sample	chr	start	end	reference	alt	gene	effect	Amino_Acid_Change	DNA_VAF	SIFT	PolyPhen
TCGA-KL-8323-01	10	16967262	16967262	G	A	CUBN	Silent	p.I2208I	0.14		
TCGA-KL-8323-01	10	89711966	89711966	T	C	PTEN	Missense_Mutation	p.F195S	0.79	deleterious(0)	benign(0.193)
TCGA-KL-8323-01	11	605169	605169	G	T	PHRF1	Missense_Mutation	p.R401S	0.45	tolerated(0.13)	possibly_damaging(0.774)
TCGA-KL-8323-01	11	93517753	93517753	A	G	MED17	Missense_Mutation	p.D25G	0.39	deleterious(0)	probably_damaging(0.991)
TCGA-KL-8323-01	12	109526037	109526037	G	A	ALKBH2	Missense_Mutation	p.R254C	0.27	deleterious(0.03)	probably_damaging(0.999)
TCGA-KL-8323-01	15	28447318	28447318	A	G	HERC2	Missense_Mutation	p.S2520P	0.04		possibly_damaging(0.791)
TCGA-KL-8323-01	15	81295653	81295653	G	A	MESDC1	Silent	p.R347R	0.27		
TCGA-KL-8323-01	15	88727494	88727494	G	A	NTRK3	Silent	p.N95N	0.59		
TCGA-KL-8323-01	16	57788846	57788846	A	G	KATNB1	Silent	p.A411A	0.10		
TCGA-KL-8323-01	16	88499219	88499219	G	A	ZNF469	Missense_Mutation	p.G1753S	0.44		benign(0.001)
TCGA-KL-8323-01	17	19284374	19284374	C	T	MAPK7	Silent	p.A284A	0.88		
TCGA-KL-8323-01	17	39041356	39041356	G	A	KRT20	Missense_Mutation	p.R28C	0.85	deleterious(0)	possibly_damaging(0.642)
TCGA-KL-8323-01	17	7162030	7162030	A	G	ELP5	Intron		0.11		
TCGA-KL-8323-01	17	7462433	7462433	C	T	TNFSF13	Missense_Mutation	p.A26V	0.56	deleterious(0.01)	possibly_damaging(0.493)
TCGA-KL-8323-01	17	78082576	78082576	G	A	GAA	Silent	p.P425P	0.11		
TCGA-KL-8323-01	19	1084344	1084344	A	G	HMHA1	Silent	p.R1037R	0.46		
TCGA-KL-8323-01	19	13476272	13476272	C	T	CACNA1A	Missense_Mutation	p.V215I	0.08		possibly_damaging(0.636)
TCGA-KL-8323-01	19	36558850	36558851	-	AC	WDR62	Frame_Shift_Ins	p.S275Tfs*20	0.37		
TCGA-KL-8323-01	1	19480348	19480348	G	T	UBR4	Missense_Mutation	p.Q2182K	0.12		probably_damaging(0.92)
TCGA-KL-8323-01	1	19480349	19480349	C	A	UBR4	Missense_Mutation	p.Q2181H	0.12		probably_damaging(0.922)
TCGA-KL-8323-01	1	981116	981116	G	A	AGRN	Missense_Mutation	p.C847Y	0.13	deleterious(0)	possibly_damaging(0.712)
TCGA-KL-8323-01	22	29833529	29833529	A	G	RFPL1	5'Flank		0.15		
TCGA-KL-8323-01	22	32000342	32000342	C	T	SFI1	Silent	p.D643D	0.11		
TCGA-KL-8323-01	2	132273252	132273252	C	T	AC093838.4	RNA		0.74		
TCGA-KL-8323-01	2	132290352	132290352	G	C	CCDC74A	Missense_Mutation	p.E292Q	0.09	deleterious(0.02)	probably_damaging(0.988)
TCGA-KL-8323-01	2	152350685	152350685	T	C	NEB	Missense_Mutation	p.N8190S	0.05		possibly_damaging(0.57)
TCGA-KL-8323-01	2	242741375	242741375	C	T	GAL3ST2	Missense_Mutation	p.A100V	0.17	deleterious(0.05)	possibly_damaging(0.672)
TCGA-KL-8323-01	2	43507026	43507026	T	C	THADA	Missense_Mutation	p.D1725G	0.16	tolerated(0.08)	benign(0.018)
TCGA-KL-8323-01	3	166960302	166960302	T	C	ZBBX	Missense_Mutation	p.E795G	0.10	tolerated(0.07)	benign(0.081)
TCGA-KL-8323-01	3	71804279	71804279	G	A	GPR27	Missense_Mutation	p.R360Q	0.45	tolerated(1)	benign(0.001)
TCGA-KL-8323-01	4	100065351	100065351	C	A	ADH4	Intron		0.36		
TCGA-KL-8323-01	5	126755867	126755867	T	C	MEGF10	Missense_Mutation	p.W520R	0.08	deleterious(0)	benign(0.221)
TCGA-KL-8323-01	5	175530235	175530235	A	C	FAM153B	Missense_Mutation	p.I147L	0.02	tolerated_low_confidence(0.57)	benign(0.014)
TCGA-KL-8323-01	5	93076393	93076393	G	C	POU5F2	Missense_Mutation	p.H293D	0.35	deleterious(0)	benign(0.005)
TCGA-KL-8323-01	7	150746017	150746017	G	A	ASIC3	Silent	p.S15S	0.16		
TCGA-KL-8323-01	7	157931202	157931202	G	A	PTPRN2	Missense_Mutation	p.R306W	0.32	tolerated(0.07)	possibly_damaging(0.528)
TCGA-KL-8323-01	9	131007047	131007047	C	G	DNM1	Intron		0.33		
TCGA-KL-8323-01	9	140327707	140327707	G	A	NOXA1	Missense_Mutation	p.G301S	0.72	tolerated(0.55)	benign(0.098)
TCGA-KL-8323-01	9	77681741	77681741	G	T	NMRK1	Missense_Mutation	p.T171K	0.36	deleterious(0.03)	benign(0.438)
TCGA-KL-8323-01	X	119392127	119392127	G	A	ZBTB33	3'UTR		0.05		
TCGA-KL-8323-01	X	151284029	151284029	G	A	RP11-1007I13.4	RNA		0.36		
TCGA-KL-8323-01	X	36117961	36117961	C	T	CHDC2	Missense_Mutation	p.R273W	0.40	deleterious(0.02)	benign(0.15)
TCGA-KL-8323-01	X	41002593	41002593	T	G	USP9X	Missense_Mutation	p.L404R	0.30	deleterious(0)	benign(0.098)
TCGA-KL-8323-01	X	64137684	64137684	C	T	ZC4H2	Silent	p.P218P	0.03		
TCGA-KL-8324-01	10	32321694	32321694	T	A	KIF5B	Missense_Mutation	p.E438D	0.05	deleterious(0.04)	benign(0.017)
TCGA-KL-8324-01	11	65350193	65350193	G	T	EHBP1L1	Missense_Mutation	p.D684Y	0.13	deleterious(0.03)	benign(0.423)
TCGA-KL-8324-01	12	14589046	14589046	T	G	ATF7IP	Missense_Mutation	p.F551C	0.06	tolerated_low_confidence(0.06)	possibly_damaging(0.878)
TCGA-KL-8324-01	12	8196571	8196571	G	C	FOXJ2	Missense_Mutation	p.E168Q	0.04	tolerated(0.06)	probably_damaging(0.911)
TCGA-KL-8324-01	13	28197257	28197257	C	T	POLR1D	Missense_Mutation	p.P91L	0.04	deleterious(0.05)	benign(0.063)
TCGA-KL-8324-01	15	38773557	38773557	C	T	FAM98B	Missense_Mutation	p.T265M	0.32	deleterious(0.03)	probably_damaging(0.995)
TCGA-KL-8324-01	15	56657720	56657720	A	G	TEX9	Intron		0.17		
TCGA-KL-8324-01	15	86808005	86808005	G	A	AGBL1	Missense_Mutation	p.V489I	0.07	deleterious(0.01)	benign(0.02)
TCGA-KL-8324-01	16	31283282	31283282	A	G	ITGAM	Missense_Mutation	p.T225A	0.45	deleterious(0)	possibly_damaging(0.653)
TCGA-KL-8324-01	16	89349348	89349348	A	T	ANKRD11	Missense_Mutation	p.V1201D	0.11		benign(0.035)
TCGA-KL-8324-01	17	7400726	7400726	C	T	POLR2A	Missense_Mutation	p.R291W	0.12		possibly_damaging(0.892)
TCGA-KL-8324-01	17	7578190	7578190	T	C	TP53	Missense_Mutation	p.Y220C	0.06	deleterious(0)	probably_damaging(1)
TCGA-KL-8324-01	17	7578280	7578280	G	A	TP53	Missense_Mutation	p.P190L	0.22	deleterious(0.05)	possibly_damaging(0.812)
TCGA-KL-8324-01	18	44409771	44409771	T	A	PIAS2	Missense_Mutation	p.D421V	0.45	deleterious(0)	probably_damaging(0.937)
TCGA-KL-8324-01	19	12904096	12904099	TATT	-	JUNB	3'UTR		0.21		
TCGA-KL-8324-01	19	36340211	36340211	C	T	NPHS1	Missense_Mutation	p.R256Q	0.10	deleterious(0.03)	possibly_damaging(0.791)
TCGA-KL-8324-01	19	50031830	50031830	T	-	RCN3	Frame_Shift_Del	p.V34Gfs*7	0.13		
TCGA-KL-8324-01	19	54394940	54394940	G	A	PRKCG	Missense_Mutation	p.R181H	0.12	deleterious(0.01)	possibly_damaging(0.703)
TCGA-KL-8324-01	19	56466067	56466067	G	A	NLRP8	Missense_Mutation	p.G215R	0.45	deleterious(0)	probably_damaging(1)
TCGA-KL-8324-01	1	100353594	100353594	A	G	AGL	Silent	p.E914E	0.08		
TCGA-KL-8324-01	1	109731772	109731772	C	T	KIAA1324	Missense_Mutation	p.T435M	0.16	deleterious(0)	probably_damaging(0.988)
TCGA-KL-8324-01	1	112003712	112003712	A	G	ATP5F1	3'UTR		0.08		
TCGA-KL-8324-01	1	118535252	118535252	G	A	SPAG17	Missense_Mutation	p.P1733L	0.16	deleterious(0)	possibly_damaging(0.643)
TCGA-KL-8324-01	1	160969702	160969702	T	C	F11R	Missense_Mutation	p.T220A	0.08	tolerated(0.62)	benign(0.004)
TCGA-KL-8324-01	1	173506159	173506159	C	T	SLC9C2	Missense_Mutation	p.R526H	0.62	tolerated(0.32)	benign(0.001)
TCGA-KL-8324-01	1	24484160	24484160	C	A	IFNLR1	Missense_Mutation	p.Q341H	0.29	deleterious(0)	probably_damaging(0.94)
TCGA-KL-8324-01	1	55457726	55457726	G	T	TMEM61	Missense_Mutation	p.A195S	0.07	tolerated_low_confidence(0.08)	benign(0.063)
TCGA-KL-8324-01	20	36859706	36859706	C	T	KIAA1755	Missense_Mutation	p.R590Q	0.13	deleterious(0.02)	probably_damaging(1)
TCGA-KL-8324-01	22	38621520	38621520	T	C	TMEM184B	Missense_Mutation	p.Y233C	0.09	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8324-01	2	186689203	186689203	A	G	FSIP2	Silent	p.L6912L	0.15		
TCGA-KL-8324-01	2	197106878	197106878	C	T	HECW2	Missense_Mutation	p.E1194K	0.14	deleterious(0.05)	possibly_damaging(0.846)
TCGA-KL-8324-01	3	160804293	160804293	C	T	B3GALNT1	Missense_Mutation	p.V84M	0.07	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8324-01	4	186560084	186560084	G	A	SORBS2	Intron		0.12		
TCGA-KL-8324-01	4	81124587	81124587	G	C	PRDM8	Missense_Mutation	p.L657F	0.11	tolerated(0.06)	probably_damaging(0.971)
TCGA-KL-8324-01	5	1589396	1589396	A	T	SDHAP3	RNA		0.54		
TCGA-KL-8324-01	6	152652931	152652931	C	G	SYNE1	Missense_Mutation	p.D4297H	0.37		benign(0.303)
TCGA-KL-8324-01	7	22478078	22478078	A	T	STEAP1B	3'UTR		0.29		
TCGA-KL-8324-01	8	134474162	134474162	T	G	ST3GAL1	Missense_Mutation	p.T269P	0.07		probably_damaging(0.989)
TCGA-KL-8324-01	8	99440360	99440360	G	A	KCNS2	Silent	p.S51S	0.44		
TCGA-KL-8324-01	9	130477816	130477816	C	T	PTRH1	Intron		0.87		
TCGA-KL-8324-01	X	130219620	130219620	C	A	ARHGAP36	Silent	p.P338P	0.05		
TCGA-KL-8325-01	10	105205389	105205389	A	G	PDCD11	3'UTR		0.83		
TCGA-KL-8325-01	10	15719635	15719635	T	C	ITGA8	Missense_Mutation	p.N211S	0.09	tolerated(0.3)	benign(0.031)
TCGA-KL-8325-01	12	2783696	2783696	C	T	CACNA1C	Intron		0.47		
TCGA-KL-8325-01	12	7802197	7802197	C	T	APOBEC1	Silent	p.P219P	0.04		
TCGA-KL-8325-01	12	95456430	95456430	T	C	NR2C1	Missense_Mutation	p.T47A	0.05	tolerated_low_confidence(0.46)	benign(0.002)
TCGA-KL-8325-01	13	61989199	61989199	T	G	PCDH20	Silent	p.L31L	0.04		
TCGA-KL-8325-01	14	68052685	68052685	C	A	PLEKHH1	Nonsense_Mutation	p.Y1268*	0.47		
TCGA-KL-8325-01	15	101427815	101427815	C	A	ALDH1A3	Silent	p.A81A	0.48		
TCGA-KL-8325-01	15	49493438	49493438	A	G	GALK2	Missense_Mutation	p.N45D	0.07	deleterious(0)	probably_damaging(1)
TCGA-KL-8325-01	16	69148916	69148916	G	A	HAS3	Missense_Mutation	p.G470D	0.49	deleterious(0)	probably_damaging(0.996)
TCGA-KL-8325-01	17	43215198	43215198	G	A	ACBD4	Splice_Site	p.X204_splice	0.94		
TCGA-KL-8325-01	17	46882179	46882179	A	G	TTLL6	Missense_Mutation	p.L93P	0.06	tolerated(0.09)	benign(0.258)
TCGA-KL-8325-01	18	61223519	61223519	C	T	SERPINB12	Missense_Mutation	p.R43C	0.53	tolerated(0.13)	possibly_damaging(0.901)
TCGA-KL-8325-01	18	72238436	72238436	C	A	CNDP1	Missense_Mutation	p.Q258K	0.45	tolerated(1)	benign(0.068)
TCGA-KL-8325-01	19	9578613	9578613	A	T	ZNF560	Missense_Mutation	p.V337E	0.10	tolerated(0.69)	probably_damaging(0.942)
TCGA-KL-8325-01	1	11835533	11835533	G	A	C1orf167	Missense_Mutation	p.R701Q	0.07	tolerated(0.38)	unknown(0)
TCGA-KL-8325-01	1	170993854	170993854	A	T	MROH9	Missense_Mutation	p.K709I	0.08	deleterious(0.04)	possibly_damaging(0.732)
TCGA-KL-8325-01	1	204092909	204092909	A	G	SOX13	Missense_Mutation	p.N451S	0.14	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8325-01	1	26644516	26644516	G	A	CD52	Missense_Mutation	p.R3H	0.07	tolerated_low_confidence(0.11)	possibly_damaging(0.715)
TCGA-KL-8325-01	20	62839675	62839675	G	A	MYT1	Missense_Mutation	p.G376R	0.10		probably_damaging(0.959)
TCGA-KL-8325-01	2	206605324	206605324	C	T	NRP2	Missense_Mutation	p.R410C	0.11	deleterious(0)	probably_damaging(1)
TCGA-KL-8325-01	3	168834235	168834235	A	C	MECOM	Missense_Mutation	p.H352Q	0.06	tolerated(0.07)	probably_damaging(0.999)
TCGA-KL-8325-01	3	77526693	77526693	C	T	ROBO2	Nonsense_Mutation	p.R189*	0.05		
TCGA-KL-8325-01	7	155493692	155493692	A	G	RBM33	Intron		0.09		
TCGA-KL-8325-01	7	208958	208958	C	T	FAM20C	Missense_Mutation	p.A282V	0.08	deleterious(0.04)	possibly_damaging(0.49)
TCGA-KL-8325-01	7	33028128	33028128	G	A	FKBP9	Silent	p.R301R	0.43		
TCGA-KL-8325-01	8	27779572	27779572	G	A	SCARA5	Silent	p.G144G	0.61		
TCGA-KL-8325-01	8	36793457	36793457	C	T	KCNU1	3'UTR		0.51		
TCGA-KL-8325-01	9	103004868	103004868	C	T	INVS	Silent	p.V271V	0.88		
TCGA-KL-8325-01	X	142122056	142122056	A	G	SPANXN4	3'UTR		0.45		
TCGA-KL-8326-01	10	16941101	16941101	C	T	CUBN	Missense_Mutation	p.C2831Y	0.07	deleterious(0)	probably_damaging(0.988)
TCGA-KL-8326-01	11	103153739	103153739	C	A	DYNC2H1	Missense_Mutation	p.D3612E	0.39		benign(0.003)
TCGA-KL-8326-01	11	113934295	113934295	G	T	ZBTB16	Silent	p.T91T	0.08		
TCGA-KL-8326-01	11	68514791	68514791	G	A	MTL5	Missense_Mutation	p.P172L	0.30	tolerated(0.42)	benign(0.001)
TCGA-KL-8326-01	12	52448851	52448851	G	A	NR4A1	Missense_Mutation	p.D260N	0.05	tolerated(0.1)	benign(0.002)
TCGA-KL-8326-01	13	111928153	111928153	T	C	ARHGEF7	Intron		0.11		
TCGA-KL-8326-01	15	28408340	28408340	A	G	HERC2	Missense_Mutation	p.V3549A	0.06		benign(0.007)
TCGA-KL-8326-01	15	56388045	56388045	A	T	RFX7	Silent	p.A627A	0.11		
TCGA-KL-8326-01	17	17398941	17398941	T	A	RASD1	Missense_Mutation	p.Q115L	0.05	tolerated(0.68)	benign(0.006)
TCGA-KL-8326-01	17	61829230	61829233	AACA	-	CCDC47	Intron		0.44		
TCGA-KL-8326-01	1	168195254	168195254	C	T	SFT2D2	5'UTR		0.08		
TCGA-KL-8326-01	1	223568786	223568786	A	G	C1orf65	3'UTR		0.37		
TCGA-KL-8326-01	20	10626014	10626014	G	T	JAG1	Silent	p.T701T	0.07		
TCGA-KL-8326-01	20	36869241	36869241	G	T	KIAA1755	Missense_Mutation	p.A431E	0.10	tolerated(1)	benign(0.004)
TCGA-KL-8326-01	22	37769129	37769129	C	T	ELFN2	Missense_Mutation	p.A816T	0.09	deleterious(0)	probably_damaging(0.948)
TCGA-KL-8326-01	2	100038086	100038086	C	T	REV1	Missense_Mutation	p.C569Y	0.12	deleterious(0)	probably_damaging(1)
TCGA-KL-8326-01	2	102000023	102000023	G	T	CREG2	Missense_Mutation	p.L195M	0.10	tolerated(0.37)	probably_damaging(0.966)
TCGA-KL-8326-01	2	102000024	102000024	C	A	CREG2	Missense_Mutation	p.M194I	0.09	tolerated(0.06)	benign(0.006)
TCGA-KL-8326-01	2	11780773	11780773	A	G	GREB1	3'UTR		0.27		
TCGA-KL-8326-01	2	233347864	233347864	C	T	ECEL1	Missense_Mutation	p.G511D	0.05	deleterious(0)	probably_damaging(0.992)
TCGA-KL-8326-01	2	239090747	239090747	A	C	ILKAP	Nonsense_Mutation	p.Y265*	0.06		
TCGA-KL-8326-01	3	8809619	8809619	G	T	OXTR	Missense_Mutation	p.D85E	0.09	deleterious(0)	probably_damaging(1)
TCGA-KL-8326-01	4	126369744	126369744	G	A	FAT4	Missense_Mutation	p.A2525T	0.05		benign(0.045)
TCGA-KL-8326-01	4	156137223	156137223	G	C	NPY2R	3'UTR		0.09		
TCGA-KL-8326-01	5	126776527	126776527	G	A	MEGF10	Missense_Mutation	p.R777H	0.10	deleterious(0)	probably_damaging(1)
TCGA-KL-8326-01	6	147646106	147646106	C	A	STXBP5	Nonsense_Mutation	p.S605*	0.11		
TCGA-KL-8326-01	6	21597872	21597872	T	A	SOX4	3'UTR		0.24		
TCGA-KL-8326-01	6	21597873	21597873	T	A	SOX4	3'UTR		0.24		
TCGA-KL-8326-01	7	128483327	128483327	C	T	FLNC	Silent	p.H865H	0.04		
TCGA-KL-8326-01	7	139168253	139168253	T	C	KLRG2	Missense_Mutation	p.S46G	0.21	tolerated_low_confidence(0.36)	benign(0.006)
TCGA-KL-8326-01	7	151855973	151855973	G	A	KMT2C	Missense_Mutation	p.T3882I	0.05		benign(0.323)
TCGA-KL-8326-01	9	128246857	128246857	T	G	MAPKAP1	Silent	p.R358R	0.41		
TCGA-KL-8326-01	9	131046910	131046910	A	G	SWI5	Missense_Mutation	p.E183G	0.06	deleterious(0.02)	probably_damaging(0.982)
TCGA-KL-8326-01	9	135797337	135797349	CGAGATAGACTTC	-	TSC1	Frame_Shift_Del	p.E174Sfs*32	0.25		
TCGA-KL-8326-01	X	139038874	139038874	G	A	CXorf66	Silent	p.A89A	0.10		
TCGA-KL-8326-01	X	44703528	44703528	C	T	DUSP21	Silent	p.A50A	0.72		
TCGA-KL-8326-01	X	68382228	68382228	T	A	PJA1	Missense_Mutation	p.H285L	0.07	deleterious(0.03)	benign(0.01)
TCGA-KL-8326-01	X	91090725	91090725	G	T	PCDH11X	Silent	p.L74L	0.11		
TCGA-KL-8327-01	10	103899427	103899427	C	A	PPRC1	Missense_Mutation	p.Q388K	0.37	deleterious_low_confidence(0.04)	benign(0.014)
TCGA-KL-8327-01	11	64889873	64889873	C	T	MRPL49	Missense_Mutation	p.R19W	0.06	tolerated(0.16)	benign(0)
TCGA-KL-8327-01	12	2788865	2788865	G	A	CACNA1C	Missense_Mutation	p.G1831S	0.33	tolerated_low_confidence(0.7)	benign(0.005)
TCGA-KL-8327-01	17	42162437	42162437	T	C	HDAC5	Missense_Mutation	p.S714G	0.11	deleterious(0)	benign(0.119)
TCGA-KL-8327-01	17	72863041	72863041	A	G	FDXR	Silent	p.P88P	0.05		
TCGA-KL-8327-01	17	9808240	9808240	G	A	RCVRN	Silent	p.Y86Y	0.12		
TCGA-KL-8327-01	18	25543442	25543442	G	A	CDH2	Missense_Mutation	p.P798L	0.05	deleterious(0.01)	possibly_damaging(0.696)
TCGA-KL-8327-01	18	52937134	52937134	G	A	TCF4	Missense_Mutation	p.H386Y	0.29	deleterious(0.01)	possibly_damaging(0.783)
TCGA-KL-8327-01	19	19822268	19822268	A	G	ZNF14	Missense_Mutation	p.S608P	0.07	deleterious(0.02)	benign(0.39)
TCGA-KL-8327-01	19	49134133	49134155	GGCGCGGTAGTGGGACAGCTCCT	-	DBP	Frame_Shift_Del	p.Q306Rfs*29	0.36		
TCGA-KL-8327-01	19	5286261	5286261	A	G	PTPRS	Intron		0.12		
TCGA-KL-8327-01	1	155221684	155221684	G	A	FAM189B	Missense_Mutation	p.R212W	0.17	deleterious(0)	possibly_damaging(0.61)
TCGA-KL-8327-01	1	176915167	176915167	C	T	ASTN1	Missense_Mutation	p.S715N	0.12	tolerated(0.25)	benign(0)
TCGA-KL-8327-01	1	231471905	231471905	G	A	EXOC8	Silent	p.C529C	0.49		
TCGA-KL-8327-01	1	93645929	93645929	G	A	CCDC18	5'Flank		0.25		
TCGA-KL-8327-01	20	32255643	32255643	G	C	ACTL10	Missense_Mutation	p.V114L	0.22	tolerated(0.09)	benign(0.028)
TCGA-KL-8327-01	20	3730674	3730674	C	G	HSPA12B	Missense_Mutation	p.I367M	0.23	deleterious(0)	probably_damaging(0.993)
TCGA-KL-8327-01	22	30197985	30197985	G	A	ASCC2	Silent	p.D522D	0.21		
TCGA-KL-8327-01	2	203972766	203972766	T	C	NBEAL1	Missense_Mutation	p.S573P	0.05	deleterious(0.01)	possibly_damaging(0.864)
TCGA-KL-8327-01	2	89065634	89065634	G	A	AC096579.1	5'Flank		0.14		
TCGA-KL-8327-01	5	149460495	149460495	C	T	CSF1R	Missense_Mutation	p.V48M	0.15	deleterious(0.02)	benign(0.387)
TCGA-KL-8327-01	5	180001317	180001317	C	A	CNOT6	3'UTR		0.29		
TCGA-KL-8327-01	6	56846621	56846621	G	A	BEND6	Missense_Mutation	p.V5M	0.44	deleterious_low_confidence(0.01)	benign(0.002)
TCGA-KL-8327-01	8	101661717	101661717	A	G	SNX31	Missense_Mutation	p.V9A	0.06	tolerated(0.24)	benign(0.181)
TCGA-KL-8327-01	9	1055868	1055871	ATAA	-	DMRT2	Intron		0.16		
TCGA-KL-8327-01	9	138606541	138606541	G	A	KCNT1	Missense_Mutation	p.D77N	0.12	deleterious_low_confidence(0.02)	possibly_damaging(0.509)
TCGA-KL-8327-01	X	119389854	119389854	C	A	ZBTB33	3'UTR		0.07		
TCGA-KL-8327-01	X	23874422	23874422	T	C	APOO	Silent	p.Q186Q	0.15		
TCGA-KL-8327-01	X	49075819	49075819	G	A	CACNA1F	Silent	p.A889A	0.06		
TCGA-KL-8327-01	X	54784436	54784436	C	T	ITIH6	Missense_Mutation	p.G691R	0.04	deleterious(0.01)	possibly_damaging(0.523)
TCGA-KL-8328-01	10	124457697	124457697	T	G	C10orf120	Missense_Mutation	p.E187A	0.14	deleterious(0.02)	possibly_damaging(0.864)
TCGA-KL-8328-01	10	124457698	124457698	C	A	C10orf120	Nonsense_Mutation	p.E187*	0.14		
TCGA-KL-8328-01	11	117392079	117392079	C	T	DSCAML1	Missense_Mutation	p.G387S	0.06	tolerated(0.8)	benign(0.08)
TCGA-KL-8328-01	11	66330693	66330693	A	G	CTSF	3'Flank		0.08		
TCGA-KL-8328-01	12	3050058	3050058	C	T	TULP3	3'UTR		0.46		
TCGA-KL-8328-01	12	6701640	6701640	C	A	CHD4	Missense_Mutation	p.R956L	0.44	deleterious(0)	probably_damaging(0.913)
TCGA-KL-8328-01	14	20944680	20944680	G	A	PNP	Missense_Mutation	p.G264S	0.49	tolerated(0.33)	benign(0.004)
TCGA-KL-8328-01	15	101606197	101606197	C	T	LRRK1	Missense_Mutation	p.A1852V	0.20	tolerated(0.35)	benign(0)
TCGA-KL-8328-01	15	69079816	69079816	G	A	ANP32A	Missense_Mutation	p.P88L	0.10	deleterious(0.01)	probably_damaging(0.981)
TCGA-KL-8328-01	15	81216982	81216982	C	T	KIAA1199	Silent	p.N741N	0.06		
TCGA-KL-8328-01	16	10861781	10861781	G	T	TVP23A	3'UTR		0.33		
TCGA-KL-8328-01	17	21320083	21320083	G	A	KCNJ12	3'UTR		0.05		
TCGA-KL-8328-01	19	34712450	34712450	A	G	LSM14A	Missense_Mutation	p.N392S	0.40	deleterious(0)	probably_damaging(0.996)
TCGA-KL-8328-01	1	156531643	156531643	T	C	IQGAP3	Missense_Mutation	p.E343G	0.10	deleterious(0.02)	probably_damaging(0.954)
TCGA-KL-8328-01	1	205389693	205389693	T	C	LEMD1	5'UTR		0.89		
TCGA-KL-8328-01	1	61869880	61869880	G	A	NFIA	Missense_Mutation	p.E439K	0.08	deleterious(0.01)	possibly_damaging(0.57)
TCGA-KL-8328-01	2	168100984	168100984	C	T	XIRP2	Nonsense_Mutation	p.Q1028*	0.06		
TCGA-KL-8328-01	3	56649272	56649272	C	T	CCDC66	Silent	p.D561D	0.47		
TCGA-KL-8328-01	4	1729580	1729580	G	T	TACC3	Missense_Mutation	p.D151Y	0.13	deleterious(0.03)	possibly_damaging(0.73)
TCGA-KL-8328-01	4	88986631	88986631	C	T	PKD2	Nonsense_Mutation	p.R742*	0.47		
TCGA-KL-8328-01	4	94411803	94411803	G	A	GRID2	Silent	p.P624P	0.52		
TCGA-KL-8328-01	5	177421251	177421251	C	T	PROP1	Silent	p.P66P	0.16		
TCGA-KL-8328-01	5	178506374	178506374	C	A	ZNF354C	Missense_Mutation	p.T314N	0.41	tolerated(0.33)	possibly_damaging(0.794)
TCGA-KL-8328-01	6	136599231	136599231	T	A	BCLAF1	Missense_Mutation	p.H263L	0.30	deleterious(0.02)	benign(0.402)
TCGA-KL-8328-01	6	151673069	151673069	C	T	AKAP12	Silent	p.D1181D	0.23		
TCGA-KL-8328-01	7	150932432	150932432	C	T	CHPF2	Nonsense_Mutation	p.Q188*	0.39		
TCGA-KL-8328-01	7	73020310	73020310	G	A	MLXIPL	Silent	p.S250S	0.15		
TCGA-KL-8328-01	7	98254299	98254299	T	G	NPTX2	Missense_Mutation	p.Y237D	0.48	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8328-01	9	107367649	107367649	G	C	OR13C2	Nonsense_Mutation	p.S87*	0.09		
TCGA-KL-8328-01	9	113563201	113563201	G	A	MUSK	Missense_Mutation	p.S848N	0.05	tolerated(0.07)	possibly_damaging(0.513)
TCGA-KL-8328-01	9	2056812	2056812	T	A	SMARCA2	Silent	p.I438I	0.45		
TCGA-KL-8328-01	X	15657840	15657840	A	G	TMEM27	Silent	p.N119N	0.97		
TCGA-KL-8329-01	10	112657808	112657808	G	C	PDCD4	Missense_Mutation	p.E458Q	0.10	deleterious(0.02)	probably_damaging(0.999)
TCGA-KL-8329-01	10	64415147	64415147	A	T	ZNF365	Intron		0.70		
TCGA-KL-8329-01	10	89717769	89717769	T	A	PTEN	Missense_Mutation	p.L265Q	0.67	tolerated(0.15)	benign(0.102)
TCGA-KL-8329-01	11	124618250	124618250	T	A	VSIG2	Intron		0.20		
TCGA-KL-8329-01	11	65048558	65048558	G	A	POLA2	Silent	p.S280S	0.30		
TCGA-KL-8329-01	12	105504982	105504982	C	T	KIAA1033	Silent	p.D47D	0.37		
TCGA-KL-8329-01	12	58022926	58022926	C	T	B4GALNT1	Missense_Mutation	p.R239Q	0.14	tolerated(0.85)	benign(0.051)
TCGA-KL-8329-01	15	31234179	31234179	A	T	MTMR10	Missense_Mutation	p.L610I	0.41	tolerated(1)	benign(0.016)
TCGA-KL-8329-01	15	31779425	31779425	G	A	OTUD7A	Missense_Mutation	p.T441M	0.13	deleterious(0.01)	probably_damaging(0.997)
TCGA-KL-8329-01	15	91030265	91030277	GTTCGACGTGCCT	-	IQGAP1	Frame_Shift_Del	p.F1369Efs*14	0.38		
TCGA-KL-8329-01	16	19131754	19131754	C	A	ITPRIPL2	3'UTR		0.34		
TCGA-KL-8329-01	16	67232185	67232185	C	A	E2F4	3'UTR		0.46		
TCGA-KL-8329-01	17	73502411	73502411	G	A	CASKIN2	Missense_Mutation	p.T234I	0.75	deleterious(0.01)	probably_damaging(0.997)
TCGA-KL-8329-01	17	7577594	7577594	A	T	TP53	Nonsense_Mutation	p.C229*	0.17		
TCGA-KL-8329-01	17	7578235	7578235	T	C	TP53	Missense_Mutation	p.Y205C	0.07	deleterious(0)	probably_damaging(0.99)
TCGA-KL-8329-01	19	38865223	38865223	A	G	PSMD8	5'UTR		0.24		
TCGA-KL-8329-01	19	42222091	42222091	C	T	CEACAM5	Missense_Mutation	p.R428C	0.32	tolerated(0.17)	probably_damaging(0.988)
TCGA-KL-8329-01	19	44635141	44635142	-	CAAA	ZNF225	Frame_Shift_Ins	p.D128Tfs*3	0.36		
TCGA-KL-8329-01	19	4534034	4534034	T	C	PLIN5	Missense_Mutation	p.D18G	0.10	tolerated(0.08)	benign(0.004)
TCGA-KL-8329-01	19	51559827	51559827	G	A	KLK13	3'UTR		0.11		
TCGA-KL-8329-01	1	10364647	10364647	G	T	KIF1B	Intron		0.42		
TCGA-KL-8329-01	20	18162415	18162415	T	C	CSRP2BP	Missense_Mutation	p.V578A	0.04	deleterious(0.01)	benign(0.007)
TCGA-KL-8329-01	20	62127325	62127325	C	T	EEF1A2	Missense_Mutation	p.G70S	0.04	deleterious_low_confidence(0)	probably_damaging(0.931)
TCGA-KL-8329-01	21	34134451	34134451	G	T	PAXBP1	Missense_Mutation	p.S276Y	0.31	deleterious(0)	possibly_damaging(0.789)
TCGA-KL-8329-01	21	47705096	47705096	T	A	MCM3AP	Missense_Mutation	p.Q35H	0.13	deleterious(0)	probably_damaging(0.953)
TCGA-KL-8329-01	2	11955246	11955246	G	A	LPIN1	Missense_Mutation	p.R810H	0.05	deleterious(0)	probably_damaging(1)
TCGA-KL-8329-01	2	99449445	99449445	C	T	KIAA1211L	Silent	p.T85T	0.08		
TCGA-KL-8329-01	3	138724463	138724463	G	A	PRR23A	Silent	p.F216F	0.06		
TCGA-KL-8329-01	3	97888186	97888186	C	G	OR5H15	Missense_Mutation	p.L215V	0.19	tolerated(0.1)	benign(0.17)
TCGA-KL-8329-01	4	155219313	155219313	C	T	DCHS2	Silent	p.S1596S	0.31		
TCGA-KL-8329-01	5	140221090	140221090	C	T	PCDHA8	Missense_Mutation	p.R62C	0.35	deleterious_low_confidence(0)	possibly_damaging(0.836)
TCGA-KL-8329-01	5	77745782	77745782	G	T	SCAMP1	Missense_Mutation	p.V220L	0.38	tolerated(0.24)	benign(0.008)
TCGA-KL-8329-01	6	151671482	151671482	A	G	AKAP12	Silent	p.E652E	0.26		
TCGA-KL-8329-01	6	36652171	36652171	C	A	CDKN1A	Nonsense_Mutation	p.S98*	0.28		
TCGA-KL-8329-01	7	91851360	91851360	T	C	KRIT1	Silent	p.Q473Q	0.11		
TCGA-KL-8329-01	9	100126382	100126382	C	T	CCDC180	Missense_Mutation	p.L1362F	0.34	tolerated(0.43)	possibly_damaging(0.765)
TCGA-KL-8329-01	9	117052528	117052528	C	T	COL27A1	Missense_Mutation	p.R1429W	0.04		unknown(0)
TCGA-KL-8329-01	9	125377830	125377830	C	T	OR1Q1	Missense_Mutation	p.R272C	0.44	tolerated(0.06)	probably_damaging(0.95)
TCGA-KL-8329-01	9	127262905	127262905	G	T	NR5A1	Missense_Mutation	p.Q112K	0.15	tolerated(0.15)	benign(0.028)
TCGA-KL-8329-01	9	26905845	26905845	C	T	PLAA	Missense_Mutation	p.M684I	0.04	tolerated(0.57)	benign(0)
TCGA-KL-8329-01	9	90502738	90502738	G	T	SPATA31E1	Silent	p.L1112L	0.17		
TCGA-KL-8330-01	11	1024889	1024889	C	G	MUC6	Missense_Mutation	p.K1060N	0.46		unknown(0)
TCGA-KL-8330-01	11	102709283	102709283	T	G	MMP3	Silent	p.R410R	0.09		
TCGA-KL-8330-01	11	134214285	134214285	G	T	GLB1L2	Missense_Mutation	p.V97F	0.06	deleterious(0)	probably_damaging(0.996)
TCGA-KL-8330-01	12	113303275	113303275	A	G	RPH3A	Missense_Mutation	p.N96S	0.07	tolerated(1)	benign(0.005)
TCGA-KL-8330-01	12	52760938	52760938	G	A	KRT85	Silent	p.S84S	0.17		
TCGA-KL-8330-01	12	7649507	7649507	G	T	CD163	Missense_Mutation	p.S334Y	0.06	tolerated(0.5)	possibly_damaging(0.865)
TCGA-KL-8330-01	15	52562050	52562050	G	A	MYO5C	Silent	p.A280A	0.18		
TCGA-KL-8330-01	16	67911568	67911568	G	C	EDC4	Intron		0.45		
TCGA-KL-8330-01	16	84024120	84024120	G	A	NECAB2	Missense_Mutation	p.V161M	0.05	tolerated(0.15)	probably_damaging(0.939)
TCGA-KL-8330-01	17	1631693	1631693	A	G	WDR81	Missense_Mutation	p.K1147R	0.14	deleterious(0.03)	probably_damaging(0.999)
TCGA-KL-8330-01	17	37331681	37331681	T	C	CACNB1	Missense_Mutation	p.D521G	0.08	tolerated_low_confidence(0.1)	probably_damaging(0.989)
TCGA-KL-8330-01	1	120462211	120462211	A	G	NOTCH2	Silent	p.A1835A	0.06		
TCGA-KL-8330-01	1	2235813	2235813	G	T	SKI	Missense_Mutation	p.R519L	0.46	tolerated(0.34)	benign(0)
TCGA-KL-8330-01	2	210683986	210683986	G	T	UNC80	Splice_Site	p.X654_splice	0.38		
TCGA-KL-8330-01	2	224462648	224462648	C	T	SCG2	Silent	p.S451S	0.46		
TCGA-KL-8330-01	2	27607890	27607890	G	A	PPM1G	Missense_Mutation	p.R159C	0.90	deleterious(0)	possibly_damaging(0.689)
TCGA-KL-8330-01	2	71192114	71192114	G	A	ATP6V1B1	Missense_Mutation	p.E469K	0.84	deleterious(0.02)	possibly_damaging(0.619)
TCGA-KL-8330-01	3	133098856	133098856	G	A	TMEM108	Missense_Mutation	p.A101T	0.04	tolerated_low_confidence(0.23)	benign(0.078)
TCGA-KL-8330-01	3	44488434	44488434	G	C	ZNF445	Missense_Mutation	p.T910S	0.45	tolerated(0.11)	possibly_damaging(0.621)
TCGA-KL-8330-01	4	114275928	114275928	C	T	ANK2	Nonsense_Mutation	p.R2052*	0.15		
TCGA-KL-8330-01	4	40438607	40438608	-	T	RBM47	Frame_Shift_Ins	p.R394Kfs*16	0.25		
TCGA-KL-8330-01	4	47597645	47597645	G	A	CORIN	3'UTR		0.11		
TCGA-KL-8330-01	4	69978239	69978239	C	T	UGT2B7	Nonsense_Mutation	p.R459*	0.47		
TCGA-KL-8330-01	4	71588442	71588442	C	A	RUFY3	Missense_Mutation	p.T51K	0.14	deleterious(0.03)	possibly_damaging(0.824)
TCGA-KL-8330-01	5	140857474	140857474	C	T	PCDHGC3	Silent	p.D597D	0.30		
TCGA-KL-8330-01	6	56417258	56417258	T	A	DST	Missense_Mutation	p.K2821N	0.18		benign(0.419)
TCGA-KL-8330-01	7	111368593	111368593	C	G	DOCK4	Missense_Mutation	p.V1880L	0.20	tolerated_low_confidence(0.7)	benign(0.001)
TCGA-KL-8330-01	8	145661996	145661996	C	T	TONSL	Silent	p.T653T	0.08		
TCGA-KL-8330-01	9	88937294	88937294	G	A	ZCCHC6	Missense_Mutation	p.P992S	0.44	deleterious(0)	benign(0.206)
TCGA-KL-8330-01	X	122759902	122759902	G	A	THOC2	Missense_Mutation	p.T973I	0.90	deleterious(0)	benign(0.374)
TCGA-KL-8330-01	X	149764981	149764981	A	G	MTM1	Missense_Mutation	p.N28S	0.12	tolerated(0.18)	benign(0.001)
TCGA-KL-8331-01	10	124399735	124399735	C	T	DMBT1	Silent	p.V2245V	0.59		
TCGA-KL-8331-01	10	94071001	94071001	C	T	MARCH5	Missense_Mutation	p.R49C	0.15	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8331-01	12	53517645	53517645	C	T	SOAT2	Silent	p.C502C	0.28		
TCGA-KL-8331-01	12	8759502	8759502	C	T	AICDA	Missense_Mutation	p.A39T	0.15	tolerated(0.49)	benign(0.226)
TCGA-KL-8331-01	13	28840991	28840991	A	G	PAN3	Silent	p.P517P	0.56		
TCGA-KL-8331-01	14	24550421	24550421	A	C	NRL	3'UTR		0.41		
TCGA-KL-8331-01	14	53175080	53175080	C	G	PSMC6	Missense_Mutation	p.L61V	0.31	tolerated(0.11)	benign(0.251)
TCGA-KL-8331-01	16	69786144	69786144	C	T	NOB1	Silent	p.K109K	0.43		
TCGA-KL-8331-01	16	82132089	82132089	A	G	HSD17B2	3'UTR		0.07		
TCGA-KL-8331-01	16	89650494	89650494	G	A	CPNE7	Missense_Mutation	p.R239K	0.31	tolerated(0.44)	benign(0.029)
TCGA-KL-8331-01	17	19823386	19823386	T	C	AKAP10	Silent	p.R599R	0.91		
TCGA-KL-8331-01	19	16212306	16212306	G	A	TPM4	3'UTR		0.05		
TCGA-KL-8331-01	19	51828628	51828628	G	A	IGLON5	Silent	p.S140S	0.51		
TCGA-KL-8331-01	1	13839511	13839511	T	C	LRRC38	Missense_Mutation	p.D193G	0.18	tolerated(0.05)	benign(0.079)
TCGA-KL-8331-01	20	46266522	46266522	C	A	NCOA3	Missense_Mutation	p.S836Y	0.31	tolerated(0.28)	possibly_damaging(0.62)
TCGA-KL-8331-01	20	57768140	57768140	C	T	ZNF831	Missense_Mutation	p.T689M	0.45	deleterious(0.01)	benign(0.266)
TCGA-KL-8331-01	21	30963507	30963507	C	T	GRIK1	Silent	p.T430T	0.62		
TCGA-KL-8331-01	2	130832597	130832597	G	A	POTEF	Silent	p.R816R	0.12		
TCGA-KL-8331-01	2	166211041	166211041	G	A	SCN2A	Missense_Mutation	p.V1087M	0.09	tolerated(0.6)	benign(0.01)
TCGA-KL-8331-01	4	155529663	155529663	G	A	FGG	Missense_Mutation	p.P269L	0.32	deleterious(0)	probably_damaging(1)
TCGA-KL-8331-01	5	82937410	82937410	G	A	HAPLN1	Missense_Mutation	p.R324C	0.49	deleterious(0)	probably_damaging(0.979)
TCGA-KL-8331-01	6	30623374	30623374	C	T	DHX16	Silent	p.K833K	0.94		
TCGA-KL-8331-01	6	32052298	32052298	G	A	TNXB	Missense_Mutation	p.R1113C	0.46		probably_damaging(0.997)
TCGA-KL-8331-01	6	36652011	36652012	-	C	CDKN1A	Frame_Shift_Ins	p.R46Pfs*2	0.56		
TCGA-KL-8331-01	7	121699937	121699937	G	T	PTPRZ1	Missense_Mutation	p.D2268Y	0.38	deleterious(0)	probably_damaging(0.909)
TCGA-KL-8331-01	7	150921103	150921103	G	T	ABCF2	Missense_Mutation	p.D155E	0.50	tolerated(0.46)	benign(0.011)
TCGA-KL-8331-01	7	5342510	5342510	C	T	SLC29A4	Silent	p.D511D	0.48		
TCGA-KL-8331-01	7	86479790	86479790	G	T	GRM3	Missense_Mutation	p.K832N	0.37	deleterious(0.01)	probably_damaging(0.989)
TCGA-KL-8331-01	7	95024006	95024006	C	T	PON3	Missense_Mutation	p.R32Q	0.26	deleterious(0.04)	benign(0.003)
TCGA-KL-8331-01	8	10467237	10467237	G	T	RP1L1	Silent	p.L1457L	0.26		
TCGA-KL-8331-01	8	57876349	57876349	T	A	IMPAD1	3'UTR		0.05		
TCGA-KL-8331-01	9	3225028	3225028	C	T	RFX3	3'UTR		0.44		
TCGA-KL-8331-01	9	75309495	75309495	G	A	TMC1	Missense_Mutation	p.R34Q	0.49	tolerated_low_confidence(0.16)	possibly_damaging(0.602)
TCGA-KL-8331-01	X	132091342	132091342	C	A	HS6ST2	Missense_Mutation	p.M147I	0.44	deleterious_low_confidence(0)	benign(0.05)
TCGA-KL-8331-01	X	151303811	151303811	G	A	MAGEA10	Silent	p.P94P	0.41		
TCGA-KL-8331-01	X	152091354	152091354	G	T	ZNF185	Splice_Site	p.X276_splice	0.39		
TCGA-KL-8331-01	X	99661925	99661925	G	A	PCDH19	Silent	p.N557N	0.27		
TCGA-KL-8332-01	11	12316009	12316009	G	A	MICALCL	Missense_Mutation	p.R344H	0.17	tolerated(0.14)	benign(0.03)
TCGA-KL-8332-01	11	7111753	7111753	G	A	RBMXL2	3'UTR		0.32		
TCGA-KL-8332-01	12	48189416	48189416	G	-	HDAC7	Frame_Shift_Del	p.I348Ffs*14	0.24		
TCGA-KL-8332-01	12	53449591	53449591	C	G	TENC1	Missense_Mutation	p.I251M	0.35	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8332-01	16	18820738	18820738	A	T	SMG1	3'UTR		0.40		
TCGA-KL-8332-01	16	24582960	24582960	G	-	RBBP6	Frame_Shift_Del	p.G1525Efs*37	0.28		
TCGA-KL-8332-01	16	50348998	50348998	T	A	ADCY7	Silent	p.T1015T	0.15		
TCGA-KL-8332-01	19	53059406	53059406	T	G	ZNF808	3'UTR		0.18		
TCGA-KL-8332-01	1	117491967	117491967	G	A	PTGFRN	Missense_Mutation	p.R329H	0.06	tolerated(0.34)	benign(0.004)
TCGA-KL-8332-01	1	156622489	156622489	G	A	BCAN	Missense_Mutation	p.E583K	0.07	tolerated(0.19)	possibly_damaging(0.654)
TCGA-KL-8332-01	1	22176895	22176895	A	T	HSPG2	Missense_Mutation	p.S2419T	0.51		probably_damaging(0.998)
TCGA-KL-8332-01	1	32280705	32280705	T	C	SPOCD1	Missense_Mutation	p.E77G	0.11	tolerated(0.46)	benign(0)
TCGA-KL-8332-01	1	63005305	63005305	T	A	DOCK7	Missense_Mutation	p.N1040Y	0.05	deleterious(0)	probably_damaging(0.996)
TCGA-KL-8332-01	20	8770880	8770880	G	A	PLCB1	Missense_Mutation	p.R1132H	0.13	deleterious(0)	probably_damaging(0.946)
TCGA-KL-8332-01	22	32831775	32831775	A	T	BPIFC	Silent	p.I280I	0.50		
TCGA-KL-8332-01	2	131813240	131813240	C	T	FAM168B	Silent	p.V61V	0.61		
TCGA-KL-8332-01	2	216946400	216946400	A	C	PECR	Missense_Mutation	p.I22S	0.05	deleterious(0)	probably_damaging(0.963)
TCGA-KL-8332-01	2	38224599	38224599	C	T	RMDN2	Missense_Mutation	p.T507I	0.15	deleterious(0)	possibly_damaging(0.891)
TCGA-KL-8332-01	2	64111166	64111166	A	-	UGP2	Frame_Shift_Del	p.I174Yfs*10	0.09		
TCGA-KL-8332-01	3	126220079	126220079	C	T	UROC1	Missense_Mutation	p.G376D	0.44	deleterious(0)	probably_damaging(1)
TCGA-KL-8332-01	3	37360554	37360554	A	T	GOLGA4	Nonsense_Mutation	p.K494*	0.08		
TCGA-KL-8332-01	4	113565882	113565883	-	A	LARP7	Frame_Shift_Ins	p.E29Rfs*3	0.28		
TCGA-KL-8332-01	5	1208864	1208864	C	T	SLC6A19	Missense_Mutation	p.A69V	0.04	deleterious(0.01)	benign(0.424)
TCGA-KL-8332-01	5	256467	256467	C	G	SDHA	Missense_Mutation	p.P643A	0.07	tolerated_low_confidence(0.08)	benign(0.01)
TCGA-KL-8332-01	6	127771251	127771252	-	T	KIAA0408	Frame_Shift_Ins	p.S128Ifs*18	0.23		
TCGA-KL-8332-01	6	30889464	30889464	G	C	VARS2	Missense_Mutation	p.E607D	0.11	tolerated(0.1)	benign(0.02)
TCGA-KL-8332-01	9	428491	428491	G	A	DOCK8	Missense_Mutation	p.A1490T	0.06	tolerated(0.61)	benign(0.331)
TCGA-KL-8332-01	X	152159197	152159197	G	A	PNMA5	Missense_Mutation	p.P316S	0.36	deleterious(0)	probably_damaging(1)
TCGA-KL-8333-01	10	105362429	105362429	C	T	SH3PXD2A	Missense_Mutation	p.S821N	0.06	tolerated(0.27)	possibly_damaging(0.611)
TCGA-KL-8333-01	11	130332481	130332500	CTGGCTTTTGGCGTGGGCTC	-	ADAMTS15	Frame_Shift_Del	p.L450Qfs*129	0.16		
TCGA-KL-8333-01	11	6341681	6341681	C	T	PRKCDBP	Missense_Mutation	p.G9E	0.24	deleterious(0)	probably_damaging(0.913)
TCGA-KL-8333-01	11	76804733	76804733	C	T	CAPN5	Silent	p.I57I	0.09		
TCGA-KL-8333-01	15	50838846	50838846	T	C	USP50	5'UTR		0.09		
TCGA-KL-8333-01	15	55731737	55731737	C	A	DYX1C1	Missense_Mutation	p.D276Y	0.06	deleterious(0.01)	benign(0.111)
TCGA-KL-8333-01	17	56448329	56448329	G	T	RNF43	Silent	p.I106I	0.12		
TCGA-KL-8333-01	19	22574547	22574547	T	A	ZNF98	Missense_Mutation	p.K497I	0.03	deleterious(0.01)	probably_damaging(0.991)
TCGA-KL-8333-01	1	109840181	109840181	C	T	MYBPHL	Missense_Mutation	p.R98H	0.06	tolerated(0.17)	benign(0.044)
TCGA-KL-8333-01	1	248343636	248343636	G	C	OR2M2	Missense_Mutation	p.V117L	0.04	tolerated(1)	benign(0.012)
TCGA-KL-8333-01	1	36643614	36643614	G	A	MAP7D1	Missense_Mutation	p.R507Q	0.13		probably_damaging(0.997)
TCGA-KL-8333-01	1	78338746	78338746	C	G	FAM73A	Missense_Mutation	p.L541V	0.04	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8333-01	2	169842725	169842725	A	C	ABCB11	Silent	p.T326T	0.06		
TCGA-KL-8333-01	2	206037069	206037069	G	A	PARD3B	Silent	p.Q523Q	0.06		
TCGA-KL-8333-01	2	237074936	237074936	T	C	GBX2	Missense_Mutation	p.D223G	0.10	tolerated(0.21)	benign(0.005)
TCGA-KL-8333-01	2	61245451	61245451	A	G	PEX13	Intron		0.10		
TCGA-KL-8333-01	3	51429336	51429336	T	C	RBM15B	Missense_Mutation	p.I169T	0.14	deleterious(0)	benign(0.057)
TCGA-KL-8333-01	4	1821161	1821161	G	A	LETM1	Silent	p.S549S	0.20		
TCGA-KL-8333-01	4	1821162	1821162	C	G	LETM1	Missense_Mutation	p.S549T	0.21	deleterious(0.02)	possibly_damaging(0.67)
TCGA-KL-8333-01	4	41988254	41988254	A	T	DCAF4L1	3'UTR		0.08		
TCGA-KL-8333-01	6	2948452	2948452	A	G	SERPINB6	3'UTR		0.09		
TCGA-KL-8333-01	8	125074107	125074107	C	T	FER1L6	Silent	p.N1054N	0.15		
TCGA-KL-8333-01	9	134074387	134074387	T	C	NUP214	Missense_Mutation	p.F1836L	0.08		possibly_damaging(0.682)
TCGA-KL-8333-01	X	47062169	47062169	A	G	UBA1	Missense_Mutation	p.I397V	0.11	tolerated(0.37)	benign(0.001)
TCGA-KL-8333-01	X	71549655	71549655	T	-	HDAC8	3'UTR		0.11		
TCGA-KL-8334-01	10	30317404	30317404	A	G	KIAA1462	Missense_Mutation	p.L558P	0.10	deleterious(0.03)	possibly_damaging(0.727)
TCGA-KL-8334-01	11	111250077	111250077	T	C	POU2AF1	5'UTR		0.07		
TCGA-KL-8334-01	12	100377920	100377920	G	A	ANKS1B	Silent	p.G32G	0.38		
TCGA-KL-8334-01	15	79060504	79060504	C	-	ADAMTS7	Frame_Shift_Del	p.K873Sfs*84	0.18		
TCGA-KL-8334-01	16	2547069	2547069	A	G	RP11-20I23.1	Missense_Mutation	p.N307S	0.33	deleterious(0.04)	probably_damaging(0.997)
TCGA-KL-8334-01	17	46654334	46654334	T	A	HOXB4	Missense_Mutation	p.Y169F	0.77	deleterious(0)	probably_damaging(1)
TCGA-KL-8334-01	18	29511428	29511428	T	C	TRAPPC8	Silent	p.V72V	0.42		
TCGA-KL-8334-01	19	2207667	2207667	C	T	DOT1L	Silent	p.I317I	0.34		
TCGA-KL-8334-01	19	33697008	33697008	C	T	LRP3	Silent	p.P444P	0.06		
TCGA-KL-8334-01	1	120457881	120457881	C	T	NOTCH2	3'UTR		0.12		
TCGA-KL-8334-01	1	228582602	228582602	A	G	TRIM11	Missense_Mutation	p.V404A	0.60	deleterious(0)	possibly_damaging(0.798)
TCGA-KL-8334-01	2	223919557	223919557	T	A	KCNE4	3'UTR		0.59		
TCGA-KL-8334-01	3	124201729	124201729	A	T	KALRN	Missense_Mutation	p.K1420N	0.36	deleterious(0)	probably_damaging(1)
TCGA-KL-8334-01	3	134873005	134873005	G	A	EPHB1	Missense_Mutation	p.V437I	0.44	tolerated(0.18)	benign(0.376)
TCGA-KL-8334-01	3	28365568	28365568	C	T	AZI2	Missense_Mutation	p.D382N	0.35	deleterious_low_confidence(0.01)	probably_damaging(0.981)
TCGA-KL-8334-01	6	36759870	36759870	A	G	CPNE5	Silent	p.G156G	0.12		
TCGA-KL-8334-01	6	99852539	99852539	C	T	PNISR	Missense_Mutation	p.D348N	0.05	deleterious(0.01)	possibly_damaging(0.852)
TCGA-KL-8334-01	7	82389952	82389952	T	C	PCLO	Intron		0.38		
TCGA-KL-8334-01	X	41088984	41088985	-	A	USP9X	Frame_Shift_Ins	p.S2462Kfs*3	0.35		
TCGA-KL-8335-01	10	102827523	102827523	G	A	KAZALD1	3'Flank		0.33		
TCGA-KL-8335-01	10	106970992	106970992	T	C	SORCS3	Missense_Mutation	p.Y787H	0.04	deleterious(0.01)	benign(0.321)
TCGA-KL-8335-01	10	50015972	50015972	A	G	WDFY4	Missense_Mutation	p.I1603V	0.06	tolerated(0.33)	benign(0.003)
TCGA-KL-8335-01	10	5254675	5254675	C	T	AKR1C4	Nonsense_Mutation	p.R223*	0.10		
TCGA-KL-8335-01	10	64136341	64136341	C	A	ZNF365	Missense_Mutation	p.T130N	0.56	tolerated_low_confidence(0.15)	possibly_damaging(0.528)
TCGA-KL-8335-01	11	49175930	49175930	G	A	FOLH1	Nonsense_Mutation	p.R580*	0.41		
TCGA-KL-8335-01	11	57886020	57886020	G	A	OR9I1	Silent	p.D299D	0.40		
TCGA-KL-8335-01	11	62417411	62417411	G	A	INTS5	Silent	p.G47G	0.37		
TCGA-KL-8335-01	11	67022407	67022407	A	T	KDM2A	Missense_Mutation	p.I1124F	0.43	deleterious(0)	possibly_damaging(0.67)
TCGA-KL-8335-01	11	73360070	73360070	C	A	PLEKHB1	Missense_Mutation	p.S11Y	0.42	tolerated_low_confidence(0.08)	benign(0.22)
TCGA-KL-8335-01	12	130649929	130649929	C	A	FZD10	3'UTR		0.51		
TCGA-KL-8335-01	12	20522512	20522512	G	A	PDE3A	Silent	p.A98A	0.32		
TCGA-KL-8335-01	12	56552102	56552102	C	T	MYL6	5'UTR		0.42		
TCGA-KL-8335-01	14	105394159	105394159	G	T	PLD4	Missense_Mutation	p.W80C	0.35	tolerated(0.11)	possibly_damaging(0.619)
TCGA-KL-8335-01	14	31355089	31355089	C	G	COCH	Missense_Mutation	p.L350V	0.44	tolerated(1)	probably_damaging(0.991)
TCGA-KL-8335-01	14	51375670	51375670	G	A	PYGL	Silent	p.Y727Y	0.04		
TCGA-KL-8335-01	15	26825479	26825479	A	T	GABRB3	Silent	p.V223V	0.40		
TCGA-KL-8335-01	15	41063402	41063402	C	T	C15orf62	3'UTR		0.43		
TCGA-KL-8335-01	15	73617514	73617514	C	T	HCN4	Missense_Mutation	p.R587Q	0.37	deleterious(0)	unknown(0)
TCGA-KL-8335-01	16	3064281	3064281	G	A	CLDN9	3'UTR		0.05		
TCGA-KL-8335-01	16	7383011	7383011	G	A	RBFOX1	Silent	p.A3A	0.45		
TCGA-KL-8335-01	16	84132706	84132706	G	A	MBTPS1	Missense_Mutation	p.R125W	0.05	deleterious(0.01)	possibly_damaging(0.8)
TCGA-KL-8335-01	17	6606363	6606363	G	T	SLC13A5	Nonsense_Mutation	p.Y214*	0.09		
TCGA-KL-8335-01	17	7577018	7577018	C	T	TP53	Splice_Site	p.X307_splice	0.74		
TCGA-KL-8335-01	19	31770165	31770165	C	A	TSHZ3	Missense_Mutation	p.Q178H	0.42	tolerated(0.09)	probably_damaging(0.997)
TCGA-KL-8335-01	19	36342723	36342723	G	A	NPHS1	Missense_Mutation	p.T6M	0.41	tolerated_low_confidence(0.38)	unknown(0)
TCGA-KL-8335-01	19	36884930	36884930	C	T	ZFP82	Missense_Mutation	p.M104I	0.07	tolerated(0.2)	benign(0.003)
TCGA-KL-8335-01	19	37006030	37006030	G	A	ZNF260	Silent	p.S37S	0.42		
TCGA-KL-8335-01	19	41628786	41628786	C	A	CYP2F1	Missense_Mutation	p.N294K	0.39	deleterious(0)	probably_damaging(0.985)
TCGA-KL-8335-01	19	50491597	50491597	C	A	VRK3	Intron		0.37		
TCGA-KL-8335-01	19	56373450	56373450	C	T	NLRP4	Missense_Mutation	p.T704M	0.09	deleterious(0.04)	possibly_damaging(0.791)
TCGA-KL-8335-01	1	1229272	1229272	G	A	ACAP3	Missense_Mutation	p.A764V	0.12	tolerated(0.07)	benign(0.05)
TCGA-KL-8335-01	1	145698662	145698662	T	C	CD160	Intron		0.90		
TCGA-KL-8335-01	1	171890935	171890935	T	C	DNM3	Missense_Mutation	p.V70A	0.72	deleterious(0)	probably_damaging(0.96)
TCGA-KL-8335-01	1	225755060	225755060	T	A	ENAH	Missense_Mutation	p.K21M	0.05	deleterious(0)	unknown(0)
TCGA-KL-8335-01	1	55505643	55505643	T	C	PCSK9	Silent	p.L45L	0.16		
TCGA-KL-8335-01	1	77759511	77759511	G	A	AK5	Missense_Mutation	p.R94Q	0.71	deleterious(0.01)	probably_damaging(0.964)
TCGA-KL-8335-01	20	57767954	57767954	C	T	ZNF831	Missense_Mutation	p.T627M	0.13	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8335-01	21	39755470	39755470	G	A	ERG	Missense_Mutation	p.A439V	0.45	tolerated(0.4)	benign(0.018)
TCGA-KL-8335-01	21	45987842	45987842	C	T	TSPEAR	Missense_Mutation	p.A44T	0.08	tolerated(0.39)	benign(0.003)
TCGA-KL-8335-01	22	40802519	40802519	C	T	SGSM3	Silent	p.D346D	0.40		
TCGA-KL-8335-01	2	179403401	179403401	C	T	TTN	Missense_Mutation	p.R33052H	0.07		
TCGA-KL-8335-01	2	220473923	220473923	C	T	STK11IP	Silent	p.H649H	0.05		
TCGA-KL-8335-01	2	242178175	242178175	T	C	HDLBP	Missense_Mutation	p.I880V	0.77	tolerated(0.08)	possibly_damaging(0.478)
TCGA-KL-8335-01	2	71366962	71366963	-	AGG	MPHOSPH10	In_Frame_Ins	p.E426_D427insR	0.64		
TCGA-KL-8335-01	2	74734182	74734183	CT	-	PCGF1	Frame_Shift_Del	p.E62Vfs*17	0.49		
TCGA-KL-8335-01	2	85573123	85573123	C	A	RETSAT	Silent	p.L364L	0.71		
TCGA-KL-8335-01	3	101573954	101573954	G	T	NFKBIZ	Missense_Mutation	p.D498Y	0.16	deleterious(0.02)	possibly_damaging(0.791)
TCGA-KL-8335-01	3	113375944	113375944	G	C	KIAA2018	Missense_Mutation	p.Q1529E	0.19		benign(0.159)
TCGA-KL-8335-01	3	139171911	139171911	G	T	RBP2	3'UTR		0.34		
TCGA-KL-8335-01	3	35833882	35833882	C	A	ARPP21	Missense_Mutation	p.P682T	0.05	tolerated(0.42)	benign(0.127)
TCGA-KL-8335-01	4	104101509	104101509	G	C	CENPE	Missense_Mutation	p.L401V	0.16		probably_damaging(0.997)
TCGA-KL-8335-01	5	145598649	145598649	A	T	RBM27	Missense_Mutation	p.D54V	0.29	deleterious(0)	possibly_damaging(0.72)
TCGA-KL-8335-01	5	148521363	148521363	C	T	ABLIM3	5'UTR		0.56		
TCGA-KL-8335-01	5	5489408	5489408	G	T	KIAA0947	Nonsense_Mutation	p.E2256*	0.47		
TCGA-KL-8335-01	5	61699551	61699570	CCTGCCGCCCGCGGCGGCGG	-	DIMT1	Frame_Shift_Del	p.R11Afs*29	0.41		
TCGA-KL-8335-01	6	119345242	119345242	C	T	FAM184A	Missense_Mutation	p.R299Q	0.66	tolerated(1)	benign(0.056)
TCGA-KL-8335-01	7	120496869	120496869	A	T	TSPAN12	5'UTR		0.36		
TCGA-KL-8335-01	7	120496873	120496873	C	A	TSPAN12	5'UTR		0.33		
TCGA-KL-8335-01	7	134617794	134617794	G	T	CALD1	Missense_Mutation	p.D92Y	0.36	deleterious(0)	unknown(0)
TCGA-KL-8335-01	7	143095693	143095693	C	-	EPHA1	Splice_Site	p.X446_splice	0.31		
TCGA-KL-8335-01	8	27144933	27144933	A	G	TRIM35	3'UTR		0.10		
TCGA-KL-8335-01	9	109689044	109689044	G	A	ZNF462	Missense_Mutation	p.V951M	0.19		probably_damaging(0.997)
TCGA-KL-8335-01	9	109691641	109691641	G	A	ZNF462	Silent	p.E1816E	0.16		
TCGA-KL-8335-01	9	115806036	115806036	C	A	ZFP37	Missense_Mutation	p.A288S	0.06	tolerated(0.12)	benign(0.156)
TCGA-KL-8335-01	9	123476127	123476127	G	A	MEGF9	Silent	p.P170P	0.21		
TCGA-KL-8335-01	9	75783993	75783993	C	T	ANXA1	Missense_Mutation	p.R303C	0.37	deleterious(0.01)	probably_damaging(0.999)
TCGA-KL-8336-01	10	75331190	75331190	A	C	USP54	Missense_Mutation	p.C77G	0.59	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8336-01	10	89711960	89711962	TGT	-	PTEN	In_Frame_Del	p.L194del	0.85		
TCGA-KL-8336-01	11	6007311	6007311	G	A	OR52L1	Missense_Mutation	p.H284Y	0.06	deleterious(0.01)	possibly_damaging(0.663)
TCGA-KL-8336-01	11	6477762	6477762	C	A	TRIM3	Silent	p.L398L	0.46		
TCGA-KL-8336-01	11	78277251	78277251	C	T	NARS2	Missense_Mutation	p.C147Y	0.51	tolerated(0.1)	probably_damaging(0.979)
TCGA-KL-8336-01	12	105198866	105198866	A	G	SLC41A2	3'UTR		0.09		
TCGA-KL-8336-01	12	52774146	52774146	C	T	KRT84	Splice_Site	p.X475_splice	0.46		
TCGA-KL-8336-01	15	42003374	42003374	C	T	MGA	Missense_Mutation	p.R971W	0.45	deleterious(0)	probably_damaging(0.993)
TCGA-KL-8336-01	16	30596805	30596805	C	T	ZNF785	Nonsense_Mutation	p.W43*	0.13		
TCGA-KL-8336-01	17	21731747	21731747	G	A	UBBP4	3'Flank		0.56		
TCGA-KL-8336-01	17	7578455	7578455	C	G	TP53	Missense_Mutation	p.A159P	0.77	deleterious(0)	probably_damaging(0.991)
TCGA-KL-8336-01	18	28611062	28611062	C	A	DSC3	Silent	p.G77G	0.79		
TCGA-KL-8336-01	18	42456842	42456842	C	T	SETBP1	Intron		0.09		
TCGA-KL-8336-01	19	52660631	52660631	C	T	ZNF836	Nonsense_Mutation	p.W102*	0.39		
TCGA-KL-8336-01	1	159023498	159023498	T	C	IFI16	Missense_Mutation	p.I698T	0.09	tolerated(0.22)	benign(0.003)
TCGA-KL-8336-01	1	247695452	247695452	T	C	OR2C3	Missense_Mutation	p.Y121C	0.75	deleterious(0.01)	benign(0.018)
TCGA-KL-8336-01	1	7887260	7887260	C	G	PER3	Missense_Mutation	p.D749E	0.65	tolerated(0.4)	benign(0.005)
TCGA-KL-8336-01	22	37769035	37769035	G	A	ELFN2	3'UTR		0.80		
TCGA-KL-8336-01	2	215812198	215812198	C	T	ABCA12	Missense_Mutation	p.R2396K	0.68	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8336-01	2	97034713	97034713	A	G	NCAPH	Missense_Mutation	p.N668D	0.09	tolerated(0.45)	benign(0.01)
TCGA-KL-8336-01	3	131221710	131221710	C	T	MRPL3	5'UTR		0.20		
TCGA-KL-8336-01	3	49114159	49114159	G	C	QRICH1	Missense_Mutation	p.Q98E	0.39	tolerated_low_confidence(0.1)	benign(0.042)
TCGA-KL-8336-01	4	126337737	126337737	A	C	FAT4	Silent	p.T2326T	0.22		
TCGA-KL-8336-01	5	114462155	114462155	T	C	TRIM36	3'UTR		0.07		
TCGA-KL-8336-01	5	179200955	179200955	C	T	MAML1	Nonsense_Mutation	p.R710*	0.06		
TCGA-KL-8336-01	5	31318111	31318111	C	T	CDH6	Intron		0.14		
TCGA-KL-8336-01	5	37721278	37721278	G	T	WDR70	Missense_Mutation	p.G493V	0.33	deleterious(0)	probably_damaging(0.997)
TCGA-KL-8336-01	5	37721279	37721279	A	G	WDR70	Silent	p.G493G	0.34		
TCGA-KL-8336-01	6	152623086	152623086	T	C	SYNE1	Missense_Mutation	p.E5820G	0.08		possibly_damaging(0.866)
TCGA-KL-8336-01	6	39867902	39867902	T	C	DAAM2	Missense_Mutation	p.V910A	0.67	deleterious(0.02)	benign(0.093)
TCGA-KL-8336-01	7	87006732	87006732	C	T	CROT	Missense_Mutation	p.S343F	0.13	tolerated(0.74)	benign(0.013)
TCGA-KL-8336-01	8	107670160	107670160	C	A	OXR1	Intron		0.54		
TCGA-KL-8336-01	8	145748410	145748410	A	G	LRRC24	Missense_Mutation	p.F331L	0.13	deleterious(0.01)	possibly_damaging(0.902)
TCGA-KL-8336-01	9	124089710	124089710	T	C	GSN	Missense_Mutation	p.L622P	0.44	deleterious(0.02)	probably_damaging(0.959)
TCGA-KL-8337-01	10	11574261	11574262	-	A	USP6NL	5'UTR		0.11		
TCGA-KL-8337-01	11	2168965	2168965	C	T	INS-IGF2	Silent	p.S160S	0.24		
TCGA-KL-8337-01	11	32635093	32635093	G	A	CCDC73	Missense_Mutation	p.S924L	0.05	tolerated(0.09)	benign(0.059)
TCGA-KL-8337-01	12	70726623	70726623	A	G	CNOT2	Missense_Mutation	p.T216A	0.09	tolerated(0.27)	benign(0.058)
TCGA-KL-8337-01	15	72492092	72492092	C	T	PKM	Missense_Mutation	p.A499T	0.04	tolerated(0.46)	benign(0.005)
TCGA-KL-8337-01	15	90172749	90172749	T	C	KIF7	Missense_Mutation	p.E1125G	0.06	deleterious(0.03)	probably_damaging(0.999)
TCGA-KL-8337-01	16	2813651	2813651	C	A	SRRM2	Missense_Mutation	p.S1041Y	0.26		benign(0.184)
TCGA-KL-8337-01	16	68057078	68057078	A	G	DDX28	Missense_Mutation	p.F10L	0.09	tolerated_low_confidence(1)	benign(0)
TCGA-KL-8337-01	16	81077627	81077627	G	A	ATMIN	Missense_Mutation	p.M508I	0.31	tolerated(0.11)	benign(0.017)
TCGA-KL-8337-01	17	7578370	7578370	C	A	TP53	Splice_Site	p.X187_splice	0.09		
TCGA-KL-8337-01	18	77513733	77513733	C	T	CTDP1	Silent	p.S943S	0.20		
TCGA-KL-8337-01	19	3827541	3827541	G	A	ZFR2	Silent	p.C321C	0.37		
TCGA-KL-8337-01	19	46124887	46124887	G	A	EML2	Missense_Mutation	p.R485C	0.06	deleterious(0.02)	possibly_damaging(0.888)
TCGA-KL-8337-01	19	56321650	56321650	T	G	NLRP11	Missense_Mutation	p.E109A	0.39	deleterious(0.01)	possibly_damaging(0.827)
TCGA-KL-8337-01	1	155002604	155002604	A	G	DCST2	Missense_Mutation	p.V378A	0.51	deleterious(0)	probably_damaging(0.993)
TCGA-KL-8337-01	1	158641982	158641982	T	C	SPTA1	Missense_Mutation	p.E452G	0.15	tolerated(0.31)	benign(0.065)
TCGA-KL-8337-01	1	161161010	161161010	C	T	ADAMTS4	Missense_Mutation	p.R811H	0.33	tolerated(0.12)	benign(0.29)
TCGA-KL-8337-01	1	182572462	182572462	G	T	RGS16	Missense_Mutation	p.F19L	0.12	tolerated(1)	benign(0.004)
TCGA-KL-8337-01	1	247875280	247875280	C	T	OR6F1	Missense_Mutation	p.V260I	0.57	tolerated(0.1)	benign(0.148)
TCGA-KL-8337-01	1	99418744	99418744	G	A	LPPR5	Missense_Mutation	p.T168I	0.05	tolerated(0.51)	benign(0.232)
TCGA-KL-8337-01	2	74043649	74043649	C	A	C2orf78	Missense_Mutation	p.P767T	0.08	tolerated(0.11)	benign(0.023)
TCGA-KL-8337-01	3	133099424	133099424	C	A	TMEM108	Missense_Mutation	p.T290N	0.29	tolerated_low_confidence(0.1)	benign(0.004)
TCGA-KL-8337-01	6	42713337	42713337	G	A	TBCC	Missense_Mutation	p.P159S	0.44	tolerated(0.27)	benign(0.011)
TCGA-KL-8337-01	9	124751435	124751435	C	T	TTLL11	Intron		0.27		
TCGA-KL-8337-01	X	155005347	155005347	G	A	SPRY3	3'UTR		0.21		
TCGA-KL-8338-01	12	107264631	107264631	A	T	RIC8B	Intron		0.44		
TCGA-KL-8338-01	15	40944268	40944268	C	T	CASC5	Missense_Mutation	p.T2153M	0.38	deleterious(0)	probably_damaging(0.97)
TCGA-KL-8338-01	15	45707899	45707899	C	A	SPATA5L1	Missense_Mutation	p.L587I	0.34	deleterious(0.05)	possibly_damaging(0.842)
TCGA-KL-8338-01	17	3655092	3655092	G	A	ITGAE	Missense_Mutation	p.A582V	0.06	deleterious(0.01)	probably_damaging(0.951)
TCGA-KL-8338-01	17	41879208	41879208	A	G	MPP3	Missense_Mutation	p.F540S	0.06	tolerated(0.5)	benign(0.232)
TCGA-KL-8338-01	17	48653145	48653145	G	A	CACNA1G	Missense_Mutation	p.R461Q	0.27	deleterious(0.04)	possibly_damaging(0.493)
TCGA-KL-8338-01	17	7577114	7577114	C	T	TP53	Missense_Mutation	p.C275Y	0.75	deleterious(0)	probably_damaging(0.994)
TCGA-KL-8338-01	19	55824239	55824239	C	T	TMEM150B	Silent	p.P230P	0.43		
TCGA-KL-8338-01	19	5679701	5679701	C	A	C19orf70	Missense_Mutation	p.D35Y	0.43	tolerated(0.11)	benign(0.043)
TCGA-KL-8338-01	1	1425803	1425803	C	T	ATAD3B	Missense_Mutation	p.R502W	0.71	deleterious(0.05)	benign(0.3)
TCGA-KL-8338-01	1	204415184	204415184	C	T	PIK3C2B	Missense_Mutation	p.A860T	0.06	deleterious(0.03)	possibly_damaging(0.474)
TCGA-KL-8338-01	1	22839532	22839532	C	T	ZBTB40	Silent	p.T859T	0.34		
TCGA-KL-8338-01	20	30582940	30582940	C	T	XKR7	Silent	p.Y218Y	0.07		
TCGA-KL-8338-01	20	56735886	56735886	C	T	C20orf85	3'UTR		0.46		
TCGA-KL-8338-01	2	209198216	209198216	A	G	PIKFYVE	Missense_Mutation	p.S1381G	0.10	deleterious(0.02)	possibly_damaging(0.823)
TCGA-KL-8338-01	2	86831681	86831681	T	A	RNF103	Missense_Mutation	p.N448I	0.09	deleterious(0.02)	possibly_damaging(0.547)
TCGA-KL-8338-01	2	89309937	89309937	G	A	IGKV1-9	Silent	p.P6P	0.13		
TCGA-KL-8338-01	3	154033067	154033067	T	A	DHX36	Missense_Mutation	p.Y124F	0.40	tolerated(0.48)	benign(0.001)
TCGA-KL-8338-01	3	179336311	179336311	T	C	NDUFB5	Splice_Site	p.X150_splice	0.38		
TCGA-KL-8338-01	4	73959889	73959889	C	A	ANKRD17	Missense_Mutation	p.G1745V	0.19		possibly_damaging(0.79)
TCGA-KL-8338-01	4	74863781	74863781	G	T	CXCL5	Missense_Mutation	p.L92I	0.10	deleterious(0.02)	possibly_damaging(0.811)
TCGA-KL-8338-01	5	56229122	56229122	T	G	MIER3	Missense_Mutation	p.K233N	0.08	tolerated(0.37)	probably_damaging(0.911)
TCGA-KL-8338-01	5	82841438	82841438	G	T	VCAN	Silent	p.V3116V	0.36		
TCGA-KL-8338-01	7	80458056	80458056	G	A	SEMA3C	Nonsense_Mutation	p.R37*	0.09		
TCGA-KL-8338-01	7	87526607	87526607	A	G	DBF4	Splice_Site	p.X212_splice	0.06		
TCGA-KL-8338-01	7	99084964	99084964	G	A	ZNF789	Silent	p.T377T	0.12		
TCGA-KL-8338-01	8	144671885	144671885	T	C	EEF1D	Missense_Mutation	p.S123G	0.05	deleterious(0.03)	benign(0.146)
TCGA-KL-8338-01	9	139231484	139231484	C	T	GPSM1	Missense_Mutation	p.P178L	0.36	deleterious(0)	probably_damaging(0.973)
TCGA-KL-8338-01	9	19102766	19102766	A	G	HAUS6	5'UTR		0.08		
TCGA-KL-8338-01	X	147924508	147924508	C	T	AFF2	Missense_Mutation	p.P398S	0.13	tolerated(1)	benign(0.19)
TCGA-KL-8339-01	10	70863802	70863802	T	C	SRGN	Missense_Mutation	p.S135P	0.07	tolerated(1)	benign(0.007)
TCGA-KL-8339-01	10	75532602	75532602	T	C	FUT11	Missense_Mutation	p.F171L	0.17	deleterious(0.03)	benign(0.311)
TCGA-KL-8339-01	10	88423471	88423471	G	T	OPN4	Missense_Mutation	p.G448V	0.09	tolerated(0.07)	possibly_damaging(0.631)
TCGA-KL-8339-01	10	99342111	99342111	C	T	ANKRD2	Nonsense_Mutation	p.Q259*	0.13		
TCGA-KL-8339-01	11	28232627	28232627	T	-	METTL15	Frame_Shift_Del	p.F97Lfs*31	0.16		
TCGA-KL-8339-01	11	626499	626499	G	T	SCT	Missense_Mutation	p.L100M	0.21	deleterious_low_confidence(0.04)	possibly_damaging(0.665)
TCGA-KL-8339-01	11	70858242	70858242	G	A	SHANK2	Missense_Mutation	p.P44L	0.31	deleterious(0.05)	probably_damaging(0.913)
TCGA-KL-8339-01	12	113543595	113543595	G	A	RASAL1	Missense_Mutation	p.T586M	0.29	tolerated(0.29)	possibly_damaging(0.88)
TCGA-KL-8339-01	12	2907983	2907983	A	G	FKBP4	Missense_Mutation	p.I169V	0.47	tolerated(0.26)	benign(0)
TCGA-KL-8339-01	12	41967467	41967467	C	A	PDZRN4	Missense_Mutation	p.F962L	0.12	tolerated(0.17)	possibly_damaging(0.625)
TCGA-KL-8339-01	12	53073958	53073958	C	G	KRT1	Missense_Mutation	p.G59R	0.28	deleterious(0.04)	unknown(0)
TCGA-KL-8339-01	13	60240728	60240728	C	T	DIAPH3	Missense_Mutation	p.R1191Q	0.07	deleterious_low_confidence(0)	unknown(0)
TCGA-KL-8339-01	14	24788628	24788628	G	T	ADCY4	Silent	p.P916P	0.09		
TCGA-KL-8339-01	15	53908269	53908269	C	A	WDR72	Missense_Mutation	p.V712F	0.22	tolerated(0.62)	benign(0.001)
TCGA-KL-8339-01	15	73547131	73547131	A	G	NEO1	Missense_Mutation	p.T685A	0.05	tolerated(0.13)	benign(0.001)
TCGA-KL-8339-01	15	73996604	73996604	G	A	CD276	Missense_Mutation	p.R387Q	0.15	tolerated(0.43)	benign(0.121)
TCGA-KL-8339-01	16	30122776	30122776	C	T	GDPD3	Missense_Mutation	p.G214R	0.44	deleterious(0)	probably_damaging(1)
TCGA-KL-8339-01	16	33647509	33647509	C	A	RP11-812E19.9	Missense_Mutation	p.V31L	0.08	deleterious_low_confidence(0.01)	benign(0.096)
TCGA-KL-8339-01	17	26941165	26941165	G	C	RP11-192H23.4	Missense_Mutation	p.S5R	0.91	deleterious_low_confidence(0)	probably_damaging(0.931)
TCGA-KL-8339-01	17	4845935	4845935	C	T	RNF167	Missense_Mutation	p.L119F	0.90	deleterious(0)	probably_damaging(0.996)
TCGA-KL-8339-01	17	6515464	6515464	C	T	KIAA0753	Silent	p.K440K	0.43		
TCGA-KL-8339-01	17	7577094	7577094	G	A	TP53	Missense_Mutation	p.R282W	0.91	deleterious(0)	probably_damaging(0.997)
TCGA-KL-8339-01	18	211193	211193	G	T	USP14	Missense_Mutation	p.R465L	0.45	deleterious(0)	possibly_damaging(0.796)
TCGA-KL-8339-01	18	61654433	61654433	C	A	SERPINB8	Missense_Mutation	p.A349E	0.26	deleterious(0)	probably_damaging(0.99)
TCGA-KL-8339-01	19	45368669	45368669	C	T	PVRL2	Missense_Mutation	p.A77V	0.09	tolerated(0.08)	benign(0.015)
TCGA-KL-8339-01	19	46443970	46443970	G	A	NOVA2	Silent	p.L210L	0.14		
TCGA-KL-8339-01	19	53856300	53856300	C	A	ZNF845	Missense_Mutation	p.A791E	0.47	tolerated(0.55)	benign(0.038)
TCGA-KL-8339-01	1	108303461	108303461	C	T	VAV3	Missense_Mutation	p.R321Q	0.18	tolerated(0.38)	possibly_damaging(0.907)
TCGA-KL-8339-01	1	111494447	111494447	T	C	LRIF1	Silent	p.K353K	0.10		
TCGA-KL-8339-01	1	1391260	1391260	C	T	ATAD3C	Silent	p.Y176Y	0.57		
TCGA-KL-8339-01	1	1647844	1647844	G	A	CDK11A	Silent	p.R143R	0.04		
TCGA-KL-8339-01	21	35476542	35476542	A	G	SLC5A3	3'UTR		0.35		
TCGA-KL-8339-01	22	29956774	29956774	C	T	NIPSNAP1	Missense_Mutation	p.G219S	0.37	deleterious(0.01)	probably_damaging(0.938)
TCGA-KL-8339-01	22	40367136	40367136	G	T	GRAP2	3'UTR		0.32		
TCGA-KL-8339-01	2	11053758	11053758	C	T	KCNF1	Silent	p.I402I	0.88		
TCGA-KL-8339-01	2	129025737	129025737	T	A	HS6ST1	Nonstop_Mutation	p.*412Lext*30	0.12		
TCGA-KL-8339-01	2	218940146	218940146	G	C	RUFY4	Missense_Mutation	p.G331R	0.47	deleterious(0.04)	probably_damaging(0.941)
TCGA-KL-8339-01	2	239147555	239147555	A	G	HES6	Silent	p.A196A	0.91		
TCGA-KL-8339-01	2	24480957	24480957	T	C	ITSN2	Silent	p.Q896Q	0.08		
TCGA-KL-8339-01	2	43453470	43453470	A	T	ZFP36L2	5'UTR		0.91		
TCGA-KL-8339-01	3	27763289	27763289	T	C	EOMES	Missense_Mutation	p.Q166R	0.20	tolerated(0.06)	benign(0.021)
TCGA-KL-8339-01	3	38739683	38739683	G	T	SCN10A	Silent	p.P1676P	0.07		
TCGA-KL-8339-01	3	42733371	42733371	C	A	KLHL40	Intron		0.40		
TCGA-KL-8339-01	3	46784475	46784475	G	T	PRSS45	Missense_Mutation	p.F127L	0.14	tolerated(0.61)	benign(0.001)
TCGA-KL-8339-01	3	49755708	49755708	G	A	AMIGO3	Silent	p.L397L	0.21		
TCGA-KL-8339-01	3	73657758	73657758	C	G	PDZRN3	Silent	p.R267R	0.46		
TCGA-KL-8339-01	4	118975028	118975028	G	T	NDST3	5'UTR		0.21		
TCGA-KL-8339-01	4	162697068	162697068	C	T	FSTL5	Missense_Mutation	p.D190N	0.43	tolerated(0.74)	benign(0.174)
TCGA-KL-8339-01	4	187073069	187073069	G	A	FAM149A	5'UTR		0.19		
TCGA-KL-8339-01	4	44177218	44177218	T	G	KCTD8	Missense_Mutation	p.K337N	0.11	tolerated(0.19)	benign(0.08)
TCGA-KL-8339-01	4	56319289	56319289	C	A	CLOCK	Nonsense_Mutation	p.E380*	0.22		
TCGA-KL-8339-01	4	8294059	8294059	C	T	HTRA3	Silent	p.S305S	0.05		
TCGA-KL-8339-01	5	121413160	121413160	G	A	LOX	Missense_Mutation	p.P174L	0.19	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8339-01	5	132534972	132534972	C	A	FSTL4	Missense_Mutation	p.A782S	0.13	tolerated(0.71)	benign(0.004)
TCGA-KL-8339-01	5	134871070	134871070	C	A	NEUROG1	Missense_Mutation	p.R104L	0.16	deleterious(0)	probably_damaging(1)
TCGA-KL-8339-01	5	145838659	145838659	C	T	TCERG1	Silent	p.A217A	0.56		
TCGA-KL-8339-01	5	79039710	79039710	G	A	CMYA5	Missense_Mutation	p.V3567I	0.19		probably_damaging(0.995)
TCGA-KL-8339-01	6	133105219	133105219	C	G	SLC18B1	Missense_Mutation	p.E171Q	0.15	deleterious(0)	probably_damaging(1)
TCGA-KL-8339-01	6	27861260	27861260	C	G	HIST1H2BO	Missense_Mutation	p.S7C	0.09	deleterious_low_confidence(0)	unknown(0)
TCGA-KL-8339-01	7	123254584	123254584	G	C	ASB15	Missense_Mutation	p.D10H	0.45	deleterious(0)	probably_damaging(0.921)
TCGA-KL-8339-01	8	101534683	101534683	G	T	ANKRD46	Intron		0.18		
TCGA-KL-8339-01	8	133141626	133141626	G	A	KCNQ3	Silent	p.A834A	0.40		
TCGA-KL-8339-01	8	139674282	139674282	G	A	COL22A1	Silent	p.A1077A	0.35		
TCGA-KL-8339-01	9	133507382	133507382	A	G	FUBP3	Missense_Mutation	p.N469S	0.41	tolerated(0.75)	benign(0.006)
TCGA-KL-8339-01	9	140409846	140409846	G	C	PNPLA7	Missense_Mutation	p.P404A	0.61	tolerated(0.75)	benign(0.001)
TCGA-KL-8339-01	9	80049325	80049325	G	A	GNA14	Silent	p.Y141Y	0.48		
TCGA-KL-8340-01	10	115348753	115348753	T	C	NRAP	Missense_Mutation	p.K1725R	0.05	tolerated_low_confidence(0.78)	benign(0.001)
TCGA-KL-8340-01	10	27447559	27447559	A	G	MASTL	Missense_Mutation	p.S90G	0.06	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8340-01	12	49087549	49087549	C	T	CCNT1	Missense_Mutation	p.R483H	0.05	deleterious(0)	possibly_damaging(0.77)
TCGA-KL-8340-01	12	97045557	97045557	C	A	C12orf55	Missense_Mutation	p.D1688E	0.05	deleterious(0.01)	probably_damaging(0.972)
TCGA-KL-8340-01	17	2901620	2901620	T	C	RAP1GAP2	Missense_Mutation	p.Y384H	0.06	deleterious(0)	probably_damaging(0.953)
TCGA-KL-8340-01	19	50374973	50374973	T	A	AKT1S1	Missense_Mutation	p.D173V	0.08	deleterious(0)	possibly_damaging(0.779)
TCGA-KL-8340-01	1	50659551	50659551	C	T	ELAVL4	Missense_Mutation	p.R174C	0.08	deleterious(0)	possibly_damaging(0.857)
TCGA-KL-8340-01	22	50278518	50278518	C	T	ZBED4	Missense_Mutation	p.P403L	0.08	tolerated(0.35)	benign(0.002)
TCGA-KL-8340-01	2	74454137	74454137	C	T	SLC4A5	Missense_Mutation	p.A1029T	0.06	deleterious(0.02)	possibly_damaging(0.611)
TCGA-KL-8340-01	2	97032995	97032995	G	C	NCAPH	Missense_Mutation	p.V628L	0.58	deleterious(0.02)	probably_damaging(0.914)
TCGA-KL-8340-01	3	133647421	133647421	G	A	C3orf36	Missense_Mutation	p.A76V	0.19	tolerated_low_confidence(0.46)	possibly_damaging(0.695)
TCGA-KL-8340-01	3	8579024	8579024	G	A	LMCD1	Silent	p.K95K	0.33		
TCGA-KL-8340-01	5	115628154	115628154	A	G	COMMD10	Missense_Mutation	p.T193A	0.10	tolerated(0.07)	benign(0.032)
TCGA-KL-8340-01	5	140720557	140720557	C	T	PCDHGA2	Silent	p.A673A	0.08		
TCGA-KL-8340-01	5	140731460	140731460	C	T	PCDHGB1	Missense_Mutation	p.R545C	0.07	deleterious(0.01)	benign(0.052)
TCGA-KL-8340-01	5	5464930	5464930	A	G	KIAA0947	Missense_Mutation	p.Q1828R	0.14	tolerated(0.23)	benign(0.003)
TCGA-KL-8340-01	6	12719071	12719071	G	A	PHACTR1	Missense_Mutation	p.G32E	0.09	deleterious_low_confidence(0)	probably_damaging(0.969)
TCGA-KL-8340-01	6	160200278	160200278	C	T	TCP1	Silent	p.L490L	0.35		
TCGA-KL-8340-01	8	120754823	120754823	T	C	TAF2	Silent	p.T1096T	0.06		
TCGA-KL-8340-01	9	136231848	136231848	T	C	SURF4	Silent	p.E137E	0.08		
TCGA-KL-8340-01	X	48213477	48213477	G	T	SSX3	Missense_Mutation	p.F79L	0.03	tolerated(0.37)	benign(0.003)
TCGA-KL-8341-01	10	78649263	78649263	C	A	KCNMA1	Missense_Mutation	p.G1119V	0.76	deleterious(0)	probably_damaging(1)
TCGA-KL-8341-01	11	116707862	116707862	G	A	APOA1	Missense_Mutation	p.R19W	0.50	deleterious(0.05)	benign(0.032)
TCGA-KL-8341-01	11	12399324	12399324	A	G	PARVA	Missense_Mutation	p.K84E	0.07	tolerated(0.15)	benign(0.373)
TCGA-KL-8341-01	11	56756940	56756940	T	A	OR5AK2	Silent	p.I184I	0.45		
TCGA-KL-8341-01	11	56756941	56756941	C	T	OR5AK2	Missense_Mutation	p.L185F	0.46	deleterious(0.04)	probably_damaging(0.978)
TCGA-KL-8341-01	11	73686146	73686146	C	T	UCP2	Missense_Mutation	p.R279H	0.53	deleterious(0)	probably_damaging(0.966)
TCGA-KL-8341-01	12	129180458	129180458	G	A	TMEM132C	Missense_Mutation	p.R580Q	0.52	deleterious(0)	possibly_damaging(0.778)
TCGA-KL-8341-01	12	416696	416696	T	C	KDM5A	Missense_Mutation	p.E1285G	0.05	tolerated(0.06)	benign(0.04)
TCGA-KL-8341-01	12	64436722	64436722	T	A	SRGAP1	Silent	p.S214S	0.33		
TCGA-KL-8341-01	12	69140526	69140526	G	A	SLC35E3	Silent	p.Q123Q	0.05		
TCGA-KL-8341-01	12	88444148	88444148	C	T	CEP290	Missense_Mutation	p.E2398K	0.49		possibly_damaging(0.542)
TCGA-KL-8341-01	13	25255781	25255781	T	C	ATP12A	Missense_Mutation	p.Y31H	0.85	tolerated_low_confidence(0.43)	benign(0.005)
TCGA-KL-8341-01	13	49771038	49771038	A	T	FNDC3A	Missense_Mutation	p.D751V	0.88	deleterious(0)	benign(0)
TCGA-KL-8341-01	14	20586424	20586424	T	-	OR4K17	Frame_Shift_Del	p.F287Lfs*12	0.08		
TCGA-KL-8341-01	14	44973579	44973579	A	C	FSCB	3'UTR		0.56		
TCGA-KL-8341-01	14	65569194	65569194	C	T	MAX	5'Flank		0.39		
TCGA-KL-8341-01	15	38228518	38228518	G	A	TMCO5A	5'UTR		0.04		
TCGA-KL-8341-01	15	42684852	42684852	C	A	CAPN3	Missense_Mutation	p.Q321K	0.37	tolerated(0.08)	benign(0.232)
TCGA-KL-8341-01	15	42742931	42742931	C	T	ZNF106	Silent	p.S490S	0.41		
TCGA-KL-8341-01	15	90784689	90784689	G	A	GDPGP1	Silent	p.P183P	0.30		
TCGA-KL-8341-01	16	1493884	1493884	G	A	CCDC154	Missense_Mutation	p.S46L	0.47	tolerated(0.1)	possibly_damaging(0.776)
TCGA-KL-8341-01	16	2113034	2113034	A	T	TSC2	Missense_Mutation	p.I475F	0.44	deleterious(0.01)	benign(0.03)
TCGA-KL-8341-01	16	24950855	24950855	G	T	ARHGAP17	Missense_Mutation	p.H518Q	0.39	tolerated(0.18)	benign(0.014)
TCGA-KL-8341-01	16	81242140	81242140	G	A	PKD1L2	Missense_Mutation	p.P239L	0.43	deleterious(0)	probably_damaging(1)
TCGA-KL-8341-01	17	21320151	21320151	G	A	KCNJ12	3'UTR		0.22		
TCGA-KL-8341-01	17	40321548	40321548	G	A	KCNH4	Missense_Mutation	p.L513F	0.24	deleterious(0.02)	possibly_damaging(0.47)
TCGA-KL-8341-01	17	48184157	48184157	G	C	PDK2	Splice_Site	p.X173_splice	0.92		
TCGA-KL-8341-01	17	7577064	7577064	T	A	TP53	Nonsense_Mutation	p.K292*	0.95		
TCGA-KL-8341-01	19	14164838	14164838	G	A	PALM3	Missense_Mutation	p.T534M	0.48	tolerated(0.05)	benign(0.216)
TCGA-KL-8341-01	1	1235261	1235261	C	G	ACAP3	Missense_Mutation	p.A230P	0.90	deleterious(0)	probably_damaging(0.961)
TCGA-KL-8341-01	1	230372423	230372423	T	C	GALNT2	Silent	p.L187L	0.07		
TCGA-KL-8341-01	1	6634949	6634949	G	A	TAS1R1	Missense_Mutation	p.D253N	0.80	tolerated(0.58)	benign(0.036)
TCGA-KL-8341-01	20	48467342	48467342	T	C	SLC9A8	Missense_Mutation	p.L193S	0.48	deleterious_low_confidence(0.02)	benign(0.018)
TCGA-KL-8341-01	22	24472140	24472140	C	T	CABIN1	Silent	p.L885L	0.51		
TCGA-KL-8341-01	22	33327400	33327400	C	T	SYN3	Missense_Mutation	p.V146M	0.50	tolerated(0.41)	unknown(0)
TCGA-KL-8341-01	2	207171302	207171302	G	A	ZDBF2	Missense_Mutation	p.E684K	0.88	tolerated(0.13)	possibly_damaging(0.692)
TCGA-KL-8341-01	3	124692706	124692706	C	G	HEG1	Missense_Mutation	p.D1289H	0.27	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8341-01	3	28533617	28533617	G	A	ZCWPW2	Splice_Site	p.X204_splice	0.03		
TCGA-KL-8341-01	3	28533652	28533652	G	A	ZCWPW2	Silent	p.L215L	0.03		
TCGA-KL-8341-01	3	38022537	38022537	G	T	CTDSPL	3'UTR		0.25		
TCGA-KL-8341-01	4	115998171	115998171	G	A	NDST4	Missense_Mutation	p.R8W	0.05	tolerated_low_confidence(0.05)	possibly_damaging(0.556)
TCGA-KL-8341-01	4	843563	843563	C	T	GAK	Splice_Site	p.X1279_splice	0.50		
TCGA-KL-8341-01	5	141236865	141236865	G	A	PCDH1	Missense_Mutation	p.R1091C	0.57	deleterious(0)	probably_damaging(0.997)
TCGA-KL-8341-01	5	180276712	180276712	C	A	ZFP62	Nonsense_Mutation	p.E595*	0.26		
TCGA-KL-8341-01	5	92923831	92923831	G	A	NR2F1	Silent	p.A224A	0.09		
TCGA-KL-8341-01	6	29323612	29323612	C	A	OR5V1	Missense_Mutation	p.D121Y	0.23	deleterious(0)	probably_damaging(1)
TCGA-KL-8341-01	6	31734079	31734079	T	A	VWA7	Missense_Mutation	p.D756V	0.35	tolerated(0.07)	possibly_damaging(0.782)
TCGA-KL-8341-01	7	141672852	141672852	G	A	TAS2R38	Missense_Mutation	p.S213F	0.50	deleterious(0)	probably_damaging(0.993)
TCGA-KL-8341-01	7	5334542	5334542	C	T	SLC29A4	Missense_Mutation	p.T199M	0.43	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8341-01	8	103277497	103277497	G	A	UBR5	Nonsense_Mutation	p.R2478*	0.04		
TCGA-KL-8341-01	8	105510296	105510296	C	T	LRP12	Missense_Mutation	p.E162K	0.74	tolerated(0.32)	benign(0.046)
TCGA-KL-8341-01	8	144550602	144550602	G	A	ZC3H3	Silent	p.G685G	0.32		
TCGA-KL-8341-01	8	24170913	24170913	T	C	ADAM28	Silent	p.S132S	0.63		
TCGA-KL-8341-01	9	107367738	107367738	G	C	OR13C2	Silent	p.T57T	0.06		
TCGA-KL-8341-01	X	119390759	119390759	C	T	ZBTB33	3'UTR		0.98		
TCGA-KL-8341-01	X	77395087	77395087	G	A	TAF9B	Missense_Mutation	p.P8S	0.41	tolerated(1)	benign(0.004)
TCGA-KL-8341-01	Y	2829115	2829115	G	A	ZFY	Missense_Mutation	p.G21E	0.52	tolerated(0.05)	benign(0.033)
TCGA-KL-8342-01	10	81205166	81205166	C	T	ZCCHC24	Missense_Mutation	p.A11T	0.13	tolerated_low_confidence(0.41)	possibly_damaging(0.499)
TCGA-KL-8342-01	12	51072520	51072520	A	G	DIP2B	Silent	p.K325K	0.04		
TCGA-KL-8342-01	12	56491706	56491706	G	A	ERBB3	Silent	p.L866L	0.10		
TCGA-KL-8342-01	15	100672306	100672306	C	T	ADAMTS17	Missense_Mutation	p.D543N	0.05	tolerated(0.05)	benign(0.445)
TCGA-KL-8342-01	15	33359287	33359287	C	T	FMN1	Missense_Mutation	p.G267R	0.33	deleterious_low_confidence(0.02)	unknown(0)
TCGA-KL-8342-01	15	53997272	53997272	A	G	WDR72	Missense_Mutation	p.C421R	0.10	deleterious(0)	probably_damaging(0.993)
TCGA-KL-8342-01	15	75503149	75503149	G	A	C15orf39	Missense_Mutation	p.E946K	0.05	deleterious_low_confidence(0.04)	benign(0.259)
TCGA-KL-8342-01	16	12875238	12875238	G	A	CPPED1	Silent	p.G31G	0.05		
TCGA-KL-8342-01	16	14041897	14041897	A	T	ERCC4	Missense_Mutation	p.E815V	0.05	deleterious(0)	possibly_damaging(0.635)
TCGA-KL-8342-01	16	2129290	2129290	G	A	TSC2	Missense_Mutation	p.E1049K	0.43	deleterious(0.02)	probably_damaging(0.93)
TCGA-KL-8342-01	16	67293560	67293560	C	A	SLC9A5	Missense_Mutation	p.L571M	0.09	tolerated(0.08)	possibly_damaging(0.73)
TCGA-KL-8342-01	17	43531447	43531447	C	G	PLEKHM1	Missense_Mutation	p.D591H	0.23	deleterious(0)	probably_damaging(1)
TCGA-KL-8342-01	17	6978366	6978366	A	G	CLEC10A	3'UTR		0.08		
TCGA-KL-8342-01	19	9801747	9801747	T	G	ZNF812	Missense_Mutation	p.K144N	0.10	tolerated(0.07)	benign(0.012)
TCGA-KL-8342-01	1	1254710	1254710	T	C	CPSF3L	Missense_Mutation	p.K138R	0.07	deleterious(0.03)	probably_damaging(0.997)
TCGA-KL-8342-01	1	145687066	145687066	G	A	RNF115	Missense_Mutation	p.S253N	0.63	tolerated(0.34)	benign(0.01)
TCGA-KL-8342-01	1	24122442	24122442	G	A	GALE	Silent	p.A348A	0.20		
TCGA-KL-8342-01	22	43231465	43231465	T	A	ARFGAP3	Missense_Mutation	p.N99I	0.44	deleterious(0.01)	possibly_damaging(0.747)
TCGA-KL-8342-01	2	100167950	100167950	C	T	AFF3	Missense_Mutation	p.A1248T	0.60	tolerated(0.27)	benign(0.03)
TCGA-KL-8342-01	3	49153200	49153200	G	T	USP19	Missense_Mutation	p.P548H	0.04	deleterious(0.03)	possibly_damaging(0.722)
TCGA-KL-8342-01	4	155506781	155506781	G	C	FGA	Missense_Mutation	p.S600R	0.04	deleterious(0)	possibly_damaging(0.798)
TCGA-KL-8342-01	4	156643251	156643251	G	A	GUCY1A3	Missense_Mutation	p.R593H	0.03	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8342-01	5	140720439	140720439	A	G	PCDHGA2	Missense_Mutation	p.D634G	0.04	deleterious_low_confidence(0)	probably_damaging(0.955)
TCGA-KL-8342-01	7	99956366	99956366	C	T	PILRB	Missense_Mutation	p.H40Y	0.40	tolerated(0.35)	benign(0.002)
TCGA-KL-8342-01	X	129281737	129281737	G	A	AIFM1	Missense_Mutation	p.P155L	0.09	deleterious(0)	probably_damaging(0.967)
TCGA-KL-8342-01	X	149638778	149638778	A	T	MAMLD1	Silent	p.A286A	0.75		
TCGA-KL-8343-01	10	73767938	73767938	C	T	CHST3	Silent	p.R383R	0.55		
TCGA-KL-8343-01	11	1774767	1774767	T	C	CTSD	Missense_Mutation	p.N402S	0.12	tolerated(0.08)	possibly_damaging(0.631)
TCGA-KL-8343-01	11	281811	281811	C	T	NLRP6	Missense_Mutation	p.R693W	0.37	tolerated(0.07)	benign(0.039)
TCGA-KL-8343-01	11	32118784	32118784	T	-	RCN1	Frame_Shift_Del	p.F117Lfs*33	0.32		
TCGA-KL-8343-01	11	74408313	74408316	CTTT	-	CHRDL2	Frame_Shift_Del	p.E401Vfs*47	0.35		
TCGA-KL-8343-01	12	122672370	122672370	C	T	LRRC43	Silent	p.Y215Y	0.43		
TCGA-KL-8343-01	12	22824236	22824236	C	T	ETNK1	Missense_Mutation	p.S333F	0.06	deleterious(0)	possibly_damaging(0.682)
TCGA-KL-8343-01	12	53084953	53084953	T	C	KRT77	Missense_Mutation	p.E578G	0.06	deleterious_low_confidence(0)	unknown(0)
TCGA-KL-8343-01	13	77799637	77799637	A	G	MYCBP2	Silent	p.P892P	0.27		
TCGA-KL-8343-01	14	24793320	24793320	G	C	ADCY4	Missense_Mutation	p.A665G	0.34	tolerated(0.34)	benign(0.113)
TCGA-KL-8343-01	15	41313154	41313154	G	C	INO80	Missense_Mutation	p.A1073G	0.29	tolerated(0.33)	benign(0.01)
TCGA-KL-8343-01	15	59368246	59368246	G	T	RNF111	Missense_Mutation	p.V594F	0.31	deleterious_low_confidence(0.03)	benign(0.405)
TCGA-KL-8343-01	16	67679167	67679167	C	G	RLTPR	Missense_Mutation	p.D6E	0.11	tolerated(0.31)	possibly_damaging(0.677)
TCGA-KL-8343-01	16	85741549	85741549	G	A	C16orf74	3'UTR		0.24		
TCGA-KL-8343-01	16	9857467	9857467	T	C	GRIN2A	Missense_Mutation	p.S1312G	0.07	deleterious(0)	probably_damaging(0.998)
TCGA-KL-8343-01	17	42225428	42225428	C	A	C17orf53	Missense_Mutation	p.T86K	0.40	tolerated(0.16)	benign(0.007)
TCGA-KL-8343-01	18	6978199	6978199	C	A	LAMA1	Missense_Mutation	p.M2062I	0.34	tolerated(0.1)	benign(0.012)
TCGA-KL-8343-01	19	53885143	53885143	A	G	ZNF525	Silent	p.K437K	0.10		
TCGA-KL-8343-01	1	110168780	110168780	A	T	AMPD2	Splice_Site	p.X172_splice	0.49		
TCGA-KL-8343-01	1	203188924	203188924	G	T	CHIT1	Silent	p.I261I	0.68		
TCGA-KL-8343-01	1	211654675	211654675	G	A	RD3	Missense_Mutation	p.T28M	0.13	deleterious(0.03)	probably_damaging(0.969)
TCGA-KL-8343-01	22	26736527	26736527	C	A	SEZ6L	Missense_Mutation	p.T714N	0.32	deleterious(0.01)	benign(0.232)
TCGA-KL-8343-01	2	103068475	103068475	T	A	IL18RAP	Missense_Mutation	p.V545D	0.10	deleterious(0.03)	possibly_damaging(0.574)
TCGA-KL-8343-01	2	128747329	128747329	C	A	SAP130	Missense_Mutation	p.R556L	0.38	deleterious_low_confidence(0)	probably_damaging(0.997)
TCGA-KL-8343-01	2	198358117	198358117	T	A	HSPD1	Missense_Mutation	p.H267L	0.41	tolerated(0.33)	benign(0.309)
TCGA-KL-8343-01	2	226273811	226273811	T	A	NYAP2	Missense_Mutation	p.I72K	0.36	deleterious(0.03)	benign(0.352)
TCGA-KL-8343-01	2	27527838	27527838	C	A	TRIM54	Missense_Mutation	p.S217R	0.38	deleterious(0.02)	benign(0.276)
TCGA-KL-8343-01	3	447458	447458	A	G	CHL1	3'UTR		0.07		
TCGA-KL-8343-01	3	77645803	77645803	C	T	ROBO2	Missense_Mutation	p.P935L	0.39	deleterious(0.01)	possibly_damaging(0.713)
TCGA-KL-8343-01	4	115544546	115544546	T	G	UGT8	Silent	p.A170A	0.42		
TCGA-KL-8343-01	4	13571477	13571477	T	C	BOD1L1	3'UTR		0.29		
TCGA-KL-8343-01	4	164394497	164394497	T	A	TKTL2	Missense_Mutation	p.L130F	0.06	deleterious(0)	probably_damaging(0.951)
TCGA-KL-8343-01	4	7738931	7738931	G	A	SORCS2	Intron		0.17		
TCGA-KL-8343-01	5	31521319	31521319	C	A	DROSHA	Missense_Mutation	p.E286D	0.33	tolerated_low_confidence(0.47)	benign(0.064)
TCGA-KL-8343-01	5	79968625	79968625	C	G	MSH3	Silent	p.L325L	0.03		
TCGA-KL-8343-01	6	137147498	137147498	A	G	PEX7	Missense_Mutation	p.E77G	0.05	deleterious(0)	probably_damaging(1)
TCGA-KL-8343-01	6	41470555	41470555	G	A	RP11-328M4.3	RNA		0.03		
TCGA-KL-8343-01	6	43020113	43020113	A	G	CUL7	Silent	p.L190L	0.14		
TCGA-KL-8343-01	7	127255519	127255519	C	T	PAX4	Missense_Mutation	p.R19Q	0.25	deleterious(0)	probably_damaging(1)
TCGA-KL-8343-01	7	149486388	149486388	G	T	SSPO	RNA		0.29		
TCGA-KL-8343-01	8	144680424	144680424	G	T	TIGD5	Silent	p.R117R	0.40		
TCGA-KL-8343-01	8	77763346	77763346	T	C	ZFHX4	Missense_Mutation	p.Y1397H	0.04		possibly_damaging(0.607)
TCGA-KL-8343-01	X	129506930	129506930	G	T	SLC25A14	3'UTR		0.09		
TCGA-KL-8343-01	X	30237265	30237265	G	A	MAGEB2	Missense_Mutation	p.E190K	0.82	tolerated(0.09)	benign(0.038)
TCGA-KL-8343-01	X	31198540	31198550	GACCAGAAAAA	-	DMD	Frame_Shift_Del	p.F3341Lfs*7	0.59		
TCGA-KL-8343-01	X	48549625	48549625	A	C	WAS	3'UTR		0.14		
TCGA-KL-8344-01	10	63851395	63851395	A	G	ARID5B	Missense_Mutation	p.R725G	0.06	tolerated(0.33)	probably_damaging(0.942)
TCGA-KL-8344-01	11	30942461	30942461	C	T	DCDC1	Missense_Mutation	p.S1052N	0.37	tolerated(0.61)	benign(0.383)
TCGA-KL-8344-01	11	3114269	3114269	C	T	OSBPL5	Missense_Mutation	p.V654I	0.08	deleterious(0)	probably_damaging(0.954)
TCGA-KL-8344-01	12	111744838	111744838	G	T	CUX2	Silent	p.L324L	0.07		
TCGA-KL-8344-01	12	122406016	122406016	C	T	WDR66	Silent	p.C904C	0.37		
TCGA-KL-8344-01	12	40728900	40728900	A	G	LRRK2	Silent	p.K1963K	0.04		
TCGA-KL-8344-01	14	19377804	19377804	C	A	OR11H12	Missense_Mutation	p.H71N	0.38	deleterious(0)	possibly_damaging(0.756)
TCGA-KL-8344-01	14	95579561	95579561	T	C	DICER1	Silent	p.R636R	0.55		
TCGA-KL-8344-01	15	42034895	42034895	A	G	MGA	Silent	p.T1579T	0.38		
TCGA-KL-8344-01	16	31500789	31500789	G	C	SLC5A2	Intron		0.27		
TCGA-KL-8344-01	16	70161181	70161181	C	T	PDPR	Silent	p.T82T	0.14		
TCGA-KL-8344-01	17	15930770	15930770	C	T	TTC19	Silent	p.H359H	0.32		
TCGA-KL-8344-01	18	40850387	40850387	T	C	SYT4	Silent	p.G399G	0.11		
TCGA-KL-8344-01	18	73001037	73001039	AAG	-	TSHZ1	3'UTR		0.09		
TCGA-KL-8344-01	18	9102740	9102740	C	T	NDUFV2	5'UTR		0.43		
TCGA-KL-8344-01	19	15740200	15740200	A	G	CYP4F8	RNA		0.42		
TCGA-KL-8344-01	19	50059875	50059875	T	C	NOSIP	Missense_Mutation	p.E219G	0.39	tolerated(0.42)	benign(0.012)
TCGA-KL-8344-01	1	29189494	29189494	G	A	OPRD1	Missense_Mutation	p.C273Y	0.41	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8344-01	1	89585913	89585913	A	C	GBP2	Missense_Mutation	p.F126C	0.05	deleterious(0)	probably_damaging(0.964)
TCGA-KL-8344-01	20	55208518	55208518	G	A	TFAP2C	Silent	p.S232S	0.05		
TCGA-KL-8344-01	2	28817076	28817076	A	T	PLB1	Intron		0.16		
TCGA-KL-8344-01	3	101540561	101540561	C	G	NXPE3	Missense_Mutation	p.I481M	0.46	deleterious(0.02)	possibly_damaging(0.456)
TCGA-KL-8344-01	3	53914090	53914090	G	T	ACTR8	Missense_Mutation	p.T57N	0.43	tolerated(0.39)	benign(0.008)
TCGA-KL-8344-01	4	123160846	123160846	G	A	KIAA1109	Missense_Mutation	p.V1337I	0.31		benign(0.05)
TCGA-KL-8344-01	6	109315685	109315685	C	A	SESN1	Missense_Mutation	p.S367I	0.39	deleterious(0)	possibly_damaging(0.756)
TCGA-KL-8344-01	8	110587964	110587964	A	T	SYBU	Missense_Mutation	p.L388Q	0.04	tolerated(0.59)	benign(0.071)
TCGA-KL-8344-01	9	125616244	125616244	A	G	RC3H2	Missense_Mutation	p.L1035P	0.34	deleterious_low_confidence(0.04)	probably_damaging(0.991)
TCGA-KL-8344-01	9	134504010	134504010	T	C	RAPGEF1	Missense_Mutation	p.T316A	0.04	tolerated(0.14)	possibly_damaging(0.878)
TCGA-KL-8344-01	9	84607861	84607861	C	T	SPATA31D1	Missense_Mutation	p.L826F	0.36	tolerated(0.13)	possibly_damaging(0.799)
TCGA-KL-8344-01	X	16142443	16142443	T	C	GRPR	Missense_Mutation	p.S123P	0.06	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8345-01	10	105793026	105793026	C	T	COL17A1	Missense_Mutation	p.V1422M	0.07		unknown(0)
TCGA-KL-8345-01	10	114136102	114136102	A	G	ACSL5	Missense_Mutation	p.N12S	0.08	tolerated_low_confidence(0.62)	possibly_damaging(0.486)
TCGA-KL-8345-01	10	89711920	89711926	TACCTGT	-	PTEN	Frame_Shift_Del	p.Y180*	0.57		
TCGA-KL-8345-01	11	47653265	47653265	T	C	MTCH2	Splice_Site	p.X124_splice	0.05		
TCGA-KL-8345-01	13	76111919	76111919	G	A	COMMD6	Missense_Mutation	p.P8L	0.45	tolerated_low_confidence(1)	possibly_damaging(0.859)
TCGA-KL-8345-01	14	24773484	24773484	G	A	NOP9	Splice_Site	p.X549_splice	0.52		
TCGA-KL-8345-01	16	1260601	1260601	G	A	CACNA1H	Missense_Mutation	p.V1330I	0.08	tolerated(0.13)	benign(0.021)
TCGA-KL-8345-01	16	4445319	4445319	C	T	CORO7	Missense_Mutation	p.D196N	0.07	deleterious(0)	probably_damaging(1)
TCGA-KL-8345-01	17	39963092	39963092	C	G	LEPREL4	Missense_Mutation	p.E368Q	0.69	tolerated(0.41)	benign(0.046)
TCGA-KL-8345-01	18	47812501	47812501	T	G	CXXC1	Missense_Mutation	p.D117A	0.42	tolerated(0.62)	benign(0.001)
TCGA-KL-8345-01	19	35800935	35800935	G	T	MAG	Nonsense_Mutation	p.E464*	0.43		
TCGA-KL-8345-01	1	118596629	118596629	A	T	SPAG17	Missense_Mutation	p.L937H	0.11	deleterious(0)	probably_damaging(1)
TCGA-KL-8345-01	1	159832363	159832363	T	C	VSIG8	5'UTR		0.34		
TCGA-KL-8345-01	1	196744041	196744041	C	T	CFHR3	Silent	p.L9L	0.24		
TCGA-KL-8345-01	1	28600021	28600021	T	C	SESN2	Splice_Site	p.X301_splice	0.06		
TCGA-KL-8345-01	1	49100247	49100247	C	T	AGBL4	Missense_Mutation	p.R290H	0.79	deleterious(0)	probably_damaging(0.999)
TCGA-KL-8345-01	21	41514495	41514495	G	A	DSCAM	Silent	p.L1132L	0.43		
TCGA-KL-8345-01	22	17443634	17443634	C	T	GAB4	Missense_Mutation	p.A572T	0.47	tolerated(0.43)	benign(0.001)
TCGA-KL-8345-01	22	37333576	37333576	G	A	CSF2RB	Missense_Mutation	p.A576T	0.15	tolerated(0.21)	benign(0.001)
TCGA-KL-8345-01	22	46763729	46763729	A	G	CELSR1	Missense_Mutation	p.L2659P	0.04	deleterious(0)	probably_damaging(0.987)
TCGA-KL-8345-01	2	171871451	171871451	G	T	TLK1	Missense_Mutation	p.A415E	0.78	tolerated(0.37)	benign(0.42)
TCGA-KL-8345-01	2	217559222	217559222	G	T	IGFBP5	Missense_Mutation	p.L93M	0.79	deleterious(0.03)	possibly_damaging(0.476)
TCGA-KL-8345-01	2	219610500	219610500	C	T	TTLL4	Missense_Mutation	p.R625W	0.72	deleterious(0.01)	possibly_damaging(0.525)
TCGA-KL-8345-01	2	8871660	8871660	G	A	KIDINS220	Silent	p.L1502L	0.75		
TCGA-KL-8345-01	3	113623086	113623086	A	G	GRAMD1C	Silent	p.E252E	0.05		
TCGA-KL-8345-01	4	114276401	114276401	G	A	ANK2	Silent	p.G2209G	0.42		
TCGA-KL-8345-01	4	126389910	126389910	T	C	FAT4	Missense_Mutation	p.L4048P	0.39		benign(0.027)
TCGA-KL-8345-01	4	3417849	3417849	G	A	RGS12	Splice_Site	p.X809_splice	0.40		
TCGA-KL-8345-01	4	56737009	56737009	C	T	EXOC1	Missense_Mutation	p.H257Y	0.37	tolerated(0.39)	benign(0.003)
TCGA-KL-8345-01	4	88535754	88535754	G	T	DSPP	Missense_Mutation	p.S647I	0.43		unknown(0)
TCGA-KL-8345-01	6	116784510	116784510	G	A	FAM26F	Missense_Mutation	p.R197Q	0.71	tolerated(0.09)	benign(0.211)
TCGA-KL-8345-01	7	131189141	131189141	C	A	PODXL	Missense_Mutation	p.D536Y	0.38	deleterious(0)	probably_damaging(1)
TCGA-KL-8345-01	7	158823446	158823446	C	A	VIPR2	Missense_Mutation	p.R393L	0.40	tolerated(0.63)	benign(0)
TCGA-KL-8345-01	9	71845079	71845079	T	G	TJP2	Missense_Mutation	p.F565L	0.42	deleterious(0.01)	possibly_damaging(0.686)
TCGA-KL-8345-01	X	19854348	19854348	C	T	SH3KBP1	Silent	p.T19T	0.93		
TCGA-KL-8345-01	X	53239928	53239928	C	T	KDM5C	Missense_Mutation	p.G505S	0.03	deleterious(0)	probably_damaging(1)
TCGA-KL-8345-01	X	70627428	70627428	C	T	TAF1	Missense_Mutation	p.P1391L	0.33	deleterious(0.01)	benign(0.013)
TCGA-KL-8346-01	11	61183901	61183901	C	T	CPSF7	Missense_Mutation	p.R257H	0.40	tolerated(0.14)	probably_damaging(0.989)
TCGA-KL-8346-01	11	67209179	67209179	G	A	CORO1B	Intron		0.54		
TCGA-KL-8346-01	11	72379445	72379445	A	T	PDE2A	Intron		0.06		
TCGA-KL-8346-01	11	75152734	75152734	G	A	GDPD5	Missense_Mutation	p.R428W	0.45	tolerated(0.17)	benign(0)
TCGA-KL-8346-01	11	96117896	96117896	T	C	CCDC82	Missense_Mutation	p.R6G	0.05	deleterious(0)	probably_damaging(0.977)
TCGA-KL-8346-01	12	7045495	7045495	A	C	ATN1	Silent	p.S355S	0.43		
TCGA-KL-8346-01	14	20898390	20898390	C	T	KLHL33	Missense_Mutation	p.E149K	0.52	tolerated(0.2)	benign(0.021)
TCGA-KL-8346-01	15	42113229	42113229	A	C	MAPKBP1	Missense_Mutation	p.H900P	0.38	tolerated(0.27)	benign(0.001)
TCGA-KL-8346-01	17	18042900	18042900	A	G	MYO15A	Missense_Mutation	p.D1729G	0.10		unknown(0)
TCGA-KL-8346-01	17	18148349	18148349	G	C	FLII	3'UTR		1.00		
TCGA-KL-8346-01	17	73727413	73727413	G	T	ITGB4	Silent	p.T393T	0.94		
TCGA-KL-8346-01	18	9954094	9954094	T	A	VAPA	Silent	p.P257P	0.41		
TCGA-KL-8346-01	1	158436256	158436256	G	A	OR10K1	Missense_Mutation	p.R302Q	0.75	tolerated(0.16)	benign(0.004)
TCGA-KL-8346-01	1	32148832	32148832	C	T	COL16A1	Missense_Mutation	p.R811Q	0.94		unknown(0)
TCGA-KL-8346-01	1	47685621	47685621	G	T	TAL1	Missense_Mutation	p.T256N	0.91	tolerated(0.13)	benign(0.001)
TCGA-KL-8346-01	22	38328810	38328810	C	T	MICALL1	Missense_Mutation	p.R717C	0.06	tolerated(0.08)	benign(0.022)
TCGA-KL-8346-01	3	184100469	184100469	G	A	CHRD	Missense_Mutation	p.V297I	0.45	tolerated(0.73)	benign(0.01)
TCGA-KL-8346-01	3	25647566	25647570	GAGAA	-	TOP2B	Frame_Shift_Del	p.F1443Ifs*11	0.47		
TCGA-KL-8346-01	3	56766201	56766201	C	T	ARHGEF3	Intron		0.08		
TCGA-KL-8346-01	4	114290874	114290874	G	A	ANK2	Silent	p.P3841P	0.07		
TCGA-KL-8346-01	4	39839775	39839775	C	G	PDS5A	Missense_Mutation	p.K1237N	0.08	deleterious_low_confidence(0.03)	benign(0.438)
TCGA-KL-8346-01	4	48343812	48343812	A	G	SLAIN2	Missense_Mutation	p.E19G	0.19	deleterious(0)	possibly_damaging(0.859)
TCGA-KL-8346-01	4	89199470	89199470	T	C	PPM1K	Missense_Mutation	p.K89R	0.48	tolerated(0.22)	benign(0.003)
TCGA-KL-8346-01	5	160044894	160044894	G	A	ATP10B	Missense_Mutation	p.R835C	0.74	deleterious(0)	probably_damaging(1)
TCGA-KL-8346-01	X	49645527	49645527	G	C	USP27X	Missense_Mutation	p.G206A	0.07	tolerated(0.07)	benign(0.063)
TCGA-KM-8438-01	11	67176906	67176906	A	G	TBC1D10C	Missense_Mutation	p.D341G	0.08	deleterious(0.02)	benign(0.146)
TCGA-KM-8438-01	11	7324616	7324616	G	A	SYT9	Silent	p.S164S	0.42		
TCGA-KM-8438-01	12	121431369	121431370	-	G	HNF1A	Frame_Shift_Ins	p.D192Gfs*2	0.27		
TCGA-KM-8438-01	15	45951304	45951305	-	A	SQRDL	Frame_Shift_Ins	p.M62Nfs*14	0.19		
TCGA-KM-8438-01	15	51768854	51768854	C	A	DMXL2	Missense_Mutation	p.R2299L	0.33	deleterious(0.01)	probably_damaging(0.999)
TCGA-KM-8438-01	15	78921471	78921471	G	A	CHRNB4	Silent	p.P392P	0.05		
TCGA-KM-8438-01	17	11833188	11833188	T	C	DNAH9	Silent	p.I3961I	0.66		
TCGA-KM-8438-01	17	57895131	57895131	T	-	VMP1	Frame_Shift_Del	p.I324Mfs*7	0.09		
TCGA-KM-8438-01	18	77208855	77208855	G	A	NFATC1	Missense_Mutation	p.R474H	0.43	deleterious(0)	probably_damaging(0.988)
TCGA-KM-8438-01	19	52133150	52133150	G	A	SIGLEC5	Silent	p.R119R	0.43		
TCGA-KM-8438-01	19	54756385	54756385	G	A	LILRB5	Missense_Mutation	p.A501V	0.13	tolerated(0.34)	benign(0.009)
TCGA-KM-8438-01	19	58879856	58879856	G	A	ZNF837	Missense_Mutation	p.R282C	0.62	tolerated(0.08)	possibly_damaging(0.78)
TCGA-KM-8438-01	20	30584474	30584474	G	A	XKR7	Silent	p.A318A	0.43		
TCGA-KM-8438-01	22	41973907	41973907	C	T	PMM1	Missense_Mutation	p.V191I	0.72	tolerated(0.13)	benign(0.139)
TCGA-KM-8438-01	2	179641009	179641009	C	T	TTN	Missense_Mutation	p.R1861H	0.75		
TCGA-KM-8438-01	2	233244614	233244614	G	A	ALPP	Missense_Mutation	p.A209T	0.04	deleterious(0.01)	probably_damaging(0.978)
TCGA-KM-8438-01	3	182631695	182631695	G	T	ATP11B	Missense_Mutation	p.C1122F	0.28	deleterious_low_confidence(0.05)	benign(0.282)
TCGA-KM-8438-01	3	37785427	37785427	C	A	ITGA9	Missense_Mutation	p.P779T	0.14	deleterious(0)	probably_damaging(1)
TCGA-KM-8438-01	3	47084094	47084094	G	A	SETD2	Nonsense_Mutation	p.R2399*	0.23		
TCGA-KM-8438-01	4	956357	956357	C	T	DGKQ	Missense_Mutation	p.G694S	0.41	deleterious(0.02)	probably_damaging(0.954)
TCGA-KM-8438-01	5	94936601	94936601	C	-	ARSK	Frame_Shift_Del	p.P383Rfs*22	0.46		
TCGA-KM-8438-01	7	100364780	100364780	A	C	ZAN	Missense_Mutation	p.N1587T	0.44		unknown(0)
TCGA-KM-8438-01	7	123302156	123302156	C	A	LMOD2	Missense_Mutation	p.N172K	0.48	tolerated(0.29)	benign(0.026)
TCGA-KM-8438-01	7	127224826	127224826	C	A	GCC1	Missense_Mutation	p.E137D	0.43	tolerated(0.21)	probably_damaging(0.996)
TCGA-KM-8438-01	7	150772848	150772851	ACTT	-	SLC4A2	Frame_Shift_Del	p.Y1154Sfs*59	0.35		
TCGA-KM-8438-01	7	30739613	30739613	C	T	CRHR2	Missense_Mutation	p.V13I	0.22	tolerated_low_confidence(0.5)	benign(0.002)
TCGA-KM-8438-01	8	16935352	16935352	C	T	MICU3	Nonsense_Mutation	p.R210*	0.38		
TCGA-KM-8438-01	8	87487151	87487154	AAGT	-	RMDN1	Frame_Shift_Del	p.L263Ffs*3	0.41		
TCGA-KM-8438-01	9	84533225	84533225	C	T	SPATA31D5P	RNA		0.44		
TCGA-KM-8438-01	X	54276507	54276507	G	A	WNK3	Missense_Mutation	p.T878M	0.06	deleterious(0)	probably_damaging(0.997)
TCGA-KM-8439-01	10	98715370	98715370	A	G	LCOR	Silent	p.E331E	0.05		
TCGA-KM-8439-01	11	8120345	8120345	G	A	TUB	Missense_Mutation	p.G402R	0.03	deleterious(0)	probably_damaging(1)
TCGA-KM-8439-01	12	133357472	133357472	T	C	GOLGA3	Missense_Mutation	p.E1165G	0.10	deleterious(0)	probably_damaging(0.92)
TCGA-KM-8439-01	16	30794552	30794552	C	T	ZNF629	Missense_Mutation	p.R366Q	0.35	deleterious(0.02)	probably_damaging(0.994)
TCGA-KM-8439-01	16	57684179	57684179	G	A	GPR56	5'UTR		0.40		
TCGA-KM-8439-01	17	44847153	44847153	C	T	WNT3	Missense_Mutation	p.R195H	0.38	deleterious(0)	probably_damaging(0.997)
TCGA-KM-8439-01	18	21404467	21404467	G	T	LAMA3	Missense_Mutation	p.D837Y	0.07		possibly_damaging(0.563)
TCGA-KM-8439-01	19	55549620	55549620	T	C	GP6	5'UTR		0.11		
TCGA-KM-8439-01	1	240371393	240371393	C	T	FMN2	Missense_Mutation	p.A1094V	0.25		unknown(0)
TCGA-KM-8439-01	20	34021967	34021967	C	T	GDF5	Missense_Mutation	p.D416N	0.48	deleterious(0)	possibly_damaging(0.742)
TCGA-KM-8439-01	2	26608003	26608003	G	A	EPT1	Missense_Mutation	p.S303N	0.25	deleterious(0)	benign(0.001)
TCGA-KM-8439-01	2	37076582	37076582	G	A	STRN	3'UTR		0.45		
TCGA-KM-8439-01	2	74007178	74007178	G	A	DUSP11	Missense_Mutation	p.S22F	0.33	deleterious_low_confidence(0.04)	benign(0.227)
TCGA-KM-8439-01	2	85262268	85262268	C	-	KCMF1	Frame_Shift_Del	p.S105*	0.26		
TCGA-KM-8439-01	6	133789819	133789819	C	A	EYA4	Missense_Mutation	p.T307N	0.36	tolerated(0.22)	benign(0.009)
TCGA-KM-8439-01	7	128586594	128586594	A	G	IRF5	Missense_Mutation	p.E142G	0.08	tolerated(0.13)	benign(0.014)
TCGA-KM-8440-01	11	1093064	1093064	C	A	MUC2	Missense_Mutation	p.T1628N	0.09		unknown(0)
TCGA-KM-8440-01	11	61026257	61026257	C	T	VWCE	Missense_Mutation	p.V920M	0.13	tolerated_low_confidence(0.07)	benign(0.005)
TCGA-KM-8440-01	12	114261040	114261040	G	T	RBM19	Missense_Mutation	p.L958I	0.13	deleterious_low_confidence(0.02)	probably_damaging(0.991)
TCGA-KM-8440-01	12	27654933	27654933	G	T	SMCO2	Missense_Mutation	p.G304V	0.37	deleterious(0)	possibly_damaging(0.453)
TCGA-KM-8440-01	12	49436390	49436390	T	C	KMT2D	Missense_Mutation	p.M1941V	0.44		benign(0.018)
TCGA-KM-8440-01	12	68055149	68055153	TTGTC	-	DYRK2	3'UTR		0.27		
TCGA-KM-8440-01	13	41134356	41134356	A	T	FOXO1	Nonsense_Mutation	p.Y424*	0.73		
TCGA-KM-8440-01	14	94524209	94524209	C	A	DDX24	Missense_Mutation	p.G650C	0.41	deleterious(0)	probably_damaging(1)
TCGA-KM-8440-01	16	15695994	15695994	C	A	KIAA0430	Missense_Mutation	p.V1494L	0.42	tolerated(0.25)	probably_damaging(0.997)
TCGA-KM-8440-01	16	19129117	19129119	CTT	-	ITPRIPL2	3'UTR		0.07		
TCGA-KM-8440-01	17	21318693	21318698	GTCATC	CATT	KCNJ12	Frame_Shift_Del	p.S14Ifs*42	0.65		
TCGA-KM-8440-01	1	182573523	182573523	G	A	RGS16	5'UTR		1.00		
TCGA-KM-8440-01	20	57428271	57428271	G	T	GNAS	5'UTR		0.27		
TCGA-KM-8440-01	21	42080523	42080523	C	T	DSCAM	Missense_Mutation	p.R73H	0.31	tolerated(0.07)	probably_damaging(1)
TCGA-KM-8440-01	22	35820356	35820356	G	T	MCM5	3'UTR		0.45		
TCGA-KM-8440-01	2	179702048	179702048	G	A	CCDC141	Silent	p.L1300L	0.05		
TCGA-KM-8440-01	2	32694461	32694461	A	G	BIRC6	Splice_Site	p.X2043_splice	0.04		
TCGA-KM-8440-01	2	80816475	80816475	A	T	CTNNA2	Missense_Mutation	p.E685V	0.04	deleterious(0.04)	possibly_damaging(0.541)
TCGA-KM-8440-01	2	97869939	97869939	T	C	ANKRD36	Silent	p.D1000D	0.52		
TCGA-KM-8440-01	3	51690165	51690165	C	T	RAD54L2	Nonsense_Mutation	p.Q1069*	0.06		
TCGA-KM-8440-01	4	100870503	100870503	G	T	H2AFZ	Missense_Mutation	p.T41K	0.07	deleterious(0.01)	benign(0.213)
TCGA-KM-8440-01	4	88379168	88379168	T	C	NUDT9	Silent	p.L350L	0.19		
TCGA-KM-8440-01	4	961063	961063	G	A	DGKQ	Silent	p.D358D	0.12		
TCGA-KM-8440-01	6	39290273	39290273	A	G	KCNK16	Missense_Mutation	p.L15P	0.22	deleterious(0.01)	probably_damaging(0.983)
TCGA-KM-8440-01	7	55270463	55270463	C	T	EGFR	Intron		0.50		
TCGA-KM-8441-01	10	121431909	121431909	C	T	BAG3	Missense_Mutation	p.T217I	0.07	tolerated(0.41)	benign(0.132)
TCGA-KM-8441-01	11	35492290	35492290	C	T	PAMR1	Missense_Mutation	p.D191N	0.16	tolerated(0.62)	benign(0.049)
TCGA-KM-8441-01	13	30524521	30524521	G	T	LINC00544	RNA		0.23		
TCGA-KM-8441-01	15	49304956	49304956	T	A	SECISBP2L	Missense_Mutation	p.K540N	0.04	deleterious(0.05)	possibly_damaging(0.58)
TCGA-KM-8441-01	15	77046256	77046256	G	T	SCAPER	Missense_Mutation	p.L587I	0.04	tolerated(0.16)	probably_damaging(0.97)
TCGA-KM-8441-01	15	77046257	77046257	C	A	SCAPER	Missense_Mutation	p.L586F	0.04	deleterious(0)	probably_damaging(1)
TCGA-KM-8441-01	16	31393193	31393193	G	A	ITGAX	Missense_Mutation	p.G1153R	0.29	tolerated(0.09)	benign(0.004)
TCGA-KM-8441-01	16	58550764	58550764	G	A	SETD6	Missense_Mutation	p.V242M	0.09	tolerated(1)	benign(0.008)
TCGA-KM-8441-01	16	88908341	88908346	TGCGGA	-	GALNS	In_Frame_Del	p.I93_R94del	0.23		
TCGA-KM-8441-01	16	88908355	88908355	C	T	GALNS	Missense_Mutation	p.R90Q	0.18	deleterious(0)	probably_damaging(0.999)
TCGA-KM-8441-01	17	48629513	48629513	G	T	SPATA20	Silent	p.G643G	0.31		
TCGA-KM-8441-01	19	11942848	11942848	G	A	ZNF440	Missense_Mutation	p.C286Y	0.05	deleterious(0)	probably_damaging(0.997)
TCGA-KM-8441-01	19	22575234	22575234	C	T	ZNF98	Missense_Mutation	p.C268Y	0.23	deleterious(0.02)	probably_damaging(0.999)
TCGA-KM-8441-01	19	9002616	9002616	G	T	MUC16	Missense_Mutation	p.D13400E	0.29		probably_damaging(0.922)
TCGA-KM-8441-01	1	11187847	11187847	A	G	MTOR	Missense_Mutation	p.I2017T	0.29	deleterious(0)	probably_damaging(0.995)
TCGA-KM-8441-01	1	226027678	226027678	T	C	EPHX1	Missense_Mutation	p.Y291H	0.33	tolerated(0.18)	benign(0.078)
TCGA-KM-8441-01	1	47717422	47717422	G	A	STIL	Nonsense_Mutation	p.R1085*	0.26		
TCGA-KM-8441-01	2	170428445	170428445	C	T	FASTKD1	Missense_Mutation	p.R32Q	0.05	tolerated(0.1)	benign(0.095)
TCGA-KM-8441-01	3	186395001	186395001	G	T	HRG	Nonsense_Mutation	p.E303*	0.23		
TCGA-KM-8441-01	3	52416340	52416340	G	A	DNAH1	Missense_Mutation	p.E2604K	0.08		possibly_damaging(0.842)
TCGA-KM-8441-01	4	128814529	128814529	A	C	PLK4	Missense_Mutation	p.S760R	0.03	tolerated(0.15)	benign(0.421)
TCGA-KM-8441-01	4	185138788	185138788	T	A	ENPP6	Missense_Mutation	p.Y62F	0.06	deleterious(0)	probably_damaging(0.999)
TCGA-KM-8441-01	7	130140638	130140638	C	T	MEST	Missense_Mutation	p.P219L	0.16	tolerated(0.18)	benign(0.049)
TCGA-KM-8441-01	8	21956855	21956855	C	-	FAM160B2	Frame_Shift_Del	p.Q380Sfs*11	0.30		
TCGA-KM-8441-01	9	116183413	116183413	C	T	C9orf43	Missense_Mutation	p.L126F	0.05	deleterious(0.01)	probably_damaging(0.998)
TCGA-KM-8441-01	X	153556232	153556232	G	A	TKTL1	Missense_Mutation	p.V516I	0.30	tolerated(0.11)	benign(0.014)
TCGA-KM-8442-01	10	126631810	126631810	A	-	ZRANB1	Frame_Shift_Del	p.K251Nfs*2	0.11		
TCGA-KM-8442-01	11	104897573	104897573	C	T	CASP1	Missense_Mutation	p.R371H	0.04	tolerated(0.05)	possibly_damaging(0.845)
TCGA-KM-8442-01	11	118111082	118111082	G	A	MPZL3	Silent	p.I28I	0.12		
TCGA-KM-8442-01	11	48285540	48285540	T	C	OR4X1	Missense_Mutation	p.I43T	0.20	deleterious(0.02)	possibly_damaging(0.691)
TCGA-KM-8442-01	11	50004015	50004015	G	A	OR4C12	Missense_Mutation	p.T8I	0.51	deleterious_low_confidence(0)	probably_damaging(0.998)
TCGA-KM-8442-01	12	64536390	64536390	A	C	SRGAP1	Missense_Mutation	p.N1066H	0.05	deleterious_low_confidence(0.03)	possibly_damaging(0.62)
TCGA-KM-8442-01	13	38160378	38160378	T	C	POSTN	Missense_Mutation	p.R265G	0.06	tolerated(0.62)	benign(0.008)
TCGA-KM-8442-01	16	27375167	27375167	T	C	IL4R	3'UTR		0.50		
TCGA-KM-8442-01	19	40719458	40719458	C	T	MAP3K10	Silent	p.S624S	0.48		
TCGA-KM-8442-01	19	41354576	41354576	C	T	CYP2A6	Missense_Mutation	p.E146K	0.06		benign(0.103)
TCGA-KM-8442-01	1	153631301	153631301	G	-	SNAPIN	Frame_Shift_Del	p.L29Cfs*24	0.34		
TCGA-KM-8442-01	1	157805633	157805633	G	A	CD5L	Missense_Mutation	p.S123L	0.06	tolerated(0.41)	benign(0.002)
TCGA-KM-8442-01	1	204379294	204379294	A	G	PPP1R15B	Missense_Mutation	p.S416P	0.07	deleterious(0.01)	probably_damaging(0.938)
TCGA-KM-8442-01	1	2268198	2268198	C	T	MORN1	Silent	p.P376P	0.31		
TCGA-KM-8442-01	20	44538588	44538588	A	G	PLTP	Missense_Mutation	p.W108R	0.08	tolerated(0.07)	probably_damaging(0.995)
TCGA-KM-8442-01	22	50581577	50581577	G	A	MOV10L1	Missense_Mutation	p.R762H	0.14	deleterious(0)	probably_damaging(0.998)
TCGA-KM-8442-01	2	220350135	220350135	G	T	SPEG	Silent	p.S2559S	0.05		
TCGA-KM-8442-01	2	86693720	86693720	T	G	KDM3A	Silent	p.T411T	0.12		
TCGA-KM-8442-01	4	5527059	5527059	T	C	C4orf6	Translation_Start_Site	p.M1?	0.34		benign(0.092)
TCGA-KM-8442-01	4	79792006	79792006	A	G	BMP2K	Missense_Mutation	p.Q434R	0.09	deleterious_low_confidence(0)	benign(0.069)
TCGA-KM-8442-01	5	140531290	140531290	C	T	PCDHB6	Silent	p.V484V	0.10		
TCGA-KM-8442-01	5	23521146	23521146	G	A	PRDM9	Silent	p.A122A	0.86		
TCGA-KM-8442-01	5	60067915	60067915	T	C	ELOVL7	Missense_Mutation	p.R24G	0.08	deleterious(0)	probably_damaging(0.997)
TCGA-KM-8442-01	6	11185614	11185614	C	T	NEDD9	Silent	p.T762T	0.08		
TCGA-KM-8442-01	7	100346036	100346036	G	A	ZAN	Missense_Mutation	p.G398R	0.20		possibly_damaging(0.664)
TCGA-KM-8442-01	7	143096897	143096897	C	T	EPHA1	Missense_Mutation	p.A228T	0.09	tolerated(0.34)	benign(0.001)
TCGA-KM-8442-01	7	72664019	72664020	-	T	GTF2IRD2P1	RNA		0.08		
TCGA-KM-8442-01	9	18777867	18777867	T	A	ADAMTSL1	Missense_Mutation	p.W1214R	0.10	deleterious(0)	probably_damaging(1)
TCGA-KM-8442-01	X	49084509	49084509	G	A	CACNA1F	Silent	p.G369G	0.94		
TCGA-KM-8442-01	X	70145693	70145693	A	T	SLC7A3	Missense_Mutation	p.D610E	0.13	tolerated(0.72)	benign(0.002)
TCGA-KM-8443-01	11	112101359	112101359	C	G	PTS	Missense_Mutation	p.A66G	0.49	tolerated(0.34)	benign(0.032)
TCGA-KM-8443-01	11	61291299	61291299	C	A	SYT7	Missense_Mutation	p.D378Y	0.39	deleterious(0.01)	probably_damaging(0.992)
TCGA-KM-8443-01	12	133435693	133435693	G	A	CHFR	Missense_Mutation	p.T303I	0.46	tolerated(0.16)	possibly_damaging(0.507)
TCGA-KM-8443-01	12	53169235	53169235	T	C	KRT76	Missense_Mutation	p.E251G	0.05	deleterious(0)	probably_damaging(0.949)
TCGA-KM-8443-01	12	8048219	8048219	A	G	NANOGP1	RNA		0.38		
TCGA-KM-8443-01	12	82871116	82871116	T	C	METTL25	Silent	p.C568C	0.11		
TCGA-KM-8443-01	13	23915268	23915268	T	G	SACS	Missense_Mutation	p.K916T	0.86		benign(0.268)
TCGA-KM-8443-01	15	89744250	89744250	T	C	ABHD2	3'UTR		0.10		
TCGA-KM-8443-01	16	29107506	29107506	A	T	RRN3P2	RNA		0.42		
TCGA-KM-8443-01	16	75270827	75270827	C	T	BCAR1	Missense_Mutation	p.V335M	0.06	tolerated(0.07)	probably_damaging(0.98)
TCGA-KM-8443-01	18	61323171	61323171	G	A	SERPINB3	Missense_Mutation	p.T298M	0.33	tolerated(0.26)	benign(0.317)
TCGA-KM-8443-01	19	14076447	14076447	G	A	RFX1	Missense_Mutation	p.P702S	0.46	tolerated(0.07)	possibly_damaging(0.829)
TCGA-KM-8443-01	19	38976258	38976258	C	T	RYR1	Missense_Mutation	p.R1655C	0.35		benign(0.047)
TCGA-KM-8443-01	19	4557004	4557004	G	A	SEMA6B	Missense_Mutation	p.P110S	0.20	tolerated(0.05)	possibly_damaging(0.743)
TCGA-KM-8443-01	19	7796207	7796207	T	C	CLEC4G	Splice_Site	p.X56_splice	0.22		
TCGA-KM-8443-01	19	8615207	8615207	T	A	MYO1F	Missense_Mutation	p.D313V	0.46	deleterious(0.01)	possibly_damaging(0.649)
TCGA-KM-8443-01	1	22207292	22207292	G	A	HSPG2	Missense_Mutation	p.R619C	0.93		probably_damaging(0.946)
TCGA-KM-8443-01	21	30331996	30331996	C	T	LTN1	Missense_Mutation	p.V839I	0.88	tolerated(0.27)	possibly_damaging(0.861)
TCGA-KM-8443-01	22	37334203	37334203	G	T	CSF2RB	Missense_Mutation	p.V785F	0.22	deleterious(0.01)	possibly_damaging(0.73)
TCGA-KM-8443-01	22	50987319	50987319	A	G	KLHDC7B	Missense_Mutation	p.T242A	0.20	tolerated(0.96)	benign(0.003)
TCGA-KM-8443-01	3	111671440	111671440	A	G	PHLDB2	Missense_Mutation	p.R885G	0.05	deleterious(0.01)	possibly_damaging(0.877)
TCGA-KM-8443-01	3	113890761	113890761	G	A	DRD3	Missense_Mutation	p.R27C	0.49	tolerated(0.07)	possibly_damaging(0.655)
TCGA-KM-8443-01	3	114018494	114018494	G	A	TIGIT	Missense_Mutation	p.A148T	0.18	tolerated(1)	benign(0.002)
TCGA-KM-8443-01	3	126071789	126071789	G	A	KLF15	Intron		0.18		
TCGA-KM-8443-01	3	184075816	184075816	C	G	CLCN2	Missense_Mutation	p.K183N	0.37	deleterious(0)	possibly_damaging(0.848)
TCGA-KM-8443-01	3	47041771	47041771	G	A	NBEAL2	Silent	p.G1394G	0.52		
TCGA-KM-8443-01	3	49691694	49691694	A	T	BSN	Missense_Mutation	p.T1569S	0.50		unknown(0)
TCGA-KM-8443-01	4	186283807	186283807	G	A	SNX25	Missense_Mutation	p.G795D	0.45	deleterious(0)	probably_damaging(0.997)
TCGA-KM-8443-01	5	137542006	137542009	TAAA	-	CDC23	Intron		0.31		
TCGA-KM-8443-01	5	158526463	158526463	G	T	EBF1	Silent	p.I8I	0.25		
TCGA-KM-8443-01	5	5463283	5463284	-	TA	KIAA0947	Frame_Shift_Ins	p.K1280Ifs*10	0.30		
TCGA-KM-8443-01	5	56545266	56545266	G	A	GPBP1	Missense_Mutation	p.D286N	0.15	deleterious(0.01)	possibly_damaging(0.804)
TCGA-KM-8443-01	5	56545374	56545374	G	A	GPBP1	Missense_Mutation	p.E322K	0.17	tolerated(0.19)	benign(0.046)
TCGA-KM-8443-01	5	71493836	71493836	G	A	MAP1B	Missense_Mutation	p.V1552M	0.58		probably_damaging(0.999)
TCGA-KM-8443-01	5	86675579	86675579	G	A	RASA1	Missense_Mutation	p.E839K	0.21	tolerated(0.35)	benign(0.051)
TCGA-KM-8443-01	5	9629359	9629359	G	A	TAS2R1	Silent	p.F262F	0.23		
TCGA-KM-8443-01	7	81641523	81641523	C	T	CACNA2D1	Missense_Mutation	p.A437T	0.18	deleterious(0)	possibly_damaging(0.794)
TCGA-KM-8443-01	8	60031454	60031454	A	T	TOX	Nonsense_Mutation	p.Y31*	0.43		
TCGA-KM-8443-01	8	72211306	72211306	G	T	EYA1	Missense_Mutation	p.Q268K	0.03	tolerated(0.14)	probably_damaging(0.989)
TCGA-KM-8443-01	8	95264412	95264412	C	T	GEM	Missense_Mutation	p.G150R	0.50	deleterious(0)	probably_damaging(1)
TCGA-KM-8443-01	9	1055927	1055929	AAT	-	DMRT2	Intron		0.39		
TCGA-KM-8443-01	9	133748274	133748274	A	G	ABL1	Missense_Mutation	p.Y331C	0.07	deleterious(0)	probably_damaging(1)
TCGA-KM-8443-01	X	62855080	62855080	G	T	ARHGEF9	3'UTR		0.50		
TCGA-KM-8476-01	10	115381805	115381805	G	A	NRAP	Silent	p.F864F	0.07		
TCGA-KM-8476-01	11	100999187	100999187	C	T	PGR	Nonsense_Mutation	p.W205*	0.14		
TCGA-KM-8476-01	11	122931403	122931403	G	A	HSPA8	Silent	p.V103V	0.04		
TCGA-KM-8476-01	12	126137027	126137027	C	T	TMEM132B	Missense_Mutation	p.T647M	0.09	deleterious(0)	probably_damaging(0.998)
TCGA-KM-8476-01	12	4854614	4854614	C	T	GALNT8	Missense_Mutation	p.R294W	0.06	deleterious(0.03)	possibly_damaging(0.494)
TCGA-KM-8476-01	13	30110110	30110110	G	A	SLC7A1	Silent	p.I72I	0.71		
TCGA-KM-8476-01	14	31844040	31844040	G	A	HEATR5A	Nonsense_Mutation	p.R322*	0.09		
TCGA-KM-8476-01	16	82032717	82032717	C	A	SDR42E1	Nonstop_Mutation	p.*394Lext*6	0.38		
TCGA-KM-8476-01	16	84793019	84793019	C	A	USP10	Missense_Mutation	p.F445L	0.11	tolerated(0.71)	benign(0.008)
TCGA-KM-8476-01	17	10395792	10395792	C	T	MYH1	Missense_Mutation	p.V1921I	0.08	tolerated(0.06)	possibly_damaging(0.728)
TCGA-KM-8476-01	18	19116141	19116141	G	A	ESCO1	Silent	p.D683D	0.44		
TCGA-KM-8476-01	18	72114400	72114400	G	T	FAM69C	Missense_Mutation	p.A106D	0.08	deleterious(0)	probably_damaging(0.997)
TCGA-KM-8476-01	19	10395799	10395799	T	C	ICAM1	Missense_Mutation	p.Y479H	0.07	tolerated(0.38)	benign(0)
TCGA-KM-8476-01	1	152060616	152060616	G	A	TCHHL1	Missense_Mutation	p.P2S	0.73	tolerated(0.13)	benign(0.417)
TCGA-KM-8476-01	1	173921192	173921192	C	A	RC3H1	Missense_Mutation	p.G819C	0.08	deleterious(0)	probably_damaging(0.984)
TCGA-KM-8476-01	1	248343361	248343361	C	T	OR2M2	Missense_Mutation	p.T25M	0.75	tolerated(0.2)	benign(0.14)
TCGA-KM-8476-01	1	35658491	35658491	T	C	SFPQ	Missense_Mutation	p.S54G	0.31	tolerated_low_confidence(0.35)	unknown(0)
TCGA-KM-8476-01	1	40537164	40537164	G	A	CAP1	Missense_Mutation	p.G463R	0.12	deleterious(0.03)	possibly_damaging(0.863)
TCGA-KM-8476-01	20	33575696	33575696	C	T	MYH7B	Silent	p.I507I	0.47		
TCGA-KM-8476-01	22	21800335	21800335	C	G	HIC2	Missense_Mutation	p.P384R	0.39	tolerated(0.07)	benign(0.011)
TCGA-KM-8476-01	22	22842485	22842485	C	T	ZNF280B	Silent	p.S413S	0.43		
TCGA-KM-8476-01	22	24175863	24175863	A	G	SMARCB1	Missense_Mutation	p.K364R	0.08	deleterious(0.04)	probably_damaging(0.912)
TCGA-KM-8476-01	22	39884300	39884300	C	T	MGAT3	Silent	p.D316D	0.58		
TCGA-KM-8476-01	3	189455532	189455532	C	A	TP63	Missense_Mutation	p.F22L	0.41	tolerated_low_confidence(1)	benign(0.001)
TCGA-KM-8476-01	3	52365211	52365211	G	A	DNAH1	Missense_Mutation	p.V307I	0.07		benign(0.211)
TCGA-KM-8476-01	4	159780275	159780275	G	A	FNIP2	Silent	p.R308R	0.04		
TCGA-KM-8476-01	4	80327734	80327734	C	T	GK2	Missense_Mutation	p.V541I	0.43	tolerated(1)	benign(0.003)
TCGA-KM-8476-01	5	153065877	153065877	C	T	GRIA1	Silent	p.D384D	0.08		
TCGA-KM-8476-01	5	180053237	180053237	G	A	FLT4	Missense_Mutation	p.R378C	0.07	deleterious(0)	possibly_damaging(0.893)
TCGA-KM-8476-01	6	12162043	12162043	G	A	HIVEP1	Missense_Mutation	p.D2287N	0.18	tolerated(0.26)	benign(0.001)
TCGA-KM-8476-01	6	146720023	146720023	G	T	GRM1	Silent	p.L616L	0.82		
TCGA-KM-8476-01	7	150555109	150555109	C	T	AOC1	Silent	p.R517R	0.25		
TCGA-KM-8476-01	7	5253982	5253982	T	C	WIPI2	Intron		0.48		
TCGA-KM-8476-01	8	131922101	131922101	G	A	ADCY8	Missense_Mutation	p.S498L	0.30	tolerated(0.11)	probably_damaging(0.982)
TCGA-KM-8476-01	8	8748357	8748357	T	A	MFHAS1	Missense_Mutation	p.N738Y	0.07	deleterious(0.01)	probably_damaging(0.997)
TCGA-KM-8476-01	9	131245156	131245156	A	G	ODF2	Missense_Mutation	p.Q326R	0.06	tolerated(0.28)	benign(0.007)
TCGA-KM-8476-01	9	134165625	134165625	G	A	PPAPDC3	Missense_Mutation	p.A81T	0.45	tolerated(0.12)	probably_damaging(0.99)
TCGA-KM-8476-01	9	78749078	78749078	C	T	PCSK5	Missense_Mutation	p.A421V	0.33	deleterious(0.01)	probably_damaging(0.989)
TCGA-KM-8476-01	X	48434802	48434802	C	T	RBM3	Missense_Mutation	p.S104F	0.07	tolerated(0.48)	possibly_damaging(0.831)
TCGA-KM-8476-01	X	77913571	77913571	G	A	ZCCHC5	Missense_Mutation	p.A116V	0.06	deleterious_low_confidence(0.02)	benign(0)
TCGA-KM-8477-01	10	129866455	129866455	C	T	PTPRE	Silent	p.F304F	0.19		
TCGA-KM-8477-01	10	69881358	69881358	G	A	MYPN	Missense_Mutation	p.G55R	0.40	tolerated(0.53)	possibly_damaging(0.563)
TCGA-KM-8477-01	10	70426913	70426913	A	G	TET1	Missense_Mutation	p.I1525V	0.38	deleterious(0.01)	benign(0.257)
TCGA-KM-8477-01	10	75519464	75519464	G	A	SEC24C	Silent	p.P131P	0.20		
TCGA-KM-8477-01	11	121444978	121444978	G	C	SORL1	Missense_Mutation	p.Q1122H	0.34	deleterious_low_confidence(0.01)	probably_damaging(0.967)
TCGA-KM-8477-01	11	55762021	55762021	G	A	OR5F1	Silent	p.L27L	0.37		
TCGA-KM-8477-01	11	71932761	71932761	C	T	FOLR2	Silent	p.L241L	0.13		
TCGA-KM-8477-01	12	125621360	125621360	T	C	AACS	Silent	p.L611L	0.10		
TCGA-KM-8477-01	12	1742019	1742019	G	A	WNT5B	Nonsense_Mutation	p.W92*	0.09		
TCGA-KM-8477-01	12	50472361	50472361	G	A	ASIC1	Splice_Site	p.X332_splice	0.21		
TCGA-KM-8477-01	12	6574085	6574085	A	G	VAMP1	Missense_Mutation	p.I104T	0.10	deleterious(0)	benign(0.141)
TCGA-KM-8477-01	14	50619875	50619875	G	A	SOS2	Missense_Mutation	p.R692W	0.05	deleterious(0)	probably_damaging(1)
TCGA-KM-8477-01	17	26708409	26708409	C	T	SARM1	Missense_Mutation	p.P186S	0.12	tolerated(0.79)	benign(0.026)
TCGA-KM-8477-01	17	75471586	75471586	A	G	SEPT9	Intron		0.07		
TCGA-KM-8477-01	19	12296934	12296934	A	C	ZNF136	Missense_Mutation	p.K46Q	0.35	tolerated(0.12)	benign(0.037)
TCGA-KM-8477-01	19	33702229	33702229	G	A	SLC7A10	Silent	p.F306F	0.12		
TCGA-KM-8477-01	1	111857960	111857960	G	A	CHIA	Missense_Mutation	p.R128H	0.06	deleterious(0.05)	benign(0.377)
TCGA-KM-8477-01	1	145594109	145594109	G	T	POLR3C	Missense_Mutation	p.Q485K	0.41	tolerated(0.42)	benign(0.108)
TCGA-KM-8477-01	20	36470751	36470752	-	A	CTNNBL1	Frame_Shift_Ins	p.M442Nfs*6	0.27		
TCGA-KM-8477-01	20	61386087	61386087	G	T	NTSR1	Silent	p.L255L	0.43		
TCGA-KM-8477-01	2	202082521	202082521	C	T	CASP10	3'UTR		0.34		
TCGA-KM-8477-01	2	202901005	202901005	C	T	FZD7	Silent	p.G545G	0.06		
TCGA-KM-8477-01	2	84928427	84928427	G	T	DNAH6	Silent	p.L2675L	0.37		
TCGA-KM-8477-01	5	13759067	13759067	C	T	DNAH5	Missense_Mutation	p.R3436H	0.07		possibly_damaging(0.812)
TCGA-KM-8477-01	5	138209476	138209476	T	G	LRRTM2	Silent	p.L258L	0.36		
TCGA-KM-8477-01	5	139915105	139915105	A	G	ANKHD1	Missense_Mutation	p.T2337A	0.05		possibly_damaging(0.899)
TCGA-KM-8477-01	6	30879492	30879492	T	A	GTF2H4	Missense_Mutation	p.L258Q	0.09	tolerated(0.36)	possibly_damaging(0.562)
TCGA-KM-8477-01	6	44243233	44243233	C	A	TMEM151B	Missense_Mutation	p.L224M	0.50	deleterious(0)	probably_damaging(0.952)
TCGA-KM-8477-01	7	129037098	129037098	G	T	AHCYL2	Missense_Mutation	p.Q252H	0.30	deleterious(0)	possibly_damaging(0.618)
TCGA-KM-8477-01	8	102705065	102705065	C	T	NCALD	Silent	p.E146E	0.06		
TCGA-KM-8477-01	9	112219611	112219612	AT	-	PTPN3	Frame_Shift_Del	p.Y69Ffs*6	0.14		
TCGA-KM-8477-01	X	47041266	47041266	G	A	RBM10	Splice_Site	p.X565_splice	0.78		
TCGA-KM-8639-01	10	121652313	121652313	A	C	SEC23IP	Missense_Mutation	p.N7H	0.26	deleterious_low_confidence(0)	probably_damaging(0.997)
TCGA-KM-8639-01	10	25464834	25464834	G	A	GPR158	Nonsense_Mutation	p.W162*	0.39		
TCGA-KM-8639-01	11	102206944	102206944	T	G	BIRC3	Missense_Mutation	p.H524Q	0.41	tolerated(0.52)	benign(0.026)
TCGA-KM-8639-01	11	5717467	5717467	A	G	TRIM22	Missense_Mutation	p.D2G	0.24	tolerated(0.06)	benign(0.066)
TCGA-KM-8639-01	11	66008957	66008957	A	G	PACS1	Missense_Mutation	p.H830R	0.16	deleterious(0.05)	benign(0.216)
TCGA-KM-8639-01	14	20897823	20897823	T	A	KLHL33	Missense_Mutation	p.E296V	0.05	deleterious(0.01)	benign(0.013)
TCGA-KM-8639-01	14	63174364	63174364	C	T	KCNH5	Silent	p.S943S	0.30		
TCGA-KM-8639-01	15	42143342	42143342	C	T	SPTBN5	Missense_Mutation	p.A3584T	0.29		benign(0.222)
TCGA-KM-8639-01	16	1822532	1822532	G	A	MRPS34	Intron		0.29		
TCGA-KM-8639-01	16	46991077	46991077	G	A	DNAJA2	Missense_Mutation	p.T368I	0.09	tolerated(0.14)	benign(0.017)
TCGA-KM-8639-01	16	68961835	68961835	C	G	TANGO6	Missense_Mutation	p.S831C	0.21	deleterious(0.04)	benign(0.027)
TCGA-KM-8639-01	19	10943859	10943865	CCAGCCG	-	DNM2	3'Flank		0.33		
TCGA-KM-8639-01	19	12501695	12501695	C	A	ZNF799	Missense_Mutation	p.C506F	0.27	deleterious(0.01)	probably_damaging(0.982)
TCGA-KM-8639-01	19	19790063	19790063	T	C	ZNF101	Missense_Mutation	p.C89R	0.03	tolerated(0.15)	benign(0.003)
TCGA-KM-8639-01	1	109840820	109840820	C	A	MYBPHL	Missense_Mutation	p.D69Y	0.27	deleterious(0)	probably_damaging(0.943)
TCGA-KM-8639-01	1	26795677	26795681	CCCTT	-	DHDDS	3'UTR		0.23		
TCGA-KM-8639-01	20	42825743	42825743	G	C	OSER1	Nonsense_Mutation	p.Y276*	0.33		
TCGA-KM-8639-01	22	26351240	26351240	G	C	MYO18B	Missense_Mutation	p.Q2022H	0.20	deleterious(0.04)	benign(0.029)
TCGA-KM-8639-01	22	36122931	36122931	G	A	APOL5	Silent	p.T272T	0.09		
TCGA-KM-8639-01	2	206110537	206110538	-	A	PARD3B	Frame_Shift_Ins	p.S666Ifs*34	0.18		
TCGA-KM-8639-01	2	74492256	74492256	G	C	SLC4A5	Missense_Mutation	p.D179E	0.06	tolerated(0.88)	benign(0.042)
TCGA-KM-8639-01	4	146044692	146044692	A	G	ABCE1	Missense_Mutation	p.Y527C	0.04	deleterious(0)	probably_damaging(1)
TCGA-KM-8639-01	4	74012976	74012979	TAAC	-	ANKRD17	Frame_Shift_Del	p.V580Nfs*4	0.38		
TCGA-KM-8639-01	5	98192081	98192081	T	C	CHD1	3'UTR		0.26		
TCGA-KM-8639-01	6	123318661	123318661	A	C	CLVS2	5'UTR		0.21		
TCGA-KM-8639-01	6	160210587	160210587	T	C	TCP1	5'UTR		0.15		
TCGA-KM-8639-01	7	135079031	135079031	T	C	CNOT4	Silent	p.E422E	0.24		
TCGA-KM-8639-01	7	40132819	40132819	C	G	CDK13	Missense_Mutation	p.P1224R	0.30	deleterious_low_confidence(0.05)	probably_damaging(0.998)
TCGA-KM-8639-01	9	135779084	135779093	CGGAGGAGCC	-	TSC1	Frame_Shift_Del	p.R718Pfs*3	0.55		
TCGA-KM-8639-01	X	100183363	100183363	C	G	XKRX	5'UTR		0.56		
TCGA-KM-8639-01	X	153220585	153220585	T	C	HCFC1	Missense_Mutation	p.N1089D	0.36	tolerated_low_confidence(0.05)	benign(0.011)
TCGA-KN-8418-01	11	117163878	117163880	CAG	-	BACE1	In_Frame_Del	p.L244del	0.64		
TCGA-KN-8418-01	11	124637029	124637029	A	G	MSANTD2	3'UTR		0.08		
TCGA-KN-8418-01	11	27679447	27679447	C	T	BDNF	Missense_Mutation	p.S304N	0.05	tolerated(0.96)	benign(0)
TCGA-KN-8418-01	12	72425664	72425664	A	G	TPH2	3'UTR		0.16		
TCGA-KN-8418-01	16	840180	840180	T	C	CHTF18	Missense_Mutation	p.S204P	0.06	tolerated(0.44)	benign(0)
TCGA-KN-8418-01	17	39406712	39406712	G	A	KRTAP9-4	3'UTR		0.07		
TCGA-KN-8418-01	17	65889530	65889530	C	T	BPTF	Silent	p.T700T	0.04		
TCGA-KN-8418-01	17	74729077	74729077	C	T	METTL23	Silent	p.S34S	0.05		
TCGA-KN-8418-01	17	7578396	7578396	G	T	TP53	Missense_Mutation	p.H178Q	0.84	deleterious(0)	probably_damaging(1)
TCGA-KN-8418-01	19	13265306	13265306	A	T	IER2	3'UTR		0.53		
TCGA-KN-8418-01	19	13340907	13340907	G	A	CACNA1A	Silent	p.D1839D	0.50		
TCGA-KN-8418-01	19	38782514	38782514	G	A	SPINT2	Silent	p.L209L	0.40		
TCGA-KN-8418-01	1	110169839	110169839	A	G	AMPD2	Missense_Mutation	p.E308G	0.05	tolerated(0.11)	benign(0.003)
TCGA-KN-8418-01	20	62664444	62664444	C	T	PRPF6	3'UTR		0.29		
TCGA-KN-8418-01	21	32624307	32624307	G	A	TIAM1	Missense_Mutation	p.R388W	0.07	deleterious(0.01)	probably_damaging(0.993)
TCGA-KN-8418-01	22	42456379	42456379	G	A	NAGA	Silent	p.L380L	0.27		
TCGA-KN-8418-01	2	220354242	220354242	G	A	SPEG	Silent	p.S2834S	0.82		
TCGA-KN-8418-01	2	242283310	242283310	C	A	SEPT2	Silent	p.L280L	0.89		
TCGA-KN-8418-01	2	65299474	65299474	A	G	CEP68	Missense_Mutation	p.E415G	0.11	tolerated(0.06)	possibly_damaging(0.57)
TCGA-KN-8418-01	2	73493739	73493739	T	G	FBXO41	Missense_Mutation	p.Q326P	0.79	deleterious(0.01)	benign(0.003)
TCGA-KN-8418-01	3	196434505	196434505	C	A	CEP19	Missense_Mutation	p.V141F	0.39	deleterious(0.03)	possibly_damaging(0.854)
TCGA-KN-8418-01	4	100738026	100738026	A	G	DAPP1	5'UTR		0.13		
TCGA-KN-8418-01	5	41045851	41045851	C	T	MROH2B	Silent	p.E611E	0.44		
TCGA-KN-8418-01	6	32049931	32049931	T	C	RNA5SP206	5'Flank		0.07		
TCGA-KN-8418-01	7	1785380	1785380	C	T	ELFN1	Missense_Mutation	p.S383F	0.37	deleterious(0)	probably_damaging(1)
TCGA-KN-8418-01	8	12287958	12287958	G	T	FAM86B2	Missense_Mutation	p.H81Q	0.36	tolerated(0.33)	benign(0.006)
TCGA-KN-8418-01	9	139395222	139395222	C	T	NOTCH1	Missense_Mutation	p.A1906T	0.43	tolerated(0.11)	benign(0.179)
TCGA-KN-8418-01	9	7798465	7798465	T	C	TMEM261	3'UTR		0.11		
TCGA-KN-8418-01	X	41448838	41448838	T	C	CASK	Missense_Mutation	p.D388G	0.05	deleterious(0)	possibly_damaging(0.877)
TCGA-KN-8419-01	10	64567553	64567553	A	T	ADO	3'UTR		0.44		
TCGA-KN-8419-01	11	63719920	63719920	G	A	NAA40	Missense_Mutation	p.R98Q	0.49	tolerated(0.4)	benign(0.082)
TCGA-KN-8419-01	12	121471492	121471492	C	A	OASL	Missense_Mutation	p.V85L	0.15	tolerated(0.1)	possibly_damaging(0.769)
TCGA-KN-8419-01	12	52777475	52777475	G	A	KRT84	Silent	p.I218I	0.16		
TCGA-KN-8419-01	14	20010579	20010579	T	A	POTEM	Intron		0.23		
TCGA-KN-8419-01	14	20010669	20010669	T	C	POTEM	Intron		0.26		
TCGA-KN-8419-01	14	65245965	65245965	C	T	SPTB	Splice_Site	p.X1492_splice	0.16		
TCGA-KN-8419-01	17	34324813	34324813	T	C	CCL15	Missense_Mutation	p.Y111C	0.15	tolerated(0.18)	benign(0.288)
TCGA-KN-8419-01	17	4999543	4999546	TAAA	-	ZFP3	3'UTR		0.44		
TCGA-KN-8419-01	17	56693673	56693673	C	T	TEX14	Nonsense_Mutation	p.W216*	0.23		
TCGA-KN-8419-01	18	28926018	28926018	G	A	DSG1	Missense_Mutation	p.G653R	0.55	tolerated(0.06)	benign(0.376)
TCGA-KN-8419-01	18	60242420	60242420	A	T	ZCCHC2	Missense_Mutation	p.N1036Y	0.24	deleterious(0.02)	possibly_damaging(0.506)
TCGA-KN-8419-01	19	1073206	1073206	C	A	HMHA1	Silent	p.V176V	0.40		
TCGA-KN-8419-01	19	56241255	56241255	A	G	NLRP9	Missense_Mutation	p.S646P	0.10	deleterious(0.02)	possibly_damaging(0.794)
TCGA-KN-8419-01	1	70897872	70897872	C	A	CTH	Silent	p.A277A	0.29		
TCGA-KN-8419-01	20	31477116	31477116	A	G	EFCAB8	Missense_Mutation	p.T193A	0.08		
TCGA-KN-8419-01	21	33032038	33032038	C	T	SOD1	5'UTR		0.25		
TCGA-KN-8419-01	22	31266429	31266429	C	T	OSBP2	Silent	p.D289D	0.15		
TCGA-KN-8419-01	2	136527387	136527387	A	G	UBXN4	Silent	p.E217E	0.14		
TCGA-KN-8419-01	2	28635053	28635053	A	G	FOSL2	Missense_Mutation	p.K240R	0.09	tolerated(0.36)	benign(0.395)
TCGA-KN-8419-01	4	57182677	57182677	G	A	KIAA1211	Silent	p.P1003P	0.18		
TCGA-KN-8419-01	6	39507924	39507924	T	C	KIF6	Silent	p.R500R	0.05		
TCGA-KN-8419-01	7	150171183	150171183	C	T	GIMAP8	Missense_Mutation	p.R256C	0.09	tolerated(0.05)	probably_damaging(0.986)
TCGA-KN-8419-01	7	50596997	50596997	C	T	DDC	Missense_Mutation	p.R160Q	0.09	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8419-01	8	142221657	142221657	G	A	SLC45A4	Missense_Mutation	p.L761F	0.11	tolerated_low_confidence(0.09)	benign(0)
TCGA-KN-8419-01	9	129642226	129642226	A	G	ZBTB34	Missense_Mutation	p.D179G	0.08	tolerated(0.15)	benign(0.418)
TCGA-KN-8419-01	9	74300250	74300250	T	C	TMEM2	Missense_Mutation	p.T1339A	0.22	deleterious(0.04)	benign(0.005)
TCGA-KN-8421-01	11	123886665	123886665	G	A	OR10G4	Silent	p.P128P	0.34		
TCGA-KN-8421-01	11	64664265	64664265	C	T	ATG2A	Missense_Mutation	p.G1743S	0.37	tolerated(0.16)	benign(0.033)
TCGA-KN-8421-01	12	13367645	13367645	G	C	EMP1	3'UTR		0.36		
TCGA-KN-8421-01	13	41704863	41704863	C	A	KBTBD6	Missense_Mutation	p.W595C	0.91	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8421-01	15	41870560	41870560	G	C	TYRO3	3'UTR		0.08		
TCGA-KN-8421-01	15	73925620	73925620	G	A	NPTN	5'UTR		0.53		
TCGA-KN-8421-01	17	59118255	59118255	T	G	BCAS3	Splice_Site	p.X692_splice	0.73		
TCGA-KN-8421-01	19	54561798	54561798	A	T	VSTM1	Silent	p.V39V	0.07		
TCGA-KN-8421-01	19	55447692	55447692	C	T	NLRP7	Missense_Mutation	p.R746H	0.34	tolerated(0.13)	benign(0.002)
TCGA-KN-8421-01	19	8387236	8387236	T	G	RPS28	3'UTR		0.19		
TCGA-KN-8421-01	1	180945772	180945772	T	C	STX6	Silent	p.Q234Q	0.92		
TCGA-KN-8421-01	1	37947246	37947246	T	C	ZC3H12A	Missense_Mutation	p.F210L	0.10	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8421-01	1	84876612	84876612	A	T	DNASE2B	Silent	p.P159P	0.91		
TCGA-KN-8421-01	20	16717906	16717906	C	T	SNRPB2	Nonsense_Mutation	p.R80*	0.07		
TCGA-KN-8421-01	20	43739299	43739299	C	T	WFDC5	Missense_Mutation	p.R68H	0.40	deleterious(0.02)	probably_damaging(0.998)
TCGA-KN-8421-01	21	41033159	41033159	G	A	B3GALT5	Missense_Mutation	p.V225M	0.22	tolerated(0.13)	probably_damaging(0.996)
TCGA-KN-8421-01	2	136473266	136473266	T	A	R3HDM1	Splice_Site	p.X926_splice	0.09		
TCGA-KN-8421-01	2	153573942	153573942	G	A	PRPF40A	Silent	p.G4G	0.36		
TCGA-KN-8421-01	2	165987817	165987817	G	T	SCN3A	Silent	p.L834L	0.05		
TCGA-KN-8421-01	2	56420144	56420144	G	A	CCDC85A	Missense_Mutation	p.R270H	0.09	tolerated_low_confidence(1)	benign(0)
TCGA-KN-8421-01	3	113114596	113114596	C	T	WDR52	Splice_Site	p.X630_splice	0.82		
TCGA-KN-8421-01	3	132320337	132320337	T	C	ACKR4	3'UTR		0.69		
TCGA-KN-8421-01	3	51433500	51433500	C	T	VPRBP	3'UTR		0.85		
TCGA-KN-8421-01	4	184241268	184241268	T	C	CLDN22	Missense_Mutation	p.N35S	0.05	tolerated(0.26)	benign(0.038)
TCGA-KN-8421-01	4	184366127	184366127	A	G	CDKN2AIP	Silent	p.E59E	0.07		
TCGA-KN-8421-01	5	140203532	140203532	G	A	PCDHA5	Silent	p.A724A	0.05		
TCGA-KN-8421-01	7	82579951	82579951	T	C	PCLO	Missense_Mutation	p.Y3318C	0.06		unknown(0)
TCGA-KN-8421-01	8	143694490	143694490	G	A	ARC	Silent	p.P381P	0.51		
TCGA-KN-8421-01	9	12694105	12694105	A	G	TYRP1	Missense_Mutation	p.R37G	0.06	tolerated(0.14)	benign(0.097)
TCGA-KN-8421-01	9	8521528	8521528	C	G	PTPRD	Missense_Mutation	p.R237T	0.07	tolerated(0.15)	probably_damaging(0.995)
TCGA-KN-8422-01	11	117214946	117214946	G	T	CEP164	Silent	p.L49L	0.46		
TCGA-KN-8422-01	11	89421805	89421805	G	C	FOLH1B	RNA		0.38		
TCGA-KN-8422-01	12	49432249	49432249	C	A	KMT2D	Missense_Mutation	p.V2964F	0.26		possibly_damaging(0.731)
TCGA-KN-8422-01	13	20220943	20220943	G	C	MPHOSPH8	Missense_Mutation	p.E244Q	0.38	deleterious_low_confidence(0)	possibly_damaging(0.838)
TCGA-KN-8422-01	17	48696111	48696111	G	A	CACNA1G	Silent	p.V1841V	0.08		
TCGA-KN-8422-01	17	54672461	54672461	G	T	NOG	3'UTR		0.45		
TCGA-KN-8422-01	19	12985463	12985463	C	A	MAST1	Missense_Mutation	p.P1498T	0.43	deleterious_low_confidence(0.01)	benign(0.068)
TCGA-KN-8422-01	19	17321179	17321179	A	G	MYO9B	Missense_Mutation	p.E1929G	0.07	deleterious(0.05)	probably_damaging(0.971)
TCGA-KN-8422-01	19	52149193	52149193	G	A	SIGLEC14	Missense_Mutation	p.T181M	0.15	tolerated(0.48)	benign(0.077)
TCGA-KN-8422-01	19	52909852	52909852	C	T	ZNF528	Missense_Mutation	p.A76V	0.26	tolerated(0.41)	benign(0.158)
TCGA-KN-8422-01	19	55450827	55450827	G	A	NLRP7	Missense_Mutation	p.L454F	0.38	deleterious(0.03)	possibly_damaging(0.742)
TCGA-KN-8422-01	1	150432553	150432553	A	G	RPRD2	Missense_Mutation	p.K391E	0.05	deleterious_low_confidence(0.01)	possibly_damaging(0.872)
TCGA-KN-8422-01	1	156877478	156877478	T	C	PEAR1	Missense_Mutation	p.F241L	0.04	tolerated(0.14)	benign(0.045)
TCGA-KN-8422-01	1	158576392	158576392	T	A	OR10Z1	Missense_Mutation	p.L55Q	0.20	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8422-01	1	226349254	226349255	-	TTC	ACBD3	In_Frame_Ins	p.E235dup	0.21		
TCGA-KN-8422-01	1	32280580	32280580	G	T	SPOCD1	Missense_Mutation	p.L119I	0.05	deleterious(0.01)	possibly_damaging(0.606)
TCGA-KN-8422-01	1	53676357	53676357	C	G	CPT2	Missense_Mutation	p.H337Q	0.26	tolerated(0.44)	possibly_damaging(0.795)
TCGA-KN-8422-01	2	119750740	119750740	C	-	MARCO	Frame_Shift_Del	p.R432Efs*114	0.19		
TCGA-KN-8422-01	3	33586217	33586217	G	A	CLASP2	Silent	p.H1098H	0.25		
TCGA-KN-8422-01	3	5025274	5025274	A	C	BHLHE40	Missense_Mutation	p.Q379P	0.16	tolerated(0.57)	benign(0.002)
TCGA-KN-8422-01	3	88205252	88205252	C	A	C3orf38	Missense_Mutation	p.L153I	0.08	deleterious(0.02)	probably_damaging(0.997)
TCGA-KN-8422-01	4	115767025	115767025	A	T	NDST4	Missense_Mutation	p.I690N	0.14	deleterious(0)	probably_damaging(0.991)
TCGA-KN-8422-01	7	7477054	7477054	T	C	COL28A1	Missense_Mutation	p.T588A	0.08	tolerated(0.66)	benign(0)
TCGA-KN-8423-01	10	135193598	135193598	A	G	PAOX	Missense_Mutation	p.K93E	0.16	tolerated(1)	benign(0.018)
TCGA-KN-8423-01	10	15172216	15172216	C	T	NMT2	Missense_Mutation	p.R272K	0.05	deleterious(0.01)	benign(0.156)
TCGA-KN-8423-01	10	46998903	46998903	C	T	GPRIN2	Missense_Mutation	p.P8L	0.25	deleterious_low_confidence(0.02)	benign(0.067)
TCGA-KN-8423-01	13	77714270	77714270	G	A	MYCBP2	Missense_Mutation	p.A2439V	0.08		probably_damaging(0.914)
TCGA-KN-8423-01	14	38725376	38725376	C	T	CLEC14A	5'UTR		0.38		
TCGA-KN-8423-01	15	42052530	42052530	A	G	MGA	Missense_Mutation	p.I2401V	0.06	tolerated_low_confidence(1)	benign(0.001)
TCGA-KN-8423-01	17	11772506	11772506	A	G	DNAH9	Missense_Mutation	p.D3330G	0.10		benign(0.371)
TCGA-KN-8423-01	17	26972065	26972065	A	G	KIAA0100	Missense_Mutation	p.F4L	0.24	tolerated_low_confidence(1)	unknown(0)
TCGA-KN-8423-01	17	7577566	7577566	T	C	TP53	Missense_Mutation	p.N239D	0.60	deleterious(0)	probably_damaging(1)
TCGA-KN-8423-01	19	18879483	18879483	C	T	CRTC1	Silent	p.P416P	0.08		
TCGA-KN-8423-01	19	38900726	38900726	G	A	RASGRP4	Missense_Mutation	p.P659L	0.05	deleterious_low_confidence(0)	possibly_damaging(0.494)
TCGA-KN-8423-01	1	19438915	19438915	T	C	UBR4	Intron		0.27		
TCGA-KN-8423-01	20	2998555	2998555	A	G	PTPRA	Missense_Mutation	p.K346R	0.07	deleterious(0.05)	probably_damaging(0.988)
TCGA-KN-8423-01	2	143718278	143718278	T	C	KYNU	Missense_Mutation	p.V223A	0.06	deleterious(0)	probably_damaging(0.945)
TCGA-KN-8423-01	2	152436076	152436076	C	G	NEB	Missense_Mutation	p.A5494P	0.44		probably_damaging(0.999)
TCGA-KN-8423-01	5	137089608	137089608	A	G	HNRNPA0	Missense_Mutation	p.F50L	0.20	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8423-01	5	35957478	35957478	A	T	UGT3A1	Missense_Mutation	p.V296D	0.24	deleterious(0)	probably_damaging(0.992)
TCGA-KN-8423-01	5	80504195	80504195	A	G	RASGRF2	Missense_Mutation	p.M1032V	0.11	deleterious(0.01)	benign(0.017)
TCGA-KN-8423-01	7	123119977	123119977	C	G	IQUB	Missense_Mutation	p.A428P	0.39	tolerated(0.09)	benign(0.167)
TCGA-KN-8423-01	7	27135402	27135402	C	T	HOXA1	Missense_Mutation	p.A44T	0.05	tolerated(0.72)	probably_damaging(0.992)
TCGA-KN-8423-01	7	48147910	48147911	-	GGCT	UPP1	Frame_Shift_Ins	p.V299Afs*30	0.64		
TCGA-KN-8423-01	9	74349912	74349912	T	C	TMEM2	Splice_Site	p.X402_splice	0.07		
TCGA-KN-8423-01	X	30864163	30864164	AA	-	TAB3	Intron		0.10		
TCGA-KN-8423-01	X	48542223	48542223	A	G	WAS	5'UTR		0.08		
TCGA-KN-8424-01	10	135346309	135346309	T	C	CYP2E1	Silent	p.H254H	0.27		
TCGA-KN-8424-01	10	135346310	135346310	C	A	CYP2E1	Missense_Mutation	p.Q255K	0.27	tolerated(0.32)	benign(0.001)
TCGA-KN-8424-01	10	64957252	64957253	-	A	JMJD1C	Frame_Shift_Ins	p.N1855*	0.22		
TCGA-KN-8424-01	12	123282632	123282632	A	T	CCDC62	Missense_Mutation	p.I288F	0.22	deleterious(0)	benign(0.3)
TCGA-KN-8424-01	12	62954344	62954344	A	T	MON2	Silent	p.V1161V	0.21		
TCGA-KN-8424-01	12	75895756	75895756	C	T	KRR1	Missense_Mutation	p.E286K	0.41	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8424-01	14	106303280	106303280	G	A	IGHD	3'UTR		0.25		
TCGA-KN-8424-01	14	31107412	31107412	A	G	SCFD1	Missense_Mutation	p.N132D	0.23	deleterious(0.04)	benign(0.035)
TCGA-KN-8424-01	17	73566231	73566231	T	-	LLGL2	Frame_Shift_Del	p.V590Gfs*134	0.37		
TCGA-KN-8424-01	17	73826730	73826730	C	T	UNC13D	Missense_Mutation	p.D880N	0.10	tolerated(0.18)	benign(0.005)
TCGA-KN-8424-01	17	74733037	74733037	T	C	SRSF2	Missense_Mutation	p.E69G	0.08	deleterious(0)	possibly_damaging(0.858)
TCGA-KN-8424-01	17	7574017	7574017	C	T	TP53	Missense_Mutation	p.R337H	0.46	tolerated(0.09)	probably_damaging(0.975)
TCGA-KN-8424-01	17	7578403	7578403	C	A	TP53	Missense_Mutation	p.C176F	0.26	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8424-01	18	56063457	56063457	C	T	NEDD4L	Missense_Mutation	p.L962F	0.28	tolerated(0.45)	probably_damaging(0.973)
TCGA-KN-8424-01	19	1236022	1236022	C	T	C19orf26	Silent	p.S26S	0.21		
TCGA-KN-8424-01	19	44619837	44619837	A	G	ZNF225	Intron		0.08		
TCGA-KN-8424-01	19	49208619	49208619	G	A	FUT2	3'UTR		0.17		
TCGA-KN-8424-01	19	7504944	7504944	G	A	ARHGEF18	Missense_Mutation	p.A40T	0.14	deleterious_low_confidence(0.04)	benign(0.027)
TCGA-KN-8424-01	1	113062943	113062943	A	G	WNT2B	Missense_Mutation	p.K330E	0.25	tolerated(0.73)	benign(0.063)
TCGA-KN-8424-01	1	158056511	158056511	G	A	KIRREL	Silent	p.E212E	0.27		
TCGA-KN-8424-01	1	158746533	158746533	A	G	OR6N2	Missense_Mutation	p.I298T	0.30	deleterious(0)	benign(0.028)
TCGA-KN-8424-01	1	190068186	190068186	T	C	BRINP3	Silent	p.E421E	0.06		
TCGA-KN-8424-01	1	209952803	209952803	C	T	TRAF3IP3	Intron		0.32		
TCGA-KN-8424-01	1	86954776	86954776	A	T	CLCA1	Missense_Mutation	p.Q427L	0.27	deleterious(0.02)	possibly_damaging(0.614)
TCGA-KN-8424-01	21	19770214	19770214	G	T	TMPRSS15	Nonsense_Mutation	p.S109*	0.27		
TCGA-KN-8424-01	22	50187922	50187922	C	T	BRD1	Missense_Mutation	p.A707T	0.16	tolerated(0.26)	benign(0.026)
TCGA-KN-8424-01	2	119731958	119731958	G	A	MARCO	Silent	p.P170P	0.11		
TCGA-KN-8424-01	2	170060758	170060758	A	G	LRP2	Missense_Mutation	p.L2580P	0.30		benign(0.443)
TCGA-KN-8424-01	2	212578299	212578299	T	C	ERBB4	Missense_Mutation	p.I320V	0.66	tolerated(1)	benign(0.001)
TCGA-KN-8424-01	5	54329718	54329718	G	A	GZMK	Nonsense_Mutation	p.W253*	0.27		
TCGA-KN-8424-01	6	30672144	30672144	C	A	MDC1	Missense_Mutation	p.V1606F	0.62	deleterious(0.03)	possibly_damaging(0.736)
TCGA-KN-8424-01	6	44218791	44218791	T	G	HSP90AB1	Missense_Mutation	p.S322A	0.42	deleterious(0.02)	benign(0.002)
TCGA-KN-8424-01	7	143748124	143748124	G	A	OR2A5	Silent	p.P210P	0.04		
TCGA-KN-8424-01	7	156437191	156437191	A	G	RNF32	Splice_Site	p.X6_splice	0.41		
TCGA-KN-8424-01	7	21904162	21904165	AGAA	-	DNAH11	Frame_Shift_Del	p.K3804Rfs*2	0.12		
TCGA-KN-8424-01	7	47451335	47451335	C	G	TNS3	Missense_Mutation	p.G238A	0.22	deleterious(0)	probably_damaging(0.954)
TCGA-KN-8424-01	7	76828559	76828559	G	A	FGL2	Silent	p.V184V	0.50		
TCGA-KN-8424-01	8	144874055	144874055	C	T	SCRIB	Silent	p.P1562P	0.21		
TCGA-KN-8424-01	8	145617189	145617189	G	A	ADCK5	Missense_Mutation	p.G355S	0.19	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8424-01	X	106310626	106310626	A	T	RBM41	3'UTR		0.17		
TCGA-KN-8424-01	X	135570529	135570529	A	G	BRS3	Missense_Mutation	p.I86V	0.13	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8424-01	X	9905226	9905226	A	G	SHROOM2	Missense_Mutation	p.I1214V	0.15	deleterious(0)	possibly_damaging(0.785)
TCGA-KN-8425-01	11	101793446	101793446	G	A	KIAA1377	Missense_Mutation	p.R68Q	0.19	deleterious(0)	probably_damaging(1)
TCGA-KN-8425-01	12	117624289	117624289	C	A	FBXO21	Nonsense_Mutation	p.E155*	0.07		
TCGA-KN-8425-01	12	57522640	57522640	A	G	LRP1	5'UTR		0.05		
TCGA-KN-8425-01	15	49081131	49081131	T	C	CEP152	Missense_Mutation	p.H347R	0.04	tolerated(1)	benign(0.004)
TCGA-KN-8425-01	15	89383275	89383275	C	T	ACAN	Missense_Mutation	p.R163C	0.03	deleterious(0)	unknown(0)
TCGA-KN-8425-01	17	78866565	78866565	G	T	RPTOR	Missense_Mutation	p.C713F	0.59	tolerated(0.08)	benign(0.248)
TCGA-KN-8425-01	19	56243852	56243852	G	A	NLRP9	Nonsense_Mutation	p.Q449*	0.06		
TCGA-KN-8425-01	19	9058813	9058813	C	G	MUC16	Missense_Mutation	p.V9545L	0.07		unknown(0)
TCGA-KN-8425-01	20	19701832	19701832	C	T	SLC24A3	3'UTR		0.05		
TCGA-KN-8425-01	20	61522448	61522448	A	G	DIDO1	Silent	p.S1135S	0.05		
TCGA-KN-8425-01	20	62121830	62121830	A	C	EEF1A2	Splice_Site	p.X343_splice	0.20		
TCGA-KN-8425-01	3	51251628	51251628	G	A	DOCK3	Missense_Mutation	p.R401K	0.64	tolerated(0.25)	benign(0.009)
TCGA-KN-8425-01	4	86863259	86863259	G	T	ARHGAP24	Missense_Mutation	p.E144D	0.18	deleterious(0.03)	benign(0.167)
TCGA-KN-8425-01	4	87967367	87967367	C	T	AFF1	Missense_Mutation	p.R30C	0.14	deleterious(0)	probably_damaging(1)
TCGA-KN-8425-01	6	39040661	39040661	A	G	GLP1R	Missense_Mutation	p.Y178C	0.29	deleterious(0.01)	probably_damaging(0.997)
TCGA-KN-8425-01	6	41303610	41303610	A	G	NCR2	5'UTR		0.30		
TCGA-KN-8425-01	6	64419126	64419126	C	T	PHF3	Missense_Mutation	p.S1264L	0.15	deleterious(0)	probably_damaging(0.909)
TCGA-KN-8425-01	6	90605153	90605153	G	T	GJA10	Missense_Mutation	p.W322C	0.04	tolerated(0.12)	benign(0.03)
TCGA-KN-8425-01	8	12880103	12880103	A	C	KIAA1456	3'UTR		0.05		
TCGA-KN-8425-01	8	68152453	68152453	G	A	ARFGEF1	Missense_Mutation	p.L975F	0.56	deleterious(0.01)	probably_damaging(0.974)
TCGA-KN-8426-01	10	29759270	29759270	G	A	SVIL	Silent	p.H1926H	0.15		
TCGA-KN-8426-01	10	33218830	33218830	C	T	ITGB1	Missense_Mutation	p.S99N	0.76	tolerated(0.45)	benign(0.001)
TCGA-KN-8426-01	11	32636263	32636263	G	T	CCDC73	Missense_Mutation	p.P534Q	0.17	tolerated(0.51)	benign(0.087)
TCGA-KN-8426-01	11	72438103	72438103	G	A	ARAP1	Missense_Mutation	p.T24M	0.11	tolerated(0.23)	possibly_damaging(0.843)
TCGA-KN-8426-01	12	57348942	57348942	C	A	RDH16	Missense_Mutation	p.W107L	0.08	deleterious(0)	probably_damaging(0.992)
TCGA-KN-8426-01	12	72179679	72179679	T	G	RAB21	3'UTR		0.29		
TCGA-KN-8426-01	12	82747061	82747061	C	A	CCDC59	Nonsense_Mutation	p.E199*	0.05		
TCGA-KN-8426-01	12	8618083	8618083	G	A	CLEC6A	Nonsense_Mutation	p.W76*	0.46		
TCGA-KN-8426-01	13	25672488	25672488	G	A	PABPC3	3'UTR		0.15		
TCGA-KN-8426-01	14	21955874	21955874	G	T	TOX4	Intron		0.37		
TCGA-KN-8426-01	14	55515002	55515002	C	T	SOCS4	3'UTR		0.13		
TCGA-KN-8426-01	14	62462902	62462902	G	T	SYT16	Missense_Mutation	p.Q55H	0.07	deleterious_low_confidence(0)	possibly_damaging(0.873)
TCGA-KN-8426-01	14	92471894	92471894	A	C	TRIP11	Missense_Mutation	p.L809R	0.34	deleterious(0.02)	benign(0.033)
TCGA-KN-8426-01	16	21049160	21049160	C	A	DNAH3	Nonsense_Mutation	p.E1625*	0.37		
TCGA-KN-8426-01	16	88889069	88889069	T	C	GALNS	Missense_Mutation	p.N431S	0.41	tolerated(0.58)	benign(0.004)
TCGA-KN-8426-01	17	26677558	26677558	T	C	POLDIP2	Missense_Mutation	p.D272G	0.13	tolerated(1)	benign(0.001)
TCGA-KN-8426-01	17	40737279	40737279	A	G	FAM134C	Silent	p.L197L	0.20		
TCGA-KN-8426-01	17	42882018	42882018	C	A	GJC1	Missense_Mutation	p.G390W	0.28	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8426-01	19	22157111	22157111	G	C	ZNF208	Nonsense_Mutation	p.S242*	0.06		
TCGA-KN-8426-01	19	41003434	41003434	A	G	SPTBN4	Missense_Mutation	p.N236S	0.14	deleterious(0)	benign(0.001)
TCGA-KN-8426-01	19	42225041	42225041	C	G	CEACAM5	Silent	p.V657V	0.26		
TCGA-KN-8426-01	19	44500350	44500350	C	T	ZNF155	Missense_Mutation	p.S125F	0.09	tolerated(0.35)	benign(0.005)
TCGA-KN-8426-01	19	49055456	49055456	T	C	SULT2B1	5'UTR		0.08		
TCGA-KN-8426-01	19	54875936	54875936	C	T	LAIR1	Silent	p.V12V	0.22		
TCGA-KN-8426-01	19	8966765	8966765	C	T	MUC16	Silent	p.S14396S	0.22		
TCGA-KN-8426-01	1	154938971	154938971	C	A	SHC1	Missense_Mutation	p.A336S	0.19	tolerated(0.12)	benign(0.108)
TCGA-KN-8426-01	1	205632601	205632601	G	A	SLC45A3	Silent	p.A106A	0.77		
TCGA-KN-8426-01	1	67486077	67486077	G	A	SLC35D1	Missense_Mutation	p.T284I	0.81	deleterious(0)	probably_damaging(1)
TCGA-KN-8426-01	20	33303112	33303112	G	A	NCOA6	3'UTR		0.05		
TCGA-KN-8426-01	20	37555032	37555032	A	G	FAM83D	Missense_Mutation	p.K13E	0.27	tolerated_low_confidence(0.05)	benign(0.017)
TCGA-KN-8426-01	22	22556249	22556249	C	T	IGLV11-55	Silent	p.P21P	0.08		
TCGA-KN-8426-01	22	36697638	36697638	C	T	MYH9	Missense_Mutation	p.R858K	0.58		benign(0)
TCGA-KN-8426-01	22	41257713	41257713	C	A	DNAJB7	Missense_Mutation	p.V96F	0.20	deleterious(0.01)	possibly_damaging(0.741)
TCGA-KN-8426-01	3	151162874	151162874	G	T	IGSF10	Missense_Mutation	p.S1632Y	0.76	deleterious(0.01)	possibly_damaging(0.51)
TCGA-KN-8426-01	3	158363431	158363431	C	T	GFM1	Missense_Mutation	p.A32V	0.10	tolerated(0.21)	benign(0.001)
TCGA-KN-8426-01	4	167656152	167656152	C	T	SPOCK3	Missense_Mutation	p.D411N	0.03	tolerated_low_confidence(0.16)	unknown(0)
TCGA-KN-8426-01	4	169931136	169931136	G	T	CBR4	Missense_Mutation	p.N35K	0.06	tolerated(0.05)	benign(0.043)
TCGA-KN-8426-01	5	112384680	112384680	G	A	MCC	Intron		0.51		
TCGA-KN-8426-01	5	118324112	118324112	C	A	DTWD2	Missense_Mutation	p.R32L	0.36	tolerated_low_confidence(0.35)	benign(0.018)
TCGA-KN-8426-01	5	140242781	140242781	G	A	AC005609.1	Silent	p.S65S	0.14		
TCGA-KN-8426-01	5	140250883	140250883	C	T	PCDHA11	Missense_Mutation	p.A732V	0.49	tolerated_low_confidence(0.06)	benign(0.004)
TCGA-KN-8426-01	5	149773014	149773014	C	G	TCOF1	Missense_Mutation	p.S1227C	0.40	tolerated(0.09)	probably_damaging(0.919)
TCGA-KN-8426-01	5	32074723	32074723	T	C	PDZD2	Missense_Mutation	p.F1171L	0.05	tolerated(1)	benign(0.001)
TCGA-KN-8426-01	5	64468715	64468715	G	A	ADAMTS6	Missense_Mutation	p.R1011C	0.41	deleterious(0.02)	probably_damaging(0.985)
TCGA-KN-8426-01	5	76326664	76326664	C	T	AGGF1	Silent	p.L25L	0.57		
TCGA-KN-8426-01	6	89793802	89793802	A	G	PNRC1	Missense_Mutation	p.S291G	0.72	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8426-01	7	100677675	100677675	C	T	MUC17	Missense_Mutation	p.T993M	0.06		probably_damaging(0.993)
TCGA-KN-8426-01	7	89748935	89748935	C	T	RP5-1121E10.2	Intron		0.16		
TCGA-KN-8426-01	X	109696984	109696984	G	T	RGAG1	Missense_Mutation	p.A1047S	0.75	deleterious(0.04)	benign(0.076)
TCGA-KN-8426-01	X	153588714	153588714	A	T	FLNA	Missense_Mutation	p.F1150Y	0.82	tolerated(0.11)	probably_damaging(0.999)
TCGA-KN-8427-01	10	115609249	115609249	G	A	DCLRE1A	Missense_Mutation	p.P539S	0.05	tolerated(0.21)	benign(0.01)
TCGA-KN-8427-01	10	14951197	14951197	C	G	DCLRE1C	Missense_Mutation	p.R430T	0.38	tolerated_low_confidence(0.45)	benign(0.002)
TCGA-KN-8427-01	10	30318485	30318485	G	A	KIAA1462	Nonsense_Mutation	p.Q198*	0.19		
TCGA-KN-8427-01	10	5010505	5010505	G	A	AKR1C1	Missense_Mutation	p.G125D	0.21	deleterious(0.01)	benign(0.316)
TCGA-KN-8427-01	10	63957976	63957976	A	C	RTKN2	Silent	p.P507P	0.08		
TCGA-KN-8427-01	10	70702984	70702984	G	C	DDX50	Missense_Mutation	p.V636L	0.36	tolerated(0.21)	benign(0.277)
TCGA-KN-8427-01	10	96698418	96698418	T	G	CYP2C9	5'Flank		0.15		
TCGA-KN-8427-01	10	96748762	96748762	C	T	CYP2C9	Nonsense_Mutation	p.Q484*	0.07		
TCGA-KN-8427-01	11	102737125	102737125	A	C	MMP12	RNA		0.23		
TCGA-KN-8427-01	11	105776029	105776029	T	G	GRIA4	Splice_Site	p.X386_splice	0.21		
TCGA-KN-8427-01	11	132081945	132081945	G	T	NTM	Missense_Mutation	p.D144Y	0.13	deleterious(0)	probably_damaging(0.978)
TCGA-KN-8427-01	11	1466625	1466625	G	A	BRSK2	Missense_Mutation	p.S351N	0.11	tolerated(0.26)	probably_damaging(0.996)
TCGA-KN-8427-01	11	60198312	60198312	T	G	MS4A5	Missense_Mutation	p.V66G	0.23	deleterious(0)	benign(0.049)
TCGA-KN-8427-01	11	65811123	65811123	A	C	GAL3ST3	Missense_Mutation	p.C51G	0.09	tolerated(0.09)	possibly_damaging(0.474)
TCGA-KN-8427-01	11	65811124	65811124	G	T	GAL3ST3	Missense_Mutation	p.S50R	0.09	tolerated(0.39)	benign(0.005)
TCGA-KN-8427-01	12	53670499	53670499	C	G	ESPL1	Missense_Mutation	p.T599S	0.13	deleterious(0.05)	probably_damaging(0.999)
TCGA-KN-8427-01	13	21557476	21557476	C	T	LATS2	Missense_Mutation	p.R790Q	0.57	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8427-01	15	86808034	86808034	C	A	AGBL1	Silent	p.T498T	0.53		
TCGA-KN-8427-01	16	53737974	53737974	T	C	FTO	5'UTR		0.37		
TCGA-KN-8427-01	16	66600040	66600040	G	-	CKLF	3'Flank		0.36		
TCGA-KN-8427-01	17	46000417	46000417	C	G	SP2	Silent	p.T383T	0.45		
TCGA-KN-8427-01	17	48154412	48154412	C	G	ITGA3	Missense_Mutation	p.S666C	0.21	tolerated(0.06)	benign(0.041)
TCGA-KN-8427-01	17	48267232	48267232	G	C	COL1A1	Missense_Mutation	p.S867R	0.44		unknown(0)
TCGA-KN-8427-01	17	67092895	67092895	A	C	ABCA6	Silent	p.A1056A	0.19		
TCGA-KN-8427-01	17	72348987	72348987	G	A	KIF19	Missense_Mutation	p.A670T	0.28	tolerated(0.29)	benign(0.003)
TCGA-KN-8427-01	17	79080558	79080558	A	G	BAIAP2	Missense_Mutation	p.K451E	0.04	tolerated(0.07)	benign(0.019)
TCGA-KN-8427-01	18	29122688	29122688	C	T	DSG2	Missense_Mutation	p.T736I	0.36	tolerated(0.27)	benign(0.011)
TCGA-KN-8427-01	19	12433413	12433423	TTCCTGATGGT	-	ZNF563	Frame_Shift_Del	p.T36Pfs*14	0.15		
TCGA-KN-8427-01	19	12911998	12911998	T	C	PRDX2	Silent	p.K26K	0.21		
TCGA-KN-8427-01	19	16025181	16025181	C	T	CYP4F11	Missense_Mutation	p.R444H	0.24	deleterious(0)	possibly_damaging(0.874)
TCGA-KN-8427-01	19	17756839	17756839	T	G	UNC13A	Missense_Mutation	p.K709T	0.11	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8427-01	19	33113433	33113433	G	T	ANKRD27	Silent	p.R574R	0.10		
TCGA-KN-8427-01	19	50411414	50411414	C	T	NUP62	3'UTR		0.15		
TCGA-KN-8427-01	19	56952705	56952705	T	C	ZNF667	Silent	p.K553K	0.20		
TCGA-KN-8427-01	1	114680520	114680520	T	G	SYT6	Missense_Mutation	p.K138T	0.12	tolerated(0.25)	benign(0.004)
TCGA-KN-8427-01	1	115256530	115256530	G	T	NRAS	Missense_Mutation	p.Q61K	0.56	deleterious(0.01)	benign(0.045)
TCGA-KN-8427-01	1	152382811	152382811	C	A	CRNN	Missense_Mutation	p.Q249H	0.09	tolerated(0.07)	benign(0.132)
TCGA-KN-8427-01	1	158596633	158596633	C	T	SPTA1	Nonsense_Mutation	p.W1943*	0.35		
TCGA-KN-8427-01	1	160275563	160275563	C	G	COPA	Silent	p.R481R	0.13		
TCGA-KN-8427-01	1	16256119	16256119	C	T	SPEN	Silent	p.D1128D	0.16		
TCGA-KN-8427-01	1	168066296	168066296	G	T	GPR161	Missense_Mutation	p.H203Q	0.55	deleterious(0.03)	possibly_damaging(0.721)
TCGA-KN-8427-01	1	171072967	171072967	C	T	FMO3	Silent	p.V58V	0.21		
TCGA-KN-8427-01	1	176709219	176709219	A	C	PAPPA2	Silent	p.S1346S	0.18		
TCGA-KN-8427-01	1	197026583	197026583	C	T	F13B	Missense_Mutation	p.R273K	0.45	tolerated(1)	benign(0.124)
TCGA-KN-8427-01	1	201934576	201934576	T	C	TIMM17A	Missense_Mutation	p.M112T	0.49	tolerated(0.09)	probably_damaging(0.968)
TCGA-KN-8427-01	1	228433197	228433197	G	C	OBSCN	Missense_Mutation	p.E1281Q	0.18		possibly_damaging(0.896)
TCGA-KN-8427-01	1	34209065	34209065	A	G	CSMD2	Silent	p.I623I	0.18		
TCGA-KN-8427-01	20	3172425	3172425	C	A	DDRGK1	Missense_Mutation	p.G239C	0.34	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8427-01	20	61525220	61525220	C	A	DIDO1	Missense_Mutation	p.D967Y	0.08		probably_damaging(0.999)
TCGA-KN-8427-01	21	45553542	45553542	T	C	C21orf33	5'UTR		0.12		
TCGA-KN-8427-01	22	43565506	43565506	C	T	TTLL12	Silent	p.Q548Q	0.16		
TCGA-KN-8427-01	2	10924525	10924525	G	A	ATP6V1C2	3'Flank		0.45		
TCGA-KN-8427-01	2	143713785	143713785	A	G	KYNU	Missense_Mutation	p.K150R	0.18	tolerated(0.51)	benign(0.007)
TCGA-KN-8427-01	2	149247532	149247532	A	C	MBD5	Missense_Mutation	p.K1211T	0.16	tolerated_low_confidence(0.13)	unknown(0)
TCGA-KN-8427-01	2	172953040	172953040	G	A	DLX1	3'UTR		0.29		
TCGA-KN-8427-01	2	179437087	179437087	A	G	TTN	Missense_Mutation	p.F24591S	0.15		
TCGA-KN-8427-01	2	179644742	179644742	A	C	TTN	Silent	p.T1238T	0.08		
TCGA-KN-8427-01	2	20189771	20189771	G	A	WDR35	Silent	p.F2F	0.33		
TCGA-KN-8427-01	2	202902451	202902451	T	G	FZD7	3'UTR		0.47		
TCGA-KN-8427-01	2	235404686	235404686	C	T	ARL4C	Missense_Mutation	p.R182H	0.20	tolerated(0.06)	unknown(0)
TCGA-KN-8427-01	3	151012813	151012813	G	A	GPR87	Missense_Mutation	p.T74I	0.06	deleterious(0.02)	probably_damaging(0.979)
TCGA-KN-8427-01	3	180319946	180319946	C	T	TTC14	5'UTR		0.25		
TCGA-KN-8427-01	3	47462126	47462126	G	A	SCAP	Missense_Mutation	p.S494F	0.06	tolerated(0.08)	possibly_damaging(0.635)
TCGA-KN-8427-01	3	7620544	7620544	G	C	GRM7	Missense_Mutation	p.D651H	0.12	deleterious(0.03)	possibly_damaging(0.832)
TCGA-KN-8427-01	4	109084842	109084842	C	G	LEF1	Missense_Mutation	p.G99A	0.11	tolerated(0.09)	possibly_damaging(0.547)
TCGA-KN-8427-01	4	15964500	15964500	C	T	FGFBP2	Missense_Mutation	p.A85T	0.36	tolerated(0.74)	benign(0.001)
TCGA-KN-8427-01	4	164061464	164061464	C	A	NAF1	Missense_Mutation	p.E263D	0.06	deleterious(0.04)	benign(0.356)
TCGA-KN-8427-01	4	164466780	164466780	G	C	MARCH1	Missense_Mutation	p.T180R	0.55	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8427-01	5	115840607	115840607	G	C	SEMA6A	Missense_Mutation	p.L12V	0.21	tolerated(0.13)	benign(0.303)
TCGA-KN-8427-01	5	175306003	175306003	C	T	CPLX2	Missense_Mutation	p.R42W	0.18	deleterious(0)	probably_damaging(0.949)
TCGA-KN-8427-01	5	94046552	94046552	A	C	MCTP1	Missense_Mutation	p.I934S	0.25	deleterious(0)	probably_damaging(0.974)
TCGA-KN-8427-01	6	105526614	105526614	C	T	LIN28B	Nonsense_Mutation	p.Q237*	0.07		
TCGA-KN-8427-01	6	117248566	117248566	G	T	RFX6	Silent	p.P754P	0.56		
TCGA-KN-8427-01	6	26158611	26158611	G	C	HIST1H2BD	Missense_Mutation	p.E72Q	0.04	deleterious_low_confidence(0.02)	benign(0.02)
TCGA-KN-8427-01	6	32007325	32007325	C	G	CYP21A2	Missense_Mutation	p.D184E	0.39	tolerated(1)	benign(0.007)
TCGA-KN-8427-01	7	117876137	117876137	C	T	ANKRD7	Missense_Mutation	p.P171S	0.39	tolerated(0.37)	benign(0.248)
TCGA-KN-8427-01	7	26240229	26240229	G	A	HNRNPA2B1	5'UTR		0.15		
TCGA-KN-8427-01	7	72040697	72040697	A	G	TYW1B	Missense_Mutation	p.I224T	0.18	tolerated(0.06)	benign(0.097)
TCGA-KN-8427-01	7	76021323	76021323	C	G	SRCRB4D	Missense_Mutation	p.G457R	0.35	tolerated(0.69)	benign(0.14)
TCGA-KN-8427-01	7	83590705	83590705	C	T	SEMA3A	Silent	p.R766R	0.37		
TCGA-KN-8427-01	8	104427572	104427572	T	A	DCAF13	Silent	p.T118T	0.08		
TCGA-KN-8427-01	8	110530424	110530424	T	C	PKHD1L1	Silent	p.T3906T	0.15		
TCGA-KN-8427-01	8	113988244	113988244	A	G	CSMD3	Silent	p.H388H	0.09		
TCGA-KN-8427-01	8	118552344	118552344	T	A	MED30	3'UTR		0.74		
TCGA-KN-8427-01	8	143958438	143958438	C	T	CYP11B1	Splice_Site	p.X199_splice	0.29		
TCGA-KN-8427-01	8	22865476	22865476	C	G	RHOBTB2	Intron		0.46		
TCGA-KN-8427-01	9	124936966	124936966	C	A	MORN5	Intron		0.44		
TCGA-KN-8427-01	9	27556771	27556771	C	T	C9orf72	Silent	p.L293L	0.28		
TCGA-KN-8427-01	9	94487339	94487339	C	G	ROR2	Silent	p.L479L	0.12		
TCGA-KN-8427-01	9	97694126	97694126	T	C	C9orf3	Intron		0.07		
TCGA-KN-8427-01	X	128886303	128886303	C	T	XPNPEP2	Silent	p.I333I	0.52		
TCGA-KN-8427-01	X	136112626	136112626	A	G	GPR101	Missense_Mutation	p.I403T	0.23	deleterious(0.01)	benign(0.113)
TCGA-KN-8427-01	X	155011632	155011632	G	A	SPRY3	3'UTR		0.17		
TCGA-KN-8428-01	10	100177455	100177455	G	A	HPS1	Missense_Mutation	p.R657C	0.06	deleterious(0.01)	possibly_damaging(0.828)
TCGA-KN-8428-01	10	101483798	101483798	C	T	COX15	Missense_Mutation	p.R222H	0.71	deleterious(0)	probably_damaging(0.995)
TCGA-KN-8428-01	10	101716912	101716912	G	A	DNMBP	Nonsense_Mutation	p.R107*	0.38		
TCGA-KN-8428-01	10	102738018	102738018	C	T	MRPL43	3'Flank		0.57		
TCGA-KN-8428-01	10	102743469	102743469	T	C	SEMA4G	Missense_Mutation	p.C705R	0.62	deleterious(0)	possibly_damaging(0.812)
TCGA-KN-8428-01	10	105215188	105215188	C	T	CALHM1	Missense_Mutation	p.R291H	0.57	tolerated(0.7)	benign(0.007)
TCGA-KN-8428-01	10	1175232	1175232	G	A	WDR37	Missense_Mutation	p.R478Q	0.10	deleterious(0)	benign(0.09)
TCGA-KN-8428-01	10	120896709	120896709	G	A	SFXN4	3'Flank		0.37		
TCGA-KN-8428-01	10	120900714	120900714	T	C	SFXN4	3'UTR		0.08		
TCGA-KN-8428-01	10	124057337	124057337	C	T	BTBD16	Silent	p.Y215Y	0.57		
TCGA-KN-8428-01	10	124172505	124172505	C	T	PLEKHA1	Nonsense_Mutation	p.Q138*	0.62		
TCGA-KN-8428-01	10	129216676	129216676	G	A	DOCK1	Silent	p.T1500T	0.70		
TCGA-KN-8428-01	10	129901498	129901498	G	A	MKI67	Missense_Mutation	p.T2869M	0.72	tolerated(0.32)	benign(0.041)
TCGA-KN-8428-01	10	134996849	134996849	C	T	KNDC1	Missense_Mutation	p.A121V	0.55	deleterious(0)	benign(0.057)
TCGA-KN-8428-01	10	16858984	16858984	C	T	RSU1	Missense_Mutation	p.V33I	0.07	tolerated(0.95)	benign(0.001)
TCGA-KN-8428-01	10	35464631	35464631	A	G	CREM	Intron		0.05		
TCGA-KN-8428-01	10	44053529	44053529	C	T	ZNF239	5'UTR		0.61		
TCGA-KN-8428-01	10	45485141	45485141	C	T	RASSF4	Silent	p.F219F	0.59		
TCGA-KN-8428-01	10	5567525	5567525	G	A	CALML3	3'UTR		0.39		
TCGA-KN-8428-01	10	5827121	5827121	G	A	GDI2	Missense_Mutation	p.P235S	0.77	deleterious(0.01)	possibly_damaging(0.901)
TCGA-KN-8428-01	10	6063568	6063568	G	A	IL2RA	Silent	p.C152C	0.76		
TCGA-KN-8428-01	10	70695777	70695777	C	T	DDX50	Missense_Mutation	p.R513C	0.60	deleterious(0.02)	benign(0.049)
TCGA-KN-8428-01	10	72324139	72324139	C	T	PALD1	Missense_Mutation	p.A761V	0.64	deleterious(0.02)	benign(0.25)
TCGA-KN-8428-01	10	82269147	82269147	C	T	TSPAN14	Missense_Mutation	p.R124W	0.66	deleterious(0.01)	possibly_damaging(0.771)
TCGA-KN-8428-01	10	91371798	91371798	T	C	PANK1	Silent	p.P237P	0.80		
TCGA-KN-8428-01	10	95168570	95168570	T	G	MYOF	Silent	p.R235R	0.62		
TCGA-KN-8428-01	10	98760850	98760850	G	A	SLIT1	3'UTR		0.82		
TCGA-KN-8428-01	11	102738681	102738681	G	A	MMP12	RNA		0.17		
TCGA-KN-8428-01	11	102987417	102987417	G	A	DYNC2H1	Missense_Mutation	p.R247Q	0.52		probably_damaging(0.969)
TCGA-KN-8428-01	11	108201014	108201014	C	T	ATM	Missense_Mutation	p.R2461C	0.58	deleterious(0)	possibly_damaging(0.788)
TCGA-KN-8428-01	11	111938616	111938616	G	A	PIH1D2	Silent	p.I309I	0.20		
TCGA-KN-8428-01	11	113187003	113187003	T	A	TTC12	Missense_Mutation	p.D8E	0.47	tolerated(0.12)	possibly_damaging(0.668)
TCGA-KN-8428-01	11	11400665	11400665	C	T	GALNT18	Missense_Mutation	p.A248T	0.31	deleterious(0.01)	probably_damaging(0.999)
TCGA-KN-8428-01	11	117262985	117262985	G	A	CEP164	Missense_Mutation	p.R776Q	0.13	tolerated(0.91)	benign(0.049)
TCGA-KN-8428-01	11	119212383	119212383	G	A	MFRP	Missense_Mutation	p.R539C	0.22	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8428-01	11	126135007	126135007	G	A	SRPR	Missense_Mutation	p.R458C	0.22	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	11	128709264	128709264	C	T	KCNJ1	Missense_Mutation	p.R311Q	0.23	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8428-01	11	128781258	128781258	C	T	KCNJ5	Silent	p.R30R	0.28		
TCGA-KN-8428-01	11	133800913	133800913	C	T	IGSF9B	Silent	p.T495T	0.16		
TCGA-KN-8428-01	11	134009776	134009776	C	A	JAM3	Missense_Mutation	p.S36Y	0.06	deleterious(0)	probably_damaging(0.992)
TCGA-KN-8428-01	11	134009777	134009777	C	A	JAM3	Silent	p.S36S	0.06		
TCGA-KN-8428-01	11	1482124	1482124	G	A	BRSK2	3'UTR		0.38		
TCGA-KN-8428-01	11	17793281	17793281	C	T	KCNC1	Missense_Mutation	p.R214C	0.64	deleterious(0.01)	possibly_damaging(0.62)
TCGA-KN-8428-01	11	18636542	18636542	G	A	SPTY2D1	Missense_Mutation	p.R427W	0.16	deleterious(0.02)	possibly_damaging(0.527)
TCGA-KN-8428-01	11	19170818	19170818	C	A	ZDHHC13	Silent	p.I153I	0.23		
TCGA-KN-8428-01	11	27681033	27681033	A	G	BDNF	Intron		0.04		
TCGA-KN-8428-01	11	28110079	28110079	C	G	KIF18A	Missense_Mutation	p.D297H	0.17	deleterious(0)	probably_damaging(0.968)
TCGA-KN-8428-01	11	33770354	33770354	G	A	FBXO3	Silent	p.D339D	0.28		
TCGA-KN-8428-01	11	34192538	34192538	C	T	ABTB2	Missense_Mutation	p.R493H	0.24	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	11	428582	428582	C	T	ANO9	Missense_Mutation	p.A360T	0.35	deleterious(0.04)	probably_damaging(0.987)
TCGA-KN-8428-01	11	4624492	4624492	G	A	TRIM68	Nonsense_Mutation	p.R169*	0.10		
TCGA-KN-8428-01	11	46911059	46911059	G	A	LRP4	Silent	p.N706N	0.60		
TCGA-KN-8428-01	11	60899839	60899839	C	T	VPS37C	Missense_Mutation	p.R174H	0.35	tolerated(0.16)	benign(0.006)
TCGA-KN-8428-01	11	61081572	61081572	C	T	DDB1	Missense_Mutation	p.R567H	0.26	tolerated(0.22)	benign(0.085)
TCGA-KN-8428-01	11	61906227	61906227	G	A	INCENP	Silent	p.A386A	0.33		
TCGA-KN-8428-01	11	62286931	62286931	G	A	AHNAK	Silent	p.S4986S	0.52		
TCGA-KN-8428-01	11	62601996	62601996	G	A	WDR74	Missense_Mutation	p.R208C	0.34	deleterious(0)	probably_damaging(0.981)
TCGA-KN-8428-01	11	64665396	64665396	C	T	ATG2A	Missense_Mutation	p.E1637K	0.54	tolerated(0.48)	benign(0.001)
TCGA-KN-8428-01	11	65363245	65363245	G	A	KCNK7	5'UTR		0.29		
TCGA-KN-8428-01	11	6555328	6555328	G	A	DNHD1	Missense_Mutation	p.V975I	0.67		benign(0)
TCGA-KN-8428-01	11	65721060	65721060	C	T	TSGA10IP	RNA		0.70		
TCGA-KN-8428-01	11	65744159	65744159	C	T	SART1	Silent	p.N593N	0.18		
TCGA-KN-8428-01	11	65978707	65978707	G	A	PACS1	Missense_Mutation	p.V213M	0.27	tolerated(0.05)	benign(0.185)
TCGA-KN-8428-01	11	66039636	66039636	G	A	RAB1B	Silent	p.T32T	0.07		
TCGA-KN-8428-01	11	66101541	66101541	G	A	RIN1	Silent	p.F480F	0.19		
TCGA-KN-8428-01	11	6632970	6632970	G	A	TAF10	Silent	p.N104N	0.23		
TCGA-KN-8428-01	11	6638918	6638918	C	T	TPP1	Missense_Mutation	p.G107R	0.08	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	11	6650025	6650025	G	A	DCHS1	Missense_Mutation	p.T1733M	0.29	deleterious(0)	possibly_damaging(0.623)
TCGA-KN-8428-01	11	67261522	67261522	G	A	PITPNM1	Missense_Mutation	p.T960M	0.25	tolerated(0.07)	possibly_damaging(0.715)
TCGA-KN-8428-01	11	67925896	67925896	G	A	SUV420H1	Silent	p.D639D	0.48		
TCGA-KN-8428-01	11	68530138	68530138	T	C	CPT1A	Missense_Mutation	p.E611G	0.13	deleterious(0)	possibly_damaging(0.586)
TCGA-KN-8428-01	11	72404807	72404807	G	A	ARAP1	Silent	p.H1246H	0.57		
TCGA-KN-8428-01	11	73689005	73689005	C	T	UCP2	Missense_Mutation	p.R88H	0.23	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	11	73988139	73988139	C	T	P4HA3	Missense_Mutation	p.R409H	0.05	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8428-01	11	74988453	74988453	C	T	ARRB1	Missense_Mutation	p.V220I	0.53	tolerated(0.99)	benign(0.041)
TCGA-KN-8428-01	11	75188817	75188817	G	A	GDPD5	5'UTR		0.32		
TCGA-KN-8428-01	11	76506753	76506753	C	T	TSKU	Silent	p.F31F	0.64		
TCGA-KN-8428-01	11	77917084	77917084	A	G	USP35	Intron		0.09		
TCGA-KN-8428-01	11	7982431	7982431	C	T	NLRP10	Missense_Mutation	p.R243Q	0.17	deleterious(0.04)	probably_damaging(0.915)
TCGA-KN-8428-01	11	89935620	89935620	G	T	CHORDC1	Missense_Mutation	p.P318T	0.55	deleterious(0)	benign(0.259)
TCGA-KN-8428-01	11	92086239	92086239	T	C	FAT3	Silent	p.L321L	0.30		
TCGA-KN-8428-01	11	92577151	92577151	C	T	FAT3	Nonsense_Mutation	p.R3540*	0.44		
TCGA-KN-8428-01	11	94353042	94353042	G	A	PIWIL4	Missense_Mutation	p.R762H	0.55	deleterious(0.01)	possibly_damaging(0.745)
TCGA-KN-8428-01	11	95555759	95555759	G	A	CEP57	Intron		0.16		
TCGA-KN-8428-01	11	9802030	9802030	C	T	SBF2	Missense_Mutation	p.A1829T	0.23	deleterious(0)	probably_damaging(0.946)
TCGA-KN-8428-01	12	102164267	102164267	G	A	GNPTAB	Missense_Mutation	p.R344W	0.35	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	12	109316565	109316565	G	A	SVOP	Missense_Mutation	p.R288W	0.21	deleterious(0.02)	benign(0.365)
TCGA-KN-8428-01	12	109882246	109882246	G	A	MYO1H	Missense_Mutation	p.V953I	0.34	tolerated(1)	benign(0.003)
TCGA-KN-8428-01	12	113346548	113346548	C	T	OAS1	Missense_Mutation	p.R130C	0.36	deleterious(0.01)	possibly_damaging(0.503)
TCGA-KN-8428-01	12	113554915	113554915	G	A	RASAL1	Missense_Mutation	p.R232C	0.19	deleterious(0)	probably_damaging(0.969)
TCGA-KN-8428-01	12	113825669	113825669	C	A	PLBD2	Missense_Mutation	p.F520L	0.44	tolerated(0.1)	possibly_damaging(0.609)
TCGA-KN-8428-01	12	119968788	119968788	C	T	CCDC60	Nonsense_Mutation	p.R491*	0.06		
TCGA-KN-8428-01	12	120150093	120150093	T	C	CIT	Missense_Mutation	p.T1582A	0.28	tolerated(0.09)	benign(0.004)
TCGA-KN-8428-01	12	121000814	121000814	C	A	RNF10	Missense_Mutation	p.L399M	0.33	tolerated(0.32)	benign(0.04)
TCGA-KN-8428-01	12	125263104	125263104	C	T	SCARB1	3'UTR		0.14		
TCGA-KN-8428-01	12	12618601	12618601	T	C	LOH12CR1	Missense_Mutation	p.M161T	0.19	tolerated(0.32)	benign(0.288)
TCGA-KN-8428-01	12	132474512	132474512	G	A	EP400	Missense_Mutation	p.V805I	0.11		unknown(0)
TCGA-KN-8428-01	12	133250211	133250211	C	T	POLE	Missense_Mutation	p.V437M	0.52	tolerated(0.07)	probably_damaging(0.92)
TCGA-KN-8428-01	12	14976228	14976228	C	T	C12orf60	Missense_Mutation	p.T120M	0.13	tolerated(0.12)	possibly_damaging(0.596)
TCGA-KN-8428-01	12	26581017	26581017	T	C	ITPR2	Silent	p.T2258T	0.25		
TCGA-KN-8428-01	12	27933686	27933686	G	A	KLHL42	Silent	p.G141G	0.28		
TCGA-KN-8428-01	12	48185382	48185382	G	A	HDAC7	Silent	p.N640N	0.20		
TCGA-KN-8428-01	12	48272845	48272845	G	A	VDR	Missense_Mutation	p.R68W	0.57	deleterious(0)	probably_damaging(0.944)
TCGA-KN-8428-01	12	49251932	49251932	C	T	RND1	Silent	p.T182T	0.30		
TCGA-KN-8428-01	12	49396782	49396782	C	T	PRKAG1	Missense_Mutation	p.R308Q	0.33	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	12	50025707	50025707	C	T	PRPF40B	Missense_Mutation	p.A98V	0.17	tolerated(0.2)	unknown(0)
TCGA-KN-8428-01	12	50185655	50185655	G	A	NCKAP5L	Silent	p.Y1324Y	0.06		
TCGA-KN-8428-01	12	5020791	5020791	G	T	KCNA1	Missense_Mutation	p.D83Y	0.15	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8428-01	12	50359052	50359052	G	A	AQP5	3'UTR		0.27		
TCGA-KN-8428-01	12	51252617	51252617	C	T	TMPRSS12	Missense_Mutation	p.R145C	0.55	tolerated(0.17)	benign(0.195)
TCGA-KN-8428-01	12	51752021	51752021	G	A	GALNT6	Nonsense_Mutation	p.R465*	0.33		
TCGA-KN-8428-01	12	52449897	52449897	G	A	NR4A1	Silent	p.Q333Q	0.36		
TCGA-KN-8428-01	12	52681804	52681804	G	A	KRT81	Silent	p.R288R	0.14		
TCGA-KN-8428-01	12	52867039	52867039	G	A	KRT6C	Silent	p.A161A	0.47		
TCGA-KN-8428-01	12	52910639	52910639	G	A	KRT5	Silent	p.C407C	0.30		
TCGA-KN-8428-01	12	53045674	53045674	C	T	KRT2	Missense_Mutation	p.A85T	0.16	tolerated(0.36)	unknown(0)
TCGA-KN-8428-01	12	53647353	53647353	C	T	MFSD5	Missense_Mutation	p.S352L	0.25	deleterious(0.01)	possibly_damaging(0.756)
TCGA-KN-8428-01	12	53663207	53663207	C	T	ESPL1	Missense_Mutation	p.R161W	0.21	deleterious(0.02)	possibly_damaging(0.586)
TCGA-KN-8428-01	12	53685530	53685530	C	T	ESPL1	Silent	p.Y1859Y	0.19		
TCGA-KN-8428-01	12	53895879	53895879	C	T	TARBP2	Missense_Mutation	p.T45M	0.19	tolerated(0.18)	probably_damaging(0.999)
TCGA-KN-8428-01	12	54333126	54333126	G	A	HOXC13	Missense_Mutation	p.A146T	0.18	tolerated(0.34)	benign(0.426)
TCGA-KN-8428-01	12	56090778	56090778	G	A	ITGA7	Missense_Mutation	p.R552C	0.17	deleterious(0)	probably_damaging(0.919)
TCGA-KN-8428-01	12	56142583	56142583	G	A	GDF11	Missense_Mutation	p.R220H	0.52	deleterious(0.03)	benign(0.038)
TCGA-KN-8428-01	12	56478809	56478809	G	A	ERBB3	Missense_Mutation	p.V89M	0.28	deleterious(0)	possibly_damaging(0.778)
TCGA-KN-8428-01	12	56648376	56648376	G	A	ANKRD52	Missense_Mutation	p.R227W	0.26	deleterious(0.01)	probably_damaging(0.961)
TCGA-KN-8428-01	12	57114975	57114975	T	C	NACA	Silent	p.P113P	0.30		
TCGA-KN-8428-01	12	57693939	57693939	C	T	R3HDM2	Missense_Mutation	p.R78H	0.34	deleterious(0.02)	benign(0.041)
TCGA-KN-8428-01	12	58160795	58160795	T	G	CYP27B1	Missense_Mutation	p.R10S	0.10	deleterious_low_confidence(0)	benign(0.424)
TCGA-KN-8428-01	12	6078503	6078503	G	A	VWF	Nonsense_Mutation	p.R2535*	0.48		
TCGA-KN-8428-01	12	6435610	6435610	T	C	PLEKHG6	Missense_Mutation	p.L514P	0.07	deleterious(0)	probably_damaging(0.969)
TCGA-KN-8428-01	12	6471284	6471284	G	T	SCNN1A	Missense_Mutation	p.L329M	0.36	tolerated(0.23)	possibly_damaging(0.847)
TCGA-KN-8428-01	12	6657689	6657689	C	T	IFFO1	Missense_Mutation	p.D421N	0.05	tolerated(0.06)	probably_damaging(0.989)
TCGA-KN-8428-01	12	68052183	68052183	C	T	DYRK2	Missense_Mutation	p.A499V	0.33	tolerated(0.37)	possibly_damaging(0.831)
TCGA-KN-8428-01	12	69656278	69656278	G	A	CPSF6	Missense_Mutation	p.R532Q	0.27	tolerated_low_confidence(0.09)	unknown(0)
TCGA-KN-8428-01	12	7088722	7088722	G	A	LPCAT3	Missense_Mutation	p.R233C	0.23	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	12	7188165	7188165	C	T	C1R	Missense_Mutation	p.G545R	0.17	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	12	76780412	76780412	G	A	OSBPL8	Missense_Mutation	p.R461C	0.55	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	12	77222268	77222268	A	G	ZDHHC17	Missense_Mutation	p.N380S	0.23	tolerated(0.13)	benign(0.025)
TCGA-KN-8428-01	12	7942175	7942175	C	A	NANOG	5'UTR		0.15		
TCGA-KN-8428-01	12	8083895	8083895	A	T	SLC2A3	Silent	p.G152G	0.17		
TCGA-KN-8428-01	12	8205480	8205480	G	A	FOXJ2	3'UTR		0.14		
TCGA-KN-8428-01	12	8757413	8757413	C	T	AICDA	Missense_Mutation	p.R178H	0.32	tolerated(0.09)	probably_damaging(0.988)
TCGA-KN-8428-01	12	8902463	8902463	C	T	RIMKLB	Missense_Mutation	p.R61W	0.19	deleterious(0.02)	possibly_damaging(0.836)
TCGA-KN-8428-01	12	89992451	89992451	C	T	ATP2B1	Intron		0.48		
TCGA-KN-8428-01	12	95694384	95694384	A	G	VEZT	Missense_Mutation	p.T759A	0.23	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8428-01	13	113530121	113530121	G	A	ATP11A	Missense_Mutation	p.V1065M	0.27	deleterious(0)	probably_damaging(0.941)
TCGA-KN-8428-01	13	114780772	114780772	C	T	RASA3	Missense_Mutation	p.A440T	0.33	tolerated(0.29)	benign(0.354)
TCGA-KN-8428-01	13	20220830	20220830	C	T	MPHOSPH8	Missense_Mutation	p.A206V	0.08	tolerated_low_confidence(0.17)	benign(0.008)
TCGA-KN-8428-01	13	30088682	30088682	C	T	SLC7A1	Missense_Mutation	p.E609K	0.18	tolerated(0.8)	benign(0.047)
TCGA-KN-8428-01	13	35733452	35733452	A	G	NBEA	Silent	p.V1048V	0.38		
TCGA-KN-8428-01	13	36909383	36909383	T	C	SPG20	Silent	p.S195S	0.09		
TCGA-KN-8428-01	13	41657033	41657033	C	T	WBP4	Nonsense_Mutation	p.R372*	0.73		
TCGA-KN-8428-01	13	46287927	46287927	C	T	SPERT	Missense_Mutation	p.A256V	0.92	tolerated(0.49)	possibly_damaging(0.512)
TCGA-KN-8428-01	13	49033915	49033915	C	-	RB1	Frame_Shift_Del	p.Q685Sfs*11	0.44		
TCGA-KN-8428-01	13	73348179	73348179	C	T	DIS3	Missense_Mutation	p.E336K	0.48	tolerated(0.41)	benign(0.001)
TCGA-KN-8428-01	13	97484970	97484970	C	T	HS6ST3	Missense_Mutation	p.R312C	0.39	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	14	100141822	100141822	G	A	HHIPL1	Silent	p.L736L	0.40		
TCGA-KN-8428-01	14	101350657	101350657	C	T	RTL1	Missense_Mutation	p.E157K	0.18	tolerated(0.42)	benign(0.001)
TCGA-KN-8428-01	14	102807759	102807759	C	T	ZNF839	Missense_Mutation	p.P676L	0.46	deleterious(0.03)	benign(0.033)
TCGA-KN-8428-01	14	103988669	103988669	G	A	CKB	Silent	p.D54D	0.28		
TCGA-KN-8428-01	14	104431775	104431775	C	T	TDRD9	Missense_Mutation	p.R176C	0.26	deleterious(0.04)	benign(0.082)
TCGA-KN-8428-01	14	105416582	105416582	C	T	AHNAK2	Missense_Mutation	p.G1736S	0.43		benign(0.163)
TCGA-KN-8428-01	14	106307313	106307313	G	A	IGHD	Silent	p.N242N	0.18		
TCGA-KN-8428-01	14	19988238	19988238	T	C	POTEM	3'UTR		0.06		
TCGA-KN-8428-01	14	20502143	20502143	C	T	OR4K13	Missense_Mutation	p.V259I	0.41	tolerated(0.36)	benign(0.005)
TCGA-KN-8428-01	14	20763923	20763923	G	A	TTC5	Nonsense_Mutation	p.R263*	0.39		
TCGA-KN-8428-01	14	20854663	20854663	C	A	TEP1	Missense_Mutation	p.S935I	0.44	tolerated(0.2)	possibly_damaging(0.736)
TCGA-KN-8428-01	14	21623218	21623218	G	A	OR5AU1	Missense_Mutation	p.R323C	0.23	deleterious(0)	benign(0.019)
TCGA-KN-8428-01	14	21834651	21834651	G	A	SUPT16H	Silent	p.D331D	0.23		
TCGA-KN-8428-01	14	23530539	23530539	G	A	ACIN1	Missense_Mutation	p.A1189V	0.13		possibly_damaging(0.881)
TCGA-KN-8428-01	14	23596496	23596496	G	A	SLC7A8	Missense_Mutation	p.R500W	0.21	deleterious(0.03)	benign(0.167)
TCGA-KN-8428-01	14	24615753	24615753	G	A	PSME2	Missense_Mutation	p.A13V	0.38	tolerated(0.39)	benign(0.016)
TCGA-KN-8428-01	14	24675808	24675808	G	A	TSSK4	Missense_Mutation	p.G107S	0.04	tolerated(0.18)	probably_damaging(0.994)
TCGA-KN-8428-01	14	24709841	24709841	C	T	TINF2	Missense_Mutation	p.R282H	0.41	deleterious_low_confidence(0.03)	possibly_damaging(0.715)
TCGA-KN-8428-01	14	24877295	24877295	G	A	NYNRIN	Missense_Mutation	p.R140Q	0.38	tolerated_low_confidence(0.05)	benign(0.116)
TCGA-KN-8428-01	14	24879316	24879316	C	T	NYNRIN	Silent	p.H772H	0.21		
TCGA-KN-8428-01	14	29238809	29238809	G	A	FOXG1	3'UTR		0.22		
TCGA-KN-8428-01	14	31609189	31609189	G	A	HECTD1	Missense_Mutation	p.A963V	0.41	tolerated(1)	benign(0.056)
TCGA-KN-8428-01	14	34145548	34145548	C	T	NPAS3	Silent	p.A230A	0.49		
TCGA-KN-8428-01	14	50272839	50272839	G	A	NEMF	Missense_Mutation	p.P586L	0.14	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	14	51245506	51245506	C	T	NIN	Missense_Mutation	p.R151H	0.49	tolerated(0.32)	benign(0.004)
TCGA-KN-8428-01	14	53100600	53100600	G	A	GPR137C	Missense_Mutation	p.D350N	0.04	deleterious(0)	probably_damaging(0.982)
TCGA-KN-8428-01	14	62463128	62463128	C	T	SYT16	Missense_Mutation	p.R131C	0.45	tolerated_low_confidence(0.18)	benign(0.326)
TCGA-KN-8428-01	14	68944490	68944490	A	G	RAD51B	Intron		0.09		
TCGA-KN-8428-01	14	73441651	73441651	G	A	ZFYVE1	Missense_Mutation	p.A608V	0.26	tolerated(0.17)	benign(0.108)
TCGA-KN-8428-01	14	73570174	73570174	G	A	RBM25	Missense_Mutation	p.R381H	0.37		unknown(0)
TCGA-KN-8428-01	14	74825789	74825789	G	A	VRTN	3'UTR		0.21		
TCGA-KN-8428-01	14	75302098	75302098	G	A	YLPM1	Missense_Mutation	p.R2142Q	0.42		possibly_damaging(0.469)
TCGA-KN-8428-01	14	75555313	75555313	G	T	NEK9	Missense_Mutation	p.P825H	0.16	deleterious_low_confidence(0)	probably_damaging(0.999)
TCGA-KN-8428-01	14	88477823	88477823	G	A	GPR65	Missense_Mutation	p.R211Q	0.16	tolerated(0.17)	benign(0.028)
TCGA-KN-8428-01	14	88945933	88945933	C	T	PTPN21	Silent	p.A614A	0.25		
TCGA-KN-8428-01	14	89307767	89307767	A	G	TTC8	Splice_Site	p.X164_splice	0.22		
TCGA-KN-8428-01	14	91366523	91366523	A	C	RPS6KA5	Missense_Mutation	p.S436R	0.20	deleterious(0)	probably_damaging(0.991)
TCGA-KN-8428-01	14	92336531	92336531	C	T	FBLN5	3'UTR		0.42		
TCGA-KN-8428-01	14	93277911	93277911	C	T	GOLGA5	Missense_Mutation	p.R378C	0.41	deleterious(0.01)	benign(0.143)
TCGA-KN-8428-01	14	96730440	96730440	C	T	BDKRB1	Missense_Mutation	p.H141Y	0.48	tolerated(0.15)	benign(0.02)
TCGA-KN-8428-01	14	96772058	96772058	G	A	ATG2B	Missense_Mutation	p.T1534M	0.18	deleterious(0.03)	benign(0.178)
TCGA-KN-8428-01	15	22999456	22999456	C	T	CYFIP1	Missense_Mutation	p.R1110C	0.24	tolerated(0.18)	possibly_damaging(0.579)
TCGA-KN-8428-01	15	23889371	23889371	A	T	MAGEL2	Silent	p.P570P	0.15		
TCGA-KN-8428-01	15	28427617	28427617	G	A	HERC2	Missense_Mutation	p.T2956M	0.19		possibly_damaging(0.864)
TCGA-KN-8428-01	15	30010880	30010880	G	A	TJP1	Missense_Mutation	p.R1156W	0.22	deleterious_low_confidence(0)	probably_damaging(0.915)
TCGA-KN-8428-01	15	35529895	35529895	C	T	ANP32AP1	RNA		0.17		
TCGA-KN-8428-01	15	40916787	40916787	A	G	CASC5	Missense_Mutation	p.Q1468R	0.08	deleterious(0.04)	benign(0.382)
TCGA-KN-8428-01	15	41105576	41105576	C	T	ZFYVE19	Silent	p.D357D	0.48		
TCGA-KN-8428-01	15	42131115	42131115	G	T	PLA2G4B	Intron		0.16		
TCGA-KN-8428-01	15	42193092	42193092	C	T	EHD4	Silent	p.S459S	0.13		
TCGA-KN-8428-01	15	43585733	43585733	C	T	TGM7	Missense_Mutation	p.R36H	0.19	deleterious(0.01)	probably_damaging(0.984)
TCGA-KN-8428-01	15	43620686	43620686	T	C	LCMT2	Missense_Mutation	p.T668A	0.04	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	15	43821457	43821457	C	T	MAP1A	Missense_Mutation	p.R2596W	0.28		probably_damaging(1)
TCGA-KN-8428-01	15	45396231	45396231	G	A	DUOX2	Missense_Mutation	p.R861C	0.04	deleterious(0)	possibly_damaging(0.906)
TCGA-KN-8428-01	15	48703307	48703307	A	G	FBN1	Silent	p.S2832S	0.08		
TCGA-KN-8428-01	15	48755319	48755319	C	T	FBN1	Silent	p.A1728A	0.19		
TCGA-KN-8428-01	15	49030737	49030737	G	A	CEP152	Silent	p.S1614S	0.19		
TCGA-KN-8428-01	15	49304966	49304966	G	T	SECISBP2L	Missense_Mutation	p.P537H	0.23	deleterious(0.02)	benign(0.443)
TCGA-KN-8428-01	15	54919333	54919333	A	T	UNC13C	3'UTR		0.33		
TCGA-KN-8428-01	15	63966709	63966709	G	A	HERC1	Nonsense_Mutation	p.R2560*	0.40		
TCGA-KN-8428-01	15	65157910	65157910	C	T	PLEKHO2	Silent	p.G432G	0.39		
TCGA-KN-8428-01	15	65391969	65391969	C	T	UBAP1L	Silent	p.A261A	0.17		
TCGA-KN-8428-01	15	65688086	65688086	A	G	IGDCC4	Splice_Site	p.X471_splice	0.20		
TCGA-KN-8428-01	15	66214758	66214758	G	A	MEGF11	Silent	p.C625C	0.25		
TCGA-KN-8428-01	15	67358664	67358664	C	T	SMAD3	Nonsense_Mutation	p.Q58*	0.38		
TCGA-KN-8428-01	15	69548276	69548276	G	T	GLCE	Missense_Mutation	p.S44I	0.20	tolerated_low_confidence(0.21)	benign(0.006)
TCGA-KN-8428-01	15	72292238	72292238	G	A	MYO9A	Missense_Mutation	p.T475M	0.31	deleterious(0.02)	possibly_damaging(0.647)
TCGA-KN-8428-01	15	73615982	73615982	C	T	HCN4	Missense_Mutation	p.G818S	0.54	tolerated_low_confidence(0.15)	unknown(0)
TCGA-KN-8428-01	15	74315583	74315583	C	T	PML	Silent	p.Y339Y	0.46		
TCGA-KN-8428-01	15	74327978	74327978	C	T	PML	Intron		0.24		
TCGA-KN-8428-01	15	74554873	74554873	C	T	CCDC33	Missense_Mutation	p.T93M	0.14	deleterious(0.02)	probably_damaging(0.968)
TCGA-KN-8428-01	15	75108525	75108525	G	A	LMAN1L	Missense_Mutation	p.R68Q	0.08	deleterious(0.01)	possibly_damaging(0.859)
TCGA-KN-8428-01	15	75949418	75949418	C	T	SNX33	Silent	p.A529A	0.45		
TCGA-KN-8428-01	15	75980709	75980709	C	T	CSPG4	Silent	p.A899A	0.43		
TCGA-KN-8428-01	15	76508832	76508832	C	A	ETFA	3'UTR		0.48		
TCGA-KN-8428-01	15	81295560	81295560	C	T	MESDC1	Silent	p.G316G	0.41		
TCGA-KN-8428-01	15	81630237	81630237	C	T	TMC3	Missense_Mutation	p.A704T	0.40	deleterious(0.02)	possibly_damaging(0.775)
TCGA-KN-8428-01	15	81637207	81637207	G	A	TMC3	Missense_Mutation	p.T473I	0.20	tolerated(0.1)	benign(0.007)
TCGA-KN-8428-01	15	83527811	83527811	T	C	HOMER2	Missense_Mutation	p.N166S	0.06	tolerated(0.46)	probably_damaging(0.993)
TCGA-KN-8428-01	15	85403008	85403008	G	A	ALPK3	Missense_Mutation	p.A1525T	0.21	deleterious(0.01)	probably_damaging(0.983)
TCGA-KN-8428-01	15	86807816	86807816	G	A	AGBL1	Missense_Mutation	p.A426T	0.39	tolerated(0.58)	benign(0.003)
TCGA-KN-8428-01	15	88420245	88420245	C	T	NTRK3	Missense_Mutation	p.R814Q	0.17	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	15	91835860	91835860	G	A	SV2B	3'UTR		0.48		
TCGA-KN-8428-01	15	99454671	99454671	G	A	IGF1R	Splice_Site	p.X530_splice	0.21		
TCGA-KN-8428-01	16	1306310	1306310	G	A	TPSD1	Missense_Mutation	p.S10N	0.24	tolerated(0.25)	unknown(0)
TCGA-KN-8428-01	16	1306311	1306311	C	T	TPSD1	Silent	p.S10S	0.23		
TCGA-KN-8428-01	16	15711251	15711251	G	A	KIAA0430	Silent	p.H954H	0.35		
TCGA-KN-8428-01	16	1574679	1574679	G	A	IFT140	Silent	p.N1005N	0.28		
TCGA-KN-8428-01	16	15818057	15818057	G	A	NDE1	Silent	p.T319T	0.22		
TCGA-KN-8428-01	16	1612076	1612076	G	A	IFT140	Silent	p.H703H	0.61		
TCGA-KN-8428-01	16	19126839	19126839	A	C	ITPRIPL2	Silent	p.A352A	0.28		
TCGA-KN-8428-01	16	19127403	19127403	A	G	ITPRIPL2	3'UTR		0.29		
TCGA-KN-8428-01	16	19236099	19236099	T	C	SYT17	Silent	p.N389N	0.12		
TCGA-KN-8428-01	16	19562762	19562762	C	T	CCP110	3'UTR		0.62		
TCGA-KN-8428-01	16	1991404	1991404	C	T	MSRB1	Missense_Mutation	p.V20I	0.31	tolerated(1)	benign(0)
TCGA-KN-8428-01	16	2026870	2026870	C	T	TBL3	Missense_Mutation	p.P450S	0.30	tolerated(0.47)	benign(0.002)
TCGA-KN-8428-01	16	20360337	20360337	C	T	UMOD	Missense_Mutation	p.E96K	0.22	tolerated(0.23)	benign(0.131)
TCGA-KN-8428-01	16	20873571	20873571	C	T	DCUN1D3	Missense_Mutation	p.R97H	0.06	tolerated(0.16)	benign(0.006)
TCGA-KN-8428-01	16	2093638	2093638	C	T	NTHL1	Silent	p.A213A	0.30		
TCGA-KN-8428-01	16	20996802	20996802	C	T	DNAH3	Missense_Mutation	p.R2421H	0.28	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	16	21734300	21734300	G	A	OTOA	Splice_Site	p.X627_splice	0.12		
TCGA-KN-8428-01	16	21968871	21968871	G	A	UQCRC2	Missense_Mutation	p.R84H	0.21	deleterious(0.02)	probably_damaging(0.962)
TCGA-KN-8428-01	16	2226329	2226329	G	A	TRAF7	Missense_Mutation	p.A648T	0.52	tolerated(0.21)	benign(0.121)
TCGA-KN-8428-01	16	23999859	23999859	A	G	PRKCB	Missense_Mutation	p.H79R	0.18	deleterious(0)	probably_damaging(0.972)
TCGA-KN-8428-01	16	2580968	2580968	C	T	CEMP1	Missense_Mutation	p.G36D	0.27	deleterious_low_confidence(0)	probably_damaging(0.969)
TCGA-KN-8428-01	16	28603675	28603675	C	T	SULT1A2	Silent	p.S228S	0.12		
TCGA-KN-8428-01	16	30097724	30097724	C	T	TBX6	Missense_Mutation	p.R378H	0.62	deleterious_low_confidence(0.01)	benign(0.002)
TCGA-KN-8428-01	16	30748499	30748499	C	T	SRCAP	Missense_Mutation	p.R2380W	0.10		probably_damaging(0.973)
TCGA-KN-8428-01	16	30777565	30777565	G	A	RNF40	Missense_Mutation	p.E359K	0.22	deleterious(0.05)	benign(0.31)
TCGA-KN-8428-01	16	31090347	31090347	G	A	ZNF646	Missense_Mutation	p.R901H	0.62	tolerated(0.07)	probably_damaging(0.996)
TCGA-KN-8428-01	16	32077388	32077388	G	A	IGHV3OR16-9	Silent	p.E1E	0.28		
TCGA-KN-8428-01	16	3334016	3334016	C	T	ZNF263	Silent	p.C66C	0.71		
TCGA-KN-8428-01	16	4934370	4934370	G	A	PPL	Missense_Mutation	p.A1429V	0.28	tolerated(0.07)	benign(0.001)
TCGA-KN-8428-01	16	4940317	4940317	G	A	PPL	Silent	p.S727S	0.21		
TCGA-KN-8428-01	16	49671194	49671194	G	A	ZNF423	Silent	p.S623S	0.32		
TCGA-KN-8428-01	16	55360358	55360358	C	T	IRX6	Silent	p.Y52Y	0.27		
TCGA-KN-8428-01	16	55690630	55690630	G	A	SLC6A2	Silent	p.P8P	0.46		
TCGA-KN-8428-01	16	57188284	57188284	G	A	FAM192A	Missense_Mutation	p.S228L	0.80	deleterious(0)	benign(0.305)
TCGA-KN-8428-01	16	727990	727990	G	A	RHBDL1	Missense_Mutation	p.A419T	0.26	tolerated(0.05)	probably_damaging(0.99)
TCGA-KN-8428-01	16	72822644	72822644	C	T	ZFHX3	Silent	p.S3177S	0.09		
TCGA-KN-8428-01	16	77228770	77228770	C	A	MON1B	Silent	p.A338A	0.10		
TCGA-KN-8428-01	16	818456	818456	G	A	MSLN	Silent	p.P566P	0.33		
TCGA-KN-8428-01	16	84353088	84353088	C	T	WFDC1	Missense_Mutation	p.S158L	0.57	deleterious(0.01)	benign(0.267)
TCGA-KN-8428-01	16	84778426	84778426	C	T	USP10	Silent	p.I113I	0.69		
TCGA-KN-8428-01	16	89169104	89169104	G	A	ACSF3	Silent	p.A253A	0.49		
TCGA-KN-8428-01	16	90020686	90020686	G	A	DEF8	Missense_Mutation	p.R70H	0.55	deleterious_low_confidence(0.02)	benign(0.049)
TCGA-KN-8428-01	17	12896262	12896262	C	T	ELAC2	Missense_Mutation	p.R785Q	0.86	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	17	16723391	16723391	G	A	AC022596.6	RNA		0.78		
TCGA-KN-8428-01	17	18052173	18052173	C	T	MYO15A	Missense_Mutation	p.S2288L	0.35		unknown(0)
TCGA-KN-8428-01	17	18923133	18923133	C	T	SLC5A10	Silent	p.A522A	0.14		
TCGA-KN-8428-01	17	27423863	27423863	C	T	MYO18A	Missense_Mutation	p.R1434Q	0.07	tolerated(0.05)	possibly_damaging(0.904)
TCGA-KN-8428-01	17	29653046	29653046	T	C	NF1	Missense_Mutation	p.C1682R	0.42	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	17	3649159	3649159	G	A	ITGAE	Silent	p.L740L	0.79		
TCGA-KN-8428-01	17	36499408	36499408	G	A	GPR179	Missense_Mutation	p.P89S	0.77	tolerated(0.35)	benign(0.009)
TCGA-KN-8428-01	17	37900401	37900401	C	T	GRB7	Missense_Mutation	p.R271C	0.06	deleterious(0)	probably_damaging(0.927)
TCGA-KN-8428-01	17	38345215	38345215	C	T	RAPGEFL1	Missense_Mutation	p.R105W	0.85	deleterious(0)	probably_damaging(0.94)
TCGA-KN-8428-01	17	3839671	3839671	G	A	ATP2A3	Missense_Mutation	p.T805M	0.06	deleterious(0.01)	probably_damaging(0.999)
TCGA-KN-8428-01	17	38512460	38512460	G	T	RARA	Silent	p.P457P	0.43		
TCGA-KN-8428-01	17	39411913	39411913	C	T	KRTAP9-9	Silent	p.G92G	0.81		
TCGA-KN-8428-01	17	39673348	39673348	C	T	KRT15	Missense_Mutation	p.D190N	0.39	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	17	43004364	43004364	C	T	KIF18B	Missense_Mutation	p.V787I	0.25	tolerated(0.44)	benign(0.001)
TCGA-KN-8428-01	17	4500239	4500239	C	T	SMTNL2	Silent	p.L358L	0.21		
TCGA-KN-8428-01	17	5436264	5436264	G	A	NLRP1	Silent	p.C1058C	0.78		
TCGA-KN-8428-01	17	54985879	54985879	C	T	TRIM25	Missense_Mutation	p.G215R	0.45	tolerated(0.61)	benign(0.142)
TCGA-KN-8428-01	17	55083674	55083674	G	A	SCPEP1	3'UTR		0.28		
TCGA-KN-8428-01	17	56247381	56247381	G	A	OR4D2	Missense_Mutation	p.R122H	0.40	deleterious(0.03)	benign(0.035)
TCGA-KN-8428-01	17	56247407	56247407	C	T	OR4D2	Missense_Mutation	p.R131C	0.82	deleterious(0)	possibly_damaging(0.582)
TCGA-KN-8428-01	17	56290442	56290442	C	T	MKS1	Silent	p.T253T	0.66		
TCGA-KN-8428-01	17	56599003	56599003	C	T	SEPT4	Missense_Mutation	p.R322Q	0.75	tolerated(0.19)	benign(0.329)
TCGA-KN-8428-01	17	59445725	59445725	C	T	BCAS3	Silent	p.C836C	0.24		
TCGA-KN-8428-01	17	62291323	62291323	G	A	TEX2	Silent	p.P85P	0.82		
TCGA-KN-8428-01	17	65134098	65134098	G	A	HELZ	Nonsense_Mutation	p.R968*	0.31		
TCGA-KN-8428-01	17	6941569	6941569	G	A	SLC16A13	Missense_Mutation	p.V148M	0.68	deleterious(0.01)	possibly_damaging(0.867)
TCGA-KN-8428-01	17	7256999	7256999	A	T	KCTD11	3'UTR		0.79		
TCGA-KN-8428-01	17	73626346	73626346	C	T	RECQL5	Missense_Mutation	p.R577Q	0.40	tolerated(0.62)	benign(0.002)
TCGA-KN-8428-01	17	74157965	74157965	G	A	RNF157	Missense_Mutation	p.T304M	0.65	deleterious(0.01)	probably_damaging(0.953)
TCGA-KN-8428-01	17	75471796	75471796	C	T	SEPT9	Intron		0.71		
TCGA-KN-8428-01	17	75494855	75494855	A	C	SEPT9	3'UTR		0.50		
TCGA-KN-8428-01	17	7578263	7578263	G	A	TP53	Nonsense_Mutation	p.R196*	0.78		
TCGA-KN-8428-01	17	76071339	76071339	C	T	TNRC6C	Missense_Mutation	p.R1011C	0.22	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	17	7814222	7814222	G	A	CHD3	Missense_Mutation	p.A1997T	0.87		possibly_damaging(0.499)
TCGA-KN-8428-01	17	78320904	78320904	C	T	RNF213	Silent	p.L2923L	0.39		
TCGA-KN-8428-01	17	79203107	79203107	G	A	ENTHD2	Missense_Mutation	p.S400L	0.20	tolerated(0.75)	benign(0.001)
TCGA-KN-8428-01	17	79226231	79226231	G	A	SLC38A10	Missense_Mutation	p.A570V	0.82	tolerated(0.48)	benign(0.001)
TCGA-KN-8428-01	17	79512906	79512906	C	T	C17orf70	Missense_Mutation	p.V726M	0.25	tolerated(0.07)	benign(0.161)
TCGA-KN-8428-01	17	79663491	79663491	G	A	HGS	Missense_Mutation	p.E500K	0.61	deleterious(0)	probably_damaging(0.983)
TCGA-KN-8428-01	17	8044491	8044491	G	A	PER1	Silent	p.G1256G	0.74		
TCGA-KN-8428-01	17	8296625	8296625	T	C	RNF222	Missense_Mutation	p.D52G	0.08	deleterious(0.01)	probably_damaging(0.999)
TCGA-KN-8428-01	18	12254345	12254345	G	T	CIDEA	5'UTR		0.28		
TCGA-KN-8428-01	18	19070219	19070219	C	T	GREB1L	Silent	p.R979R	0.21		
TCGA-KN-8428-01	18	21474920	21474920	C	T	LAMA3	Silent	p.G1837G	0.17		
TCGA-KN-8428-01	18	216576	216576	G	A	THOC1	Silent	p.S504S	0.08		
TCGA-KN-8428-01	18	2610781	2610781	C	T	NDC80	Missense_Mutation	p.T571M	0.41	deleterious(0)	probably_damaging(0.987)
TCGA-KN-8428-01	18	28972125	28972125	C	T	DSG4	Missense_Mutation	p.A276V	0.20	tolerated(0.14)	possibly_damaging(0.69)
TCGA-KN-8428-01	18	44057528	44057528	G	A	LOXHD1	Intron		0.16		
TCGA-KN-8428-01	18	44561229	44561229	G	T	TCEB3B	Missense_Mutation	p.P136H	0.20	tolerated(0.54)	probably_damaging(0.965)
TCGA-KN-8428-01	18	45567082	45567082	C	T	ZBTB7C	Missense_Mutation	p.G133R	0.06	tolerated(0.11)	possibly_damaging(0.894)
TCGA-KN-8428-01	18	46146071	46146071	G	A	CTIF	Silent	p.T45T	0.39		
TCGA-KN-8428-01	18	54358459	54358459	G	A	WDR7	Missense_Mutation	p.G244R	0.05	deleterious(0.01)	possibly_damaging(0.647)
TCGA-KN-8428-01	18	54591323	54591323	G	A	WDR7	Missense_Mutation	p.E1233K	0.19	deleterious(0.01)	probably_damaging(0.991)
TCGA-KN-8428-01	18	76886295	76886295	G	A	ATP9B	Missense_Mutation	p.R196Q	0.49	deleterious(0.02)	probably_damaging(0.984)
TCGA-KN-8428-01	18	77170445	77170445	C	T	NFATC1	Missense_Mutation	p.P44L	0.15	deleterious(0.02)	benign(0.022)
TCGA-KN-8428-01	19	10246467	10246467	T	C	DNMT1	Missense_Mutation	p.Q1573R	0.12	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8428-01	19	10398019	10398019	G	A	ICAM4	Missense_Mutation	p.A111T	0.27	tolerated_low_confidence(0.17)	probably_damaging(0.953)
TCGA-KN-8428-01	19	10477123	10477123	A	G	TYK2	Missense_Mutation	p.I200T	0.18	tolerated(0.07)	benign(0.028)
TCGA-KN-8428-01	19	10692022	10692022	A	G	AP1M2	Missense_Mutation	p.I198T	0.25	deleterious(0)	benign(0.133)
TCGA-KN-8428-01	19	10794618	10794618	C	T	ILF3	Silent	p.Y681Y	0.41		
TCGA-KN-8428-01	19	10818003	10818003	C	T	QTRT1	Silent	p.D159D	0.14		
TCGA-KN-8428-01	19	11453630	11453630	C	T	TMEM205	Missense_Mutation	p.R144Q	0.55	tolerated(0.15)	benign(0.004)
TCGA-KN-8428-01	19	11568980	11568980	C	T	ELAVL3	Silent	p.A203A	0.36		
TCGA-KN-8428-01	19	11892622	11892622	T	C	ZNF441	Silent	p.H661H	0.31		
TCGA-KN-8428-01	19	12155144	12155144	C	T	ZNF878	Missense_Mutation	p.E358K	0.57	tolerated(0.31)	benign(0.064)
TCGA-KN-8428-01	19	12574914	12574914	G	A	ZNF709	Nonsense_Mutation	p.R608*	0.31		
TCGA-KN-8428-01	19	12812988	12812988	C	T	TNPO2	Missense_Mutation	p.R770H	0.29	tolerated_low_confidence(0.35)	benign(0.01)
TCGA-KN-8428-01	19	13183866	13183866	G	A	NFIX	Missense_Mutation	p.G189R	0.19	tolerated(0.11)	probably_damaging(0.976)
TCGA-KN-8428-01	19	13186460	13186460	C	T	NFIX	Silent	p.S310S	0.21		
TCGA-KN-8428-01	19	13248350	13248350	C	T	NACC1	Missense_Mutation	p.R429W	0.06	deleterious(0)	probably_damaging(0.954)
TCGA-KN-8428-01	19	13936443	13936443	G	A	ZSWIM4	Silent	p.A648A	0.69		
TCGA-KN-8428-01	19	14268815	14268815	C	T	LPHN1	Missense_Mutation	p.R810H	0.20	tolerated(0.08)	possibly_damaging(0.614)
TCGA-KN-8428-01	19	14273936	14273936	C	T	LPHN1	Missense_Mutation	p.R231H	0.53	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	19	15063793	15063793	C	T	SLC1A6	Silent	p.S482S	0.19		
TCGA-KN-8428-01	19	15271334	15271334	G	A	NOTCH3	3'UTR		0.40		
TCGA-KN-8428-01	19	15297722	15297722	G	A	NOTCH3	Missense_Mutation	p.R640C	0.26	deleterious(0.03)	probably_damaging(0.991)
TCGA-KN-8428-01	19	15752327	15752327	C	A	CYP4F3	Silent	p.I34I	0.34		
TCGA-KN-8428-01	19	1621856	1621856	G	A	TCF3	Silent	p.S312S	0.28		
TCGA-KN-8428-01	19	16345014	16345014	G	A	AP1M1	Missense_Mutation	p.R405H	0.30	deleterious(0)	benign(0.344)
TCGA-KN-8428-01	19	16976291	16976291	G	A	SIN3B	Missense_Mutation	p.R517Q	0.23	deleterious(0.01)	benign(0.149)
TCGA-KN-8428-01	19	17390007	17390007	A	G	BABAM1	3'UTR		0.29		
TCGA-KN-8428-01	19	1881247	1881247	C	T	ABHD17A	Missense_Mutation	p.V107M	0.33	deleterious(0.01)	possibly_damaging(0.707)
TCGA-KN-8428-01	19	1913316	1913316	C	T	ADAT3	3'UTR		0.33		
TCGA-KN-8428-01	19	19369385	19369385	C	T	HAPLN4	Missense_Mutation	p.R255H	0.23	deleterious(0)	probably_damaging(0.989)
TCGA-KN-8428-01	19	20236289	20236289	G	A	CTC-260E6.2	RNA		0.07		
TCGA-KN-8428-01	19	20735292	20735292	G	A	ZNF737	Missense_Mutation	p.A72V	0.04	tolerated(0.07)	possibly_damaging(0.824)
TCGA-KN-8428-01	19	21608170	21608170	G	A	ZNF493	3'UTR		0.25		
TCGA-KN-8428-01	19	2249496	2249496	C	T	AMH	Silent	p.C55C	0.22		
TCGA-KN-8428-01	19	2757763	2757763	G	A	SGTA	Missense_Mutation	p.S252L	0.31	deleterious(0.04)	probably_damaging(0.998)
TCGA-KN-8428-01	19	3179323	3179323	T	G	S1PR4	Missense_Mutation	p.M178R	0.07	tolerated(0.13)	benign(0.26)
TCGA-KN-8428-01	19	33137475	33137475	G	A	ANKRD27	Missense_Mutation	p.A87V	0.28	tolerated(0.19)	possibly_damaging(0.483)
TCGA-KN-8428-01	19	33666433	33666433	G	A	WDR88	Silent	p.S458S	0.37		
TCGA-KN-8428-01	19	34984440	34984440	G	A	WTIP	Missense_Mutation	p.R315Q	0.38	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8428-01	19	35941487	35941487	C	T	FFAR2	Silent	p.L291L	0.36		
TCGA-KN-8428-01	19	36120479	36120479	G	A	RBM42	Silent	p.A62A	0.30		
TCGA-KN-8428-01	19	36210898	36210898	C	T	KMT2B	Missense_Mutation	p.R217W	0.39		unknown(0)
TCGA-KN-8428-01	19	36255795	36255795	C	T	C19orf55	Missense_Mutation	p.T195M	0.45	tolerated(0.17)	possibly_damaging(0.676)
TCGA-KN-8428-01	19	36279135	36279135	C	T	ARHGAP33	Missense_Mutation	p.P1062L	0.41	deleterious_low_confidence(0)	possibly_damaging(0.808)
TCGA-KN-8428-01	19	36349605	36349605	G	A	KIRREL2	Splice_Site	p.X121_splice	0.20		
TCGA-KN-8428-01	19	37916858	37916858	C	T	ZNF569	Silent	p.P50P	0.39		
TCGA-KN-8428-01	19	38386820	38386820	G	A	WDR87	Intron		0.43		
TCGA-KN-8428-01	19	38901988	38901988	G	A	RASGRP4	Missense_Mutation	p.R572W	0.11	deleterious(0)	probably_damaging(0.956)
TCGA-KN-8428-01	19	39090577	39090577	T	C	MAP4K1	Missense_Mutation	p.M553V	0.15	deleterious(0)	benign(0.003)
TCGA-KN-8428-01	19	39899071	39899071	C	-	ZFP36	Frame_Shift_Del	p.L246Wfs*126	0.19		
TCGA-KN-8428-01	19	40366434	40366434	G	A	FCGBP	Silent	p.R4600R	0.43		
TCGA-KN-8428-01	19	40730407	40730407	G	A	CNTD2	Silent	p.C167C	0.27		
TCGA-KN-8428-01	19	41072217	41072217	G	A	SPTBN4	Silent	p.A2096A	0.27		
TCGA-KN-8428-01	19	41198899	41198899	T	C	ADCK4	Missense_Mutation	p.Q418R	0.21	tolerated(0.26)	benign(0.002)
TCGA-KN-8428-01	19	41442033	41442033	T	C	CYP2B7P	RNA		0.09		
TCGA-KN-8428-01	19	42600329	42600329	G	A	POU2F2	Missense_Mutation	p.P190S	0.39	tolerated(0.53)	benign(0.256)
TCGA-KN-8428-01	19	42729973	42729973	G	A	ZNF526	Missense_Mutation	p.R473H	0.24	tolerated(0.09)	possibly_damaging(0.72)
TCGA-KN-8428-01	19	42754628	42754628	G	A	ERF	Missense_Mutation	p.R38W	0.21	deleterious(0)	probably_damaging(0.983)
TCGA-KN-8428-01	19	42861000	42861000	G	A	MEGF8	Missense_Mutation	p.R1499H	0.33	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	19	43965542	43965542	T	C	LYPD3	Silent	p.A334A	0.23		
TCGA-KN-8428-01	19	4409549	4409549	G	A	CHAF1A	Silent	p.P251P	0.59		
TCGA-KN-8428-01	19	44661482	44661482	G	A	ZNF234	Missense_Mutation	p.R438H	0.27	deleterious(0.03)	probably_damaging(0.911)
TCGA-KN-8428-01	19	4511019	4511019	C	T	PLIN4	Missense_Mutation	p.A971T	0.33	tolerated(1)	benign(0)
TCGA-KN-8428-01	19	45207383	45207383	G	A	CEACAM16	Missense_Mutation	p.A160T	0.57	tolerated(1)	probably_damaging(0.94)
TCGA-KN-8428-01	19	45397308	45397308	G	A	TOMM40	Missense_Mutation	p.V210I	0.44	tolerated(0.98)	benign(0.053)
TCGA-KN-8428-01	19	46056710	46056710	G	A	OPA3	Intron		0.41		
TCGA-KN-8428-01	19	46308230	46308230	G	A	RSPH6A	Silent	p.F311F	0.13		
TCGA-KN-8428-01	19	48945611	48945611	G	A	GRIN2D	Missense_Mutation	p.R882H	0.41	deleterious(0)	possibly_damaging(0.661)
TCGA-KN-8428-01	19	49002432	49002432	G	A	LMTK3	Missense_Mutation	p.R661W	0.64		possibly_damaging(0.612)
TCGA-KN-8428-01	19	49206425	49206425	G	A	FUT2	Missense_Mutation	p.R71H	0.30	deleterious(0.01)	probably_damaging(1)
TCGA-KN-8428-01	19	49473833	49473833	G	A	GYS1	Silent	p.S593S	0.31		
TCGA-KN-8428-01	19	49564657	49564657	C	T	NTF4	Missense_Mutation	p.V200I	0.50	deleterious(0.02)	probably_damaging(0.995)
TCGA-KN-8428-01	19	50399428	50399428	G	T	IL4I1	Intron		0.51		
TCGA-KN-8428-01	19	50475120	50475120	C	T	VRK3	3'Flank		0.19		
TCGA-KN-8428-01	19	50548036	50548036	C	T	ZNF473	Silent	p.F112F	0.28		
TCGA-KN-8428-01	19	50760714	50760714	C	T	MYH14	Missense_Mutation	p.R735C	0.07	deleterious(0.01)	probably_damaging(0.999)
TCGA-KN-8428-01	19	51633476	51633476	G	T	SIGLEC9	Intron		0.25		
TCGA-KN-8428-01	19	51646040	51646040	G	A	SIGLEC7	Silent	p.Q138Q	0.40		
TCGA-KN-8428-01	19	52619951	52619951	T	C	ZNF616	Missense_Mutation	p.T156A	0.04	tolerated(0.12)	benign(0.023)
TCGA-KN-8428-01	19	54696083	54696083	T	C	TSEN34	Missense_Mutation	p.W202R	0.19	tolerated(0.23)	benign(0.175)
TCGA-KN-8428-01	19	55239156	55239156	G	A	KIR3DL3	Nonsense_Mutation	p.W145*	0.88		
TCGA-KN-8428-01	19	55995597	55995597	G	A	ZNF628	Missense_Mutation	p.A1013T	0.50	tolerated_low_confidence(0.18)	unknown(0)
TCGA-KN-8428-01	19	56011928	56011928	C	T	SSC5D	Missense_Mutation	p.R792C	0.49		probably_damaging(0.99)
TCGA-KN-8428-01	19	56024455	56024455	G	A	SSC5D	Missense_Mutation	p.A955T	0.42		benign(0.011)
TCGA-KN-8428-01	19	56024481	56024481	G	T	SSC5D	Silent	p.G963G	0.05		
TCGA-KN-8428-01	19	56109238	56109238	G	A	FIZ1	5'UTR		0.33		
TCGA-KN-8428-01	19	5707746	5707746	C	T	LONP1	Missense_Mutation	p.E342K	0.31	deleterious(0.01)	benign(0.26)
TCGA-KN-8428-01	19	57765510	57765510	T	G	ZNF805	Silent	p.T441T	0.24		
TCGA-KN-8428-01	19	579590	579590	A	G	BSG	Missense_Mutation	p.H169R	0.38	tolerated(0.08)	probably_damaging(0.963)
TCGA-KN-8428-01	19	58017797	58017797	G	A	ZNF773	Missense_Mutation	p.V112I	0.43	tolerated(0.14)	benign(0)
TCGA-KN-8428-01	19	58264681	58264681	C	T	AC003006.7	Silent	p.D61D	0.06		
TCGA-KN-8428-01	19	6481729	6481729	C	T	DENND1C	5'UTR		0.22		
TCGA-KN-8428-01	19	6733232	6733232	G	A	GPR108	Silent	p.S268S	0.17		
TCGA-KN-8428-01	19	7505040	7505040	C	T	ARHGEF18	Missense_Mutation	p.R72C	0.24	tolerated_low_confidence(0.07)	benign(0.003)
TCGA-KN-8428-01	19	7521290	7521290	G	A	ARHGEF18	Splice_Site	p.X539_splice	0.25		
TCGA-KN-8428-01	19	7606949	7606949	C	T	PNPLA6	Silent	p.I425I	0.33		
TCGA-KN-8428-01	19	7927392	7927392	G	A	EVI5L	Missense_Mutation	p.R640H	0.12	tolerated(0.21)	benign(0.001)
TCGA-KN-8428-01	19	8201286	8201286	C	T	FBN3	Missense_Mutation	p.R444H	0.12	tolerated(0.06)	benign(0.223)
TCGA-KN-8428-01	19	8209801	8209801	G	A	FBN3	Silent	p.C167C	0.06		
TCGA-KN-8428-01	19	8592315	8592315	C	T	MYO1F	Missense_Mutation	p.R794Q	0.15	tolerated(0.19)	benign(0.21)
TCGA-KN-8428-01	19	9967485	9967485	G	A	OLFM2	Missense_Mutation	p.R229W	0.23	deleterious(0)	probably_damaging(0.946)
TCGA-KN-8428-01	1	101186203	101186203	C	T	VCAM1	Missense_Mutation	p.T79M	0.77	deleterious(0.03)	possibly_damaging(0.576)
TCGA-KN-8428-01	1	10155570	10155570	C	T	UBE4B	Missense_Mutation	p.S88L	0.04	deleterious(0)	benign(0.32)
TCGA-KN-8428-01	1	10510334	10510334	C	T	CORT	Silent	p.T18T	0.36		
TCGA-KN-8428-01	1	10713846	10713846	G	A	CASZ1	Silent	p.A756A	0.79		
TCGA-KN-8428-01	1	109735386	109735386	C	T	KIAA1324	Nonsense_Mutation	p.R613*	0.87		
TCGA-KN-8428-01	1	110211966	110211966	C	T	GSTM2	Missense_Mutation	p.R78W	0.04	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	1	110709687	110709687	G	A	SLC6A17	Missense_Mutation	p.G46S	0.88	tolerated(0.97)	benign(0.001)
TCGA-KN-8428-01	1	117150686	117150686	C	T	IGSF3	Missense_Mutation	p.R367H	0.77	tolerated(0.13)	probably_damaging(0.995)
TCGA-KN-8428-01	1	14107224	14107224	G	A	PRDM2	Silent	p.P978P	0.81		
TCGA-KN-8428-01	1	144014069	144014069	G	A	SRGAP2B	RNA		0.12		
TCGA-KN-8428-01	1	144879218	144879218	C	T	PDE4DIP	Missense_Mutation	p.S1411N	0.43	deleterious(0)	possibly_damaging(0.894)
TCGA-KN-8428-01	1	150259023	150259023	G	A	C1orf51	Missense_Mutation	p.S272N	0.46	deleterious_low_confidence(0)	possibly_damaging(0.526)
TCGA-KN-8428-01	1	150445515	150445515	G	A	RPRD2	Missense_Mutation	p.R1364H	0.10	deleterious_low_confidence(0)	probably_damaging(0.984)
TCGA-KN-8428-01	1	150679259	150679259	C	T	HORMAD1	Missense_Mutation	p.G192S	0.32	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	1	151339349	151339349	G	A	SELENBP1	Silent	p.F171F	0.26		
TCGA-KN-8428-01	1	151377515	151377515	G	A	POGZ	Silent	p.P1332P	0.44		
TCGA-KN-8428-01	1	152784855	152784855	G	A	LCE1B	5'UTR		0.35		
TCGA-KN-8428-01	1	153516294	153516294	C	T	S100A4	Missense_Mutation	p.A83T	0.39	tolerated(1)	benign(0.011)
TCGA-KN-8428-01	1	155629537	155629537	A	G	YY1AP1	Missense_Mutation	p.S860P	0.45	tolerated_low_confidence(0.05)	benign(0.019)
TCGA-KN-8428-01	1	155921539	155921539	G	A	ARHGEF2	Missense_Mutation	p.P734L	0.39	tolerated(0.42)	possibly_damaging(0.859)
TCGA-KN-8428-01	1	15616138	15616138	C	T	FHAD1	Missense_Mutation	p.R182C	0.10	tolerated(0.09)	possibly_damaging(0.517)
TCGA-KN-8428-01	1	156785800	156785800	C	T	SH2D2A	Missense_Mutation	p.A41T	0.41	tolerated(0.57)	benign(0.01)
TCGA-KN-8428-01	1	156814312	156814312	G	T	INSRR	Silent	p.T893T	0.41		
TCGA-KN-8428-01	1	159898623	159898623	C	T	IGSF9	Missense_Mutation	p.R852H	0.51	deleterious(0)	probably_damaging(0.994)
TCGA-KN-8428-01	1	16053893	16053893	C	T	PLEKHM2	Silent	p.P442P	0.83		
TCGA-KN-8428-01	1	161139815	161139815	G	T	PPOX	Splice_Site	p.X329_splice	0.52		
TCGA-KN-8428-01	1	167088687	167088687	G	A	DUSP27	Silent	p.A213A	0.28		
TCGA-KN-8428-01	1	16817159	16817159	C	T	CROCCP3	RNA		0.23		
TCGA-KN-8428-01	1	168282043	168282043	G	A	TBX19	Missense_Mutation	p.G384R	0.80	deleterious(0.02)	possibly_damaging(0.657)
TCGA-KN-8428-01	1	169391220	169391220	C	T	CCDC181	Missense_Mutation	p.R150Q	0.32	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	1	17664602	17664602	G	A	PADI4	Missense_Mutation	p.E160K	0.88	tolerated(0.54)	benign(0.002)
TCGA-KN-8428-01	1	180135639	180135639	C	A	QSOX1	Silent	p.A93A	0.21		
TCGA-KN-8428-01	1	182509444	182509444	G	A	RGSL1	Missense_Mutation	p.A853T	0.79	tolerated(0.64)	benign(0.007)
TCGA-KN-8428-01	1	186289518	186289518	C	T	TPR	Missense_Mutation	p.R2165Q	0.19		possibly_damaging(0.78)
TCGA-KN-8428-01	1	1956478	1956478	C	T	GABRD	Missense_Mutation	p.R56W	0.86	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	1	20005813	20005813	C	T	HTR6	Silent	p.P425P	0.78		
TCGA-KN-8428-01	1	20067419	20067419	G	A	TMCO4	Missense_Mutation	p.P298L	0.81	deleterious(0)	probably_damaging(0.986)
TCGA-KN-8428-01	1	201029943	201029943	C	T	CACNA1S	Missense_Mutation	p.R1086H	0.38	deleterious(0)	probably_damaging(0.983)
TCGA-KN-8428-01	1	201060823	201060823	G	A	CACNA1S	Silent	p.I213I	0.33		
TCGA-KN-8428-01	1	205041226	205041226	C	T	CNTN2	Missense_Mutation	p.A899V	0.85	deleterious(0.05)	possibly_damaging(0.61)
TCGA-KN-8428-01	1	206905598	206905598	G	A	MAPKAPK2	Intron		0.29		
TCGA-KN-8428-01	1	208383788	208383788	T	C	PLXNA2	Missense_Mutation	p.N403S	0.08	tolerated(0.16)	benign(0.005)
TCGA-KN-8428-01	1	210577862	210577862	G	A	HHAT	Missense_Mutation	p.V176I	0.05	tolerated(0.12)	possibly_damaging(0.677)
TCGA-KN-8428-01	1	21329292	21329292	G	A	EIF4G3	5'UTR		0.80		
TCGA-KN-8428-01	1	21887145	21887145	C	T	ALPL	Nonsense_Mutation	p.R30*	0.37		
TCGA-KN-8428-01	1	227504801	227504801	A	G	CDC42BPA	Missense_Mutation	p.V28A	0.78	deleterious(0)	possibly_damaging(0.802)
TCGA-KN-8428-01	1	227921193	227921193	G	A	JMJD4	Silent	p.G294G	0.80		
TCGA-KN-8428-01	1	22902937	22902937	G	A	EPHA8	Silent	p.S129S	0.05		
TCGA-KN-8428-01	1	236762781	236762781	A	G	HEATR1	Splice_Site	p.X167_splice	0.29		
TCGA-KN-8428-01	1	244552383	244552383	G	A	C1orf100	3'UTR		0.43		
TCGA-KN-8428-01	1	247587215	247587215	G	A	NLRP3	Missense_Mutation	p.R157H	0.76	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	1	248031300	248031300	T	C	TRIM58	Missense_Mutation	p.I269T	0.43	tolerated(0.11)	benign(0.027)
TCGA-KN-8428-01	1	248366613	248366613	G	A	OR2M3	Missense_Mutation	p.A82T	0.78	tolerated(0.05)	benign(0.128)
TCGA-KN-8428-01	1	249211775	249211775	T	C	PGBD2	Missense_Mutation	p.V331A	0.18	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8428-01	1	26140634	26140634	G	A	SEPN1	Missense_Mutation	p.V523M	0.07	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	1	31899552	31899552	C	T	SERINC2	Missense_Mutation	p.A230V	0.65	tolerated(1)	benign(0.003)
TCGA-KN-8428-01	1	32087173	32087173	C	T	HCRTR1	Missense_Mutation	p.R240C	0.06	deleterious(0)	possibly_damaging(0.723)
TCGA-KN-8428-01	1	32667610	32667610	G	A	CCDC28B	Missense_Mutation	p.R25Q	0.25	tolerated(0.12)	possibly_damaging(0.668)
TCGA-KN-8428-01	1	3599709	3599709	G	A	TP73	Missense_Mutation	p.V51I	0.77	tolerated(0.21)	benign(0.021)
TCGA-KN-8428-01	1	36028957	36028957	G	A	NCDN	Missense_Mutation	p.V514M	0.06	tolerated(0.05)	possibly_damaging(0.809)
TCGA-KN-8428-01	1	36479606	36479606	G	A	AGO3	Missense_Mutation	p.A455T	0.19	deleterious(0.02)	benign(0.328)
TCGA-KN-8428-01	1	3807424	3807424	G	A	C1orf174	Silent	p.G109G	0.90		
TCGA-KN-8428-01	1	38227629	38227629	G	A	EPHA10	Missense_Mutation	p.R100C	0.55	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	1	38345781	38345781	G	A	INPP5B	Missense_Mutation	p.T506M	0.29	deleterious(0.01)	possibly_damaging(0.857)
TCGA-KN-8428-01	1	39951259	39951259	C	T	MACF1	Silent	p.A5362A	0.34		
TCGA-KN-8428-01	1	40125029	40125029	G	A	NT5C1A	Missense_Mutation	p.R291W	0.59	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	1	42047504	42047504	G	A	HIVEP3	Missense_Mutation	p.R989W	0.10		probably_damaging(0.999)
TCGA-KN-8428-01	1	42620453	42620453	G	A	GUCA2B	Missense_Mutation	p.A65T	0.84	tolerated(0.18)	benign(0.012)
TCGA-KN-8428-01	1	43896377	43896377	C	T	SZT2	Missense_Mutation	p.P1507L	0.08	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	1	44303969	44303969	G	A	ST3GAL3	Silent	p.T165T	0.28		
TCGA-KN-8428-01	1	46493480	46493480	C	T	MAST2	Missense_Mutation	p.T666M	0.27	deleterious_low_confidence(0)	probably_damaging(0.998)
TCGA-KN-8428-01	1	53580601	53580601	C	T	SLC1A7	Missense_Mutation	p.R87H	0.28	deleterious(0.01)	probably_damaging(0.996)
TCGA-KN-8428-01	1	57185885	57185885	C	T	C1orf168	Missense_Mutation	p.E698K	0.27	deleterious(0.02)	probably_damaging(0.97)
TCGA-KN-8428-01	1	5951002	5951002	C	T	NPHP4	Missense_Mutation	p.V744M	0.83	tolerated(0.13)	benign(0.01)
TCGA-KN-8428-01	1	61818215	61818215	C	T	NFIA	Missense_Mutation	p.S310F	0.83	deleterious(0)	possibly_damaging(0.847)
TCGA-KN-8428-01	1	62739646	62739646	A	T	KANK4	Missense_Mutation	p.I377N	0.83	deleterious(0.01)	benign(0.016)
TCGA-KN-8428-01	1	62979274	62979274	T	C	DOCK7	Missense_Mutation	p.K1344E	0.25	deleterious(0.02)	possibly_damaging(0.596)
TCGA-KN-8428-01	1	65146953	65146953	G	A	CACHD1	Missense_Mutation	p.R1089H	0.04	deleterious(0.01)	probably_damaging(0.962)
TCGA-KN-8428-01	1	6646763	6646763	G	A	ZBTB48	Silent	p.T351T	0.79		
TCGA-KN-8428-01	1	78428480	78428480	C	T	FUBP1	Missense_Mutation	p.R440Q	0.27	tolerated(0.09)	possibly_damaging(0.75)
TCGA-KN-8428-01	1	87181510	87181510	T	C	SH3GLB1	Missense_Mutation	p.I59T	0.04	deleterious(0)	possibly_damaging(0.786)
TCGA-KN-8428-01	1	91809065	91809065	A	G	HFM1	Silent	p.L753L	0.20		
TCGA-KN-8428-01	1	934923	934923	C	T	HES4	Missense_Mutation	p.R118H	0.64	tolerated(0.05)	benign(0.108)
TCGA-KN-8428-01	1	978746	978746	C	T	AGRN	Silent	p.S504S	0.85		
TCGA-KN-8428-01	1	985016	985016	C	T	AGRN	Missense_Mutation	p.R1529C	0.57	tolerated(0.1)	probably_damaging(0.953)
TCGA-KN-8428-01	20	16021924	16021924	G	A	MACROD2	Splice_Site	p.X411_splice	0.53		
TCGA-KN-8428-01	20	17922891	17922891	T	C	SNX5	3'UTR		0.06		
TCGA-KN-8428-01	20	18022295	18022295	G	A	OVOL2	Missense_Mutation	p.R132C	0.19	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	20	18287023	18287023	C	T	ZNF133	Missense_Mutation	p.P68L	0.13	tolerated(0.49)	benign(0.012)
TCGA-KN-8428-01	20	20475759	20475759	A	G	RALGAPA2	Splice_Site	p.X1789_splice	0.23		
TCGA-KN-8428-01	20	21376975	21376975	G	A	NKX2-4	Silent	p.Y213Y	0.11		
TCGA-KN-8428-01	20	23858242	23858242	A	G	CST5	Missense_Mutation	p.V82A	0.46	deleterious(0.03)	possibly_damaging(0.535)
TCGA-KN-8428-01	20	2442418	2442418	C	T	SNRPB	Missense_Mutation	p.R236H	0.29	tolerated_low_confidence(0.36)	unknown(0)
TCGA-KN-8428-01	20	24524119	24524119	C	T	SYNDIG1	Missense_Mutation	p.P129L	0.18	tolerated(0.09)	benign(0.178)
TCGA-KN-8428-01	20	2560637	2560637	C	T	TMC2	Nonsense_Mutation	p.R257*	0.42		
TCGA-KN-8428-01	20	30231238	30231238	G	A	COX4I2	Silent	p.A93A	0.16		
TCGA-KN-8428-01	20	30697520	30697520	A	-	TM9SF4	5'UTR		0.36		
TCGA-KN-8428-01	20	32232529	32232529	G	A	CBFA2T2	3'UTR		0.15		
TCGA-KN-8428-01	20	34050290	34050290	A	C	CEP250	Missense_Mutation	p.E33A	0.18		possibly_damaging(0.742)
TCGA-KN-8428-01	20	35467800	35467800	G	A	SOGA1	Silent	p.D244D	0.51		
TCGA-KN-8428-01	20	35521162	35521162	T	C	SAMHD1	3'UTR		0.22		
TCGA-KN-8428-01	20	37353701	37353701	G	A	SLC32A1	Missense_Mutation	p.D112N	0.49	tolerated(0.31)	benign(0.025)
TCGA-KN-8428-01	20	37529279	37529279	G	A	PPP1R16B	Missense_Mutation	p.E175K	0.50	deleterious(0)	probably_damaging(0.92)
TCGA-KN-8428-01	20	39801085	39801085	A	G	PLCG1	Missense_Mutation	p.Y977C	0.08	deleterious(0)	probably_damaging(0.992)
TCGA-KN-8428-01	20	398443	398443	A	T	RBCK1	Missense_Mutation	p.D110V	0.42	deleterious(0)	probably_damaging(0.988)
TCGA-KN-8428-01	20	39980542	39980542	C	T	LPIN3	Missense_Mutation	p.A395V	0.30	deleterious(0.01)	possibly_damaging(0.907)
TCGA-KN-8428-01	20	420958	420958	G	A	TBC1D20	Silent	p.H234H	0.48		
TCGA-KN-8428-01	20	43053101	43053101	G	A	HNF4A	Intron		0.62		
TCGA-KN-8428-01	20	44641958	44641958	G	A	MMP9	Silent	p.P465P	0.21		
TCGA-KN-8428-01	20	45355544	45355544	C	T	SLC2A10	Nonsense_Mutation	p.R444*	0.25		
TCGA-KN-8428-01	20	4680473	4680473	G	A	PRNP	Missense_Mutation	p.V203I	0.20	tolerated(0.58)	benign(0.002)
TCGA-KN-8428-01	20	48098552	48098552	G	A	KCNB1	Missense_Mutation	p.R156W	0.28	deleterious(0.01)	probably_damaging(0.957)
TCGA-KN-8428-01	20	48524979	48524979	G	A	SPATA2	Missense_Mutation	p.R17W	0.20	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	20	48744630	48744630	C	T	TMEM189-UBE2V1	Silent	p.T191T	0.51		
TCGA-KN-8428-01	20	49218734	49218734	C	T	FAM65C	Missense_Mutation	p.G508R	0.07	tolerated(0.22)	benign(0.024)
TCGA-KN-8428-01	20	52601913	52601913	G	A	BCAS1	Silent	p.S351S	0.23		
TCGA-KN-8428-01	20	52645320	52645320	C	T	BCAS1	Missense_Mutation	p.A112T	0.28	tolerated(1)	benign(0)
TCGA-KN-8428-01	20	55111249	55111249	C	T	FAM209B	Nonsense_Mutation	p.R91*	0.25		
TCGA-KN-8428-01	20	55803427	55803427	G	A	BMP7	Missense_Mutation	p.R157W	0.30	tolerated(0.11)	probably_damaging(0.984)
TCGA-KN-8428-01	20	56185305	56185305	G	A	ZBP1	Silent	p.D331D	0.45		
TCGA-KN-8428-01	20	56227600	56227600	C	T	PMEPA1	Missense_Mutation	p.A125T	0.73	tolerated(0.22)	benign(0.006)
TCGA-KN-8428-01	20	57769704	57769704	C	T	ZNF831	Silent	p.H1210H	0.25		
TCGA-KN-8428-01	20	5843951	5843951	C	T	C20orf196	Missense_Mutation	p.R154W	0.47	deleterious(0.01)	benign(0.015)
TCGA-KN-8428-01	20	60791451	60791451	G	A	HRH3	Missense_Mutation	p.P317S	0.56	tolerated(0.12)	benign(0.026)
TCGA-KN-8428-01	20	61429984	61429984	G	A	MRGBP	Missense_Mutation	p.V106I	0.29	tolerated(0.5)	probably_damaging(0.984)
TCGA-KN-8428-01	20	61916115	61916115	G	T	ARFGAP1	Intron		0.62		
TCGA-KN-8428-01	20	61981545	61981545	C	T	CHRNA4	Silent	p.P406P	0.33		
TCGA-KN-8428-01	20	62065203	62065203	C	T	KCNQ2	Silent	p.T359T	0.26		
TCGA-KN-8428-01	20	62187191	62187191	C	T	C20orf195	Missense_Mutation	p.H59Y	0.49	tolerated(0.16)	benign(0.006)
TCGA-KN-8428-01	20	62200925	62200925	G	A	HELZ2	Missense_Mutation	p.R222W	0.23	deleterious(0.01)	possibly_damaging(0.613)
TCGA-KN-8428-01	20	62370156	62370156	C	T	LIME1	Missense_Mutation	p.A264V	0.06	tolerated_low_confidence(0.29)	benign(0.009)
TCGA-KN-8428-01	20	62571654	62571654	G	A	UCKL1	Silent	p.H472H	0.27		
TCGA-KN-8428-01	20	62598240	62598240	G	A	ZNF512B	Missense_Mutation	p.R128W	0.12	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	20	826273	826273	C	T	FAM110A	Missense_Mutation	p.R276C	0.41	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	21	30307615	30307615	G	A	LTN1	Missense_Mutation	p.A1610V	0.07	deleterious(0)	possibly_damaging(0.79)
TCGA-KN-8428-01	21	35260567	35260567	T	C	ITSN1	Missense_Mutation	p.V1710A	0.12	tolerated(0.24)	benign(0.343)
TCGA-KN-8428-01	21	35821711	35821711	C	T	KCNE1	Silent	p.S74S	0.04		
TCGA-KN-8428-01	21	38604881	38604881	G	A	DSCR3	Intron		0.62		
TCGA-KN-8428-01	21	41151173	41151173	G	A	IGSF5	Missense_Mutation	p.R292H	0.81	tolerated(0.57)	benign(0.049)
TCGA-KN-8428-01	21	46226842	46226842	C	T	SUMO3	3'UTR		0.50		
TCGA-KN-8428-01	22	17072519	17072519	C	T	CCT8L2	Missense_Mutation	p.D308N	0.41	tolerated(0.46)	benign(0.103)
TCGA-KN-8428-01	22	18028335	18028335	T	C	CECR2	Missense_Mutation	p.Y1099H	0.14	deleterious_low_confidence(0)	probably_damaging(0.999)
TCGA-KN-8428-01	22	18912624	18912624	C	T	PRODH	Missense_Mutation	p.A203T	0.40	tolerated(0.3)	benign(0.125)
TCGA-KN-8428-01	22	19707904	19707904	G	A	SEPT5	Missense_Mutation	p.G142S	0.16	tolerated(0.05)	probably_damaging(1)
TCGA-KN-8428-01	22	19839716	19839716	G	A	C22orf29	Silent	p.N23N	0.20		
TCGA-KN-8428-01	22	20456769	20456769	G	A	RIMBP3	Silent	p.P1511P	0.25		
TCGA-KN-8428-01	22	23115016	23115016	C	T	IGLV3-12	Silent	p.I96I	0.25		
TCGA-KN-8428-01	22	23230424	23230424	G	A	IGLL5	Missense_Mutation	p.R64Q	0.27	tolerated_low_confidence(0.35)	benign(0.004)
TCGA-KN-8428-01	22	23248734	23248734	C	T	IGLC3	Missense_Mutation	p.T75M	0.21		benign(0.235)
TCGA-KN-8428-01	22	23438268	23438268	G	A	GNAZ	Missense_Mutation	p.R129Q	0.31	tolerated(0.15)	benign(0.041)
TCGA-KN-8428-01	22	24176351	24176351	C	T	SMARCB1	Missense_Mutation	p.T381M	0.23	deleterious(0.03)	probably_damaging(0.978)
TCGA-KN-8428-01	22	24836835	24836835	G	A	ADORA2A	Missense_Mutation	p.R206Q	0.16	tolerated(0.08)	benign(0.052)
TCGA-KN-8428-01	22	24837116	24837116	C	T	ADORA2A	Missense_Mutation	p.R300C	0.40	deleterious(0.04)	benign(0.402)
TCGA-KN-8428-01	22	26422449	26422449	C	T	MYO18B	Missense_Mutation	p.S2170L	0.43	tolerated(0.32)	benign(0.031)
TCGA-KN-8428-01	22	26688611	26688611	G	A	SEZ6L	Missense_Mutation	p.A112T	0.31	tolerated_low_confidence(1)	benign(0.002)
TCGA-KN-8428-01	22	29091740	29091740	C	T	CHEK2	Missense_Mutation	p.R449H	0.52	deleterious(0.02)	possibly_damaging(0.841)
TCGA-KN-8428-01	22	30951743	30951743	C	T	GAL3ST1	Missense_Mutation	p.A157T	0.52	tolerated(0.48)	benign(0.084)
TCGA-KN-8428-01	22	31328607	31328607	C	T	MORC2	Missense_Mutation	p.C829Y	0.47	deleterious_low_confidence(0.03)	possibly_damaging(0.642)
TCGA-KN-8428-01	22	31843508	31843508	G	A	EIF4ENIF1	Missense_Mutation	p.A631V	0.39	tolerated(0.13)	benign(0.008)
TCGA-KN-8428-01	22	31851930	31851930	C	T	EIF4ENIF1	Missense_Mutation	p.R336Q	0.14	deleterious(0)	probably_damaging(0.994)
TCGA-KN-8428-01	22	32019743	32019743	G	A	PISD	Missense_Mutation	p.T49I	0.05	deleterious_low_confidence(0.02)	benign(0.232)
TCGA-KN-8428-01	22	36334942	36334942	C	T	RBFOX2	Missense_Mutation	p.E64K	0.14		benign(0.011)
TCGA-KN-8428-01	22	37464712	37464712	G	A	TMPRSS6	Intron		0.34		
TCGA-KN-8428-01	22	38061706	38061706	T	C	PDXP	Missense_Mutation	p.L240P	0.13	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8428-01	22	38153951	38153951	C	T	TRIOBP	Missense_Mutation	p.R2007C	0.40	deleterious(0.01)	probably_damaging(0.997)
TCGA-KN-8428-01	22	38522429	38522429	C	T	PLA2G6	Missense_Mutation	p.R459Q	0.39	tolerated(0.66)	possibly_damaging(0.545)
TCGA-KN-8428-01	22	38536030	38536030	G	A	PLA2G6	Silent	p.N252N	0.17		
TCGA-KN-8428-01	22	38875685	38875685	C	T	KDELR3	Missense_Mutation	p.R94C	0.22	deleterious(0.02)	benign(0.278)
TCGA-KN-8428-01	22	40717184	40717184	C	T	TNRC6B	Nonsense_Mutation	p.R1689*	0.14		
TCGA-KN-8428-01	22	42341239	42341239	G	A	CENPM	Silent	p.L100L	0.19		
TCGA-KN-8428-01	22	42475891	42475891	G	T	SMDT1	Missense_Mutation	p.R40L	0.35	tolerated(0.16)	benign(0.013)
TCGA-KN-8428-01	22	42475902	42475902	C	A	SMDT1	Missense_Mutation	p.P44T	0.36	deleterious(0.02)	probably_damaging(0.928)
TCGA-KN-8428-01	22	42525053	42525053	C	T	CYP2D6	Missense_Mutation	p.A163T	0.19	deleterious(0.02)	benign(0.221)
TCGA-KN-8428-01	22	42607545	42607545	C	T	TCF20	Missense_Mutation	p.R1256H	0.16		probably_damaging(0.999)
TCGA-KN-8428-01	22	43236982	43236982	G	A	ARFGAP3	Nonsense_Mutation	p.R77*	0.35		
TCGA-KN-8428-01	22	43558971	43558971	C	T	TSPO	Missense_Mutation	p.R162C	0.22	deleterious(0)	possibly_damaging(0.614)
TCGA-KN-8428-01	22	44464993	44464993	G	A	PARVB	Intron		0.18		
TCGA-KN-8428-01	22	46806300	46806300	C	T	CELSR1	Missense_Mutation	p.R1643Q	0.25	tolerated(0.59)	benign(0.138)
TCGA-KN-8428-01	22	47189694	47189694	G	A	TBC1D22A	Missense_Mutation	p.R139Q	0.19	deleterious(0.03)	benign(0.027)
TCGA-KN-8428-01	22	50018190	50018190	C	T	C22orf34	Missense_Mutation	p.A92T	0.43	tolerated_low_confidence(1)	benign(0)
TCGA-KN-8428-01	22	50664592	50664592	C	T	TUBGCP6	Missense_Mutation	p.V574M	0.12	deleterious(0.05)	benign(0.176)
TCGA-KN-8428-01	22	50720400	50720400	G	A	PLXNB2	Silent	p.D1076D	0.41		
TCGA-KN-8428-01	22	51064679	51064679	G	A	ARSA	Silent	p.G294G	0.10		
TCGA-KN-8428-01	2	100210166	100210166	G	A	AFF3	Missense_Mutation	p.R678W	0.83	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	2	102789203	102789203	C	T	IL1R1	Missense_Mutation	p.S299L	0.08	tolerated(0.08)	benign(0.177)
TCGA-KN-8428-01	2	110849317	110849317	C	A	MALL	Missense_Mutation	p.A46S	0.34	deleterious(0.01)	probably_damaging(1)
TCGA-KN-8428-01	2	111416221	111416221	A	G	BUB1	Missense_Mutation	p.S459P	0.06	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	2	114356033	114356033	G	A	WASH2P	RNA		0.04		
TCGA-KN-8428-01	2	120438454	120438454	G	A	TMEM177	Missense_Mutation	p.A9T	0.65	tolerated(0.44)	benign(0.009)
TCGA-KN-8428-01	2	127810999	127810999	T	C	BIN1	Missense_Mutation	p.E421G	0.46	deleterious(0.01)	benign(0.223)
TCGA-KN-8428-01	2	165578972	165578972	A	-	COBLL1	Frame_Shift_Del	p.F241Sfs*22	0.36		
TCGA-KN-8428-01	2	168100185	168100185	C	T	XIRP2	Silent	p.D761D	0.68		
TCGA-KN-8428-01	2	172182369	172182369	C	G	METTL8	Missense_Mutation	p.A339P	0.68	deleterious(0)	possibly_damaging(0.815)
TCGA-KN-8428-01	2	179460285	179460285	T	C	TTN	Missense_Mutation	p.M19266V	0.53		
TCGA-KN-8428-01	2	179578856	179578856	C	T	TTN	Silent	p.T8843T	0.71		
TCGA-KN-8428-01	2	18745215	18745215	G	A	NT5C1B	Silent	p.D560D	0.38		
TCGA-KN-8428-01	2	191848415	191848415	C	T	STAT1	Missense_Mutation	p.G467S	0.20	deleterious(0.01)	possibly_damaging(0.751)
TCGA-KN-8428-01	2	198353083	198353083	C	T	HSPD1	Missense_Mutation	p.A450T	0.61	tolerated(0.1)	benign(0.125)
TCGA-KN-8428-01	2	204002940	204002940	A	G	NBEAL1	Missense_Mutation	p.N1512D	0.09	tolerated(0.67)	benign(0.044)
TCGA-KN-8428-01	2	20871061	20871061	C	T	GDF7	Missense_Mutation	p.A410V	0.05	deleterious(0)	probably_damaging(0.984)
TCGA-KN-8428-01	2	209214769	209214769	C	T	PIKFYVE	Missense_Mutation	p.T1799I	0.60	tolerated(0.2)	benign(0.035)
TCGA-KN-8428-01	2	210808138	210808138	G	A	UNC80	Missense_Mutation	p.R2251H	0.56		probably_damaging(0.995)
TCGA-KN-8428-01	2	220379312	220379312	C	A	ASIC4	Missense_Mutation	p.P83T	0.40	deleterious_low_confidence(0)	possibly_damaging(0.641)
TCGA-KN-8428-01	2	220435086	220435086	C	T	OBSL1	Missense_Mutation	p.R290H	0.74	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	2	225684245	225684245	C	T	DOCK10	Missense_Mutation	p.R1062H	0.06	deleterious(0)	benign(0.315)
TCGA-KN-8428-01	2	230127481	230127481	G	A	PID1	Missense_Mutation	p.S14L	0.46		unknown(0)
TCGA-KN-8428-01	2	232458786	232458786	C	T	C2orf57	Missense_Mutation	p.A375V	0.61	deleterious(0.01)	possibly_damaging(0.866)
TCGA-KN-8428-01	2	237490947	237490947	T	C	ACKR3	3'UTR		0.14		
TCGA-KN-8428-01	2	239079272	239079272	G	A	ILKAP	Missense_Mutation	p.R362C	0.12	deleterious(0)	probably_damaging(0.973)
TCGA-KN-8428-01	2	240016570	240016570	G	A	HDAC4	Intron		0.17		
TCGA-KN-8428-01	2	25799755	25799755	G	A	DTNB	Silent	p.A276A	0.25		
TCGA-KN-8428-01	2	27802448	27802448	G	A	C2orf16	Silent	p.T1003T	0.36		
TCGA-KN-8428-01	2	31484520	31484520	C	T	EHD3	Missense_Mutation	p.R341W	0.71	deleterious(0)	benign(0.339)
TCGA-KN-8428-01	2	32713733	32713733	A	G	BIRC6	Missense_Mutation	p.I2683V	0.17		benign(0)
TCGA-KN-8428-01	2	42720408	42720408	G	A	KCNG3	Silent	p.R78R	0.39		
TCGA-KN-8428-01	2	42990143	42990143	G	A	OXER1	Missense_Mutation	p.R393C	0.77	tolerated(0.06)	benign(0.348)
TCGA-KN-8428-01	2	42990181	42990181	A	G	OXER1	Missense_Mutation	p.V380A	0.28	tolerated(1)	benign(0)
TCGA-KN-8428-01	2	43458026	43458026	C	T	THADA	3'UTR		0.87		
TCGA-KN-8428-01	2	44428691	44428691	G	A	PPM1B	Missense_Mutation	p.R118H	0.42	tolerated(0.1)	probably_damaging(0.978)
TCGA-KN-8428-01	2	55408743	55408743	G	A	CLHC1	Missense_Mutation	p.R382W	0.32	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	2	67637129	67637129	C	T	ETAA1	Nonsense_Mutation	p.R914*	0.80		
TCGA-KN-8428-01	2	71887760	71887760	C	T	DYSF	Missense_Mutation	p.T1661M	0.40	deleterious(0)	possibly_damaging(0.828)
TCGA-KN-8428-01	2	73520376	73520376	C	T	EGR4	Missense_Mutation	p.E127K	0.41	tolerated_low_confidence(0.2)	benign(0.412)
TCGA-KN-8428-01	2	74327959	74327959	C	T	TET3	Silent	p.D1213D	0.32		
TCGA-KN-8428-01	2	85533623	85533623	C	T	TCF7L1	Missense_Mutation	p.R400W	0.29	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	2	86315989	86315989	T	G	POLR1A	Missense_Mutation	p.K182T	0.30	deleterious(0)	probably_damaging(0.933)
TCGA-KN-8428-01	2	88751602	88751602	C	T	FOXI3	RNA		0.76		
TCGA-KN-8428-01	2	99860551	99860551	T	C	LYG2	Missense_Mutation	p.H144R	0.09	deleterious(0.03)	probably_damaging(1)
TCGA-KN-8428-01	3	10960101	10960101	C	T	SLC6A11	Silent	p.Y361Y	0.12		
TCGA-KN-8428-01	3	113667583	113667583	T	A	ZDHHC23	Intron		0.33		
TCGA-KN-8428-01	3	122420029	122420029	C	T	PARP14	Silent	p.H876H	0.47		
TCGA-KN-8428-01	3	123689003	123689003	G	A	ROPN1	Missense_Mutation	p.S153L	0.41	deleterious(0)	benign(0.001)
TCGA-KN-8428-01	3	123946899	123946899	G	T	KALRN	Missense_Mutation	p.A44S	0.38	deleterious(0)	probably_damaging(0.972)
TCGA-KN-8428-01	3	124237311	124237311	G	A	KALRN	3'UTR		0.22		
TCGA-KN-8428-01	3	124515406	124515406	C	T	ITGB5	Missense_Mutation	p.V508M	0.49	tolerated(0.22)	benign(0.007)
TCGA-KN-8428-01	3	125725593	125725593	C	T	SLC41A3	Intron		0.60		
TCGA-KN-8428-01	3	126723819	126723819	C	T	PLXNA1	Missense_Mutation	p.R571C	0.19	tolerated(0.07)	benign(0.002)
TCGA-KN-8428-01	3	127339608	127339608	C	T	MCM2	Missense_Mutation	p.A778V	0.51	deleterious(0.02)	possibly_damaging(0.595)
TCGA-KN-8428-01	3	12858741	12858741	G	A	CAND2	Silent	p.P770P	0.22		
TCGA-KN-8428-01	3	129233374	129233374	G	A	IFT122	Missense_Mutation	p.A1095T	0.49	tolerated(0.13)	possibly_damaging(0.59)
TCGA-KN-8428-01	3	132172979	132172979	C	T	DNAJC13	Missense_Mutation	p.R304W	0.03	deleterious(0)	probably_damaging(0.949)
TCGA-KN-8428-01	3	132221145	132221145	G	A	DNAJC13	Missense_Mutation	p.V1517I	0.41	deleterious(0.03)	benign(0.004)
TCGA-KN-8428-01	3	133553468	133553468	C	T	RAB6B	Silent	p.A171A	0.21		
TCGA-KN-8428-01	3	142272665	142272665	A	G	ATR	Splice_Site	p.X844_splice	0.20		
TCGA-KN-8428-01	3	143691481	143691481	G	C	C3orf58	Missense_Mutation	p.G103R	0.26	tolerated(0.33)	benign(0.002)
TCGA-KN-8428-01	3	14724594	14724594	G	A	C3orf20	Missense_Mutation	p.R125H	0.41	tolerated(0.61)	benign(0.003)
TCGA-KN-8428-01	3	149093475	149093475	G	A	TM4SF1	Nonsense_Mutation	p.R87*	0.45		
TCGA-KN-8428-01	3	184038753	184038753	G	A	EIF4G1	Silent	p.T230T	0.78		
TCGA-KN-8428-01	3	184073265	184073265	C	T	CLCN2	Missense_Mutation	p.R408H	0.32	deleterious(0.01)	benign(0.02)
TCGA-KN-8428-01	3	185993360	185993360	G	A	DGKG	Missense_Mutation	p.R296C	0.70	deleterious(0.04)	probably_damaging(0.971)
TCGA-KN-8428-01	3	189526150	189526150	C	T	TP63	Silent	p.H138H	0.48		
TCGA-KN-8428-01	3	194149621	194149621	T	C	ATP13A3	Missense_Mutation	p.Q967R	0.38	deleterious(0.03)	benign(0.234)
TCGA-KN-8428-01	3	196792176	196792176	C	T	DLG1	Missense_Mutation	p.V815I	0.82	tolerated(0.35)	benign(0.235)
TCGA-KN-8428-01	3	19921161	19921161	G	A	EFHB	Missense_Mutation	p.R822W	0.12	deleterious(0)	benign(0.339)
TCGA-KN-8428-01	3	27233594	27233594	G	A	NEK10	Missense_Mutation	p.R811C	0.17	deleterious(0)	probably_damaging(0.926)
TCGA-KN-8428-01	3	30769804	30769804	C	T	GADL1	Missense_Mutation	p.S499N	0.19	tolerated(1)	benign(0.007)
TCGA-KN-8428-01	3	31617961	31617961	G	A	STT3B	Missense_Mutation	p.A130T	0.41	tolerated(0.58)	probably_damaging(1)
TCGA-KN-8428-01	3	36759593	36759593	C	T	DCLK3	Missense_Mutation	p.R554H	0.17	deleterious(0)	possibly_damaging(0.738)
TCGA-KN-8428-01	3	38316965	38316965	C	T	SLC22A13	Missense_Mutation	p.P304L	0.23	deleterious(0.04)	benign(0.117)
TCGA-KN-8428-01	3	40573994	40573994	C	T	ZNF621	Missense_Mutation	p.R245C	0.51	tolerated(0.1)	benign(0.012)
TCGA-KN-8428-01	3	41266964	41266964	G	A	CTNNB1	Missense_Mutation	p.R212H	0.45	deleterious(0)	benign(0.097)
TCGA-KN-8428-01	3	42438726	42438726	C	T	LYZL4	3'UTR		0.29		
TCGA-KN-8428-01	3	43074842	43074842	G	A	FAM198A	Missense_Mutation	p.G363S	0.39	deleterious(0.03)	probably_damaging(0.931)
TCGA-KN-8428-01	3	44684294	44684294	C	T	ZNF197	Nonsense_Mutation	p.R558*	0.22		
TCGA-KN-8428-01	3	48462160	48462160	G	A	PLXNB1	Missense_Mutation	p.R648C	0.21	tolerated(0.19)	benign(0.386)
TCGA-KN-8428-01	3	48626075	48626075	G	A	COL7A1	Missense_Mutation	p.P863S	0.22		unknown(0)
TCGA-KN-8428-01	3	49059935	49059935	C	A	NDUFAF3	Silent	p.P78P	0.41		
TCGA-KN-8428-01	3	49694040	49694040	C	T	BSN	Missense_Mutation	p.R2351W	0.33		unknown(0)
TCGA-KN-8428-01	3	49940431	49940431	G	A	MST1R	Silent	p.D204D	0.43		
TCGA-KN-8428-01	3	50005642	50005642	C	T	RBM6	Nonsense_Mutation	p.R262*	0.40		
TCGA-KN-8428-01	3	51315164	51315164	G	A	DOCK3	Silent	p.P934P	0.05		
TCGA-KN-8428-01	3	52003379	52003379	G	A	ABHD14B	3'UTR		0.43		
TCGA-KN-8428-01	3	52420183	52420183	C	T	DNAH1	Missense_Mutation	p.T2878M	0.11		probably_damaging(0.982)
TCGA-KN-8428-01	3	52552013	52552013	C	T	STAB1	Silent	p.V1585V	0.40		
TCGA-KN-8428-01	3	53757945	53757945	C	T	CACNA1D	Silent	p.G693G	0.44		
TCGA-KN-8428-01	3	63981293	63981293	G	A	ATXN7	Missense_Mutation	p.V599I	0.40	tolerated(0.43)	benign(0.043)
TCGA-KN-8428-01	3	71804265	71804265	C	T	GPR27	Silent	p.C355C	0.48		
TCGA-KN-8428-01	3	73096446	73096446	G	A	PPP4R2	Missense_Mutation	p.E76K	0.44	deleterious(0.03)	benign(0.131)
TCGA-KN-8428-01	3	78666912	78666912	G	A	ROBO1	Silent	p.S1385S	0.42		
TCGA-KN-8428-01	3	88105046	88105046	G	A	CGGBP1	Silent	p.V27V	0.53		
TCGA-KN-8428-01	3	89498501	89498501	T	C	EPHA3	Missense_Mutation	p.Y825H	0.41	deleterious(0)	probably_damaging(0.984)
TCGA-KN-8428-01	3	97607247	97607247	G	A	CRYBG3	Missense_Mutation	p.G503E	0.17	tolerated(0.15)	benign(0.096)
TCGA-KN-8428-01	3	9847982	9847982	C	T	ARPC4	3'UTR		0.46		
TCGA-KN-8428-01	3	9918797	9918797	C	T	CIDEC	Missense_Mutation	p.V54M	0.36	tolerated(0.09)	benign(0.107)
TCGA-KN-8428-01	4	100789507	100789507	G	A	DAPP1	3'UTR		0.33		
TCGA-KN-8428-01	4	11401504	11401504	G	A	HS3ST1	Silent	p.R42R	0.25		
TCGA-KN-8428-01	4	119951253	119951253	C	T	SYNPO2	Silent	p.S441S	0.33		
TCGA-KN-8428-01	4	1244351	1244351	G	A	CTBP1	5'Flank		0.42		
TCGA-KN-8428-01	4	126389786	126389786	A	G	FAT4	Missense_Mutation	p.S4007G	0.05		benign(0)
TCGA-KN-8428-01	4	129043474	129043474	A	G	LARP1B	Intron		0.12		
TCGA-KN-8428-01	4	13592029	13592029	G	A	BOD1L1	Silent	p.S2730S	0.13		
TCGA-KN-8428-01	4	1377724	1377724	G	A	UVSSA	Missense_Mutation	p.A678T	0.27	tolerated(0.08)	benign(0.102)
TCGA-KN-8428-01	4	141481158	141481158	T	C	UCP1	Silent	p.V272V	0.12		
TCGA-KN-8428-01	4	155254036	155254036	C	T	DCHS2	Silent	p.A609A	0.54		
TCGA-KN-8428-01	4	155254288	155254288	G	A	DCHS2	Silent	p.G525G	0.32		
TCGA-KN-8428-01	4	155487066	155487066	G	A	FGB	Missense_Mutation	p.R74H	0.33	deleterious(0)	probably_damaging(0.988)
TCGA-KN-8428-01	4	155487081	155487081	C	T	FGB	Missense_Mutation	p.A79V	0.24	tolerated(0.4)	benign(0)
TCGA-KN-8428-01	4	159076877	159076877	C	T	FAM198B	Silent	p.Q345Q	0.36		
TCGA-KN-8428-01	4	174169387	174169387	G	A	GALNT7	Missense_Mutation	p.R128H	0.30	deleterious(0.04)	benign(0.008)
TCGA-KN-8428-01	4	174254650	174254650	C	T	HMGB2	Splice_Site	p.X50_splice	0.48		
TCGA-KN-8428-01	4	1746487	1746487	G	A	TACC3	Silent	p.A793A	0.12		
TCGA-KN-8428-01	4	186185677	186185677	C	T	SNX25	Missense_Mutation	p.R109W	0.27	deleterious(0)	possibly_damaging(0.67)
TCGA-KN-8428-01	4	187209727	187209727	G	A	F11	Missense_Mutation	p.E613K	0.05	tolerated(0.31)	benign(0.048)
TCGA-KN-8428-01	4	187629557	187629557	G	A	FAT1	Silent	p.N475N	0.41		
TCGA-KN-8428-01	4	20533609	20533609	G	A	SLIT2	Missense_Mutation	p.R539H	0.26	tolerated(0.06)	probably_damaging(0.988)
TCGA-KN-8428-01	4	26483646	26483646	A	C	CCKAR	Missense_Mutation	p.S301A	0.07	tolerated(0.15)	benign(0.047)
TCGA-KN-8428-01	4	2950032	2950032	G	A	NOP14	Silent	p.L462L	0.22		
TCGA-KN-8428-01	4	3107131	3107131	G	A	HTT	Silent	p.E192E	0.32		
TCGA-KN-8428-01	4	3514583	3514583	C	T	LRPAP1	3'UTR		0.33		
TCGA-KN-8428-01	4	37962188	37962188	C	T	PTTG2	Missense_Mutation	p.R45C	0.51	tolerated(0.19)	benign(0.005)
TCGA-KN-8428-01	4	4322722	4322722	C	T	ZBTB49	Silent	p.I659I	0.29		
TCGA-KN-8428-01	4	57189672	57189672	C	T	KIAA1211	Missense_Mutation	p.T1106M	0.26	deleterious(0)	possibly_damaging(0.897)
TCGA-KN-8428-01	4	57267640	57267640	G	A	PPAT	Missense_Mutation	p.R248C	0.06	deleterious(0.05)	benign(0.016)
TCGA-KN-8428-01	4	77691990	77691990	G	A	SHROOM3	Missense_Mutation	p.R1854H	0.58	deleterious(0)	probably_damaging(0.988)
TCGA-KN-8428-01	4	79236854	79236854	C	T	FRAS1	Silent	p.G595G	0.40		
TCGA-KN-8428-01	4	82366931	82366931	C	T	RASGEF1B	Missense_Mutation	p.R264H	0.24	deleterious(0.01)	benign(0.428)
TCGA-KN-8428-01	4	83557759	83557759	C	T	SCD5	Missense_Mutation	p.A263T	0.26	tolerated(0.36)	benign(0.002)
TCGA-KN-8428-01	4	83581858	83581858	G	A	SCD5	Intron		0.36		
TCGA-KN-8428-01	4	843956	843956	C	T	GAK	Intron		0.24		
TCGA-KN-8428-01	4	8607769	8607769	C	T	CPZ	Missense_Mutation	p.R255W	0.21	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	4	86921956	86921956	C	T	ARHGAP24	3'UTR		0.15		
TCGA-KN-8428-01	4	87728796	87728796	T	C	PTPN13	Missense_Mutation	p.F2282L	0.07	tolerated(0.19)	possibly_damaging(0.827)
TCGA-KN-8428-01	4	9557805	9557805	C	T	MIR548I2	RNA		0.15		
TCGA-KN-8428-01	4	983647	983647	C	T	SLC26A1	Silent	p.A360A	0.28		
TCGA-KN-8428-01	5	101834578	101834578	G	A	SLCO6A1	5'UTR		0.21		
TCGA-KN-8428-01	5	102895830	102895830	A	G	NUDT12	Silent	p.N40N	0.04		
TCGA-KN-8428-01	5	108714549	108714549	A	G	PJA2	Silent	p.T213T	0.58		
TCGA-KN-8428-01	5	112902857	112902857	G	A	YTHDC2	Missense_Mutation	p.V971I	0.52	tolerated(0.13)	benign(0.243)
TCGA-KN-8428-01	5	114607065	114607065	G	A	CCDC112	Missense_Mutation	p.R393C	0.21	deleterious(0)	benign(0.173)
TCGA-KN-8428-01	5	118500256	118500256	T	C	DMXL1	Missense_Mutation	p.L1586P	0.04	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	5	121188112	121188112	G	A	FTMT	Missense_Mutation	p.D152N	0.52	tolerated(0.15)	benign(0.006)
TCGA-KN-8428-01	5	133984638	133984638	C	-	SEC24A	5'UTR		0.43		
TCGA-KN-8428-01	5	138287496	138287496	G	A	SIL1	Missense_Mutation	p.P282L	0.62	deleterious(0)	possibly_damaging(0.755)
TCGA-KN-8428-01	5	139251392	139251392	G	T	NRG2	Silent	p.A342A	0.18		
TCGA-KN-8428-01	5	139815782	139815782	G	A	ANKHD1	Missense_Mutation	p.D134N	0.60		unknown(0)
TCGA-KN-8428-01	5	140053740	140053740	C	T	HARS	3'UTR		0.28		
TCGA-KN-8428-01	5	140222343	140222343	G	A	PCDHA8	Silent	p.A479A	0.59		
TCGA-KN-8428-01	5	140229541	140229541	C	T	PCDHA9	Silent	p.N487N	0.06		
TCGA-KN-8428-01	5	140250128	140250128	C	T	PCDHA11	Silent	p.D480D	0.06		
TCGA-KN-8428-01	5	140735119	140735119	C	T	PCDHGA4	Missense_Mutation	p.R118W	0.54	deleterious_low_confidence(0)	possibly_damaging(0.586)
TCGA-KN-8428-01	5	140740942	140740942	G	A	PCDHGB2	Missense_Mutation	p.E414K	0.19	tolerated(0.33)	benign(0.023)
TCGA-KN-8428-01	5	140750096	140750096	G	A	PCDHGB3	Silent	p.S45S	0.05		
TCGA-KN-8428-01	5	141233894	141233894	G	A	PCDH1	Missense_Mutation	p.R1143C	0.56	deleterious(0)	probably_damaging(0.911)
TCGA-KN-8428-01	5	142661564	142661564	C	T	NR3C1	Missense_Mutation	p.D743N	0.29	tolerated(1)	benign(0.049)
TCGA-KN-8428-01	5	145428792	145428792	G	A	SH3RF2	Missense_Mutation	p.V436I	0.07	deleterious(0.02)	benign(0.426)
TCGA-KN-8428-01	5	149404017	149404017	G	A	HMGXB3	Missense_Mutation	p.E412K	0.20	tolerated(0.32)	benign(0.293)
TCGA-KN-8428-01	5	153795447	153795447	C	T	GALNT10	Silent	p.Y536Y	0.24		
TCGA-KN-8428-01	5	160047389	160047389	G	A	ATP10B	Missense_Mutation	p.S794L	0.30	deleterious(0)	possibly_damaging(0.61)
TCGA-KN-8428-01	5	161531032	161531032	G	A	GABRG2	Missense_Mutation	p.G297R	0.58	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8428-01	5	168096804	168096804	G	A	SLIT3	Silent	p.G1440G	0.53		
TCGA-KN-8428-01	5	169931585	169931585	C	T	KCNIP1	Silent	p.A3A	0.67		
TCGA-KN-8428-01	5	177679589	177679589	C	T	COL23A1	Missense_Mutation	p.G324R	0.20	tolerated(0.18)	probably_damaging(0.998)
TCGA-KN-8428-01	5	178454554	178454554	G	A	ZNF879	Silent	p.L38L	0.25		
TCGA-KN-8428-01	5	179192794	179192794	G	A	MAML1	Silent	p.S261S	0.26		
TCGA-KN-8428-01	5	180017682	180017682	T	C	SCGB3A1	Missense_Mutation	p.H70R	0.08	tolerated(0.24)	benign(0.402)
TCGA-KN-8428-01	5	180052908	180052908	C	T	FLT4	Missense_Mutation	p.R461Q	0.52	tolerated(0.54)	probably_damaging(0.989)
TCGA-KN-8428-01	5	19839219	19839219	C	T	CDH18	5'UTR		0.53		
TCGA-KN-8428-01	5	34821933	34821933	A	G	RAI14	Missense_Mutation	p.K367R	0.29	deleterious(0.03)	probably_damaging(0.999)
TCGA-KN-8428-01	5	37000622	37000622	C	T	NIPBL	Missense_Mutation	p.P1151L	0.45	tolerated(0.12)	benign(0.308)
TCGA-KN-8428-01	5	37036493	37036493	G	A	NIPBL	Missense_Mutation	p.E1959K	0.13	tolerated(0.38)	possibly_damaging(0.52)
TCGA-KN-8428-01	5	38510729	38510729	T	C	LIFR	Silent	p.K276K	0.08		
TCGA-KN-8428-01	5	39377146	39377146	G	T	DAB2	Silent	p.P581P	0.06		
TCGA-KN-8428-01	5	40681716	40681716	C	T	PTGER4	Silent	p.C207C	0.31		
TCGA-KN-8428-01	5	43613077	43613077	A	G	NNT	Silent	p.A73A	0.24		
TCGA-KN-8428-01	5	442635	442635	C	T	C5orf55	Silent	p.A101A	0.33		
TCGA-KN-8428-01	5	44811198	44811198	G	A	MRPS30	Missense_Mutation	p.R230Q	0.04	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8428-01	5	44812095	44812095	C	T	MRPS30	Missense_Mutation	p.R276W	0.15	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8428-01	5	5239898	5239898	T	C	ADAMTS16	Missense_Mutation	p.Y795H	0.08	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	5	67522808	67522808	C	T	PIK3R1	Missense_Mutation	p.S102L	0.21	tolerated(0.38)	benign(0)
TCGA-KN-8428-01	5	68473523	68473523	T	C	CCNB1	3'UTR		0.06		
TCGA-KN-8428-01	5	76645327	76645327	C	T	PDE8B	Silent	p.S320S	0.22		
TCGA-KN-8428-01	5	80640001	80640001	G	A	ACOT12	Missense_Mutation	p.R320C	0.22	deleterious(0)	possibly_damaging(0.901)
TCGA-KN-8428-01	5	82499423	82499423	C	T	XRCC4	Missense_Mutation	p.R179W	0.22	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	5	87494939	87494939	G	A	TMEM161B	Nonsense_Mutation	p.R315*	0.32		
TCGA-KN-8428-01	6	106553250	106553250	G	A	PRDM1	Silent	p.S405S	0.81		
TCGA-KN-8428-01	6	107000090	107000090	A	G	AIM1	Missense_Mutation	p.Q1416R	0.24	tolerated(0.06)	possibly_damaging(0.755)
TCGA-KN-8428-01	6	109766433	109766433	C	T	MICAL1	Missense_Mutation	p.V950M	0.85	tolerated(0.13)	benign(0.017)
TCGA-KN-8428-01	6	109769510	109769510	G	A	MICAL1	Missense_Mutation	p.P584L	0.46	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8428-01	6	126210643	126210643	G	A	NCOA7	Silent	p.A481A	0.29		
TCGA-KN-8428-01	6	13321234	13321234	C	T	TBC1D7	Missense_Mutation	p.R96H	0.45	deleterious(0.03)	benign(0.018)
TCGA-KN-8428-01	6	138655393	138655393	G	A	KIAA1244	Missense_Mutation	p.A1804T	0.61	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	6	147527114	147527114	G	A	STXBP5	Missense_Mutation	p.R53H	0.61	deleterious(0)	benign(0.241)
TCGA-KN-8428-01	6	155450720	155450720	C	T	TIAM2	Silent	p.H121H	0.50		
TCGA-KN-8428-01	6	155764489	155764489	G	A	NOX3	Missense_Mutation	p.A135V	0.47	tolerated(0.28)	benign(0.086)
TCGA-KN-8428-01	6	160874485	160874486	-	A	SLC22A3	3'Flank		0.31		
TCGA-KN-8428-01	6	162206903	162206903	C	T	PARK2	Missense_Mutation	p.V258M	0.52	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8428-01	6	26045706	26045706	C	T	HIST1H3C	Missense_Mutation	p.T23I	0.55	deleterious_low_confidence(0.02)	benign(0)
TCGA-KN-8428-01	6	26108074	26108074	C	T	HIST1H1T	Missense_Mutation	p.R83H	0.76	deleterious(0.04)	probably_damaging(0.929)
TCGA-KN-8428-01	6	29524017	29524017	C	A	UBD	Missense_Mutation	p.Q46H	0.28	tolerated(0.05)	benign(0.06)
TCGA-KN-8428-01	6	30864435	30864435	C	T	DDR1	Silent	p.G554G	0.70		
TCGA-KN-8428-01	6	30867171	30867171	C	T	DDR1	3'UTR		0.29		
TCGA-KN-8428-01	6	33169433	33169433	T	C	SLC39A7	Silent	p.Y137Y	0.15		
TCGA-KN-8428-01	6	3850118	3850118	C	T	FAM50B	Missense_Mutation	p.R25W	0.46	deleterious(0.01)	possibly_damaging(0.582)
TCGA-KN-8428-01	6	38773263	38773263	G	A	DNAH8	Missense_Mutation	p.R797Q	0.68		benign(0)
TCGA-KN-8428-01	6	41767668	41767668	G	A	USP49	Nonsense_Mutation	p.R524*	0.04		
TCGA-KN-8428-01	6	42641562	42641562	G	A	UBR2	Missense_Mutation	p.A1374T	0.52	tolerated(0.07)	benign(0.028)
TCGA-KN-8428-01	6	43164505	43164505	T	C	CUL9	Missense_Mutation	p.I903T	0.19	tolerated(0.7)	benign(0.034)
TCGA-KN-8428-01	6	43309889	43309889	C	T	ZNF318	Missense_Mutation	p.A1113T	0.33		benign(0.004)
TCGA-KN-8428-01	6	43323076	43323076	C	A	ZNF318	Missense_Mutation	p.A666S	0.69		benign(0.031)
TCGA-KN-8428-01	6	43415467	43415467	G	A	ABCC10	Missense_Mutation	p.V1251M	0.39	deleterious(0)	possibly_damaging(0.804)
TCGA-KN-8428-01	6	44329698	44329698	G	A	SPATS1	Silent	p.T181T	0.31		
TCGA-KN-8428-01	6	46726491	46726491	G	A	ANKRD66	Missense_Mutation	p.A197T	0.72	tolerated(0.95)	benign(0.004)
TCGA-KN-8428-01	6	49494458	49494458	C	T	GLYATL3	Missense_Mutation	p.T233M	0.75	tolerated(0.16)	benign(0.344)
TCGA-KN-8428-01	6	51695719	51695719	C	A	PKHD1	Missense_Mutation	p.G2748C	0.07	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	6	52109232	52109232	C	T	IL17F	5'UTR		0.79		
TCGA-KN-8428-01	6	54214609	54214609	G	A	TINAG	Missense_Mutation	p.R332Q	0.14	deleterious(0.01)	probably_damaging(0.985)
TCGA-KN-8428-01	6	7231628	7231628	C	T	RREB1	Missense_Mutation	p.T1099M	0.38	tolerated(0.08)	benign(0.439)
TCGA-KN-8428-01	6	7580988	7580988	C	T	DSP	Missense_Mutation	p.T1522M	0.32		benign(0.311)
TCGA-KN-8428-01	6	79711796	79711796	G	A	PHIP	Missense_Mutation	p.R567C	0.35	deleterious(0)	benign(0.312)
TCGA-KN-8428-01	6	86248557	86248557	G	A	SNX14	Missense_Mutation	p.R492W	0.76	deleterious(0)	possibly_damaging(0.884)
TCGA-KN-8428-01	6	88173817	88173817	A	G	C6ORF165	Missense_Mutation	p.Y573C	0.34	deleterious(0)	probably_damaging(0.993)
TCGA-KN-8428-01	6	90333671	90333671	T	C	ANKRD6	Silent	p.P371P	0.33		
TCGA-KN-8428-01	6	90661558	90661558	C	T	BACH2	Silent	p.P89P	0.86		
TCGA-KN-8428-01	6	91261815	91261815	G	A	MAP3K7	Missense_Mutation	p.R274C	0.27	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	7	100085892	100085892	G	A	NYAP1	Missense_Mutation	p.G183D	0.36	tolerated(0.59)	benign(0.062)
TCGA-KN-8428-01	7	100198383	100198383	G	A	FBXO24	Missense_Mutation	p.R573H	0.38	tolerated_low_confidence(0.21)	possibly_damaging(0.522)
TCGA-KN-8428-01	7	100334486	100334486	G	A	ZAN	Missense_Mutation	p.R103H	0.11		probably_damaging(0.994)
TCGA-KN-8428-01	7	100453339	100453339	C	T	SLC12A9	Missense_Mutation	p.R110C	0.40	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	7	100484814	100484814	C	T	SRRT	Silent	p.H656H	0.22		
TCGA-KN-8428-01	7	101259535	101259535	G	A	MYL10	Silent	p.F166F	0.31		
TCGA-KN-8428-01	7	102566787	102566787	G	A	FBXL13	Missense_Mutation	p.P271L	0.13	deleterious(0.02)	benign(0.012)
TCGA-KN-8428-01	7	105669000	105669000	C	T	CDHR3	Missense_Mutation	p.T759M	0.44	tolerated(0.34)	benign(0.001)
TCGA-KN-8428-01	7	107605032	107605032	A	G	LAMB1	Missense_Mutation	p.Y555H	0.07	deleterious(0.02)	probably_damaging(0.992)
TCGA-KN-8428-01	7	107717415	107717415	C	T	LAMB4	Missense_Mutation	p.A700T	0.46	tolerated(0.33)	benign(0.003)
TCGA-KN-8428-01	7	111368531	111368531	C	T	DOCK4	Silent	p.P1900P	0.32		
TCGA-KN-8428-01	7	116918232	116918232	C	T	WNT2	Missense_Mutation	p.A354T	0.16	tolerated_low_confidence(0.12)	benign(0.001)
TCGA-KN-8428-01	7	117407222	117407222	T	C	CTTNBP2	Silent	p.L929L	0.19		
TCGA-KN-8428-01	7	123346348	123346348	C	T	WASL	Missense_Mutation	p.R140H	0.27	deleterious(0.04)	unknown(0)
TCGA-KN-8428-01	7	12396889	12396889	A	G	VWDE	Splice_Site	p.X1175_splice	0.25		
TCGA-KN-8428-01	7	126173105	126173105	G	T	GRM8	Missense_Mutation	p.F777L	0.45	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8428-01	7	129855843	129855843	A	G	SSMEM1	Missense_Mutation	p.S90G	0.05	tolerated(0.29)	benign(0.294)
TCGA-KN-8428-01	7	130417993	130417993	G	A	KLF14	Missense_Mutation	p.R290C	0.06	deleterious_low_confidence(0)	probably_damaging(0.949)
TCGA-KN-8428-01	7	135292055	135292055	C	T	NUP205	Missense_Mutation	p.T1044M	0.38	tolerated(0.05)	possibly_damaging(0.817)
TCGA-KN-8428-01	7	138969008	138969010	CAG	-	UBN2	In_Frame_Del	p.S1120del	0.47		
TCGA-KN-8428-01	7	141619431	141619431	C	T	OR9A4	Silent	p.Y252Y	0.40		
TCGA-KN-8428-01	7	141952190	141952190	C	T	PRSS58	Missense_Mutation	p.E193K	0.37	tolerated(0.16)	probably_damaging(0.999)
TCGA-KN-8428-01	7	143807471	143807471	C	T	OR2A2	Nonsense_Mutation	p.R266*	0.19		
TCGA-KN-8428-01	7	149483252	149483252	G	A	SSPO	RNA		0.20		
TCGA-KN-8428-01	7	150490188	150490188	C	T	TMEM176B	Missense_Mutation	p.M196I	0.23	deleterious(0.01)	possibly_damaging(0.464)
TCGA-KN-8428-01	7	150648045	150648045	G	A	KCNH2	Silent	p.H703H	0.36		
TCGA-KN-8428-01	7	150747623	150747623	G	A	ASIC3	Silent	p.P247P	0.34		
TCGA-KN-8428-01	7	150779653	150779653	C	T	TMUB1	5'UTR		0.47		
TCGA-KN-8428-01	7	1588279	1588279	G	A	TMEM184A	Silent	p.S230S	0.09		
TCGA-KN-8428-01	7	18975462	18975462	C	T	HDAC9	Missense_Mutation	p.T945I	0.45	deleterious(0.03)	benign(0.206)
TCGA-KN-8428-01	7	19184413	19184413	C	T	FERD3L	3'UTR		0.10		
TCGA-KN-8428-01	7	20778687	20778687	G	A	ABCB5	Silent	p.S983S	0.06		
TCGA-KN-8428-01	7	23724139	23724139	A	T	FAM221A	Silent	p.G29G	0.14		
TCGA-KN-8428-01	7	27194428	27194428	C	T	HOXA7	3'UTR		0.50		
TCGA-KN-8428-01	7	30662010	30662010	G	A	GARS	Silent	p.V515V	0.47		
TCGA-KN-8428-01	7	30951659	30951659	G	A	AQP1	Silent	p.A45A	0.10		
TCGA-KN-8428-01	7	43917672	43917672	C	T	URGCP	Missense_Mutation	p.E464K	0.24	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8428-01	7	48148023	48148023	G	A	UPP1	3'UTR		0.54		
TCGA-KN-8428-01	7	6217521	6217521	C	T	CYTH3	Missense_Mutation	p.V101I	0.15	tolerated(1)	benign(0.004)
TCGA-KN-8428-01	7	65228339	65228339	T	C	SNORA15	3'Flank		0.16		
TCGA-KN-8428-01	7	72040339	72040339	G	A	TYW1B	3'Flank		0.19		
TCGA-KN-8428-01	7	72657436	72657436	G	A	GTF2IRD2P1	RNA		0.13		
TCGA-KN-8428-01	7	73630393	73630393	C	T	LAT2	Missense_Mutation	p.R30C	0.16	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	7	7472278	7472278	G	A	COL28A1	Silent	p.G638G	0.14		
TCGA-KN-8428-01	7	75608803	75608803	C	T	POR	Missense_Mutation	p.T91M	0.32	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8428-01	7	76024631	76024631	C	T	SRCRB4D	Silent	p.T295T	0.10		
TCGA-KN-8428-01	7	87537567	87537567	T	A	DBF4	3'UTR		0.33		
TCGA-KN-8428-01	7	89854552	89854552	C	T	STEAP2	Silent	p.C52C	0.42		
TCGA-KN-8428-01	7	90897167	90897167	G	A	FZD1	3'UTR		0.20		
TCGA-KN-8428-01	7	91631833	91631833	T	C	AKAP9	Missense_Mutation	p.Y868H	0.06		probably_damaging(0.967)
TCGA-KN-8428-01	7	92252390	92252390	G	A	CDK6	Missense_Mutation	p.R220C	0.51	tolerated(0.15)	benign(0.011)
TCGA-KN-8428-01	7	97823453	97823453	G	A	LMTK2	Missense_Mutation	p.A1226T	0.22	tolerated(0.82)	benign(0.008)
TCGA-KN-8428-01	7	98576517	98576517	C	T	TRRAP	Missense_Mutation	p.A2868V	0.30		benign(0.202)
TCGA-KN-8428-01	7	99669271	99669271	G	A	ZNF3	Missense_Mutation	p.T279M	0.39	deleterious(0)	probably_damaging(0.981)
TCGA-KN-8428-01	8	110587782	110587782	T	C	SYBU	Missense_Mutation	p.T449A	0.35	tolerated(0.3)	benign(0.011)
TCGA-KN-8428-01	8	113657336	113657336	A	G	CSMD3	Splice_Site	p.X1104_splice	0.14		
TCGA-KN-8428-01	8	116430676	116430676	C	T	TRPS1	Missense_Mutation	p.R902H	0.44	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	8	12045644	12045644	G	A	FAM86B1	Intron		0.20		
TCGA-KN-8428-01	8	120606001	120606001	C	T	ENPP2	Missense_Mutation	p.G410R	0.33	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	8	120628543	120628543	G	A	ENPP2	Nonsense_Mutation	p.R247*	0.37		
TCGA-KN-8428-01	8	123964437	123964437	C	T	ZHX2	Silent	p.L229L	0.45		
TCGA-KN-8428-01	8	13424581	13424581	C	G	C8orf48	Missense_Mutation	p.N27K	0.17	deleterious(0.01)	benign(0.015)
TCGA-KN-8428-01	8	134251102	134251102	C	T	NDRG1	3'UTR		0.57		
TCGA-KN-8428-01	8	135615108	135615108	G	A	ZFAT	Missense_Mutation	p.S285L	0.19	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8428-01	8	142178160	142178160	C	T	DENND3	Missense_Mutation	p.P524L	0.51	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	8	142477562	142477562	G	A	MROH5	3'UTR		0.23		
TCGA-KN-8428-01	8	143566068	143566068	G	A	BAI1	Missense_Mutation	p.V751I	0.12	tolerated(0.42)	benign(0.312)
TCGA-KN-8428-01	8	143746611	143746611	C	T	JRK	RNA		0.32		
TCGA-KN-8428-01	8	144800421	144800421	G	A	MAPK15	Missense_Mutation	p.V79M	0.35	deleterious(0)	probably_damaging(0.98)
TCGA-KN-8428-01	8	144942815	144942815	G	A	EPPK1	Missense_Mutation	p.A1536V	0.22		benign(0.083)
TCGA-KN-8428-01	8	144995547	144995547	G	A	PLEC	Silent	p.G2951G	0.22		
TCGA-KN-8428-01	8	145094825	145094825	C	T	SPATC1	Missense_Mutation	p.P76L	0.46	tolerated(0.06)	benign(0.066)
TCGA-KN-8428-01	8	145138659	145138659	C	T	GPAA1	Missense_Mutation	p.R137C	0.40	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	8	145139221	145139221	G	A	GPAA1	Silent	p.T267T	0.20		
TCGA-KN-8428-01	8	145668062	145668062	C	T	TONSL	Silent	p.A192A	0.20		
TCGA-KN-8428-01	8	145746758	145746758	G	A	LRRC14	Missense_Mutation	p.V460I	0.55	tolerated(0.09)	possibly_damaging(0.616)
TCGA-KN-8428-01	8	146015277	146015277	G	A	RPL8	Missense_Mutation	p.A229V	0.27	deleterious(0.01)	possibly_damaging(0.822)
TCGA-KN-8428-01	8	17503472	17503472	G	A	MTUS1	Missense_Mutation	p.S1259L	0.37	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	8	19363316	19363316	C	T	CSGALNACT1	Silent	p.A10A	0.49		
TCGA-KN-8428-01	8	20070346	20070346	C	T	ATP6V1B2	Missense_Mutation	p.A286V	0.16	deleterious(0.02)	possibly_damaging(0.8)
TCGA-KN-8428-01	8	20110814	20110814	C	T	LZTS1	Missense_Mutation	p.A210T	0.51	tolerated(0.07)	probably_damaging(0.957)
TCGA-KN-8428-01	8	2033488	2033488	G	A	MYOM2	Missense_Mutation	p.R537H	0.47	tolerated(0.06)	benign(0.178)
TCGA-KN-8428-01	8	21924625	21924625	C	T	DMTN	Silent	p.S16S	0.31		
TCGA-KN-8428-01	8	21983099	21983099	G	A	HR	Missense_Mutation	p.R518W	0.16	deleterious(0.05)	benign(0.003)
TCGA-KN-8428-01	8	22012104	22012104	C	T	LGI3	Missense_Mutation	p.A107T	0.12	deleterious(0)	possibly_damaging(0.657)
TCGA-KN-8428-01	8	23153579	23153579	G	A	R3HCC1	Missense_Mutation	p.R244Q	0.09	tolerated(0.21)	benign(0.019)
TCGA-KN-8428-01	8	23174480	23174480	C	T	LOXL2	Missense_Mutation	p.G540R	0.28	deleterious(0.01)	probably_damaging(1)
TCGA-KN-8428-01	8	23174516	23174516	C	T	LOXL2	Missense_Mutation	p.V528M	0.06	deleterious(0.01)	possibly_damaging(0.824)
TCGA-KN-8428-01	8	25341585	25341585	G	A	CDCA2	Silent	p.L408L	0.38		
TCGA-KN-8428-01	8	26237164	26237164	G	A	BNIP3L	5'Flank		0.34		
TCGA-KN-8428-01	8	26513189	26513189	C	T	DPYSL2	Silent	p.P562P	0.12		
TCGA-KN-8428-01	8	27097422	27097422	G	A	STMN4	Intron		0.22		
TCGA-KN-8428-01	8	27679912	27679912	C	T	PBK	Missense_Mutation	p.R130Q	0.42	deleterious(0.04)	benign(0.377)
TCGA-KN-8428-01	8	30436512	30436512	G	A	GTF2E2	Nonsense_Mutation	p.R268*	0.36		
TCGA-KN-8428-01	8	37706116	37706116	C	T	BRF2	Missense_Mutation	p.R71Q	0.19	tolerated(0.11)	benign(0.022)
TCGA-KN-8428-01	8	42015607	42015607	G	A	AP3M2	Missense_Mutation	p.R141Q	0.54	tolerated(0.12)	benign(0.027)
TCGA-KN-8428-01	8	42179650	42179650	G	A	IKBKB	Missense_Mutation	p.R606Q	0.06	tolerated(0.07)	possibly_damaging(0.51)
TCGA-KN-8428-01	8	42296994	42296994	G	A	SLC20A2	Missense_Mutation	p.A303V	0.38	tolerated(0.31)	benign(0.002)
TCGA-KN-8428-01	8	42873507	42873507	A	G	HOOK3	Missense_Mutation	p.T675A	0.16	tolerated(1)	benign(0.01)
TCGA-KN-8428-01	8	43052122	43052122	G	A	HGSNAT	Missense_Mutation	p.R499Q	0.18	tolerated(1)	benign(0.002)
TCGA-KN-8428-01	8	54147439	54147439	C	T	OPRK1	Missense_Mutation	p.V164M	0.19	deleterious(0.02)	probably_damaging(0.991)
TCGA-KN-8428-01	8	59499082	59499082	G	A	NSMAF	Missense_Mutation	p.T825M	0.18	deleterious(0.02)	possibly_damaging(0.765)
TCGA-KN-8428-01	8	61766042	61766042	A	G	CHD7	Missense_Mutation	p.E2253G	0.22		benign(0.444)
TCGA-KN-8428-01	8	72129051	72129051	T	C	EYA1	Silent	p.A412A	0.47		
TCGA-KN-8428-01	8	77775707	77775707	G	A	ZFHX4	Missense_Mutation	p.D3253N	0.23		benign(0.004)
TCGA-KN-8428-01	8	82571603	82571603	G	A	IMPA1	Nonsense_Mutation	p.R332*	0.17		
TCGA-KN-8428-01	8	91029431	91029431	C	T	DECR1	Missense_Mutation	p.A50V	0.15	tolerated(0.7)	benign(0)
TCGA-KN-8428-01	8	95541376	95541376	G	A	KIAA1429	Nonsense_Mutation	p.R268*	0.18		
TCGA-KN-8428-01	8	98943420	98943420	C	T	MATN2	Missense_Mutation	p.R128W	0.34	deleterious(0.01)	probably_damaging(0.93)
TCGA-KN-8428-01	9	103064527	103064527	G	A	TEX10	Silent	p.N912N	0.46		
TCGA-KN-8428-01	9	103348063	103348063	C	T	MURC	Missense_Mutation	p.P142L	0.05	deleterious(0)	probably_damaging(0.989)
TCGA-KN-8428-01	9	104153053	104153053	G	A	MRPL50	Nonsense_Mutation	p.R58*	0.65		
TCGA-KN-8428-01	9	116353631	116353631	G	A	RGS3	Missense_Mutation	p.V1012I	0.22	tolerated(0.17)	benign(0.107)
TCGA-KN-8428-01	9	116812166	116812166	G	A	ZNF618	Missense_Mutation	p.A769T	0.16	tolerated(0.46)	benign(0.002)
TCGA-KN-8428-01	9	117797539	117797539	G	A	TNC	Missense_Mutation	p.R1911W	0.25	deleterious(0.02)	probably_damaging(0.971)
TCGA-KN-8428-01	9	122001025	122001025	C	T	BRINP1	Missense_Mutation	p.R198H	0.32	deleterious(0)	probably_damaging(0.946)
TCGA-KN-8428-01	9	123526801	123526801	G	A	FBXW2	3'UTR		0.63		
TCGA-KN-8428-01	9	124545879	124545879	G	A	DAB2IP	3'UTR		0.13		
TCGA-KN-8428-01	9	124545962	124545962	G	A	DAB2IP	3'UTR		0.40		
TCGA-KN-8428-01	9	127064218	127064218	G	A	NEK6	Missense_Mutation	p.R26H	0.24	tolerated_low_confidence(0.18)	benign(0.001)
TCGA-KN-8428-01	9	127975736	127975736	G	A	RABEPK	Missense_Mutation	p.R100H	0.20	tolerated(0.18)	benign(0.001)
TCGA-KN-8428-01	9	129641862	129641862	C	T	ZBTB34	Missense_Mutation	p.R58W	0.04	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	9	129642636	129642636	C	T	ZBTB34	Nonsense_Mutation	p.R316*	0.24		
TCGA-KN-8428-01	9	129870870	129870870	C	T	ANGPTL2	Silent	p.A47A	0.31		
TCGA-KN-8428-01	9	130569287	130569287	G	A	FPGS	Missense_Mutation	p.R141H	0.16	deleterious(0)	probably_damaging(0.987)
TCGA-KN-8428-01	9	130670642	130670642	C	T	ST6GALNAC4	3'UTR		0.08		
TCGA-KN-8428-01	9	130684387	130684387	C	T	PIP5KL1	Silent	p.V308V	0.58		
TCGA-KN-8428-01	9	131023004	131023004	G	A	GOLGA2	Missense_Mutation	p.R473W	0.29	deleterious(0.03)	possibly_damaging(0.827)
TCGA-KN-8428-01	9	131329101	131329101	C	T	SPTAN1	Missense_Mutation	p.R28C	0.53	deleterious(0.01)	probably_damaging(0.932)
TCGA-KN-8428-01	9	131395657	131395657	G	A	SPTAN1	3'UTR		0.19		
TCGA-KN-8428-01	9	131849014	131849014	G	A	DOLPP1	Missense_Mutation	p.R206Q	0.54	deleterious(0.04)	possibly_damaging(0.525)
TCGA-KN-8428-01	9	131904858	131904858	G	A	PPP2R4	Intron		0.23		
TCGA-KN-8428-01	9	134334701	134334701	G	A	PRRC2B	Silent	p.P454P	0.30		
TCGA-KN-8428-01	9	135073709	135073709	G	A	NTNG2	Silent	p.A190A	0.60		
TCGA-KN-8428-01	9	135553528	135553528	C	T	GTF3C4	Silent	p.C174C	0.54		
TCGA-KN-8428-01	9	135919149	135919149	G	A	GTF3C5	Silent	p.T136T	0.45		
TCGA-KN-8428-01	9	137712006	137712006	G	T	COL5A1	Missense_Mutation	p.Q1497H	0.25		unknown(0)
TCGA-KN-8428-01	9	139313590	139313590	A	G	PMPCA	Intron		0.09		
TCGA-KN-8428-01	9	139730292	139730292	C	T	RABL6	Silent	p.Y269Y	0.25		
TCGA-KN-8428-01	9	139908708	139908708	G	A	ABCA2	Silent	p.G1384G	0.34		
TCGA-KN-8428-01	9	139915957	139915957	G	A	ABCA2	Nonsense_Mutation	p.Q262*	0.31		
TCGA-KN-8428-01	9	140074818	140074818	G	A	ANAPC2	Missense_Mutation	p.R569C	0.46	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	9	140115390	140115390	G	A	RNF208	Missense_Mutation	p.P92L	0.31	tolerated_low_confidence(1)	possibly_damaging(0.673)
TCGA-KN-8428-01	9	140355132	140355132	G	A	PNPLA7	Missense_Mutation	p.A1300V	0.54	tolerated_low_confidence(0.25)	benign(0.149)
TCGA-KN-8428-01	9	140941360	140941360	C	T	CACNA1B	Missense_Mutation	p.R1140C	0.44	deleterious(0)	possibly_damaging(0.673)
TCGA-KN-8428-01	9	16552695	16552695	C	T	BNC2	Missense_Mutation	p.V168M	0.14	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8428-01	9	19121114	19121114	G	A	PLIN2	Missense_Mutation	p.T120M	0.06	tolerated(0.08)	benign(0.104)
TCGA-KN-8428-01	9	27949033	27949033	G	T	LINGO2	Missense_Mutation	p.A546D	0.15	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8428-01	9	33917339	33917339	G	A	UBE2R2	3'UTR		0.27		
TCGA-KN-8428-01	9	34661943	34661943	A	G	CCL27	Nonstop_Mutation	p.*113Rext*4	0.13		
TCGA-KN-8428-01	9	35095327	35095327	C	T	PIGO	Missense_Mutation	p.R79Q	0.28	deleterious(0.01)	possibly_damaging(0.86)
TCGA-KN-8428-01	9	35396917	35396917	C	T	UNC13B	Nonsense_Mutation	p.R1090*	0.13		
TCGA-KN-8428-01	9	35664388	35664389	CT	-	ARHGEF39	Frame_Shift_Del	p.R112Vfs*13	0.20		
TCGA-KN-8428-01	9	71668178	71668178	T	C	FXN	Splice_Site	p.X128_splice	0.23		
TCGA-KN-8428-01	9	78641898	78641898	G	A	PCSK5	Missense_Mutation	p.V193M	0.06	deleterious(0.04)	probably_damaging(0.976)
TCGA-KN-8428-01	9	79322501	79322501	T	C	PRUNE2	Silent	p.Q1563Q	0.04		
TCGA-KN-8428-01	9	8485823	8485823	C	T	PTPRD	Silent	p.T998T	0.24		
TCGA-KN-8428-01	9	86571236	86571236	G	A	C9orf64	Silent	p.A60A	0.20		
TCGA-KN-8428-01	9	86584247	86584247	T	C	HNRNPK	3'UTR		0.06		
TCGA-KN-8428-01	9	91692802	91692802	C	T	SHC3	Missense_Mutation	p.V188I	0.49	tolerated(0.05)	benign(0.362)
TCGA-KN-8428-01	X	103294871	103294871	G	A	H2BFM	Missense_Mutation	p.V110M	0.30	tolerated(0.07)	benign(0.419)
TCGA-KN-8428-01	X	103431192	103431192	C	T	FAM199X	Missense_Mutation	p.R207W	0.07	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8428-01	X	104463685	104463685	G	A	TEX13A	Silent	p.F397F	0.46		
TCGA-KN-8428-01	X	117907851	117907851	G	A	IL13RA1	Missense_Mutation	p.R340H	0.09	tolerated(0.14)	benign(0.003)
TCGA-KN-8428-01	X	125299514	125299514	G	A	DCAF12L2	Missense_Mutation	p.R132C	0.15	deleterious(0)	possibly_damaging(0.88)
TCGA-KN-8428-01	X	129190044	129190044	T	C	BCORL1	Missense_Mutation	p.V1690A	0.40		probably_damaging(0.935)
TCGA-KN-8428-01	X	129363022	129363022	T	C	ZNF280C	Missense_Mutation	p.Y359C	0.05	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8428-01	X	129804011	129804011	G	A	ENOX2	Missense_Mutation	p.R237C	0.39	deleterious(0.02)	benign(0.011)
TCGA-KN-8428-01	X	13337345	13337345	G	A	ATXN3L	Missense_Mutation	p.R237C	0.45	deleterious(0.05)	possibly_damaging(0.893)
TCGA-KN-8428-01	X	138884415	138884415	C	T	ATP11C	Silent	p.Q216Q	0.93		
TCGA-KN-8428-01	X	147011711	147011711	G	A	FMR1	Missense_Mutation	p.R193H	0.08	deleterious(0.01)	benign(0.348)
TCGA-KN-8428-01	X	1506261	1506261	G	A	SLC25A6	Missense_Mutation	p.A217V	0.27	deleterious(0.02)	probably_damaging(0.991)
TCGA-KN-8428-01	X	152915503	152915503	G	A	DUSP9	Missense_Mutation	p.V300I	0.31	tolerated(0.07)	possibly_damaging(0.764)
TCGA-KN-8428-01	X	153037418	153037418	G	A	PLXNB3	Missense_Mutation	p.V896M	0.56	deleterious(0)	probably_damaging(0.93)
TCGA-KN-8428-01	X	153170437	153170437	T	C	AVPR2	5'UTR		0.57		
TCGA-KN-8428-01	X	153186121	153186121	G	A	ARHGAP4	Missense_Mutation	p.R214C	0.53	deleterious(0)	probably_damaging(1)
TCGA-KN-8428-01	X	153296438	153296438	C	T	MECP2	Missense_Mutation	p.A293T	0.88	deleterious(0.04)	benign(0.431)
TCGA-KN-8428-01	X	154197604	154197604	A	G	F8	Splice_Site	p.X337_splice	0.32		
TCGA-KN-8428-01	X	155005428	155005428	G	A	SPRY3	3'UTR		0.24		
TCGA-KN-8428-01	X	21675168	21675168	G	A	KLHL34	Missense_Mutation	p.R247W	0.07	tolerated(0.15)	possibly_damaging(0.462)
TCGA-KN-8428-01	X	35944236	35944236	C	T	CXorf22	Missense_Mutation	p.R118W	0.38	deleterious(0)	possibly_damaging(0.784)
TCGA-KN-8428-01	X	37028375	37028375	G	A	FAM47C	Missense_Mutation	p.R631H	0.87	tolerated(0.74)	possibly_damaging(0.579)
TCGA-KN-8428-01	X	37312778	37312778	A	G	PRRG1	Silent	p.E187E	0.08		
TCGA-KN-8428-01	X	49106626	49106626	C	T	CCDC22	Silent	p.G596G	0.90		
TCGA-KN-8428-01	X	53615355	53615355	G	A	HUWE1	Missense_Mutation	p.T1534M	0.07		probably_damaging(0.949)
TCGA-KN-8428-01	X	54012317	54012317	G	A	PHF8	Silent	p.G723G	0.83		
TCGA-KN-8428-01	X	5827148	5827148	G	A	NLGN4X	Missense_Mutation	p.S253L	0.89	deleterious(0.03)	probably_damaging(0.999)
TCGA-KN-8428-01	X	69595076	69595076	C	T	KIF4A	Missense_Mutation	p.R601C	0.88	tolerated(0.05)	benign(0.021)
TCGA-KN-8428-01	X	70080718	70080718	G	A	TEX11	Nonsense_Mutation	p.R120*	0.35		
TCGA-KN-8428-01	X	71360545	71360545	C	T	NHSL2	Silent	p.G1049G	0.37		
TCGA-KN-8428-01	X	83599463	83599463	A	C	HDX	Silent	p.T485T	0.07		
TCGA-KN-8429-01	11	55587779	55587779	C	T	OR5D18	Missense_Mutation	p.T225I	0.09	deleterious(0.01)	benign(0.337)
TCGA-KN-8429-01	11	64533401	64533401	A	C	SF1	Intron		0.32		
TCGA-KN-8429-01	11	93462806	93462806	C	T	KIAA1731	Missense_Mutation	p.P2476S	0.05	tolerated(0.15)	benign(0.009)
TCGA-KN-8429-01	12	113333605	113333605	C	G	RPH3A	Missense_Mutation	p.H627Q	0.43	deleterious(0.05)	possibly_damaging(0.53)
TCGA-KN-8429-01	15	79324635	79324635	G	A	RASGRF1	Missense_Mutation	p.P328S	0.41	tolerated(0.07)	probably_damaging(1)
TCGA-KN-8429-01	19	11598244	11598244	A	G	ZNF653	Missense_Mutation	p.V345A	0.07	tolerated_low_confidence(1)	benign(0)
TCGA-KN-8429-01	1	151497210	151497210	G	T	CGN	Nonsense_Mutation	p.E488*	0.05		
TCGA-KN-8429-01	1	154315638	154315638	C	T	ATP8B2	Silent	p.T534T	0.09		
TCGA-KN-8429-01	1	157805692	157805692	C	G	CD5L	Missense_Mutation	p.L103F	0.05	deleterious(0.04)	probably_damaging(1)
TCGA-KN-8429-01	1	237167482	237167482	C	T	MT1HL1	3'UTR		0.46		
TCGA-KN-8429-01	3	13544436	13544436	A	G	HDAC11	Missense_Mutation	p.D202G	0.24	deleterious(0.04)	probably_damaging(0.979)
TCGA-KN-8429-01	3	169540071	169540071	G	A	LRRIQ4	Missense_Mutation	p.R121H	0.43	tolerated(0.1)	possibly_damaging(0.619)
TCGA-KN-8429-01	3	189526226	189526226	G	A	TP63	Missense_Mutation	p.A164T	0.05	tolerated(0.68)	probably_damaging(0.995)
TCGA-KN-8429-01	3	197348716	197348716	A	C	AC024560.3	RNA		0.42		
TCGA-KN-8429-01	4	25005583	25005583	C	T	LGI2	Silent	p.A376A	0.39		
TCGA-KN-8429-01	6	96663484	96663484	A	G	FUT9	3'UTR		0.18		
TCGA-KN-8429-01	7	138437565	138437565	C	G	ATP6V0A4	Missense_Mutation	p.E278D	0.46	tolerated(0.07)	benign(0.248)
TCGA-KN-8429-01	7	138437566	138437566	T	A	ATP6V0A4	Missense_Mutation	p.E278V	0.46	deleterious(0)	probably_damaging(0.968)
TCGA-KN-8429-01	7	6487540	6487540	C	T	DAGLB	5'UTR		0.42		
TCGA-KN-8429-01	8	8998708	8998708	G	A	PPP1R3B	Nonsense_Mutation	p.Q152*	0.43		
TCGA-KN-8430-01	11	130284611	130284611	G	A	ADAMTS8	Missense_Mutation	p.R461C	0.47	deleterious(0)	probably_damaging(0.939)
TCGA-KN-8430-01	11	35226107	35226107	A	G	CD44	Missense_Mutation	p.E401G	0.05	deleterious(0)	benign(0.039)
TCGA-KN-8430-01	11	65409950	65409950	G	C	SIPA1	Missense_Mutation	p.G275A	0.36	deleterious(0.02)	probably_damaging(0.999)
TCGA-KN-8430-01	11	76917244	76917244	C	G	MYO7A	Missense_Mutation	p.D1913E	0.40	tolerated(0.29)	probably_damaging(0.943)
TCGA-KN-8430-01	11	92543184	92543184	T	A	FAT3	Nonsense_Mutation	p.Y3141*	0.07		
TCGA-KN-8430-01	11	9610060	9610060	A	T	WEE1	Missense_Mutation	p.M618L	0.26	tolerated(0.68)	benign(0.014)
TCGA-KN-8430-01	12	12871758	12871758	G	C	CDKN1B	Splice_Site	p.X159_splice	0.09		
TCGA-KN-8430-01	12	131593399	131593399	G	A	GPR133	Missense_Mutation	p.R673H	0.05	tolerated(0.56)	benign(0.009)
TCGA-KN-8430-01	12	5023352	5023352	C	A	KCNA1	3'UTR		0.04		
TCGA-KN-8430-01	16	58031971	58031971	G	C	ZNF319	Missense_Mutation	p.P67A	0.34	tolerated(0.29)	benign(0)
TCGA-KN-8430-01	16	72110892	72110892	A	G	HPR	Missense_Mutation	p.D320G	0.07	tolerated(0.87)	probably_damaging(1)
TCGA-KN-8430-01	17	34044214	34044214	A	G	AP2B1	Missense_Mutation	p.D876G	0.08	deleterious(0)	benign(0.198)
TCGA-KN-8430-01	18	43418922	43418922	T	C	SIGLEC15	Missense_Mutation	p.S246P	0.14	deleterious(0.03)	benign(0.356)
TCGA-KN-8430-01	19	31768447	31768447	A	G	TSHZ3	Missense_Mutation	p.F751S	0.42	tolerated(0.3)	benign(0.014)
TCGA-KN-8430-01	19	35614537	35614537	C	T	FXYD3	3'UTR		0.38		
TCGA-KN-8430-01	19	38127148	38127148	C	A	ZFP30	Missense_Mutation	p.M98I	0.14	tolerated(1)	benign(0)
TCGA-KN-8430-01	19	55870550	55870550	G	T	FAM71E2	Silent	p.G562G	0.15		
TCGA-KN-8430-01	1	109805471	109805471	G	T	CELSR2	Missense_Mutation	p.D1530Y	0.30	deleterious(0)	possibly_damaging(0.516)
TCGA-KN-8430-01	1	39799215	39799215	A	T	MACF1	Intron		0.28		
TCGA-KN-8430-01	20	61926524	61926524	G	T	COL20A1	Missense_Mutation	p.G22V	0.13	tolerated(0.1)	benign(0.009)
TCGA-KN-8430-01	21	33370902	33370902	C	A	HUNK	Missense_Mutation	p.S517Y	0.05	deleterious_low_confidence(0)	probably_damaging(0.999)
TCGA-KN-8430-01	21	34143635	34143635	A	G	PAXBP1	Splice_Site	p.X115_splice	0.12		
TCGA-KN-8430-01	21	41719789	41719789	T	C	DSCAM	Missense_Mutation	p.T340A	0.05	tolerated(0.33)	benign(0.004)
TCGA-KN-8430-01	22	19175230	19175230	G	A	CLTCL1	Missense_Mutation	p.A1482V	0.26	tolerated(0.19)	benign(0.007)
TCGA-KN-8430-01	22	29517360	29517360	G	T	KREMEN1	Missense_Mutation	p.G123V	0.26	deleterious(0)	probably_damaging(1)
TCGA-KN-8430-01	2	131486934	131486934	G	A	GPR148	Silent	p.L70L	0.20		
TCGA-KN-8430-01	2	136558375	136558375	G	A	LCT	Silent	p.V1556V	0.09		
TCGA-KN-8430-01	2	171709233	171709233	A	C	GAD1	Silent	p.S398S	0.16		
TCGA-KN-8430-01	2	233740680	233740680	T	C	C2orf82	Missense_Mutation	p.L35P	0.11	deleterious(0.03)	probably_damaging(0.998)
TCGA-KN-8430-01	2	3743874	3743874	G	A	ALLC	Missense_Mutation	p.G226E	0.08	tolerated(0.1)	benign(0)
TCGA-KN-8430-01	2	97361534	97361534	A	G	FER1L5	RNA		0.07		
TCGA-KN-8430-01	3	10107113	10107113	G	A	FANCD2	Missense_Mutation	p.R735Q	0.41	deleterious(0.01)	possibly_damaging(0.897)
TCGA-KN-8430-01	3	136076575	136076575	C	T	STAG1	Missense_Mutation	p.D1018N	0.19	deleterious(0)	probably_damaging(1)
TCGA-KN-8430-01	3	14724245	14724246	-	A	C3orf20	Frame_Shift_Ins	p.L10Ifs*39	0.16		
TCGA-KN-8430-01	3	16629962	16629962	C	T	DAZL	3'UTR		0.14		
TCGA-KN-8430-01	3	16630125	16630125	C	G	DAZL	3'UTR		0.13		
TCGA-KN-8430-01	3	16630168	16630168	C	G	DAZL	Nonstop_Mutation	p.*316Sext*6	0.12		
TCGA-KN-8430-01	3	52643600	52643600	C	A	PBRM1	Missense_Mutation	p.D766Y	0.04	deleterious(0.01)	possibly_damaging(0.836)
TCGA-KN-8430-01	4	110221771	110221771	C	G	COL25A1	Missense_Mutation	p.R112T	0.05	deleterious(0.02)	benign(0.035)
TCGA-KN-8430-01	4	123265699	123265699	C	T	KIAA1109	Missense_Mutation	p.T4239M	0.34		possibly_damaging(0.508)
TCGA-KN-8430-01	4	44176969	44176969	G	C	KCTD8	Silent	p.S420S	0.03		
TCGA-KN-8430-01	4	57181970	57181970	G	A	KIAA1211	Missense_Mutation	p.E768K	0.40	tolerated(0.16)	possibly_damaging(0.502)
TCGA-KN-8430-01	4	89408222	89408222	C	T	HERC5	Silent	p.D618D	0.40		
TCGA-KN-8430-01	5	32444365	32444372	GCCCCGCT	-	ZFR	Frame_Shift_Del	p.S34Gfs*10	0.10		
TCGA-KN-8430-01	6	138753237	138753237	T	C	NHSL1	Missense_Mutation	p.T753A	0.07	tolerated(0.29)	benign(0.057)
TCGA-KN-8430-01	6	44150954	44150954	A	G	CAPN11	Missense_Mutation	p.R706G	0.06	deleterious(0)	probably_damaging(0.966)
TCGA-KN-8430-01	7	156742689	156742689	G	A	NOM1	Silent	p.R86R	0.54		
TCGA-KN-8430-01	7	98609129	98609129	G	A	TRRAP	Missense_Mutation	p.A3756T	0.35		probably_damaging(0.939)
TCGA-KN-8430-01	8	117954928	117954928	G	A	AARD	Silent	p.A152A	0.39		
TCGA-KN-8430-01	8	92378833	92378833	T	C	SLC26A7	Missense_Mutation	p.I505T	0.41	deleterious(0.01)	benign(0.22)
TCGA-KN-8430-01	9	108358893	108358893	G	T	FKTN	Missense_Mutation	p.L40F	0.06	tolerated_low_confidence(0.36)	benign(0.001)
TCGA-KN-8430-01	9	137772665	137772665	G	A	FCN2	5'UTR		0.33		
TCGA-KN-8430-01	X	103294677	103294677	G	A	H2BFM	Missense_Mutation	p.R45H	0.24	tolerated(0.1)	benign(0.025)
TCGA-KN-8430-01	X	77395154	77395154	G	A	TAF9B	5'UTR		0.86		
TCGA-KN-8431-01	11	56230641	56230641	C	A	OR5M9	Missense_Mutation	p.M79I	0.04	deleterious(0.01)	possibly_damaging(0.604)
TCGA-KN-8431-01	12	121891003	121891003	A	G	KDM2B	Missense_Mutation	p.C627R	0.12	deleterious(0)	probably_damaging(1)
TCGA-KN-8431-01	14	103576543	103576543	C	T	EXOC3L4	Silent	p.L718L	0.09		
TCGA-KN-8431-01	14	50626363	50626363	A	T	SOS2	Missense_Mutation	p.S546R	0.04	tolerated(0.05)	probably_damaging(0.953)
TCGA-KN-8431-01	14	50626456	50626456	T	A	SOS2	Silent	p.V515V	0.03		
TCGA-KN-8431-01	16	65006841	65006841	G	T	CDH11	Silent	p.A452A	0.06		
TCGA-KN-8431-01	16	89167160	89167160	C	T	ACSF3	Missense_Mutation	p.A24V	0.59	tolerated_low_confidence(0.6)	benign(0)
TCGA-KN-8431-01	17	36099508	36099510	TTG	-	HNF1B	In_Frame_Del	p.N155del	0.70		
TCGA-KN-8431-01	17	74075997	74075997	A	G	ZACN	Missense_Mutation	p.N99S	0.08	deleterious(0.01)	possibly_damaging(0.67)
TCGA-KN-8431-01	17	79164828	79164828	T	C	AZI1	Missense_Mutation	p.E941G	0.18	deleterious(0)	probably_damaging(0.913)
TCGA-KN-8431-01	1	205225438	205225438	T	A	TMCC2	Intron		0.19		
TCGA-KN-8431-01	1	23696027	23696028	-	T	C1orf213	Frame_Shift_Ins	p.L80Ffs*9	0.46		
TCGA-KN-8431-01	1	89279316	89279316	T	C	PKN2	Missense_Mutation	p.F727L	0.06	deleterious(0.02)	probably_damaging(0.956)
TCGA-KN-8431-01	21	41684190	41684190	G	A	DSCAM	Missense_Mutation	p.T627M	0.10	tolerated(0.07)	possibly_damaging(0.806)
TCGA-KN-8431-01	2	207008833	207008833	C	G	NDUFS1	Missense_Mutation	p.R313P	0.54	deleterious(0.02)	possibly_damaging(0.904)
TCGA-KN-8431-01	2	26502036	26502036	A	G	HADHB	Missense_Mutation	p.T222A	0.10	deleterious(0.05)	possibly_damaging(0.491)
TCGA-KN-8431-01	4	156136035	156136035	T	A	NPY2R	Missense_Mutation	p.M315K	0.34	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8431-01	5	61653554	61653554	C	T	KIF2A	Nonsense_Mutation	p.R231*	0.64		
TCGA-KN-8431-01	6	56480802	56480802	C	T	DST	Intron		0.69		
TCGA-KN-8431-01	7	105182935	105182935	T	C	RINT1	Silent	p.N118N	0.34		
TCGA-KN-8431-01	8	53477836	53477836	A	G	FAM150A	5'UTR		0.13		
TCGA-KN-8431-01	9	91618268	91618268	C	A	S1PR3	3'UTR		0.06		
TCGA-KN-8431-01	X	48545247	48545247	C	T	WAS	Missense_Mutation	p.R213C	0.07	deleterious(0)	probably_damaging(1)
TCGA-KN-8432-01	10	103900543	103900543	A	G	PPRC1	Missense_Mutation	p.R760G	0.12	deleterious_low_confidence(0)	probably_damaging(0.985)
TCGA-KN-8432-01	10	29578015	29578015	C	T	LYZL1	5'UTR		0.63		
TCGA-KN-8432-01	11	5530008	5530008	T	C	UBQLN3	Missense_Mutation	p.I261V	0.07	tolerated(0.12)	benign(0.011)
TCGA-KN-8432-01	11	5809593	5809593	G	A	OR52N1	Missense_Mutation	p.L152F	0.49	tolerated(0.06)	benign(0.062)
TCGA-KN-8432-01	11	63988121	63988121	C	T	FERMT3	Nonsense_Mutation	p.R513*	0.17		
TCGA-KN-8432-01	11	64676833	64676833	T	C	ATG2A	Missense_Mutation	p.Y705C	0.08	deleterious(0)	probably_damaging(0.972)
TCGA-KN-8432-01	12	49373357	49373365	CTGATACGC	-	WNT1	In_Frame_Del	p.L71_R73del	0.29		
TCGA-KN-8432-01	12	76461198	76461198	T	C	NAP1L1	Silent	p.Q53Q	0.07		
TCGA-KN-8432-01	13	33016882	33016882	A	C	N4BP2L2	Missense_Mutation	p.F598V	0.59	tolerated(0.06)	benign(0.006)
TCGA-KN-8432-01	14	64727212	64727212	C	T	ESR2	Missense_Mutation	p.D303N	0.23	deleterious(0)	probably_damaging(0.984)
TCGA-KN-8432-01	14	71196903	71196903	C	T	MAP3K9	3'UTR		0.41		
TCGA-KN-8432-01	14	74824716	74824716	G	C	VRTN	Missense_Mutation	p.E410D	0.07	deleterious(0.02)	probably_damaging(0.994)
TCGA-KN-8432-01	15	45954211	45954211	C	T	SQRDL	Missense_Mutation	p.S98L	0.05	tolerated(0.19)	benign(0.007)
TCGA-KN-8432-01	15	50884111	50884111	C	T	TRPM7	Missense_Mutation	p.V1441I	0.06	tolerated_low_confidence(0.11)	benign(0.001)
TCGA-KN-8432-01	15	62361182	62361182	C	A	C2CD4A	3'UTR		0.18		
TCGA-KN-8432-01	15	73995325	73995325	G	T	CD276	Missense_Mutation	p.V211L	0.28	tolerated(0.36)	benign(0.013)
TCGA-KN-8432-01	15	85334093	85334093	A	G	ZNF592	Missense_Mutation	p.Y793C	0.11	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8432-01	15	85478733	85478733	G	T	SLC28A1	Missense_Mutation	p.R522M	0.07	tolerated(0.1)	possibly_damaging(0.764)
TCGA-KN-8432-01	16	57057697	57057697	G	T	NLRC5	Missense_Mutation	p.G119V	0.13	tolerated(0.07)	benign(0.232)
TCGA-KN-8432-01	16	67472365	67472388	CACACACACGCGCACACACACACA	-	ATP6V0D1	3'UTR		0.24		
TCGA-KN-8432-01	16	71419536	71419536	C	T	CALB2	Silent	p.Y228Y	0.12		
TCGA-KN-8432-01	16	89838101	89838101	C	T	FANCA	Silent	p.E712E	0.10		
TCGA-KN-8432-01	17	27028052	27028052	C	T	SUPT6H	Nonsense_Mutation	p.Q1634*	0.07		
TCGA-KN-8432-01	17	38346943	38346943	C	T	RAPGEFL1	Nonsense_Mutation	p.R216*	0.07		
TCGA-KN-8432-01	17	62021160	62021160	G	A	SCN4A	Silent	p.N1321N	0.17		
TCGA-KN-8432-01	17	79633801	79633801	C	T	CCDC137	Missense_Mutation	p.A2V	0.33	deleterious_low_confidence(0.01)	unknown(0)
TCGA-KN-8432-01	18	45368011	45368011	C	T	SMAD2	3'UTR		0.50		
TCGA-KN-8432-01	19	14139176	14139176	C	T	RLN3	Nonsense_Mutation	p.R54*	0.06		
TCGA-KN-8432-01	19	19626424	19626424	C	T	TSSK6	5'UTR		0.12		
TCGA-KN-8432-01	19	36632120	36632120	C	T	CAPNS1	Silent	p.I69I	0.39		
TCGA-KN-8432-01	19	44276195	44276195	C	T	KCNN4	Missense_Mutation	p.G259D	0.10	tolerated(0.12)	benign(0.405)
TCGA-KN-8432-01	19	55285024	55285024	G	C	KIR2DL1	Missense_Mutation	p.V104L	0.24	tolerated(1)	benign(0.001)
TCGA-KN-8432-01	19	57724079	57724079	C	T	ZNF264	Silent	p.P538P	0.05		
TCGA-KN-8432-01	1	154965424	154965424	C	G	FLAD1	Missense_Mutation	p.L559V	0.43	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8432-01	1	15545898	15545898	A	T	TMEM51	Missense_Mutation	p.N141Y	0.06	deleterious(0.01)	benign(0.22)
TCGA-KN-8432-01	1	155932493	155932493	G	A	ARHGEF2	Missense_Mutation	p.A331V	0.45	deleterious(0)	possibly_damaging(0.709)
TCGA-KN-8432-01	1	181021437	181021437	C	A	MR1	Missense_Mutation	p.A224D	0.04	deleterious(0)	probably_damaging(0.926)
TCGA-KN-8432-01	1	183885724	183885724	G	A	RGL1	Silent	p.T666T	0.04		
TCGA-KN-8432-01	1	18692186	18692186	C	T	IGSF21	Missense_Mutation	p.T337M	0.12	deleterious(0.02)	probably_damaging(0.97)
TCGA-KN-8432-01	1	200943959	200943959	G	A	KIF21B	Missense_Mutation	p.A1566V	0.04	deleterious(0)	benign(0.426)
TCGA-KN-8432-01	1	223465989	223465989	G	A	SUSD4	Silent	p.F51F	0.10		
TCGA-KN-8432-01	1	223936794	223936794	G	C	CAPN2	Silent	p.G261G	0.05		
TCGA-KN-8432-01	1	245025801	245025803	TCT	-	HNRNPU	In_Frame_Del	p.E279del	0.08		
TCGA-KN-8432-01	1	62380292	62380292	A	G	INADL	Missense_Mutation	p.I1176V	0.69	tolerated(0.96)	benign(0.002)
TCGA-KN-8432-01	1	66102278	66102278	T	G	LEPR	Missense_Mutation	p.N1026K	0.77	tolerated(0.14)	benign(0.003)
TCGA-KN-8432-01	20	35260999	35260999	T	A	SLA2	Missense_Mutation	p.R127S	0.08	tolerated(0.07)	possibly_damaging(0.744)
TCGA-KN-8432-01	20	46313215	46313215	C	T	SULF2	Missense_Mutation	p.R283H	0.10	deleterious(0)	possibly_damaging(0.828)
TCGA-KN-8432-01	21	45993747	45993747	G	A	KRTAP10-4	Missense_Mutation	p.E38K	0.28	deleterious(0.02)	possibly_damaging(0.829)
TCGA-KN-8432-01	21	46117243	46117243	G	A	KRTAP10-12	Missense_Mutation	p.A43T	0.10	tolerated(0.12)	benign(0.022)
TCGA-KN-8432-01	22	41863526	41863526	G	A	PHF5A	Missense_Mutation	p.R57C	0.08	deleterious(0)	probably_damaging(0.971)
TCGA-KN-8432-01	22	50875453	50875453	G	A	PPP6R2	Intron		0.04		
TCGA-KN-8432-01	2	169999257	169999257	T	C	LRP2	Silent	p.R4345R	0.05		
TCGA-KN-8432-01	2	219513452	219513452	C	G	ZNF142	Missense_Mutation	p.K393N	0.19	deleterious(0.01)	benign(0.307)
TCGA-KN-8432-01	2	233274094	233274094	C	T	ALPPL2	Silent	p.Y412Y	0.16		
TCGA-KN-8432-01	2	38818735	38818735	C	A	HNRNPLL	Missense_Mutation	p.G77V	0.78	deleterious(0)	probably_damaging(1)
TCGA-KN-8432-01	2	38978394	38978394	G	A	SRSF7	Missense_Mutation	p.S2L	0.36	deleterious_low_confidence(0.01)	benign(0.177)
TCGA-KN-8432-01	3	10183608	10183608	A	G	VHL	Missense_Mutation	p.E26G	0.21	tolerated_low_confidence(0.09)	benign(0.403)
TCGA-KN-8432-01	3	127323460	127323460	C	T	MCM2	Silent	p.R82R	0.05		
TCGA-KN-8432-01	3	52014444	52014444	A	C	ABHD14A	Missense_Mutation	p.T145P	0.78	tolerated(0.15)	benign(0.304)
TCGA-KN-8432-01	4	100503089	100503091	ATG	-	MTTP	In_Frame_Del	p.D31del	0.12		
TCGA-KN-8432-01	4	107237700	107237700	C	-	TBCK	Intron		0.09		
TCGA-KN-8432-01	4	164247528	164247528	G	C	NPY1R	Missense_Mutation	p.A60G	0.07	tolerated(0.23)	benign(0.02)
TCGA-KN-8432-01	4	48513002	48513002	C	G	FRYL	Splice_Site	p.X2716_splice	0.05		
TCGA-KN-8432-01	4	52861445	52861445	G	A	LRRC66	Silent	p.S581S	0.04		
TCGA-KN-8432-01	5	139928655	139928655	A	G	EIF4EBP3	Missense_Mutation	p.I90V	0.43	tolerated(0.64)	benign(0.001)
TCGA-KN-8432-01	5	174870227	174870227	C	T	DRD1	5'UTR		0.03		
TCGA-KN-8432-01	5	235341	235341	A	T	SDHA	Missense_Mutation	p.I383F	0.08	deleterious_low_confidence(0)	probably_damaging(1)
TCGA-KN-8432-01	5	94727088	94727088	G	A	FAM81B	5'UTR		0.16		
TCGA-KN-8432-01	6	112480083	112480083	C	G	LAMA4	Splice_Site	p.X557_splice	0.08		
TCGA-KN-8432-01	6	36938223	36938223	G	-	MTCH1	Frame_Shift_Del	p.F311Sfs*3	0.18		
TCGA-KN-8432-01	6	73787542	73787542	G	T	KCNQ5	Missense_Mutation	p.V284F	0.08	deleterious(0)	probably_damaging(0.998)
TCGA-KN-8432-01	7	17369578	17369578	T	A	AHR	Silent	p.S151S	0.31		
TCGA-KN-8432-01	7	50444370	50444370	C	T	IKZF1	Silent	p.G100G	0.08		
TCGA-KN-8432-01	7	74563945	74563945	C	A	GTF2IRD2B	Silent	p.A564A	0.17		
TCGA-KN-8432-01	8	143603450	143603450	G	A	BAI1	Missense_Mutation	p.R1050H	0.30	deleterious(0)	benign(0.001)
TCGA-KN-8432-01	8	95539559	95539559	C	T	KIAA1429	Missense_Mutation	p.E305K	0.06	deleterious(0)	probably_damaging(0.996)
TCGA-KN-8432-01	9	110068852	110068852	A	T	RAD23B	Missense_Mutation	p.S141C	0.39	deleterious(0.02)	unknown(0)
TCGA-KN-8432-01	9	121929186	121929186	G	A	BRINP1	3'UTR		0.12		
TCGA-KN-8432-01	9	123452248	123452248	G	T	MEGF9	Intron		0.03		
TCGA-KN-8432-01	9	12695641	12695641	G	A	TYRP1	Missense_Mutation	p.G171E	0.05	deleterious(0.01)	probably_damaging(0.931)
TCGA-KN-8432-01	9	27109515	27109515	C	G	TEK	5'UTR		0.06		
TCGA-KN-8432-01	9	84303155	84303155	T	A	TLE1	Translation_Start_Site	p.M1?	0.42	tolerated_low_confidence(0.05)	benign(0.144)
TCGA-KN-8432-01	9	84303156	84303156	C	T	TLE1	5'UTR		0.42		
TCGA-KN-8432-01	9	93375414	93375414	G	A	DIRAS2	3'UTR		0.11		
TCGA-KN-8432-01	X	102007233	102007233	A	T	BHLHB9	3'UTR		0.08		
TCGA-KN-8432-01	X	152158744	152158744	T	A	PNMA5	3'UTR		0.11		
TCGA-KN-8432-01	X	24075766	24075766	A	G	EIF2S3	Missense_Mutation	p.D93G	0.08	tolerated(0.14)	benign(0.005)
TCGA-KN-8432-01	X	37028121	37028121	C	T	FAM47C	Silent	p.L546L	0.05		
TCGA-KN-8432-01	X	54837700	54837700	G	A	MAGED2	Silent	p.K288K	0.36		
TCGA-KN-8433-01	10	101969426	101969426	G	A	CHUK	Nonsense_Mutation	p.Q352*	0.48		
TCGA-KN-8433-01	10	105762029	105762030	-	A	SLK	Frame_Shift_Ins	p.T367Nfs*4	0.25		
TCGA-KN-8433-01	12	72067994	72067994	A	T	THAP2	Missense_Mutation	p.D28V	0.18	tolerated(0.17)	probably_damaging(0.998)
TCGA-KN-8433-01	14	102910140	102910140	A	G	TECPR2	Missense_Mutation	p.E970G	0.08	deleterious(0)	probably_damaging(0.952)
TCGA-KN-8433-01	14	106368513	106368513	G	A	IGHD5-12	Missense_Mutation	p.T6M	0.32		unknown(0)
TCGA-KN-8433-01	17	3917706	3917706	T	A	ZZEF1	Missense_Mutation	p.D2750V	0.48	deleterious(0)	probably_damaging(1)
TCGA-KN-8433-01	17	7579699	7579699	C	A	TP53	Splice_Site	p.X32_splice	0.43		
TCGA-KN-8433-01	19	12917591	12917591	A	T	RNASEH2A	Missense_Mutation	p.E35V	0.25	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8433-01	19	13397774	13397774	G	T	CACNA1A	Missense_Mutation	p.N1032K	0.39		benign(0.005)
TCGA-KN-8433-01	19	34818401	34818401	C	T	KIAA0355	Nonsense_Mutation	p.Q261*	0.08		
TCGA-KN-8433-01	19	36642385	36642385	T	C	COX7A1	Missense_Mutation	p.T56A	0.04	deleterious(0)	probably_damaging(0.978)
TCGA-KN-8433-01	20	35262937	35262937	G	A	SLA2	Silent	p.A49A	0.21		
TCGA-KN-8433-01	20	45607183	45607183	G	T	EYA2	Intron		0.14		
TCGA-KN-8433-01	2	166532972	166532972	C	T	CSRNP3	Missense_Mutation	p.R187C	0.05	deleterious(0)	probably_damaging(0.997)
TCGA-KN-8433-01	3	109129037	109129037	C	T	RP11-702L6.4	RNA		0.07		
TCGA-KN-8433-01	3	167245753	167245753	A	T	WDR49	Missense_Mutation	p.I468K	0.05	tolerated(0.19)	possibly_damaging(0.798)
TCGA-KN-8433-01	4	44624415	44624415	C	T	YIPF7	3'UTR		0.22		
TCGA-KN-8433-01	5	45262026	45262026	T	AA	HCN1	Frame_Shift_Ins	p.L890Ffs*37	0.42		
TCGA-KN-8433-01	6	45405707	45405707	A	G	RUNX2	Missense_Mutation	p.T202A	0.32	deleterious(0.03)	probably_damaging(0.986)
TCGA-KN-8433-01	6	72974700	72974700	A	G	RIMS1	Missense_Mutation	p.T1047A	0.07	deleterious(0.05)	benign(0.013)
TCGA-KN-8433-01	7	89937126	89937126	G	T	C7orf63	Missense_Mutation	p.W836C	0.06	deleterious(0)	probably_damaging(1)
TCGA-KN-8433-01	8	144890886	144890886	G	A	SCRIB	Nonsense_Mutation	p.Q670*	0.06		
TCGA-KN-8433-01	8	87410805	87410805	A	C	WWP1	Missense_Mutation	p.E159D	0.29	tolerated(0.35)	benign(0.11)
TCGA-KN-8433-01	9	123783821	123783821	T	C	C5	Missense_Mutation	p.N423S	0.58	deleterious(0)	possibly_damaging(0.878)
TCGA-KN-8433-01	X	115305653	115305653	C	T	AGTR2	3'UTR		0.12		
TCGA-KN-8433-01	X	120182071	120182071	C	T	GLUD2	Missense_Mutation	p.P178L	0.33	deleterious(0.02)	probably_damaging(0.999)
TCGA-KN-8434-01	11	119024755	119024755	G	A	ABCG4	Silent	p.K86K	0.14		
TCGA-KN-8434-01	11	64600192	64600192	C	A	CDC42BPG	Silent	p.R963R	0.49		
TCGA-KN-8434-01	12	108154350	108154351	GG	-	PRDM4	5'UTR		0.30		
TCGA-KN-8434-01	12	48578965	48578965	G	A	C12orf68	3'UTR		0.44		
TCGA-KN-8434-01	12	54982196	54982196	G	A	PPP1R1A	Missense_Mutation	p.A26V	0.07	tolerated(0.31)	probably_damaging(0.941)
TCGA-KN-8434-01	13	99476685	99476685	T	C	DOCK9	Silent	p.E1699E	0.07		
TCGA-KN-8434-01	16	17235168	17235168	G	A	XYLT1	Missense_Mutation	p.R477C	0.44	deleterious(0)	probably_damaging(1)
TCGA-KN-8434-01	16	2139968	2139968	G	A	PKD1	Silent	p.T4224T	0.06		
TCGA-KN-8434-01	17	7534020	7534020	C	T	SHBG	Nonsense_Mutation	p.R76*	0.65		
TCGA-KN-8434-01	17	7578507	7578507	G	C	TP53	Missense_Mutation	p.C141W	0.57	deleterious(0)	probably_damaging(1)
TCGA-KN-8434-01	18	2937725	2937725	G	A	LPIN2	Missense_Mutation	p.P378L	0.40	deleterious(0.03)	benign(0.002)
TCGA-KN-8434-01	19	14024412	14024412	G	C	CC2D1A	Missense_Mutation	p.A237P	0.25	tolerated(0.21)	benign(0.323)
TCGA-KN-8434-01	19	36035921	36035921	G	A	GAPDHS	Intron		0.38		
TCGA-KN-8434-01	1	112029261	112029261	G	T	ADORA3	Missense_Mutation	p.N273K	0.56	tolerated_low_confidence(0.07)	probably_damaging(0.996)
TCGA-KN-8434-01	1	1375654	1375654	G	A	VWA1	3'UTR		0.52		
TCGA-KN-8434-01	22	28193289	28193289	C	T	MN1	Silent	p.S1081S	0.30		
TCGA-KN-8434-01	2	32641045	32641045	G	A	BIRC6	Missense_Mutation	p.D896N	0.06		benign(0.02)
TCGA-KN-8434-01	2	86831274	86831274	G	A	RNF103	Nonsense_Mutation	p.Q584*	0.09		
TCGA-KN-8434-01	3	17413592	17413592	C	T	TBC1D5	Missense_Mutation	p.E324K	0.38	deleterious(0)	probably_damaging(0.973)
TCGA-KN-8434-01	3	196613140	196613142	CTC	-	SENP5	In_Frame_Del	p.P364del	0.40		
TCGA-KN-8434-01	3	48669762	48669762	G	A	SLC26A6	Silent	p.N167N	0.38		
TCGA-KN-8434-01	4	183594221	183594221	G	A	TENM3	Missense_Mutation	p.R392Q	0.05	tolerated(0.69)	benign(0.238)
TCGA-KN-8434-01	5	169533097	169533097	C	T	FOXI1	Missense_Mutation	p.R46W	0.46	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8434-01	6	32156192	32156192	C	T	PBX2	Missense_Mutation	p.G129R	0.08	tolerated(0.27)	benign(0.327)
TCGA-KN-8434-01	7	70231281	70231281	C	T	AUTS2	Silent	p.I550I	0.34		
TCGA-KN-8434-01	7	82544701	82544701	A	T	PCLO	Missense_Mutation	p.S4201T	0.15		unknown(0)
TCGA-KN-8434-01	8	57358325	57358325	G	A	PENK	Intron		0.06		
TCGA-KN-8434-01	9	111625994	111625994	C	T	ACTL7A	3'UTR		0.13		
TCGA-KN-8434-01	9	131565713	131565713	C	T	TBC1D13	Missense_Mutation	p.A243V	0.41	deleterious(0.03)	possibly_damaging(0.651)
TCGA-KN-8434-01	9	35044753	35044753	G	A	C9orf131	Silent	p.V709V	0.57		
TCGA-KN-8434-01	X	130409464	130409464	G	A	IGSF1	Missense_Mutation	p.L1063F	0.15	deleterious(0.01)	probably_damaging(1)
TCGA-KN-8434-01	X	48418349	48418349	C	A	TBC1D25	Silent	p.A351A	0.10		
TCGA-KN-8434-01	X	48652278	48652278	C	G	GATA1	Missense_Mutation	p.R317G	0.05	deleterious(0.04)	probably_damaging(0.931)
TCGA-KN-8435-01	10	133955457	133955457	C	T	JAKMIP3	Missense_Mutation	p.R503W	0.95	deleterious(0.01)	probably_damaging(0.992)
TCGA-KN-8435-01	10	46122460	46122460	C	A	ZFAND4	Missense_Mutation	p.V271F	0.05	deleterious(0)	possibly_damaging(0.766)
TCGA-KN-8435-01	11	108126988	108126988	G	T	ATM	Missense_Mutation	p.G724V	0.31	deleterious(0)	possibly_damaging(0.887)
TCGA-KN-8435-01	11	6816462	6816462	T	G	OR6A2	Missense_Mutation	p.I160L	0.27	tolerated(0.11)	possibly_damaging(0.883)
TCGA-KN-8435-01	12	122958438	122958438	G	A	ZCCHC8	Missense_Mutation	p.T577M	0.06	tolerated(0.34)	benign(0)
TCGA-KN-8435-01	12	48379322	48379322	G	A	COL2A1	Missense_Mutation	p.P577S	0.50		possibly_damaging(0.698)
TCGA-KN-8435-01	14	103802243	103802243	T	C	EIF5	Missense_Mutation	p.Y16H	0.46	deleterious(0.02)	possibly_damaging(0.854)
TCGA-KN-8435-01	14	60585201	60585201	T	C	PCNXL4	Missense_Mutation	p.V344A	0.41	tolerated(1)	benign(0.002)
TCGA-KN-8435-01	14	96790278	96790278	C	T	ATG2B	Missense_Mutation	p.G832E	0.07	tolerated(0.11)	probably_damaging(0.996)
TCGA-KN-8435-01	15	74467546	74467546	G	T	ISLR	Missense_Mutation	p.S116I	0.09	tolerated(0.05)	possibly_damaging(0.602)
TCGA-KN-8435-01	17	28656457	28656457	T	C	TMIGD1	Missense_Mutation	p.N58S	0.88	deleterious(0.01)	possibly_damaging(0.905)
TCGA-KN-8435-01	19	17036078	17036078	A	G	CPAMD8	Silent	p.L1206L	0.44		
TCGA-KN-8435-01	19	36347929	36347929	G	T	KIRREL2	5'UTR		0.43		
TCGA-KN-8435-01	1	110882695	110882713	GGCGGCCAGAGGACGCGCG	-	RBM15	Frame_Shift_Del	p.E226Sfs*14	0.49		
TCGA-KN-8435-01	1	161677131	161677131	T	C	FCRLA	Missense_Mutation	p.L43P	0.87	deleterious(0.02)	benign(0.071)
TCGA-KN-8435-01	1	6641321	6641321	G	T	ZBTB48	Nonsense_Mutation	p.E218*	0.14		
TCGA-KN-8435-01	20	32258501	32258501	C	-	NECAB3	Frame_Shift_Del	p.H85Ifs*6	0.36		
TCGA-KN-8435-01	20	5099481	5099481	C	G	PCNA	Missense_Mutation	p.E85Q	0.50	deleterious(0)	benign(0.174)
TCGA-KN-8435-01	22	24105461	24105461	A	G	C22orf15	5'UTR		0.23		
TCGA-KN-8435-01	2	150327546	150327546	G	A	LYPD6	3'UTR		0.90		
TCGA-KN-8435-01	2	189873717	189873717	G	A	COL3A1	Missense_Mutation	p.G1198D	0.90		unknown(0)
TCGA-KN-8435-01	3	111710501	111710501	C	A	ABHD10	Missense_Mutation	p.A285E	0.42	tolerated(1)	benign(0.009)
TCGA-KN-8435-01	3	33686372	33686372	A	T	CLASP2	Missense_Mutation	p.S247T	0.45	tolerated(0.09)	benign(0.41)
TCGA-KN-8435-01	4	2065597	2065597	C	T	NAT8L	Missense_Mutation	p.R218C	0.47	deleterious(0.01)	probably_damaging(0.971)
TCGA-KN-8435-01	6	74520746	74520746	A	C	CD109	Missense_Mutation	p.E1193A	0.41	tolerated(0.49)	benign(0.309)
TCGA-KN-8435-01	7	27204514	27204514	T	C	HOXA9	Missense_Mutation	p.K188R	0.38	deleterious(0.02)	probably_damaging(0.989)
TCGA-KN-8435-01	7	30634517	30634517	A	G	GARS	5'UTR		0.19		
TCGA-KN-8435-01	7	6452490	6452490	A	T	DAGLB	Missense_Mutation	p.D507E	0.06	tolerated(0.07)	probably_damaging(0.996)
TCGA-KN-8435-01	8	41790917	41790917	C	T	KAT6A	Silent	p.Q1607Q	0.06		
TCGA-KN-8435-01	9	82187641	82187641	T	C	TLE4	5'UTR		0.42		
TCGA-KN-8435-01	9	95991992	95991992	C	G	WNK2	Silent	p.T232T	0.44		
TCGA-KN-8435-01	X	128927925	128927925	C	T	SASH3	3'UTR		0.06		
TCGA-KN-8436-01	10	43882268	43882268	T	A	HNRNPF	Missense_Mutation	p.R355S	0.19	deleterious(0.05)	possibly_damaging(0.618)
TCGA-KN-8436-01	11	66335107	66335107	C	T	CTSF	Silent	p.E113E	0.08		
TCGA-KN-8436-01	12	31540710	31540710	G	A	DENND5B	Missense_Mutation	p.L1218F	0.40	deleterious(0)	probably_damaging(1)
TCGA-KN-8436-01	12	32136955	32136955	T	A	KIAA1551	Silent	p.P1022P	0.49		
TCGA-KN-8436-01	12	57112953	57112954	-	A	NACA	Intron		0.29		
TCGA-KN-8436-01	12	80655788	80655788	C	T	OTOGL	Silent	p.H634H	0.19		
TCGA-KN-8436-01	13	24844995	24844995	G	T	SPATA13	Intron		0.46		
TCGA-KN-8436-01	13	52586578	52586578	G	T	ALG11	Missense_Mutation	p.W8C	0.09	deleterious_low_confidence(0.03)	possibly_damaging(0.525)
TCGA-KN-8436-01	14	51196406	51196406	C	T	NIN	Silent	p.P1971P	0.42		
TCGA-KN-8436-01	16	67470735	67470735	C	A	HSD11B2	Missense_Mutation	p.F349L	0.40	tolerated(0.18)	possibly_damaging(0.488)
TCGA-KN-8436-01	17	7574015	7574015	A	T	TP53	Missense_Mutation	p.F338I	0.83	deleterious(0)	possibly_damaging(0.857)
TCGA-KN-8436-01	18	2703826	2703826	C	A	SMCHD1	Missense_Mutation	p.P595H	0.48	deleterious(0)	probably_damaging(0.999)
TCGA-KN-8436-01	1	21978053	21978053	C	T	RAP1GAP	Intron		0.07		
TCGA-KN-8436-01	1	240371352	240371352	T	A	FMN2	Silent	p.L1080L	0.28		
TCGA-KN-8436-01	1	8922983	8922983	G	A	ENO1	Nonsense_Mutation	p.R400*	0.07		
TCGA-KN-8436-01	22	21334338	21334338	T	C	AIFM3	Missense_Mutation	p.M561T	0.08	deleterious(0)	benign(0.356)
TCGA-KN-8436-01	2	128945096	128945096	A	G	UGGT1	Missense_Mutation	p.D1517G	0.05	deleterious(0)	probably_damaging(1)
TCGA-KN-8436-01	3	48681698	48681698	G	A	CELSR3	Missense_Mutation	p.R2706C	0.24	deleterious(0)	possibly_damaging(0.883)
TCGA-KN-8436-01	4	146044440	146044440	A	G	ABCE1	Missense_Mutation	p.Y483C	0.49	deleterious(0)	probably_damaging(1)
TCGA-KN-8436-01	4	187584589	187584589	G	-	FAT1	Frame_Shift_Del	p.M1149Wfs*55	0.30		
TCGA-KN-8436-01	5	1214087	1214087	C	T	SLC6A19	Missense_Mutation	p.P265L	0.57	deleterious(0.01)	possibly_damaging(0.537)
TCGA-KN-8436-01	5	131008278	131008278	T	A	FNIP1	Missense_Mutation	p.Q620L	0.44	tolerated(0.21)	benign(0.171)
TCGA-KN-8436-01	5	36680556	36680556	G	A	SLC1A3	Missense_Mutation	p.R385H	0.45	deleterious(0)	probably_damaging(0.967)
TCGA-KN-8436-01	5	40835291	40835296	GCTTCT	AA	RPL37	5'UTR		0.31		
TCGA-KN-8436-01	8	28747618	28747618	G	A	INTS9	5'Flank		1.00		
TCGA-KN-8436-01	9	104432589	104432589	C	A	GRIN3A	Missense_Mutation	p.G702V	0.85	deleterious(0)	probably_damaging(1)
TCGA-KN-8436-01	9	138641963	138641963	G	A	KCNT1	Missense_Mutation	p.V92I	0.20	deleterious(0.05)	benign(0.245)
TCGA-KN-8436-01	X	153662709	153662745	CCAGTGGGAGGACCTGACTCCCCTCACCTTTGGGGTG	-	ATP6AP1	Frame_Shift_Del	p.Q281Rfs*5	0.97		
TCGA-KN-8437-01	10	72293731	72293731	C	G	PALD1	Silent	p.L308L	0.43		
TCGA-KN-8437-01	10	74034518	74034518	C	A	DDIT4	Missense_Mutation	p.H91N	0.15	tolerated(0.37)	benign(0.072)
TCGA-KN-8437-01	16	31073370	31073370	C	G	ZNF668	Silent	p.S316S	0.42		
TCGA-KN-8437-01	17	26942000	26942000	A	G	KIAA0100	3'UTR		0.07		
TCGA-KN-8437-01	18	22930910	22930910	T	A	ZNF521	Translation_Start_Site	p.M1?	0.14	deleterious_low_confidence(0)	benign(0)
TCGA-KN-8437-01	18	22930911	22930911	C	A	ZNF521	Intron		0.14		
TCGA-KN-8437-01	1	11174395	11174395	A	C	MTOR	Missense_Mutation	p.L2427R	0.31	deleterious(0)	probably_damaging(0.99)
TCGA-KN-8437-01	1	32741193	32741193	G	A	LCK	Missense_Mutation	p.R134H	0.06	deleterious(0)	probably_damaging(0.989)
TCGA-KN-8437-01	22	18900771	18900771	C	T	PRODH	Missense_Mutation	p.G574S	0.20	deleterious(0.03)	possibly_damaging(0.506)
TCGA-KN-8437-01	5	37221454	37221454	T	A	C5orf42	Silent	p.L906L	0.38		
TCGA-KN-8437-01	8	71619240	71619240	A	G	XKR9	Silent	p.E115E	0.06		
TCGA-KO-8403-01	11	1075670	1075670	C	T	MUC2	Silent	p.H32H	0.32		
TCGA-KO-8403-01	11	117307845	117307845	G	A	DSCAML1	Silent	p.Y1631Y	0.30		
TCGA-KO-8403-01	11	216703	216706	TGTC	-	SIRT3	Frame_Shift_Del	p.D398Nfs*10	0.45		
TCGA-KO-8403-01	11	62389384	62389384	G	A	B3GAT3	Silent	p.Y12Y	0.12		
TCGA-KO-8403-01	12	6702730	6702730	T	C	CHD4	Missense_Mutation	p.N789S	0.29	deleterious(0)	possibly_damaging(0.874)
TCGA-KO-8403-01	14	61186805	61186805	T	A	SIX4	Missense_Mutation	p.T408S	0.37	tolerated(0.16)	benign(0.077)
TCGA-KO-8403-01	17	7577139	7577139	G	A	TP53	Missense_Mutation	p.R267W	0.43	tolerated(0.05)	possibly_damaging(0.728)
TCGA-KO-8403-01	17	7577532	7577532	G	A	TP53	Missense_Mutation	p.P250L	0.07	deleterious(0)	probably_damaging(1)
TCGA-KO-8403-01	18	44561017	44561017	G	T	TCEB3B	Missense_Mutation	p.L207M	0.30	tolerated(0.07)	probably_damaging(0.982)
TCGA-KO-8403-01	19	42730692	42730692	C	G	ZNF526	3'UTR		0.29		
TCGA-KO-8403-01	19	49656872	49656872	C	T	HRC	Silent	p.E541E	0.07		
TCGA-KO-8403-01	19	50360994	50360996	CAA	-	PTOV1	In_Frame_Del	p.N255del	0.11		
TCGA-KO-8403-01	19	58004570	58004570	A	C	ZNF419	Missense_Mutation	p.K216N	0.35	tolerated(0.18)	benign(0.009)
TCGA-KO-8403-01	19	58868487	58868487	C	T	ZNF497	Missense_Mutation	p.R172H	0.32	tolerated(0.35)	possibly_damaging(0.806)
TCGA-KO-8403-01	19	9869291	9869291	G	C	ZNF846	Missense_Mutation	p.N154K	0.30	tolerated(0.59)	benign(0.074)
TCGA-KO-8403-01	1	14105033	14105033	C	T	PRDM2	Missense_Mutation	p.P248L	0.62		benign(0.065)
TCGA-KO-8403-01	1	34043016	34043016	C	T	CSMD2	Missense_Mutation	p.G2488R	0.19	deleterious(0)	probably_damaging(0.997)
TCGA-KO-8403-01	22	21982830	21982830	C	T	YDJC	Silent	p.R283R	0.22		
TCGA-KO-8403-01	22	32797733	32797733	C	A	RTCB	Splice_Site	p.X166_splice	0.47		
TCGA-KO-8403-01	2	166900204	166900204	A	T	SCN1A	Missense_Mutation	p.I673K	0.66	deleterious(0.03)	possibly_damaging(0.698)
TCGA-KO-8403-01	2	70162518	70162518	A	G	MXD1	Missense_Mutation	p.K80R	0.05	deleterious(0.02)	probably_damaging(0.999)
TCGA-KO-8403-01	3	11340174	11340174	C	T	ATG7	Missense_Mutation	p.A2V	0.31	deleterious_low_confidence(0)	benign(0.001)
TCGA-KO-8403-01	3	169824724	169824724	T	C	PHC3	Silent	p.E788E	0.06		
TCGA-KO-8403-01	3	57431084	57431084	G	T	DNAH12	Silent	p.L1391L	0.05		
TCGA-KO-8403-01	4	89668864	89668864	G	T	FAM13A	Missense_Mutation	p.P767H	0.06	deleterious(0)	probably_damaging(1)
TCGA-KO-8403-01	5	17276072	17276072	C	A	BASP1	3'UTR		0.05		
TCGA-KO-8403-01	5	180377222	180377222	G	A	BTNL8	Missense_Mutation	p.R394H	0.04	tolerated(1)	benign(0.002)
TCGA-KO-8403-01	6	122768108	122768108	A	G	SERINC1	Missense_Mutation	p.L346P	0.05	tolerated(0.06)	probably_damaging(0.992)
TCGA-KO-8403-01	6	44241035	44241035	T	C	TMEM151B	Missense_Mutation	p.L123S	0.09	deleterious(0)	probably_damaging(0.997)
TCGA-KO-8403-01	9	131038665	131038665	A	G	SWI5	Missense_Mutation	p.T81A	0.08	deleterious_low_confidence(0)	benign(0.036)
TCGA-KO-8403-01	9	88897335	88897335	C	A	ISCA1	Silent	p.V13V	0.27		
TCGA-KO-8403-01	9	91618261	91618261	G	A	S1PR3	3'UTR		0.29		
TCGA-KO-8404-01	11	5410780	5410780	T	A	OR51M1	Missense_Mutation	p.I51N	0.27	deleterious(0)	possibly_damaging(0.851)
TCGA-KO-8404-01	11	6048328	6048328	T	C	OR56A1	Missense_Mutation	p.R203G	0.65	deleterious(0.05)	probably_damaging(0.994)
TCGA-KO-8404-01	11	66555695	66555696	-	A	C11orf80	Frame_Shift_Ins	p.S197Ifs*15	0.20		
TCGA-KO-8404-01	11	9042405	9042405	C	T	SCUBE2	3'Flank		0.56		
TCGA-KO-8404-01	12	111160464	111160464	C	T	PPP1CC	Missense_Mutation	p.R187Q	0.25	tolerated_low_confidence(0.13)	benign(0.002)
TCGA-KO-8404-01	12	25147251	25147251	C	T	C12orf77	Missense_Mutation	p.A140T	0.15	deleterious_low_confidence(0)	possibly_damaging(0.908)
TCGA-KO-8404-01	12	48723878	48723878	G	T	H1FNT	3'UTR		0.21		
TCGA-KO-8404-01	12	53189775	53189775	C	T	KRT3	Missense_Mutation	p.G18S	0.26	tolerated(0.25)	unknown(0)
TCGA-KO-8404-01	12	57485373	57485373	G	T	NAB2	Silent	p.R183R	0.18		
TCGA-KO-8404-01	13	49039350	49039359	TTGTCACCAA	-	RB1	Frame_Shift_Del	p.L779Yfs*28	0.59		
TCGA-KO-8404-01	14	50244621	50244621	G	A	KLHDC2	Missense_Mutation	p.G139E	0.33	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8404-01	14	74004001	74004001	A	G	ACOT1	5'UTR		0.56		
TCGA-KO-8404-01	14	88737238	88737238	G	A	KCNK10	Intron		0.25		
TCGA-KO-8404-01	15	39892862	39892862	C	A	FSIP1	3'UTR		0.50		
TCGA-KO-8404-01	15	68624721	68624721	G	A	ITGA11	Silent	p.N507N	0.25		
TCGA-KO-8404-01	16	20497990	20497990	G	A	ACSM2A	Missense_Mutation	p.R575H	0.36	tolerated(0.08)	benign(0.005)
TCGA-KO-8404-01	16	2512477	2512477	G	A	C16orf59	Missense_Mutation	p.R271Q	0.07	tolerated(0.52)	benign(0.008)
TCGA-KO-8404-01	16	4029168	4029168	G	A	ADCY9	Silent	p.P876P	0.38		
TCGA-KO-8404-01	16	50825539	50825539	G	A	CYLD	Missense_Mutation	p.V727I	0.04	tolerated(0.12)	benign(0.061)
TCGA-KO-8404-01	16	83941751	83941752	-	A	MLYCD	Frame_Shift_Ins	p.N223Kfs*38	0.46		
TCGA-KO-8404-01	17	5012951	5012951	C	T	ZNF232	Missense_Mutation	p.R79H	0.69	tolerated(0.06)	benign(0.151)
TCGA-KO-8404-01	17	71375627	71375627	C	A	SDK2	Silent	p.G1608G	0.71		
TCGA-KO-8404-01	17	7577609	7577609	C	T	TP53	Splice_Site	p.X225_splice	0.73		
TCGA-KO-8404-01	19	17972198	17972198	G	A	RPL18A	Missense_Mutation	p.V39I	0.40	tolerated(0.14)	benign(0.146)
TCGA-KO-8404-01	19	18507174	18507174	C	T	LRRC25	Silent	p.E200E	0.35		
TCGA-KO-8404-01	19	29698692	29698692	C	G	UQCRFS1	Missense_Mutation	p.R196S	0.26	deleterious(0)	probably_damaging(1)
TCGA-KO-8404-01	19	49001439	49001439	C	A	LMTK3	Nonsense_Mutation	p.E992*	0.41		
TCGA-KO-8404-01	19	50662801	50662801	G	A	IZUMO2	Missense_Mutation	p.A115V	0.42	deleterious(0.04)	possibly_damaging(0.695)
TCGA-KO-8404-01	19	53343393	53343393	G	A	ZNF468	3'UTR		0.22		
TCGA-KO-8404-01	1	10527276	10527276	T	C	DFFA	Missense_Mutation	p.I138V	0.66	deleterious(0.04)	possibly_damaging(0.536)
TCGA-KO-8404-01	1	1223338	1223338	G	A	SCNN1D	Missense_Mutation	p.G528E	0.09	deleterious(0.01)	probably_damaging(0.953)
TCGA-KO-8404-01	1	1389871	1389871	C	T	ATAD3C	Silent	p.H123H	0.40		
TCGA-KO-8404-01	1	172037991	172037991	G	A	DNM3	Silent	p.T456T	0.37		
TCGA-KO-8404-01	1	94639723	94639723	C	T	ARHGAP29	Nonsense_Mutation	p.W1163*	0.33		
TCGA-KO-8404-01	20	33874426	33874426	C	T	FAM83C	Missense_Mutation	p.R719Q	0.52	deleterious_low_confidence(0)	possibly_damaging(0.836)
TCGA-KO-8404-01	20	4707722	4707725	AGAA	-	PRND	3'UTR		0.61		
TCGA-KO-8404-01	20	56087702	56087702	A	G	CTCFL	Silent	p.T479T	0.21		
TCGA-KO-8404-01	22	38877304	38877304	A	-	KDELR3	Frame_Shift_Del	p.I147*	0.30		
TCGA-KO-8404-01	2	201462175	201462175	G	A	AOX1	Missense_Mutation	p.V86I	0.06	tolerated(0.1)	benign(0.047)
TCGA-KO-8404-01	2	219695480	219695480	C	A	PRKAG3	Missense_Mutation	p.G73V	0.09	tolerated_low_confidence(0.06)	benign(0.092)
TCGA-KO-8404-01	2	44139675	44139675	A	T	LRPPRC	Missense_Mutation	p.N1057K	0.69	tolerated(1)	benign(0)
TCGA-KO-8404-01	3	121659851	121659851	C	A	SLC15A2	Silent	p.L729L	0.28		
TCGA-KO-8404-01	3	122123174	122123174	G	A	FAM162A	Missense_Mutation	p.R76H	0.31	tolerated(0.15)	probably_damaging(0.912)
TCGA-KO-8404-01	3	130098678	130098678	G	C	COL6A5	Missense_Mutation	p.R362P	0.33	deleterious(0)	probably_damaging(0.99)
TCGA-KO-8404-01	3	149245708	149245708	G	A	WWTR1	Missense_Mutation	p.P274S	0.69	tolerated(1)	benign(0)
TCGA-KO-8404-01	3	9987897	9987897	G	A	PRRT3	3'UTR		0.44		
TCGA-KO-8404-01	4	106162489	106162489	T	G	TET2	Intron		0.10		
TCGA-KO-8404-01	4	147795877	147795877	C	T	TTC29	Missense_Mutation	p.A264T	0.04	deleterious(0.02)	possibly_damaging(0.831)
TCGA-KO-8404-01	4	41985286	41985286	A	G	DCAF4L1	3'UTR		0.18		
TCGA-KO-8404-01	4	91229575	91229575	C	T	CCSER1	Missense_Mutation	p.S47F	0.11	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8404-01	5	140214663	140214663	T	C	PCDHA7	Missense_Mutation	p.V232A	0.15	deleterious_low_confidence(0)	possibly_damaging(0.666)
TCGA-KO-8404-01	5	151202298	151202298	A	C	GLRA1	Missense_Mutation	p.I437S	0.20	deleterious(0)	possibly_damaging(0.772)
TCGA-KO-8404-01	5	467164	467164	G	C	EXOC3	3'UTR		0.38		
TCGA-KO-8404-01	6	28542931	28542931	A	T	SCAND3	Silent	p.T517T	0.22		
TCGA-KO-8404-01	6	31122478	31122478	A	G	CCHCR1	Missense_Mutation	p.L199P	0.06	tolerated(0.33)	possibly_damaging(0.555)
TCGA-KO-8404-01	6	33405554	33405554	A	C	SYNGAP1	Missense_Mutation	p.Y291S	0.56	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8404-01	7	157041098	157041098	G	T	UBE3C	Missense_Mutation	p.A840S	0.41	tolerated(0.09)	possibly_damaging(0.687)
TCGA-KO-8404-01	7	157041099	157041099	C	T	UBE3C	Missense_Mutation	p.A840V	0.42	deleterious(0)	probably_damaging(0.981)
TCGA-KO-8404-01	7	97820153	97820153	C	T	LMTK2	Missense_Mutation	p.P371L	0.23	tolerated(1)	benign(0.047)
TCGA-KO-8404-01	8	2836315	2836315	G	T	CSMD1	Missense_Mutation	p.N2795K	0.64		possibly_damaging(0.805)
TCGA-KO-8404-01	9	18706839	18706839	C	T	ADAMTSL1	Nonsense_Mutation	p.Q557*	0.06		
TCGA-KO-8404-01	9	6536228	6536228	C	T	GLDC	Missense_Mutation	p.A892T	0.38	deleterious(0)	probably_damaging(0.96)
TCGA-KO-8404-01	X	14891641	14891641	G	T	MOSPD2	5'UTR		0.10		
TCGA-KO-8404-01	X	151870420	151870420	G	A	MAGEA6	3'UTR		0.05		
TCGA-KO-8404-01	X	155003431	155003431	T	C	SPRY3	5'UTR		0.06		
TCGA-KO-8404-01	X	53586462	53586462	G	T	HUWE1	Missense_Mutation	p.L2590I	0.69		benign(0.364)
TCGA-KO-8405-01	11	64664287	64664287	G	A	ATG2A	Silent	p.D1735D	0.05		
TCGA-KO-8405-01	15	42720229	42720229	G	A	ZNF106	Missense_Mutation	p.T1639I	0.11	deleterious(0)	possibly_damaging(0.776)
TCGA-KO-8405-01	17	43523003	43523003	C	G	PLEKHM1	Silent	p.L890L	0.19		
TCGA-KO-8405-01	19	15580372	15580372	G	A	PGLYRP2	Intron		0.45		
TCGA-KO-8405-01	19	38028153	38028153	C	G	ZNF793	Missense_Mutation	p.T198S	0.15	tolerated(1)	benign(0.001)
TCGA-KO-8405-01	1	16386095	16386095	G	A	FAM131C	Silent	p.V152V	0.17		
TCGA-KO-8405-01	1	8923329	8923329	T	A	ENO1	Missense_Mutation	p.I381F	0.18	deleterious_low_confidence(0)	probably_damaging(0.992)
TCGA-KO-8405-01	3	46399846	46399846	C	A	CCR2	Missense_Mutation	p.N276K	0.27	tolerated(0.1)	benign(0.125)
TCGA-KO-8405-01	7	73085354	73085354	A	G	VPS37D	Missense_Mutation	p.E135G	0.09	deleterious(0)	benign(0.383)
TCGA-KO-8405-01	7	99569434	99569434	T	C	AZGP1	Missense_Mutation	p.K91R	0.05	tolerated(0.26)	benign(0.053)
TCGA-KO-8405-01	9	136550314	136550314	C	A	SARDH	Splice_Site	p.X721_splice	0.08		
TCGA-KO-8405-01	9	84533280	84533280	C	A	SPATA31D5P	RNA		0.39		
TCGA-KO-8405-01	9	86327793	86327793	A	G	UBQLN1	5'Flank		0.15		
TCGA-KO-8405-01	9	90500243	90500243	C	G	SPATA31E1	Missense_Mutation	p.L281V	0.16	tolerated(0.3)	benign(0.113)
TCGA-KO-8405-01	X	19983778	19983778	T	A	CXorf23	Nonsense_Mutation	p.R220*	0.32		
TCGA-KO-8406-01	11	126284071	126284071	G	T	ST3GAL4	3'UTR		0.11		
TCGA-KO-8406-01	11	64326666	64326666	C	T	SLC22A11	Silent	p.S151S	0.05		
TCGA-KO-8406-01	11	66033395	66033395	G	A	KLC2	Missense_Mutation	p.R505H	0.35	deleterious(0.03)	benign(0.006)
TCGA-KO-8406-01	12	9315213	9315213	C	A	PZP	Missense_Mutation	p.S923I	0.07	deleterious(0.01)	benign(0.01)
TCGA-KO-8406-01	17	34009754	34009754	C	T	AP2B1	Missense_Mutation	p.P789S	0.07	deleterious(0.02)	benign(0.363)
TCGA-KO-8406-01	17	39140079	39140079	C	A	KRT40	Missense_Mutation	p.K149N	0.05	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8406-01	17	44096020	44096020	A	G	MAPT	Missense_Mutation	p.D680G	0.07	deleterious(0)	benign(0.301)
TCGA-KO-8406-01	19	10166291	10166291	G	A	C3P1	RNA		0.08		
TCGA-KO-8406-01	19	34895578	34895578	C	T	RP11-618P17.4	Missense_Mutation	p.P74S	0.32	tolerated(0.07)	probably_damaging(0.999)
TCGA-KO-8406-01	1	16259785	16259785	T	C	SPEN	Silent	p.A2350A	0.09		
TCGA-KO-8406-01	20	62200278	62200278	G	A	HELZ2	Missense_Mutation	p.P388L	0.06	tolerated(0.13)	benign(0.308)
TCGA-KO-8406-01	2	238269781	238269781	C	T	COL6A3	Missense_Mutation	p.G2065S	0.07		probably_damaging(1)
TCGA-KO-8406-01	3	113375013	113375013	A	T	KIAA2018	Missense_Mutation	p.L1839H	0.03		possibly_damaging(0.886)
TCGA-KO-8406-01	3	12475649	12475649	G	A	PPARG	3'UTR		0.41		
TCGA-KO-8406-01	3	195256683	195256683	C	T	PPP1R2	Missense_Mutation	p.D48N	0.45	deleterious(0)	probably_damaging(0.998)
TCGA-KO-8406-01	5	140228893	140228893	A	C	PCDHA9	Missense_Mutation	p.E271D	0.15	tolerated_low_confidence(0.1)	possibly_damaging(0.67)
TCGA-KO-8406-01	6	139164271	139164271	G	A	ECT2L	Silent	p.T166T	0.07		
TCGA-KO-8406-01	6	90353740	90353740	G	T	MDN1	Missense_Mutation	p.A5592D	0.07		unknown(0)
TCGA-KO-8406-01	7	47408617	47408617	G	T	TNS3	Silent	p.G542G	0.05		
TCGA-KO-8406-01	9	139262146	139262146	C	T	CARD9	Silent	p.A404A	0.13		
TCGA-KO-8407-01	11	32954825	32954825	A	T	QSER1	Missense_Mutation	p.Y545F	0.43	deleterious(0.04)	benign(0.025)
TCGA-KO-8407-01	12	112082340	112082340	G	A	BRAP	Missense_Mutation	p.A481V	0.05	tolerated(0.24)	benign(0.004)
TCGA-KO-8407-01	12	41967775	41967775	G	A	PDZRN4	3'UTR		0.19		
TCGA-KO-8407-01	15	44881589	44881589	G	A	SPG11	Silent	p.V1589V	0.26		
TCGA-KO-8407-01	17	47893250	47893250	C	A	KAT7	Missense_Mutation	p.A313E	0.11	deleterious(0)	possibly_damaging(0.78)
TCGA-KO-8407-01	19	10078060	10078060	C	T	COL5A3	Missense_Mutation	p.R1474H	0.45		unknown(0)
TCGA-KO-8407-01	19	55107718	55107718	C	T	LILRA1	Silent	p.N341N	0.09		
TCGA-KO-8407-01	1	1268041	1268041	C	T	TAS1R3	Missense_Mutation	p.T377M	0.23	tolerated(0.08)	benign(0.293)
TCGA-KO-8407-01	1	171753605	171753605	A	G	METTL13	Silent	p.K293K	0.09		
TCGA-KO-8407-01	1	17331882	17331882	A	G	ATP13A2	Missense_Mutation	p.I92T	0.09	tolerated(1)	benign(0.008)
TCGA-KO-8407-01	1	247200874	247200874	G	C	ZNF670	Silent	p.S349S	0.05		
TCGA-KO-8407-01	20	37356927	37356927	C	T	SLC32A1	Missense_Mutation	p.S408L	0.05	tolerated(0.39)	benign(0.017)
TCGA-KO-8407-01	21	30409627	30409627	A	G	USP16	Missense_Mutation	p.E160G	0.07	tolerated(0.07)	benign(0.242)
TCGA-KO-8407-01	21	35472981	35472981	T	C	SLC5A3	3'UTR		0.04		
TCGA-KO-8407-01	22	30419455	30419455	C	T	MTMR3	Intron		0.05		
TCGA-KO-8407-01	22	41368482	41368482	A	G	RBX1	Missense_Mutation	p.Y106C	0.23	tolerated(0.07)	probably_damaging(0.926)
TCGA-KO-8407-01	2	105956200	105956200	C	A	C2orf49	Missense_Mutation	p.T87N	0.09	tolerated(0.5)	benign(0.031)
TCGA-KO-8407-01	3	142681549	142681549	G	A	PAQR9	Silent	p.R210R	0.05		
TCGA-KO-8407-01	3	156866283	156866283	T	C	CCNL1	Missense_Mutation	p.H443R	0.38	tolerated(0.41)	possibly_damaging(0.84)
TCGA-KO-8407-01	3	38040486	38040486	G	T	VILL	Missense_Mutation	p.Q342H	0.39	deleterious(0.05)	possibly_damaging(0.533)
TCGA-KO-8407-01	3	40211564	40211564	C	T	MYRIP	Missense_Mutation	p.R285C	0.17	deleterious(0.04)	benign(0.005)
TCGA-KO-8407-01	4	52779712	52779712	G	A	DCUN1D4	Missense_Mutation	p.E281K	0.07	deleterious(0.01)	probably_damaging(0.996)
TCGA-KO-8407-01	5	13708238	13708238	C	T	DNAH5	Nonsense_Mutation	p.W4444*	0.06		
TCGA-KO-8407-01	5	140222358	140222358	G	A	PCDHA8	Silent	p.A484A	0.18		
TCGA-KO-8407-01	5	150311042	150311042	T	C	ZNF300P1	RNA		0.08		
TCGA-KO-8407-01	6	159173001	159173001	G	A	SYTL3	Missense_Mutation	p.G359E	0.16	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8407-01	6	159173011	159173011	G	A	SYTL3	Silent	p.K362K	0.15		
TCGA-KO-8407-01	6	75843574	75843574	C	A	COL12A1	Silent	p.L1888L	0.10		
TCGA-KO-8407-01	7	100390083	100390083	G	A	ZAN	Missense_Mutation	p.R2589H	0.09		unknown(0)
TCGA-KO-8407-01	7	123594255	123594255	C	T	SPAM1	Missense_Mutation	p.R211W	0.06	deleterious(0)	probably_damaging(1)
TCGA-KO-8407-01	7	158485614	158485614	G	A	NCAPG2	Missense_Mutation	p.S101F	0.12	tolerated(0.7)	benign(0.068)
TCGA-KO-8407-01	8	133673863	133673863	A	T	LRRC6	Missense_Mutation	p.D7E	0.07	tolerated(0.38)	benign(0.005)
TCGA-KO-8407-01	9	14720029	14720029	A	C	CER1	3'UTR		0.58		
TCGA-KO-8407-01	9	18941779	18941779	C	T	FAM154A	Missense_Mutation	p.V93I	0.04	tolerated(0.33)	benign(0.055)
TCGA-KO-8407-01	X	102967204	102967204	G	C	TMEM31	Missense_Mutation	p.K6N	0.49	deleterious_low_confidence(0.01)	possibly_damaging(0.895)
TCGA-KO-8408-01	10	63700094	63700094	G	A	ARID5B	Silent	p.L143L	0.07		
TCGA-KO-8408-01	10	89693003	89693003	A	T	PTEN	Nonsense_Mutation	p.K163*	0.73		
TCGA-KO-8408-01	10	98743653	98743653	A	G	C10orf12	Missense_Mutation	p.K836E	0.61	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8408-01	11	100227101	100227101	G	A	CNTN5	3'UTR		0.40		
TCGA-KO-8408-01	11	102098274	102098274	C	A	YAP1	Missense_Mutation	p.P413Q	0.35	deleterious(0)	probably_damaging(0.961)
TCGA-KO-8408-01	11	103908145	103908145	C	T	DDI1	Missense_Mutation	p.R199C	0.24	deleterious(0)	possibly_damaging(0.696)
TCGA-KO-8408-01	11	134019168	134019168	A	G	JAM3	3'UTR		0.27		
TCGA-KO-8408-01	11	60886402	60886402	C	G	CD5	Missense_Mutation	p.T139R	0.31	tolerated(0.09)	benign(0.024)
TCGA-KO-8408-01	11	61544745	61544745	C	T	MYRF	Missense_Mutation	p.P534S	0.05	deleterious(0)	probably_damaging(1)
TCGA-KO-8408-01	11	6415260	6415260	G	C	SMPD1	Missense_Mutation	p.G492A	0.31	tolerated(0.25)	benign(0.025)
TCGA-KO-8408-01	12	102043096	102043096	G	T	MYBPC1	Nonsense_Mutation	p.E394*	0.05		
TCGA-KO-8408-01	12	21242950	21242950	A	G	SLCO1B7	Silent	p.V611V	0.04		
TCGA-KO-8408-01	12	77419483	77419483	G	A	E2F7	Missense_Mutation	p.S807F	0.56	deleterious(0)	possibly_damaging(0.711)
TCGA-KO-8408-01	12	88420834	88420834	C	T	C12orf50	5'UTR		0.32		
TCGA-KO-8408-01	13	37269302	37269302	G	A	SERTM1	Silent	p.T29T	0.61		
TCGA-KO-8408-01	13	39266098	39266098	C	T	FREM2	Silent	p.H1539H	0.05		
TCGA-KO-8408-01	14	21992203	21992203	C	T	SALL2	Silent	p.L553L	0.05		
TCGA-KO-8408-01	14	45513838	45513838	G	T	FAM179B	Missense_Mutation	p.V1307L	0.46	deleterious(0)	probably_damaging(0.92)
TCGA-KO-8408-01	14	52458098	52458098	T	C	C14orf166	Missense_Mutation	p.I42T	0.35	deleterious(0)	possibly_damaging(0.447)
TCGA-KO-8408-01	14	91044471	91044471	G	A	TTC7B	Silent	p.H763H	0.45		
TCGA-KO-8408-01	15	41501706	41501706	C	T	EXD1	Nonsense_Mutation	p.W118*	0.42		
TCGA-KO-8408-01	15	72954855	72954855	G	A	GOLGA6B	Silent	p.Q370Q	0.06		
TCGA-KO-8408-01	15	99671287	99671287	A	T	SYNM	Nonsense_Mutation	p.K907*	0.30		
TCGA-KO-8408-01	16	53493465	53493465	C	T	RBL2	Missense_Mutation	p.R428C	0.10	deleterious(0)	probably_damaging(0.982)
TCGA-KO-8408-01	17	39623194	39623194	G	A	KRT32	Silent	p.I128I	0.33		
TCGA-KO-8408-01	17	40049426	40049426	T	C	ACLY	Silent	p.G487G	0.73		
TCGA-KO-8408-01	17	4806192	4806192	G	T	C17orf107	3'UTR		0.15		
TCGA-KO-8408-01	17	7579716	7579716	G	-	TP53	Frame_Shift_Del	p.P27Lfs*17	0.46		
TCGA-KO-8408-01	19	17088187	17088187	G	A	CPAMD8	Silent	p.F630F	0.13		
TCGA-KO-8408-01	19	38946146	38946146	C	G	RYR1	Missense_Mutation	p.D544E	0.27		probably_damaging(0.999)
TCGA-KO-8408-01	19	39398202	39398202	G	A	NFKBIB	Missense_Mutation	p.R291H	0.17	tolerated(0.17)	benign(0.007)
TCGA-KO-8408-01	19	44418134	44418134	G	C	ZNF45	Nonsense_Mutation	p.S485*	0.30		
TCGA-KO-8408-01	19	45991752	45991752	G	T	RTN2	Missense_Mutation	p.P492T	0.23	deleterious(0)	probably_damaging(0.99)
TCGA-KO-8408-01	19	49552139	49552139	C	T	CGB8	5'UTR		0.22		
TCGA-KO-8408-01	19	54744177	54744177	T	A	LILRA6	Missense_Mutation	p.S411C	0.12	deleterious(0)	probably_damaging(0.996)
TCGA-KO-8408-01	1	12921708	12921708	A	G	PRAMEF2	3'UTR		0.19		
TCGA-KO-8408-01	1	214171243	214171243	T	A	PROX1	Silent	p.P455P	0.65		
TCGA-KO-8408-01	1	24645989	24645989	A	G	GRHL3	5'UTR		0.11		
TCGA-KO-8408-01	1	3328864	3328864	G	C	PRDM16	Missense_Mutation	p.E701D	0.32	tolerated(0.07)	probably_damaging(0.936)
TCGA-KO-8408-01	20	11903397	11903397	A	G	BTBD3	Missense_Mutation	p.T218A	0.05	tolerated(0.06)	benign(0.035)
TCGA-KO-8408-01	20	2777897	2777897	G	A	CPXM1	Missense_Mutation	p.T258I	0.26	deleterious(0.01)	possibly_damaging(0.517)
TCGA-KO-8408-01	20	30408125	30408125	C	T	MYLK2	Silent	p.G83G	0.44		
TCGA-KO-8408-01	20	31657702	31657702	T	A	BPIFB3	Silent	p.T386T	0.27		
TCGA-KO-8408-01	20	61513562	61513562	G	C	DIDO1	Missense_Mutation	p.A1249G	0.24		benign(0.003)
TCGA-KO-8408-01	20	62384061	62384061	T	C	ZBTB46	Missense_Mutation	p.E459G	0.14	deleterious(0)	benign(0.103)
TCGA-KO-8408-01	22	19363305	19363305	T	C	HIRA	Missense_Mutation	p.T542A	0.38	tolerated(0.42)	benign(0.001)
TCGA-KO-8408-01	22	37326788	37326788	G	A	CSF2RB	Missense_Mutation	p.V310M	0.07	deleterious(0)	probably_damaging(0.987)
TCGA-KO-8408-01	22	50832465	50832465	A	T	PPP6R2	Missense_Mutation	p.K43M	0.36	deleterious(0)	probably_damaging(0.978)
TCGA-KO-8408-01	2	132258761	132258761	C	T	AC093838.4	RNA		0.04		
TCGA-KO-8408-01	2	170938369	170938369	T	A	UBR3	3'UTR		0.69		
TCGA-KO-8408-01	3	105464866	105464866	A	C	CBLB	Missense_Mutation	p.L247W	0.40	deleterious(0)	probably_damaging(1)
TCGA-KO-8408-01	3	143704589	143704589	G	T	C3orf58	Missense_Mutation	p.V288F	0.30	deleterious(0)	possibly_damaging(0.866)
TCGA-KO-8408-01	3	48694702	48694702	G	A	CELSR3	Silent	p.T1276T	0.40		
TCGA-KO-8408-01	4	79301068	79301068	C	T	FRAS1	Nonsense_Mutation	p.Q1161*	0.21		
TCGA-KO-8408-01	5	134782502	134782502	C	T	C5orf20	Silent	p.S99S	0.21		
TCGA-KO-8408-01	5	140306470	140306470	G	C	PCDHAC1	5'Flank		0.32		
TCGA-KO-8408-01	5	149677902	149677902	C	A	ARSI	Missense_Mutation	p.E195D	0.43	tolerated(1)	benign(0.014)
TCGA-KO-8408-01	5	21461923	21461923	A	T	GUSBP1	RNA		0.27		
TCGA-KO-8408-01	5	79616249	79616249	T	G	SPZ1	Missense_Mutation	p.L72R	0.40	deleterious(0)	probably_damaging(0.962)
TCGA-KO-8408-01	6	39874437	39874437	G	C	MOCS1	3'UTR		0.73		
TCGA-KO-8408-01	7	100204167	100204168	GC	A	PCOLCE	Frame_Shift_Del	p.G285Dfs*55	0.42		
TCGA-KO-8408-01	7	100334192	100334192	C	T	ZAN	Nonsense_Mutation	p.R65*	0.29		
TCGA-KO-8408-01	7	131913154	131913154	C	T	PLXNA4	Missense_Mutation	p.R560Q	0.08	tolerated(0.75)	benign(0.311)
TCGA-KO-8408-01	7	133986798	133986798	T	A	SLC35B4	Missense_Mutation	p.M137L	0.41	tolerated(0.17)	benign(0.229)
TCGA-KO-8408-01	7	5353337	5353337	C	A	TNRC18	Missense_Mutation	p.Q2395H	0.63		benign(0.216)
TCGA-KO-8408-01	8	121238908	121238908	C	T	COL14A1	Missense_Mutation	p.T636M	0.33	deleterious(0)	benign(0.027)
TCGA-KO-8408-01	8	12883931	12883931	G	C	KIAA1456	3'UTR		0.11		
TCGA-KO-8408-01	8	22052331	22052331	A	G	BMP1	Missense_Mutation	p.E513G	0.24	tolerated(0.06)	benign(0.355)
TCGA-KO-8408-01	8	90802425	90802425	G	A	RIPK2	Silent	p.L468L	0.36		
TCGA-KO-8408-01	9	37861212	37861212	C	G	DCAF10	Missense_Mutation	p.H463D	0.14	deleterious(0.01)	probably_damaging(0.98)
TCGA-KO-8408-01	X	118219460	118219460	C	G	KIAA1210	Missense_Mutation	p.W1578C	0.06	deleterious(0)	probably_damaging(0.997)
TCGA-KO-8408-01	X	153230057	153230057	T	C	HCFC1	Missense_Mutation	p.K105R	0.05	tolerated(0.11)	benign(0.052)
TCGA-KO-8408-01	X	49773090	49773090	A	G	CLCN5	Intron		0.73		
TCGA-KO-8408-01	X	76937378	76937378	A	-	ATRX	Frame_Shift_Del	p.S1124Lfs*6	0.28		
TCGA-KO-8408-01	X	77275864	77275864	T	C	ATP7A	Missense_Mutation	p.V917A	0.86	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8409-01	10	25887315	25887315	C	G	GPR158	Silent	p.T920T	0.19		
TCGA-KO-8409-01	11	124805912	124805912	C	T	HEPACAM	5'UTR		0.06		
TCGA-KO-8409-01	11	22291963	22291963	G	A	ANO5	Silent	p.G668G	0.05		
TCGA-KO-8409-01	11	26465370	26465370	C	T	ANO3	Silent	p.S100S	0.04		
TCGA-KO-8409-01	12	11139408	11139408	C	A	TAS2R50	Missense_Mutation	p.V18F	0.05	tolerated(0.05)	benign(0.33)
TCGA-KO-8409-01	12	81102660	81102660	G	A	MYF6	Missense_Mutation	p.R217Q	0.38	tolerated(0.32)	benign(0.005)
TCGA-KO-8409-01	14	104205041	104205041	C	T	PPP1R13B	Missense_Mutation	p.V947M	0.50	deleterious(0)	probably_damaging(1)
TCGA-KO-8409-01	15	82564044	82564044	C	T	FAM154B	Missense_Mutation	p.R52W	0.04	deleterious(0)	possibly_damaging(0.893)
TCGA-KO-8409-01	16	23546345	23546345	C	A	EARS2	Silent	p.L274L	0.48		
TCGA-KO-8409-01	16	27215356	27215358	GCC	-	KDM8	5'UTR		0.26		
TCGA-KO-8409-01	19	39217630	39217630	A	G	ACTN4	Missense_Mutation	p.T742A	0.35	tolerated(0.22)	possibly_damaging(0.732)
TCGA-KO-8409-01	19	58472845	58472845	T	G	C19orf18	Missense_Mutation	p.D149A	0.09	deleterious(0.02)	benign(0.031)
TCGA-KO-8409-01	1	152056797	152056797	T	A	TCHHL1	3'UTR		0.75		
TCGA-KO-8409-01	1	21014271	21014271	C	T	KIF17	Silent	p.Q516Q	0.07		
TCGA-KO-8409-01	1	233193227	233193227	A	G	PCNXL2	Intron		0.36		
TCGA-KO-8409-01	2	27550102	27550102	T	C	GTF3C2	Missense_Mutation	p.E820G	0.11	tolerated(0.22)	benign(0.047)
TCGA-KO-8409-01	2	29416536	29416536	C	T	ALK	Missense_Mutation	p.G1473R	0.06	tolerated(0.09)	benign(0.025)
TCGA-KO-8409-01	3	150127405	150127405	C	T	TSC22D2	Silent	p.L90L	0.75		
TCGA-KO-8409-01	4	80954628	80954628	G	A	ANTXR2	Missense_Mutation	p.T265M	0.07	tolerated(0.21)	benign(0.003)
TCGA-KO-8409-01	4	96761794	96761794	G	A	PDHA2	Missense_Mutation	p.V165I	0.16	deleterious(0.02)	benign(0.26)
TCGA-KO-8409-01	6	17507412	17507412	G	A	CAP2	Missense_Mutation	p.A105T	0.80	tolerated(0.67)	benign(0.009)
TCGA-KO-8409-01	6	29012270	29012270	G	A	OR2W1	Missense_Mutation	p.T228M	0.78	tolerated(0.28)	benign(0)
TCGA-KO-8409-01	7	75617798	75617798	G	C	POR	3'Flank		0.42		
TCGA-KO-8409-01	8	146201992	146201992	C	T	ZNF252P	RNA		0.12		
TCGA-KO-8409-01	8	42294728	42294728	C	T	SLC20A2	Silent	p.S434S	0.10		
TCGA-KO-8409-01	X	55651617	55651617	C	G	FOXR2	3'UTR		0.90		
TCGA-KO-8410-01	10	102762597	102762597	C	T	LZTS2	Missense_Mutation	p.P101L	0.18	tolerated(0.34)	benign(0.013)
TCGA-KO-8410-01	10	124352100	124352100	T	C	DMBT1	Missense_Mutation	p.V830A	0.11	tolerated(0.08)	unknown(0)
TCGA-KO-8410-01	12	21242855	21242855	G	A	SLCO1B7	Missense_Mutation	p.G580S	0.10	tolerated(0.09)	possibly_damaging(0.899)
TCGA-KO-8410-01	13	113750740	113750740	T	C	MCF2L	Missense_Mutation	p.L1044P	0.27	deleterious(0)	possibly_damaging(0.908)
TCGA-KO-8410-01	14	61748352	61748352	T	G	TMEM30B	5'UTR		0.31		
TCGA-KO-8410-01	15	72642852	72642852	T	A	HEXA	Intron		0.62		
TCGA-KO-8410-01	16	46782212	46782212	A	G	MYLK3	5'UTR		0.18		
TCGA-KO-8410-01	16	721884	721884	G	T	RHOT2	Missense_Mutation	p.V327L	0.19	tolerated(0.24)	benign(0.002)
TCGA-KO-8410-01	1	115220103	115220103	G	C	AMPD1	Nonsense_Mutation	p.Y452*	0.10		
TCGA-KO-8410-01	1	1721989	1721989	C	T	GNB1	Missense_Mutation	p.G182R	0.07	deleterious(0)	probably_damaging(0.994)
TCGA-KO-8410-01	1	186337082	186337082	T	C	TPR	Silent	p.E121E	0.06		
TCGA-KO-8410-01	20	34611599	34611599	T	A	CNBD2	Missense_Mutation	p.L445M	0.09	tolerated(0.1)	benign(0.099)
TCGA-KO-8410-01	20	4708900	4708900	C	T	PRND	3'UTR		0.13		
TCGA-KO-8410-01	21	41384994	41384994	G	A	DSCAM	Silent	p.N2002N	0.04		
TCGA-KO-8410-01	21	47685949	47685949	A	G	MCM3AP	Missense_Mutation	p.V974A	0.09	tolerated(0.31)	benign(0.254)
TCGA-KO-8410-01	2	162757484	162757484	G	A	SLC4A10	Missense_Mutation	p.G469R	0.17	tolerated(0.48)	possibly_damaging(0.731)
TCGA-KO-8410-01	2	242076636	242076636	G	A	PASK	Missense_Mutation	p.T307I	0.28	deleterious(0)	probably_damaging(0.923)
TCGA-KO-8410-01	2	70910791	70910791	C	A	ADD2	Missense_Mutation	p.G353W	0.07	deleterious(0.01)	probably_damaging(1)
TCGA-KO-8410-01	3	113775289	113775289	A	C	KIAA1407	Missense_Mutation	p.S9A	0.55	tolerated(0.4)	benign(0.015)
TCGA-KO-8410-01	4	62598528	62598528	T	C	LPHN3	Missense_Mutation	p.S151P	0.06	deleterious(0.01)	probably_damaging(0.994)
TCGA-KO-8410-01	4	79403634	79403634	C	T	FRAS1	Silent	p.A2899A	0.36		
TCGA-KO-8410-01	5	14508681	14508681	T	A	TRIO	3'UTR		0.47		
TCGA-KO-8410-01	5	36136550	36136550	C	T	LMBRD2	Missense_Mutation	p.G203E	0.61	deleterious(0)	probably_damaging(1)
TCGA-KO-8410-01	5	52376390	52376393	TCCC	-	ITGA2	Frame_Shift_Del	p.P994Sfs*9	0.46		
TCGA-KO-8410-01	8	67357454	67357454	T	G	ADHFE1	Missense_Mutation	p.F119V	0.41	tolerated(0.17)	benign(0.206)
TCGA-KO-8410-01	9	107367862	107367862	C	T	OR13C2	Missense_Mutation	p.G16E	0.09	deleterious(0.01)	possibly_damaging(0.807)
TCGA-KO-8411-01	10	105331354	105331354	G	A	NEURL1	Missense_Mutation	p.A142T	0.05	deleterious(0)	probably_damaging(0.93)
TCGA-KO-8411-01	10	98819913	98819913	C	T	SLIT1	Missense_Mutation	p.R315H	0.35	deleterious(0)	probably_damaging(1)
TCGA-KO-8411-01	11	47356593	47356593	G	A	MYBPC3	Nonsense_Mutation	p.Q969*	0.16		
TCGA-KO-8411-01	12	10205356	10205356	C	T	CLEC9A	Silent	p.L24L	0.37		
TCGA-KO-8411-01	12	15784389	15784392	TTGT	-	EPS8	Frame_Shift_Del	p.K676Nfs*22	0.28		
TCGA-KO-8411-01	12	58152575	58152575	C	T	MARCH9	Silent	p.R312R	0.43		
TCGA-KO-8411-01	14	57675499	57675499	T	C	EXOC5	Missense_Mutation	p.H652R	0.49	tolerated(0.36)	benign(0.001)
TCGA-KO-8411-01	17	65960371	65960371	C	T	BPTF	Missense_Mutation	p.R2769C	0.18		probably_damaging(0.986)
TCGA-KO-8411-01	18	47088542	47088542	T	A	LIPG	5'UTR		0.33		
TCGA-KO-8411-01	18	55143925	55143925	G	A	ONECUT2	Silent	p.S495S	0.16		
TCGA-KO-8411-01	19	36243935	36243935	A	G	LIN37	Intron		0.08		
TCGA-KO-8411-01	19	52660555	52660555	A	G	ZNF836	Silent	p.H127H	0.41		
TCGA-KO-8411-01	1	1375675	1375675	C	T	VWA1	3'UTR		0.06		
TCGA-KO-8411-01	1	185891568	185891568	C	T	HMCN1	Nonsense_Mutation	p.R320*	0.04		
TCGA-KO-8411-01	1	68697908	68697908	T	C	WLS	Silent	p.Q25Q	0.07		
TCGA-KO-8411-01	21	28216883	28216883	C	T	ADAMTS1	Missense_Mutation	p.G131S	0.17	tolerated(0.53)	possibly_damaging(0.828)
TCGA-KO-8411-01	2	29274925	29274925	C	T	FAM179A	Missense_Mutation	p.T1009I	0.18	deleterious_low_confidence(0.04)	benign(0.272)
TCGA-KO-8411-01	3	38009346	38009346	G	A	CTDSPL	Silent	p.P133P	0.28		
TCGA-KO-8411-01	5	176047594	176047594	G	C	SNCB	3'UTR		0.60		
TCGA-KO-8411-01	5	6449023	6449023	A	G	UBE2QL1	Missense_Mutation	p.D6G	0.09	deleterious(0)	benign(0.322)
TCGA-KO-8411-01	6	19838202	19838202	A	G	ID4	Missense_Mutation	p.S73G	0.15	deleterious(0)	possibly_damaging(0.535)
TCGA-KO-8411-01	6	35930387	35930387	A	G	SLC26A8	Silent	p.A459A	0.09		
TCGA-KO-8411-01	8	12283491	12283491	A	G	FAM86B2	Silent	p.D300D	0.27		
TCGA-KO-8411-01	8	141461347	141461347	A	G	TRAPPC9	Silent	p.S140S	0.13		
TCGA-KO-8411-01	8	63942762	63942762	T	C	GGH	Missense_Mutation	p.E80G	0.07	tolerated(0.28)	benign(0.005)
TCGA-KO-8411-01	8	94934838	94934838	G	A	PDP1	Missense_Mutation	p.R209Q	0.09	tolerated(0.08)	benign(0.265)
TCGA-KO-8411-01	9	90500482	90500482	C	T	SPATA31E1	Silent	p.D360D	0.11		
TCGA-KO-8413-01	10	116608491	116608491	A	G	FAM160B1	Missense_Mutation	p.R600G	0.07	tolerated(0.54)	benign(0.024)
TCGA-KO-8413-01	11	4903765	4903765	C	T	OR51T1	Silent	p.D239D	0.15		
TCGA-KO-8413-01	11	76924024	76924024	A	T	MYO7A	Missense_Mutation	p.I2128F	0.18	tolerated(0.07)	benign(0.22)
TCGA-KO-8413-01	12	124819113	124819113	T	G	NCOR2	Silent	p.A2154A	0.20		
TCGA-KO-8413-01	16	18849726	18849726	G	T	SMG1	Missense_Mutation	p.L2383M	0.18	deleterious(0)	possibly_damaging(0.845)
TCGA-KO-8413-01	17	7578212	7578212	G	A	TP53	Nonsense_Mutation	p.R213*	0.36		
TCGA-KO-8413-01	18	22807259	22807259	C	T	ZNF521	Missense_Mutation	p.R208H	0.27	tolerated(0.16)	probably_damaging(0.983)
TCGA-KO-8413-01	19	11488817	11488817	A	G	EPOR	Missense_Mutation	p.L457P	0.07	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8413-01	19	53057816	53057816	G	T	ZNF808	Missense_Mutation	p.M549I	0.33	tolerated(0.18)	benign(0.005)
TCGA-KO-8413-01	1	179782953	179782953	G	A	FAM163A	Missense_Mutation	p.E45K	0.04	tolerated(0.4)	benign(0.231)
TCGA-KO-8413-01	1	219347248	219347248	G	T	LYPLAL1	Missense_Mutation	p.G6W	0.36	deleterious_low_confidence(0.01)	possibly_damaging(0.497)
TCGA-KO-8413-01	20	271060	271060	G	A	C20orf96	Intron		0.14		
TCGA-KO-8413-01	3	123987675	123987675	A	G	KALRN	Missense_Mutation	p.N179S	0.07	deleterious(0.01)	possibly_damaging(0.467)
TCGA-KO-8413-01	3	99514923	99514923	G	A	COL8A1	Silent	p.L726L	0.29		
TCGA-KO-8413-01	4	156294336	156294336	T	C	MAP9	Missense_Mutation	p.K145E	0.17	tolerated(0.24)	benign(0.045)
TCGA-KO-8413-01	5	45267264	45267264	G	A	HCN1	Silent	p.N570N	0.58		
TCGA-KO-8413-01	8	103324629	103324629	C	G	UBR5	Missense_Mutation	p.D698H	0.07	deleterious(0.01)	probably_damaging(0.996)
TCGA-KO-8413-01	8	57224802	57224802	C	T	SDR16C5	Missense_Mutation	p.G127R	0.06	deleterious(0.02)	probably_damaging(1)
TCGA-KO-8413-01	8	69730682	69730682	G	T	C8orf34	3'UTR		0.19		
TCGA-KO-8413-01	X	79932729	79932729	T	C	BRWD3	Silent	p.K1596K	0.06		
TCGA-KO-8414-01	10	55571328	55571328	A	C	PCDH15	Missense_Mutation	p.I1475M	0.29	deleterious_low_confidence(0.03)	benign(0.02)
TCGA-KO-8414-01	11	125359542	125359542	G	A	FEZ1	Silent	p.S44S	0.22		
TCGA-KO-8414-01	11	45945039	45945039	A	G	GYLTL1B	Missense_Mutation	p.I101V	0.12	tolerated(0.25)	benign(0.03)
TCGA-KO-8414-01	11	63681937	63681937	A	G	RCOR2	Missense_Mutation	p.M186T	0.21	deleterious(0)	probably_damaging(0.987)
TCGA-KO-8414-01	11	74800084	74800084	G	A	OR2AT4	Silent	p.H225H	0.09		
TCGA-KO-8414-01	12	52370351	52370351	C	A	ACVR1B	Missense_Mutation	p.S191Y	0.07	deleterious(0.01)	probably_damaging(0.999)
TCGA-KO-8414-01	14	106370563	106370563	G	A	IGHD3-9	Nonsense_Mutation	p.R3*	0.17		
TCGA-KO-8414-01	16	30990508	30990508	C	G	SETD1A	Missense_Mutation	p.P1134R	0.16		unknown(0)
TCGA-KO-8414-01	17	7577543	7577543	C	A	TP53	Missense_Mutation	p.M246I	0.06	deleterious(0)	possibly_damaging(0.811)
TCGA-KO-8414-01	18	76870390	76870390	A	G	ATP9B	Missense_Mutation	p.K110R	0.12	tolerated(0.34)	benign(0.003)
TCGA-KO-8414-01	19	15839690	15839690	C	T	OR10H2	Silent	p.Y279Y	0.33		
TCGA-KO-8414-01	19	48953945	48953945	T	C	GRWD1	Silent	p.C235C	0.11		
TCGA-KO-8414-01	19	57327003	57327003	C	T	PEG3	Missense_Mutation	p.R936H	0.13	tolerated(0.22)	benign(0.189)
TCGA-KO-8414-01	1	34037290	34037290	T	C	CSMD2	Missense_Mutation	p.E2602G	0.82	tolerated(0.21)	benign(0.17)
TCGA-KO-8414-01	1	44079334	44079334	A	G	PTPRF	Missense_Mutation	p.N1340S	0.07	deleterious(0.02)	benign(0.001)
TCGA-KO-8414-01	20	24646034	24646034	G	A	SYNDIG1	Missense_Mutation	p.R224Q	0.22	deleterious(0)	possibly_damaging(0.555)
TCGA-KO-8414-01	2	11907890	11907890	T	A	LPIN1	Missense_Mutation	p.V114D	0.08	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8414-01	2	223918184	223918184	A	G	KCNE4	3'UTR		0.08		
TCGA-KO-8414-01	2	241570087	241570087	C	T	GPR35	Missense_Mutation	p.R271C	0.82	tolerated(0.1)	probably_damaging(0.947)
TCGA-KO-8414-01	3	150930950	150930950	T	A	P2RY14	3'UTR		0.54		
TCGA-KO-8414-01	4	15640143	15640143	T	C	FBXL5	Missense_Mutation	p.K191E	0.27	tolerated(0.16)	probably_damaging(0.967)
TCGA-KO-8414-01	6	56417323	56417323	C	A	DST	Nonsense_Mutation	p.E2800*	0.05		
TCGA-KO-8414-01	7	157449123	157449123	G	A	PTPRN2	Missense_Mutation	p.R708C	0.05	deleterious(0)	probably_damaging(1)
TCGA-KO-8414-01	7	30544237	30544238	CT	-	GGCT	Frame_Shift_Del	p.R30Dfs*20	0.38		
TCGA-KO-8414-01	7	86479693	86479693	C	T	GRM3	Missense_Mutation	p.T800M	0.24	deleterious(0.04)	probably_damaging(0.944)
TCGA-KO-8414-01	8	141321473	141321473	T	C	TRAPPC9	Missense_Mutation	p.E597G	0.12	deleterious(0.02)	probably_damaging(0.986)
TCGA-KO-8414-01	X	69652964	69652964	C	A	GDPD2	3'UTR		0.06		
TCGA-KO-8415-01	10	89720712	89720712	A	-	PTEN	Frame_Shift_Del	p.V290*	0.46		
TCGA-KO-8415-01	12	122260719	122260719	G	T	SETD1B	Missense_Mutation	p.A1369S	0.29		unknown(0)
TCGA-KO-8415-01	12	13828724	13828724	C	T	GRIN2B	Silent	p.P360P	0.45		
TCGA-KO-8415-01	12	52913573	52913573	C	T	KRT5	Missense_Mutation	p.E170K	0.47	deleterious(0)	probably_damaging(0.995)
TCGA-KO-8415-01	12	56335069	56335069	G	A	DGKA	Missense_Mutation	p.V379I	0.17	deleterious(0.02)	possibly_damaging(0.629)
TCGA-KO-8415-01	13	111367954	111367954	A	T	ING1	Missense_Mutation	p.N55I	0.37	tolerated_low_confidence(0.11)	benign(0)
TCGA-KO-8415-01	14	100595075	100595075	G	T	EVL	Missense_Mutation	p.R236I	0.19	deleterious(0)	probably_damaging(0.976)
TCGA-KO-8415-01	14	20248760	20248760	C	A	OR4M1	Silent	p.S93S	0.06		
TCGA-KO-8415-01	16	12798816	12798816	T	A	CPPED1	Missense_Mutation	p.N127I	0.37	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8415-01	16	19310063	19310063	C	T	CLEC19A	Nonsense_Mutation	p.R53*	0.33		
TCGA-KO-8415-01	16	67974324	67974324	A	T	LCAT	Missense_Mutation	p.I269K	0.36	tolerated(0.08)	benign(0.027)
TCGA-KO-8415-01	17	39535652	39535652	G	A	KRT34	Missense_Mutation	p.R319C	0.73	tolerated(0.13)	probably_damaging(0.993)
TCGA-KO-8415-01	17	7576525	7576525	A	C	TP53	Intron		0.61		
TCGA-KO-8415-01	17	79899490	79899490	C	T	MYADML2	Missense_Mutation	p.R43Q	0.74	tolerated(0.59)	benign(0.006)
TCGA-KO-8415-01	18	28604440	28604440	G	T	DSC3	Missense_Mutation	p.T217N	0.45	deleterious(0)	probably_damaging(0.94)
TCGA-KO-8415-01	19	16982119	16982119	G	A	SIN3B	Silent	p.T866T	0.18		
TCGA-KO-8415-01	19	52505118	52505118	T	G	ZNF615	Silent	p.R62R	0.48		
TCGA-KO-8415-01	1	155224214	155224214	A	T	FAM189B	Missense_Mutation	p.W87R	0.78	deleterious(0)	probably_damaging(0.992)
TCGA-KO-8415-01	1	190067565	190067565	G	A	BRINP3	Silent	p.Y628Y	0.25		
TCGA-KO-8415-01	21	11026794	11026794	C	G	BAGE2	RNA		0.11		
TCGA-KO-8415-01	2	130939248	130939248	A	G	SMPD4	5'UTR		0.12		
TCGA-KO-8415-01	2	31621476	31621476	G	A	XDH	Silent	p.P132P	0.78		
TCGA-KO-8415-01	3	123650285	123650285	T	C	CCDC14	Silent	p.E512E	0.06		
TCGA-KO-8415-01	5	140736273	140736273	C	T	PCDHGA4	Silent	p.S502S	0.43		
TCGA-KO-8415-01	5	170725856	170725856	G	A	RANBP17	Missense_Mutation	p.M1087I	0.16	deleterious_low_confidence(0.02)	benign(0.138)
TCGA-KO-8415-01	5	89981756	89981756	G	A	GPR98	Missense_Mutation	p.G2145E	0.14		probably_damaging(0.999)
TCGA-KO-8415-01	6	30681950	30681950	T	C	MDC1	Silent	p.L49L	0.20		
TCGA-KO-8415-01	7	95668630	95668630	C	A	DYNC1I1	Missense_Mutation	p.P486Q	0.45	deleterious(0)	probably_damaging(1)
TCGA-KO-8415-01	8	134145788	134145788	G	A	TG	Missense_Mutation	p.R2691H	0.42	tolerated(0.59)	benign(0.001)
TCGA-KO-8415-01	8	3263582	3263582	C	T	CSMD1	Missense_Mutation	p.V745M	0.20		probably_damaging(1)
TCGA-KO-8415-01	8	37688272	37688272	C	T	GPR124	Missense_Mutation	p.R255C	0.39	deleterious(0)	probably_damaging(0.985)
TCGA-KO-8415-01	X	2827911	2827911	C	G	ARSD	Missense_Mutation	p.M415I	0.61	deleterious(0.02)	possibly_damaging(0.831)
TCGA-KO-8416-01	10	105727558	105727558	A	C	SLK	Missense_Mutation	p.K19Q	0.16	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8416-01	10	5415962	5415962	C	T	UCN3	Silent	p.T93T	0.09		
TCGA-KO-8416-01	11	128840231	128840231	T	C	ARHGAP32	Missense_Mutation	p.Y1612C	0.07	deleterious(0)	probably_damaging(0.998)
TCGA-KO-8416-01	11	57970779	57970779	G	A	OR1S2	Missense_Mutation	p.T292I	0.05	deleterious(0.01)	possibly_damaging(0.511)
TCGA-KO-8416-01	11	77590132	77590132	A	G	INTS4	Missense_Mutation	p.S919P	0.06	tolerated(0.27)	benign(0.001)
TCGA-KO-8416-01	12	50045190	50045190	A	T	FMNL3	Silent	p.S549S	0.07		
TCGA-KO-8416-01	12	9885606	9885606	G	A	CLECL1	Silent	p.Y85Y	0.17		
TCGA-KO-8416-01	15	23890897	23890897	G	T	MAGEL2	Missense_Mutation	p.P62T	0.08	tolerated_low_confidence(1)	benign(0)
TCGA-KO-8416-01	15	28456246	28456246	T	A	HERC2	Missense_Mutation	p.Y2324F	0.02		benign(0.005)
TCGA-KO-8416-01	15	74032954	74032954	C	T	C15orf59	Silent	p.S62S	0.05		
TCGA-KO-8416-01	16	58030679	58030679	G	A	ZNF319	Silent	p.Y497Y	0.07		
TCGA-KO-8416-01	17	74017852	74017852	T	C	EVPL	Missense_Mutation	p.Q273R	0.18	tolerated(0.17)	benign(0.081)
TCGA-KO-8416-01	17	7578208	7578208	T	A	TP53	Missense_Mutation	p.H214L	0.07	deleterious(0)	probably_damaging(0.944)
TCGA-KO-8416-01	17	7578212	7578212	G	A	TP53	Nonsense_Mutation	p.R213*	0.12		
TCGA-KO-8416-01	19	15839010	15839010	C	T	OR10H2	Missense_Mutation	p.R53C	0.33	deleterious(0.03)	benign(0.014)
TCGA-KO-8416-01	19	52919685	52919685	G	T	ZNF528	Missense_Mutation	p.G527V	0.08	deleterious(0)	probably_damaging(0.976)
TCGA-KO-8416-01	20	2306576	2306576	T	C	TGM3	Silent	p.A355A	0.12		
TCGA-KO-8416-01	20	35177711	35177711	G	A	MYL9	3'UTR		0.41		
TCGA-KO-8416-01	21	43786634	43786634	G	A	TFF1	5'UTR		0.08		
TCGA-KO-8416-01	3	119263627	119263627	C	T	CD80	Missense_Mutation	p.R63H	0.04	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8416-01	4	69195975	69195975	T	A	YTHDC1	Missense_Mutation	p.R392S	0.20	deleterious(0.01)	possibly_damaging(0.82)
TCGA-KO-8416-01	4	80328442	80328442	C	A	GK2	Missense_Mutation	p.A305S	0.05	deleterious(0.01)	probably_damaging(0.96)
TCGA-KO-8416-01	5	150562988	150562988	G	A	CCDC69	3'UTR		0.09		
TCGA-KO-8416-01	5	64942924	64942924	T	A	TRAPPC13	Missense_Mutation	p.S115T	0.09	tolerated(0.5)	benign(0.026)
TCGA-KO-8416-01	5	94253666	94253666	G	C	MCTP1	Missense_Mutation	p.P429A	0.09	tolerated_low_confidence(0.18)	benign(0.001)
TCGA-KO-8416-01	9	139743845	139743845	C	G	PHPT1	5'UTR		0.46		
TCGA-KO-8416-01	X	115572265	115572265	G	-	SLC6A14	Frame_Shift_Del		0.13		
TCGA-KO-8417-01	12	6806860	6806860	G	T	PIANP	Missense_Mutation	p.P39Q	0.09	deleterious_low_confidence(0.04)	unknown(0)
TCGA-KO-8417-01	14	59793702	59793702	G	T	DAAM1	Missense_Mutation	p.M455I	0.12	deleterious(0.05)	unknown(0)
TCGA-KO-8417-01	14	75265325	75265325	C	T	YLPM1	Nonsense_Mutation	p.R1109*	0.11		
TCGA-KO-8417-01	15	58837951	58837951	C	T	LIPC	Silent	p.A195A	0.17		
TCGA-KO-8417-01	15	75042327	75042327	C	T	CYP1A2	Missense_Mutation	p.T83M	0.12	tolerated(0.24)	probably_damaging(0.965)
TCGA-KO-8417-01	17	79801890	79801891	AC	-	P4HB	Frame_Shift_Del	p.*509I	0.14		
TCGA-KO-8417-01	19	44982053	44982053	G	T	ZNF180	Missense_Mutation	p.N215K	0.08	tolerated(0.38)	benign(0.005)
TCGA-KO-8417-01	19	8994179	8994179	C	T	MUC16	Missense_Mutation	p.G13836S	0.22		probably_damaging(0.995)
TCGA-KO-8417-01	1	214171103	214171103	C	T	PROX1	Silent	p.L409L	0.11		
TCGA-KO-8417-01	1	4772576	4772576	G	C	AJAP1	Missense_Mutation	p.V216L	0.82	tolerated(0.1)	benign(0.139)
TCGA-KO-8417-01	2	231264974	231264974	C	T	SP140L	Intron		0.41		
TCGA-KO-8417-01	2	234581245	234581245	G	A	UGT1A9	Missense_Mutation	p.R222H	0.07	tolerated(0.22)	benign(0.001)
TCGA-KO-8417-01	5	157078493	157078493	G	A	SOX30	Silent	p.G198G	0.06		
TCGA-KO-8417-01	5	178580530	178580530	G	A	ADAMTS2	Missense_Mutation	p.R493C	0.53	deleterious(0)	probably_damaging(0.999)
TCGA-KO-8417-01	6	44137081	44137081	G	T	CAPN11	Missense_Mutation	p.G51V	0.08	deleterious(0.01)	probably_damaging(0.986)
TCGA-KO-8417-01	7	94827677	94827677	G	A	PPP1R9A	Missense_Mutation	p.E591K	0.18	deleterious(0)	probably_damaging(0.97)
TCGA-KO-8417-01	9	127915854	127915854	G	A	PPP6C	Silent	p.P246P	0.22		
TCGA-KO-8417-01	9	129595572	129595572	G	A	ZBTB43	Missense_Mutation	p.A262T	0.11	tolerated(0.71)	benign(0.005)
TCGA-KO-8417-01	9	40774999	40774999	T	A	ZNF658	Missense_Mutation	p.E92D	0.32	tolerated(0.31)	benign(0.002)
TCGA-KO-8417-01	X	35969403	35969403	G	A	CXorf22	Missense_Mutation	p.R271H	0.07	tolerated(0.38)	possibly_damaging(0.467)
TCGA-KO-8417-01	X	69506937	69506937	G	T	PDZD11	Missense_Mutation	p.H140N	0.05	deleterious_low_confidence(0)	probably_damaging(0.954)
TCGA-KO-8417-01	X	83361951	83361951	A	G	RPS6KA6	Silent	p.P403P	0.77