A6KB-01 15 43502556 43502556 C T EPB42 Missense_Mutation p.V241M 0.10 deleterious(0) probably_damaging(0.997) TCGA-RR-A6KB-01 16 19483554 19483554 T C TMC5 Missense_Mutation p.Y643H 0.15 tolerated(0.49) benign(0.009) TCGA-RR-A6KB-01 16 21693115 21693115 G A OTOA Missense_Mutation p.R79Q 0.27 tolerated(0.58) benign(0.022) TCGA-RR-A6KB-01 17 34587305 34587305 G A TBC1D3C Silent p.S150S 0.09 TCGA-RR-A6KB-01 17 3854680 3854680 G A ATP2A3 Missense_Mutation p.R110C 0.21 deleterious(0) possibly_damaging(0.853) TCGA-RR-A6KB-01 17 47295139 47295139 G A ABI3 Silent p.E108E 0.21 TCGA-RR-A6KB-01 18 77457942 77457942 C T CTDP1 Missense_Mutation p.T192M 0.22 deleterious(0) probably_damaging(1) TCGA-RR-A6KB-01 19 17100559 17100559 C T CPAMD8 Missense_Mutation p.G477E 0.29 deleterious(0.01) possibly_damaging(0.773) TCGA-RR-A6KB-01 19 35556925 35556925 C T HPN Nonsense_Mutation p.Q402* 0.24 TCGA-RR-A6KB-01 19 36042479 36042479 A T ATP4A Missense_Mutation p.F919I 0.20 deleterious(0) possibly_damaging(0.571) TCGA-RR-A6KB-01 19 50482374 50482374 T C VRK3 Missense_Mutation p.I468V 0.18 tolerated(1) benign(0) TCGA-RR-A6KB-01 19 5867569 5867569 G A FUT5 Silent p.T56T 0.21 TCGA-RR-A6KB-01 1 114191951 114191954 GTAA - MAGI3 Splice_Site p.X749_splice 0.11 TCGA-RR-A6KB-01 1 114484029 114484029 A C HIPK1 Missense_Mutation p.S342R 0.10 deleterious(0) probably_damaging(0.981) TCGA-RR-A6KB-01 1 156290695 156290695 T C CCT3 Missense_Mutation p.M182V 0.13 tolerated(0.12) benign(0.01) TCGA-RR-A6KB-01 1 223567387 223567387 G A C1orf65 Silent p.S190S 0.20 TCGA-RR-A6KB-01 1 29189552 29189552 C T OPRD1 Silent p.R292R 0.16 TCGA-RR-A6KB-01 1 6530577 6530577 C T PLEKHG5 Missense_Mutation p.E636K 0.12 deleterious(0.01) probably_damaging(0.956) TCGA-RR-A6KB-01 20 31887729 31887729 G A BPIFB1 Missense_Mutation p.R229H 0.09 tolerated(0.89) benign(0) TCGA-RR-A6KB-01 20 33447281 33447281 C T GGT7 Missense_Mutation p.A327T 0.33 tolerated(0.26) benign(0.008) TCGA-RR-A6KB-01 20 5282771 5282771 C T PROKR2 Missense_Mutation p.R357Q 0.23 tolerated(0.67) benign(0.001) TCGA-RR-A6KB-01 22 22989352 22989352 G T GGTLC2 Splice_Site p.X102_splice 0.21 TCGA-RR-A6KB-01 22 43603587 43603587 G A SCUBE1 Missense_Mutation p.R923C 0.22 deleterious(0) probably_damaging(0.999) TCGA-RR-A6KB-01 2 152348915 152348915 G A NEB Missense_Mutation p.R8287W 0.30 probably_damaging(0.991) TCGA-RR-A6KB-01 2 220326602 220326602 A T SPEG Splice_Site p.X814_splice 0.19 TCGA-RR-A6KB-01 2 234637924 234637924 T C UGT1A3 Missense_Mutation p.L51P 0.28 deleterious(0) probably_damaging(0.994) TCGA-RR-A6KB-01 3 118645097 118645097 G A IGSF11 Missense_Mutation p.P144L 0.12 deleterious(0.01) possibly_damaging(0.609) TCGA-RR-A6KB-01 3 133368225 133368225 A C TOPBP1 Splice_Site p.X502_splice 0.33 TCGA-RR-A6KB-01 3 13679188 13679188 C T FBLN2 Silent p.P1155P 0.19 TCGA-RR-A6KB-01 3 150931285 150931285 G A P2RY14 Missense_Mutation p.R274W 0.28 deleterious(0) benign(0.339) TCGA-RR-A6KB-01 3 47890008 47890008 T A DHX30 Missense_Mutation p.V848E 0.13 deleterious(0) probably_damaging(0.979) TCGA-RR-A6KB-01 3 77651499 77651499 C G ROBO2 Missense_Mutation p.A1014G 0.24 deleterious(0.02) benign(0.364) TCGA-RR-A6KB-01 3 77651513 77651513 T C ROBO2 Silent p.L1019L 0.19 TCGA-RR-A6KB-01 4 110908979 110908979 T C EGF Silent p.C857C 0.23 TCGA-RR-A6KB-01 5 140503166 140503166 G A PCDHB4 Missense_Mutation p.R529H 0.21 tolerated_low_confidence(0.25) benign(0.022) TCGA-RR-A6KB-01 5 140563843 140563843 C T PCDHB16 Missense_Mutation p.A570V 0.44 tolerated_low_confidence(0.05) benign(0.02) TCGA-RR-A6KB-01 5 67589138 67589138 G A PIK3R1 Missense_Mutation p.G376R 0.24 deleterious(0) probably_damaging(1) TCGA-RR-A6KB-01 6 40360066 40360066 G A LRFN2 Silent p.S662S 0.22 TCGA-RR-A6KB-01 7 142334795 142334795 G A TRBV20-1 Missense_Mutation p.E73K 0.12 deleterious(0) probably_damaging(0.938) TCGA-RR-A6KB-01 7 47847958 47847958 A T PKD1L1 Missense_Mutation p.Y2572N 0.18 deleterious(0.02) probably_damaging(0.984) TCGA-RR-A6KB-01 7 50450266 50450266 C T IKZF1 Silent p.C150C 0.12 TCGA-RR-A6KB-01 7 72420566 72420566 C A POM121 3'UTR 0.09 TCGA-RR-A6KB-01 8 120800646 120800646 G C TAF2 Missense_Mutation p.F575L 0.04 deleterious(0) possibly_damaging(0.687) TCGA-RR-A6KB-01 8 22005730 22005730 G T LGI3 Silent p.P530P 0.17 TCGA-RR-A6KB-01 9 105767804 105767804 G A CYLC2 Silent p.T297T 0.53 TCGA-RR-A6KB-01 9 107602684 107602684 C T ABCA1 Silent p.G310G 0.07 TCGA-RR-A6KB-01 9 116136378 116136378 G A HDHD3 Missense_Mutation p.A86V 0.17 deleterious(0.01) possibly_damaging(0.782) TCGA-RR-A6KB-01 9 95048827 95048827 T C IARS Missense_Mutation p.E157G 0.14 deleterious(0) probably_damaging(0.99) TCGA-RR-A6KC-01 10 95111015 95111015 G A MYOF Missense_Mutation p.A1287V 0.58 tolerated(0.19) possibly_damaging(0.533) TCGA-RR-A6KC-01 11 18305386 18305386 T C HPS5 Missense_Mutation p.N1005S 0.31 tolerated(0.39) benign(0.089) TCGA-RR-A6KC-01 11 4133254 4133254 T G RRM1 Silent p.T204T 0.38 TCGA-RR-A6KC-01 11 4944896 4944896 C T OR51G1 Missense_Mutation p.R225H 0.35 tolerated(0.22) benign(0.009) TCGA-RR-A6KC-01 11 55944929 55944929 C T OR5J2 Missense_Mutation p.T279M 0.43 deleterious(0) probably_damaging(0.984) TCGA-RR-A6KC-01 11 58384196 58384196 G A ZFP91 Silent p.R370R 0.36 TCGA-RR-A6KC-01 11 61111623 61111623 G T DAK Missense_Mutation p.R373L 0.06 tolerated(0.53) benign(0.001) TCGA-RR-A6KC-01 11 70319250 70319250 C T SHANK2 Silent p.A1759A 0.38 TCGA-RR-A6KC-01 12 119909967 119909967 G C CCDC60 Missense_Mutation p.L113F 0.38 deleterious(0.02) benign(0.128) TCGA-RR-A6KC-01 12 26834929 26834929 G A ITPR2 Silent p.F429F 0.41 TCGA-RR-A6KC-01 12 41352944 41352944 G A CNTN1 Missense_Mutation p.R571Q 0.18 tolerated(0.2) benign(0.166) TCGA-RR-A6KC-01 12 7015108 7015108 G T LRRC23 Missense_Mutation p.V76F 0.33 tolerated(0.05) benign(0.374) TCGA-RR-A6KC-01 12 85492739 85492739 C A LRRIQ1 Missense_Mutation p.P1059H 0.39 deleterious(0) probably_damaging(1) TCGA-RR-A6KC-01 13 110434405 110434405 C A IRS2 Missense_Mutation p.E1332D 0.33 tolerated_low_confidence(0.07) probably_damaging(0.931) TCGA-RR-A6KC-01 13 21555753 21555753 G A LATS2 Silent p.S839S 0.50 TCGA-RR-A6KC-01 14 35234327 35234327 C T BAZ1A Missense_Mutation p.R1150H 0.34 deleterious(0) probably_damaging(0.991) TCGA-RR-A6KC-01 14 74970754 74970754 G A LTBP2 Missense_Mutation p.A1486V 0.11 tolerated(0.37) probably_damaging(1) TCGA-RR-A6KC-01 15 101434269 101434269 C T ALDH1A3 Silent p.L216L 0.33 TCGA-RR-A6KC-01 15 50897334 50897335 AT - TRPM7 Frame_Shift_Del p.M906Vfs*2 0.28 TCGA-RR-A6KC-01 16 3085531 3085531 C T CCDC64B Intron 0.50 TCGA-RR-A6KC-01 16 46766305 46766305 G A MYLK3 Missense_Mutation p.T426M 0.32 tolerated(0.34) benign(0.003) TCGA-RR-A6KC-01 16 47682515 47682515 C T PHKB Silent p.L560L 0.32 TCGA-RR-A6KC-01 16 89350445 89350445 G A ANKRD11 Silent p.D835D 0.36 TCGA-RR-A6KC-01 17 1562052 1562052 T C PRPF8 Missense_Mutation p.Y1715C 0.47 deleterious(0) possibly_damaging(0.823) TCGA-RR-A6KC-01 17 33984660 33984660 G A AP2B1 Silent p.T613T 0.22 TCGA-RR-A6KC-01 17 39535403 39535403 G A KRT34 Missense_Mutation p.T343M 0.37 deleterious(0.02) possibly_damaging(0.903) TCGA-RR-A6KC-01 17 39673185 39673185 C T KRT15 Missense_Mutation p.V205I 0.30 deleterious(0.01) possibly_damaging(0.655) TCGA-RR-A6KC-01 17 48745809 48745809 C T ABCC3 Missense_Mutation p.R601W 0.27 deleterious(0) probably_damaging(0.997) TCGA-RR-A6KC-01 19 14846903 14846903 G A EMR2 3'UTR 0.35 TCGA-RR-A6KC-01 19 19460159 19460159 A G MAU2 Missense_Mutation p.M488V 0.23 tolerated(0.14) benign(0.383) TCGA-RR-A6KC-01 19 3783885 3783885 C T MATK Missense_Mutation p.R171H 0.19 tolerated(0.08) probably_damaging(0.993) TCGA-RR-A6KC-01 19 55087355 55087355 A C LILRA2 Missense_Mutation p.Q345P 0.37 deleterious(0) probably_damaging(0.959) TCGA-RR-A6KC-01 19 56243816 56243816 G A NLRP9 Nonsense_Mutation p.R461* 0.31 TCGA-RR-A6KC-01 1 109514162 109514162 C T WDR47 Missense_Mutation p.V892M 0.38 deleterious(0) probably_damaging(0.983) TCGA-RR-A6KC-01 1 205306644 205306644 C T KLHDC8A Missense_Mutation p.M312I 0.33 tolerated(0.07) possibly_damaging(0.627) TCGA-RR-A6KC-01 1 220366695 220366695 T C RAB3GAP2 Missense_Mutation p.H386R 0.23 tolerated(0.09) benign(0.003) TCGA-RR-A6KC-01 1 22927222 22927222 C T EPHA8 Silent p.S819S 0.35 TCGA-RR-A6KC-01 1 248059574 248059574 G A OR2W3 Missense_Mutation p.R229Q 0.36 tolerated(0.26) benign(0.015) TCGA-RR-A6KC-01 20 19634759 19634759 G T SLC24A3 Silent p.L222L 0.20 TCGA-RR-A6KC-01 20 53227026 53227026 G A DOK5 Silent p.Q233Q 0.27 TCGA-RR-A6KC-01 22 23162171 23162171 G A IGLV3-9 Silent p.T88T 0.21 TCGA-RR-A6KC-01 2 102781689 102781689 C T IL1R1 Silent p.D137D 0.48 TCGA-RR-A6KC-01 2 219205492 219205492 G A PNKD Silent p.L169L 0.46 TCGA-RR-A6KC-01 2 234072381 234072381 G A INPP5D Silent p.T411T 0.43 TCGA-RR-A6KC-01 3 178922364 178922364 G T PIK3CA Missense_Mutation p.C378F 0.32 tolerated(0.68) benign(0.016) TCGA-RR-A6KC-01 3 183756740 183756740 G A HTR3D Missense_Mutation p.V448I 0.34 tolerated(0.31) benign(0.211) TCGA-RR-A6KC-01 3 49314348 49314348 G A C3orf62 5'UTR 0.13 TCGA-RR-A6KC-01 4 120192463 120192463 A C USP53 Missense_Mutation p.E483A 0.31 deleterious(0) benign(0.354) TCGA-RR-A6KC-01 4 40119548 40119548 G A N4BP2 Missense_Mutation p.R575H 0.38 tolerated(0.13) probably_damaging(0.971) TCGA-RR-A6KC-01 5 140202644 140202644 C T PCDHA5 Silent p.D428D 0.46 TCGA-RR-A6KC-01 5 179221023 179221023 G A LTC4S 5'UTR 0.55 TCGA-RR-A6KC-01 5 26988367 26988367 T A CDH9 Missense_Mutation p.Q25L 0.32 tolerated(0.31) benign(0.021) TCGA-RR-A6KC-01 6 47847267 47847267 G A PTCHD4 Missense_Mutation p.T438M 0.49 tolerated(0.12) possibly_damaging(0.832) TCGA-RR-A6KC-01 7 151127244 151127244 C T CRYGN Missense_Mutation p.G147R 0.34 tolerated_low_confidence(0.29) probably_damaging(0.995) TCGA-RR-A6KC-01 7 20768053 20768053 C T ABCB5 Nonsense_Mutation p.R948* 0.22 TCGA-RR-A6KC-01 7 55221710 55221710 C T EGFR Missense_Mutation p.R252C 0.41 deleterious(0.03) possibly_damaging(0.899) TCGA-RR-A6KC-01 7 99017498 99017498 C G ATP5J2-PTCD1 3'UTR 0.17 TCGA-RR-A6KC-01 9 125377831 125377831 G A OR1Q1 Missense_Mutation p.R272H 0.46 tolerated(0.21) benign(0.071) TCGA-RR-A6KC-01 9 140330478 140330478 C T ENTPD8 Missense_Mutation p.R346Q 0.36 tolerated(0.35) benign(0.001) TCGA-RR-A6KC-01 9 35735346 35735346 G C CREB3 Missense_Mutation p.V196L 0.33 deleterious(0) benign(0.43) TCGA-RR-A6KC-01 X 77529253 77529253 C T CYSLTR1 5'UTR 0.76 TCGA-RR-A6KC-01 Y 9304951 9304951 C G TSPY1 Silent p.A114A 0.33